BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780282|ref|YP_003064695.1| putative transcription
regulator protein [Candidatus Liberibacter asiaticus str. psy62]
         (299 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780282|ref|YP_003064695.1| putative transcription regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039959|gb|ACT56755.1| putative transcription regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 299

 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 299/299 (100%), Positives = 299/299 (100%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT
Sbjct: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP
Sbjct: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP
Sbjct: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG
Sbjct: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF
Sbjct: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299


>gi|315122842|ref|YP_004063331.1| putative transcription regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496244|gb|ADR52843.1| putative transcription regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 298

 Score =  507 bits (1306), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/299 (82%), Positives = 267/299 (89%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSFDWDKLRVFYVVA+ GSFT AAEQL+LSQS+ISRQISGLE E+G KLFYRHARGL LT
Sbjct: 1   MSFDWDKLRVFYVVAKFGSFTSAAEQLNLSQSAISRQISGLEAEIGSKLFYRHARGLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQGSKLH V S+V  KLE+ QIELQESS KPSGKLRIATTIDLGQNLLQ + KEFLLLYP
Sbjct: 61  EQGSKLHNVASDVCQKLESIQIELQESSEKPSGKLRIATTIDLGQNLLQDSFKEFLLLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+IQ ILDNKDIDISM YADCAIRLRKP QSS LIQRKLVTI+MH YAAPHYLK   EP
Sbjct: 121 DIKIQFILDNKDIDISMCYADCAIRLRKPSQSS-LIQRKLVTINMHVYAAPHYLKRRGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LSIQ+LD H+L+TFGDLIPKCMEDFNWLATV R   EPRIS LQ+NSYLSIMQYC+LGSG
Sbjct: 180 LSIQDLDNHDLLTFGDLIPKCMEDFNWLATVGRAPHEPRISSLQINSYLSIMQYCILGSG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IALLPDYIVKDN N+VR+MEDV  PSF VYFCYPEALKNTGKLKAFR+FI LKA++WKF
Sbjct: 240 IALLPDYIVKDNSNIVRVMEDVSMPSFEVYFCYPEALKNTGKLKAFRDFIVLKAQNWKF 298


>gi|227822113|ref|YP_002826084.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
 gi|227341113|gb|ACP25331.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
          Length = 298

 Score =  371 bits (952), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/299 (57%), Positives = 221/299 (73%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VGIKLF+RHARGL LT
Sbjct: 1   MSLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGIKLFHRHARGLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   EV  KLE+ + +L E++ KPSGKLRI TT+ LGQ  L   ++EF+ LYP
Sbjct: 61  EQGEMLYRTAHEVLMKLESVKAQLSETTDKPSGKLRITTTVGLGQGWLTDKIQEFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+QLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 121 DVQVQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHIYAAPSYINKNGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SIQ+LD H +ITFG+  P  + D NWL    R    PR+S LQ+NS  SI + C+LG G
Sbjct: 180 QSIQDLDNHRIITFGEPAPNYLLDVNWLEIAGRDPDNPRVSHLQINSQTSIKRACLLGIG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV  +P L+++      PSF  YFCYP+ +KN  KLK FR++I  KAR+W F
Sbjct: 240 IAMLPDYIVGRDPGLIQLPISADIPSFDTYFCYPDEMKNAAKLKVFRDYIVAKARNWNF 298


>gi|15965319|ref|NP_385672.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307307945|ref|ZP_07587670.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307317176|ref|ZP_07596617.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15074499|emb|CAC46145.1| Transcription regulator LysR family [Sinorhizobium meliloti 1021]
 gi|306897264|gb|EFN28009.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306901561|gb|EFN32164.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 302

 Score =  366 bits (940), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/299 (57%), Positives = 220/299 (73%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VGIKLF+RHARGL LT
Sbjct: 5   MSLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSSLEQDVGIKLFHRHARGLILT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLE+ + +L E++ KPSGKLRI TT+ LGQ  L   ++EF+ LYP
Sbjct: 65  EQGEMLYRTAHDVLMKLESVKAQLSETTDKPSGKLRITTTVGLGQGWLTDKIQEFMSLYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+QLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 125 EIQVQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINKYGEP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +LD H +ITFG+  P  + D NWL    R    PRIS LQ+NS  SI + C+LG G
Sbjct: 184 QSLDDLDNHRIITFGEPAPNYLLDVNWLEIAGRDSDNPRISHLQINSQTSIKRACLLGIG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV  +P L+++      PSF  YFCYP+ LKN  KLK FR++I  KAR+W F
Sbjct: 244 IAMLPDYIVGRDPGLIQLPISADIPSFDTYFCYPDELKNAAKLKVFRDYIVAKARNWNF 302


>gi|150396465|ref|YP_001326932.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027980|gb|ABR60097.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 298

 Score =  365 bits (938), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 172/299 (57%), Positives = 220/299 (73%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VGIKLF+RHARGL LT
Sbjct: 1   MSLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSSLEQDVGIKLFHRHARGLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLE+ + +L E++ KPSGKLRI TT+ LGQ  L   ++EF+ LYP
Sbjct: 61  EQGEMLYRTAHDVLMKLESVKAQLSETTDKPSGKLRITTTVGLGQGWLTDKIQEFMSLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+QLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 121 EIQVQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINKFGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +LD H +ITFG+  P  + D NWL    R    PRIS LQ+NS  SI + C+LG G
Sbjct: 180 QSLDDLDNHRIITFGEPAPNYLLDVNWLEIAGRDSDNPRISHLQINSQTSIKRACLLGIG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV  +P L+++      PSF  YFCYP+ LKN  KLK FR++I  KAR+W F
Sbjct: 240 IAMLPDYIVGRDPGLIQLPISADIPSFDTYFCYPDELKNAAKLKVFRDYIVSKARNWNF 298


>gi|222086562|ref|YP_002545096.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724010|gb|ACM27166.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 303

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 168/299 (56%), Positives = 219/299 (73%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VGIKLF+RHARGL LT
Sbjct: 6   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGIKLFHRHARGLILT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++ KPSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 66  EQGELLYRTAHDVLLKLETVKMQLTETTDKPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 126 DMQIQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRYGEP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+++LD H +I+FG+  P  + D NWL    R     R+  LQ+NS  SI + C+LG G
Sbjct: 185 QSVEDLDDHRIISFGEPAPNYLLDVNWLEIAGRSSDNKRLPHLQINSQTSIKRACLLGIG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLK FR+F+  KAR W F
Sbjct: 245 IAVLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEMKNAAKLKVFRDFVVAKARKWNF 303


>gi|86358578|ref|YP_470470.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|190892727|ref|YP_001979269.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|86282680|gb|ABC91743.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
 gi|190698006|gb|ACE92091.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327193729|gb|EGE60608.1| LysR family transcriptional regulator [Rhizobium etli CNPAF512]
          Length = 298

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 169/299 (56%), Positives = 217/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT
Sbjct: 1   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGTKLFHRHARGLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++  PSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 61  EQGELLYRTAHDVLLKLETVKMQLTETTETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 121 DVQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++LD H +ITFG+  P  + D NWL    R     RI  LQ+NS  SI + C+LG G
Sbjct: 180 QKIEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRACLLGIG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +A LPDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 240 VACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 298


>gi|116253171|ref|YP_769009.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257819|emb|CAK08917.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 303

 Score =  359 bits (922), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 168/299 (56%), Positives = 217/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT
Sbjct: 6   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGTKLFHRHARGLILT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++ KPSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 66  EQGELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 126 DVQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++LD H +ITFG+  P  + D NWL    R     RI  LQ+NS  SI +  +LG G
Sbjct: 185 QKVEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRAALLGIG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +A LPDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 245 VACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 303


>gi|325293546|ref|YP_004279410.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325061399|gb|ADY65090.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 300

 Score =  358 bits (920), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 168/299 (56%), Positives = 218/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG+KLF+RHARGL LT
Sbjct: 3   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGVKLFHRHARGLILT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++ KPSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 63  EQGELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTTVGLGQGWLTDKVQEFLQLYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ IQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 123 EMSIQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI++LD H +I+FG+  P  + D NWL    R     RI  LQ+NS  SI + C+LG G
Sbjct: 182 QSIEDLDNHRIISFGEPAPNYLLDVNWLENAGRSSDNTRIPHLQINSQTSIKRACLLGIG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA LPDYIV  +P L+++      PSF  YFCYP+ +KN  KLKAFR+F+  KAR+W F
Sbjct: 242 IACLPDYIVGRDPGLIQLSLAADIPSFDTYFCYPDEMKNAAKLKAFRDFVVAKARNWNF 300


>gi|15889466|ref|NP_355147.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157334|gb|AAK87932.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 300

 Score =  358 bits (920), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 168/299 (56%), Positives = 218/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG+KLF+RHARGL LT
Sbjct: 3   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGVKLFHRHARGLILT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++ KPSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 63  EQGELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTTVGLGQGWLTDKVQEFLQLYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ IQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 123 EMSIQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+++LD H +I+FG+  P  + D NWL    R     RI  LQ+NS  SI + C+LG G
Sbjct: 182 QSVEDLDNHRIISFGEPAPNYLLDVNWLENAGRSSDNTRIPHLQINSQTSIKRACLLGIG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA LPDYIV  +P L+++      PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 242 IACLPDYIVGRDPGLIQLSLAADIPSFDTYFCYPDEMKNAAKLKAFRDFIVAKARNWNF 300


>gi|209550302|ref|YP_002282219.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536058|gb|ACI55993.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 303

 Score =  357 bits (916), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 168/299 (56%), Positives = 216/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT
Sbjct: 6   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGTKLFHRHARGLILT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++  PSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 66  EQGELLYRTAHDVLLKLETVKMQLTETNETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 126 DVQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++LD H +ITFG+  P  + D NWL    R     RI  LQ+NS  SI +  +LG G
Sbjct: 185 QKIEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRAALLGIG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +A LPDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 245 VACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 303


>gi|241205685|ref|YP_002976781.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859575|gb|ACS57242.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 303

 Score =  357 bits (915), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 167/299 (55%), Positives = 216/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT
Sbjct: 6   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEHDVGTKLFHRHARGLILT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++  PSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 66  EQGELLYRTAHDVLLKLETVKMQLTETTETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 126 DVQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++LD H +ITFG+  P  + D NWL    R     RI  LQ+NS  SI +  +LG G
Sbjct: 185 QKVEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRAALLGIG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +A LPDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 245 VACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 303


>gi|222149305|ref|YP_002550262.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221736289|gb|ACM37252.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 304

 Score =  355 bits (910), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 165/299 (55%), Positives = 218/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG+KLF+RHARGL LT
Sbjct: 7   IPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGVKLFHRHARGLILT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++ KPSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 67  EQGELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTTVGLGQGWLTDKVQEFLQLYP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ IQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 127 DMSIQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRYGEP 185

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++LD H +I+FG+  P  + D NWL    R     RI  LQ+NS  SI + C+LG G
Sbjct: 186 QTIEDLDNHRIISFGEPAPNYLLDVNWLEVAGRSSDNRRIPHLQINSQTSIKRACLLGIG 245

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +A +PDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLK FR+FI  KAR+W F
Sbjct: 246 VACMPDYIVGRDPGLIQLPINAEVPSFDTYFCYPDEMKNAAKLKVFRDFIVSKARNWNF 304


>gi|319408891|emb|CBI82548.1| transcriptional regulator, LysR family [Bartonella schoenbuchensis
           R1]
          Length = 301

 Score =  340 bits (873), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 160/298 (53%), Positives = 212/298 (71%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+  A +GSFTHAAE+LHLSQS+ISRQ++ LE +VG+ LF RHARGL LTEQ
Sbjct: 5   LDWDKLRVFHAAAEAGSFTHAAEKLHLSQSAISRQVAALEQDVGVPLFQRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE  + +L ESS KP+G+LR+ +T  +G   L     EFL LYPD+
Sbjct: 65  GEILYRTAYDVLMKLENARSQLNESSKKPTGRLRVTSTFGMGAGWLAKRAHEFLSLYPDM 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QIQL+LD+K+ID+++ YADCA+RLR+P Q   LIQRKL T+HMH YA+ +Y+    +P  
Sbjct: 125 QIQLLLDDKEIDLTIRYADCAVRLRQP-QQPGLIQRKLFTVHMHVYASVNYIATYGKPEK 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ELD H +I+FG+ +P  +   NWL    R  G  R+S LQ+N+ +SI    +   GIA
Sbjct: 184 LSELDSHRIISFGEPVPSYLSGLNWLEKAGRSDGSLRVSALQINNIISIKNALMRDFGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDYIV +N  LVR+  D++  PSF  +FCYP+ALKN+ KL AFR++IFLKAR W F
Sbjct: 244 VLPDYIVNNNEQLVRLFPDMVDIPSFDTFFCYPDALKNSAKLNAFRDYIFLKARKWSF 301


>gi|110634460|ref|YP_674668.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285444|gb|ABG63503.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 296

 Score =  337 bits (865), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 155/297 (52%), Positives = 208/297 (70%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+  A +GSFTHAAE LHLSQS+ISRQ+S LE E+G+ LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAAAAAGSFTHAAESLHLSQSAISRQVSALEQELGVSLFHRHARGLVLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLET ++ L E+  +PSG LR++TT+ LG   L   L EF  LYPDI
Sbjct: 61  GEMLYRTAHDVLMKLETVKVRLSEAKDRPSGVLRVSTTVGLGNGWLTERLPEFGALYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+Q+ILDN+++D++M  ADCA+R+R+P Q   LIQRKL T+H H YA+P YL    +P S
Sbjct: 121 QLQVILDNEELDLTMRQADCALRMRQP-QQPDLIQRKLFTVHFHLYASPAYLNRYGKPNS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I ELD+H ++ FG+ +P  + D NWL T  RP G  R + LQ+N+ LSI      G+GIA
Sbjct: 180 IDELDRHRIVIFGETVPPHLSDMNWLETAGRPEGSKRAAALQINNILSIKIAVQRGAGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY V  +  LV+++ +   PSF  YFCYP+ +KN  K++ FR+F+  K+R W +
Sbjct: 240 ILPDYAVGSDSGLVQLLPETEVPSFDTYFCYPDTMKNQAKMQVFRDFLISKSRGWIY 296


>gi|163843752|ref|YP_001628156.1| hypothetical protein BSUIS_A1554 [Brucella suis ATCC 23445]
 gi|163674475|gb|ABY38586.1| Hypothetical protein BSUIS_A1554 [Brucella suis ATCC 23445]
          Length = 301

 Score =  334 bits (857), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 156/298 (52%), Positives = 212/298 (71%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ
Sbjct: 5   LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD+
Sbjct: 65  GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  S
Sbjct: 125 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I E+D+H ++TFG+L P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GIA
Sbjct: 184 IDEIDQHRIVTFGELAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|297248772|ref|ZP_06932490.1| LysR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
 gi|297175941|gb|EFH35288.1| LysR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
          Length = 301

 Score =  332 bits (850), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 155/298 (52%), Positives = 211/298 (70%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ
Sbjct: 5   LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD+
Sbjct: 65  GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  S
Sbjct: 125 QLQLILDNEELDLAMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GIA
Sbjct: 184 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|17986796|ref|NP_539430.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. 16M]
 gi|23502367|ref|NP_698494.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|62290387|ref|YP_222180.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82700309|ref|YP_414883.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus
           2308]
 gi|148559572|ref|YP_001259377.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|161619445|ref|YP_001593332.1| hypothetical protein BCAN_A1535 [Brucella canis ATCC 23365]
 gi|189024613|ref|YP_001935381.1| LysR family transcriptional regulator [Brucella abortus S19]
 gi|225852977|ref|YP_002733210.1| hypothetical protein BMEA_A1549 [Brucella melitensis ATCC 23457]
 gi|237815892|ref|ZP_04594889.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|254689685|ref|ZP_05152939.1| hypothetical protein Babob68_05829 [Brucella abortus bv. 6 str.
           870]
 gi|254694175|ref|ZP_05156003.1| hypothetical protein Babob3T_05834 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697828|ref|ZP_05159656.1| hypothetical protein Babob28_08995 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254704751|ref|ZP_05166579.1| hypothetical protein Bsuib36_12694 [Brucella suis bv. 3 str. 686]
 gi|254708163|ref|ZP_05169991.1| hypothetical protein BpinM_14724 [Brucella pinnipedialis
           M163/99/10]
 gi|254710536|ref|ZP_05172347.1| hypothetical protein BpinB_09771 [Brucella pinnipedialis B2/94]
 gi|254719535|ref|ZP_05181346.1| hypothetical protein Bru83_08328 [Brucella sp. 83/13]
 gi|254730717|ref|ZP_05189295.1| hypothetical protein Babob42_05849 [Brucella abortus bv. 4 str.
           292]
 gi|256032029|ref|ZP_05445643.1| hypothetical protein BpinM2_15538 [Brucella pinnipedialis
           M292/94/1]
 gi|256045119|ref|ZP_05448020.1| hypothetical protein Bmelb1R_11564 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061551|ref|ZP_05451693.1| hypothetical protein Bneo5_14465 [Brucella neotomae 5K33]
 gi|256114056|ref|ZP_05454826.1| hypothetical protein Bmelb3E_14762 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256257936|ref|ZP_05463472.1| hypothetical protein Babob9C_11436 [Brucella abortus bv. 9 str.
           C68]
 gi|256263543|ref|ZP_05466075.1| bacterial regulatory protein LysR [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369914|ref|YP_003107425.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260546925|ref|ZP_05822664.1| bacterial regulatory protein LysR [Brucella abortus NCTC 8038]
 gi|260565280|ref|ZP_05835764.1| bacterial regulatory protein LysR [Brucella melitensis bv. 1 str.
           16M]
 gi|260566004|ref|ZP_05836474.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40]
 gi|260755218|ref|ZP_05867566.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260758438|ref|ZP_05870786.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260762264|ref|ZP_05874607.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884232|ref|ZP_05895846.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|261214481|ref|ZP_05928762.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261315671|ref|ZP_05954868.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261318109|ref|ZP_05957306.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261325559|ref|ZP_05964756.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261755448|ref|ZP_05999157.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|265984543|ref|ZP_06097278.1| transcriptional regulator [Brucella sp. 83/13]
 gi|265989139|ref|ZP_06101696.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265991553|ref|ZP_06104110.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995391|ref|ZP_06107948.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|306838474|ref|ZP_07471315.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|306843154|ref|ZP_07475774.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306844500|ref|ZP_07477089.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|17982427|gb|AAL51694.1| transcriptional regulatory protein, lysr family [Brucella
           melitensis bv. 1 str. 16M]
 gi|23348350|gb|AAN30409.1| transcriptional regulator, LysR family [Brucella suis 1330]
 gi|62196519|gb|AAX74819.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82616410|emb|CAJ11473.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Brucella melitensis biovar Abortus 2308]
 gi|148370829|gb|ABQ60808.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840]
 gi|161336256|gb|ABX62561.1| Hypothetical protein BCAN_A1535 [Brucella canis ATCC 23365]
 gi|189020185|gb|ACD72907.1| Bacterial regulatory protein LysR [Brucella abortus S19]
 gi|225641342|gb|ACO01256.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|237789190|gb|EEP63401.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|256000077|gb|ACU48476.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260095975|gb|EEW79852.1| bacterial regulatory protein LysR [Brucella abortus NCTC 8038]
 gi|260151348|gb|EEW86442.1| bacterial regulatory protein LysR [Brucella melitensis bv. 1 str.
           16M]
 gi|260155522|gb|EEW90602.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40]
 gi|260668756|gb|EEX55696.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260672696|gb|EEX59517.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675326|gb|EEX62147.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260873760|gb|EEX80829.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|260916088|gb|EEX82949.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261297332|gb|EEY00829.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261301539|gb|EEY05036.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261304697|gb|EEY08194.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261745201|gb|EEY33127.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|262766504|gb|EEZ12293.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|263002337|gb|EEZ14912.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093572|gb|EEZ17597.1| bacterial regulatory protein LysR [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661336|gb|EEZ31597.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|264663135|gb|EEZ33396.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306275111|gb|EFM56867.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306286677|gb|EFM58235.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306406438|gb|EFM62676.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|326409516|gb|ADZ66581.1| Bacterial regulatory protein LysR [Brucella melitensis M28]
 gi|326539224|gb|ADZ87439.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 301

 Score =  332 bits (850), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 155/298 (52%), Positives = 211/298 (70%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ
Sbjct: 5   LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD+
Sbjct: 65  GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  S
Sbjct: 125 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GIA
Sbjct: 184 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|294852816|ref|ZP_06793489.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|294821405|gb|EFG38404.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
          Length = 306

 Score =  331 bits (849), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 155/298 (52%), Positives = 211/298 (70%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ
Sbjct: 10  LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 69

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD+
Sbjct: 70  GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 129

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  S
Sbjct: 130 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GIA
Sbjct: 189 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 248

Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 249 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 306


>gi|49474486|ref|YP_032528.1| LysR family transcriptional regulator [Bartonella quintana str.
           Toulouse]
 gi|49239990|emb|CAF26404.1| Transcription regulator (lysr family) [Bartonella quintana str.
           Toulouse]
          Length = 301

 Score =  330 bits (846), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 159/300 (53%), Positives = 214/300 (71%), Gaps = 2/300 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S DWDKLRVF+  A +GSFTHAA++LHLSQS+ISRQ+S LE EVG+ LF RHARGL LT
Sbjct: 3   LSLDWDKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSALEQEVGVFLFQRHARGLILT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R T +V  KLE+   +L ES  KP+G LR+ +T  +G   L  ++ EFL LYP
Sbjct: 63  EQGEILYRTTHDVLMKLESAHSQLSESCEKPAGNLRVTSTCGMGAGWLVEHMPEFLSLYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+IQL+ D+K++D++M +ADCA+RL+KP Q   LIQRKL TIHMH YA+ +Y+ N  +P
Sbjct: 123 DIRIQLLFDDKELDLTMRHADCAVRLQKP-QQPDLIQRKLFTIHMHVYASKNYIANYGKP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + ELD+H +I+FG+ +P  +   NWL    +  G  R S L++N+ +SI    +   G
Sbjct: 182 EKLSELDEHRIISFGESVPPYLSGLNWLEKAGKGDGSLRPSVLRINNVISIKNALMCDLG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV ++ +LVR+  D++  PSF  +FCYP ALKN  KLKAFR++IF KAR W F
Sbjct: 242 IAVLPDYIVDNDEHLVRLFPDMVDIPSFDTFFCYPYALKNLAKLKAFRDYIFSKARQWSF 301


>gi|254714718|ref|ZP_05176529.1| hypothetical protein BcetM6_15549 [Brucella ceti M644/93/1]
 gi|254717779|ref|ZP_05179590.1| hypothetical protein BcetM_15531 [Brucella ceti M13/05/1]
 gi|261219627|ref|ZP_05933908.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261322515|ref|ZP_05961712.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|260924716|gb|EEX91284.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261295205|gb|EEX98701.1| transcriptional regulator [Brucella ceti M644/93/1]
          Length = 301

 Score =  330 bits (846), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/298 (51%), Positives = 210/298 (70%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+  LE +VG+ LF+RHARGL LTEQ
Sbjct: 5   LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVGALEQDVGVPLFHRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD+
Sbjct: 65  GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  S
Sbjct: 125 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GIA
Sbjct: 184 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|225627941|ref|ZP_03785977.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|260169165|ref|ZP_05755976.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99]
 gi|261758678|ref|ZP_06002387.1| bacterial regulatory protein LysR [Brucella sp. F5/99]
 gi|225617104|gb|EEH14150.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|261738662|gb|EEY26658.1| bacterial regulatory protein LysR [Brucella sp. F5/99]
          Length = 301

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 155/298 (52%), Positives = 211/298 (70%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ
Sbjct: 5   LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSVLEQDVGVPLFHRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD+
Sbjct: 65  GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  S
Sbjct: 125 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GIA
Sbjct: 184 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|153008995|ref|YP_001370210.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560883|gb|ABS14381.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 301

 Score =  328 bits (842), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 156/298 (52%), Positives = 210/298 (70%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ
Sbjct: 5   LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE  + +L ES  KP+G+LR+ TT+ LG   L   ++EF+ LYPDI
Sbjct: 65  GETLYRTAHDVLMKLENVRSKLAESKEKPTGRLRVTTTVGLGSGWLIERIQEFVELYPDI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+QLILDN+++D++M +ADCAIRLR+P Q   LIQR+L T+HMH YA+  Y+    +  S
Sbjct: 125 QLQLILDNEELDLTMRHADCAIRLRQP-QQPDLIQRRLFTVHMHVYASAGYVSKYGKLNS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I E+D+H ++TFG+  P  +   NWL    R  G  RI  LQVN+ LSI +    G GIA
Sbjct: 184 IDEIDQHRVVTFGEPAPSYLTGLNWLEIAGRADGSTRIPALQVNNLLSIRRAVQRGVGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|239832379|ref|ZP_04680708.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239824646|gb|EEQ96214.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 301

 Score =  328 bits (842), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 156/298 (52%), Positives = 210/298 (70%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ
Sbjct: 5   LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE  + +L ES  KP+G+LR+ TT+ LG   L   ++EF+ LYPDI
Sbjct: 65  GETLYRTAHDVLMKLENVRSKLAESKEKPTGRLRVTTTVGLGSGWLIERIQEFVELYPDI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+QLILDN+++D++M +ADCAIRLR+P Q   LIQR+L T+HMH YA+  Y+    +  S
Sbjct: 125 QLQLILDNEELDLTMRHADCAIRLRQP-QQPDLIQRRLFTVHMHVYASAGYVSKYGKLNS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I E+D+H ++TFG+  P  +   NWL    R  G  RI  LQVN+ LSI +    G GIA
Sbjct: 184 IDEIDQHRVVTFGEPAPSYLTGLNWLEIAGRTDGSSRIPALQVNNLLSIRRAVQRGVGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|49475889|ref|YP_033930.1| LysR family transcriptional regulator [Bartonella henselae str.
           Houston-1]
 gi|49238697|emb|CAF27948.1| Transcription regulator (lysr family) [Bartonella henselae str.
           Houston-1]
          Length = 301

 Score =  327 bits (839), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 156/298 (52%), Positives = 210/298 (70%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+  A +GSFTHAA+ LHLSQS+ISRQ+S LE EVG+ LF RHARGL LTEQ
Sbjct: 5   LDWDKLRVFHAAAEAGSFTHAAQMLHLSQSAISRQVSALEQEVGVSLFQRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R T +V  KLE+ + +L ES  KP+G LR+ +T  +G   L   + EFL LYPD+
Sbjct: 65  GEILYRTTHDVLMKLESARSQLSESCEKPAGNLRVTSTFGMGAGWLVERMPEFLSLYPDM 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+ D+K++D+ M YADCA+RL++P Q   LIQ+KL TIHMH YA+ +Y+ N  +P  
Sbjct: 125 RIQLLFDDKELDLMMRYADCAVRLQQP-QQPDLIQKKLFTIHMHVYASKNYIANYGKPEK 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ELD H +I+FG+ +P  +   NWL    +  G  R+S L++N+ +SI    +   GIA
Sbjct: 184 LSELDNHRIISFGEPVPTYLSGLNWLEKAGKSDGALRLSILRINNIISIKNALMRDLGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDYIV ++ +LVR+  D++  PSF  +FCYP ALKN  KLKAFR++IF KAR W F
Sbjct: 244 VLPDYIVDNDEHLVRLFPDMVDIPSFDTFFCYPYALKNLAKLKAFRDYIFSKARQWSF 301


>gi|319781967|ref|YP_004141443.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167855|gb|ADV11393.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 298

 Score =  325 bits (833), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 154/299 (51%), Positives = 203/299 (67%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DWDKLRVF+  A +GSFTHAAE LHLSQS+ISRQ+S LE +VG+ LF RHARGL LT
Sbjct: 1   MALDWDKLRVFHAAAEAGSFTHAAETLHLSQSAISRQVSALEHDVGVPLFNRHARGLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L R   +V  KLET +  L E+  +PSG LR+ TT+ LG   L   ++EF+ LYP
Sbjct: 61  EQGEMLFRTAHDVLMKLETIKSRLTETKDRPSGVLRVTTTVGLGAGWLTERVQEFIELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I +QLIL N+++D++M  ADCAIRLR+P Q   LIQR+L T+H H YAAP Y+     P
Sbjct: 121 EISLQLILANEELDLTMRQADCAIRLRQP-QQPDLIQRRLFTVHFHLYAAPSYVAKHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL  H ++TFG  +P  + + NWL TV    G  R+  LQ+N  LSI +    G+G
Sbjct: 180 SSVAELKAHRIVTFGVPVPSHLSELNWLETVGDFEGGQRVPTLQINDILSIKRAVQGGAG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDY++  + +LV+++ +   PSF  YF YP+A+KN  KL  FR+FI  KAR W F
Sbjct: 240 IAMLPDYVISKDSDLVQLLPETEVPSFDTYFAYPDAMKNQAKLHVFRDFIIAKARSWSF 298


>gi|13472303|ref|NP_103870.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023049|dbj|BAB49656.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 298

 Score =  325 bits (832), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 154/299 (51%), Positives = 203/299 (67%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DWDKLRVF+  A +GSFTHAAE LHLSQS+ISRQ+S LE +VG+ LF RHARGL LT
Sbjct: 1   MALDWDKLRVFHAAAEAGSFTHAAETLHLSQSAISRQVSALEHDVGVPLFNRHARGLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L R   +V  KLET +  L E+  +PSG LR+ TT+ LG   L   ++EF+ LYP
Sbjct: 61  EQGEMLFRTAHDVLMKLETIKSRLTETKDRPSGVLRVTTTVGLGAGWLTERVQEFIELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I +QLIL N+++D++M  ADCAIRLR+P Q   LIQR+L T+H H YAAP Y+    +P
Sbjct: 121 EISLQLILANEELDLTMRQADCAIRLRQP-QQPDLIQRRLFTVHFHLYAAPSYVAKHGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL  H ++TFG  +P  + + NWL TV    G  R+  LQ+N  LSI +    G+G
Sbjct: 180 ASVSELRNHRIVTFGLPVPSHLSELNWLETVGDFEGGQRVPSLQINDILSIKRAVQGGAG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDY++  +  LV+++ +   PSF  YF YP+A+KN  KL  FR+FI  KAR W F
Sbjct: 240 IAMLPDYVINKDSGLVQLLPETEVPSFDTYFAYPDAMKNQAKLHVFRDFIIAKARSWSF 298


>gi|260464011|ref|ZP_05812206.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259030182|gb|EEW31463.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 298

 Score =  324 bits (831), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 154/299 (51%), Positives = 203/299 (67%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DWDKLRVF+  A +GSFTHAAE LHLSQS+ISRQ+S LE +VG+ LF RHARGL LT
Sbjct: 1   MALDWDKLRVFHAAAEAGSFTHAAETLHLSQSAISRQVSALEHDVGVPLFNRHARGLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L R   +V  KLET +  L E+  +PSG LR+ TT+ LG   L   ++EF+ LYP
Sbjct: 61  EQGEMLFRTAHDVLMKLETIKSRLTETKDRPSGVLRVTTTVGLGAGWLTERVQEFIELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I +QLIL N+++D++M  ADCAIRLR+P Q   LIQR+L T+H H YAAP Y+    +P
Sbjct: 121 EISLQLILANEELDLTMRQADCAIRLRQP-QQPDLIQRRLFTVHFHLYAAPSYVAKHGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL  H ++TFG  +P  + + NWL TV    G  R+  LQ+N  LSI +    G+G
Sbjct: 180 ASVAELRTHRIVTFGLPVPSHLSELNWLETVGDFEGGQRVPSLQINDILSIKRAVQGGAG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDY++  +  LV+++ +   PSF  YF YP+A+KN  KL  FR+FI  KAR W F
Sbjct: 240 IAMLPDYVISKDSGLVQLLPETEVPSFDTYFAYPDAMKNQAKLHVFRDFIIAKARSWSF 298


>gi|319898516|ref|YP_004158609.1| transcriptional regulator, LysR family [Bartonella clarridgeiae 73]
 gi|319402480|emb|CBI76023.1| transcriptional regulator, LysR family [Bartonella clarridgeiae 73]
          Length = 301

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 153/300 (51%), Positives = 208/300 (69%), Gaps = 2/300 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  DWDKLRVF+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG+ LF RHARGL LT
Sbjct: 3   LPLDWDKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSALEQDVGVPLFQRHARGLILT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+    ++  KLE  +++L ES  KP G LR+ +T  +G   L   + EFL LYP
Sbjct: 63  EQGEILYCTAHDILMKLENARLQLSESCQKPKGCLRVTSTFGMGAGWLAERMPEFLSLYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQL+ D++++D++M YADCAIRLR+P Q   LIQRKL T+HMH YA+ +Y+ N  +P
Sbjct: 123 DMQIQLLFDDEELDLTMRYADCAIRLRQP-QQPDLIQRKLFTVHMHVYASENYIANYGKP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + ELD+H +I+FG+ +P  +   NWL    R     R+S LQ+N+ +SI    +   G
Sbjct: 182 EKLSELDEHRIISFGEPVPPYLVGLNWLQKAGRSDDSVRVSMLQINNIISIKNALMRDLG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV ++  L+R+  D+   PSF  +FCY  ALKN+ KL AFR++IFLKAR W F
Sbjct: 242 IAVLPDYIVNNDEKLIRLFPDMSDIPSFDTFFCYSIALKNSAKLNAFRDYIFLKARKWSF 301


>gi|254503432|ref|ZP_05115583.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222439503|gb|EEE46182.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 302

 Score =  318 bits (816), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 147/301 (48%), Positives = 206/301 (68%), Gaps = 3/301 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++ DWDKLR+F+  A++GSFTHA + LH+SQS++SRQ+S LE ++G+ LF+RHARGL LT
Sbjct: 3   IAMDWDKLRIFHAAAQAGSFTHAGDTLHMSQSAVSRQVSALEHDLGVPLFHRHARGLLLT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLE  Q  L++S  KPSG L++ TT+ LG   L   ++ F  LYP
Sbjct: 63  EQGELLYRTAGDVLMKLEAVQSRLKDSKDKPSGVLKVTTTVGLGSTWLASRIRSFTDLYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++QLI DN ++D+SM  AD AIRLR+P Q   LIQRKL T+H H +A+P Y++    P
Sbjct: 123 DVELQLIFDNDELDLSMREADVAIRLRQPTQ-PDLIQRKLFTVHFHVFASPEYIQRFGSP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI+++D H +ITFG+  P  +   NWL T  R  G+PR S LQVN+ ++I +    G+G
Sbjct: 182 SSIEDIDDHRIITFGEQAPAYLRSMNWLVTAGRVDGKPRQSVLQVNNIIAIKRAVQTGAG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           IA+LPDYI+ +  NLV ++ED     PSF  YF YP  LKNT ++ AFR F+   A++W 
Sbjct: 242 IAMLPDYIIDNGRNLVPVLEDQEDKVPSFDTYFVYPSELKNTARVTAFREFLLKNAQNWV 301

Query: 299 F 299
           +
Sbjct: 302 Y 302


>gi|90418040|ref|ZP_01225952.1| possible transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337712|gb|EAS51363.1| possible transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 298

 Score =  315 bits (808), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 145/299 (48%), Positives = 205/299 (68%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DWDKLR+F+  A +GSFTHAA+ L+LSQS+ISRQ++ LE EVG  LF+RHARGL L+
Sbjct: 1   MALDWDKLRIFHAAAEAGSFTHAADVLNLSQSAISRQVAALEQEVGTPLFHRHARGLVLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L    S+V  +LE  +++L E+  KP+GKLR+ TT+ LG   L    KEFL LYP
Sbjct: 61  EQGELLFHTASDVLKRLEQVRMQLTETREKPTGKLRVTTTVGLGSGWLTERAKEFLELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++QL+ DN++ID++M  AD AIRLR+P Q   LIQR+L T+H+H YA+P YL     P
Sbjct: 121 ELELQLVFDNEEIDLTMRKADAAIRLRQP-QQPDLIQRRLFTVHLHVYASPAYLNRFGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++LD H +ITFG+  P  + + N L TV  P G+ R   LQ+N+ ++I      G G
Sbjct: 180 ETVEDLDNHRIITFGEPAPNYLRNLNTLETVGLPDGKSRSPILQINNLMAIRSAIESGIG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +ALLPDY++     LV+++ ++  P+F  Y CYPE ++N  KLK FR+F+  KAR W F
Sbjct: 240 LALLPDYMIDKRVKLVQVLPEMEMPTFDTYLCYPEQMRNAAKLKVFRDFLISKARTWAF 298


>gi|114704991|ref|ZP_01437899.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Fulvimarina pelagi HTCC2506]
 gi|114539776|gb|EAU42896.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Fulvimarina pelagi HTCC2506]
          Length = 298

 Score =  315 bits (806), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 146/299 (48%), Positives = 204/299 (68%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DWDKLR+F+  A +GSFT A+E L LSQS+ISRQ++ LE+EVG+ LF+RHARGL L+
Sbjct: 1   MALDWDKLRIFHAAAEAGSFTRASENLGLSQSAISRQVAALESEVGVPLFHRHARGLILS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L +  ++V  +LE  +++L E+  +PSGKLR+ TT+ LG   L    KEFL LYP
Sbjct: 61  EQGEMLFQTANDVLQRLEAVRMQLTETKERPSGKLRVTTTVGLGSGWLTERSKEFLELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++QL+ DN++ID++M  AD AIRLR+P Q   LIQR+L T+H+H YAAP Y+     P
Sbjct: 121 DIELQLMFDNEEIDLTMRRADAAIRLRQP-QQPDLIQRRLFTVHLHVYAAPGYITRFGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +LD H +ITFG+  P  + + N L TV    G PR   LQ+N+ ++I      G G
Sbjct: 180 ETIDDLDHHRIITFGEPAPPYLRNLNTLETVGIDNGHPRSPILQINNLIAIRSAIESGIG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           + LLPDY++     LV+I+ ++  P+F  Y CYPE L+N+ KL+ FR+F+  KAR W F
Sbjct: 240 LGLLPDYMIDQRTKLVQILPEIEMPTFDTYLCYPEELRNSAKLRVFRDFLISKARTWTF 298


>gi|319405281|emb|CBI78895.1| transcriptional regulator, LysR family [Bartonella sp. AR 15-3]
          Length = 301

 Score =  314 bits (805), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 150/300 (50%), Positives = 209/300 (69%), Gaps = 2/300 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  DW+KLRVF+  A +GSFTHAA++LHLSQS+ISRQ+S LE +V + LF RHARGL LT
Sbjct: 3   LPLDWNKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSSLEQDVRVPLFQRHARGLILT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   ++  KLE T+++L ES  KP+G LR+ +T  +G   L  ++ EFL LY 
Sbjct: 63  EQGEILYRTAHDILMKLENTRLQLSESCEKPTGHLRVTSTFGIGAGWLVEHIPEFLSLYS 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQL+ D++++D++M YADCAIRL +P Q   LIQRKL T+HMH YA+ +Y+ N  +P
Sbjct: 123 DMQIQLLFDDEELDLTMRYADCAIRLHQP-QQPDLIQRKLFTVHMHVYASENYIANYGKP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + ELD+H +I+FG+ +P  +   NWL    +     R+S LQ+N+ +SI    +   G
Sbjct: 182 EKLSELDQHRIISFGEPVPPYLVGLNWLQRAGKSGDSVRVSILQINNIISIKNALMRDLG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV ++  L+R+  D+   PSF  +FCYP ALKN+ KL  FR++IFLKAR W F
Sbjct: 242 IAVLPDYIVNNDEKLMRLFPDMSDIPSFDTFFCYPIALKNSAKLNVFRDYIFLKARKWSF 301


>gi|304391324|ref|ZP_07373268.1| transcriptional regulator, LysR family [Ahrensia sp. R2A130]
 gi|303296680|gb|EFL91036.1| transcriptional regulator, LysR family [Ahrensia sp. R2A130]
          Length = 298

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 148/299 (49%), Positives = 203/299 (67%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+ VA +GSFT A+E L+LSQS+ISRQIS LE EVG+ LF RHARGL LT
Sbjct: 1   MPMDWDKLRIFHKVANAGSFTRASEVLNLSQSAISRQISALEGEVGVPLFNRHARGLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L   T  +   LE   +EL +    P G LR+ TT+ LG   L   + EFL  YP
Sbjct: 61  EQGEILFGATEGITGTLEKVHVELTDFKGTPQGPLRVTTTVGLGSAWLAIRMHEFLDSYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q++L+L+N ++D+ M  ADCAIRL++P Q + +IQR+L T+H H YAAP+YL++   P
Sbjct: 121 DMQVELMLENNELDLGMRQADCAIRLQQP-QQADIIQRRLFTVHFHVYAAPNYLESHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++LD H L+ +GD  P  + D NWL +   P+G+ R   L++NS L+I +  V G+G
Sbjct: 180 EKIEDLDNHRLVAWGDGTPAYLGDLNWLLSAGMPLGKLRTPALKINSILAIQRAAVRGAG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +ALLPDY V  N  LV++MEDV  PSF  YF Y   L+ + +L+AFR+F+  KA++W+F
Sbjct: 240 VALLPDYAVGVNSPLVKVMEDVEIPSFDTYFAYSSELRRSARLEAFRDFLLEKAKEWRF 298


>gi|240850166|ref|YP_002971559.1| transcription regulator, LysR family [Bartonella grahamii as4aup]
 gi|240267289|gb|ACS50877.1| transcription regulator, LysR family [Bartonella grahamii as4aup]
          Length = 301

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 151/298 (50%), Positives = 210/298 (70%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+  A +GSFTHAA++LHLSQS++SRQ+S LE EVG+ LF RHARGL LTEQ
Sbjct: 5   LDWDKLRVFHAAAEAGSFTHAAQKLHLSQSAVSRQVSALEQEVGVSLFQRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE+ +++L ES  KP+G LR+ +T  +G   +   + EFL LYPD+
Sbjct: 65  GETLYRTAHDVLMKLESVRLQLSESYAKPTGHLRVTSTFGMGAGWIAERMPEFLSLYPDM 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+QL+L ++++D++M +ADCA+RL +P Q   LIQRKL TIHMH YA+  Y+ N  +P  
Sbjct: 125 QVQLLLSDEELDLTMCHADCAVRLHQP-QQPDLIQRKLFTIHMHVYASEKYIANYGKPEK 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +LD+H +I+FG+ +P  +   NWL    R  G  R+S LQ+N+ +SI    +   GIA
Sbjct: 184 LSDLDEHRIISFGEPVPPYLSGLNWLEKAGRSDGSLRVSVLQINNIISIKNALMRDLGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDYIV ++ +LVR+  D++  PSF  +FCYP  LKN  +L AFR++IFLKAR W F
Sbjct: 244 VLPDYIVNNDEHLVRLFPDMVDIPSFDTFFCYPYNLKNLARLNAFRDYIFLKARQWSF 301


>gi|118591794|ref|ZP_01549189.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Stappia aggregata IAM 12614]
 gi|118435437|gb|EAV42083.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Stappia aggregata IAM 12614]
          Length = 298

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 148/299 (49%), Positives = 196/299 (65%), Gaps = 3/299 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A++GSFTHA + LH+SQS++SRQ+S LE ++G+ LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAAAQAGSFTHAGDTLHMSQSAVSRQVSALEHDLGVPLFHRHARGLLLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R  ++V  KLE  Q  L +S  KPSG LR+ TT+ LG   L   ++ F+ LYPD+
Sbjct: 61  GELLYRTANDVLMKLEAVQSSLTDSKEKPSGALRVTTTVGLGSTWLTSRIRSFIDLYPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + LI D+ ++D+ M  AD AIRLR+P Q   LIQRKL T+H H YAAP YL+    P++
Sbjct: 121 DLHLIFDDDELDLGMREADVAIRLRQPTQ-PDLIQRKLFTVHFHVYAAPEYLQRFGTPVT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +LDKH LITFG+  P  +   NWL T  R    PR S L+ N+ ++I +    G GIA
Sbjct: 180 IDDLDKHRLITFGEQAPAYLRSMNWLETAGRVATSPRRSVLKANNIVAIKRAVQSGVGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDYI+  + NLV +M D     PSF  YF YP  LKNT ++ AFR F+   A  W F
Sbjct: 240 ILPDYIIDKSSNLVPVMTDQEDKVPSFDTYFVYPSELKNTARVTAFREFLLANAEGWVF 298


>gi|163867959|ref|YP_001609163.1| LysR family transcriptional regulator [Bartonella tribocorum CIP
           105476]
 gi|161017610|emb|CAK01168.1| transcriptional regulator, LysR family [Bartonella tribocorum CIP
           105476]
          Length = 301

 Score =  311 bits (796), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 150/298 (50%), Positives = 210/298 (70%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+  A +GSFTHAA++LHLSQS++SRQ+S LE EVG+ LF RHARGL LT+Q
Sbjct: 5   LDWDKLRVFHAAAEAGSFTHAAQKLHLSQSAVSRQVSALEQEVGVSLFQRHARGLILTQQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE+ +++L ES  KP+G LR+ +T  +G   +   + EFL LYPD+
Sbjct: 65  GETLYRTAHDVLMKLESVRLQLSESYAKPTGHLRVTSTFGMGAGWIAERMPEFLSLYPDM 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+QL+L ++++D++M +ADCA+RL +P Q   LIQRKL TIHMH YA+  Y+ N  +P  
Sbjct: 125 QVQLLLSDEELDLTMCHADCAVRLHQP-QQPDLIQRKLFTIHMHVYASEKYIANYGKPEK 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +LD+H +I+FG+ +P  +   NWL    R  G  R+S LQ+N+ +SI    +   GIA
Sbjct: 184 LSDLDEHRIISFGEPVPPYLSGLNWLEKAGRNDGSLRVSVLQINNIISIKNALMRDLGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDYIV ++ +LVR+  D++  PSF  +FCYP  LKN  +L AFR++IFLKAR W F
Sbjct: 244 VLPDYIVNNDEHLVRLFPDMVDIPSFDTFFCYPYNLKNLARLNAFRDYIFLKARQWSF 301


>gi|319403842|emb|CBI77428.1| transcriptional regulator, LysR family [Bartonella rochalimae ATCC
           BAA-1498]
 gi|319406853|emb|CBI80488.1| transcriptional regulator, LysR family [Bartonella sp. 1-1C]
          Length = 301

 Score =  308 bits (789), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 153/300 (51%), Positives = 212/300 (70%), Gaps = 2/300 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  DW+KLRVF+  A +GSFTHAA++LHLSQS+ISRQ+S LE +V + LF RHARGL LT
Sbjct: 3   LPLDWNKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSALEQDVRVPLFQRHARGLILT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   ++  KLE T+++L ES  KP+G LR+ +T  +G   L  ++ EFL LYP
Sbjct: 63  EQGEILYRTAHDILMKLENTRLQLSESREKPTGHLRVTSTFGMGTGWLAEHIPEFLNLYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQL+LD++++D++M YADCAIRLR+P Q   LIQRKL T+HMH YA+ +Y+ N  +P
Sbjct: 123 DMQIQLLLDDEELDLTMRYADCAIRLRQP-QQPDLIQRKLFTVHMHVYASENYIANYGKP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + ELD+H +I+FG+ +P  +   NWL    +     R+S LQ+N+ +SI    +   G
Sbjct: 182 EKLSELDEHRIISFGEPVPPYLVGLNWLQRAGKSDDSVRVSILQINNIVSIKNALMRDLG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV ++  L+R+  D+I  PSF  +FCY  ALKN+ KL  FR++IFLKAR W F
Sbjct: 242 IAVLPDYIVNNDEKLIRLFPDMIDIPSFDTFFCYSAALKNSAKLNVFRDYIFLKARKWSF 301


>gi|121602215|ref|YP_989259.1| LysR family transcriptional regulator [Bartonella bacilliformis
           KC583]
 gi|120614392|gb|ABM44993.1| transcriptional regulator, LysR family [Bartonella bacilliformis
           KC583]
          Length = 301

 Score =  308 bits (788), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 148/298 (49%), Positives = 201/298 (67%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+  A +GSFTHAA++LHLSQS+ISRQ++ LE +VG  LF RHARGL LTEQ
Sbjct: 5   LDWDKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVAALEQDVGAPLFQRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE  + +L ES  KP+G+LR+ +T  +G   +   + EFL LYPD+
Sbjct: 65  GEILYRTAHDVLIKLENARSQLTESREKPAGRLRVTSTFGMGAKWIAECMPEFLNLYPDM 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQ++LD+K +D++M  ADCAIRL +P Q   LIQRKL T+HMH YA+  Y+    +P  
Sbjct: 125 RIQILLDDKALDLTMRDADCAIRLHQP-QQPDLIQRKLFTVHMHVYASEDYIARYGKPEE 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +LD H +I+FG+ +P  +   NWL    R     R   LQ+N+ LSI    +   GIA
Sbjct: 184 LSDLDGHRIISFGETVPPYLSGLNWLERAGRSNCSLRTPVLQINNILSIKNALMGNLGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDYIV ++   VR+  D+   PSF  +FCYP+AL+N+ KL  FR++IFLKAR W F
Sbjct: 244 VLPDYIVNNDEKFVRLFPDMTDIPSFDTFFCYPDALRNSAKLNVFRDYIFLKARKWSF 301


>gi|328542874|ref|YP_004302983.1| LysR family transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326412620|gb|ADZ69683.1| LysR family transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 298

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 145/300 (48%), Positives = 205/300 (68%), Gaps = 5/300 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A++GSFTHA + L++SQS++SRQ+S LE ++G+ LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAAAQAGSFTHAGDSLNMSQSAVSRQVSALEQDLGVPLFHRHARGLLLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   EV  KLE  +  L ++  KPSG LR+ TT+ LG   L   + EF+ LYP++
Sbjct: 61  GELLYRTAREVLMKLEAVRTRLTDTREKPSGVLRVTTTVGLGSTWLTSRINEFIDLYPEM 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++LI D+ ++D+SM  AD AIRLR+P Q   LIQRKL T+H H YA+P YL+    P S
Sbjct: 121 ELRLIFDDDELDLSMREADAAIRLRQPTQ-PDLIQRKLFTVHFHLYASPQYLQRYGTPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I++LD+H ++TFG+  P  + D NWL T  R   +PR   L+VN+ ++I +    G GIA
Sbjct: 180 IEDLDEHRIVTFGEHAPVYLRDMNWLETAGRSPADPRRCVLRVNNVVAIKRAVQRGVGIA 239

Query: 243 LLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDYI++++  LV +   +ED I PSF  YF YP  LKNT ++ AFR+F+  KA  W +
Sbjct: 240 ILPDYIIENDSALVPLLAELEDKI-PSFDTYFVYPSELKNTARITAFRDFLLAKAERWSY 298


>gi|254702216|ref|ZP_05164044.1| hypothetical protein Bsuib55_15351 [Brucella suis bv. 5 str. 513]
 gi|261752789|ref|ZP_05996498.1| LysR family transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261742542|gb|EEY30468.1| LysR family transcriptional regulator [Brucella suis bv. 5 str.
           513]
          Length = 282

 Score =  305 bits (780), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 144/279 (51%), Positives = 196/279 (70%), Gaps = 2/279 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ
Sbjct: 5   LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD+
Sbjct: 65  GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  S
Sbjct: 125 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GIA
Sbjct: 184 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNT 280
           +LPDY+      LV+++ ++   PSF  +FCYPEALKN+
Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNS 282


>gi|256160226|ref|ZP_05457920.1| hypothetical protein BcetM4_14551 [Brucella ceti M490/95/1]
 gi|256255432|ref|ZP_05460968.1| hypothetical protein BcetB_14323 [Brucella ceti B1/94]
 gi|261222636|ref|ZP_05936917.1| LysR family transcriptional regulator [Brucella ceti B1/94]
 gi|265998601|ref|ZP_06111158.1| LysR family transcriptional regulator [Brucella ceti M490/95/1]
 gi|260921220|gb|EEX87873.1| LysR family transcriptional regulator [Brucella ceti B1/94]
 gi|262553225|gb|EEZ09059.1| LysR family transcriptional regulator [Brucella ceti M490/95/1]
          Length = 279

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 142/276 (51%), Positives = 193/276 (69%), Gaps = 2/276 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTEQ
Sbjct: 5   LDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD+
Sbjct: 65  GETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  S
Sbjct: 125 QLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLNS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GIA
Sbjct: 184 IDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEAL 277
           +LPDY+      LV+++ ++   PSF  +FCYPEAL
Sbjct: 244 VLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEAL 279


>gi|307944265|ref|ZP_07659606.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307772611|gb|EFO31831.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 298

 Score =  298 bits (762), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 147/298 (49%), Positives = 199/298 (66%), Gaps = 3/298 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKLR+F+  A++GSFTHA + LH+SQS++SRQ+SGLE ++G+ LF+RHARGL LTEQG
Sbjct: 2   DWDKLRIFHAAAQAGSFTHAGDTLHMSQSAVSRQVSGLEHDLGVPLFHRHARGLLLTEQG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+R   +V  KLE  Q  L +S  KPSG LR+ TT+ LG   L   + EF+ LYP+++
Sbjct: 62  ELLYRTARDVLMKLEAVQGRLTDSKEKPSGVLRVTTTVGLGSTWLTSRISEFVDLYPEVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+ D+ ++D+ M  AD AIRLR+P Q   LIQRKL T+H H +A+P YL     P S 
Sbjct: 122 LQLLFDDDELDLGMREADVAIRLRQPTQ-PDLIQRKLFTVHFHVFASPDYLSRFGAPEST 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++LD H LITFG+  P  +   NWL T  R  G+PR   L++N+ L+I +    G GIA+
Sbjct: 181 EDLDNHRLITFGEQAPSFLRGMNWLQTAGRAPGDPRSPILRINNLLAIRRAVQSGIGIAM 240

Query: 244 LPDYIVKDNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           LPDYIV+  P L R++ D+    PSF  YF YP  LKNT ++ AFR F+   A  W+F
Sbjct: 241 LPDYIVERAPELKRVLSDIEEKVPSFDTYFVYPSELKNTARITAFREFLLSNAEKWEF 298


>gi|312114882|ref|YP_004012478.1| LysR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220011|gb|ADP71379.1| transcriptional regulator, LysR family [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 296

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 137/296 (46%), Positives = 203/296 (68%), Gaps = 1/296 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKLR+F+  A++GSFTHA E L +SQS++SR I+ LE ++ + LF+RHARGL LTEQG
Sbjct: 2   DWDKLRIFHAAAQAGSFTHAGETLAISQSAVSRHIASLERDLNVPLFHRHARGLVLTEQG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+R   EV+ KL TTQI L +S  KP+G+L++ TT+ LG   L   L EF+ LYPDIQ
Sbjct: 62  ELLYRTAQEVFSKLATTQILLADSRGKPNGQLKVTTTMALGTGWLTPRLNEFMKLYPDIQ 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QLILD++ ++++M  AD AI    P Q   L++RKL T+H H YA+  Y+K    P ++
Sbjct: 122 LQLILDDETLNLTMREADVAIWFGPPSQ-QDLVRRKLFTVHFHVYASVEYVKRNGRPRNL 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++LD+H ++T+G ++P   ++ NWL T  R   + R   +++NS L++ +  + G GIA+
Sbjct: 181 EDLDRHRILTYGGVLPSPFKEMNWLETAGRDGRDLRDPSVRINSLLALREAVLQGVGIAV 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           LPDY+ KD+P LV ++E+   P F  YF YP  LK+T ++ AFR+F+  K+R+W F
Sbjct: 241 LPDYLAKDHPRLVNVLEEAEMPVFDTYFVYPADLKDTKRVNAFRDFLVEKSREWSF 296


>gi|158422773|ref|YP_001524065.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158329662|dbj|BAF87147.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 296

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/297 (46%), Positives = 199/297 (67%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+V A +GSFTHA E L LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLKVFHVAAEAGSFTHAGETLGLSQSAVSRQVSALEQELKVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   EV+ KLE+ + +L +S  KP+G+LR+ TT+ LG + L   + EF+ LYPDI
Sbjct: 61  GELLYRTAHEVFLKLESARAQLTDSREKPNGELRVTTTVGLGTHWLTARVGEFVELYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQLIL ++++D++M  AD AIR+R+P+Q   L+QRKL T+H HAYA+  YLK   +P +
Sbjct: 121 RIQLILTDEELDLAMREADVAIRMRQPVQ-PDLVQRKLFTVHFHAYASVDYLKRHGQPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ELDKH ++  G  IP   +  NWL    R    PR+   +VNS L + +    G GI 
Sbjct: 180 LEELDKHRILLLGGPIPSYFQGLNWLEHAGRDGSTPRVPAFEVNSVLGLKRAVERGVGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LPDY+  D+ +LV++  D  TP    YF Y + +++  +++ FR+F+  KA+ W +
Sbjct: 240 TLPDYLSDDSSSLVQLFTDRETPQLEAYFTYAQEMRSVARIQVFRDFLISKAQRWSY 296


>gi|154246693|ref|YP_001417651.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160778|gb|ABS67994.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 296

 Score =  296 bits (758), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/296 (46%), Positives = 197/296 (66%), Gaps = 1/296 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKL+VF+V A +GSFTHA E L LSQS++SRQ+S LETE+ + LF+RHARGL LTEQG
Sbjct: 2   DWDKLKVFHVAAEAGSFTHAGETLGLSQSAVSRQVSALETELKVPLFHRHARGLILTEQG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+R   EV+ KLE+ + +L +S  KP+G+LR+ TT+ LG + L   + EF+ L+PDI+
Sbjct: 62  ELLYRTAHEVFLKLESARAQLTDSREKPNGELRVTTTVGLGTHWLTARVGEFVELFPDIR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           IQLIL ++++D++M  AD AIR+R+P+Q   L+QR+L T+H HAYA+  YLK    P SI
Sbjct: 122 IQLILTDEELDLAMREADVAIRMRQPVQ-PDLVQRRLFTVHFHAYASADYLKRHGHPRSI 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ELDKH ++  G  IP   +  NWL    R    PR+   +VNS L + +    G GI  
Sbjct: 181 DELDKHRILLLGGPIPPYFQGLNWLEHAGRDGSTPRVPAFEVNSVLGLKRAVERGVGIGT 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           LPDY+  D  +LV++  D  TP    YF Y + +++  +++ FR+F+  KA+ W +
Sbjct: 241 LPDYLSDDASSLVQLFTDRETPKLEAYFTYAQEMRSVARIQVFRDFLISKAQRWNY 296


>gi|298292339|ref|YP_003694278.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928850|gb|ADH89659.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 307

 Score =  295 bits (755), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 139/298 (46%), Positives = 200/298 (67%), Gaps = 2/298 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+V A +GSFTHA E L LSQS++SRQ+S LE E+ I LF+RHARGL LTEQ
Sbjct: 11  MDWDKLKVFHVAAEAGSFTHAGEALGLSQSAVSRQVSALEQELNIPLFHRHARGLILTEQ 70

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   EV+ KLE  + +L +S  KP+G+LR+ TT+ LG + L   + EFL LYPDI
Sbjct: 71  GDLLYRTAHEVFMKLEAARAKLTDSREKPNGELRVTTTMGLGTHWLTARIGEFLELYPDI 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I LIL + ++D++M  AD AIRLR+P+Q   LIQRKL T+H HA+A+  YLK    P +
Sbjct: 131 RITLILTDDELDLAMREADVAIRLRQPVQ-PDLIQRKLFTVHFHAFASAEYLKRNGHPRT 189

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGI 241
           ++ELD+H +I  G  IP   +D NWL       G+  R+  L VN+ L + +    G GI
Sbjct: 190 LEELDQHRIILLGGPIPSYFQDLNWLERAGVEDGQDGRVPSLSVNNVLGLKRAVERGVGI 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            ++PDY+++D+  LV++  +  TP+   YF YP+ +++  +++ FR+F+  KA+ W F
Sbjct: 250 GIVPDYLLEDSATLVQLFPERTTPTLEAYFVYPQEMRSVARIQVFRDFLVAKAQRWSF 307


>gi|254470526|ref|ZP_05083930.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211960837|gb|EEA96033.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 303

 Score =  292 bits (747), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 144/300 (48%), Positives = 195/300 (65%), Gaps = 7/300 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DWDKLR+F+  A++GSFTHA E L++SQS++SRQ+S LE E+G+ LF+RHARGL  TE
Sbjct: 5   SLDWDKLRIFHAAAQAGSFTHAGEALNMSQSAVSRQVSALEAELGVPLFHRHARGLIPTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   EV  KLET Q  L ++  KPSG LR+ TT+ LG   L   + EF+ LYPD
Sbjct: 65  QGELLYRTAREVLLKLETVQSRLTDTKEKPSGTLRVTTTVGLGSTWLTARVNEFVDLYPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++I  + ++D+ M  AD AIRLR+P Q   LIQRKL T+H H YA+P Y++    P 
Sbjct: 125 MRLEIICMDDELDLGMREADVAIRLRQPTQ-PDLIQRKLFTVHFHVYASPKYIERYGSPS 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +LD H LIT GD +   +   NWLAT   P GE R   L+VN+   I +    G GI
Sbjct: 184 TIDDLDHHRLITIGDNMASYLRAMNWLATAGLPNGERRDVSLRVNNLSGIKKAVQTGVGI 243

Query: 242 ALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A+LPDY+V+    + R+M    E++  PSF  YF YP  LKNT ++ AFR+F+   A  W
Sbjct: 244 AILPDYMVEPGAGIKRVMSVTQEEL--PSFDTYFVYPSELKNTARVTAFRDFLVSYAERW 301


>gi|163761170|ref|ZP_02168247.1| putative LysR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162281721|gb|EDQ32015.1| putative LysR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 246

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 130/246 (52%), Positives = 177/246 (71%), Gaps = 1/246 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  DWDKLR+F+  A +GSFTHAAE+LHLSQS+ISRQ+S LE ++G KLF+RHARGL L+
Sbjct: 2   VPLDWDKLRIFHAAAEAGSFTHAAEKLHLSQSAISRQVSSLEMDIGAKLFHRHARGLILS 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L++   EV  KLE  + +L E+  +PSGKLR+ TT+ LGQ  L   ++EF  LYP
Sbjct: 62  EQGEILYQTAHEVLMKLEAVKNQLTETRERPSGKLRVTTTVGLGQAWLTEKVQEFQALYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+QL+LDN+++D++M  ADCAIRLR+P Q   LIQR++ T+H H YAAP YL    EP
Sbjct: 122 DVQVQLLLDNEELDVNMRQADCAIRLRQP-QQPDLIQRRMFTVHFHIYAAPSYLARHGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++LD H +ITFG+  P  + D NWL    R    PRI+ LQVN+  +I +  + G+G
Sbjct: 181 KTLEDLDNHRIITFGEPAPNYLRDVNWLEQAGRTPDNPRIAQLQVNNLPAIRRATINGAG 240

Query: 241 IALLPD 246
           I+LLPD
Sbjct: 241 ISLLPD 246


>gi|115525960|ref|YP_782871.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115519907|gb|ABJ07891.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisA53]
          Length = 307

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 139/296 (46%), Positives = 194/296 (65%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 11  MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG L+I TT  LG + L   L EF  LYP+I
Sbjct: 71  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGLGIHWLVPRLGEFTALYPEI 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY +P Y+K+   P +
Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKHFGTPRT 189

Query: 183 IQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ELD H LI  GD  IP  +++ NWL    R    PR    +VN+ L +++ C  G GI
Sbjct: 190 LEELDNHRLIVLGDTQIPPHLQNRNWLIDAGRNGAGPREPYFKVNNILGVIRACQQGLGI 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+V++N  LV++  +  +     YF YPE LK+  +++ FR+FI  KA+ W
Sbjct: 250 AALPDYLVEENNKLVQLFGEADSIQLDTYFVYPEELKSVARVQVFRDFIVSKAQRW 305


>gi|90425322|ref|YP_533692.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90107336|gb|ABD89373.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 307

 Score =  278 bits (710), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 137/296 (46%), Positives = 194/296 (65%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 11  MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG L++ TT  LG + L   L EF  LYP+I
Sbjct: 71  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKVTTTPGLGIHWLVPRLGEFTALYPEI 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY AP Y+K+   P +
Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCAPEYIKHFGTPRT 189

Query: 183 IQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ELD H LI  GD  +P  +++ NWL    R    PR    +VN+ L +++ C  G GI
Sbjct: 190 LEELDNHRLIILGDTQVPPYLQNRNWLIDAGRNGAGPREPYFKVNNILGVIRACQQGLGI 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+V++N  LV++  +  +     YF YPE LK+  +++ FR+F+  KA+ W
Sbjct: 250 AALPDYLVEENNRLVQLFGEQDSIQLDTYFVYPEELKSVARVQVFRDFVVSKAQRW 305


>gi|220925657|ref|YP_002500959.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219950264|gb|ACL60656.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 296

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 193/297 (64%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDK+R+F  VA +GSFT A + + LSQS++SRQIS LE E+   LF+RHARGL LTEQ
Sbjct: 1   MDWDKIRIFLNVAEAGSFTKAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   ++  +LETT+  L E+S +PSG L++ TT+ LG   L   + EFL L+P++
Sbjct: 61  GDLLFRAARDMKMRLETTRARLVETSERPSGDLKVTTTVGLGTAWLSQRVSEFLDLHPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+LIL ++++D++M  AD AIRLR+P Q   LIQR+L T+H H +A+  Y+K   EP S
Sbjct: 121 RIELILTSEELDLAMREADVAIRLRRPAQ-PDLIQRRLFTVHYHVFASTEYIKRFGEPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +LD+H +++FG   P  +   +WL+T  R   EPR     VN+  ++      G+GI 
Sbjct: 180 IDDLDRHRIVSFGGDQPSYLMATHWLSTAGREGREPRTVHFTVNNISALQVAVETGAGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY    NP LV+++ D+  P+   Y  Y E +++  +++AFR+F+  KA+ W +
Sbjct: 240 ILPDYAANGNPQLVQVLRDIEMPNLESYLVYAEEMRSVARVQAFRDFLVAKAQRWTY 296


>gi|170741949|ref|YP_001770604.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196223|gb|ACA18170.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 296

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/297 (43%), Positives = 193/297 (64%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDK+R+F  VA +GSFT A + + LSQS++SRQIS LE E+   LF+RHARGL LTEQ
Sbjct: 1   MDWDKIRIFLNVAEAGSFTKAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   ++  +LETT+  L E+S +PSG L++ TT+ LG   L   + EFL L+P++
Sbjct: 61  GDLLFRAARDMKMRLETTRARLVETSERPSGDLKVTTTVGLGTAWLSQRVSEFLDLHPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+LIL N+++D++M  AD AIRLR+P Q   LIQR+L T+H H +A+  Y+K   EP S
Sbjct: 121 RIELILTNEELDLAMREADVAIRLRRPAQ-PDLIQRRLFTVHYHVFASLEYIKRFGEPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I++LDKH +++FG   P  +   +WL+T  R   EPR     VN+  ++      G+GI 
Sbjct: 180 IEDLDKHRIVSFGGDQPSYLMATHWLSTAGREGREPRNVHFTVNNISALQVAVETGAGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY    NP L +++ D+  P+   Y  Y E +++  +++AFR+F+  KA+ W +
Sbjct: 240 ILPDYAANGNPLLQQVLRDIEMPNLESYLVYAEEMRSVARVQAFRDFLVAKAQRWTY 296


>gi|170746996|ref|YP_001753256.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653518|gb|ACB22573.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 296

 Score =  272 bits (695), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 131/297 (44%), Positives = 193/297 (64%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDK+R+F  VA +GSFT A + + LSQS++SRQIS LE E+   LF+RHARGL LTEQ
Sbjct: 1   MDWDKIRIFLNVAEAGSFTKAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLLLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   ++  +LE T+  L E+S +P+G L++ TT+ LG + L   + EFL LYPD+
Sbjct: 61  GDLLFRAARDMKLRLENTRARLVETSERPTGDLKVTTTVGLGTSWLSQRVGEFLDLYPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+LIL N+++D++M  AD AIR+R+P Q   LIQR+L T+H HA+A+P Y+K   EP +
Sbjct: 121 RIELILTNEELDLAMREADVAIRMRRPAQ-PDLIQRRLFTVHYHAFASPDYVKRFGEPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+ELD H L++FG   P  +   +WLA   R   E R   L VN+  ++ +    G+GI 
Sbjct: 180 IEELDDHRLVSFGGNEPSYLLAAHWLADAGREGRERRQVHLTVNNIGALQRAMEAGAGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY V     LV+++ +   PS   Y  Y E +++  +++AFR+F+  KA+ W +
Sbjct: 240 ILPDYAVDGGQQLVQVLRETEMPSLESYLVYAEEMRSVARVQAFRDFLVSKAQRWTY 296


>gi|91975931|ref|YP_568590.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB5]
 gi|91682387|gb|ABE38689.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB5]
          Length = 297

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 135/296 (45%), Positives = 193/296 (65%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG L+I TT  LG + L   L EF  LYP+I
Sbjct: 61  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGLGIHWLVPRLGEFTALYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY +P Y+K+   P +
Sbjct: 121 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKHFGTPRT 179

Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ELD H LI   D  +P+ +++ +WL    R    PR    +VN+ L +++ C  G GI
Sbjct: 180 LEELDNHRLIMLSDSQVPQHLQNRSWLVDAGRNGSGPREPYFKVNNILGLVRACQQGLGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+V+D   LV++  +  +     YF YPE LK+  +++ FR+F+  KA+ W
Sbjct: 240 AALPDYLVEDPNRLVQLFGEEDSIQLDTYFVYPEELKSVARVQVFRDFVVNKAQRW 295


>gi|146338405|ref|YP_001203453.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146191211|emb|CAL75216.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 307

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/296 (44%), Positives = 189/296 (63%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 11  MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELAVSLFHRHARGLILTEQ 70

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG L+I TT  +G N L   L EF  +YP+I
Sbjct: 71  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGVGINWLIPRLGEFTAMYPEI 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL  I  HAY +P Y+K    P +
Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFAISFHAYCSPEYVKRFGTPRT 189

Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ELD H +I   D  +   +++ NWL    R    PR +  +VN+ L +++ C  G GI
Sbjct: 190 LDELDDHRIIMLADGQVAPHLQNRNWLVDAGRNGSGPREAYFKVNNILGLVRACQQGLGI 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+V++N  LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 250 AALPDYLVEENSRLVQLFGESDSIQLDTYFVYPEELKTVARVQVFRDFVVSKAQRW 305


>gi|316935641|ref|YP_004110623.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315603355|gb|ADU45890.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           DX-1]
          Length = 307

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 134/296 (45%), Positives = 191/296 (64%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 11  MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG L++ TT  LG + L   L EF  LYP+I
Sbjct: 71  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKVTTTPGLGIHWLVPRLGEFTALYPEI 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY +P Y+KN   P +
Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKNFGTPRT 189

Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ELD H LI   D  +P  +++ +WL    R    PR    +VN+ L +++ C  G GI
Sbjct: 190 LEELDDHRLIMLSDSQVPPHLQNRSWLIEAGRNGVGPREPYFKVNNILGLVRACQQGLGI 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+++D   LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 250 AALPDYLIEDTNRLVQLFGEEDSIQLDTYFVYPEELKTVARVQVFRDFVVNKAQRW 305


>gi|86748636|ref|YP_485132.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86571664|gb|ABD06221.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 307

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 135/296 (45%), Positives = 191/296 (64%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 11  MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG L+I TT  LG + L   L EF  LYP+I
Sbjct: 71  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGLGIHWLVPRLGEFTALYPEI 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY +P Y+K+   P +
Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKHFGTPRT 189

Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ELD H LI   D  +P  +++ +WL    R    PR    +VN+ L +++ C  G GI
Sbjct: 190 LEELDNHRLIMLSDSQVPPHLQNRSWLVDAGRNGSGPREPYFKVNNILGLVRACQQGLGI 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+V+D   LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 250 AALPDYLVEDPNRLVQLFGEEDSIQLDTYFVYPEELKTVARVQVFRDFVVNKAQRW 305


>gi|39937136|ref|NP_949412.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39650994|emb|CAE29517.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           CGA009]
          Length = 307

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 133/296 (44%), Positives = 191/296 (64%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 11  MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG L++ TT  LG + L   L EF  LYP+I
Sbjct: 71  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKVTTTPGLGIHWLVPRLGEFTALYPEI 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY +P Y+KN   P +
Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKNFGTPRT 189

Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++LD H LI   D  +P  +++ +WL    R    PR    +VN+ L +++ C  G GI
Sbjct: 190 LEDLDNHRLIMLSDSQVPPHLQNRSWLIEAGRSGMGPREPYFKVNNILGLVRACQQGLGI 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+++D   LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 250 AALPDYLIEDTNRLVQLFGEEDSIQLDTYFVYPEELKTVARVQVFRDFVVNKAQRW 305


>gi|163850525|ref|YP_001638568.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|218529222|ref|YP_002420038.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|240137590|ref|YP_002962061.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens AM1]
 gi|254560062|ref|YP_003067157.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|163662130|gb|ABY29497.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|218521525|gb|ACK82110.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
 gi|240007558|gb|ACS38784.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens AM1]
 gi|254267340|emb|CAX23172.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens DM4]
          Length = 296

 Score =  269 bits (687), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 128/297 (43%), Positives = 195/297 (65%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDK+R+F  VA +GSFT A + + LSQS++SRQIS LE E+   LF+RHARGL LTEQ
Sbjct: 1   MDWDKIRIFLNVAEAGSFTRAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   ++  +LE T+  L E+S +PSG LR+ TT+ LG + L   + EFL LYPD+
Sbjct: 61  GDLLFRAARDMKLRLENTRARLVETSERPSGDLRVTTTVGLGTSWLSQRVSEFLDLYPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L+L N+++D++M  AD AIR+R+P Q   LIQR+L T+H HA+A+P Y+K   EP +
Sbjct: 121 RIELVLTNEELDLAMREADIAIRMRRPAQ-PDLIQRRLFTVHYHAFASPDYVKRFGEPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +LD+H L++FG   P  +   ++LA++ R   E R     VN+  ++ +    G G+ 
Sbjct: 180 ISDLDEHRLVSFGGNEPSYLLATHYLASIGREGDERRPVHFTVNNITALHKAMEAGVGVG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY V  N +LV+++ +   P+   Y  Y E +++  +++AFR+F+  KA+ W +
Sbjct: 240 ILPDYAVDGNESLVQVLRESEMPTMESYLVYAEEMRSVARVQAFRDFLVNKAQRWTY 296


>gi|192292971|ref|YP_001993576.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192286720|gb|ACF03101.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 307

 Score =  268 bits (686), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 133/296 (44%), Positives = 191/296 (64%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 11  MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG L++ TT  LG + L   L EF  LYP+I
Sbjct: 71  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKVTTTPGLGIHWLVPRLGEFTALYPEI 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY +P Y+KN   P +
Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKNFGTPRT 189

Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++LD H LI   D  +P  +++ +WL    R    PR    +VN+ L +++ C  G GI
Sbjct: 190 LEDLDNHRLIMLSDSQVPPHLQNRSWLIEAGRNGMGPREPYFKVNNILGLVRACQQGLGI 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+++D   LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 250 AALPDYLIEDTNRLVQLFGEEDSIQLDTYFVYPEELKTVARVQVFRDFVVNKAQRW 305


>gi|27382492|ref|NP_774021.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355664|dbj|BAC52646.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 297

 Score =  268 bits (685), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 132/295 (44%), Positives = 189/295 (64%), Gaps = 2/295 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQG
Sbjct: 2   DWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R   +V+ +L+  + +L +S  +PSG L+I TT  +G N L   L EF  LYP+I+
Sbjct: 62  DLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGVGINWLIPRLGEFTALYPEIR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL  +  HAY +P Y+K    P ++
Sbjct: 122 ISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFAMGFHAYCSPDYIKRFGTPRTL 180

Query: 184 QELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +ELD H +IT  D      +++ NWL    R    PR +  +VN+ L +++ C  G GIA
Sbjct: 181 EELDSHRIITLSDGTFAPHLQNRNWLVEAGRNGSGPREAYFRVNNILGLVRACQQGLGIA 240

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LPDY++++   LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 241 ALPDYLIEEQSRLVQLFGESDSIQLDTYFVYPEELKTVARVQVFRDFVVSKAQRW 295


>gi|148258015|ref|YP_001242600.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410188|gb|ABQ38694.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 307

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 133/296 (44%), Positives = 189/296 (63%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 11  MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELAVSLFHRHARGLILTEQ 70

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG L+I TT  +G N L   L EF  LYP+I
Sbjct: 71  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGVGINWLIPRLGEFTSLYPEI 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL  I  HAY +P Y+K    P +
Sbjct: 131 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFAISFHAYCSPEYVKRFGTPRT 189

Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ELD H +I   D  +   +++ +WL    R    PR +  +VN+ L +++ C  G GI
Sbjct: 190 LDELDDHRIIMLADGQVAPHLQNRSWLVDAGRNGSGPREAYFRVNNILGLVRACQQGLGI 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+V++N  LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 250 AALPDYLVEENSRLVQLFGESDSIQLDTYFVYPEELKTVARVQVFRDFVVSKAQRW 305


>gi|188580293|ref|YP_001923738.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179343791|gb|ACB79203.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 296

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 195/297 (65%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDK+R+F  VA +GSFT A + + LSQS++SRQIS LE E+   LF+RHARGL LTEQ
Sbjct: 1   MDWDKIRIFLNVAEAGSFTRAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   ++  +LE T+  L E+S +PSG LR+ TT+ LG + L   + EFL LYPD+
Sbjct: 61  GDLLFRAARDMKLRLENTRARLVETSERPSGDLRVTTTVGLGTSWLSQRVSEFLDLYPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L+L N+++D++M  AD AIR+R+P Q   LIQR+L T+H HA+A+P Y+K   EP +
Sbjct: 121 RIELVLTNEELDLAMREADIAIRMRRPAQ-PDLIQRRLFTVHYHAFASPDYVKRFGEPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +LD+H L++FG   P  +   ++LA++ R   + R     VN+  ++ +    G G+ 
Sbjct: 180 IADLDEHRLVSFGGNEPSYLLATHYLASIGREGDDRRPVHFTVNNIAALHKAMEAGIGVG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY V  N +LV+++ +   P+   Y  Y E +++  +++AFR+F+  KA+ W +
Sbjct: 240 ILPDYAVDGNESLVQVLRESEMPTMESYLVYAEEMRSVARVQAFRDFLVNKAQRWTY 296


>gi|218670472|ref|ZP_03520143.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 237

 Score =  265 bits (678), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 126/238 (52%), Positives = 165/238 (69%), Gaps = 1/238 (0%)

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLET +++L E++  PSGKLR+ TT+ LGQ  L   ++EFL LYPD
Sbjct: 1   QGELLYRTAHDVLLKLETVKMQLTETTETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYPD 60

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP 
Sbjct: 61  VQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEPQ 119

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I++LD H +ITFG+  P  + D NWL    R     RI  LQ+NS  SI + C+LG G+
Sbjct: 120 KIEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRACLLGIGV 179

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A LPDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 180 ACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 237


>gi|92118380|ref|YP_578109.1| LysR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801274|gb|ABE63649.1| transcriptional regulator, LysR family [Nitrobacter hamburgensis
           X14]
          Length = 307

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 133/295 (45%), Positives = 185/295 (62%), Gaps = 2/295 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+  LE E+ + LF+RHARGL LTEQG
Sbjct: 12  DWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVGALEQELSVALFHRHARGLILTEQG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R T EV+ +L+  + +L +S  +PSG LR+ TT  +G N L   L EF  LYP+I+
Sbjct: 72  DLLFRTTHEVFIQLQAARAKLTDSRERPSGDLRVTTTPGIGINWLIPRLGEFTALYPEIR 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + LIL ++++D+SM  AD AIR  KP Q   LIQRKL  +  HAY +  Y+K+   P ++
Sbjct: 132 VSLILTDEELDLSMREADIAIRTHKPTQ-PDLIQRKLFAMGFHAYCSTEYVKHFGTPRAL 190

Query: 184 QELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +ELD H +I   D      +++ NWL    R    PR     VN+ L +   C  G GIA
Sbjct: 191 EELDGHRIILLTDTYASAHLQNRNWLIGAGRNGTGPREPYFTVNNILGLFSACKQGLGIA 250

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LPDY+V +N  LV++  +  +     YF YPE LK+  +++AFR+F+  KA+ W
Sbjct: 251 ALPDYLVGENNRLVQLFSESDSIQLDTYFVYPEELKSVARIQAFRDFVVSKAQRW 305


>gi|209884266|ref|YP_002288123.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
 gi|209872462|gb|ACI92258.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
          Length = 297

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/296 (44%), Positives = 188/296 (63%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG+L++ T+  LG N L   L EF  LYP+I
Sbjct: 61  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGELKVTTSPGLGINWLVPRLTEFTSLYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++++D+SM  AD A+R RKP Q   LIQRKL +I  HAY +P Y K    P +
Sbjct: 121 RLSLTLTDEELDLSMREADVALRTRKPTQ-PDLIQRKLFSIGFHAYCSPDYAKKFGTPRT 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++LD H LI     ++P  +++ NWL    R    PR    +VN+ L +++ C  G GI
Sbjct: 180 LEDLDNHRLIVLNAQILPPHLQNRNWLIEAGRNGSGPREPFFKVNNVLGLVRACQQGIGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+V +   LV++  +  +     YF YPE LK   +++ FR+FI  KA+ W
Sbjct: 240 AALPDYLVDETNRLVQLFGEDDSIQLDAYFVYPEELKAVARVQVFRDFIVSKAQRW 295


>gi|299132022|ref|ZP_07025217.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gi|298592159|gb|EFI52359.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 307

 Score =  262 bits (669), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 130/296 (43%), Positives = 188/296 (63%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 11  MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 70

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG+L++ T+  LG N L   L EF  LYP+I
Sbjct: 71  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGELKVTTSPGLGINWLVPRLTEFTSLYPEI 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++++D+SM  AD A+R RKP Q   LIQRKL +I  HAY +P Y K    P +
Sbjct: 131 RLALTLTDEELDLSMREADVALRTRKPTQ-PDLIQRKLFSIGFHAYCSPDYAKKFGTPRT 189

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ELD H LI      +P  +++ NWL    R    PR    +VN+ L +++ C  G GI
Sbjct: 190 LEELDNHRLIVLNAQNLPPHLQNRNWLIEAGRNGAGPREPFFKVNNVLGLVRACQQGIGI 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY++ +   L+++  +  +     YF YPE LK+  +++ FR+FI  KA+ W
Sbjct: 250 AALPDYLIDEANRLLQLFGEDDSIQLDAYFVYPEELKSVARVQVFRDFIVSKAQRW 305


>gi|182677057|ref|YP_001831203.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182632940|gb|ACB93714.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 294

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/297 (42%), Positives = 185/297 (62%), Gaps = 3/297 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A+ GSFTHA   L LSQS++SRQ+  LE ++ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAAAKVGSFTHAGSMLGLSQSAVSRQVGALEGDLQVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KL+  +  L ES  +P+G LRI T + +G   L   L EFL LYPDI
Sbjct: 61  GEVLYRTVQDVMAKLDQARTRLNESRERPNGDLRITTNVAIGTGWLTPRLGEFLDLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ LIL ++++D+ M  AD A+RLR+P+Q   LI+R+L T+H H YA+  Y+K   +P  
Sbjct: 121 RLHLILTDEELDLGMRAADVALRLREPVQ-PDLIRRRLFTVHYHLYASVDYVKYHGQPQR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I++LD H LI++       ++D N    + R    PR+S L V + +++ +    G GI 
Sbjct: 180 IEDLDDHRLISYDAAAASYLDDLNAPLHIGRNAKHPRLSALSVTNIIALQKAVEQGVGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY+      +V+IM D +TP    Y  YPE LK+  +++ FR+F+   A+ W F
Sbjct: 240 VLPDYL--KTSQVVQIMTDAVTPELECYLVYPEELKSVARIQVFRDFLVSSAQRWNF 294


>gi|163794423|ref|ZP_02188394.1| Transcriptional regulator [alpha proteobacterium BAL199]
 gi|159180147|gb|EDP64670.1| Transcriptional regulator [alpha proteobacterium BAL199]
          Length = 296

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 133/298 (44%), Positives = 185/298 (62%), Gaps = 3/298 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGDTLNLSQSAVSRQISHLEESLRVSLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +   +V+ KL TT+  L E   +P G LR+ TT+ LG N L   +  FL LYP+I
Sbjct: 61  GEILFQTARDVFAKLATTEAILAEGKDRPKGPLRLTTTVALGSNWLAPRVGAFLELYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + LIL++ ++D+SM  AD A+RL  P Q   LIQR L TI  H YAAP YLK    P +
Sbjct: 121 SLTLILNDSELDLSMRQADVALRLTPPRQ-PDLIQRHLKTIKFHLYAAPSYLKAAGVPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L  H LI +G+       + NWL  V   P G P  S L+VN+Y ++ +    G GI
Sbjct: 180 PADLAAHRLIIYGETAHPPFPNVNWLLDVASGPRGRPG-SVLRVNNYFAMYRAVQTGIGI 238

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A LPDY+ +++ NL+R++ D+  P    YF YPE L+++ ++   R+F+  +    +F
Sbjct: 239 AALPDYMAREDVNLIRVVPDLEGPQVPAYFVYPEELRHSKRITVLRDFLIQEVAKSQF 296


>gi|262276972|ref|ZP_06054765.1| transcriptional regulator [alpha proteobacterium HIMB114]
 gi|262224075|gb|EEY74534.1| transcriptional regulator [alpha proteobacterium HIMB114]
          Length = 294

 Score =  254 bits (650), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 126/297 (42%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL++F+ V ++GSFT A E L+LSQS+ISRQI  LE E+   LF RHARGL+LTE 
Sbjct: 1   MDWDKLKIFHAVTQAGSFTKAGEVLNLSQSAISRQIQSLEYELKCSLFQRHARGLSLTEN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++  +EV  K++  + +L E   KPSGKL + T +  G   L   +KEF    PDI
Sbjct: 61  GETLYKTANEVISKIKEVETDLVERKDKPSGKLVVTTVVGFGGIWLTPRIKEFRDKNPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L++ N ++D+S+  AD AI +R P Q  + IQRKLV I+ H Y +  Y+     P +
Sbjct: 121 EVELVVTNDELDLSLREADIAIWMRPPKQ-LNYIQRKLVDINYHIYGSSKYIAKKGTPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++LDKH+LIT+G   P  + +  W+  +     + R   ++VN+  S+M     G+G+A
Sbjct: 180 AKDLDKHDLITYGKGTPSPLSEKEWILKLGSK--QKRKPVMKVNNIYSLMLAVDAGAGLA 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LPDY+V DN  LVR++ +   P +  +F YP++LKN  ++KAFR+FIF K  +W F
Sbjct: 238 ALPDYMVGDNKGLVRVLPETKGPKYEAHFVYPQSLKNVARVKAFRDFIFNKVAEWNF 294


>gi|144898697|emb|CAM75561.1| redox-sensitive transcriptional activator [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 297

 Score =  252 bits (643), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 127/296 (42%), Positives = 184/296 (62%), Gaps = 3/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGEVLNLSQSAVSRQISALEESLNLPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   +++ KL  T+  L ES  +P G L+I TT+  G   L   +KEFL LYPDI
Sbjct: 61  GELLYKTARDIFSKLAMTEALLTESRERPQGPLKITTTVAFGSLWLTPRIKEFLDLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L + ++D++M  AD AIR+  P Q   LIQR L+T+H + YAAP YLK    P S
Sbjct: 121 AVTMVLYDGELDLAMREADVAIRMMPPRQ-PDLIQRHLLTMHYNVYAAPEYLKKYGMPKS 179

Query: 183 IQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++LD H+++ +GD   +   + + NWL          R   L+VN+   I +    G G
Sbjct: 180 AEDLDNHHIVIYGDDARVSPPVANVNWLLETGAQPSVQRKPVLEVNNIYGIYRAVKSGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +A LPDY+  +  NLV I+ ++  P    YF YPE L+++ ++  FR+F+  K ++
Sbjct: 240 VAALPDYMTTEADNLVHILPELKGPKLDAYFVYPEELRHSKRITVFRDFLLSKIQE 295


>gi|218662152|ref|ZP_03518082.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 245

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/218 (53%), Positives = 153/218 (70%), Gaps = 1/218 (0%)

Query: 82  IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYAD 141
           ++L E++  PSGKLR+ TT+ LGQ  L   ++EFL LYPD+QIQLILDN+++D++M +AD
Sbjct: 1   MQLTETTETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYPDVQIQLILDNEEVDVNMRHAD 60

Query: 142 CAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKC 201
           CAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP  I++LD H +ITFG+  P  
Sbjct: 61  CAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEPQKIEDLDNHRIITFGEPAPSY 119

Query: 202 MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMED 261
           + D NWL    R     RI  LQ+NS  SI + C+LG G+A LPDYIV  +P L+++  +
Sbjct: 120 LLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRACLLGIGVACLPDYIVGRDPGLIQLAIN 179

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
              PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 180 ADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 217


>gi|209963967|ref|YP_002296882.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
 gi|209957433|gb|ACI98069.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
          Length = 303

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 133/294 (45%), Positives = 186/294 (63%), Gaps = 1/294 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGETLNLSQSAVSRQISALEESLHVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   EV+ KL  T+  L ES   P G L++ TT+  G   L   ++EFL LYPD+
Sbjct: 61  GELLYRTAREVFAKLSMTEAMLSESKEHPKGPLKVTTTMAFGSTWLTPRVREFLSLYPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L+LD+ ++D+SM  AD AIR+  P Q   LIQR L+T+ +H YA   Y +    P S
Sbjct: 121 QLSLLLDDTELDLSMREADIAIRMSAPRQ-PDLIQRHLMTVRVHIYAHRAYAEKRGLPQS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ELD H++I +       + + NWL  V  P G  R + L+VNS  ++ +    G GIA
Sbjct: 180 LDELDHHDIIAYPGETRAPVSNINWLLHVGDPPGGERQTVLRVNSLYAMYRAVESGLGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LPDY+V  NP++VR++ DV  P    YF Y E L+++ ++  FR+F+  K ++
Sbjct: 240 SLPDYVVDGNPDIVRVLPDVSGPRIDAYFVYAEELRHSKRIAVFRDFLVRKVQE 293


>gi|300024873|ref|YP_003757484.1| LysR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526694|gb|ADJ25163.1| transcriptional regulator, LysR family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 295

 Score =  249 bits (636), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/291 (41%), Positives = 182/291 (62%), Gaps = 1/291 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A +GSFTHA EQLH+SQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAAAEAGSFTHAGEQLHMSQSAVSRQISALEANLKVTLFHRHARGLVLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R  +EV+ KL+T +  L +S+ KPSG LRI   I  G   L   L+EF  LYP+I
Sbjct: 61  GELLNRTVAEVFAKLQTAETLLSDSTSKPSGDLRITAPIGFGTIWLTPRLQEFGDLYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++LIL++  +DI M  AD AI  R+P Q + LI+R L    + A+A+  YL+    P +
Sbjct: 121 RVELILNDDQVDIGMRAADVAIWTREPEQ-ADLIRRSLFESRVRAFASAQYLRKHGTPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ELD+H +I +  +  + ++  +W+    R    PR + L+VNS ++I      G GI 
Sbjct: 180 LAELDQHRIIAYTGIPAQHLDAMSWIEKAGREGAAPREAALRVNSVVAIKYAIQAGIGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++PDY+  +  +LV ++ +   PS  + F Y E LK + K++  R+F+  K
Sbjct: 240 MIPDYMSDEQSDLVPVLAEFEQPSLNLIFAYAEELKASKKVQLLRDFLVSK 290


>gi|239787490|emb|CAX83960.1| Transcriptional regulator, LysR family [uncultured bacterium]
          Length = 296

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 127/291 (43%), Positives = 178/291 (61%), Gaps = 1/291 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GSFTHA E+L+LSQS+ISRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSFTHAGERLNLSQSAISRQISALEESLNVSLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V+ KL   +  L E+  +P G L I TT+  G   L   L++FL +YPDI
Sbjct: 61  GDLLYRTVHDVFAKLSQVEARLGENKDRPEGPLTITTTVAFGSLWLTPRLRQFLEMYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L++ ++D+ M  AD AIR   P Q  +LIQR L T+    YA+  YLK    P S
Sbjct: 121 EVSLLLNDSELDLGMREADVAIRFTPPRQ-PNLIQRPLYTLRYQVYASTEYLKKYGMPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H +IT+GD      ++ NWL       GE R   L+VN+   I +    G GIA
Sbjct: 180 PDDLSNHRIITYGDDGKLPADNVNWLLRAMAKEGETRRPVLRVNNIYGIFRAVRSGLGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP+Y   + PNLV+++ ++  P    YF YPE L++T ++  FR+F+  K
Sbjct: 240 ALPEYFDHEAPNLVQVLPELQGPLVEAYFVYPEELRHTKRIVVFRDFLIRK 290


>gi|75676638|ref|YP_319059.1| LysR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74421508|gb|ABA05707.1| transcriptional regulator, LysR family [Nitrobacter winogradskyi
           Nb-255]
          Length = 297

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 180/295 (61%), Gaps = 2/295 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+  LE E+ + LF+RHARGL LTEQG
Sbjct: 2   DWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVGALEQELSVPLFHRHARGLILTEQG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R   +V+ +L+  + +L +S  +PSG L++ TT+ +G N L   L EF  LYPDI+
Sbjct: 62  DLLFRTAHQVFMQLQAARAKLADSRERPSGDLKVTTTLGVGINWLIPRLGEFTSLYPDIR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L ++++D+SM  AD AIR  KP Q   LIQRKL  I  HAY +  Y+K    P ++
Sbjct: 122 ISLALTDEELDLSMREADIAIRTYKPTQ-PDLIQRKLFAICFHAYCSTEYVKRFGTPRTL 180

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +EL  H +I   +      +++ NWL    R    P      VN+ + +   C  G GIA
Sbjct: 181 EELSGHRIILLNETQASPHLQNRNWLIEAARNRSGPHEPYFTVNNIVGLFSACQQGLGIA 240

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LPDY+V +N  LV++  +  +     YF YPE LK+  +++ FR+F+  KA+ W
Sbjct: 241 ALPDYLVGENNLLVQLFGESDSIQLDTYFVYPEELKSVARVQVFRDFVVSKAQRW 295


>gi|114327383|ref|YP_744540.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315557|gb|ABI61617.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 294

 Score =  246 bits (627), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 130/291 (44%), Positives = 181/291 (62%), Gaps = 2/291 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGDTLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   EV+ KL  T+  L ES  KP+G+L++ TT+  G + L   L +FL  YPD+
Sbjct: 61  GESLNRTVREVFAKLAMTEALLTESKEKPAGRLKVTTTVGFGASWLAPRLHQFLAAYPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+LD+ D+D++M  AD AIR+  P Q   L+QR L+TI  H    P Y +    P S
Sbjct: 121 SLSLLLDDADLDLAMREADVAIRMHPPKQ-PDLVQRHLMTIKWHVVGTPAYFEQHGRPQS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++LD H LI FGD     + + NWLA   R  G PR   L VNS  ++      G GI 
Sbjct: 180 VEDLDNHRLILFGD-YHSPVNNINWLAEAGRKSGTPRRPLLDVNSLQAMALAIQSGLGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LPDY+  +   L R++ ++ +P   VYF YPE L+++ ++  FR+F+  K
Sbjct: 239 ALPDYMSNEMDGLERVLPEIESPKIDVYFVYPEELRSSKRVSVFRDFLLGK 289


>gi|329114634|ref|ZP_08243393.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter
           pomorum DM001]
 gi|326696114|gb|EGE47796.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter
           pomorum DM001]
          Length = 298

 Score =  245 bits (625), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 127/288 (44%), Positives = 179/288 (62%), Gaps = 2/288 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQG
Sbjct: 7   DWDKLRVFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEDVLQVPLFHRHARGLILTEQG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             LH+   EV+ KLE TQ  L ES  K +G+LR+ TT   G   L   L  F+   P+I 
Sbjct: 67  ETLHKTVREVFSKLEMTQTLLTESKEKAAGRLRVTTTTGFGNCWLMPRLHRFMADNPEID 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I LIL++ D+D+ M  AD A+R+  P Q   LIQR L    +  +AAP Y++    P S+
Sbjct: 127 ICLILEDNDLDLGMREADVAVRMHAPRQ-PDLIQRHLADFSLPIFAAPLYIEKYGMPKSL 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +E+ +H L+ FG+  P      NWLA   R  G  +I+ L+VNS  ++      G GI  
Sbjct: 186 EEIKEHQLVLFGEHHPPVAH-VNWLAQACRNDGSTQIARLEVNSMAAMASAIAAGLGIGS 244

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +P Y  K+ P+LV+I+ ++ TP+   YF YPE L+++ ++  FR+F+ 
Sbjct: 245 IPTYAAKEFPDLVQILPEITTPTVDAYFVYPEELRSSKRVAVFRDFLM 292


>gi|258542767|ref|YP_003188200.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633845|dbj|BAH99820.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636904|dbj|BAI02873.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639957|dbj|BAI05919.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643013|dbj|BAI08968.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646068|dbj|BAI12016.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649121|dbj|BAI15062.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652108|dbj|BAI18042.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655165|dbj|BAI21092.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 293

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 126/289 (43%), Positives = 178/289 (61%), Gaps = 2/289 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEDVLQVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  LH+   EV+ KLE TQ  L ES  K +G+LR+ TT   G   L   L  F+   P+I
Sbjct: 61  GETLHKTVREVFSKLEMTQTLLTESKEKAAGRLRVTTTTGFGNCWLMPRLHRFMADNPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I LIL++ D+D+ M  AD A+R+  P Q   LIQR L    +  +AAP Y++    P S
Sbjct: 121 DICLILEDNDLDLGMREADVAVRMHAPRQ-PDLIQRHLADFSLPIFAAPLYIEKYGMPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++E+ +H L+ FG+  P      NWLA   R  G  + + L+VNS  ++      G GI 
Sbjct: 180 LEEIKEHQLVLFGEHHPPVAH-VNWLAQACRTDGSTQTAQLEVNSMAAMASAIAAGLGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +P Y  K+ P+LV+I+ ++ TP+   YF YPE L+++ ++  FR+F+ 
Sbjct: 239 SIPTYAAKEFPDLVQILPEITTPTVDAYFVYPEELRSSKRVAVFRDFLM 287


>gi|167042012|gb|ABZ06748.1| putative LysR substrate binding domain protein [uncultured marine
           microorganism HF4000_141F21]
          Length = 296

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 120/297 (40%), Positives = 183/297 (61%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL++F+ VA +G+FT A   L+LSQS+ISRQI  LE E+  +LF RHARGL+LTE 
Sbjct: 1   MDWDKLKIFHAVAEAGNFTKATYILNLSQSAISRQIQSLEQELKTQLFERHARGLSLTEN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +   EV  KL+  +  L +   K SGKL + T + LG   L   ++EF+ L P+I
Sbjct: 61  GEYLFKTAREVISKLKDVESTLMDKKNKLSGKLTVTTVVSLGTTWLTPRIQEFMKLNPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+LI D+K++D+S   AD  I +R+P Q  + +Q+KL+ I+ H Y +  YL+    P +
Sbjct: 121 EIELIFDDKELDLSTRQADIGIWMRRPKQ-LNYVQKKLIDINYHIYGSTKYLEQNGHPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +QEL+KHN I++G   P  + + +W   +     + R   ++VNS   ++     G G+A
Sbjct: 180 LQELNKHNFISYGKGAPSPVFNPDWALKLGVKDNKKRKPVMKVNSIYGLLLAVQSGVGLA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LPDYI    PN+V+++  +  P    YF YP++L+NT ++ AFRNF++ K   W+F
Sbjct: 240 ALPDYITISVPNIVKVLPQIEGPKTEAYFVYPQSLRNTARVIAFRNFLYSKVSKWEF 296


>gi|288957074|ref|YP_003447415.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288909382|dbj|BAI70871.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 296

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 132/298 (44%), Positives = 184/298 (61%), Gaps = 3/298 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE  +G+ LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGETLNLSQSAVSRQISALEESLGVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  LHR   +V+ KL  T+  L ES   P G LR+ TT+  G   L   + EF+ +YPDI
Sbjct: 61  GELLHRTARDVFAKLSMTEAMLTESREHPKGPLRVTTTVAFGSTWLTPRINEFMSIYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L++D+ ++D++M  AD AIR+  P Q   LIQR L++I  H YA+  YLK    P +
Sbjct: 121 QLTLLIDDDELDLAMREADIAIRMNTPRQ-PDLIQRHLMSIRFHLYASQGYLKKKGTPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ELD H+LIT+   +   + + NW+  +  P    R   LQVNS  +I +    G GI 
Sbjct: 180 LAELDSHDLITYPPDVRAPIPNVNWVMEMGDP-SPNRKPILQVNSVYAIYRAVESGLGIG 238

Query: 243 LLPDYIVKD-NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LPD++V   + ++ RIM DV  P    YF Y E L+++ ++  FR+F+  K  +  F
Sbjct: 239 ALPDFLVDSFSKDVTRIMPDVEGPKVDAYFVYAEELRHSKRIAVFRDFLVKKVAETPF 296


>gi|162148926|ref|YP_001603387.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787503|emb|CAP57099.1| Transcriptional regulator LysR [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 294

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 123/289 (42%), Positives = 173/289 (59%), Gaps = 2/289 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   EV+ KL  TQ  L ES  K +G+LR+ TT   G   L   L  F+   PDI
Sbjct: 61  GETLNQTVREVFSKLAMTQSLLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFVDANPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I LIL++ D+D+ M  AD A+R+  P Q   L+QR L    +  YA+P YL+    P +
Sbjct: 121 SITLILEDNDLDLGMREADVAVRMHPPRQ-PDLVQRHLADFPLPIYASPGYLEEFGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H L+ FG   P  +   NWLA    P  E R + ++VNS  ++ +    G GI 
Sbjct: 180 LDDLSSHKLVLFGGYHPP-VPHINWLAEAGVPADEKRPARIEVNSLPAMAEAIASGVGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +P Y    +P+LV+I+ DV  P+   YF YPE L+ + ++  FR+F+ 
Sbjct: 239 SIPAYAAVLHPHLVKILSDVTVPTVDAYFVYPEELRTSKRVAVFRDFLL 287


>gi|148261425|ref|YP_001235552.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326404905|ref|YP_004284987.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|146403106|gb|ABQ31633.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
 gi|325051767|dbj|BAJ82105.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 300

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 130/290 (44%), Positives = 183/290 (63%), Gaps = 4/290 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 6   MDWDKLRVFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALAVPLFHRHARGLILTEQ 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+R   +V+ KL  T+  L ES  +P+G+L++ TT   G   L   L+ FL  YPD+
Sbjct: 66  GEQLNRTVRDVFAKLAMTEALLAESKERPAGRLKVTTTHSFGVVWLAPRLRAFLKQYPDV 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-REPL 181
            I L+LD+ D+D++M  AD AIR+  P Q   L+QR L  I    +A+  YL+   + P 
Sbjct: 126 SISLLLDDVDLDLAMREADVAIRMHPPRQ-PDLVQRSLGEIRWQIFASEDYLREVGKTPE 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSG 240
             ++LD H LI FGD  P    D NW+A++ RP G   R   L+VNS  +++     G G
Sbjct: 185 RPEDLDDHRLILFGDRKPPVA-DVNWIASIGRPDGAAQRAGALEVNSLQAMLVAIRSGIG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +PDY+ +D   LVRI+ +V  P   +YF YPE L+N+ ++  FR+F+
Sbjct: 244 IGAVPDYLTEDTTGLVRILPEVKAPKIDMYFVYPEELRNSKRVSVFRDFL 293


>gi|254455811|ref|ZP_05069240.1| transcriptional Regulator, LysR family [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082813|gb|EDZ60239.1| transcriptional Regulator, LysR family [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 295

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 120/295 (40%), Positives = 186/295 (63%), Gaps = 1/295 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKL++F+ VA +GSFT+A   L+LSQS+ISRQI  LE ++ ++LF RHARGLTLTE G
Sbjct: 2   DWDKLKIFHAVAEAGSFTNATINLNLSQSAISRQIQSLEQDLKVQLFERHARGLTLTENG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             + +   EV  KL+  +  L +   KP+GKL I T    G + L   ++EF+ L P+I+
Sbjct: 62  EYVFKTAHEVISKLKEVETSLGDQKNKPTGKLTITTVRSFGTHWLTPRIQEFMRLNPEIE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+ D+K++D+S   AD  I +R+P Q  + IQ+KLV I    Y +  YL+    P +I
Sbjct: 122 IELVFDDKELDLSTRQADIGIFMRRPKQ-LNYIQKKLVDIKYFIYGSNKYLEKFGMPKTI 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L+KH  I+FG   P  + + +W   +    G+ R S ++VNS + ++     G G+A 
Sbjct: 181 GDLNKHKFISFGKGAPSPVYNPDWALKLGMHDGKKRKSIMKVNSVMGLLLAVESGVGLAA 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LP+Y+V ++ N+++++     P    +F YP++LKNT +++AFRNF+F K  DWK
Sbjct: 241 LPEYLVSNSNNVIKVLPKSEGPITEAHFVYPQSLKNTARVQAFRNFLFSKIGDWK 295


>gi|209545318|ref|YP_002277547.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532995|gb|ACI52932.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 294

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 122/289 (42%), Positives = 173/289 (59%), Gaps = 2/289 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   EV+ KL  TQ  L ES  K +G+LR+ TT   G   L   L  F+   PDI
Sbjct: 61  GETLNQTVREVFSKLAMTQSLLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFMDANPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I LIL++ D+D+ M  AD A+R+  P Q   L+QR L    +  YA+P YL+    P +
Sbjct: 121 SITLILEDNDLDLGMREADVAVRMHPPRQ-PDLVQRHLADFPLPIYASPGYLEEFGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H L+ FG   P  +   NWLA    P  E R + ++VNS  ++ +    G GI 
Sbjct: 180 LDDLSSHKLVLFGGYHPP-VPHINWLAEAGVPADEKRPARIEVNSLPAMAEAIASGVGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +P Y    +P+LV+I+ +V  P+   YF YPE L+ + ++  FR+F+ 
Sbjct: 239 SIPAYAAVLHPHLVKILPEVTVPTVDAYFVYPEELRTSKRVAVFRDFLL 287


>gi|91763001|ref|ZP_01264965.1| probable transcriptional regulator [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717414|gb|EAS84065.1| probable transcriptional regulator [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 296

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/295 (40%), Positives = 185/295 (62%), Gaps = 1/295 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKL++F+ VA +GSFT+A   L+LSQS+ISRQI  LE ++ ++LF RHARGLTLTE G
Sbjct: 2   DWDKLKIFHAVAEAGSFTNATINLNLSQSAISRQIQSLEQDLKVQLFERHARGLTLTENG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +   +V  KL+  +  L +   KP+GKL I T    G + L   ++EF+ L P+I+
Sbjct: 62  EYLFKTAHDVISKLKEVESTLGDQKNKPTGKLTITTVRSFGTHWLTPRIQEFMTLNPEIE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+LI ++K++D+S   AD  I +R+P Q  + IQ+KLV +  + Y +  YL+    P +I
Sbjct: 122 IELIFEDKELDLSTRQADIGIFMRRPKQ-LNYIQKKLVDLKYYIYGSNKYLEKHGMPKTI 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L+KH  I+FG   P  + D +W   +    G+ R   ++VNS + ++     G G+A 
Sbjct: 181 SDLNKHKFISFGKGAPSPVYDPDWALKLGIKDGKKRKPVMKVNSVMGLLLAVEAGVGLAA 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LP+Y+V ++ N+++++     P    +F YP++LKNT ++ AFRNF+F K  DWK
Sbjct: 241 LPEYLVSNSNNIIKVLPSSEGPITEAHFVYPQSLKNTARITAFRNFLFSKIGDWK 295


>gi|167042084|gb|ABZ06819.1| putative LysR substrate binding domain protein [uncultured marine
           microorganism HF4000_141I21]
          Length = 296

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/296 (39%), Positives = 181/296 (61%), Gaps = 1/296 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKL++F+ VA +G+FT A   L+LSQS+ISRQI  LE E+  +LF RHARGL+LTE G
Sbjct: 2   DWDKLKIFHAVAEAGNFTKATYILNLSQSAISRQIQSLEQELKTQLFERHARGLSLTENG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +   EV  KL+  +  L +   K SGKL + T +  G   L   ++EF+ L P+I+
Sbjct: 62  EYLFKTAREVISKLKDVESTLMDKKNKLSGKLTVTTVVSFGTTWLTPRIQEFMKLNPEIE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+LI D+K++D+S   AD  I +R+P Q  + +Q+KL+ I+ H Y +  YL+    P ++
Sbjct: 122 IELIFDDKELDLSTRQADIGIWMRRPKQ-LNYVQKKLIDINYHIYGSTKYLEQIGHPKTL 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL+KHN I++G   P  + + +W   +     + R   ++VNS   ++     G G+A 
Sbjct: 181 QELNKHNFISYGKGAPSPVFNPDWALKLGVKDNKKRKPVMKVNSIYGLLLAVQSGVGLAA 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           LPDYI    PN+++++  +  P    YF YP++L+N  ++ AFRNF++ K   W+F
Sbjct: 241 LPDYITISVPNIIKVLPQIEGPKTEAYFVYPQSLRNMARVIAFRNFLYSKVSKWEF 296


>gi|71083931|ref|YP_266651.1| transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062]
 gi|71063044|gb|AAZ22047.1| probable transcriptional regulator [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 296

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/295 (40%), Positives = 185/295 (62%), Gaps = 1/295 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKL++F+ VA +GSFT+A   L+LSQS+ISRQI  LE ++ ++LF RHARGLTLTE G
Sbjct: 2   DWDKLKIFHAVAEAGSFTNATINLNLSQSAISRQIQSLEQDLKVQLFERHARGLTLTENG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +   +V  KL+  +  L +   KP+GKL I T    G + L   ++EF+ L P+I+
Sbjct: 62  EYLFKTAHDVISKLKEVESTLGDQKNKPTGKLTITTVRSFGTHWLTPRIQEFMTLNPEIE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+LI +++++D+S   AD  I +R+P Q  + IQ+KLV +  + Y +  YL+    P +I
Sbjct: 122 IELIFEDRELDLSTRQADIGIFMRRPKQ-LNYIQKKLVDLKYYIYGSNKYLEKHGMPKTI 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L+KH  I+FG   P  + D +W   +    G+ R   ++VNS + ++     G G+A 
Sbjct: 181 SDLNKHKFISFGKGAPSPVYDPDWALKLGIKDGKKRKPVMKVNSVMGLLLAVEAGVGLAA 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LP+Y+V ++ N+++++     P    +F YP++LKNT ++ AFRNF+F K  DWK
Sbjct: 241 LPEYLVSNSNNIIKVLPSSEGPITEAHFVYPQSLKNTARITAFRNFLFSKIGDWK 295


>gi|85715967|ref|ZP_01046944.1| Transcriptional regulatory protein, LysR family protein
           [Nitrobacter sp. Nb-311A]
 gi|85697165|gb|EAQ35046.1| Transcriptional regulatory protein, LysR family protein
           [Nitrobacter sp. Nb-311A]
          Length = 297

 Score =  238 bits (607), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 129/295 (43%), Positives = 181/295 (61%), Gaps = 2/295 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+  LE E+ + LF+RHARGL LTEQG
Sbjct: 2   DWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVGALEQELSVPLFHRHARGLILTEQG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R   EV+ +L+  + +L +S  +PSG L++ TT  +G N L   L EF  LYP+I+
Sbjct: 62  DLLFRTAHEVFMQLKAARAQLADSRERPSGDLKVTTTPGVGINWLIPRLGEFTSLYPEIR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L ++++D+SM  AD AIR+ KP Q   LIQRKL  I  HAY +  Y+K    P ++
Sbjct: 122 ISLLLTDEELDLSMREADIAIRIYKPTQ-PDLIQRKLFAICFHAYCSTEYVKRFGTPRTL 180

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +EL  H +I   +      +++ NWL    R    P      VN+ L +   C  G GIA
Sbjct: 181 EELSGHRIILLNETQASPHLQNRNWLIEAARSRSGPHEPYFTVNNILGLFSACQQGLGIA 240

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LPDY+V  N  LV++  +  +     YF YPE LK+  +++AFR+F+  KA+ W
Sbjct: 241 ALPDYLVGGNNLLVQLFSESDSIQLDTYFVYPEELKSVARVQAFRDFVVSKAQRW 295


>gi|330813815|ref|YP_004358054.1| transcriptional regulator, LysR family [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486910|gb|AEA81315.1| transcriptional regulator, LysR family [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 294

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 189/297 (63%), Gaps = 3/297 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL++F+ V ++ SFT AAE LHLSQS+ISRQI  LE E+   LF RHARGL+LT+ 
Sbjct: 1   MDWDKLKIFHAVTQATSFTKAAEVLHLSQSAISRQIQSLEHELKCTLFERHARGLSLTDN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++  +EV  K++  + +L +   KPSGK+ + T +  G   L   ++EF+   PDI
Sbjct: 61  GELLYKTANEVISKIKDVESDLMDEKHKPSGKIVVTTVVGFGGIWLTPRIQEFMEKNPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++LI+ ++++D+S+  AD AI +R+P Q  + IQ+K++ I+ H Y++  YL+    P +
Sbjct: 121 EVELIVTDQELDLSIREADVAIWMRQPKQ-LNYIQKKIININYHIYSSSKYLEKHGVPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +ELDKH LIT+G   P  +    W+  V       R + ++VN+  S++     G G+A
Sbjct: 180 GKELDKHKLITYGRGTPSPLSQKEWILKVG--TKSKRKAVMKVNNIYSLLLAVESGVGLA 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LP+Y+    P LV+++ ++  P++  +F YP++LKN  ++KAFR+FIF K +  +F
Sbjct: 238 ALPNYMAVGKPGLVKVLPEITGPTYEAHFVYPQSLKNVARVKAFRDFIFSKIKQSEF 294


>gi|296532777|ref|ZP_06895456.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296266885|gb|EFH12831.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 297

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 123/290 (42%), Positives = 179/290 (61%), Gaps = 2/290 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQI  LE  + + LF+RHARGL LT
Sbjct: 1   MPLDWDKLRVFHAVAEAGSFTHAGESLNLSQSAVSRQIQALEEALAVPLFHRHARGLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   EV+ KL  T+  L ES  + +G+L++ TT   G   L   L++F+ L+ 
Sbjct: 61  EQGETLNRTVREVFAKLAMTEALLTESRERAAGRLKVTTTTGFGTAWLAPRLRKFMGLHS 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L+LD+ D+D++M  AD AIR+  P Q   LIQR + T       +P YLK    P
Sbjct: 121 DVTVTLLLDDADLDLAMREADVAIRMHPPKQ-PDLIQRHVATFGWKIVGSPDYLKGAGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++LD H LI +GD  P   E  NWL    R  G PR + ++VNS  +++     G G
Sbjct: 180 QRAEDLDAHRLIVYGDYRPPV-ESINWLLEAGRRPGSPRRAAVEVNSLPAMLHAVRSGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A LPDY+ +D  +L+ ++ D+ +P    YF YPE ++++ ++  FR+F+
Sbjct: 239 LAALPDYMSEDLRDLIPVLTDLKSPRIDAYFVYPEEMRHSKRVGVFRDFL 288


>gi|83594231|ref|YP_427983.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577145|gb|ABC23696.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 322

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 117/289 (40%), Positives = 174/289 (60%), Gaps = 1/289 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE  + + LF+RHARGL LTE
Sbjct: 25  NMDWDKLRVFHSVAEAGSFTHAGEALNLSQSAVSRQISALEESLKVALFHRHARGLILTE 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L     +V+ KL T + +L E+  +P G L I TT+  G   L   +K F+  YPD
Sbjct: 85  QGELLFDTVHDVFGKLATVEAKLGETKERPEGPLTITTTLSFGAIWLTPRIKRFMDRYPD 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L++ ++D++M  AD A+R   P Q   LIQR+L ++  H +A+P YLK    P 
Sbjct: 145 IDVTLALNDTELDLAMRQADVALRFMPPRQ-PDLIQRQLFSMPYHVFASPDYLKKHGTPR 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++LD H L+ +G+     + + +WL T     G  R   L+VN+   + +    G GI
Sbjct: 204 RVEDLDDHALVVYGEEFKPPVANMSWLLTAGTREGRARKPILKVNNIYGMFRAVESGLGI 263

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LPDY   +   LV+I+ +   P   ++F Y E L+++ ++  FR+F+
Sbjct: 264 AALPDYFSSEASTLVKILPEEHGPEMQIFFVYAEELRHSKRVAVFRDFL 312


>gi|83309761|ref|YP_420025.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82944602|dbj|BAE49466.1| Transcriptional regulator [Magnetospirillum magneticum AMB-1]
          Length = 297

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 120/293 (40%), Positives = 177/293 (60%), Gaps = 3/293 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGEVLNLSQSAVSRQISALEESLNLPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V+ KL  T+  L ES  +  G L+I TT+  G   L   +K+FL  YP+I
Sbjct: 61  GELLYRTARDVFSKLAMTEALLTESRERAQGPLKITTTVAFGSLWLTPRIKDFLDAYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L + ++D++M  AD AIR+  P Q   LIQR L++++   +AAP Y++    P S
Sbjct: 121 AVTMVLFDGELDLAMREADVAIRMMPPRQ-PDLIQRHLLSMNYAVFAAPSYIEKYGMPKS 179

Query: 183 IQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +LD H +I +GD   +   + + NWL         PR   L+VN+   I +    G G
Sbjct: 180 ADDLDNHRIIVYGDDTRVSAPVSNVNWLLEAGASPDRPRKPVLEVNNIYGIYRAVKSGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA +P+Y+  +   LV I+ ++  P    YF YPE L+++ ++  FR+F+  K
Sbjct: 240 IAAMPEYLRGEAEALVHILPELKGPKVETYFVYPEELRHSKRITVFRDFLLSK 292


>gi|114570697|ref|YP_757377.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114341159|gb|ABI66439.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 297

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/297 (38%), Positives = 181/297 (60%), Gaps = 2/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+ F+  A++GS T AAE L LSQS++SRQI+ LE ++G+ LF+RHARGL  TE 
Sbjct: 1   MDWDKLKTFHAAAQAGSLTKAAEMLGLSQSAVSRQIAALENDLGVTLFHRHARGLIPTEP 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+    E+  K+   +  +Q++  +PSG+L++     LG   L   L EF   YP+I
Sbjct: 61  GNLLYGAAHEIASKVAIAEAHVQDARDEPSGELKVTAPTALGAIWLAPRLAEFNTEYPNI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L+LD+ ++D++   A+  IR   P   + L+QRKL+++  H YA+  Y++    P +
Sbjct: 121 RIRLMLDDHELDLAGLEAEVGIR-PWPSTQNDLVQRKLLSVRQHLYASHDYVERKGSPKA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGI 241
             ELD H +I +G      +   +W A   R  G  PR + ++VN+   +M+    G GI
Sbjct: 180 PSELDDHAIIYYGPPQLAPIPGLDWAAKAGRADGATPRPAVIEVNTIYGVMKAVEAGMGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A LPDY+ ++N  LVR++ D+  P F V+F YP  L+ + ++ AFR+F+  +AR W+
Sbjct: 240 AALPDYVARENTKLVRVLPDLDGPDFEVFFVYPSELRGSRRIVAFRDFLIEQARRWQ 296


>gi|23014768|ref|ZP_00054568.1| COG0583: Transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 297

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 118/293 (40%), Positives = 177/293 (60%), Gaps = 3/293 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGEVLNLSQSAVSRQISALEESLNLPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   +V+ KL  T+  L ES  +  G L+I TT+  G   L   +K+FL  YP+I
Sbjct: 61  GELLYKTARDVFSKLAMTEALLTESRERAQGPLKITTTVAFGSLWLTPRIKDFLDAYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L + ++D++M  AD AIR+  P Q   LIQR L++++   +A+P Y++    P S
Sbjct: 121 SVTMVLFDGELDLAMREADVAIRMMPPRQ-PDLIQRHLLSMNYAVFASPAYIEKYGMPKS 179

Query: 183 IQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +LD H +I +GD   +   + + NWL         PR   L+VN+   I +    G G
Sbjct: 180 ADDLDNHRIIVYGDDTRVSAPVSNVNWLLEAGASPDRPRKPVLEVNNIYGIYRAVKSGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA +P+Y+  +   LV I+ ++  P    YF YPE L+++ ++  FR+F+  K
Sbjct: 240 IAAMPEYLRGEAEALVHILPELKGPKVEAYFVYPEELRHSKRITVFRDFLLSK 292


>gi|330994451|ref|ZP_08318376.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter
           sp. SXCC-1]
 gi|329758451|gb|EGG74970.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter
           sp. SXCC-1]
          Length = 294

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 125/289 (43%), Positives = 172/289 (59%), Gaps = 2/289 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   EV+ KL  TQ  L ES  K +G+LR+ TT   G   L   L  F+   PDI
Sbjct: 61  GETLNQTVREVFSKLAMTQSLLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFMETNPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I LIL++ D+D+ M  AD A+R+  P Q   LIQR L    +  YA+  YL +   P +
Sbjct: 121 SITLILEDNDLDLGMREADVAVRMHPPRQ-PDLIQRHLADFPLPIYASQSYLNDYGTPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++EL+ H L+ FG   P  +   NWLA    P  E R + L+VNS  ++      G GI 
Sbjct: 180 LEELNAHKLVLFGGYHPP-VPHINWLAETGVPSDERRQARLEVNSLAAMAGAIAAGIGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +P Y     PNLV+I+ +V  P+   YF YPE L+ + ++  FR+F+ 
Sbjct: 239 SIPLYAASHYPNLVKILPEVPLPTVDAYFVYPEELRTSKRVAVFRDFLL 287


>gi|114768949|ref|ZP_01446575.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114549866|gb|EAU52747.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
          Length = 299

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 115/290 (39%), Positives = 176/290 (60%), Gaps = 6/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA  GS THA + LHLSQS++SRQI  LE ++ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHSVADVGSLTHAGDVLHLSQSAVSRQIRALEEKLNVTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+  TS++  +LET +  +++S  +  G+LR+ TT   G   L   +      YPD+
Sbjct: 61  GELLYEATSQMSKRLETAEARIRDSEDEVFGELRVTTTTGFGTLWLAPRINRLYEQYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I LIL+ + +D+ M  AD AIR+++P Q + L++R+L+ + M  YA   YL     P S
Sbjct: 121 NIDLILEERVLDLPMREADVAIRMKEPSQ-ADLVRRRLMNVKMRLYATQKYLDKHGTPTS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGI 241
           I ELD H L+T G    +  E   W     +PI E    S L +N+Y  ++Q  +  +GI
Sbjct: 180 IDELDVHRLVTQGLEARQVNESIAWF----KPILEQNHGSNLTLNNYFGVLQAVLHDTGI 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +LPDY+  + P LVR++ +  +    V+  +PE L+++ +++AFR+F+ 
Sbjct: 236 GVLPDYVSDEVPELVRVLPEDQSKEIPVFLAFPEELRHSKRVQAFRDFVL 285


>gi|119386679|ref|YP_917734.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377274|gb|ABL72038.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 313

 Score =  218 bits (556), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 113/289 (39%), Positives = 169/289 (58%), Gaps = 4/289 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +G  LF+RHARGL LTEQ
Sbjct: 8   MDWDKLRIFHAVADAGSLTHAGDVLHLSQSAVSRQIRALEDSLGTTLFHRHARGLILTEQ 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   TS +  KL+TT   +++S     G+L++ TT   G   L   L +    YPD+
Sbjct: 68  GELLFEATSSMVRKLDTTAARIRDSEESVFGELKVTTTTGFGTMWLVPRLAKLYDRYPDL 127

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q   LI+R+L+ I M  YA P YL     P +
Sbjct: 128 KIDLMLEERVLDLPMREADVAIRMKEPNQ-QDLIRRRLLNIRMRLYATPEYLAKAGMPQT 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H LI      P+          +   +G    S L VN+Y  ++Q  +   GI 
Sbjct: 187 LEDLGPHRLICQNPQTPQVSSGAVLSQML---LGRNISSTLMVNNYFGVLQGVLNHVGIG 243

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +LPDY+  D P+L R++ D+ +    V+  +PE L+ + ++ AFR+F+ 
Sbjct: 244 VLPDYLSADFPSLTRVLPDIQSGEVPVFLAFPEELRASRRVAAFRDFVL 292


>gi|294676107|ref|YP_003576722.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294474927|gb|ADE84315.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB
           1003]
          Length = 302

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/288 (38%), Positives = 170/288 (59%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +G  LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDALHLSQSAVSRQIRALEESLGTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   TS +  KL+     +++S  +  G+L++ TT+  G   L   L +    YPD+
Sbjct: 61  GELLFDATSTMAKKLDAAAARIRDSEEEVFGELKVTTTVGFGTMWLAPRLVKLYDRYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L+ I M  YA P Y+     P  
Sbjct: 121 KIDLLLEERVLDLPMREADVAIRMKEPAQ-ADLIRKRLINIRMRLYATPEYIARAGRPER 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+++ KH LI      P+         +V    G P  S L VN+Y  ++Q  +   G+ 
Sbjct: 180 IEDMAKHRLICQNPATPQVQAGAQLTQSV-MAHGVP--STLMVNNYFGVLQGVLNHIGVG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+  D P L R++  V +    V+  YPE L+++ ++ AFR+F+
Sbjct: 237 VLPDYLTADFPYLERVLPAVESVEVPVFLAYPEELRSSRRVNAFRDFV 284


>gi|85703356|ref|ZP_01034460.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
 gi|85672284|gb|EAQ27141.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
          Length = 301

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/288 (38%), Positives = 173/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA EQLHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGEQLHLSQSAVSRQIRALEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATRAMMKRLDAATARIRDSEEEVFGDLRVTTTTGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L+++HM  YA   YL+   EP S
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVHMCLYATQSYLEVHGEPTS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +++ H LI      P+  +       V+  +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 LDDMNAHRLICQN---PRSAQVGAGAMLVNELMTNDISSLLTVNNYFGVLQGVLHNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P LVR++ +V +    V+  YPE L+++ ++ AFR+F+
Sbjct: 237 VLPDYLTRDFPQLVRVLPEVQSVEVPVFLAYPEELRHSKRIAAFRDFV 284


>gi|83859432|ref|ZP_00952953.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852879|gb|EAP90732.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 297

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/297 (37%), Positives = 174/297 (58%), Gaps = 2/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+ F+  A  GS T AAE L LSQS++SRQIS LE E+G+KLF+RH RGL LTE 
Sbjct: 1   MDWDKLKTFHAAAEVGSLTGAAESLALSQSAVSRQISALEGELGVKLFHRHTRGLLLTEP 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   + +V  K+   +  + +   +PSG LR+     +G   L   L  F  L+P I
Sbjct: 61  GRVLFEASKDVAGKIALAEANVLDCRDEPSGLLRVTAPTAMGATWLAPRLARFNALFPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+L + ++DIS   AD A+R     Q + LIQRKL+ +  H YA+  YL+    P S
Sbjct: 121 RVRLLLVDHELDISNLEADVALRPWAATQ-NDLIQRKLMVVDQHLYASDAYLERKGAPDS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGI 241
            ++LD+H+ + +G      + + NW   + R  G+ PR +  + ++   +M+    G G+
Sbjct: 180 FEDLDRHDFVGYGPRNLAPIPNLNWHLDLGREPGQKPREALAEASTIHGMMRLAEAGLGL 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             LPDY+ ++N  L R+ +++  P F VY  +PE L+ + ++KAFR+FI  + + W+
Sbjct: 240 VGLPDYVARENDRLKRLFDEIEGPPFEVYLIFPEELRASRRVKAFRDFIMEEVKLWR 296


>gi|149204814|ref|ZP_01881777.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
 gi|149141783|gb|EDM29836.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
          Length = 301

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 173/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA EQLHLSQS++SRQ+  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGEQLHLSQSAVSRQVRALEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATRAMMKRLDAATARIRDSEEEVFGDLRVTTTTGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L+++HM  YA   YL    EP S
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVHMCLYATQSYLDAHGEPSS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++++  H LI      P+  +       V+  +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 LEDMSAHRLICQN---PRSAQVGAGAMLVNELMTNDISSLLTVNNYFGVLQGVLNDLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+++D P LVR++ +V +    V+  YPE L+++ ++ AFR+F+
Sbjct: 237 VLPDYLIRDFPQLVRVLPEVQSVEVPVFLAYPEELRHSKRIAAFRDFV 284


>gi|83951820|ref|ZP_00960552.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
 gi|83836826|gb|EAP76123.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
          Length = 298

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 171/288 (59%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDLLHLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G+LR+ TT+  G   L   L +    YPD+
Sbjct: 61  GELLFDATRAMMKRLDAATARIRDSEEEVFGELRVTTTVGFGTLWLAPRLPKLFERYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L+L+   +D+ M  AD AIR+++P Q + LI+++L+++HM  YA   Y++   EP  
Sbjct: 121 NIDLMLEESVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVHMRLYATKAYIEKFGEPKE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L+ H LI      P   +       V + + E   S L VN+Y  ++Q  +   G+ 
Sbjct: 180 MSDLEDHRLICQN---PSAAQVGAGATLVAQLMAEGVPSKLSVNNYFGVLQGVLHNVGLG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+  D P LVR++ +V +    V+  YPE L+++ ++ AFR+F+
Sbjct: 237 VLPDYLANDFPELVRVIPEVESSEVPVFLAYPEELRHSQRIAAFRDFV 284


>gi|254293470|ref|YP_003059493.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254042001|gb|ACT58796.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 302

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 171/292 (58%), Gaps = 8/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DWDKL+ F+  A +GS T A E+L +SQS++SRQI+ LE  +   LF RHARGL LTE
Sbjct: 4   SMDWDKLKSFHAAAETGSLTAAGERLGISQSAVSRQIASLEEALQNSLFQRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  LHR T+E+     T +  L ++   P G+L +   +  G   L   + +F  +YP 
Sbjct: 64  AGRILHRATAEMASSARTAESALNDTGDTPQGQLHVTAPVAFGSFWLAPRIHKFADMYPR 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L LD+++ D+    A+CAIRL      + LIQRKLVT+    YA+  YL N   P 
Sbjct: 124 MRIKLSLDDREFDLLTLEAECAIRL-WAANKADLIQRKLVTVRTSLYASEEYLANNGTPE 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV---DRPIGEPRISCLQVNSYLSIMQYCVLG 238
             ++LD+H +I+FG+   + M+  NW   V   DRP  EP    LQ+N+   +M+    G
Sbjct: 183 RAEDLDRHRIISFGEDAEQ-MKAMNWAQRVGRDDRPEREP---ALQINNVNGMMRAVRSG 238

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA LP+Y+V     L +++ ++  P+F +YF YP  LK + ++  FR+FI
Sbjct: 239 LGIADLPEYMVSKEFGLKKVLPELTGPTFDLYFIYPADLKRSRRISIFRDFI 290


>gi|58038618|ref|YP_190582.1| LysR family transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58001032|gb|AAW59926.1| Transcriptional regulator, LysR family [Gluconobacter oxydans 621H]
          Length = 316

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 124/292 (42%), Positives = 174/292 (59%), Gaps = 6/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GSFTHA ++L LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 18  MDWDKLRIFHAVAEAGSFTHAGDRLGLSQSAVSRQISALEDVLRVPLFHRHARGLILTEQ 77

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   EV+ KL  TQ  L ES  + +GK++I TT   G + L   L  FL L+PDI
Sbjct: 78  GDVLNRTVREVFSKLALTQAFLSESKERAAGKIKITTTTGFGLSWLSPRLNRFLELHPDI 137

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L++ D+D+ M  AD AIRL  P Q   L+QR L    M  YA+  YL+    P S
Sbjct: 138 EVTLLLEDADLDLGMREADVAIRLHPPTQ-PDLVQRHLANFPMPIYASAEYLERNGTPHS 196

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGS 239
           +++L  H +I+F G  +P  + + NWL  + R  G  R     L +N+  ++      G+
Sbjct: 197 LEDLANHQIISFAGWHLP--LPNVNWLLDLLRQEGVARQGSRRLAINNISAVANAIAAGT 254

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GI  LP Y     P LVRI+ +   P    YF YPE L+ + ++  FR+F+ 
Sbjct: 255 GIGSLPLYAATGYPELVRILPNQQVPLVEAYFVYPEELRTSKRIAVFRDFLL 306


>gi|84503072|ref|ZP_01001168.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84388616|gb|EAQ01488.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 307

 Score =  214 bits (546), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 172/291 (59%), Gaps = 10/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDALHLSQSAVSRQIRGLEESLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+T    +++S  +  G+LR+ TT   G   L   L +    +PD+
Sbjct: 61  GELLFDATRAMAKRLDTATARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEKFPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L+++ M  YA P YL     P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSLRMRMYALPDYLDRAGRPSR 179

Query: 183 IQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           I+E+ +H LI   T    +    +    L + D        S L VN+Y   +Q  + G 
Sbjct: 180 IEEISRHRLICQNTSAAQVAAGAQLVQELMSYDVS------SLLTVNNYFGALQAVLNGL 233

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +LPDY+V+D P L R++  V +    V+  +PE L+++ ++ AFR+F+
Sbjct: 234 GIGVLPDYLVEDFPTLERVLPGVESQEVPVFLAFPEELRHSKRIAAFRDFV 284


>gi|89054666|ref|YP_510117.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864215|gb|ABD55092.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 304

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 114/291 (39%), Positives = 173/291 (59%), Gaps = 10/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVASAGSLTHAGDTLHLSQSAVSRQIRALEEGLDTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G+LR+ TTI  G   L   L      YPD+
Sbjct: 61  GELLFDATRHMTKRLDAASARIRDSEEEVFGELRVTTTIGFGSLWLAPRLPALYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+R+L+TI+M  YA P Y++    P S
Sbjct: 121 KIDLMLEERLLDLPMREADVAIRMKEPSQ-ADLIRRRLMTINMRLYATPSYIEKHGMPDS 179

Query: 183 IQELDKHNLITFGDLIPKCMED---FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           I  L  H LI+      +          L + D  +G    S L VN+Y  ++Q  +   
Sbjct: 180 IHALGNHRLISQNAAAAQVSAGAILVRELLSYD--VG----STLAVNNYFGVLQAVIHDL 233

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +LPDY+++D P+LVR++ +V +    V+  YPE L+ + +++ FR+F+
Sbjct: 234 GIGVLPDYLIQDFPDLVRVLPEVESAEVPVFLAYPEELRQSRRIEVFRDFV 284


>gi|149914758|ref|ZP_01903288.1| phosphoribosylformylglycinamidine synthase subunit II [Roseobacter
           sp. AzwK-3b]
 gi|149811551|gb|EDM71386.1| phosphoribosylformylglycinamidine synthase subunit II [Roseobacter
           sp. AzwK-3b]
          Length = 301

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 172/288 (59%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQ+  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDHLHLSQSAVSRQVRALEESLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G+LR+ TTI  G   L   L +    YPD+
Sbjct: 61  GELLFDATRAMLKRLDAATARIRDSEEEVFGELRVTTTIGFGTLWLAPRLPQLYAKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L+++HM  +A+  YL++   P S
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVHMCLFASTSYLESRGTPAS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H LI      P+  +       V+  +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 PDDLKHHRLICQN---PRSAQVGAGATLVNELMTHDVPSLLTVNNYFGVLQGVLHNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+  D P+LVR++ DV +    V+  YPE L+++ ++ AFR F+
Sbjct: 237 VLPDYLTHDFPDLVRVLPDVHSVEVPVFLAYPEELRHSKRIAAFREFV 284


>gi|163746586|ref|ZP_02153944.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380471|gb|EDQ04882.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 303

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/291 (37%), Positives = 177/291 (60%), Gaps = 10/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE ++   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEEQLNTNLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   TS +  +L+     +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATSAMAKRLDAAAARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEQYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q + L++++L+T+ M  YA P YL+    P  
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKRLMTVRMGLYATPEYLEKHGTPKR 179

Query: 183 IQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           ++++  H LI   T  D +   ++    L   D        S L VN+Y  ++Q  V   
Sbjct: 180 MEDMADHRLICQNTDSDQVGAGLQLVKELMMYDLR------SLLTVNNYFGVLQGVVHHL 233

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ +LP+Y+++D P++V++M D+ +    VY  YPE L+ + ++ AF++F+
Sbjct: 234 GLGVLPNYLIQDFPHIVQVMPDIESAEVPVYLAYPEELRQSKRVAAFKDFV 284


>gi|163732006|ref|ZP_02139452.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
 gi|161394304|gb|EDQ18627.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
          Length = 301

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 112/293 (38%), Positives = 176/293 (60%), Gaps = 14/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+ +  +L+T    +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATAAMTRRLDTASARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q + LI++KL+ I M  YA P YL +   P +
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKKLMMIRMCLYATPDYLADYAAPQT 179

Query: 183 IQELDKHNLITFGDLIPKCME-DFNWLAT----VDRPIGEPRISCLQVNSYLSIMQYCVL 237
           I+E+  H LI        C   D + +      V   + +   S L VN+Y  ++Q  + 
Sbjct: 180 IEEIKDHRLI--------CQNIDSDQVGAGRSLVQHLMTQNIRSMLTVNNYYGVLQGVLQ 231

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GI +LPDY+ +D P+LVR++ D+ +    V+  YPE L+ + ++ AF++F+
Sbjct: 232 NLGIGVLPDYVTEDFPDLVRVLPDLSSADVPVFLAYPEELRQSQRVSAFKDFV 284


>gi|255263589|ref|ZP_05342931.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
 gi|255105924|gb|EET48598.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
          Length = 303

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 169/288 (58%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA E LHLSQS++SRQ+  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGETLHLSQSAVSRQVRALEESLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+ T   +++S  +  G+LR+ TTI  G   L   L      YPD+
Sbjct: 61  GELLFDATRSMNKRLDATAARIRDSEEEVFGELRVTTTIGFGSLWLAPRLSTLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L+++ M  YA+  YL     P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVRMQLYASREYLVQNPAPAD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +H LI      P+  +       V   +     + L VN+Y  ++Q      GI 
Sbjct: 180 LERLGEHRLICQN---PRSAQVSASSTLVQELLTHDVPNLLTVNNYYGVLQAVRSNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY  +D P+LVR++ DV +    V+  YPE L+ + +++AFR+F+
Sbjct: 237 VLPDYTTEDFPDLVRVLPDVESSEVPVFLAYPEELRQSKRIQAFRDFV 284


>gi|126735636|ref|ZP_01751381.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           CCS2]
 gi|126714823|gb|EBA11689.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           CCS2]
          Length = 301

 Score =  212 bits (539), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 109/291 (37%), Positives = 170/291 (58%), Gaps = 10/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LE     +++S  +  G+LR+ TT   G   L   L +   LYPD+
Sbjct: 61  GELLFDATKSMNKRLEAASARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYELYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L+++ M  YA   YL+    P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVRMRLYATQSYLEENGTPAE 179

Query: 183 IQELDKHNLI--TFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + ++  H LI  +   + +         L T D P      +   VN+Y  ++Q  +   
Sbjct: 180 LSDMSNHRLIGQSLNSIQVAAGATLLQHLMTADIP------NTFTVNNYFGVLQGVLNNI 233

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +LPDY+ +D P+LVR++ D+ +    V+  YPE L+ + ++ AFR+F+
Sbjct: 234 GIGVLPDYVTEDFPDLVRVLPDLESGEVPVFLAYPEELRQSKRISAFRDFV 284


>gi|310816546|ref|YP_003964510.1| transcriptional regulator, LysR family protein [Ketogulonicigenium
           vulgare Y25]
 gi|308755281|gb|ADO43210.1| transcriptional regulator, LysR family protein [Ketogulonicigenium
           vulgare Y25]
          Length = 328

 Score =  212 bits (539), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 171/292 (58%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTE
Sbjct: 21  AMDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEEALDTTLFHRHARGLILTE 80

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L   T  +  +LE     +++S     G L++ TT   G   L   L +    YPD
Sbjct: 81  QGELLFEATRSMNKRLEAAAARIRDSEDGVFGTLKVTTTTGFGTMWLAPRLGKLYDQYPD 140

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I LIL+ + +D+ M  AD AIRL++P Q + +I+++L+ + M  YA P YL+N     
Sbjct: 141 LKIDLILEERILDLPMREADVAIRLKEPSQ-ADVIRKRLMAVRMRLYATPEYLQNSPPIN 199

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            ++++ +H LI+     P+ +   N    L T D        S L VN+Y  ++Q  + G
Sbjct: 200 RLEDIAQHRLISQSLNSPQPVAAINLSQRLMTFD------MASALTVNTYYGVLQGVLAG 253

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI +LPDY+ +D+PNL R++  + +    V+  Y E L+ + ++ AFR+FI
Sbjct: 254 IGIGILPDYVTEDSPNLCRVLPYLESSEIPVFIAYAEELRQSRRIAAFRDFI 305


>gi|260427825|ref|ZP_05781804.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260422317|gb|EEX15568.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 305

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 174/289 (60%), Gaps = 4/289 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTE
Sbjct: 4   GMDWDKLRIFHAVADAGSLTHAGDALHLSQSAVSRQIRSLEESLNTTLFHRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L   T+ +  +++     +++S  +  G+L++ TT   G   L   L +    +PD
Sbjct: 64  QGELLFDATAAMVKRIDAATARIRDSEEEVFGELKVTTTHGFGVLWLAPRLTKLYEKFPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L+L+ + +D+ M  AD AIR+++P Q + LI+++L++I M  YA+P YL     P 
Sbjct: 124 LKIDLMLEERVLDLPMREADIAIRMKEPSQ-ADLIRKRLMSIRMRMYASPDYLAEHGTPG 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++EL+ H LI      P   +       V   +     + L VN+Y  ++Q  V   GI
Sbjct: 183 ALEELENHRLICQN---PASAQVAAGKLLVQELLTYGPQTALTVNNYFGVLQAVVANLGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPDYI++D P+++R++ +V +    V+  YPE L+++ ++ AFR+F+
Sbjct: 240 GVLPDYIIEDFPSVIRVLPEVESNEVPVFLAYPEELRHSKRVAAFRDFV 288


>gi|126726356|ref|ZP_01742197.1| Transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126704219|gb|EBA03311.1| Transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 300

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/296 (37%), Positives = 173/296 (58%), Gaps = 4/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GS THA + LHLSQS++SRQ+  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVADAGSLTHAGDTLHLSQSAVSRQVRALEESLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+ +  +L++    +++S  +  G+LR+ TTI  G   L   L      YPD+
Sbjct: 61  GELLFDATTAMNKRLDSASARIRDSEEEVFGELRVTTTIGFGSLWLAPRLSRLYDQYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q + L++++LV IHM  +A   YL     P  
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKRLVNIHMRLFATQEYLDKNGVPEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H LI      P   +       V   I E  +  L VN+Y  ++Q  +   G+ 
Sbjct: 180 MEDLFSHRLICQN---PNSTQVQAGATLVQSLIAENIVPFLTVNNYFGVLQSVLNHLGVG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LP Y+    P+LVR++ DV +    V+  YPE L+++ +++AFR+F+  + RD +
Sbjct: 237 VLPGYVEASFPSLVRVLPDVESKEVPVFLAYPEELRHSKRVQAFRDFVQDEIRDER 292


>gi|114766195|ref|ZP_01445195.1| Transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114541566|gb|EAU44609.1| Transcriptional regulator, LysR family protein [Roseovarius sp.
           HTCC2601]
          Length = 301

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/288 (37%), Positives = 174/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDALHLSQSAVSRQIRSLEESLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+ +  +++     +++S  +  G+L++ TT   G   L   L +    +PD+
Sbjct: 61  GELLFDATASMVKRIDAATARIRDSEEEVFGELKVTTTHGFGVLWLAPRLTKLYEKFPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L++I M  YA+P YL +   P S
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSIRMRMYASPEYLADRGVPGS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H LI      P   +       V   +     + L VN+Y  ++Q  V   GI 
Sbjct: 180 LDELSQHRLICQN---PASSQVAAGKLLVQELLTYDIQTALTVNNYFGVLQAVVANLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDYI++D P++VR++ ++ +    V+  YPE L+++ ++ AFR+F+
Sbjct: 237 VLPDYIIEDFPSVVRVLPEIESNEVPVFLAYPEELRHSKRVAAFRDFV 284


>gi|84515576|ref|ZP_01002938.1| transcriptional regulator, LysR family [Loktanella vestfoldensis
           SKA53]
 gi|84510859|gb|EAQ07314.1| transcriptional regulator, LysR family [Loktanella vestfoldensis
           SKA53]
          Length = 301

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/297 (37%), Positives = 171/297 (57%), Gaps = 22/297 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEETLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LET    +++S  +  G LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATKSMNKRLETASARIRDSEEEVFGDLRVTTTTGFGTLWLAPRLPKLFEAYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L+++ M  YA+P YL+    P S
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVRMRLYASPTYLETNGTPES 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL---------QVNSYLSIMQ 233
           + +L  H L+        C      L ++    G   +  L          VN+Y  ++Q
Sbjct: 180 LLDLSDHRLV--------CQS----LNSIQVAAGATLVQHLLTSDIQHLFTVNNYFGVLQ 227

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +   GI +LPDY+ +D P+LVR++ D+ +    V+  YPE L+ + ++ AFR+F+
Sbjct: 228 GVLNNIGIGVLPDYVTEDFPDLVRVLPDLESGEVPVFLAYPEELRQSKRIAAFRDFV 284


>gi|254485721|ref|ZP_05098926.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214042590|gb|EEB83228.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 301

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/291 (37%), Positives = 175/291 (60%), Gaps = 10/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE ++   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEEQLNTNLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+T    +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATVAMTKRLDTASARIRDSEEEIFGELRVTTTTGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q + L+++KL+ I M  YA+P YL     P  
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKKLMMIKMCLYASPTYLAEHGTPQR 179

Query: 183 IQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           ++++ +H LI   T  D +   ++    L   D        S L VN+Y  ++Q  +   
Sbjct: 180 LEDMSEHRLICQNTDSDQVNAGLQLIQQLMMYDVR------SMLTVNNYFGVLQGVIHNL 233

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +LPDY+ +D P+LV+++ D  +    V+  YPE L+ + ++ AF++F+
Sbjct: 234 GIGVLPDYLTQDFPDLVQVLPDTESADVPVFLAYPEELRTSKRVAAFKDFV 284


>gi|110680412|ref|YP_683419.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109456528|gb|ABG32733.1| transcriptional regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 301

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/291 (37%), Positives = 175/291 (60%), Gaps = 10/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+ +  +L+T    +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATAAMTRRLDTAFARIRDSEEEVFGELRVTTTTGFGTLWLSPRLPKLYERYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q + LI++KL+ + M  YA P YL +   P +
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKKLMMVRMCLYATPDYLADHAAPRT 179

Query: 183 IQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           ++E+  H LI   T  D +         L T      +   S L VN+Y  ++Q  +   
Sbjct: 180 LEEIKDHRLICQNTDSDQVGAGRSLVQHLMT------QNIRSMLTVNNYYGVLQGVLQNL 233

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +LPDY+ +D P+LV+++ D+ +    V+  YPE L+ + ++ AF++F+
Sbjct: 234 GIGVLPDYVTEDFPDLVQVLPDLTSADVPVFLAYPEELRQSQRVSAFKDFV 284


>gi|159044312|ref|YP_001533106.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912072|gb|ABV93505.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 300

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/297 (37%), Positives = 172/297 (57%), Gaps = 22/297 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDSLHLSQSAVSRQIRALEESLNTILFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+ +  +L+     +++S  +  G+LR+ TTI  G   L   L      YPD+
Sbjct: 61  GELLFDATAAMTKRLDAASARIRDSEEEVFGQLRVTTTIGFGSLWLAPRLSRLYDRYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+L+ + +D+ M  AD AIR+++P Q + LI++KL++I M  YA+P YL+    P  
Sbjct: 121 NVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKKLMSIRMRLYASPSYLERNGRPTR 179

Query: 183 IQELDKHNLI---------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
           ++E+  H +I         + G  + +  E FN   T            L VN+Y  ++Q
Sbjct: 180 MEEISSHRIICQNADSAQVSAGHTLVR--EIFNHDVT----------HSLMVNNYFGVLQ 227

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +   GI +LPDY+V D P L +++ D  +    V+  YPE L+++ +++AFR+F+
Sbjct: 228 AVINDLGIGVLPDYLVTDFPQLEQVIPDFESSDVPVFLAYPEELRHSKRIEAFRDFV 284


>gi|254453550|ref|ZP_05066987.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198267956|gb|EDY92226.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 309

 Score =  209 bits (531), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 108/288 (37%), Positives = 169/288 (58%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS T A ++LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 7   MDWDKLRIFHAVADAGSLTAAGDKLHLSQSAVSRQIRALEESLSTILFHRHARGLILTEQ 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S+ +  G+L++ TT   G   L   L      YPD+
Sbjct: 67  GELLFDATKSMSRRLDVASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPDL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L+L+ + +D+ M  AD AIR+++P Q + L+++KL+T+ M  YA+  YL        
Sbjct: 127 NIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKKLMTVRMRLYASQAYLDKVGGFDE 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+++ +H LI      P   +       V   +   + S L VN+Y  ++Q  +   GI 
Sbjct: 186 IEDIGRHRLICQS---PSAFQVAAGATLVGHLLSYDKPSLLHVNNYFGVLQAVLSDLGIG 242

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+++D P LVR++ +V +    VYF YPE L+ + ++ AFR+F+
Sbjct: 243 VLPDYVIEDFPTLVRVLPEVESGEVPVYFAYPEELRQSKRIMAFRDFV 290


>gi|254475848|ref|ZP_05089234.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214030091|gb|EEB70926.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 304

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 173/289 (59%), Gaps = 4/289 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI  LE  +   LF+RHARGL LTE
Sbjct: 3   GMDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEESLNSTLFHRHARGLILTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L   T  +  +LE     +++S  +  G+LR+ TT   G   L   L +    YPD
Sbjct: 63  QGELLFDATKSMSKRLEAASARIRDSEEEVFGELRVTTTFGFGTLWLAPRLTKLYEQYPD 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L+L+ + +D+ M  AD AIR+++P Q + LI+++L+++ M  YA+ +Y++    P 
Sbjct: 123 LKVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVQMKLYASRNYVERNGMPE 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I+++  H LI      P+  +  +    V + +     S L VN+Y  ++Q  +   GI
Sbjct: 182 VIEDIGAHRLICQN---PRSAQVGSAAVLVQKLMTHNPSSLLTVNNYFGVLQGVIHDLGI 238

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPDY+ +D P+LV ++ D  T    VY  YPE L+++ ++ AFR+F+
Sbjct: 239 GVLPDYVTEDFPDLVPVLPDEDTSDVPVYLAYPEELRHSRRISAFRDFV 287


>gi|146276944|ref|YP_001167103.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555185|gb|ABP69798.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 297

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/289 (37%), Positives = 168/289 (58%), Gaps = 4/289 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLNVTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   TS++  +LE     +++S  +  G+LR+ TT   G   L   L      YP +
Sbjct: 61  GELLFDATSQMVKRLEAAAARIRDSEDEVFGELRVTTTTGFGTLWLAPRLVGLYRKYPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L++I M  YA+P Y+     P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSIRMRLYASPDYVAEHGMPEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++   H LI     +P   +     A V   +     S L VN+Y  ++Q  +   G+ 
Sbjct: 180 MEDFSHHRLIC---QLPGAPQVAAGAALVQEILTNDIPSTLTVNNYFGVLQAVLNNLGVG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++PDY+    P LVR+M +V +    V+  YPE L+++ ++ AFR F+ 
Sbjct: 237 VMPDYLAVAFPQLVRVMPEVESNDVPVFLAYPEELRHSKRVAAFREFVM 285


>gi|260433849|ref|ZP_05787820.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417677|gb|EEX10936.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 302

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 174/289 (60%), Gaps = 5/289 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WDKLR+F+ VA +GS THA ++L+LSQS++SRQI  LE  +G  LF+RHARGL LTEQ
Sbjct: 1   MNWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEEALGATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+ +  +LET    +++S  +  G LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFEATTAMSKRLETAAARIRDSEEEVFGVLRVTTTFGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPL 181
            I L+L+ + +D+ M  AD AIR+++P Q   L++++L+T+ M  YA   YL  +   P 
Sbjct: 121 NIDLMLEERVLDLPMREADVAIRMKEPSQ-VDLVRKRLMTVRMILYATKAYLDSHGGAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++++ KH LI      P+       ++ +     EP  S L VN+Y  ++Q  +   G+
Sbjct: 180 TLEDISKHRLICQNPAAPQVGVGARMVSHL--MAYEPS-SLLTVNNYFGVLQAVLNNLGL 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPDY+ +D P+LV ++ D+ T    VY  YPE L+++ ++ AFR+F+
Sbjct: 237 GVLPDYVTEDFPDLVPVLSDIETADVPVYLAYPEELRHSKRVAAFRDFV 285


>gi|254440317|ref|ZP_05053811.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198255763|gb|EDY80077.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 309

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/288 (37%), Positives = 168/288 (58%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 7   MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLSTILFHRHARGLILTEQ 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S+ +  G+L++ TT   G   L   L      YPD+
Sbjct: 67  GELLFDATKSMSRRLDAASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPDL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L+L+ + +D+ M  AD AIR+++P Q + LI++KL+T+ M  YA+  YL        
Sbjct: 127 NIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKKLMTVRMRLYASQTYLDKVGGFAE 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+++ +H LI      P   +       V   +   + + L VN+Y  ++Q  +   GI 
Sbjct: 186 IEDIGRHRLICQS---PNAFQVAAGATLVGHLLSYDKPNLLNVNNYFGVLQAVLSDLGIG 242

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P+LVR++ +V +    V+  YPE L+ + ++ AFR+F+
Sbjct: 243 VLPDYVTEDFPDLVRVLPEVESGEVPVFLAYPEELRQSKRIMAFRDFV 290


>gi|83942615|ref|ZP_00955076.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
 gi|83846708|gb|EAP84584.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
          Length = 301

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 173/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE ++   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEEQLNTNLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+T    +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATVAMSKRLDTAAARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q + L+++KL+ I M  YA+P YL     P  
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKKLMMIKMCMYASPAYLAANGTPQR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++++  H LI       +     N +  +   +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 LEDMSDHRLICQNTDSNQVHAGLNLIQQL---MMHDVRSMLTVNNYFGVLQAVINNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+++D P+LV+++ +  +    V+  YPE L+ + ++ AF++F+
Sbjct: 237 VLPDYLIQDFPDLVQVLPETESADVPVFLAYPEELRASKRVAAFKDFV 284


>gi|99080960|ref|YP_613114.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037240|gb|ABF63852.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 301

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 109/288 (37%), Positives = 172/288 (59%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA E L+LSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGEHLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LET    +++S     G+LR+ TT   G   L   L +    YP++
Sbjct: 61  GELLFDATKTMSKRLETASARIRDSEEGVFGELRVTTTTGFGTLWLAPRLIKLYEQYPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q + LI+++L+T+ M  YA+  Y+     P +
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMTVQMRLYASRGYIDKFGWPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+E+  H LI       +  +  +    V + +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 IEEIRDHRLICQS---LRSAQVGSAAVMVQKLMTHNPKSMLTVNNYFGVLQGVLQDLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P+LV+++ +  T    VY  YPE L+++ ++ AFR+F+
Sbjct: 237 VLPDYVTEDFPDLVQVLPNEDTNGVPVYLAYPEELRHSQRVSAFRDFV 284


>gi|77463507|ref|YP_353011.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77387925|gb|ABA79110.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
          Length = 297

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 168/289 (58%), Gaps = 4/289 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLNVTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+++  +LE     +++S  +  G+LR+ TT   G   L   L      YP +
Sbjct: 61  GELLFEATNQMVKRLEAAAARIRDSEDEVFGELRVTTTTGFGTLWLAPRLVGLYKKYPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L++I M  YA+P Y      P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSIRMRLYASPTYAAEHGMPEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++  +H LI     +P   +     A V   +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 MEDFAQHRLIC---QLPGAPQVAAGAALVQELMSNDIPSMLTVNNYFGVLQAVLNNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++PDY+    P L+R++ DV +    V+  YPE L+++ ++ AFR F+ 
Sbjct: 237 VMPDYLAVAFPQLIRVLPDVESNDVPVFLAYPEELRHSKRVAAFREFVM 285


>gi|83953856|ref|ZP_00962577.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83841801|gb|EAP80970.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 301

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 173/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE ++   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEEQLNTNLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+T    +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATVAMSKRLDTAAARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q + L+++KL+ I M  YA+P YL     P  
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKKLMMIKMCMYASPAYLAANGTPQR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++++  H LI       +     N +  +   +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 LEDMSDHRLICQNTDSNQVHAGLNLIQQL---MMHDVRSMLTVNNYFGVLQAVINNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+++D P+LV+++ +  +    V+  YPE L+ + ++ AF++F+
Sbjct: 237 VLPDYLMQDFPDLVQVLPETESADVPVFLAYPEELRASKRVAAFKDFV 284


>gi|126462363|ref|YP_001043477.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|221639368|ref|YP_002525630.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|332558387|ref|ZP_08412709.1| Transcriptional regulator, LysR family protein [Rhodobacter
           sphaeroides WS8N]
 gi|126104027|gb|ABN76705.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221160149|gb|ACM01129.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
 gi|332276099|gb|EGJ21414.1| Transcriptional regulator, LysR family protein [Rhodobacter
           sphaeroides WS8N]
          Length = 297

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 168/289 (58%), Gaps = 4/289 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLNVTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+++  +LE     +++S  +  G+LR+ TT   G   L   L      YP +
Sbjct: 61  GELLFEATNQMVKRLEAAAARIRDSEDEVFGELRVTTTTGFGTLWLAPRLVGLYKKYPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L++I M  YA+P Y      P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSIRMRLYASPTYAAEHGMPEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++  +H LI     +P   +     A V   +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 MEDFAQHRLIC---QLPGAPQVAAGAALVQELMSNDIPSMLTVNNYFGVLQAVLNNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++PDY+    P L+R++ D+ +    V+  YPE L+++ ++ AFR F+ 
Sbjct: 237 VMPDYLAVAFPQLIRVLPDIESNDVPVFLAYPEELRHSKRVAAFREFVM 285


>gi|260575248|ref|ZP_05843248.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
 gi|259022508|gb|EEW25804.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
          Length = 297

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/288 (37%), Positives = 165/288 (57%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDSLHLSQSAVSRQIRSLEESLSVTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G+LR+ TT   G   L   L      YP +
Sbjct: 61  GELLFEATKAMVKRLDAAAARIRDSEDEVFGELRVTTTTGFGTLWLAPRLTALYKKYPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L+ I M  YA+  YL +   P +
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMNIRMRLYASSEYLADHGTPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +  +H LI       +        A V   +     S L VN Y  ++Q  +   GI 
Sbjct: 180 MDDFTQHRLICQHAGTAQVAAG---AALVQELMSHDIPSTLTVNHYFGVLQAVLNHIGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D PNLVR++ D  +    V+  YPE L+++ ++ AFR F+
Sbjct: 237 VLPDYLAEDFPNLVRVLPDTESGDVPVFLAYPEELRHSKRVAAFREFV 284


>gi|254511011|ref|ZP_05123078.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221534722|gb|EEE37710.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 302

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 109/289 (37%), Positives = 173/289 (59%), Gaps = 5/289 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEESLDATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   TS +  +L+T    +++S  +  G LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATSAMSKRLDTAAARIRDSEDEVFGVLRVTTTFGFGTLWLAPRLPKLYEQYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPL 181
            I L+L+ + +D+ M  AD AIR+++P Q + L++++L+T+ M  YA  +YL  +   P 
Sbjct: 121 NIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKRLMTVRMLLYATRNYLDSHGGAPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S++++ +H LI      P   +     + V   +     S L VN+Y  ++Q  +   GI
Sbjct: 180 SLEDIARHRLIC---QTPSAPQVGAGASMVKHLMAYNPGSLLTVNNYFGVLQGVLHDLGI 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPDY+ +D P+LV ++ D+ +    VY  YPE L+++ ++ AFR+F+
Sbjct: 237 GMLPDYVTEDFPDLVPVLSDIESADVPVYLAYPEELRHSKRIAAFRDFV 285


>gi|254451563|ref|ZP_05065000.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198265969|gb|EDY90239.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 309

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 168/287 (58%), Gaps = 4/287 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKLR+F+ VA +GS T A ++LHLSQS++SRQI  LE  +   LF+RHARGL LTEQG
Sbjct: 8   DWDKLRIFHAVADAGSLTAAGDKLHLSQSAVSRQIRALEEALSTILFHRHARGLILTEQG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L   T  +  +L+     +++S+ +  G+L++ TT   G   L   L      YPD+ 
Sbjct: 68  ELLFDATKSMSRRLDAASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPDLN 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L+ + +D+ M  AD AIR+++P Q + L+++KL+T+ M  YA+  YL        I
Sbjct: 128 IDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKKLMTVRMRLYASQAYLDKVGGFDEI 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++ +H LI      P   +       V   +   + S L VN+Y  ++Q  +   GI +
Sbjct: 187 EDIGRHRLICQS---PSAFQVAAGATLVGHLLSYDKPSLLHVNNYFGVLQAVLSDLGIGV 243

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPDY+ +D P LVR++ +V + +  VY  YPE L+ + ++ AFR+F+
Sbjct: 244 LPDYLTEDFPTLVRVLPEVESGAVPVYLAYPEELRQSKRIMAFRDFV 290


>gi|254453047|ref|ZP_05066484.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198267453|gb|EDY91723.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 309

 Score =  205 bits (521), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 106/288 (36%), Positives = 168/288 (58%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS T A ++LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 7   MDWDKLRIFHAVADAGSLTAAGDKLHLSQSAVSRQIRALEESLSTILFHRHARGLILTEQ 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S+ +  G+L++ TT   G   L   L      YPD+
Sbjct: 67  GELLFDATKSMSRRLDAASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPDL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L+L+ + +D+ M  AD AIR+++P Q + L+++KL+T+ M  YA+  YL        
Sbjct: 127 NIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKKLMTVRMRLYASQAYLDKVGGFDE 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+++ +H LI      P   +       V   +   + S L VN+Y  ++Q  +   GI 
Sbjct: 186 IEDIGRHRLICQS---PSAFQVAAGATLVGHLLSYDKPSLLHVNNYFGVLQAVLSDLGIG 242

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+++D P LVR++ +V +    V+  YPE L+ + ++ AFR+F+
Sbjct: 243 VLPDYVIEDFPTLVRVLPEVESGEVPVFLAYPEELRQSKRIMAFRDFV 290


>gi|259418579|ref|ZP_05742496.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259344801|gb|EEW56655.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 301

 Score =  205 bits (521), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 109/288 (37%), Positives = 173/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDRLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LET    +++S     G+LR+ TT   G   L   L +    YP++
Sbjct: 61  GELLFDATKTMAKRLETASARIRDSEEGVFGELRVTTTTGFGTLWLAPRLIKLYEQYPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L+T+ M  YA+  Y+     P +
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMTVQMRLYASRGYIDKFGWPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+E+  H LI       +  +  +    V + +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 IEEICDHRLICQS---LRSAQVGSAAVMVQKLMTHNPKSMLTVNNYFGVLQGVLQDLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P+LV+++ +  T    VY  YPE L+++ ++ AFR+F+
Sbjct: 237 VLPDYVTEDFPDLVQVLPNEDTNGVPVYLAYPEELRHSQRVSAFRDFV 284


>gi|84684743|ref|ZP_01012643.1| transcriptional regulator, LysR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667078|gb|EAQ13548.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 301

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 171/289 (59%), Gaps = 6/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + L+LSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDALNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATRAMVQRLDAAVARIRDSKEEVFGELRVTTTTGFGSLWLAPRLAKLYEQYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIRL++P Q + LI++KL+ ++M  YA   YL     P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRLKEPSQ-ADLIRKKLMGVNMRLYATHAYLDAHGRPER 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           +++L KH +I       +        AT  + I    + S L VN+Y  ++Q  + G GI
Sbjct: 180 MEDLSKHRIICQNTNSAQVSAG----ATFTQEILTHNVDSLLTVNNYFGVLQAVLNGLGI 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPDYI++D P + R++ +  +    V+  YPE L+++ ++ AFR+F+
Sbjct: 236 GILPDYILQDFPEIERVLPEEESREIPVFLAYPEELRHSKRIAAFRDFV 284


>gi|126737905|ref|ZP_01753635.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126721298|gb|EBA18002.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 301

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/288 (36%), Positives = 169/288 (58%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LE     +++S  +  G+LR+ TT+  G   L   L +    YP++
Sbjct: 61  GELLFDATKSMSARLEAASARIRDSEEEVFGELRVTTTVGFGTLWLAPRLTKLYEQYPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q + L++++L+T+ M  YA+  YL     P +
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKRLMTVQMRLYASRKYLDEHGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ++DKH LI       +  +  +    V   +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 VDDIDKHRLICQNQ---RSAQVGSASVLVKSLLTRNPASLLTVNNYFGVLQGVLHDLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ ++ P LV ++         VY  YPE L+++ ++ AFR+F+
Sbjct: 237 ILPDYVTEEFPELVEVLHSDENSGVPVYLAYPEELRHSQRVSAFRDFV 284


>gi|56696748|ref|YP_167109.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678485|gb|AAV95151.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 311

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 166/288 (57%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 11  MDWDKLRIFHAVADAGSLTHAGDRLNLSQSAVSRQIRALEESLNATLFHRHARGLILTEQ 70

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G+LR+ TT   G   L   L      YPD+
Sbjct: 71  GELLFDATKSMAKRLDAAAARIRDSEEEVFGELRVTTTFGFGTLWLAPRLAALYQKYPDL 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q + LI+++L+T+ M  YA   YL +   P  
Sbjct: 131 KVDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMTVEMKLYATRAYLDSAGTPQD 189

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I ++  H LI          +       V   +     S L VN+Y  ++Q  +   GI 
Sbjct: 190 ISDISAHRLICQN---ISAAQVGASAVLVQHLLAYNPSSLLTVNNYFGVLQGVLHNLGIG 246

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P+L+ ++ D+ +    VY  YPE L+++ ++ AFR+F+
Sbjct: 247 VLPDYVTQDFPDLIHVLPDIKSALVPVYLAYPEELRHSQRVAAFRDFV 294


>gi|254466139|ref|ZP_05079550.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206687047|gb|EDZ47529.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 301

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/288 (36%), Positives = 169/288 (58%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LE     +++S  +  G+LR+ TT+  G   L   L +    YP++
Sbjct: 61  GELLFDATQSMSARLEAASARIRDSEEEVFGELRVTTTVGFGTLWLAPRLTKLYEQYPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + L++++L+T+ M  YA P YL+      +
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLVRKRLMTVRMGLYATPAYLEKHGNLET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             ++ +H LI       +  +  +      + + E   S L VN+Y  ++Q  +   GI 
Sbjct: 180 SADISQHRLICQNQ---RSAQVGSAAVLGKKLMAEDPASLLTVNNYFGVLQGVLHNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ ++ P LV ++ D       VY  YPE L+++ ++ AFR+F+
Sbjct: 237 ILPDYVTEEFPQLVEVLPDEDQNEVPVYLAYPEELRHSQRVGAFRDFV 284


>gi|254441903|ref|ZP_05055395.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198250680|gb|EDY74996.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 309

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/288 (36%), Positives = 165/288 (57%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS T A + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 7   MDWDKLRIFHAVADAGSLTAAGDTLHLSQSAVSRQIRALEESLSTILFHRHARGLILTEQ 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S+ +  G+L++ TT   G   L   L      YPD+
Sbjct: 67  GELLFDATKSMSRRLDAASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPDL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L+L+ + +D+ M  AD AIR+++P Q + LI++KL+T+ M  YA   YL        
Sbjct: 127 NIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKKLMTVRMRLYATQTYLDKIGGFDE 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++++ +H LI      P   +       V   +   + + L VN+Y  ++Q  +   GI 
Sbjct: 186 MEDIGRHRLICQS---PSAFQVAAGATLVGHLLSYDKPNLLYVNNYFGVLQAVLSNLGIG 242

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P LVR++ ++ +    VY  +PE L+ + ++ AFR+F+
Sbjct: 243 VLPDYVTEDFPTLVRVLPEIESGEVPVYLAFPEELRQSKRITAFRDFV 290


>gi|89071184|ref|ZP_01158375.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89043280|gb|EAR49506.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 302

 Score =  199 bits (506), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 173/289 (59%), Gaps = 6/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS T A + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 2   MDWDKLRIFHAVADAGSLTAAGDTLHLSQSAVSRQIRALEESLNTTLFHRHARGLILTEQ 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LE     +++S  +  G+L++ TTI  G   L   L +    +PD+
Sbjct: 62  GELLFDATRSMNKRLEAAAARIRDSEEEVFGELKVTTTIGFGTLWLAPRLVKLYEKFPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q + LI+++L+++HM  YA+  YL+  R P++
Sbjct: 122 KIDLMLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMSVHMRLYASADYLEG-RAPIN 179

Query: 183 -IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L +H L+      P   +     +     +     S L VN+Y  ++Q      G+
Sbjct: 180 EMDDLREHRLVCQN---PGSAQVSASASLTQSLLSHDLHSLLTVNNYFGVLQAVNNHLGV 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP+Y+V+D PNLVR++ +V +    V+  YPE L+ + ++ AFR+F+
Sbjct: 237 GVLPNYVVEDFPNLVRVLPEVESAEVPVFLAYPEELRQSKRIAAFRDFV 285


>gi|114799877|ref|YP_761650.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114740051|gb|ABI78176.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 303

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 168/289 (58%), Gaps = 3/289 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW KLR F+  A SGS T A E+L +SQS++SRQI+ LE ++G+ LF RHARGL LT+ 
Sbjct: 1   MDWGKLRSFHAAAESGSLTLAGERLGISQSAVSRQIAALEEQLGVSLFQRHARGLVLTDS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R T E+    ++    L++    P G+L +A  +  G   +   L  F+  +PD+
Sbjct: 61  GHTLYRSTMEMSSAAQSANTALRDQQETPQGELIVAAPVAFGSIWMVPRLGNFVKRHPDL 120

Query: 123 QIQLILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ L LD++ + D+    A+CA+RL  P   + LIQRKL T+  + YA+P YLK    P 
Sbjct: 121 RLDLRLDDQFEYDLLKLEAECAVRL-WPADKADLIQRKLGTLGTNLYASPEYLKAHGVPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+LD H +I +GD      E   +   V R    PR + L+VN+  ++++    G GI
Sbjct: 180 EPQDLDNHRIIAYGDESTPLFE-MAFACRVGRDDAPPRPATLKVNNVFAMLRAVDAGLGI 238

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +PDY+    P LVR++ +V  P F +YF YP  L+ + ++ AFR F+
Sbjct: 239 ADVPDYMAATLPRLVRVLPEVTGPVFDLYFIYPSDLRRSKRVAAFREFL 287


>gi|126728661|ref|ZP_01744476.1| Transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
 gi|126710591|gb|EBA09642.1| Transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
          Length = 290

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/277 (35%), Positives = 166/277 (59%), Gaps = 4/277 (1%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           +A +GS THA + LHLSQS++SRQ+  LE  +   LF+RHARGL LTEQG  L   TS +
Sbjct: 1   MADAGSLTHAGDALHLSQSAVSRQVRALEEALNTTLFHRHARGLILTEQGELLFDATSSM 60

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
             ++++    +++S  +  G+L++ TT   G   L   L +    YPD++I L+L+ + +
Sbjct: 61  VKRIDSATARIRDSEEEVFGELKVTTTHGFGALWLAPRLTKLYEKYPDLKIDLMLEERVL 120

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+ M  AD AIR+++P Q + LI+++L++I M  YA+P YL    EP  ++E+  H LI 
Sbjct: 121 DLPMREADVAIRMKEPSQ-ADLIRKRLMSIRMRMYASPDYLAEHGEPTRLEEMVTHRLIC 179

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNP 253
                P+ +     + ++   +     + L VN+Y  ++Q  +   GI +LPDYI++D P
Sbjct: 180 QKPGAPQVLAGEQLVQSL---LANDVQTTLTVNNYFGVLQATISNLGIGVLPDYIIEDFP 236

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +VR++ D+ +    V+  YPE L+ + ++ AFR+F+
Sbjct: 237 TMVRVLPDIESVEVPVFLAYPEELRQSKRVSAFRDFV 273


>gi|254460174|ref|ZP_05073590.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           HTCC2083]
 gi|206676763|gb|EDZ41250.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 283

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/271 (37%), Positives = 161/271 (59%), Gaps = 4/271 (1%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79
            THA + LHLSQS++SRQ+ GLE  +   LF+RHARGL LTEQG  L   T+ +  +L+ 
Sbjct: 1   MTHAGDTLHLSQSAVSRQVRGLEESLNTTLFHRHARGLILTEQGELLFDATTAMIKRLDA 60

Query: 80  TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139
            +  +++S  +  G+LR+ TT   G   L   L      YPD++I L+L+ K +D+ M  
Sbjct: 61  AEARIKDSEEEVFGELRVTTTTGFGSLWLAPRLPHLYDKYPDLKIDLMLEEKVLDLPMRE 120

Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIP 199
           AD AIR+++P Q + LI+++L+T+HM  YA+P Y+     P SI+++    LI      P
Sbjct: 121 ADVAIRMKEPSQ-ADLIRKRLMTVHMQLYASPDYVAQNGMPESIEDIGNRRLICQN---P 176

Query: 200 KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIM 259
           + ++    L  V   +     S L VN+Y  ++Q  + G GI +LPDY+ +D P LVRI+
Sbjct: 177 RTVQVGAGLQLVQHLLAYDVPSMLTVNNYFGVLQSVLHGLGIGVLPDYVTQDFPELVRIL 236

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D+ +    V+  YPE L+ + +++ FR+F+
Sbjct: 237 PDLSSNEVPVFLAYPEELRQSKRIQVFRDFV 267


>gi|296116408|ref|ZP_06835022.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977001|gb|EFG83765.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 271

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/265 (41%), Positives = 152/265 (57%), Gaps = 2/265 (0%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           L+LSQS++SRQIS LE  + + LF+RHARGL LTEQG  L++   EV+ KL  TQ  L E
Sbjct: 2   LNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQGETLNQTVREVFSKLAMTQSLLTE 61

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
           S  K +G+LR+ TT   G   L   L  F+   PDI I LIL++ D+D+ M  AD A+R+
Sbjct: 62  SKEKAAGRLRVTTTTGFGTCWLTPRLHRFMDTNPDISITLILEDNDLDLGMREADVAVRM 121

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
             P Q   LIQR L    +  YAA  YL     P +++EL+ H L+ FG   P  +   N
Sbjct: 122 HPPRQ-PDLIQRHLADFPLPIYAAQSYLNEHGTPTTLEELNAHKLVLFGGYHPP-VPHIN 179

Query: 207 WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPS 266
           WLA    P  E R + L+VNS  ++      G GI  +P Y     PNLV+I+ +V  P+
Sbjct: 180 WLAETGVPSDERRQARLEVNSLAAMAGAIAAGIGIGSIPLYAANQYPNLVKILPEVPLPT 239

Query: 267 FTVYFCYPEALKNTGKLKAFRNFIF 291
              YF YPE L+ + ++  FR+F+ 
Sbjct: 240 VDAYFVYPEELRTSKRVAVFRDFLL 264


>gi|86138825|ref|ZP_01057397.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85824472|gb|EAQ44675.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 307

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/284 (35%), Positives = 167/284 (58%), Gaps = 4/284 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           KLR+F+ VA +GS THA ++L+LSQS++SRQ+  LE  +   LF+RHARGL LTEQG  L
Sbjct: 11  KLRIFHAVADAGSLTHAGDKLNLSQSAVSRQVRALEESLNATLFHRHARGLILTEQGELL 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              T  +  +LE     +++S  +  G+LR+ TT   G   L   L +    YP+++I L
Sbjct: 71  FDATKSMSTRLEAASARIRDSEEEVFGELRVTTTFGFGTLWLAPRLTKLFEQYPNLKIDL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+ + +D+ M  AD AIR+++P Q + LI+++L+T+ M  YA+  YL +   P + +++
Sbjct: 131 MLEERVLDLPMREADVAIRMKEPSQ-ADLIRKRLMTVQMKLYASRKYLDHNGTPEAAEDI 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H LI       +  +  +    V R +     S L VN+Y  ++Q  +   GI +LPD
Sbjct: 190 KYHRLICQNQ---RSAQVGSASVLVQRLLTHNPGSLLTVNNYFGVLQGVLHDLGIGILPD 246

Query: 247 YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+ +D P+LV ++ +       VY  YPE L+++ ++ AFR+F+
Sbjct: 247 YVTEDFPDLVEVLPNEENSVVPVYLAYPEELRHSQRVSAFRDFV 290


>gi|88861493|ref|ZP_01136115.1| probable transcriptional regulator [Pseudoalteromonas tunicata D2]
 gi|88816508|gb|EAR26341.1| probable transcriptional regulator [Pseudoalteromonas tunicata D2]
          Length = 230

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/230 (41%), Positives = 145/230 (63%), Gaps = 1/230 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL++F+ VA + SFT A+  L+LSQS+ISRQI  LE+++ ++LF RHARGL LTE 
Sbjct: 1   MDWDKLKIFHTVAEASSFTKASTILNLSQSAISRQIQALESDLKVQLFERHARGLVLTEN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   E+  KL+  +  L     K +GKL + T +  G   L   +KEF+ L+PDI
Sbjct: 61  GEYLYKSAHEIISKLKDVESNLSGHKDKLNGKLTVTTVVSFGTTWLTPRIKEFMDLHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+LI D+K++D+S   AD AIR+R+P Q  +LIQ+K V  + H Y +  YL+    P +
Sbjct: 121 EIELIFDDKELDLSTREADVAIRMRRPKQ-LNLIQKKFVDFNYHIYGSNDYLQKNGYPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           +++LDKH  IT+G   P  + + +W+       G+ R S ++VNS   ++
Sbjct: 180 LKDLDKHKFITYGKGAPSPVYNPDWVLKHGVKDGKKRKSIMKVNSVYGLL 229


>gi|46203491|ref|ZP_00051433.2| COG0583: Transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 226

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 144/224 (64%), Gaps = 1/224 (0%)

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
           +LE T+  L E+S +PSG LR+ TT+ LG + L   + EFL LYPD++I+L+L N+++D+
Sbjct: 4   RLENTRARLVETSERPSGDLRVTTTVGLGTSWLSQRVSEFLDLYPDVRIELVLTNEELDL 63

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG 195
           +M  AD AIR+R+P Q   LIQR+L T+H HA+A+P Y+K   EP +I +LD+H L++FG
Sbjct: 64  AMREADIAIRMRRPAQPD-LIQRRLFTVHYHAFASPDYVKRFGEPKTIADLDEHRLVSFG 122

Query: 196 DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNL 255
              P  +   ++LA++ R   + R     VN+  ++ +    G G+ +LPDY V  N +L
Sbjct: 123 GNEPSYLLATHYLASIGREGDDRRPVHFTVNNIAALHKAMEAGIGVGILPDYAVDGNESL 182

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           V+++ +   P+   Y  Y E +++  +++AFR+F+  KA+ W +
Sbjct: 183 VQVLRESEMPTMESYLVYAEEMRSVARVQAFRDFLVNKAQRWTY 226


>gi|163736580|ref|ZP_02143999.1| indolepyruvate ferredoxin oxidoreductase [Phaeobacter gallaeciensis
           BS107]
 gi|163742773|ref|ZP_02150158.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384028|gb|EDQ08412.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161390450|gb|EDQ14800.1| HTH-type transcriptional regulator, LysR family [Phaeobacter
           gallaeciensis BS107]
          Length = 290

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 99/277 (35%), Positives = 163/277 (58%), Gaps = 4/277 (1%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           +A +GS THA ++L+LSQS++SRQI  LE  +   LF+RHARGL LTEQG  L   T  +
Sbjct: 1   MADAGSLTHAGDKLNLSQSAVSRQIRALEESLSSTLFHRHARGLILTEQGELLFDATKSM 60

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
             +LE     +++S  +  G+LR+ TT   G   L   L +    YPD++I L+L+ + +
Sbjct: 61  SKRLEAASARIRDSEEEVFGELRVTTTFGFGTLWLAPRLTKLYEQYPDLKIDLMLEERVL 120

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+ M  AD AIR+++P Q + LI+++L+T+ M  YA+  Y++    P   +++  H LI 
Sbjct: 121 DLPMREADVAIRMKEPSQ-ADLIRKRLMTVQMKLYASRAYVERNGTPEQAEDIVDHRLIC 179

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNP 253
                P+  +  +    V + +     S L VN+Y  ++Q  +   GI +LPDY+ +D P
Sbjct: 180 QN---PRSAQVGSAAVLVQKLMTHNPSSLLTVNNYFGVLQGVIHDLGIGVLPDYVTEDFP 236

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LV ++++  T    VY  YPE L+++ ++ AFR+F+
Sbjct: 237 DLVPVLQEEDTSDVPVYLAYPEELRHSRRISAFRDFV 273


>gi|218508997|ref|ZP_03506875.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 175

 Score =  172 bits (435), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 106/142 (74%), Gaps = 2/142 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT
Sbjct: 1   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGTKLFHRHARGLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++  PSGKLR+ TT+ LGQ  L  N++EFL LYP
Sbjct: 61  EQGELLYRTAHDVLLKLETVKMQLTETTETPSGKLRVTTTVGLGQGWLTDNIQEFLQLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADC 142
           D+QIQLIL  +      ++A C
Sbjct: 121 DVQIQLILRQR--GSGCEHAPC 140


>gi|3493654|gb|AAC33477.1| transcription activator [Azospirillum brasilense]
          Length = 278

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 83/191 (43%), Positives = 117/191 (61%), Gaps = 3/191 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           KLRVF+ VA +GSFTHA E L+LSQS++S QI+ LE  +G+ LF+R   GL LT++G  L
Sbjct: 18  KLRVFHAVAEAGSFTHAGETLNLSQSAVSGQIARLEESLGVPLFHRTQSGLILTDEGELL 77

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           HR   +V+ KL  T+  L ES     G LR+ TT+   +  L   + EFL +YPDIQ+ L
Sbjct: 78  HRTARDVFAKLSMTEAMLTESRGASEGPLRVTTTVAFARTWLTPRVNEFLSIYPDIQLTL 137

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D+ ++D++M  AD A     P Q   LIQR L+++H H YA   YLK    P    +L
Sbjct: 138 LIDDNELDLAMREADIASAWNTPRQ-PDLIQRHLMSVHFHLYAHQEYLKKRGVPKIPADL 196

Query: 187 D--KHNLITFG 195
           D  +H  ++ G
Sbjct: 197 DGLRHRRLSAG 207


>gi|197121404|ref|YP_002133355.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171253|gb|ACG72226.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 300

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 152/293 (51%), Gaps = 10/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LRVF  VAR+ SF+ AA +L + +SS SR ++ LE E+G++L +R  R ++L+  
Sbjct: 1   MDLDLLRVFAAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+   + + H LE+   EL E   +PSG LR+   +D+G   L      + L YP +
Sbjct: 61  GTGLYDRIAPLLHGLESALGELPEREEEPSGLLRVTAPVDIGIFFLAELTARYTLRYPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L ++ +D+  +  D A+R+   ++ S+L+ RK   + +  +A+P YL     P +
Sbjct: 121 SVELDLSSRLVDLVAEGFDVALRVAPGLKDSTLVARKASPVQLQLFASPLYLARRGTPRT 180

Query: 183 IQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL+ H+ +TFG    K  +E       V       RI C ++   L + +    G+GI
Sbjct: 181 EAELEAHDWVTFGTQARKLRLEGARGTVEV---TPRSRILCPEL---LFVREAMRAGAGI 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LLP ++ + +     LVR++  ++     +Y   P       K+ AFR+ + 
Sbjct: 235 GLLPSFMAEQDLAAGTLVRVLPRLVRTGGNLYVVTPATRHVPRKVSAFRDLVL 287


>gi|86157358|ref|YP_464143.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773869|gb|ABC80706.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 300

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 152/293 (51%), Gaps = 10/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LRVF  VAR+ SF+ AA +L + +SS SR ++ LE E+G++L +R  R ++L+  
Sbjct: 1   MDLDLLRVFAAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+   + +   LE+   EL E   +PSG LR+   +D+G   L      + L YP +
Sbjct: 61  GTGLYDRVAPLLQGLESALGELPEREEEPSGLLRVTAPVDIGIFFLAELTTRYTLRYPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L N+ +D+  +  D A+R+   ++ S+L+ RK   + +  +A+P YL     P +
Sbjct: 121 SVELDLSNRLVDLVAEGFDVALRVAPGLKDSTLVARKASPVQLQLFASPLYLARRGTPRA 180

Query: 183 IQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL+ H+ +TFG    K  +E       V       RI C ++   L + +    G+GI
Sbjct: 181 ETELEAHDWVTFGTQARKLRLEGPRGTVEV---TPRSRILCPEL---LFVREAMRAGAGI 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LLP ++ + +     LVR++  ++     +Y   P +     K+ AFR+ + 
Sbjct: 235 GLLPSFMAEQDLAAGTLVRVLPRLVRTGGNLYVVSPASRHVPRKVTAFRDLVL 287


>gi|220916101|ref|YP_002491405.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953955|gb|ACL64339.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 300

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 151/293 (51%), Gaps = 10/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LRVF  VAR+ SF+ AA +L + +SS SR ++ LE E+G++L +R  R ++L+  
Sbjct: 1   MDLDLLRVFTAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+   + +   LE+   EL E   +PSG LR+   +D+G   L      + L YP +
Sbjct: 61  GTGLYDRIAPLLQGLESALGELPEREEEPSGLLRVTAPVDIGIFFLAELTARYTLRYPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L ++ +D+  +  D A+R+   ++ S+L+ RK   + +  +A+P YL     P +
Sbjct: 121 SVELDLSSRLVDLVAEGFDVALRVAPGLKDSTLVARKASPVQLQLFASPLYLARRGTPRT 180

Query: 183 IQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL+ H+ +TFG    K  +E       V       RI C ++   L + +    G+GI
Sbjct: 181 EVELEAHDWVTFGTQARKLRLEGARGTVEV---TPRSRILCPEL---LFVREAMRAGAGI 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LLP ++ + +     LVR++  ++     +Y   P       K+ AFR+ + 
Sbjct: 235 GLLPSFMAEQDLAAGTLVRVLPRLVRSGGNLYVVTPATRHVPRKVSAFRDLVL 287


>gi|313201786|ref|YP_004040444.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441102|gb|ADQ85208.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 305

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 22/308 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L +F  V   GSF+ AA++LH+ +S++SR+++ LET++G +L  R  R LT+T
Sbjct: 1   MKLEANDLLLFARVVDEGSFSRAADRLHIPKSTLSRRMAALETQLGERLLLRTTRKLTVT 60

Query: 61  EQGSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           + G+ +    H+VT+EV   L  T    Q   V+PSG+LR++   D G N+LQ  L EF 
Sbjct: 61  DFGNAVLAHAHQVTAEVEATLALT----QHRQVEPSGRLRLSMPGDFGINILQALLAEFA 116

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           + YP I +++ +  + +D+  +  D AIR+      +SL  R++ T     YAAP YLK 
Sbjct: 117 MRYPAISLEMDISPRRVDLIGENFDLAIRMGDLPDDTSLAARRIATFETGLYAAPAYLKK 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQY 234
              P   + L +H+ +    L+ +  E   W    D+    G P I  +  NS   +++ 
Sbjct: 177 RGTPHEPEALMEHDAL---HLLTRRGEPMLWQLKRDQAQWQGTP-IGKVSANSPAILVRM 232

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G GIA+L +   +       LVRI+ED   PS T +  +P       +L   R  +F
Sbjct: 233 AISGLGIAMLGEPFAEPYVKAGELVRILEDWHLPSVTAWAVFP-----GRRLMPARTRVF 287

Query: 292 LKARDWKF 299
           L A   +F
Sbjct: 288 LDALMARF 295


>gi|115380150|ref|ZP_01467182.1| LysR family transcriptional regulatory protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|310818714|ref|YP_003951072.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115362839|gb|EAU62042.1| LysR family transcriptional regulatory protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309391786|gb|ADO69245.1| Transcriptional regulator, LysR family protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 304

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 157/293 (53%), Gaps = 13/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +++  F  V   GSF+ AA +LH+  S++SRQ++ LE  +G++L  R  R L LTE G
Sbjct: 8   DLNQMLTFARVVARGSFSVAARELHVPPSTLSRQVASLERRIGLRLLERTTRKLRLTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +   S++   +E     ++  S+ P G LR++    LG+  L   L E++ LY D++
Sbjct: 68  ALYYERCSQIARDVEDADSTVRALSLTPRGTLRLSAPPVLGEMFLGPPLAEYVKLYRDMK 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L+++ +D+  +  D A+R+   +  SSL+ R+L        A+P Y+++   P S+
Sbjct: 128 VELSLNSRRVDLVQEGFDLAMRVAVALDDSSLMARRLGVSTRLLCASPQYVRDHGTPASL 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSG 240
            EL  H  I+ G       E + +L      I    EPR+   +VNS   +++ C+ G+G
Sbjct: 188 AELPAHPTISIGS----GHEPWRFLDAKGEVIEVKVEPRV---EVNSSALVLELCLAGAG 240

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +AL+P ++        +LV+++ ++ T    V   +P + +   K++AF + +
Sbjct: 241 LALIPSFLAATRVAEGSLVQVLPEIRTRPLEVLLLFPSSRQLAPKVRAFLDVV 293


>gi|239817889|ref|YP_002946799.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804466|gb|ACS21533.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 301

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 151/288 (52%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  VA  GSF+HAA++L +S++++S+ ++ LET  G++L  R  R ++LT+ G  
Sbjct: 5   DLIRTFREVASHGSFSHAAKKLDMSKATVSKYVAELETRFGVRLLNRSTRSVSLTDAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   ++ V   +E TQ ELQE + +P G+LRI+    +G     G L +F+  YPD+ I 
Sbjct: 65  LLERSTPVLEMVELTQAELQERARQPGGRLRISAPHGMGNGEFPGLLADFMRYYPDVSIS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L N+ +D++ +  D  IR   P+  ++LI RKL+ + M   A+P Y K   +P   ++
Sbjct: 125 LQLTNRTVDLAEEGIDVDIR-SGPVADANLIVRKLMLMEMVVCASPVYWKKHGKPGHPRD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +T   L  + +  F+       P+  P  S +       +++  + G G+  LP
Sbjct: 184 LAAHEALTHSLLGAQPVWRFD---DGGEPLDVPVKSRMDCTEGAPLIRVAMRGFGVIYLP 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +V+   D+  LV +++        +   Y +   N+  L+A  +F+
Sbjct: 241 SILVQSHIDHGELVPVLQGYARKDMWLSAAYLQRRHNSAALRALLDFL 288


>gi|253999813|ref|YP_003051876.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253986492|gb|ACT51349.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 305

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 160/308 (51%), Gaps = 22/308 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L +F  V   GSF+ AA++LH+ +S++SR+++ LET++G +L  R  R LT+T
Sbjct: 1   MKLEANDLLLFARVVDEGSFSRAADRLHIPKSTLSRRMAALETQLGERLLLRTTRKLTVT 60

Query: 61  EQGSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           + G+ +    H+VT+EV   L  T    Q   V+PSG+LR++   D G ++LQ  L EF 
Sbjct: 61  DFGNAVLAHAHQVTAEVEATLALT----QHRQVEPSGRLRLSMPGDFGIDILQALLAEFA 116

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           + YP I +++ +  + +D+  +  D AIR+      +SL  R++ T     YAAP YLK 
Sbjct: 117 MRYPAISLEMDISPRRVDLIGENFDLAIRMGDLPDDTSLAARRIATFETGLYAAPAYLKK 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQY 234
              P   + L +H+ +    L+ +  E   W    ++    G P I  +  NS   +++ 
Sbjct: 177 RGTPHEPEALMEHDAL---HLLTRRGEPMLWQLKRNQAQWQGTP-IGKVSANSPAILVRM 232

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G GIA+L +   +       LVRI+ED   PS T +  +P       +L   R  +F
Sbjct: 233 AISGLGIAMLGEPFAEPYVKAGELVRILEDWHLPSVTAWAVFP-----GRRLMPARTRVF 287

Query: 292 LKARDWKF 299
           L A   +F
Sbjct: 288 LDALMARF 295


>gi|304310080|ref|YP_003809678.1| Transcriptional regulator, LysR family [gamma proteobacterium HdN1]
 gi|301795813|emb|CBL44012.1| Transcriptional regulator, LysR family [gamma proteobacterium HdN1]
          Length = 300

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 152/292 (52%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++++ +F  V  +GS+T AA++L L +S++SR+I+ LE  +G++L +R  R +  TE 
Sbjct: 2   IDYNEMAIFAKVVDAGSYTRAADKLDLPKSTVSRKITQLEERLGVRLLHRTTRAIKPTEI 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R  +++  + E  Q  + +   +PSG LRI   I  G + L   +KE+L +YP +
Sbjct: 62  GKTYYRHCAQMLAEAEEAQRSINQMQAEPSGLLRITAPISFGASFLAETIKEYLAMYPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ ++LDNK +D+  D  D A R+  P+  SSL+ R L +I +   A+P Y++    P +
Sbjct: 122 RVDIMLDNKILDLIDDEIDVAFRV-GPMSDSSLVARTLGSIRLILCASPVYVQAHGAPRT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           I +L  HN +   ++        +W L   + P+     + L  N      +  + G GI
Sbjct: 181 ISDLAGHNCVAHNNI--------SWHLVGPNGPVDVELDARLFSNDMEMTKRMLLAGYGI 232

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LLP  +  D      L++++ +   P   VY  Y    +   K+ AF +F+
Sbjct: 233 GLLPITLAYDEIQQGQLLQVLPEYHFPDRDVYLVYHSRRQLPTKVAAFIDFV 284


>gi|182679730|ref|YP_001833876.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635613|gb|ACB96387.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 316

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 146/288 (50%), Gaps = 5/288 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F  V  S SFT AAE L + +SS+S  +  LET VG +L +R  R +  T+ G+ 
Sbjct: 5   DLLRIFVRVVESASFTKAAETLGMPRSSVSTAVHDLETRVGARLLHRTTRHVAPTQDGNA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +    E T+   ++SS +P GKLRI      G+ ++   L  F  LYP+++I+
Sbjct: 65  FFARCQRLIADYEETEGLFRQSSPRPRGKLRINVPGRFGRLIIAPALPGFFALYPEVEIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  D  DCAIR+  P+  SSL+ RK+  + +   A+P YL     P +I+E
Sbjct: 125 LGVTDRTVDLVQDGVDCAIRV-GPLMDSSLVARKIGDLVLINCASPRYLAAHGTPRNIEE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + +       ++++ W+    +    P  S + VN+  +++  C+ G G+  +P
Sbjct: 184 LRRHLAVNYLSPASGRIDEWEWVEN-GKIHSLPLPSQVTVNNADAMIACCLAGLGLIQIP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y V        LV +M D   P   +   YP     + +L+ F  ++
Sbjct: 243 AYDVAVHLATGELVEVMPDHCAPPLPMTILYPHRHHVSRRLQVFIEWV 290


>gi|328470902|gb|EGF41813.1| transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 337

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 151/297 (50%), Gaps = 15/297 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+++  V   G+FT  A QL  S S+IS+ IS LE ++G++L  R  R + LTE G    
Sbjct: 28  LKLYVSVVEQGNFTAVANQLGQSPSTISKAISRLEQDLGVRLINRTTRKVQLTEAGFSYL 87

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   L++++ +L +S   PSG LR++  +  GQ+ +   + EF  LYPD+++ + 
Sbjct: 88  ETARNVITTLKSSEEQLAQSIASPSGTLRVSLPLSFGQHYIAPLIPEFCHLYPDVKLDMS 147

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  DI  +  D AIR  K +  S+LI R+L  I M  +A+P Y+K    P  ++ L 
Sbjct: 148 FSDEYTDILENGTDIAIRSGK-LNDSNLIARRLCPIDMGMFASPEYIKEFGTPDHVEVLC 206

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H  I +     G L+P  M  FN  +   RP  +     + V++  ++     LG+GIA
Sbjct: 207 QHKWILYRFKQSGRLLPLSM-SFNGQSIEIRPKHQ-----VTVDNGYAMAVLASLGAGIA 260

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +P Y+ +D      LV + E   T    VY  YP       K+K F  +IF K ++
Sbjct: 261 YMPHYLARDLVYEGKLVLVSEPQRTEDQAVYLYYPSREFVPAKVKVFIEYIFQKLKE 317


>gi|332307314|ref|YP_004435165.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174643|gb|AEE23897.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 288

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 150/289 (51%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA + SFT A++ L +S + +SRQIS LET + +KLFYR  R ++LTE+G 
Sbjct: 3   WEGINEFVYVAETESFTQASKNLAISTAQVSRQISALETRLNVKLFYRTTRKVSLTEEGR 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    V   LE  +  +     KP G +R+   +  G+  +   + +F+LLYPD+++
Sbjct: 63  LFYQHCRSVLDGLEAAERAITNLQSKPQGTIRLTAPVTYGEQQILPLVNDFMLLYPDVEV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+ ID+     D AIRL K +  SS++ +KL T      A+P YL     P S+ 
Sbjct: 123 SAYLSNQKIDLVEQGYDLAIRLGK-LSDSSMMAKKLATRTNSVCASPEYLAKYGFPHSLS 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL+KH+ +  G L      D N    + R  G      L+ NS  S++   + G GI  L
Sbjct: 182 ELNKHSCL-LGTLDYWHFRDENKERNI-RVKGR-----LRYNSGFSLVDAALKGLGIVQL 234

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+   ++  LV ++++       ++  YP     + K+++  +++
Sbjct: 235 PDYYVQEHIESGALVSLLDNYRESEEGIWAIYPRNRHLSPKIRSLVDYL 283


>gi|85703096|ref|ZP_01034200.1| regulatory protein, LysR:LysR, substrate-binding [Roseovarius sp.
           217]
 gi|85672024|gb|EAQ26881.1| regulatory protein, LysR:LysR, substrate-binding [Roseovarius sp.
           217]
          Length = 306

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 144/290 (49%), Gaps = 15/290 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  VA +GSF  AA +L LS  +++R ++ LE  +G ++F R  R +T+T+ G + 
Sbjct: 6   EIEVFIAVAEAGSFARAATRLRLSPPAVTRAVAALEDRLGARVFNRTTRSVTITDVGRRF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 V   LE+ + E    +  P G L +  ++  G+  L   + EFL LYP + + +
Sbjct: 66  LESARRVVSDLESAEREALGEAATPQGHLTVTASVTFGRAALAPLVCEFLALYPRVTVSV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +++  +  D A R+  P+  S L+ RK+ T+H    A+P YL     P++  +L
Sbjct: 126 LLLDRVVNLVEEGVDVAARI-GPLPDSGLMARKVGTVHRILVASPAYLVARGVPMTPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIA 242
             H ++ F  L+P    +  W       IG     PR    ++N   + ++  VLG GI 
Sbjct: 185 RDHAVVGFTGLMP----NREWRYVNGSKIGSVALHPR---FEINDAATAIEAAVLGHGIT 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +   Y+V D      LV +++    P   V+  YPE      K++AF +F
Sbjct: 238 IALSYMVADLIHAGRLVPVLQAYTLPPQPVHLVYPETRLVAPKIRAFLDF 287


>gi|212636087|ref|YP_002312612.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212557571|gb|ACJ30025.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 295

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 10/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  V  SGSFT AAE+  L +S+ISR+++ LE ++GIKL  R  R   LTE G
Sbjct: 3   DLNDMMVFATVVNSGSFTAAAEEFGLPKSNISRKVTRLEDKLGIKLLERSTRSQHLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +  +++  +  ++     P G L+I  +I +GQ LL  +L  F   YP++ 
Sbjct: 63  QVYFEYCQRIMDEIQGAEESVEGLMSAPRGTLKICASITVGQCLLSPHLAPFKKAYPEVH 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS- 182
           + + L N+ +D+  +  D AIR+   ++ SSLI ++L    +  +A+P YL     PL+ 
Sbjct: 123 LDIHLTNRRVDLIEEGFDAAIRV-GTLEDSSLIAKRLCKRELFLFASPDYLATSNIPLAE 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H+ +      PK              I  P I C   + +  + Q  + G+GI 
Sbjct: 182 PSDLKQHDCLFMSATNPKPQWHLKSGKESQTIIIAPTIRC---DDFTVLRQLAIDGAGIT 238

Query: 243 LLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP YI    VKD   LVR+++  I+ S  +Y  YP     T KL+ F +++
Sbjct: 239 KLPSYICEKAVKDG-KLVRVLDQWISESVDIYALYPSHKGATPKLRVFLDYL 289


>gi|153006479|ref|YP_001380804.1| LysR family transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030052|gb|ABS27820.1| transcriptional regulator, LysR family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 298

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 146/300 (48%), Gaps = 16/300 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  VAR+ SF+ AA++L + +SS SR ++ LE E+G +L +R  R ++LT  
Sbjct: 1   MDLNLLTLFEAVARTSSFSAAAKELGIPKSSASRGVARLEGELGAQLLFRTTRQVSLTAT 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+   + +   ++    EL E    PSG L++   +DLG   L   L  +   YP +
Sbjct: 61  GTALYDRVTPLLRSVKAALGELPEREEAPSGTLKLTAPVDLGVLFLAEVLTRYTARYPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L  + +D+  +  D A+R    ++ SSLI R+   +    YA+P YL     P +
Sbjct: 121 SVDLHLTGRVVDLVAEGFDVALRAASKLEDSSLIVRRAAAVVFQLYASPLYLSRRGTPRT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240
             ELD H+ I F     K         T  RP+    PRI C   +  L +      G+G
Sbjct: 181 EDELDAHDWIVFRGGPQKLR------ITGPRPVPAHPPRIVC---DDLLFVRDAVRSGAG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKAR 295
           I LLP ++ + +     LVRI+      + ++Y   P A     K+ AFR+ +   LK R
Sbjct: 232 IGLLPTFVAEPDVLAGTLVRIVPRFERSAGSMYIVTPSAKHVPRKVTAFRDLVLEMLKTR 291


>gi|294671297|ref|ZP_06736149.1| hypothetical protein NEIELOOT_03006 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307024|gb|EFE48267.1| hypothetical protein NEIELOOT_03006 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 297

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 147/297 (49%), Gaps = 19/297 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V R GSFT AA++L +S +  S+ IS LE  +G KL  R++R L LTE G++ H
Sbjct: 7   LKVFREVVRQGSFTRAADKLGISTAMASKHISHLENHIGAKLLQRNSRNLYLTEAGAEYH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R        LET        + KP G LR+   +    + +   L E+  LYP + + LI
Sbjct: 67  RECGYALETLETAAERAAGGTEKPQGLLRVTMPMWFANHHVCSWLAEYCHLYPAVSLDLI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ ID+  +  D A+R+       +LI R L  I  +      YL+    P + QE+ 
Sbjct: 127 LDNRKIDLVAEGVDLALRVSSVDLPPTLIFRPLSEIAFYLIGETEYLQRHGTPATPQEIL 186

Query: 188 KHNLI--TFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            HN +  ++ D+    + +  E FN +            S ++ ++   + +  + G G+
Sbjct: 187 THNFVQASYVDMEHIKLSRDGEHFNLVPN----------STIRADNTPMVREMVLAGGGL 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             LP + VK   D+  LVR++ +   PS T+Y  Y +    + K+++F +F+  K R
Sbjct: 237 GYLPAWTVKRDLDSGRLVRLLPEWRIPSATLYAAYADRAFLSAKIRSFIDFLVEKIR 293


>gi|148258402|ref|YP_001242987.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410575|gb|ABQ39081.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 297

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 142/290 (48%), Gaps = 13/290 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  V  SGSF  A  QL LS+S+IS+ I  LE  +G++L  R  R  + TE G   
Sbjct: 6   SLRAFVKVVESGSFAEAGRQLRLSRSAISKYIGELEASLGVQLIVRTTRHASPTEAGQLY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L+     + +S   P G LR+   +  G   L   + EF+L YP++Q+Q+
Sbjct: 66  FERAVVILAELDAADQAVSQSQAAPRGLLRVNAPMSFGTMRLGPVVAEFMLRYPELQLQI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  +D   D  D  +R+ + ++SSSL+ RK++ +     AAP YL     P S ++L
Sbjct: 126 VLSDDLLDPVQDGFDVTLRIAE-LESSSLVARKIMPVERVICAAPAYLAQHGTPASPEQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIAL 243
            +H  +T+G L    +    W  T   P G+  I     L VN+   +    + G GIAL
Sbjct: 185 RRHTSLTYGFL----LTGNQWKLT--GPDGDHWIQPAWSLCVNNAEVLRDVAIKGQGIAL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P +I  D   +  L  I+ D   P   +Y  YP     + K++ F +F+
Sbjct: 239 IPRFIAADALESGALTAILADYTAPPLALYAIYPPTRHLSVKVRLFIDFL 288


>gi|119898891|ref|YP_934104.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119671304|emb|CAL95217.1| transcriptional regulator, LysR family,putative [Azoarcus sp. BH72]
          Length = 298

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 142/280 (50%), Gaps = 6/280 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F    + GSF  AA  L LS S++++ ++ LE ++G++LF+R  R + LT +G +L++ 
Sbjct: 9   AFVETVKRGSFAAAARSLGLSASTVAKSVARLEADLGLRLFHRSTRQVVLTTEGEELYQR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S +  ++E    E   +  +PSG LR++  + LG+  +   L E    +P + ++L L 
Sbjct: 69  CSRIADEIEALHDEAAGARARPSGTLRLSAPVVLGRQRVVPALAELRRRHPQLGVELELA 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  D  D A+R+  P+  S+L  R++   H+   AAP YL     P + +EL  H
Sbjct: 129 DRQVDVLADRLDGALRV-GPLADSALAARRVGEHHIVTVAAPAYLARRGTPGTPEELAPH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + F          + +   V   +G+   + L +N   +++     G G+A +PDY+V
Sbjct: 188 DCLLFRSPSSGRTRPWAFAGGVTATLGD--AATLAINDGEALVAAACAGMGLAQVPDYMV 245

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +      LV ++ D   P   +   YP A +   +L+AF
Sbjct: 246 AEAIARGALVEVLADRRPPPLPISLVYPSARQPPPRLRAF 285


>gi|304320745|ref|YP_003854388.1| putative LysR family transcriptional regulator [Parvularcula
           bermudensis HTCC2503]
 gi|303299647|gb|ADM09246.1| putative transcriptional regulator, LysR family protein
           [Parvularcula bermudensis HTCC2503]
          Length = 295

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 148/292 (50%), Gaps = 22/292 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA +GSF  A  +L +++S++S++I  LE ++G+KLF R  R +TLTE G +    
Sbjct: 1   MFVAVAEAGSFAGAGRKLGVTKSAVSKRIGQLEAQLGVKLFTRSTRAMTLTEAGERYRAH 60

Query: 70  TS---EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   E   + E     LQ+S   P+G+L+I   +  G+  +   +  FLL +PDI+  L
Sbjct: 61  AALALEAGKQAEDAATALQDS---PAGRLQILAPMSFGRLHIAPLMAGFLLEFPDIEADL 117

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+     D A+R  + + S +LI RKL  +H    A+P YL +   P +  +L
Sbjct: 118 ALDDRHLDLVEQGFDVAVRAGQ-LHSPTLITRKLTDLHSVLCASPEYLASHAPPRAPADL 176

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLGSGI 241
           DKHN + F        +  +W  +  +P GEP +      SY      ++M   + G GI
Sbjct: 177 DKHNCLHFA----HASDAHHW--SFRKP-GEPTVRVETRGSYQTSNSEALMDAVLGGLGI 229

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP +I         L  ++ D   PS  +   YPE      K++AF +FI
Sbjct: 230 ARLPTFIAGPAIAQGQLHHLLSDFEMPSQPLSVIYPERRYLPVKVRAFTDFI 281


>gi|87122530|ref|ZP_01078409.1| Putative transcriptional regulator, LysR family protein
           [Marinomonas sp. MED121]
 gi|86162172|gb|EAQ63458.1| Putative transcriptional regulator, LysR family protein
           [Marinomonas sp. MED121]
          Length = 298

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 147/286 (51%), Gaps = 17/286 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  V R GSF+ AAE+LH+S S ISR +S LE  +   L +R  R + L+E GS
Sbjct: 4   WDGIEAFVEVVRQGSFSAAAEKLHVSASHISRLVSQLEKRLDATLLFRTTRSIRLSEAGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++  S++   +++ +  +   +  P G LRI+     G+  +   + +FL+ +P IQ+
Sbjct: 64  LYYQQCSQLLDSIDSAEEMVTSLNQSPVGHLRISCATTFGERFIAPRVNDFLINHPKIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L N+++D+  +  D AIRL   ++SSSL+ R+L     +  A+ HY+     P ++ 
Sbjct: 124 DLHLTNREVDLIDEGYDLAIRL-GTLKSSSLLARRLCDRVEYVCASAHYIARFGMPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           EL KH          KC++     W    D+   E +I    + NS  +++   + G GI
Sbjct: 183 ELSKH----------KCLQGSKDVWTFMQDKQKREVKIHGNWRSNSGPALLDATLKGLGI 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           A LPDY V     +  L+ I+     P   V+  YP+A + + KLK
Sbjct: 233 AQLPDYYVAPYIASGELIPILSQYQYPYTGVWLVYPKARQQSPKLK 278


>gi|149190046|ref|ZP_01868323.1| putative transcriptional regulator [Vibrio shilonii AK1]
 gi|148836076|gb|EDL53036.1| putative transcriptional regulator [Vibrio shilonii AK1]
          Length = 294

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 154/293 (52%), Gaps = 17/293 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  V  + SFT AA++L  S ++ISR+++ LE ++G+KLF R  R +++TE G
Sbjct: 3   NWEGINEFVAVVETQSFTGAADRLATSVANISRRVNALEEKLGVKLFVRTTRKVSVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    +   L   ++ + +    P GK+++   +  G+ +L   + EFLL++P I+
Sbjct: 63  ATYYQHCKPLVDGLALAELAITQLQSTPKGKIKMTAPVTFGEQVLAPLMHEFLLIHPQIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + LIL N+ +++  +  D A+RL + ++ SS++ RKL+  HM   A+P YL+N  EP ++
Sbjct: 123 LDLILSNQKMNLVEEGFDLAVRLGR-LEDSSMMARKLLDRHMFVCASPTYLENHGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
            EL +H+          C+         D    E  I     +Q NS  +++   + G G
Sbjct: 182 SELKRHS----------CLRGSTKYWRFDEKGSERLIHVEGRVQCNSGYALVDAALKGLG 231

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LPDY V+   +   LV ++         ++  YP+    T K++   +++
Sbjct: 232 IVQLPDYYVQPYLEAGELVEVLTPYRGDREGIWALYPQNRMLTSKVRTLIDYL 284


>gi|330445258|ref|ZP_08308910.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489449|dbj|GAA03407.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 296

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 150/291 (51%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W+ +  F  VA + SFT A+++L +S + +SRQ+S LE  +  KLFYR  R ++LTE+
Sbjct: 2   FQWEGVTEFVAVAETESFTAASKRLGISTAQVSRQVSALENRLNTKLFYRTTRKVSLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  ++   +V   LE  +  L      P G +++   +  G+  +   + +F+L YP++
Sbjct: 62  GSVYYQHCRQVLDGLEEAERALSNLRGTPQGLIKLTAPVTYGEKYIMPLVNDFMLQYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L N+ +D+     D AIRL + + SSS++ ++L T  M+  A+P YL     P S
Sbjct: 122 EVNIDLTNRQVDLVEGSFDLAIRLGR-LTSSSMMAKRLTTRTMYVCASPAYLAKFGVPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL  HN +  G+L     ++     +V R  G      L  NS   +    + G GIA
Sbjct: 181 LSELRHHNCL-IGNLDHWRFQESGKEKSV-RVTGN-----LNCNSGYGLRDAVLKGIGIA 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY +    D+  +V I+ +   P   ++  YP     + K++   +F+
Sbjct: 234 QLPDYYIDKDLDSGEIVPILTNYQEPEEGIWALYPHNRHLSPKVRMLVDFL 284


>gi|317491434|ref|ZP_07949870.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920981|gb|EFV42304.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 299

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 146/289 (50%), Gaps = 7/289 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD LR F  VAR+GS T +A +L +SQS++SR+IS LE ++   LF RHA G  LT+
Sbjct: 3   NINWDDLRYFLSVARTGSLTGSAAELQVSQSTVSRRISALEQDLNTTLFARHATGYFLTD 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  + R  S V   +    I L +      G +R+AT   L  N++  +L EF+  YP 
Sbjct: 63  QGRDVLRKVSAVEDSITALHIGLADLDANTEGTIRLATPESLAVNMIIPSLPEFISRYPK 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++I      D+S   AD AIRL +P QS +LI ++L T++   YA+  YL+  R P 
Sbjct: 123 LRLEIISGVGVADLSRYEADLAIRLVRP-QSGNLIMQRLGTMNSAIYASADYLQ--RHPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +          D     +   +WLA          I+      Y +       G G+
Sbjct: 180 PSSDPTSGRAFIIWDRAYSHLPTASWLAKQGYDANPALITSSVAEQYAAAKS----GIGL 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLP ++V  + +++ ++ +    S  ++      L+++ +++A   F+
Sbjct: 236 ALLPSFLVAHDADMIEVIPNNQVFSEDLWLTTHADLRSSVRIRAISEFL 284


>gi|294139319|ref|YP_003555297.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293325788|dbj|BAJ00519.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 295

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 150/289 (51%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  V ++GSFT AAE L L +S+ISR+++ LET +G++L  R  R + LTE G  
Sbjct: 5   NDMLVFAEVIKAGSFTKAAEVLDLPKSNISRKLTRLETHLGVRLIERTTRSIHLTEVGQI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    +  ++E+ ++ +      P G+L+I  ++ +GQ ++  NL  F+ LYPDI + 
Sbjct: 65  YLQHCQRIQEEVESAELCVDHLVESPRGQLKICVSVTMGQQIISRNLCRFIALYPDIDVT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L N+ ID+  +  D AIR+ K ++ SSLI + L  I     A+P        P    E
Sbjct: 125 LELTNRRIDLIEEGFDLAIRIGK-LEDSSLIAKYLGQIERKLCASPALFNLYALPSIPAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L     +     +PK      WL + +  +    ++  +QVN +LS+ Q C+ G GI +L
Sbjct: 184 LSLLPSLFMTSGMPK----NQWLLSREDLVESVHLAPKIQVNDFLSLSQLCISGCGITML 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y+  +     +L+ I+ +       VY  YP     T K++A  NF+
Sbjct: 240 PAYLCDEAIIEGSLLHILPEWQCEQSNVYALYPSHKSVTPKVRAMLNFL 288


>gi|186472734|ref|YP_001860076.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195066|gb|ACC73030.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 296

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 152/299 (50%), Gaps = 19/299 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F     + +FT AA +L LS+  +SR++  LE  +G++L  R+ R L +T+ G +
Sbjct: 4   DDLKIFVTTVDARNFTAAANRLQLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDLGYE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++  + +  ++E  +  +      P G LR++  +  G   L   +  FL   PD+++ 
Sbjct: 64  LYQRATRILGEVEDAEQAMTSGRSDPRGLLRVSAPMSFGMIHLSPLVAAFLRANPDVRVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D A+R+   +  S+LI +KL  I M A  +P Y K  R P +  +
Sbjct: 124 MELSDRVVDVVGEGFDMALRI-GTLADSTLIAQKLAEIRMVACCSPAYRKARRPPATPGD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241
           L +H  + +G           W   VD   G  R       L+VN+   I    + G GI
Sbjct: 183 LARHACLLYGQ-----EGRSGWEYMVD---GASRTIEVHGPLRVNNGEVIRDAAIAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           A LP++IV +   +  LV ++ D ++P  T+Y  YP+  + +  ++AF  F+   F+KA
Sbjct: 235 ARLPEFIVAEALASGKLVEVLGDFVSPPLTLYAVYPQHRQASITIRAFTQFLRDRFVKA 293


>gi|149908568|ref|ZP_01897230.1| Putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
 gi|149808402|gb|EDM68339.1| Putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
          Length = 294

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 150/294 (51%), Gaps = 13/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  +  F  VA + SFT A ++L +S + +SRQIS LE  +  KLFYR  R +++TE G
Sbjct: 3   DWSGVSEFVAVAETESFTAAGKRLGISTAQVSRQISALEERLSAKLFYRTTRKVSVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++   +V   L   +  +      P GKL+I   I  G+  +   + +F+  YP+++
Sbjct: 63  GIYYQHCRQVMDGLADAERAITNLQSTPKGKLKITAPITYGERSVAPLVNDFVTQYPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L N+ ID+  +  D AIRL + +  S++I ++L T   +  AAP YL     P ++
Sbjct: 123 VQLVLSNQQIDLIDEGFDLAIRLGQ-LGDSTMIGKRLATRKQYVCAAPEYLSAFGAPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            ELD+HN ++ G L      D+ W           R+      NS   ++   + G GI 
Sbjct: 182 SELDRHNCLS-GTL------DY-WRFQEKGKARNIRVKGNFSCNSGPVLVDAALKGMGIV 233

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LPDY V+++ N   L+ ++ +   P   V+  YP+    + K++   +++  K
Sbjct: 234 QLPDYYVQEHINQGQLIELLPNYREPDDAVWALYPQNRHLSPKVRMLVDYLAKK 287


>gi|149376176|ref|ZP_01893941.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
 gi|149359581|gb|EDM48040.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
          Length = 296

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 151/291 (51%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           + W+ +  F  VA +G+FT AA++L +S + +SRQIS LET +  +LFYR  R ++ TE 
Sbjct: 2   YHWEGVNEFVAVAETGNFTRAAKRLGISTAQVSRQISALETRLSTRLFYRTTRRVSATEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +    + P G+L++   +  G+  +   L +F++ YP++
Sbjct: 62  GEIYYQHCRQVLEALEEAERSITNMQLVPRGRLKLTAPVTYGEKSIAPLLNDFVMRYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L N+ +D+  +  D A+RL K ++ S+L+ R+L +  ++  A+P YL     P S
Sbjct: 122 EVEVNLTNQTLDLVAEGYDLAVRLGK-LEDSTLMARRLASRTLYVCASPAYLSARGTPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL  HN +  G+L      D+       +P        ++ +S  +++   + G GI 
Sbjct: 181 LSELAHHNCL-LGNL------DYWRFQEAGQPRNVRVSGNIRCDSGRALLDAALKGIGIV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY VK   D+  LV ++         ++  YP     + K++   +F 
Sbjct: 234 QLPDYYVKRALDSGALVPLLTHYQEDDDGIWAVYPHNRHLSPKVRMLLDFF 284


>gi|157960732|ref|YP_001500766.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845732|gb|ABV86231.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 302

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 149/286 (52%), Gaps = 4/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V ++GSF+ AA +   +Q++IS++++ LE+ +G KL  R +R L+LTE G+   
Sbjct: 7   MKAFVRVVQTGSFSAAAREQSSTQATISKKVAALESLLGAKLLTRSSRELSLTEVGAVYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+  Q +++     P G LR+A  +  G   +   L EFL+ YP+I++ L+
Sbjct: 67  ENCVAIIAELDEAQAQVRSQQASPKGILRVAAPVVFGCQFIAPILGEFLIRYPEIKVDLM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +K +D+  +  D AIR ++ ++ SSL+ R L    +   A+P YLK   +P   QEL 
Sbjct: 127 LSDKHVDLVAEGVDLAIRAKQ-LEDSSLVARHLFDNPLITVASPEYLKRFTQPKEPQELR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN I +  L    +  F         I  P     + ++  +I+Q  + G GIA LP +
Sbjct: 186 AHNCIVYSMLKSVNIWHFEQAKGGGDKISVPVGGNCRCDNGEAILQLALDGVGIAQLPTW 245

Query: 248 IVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V  + N   L R+M + ++        YP++     K++ F +++
Sbjct: 246 MVDKHINQGKLQRMMPNYLSHPLPFNAIYPQSRYVPLKVRCFIDYL 291


>gi|90577393|ref|ZP_01233204.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90440479|gb|EAS65659.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 299

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 154/302 (50%), Gaps = 21/302 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG- 63
           +  + +F  V   GSF+ A+ +L +++S++S++IS LET +G KL  R  R L+LTE G 
Sbjct: 4   FSTIPIFTAVVELGSFSEASRKLGITKSAVSKRISTLETHLGAKLIQRTTRKLSLTEAGE 63

Query: 64  ---SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
              S +HR  S V ++ E     LQ S   P G L+++  +  G+  +   L EFL LYP
Sbjct: 64  QYYSYIHRAKSLV-NEGEDAISSLQGS---PKGHLKVSVPMVFGELHIAPLLSEFLRLYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ L +D+K +D+  D  D  +R+   +  S+L+ RKL   H    A+P YL+    P
Sbjct: 120 DIKLNLSMDDKVVDLVKDGLDMTLRI-GALSDSNLVARKLSPCHSVLCASPGYLEKYGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
            +I +L +HN + +            W  T   P G  RI     +QVN+   + Q  + 
Sbjct: 179 TAINDLKQHNCLYYSYF----RSGIEW--TFYGPNGLERIKPEGNIQVNNSNVLKQLMLD 232

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             GI  +P ++V+   DN  L+ I+E    P   +Y  YPE      KLK F +++  K 
Sbjct: 233 DIGICQMPLFLVEHEIDNGTLMPILEQYQLPEHGIYAVYPERAFMPAKLKVFLDYLEQKL 292

Query: 295 RD 296
            D
Sbjct: 293 SD 294


>gi|260574901|ref|ZP_05842903.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
 gi|259022906|gb|EEW26200.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
          Length = 301

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 143/297 (48%), Gaps = 14/297 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G NLL   L +FLL YPDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNLLSPILGDFLLEYPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+   ++ SSL  RKL        A+P Y +    P+ I +L
Sbjct: 126 VLNNRYVELISEGFDLAIRVGD-LEDSSLRARKLTETSKRMIASPSYFQRFGRPMKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     +    W  T   P GE R    +  L VN   S++   V G GIA
Sbjct: 185 NDHKLLHYSNQANGNV----WKITA--PSGEKRQVRSVGWLTVNDGQSLLNAAVSGLGIA 238

Query: 243 LLPDYIVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP ++  +     ++ E +      +  +Y  YP       K++AF +F+  +  D
Sbjct: 239 YLPSFLCAEAMKAGQVEEAIPGLPVETLGIYAVYPPGRFTQPKVRAFIDFLARRYTD 295


>gi|260779006|ref|ZP_05887898.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605170|gb|EEX31465.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 283

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 149/282 (52%), Gaps = 13/282 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V   GSFT AAE L+  +S+ISR+I+ LE+++G++L  R  R L LTE G + ++ 
Sbjct: 2   VFATVVERGSFTQAAEALNTPKSNISRKITRLESQLGVRLLERSTRTLHLTEIGQRYYQY 61

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  + E     ++    KP G+LR+ T++ +GQ+LL  +L E+   YPD+++ L L 
Sbjct: 62  CKRIKEEYEAAGSAVESMLEKPQGRLRVCTSLGVGQSLLGDHLAEYCRHYPDVELDLSLT 121

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +D+  +  D A R+   +  S LI +KL +I++  YAAP + K+     S  +L KH
Sbjct: 122 NRRVDLIEEGYDLAFRV-GDLPDSGLIAKKLCSINLRLYAAPSFAKHRINTPS--DLLKH 178

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            L+       +   D++    V++     EP + C   + +  +M+  + G GI  LP+Y
Sbjct: 179 PLMLMS--AKERSPDWHLRCGVEKTALRFEPNVRC---DDFSMLMRMAIKGLGITELPEY 233

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + K       L+ I+ D       +Y  YP    +T K++A 
Sbjct: 234 MAKRELAEGTLINILPDWQFEPVDLYALYPSHRGSTPKVRAL 275


>gi|104783172|ref|YP_609670.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95112159|emb|CAK16886.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 300

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 142/280 (50%), Gaps = 15/280 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W+ +  F  VA SG FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TL+
Sbjct: 1   MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEERLQTRLLYRSTRRVTLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP
Sbjct: 61  EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++ L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P YL+    P
Sbjct: 121 QLRVEVELSNRTLDLLHEGMDLAIRLGR-LQDSRLVATRLAPRRMYLCASPAYLERYGRP 179

Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238
            S+ EL +HN L+   DL         W    D R I +      + NS  +++   + G
Sbjct: 180 HSLSELARHNCLVGSSDL---------WALQQDGREISQRVQGNWRCNSGQAVLDAALQG 230

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPE 275
            G+  LPDY V ++ N   LV ++E    P+  V+  YP+
Sbjct: 231 MGLCQLPDYYVLEHLNTGALVSLLEGHQPPNTAVWALYPQ 270


>gi|153006496|ref|YP_001380821.1| LysR family transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030069|gb|ABS27837.1| transcriptional regulator, LysR family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 342

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 144/293 (49%), Gaps = 7/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  VA +GSF  A  +L +S  +++R ++ LE  +G++LF R  R L LTE G + 
Sbjct: 19  EMEVFVAVADAGSFAKAGARLRISPPAVTRAVASLERRLGVRLFNRTTRSLRLTEAGLRF 78

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE  + E    S  PSG L + T++  G++ +   + EFL  +P +   L
Sbjct: 79  LESAKPLLGDLEEAEREAAGDSAAPSGHLTVTTSVTFGRSAMAPVVTEFLRNHPRVTASL 138

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +++  +  D A+R+ + +  SSL+ R++  +     A+P YL     P S  EL
Sbjct: 139 MLVDRVVNLVEEGIDVAVRIGQ-LPDSSLVARRIGEVQRVLVASPEYLAKHGAPASPAEL 197

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H++I F  L+P     F   A   R   +PR    +VN   + ++    G GI + P 
Sbjct: 198 KRHSVIAFTGLMPNREWRFVDGAESSRIAVQPR---FEVNDAFAALEAAEAGDGITISPS 254

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +IV +      L  ++     P  +V   +P++     K++AF  F   + +D
Sbjct: 255 FIVAERIAAGRLAPVLAAYTAPPVSVQLVHPQSRLVAPKVRAFVEFAGPRLKD 307


>gi|167622897|ref|YP_001673191.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352919|gb|ABZ75532.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 302

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 147/286 (51%), Gaps = 4/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V +SGSF+ AA + + +Q++IS++++ LE+++G KL  R +R  ++TE G+  +
Sbjct: 7   MRAFIRVVQSGSFSAAAREQNTTQATISKKVAALESQLGAKLLTRSSRENSMTEVGAVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+  + +++     P G LR+A  I  G   +   L  FL  YP+I++ L+
Sbjct: 67  ESCVAIIGELDEAEAQVRSQQASPKGVLRVAAPIVFGCQFIAPFLSHFLECYPEIKVDLM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +K +D+  +  D AIR ++ ++ SSLI R L    M   A+P YLK   EP   QEL 
Sbjct: 127 LSDKHVDLIAEGVDVAIRAKQ-LEDSSLIARHLFDNPMVVVASPDYLKRFGEPKEPQELR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN I +  L    +  F      D  I  P     + ++  +I+Q  + G G+  LP +
Sbjct: 186 SHNCIVYSMLKSVNIWHFEQAKESDDKISVPVSGNCRCDNGEAILQLALDGLGVVQLPIW 245

Query: 248 IVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V ++  + R   ++ + I         YP++     K + F +++
Sbjct: 246 MVDEHVKVGRLKVLLSNYIAKPLPFNAIYPQSRYVPLKARCFIDYL 291


>gi|269103262|ref|ZP_06155959.1| transcriptional regulator LysR family protein [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163160|gb|EEZ41656.1| transcriptional regulator LysR family protein [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 295

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 151/292 (51%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W+ +  F  V+ + SFT AA+++ +S + +SRQIS LE  +  KLFYR  R ++LTE+
Sbjct: 2   FLWEGVTEFVAVSETESFTAAAKKIGISTAQVSRQISALENRLNTKLFYRTTRKVSLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +R   +V   LE  +  +      P G +++   +  G+  +   + +F+L YP+I
Sbjct: 62  GSIYYRHCRQVMDGLEEAERAITSLRGVPQGLIKMTAPVTYGEKYIVPLVNDFMLQYPEI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L N+ +D+     D AIRL K + +SS++ ++L T  M+  A+P YL+    P +
Sbjct: 122 EVAMDLTNRQMDLVEGAFDLAIRLGK-LGNSSMMAKRLTTRTMYLCASPAYLEKYGMPHT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI 241
           + EL  HN +  G+       D+ W           RI+  L  NS   +    + G GI
Sbjct: 181 LSELRHHNCL-IGN------HDY-WRFQEKGKEKSIRIAGSLSCNSGYGLRDAVIKGIGI 232

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP+Y V +   N ++V I+E    P   ++  YP     + K++   +F+
Sbjct: 233 AQLPEYYVDEDLANGSIVPILEKFQEPDEGIWALYPHNRHLSPKVRLLVDFL 284


>gi|319796234|ref|YP_004157874.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598697|gb|ADU39763.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 300

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 155/301 (51%), Gaps = 21/301 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  VA  GSF+ AA++L +S++++S+ ++ LET  G++L  R  R ++LT+ G  
Sbjct: 5   DLIRTFREVAAHGSFSQAAKKLDMSKATVSKYVAELETRFGVRLLNRSTRSVSLTDAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   ++ V   +E TQ ELQ+ + +P+G+LRI+    +G       L +F+  YPD+ I 
Sbjct: 65  LLDRSTPVLEMVELTQAELQDRASQPAGRLRISAPHGMGNGEFPNLLADFMRYYPDVSIS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L N+ +D++ +  D  IR   P++ ++LI RKL  + M   A+P Y K   +P   ++
Sbjct: 125 LQLTNRTVDLAEEGIDVDIR-SGPVEDANLIVRKLRLMQMVVCASPVYWKKHGKPEHPRD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQYCVLG 238
           L  H  +T   L  + +  F+         GEP       R+ C +      +++  + G
Sbjct: 184 LAGHEALTHSLLGAQPVWRFD-------DGGEPLDVHVKSRMDCTE---GAPLIRVAMRG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+  LP  +V+   ++  LV +++D       +   Y +   N+  L+A  +F+  +  
Sbjct: 234 FGVIYLPSILVQSHIEHGELVPVLQDYTRKDMWLSAAYLQRRHNSAALRALLDFLQTRVG 293

Query: 296 D 296
           D
Sbjct: 294 D 294


>gi|260429586|ref|ZP_05783563.1| LysR substrate binding domain protein [Citreicella sp. SE45]
 gi|260420209|gb|EEX13462.1| LysR substrate binding domain protein [Citreicella sp. SE45]
          Length = 307

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 141/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 12  EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L EFL  +PDI + +
Sbjct: 72  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGEFLAAFPDITVNM 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P  I +L
Sbjct: 132 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTDTTKRMIASPAYFQKFGRPARIDDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ + +     +    W  T   P GE R       L VN   S++  C+ G GIA
Sbjct: 191 NEHKLLHYSNQSSGNV----WKVTA--PSGEKRQVRTAGWLSVNDGQSLLNACIAGLGIA 244

Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP Y+  D     LV   + D+   S  +Y  YP       K++AF +F+
Sbjct: 245 YLPSYLYADAMKQGLVEDAIPDLPVESQGIYAVYPPGRFTQPKVRAFIDFL 295


>gi|146337973|ref|YP_001203021.1| transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146190779|emb|CAL74784.1| putative transcriptional regulatory protein domain, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 297

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 144/292 (49%), Gaps = 19/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V  SGSF  A  QL LS+S+IS+ I  LE  +G++L  R  R  + TE G +  
Sbjct: 7   LRAFVKVVESGSFAEAGRQLRLSRSAISKYIGELEQSLGVQLIVRTTRHASPTETGQRYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+     + +S   P G LR+   +  G   L   + +F++ +P++Q+Q++
Sbjct: 67  ERAVAILAELDAADQAVSQSQAAPRGLLRVNAPMSFGTMRLGPVVADFMVRFPELQLQIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D   D  D  +R+ + ++SSSL+ R++  +     AAP YL     P S +EL 
Sbjct: 127 LSDDLLDPVQDGFDVTLRIAE-LESSSLVARRITPVDRVICAAPAYLARHGTPESPEELR 185

Query: 188 KHNLITFGDLIPK-----CMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +H+ +T+G L+          D N W+        +P  S L VN+   +    + G GI
Sbjct: 186 RHSSLTYGFLLTGNQWKLTGRDGNHWI--------QPAWS-LCVNNAEVLRDVAIKGQGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL+P +I  D   +  L  I+ D   P   +Y  YP     + K++ F +F+
Sbjct: 237 ALIPRFIAADALASGALTAILSDYTAPPLALYAIYPPTRHLSVKVRLFIDFL 288


>gi|220934853|ref|YP_002513752.1| putative transcriptional regulator [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996163|gb|ACL72765.1| putative transcriptional regulator [Thioalkalivibrio sp. HL-EbGR7]
          Length = 308

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 150/300 (50%), Gaps = 10/300 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  +  +GS T AA +L +++S +S ++S LE  VG +L  R +R L+LTEQG  
Sbjct: 4   EGIRTFVAIVEAGSITAAARRLGVAKSVVSHRLSELEDSVGARLIQRSSRRLSLTEQGEM 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            HR ++ +  +L+     + E   +  G LR+A  +  G   L   L  FL  +P IQ+ 
Sbjct: 64  FHRFSARMLGELDEAVSRIAEEGHELRGPLRVAAPMSFGLLHLGPALYPFLREHPGIQLD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+++ +D+  +  D AIR+ + +  S+L+ R+LV+      A+P YL     P  ++ 
Sbjct: 124 LDLNDRMVDLVGEGYDMAIRIGQ-LPDSTLVARRLVSSCSLLVASPAYLAEHGRPKHVEA 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  I + ++ P     F      D  +     + LQVN+  ++    + G G+A++P
Sbjct: 183 LSEHRGILYSNVHPNDQLRFR---RADGTVTGHFATALQVNNGDAMRDAAIAGLGLAVIP 239

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD---WKF 299
           D+IV     +  LV +  D   P   VY  +P+    T K++A    +     D   WKF
Sbjct: 240 DFIVWQALADGRLVVVELDGSLPEVGVYAVFPQNRHLTAKVRALTEHLAASFGDPPYWKF 299


>gi|237809614|ref|YP_002894054.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237501875|gb|ACQ94468.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 292

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 147/293 (50%), Gaps = 13/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  V  + SFT AA++L +S + ISR ++ LE  +G KL YR  R L LTE G 
Sbjct: 4   WDGINEFICVVETESFTAAAKRLDVSVAHISRHVNQLEDRLGAKLLYRTTRKLRLTEVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   +V ++L+     + E   KP+GKLRI   +  G+  L   + +FLL YP + +
Sbjct: 64  VYYQHARKVLNELQEADRAVMEMEGKPTGKLRITAPVYYGEYFLAPLVNDFLLQYPQLDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+ ID+  +  D AIRL   + SSSL+ RKL     +  A+P YL     P ++ 
Sbjct: 124 ELKLTNETIDLVEEGYDLAIRL-GTLDSSSLMCRKLARRTQYLCASPAYLAAKGTPHTLT 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  +  G  I       +W    +  +   RI S    NS L++    + G GI  
Sbjct: 183 DLANHRCL--GGSID------HWRFLENGKLRNWRIGSAWSCNSGLALKDAALKGLGIVQ 234

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LPDY V++      LV ++E+   P   ++  YP     + K+K   +F+  K
Sbjct: 235 LPDYYVQEELKQGLLVSLLEEYRLPDDGIWVVYPHNRHLSPKVKLLVDFLVKK 287


>gi|71279467|ref|YP_270278.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71145207|gb|AAZ25680.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 302

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 151/298 (50%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  +GSFT AA++L + ++++SR++S LE  + + L  R  R   LT
Sbjct: 1   MEHDLNDMMVFLAVVETGSFTLAADRLGMPKANVSRKVSRLEKNLAVTLLERSTRSQHLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       ++ +L+     + E     +G+L+I  ++  GQ +L+  L +F+  YP
Sbjct: 61  EAGRRYLAHCKRIHEELDLATASVCELFHSYTGELKIGASVASGQQVLRPALGKFMRQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++QL L N+ +D   +  D  IR+ + +  S LI +KL  I+   +A+P YL     P
Sbjct: 121 DLKVQLNLVNRRVDFIEEGFDVVIRIGQ-LNDSMLIAKKLGAINRKIFASPSYLAKQGNP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPI----GEPRISCLQVNSYLSIMQYC 235
             +++L +H L+    L     +D    L + D        +PR   L V+ +  + Q  
Sbjct: 180 DKVEQLTEHQLLIMNPLNISGNKDLKLPLTSTDHETFTLDCQPR---LLVDDFSMLKQAI 236

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V G GI +LPDY+ +    +  LV I+ D       +Y  YP+      K+KAF +F+
Sbjct: 237 VDGLGIGVLPDYMCRQEVASGQLVNILPDWGMAKVDIYALYPKHRAKIPKVKAFIDFV 294


>gi|89072266|ref|ZP_01158845.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89051798|gb|EAR57250.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 299

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 153/302 (50%), Gaps = 21/302 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG- 63
           +  + +F  V   GSF+ A+ +L +++S++S++IS LET +G KL  R  R L+LTE G 
Sbjct: 4   FSTIPIFTAVVELGSFSEASRKLGITKSAVSKRISALETHLGAKLIQRTTRKLSLTEAGE 63

Query: 64  ---SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
              S +HR  S V ++ E     LQ S   P G L+++  +  G+  +   L EFL LYP
Sbjct: 64  QYYSYIHRAKSLV-NEGEDAISSLQGS---PKGHLKVSVPMVFGELHIAPLLSEFLRLYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ L +D+K +D+  D  D  +R+   +  S+L+ RKL   H    A+P YL+    P
Sbjct: 120 DIKLNLSMDDKVVDLVKDGLDMTLRI-GALSDSNLVARKLSPCHSVLCASPEYLEKYGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
            ++ +L +HN + +            W  T   P G  RI     +QVN+   + Q  + 
Sbjct: 179 TALNDLKQHNCLYYSYF----RSGIEW--TFYGPSGLERIRPEGNIQVNNSNVLKQLMLD 232

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             GI  +P ++V+    N  L+ I+E    P   +Y  YPE      KLK F +++  K 
Sbjct: 233 DVGICQMPLFLVEHEIANGTLIPILEQYRLPEHGIYAVYPERAFMPAKLKVFLDYLEQKL 292

Query: 295 RD 296
            D
Sbjct: 293 SD 294


>gi|218463557|ref|ZP_03503648.1| transcriptional regulator, LysR family protein [Rhizobium etli Kim
           5]
          Length = 304

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 140/280 (50%), Gaps = 14/280 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E+G++L +R  R L  T+ 
Sbjct: 2   LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLHRTTRSLHPTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +S+    +E   + L E+  +P+G +RI+  +  G + LQ  + + L  YP  
Sbjct: 62  GRLYYEQSSQALRTIEGANLRLAEARTEPAGTIRISAPVGFGGHFLQDAIFDLLATYPKS 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++  +  D A R    ++ S+LI RKL + H    A+P YL  C  P  
Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLARCGAPDR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
             +L +H+ +  G           WL  ++ P G+  ++       N   ++M   + G 
Sbjct: 181 PADLVRHDCVIAGQ-----STHAQWL--LESPHGQETVTVSGRFAANEMQAVMATAIAGY 233

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           GIA LP  +      +  L R+++   TP+  +Y  YP +
Sbjct: 234 GIARLPHGVANGFIRDGRLCRVLDGYTTPAGGLYVVYPSS 273


>gi|310824992|ref|YP_003957350.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398064|gb|ADO75523.1| Transcriptional regulator, LysR domain protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 313

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 149/292 (51%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L VF  V ++GSFT AA  L + +S++SR++S LE  VG +L  R  R L LTE 
Sbjct: 21  MDLNELLVFAKVVQAGSFTLAARGLRMPKSTVSRKVSELEERVGAQLLQRTTRKLRLTEV 80

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  + E  ++ +      P G LR+  T  L  N +   L  FL  YP++
Sbjct: 81  GQAYYEHCARIVAEAEQAELAVTRMQSAPHGLLRV--TAPLAFNFMGSILAAFLTRYPEV 138

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI+++  ++ +D+  +  D A+R  +   SSSLI R+L +I     A+P Y++    P S
Sbjct: 139 QIEMVCTDRTVDLVEEGFDLAVRAGRLPDSSSLIARRLGSIERGVMASPRYIQERGAPKS 198

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +EL  H+ + FG      +    W L + +R       + L VN    +    + G GI
Sbjct: 199 PKELAAHDCLLFGVGTGGNV----WSLVSGNRSAEVSIRARLTVNEPDMLRAVTLAGFGI 254

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLP+ +  ++     + RI+ +  +P  +V+  YP    ++ K+ AF +F+
Sbjct: 255 ALLPNSLYAEDIATGRMQRILPEWSSPGASVHALYPVTRHHSPKVMAFVDFL 306


>gi|117922232|ref|YP_871424.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614564|gb|ABK50018.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 298

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 144/301 (47%), Gaps = 13/301 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A ++L LS+S+IS++I+ LE  +GI+L  R  R L+LT+ G+
Sbjct: 4   FSALPIFVTVVECGSFSAAGQKLGLSKSAISKRITQLEQHLGIQLLQRTTRSLSLTDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +            +     + E    P G LRI+  +  G+  +   + EFL  YPDIQ+
Sbjct: 64  RYFEYIRPAVQLTQEGLDAISELQQTPKGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P++  
Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPAYLAQHGSPMTPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
            L +HN + +        +   W  +   P G  R+      QVN+  +I Q C+ G GI
Sbjct: 183 GLTQHNCLFYSYF----QDGVEW--SFHSPYGVQRVQPKGNYQVNNSDAIHQACLDGLGI 236

Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A LP +IV+ +    R   I+ D   P   +Y  YP+      K+     F+  K    K
Sbjct: 237 ANLPRFIVESDLQAGRLQTILTDFPLPEHGIYAVYPQRKYLPTKVTVLIGFLMEKLASGK 296

Query: 299 F 299
           F
Sbjct: 297 F 297


>gi|260467216|ref|ZP_05813392.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259028991|gb|EEW30291.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 307

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 151/295 (51%), Gaps = 14/295 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LRVF  VA + SF+ A   L L +S++SR I+ LE ++G +LF R  R + LT  
Sbjct: 2   IDLNDLRVFERVAATSSFSAAGRALGLPKSTVSRNIARLEQQLGARLFQRTTRAVILTSA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    +++  +++ T   ++  S +P G LR++  I  G N+L  +L EFL  +P +
Sbjct: 62  GEALQARCADLMARIDETVAYVEGLSGEPRGLLRVSAGIGFGINVLSRHLPEFLARFPHV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L ++D+D+  +  D AIR+  P+  S+L+  +L ++     AAP YL    +PL+
Sbjct: 122 DVSLDLTSRDLDLVAERVDVAIRM-GPLPDSALVATRLGSVRRCLAAAPDYLSRHGKPLT 180

Query: 183 IQELDKHNLITF--GDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             +L KH  I    GD   +    +    +A VD      R+S   VN  L+I Q    G
Sbjct: 181 PADLSKHECIEMPRGDGRMRTWHFYRGGEMAAVDV---HNRVS---VNDALTIHQLVRNG 234

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +G+ +L  Y+  D+     LV ++ D       V   +P   + +  +++F +F+
Sbjct: 235 AGLGVLSTYLCVDDFAEGRLVPLLADWDIAPVEVNLLFPSKRELSQTVRSFVDFM 289


>gi|91226712|ref|ZP_01261401.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91189009|gb|EAS75292.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 290

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 151/291 (51%), Gaps = 13/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++L+E G
Sbjct: 3   NWEGVSEFVAVAETNSFTAAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G LR+   +  G+  L   L +FL  YP + 
Sbjct: 63  QLYYQQCKHLVEGLELAELAITQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L N+ +D+     D AIRL + +Q SS+I ++L +   +  A+P YL+   EP ++
Sbjct: 123 LDLVLTNQKLDLIEQGVDVAIRLGR-LQDSSMIAKRLSSRQNYVCASPMYLERFGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL +H  +  G +      D+ W    ++     R+S  ++ NS  ++M     G G+ 
Sbjct: 182 SELARHQCLV-GSV------DY-WHFKENKRDKSLRVSGRIKCNSGFALMGAAKRGLGLV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY V+   DN  LV ++ D       ++  YP++   + K++   +F+
Sbjct: 234 QLPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFL 284


>gi|109897758|ref|YP_661013.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109700039|gb|ABG39959.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 295

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 150/290 (51%), Gaps = 13/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA + SFT A++ L +S + +SRQIS LET + +KLFYR  R ++LT++G 
Sbjct: 4   WEGINEFVYVAEAESFTQASKNLAISTAQVSRQISALETRLNVKLFYRTTRKVSLTDEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    V   L+  +  +     KP GK+R+   +  G+  +   + +F+L Y ++++
Sbjct: 64  LFYQHCRSVLDGLDAAERAITNLQSKPQGKIRLTAPVTYGEQQILPLVNDFMLQYAEVEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+ +D+     D AIRL K +  SS++ RKL T      A+P YL     P S+ 
Sbjct: 124 TAYLSNQKVDLVEQGYDLAIRLGK-LSDSSMMARKLGTRTNSVCASPAYLAKFGFPHSLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL KH+ +  G L      D+ W   VD      R+   L+ NS  S++   + G GI  
Sbjct: 183 ELSKHSCL-LGTL------DY-WHFRVDDKERNIRVKGRLRYNSGFSLVDAALKGLGIVQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPDY V+   ++  LV ++++       ++  YP     + K+++  +++
Sbjct: 235 LPDYYVQEHLESGALVSLLDNYRESEEGIWAIYPRNRHLSPKIRSLVDYL 284


>gi|158422198|ref|YP_001523490.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS
           571]
 gi|158329087|dbj|BAF86572.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS
           571]
          Length = 313

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 146/289 (50%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W  LR    VARSGS T AA Q+ +  S++SR+I+ LET +G KLF R   GL LT Q
Sbjct: 17  FEWSDLRYLLTVARSGSLTAAARQMGVEHSTVSRRITALETALGAKLFDRRTGGLLLTPQ 76

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +     + Q E+  + +  SG +RI      G   L   L  F   +P +
Sbjct: 77  GERLMAAAEGMEALALSAQGEIAGADLGVSGTVRIGAPDGFGTVFLAPRLGAFSRQHPAL 136

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   + I +S   AD AI L +P +   L  RKL    +  YAA  YL+      S
Sbjct: 137 EIQLLAMPRLISLSKREADIAISLSRP-KEGRLHARKLTDYRLGLYAAVAYLETHGPIES 195

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              L +H  I +  DLI     + +++  V R + +PRI   + ++ ++ M+    G+G+
Sbjct: 196 RAALGRHPFIGYIDDLI--YAPELDYVPLVAREL-KPRI---KSSNLVAQMEATRAGAGV 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP ++    P+LV ++   ++ + T Y      +++  +++A  +FI
Sbjct: 250 CVLPCFMGDAMPDLVPVLRGEVSLTRTFYLVTHTDMRDLARVRAAADFI 298


>gi|320159388|ref|YP_004191766.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
 gi|319934700|gb|ADV89563.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
          Length = 307

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 151/290 (52%), Gaps = 9/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           +R F +V ++GSF+ AA +   +Q+++S++++ LE ++G+KL  R +R L+LTE G    
Sbjct: 7   IRAFVLVVQTGSFSAAAREQGTTQATMSKKVAALEDDMGVKLLTRTSRELSLTEVGQDYF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           HR  S +  +L+  +   +    +P+G LRI+  +  G   +   L EFL  YP++++ L
Sbjct: 67  HRCVS-ILSELDEAESNARSQMGRPTGSLRISAPVVFGNRFIGPVLAEFLRSYPELKVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +K +D+  +  D AIR ++ ++ SSLI R L    M   AAP YL    EP S ++L
Sbjct: 126 HLSDKHVDLVAERIDLAIRAKQ-LEDSSLIARHLFDNPMVLVAAPSYLSTNIEPTSPEQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN I +  L    +  F+               C   +S   I+Q  + G GIA LP 
Sbjct: 185 ASHNCILYSMLKSIGVWHFSQKGKSQSVAVSGSCRC---DSGDVILQLAIDGVGIAQLPV 241

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++VK   D+  LV ++ +        +  +P+      K+++F +FI LK
Sbjct: 242 WMVKEFVDSGQLVILLREFEVNPLPFHAVFPQNRYVPLKVRSFLDFIKLK 291


>gi|59713214|ref|YP_205989.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59481462|gb|AAW87101.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 294

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 149/286 (52%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSF+   ++++ SQ++IS++++ LE ++G+KL  R +R  +LT  GS  +
Sbjct: 7   MRAFVRVVETGSFSATGKEMNTSQTTISKKVAALENQIGVKLLTRSSRDHSLTPAGSDYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +L+  + +++  +  P G +RI   +  G+ LL   + EF   YPDI+I L+
Sbjct: 67  QTCVNILSELDEVEAKVRSKATLPQGSIRITAPVAFGRFLLAPIVAEFFQHYPDIKIDLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K +++  +  D AIR  K ++ SSL+ R L+   M+ +A+P YL+   EP    EL 
Sbjct: 127 LNDKHVNLISEGIDVAIR-AKNLEDSSLVARHLLDNPMYLFASPDYLEQYGEPKHPNELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +  L    + +FN     ++    P     Q ++   ++   + G GI  LP +
Sbjct: 186 THNCLIYSGLQDAHIWNFNH---GEKEYSVPVKGNFQSDNGDVLLDVALTGVGIVSLPIW 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + K    + +L +IM         +   YP+      K++ F +F+
Sbjct: 243 MAKAHLTSGHLRQIMTKYSGQQLPINAIYPQRRYTPLKVRCFIDFL 288


>gi|308049767|ref|YP_003913333.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307631957|gb|ADN76259.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 297

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 147/293 (50%), Gaps = 27/293 (9%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA + SFT A ++L +S + +SRQIS LE  +G +L YR  R ++LTEQG 
Sbjct: 4   WEGINEFVAVAETESFTAAGQRLGISTAQVSRQISALEVRLGCQLLYRTTRRVSLTEQGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L++    +   LE  Q  + +      G+ R+   ++ G+  L   L EF   YP++Q 
Sbjct: 64  QLYQHCRPLLDGLEEAQRLVSDQQDVLRGRFRLTAPVNFGEQRLAPLLAEFCADYPEVQA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++L N+ +D+  +  D AIR+ + +  SSL  R+L +  +   A+P YL+    P  I 
Sbjct: 124 EMVLSNQRLDLIQEGLDLAIRIGE-LPDSSLKARRLGSRELVVCASPAYLQRAGTPQDIG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRI----SCLQVNSYLSIMQYCV 236
           ++ +H          +C+     L T D    R  G+PR        + NS +++++   
Sbjct: 183 DIARH----------RCL-----LGTTDIWRFRVGGQPRTVKVNGAFRCNSGVAVLEAAQ 227

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G G+A LP + +++   +  LV ++         ++ CYP     T  ++AF
Sbjct: 228 QGLGLAQLPAHYLEEALSSGRLVTVLSAFTPEPEDIWACYPPNRHVTATVRAF 280


>gi|149909840|ref|ZP_01898491.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149807172|gb|EDM67128.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 295

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 142/281 (50%), Gaps = 24/281 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++    V  +GSFT A+E+L +S++ +S+ ++ +E ++G++LF R  R L LTE G +
Sbjct: 5   DGIKTVIAVVETGSFTAASERLAMSKALVSKYVAEVEAQLGVRLFNRSTRRLALTEAGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  +       +      P G LRI+T++  G  +L   L  FL  +PDI++ 
Sbjct: 65  YYDSALPLLGEFSELVDNVTGEQTSPRGNLRISTSVTFGDTMLSPKLAAFLARFPDIKVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ID+  +  D  IR+   +  SSLI RK+    +   A+P YL     P   Q+
Sbjct: 125 LQLTDRMIDMLEEAVDVVIRIGS-VDDSSLIARKIADFPLTLCASPQYLATHGHPRKPQD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRI----SCLQVNSYLSIMQYCVL 237
           +++HN          C+ D N+      P+    G+  I    S + VNS  ++    + 
Sbjct: 184 INQHN----------CIIDSNFRIGKQWPVIDSNGKTEIISVKSNVAVNSPRAVKAMAIS 233

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVI----TPSFTVYFCYP 274
           G GIAL+P +I+KD      I+E+V+    T +F ++  YP
Sbjct: 234 GGGIALIPHFIIKDALE-SGILEEVLPGYSTLTFGMFAIYP 273


>gi|94500932|ref|ZP_01307457.1| transcriptional regulator, LysR family protein [Oceanobacter sp.
           RED65]
 gi|94426872|gb|EAT11855.1| transcriptional regulator, LysR family protein [Oceanobacter sp.
           RED65]
          Length = 311

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 149/291 (51%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD +++ +F  V  +GSFT AA+ L L +S++SR+I+ LE  +G++L  R  R L+LT+ 
Sbjct: 4   FDLNEIAIFVKVVDAGSFTGAAKSLGLPKSTVSRKITQLEERLGVRLLQRTTRTLSLTDT 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   S +   +E   I + E   KP G LRI   +  G  +L   + EFL   P+I
Sbjct: 64  GSAYYNQCSRIIGDVEEANIAVTEMQSKPKGLLRITAPMLFGSRVLSDMVSEFLQKNPEI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++++L ++ +D+  +  D A R+   +  SSLI R L  I     A+P Y+K    P  
Sbjct: 124 QVEMMLTDQQLDLIQEGIDVAFRVGH-LADSSLIARPLGEIKTIVCASPEYIKKHGSPNH 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H+ + +    PK   +F+        I  PR+   +VN  LS+    + G GIA
Sbjct: 183 PSELINHSTLGWS---PKGNWEFDSPEQFSAEI-NPRV---RVNDILSMRMLAINGVGIA 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290
            LP ++  ++ N  R+   +   S++   ++  Y      + K++ F +FI
Sbjct: 236 RLPTFLCAEDINEGRLNPVLCDWSYSGVPIHALYASNRHLSVKVRTFVDFI 286


>gi|71282049|ref|YP_270171.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147789|gb|AAZ28262.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 309

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 148/286 (51%), Gaps = 10/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V ++GSFT AAEQL+ S+S IS+ I+ LE  +G+KL  R  R LTLTE G   +  
Sbjct: 16  AFVCVVQTGSFTAAAEQLNTSKSVISKYITRLEKRLGVKLLARTTRRLTLTEIGRTFYEG 75

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           + +    ++  +  +     KP G L+I   +  G   +   L+EF+  YP++QI L  D
Sbjct: 76  SRQGLEAIDNAEEAVSFLQGKPRGTLKINAPLSFGALHIAPALEEFIHRYPEMQIDLRFD 135

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +K ID+  D  D  +R+   ++  +LI R++   H    AAP+YL     P   ++L  H
Sbjct: 136 DKKIDMIKDGFDLTVRITHQLE-GNLIARRIAPCHHALVAAPNYLAKRGTPKRPEDLVAH 194

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N+IT+     +   ++ + A   +P        +Q+N+ L+I +  + G GI+ +P + V
Sbjct: 195 NVITYQ--YQQSPWEWEFTAAKSKPKRVRVNGSVQMNNSLAIREAVLAGVGISRMPTFAV 252

Query: 250 KDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            ++    R+++  + P +     ++Y  +PE      K +AF +++
Sbjct: 253 GEDIKSGRLIQ--LLPKYSLLEHSIYLVFPERNHMAPKTRAFIDYM 296


>gi|301166209|emb|CBW25784.1| putative LysR family transcriptional regulator [Bacteriovorax
           marinus SJ]
          Length = 286

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 149/291 (51%), Gaps = 12/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L+ F  V+  GSFT AAE L   +S +SR IS LE E+G++L  R  R  +LT +
Sbjct: 1   MDLNLLKTFSKVSELGSFTKAAEVLKQPKSRVSRAISRLEDEIGLELIRRTTRQTSLTTE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++ H+L+     L +S  + SG LRI    DLGQ++L   + ++  LYP++
Sbjct: 61  GEAFYNRIKDLIHQLDEEIDSLNDSKKEISGVLRITAPEDLGQSILLDIIAKYNDLYPNV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q +L  + +D++ D  D A R+ K ++ S+LIQR    +H  A A+  Y++    P S
Sbjct: 121 EVQTLLTGEYLDLTKDNIDLAFRVGK-LEDSNLIQRSFKDVHFVAIASREYIQRYGLPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H L+TF         DFN L +   P  E     +  +S   ++   + G+GI+
Sbjct: 180 TKDLHQHKLLTFKGF------DFNNLNSASSP--EALKYQINTSSIPMLLNMALEGNGIS 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++P +  ++      LV +      P  T+   Y      + + +AF + +
Sbjct: 232 IVPSFYCEEYIRTGELVHLFPKWRGPKHTIKILYTATSNLSKRTRAFLDLV 282


>gi|218708908|ref|YP_002416529.1| LysR family transcriptional regulator [Vibrio splendidus LGP32]
 gi|218321927|emb|CAV17921.1| transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 295

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 144/289 (49%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE G +
Sbjct: 8   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S +  +L +T  EL +     SGK+RI    +L + ++     EF+  YPDI I+
Sbjct: 68  FFNECSPLLQRLSSTAEELTDVCKGASGKIRITAPSNLTKRMMMPMFSEFMTQYPDINIE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+++N+   +     D   R+  P + SSLI RK+  +     A+P YL     P   +E
Sbjct: 128 LMMNNQADQLDPTEWDVIFRV-GPQRDSSLIARKISEVKDILIASPDYLAKNPAPSHAEE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+L+    LI   + + N    V+   G    + L V     + Q C  G GI L+P
Sbjct: 187 LANHSLLKGYPLIKWQLSNSNEETVVNSEKGRFNANALNV-----VRQACSEGLGITLMP 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D +++   ++ +LV+++ED       +Y  Y        K++ F +F+ 
Sbjct: 242 DVMIREYIEDGSLVQVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 290


>gi|294678954|ref|YP_003579569.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294477774|gb|ADE87162.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB
           1003]
          Length = 301

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 140/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +    V PSG LRI+   D G NLL   L +FL  YP++ + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQVAPSGLLRISVATDFGVNLLSPVLGDFLQEYPEVTVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+ + ++ S+L  RKL        A+P Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAIRVGE-LEDSTLKARKLTETAKRMIASPRYFEKYGRPTKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NDHKLLHYSNQSNGNV----WKITA--PSGERRQVRSAGWLTVNDGQSLLHAAIAGLGIA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  D      +   M D+   +  +Y  YP       K++AF +F+
Sbjct: 239 YLPSFLYADAMKKGQVEEAMPDLPMETLGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|323499532|ref|ZP_08104502.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio sinaloensis DSM 21326]
 gi|323315405|gb|EGA68446.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio sinaloensis DSM 21326]
          Length = 291

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 142/289 (49%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S +  +L +T  EL +     +GK+RI    +L + ++      F+  +PDI ++
Sbjct: 64  FYNECSPLLGRLTSTAQELSDECRGAAGKIRITAPSNLTKRMMMPMFNAFMKDFPDINLE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N    +     D   R+  P + SSLI RK+ ++     A+P YL  C  P   +E
Sbjct: 124 LTTSNHSEQLDPTEWDVIFRV-GPQRDSSLIARKINSVEDILVASPEYLSRCPAPKHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+L+    L+   + + N    ++   G       Q N+   +   C  G GI L+P
Sbjct: 183 LHQHSLLKGAPLLKWQLSNQNGETVINNDKGR-----FQANALNVVRSACSDGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++K   D+ +LVR++ED       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMLKEFIDDGSLVRVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|84394302|ref|ZP_00993026.1| AphB/LysR family protein [Vibrio splendidus 12B01]
 gi|86148373|ref|ZP_01066666.1| AphB/LysR family protein [Vibrio sp. MED222]
 gi|84375070|gb|EAP91993.1| AphB/LysR family protein [Vibrio splendidus 12B01]
 gi|85833856|gb|EAQ52021.1| AphB/LysR family protein [Vibrio sp. MED222]
          Length = 291

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 144/289 (49%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S +  +L +T  EL +     SGK+RI    +L + ++     EF+  YPDI I+
Sbjct: 64  FFNECSPLLQRLSSTAEELTDVCKGASGKIRITAPSNLTKRMMMPMFSEFMTQYPDINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+++N+   +     D   R+  P + SSLI RK+  +     A+P YL     P   +E
Sbjct: 124 LMMNNQADQLDPTEWDVIFRV-GPQRDSSLIARKISEVKDILIASPDYLAKNPAPSHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+L+    LI   + + N    V+   G    + L V     + Q C  G GI L+P
Sbjct: 183 LANHSLLKGYPLIKWQLSNSNEETVVNSEKGRFNANALNV-----VRQACSEGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D +++   ++ +LV+++ED       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMIREYIEDGSLVQVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|170723221|ref|YP_001750909.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169761224|gb|ACA74540.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 298

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 147/291 (50%), Gaps = 15/291 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA SG FT AAE++ +S S ISRQI+ LE  +  +L YR  R +TL+E G 
Sbjct: 5   WEGIDEFVAVAESGQFTAAAERMGVSSSHISRQIARLEERLQTRLLYRSTRRVTLSEAGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 65  TFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYPQLRV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L N+ +D+  +  D AIRL + +  S L+  +L    M+  A+P YL+    P S+ 
Sbjct: 125 EVELSNRTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLERYGRPHSLS 183

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL +HN L+   DL         W    D R I +      + NS  +++   +LG G+ 
Sbjct: 184 ELARHNCLVGSSDL---------WALQQDGREISQRVQGNWRCNSGQAVLDAALLGMGLC 234

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY V ++ N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 235 QLPDYYVLEHLNSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYL 285


>gi|254788428|ref|YP_003075857.1| HTH-type transcriptional regulator YhjC [Teredinibacter turnerae
           T7901]
 gi|237685588|gb|ACR12852.1| putative HTH-type transcriptional regulator YhjC [Teredinibacter
           turnerae T7901]
          Length = 303

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 148/289 (51%), Gaps = 7/289 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++F  VA  GSFT AAE LH+++  +++ IS LE  VG++L  R  R   LT +G  L
Sbjct: 6   QLQIFVTVAEMGSFTRAAESLHMARPGVTKAISELEKNVGVRLLQRTTRRTNLTGEGEAL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +++   ++ TQ     S  +PSG+LRI   + L ++++   L  F  LYPDI + L
Sbjct: 66  YTKATQLLRDVDVTQNLFGGSKERPSGRLRIDIPVALAKSMVIPALPGFRSLYPDISVIL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            ++++ ID+     DC +RL + + +SS+I R++ TI M   A+P YL     P SI+ L
Sbjct: 126 GVNDQPIDLIAKSVDCVLRLGQ-LTASSMIGRQIATIKMVVCASPEYLARKGPPRSIEAL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
           ++H  +T      +      W    ++ I E  + S L  N   +++   +   G+  +P
Sbjct: 185 NEH--LTINYFAGQKHTPLAWFFKRNQKIEEILLPSSLMANDAEAVVACALNHMGLIQVP 242

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +      LV+++E+       +   YP       +++ F N++ 
Sbjct: 243 GILVAEELHQGALVQVLEEFSGIELPLSIMYPNRQYLAPQVRTFINWVI 291


>gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151280913|gb|ABR89323.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 309

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 145/297 (48%), Gaps = 16/297 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A +GSFT AA    ++ +++SR IS LE  +G++LF R  R + LT+ G    
Sbjct: 13  IELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E   +L   + ++    +KP+G LRI+     G   L   L EF   YPD+Q+++ 
Sbjct: 73  EQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQVEVH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N++ID + +  D AIR R P   S+LI RKL    +   AAP YLK   +P ++++L 
Sbjct: 133 ISNRNIDFAEEAYDLAIRGRAPT-DSNLIARKLEEAELVLVAAPSYLKRAGKPKTLEDLQ 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY------LSIMQYCVLGSGI 241
           KH  I F   +P       W+   +  +    +  +    Y      L I+     G+G+
Sbjct: 192 KHECIQFE--LPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDVLGIVTLARSGAGL 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIFLK 293
                +IV+D+    R++E  + P F          YP A   + +++AF +F+  K
Sbjct: 250 VQTYRFIVEDDLREGRLVE--LLPQFGATSRPFILLYPHARHLSSRVRAFVDFLMEK 304


>gi|209965231|ref|YP_002298146.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
 gi|209958697|gb|ACI99333.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
          Length = 311

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 156/293 (53%), Gaps = 14/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F  VA + SFT AAE++ LS+S+ SR+I+ LE  +G +LF+R  R ++LT+ G  
Sbjct: 5   DDLRLFTCVAETRSFTRAAERMGLSKSAASRRIAELEARLGARLFHRTTRSISLTQVGQG 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   S++   LE  +  +      P G L++A  +  G   L   +  F   +P++Q+ 
Sbjct: 65  FHERVSQILADLEEAEGLVASQHAAPRGVLKLAAPMSFGLLHLGPAICAFQERFPEVQVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D A+R+ + ++ SSLI R++      A A+P YL+   EP +   
Sbjct: 125 VDLSDRFVDLVDEGYDLAVRIGR-LKDSSLIARRICPARRVAVASPAYLQRRGEPATPDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L +H+ + + +      + +++ A       RP   P ++ ++ N+   +    V G GI
Sbjct: 184 LAEHDCLHYSNA--SVADHWSFRAAPGSEMLRP-ARPAVT-MRANNGDILRTAAVAGRGI 239

Query: 242 ALLPDYIVKDNPNLVR----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +IV D+    R    +++  ++PS  ++  YP     + K++AF +FI
Sbjct: 240 AVLPTFIVGDDLAAGRLRAVLLDWTVSPS-ALHAVYPANRHLSPKVRAFVDFI 291


>gi|294142254|ref|YP_003558232.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328723|dbj|BAJ03454.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 300

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 141/285 (49%), Gaps = 5/285 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + VF  V ++G F+ AAE +  S S IS+++S LE  +G++L  R  R + LT +G 
Sbjct: 7   FDGVMVFTQVVKTGGFSAAAELMGHSTSYISKEVSKLEERLGVRLLNRTTRSIGLTPEGK 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++    E     L +  V P G LR++T +  G N LQ  L E++ LYP++ +
Sbjct: 67  AYYQECQQLVADAEQAVNMLTQHEVAPKGTLRLSTPVGFGNNYLQPILAEYMRLYPNVSL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D+  +  D AIR    ++ SSLI RK+ +   +  A+P YL     P   Q
Sbjct: 127 DLDLNDRKVDVVAEGYDLAIRASLQLEESSLICRKVFSCKGYIVASPGYLSKHGHPHHPQ 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN   + +   K    + +     +P        L  NS    +   +   GI  L
Sbjct: 187 ELSRHNCFCYSN--HKSPNKWQFNDKEGKPYTVEVRQKLVCNSAEMELALVLDDLGICRL 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P + ++D   +  LV + E++  P   V+  YP     + K++AF
Sbjct: 245 PMFYMEDKIKSGKLVILFEELPAPEIDVFVVYPSRKHQSPKVRAF 289


>gi|54303517|ref|YP_133510.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46916947|emb|CAG23710.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 306

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 151/298 (50%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FD + L +F  V    SFT AA +L +++S+ISR+I+ LE  +G +L  R  R L LT
Sbjct: 8   IGFDLNTLEMFARVVACHSFTQAAAELEITKSTISRKIAELEKHLGTRLLTRSTRTLVLT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++  + +   +E T++E+  S     G L I   +++G  LL   +KEF+ L+P
Sbjct: 68  KEGKTFYQSCAHIIELIEQTELEVMASHDLIRGPLNIVMPVEVGNGLLGRCMKEFMKLHP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L L N+ +D+  +  D  +++ + +  SSLI R          A+P YL     P
Sbjct: 128 HVTIHLELSNRKVDLIAEGIDLKVQVGE-LDESSLIARTFHYSTRILVASPEYLAEYGTP 186

Query: 181 LSIQELDKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                      I  GDL    + +++ + + T D+ +         VN+  S+++ C+ G
Sbjct: 187 -----------IILGDLKAPHQQIKNSSSIRTADKNVLAGLPYRFNVNTINSLLEACLDG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI  +P++I K+   +  LV ++ DV +    V F YPE    + +L+ F +F  ++
Sbjct: 236 FGITFMPEFICKEHIVSGRLVHVLPDVYSAQIPVSFVYPERKLISKRLREFIDFTIMR 293


>gi|114045851|ref|YP_736401.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113887293|gb|ABI41344.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 298

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 144/301 (47%), Gaps = 13/301 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A ++L LS+S+IS++I+ LE  +GI+L  R  R L+LT+ G+
Sbjct: 4   FSALPIFVTVVECGSFSAAGQKLGLSKSAISKRITQLEQHLGIQLLQRTTRSLSLTDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +            +     + E    P G LRI+  +  G+  +   + EFL  YPDIQ+
Sbjct: 64  RYFEYIRPAVQLTQEGLDAISELQQTPKGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P+   
Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCFSVICASPAYLAQHGSPMVPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           +L +HN + +        +   W  +   P G  RI      QVN+  +I + C+ G GI
Sbjct: 183 KLTQHNCLFYSYF----QDGVEW--SFQSPDGMQRIQPKGNYQVNNSDAIHRACLDGLGI 236

Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A LP +IV+ +    R   I+ D   P   +Y  YP+      K+     F+  K    K
Sbjct: 237 ANLPRFIVESDLQAGRLQTILTDFPLPEHGIYAVYPQRKYLPTKVTVLIEFLMEKLASGK 296

Query: 299 F 299
           F
Sbjct: 297 F 297


>gi|148652840|ref|YP_001279933.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571924|gb|ABQ93983.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1]
          Length = 298

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 144/278 (51%), Gaps = 19/278 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA   SFT AA++L +S + +SRQ+S LE  + IKL YR  R ++LTE+G 
Sbjct: 7   WEGISEFVYVAEYESFTRAAKELGISIAQVSRQVSALEKRLNIKLLYRTTRKISLTEEGQ 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    V   L+  +  +     KP GK+++   +  G+  L   + +F++ YPDI++
Sbjct: 67  VFYKHCRGVLDGLDAAEQAISSLQSKPQGKIKLTAPVTYGEQQLLPLINDFIVQYPDIKV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+ +D+     D A+R+ K +  S+L+ +KL        AAP YL     P ++ 
Sbjct: 127 TAFLSNQKLDLVEGGYDLAVRIGK-LSDSTLMAKKLGHRTNFVCAAPDYLDRYGTPQTLA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           EL  HN +  G L      D+ W    A  +R I   R+S  ++ NS  S++   + G G
Sbjct: 186 ELASHNCL-LGSL------DY-WHFKQAQSERNI---RVSGSVRYNSGYSLVDAALKGIG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           +  LPDY V+   D+  L+ +++D   P   ++  YP+
Sbjct: 235 MVQLPDYYVQKYLDSGKLISVLDDFREPEEGIWAVYPQ 272


>gi|157960095|ref|YP_001500129.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845095|gb|ABV85594.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 289

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 151/292 (51%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT A+++L +S + +SRQIS LET +  KLF+R  R +++TE 
Sbjct: 2   FNWEGVSEFVAVAEAESFTKASQRLGISTAQVSRQISALETRLASKLFHRTTRKVSVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +      P G L+I   +  G+  +   + +F  LYP++
Sbjct: 62  GRVYYQHCRQVLDGLEEAERAITNLQTTPRGLLKITAPVTYGEKTIAPLINDFASLYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D+  +  D AIRL   ++ SS++ +KL +   +  A+P+YL     P S
Sbjct: 122 EVKLNLSNQKLDLVDEGYDLAIRLGH-LEDSSMMAKKLSSRTQYVCASPNYLATYGLPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + ELD+HN +  G +      D+ W           R+   L  NS  +++   + G GI
Sbjct: 181 LSELDQHNCL-IGTM------DY-WRFQESGKTRNVRVKGSLSCNSGHALVDAAIKGIGI 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V    ++  L  ++E    P   ++  YP+    + K++   +F+
Sbjct: 233 VQLPDYYVLPFIESGELTPLLEQNRQPEEGIWALYPQNRHLSPKVRMLLDFL 284


>gi|170719969|ref|YP_001747657.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757972|gb|ACA71288.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 301

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 151/297 (50%), Gaps = 9/297 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF+ AA Q  LS +++SRQ++ LE  +G +L  R  R L LTE G+  +
Sbjct: 7   MQTFRRVVDLGSFSAAASQAGLSHTALSRQVTQLERHLGTQLLARTTRRLHLTEAGALFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++  +++   +EL E   +PSG LR+      G+  L   L EF+  YP +QI+L 
Sbjct: 67  RHCVQILEQMQAMTLELSEHQKQPSGTLRLGVATAFGELELGRWLPEFVERYPQLQIELH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ ID+  +  D  +R+   +  SSL+ R+L T  +   AAP YL+    P S  +L 
Sbjct: 127 CSDRFIDLLEEEIDICLRVTDHLPDSSLVARRLATSEVLLVAAPRYLERHGTPASPDDLA 186

Query: 188 KHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H L+ +  L+ P+ +   N  A   R I  PR   +  NS +++    + G GIA    
Sbjct: 187 SHPLLGYSQLLHPQRLLLANE-AGEQRQILMPRR--VSANSPMALRAAAIGGLGIASFDC 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWK 298
           +IV+D   +  LV ++ D    +  +Y  YP++     K++A  +F+  F     W+
Sbjct: 244 FIVQDALADGRLVPVLADWRLAARGLYAVYPQSRYLAPKVRALLDFVQAFYTRPPWR 300


>gi|87118407|ref|ZP_01074306.1| putative transcription regulator protein [Marinomonas sp. MED121]
 gi|86166041|gb|EAQ67307.1| putative transcription regulator protein [Marinomonas sp. MED121]
          Length = 312

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 148/297 (49%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L +F  +  +GSF+ A E L+ S+S++S++I+ LE E+G +L  R  R LTLTE G 
Sbjct: 4   FNALPIFVALVETGSFSKAGEHLNSSKSAVSKRITQLENELGAQLLNRTTRSLTLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   S+     +  +  +     KP GKL+++  +  G+  +   +  F+ LYPDIQI
Sbjct: 64  AYYDYASQALALAQEAENAVSLMQAKPKGKLKLSVPMTFGRLYIAPIIPAFMALYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I+D+K  D      D  IR+ + ++ SSL+ +KL     +  AAP YL     P   +
Sbjct: 124 EMIMDDKRQDFIKQGFDIGIRIGQ-LEDSSLVAKKLADCQSYLCAAPAYLDKQGTPKKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP--------IGEPRISCLQVNSYLSIMQYCV 236
           +L +HN + +     +  +D+ +L    R         I        +VN+  ++ +  +
Sbjct: 183 DLTRHNCLYYSYF--RAGQDWQFLKKSVRHRNYQDSDFIRVAAKGNYRVNNSEALYEAAL 240

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  +P +IV        L+ ++ D   P   +Y  +PE    T K++ F +F+
Sbjct: 241 AGLGIVNMPTFIVGPAIRETQLIPLLTDYPQPLHGIYAIFPERKHLTAKVRVFIDFL 297


>gi|149202558|ref|ZP_01879530.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
 gi|149143840|gb|EDM31874.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
          Length = 309

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 144/292 (49%), Gaps = 19/292 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  VA +GSF  AA +LHLS  +++R I+ LE  +G ++F R  R LT+T+ G + 
Sbjct: 6   EIEVFIAVAEAGSFAGAARRLHLSPPAVTRAIAALEDRLGARVFQRTTRSLTITDVGERF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 V   L+T + E    +  P G L +  ++  G++ L   +  FL+ +P + + +
Sbjct: 66  LGAARRVLGDLDTAEREAMGETTAPQGHLTVTASVTFGRSALGPMVGSFLVAHPRVSVSV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +++  +  D AIR+ + +  S LI ++L T+H    A+P YL     P +  +L
Sbjct: 126 LLLDRVVNLVEEGVDLAIRIGE-LPESRLIAKRLGTVHRILVASPEYLAQHGTPAAPADL 184

Query: 187 DKHNLITFGDLIP------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             H +I F  L+P      +  +    +A   R         L++N  ++ +   +LG G
Sbjct: 185 RHHAVIAFTGLMPNREWRHRSGQRSASVALAPR---------LEINDAVAAIDAAILGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I     Y+V  +     LV +++    P   V   YPEA     KL+AF +F
Sbjct: 236 ITPTLSYMVAGHIRAGRLVPVLQAHTLPPQPVNLVYPEARLMAPKLRAFLDF 287


>gi|149188267|ref|ZP_01866561.1| hypothetical transcriptional regulator [Vibrio shilonii AK1]
 gi|148837856|gb|EDL54799.1| hypothetical transcriptional regulator [Vibrio shilonii AK1]
          Length = 310

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 140/296 (47%), Gaps = 21/296 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   VF  V  SGSFT AAE+   S S IS++++ LE  +G++L  R  R L LT +G  
Sbjct: 8   DGYVVFVEVVDSGSFTFAAERTQHSTSYISKEVTKLEERLGVRLLQRTTRTLKLTPEGEN 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   +V    +  +  L  S ++PSG L+I   + LG + +     ++   YP + + 
Sbjct: 68  FYQHARDVVDAAQAAEESLSGSQIEPSGLLKITCPVALGLSTMSAIFTQYAQRYPKVTLD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +K +DI     D AIR    ++ SSLI RKL T      A+P YL+    P +  E
Sbjct: 128 IDLSDKKVDIIEQGIDIAIRASDRLEDSSLISRKLFTDRGITVASPAYLQQYGTPRAPSE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWL--------ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           L  HN+I++         +  W+        A+VD        S + VNS    ++ C  
Sbjct: 188 LAHHNIISYS----YAKNNKRWVYEDLDGNEASVD------ITSRITVNSAKMELEMCKA 237

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP + +    +   L+ + +D       VY  YP     + K++AF++ +
Sbjct: 238 GLGITRLPRFYLGNELETGELIELFDDYPKHQLGVYMVYPSRKHMSAKVRAFKDIV 293


>gi|120555165|ref|YP_959516.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8]
 gi|120325014|gb|ABM19329.1| transcriptional regulator, LysR family [Marinobacter aquaeolei VT8]
          Length = 302

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 148/295 (50%), Gaps = 19/295 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           + W+ +  F  VA + SFT AA++L +S + +SRQ+S LE  +  +LFYR  R +++TE 
Sbjct: 2   YRWEGINEFVAVAETESFTRAAKRLDVSTAQVSRQVSALEARLSTRLFYRTTRRVSVTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +    + P G+LR+   +  G+  +   + +F+L YP++
Sbjct: 62  GQIFYQHCRQVLDALEQAERSITNMQLVPRGRLRLTAPVTYGEKSIAPLVNDFVLRYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + + L N+ +D+  +  D A+R+ K ++ S+L+ R+L +  ++  A+P YL     P S
Sbjct: 122 DVDMKLTNQTLDLVAEGYDLAVRMGK-LEDSTLMARRLASRTLYVCASPDYLATHGTPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL  HN +  G+L      D+       +P        ++ +S  +++   + G GI 
Sbjct: 181 LTELANHNCL-LGNL------DYWRFQEAGQPRNVRVTGNIRCDSGRALLDAALKGIGIV 233

Query: 243 LLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY V+         P L R  ED       ++  YP     + K++   +F+
Sbjct: 234 QLPDYYVQSALDSRLLIPVLTRYQED----DDGIWAVYPHNRHLSPKIRLLLDFL 284


>gi|113971935|ref|YP_735728.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113886619|gb|ABI40671.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 296

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 145/292 (49%), Gaps = 13/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A ++L LS+S+IS++I+ LE  +GI+L  R  R L+LT+ G+
Sbjct: 4   FSALPIFVTVVECGSFSAAGQKLGLSKSAISKRITQLEQHLGIQLLQRTTRSLSLTDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +            +     + E    P G LRI+  +  G+  +   + EFL  YPDIQ+
Sbjct: 64  RYFEYIRPAVQLTQEGLDAISELQQTPKGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P+  +
Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLITRKIAPCLSVICASPAYLAQHGSPMVPR 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           EL +HN + +        +   W  +   P G  RI      QVN+  +I + C+ G GI
Sbjct: 183 ELTQHNCLFYSYF----QDGVEW--SFQSPNGMQRIQPKGNYQVNNSDAIHRACLDGLGI 236

Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP +IV+ +    R   I+ + + P   +Y  YP+      K+K   +F+
Sbjct: 237 ANLPLFIVESDLQAGRLQTILTNFLLPEHGIYAVYPQRKYLPTKVKVLIDFL 288


>gi|148977682|ref|ZP_01814243.1| AphB/LysR family protein [Vibrionales bacterium SWAT-3]
 gi|145963050|gb|EDK28319.1| AphB/LysR family protein [Vibrionales bacterium SWAT-3]
          Length = 291

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 144/289 (49%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S +  +L +T  EL +     SGK+RI    +L + ++     +F+  YPDI I+
Sbjct: 64  FFNECSPLLQRLSSTAEELTDVCKGASGKIRITAPSNLTKRMMMPMFSDFMTQYPDINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+++N+   +     D   R+  P + SSLI RK+  +     A+P YL     P   +E
Sbjct: 124 LMMNNQADQLDPTEWDVIFRV-GPQRDSSLIARKISEVKDILIASPEYLAKNAAPSHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+L+    LI   + + N    V+   G    + L V     + Q C  G GI L+P
Sbjct: 183 LANHSLLKGYPLIKWQLSNSNDETVVNSEKGRFNANALNV-----VRQACSEGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D +++   ++ +LV+++ED       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMIREYIEDGSLVQVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|145297998|ref|YP_001140839.1| LysR family transcriptional activator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850770|gb|ABO89091.1| LysR-family transcriptional activator [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 290

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 144/292 (49%), Gaps = 14/292 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + + +F  V   GSFT AAE L + +SS+S++IS LET++G++L  R  R L+LT 
Sbjct: 3   NVDLELMGLFATVVEQGSFTGAAEALGMPKSSVSQKISRLETQLGVRLLQRTTRRLSLTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG         +     +  + +      P+G++RI      G  LL   L EF  LYP+
Sbjct: 63  QGEIYVEQCQALLALARSANLAMARLRAAPAGRVRITAPEATGTLLLGRILAEFRALYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L +  +D+  +  D A+R   P++ SSLI R++  +  H  AAP YL     P 
Sbjct: 123 VVLELTLCDDQLDLVGEGYDLALR-AAPLKDSSLICRRIGQVPRHLVAAPGYLAAHGAPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + EL  H  +    L    +++  W     RP G    +C+  NS L++ +  +   GI
Sbjct: 182 QLSELGLHPCLVHSALPVWPLQEGGW-----RPQG----ACIS-NSLLALRELALHEGGI 231

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLP ++ +++     L +++ D   P    Y  YP        L++  +F+
Sbjct: 232 ALLPHHVCQEDLATGRLQKLLPDHPIPPNPFYLIYPSREHLAPALRSLMDFV 283


>gi|152984664|ref|YP_001345633.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959822|gb|ABR81847.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 355

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 140/296 (47%), Gaps = 23/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G +  
Sbjct: 50  MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 109

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + E   + ++P G+LR+ + + LGQ+ L   +  +  L+PD+ I+L 
Sbjct: 110 ERCRAILADIEVAEAEASGAHIRPCGRLRVQSLMGLGQHHLVPMIARYGALFPDVVIELT 169

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+ EL+
Sbjct: 170 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQRGVPRSVDELE 229

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           +H  +   D  P   E   WL   ++  GE  +S      VN    + Q    G GIALL
Sbjct: 230 QHVCLRLQD--PAYPE--GWLFVDEQ--GERTVSPQNTFMVNVAEVMAQAARAGLGIALL 283

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y+      N  L R+M        T+Y  YP            R ++  K R W
Sbjct: 284 PSYVAAPALRNGELRRVMPGHTMHERTIYALYPS-----------RRYLDAKIRTW 328


>gi|34496196|ref|NP_900411.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34102050|gb|AAQ58417.1| probable transcriptional regulator, LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 300

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 142/290 (48%), Gaps = 13/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ ++ F  VA  GSFT AA +L +S + +SRQ+  LE  +G +L YR  R L+LTE G 
Sbjct: 4   WEGMQEFTAVADCGSFTRAARRLGISIAQVSRQVGQLEERLGARLLYRTTRQLSLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++   L   +  + +    P G+L++   +  G + +   + +F+  YP +++
Sbjct: 64  LYLAHCRQLLESLADAEQAVSQLQAAPQGQLKLTAPLAYGHSHISPLVLDFMQRYPLLEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L N+  D+  +  D AIR+ + +  SSL+ RKL     H  A+P YL  C EP   Q
Sbjct: 124 SLDLSNQVKDLVHEGYDLAIRIGR-LTDSSLMARKLAQRRHHVCASPDYLARCGEPRRPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +H  +  G        +  W   V+      R+   ++ ++   + +  V G G+A 
Sbjct: 183 DLQRHQCLQIG--------NEGWHLQVNGRRQSVRVQGRMRCSTAAPLAEAAVRGMGLAQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPDY V    ++  LV ++ D   P   ++  YP   + + K++   +F+
Sbjct: 235 LPDYYVSAYLESGALVEVLADYAEPEEGIWALYPHNRQLSPKVRLLVDFL 284


>gi|269104162|ref|ZP_06156858.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268160802|gb|EEZ39299.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 300

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 136/285 (47%), Gaps = 8/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY +   GSF+ AAEQ  +++S IS++IS LE ++G++L YR  R LT TE G  
Sbjct: 5   DDLILFYHLIEHGSFSKAAEQAGITKSVISKRISKLEADLGVQLIYRTTRKLTPTEAGII 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +VYH ++     +       SG ++I      G+ +L   + EF   YPDI+I+
Sbjct: 65  FYSHARDVYHSVQNAMNAMSGLGESISGTIKITVPTISGEMILPQAISEFSQQYPDIKIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +DI     D AIR R  +  SSLI RKL+  H     +P YL+    P    E
Sbjct: 125 MDLDNRFVDIIDKGFDLAIRTR-ALPDSSLIARKLINAHWIICVSPAYLRKYGLPQHTSE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   WL   ++ I    +      N+  ++ Q  +LG GI  +
Sbjct: 184 LTSHNCLGYSYQETGASE---WLINDNQGIHTMTVKGNFTTNNASALRQAALLGQGIIYV 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P  +V     N +L  I          +Y  YP   +   K+K F
Sbjct: 241 PKILVSADLANGDLQEIFSGQAAKHLGIYAVYPYTKQQAIKIKLF 285


>gi|258621809|ref|ZP_05716840.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258586040|gb|EEW10758.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 326

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 147/289 (50%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  +++  +  ++I+R+I  LE  + ++L  RHAR LTLTE G +
Sbjct: 39  DDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 98

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++  S +  +L +   E+ +     SG++RI+   +L + ++      F+  YPDI I+
Sbjct: 99  FYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIE 158

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L++ N+  D+     D   R+  P + SSLI RK+  +     A+P YL N  +P   +E
Sbjct: 159 LMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPTYLANHPQPTHAEE 217

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H L+    L+   + +      V+   G  + S L V     +   C  G GI L+P
Sbjct: 218 LHQHQLLKGYPLLKWQLTNSQGETVVNTDRGRFQASALNV-----VRSACSEGLGITLMP 272

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D +++   D+ +LV+++ D  +    +Y  Y        K++ F +F+ 
Sbjct: 273 DVMLREYLDDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 321


>gi|329118191|ref|ZP_08246901.1| LysR family transcriptional regulator [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465612|gb|EGF11887.1| LysR family transcriptional regulator [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 299

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 144/292 (49%), Gaps = 19/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  V R GSFT AA++L +S +  S+ +S LE +V  KL  R++R L LTE G + H
Sbjct: 7   LRVFREVVRQGSFTRAADKLGISTAMASKHVSHLEKQVCAKLLQRNSRSLHLTEAGEQYH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  ++    L+T        +  P G+LRI   +     +  G L E+   +P + + LI
Sbjct: 67  RCCAQALETLDTAAERAAGGADTPQGRLRITMPMWFANPVFSGWLAEYRRRHPQVALDLI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+  D+  +  D A+R+       SLI R L  I  +  AAP YL     P + Q+  
Sbjct: 127 LDNRKADLIAEGIDLALRVSTDDLPPSLIVRPLSDIRFYLAAAPDYLAAHGTPATPQQAA 186

Query: 188 KHNLI--TFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + +  ++ D+    I +  + F  LA           + ++ ++ L + Q  + G GI
Sbjct: 187 RLDFVLPSYVDMDSVRITRGSDSFT-LAPA---------APVRADNTLMVRQMVLAGCGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP++ V+    N  L RI+ D    + T+Y  Y +    + K+++F +F+
Sbjct: 237 GYLPEWTVRRDFANGRLARILPDWHILTATLYAAYADRAFLSAKVRSFIDFL 288


>gi|209520272|ref|ZP_03269040.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499301|gb|EDZ99388.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 300

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 149/300 (49%), Gaps = 14/300 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F     + +FT AA +L LS+  +SR++  LE  +G++L  R+ R L +T+ G +
Sbjct: 4   DDMRIFVATVDAHNFTAAANRLSLSKQFVSRRVMALEEALGVQLLIRNTRKLAVTDLGQE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++E  +  +      P G LR++  +  G   L   +  FL  + D++  
Sbjct: 64  FYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMTHLSPLVAAFLREHRDVRFD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D AIR+   +  SSLI +KL+ + M A  +P YL+    P    +
Sbjct: 124 MELSDRAVDVIGEGFDMAIRI-GTLADSSLIAQKLIDVKMLACCSPGYLRRRGTPAVPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ + +G          +W  +VD  +    +   L+ N+   I    V G GI  L
Sbjct: 183 LAKHDCLLYGH-----GGAVSWEFSVDGALKSVEVRGPLRANNGDLIRDAAVAGLGIVRL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR--DW 297
           PD+IV D   N  LV ++E  +  +  VY  YP+  +++  ++AF  F+   LK R  DW
Sbjct: 238 PDFIVADALANGQLVPVLEAFLPAATGVYAVYPQHRQSSVTIRAFVEFLRKHLKKRLADW 297


>gi|90409751|ref|ZP_01217768.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90329104|gb|EAS45361.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 300

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 24/305 (7%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+F+   +D + VF  V  SGSFT AA     S S IS++I+ LE  +GI+L +R  R L
Sbjct: 1   MAFNAALFDGMVVFTEVVNSGSFTQAALNSGHSTSYISKEINKLEARLGIRLLHRTTRTL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT +G    +   ++    +  +  +     KP G+L+++  +  G + L+  L +F  
Sbjct: 61  SLTPEGELYFQQCQQLIEDAQVAENAITGQQEKPQGRLKVSCPVSFGLSNLRPILSQFTA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I ++L L+++ IDI  +  D AIR  K +  SSLI R++   +    A+P+YLK  
Sbjct: 121 QYPKIVLELDLNDRKIDIVAEGYDVAIRASKQLDDSSLISRRIRRSYAVVIASPNYLKKH 180

Query: 178 REPLSIQELDKHNLITFG--------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229
             P    EL +H  I++         DLI K  +      T+  PI   +   +  NSY+
Sbjct: 181 GTPKHPSELSQHKTISYSYIRQGNSWDLIDKDGQ------TIHIPI---KSQVVTNNSYM 231

Query: 230 SIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +  C+ G GI +LP + + D      LV +  D       ++  YP     + K++ F
Sbjct: 232 E-LALCMAGQGITILPHFHLHDEIEQGKLVALFSDFPRLPIDIFMVYPSRKHMSAKVRCF 290

Query: 287 RNFIF 291
            +FI 
Sbjct: 291 LDFIM 295


>gi|83309323|ref|YP_419587.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82944164|dbj|BAE49028.1| Transcriptional regulator [Magnetospirillum magneticum AMB-1]
          Length = 309

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 143/289 (49%), Gaps = 7/289 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +D +  F  VA +GSF+ AA +L LS+S ISRQ+S LE ++G++L +R  R L+ T
Sbjct: 1   MTPRFDTIIAFVRVAETGSFSEAARRLGLSKSMISRQVSALEADLGVRLLHRTTRSLSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +   L+   + +      P G+LR++  +  G   L   L  FL  YP
Sbjct: 61  EAGRAYLERCQRILADLDEANLLVSHLQAVPRGRLRVSAPLSFGIGHLSACLPGFLERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++++   ++ +D+  +  D A+R+ + +  SSLI R+L  +   A A+P YL+    P
Sbjct: 121 EIELEMGFTDRHVDLVEEGWDLAVRIGR-LADSSLIVRRLAPVRRMAAASPAYLERRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL  H+ +T G    +   ++ +     +P+          ++   +    + G G
Sbjct: 180 RRPEELSAHDCLTHGG---RVQSEWRFTGDDGKPVQVEVRGRFHADNGDVLRDMALAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + LLP + + D+     LV ++E  +    ++   YP     + K++AF
Sbjct: 237 VVLLPSFFLGDDIRAGRLVPLLEAYVPLDSSLNAVYPHGRHLSPKVRAF 285


>gi|126730859|ref|ZP_01746668.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
 gi|126708575|gb|EBA07632.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
          Length = 301

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 141/293 (48%), Gaps = 18/293 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L EFL  +PDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGEFLAEFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPSYFQKYGRPSRIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ + +     +    W  T   P GE R       L VN   S++  C+ G GIA
Sbjct: 185 NEHKLLHYSNQASGNV----WKLTA--PSGEKRQVRTAGWLTVNDGQSLLNACIAGLGIA 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            LP Y+  D      ++ED I P        VY  YP       K++AF +F+
Sbjct: 239 YLPSYLYHDAMEQ-GLVEDAI-PDLPMEMQGVYAVYPPGRFTQPKVRAFIDFL 289


>gi|23016520|ref|ZP_00056275.1| COG0583: Transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 309

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 143/289 (49%), Gaps = 7/289 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +D +  F  VA +GSF+ AA +L+LS+S ISRQ+S LE ++G++L +R  R L+ T
Sbjct: 1   MNPRFDTIIAFVRVAETGSFSEAARRLNLSKSMISRQVSALEADLGVRLLHRTTRSLSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +   L+   + +      P G+LR++  +  G   L  +L  FL  YP
Sbjct: 61  EAGRAYLERCQRILADLDEANLLVSHLQAVPRGRLRVSAPLSFGIGHLAESLPGFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++++   ++ +D+  +  D A+R+ + +  SSLI R+L  I   A A+P Y+     P
Sbjct: 121 EIELEMGFTDRHVDLVEEGWDLAVRIGR-LADSSLIVRRLAPIRRLAAASPDYVARRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +   EL  H+ +T G    +   ++ +     +PI          ++   +    + G G
Sbjct: 180 VHPSELSGHDCLTHGG---RVHSEWRFTGEDGKPIQVEVKGRFDSDNGDVLRDMAMAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I LLP + + D      LV ++E  +    ++   YP     + K++AF
Sbjct: 237 IVLLPSFFLGDGIRAGRLVPLLEKYVPLDSSLNVVYPHGRHLSPKVRAF 285


>gi|114800444|ref|YP_759844.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114740618|gb|ABI78743.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 326

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 144/296 (48%), Gaps = 22/296 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LRVF VVA   S + AA +L  S  +ISR+I  LET +G +LF R  RG+ LTE 
Sbjct: 6   LDWDTLRVFRVVAELSSMSGAAARLGESPPTISRKIDDLETTIGAQLFVRSTRGVELTEA 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  + R   ++     T + E         G++ I+T   +G   L   L EF  + P I
Sbjct: 66  GKVVLRYAHQMAEAANTLRDEAGAQRAPVEGRITISTGDGIGPYWLAPRLHEFQDMNPRI 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI++I+++   D++   AD AI   +P +S  L+  +L   H   +A+  Y +  + P S
Sbjct: 126 QIRMIVNDDPADVTNGDADIAIHFSEP-KSHELLTHRLGVQHYIGFASKDYFRERKPPES 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--------VNSYLSIMQY 234
           + E  K+          +C+   +++  V+R    P++S L+         NS  +++Q 
Sbjct: 185 LFEYYKY----------RCLMHSSYVNQVER--WAPKVSELRRMIDYAFVSNSGTALIQS 232

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           C  G G+A+LP +I   +  L+ +    I P    +  Y E  +   + + F ++I
Sbjct: 233 CAAGGGVAILPSFIAAMDNRLIPLDLPEIAP-IQFWVAYTERFRRRPEGQPFVDWI 287


>gi|84500460|ref|ZP_00998709.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84391413|gb|EAQ03745.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 301

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L EFL  +PDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGEFLAEFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+ + ++ S+L  RKL        AAP Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETSKRMIAAPTYFEKYGRPTKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ +       +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NEHKLLHYSSQASGNV----WKLTA--PSGEKRQVRTAGWLSVNDGQSLLNAAIAGLGIA 238

Query: 243 LLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  +     ++M+   ++ T +  +Y  YP       K++AF +F+
Sbjct: 239 YLPSFLYAEALETGQVMDAMPELPTETQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|13476459|ref|NP_108029.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14027220|dbj|BAB54174.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 306

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 144/290 (49%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA   SF  AA  L LS +++SR +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEGLAMFAKVAEERSFAAAARVLGLSVATVSRGVSRLEERLGARLFNRTSRRLALTDFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S +Y   E  +   +E S  P G +R+A  +  G   +   L +F  LYPD+ 
Sbjct: 66  HRLAERASRLYRDAEDAENAARELSASPRGLVRLAVPMSFGLRWVAPLLPDFFKLYPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + L +  +D+  +  D A+R+   +  SSL+ R+L +I     AAP YL     P + 
Sbjct: 126 IDMHLSDAVVDLIGEGFDAALRIAV-LPDSSLVARRLCSIAPFIVAAPSYLARHGRPSTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++LD H+ + +     + +  F+  A  D  +  P    L+V +  +++   + G  IA 
Sbjct: 185 RDLDAHHCLGYAYRPRQDVWHFS-NAAGDEEVVTPS-GPLRVTNSDALVPTVLAGIAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP++I  +   +  L  I+ D   P   +YF  P A     K++A   F+
Sbjct: 243 LPEFIASEYLADGRLQAILTDWTLPRGALYFVTPSARARPAKVEAVAGFM 292


>gi|148549368|ref|YP_001269470.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513426|gb|ABQ80286.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 298

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 147/295 (49%), Gaps = 15/295 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W+ +  F  VA SG FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TL+
Sbjct: 1   MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEDRLQTRLLYRSTRRVTLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP
Sbjct: 61  EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + L N  +D+  +  D AIRL + +  S L+  +L    M+  A+P YL++   P
Sbjct: 121 QLRVDVELSNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLEHYGRP 179

Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238
            S+ EL +HN L+   DL         W    D R I +      + NS  +++   + G
Sbjct: 180 HSLSELARHNCLVGSSDL---------WALQQDGREISQRVQGNWRCNSGQAVLDAALQG 230

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  LPDY V ++ N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 231 IGLCQLPDYYVLEHLNSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYL 285


>gi|90579813|ref|ZP_01235621.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90438698|gb|EAS63881.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 296

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 149/296 (50%), Gaps = 15/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W+ +  F  VA + SFT A+++L +S + +SRQ+S LE  +  KLFYR  R ++LTE+
Sbjct: 2   FLWEGVTEFVAVAETESFTAASKRLGISTAQVSRQVSALENRLNTKLFYRTTRKVSLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++   +V   LE  +  L      P G +++   +  G+  +   + +F+L YP++
Sbjct: 62  GNVYYQHCRQVMDGLEEAERALSNLRGTPQGLIKLTAPVTYGEKYIMPLVNDFMLQYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + + N+ +D+     D AIRL + + SSS++ ++L +  M+  A+P YL     P S
Sbjct: 122 EVVIDMTNRQVDLVEGSFDLAIRLGR-LTSSSMMAKRLTSRTMYVCASPDYLAKFGVPHS 180

Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           + EL  HN LI   D         +W           R+S  L  NS   +    + G G
Sbjct: 181 LSELRHHNCLIGNYD---------HWRFQESGKEKSVRVSGNLNCNSGYGLRDAVLKGIG 231

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA LPDY +    D+  +V I+ +   P   ++  YP     + K++   +F+  K
Sbjct: 232 IAQLPDYYIDKDLDSGAIVPILTNYQEPDEGIWALYPHNRHLSPKIRMLVDFLAEK 287


>gi|258626245|ref|ZP_05721092.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258581297|gb|EEW06199.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
          Length = 326

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 147/289 (50%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  +++  +  ++I+R+I  LE  + ++L  RHAR LTLTE G +
Sbjct: 39  DDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 98

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++  S +  +L +   E+ +     SG++RI+   +L + ++      F+  YPDI I+
Sbjct: 99  FYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIE 158

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L++ N+  D+     D   R+  P + SSLI RK+  +     A+P YL N  +P   +E
Sbjct: 159 LMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPTYLANHPQPTHAEE 217

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H L+    L+   + +      V+   G  + S L V     +   C  G GI L+P
Sbjct: 218 LHQHQLLKGYPLLKWQLTNSQGETVVNTDRGRFQASALNV-----VRSACSEGLGITLMP 272

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D +++   D+ +L++++ D  +    +Y  Y        K++ F +F+ 
Sbjct: 273 DVMLREYLDDGSLIQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 321


>gi|116695242|ref|YP_840818.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529741|emb|CAJ96088.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 310

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 140/287 (48%), Gaps = 8/287 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + +  F  V  +GS + AA +L+LS+S +S +++ LE  +G  L  R  R L+LTE 
Sbjct: 2   FKLEGVASFVAVVEAGSISEAARRLNLSKSVVSERLAELEKAMGANLLRRTTRRLSLTED 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      + + H++E    ++ E     +G LRI+  +  G+  L   +  FL  +P++
Sbjct: 62  GAAFLERATRILHEVEAAATDVAERRGTLAGSLRISAPVTFGRMHLGPAIYPFLARHPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L LD++ +D + D  D  +R   P++SS L+  +L   H    A+P YL     P +
Sbjct: 122 ELSLDLDDRRVDAATDSYDAVVR-HGPLESSRLVAWQLAPSHRLLVASPDYLAQMGAPAT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H  I + +   +   D+         I    +  L+VN+   +    + G GIA
Sbjct: 181 LAELQQHRGIFYAN---RGAADWRLHGPDGTEIARAAV-ALRVNNGDMMRDAAIAGVGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LLP +I  D      L  I   +     ++Y  +PE  + + +L+AF
Sbjct: 237 LLPTFIAGDAIRQGALAVIEVGLRAEPESIYIAHPEGRRVSARLRAF 283


>gi|28899928|ref|NP_799583.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838937|ref|ZP_01991604.1| transcriptional regulator [Vibrio parahaemolyticus AQ3810]
 gi|260363222|ref|ZP_05776091.1| transcriptional regulator [Vibrio parahaemolyticus K5030]
 gi|260880509|ref|ZP_05892864.1| transcriptional regulator [Vibrio parahaemolyticus AN-5034]
 gi|260898538|ref|ZP_05907034.1| transcriptional regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902235|ref|ZP_05910630.1| transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|28808211|dbj|BAC61416.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747608|gb|EDM58536.1| transcriptional regulator [Vibrio parahaemolyticus AQ3810]
 gi|308084979|gb|EFO34674.1| transcriptional regulator [Vibrio parahaemolyticus Peru-466]
 gi|308092319|gb|EFO42014.1| transcriptional regulator [Vibrio parahaemolyticus AN-5034]
 gi|308110467|gb|EFO48007.1| transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|308112030|gb|EFO49570.1| transcriptional regulator [Vibrio parahaemolyticus K5030]
 gi|328469915|gb|EGF40826.1| putative transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 289

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 151/291 (51%), Gaps = 13/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++L+E G
Sbjct: 3   NWEGVSEFVAVAETNSFTGAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G LR+   +  G+  L   L +FL  YP + 
Sbjct: 63  QLYYQQCKHLVEGLELAELAVTQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L N+ +D+     D AIRL + +Q SS+I ++L +   +  A+P YL+   EP ++
Sbjct: 123 LDLVLTNQKLDLIEQGVDVAIRLGR-LQDSSMIAKRLSSRQTYVCASPMYLERFGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL +H  +  G +      D+ W    ++     R+S  ++ NS  +++     G G+ 
Sbjct: 182 SELGRHQCLV-GSV------DY-WHFKENKRDKSLRVSGRIKCNSGFALVDAAKRGLGLV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY V+   D+  LV ++ D       ++  YP++   + K++   +F+
Sbjct: 234 QLPDYYVQEALDSGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFL 284


>gi|170742041|ref|YP_001770696.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196315|gb|ACA18262.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 301

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 135/258 (52%), Gaps = 8/258 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  VAR+G  T AA+++ +  S++SR++S LE+ +G +LF R   G  LT  
Sbjct: 4   FDWNDLRAFLAVARAGRLTVAAQRMGIDHSTLSRRLSALESALGTRLFGRRPSGFVLTSD 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +     T +  L E+S + SG +R+ T    G   L   L +     P +
Sbjct: 64  GERLLGDAERIESVAITLRARLDEASHQVSGTVRVGTPEAFGTTFLAPRLAQLFAAQPAL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L+ + +   +S   AD A+ L +P ++  L  RKLV   +  YAA  Y +      +
Sbjct: 124 EIELVANPRSFSLSKREADLAVTLTRP-ETGRLFARKLVDYALGLYAARSYAEAAEAIRT 182

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +L +H  + +  DL+     + N+L  V   I  P+    ++++ ++ M+    G+G+
Sbjct: 183 VDDLHRHRWVGYVEDLL--WTSELNYLPQVSSAI-HPQA---RISNVITQMEAVRGGAGL 236

Query: 242 ALLPDYIVKDNPNLVRIM 259
            +LP ++ + +P+L+ ++
Sbjct: 237 GILPHFLARGHPDLIAVL 254


>gi|167032182|ref|YP_001667413.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166858670|gb|ABY97077.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 298

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 145/295 (49%), Gaps = 15/295 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W+ +  F  VA SG FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TL+
Sbjct: 1   MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEERLQTRLLYRSTRRVTLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP
Sbjct: 61  EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + L N  +D+  +  D AIRL + +  S L+  +L    M+  A+P YL+    P
Sbjct: 121 QLRVDVELSNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLERYGRP 179

Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238
            S+ EL +HN L+   DL         W    D R I +      + NS  +++   + G
Sbjct: 180 HSLSELARHNCLVGSSDL---------WALQQDGREISQRVQGNWRCNSGQAVLDAALQG 230

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  LPDY V +   N  LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 231 IGLCQLPDYYVLEHLNNGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYL 285


>gi|89073120|ref|ZP_01159659.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89051073|gb|EAR56530.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 296

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 148/296 (50%), Gaps = 15/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W+ +  F  VA + SFT A+++L +S + +SRQ+S LE  +  KLFYR  R ++LTE+
Sbjct: 2   FLWEGVTEFVAVAETESFTAASKRLGISTAQVSRQVSALENRLNTKLFYRTTRKVSLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  L      P G +++   +  G+  +   + +F+L YP++
Sbjct: 62  GGVYYQHCRQVMDGLEEAERALSNLRGTPQGLIKLTAPVTYGEKYIMPLVNDFMLQYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + + N+ +D+     D AIRL + + SSS++ ++L +  M+  A+P YL     P S
Sbjct: 122 EVVIDMTNRQVDLVEGSFDLAIRLGR-LTSSSMMAKRLTSRTMYVCASPDYLARFGVPHS 180

Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           + EL  HN LI   D         +W           R+S  L  NS   +    + G G
Sbjct: 181 LSELRHHNCLIGNYD---------HWRFQESGKEKSVRVSGNLNCNSGYGLRDAVLKGIG 231

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA LPDY +    D+  +V I+ +   P   ++  YP     + K++   +F+  K
Sbjct: 232 IAQLPDYYIDKDLDSGAIVPILTNYQEPDEGIWALYPHNRHLSPKIRMLVDFLAEK 287


>gi|312882079|ref|ZP_07741829.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370215|gb|EFP97717.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 291

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 142/287 (49%), Gaps = 9/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++  S + ++L +   EL +     +GK+RI    +L + LL      F+  YPDI I+
Sbjct: 64  FYQECSPLLNRLTSATEELTDECRGAAGKIRIIAPSNLTKRLLMPIFNGFMAQYPDINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N    +     D   R+  P + SSLI RK+ ++     A+P YL  C  P   +E
Sbjct: 124 LTTSNHAEQLDPTEWDVIFRV-GPQRDSSLIARKIGSVADILVASPEYLSRCPAPKHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+L+    L+   + +    + V+   G  +   L V     +   C  G GI L+P
Sbjct: 183 LHQHSLLKGSPLLKWQLSNKTGESIVNNDKGRIQADTLDV-----VRLACSAGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           D ++K   D+ +LVR++ED       VY  Y        K++ F +F
Sbjct: 238 DVMLKEYTDDGSLVRVLEDWSANPREVYMLYNHKDHLPEKVRLFIDF 284


>gi|163801538|ref|ZP_02195437.1| putative transcriptional regulator [Vibrio sp. AND4]
 gi|159175027|gb|EDP59827.1| putative transcriptional regulator [Vibrio sp. AND4]
          Length = 289

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 147/292 (50%), Gaps = 15/292 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAETNSFTGAANKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G L++   +  G+  L   L +F+  YP + 
Sbjct: 63  QLYYQQCKHLVEGLELAELAVTQMQAEPKGILKVTAPVTYGEINLSPLLHQFIEKYPQVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ +D+     D AIRL + +Q SSLI ++L +  ++  A+P YL+   EP ++
Sbjct: 123 LDLNLTNQKLDLIEQGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPAYLERSGEPHTL 181

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
            EL  H  L+   D          W     +     R+S  ++ NS  +++     G G+
Sbjct: 182 SELSHHQCLVGTADY---------WHFKEQKREKSLRVSGRIKCNSGFALVDAAKRGLGL 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V+   DN +LV ++ D       ++  YP+    + K++   +F+
Sbjct: 233 VQLPDYYVQEALDNGDLVEVLTDYRDDREGIWALYPQNRNLSPKVRLLIDFL 284


>gi|254227712|ref|ZP_04921143.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|151939754|gb|EDN58581.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
          Length = 309

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 147/294 (50%), Gaps = 15/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  V   G+FT  A QL  S S++S+ I+ LE ++G++L +R  R L LTE G    
Sbjct: 7   IKLFVSVVDLGNFTAVANQLGQSPSTVSKAIARLEQDLGVRLVHRTTRQLQLTEAGFNYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV + L++++ +L +S   P G LR++  +  GQN +   + EF   YP++++ L 
Sbjct: 67  ETAREVINLLKSSEEQLHQSIASPFGTLRVSLPLSFGQNYITPLIPEFCERYPEVKLDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++   I     D AIR  + +  S+LI R+L  I M  +A+P Y+K    P S++ L+
Sbjct: 127 FSDEYTSILESGMDVAIRSGR-LNDSNLIARRLCPIDMGMFASPEYIKKFGRPQSVEALN 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242
           +H  I +        +    L T+  P+    +       + V++  ++     LG+GIA
Sbjct: 186 QHKWIMY------RYKQSGRLLTLTMPLDGQLVEFSPTHQVTVDNGYAMASLASLGAGIA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L+P Y+ +D      L+ + E   T    VY  YP       K+K F ++I  K
Sbjct: 240 LMPQYLARDLVQQGKLMLVSEPQRTDGQGVYIYYPSRKFVPAKVKVFIDYIIHK 293


>gi|262395758|ref|YP_003287611.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262339352|gb|ACY53146.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 330

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 147/294 (50%), Gaps = 15/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  V   G+FT  A QL  S S++S+ I+ LE ++G++L +R  R L LTE G    
Sbjct: 28  IKLFVSVVDLGNFTAVANQLGQSPSTVSKAIARLEQDLGVRLVHRTTRQLQLTEAGFNYL 87

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV + L++++ +L +S   P G LR++  +  GQN +   + EF   YP++++ L 
Sbjct: 88  ETAREVINLLKSSEEQLHQSIASPFGTLRVSLPLSFGQNYITPLIPEFCERYPEVKLDLS 147

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++   I     D AIR  + +  S+LI R+L  I M  +A+P Y+K    P S++ L+
Sbjct: 148 FSDEYTSILESGMDVAIRSGR-LNDSNLIARRLCPIDMGMFASPEYIKKFGRPQSVEALN 206

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242
           +H  I +        +    L T+  P+    +       + V++  ++     LG+GIA
Sbjct: 207 QHKWIMYR------YKQSGRLLTLTMPLDGQLVEFSPTHQVTVDNGYAMASLASLGAGIA 260

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L+P Y+ +D      L+ + E   T    VY  YP       K+K F ++I  K
Sbjct: 261 LMPQYLARDLVQQGKLMLVSEPQRTDGQGVYIYYPSRKFVPAKVKVFIDYIIHK 314


>gi|167625942|ref|YP_001676236.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167355964|gb|ABZ78577.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 291

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 146/277 (52%), Gaps = 13/277 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT A+++L +S + +SRQIS LET +  KLF+R  R +++TE 
Sbjct: 2   FNWEGVSEFVAVAEAESFTKASQRLGISTAQVSRQISALETRLASKLFHRTTRKVSVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +      P G L+I   +  G+  +   + +F++ YP++
Sbjct: 62  GRIYYQHCRQVLDGLEEAERAITNLQTTPRGLLKITAPVTYGEKTIAPLINDFVVQYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D+  +  D AIRL   ++ SS++ +KL +   +  A+P Y+     P S
Sbjct: 122 EVKLNLSNQKVDLIDEGYDLAIRLGH-LEDSSMMAKKLSSRTQYVCASPSYISTYGIPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + EL++HN +  G +      D+ W    +      R+   L  NS  +++   + G GI
Sbjct: 181 LSELEQHNCL-MGTM------DY-WRFQENGKTRNVRVRGTLSCNSGHALVDAAIKGIGI 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
             LPDY V    ++  LV ++E    P   ++  YP+
Sbjct: 233 VQLPDYYVDPFIEDGQLVTLLEQNRQPEEGIWALYPQ 269


>gi|323497510|ref|ZP_08102528.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323317593|gb|EGA70586.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 292

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 19/298 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++ D + L VF  V   GSFT AAE  +  +S++SR+I+ LET +G++L  R  R L LT
Sbjct: 2   LNCDLNDLMVFATVVEKGSFTAAAEAYNTPKSNVSRKITRLETHLGVRLLERSTRSLRLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +     +  +L      ++    KP G+LRI T++ +GQ+LL  +L  F L +P
Sbjct: 62  EVGQRYYEYCRRIKDELNAADSAVESMLEKPQGRLRICTSLGVGQSLLSEHLANFCLQHP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ L L N+ +D+  +  D A R+   +  SSL+ ++L  I++  YAAP       E 
Sbjct: 122 DIELDLALTNRRVDLIEEGFDLAFRM-GDLADSSLVAKRLCEINLKLYAAP---DRGFEA 177

Query: 181 LSIQELDKHNLITFGDLIPKCME-DFNWLATVDRP----IGEPRISCLQVNSYLSIMQYC 235
           LS       NL+    ++    E   +W  T          +P + C   + +  + +  
Sbjct: 178 LS----HPSNLLDQPLMLMSAKERSADWQLTSKHEEYHVSFKPSVRC---DDFSMLKRMA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V G GI  LPDY+ K+   N  L+ ++ D       +Y  YP     T K+++   ++
Sbjct: 231 VQGLGITELPDYMAKEFEINGKLINVLPDWSFKPVALYALYPSHRGATPKVRSLLEYL 288


>gi|299138082|ref|ZP_07031262.1| transcriptional regulator, LysR family [Acidobacterium sp.
           MP5ACTX8]
 gi|298600012|gb|EFI56170.1| transcriptional regulator, LysR family [Acidobacterium sp.
           MP5ACTX8]
          Length = 311

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 140/299 (46%), Gaps = 12/299 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MSFD    + +     V RSG F  AA  L++SQ  ISR ++ LE +VGI+L  R  R +
Sbjct: 1   MSFDDRLLNGVSALAAVVRSGGFAAAARSLNVSQPGISRAVARLEAQVGIRLLERTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT++G + +     +   LE     L E  V   G+LR+       Q +L   L  FL 
Sbjct: 61  SLTDEGRRFYETIGPIVSALEDATSALAEGKVTVRGRLRVNMDPYFSQLILGPQLSGFLK 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP++++ L+      D+  D  D  IR  +P + S+L+ R+L+   +   A+P YLK  
Sbjct: 121 AYPELKVDLVTREGLGDLISDGYDLGIRFGEP-RPSTLVARRLLDTRVLTVASPGYLKKH 179

Query: 178 REPLSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQY 234
             P   Q+L  ++H +I F D  P+    F W+    R  I     S L ++   ++   
Sbjct: 180 GHPTDPQQLVAERHRMIDFRD--PETGRSFEWVFRKGRKEIKVETESQLMLSDVATMHAV 237

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           CV G GIA + +  V     +  LV +  D     F +Y  YP       K +AF  F+
Sbjct: 238 CVAGYGIAQVLELGVDAHLSSGRLVNLFPDWEDERFPLYAYYPSRQYLAPKTRAFLEFL 296


>gi|221640399|ref|YP_002526661.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|221161180|gb|ACM02160.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
          Length = 301

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 141/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F +V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFAMVVDQGGFTDAARKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V          +      PSG LR++   D G  LL   L EFLL YPDI + +
Sbjct: 66  YDRARRVLTDAGEADALVTSMQTAPSGHLRLSVATDFGVALLTPILAEFLLDYPDITVTM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+   ++ SSL  RKL        A+P YL+    P+ I +L
Sbjct: 126 VLNNRSVELISEGFDMAIRV-GDLEDSSLRARKLTETTRRMIASPGYLQRHGRPMKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
             H L+          +    +  +  P GEPR       L VN   S+++  V G GIA
Sbjct: 185 TDHRLLY------HSTQAHGNVWRLLSPSGEPRQVRAPGFLTVNDGQSLLKAAVSGLGIA 238

Query: 243 LLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+++  +     LV  ++ D+   +  ++  YP       K++AF +F+
Sbjct: 239 HLPEFLFAEAMRAGLVEEVLPDLPVETLGIHAIYPAGRFTQPKVRAFIDFL 289


>gi|59711256|ref|YP_204032.1| LysR family DNA-binding transcriptional regulator [Vibrio fischeri
           ES114]
 gi|59479357|gb|AAW85144.1| predicted DNA-binding transcriptional regulator, LysR family
           [Vibrio fischeri ES114]
          Length = 290

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 149/291 (51%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ +  F  VA + SFT AA  L  S + ISR+++ LE  + IKL  R  R +++TE 
Sbjct: 2   IDWEGVTEFVAVAEAQSFTGAARALDTSVAQISRKVAALEDRLSIKLLIRTTRKVSVTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +   L+     + E +  P G+L+I +++  G+ L+   L +F+L+YP +
Sbjct: 62  GQTYYQHCRHLVEGLKQADRAITELNATPQGRLKITSSVTYGEQLIAPLLSDFMLMYPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+L N+ +D+     D AIRL + +  S+++ ++L +  +   A+P Y++   EP +
Sbjct: 122 ELELVLSNQTLDLVEQDFDLAIRLGR-LTDSTMMAKRLSSRQVRVCASPSYIEKHGEPHT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +HN +     I + +E+    +   R  G   + C   NS  ++    + G GI 
Sbjct: 181 LSELSQHNCLVGSLPIWRFIENKKEKSV--RVKGS--VHC---NSGAALTNAALKGLGIV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPD+ V+   D   LV I+     P   ++  YP     + K++    F+
Sbjct: 234 QLPDFYVQESMDKGELVEILVPYREPKEGIWAVYPNNRHLSTKVRLLVEFL 284


>gi|313500217|gb|ADR61583.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 298

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 146/295 (49%), Gaps = 15/295 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W+ +  F  VA SG FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TL+
Sbjct: 1   MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEDRLQTRLLYRSTRRVTLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP
Sbjct: 61  EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + L N  +D+  +  D AIRL + +  S L+  +L    M+  A+P YL+    P
Sbjct: 121 QLRVDVELSNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLERYGRP 179

Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238
            S+ EL +HN L+   DL         W    D R I +      + NS  +++   + G
Sbjct: 180 HSLSELARHNCLVGSSDL---------WALQQDGREISQRVQGNWRCNSGQAVLDAALQG 230

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  LPDY V ++ N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 231 IGLCQLPDYYVLEHLNSGSLVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYL 285


>gi|293392721|ref|ZP_06637040.1| contact-regulated protein A [Serratia odorifera DSM 4582]
 gi|291424838|gb|EFE98048.1| contact-regulated protein A [Serratia odorifera DSM 4582]
          Length = 298

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 146/300 (48%), Gaps = 21/300 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V  SGSF+ AAE+L  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVESGSFSRAAERLEQANSVVSRTVKKLENKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R   +V + +   +  L ES  +P G LR+        ++L     EF  LYP
Sbjct: 61  QEGENYFRQVQKVLNDMAAAENALMESRQRPQGLLRVDAATPFVLHVLAPMAAEFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR+ + +  SSL  RKL+T +    A+P YL+    P
Sbjct: 121 EMSLSLVSSETFINLIERKVDIAIRIGE-LTDSSLKARKLMTSYRQVLASPAYLRQYGTP 179

Query: 181 LSIQELDKHNLITFGDLIP------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            +++EL +H  I F DL         C +   W AT            L  NS  +    
Sbjct: 180 QTVEELAQHCCIGFNDLPALNRWPLACADGRQWEAT----------PALTSNSGETHRHL 229

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           C+ G+GIA L D+++ ++    +LV I++    P +  +   Y      + +L++F +F+
Sbjct: 230 CLHGNGIACLSDFMIGEDVKRGDLVPILQQHTLPLAMPINAVYYSDSAVSNRLRSFIDFV 289


>gi|162455419|ref|YP_001617786.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161166001|emb|CAN97306.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 327

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 148/309 (47%), Gaps = 21/309 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + L VF  VA + SFT AA +L + +S++SR ++ LE  +G++L  R  R + LT 
Sbjct: 24  TMDLNHLSVFAAVAETASFTEAARRLGVPKSTVSRGVASLEASLGVRLLQRTTRSVALTT 83

Query: 62  QGSKL-HRVTSEVYHKLETTQIE-LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            G  L  R+ S +  K  T  IE L E   +PSG LR+  T D    +L   L  F   Y
Sbjct: 84  AGHALVDRLGSRL--KALTEAIEGLPELEDEPSGTLRLTATADFATEVLAEILAAFCRRY 141

Query: 120 PDIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P I +++ L  + +D+  +  D A R L K  + S+L+ RK+  +H+  YA+P YL    
Sbjct: 142 PRITVEMHLSTQPVDLVKEGYDAAFRFLTKQPRDSTLVARKVGELHLQFYASPAYLAARG 201

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++++L  H+ +      P   ++      V R     RI  L VN      +    G
Sbjct: 202 TPRTLEDLAGHDGVALIKTSPFGRDE------VSRAGARLRIRWL-VNDGFFAREVVRNG 254

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF---- 291
            GI LLP ++V+ +     LVR++     P+  V+  +P       K  A R+ +     
Sbjct: 255 GGIGLLPTFLVQQDVLAGGLVRVLPRWTAPTGGVFLVFPSGQHLPRKTVALRDHVVEALR 314

Query: 292 --LKARDWK 298
             LKAR  +
Sbjct: 315 MQLKARAGR 323


>gi|260777406|ref|ZP_05886300.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607072|gb|EEX33346.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 308

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 146/292 (50%), Gaps = 13/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + VF  V  SGSF+ AAE+LH+++S++S++I+ LE E+GI+L  R  R L+LTE G 
Sbjct: 4   YSSIPVFVAVVESGSFSTAAEKLHITKSAVSKRINQLEDELGIRLLNRTTRKLSLTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +   ++     +     + E   KP+GKL+I   +  G   +   + EFL LYPD++I
Sbjct: 64  RYYDYVAQSLSLAQQGIDAVTELQGKPTGKLKITAPMSFGVLHVAPLVAEFLALYPDLEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D+  D  D  IR+   +  S+L+ ++L T      A+  YL    EP    
Sbjct: 124 DLQLEDQMVDLVQDGFDLGIRIGH-LPLSNLVAKRLATCRSILCASQSYLDEHGEPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           +L  HN + +            W  T + P G   +     L VN+  +I +  + G GI
Sbjct: 183 DLSLHNCLRYAYF----RGGSEW--TFESPTGPVSVVPKGKLVVNNSEAIRRALLEGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP +IV  +     L  IM     P  +VY  +PE      K++ F +FI
Sbjct: 237 GQLPTFIVAKDIAAGKLKPIMTAYTLPPHSVYAVFPERKHLPLKVRVFVDFI 288


>gi|90578240|ref|ZP_01234051.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90441326|gb|EAS66506.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 289

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 141/289 (48%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  VA   SF  AAE   +  S++SR+IS LE  +G++L +R  R + LTE G  
Sbjct: 5   DDMALFVEVANVMSFRQAAEITGVPNSTLSRRISALEKAIGLRLLHRTTRKIELTEAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  + +    +L + +  PSG +R++  ID   + +   L EF   YP+I+++
Sbjct: 65  YYERCRRIVEEAKLAHQQLSDIAENPSGTVRVSAPIDFATHFIAPLLPEFSKQYPEIELE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ +D++ +Y D AIR  +  +SSSLI RKL   H + Y +P YL    EP    E
Sbjct: 125 FDLSSRRMDMTSEYFDVAIRAGES-ESSSLIARKLANFHHYVYGSPAYLAQYGEPQLPDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +H   +        ++  +W    +    + ++ S L VNS   I Q  VL  G+ LL
Sbjct: 184 LTQHQCFSI-------VKSAHWAMHSEDKSADIKVNSKLFVNSIGMIKQLIVLNMGLGLL 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  ++ D      L RI+ D  +    +Y    E      K + F NFI
Sbjct: 237 PQEMITDELAQGTLQRILPDWQSSPVPIY-AITETRLLPAKTRCFINFI 284


>gi|77464506|ref|YP_354010.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77388924|gb|ABA80109.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
          Length = 313

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 141/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F +V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 18  EMEAFAMVVDQGGFTDAARKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 77

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V          +      PSG LR++   D G  LL   L EFLL YPDI + +
Sbjct: 78  YDRARRVLTDAGEADALVTSMQTAPSGHLRLSVATDFGVALLAPILAEFLLDYPDITVTM 137

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+   ++ SSL  RKL        A+P YL+    P+ I +L
Sbjct: 138 VLNNRSVELISEGFDMAIRV-GDLEDSSLRARKLTETTRRMIASPGYLQRHGRPMKIDDL 196

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
             H L+          +    +  +  P GEPR       L VN   S+++  V G GIA
Sbjct: 197 TDHRLLY------HSTQAHGNVWRLLSPSGEPRQVRAPGFLTVNDGHSLLKAAVSGLGIA 250

Query: 243 LLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+++  +     LV  ++ D+   +  ++  YP       K++AF +F+
Sbjct: 251 HLPEFLFAEAMRAGLVEEVLPDLPVETLGIHAIYPAGRFTQPKVRAFIDFL 301


>gi|88800479|ref|ZP_01116043.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
 gi|88776809|gb|EAR08020.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
          Length = 301

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 145/292 (49%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V ++ +FT+AA QL L+ S++S+QIS LE  +G++L  R  R ++ TE G  
Sbjct: 5   DSLIIFTTVVKANNFTNAAHQLGLTPSAVSKQISLLEDRLGVRLLNRTTRSVSPTEAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S +   LE  +  +++    P G L+I+ T   G+ +L     +FL  YPD+   
Sbjct: 65  FFNRCSRLLEDLEEAEHMVKDLETSPRGTLKISATPTFGRAMLMKIFAQFLEQYPDVNFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +K +D+  +  D AI L   +Q S L+ R +    +    +  YL    +P ++ E
Sbjct: 125 LTLADKGLDLVREGIDLAIHL-GSLQDSRLVARPVARQKVILVGSKEYLAEHGQPEALNE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGI 241
           L  H ++    +      DF     + R I E  +S       VN   ++ +  + G G+
Sbjct: 184 LVNHFILMVSGI------DFAEPRWIKRFIKEAGLSNKDRRFTVNDLDTLCEAALNGMGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP Y+++   D+  LV I+ D+  P  T++  YPE    + K +AF +F+
Sbjct: 238 AALPVYMIREHLDSGKLVHILPDIHFPVRTIHVVYPENRYLSAKSRAFVDFM 289


>gi|197335382|ref|YP_002155407.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197316872|gb|ACH66319.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 290

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 149/291 (51%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ +  F  VA + SFT AA  L  S + ISR+++ LE  + IKL  R  R +++TE 
Sbjct: 2   IDWEGVTEFVAVAEAQSFTGAARALDTSVAQISRKVAALEDRLSIKLLIRTTRKVSVTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +   L+     + E +  P G+L+I +++  G+ L+   L +F+L+YP +
Sbjct: 62  GQTYYQHCRHLVEGLKQADRAITELNATPQGRLKITSSVTYGEQLIAPLLSDFMLMYPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+L N+ +D+     D AIRL + +  S+++ ++L +  +   A+P Y++   EP +
Sbjct: 122 ELELVLSNQTLDLVEQDFDLAIRLGR-LTDSTMMAKRLSSRQVRVCASPGYIEKHGEPHT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +HN +     I + +E+    +   R  G   + C   NS  ++    + G GI 
Sbjct: 181 LSELSQHNCLVGSLPIWRFIENKKEKSV--RVKGS--VHC---NSGAALTNAALKGLGIV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPD+ V+   D   LV I+     P   ++  YP     + K++    F+
Sbjct: 234 QLPDFYVQESMDKGELVEILVPYREPKEGIWAVYPNNRHLSTKVRLLVEFL 284


>gi|229523164|ref|ZP_04412571.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229339527|gb|EEO04542.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 291

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 148/289 (51%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  +++  +  ++I+R+I  LE  + ++L  RHAR LTLTE G +
Sbjct: 4   DDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++  S +  +L +   E+ +     SG++RI+   +L + ++      F+  YPDI I+
Sbjct: 64  FYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L++ N+  D+     D   R+  P + SSLI RK+  +     A+P YL + ++P   +E
Sbjct: 124 LMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPQYLSSHQQPTHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H L+    L+   + +      V+   G  + S L V     +   C  G GI L+P
Sbjct: 183 LHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNV-----VRSACSEGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D +++   ++ +LV+++ D  +    +Y  Y        K++ F +F+ 
Sbjct: 238 DVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 286


>gi|126463346|ref|YP_001044460.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105010|gb|ABN77688.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 301

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 141/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F +V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFAMVVDQGGFTDAARKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V          +      PSG LR++   D G  LL   L EFLL YPDI + +
Sbjct: 66  YDRARRVLTDAGEADALVTSMQTAPSGHLRLSVAADFGVALLTPILAEFLLDYPDITVTM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+   ++ SSL  RKL        A+P YL+    P+ I +L
Sbjct: 126 VLNNRSVELISEGFDMAIRV-GDLEDSSLRARKLTETTRRMIASPGYLQRHGRPMKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
             H L+          +    +  +  P GEPR       L VN   S+++  V G GIA
Sbjct: 185 TDHRLLY------HSTQAHGNVWRLLSPSGEPRQVRAPGFLTVNDGHSLLKAAVSGLGIA 238

Query: 243 LLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+++  +     LV  ++ D+   +  ++  YP       K++AF +F+
Sbjct: 239 HLPEFLFAEAMRAGLVEEVLPDLPVETLGIHAIYPAGRFTQPKVRAFIDFL 289


>gi|163858793|ref|YP_001633091.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262521|emb|CAP44824.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 304

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 139/289 (48%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  V + GSF  AA QL LS +++S+ I  LE  +G +L  R  R ++LTE GS  +
Sbjct: 7   LRVFRNVVQLGSFAQAARQLRLSPAAVSKNIGELEAHLGARLLQRTTRRMSLTEAGSLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +   L+     L      PSG LR++  + L  + L   +  FL  YPD+ + L 
Sbjct: 67  EQISRILDDLDEAGRSLAPLQTGPSGVLRVSAPMSLTLSRLSAAIPAFLQAYPDLSLDLH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +DI  +  D AIR    ++ SSL+ R L  +      AP Y +   EP + Q L 
Sbjct: 127 LEDRRVDIIQEGYDLAIRGTDQLEDSSLVARPLTVLPHVLCGAPAYFQRHGEPDTPQALR 186

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            HN + F   +    +++ +     TV  P+        QVNS L++      G G++L+
Sbjct: 187 GHNCLRF--TLSGHADEWTFRRHGQTVRVPVR----GRYQVNSSLAVRDALRAGFGLSLV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V+D+     L  ++ D       +Y  YP       K++AF +F+
Sbjct: 241 PRTYVEDDLAQGRLRAVLNDWAMVDTYLYAVYPSRRHVAAKVRAFADFV 289


>gi|89094200|ref|ZP_01167142.1| putative transcriptional regulator, LysR family protein
           [Oceanospirillum sp. MED92]
 gi|89081455|gb|EAR60685.1| putative transcriptional regulator, LysR family protein
           [Oceanospirillum sp. MED92]
          Length = 301

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 143/287 (49%), Gaps = 8/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D + +F  V +  SF   AEQ  ++ S +S+ IS LE  +G++L  R  R L LTE G
Sbjct: 3   NLDDMLLFAQVVKLKSFRAVAEQRGVASSVVSKHISRLEKHLGVQLLIRTTRKLNLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R   ++   +   +  + + + +P G LRIA  +  GQ  L   + E+L LYPD++
Sbjct: 63  REFFRHCQQLESSVALAERAVSQHAEQPQGLLRIAAPMISGQYFLPAVIDEYLRLYPDMR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+ +   D+     D AIR    +  SSL  R+LV    +AYA+P YL+    P +I
Sbjct: 123 VEMIIKDSFQDLVSSGFDLAIRT-GTLSDSSLRARRLVESRWYAYASPDYLQTHGTPSAI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  HN + F        E   W  T     G+ ++    + +S +++ +  V G GIA
Sbjct: 182 DDLALHNCLQFSYQETGPHE---WPVTTGGKPGKVKVQGRFEASSLVTLREASVSGMGIA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P Y+V++      LV +++D I     +Y  YP       K+ AF
Sbjct: 239 FMPVYLVREQVKQGQLVAVLQDHIYRDVGIYAIYPNIRYVPRKISAF 285


>gi|254426809|ref|ZP_05040516.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
 gi|196192978|gb|EDX87937.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
          Length = 290

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 142/295 (48%), Gaps = 23/295 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD++  F  V R GSF  AA  L +S S +SR ++ LET++G +L YR  R LTLT+ G+
Sbjct: 4   WDRIEAFVEVVRLGSFARAARDLGVSSSHVSRLVARLETQLGTQLLYRTTRRLTLTDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++   +     + +   +P+G LR+      G+  +   + +FL  +P + +
Sbjct: 64  VYFDHCCQLFDGFQEALNAISDFQQQPTGVLRLTCATTFGERFIAPLVNDFLACHPQLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL   N+ +DI  +  D AIR    +  SSLI R+L     +   +P Y +    P ++ 
Sbjct: 124 QLDFTNRRVDIVDEGFDVAIRT-GALPDSSLIARRLCPRREYVVGSPAYFERHARPHTLG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
           EL  HN          C++  +  W   VD   G+ R S +Q     NS ++++     G
Sbjct: 183 ELGGHN----------CLQGSSEQWAFDVD---GQHRHSKVQGNWKGNSGVALLDAARKG 229

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  LPDY V D+    +LV +++        V+  YP     + K++ F +F+
Sbjct: 230 IGLVQLPDYYVADDLARGDLVSVLDQYACTHTAVWVVYPRHRHLSPKVRQFVDFL 284


>gi|156978116|ref|YP_001449022.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156529710|gb|ABU74795.1| hypothetical protein VIBHAR_06921 [Vibrio harveyi ATCC BAA-1116]
          Length = 289

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 145/292 (49%), Gaps = 15/292 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAETNSFTGAANKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G L++   +  G+  L   L +F+  YP + 
Sbjct: 63  QLYYQQCKNLVEGLELAELAVTQMQAEPKGLLKVTAPVTYGEMNLAPLLHQFIEKYPQVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ +D+     D AIRL + +Q SSLI ++L +  ++  A+P YL    EP ++
Sbjct: 123 LDLNLTNQKLDLIEQGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPAYLDRSGEPHTL 181

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
            EL  H  L+   D          W     +     R+S  ++ NS  +++     G G+
Sbjct: 182 SELSHHQCLVGTADY---------WHFKEQKREKSLRVSGRIKCNSGFALVDAAKRGLGL 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V+   DN  LV ++ D       ++  YP+    + K++   +F+
Sbjct: 233 VQLPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQNRNLSPKVRLLIDFL 284


>gi|153832732|ref|ZP_01985399.1| transcriptional regulator [Vibrio harveyi HY01]
 gi|148871077|gb|EDL69961.1| transcriptional regulator [Vibrio harveyi HY01]
          Length = 289

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 145/292 (49%), Gaps = 15/292 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAETNSFTGAANKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G L++   +  G+  L   L  F+  YP + 
Sbjct: 63  QLYYQQCKHLVEGLELAELAVTQMQAEPKGLLKVTAPVTYGEMNLAPLLHRFIEKYPQVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N+ +D+     D AIRL + +Q SSLI ++L +  ++  A+P YL    EP ++
Sbjct: 123 LELNLTNQKLDLIEQGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPAYLDRSGEPHTL 181

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
            EL  H  L+   D          W     +     R+S  ++ NS  +++     G G+
Sbjct: 182 SELSHHQCLVGTADY---------WHFKEQKREKSLRVSGRIKCNSGFALVDAAKRGLGL 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V+   DN  LV ++ D       ++  YP+    + K++   +F+
Sbjct: 233 VQLPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQNRNLSPKVRLLIDFL 284


>gi|58039186|ref|YP_191150.1| LysR family transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58001600|gb|AAW60494.1| Transcriptional regluator LysR family [Gluconobacter oxydans 621H]
          Length = 305

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 137/288 (47%), Gaps = 5/288 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F  VA SGSFTHAA+ L + +S++S  +  LE  +G +L  R  R + LT+ G  
Sbjct: 5   DLLRIFIRVAESGSFTHAADTLQMPRSTVSTAVQELENRLGTRLLARTTRSVRLTDDGRM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    +    E  +   +  S +  G +++     +G+ ++   L EFL  YP + ++
Sbjct: 65  FQQTALRLLGDFEDAENRFRLHSSQTRGHVKVNLPSRIGRLIVAPALPEFLDRYPGLDVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ I+++ D  DC +R+  P+Q SSLI RKL  + +   A+P YL     P +  +
Sbjct: 125 LGMTDRSINLAEDGTDCVLRV-GPLQDSSLIGRKLGLLPVFNVASPSYLAQHGTPQNPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + +       +ED+ W     R    P    + VNS    +  C+ G G+A LP
Sbjct: 184 LSAHQAVLYASPTTGRIEDWEW-EHDGREDSRPVRGRVTVNSAEGAVACCLAGLGVAQLP 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y V  +     LV I+         +   YP     + +L+ F  ++
Sbjct: 243 AYDVLPHIRRGELVDILPQWRAAPLPMTLLYPHRTHLSRRLEVFTEWL 290


>gi|259417823|ref|ZP_05741742.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259346729|gb|EEW58543.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 301

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 142/292 (48%), Gaps = 16/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L EFL  +PDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQTAPSGLLRISVATDFGVNHLSPVLSEFLRDFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ SSL  RKL        A+P YL+    P  I +L
Sbjct: 126 VLNNRFVELISEGFDMALRIGE-LEDSSLRARKLTETTKRMVASPEYLEKYGRPQKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ + +     +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NEHKLLHYSNQSSGNV----WKLTA--PSGEKRQVRSTGWLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKDNPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP Y+  +      ++EDV+      +  +Y  YP       K++AF +F+
Sbjct: 239 YLPSYLYAE-AKAEGLVEDVMPQLPVETLGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|24371967|ref|NP_716009.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24345816|gb|AAN53454.1|AE015485_3 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 295

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 144/295 (48%), Gaps = 13/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A ++L LS+S+IS++IS LE  +GI+L  R  R L+LT+ G+
Sbjct: 4   FSALPIFVTVVECGSFSLAGQKLGLSKSAISKRISQLEQHLGIQLLQRTTRSLSLTDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +            +     + E    P G LRI+  +  G+  +   + EFL  YPDIQ+
Sbjct: 64  RYFEYIRPAVQLTQEGLDAISELQQTPRGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P++  
Sbjct: 124 QMQMDDKITDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPAYLTQHGLPMTPC 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           EL +HN + +        +   W  +   P G  R+      QVN+  +I Q C+ G GI
Sbjct: 183 ELTQHNCLFYSYF----QDGVEW--SFHSPDGMQRVQPKGNYQVNNSDAINQACLDGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP +IV+ +    +L  ++ D   P   +Y  YP+      K+     F+  K
Sbjct: 237 ANLPRFIVEPDLQTGHLQALLTDYPLPEHGIYAVYPQRKYQPTKVTVLIEFLMAK 291


>gi|92113336|ref|YP_573264.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796426|gb|ABE58565.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 298

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 132/246 (53%), Gaps = 6/246 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V R+GSFT AA +L +S+S  S++++ LE E+ + L  R  R L LTE G  
Sbjct: 5   DALRVFVEVVRAGSFTAAARRLSISKSLASKRVAALEDELSVNLLNRSTRSLRLTEAGQI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  +L++ + ++Q  + +P G+L+++  +  G   L      F+  YPD+ ++
Sbjct: 65  YYEHGLRVIEELQSAEAQVQSVTSQPRGQLKVSAQVSFGFMYLAAPTTAFMRRYPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++  +   D  D AIR+  P+  SSL+ R L  +    YAAP YL     PL  ++
Sbjct: 125 ILLEDQRFEPIDDSVDLAIRM-GPLPPSSLVSRPLCKVVYGLYAAPDYLARAGRPLHPRD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +  ++ + +G+         +W  +++ +P+     S L +N+ L +++    G G+A L
Sbjct: 184 IADYDTVFYGNYDLGA----HWRFSLNGQPLDIEPNSRLVINNLLGVVEAAKSGFGLAYL 239

Query: 245 PDYIVK 250
           P +  +
Sbjct: 240 PTFAAR 245


>gi|163855507|ref|YP_001629805.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163259235|emb|CAP41535.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 300

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 123/248 (49%), Gaps = 8/248 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D D+LR   +F  VAR G+F  A+E L +  S++SR+IS  E  + +KLF+R  R  
Sbjct: 1   MNRDIDRLRDMALFAEVAREGTFVKASETLGVPVSTLSRRISEFEKGINVKLFHRSTRKT 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLTE G++ ++   ++  ++     EL   +  P G+LR++   D G  L   +  E   
Sbjct: 61  TLTEVGARYYQQIDDILQQVRHVNDELDSETSTPGGQLRVSMPADFGAYLADVHFDELRA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I  +  L + ++D+ +   D +I +  P  +S LI R++ T+H H Y+AP YL+  
Sbjct: 121 AYPSITYEFFLTSDEVDLMVGRYDVSILIGDPPSASRLIARRIGTVHRHLYSAPEYLERH 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCV 236
           R P   ++L+ H  +      P       WL      +     S  L +NS   I Q  +
Sbjct: 181 RVPAKPEQLNSHTCL----FPPPVESGGGWLMRNGPEVIHVNPSPLLMINSQAVIRQLVM 236

Query: 237 LGSGIALL 244
            G GI  L
Sbjct: 237 HGIGIGQL 244


>gi|114327592|ref|YP_744748.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315766|gb|ABI61826.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 331

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 144/290 (49%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  R+F  V    SFT AA+ L + +SS+S  +  LE  VG +L +R  R +  T+ G+ 
Sbjct: 35  DLFRIFSRVVECASFTRAADTLGMPRSSVSAAVQELEGRVGARLLHRTTRKVAPTQDGAA 94

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    V   +E T+   ++ + +PSG+LRI     +G+ ++   L EFL LYP I I 
Sbjct: 95  FYQRCQRVIADVEDTENLFRQMAAQPSGRLRIDVPGRIGRLIIAPALPEFLDLYPQINID 154

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  D  DC +R+  P+  S LI R +  + +   A+P YL     P ++ +
Sbjct: 155 LGVTDRAVNLVEDSLDCVLRV-GPLSDSGLIARPIGRLALINVASPAYLARHGMPQALDD 213

Query: 186 LDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  + +       +ED+ W+   T+       R++   VNS  + +  C+ G G+  
Sbjct: 214 LGQHWAVNYASPSSGRVEDWEWMEDGTLHTLPMRGRVT---VNSAEAYIACCLAGLGLIQ 270

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V+   D   L+ IM +       +   YP     + +L+ F +++
Sbjct: 271 IPAYDVRSHLDTGELIEIMPEYRADPMPMTLLYPHRQHLSRRLQIFADWL 320


>gi|262165288|ref|ZP_06033025.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|262025004|gb|EEY43672.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 326

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 147/289 (50%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  +++  +  ++I+R+I  LE  + ++L  RHAR LTLTE G +
Sbjct: 39  DDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 98

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++  S +  +L +   E+ +     SG++RI+   +L + ++      F+  YPDI I+
Sbjct: 99  FYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIE 158

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L++ N+  D+     D   R+  P + SSLI RK+  +     A+P YL N  +P   +E
Sbjct: 159 LMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPTYLANHPQPTHAEE 217

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H L+    L+   + +      V+   G  + S L V     +   C  G GI L+P
Sbjct: 218 LHQHQLLKGYPLLKWQLTNSQGETVVNTDRGRFQASALNV-----VRSACSEGLGITLMP 272

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++++   + +LV+++ D  +    +Y  Y        K++ F +F+ 
Sbjct: 273 DVMLREYLGDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 321


>gi|163737129|ref|ZP_02144547.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|163740458|ref|ZP_02147852.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161386316|gb|EDQ10691.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161389733|gb|EDQ14084.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 308

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 142/293 (48%), Gaps = 18/293 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 13  EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L +FL  +PDI + +
Sbjct: 73  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPDITVNM 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ SSL  RKL        A+P YL+    P  I +L
Sbjct: 133 VLNNRYVELISEGFDMALRIGE-LEDSSLRARKLTETTKRMIASPAYLEKFGRPQKIDDL 191

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     M    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 192 NMHKLLHYSNQSSGSM----WKITA--PSGEKRQVRTSGWLSVNDGQSLLNAAISGLGIA 245

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            LP Y+  D      ++EDV+ PS       +Y  YP       K++AF +F+
Sbjct: 246 YLPSYLYSD-AMAEGLVEDVM-PSLPMETQGIYAVYPPGRFTQPKVRAFIDFL 296


>gi|217973116|ref|YP_002357867.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217498251|gb|ACK46444.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 292

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 152/296 (51%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           EL++HN +         + + N+   V+   G  R       L  NS  ++    + G G
Sbjct: 183 ELNQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LPDY ++D+ N   L+ +++        ++  YP+    + K++   +++  K
Sbjct: 232 IVQLPDYYIEDDINAGRLLSLLDGHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287


>gi|269959553|ref|ZP_06173935.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835740|gb|EEZ89817.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 289

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 145/292 (49%), Gaps = 15/292 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAETNSFTGAANKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G L++   +  G+  L   L +F+  YP + 
Sbjct: 63  QLYYQQCKHLVEGLELAELAVTQMQAEPKGLLKVTAPVTYGEMNLAPLLHQFIEKYPQVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ +D+     D AIRL + +Q SSLI ++L +  ++  A+P YL    EP ++
Sbjct: 123 LDLNLTNQKLDLIEQGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPAYLDRSGEPHTL 181

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
            EL  H  L+   D          W     +     R+S  ++ NS  +++     G G+
Sbjct: 182 SELSHHQCLVGTADY---------WHFKEQKREKSLRVSGRIKCNSGFALVDAAKRGLGL 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V+   DN  LV ++ D       ++  YP+    + K++   +F+
Sbjct: 233 VQLPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQNRNLSPKVRLLIDFL 284


>gi|158340507|ref|YP_001521501.1| LysR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310748|gb|ABW32362.1| transcriptional regulator, LysR family [Acaryochloris marina
           MBIC11017]
          Length = 311

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 147/288 (51%), Gaps = 6/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ F  VA   SF  A+  L LS S++S+ ++ LE ++G+KLF+R  R ++LT  G + 
Sbjct: 6   NIKTFVRVAEVESFARASNILGLSTSAVSKAVARLEADLGVKLFHRTTRSVSLTPDGKQF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++  + +    E+Q S   P G+L I+     G+  L   L+ F+  YP+I + +
Sbjct: 66  YEGCQQLLLEFDALTAEVQGSRATPRGQLTISAPAAFGRLCLVPLLQSFMQSYPEITLNI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D+  ID++    D  IR  +   S++LI  +LVT  +   A+PHYL    EP   ++L
Sbjct: 126 SIDDHAIDLAAQGIDIVIRTGQLADSANLIASRLVTYRLVVCASPHYLAEHGEPQHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H+ + F +  P     F W+  +D  +    +S  L  ++  ++++  +   G++ +P
Sbjct: 186 QRHSCLNFRN--PDTGRFFPWVLEIDGAVESYTVSGPLVFDNADAVVRSSISSLGLSQMP 243

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ K+      LV ++     P   V+ CY +    + +++AF  F+
Sbjct: 244 SFLAKEAVSRGQLVEVLNSYQPPETPVWICYLDRNFVSPRIRAFVEFM 291


>gi|332559395|ref|ZP_08413717.1| Transcriptional regulator, LysR family protein [Rhodobacter
           sphaeroides WS8N]
 gi|332277107|gb|EGJ22422.1| Transcriptional regulator, LysR family protein [Rhodobacter
           sphaeroides WS8N]
          Length = 301

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 140/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F +V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFAMVVDQGGFTDAARKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V          +      PSG LR++   D G  LL   L EFLL YPDI + +
Sbjct: 66  YDRARRVLTDAREADALVTSMQTAPSGHLRLSVATDFGVALLTPILAEFLLDYPDITVTM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+  ++  +  D AIR+   ++ SSL  RKL        A+P YL+    P+ I +L
Sbjct: 126 VLNNRSAELISEGFDMAIRV-GDLEDSSLRARKLTETTRRMIASPGYLQRHGRPMKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
             H L+          +    +  +  P GEPR       L VN   S+++  V G GIA
Sbjct: 185 TDHRLLY------HSTQAHGNVWRLLSPSGEPRQVRAPGFLTVNDGQSLLKAAVSGLGIA 238

Query: 243 LLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+++  +     LV  ++ D+   +  ++  YP       K++AF +F+
Sbjct: 239 HLPEFLFAEAMRAGLVEEVLPDLPVETLGIHAIYPAGRFTQPKVRAFIDFL 289


>gi|330820755|ref|YP_004349617.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327372750|gb|AEA64105.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 310

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 147/301 (48%), Gaps = 27/301 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++++++ +  LE  + +KL  R  R L +T  G+
Sbjct: 4   FDAMQAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVKLLNRTTRRLNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L ++S  P G+LR+     L + +L   L  F   YPDIQ+
Sbjct: 64  AFYERALRLLADMDDAETSLSDASALPRGRLRVDVPSPLARLILVPALPAFHARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R  + +   SL+ R++  + +  YAAP YL+    P   +
Sbjct: 124 DMGVSDRRVDLIGENVDCVVRGGE-LSDQSLMARRVGDLQLGVYAAPAYLERMGRPAHPR 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRIS-----CLQVNSYLSIM 232
           EL+   H ++ F     G + P  M+            G+ RIS      L V+   + +
Sbjct: 183 ELENTGHRIVGFRWARTGRVFPYAMQR-----------GDERISVQGRHVLAVDDGNAYL 231

Query: 233 QYCVLGSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + G G+  LPDY+    + N  L+ + ED    +  +Y  +P     + KL+ F ++
Sbjct: 232 AAGLAGLGVLWLPDYMARAPRANGELLPLFEDWRLDTMPLYVAFPPNRHVSAKLRVFIDW 291

Query: 290 I 290
           I
Sbjct: 292 I 292


>gi|99082300|ref|YP_614454.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038580|gb|ABF65192.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 301

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 143/293 (48%), Gaps = 18/293 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L +FL  +PDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ SSL  RKL        AAP YL+    P  I +L
Sbjct: 126 VLNNRFVELISEGFDMALRIGE-LEDSSLRARKLTETTKRMVAAPEYLEKYGRPQKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ + +     +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NEHKLLHYSNQSSGNV----WKLTA--PSGEKRQVRSTGWLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFI 290
            LP Y+  +      ++EDV+ PS  V     Y  YP       K++AF +F+
Sbjct: 239 YLPSYLYAE-AKAEGLVEDVM-PSLPVETLGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|254509622|ref|ZP_05121689.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221533333|gb|EEE36321.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 301

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFSNVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L +FL +YPDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSDPSGLLRISVATDFGVNHLSPVLSDFLSVYPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ S+L  RKL        AAP Y++    P  I +L
Sbjct: 126 VLNNRYVELISEGFDVAVRIGE-LEDSTLRARKLTETVKRMVAAPSYIEQFGRPQKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ +       +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NEHKLLHYSSQSSGSV----WKLTA--PSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP Y+  D   +  +V  M  +      +Y  YP       K++AF +F+
Sbjct: 239 HLPSYLYADALKSGEVVDAMPSLPDEVQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|28900071|ref|NP_799726.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260880646|ref|ZP_05893001.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|28808354|dbj|BAC61559.1| putative transcription regulator protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308091857|gb|EFO41552.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
          Length = 307

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 147/286 (51%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP I++ L 
Sbjct: 67  EYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLISEFLARYPKIEVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K +D+  D  D  IR+ + + SS+LI ++L        A+P YL     P    +L 
Sbjct: 127 LEDKMVDLVKDGFDLGIRIGE-LSSSNLIAKRLAPCKSVLCASPDYLAEFGTPQKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +     +   ++ ++         P+ + + VN+  +I Q  + GSGIA LP +
Sbjct: 186 SHNCLRYSYF--RGGVEWMFINNGSEYKVLPKGNFI-VNNSEAIRQLLLRGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   +    NL  +ME+   P   +Y  +PE      K++AF +FI
Sbjct: 243 IAGRDFAAGNLKPVMEEYSLPEHAIYAVFPERKHMPLKVRAFIDFI 288


>gi|114763753|ref|ZP_01443147.1| transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114543754|gb|EAU46767.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           HTCC2601]
          Length = 301

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L +FL  +P+I + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLAEFPEITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPAYFEKFGRPSRIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ + +     +    W  T   P GE R       L VN   S++  C+ G GIA
Sbjct: 185 NEHKLLHYSNQSSGNV----WKVTA--PSGEKRQVRTAGWLSVNDGQSLLNACIAGLGIA 238

Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP Y+  D     LV   + D+   +  +Y  YP       K++AF +F+
Sbjct: 239 YLPSYLYADAMKQGLVEDAIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|319427941|gb|ADV56015.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 294

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 138/277 (49%), Gaps = 13/277 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V  SGSF+ A ++L LS+S++S++I+ LE  +GI+L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVESGSFSAAGQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +          +     + E    P G LRI+  +  G+  +   + EFL  YPDIQ+
Sbjct: 64  RYYNYVCPAVQLAQEGLDAISELQQAPQGHLRISVPMVFGRVYIAPLIAEFLRRYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RKL        AA  YL     P +  
Sbjct: 124 QMHMDDKTTDLITGGFDLAIRIGE-LPDSSLIARKLAPCLSVICAAKDYLAQHGLPSTPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
            L +HN + +        +   W  +   P G  R+      QVN+  +I Q C+ G GI
Sbjct: 183 ALTQHNCLFYSYF----QDGVEW--SFQSPNGVQRVQPKGNYQVNNSDAIHQACLDGLGI 236

Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275
           A LP +IV+ +    R   ++ D   P   +Y  YP+
Sbjct: 237 ANLPRFIVEPDLQTGRLQALLTDYPLPEHGIYAVYPQ 273


>gi|170691786|ref|ZP_02882950.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143070|gb|EDT11234.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 301

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 142/296 (47%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AAE LH+S+++++  +  LE  + ++L  R  R + +T  G 
Sbjct: 4   FDAMRAFVRVVEAGSFTKAAETLHMSKTTVTHLVQQLEARLRVRLLNRTTRRINVTPDGI 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   + +   ++  +  L  +S  P G+LR+     L + +L   L  FL  YPDIQ+
Sbjct: 64  AYYERVTRLLADMDDAETSLSSASAAPRGRLRVDVPSPLARLILIPALPAFLARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R  +P    S++ R++  + +  +A+P YL     P    
Sbjct: 124 DMGVSDRTVDMIGENVDCVVRGGEP-NDQSIVARRVADLALGVFASPGYLALAGVPSHPA 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ F     G+L P  M      A V    G   ++    N+YL+     V 
Sbjct: 183 ELENSHHRIVGFSWGRAGNLYPAVMRRAGETAKVQ---GRYALAVDDGNAYLAA---GVA 236

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP Y+ K +     LV + ED       +Y  YP     + KL+ F +++
Sbjct: 237 GLGIMWLPRYMSKAHLKRRELVALFEDWQLDPMPLYIAYPPNRHVSAKLRVFIDWV 292


>gi|254475739|ref|ZP_05089125.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214029982|gb|EEB70817.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 301

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 142/293 (48%), Gaps = 18/293 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L +FL  YP+I + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDYPEITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ SSL  RKL        A+P YL+    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMALRIGE-LEDSSLRARKLTETTKRMIASPAYLEKFGRPQKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     M    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NTHKLLHYSNQSSGSM----WKITA--PSGEKRQVRTSGWLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            LP Y+  D      ++EDV+ PS       +Y  YP       K++AF +F+
Sbjct: 239 YLPSYLYSD-AMAEGLVEDVM-PSLPRETQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|146279021|ref|YP_001169180.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557262|gb|ABP71875.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 301

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +    + PSG LRI+   D G +LL   L EFL  YP I + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQIAPSGLLRISVATDFGVSLLSPILGEFLQEYPGITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+ + ++ SSL  RKL        AAP Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAIRVGE-LEDSSLRARKLTETTRRMIAAPRYFERHGRPQKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ + +     +    W   +  P GE R       L VN   S++   + G GIA
Sbjct: 185 NEHKLLHYSNQANGNV----W--KITSPTGEKRQVRTAGWLTVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  D     LV   +  +   +  +Y  YP       K++AF +F+
Sbjct: 239 YLPSFLFADAMRDGLVEEAIPGLPVETLGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|283783992|ref|YP_003363857.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282947446|emb|CBG86993.1| LysR-family transcriptional regulator [Citrobacter rodentium
           ICC168]
          Length = 305

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 147/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSVLQEMAAAETEIMETRTTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + L+     I++     D AIR  K +  SSL  R L T +    A+P Y+     P
Sbjct: 121 DITLSLVSSETFINLIERKVDVAIRAGK-LTDSSLRARPLFTSYRKIIASPEYIARFGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            ++++L +H  + F +  P  +    W +A  D  + E  I C +  NS  ++ Q C+ G
Sbjct: 180 ETVEDLKQHLCLGFSE--PVSLN--TWPVACCDGQLHE--IECGISSNSGETLKQLCLTG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV +M D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDREIARGELVELMADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|197336325|ref|YP_002156510.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197317815|gb|ACH67262.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 291

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 9/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V  +GS+T A+ +  +  ++I+R+I  LE  + I+L  RHAR L+LTE G K
Sbjct: 4   DDLNLFRQVVENGSYTAASRKTLIPVATITRRIQALEDSLDIRLLNRHARKLSLTEAGQK 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +   L  T   L E     +GKL+IA   +L + ++Q  L +F+LLYPDI I 
Sbjct: 64  FYDECAPILATLVNTSEYLGEECRGAAGKLKIAAPSNLTKRMIQPILNKFMLLYPDISIN 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + N+   +     D   R+ K  + SSLI R++ ++     A+P YL+   EP   QE
Sbjct: 124 LTMSNQPEQLDPTDWDIIFRVGKQ-RDSSLIARQIGSLEDILVASPTYLEKNSEPTHAQE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KH+L+    L+   + + +  +      G    S L V     I   C  G GI L+P
Sbjct: 183 LHKHSLLKGNPLMRWRLTNRDGESVTITDAGRFEASELNV-----IRMACSNGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D ++    +  +L+R++ D       +Y  Y        K++ F +F+
Sbjct: 238 DIMISQYLEEGSLIRVLSDWSANPRDIYMIYNYKDHQPEKVRLFIDFV 285


>gi|59712297|ref|YP_205073.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59480398|gb|AAW86185.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 291

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 9/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V  +GS+T A+ +  +  ++I+R+I  LE  + I+L  RHAR L+LTE G K
Sbjct: 4   DDLNLFRQVVENGSYTAASRKTLIPVATITRRIQALEDSLDIRLLNRHARKLSLTEAGQK 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +   L  T   L E     +GKL+IA   +L + ++Q  L +F+LLYPDI I 
Sbjct: 64  FYDECAPILATLVNTSEYLGEECRGAAGKLKIAAPSNLTKRMIQPILNKFMLLYPDISIN 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + N+   +     D   R+ K  + SSLI R++ ++     A+P YL+   EP   QE
Sbjct: 124 LTMSNQPEQLDPTDWDIIFRVGKQ-RDSSLIARQIGSLEDILVASPSYLEKNSEPTHAQE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KH+L+    L+   + + +  +      G    S L V     I   C  G GI L+P
Sbjct: 183 LHKHSLLKGNPLMRWRLTNKDGESVTITDAGRFEASELNV-----IRMACSNGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D ++    +  +L+R++ D       +Y  Y        K++ F +F+
Sbjct: 238 DIMISQYLEEGSLIRVLSDWSANPRDIYMIYNYKDHQPEKVRLFIDFV 285


>gi|15641062|ref|NP_230694.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587378|ref|ZP_01677148.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121728178|ref|ZP_01681213.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147674833|ref|YP_001216517.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153800951|ref|ZP_01955537.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|153819385|ref|ZP_01972052.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153822372|ref|ZP_01975039.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|153824937|ref|ZP_01977604.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|153828117|ref|ZP_01980784.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|227081222|ref|YP_002809773.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|254226381|ref|ZP_04919969.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|254291730|ref|ZP_04962516.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|254848178|ref|ZP_05237528.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297578653|ref|ZP_06940581.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298498842|ref|ZP_07008649.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9655514|gb|AAF94208.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121548381|gb|EAX58443.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121629575|gb|EAX61998.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|124123542|gb|EAY42285.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|125621070|gb|EAZ49416.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|126510066|gb|EAZ72660.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126520079|gb|EAZ77302.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146316716|gb|ABQ21255.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|148876359|gb|EDL74494.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|149741449|gb|EDM55479.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|150422323|gb|EDN14284.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|227009110|gb|ACP05322.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227012865|gb|ACP09075.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|254843883|gb|EET22297.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297536247|gb|EFH75080.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297543175|gb|EFH79225.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 299

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 147/289 (50%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  +++  +  ++I+R+I  LE  + ++L  RHAR LTLTE G +
Sbjct: 12  DDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++  S +  +L +   E+ +     SG++RI+   +L + ++      F+  YPDI I+
Sbjct: 72  FYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIE 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L++ N+  D+     D   R+  P + SSLI RK+  +     A+P YL +  +P   +E
Sbjct: 132 LMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPQYLSSHPQPTHAEE 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H L+    L+   + +      V+   G  + S L V     +   C  G GI L+P
Sbjct: 191 LHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNV-----VRSACSEGLGITLMP 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D +++   ++ +LV+++ D  +    +Y  Y        K++ F +F+ 
Sbjct: 246 DVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 294


>gi|170725485|ref|YP_001759511.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810832|gb|ACA85416.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 303

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 146/291 (50%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + VF  V  SGSF+ AA +L +S+S++S+++  LE ++G++L +R  R L+LTE G 
Sbjct: 4   FSAIPVFVAVIESGSFSQAASRLGISKSAVSKRVRQLEDKLGVQLLHRTTRQLSLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      + Y         + +    P G+L++ + +  G+  +   + +FL  YPDI +
Sbjct: 64  RYFEYALKSYIAAAEGVDSVTQLQGNPKGELKVNSPMSFGRLHIAPLVADFLAKYPDITL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +++D++ +D+     D AIR    +Q S+LI R+L        AAP YLK    PL   
Sbjct: 124 NMVMDDRVVDLVEGGFDLAIRAGS-LQDSTLIARRLAPCRSVICAAPEYLKKYGTPLIPT 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +HN I +            W   +D    + ++S   +VN+  ++ +  + G GIA 
Sbjct: 183 DLSRHNCINYAYFSGGS----EWTFHMDTGPLKVKVSGNYRVNNSEALQKAILSGLGIAK 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +P +IV  +     LV ++ D   P  T Y  +PE      K++ F +FI 
Sbjct: 239 IPTFIVGQDIAEGKLVPLLTDYQLPMQTFYAVFPERQHLPAKVRVFLDFIL 289


>gi|160875639|ref|YP_001554955.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160861161|gb|ABX49695.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315267828|gb|ADT94681.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 292

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 151/296 (51%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           EL +HN +         + + N+   V+   G  R       L  NS  ++    + G G
Sbjct: 183 ELSQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LPDY ++D+ N   L+ +++        ++  YP+    + K++   +++  K
Sbjct: 232 IVQLPDYYIEDDINAGHLLSLLDGHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287


>gi|194365744|ref|YP_002028354.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348548|gb|ACF51671.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 297

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 140/291 (48%), Gaps = 9/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  VA++GSF  AA ++ +  ++ SR+I  LE ++G++L +R  R LTLT+ 
Sbjct: 2   IDLNDVALFVQVAKAGSFAEAARRIGMPSNTASRRIQQLEEQLGVRLLHRSTRKLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+  + E    L    +EL E S  P GK+R+A  +D         ++ FL  +P +
Sbjct: 62  GEGLYARSVEQIEALADATLELSEGSEVPVGKVRVAAPVDFFNWFQLEWVQSFLQAHPRV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ +L++   D+  D  D AIR    +   +LI RK+        A+P YL++   P +
Sbjct: 122 RLEFVLNDARADLVADGIDVAIR-GGAVTGPTLIARKVGNNRAVLVASPAYLESRGAPSA 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++L  H+ I     +P       W L   D P           NS L++ + CV G GI
Sbjct: 181 LEDLSTHDCIA----VPSGSGRTQWRLMGPDGPAEVEVRGRFSANSALALTKACVAGMGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           ALL + +V        LV+++ D       ++  Y    +      AF +F
Sbjct: 237 ALLTEAMVAQPLREGKLVQVLPDYRIDGLELFVVYQSRRQLPRAASAFVDF 287


>gi|304409008|ref|ZP_07390629.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307303011|ref|ZP_07582766.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304352829|gb|EFM17226.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306913371|gb|EFN43793.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 292

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 151/296 (51%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           EL +HN +         + + N+   V+   G  R       L  NS  ++    + G G
Sbjct: 183 ELSQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LPDY ++D+ N   L+ +++        ++  YP+    + K++   +++  K
Sbjct: 232 IVQLPDYYIEDDINAGRLLSLLDGHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287


>gi|126174633|ref|YP_001050782.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125997838|gb|ABN61913.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 292

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 151/296 (51%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           EL +HN +         + + N+   V+   G  R       L  NS  ++    + G G
Sbjct: 183 ELSQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LPDY ++D+ N   L+ +++        ++  YP+    + K++   +++  K
Sbjct: 232 IVQLPDYYIEDDINAGRLLSLLDGHREAKEGIWAIYPQNRHLSAKIRVLVDYLAEK 287


>gi|89069953|ref|ZP_01157286.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89044507|gb|EAR50635.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 295

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 140/292 (47%), Gaps = 18/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   +
Sbjct: 1   MEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V +        +      PSG LRI+   D G N L   L +FL  +P+I + ++
Sbjct: 61  DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLQEFPEITVNMV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +++  +  D A+R+ + ++ S+L  RKL        AAP Y +    P  I +L+
Sbjct: 121 LNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTDTTKRMIAAPSYFEEYGRPERIDDLN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243
           +H L+ + +     +    W  T   P GE R       L VN   S++  C+ G GIA 
Sbjct: 180 EHKLLHYSNQSNGSV----WKLTA--PSGEKRQVRTAGWLTVNDGQSLLNACISGLGIAY 233

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFI 290
           LP ++  D   L + + +V  P   V     Y  YP       K++AF +F+
Sbjct: 234 LPSFLYAD--ALAKGLVEVAIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFL 283


>gi|229505356|ref|ZP_04394866.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229510974|ref|ZP_04400453.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229515431|ref|ZP_04404890.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
 gi|229518095|ref|ZP_04407539.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229525658|ref|ZP_04415063.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229529860|ref|ZP_04419250.1| hypothetical protein VCG_002961 [Vibrio cholerae 12129(1)]
 gi|229608375|ref|YP_002879023.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|5565924|gb|AAD45271.1| AphB [Vibrio cholerae]
 gi|229333634|gb|EEN99120.1| hypothetical protein VCG_002961 [Vibrio cholerae 12129(1)]
 gi|229339239|gb|EEO04256.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229344810|gb|EEO09784.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229347200|gb|EEO12160.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
 gi|229350939|gb|EEO15880.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229357579|gb|EEO22496.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229371030|gb|ACQ61453.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
          Length = 291

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 147/289 (50%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  +++  +  ++I+R+I  LE  + ++L  RHAR LTLTE G +
Sbjct: 4   DDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++  S +  +L +   E+ +     SG++RI+   +L + ++      F+  YPDI I+
Sbjct: 64  FYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L++ N+  D+     D   R+  P + SSLI RK+  +     A+P YL +  +P   +E
Sbjct: 124 LMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPQYLSSHPQPTHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H L+    L+   + +      V+   G  + S L V     +   C  G GI L+P
Sbjct: 183 LHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNV-----VRSACSEGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D +++   ++ +LV+++ D  +    +Y  Y        K++ F +F+ 
Sbjct: 238 DVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 286


>gi|86137203|ref|ZP_01055781.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85826527|gb|EAQ46724.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 305

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 146/304 (48%), Gaps = 19/304 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LET +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLETRLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L +FL  +PDI + +
Sbjct: 66  YDRARRVLNDAGEADALVSSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ SSL  RKL        A+P YL+    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMALRIGE-LEDSSLKARKLTETTKRMIASPSYLEQFGRPQKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NSHKLLHYSNQSSGNV----WKITA--PSGEKRQVRTTGWLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF-----LKA 294
            LP Y+  +     LV  +M ++   +  +Y  YP       K++AF +F+        +
Sbjct: 239 YLPSYLYSEAMEEGLVEDVMPNLPMETQGIYAVYPPGKFTQPKVRAFIDFLAHSFAGKDS 298

Query: 295 RDWK 298
            DW+
Sbjct: 299 EDWR 302


>gi|254254447|ref|ZP_04947764.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124899092|gb|EAY70935.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 322

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 141/296 (47%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AAE LH+S+++++  +  LE  + ++L  R  R L +T  G 
Sbjct: 22  FDAMRAFIRVVEAGSFTKAAETLHMSKTTVTHLVQQLEARLRVRLLNRTTRRLNVTPDGI 81

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  +S  P G+LR+       + +L   L  FL  YPDIQ+
Sbjct: 82  AYYERVVRLLADMDDAETSLSSASAVPRGRLRVDVPSPFARLILIPALPAFLARYPDIQL 141

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +DI  +  DC +R  +P    S++ R++  + +  +A+P YL     P    
Sbjct: 142 DMGVSDRTVDIIRENVDCVVRGGEP-ADRSMVARRVAGLSLGVFASPRYLALAGTPSHPA 200

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ F     G+L P  M   +    V    G   ++    N+YL+     V 
Sbjct: 201 ELENSHHRIVGFSWGRAGNLYPLVMHRRDETINVQ---GRYALAVDDGNAYLAA---GVA 254

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP Y+ K   +   LV + +D       +Y CYP     + KL+ F +++
Sbjct: 255 GLGIMWLPHYMAKAAIEQRELVALFDDWQLDPMPLYVCYPPNRHVSPKLRVFIDWV 310


>gi|26988347|ref|NP_743772.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24983097|gb|AAN67236.1|AE016350_9 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 298

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 145/295 (49%), Gaps = 15/295 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W+ +  F  VA SG FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TL+
Sbjct: 1   MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEDRLQTRLLYRSTRRVTLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP
Sbjct: 61  EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + L N  +D+  +  D AIRL + +  S L+  +L    M+   +P YL+    P
Sbjct: 121 QLRVDVELSNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCVSPAYLERYGRP 179

Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238
            S+ EL +HN L+   DL         W    D R I +      + NS  +++   + G
Sbjct: 180 HSLSELARHNCLVGSSDL---------WALQQDGREISQRVQGNWRCNSGQAVLDAALQG 230

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  LPDY V ++ N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 231 IGLCQLPDYYVLEHLNSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYL 285


>gi|209694335|ref|YP_002262263.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
 gi|208008286|emb|CAQ78432.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
          Length = 290

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 146/292 (50%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+ +  F  VA + SFT AA+ L  S + ISR+++ LE  + IKL  R  R +++TE 
Sbjct: 2   INWEGVTEFVAVAEAQSFTGAAKALDTSVAQISRKVAALEERLSIKLLIRTTRKVSVTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +   L+     + E +  P G+L+I +++  G+ L+   L +F+L+YP +
Sbjct: 62  GQTYYQHCRHLVEGLKQADRAITELNATPQGRLKITSSVTYGEQLIAPLLSDFMLMYPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+L N+  D+     D AIRL + +  S+++ ++L +  +   A+P Y++   EP +
Sbjct: 122 ELELVLSNQTFDLVEQDFDLAIRLGR-LSDSTMMAKRLSSRQVRVCASPAYIEKYGEPHT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + EL +HN +     I        W    ++     R+   +  NS  ++    + G GI
Sbjct: 181 LSELSQHNCLVGSLPI--------WRFIENKKEKSVRVKGSVHCNSGAALTNAALKGLGI 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPD+ V+   D   LV I+     P   ++  YP     + K++    F+
Sbjct: 233 VQLPDFYVQESMDKGELVEILVPYREPKEGIWAVYPNNRHLSTKVRLLVEFL 284


>gi|332160217|ref|YP_004296794.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325664447|gb|ADZ41091.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860094|emb|CBX70418.1| hypothetical protein YEW_BJ06650 [Yersinia enterocolitica W22703]
          Length = 303

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 138/291 (47%), Gaps = 18/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA  GSFT AA  + L +SS+S++IS LE  +GI+L  R  R L LT  G +  
Sbjct: 8   MALFARVAECGSFTRAAAMVGLPKSSVSQRISQLEQSLGIRLLTRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ ++++
Sbjct: 68  VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLATDFQRQYPDVLLEVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  D  D A+R  KP Q SSLI R+L     +  A+P YL      L  ++LD
Sbjct: 128 VSDSMVDLVEDGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLLHPRQLD 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIAL 243
            H          +C+    W A + R   E    ++  L V   L   + C L G GI L
Sbjct: 187 TH----------RCIAHRAWQALILRHEDEFFRWQVPALHVTDNLLYARECALNGGGITL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LP ++ ++   N  L+ ++         +Y  YP    N+  L  F + + 
Sbjct: 237 LPAFLSREVVANRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVVM 287


>gi|311108649|ref|YP_003981502.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763338|gb|ADP18787.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           175 [Achromobacter xylosoxidans A8]
          Length = 302

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 145/290 (50%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R F  +   GS   AAE L +S + +S+Q+  LE+ +G  L  R  R ++LT+ G+
Sbjct: 4   FNYMRAFRRIVELGSLAKAAENLDMSSAGLSKQLRALESHLGAVLIQRTTRKMSLTDTGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +L+  +  ++  S   SG+LR+   +    ++L   L  FL  YPD+++
Sbjct: 64  AYYAECCRLLDELDALEKSVKRESRLVSGRLRVNAPVSFALSVLSPLLARFLRQYPDLRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L ++++ +D      D +IRLR  +  SSLI R+L ++     AAP YL +   P S++
Sbjct: 124 DLAMEDRLVDAVGQGFDVSIRLRAQLDDSSLIARRLASLTQVLCAAPSYLDSRGRPDSVE 183

Query: 185 ELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            L  H+++++     P  + D       D P+  P  + +QVN+ L +      G GI  
Sbjct: 184 ALRGHDILSYSLAESPGAVADEETGQQAD-PLAGP--AQVQVNNSLMLRDLLEAGLGIGA 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++      +  LVR++  +      VY  YP +     K+KAF +F+
Sbjct: 241 LPSFLAAPAIASGRLVRVLPQLPAAPRHVYAVYPTSRHLQPKVKAFVDFL 290


>gi|115360997|ref|YP_778134.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286325|gb|ABI91800.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 304

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 140/296 (47%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AAE LH+S++++++ +  LE  + ++L  R  R + +T  G 
Sbjct: 4   FDAMRAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVRLLNRTTRKINVTPDGI 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   + +   ++  +  L  +S  P G+LR+       + +L   L  FL  YPDIQ+
Sbjct: 64  AYYERVTRLLADMDDAETSLSSASAAPRGRLRVDVPSPFARLILIPALPAFLARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +DI  +  DC +R  +P    S++ R++  + +   A+P YL     P    
Sbjct: 124 DMGVSDRTVDIIGENVDCVVRGGEP-NDQSMVARRVADLSLGIVASPGYLALAGTPSHPA 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ F     G L P  M        V    G   ++    N+YL+     V 
Sbjct: 183 ELENSHHRIVGFSWGRAGKLYPLVMHRHGETVAVQ---GRYALAVDDGNAYLAA---GVA 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP Y+ K   +   LV + ED       +Y  YP     + KL+AF +++
Sbjct: 237 GLGIMWLPHYMAKAHLERGELVTLFEDWQLDPMPLYIAYPPNRHVSAKLRAFIDWV 292


>gi|254507200|ref|ZP_05119337.1| transcriptional regulator [Vibrio parahaemolyticus 16]
 gi|219549910|gb|EED26898.1| transcriptional regulator [Vibrio parahaemolyticus 16]
          Length = 290

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 151/296 (51%), Gaps = 11/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA++L  S + +SR++S LE  + +KLF R  R ++LTE G
Sbjct: 3   NWEGVSEFVGVAETQSFTAAAKKLDTSVAQVSRRVSSLEERLAVKLFNRTTRRVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++   ++   LE  ++ + +    P G L++   +  G+  L   L +FL  YP + 
Sbjct: 63  QLYYQQCKQLVEGLELAELAVTQMQSTPKGLLKVTAPVTYGEQQLAPLLHQFLEKYPQVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ +D+     D AIRL + +Q SSL+ ++L +  ++  A+  YL    EP ++
Sbjct: 123 LDLNLTNQKLDLIEMGVDVAIRLGR-LQDSSLVAKRLSSRQLYVCASKEYLDRFGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +  G +     +D     ++ R  G  RI C   NS  S++   + G G+  
Sbjct: 182 SELSNHQCLV-GSVDYWRFKDSKGEKSI-RVSG--RIHC---NSGYSLLDAAIRGLGLVQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LPDY V+   D  +L+ ++ D       ++  YP+    + K++   +F+  K +D
Sbjct: 235 LPDYYVQSALDTGSLIEVLSDYRDEREGIWALYPQNRNLSPKVRLLIDFLAEKLKD 290


>gi|107027275|ref|YP_624786.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691328|ref|YP_836861.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896649|gb|ABF79813.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649328|gb|ABK09968.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 305

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE  +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+YH+ E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTISEKAGEIYHQAEEAESSAREMSVQPRGLVRLAVPMSYGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +     A+P YL+    P   
Sbjct: 126 IDLHLSDASVDLVADGFDAALRIAA-LPDSSLVARRLCAVTQFVVASPEYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL     +++       +  F   A  + P+       L+V +  +++   + G  IA 
Sbjct: 185 RELVDRPCLSYAYRARSAVWRFTNDAGEEEPVMP--TGPLRVTNSDALLPTLLDGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++ 
Sbjct: 243 LPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVAALSDYF 292


>gi|318607217|emb|CBY28715.1| transcriptional regulator [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 303

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 138/291 (47%), Gaps = 18/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA  GSFT AA  + L +SS+S++IS LE  +GI+L  R  R L LT  G +  
Sbjct: 8   MALFARVAECGSFTRAAAMVGLPKSSVSQRISQLEQSLGIRLLTRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ ++++
Sbjct: 68  VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLATDFQRQYPDVLLEVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  D  D A+R  KP Q SSLI R+L     +  A+P YL      L  ++LD
Sbjct: 128 VSDSMVDLVEDGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLLHPRQLD 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIAL 243
            H          +C+    W A + R   E    ++  L V   L   + C L G GI L
Sbjct: 187 TH----------RCIAHRAWQALILRHEDEFFRWQVPALHVTDNLLYARECALNGGGITL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LP ++ ++   N  L+ ++         +Y  YP    N+  L  F + + 
Sbjct: 237 LPAFLSREVVANRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVVM 287


>gi|298488354|ref|ZP_07006386.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157176|gb|EFH98264.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 298

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA++L +S S ISRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S ++  +L    M+  AAP Y++    P S+ 
Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCAAPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+ + N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286


>gi|289626011|ref|ZP_06458965.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651472|ref|ZP_06482815.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868565|gb|EGH03274.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 298

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA++L +S S ISRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S ++  +L    M+  AAP Y++    P S+ 
Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCAAPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+ + N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286


>gi|91224247|ref|ZP_01259510.1| putative transcription regulator protein [Vibrio alginolyticus
           12G01]
 gi|91191158|gb|EAS77424.1| putative transcription regulator protein [Vibrio alginolyticus
           12G01]
          Length = 307

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP I++ L 
Sbjct: 67  EYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLISEFLARYPKIEVDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K +D+  D  D  IR+ + + SS+LI ++L        A+P YL+    P    +L 
Sbjct: 127 LEDKMVDLVKDGFDLGIRIGE-LTSSNLIAKRLAPCKSVLCASPDYLEEFGTPQKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +     +   ++ ++         P+ + + VN+  +I Q  + GSGIA LP +
Sbjct: 186 GHNCLRYSYF--RGGVEWMFINNGSEYKVLPKGNFI-VNNSEAIRQLLLRGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   +    NL  +ME+   P   +Y  +PE      K++AF +FI
Sbjct: 243 IAGRDFAAGNLKPVMEEYSLPEHAIYAVFPERKHMPLKVRAFIDFI 288


>gi|123440948|ref|YP_001004937.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087909|emb|CAL10697.1| putative LysR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 303

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 138/291 (47%), Gaps = 18/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA  GSFT AA  + L +SS+S++IS LE  +GI+L  R  R L LT  G +  
Sbjct: 8   MALFARVAECGSFTRAAAMVGLPKSSVSQRISQLEQSLGIRLLTRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ ++++
Sbjct: 68  VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLTRLATDFQRQYPDVLLEVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  D  D A+R  KP Q SSLI R+L     +  A+P YL      L  ++LD
Sbjct: 128 VSDSMVDLVEDGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLLHPRQLD 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIAL 243
            H          +C+    W A + R   E    ++  L V   L   + C L G GI L
Sbjct: 187 TH----------RCIAHRAWQALILRHEDEFFRWQVPALHVTDNLLYARECALNGGGITL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LP ++ ++   N  L+ ++         +Y  YP    N+  L  F + + 
Sbjct: 237 LPAFLSREVVANRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVVM 287


>gi|126740855|ref|ZP_01756540.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126718151|gb|EBA14868.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 306

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 142/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LET +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLETRLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L +FL  +PDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+ + ++ SSL  RKL        A+P YL+    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAIRIGE-LEDSSLRARKLTETTKRMIASPAYLEQFGRPQKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NTHKLLHYSNQSSGNV----WRITA--PSGEKRQVRTTGWLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP Y+  +  +  LV  +M  +   +  +Y  YP       K++AF +F+
Sbjct: 239 YLPSYLYAEALSEGLVEDVMPSLPMETQGIYAVYPPGKFTQPKVRAFIDFL 289


>gi|89052771|ref|YP_508222.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88862320|gb|ABD53197.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 301

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 143/297 (48%), Gaps = 14/297 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LR++   D G N +   L EFL  +PDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTAMQSAPSGTLRVSIATDFGVNHVSPILGEFLHAFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+ + ++ SSL+ RK+        AAP Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAIRVGE-LEDSSLMARKICETQRRMIAAPSYFEEYGRPERIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ + +     +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NEHKLLHYSNSSAGNV----WKITA--PSGELRQVRTAGWLTVNDGQSLLNAAIGGLGIA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP ++  +      LV  M D+ T    VY  YP       K+++F +++    RD
Sbjct: 239 YLPSFLYAEPLRQGLLVDAMPDLPTDVQGVYAVYPPGRYIQPKVRSFIDYLVEAFRD 295


>gi|182677612|ref|YP_001831758.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633495|gb|ACB94269.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 301

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 139/289 (48%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  VAR+G  T AA  L +  +++SR+I+GLE  + +KLF RH  G  LT  
Sbjct: 4   FDWNSLRSFLAVARTGRLTTAARTLGVDHTTLSRRIAGLEEALKVKLFERHPSGYRLTNA 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +     TTQ ++    +  +G +RI      G N L   +      +P +
Sbjct: 64  GDRLLLSAETMESIALTTQSQIGGEDLAVTGAVRIGAPEGFGSNFLASRIAALCHQHPQL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L  P +   L+ RKL    +  YAAP YL       S
Sbjct: 124 EIQLVAMPRLFSLSKREADIAISLAPP-REGRLVARKLTDYRLRLYAAPAYLATLPPIKS 182

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           I++L     I +  DLI    ++ ++L  +   +  P+   L+  + ++ +   + G+GI
Sbjct: 183 IEDLRDCRFIGYIDDLIYS--QELDYLGEIASFL-SPQ---LKSANLIAQLNAAITGTGI 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPD+I +    LV ++   ++   + +      L+   ++K    FI
Sbjct: 237 CVLPDFIARGCEGLVPVLPSQVSLMRSFWLVTHADLRGLARIKTVSAFI 285


>gi|37525474|ref|NP_928818.1| hypothetical protein plu1525 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784902|emb|CAE13818.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 302

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 129/250 (51%), Gaps = 7/250 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L +F  V  +GSF+ AAE L L+ S++SR I  LE ++G+ L  R  R L+LT
Sbjct: 1   MKANSEELTIFVSVVENGSFSRAAEHLQLANSAVSRSIKKLEKKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + E+ ES   PSG LRI     +  +LL   +K F   YP
Sbjct: 61  EEGERYFRRVQHVLQEMAAAETEIMESKHTPSGLLRIDAATPVVLHLLIPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + LI     I++     D AIR+   +  SSL  R L + +    A+P YLK    P
Sbjct: 121 EITLSLISSETYINLIERKVDIAIRVGN-LTDSSLRARPLFSSYRKIVASPEYLKKYGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             I+EL  H  + F +  P  +    W +A  D  + E  +  L  NS  ++ Q CV G+
Sbjct: 180 QCIEELKNHICLGFTE--PVSLN--TWPIACQDGQLHEITVG-LSSNSGETLKQLCVTGN 234

Query: 240 GIALLPDYIV 249
           GIA L DY++
Sbjct: 235 GIACLSDYMI 244


>gi|149189272|ref|ZP_01867558.1| AphB/LysR family protein [Vibrio shilonii AK1]
 gi|148836831|gb|EDL53782.1| AphB/LysR family protein [Vibrio shilonii AK1]
          Length = 291

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 144/289 (49%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S +  +L +T  ++ +     SGKL+I++  +L + ++     +F+  YPDI ++
Sbjct: 64  FYNECSPLLQRLTSTTEDIADECKGASGKLKISSPSNLTKRMMMPMFNDFMSKYPDISLE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + N    +     D   R+  P + SSLI RK+ T+     A P YL    EP   +E
Sbjct: 124 LTMSNHADQLDPTEWDVIFRV-GPQRDSSLIARKISTVKDILVAHPDYLSLNGEPKHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+    LI   +++ +  + ++   G       + NS   + + C  G GI L+P
Sbjct: 183 LSTHRLLKGAPLIKWQLKNTSGESIINNTKGR-----FEANSLNVVRRACSAGLGITLMP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++K+   N  LVR++ +       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMLKEYINNGELVRVLPEWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|90409019|ref|ZP_01217148.1| transcriptional regulator, LysR family protein [Psychromonas sp.
           CNPT3]
 gi|90309877|gb|EAS38033.1| transcriptional regulator, LysR family protein [Psychromonas sp.
           CNPT3]
          Length = 288

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 147/289 (50%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  V+ + SFT AA ++ +S + +SRQ+S LE  + IKLFYR  R ++LT++G 
Sbjct: 3   WEGINEFVYVSETESFTKAARRMSISTAQVSRQVSALENRLNIKLFYRTTRKISLTQEGH 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + + LE  +  +     +P G +++   +  G+  +   + +F+LLYPDI++
Sbjct: 63  IFYQHCRLLLNGLEDAKRAISNLQDRPRGMIKLTAPVSYGEQQILPLVNDFMLLYPDIEV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+ +D+  D  D AIR+ K +  S+++ +KL     +  A+P YL+    PLS+ 
Sbjct: 123 FAYLGNQQVDLVGDGYDLAIRIGK-LSDSTMMAKKLSVRSNYVCASPFYLEKYGTPLSLL 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++HN +    ++       N +    R  G      L+ NS   +    +   GI  L
Sbjct: 182 DLNQHNCLM--GVLDHWHFKENGIEKKIRVKGN-----LRYNSGWGLADAALKSQGIVQL 234

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD  V+   D+  L+ I+E    P  +++  YP       K++   +F+
Sbjct: 235 PDCYVQKHLDSGTLMSILEHCQEPDESIWAVYPHNRHLCSKIRLLVDFL 283


>gi|114320559|ref|YP_742242.1| LysR family transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226953|gb|ABI56752.1| transcriptional regulator, LysR family [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 305

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 143/298 (47%), Gaps = 19/298 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF  A+E+L  + S+ SRQ+S LE  +  +LF R  R LTLTEQG   +
Sbjct: 7   MEAFVAVVEAGSFVAASERLGRATSTTSRQVSELEAHLQARLFQRTTRRLTLTEQGQVFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++  +LE  + E+   + +P+G LR+   +  G   L G + +F   +P + + L 
Sbjct: 67  RHCKDLLARLEEAEAEVGAGTGEPNGVLRVTAPVSFGTLHLAGLIPQFHARHPRVHLNLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  +  D A+R+ + +    L+ RKL ++ +   AAP YL     P   + L 
Sbjct: 127 LDDRQVDLMGEGHDLALRISRSL-PEHLVARKLASVSIITCAAPGYLAQAGRPERPEALQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSGI 241
            H  + +    P       W  T   P G   +   +V  YL+     VL      G GI
Sbjct: 186 AHTCLLYSQAEPY----RTW--TYQGPQGPIPV---RVGGYLTANNGDVLRAAALAGDGI 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP ++V+D+ +  R++  +         VY  YP       K++AF +F+    RD
Sbjct: 237 AQLPAFLVRDDLSAGRLVPLLPDYPLPPLGVYAVYPSRRYLPAKVRAFVDFLAETWRD 294


>gi|256822463|ref|YP_003146426.1| LysR family transcriptional regulator [Kangiella koreensis DSM
           16069]
 gi|256796002|gb|ACV26658.1| transcriptional regulator, LysR family [Kangiella koreensis DSM
           16069]
          Length = 302

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 148/291 (50%), Gaps = 12/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  V + GSFT AAEQL  S   +S+ +S LE+++ ++L +R  R +T+TE G  
Sbjct: 5   DLMQAFISVVQQGSFTSAAEQLGTSTQLVSKYVSQLESDLKVRLLHRTTRSVTVTEAGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++   +ET +  ++E   +P G+LRI+  +      L   L E+   YP++ I 
Sbjct: 65  YLERAQQILSDIETLEGSIKEEGDEPRGRLRISAPMSFSTLHLGKLLAEYQQQYPEVTID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+++ +DI  +  D AIR+   ++SSSLI RK+  I +   A+P YL    EP S++E
Sbjct: 125 LQLNDRKVDIVEEGFDLAIRIGD-LESSSLIARKIAPIQLVMCASPDYLHQHGEPQSLEE 183

Query: 186 LDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H  + +    + +P  +   +    ++R  G      +  N+   + +  V G+GI 
Sbjct: 184 LKGHRYLHYSYRNEDLPALVSTQSASMVLNRQKG-----SIAANNGEVLAKAAVAGAGIV 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L P +IV        L  I++        +Y  YP     +GK+++F +++
Sbjct: 239 LQPTFIVGPYIAQGKLKPILKQHQQEPLGLYAVYPHRKYLSGKVQSFIDYL 289


>gi|148975168|ref|ZP_01812092.1| putative transcriptional regulator [Vibrionales bacterium SWAT-3]
 gi|145965092|gb|EDK30342.1| putative transcriptional regulator [Vibrionales bacterium SWAT-3]
          Length = 289

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 148/297 (49%), Gaps = 25/297 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA   SFT AA++L  S + ISR+++ LE  + +KL  R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAERESFTGAAQKLATSVAQISRRVANLEERLAVKLLNRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P G L++   +  G+  L   L +FL L+P ++
Sbjct: 63  QLYYQQCKLLVEGLEIAELAVTQMQSTPKGLLKVTAPVTYGERQLAPILHQFLKLHPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L N+ +D+     D AIRL + ++ SSL+ +KL    ++  A+P Y++N  EP ++
Sbjct: 123 LELMLTNQKLDLIDSGVDVAIRLGR-LEDSSLVAKKLSQRQLYVCASPEYIENYGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQYCV 236
            EL  H  +  G       E + +     +  G P       RI C   NS L+++    
Sbjct: 182 SELTNHQCLVGG------FEHWRF-----KENGRPRSVRVNGRIKC---NSGLALLDAAK 227

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              G+  LP+Y V    D+  LV ++ D       ++  YP+    + K++   +F+
Sbjct: 228 QSIGLVQLPEYYVSEDLDSGELVEVLSDYRDDKEGIWALYPQNRNLSSKVRLLVDFL 284


>gi|77460131|ref|YP_349638.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384134|gb|ABA75647.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 302

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 147/289 (50%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V   GSF+  A +LH +Q +IS+ +  LE E+G KL  R  R L+LT++G +
Sbjct: 5   NAMAIFVRVVERGSFSAVARELHTTQPTISKVLRALENELGGKLIARSTRKLSLTDEGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   ++  +   Q      +G LRI +++  G+  +   L EFL  +P +Q+ 
Sbjct: 65  YYNECRNILAAVDAAEHSFQSGRETVAGPLRIGSSVSFGRLHIASRLAEFLQRFPQVQVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D ++R+ + +  S +I R++ T H    A P YL+    P S Q+
Sbjct: 125 LQLSDQNLDLVSEGLDVSLRIGE-LNDSGMIARRIGTTHRLTVATPDYLRRHGHPQSPQD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +HN + F  L  + +    W    D    + RI    Q N+  +I +  + G G++L 
Sbjct: 184 LAQHNCLQFNLLSTQNL----WTYEKDGQHHDVRIQGNAQSNNSEAIREMVLGGLGVSLS 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++  ++     ++ +++D  T S  ++   P   + + ++ AF +F+
Sbjct: 240 PVWLFSEDLKAGRVIALLQDYQTRSLPIHAVSPANRRQSARVNAFVDFM 288


>gi|197337542|ref|YP_002158766.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314794|gb|ACH64243.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 300

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 8/296 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+F+   +D + +F  V  SGSFT AA     S S IS++I  LE  +G++L +R  R L
Sbjct: 1   MAFNSALFDGMVIFSEVVTSGSFTQAALNSGHSTSYISKEIGKLEERLGVRLLHRTTRTL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT +G    +   ++    +  +  +     KP G+L+++  +    + L+  L +F  
Sbjct: 61  RLTPEGELYFQQCQQLIEDAQMAENSITGQQEKPKGRLKVSCPVGFALSRLRPILGKFTD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYPDI ++L L+++ IDI  +  D AIR    ++ SSLI R+ +       A+P YLK  
Sbjct: 121 LYPDITLELDLNDRKIDIVAEGFDMAIRASHQLEDSSLISRRFLRSRAITIASPDYLKKH 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             PL   EL  H  I +  +    + DF       +P+     S +  N+    +  C+ 
Sbjct: 181 GAPLHPNELPSHKTIGYAYVKQGAVWDFT--DKNSQPLAIQLNSQVITNNSFMELSLCLA 238

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  +P + + D      LV +  D    +  ++  YP     + K++ F +FI
Sbjct: 239 GQGITRIPHFHLTDELETGKLVELFADYPKLTIDIFMVYPSRKHMSAKVRCFMDFI 294


>gi|254227935|ref|ZP_04921365.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262396082|ref|YP_003287935.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151939431|gb|EDN58259.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262339676|gb|ACY53470.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 307

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 147/286 (51%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP I++ L 
Sbjct: 67  EYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLISEFLARYPKIEVDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K +D+  D  D  IR+ + + SS+LI ++L        A+P YL     P    +L 
Sbjct: 127 LEDKMVDLVKDGFDLGIRIGE-LTSSNLIAKRLAPCKSVLCASPDYLAEFGTPQKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +     +   ++ ++         P+ + + VN+  +I Q  + GSGIA LP +
Sbjct: 186 SHNCLRYSYF--RGGVEWMFINNGSEYKVLPKGNFI-VNNSEAIRQLLLRGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   +    NL  +ME+   P   +Y  +PE      K++AF +FI
Sbjct: 243 IAGRDFAAGNLKPVMEEYSLPEHAIYAVFPERKHMPLKVRAFIDFI 288


>gi|269962869|ref|ZP_06177209.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832423|gb|EEZ86542.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 295

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 156/290 (53%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+VF  VA+ GSFT AA +L+ +QS++S++I+ LE+EVGI LF+RHAR ++LT  G 
Sbjct: 4   FDCLKVFSRVAQLGSFTSAANELNTTQSAVSKKIAWLESEVGITLFHRHARAISLTSGGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +   +   +  ++++ + +L++     SG+L+++        LL   L EFL  +P++ +
Sbjct: 64  QYLELAQTLTEQMDSFESQLRQEQASVSGELKLSVPSAFSVRLLSAPLNEFLNQHPELSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + +K +D+     D AIR    ++ S L  R L+   +  +A+P YL   +   +  
Sbjct: 124 DVSVSDKFVDLVEGNVDIAIRAAY-LKDSGLKARWLMDNELVYFASPSYLDKNKPIHTAN 182

Query: 185 ELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L KH  +T+    P  +  F +   T+   + E     ++ +S   ++Q   LG GIA 
Sbjct: 183 DLSKHLCLTYSLSNPSNLWRFSDGNETIKVKVKEQ----VRSDSPEMLVQMAKLGQGIAA 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P ++V+    N  L++++    +    +Y  Y ++     +++ F +F+
Sbjct: 239 MPKWMVEQELINGELIQVLTQYQSVKLPMYLVYKDSEYQPQRIRTFIDFL 288


>gi|212709333|ref|ZP_03317461.1| hypothetical protein PROVALCAL_00368 [Providencia alcalifaciens DSM
           30120]
 gi|212688245|gb|EEB47773.1| hypothetical protein PROVALCAL_00368 [Providencia alcalifaciens DSM
           30120]
          Length = 338

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 8/253 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  V  +G+F+ AAE+LHL++S++S+ IS LE  +GI LF R  R  TLT  
Sbjct: 39  LDLNCLPIFIAVVEAGNFSAAAERLHLTRSAVSKSISRLEGSLGIALFQRTTRQQTLTND 98

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+    +  + L+     L+       GK+ I     LG   +   L E + LYP +
Sbjct: 99  GMVLYEYAGKALNALQEASNYLESGKRNVEGKVCITAPRLLGNLYVVPLLVELMKLYPKL 158

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +L+++++D+  +    A+R+ K   S+ LI  ++    M   A+P YL     P  
Sbjct: 159 EIETVLNDRNVDLQQEGVHVAVRVGKLADSNQLIAHEIGYHKMIFCASPSYLAEHGIPQQ 218

Query: 183 IQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + ELDKH LI +   G ++P  + D N  A    P     IS L ++   +IM   + G+
Sbjct: 219 LSELDKHQLIAYTQAGKILPWHVFDQNQQAHRYLP-----ISKLVMDDMQTIMFAALNGA 273

Query: 240 GIALLPDYIVKDN 252
           GIA LP ++VK+N
Sbjct: 274 GIAYLPQWLVKEN 286


>gi|153010253|ref|YP_001371467.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562141|gb|ABS15638.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 301

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 16/252 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V  +GSF+ AA  L ++ S+IS+ IS +E  +G++L  R +R L+LT +G   
Sbjct: 7   EMQVFLRVVETGSFSEAARLLRMNPSTISKLISRIEARLGVRLLERSSRRLSLTTEGQIY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +    E  + EL + S    G +R+  ++ LG   L+  L EFL  YP+I I L
Sbjct: 67  YERSQGLLRDFEEVERELSQGSASTGGTVRVNASVALGTLALEPLLPEFLSAYPNIVIDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+ +D  D A R+   + +SS++ RKL T      AAP YL+ C  PL+I +L
Sbjct: 127 SLSDELVDLYLDRTDVAFRI-GTLPNSSMMARKLGTARRKIVAAPAYLERCGMPLTIDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATV------DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             HN I F         +F   A V       R +       L  N+  ++ +  V G G
Sbjct: 186 IDHNCIGF---------NFRRAAPVWPLKESGRIVDRAVYGSLLANNGETVRRMAVAGLG 236

Query: 241 IALLPDYIVKDN 252
           +A + DY  +++
Sbjct: 237 LARIGDYHARND 248


>gi|300692442|ref|YP_003753437.1| transcriptional regulator, lysR family [Ralstonia solanacearum
           PSI07]
 gi|299079502|emb|CBJ52180.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 305

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 142/286 (49%), Gaps = 21/286 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE E+ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAAARLDLPKSSVSRGIAALEQELNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S     +E       E    P GK+R+    D+G+ L+   +  F+  YPDI
Sbjct: 61  GQSLYQVASHALEDIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMQQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTARNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQKQGVPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
           +++L  H+ + F         +  W     R +G   +  + V + L+      L     
Sbjct: 180 VRDLGHHSCLDFRG---TGRGETQW-----RLVGPDGLKTVAVRARLNADSLSYLETLIA 231

Query: 238 -GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
            G+GI  LP Y   + + N   P LVR++ D  T    ++   P A
Sbjct: 232 SGAGIGPLPLYAGGVARANAPLPRLVRVLPDYATSGEPLHLVTPTA 277


>gi|156935278|ref|YP_001439194.1| hypothetical protein ESA_03131 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533532|gb|ABU78358.1| hypothetical protein ESA_03131 [Cronobacter sakazakii ATCC BAA-894]
          Length = 295

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 126/254 (49%), Gaps = 15/254 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L +F  V  SGSF+ AAEQL+L+ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKASSDELIIFVAVVESGSFSRAAEQLNLANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   +V  ++   + EL ES   P G LRI     +  +LL   +K F   YP
Sbjct: 61  EEGERYFRRVQQVLQEMAAAETELMESRQTPRGLLRIDAATPVILHLLIPMIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    AAP YL+    P
Sbjct: 121 EVALSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIVAAPDYLERYGVP 179

Query: 181 LSIQELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            +I EL+ H  + F + +     P   ED   L              +  NS  ++ Q C
Sbjct: 180 KNICELNDHVCLGFTEPVSLNTWPVACEDGQLLEIT---------PGMTSNSGETLKQLC 230

Query: 236 VLGSGIALLPDYIV 249
           + G+GIA L D+++
Sbjct: 231 LTGNGIACLSDFMI 244


>gi|269965595|ref|ZP_06179708.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829663|gb|EEZ83899.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|328470054|gb|EGF40965.1| transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 307

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 147/286 (51%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP I++ L 
Sbjct: 67  EYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLISEFLARYPKIEVDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K +D+  D  D  IR+ + + SS+LI ++L        A+P YL     P    +L 
Sbjct: 127 LEDKMVDLVKDGFDLGIRIGE-LTSSNLIAKRLAPCKSVLCASPDYLAEFGTPQKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +     +   ++ ++         P+ + + VN+  +I Q  + GSGIA LP +
Sbjct: 186 SHNCLRYSYF--RGGVEWMFINNGSEYKVLPKGNFI-VNNSEAIRQLLLRGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   +    NL  +ME+   P   +Y  +PE      K++AF +FI
Sbjct: 243 IAGRDFAAGNLKPVMEEYSLPEHAIYAVFPERKHMPLKVRAFIDFI 288


>gi|253995840|ref|YP_003047904.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253982519|gb|ACT47377.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8]
          Length = 296

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 151/288 (52%), Gaps = 10/288 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+++  VF  V ++GSF+ AA Q+ L  S++S +IS LE  +GI L  R  R L+LTE 
Sbjct: 1   MDFNESAVFVKVVQAGSFSEAARQIGLPTSTVSTRISRLEKRLGITLLQRTTRRLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++  ++    L   +  + E+  +P GKL++    DLG +LL   ++     +P++
Sbjct: 61  GAVYYQHAAQGLSYLLEAEAAIDEARQQPQGKLKVTAPADLGDSLLANLIQRAQRDFPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+L ++ ID+  D  D AIR    ++ SSLI + L  IH   +A+  YLK+   PL 
Sbjct: 121 EMELLLTDRYIDLVADGVDVAIRTGD-LRDSSLIAKSLGIIHWELFASKDYLKSA-APLE 178

Query: 183 I-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q++  H+ + F  +        N  + +  P+    ++    NS   +      G GI
Sbjct: 179 VPQDIHAHHCLQFTPMGRDAWTLSNEYSHITIPLPARTMA----NSIGVVKSMAENGQGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ALLP ++ K    + +L+R++ D    +  V+  YP+      KL+AF
Sbjct: 235 ALLPAFVCKQGLISGDLLRVLPDWQGRADPVHLVYPKQRFMPPKLRAF 282


>gi|187927525|ref|YP_001898012.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|309779771|ref|ZP_07674527.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
 gi|187724415|gb|ACD25580.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|308921470|gb|EFP67111.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
          Length = 305

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 141/289 (48%), Gaps = 27/289 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAATRLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S     +E       E    P GK+RI ++ D+G+ L+      F+ LYP+I
Sbjct: 61  GQSLYQVASHALEDIERATTCAGELQDLPRGKVRITSSEDVGRLLVAPVAARFMQLYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARSLGVLRIGLFASPDYLQRRGAPDT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVL-- 237
           +Q L  H           C  DF      +   R +G   +  + V + L+      L  
Sbjct: 180 VQGLADH-----------CCLDFRGTGRGETQWRLVGPDGLKTVAVRARLNADSLIYLET 228

Query: 238 ----GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
               G+GI  LP Y   + + N   P LVR++ D  T    +    P A
Sbjct: 229 LIASGAGIGPLPLYASAVARANAPLPRLVRVLPDYATSGEPINLVTPSA 277


>gi|110832979|ref|YP_691838.1| LysR family transcriptional regulator [Alcanivorax borkumensis SK2]
 gi|110646090|emb|CAL15566.1| transcriptional regulator, LysR family [Alcanivorax borkumensis
           SK2]
          Length = 290

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 140/298 (46%), Gaps = 23/298 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD++  F  V R GSF  AA  L +S S +SR ++ LET++G +L YR  R LTLT+ G+
Sbjct: 4   WDRIEAFVEVVRGGSFARAARHLGVSSSHVSRLVARLETQLGTQLLYRTTRRLTLTDAGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++   +     + +   +P+G LR+      G+  +   + +FL  +P + +
Sbjct: 64  VYFEHCCQLFDGFQEALNAISDFQQQPTGVLRLTCATTFGERFIAPLVNDFLARHPQLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL   N+ +DI  +  D AIR    +  SSLI RKL     +   +P Y      P ++ 
Sbjct: 124 QLDFTNRRVDIVDEGFDVAIRT-GALPDSSLIARKLCPRREYVVGSPGYFSRHARPHTLG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
           EL  HN          C++  +  W   VD   G+ R S +Q     NS  +++     G
Sbjct: 183 ELSGHN----------CLQGSSEQWTFDVD---GQHRHSKVQGNWKGNSGAALLDAARKG 229

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+A LPDY V ++     LV +++        V+  YP     + K++   +F+  K
Sbjct: 230 IGLAQLPDYYVGEDLARGQLVSVLDQYACTHTAVWVVYPRHRHLSPKVRQCVDFLVEK 287


>gi|332529642|ref|ZP_08405597.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040873|gb|EGI77244.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 304

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 140/289 (48%), Gaps = 18/289 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G+FT AAE L L + ++++ +  LE  + +KL  R  R +T+T  G+  +
Sbjct: 7   IRVFARVVEAGTFTKAAESLDLPKGTVTKLVQQLEARLKVKLLNRTTRRVTVTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ V   L+  +  +  +  KPSG+LR+     +   +L   L +F   +PDIQ+ L 
Sbjct: 67  ERTTRVLKDLDDIEASMTNAQAKPSGRLRVDVGTSVAGQILIPALADFYRRFPDIQLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR    +Q  SL+ R+L  + + A A+P Y+K    P    EL+
Sbjct: 127 VTDRPVDLITDNVDCVIR-GGDLQEQSLVARRLGNVPLVAVASPAYIKARGLPRHPSELE 185

Query: 188 K-HNLITF------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + H  + F         + + M+D   L              L VN   ++    + G G
Sbjct: 186 REHTTVNFFSARTGRPYMHEYMQDGKTLEVAGH-------YQLSVNESNALTSAVLAGLG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++ +P +  +    +  LVR++ED   P   +Y  YP     + K++AF
Sbjct: 239 VSHIPTFTAEPLIASGQLVRVLEDWTCPVIPLYVVYPPNRHLSAKVRAF 287


>gi|254227510|ref|ZP_04920942.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262396224|ref|YP_003288077.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151940122|gb|EDN58948.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262339818|gb|ACY53612.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 289

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 150/291 (51%), Gaps = 13/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++L+E G
Sbjct: 3   NWEGVSEFVAVAETNSFTGAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G LR+   +  G+  L   L +FL  YP + 
Sbjct: 63  QLYYQQCKHLVEGLELAELAVTQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L N+ +D+     D AIRL + +Q SS+I ++L +   +  A+P YL+   EP ++
Sbjct: 123 LDLVLTNQKLDLIEQGVDVAIRLGR-LQDSSMIAKRLSSRQNYVCASPMYLERFGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL  H  +  G +      D+ W    ++     R+S  ++ NS  +++     G G+ 
Sbjct: 182 SELGWHQCLV-GSV------DY-WHFKENKRDKSLRVSGRIKCNSGFALVDAAKRGLGLV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY V+   D+  LV ++ D       ++  YP++   + K++   +F+
Sbjct: 234 QLPDYYVQEALDSGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFL 284


>gi|50122824|ref|YP_051991.1| LysR family transcriptional activator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613350|emb|CAG76801.1| LysR-family transcriptional activator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 301

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 140/291 (48%), Gaps = 18/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA +  L++SS+S +IS LE ++G++L  R  R L LT  G +  
Sbjct: 8   MALFALVAECGSFTQAARKAGLAKSSLSLRISQLEQQIGLRLLNRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + +Q     PSG+LRI +   LG  LL     EF   +P + + ++
Sbjct: 68  IHCQEMLQASERADLAIQRLRDNPSGRLRITSPAGLGSTLLARLTAEFHQRFPAVSLDVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  ID+  +  D A R  KP   SSLI R L     +  A+P YL      L  Q+L 
Sbjct: 128 ISDAVIDLVQEGFDVAFRTGKP-HDSSLIGRSLGQTPRYLLASPDYLARHSALLHPQQLQ 186

Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I        L+ +  E + WL      + +  I+    ++ L   +  + G+GI L
Sbjct: 187 QHRCIAHHAWTEWLLHRGSELYRWL------LPDAHIT----DNLLYARECAIAGAGITL 236

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LPD++ +D      LVR++ D    +  +Y  YP    N+  L  F +F+ 
Sbjct: 237 LPDFLCRDEAVSGKLVRVLPDWQAEANELYLVYPSRKLNSPALACFIDFVL 287


>gi|262199468|ref|YP_003270677.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262082815|gb|ACY18784.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 317

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 136/290 (46%), Gaps = 6/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +    G+FT AA +L LS  S SR ++ LE E+G+ LF R+ R +  TE G   +
Sbjct: 8   IEIFCLAYELGTFTAAARELGLSPQSASRALARLEGELGVVLFRRNTRHIQATEAGRTYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   L+  ++EL   + +PSG +R++     G +     L EF   +P + + + 
Sbjct: 68  ETCRSVLKALDAVEMELPGGADEPSGDVRVSVPTTYGHHRFLPLLAEFRRRHPRVFVDVQ 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +DN+ ID   D  D AIR+ K +  +  I RKL    +  +A+P YL+   EP S+ ++D
Sbjct: 128 VDNRTIDFVRDRFDVAIRMGK-LHDAPFIARKLGDFSLGLFASPAYLRARGEPRSLDDID 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F  ++P+  +   W    +     PR +    +  L ++     G GI  + DY
Sbjct: 187 NHECVLF--VMPRTGKILPWSLAGEPRSYTPRAAIRVRHDVLGLISIARAGGGIIQIYDY 244

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +V++      LV I+ D    S      YP        ++A   F+   A
Sbjct: 245 LVENELARGELVEILPDYRGRSRPFSLIYPPEAMRRPPVRALVEFVVHSA 294


>gi|182678261|ref|YP_001832407.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634144|gb|ACB94918.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 299

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 141/285 (49%), Gaps = 10/285 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA +GS + AA +L LS+S +S ++S LE  +G  LF+R  R L+LTE G+ 
Sbjct: 4   DGIMTFVAVAEAGSISEAARRLSLSKSVVSERLSDLERSLGTVLFHRTTRKLSLTEDGAA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +   +E    +L E     SG LR++  +  G+  L   L  FL  +P I + 
Sbjct: 64  FFERAARITRDVEEAAADLAERRGTLSGPLRLSAPVTFGRMHLGPALYPFLAQHPRIAMT 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD++ +D S +  D  +R  + ++ S L+   L +   H  A+P YL     P S+ E
Sbjct: 124 LELDDRRVDASAEGYDAVVRHGR-LEDSRLMAWCLASSRRHLVASPSYLIRHGTPKSLAE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L++H  I + +   +   D+ ++      I    I  L+VN+   +    V G GIALLP
Sbjct: 183 LEQHRGIFYTN---RGAADWRFMGPEHATIVRGTIG-LRVNNGDMMRDAAVAGLGIALLP 238

Query: 246 DYIVKDNPNLVRI-MEDV---ITPSFTVYFCYPEALKNTGKLKAF 286
            +IV        + + DV   + P F VY  +PE  + + KL+A 
Sbjct: 239 SFIVGAEVRTAALTVIDVGAEVEPEF-VYIAHPEGRRPSAKLRAL 282


>gi|116249208|ref|YP_765049.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253858|emb|CAK12253.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 298

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 138/290 (47%), Gaps = 11/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + V   V  SGSF  AAE + LS S +SR IS LE  +G++L  R  R + LT+ G++
Sbjct: 8   NGVSVLAAVIESGSFARAAELMGLSASGVSRAISRLEGRIGLRLLDRTTRTMRLTDDGAR 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++  + +   +E        +     G+LR+       + +L   L  FL  YPDIQI+
Sbjct: 68  FYQQVAPLLSGIEEAAQTAVGARQAVRGRLRVNVDPYFSRLVLGPRLGAFLDRYPDIQIE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I  N+  D+  D  D A+R  +P Q  SLI R L+   +   AAP Y++    P   Q+
Sbjct: 128 VITRNEIGDLVADGMDVAVRFGEPAQ-RSLISRLLMQTRVITIAAPVYIERHGRPGRPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243
           L +H  I F D  P     F W L   +  +     S + VN   + +  C+ G GIA  
Sbjct: 187 LSEHTCIQFQD--PLTARPFEWELRRREEVVSIETRSRILVNDAGTTLATCLAGIGIAQV 244

Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               + DY+  +N  LV +  D    +F +Y  YP       K++AF +F
Sbjct: 245 FSLGMADYL--NNGQLVNLFPDWSDETFPLYAFYPSRQHVPAKVRAFIDF 292


>gi|325277045|ref|ZP_08142705.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097828|gb|EGB96014.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 273

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 15/280 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W+ +  F  VA SG FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TL+
Sbjct: 1   MSNRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEERLQTRLLYRSTRRVTLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP
Sbjct: 61  EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + L+N  +D+  +  D AIRL + +  S L+  +L    M+  A+P YL+    P
Sbjct: 121 QLRVDVELNNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLERYGRP 179

Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238
            S+ EL +HN LI   D          W    D R I +      + NS  +++   + G
Sbjct: 180 HSLSELARHNCLIGSSD---------AWALQQDGREISQRVQGNWRCNSGQAVLDAALQG 230

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            G+  LPDY V +   +  LV ++E    P+  V+  YP+
Sbjct: 231 MGLCQLPDYYVLEHLHSGALVSLLEGHQPPNTAVWALYPQ 270


>gi|108762266|ref|YP_632529.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108466146|gb|ABF91331.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622]
          Length = 293

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 147/288 (51%), Gaps = 11/288 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L VF  V ++GSFT AA  L + +S++SR++S LET VG +L  R  R L LT+ 
Sbjct: 1   MDLNELLVFARVVQAGSFTAAARGLRMPKSTVSRKVSELETRVGAQLLQRTTRKLRLTDV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  + E  ++ +      P G LR+ T +    + +   +  F+  YP++
Sbjct: 61  GRTYYEHCARIVAEAEQAELAVTRMQAAPHGLLRVTTPLTF--SFIGPLVSTFIKQYPEV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++++  ++++D+  +  D AIR  + +  SSL+ R+L  +     AAP YLK    P +
Sbjct: 119 QLEMVCTDRNVDLVAEGFDLAIRAGR-LADSSLMARRLGIVERVVIAAPSYLKARGTPKA 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L+KH+ + FG      +E+  W L + +R +     + + VN    +      GSGI
Sbjct: 178 PKDLEKHDCLLFG----AGLENNVWTLHSGNRSVDIKVPARIVVNEPDMLYAVARAGSGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ALLP+           L RI+ D  +    V+  YP    ++ K+ AF
Sbjct: 234 ALLPNLHFTSELAAGRLQRILPDWSSTGAPVHAVYPSTRHHSPKVMAF 281


>gi|224823963|ref|ZP_03697071.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603382|gb|EEG09557.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 313

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 136/273 (49%), Gaps = 11/273 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           +RVF  V  +GSF  AAE++ LS++ +++ ++ LE ++G++L +R  R L+LTE G+  L
Sbjct: 7   MRVFQTVTEAGSFAGAAERMDLSRAMVTKYVAALEQQLGVRLLHRSTRRLSLTEVGADYL 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV S +    E   +  ++S   P+G LRI  ++  GQ  L   L EF   YP+I + L
Sbjct: 67  QRVASILAQVDEAAAVASRQSQT-PAGTLRITASVAFGQRRLGTLLTEFHRRYPEISVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQE 185
           +L N+ ID+  +  D A+R        +LI R L+  I+    AAP YL+    P +  +
Sbjct: 126 MLTNRHIDLVEEGYDLALRTSLHASEENLIARLLLGPIYSTLLAAPSYLEKHGTPQTPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     + +E   W       P+       L  N    ++     G GIAL 
Sbjct: 186 LVHHNCLRYS----RPLESNTWSFGPPQSPVTVRVSGSLSTNDGAVLIDAARAGLGIALQ 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           P  +V ++     LV ++ D   PS  +Y  YP
Sbjct: 242 PSVLVSEDLASGRLVELLPDWEKPSTALYALYP 274


>gi|70728581|ref|YP_258330.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342880|gb|AAY90486.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 299

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 143/291 (49%), Gaps = 15/291 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA    FT AAE+L +S S ISRQ++ LE  +  +L YR  R +TLTE G 
Sbjct: 6   WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQVARLEERLQTRLLYRSTRRVTLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMSLYPQLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P YL+    P S+ 
Sbjct: 126 DIELSNRPLDLVHEGLDLAIRLGR-LQDSRLVATRLAPRRMYLCASPSYLERYGRPHSLS 184

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL +HN LI   D+         W   +D R   +      + NS  +++   + G G+ 
Sbjct: 185 ELSRHNCLIGSSDI---------WQLELDGREFSQRVQGNWRCNSGQAVLDAALQGVGLC 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY V +   N  L+ ++E    P+  V+  YP+    + K++   +++
Sbjct: 236 QLPDYYVLEHLQNGTLISLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286


>gi|218529313|ref|YP_002420129.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218521616|gb|ACK82201.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 298

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ L  F  +AR G    AA +L +  +++SR+I+ LE  +  KLF R + G  LTE 
Sbjct: 2   FDWNDLTFFLELARHGRLMPAARRLKVDNTTVSRRIAELERGLDTKLFQRCSDGFLLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G KL  +   +  K+ +   EL  S   +P+G++R+A+   +    L     EF    P 
Sbjct: 62  GHKLFVIAEAIEQKMLSVPDELGLSDGAEPAGRVRVASMEGIAAFYLSAKFAEFAAAMPG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L+ +   I+++   AD ++    P Q   L  R++    +  +AA  YL     P 
Sbjct: 122 IVIELVTERHLINLTKREADISVSFVPP-QGPRLKVRRVGEFRLALFAAERYLAAHGRPT 180

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +L  H+ + +  DL+   +E  +WL  V +P         +  S  +       G+G
Sbjct: 181 TRADLQGHDFVDYVDDLV--AIEPVHWLLEVLKPTN----VVFRSTSMAAQQTAVAAGAG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + LLP +  K NP L+ ++ D +     +Y    E +++ G+++A   F+
Sbjct: 235 LGLLPLFSAKTNPALIPVLADDVVVQRELYLGVHEDIEHAGRIRAVTRFL 284


>gi|59711484|ref|YP_204260.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|197335343|ref|YP_002155639.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|59479585|gb|AAW85372.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
 gi|197316833|gb|ACH66280.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 301

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 146/290 (50%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +   V  SGSFT AA  L +++S++SR+++ LE  +G+KL  R  R L LT++
Sbjct: 2   MDLNNITLLNQVVDSGSFTQAATNLGMTKSTVSRKLAELEEHLGVKLITRSTRKLGLTQE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++ + +V   ++ T++EL  +     G L +A  +++G N++   +  FL  YP++
Sbjct: 62  GEIFYQASVKVLDIMQQTELELTANQNLIRGHLNLAMPVEIGHNVMSDYINSFLKHYPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CRE 179
            I L + N+++DI  D  D  +++ + I  SSL+ R +        A+P YL N    + 
Sbjct: 122 SINLEMTNREVDIIGDNIDLYVQIGE-INDSSLVARTIDFSERIIVASPEYLNNYGYIQT 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  +Q       +     +P       +   VD+ I       L+VN+  +    C+ G 
Sbjct: 181 PEDLQAPHHQIRVVNAVKVPNL-----YFNQVDKAIRVNLPYRLKVNTVTACKSACLSGL 235

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GIA LP++I ++   N  L+RI+ D   P   +   +P+      +L+AF
Sbjct: 236 GIASLPEFICREHINNGELIRILPDWDLPRVAISLVFPQNKLLPKRLRAF 285


>gi|34496175|ref|NP_900390.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34102029|gb|AAQ58396.1| probable transcriptional regulator LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 288

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 130/274 (47%), Gaps = 8/274 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR+G+   AA+QL + Q+++ R++   E E+G +LF R  +G  L+E 
Sbjct: 1   MNWDNARYFLSLARAGTLRAAAQQLGVDQATVGRRLQAFEAEIGSRLFLRTPQGYQLSES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L      +    +    +   S  + +G +RIA T  + +  +   L E    +P++
Sbjct: 61  GAMLLADAERMEAAADAFSRKAAHSDRQLAGPVRIAATDTVAEAFIIPALAELSRRHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +  L+      D++    D AIR  +P +   L+ RKL  I M  YA+P YL     PL 
Sbjct: 121 EFTLLTGLSIRDVAAGEVDFAIRSLRPDKGEVLV-RKLAAIDMSLYASPDYLARRGRPLP 179

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                 H L+ F  D +P+     +W       + + RI+ LQ NS LS+ Q  + G GI
Sbjct: 180 GDGFAGHELLMFPRDTVPR-----HWQRLCGESVDQARIA-LQANSQLSLRQAALAGMGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPE 275
           A+L  +I   +  L R+  D   P       +P+
Sbjct: 234 AMLSCFIADRDAGLERVWPDRTDPVDMWLVLHPD 267


>gi|90414572|ref|ZP_01222546.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90324379|gb|EAS40945.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 306

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 150/296 (50%), Gaps = 13/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FD + L +F  V    SFT AA +L +++S+ISR+I+ LE  +G +L  R  R L LT
Sbjct: 8   IGFDLNTLEMFARVVECHSFTQAAAELEITKSTISRKIAELEKHLGARLLTRSTRTLVLT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++  + +   +E T++E+  S     G L I   +++G  LL   +KEF+ L+P
Sbjct: 68  KEGETFYQSCTHIIELIEQTELEVMASHDLIRGPLNIVMPVEVGNGLLGRCMKEFMKLHP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L L N+ +D+  +  D  +++ + +  SSLI R          A+P YL     P
Sbjct: 128 QVTIHLELSNRKVDLIAEGIDLKVQVGE-LDESSLIARTFHYSTRILVASPEYLAEYGTP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L   +         + +++ + + T D+ +         VN+  S ++ C+ G G
Sbjct: 187 QLLSDLKAPH---------QQIKNSSSVRTADKNVLAGLPYRFNVNTINSSLEACLDGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P++I K++     LV ++ DV +    + F YPE    + +L+ F +F  ++
Sbjct: 238 ITFMPEFICKEHIVTGRLVHVLPDVYSAQIPISFVYPERKLISKRLREFIDFSIMR 293


>gi|83944242|ref|ZP_00956697.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
 gi|83953283|ref|ZP_00962005.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83842251|gb|EAP81419.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83844786|gb|EAP82668.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
          Length = 301

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 139/291 (47%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L EFL  +PDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPALSEFLADFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPAYFEKYGRPEKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     M    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NDHKLLHYSNQSSGNM----WKLT--SPSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  D     LV   + D+   +  +Y  YP       K++AF +F+
Sbjct: 239 YLPSFLYADAMEKGLVEDAIPDLPLETQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|300705096|ref|YP_003746699.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299072760|emb|CBJ44113.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 305

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 142/286 (49%), Gaps = 21/286 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAAARLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S     +E       E    P GK+R+    D+G+ L+   +  F+  YPDI
Sbjct: 61  GQSLYQVASHALEDIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMREYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQRQGAPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
           +++L  H+ + F         +  W     R +G   +  + V + L+      L     
Sbjct: 180 VRDLGHHSCLDFRG---TGRGETQW-----RLVGPDGLKTVAVRARLNADSLSYLETLIA 231

Query: 238 -GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
            G+GI  LP Y   + + N   P LVR++ D  T    ++   P A
Sbjct: 232 SGAGIGPLPLYAGGVARANAPLPRLVRVLPDYATSGEPLHLVTPTA 277


>gi|330830944|ref|YP_004393896.1| LysR family transcriptional activator [Aeromonas veronii B565]
 gi|328806080|gb|AEB51279.1| LysR-family transcriptional activator [Aeromonas veronii B565]
          Length = 290

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 144/292 (49%), Gaps = 14/292 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + + +F  V   GSFT AAE L + +SS+S++IS LE+++G++L  R  R L+LT 
Sbjct: 3   NVDLELMGLFATVVEQGSFTRAAELLGMPKSSVSQKISRLESQLGVRLLQRTTRRLSLTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG         +     +  + +      P+G++RI      G  LL   L EF  LYP+
Sbjct: 63  QGELYVEHCQGLLALARSANLAMARLRSAPAGRVRITAPEATGTLLLGRILAEFRALYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ +D+  +  D A+R   P++ SSLI R++  +  H  AAP YL     P 
Sbjct: 123 VVLELTLSDEQLDLVGEGYDLALR-AAPLKDSSLICRRIGEVARHLVAAPAYLAAHGMPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + EL ++  +    +    + +  W     RP G    +C+  NS L++ +  +   GI
Sbjct: 182 QLSELGRYACLVHSAMPVWPLLEGGW-----RPQG----ACVS-NSLLALREMALHDGGI 231

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLP ++ + +     L +++ D   P+   Y  YP        L+   +F+
Sbjct: 232 ALLPHHVCEGDLAAGRLQKVLPDQPIPANPFYLIYPSREHLAPALRTLMDFV 283


>gi|159042679|ref|YP_001531473.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157910439|gb|ABV91872.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 302

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +     +P+G LRI+   D G   L   L  FL  +P+IQI +
Sbjct: 66  YDRARHVLNDAGEADAMVNAMQSEPNGLLRISVATDFGVKHLSPVLAGFLHQFPEIQINM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+   ++ S+L  RKL T      AAP YL+    P  I +L
Sbjct: 126 VLNNRYVELISEGFDLALRV-GDLEDSTLRARKLATTSKRMIAAPSYLEKFGHPKRIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
             H L+ + +     +    W  T   P GE R       L VN   S++     G GIA
Sbjct: 185 SDHKLLHYSNQSSGNL----WKITA--PSGEKRQVRTGGWLTVNDGQSLLNAAKTGLGIA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++ +D     ++V ++ D+      +Y  YP       K++AF +F+
Sbjct: 239 YLPSFLFEDALGRGDVVEVLPDLPYDDLGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|227327903|ref|ZP_03831927.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 297

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 6/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L LSQS++S  I GLE  +G++L  R  R +  TE G
Sbjct: 5   NFNDLISFLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL       +  +E+  I L +   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  EKLAHSLGPHFADIESELIALGDMRERPAGNIRITAGEHAVDSVLWPVLKPFLANYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI +   D  IRL + ++   +  R    + M    +P+Y      P + 
Sbjct: 125 VEITMDNALADIVLGRFDAGIRLGEQVEKDMIAVRVAPEMSMAVVGSPNYFARNLAPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W      R I       L +NS    +   ++G G+A
Sbjct: 185 QDLQHHRCINM--RLPTMGGIYAWEFEKNGREIKVRVEGQLTMNSLRQRIDAALIGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P+  V+D+     L R++ +  +P    Y  YP   ++T     F
Sbjct: 243 YVPEDAVRDDIASGRLTRVLTEWCSPFPGYYLYYPSRKQHTTAFSLF 289


>gi|126733985|ref|ZP_01749732.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           CCS2]
 gi|126716851|gb|EBA13715.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           CCS2]
          Length = 295

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 139/290 (47%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   +
Sbjct: 1   MEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V +        +      PSG LRI+   D G N L   L +FL  +PDI + + 
Sbjct: 61  DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLTEFPDITVNMA 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P  I +L+
Sbjct: 121 LNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTDTTKRMIASPAYFEQYGRPEKIDDLN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243
           +H L+ + +     +    W  T   P GE R       L VN   S++  C+ G GIA 
Sbjct: 180 EHKLLHYSNQANSAV----WKLTA--PSGEKRQVRTAGWLTVNDGQSLLNACIGGLGIAY 233

Query: 244 LPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++  D     LV   + D+   +  +Y  YP       K++AF +F+
Sbjct: 234 LPSFLYADAMQQGLVEEAIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFL 283


>gi|89899616|ref|YP_522087.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344353|gb|ABD68556.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 312

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 135/283 (47%), Gaps = 17/283 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D + L +F  VA  GSF+ AAE++ L +S++SR+++ LE  +G +L  R  R  +LTE
Sbjct: 14  GIDPNDLLIFANVAELGSFSRAAERMGLPKSTVSRRLAALEQRLGERLLLRTTRRQSLTE 73

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     +V  ++E      +     PSG+LR++   D    LL   L  F+ LYP 
Sbjct: 74  FGLQLLEHARQVVSEVEAVTALSERRQATPSGRLRVSMPSDFANLLLADTLAAFIALYPA 133

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ++L L  + +D+  +  D A+R+      +SL  R+L       YAAP YL    EP 
Sbjct: 134 IQLELDLSPRRVDLLGEGFDVALRMGNLPDDASLAARRLAVFSFGLYAAPSYLAEHGEPA 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCL-----QVNSYLSIMQYC 235
              +L +H  I    ++    E  +W LA      GE R   +       N+   +++  
Sbjct: 194 DPDDLVRHAAIR---MLQANGEAASWTLAQ-----GEQRWQGVPPGRASANAPELLIKLA 245

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
             G+GIA +PDY    +     L R++     PS   +  +PE
Sbjct: 246 CAGAGIAAVPDYFAAPDVRRGALRRVLPGWCLPSHPAWAVFPE 288


>gi|242239561|ref|YP_002987742.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242131618|gb|ACS85920.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 335

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 149/293 (50%), Gaps = 13/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  L VF  V  SGSF+ A ++L+LS+S++S+++S LE  +G++L +R  R L+LTE G
Sbjct: 3   DFSSLPVFVAVVESGSFSAAGKRLNLSKSAVSKRLSQLEERLGVRLLHRTTRQLSLTEAG 62

Query: 64  SKLHRVTS---EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           S  +       ++  + E    +LQE   +P G LR++  +  G   +   L  FL  YP
Sbjct: 63  SDYYDYAQRALQLAQQAEDAVTQLQE---RPQGTLRVSAPMAFGLRHISPLLPIFLHRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L++D++ +D+  +  D A+R+ + +  SSLI R+L        AAP YL+    P
Sbjct: 120 EVSVDLLMDDRVVDLVGEGFDLAVRIGQ-LPDSSLIARRLAPCFSVLCAAPDYLQRTDVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I  L  HN + +  L  K   ++++    D P+        + N+  ++    + G G
Sbjct: 179 QHIDALKHHNCLFY--LYFKGGVEWSFEGP-DGPVRFQPHGNYRANNSEALFDALLAGVG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +P +IV        LV ++     P  ++Y  YPE      K++ F +F+
Sbjct: 236 ICQVPKFIVGPALSEGRLVEVLPQYRLPEHSIYAVYPERRHLPAKVRVFIDFL 288


>gi|90577236|ref|ZP_01233047.1| putative transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
 gi|90440322|gb|EAS65502.1| putative transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
          Length = 301

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 144/295 (48%), Gaps = 18/295 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +FY +   GSF+ AAE + L++S +S++I+ LE  +G++L YR  R LTLTE G  
Sbjct: 5   NNLLLFYHLIDKGSFSKAAEHIGLTKSVVSKRITALEQALGVQLIYRTTRKLTLTEAGDV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    EVY+ ++  +  +       +GK+RI      G+ +L   +  F   YPDI I+
Sbjct: 65  FYHHAREVYNAVQNAEDAMSGLGESLTGKIRITVPTISGELILPEAIAAFSRQYPDIHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+  +  D AIR    +  SS I R+LV       A+P Y+K    P    +
Sbjct: 125 MDLDNRFVDLVQEGFDIAIR-TGAMPDSSFIARQLVQARWVICASPCYIKQYGIPTQPYD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GS 239
           L+KHN + +        E   WL  ++  +G   I  L+V    +      L      G 
Sbjct: 184 LEKHNCLGYSFQETGANE---WL--IEDTLG---IHTLKVKGNFTTNNASALRGAALHGQ 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+  +P  +V ++    +LV ++ D +  S  +Y  YP   +   K+K F   I+
Sbjct: 236 GLVYIPKVLVAEDLKKGDLVEVLTDYVAKSLGIYAVYPYTKQQPMKVKLFIEHIY 290


>gi|227328001|ref|ZP_03832025.1| LysR family transcriptional activator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 303

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 140/291 (48%), Gaps = 18/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA +  L++SS+S +IS LE ++G++L  R  R L LT  G +  
Sbjct: 8   MALFALVAECGSFTQAARKAGLAKSSLSLRISQLEQQIGLRLLNRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + +Q     PSG+LRI +   LG  LL     EF   +P + + ++
Sbjct: 68  IHCQEMLQASERADLAVQRLRDNPSGRLRITSPAGLGSTLLARLTAEFQQRFPAVSLDVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  ID+  +  D A R  KP   SSLI R L     +  A+P YL      L  Q+L 
Sbjct: 128 ISDDVIDLVQEGFDVAFRTGKP-HDSSLIGRSLGQTPRYLLASPDYLARHAALLHPQQLQ 186

Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I        L+ +  E + WL      + +  I+    ++ L   +  + G+GI L
Sbjct: 187 QHRCIAHHAWTEWLLHRGSELYRWL------LPDSHIT----DNLLYARECAIAGAGITL 236

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LPD++ +D      LVR++ D    +  +Y  YP    N+  L  F +F+ 
Sbjct: 237 LPDFLCRDEAVSGKLVRVLPDWQAEANELYLVYPSRKLNSPALACFIDFVL 287


>gi|260432167|ref|ZP_05786138.1| LysR substrate binding domain protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415995|gb|EEX09254.1| LysR substrate binding domain protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 301

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 138/293 (47%), Gaps = 18/293 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFANVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L  FL  YPDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSGFLAAYPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + +  S+L  RKL        AAP Y++    P  I +L
Sbjct: 126 VLNNRYVELISEGFDVAVRIGE-LDDSTLRARKLTETVKRMVAAPSYIERFGRPAKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ +       +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NEHKLLHYSSQSSGNV----WRLTA--PSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            LP Y+  D     ++++ +  PS       +Y  YP       K++AF +F+
Sbjct: 239 YLPSYLYADALKAGKVVDAM--PSLPDEVQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|116052216|ref|YP_788940.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587437|gb|ABJ13452.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 307

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 144/296 (48%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R L LT  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAETLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +L+  +  L  +++ P G+LRI     L + LL   L EF   YPDIQI
Sbjct: 64  AYYERVVRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +D+  +  DC IR  + ++  SL+ R++  + +  YAAP YL+    P   +
Sbjct: 124 DLGVSDRLVDLIDENVDCVIRGGE-LRDQSLMARRVGDLQLGVYAAPAYLQRAGVPSHPR 182

Query: 185 EL-DKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL D H  I        G  +P  M          R  G   ++    N+YL+     + 
Sbjct: 183 ELEDSHQRIVGFLWARTGKALPYAMHRGE---ESLRVAGRHVLAVDDGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP Y+ ++      L+ + ED       +Y  +P     +GKL+ F  ++
Sbjct: 237 GLGILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWV 292


>gi|330448657|ref|ZP_08312305.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492848|dbj|GAA06802.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 292

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 140/289 (48%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  VA   SF  AAE   +  S++SR+IS LE  +G++L +R  R + LTE G  
Sbjct: 5   DDMALFVEVANVMSFRQAAEITGVPNSTLSRRISALEKAIGLRLLHRTTRKIELTEAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  + +    +L + +  PSG +R++  ID   + +   L EF   YP+I+++
Sbjct: 65  YYERCRRIVEEAKLAHQQLSDIAENPSGTVRVSAPIDFATHFIAPLLPEFTKQYPEIELE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ +D++ +Y D AIR  +  +SS+LI RKL   H + Y +P YL    EP S  E
Sbjct: 125 FDLSSRRVDMTSEYFDVAIRAGES-ESSNLIARKLANFHHYIYGSPAYLAQYGEPQSPDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +H   +        ++  +W         + ++ S L VNS   I Q  +L  G+ LL
Sbjct: 184 LTQHQCFSI-------VKSAHWALHSQEKSADIKVNSKLFVNSIGMIKQLTLLNMGLGLL 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  ++ D      L RI+ +       +Y    E      K + F NFI
Sbjct: 237 PQEMITDELAQGTLKRILPEWQGAPVPIY-AITETRLLPAKTRCFINFI 284


>gi|229588826|ref|YP_002870945.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360692|emb|CAY47550.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 298

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA    FT AAE+L +S S ISRQ++ LE  +  +L YR  R +TLTE G 
Sbjct: 6   WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQVARLEERLQTRLLYRSTRKVTLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMALYPQLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S ++  +L    M+  A+P YL     P S+ 
Sbjct: 126 DIELSNRPLDLVHEGLDLAIRLGR-LQDSRMVASRLAPRRMYLCASPSYLARYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +           D   LA   R   +      + NS  +++   + G G+  L
Sbjct: 185 ELSRHNCLIGSS-------DIWQLAQDGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V +   +  LV ++E    P+  V+  YP+    + K++   +F+
Sbjct: 238 PDYYVLEHLHSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDFL 286


>gi|323525077|ref|YP_004227230.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382079|gb|ADX54170.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 305

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 142/303 (46%), Gaps = 16/303 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S  ++SR ++ LE  +G +LF R +R L LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARAMGVSVPTVSRAVARLEERLGARLFNRTSRQLALTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     +VY   E  +   +E S +P G +R+A  +  G   +   L +FL  YP++ 
Sbjct: 66  RTVCEKAGDVYRLAEDAENAAREMSAEPRGLIRLAVPMSFGVRWVAPLLPDFLRRYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D A+R+   +  SSL+ R+L  +     A P YL+ C  PL  
Sbjct: 126 VDLHLSDATVDLVAQGFDAALRI-AALPDSSLVARRLCAVSQLLVATPGYLQRCGRPLHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGS 239
           +EL     +T+     +   D  W  T D   GE         L+VN+  +++   + G 
Sbjct: 185 RELAARPCLTYAY---RARSDV-WRFTND--AGEEEAVTPAGPLRVNNADALLPTLLAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKA 294
            IA LPD++  +   +  L  I+         +YF  P A     K+ A  +F+   L A
Sbjct: 239 AIAELPDFMASEYLADGRLEAILSGWHLTRGGLYFVTPSARARPAKVAALADFLAAHLSA 298

Query: 295 RDW 297
             W
Sbjct: 299 PAW 301


>gi|294139953|ref|YP_003555931.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293326422|dbj|BAJ01153.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 299

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 152/297 (51%), Gaps = 14/297 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++++VF+ V  SGSF+ AA+ LH++ SSI+R I  LE ++   LF R  R L LTE+GS 
Sbjct: 3   EQIKVFHQVVDSGSFSQAAQVLHMAPSSIARNIDSLEAQLKTTLFKRSTRQLILTEEGSY 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ + ++    +    E++ +   P G LRI+     G   L   + EFL +YPD+Q+ 
Sbjct: 63  FYKQSGKLVEDADILLAEMRGAQDTPQGLLRISVFESFGNLCLAPIIPEFLQMYPDVQVD 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LDNK +D+  D  D AIR+  P Q S L  RKL+       A+P Y++  +      +
Sbjct: 123 LDLDNKLVDLHSDNVDLAIRIGVP-QDSGLKARKLLENRTLLTASPIYVEQHKTITQPSD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244
           L +HN +    LI +  +  +W     +   +  ++   ++   S +    L G G+ LL
Sbjct: 182 LGEHNCL----LISQERQRNHWYFNKGKSKRKVSVTGNLISKGGSPLLIAALKGCGVLLL 237

Query: 245 PDYIVK---DNPNLVRIMEDVI-----TPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +++VK   ++ +LV I+ D         S  +Y  Y +A      ++AF +F+  K
Sbjct: 238 SEWMVKPYLESKDLVAILPDWTVNHRENGSGEIYAIYKDAQYPKPHIRAFLDFMVNK 294


>gi|225024636|ref|ZP_03713828.1| hypothetical protein EIKCOROL_01513 [Eikenella corrodens ATCC
           23834]
 gi|224942599|gb|EEG23808.1| hypothetical protein EIKCOROL_01513 [Eikenella corrodens ATCC
           23834]
          Length = 298

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 141/294 (47%), Gaps = 16/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  SGSFT AAEQL +S    S+ ++ LE  V  +L YR+ R L+LTEQG   +
Sbjct: 7   MKVFCQVVHSGSFTRAAEQLDISVPMASKHVAHLEKSVNARLLYRNNRRLSLTEQGEAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R        LE        S+ +  G+LR++  +     +  G + E+   YP++ + L 
Sbjct: 67  RDCLSALDLLEQAAARAAGSTARVQGRLRVSIPVWFANPVFAGWITEYRRRYPEVSLHLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N  +++  D  D A+RL K   + +LI R L  I  H  AAP YL     P + Q+L 
Sbjct: 127 LTNHSVNLDGDGEDVALRLSKQ-PAENLIARALAKIDFHLVAAPAYLAEHGTPAAPQDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVLGSGIAL 243
           +H  I     +P    D + L    R  GE     LQ     N+   + Q    G+GI  
Sbjct: 186 QHQAI-----LP-SYTDVSALTLQGR--GESHNIELQAAIHSNNTQMLYQLVCAGAGIGY 237

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP+++++ +     L R++ D  T     Y  Y +    + K+++F +F+  KA
Sbjct: 238 LPEWLLRADLQTGRLRRLLPDHRTAPVPFYAVYTQRKLLSAKVRSFIDFMVEKA 291


>gi|261251307|ref|ZP_05943881.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260938180|gb|EEX94168.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 315

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 148/293 (50%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KLF R  R ++LTE G
Sbjct: 29  NWEGVSEFVGVAETQSFTAAANKLDTSVAQISRRVSALEERLAVKLFNRTTRKVSLTEAG 88

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P G L++   +  G+  L   L +FL LYP + 
Sbjct: 89  QLYYQQCKHLVEGLELAELAVTQMQSTPKGLLKVTAPVTYGEQHLAPLLHQFLELYPQVN 148

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L N+ +D+     D AIRL + +Q SSLI ++L +  ++  A+P YL    EP ++
Sbjct: 149 LDLMLTNQKLDLIELGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPDYLDRFGEPHTL 207

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +  G +      D     ++ R  G  RI C   NS  +++     G G+A 
Sbjct: 208 SELSNHQCLV-GSVEYWRFRDTKGEKSM-RVSG--RIHC---NSGYALLDAAKRGLGLAQ 260

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LPD+ V+   D   LV ++ +       ++  YP+    + K++   +F+  K
Sbjct: 261 LPDHYVQEALDTGELVEVLTEYRDEREGIWALYPQNRNLSPKVRLLIDFLAEK 313


>gi|257487058|ref|ZP_05641099.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330894617|gb|EGH27278.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330985133|gb|EGH83236.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009304|gb|EGH89360.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 298

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA++L +S S ISRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S ++  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+ + N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286


>gi|241113206|ref|YP_002973041.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861414|gb|ACS59080.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 298

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 136/290 (46%), Gaps = 11/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + V   V +SGSF  AAE + LS S +SR IS LE  +G++L  R  R + LT+ G++
Sbjct: 8   NGVSVLAAVIQSGSFARAAESMGLSASGVSRAISRLEGRIGLRLLDRTTRTMRLTDDGAR 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +   +E        +     G+LR+       + +L   L  FL  YPDIQI+
Sbjct: 68  FYEQVAPLLSGIEEAAQTAVGARQAVRGRLRVNVDPYFSRLVLGPRLGAFLDRYPDIQIE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I  N+  D+  D  D A+R  +P Q  SLI R L+   +   AAP Y++    P   Q+
Sbjct: 128 IITRNEIGDLVADGMDVAVRFGEPAQ-RSLISRLLMQTRVITIAAPAYIERFGRPSRPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243
           L +H  I F D  P     F W L   +  +     S + VN   + +  C+ G GIA  
Sbjct: 187 LSEHTCIQFQD--PLTARPFEWELRWGEEVVSIETRSRILVNDAGTTLATCLAGIGIAQV 244

Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               + DY+   N  LV +  D    +F +Y  YP       K++A  +F
Sbjct: 245 FSLGMADYL--SNGQLVNLFPDWSDETFPLYAFYPSRQHIPAKVRALIDF 292


>gi|167565098|ref|ZP_02358014.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167575012|ref|ZP_02367886.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 296

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +TE G 
Sbjct: 3   FDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTELGQ 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + H   + +  ++  T+  +        G L+I+  +  G   L   + EFL+ +P +++
Sbjct: 63  EFHARATRILAEIADTEEAMSARRRDLRGTLKISAPMSFGITHLSPLIAEFLVQHPAVRL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y ++   P +  
Sbjct: 123 HLELSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRSRGTPATPA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L +H  + +G           W   +D   G  R       L  N+   I    V G G
Sbjct: 182 DLHRHACLLYGQ-----EGRAGWEFVID---GARRTFEVQGALLANNGEVIRDAAVAGLG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IALLP +IV    D   LV ++E        V   YP+  ++    + F  FI
Sbjct: 234 IALLPHFIVAPPLDAGTLVTVLEPFAQSPLPVNAVYPQHRQDMAACRVFLGFI 286


>gi|154252670|ref|YP_001413494.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gi|154156620|gb|ABS63837.1| transcriptional regulator, LysR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 310

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 150/299 (50%), Gaps = 12/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   V+  V   G FT AA+ L LS+S +SR ++ LE E+G++L  R  R +++T
Sbjct: 1   MAVDLNGYAVYAKVVELGGFTAAADALGLSKSMVSRHVATLEDELGVRLLNRTTRRISVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQ--ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           E G  +      +  +      E    E +V+  G LR+   +  G   L   + EFL  
Sbjct: 61  EAGGVVFERAQRIVAEAAEAANEATCVEGAVR--GLLRVNAPMTFGIRQLGPVMPEFLAR 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YPD+ + L L+++ +D+  +  D ++R+   +  SSLI R+L  +  H   AP Y +   
Sbjct: 119 YPDLNVDLTLNDRRVDLIEEGFDVSLRV-SALTDSSLIARQLAPVERHIVGAPGYFEKHG 177

Query: 179 EPLSIQELDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P S  +L  H+ + +  L  P  +E  +     ++   + R+ C   N+  ++++    
Sbjct: 178 VPKSPTDLAGHDFLLYTLLARPTHLEMTHEDGRREQVEVKGRMFC---NNADAMLETIAA 234

Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+G+ALLPD+I  D+      VR++ED   P  T++  YP +     K++AF +F   K
Sbjct: 235 GAGLALLPDFIGCDHMKSRAFVRVLEDWSMPPLTLHVLYPHSRHLPAKVRAFVDFAVEK 293


>gi|320323097|gb|EFW79186.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329631|gb|EFW85620.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330878093|gb|EGH12242.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 298

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA++L +S S ISRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S ++  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+ + N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286


>gi|91786426|ref|YP_547378.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91695651|gb|ABE42480.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 307

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 147/297 (49%), Gaps = 12/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  +GSF+  A+++  +QS+IS+Q++ LE E+G KL  R  R L+L+E+G +  
Sbjct: 7   MKTFVRVVEAGSFSAVADEMRATQSAISKQVAALEKELGTKLLIRTTRSLSLSEEGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   + +L++   + SG LR+A ++  G+  L   +K F+  +  ++I L 
Sbjct: 67  EQARRLVGEIAEAESDLRKGEGRLSGWLRVAASVGFGRLKLMPLVKAFMDTHAGVKIDLR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL----KNCREPLSI 183
           L +  ID+     D ++R+ + +  S LI R++ T      A   YL    K  + P++ 
Sbjct: 127 LHDGFIDLIEQGIDISVRIGE-LPDSGLIARRVGTSQRMLLAHRDYLRSLPKGVKAPVNP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239
           ++L  HN + + +L  + +  F   A    P+G  +       +Q NS   I      G 
Sbjct: 186 EDLSNHNCVVYTELATRNLWAFEAGAGASEPLGTVKAVRVGGRIQTNSSEVIRSAVTAGM 245

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI   P ++ +       +VR+M D  +P   ++   P   K++ K+KAF   + L+
Sbjct: 246 GIGYSPTWLFESELARGEVVRVMPDWQSPHLPIHMVSPPERKHSAKVKAFVEHVALE 302


>gi|262275098|ref|ZP_06052909.1| transcriptional regulator LysR family [Grimontia hollisae CIP
           101886]
 gi|262221661|gb|EEY72975.1| transcriptional regulator LysR family [Grimontia hollisae CIP
           101886]
          Length = 312

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +  F  V  SGSFT AA +L +S S +SR+I  LE  +  +L YR  R +TLTE G 
Sbjct: 4   WSGVEEFVEVVNSGSFTAAARKLGVSTSHVSRRIDALECRLSTRLLYRTTRQITLTEVGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  K    +  + +   +P G L+I      G+  +   + +F+ ++P + +
Sbjct: 64  MYFEQCNDLIEKFAEVEALVTQMQTEPVGTLKITAPSVFGEKFIAPLVNDFIDVHPRLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +    N  +D+  D  D AIR    ++ S+L+ +KL    ++  A+P YL+    P++I 
Sbjct: 124 EFHFTNDVVDLVHDGYDLAIRT-GDLKDSTLMAKKLAPRKLYVCASPAYLREFGAPVNID 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN +  G +     +D     T+ +P G         NS  +++   + G GIA L
Sbjct: 183 DLQNHNCL-IGLVDSWSFQDGGATVTI-KPRGR-----WHGNSGSAVLDAALHGLGIAQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V     +  LV ++ D   P   V+  YP     + K++ F +F+
Sbjct: 236 PDYYVSQKILSGELVEVLADYQAPDSAVWAVYPFNRNLSAKVRQFVDFL 284


>gi|311104236|ref|YP_003977089.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758925|gb|ADP14374.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           33 [Achromobacter xylosoxidans A8]
          Length = 310

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 143/283 (50%), Gaps = 9/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ +  V   GSF  AA+++  ++S ++RQI+ LE + G++L  R  R L++T+ G   +
Sbjct: 7   MQTYAKVVELGSFAAAADKMGQARSVVTRQIAYLEQKYGVRLLNRTTRKLSMTDAGRAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   ++ LQ    +PSG+LR++  +  G   L   + E+L  YPD+ I L 
Sbjct: 67  ERVRPILAEVADLELSLQAEGQRPSGRLRVSAPVSFGILHLGPAIAEYLQRYPDVIIDLD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  D  D A+R+  P+Q SSL+ R L    +   AAP YL+    P + +EL 
Sbjct: 127 LNDRVVDLVEDGYDVAVRI-GPLQDSSLVARPLAPQQLLVCAAPEYLRRHGTPQTPEELK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +            W    D      R+ + L+ N+   +    + G GI L PD
Sbjct: 186 QHRCLHYA----YASTGNEWHFEKDGVTHLVRVNAALRANNGDVLRTAALAGHGIILQPD 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++V D+     LV ++ D    S ++Y  YP     + K+++F
Sbjct: 242 FLVGDDIRAHRLVALLTDYTHTSISMYAVYPHRRFLSPKVRSF 284


>gi|261252401|ref|ZP_05944974.1| putative transcriptional regulator LysR family [Vibrio orientalis
           CIP 102891]
 gi|260935792|gb|EEX91781.1| putative transcriptional regulator LysR family [Vibrio orientalis
           CIP 102891]
          Length = 291

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 141/289 (48%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEESLNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S + ++L     E+ +     +GK+RI    +L + ++      F++ YPDI I+
Sbjct: 64  FFNECSPLLNRLTCAAEEITDECRGAAGKIRIIAPSNLTKRMMMPMFNGFMIQYPDINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N+   +     D   R+  P + SSLI RK+  +     A+P YLK    P   +E
Sbjct: 124 LTTSNQADQLDPTEWDVIFRV-GPQRDSSLIARKISAVEDILVASPEYLKKYPAPQHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+L+    L+   + + +    V+   G       Q N+   +   C  G GI L+P
Sbjct: 183 LHQHSLLKGAPLLKWQLSNNSGEIVVNNDKGR-----FQANTLNVVRSACSDGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++K   D+ +LVR++E+       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMIKEYIDDGSLVRVLENWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|295096919|emb|CBK86009.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 301

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S+ISR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELTIFVAVVESGSFSRAAEQLGQANSAISRSVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSVLQEMAAAETEIMESRSTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPQYIAEHGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            +++EL +H  + F +  P  +    W +A  D  + E  I+C L  NS  ++ Q C+ G
Sbjct: 180 ETVEELKQHLCLGFTE--PVSLN--TWPVACHDGQLHE--ITCGLSSNSGETLKQLCLEG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV +M D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIAAGQLVELMADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|116252690|ref|YP_768528.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257338|emb|CAK08433.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 299

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 144/284 (50%), Gaps = 16/284 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GSFT AA  L + ++++SR+I+ LE E+G++L  R  R L+LT  G   +  
Sbjct: 2   IFARVTEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSLTASGRLYYEE 61

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +S+    +E   + L E+  +P+G +RI+  +  G + LQ  + EFL  YP  +++L L 
Sbjct: 62  SSQALRTIEDANLRLAETRAEPAGTIRISAPVGFGGHFLQDAIFEFLSTYPKTRVELRLT 121

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +++  +  D A R    ++ S+LI RKL + H    A+P YL  C  P   ++L  H
Sbjct: 122 DDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLVRCGSPDVPEDLAHH 180

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLP- 245
           + +  G           WL  ++ P G+  I+       N   ++M   + G GIA LP 
Sbjct: 181 DCVIAGQ-----SAHAQWL--LEGPQGQETIAVSGRFAANEMQAVMAAAIAGHGIAQLPH 233

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              D  +KD   L R+++   TP+  ++  YP +      +KAF
Sbjct: 234 GIADACIKDG-RLRRVLDGYTTPAGGLHVVYPSSRHLPPLVKAF 276


>gi|254460552|ref|ZP_05073968.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           HTCC2083]
 gi|206677141|gb|EDZ41628.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 302

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW  +R F  VA +GS + AA  L  SQ ++ RQI  LE ++G++LF R  RG  LT+
Sbjct: 7   NLDWSLIRAFLAVAETGSLSAAARSLSQSQPTLGRQIKLLEEQIGLRLFERQTRGFRLTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L     E+        +       K  G +RI  +  +  ++L   +       PD
Sbjct: 67  TGESLLEPAQEMRAAFGKLSLRAAGRDHKMQGTVRITASEVMAHHVLPSIIAGIREEEPD 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI+++  +   ++    AD A+R+ +  Q   +I +++ T  M  YAA  YL     P 
Sbjct: 127 IQIEIVPSDASENLLFREADIAVRMYRSTQ-LDVITKQISTAKMGIYAAKSYLAKHGTPE 185

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            I++L +H+++ +   D I   M D  W AT D       + C   N+Y  +++    G 
Sbjct: 186 RIEDLLEHSIVGYDRDDRIIVGMRDLGWPATRDF----FDVRCDDQNTYWELVRA---GC 238

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G+          +P + R++ DV  P+  ++   PE ++ T ++K
Sbjct: 239 GVGFTQQSFASVDPLIARVLPDVDLPTLPIWLAAPEIMRATPRIK 283


>gi|117618871|ref|YP_857840.1| LysR family transcriptional activator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560278|gb|ABK37226.1| LysR-family transcriptional activator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 282

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 141/284 (49%), Gaps = 14/284 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GSFT AAE L + +SS+S++IS LE+++G++L  R  R L+LT QG      
Sbjct: 3   LFATVVEQGSFTGAAELLGMPKSSVSQKISRLESQLGVRLLQRTTRRLSLTPQGEVYVEQ 62

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +     +  + +      P+G++RI      G  LL   L EF  LYP++ ++L L 
Sbjct: 63  CRALLALARSANLAMARLRAAPAGRVRITAPEATGTLLLGRILAEFRALYPEVVLELTLC 122

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R   P++ SSLI R++  +  H  AAP YL     P  + EL ++
Sbjct: 123 DEQLDLVGEGYDLALR-AAPLKDSSLICRRIGQVPRHLVAAPAYLAAHGMPQQLSELGRY 181

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             +    L    +++  W     RP G    +CL  NS L++ +  +   GIALLP ++ 
Sbjct: 182 ACLVHTSLPVWPLQEGGW-----RPQG----ACLS-NSLLALRELAINEGGIALLPHHVC 231

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +     L +++     P+   Y  YP        L++  +F+
Sbjct: 232 EGDLAAGRLQKVLPSHPIPANPFYLIYPSREHLAPALRSLMDFV 275


>gi|296387269|ref|ZP_06876768.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313109623|ref|ZP_07795570.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310882072|gb|EFQ40666.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 307

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 144/296 (48%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R L LT  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAETLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +L+  +  L  +++ P G+LRI     L + LL   L EF   YPDIQI
Sbjct: 64  AYYERVIRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +D+  +  DC IR  + ++  SL+ R++  + +  YAAP YL+    P   +
Sbjct: 124 DLGVSDRLVDLIDENVDCVIRGGE-LRDQSLMARRVGDLQLGVYAAPAYLQRAGVPSHPR 182

Query: 185 EL-DKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL D H  I        G  +P  M          R  G   ++    N+YL+     + 
Sbjct: 183 ELEDSHQRIVGFLWARTGKALPYAMHRGE---ESLRVAGRHVLAVDDGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP Y+ ++      L+ + ED       +Y  +P     +GKL+ F  ++
Sbjct: 237 GLGILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWV 292


>gi|295699606|ref|YP_003607499.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438819|gb|ADG17988.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 303

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 143/289 (49%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F     + +FT AA +L LS+  +SR++  LE  +G++L  R+ R L +T+ G +
Sbjct: 4   DDMRIFVATVDAHNFTAAANRLSLSKQFVSRRVMALEEALGVQLLIRNTRKLAVTDLGQE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++E  +  +      P G LR++  +  G   L   +  FL  + D++  
Sbjct: 64  FYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMTHLSPLVAAFLREHRDVRFD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D AIR+   +  SSLI +KL+ + M A  +P YL+    P+   +
Sbjct: 124 MELSDRAVDVVGEGFDMAIRI-GTLADSSLIAQKLMDVRMIACCSPAYLRRRGSPVVPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ + +G          NW   VD  +    +   L+ N+   I    V G GI  L
Sbjct: 183 LANHDCLLYGH-----GGAVNWEFRVDGAVKSVEVRGPLRANNGELIRDSAVAGLGIVRL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD+I+ D   +  LV ++E  +  +  VY  YP+  +++  ++AF  F+
Sbjct: 238 PDFIIADALASGQLVPVLEAFLPSATGVYAVYPQHRQSSVTIRAFVEFL 286


>gi|17545261|ref|NP_518663.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17427552|emb|CAD14070.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 305

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 143/286 (50%), Gaps = 21/286 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAAVRLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S    ++E       E    P GK+R+    D+G+ L+   +  F+  YPDI
Sbjct: 61  GQSLYQVASHALEEIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMQQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQKQGVPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
           +++L  HN + F         +  W     R +G   +  + V + L+      L     
Sbjct: 180 VRDLSHHNCLDFRG---TGRGETQW-----RLVGPDGLKTVAVRARLNADSLSYLETLIA 231

Query: 238 -GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
            G+GI  LP Y   + + N   P LVR++ +  T    ++   P A
Sbjct: 232 SGAGIGPLPLYAGGVARANAPLPRLVRVLPEYATSGEPLHLVTPTA 277


>gi|330820259|ref|YP_004349121.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327372254|gb|AEA63609.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 320

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 151/290 (52%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MQVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTPEGAGYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++       Q  + KP G LR+     LG+ ++   L EF   YPDI++Q  
Sbjct: 67  EHCIRILTEISEADASFQVGNRKPHGALRVHMPSLLGRRVVLPALPEFHERYPDIELQFG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR+  P++ SS++ R++  ++  + A+P YL+   EP SI+EL+
Sbjct: 127 MSDRPVDLVRDGFDCEIRV-GPLEDSSMVARRVGVMNRVSCASPAYLEKFGEPRSIEELE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI----- 241
           KH  + F   + + M    W+  +D  + E R+ S + VN   + +   + G G+     
Sbjct: 186 KHRAVNFAYALGRPMP---WIFLIDGKLQEIRMNSIVTVNDSDAYVTCALEGFGLIQPTL 242

Query: 242 -ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +++P  +   + +LV I++ V      +   YP     +  ++ F ++I
Sbjct: 243 FSVIPHLM---DGSLVEILQGVYPKPKPISIVYPHNRHLSMTVRVFADWI 289


>gi|307546057|ref|YP_003898536.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218081|emb|CBV43351.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 298

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 17/292 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD++  F  V R G+F  AAE+L +S S +SR +S LE+++   L YR  R + LTE G 
Sbjct: 4   WDRVEAFIEVVRLGAFNAAAERLRVSSSHVSRLVSQLESQLDTPLLYRTTRRIRLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    ++      +  ++E   +PSG L + +    G+  L   + +F+ L+P +++
Sbjct: 64  LYYQHCHHLFDGFREAEAAIKELQTRPSGLLSLTSATTFGERYLAPLVHDFMRLHPQLEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   N+ +DI  +  D AIR+   +Q SSLI R+L     +   +P Y  +  +P ++ 
Sbjct: 124 NMHFTNRRVDIIDEGFDIAIRM-GTLQDSSLIARRLCERREYVVGSPDYFTHYGQPHALS 182

Query: 185 ELDKHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           EL +H          +C+     +W   VD    E RI    + NS  +++   + G G+
Sbjct: 183 ELSRH----------RCLAGTRDHWRFDVDGVRREIRIDGPWRGNSGPALLDATLKGLGL 232

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LPDY V  +     L+ +++        V+  YP     + K++ F +++
Sbjct: 233 AQLPDYYVDQHLARGELISVLDAYRHDDTAVWAVYPRHRHRSPKVRQFLDYL 284


>gi|327392828|dbj|BAK10250.1| putative HTH-type transcriptional regulator YafC [Pantoea ananatis
           AJ13355]
          Length = 312

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 141/297 (47%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+VF  V  SGSF+ AAE L ++ S++SR I  LET++G+ L  R  R L LT
Sbjct: 1   MKASSEELKVFVSVVESGSFSRAAETLEMANSAVSRTIKKLETKLGLALLTRTTRNLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +  +        +   + EL ES   P G LRI     +  +L+   +K F   YP
Sbjct: 61  QEGERYFQQVQHFLQVMTAAENELMESRDVPKGLLRIDAATPVILHLIMPMIKSFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + LI     I++     D AIR    +  S L  R L   +    A+P YLK    P
Sbjct: 121 DIALSLISSENFINLIERKVDVAIRA-GSLTDSGLRARLLFISYRRLIASPDYLKKHGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L   +LD H  + F D  P+      W    +        S L  NS  +I Q C+ G+G
Sbjct: 180 LRAADLDNHQCLGFID-APRLN---RWPVACEGGELYGIRSELDSNSGETIKQLCLEGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L DY+V    +  +LV IM D    V  P   VY+     L  T +++AF +F+
Sbjct: 236 IACLSDYMVHKEIEEGSLVEIMADQRLPVEMPFNAVYYS---DLGVTQRVRAFIDFL 289


>gi|170702385|ref|ZP_02893275.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170132699|gb|EDT01137.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 305

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 139/292 (47%), Gaps = 10/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE  +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTISEQAGEIYRQAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +     A+P YL+    P   
Sbjct: 126 IDLHLSDASVDLIADGFDAALRI-AALPDSSLVARRLCAVTQFVVASPEYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGI 241
           +EL     +++       +    W  T D    EP +    L+V +  +++   + G  I
Sbjct: 185 RELADRPCLSYAYRARSAL----WRFTNDVGDEEPVMPAGPLRVTNADALLPTLLDGLAI 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++ 
Sbjct: 241 AELPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARAAKVTALSDYF 292


>gi|261820666|ref|YP_003258772.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604679|gb|ACX87165.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 297

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 129/280 (46%), Gaps = 6/280 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F VVAR  SFT AA +L LSQS++S  I GLE  +G++L  R  R +  TE G KL    
Sbjct: 12  FLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTEAGEKLAHSL 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              +  +E+  + L +   +P+G +RI        ++L   LK FL  YPDI + + +DN
Sbjct: 72  GPRFADIESELVALSDMRERPAGNIRITAGEHAIDSILWPVLKPFLANYPDINVDITMDN 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              DI++   D  IRL + +    +  R    + M    +P+Y      P + Q+L +H 
Sbjct: 132 ALTDIAIGRFDAGIRLGEQVAKGMIAVRIAPEMSMAVVGSPNYFARNPPPATPQDLHQHR 191

Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            I     +P     + W      R I       L +NS    +    +G G+A +P+  V
Sbjct: 192 CINM--RLPAMGGIYAWEFEKSGREIKVCVEGQLTMNSLRQRIDAAQIGLGVAYVPEDSV 249

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +DN     L+R++ +   P    Y  YP   ++T     F
Sbjct: 250 QDNIASGRLIRVLTEWCPPFPGYYLYYPSRKQHTTAFSLF 289


>gi|16759242|ref|NP_454859.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142983|ref|NP_806325.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213162314|ref|ZP_03348024.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417582|ref|ZP_03350724.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213428409|ref|ZP_03361159.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213619182|ref|ZP_03373008.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213857339|ref|ZP_03384310.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|25319826|pir||AF0533 hypothetical transcription regulator yafC [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501533|emb|CAD08710.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138615|gb|AAO70185.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 304

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 19/299 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKVIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            S++EL +H  + F + I       N W +A  D  + E  I C +  NS  ++ Q C+ 
Sbjct: 180 ESVEELKQHLCLGFSEPI-----SLNTWPIACSDGQLHE--IECGISSNSGETLKQLCLN 232

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 233 GNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|220925972|ref|YP_002501274.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219950579|gb|ACL60971.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 297

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 134/273 (49%), Gaps = 6/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR GSFT AA +L +SQS++S  + GLE  +GI+L  R  R ++ TE G +
Sbjct: 7   NDLAAFLAVAREGSFTRAAAKLGVSQSALSHSLKGLEARLGIRLLTRTTRSVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R  +  + +++     L +   KP+G +RI+      ++++   L+  L  YPD+ ++
Sbjct: 67  LVRTLAPRFDEIDAELAALTKYREKPAGNVRISAGEHAAESIIWPTLERLLPEYPDVTVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +++DN   +I  +  D  +RL + ++   +  R    + M A  AP Y +  R+P + ++
Sbjct: 127 VVVDNGLTNIVAERYDAGVRLGEQVEKDMVAVRIGPDMRMAAVVAPSYFEGRRKPRTPED 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  I     +P     + W      R +       L VN+    ++  + G G+A L
Sbjct: 187 LTGHACINL--RLPTRGGIYAWEFEKGSRALNVRVEGPLVVNTGSMALKAALSGLGMAYL 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           P+  V+   D   LVR++ D   P    +  YP
Sbjct: 245 PEDRVRTGLDEGRLVRVLADWCPPFPGYHLYYP 277


>gi|90414557|ref|ZP_01222531.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
 gi|90324364|gb|EAS40930.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
          Length = 291

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 143/284 (50%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V ++G FT AAE L L +S++SR+++ LE+++G++L  R  R + +TE G      
Sbjct: 3   IFARVVQAGGFTAAAEILALPKSNVSRRVARLESDLGVRLLERTTRKIHVTEIGEIYFHH 62

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  + E   + +Q    +P G LR++ ++  GQ LL   L  F+  +P+I++QL L 
Sbjct: 63  CLRIIEESEHADLSVQSMVAEPRGILRVSASVTTGQQLLAPLLPSFMAQFPNIELQLELT 122

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ ID+  +  D AIR+   ++ S L+ RKL     H YA+  YL         ++L  H
Sbjct: 123 NRRIDLIEEGLDVAIRV-GLLEDSRLVSRKLGVSQHHLYASQTYLDQQALLTEPEQLCSH 181

Query: 190 NLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            ++   D     K +   N      +   +P  +    N + S+ Q+   G GIA+LP Y
Sbjct: 182 RVLLMSDQAGAKKHVVVLNKNEQTQQISVQPLCTA---NDFHSLHQFAKQGMGIAVLPHY 238

Query: 248 IVKD-NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  D +  LVR++     PS   +  YP     T KL+ F +F+
Sbjct: 239 MCHDPDDKLVRVLPAWSCPSLDFHAIYPSHRGATPKLRVFLDFM 282


>gi|172065228|ref|YP_001815940.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997470|gb|ACB68387.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 305

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 141/296 (47%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AAE LH+S++++++ +  LE  + ++L  R  R + +T  G 
Sbjct: 4   FDAMRAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVRLLNRTTRRINVTPDGI 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   + +   ++  +  L  +S  P G+LR+       + +L   L  FL  YPDIQ+
Sbjct: 64  AYYERVTRLLADMDDAETSLSSASAVPRGRLRVDVPSPFARLILIPALPAFLARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +DI  +  DC +R  +P    S++ R++  + +   A+P YL     P    
Sbjct: 124 DMGVSDRTVDIIGENVDCVVRGGEP-NDQSMVARRVADLSLGIVASPGYLALASTPSHPA 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ F     G L P  M   +    V    G   ++    N+YL+     V 
Sbjct: 183 ELENSHHRIVGFSWGRTGKLYPLVMHRGDETVAVQ---GRYALAVDDGNAYLAA---GVA 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP Y+ K   +   LV + +D       +Y  YP     + KL+AF +++
Sbjct: 237 GLGIMWLPHYMAKAHLERGELVTLFDDWQLDPMPLYIAYPPNRHVSAKLRAFIDWV 292


>gi|24376372|ref|NP_720480.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24345286|gb|AAN53080.1|AE015922_9 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 289

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 152/292 (52%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT AA+QL +S + +SRQ+S LET +  KLF+R  R ++++E 
Sbjct: 2   FNWEGVSEFVAVAEAESFTKAAKQLGISTAQVSRQVSALETRMATKLFHRTTRKVSVSEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +      P G L+I   +  G+  L   + +F+  YP++
Sbjct: 62  GRIYYQHCRQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGEKTLVPLVNDFIAKYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L N+ +D+  D  D AIRL + ++ SS++ ++L +   +  A+P Y+     P S
Sbjct: 122 EVKINLTNQKVDLIDDGYDLAIRLGQ-LKDSSIMAKRLGSRTQYVCASPDYVSTFGIPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           + EL++HN +  G L      D+ W    +      R+   L  NS  +++   + G GI
Sbjct: 181 LSELEQHNCL-LGTL------DY-WRFQENGKTRNVRVKGNLTCNSGYALVDAAIKGIGI 232

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP+Y V    ++  LV ++E    P   ++  YP     + K++   +++
Sbjct: 233 IQLPEYYVLPFLEDGQLVPLLEQNRQPKEGIWALYPHNRHLSPKVRMLLDYL 284


>gi|27382676|ref|NP_774205.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355848|dbj|BAC52830.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 311

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 146/297 (49%), Gaps = 14/297 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF  AA +L +S++++S+ ++ LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEALAIFAKVVELRSFAGAASELAMSKATVSKAVTRLEERLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL    + +    E  + E    SV P G +R+A  +  G   +   L EF   YP++ 
Sbjct: 66  HKLAERATRLLVDGEAAENEALAQSVAPRGLVRLAVPMTFGIKAVAPLLPEFFETYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  ID+  +  D A+R+ + +  SSLI R+L T+     AAP YLK    P   
Sbjct: 126 VDLHLSDATIDLIGEGFDMAVRIAR-LPDSSLIARRLFTMPRFTVAAPSYLKRHGRPTHP 184

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             L +H   ++  L  P      N     A+V RP G+     L+VN+  ++M   + G 
Sbjct: 185 MHLAEHKCFSYAYLSTPNVWHYTNSAGEQASV-RPGGQ-----LRVNNGEAVMPALIAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIA LP++IV +   +  +  I++D       V+   P       +++A  +F+  K
Sbjct: 239 GIAELPEFIVGEAISSGEVEVILKDWKQAEGAVHLVTPPGGPRPARVEALADFLAAK 295


>gi|312959416|ref|ZP_07773933.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311286133|gb|EFQ64697.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 298

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA    FT AAE+L +S S ISRQ++ LE  +  +L YR  R +TLTE G 
Sbjct: 6   WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQVARLEERLQTRLLYRSTRKVTLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLQHCQRLQDGREEALRAVGDLASEPKGMLRMTCAVAYGERFIVPLVTRFMGLYPQLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  SS++  +L    M+  A+P YL+    P S+ 
Sbjct: 126 DIELSNRQLDLVHEGLDLAIRLGR-LSDSSMVASRLAPRRMYVCASPSYLERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +           D   LA   R   +      + NS  +++   + G G+  L
Sbjct: 185 ELSRHNCLIGSS-------DIWQLAQDGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V     +  LV ++E    P+  V+  YP+    + K++    F+
Sbjct: 238 PDYYVLQHLHSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVGFL 286


>gi|238913724|ref|ZP_04657561.1| hypothetical protein SentesTe_21687 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 304

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 19/299 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            S++EL +H  + F + I       N W +A  D  + E  I C +  NS  ++ Q C+ 
Sbjct: 180 ESVEELKRHLCLGFSEPI-----SLNTWPIACSDGQLHE--IECGISSNSGETLKQLCLN 232

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 233 GNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|171319478|ref|ZP_02908581.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095287|gb|EDT40273.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 304

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 139/296 (46%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AAE LH+S++++++ +  LE  + ++L  R  R + +T  G 
Sbjct: 4   FDAMRAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVRLLNRTTRRINVTPDGI 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   + +   ++  +  L  +S  P G+LR+       + +L   L  FL  YPDIQ+
Sbjct: 64  AYYERVTRLLADMDDAETSLSSASAVPRGRLRVDVPSPFARLILIPALPAFLARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +DI  +  DC +R  +P    S++ R++  + +   A+P YL     P    
Sbjct: 124 DMGVSDRTVDIIGENVDCVVRGGEP-NDQSMVARRVADLSLGIVASPGYLALAGTPSHPA 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ F     G L P  M        V    G   +     N+YL+     V 
Sbjct: 183 ELENSHHRIVGFSWGRAGKLYPLVMHRHGETVAVQ---GRYALVVDDGNAYLAA---GVA 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP Y+ K   +   LV + ED       +Y  YP     + KL+AF +++
Sbjct: 237 GLGIMWLPHYMAKAHLERGELVTLFEDWQLDPMPLYIAYPPNRHVSAKLRAFIDWV 292


>gi|260221488|emb|CBA30101.1| hypothetical protein Csp_A15470 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 304

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 141/298 (47%), Gaps = 21/298 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +  F  V  +GSFT AA+ LH+S+++ ++ +  LE  + +KL  R  R + +T  G+
Sbjct: 4   FDAMLAFVRVVEAGSFTKAAQTLHMSKTTATQLVQQLEARLRVKLLNRTTRKVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +  L  ++  P G+LR+     L + LL      F   YPDIQI
Sbjct: 64  AYYERAVRLLIDLDDAETSLSSAAASPRGRLRVDVPSPLARMLLVPAFPAFHARYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L + ++ +D+  D  DC IR  + +   SLI R +  + +  YAAP YL+    PL   
Sbjct: 124 ELGVSDRLVDLIGDNVDCVIRGGE-LTVPSLIARHVGDLRLGVYAAPSYLQRVGTPLHPL 182

Query: 185 ELD--KHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRIS-----CLQVNSYLSIMQYC 235
           +L   +H ++ F   +        W      P+  G  RI       L ++   + +   
Sbjct: 183 DLGGAEHRIVGF---LSSRTGKVLWF-----PLRRGAERIEIQGRYVLAIDDGNAYLAAA 234

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V G G+  LPDY+ K+   N  LV + ED    S  +Y  +P     + KL+ F N+I
Sbjct: 235 VAGMGVVWLPDYMAKEHLKNGELVPLFEDWALDSMPMYLAFPPNRHVSMKLRVFINWI 292


>gi|170693923|ref|ZP_02885080.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141341|gb|EDT09512.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 307

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W +L++F + A  GS + AAEQL +S ++ SR +S LE  +G +L  R  R + LT+ G 
Sbjct: 4   WTQLQLFVLTADLGSLSKAAEQLDMSNAAASRTLSSLEERLGARLIERTTRRMWLTDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + HR  + V  +L        E +V P G LR+ +++      +   L EFL  YP++ +
Sbjct: 64  EYHRRCTAVISELSEADSIASEEAVSPRGVLRVTSSVSFAMMHIAPALPEFLTRYPNLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  N+  +      D AIR R+    S +  R+L        A+P YL     P + +
Sbjct: 124 QIVAANQYQNFIEAGIDIAIRTREHEGDSGITIRRLAETRRVLAASPAYLSAHGRPQNPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN++ +   +   +       T +R I     S L  N    I+     G GI + 
Sbjct: 184 DLAQHNMLVYNLAVDPYLLHLR-RGTEERNIAIA--SALDSNEGQVIVAAGRAGLGIVVQ 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P YI+ D+     LV +++D   P  T+   Y        K++ F +F+  + R
Sbjct: 241 PLYIIHDDIVSGRLVPVLDDWQLPRLTINLAYQSRRYQPAKIRVFTDFLMERVR 294


>gi|238782715|ref|ZP_04626745.1| Transcriptional regulator, LysR family [Yersinia bercovieri ATCC
           43970]
 gi|238716375|gb|EEQ08357.1| Transcriptional regulator, LysR family [Yersinia bercovieri ATCC
           43970]
          Length = 302

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 139/292 (47%), Gaps = 20/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA  GSFT AAE   L +SS+S++IS LE  +GI+L  R  R L LT  G +  
Sbjct: 8   MALFARVAECGSFTRAAEMAGLPKSSVSKRISQLEQGLGIRLINRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+ H  E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ ++++
Sbjct: 68  VHCQEMLHAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLATDFQRQYPDVLLEVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186
           + +  +D+  +  D A+R  KP Q SSLI R+L     +  AAP YL     PLS   +L
Sbjct: 128 VSDTMVDLVEEGFDVALRTGKP-QDSSLIGRRLGYAPRYLLAAPDYLAQ-HPPLSHPSQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIA 242
             H+          C+    W A + R  GE    ++    V   L   + C L G GI 
Sbjct: 186 AMHH----------CIAHRAWQALILRREGEFYRWQVPVQHVTDNLLYARECALAGGGIT 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LLP ++ +D   +  L+ ++         +Y  YP    N+  L  F + + 
Sbjct: 236 LLPAFLSRDVVASRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVVM 287


>gi|120600546|ref|YP_965120.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120560639|gb|ABM26566.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
          Length = 298

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 13/277 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A ++L LS+S++S++I+ LE  +G++L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSAAGQKLGLSKSAVSKRITLLEQSLGLQLLHRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +          +     + E    P G LRI+  +  G+  +   + EFL  YPDIQ+
Sbjct: 64  RYYNYVCPAVQLAQEGLDAISELQQAPQGHLRISVPMVFGRVYIAPLIAEFLRRYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RKL        AA  YL     P +  
Sbjct: 124 QMHMDDKTTDLITGGFDLAIRIGE-LPDSSLIARKLAPCLSVICAAKDYLAQHGLPSTPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
            L +HN + +        +   W  +   P G  R+      QVN+  +I Q C+ G GI
Sbjct: 183 ALTQHNCLFYSYF----QDGVEW--SFQSPNGVQRVQPKGNYQVNNSDAIHQACLDGLGI 236

Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275
           A LP +IV+ +    R   ++ D   P   +Y  YP+
Sbjct: 237 ANLPRFIVEPDLQTGRLQALLTDYPLPEHGIYAVYPQ 273


>gi|13476598|ref|NP_108168.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14027360|dbj|BAB53629.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 300

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 146/301 (48%), Gaps = 17/301 (5%)

Query: 1   MSFDW---DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD      + V   +A  GSF  AA+ L LS+S +SR +S LE  VG++L  R  R +
Sbjct: 1   MAFDGRVISNVGVLAAIAEGGSFARAADALGLSRSGVSRAVSRLEARVGVRLLDRTTRAV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT++G +L+   + +   +E        +SV   G+LR+       + L   ++ EFL 
Sbjct: 61  SLTDEGRRLYAEVAPLLTGIEDAVTVTSGTSVAVRGRLRVNVDAFFSRQLFTPHISEFLS 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYPD+ ++L+  ++  D+  +  D AIR   P   SSL+ +KLV       AAP YL   
Sbjct: 121 LYPDLSLELVARDQLGDLVAEGFDIAIRFGTP-PVSSLVVKKLVETRTVTVAAPAYLTAH 179

Query: 178 REPLSIQELDKHNLITFGD-LIPKCMEDFNW---LATVD-RPIGEPRISCLQVNSYLSIM 232
             P    +L +H  I   D L  + +E++ +      VD R  G      L V  + +++
Sbjct: 180 GTPTIPADLVEHACIQVRDSLTGQPIEEWRFRRGAEVVDVRTTGR-----LMVTEFGTML 234

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             C+ G GIA +    V+       LV ++ D    SF +Y  YP       K++AF +F
Sbjct: 235 GACLDGVGIARIKAIGVQHLIQQGALVEVLPDWRGESFPLYALYPSRHLPPAKVRAFIDF 294

Query: 290 I 290
           +
Sbjct: 295 V 295


>gi|146294704|ref|YP_001185128.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145566394|gb|ABP77329.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 298

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 13/277 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A ++L LS+S++S++I+ LE  +G++L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSDAGQKLGLSKSAVSKRITLLEQSLGLQLLHRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +          +     + E    P G LRI+  +  G+  +   + EFL  YPDIQ+
Sbjct: 64  RYYNYVCPAVQLAQEGLDAISELQQAPQGHLRISVPMVFGRVYIAPLIAEFLRRYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RKL        AA  YL     P +  
Sbjct: 124 QMHMDDKTTDLITGGFDLAIRIGE-LPDSSLIARKLAPCLSVICAAKDYLAQHGLPSTPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
            L +HN + +        +   W  +   P G  R+      QVN+  +I Q C+ G GI
Sbjct: 183 ALTQHNCLFYSYF----QDGVEW--SFQSPNGVQRVQPKGNYQVNNSDAIHQACLDGLGI 236

Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275
           A LP +IV+ +    R   ++ D   P   +Y  YP+
Sbjct: 237 ANLPRFIVEPDLQTGRLQALLTDYPLPEHGIYAVYPQ 273


>gi|239832917|ref|ZP_04681246.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239825184|gb|EEQ96752.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 309

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT+ 
Sbjct: 17  MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTQA 76

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++   + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 77  GEEFLLAAERMEAEMLAARSQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 136

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   LI R+LV   +  YA   YL+    P S
Sbjct: 137 TIQLVPVPRSFSLSRREADIAITVERPEQ-GRLIARRLVDYTLGLYAHRRYLEENGTPES 195

Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            ++L +H LI +  DL+        P+   D+                  +V+S L  ++
Sbjct: 196 PEDLPRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSALGQVE 241

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+GI +L  +I + +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 242 AVRAGAGIGILHAFIARADPDLVPVLPDRVIRRAY--WLAYHESARTLRRVTAVSALI 297


>gi|198242091|ref|YP_002214212.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207855768|ref|YP_002242419.1| hypothetical protein SEN0258 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|197936607|gb|ACH73940.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|206707571|emb|CAR31845.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326621956|gb|EGE28301.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 304

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 19/299 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            S++EL +H  + F + I       N W +A  D  + E  I C +  NS  ++ Q C+ 
Sbjct: 180 ESVEELKQHLCLGFSEPI-----SLNTWPIACSDGQLHE--IECGISSNSGETLKQLCLS 232

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 233 GNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|88797688|ref|ZP_01113276.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
 gi|88779365|gb|EAR10552.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
          Length = 306

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 137/282 (48%), Gaps = 17/282 (6%)

Query: 1   MSF--DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           MSF  DW  +  F  V  +GSFT AA++L +S + +SRQ++ LE  +  +L YR  R + 
Sbjct: 1   MSFIPDWAGIAEFVSVVETGSFTAAAKRLKVSTAQVSRQVNQLEQRLATQLLYRSTRRVR 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           ++E G + +     +    ET + +LQ     P G+L +   I  G+  L   + +F + 
Sbjct: 61  VSELGQRYYHQCRLLMDGFETAENDLQALQATPRGRLNLTAPITYGEQFLMPQVNDFQVQ 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP++ + + L N  +DI     D AIRL + +  S L  RKL T  +    +P YL+ C 
Sbjct: 121 YPELTVNVELTNTQLDIVDAGFDLAIRLGR-LSDSRLRARKLATRQVRTCCSPGYLRRCG 179

Query: 179 EPLSIQELDKHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           EP ++ EL +HN  L + G    + ++D   L TV           L+ NS  S++    
Sbjct: 180 EPHTLAELKRHNCLLGSVGQWRFR-VQDEEKLVTVS--------GSLRCNSGRSLLDAAS 230

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
              GI  LP+  V D   +  LV ++      S  ++  YPE
Sbjct: 231 KDIGIVQLPEEYVLDGLSDGTLVEVLSAYRPDSEGIWGVYPE 272


>gi|84389410|ref|ZP_00991216.1| putative transcriptional regulator [Vibrio splendidus 12B01]
 gi|84376925|gb|EAP93798.1| putative transcriptional regulator [Vibrio splendidus 12B01]
          Length = 289

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 147/293 (50%), Gaps = 17/293 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA   SFT AA++L  S + ISR+++ LE  + +KLF R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAERESFTGAAQKLATSVAQISRRVANLEERLAVKLFNRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P G L++   +  G+  L   L +FL L+P ++
Sbjct: 63  QLYYQQCKLLVEGLEIAELAVTQMQSTPKGLLKVTAPVTYGERQLAPILHQFLKLHPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L N+ +D+     D AIRL + ++ SSL+ +KL    ++  A+P Y++   EP ++
Sbjct: 123 LELMLTNQKLDLIDSGVDVAIRLGR-LEDSSLVAKKLSQRQLYVCASPEYIERYGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSG 240
            EL  H  +  G       E + +     RP       RI C   NS L+++       G
Sbjct: 182 SELSHHQCLVGG------FEHWRFKEN-KRPRSVRVNGRIRC---NSGLALLDAAKQSIG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  LP+Y V ++     LV ++ D       ++  YP+    + K++   +F+
Sbjct: 232 LVQLPEYYVSEDLESGELVEVLSDYRDDKEGIWALYPQNRNLSSKVRLLVDFL 284


>gi|71736202|ref|YP_275955.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556755|gb|AAZ35966.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 298

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA++L +S S ISRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQGLQDGREEALRAVGDLTSEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S ++  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+ + N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286


>gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072706|gb|ADJ62105.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 299

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 137/287 (47%), Gaps = 7/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GSF  AAE L +S++++SR +  LE  +G +L  R  R L+LTE G+  
Sbjct: 6   EIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGALY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   LE     L   S KP+G LRI   +  G   L      FL  +P+I + +
Sbjct: 66  LERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISLDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +DI  +  D AIR+ + +  S+L+ RKL +  +H  A+P YL     P    EL
Sbjct: 126 TLSDRIVDIIDEGYDMAIRIAR-LSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I++     K    FN     + P+     S L VN+  S +Q  + G GI   P 
Sbjct: 185 AQHQTISYSYNQSKDEWQFN---GPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPT 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++     +  LV I+ D   P   +Y  YP       K++A  +F+
Sbjct: 242 FMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFL 288


>gi|293608489|ref|ZP_06690792.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829062|gb|EFF87424.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 301

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 145/280 (51%), Gaps = 11/280 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEEQLGVALFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGALFYEHSRRALSEIQNAAALLDQGKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++ +D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRTVDLVEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNKAGPL 180

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +I++LD H  I    FG      M+ +      D P+     + L +N   +I    + 
Sbjct: 181 QNIEDLDHHATIADPHFGQ-----MQKWRLQKENDEPLFIKPKAKLLLNDLQAIKNAALA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           G+GIA LPD+++++      LV+++E + + +F ++  +P
Sbjct: 236 GAGIAWLPDWLIQNELQEGKLVQVLETMSSIAFPIHLVWP 275


>gi|54303664|ref|YP_133657.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46917095|emb|CAG23857.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 300

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 24/305 (7%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+F+   +D + VF  V  SGSFT AA     S S IS++I+ LE  +GI+L +R  R L
Sbjct: 1   MAFNAVLFDGMVVFTEVVNSGSFTQAALNSGHSTSYISKEINKLEARLGIRLLHRTTRTL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT +G    +   ++    +  +  +     KP G+L+++  +  G + L+  L +F  
Sbjct: 61  SLTPEGELYFQQCLQLIEDAQVAENAITGQQEKPQGRLKVSCPVSFGLSNLRPILSQFTE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP+I ++L L+++ IDI  +  D AIR  K +  SSLI R++   +    A+P YL+  
Sbjct: 121 QYPEIVLELDLNDRKIDIVAEGYDVAIRASKQLDDSSLISRRIRRSYTVVIASPDYLQKH 180

Query: 178 REPLSIQELDKHNLITFG--------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229
             P    EL +H  I++         DLI +  +      T+  PI   +   +  NSY+
Sbjct: 181 GTPKHPSELSQHKTISYSYIRQGNSWDLIDQDGQ------TIHIPI---KSQVVTNNSYM 231

Query: 230 SIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +  C+ G GI +LP + + D      LV +  D       ++  YP     + K++ F
Sbjct: 232 E-LALCMAGQGITILPHFHLHDEVEQGKLVALFTDFPRLPIDIFMVYPSRKHMSAKVRCF 290

Query: 287 RNFIF 291
            +FI 
Sbjct: 291 LDFIM 295


>gi|193077028|gb|ABO11781.2| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           17978]
          Length = 301

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 147/280 (52%), Gaps = 11/280 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEDQLGVALFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGALFYEHSRRALSEIQNAAALLDQRKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++++D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRNVDLIEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNKAGPV 180

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             I++LD+H  I    FG      M+ +      D P+     + L +N   +I    + 
Sbjct: 181 EHIEDLDQHATIADPHFGQ-----MQKWRLQKENDEPLFIKPKAKLLLNDLQAIKNAALA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           G+GIA LPD+++++   +  LV++++ + + +F ++  +P
Sbjct: 236 GAGIAWLPDWLIQNELQDGKLVQVLDAMSSTAFPIHLVWP 275


>gi|253690041|ref|YP_003019231.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756619|gb|ACT14695.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 302

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 140/291 (48%), Gaps = 18/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA +  L++SS+S +IS LE ++G++L  R  R L LT  G +  
Sbjct: 8   MALFALVAECGSFTQAARKAGLAKSSLSLRISQLEQQIGLRLLNRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + +Q     PSG+LRI +   LG  LL     EF   +P + + ++
Sbjct: 68  IHCQEMLQASERADLAIQRLRDNPSGRLRITSPAGLGSTLLARLTAEFQQRFPAVSLDVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  ID+  +  D A R  KP   SSLI R L     +  A+P YL      L  Q+L 
Sbjct: 128 ISDAVIDLVQEGFDVAFRTGKP-HDSSLIGRPLGQTPRYLLASPDYLARHPALLHPQQLQ 186

Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I        L+ +  E + WL      + +  I+    ++ L   +  + G+GI L
Sbjct: 187 QHRCIAHHAWTEWLLHRGSELYRWL------LPDAHIT----DNLLYARECAIAGAGITL 236

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LPD++  D+     LVR++ D    +  +Y  YP    N+  L  F +F+ 
Sbjct: 237 LPDFLCLDDAVSGKLVRVLSDWQAEANELYLVYPSRKLNSPALACFIDFVL 287


>gi|163748493|ref|ZP_02155747.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161332071|gb|EDQ02748.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 300

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 5/285 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + VF  V ++G F+ AAE +  S S IS++++ LE  +G++L  R  R + LT +G 
Sbjct: 7   FDGVMVFTQVVKTGGFSAAAELMGHSTSYISKEVNKLEERLGVRLLNRTTRSIALTPEGK 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++    E     L    + P G LR++T +  G N LQ  L E++ LYP++ +
Sbjct: 67  AYYQECQQLVADAEQAVNMLTLHELAPKGILRLSTPVGFGNNYLQPILAEYMRLYPNVSL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D+  +  D AIR    ++ SSLI RK+ +   +  A+P YL     P   Q
Sbjct: 127 DLDLNDRKVDVVAEGYDLAIRASLQLEESSLICRKIFSCKGYIVASPGYLSKHGRPHHPQ 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN   + +L  K    + +     +P        L  NS    +   +   GI  L
Sbjct: 187 ELSRHNCFCYSNL--KSPNKWQFNDKEGKPYSVEVRQKLVCNSAEMELALVLDDLGICRL 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P + +++   +  L  + ED+  P   V+  YP     + K++AF
Sbjct: 245 PMFYMEEEIKSGKLEILFEDLPAPEIDVFVVYPSRKHLSPKVRAF 289


>gi|153832086|ref|ZP_01984753.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148871701|gb|EDL70542.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 300

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 137/285 (48%), Gaps = 8/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AA Q+ L++S +S++I+ LE E+G++L YR  R L +TE G  
Sbjct: 5   DDYIIFYHLVEQGSFSAAARQMELTKSVVSKRIAKLEQEIGVQLLYRTTRTLKVTEAGQS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  VY  + T +  +       SG ++I      G+ +L   + EF   YPDI I 
Sbjct: 65  FFEHARSVYQAVATAEESIVGLGKNLSGNIKITVPTISGELILPTVISEFNQAYPDINID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+  DI  +  D AIR    +  SSLI RKLV  +    A+P Y+    +P +  +
Sbjct: 125 MELDNRFADIVNEGFDLAIRT-GVLPDSSLIARKLVDANWIVCASPKYVAKHGKPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L KHN + +        E   W    D  + + ++   L  N+  ++    +LG GI  +
Sbjct: 184 LTKHNCLVYAYQETGARE---WAFKRDDEVYQVKVDGNLCTNNSSALRNVALLGQGIIYV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P  +V ++     L+++ +D       +Y  YP   +   K+K F
Sbjct: 241 PRVLVYEDLQQGKLIQLFKDETAKCLGIYAVYPYTRQQPEKIKIF 285


>gi|157377364|ref|YP_001475964.1| carbonate dehydratase [Shewanella sediminis HAW-EB3]
 gi|157319738|gb|ABV38836.1| Carbonate dehydratase [Shewanella sediminis HAW-EB3]
          Length = 289

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 152/292 (52%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT AA++L +S + +SRQ+S LET +  KLF+R  R +++TE 
Sbjct: 2   FNWEGVSEFVAVAEAESFTKAAKRLGISTAQVSRQVSALETRMATKLFHRTTRKVSVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +      P G L+I   +  G+  L   + +F+  YP++
Sbjct: 62  GRIYYQHCRQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGERTLAPLVNDFIAKYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  A+P Y+     P S
Sbjct: 122 EVKVSLTNQKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLGSRTQYVCASPGYVSTFGIPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           + EL++HN +  G L      D+ W    +      R+   L  NS  +++   + G GI
Sbjct: 181 LSELEQHNCL-LGTL------DY-WRFQENGKTRNVRVKGNLSCNSGHALVDAAIKGIGI 232

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V    ++  L+ ++E    P   ++  YP     + K++   +++
Sbjct: 233 IQLPDYYVLPYLEDGQLIPLLEQNRQPDEGIWALYPHNRHLSPKVRMLLDYL 284


>gi|144899149|emb|CAM76013.1| transcriptional regulator, LysR family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 310

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 144/292 (49%), Gaps = 16/292 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD L +F  +AR      AAE+L +  S++SR+I   E E+G +LF R+ +G TLT QG
Sbjct: 2   DWDNLHIFLELARGRRLMDAAERLGIDYSTVSRRIRRFEQELGTQLFDRNNQGYTLTAQG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L     +V   +   Q +L   +   SG++R+A T   G + L   L  F   +P I 
Sbjct: 62  LHLVEYAEKVEAIVHLAQEKLTGHNSALSGQIRLACTEGFGTHFLAAQLAHFCARHPHIT 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-S 182
           +  +  ++ +++    AD AI + +P   +  I  KL   H+  YA+P YL   R P+ +
Sbjct: 122 LDFLPLSRFVNLPKREADMAISIERPDSGNYAIA-KLCDYHLKLYASPAYLAE-RGPITA 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL---G 238
             +L  H  I +  DL+    E+  +L  +   +   R+S    N    ++  C     G
Sbjct: 180 ASDLQNHTFIGYVDDLV--FSEELRYLEQI---VTADRVSYRSTN----VVAQCSAVRQG 230

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +G+A+LP ++   + +LV ++ED +    + +   PE   N  ++KA R F+
Sbjct: 231 TGLAVLPCFLASPHADLVPVLEDQVLFKRSFWLVTPEERHNLARIKALRQFV 282


>gi|197121000|ref|YP_002132951.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196170849|gb|ACG71822.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 319

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 134/286 (46%), Gaps = 7/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+VF  VA +G F  A  +L LS  +++R I+ LE  VG +LF R  R +  TE G + 
Sbjct: 6   QLQVFVAVAEAGGFARAGARLRLSPPAVTRAIAALEGRVGARLFNRTTRTVRPTEAGLRF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 V   LET + E       PSG L +  ++  G+  L   ++ FL L+P +   L
Sbjct: 66  LDPARRVLADLETAEREAAGEGAAPSGHLTLTASVTFGRWALAPVVRAFLGLHPGVTASL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +++  +  D A+R+ + +  S L+ RK+  I     A+P YL+    P S   L
Sbjct: 126 VLVDRVVNLVEEGVDVAVRIGQ-LPDSDLVARKVGEIRRVLVASPAYLRAHGAPSSPARL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I F  L  +   ++ ++    RP+  P    L VN  L+ +     G GI L   
Sbjct: 185 RAHAAIAFTGL--QAGREWRFVDG-GRPVAVPVAPRLVVNDALAALDAAEAGDGITLALS 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           Y+V +      LV ++     P   V   +P A     K++AF +F
Sbjct: 242 YMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDF 287


>gi|118589549|ref|ZP_01546954.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118437635|gb|EAV44271.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 290

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 130/247 (52%), Gaps = 9/247 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   G F+HAA QL ++QS++S+ IS LET +G +LF R  R L LT +G   +
Sbjct: 1   MEVFVQVVELGGFSHAARQLAMTQSAVSKLISRLETRLGARLFNRSTRRLDLTAEGCVFY 60

Query: 68  RVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               E+   ++    Q  L E   +P G++R+ T+     ++L+  L  FL  YPDI ++
Sbjct: 61  ERAREILSSIDEAERQAGLGE---QPVGRIRLNTSASYATHILERVLPLFLEQYPDISLE 117

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L +  ID+  +  D  +R   P++ SSL+ RKL    M   A+P YL+   EP  + +
Sbjct: 118 IVLTDALIDLLAERTDVVVRA-GPLKDSSLVARKLGETPMLIVASPDYLRRAGEPSCVAD 176

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I F    P+ ++ + +L   D PI       +Q +   +I +  + G G+A L 
Sbjct: 177 LAGHRKIGF--TYPREVDTWRFLRN-DEPIAVCPPGRVQASDGEAIRRLAIHGLGLARLA 233

Query: 246 DYIVKDN 252
            + V+D+
Sbjct: 234 AFTVRDD 240


>gi|254449935|ref|ZP_05063372.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198264341|gb|EDY88611.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 301

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 140/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L +FL  +PDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLGEFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+ + ++ S+L  RKL        A+P Y +   +P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETSRRMVASPGYFEQYGQPQKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     +    W   +  P GE R       L VN   S++   + G GIA
Sbjct: 185 NDHKLLHYSNQSNSAV----W--KLKAPSGEKRQVRTAGWLTVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  D      +V  + D+   +  +Y  YP       K++AF +F+
Sbjct: 239 YLPSFLYADALAKGLVVEAIPDLPVDTQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|163732608|ref|ZP_02140053.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
 gi|161393968|gb|EDQ18292.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
          Length = 301

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F +V   G FT AA++L +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFAMVVDQGGFTDAAKKLGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L EFL  +PDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSEFLSDFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPGYFEKYGRPEKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NAHKLLHYSNQSSGNV----WKITA--PSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  D     LV   + D+   +  +Y  YP       K++AF +F+
Sbjct: 239 YLPSFLYADAMEKGLVEDAIPDLPMETQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|170701185|ref|ZP_02892156.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133891|gb|EDT02248.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 305

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 140/296 (47%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AAE LH+S++++++ +  LE  + ++L  R  R + +T  G 
Sbjct: 4   FDAMRAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVRLLNRTTRRINVTPDGI 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   + +   ++  +  L  +S  P G+LR+       + +L   L  FL  YPDIQ+
Sbjct: 64  AYYERVTRLLADMDDVETSLSSASAVPRGRLRVDVPSPFARLILIPALPAFLARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +DI  +  DC +R  +P    S++ R++  + +   A+P YL     P    
Sbjct: 124 DMGVSDRTVDIIGENVDCVVRGGEP-NDQSMVARRVADLSLGIVASPGYLALAGTPSHPA 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ F     G L P  M        V    G   ++    N+YL+     V 
Sbjct: 183 ELENSHHRIVGFSWGRAGKLYPLVMHRNGETVAVQ---GRYALAVDDGNAYLAA---GVA 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP Y+ K   +   LV + +D       +Y  YP     + KL+AF +++
Sbjct: 237 GLGIMWLPQYMAKAHLERGELVTLFDDWQLDPMPLYIAYPPNRHVSAKLRAFIDWV 292


>gi|306844815|ref|ZP_07477400.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306274987|gb|EFM56757.1| LysR family transcriptional regulator [Brucella sp. BO1]
          Length = 293

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 142/298 (47%), Gaps = 27/298 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179

Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            ++L++H LI +  DL+        P+   D+                  +V+S L  ++
Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+GI +L  +I + +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 226 AVRAGAGIGILHSFIARADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281


>gi|294142101|ref|YP_003558079.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328570|dbj|BAJ03301.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 289

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 140/276 (50%), Gaps = 11/276 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT AA++L +S + +SRQ+S LET +  KLF+R  R +++TE 
Sbjct: 2   FNWEGISEFVAVAETESFTQAAKRLGISTAQVSRQVSALETRLATKLFHRTTRKVSVTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +   +V   LE  +  +      P G+L+I   +  G+  L   + +F+  YP++
Sbjct: 62  GQVYFQHCRQVLDGLEEAERAITNLQSTPRGRLKITAPVTYGERTLAPLINDFITKYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL L N  +D+  +  D AIRL + ++ S+++ ++L     +  AAP YL     P S
Sbjct: 122 EVQLNLTNLRVDLIDEGYDLAIRLGQ-LEDSTMMAKRLGKRTHYVCAAPSYLSTYGIPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL++HN +  G L      D+       + +       L  NS  +++   V   GI 
Sbjct: 181 LSELEQHNCL-LGTL------DYWRFQDKGKAVNIRVRGNLNCNSGRALVDAAVKAIGIT 233

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPE 275
            LPDY V    ++  LV I+E        ++  YP+
Sbjct: 234 HLPDYYVLPYLESGELVSILEQHRPFDDGIWAVYPQ 269


>gi|319945066|ref|ZP_08019328.1| contact-regulated protein A [Lautropia mirabilis ATCC 51599]
 gi|319741636|gb|EFV94061.1| contact-regulated protein A [Lautropia mirabilis ATCC 51599]
          Length = 299

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 145/298 (48%), Gaps = 14/298 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L VF  V  SGSF+ AAE L L+ S +SR +  LE ++   L  R  R L LTE+GS+
Sbjct: 6   DELAVFVQVVESGSFSRAAESLGLANSVVSRTVKRLEEKLSTNLLNRTTRQLRLTEEGSR 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R   ++ H ++  + EL  S   P G LR+ +      + +   ++ F   YP + +Q
Sbjct: 66  FFRRARQILHDIDAAEAELLSSGGTPQGILRVDSATPTLLHRIAPLVRPFRERYPKVSLQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L      ID+     D AIR    +  S+L  R L    +   AAP YL     P S+ +
Sbjct: 126 LTSSEGYIDLIERRVDIAIRA-GSLHDSALRARHLFDSRLKLVAAPDYLARYGTPESVAD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H LI F +  P+ + ++ +  +   P    P++S    NS  +I Q C+ G+GIA L
Sbjct: 185 LSRHVLIGFSE--PRTLNNWPFADSGHAPYAAAPQLSA---NSGETIRQLCLSGNGIACL 239

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            D++V  +    +L  ++ D  +  +   +  Y      + K++AF +F+   A  W+
Sbjct: 240 SDFVVASDIAAGDLHELLPDRALNEAKPFHAVYYGDTTVSPKIRAFVDFL---AEHWR 294


>gi|70731392|ref|YP_261133.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345691|gb|AAY93297.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 296

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 146/297 (49%), Gaps = 16/297 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA   SF+ AA  L  S +++S+Q+  LE  +G  L  R  R ++L+E G +  
Sbjct: 7   MRTFRRVAERSSFSQAATDLGQSTAAVSKQVRQLEERLGSLLILRTTRRMSLSEAGQRYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+  +   Q    +P G+LR+   +  G  +L   L  F+  YP +Q+ L 
Sbjct: 67  SECCHLLDELDALERATQAGLHEPGGRLRVNAPLSFGLKVLSPILVAFMQRYPQLQVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D ++R+R+ ++ SSLI R+L  +     AAP YL+    P SI +L 
Sbjct: 127 LNDQVLDVVGEGFDVSLRIRRQLEDSSLIARQLGQVEQIICAAPAYLQAAGTPASIADLH 186

Query: 188 KHNLITFGDLIPKCMED-FNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
           +H  + +     +  E    W   +  P G+ R+        ++ L +    V G GI  
Sbjct: 187 QHRCLAY-----RLAEHPGRW--HLQGPEGQTRLELPVHFSADNSLLLADMLVAGLGIGA 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKAR 295
           LP ++ +   D+  L+R++ D   P   +Y  YP     + K++ F +F+   L+AR
Sbjct: 240 LPGFVAQPLLDSGQLLRVLPDQHLPGRHIYALYPSQRHLSQKVRVFVDFLVEALQAR 296


>gi|238794799|ref|ZP_04638401.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238725879|gb|EEQ17431.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 302

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 137/290 (47%), Gaps = 18/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA  GSFT AAE   L +SS+S++IS LE  +GI+L  R  R L LT  G +  
Sbjct: 8   MALFARVAECGSFTRAAEMAGLPKSSVSQRISQLEQNLGIRLLNRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ ++++
Sbjct: 68  VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLATDFQRQYPDVLLEVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  +  D A+R  KP Q SSLI R+L     +  A+P YL         ++LD
Sbjct: 128 VSDTMVDLVEEGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLTHPRQLD 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIAL 243
            H          +C+    W A + R   E    ++  L V   L   + C L G GI L
Sbjct: 187 TH----------RCIAHRAWQALILRREDEFYRWQVPALHVTDNLLYARECALAGGGITL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++ ++   N  LV ++         +Y  YP    N+  L  F + +
Sbjct: 237 LPAFLSREVVANRQLVEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVV 286


>gi|239503615|ref|ZP_04662925.1| transcriptional regulator [Acinetobacter baumannii AB900]
 gi|260555441|ref|ZP_05827662.1| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           19606]
 gi|260411983|gb|EEX05280.1| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           19606]
          Length = 303

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 146/280 (52%), Gaps = 11/280 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEEQLGVVLFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LRI+  +  GQ      + +F   + 
Sbjct: 61  DEGTLFYEHSRRALSEIQNAAALLDQRKINATGRLRISVPVLFGQLFAAPLMVKFAHQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++++D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRNVDLIEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNKAGPV 180

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             I++LD+H  I    FG      M+ +      D P      + L +N   +I    + 
Sbjct: 181 EHIEDLDQHATIADPHFGQ-----MQKWRLQKENDEPFFIKPKAKLLLNDLQAIKNAALA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           G+GIA LPD+++++   +  LV++++ + + +F ++  +P
Sbjct: 236 GAGIAWLPDWLIQNELQDGKLVQVLDTMSSTAFPIHLVWP 275


>gi|167554230|ref|ZP_02347971.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205321518|gb|EDZ09357.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 304

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            +++EL +H  + F +  P  +    W +A  D  + E  I C +  NS  ++ Q C+ G
Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IECGISSNSGETLKQLCLSG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|119773541|ref|YP_926281.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119766041|gb|ABL98611.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 313

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 140/296 (47%), Gaps = 15/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA  L ++++++SR+++ LE   G++L +R  R L LTE 
Sbjct: 1   MDLNRVQIFAAVVEHGSFTAAATALGITKATVSRKVAELEENAGVQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   S V  +L+  + +L  S     GKL+I   I+LGQ  L   L  FL  YPDI
Sbjct: 61  GSNYYHRVSRVLSELQQAETQLSASQQNIRGKLKIVCPIELGQLFLGSILARFLKQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI   L N+ +D+  +  D   ++ +P +   L    +V       A+P YL     P +
Sbjct: 121 QINTELTNRRVDVIEEDIDMLFQIAEP-KDPRLTCHAMVKADKMLLASPEYLAQFGTPKT 179

Query: 183 IQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             +L  H  I       D + K  +   W       + EP ++ L VN+     +  + G
Sbjct: 180 PADLAHHRAIRLVSAHIDGVWKIFDGKQW------QVYEP-VAQLTVNNVTLAREAAIEG 232

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GIA +P  I  +   +  LV ++ED       +   YP++     + + F  FI+
Sbjct: 233 LGIATVPTLIASEALASGKLVPVLEDYPMHQAKITLSYPQSAYLPRRYRVFIAFIY 288


>gi|332525731|ref|ZP_08401879.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332109289|gb|EGJ10212.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 299

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 132/270 (48%), Gaps = 7/270 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  +AR+G  T AA QL +  S++SR+ISGLE  +G  LF R   G   T +
Sbjct: 4   FDWNDLRAFLAMARTGRLTVAARQLGVDHSTLSRRISGLEAALGTPLFDRRPAGFVPTPE 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +          L ++  + SG +R+ +    G   L   L      +P +
Sbjct: 64  GERLLPDAEAMEAMALRLTGRLADAGQQLSGSVRVGSPEGFGTYFLGPRLATLATRHPQL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   +   +S   AD AI + +P Q   +   KLV   +  YA+P YL+  R    
Sbjct: 124 ELELVAMPRSFSLSKREADLAITMTRPAQ-GRVYAHKLVDYALGLYASPQYLQGRRAIRQ 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H  I + + +    E+ ++L  V R +    +  L++++ +S M     G+G+ 
Sbjct: 183 REDLTSHRWIGYVEEL-MWTEELDYLPQVQRGL----VPQLRISNVISQMMALAGGAGLG 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFC 272
           +LP ++ +  P LV+++ D +      Y+C
Sbjct: 238 VLPHFMARQQPGLVQVLADKVR-LVRSYWC 266


>gi|157369150|ref|YP_001477139.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320914|gb|ABV40011.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 295

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V  SGSF+ AAEQL  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVESGSFSRAAEQLDQANSVVSRTVKKLEAKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R   +V   +   +  L ES  +P G LR+     +  ++L   + EF  LYP
Sbjct: 61  QEGENYFRQVQKVLSDMAAAENALMESRQRPQGLLRVDAATPVVLHVLTPLVAEFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR+ + +  SSL  RKL+T +    A+P YL     P
Sbjct: 121 EMSLSLVSSENFINLIERKVDIAIRVGE-LTDSSLKARKLMTSYRRVLASPAYLAQYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             ++EL++H+ I F DL P       W LA  D    E     L  NS  +    C+ G+
Sbjct: 180 QKVEELEQHSCIGFNDL-PSLNR---WPLACADGRQLEI-TPGLTTNSGETQRHLCLHGN 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L ++++  +       P LV     V  P   VY+    A+ N  +L++F +FI
Sbjct: 235 GIACLSNFMIDADIERGDLVPILVEETLPVAMPVNAVYYS-DSAVSN--RLRSFIDFI 289


>gi|269962763|ref|ZP_06177105.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832518|gb|EEZ86635.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 300

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 137/285 (48%), Gaps = 8/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AA Q+ L++S +S++I+ LE E+G++L YR  R L LTE G  
Sbjct: 5   DDYIIFYHLVEQGSFSAAARQMELTKSVVSKRIAKLEQEIGVQLLYRTTRTLKLTEAGQS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  VY  + T +  +       SG ++I      G+ +L   + EF   YPDI I 
Sbjct: 65  FFEHARSVYQAVATAEESIVGLGKSLSGNIKITVPTISGELILPTVISEFNQAYPDINID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+  DI  +  D AIR    +  SSLI RKLV  +    A+P ++    +P +  +
Sbjct: 125 MELDNRFADIVNEGFDLAIRT-GVLPDSSLIARKLVDANWIVCASPRFVAKHGKPKTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L KHN + +        E   W    D  + + ++   L  N+  ++    +LG GI  +
Sbjct: 184 LTKHNCLVYAYQETGACE---WAFKRDDEVYQVKVDGNLCTNNSSALRNVALLGQGIIYV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P  +V ++     L+++ +D       +Y  YP   +   K+K F
Sbjct: 241 PRVLVYEDLQQGKLIQLFKDETAKCLGIYAVYPYTRQQPEKIKIF 285


>gi|238797536|ref|ZP_04641034.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC
           43969]
 gi|238718677|gb|EEQ10495.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC
           43969]
          Length = 302

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 138/287 (48%), Gaps = 20/287 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA  GSFT AAE   L +SS+S++IS LE  +GI+L  R  R L LT  G +  
Sbjct: 8   MALFARVAECGSFTRAAEMADLPKSSVSKRISQLEQNLGIRLINRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + LQ     PSG+LRI+T   LG  L+     +F   YPD+ ++++
Sbjct: 68  VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLVARLATDFQRQYPDVLLEVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186
             +  +D+  +  D A+R  KP Q SSLI R+L     +  A+P+YL     PLS   +L
Sbjct: 128 ASDTMVDLVEEGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPNYLAQ-HPPLSHPSQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIA 242
           DKH+          C+    W A + R  GE    ++    V   L   + C L G GI 
Sbjct: 186 DKHH----------CIAHRAWQALILRCEGEFYRWQVPMQHVTDNLLYARECALAGGGIT 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LLP ++ ++   N  L+ ++         +Y  YP    N+  L  F
Sbjct: 236 LLPAFLSREVVANRQLIEVLPQWRPEGNELYLVYPSRKLNSPALSCF 282


>gi|291616377|ref|YP_003519119.1| YafC [Pantoea ananatis LMG 20103]
 gi|291151407|gb|ADD75991.1| YafC [Pantoea ananatis LMG 20103]
          Length = 312

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 141/297 (47%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+VF  V  SGSF+ AAE L ++ S++SR I  LET++G+ L  R  R L LT
Sbjct: 1   MKASSEELKVFVSVVESGSFSRAAETLEMANSAVSRTIKKLETKLGLALLTRTTRNLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +  +        +   + EL ES   P G LRI     +  +L+   +K F   YP
Sbjct: 61  QEGERYFQQVQHFLQVMTAAENELIESRDVPKGLLRIDAATPVILHLIMPMIKSFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + LI     I++     D AIR    +  S L  R L   +    A+P YLK    P
Sbjct: 121 DIALSLISSENFINLIERKVDVAIRA-GSLTDSGLRARLLFISYRRLIASPDYLKKHGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L   +LD H  + F D  P+      W    +        S L  NS  +I Q C+ G+G
Sbjct: 180 LRAADLDNHQCLGFID-APRLN---RWPVACEGGELYGIRSELDSNSGETIKQLCLEGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L DY+V    +  +LV IM D    V  P   VY+     L  T +++AF +F+
Sbjct: 236 IACLSDYMVHKEIEEGSLVEIMADQRLPVEMPFNAVYYS---DLGVTQRVRAFIDFL 289


>gi|163751657|ref|ZP_02158877.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161328483|gb|EDP99638.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 289

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 152/292 (52%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT A+++L +S + +SRQ+S LET +  KLF+R  R +++TE 
Sbjct: 2   FNWEGVSEFVAVAEAESFTKASQRLGISTAQVSRQVSALETRMATKLFHRTTRKVSVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +      P G L+I   +  G+  L   + +F+  YP++
Sbjct: 62  GKIYYQHCRQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGEGTLAPLINDFIAKYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I++ L N+ +D+  +  D A+RL + ++ SS++ ++L +  ++  A+P YL     P S
Sbjct: 122 EIKITLTNQKLDLIDEGFDLAVRLGQ-LEDSSMMAKRLGSRTIYVCASPDYLSKYGLPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + EL++HN +  G L      D+ W    +      R+   L  NS  +++   +   GI
Sbjct: 181 LSELEQHNCLQ-GTL------DY-WRFQENGKTRNIRVRGNLTCNSGHALVDAAIKSIGI 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V    ++  LV I+E    P   ++  YP     + K++   +++
Sbjct: 233 VQLPDYYVLPFIESGQLVPILEHNRQPDEGIWALYPHNRHLSPKVRMLLDYL 284


>gi|126659789|ref|ZP_01730916.1| transcriptional regulator [Cyanothece sp. CCY0110]
 gi|126618941|gb|EAZ89683.1| transcriptional regulator [Cyanothece sp. CCY0110]
          Length = 289

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 137/286 (47%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF  AA ++ LS+S++++ +  LE  +G++L YR  R +T T  G   +
Sbjct: 1   MRAFTYVIEEGSFAAAARKMKLSRSAVNKLVINLENYLGVQLLYRTTRQVTPTATGQAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   LE  ++ + +   +P G L+I   +  G   L   + +F+  Y  I+IQL 
Sbjct: 61  ERCLEILSNLEEAELAVSQQQNEPLGSLKINAPMSFGITRLGTIIAKFMTRYSKIKIQLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ ID   +  D  IR+  P QS +L  RK+ TI     A+PHYLK    P  I EL 
Sbjct: 121 LEDRFIDPISEGYDLVIRIGSPPQSPNLFVRKITTIARVICASPHYLKTNGIPEKISELK 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ + +G L+      F +    +    E        N+   +    + G GI +LPD+
Sbjct: 181 QHSCLHYGYLLSGTQWQFIYQGKQENITIEGSFCS---NNGEVLRDAALQGLGIVILPDF 237

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IV    ++ +L  I+     P   +   YP     + K+K F  F+
Sbjct: 238 IVNQYLESGDLQIILSSYKIPELDLSIIYPINRHLSTKIKLFIEFL 283


>gi|114769755|ref|ZP_01447365.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114549460|gb|EAU52342.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|161170251|gb|ABX59221.1| transcriptional regulator [uncultured marine bacterium EB000_55B11]
 gi|297183780|gb|ADI19903.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 303

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 143/292 (48%), Gaps = 16/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SG FT AA +L LS+SS+S+ I+ LE+ +G+ L  R  R ++ TE G   
Sbjct: 6   EMEIFVAVVDSGGFTEAANKLRLSKSSVSKHIASLESRLGVTLLNRTTRNVSATEIGINY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   +   +++   + ++    +  G LR++ + D G N L   +  F+  YP I+I +
Sbjct: 66  YQKCIKFLEEIQDADLSVKAMQTEAQGILRVSVSNDFGSNHLINCITPFIKAYPKIKIHM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LDN+ +D+  +  D A+R+   +  SS+  +K+    +    +  YL +   P  I +L
Sbjct: 126 TLDNRFVDLVSEGFDLAVRIGN-LSDSSMKAKKIANTKLAIVGSRDYLASNGIPKKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
             H L+ +        E  N    +  P GE R       L VN   S++     G G+A
Sbjct: 185 SDHQLLNY------SFEKSNNFWRIPGPDGEERQIRGKDNLSVNDGKSLLMAAEAGLGLA 238

Query: 243 LLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP +I    +KD  +L +I+ ++  P   VY  YP +     KL+ F +++
Sbjct: 239 YLPCFIYGEKIKDG-SLQKILTNIKFPELGVYAVYPSSDYIPPKLRVFIDYL 289


>gi|160873499|ref|YP_001552815.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160859021|gb|ABX47555.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315265728|gb|ADT92581.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 299

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 144/299 (48%), Gaps = 15/299 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A+++L LS+S++S++I+ LE  +GI+L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +            E     + E    P G LRIA  +  G+  +   + EFL  YP IQ+
Sbjct: 64  RYFDYVRPAVKLAEEGLDAISELQQAPQGSLRIAAPMVFGRLHIAPLIPEFLRRYPKIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P + Q
Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLARHAAPQTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           +L +HN + +        +   W  T   P G  RI      QVN+  +I Q  + G GI
Sbjct: 183 QLSQHNCLFYSYF----RDGVEW--TFLSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGI 236

Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           A LP ++V  +    R   ++ D   P   +Y  YP+      K+     F+  FL  R
Sbjct: 237 ANLPRFMVDTDLQAGRLQALLADHPLPEHGIYAVYPQRKHLPTKVNVLIEFLIEFLAKR 295


>gi|172064818|ref|YP_001815530.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997060|gb|ACB67977.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 305

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 140/292 (47%), Gaps = 10/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE+ +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLESRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     EVY + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTISEQAGEVYRRAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D A+R+   +  SSL+ R+L  +     A+P YL+    P   
Sbjct: 126 IDLHLSDASVDLIAEGFDAALRI-AALPDSSLVARRLCAVTQFVVASPEYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGI 241
           +EL     +++       +    W  T D    EP +    L+V +  +++   + G  I
Sbjct: 185 RELADRPCLSYAYRARSAV----WRFTNDVGDEEPVMPTGPLRVTNSDALLPTLLDGLAI 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++ 
Sbjct: 241 AELPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVTALSDYF 292


>gi|317402162|gb|EFV82753.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 310

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 145/283 (51%), Gaps = 9/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ +  V   GSF  AA+++  ++S ++RQI+ LE + G++L  R  R L++T+ G   +
Sbjct: 7   MQTYVRVVELGSFAAAADKMGQARSVVTRQIAFLEEKYGVRLLNRTTRKLSMTDAGRAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   ++ LQ     PSG+LRI+  +  G   L   + E+LL YPD+ I L 
Sbjct: 67  ERVRPILAEVTDLELSLQAEGQAPSGRLRISAPVSFGILHLGPAIAEYLLRYPDVVIDLD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  D  D A+R+  P+Q SSL+ R L    +   AAP YL++   PL  ++L 
Sbjct: 127 LNDRVVDLVEDGYDVAVRI-GPLQDSSLVARPLAPQQLLVCAAPAYLESHGVPLVPEDLK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +            W    D      R+ + L+ N+   +    + G G+ L P+
Sbjct: 186 QHRCLHYA----YASTGNEWHFEKDGVSHLVRVNAALRANNGDVLRTAALAGHGVILQPE 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++V D+     LV +++D +    ++Y  YP     + K+++F
Sbjct: 242 FLVGDDVRAGRLVALLQDYVHTPISMYAAYPHRRFLSPKVRSF 284


>gi|241765517|ref|ZP_04763480.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241364701|gb|EER59720.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 308

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 141/296 (47%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AA  LH+S++++++ +  LE  + ++L  R  R L LT  G+
Sbjct: 4   FDAMQAFARVVEAGSFTKAAHTLHMSRTTVTQLVQQLEARLRVRLLNRTTRRLHLTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L   +  L  +S  P G+LR+     L + +L   L  F   YPDIQ+
Sbjct: 64  AYYERVVRLLADLHDAETSLSAASAVPRGRLRVDVPSPLARTVLIPALPAFHARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R    I   SLI R +  + +  +AAP YL+    PL  Q
Sbjct: 124 DMGVSDRKVDMVGEGVDCVLR-GGAITDPSLIARHVGDLQLQVFAAPAYLQRAGTPLHPQ 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            L+K  H ++ F     G  +P  +   +    V     E R  C  V+   + +   + 
Sbjct: 183 ALEKTHHRIVGFLWERTGRPLPYALRRGSERVRV-----EGRYVC-AVDDGNAYVAAGLA 236

Query: 238 GSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LPDY+   ++ +  LV + ED       +Y  YP     + KL+ F +++
Sbjct: 237 GMGILCLPDYLSAPLRASGELVPLFEDWHFDPLPLYLAYPPNRHVSAKLRVFMDWV 292


>gi|85712422|ref|ZP_01043471.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
 gi|85693700|gb|EAQ31649.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
          Length = 292

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 143/300 (47%), Gaps = 21/300 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +  F  VA++ SFT AA+QL LS + +SR I+ LE  + + L YR  R ++LTE+GS
Sbjct: 4   WQGISEFVAVAQTSSFTSAAKQLGLSVAQVSRNIAALEQRLKLPLLYRSTRSVSLTEEGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L      +Q+ S KP G +R+   +  G++++   + +FL  YPD ++
Sbjct: 64  LYLPHCQHLVASLNDADQAIQQRSEKPQGLIRLTAPVFYGEHVIAPLVNDFLNQYPDCRL 123

Query: 125 QLILDNKDIDISMDYADCAIRL----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              L N  +D+   + D AIRL       +++S L +R+   +      AP Y +   EP
Sbjct: 124 DFNLTNDTLDLIEGHYDLAIRLGHLGTPRLKASPLGRRRHFLV-----GAPAYFERFGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGS 239
             +  L  H  +T G L        +W   VD  +   + + L   NS L+I      G 
Sbjct: 179 THLASLADHRCLT-GTLK-------SWRFQVDGKVKTVQPNALVHCNSGLAIKDAVCKGL 230

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA+LPDY V D      L  +M +   P   ++  YPE+     K++   +F+ +K  D
Sbjct: 231 GIAILPDYYVADELEAGVLQEVMTEYRQPDDGIWALYPESRHRIAKVRVLIDFLKVKLTD 290


>gi|84515733|ref|ZP_01003094.1| transcriptional regulator, LysR family [Loktanella vestfoldensis
           SKA53]
 gi|84510175|gb|EAQ06631.1| transcriptional regulator, LysR family [Loktanella vestfoldensis
           SKA53]
          Length = 301

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 137/291 (47%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKRMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L  FL  YPDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQTAPSGLLRISVATDFGVNHLSQVLGAFLGAYPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ S+L   KL        A+P Y      P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRAHKLTETTRRMIASPGYFTQYGRPNKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     +    W  T   P GE R       L VN   S++  C+ G GIA
Sbjct: 185 NNHKLLHYSNQSNSAV----WKLTA--PSGEKRQVRTAGWLTVNDGQSLLNACIGGLGIA 238

Query: 243 LLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  D      + E   D+   +  ++  YP+      K++AF +F+
Sbjct: 239 YLPSFLYADAMRKGLVAEAIPDLPIETQGIFAVYPQGHFTQPKVRAFVDFL 289


>gi|254237054|ref|ZP_04930377.1| hypothetical protein PACG_03086 [Pseudomonas aeruginosa C3719]
 gi|126168985|gb|EAZ54496.1| hypothetical protein PACG_03086 [Pseudomonas aeruginosa C3719]
          Length = 307

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 144/296 (48%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R L LT  G+
Sbjct: 4   FDAMQAFARVVDTGSFTKAAETLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +L+  +  L  +++ P G+LRI     L + LL   L EF   YP+IQI
Sbjct: 64  AYYERVVRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPEIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +D+  +  DC IR  + ++  SL+ R++  + +  YAAP YL+    P   +
Sbjct: 124 DLGVSDRLVDLIDENVDCVIRGGE-LRDQSLMARRVGDLQLGVYAAPAYLQRAGVPSHPR 182

Query: 185 EL-DKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL D H  I        G  +P  M        V    G   ++    N+YL+     + 
Sbjct: 183 ELEDSHQRIVGFLWARTGKALPYAMRRGGECLRV---AGRHVLAVDDGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP Y+ ++      L+ + ED       +Y  +P     +GKL+ F  ++
Sbjct: 237 GLGILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWV 292


>gi|77361138|ref|YP_340713.1| transcriptional regulator LysR [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876049|emb|CAI87271.1| putative transcriptional regulator LysR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 288

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 148/292 (50%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA + SFT A++++ +S + +SRQIS LE  + +KLFYR  R ++LTE+
Sbjct: 1   MQWEGISEFVHVAENASFTQASKKMAISTAQVSRQISALENRLNVKLFYRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    V   L+  +  +      P GK+++  ++  G+  +   + +F+L Y ++
Sbjct: 61  GRVFYQHCRSVLDGLDAAERAITNLQTTPQGKIKLTASVTYGEQQVLPLVSDFMLQYSEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +   L N+ ID+     D AIR+ K +  SS++ +KL T   +  A+P YL+    P +
Sbjct: 121 AVSAYLSNQQIDLVEGGYDLAIRIGK-LADSSMMAKKLGTRTSYVCASPEYLEKHGIPHA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           I EL KH+ +  G L      D+ W           R++  L+ NS  S+    + G GI
Sbjct: 180 ISELSKHSCL-LGTL------DY-WHFMESGKEKNIRVAGKLRYNSGYSLADAALKGLGI 231

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V++   +  L+ +++    P   ++  YP     + K++   +++
Sbjct: 232 VQLPDYYVQNHLQSGELITLLDSYRVPDEGIWAIYPHNRHLSPKIRLLVDYL 283


>gi|254466186|ref|ZP_05079597.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206687094|gb|EDZ47576.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 297

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 142/305 (46%), Gaps = 23/305 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   +
Sbjct: 1   MEAFANVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V +        +      PSG LRI+   D G N L   L +FL  +PDI + ++
Sbjct: 61  DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPDITVNMV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +++  +  D A+R+ + ++ SSL  RKL        A+P YL+    P  I EL+
Sbjct: 121 LNNRYVELISEGFDMAVRIGE-LEDSSLRARKLTETTKRMIASPAYLEKFGRPQKIDELN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243
            H L+ +       +    W  T   P GE R       L VN   S++   + G GIA 
Sbjct: 180 NHKLLHYSSQSSGNV----WKITA--PSGEKRQVRTSGWLSVNDGQSLLTAAISGLGIAY 233

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIFLKARD-- 296
           LP Y+  +      ++EDV+ PS  V     Y  YP       K++AF +F+     D  
Sbjct: 234 LPSYLYAEAME-EGLVEDVM-PSLPVETQGIYAVYPPGKFTQPKVRAFIDFLVAAFADRD 291

Query: 297 ---WK 298
              WK
Sbjct: 292 PSEWK 296


>gi|239820048|ref|YP_002947233.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239804901|gb|ACS21967.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 303

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 144/292 (49%), Gaps = 9/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F  VA SGSF+  A+ L LS+ ++S+ I+ LE   G++L  R  R ++LT+ G  
Sbjct: 5   DLLRTFSEVASSGSFSRTAKHLALSRGTVSKYIAALEHRFGVRLLNRTNRAVSLTDAGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   +  +    + T+ ELQ+ +  PSG+LR++    +    L   + +FL  YP++ I 
Sbjct: 65  LLDRSRPILELADVTRAELQDRARVPSGRLRVSAPHGMDLTQLPALINDFLGHYPEVSIS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L N+ +D++ +  D A+R   P  + +LI RKL+ + +   AAP Y +    P    E
Sbjct: 125 LVLSNRLVDLTEEGVDIALRF-APSANENLIVRKLMPMALSVCAAPMYWRKHGVPAHPDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  +    L P       W    DR PI       L       ++Q  +LG+G+  L
Sbjct: 184 LAHHAALISTQLNPLP----KWRFEADRQPIEVAVRGRLDATEASPLIQAALLGAGVVYL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +++   ++  LV ++   +     +   Y +   +T   +AF +F+ ++
Sbjct: 240 PSVMLEPYIESGRLVPVLPTFVRSDMWLSAVYLQRRHSTAVQRAFLDFLAVR 291


>gi|197251911|ref|YP_002145256.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197215614|gb|ACH53011.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 304

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            +++EL +H  + F +  P  +    W +A  D  + E  I C +  NS  ++ Q C+ G
Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IKCGISSNSGETLKQLCLNG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIAWGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|91223611|ref|ZP_01258876.1| AphB/LysR family protein [Vibrio alginolyticus 12G01]
 gi|91191697|gb|EAS77961.1| AphB/LysR family protein [Vibrio alginolyticus 12G01]
          Length = 291

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S +  +L T   E+ +     SGK++I+   +L + ++      F+  YPDI I+
Sbjct: 64  FYHECSPLLQRLTTAAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNSFMKQYPDINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N    +     D   R+  P + SSLI RK+  +     A+P YL +   P   +E
Sbjct: 124 LTTENNADKLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPDYLTSNPAPHHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+L+    LI   + +    + V+   G       Q N+   +   C  G GI L+P
Sbjct: 183 LSNHSLLKGYPLIKWTLINSKGESVVNVDRGR-----FQANALNVVRSACSEGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++K   ++ +LVRI+ D       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMIKEYIESGDLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|207727996|ref|YP_002256390.1| hypothetical protein RSMK04389 [Ralstonia solanacearum MolK2]
 gi|206591240|emb|CAQ56852.1| hypothetical protein RSMK04389 [Ralstonia solanacearum MolK2]
          Length = 305

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 21/286 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAAARLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S     +E       E    P GK+R+    D+G+ L+   +  F+  YPDI
Sbjct: 61  GQSLYQVASHALEDIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMREYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDMVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQRQGVPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
           +++L  H+ + F         +  W     R +G   +  + V + L+      L     
Sbjct: 180 VRDLGHHSCLDFRG---TGRGETQW-----RLVGPDGLKTVAVRARLNADSLSYLETLIA 231

Query: 238 -GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
            G+GI  LP Y   + + N   P LVR++ D  T    +    P A
Sbjct: 232 SGAGIGPLPLYAGGVARANAPLPRLVRVLPDYATSGEPLNLVTPTA 277


>gi|254228478|ref|ZP_04921904.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262393653|ref|YP_003285507.1| putative LysR family transcriptional regulator [Vibrio sp. Ex25]
 gi|151939066|gb|EDN57898.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262337247|gb|ACY51042.1| putative transcriptional regulator LysR family [Vibrio sp. Ex25]
          Length = 291

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S +  +L T   E+ +     SGK++I+   +L + ++      F+  YPDI I+
Sbjct: 64  FYHECSPLLQRLTTAAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNSFMKQYPDINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N    +     D   R+  P + SSLI RK+  +     A+P YL +   P   +E
Sbjct: 124 LTTENNADKLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPDYLASNPAPNHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+L+    LI   + +    + V+   G       Q N+   +   C  G GI L+P
Sbjct: 183 LSNHSLLKGYPLIKWTLINSKGESVVNVDRGR-----FQANALNVVRSACSEGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++K   ++ +LVRI+ D       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMIKEYIESGDLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|120598650|ref|YP_963224.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120558743|gb|ABM24670.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
          Length = 292

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 151/296 (51%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSTLENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           EL++HN +         + + N+   V+   G  R       L  NS  ++    + G G
Sbjct: 183 ELNQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231

Query: 241 IALLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LPDY ++++    R++  + T       ++  YP+    + K++   +++  K
Sbjct: 232 IVQLPDYYIEEDIQAGRLLSFLDTHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287


>gi|62178822|ref|YP_215239.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62126455|gb|AAX64158.1| putative transcriptional regulator, LysR family [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322713273|gb|EFZ04844.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 304

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            +++EL +H  + F +  P  +    W +A  D  + E  I C +  NS  ++ Q C+ G
Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IECGISSNSGETLKQLCLNG 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKAIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|254295197|ref|YP_003061220.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254043728|gb|ACT60523.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 302

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F     SGSFT AA+QL L++S+ISR+I  LE  +  +L  R  R +TLTEQG 
Sbjct: 4   YEDIEAFVRTIESGSFTAAAKQLGLAKSAISRRIQDLEARLDTQLIIRTTRKITLTEQGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      + H  +  +  +  +    +G +R+   +  G N L     EFL   P+I++
Sbjct: 64  TLFERAKILLHDWQEAEASITSNQAALAGTIRVTAPLTFGVNHLSAAFIEFLDANPNIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  D AIR+ + +  SSLI RKL  I   A A+P YL     P + +
Sbjct: 124 DIDFSDRKVDLVSEGMDLAIRIGQ-LPDSSLIARKLAPIRAIAAASPEYLAKNGTPRTPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDF-NWLATV-DRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           +L K N + +G      ++D  +W  T  D  +GE  + S L+  +   +    + G G+
Sbjct: 183 DLQKLNELRYG------LKDVRSWKYTAPDGSVGEIEMPSVLKSTNGDFLKDAAIAGKGV 236

Query: 242 ALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYP 274
            + P +I    +KD   LV+I+ D   P    Y  YP
Sbjct: 237 VIEPSFILCQALKDG-RLVQILPDYKWPEIGAYAIYP 272


>gi|322614536|gb|EFY11465.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620054|gb|EFY16926.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623349|gb|EFY20188.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629353|gb|EFY26132.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632073|gb|EFY28827.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637189|gb|EFY33891.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640302|gb|EFY36962.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645931|gb|EFY42451.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650083|gb|EFY46499.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652574|gb|EFY48924.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660384|gb|EFY56620.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664537|gb|EFY60730.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669410|gb|EFY65560.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670956|gb|EFY67089.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678805|gb|EFY74860.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681834|gb|EFY77859.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687960|gb|EFY83926.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194314|gb|EFZ79509.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197730|gb|EFZ82862.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203474|gb|EFZ88499.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206781|gb|EFZ91734.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213400|gb|EFZ98201.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214693|gb|EFZ99444.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221454|gb|EGA05870.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226228|gb|EGA10444.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229984|gb|EGA14104.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233723|gb|EGA17812.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238583|gb|EGA22641.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244271|gb|EGA28280.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246575|gb|EGA30550.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252185|gb|EGA36038.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258054|gb|EGA41733.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259848|gb|EGA43479.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265137|gb|EGA48636.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272700|gb|EGA56107.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 304

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            S++EL +H  + F +  P  +    W +A  D  + E  + C +  NS  ++ Q C+ G
Sbjct: 180 ESVEELKRHLCLGFSE--PVSLN--TWPIACRDGQLHE--VECGISSNSGETLKQLCLNG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|168819172|ref|ZP_02831172.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205344112|gb|EDZ30876.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320084505|emb|CBY94297.1| probable RuBisCO transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 304

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 148/299 (49%), Gaps = 19/299 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            S++EL +H  + F + I       N W +A  D  + E  I C +  NS  ++ Q C+ 
Sbjct: 180 ESVEELKRHLCLGFSEPI-----SLNTWPIACSDGQLHE--IKCGISSNSGETLKQLCLN 232

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 233 GNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|331005724|ref|ZP_08329086.1| transcriptional regulator, LysR family [gamma proteobacterium
           IMCC1989]
 gi|330420477|gb|EGG94781.1| transcriptional regulator, LysR family [gamma proteobacterium
           IMCC1989]
          Length = 297

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 147/293 (50%), Gaps = 9/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSF+  A  L +S S++SRQIS LE E+G +LF R  R  +LTE G    
Sbjct: 7   IELFVKVVEEGSFSAVARSLGISPSAVSRQISQLEKELGGRLFQRTTRKQSLTEAGEVYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   +E  ++ ++  + KPSG LRI    D     ++  L +FL LYP++QI L 
Sbjct: 67  QHALQLVEDIEVAKLAVRGLTDKPSGNLRITAEADFALAFIEPILPDFLALYPEVQICLH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+  +  D AIR+   ++ SSL  RKL        A+P YLK   EP   ++L 
Sbjct: 127 MSSNLQDLIDNNLDLAIRVGH-LRDSSLTARKLADSTSVVCASPAYLKKYGEPTHPRDLK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ ++F     +   ++       +PI  P    L VNS   + +  + G GI L+P +
Sbjct: 186 SHSCLSFNT---QLGSNYWRFEAEQKPITVPVSGRLNVNSVSFLRKAALNGLGIILIPTW 242

Query: 248 IVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +++D     +L+ +++D  +I  S  +   +    +   K +A  NF+  + R
Sbjct: 243 VIRDELTQQHLIPVLQDFPLIPHSTPINAIFTHKRQLAPKTRALINFLSERIR 295


>gi|184157691|ref|YP_001846030.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332876376|ref|ZP_08444145.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209285|gb|ACC56683.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322507998|gb|ADX03452.1| Transcriptional regulator LysR family [Acinetobacter baumannii
           1656-2]
 gi|323517586|gb|ADX91967.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735386|gb|EGJ66444.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 301

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 150/281 (53%), Gaps = 13/281 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEEQLGVALFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGTLFYEHSRRTLSEIQNAAALLDQRKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++++D+  +  D  IR+     ++ L+ + +    M   A+P YL N R P
Sbjct: 121 DLQLEISFNDRNVDLIEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYL-NKRGP 179

Query: 181 LS-IQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +  I++LD+H  I    FG      M+ +      D P+     + L +N   +I    +
Sbjct: 180 VEHIEDLDQHATIADPHFGQ-----MQKWRLQKENDEPLFIKPKAKLLLNDLQAIKNAAL 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
             +GIA LPD+++++   +  LV+++E + + +F ++  +P
Sbjct: 235 ADAGIAWLPDWLIQNELQDGKLVQVLETMSSTAFPIHLVWP 275


>gi|163748651|ref|ZP_02155904.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161331761|gb|EDQ02565.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 314

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 141/293 (48%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L L+++++SR+I+ LE + G++L +R  R L LTE 
Sbjct: 1   MDLNRVQMFDQVVEQGSFTAAAKALGLTKATVSRKIAELEADAGVQLLFRTTRKLKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +     +   L+  +++L  S     GKLRI   I+LGQ  L      FL  YPDI
Sbjct: 61  GSAYYNRVHRILADLKQAEVQLSASQEVIKGKLRIVCPIELGQLFLGKVFARFLGRYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++      + L    L+       A+P YL     P +
Sbjct: 121 SIEAELSNRKVDMIAEDVDILFQITS-TTDTRLQSYDLLNTTKTLMASPEYLTRYGTPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            Q+L++H  I     +     D +W L   D+ +     + L VN+     +  + G GI
Sbjct: 180 PQDLNQHKAIK----LKSAHIDASWTLFDGDKWVTLDPEAQLTVNNATLAREAAIEGLGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A +P+ I +   DN  L+ ++ED       V   +P+      K + F  FI+
Sbjct: 236 ATVPNIIAQQALDNKQLIPLLEDFPMTQTKVIMSFPQRAYLPKKYRVFIEFIY 288


>gi|71277995|ref|YP_267565.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71143735|gb|AAZ24208.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 289

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 144/292 (49%), Gaps = 17/292 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA + SFT A++++ +S + +SRQIS LE  + IKLFYR  R ++LTE+G 
Sbjct: 4   WEGISEFVYVAENESFTLASKKMAISTAQVSRQISALEKRLNIKLFYRTTRKVSLTEEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    V   L+  +  +     KP GK+++   +  G+  +   +  FL  Y D+++
Sbjct: 64  IFYQHCRSVLDGLDAAERAITNLQSKPQGKIKLTAPVTYGEKQILPLVNNFLKQYSDVEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+ +D+  D  D AIRL   +  SS++ +KL        A+P YL     P SI 
Sbjct: 124 SAYLSNQRVDLVEDGYDLAIRLGN-LSDSSMMAKKLGERSNFVCASPLYLHKHGIPHSIS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           EL+KH+          C+   N  W           RI+  L+ NS  S+    + G GI
Sbjct: 183 ELNKHS----------CLLGTNNYWHFRESDKEKSVRITGRLRYNSGYSLTDAALKGLGI 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY VK    +  LV ++++   P   ++  YP+    + K++   +++
Sbjct: 233 VQLPDYYVKQHLQSGELVTLLDNYRAPDEGIWAIYPQNRHLSPKIRLLVDYL 284


>gi|161615584|ref|YP_001589549.1| hypothetical protein SPAB_03359 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|200389332|ref|ZP_03215943.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|161364948|gb|ABX68716.1| hypothetical protein SPAB_03359 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|199601777|gb|EDZ00323.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 304

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 148/299 (49%), Gaps = 19/299 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            S++EL +H  + F + I       N W +A  D  + E  I C +  NS  ++ Q C+ 
Sbjct: 180 ESVEELKRHLCLGFSEPI-----SLNTWPIACSDGQLHE--IECGISSNSGETLKQLCLN 232

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 233 GNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|107103691|ref|ZP_01367609.1| hypothetical protein PaerPA_01004762 [Pseudomonas aeruginosa PACS2]
          Length = 307

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 144/296 (48%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R L LT  G+
Sbjct: 4   FDAMQAFARVVDTGSFTKAAEMLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +L+  +  L  +++ P G+LRI     L + LL   L EF   YP+IQI
Sbjct: 64  AYYERVVRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPEIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +D+  +  DC IR  + ++  SL+ R++  + +  YAAP YL+    P   +
Sbjct: 124 DLGVSDRLVDLIDENVDCVIRGGE-LRDQSLMARRVGDLQLGVYAAPAYLQRAGVPSHPR 182

Query: 185 EL-DKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL D H  I        G  +P  M        V    G   ++    N+YL+     + 
Sbjct: 183 ELEDSHQRIVGFLWARTGKALPYAMRRGEECLRV---AGRHVLAVDDGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP Y+ ++      L+ + ED       +Y  +P     +GKL+ F  ++
Sbjct: 237 GLGILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWV 292


>gi|323495787|ref|ZP_08100857.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323319254|gb|EGA72195.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 289

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 149/291 (51%), Gaps = 13/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA++L  S + +SR+IS LE  + +KLF R  R ++LTE G
Sbjct: 3   NWEGVSEFVGVAETQSFTAAAKKLDTSVAQVSRRISSLEERLAVKLFNRTTRRVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++   ++   LE  ++ + +    P G L++   +  G+  L   L +FL  YP + 
Sbjct: 63  QLYYQQCKQLVEGLELAELAVTQMQSTPKGLLKVTAPVTFGEQQLAPLLHQFLERYPQVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L N+ +D+     D AIRL + +Q SSLI ++L +  +   A+P YL+   EP ++
Sbjct: 123 LDLMLTNQKLDLIEMGVDVAIRLGR-LQDSSLIAKRLSSRQLFVCASPSYLEQYGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL  H  +  G +      D+ W     +     R+S  +  NS  +++   + G G+ 
Sbjct: 182 SELSHHQCLV-GSV------DY-WRFRDSKSEKSLRVSGRIHCNSGYAVLDAAIRGLGLV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY V+   ++  LV ++ +       ++  YP+    + K++   +++
Sbjct: 234 QLPDYYVQPALESGELVEVLSNYRDEREGIWALYPQNRNLSPKVRLLIDYL 284


>gi|224582097|ref|YP_002635895.1| hypothetical protein SPC_0266 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224466624|gb|ACN44454.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 304

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            +++EL +H  + F +  P  +    W +A  D  + E  I C +  NS  ++ Q C+ G
Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IECGISSNSGETLKQLCLNG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|16763639|ref|NP_459254.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167995084|ref|ZP_02576174.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168239989|ref|ZP_02664921.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261347|ref|ZP_02683320.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194448830|ref|YP_002044240.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197262313|ref|ZP_03162387.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16418755|gb|AAL19213.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194407134|gb|ACF67353.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197240568|gb|EDY23188.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205327153|gb|EDZ13917.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205340145|gb|EDZ26909.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205349718|gb|EDZ36349.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|267991943|gb|ACY86828.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156877|emb|CBW16353.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911221|dbj|BAJ35195.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224910|gb|EFX49971.1| Transcriptional regulator LysR family, yafC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323128571|gb|ADX16001.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987202|gb|AEF06185.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 304

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            +++EL +H  + F +  P  +    W +A  D  + E  I C +  NS  ++ Q C+ G
Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IKCGISSNSGETLKQLCLNG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|163801909|ref|ZP_02195806.1| AphB/LysR family protein [Vibrio sp. AND4]
 gi|159174417|gb|EDP59221.1| AphB/LysR family protein [Vibrio sp. AND4]
          Length = 291

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S +  +L +T  E+ +     SGK++I+   +L + ++      F+  YPDI I+
Sbjct: 64  FYHECSPLLQRLTSTAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNAFMKQYPDINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  ++    +     D   R+  P + SSLI RK+  +     A+P YL     P   +E
Sbjct: 124 LKTESNADQLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPEYLIANPAPNHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+L+    LI   + +    + V+   G       Q N+   +   C  G GI L+P
Sbjct: 183 LSNHSLLKGSPLIKWTLINSKGESVVNVERGR-----FQANALNVVRSTCSEGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++K   +N +LVRI+ D       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMIKEYIENGDLVRILSDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|161619752|ref|YP_001593639.1| LysR family transcriptional regulator [Brucella canis ATCC 23365]
 gi|161336563|gb|ABX62868.1| transcriptional regulator, LysR family [Brucella canis ATCC 23365]
          Length = 308

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 144/296 (48%), Gaps = 21/296 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA QL L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARQLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRIS-----CLQVNSYLSIMQYC 235
           S ++L++H LI +       +ED      ++  +   P IS       +V+S L  ++  
Sbjct: 194 SPEDLNRHRLIGY-------VEDL----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAV 242

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 243 RAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296


>gi|241662055|ref|YP_002980415.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240864082|gb|ACS61743.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 305

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 140/289 (48%), Gaps = 27/289 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAATRLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S     +E       E    P GK+RI ++ D+G+ L+      F+  YP+I
Sbjct: 61  GQSLYQVASHALEDIERATTCAGELQDLPRGKVRITSSEDVGRLLVAPVAARFMQQYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARSLGVLRIGLFASPDYLQRRGAPDT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVL-- 237
           +Q L  H           C  DF      +   R +G   +  + V + L+      L  
Sbjct: 180 VQGLADH-----------CCLDFRGTGRGETQWRLVGPDGLKTVAVRARLNADSLIYLET 228

Query: 238 ----GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
               G+GI  LP Y   + + N   P LVR++ D  T    +    P A
Sbjct: 229 LIASGAGIGPLPLYASAVARANAPLPRLVRVLPDYATSGEPINLVTPSA 277


>gi|186473730|ref|YP_001861072.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196062|gb|ACC74026.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 307

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 142/291 (48%), Gaps = 12/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDWD LR+F   ARS S   AA  L +SQS+ISR+I  LE + G KLF R ++GL LT  
Sbjct: 4   FDWDNLRIFLGAARSQSALEAAHALKMSQSTISRRIQRLERDTGSKLFERSSQGLRLTAA 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +   L+  +  +   SV  +G++R+  T   G   L   +  F   +P I
Sbjct: 64  GHRLLEHVERLETTLQAVETSVFSDSVTLTGEIRLGATEGFGTFFLAPQVTHFCARHPGI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++   +++++S   AD ++ + +P  ++S +  KL    +  YA P YL       +
Sbjct: 124 TVDVLPLPRNVNLSKREADASVAIDRP-SANSFVTCKLTEYRLLPYATPQYLSEHPPIKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++L  H  I + D +    + F+   WL ++ +P+        +  S ++  +    G 
Sbjct: 183 TEDLIGHRWIDYVDDLIFSNQQFSLPRWLPSL-KPV-------FRSTSVIAQAEAVRAGF 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +LP ++     +LV ++ D I  + T +   P   +   ++KA  ++I
Sbjct: 235 GIGVLPCFLGSLGGDLVPVLPDQIDITRTFWLVAPPERRELARVKALWDYI 285


>gi|168465308|ref|ZP_02699190.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194443748|ref|YP_002039490.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194402411|gb|ACF62633.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195632022|gb|EDX50542.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 304

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 149/298 (50%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+ +  +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIAHFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            +++EL +H  + F +  P  +    W +A  D  + E  + C +  NS  ++ Q C+ G
Sbjct: 180 EAVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--VECGISSNSGETLKQLCLNG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|71282316|ref|YP_267580.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71148056|gb|AAZ28529.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 296

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 145/297 (48%), Gaps = 22/297 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+    V  + SFT A+++L +S++ +S+ +  +E ++GI+LF R  R L LT+ G +
Sbjct: 5   DGLKTVVAVVETNSFTAASDRLGISKALVSKYVGEVENQLGIRLFNRTTRQLALTDSGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  +       +      P G LRI+  +  G+  L   L +F+ LYPD+ ++
Sbjct: 65  YYEEAIILLEQFSAMVDNVTGEQTAPRGLLRISAPVTFGEMRLAPLLPKFIALYPDLTVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L N  ID+  +  D  +R+   +  S++I R L    +   A+P+Y +    P + ++
Sbjct: 125 LVLTNGAIDMLEEGIDVRLRIGG-VDDSNMIARHLTNFPLVLSASPNYAQTQGLPTTPEQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--------SCLQVNSYLSIMQYCVL 237
           L +H+          C+ D N+      P   P+         S L VNS  ++ +  + 
Sbjct: 184 LGEHH----------CIIDSNFRIGKQWPFISPKGRAETINVQSGLAVNSPQAVREIAIA 233

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             GIA+ P++IV+D   +  L+R+M +  T  F ++  YP       K++ F +F+ 
Sbjct: 234 DGGIAMTPNFIVEDALADGRLLRVMPEYTTLEFGLFAIYPHRKYVARKVRCFIDFVL 290


>gi|15599369|ref|NP_252863.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|218889497|ref|YP_002438361.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254242858|ref|ZP_04936180.1| hypothetical protein PA2G_03625 [Pseudomonas aeruginosa 2192]
 gi|9950383|gb|AAG07561.1|AE004834_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126196236|gb|EAZ60299.1| hypothetical protein PA2G_03625 [Pseudomonas aeruginosa 2192]
 gi|218769720|emb|CAW25480.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 307

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 144/296 (48%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R L LT  G+
Sbjct: 4   FDAMQAFARVVDTGSFTKAAETLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +L+  +  L  +++ P G+LRI     L + LL   L EF   YP+IQI
Sbjct: 64  AYYERVVRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPEIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +D+  +  DC IR  + ++  SL+ R++  + +  YAAP YL+    P   +
Sbjct: 124 DLGVSDRLVDLIDENVDCVIRGGE-LRDQSLMARRVGDLQLGVYAAPAYLQRAGVPSHPR 182

Query: 185 EL-DKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL D H  I        G  +P  M        V    G   ++    N+YL+     + 
Sbjct: 183 ELEDSHQRIVGFLWARTGKALPYAMRRGEECLRV---AGRHVLAVDDGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP Y+ ++      L+ + ED       +Y  +P     +GKL+ F  ++
Sbjct: 237 GLGILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWV 292


>gi|66044614|ref|YP_234455.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255321|gb|AAY36417.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|330968936|gb|EGH69002.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 298

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA++L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ +YP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N  +D+  +  D AIRL + +Q S L+  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIQRYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+ + N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286


>gi|168232186|ref|ZP_02657244.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194472149|ref|ZP_03078133.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194458513|gb|EDX47352.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333471|gb|EDZ20235.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 304

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 148/299 (49%), Gaps = 19/299 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQATSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            +++EL +H  + F + I       N W +A  D  + E  I C +  NS  ++ Q C+ 
Sbjct: 180 ETVEELKRHLCLGFSEPI-----SLNTWPIACSDGQLHE--IECGISSNSGETLKQLCLN 232

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 233 GNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|209548041|ref|YP_002279958.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533797|gb|ACI53732.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 305

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 145/295 (49%), Gaps = 10/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA   SF  AA+ L +S  ++SR +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEGLAMFAKVAEERSFARAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +Y + E  +   +E + +P G +R+A  +D G   L   L +F  L+P+I 
Sbjct: 66  LRLVDSAARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLPPILPDFFELFPEIS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +  +DI  D  D A+R+   +  SSL+ R+L  +     AAP YLK    P   
Sbjct: 126 IDLHMSDAVVDIVGDGFDAALRIAV-LPDSSLVARRLAPVDRFILAAPAYLKQYGLPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +EL  H+ + +     +  +D   L   +    +  P  S    NS  +++   + G GI
Sbjct: 185 RELTAHHCLGYAY---RARQDVWRLRNSEGKEEVISPSGSLRATNSQ-ALVPMALRGLGI 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             LP+++  D   +  L  I+ D   P+  +YF  P A     K++   +F+  +
Sbjct: 241 IELPEFLAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLADFMMAR 295


>gi|237730191|ref|ZP_04560672.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226905730|gb|EEH91648.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 304

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 149/298 (50%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            S++EL++H  + F +  P  +    W +A  D  + E  + C +  NS  ++ Q C+ G
Sbjct: 180 ESVEELNQHLCLGFSE--PVSLN--TWPIACSDGQLHE--VECGISSNSGETLKQLCLNG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|115360518|ref|YP_777655.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285846|gb|ABI91321.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 305

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 140/292 (47%), Gaps = 10/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE+ +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLESRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTISEQAGEIYRRAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D A+R+   +  SSL+ R+L  +     A+P YL+    P   
Sbjct: 126 IDLHLSDASVDLIAEGFDAALRI-AALPDSSLVARRLCAVTQFVVASPDYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGI 241
           +EL     +++       +    W  T D    EP +    L+V +  +++   + G  I
Sbjct: 185 RELADRPCLSYAYRARSAV----WRFTNDVGDEEPVMPTGPLRVTNADALLSTLLDGLAI 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++ 
Sbjct: 241 AELPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVTALSDYF 292


>gi|261340917|ref|ZP_05968775.1| contact-regulated protein A [Enterobacter cancerogenus ATCC 35316]
 gi|288316774|gb|EFC55712.1| contact-regulated protein A [Enterobacter cancerogenus ATCC 35316]
          Length = 301

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S+ISR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELTIFVAVVESGSFSRAAEQLGQANSAISRSVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSVLQEMAAAETEIIESRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAGN-LTDSSLRARPLFTSYRKIIASPQYIAQFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            ++++L +H  + F +  P  +    W +A  D  + E  +SC L  NS  ++ Q C+ G
Sbjct: 180 ETVEDLRQHTCLGFTE--PLSLN--TWPVACHDGQLYE--VSCGLSSNSGETLKQLCLEG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV +M D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGELVELMADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|118588657|ref|ZP_01546065.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118438643|gb|EAV45276.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 310

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 138/272 (50%), Gaps = 9/272 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F  V  SGS + AA +L +++S++SR++S LE   G +L  R      LTE G +
Sbjct: 9   EDLRLFVQVVASGSISKAAAELGIAKSAVSRRLSLLEDRYGTRLVDRSPGHWDLTETGRE 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +  S     ++  + +   +   PSG L I+   D G   L   L +F   +PDIQ+ 
Sbjct: 69  LFQRASRFVSDVDDIEDDFLSNGTAPSGPLSISIPRDFGHGFLNKELIDFQARHPDIQLT 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D++ +D++ +  D AIR+ +  +    I  KL T+    +A+P YL+    P SI +
Sbjct: 129 VDFDDRLVDLARENYDFAIRITE-TRPEDAITMKLGTVEHCLFASPDYLRGHPAPQSIDD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L KH L+ FG    + + +F       + I  +P    L  NS   ++   + G GI+ L
Sbjct: 188 LPKHRLLHFG-WARRTVWEFQTQKGKRQQIEFQP---ALNSNSGTFLLDATIQGHGISRL 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           PD+IV +      LV ++ D+  P++ +Y  +
Sbjct: 244 PDFIVTEALAAGKLVPLLPDIAVPAWGIYLLH 275


>gi|163744910|ref|ZP_02152270.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161381728|gb|EDQ06137.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 301

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 139/292 (47%), Gaps = 16/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L EFL  +PDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPALSEFLSDFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPKYFEQYGRPEKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NNHKLLHYSNQSSGNV----WKLTA--PSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKDNPNLVRIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  D      ++ED I      +  +Y  YP       K++AF +F+
Sbjct: 239 YLPSFLYADAME-KGLVEDAIPELPLETQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|302187921|ref|ZP_07264594.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA++L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ +YP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N  +D+  +  D AIRL + +Q S L+  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+ + N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286


>gi|330950655|gb|EGH50915.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA++L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ +YP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N  +D+  +  D AIRL + +Q S L+  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+ + N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286


>gi|330807804|ref|YP_004352266.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375912|gb|AEA67262.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA    FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TLTE G 
Sbjct: 6   WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIARLEERLQTRLLYRSTRRVTLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMGLYPQLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P YL+    P S+ 
Sbjct: 126 DIELSNRPLDLVHEGLDLAIRLGR-LQDSRLVATRLAPRRMYLCASPSYLERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +           D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELSRHNCLIGSS-------DVWQLEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V +   +  L+ ++E    P+  V+  YP+    + K++   +F+
Sbjct: 238 PDYYVLEHLHSGALISLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDFL 286


>gi|254487575|ref|ZP_05100780.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214044444|gb|EEB85082.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 301

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 138/291 (47%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L  FL  +PDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPALSGFLEEFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPGYFEKYGRPEKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     M    W  T   P GE R       L VN   S++   V G GIA
Sbjct: 185 NDHKLLHYSNQSSGNM----WKLT--SPSGEKRQVRTAGWLSVNDGQSLLNAAVSGLGIA 238

Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  D     LV   + D+   +  +Y  YP       K++AF +F+
Sbjct: 239 YLPSFLYADAMEKGLVEDAIPDLPLETQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|270261398|ref|ZP_06189671.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044882|gb|EFA17973.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 306

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 140/271 (51%), Gaps = 9/271 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V  +G+F+ AAE+LHL++S++ + I+ LE  +G+ LF+R+ARGL+LT +G   +  
Sbjct: 10  TFVRVVEAGNFSLAAERLHLTRSAVGKSIARLEQRLGVLLFHRNARGLSLTHEGQAYYDR 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 +L+    EL     +P G LR++    LG++ +   L   +  YP++Q+ +  +
Sbjct: 70  CLRALSELDAADAELDNGRREPQGTLRVSAPKLLGRHCITPVLMALVGRYPNLQVDIAFN 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D++ +  D AIR+     S+++I R+L   H+   AAP YL     P S+  LD H
Sbjct: 130 DRVADLAEEGFDLAIRIGPLNDSANIIARRLGGQHLALCAAPAYLAAHGNPQSVAALDGH 189

Query: 190 NLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           + I +     +  ED  W     D    +  I   L+++   S+    V G+G+  LP++
Sbjct: 190 SGIAY----HRFGEDVGWRQLQADAAASKLNIDIRLRLDDLHSLADAAVAGAGLVWLPNW 245

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           ++        LV +++D+      ++  +P+
Sbjct: 246 LLARYLRCGELVPVLDDIHLLPSDIHAVWPQ 276


>gi|238761917|ref|ZP_04622891.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238700031|gb|EEP92774.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
          Length = 302

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 139/291 (47%), Gaps = 18/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA  GSFT AAE + L +SS+S++IS LE  +GI+L  R  R L LT  G +  
Sbjct: 8   MALFARVAECGSFTRAAEMVGLPKSSVSQRISQLEQSLGIRLLNRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ ++++
Sbjct: 68  VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLAQLATDFQRQYPDVLLEVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  +  D A+R  KP Q SSLI R+L     +  A+P YL      +  ++LD
Sbjct: 128 VSDTMVDLVEEGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLVHPRQLD 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIAL 243
            H          +C+    W A + R   E    ++  L V   L   + C L G GI L
Sbjct: 187 TH----------RCIAHRAWQALILRREDEFYRWQVPALHVTDNLLYARECALSGGGITL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LP ++ ++   +  L+ ++         +Y  YP    N+  L  F + + 
Sbjct: 237 LPAFLSREVVASRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVVI 287


>gi|320157223|ref|YP_004189602.1| transcriptional regulator LysR family in formaldehyde
           detoxification operon [Vibrio vulnificus MO6-24/O]
 gi|319932535|gb|ADV87399.1| transcriptional regulator LysR family in formaldehyde
           detoxification operon [Vibrio vulnificus MO6-24/O]
          Length = 294

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 10/260 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+ +  F  VA SGSFT AA +L  S +++SR++  LE  +G+KL  R  R ++LTE
Sbjct: 3   NIHWEGVNEFVAVAESGSFTQAATRLETSVANVSRRVGQLEERLGVKLLLRSTRKVSLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +    +   L   ++ + +    P GKLRI   +  G+  +   L +FL+ YP 
Sbjct: 63  AGQIYVQHCRSILEGLHQAELAVTQMQQTPQGKLRITAPVTYGEQKIASLLNDFLIRYPK 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L N+ +D+     D A+RL + ++ SS + R+L   H+H  A P Y +    P 
Sbjct: 123 IDLELVLTNQKLDLIEQGVDIAVRLGQ-LEDSSSMARRLSDRHLHVCATPEYFEQHGMPH 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSG 240
           ++ +L  HN +       +  E+        R I    RI C   +S + ++   + G G
Sbjct: 182 TLSDLSSHNCLIGTHDHWRFKENHQ-----GRSIKVNGRIRC---SSGVVLLDAALKGIG 233

Query: 241 IALLPDYIVKDNPNLVRIME 260
           +  LPDY V ++    R++E
Sbjct: 234 LVQLPDYYVDEHLRAGRLIE 253


>gi|319793119|ref|YP_004154759.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595582|gb|ADU36648.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 323

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 140/279 (50%), Gaps = 22/279 (7%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D LR       S   GS + AA  L  +Q +IS+ ++GLE  +G++L  R A GL+LTE+
Sbjct: 2   DTLRALSAFVHSVELGSLSGAARALDTTQPTISKLVAGLERSLGVRLMRRGATGLSLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + H     V         + +E   +P G LR++  + +GQ  L     EFL LYPDI
Sbjct: 62  GQRFHERARRVLEDYGDAVADAREQVQQPQGLLRVSAPVTMGQRHLNAMAMEFLRLYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-----AAPHYLKNC 177
           +++L+LD++ +D   +  D ++R+         +   LV  H+ ++     A+P Y+   
Sbjct: 122 ELELVLDDRFVDPREERIDVSLRV------GGALPPDLVAKHLGSWPRVLVASPDYIAAR 175

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +P + ++L  H+ I +        +D   L   +  +  P  S L+VN+ ++++   + 
Sbjct: 176 GKPRNPKDLLSHDYIRYA-----AGDDGVLLQGPEGAVTVPVRSRLRVNNAVAMLDSVLG 230

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           G+GI+L P ++V     + +LVR++     P+  V+  Y
Sbjct: 231 GAGISLQPTWMVASHLADGSLVRVLARHTGPAQEVHLLY 269


>gi|330721477|gb|EGG99525.1| Transcriptional regulator2C LysR family [gamma proteobacterium
           IMCC2047]
          Length = 297

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 143/289 (49%), Gaps = 9/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD    F  V   GSF+ AA+ L++S+S +SR ++ LE  +G +L  R  R +TLTE G 
Sbjct: 4   WDGFEAFVHVVDQGSFSKAAQHLNVSKSFVSRHVTDLENRLGAQLLNRTTRTITLTEVGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E+ + LE  +  + +   +P G L++      G+  +     +F+ L P++ I
Sbjct: 64  SFYTRCREILNGLEEAEHAVFDMQERPRGTLKMTAAGAFGETYVVPIAVDFMKLNPEVNI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   N++ID+  +  D AIR    ++ SSLI R++ T  +H   +P Y +    P SI 
Sbjct: 124 DISFTNRNIDLVAEGYDLAIRF-GVLKDSSLIARRIATRQLHVVGSPDYFQQFGLPQSID 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN +     I +  E  N   T  +  G  R      N+  ++++    G G++ +
Sbjct: 183 QLKQHNCLAGALNIWRFSETGNQGHTEVKIEGNWR-----SNNARALLEAARKGLGLSQM 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V+D+     L+ ++++       V+  YP +   + K+++F +F+
Sbjct: 238 PAAYVQDDIESGALISVLDEYQPRDLGVWAVYPSSRHLSTKVRSFIDFL 286


>gi|238025413|ref|YP_002909645.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237880078|gb|ACR32410.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 305

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 140/290 (48%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA ++ +S +++SR ++ LE  +G +LF R +R L LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAAREMGVSVATVSRGVARLEDRLGARLFNRTSRQLALTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L     E+Y + E  +   +E SV+P G +R+A  +  G   +   +  F  LYP + 
Sbjct: 66  RALCEKAGEIYRQAEAVEGAARELSVQPRGLVRLAVPMSFGLRWVAPLMPGFFRLYPQVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+  +  D A+R+   +  SSL+ R+L  +  +  A+P YL     P   
Sbjct: 126 VDLHLADATVDLVAEGFDAALRI-AALPDSSLVARRLCAVTQYLVASPGYLAREGRPSHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+    +++       +  F   A  + P+       L+V +  +++   + G  IA 
Sbjct: 185 RELNGRACLSYAYRAHSDVWRFTNQAGDEEPVMP--AGPLRVTNSDALLPMLLEGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++ 
Sbjct: 243 LPEFIASEYLADGRLEAILTDWSLTRGGLYFVTPSARARPAKVSALSDYF 292


>gi|54303238|ref|YP_133231.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46916666|emb|CAG23431.1| Putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 293

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 147/292 (50%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  V  + SFT A+++L +S + +SRQIS LE  +  KLFYR  R +++T+ 
Sbjct: 6   FNWEGVSEFVAVTETESFTAASKRLGISTAQVSRQISALEKRLSAKLFYRTTRKVSVTDV 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L+  +  +      P GKL+I   I  G+  +   + +F L YPD+
Sbjct: 66  GRVYYQHCRQVLDGLDEAERAISNLQSSPQGKLKITAPITYGEGTVAPLINDFTLQYPDL 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  A+  YL     P S
Sbjct: 126 EVNLQLSNQKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLGSRTQYVCASEKYLSTHGVPYS 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + EL+ HN +  G L      D+ W    +      RI   L+ NS  ++    + G GI
Sbjct: 185 LSELNHHNCLQ-GTL------DY-WRFQENGKHRNIRIKGNLRCNSGHALTDAALKGLGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V+   DN  L+ ++         ++  YP     + K++   +F+
Sbjct: 237 VQLPDYYVQEYIDNQQLIPLLTQFTESDDGIWALYPHNRHLSPKVRMLVDFL 288


>gi|260568904|ref|ZP_05839372.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260154288|gb|EEW89370.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
          Length = 293

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA QL L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARQLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179

Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            ++L++H LI +  DL+        P+   D+                  +V+S L  ++
Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 226 AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281


>gi|153000928|ref|YP_001366609.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151365546|gb|ABS08546.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 292

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 150/296 (50%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           EL +HN +         + + N+   V+   G  R       L  NS  ++    + G G
Sbjct: 183 ELSQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LPDY ++++     L+ +++        ++  YP+    + K++   +++  K
Sbjct: 232 IVQLPDYYIEEDIQAGRLLSLLDGHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287


>gi|83746103|ref|ZP_00943158.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207742398|ref|YP_002258790.1| hypothetical protein RSIPO_00585 [Ralstonia solanacearum IPO1609]
 gi|83727286|gb|EAP74409.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206593788|emb|CAQ60715.1| hypothetical protein RSIPO_00585 [Ralstonia solanacearum IPO1609]
          Length = 305

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 21/286 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAAARLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S     +E       E    P GK+R+    D+G+ L+   +  F+  YPDI
Sbjct: 61  GQSLYQVASHALEDIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMREYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQRQGVPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
           +++L  H+ + F         +  W     R +G   +  + V + L+      L     
Sbjct: 180 VRDLGHHSCLDFRG---TGRGETQW-----RLVGPDGLKTVAVRARLNADSLSYLETLIA 231

Query: 238 -GSGIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
            G+GI  LP Y   + + N   P LVR++ D  T    +    P A
Sbjct: 232 SGAGIGPLPLYAGGVARANAPLPRLVRVLPDYATSGEPLNLVTPTA 277


>gi|254560209|ref|YP_003067304.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254267487|emb|CAX23328.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           DM4]
          Length = 298

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ L  F  +AR G    AA +L +  +++SR+I+ LE  +  KLF R + G  LTE 
Sbjct: 2   FDWNDLTFFLELARHGRLMPAARRLKVDNTTVSRRIAELERGLDTKLFQRCSDGFLLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G KL  +   +  K+ +   EL  S   +P+G++R+A+   +    L     EF    P 
Sbjct: 62  GHKLFVIAEAIEQKMLSVPDELGLSDGAEPAGRVRVASMEGIAAFYLSAKFAEFAAAMPG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+ +   I+++   AD ++    P Q   L  R++    +  + A  Y      P 
Sbjct: 122 IVVELVTERHLINLTKREADISVSFVPP-QGPRLKVRRVGEFRLALFGAERYFATHGRPT 180

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +L  H+ + +  DL+   +E  +WL  V +P         +  S  +       G+G
Sbjct: 181 TRADLQDHDFVDYVDDLV--AIEPVHWLLEVLKPTN----VVFRSTSMAAQQTAVAAGAG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + LLP +  K NP L+ ++ D +     +Y    E +++ G+++A   F+
Sbjct: 235 LGLLPLFSAKTNPALIPVLADDVVVQRELYLGVHEDIEHAGRIRAVTRFL 284


>gi|269966021|ref|ZP_06180113.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|269829417|gb|EEZ83659.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 291

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S +  +L T   E+ +     SGK++I+   +L + ++      F+  YPDI I+
Sbjct: 64  FYHECSPLLQRLTTAAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNSFMKQYPDINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N    +     D   R+  P + SSLI RK+  +     A+P YL +   P   +E
Sbjct: 124 LTTENNADKLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPDYLTSNPAPHHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+L+    LI   + +    + V+   G       Q N+   +   C  G GI L+P
Sbjct: 183 LSNHSLLKGYPLIKWTLINSKGESVVNVDRGR-----FQANALNVVRSACSEGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++K   ++ +LVR++ D       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMIKEYIESGDLVRVLPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|323497147|ref|ZP_08102167.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323317722|gb|EGA70713.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 300

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 146/300 (48%), Gaps = 10/300 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AA+Q+ L++S +S++I+ LE E+G++L YR  R L LTE G  
Sbjct: 5   DDYIIFYHLVEQGSFSAAAKQMELTKSVVSKRIAKLEKEIGVQLLYRTTRTLKLTEAGQS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V+  + T +  +       SG ++I      G+ +L   + EF L YPDI I 
Sbjct: 65  FFEHARRVFQAVATAEESIVGLGKSLSGNIKITVPTISGELILPTVISEFNLQYPDINID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+  DI  +  D AIR    +  SSLI RKLV  +    A+P YL    +P S + 
Sbjct: 125 MELDNRFADIINEGFDLAIR-TGVLPDSSLIARKLVDANWVVCASPMYLAKHGKPASPKA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   W    +  I + ++   L  N+  ++    +LG G+  +
Sbjct: 184 LVDHNCLAYAYQETGARE---WAFKSESGIYQVQVDGNLCTNNSSALRNVALLGQGLIYV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWKF 299
           P  +V ++     L+++ +D       +Y  YP   +   K+K F + ++   ++R  +F
Sbjct: 241 PRVLVYEDLQQGKLIQLFKDETAKCLGIYTVYPYTRQQPEKVKLFIDHLYTCFQSRSHQF 300


>gi|146293271|ref|YP_001183695.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145564961|gb|ABP75896.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 292

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 150/296 (50%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSTLENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L     +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSNRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           EL++HN +         + + N+   V+   G  R       L  NS  ++    + G G
Sbjct: 183 ELNQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231

Query: 241 IALLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LPDY ++++    R++  + T       ++  YP+    + K++   +++  K
Sbjct: 232 IVQLPDYYIEEDIQAGRLLSFLDTHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287


>gi|83950856|ref|ZP_00959589.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
 gi|83838755|gb|EAP78051.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
          Length = 301

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 140/291 (48%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L  FL  +PDI + +
Sbjct: 66  YDRALRVLNDAGEADALVSSMQSDPSGLLRISVATDFGVNHLSPVLGSFLDEFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+ + ++ S+L  RKL        A+P YL+    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETTKRMIASPAYLEKYGRPTKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ +       +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NEHKLLHYSSQAGGSV----WKLTA--PSGEKRQVRTAGGLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  +  +  LV  ++ D+   +  +Y  YP       K++AF +F+
Sbjct: 239 YLPSFLYSEALSKGLVEDVIPDLPMETQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|317405414|gb|EFV85727.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 302

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 143/292 (48%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R F  +   GS   AAE L +S + +S+Q+  LE  +G  L  R  R ++LT+ G+
Sbjct: 4   FNYMRAFRRIVELGSLAKAAEDLDMSSAGLSKQLRALEAHLGAVLIQRTTRKMSLTDTGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +  ++  S + SG+LR+   +    ++L   L  FL  YP++++
Sbjct: 64  AYYAECCRLLDALDALEKSVKRQSGRVSGRLRVNAPVSFALSVLSPLLARFLRQYPELRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L ++++ +D      D +IRLR  +  SSLI R+L ++     AAP YL+    P S++
Sbjct: 124 DLAMEDRLVDAVGQGFDVSIRLRAQLDDSSLIARRLASLTQVLCAAPSYLERRGLPDSVE 183

Query: 185 ELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            L  H+++++       P   ED    A    P+  P  + +QVN+ L +      G GI
Sbjct: 184 ALRGHDILSYSLADSPGPVPEEDAGQPAD---PLAGP--ALIQVNNSLMLRDLLEAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++         L R++ ++      VY  YP +     K+KAF +F+
Sbjct: 239 GALPSFLAGPALAAGRLARVLPELPGSPRQVYAVYPTSRHLQPKVKAFVDFL 290


>gi|227114283|ref|ZP_03827939.1| LysR family transcriptional activator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 302

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 139/291 (47%), Gaps = 18/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA +  L++SS+S +IS LE ++G++L  R  R L LT  G +  
Sbjct: 8   MALFALVAECGSFTQAARKAGLAKSSLSLRISQLEQQIGLRLLNRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + +Q     PSG+LRI +   LG  LL     EF   +P + + ++
Sbjct: 68  IHCQEMLQASERADLAIQRLRDNPSGRLRITSPAGLGSTLLARLTAEFQQHFPAVSLDVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  ID+  +  D A R  KP   SSLI R L     +  A+P YL      L  Q+L 
Sbjct: 128 ISDDVIDLVQEGFDVAFRTGKP-HDSSLIGRSLGQTPRYLLASPDYLARHLALLHPQQLQ 186

Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I        L+ +  E + WL      + +  I+    ++ L   +  + G+GI L
Sbjct: 187 QHRCIAHHAWTEWLLHRGSELYRWL------LPDSHIT----DNLLYARECAIAGAGITL 236

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LPD++  D      LVR++ D    +  +Y  YP    N+  L  F +F+ 
Sbjct: 237 LPDFLCLDEAVSGKLVRVLPDWQVEANELYLVYPSRKLNSPALACFIDFVL 287


>gi|254427486|ref|ZP_05041193.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
 gi|196193655|gb|EDX88614.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
          Length = 303

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 143/291 (49%), Gaps = 13/291 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  + ++G  T AA  L +S ++IS+++  LE E+G++L  R+AR + +T++G  L   
Sbjct: 11  VFVQLVKAGKMTDAARVLGMSPATISQRLRHLEQELGVRLVNRNARAMKVTDEGRALFER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   LE T   + + +  P G LR+ +T+ LG+N +   +KEF+  +P++ +QL L 
Sbjct: 71  LDGLMGDLEDTAEAVVQLAKGPHGTLRVWSTMGLGRNRIAVLVKEFIARFPEVPVQLFLG 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D   +  D AI + +P + SSL+ RKL+    H  A+P YL       + ++L  H
Sbjct: 131 DRPYDFVSEGLDVAIAIGQP-EDSSLVARKLMDNRCHLIASPQYLATHPALKTPEDLRDH 189

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIALLP 245
                  LI  C   F     +    G+         L  +    ++Q+ V G GIAL  
Sbjct: 190 EC-----LILDCHASFKDFWPLYDDQGDRHAVKVHGRLHTDHSEVLLQWAVDGMGIALKS 244

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + ++   D+  LV ++ +   P    Y  YPE      K + F +F+F K
Sbjct: 245 AWDIQPYLDDGRLVEVLPNYRPPDLDFYLVYPERKCLPAKTRVFMDFLFEK 295


>gi|34498161|ref|NP_902376.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34104016|gb|AAQ60376.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 302

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 135/290 (46%), Gaps = 21/290 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   G FT AA+QL L ++++S  +  LE ++G +L +R  R + LT  G   +
Sbjct: 7   MRVFVAVVDCGGFTRAAQQLQLPRATVSSAVQQLEAQLGARLLHRTTRRVQLTLDGGTFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +  +    +    P GKLRI     +G+ +L   L EF  LYP I+++L 
Sbjct: 67  ERCQQLLADFDELESLFSQQGASPRGKLRIDVPGPIGRQVLAPALPEFFRLYPGIELELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR+   +  S L+ R++  +    YA+P YL     P S   L 
Sbjct: 127 VTDRPVDLIQEGVDCVIRV-GALAESRLVARRIGMLPQGNYASPDYLAAFGAPASPDALA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-------ISCLQVNSYLSIMQYCVL-GS 239
            H  + +    P   + F W    D   GE R       +S  QV SY++    C L G 
Sbjct: 186 GHRAVNYAS--PSTGKVFAWEYLQD---GERRELALQSLVSVNQVESYIA----CALAGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+  LP Y  + +     LV ++ D   P+  V   YP     + +++ F
Sbjct: 237 GMIQLPRYDAEPHVAAGALVEVLADWPPPAMPVSVLYPHRRHLSRRVQVF 286


>gi|83644057|ref|YP_432492.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632100|gb|ABC28067.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 330

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 140/297 (47%), Gaps = 9/297 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA + SF  AA ++ LS+S ++R++  LE E+G+ L  R  R ++LT  G   +
Sbjct: 33  LTAFVNVAEAESFAKAAREMGLSRSQVNRRVIALEDELGVTLLARTTRHVSLTPTGQAFY 92

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + + L   +  +Q    +P G L+I   +  G   L   L +F+  YP+I++ L+
Sbjct: 93  LRAKSILNDLREAETAIQSDHAEPQGDLKINAPMSFGTMHLSSALADFMTRYPNIRVHLV 152

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D   +  D  +R+ +  ++ SLI+  +V       A+P YL+    P +I+EL 
Sbjct: 153 LDDRFVDPVSEGFDITVRVAETREAPSLIEHTIVEAKRLLCASPGYLQQHGRPRTIKELA 212

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
               + +G+L       + W L   D P    R++  L  N+  ++    V G G+ALLP
Sbjct: 213 SRPCLHYGNL----ASGYTWRLRRGDAPETSVRVNGVLCCNNAEALRDAAVAGLGVALLP 268

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +I         LV ++ +   P   +   YP       +++ F  F+  +  D  +
Sbjct: 269 TFIAGPELQTGRLVSVLPEYQAPPVYLSLLYPPNRHLAARVRVFVKFMQARFGDQPY 325


>gi|156935501|ref|YP_001439417.1| hypothetical protein ESA_03360 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533755|gb|ABU78581.1| hypothetical protein ESA_03360 [Cronobacter sakazakii ATCC BAA-894]
          Length = 305

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 142/286 (49%), Gaps = 12/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA +GSFT AA++  L +SS+S++IS LE  VG++L  R  R L+LT  G    
Sbjct: 8   MALFALVAETGSFTAAAQKAGLPKSSVSQRISQLEAHVGLRLLNRTTRKLSLTFAGEHYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + +Q     PSG+LRI +   +G  LL     EFL  YPDI +++ 
Sbjct: 68  VHCREMLDASERADLAIQRLRDNPSGRLRITSPAGIGATLLARMNAEFLAKYPDITLEVF 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+ M+  D A+R  KP Q SSLI RK+     +  A+P YL          +L 
Sbjct: 128 ISDDVRDLVMEGFDVALRTGKP-QDSSLIGRKIGHCPRYLLASPAYLARHPALTHPSQLV 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
            H +I     + +   +  WL   DR +    ++ + Q ++ L   +  + G+GI LLP 
Sbjct: 187 DHRVI-----VHRAWSE--WLLQRDRELYRCHLNQMHQTDNLLYARESALAGAGITLLPA 239

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +++ D+     LV ++ +       +Y  YP    N   L ++ NF
Sbjct: 240 FLLDDSLAEGALVNVLPEWTVTGNDLYLVYPGRKLNAPALVSYINF 285


>gi|146292916|ref|YP_001183340.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145564606|gb|ABP75541.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 297

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 149/290 (51%), Gaps = 13/290 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA   SF  A  +L +S S++ + +  LE ++G++LF R  R +TLT +G      
Sbjct: 6   VFVQVAEQRSFVGAGRELGVSASAVGKSVVRLEEKLGVRLFNRSTRSVTLTAEGLLFLER 65

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  Q+EL +++  P G+LR+  ++ L  +L+   L EF+  YPDI++ L   
Sbjct: 66  SRRILAEIEAAQLELSQATGAPRGRLRV--SLPLVSSLVLPVLGEFMREYPDIELDLDFT 123

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P Q S L  R+L    M   A+P YL     P +  +L +H
Sbjct: 124 DRMVDVIEEGFDAVVRTGEP-QDSRLSARRLGNFQMRLVASPDYLALRGTPQTPADLLQH 182

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALLPD 246
           + + +    P   +   W   + +P+ EP++   + +  N+  + + + + G GIA LPD
Sbjct: 183 SCLHY--RFPNSGKLETW--ALKQPLDEPKLQLPTSMICNNIETRLCFALQGLGIAYLPD 238

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + + +   N  L  I+ D +  + T Y  +P +     K++A  +F+  K
Sbjct: 239 FAIHEPLANGRLRPILADYVQRTGTFYILWPASKHPLPKVRALVDFLCAK 288


>gi|330896083|gb|EGH28304.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 298

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA +L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAVRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+ + N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWGLYPQQRHLSPKVRKLVDYL 286


>gi|261245481|emb|CBG23271.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 304

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGEQYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            +++EL +H  + F +  P  +    W +A  D  + E  I C +  NS  ++ Q C+ G
Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IKCGISSNSGETLKQLCLNG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|90407747|ref|ZP_01215925.1| Putative transcriptional regulator, LysR family protein
           [Psychromonas sp. CNPT3]
 gi|90311107|gb|EAS39214.1| Putative transcriptional regulator, LysR family protein
           [Psychromonas sp. CNPT3]
          Length = 288

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 138/276 (50%), Gaps = 11/276 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W  +  F  VA + SFT A++ LH+S + +SRQ+S LE  + IKLFYR  R ++LT++
Sbjct: 1   MSWQGINEFVAVAATQSFTMASKNLHISTAQVSRQVSALEKRLNIKLFYRSTRKVSLTQE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    V   L+  +  L     + SG ++++  I  G+  +Q  L +F+ L+P I
Sbjct: 61  GQLFYKDCKNVLEGLKAAEDALSNLQQQASGSIKLSAPITFGEQKIQPLLNDFIKLHPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I   L N+ ID+     D AIRL   ++ S+L+ +KL     +  A+P Y++    P S
Sbjct: 121 EIISELSNQRIDLLAGGFDLAIRL-GSLEDSNLLAKKLALRSTYVCASPAYIEKFGVPHS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG-I 241
             EL  HN +    L  + M  FN          +  I C   NS + ++   + G G I
Sbjct: 180 TSELRTHNCL----LGTRDMWHFNEQGKEKNIRVKGNIRC---NSGIGLVDAALKGIGLI 232

Query: 242 ALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPE 275
            L  DY+ +   +  L+R+++ V      ++  YPE
Sbjct: 233 QLANDYVDEYIKSGQLIRVLDSVRPNDEAIWAIYPE 268


>gi|187926406|ref|YP_001892751.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241665893|ref|YP_002984252.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728160|gb|ACD29324.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240867920|gb|ACS65580.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 314

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 146/286 (51%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T  G+  +
Sbjct: 7   MQVFTRVVEASSFTKAADSLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE T+    +SS    G LRI     +G+ LL   +++F   YPD+Q+++ 
Sbjct: 67  ERCVRLLGDLEETEAAFSQSSSGARGTLRIDVPASIGKRLLVPRIRDFHEAYPDLQLEIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DCA+R    +Q SSL+ R++  + M   A+P YL  C  P ++++L 
Sbjct: 127 MSDRTVDLVQEGVDCAVR-GGELQDSSLVARRIGQLSMVNCASPEYLARCGTPKTLEDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + +         D++++    + I + R S + VN   S +   + G G+     +
Sbjct: 186 DHTAVNYFSARNGRRMDWDFVIDGQKQIHKVR-SMVSVNDAESAVACGLHGLGLLQTSRF 244

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V +   +  LV ++ D I+ +  V   YP     + K++ F +++
Sbjct: 245 LVYEHLMSGALVEVLPDHISEAVPVSVVYPHNRHLSPKVRVFVDWV 290


>gi|146281692|ref|YP_001171845.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|25136593|emb|CAD44482.1| LysR protein [Pseudomonas stutzeri]
 gi|145569897|gb|ABP79003.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501]
          Length = 307

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAETLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  +S  P G+LR+     L + +L   L  F   YPDIQ+
Sbjct: 64  AYYERVVRLLADMDDAETSLSGASTLPRGRLRVDVPSPLARMILVPALPAFHARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R    I   SL+ R++  + +  YAAP YL+    P   +
Sbjct: 124 DMGVSDRRVDLIDENVDCVVR-GGDITDQSLVARRVGDLRLGVYAAPGYLERAGTPRHPR 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ F     G + P  M        V   +G+  ++    N+YL+     + 
Sbjct: 183 ELENTHHRIVGFLWARAGKVFPYAMHGNGERVEV---LGQYVLAVDDGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LPDY+ K++     LV + E        +Y  +P     + KL+ F +++
Sbjct: 237 GLGILWLPDYMAKEHLARGELVLLFEHWQLEPMPLYVAFPPNRHVSAKLRVFIDWV 292


>gi|168238655|ref|ZP_02663713.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737606|ref|YP_002113273.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194713108|gb|ACF92329.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288591|gb|EDY27968.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 304

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            +++EL +H  + F +  P  +    W +A  D  + E  + C +  NS  ++ Q C+ G
Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--VECGISSNSGETLKQLCLNG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|163850588|ref|YP_001638631.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|163662193|gb|ABY29560.1| LysR substrate-binding [Methylobacterium extorquens PA1]
          Length = 317

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ L  F  +AR G    AA +L +  +++SR+I+ LE  +  KLF R + G  LTE 
Sbjct: 21  FDWNDLTFFLELARHGRLMPAARRLKVDNTTVSRRIAELERGLDTKLFQRCSDGFLLTEA 80

Query: 63  GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G KL  +   +  K+ +   EL  S   +P+G++R+A+   +    L     EF    P 
Sbjct: 81  GHKLFVIAEAIEQKMLSVPDELGLSDGAEPAGRVRVASMEGIAAFYLSAKFAEFATAMPG 140

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+ +   I+++   AD ++    P Q   L  R++    +  + A  Y      P 
Sbjct: 141 IVVELVTERHLINLTKREADISVSFVPP-QGPRLKVRRVGEFRLALFGAERYFATHGRPT 199

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +L  H+ + +  DL+   +E  +WL  V +P         +  S  +       G+G
Sbjct: 200 TRPDLQDHDFVDYVDDLV--AIEPVHWLLEVLKPTN----VVFRSTSMAAQQTAVAAGAG 253

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + LLP +  K NP L+ ++ D +     +Y    E +++ G+++A   F+
Sbjct: 254 LGLLPLFSAKTNPALIPVLADDVVVQRELYLGVHEDIEHAGRIRAVTRFL 303


>gi|153008401|ref|YP_001369616.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560289|gb|ABS13787.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 293

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA++L L+ ++++R+++ LET +   L  R   G TLT+ 
Sbjct: 1   MNWDDIRIFLAVARSGQILGAAKRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTQA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + +  +  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARSHVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   LI R+LV   +  YA   YL+    P +
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPEQ-GRLIARRLVDYTLGLYAHRSYLEANGTPEN 179

Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
             +L +H LI +  DL+        P+   D+                  +V+S L  ++
Sbjct: 180 TDDLARHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSALGQVE 225

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+GI +L  +I + +P+LV I+ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 226 AVRAGAGIGILHAFIARADPDLVPILPDRVIRRAY--WLAYHESARTLRRVTAISALI 281


>gi|325121775|gb|ADY81298.1| putative LysR family transcriptional regulator [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 301

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 146/280 (52%), Gaps = 11/280 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEDQLGVALFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGALFYEHSGRALSEIQNAAALLDQGKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++ +D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRTVDLVEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNEAGSL 180

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +I++LD+H  I    FG +    ++  N      +P  +     L +N   +I    + 
Sbjct: 181 ENIEDLDQHATIADPHFGQMQKWRLQKENSEPFFIKPKAK-----LLLNDLQAIKNAALA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           G+GIA LPD+++++      LV+++E + + +F ++  +P
Sbjct: 236 GAGIAWLPDWLIQNELQEGKLVQVLETMSSIAFPIHLVWP 275


>gi|307129404|ref|YP_003881420.1| transcriptional regulator [Dickeya dadantii 3937]
 gi|306526933|gb|ADM96863.1| Transcriptional regulator [Dickeya dadantii 3937]
          Length = 305

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 14/304 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S  ++SR ++ LE  +G +LF R +R L LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARVMGVSVPTVSRAVARLEERLGGRLFNRTSRQLALTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    SE+Y + E  + E  E SV+P G++R+A  +  G   +   L E +  +P++ 
Sbjct: 66  QSMAAKASEMYRQAEEVESEAHELSVQPRGQVRLAVPMSFGLRWVVPLLPELIRQFPELS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+  +  D A+R+   +  SSL+ R+L  +  +  AAP YL     P   
Sbjct: 126 VDLHLSDASVDLIAEGFDAALRI-AALPDSSLVARRLCAVTQYLVAAPAYLAEHSAPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +EL      ++       +  F   +       P G      L+V +  +++   + G G
Sbjct: 185 RELSGRQCFSYAYRARSQVWRFTHHSGAQEDIVPNGP-----LRVTNSDALLPSLLAGQG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           IA LP++I  +     +LV ++++       +YF  P +     K+K   +F   +L   
Sbjct: 240 IAELPEFIAAEYLKAGSLVHLLDEWSMTQGGLYFVTPTSRSRPLKVKVLSDFFAKYLSEP 299

Query: 296 DWKF 299
           +W++
Sbjct: 300 EWRW 303


>gi|86356244|ref|YP_468136.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280346|gb|ABC89409.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 297

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 152/300 (50%), Gaps = 21/300 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V+   SFT AAE+L ++++++  Q+  LE  +GI+LF R  R + LTE G+ 
Sbjct: 8   DGIAAFLTVSTHLSFTKAAEELSMARATVGAQVRQLEDRLGIRLFQRSTRKVALTEAGAA 67

Query: 66  LHRVTSEVYHKL---ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             +  S +  ++   E   I  Q+ +V   G+LR++   DLG  ++   + EFL L P +
Sbjct: 68  YRQALSGILPQIREAERAAISFQKEAV---GRLRVSAPPDLGHLVIVPAVSEFLKLNPAV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L ++ +++  D  D AIR R  +   +LI R+L T  +   A+P Y+     P++
Sbjct: 125 SVELDLSHRPVNLVEDGFDLAIRGRLEVD-INLITRQLATSSIVISASPAYIAEHGVPMT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLG 238
             +L  H  + F +L    +    W  + D   GE    P +  L++N  L +    VLG
Sbjct: 184 PHDLVHHACLHFAELRWGRI----WPFSRD---GEEFRIPIVPRLELNHSLGLRDAAVLG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI LLPD++V ++     LVR++ D    +  +   YP       K++ F +F+  K R
Sbjct: 237 LGIVLLPDFVVGEDLRQGRLVRLLPDWDISTIQLQAVYPANRHIAVKVRRFVSFLAGKLR 296


>gi|90410168|ref|ZP_01218185.1| Putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90329521|gb|EAS45778.1| Putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 289

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 147/292 (50%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  V  + SFT A+++L +S + +SRQIS LE  +  KLFYR  R +++T+ 
Sbjct: 2   FNWEGVSEFVAVTETESFTAASKRLGISTAQVSRQISALEKRLSAKLFYRTTRKVSVTDV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L+  +  +      P GKL+I   I  G+  L   + +F L YP++
Sbjct: 62  GRVYYQHCRQVLDGLDEAERAISNLQSSPQGKLKITAPITYGEGTLAPLINDFTLQYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  A+  YL     P S
Sbjct: 122 EVNLQLSNQKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLGSRTQYVCASEKYLSTHGVPYS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + EL+ HN +  G L      D+ W    +      RI   L+ NS  ++    + G GI
Sbjct: 181 LSELNHHNCLQ-GTL------DY-WRFQENGKHRNIRIKGNLRCNSGHALTDAALKGLGI 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V+   DN  L+ ++         ++  YP     + K++   +F+
Sbjct: 233 VQLPDYYVQEYIDNQQLIPLLTQFTESDDGIWALYPHNRHLSPKVRMLVDFL 284


>gi|77458595|ref|YP_348100.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382598|gb|ABA74111.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 313

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 146/296 (49%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++++++ I  LE  + +KL  R  R +  T  G+
Sbjct: 4   FDAMQAFARVVEAGSFTKAAETLHMSKTTVTQLIQQLEARLRVKLLNRTTRKVNATADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   ++  +  L  ++ +P G+LR+     L   +L   L EF   YP+IQI
Sbjct: 64  VYYERVIKLLADMDDAETSLPGAAAQPKGRLRVDVPSPLANLILVPALPEFCARYPEIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +DI  +  DC +R  + ++  SL+ RK+  + +  YAAP YL     P   +
Sbjct: 124 DMGVSDRIVDIIDENVDCVVRGGE-LRDQSLMARKVADLQLGVYAAPSYLARAGTPAHPR 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ F     G  +P  + + +    +    G   ++    N+YLS     + 
Sbjct: 183 ELEDSHHRVVGFLWARTGKPVPYALHNEHEDLQIK---GRHVLAVDDGNAYLSA---GLA 236

Query: 238 GSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  LP Y+ K +    NLV + ED       +Y  YP     + KL+ F ++I
Sbjct: 237 GLGVLWLPKYMSKAHEASGNLVPLFEDWRLDPMPLYVAYPPNRHISRKLRVFIDWI 292


>gi|27363815|ref|NP_759343.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27359932|gb|AAO08870.1| Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 294

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 132/260 (50%), Gaps = 10/260 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+ +  F  VA SGSFT AA +L  S +++SR++  LE  +G+KL  R  R ++LTE
Sbjct: 3   NIHWEGVNEFVAVAESGSFTQAATRLETSVANVSRRVGQLEERLGVKLLLRSTRKVSLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +    +   L   ++ + +    P GKLRI   +  G+  +   L +FL+ YP 
Sbjct: 63  AGQIYVQHCRSILEGLHQAELAVTQMQQTPQGKLRITAPVTYGEQKIAPLLNDFLIRYPK 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L N+ +D+     D A+RL + ++ SS + R+L   H+H  A P Y +    P 
Sbjct: 123 IDLELVLTNQKLDLIEQGVDIAVRLGQ-LEDSSSMARRLSDRHLHVCATPEYFEQHGMPH 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSG 240
           ++ +L  HN +       +  E+        R I    RI C   +S + ++   + G G
Sbjct: 182 TLSDLSSHNCLIGTHDHWRFKENHQ-----GRSIKVNGRIRC---SSGVVLLDAALKGIG 233

Query: 241 IALLPDYIVKDNPNLVRIME 260
           +  LPDY V ++ +  R++E
Sbjct: 234 LVQLPDYYVDEHLHAGRLIE 253


>gi|238752648|ref|ZP_04614120.1| Transcriptional regulator, LysR family [Yersinia rohdei ATCC 43380]
 gi|238709162|gb|EEQ01408.1| Transcriptional regulator, LysR family [Yersinia rohdei ATCC 43380]
          Length = 302

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 138/290 (47%), Gaps = 18/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA  GSFT AAE + L +SS+S++IS LE  +GI+L  R  R L LT  G +  
Sbjct: 8   MALFSRVAECGSFTRAAEMVGLPKSSVSQRISQLEKNLGIRLLNRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + LQ     PSG+LRI+    LG  LL     +F   YPD+ ++++
Sbjct: 68  VHCQEMLQAAERADLALQRLKDNPSGRLRISIPAGLGATLLARLAADFQQRYPDVLLEVM 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  +  D A+R  KP Q SSLI R+L     +  A+P YL         ++LD
Sbjct: 128 VSDTKVDLVEEGFDVALRTGKP-QDSSLIGRQLGYAPRYLLASPAYLAQHPPLTHPRQLD 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL-GSGIAL 243
            H          +C+    W A + R   E    ++  L V + L   + C L G GI L
Sbjct: 187 TH----------RCIAHRAWQALILRRDDEFYRWQVPALHVTNNLLYARECALSGGGITL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++ ++   N  L+ ++         +Y  YP    N+  L  F + +
Sbjct: 237 LPAFLSREVVINRQLIAVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVV 286


>gi|306841612|ref|ZP_07474307.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306288303|gb|EFM59671.1| LysR family transcriptional regulator [Brucella sp. BO2]
          Length = 293

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 142/298 (47%), Gaps = 27/298 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P +
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKN 179

Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            ++L++H LI +  DL+        P+   D+                  +V+S L  ++
Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+GI +L  +I + +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 226 AVRAGAGIGILHSFIARADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281


>gi|296101372|ref|YP_003611518.1| hypothetical protein ECL_01006 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055831|gb|ADF60569.1| hypothetical protein ECL_01006 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 301

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELTIFVAVVESGSFSRAAEQLGQANSAVSRSVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSVLQEMAAAETEIMETRSTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFASYRKIIASPQYIAEHGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            +++EL +H  + F +  P  +    W +A  D  + E  I+C L  NS  ++ Q C+ G
Sbjct: 180 ETVEELKQHLCLGFTE--PVSLN--TWPVACPDGQLHE--ITCGLSSNSGETLKQLCLEG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++       +LV +M D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGDLVELMADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|327479940|gb|AEA83250.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 307

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAETLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  +S  P G+LR+     L + +L   L  F   YPDIQ+
Sbjct: 64  AYYERVVRLLADMDDAETSLSGASTLPRGRLRVDVPSPLARMILVPALPAFHARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R    I   SL+ R++  + +  YAAP YL+    P   +
Sbjct: 124 DMGVSDRRVDLIDENVDCVVR-GGDITDQSLVARRVGDLRLGVYAAPGYLERAGTPRHPR 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ F     G + P  M        V   +G+  ++    N+YL+     + 
Sbjct: 183 ELENTHHRIVGFLWARAGKVFPYAMHGNGERVEV---LGQYVLAVDDGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LPDY+ K++     LV + E        +Y  +P     + KL+ F +++
Sbjct: 237 GLGILWLPDYMAKEHLARGELVLLFEHWQLEPMPLYVAFPPNRHVSAKLRVFIDWV 292


>gi|221212117|ref|ZP_03585095.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168202|gb|EEE00671.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 294

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 140/295 (47%), Gaps = 16/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDVIGEGFDLVLRI-GALEDSTLIARALGAWKMIACASPAYLKRHGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
             EL  H  + +G           W   VD   G PR   +Q     N+   +    + G
Sbjct: 180 PAELANHTCLLYGR-----ERRVGWEFRVD---GAPRTFDVQGPLVANNGEVVRDAAIAG 231

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLP +IV    D   LV +++       T+   +P+  +    L+ F  F+
Sbjct: 232 LGIALLPSFIVGAALDGGTLVPVLDAYAPAPITLNAVFPQHREGFVTLRTFIGFL 286


>gi|294851074|ref|ZP_06791750.1| hypothetical protein BAZG_03207 [Brucella sp. NVSL 07-0026]
 gi|294821717|gb|EFG38713.1| hypothetical protein BAZG_03207 [Brucella sp. NVSL 07-0026]
          Length = 308

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 144/296 (48%), Gaps = 21/296 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ RKLV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARKLVDYTLCLYAHRSYLEENGTPK 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRIS-----CLQVNSYLSIMQYC 235
           S ++L++H LI +       +ED      ++  +   P IS       +V+S L  ++  
Sbjct: 194 SPEDLNRHRLIGY-------VEDL----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAV 242

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 243 RAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296


>gi|197336991|ref|YP_002157609.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314243|gb|ACH63692.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 292

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 154/290 (53%), Gaps = 10/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L VF  VAR G+FT AA +L+ +QS++S++I+ LE +VGI LF+RHAR ++LT  G 
Sbjct: 4   FDCLNVFTRVARLGTFTAAANELNTTQSAVSKKIAWLEKQVGITLFHRHARAISLTAGGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R+   +  ++   + +L++     SG L+++         L   L EFL L+P++ +
Sbjct: 64  QYLRLALNLIDEMNLVESQLRQEQTSISGTLKLSVPSAFSIQKLSVPLNEFLNLHPELSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI- 183
            + + +K +D+     D AIR    ++ S L  +  +   +  +A+P YL+    P+ I 
Sbjct: 124 DVSVSDKFVDLVESDIDIAIRAAY-LKDSGLKAKWFMDNELAYFASPDYLEK-HPPIEIA 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +T+    P  +  FN        I E     ++ +S   ++Q   LG G+A 
Sbjct: 182 DDLAQHQCLTYSLSTPSNLWRFNDGKETKIKIKEQ----VRSDSPEMLVQMAKLGQGVAA 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P ++V+    + +L ++++   T    +Y  Y ++   + +++AF +FI
Sbjct: 238 MPKWMVEHELKSGSLTQVLDQYKTVKLPMYMVYKDSEHQSQRIRAFIDFI 287


>gi|330936795|gb|EGH40952.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 298

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA +L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+ + N   LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWGLYPQQRHLSPKVRKLVDYL 286


>gi|312884169|ref|ZP_07743881.1| putative transcription regulator protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368217|gb|EFP95757.1| putative transcription regulator protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 311

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 151/296 (51%), Gaps = 15/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  V   GSF+ AA +L +++S++S++I+ LE E+G +L  R  R L+LTE G 
Sbjct: 4   FNTIPIFVAVVECGSFSAAAYKLCITKSAVSKRINLLEEELGTRLLNRTTRKLSLTEAGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + H    +     +     + E   +P G L++   +  G   +   + EFL LYPD+ I
Sbjct: 64  RYHEYVIQSLSLAKQGIDAVAELQGQPRGTLKVTVPMSFGIAHITPFISEFLALYPDVDI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D+  +  D  IR+   +  S+LI R+L + +    A+ +YLK     LS +
Sbjct: 124 NLSLEDRMLDLVQEGFDIGIRIGD-LPDSNLIARRLTSCNSVLCASDNYLKKNPPILSPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +L  H+ I +      C    +W+   +    R + + R+S   +N+  +I Q  + G+G
Sbjct: 183 DLKHHDCIQYSYYQGGC----DWVLAKESKRFRILPKGRLS---INNSQAIRQATINGAG 235

Query: 241 IALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA LP +IV D+    R   I+ D   P   VY  +P+      K++ F NF+  K
Sbjct: 236 IANLPTFIVADDLKSGRLQVILSDYQLPQHGVYAVFPDKKHMPVKVRKFLNFMIDK 291


>gi|254785592|ref|YP_003073021.1| LysR family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237685205|gb|ACR12469.1| transcriptional regulator, LysR family [Teredinibacter turnerae
           T7901]
          Length = 329

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 140/288 (48%), Gaps = 6/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++    V  +GSFT A ++L LS++ IS+ IS +E + G++ F R  R +  TE G K
Sbjct: 26  DGIKTIVAVLETGSFTAAGDRLGLSKALISKYISLMEQQYGVRFFNRTTRKIAPTEAGLK 85

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     + ++  +    + E      G L+I+T++  G+ LL   + EF+  +P++ + 
Sbjct: 86  YYEKAQIILNEFASLVDFVSEKKDSLKGSLKISTSVTFGEFLLIDKIPEFMRTHPELHLD 145

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L N  ID+  +  D A+R+   I S +LI RK+        A+P YLK    P S  E
Sbjct: 146 INLSNHKIDLLEEGVDVALRISDRI-SPNLIARKITEFPFCLCASPTYLKAYGTPQSTAE 204

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I   +        F     +DR I  P  S + VNS  +I    + G GIALLP
Sbjct: 205 LQDHKCIVDSNFRITNEWPFQTADALDRTIAVP--SAISVNSPRAIRDLAINGVGIALLP 262

Query: 246 DYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++V  +     L  I+E+  T SF+++   P       K++ F  F+
Sbjct: 263 KFVVYKDIEAGILTEILENQSTLSFSLHALIPHREYIPNKVRYFIEFL 310


>gi|218516956|ref|ZP_03513796.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 363

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 149/310 (48%), Gaps = 20/310 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 3   DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    + +FL ++P+IQ
Sbjct: 63  RAYYNRCSEPLSHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISDFLKVFPEIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N  +D+  +  D  IR  + ++ S+++ ++L     +  AAP YLK    P   
Sbjct: 123 IDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPDYLKGRAPPSKP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L+ H  +    L+     +  W     R   + R+S  +    + ++  +   G GI 
Sbjct: 182 EDLEDHRCV----LLNGRNGEGEWHLVSGRKSVDLRVSGPISSRDFDAVSAFTYRGHGIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---------- 289
           LLP     +      LVR++ D  +P   V+  YP       +L+ F +           
Sbjct: 238 LLPSTYCDEQIRRGELVRVLPDWSSPEIFVHAVYPTRRFLPLRLQVFLDALKAWKSPLWL 297

Query: 290 -IFLKARDWK 298
            I L++RDW+
Sbjct: 298 PIALRSRDWR 307


>gi|229591355|ref|YP_002873474.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363221|emb|CAY50302.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
          Length = 299

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 139/288 (48%), Gaps = 19/288 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA + SFT A   L +S S+I + I+ +E  +G++LF+R  R +TLT +G+   
Sbjct: 7   LSVFVQVAETRSFTTAGRLLGVSSSAIGKSIARMEQRLGVRLFHRSTRSITLTSEGALFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +  ++E  + EL E+   P GKLRI  ++   + LL   L +F+  YP+I++ + 
Sbjct: 67  ERSRRILAEVEAAERELTEACATPRGKLRI--SVPQVRGLLMPVLSDFMRAYPEIELDVD 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  IR  KP + S L+ R L    +     P Y +    P   Q+L 
Sbjct: 125 FSDRMVDVIEEGFDAVIRTGKP-EDSRLMARHLGHYQLVLVGTPGYFREHGTPQHPQQLS 183

Query: 188 -----KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241
                +H     G L P       W   +     EP +    V++ +  + + VL G GI
Sbjct: 184 EHACLRHKFCATGKLEP-------WPLHLAPGASEPTLRTPLVSTTIESLNHVVLEGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A LPDY+V        L R+++D I    + +  +P +   T K++ F
Sbjct: 237 ACLPDYMVNHAVREGRLQRVLDDCIEHRGSFWMLWPSSRHATAKVRVF 284


>gi|170734917|ref|YP_001774031.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820955|gb|ACA95536.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 305

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 12/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE  +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTISEKAGEIYRQAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +     AAP YL+    P   
Sbjct: 126 IDLHLSDASVDLIADGFDAALRIAA-LPDSSLVARRLCAVTQFVVAAPQYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +EL     + +       +  F   A  +    P G      L+V +  +++   + G  
Sbjct: 185 RELADRPCLPYAYRARSAVWRFTNDAGDEESVMPTGP-----LRVTNADALLPTLLDGLA 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP++I  +   +  L  I+ D    +  +YF  P A     K+ A  ++ 
Sbjct: 240 IAELPEFIAGEYLADGRLEAILPDWSLTTGGLYFVTPSARARPAKVTALSDYF 292


>gi|162149547|ref|YP_001604008.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209544785|ref|YP_002277014.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161788124|emb|CAP57728.1| putative transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532462|gb|ACI52399.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 300

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 5/288 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  R+F  V  + SFT AA+ L + +SS+S  I  LE  VG +L  R  R +  T  GS 
Sbjct: 5   DLFRIFARVVETASFTRAADTLGMPRSSVSTAIRDLEARVGTRLLSRTTRIVAPTPDGSA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   +E  +   +  +  P G LR      +G+ ++   L +FL  YP I ++
Sbjct: 65  FYEQCVRLIADVEDAENLFRRDAAGPRGVLRADMPGRIGRLIVAPALPDFLARYPAIDVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  D  DCA+R+  P+  S+LI R+L T+ +   A+P YL     PL+  +
Sbjct: 125 LGVTDRAVNLVEDGIDCALRV-GPLHDSALIARRLGTLRLINVASPAYLARHGVPLAPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + +       +ED+ W    D P        + VNS  + +  C+ G G+  +P
Sbjct: 184 LPGHCAVRYASPTTGRIEDWEWTED-DTPRTLALPGRVTVNSAEAQIACCLAGLGLIQVP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y V+   D   LV ++ D       +   YP       +++AF +++
Sbjct: 243 AYDVRPHLDAGTLVEVLPDWRAAPLPMSVLYPHRKHVAHRVRAFIDWL 290


>gi|84684474|ref|ZP_01012375.1| transcriptional regulator, LysR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667453|gb|EAQ13922.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 294

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 20/289 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW  +R F  VA +GS + AA  L  SQ ++ RQ+  +ET +G++LF RHA+GL+LTE
Sbjct: 3   NLDWSLIRAFLAVAETGSLSAAARTLGSSQPTVGRQVREVETALGVELFQRHAKGLSLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ +      +   +    +      ++P+G +RI  ++ +   +L   L       P 
Sbjct: 63  TGAAMLSAAKRMRDSVGEIALIAAGQDMRPTGTVRITASVIVAHFVLPQILARLRRDEPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-----MHAYAAPHYLKN 176
           I+I+L+  +   ++    AD A+R+ +P Q        +VT+H     +  YAA  YL  
Sbjct: 123 IEIELVATDSSDNLLFREADIALRMYRPDQLD------MVTLHVTDLPLGIYAAKSYLDR 176

Query: 177 CREPLSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
              P ++++  K + + +   DL+ + M    W   VDR     R    Q  ++  I   
Sbjct: 177 VGRPDTVEDAFKLDWVGYDRSDLMLRGMRRLGW--AVDRTFFATRTDD-QAGNWQLIRAG 233

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           C  G GIA +     +D P + R+  D+  PS  V+    EA++ T ++
Sbjct: 234 C--GIGIAQI--ATAQDAPEVERLFPDMALPSLPVWLTAHEAMRRTPRI 278


>gi|269962155|ref|ZP_06176509.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
 gi|269833239|gb|EEZ87344.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
          Length = 291

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S +  +L +T  E+ +     SGK++I+   +L + ++      F+  YPDI I+
Sbjct: 64  FYHECSPLLQRLTSTAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNSFMKQYPDINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  ++    +     D   R+  P + SSLI RK+  +     A+P YL     P   +E
Sbjct: 124 LTTESNADQLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPDYLSANPAPNHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+L+    LI   + +    + V+   G       Q N+   +   C  G GI L+P
Sbjct: 183 LSNHSLLKGSPLIKWTLINSKGESVVNVERGR-----FQANALNVVRSSCSEGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++K   ++ +LVRI+ D       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMIKEYIESGDLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|170724740|ref|YP_001758766.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810087|gb|ACA84671.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 292

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 146/275 (53%), Gaps = 11/275 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT A+++L +S + +SRQ+S LET +  KLF+R  R ++ TE 
Sbjct: 2   FNWEGISEFVAVAEAESFTKASQRLGISTAQVSRQVSALETRLATKLFHRTTRKVSTTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L+  +  +      P G L+I   +  G+  +   + +F   YP++
Sbjct: 62  GRVYYQHCRQVLDGLDEAERAITNLQSSPRGLLKITAPVTYGEMTIAPLINDFAAKYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  A+P YL     P S
Sbjct: 122 EVKINLTNQKLDLIDEGYDLAIRLGQ-LEDSSMMAKRLSSRTQYVCASPSYLSTFGIPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL++HN +  G +     ED      V R  G   +SC   NS  +++   + G GI 
Sbjct: 181 LSELEQHNCL-LGTMDYWRFEDNGKTRNV-RVKGN--LSC---NSGHALVDAAIKGIGII 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            LPDY ++   ++  LV ++E   +P   ++  YP
Sbjct: 234 QLPDYYLQSFIEDGQLVPLLEQNRSPEEGIWALYP 268


>gi|309778790|ref|ZP_07673563.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308922498|gb|EFP68122.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 323

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 146/286 (51%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T  G+  +
Sbjct: 16  MQVFTRVVEASSFTKAADSLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE T+    +SS    G LRI     +G+ LL   +++F   YPD+Q+++ 
Sbjct: 76  ERCVRLLGDLEETEAAFSQSSSGARGTLRIDVPASIGKRLLVPRIRDFHEAYPDLQLEIG 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DCA+R  + +Q SSL+ R++  + M   A+P YL  C  P ++++L 
Sbjct: 136 MSDRTVDLVQEGVDCAVRGGE-LQDSSLVARRIGQLSMVNCASPEYLARCGTPKTLEDLQ 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + +         D++++    + I + R S + VN   S +   + G G+     +
Sbjct: 195 DHTAVNYFSARNGRRMDWDFVIDGQKQIHKVR-SMVSVNDAESAVACGLHGLGLLQTSRF 253

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V +   +  LV ++ D I+    V   YP     + K++ F +++
Sbjct: 254 LVYEHLMSGALVEVLPDYISEPVPVSVVYPHNRHLSPKVRVFVDWV 299


>gi|212634907|ref|YP_002311432.1| regulatory protein LysR:LysR substrate-binding [Shewanella
           piezotolerans WP3]
 gi|212556391|gb|ACJ28845.1| Regulatory protein, LysR:LysR, substrate-binding [Shewanella
           piezotolerans WP3]
          Length = 289

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 151/292 (51%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT AA +L +S + +SRQ+S LET +  KLF+R  R +++TE 
Sbjct: 2   FNWEGVSEFVAVAETESFTKAAGRLGISTAQVSRQVSTLETRLAAKLFHRTTRKVSVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L+  +  +      P G L+I   +  G++++   + +F+  YP++
Sbjct: 62  GRIYYQHCRQVLDGLDEAERAITNLQTTPRGLLKITAPVTYGESMIAPLINDFITQYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q+ L N  +D+  +  D AIRL + ++ SS++ ++L +   H  A+P Y+     P +
Sbjct: 122 EVQINLSNLKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLGSRTQHVCASPSYVSTYGLPHT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           + EL++HN +  G L      D+ W           R+   L  NS  +++   + G GI
Sbjct: 181 LSELEQHNCL-IGTL------DY-WRFQEKGKARNVRVKGNLSCNSGHALVDAAIKGLGI 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V    ++  L+ ++E+       ++  YP     + K++   +F+
Sbjct: 233 IQLPDYYVNSFIESGELMSLLENNRQADEGIWALYPHNRHLSPKVRMLLDFL 284


>gi|205351587|ref|YP_002225388.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271368|emb|CAR36161.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326626615|gb|EGE32958.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 304

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 149/298 (50%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR  + +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAGR-LTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            ++++L +H  + F +  P  +    W +A  D  + E  + C +  NS  ++ Q C+ G
Sbjct: 180 ETVEQLKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--VECGISSNSGETLKQLCLNG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|224826896|ref|ZP_03699995.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224600883|gb|EEG07067.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 295

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 13/284 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA SGSF+ AAE+L +S S +SRQ+  LE  +  +LFYR  R ++LTE G 
Sbjct: 4   WEGIAEFVAVAESGSFSRAAERLRVSSSHVSRQVMRLEERLQARLFYRSTRKVSLTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++    +   + +      P G LR+   +  G+  +   + +F+  +P + +
Sbjct: 64  TFFSHCQQLQEARDEAFLAVNALHSSPKGLLRMTCAVTYGERFVVPLVNDFMAGHPQLAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L N+  D+  +  D AIRL + +  SSL+  +L    MH  AAP YL +   P ++ 
Sbjct: 124 EIELTNRTADLLHEGFDLAIRLGQ-LADSSLVATRLAPRTMHLCAAPAYLAHHGTPHTLG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  +     +        W   +D RP         + NS  +++   + G G+  
Sbjct: 183 ELARHQCLIGTSTV--------WSFRLDGRPWHFKPQGRWRCNSGQAVLDAALRGFGLCQ 234

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           LPDY V++      LV ++     P+  V+  YP+    + KL+
Sbjct: 235 LPDYYVREPLRQGRLVELLPAHTPPNTAVWAVYPQQRHLSAKLR 278


>gi|149907718|ref|ZP_01896465.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149809388|gb|EDM69317.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 306

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 145/297 (48%), Gaps = 14/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  +GSFT AA++L + ++++SR++S LE ++ I L  R  R   LT
Sbjct: 6   MEHDLNDMMVFLAVVETGSFTLAADRLGIPKANVSRKVSRLEQQLNITLLERSTRSQHLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       V+ +L+     + E      G+L+I  +I  GQ +L+  L  F+  YP
Sbjct: 66  EAGKRYLIHCKRVHEELDLATASVSELLHSYKGELKIGASISTGQQILRPALATFMHQYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I +QL L N+ +D   +  D  IR+ + +  S LI +KL T     +++P YL     P
Sbjct: 126 EINVQLNLVNRRVDFIEEGFDVVIRIGQ-LADSMLIAKKLGTATRTLFSSPAYLAKHGTP 184

Query: 181 LSIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCV 236
             + +L  H L+      P   +   N ++T         +PR   L V+ +  + Q  +
Sbjct: 185 HVVSDLFTHQLLVMN---PTNNDPTLNLVSTAGEAFSVNCKPR---LLVDDFAILKQSLI 238

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GIA+LPDY+ +++     LV I+ +       VY  YP       K+K F  F+
Sbjct: 239 DGLGIAVLPDYMSREDVAAGRLVNILPNWGMEPVDVYALYPRHRAKIPKVKVFLEFV 295


>gi|153833886|ref|ZP_01986553.1| AphB/LysR family [Vibrio harveyi HY01]
 gi|156975361|ref|YP_001446268.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|148869828|gb|EDL68802.1| AphB/LysR family [Vibrio harveyi HY01]
 gi|156526955|gb|ABU72041.1| hypothetical protein VIBHAR_03092 [Vibrio harveyi ATCC BAA-1116]
          Length = 291

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S +  +L +T  E+ +     SGK++I+   +L + ++      F+  YPDI I+
Sbjct: 64  FYHECSPLLQRLTSTAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNAFMKQYPDINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  ++    +     D   R+  P + SSLI RK+  +     A+P YL     P   +E
Sbjct: 124 LTTESNADQLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASPDYLNANPAPNHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+L+    LI   + +    + V+   G       Q N+   +   C  G GI L+P
Sbjct: 183 LSNHSLLKGSPLIKWTLINSKGESVVNVERGR-----FQANALNVVRSSCSEGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++K   ++ +LVRI+ D       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMIKEYIESGDLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|163858827|ref|YP_001633125.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262555|emb|CAP44858.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 352

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 151/290 (52%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L  R  R ++LT  G+
Sbjct: 19  FQAMQVFVRVVDANSFTRAADSLALPRTTVTTAVQNLERRLGVRLLNRTTRRISLTPDGA 78

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  ++ +  ++E T+   QE++++P GKLRI     +G+ +L  +L EF   YPD+++
Sbjct: 79  AYYEHSTRILAEVEETEACFQEAALRPKGKLRIDVPASIGRLILIPSLCEFHTRYPDVEL 138

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +D+  +  DC IR  + ++ SSL+ R++ T  +   AAP YL+    P +++
Sbjct: 139 VLGMGDRRVDMVQEAVDCVIRGGE-LEDSSLVARRIGTFQVLTCAAPSYLERQGMPHTLE 197

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  + +     +   + NW   +D    E  +  C+ VN + + +   + G G+  
Sbjct: 198 DLKSHYAVHY--FSSRSGRNCNWDFVIDGKTREVDVPGCVSVNDWSAHLACALQGFGLVQ 255

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++      +  L+ ++         +   YP++ + + K++ F +++
Sbjct: 256 TARFMALPHLQSGELIEVLPQWKPRPVPISLLYPQSRQLSPKVRVFSDWV 305


>gi|254253418|ref|ZP_04946736.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124896027|gb|EAY69907.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 305

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 137/290 (47%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE  +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP + 
Sbjct: 66  RTISEKAGEIYRQAEEAESSAREMSVQPRGLVRLAVPMSYGLRWVAPLLPGFFRAYPGVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +     A+P YL+    P   
Sbjct: 126 IDLHLSDASVDLVADGFDAALRI-AALPDSSLVARRLCAVTQFVVASPEYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL     +++       +  F   A  + P+       L+V +  +++   + G  IA 
Sbjct: 185 RELVDRPCLSYAYRARSAVWRFTNDAGEEEPVMP--AGPLRVTNSDALLPTLLDGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++ 
Sbjct: 243 LPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVAALSDYF 292


>gi|323493354|ref|ZP_08098477.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio brasiliensis LMG 20546]
 gi|323312440|gb|EGA65581.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio brasiliensis LMG 20546]
          Length = 291

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 142/289 (49%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEESLNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S + ++L     E+ +     +GK+RI    +L + ++      F+  YPDI I+
Sbjct: 64  FYAECSPLLNRLTLAAEEITDECRGAAGKIRITAPSNLTKRMMMPMFNAFMSQYPDINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N+   +     D   R+  P + SSLI RK+ ++     A+P YLK    P   +E
Sbjct: 124 LTTSNQADQLDPTEWDVIFRV-GPQRDSSLIARKISSVADILVASPEYLKAHPAPTHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+L+    L+   + + +    V+   G       Q N+   +   C  G GI L+P
Sbjct: 183 LHQHSLLKGAPLLKWQLSNNSGETVVNNDKGR-----FQANTLNVVRSACSEGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D +++   ++ +LVR+++D       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMLREYIEDGSLVRVLQDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|299067896|emb|CBJ39109.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 305

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 144/286 (50%), Gaps = 21/286 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAAVRLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S    ++E       E    P GK+R+    D+G+ L+   +  F+  YPDI
Sbjct: 61  GQSLYQVASHALEEIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMQQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQKQGMPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY-----LSIMQYCVL 237
           +++L  HN + F         +  W     R +G   +  + V +      LS ++  + 
Sbjct: 180 VRDLSHHNCLDFRG---TGRGETQW-----RLVGPDGLKTVAVRARLNADSLSYLETLIA 231

Query: 238 GS-GIALLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
            S GI  LP Y   + + N   P LVR++ +  T    ++   P A
Sbjct: 232 SSAGIGPLPLYAGGVARANAPLPRLVRVLPEYATSGEPLHLVTPTA 277


>gi|162456631|ref|YP_001618998.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161167213|emb|CAN98518.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 343

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 134/276 (48%), Gaps = 19/276 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++ +F  V + GSFT AA  + + +S++SR+IS LE+ VG +L  R  R L+LT+ G  
Sbjct: 48  DEIVLFTRVVQGGSFTAAATAVGMPKSTVSRKISDLESRVGARLLQRTTRTLSLTDVGRV 107

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   LE  ++ + +    P G LR+  T  L  ++L   + E+L L+PD+Q+ 
Sbjct: 108 YYEHCVRIVAALEEAELAVSQLQSTPRGLLRV--TAPLAFSVLGPIVAEYLRLFPDVQVD 165

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+  ++ +D+  +  D A+R       +SL+ R+L  +     AAP   +   EP  I E
Sbjct: 166 LVCTDRRVDVVEERFDLALRAGA-TPDTSLVARRLGAVRRRLVAAPEVKRALGEPNDIAE 224

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241
           L  H  I F        E  +W       I E    PR   L VN Y  +      G G+
Sbjct: 225 LADHPCIVFAP------EGSSWELRSGPKIAEITVHPR---LVVNDYEMLRSVARAGFGV 275

Query: 242 ALLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYP 274
           ALLP+Y+  ++    R+M  + +   P   V+  YP
Sbjct: 276 ALLPEYLCAEDLAAGRLMPVLASWSAPEVPVFALYP 311


>gi|90414769|ref|ZP_01222738.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90324135|gb|EAS40717.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 300

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 18/290 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AAEQ+ L++S +S++I+ LE ++G++L YR  R LTLTE G  
Sbjct: 5   DDFLIFYHLIEQGSFSKAAEQVGLTKSVVSKRITRLEQDLGVQLVYRTTRKLTLTEAGEV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EVY+ ++  +  +       +G +R+      G+ LL   + EF   YP+I I 
Sbjct: 65  FFGHAREVYYSVQNAEEAMSGLGESLTGTIRLTVPTISGELLLPKAISEFSAKYPEIHID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +DI  +  D AIR  + +  SS I R+LV  H     AP Y      P    E
Sbjct: 125 MDLDNRFVDIVKEGFDLAIRTGE-LPDSSFIARRLVDAHWVICGAPEYFALNGVPKVASE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L  HN + +        E   WL       GE +   ++VN   +      + +  + G 
Sbjct: 184 LVNHNCLAYSYQETGAKE---WLFK-----GENKPYTIKVNGNFTTNNASALRRAALFGQ 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+  +P  +V ++    +L+ ++++ +     +Y  YP       K+K F
Sbjct: 236 GLVYVPKVLVAEDLKAGSLIEVLQEQVAKCLGIYAMYPYTRHQPIKVKLF 285


>gi|17986502|ref|NP_539136.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. 16M]
 gi|225853275|ref|YP_002733508.1| LysR family transcriptional regulator [Brucella melitensis ATCC
           23457]
 gi|256045431|ref|ZP_05448323.1| transcriptional regulator, LysR family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|17982104|gb|AAL51400.1| transcriptional regulatory protein, lysr family [Brucella
           melitensis bv. 1 str. 16M]
 gi|225641640|gb|ACO01554.1| transcriptional regulator, LysR family protein [Brucella melitensis
           ATCC 23457]
          Length = 308

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 27/299 (9%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENSTPK 193

Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           S ++L++H LI +  DL+        P+   D+                  +V+S L  +
Sbjct: 194 SPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 239

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 240 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296


>gi|146342957|ref|YP_001208005.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146195763|emb|CAL79790.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 302

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 12/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ + +F  V    SF  AA++L LS++S+S+ +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEAMAIFAKVVELRSFAGAAQELSLSKASVSKAVSRLEERLGTRLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +++    E  + E    S+ P G +R A  +  G   +   L  FL  YP++ 
Sbjct: 66  QRLSERAAQLLADGEAAETEALAQSLTPRGLVRFAVPMTFGVKKIAPLLPAFLEQYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +  +D+  +  D A+R+ + +  SSL+ R+L  +  +  AAP YLK    P   
Sbjct: 126 IDLHMSDATVDLIGEGFDLALRIAR-LPDSSLVARRLCPMPRYTVAAPSYLKRHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             L +H    +  L    +  +   A      RP G+     L+VN+  +++   + G G
Sbjct: 185 MHLAEHKCFGYAYLSTAGVWHYTNAAGEPASVRPAGQ-----LRVNNGEALLPAVLAGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LPD+IV D   +  +  ++E    P   ++   P       +++    F+
Sbjct: 240 IADLPDFIVGDAIASGEVEVVLEGWSQPEGAMHLVMPPGGPRPARVEVLSEFL 292


>gi|114564597|ref|YP_752111.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335890|gb|ABI73272.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 289

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 152/292 (52%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT AA++L +S + +SRQ+S LET +  KLF+R  R ++++E 
Sbjct: 2   FNWEGVSEFVAVAEAESFTKAAKRLGISTAQVSRQVSALETRMATKLFHRTTRKVSVSEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +      P G L+I   +  G+  L   + +F+  YP++
Sbjct: 62  GRIYYQHCRQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGEKTLAPLVNDFIAKYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  A+P Y+     P S
Sbjct: 122 EVKINLTNQKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLCSRTQYVCASPDYVSTFGIPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           + EL++HN +  G L      D+ W    +      R+   L  NS  +++   + G GI
Sbjct: 181 LSELEQHNCL-LGTL------DY-WRFQENGKTRNVRVKGNLTCNSGHALVDAAIKGIGI 232

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPD+ V    ++  LV ++E    P   ++  YP     + K++   +++
Sbjct: 233 IQLPDHYVLPFLEDGQLVPLLEQNRQPKEGIWALYPHNRHLSPKVRMLLDYL 284


>gi|293394639|ref|ZP_06638931.1| LysR family substrate-binding transcriptional regulator [Serratia
           odorifera DSM 4582]
 gi|291422765|gb|EFE96002.1| LysR family substrate-binding transcriptional regulator [Serratia
           odorifera DSM 4582]
          Length = 306

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 145/278 (52%), Gaps = 16/278 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F ++   GSF+ AAE   ++ S IS++I  LE  +G +L YR  R LTLTE G +
Sbjct: 9   NDLILFALIVECGSFSKAAESAGITSSVISKRIGRLEKSLGARLLYRTTRSLTLTENGQE 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+R    +  +++     + E S   +G +R++     G+ LL  ++ EF   +PD++++
Sbjct: 69  LYRHARTISSQMQEALYAVSERSEALTGTIRMSVPTISGELLLSESVAEFCTQHPDLKVE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+  +  D AIR    +  SSLI R ++        +P YL++  +P +  E
Sbjct: 129 MRLENRFVDLVNEGIDLAIR-TGTMPDSSLIARHILDSRWVIVCSPSYLEHHPQPTTTAE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L  HN +T+     +     NWL  V +P G+ +I+ LQVN  LS      I +  + G 
Sbjct: 188 LLNHNCLTY---TYQESGSANWL--VKQPTGD-QIAELQVNGNLSANNARAIRKAVIGGY 241

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           GIA++P  +V ++     L+ I+         VY  YP
Sbjct: 242 GIAMVPRCMVYEDLQQGKLLEILAGHCGKVLGVYAVYP 279


>gi|123441267|ref|YP_001005254.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088228|emb|CAL11016.1| putative LysR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 300

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 153/298 (51%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V   GSF+ AAEQL  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTVKKLENKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +  ++ T + EL ++ + P G LRI     +  +++   + EF   YP
Sbjct: 61  QEGEHYFRRVQNILREMATAENELLDNQLNPKGLLRIDAATPVVLHIIAPLMAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  RKL+T + H  A+P YLK    P
Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRV-GTLQDSTLRARKLMTSYRHILASPAYLKQYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  +L+ H  + F DL P       W LA  D  + E + S L  N+  +  + C+ G+
Sbjct: 180 QTAADLEHHLCLGFNDL-PTLNR---WPLAGADGQLYEIK-SDLASNNGETQRRLCLEGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++++ +    +L+ I+ +    V  P   VY+   +A+ N  +L+ F +FI
Sbjct: 235 GIACLSDFMIQQDLQRGDLIAILREHTLPVAMPINAVYYS-DQAVSN--RLRCFIDFI 289


>gi|330448395|ref|ZP_08312043.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492586|dbj|GAA06540.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 300

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 141/293 (48%), Gaps = 13/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  V +SG F  AA+ +  S S +S++I  LE  +G++L  R  R ++LT +G 
Sbjct: 7   FDGIALFVQVVKSGGFGAAAQAMGHSNSYVSKEIVKLENRLGVRLLNRTTRSISLTPEGK 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++    E     + +S+V P G L+I+  +  G++ L+     +L  YPD+ I
Sbjct: 67  SYYQECLQLISDAEQAVAHITQSTVAPKGTLKISCPVWFGKHYLKDVFSAYLARYPDVVI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +K ID+  D  D  IR    +  SSLI +++ +  +   A+P Y+     P+   
Sbjct: 127 DLDMSDKAIDVIGDGYDLVIRASAKLDESSLICKRIYSSRICTVASPEYIAKYGRPIHPA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVLGSG 240
           EL  H+   + +L    + D+     +D+   +  +   Q     N+ +S+   C  G G
Sbjct: 187 ELSSHHCFCYSNLKKSNIWDY-----MDKAGNQTSVDVHQRIRSNNTEMSLALVCN-GDG 240

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP++ ++       L+ + ED + P   VY  YP       K++ F + I
Sbjct: 241 IIRLPEFYIEQQIKTGELILLFEDYVFPMVDVYALYPTRKHLASKVRCFLDLI 293


>gi|161523076|ref|YP_001586005.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348098|ref|YP_001941294.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160346629|gb|ABX19713.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189338236|dbj|BAG47304.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 294

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 140/295 (47%), Gaps = 16/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDVIGEGFDLVLRI-GALEDSTLIARALGAWKMIACASPAYLKRHGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
             EL  H  + +G           W   VD   G PR   +Q     N+   +    + G
Sbjct: 180 PAELANHTCLLYGR-----ERRVGWEFRVD---GAPRTFDVQGPLVANNGEVVRDAAIAG 231

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLP +IV    D   LV +++       T+   +P+  +    L+ F  F+
Sbjct: 232 LGIALLPSFIVGAALDGGALVPVLDAYAPAPITLNAVFPQHREGFVTLRTFIGFL 286


>gi|270263131|ref|ZP_06191401.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042819|gb|EFA15913.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 308

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 142/280 (50%), Gaps = 9/280 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + + VF     +GSF  AA +LHLS+S++ + I+ LE  + ++LF+R  R L+LT
Sbjct: 1   MTDRLNGISVFVTAVGAGSFALAANRLHLSRSAVGKTIARLEQRLSVRLFHRTTRSLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+  +        ++ T +  L+    + SG+LR+   +  G+  +   L E    +P
Sbjct: 61  DDGALFYERCLRALEEIRTAETLLESGKREVSGRLRVTMPVLFGRICIAPLLTELAREHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +++ +D+  D  D AIR  +   SS L+ R+L    M   AAP YL+   EP
Sbjct: 121 GLELELSFNDRVVDLIEDGFDLAIRNGELGNSSGLVARRLGNHRMALCAAPAYLQRRGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLG 238
            +I++L +H+ + +     +     NWL      +    +  + LQ++   +I+   V G
Sbjct: 181 QNIEQLAQHDAVAY----VRAGVVRNWLIPEADGVTREMMPGTRLQMDDLQAIVDAAVAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            GIA LP ++V+       LVR+M D     F  +  +P+
Sbjct: 237 FGIAWLPCWLVRGQLIKGELVRVMRDRPGLFFDAHAVWPQ 276


>gi|119385959|ref|YP_917014.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119376554|gb|ABL71318.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 297

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 135/276 (48%), Gaps = 11/276 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  SFT AA +L +SQS++S+ I  LE  +GI+L  R  R ++ TE G
Sbjct: 5   NFNALATFATVARERSFTKAAAKLGISQSALSQSIRNLEERLGIRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S  + ++ET   +L     KP+G +RI T      ++LQ  L  FL  YPDI+
Sbjct: 65  ERLLTTISPKFDEIETALADLSAMRDKPAGTIRITTGEHPAVSILQPALATFLPEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI+D    DI     D  +RL + +    +  R    + M   A+P Y ++   P + 
Sbjct: 125 VELIVDYGLTDIVAQGYDAGVRLGEQLAKDMVAVRIGPEMRMAVVASPTYFEHRPIPQTA 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242
           ++L  HN I+    +P     F W    D    + R     V + L +   C L G GIA
Sbjct: 185 EDLIAHNCIS--SRLPTYGGIFQWGLEKDGHEVKVRSEGQLVLNTLGLRVACALDGLGIA 242

Query: 243 LLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCY 273
            LP+     YI +    L+R++ED   P F  Y  Y
Sbjct: 243 YLPEDQALPYIAEG--RLIRVLED-WCPRFPGYHLY 275


>gi|256114406|ref|ZP_05455131.1| transcriptional regulator, LysR family protein [Brucella melitensis
           bv. 3 str. Ether]
          Length = 308

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 27/299 (9%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGPTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENSTPK 193

Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           S ++L++H LI +  DL+        P+   D+                  +V+S L  +
Sbjct: 194 SPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 239

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 240 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296


>gi|152998913|ref|YP_001364594.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151363531|gb|ABS06531.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 298

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 137/277 (49%), Gaps = 13/277 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A+++L LS+S++S++I+ LE  +GI+L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +                  + E    P G LRIA  +  G+  +   + EFL  YP IQ+
Sbjct: 64  RYFDYVRPAVKLAADGLDAISELQQAPQGSLRIAVPMVFGRLYIAPLIPEFLRRYPKIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P + Q
Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLARHSAPQTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           +L +HN + +        +   W  T   P G  RI      QVN+  +I Q  + G GI
Sbjct: 183 QLSQHNCLFYSYF----RDGVEW--TFLSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGI 236

Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275
           A LP ++V+ +    R   ++ D   P   +Y  YP+
Sbjct: 237 ANLPHFMVEADLQTGRLQALLTDHPLPEHGIYAVYPQ 273


>gi|159186134|ref|NP_356288.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141268|gb|AAK89073.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 131/257 (50%), Gaps = 5/257 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  R+F  V    SFT AA+ L + +SS+S  +  LE  VG +L  R  R ++ TE GS 
Sbjct: 5   DLFRIFTRVVDCASFTRAADTLGIPRSSVSAAVQELEGRVGARLLNRTTRKVSPTEDGSA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   +E T+   ++++ +PSG+LRI     +G+ ++   L +FL LYP I I 
Sbjct: 65  FYERCQRLIADVEDTENLFRQTAAQPSGRLRIDVPGRIGRLVIAPALPQFLDLYPQIDIS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  D  DC +R+  P+  S LI R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRAVDLVEDNIDCVLRV-GPLSDSGLIARPIGKLRLINVASPAYLAQYGAPKTPHD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + +       +E++ W+   D     P  S + VN+  + +  C+ G G+  +P
Sbjct: 184 LSRHWAVNYASPSSGRVENWEWIEN-DALHSVPMRSRVTVNNAEAYIACCLAGLGLIQIP 242

Query: 246 DYIVK---DNPNLVRIM 259
            Y V+   ++  L+ +M
Sbjct: 243 AYDVRLHLESGELIEVM 259


>gi|270262453|ref|ZP_06190724.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043137|gb|EFA16230.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 306

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 150/297 (50%), Gaps = 13/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ ++  + +F  V   GSF+ A ++L +++S++S++I+ LE  +G++L +R  R L+LT
Sbjct: 1   MTDNFAAIPLFVAVVECGSFSAAGQRLGITKSAVSKRITQLEGSLGVQLLHRTTRSLSLT 60

Query: 61  EQGSKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           E G +     R    V  + E     LQ    +P G LR++  +  G+  +   +  FL 
Sbjct: 61  EAGEQYFGYARNACAVAQEGEDAITRLQG---QPQGILRLSVPMVFGRLHIAPLIPVFLA 117

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P+++I +++D+K +D+     D AIR+ + +  SSLI R++   +    AAP YL  C
Sbjct: 118 ACPEVEINMMMDDKLVDLVEGGYDLAIRIGR-LADSSLIARRIAPCYSVLCAAPAYLTRC 176

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P  + +L +HN + +          F       R   +PR +  QVN+  ++ +  + 
Sbjct: 177 GTPKDLAQLAQHNCLFYSYYRAGSEWQFQGPEGAVR--FQPRGN-YQVNNSEALREALLA 233

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+  +P +IV D+     L+ ++ D   P   +Y  YPE      K+ AF +F+ 
Sbjct: 234 GLGVCQMPTFIVGDDLAQGRLIELLPDHKLPEHAIYAVYPERKHVPAKVMAFVDFLL 290


>gi|296116017|ref|ZP_06834637.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977371|gb|EFG84129.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 302

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 140/268 (52%), Gaps = 27/268 (10%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  VA +GSF+ AA  L ++ S++S+ I  +E  +G++L  R  R L+LT++G   
Sbjct: 7   EMQVFVRVAEAGSFSEAARHLLMTPSTVSKLIGRMEERLGVRLIERSTRRLSLTDEGRLF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H  ++ +  +L   + E+   +   SG +R++ ++  G   ++  L EF   YP++ + L
Sbjct: 67  HERSAALLAELNDIEREVCHGAGGASGIVRVSASVPFGVLGIEPLLPEFWRTYPNVIVDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+ +D  D A R+  P+  SSL+ RK+        A+P YLKN   P++I +L
Sbjct: 127 SLSDEIVDLYLDRTDIAFRV-GPLTDSSLLARKIGVARRQIVASPDYLKNHGTPITIDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLA----------TVDRPIGEPRISCLQVNSYLSIMQYCV 236
           + HN + F         +F   A           VDR +G      L  N+  ++ +  +
Sbjct: 186 NHHNCLGF---------NFRRAAPVWPLREGRRIVDRMVG----GSLLANNGETVRRLVL 232

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMED 261
            G G+A L D+ V+D+    +LV ++ D
Sbjct: 233 AGVGLARLGDFHVRDDIAHGHLVEVLAD 260


>gi|54309397|ref|YP_130417.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913833|emb|CAG20615.1| putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 325

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 18/290 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AA+Q+ L++S +S++I+ LE ++G++L YR  R LTLTE G  
Sbjct: 30  DNFLIFYHLIEQGSFSKAADQVGLTKSVVSKRITRLEQDLGVQLVYRTTRKLTLTEAGEV 89

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EVY+ ++  +  +       +G +R+      G+ LL   + EF   YP+I I 
Sbjct: 90  FFGHAREVYYSVQNAEEAMSGLGESLTGTIRLTVPTISGELLLPKAISEFSAKYPEIHID 149

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +DI  +  D AIR  + +  SS I R+LV  H     AP Y      P    E
Sbjct: 150 MDLDNRFVDIVKEGFDLAIRTGE-LPDSSFIARRLVDAHWVICGAPEYFARNGVPKIASE 208

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGS 239
           L  HN + +        E   WL       GE +   ++VN         ++ +  + G 
Sbjct: 209 LVNHNCLAYSYQETGAKE---WLFK-----GENKPYTIKVNGNFTTNNASALRRAALFGQ 260

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+  +P  +V ++    +L+ ++++ +     +Y  YP       K+K F
Sbjct: 261 GLVYVPKVLVAEDLKAGSLIEVLQEQVAKCLGIYAMYPYTRHQPIKVKLF 310


>gi|83745678|ref|ZP_00942736.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207724811|ref|YP_002255208.1| hypothetical protein RSMK03208 [Ralstonia solanacearum MolK2]
 gi|83727755|gb|EAP74875.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206590036|emb|CAQ36997.1| hypothetical protein RSMK03208 [Ralstonia solanacearum MolK2]
          Length = 314

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 147/290 (50%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T  G+  +
Sbjct: 7   MQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE T+    +S+    G LRI     +G+ LL   +++F   YPD+Q+++ 
Sbjct: 67  ERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPDLQLEVG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DCA+R+ + +Q S+L+ R++  + M   A+P YL     P ++++L 
Sbjct: 127 MSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGQLSMVNCASPDYLARYGTPKTLEDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  + +    P+     +W   +D   G+ +I    S + VN   S M   + G G+  
Sbjct: 186 DHIAVNY--FSPRNGRRMDWDFVID---GQKQIHKVRSLVSVNDAESAMACALYGLGLLQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++  +   +  LV ++ D I+ S  V   YP     + K++ F +++
Sbjct: 241 TARFLAYEHLMSGQLVEVLPDYISESLPVSVIYPHNRHLSPKVRVFVDWV 290


>gi|260596398|ref|YP_003208969.1| hypothetical protein CTU_06060 [Cronobacter turicensis z3032]
 gi|260215575|emb|CBA27796.1| hypothetical protein CTU_06060 [Cronobacter turicensis z3032]
          Length = 305

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 138/290 (47%), Gaps = 20/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA +GSFT AA++  L +SS+S++IS LE  VG++L  R  R L+LT  G    
Sbjct: 8   MALFALVAETGSFTAAAQKAGLPKSSVSQRISQLEAHVGLRLLNRTTRTLSLTFAGEHYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + +Q     PSG+LRI +   +G  LL     EFL  YPDI +++ 
Sbjct: 68  VHCREMLDASERADLAVQRLRDNPSGRLRITSPAGIGATLLARMNAEFLARYPDITLEVF 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+ M+  D A+R  KP Q SSLI RK+     +  A+P YL          +L 
Sbjct: 128 ISDDVRDLVMEGFDVALRTGKP-QDSSLIGRKIGHCPRYLLASPAYLAQHPPLTHPAQLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGIA 242
           +H +I              WL   DR +      CL     Q ++ L   +  + G+G+ 
Sbjct: 187 EHRVIVHRAWT-------EWLLQRDREL----YRCLLNQMHQTDNLLYARESALAGAGVT 235

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LLP +++ D      L+ I+ +       +Y  YP    N   L ++ NF
Sbjct: 236 LLPAFLLDDTLKQGALINILPEWTVTGNDLYLVYPGRKLNAPALVSYINF 285


>gi|148253183|ref|YP_001237768.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405356|gb|ABQ33862.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 302

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 142/293 (48%), Gaps = 12/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ + +F  V    SF  AA++L LS++S+S+ +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEAMAIFAKVVELRSFAGAAQELSLSKASVSKAVSRLEERLGTRLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +++    E  + E    S+ P G +R A  +  G   +   L  FL  YP++ 
Sbjct: 66  QRLSERAAQLLADGEAAETEALAQSLTPRGLVRFAVPMTFGVKKIAPLLPAFLEQYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +  +D+  +  D A+R+ + +  SSL+ R+L  +  +  AAP YLK    P   
Sbjct: 126 IDLHMSDATVDLIGEGFDLALRIAR-LPDSSLVARRLCPMPRYTVAAPSYLKRHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             L +H    +  L    +  ++  A      RP G+     L+VN+  +++   + G G
Sbjct: 185 MHLAEHKCFGYAYLSTAGVWHYSNAAGEQASVRPAGQ-----LRVNNGEAVLPAVIAGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LPD+I+ D   +  +  I++    P   ++   P       +++    F+
Sbjct: 240 IADLPDFIIADAIASGEVEVILKGWSQPEGAMHLVMPPGGPRPARVEVLTEFL 292


>gi|209520289|ref|ZP_03269056.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499260|gb|EDZ99348.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 303

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 143/290 (49%), Gaps = 13/290 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  +GSF  AAE L +S+++ISR +  LE  +G++L +R  R L+LTE+G   
Sbjct: 6   EMTAFTAVVDAGSFVAAAETLRISKTAISRYVDALEQRIGVRLLHRTTRRLSLTEEGRLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   ++   ++  + E+   +  PSG +R+   +  G + L     +F+  YP I + +
Sbjct: 66  YQRARDILAAIDDAEAEVGSRTQVPSGSIRVNVPLSFGMSHLASIWGQFMAAYPQIDLDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ +D+  +  D A+R+   +  SSL+ RKL T  M   A+P YL     P   + L
Sbjct: 126 TLNDRVVDLVDEGYDLAVRI-SSLPDSSLVSRKLATTEMLTCASPDYLARNGMPSHPRNL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H ++ +  L     E   W    + P GE  +     +  N+  +     + G GI L
Sbjct: 185 AEHRVLAYTGLT----ERDEW--RFEGPEGEVVVRTRARVYSNNGDTCRAIALRGGGIIL 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P ++V    +   LVR++ +  + +  +Y  YP   +   K++   +F+
Sbjct: 239 QPSFMVAGDLERGQLVRVLPEYRSRALGIYAVYPSRKQLPLKVRCLVDFL 288


>gi|84684127|ref|ZP_01012029.1| transcriptional regulator, LysR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667880|gb|EAQ14348.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 301

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 141/299 (47%), Gaps = 18/299 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L +FL  +PD+ + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVNTDFGVNHLSPVLGQFLQDFPDVNVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+ + ++ SSL  RK+         +P+Y +    P+ I +L
Sbjct: 126 VLNNRYVELISEGFDMAIRVGE-MEDSSLRARKIADTTRRMVGSPNYFQKYGRPMRIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ +        +    +  V  P GE R       L VN   S++   + G GIA
Sbjct: 185 NEHKLLHY------SSQSSGNVWKVPAPSGEVRQVRTAGWLSVNDGQSLLNAAIAGLGIA 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP ++  D      ++ED I P        +Y  YP       K++AF +F+     D
Sbjct: 239 YLPSFLYADALEQ-GLVEDAI-PELPMDVQGIYAVYPPGRFTQPKVRAFIDFLVAAFND 295


>gi|149911195|ref|ZP_01899819.1| hypothetical transcriptional regulator [Moritella sp. PE36]
 gi|149805722|gb|EDM65720.1| hypothetical transcriptional regulator [Moritella sp. PE36]
          Length = 324

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 137/284 (48%), Gaps = 5/284 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GSFT AA+    S S IS++I+ LE+ +G++L +R  R L+LT +G    + 
Sbjct: 30  IFVEVVNNGSFTLAAQTSGHSTSYISKEINKLESRLGVRLIHRTTRSLSLTPEGEIYFQQ 89

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++    E T+  L    +KP G LRI+     G + +Q     FL  YP + ++L L+
Sbjct: 90  CQQIISDAEQTEEALNGHQLKPKGTLRISCPTSFGHSRMQSIFSRFLAKYPLVDLELDLN 149

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +D+  +  D  IR    +  S+LI +K+ + H    A+P YL++   P    EL +H
Sbjct: 150 NRKVDMVSEGFDVLIRGSGQLDDSTLISKKVFSSHGVIIASPEYLRHAGTPQDPSELIEH 209

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            +I +  L  K    + ++   D+       S +  NS    +  C+ G GI  +P + +
Sbjct: 210 KIINYSHL--KQPNTWTFIDNNDKQHHVQLKSRVLTNSPEMELSLCLAGHGITRMPLFNL 267

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D      LV +  D       +Y  YP     + K++ F +F+
Sbjct: 268 FDEIETGKLVELFSDFKRQEVNLYLVYPSRKHVSSKVRCFIDFV 311


>gi|256258241|ref|ZP_05463777.1| Transcriptional regulatory protein, LYSR family [Brucella abortus
           bv. 9 str. C68]
 gi|297249089|ref|ZP_06932797.1| hypothetical protein BAYG_03131 [Brucella abortus bv. 5 str. B3196]
 gi|297174222|gb|EFH33579.1| hypothetical protein BAYG_03131 [Brucella abortus bv. 5 str. B3196]
          Length = 308

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 144/296 (48%), Gaps = 21/296 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPMPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRIS-----CLQVNSYLSIMQYC 235
           S ++L++H LI +       +ED      ++  +   P IS       +V+S L  ++  
Sbjct: 194 SPEDLNRHRLIGY-------VEDL----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAV 242

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 243 RAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296


>gi|167616873|ref|ZP_02385504.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 299

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +T+ G 
Sbjct: 3   FDDLRIFVTTVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDLGH 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +R  + +   +  T+  +        G L+I+  +  G   L   + EFL+ +P +++
Sbjct: 63  EFYRRATRILADVAETEEAMSARHGDLRGTLKISAPMSFGIAYLSPLIAEFLVRHPAVRL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y +  R P +  
Sbjct: 123 HVDLSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRKHRAPATPA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L  H  + +G           W  T+    G  R       L  N+   I    + G G
Sbjct: 182 DLHGHACLLYGQ-----EGRTGWEFTIG---GARRTFEVQGALLANNGDVIRDAAIAGLG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IALLP +IV    D   LV ++E        V   YP+  ++    +AF  FI
Sbjct: 234 IALLPHFIVAAALDAGLLVTVLEPFAQSPLPVSAVYPQHRQDMATCRAFLGFI 286


>gi|167578737|ref|ZP_02371611.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 299

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +T+ G 
Sbjct: 3   FDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDLGH 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +R  + +   +  T+  +        G L+I+  +  G   L   + EFL+ +P +++
Sbjct: 63  EFYRRATRILADVAETEEAMSARHGDLRGTLKISAPMSFGIAYLSPLIAEFLVRHPAVRL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y +  R P +  
Sbjct: 123 HVDLSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRKHRAPATPA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L  H  + +G           W  T+    G  R       L  N+   I    + G G
Sbjct: 182 DLHGHACLLYGQ-----EGRTGWEFTIG---GARRTFEVQGALLANNGDVIRDAAIAGLG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IALLP +IV    D   LV ++E        V   YP+  ++    +AF  FI
Sbjct: 234 IALLPHFIVAAALDAGLLVTVLEPFAQSPLPVSAVYPQHRQDMATCRAFLGFI 286


>gi|83717647|ref|YP_440164.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651472|gb|ABC35536.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 399

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +T+ G 
Sbjct: 103 FDDLRIFVTTVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDLGH 162

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +R  + +   +  T+  +        G L+I+  +  G   L   + EFL+ +P +++
Sbjct: 163 EFYRRATRILADVAETEEAMSARHGDLRGTLKISAPMSFGIAYLSPLIAEFLVRHPAVRL 222

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y +  R P +  
Sbjct: 223 HVDLSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRKHRAPATPA 281

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L  H  + +G           W  T+    G  R       L  N+   I    + G G
Sbjct: 282 DLHGHACLLYGQ-----EGRTGWEFTIG---GARRTFEVQGALLANNGDVIRDAAIAGLG 333

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IALLP +IV    D   LV ++E        V   YP+  ++    +AF  FI
Sbjct: 334 IALLPHFIVAAALDAGLLVTVLEPFAQSPLPVSAVYPQHRQDMATCRAFLGFI 386


>gi|257140794|ref|ZP_05589056.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 299

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +T+ G 
Sbjct: 3   FDDLRIFVTTVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDLGH 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +R  + +   +  T+  +        G L+I+  +  G   L   + EFL+ +P +++
Sbjct: 63  EFYRRATRILADVAETEEAMSARHGDLRGTLKISAPMSFGIAYLSPLIAEFLVRHPAVRL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y +  R P +  
Sbjct: 123 HVDLSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRKHRAPATPA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L  H  + +G           W  T+    G  R       L  N+   I    + G G
Sbjct: 182 DLHGHACLLYGQ-----EGRTGWEFTIG---GARRTFEVQGALLANNGDVIRDAAIAGLG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IALLP +IV    D   LV ++E        V   YP+  ++    +AF  FI
Sbjct: 234 IALLPHFIVAAALDAGLLVTVLEPFAQSPLPVSAVYPQHRQDMATCRAFLGFI 286


>gi|319426217|gb|ADV54291.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 292

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 149/296 (50%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSTLENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           EL +HN +         + + N+   V+   G  R       L  NS  ++    + G G
Sbjct: 183 ELSQHNCL---------IGNHNYWRFVEN--GRERNIKVRGNLNCNSGYALRDAALKGIG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LPDY ++++     L+  ++        ++  YP+    + K++   +++  K
Sbjct: 232 IVQLPDYYIEEDIQAGRLLSFLDSHREAKEGIWALYPQNRHLSAKIRVLVDYLAEK 287


>gi|59714292|ref|YP_207068.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59482540|gb|AAW88179.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 300

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 139/296 (46%), Gaps = 8/296 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+F+   +D + +F  V  SGSFT AA     S S IS++I  LE  +G++L +R  R L
Sbjct: 1   MAFNSALFDGMVIFSEVVTSGSFTQAALNSGHSTSYISKEIGKLEERLGVRLLHRTTRTL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT +G    +   ++    +  +  +     KP G+L+++  +    + L+  L +F  
Sbjct: 61  RLTPEGELYFQQCQQLIEDAQMAENSITGQQEKPKGRLKVSCPVGFALSRLRPILGKFTD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYPDI ++L L++K IDI  +  D AIR    ++ SSLI R+ +       A+P YLK  
Sbjct: 121 LYPDIILELDLNDKKIDIVAEGFDMAIRASHQLEDSSLISRRFLRSKAITIASPGYLKKH 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             PL   +L  H  I +  +    + DF       +P      S +  N+    +  C+ 
Sbjct: 181 GAPLYPHDLSSHKTIGYAYVKQGAIWDF--FDKNKQPFSVQLNSQVITNNSFMALSLCLA 238

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GI  +P + + D      LV +  D    +  ++  YP     + K++ F +FI
Sbjct: 239 EQGITRIPHFHLTDELETGKLVELFADYPKLTIDIFMVYPSRKHMSAKVRCFMDFI 294


>gi|227112818|ref|ZP_03826474.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 297

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 134/287 (46%), Gaps = 6/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L LSQS++S  I GLE  +G++L  R  R +  TE G
Sbjct: 5   NFNDLISFLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL       +  +E+  + L +   +P+G +RI        ++L   LK FL+ YPDI 
Sbjct: 65  EKLAHSLGPHFADIESELVALGDMRERPAGNIRITAGEHAVDSILWPVLKPFLVNYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + +DN   DI +   D  IRL + ++   +  R    + M    +P+Y      P++ 
Sbjct: 125 VDITVDNALADIVLGRFDAGIRLGEQVEKDMIAVRVAPEMSMAVVGSPNYFARNPAPVTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W      R I       L +NS    +    +G G+A
Sbjct: 185 QDLQHHRCINL--RLPTMGGIYAWEFEKNGREIKVRVEGQLTMNSLRQRIDAARIGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P+  V+++     L+R++ +   P    Y  YP   ++T     F
Sbjct: 243 YVPEDSVQNDIASGRLIRVLTEWCPPFPGYYLYYPSRKQHTTAFSLF 289


>gi|62290695|ref|YP_222488.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82700611|ref|YP_415185.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus
           2308]
 gi|254703598|ref|ZP_05165426.1| Transcriptional regulatory protein, LYSR family [Brucella suis bv.
           3 str. 686]
 gi|254708316|ref|ZP_05170144.1| Transcriptional regulatory protein, LYSR family [Brucella
           pinnipedialis M163/99/10]
 gi|254714672|ref|ZP_05176483.1| Transcriptional regulatory protein, LYSR family [Brucella ceti
           M644/93/1]
 gi|256255734|ref|ZP_05461270.1| Transcriptional regulatory protein, LYSR family [Brucella ceti
           B1/94]
 gi|256370237|ref|YP_003107748.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260168031|ref|ZP_05754842.1| Transcriptional regulatory protein, LYSR family [Brucella sp.
           F5/99]
 gi|62196827|gb|AAX75127.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82616712|emb|CAJ11797.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Brucella melitensis biovar Abortus 2308]
 gi|256000400|gb|ACU48799.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
          Length = 301

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 27/299 (9%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 8   AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 68  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 128 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 186

Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           S ++L++H LI +  DL+        P+   D+                  +V+S L  +
Sbjct: 187 SPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 232

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 233 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 289


>gi|295700491|ref|YP_003608384.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439704|gb|ADG18873.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 305

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 144/301 (47%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S +++SR ++ LE  +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARAMGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTICEKAGEIYRQAEEAESAAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +     A+P YLK  R P   
Sbjct: 126 IDLHLSDASVDLVADGFDAALRIAA-LPDSSLVARRLCAVTQFVVASPAYLKRERRPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL     +++       +  F   A  + P+       L+V +  +++   + G  IA 
Sbjct: 185 RELVGRPCLSYAYRARSDVWRFTNAAGEEEPVMP--TGPLRVTNSDALLPTLLDGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWK 298
           LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++    L    W+
Sbjct: 243 LPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVAALSDYFAEHLSEPSWR 302

Query: 299 F 299
           +
Sbjct: 303 W 303


>gi|254719820|ref|ZP_05181631.1| LysR family transcriptional regulator [Brucella sp. 83/13]
 gi|265984838|ref|ZP_06097573.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306839518|ref|ZP_07472326.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|264663430|gb|EEZ33691.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306405463|gb|EFM61734.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 293

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 141/298 (47%), Gaps = 27/298 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+  +LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVAHRLVDYTLCLYAHRSYLEENSTPKS 179

Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            ++L++H LI +  DL+        P+   D+                  +V+S L  ++
Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+GI +L  +I + +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 226 AVRAGAGIGILHSFIARADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281


>gi|163845410|ref|YP_001623065.1| hypothetical protein BSUIS_B1310 [Brucella suis ATCC 23445]
 gi|189024909|ref|YP_001935677.1| LysR family transcriptional regulator [Brucella abortus S19]
 gi|225628384|ref|ZP_03786418.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|237816197|ref|ZP_04595192.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|254689986|ref|ZP_05153240.1| Transcriptional regulatory protein, LYSR family [Brucella abortus
           bv. 6 str. 870]
 gi|254694477|ref|ZP_05156305.1| Transcriptional regulatory protein, LYSR family [Brucella abortus
           bv. 3 str. Tulya]
 gi|254698136|ref|ZP_05159964.1| Transcriptional regulatory protein, LYSR family [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254700475|ref|ZP_05162303.1| Transcriptional regulatory protein, LYSR family [Brucella suis bv.
           5 str. 513]
 gi|254717570|ref|ZP_05179381.1| Transcriptional regulatory protein, LYSR family [Brucella ceti
           M13/05/1]
 gi|254731020|ref|ZP_05189598.1| Transcriptional regulatory protein, LYSR family [Brucella abortus
           bv. 4 str. 292]
 gi|256160528|ref|ZP_05458217.1| Transcriptional regulatory protein, LYSR family [Brucella ceti
           M490/95/1]
 gi|163676133|gb|ABY40243.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020481|gb|ACD73203.1| Transcriptional regulatory protein, LYSR family [Brucella abortus
           S19]
 gi|225616230|gb|EEH13278.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|237788659|gb|EEP62872.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
          Length = 308

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 27/299 (9%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 193

Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           S ++L++H LI +  DL+        P+   D+                  +V+S L  +
Sbjct: 194 SPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 239

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 240 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296


>gi|260565678|ref|ZP_05836161.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265991861|ref|ZP_06104418.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|265999312|ref|ZP_06111641.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260151051|gb|EEW86146.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|263002817|gb|EEZ15220.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093197|gb|EEZ17294.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326409837|gb|ADZ66902.1| LysR family transcriptional regulator [Brucella melitensis M28]
 gi|326539552|gb|ADZ87767.1| transcriptional regulator, LysR family protein [Brucella melitensis
           M5-90]
          Length = 293

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENSTPKS 179

Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            ++L++H LI +  DL+        P+   D+                  +V+S L  ++
Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 226 AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281


>gi|167584840|ref|ZP_02377228.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 334

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 148/287 (51%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQNNNRKPHGKLRIDMPGSIGRLLVIPSLCEFHSRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++      + A+P YL+   EP SI++L 
Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRIGLFECTSVASPAYLEKYGEPQSIEDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +     +     +W   +D    E ++ S + VN   + +   + G G+   P 
Sbjct: 186 QHKAVNY--FSSRTGRVIDWTFLIDGKEVEIKMDSVVSVNDADAYVTCGLEGFGLVQPPL 243

Query: 247 YIVKDNPNLVRIMEDV--ITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  +    R+ E +  I P    +   YP +   + K++ F ++I
Sbjct: 244 FMVLPHLREGRLKEVLPGIKPLPMPISVVYPHSRHLSPKVRVFVDWI 290


>gi|330721628|gb|EGG99646.1| Transcriptional regulator2C LysR family2C in formaldehyde
           detoxification operon [gamma proteobacterium IMCC2047]
          Length = 294

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 150/294 (51%), Gaps = 17/294 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT AA+QL +S + +SRQ+S LET +  KL +R  R +++TE 
Sbjct: 2   FNWEGVTEFVAVAETESFTAAAKQLDISTAQVSRQVSALETRLATKLLHRTTRKVSVTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++   ++   LE+ +  + +    P+GKL+I   +  G+  +   +  FL  YPD+
Sbjct: 62  GNIYYQRCRQILEDLESAEDAISDMQSHPTGKLKITAPVTYGEATIAPLVNNFLKRYPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++ L N   D+  D  D AIR +  +  S+++ ++L +   +  A   YL+   +P  
Sbjct: 122 DVEVNLSNLKKDLIEDGFDIAIR-QGNLGDSTMMAKRLSSRTFYVCATSEYLERYGKPEK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
             +L+KHN          C++  N  W   V+      R++  L+ NS   ++   +   
Sbjct: 181 PADLEKHN----------CLQSMNEFWYFQVNGKARNIRLTGNLRSNSGHVLLDASLKSI 230

Query: 240 GIALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP DY+    ++ +L  I+E+   P   V+  YP+    + K++   +++
Sbjct: 231 GIVQLPGDYVCPHVESGDLEVILEEYRAPDQGVWALYPQNRHLSSKVRLLLDYL 284


>gi|330959221|gb|EGH59481.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 298

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA++L +S S +SRQI+ LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIARLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMGLYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N  +D+  +  D AIRL + +Q S  +  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRRVATRLAPRQMYLCASPSYIQRYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELSRHNCLIGGS-------DTWLLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+    +  LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQKHLKDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286


>gi|23502686|ref|NP_698813.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|23348697|gb|AAN30728.1| transcriptional regulator, LysR family [Brucella suis 1330]
          Length = 301

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 27/299 (9%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 8   AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 68  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 128 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 186

Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           S ++L++H LI +  DL+        P+   D+                  +V+S L  +
Sbjct: 187 SPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 232

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 233 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 289


>gi|50122057|ref|YP_051224.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612583|emb|CAG76033.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 297

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 133/287 (46%), Gaps = 6/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L LSQS++S  I GLE  +G++L  R  R +  TE G
Sbjct: 5   NFNDLISFLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL       +  +E+  I L +   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  EKLAHSLGPRFADIESELIALGDMRDRPAGNIRITAGEHAVDSILWPMLKPFLANYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ +DN   DI +   D  IRL + +    +  R    + M    +P+Y      P++ 
Sbjct: 125 IEITMDNALTDIVVGRFDAGIRLGEQVAKDMIAVRIAPEMSMVVVGSPNYFARNPVPITP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W      R I       L +NS    +    +G G+A
Sbjct: 185 QDLQHHRCINM--RLPTMGGIYAWEFEKSGREIKVRVEGQLTMNSLRQRIDAAQIGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P+  V+D+     L++++ +   P    Y  YP   ++T     F
Sbjct: 243 YVPEDSVRDDIASGRLIQVLTEWCPPFPGYYLYYPSRKQHTTAFSLF 289


>gi|265995700|ref|ZP_06108257.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|262766984|gb|EEZ12602.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
          Length = 293

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGPTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENSTPKS 179

Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            ++L++H LI +  DL+        P+   D+                  +V+S L  ++
Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 226 AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281


>gi|258544572|ref|ZP_05704806.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
 gi|258520203|gb|EEV89062.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
          Length = 297

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 151/297 (50%), Gaps = 20/297 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  +  SGSFT A+E L +S +  S+ +S LE  +GI+L  R++R L+LT +G   +
Sbjct: 7   LKIFAQIVESGSFTRASEYLGISTAMASKHLSHLEKHLGIRLMQRNSRSLSLTAEGEVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R + E    L+    +       P G LR+   I     +    ++E+   YP++ + +I
Sbjct: 67  RQSIEALQLLDAAAAQAGSGRETPQGHLRLTAPIWCANPVFADWMREYRARYPEVSLDII 126

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LDN   D+  +  D A+R+ R PI   SL+ R+L  +     A+P Y++    P ++++ 
Sbjct: 127 LDNDMRDLIGEGIDLALRVSRAPI--PSLVVRRLFEVRFALVASPAYIRRHGLPRTLEDA 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-----ISCLQVNSYLSIMQYCVLGSGI 241
             H+ +         +  +  ++ +D   G+        S LQ NS + + Q  + GSGI
Sbjct: 185 ASHSAV---------LPSYADISRMDCRRGDESHTLHLHSALQSNSTVMLHQLLLAGSGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             LP ++ +D+     LVR++ D    S T++  YP+    + K+++F +F+  KA+
Sbjct: 236 GYLPLWLAQDDLTAGRLVRLLPDWQLRSITLHAAYPDRRHLSAKIRSFIDFLVEKAK 292


>gi|240137637|ref|YP_002962108.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
 gi|240007605|gb|ACS38831.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
          Length = 298

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 136/290 (46%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ L  F  +AR G    AA +L +  +++SR+I+ LE  +  KLF R + G  LTE 
Sbjct: 2   FDWNDLTFFLELARHGRLMPAARRLKVDNTTVSRRIAELERGLDTKLFQRCSDGFLLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G KL  +   +  K+ +   EL  S   +P+G++R+A+   +    L     EF    P 
Sbjct: 62  GHKLFVIAEAIEQKMLSVPDELGLSDGAEPAGRVRVASMEGIAAFYLSAKFAEFAAAMPG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+ +   I+++   AD ++    P Q   L  R++    +  + A  Y      P 
Sbjct: 122 IVVELVTERHLINLTKREADISVSFVPP-QGPRLQVRRVGEFRLALFGAERYFATHGRPT 180

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +L  H+ + +  DL+   +E  +WL  V +P         +  S  +       G+G
Sbjct: 181 TRADLQDHDFVDYVDDLV--AIEPVHWLLEVLKPTN----VVFRSTSMAAQQTAVAAGAG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + LLP +  K NP L+ ++ D +     +Y    E ++  G+++A   F+
Sbjct: 235 LGLLPLFSAKTNPALIPVLADDVVVQRELYLGVHEDIEYAGRIRAVTRFL 284


>gi|170767711|ref|ZP_02902164.1| transcriptional regulator, LysR family [Escherichia albertii
           TW07627]
 gi|170123199|gb|EDS92130.1| transcriptional regulator, LysR family [Escherichia albertii
           TW07627]
          Length = 304

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACCDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|13476319|ref|NP_107889.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14027080|dbj|BAB54034.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 299

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 144/290 (49%), Gaps = 15/290 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  V  +GSFT AA  L + ++++SR+++ LE EVG++L  R  R L LT+ G
Sbjct: 3   DLNDVVVFARVVEAGSFTAAARLLAMPKTTVSRRVAALEREVGVRLLQRTTRSLNLTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +  +S+    +E   + L E+  +PSG +RI+  +  G + L   + +FL LYP   
Sbjct: 63  RLYYEQSSQGLRTIEEANLRLAEARAEPSGTIRISAPVGFGGHFLIRAVVDFLALYPKTN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L +  +++  D  D A R  + ++ S+LI RKL + H    A+  YL     P   
Sbjct: 123 VELRLTDDKLNLIEDGIDLAFRTGR-LEDSTLIARKLGSTHRLLCASHDYLARYGIPEGP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
            +L +H  +  G          +W+  +D P G+  +        N   ++    + G G
Sbjct: 182 ADLARHRCVIAG----PSASGAHWV--LDGPQGQETVVVAGRFAANEMQAVAAAALAGFG 235

Query: 241 IALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA LP    D ++ +   L R+++   TP+  ++  +P +   +  +KAF
Sbjct: 236 IAQLPQPMADGLINEG-RLRRVLDGYTTPAGGLHVLFPSSRHLSPLVKAF 284


>gi|113970123|ref|YP_733916.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113884807|gb|ABI38859.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 293

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 147/292 (50%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + +FT AA++L++S + +SRQI  LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAENFTLAAQRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  + +    P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAITDLKGSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   EP ++ 
Sbjct: 124 NVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGEPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELNQHNCLIGNHNYWRFIEN-------GRERNIKVRGNLICNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           PDY ++++     L+  ++        ++  YP+    + K++   +++  K
Sbjct: 236 PDYYIEEDIHAGRLISFLDAHREAKEGIWALYPQNRHLSAKVRVLVDYLAEK 287


>gi|77459913|ref|YP_349420.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383916|gb|ABA75429.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 299

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 143/281 (50%), Gaps = 9/281 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SFT       +S S++ + I+ LE  + ++LF+R  R +TLT +G+     
Sbjct: 9   VFVQVAETRSFTETGRLQGVSSSAVGKSIARLEARLNVRLFHRTTRSITLTSEGTLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++  ++E  + EL +++  P G LR+  ++    +L+   + EF+ LYP I++ L L 
Sbjct: 69  CRKILAEVEAAEFELCDAAAAPHGNLRV--SLPQVHDLVMPVMNEFMALYPQIELDLDLT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  IR  KP + S L+ R L   HM   A+P YL+   EPL+  +L +H
Sbjct: 127 DRMVDVVEEGFDAVIRTGKP-RDSRLMARPLGEFHMVLVASPAYLRERGEPLTPADLAEH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDYI 248
             +         +E  +W    +    EP +    V++ +  +++  L G GIA LPD++
Sbjct: 186 ACLRHTFHATGKLE--SWPFNREEGAPEPTLPTRLVSTSIEAVRHAALAGMGIACLPDFM 243

Query: 249 V---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +   +    L R++++ +      +  +P +   T KL+ F
Sbjct: 244 IFEAQQQGRLQRVLDEHLEHVGQFWVLWPSSRHATAKLRVF 284


>gi|87119248|ref|ZP_01075146.1| hypothetical transcriptional regulator [Marinomonas sp. MED121]
 gi|86165639|gb|EAQ66906.1| hypothetical transcriptional regulator [Marinomonas sp. MED121]
          Length = 302

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 136/288 (47%), Gaps = 5/288 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF  V  SGSFT AA+    S S IS++I  LE  +G++L +R  R L+LT +G  
Sbjct: 9   DGMVVFVEVVNSGSFTQAAQNSGHSTSYISKEIHKLEARLGLRLMHRTTRSLSLTPEGEA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++  S +  + E  +  L    ++P G LRI+       + +   +  FL  YP + + 
Sbjct: 69  YYQQCSLIISQAEEAESALSGQQLEPKGDLRISCPTSFALSQMPCIIANFLDKYPLVNLD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+  +  D  +R    +  SSLI RK+   H    AAP YL     P    +
Sbjct: 129 VDLNNRKVDMITEGYDILVRGAHQLDDSSLISRKVYASHAVTIAAPSYLAKYGVPQHPND 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I++  L  K    + ++    +    P  S L  N+    +  CV G+GI  LP
Sbjct: 189 LINHQTISYSYL--KQPNIWQYVDEHQKSFQVPVKSRLMTNNSELELDLCVAGNGITRLP 246

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + +KD      LV++ E+       +Y  YP     + K++ F +F+
Sbjct: 247 RFSLKDELETGKLVQLFEEYDKHKIDIYLIYPSRKHLSSKVRCFIDFV 294


>gi|326797070|ref|YP_004314890.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326547834|gb|ADZ93054.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 302

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +   V  SGSF+ AAE+L +S+S+IS+++S LE ++G+KL +R  R L+LTE G    
Sbjct: 7   ISILVTVVESGSFSKAAERLGISKSAISKRVSQLEAQLGVKLLHRTTRKLSLTEAGEHFF 66

Query: 68  RVTSEVYHKLETTQIE-LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +++ H+     I+ + +   +P G+L+I+  +  G+  L     +FL  YP I I L
Sbjct: 67  K-HAQIAHQASKDAIDAVAQLQGEPQGRLKISCPMSFGRLHLAPLTPKFLKKYPKITIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D+K  DI     D AIR    +  S+L+ RKL  +     A+  YL     P  ++ L
Sbjct: 126 VMDDKISDIIGQGFDLAIR-GGVLPDSNLVVRKLAPLRSVLCASQTYLNQHGVPAELEAL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + F        +   W    +  +    IS   QVNS  ++ +  + G GI  LP
Sbjct: 185 SSHNCLAF----TYSNDKREWTFMKEGEVQRISISGNYQVNSSEALKEAIIQGLGIGRLP 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +I        NLV + E+   P  ++Y  YPE      K++ F +FI
Sbjct: 241 TFIAGPEIKKGNLVALFEEYEMPRQSMYAVYPERHYLPKKVRVFIDFI 288


>gi|254436489|ref|ZP_05049983.1| hypothetical protein OA307_1359 [Octadecabacter antarcticus 307]
 gi|198251935|gb|EDY76249.1| hypothetical protein OA307_1359 [Octadecabacter antarcticus 307]
          Length = 295

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   +
Sbjct: 1   MEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V +        +      PSG LRI+   D G N L   L +FL  +PDI + ++
Sbjct: 61  DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLGEFPDITVNMV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +++  +  D AIR+ + ++ S+L  RKL        A+P Y +    P  I +L+
Sbjct: 121 LNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETSRRMIASPGYFEQFGRPQKIDDLN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243
            H L+ + +     +    W   +  P GE R       L VN   S++   + G GIA 
Sbjct: 180 DHKLLHYSNQSNSAV----W--KLKAPSGEKRQVRTAGWLTVNDGQSLLNAAISGLGIAY 233

Query: 244 LPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++  D     LV   + D+   +  +Y  YP       K++AF +F+
Sbjct: 234 LPSFLYADALAKGLVEEAIPDLPVDTQGIYAVYPPGRFTQPKVRAFIDFL 283


>gi|190892415|ref|YP_001978957.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697694|gb|ACE91779.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 300

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 146/300 (48%), Gaps = 15/300 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VAR GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 3   DLNDIAVFVKVARYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    + +FL  YP+I+
Sbjct: 63  RAYYDRCSEPLAHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISDFLKAYPEIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N  +D+  +  D  IR  + ++ S+++ ++L     +  AAP YL++   P + 
Sbjct: 123 IDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPGYLRDRAFPTNP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +    L+     +  W     R   + R+S  +    + ++  +   G GI 
Sbjct: 182 EDLKDHRCV----LLNGRNGEAEWHLISGRKSVDVRVSGAISSRDFDAVSAFTYRGHGIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298
           LLP     +      L+R++ D  +P   V+  YP     T +    R  +FL A + WK
Sbjct: 238 LLPSTYCDEQIERGALIRVLPDWSSPEIFVHAVYP-----TRRFLPLRLQVFLDALKAWK 292


>gi|262278398|ref|ZP_06056183.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258749|gb|EEY77482.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 344

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 145/287 (50%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SF+ AA+ L L ++S++  I GLE  + ++L  R  R L+LT  G+  +
Sbjct: 9   MKVFNKVVETNSFSLAADSLGLPRASVTTTIQGLEKHLQVRLLNRTTRKLSLTPDGAVYY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             TS +   +E  +    +S   P G+LRI     +G+ +L   L +F   YPDI + + 
Sbjct: 69  ERTSRILADVEDVESNFHDSERGPRGRLRIDVKASIGRLILIPMLCDFHAKYPDIDLVIG 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR+ + ++ SSL+ R++ TI     AAP YL    EP +I +L 
Sbjct: 129 MSDRPVDLVQDAVDCVIRIGQ-LKDSSLVARRIGTIQCVTVAAPRYLAEHGEPQTIDDLQ 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           KH ++ + +   +   + +W   VD  I    +   + VN   S +   V G G+   P 
Sbjct: 188 KHQVVHYFN--SRTGRNIDWDFMVDGEIHSVGVKGRVSVNDGDSYVDLAVQGFGLIQCPY 245

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+V    ++ +L  ++ + +     +   Y +    + K++ F +++
Sbjct: 246 YMVAKHLEDGSLKEVLTEWLPAPMPISVVYLQNRHLSPKVRVFVDWV 292


>gi|289671727|ref|ZP_06492617.1| LysR protein [Pseudomonas syringae pv. syringae FF5]
          Length = 311

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 144/296 (48%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + +KL  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVKLLNRTTRRVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  ++  P G+LR+     L   LL   L  F   YPDIQI
Sbjct: 64  VFYERVVRLLADMDDAETSLSSAASLPRGRLRVDVPSPLASMLLMPALPGFHARYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R  + I   SL+ R++  + +  YAAP YL+    P+  Q
Sbjct: 124 DMGVSDRMVDLIGENVDCVVRGGE-IADQSLMARRVGDLQLGVYAAPDYLQRMGTPVHPQ 182

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ +     G  +P  M+       V    G   ++    N+Y++     + 
Sbjct: 183 ELEDSAHRIVGYLWARTGKALPYAMQRNGEKLHVQ---GRYTLAVDDGNAYVAA---GLA 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LPDY+ K   +   LV + ED    S  +Y  +P     + K++ F ++I
Sbjct: 237 GMGILWLPDYMAKLYRERGALVPLFEDWQLDSMPMYVAFPPNRHISIKVRVFIDWI 292


>gi|254460462|ref|ZP_05073878.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           HTCC2083]
 gi|206677051|gb|EDZ41538.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 295

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   +
Sbjct: 1   MEAFATVVDQGGFTDAAKRMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V +        +      PSG LRI+   D G N L   L +FL  +PDI + ++
Sbjct: 61  DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLSEFPDITVNMV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +++  +  D ++R+ + ++ SSL  RKL        A+P Y +    P  I +L+
Sbjct: 121 LNNRYVELISEGFDMSVRIGE-LEDSSLRARKLTETTKRMIASPAYFEKYGRPEKIDDLN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243
            H L+ + +     +    W  T   P GE R       L VN   S++   + G GIA 
Sbjct: 180 DHKLLHYSNQSSGNV----WKVTA--PSGEKRQIRTAGWLSVNDGQSLLNAAISGLGIAY 233

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++  +      +V  + ++ T +  +Y  YP       K++AF +F+
Sbjct: 234 LPSFLYSEAMEQGLIVDAIPELPTETQGIYAVYPPGRFTQPKVRAFIDFL 283


>gi|167648289|ref|YP_001685952.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167350719|gb|ABZ73454.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 302

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 147/291 (50%), Gaps = 8/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF  VA +GSF  AAEQL+LS++++S+ ++ LE  +G  LF+R +R L+LTE G
Sbjct: 5   DFEAWAVFAKVAETGSFVRAAEQLNLSKATVSKAVTRLEQRLGATLFHRTSRRLSLTEAG 64

Query: 64  -SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            + L R T+ +  + ET + E    S  P G +R+A  +  G   L   L EF  LYP++
Sbjct: 65  RASLDRATN-MLREGETLEAEASAQSATPRGLVRVAAPMSFGIAHLGPALPEFFALYPEV 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L L ++ +DI  +  D A+R+   ++ SSL+ R+L  + +    +P Y      P  
Sbjct: 124 SIELSLSDQLVDIVEEGFDLALRISA-LEDSSLLARRLCPVRLMLVGSPAYFDKHGRPGH 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H+ + + +   K +  F         +     S L+VN+   +    + G G+A
Sbjct: 183 PKDLTAHSGLFYTNSRTKDVWRFEHAEHGQYAVS--LRSPLRVNNADILRPSLLAGLGLA 240

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + PD++  ++     L  ++ D   P   ++   P +     +++    F+
Sbjct: 241 MQPDFLTWEDVKSGLLEEVLADWAPPPIALHLVTPPSTIRPARVEVLIAFL 291


>gi|27379064|ref|NP_770593.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27352214|dbj|BAC49218.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 302

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 138/291 (47%), Gaps = 10/291 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DWD  R    + R GS + AA+QL +  +++ R++  LE  +  KLF R   G  LTE
Sbjct: 6   AIDWDDFRFVLAIVRGGSVSAAAKQLGVDHATVIRRVDRLEKHLSAKLFDRRKTGYLLTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +   +   Q ++  S  + +G +RI      G   L   L  F   YPD
Sbjct: 66  AGQRVADSAEAMESTIVANQEQVGGSVARLTGTVRIGAPDGFGTAFLAPRLAPFADRYPD 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +QL+   +   +S   AD AI L  P +   ++ RKL+   +  YAAP YL      +
Sbjct: 126 LDLQLVATARLFSLSKREADIAISLTMP-KEGRIVGRKLLDYRLGLYAAPAYLDRFPTIV 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISC-LQVNSYLSIMQYCVLGS 239
           S + L +H  + +       +E+  +   +D  P   PRIS   +  + ++ +   + G 
Sbjct: 185 SREVLPQHRFVGY-------IEELLFTPELDYLPQVSPRISARFRSANLIAQLNATLSGF 237

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+LP ++  D P LV ++ + I+ + T +       K+  +++A  ++I
Sbjct: 238 GIAVLPHFMASDYPQLVAVLPEEISITRTFWMLMHADSKDLARIRAVADYI 288


>gi|330504220|ref|YP_004381089.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918506|gb|AEB59337.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 308

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 141/285 (49%), Gaps = 15/285 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G F+ AAE+L LS S +SRQ++ LE  +  +LFYR  R + LTE G 
Sbjct: 4   WEGLDEFVAVAECGQFSAAAERLGLSTSQVSRQVARLEDRLQSRLFYRSTRRVALTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + +   +P G LR+   +  G+  +   + +F+  +P +++
Sbjct: 64  LFLQHCQRLQDAREEALRAVGDLGAEPKGLLRMTCAVAYGERFIVPLVNDFMARHPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L N+ +D+  +  D AIRL + +Q S L+  +L    M+  AAP YL+    P S+ 
Sbjct: 124 EIELSNRQLDLLHEGLDLAIRLGR-LQDSRLMAARLAPREMYLCAAPEYLQRYGRPHSLS 182

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           EL +HN LI   D         +W    +    + R+    + NS  +++   + G G+ 
Sbjct: 183 ELARHNCLIGSSD---------HWSFAENSRETQVRVQGNWRCNSGQAVLDAALRGFGLC 233

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            LPDY V +   +  L+ ++E    P+  V+  YP+    + K++
Sbjct: 234 QLPDYYVLEYLRSGRLISLLEQHRPPNTAVWALYPQQRHLSPKIR 278


>gi|37679026|ref|NP_933635.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37197768|dbj|BAC93606.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 295

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 10/260 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+ +  F  VA SGSFT AA +L  S +++SR++  LE  +G+KL  R  R ++LTE
Sbjct: 4   NIHWEGVNEFVAVAESGSFTQAATRLETSVANVSRRVGQLEERLGVKLLLRSTRKVSLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +    +   L   ++ + +    P GKLRI   +  G+  +   L  FL+ YP 
Sbjct: 64  AGQIYVQHCRSILEGLHQAELAVTQMQQTPQGKLRITAPVTYGEQKIAPLLNGFLIRYPK 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L N+ +D+     D A+RL + ++ SS + R+L   H+H  A P Y +    P 
Sbjct: 124 IDLELVLTNQKLDLIEQGVDIAVRLGQ-LEDSSSMARRLSDRHLHVCATPEYFEQHGMPH 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSG 240
           ++ +L  HN +       +  E+        R I    RI C   +S + ++   + G G
Sbjct: 183 TLSDLSSHNCLIGTHDHWRFKENHQ-----GRSIKVNGRIRC---SSGVVLLDAALKGIG 234

Query: 241 IALLPDYIVKDNPNLVRIME 260
           +  LPDY V ++ +  R++E
Sbjct: 235 LVQLPDYYVDEHLHAGRLIE 254


>gi|317402486|gb|EFV83054.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 313

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 145/304 (47%), Gaps = 24/304 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ AA  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLYYFSQVVEQGGFSAAARALDIPKSRLSRRISHLEESLGVRLLQRTTRRLRLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+          +++   +P+G + ++  + + Q++L   L EFL  +P I 
Sbjct: 63  ERYLHYCREMAASARAADDAMRQLQSEPTGPVVVSCPVSIAQDVLAPLLPEFLDAWPAIS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++ N+ +D+  +  D A+R+R  + + + L+ R L T      A+P YL+    P +
Sbjct: 123 VQLLVTNRRVDLIREGVDLALRVRTKLDTDAELVVRHLGTARGTLVASPGYLQRHGAPDT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235
            Q+L  H  ++F D       +  W    D+  GE       P++SC   N ++ +++  
Sbjct: 183 PQDLASHTTLSFSD----PQNEVRWPLRNDK--GEEVHIELKPQLSC---NDFIVLVEAA 233

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291
           V G GIALLP    ++      LV ++    +P   V+  YP      G + A R  + F
Sbjct: 234 VRGRGIALLPSIATQEELRRGQLVPVLPQWQSPEGIVHCIYP---SRRGMMPAVRTLLDF 290

Query: 292 LKAR 295
           L  R
Sbjct: 291 LSQR 294


>gi|104783724|ref|YP_610222.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95112711|emb|CAK17439.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 301

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 145/293 (49%), Gaps = 19/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF+ AA Q  LS + +SRQ+  LE E+G +L  R  R L LTE G+  +
Sbjct: 7   MQTFRRVVDLGSFSAAATQAGLSHTVLSRQVKNLERELGTQLLNRTTRRLQLTEAGALFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++  +++   +EL E   +P+G LR+      G+  L   L +F+  +  +QI+L 
Sbjct: 67  RHCVQILEQMQAMTLELSEHQQQPTGTLRLGVATAFGELELGRWLPDFVERHERLQIELN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  +R+   +  SSL+ RKL T  +   AAP YL+    P +   L 
Sbjct: 127 CSDRFVDLLEEDIDVCLRVTDHLPDSSLVARKLATSEVLLVAAPAYLERHGCPSTPDALA 186

Query: 188 KHNLITFGDLI-PKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVLGSG 240
            H L+ +  L+ P+ ++       +  P GE      PR   L  NS +++    + G G
Sbjct: 187 AHPLLGYSQLLHPQRLQ-------LHGPAGETTDVVMPRR--LSANSPMALRAAAIGGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA    +IV D   +  L  ++E    PS  +Y  YP++     K++A  +F+
Sbjct: 238 IASFDRFIVHDALLDGRLTPVLEGWSLPSRALYAIYPQSRYLAPKVRALLDFV 290


>gi|260547065|ref|ZP_05822803.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260755522|ref|ZP_05867870.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260758745|ref|ZP_05871093.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260762579|ref|ZP_05874916.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|261214793|ref|ZP_05929074.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261219404|ref|ZP_05933685.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261222949|ref|ZP_05937230.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261315815|ref|ZP_05955012.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261322466|ref|ZP_05961663.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261750979|ref|ZP_05994688.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261754233|ref|ZP_05997942.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|261757479|ref|ZP_06001188.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265998908|ref|ZP_06111465.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|260095430|gb|EEW79308.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260669063|gb|EEX56003.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260673005|gb|EEX59826.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675630|gb|EEX62451.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260916400|gb|EEX83261.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|260921533|gb|EEX88186.1| transcriptional regulator [Brucella ceti B1/94]
 gi|260924493|gb|EEX91061.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261295156|gb|EEX98652.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261304841|gb|EEY08338.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261737463|gb|EEY25459.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261740732|gb|EEY28658.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261743986|gb|EEY31912.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|262553597|gb|EEZ09366.1| transcriptional regulator [Brucella ceti M490/95/1]
          Length = 293

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179

Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            ++L++H LI +  DL+        P+   D+                  +V+S L  ++
Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 226 AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281


>gi|24373613|ref|NP_717656.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24347948|gb|AAN55100.1|AE015647_6 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 291

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 152/296 (51%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + +FT AA++L++S + +SRQI  LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAENFTLAAQRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  + +    P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAITDLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEC 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   EP ++ 
Sbjct: 124 NVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGEPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           EL++HN +         + + N+   ++   G  R       L  NS  ++    + G G
Sbjct: 183 ELNQHNCL---------IGNHNYWRFIEH--GRERNFKVRGKLICNSGYALRDAALKGIG 231

Query: 241 IALLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LPDY ++++ +  R++  + T       ++  YP+    + K++   +++  K
Sbjct: 232 IVQLPDYYIEEDIHAGRLISFLDTHREAKEGIWALYPQNRHLSAKVRVLVDYLAEK 287


>gi|86145017|ref|ZP_01063349.1| putative transcriptional regulator [Vibrio sp. MED222]
 gi|218677043|ref|YP_002395862.1| Transcriptional regulator [Vibrio splendidus LGP32]
 gi|85837916|gb|EAQ56028.1| putative transcriptional regulator [Vibrio sp. MED222]
 gi|218325311|emb|CAV27333.1| Transcriptional regulator [Vibrio splendidus LGP32]
          Length = 289

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 146/297 (49%), Gaps = 25/297 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA   SFT AA++L  S + ISR+++ LE  + +KL  R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAERESFTGAAQKLATSVAQISRRVANLEERLAVKLLNRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P G L++   +  G+  L   L +FL L+P ++
Sbjct: 63  QLYYQQCKLLVEGLEIAELAVTQMQSTPKGLLKVTAPVTYGERQLAPILHQFLKLHPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L N+ +D+     D AIRL + ++ SSL+ +KL    ++  A+P Y++   EP ++
Sbjct: 123 LELMLTNQKLDLIDSGVDVAIRLGR-LEDSSLVAKKLSQRQLYVCASPEYIERYGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQYCV 236
            EL  H  +  G       E + +     +  G P       RI C   NS L++     
Sbjct: 182 SELSNHQCLVGG------FEHWRF-----KENGRPRSVRVNGRIKC---NSGLALQDAAK 227

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              G+  LP+Y V ++     LV ++ D       ++  YP+    + K++   +F+
Sbjct: 228 QSIGLVQLPEYYVSEDLESGELVEVLSDYRDDKEGIWALYPQNRNLSSKVRLLVDFL 284


>gi|332162784|ref|YP_004299361.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318606893|emb|CBY28391.1| transcriptional regulator LysR family, yafC [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667014|gb|ADZ43658.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330861051|emb|CBX71321.1| uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           enterocolitica W22703]
          Length = 300

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 153/298 (51%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V   GSF+ AAEQL  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTVKKLENKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +  ++ T + EL ++ + P G LRI     +  +++   + EF   YP
Sbjct: 61  QEGEHYFRRVQNILREMATAENELLDNQLNPKGLLRIDAATPVVLHIIAPLMAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  RKL+T + H  A+P YL+    P
Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRV-GTLQDSTLRARKLMTSYRHILASPAYLRQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  +L+ H  + F DL P       W LA  D  + E + S L  N+  +  + C+ G+
Sbjct: 180 QTAADLEHHLCLGFNDL-PTLNR---WPLAGADGQLYEIK-SDLASNNGETQRRLCLEGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++++ +    +LV I+ +    V  P   VY+   +A+ N  +L+ F +FI
Sbjct: 235 GIACLSDFMIQQDLQRGDLVAILREHTLPVAMPINAVYYS-DQAVSN--RLRCFIDFI 289


>gi|298370395|ref|ZP_06981711.1| transcriptional regulator, LysR family [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298281855|gb|EFI23344.1| transcriptional regulator, LysR family [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 298

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 143/290 (49%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AAEQL +S +  S+ +S LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAAEQLDISTAMASKHVSHLENSIKAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +    NL+   L E+   YP++ + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGNLISNWLVEYRERYPEVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ K + S SLI + L  I     A+P YL     P + +E  
Sbjct: 127 LDNRHVDLIAEGFDLALRVAKTL-SPSLIIKPLAKIQFVLLASPDYLAKHGTPQTPEEAM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYCVLGSGIAL 243
            H  I     +P   +  N +    R  GE  I  L    Q ++ L I +    G+GIA 
Sbjct: 186 HHPAI-----LPSYTDQRN-MEITHRETGEKSILTLNPVIQCDNTLMIRELIRTGAGIAY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P + V+ +     L R++ D    +  +   Y +    + K+++F +F+
Sbjct: 240 QPLWSVRQDLAEGRLARLLPDYRVLTVQLNAVYVDRAFLSAKVRSFIDFL 289


>gi|260884544|ref|ZP_05896158.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|260874072|gb|EEX81141.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
          Length = 293

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 141/298 (47%), Gaps = 27/298 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPMPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179

Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            ++L++H LI +  DL+        P+   D+                  +V+S L  ++
Sbjct: 180 PEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 226 AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281


>gi|300697765|ref|YP_003748426.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074489|emb|CBJ54040.1| putative transcription regulator protein, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 314

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 147/290 (50%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T  G+  +
Sbjct: 7   MQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE T+    +S+    G LRI     +G+ LL   +++F   YPD+Q+++ 
Sbjct: 67  ERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHNAYPDLQLEVG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DCA+R+ + +Q S+L+ R++  + M   A+P YL     P ++++L 
Sbjct: 127 MSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGQLSMVNCASPDYLARYGTPKTLEDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  + +    P+     +W   +D   G+ +I    S + VN   S M   + G G+  
Sbjct: 186 DHIAVNY--FSPRNGRRMDWDFVID---GQKQIHKVRSLVSVNDAESAMACALHGLGLLQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++  +   +  LV ++ D I+ S  V   YP     + K++ F +++
Sbjct: 241 TARFLAYEHLMSGQLVEVLPDYISESLPVSVIYPHNRHLSPKVRVFVDWV 290


>gi|190892094|ref|YP_001978636.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697373|gb|ACE91458.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 297

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 6/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VAR  SFT AA +L +SQS++S  I GLE  +G++L  R  R ++ TE G +
Sbjct: 7   DDLIAFLAVAREQSFTKAAAKLGVSQSALSHTIRGLEARLGLRLLTRTTRSVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       + ++E++   L     KP+G +RI        ++L   L+ FL  YPD++I+
Sbjct: 67  LLVSIGPRFDEIESSLTALSAFRDKPAGTIRINAGEHAANSVLWPALERFLPEYPDVRIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+D    DI  +  D  +RL + +    +  R    + M    AP Y     +PL+  +
Sbjct: 127 IIVDYGLTDIVAERYDAGVRLGEQVAKDMVAVRIGPDMRMAVVGAPTYFDGRPKPLTPHD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALL 244
           L  HN I     +P     + W    D      R+    V + +++ ++  + G+G+A L
Sbjct: 187 LTDHNCINL--RLPTYGGVYVWEFEKDGRELNVRVEGQLVFNNIALRLKAALAGTGLAYL 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           P+  V+   +N  LVR++ED   P    +  YP
Sbjct: 245 PEDAVQAHLENGQLVRVLEDWCPPFPGYHLYYP 277


>gi|149915358|ref|ZP_01903885.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810647|gb|EDM70488.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           AzwK-3b]
          Length = 295

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 141/295 (47%), Gaps = 24/295 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   +
Sbjct: 1   MEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V +        +      PSG LRI+   D G N L   L  FL  +PDI + ++
Sbjct: 61  DRALRVLNDAGEADALVSSMQSAPSGLLRISVATDFGVNHLSPVLGGFLEEFPDISVNMV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +++  +  D A+R+ + ++ SSL  RKL        A+P YL+    P  I +L+
Sbjct: 121 LNNRYVELISEGFDMAVRIGE-LEDSSLRARKLTETTKRMIASPAYLQKYGRPAKIDDLN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243
           +H L+ +       +    W  T   P GE R       L VN   S++   + G GIA 
Sbjct: 180 EHRLLHYTSQANGSV----WKLTA--PSGEKRQVRTAGGLSVNDGQSLLNAAISGLGIAY 233

Query: 244 LPDYI----VKDNPNLVRIMEDVIT--PSFT--VYFCYPEALKNTGKLKAFRNFI 290
           LP ++    ++D      ++EDVI   P  T  +Y  YP       K++AF +F+
Sbjct: 234 LPSFLYAKAMQDG-----LVEDVIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFL 283


>gi|260777888|ref|ZP_05886781.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605901|gb|EEX32186.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 294

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 13/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD +  F  VA + SFT AA++L  S + ISR++S LE  + +KL  R  R +++TE G
Sbjct: 3   NWDGVSEFVAVAETQSFTAAAKKLDTSVAQISRRVSALEERLAVKLLNRTTRKVSVTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P G L++   +  G+  L   L +FL  YP + 
Sbjct: 63  QVYYQQCKHLVEGLELAELAVTQMQSTPKGLLKVTAPVTYGETHLAPLLLDFLESYPQVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ ID+     D AIRL + +Q SSL+ ++L +  ++   +P YL    EP ++
Sbjct: 123 LDLNLTNQKIDLIEMGVDVAIRLGR-LQDSSLVAKRLSSRQLYVCGSPDYLARYGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL+ H  +  G +      D+ W     +     R+S  +  NS  +++     G G+ 
Sbjct: 182 SELESHQCL-VGSI------DY-WRFKESKREKSLRVSGRIHCNSGSALLDAAKRGLGLV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LPDY V+   D+  L+ ++ D       ++  YP+    + K++   +F+  K
Sbjct: 234 QLPDYYVREGLDSGELIEVLSDYRDDREGIWALYPQNRNLSPKVRLLIDFLAEK 287


>gi|157964020|ref|YP_001504054.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157849020|gb|ABV89519.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 304

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 146/293 (49%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  VA S  F+ AA  L +S+S++S++I+ LE ++G +LFYR  R L+LTE G 
Sbjct: 4   FNAIPIFVAVADSAGFSSAARVLGISKSAVSKRITQLEQQLGARLFYRSTRNLSLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++  S+     +  +  + E   +P G L+I   + +GQ  L   + EF+  YP+IQI
Sbjct: 64  RYYQYASQANRAAKQAEDAVSELQGEPKGLLKIQVPMTIGQMHLASLIPEFIERYPEIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SI 183
            L++D+ +I++     D AIR    +  S+LI R LV +H     +P + +  R+ L S 
Sbjct: 124 DLVMDDDEINLIEQGFDLAIRADDLV-DSNLIARLLVPLHSVVCVSPSFYQKHRQQLTSP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   N I +     K  + + + A              +VN+  ++    + G G A 
Sbjct: 183 SQLADLNCILYS--YSKNADVWQFNANNGDEFKVKVTGNYRVNNSAALRDAVIAGMGAAR 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP ++        +LV I +D   PS  +   YPE      K++ F +++  K
Sbjct: 241 LPTFVAGAAIQRGDLVAIFKDYTMPSKKLNAIYPERHYLPAKVRVFLDYVIEK 293


>gi|114565210|ref|YP_752724.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114336503|gb|ABI73885.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 288

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 137/277 (49%), Gaps = 19/277 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA + SFT A ++L +S + +SRQIS LE  +  KLFYR  R ++LTE+G+
Sbjct: 4   WEGIFEFVAVAETDSFTVAGKRLSISTAQVSRQISQLENRLNTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   +V + L+  +  +     KP G +RI   +  G+  +   + +F+  YPDI++
Sbjct: 64  VYYQHCRQVLNSLDEAERAISSLKDKPQGLIRITAPVTYGEKFIMPIVIDFMQQYPDIEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+ +D+     D AIRL + + +S+++ ++L +   +  AAP Y+     P ++ 
Sbjct: 124 ICELTNQQLDLVDGGYDLAIRLGR-LTNSTMMAKRLTSRSQYVCAAPSYIAKYGTPYALS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           EL +HN +         +E            G+P+       L  +S LS++   + G G
Sbjct: 183 ELSQHNCLIGSQSHWHFVEQ-----------GKPKTVKVHGSLACSSGLSLLNAAICGLG 231

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           I  LP Y V D      LV ++     P   ++  YP
Sbjct: 232 IVQLPGYYVNDAIAEGLLVVLLAPFQQPKEGIWALYP 268


>gi|311695639|gb|ADP98512.1| transcriptional regulator, LysR family protein [marine bacterium
           HP15]
          Length = 298

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 141/287 (49%), Gaps = 24/287 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA  GSFT AA+ L ++ +++S+ I+ LE ++  +L  R  R + LT+ G    
Sbjct: 9   MNIFRRVAELGSFTRAADDLEITAATVSKHIAFLERDLDTRLINRTTRRMNLTDAGFAFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T  +  +LE  ++E +    +P G +R+   +  G   +   +  FL  +P+I I L 
Sbjct: 69  KRTQALLDELEDAELEARGFQAEPKGTIRLNVPMSFGLTHISEAIDSFLNRFPEIDIDLQ 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+     D AIR+R  +  SSL+ R L        A+P YLK+  E  +  +L 
Sbjct: 129 LSDRMVDLVEQGVDIAIRVRSSLADSSLMARPLRKSRNIVCASPEYLKDVPEVHAPSDLA 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRI---SCLQVNSYLSIMQYCVLGSG 240
            HN +TF                 DRP    +G+  +      + +S L+I Q  + G+G
Sbjct: 189 GHNCLTF--------------TLHDRPRVWKLGDQEVMVSGNFRTDSSLAIRQSLLSGAG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           I  LP ++V+++    +L+ ++ D     +TV+  +P   K   K++
Sbjct: 235 IGYLPRFLVQEDIESGSLIPLLPDYPPEPYTVFALFPPGRKQPTKVR 281


>gi|86135842|ref|ZP_01054421.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85826716|gb|EAQ46912.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 295

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 138/290 (47%), Gaps = 15/290 (5%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL V   F  +   GSF  AAE L +S + +SR+I  LE  +G  L  R  R ++LT+ 
Sbjct: 2   DKLSVMNAFRRIVERGSFARAAEDLRVSPALLSREIKLLEESLGTVLLTRTTRSMSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   S +   +   +  +++ + +  G L++  +   GQ ++   L      YPD+
Sbjct: 62  GQLFYDEASGILDAVFQVETRIRDGAGEIRGHLKVNASSSFGQTVIAPILPGLFDAYPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L LD++ ID+     D +IR+R  +  S+L+ RKL       +AAP YL++   P  
Sbjct: 122 RLTLSLDDRVIDMVEGGFDVSIRIRAAMPDSALVARKLGRTRQQVFAAPSYLESVGAPQK 181

Query: 183 IQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            Q++  H +I F     L    +   +   TVD    +P I   +V + L +    + G 
Sbjct: 182 PQDVVNHRVIGFLLADHLSAWTLHSPSETVTVDL---DPPI---RVGNSLVLRDLLIAGQ 235

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GI  LPD++ KD      LVR++ D   P+  +Y      L    K+ AF
Sbjct: 236 GIGTLPDFVSKDAVARGELVRVLPDWELPAPEIYAVTASRLGMDAKVTAF 285


>gi|169796372|ref|YP_001714165.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213156892|ref|YP_002318937.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483833|ref|YP_002326058.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301347052|ref|ZP_07227793.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301512725|ref|ZP_07237962.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301596705|ref|ZP_07241713.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332851972|ref|ZP_08433839.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332871703|ref|ZP_08440163.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149299|emb|CAM87182.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|213056052|gb|ACJ40954.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986037|gb|ACJ56336.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332729549|gb|EGJ60887.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332731271|gb|EGJ62568.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 303

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 146/280 (52%), Gaps = 11/280 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEDQLGVALFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGALFYEHSRRALSEIQNAAALLDQRKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++++D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRNVDLIEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNKAGPV 180

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             I++LD+H  I    FG      M+ +      D P+     + L +N   +I    + 
Sbjct: 181 EHIEDLDQHATIADPHFGQ-----MQKWRLQKENDEPLFIKPKAKLLLNDLQAIKNAALA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            +GIA LPD+++++   +  LV++++ + + +F ++  +P
Sbjct: 236 DAGIAWLPDWLIQNELQDGKLVQVLDAMSSTAFPIHLVWP 275


>gi|224825984|ref|ZP_03699087.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224601621|gb|EEG07801.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 295

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 142/305 (46%), Gaps = 31/305 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           +RVF+ VA  GSFT A+++L LS+   S+ +S LE  +G +L  R  R L LTE G+  L
Sbjct: 4   MRVFHAVADGGSFTLASDKLGLSRGMASKYVSWLEEHLGTRLLNRTTRRLALTESGADYL 63

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV S +  +++  + +  E+S +P G LR++  +  G   L   L EF   YP + + L
Sbjct: 64  ARVAS-ILAQVDEAEAQAAETSREPVGTLRVSAPLAFGVRRLGPILAEFNAHYPRLTVDL 122

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+++  D+  D  D  +R+   +  S L+ R L  + +   AAP YL     P +  EL
Sbjct: 123 LLEDRQRDMLEDGVDLTLRITTDLGQSQLVARALAPVRVVVCAAPAYLARHGTPATPAEL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--------LQVNSYLSIMQYCVLG 238
            +H  + +               T+  P+ E R           L  N+   ++     G
Sbjct: 183 ARHRCLRY---------------TLSEPVDEWRFGSERVKVSGPLAANNGDLLVDAARHG 227

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FL 292
            GI   P +++ D+     LV ++E    P F +Y  YP       K++A  +F+   F 
Sbjct: 228 MGIICEPTFLLGDDLKSGRLVPLLEGYPLPEFRLYALYPHRQYLPRKVRALVDFLADHFA 287

Query: 293 KARDW 297
              DW
Sbjct: 288 GEPDW 292


>gi|167583998|ref|ZP_02376386.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 296

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 142/295 (48%), Gaps = 16/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELGDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEAALGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   L   + EFL  +P +
Sbjct: 61  GHEFYERAQRILAEVADAEQAMVARSTELHGSLKISAPLSFGITHLSPLIAEFLAAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D A+R+  P++ S+LI R L    M A  +P YL+    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDVALRI-GPLEDSTLIARPLGQSRMIACCSPAYLRRRGAPAA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
             +L +H  + +G           W   VD   G  R   +Q     N+   +    + G
Sbjct: 180 PADLGEHVCLLYGR-----ERRVGWEFRVD---GAARTFDVQGPLVANNGEVVRDAAIAG 231

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLP +IV    D+  LV +++    P+  +   +P+  +    L+ F  F+
Sbjct: 232 LGIALLPHFIVGAALDSGALVPVLDGYAPPALQLNAIFPQHREGFVTLRTFVAFL 286


>gi|110678302|ref|YP_681309.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109454418|gb|ABG30623.1| transcriptional regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 302

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 140/293 (47%), Gaps = 18/293 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F +V   G FT AA++L +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 7   EMEAFAMVVDQGGFTDAAKKLGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L EFL  +PDI + +
Sbjct: 67  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSEFLSDFPDITVNM 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P  I +L
Sbjct: 127 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPGYFEKYGRPEKIDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 186 NAHKLLHYSNQSSGNV----WKITA--PSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  +      ++ED I P        +Y  YP       K++AF +F+
Sbjct: 240 YLPSFLYAEAME-KGLVEDAI-PDLPMEMQGIYAVYPPGRFTQPKVRAFIDFL 290


>gi|307945395|ref|ZP_07660731.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307771268|gb|EFO30493.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 293

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 8/261 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +RVF  VAR+G    A  +L L+ ++++R+++ LE ++ +KLF R   G  LT++
Sbjct: 1   MNWDDVRVFLSVARTGQILAAGRRLGLNHATVARRLTSLEEDLSVKLFERSTSGCVLTDK 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+       +  ++   + E+ +  V  SG +RI      G   L   L +    +PD+
Sbjct: 61  GSRFLPRAEAIEAEMLAAEAEIADDEVSISGTVRIGAPDGFGVAFLAPRLGQLTEKHPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL+   +   +S   AD AI + +P +   LI RKL    +  YA+  YL  C  P +
Sbjct: 121 TVQLVPVPRSFSLSRREADIAITVERP-EHGRLIARKLTDYSLGLYASSSYLDTCPPPET 179

Query: 183 IQELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++L  H+LI    DLI    +  N+ A   +       +  ++ S L   +    G+GI
Sbjct: 180 LKDLKDHSLIGAVEDLI--YSQALNYAADFAKDWS----ARFEIASALGQTEAVRAGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDV 262
            +L  +I + +P+LVR++ D+
Sbjct: 234 GVLHSFIARSDPDLVRLLPDI 254


>gi|238786633|ref|ZP_04630434.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC
           33641]
 gi|238725001|gb|EEQ16640.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC
           33641]
          Length = 302

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 136/291 (46%), Gaps = 18/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA  GSFT AA    L +SS+S++IS LE  +GI+L  R  R L LT  G +  
Sbjct: 8   MALFAKVAECGSFTRAATMAGLPKSSVSQRISQLEQNLGIRLLNRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ ++++
Sbjct: 68  VHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLAADFQRQYPDVLLEVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  D  D A+R  KP Q SSLI R+L     +  A+P YL      L  ++LD
Sbjct: 128 VSDTMVDLVEDGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLLHPRQLD 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLG-SGIAL 243
            H          +C+    W A + R   E    ++  L V   L   + C L   GI L
Sbjct: 187 IH----------RCIAHRAWQALILRRNEEFYRWQVPVLHVTDNLLYARECALNHGGITL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LP ++ ++   N  L+ ++         +Y  YP    N+  L  F + + 
Sbjct: 237 LPAFLSREVVANGQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVVM 287


>gi|187920095|ref|YP_001889126.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718533|gb|ACD19756.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 295

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 145/289 (50%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F     + +FT AA +L LS+  +SR++  LE  +G++L  R+ R L +T+ G +
Sbjct: 4   DDMRIFVATVDAHNFTAAANRLSLSKQFVSRRVMALEETLGVQLLIRNTRKLAVTDLGQE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++E  +  +      P G LR++  +  G   L   +  FL  + D++ +
Sbjct: 64  FYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMAHLSPLVAMFLREHGDVRFE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D AIR+   +  S+LI +KLV I M A  +P Y++    P    +
Sbjct: 124 MELSDRTVDVVGEGFDMAIRI-GSLPDSTLIGQKLVDIRMVACCSPGYVRRRGAPKVPGD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L++H+ + +G          +W   VD       +   L+ N+   +    V G GI  L
Sbjct: 183 LERHSCLLYGH-----GGAVSWEFVVDGVTKGVEVHGPLRANNGELVRDAAVAGLGIVRL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD+IV D   +  LV ++E  +  + +VY  YP+  +++  ++AF  F+
Sbjct: 238 PDFIVADALKSGQLVPVLEAFLPSATSVYAVYPQHRQSSLTIRAFVEFL 286


>gi|134293800|ref|YP_001117536.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136957|gb|ABO58071.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 298

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 132/289 (45%), Gaps = 14/289 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +F  +A SGS +  A  L   +SS+SR +  LETE+G  LF R  R   LT+ 
Sbjct: 1   MDQADLIIFLRLADSGSLSGTARTLKSPKSSVSRALVRLETEIGSALFDRSTRHFRLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    S   H L+  Q  +   + +P G LRI TT    Q L+   L EFL  YP +
Sbjct: 61  GKLLLPYASRAVHDLQEAQAIIDGYAGEPRGLLRINTTQSFAQGLVAPMLPEFLDRYPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L  D+  +DI+ +  D A+R+   +  SSL+ R+L  + +   A+P YL     P++
Sbjct: 121 TVELTTDSNYVDIAREGIDVAVRVGT-LPDSSLVARRLPPVELWLCASPSYLSRSGAPMA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GSG 240
             EL  H L+          +D     T+      PR S +  +   +  Q  VL  G G
Sbjct: 180 ASELHGHRLVVREAPTSWVFQDGQAELTI-----RPRGSAIIPD---AAAQKIVLEGGGG 231

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  LP Y+         LVR++  +      ++  YP     + K++ F
Sbjct: 232 IGFLPSYLAAPALRAGTLVRVLPSLRREPIELHALYPTHRSMSAKVRVF 280


>gi|217971578|ref|YP_002356329.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217496713|gb|ACK44906.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 298

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 135/277 (48%), Gaps = 13/277 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A+++L LS+S++S++I+ LE  +GI+L  R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLRRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +            E     + E    P G LR A  +  G+  +   + EFL  YP IQ+
Sbjct: 64  RYFDYVRPAVKLAEEGLDAISELQQAPQGNLRFAVPMVFGRLYIAPLIPEFLRRYPKIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P + Q
Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLARHAAPQTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           +L +HN + +        +   W  T   P G  RI      QVN+  +I Q  + G GI
Sbjct: 183 QLSQHNCLFYSYF----RDGVEW--TFLSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGI 236

Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275
           A LP ++V  +    R   ++ D   P   +Y  YP+
Sbjct: 237 ANLPRFMVDTDLQTGRLQALLADHPLPEHGIYTVYPQ 273


>gi|170732678|ref|YP_001764625.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169815920|gb|ACA90503.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 307

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 133/303 (43%), Gaps = 12/303 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W ++  F  VA  GS + AAE+L +S ++ SR ++ LE  +G +L  R  R L LT+ G 
Sbjct: 4   WTQIEFFVQVAELGSLSKAAERLGMSSAAASRCLTALEERLGARLVERTTRRLWLTDAGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + HR    +  +L      + E+SV P+G LR+  ++      +   L EF   YP++ +
Sbjct: 64  EYHRRCVAILTELSEADAAVNEASVNPAGTLRVTASVSFASIYIAPALPEFHRRYPNLNV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  N+  D      D AIR R+    S +  RKL        A+P YL     P +  
Sbjct: 124 QIVAANRYPDFIEAGIDVAIRTREHEADSGITVRKLAETRRVLAASPGYLAKHGAPATPD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H L+ +       +  F   A       +   S L  N    I    + G GI + 
Sbjct: 184 ALGEHRLLVYNLANDPYVLHFRHGAKKQSVTIK---SVLDANEGQVIRVAALAGLGILIQ 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK------AR 295
           P YI+ D+     LV ++ D   P+ TV   Y        K++ F  F+  +      AR
Sbjct: 241 PLYIIHDDIVAGKLVPVLTDWQLPALTVNIAYQSRRHQPAKIRVFTEFLIERFERLGLAR 300

Query: 296 DWK 298
            WK
Sbjct: 301 KWK 303


>gi|126172616|ref|YP_001048765.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125995821|gb|ABN59896.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 298

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 137/277 (49%), Gaps = 13/277 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A+++L LS+S++S++I+ LE  +GI+L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +                  + E    P G LRIA  +  G+  +   + EFL  YP IQ+
Sbjct: 64  RYFDYVRPAVKLAADGLDAISELQQAPQGSLRIAVPMVFGRLYIAPLIPEFLRRYPKIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P + Q
Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLARHTVPHTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           +L +HN + +        +   W  T   P G  RI      QVN+  +I Q  + G GI
Sbjct: 183 QLSQHNCLFYSYF----RDGVEW--TFLSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGI 236

Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275
           A LP ++V+ +    R   ++ D   P   +Y  YP+
Sbjct: 237 ANLPHFMVEADLQTGRLQALLTDHPLPEHGIYAVYPQ 273


>gi|87122067|ref|ZP_01077951.1| putative transcription regulator protein [Marinomonas sp. MED121]
 gi|86162614|gb|EAQ63895.1| putative transcription regulator protein [Marinomonas sp. MED121]
          Length = 299

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 150/291 (51%), Gaps = 10/291 (3%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V  + SF+ AA QL +++S++S+QI  LE EVG++L  R  R L+LTE 
Sbjct: 2   DELRRIGVFTRVVETKSFSEAARQLGVAKSAVSKQIVQLEKEVGVRLLNRTTRSLSLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R ++E+ ++ +    EL+E   +P+G LRI+  +  G   L   +KE   LYP +
Sbjct: 62  GEIFYRHSAEIVNRTKIALSELKEYQNQPTGTLRISCPVSFGTEHLIPVIKEVRALYPLL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+++ I++  +  D AIR+   +Q S+L+ + +    +  +A+P YL     P +
Sbjct: 122 KIDLLLEDRIINMVEEGVDLAIRIGW-LQESNLVAKLVCETPVSVFASPEYLAQKGTPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L KH+ I+          +F       +       S L+ NS  +++     G GI+
Sbjct: 181 PQDLQKHDWISLSLFSSPLTWEFE---KKGQKQSVQMHSQLKSNSVAAVIALSKSGQGIS 237

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  + ++++     L  ++ D       +Y  YP       K++ F +F+
Sbjct: 238 ALTKFCLQNDFEKGLLQPLLTDYKLKPSGIYAVYPHREHVPPKVRIFIDFL 288


>gi|317406095|gb|EFV86358.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 312

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 146/299 (48%), Gaps = 23/299 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AA+ LH+S++S+++ +  LE  + ++L  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  ++  P G+LR+     L + +L   L  F   YPDIQ+
Sbjct: 64  VYYERVLRLLADMDDAETSLSSAAAVPRGRLRVDVPSPLARMILVPALPAFHARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R  + +   SL+ R++  + +  YAAP YL+    P   +
Sbjct: 124 DMGVSDRIVDVIGENVDCVVRGGE-LTDQSLMARRVGDLQLRVYAAPAYLQRAGAPGHPR 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPI---GEPRISCLQVNSYLSIMQY 234
           +L+   H ++ F     G  +P  M         D  I   G   ++    N+YL+    
Sbjct: 183 DLEDSHHRIVGFLWSRSGKPLPYAMH------RGDESIHAHGRYVVAVDDGNAYLAA--- 233

Query: 235 CVLGSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G GI  LPDY+ +D+     LV + ED    S  +Y  +P     + KL+ F +++
Sbjct: 234 GLAGMGILWLPDYMARDHAARGELVPVFEDWRLDSMPLYIAFPPNRHVSAKLRVFIDWV 292


>gi|218662125|ref|ZP_03518055.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 308

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 144/300 (48%), Gaps = 15/300 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 11  DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVMLIQRTTRKLSLTAQG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  + LGQ +    + +FL  YP+IQ
Sbjct: 71  RAYYDRCSEPLAHLIDAEQALTETQRKPEGLLKISVPVILGQEVFYEFISDFLKAYPEIQ 130

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L + N  +D+  +  D  IR  + ++ S+++ ++L     +  AAP YLK    P   
Sbjct: 131 VDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPDYLKEKALPAKP 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +    L+     +  W     R   + R+S       + ++  +   G GI 
Sbjct: 190 EDLKDHRCV----LLNGRNGEAEWHLVSGRKSADVRVSGPASSRDFDAVSAFTYRGHGIG 245

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298
           LLP     +      L+R++ D  +P   V+  YP     T +    R  +FL A + WK
Sbjct: 246 LLPSTYCDEQIRRGALIRLLPDWSSPEIFVHAVYP-----TRRFLPLRLQVFLDALKAWK 300


>gi|238790140|ref|ZP_04633917.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           frederiksenii ATCC 33641]
 gi|238721809|gb|EEQ13472.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           frederiksenii ATCC 33641]
          Length = 300

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 153/298 (51%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V   GSF+ AAEQL  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTVKRLEGKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +   + T + EL +S + P G LRI  +  +  ++L   + EF   YP
Sbjct: 61  QEGEHYFRRVQNILRDMATAENELLDSQLNPKGLLRIDASTPVVLHVLAPLMAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  RKL+T + H  A+P YL+    P
Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRV-GTLQDSTLRARKLMTSYRHLLASPAYLRQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L  H  + F DL P       W LA  D  + E   S L  N+  +  + C+ G+
Sbjct: 180 QTVADLQHHVCLGFIDL-PVLNR---WPLAGPDGQLYEI-TSDLTSNNGETQRRLCLEGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++++ +    +LV I+E+    V  P   VY+   +A+ N  +L+ F +FI
Sbjct: 235 GIACLSDFMIQQDLQRGDLVPILEEHTLPVAMPINAVYYS-DQAVSN--RLRCFIDFI 289


>gi|107028302|ref|YP_625397.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686296|ref|YP_839543.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897466|gb|ABF80424.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652011|gb|ABK12650.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 305

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 137/293 (46%), Gaps = 12/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE  +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARSTGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTISEKAGEIYRQAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +     AAP YL+    P   
Sbjct: 126 IDLHLSDASVDLIADGFDAALRIAA-LPDSSLVARRLCAVTQFVVAAPEYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240
            EL     + +       +  F   A  +    P G      L+V +  +++   + G  
Sbjct: 185 LELADRPCLPYAYRARSAVWRFTNDAGDEESVMPTGP-----LRVTNADALLPTLLDGLA 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP++I  +   +  L  I+ D    +  +YF  P A     K+ A  ++ 
Sbjct: 240 IAELPEFIAGEYLADGRLEAILPDWSLTTGGLYFVTPSARARPAKVTALSDYF 292


>gi|145301024|ref|YP_001143865.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853796|gb|ABO92117.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 301

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 144/299 (48%), Gaps = 15/299 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA  G FT AA +L +S + +SRQ++ LE  +  KL  R  R + LTE 
Sbjct: 2   LGWEGICEFVSVAEQGGFTPAARKLGVSVAQVSRQVAQLEDRLQAKLLLRTTRQVRLTEL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R   ++   L   ++ +      P G LRI   +  G++ +   + +F++ +P +
Sbjct: 62  GEIYYRHCRQLLDNLYEAELAVGRHQAVPQGSLRITAPVSYGESRIAPLVNDFMVRFPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L N+ +D+  +  D AIRL   ++ SSL+ RKL     +  A+P Y      P S
Sbjct: 122 EVTLNLTNQLLDLVHEGYDLAIRLGH-LKDSSLVARKLAQRVPYVCASPAYTARHGMPNS 180

Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + EL +H  L+  GD          W  T+D RP        LQ NS  +++   + G G
Sbjct: 181 LSELTRHTCLVGNGD---------EWYFTLDGRPHSVRVHGLLQCNSGHALLDAALKGIG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  LPDY V D+     L+ ++ ++  P   ++  YP     + K++   +++  +  D
Sbjct: 232 IIQLPDYYVSDHLARGELIELLPELRAPEEGIWALYPHNRHLSPKVRLLVDYLAERLSD 290


>gi|327480535|gb|AEA83845.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 297

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 16/293 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  VAR+G  T AA +L +  +++SR++  LE  +G++LF R   G  LTE 
Sbjct: 1   MDWDNLRYFLEVARAGRLTTAARRLAVDHTTVSRRLQALEKSIGLQLFLREPGGYKLTEA 60

Query: 63  GSK-LHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           G   L RV +     +E+  + ++ S        SG++RI  T   G  +L G L     
Sbjct: 61  GRNLLPRVEA-----MESASVAIEHSLPSMGDGLSGQVRIGATEGYGTVMLAGQLTGLSR 115

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP + I L+   + + +S   AD  I L +P +   +I R L    +  YA+P YL   
Sbjct: 116 RYPHLNIDLLALPRAVRLSRHEADIVITLERPERGPFIITR-LTDYVLRLYASPAYLDEH 174

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               S ++L +H  +++ D +    E    L  +D  I +PR   L+  S L+  +   +
Sbjct: 175 PPIRSREDLAEHRFVSYVDDLLFSKE----LLFLD-GIADPRSVGLRSTSLLAQQEAVAM 229

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GIA+LP +    +P L  ++ + ++ + T +   P   K+  +++   +++
Sbjct: 230 GAGIAILPAFSADADPRLRLLLPEEVSFTRTFWMLMPIEFKDLARMRTTWDYL 282


>gi|146310405|ref|YP_001175479.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145317281|gb|ABP59428.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 300

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 147/299 (49%), Gaps = 19/299 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AA QL  + S+ISR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELVIFVAVVESGSFSRAAVQLGQANSAISRSVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAETEIIETRSTPRGLLRIDAATPVVLHFLLPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EVSLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKMIASPSYIARYGNP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPR--ISCLQVNSYLSIMQYCVL 237
            ++ +L +H  + F +  P  +    W +A  D   G+P   IS L  NS  ++ Q C+ 
Sbjct: 180 TNVDDLKRHVCLGFTE--PVSLN--TWPIAGSD---GQPHEIISGLSSNSGETLKQLCLS 232

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GIA L DY++    +  +LV I+ D   P    F+  +    A+    +++AF +F+
Sbjct: 233 GNGIACLSDYMINKELEKGDLVEILADQRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|330958541|gb|EGH58801.1| LysR protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 306

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 142/297 (47%), Gaps = 17/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AA  LH+S++S+++ I  LE  + +KL  R  R + LT  G+
Sbjct: 4   FDAMQAFAQVVETGSFTKAAGTLHMSKTSVTQLIQQLEARLRVKLLNRTTRRVNLTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  ++  P G+LR+     +   LL   L  F   YPDIQI
Sbjct: 64  VYYERVVSLLADMDDAETSLSSAASLPRGRLRVDVPSPMASLLLMPALPAFHARYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  ++ DC +R  + I   SL+ R++  + +  YAAP YL     P    
Sbjct: 124 DMGVSDRIVDLIGEHVDCVVRGGE-ITDQSLMARRVGDLQLGVYAAPDYLLRMGTPTHPH 182

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ +     G  +P  M        V    G   ++    N+Y++     + 
Sbjct: 183 ELEDSAHRVVGYLWARTGKALPYAMRRDGEQVHVQ---GRYTLAVDDGNAYIAA---GLA 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G GI  LPDY+ +    N  LVR+ +D    S  +Y  +P     + K++ F ++I 
Sbjct: 237 GMGILWLPDYMARTHLQNGTLVRLFDDWRLDSMPMYVAFPPNRHVSLKVRVFIDWIM 293


>gi|255263293|ref|ZP_05342635.1| LysR substrate binding domain protein [Thalassiobium sp. R2A62]
 gi|255105628|gb|EET48302.1| LysR substrate binding domain protein [Thalassiobium sp. R2A62]
          Length = 301

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 138/291 (47%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L EFL  + DI + +
Sbjct: 66  YDRARRVLNDAGEADSLVTSMQSAPSGLLRISVATDFGVNHLSPTLGEFLNEFQDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+ + ++ S+L  RKL        A+P Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETTRRMVASPEYFEQYGRPEKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ + +     +    W  T   P GE R       L VN   S++     G GIA
Sbjct: 185 NEHKLLHYSNQSNGAV----WKLTA--PSGEKRQVRTAGWLTVNDGQSLLNAATSGLGIA 238

Query: 243 LLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  D     LV   + D+   +  +Y  YP       K++AF +F+
Sbjct: 239 YLPSFLYADALEQGLVEEAIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|330954094|gb|EGH54354.1| LysR protein [Pseudomonas syringae Cit 7]
          Length = 311

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 143/296 (48%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + +KL  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAASTLHMSKTSVTQLVQQLEARLRVKLLNRTTRRVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  ++  P G+LR+     L   LL   L  F   YPDIQI
Sbjct: 64  VFYERVVRLLADMDDAETSLSSATSLPRGRLRVDVPSPLASMLLMPALPGFHARYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R  + I   SL+ R++  + +  YAAP YL+    P+  Q
Sbjct: 124 DMGVSDRMVDLIGENVDCVVRGGE-IADQSLMARRVGDLQLGVYAAPDYLQRMGTPVHPQ 182

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ +     G  +P  M        V    G   ++    N+Y++     + 
Sbjct: 183 ELEDSAHRIVGYLWAGTGKALPYAMHRAGEKVHVQ---GRYTLAVDDGNAYVAA---GLA 236

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LPDY+    ++   LV + ED    S  +Y  +P     + K++ F ++I
Sbjct: 237 GMGILWLPDYMARPYRERGALVPLFEDWQLDSMPMYVAFPPNRHISIKVRVFIDWI 292


>gi|157147196|ref|YP_001454515.1| hypothetical protein CKO_02975 [Citrobacter koseri ATCC BAA-895]
 gi|157084401|gb|ABV14079.1| hypothetical protein CKO_02975 [Citrobacter koseri ATCC BAA-895]
          Length = 304

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELVIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +   +   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQDMAAAETEVMETRSTPRGLLRIDAATPVILHFLMPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I+EL +H  + F +  P  +    W +A  D  + E   S L  NS  ++ Q C+ G+
Sbjct: 180 ETIEELKQHLCLGFTE--PASLN--TWPVACSDGQLHEIS-SGLSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D   P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|161519920|ref|YP_001583347.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353903|ref|YP_001949530.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221200900|ref|ZP_03573941.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
 gi|221207095|ref|ZP_03580106.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221210235|ref|ZP_03583215.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
 gi|160343970|gb|ABX17055.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337925|dbj|BAG46994.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221169191|gb|EEE01658.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
 gi|221173169|gb|EEE05605.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221179472|gb|EEE11878.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
          Length = 334

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 148/289 (51%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLR+     +G+ L+  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQNNNRKPHGKLRVDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++      + AAP YL+   EP +I++L 
Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFEGVSVAAPAYLEKYGEPQTIEDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +     +     +W   +D    E +++ +  VN   + +   + G G+   P 
Sbjct: 186 QHKAVNY--FSSRTGRTIDWSFLIDGKEVEVKMNGIVSVNDADAYVTCGLEGFGLIQPPL 243

Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
           ++V  +    R+ E  + P F      +   YP +   + K++ F +++
Sbjct: 244 FMVLPHLREGRLKE--VLPGFKPLPMPISVVYPHSRHLSPKVRVFVDWV 290


>gi|90022419|ref|YP_528246.1| LysR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952019|gb|ABD82034.1| LysR, substrate-binding [Saccharophagus degradans 2-40]
          Length = 298

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 133/282 (47%), Gaps = 14/282 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SFT AA+ L  + +++S+ I+ LE ++G +L +R  R L L++ G    
Sbjct: 9   MKIFRRVAELKSFTLAADDLDTTPATVSKHIAFLERDLGTRLIHRTTRRLNLSDAGLTFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T E+   LE  ++E Q     P G +R+   +  G   L   +  FL  YPDI I L 
Sbjct: 69  KRTQELLDALEEAELEAQGYQTSPKGSIRLNVPMSFGLTHLTEAVDSFLRRYPDIDIDLQ 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+     D AIR+R  +  SSL  R L        AAP YL    E     +L 
Sbjct: 129 FSDRLVDLVEQGVDLAIRVRHSLADSSLQARALKQSRNVVCAAPSYLAQNPEIRCPDDLV 188

Query: 188 KHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            HN  L T  D  PK  E  N    V            + +S L+I +  + G+GI  +P
Sbjct: 189 HHNCLLYTLHDR-PKVWELGNQEVIVG--------GNFRTDSSLAIRECLIAGAGIGFIP 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            ++V+   +N  LV ++ D     +TV+  +P   K   K++
Sbjct: 240 RFLVENDLENQKLVPLLTDFPAKPYTVFALFPPGRKQPAKVR 281


>gi|146282290|ref|YP_001172443.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145570495|gb|ABP79601.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501]
          Length = 296

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 16/293 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  VAR+G  T AA +L +  +++SR++  LE  +G++LF R   G  LTE 
Sbjct: 1   MDWDNLRYFLEVARAGRLTTAARRLAVDHTTVSRRLQALEKSIGLQLFLREPGGYKLTEA 60

Query: 63  GSK-LHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           G   L RV +     +E+  + ++ S        SG++RI  T   G  +L G L     
Sbjct: 61  GRNLLPRVEA-----MESASVAIEHSLPSMGDGLSGQVRIGATEGYGTVMLAGQLTGLSR 115

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP + I L+   + + +S   AD  I L +P +   +I R L    +  YA+P YL   
Sbjct: 116 RYPHLNIDLLALPRAVRLSRHEADIVITLERPERGPFIITR-LTDYVLRLYASPAYLDEH 174

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               S ++L +H  +++ D +    E    L  +D  I +PR   L+  S L+  +   +
Sbjct: 175 PPIRSREDLAEHRFVSYVDDLLFSKE----LLFLD-GIADPRSVGLRSTSLLAQQEAVAM 229

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GIA+LP +    +P L  ++ + ++ + T +   P   K+  +++   +++
Sbjct: 230 GAGIAILPAFSADADPRLRLLLPEEVSFTRTFWMLMPIEFKDLARMRTTWDYL 282


>gi|288962557|ref|YP_003452852.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914823|dbj|BAI76308.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 301

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 147/292 (50%), Gaps = 15/292 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ LR F  VAR+G+ T AA++L    S++SR+I+ LE  + + LF R   G TLT Q
Sbjct: 4   FNWNDLRFFLAVARAGTLTTAAQRLRADHSTVSRRITALEDALRVTLFERRPSGFTLTPQ 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +    +       Q  + +  +  +G +RI      G + L   +      +P++
Sbjct: 64  GERLKQTAEVMESAAFLAQGMVADGDLALAGAVRIGAPDGFGSSFLAPRIGALCERHPEL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL- 181
           ++QL+   +   +S   AD AI L +P Q   L  RKL    +  Y    YL+  R P+ 
Sbjct: 124 EVQLVAMPRVFSLSKREADIAISLSRP-QEGRLYARKLTDYRLGLYGTRAYLE-ARPPIH 181

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLG 238
              +L  H+ I +  DLI     + +++ T    IGE  PRI   + +S ++ ++  + G
Sbjct: 182 GRADLRGHSFIGYIDDLI--FAPELDYVET----IGEVAPRI---KSSSLVAQLKATLAG 232

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +G+ +LP +I +  P+L+ ++   +T + + +    E L++  ++    ++I
Sbjct: 233 AGLCMLPAFIAQGEPDLLPVLAAEVTITRSFWLIVHEDLRSLARISMTADYI 284


>gi|56460872|ref|YP_156153.1| LysR family transcriptional regulator [Idiomarina loihiensis L2TR]
 gi|56179882|gb|AAV82604.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR]
          Length = 303

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +  F  VA   SFT AA QL LS + +SR I+ LE  + ++L YR  R ++LTE+G 
Sbjct: 4   WQGISEFAAVAEQQSFTAAARQLRLSVAQVSRNIAALEHRLQMQLLYRSTRSVSLTEEGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L      +Q+ + +P G +RI   +  G+  +   L +FL +YP+ ++
Sbjct: 64  LYLPHCQHLVASLRDADQAIQQRTQQPQGLIRITAPVYYGERFIAPLLNDFLHIYPECRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+ +D+     D AIRL + + +  L  RKL +       +P Y +    P  I 
Sbjct: 124 DFQLTNEQVDLIEGSYDVAIRLGQ-LGNPRLRARKLGSRRHFVVGSPAYFEEFGRPQDIN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            LD H   T G +     +    L TV RP      S L  N+ L++    + G G+A+L
Sbjct: 183 ALDAHRCFT-GTVRQWRFQVEGKLETV-RP-----ESYLHCNNGLALRDAAMKGLGLAML 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V D   N  L  ++ D   P   ++  YPE  +   K++   +++
Sbjct: 236 PDYYVTDSLANGQLEEVLADYRQPDDGIWALYPENRQVIPKVRVLLDYL 284


>gi|187924383|ref|YP_001896025.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715577|gb|ACD16801.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 345

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 143/289 (49%), Gaps = 15/289 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSF  A E+L + +S++SR +  LET++  +LF R  R   LT +G +    
Sbjct: 35  AFMAVASEGSFAKAGERLGVGRSAVSRNVQKLETQLSTRLFLRTTRSTQLTREGQRFFEN 94

Query: 70  TSE-VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             + V H +E     L+     P G +RI++T+  G+ ++   L++F+  YPDI + L+L
Sbjct: 95  CHQGVSHLVEAMNDMLELREGPPRGLVRISSTVGFGRKVVGPLLEQFVKAYPDIAVDLLL 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++ +D + +  D A R  + I+ SS+I ++L+ + M   AAP Y+     P ++ EL +
Sbjct: 155 DDRPMDFASEQIDVAFRSGR-IEDSSIIAKQLIPMQMALCAAPSYVAAHGLPQTLDELCQ 213

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIALL 244
           H+ I F     +    F W   VD   G  R     + L +N    ++   + GSGIA +
Sbjct: 214 HDCINFRLSSGRV---FEWEFKVD---GHVRKYLPTARLTLNDADLVLHAVLQGSGIAQM 267

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y ++D+     LV  +   +      Y CY        +++ F +F+
Sbjct: 268 AGYQIRDHIAANELVVALARHVPDDGGHYICYLSRRHLPTRIRVFIDFM 316


>gi|209694640|ref|YP_002262568.1| transcriptional regulator AphB [Aliivibrio salmonicida LFI1238]
 gi|208008591|emb|CAQ78766.1| transcriptional regulator AphB [Aliivibrio salmonicida LFI1238]
          Length = 291

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 141/288 (48%), Gaps = 9/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V  +GS+T A+ +  +  ++I+R+I  LE  + I+L  RHAR L+LTE G K
Sbjct: 4   DDLNLFRQVVDNGSYTAASRKTLIPVATITRRIQALEDSLDIRLLNRHARKLSLTESGQK 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S +   L      L E     +GKL IA   +L + ++Q  L +F+L+YP+I I 
Sbjct: 64  FYDECSPILSNLVNISEYLSEECRGAAGKLNIAAPSNLTKRMIQPILNQFMLIYPNININ 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + N+   +     D   R+ K  + SSLI R++ ++     A+P YL+   EP   QE
Sbjct: 124 LTMSNQPEQLDPTDWDIIFRVGKQ-RDSSLIARQIGSLEDILVASPIYLEQRSEPTHAQE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+L+    L+   + +    +      G    S L V     I   C  G GI L+P
Sbjct: 183 LHDHSLLKGHPLMRWRLTNIEGESVTITDAGRFEASELNV-----IRMACSDGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D ++    ++ +LVR+++D       +Y  Y        K++ F +F+
Sbjct: 238 DIMISKYLEDGSLVRVLKDWSANPRDIYMIYNYKDHQPEKVRLFIDFV 285


>gi|204926793|ref|ZP_03217995.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323458|gb|EDZ08653.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 304

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 147/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            S+++L  H  + F +  P  +    W +A  D  + E  + C +  NS  ++ Q C+ G
Sbjct: 180 ESVEQLKLHLCLGFSE--PVSLN--TWPIACSDGQLHE--VECGISSNSGETLKQLCLNG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|92112889|ref|YP_572817.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91795979|gb|ABE58118.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 306

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 144/292 (49%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AA+ LH+S++S+++ +  LE  + ++L  R  R + +T  G+
Sbjct: 4   FDAMRAFARVVETGSFTKAADTLHMSRTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +  L  ++ +P G+LR+     L + +L   L EF   YPDIQ+
Sbjct: 64  AYYERVLRLLADLDDAETSLSGAASEPRGRLRVDVPSPLARMILIPALPEFHARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +DI  +  DC +R  + +   SL+ R++  + +  YA+P YL+    P    
Sbjct: 124 DLGVSDRMVDIIDEKVDCVVRGGE-LTDQSLMARRIGDLPLGVYASPSYLERAGSPAHPG 182

Query: 185 ELDK--HNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L+   H ++ F G    K         ++ +  G   +S    NSYL+     + G GI
Sbjct: 183 DLENTHHRVVGFLGSRFGKPFAMHRREESI-KVQGRYVLSTDDGNSYLAA---GLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY+ ++   +  LV + ED       +Y  YP     + KL+ F  +I
Sbjct: 239 LWLPDYMAREHLASGELVALFEDWRLDPMPLYLAYPPNRHVSAKLRVFIEWI 290


>gi|282599963|ref|ZP_05972517.2| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
 gi|282567011|gb|EFB72546.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
          Length = 330

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 149/306 (48%), Gaps = 14/306 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  D+  + +F  V   GS T AA+ LH+++S++S+++   ET+ GI+L  R  R L LT
Sbjct: 23  IDIDYSLIPIFITVVEQGSLTKAADTLHMTKSAVSKKLMAFETQTGIRLITRSTRHLQLT 82

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    + +  +   +  +   +    G L+I+  +  G   L   L EFL  +P
Sbjct: 83  EAGEIYYSWLKKAHETINDGREAIARYADTVDGILKISAPMIFGTLHLNKLLPEFLKRWP 142

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++ ++I D+K +D+  +  D AIR+ + +Q SSLI R L        A+P +L+    P
Sbjct: 143 QLRTEIIFDDKLVDLIGEGFDIAIRIGE-LQDSSLISRTLSPCRSVLCASPAWLEERGIP 201

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLG 238
            ++QEL +HN + +          F  L    R  P G  R      N+ LS+ Q  + G
Sbjct: 202 KNLQELAEHNCLLYSYFQAGQTWSFTHLGEKVRFTPKGNFR-----ANNSLSLHQAALQG 256

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FL 292
            G+  LP +IV  +     L+ ++ D   P   +Y  YP+      K+ AF +F+   F 
Sbjct: 257 LGVCQLPQFIVAPDILAGRLIPLLPDYHLPLHHIYAVYPDKEFLPKKVSAFLDFLQEKFY 316

Query: 293 KARDWK 298
           K+ D++
Sbjct: 317 KSSDYQ 322


>gi|238799160|ref|ZP_04642613.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           mollaretii ATCC 43969]
 gi|238717001|gb|EEQ08864.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           mollaretii ATCC 43969]
          Length = 300

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 151/300 (50%), Gaps = 21/300 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V   GSF+ AAEQL  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTVKKLENKLGVMLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +  ++ T + E+ ++ + P G LRI  +  +  ++L   + EF   YP
Sbjct: 61  QEGEHYFRRVQNILREMATAENEILDNLLNPKGLLRIDASTPVVLHILAPLMAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  RKL+T + H  A+P YLK    P
Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRV-GTLQDSTLRARKLLTSYRHILASPTYLKQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPR--ISCLQVNSYLSIMQYCVL 237
            ++ +L  H  + F DL P       W LA  D   G+P    S L  N+  +  + C+ 
Sbjct: 180 QTVADLRNHLCLGFNDL-PVLNR---WPLAGSD---GQPYEITSDLTSNNGETQRRLCLE 232

Query: 238 GSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GIA L D++++ +       P LV     V  P   VY+   +A+ N  +L+ F +FI
Sbjct: 233 GNGIACLSDFMIQQDLQRGDLIPILVEQTLPVAMPINAVYYS-DQAVSN--RLRCFIDFI 289


>gi|238762653|ref|ZP_04623622.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           kristensenii ATCC 33638]
 gi|238698958|gb|EEP91706.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           kristensenii ATCC 33638]
          Length = 305

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 151/298 (50%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V   GSF+ AAEQL  + S +SR I  LE ++G+ L  R  R ++LT
Sbjct: 4   MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTIKKLENKLGVTLLNRTTRQISLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +  ++ T + E+ ++ + P G LRI  +  +  +++   + EF   YP
Sbjct: 64  QEGENYFRRVQNILREMATAENEILDNQLNPKGLLRIDASTPVVLHIIAPLMAEFRQRYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  +KL+T + H  A+P YLK    P
Sbjct: 124 LVTLSLVSSETFINLIERKVDIAIRV-GSLQDSTLRAKKLMTSYRHILASPAYLKQNGTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  +L  H  + F DL P       W LA  D  + E   S L  N+  +  + C+ G+
Sbjct: 183 QTTADLQHHLCLGFNDL-PALNR---WPLAGADGQLYEIN-SDLTSNNGETQRRLCLEGN 237

Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++++ +    +L+ I+++    V  P   VY+   E    + +L+ F +FI
Sbjct: 238 GIACLSDFMIQQDLQRGDLIPILQEHTLPVAMPINAVYYSDQEV---SNRLRCFIDFI 292


>gi|299069520|emb|CBJ40789.1| putative transcription regulator protein, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 315

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 148/292 (50%), Gaps = 13/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T  G+  +
Sbjct: 7   MQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE T+    +S+    G LRI     +G+ LL   +++F   YPD+Q+++ 
Sbjct: 67  ERCMRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPDLQLEIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DCA+R+ + +Q S+L+ R++  + M   A+P YL+    P ++++L 
Sbjct: 127 MSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGQLSMVNCASPDYLERYGTPRALEDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  + +    P+     +W   +D   G+ +I    S + VN   S M   + G G+  
Sbjct: 186 DHIAVNY--FSPRNGRRMDWDFVID---GQKQIHKVRSLVSVNDAESAMACALHGLGLLQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              ++  +   +  LV ++ D ++    V   YP     + K++ F +++ +
Sbjct: 241 TARFLAYEHLQSGQLVEVLPDYVSEPLPVSVIYPHNRHLSPKVRVFVDWVAM 292


>gi|56414624|ref|YP_151699.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363552|ref|YP_002143189.1| hypothetical protein SSPA2344 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56128881|gb|AAV78387.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095029|emb|CAR60575.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 304

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 128/251 (50%), Gaps = 9/251 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+L 
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLA 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKHFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            +++EL +H  + F +  P  +    W +A  D  + E  I C +  NS  ++ Q C+ G
Sbjct: 180 ETVEELKRHLCLGFSE--PVSLN--TWPIACSDGQLHE--IKCGISSNSGETLKQLCLNG 233

Query: 239 SGIALLPDYIV 249
           +GIA L DY++
Sbjct: 234 NGIACLSDYMI 244


>gi|152996308|ref|YP_001341143.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837232|gb|ABR71208.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 303

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 145/295 (49%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + +R F  VA + SFT AA+QL ++QS ISR ++ LE+++G++L +R+ R L LT
Sbjct: 5   MEYDLNAVRQFIKVAENLSFTVAAQQLDVTQSGISRAVNRLESQLGLRLLHRNTRNLKLT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G    +    +   LE    EL E  ++P G L+I+     G+ ++   + + L  YP
Sbjct: 65  VDGELFLKRVKPLVGGLEEAHQELLEYGLEPKGCLKISAPSAFGRAVVMPIIAKLLDEYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+L ++ +D+  +  D  IR    IQ S +I R L        A+P YL     P
Sbjct: 125 QLTIELVLTDRIVDLVGEGFDAVIR-SGNIQDSRVIARPLKAAGWVTVASPKYLNTYGSP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +++EL  HN +   +  P   + F W     +R    P    L V+    +++  +L  
Sbjct: 184 KTLEELPAHNCMQVRN--PVTGQLFPWTFRNNERDKDFPIRGSLVVDHGDPLVEAALLSI 241

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+A L  + V+D   +  L  ++ +    S  +   YP A   + KL  FR+ + 
Sbjct: 242 GMAQLMTFFVEDYLKDGLLTPVLNEYARSSTPLTLLYPSARHRSAKLMMFRDALL 296


>gi|90407716|ref|ZP_01215895.1| hypothetical transcriptional regulator [Psychromonas sp. CNPT3]
 gi|90311185|gb|EAS39291.1| hypothetical transcriptional regulator [Psychromonas sp. CNPT3]
          Length = 308

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 151/297 (50%), Gaps = 23/297 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD + L +F  V    SFT AA  L +++S++SR+I+ LE  +G +L  R  R LTLT
Sbjct: 1   MGFDLNTLTIFTQVVNCNSFTKAAINLGITKSTVSRKIAELEDHLGARLLTRSTRNLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++ TS++  +++  +I++ ES     G + I   ++   +L++  + +F+ ++P
Sbjct: 61  KEGINFYQSTSQILDRIDQAEIDVMESHDFIRGTMSIVIPVEAENSLMRECITDFMKIHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L + N+ +DI  +  D  I+    ++ SSLI R          A+P YL+   EP
Sbjct: 121 ELIIKLEISNRKVDIISEGVDFIIQAGN-VEDSSLIARVFYHATRILIASPEYLERNNEP 179

Query: 181 LSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYC 235
           +++++L   H  I               L+T+    G   +S L    +VN+  + +  C
Sbjct: 180 MTLKDLKAPHQQIV--------------LSTMKHGTGGHVLSGLPYRFKVNTLSASLNAC 225

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           V G GIA + + + +D      L  ++ ++      + F YPE    T +L+ F +F
Sbjct: 226 VKGLGIAYMSELLCRDLIKEGKLKHLLPNIYAEKVPINFIYPERKLMTKRLRKFLDF 282


>gi|114561733|ref|YP_749246.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333026|gb|ABI70408.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 303

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 144/290 (49%), Gaps = 9/290 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA ++   +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAAREIGQPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +    + H++E  +  ++ +    SG LRIA  +   Q+++      F+ LYP+I+
Sbjct: 63  ALFFQHCDSISHEIEAAKATIENTHNDISGALRIAIPVSFSQDVIGHLCSSFMRLYPNIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+QSS L+ R L        A+P Y+K    P + 
Sbjct: 123 LDIQFTDNDVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYIKKFSSPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           QEL +HN I  G  +   +    W L   +R I       ++VNS   + +  +   GIA
Sbjct: 182 QELTQHNGILLGTTLSAPI----WALGKGNRKIMATFKRKVRVNSASMVKRLALDDYGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +L +   K      +LV I+++     F VY  Y    +    + AF +F
Sbjct: 238 MLSNTSCKQELATGSLVPILQEWPMEPFKVYGVYSSRRQLASNISAFLDF 287


>gi|206559709|ref|YP_002230473.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035750|emb|CAR51641.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 307

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 133/303 (43%), Gaps = 12/303 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W ++  F  VA  GS + AAE+L +S ++ SR ++ LE  +G +L  R  R L LT+ G 
Sbjct: 4   WTQIEFFVQVAELGSLSKAAERLGMSSAAASRCLNALEERLGARLVERTTRRLWLTDAGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + HR    + ++L      + E+SV P+G LR+  ++      +   L EF   YP++ +
Sbjct: 64  EYHRRCVAILNELSEADAAVNEASVIPAGTLRVTASVSFASIYIAPALPEFHRRYPNLNV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  N+  D      D AIR R+    S +  RKL        A+P YL     P +  
Sbjct: 124 QIVAANRYPDFIEAGIDVAIRTREHEADSGITVRKLAETRRVLAASPGYLAKHGAPATPD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H L+ +       +  F   A       +   S L  N    I    + G GI + 
Sbjct: 184 ALGDHRLLVYNLANDPYVLHFRHGAKKQSVTIK---SVLDANEGQVIRAAALAGLGILIQ 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK------AR 295
           P YI+ D+     LV ++ D   P+ TV   Y        K++ F  F+  +      AR
Sbjct: 241 PLYIIHDDIVAGKLVPVLTDWQLPALTVNIAYQSRRHQPAKIRVFTEFLIERFERLGLAR 300

Query: 296 DWK 298
            WK
Sbjct: 301 KWK 303


>gi|163798048|ref|ZP_02191987.1| Transcriptional regulator [alpha proteobacterium BAL199]
 gi|159176644|gb|EDP61218.1| Transcriptional regulator [alpha proteobacterium BAL199]
          Length = 313

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 145/287 (50%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  + S   AA  ++LS S +S+Q+S LE  +G++L  R  R ++LTE GS  +
Sbjct: 7   MTIFVAVVENSSLAGAARHMNLSPSVVSKQLSALEDRLGVRLLNRTTRRVSLTEVGSAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +   ++  +  +  +   P G L+I          +  +L  F+   P++Q+Q++
Sbjct: 67  ERSKRILADVDEAEAAVSTAHSSPRGLLKITAPSTFAHRHVAPHLPGFMDRNPEVQVQML 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D AIR+ + ++ SSLI RKL   H    AAP YL     P   +E+ 
Sbjct: 127 VADRLVDLVEEGVDLAIRIAQ-LKDSSLIARKLAPNHRKLVAAPDYLAKWGTPARPEEIT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H LI+     P  + D++++   +  +   R   +  N   SI+   + G+G+A+L  +
Sbjct: 186 DHALISLQPGSP--INDWHFVVDGEETVIRAR-GAIATNHGDSILALALSGAGLAMLAAH 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V ++     L+ ++++ +     +Y  YP     + K++AF +++ 
Sbjct: 243 VVGEHIKAGRLISVLDEHVREDVPIYAVYPSNRHLSPKVRAFVDYLV 289


>gi|28868763|ref|NP_791382.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852002|gb|AAO55077.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|330872704|gb|EGH06853.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964165|gb|EGH64425.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016390|gb|EGH96446.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 298

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 136/289 (47%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA +L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMELYPQLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N  +D+  +  D AIRL + +Q S ++  +L    M+  A+P YL+    P S+ 
Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCASPSYLERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELSRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+ +     LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQKHLKEGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286


>gi|134292298|ref|YP_001116034.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135455|gb|ABO56569.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 334

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 106/187 (56%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTSSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQNNNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++      + AAP YL    EP SI++L 
Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVSVAAPAYLDKYGEPRSIEDLA 185

Query: 188 KHNLITF 194
           +H  + +
Sbjct: 186 EHKAVNY 192


>gi|221198994|ref|ZP_03572039.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205254|ref|ZP_03578270.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175045|gb|EEE07476.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181445|gb|EEE13847.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 294

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 16/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A  +P YLK    P +
Sbjct: 121 RLNLDLTDRRVDVIGEGFDLVLRI-GALEDSTLIARALGAWKMIACVSPAYLKRHGAPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
             EL  H  + +G           W   VD   G PR   +Q     N+   +    + G
Sbjct: 180 PAELANHTCLLYGR-----ERRVGWEFRVD---GAPRTFDVQGPLVANNGEVVRDAAIAG 231

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLP +IV    D+  LV +++       T+   +P+  +    L+ F  F+
Sbjct: 232 LGIALLPSFIVGAALDSGALVPVLDAYAPAPITLNAVFPQHREGFVTLRTFIGFL 286


>gi|293603416|ref|ZP_06685843.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292818189|gb|EFF77243.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 311

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 144/304 (47%), Gaps = 24/304 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ AA  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLYYFSQVVEQGGFSAAARALDIPKSRLSRRISHLEESLGVRLLQRTTRRLRLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+          +++   +P+G + ++  + + Q++L   L EFL  +P I 
Sbjct: 63  ERYLHYCREMAASARAADDAMRQLQSEPAGPVIVSCPVSIAQDVLAPLLPEFLDAWPAIS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++ N+ +D+  +  D A+R+R  + + + L+ R L T      A+P YL+    P +
Sbjct: 123 VQLLVTNRRVDLIREGVDLALRVRTKLDTDAELVVRHLGTARGTLVASPGYLQRRGTPDT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235
            Q+L  H  ++F D       +  W    D+  GE       P++SC   N ++ + +  
Sbjct: 183 PQDLASHTTLSFSD----PQNEVRWPLRNDK--GEEVQIELKPQLSC---NDFIVLTEAA 233

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291
           V G GIALLP    ++      LV ++    +P   V+  YP      G + A R  + F
Sbjct: 234 VRGRGIALLPSIATQEQLRRGQLVPVLPQWQSPEGIVHCIYP---SRRGMMPAVRTLLDF 290

Query: 292 LKAR 295
           L  R
Sbjct: 291 LSQR 294


>gi|218508253|ref|ZP_03506131.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 308

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 145/300 (48%), Gaps = 15/300 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 11  DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    + +FL  YP+IQ
Sbjct: 71  RAYYDRCSEPLAHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISDFLKAYPEIQ 130

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N  +D+  +  D  IR  + ++ S+++ ++L     +  AAP YL++   P   
Sbjct: 131 IDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPGYLRDRALPTKP 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +    L+     +  W     R   + R+S  +    + ++  +   G GI 
Sbjct: 190 EDLKDHQCV----LLNGRNGEAEWHLISGRKSVDVRVSGSISSRDFDAVSAFTYRGHGIG 245

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298
           LLP     +      L+R++ D  +P   V+  YP     T +    R  +FL A + WK
Sbjct: 246 LLPSTYCDEQIERGALIRVLPDWSSPEIFVHAVYP-----TRRFLPLRLQVFLDALKAWK 300


>gi|99078218|ref|YP_611476.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035356|gb|ABF62214.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 305

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 146/290 (50%), Gaps = 17/290 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--H 67
           V   VA +  F  AA +L +S+S++S++I+ +E  +G +LF+R  R ++LTE G     H
Sbjct: 9   VVVAVAETQGFAAAARRLGVSKSAVSKRITQIENRLGAQLFHRSTRNVSLTEAGEHFYSH 68

Query: 68  RVTS-EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            V + E   + E + + LQE+   P G+LR+   +  G+  +   +  FL  YP + I +
Sbjct: 69  AVRAQEAAQEAEDSVLALQEA---PKGRLRVNVPMAFGRLHVAPLISGFLARYPGVSIDM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D++ +D+  D  D A+R    +  S+L+ RK+  +     AAP YL     P ++ +L
Sbjct: 126 VMDDRMVDLFADGFDLALR-GGTLADSALVARKIAALRNVLVAAPTYLARHGAPQTVSDL 184

Query: 187 DKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             HN +  +F     + + D +  A   RP G        VN+  ++ +  + G+GI  L
Sbjct: 185 RFHNCLQYSFSRDFQEWVFDCDGKAETFRPSG-----SYSVNNGEALREAVLGGTGIGRL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P +    +     LVR++     PS T+Y  YPE      K++ F +++ 
Sbjct: 240 PTFTAGPDLASGRLVRVLPQCQLPSQTLYAIYPERRYLPTKVRVFIDYLL 289


>gi|209520738|ref|ZP_03269486.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209498827|gb|EDZ98934.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 354

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 13/287 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  A+  L LS + ++R ++ LE  +G +L  R  R L+LTE G+  
Sbjct: 6   SMRVFVKVADLGSFVGASGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGATY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE  +  +   + +P G LRI   +  G + L   ++ +   YPD+   +
Sbjct: 66  LERVRHILADLEGVEQMVVARNHEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVPDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T +M   A P YL     P+  ++L
Sbjct: 126 TLADRHVDLVEEGFDVGILVARHMRSASIVTRRLTTGYMTVCATPDYLAQHGTPMRPEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
            +H+ ++      +  E       V   P GE R+   + +  N+   + Q+ +LG G+A
Sbjct: 186 PRHSCLS------RPAEQGGGEERVFTGPDGEVRVRPTNAIAANNAEMLRQFALLGMGVA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +LP Y++  +     LVR+++    P   +   YP  L    K++ F
Sbjct: 240 ILPSYLIGRDLAAGRLVRLLDGYSLPPIEITIAYPSRLHLPAKVRTF 286


>gi|157376372|ref|YP_001474972.1| transcriptional regulator [Shewanella sediminis HAW-EB3]
 gi|157318746|gb|ABV37844.1| transcriptional regulator [Shewanella sediminis HAW-EB3]
          Length = 302

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 137/262 (52%), Gaps = 13/262 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF+ V  SGSF+ AA+ L+++ SS++R I  LE  +   LF R  R L LTE+G  
Sbjct: 3   DLIKVFHQVVESGSFSQAAQALNMAPSSVARNIDNLEALIQTTLFKRSTRQLILTEEGQY 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H  ++++    +    E++ ++ +P G LRI+     G   L   + EFL  YP++QI+
Sbjct: 63  FHLQSAKLVQDADKLLSEMKGTNPEPEGVLRISVFESFGNIYLAPLIPEFLERYPNVQIE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDNK +D++ +  D AIR+  P Q S L  RKL+T +    A+P Y+         ++
Sbjct: 123 IELDNKVVDLNSENIDLAIRIGTP-QDSRLKARKLLTNYTSLVASPDYIHTHPRIGKPED 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L +HN +    LI    +  +W  +  R   E ++S    L       ++   + GSG+ 
Sbjct: 182 LQQHNCL----LISHERQRNHWYFS--RGKVEKKVSVTGNLISKGGSPLLSAALQGSGVL 235

Query: 243 LLPDYIVKD---NPNLVRIMED 261
           LL D++V     N  L+ I+ D
Sbjct: 236 LLSDWMVTPYIANKQLIEILPD 257


>gi|77457351|ref|YP_346856.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381354|gb|ABA72867.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 298

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA    FT AAE+L +S S ISRQI  LE  +  +L YR  R +TLTE G 
Sbjct: 6   WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIVRLEERLQTRLLYRSTRRVTLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + + + +P G LR+   +  G+  +   +  F+  YP ++I
Sbjct: 66  TFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMGHYPQLRI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P YL+    P S+ 
Sbjct: 126 DIELTNRQLDLVHEGLDLAIRLGR-LQDSRLVATRLAPRRMYLCASPSYLERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +           D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELGRHNCLIGSS-------DIWQLEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V ++ +   LV ++E    P+  V+  YP+    + K++   +F+
Sbjct: 238 PDYYVLEHLHSGALVSLLETHQPPNTAVWALYPQQRHLSPKVRKLVDFL 286


>gi|242001334|ref|XP_002435310.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215498640|gb|EEC08134.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 310

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 147/297 (49%), Gaps = 13/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R F  +   G    AAE L +S + +S+Q+  LE  +   L  R  R ++LTE G 
Sbjct: 4   FNVMRTFRRIVELGGLAKAAEDLGISAAGLSKQLRSLEAHLDTVLIQRTTRSMSLTETGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +L+  +  +++ S + +G LR+   +    ++L   + +FL  YPD+++
Sbjct: 64  SYYAECCRLLDELDALERSVKQQSQRVAGTLRVNAPLSFALSVLSPLITDFLRKYPDLKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+++++ +D      D ++RLR  +  S+LI R+L TI     AAP YLK   +P ++Q
Sbjct: 124 ELVMEDRIVDAVAHGFDVSVRLRTSLDDSTLIARRLATIEQKLCAAPAYLKLHGQPQTLQ 183

Query: 185 ELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCL-------QVNSYLSIMQYCV 236
           +L  H +I++        + D +  +  + P   P  + L       QVN+ L +  + +
Sbjct: 184 DLRHHQMISYSLAHTQGIVFDSDIDSAPNTP--APGSTALLFSGEHSQVNNSLMLRDFLI 241

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  LP ++      +  L R++ + +     +Y  YP       K+KAF +++
Sbjct: 242 AGLGIGALPSFLADPAIASGQLQRVLPEFVNEPRHIYAVYPTNRHLQPKVKAFVDYL 298


>gi|90410774|ref|ZP_01218789.1| putative transcriptional regulator [Photobacterium profundum 3TCK]
 gi|90328405|gb|EAS44703.1| putative transcriptional regulator [Photobacterium profundum 3TCK]
          Length = 292

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 141/288 (48%), Gaps = 11/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T A+ +  +  ++++R+I  LE  + ++L  RHAR L+LTE G K
Sbjct: 4   DDLNLFRMVVENGSYTGASRKTQVPVATLTRRIQALEECLNLRLLNRHARKLSLTEAGQK 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +  +L  T   + E     +GKL+IA   +L + LLQ  L  F+L +P I I+
Sbjct: 64  FYDDCAPLLQQLVDTTEHISEECKGAAGKLKIAAPSNLTKVLLQPMLNAFMLKHPAINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L + ++     +D  D  I  R  P + S+LI R++  +     A+P YLKN  EP   Q
Sbjct: 124 LHMSSE--PEQLDPTDWDIMFRVGPQRDSTLIARRISAVKDILVASPIYLKNNPEPKHAQ 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+    L+   + D N         G       + N    + + C  G GI L+
Sbjct: 182 DLHDHTLLKGNPLLRWRISDHNGDTVTINERGH-----FEANQLNVVRKACCAGLGITLM 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           PD +++   ++  LVRI+++       VY  Y        KL+ F  F
Sbjct: 237 PDVMLEQYIESGELVRILDNWSANPREVYILYNHRDYQPEKLRLFIEF 284


>gi|330975375|gb|EGH75441.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 298

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA +L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+ + N   LV ++E    P+  V   YP+    + K++   +++
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVGGLYPQQRHLSPKVRKLVDYL 286


>gi|91778887|ref|YP_554095.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691547|gb|ABE34745.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 296

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 144/289 (49%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F     + +FT AA +L LS+  +SR++  LE  +G++L  R+ R L +T+ G +
Sbjct: 4   DDMRIFVATVDARNFTAAANRLSLSKQFVSRRVMALEETLGVQLLIRNTRKLAVTDLGQE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++E  +  +      P G LR++  +  G   L   +  FL  + D++ +
Sbjct: 64  FYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMAHLSPLVAMFLREHGDVRFE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D AIR+   +  S+LI +KLV I + A  +P Y++    P    +
Sbjct: 124 MELSDRTVDVVGEGFDMAIRI-GALPDSTLIAQKLVDIRVVACCSPGYVRRRGAPAVPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L++H  + +G          +W   VD    G      L+ N+   +    V G GI  L
Sbjct: 183 LERHACLLYGH-----GGAVSWDFVVDGVTKGVDVHGPLRANNGELVRDAAVAGLGIVRL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD+IV D   +  LV ++ED +    +VY  YP+  +++  ++AF  F+
Sbjct: 238 PDFIVADALRSGQLVPVLEDFLPTVTSVYAVYPQHRQSSLTIRAFVEFL 286


>gi|254251654|ref|ZP_04944972.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
 gi|124894263|gb|EAY68143.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
          Length = 300

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 142/307 (46%), Gaps = 29/307 (9%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD      + V   V  +G+F  A E L L+Q ++SR ++ LE  +GI++F R AR +
Sbjct: 1   MGFDSRLLSGIGVLSAVIEAGTFARAGEALGLTQPAVSRAVARLEERIGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++   +  K  GKLR+      G  +L   +  FL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEDAALDAGRAKAKVRGKLRVNVDGTFGHYVLAPKMAAFLE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+P Y+   
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGVP-EPSSYRARLLLETRVLTCASPAYVARH 179

Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW----------LATVDRPIGEPRISCLQVN 226
            EP    EL D H  +   D  P     F W          LA   R         L VN
Sbjct: 180 GEPRHPHELADGHCCVLMRD--PATGRPFEWAFHRGGEVVPLAAAGR---------LMVN 228

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
              S++  CV G+G+A L +   +D   +  L  ++ +    +F +Y  Y  +   + K+
Sbjct: 229 DTGSLLGACVGGAGVAQLLELYARDTIADGRLKLLLPEWTDETFPLYAYYHASNLVSAKV 288

Query: 284 KAFRNFI 290
           +AF +F+
Sbjct: 289 RAFLDFV 295


>gi|315499078|ref|YP_004087882.1| transcriptional regulator, lysr family [Asticcacaulis excentricus
           CB 48]
 gi|315417090|gb|ADU13731.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 309

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 145/291 (49%), Gaps = 11/291 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D + VF  V  +G F  AAE+L L++S++ + I+ LE+ +G++LF R  R   LT
Sbjct: 1   MRDNLDGVAVFVEVVDAGGFARAAERLALTRSAVGKTIARLESRLGVRLFQRTTRTQNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +        +L+T +  L+    + SG+L+I+     G++ +Q  L +F   +P
Sbjct: 61  DEGHIFYERCVRAITELKTAEQMLESGRREVSGRLKISLPALFGRHCVQQVLLDFAAKHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L   +K +DI  D  D A+R  K   S+ L+ RKL++      A+P YLK    P
Sbjct: 121 SLELDLSFSDKVVDIIGDGYDLAVRNGKLGDSAGLMARKLLSQPKVVCASPAYLKAFGRP 180

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             I  L  H  + +   G + P  + D    +TV   +       L+ +S  SI    VL
Sbjct: 181 TDIPSLTGHEALLYIRNGQIFPWLLND-GMGSTVQAEVK----GRLRFDSQESITDAAVL 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           G GIA LP ++VK      +L+ ++E   +     Y  +P+A     +L+A
Sbjct: 236 GFGIAWLPYWLVKTQIARGDLISLLEPFASTPIDTYAVWPKATHLPLRLRA 286


>gi|148261035|ref|YP_001235162.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146402716|gb|ABQ31243.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
          Length = 310

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 142/291 (48%), Gaps = 10/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F      GSF+ AAE      S++SR ++ LE ++G+ LF+R  R L LTE G + +
Sbjct: 7   LRLFGRAVELGSFSKAAEAQGAKVSTVSRAVAALEADLGVALFHRSTRRLHLTEPGEQFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +  +     +P G LR+      G+  +   + +FL LYP ++++L 
Sbjct: 67  AQVQAILRNLDEARDSVAAMQARPQGLLRLNLPGAFGRRHVVPFIPDFLKLYPGLRLELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+    AD AIR+  P+  S+LI RKL        A+P YL       + ++L 
Sbjct: 127 FTDVRMDLLASGADLAIRI-GPLIDSTLIARKLAGHRRVVCASPSYLAGAPPLAAPRDLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +HN + +  L P     F        P  E P    L+ +   +++   + G GIALLP 
Sbjct: 186 RHNALIY-TLQPTDRWFFRRGTEAGEPEEEVPIAGILRSDDSEALLDAALAGVGIALLPV 244

Query: 247 YIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V ++     LVR++ D    + T    +Y  YP   + + K++AF +FI
Sbjct: 245 WLVGEDIARGRLVRLLPDWFSMISTRPGGIYGIYPPHARISPKVRAFLDFI 295


>gi|39934632|ref|NP_946908.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39648481|emb|CAE27003.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           CGA009]
          Length = 324

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DWD L+VF   AR GS   AA +L + QS+ISR+I+ LE+ +GI LF R   GL +TE
Sbjct: 6   SLDWDDLKVFLHAARGGSLGSAARRLKVDQSTISRKIAHLESTLGIALFERLPSGLRVTE 65

Query: 62  QGSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            G +L     R+ S V    E    ++Q S  + +G++R+AT   +    L         
Sbjct: 66  LGDRLLCHAERIESAVIAMRE----DVQCSGGRTAGRVRLATMEGIASLYLAAQFSRLHR 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P++ ++L+   + + ++   AD  +   +P +   ++  ++    +  YA+  Y+   
Sbjct: 122 QHPNLIVELLTSPQAVSVNRREADLFLSFFQP-RGQGMVSERIGCFELGLYASEDYIARN 180

Query: 178 REPLSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             P S  +L +H  IT+  DLI   ++   WL   D  I  P +S    NS ++ M    
Sbjct: 181 GLPCSSADLKRHRFITYIDDLIQ--LDSVRWL---DDVIKTPVVS-FHSNSMIAQMNAAA 234

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+ LLP +  K   +L+ I+ D ++ S  ++      L+   +++A  +F+
Sbjct: 235 GGLGLVLLPSFATKGRCDLIPILHDRMSTSRELWINVHTDLQFVPRIRAVSSFL 288


>gi|110634997|ref|YP_675205.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285981|gb|ABG64040.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 328

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 145/297 (48%), Gaps = 13/297 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA   SF  AAE+L+L  S+ISRQ+S LE  +G++LF R  R ++LTE G    + 
Sbjct: 22  AFVSVAEHLSFAEAAEELNLKSSTISRQVSKLEDSLGVRLFSRTTRRVSLTEAGKLYLKE 81

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L      +   + +P G LR++  + LG+  L   +  FL LYP++QI+    
Sbjct: 82  CRSLLKNLTDMDAMVSSLNAEPRGCLRVSLPVALGRLYLNSTITAFLNLYPNLQIEADFS 141

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R    + SS LI +K+ +      A+P Y+     P + Q+L  H
Sbjct: 142 DRFVDIVGEGYDLVVRT-GTLPSSGLIAKKIASNKRVLVASPRYIAKHGVPATPQDLADH 200

Query: 190 NLITFGDLIPKCMEDFNW-LATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           N + F           NW LA  + R + E   + +  NS  +I +  V G GIAL+  Y
Sbjct: 201 NCLRFSHY---ASSGSNWQLAKHEQREVVEVNGNFVS-NSSDAICEAAVGGLGIALIASY 256

Query: 248 IVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--DWK 298
           +  D   +  LV ++    + P   +Y  YP     T K+KAF +F+  + R  DW 
Sbjct: 257 LAHDGIQSGGLVCLLPGWTSQPEAGIYVMYPSTRYLTPKVKAFTSFLEKRFRGVDWN 313


>gi|115358083|ref|YP_775221.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283371|gb|ABI88887.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 307

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 137/298 (45%), Gaps = 12/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W +L++F + A  GS + AAEQL +S ++ SR +S LE  +G +L  R  R + LT+ G 
Sbjct: 4   WTQLQLFVLTADLGSLSKAAEQLDMSNAAASRTLSSLEERLGARLIERTTRRMWLTDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + HR  + V  +L        E  V P G LR+ +++      L   L EFL  YP++ +
Sbjct: 64  EYHRRCTAVIAELAEADAIASEEVVNPRGVLRVTSSVSFAMMHLAPALPEFLKRYPNLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+   N+  +      D AIR ++    S +  R+L        A+P YL     P   +
Sbjct: 124 QITATNQYQNFIESGIDIAIRTKEHEGDSCITIRRLAETRRVLAASPAYLATHGRPQKPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           +L +HN++ +   +        +L  + R   E  I   S L  N    I+     G GI
Sbjct: 184 DLAQHNMLVYNLAVDP------YLLHLRRGKEERNIAIASALDSNEGQVIVAAGRAGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            + P YI+ D+     LV ++ED   P  T+   Y        K++ F +F+  + ++
Sbjct: 238 VVQPLYIIHDDIVSGRLVPVLEDWQLPRLTINLAYQSRRYQPAKIRVFTDFLIERVKN 295


>gi|149911731|ref|ZP_01900338.1| Transcriptional regulator [Moritella sp. PE36]
 gi|149805204|gb|EDM65222.1| Transcriptional regulator [Moritella sp. PE36]
          Length = 302

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 148/299 (49%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D+  + VF  V   GSF+ AAE+L +++S++S++IS LE  +G++LF R  R + LT
Sbjct: 1   MKDDFSAIPVFVAVVERGSFSSAAEKLGMTKSAVSKRISVLEDNLGVRLFNRTTRSIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +        +         L      P G L+I   +   +  +   +KEFL  YP
Sbjct: 61  EAGERFSDYARNAFVIANEGFAALHNLQGIPKGTLKINAPMTFTRLHIVPYIKEFLDSYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L +D++ + +     D  IR+ + +++SSLI +KL        A+P YL+    P
Sbjct: 121 DVRVILSMDDRIVSLVEGGYDVGIRIGE-LENSSLIAKKLADCKSVLCASPEYLEKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  HN I +   + +   ++ +     +   EP+ + + VN+  +I++  + G G
Sbjct: 180 SKPEDLSHHNCINYS--LFQGGAEWTFYKDSKKIKLEPKGNFI-VNNSDAILEVLLNGLG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  +P +IV +   +  L+  M++   P   +Y  YPE      K++ F  FI  K  D
Sbjct: 237 ICQMPTFIVAEHLKSQRLMTFMDEYALPKHAIYAVYPERKHLPEKVRVFIEFISHKLGD 295


>gi|262194584|ref|YP_003265793.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262077931|gb|ACY13900.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 296

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 141/302 (46%), Gaps = 40/302 (13%)

Query: 6   DKLRVFYVVAR---SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L   Y  AR   +GSF+ AA +   S++++S+ ++ LE  +G+ L  R+ R LTLTE 
Sbjct: 2   DRLTAMYAFARVVDAGSFSAAARRWGRSKAAVSKYVADLEAHLGVTLLRRNTRSLTLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  +    E+ + ++  +  L+E      G LR+          L     +F+  +P +
Sbjct: 62  GAAYYPRCIEILNAVDAAETGLREQQSALRGTLRVTAPPGFASRYLAVLTSDFVARHPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L L ++ ID+  +  D A+R+ +P Q SSLI R+L      A AAP YL    +P +
Sbjct: 122 RIDLDLTHRMIDLVEEAVDVAVRMTEP-QDSSLIARRLAPAPCIAVAAPRYLAARGQPET 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW---------------LATVDRPIGEPRISCLQVNS 227
            +EL  H+          C+ D N+                 TVD P         +VNS
Sbjct: 181 PRELRAHD----------CLVDTNFRDQQRWRFRVGGRTQRVTVDGP--------FRVNS 222

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            L++    + G GIA++P  I +       LV ++   +   +++Y  YP       +++
Sbjct: 223 PLAVRDLAIAGHGIAIVPALIAEAAIATGELVEVLPGTVALRWSIYAAYPRREHLPERVR 282

Query: 285 AF 286
           A+
Sbjct: 283 AY 284


>gi|261365131|ref|ZP_05978014.1| transcriptional regulator, LysR family [Neisseria mucosa ATCC
           25996]
 gi|288566565|gb|EFC88125.1| transcriptional regulator, LysR family [Neisseria mucosa ATCC
           25996]
          Length = 298

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 145/290 (50%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AAEQL +S +  S+ +S LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAAEQLDISTAMASKHVSHLENSIKAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +    NL+   L E+   YP++ + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGNLIGTWLAEYRERYPEVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ K + S SLI + L  I     A+P YL    +P + +E+ 
Sbjct: 127 LDNRHVDLIAEGFDLALRVAKTL-SPSLIVKPLAQIQFVLLASPEYLAKHGKPQTPEEVM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYCVLGSGIAL 243
           +H  I     +P   +  N L    R  GE  I  L    Q ++ L I +    G+GIA 
Sbjct: 186 RHPAI-----LPTYTDQRN-LEITHRETGEKSILTLNPVIQSDNTLMIRELVRAGAGIAY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P +  + +     LV ++ +    +  +   Y +    + K+++F +F+
Sbjct: 240 QPLWSARQDLKEGRLVSLLPEYRVRTEQLNAVYVDRAFLSAKVRSFIDFL 289


>gi|327191086|gb|EGE58138.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 308

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 145/300 (48%), Gaps = 15/300 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 11  DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    + +FL  YP+IQ
Sbjct: 71  RAYYDRCSEPLAHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISDFLKAYPEIQ 130

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N  +D+  +  D  IR  + ++ S+++ ++L     +  AAP YL++   P   
Sbjct: 131 IDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPGYLRDRALPTKP 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +    L+     +  W     R   + R+S  +    + ++  +   G GI 
Sbjct: 190 EDLKDHRCV----LLNGRNGEAEWHLISGRKSVDVRVSGSISSRDFDAVSAFTYRGHGIG 245

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298
           LLP     +      L+R++ D  +P   V+  YP     T +    R  +FL A + WK
Sbjct: 246 LLPSTYCDEQIERGALIRVLPDWSSPEIFVHAVYP-----TRRFLPLRLQVFLDALKAWK 300


>gi|82775594|ref|YP_401941.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|309787118|ref|ZP_07681730.1| uncharacterized HTH-type transcriptional regulator yafC [Shigella
           dysenteriae 1617]
 gi|81239742|gb|ABB60452.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|308924696|gb|EFP70191.1| uncharacterized HTH-type transcriptional regulator yafC [Shigella
           dysenteriae 1617]
          Length = 304

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P+Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPNYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMINREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|115359484|ref|YP_776622.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284772|gb|ABI90288.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 306

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 139/283 (49%), Gaps = 7/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A  GS++ AA  L ++ S++S+ I  LE    +KLF R  R LTLT++G +LH
Sbjct: 12  LIAFSRAASLGSYSAAARALGVTPSAVSKSIQRLEQHFELKLFNRTTRSLTLTQEGRELH 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +  ++E  +     +  +P+G L++   + +G +L+   L  F   +P + I L 
Sbjct: 72  ERTLRLLAEMEAIEQAAVSARSEPAGTLKVTAPLPIGIHLIAPALPAFRKRFPKLSIDLR 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D AIR+   +  S LI R+L   H+ AYA+P YL     P    +L 
Sbjct: 132 LGDHFVDLVGEGVDVAIRVGD-LTGSRLISRQLSPHHIGAYASPDYLARRGVPKHPDDLV 190

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F        + F W   T D  +     + + V++  ++    V G G+ + P 
Sbjct: 191 DHDCVNF--RFQSSGQVFRWNFVTGDGSLDLIPDAGIVVDTSDAVAAVMVAGGGVGITPA 248

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           Y+         LV+++ + + P  T+   +PE+ +++  +KAF
Sbjct: 249 YVADSYVKRGELVQVLTEFVEPRSTITALWPESRRSSPNVKAF 291


>gi|126738231|ref|ZP_01753952.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126720728|gb|EBA17433.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 313

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 139/283 (49%), Gaps = 10/283 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++ F  VA+SGS T AAEQL  SQ ++ R I  LE ++G +LF RHARGL+L+E G
Sbjct: 8   DWSLIQSFLAVAQSGSLTGAAEQLGRSQPTLGRHIRALEQDLGQRLFDRHARGLSLSETG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L  +   +  ++++  ++    S +  G +R+  ++    +LL   + E     P I+
Sbjct: 68  VSLLPMAEAMKEQMQSFSLQAAGLSNQLEGTVRLTASVFASHHLLPEIIAEIRRREPLIE 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+  +   ++    AD A+R+ +P Q   ++ R +  + +  +AA  YL     P   
Sbjct: 128 VELVPTDSSENLLFREADIALRMYRPTQ-LDVVTRHVADLRLGIFAAKSYLDRRGRPKLP 186

Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +EL  H L+ +   DLI   M+D  W A         +  C    +Y  +++   LG GI
Sbjct: 187 EELWSHELVGYDRNDLILHTMQDMGWPAKRS----HFKTRCDNQATYWQLVR---LGCGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
                 I + +P +  ++ ++  P   V+      ++ T +++
Sbjct: 240 GFCQSGIARADPLVEELLPEISIPPLPVWLTAHAVMRQTPRIR 282


>gi|209884027|ref|YP_002287884.1| transcriptional regulator of LysR family [Oligotropha
           carboxidovorans OM5]
 gi|209872223|gb|ACI92019.1| transcriptional regulator of LysR family [Oligotropha
           carboxidovorans OM5]
          Length = 305

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 144/288 (50%), Gaps = 14/288 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD  R+F  VA++GS + AA  L ++ S++ R+++G E  +G++LF R   G  LT  G
Sbjct: 7   NWDDYRLFLAVAQAGSLSGAARLLGVTHSTVFRRLTGFEKTLGVRLFERLPSGYVLTAAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +   T+ +  ++   +  +     + SG++RI  T  L  +LL  +L  F + +P I+
Sbjct: 67  EAMQHATARIDDEIAAVRRRVTGQDQRLSGQVRITATDMLAISLLPPHLAAFRVAWPGIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++ +  +D++   AD A+RL  P+Q  +L+ R++  +    Y A  Y    RE +  
Sbjct: 127 LELLVSDTRLDLTRREADIALRLGNPVQ-ETLVGRRIGRLAFAVYCAAAY---HREGIG- 181

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H+ I FG    P       WL  + RP         + NS  + +    +G G+A
Sbjct: 182 EDLASHDWIGFGSAHAPLRQVLAEWLPGL-RP-------QFRTNSITAAIAAARVGIGLA 233

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP  I   +  L R+          ++    E L++T +++AF +F+
Sbjct: 234 ALPCAIADPDSGLRRVAPFPGDFRLDLWLLTHEDLRHTARIRAFVDFM 281


>gi|254472253|ref|ZP_05085653.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211958536|gb|EEA93736.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 309

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 23/300 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V   GSF  A  +L++ ++ +S Q++ LE  +G+++ +R  R L+LT  G +L
Sbjct: 10  RLAVFACVVEQGSFAAAGRKLNMGRAKVSEQVALLEEALGVRVLHRSTRKLSLTTDGERL 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +    +     +++ + + SG LR+  T D  Q +L   LK F+  YP ++++L
Sbjct: 70  LPHAQGLLQLSQDALASVEQGAEELSGTLRVTCTQDFMQRVLSRFLKGFVRRYPALKLEL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D++ +D+  D  D A+R+  P   S++I R L  +    YA+  YL     P  + +L
Sbjct: 130 LVDDQKLDLIEDEVDVALRIGIP-ADSAMIGRVLCDVEFQLYASCDYLSEHGRPALVSDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             H  I   D+        N L+  D     RPI     +  + NS   I+    +GSGI
Sbjct: 189 KNHRGIDTLDVA------LNSLSLSDQTGLRRPISLH--AMCRTNSPSGILSMVEIGSGI 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDW 297
            LLP Y+V+D      + R++ D    S  +Y  YP     + K  A R+ +F+   R W
Sbjct: 241 GLLPLYLVRDAVERGTVERVLPDWSFGSAKLYLLYP-----SKKQLARRSRVFMDEFRKW 295


>gi|213969141|ref|ZP_03397280.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301383964|ref|ZP_07232382.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302064150|ref|ZP_07255691.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134077|ref|ZP_07260067.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213926139|gb|EEB59695.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 298

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 136/289 (47%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA +L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMELYPQLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N  +D+  +  D AIRL + +Q S ++  +L    M+  A+P YL+    P S+ 
Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRKMYLCASPSYLERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELSRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+ +     LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQKHLKEGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286


>gi|255592214|ref|XP_002535661.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
 gi|223522375|gb|EEF26724.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
          Length = 298

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 141/292 (48%), Gaps = 9/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  F  V  +GSF++AAE+L  + S +SR IS LE ++G+ L +R  R L LTE+
Sbjct: 2   LDVGALIAFVAVIDTGSFSNAAERLGQTPSGVSRTISRLEQQLGMTLIHRTTRRLDLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS L      +   LE T+ E   +  +P+G +R+        +L+   L +FL  YP +
Sbjct: 62  GSWLLARARRILADLEETESEAALARARPAGLVRVNAATPTLDHLIAPQLADFLDAYPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L      +D+  + AD AIR+   +  S+L  R+L    +   AAP YL+    P  
Sbjct: 122 QVELTSGETVVDLIEEKADVAIRIGN-LSDSTLNARRLGRSRIRVLAAPGYLERHGTPQQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L KH L+ F  + P  +    W        G   +  +   S  +I    + G+GI 
Sbjct: 181 VDDLAKHRLVGF--VAPTSLN--TWPLRAGGEEGWRAVPHVTATSGETIRHLALQGAGIV 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
            L D++ + +     LV ++ED   P +  V+  + +      ++KA  +F+
Sbjct: 237 SLSDFLTRADIAAGRLVPVLEDASLPWTQPVWAVFYKQGALAPRVKALVDFL 288


>gi|110635382|ref|YP_675590.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286366|gb|ABG64425.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 311

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 147/300 (49%), Gaps = 29/300 (9%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ ++VF  V  +GSF+ AA  L ++ S++S+ IS +E  +G++L  R  R L+LT +G 
Sbjct: 6   WE-MQVFLRVVETGSFSEAARLLRMTPSTVSKLISRVEARLGVRLVERSTRRLSLTTEGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H  +  +  +L+  + EL   +    G +R+  ++  G   L+  L EF   YP+I +
Sbjct: 65  IYHERSRALLQELDLLERELSYGAAATDGTVRVNASVAFGVLGLEPLLPEFWRAYPNIVV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+ +D  D A R+  P+  S ++ R++        A+P YL  C  P  ++
Sbjct: 125 DLSLSDEIVDLYLDRTDIAFRV-GPLPDSGMMARRIGVARRKIVASPSYLGRCGTPRKVE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA----------TVDRPIGEPRISCLQVNSYLSIMQY 234
           +L +HN + F         +F   A          TVDR +       L  N+  ++ + 
Sbjct: 184 DLSRHNCLGF---------NFRRAAPVWPLKESGRTVDRVVN----GSLLANNGETVRRM 230

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G G+A + DY V+ +     LV ++ D + +    V+  +   L+   +++ F +F+
Sbjct: 231 ALAGVGLARMGDYHVRADLAAGRLVEVLTDAVESDEEEVHAVFLGGLRMPQRVRVFLDFV 290


>gi|307153965|ref|YP_003889349.1| LysR family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306984193|gb|ADN16074.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 7822]
          Length = 304

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 15/304 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ ++ F  V ++G F  AA +++LS+S +++ +  LE E+G++L  R  R +T T  G 
Sbjct: 4   FESIKAFTQVIKAGGFAAAAREMNLSRSMVNKLVINLENELGVQLLQRTTRQVTPTATGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  ++ + +   +P G L+I   +  G   L   + +F+L YPD+Q+
Sbjct: 64  AFYERCLSILAELEEAELAVSQLQREPKGILKINAPMSFGTLHLAPAIADFMLQYPDLQV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L+++ ID   +  D  +R+ KP Q++ LI   LV +     AAP Y      P   +
Sbjct: 124 QLTLEDRFIDPIAEGFDVTVRICKPFQAAGLIVHPLVGVKQVLCAAPSYFDKRGIPKHPK 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGI 241
           EL +H+ + +G L         W   +  P GE  ++    L  N+  ++    + G GI
Sbjct: 184 ELGEHSCLHYGYL----AAGNQW--KLFGPKGECTVNINGVLCSNNGEALCSAALKGLGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKAR 295
            LLP +I+ D     +LV+++ D       VY  YP     + K++ F  F   +F +  
Sbjct: 238 VLLPTFIIGDELKTGSLVQVLPDYFGLELFVYVIYPTNRHLSIKIQLFTEFVKGVFGEQS 297

Query: 296 DWKF 299
            W F
Sbjct: 298 CWGF 301


>gi|254708832|ref|ZP_05170643.1| Transcriptional regulatory protein, LYSR family [Brucella
           pinnipedialis B2/94]
 gi|256030358|ref|ZP_05443972.1| Transcriptional regulatory protein, LYSR family [Brucella
           pinnipedialis M292/94/1]
          Length = 308

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 141/299 (47%), Gaps = 27/299 (9%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 193

Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           S ++L++H L  +  DL+        P+   D+                  +V+S L  +
Sbjct: 194 SPEDLNRHRLTGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 239

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 240 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296


>gi|323963761|gb|EGB59263.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|327254927|gb|EGE66537.1| hypothetical protein ECSTEC7V_0219 [Escherichia coli STEC_7v]
          Length = 304

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYIARYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E + S L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVQYS-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|255065372|ref|ZP_05317227.1| transcriptional regulator, LysR family [Neisseria sicca ATCC 29256]
 gi|255050197|gb|EET45661.1| transcriptional regulator, LysR family [Neisseria sicca ATCC 29256]
          Length = 298

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 145/290 (50%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AAEQL +S +  S+ +S LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAAEQLDISTAMASKHVSHLENTIKAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +    NL+   L E+   YP++ + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGNLIGTWLAEYRERYPEVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ K + S SLI + L  I     A+P YL    +P + +E+ 
Sbjct: 127 LDNRHVDLIAEGFDLALRVAKTL-SPSLIVKPLAQIQFVLLASPEYLAKHGKPQTPEEVM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYCVLGSGIAL 243
           +H  I     +P   +  N L    R  GE  I  L    Q ++ L I +    G+GIA 
Sbjct: 186 RHPAI-----LPTYTDQRN-LEITHRETGEKSILTLNPVIQSDNTLMIRELVRAGAGIAY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P +  + +     LV ++ +    +  +   Y +    + K+++F +F+
Sbjct: 240 QPLWSARQDLKEGRLVSLLPEYRVRTEQLNAVYVDRAFLSAKVRSFIDFL 289


>gi|192290148|ref|YP_001990753.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192283897|gb|ACF00278.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 324

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 16/294 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DWD L+VF   AR GS   AA +L + QS+ISR+I+ LE+ +GI LF R   GL +TE
Sbjct: 6   SLDWDDLKVFLHAARGGSLGSAARRLKVDQSTISRKIAHLESTLGIALFERLPSGLRVTE 65

Query: 62  QGSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            G +L     R+ S V    E    ++Q S  + +G++R+AT   +    L         
Sbjct: 66  LGDRLLCHAERIESAVIAMRE----DVQCSGGRTAGRVRLATMEGIASLYLAAQFSRLHR 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P++ ++L+   + + ++   AD  +   +P +   ++  ++    +  YA+  Y+   
Sbjct: 122 QHPNLIVELLTSPQAVSVNRREADLFLSFFQP-RGQGMVSERIGCFELGLYASEDYIAQN 180

Query: 178 REPLSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             P S  +L +H  IT+  DLI   ++   WL   D  I  P +S    NS ++ M    
Sbjct: 181 GLPCSSADLKRHRFITYIDDLIQ--LDSVRWL---DDVIKTPVVS-FHSNSMIAQMNAAA 234

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+ LLP +  K   +L+ ++ D ++ S  ++      L+   +++A  +F+
Sbjct: 235 GGLGLVLLPSFATKGRCDLIPVLHDRMSTSRELWINVHTDLQFVPRIRAVSSFL 288


>gi|108760643|ref|YP_634909.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108464523|gb|ABF89708.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622]
          Length = 305

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 140/282 (49%), Gaps = 11/282 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F     +GSF  AAE++ LS+S++ + I+ LE  +  +LF R  R   LTE G   +  
Sbjct: 10  AFVQAVEAGSFALAAERMGLSRSAVGKSIARLEERLETRLFQRTTRRQGLTEDGQAFYER 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 +LE  +  L      P+G+LR++  +  G++     L+E +L +P +++++   
Sbjct: 70  CVRALAELEAAETALDSGRRAPTGRLRVSAPVMFGRHCAAPLLRELVLQHPGLELEIAFS 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R+      + L  R+L    M   AAP YLK    P ++++L +H
Sbjct: 130 DRMVDLVEEGYDLALRVAPLADHAGLTARRLGVQTMSVCAAPGYLKRHGRPKTLEDLGEH 189

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPD 246
           + + +G    +   +  W    D   GE RI+    L+ +   +IM   V G+G+A LP 
Sbjct: 190 DAVVYG----RNGVNKPWRFP-DGQGGEQRIAVQARLRFDDVETIMDAAVQGAGLAWLPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +++ +   +  LV ++E        +Y  +P++   T K++A
Sbjct: 245 WLIAEHLSSGRLVEVLETQRPYGNEIYAVWPQSKHLTSKVRA 286


>gi|315182743|gb|ADT89656.1| transcriptional regulator [Vibrio furnissii NCTC 11218]
          Length = 300

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 140/304 (46%), Gaps = 25/304 (8%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V   GSF  AAE+L +S    S+ IS LE ++G++L  R  R L  TE G   + 
Sbjct: 8   RMFVAVMELGSFAKAAERLAISSGQASKLISRLEQDLGVQLVKRSTRSLAATEVGQAYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               V   L+     ++ +S  PSG+LRI+  +  GQ+ L  +L +F   +PDI + +  
Sbjct: 68  RIKRVLDDLDALDDAIRNASRLPSGRLRISAPVTFGQSQLAPSLIDFSKQFPDITLDVKF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++  +  D A+R+ K +  SSLI RKL  + +   A+PHYL     P  I++L +
Sbjct: 128 SDRSVNVVDEGFDLALRIGK-LDDSSLIARKLCDVRVITLASPHYLSQHGTPTHIRDLAQ 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSI------MQYCVLGSG 240
           H+          C+ D N+      P    +  +    VN  L        ++    G G
Sbjct: 187 HH----------CIIDTNFRDPYHWPYLNEQGHVHDFAVNGRLKFSNAEVCLKAACAGLG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           I  LP ++         L+ I++    P   +Y  YP A       +AF +F+   F   
Sbjct: 237 ITRLPTFVAAQALKEQQLIAILQQYEVPPLGLYALYPPAKHLARSSRAFIDFLVNRFANG 296

Query: 295 RDWK 298
            DW+
Sbjct: 297 ADWE 300


>gi|238750486|ref|ZP_04611987.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           rohdei ATCC 43380]
 gi|238711417|gb|EEQ03634.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           rohdei ATCC 43380]
          Length = 300

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 153/298 (51%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V   GSF+ AAEQL  + S +SR +  LE+++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRAVKKLESKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +   +   + EL +S + P G LRI  +  +  +++   + EF   YP
Sbjct: 61  QEGEHYFRRVQNILRDMAAAENELLDSQLNPKGLLRIDASTPVLLHIIAPLMVEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  RKL+T + H  A+P YLK    P
Sbjct: 121 LVALSLVSSETFINLIERKVDIAIRV-GTLQDSTLRARKLMTSYRHILASPAYLKQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L  H  + F DL P       W LA  D  + E   S L  N+  +  + C+ G+
Sbjct: 180 QTVADLQHHICLGFNDL-PVLNR---WPLAGSDGQLYEI-TSDLTSNNGETQRRLCLEGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++++ +    +L+ ++E+    V  P   VY+   +A+ N  +L+ F +FI
Sbjct: 235 GIACLSDFMIQQDLQRGDLIPLLEEHILPVAMPINAVYYS-DQAISN--RLRCFIDFI 289


>gi|86156977|ref|YP_463762.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773488|gb|ABC80325.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 322

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 130/286 (45%), Gaps = 7/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+VF  VA +G F  A  +L LS  +++R ++ LE  VG +LF R  R +  TE G + 
Sbjct: 6   QLQVFVAVADAGGFARAGARLRLSPPAVTRAVAALEARVGARLFNRTTRTVRPTEAGLRF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 V   LET + E       PSG L +  ++  G+  L   ++ FL   P +   L
Sbjct: 66  LEPARRVLADLETAEREAAGEGAAPSGHLTLTASVTFGRWALAPVVRAFLRAQPGVGATL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +++  +  D A+R+ + +  S L+ RK+  I     A+P YL+    P S   L
Sbjct: 126 VLVDRVVNLVEEGVDVAVRIGQ-LPDSDLVARKVGEIRRVLVASPAYLRAHGAPASPARL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I F  L P     F   A   R +  P    L VN  L+ +     G G+ L   
Sbjct: 185 REHAAIAFTGLQPGREWRF---ADGGRQVAVPVAPRLVVNDALAALDAAEAGDGLTLALS 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           Y+V +      LV ++     P   V   +P A     K++AF +F
Sbjct: 242 YMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDF 287


>gi|83944006|ref|ZP_00956463.1| Putative transcriptional regulator, LysR family protein
           [Sulfitobacter sp. EE-36]
 gi|83845253|gb|EAP83133.1| Putative transcriptional regulator, LysR family protein
           [Sulfitobacter sp. EE-36]
          Length = 289

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 134/279 (48%), Gaps = 17/279 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA + SFT AA  L +S + +SRQ+  LE  +  KLFYR  R +T+TE 
Sbjct: 2   LSWEGVSEFVAVAEAQSFTAAANSLGISTAQVSRQVGALEARLDTKLFYRTTRKVTITET 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    +V   L   +  + +    P G+L +   +  G+N +   + +F+  YPD+
Sbjct: 62  GQVYYNHCRQVLDGLAEAERAITDLHQSPKGRLNLTAPVTYGENRIAPLVNDFVRRYPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  AAP YL     P +
Sbjct: 122 EVNLRLTNQLLDLVAESYDLAIRLGE-LEDSSMMAKRLASRRHYTCAAPEYLSAHGTPHT 180

Query: 183 IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           + ELD +N +  T G           W           R+   L+ NS  S++   +   
Sbjct: 181 LSELDGYNCLQGTLG----------YWRFQEKGTTRHIRVKGNLRCNSGASLVDAALKNL 230

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           GI  LPDY V+       LV +++    P   ++  YP+
Sbjct: 231 GIIQLPDYYVEAELRAGRLVSVLDTYRAPDDGIWAIYPQ 269


>gi|283834507|ref|ZP_06354248.1| contact-regulated protein A [Citrobacter youngae ATCC 29220]
 gi|291070057|gb|EFE08166.1| contact-regulated protein A [Citrobacter youngae ATCC 29220]
          Length = 304

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            ++++L +H  + F +  P  +    W +A  D  + E  + C +  NS  ++ Q C+ G
Sbjct: 180 ETVEQLKQHLCLGFSE--PVSLN--TWPIACRDGQLHE--VECGISSNSGETLKQLCLSG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|254250388|ref|ZP_04943707.1| hypothetical protein BCPG_05280 [Burkholderia cenocepacia PC184]
 gi|124879522|gb|EAY66878.1| hypothetical protein BCPG_05280 [Burkholderia cenocepacia PC184]
          Length = 308

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 142/293 (48%), Gaps = 10/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE
Sbjct: 3   NMEINDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P 
Sbjct: 63  SGQEFYVRAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P 
Sbjct: 123 VRLNLDLTDRRVDLIGEGFDLVLRIGS-LEDSTLIARPLGAWRMIACASPAYLKRHGTPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L  H  + +G           W   VD  +    +   L  N+   +    + G G
Sbjct: 182 TPADLAGHTCVLYGR-----ERRVGWEFRVDGAVRTFDVQGPLVANNGEVVRDAAIAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IALLP +IV    D+  LV +++  + P  T+   +P+  +    L+ F  F+
Sbjct: 237 IALLPHFIVGAALDSGALVPVLDAYVPPPITLNAVFPQHREGFVTLRTFIGFL 289


>gi|157371532|ref|YP_001479521.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323296|gb|ABV42393.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 291

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 124/257 (48%), Gaps = 8/257 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  VAR G+   AA +LH+ Q+++ R+I+  E  +G KLF R  +  +L+  
Sbjct: 2   MNWDDARFFLAVARCGTLRKAANELHVDQATVGRRITAFEESLGSKLFIRTPKSFSLSPL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      + + ++    +         G +RIATT  + +  +   LK     +P I
Sbjct: 62  GEEMLADVMNMENAVQAIGRKATSGDDSLCGNVRIATTDTMAEAFVIPALKALREQHPLI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++      DIS   AD AIR  +P +S  LI +++ TI M  YA   YL     P  
Sbjct: 122 TVTMLTAVNISDISYRGADLAIRGARP-ESDELIIKRMATIEMGLYATQDYLDKHGLPTK 180

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              L  H+L+ F  +L+P+   DF   A +D     P +  LQ NS L +      G GI
Sbjct: 181 GDHLSGHDLLMFPRELVPRHWNDFCGEALID-----PNV-VLQCNSQLLLRSATRNGLGI 234

Query: 242 ALLPDYIVKDNPNLVRI 258
            LL  ++   +P+LVRI
Sbjct: 235 GLLSSFLADKDPDLVRI 251


>gi|299770642|ref|YP_003732668.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
 gi|298700730|gb|ADI91295.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
          Length = 303

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 146/280 (52%), Gaps = 11/280 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEDQLGVALFKRTTRTLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGTLFYEHSRRALSEIQNAAALLDQGKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++ +D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRTVDLVEEGFDLCIRIGTLPDTTQLVAKPIGEHRMLLCASPDYLNEAGLL 180

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +I++LD H  I    FG +    ++  N       P+     + L +N   +I    + 
Sbjct: 181 ENIEDLDHHVTIADPHFGQIKKWQLQQEN-----SEPLFFKPKTKLLLNDLQAIKNAALA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           G+GIA LPD+++++   +  LV+++E + + +F ++  +P
Sbjct: 236 GAGIAWLPDWLIQNELQDGKLVQVLETMSSIAFPIHLVWP 275


>gi|114047687|ref|YP_738237.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113889129|gb|ABI43180.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 293

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 147/292 (50%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + +FT AA++L++S + +SRQI  LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAENFTLAAQRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  + +    P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAITDLKGSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 NVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYMAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELNQHNCLIGNHNYWRFIEN-------GRERNIKVRGNLICNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           PDY ++++     L+  ++        ++  YP+    + K++   +++  K
Sbjct: 236 PDYYIEEDIHAGRLISFLDAHREAKEGIWALYPQNRHLSAKVRVLVDYLAEK 287


>gi|187732313|ref|YP_001879005.1| LysR family transcriptional regulator [Shigella boydii CDC 3083-94]
 gi|187429305|gb|ACD08579.1| transcriptional regulator, LysR family [Shigella boydii CDC
           3083-94]
          Length = 304

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|207721361|ref|YP_002251802.1| transcriptional regulator protein [Ralstonia solanacearum MolK2]
 gi|207723605|ref|YP_002254003.1| transcriptional regulator protein [Ralstonia solanacearum MolK2]
 gi|206586520|emb|CAQ17107.1| transcriptional regulator protein [Ralstonia solanacearum MolK2]
 gi|206588807|emb|CAQ35769.1| transcriptional regulator protein [Ralstonia solanacearum MolK2]
          Length = 294

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 126/257 (49%), Gaps = 6/257 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  VAR+ +   AA++L + Q+++ R+I+ LE E+  KLF R +  L LT  
Sbjct: 1   MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLALTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      + H   T +  +  +  + +G +R+ATT  L    +   + +  L +P I
Sbjct: 61  GEALIGPAEAMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +      +++   AD A+R  +P  +  LI R++ TI    YA+  YL+   EP+ 
Sbjct: 121 DIVCLASKSIANLTKREADVAVRTLRP-TAPDLIARRVATIETGLYASRGYLRARGEPVE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+    L P+    + W A    P+   R+  LQ +S ++I +  + G GI+
Sbjct: 180 GSAFAGHDLV----LYPRNEVPWMWEALCGEPVAPSRV-VLQSSSAMTIFEAVIAGIGIS 234

Query: 243 LLPDYIVKDNPNLVRIM 259
            L       +P LVR++
Sbjct: 235 ELVCCRADPHPELVRVL 251


>gi|86358297|ref|YP_470189.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282399|gb|ABC91462.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 300

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 141/295 (47%), Gaps = 14/295 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 3   DLNDIAVFAKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    +  FL  YPDIQ
Sbjct: 63  RAYYDRCSEPLSHLLDAEQALGETQRKPGGLLKISVPVIFGQEVFYEFISAFLKTYPDIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L + N  +D+  +  D  IR    ++ SS+I ++L     +  AAP YLK    P   
Sbjct: 123 VDLFVTNLFLDLVAENIDVGIRFGD-LKDSSMIAQRLGKSVRYLVAAPEYLKGRAIPAKP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L +H  +    L+     +  W     R   + R+S  +    + ++  +   G GI 
Sbjct: 182 EDLTEHRCV----LLNGRNGEAEWHLVSGRKSLDLRVSGPVSSRDFDAVSAFTYRGHGIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP     +      L+R++ +  +P   V+  YP     T +    R  +FL+A
Sbjct: 238 LLPSTYCDEQIRRGELIRLLPEWSSPEIFVHAVYP-----TRRFLPLRLQVFLEA 287


>gi|17549331|ref|NP_522671.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431583|emb|CAD18261.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 315

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 147/292 (50%), Gaps = 13/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T  G+  +
Sbjct: 7   MQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE T+    +S+    G LRI     +G+ LL   +++F   YP +Q+++ 
Sbjct: 67  ERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPGLQLEIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DCA+R+ + +Q S+L+ R++  + M   A+P YL+    P S+++L 
Sbjct: 127 MSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGQLSMVNCASPDYLERYGTPRSLEDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI-- 241
            H  + +    P+     +W   +D   G+ +I    S + VN   S M   + G G+  
Sbjct: 186 DHIAVNY--FSPRNGRRMDWDFVID---GQKQIHKVRSLVSVNDAESAMACALHGLGLLQ 240

Query: 242 -ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            A L  Y    +  LV ++ D I+    V   YP     + K++ F +++ +
Sbjct: 241 TARLLAYEHLQSGQLVEVLPDYISEPLPVSVIYPHNRHLSPKVRVFVDWVAM 292


>gi|91778169|ref|YP_553377.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690829|gb|ABE34027.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 297

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 140/292 (47%), Gaps = 14/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D+L +F VVAR  SFT AA +L +SQ ++SR +  LE  +GI+L  R  R ++ TE G 
Sbjct: 6   YDQLAIFAVVARERSFTRAAARLGMSQPALSRAMRQLEERLGIRLLARTTRSVSATEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L RV +  + +++T    L +   KP+G+LRI         +LQ  L + L  +PDI++
Sbjct: 66  HLLRVVAPRFEEIDTELALLSQFRDKPAGRLRITAGEHPAVTILQPALAKILPDHPDIRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I+D    DI  +  D  +RL + I    +  R    + M    +P Y      P + +
Sbjct: 126 EVIVDYGLTDIVAEGYDAGVRLGEQIAKDMIAVRIGPEVRMAVVGSPDYFARHPRPRTPR 185

Query: 185 ELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L +HN I     T+G + P   E       V R  G+     L  N+    +   + G 
Sbjct: 186 DLIRHNCIAIRLPTYGGIFPWEFEKKGEELKV-RVEGQ-----LVFNNIAMRLDAALRGL 239

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+  +P+ +VK +     LVR++ D   P    +  YP   +++      R+
Sbjct: 240 GLTYMPEDLVKAHVREGVLVRVLSDWCPPIPGYHLYYPSRRQSSPAFTVLRD 291


>gi|325168909|ref|YP_004280699.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064632|gb|ADY68321.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 305

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 7/247 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G F+ AA  + ++ S++S+ I+ LE  +G +L  R  R   LT +G   
Sbjct: 11  EMEVFVQVVERGGFSSAARSVGMTPSAVSKLIARLEARLGTRLINRSTRVFKLTSEGCVF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +   +E  +  +  +   PSG+LR++T+     ++L G L EFL  YP+I + +
Sbjct: 71  FERATRILADIEDAE-RIASAGEVPSGRLRLSTSASYATHVLAGILPEFLERYPEITVDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +  +D+  +  D A+R   P++SSSLI R+L    M   AAP Y+     P +I+EL
Sbjct: 130 VQSDLVVDLLEERMDVAVRA-GPLKSSSLIARRLGDTAMTIVAAPCYVDRRGLPRTIEEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           ++H+ +  G    + M+   W L +    I  P  + +Q N   ++ Q  + G+GIA L 
Sbjct: 189 ERHDRLGLG--YTRSMD--GWPLISAGATIFAPVAARVQANDGEALRQLVLAGNGIARLA 244

Query: 246 DYIVKDN 252
           ++ ++D+
Sbjct: 245 NFTIRDD 251


>gi|300694133|ref|YP_003750106.1| transcription regulator protein, lysr family [Ralstonia
           solanacearum PSI07]
 gi|299076170|emb|CBJ35483.1| putative transcription regulator protein, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 314

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 146/290 (50%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T  G+  +
Sbjct: 7   MQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTADGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE T+    +S+    G LRI     +G+ LL   +++F   YPD+Q+++ 
Sbjct: 67  ERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPDLQLEIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DCA+R+ + +Q S+L+ R++  + M   A+P YL     P ++++L 
Sbjct: 127 MSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGRLSMVNCASPDYLARYGTPGTLEDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  + +    P+     +W   +D   G+ +I    S + VN   S M   + G G+  
Sbjct: 186 DHIAVNY--FSPRNGRRMDWDFVID---GQKQIHKVRSLVSVNDAESAMACALHGLGLLQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++  +   +  LV ++ D I+    V   YP     + K++ F +++
Sbjct: 241 TARFLAYEHLLSGQLVEVLPDYISEPLPVSVIYPHNRHLSPKVRVFVDWV 290


>gi|170735107|ref|YP_001774221.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821145|gb|ACA95726.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 305

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 140/289 (48%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE G +
Sbjct: 4   NDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTESGQE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +++ 
Sbjct: 64  FYVRAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAVRLN 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +  +
Sbjct: 124 LDLTDRRVDLIGEGFDLVLRIGS-LEDSTLIARPLGAWRMIACASPAYLKRHGTPQTPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  + +G           W   VD  +    +   L  N+   +    + G GIALL
Sbjct: 183 LAGHTCVLYGR-----ERRVGWEFRVDGAVRTFDVQGPLVANNGEVVRDAAIAGLGIALL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +IV    D+  LV +++  + P  T+   +P+  +    L+ F  F+
Sbjct: 238 PHFIVGAALDSGALVPVLDAYVPPPITLNAVFPQHREGFVTLRTFIGFL 286


>gi|260771320|ref|ZP_05880246.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260613636|gb|EEX38829.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|315180920|gb|ADT87834.1| Transcriptional regulator [Vibrio furnissii NCTC 11218]
          Length = 295

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 149/292 (51%), Gaps = 15/292 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            W+ +  F  VA +GSFT AA++L  S +++SR+I+ LE  +G+KL  R  R ++LTE G
Sbjct: 3   SWEGVSEFVAVAETGSFTRAAQRLATSVANVSRRIALLEERLGVKLLLRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P GKL++   +  G+  +   L +FLL +P ++
Sbjct: 63  QVYYQQCRALLEGLEQAELTVTQMQQTPKGKLKVTAPVTYGEQKIAPLLHDFLLQHPQLE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +L N+ +D+     D A+RL + +  SS I R+L   +++  A PHYL     P ++
Sbjct: 123 LEFVLTNQKLDLIEQGVDVAVRLGQ-LGDSSFIARRLSNRNLYVCATPHYLAQYGTPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H+ +       +  E+    A   R     R+ C    S + ++   +   G+  
Sbjct: 182 SELTQHSCLVGTHDHWRFKENQQSRAIRVR----GRVHC---ASGVVLLDAALKDMGLVQ 234

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
           LPDY V+ +    R++E  + P++      V+  YP+    + K++   +++
Sbjct: 235 LPDYYVEAHLASGRLVE--VLPAYRDEREGVWALYPQNRHLSPKVRLLVDYL 284


>gi|260553726|ref|ZP_05825997.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260405126|gb|EEW98625.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 303

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 144/280 (51%), Gaps = 11/280 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEEQLGVVLFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGALFYEHSRRALSEIQNAAALLDQGKINATGRLRMSVPVLFGQLFAAPLIVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++ +D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRTVDLVEEGFDLCIRIGALPDTTQLVAKPIGQHRMLLCASPDYLNKAGSL 180

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             I++LD H  I    FG +    ++  N      +P  +     L +N   +I    + 
Sbjct: 181 EHIEDLDIHTTIADPHFGQIKKWQLQKENSEPLFIKPKAK-----LLLNDLQAIKNAALA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           G GIA LPD+++++   +  LV+++E + + +F ++  +P
Sbjct: 236 GGGIAWLPDWLIQNELQDGTLVQVLETMSSIAFPIHLVWP 275


>gi|304392465|ref|ZP_07374406.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
 gi|303295569|gb|EFL89928.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
          Length = 293

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 7/196 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +FDW++ R F V A  GS + AA  L L+Q ++SRQ++GLE  +G+ LF R +R L LT+
Sbjct: 7   AFDWNQARAFLVTAEEGSLSAAARALRLTQPTLSRQVAGLEEALGVTLFERTSRALLLTQ 66

Query: 62  QGSKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            G++L    R   +  +++  T    Q  +V  +GK+ IA T  +   +L   LKE    
Sbjct: 67  AGTELLEHFRGMGDAANRIALTATG-QSQAV--TGKVVIAATNGMATYVLPRVLKELRTK 123

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            PD+QI++I  N+  D+    AD AIR R+P Q  +L  R+L  +    YA+  YL    
Sbjct: 124 APDLQIEIIASNETSDLRRREADIAIRHRRP-QDEALFARRLRDMTGQLYASTPYLDEVG 182

Query: 179 EPLSIQELDKHNLITF 194
            P + ++L + N + F
Sbjct: 183 RPSTAEDLARMNFVGF 198


>gi|253689285|ref|YP_003018475.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755863|gb|ACT13939.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 297

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 135/289 (46%), Gaps = 10/289 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L LSQS++S  I GLE  +G++L  R  R +  T+ G
Sbjct: 5   NFNDLISFLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL       +  +E+  + L +   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  EKLAHSLGPRFADIESELVALGDMRERPAGNIRITAGEHAVDSILWPVLKPFLANYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI +   D  IRL + +    +  R    + M    +P+Y      P + 
Sbjct: 125 VEITVDNALTDIVLGRFDAGIRLGEQVAKDMIAVRIAPEMSMAVVGSPNYFARHPAPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           Q+L  H  I     +P     + W    ++   E R+     L +NS    +    +G G
Sbjct: 185 QDLQHHRCINM--RLPTMGGIYAW--EFEKNGREIRVRVEGQLTMNSLRQRIDAAQIGLG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +A +P+  V+++     L+R++ +   P    Y  YP   ++T     F
Sbjct: 241 LAYVPEDAVREDIASGRLIRVLTEWCPPFPGYYLYYPSRKQHTTAFSLF 289


>gi|239833452|ref|ZP_04681780.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239821515|gb|EEQ93084.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 378

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 129/252 (51%), Gaps = 16/252 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V  +GSF+ AA  L ++ S+IS+ IS +E  + ++L  R +R L+LT +G   
Sbjct: 84  EMQVFMRVVEAGSFSEAARLLRMNPSTISKLISRIEARLSVRLLERSSRRLSLTSEGQIY 143

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +    E  + EL + S    G +R+  ++ LG   L+  L EFL  YP+I I L
Sbjct: 144 YERSQGLLRDFEEVERELSQGSASTGGTVRVNASVALGTLALEPLLPEFLAAYPNIVIDL 203

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+ +D  D A R+   + +SS++ RKL T      AAP YL+    P+++ +L
Sbjct: 204 SLSDELVDLYLDRTDVAFRI-GTLPNSSMMARKLGTARRKIVAAPAYLERRGTPMTVDDL 262

Query: 187 DKHNLITFGDLIPKCMEDFNWLATV------DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +HN I F         +F   A V       R +       L  N+  ++ +  V G G
Sbjct: 263 AEHNCIGF---------NFRRAAPVWPLKESGRIVDRAVYGSLLANNGETVRRMAVAGLG 313

Query: 241 IALLPDYIVKDN 252
           +A + DY  +++
Sbjct: 314 LARIGDYHARND 325


>gi|90409972|ref|ZP_01217989.1| hypothetical transcription regulator protein [Photobacterium
           profundum 3TCK]
 gi|90329325|gb|EAS45582.1| hypothetical transcription regulator protein [Photobacterium
           profundum 3TCK]
          Length = 294

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 149/299 (49%), Gaps = 25/299 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++KL  F  V  +GS + A++   +  SSISRQ++ LE+E+GI+L  R  R + LTE G 
Sbjct: 4   FNKLHYFNCVVETGSISKASKVFDVQPSSISRQLASLESELGIRLLERTTRNVGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +  +  +LE  +  + +  + P G L+I+TT+  G++ +   L +F   YPDI+I
Sbjct: 64  TYYDYSKRIISELEEAKRAVGDLQLSPIGNLKISTTVGFGESRILPLLPKFRKAYPDIRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L  + +D+  +  D AIR  + +  SSLI RKLV  H    ++P Y+     P S +
Sbjct: 124 EVELTERIVDLIEENVDIAIRSGR-LPDSSLIARKLVDNHFLLCSSPEYMDENGLPDSPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238
           +L  H+ + +G           +    D  + +     L +  Y+++       Q  + G
Sbjct: 183 QLINHDCVVYG-----------YHGWKDWYLVKNNFQKLAIKHYMTVDSVNGQKQLILHG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSF-------TVYFCYPEALKNTGKLKAFRNFI 290
            GIAL+P + VKD  +  R+++ +    F       + Y  Y      + K++ F +F+
Sbjct: 232 GGIALIPYWAVKDELDSGRLIQVLPEHQFSPCLHLSSTYAIYQNRNLVSSKMRVFLDFL 290


>gi|238794450|ref|ZP_04638060.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           intermedia ATCC 29909]
 gi|238726245|gb|EEQ17789.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           intermedia ATCC 29909]
          Length = 300

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 150/298 (50%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L  F  V   GSF+ AAEQL  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKAHSDELITFVTVVECGSFSRAAEQLDQANSVVSRTVKKLEGKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +  ++ T + E+ ++ + P G LRI  +  +  ++L   + EF   YP
Sbjct: 61  QEGEHYFRRVQNILREMATAENEILDNQLNPKGLLRIDASTPVVLHILAPLMAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  RKL+T + H  A+P YL+    P
Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRV-GTLQDSTLRARKLMTSYRHILASPAYLEQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L  H  + F DL P       W LA  D  + E   S L  N+  +  + C+ G+
Sbjct: 180 QTVADLQHHLCLGFNDL-PVLNR---WPLAGADGQLYEIN-SDLTSNNGETQRRLCLEGN 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++++ +       P LV     V+ P   VY+   +A+ N  +L+ F +FI
Sbjct: 235 GIACLSDFMIRRDLQRGDLVPLLVEHTLPVVMPINAVYYS-DQAVSN--RLRCFIDFI 289


>gi|261316325|ref|ZP_05955522.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|265987395|ref|ZP_06099952.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|261295548|gb|EEX99044.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|264659592|gb|EEZ29853.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
          Length = 293

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 140/298 (46%), Gaps = 27/298 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179

Query: 183 IQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            ++L++H L  +  DL+        P+   D+                  +V+S L  ++
Sbjct: 180 PEDLNRHRLTGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQVE 225

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 226 AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281


>gi|107028510|ref|YP_625605.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686507|ref|YP_839754.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897674|gb|ABF80632.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652222|gb|ABK12861.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 305

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 140/289 (48%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE G +
Sbjct: 4   NDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTESGQE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +++ 
Sbjct: 64  FYVRAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAVRLN 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +  +
Sbjct: 124 LDLTDRRVDLIGEGFDLVLRIGS-LEDSTLIARPLGAWRMIACASPAYLKRHGTPQTPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  + +G           W   VD  +    +   L  N+   +    + G GIALL
Sbjct: 183 LAGHTCVLYGR-----ERRVGWEFRVDGAVRTFDVQGPLVANNGEVVRDAAIAGLGIALL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +IV    D+  LV +++  + P  T+   +P+  +    L+ F  F+
Sbjct: 238 PHFIVGAALDSGALVPVLDAYVPPPITLNAVFPQHREGFVTLRTFIGFL 286


>gi|27381664|ref|NP_773193.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27354833|dbj|BAC51818.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 323

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 9/248 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA  GS + AA  + LSQ+ +++ ++ LE  +G KLF+R  R L++TE G    
Sbjct: 25  LEVFAKVAAIGSLSGAARAMGLSQTMVTKHVAALEARLGTKLFHRTTRRLSITEAGRSYL 84

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +   +E     +    V+P G LR+   +  G   +   + EF   +P++ ++L 
Sbjct: 85  ESSERILADMEAADAAVARERVEPRGLLRVNVPVVFGTRQIAPAIAEFSERHPEVTVELG 144

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D++ +  D AIR+ K ++ SS++ RKL    +   AAP YL     P  + +L 
Sbjct: 145 LNDRLVDLAEEGWDLAIRIGK-LRDSSMVARKLAPNRLVVCAAPSYLAKHGTPRRVADLA 203

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
            HN +  G  + +      WL  VD   GE R+     L+ N+  ++    + G G+A  
Sbjct: 204 AHNCL--GYTLSQQASAAEWLFGVD---GEIRVQVSGTLRANNGDALRAATLAGLGLARQ 258

Query: 245 PDYIVKDN 252
           P +I+ D+
Sbjct: 259 PTFIIADD 266


>gi|193063161|ref|ZP_03044252.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194427549|ref|ZP_03060097.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|218552783|ref|YP_002385696.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|218693670|ref|YP_002401337.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|260842434|ref|YP_003220212.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|300905649|ref|ZP_07123395.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|301305765|ref|ZP_07211851.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|192931069|gb|EDV83672.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194414319|gb|EDX30593.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|218350402|emb|CAU96087.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|218359551|emb|CAQ97091.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|257757581|dbj|BAI29078.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|300402541|gb|EFJ86079.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300838940|gb|EFK66700.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|315253522|gb|EFU33490.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|323160263|gb|EFZ46220.1| hypothetical protein ECE128010_3502 [Escherichia coli E128010]
          Length = 304

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++ + + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMASAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|326796629|ref|YP_004314449.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326547393|gb|ADZ92613.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 298

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 17/293 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  V R GSF+ AA +L +S S ISR ++ LE+E+G  L +R  R + L+E G
Sbjct: 3   NWEAMEAFVEVVRQGSFSAAAIKLSVSASHISRLVTQLESELGSTLLFRTTRRIRLSEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   L + +  +   +  P G  ++      G+  +   + +FL  +P I+
Sbjct: 63  ELYYQHCRGLPAALSSAEEVISSLNQAPIGSFKMTCATTFGERYIAPVMNDFLTTHPKIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ +D+  +  D AIR+   ++ SSL+ R+L        A+  Y+     P ++
Sbjct: 123 LDLHLTNRAVDLIEENYDLAIRM-GAMKDSSLLSRRLCDRQEFLCASREYIDQYGMPHTL 181

Query: 184 QELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
            EL+KH          KC+     +WL   +    E ++S   + NS L+++     G G
Sbjct: 182 SELNKH----------KCLIGSKNHWLFQQNGQRKEVKVSSQWRSNSGLALLDAVKKGLG 231

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LPDY V+   D+  LV ++     P   V+  YP++   + KLKA  +F+
Sbjct: 232 IAQLPDYYVRKEFDSGRLVPLLSQYQYPYSGVWLVYPKSQTPSPKLKAVCDFL 284


>gi|307729917|ref|YP_003907141.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584452|gb|ADN57850.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 333

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE G+  
Sbjct: 6   SMRVFVKVADLGSFVRAATSLDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGATY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE  +  L     +P G LRI   +  G   L   ++ +   YPD+   +
Sbjct: 66  LERVRHILDDLEGVEQMLAARHHEPVGTLRIVAPVVFGLQSLAPAVQSYAARYPDVVPDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  D+  +  D  I + +P +S+S++ R+L T  +   A P YL+    P   ++L
Sbjct: 126 TLADRQADLVDEGFDVGILIGRPARSASIVTRRLTTCQLTVCATPAYLQRHGTPTRPEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
             H  ++      +  E          P G  R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 RSHPCLS------RPPEQGGEERVFSGPQGPVRVRPANAIAANNSEMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LV ++ D   P   +   YP  L    K++ F
Sbjct: 240 LPSYLIGRDLAEGRLVELLGDYRLPEIEITIAYPSRLHLPAKVRTF 285


>gi|302187338|ref|ZP_07264011.1| LysR protein [Pseudomonas syringae pv. syringae 642]
          Length = 311

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + ++L  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLLNRTTRRVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  ++  P G+LR+     L   LL   L +F   YPDIQI
Sbjct: 64  VFYERVVRLLADMDDAETSLSSATSLPRGRLRVDVPSPLASLLLMPALPDFHARYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R  + I   SL+ R++  + +  YAAP YL+    P+  Q
Sbjct: 124 DMGVSDRMVDLIGENVDCVVRGGE-IADQSLMARRVGDLQLGVYAAPDYLQRMGTPVHPQ 182

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ +     G  +P  M        V    G   ++    N+Y++     + 
Sbjct: 183 ELEDSAHRIVGYLWARTGKALPYAMHRDGEKVHVQ---GRYTLAVDDGNAYIAA---GLA 236

Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LPDY+ + +     LV + ED    S  +Y  +P     + K++ F ++I
Sbjct: 237 GMGILWLPDYMARPHRECGALVSLFEDWQLDSMPMYVAFPPNRHISIKVRVFIDWI 292


>gi|293418302|ref|ZP_06660737.1| HTH-type transcriptional regulator yafC [Escherichia coli B088]
 gi|291324830|gb|EFE64245.1| HTH-type transcriptional regulator yafC [Escherichia coli B088]
          Length = 304

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIVRGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|152970578|ref|YP_001335687.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330015459|ref|ZP_08308161.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150955427|gb|ABR77457.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328531680|gb|EGF58511.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 296

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 149/305 (48%), Gaps = 38/305 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL- 66
           L +F  V   GSFT AA+ L + + ++S+ I  +E ++G+KL +R  R L++T +G    
Sbjct: 5   LNIFVQVVEQGSFTRAADILQIHRPTVSKAIQQIEDDLGVKLIHRTTRKLSVTAEGEAFY 64

Query: 67  HR---VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           HR   V SEV   + +        ++ P G+LRI   + L   +L  NLK F  LYPDI 
Sbjct: 65  HRARLVLSEVNDMMASF-----SPTLPPRGRLRIDVPLALAHAILIPNLKHFQSLYPDID 119

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+  +K  D+  +  DC +RL + +Q SS I R+L  I M   AAP YL+    P ++
Sbjct: 120 VILVSSDKKTDLISEGVDCLVRLGE-LQDSSFISRRLGDIRMVTCAAPSYLQQYGRPETL 178

Query: 184 QELDKHNLIT-FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCV 236
            +LD+H  I  F D     ME   W  T D      RP+G    S L  NS   I+  C 
Sbjct: 179 ADLDQHRAINFFSDHSRDVME---WKFTKDGKIVSLRPVG----SMLVDNS--DILLSCG 229

Query: 237 LGSGIALLPDYIVKDNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L +G+ ++        P++    +E+++T        YP   K    L   R+++  K R
Sbjct: 230 L-AGLGIIQATFNALAPHIASGALEEILTQ-------YPSVSKPVSVLYPDRHYLSPKVR 281

Query: 296 ---DW 297
              DW
Sbjct: 282 VFIDW 286


>gi|54301902|ref|YP_131895.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46915322|emb|CAG22095.1| hypothetical transcription regulator protein [Photobacterium
           profundum SS9]
          Length = 299

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 149/299 (49%), Gaps = 25/299 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++KL  F  V  +GS + A++   +  SSISRQ++ LE+E+GI+L  R  R + LTE G 
Sbjct: 8   FNKLHYFNCVVETGSISKASKVFDVQPSSISRQLASLESELGIRLLERTTRNVGLTEAGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +  +  +LE  +  + +  + P G L+I+TT+  G++ +   L +F   YPDI+I
Sbjct: 68  TYYDYSKRIISELEEAKRAVGDLQLSPIGNLKISTTVGFGESRILPLLPKFRQAYPDIRI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L  + +D+  +  D AIR  + +  SSLI RKLV  H    ++P Y+     P S +
Sbjct: 128 EVELTERIVDLIEENVDIAIRSGR-LPDSSLIARKLVDNHFLLCSSPEYMDENGLPDSPE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238
           +L  H+ + +G           +    D  + +     L +  Y+++       Q  + G
Sbjct: 187 QLINHDCVVYG-----------YHGWKDWYLVKNNFQKLAIKHYMTVDSVNGQKQLILHG 235

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSF-------TVYFCYPEALKNTGKLKAFRNFI 290
            GIAL+P + VKD  +  R+++ +    F       + Y  Y      + K++ F +F+
Sbjct: 236 GGIALIPYWAVKDELDSGRLIQVLSEHQFSPCLHLSSTYAIYQNRNLVSSKMRVFLDFL 294


>gi|307129507|ref|YP_003881523.1| hypothetical protein Dda3937_01192 [Dickeya dadantii 3937]
 gi|306527036|gb|ADM96966.1| Hypothetical transcriptional regulator yafC [Dickeya dadantii 3937]
          Length = 295

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 147/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL L+ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGLANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + EL E+   P G LRI     +  +LL   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETELMETRRTPRGLLRIDAATPVVLHLLMPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EVTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIVASPDYVAKHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + EL +H  + F +  P  +    W +A  D  + E  +  L  NS  ++ Q  + G+
Sbjct: 180 QHVDELARHLCLGFTE--PVSLN--TWPVARADGQLYEIAVG-LSSNSGETLKQLSLTGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV ++ D    V  P   VY  Y +   +T +++AF +F+
Sbjct: 235 GIACLSDYMIDGEIARGELVELLADQRLPVAMPFSAVY--YSDRAVST-RIRAFIDFL 289


>gi|74310823|ref|YP_309242.1| putative LysR type transcriptional regulator [Shigella sonnei
           Ss046]
 gi|170021444|ref|YP_001726398.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739]
 gi|194438207|ref|ZP_03070299.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|253774770|ref|YP_003037601.1| LysR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160322|ref|YP_003043430.1| putative DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|297516533|ref|ZP_06934919.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           OP50]
 gi|300919152|ref|ZP_07135685.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300927900|ref|ZP_07143460.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|312970306|ref|ZP_07784487.1| uncharacterized HTH-type transcriptional regulator yafC
           [Escherichia coli 1827-70]
 gi|73854300|gb|AAZ87007.1| putative transcriptional regulator LYSR-type [Shigella sonnei
           Ss046]
 gi|169756372|gb|ACA79071.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|194422871|gb|EDX38866.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|242376038|emb|CAQ30723.1| predicted DNA-binding transcriptional regulator LYSR-type
           [Escherichia coli BL21(DE3)]
 gi|253325814|gb|ACT30416.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972223|gb|ACT37894.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253976432|gb|ACT42102.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|300413750|gb|EFJ97060.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300464055|gb|EFK27548.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|310336955|gb|EFQ02093.1| uncharacterized HTH-type transcriptional regulator yafC
           [Escherichia coli 1827-70]
 gi|323165907|gb|EFZ51689.1| hypothetical protein SS53G_3829 [Shigella sonnei 53G]
 gi|323963571|gb|EGB59128.1| LysR substrate binding domain-containing protein [Escherichia coli
           H489]
 gi|323972500|gb|EGB67706.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
          Length = 304

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|260853413|ref|YP_003227304.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|260866351|ref|YP_003232753.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
 gi|257752062|dbj|BAI23564.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|257762707|dbj|BAI34202.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
 gi|323157957|gb|EFZ44059.1| hypothetical protein ECEPECA14_0166 [Escherichia coli EPECa14]
 gi|323176520|gb|EFZ62112.1| hypothetical protein ECOK1180_5221 [Escherichia coli 1180]
          Length = 304

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGQRYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIVRGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|172061440|ref|YP_001809092.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993957|gb|ACB64876.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 300

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 145/298 (48%), Gaps = 11/298 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD      + V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++   S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEEAAVDAGRSRARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P++ +++ + ++  D+  D  D A+R   P + SS   R L+  H+   A+P Y+   
Sbjct: 121 RFPELSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETHVLTCASPAYVARH 179

Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYC 235
            EP   ++L D H  +   D  P     + W     D  +       L VN   +++  C
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYGWEFHRGDEVVVFDATGRLTVNDTGALLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V G G+A L +   +D   +  LV+++ +    +F +Y  +  +   + K++ F +F+
Sbjct: 238 VGGEGVAQLLELYARDILADGRLVQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFV 295


>gi|157159669|ref|YP_001456987.1| LysR family transcriptional regulator [Escherichia coli HS]
 gi|307314702|ref|ZP_07594300.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|157065349|gb|ABV04604.1| transcriptional regulator, LysR family [Escherichia coli HS]
 gi|306905821|gb|EFN36346.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|315059421|gb|ADT73748.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|323181620|gb|EFZ67035.1| hypothetical protein ECOK1357_5031 [Escherichia coli 1357]
 gi|323380020|gb|ADX52288.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323945576|gb|EGB41626.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|324115452|gb|EGC09394.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
          Length = 304

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVAMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|260773319|ref|ZP_05882235.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260612458|gb|EEX37661.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 290

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 141/276 (51%), Gaps = 15/276 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA  GSFT AAE+LH S ++ISR++  LE  +GIKL  R  R +++TE G 
Sbjct: 4   WEGVNEFVAVAEMGSFTQAAERLHTSVANISRRVLQLEERLGIKLLLRTTRKVSVTEAGM 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L   +  + +    PSGK+++   +  G+  +   L +FLLLYP +++
Sbjct: 64  LYYQQCKVLVDGLLQAEQAITQIQHTPSGKIKVTAPVTYGEQKIAPLLHDFLLLYPQLEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L N+ +D+     D AIRL + ++ SS I RKL    ++  A+  YL     P ++ 
Sbjct: 124 ELVLTNQKLDLIDQGIDLAIRLGQ-LEDSSFIARKLSDRRLYVCASEDYLAQYGTPYALS 182

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           EL +H+ LI   D         +W     +     ++S  ++ +S + ++   + G G+A
Sbjct: 183 ELTRHSCLIGTHD---------HWRFKEHQQSRSIKVSGRIRCSSGMVLLDAALKGMGLA 233

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            LPDY V +      LV ++         V+  YP+
Sbjct: 234 QLPDYYVTEPLAQGRLVEVLATFRDDREGVWALYPQ 269


>gi|269961320|ref|ZP_06175685.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833871|gb|EEZ87965.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 302

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 147/286 (51%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGRRYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP I++ L 
Sbjct: 67  EYASQAVNLAQQGVDAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPKIEVDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D+     D  IR+ + + +S+L+ ++L        A+P YL+    P    +L 
Sbjct: 127 LEDAMVDLVEQGFDLGIRIGE-LATSNLVAKRLAPCKSVLCASPEYLEEFGVPTKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +     +   ++ ++ + +     P+ + + VN+  +I Q  + GSGIA LP +
Sbjct: 186 THNCLRYSYF--RGGVEWMFINSGNEYKVLPKGNFV-VNNSEAIRQLLLRGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   +    NL  +ME+   P   +Y  +PE      K++ F +FI
Sbjct: 243 IAAKDFAAGNLKPLMEEFSLPEHAIYAVFPERKHMPLKVRVFIDFI 288


>gi|94502092|ref|ZP_01308595.1| transcriptional regulator, LysR family protein [Oceanobacter sp.
           RED65]
 gi|94425765|gb|EAT10770.1| transcriptional regulator, LysR family protein [Oceanobacter sp.
           RED65]
          Length = 291

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 141/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F +VA  GSFT A++ L++S + +SR IS LE  +  KL YR  R +TLT +G 
Sbjct: 4   WEGVVEFTLVAELGSFTKASQNLNISVAQVSRLISLLEKRLKTKLLYRTTRKVTLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   +V ++LE  +  L     KP G +++   +  G+  +Q  + EF+ ++P I++
Sbjct: 64  IYYQRCKQVLNELEEAERALGNLQNKPQGTIKLTAPVMYGETFIQPLVHEFMRIHPAIEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+ +D+     D AIRL K ++ S+LI + L        A+P YLK+   P S+ 
Sbjct: 124 TANLSNQQLDLIDGGYDLAIRLGK-LKDSTLIAKPLSQRRYRVCASPSYLKDYGAPHSLP 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  HN +            +       + +    I  L  NS  +++   +   G+  L
Sbjct: 183 ELVDHNCLV-------GQHQYWRFEHKGKQVATKVIGTLSCNSGYALVDAALKNLGLIQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+Y V D+    +LV ++        T++  YP     + K++   NF+
Sbjct: 236 PNYYVDDHIEKGHLVEVLSKYREEPETIWAVYPHNRHLSPKVRQLVNFL 284


>gi|78065958|ref|YP_368727.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966703|gb|ABB08083.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 307

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 132/303 (43%), Gaps = 12/303 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W ++  F  VA  GS + AAE+L +S ++ SR ++ LE  +G +L  R  R L LT+ G 
Sbjct: 4   WTQIEFFVQVAELGSLSKAAERLGMSSAAASRCLNALEERLGARLVERTTRRLWLTDAGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + HR    +  +L      + E+SV P+G LR+  ++      +   L EF   YP++ +
Sbjct: 64  EYHRRCVAILMELSEADAAVNETSVNPAGTLRVTASVSFASIYIAPALPEFHRRYPNLNV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  N+  D      D AIR R+    S +  RKL        A+P YL     P +  
Sbjct: 124 QIVAANRYPDFIEAGIDVAIRTREHEADSGITVRKLAETRRVLAASPGYLAKHGAPATPD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H L+ +       +  F   A       +   S L  N    I    + G GI + 
Sbjct: 184 ALCDHRLLVYNLANDPYVLHFRHGAKKQSVTIK---SVLDANEGQVIRAAALAGLGILIQ 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK------AR 295
           P YI+ D+     LV ++ D   P+ TV   Y        K++ F  F+  +      AR
Sbjct: 241 PLYIIHDDIVAGKLVPVLTDWQLPALTVNIAYQSRRHQPAKIRVFTEFLIERFERLGLAR 300

Query: 296 DWK 298
            WK
Sbjct: 301 KWK 303


>gi|331651113|ref|ZP_08352138.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
 gi|331050854|gb|EGI22906.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
          Length = 304

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPVACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|115359447|ref|YP_776585.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|170698004|ref|ZP_02889086.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|172064242|ref|YP_001811893.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115284735|gb|ABI90251.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
 gi|170137066|gb|EDT05312.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|171996759|gb|ACB67677.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 334

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++      + AAP YL+   EP +I++L 
Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVSVAAPAYLEKYGEPQTIEDLS 185

Query: 188 KHNLITF 194
            H  + +
Sbjct: 186 DHKAVNY 192


>gi|326404435|ref|YP_004284517.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325051297|dbj|BAJ81635.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 304

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 142/291 (48%), Gaps = 10/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F      GSF+ AAE      S++SR ++ LE ++G+ LF+R  R L LTE G + +
Sbjct: 1   MRLFGRAVELGSFSKAAEAQGAKVSTVSRAVAALEADLGVALFHRSTRRLHLTEPGEQFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +  +     +P G LR+      G+  +   + +FL LYP ++++L 
Sbjct: 61  AQVQAILRNLDEARDSVAAMQARPQGLLRLNLPGAFGRRHVVPFIPDFLKLYPGLRLELS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+    AD AIR+  P+  S+LI RKL        A+P YL       + ++L 
Sbjct: 121 FTDVRMDLLASGADLAIRI-GPLIDSTLIARKLAGHRRVVCASPSYLAGAPPLAAPRDLL 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +HN + +  L P     F        P  E P    L+ +   +++   + G GIALLP 
Sbjct: 180 RHNALIY-TLQPTDRWFFRRGTEAGEPEEEVPIAGILRSDDSEALLDAALAGVGIALLPV 238

Query: 247 YIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V ++     LVR++ D    + T    +Y  YP   + + K++AF +FI
Sbjct: 239 WLVGEDIARGRLVRLLPDWFSMISTRPGGIYGIYPPHARISPKVRAFLDFI 289


>gi|197294944|ref|YP_002153485.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195944423|emb|CAR57025.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 308

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 142/293 (48%), Gaps = 10/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE
Sbjct: 3   NMELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P 
Sbjct: 63  SGQEFYVRAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P 
Sbjct: 123 VRLNLDLTDRRVDLIGEGFDLVLRIGS-LEDSTLIARPLGAWRMVACASPAYLKRHGMPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L  H  + +G           W   VD  +    +   L  N+   +    + G G
Sbjct: 182 TPADLAGHTCVLYGR-----ERRVGWEFRVDGAVRTFDVQGPLVANNGEVVRDAAIAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IALLP +I+    D+  LV +++  + P  T+   +P+  +    L+ F  F+
Sbjct: 237 IALLPHFIIGAALDSGALVPVLDAYVPPPITLNAVFPQHREGFVTLRTFIGFL 289


>gi|78048556|ref|YP_364731.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036986|emb|CAJ24698.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 309

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 135/290 (46%), Gaps = 20/290 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  VAR GSFT AA QL LSQS++S  +  LET +GI+L  R  R + +TE GS+
Sbjct: 17  NDLQVFVTVAREGSFTRAAAQLGLSQSALSHTVRALETRLGIRLLTRTTRSVAMTEAGSR 76

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    +++     L +   KP+G +RI T        +   L + L  YPD++++
Sbjct: 77  LFETVAPRLEEIDAQLSALTDFRDKPAGTIRITTAGHAADAYIWPALSKVLPDYPDLKVE 136

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D    DI  +  D  IRL   +    +         M   A P Y  +   P    +
Sbjct: 137 LTVDYGLSDIVAERYDIGIRLGDQVAKDMIAVPISPMQRMAVVAVPGYFVHHTIPAVPAD 196

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
           L +HN I     T G L+P    DF      D+   E ++        N   +I++  + 
Sbjct: 197 LAQHNCIGLRLPTHGGLLPW---DF------DKDGREVKVRVDGQWTFNGSSAILRAALA 247

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G G+A LP+ +V ++     L R++ED   P    Y  YP   +++  LK
Sbjct: 248 GGGLAFLPETMVLEHVAAGRLRRVLEDWCEPFAGYYAYYPSRRQSSSALK 297


>gi|215485364|ref|YP_002327795.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312964730|ref|ZP_07778981.1| uncharacterized HTH-type transcriptional regulator yafC
           [Escherichia coli 2362-75]
 gi|215263436|emb|CAS07756.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312290751|gb|EFR18629.1| uncharacterized HTH-type transcriptional regulator yafC
           [Escherichia coli 2362-75]
          Length = 304

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|319794064|ref|YP_004155704.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596527|gb|ADU37593.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 305

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 140/304 (46%), Gaps = 17/304 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  V  SGS + AAE+L +S+  ++R ++ LE   G +L +R  R L+LT  G +
Sbjct: 5   NAMRVFVNVVDSGSLSAAAEKLDMSRPVVTRYVAELEQWTGARLLHRTTRRLSLTAAGEE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +V       Q  ++  +  P G+LRI T     Q  L   + +++ LYP + + 
Sbjct: 65  LLPRCRQVLELAGDMQAAVRHPAEAPQGQLRITTGTSFAQAQLADAIADYVRLYPGVAVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++ +++  +  D AIR    I   +LI R+L T      A+P YLK   +PL + E
Sbjct: 125 LVLLDRTVNLVDERIDLAIRTAAEID-PNLIARRLTTCRSVVCASPAYLKEHGKPLRVDE 183

Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L + N +T   FG  +      +N+    D  P+       +  N   S+M     G+GI
Sbjct: 184 LAQRNCLTHSYFGHSL------WNFTRKADGEPLSVAVNGNVSANDAASLMCLARAGAGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKAR 295
           A+LP Y+      +  LV + ED       +Y  Y         L+   +F+   F +  
Sbjct: 238 AMLPTYLTAALLQSGELVSLFEDCEPQVVGMYAVYTSRKHMPATLRTMLDFLAERFTEVP 297

Query: 296 DWKF 299
            W  
Sbjct: 298 SWDL 301


>gi|331681589|ref|ZP_08382225.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
 gi|315300185|gb|EFU59422.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
 gi|323938750|gb|EGB34996.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1520]
 gi|331081163|gb|EGI52325.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
          Length = 304

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|56698414|ref|YP_168787.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56680151|gb|AAV96817.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 301

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 140/293 (47%), Gaps = 18/293 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L +FL  +PDI + +
Sbjct: 66  YDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLAEFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPKYFEKYGHPQKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ +       +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NEHKLLHYSSQASGNV----WKLTA--PSGEKRQVRTAGWLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            LP Y+  +      ++ED + PS       +Y  YP       K++AF +F+
Sbjct: 239 YLPCYLFAEAMEQ-GLVEDAM-PSLPDEVQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|24111639|ref|NP_706149.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 301]
 gi|30061760|ref|NP_835931.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 2457T]
 gi|110804255|ref|YP_687775.1| putative LysR type transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|24050411|gb|AAN41856.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 301]
 gi|30040002|gb|AAP15736.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 2457T]
 gi|110613803|gb|ABF02470.1| putative transcriptional regulator LYSR-type [Shigella flexneri 5
           str. 8401]
 gi|281599559|gb|ADA72543.1| putative transcriptional regulator LYSR-type [Shigella flexneri
           2002017]
 gi|313646735|gb|EFS11194.1| uncharacterized HTH-type transcriptional regulator yafC [Shigella
           flexneri 2a str. 2457T]
 gi|332754121|gb|EGJ84491.1| hypothetical protein SF274771_3936 [Shigella flexneri 2747-71]
 gi|332764632|gb|EGJ94862.1| hypothetical protein SFK671_0216 [Shigella flexneri K-671]
 gi|332768607|gb|EGJ98788.1| DNA-binding transcriptional regulator LYSR-type [Shigella flexneri
           2930-71]
 gi|333008980|gb|EGK28439.1| hypothetical protein SFK218_0464 [Shigella flexneri K-218]
 gi|333010748|gb|EGK30174.1| hypothetical protein SFK272_0570 [Shigella flexneri K-272]
 gi|333021247|gb|EGK40500.1| hypothetical protein SFK227_0229 [Shigella flexneri K-227]
 gi|333022171|gb|EGK41411.1| hypothetical protein SFK304_0329 [Shigella flexneri K-304]
          Length = 304

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|209884222|ref|YP_002288079.1| transcriptional regulatory protein, LysR family [Oligotropha
           carboxidovorans OM5]
 gi|209872418|gb|ACI92214.1| transcriptional regulatory protein, LysR family [Oligotropha
           carboxidovorans OM5]
          Length = 313

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 124/251 (49%), Gaps = 9/251 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ + +F  V    SF  AA +L  S++++S+ +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEAMAIFAKVVELRSFASAARELKFSKATVSKAVSRLEERLGARLFNRSSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +++    E  + E    +  P G +R+A  +  GQ ++   L EFL  YPD+ 
Sbjct: 66  RALSVRAAQLLADAEAVENEALSQAAAPRGVVRLAVPMTFGQRVIAPLLPEFLAQYPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D  +R+ + +  SSL+ R+L  +  +  AAP YLK    P   
Sbjct: 126 IDLHLSDAMVDLIGEGFDIGVRIAR-LPDSSLVARRLCPMPAYTVAAPSYLKKYGRPTHP 184

Query: 184 QELDKHNLITFG-DLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             L +H   ++     P      N        RP G      L+VN+  +++   + G G
Sbjct: 185 MHLAQHRCFSYAYRTTPDVWHYANAAGEEVSVRPSGP-----LRVNNGEAVIPALLAGYG 239

Query: 241 IALLPDYIVKD 251
           IA LPD+I+ +
Sbjct: 240 IADLPDFIIGE 250


>gi|330811368|ref|YP_004355830.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379476|gb|AEA70826.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 136/289 (47%), Gaps = 8/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GS + AAE L LS+  +SR ++ LE  VG +L +R  R L+LT  G+++ 
Sbjct: 7   MRVFVTVVDLGSQSAAAEHLDLSRPVVSRYLAELEDWVGARLMHRTTRKLSLTAAGTEIL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++       Q  +      P G LRI+ +   GQ  L   + E++  YP + + L 
Sbjct: 67  PRCRQMLELSGDMQAAVSTPDDAPRGMLRISASTSFGQAQLASAMAEYVKRYPGVSVDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  +  D AIR+   +   +LI R+L        A+PHYL+    PL ++EL 
Sbjct: 127 MLDRTVNLVDERIDLAIRMSNDLD-PNLIARRLTVCRSVICASPHYLREHSTPLRVEELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN +T    + K +  F         +  P    +  N   +++Q  + G+G+A+LP Y
Sbjct: 186 RHNCLTHS-YVGKSLWHFE---QDGEQVSVPVQGNISANEASTLLQATIAGAGVAMLPSY 241

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                  N  L+R++         +Y  Y         L++  +F+ LK
Sbjct: 242 QAGAHIKNGELIRLLPHAEPRRMNMYAVYASRKHMPSALRSLLDFLVLK 290


>gi|320197306|gb|EFW71922.1| Transcriptional regulator LysR family, yafC [Escherichia coli
           WV_060327]
 gi|323191547|gb|EFZ76807.1| hypothetical protein ECRN5871_0163 [Escherichia coli RN587/1]
          Length = 304

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|153002620|ref|YP_001368301.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151367238|gb|ABS10238.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 337

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 140/284 (49%), Gaps = 13/284 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS  +  
Sbjct: 11  VFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V   +E+T+ +L      PSG+L+IA  I  G  LL       L  +P I + L+L 
Sbjct: 71  CRKVIAIVESTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAHPQISLNLLLQ 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  IDI  +  D AI +  P+  S+LI R L    M   A+P YL        + ++ KH
Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARHLADWRMLLCASPDYLP-------MHKIFKH 182

Query: 190 --NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L  F  +   C        T  +   E     + VN+  +++Q  + G G A LP+ 
Sbjct: 183 PAELAAFNRINHPCANSETLTHTRSQECFELTSQRITVNNMQALIQLTLDGLGFAALPEP 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            V    ++  LV ++ +    +++VY       K   K+K   N
Sbjct: 243 EVHKYLESGQLVTLLPEWSLNTYSVYSVTSARDKQPAKVKEALN 286


>gi|27382074|ref|NP_773603.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355244|dbj|BAC52228.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 329

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 150/304 (49%), Gaps = 27/304 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V  + S++ AA +L ++ S++S+ I  +E  +G++LF R  R L+LT +G   
Sbjct: 7   EMQVFLRVVEAQSYSEAARRLLMTPSTVSKLIGRIEARLGVRLFERSTRRLSLTSEGRMY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H  +  +  +L+  +  +   +    G +R+ TT+  G   L+  L  F   +P+I + +
Sbjct: 67  HDKSVALLAELDGIERGISRGAAAAGGTIRVNTTVSFGIFGLEPLLPAFWQAHPEIVVDI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+ +D  D A R+  P+Q+S+++ R++  +     A+P Y+    EP  +Q+L
Sbjct: 127 SLSDEIVDMYLDRTDVAFRV-GPLQASAMVARRIGVVKRRIVASPDYINRLGEPKRVQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATV----------DRPIGEPRISCLQVNSYLSIMQYCV 236
            +HN + F         +F   A V          DR I       L  N+  S+ +  +
Sbjct: 186 SRHNCLGF---------NFRRSAPVWPLKESGRIADRAIS----GSLLANNAQSLRRMAI 232

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+A L DY V+D+     LV +++        ++  Y    +   +++AF +F+  +
Sbjct: 233 AGIGLARLADYHVRDDISAGRLVEVLKGTAGDEEQIHALYHGGPRLPFRVRAFLDFMCPR 292

Query: 294 ARDW 297
             D+
Sbjct: 293 LTDF 296


>gi|146308050|ref|YP_001188515.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576251|gb|ABP85783.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 304

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 137/276 (49%), Gaps = 15/276 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G F+ AAE+L LS S +SRQ++ LE  +  +LFYR  R + LTE G 
Sbjct: 4   WEGLDEFVAVAECGQFSAAAERLGLSTSQVSRQVARLEERLQSRLFYRSTRRVALTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + +   +P G LR+   +  G+  +   + +F+  +P +++
Sbjct: 64  LFLQHCQRLQDAREEALRAVGDLGAEPKGLLRMTCAVAYGERFIVPLVNDFMARHPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L N+ +D+  +  D AIRL + +Q S L+  +L    M+  AAP YL+    P S+ 
Sbjct: 124 EIELSNRQLDLLHEGLDLAIRLGR-LQDSRLMAARLAPREMYLCAAPEYLQRYGRPHSLS 182

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           EL +HN LI   D         +W    +    + R+    + NS  +++   + G G+ 
Sbjct: 183 ELARHNCLIGSSD---------HWSFVDNGRETQMRVQGNWRCNSGQAVLDAALRGFGLC 233

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            LPDY V +   +  LV +++    P+  V+  YP+
Sbjct: 234 QLPDYYVLEHLASGALVSLLQQHRPPNTAVWALYPQ 269


>gi|162451523|ref|YP_001613890.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161162105|emb|CAN93410.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 311

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 139/282 (49%), Gaps = 15/282 (5%)

Query: 17  SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76
           +GSF+ AA +L ++ S++SR++  LE E+G+ L  R  R L LT+ G   +     +  +
Sbjct: 16  AGSFSRAARRLGVTPSAVSRRVMRLEQELGVALLARTTRSLRLTDDGQAFYARCVRIVEE 75

Query: 77  LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136
           L      +  +S KP G LR+   + LG++++  +L  F   YPD++I L L ++ +D  
Sbjct: 76  LGEATEAIARASKKPVGLLRVDAPVALGRDVIAPSLPRFAARYPDVRINLTLRDQHVDPV 135

Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGD 196
            +  D  +R+  P+  SSL+ R+L    +   AAP Y+     P +  +L  H+ +  G 
Sbjct: 136 AEGLDLLVRI-GPLGDSSLVARRLGASRLVHCAAPSYIARRGAPATPADLAGHDCV--GY 192

Query: 197 LIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
           L       F +L     A ++ PI  P       N    +    + GSGI  + D++ KD
Sbjct: 193 LRDGRPTGFRFLTGDGDAVLEVPISGP----FHANDVDVLRHLAIAGSGIIAMFDFLAKD 248

Query: 252 ---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 LV ++++  T ++ ++  YP+      K++ F +F+
Sbjct: 249 ALAEGTLVTVLDEFPTTTWPIHALYPKNRHLLPKVRVFVDFL 290


>gi|315616894|gb|EFU97511.1| uncharacterized HTH-type transcriptional regulator yafC
           [Escherichia coli 3431]
          Length = 304

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|301021452|ref|ZP_07185476.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|300398088|gb|EFJ81626.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
          Length = 304

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETINDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|163752174|ref|ZP_02159378.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161327951|gb|EDP99127.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 326

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 139/293 (47%), Gaps = 18/293 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + ++  + +S     AA+QL L  ++++R++  LET +G KL +R AR  +LT +G  
Sbjct: 23  DDIALYIHIVQSRGLATAAKQLRLPAATVTRRLQKLETSIGCKLIHRSARQFSLTAEGEV 82

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   E+    E TQ  L       SGKL++    ++   LLQ     F+  YPDIQ+ 
Sbjct: 83  YYQAFYELVQTFEATQRSLSADLHLLSGKLKVLAPTNISTGLLQPMWSSFIKSYPDIQLD 142

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+N + DI    AD A+R+  P + S L Q+ L  I     A+  YL N   P  + E
Sbjct: 143 LSLNNANQDILAAQADIALRI-GPQKDSQLYQKGLGFIPTVLVASHDYLNNHAAPAQLDE 201

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGSG 240
           L +H +I    +         W  T  R  G      P I+   VN      Q+   G G
Sbjct: 202 LSRHRIIGVNSISV-------WTLT-HRVSGNEVELTPSINTF-VNDIKMASQWACDGIG 252

Query: 241 IALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IALLP   + +D  + NLV+++ D   P   +Y  +P     + K K  R+F+
Sbjct: 253 IALLPISEVYQDLRDGNLVQVLIDWSGPKRELYAVWPSGRLLSAKAKCLRDFM 305


>gi|237807187|ref|YP_002891627.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237499448|gb|ACQ92041.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 309

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 140/290 (48%), Gaps = 12/290 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++  +GS + AA +L+L+  ++S++++ LE  +G++L  R  R   +T +G   
Sbjct: 6   ELEFFSILINAGSLSAAAGELNLTPPAVSKRLAQLEARLGVRLLNRSTRHFNITPEGEIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +   + E+     KP G LRI TT   G+N +   +  FL  YP++++QL
Sbjct: 66  LNRCRQIIQDINAMEQEVLSLRAKPKGLLRINTTPGFGRNYIARAISAFLKQYPEMEVQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD+   D +    D  +R   P   S+++ RK++T      A+P YL+N  +PL   +L
Sbjct: 126 TLDSNQPDPTSGDFDIGVRFGLP-PDSNIVARKIMTNRRFVCASPLYLRNNPQPLVPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            KHN I       K  E  + +    R      +     L  N    +  + + G GI +
Sbjct: 185 AKHNCIVL-----KQDESASGIWRFKRGDSSETVKVRGTLSSNDGEVVANWALEGHGILI 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++ V     +  LVR++ED   P+  +Y  YPE    + K++ F +F+
Sbjct: 240 RAEWDVNKYLQSGRLVRLLEDYELPAADIYVVYPERHYLSAKVRVFIDFL 289


>gi|82542801|ref|YP_406748.1| transcriptional regulator LYSR-type [Shigella boydii Sb227]
 gi|300936079|ref|ZP_07151021.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|81244212|gb|ABB64920.1| putative transcriptional regulator LYSR-type [Shigella boydii
           Sb227]
 gi|300458754|gb|EFK22247.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|309700410|emb|CBI99699.1| LysR-family transcriptional regulator [Escherichia coli ETEC
           H10407]
 gi|320179845|gb|EFW54791.1| Transcriptional regulator LysR family, yafC [Shigella boydii ATCC
           9905]
 gi|332093751|gb|EGI98806.1| hypothetical protein SB359474_2389 [Shigella boydii 3594-74]
          Length = 304

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|188496226|ref|ZP_03003496.1| transcriptional regulator, LysR family [Escherichia coli 53638]
 gi|188491425|gb|EDU66528.1| transcriptional regulator, LysR family [Escherichia coli 53638]
          Length = 304

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++     +  LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIAHGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|78060745|ref|YP_367320.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965295|gb|ABB06676.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 305

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 141/295 (47%), Gaps = 16/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GHEFYARAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GSLEDSTLIARALGAWRMVACASPAYLKRQGTPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
             +L  H  + +G           W   VD   G  R   +Q     N+   +    + G
Sbjct: 180 PADLAGHTCVLYGR-----ERRIGWEFRVD---GAARTFDVQGPLVANNGEVVRDAAIAG 231

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLPD+IV    D+  LV +++       T+   +P+  +    L+ F  F+
Sbjct: 232 LGIALLPDFIVGAALDSGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFL 286


>gi|16128195|ref|NP_414744.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107083|ref|AP_000863.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|157155058|ref|YP_001461373.1| LysR family transcriptional regulator [Escherichia coli E24377A]
 gi|170079839|ref|YP_001729159.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|191167015|ref|ZP_03028837.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|238899601|ref|YP_002925397.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|256024153|ref|ZP_05438018.1| putative DNA-binding transcriptional regulator [Escherichia sp.
           4_1_40B]
 gi|300819822|ref|ZP_07100008.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300949360|ref|ZP_07163372.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300958297|ref|ZP_07170440.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|301028966|ref|ZP_07192128.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|301645477|ref|ZP_07245414.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|307136803|ref|ZP_07496159.1| putative DNA-binding transcriptional regulator [Escherichia coli
           H736]
 gi|309797923|ref|ZP_07692303.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|331640658|ref|ZP_08341805.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
 gi|401473|sp|P30864|YAFC_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator
           yafC
 gi|216646|dbj|BAA02171.1| ORF304 [Escherichia coli W3110]
 gi|1552778|gb|AAB08630.1| hypothetical [Escherichia coli]
 gi|1786401|gb|AAC73313.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4902945|dbj|BAA77879.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|157077088|gb|ABV16796.1| transcriptional regulator, LysR family [Escherichia coli E24377A]
 gi|169887674|gb|ACB01381.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|190902908|gb|EDV62635.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|238862255|gb|ACR64253.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|260450594|gb|ACX41016.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|299878065|gb|EFI86276.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|300315003|gb|EFJ64787.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300451243|gb|EFK14863.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300527580|gb|EFK48642.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|301076266|gb|EFK91072.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|308118463|gb|EFO55725.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|315134893|dbj|BAJ42052.1| putative DNA-binding transcriptional regulator [Escherichia coli
           DH1]
 gi|320201197|gb|EFW75780.1| Transcriptional regulator LysR family, yafC [Escherichia coli
           EC4100B]
 gi|323943433|gb|EGB39584.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|331040032|gb|EGI12240.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
          Length = 304

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|330446602|ref|ZP_08310254.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490793|dbj|GAA04751.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 294

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 140/287 (48%), Gaps = 9/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T A+ +  +  ++++R+I  LE  + I+L  RHAR L+LTE G K
Sbjct: 4   DDLNLFRMVVENGSYTAASRKTQVPVATLTRRIQALEEGLNIRLLNRHARKLSLTEAGQK 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +  +L  T   + E     +GKLRIA   ++ + +LQ  L  F+L +P I IQ
Sbjct: 64  FYHDCAPLLQQLLDTTEHISEECKGAAGKLRIAAPANITKVMLQPLLNAFMLEHPAISIQ 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + N+   +     D   R+  P + S+LI R++  +     A+P YLK   EP   Q+
Sbjct: 124 LYMSNEPDQLDPTDWDVMFRI-GPQRDSTLIARRINEVKDILVASPDYLKKNPEPKHAQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H L+    L+   + + N         G    S L V     + + C  G GI L+P
Sbjct: 183 LHEHTLLKGNPLLRWRLNNHNGETVTINERGRFEASELNV-----VRKACCAGLGITLMP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           D +++       +V+++++       VY  Y        KL+ F +F
Sbjct: 238 DVMLEKYIAAGEIVQVLKNWSANPRDVYLIYNHRDYQPEKLRLFIDF 284


>gi|324111230|gb|EGC05213.1| LysR substrate binding domain-containing protein [Escherichia
           fergusonii B253]
          Length = 304

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAAPPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYIARYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E + S L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVQYS-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|148559785|ref|YP_001259670.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148371042|gb|ABQ61021.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840]
          Length = 308

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 143/296 (48%), Gaps = 21/296 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+  +LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVAHRLVDYTLCLYAHRSYLEENGTPK 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRIS-----CLQVNSYLSIMQYC 235
           S ++L++H LI +       +ED      ++  +   P IS       +V+S L  ++  
Sbjct: 194 SPEDLNRHRLIGY-------VEDL----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAV 242

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 243 RAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 296


>gi|159186098|ref|NP_356365.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141232|gb|AAK89150.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 6/256 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F +VA  GS T AA  L  + S +SR I+ LET +G +L  R  R L LT++G    
Sbjct: 11  VEAFIIVAEKGSMTEAAVALATTASVLSRAITRLETRLGAQLMRRTTRRLNLTDEGRAYL 70

Query: 68  RVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  ++  +  +Q  +    +G +RI+     G + L   L+ F+  YP++QI+L
Sbjct: 71  EQARAAFSMIDDAERAIQGPTGASLTGHVRISVPTTYGHHRLPAMLERFMQAYPEVQIEL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+++D+  +  D AIRL  P+  S L+ RKL    +   AAPHYL+    P  +++L
Sbjct: 131 SITNRNVDLVAEGYDLAIRL-GPLPDSGLVARKLEDASLRLVAAPHYLERAGMPQDVEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
            +H  + F  ++P       WL  VD R +       +QV +  L ++     G GI  +
Sbjct: 190 AEHQCLPF--VMPSTGRCAPWLFHVDGRDLDWTPPGRIQVFDDVLGVVSLAESGLGICQI 247

Query: 245 PDYIVKDNPNLVRIME 260
            D+I++D     R++E
Sbjct: 248 YDFIIRDRVKEGRLVE 263


>gi|330447802|ref|ZP_08311450.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491993|dbj|GAA05947.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 301

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 138/285 (48%), Gaps = 8/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +FY +   GSF+ AAE + L++S +S++I+ LE  +G++L YR  R L LTE G  
Sbjct: 5   NNLLLFYHLIDKGSFSKAAEHIGLTKSVVSKRITALEQALGVQLIYRTTRKLALTEAGDV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    EVY+ ++  +  +       +GK+RI      G+ +L   +  F   YPDI I+
Sbjct: 65  FYHHAREVYNAVQNAEDAMSGLGESLTGKIRITVPTISGELILPEAIAAFSQQYPDIHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+  +  D AIR    +  SS I R+ V        +P YL++   P    +
Sbjct: 125 MDLDNRFVDLVQEGFDIAIR-TGAMPDSSFIARQFVQARWVICGSPSYLESHGVPTQPND 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L KHN + +        E   WL      I   ++      N+  ++    + G G+  +
Sbjct: 184 LTKHNCLGYSFQETGANE---WLIEDKLGIHTVKVKGNFTTNNASALRGAAIHGQGLVYV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P  +V ++    +L+ ++++ +  S  +Y  YP   +   K+K F
Sbjct: 241 PKVLVAEDLHSGSLIEVLDNYVAKSLGIYAVYPYTKQQPMKVKLF 285


>gi|293408297|ref|ZP_06652136.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471475|gb|EFF13958.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 304

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|300311443|ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074228|gb|ADJ63627.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 324

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 130/277 (46%), Gaps = 13/277 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V R+GSF  A  +L +  ++ISR++  LE  +G++L  R  R L +T  
Sbjct: 2   LDLNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +     +     +E     L ES  +P+G LR+A  +D   N     + EF+ LYP +
Sbjct: 62  GREFFERCAPGLEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++ +L++   D+  +  D A R    +  SSL+ RKLV  H+   A+P YL+    P S
Sbjct: 122 QLEFVLNDGRADLIAEGIDLAFR-GGVLPDSSLVARKLVQSHLALIASPRYLERQGTPQS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
           + +L  H  +       +  +   W   ++ P G   +     L VN+    ++    G 
Sbjct: 181 LTDLTAHACLA----TSQAPQHTVW--KLEGPHGPESVKVTPRLCVNTAQGQLRAARAGL 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           GIALLP  +  +   N  LV I+ D    +   Y  Y
Sbjct: 235 GIALLPTMLASEDLRNGTLVNILPDYQRDTMGFYAVY 271


>gi|209917395|ref|YP_002291479.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|256020174|ref|ZP_05434039.1| putative transcriptional regulator [Shigella sp. D9]
 gi|300823392|ref|ZP_07103522.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300926572|ref|ZP_07142358.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|301326092|ref|ZP_07219488.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|331666449|ref|ZP_08367329.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331675866|ref|ZP_08376583.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332281337|ref|ZP_08393750.1| transcriptional regulator [Shigella sp. D9]
 gi|209910654|dbj|BAG75728.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|300417430|gb|EFK00741.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300524010|gb|EFK45079.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300847152|gb|EFK74912.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|324020680|gb|EGB89899.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
 gi|331066294|gb|EGI38172.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331076426|gb|EGI47703.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332103689|gb|EGJ07035.1| transcriptional regulator [Shigella sp. D9]
          Length = 304

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGQRYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|323528034|ref|YP_004230186.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385036|gb|ADX57126.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 296

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 146/289 (50%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F     + +FT AA++L LS+  +SR++  LE  +G+ L  R+ R L +T+ G +
Sbjct: 4   DDMRIFVATVDAHNFTAAAKRLALSKQFVSRRVMALEEALGVPLLVRNTRKLAVTDLGQE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++E  +  +      P G L+++  +  G   L   + +FL  + D++  
Sbjct: 64  FYERAKRILGEVEDAEQAMSLRRAGPRGLLKVSAPMSFGMLHLSPLVADFLREHRDVRFD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D A+R+   +  S+LI +KLV +++ A  +P YL+    P +  +
Sbjct: 124 MELSDRTVDVVGEGFDMAVRI-GVLPDSTLIAQKLVDVNLVACCSPAYLRRRGRPAAPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +H+ + +G           W   VD  +    +   L+ N+   I    V G GI  L
Sbjct: 183 LARHSCLLYGH-----GGVVTWEFAVDGAVKSFEVHGPLRANNGDLIRDAAVAGLGIVRL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD+IV D   +  LV ++++ +     VY  YP+  +++  ++AF +F+
Sbjct: 238 PDFIVADALRSGRLVTVLDEFLASPTGVYAVYPQHRQSSLTIRAFVDFL 286


>gi|260429970|ref|ZP_05783945.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260418893|gb|EEX12148.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 310

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 142/295 (48%), Gaps = 8/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FDW+ L+VF  + R    T A   L + Q++I+R++  LE  +G  LF R A G  LT 
Sbjct: 11  GFDWNDLKVFLALHRMKRMTDAGRVLGVDQTTIARRVKALEAAIGTHLFVRRADGFELTR 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++     E+ H  E    ++    ++ +G++RI     LG   L   L  F    P+
Sbjct: 71  AGLRILPFALEIEHSGEKLHEQISGEDMRLAGRVRIGAPDGLGTFFLPAILTRFQRDNPE 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++  ++   ++      A+ L  P +S  L+ RKL   ++H +A+P YL+    P+
Sbjct: 131 VDVEVVPSSRQFRVAEQEVHLALWLSLP-ESGRLLARKLADYNLHFFASPDYLERHGMPM 189

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           S+ +L  H L+ +  D++      F+        +G  R+     +S  +  +    G+G
Sbjct: 190 SLADLQDHRLVGYIADML------FSPEVRFLEELGLRRLVRFASSSMAAQREAIREGAG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + +LP ++  ++P LV ++ D      TV+    ++ ++  +++A   ++   AR
Sbjct: 244 LGILPRFMALNDPGLVPVLTDRYLLKRTVWIVSHQSTEDLARVRAVSEYLQRAAR 298


>gi|170690456|ref|ZP_02881623.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170144891|gb|EDT13052.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 296

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 145/289 (50%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F     + +FT AA++L LS+  +SR++  LE  +G+ L  R+ R L +TE G +
Sbjct: 4   DDMRIFVATVDAHNFTAAAKRLSLSKQFVSRRVMALEEALGVPLLVRNTRKLAVTELGQE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++E  +  +      P G LR++  +  G   L   + +FL  + D++  
Sbjct: 64  FYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMMHLSPLVADFLREHRDVRFD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D A+R+   +  S+LI +KL  +++ A  +P YL+    P +  +
Sbjct: 124 MELSDRTVDVVGEGFDMAVRI-GVLPDSTLIAQKLFDVNLVACCSPRYLRRRGTPAAPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ + +G           W   VD  +    +   L+ N+   I    V G GI  L
Sbjct: 183 LSRHSCLLYGH-----GGVVAWEFAVDGVLKSFEVQGPLRANNGDLIRDAAVAGLGIVRL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD+IV D   +  LV ++++ +     VY  YP+  +++  ++AF +F+
Sbjct: 238 PDFIVADALRSGELVTVLDEFLPSPTGVYAVYPQHRQSSLTIRAFVDFL 286


>gi|320186404|gb|EFW61136.1| Transcriptional regulator LysR family, yafC [Shigella flexneri CDC
           796-83]
          Length = 304

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PTSLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|320173689|gb|EFW48878.1| Transcriptional regulator LysR family, yafC [Shigella dysenteriae
           CDC 74-1112]
          Length = 304

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|171315750|ref|ZP_02904983.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171099162|gb|EDT43938.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 334

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++      + AAP YL+   EP +I++L 
Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVSVAAPAYLEKYGEPHTIEDLS 185

Query: 188 KHNLITF 194
            H  + +
Sbjct: 186 DHKAVNY 192


>gi|157368915|ref|YP_001476904.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320679|gb|ABV39776.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 303

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 138/292 (47%), Gaps = 20/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GS+T AA++  L +SS+S++IS LE  +G++L  R  R L LT  G +  
Sbjct: 9   MALFALVAECGSYTAAAKRAALPKSSVSQRISQLEQTLGLRLLNRTTRQLNLTFAGERYL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ +++ 
Sbjct: 69  EHCQEMLSAAERADLALQRLRDNPSGRLRISTPAGLGATLLARLAADFQRQYPDVSLEVS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  +  D A+R  KP Q SSLI R+L     +  A+P YL    + +  Q+L 
Sbjct: 129 VSDAMVDMVQEGFDAALRTGKP-QDSSLIGRRLGHAPRYLLASPAYLAQSPQIVDPQQLQ 187

Query: 188 KHNLITFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242
           +H  I         + +  E F W           ++    V   L   + C + G+GI 
Sbjct: 188 QHRCIAHSSWPVWSLRRGDEYFRW-----------QLPMRHVTDNLLYARECAIAGAGIT 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +LP ++ ++      LV ++ +       +Y  YP    N+  L  F + + 
Sbjct: 237 MLPAFLSREVVAQKQLVEVLPEWQAEGNELYLVYPSRKLNSPALACFIDVVL 288


>gi|313105919|ref|ZP_07792181.1| hypothetical protein PA39016_000120006 [Pseudomonas aeruginosa
           39016]
 gi|90569603|gb|ABD94674.1| putative LysR binding protein [Pseudomonas aeruginosa]
 gi|310878683|gb|EFQ37277.1| hypothetical protein PA39016_000120006 [Pseudomonas aeruginosa
           39016]
          Length = 296

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 148/296 (50%), Gaps = 8/296 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V R  S   AAE+L +  S++SR++S LE E+G++L  R  R L +TE G+ 
Sbjct: 5   DDMEIFVEVVRQNSLRKAAEKLKIPVSTLSRRLSVLEKEIGVRLIRRTTRTLEVTELGNA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  +       L + +  PSG LR++  +D     +   + ++  +YPDI  +
Sbjct: 65  YYQRCKPIVDEARVANQSLSDMASAPSGLLRVSMPVDFSIAYIMPLVIKYSEIYPDIDFE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D++ +  D AIRL +  QSSSLI R L+TI  + YA+P YLK    P S  E
Sbjct: 125 FDLTPRQVDLTREPLDVAIRLGEQ-QSSSLIARHLITIPRYLYASPEYLKVNGYPSSPSE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +      P+  + ++ L   +    E +   L +NS   +    ++G GIA++ 
Sbjct: 184 LHSHKCLIMN--TPQERKYWSLLGKDEEAEVELKGRFL-MNSIGMLKNLAIMGEGIAMIA 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +V+    +  LVR++ +      +VY      L    K+ +F +F++   R+ K
Sbjct: 241 PGVVRKEASDGELVRVLPEWSGKPLSVYALTENRLSPV-KISSFIDFLYDGLRNEK 295


>gi|27378359|ref|NP_769888.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27351506|dbj|BAC48513.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 297

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 140/286 (48%), Gaps = 19/286 (6%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V  SGSF  A  QL LS+S+IS+ I+ LE  +G++L  R  R  + TE G +       +
Sbjct: 3   VVESGSFAEAGRQLRLSRSAISKYIADLEESLGVQLLNRTTRHASPTENGQRYFERAVVI 62

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
             ++E     + ++   P G LR+   +  G   L   L +F+  Y ++Q+Q++L +  +
Sbjct: 63  LSEIEAADQAVAQAQSAPRGLLRVNAPMSFGTMRLGPVLADFMARYGELQLQIVLSDDLL 122

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D   D  D  +R+ + ++SSSLI RK+  +     A+P YL     P   Q+L +H  +T
Sbjct: 123 DPVQDGFDVTLRIAE-LESSSLIARKITPVARMICASPDYLARHGTPKHPQDLREHASLT 181

Query: 194 FGDLIP------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +G L+          +  +W+        +P  S L VN+   +    + G G+ALLP++
Sbjct: 182 YGFLLTGNQWKLTGSDGDHWI--------QPAWS-LCVNNAEVLRDVAIKGRGLALLPEF 232

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  D      L+ +++D   P   +Y  YP     + K++ F +F+
Sbjct: 233 IAADALRKGELLTVLDDYSAPPLALYAVYPPTRHLSVKVRLFIDFL 278


>gi|238758500|ref|ZP_04619676.1| Transcriptional regulator [Yersinia aldovae ATCC 35236]
 gi|238703200|gb|EEP95741.1| Transcriptional regulator [Yersinia aldovae ATCC 35236]
          Length = 317

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 138/258 (53%), Gaps = 9/258 (3%)

Query: 1   MSFDWDKLR-------VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH 53
           MS+D D ++       VF  VA +GSF+ AAE+LHL++S++++ I+ LE ++G+ LF+R 
Sbjct: 1   MSWDSDVMKSELNSIPVFVTVAEAGSFSRAAEKLHLTRSAVTKIIARLEAKLGVALFHRT 60

Query: 54  ARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLK 113
            R L++T++G+  H       +++   +  L +   +  G+LR++  +  G   +   L 
Sbjct: 61  TRSLSMTDEGTLYHEYCQRALNEICLVEEILNDGKFEVCGRLRVSVPVLFGHLCIAPLLT 120

Query: 114 EFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
            F   +P +++++   ++ +D+  +  D AIR+     SSSLI RKL    M   AAP Y
Sbjct: 121 LFADTHPKLKLEISFSDRAVDLVEEGFDLAIRIGALPDSSSLIARKLSEHRMIYCAAPDY 180

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
           L  C EP + +EL+ H  + +  +  + ++ + +             + L ++   ++  
Sbjct: 181 LNRCGEPQTAEELNLHAAVAY--IRSRKVQRWQFRDKTGTKKEFIPNAKLMMDDMQAVTN 238

Query: 234 YCVLGSGIALLPDYIVKD 251
             V G+GIA LP ++V++
Sbjct: 239 AAVSGAGIAWLPYWLVRE 256


>gi|170681248|ref|YP_001742331.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|218698845|ref|YP_002406474.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|170518966|gb|ACB17144.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
 gi|218368831|emb|CAR16579.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
          Length = 304

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|86157173|ref|YP_463958.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773684|gb|ABC80521.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 306

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 130/270 (48%), Gaps = 9/270 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F     +GSF  AA +L ++ S++SR+++ LE  +G  L  R  R L+LT+ G   H
Sbjct: 7   IQLFAATVEAGSFAAAARRLRVTPSAVSRRVAQLERALGAPLLARTTRALSLTDDGRAFH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L   Q  +  S+ +PSG LR+   + LG+ LL   L   L  +PD++I L 
Sbjct: 67  DRCLRILEELREAQDAIARSAGRPSGLLRVDAPVGLGRALLAPTLPRLLDRHPDLRIALT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N  ID   +  D  +R+ + +  S+LI R+L    +   AAP YL+    P +  EL 
Sbjct: 127 LRNAFIDPVAEGIDVTVRMGR-LSDSTLIARRLGERRILVCAAPAYLRRHGSPRTPHELA 185

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +  D  P          T D  +  P       +   ++ +  V G GI  L D
Sbjct: 186 RHACLGYLRDGRPDPYRFVAGEGTHDVEVDGP----FHSDDAEALREAAVAGKGIVALFD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           ++V D   +  LV+++ED     F V+  Y
Sbjct: 242 FVVADALASGKLVQVLEDHPLAPFPVHALY 271


>gi|15799884|ref|NP_285896.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 EDL933]
 gi|15829458|ref|NP_308231.1| transcriptional regulator [Escherichia coli O157:H7 str. Sakai]
 gi|168758941|ref|ZP_02783948.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168765058|ref|ZP_02790065.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168769971|ref|ZP_02794978.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168776188|ref|ZP_02801195.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168782933|ref|ZP_02807940.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168789651|ref|ZP_02814658.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|168800390|ref|ZP_02825397.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|195938580|ref|ZP_03083962.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807266|ref|ZP_03249603.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208812691|ref|ZP_03254020.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208821909|ref|ZP_03262229.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209397859|ref|YP_002268811.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217324524|ref|ZP_03440608.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254791335|ref|YP_003076172.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223761|ref|ZP_05938042.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255829|ref|ZP_05948362.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281025|ref|YP_003497843.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|12512936|gb|AAG54504.1|AE005196_2 putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EDL933]
 gi|13359660|dbj|BAB33627.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768453|gb|EDU32297.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188999584|gb|EDU68570.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189354341|gb|EDU72760.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189361022|gb|EDU79441.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189365066|gb|EDU83482.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189370769|gb|EDU89185.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|189377333|gb|EDU95749.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|208727067|gb|EDZ76668.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208733968|gb|EDZ82655.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208742032|gb|EDZ89714.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209159259|gb|ACI36692.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209745544|gb|ACI71079.1| putative transcriptional regulator [Escherichia coli]
 gi|209745546|gb|ACI71080.1| putative transcriptional regulator [Escherichia coli]
 gi|209745548|gb|ACI71081.1| putative transcriptional regulator [Escherichia coli]
 gi|209745550|gb|ACI71082.1| putative transcriptional regulator [Escherichia coli]
 gi|209745552|gb|ACI71083.1| putative transcriptional regulator [Escherichia coli]
 gi|217320745|gb|EEC29169.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254590735|gb|ACT70096.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|290760898|gb|ADD54859.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190271|gb|EFW64921.1| Transcriptional regulator LysR family, yafC [Escherichia coli
           O157:H7 str. EC1212]
 gi|320638228|gb|EFX07956.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. G5101]
 gi|320643612|gb|EFX12756.1| LysR family transcriptional regulator [Escherichia coli O157:H-
           str. 493-89]
 gi|320650348|gb|EFX18825.1| LysR family transcriptional regulator [Escherichia coli O157:H-
           str. H 2687]
 gi|320654623|gb|EFX22624.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660191|gb|EFX27701.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320665442|gb|EFX32504.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. LSU-61]
 gi|326338816|gb|EGD62635.1| Transcriptional regulator LysR family, yafC [Escherichia coli
           O157:H7 str. 1044]
 gi|326342393|gb|EGD66173.1| Transcriptional regulator LysR family, yafC [Escherichia coli
           O157:H7 str. 1125]
          Length = 304

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPVACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|227818763|ref|YP_002822734.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36959018|gb|AAQ87443.1| Transcriptional regulators, LysR family [Sinorhizobium fredii
           NGR234]
 gi|227337762|gb|ACP21981.1| putative LysR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 297

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 21/300 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V+   SFT AA++L +S++++  Q+  LE  +GI+LF R  R + LTE G+ 
Sbjct: 8   DGIAAFLTVSTHLSFTKAADELGMSRATVGAQVRQLEDRLGIRLFQRSTRKVVLTEAGAA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S +  ++   +        +  G+LR++   DLG  ++   + EFL L P + ++
Sbjct: 68  YREALSGILPQIREAERAATSFQKEAVGRLRVSAPPDLGHLVIVPAVSEFLKLNPAVSLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +++  D  D AIR R  +   +LI R+L T  +   A+P Y+     P S  +
Sbjct: 128 LDLSHRAVNLVEDGFDLAIRGRLEVD-INLITRQLATSQIVICASPAYIDEHGAPESPHD 186

Query: 186 LDKHNLITFGDL-------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L  H+ + F +L         +  E+F            P +  L++N  L +    +LG
Sbjct: 187 LAHHSCLHFAELRWGRIWPFSRNGEEFRI----------PIVPRLELNHSLGLRDAALLG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI LLPD+IV ++     L+R++ D    +  +   YP       K++ F +F+  K R
Sbjct: 237 VGIVLLPDFIVGEDLRQGRLIRLLPDWHISTIQLQAVYPANRHIAVKVRRFVSFLAGKLR 296


>gi|15966724|ref|NP_387077.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307315818|ref|ZP_07595329.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307322584|ref|ZP_07601925.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15075996|emb|CAC47550.1| Transcription regulator LysR family [Sinorhizobium meliloti 1021]
 gi|306891775|gb|EFN22620.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306898527|gb|EFN29203.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 315

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 138/291 (47%), Gaps = 10/291 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F WD L+ F  VAR+G  + AA +L  S +++SR+I  LE  + +KLF R+ RG  LT 
Sbjct: 4   NFTWDDLQFFLAVARTGQLSTAARRLRTSHATVSRRIDRLEFALKVKLFERNPRGYVLTT 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  + E  Q+++ +      G +R++T    G   L   L EF   YP+
Sbjct: 64  MGQRFVETAERMERETEQLQLDISDGMTAQRGVVRLSTLEGFGNFFLADRLGEFAERYPN 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+   + + +S   AD A+ L  P ++ +     L    +H Y A  YL       
Sbjct: 124 ISLELVAIQQIMSLSRKEADIAVALAAP-KAGAYHAEVLTPYTLHVYGARSYLAGQPPIR 182

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           +  +L  H  + +  D+I       ++L  +     +P +    Q +S L+ ++    G 
Sbjct: 183 TRSDLGSHRFVGYIDDMI--FTPGLDYLGEI-----QPGLRAHFQSSSILTQLKAVRQGL 235

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ +LP ++ KD PNL  ++ D I    T +      L    +++A R+F+
Sbjct: 236 GLCVLPHFMAKDEPNLEIVLPDEIELKRTYWLICHRDLIAIPRVRAVRDFL 286


>gi|300704140|ref|YP_003745742.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299071803|emb|CBJ43129.1| Transcriptional regulator, LysR family [Ralstonia solanacearum
           CFBP2957]
          Length = 301

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ LR+F  VAR G+   AA +L ++QS+ISR I+ LE  +   +F R  +GL +T +G
Sbjct: 7   NWNDLRIFLEVARCGTLGGAARRLKVNQSTISRHITQLEETINAPVFERDNQGLHITARG 66

Query: 64  SKLHRVTSEVYH--KLETTQIELQE----SSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             L      + H   +E   + L E    S  +PSG +R+ T   +    L G    F  
Sbjct: 67  RDL------IQHVEAMEANAVALSEALGGSHKEPSGAVRLGTMEGIASLYLAGACVHFNQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P I I+L+   + + ++   AD  +    P +  SL    +    +H YA+  YL + 
Sbjct: 121 RFPKISIELVTTTQQMHVNQREADIFLSFFPP-EGKSLAVSPIGAFSLHLYASASYLASH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P    +LD H   ++ D + + ++   WL   D  I  PR++  Q +S ++ M   V 
Sbjct: 180 GTPEEPADLDNHRFASYVDDLIQ-LDTVRWL---DEVISHPRLA-FQSSSMIAQMFAAVD 234

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+ +LP +   +   L+R++ED +    T++      L+   ++KA   F+
Sbjct: 235 GGGVVMLPSFARAERFGLIRLLEDQVRVRRTIWMTVHRDLQYLPRIKAVTRFL 287


>gi|107025370|ref|YP_622881.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|105894744|gb|ABF77908.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
          Length = 334

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 143/287 (49%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP +I +L 
Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVTVASPDYLERHGEPQTIDDLG 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +     +     +W   +D    E ++   + VN   + +   + G G+   P 
Sbjct: 186 QHKAVNY--FSSRTGRTIDWTFLIDGKEVEMKMEGIVSVNDADAYVTCGIEGFGLIQPPL 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  +     L  ++  V      V   YP +   + K++ F ++I
Sbjct: 244 FMVLPHLREGRLKEVLPGVKPLPMPVSVVYPHSRHLSPKVRVFVDWI 290


>gi|90580491|ref|ZP_01236297.1| transcriptional regulators, LysR family protein [Vibrio angustum
           S14]
 gi|90438400|gb|EAS63585.1| transcriptional regulators, LysR family protein [Vibrio angustum
           S14]
          Length = 299

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 141/261 (54%), Gaps = 8/261 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V ++GSF+  A + + +Q++IS++I+ LE ++  KL  R +R L LTE G++ +
Sbjct: 7   MRAFIRVVQTGSFSATAREQNTTQATISKKIAALEHKLEGKLLTRSSRDLALTEVGAEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+  +  ++     P G ++IA  I  G   +   + EFL  YPDI + L 
Sbjct: 67  ERCVAIISELDEAESNVRAHRALPQGLIKIAAPITFGNIFIAPIISEFLARYPDISVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +K +DI  +  D AIR R+ ++ SSLI R+L        A+  Y+    EP++ ++L+
Sbjct: 127 LSDKHVDIISEGVDVAIRARE-LEDSSLIARRLFDNPNILVASSAYIAKYGEPVTPEDLN 185

Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +HN I +   +   M ++N+    + + +        + +S  +I++  + G GIALLP 
Sbjct: 186 QHNCIIYS--LSSTMNNWNFYNKKIKKSVSVS--GNFKSDSCDAILRSVLDGVGIALLPV 241

Query: 247 YIVKDNPNLVRIMEDVITPSF 267
           ++V +  N  R+ +  + PS+
Sbjct: 242 WMVDNEINAGRLKQ--LMPSY 260


>gi|323493398|ref|ZP_08098520.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323312221|gb|EGA65363.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 305

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 149/289 (51%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + VF  V  SGSF+ AA++L++++S++S++I+ LE E+GI+L  R  R L+LTE G 
Sbjct: 4   FSSIPVFVSVVESGSFSAAADKLNITKSAVSKRITHLEEELGIRLINRTTRKLSLTEAGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +   ++  +  +     + E   +P GKLR+   +  G   +   + EFL LYPD++I
Sbjct: 64  RYYEYVAQSLNLAQQGIDAVSELQGQPRGKLRVTAPMSFGVLHVAPLIAEFLELYPDVEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D+  +  D  IR+   +  S+L+ ++L        A+P Y++    P    
Sbjct: 124 DLQLEDQMVDLVQESFDIGIRIGH-LPVSNLVAKRLAPCLSVLCASPGYVERYGVPQQPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +           N      R +  P+   L VN+  +I +  + G+GI  L
Sbjct: 183 DLSQHSCLQYSYYRGGTEWSLNSAGNEYRVV--PK-GPLSVNNSEAIRRAVLEGAGIGNL 239

Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +IV  +    R   ++ D   P+  +Y  +P+      K++AF +FI
Sbjct: 240 PTFIVAKDIQAGRLQVLLNDYHLPNHAIYAVFPQRKHMPLKVRAFLDFI 288


>gi|254249791|ref|ZP_04943111.1| hypothetical protein BCPG_04665 [Burkholderia cenocepacia PC184]
 gi|124876292|gb|EAY66282.1| hypothetical protein BCPG_04665 [Burkholderia cenocepacia PC184]
          Length = 335

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 144/287 (50%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 8   MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 68  ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++  +     A+P YL+   EP +I +L 
Sbjct: 128 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLLECVTVASPDYLERHGEPQTIDDLG 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +     +     +W   +D    E ++   + VN   + +   + G G+   P 
Sbjct: 187 QHKAVNY--FSSRTGRTIDWTFLIDGKEVEMKMEGIVSVNDADAYVTCGIEGFGLIQPPL 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  +     L  ++  V      +   YP +   + K++ F ++I
Sbjct: 245 FMVLPHLREGRLKEVLPGVKPLPMPISVVYPHSRHLSPKVRVFVDWI 291


>gi|89093661|ref|ZP_01166608.1| Putative transcriptional regulator, LysR family protein
           [Oceanospirillum sp. MED92]
 gi|89082057|gb|EAR61282.1| Putative transcriptional regulator, LysR family protein
           [Oceanospirillum sp. MED92]
          Length = 284

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 10/241 (4%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            VA + SFT AA+ L +S + +SRQIS LE  + +KLFYR  R +T+TE G   +     
Sbjct: 2   AVAETSSFTSAAKLLGISTAQVSRQISELEDRLAVKLFYRTTRKVTITEAGQVYYHHCKP 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +   LE  +  + +    P GKLR+      G++ +   + EF+  YP +++++   N+ 
Sbjct: 62  LIEGLEEAERAITQHQTVPKGKLRMTAPTTFGESKIAPLVSEFIAKYPALEVEIHFTNQK 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           +D+  +  D AIRL K ++ SS++ ++L +  +    +P YL     P  IQELDKHN +
Sbjct: 122 VDLVKEGYDLAIRLGK-LEDSSMMAKRLASRKLQVCGSPDYLAKHGTPHLIQELDKHNCL 180

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
             G L      +F W           R+   ++ NS L++    + G G+  LPDY ++ 
Sbjct: 181 -LGTL------EF-WRFQESGQERNIRVKGNIRFNSGLALTDAALKGLGLVQLPDYYIQQ 232

Query: 252 N 252
           +
Sbjct: 233 H 233


>gi|311103973|ref|YP_003976826.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758662|gb|ADP14111.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           25 [Achromobacter xylosoxidans A8]
          Length = 311

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 143/304 (47%), Gaps = 24/304 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ AA  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLYYFSQVVEQGGFSAAARALDIPKSRLSRRISHLEESLGVRLLQRTTRRLRLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+          +++   +P+G + ++  + + Q++L   L EFL  +P + 
Sbjct: 63  ERYLHYCREMAASARAADDAMRQLQAEPTGPVIVSCPVSIAQDVLSPLLPEFLDAWPAVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++ N+ +D+  +  D A+R+R  + + + L+ R   T      A+P YL+    P +
Sbjct: 123 VQLLVTNRRVDLIREGVDLALRVRTKLDTDAELVVRHFGTARGTLVASPSYLQRHGTPDT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235
            Q+L  H  ++F D       +  W    D+  GE       P++SC   N ++ + +  
Sbjct: 183 PQDLATHTTLSFSD----PQNEVRWPLRNDK--GEEVHIELKPQLSC---NDFIVLTEAA 233

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291
           V G GIALLP     +      LV+++    +P   V+  YP      G + A R  + F
Sbjct: 234 VRGRGIALLPSIATHEQLRRGQLVQVLPQWQSPEGIVHCIYP---SRRGMMPAVRALLDF 290

Query: 292 LKAR 295
           L  R
Sbjct: 291 LSER 294


>gi|300715427|ref|YP_003740230.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299061263|emb|CAX58372.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 304

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 142/301 (47%), Gaps = 23/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L +F  V  SGSF+ AAEQL ++ S++SR +  LET++G++L  R  R + LT
Sbjct: 1   MKANSEELAIFVAVVESGSFSRAAEQLDMANSAVSRAVKKLETKLGVELLTRTTRQVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    V  ++   + EL ES   P G LRI     +  +LL   +K +   YP
Sbjct: 61  QEGDVYFRRVQSVLQEMAAAENELMESRQMPQGLLRIDAATPVVLHLLMPMIKPYRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P YL+    P
Sbjct: 121 EVTLSLVSSETFINLIERKVDIAIRAGN-LTDSSLRARPLFTSYRKIVASPDYLQQHGIP 179

Query: 181 LSIQELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            S Q+L  H  + F + +     P    D         P           NS  +I Q C
Sbjct: 180 HSCQDLAGHVCMGFVEPLSLNRWPIAKADGQLYDITADPTS---------NSGETIKQLC 230

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNF 289
           ++G+GIA L DY++        LV ++ D I P    F   +    A+    ++++F +F
Sbjct: 231 LIGNGIACLSDYMIDREIREGTLVELLADKILPIEMPFNAVYYSDRAVST--RIRSFIDF 288

Query: 290 I 290
           +
Sbjct: 289 L 289


>gi|33591652|ref|NP_879296.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33571295|emb|CAE44764.1| probable LysR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332381072|gb|AEE65919.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 328

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 140/296 (47%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AA+ LH+S++S+++ +  LE  + ++L  R  R +  T  G+
Sbjct: 4   FDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNATADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   LE  +  L  +S  P G+LR+         +L   L  F   YPDI +
Sbjct: 64  AYYERVQQLLADLEDAETSLSGASATPRGRLRVDVPSPFASTILVPALPAFQARYPDILL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++++D+  +  DC IR  + I + SL  R +  + +  YAAP YL     P    
Sbjct: 124 HLGVSDREVDLIDENVDCVIRGGQ-ISNLSLAARHVGDLQLGVYAAPGYLARAGVPAHPG 182

Query: 185 ELD--KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL   +H ++ F       L P  M+  +    V    G   +   + N+YL+     + 
Sbjct: 183 ELQDARHRIVGFSWSRARRLFPCAMQRADERIEV---AGRHALLLDEGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  +P Y+ +   +   L+R+  D       +Y  YP+    + KL+AF ++I
Sbjct: 237 GMGVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHVSAKLRAFIDWI 292


>gi|218438460|ref|YP_002376789.1| LysR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218171188|gb|ACK69921.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 7424]
          Length = 294

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 12/276 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ LR F  V + G F  AA Q++LS+S +S+ +  LE ++G++L  R  R +T T  GS
Sbjct: 4   FESLRAFTEVIKGGGFAAAARQMNLSRSMVSKLVMNLENDLGVQLLLRTTRRVTPTPTGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  Q+ + +   +P G L++   +  G   L   + +F+L YPD+Q+
Sbjct: 64  AFYERCVTILAELEEAQLAVSQLHTEPKGLLKVNAPMSFGTLHLAPAIADFMLRYPDLQV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L+++ ID   +  D  +R+ KP +++ LI   L+ +     AAP YLK    P    
Sbjct: 124 QLTLEDRFIDPVAEGFDVTVRICKPFKAAGLIVHPLMKVKQVLCAAPSYLKKRGTPTHPH 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGI 241
            L +H+ + +G           W  T+    G+  I+    L  N+  ++    + G G+
Sbjct: 184 HLREHSCLHYGYF----STGNQW--TLSGAEGDYTIAISGALSSNNGEALKWAGIKGLGV 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
             LP +IV D     +LV ++ D      +VY  YP
Sbjct: 238 VFLPTFIVGDELKQGSLVEVLSDYSVGELSVYVVYP 273


>gi|83954563|ref|ZP_00963274.1| Putative transcriptional regulator, LysR family protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83840847|gb|EAP80018.1| Putative transcriptional regulator, LysR family protein
           [Sulfitobacter sp. NAS-14.1]
          Length = 289

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 134/279 (48%), Gaps = 17/279 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA + SFT AA  L +S + +SRQ+  LE  +  KLFYR  R +T+TE 
Sbjct: 2   LSWEGVSEFVAVAEAQSFTAAANSLGISTAQVSRQVGALEARLDTKLFYRTTRKVTITET 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    +V   L   +  + +    P G+L +   +  G+N +   + +F+  YPD+
Sbjct: 62  GQVYYNHCRQVLDGLAEAERAITDLHQSPKGRLNLTAPVTYGENRIAPLVNDFVRRYPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  AAP YL     P +
Sbjct: 122 EVNLRLTNQLLDLVAESYDLAIRLGE-LEDSSMMAKRLASRRHYTCAAPEYLSAHGTPHT 180

Query: 183 IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           + ELD +N +  T G           W           R+   L+ NS  S++   +   
Sbjct: 181 LSELDGYNCLQGTLG----------YWRFQEKGTTRHIRVKGNLRCNSGASLVDAALKNL 230

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           GI  LPDY V+       L+ +++    P   ++  YP+
Sbjct: 231 GIIQLPDYYVEAELRAGRLIPVLDSYRAPDDGIWAIYPQ 269


>gi|167901689|ref|ZP_02488894.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 305

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 138/295 (46%), Gaps = 18/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LRVF  +A  G FT AA  L +S S ++R ++ LE  +G +L  R  R L+LTE G 
Sbjct: 4   FQSLRVFVKIADLGGFTRAASALDISNSVVTRALAELEAHLGTRLLNRTTRSLSLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++  +L+  +  +   + +PSG LRI   +  G N L   L+ +   +P I  
Sbjct: 64  VYLEKARQILVELDDAKEMVAAGNREPSGTLRIVAPVVFGLNSLAPLLQSYSARFPKIVT 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D+  +  D  I + K ++SSS++ R L T +    AAP YL+    P  ++
Sbjct: 124 DLTLLDHQVDLVAEGFDVGIMVFKQMRSSSIVTRHLTTENWIVCAAPSYLEKHGVPSRVE 183

Query: 185 ELDKHNLITFGDLIPK------CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++  H  ++    +P       C    +  A   +P+          N+   + +  +LG
Sbjct: 184 QISHHVCLS----LPADHWGVDCTFTRSGGAACSQPLNR-----FVANNIEMLRRLAILG 234

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+A LPDY++K +     LV +  D   P F ++  YP       K++ F + I
Sbjct: 235 MGVATLPDYLIKGDITCGRLVHLFSDRRHPKFDIHVAYPSRRYLAAKVRTFVDHI 289


>gi|323494674|ref|ZP_08099777.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323311107|gb|EGA64268.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 289

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 147/292 (50%), Gaps = 15/292 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + +SR+IS LE  + +KLF R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAETQSFTAAASKLVTSVAQVSRRISSLEERLAVKLFNRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P G L++   +  G+  L   L +FL  +P + 
Sbjct: 63  QVYYQQCKHLVEGLELAELAVTQMQSTPKGLLKVTAPVTFGEQNLAPLLHQFLEQHPQVD 122

Query: 124 IQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L+L N+ +D I M + D AIRL + +Q SSLI ++L +  ++  A+P YL    EP +
Sbjct: 123 LDLMLTNQKLDLIEMGF-DVAIRLGR-LQDSSLIAKRLSSRQLYVCASPDYLDRFGEPHT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGI 241
           + EL  H  +  G +      D    A  ++ I    RI C   NS  +++     G G+
Sbjct: 181 LSELSHHQCLV-GSVDYWRFRD----AKSEKSIRISGRIHC---NSGYALLDAAKRGLGL 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPD+ V+   D   LV ++ +       ++  YP+    + K++   +F+
Sbjct: 233 VQLPDHYVQQALDEGELVEVLTEYRDEREGIWALYPQNRNLSPKVRLLIDFL 284


>gi|153831529|ref|ZP_01984196.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148872039|gb|EDL70856.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 302

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 147/286 (51%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGRRYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP I++ L 
Sbjct: 67  EYASQAVNLAQQGVDAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPKIEVDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D+     D  IR+ + + +S+L+ ++L        A+P YL+    P    +L 
Sbjct: 127 LEDAMVDLVEQGFDLGIRIGE-LATSNLVAKRLAPCKSVLCASPAYLEEFGVPTKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +     +   ++ ++ + +     P+ + + VN+  +I Q  + GSGIA LP +
Sbjct: 186 THNCLRYSYF--RGGVEWMFINSGNEYKVLPKGNFV-VNNSEAIRQLLLRGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   +    NL  +ME+   P   +Y  +PE      K++ F +FI
Sbjct: 243 IAAKDFAAGNLKPLMEEFSLPEHAIYAVFPERKHMPLKVRVFIDFI 288


>gi|270263398|ref|ZP_06191667.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042282|gb|EFA15377.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 295

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 146/298 (48%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V  SGSF+ AAE+L  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVESGSFSRAAERLEQANSVVSRTVKKLEAKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R   ++   +   +  L ES  +P G LRI     +  ++L   + EF   YP
Sbjct: 61  QEGENYFRQVQKILSDMAAAENTLMESRRRPQGLLRIDAATPVVLHVLTPLVAEFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR+ + +  S+L  RKL+T +    A+P YL     P
Sbjct: 121 EMSLSLVSSENFINLIERKVDIAIRVGE-LSDSTLKARKLMTSYRRVLASPAYLAQYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +++ L++H  I F DL P       W LA  D    E     L  NS  +    C+ G+
Sbjct: 180 QTVEALERHCCIGFNDL-PSLNR---WPLACTDGRQLEI-TPGLTTNSGETQRHLCLHGN 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D+++  +       P LV+    V  P   VY+    A+ N  +L++F +F+
Sbjct: 235 GIACLSDFMIDADIARGNLVPILVKETLPVAMPINAVYYS-DSAVSN--RLRSFIDFV 289


>gi|218509705|ref|ZP_03507583.1| transcriptional regulator, LysR family protein [Rhizobium etli
           Brasil 5]
          Length = 305

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 145/297 (48%), Gaps = 14/297 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA   SF  AA+ L +S  ++SR +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEGLAMFAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +Y + E  +   +E + +P G +R+A  +D G   L   L +F  L+P+I 
Sbjct: 66  LRLVDSAARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEIS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +  +DI  D  D A+R+   +  SSL+ R+L  +     AAP YL     P   
Sbjct: 126 IDLHMSDAVVDIVGDGFDAALRIAV-LPDSSLVARRLTPVDRFILAAPAYLDRHGVPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239
           +EL  H+ + +     +  +D   L   +   G+  +      L+  +  +++   + G 
Sbjct: 185 RELMAHHCLGYAY---RARQDVWRLRNGE---GKEEVIVPSGSLRATNSQALVPMALRGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  LP+++  D   +  L  I+ D   P+  +YF  P A     K++   +F+  +
Sbjct: 239 GIIELPEFLAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLSDFMMAR 295


>gi|330969973|gb|EGH70039.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 299

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 147/290 (50%), Gaps = 13/290 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V   GSF  AAE L +S+++ISR +S LE  +G +L +R  R L+LT++G + 
Sbjct: 6   EMQVFCTVVDKGSFVGAAEPLGMSKAAISRYVSTLEERLGARLLHRTTRRLSLTDEGRQF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    EV   ++  +  +  +S + SG LR+   +  G   L     +F+  YP +++++
Sbjct: 66  YHQAREVLAMMDEAEKAVSSASPEASGVLRVNAPVSFGVLHLAPIWADFMSAYPKVELEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D A+R+ + + +SSL+ R+L +  M   A+P YL +      + ++
Sbjct: 126 SLSDRLVDLVDEGIDAAVRIAR-MDNSSLVGRRLASTRMCLCASPAYLASHAPIEKLSDV 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +H ++ + +        F      + P G   +   S ++ N+  +     + G GI+L
Sbjct: 185 AEHGVVAYSNFASGTEWQF------EGPEGSESVHTRSVVRCNNGDTCRAITLAGGGISL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P ++V  +    +LV I+ +  +    +Y  YP       K+++  NF+
Sbjct: 239 QPSFMVAQDLRRGDLVEILPEYQSVELGIYVVYPTRKHLPAKVRSLINFL 288


>gi|293394338|ref|ZP_06638638.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291423316|gb|EFE96545.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 306

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 142/281 (50%), Gaps = 13/281 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + + VF     +G+F  AA +LHLS+S++ + I+ LE  +G++LF+R  R  +LT
Sbjct: 1   MSDRLNGISVFVTAVEAGNFALAASRLHLSRSAVGKTIARLEQRLGVRLFHRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+  +        ++ T +  L+    + SG+LR++  +  G+  +   L E    +P
Sbjct: 61  DDGALFYERCLRALEEIRTAETLLESGKRQVSGRLRVSMPVLFGRLCIAPILTELAREHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +++ +D+  D  D  +R      S+ L+ R+L   HM   A+P YL  C EP
Sbjct: 121 QLELELSFNDRLVDMIEDGFDLVVRNGALPDSARLVARRLGNHHMAFCASPAYLARCGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236
            ++  L +H+ + +     +     NW   +++  GE R+    + L ++   ++    +
Sbjct: 181 TTLDALAQHDAVAY----LRSGTIRNWEVPLEQ--GETRLIAPRARLVMDDLQALADATM 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            G GI  LP ++V+D   +  LVR+++      F  +  +P
Sbjct: 235 AGFGIGWLPCWLVRDQLLSGELVRVLQQYPGAEFNAHALWP 275


>gi|239995448|ref|ZP_04715972.1| transcriptional regulator [Alteromonas macleodii ATCC 27126]
          Length = 296

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 5/291 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR GSF+ AA  L L +SSIS+ ++ LE ++G +LF R  R ++LT  G      +
Sbjct: 5   FVETARLGSFSAAAALLGLPKSSISQAVTNLEKQLGTRLFNRSTRSVSLTSDGETFLPQS 64

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  + +  Q +   S+   SG+LRI        N+L   L EF+  YP I +++   +
Sbjct: 65  IALLSEWDALQSQFITSADSVSGELRIDMPSRFATNILLPILGEFISTYPKITLRVSSVD 124

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  DC IR+   +  SSL+ R+L+T  ++   +P Y      P S+++L  H 
Sbjct: 125 RKVDLIKEGFDCVIRV-GALAGSSLVARRLLTYPIYNCVSPDYATKWGVPQSLEDLANHK 183

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           LI +   +     +F ++   +    E + S L VNS  +    C  G GIA +P   V+
Sbjct: 184 LIDYSHTLSHKTPEFEFMKGEELQTVEMQ-SLLSVNSTQAYFAACASGLGIAQIPSVGVE 242

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
                  L+R++ +    +  V   YP   +   +LK F  ++  K R+ K
Sbjct: 243 SELKEGKLIRVLPEFEAQAMPVNLLYPSRRQMPLRLKVFSEWLVDKLRENK 293


>gi|238023814|ref|YP_002908046.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878479|gb|ACR30811.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 336

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 105/187 (56%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E T+   Q ++ KP GKLR+     LG+ ++   L EF   +PDI +QL 
Sbjct: 67  ERCVRILAEVEETEASFQINNRKPHGKLRVDMPGSLGRLVVIPALNEFRERFPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL  C EP SI +L 
Sbjct: 127 LSDRPVDLLQEGVDCVIRI-GVLQDSSLVARRVGLFECVTVASPAYLARCGEPHSIDDLA 185

Query: 188 KHNLITF 194
           +H  + +
Sbjct: 186 EHRAVNY 192


>gi|262196476|ref|YP_003267685.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262079823|gb|ACY15792.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 297

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 142/290 (48%), Gaps = 18/290 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  VA   SF+ AA +L + +S++SR I+ LE ++G  L +R    + L+  G+
Sbjct: 8   YDLLAIFAAVAEESSFSRAAHKLGVGKSTVSRSIARLEEQLGAALIHRSTHKVALSTAGT 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   +     L     +L ES+ +PSG+LR+    D G  +L   L +F L +P++  
Sbjct: 68  ALYERVAPHLAALGQAVGKLPESAAEPSGELRMTVPHDFGAIVLPALLAQFSLRHPEVSF 127

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            + + N+ ID+  +  D AIR   + ++ SSL  R+L  + M  YAAP YL    EP S 
Sbjct: 128 DVRVTNRQIDLVSEGIDLAIRASPQRLKDSSLTARRLGDVLMACYAAPSYLARRGEPRSF 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +  KH    F  L+         LA V +    PR+   + + +L +      G+G+  
Sbjct: 188 GD-PKHEWAVFPPLL--------ALAQVPKEF-RPRV---RADDFLLLRALLAEGAGVGA 234

Query: 244 LPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LP ++    V +      + +++       Y  +P + + + K+ AFR+F
Sbjct: 235 LPVFVAAPYVAEGALQQVLPKELFRGPGGYYLLFPTSAQRSRKVTAFRDF 284


>gi|325524769|gb|EGD02744.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 307

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 135/293 (46%), Gaps = 10/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA+ L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAKAADLLGVSQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G LR+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAELIESEASAQALEPHGLLRVNAPMSFGLRHLSPLLPGFLERYPRVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     A+P YL  C  P   
Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLDRCGRPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L++H  +T+ +L       F   A+ +   G P    ++ N+   I    + G G+AL
Sbjct: 185 GDLEQHVCLTYTNLPTPEFWRFRHTASGEE-FGVPVRGRIRTNNADVIGPALIAGHGLAL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P+++V D      L  +M D       V    P      G L+A R  + L+
Sbjct: 244 QPEFLVWDALQRGELEEVMPDWKIADINVNLVTP-----PGMLRAARVTVLLE 291


>gi|323496198|ref|ZP_08101256.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323318475|gb|EGA71428.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 299

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 136/289 (47%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V  SGSFTHAA+    S S IS+++S LE  +G++L +R  R L+LT +G  
Sbjct: 7   DGMVTFVHVVDSGSFTHAAQITGHSTSYISKEMSKLEERLGVRLLHRTTRTLSLTPEGEL 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++    +  +  L     +P G LRI+  +  G   L   L +F+ LYP +  +
Sbjct: 67  YYESCKQLVESAQEIENALGGKQSEPQGHLRISCPVSFGVVELSPMLAKFMSLYPKVTFE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D A+R       SSLI R++ T      AAP YL+    P    E
Sbjct: 127 VDLSDRRVDLVAEGIDIAVRAVHKAADSSLISRRIKTAQAVTVAAPSYLRKYGTPKHPSE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L++H  IT+       + ++N   + D  + +  + S    NS    M  C+ G GI  L
Sbjct: 187 LNQHKAITYSYQKNPNLWEYN---SNDGEMIKVEVDSVFAANSPEMEMSMCLEGIGITRL 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+   ++      LV +  D       +   YP     + K++AF +F+
Sbjct: 244 PEEHTREAIATGRLVELFSDFPKHKIDLCLVYPSRKHMSAKVRAFIDFM 292


>gi|325925597|ref|ZP_08186982.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325543997|gb|EGD15395.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 299

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 135/290 (46%), Gaps = 20/290 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  VAR GSFT AA QL LSQS++S  +  LET +GI+L  R  R + +TE G++
Sbjct: 7   NDLQVFVTVAREGSFTRAAAQLGLSQSALSHTVRALETRLGIRLLTRTTRSVAMTEAGAR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    +++     L +   KP+G +RI T        +   L + L  YPD++++
Sbjct: 67  LFETVAPRLEEIDAQLSALTDFRDKPAGTIRITTAGHAADAYIWPALSKVLPDYPDLKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D    DI  +  D  IRL   +    +         M   A P Y  +   P    +
Sbjct: 127 LTVDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPMQRMAVVAVPGYFVHHTIPAVPAD 186

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
           L +HN I     T G L+P    DF      D+   E ++        N   +I++  + 
Sbjct: 187 LAQHNCIGLRLPTHGGLLPW---DF------DKDGREVKVRVDGQWTFNGSSAILRAALA 237

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G G+A LP+ +V ++     L R++ED   P    Y  YP   +++  LK
Sbjct: 238 GGGLAFLPETMVLEHVAAGRLRRVLEDWCEPFAGYYAYYPSRRQSSSALK 287


>gi|167625686|ref|YP_001675980.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167355708|gb|ABZ78321.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 316

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 137/276 (49%), Gaps = 15/276 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F+ +  +GS   AA+ L+L +S++SR++  LE E+G+KLF+R +R +TLT  GS 
Sbjct: 4   EDIALFHRIVETGSLVEAADILNLPKSTLSRRLQALEDELGVKLFHRQSRAMTLTASGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  T+ +   LE T  EL     + +G LRI          +   + EF+ L+P++ ++
Sbjct: 64  FYDKTTSMLATLEQTLSELSGEESEVTGHLRILIFPVPELTHITHAIFEFMDLHPELTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+  +  D+  +  D A  L      + ++ R +++  +H +A+P YL     P S  E
Sbjct: 124 IIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHIISETVHFFASPEYLAKAGRPTSPDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241
           L +HN I F    P      N     D P G+ R       L VNS  + ++  ++G GI
Sbjct: 184 LPQHNSILFR--YP------NGRIFNDVPFGKDRTLSVKGNLCVNSLATCLEATLMGRGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           +++P    K   ++  L  + EDV       +  YP
Sbjct: 236 SMMPLPFAKEHIESGELEMLFEDVEPYEGKCFLVYP 271


>gi|206564394|ref|YP_002235157.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|17998654|gb|AAG21824.1| putative transcriptional regulator CeoR [Burkholderia cepacia]
 gi|198040434|emb|CAR56419.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 334

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 144/287 (50%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTSSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP +I +L+
Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVTVASPDYLERHGEPQTIDDLN 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +     +     +W   +D    E ++   + VN   + +   + G G+   P 
Sbjct: 186 QHKAVNY--FSSRTGRTIDWTFLIDGKEVEMKMEGIVSVNDADAYVTCGIEGFGLIQPPL 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  +     L  ++  V      +   YP +   + K++ F +++
Sbjct: 244 FMVLPHLREGRLKEVLPGVKPLPMPISVVYPHSRHLSPKVRVFVDWV 290


>gi|148258304|ref|YP_001242889.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410477|gb|ABQ38983.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 294

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 147/300 (49%), Gaps = 17/300 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  VA    F  AA +L LS S+++R I+ LE  +G++L  R  R +TLT+ G +
Sbjct: 5   DAMQAFVTVADLNGFAPAARRLKLSPSAVTRLIAALEAHLGVRLLQRTTRSVTLTDAGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T  +   LE  ++  +   ++P+G+L ++  +  G+  +   +  +L  Y ++  +
Sbjct: 65  YLERTRRILADLEEAELAAESERLQPAGRLVVSAPVGFGRLHVGPVMAAYLSRYAEVAAE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+++ +++  D  DCA+R+   +  SSL+ R++ ++      AP Y K+  EP + + 
Sbjct: 125 LRLEDRQVNLVEDGVDCAVRIGH-LGDSSLVARQVGSMRRVVVGAPAYFKDHGEPRTPEA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L KH  I FG       +D+ +     +   E RI+    L  N+  + +QY   G G+ 
Sbjct: 184 LAKHQTIQFG-----AADDWRFA----KDGKELRIAVSPRLVTNNADTAIQYAEAGGGVT 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +  Y   D      L R++     P   ++  +P +   + K++AF + I     DW+F
Sbjct: 235 RVMAYQAADGLRGDRLKRVLAKYEPPPVPIHIVFPSSRLLSAKVRAFIDLIATTC-DWRF 293


>gi|293603675|ref|ZP_06686095.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292817943|gb|EFF77004.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 306

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 142/283 (50%), Gaps = 9/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ +  V   GSF  AA+++  ++S ++RQI+ LE + G++L  R  R L++T+ G   +
Sbjct: 7   MQTYAKVVELGSFAAAADKMGQARSVVTRQIAYLEQKYGVRLLNRTTRKLSMTDAGRAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   ++ LQ    +PSG+LR++  +  G   L   + E+L  YPD+ I L 
Sbjct: 67  ERVRPILAEVADLELSLQAEGQRPSGRLRVSAPVSFGILHLGPAIAEYLQRYPDVIIDLD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  D  D A+R+  P+Q SSL+ R L    +   AAP YL+    P + ++L 
Sbjct: 127 LNDRVVDLVEDGYDVAVRI-GPLQDSSLVARPLAPQQLLVCAAPAYLQQHGTPATPEDLK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +            W    D      R+ + L+ N+   +    + G G+ L P+
Sbjct: 186 QHRCLHYS----YASTGNEWHFEKDGVTHLVRVNAALRANNGDVLRTAALAGHGVILQPE 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++V D+     LV ++ D      ++Y  YP     + K+++F
Sbjct: 242 FLVGDDIRAGRLVALLADYAHTPISMYAIYPHRRFLSPKVRSF 284


>gi|270263872|ref|ZP_06192140.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042065|gb|EFA15161.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 302

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 137/291 (47%), Gaps = 18/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA +  L +SS+S++IS LE  +G++L  R  R L LT  G +  
Sbjct: 8   MALFALVAECGSFTAAANRAGLPKSSVSQRISQLEQTLGLRLLNRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + LQ     PSG+LRI+T   LG  L+     +F   YPD+ +++ 
Sbjct: 68  VHCQEMLSAAERADLALQRLRDNPSGRLRISTPAGLGATLVARLAADFQRQYPDVTLEVS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  +  D A R  KP Q SSLI R+L     +  AAP YL      L  Q+L 
Sbjct: 128 VSDAMVDLVQEGYDAAFRTGKP-QDSSLIGRRLGHAPRYLLAAPAYLAQFPPLLHPQQLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISCLQVNSYLSIMQYCVL-GSGIAL 243
           +H          +C+    W A   R   E    ++  L +   L   + C + G+GI L
Sbjct: 187 QH----------RCIAHRAWPAWSLRRGDEYYRWQLPMLHITDNLLYARECAISGAGITL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LP ++ ++      LV ++ +       +Y  YP    N+  L  F + + 
Sbjct: 237 LPAFLSREVVAQKQLVEVLPEWRAEGNELYLVYPSRKLNSPALACFIDVVL 287


>gi|163758456|ref|ZP_02165544.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
 gi|162284745|gb|EDQ35028.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
          Length = 296

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 142/304 (46%), Gaps = 23/304 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +RVF  VAR+G    AA +L ++ ++ +R+I+ LET +  +L  R   G  LT +
Sbjct: 1   MDWDDIRVFLAVARAGQILAAARRLGINHATAARRITSLETALDAQLIVRRTNGCGLTGE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    SG +RI      G + L   L      +PD+
Sbjct: 61  GEAFLLHAERMEAEMLAAQATLGRTDSAISGTVRIGAPDGFGVSFLAPRLGSLTARHPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL+   +   +    AD AI + +P +   L+ RKLV   +  YA+  YL+    P  
Sbjct: 121 RLQLVPVPRSFSLPQREADIAITVERPAE-GRLVARKLVDYSLSLYASRSYLEAHGTPKR 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDF------NWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            ++L +H LI++  DLI      F      NW A              +++S     +  
Sbjct: 180 TEDLKEHRLISYVEDLIFSPSLQFTREILRNWTAQ------------FEISSATGQTEAV 227

Query: 236 VLGSGIALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             G+G+A+L DYI   + +LVR++ E  I  S+  Y  Y E+ ++  +++   + I   A
Sbjct: 228 RSGAGVAVLHDYIAGFDSSLVRLLPEHRIERSY--YMVYHESARDLARVRTVADHISAIA 285

Query: 295 RDWK 298
           +D K
Sbjct: 286 QDHK 289


>gi|78067390|ref|YP_370159.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968135|gb|ABB09515.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 294

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 11/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S+I ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              V  +L+  + EL  S+  P G+LR++  TI     LL   L +F+  YP+I++ +  
Sbjct: 69  CRRVLAELDAAEQELTHSAEAPRGRLRVSLPTIG---TLLLPVLADFMAAYPEIELDIDF 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  +  D  +R  +P   S L  R L     H  A+P YL     P +  +L +
Sbjct: 126 SDRLVDVVDEGFDAVLRTGQP-SDSRLSSRLLGHFRQHLVASPDYLDRHGTPRTPADLTQ 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  + +    P   +   W   V R    P +    V NS  + + + + G GIA LP +
Sbjct: 185 HRCLHY--RFPTSGKLETWPLRVPRAGTLPEVPVAMVSNSAEARLCFALRGLGIACLPIF 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+D   +  L  ++++ I     +Y  +P     T KL+AF +++
Sbjct: 243 FVRDALEDGTLRAVLDEHIASCTPIYVLWPSGRHPTPKLRAFVDYM 288


>gi|325521821|gb|EGD00551.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 334

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 146/287 (50%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTSSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQNNNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP +I++L 
Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFEGVTVASPEYLERHGEPQTIEDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
            H  + +     +     +W   +D    E +++ +  VN   + +   + G G+   P 
Sbjct: 186 DHKAVNY--FSSRTGRTIDWSFLIDGKETEVKMNGIVSVNDADAYVTCGLEGFGLIQPPL 243

Query: 247 YIVKDNPNLVRIMEDV--ITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  +    R+ E +  I P    +   YP +   + K++ F ++I
Sbjct: 244 FMVLPHLREGRLKEVLPGIKPLPMPISVVYPHSRHLSPKVRVFVDWI 290


>gi|324009114|gb|EGB78333.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
          Length = 304

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISCYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|66046182|ref|YP_236023.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256889|gb|AAY37985.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 299

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 147/290 (50%), Gaps = 13/290 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V   GSF  AAE L +S+++ISR +S LE  +G +L +R  R L+LT++G + 
Sbjct: 6   EMQVFCTVVDRGSFVGAAEPLGMSKAAISRYVSTLEERLGARLLHRTTRRLSLTDEGRQF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    EV   ++  +  +  +S + SG LR+   +  G   L     +F+  YP +++++
Sbjct: 66  YHQAREVLAMMDEAEKAVSSASPEASGVLRVNAPVSFGVLHLAPIWADFMSAYPKVELEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D A+R+ + + +SSL+ R+L +  M   A+P YL +      + ++
Sbjct: 126 SLSDRLVDLVDEGIDAAVRIAR-MDNSSLVGRRLASTRMCLCASPAYLASHAPIEKLSDV 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +H ++ + +        F      + P G   +   S ++ N+  +     + G GI+L
Sbjct: 185 AEHGVVAYSNFASGTEWQF------EGPEGSESVHTRSVVRCNNGDTCRAITLAGGGISL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P ++V  +    +LV I+ +  +    +Y  YP       K+++  NF+
Sbjct: 239 QPSFMVAQDLRRGDLVEILPEYQSVELGIYVVYPTRKHLPAKVRSLINFL 288


>gi|91783107|ref|YP_558313.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687061|gb|ABE30261.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 303

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 138/289 (47%), Gaps = 5/289 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  + RSGSF  A  QL +SQS +SR ++ LE  +GI+LF R  R + LT++G +
Sbjct: 10  NGMGVFAAIVRSGSFAEAGRQLDMSQSGVSRSVARLEARLGIRLFDRTTRVVKLTDEGRR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +   LE  +           G LR+       + +L  +L+ FL  YP I + 
Sbjct: 70  FYEQIAPLLAGLEEAEAMAAGDRATVRGHLRVNVDPFFSRLILGPHLEAFLDQYPAIHVD 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+  +   D+  D  D A+R  +P ++SSL+ RKL+   +   AAP YL+    P   +E
Sbjct: 130 LMTRDHLGDMVSDGFDLAVRFGEP-RNSSLVARKLLDTRILTVAAPAYLRRHGRPAQPRE 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L+  + +    L P+    F W     R   + + +  L +N   ++   C+ G GIA +
Sbjct: 189 LESGSHVCIEFLNPETGRPFVWEFHQKRKKIQIQTNGRLTLNDVGTMHSACLAGYGIAQV 248

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  V+    +  LV +  D     F +Y  YP       K +AF +F+
Sbjct: 249 MEIGVEAMIASGKLVELFPDWRDDRFPLYALYPSRHHLPAKTRAFIDFV 297


>gi|254440111|ref|ZP_05053605.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198255557|gb|EDY79871.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 294

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 145/300 (48%), Gaps = 8/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DW  L+ F  V ++G+   AA QL  SQ ++SRQ+  LET+ G+ LF R    L LT
Sbjct: 1   MNIDWSLLKTFLTVVQAGTVAQAAAQLACSQPTVSRQLKELETQTGLTLFDRRGYRLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ +      +  +     + +       +G +RI+T+  +  + L   L      YP
Sbjct: 61  DAGASILEFAQNMADQANHLALAIAGKETVVNGTIRISTSEVIAYHFLPPVLVTLQEQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I +++I++N   ++S   AD AIRL +P     L++ K+ T+ + A+A+  YL+    P
Sbjct: 121 EIDVEIIVENSAANLSAREADIAIRLFRP-DKLGLVRTKIGTLEIGAFASKSYLELYGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  HNL+ + D   + ++ F        P   P +  ++ +++L        G+G
Sbjct: 180 RTLDDLVYHNLLGY-DQSAEILDGFR----KHLPDANPSLFSVRCDNHLVYWNMIRAGNG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298
           I      +   +  L R++ D+      V+    EAL+ T +++A    +   L  R W+
Sbjct: 235 IGFCSTLMASQDKMLTRVLPDLKPDGNDVWLATHEALQKTPRVRAVWELLSSQLTKRLWE 294


>gi|119899660|ref|YP_934873.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119672073|emb|CAL95987.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 307

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 143/296 (48%), Gaps = 13/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L +F  VA  GSF+ AAE+L L +S++SR+I+ LE  +G +L  R  R L+LT+ 
Sbjct: 4   FDANDLLIFARVAEGGSFSRAAERLGLPKSTVSRRITLLEERLGERLMLRTTRRLSLTDF 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++  +++      Q    +PSG+LR++   D   +LL   L  F+ L+P I
Sbjct: 64  GLHLLEHARQLAAEVDAVASLAQHRQAQPSGRLRVSMPADFANHLLLDMLSAFVALHPAI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L  + +D+  +  D AIR+      +SL  R++ +  +  YAA  YL     P  
Sbjct: 124 SLDLDLSPRRVDLIGENFDLAIRIGDLPDDASLAARRIRSFPISLYAARDYLAERGTPRV 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEP--RISCLQVNSYLSIMQYCVLG 238
             +L +H  +    L  +  E   W  L       G P  RI+    NS  +++Q    G
Sbjct: 184 PDDLMRHEALR---LFGRSGEPTPWRLLNGEQHWEGLPPGRITA---NSPETLIQLARAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GIA +PDY    +     L+R++ +   P+ T +  +P       + +AF + + 
Sbjct: 238 QGIAAVPDYFAVAHVRRGELLRVLPEWSLPANTAWAVFPGRKLMPARTRAFLDMVL 293


>gi|254254648|ref|ZP_04947965.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
 gi|124899293|gb|EAY71136.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
          Length = 335

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 147/289 (50%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 8   MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 68  ERCVRILADVEETEASFQNNNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +  SSL+ R++      + AAP YL+   EP +I++L 
Sbjct: 128 LSDRPVDLLQEGVDCVIRV-GALLDSSLVARRVGLFEGVSVAAPAYLEKYGEPQTIEDLS 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +     +     +W   +D    E +++ +  VN   + +   + G G+   P 
Sbjct: 187 QHKAVNY--FSSRTGRTIDWAFLIDGKEVEVKMNGIVSVNDADAYVTCGLEGFGLIQPPL 244

Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
           ++V  +    R+ E  + P F      +   YP +   + K++ F ++I
Sbjct: 245 FMVLPHLRDGRLKE--VLPGFKPLPLPISVVYPHSRHLSPKVRVFVDWI 291


>gi|209549950|ref|YP_002281867.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535706|gb|ACI55641.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 300

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 142/300 (47%), Gaps = 15/300 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VAR GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 3   DLNDIAVFVTVARYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLLQRTTRKLSLTAQG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S      SE    L   +  L E+  KP G L+I+  +  GQ +    +  FL  YP+I+
Sbjct: 63  SAYFDQCSEPLAHLIDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFVSAFLKTYPEIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N  +D+  +  D  IR  + ++ SS++ ++L     +  AAP Y+K    P   
Sbjct: 123 IDLFVTNLFLDLIAENIDLGIRFGE-LKDSSIVAQRLGKSVRYLVAAPDYMKGRALPSKP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +    L+     +  W     R     ++S  +    + ++  +   G GI 
Sbjct: 182 EDLKDHQCV----LLNGRNGEAEWHLVSGRKSVRQQVSGPVSSRDFEAVSAFTYRGHGIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298
           LLP     D      LVR++ D  +    V+  YP     T +    R  +FL+A + WK
Sbjct: 238 LLPSTYCDDEIRRGELVRLLPDWSSEEIFVHAVYP-----TRRFLPLRLQVFLEALKAWK 292


>gi|299769346|ref|YP_003731372.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298699434|gb|ADI89999.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 342

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 126/243 (51%), Gaps = 4/243 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SF+ AA+ L L ++S++  I GLE  + ++L  R  R L+LT  G+  +
Sbjct: 7   MKVFNKVVETNSFSLAADSLGLPRASVTTTIQGLEKHLQVRLLNRTTRKLSLTPDGAVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +E  +    +S   P G+LRI     +G+ +L   L +F   YPDI + + 
Sbjct: 67  ERTTRILADVEDVESTFHDSERGPRGRLRIDVKASIGRLILIPMLCDFHSKYPDIDLVIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR+ + ++ SSL+ R++ TI     AAP YL    EP +I +L 
Sbjct: 127 MSDRPVDLVQDAVDCVIRIGQ-LKDSSLVARRIGTIQCVTVAAPRYLAEHGEPKTINDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           KH ++ + +   +   + +W   VD  I    +   + VN   S +   V G G+   P 
Sbjct: 186 KHQVVHYFN--SRTGRNIDWDFMVDGEIHSVGVKGRVSVNDGDSYIDLAVQGFGLIQCPY 243

Query: 247 YIV 249
           Y+V
Sbjct: 244 YMV 246


>gi|126726181|ref|ZP_01742023.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126705385|gb|EBA04476.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 299

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAAKKMGISKSAVSKYLSSLEARLGARLLNRTTRRVSPTEIGLVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LR++   D G N +   + +FL  YPDI   +
Sbjct: 66  YDRACRVLNDAGEADSLVTSMQSAPSGPLRVSVATDFGVNHMSPIIGDFLSEYPDITFNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D AIR+ + ++ SSL  RK+        A+P Y +    P  I +L
Sbjct: 126 VLNNRFVELISEGFDMAIRVGE-MEDSSLRSRKIAVTRKRMIASPEYFEKYGRPEKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           + H L+ + +     +    W  T   P GE R       L VN   S++     G GIA
Sbjct: 185 NDHMLLHYSNQSNGNV----WKLTA--PSGEKRHVRSAGWLTVNDGQSLLNAAKSGLGIA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  D      +V  M D+   +  +Y  YP       K++A  +F+
Sbjct: 239 YLPGFLYSDALARGEVVEAMPDLPEETVGIYAVYPPGRFTQPKVRALIDFL 289


>gi|26246152|ref|NP_752191.1| putative transcriptional regulator YafC [Escherichia coli CFT073]
 gi|110640423|ref|YP_668151.1| LysR family transcriptional regulator [Escherichia coli 536]
 gi|191171382|ref|ZP_03032931.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|227884787|ref|ZP_04002592.1| transcriptional regulator YafC [Escherichia coli 83972]
 gi|300988186|ref|ZP_07178587.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|300990969|ref|ZP_07179419.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|301050543|ref|ZP_07197416.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|331656198|ref|ZP_08357160.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA206]
 gi|26106549|gb|AAN78735.1|AE016755_235 Hypothetical transcriptional regulator yafC [Escherichia coli
           CFT073]
 gi|110342015|gb|ABG68252.1| transcriptional regulator, LysR family [Escherichia coli 536]
 gi|190908316|gb|EDV67906.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|227838228|gb|EEJ48694.1| transcriptional regulator YafC [Escherichia coli 83972]
 gi|300297751|gb|EFJ54136.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300305635|gb|EFJ60155.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|300407500|gb|EFJ91038.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|307552055|gb|ADN44830.1| putative transcriptional regulator LYSR-type [Escherichia coli ABU
           83972]
 gi|315292134|gb|EFU51486.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
 gi|324011823|gb|EGB81042.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
 gi|331054446|gb|EGI26455.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA206]
          Length = 304

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISCYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLRFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|331645377|ref|ZP_08346481.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M605]
 gi|331045539|gb|EGI17665.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M605]
          Length = 304

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 146/297 (49%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G++L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVRLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV ++ D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELIADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|293413463|ref|ZP_06656112.1| HTH-type transcriptional regulator yafC [Escherichia coli B185]
 gi|291433521|gb|EFF06494.1| HTH-type transcriptional regulator yafC [Escherichia coli B185]
          Length = 304

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGQRYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHELKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|260596624|ref|YP_003209195.1| HTH-type transcriptional regulator YafC [Cronobacter turicensis
           z3032]
 gi|260215801|emb|CBA28245.1| Uncharacterized HTH-type transcriptional regulator yafC
           [Cronobacter turicensis z3032]
          Length = 296

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 124/254 (48%), Gaps = 15/254 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L +F  V  S SF+ AAEQL+L+ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 2   MKASSDELIIFVAVVESRSFSRAAEQLNLANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   +V  ++ + + EL ES   P G LRI     +  +LL   +K F   YP
Sbjct: 62  EEGERYFRRVQQVLQEMASAETELMESRQTPRGLLRIDAATPVILHLLLPMIKPFRERYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P YL     P
Sbjct: 122 EVTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFISYRKIVASPDYLARHGVP 180

Query: 181 LSIQELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            +I +L +H  + F + +     P   ED   L              +  NS  ++ Q C
Sbjct: 181 ETICDLKEHICLGFTEPVSLNTWPVACEDGQLLEIT---------PGMTSNSGETLKQLC 231

Query: 236 VLGSGIALLPDYIV 249
           + G+GIA L DY++
Sbjct: 232 LTGNGIACLSDYMI 245


>gi|330828658|ref|YP_004391610.1| LysR family transcriptional regulatory protein [Aeromonas veronii
           B565]
 gi|328803794|gb|AEB48993.1| LysR-family transcriptional regulatory protein [Aeromonas veronii
           B565]
          Length = 299

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 147/290 (50%), Gaps = 10/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           LRVF  V   GS + A E+L +S++ +SR ++ LE+ +G +L +R  R L+LT  G + L
Sbjct: 7   LRVFVSVVEQGSLSGAGEKLDMSRAMVSRYLAELESWMGARLLHRTTRRLSLTGPGEEAL 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R  + +    E  QI ++     P G+LRI ++  L + LL G   ++L  YP   I +
Sbjct: 67  NRARAMLALGEEMEQIAVKGDDA-PKGQLRITSSYSLSEALLVGAANDYLAQYPGTAIDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +++  +  D A+R+   +   +L+ R+L T H    A+P YL     P  +Q+L
Sbjct: 126 LLLDRTVNLVEERIDLAVRITNDLD-PNLVARRLGTCHSVVCASPAYLARHPMPHKVQDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +T+     K + +FN     D P   P    L  N    +++  + G+GI+L P 
Sbjct: 185 ALHNCLTY-TYFGKSLWEFN---GPDGPESVPVSGNLSANISSLLLEATLEGAGISLQPR 240

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y  +   ++  LV ++ D       VY  Y    + +  L++F +F+  +
Sbjct: 241 YSAQPYLEHGELVPLLTDWQPKRLGVYGVYATRKQMSPLLRSFLDFLLAR 290


>gi|296114672|ref|ZP_06833324.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978768|gb|EFG85494.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 304

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 138/278 (49%), Gaps = 15/278 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + VF  V ++GSF+ A   L LS+S++ + I+ LE  +G++LF+R  R ++LTE+G 
Sbjct: 5   FDGVDVFIEVIKAGSFSVAGSHLALSRSAVGKTIARLEERLGVRLFHRTTRTISLTEEGL 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +       H+L+     L+    + +GKLRI   +  G++ +   L      YP +++
Sbjct: 65  IYYERCLRAVHELKEGAELLESGRHEVAGKLRITMPLLFGRHCVAPILVNLATQYPQLKL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   +  +D+  D  D AIR   P     L  R + T      A+P YLKN   P  I 
Sbjct: 125 DLHFSDHTVDLIGDRYDLAIRNHSPGIDMGLDVRVVATQGKVVCASPTYLKNSAIPRDID 184

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGS 239
           +L +H  + +   G+  P       +L+  +R   +  PR   LQ +SY +I    + G+
Sbjct: 185 DLGQHQTLAYLHKGETFPWTF----FLSDGERKKADLNPR---LQFDSYDAIADATLAGA 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           G+A LPD++     ++  L+R++ +   P F  Y  +P
Sbjct: 238 GVACLPDWLAHNHIESGRLLRLLPNFSMPRFDTYAVWP 275


>gi|73543095|ref|YP_297615.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120508|gb|AAZ62771.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 303

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 143/304 (47%), Gaps = 18/304 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V   GSF  AA+QL +S + ++R ++ LE+ +G +L  R  R L+LT+ G   
Sbjct: 6   SMRVFAKVVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTDAGETY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   +E  +  +   S   SG LR+ T +  G +LL   +  F  LYPD+   +
Sbjct: 66  LQRCQQILEDVEEAEGVVTARSQSLSGTLRLVTPVMFGLHLLPNLMSRFQQLYPDVVFDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++++DI  +  D A+ L      S L+ R L++  +   A+P Y++         EL
Sbjct: 126 LLSDRNVDIVEEGRDVAVMLSDLGLGSHLVARPLISAEIVLCASPEYVRTHAPLRHAHEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGIA 242
             H  I     +P    ++  L     P GE     R   L  N+ L+  Q  +   G+A
Sbjct: 186 TSHRCIAMR--LPNVEHEWTLLG----PEGEVTVPIRPGLLCSNAELA-HQAALANMGVA 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF----LKAR 295
           +L  Y+ + N    NLVR++     P   V   YP       K++AF +F+     ++ R
Sbjct: 239 MLSSYLARQNIEAGNLVRVLPQYQLPRRDVSVVYPSRKFLPTKVRAFIDFLLEEGQVRGR 298

Query: 296 DWKF 299
           D +F
Sbjct: 299 DEQF 302


>gi|317047014|ref|YP_004114662.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316948631|gb|ADU68106.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 302

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 151/312 (48%), Gaps = 27/312 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGSF+ AAEQLH++ S++SR +  LET++G+ L  R  R L LT
Sbjct: 1   MKASSDELKVFIAVVESGSFSRAAEQLHMANSAVSRTVKKLETKLGVALLTRTTRQLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    R   ++  ++ T + EL +    P G LRI     +  +LL   +K F   YP
Sbjct: 61  HEGEHYFRRVQKLMQEMSTAESELIDRQQAPRGVLRIDAATPVILHLLLPMVKPFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + LI     I++     D AIR    +  S+L  R L   +    A P YL     P
Sbjct: 121 DVTLSLISSESFINLIERKVDVAIRA-GTLTDSTLRARLLFISYRKLVATPAYLAKRGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYC 235
            S+ +L +H  + F +  P  +    W   V +  GE     P +S    NS  +I Q C
Sbjct: 180 HSVADLAQHECLGFVE--PLRLN--RW--PVAQENGELYDINPGMSS---NSGETIKQLC 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRN 288
           +  +GIA L DY+V     +   V ++ D    V  P   VY+     L  + +++AF +
Sbjct: 231 LDDNGIACLSDYMVDQDIADGTFVELLADQRLPVEMPFNAVYYS---DLGVSQRVRAFID 287

Query: 289 FI--FLKARDWK 298
           F+  +++ + W+
Sbjct: 288 FLSDWVQNQPWR 299


>gi|172038666|ref|YP_001805167.1| LysR family transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171700120|gb|ACB53101.1| transcriptional regulatory protein, LysR family [Cyanothece sp.
           ATCC 51142]
          Length = 295

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 136/289 (47%), Gaps = 6/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R F  V   GSF  AA ++HLS+S++++ +  LE  +G  L YR  R +T T  G 
Sbjct: 4   FESIRAFTQVIEEGSFAAAARKMHLSRSAVNKLVINLENHLGASLLYRTTRQVTPTATGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E+   LE  ++ + +   +P G L+I   +  G   L   + +F+  Y  I+I
Sbjct: 64  AFYERCLEILSTLEEAELSVSQQHNEPQGNLKINAPMSFGIARLGEIIAKFMTRYSKIKI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L+++ ID   +  D  IR+  P  S +L+  K+ T+     A+PHYL     P ++ 
Sbjct: 124 QLTLEDRFIDPISEGYDLVIRIGSPPNSPNLLVHKITTLSRVICASPHYLTTKGMPNNLS 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +G LI      F      +R   E        N+   +    + G GI +L
Sbjct: 184 DLKQHSCLHYGYLINGSQWQFIHQGKEERITVE---GFFCSNNGEVLRDAALQGLGIVML 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P++IV    +  +L  I  D   P   +   YP     + K+K F  F+
Sbjct: 241 PNFIVDHYLERGDLQIIFPDYQIPELDLSIIYPINRHLSTKIKLFTEFL 289


>gi|307132675|ref|YP_003884691.1| transcriptional regulator [Dickeya dadantii 3937]
 gi|306530204|gb|ADN00135.1| Transcriptional regulator [Dickeya dadantii 3937]
          Length = 298

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 140/303 (46%), Gaps = 24/303 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA Q  +++SS+S +IS LE  +G++LF R  R L LT  G +  
Sbjct: 8   MALFALVAECGSFTEAARQAGIAKSSLSLRISQLEQSLGLRLFNRTTRKLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E  ++ +Q     PSG+LRI +   LG  LL     EF L +P + + ++
Sbjct: 68  VHCREMRQASERAEMAMQHLRDNPSGRLRITSPAGLGATLLARLTAEFQLRFPAVSLDVV 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  D A+R  KP Q SSLI R L  +  +  A+  YL         +EL 
Sbjct: 128 VADRVIDLVDEGFDAALRTGKP-QDSSLIGRSLGQVPHYLVASAGYLAGSEPIAHPRELQ 186

Query: 188 KHNLITFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241
            H  I      P+       E F W           R+    +   L   + C L G GI
Sbjct: 187 SHRCIAH-RAWPEWGFHHEAEYFLW-----------RLPQSHITDNLLYARACALAGGGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARD 296
            LLP ++ +   D+  LV ++      S  +Y  YP    N+  L  F +F   F   RD
Sbjct: 235 TLLPAFLCREQLDSGELVCLLPGWQADSNDLYLIYPGRKLNSPALNCFIDFALSFEALRD 294

Query: 297 WKF 299
           + F
Sbjct: 295 YSF 297


>gi|148553990|ref|YP_001261572.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148499180|gb|ABQ67434.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 313

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 139/292 (47%), Gaps = 15/292 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+    F  V   GSFT AAE+L LS+S+ISR +S LE  +G +L +R  R L  T+ G 
Sbjct: 4   WETYEAFIAVVECGSFTAAAERLRLSKSAISRSVSSLEARLGSQLLFRTTRRLAPTDLGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E++  L     E  E      GKLRI  +   G+  +     E + L+  ++I
Sbjct: 64  SVYRRCVELFDMLAEIDAEAMEHDASLRGKLRIVASDSFGECYIAPLAAEMMRLHEQLEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + ++ ++ IDI  D  D AIR    + SS  +Q+     H+ A A+P YL     P ++ 
Sbjct: 124 EFLVTDRTIDIVADGYDMAIRYNAQVDSSLKVQKLYELPHICA-ASPEYLLRAGTPFTLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGI 241
           +L +HN +        C     W   + R    P +S   C   N+  +++   + G GI
Sbjct: 183 DLTRHNCLV--STFEAC---HAWRFGMGRTQKTPNLSGNWC--SNNGPALLTAALNGIGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP+  ++       L+ ++ +  +    V+  YP A +   K++AF +++
Sbjct: 236 VWLPELYLRPYIKAGALIELLGEHRSDPMPVWAVYP-ARRQAAKVRAFIDYV 286


>gi|116695056|ref|YP_840632.1| transcriptional regulator [Ralstonia eutropha H16]
 gi|113529555|emb|CAJ95902.1| transcriptional regulator [Ralstonia eutropha H16]
          Length = 311

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 138/288 (47%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF  AAE + L +++++R I  LET +G+KL +R  R +++T  G+  +
Sbjct: 7   MQAFTRVVDVGSFARAAESMDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTNDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  L   +  P G L + TT  L Q +L  +L EF   YPD+++ L 
Sbjct: 67  ERCVRILADVEEAEQSLTRQNNSPRGTLSVDTTAGLAQLVLVPHLHEFFQAYPDLKLDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++ K ID+  +  D  +R+  P++  S++ R++  + +  YA+P YL     P  + EL 
Sbjct: 127 INGKPIDLLQEGVDVVLRVGTPVE-ESMVARRIGHVQLAFYASPIYLNRFGTPHDLAELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  + F  L  +   +  W   + R +    +   S +  N     M   + G G+A +
Sbjct: 186 QHKAVNF--LSNRTGREMPW--PMARGMERSEVLLPSAISTNDADVYMGCALEGHGVARV 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + +    +  LV +M D  T    +   YP+    + K++ F N+
Sbjct: 242 SRAMAEPYVASGRLVEVMTDWQTEELPISAMYPQNRHLSAKVRVFVNW 289


>gi|126172470|ref|YP_001048619.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125995675|gb|ABN59750.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 337

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 140/284 (49%), Gaps = 13/284 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS  +  
Sbjct: 11  VFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V   +E+T+ +L      PSG+L+IA  I  G  LL       L  +P I + L+L 
Sbjct: 71  CRKVIAIVESTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAHPQISLNLLLQ 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  IDI  +  D AI +  P+  S+LI R L    M   A+P YL        + ++ KH
Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARHLADWRMLLCASPDYLP-------MHKIFKH 182

Query: 190 --NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L  F  +   C          ++   E     + VN+  +++Q  + G G A LP+ 
Sbjct: 183 PAELAAFNRINHPCANSETLTHVRNKECFELTSQRITVNNMQALIQLTLDGLGFAALPEP 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            V    ++  LV ++ +    +++VY       K   K+K   N
Sbjct: 243 EVHKYLESGQLVTLLPEWSLNTYSVYSVTSARDKQPAKVKEALN 286


>gi|126442625|ref|YP_001061676.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|134283095|ref|ZP_01769797.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167722504|ref|ZP_02405740.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167741482|ref|ZP_02414256.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167827049|ref|ZP_02458520.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167897121|ref|ZP_02484523.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167905499|ref|ZP_02492704.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167913807|ref|ZP_02500898.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167921718|ref|ZP_02508809.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217424540|ref|ZP_03456038.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226196555|ref|ZP_03792136.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|126222116|gb|ABN85621.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|134245743|gb|EBA45835.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|217392464|gb|EEC32488.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225931431|gb|EEH27437.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 299

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 140/299 (46%), Gaps = 16/299 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +TE G 
Sbjct: 3   FDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTELGH 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +LH   + +   +  T+  +        G L+I+  +  G   L   + EFL+ +P +++
Sbjct: 63  ELHARATRILADIAETEEAMSARRGDLRGTLKISAPMSFGIAHLSPLIAEFLVRHPAVRL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y +    P +  
Sbjct: 123 HVELSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRKHGAPATPA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L     + +G           W   +D   G  R       L  N+   +    V G G
Sbjct: 182 DLHGRACLLYGQ-----EGRTGWEFMID---GARRTFEVQGALLANNGDVVRDAAVAGLG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IALLP +IV    D   LV ++E        +   YP+  ++    + F  FI  + R+
Sbjct: 234 IALLPHFIVAHALDTGRLVAVLEPFAQAPLPINAVYPQHRQDMAACRTFLGFIEERLRE 292


>gi|332187119|ref|ZP_08388859.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
 gi|332012819|gb|EGI54884.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
          Length = 306

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 146/299 (48%), Gaps = 14/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  V    SF+ AA+ + LS++++S+ I+ LE ++   LF+R +R L LTE G
Sbjct: 5   DLEAWAIFAAVVEHRSFSAAADAIGLSKATVSKAITRLEAQLNQSLFHRTSRRLALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    + +  +    +   ++++  PSG++R+A  +  G + +   + +FL  +P I+
Sbjct: 65  KPLADHAARILAEARAAEEAARDAASAPSGRIRLAAPMSFGVSNIAPIIADFLAQHPGIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L +  +DI  +  D A+R+   +  SSL  R+L  I  H  A+P YL     P   
Sbjct: 125 IELSLSDARVDIVAEGYDIALRIAD-LPDSSLRARRLCGISTHVVASPGYLAEHGHPRHP 183

Query: 184 QELDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL +H L+++ ++  P      N      RP G      L  NS  +++   V G GIA
Sbjct: 184 NELGEHRLLSYSNITGPWRFRHPNGAEVSVRPQGP-----LTANSGDALVPAVVAGLGIA 238

Query: 243 LLPDYIVKDNPNL-----VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP +I+   P+L       I+ +   P   ++   P +     +++A   ++  + RD
Sbjct: 239 RLPGFII--GPHLTSGAATEILTEWTPPPIGLHLLTPPSPLRPARVEALIAWLADRVRD 295


>gi|308185770|ref|YP_003929901.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1]
 gi|308056280|gb|ADO08452.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1]
          Length = 300

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 141/307 (45%), Gaps = 35/307 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGSF+ AAEQL ++ S++SR I  LE ++GI L  R  R L LT
Sbjct: 1   MKASSDELKVFVSVVESGSFSRAAEQLQMANSAVSRTIKKLENKLGIALLTRTTRQLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +  R       ++ T + +L ES  +P G LR+     +  +LL   +K F   YP
Sbjct: 61  QEGERYFRHVQRFLQEMTTAESDLIESLHEPKGLLRVDAATPVILHLLMPMVKPFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + LI     I++     D AIR    +  S+L  R L        A+P YL+    P
Sbjct: 121 GVTLSLISSESFINLIERKVDIAIRAGN-LTDSTLRARLLFNSFRRVVASPAYLREHGVP 179

Query: 181 LSIQELDKHNLITFGD-----LIPKCME-----DFNWLATVDRPIGEPRISCLQVNSYLS 230
             + +LD H  + F +       P   E     D +W               +  NS  +
Sbjct: 180 QKVTDLDNHACLGFEESPRLNRWPIARESGELYDIDW--------------AISSNSGET 225

Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMED----VITPSFTVYFCYPEALKNTGKL 283
           I Q C+ G+GIA L DY++        LV ++ D    V  P   VY+     +  + ++
Sbjct: 226 IKQLCLTGNGIACLSDYMIDREVAEGTLVEVLADQRLPVEMPFNAVYYS---DIGVSQRV 282

Query: 284 KAFRNFI 290
           +AF +F+
Sbjct: 283 RAFIDFL 289


>gi|293395183|ref|ZP_06639469.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422360|gb|EFE95603.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 291

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 124/263 (47%), Gaps = 14/263 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  V R G+   AA +LH+ Q+++ R+I+  E  +G KLF R  +  +L+  
Sbjct: 2   MNWDDARFFLAVTRCGTLRKAAHELHVDQATVGRRIAAFEEALGSKLFIRTPKSFSLSPL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      + + ++    +         G +RIATT  + +  +   L+     +P I
Sbjct: 62  GEEMLADVMNMENAVQAIGRKATSGDDSLCGNVRIATTDTMAEAFVIPALRYLRERHPQI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+      DIS   AD AIR  +P  S  LI +++ TI M  YA   YL     PL 
Sbjct: 122 TVTLLTAVNISDISYRGADLAIRGARP-DSDELIIKRMATIEMGLYATQDYLDKHGVPLK 180

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLG 238
              L  H+L+ F  +L+P+   DF          GE  I+    LQ NS L +      G
Sbjct: 181 GDHLRGHDLLMFPRELVPRHWNDF---------CGETLINPNVVLQCNSQLLLRSATRNG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMED 261
            GI LL  ++  ++P+LVRI  D
Sbjct: 232 LGIGLLSSFLADEDPDLVRIFPD 254


>gi|269104971|ref|ZP_06157667.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161611|gb|EEZ40108.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 302

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 152/301 (50%), Gaps = 13/301 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V   GSFT AAE L L++S++SR+++ LE+ +G++L  R  R +TLT++
Sbjct: 1   MDLNTVAIFAQVVECGSFTQAAEALELTKSTVSRKVAELESHLGVRLLTRSTRHITLTQE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++  +++   +   ++E+  +  +  G++ IA  +++GQ +L   + E+L  YP++
Sbjct: 61  GELFYQSCAQMMDIISQAELEVTANQDQVRGRINIAMPVEVGQQVLIPYINEYLRQYPNV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L NK +++  +  D  +++  PI+ SSLI R+  + H    A+P YLK   E  +
Sbjct: 121 VIHLDLTNKPVELISEGIDLYVQI-GPIEDSSLIARQFHSSHRILVASPEYLKQYGEINA 179

Query: 183 IQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
             +L D H  I   +         N    + +   E  I     +QVN+  +    CV  
Sbjct: 180 PTDLKDPHYQIRIDN-----AARVNSAWQISQNEQEFHIELPHRIQVNTISAAADACVDS 234

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIALLP++I     +   LV ++ +   P   +   Y +      +L+   +F+  K  
Sbjct: 235 LGIALLPEFICLPHLETGRLVHLLPEWKMPEVPISLVYSQRNLMPKRLRLLIDFLMSKME 294

Query: 296 D 296
           +
Sbjct: 295 E 295


>gi|117920283|ref|YP_869475.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117612615|gb|ABK48069.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 293

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 145/292 (49%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA   +FT AA +L++S + +SRQI  LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEVENFTLAALRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  + +    P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAITDLKGSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   EP ++ 
Sbjct: 124 NVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGEPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELNQHNCLIGNHNYWRFIEN-------GRERNIKVRGNLICNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           PDY ++++     L+  ++        ++  YP+    + K++   +++  K
Sbjct: 236 PDYYIEEDIHAGRLISFLDAHREAKEGIWALYPQNRHLSAKVRVLVDYLAEK 287


>gi|116693447|ref|YP_838980.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737276|ref|YP_001778536.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116651447|gb|ABK12087.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169819464|gb|ACA94046.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 334

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP +I +L 
Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVTVASPDYLERHGEPQTIDDLG 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +     +     +W   +D    E ++   + VN   + +   + G G+   P 
Sbjct: 186 QHKAVNY--FSSRTGRTIDWTFLIDGKEVEMKMEGIVSVNDADAYVTCGIEGFGLIQPPL 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  +     L  ++  V      +   YP +   + K++ F ++I
Sbjct: 244 FMVLPHLREGRLKEVLPGVKPLPMPISVVYPHSRHLSPKVRVFVDWI 290


>gi|264677462|ref|YP_003277368.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262207974|gb|ACY32072.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 303

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ L VF  VA   SFT AAEQL L++S +S  +  LE ++G +L  R  R + L+  
Sbjct: 1   MDFNALHVFTRVAELSSFTQAAEQLGLTKSRVSTVVQQLEKQLGTRLLQRTTRHVRLSAD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +    + E+   LE  Q   Q ++    G LRI     L ++++   L EFL  +P +
Sbjct: 61  GEQFLERSKELMADLEQLQAMFQPAASGLRGSLRIDMPNSLARDVVIPKLPEFLSAHPLL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +   ++ +D+  +  DC +R+  P+  + LI R +  + M   A+P YL+    P +
Sbjct: 121 EVGISTSDRRVDVVQEGFDCVVRI-GPLADTDLIARTIGAMEMCNLASPAYLERHGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGI 241
           + +L +H +I + + + +      W     + I   P  S L VN   +    CV G G+
Sbjct: 180 LADLSRHCIIHYANQLGR--HGAGWEYQRGKEIALHPVRSALVVNGTDAYQAACVAGLGM 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P    +   D   LV +M D       V   YP       ++ AF N+I
Sbjct: 238 IQAPVRGARHLLDQGLLVEVMPDFRAAPMPVSLLYPHRRHIAPRVTAFLNWI 289


>gi|221213857|ref|ZP_03586830.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221166034|gb|EED98507.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 317

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 4/287 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D ++ F       S T +A +L LS+S +S++IS LE  +G++L  R  R +  TE 
Sbjct: 1   MNMDDIQAFLFAVERQSITDSARRLGLSKSVVSKRISDLERTLGVQLLMRSTRNVIPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++V S+   +L      + E +    G+LR+   + L +  L   +  F   +P +
Sbjct: 61  GRAFYQVASQAMRQLVDVSEAIAERAHGVCGELRVTAPVSLTRRWLGSAIAAFAASHPPL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  D++ +++ ++  D AIR  + +  S+LI R++ +       +P Y+    EP S
Sbjct: 121 RVTLETDDRIVNLDVERFDVAIRSAR-LPDSALIARRIGSCERVIVCSPEYIAKHGEPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +L KH  + +    P     F       +P      S    N+  ++    + G GIA
Sbjct: 180 IDQLLKHRCLNYSTAAPSATWSFAAPGGHGKPRAINPTSAFLSNNGETLCDAAIHGVGIA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LLP YIV D   +  L R++ D       VY  Y  +   + KLK F
Sbjct: 240 LLPRYIVDDALRDGRLARVLADASPQDEIVYAVYARSPFVSNKLKLF 286


>gi|86748823|ref|YP_485319.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86571851|gb|ABD06408.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 299

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 140/302 (46%), Gaps = 18/302 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA    F  AA +L LS S+++R ++ LE  VG +L  R  R + LT+ G++
Sbjct: 5   DAMAAFVAVADLNGFAPAARKLGLSPSAVTRLVAALEQRVGARLLQRTTRSVALTDIGAR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +E  +       + PSG+L ++  +  G+  +   + ++LL YPD+  +
Sbjct: 65  YLERVKRILSDVEEAEASASAERIDPSGRLVVSAPVGFGRLHVAPLMSDYLLRYPDVAGE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ I++  D  DCA+R+  P+  SSL+ R+L T+     A+P YL     P+   E
Sbjct: 125 LRLSDRIINLVEDGVDCAVRI-GPLADSSLVARQLGTMRRIVVASPDYLGARGVPMVPAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           +  H+ + FG +         W   VD    + R++C      N+  + + Y   G G+ 
Sbjct: 184 VAAHDTVHFGAI----TSTVTWRFVVDGR--DVRVACTPRFATNAADAAILYAERGGGLT 237

Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--DW 297
            +  Y   +     R   ++ D   P   +   YP +   + K+   R F+ L A   DW
Sbjct: 238 RVLAYQAAEAIRTGRLQVVLADYEAPPLPITIVYPTSRLLSAKV---RTFVDLAAEICDW 294

Query: 298 KF 299
           +F
Sbjct: 295 RF 296


>gi|308188544|ref|YP_003932675.1| hypothetical protein Pvag_3077 [Pantoea vagans C9-1]
 gi|308059054|gb|ADO11226.1| Uncharacterized HTH-type transcriptional regulator yhjC [Pantoea
           vagans C9-1]
          Length = 301

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 24/281 (8%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V  +GSF+ AA +L  S S  S+ +S LE ++G++LF R  R L+ T+ G   + 
Sbjct: 8   RMFVTVLETGSFSAAALRLGTSSSQASKLVSKLEQQLGVQLFKRSTRALSPTDVGRSYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    ET    ++ES+  P+G+L+I+     G  +L   L  F   YP I++ +  
Sbjct: 68  RVKNLLDAFETLDASVRESATTPTGRLKISAPGSFGTAVLSQVLVAFARRYPLIELDVSF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ++I  +  D AIR+   +  SSL+ RKL  +H+   A+P YL+    P   +++ +
Sbjct: 128 SDRAVNIVDEGFDMAIRIGN-LSDSSLVARKLGEVHVRIAASPIYLEQFGTPQHWRDMAQ 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYL------SIMQYCVLG 238
           H          +C+ D N+      P     G   I  + V   L      + +Q  + G
Sbjct: 187 H----------QCIIDTNFRDPWHWPFVSGDGSNEIVTVPVRGRLRFANTEACLQAAMAG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEA 276
            GIA LP +I        ++VR++++  TP   ++  YP A
Sbjct: 237 LGIARLPGFIAAPALQQGDIVRLLDNFDTPPLGLFVVYPPA 277


>gi|317049992|ref|YP_004117640.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951609|gb|ADU71084.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 299

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 136/293 (46%), Gaps = 22/293 (7%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V   GSF  AA +L  S    S+ +S LE E+G++LF R  R L+ TE G   + 
Sbjct: 8   RMFVAVLEVGSFAGAAARLGTSSGQASKLVSRLEQELGVQLFKRSTRALSPTEVGRAYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +T    ++ES+  P+G+L+I+     G  +L   L EF   YP I++ +  
Sbjct: 68  RVKSLLEAFDTLDATVRESATTPTGRLKISAPGTFGTAVLARVLVEFARTYPQIELDVNF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ++I  +  D AIR+ K +  SSLI R+L  + +   A+P YL+    P   ++L  
Sbjct: 128 SDRAVNIVDEGFDMAIRIGK-LDDSSLIARRLGDVAVRVAASPGYLQQHGTPQHWRDLAA 186

Query: 189 HNLITFGDLIPKCMEDFN----WLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240
           H          +C+ D N    W      P G+    P    L  ++  + +Q  + G G
Sbjct: 187 H----------QCISDTNFRDPWHWPFITPCGDSVNMPIRGRLCFSNTEACLQAALAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +I         +V +++   TP   ++  YP A     K +   +F+
Sbjct: 237 IARLPGFIAAPALQRGEIVSLLDAFATPPLGLFALYPPARHLAQKTRLLIDFL 289


>gi|218703457|ref|YP_002410976.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|293403287|ref|ZP_06647378.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298378901|ref|ZP_06988782.1| HTH-type transcriptional regulator yafC [Escherichia coli FVEC1302]
 gi|300900036|ref|ZP_07118233.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|331661578|ref|ZP_08362501.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
 gi|218430554|emb|CAR11420.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|291429140|gb|EFF02160.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298280014|gb|EFI21518.1| HTH-type transcriptional regulator yafC [Escherichia coli FVEC1302]
 gi|300356441|gb|EFJ72311.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|331060000|gb|EGI31964.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
          Length = 304

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETLDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|270262801|ref|ZP_06191072.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043485|gb|EFA16578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 291

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 124/257 (48%), Gaps = 8/257 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  VAR G+   AA +LH+ Q+++ R+I+  E  +G KLF R  +  +L+  
Sbjct: 2   MNWDDARFFLAVARCGTLRKAANELHVDQATVGRRITAFEENLGSKLFIRTPKSFSLSPL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      + + ++    +         G +RIATT  + +  +   LK+    +P I
Sbjct: 62  GEEMLADVMNMENSVQAIGRKATSGDDSLCGNVRIATTDTMAEAFVIPALKDLREQHPLI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+      DIS   AD AIR  +P  S  LI +++ TI M  YA   YL     P  
Sbjct: 122 TVTLLTAVNISDISYRGADLAIRGARP-DSDELIIKRMATIEMGLYATQDYLDKHGLPTK 180

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              L  H+L+ F  +L+P+   +F   A +D     P +  LQ NS L +      G GI
Sbjct: 181 GDHLRGHDLLMFPRELVPRHWNNFCGEALID-----PNV-VLQCNSQLLLRSATRSGLGI 234

Query: 242 ALLPDYIVKDNPNLVRI 258
            LL  ++   +P+LVRI
Sbjct: 235 GLLSSFLADKDPDLVRI 251


>gi|156977891|ref|YP_001448797.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156529485|gb|ABU74570.1| hypothetical protein VIBHAR_06683 [Vibrio harveyi ATCC BAA-1116]
          Length = 302

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 147/286 (51%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGRRYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP +++ L 
Sbjct: 67  EYASQAVNLTQQGVDAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPKVEVDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D+     D  +R+ + + +S+L+ ++L        A+P YL+    P    +L 
Sbjct: 127 LEDAMVDLVEQGFDLGVRIGE-LATSNLVAKRLAPCKSVLCASPEYLEEFGIPTKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +     +   ++ ++ + +     P+ + + VN+  +I Q  + GSGIA LP +
Sbjct: 186 THNCLRYSYF--RGGVEWMFINSGNEYKVLPKGNFV-VNNSEAIRQLLLSGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   +    NL  +ME+   P   +Y  +PE      K++ F +FI
Sbjct: 243 IAGKDFAAGNLKPLMEEFALPEHAIYAVFPERKHMPLKVRVFIDFI 288


>gi|221066656|ref|ZP_03542761.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220711679|gb|EED67047.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 296

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 143/286 (50%), Gaps = 11/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ + ++  E ++G++LF+R  R +T T +G  L   
Sbjct: 9   VFVQVAETRSFVAAGRLLGVSASAVGKSVARFEEKLGVRLFHRSTRSITPTAEGLLLLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  Q EL ++S  P G+LR+  ++ L   L+   L +F+  YPDIQ+ L   
Sbjct: 69  SRRILSEIEAAQAELSQASSAPRGRLRV--SLPLVSTLVLPVLADFMHEYPDIQLDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L+ RKL    M   A+P YL     P  +Q+L  H
Sbjct: 127 DRLVDVVEEGFDAVVRTGEP-ADSRLVARKLGHFKMVLVASPEYLATYGSPSKVQDLQSH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
             + F    P   +   W    + P GE P++    V N+  +   + + G GIA LPD+
Sbjct: 186 LCLHF--RWPHSGKLEAWPLPPE-PDGEPPKLPVSMVCNNIETRACFALQGLGIACLPDF 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +++   +  LVR+M +        +  +P     + K++A  +F+
Sbjct: 243 AIREALADGRLVRVMPEQAQREGIFHILWPAGRHVSPKVRALVDFL 288


>gi|237808260|ref|YP_002892700.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500521|gb|ACQ93114.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 297

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 132/275 (48%), Gaps = 7/275 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L  F VVAR  SFT AA QL +SQS++S  I  LE ++GI+L  R  RG++ TE 
Sbjct: 4   IDLNNLLAFIVVARERSFTRAAAQLGVSQSALSHTIRRLEEKMGIRLLTRTTRGVSTTEA 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+      Y  ++T    L   + KP+G +RI+T       +L   L + L LYP++
Sbjct: 64  GERLYINLGPHYEGIQTELSALYALNDKPAGTIRISTHDRPADTILWPKLSKLLPLYPEL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I++ ++ + IDI  +  D  +RL   +    +  R    + M    AP Y KN   P +
Sbjct: 124 NIEISINYELIDIVAERFDAGVRLGDQVAKDMIAVRISPDVRMAVVGAPSYFKNRVIPQT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
            QEL   N I     +P     + W       I   ++    + N  + I+   + G GI
Sbjct: 184 PQELTGQNCIRL--RLPTHGGIYAWEFEKGGQILHVQVQGQMIFNQSVHILNAALQGYGI 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           A LP+  +K   D   L++++E    P+F  Y  Y
Sbjct: 242 AYLPEEQIKPYVDQGQLIQLLEP-WCPTFPGYHLY 275


>gi|170695208|ref|ZP_02886355.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170139828|gb|EDT08009.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 336

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 130/286 (45%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE G+  
Sbjct: 6   SMRVFVKVADLGSFVRAANALDLSTAVVTRHVADLEARLGARLLNRTTRRLSLTESGATY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE  +  L     +P G LRI   +  G   L   ++ +   YPD+   +
Sbjct: 66  LERVRHLLDDLEGVEQMLAARHHEPVGTLRIVAPVVFGLQSLAPAVQSYAARYPDVVPDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  D+  +  D  I + +P +S+S++ R+L T  +   A P YL     P    +L
Sbjct: 126 TLADRQADLVEEGFDVGIMVGRPARSASIVTRRLTTCQLTVCATPAYLAQHGTPTRPDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +H  ++      +  E          P G  R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 LRHPCLS------RAPEQGGEERVFSGPEGLVRVRTTNAIAANNSEMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LV ++ D   P   +   YP  L    K++ F
Sbjct: 240 LPSYLIGRDLASGRLVELLGDYRLPEIEITIVYPSRLHLPAKVRTF 285


>gi|53717239|ref|YP_106069.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53721325|ref|YP_110310.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|67639933|ref|ZP_00438760.1| putative HTH-type transcriptional regulator YhjC [Burkholderia
           mallei GB8 horse 4]
 gi|76817757|ref|YP_336995.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|124381525|ref|YP_001025935.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126445248|ref|YP_001061517.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126446273|ref|YP_001078024.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126456478|ref|YP_001074457.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134280695|ref|ZP_01767405.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|166999802|ref|ZP_02265632.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167722311|ref|ZP_02405547.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167741307|ref|ZP_02414081.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167818483|ref|ZP_02450163.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167826870|ref|ZP_02458341.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167848383|ref|ZP_02473891.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167896938|ref|ZP_02484340.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167905321|ref|ZP_02492526.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167913619|ref|ZP_02500710.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167921562|ref|ZP_02508653.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217422973|ref|ZP_03454475.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226194807|ref|ZP_03790399.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237507442|ref|ZP_04520157.1| LysR substrate binding domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|242312205|ref|ZP_04811222.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254176362|ref|ZP_04883020.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254189398|ref|ZP_04895908.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195563|ref|ZP_04901991.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254200925|ref|ZP_04907290.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254204888|ref|ZP_04911241.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254264083|ref|ZP_04954948.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254299455|ref|ZP_04966904.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254359007|ref|ZP_04975279.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52211739|emb|CAH37738.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|52423209|gb|AAU46779.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76582230|gb|ABA51704.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126224739|gb|ABN88244.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126230246|gb|ABN93659.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126239127|gb|ABO02239.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134247717|gb|EBA47801.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147748537|gb|EDK55612.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754474|gb|EDK61538.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148028194|gb|EDK86154.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157809376|gb|EDO86546.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157937076|gb|EDO92746.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160697404|gb|EDP87374.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169652310|gb|EDS85003.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|217393881|gb|EEC33901.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225933151|gb|EEH29146.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|234999647|gb|EEP49071.1| LysR substrate binding domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|238520553|gb|EEP84012.1| putative HTH-type transcriptional regulator YhjC [Burkholderia
           mallei GB8 horse 4]
 gi|242135444|gb|EES21847.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243064118|gb|EES46304.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254215085|gb|EET04470.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|261826363|gb|ABM99362.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 334

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 144/287 (50%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLR+     +G+ +L  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQVNNRKPHGKLRVDMPGSIGRLILIPSLCEFHSRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP +I+EL 
Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFEGTTVASPAYLEKYGEPQTIEELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +     +     +W   +D    E +++ L  VN   + +   + G G+   P 
Sbjct: 186 QHKAVNY--FSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGLEGFGLIQPPL 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V     N  L  ++         +   YP +   + K++ F +++
Sbjct: 244 FMVLPHLRNGTLKEVLPGHKPLPMPISVVYPHSRHLSPKVRVFVDWV 290


>gi|90424209|ref|YP_532579.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90106223|gb|ABD88260.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 303

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V  SGSF+ AA  L++SQ ++S+Q++ LE  +G +L  R++R L +T  G  
Sbjct: 5   DAMRMFVRVVESGSFSQAARDLNVSQPTVSKQLAALELRLGTQLLSRNSRALAVTPAGQD 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  T  +   ++  +  + E    PSG +R+  +   G+  +   L +F   +P++ I+
Sbjct: 65  YYEATVRILQDIDVVEERILEGQAAPSGLVRVTLSPAFGRMFVIPRLPDFRRRFPNVAIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +  + +D+  +  D AIR+ + +  S+L+ R +  + M   A+  YL     P ++ E
Sbjct: 125 MEISGRHVDLIEEGMDVAIRIGR-LSDSALVARHIGDMRMITVASAGYLAQHGTPQTVNE 183

Query: 186 LDKHNLITF---GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H  +++   GD+I        W      RP+        + N    +    + G GI
Sbjct: 184 LRDHQRVSYIYQGDII-------GWGFQVAGRPVTLDGGGAFRTNDAEHVRGAVLAGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A    ++  D   +  +VRI++    PSF +        +   +++ F +F+
Sbjct: 237 AHHASWLFTDVVASGEVVRILDQHAPPSFPINAVTAAGRRMPSRVRQFIDFL 288


>gi|127512468|ref|YP_001093665.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126637763|gb|ABO23406.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 289

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 11/290 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT A ++L +S + +SRQ+  LE  +  KL YR  R +++TE+G
Sbjct: 3   EWEGVSEFVAVAETESFTKAGKRLGISTAQVSRQVGALEQRLDTKLLYRTTRKVSMTEEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R   +V   LE  +  L      P G LR+   +  G+  +   + +FLL YP+++
Sbjct: 63  HLYYRHCRQVLDGLEEAERALSSLRGLPQGLLRMTAPVAYGEKYILPVVNDFLLAYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L N+ + +     D AIR+ K +  SSLI +++     +  A+P YLK   EP S+
Sbjct: 123 VDIALTNRQVRLVDAGIDLAIRIGK-LADSSLIAKRISQRINYVCASPDYLKRFGEPHSL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +HN +  G+       D+       R         L+ N+   +    + G G+  
Sbjct: 182 SELSRHNCL-IGN------HDYWRFLEQGRERQLKIKGNLRCNTGHGLRDAALKGLGLVQ 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+Y +  +     LV ++     P+  V+  YP+    + K+K    F+
Sbjct: 235 LPNYYIGQDLKAGRLVSVLNAYQEPNEGVWALYPQNRHLSPKVKLMVEFL 284


>gi|332531567|ref|ZP_08407464.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332038930|gb|EGI75359.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 310

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 141/294 (47%), Gaps = 15/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +  F  VARSG F+ A+  L +  +++SR+++ LE  +G++LF R  R + LT+ G 
Sbjct: 4   FDAITAFVAVARSGGFSAASRALGIPVANVSRKVALLEEALGVRLFVRTTRHVALTDGGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     S V   +     E+     +P G L I   +  GQ  LQ  + EFL  YP + +
Sbjct: 64  RYFETCSRVIDAMREADEEVSGEYREPKGDLVITAPLGFGQQHLQPVVHEFLRAYPQVNV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL LD++ + +  ++ DCA+R+   +  SSL+ R+L +I +   AAP YL+    PL + 
Sbjct: 124 QLQLDDRVLPLVEEHVDCALRIGT-LADSSLVARELGSIRLVVCAAPAYLEARGTPLELS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLG 238
            L  H+ I++  L        +W  T+ R  G+ R   + V   L      S +Q  + G
Sbjct: 183 ALAVHDGISWTGL----GLHKSWTFTL-RQGGQLREQQVPVPVRLATSTPESALQAAIAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G+     Y V  +     LV ++    +    V   YP       KL+AF +F
Sbjct: 238 LGLVQATSYQVAPHVAAGRLVPVLTAHDSEPLPVSLVYPSKRLIPLKLRAFLDF 291


>gi|163744014|ref|ZP_02151382.1| putative transcription regulator protein [Phaeobacter gallaeciensis
           2.10]
 gi|161382702|gb|EDQ07103.1| putative transcription regulator protein [Phaeobacter gallaeciensis
           2.10]
          Length = 305

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 150/292 (51%), Gaps = 21/292 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--H 67
           V   VA +  F  AA +L +++S++S++I+ +E  +G +LF+R  R ++LTE G     H
Sbjct: 11  VVVAVAETQGFAAAARRLGVTKSAVSKRITQIERRLGAQLFHRSTRNVSLTEAGEHFYAH 70

Query: 68  RVTSE-VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            V ++    + E + + LQE+   P G+LR+   +  G+  +   +  FL  +P + +++
Sbjct: 71  AVRAQDAAQEAEDSVLALQEA---PKGRLRVNVPMAFGRLHVAPLISTFLARHPGVSMEM 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D++  D+  D  D A+R    +  S+L+ RK+  +H    AAP YL+    P ++++L
Sbjct: 128 VMDDRVADLFADGFDLALR-GGTLADSALVARKIAPLHNVLVAAPAYLERHGAPEAVRDL 186

Query: 187 DKHNLITFGDLIPKCMED--FNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             HN + +     +  ++  FN    V+  RP G        VN+  ++ +  + G+GI 
Sbjct: 187 STHNCLQYS--YSRDFQEWVFNSGGEVETFRPGG-----SYSVNNGDALREAILGGTGIG 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LP +    +     LVR++     PS T+Y  YPE      K++ F +FI 
Sbjct: 240 RLPTFSAGPDLATGRLVRVLPQCRLPSQTLYAVYPERRYLPAKVRVFIDFIL 291


>gi|170701385|ref|ZP_02892345.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133694|gb|EDT02062.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 345

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 143/289 (49%), Gaps = 15/289 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--- 66
            F  VA  GSFT AAE+L + + ++SR +  LE ++  +LF R  R   LT +G +    
Sbjct: 35  AFVAVASEGSFTKAAERLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGRRFFEN 94

Query: 67  -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H+  +++   +    +EL++    P G +RI++ +  G+ ++   L++F   YPDI I 
Sbjct: 95  CHQGVAQIVEAM-NDMLELRQG--PPRGLIRISSAVGFGRKIVAPLLEKFAQAYPDIVID 151

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD++ ID+  +  D + R  + I+ SS+I R+L+ + M   AAP Y+     P  I +
Sbjct: 152 LLLDDRPIDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVARHGLPQRIDD 210

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           LD+H  I F     +    F W   VD R       S L  N    +++  + G+GIA +
Sbjct: 211 LDQHECINFRSASGRV---FEWEFNVDGRAQKYLPTSRLTFNDADLVLRAVLNGAGIAQM 267

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y ++D   +  LV  +   +      Y CY        +++ F +F+
Sbjct: 268 AGYQIRDHLASKELVVALAKHVPEDRGHYICYLSRQHLPTRIRIFVDFM 316


>gi|325496134|gb|EGC93993.1| hypothetical protein ECD227_0231 [Escherichia fergusonii ECD227]
          Length = 304

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETLDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|295675831|ref|YP_003604355.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295435674|gb|ADG14844.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 306

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 143/295 (48%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE G+
Sbjct: 4   FEAMEIFTRVVEAKSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   +  L      P+G +R+ T+  L ++LL   L +F   YP I +
Sbjct: 64  SFYERCVRILADVADAESSLSNKRENPAGTIRVDTSGTLARSLLLPALDDFYEQYPAIDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +++ID+  D  DC IR+  P + SSL+ +++    +   A+P YL+    P+++ 
Sbjct: 124 RLGLADRNIDLIQDGVDCVIRMGTP-EESSLVAKRIGLARIVTCASPAYLQKFGTPITLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  + +  +  +    F +   VD  I    + S L VN     +   VLG GI  
Sbjct: 183 DLGEHRAVNY--VSARSGRTFPFEFEVDGEIERVAMDSTLAVNDGSVYITAGVLGHGIIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              ++V    +   L  I+ +  +P   +   Y      + +L+AF +++   AR
Sbjct: 241 PSRFMVAELIEQGALTEILGNYTSPGTPLSILYAHRRNLSSRLRAFIDWVVELAR 295


>gi|50084813|ref|YP_046323.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49530789|emb|CAG68501.1| putative transcriptional regulator (LysR family) [Acinetobacter sp.
           ADP1]
          Length = 305

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 142/295 (48%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 7   MFTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSSRHFAVT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S+KP G ++++  +D+ QN +   L EFL LYP
Sbjct: 67  DIGMNIYRHAQVMMNAAQAAHDLVDHLSIKPRGVIKVSVPVDIAQNQMSKLLPEFLKLYP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QL++ N+ +DI  +  D A+R+R  +    SL+ R+   I  H +A+  YL     
Sbjct: 127 EIRVQLMISNRRVDIVNEGIDIALRVRSKLDDDPSLVLRQFAQIEQHLFASQAYLNEFGS 186

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
                +L +H  ++  D     ++    L   +  + + +++  +  ++ L + Q     
Sbjct: 187 VKIPDDLPQHRFLSLSD---DHLDQQFTLYDQNNQLHKVKVNPVVMASNLLMLAQLASQN 243

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLPD I  D   +  LVR++ +   P    +  YP      G L A R FI
Sbjct: 244 CGIALLPDTIACDYIKSGELVRVLPEWKAPHGIFHAVYP---SRRGLLPAVRVFI 295


>gi|330831558|ref|YP_004394510.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328806694|gb|AEB51893.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 301

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 145/299 (48%), Gaps = 15/299 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W+ +  F  VA  G FT AA +L +S + +SRQ++ LE  +  KL  R  R + LTE 
Sbjct: 2   FGWEGICEFVSVAEQGGFTPAARKLGVSVAQVSRQVAQLEDRLQAKLLLRTTRQVRLTEL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R   ++   L   ++ +      P G LRI   +  G++ +   + +F++ +P +
Sbjct: 62  GEIYYRHCRQLLDNLYEAELAVGRHQAVPQGTLRITAPVSYGESRIAPLVNDFMVRFPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L N+ +D+  +  D A+RL   ++ S+L+ RKL     +  A+P Y      P S
Sbjct: 122 EVTLNLTNQLLDLVHEGYDLALRLGH-LKDSTLVARKLAQRVPYVCASPAYTARHGIPNS 180

Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + EL +H  L+   D          W  T+D RP        LQ NS  +++   + G G
Sbjct: 181 LSELTRHTCLVGNSD---------EWHFTLDGRPHSVRVRGLLQCNSGHALLDAALKGIG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  LPDY V D+     L+ ++ ++  P+  ++  YP     + K++   +++  +  D
Sbjct: 232 IIQLPDYYVSDHLARGELIELLPELRAPAEGIWALYPHNRHLSPKVRLLVDYLAERLSD 290


>gi|170728083|ref|YP_001762109.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813430|gb|ACA88014.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 319

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 144/291 (49%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  V +SG F+ AAE L  S S +S++++ LE+ +G++L  R  R + LT +G 
Sbjct: 26  FDGVVIFTQVVKSGGFSAAAEALGHSTSYVSKEVNKLESRLGVRLLNRTTRSIGLTPEGQ 85

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+   ++    E     + +  V P G L+I++ +    N L+  L +++L YP++ +
Sbjct: 86  AYHQQCLQLVQDAEQAVQLITQHDVSPKGHLKISSPVGFANNYLRPILSQYMLNYPNVNL 145

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L+++ +D+  +  D  IR  + +  SSLI RK+ +   +  A P YL     P   Q
Sbjct: 146 ELDLNDRRVDVISEGYDLVIRASQNLDESSLICRKIYSCKAYTVATPEYLSKHGRPYHPQ 205

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL KHN + + +L  K    +++     +         +  NS        + G GI  L
Sbjct: 206 ELAKHNCLCYSNL--KLPTRWHYSDKQGKSFFVDVRQKVLCNSGEMEFAMTLDGLGICRL 263

Query: 245 PDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           P++ ++D     ++  +++ P +      V+  YP     + K++AF + +
Sbjct: 264 PEFYLQDTLETGKL--EILFPQYPTTDIDVFVVYPSRKHLSPKVRAFIDLV 312


>gi|94501938|ref|ZP_01308447.1| probable transcriptional regulator, LysR family protein
           [Oceanobacter sp. RED65]
 gi|94425932|gb|EAT10931.1| probable transcriptional regulator, LysR family protein
           [Oceanobacter sp. RED65]
          Length = 290

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 142/293 (48%), Gaps = 27/293 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  VA  GSFT AA++L  S   IS+ +  LE+ + I+L  R  R + LTE G+ 
Sbjct: 5   DTIRAFIAVAAEGSFTKAADRLDTSPQLISKYMGQLESRLNIRLLNRTTRKVQLTEAGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++ ++ +  + E+ +    P G LRI+  +      +   L+EF  LYPDI I 
Sbjct: 65  YLEQAQDLINRFDAMENEIGDLQTLPQGNLRISAPVSFANLHMGALLREFQSLYPDISID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+++ +DI  +  D A+R+ + +Q SSLI + +  I +   A+  YL+    P +  +
Sbjct: 125 LQLNDRKVDIVEEGYDVALRIGQ-LQDSSLIAKYIAPIQLRICASKDYLQKNGIPKTEAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  +++              A  ++ I +   + +  N+   ++ + + GSGIA+ P
Sbjct: 184 LKQHTYLSYS------------YAEQNQSIFKNAKTVITCNNGDILVDHAIAGSGIAMQP 231

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +I  +     +LV I+E+    +  +Y  Y           A R FI LK R
Sbjct: 232 TFICGEALKRGDLVSILENYTPKALGLYAMY-----------AHRKFIPLKVR 273


>gi|221068336|ref|ZP_03544441.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713359|gb|EED68727.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 322

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 7/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D++ L VF  VA   SFT AA+QL L++S +S  +  LE ++G +L  R  R + LT 
Sbjct: 19  SMDFNALHVFTRVAELSSFTLAADQLGLTKSRVSTVVQQLERQLGTRLLQRTTRHVRLTA 78

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +    + E+   LE  Q   Q ++    G LRI     L ++++   L EFL  +P 
Sbjct: 79  DGEQFLERSKELMADLEQLQAMFQPATSGLRGSLRIDMPNTLARDVVLPKLPEFLSAHPL 138

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++ +D+  +  DC +R+  P+  + LI R L  + M   A+P YL+    P 
Sbjct: 139 LEVGISTSDRRVDVVQEGFDCVVRI-GPLADTDLIARTLGALEMCNLASPAYLERHGTPA 197

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSG 240
           ++ +L +H +I + + + +      W     R    +P    L VN   +    C+ G G
Sbjct: 198 TLADLSRHRIIHYANQLGR--HGAGWEYQRGRETALQPMRCALVVNGTDAYQAACLAGLG 255

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   P    +   D   LV +M D       V   YP       ++ AF N+I
Sbjct: 256 LIQAPVRGARHLLDQGLLVEVMPDFKAAPMPVSLLYPHRRHIAPRVTAFLNWI 308


>gi|299132072|ref|ZP_07025267.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gi|298592209|gb|EFI52409.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 314

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 145/295 (49%), Gaps = 16/295 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ + +F  V    SF  AA +L LS++++S+ ++ LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEAMAIFAKVVELRSFAAAASELALSKATVSKAVTRLEERLGARLFNRSSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +++    E  + E    +  P G +R+A  +  GQ ++   L EFL  YPD+ 
Sbjct: 66  RALSVRAAQLLADGEEAENEALSQAASPRGLVRLAVPMTFGQRVIAPLLPEFLAQYPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D  +R+ + +  SSL+ R+L  + ++  AAP YLK    P   
Sbjct: 126 IDLHLSDAMVDLIGEGFDIGVRIAR-LPDSSLVARRLCPMPVYTVAAPSYLKKYGRPTHP 184

Query: 184 QELDKHNLITFG-DLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             L +H   T+     P+    FN    A   RP G+     L++N+  +++   + G G
Sbjct: 185 MHLAQHRCFTYAYRTTPEVWHYFNDAGEAVSVRPSGQ-----LRINNGEAVLPALIAGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVI-----TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LPD+I+ +   + R   +VI      P   V+   P       +++A   F+
Sbjct: 240 IADLPDFIIGE--AIARKQVEVILKGWKQPEGAVHLVMPPGGPRPARVEALVEFL 292


>gi|317405599|gb|EFV85900.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 298

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 136/286 (47%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  V   G F  A+ QL LS +++S+ I+ LE  V ++L  R  R ++LTE G + +
Sbjct: 7   LRVFRQVVEQGGFAAASRQLGLSPAAVSKNIAELEAHVAVRLLNRTTRRMSLTEAGRQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L    + +     +P+G LR++  + L   LL   +  FL  +P + + L 
Sbjct: 67  EQVARILDDLHDADMSMGPLQQEPTGTLRVSAPMSLSLTLLATAMPRFLARHPRLSLDLH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ ID+  +  D AIR    ++ SSL+ RKL+T+      AP YL+   EP +  +L 
Sbjct: 127 LEDRRIDLIREGFDVAIRGSDRLEESSLVARKLMTLEHVLCGAPAYLRQHGEPQAPADLR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +   + F          F     V+R     R    +VNS L++      G G++L+P  
Sbjct: 187 RLECVRFTLSGHADEWTFQRAGQVERVQVRGRY---KVNSSLAVRDALRAGLGVSLVPRV 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+ +     L +++ D       VY  YP       K++A  +F+
Sbjct: 244 YVQADLEIGALRQVLTDWTPVETDVYVVYPSRRHMVAKVRALVDFL 289


>gi|146281936|ref|YP_001172089.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145570141|gb|ABP79247.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501]
          Length = 299

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 133/281 (47%), Gaps = 25/281 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  V   GSF  AAE+L +S S +SRQI+ LE  +  +L YR  R ++LTE G 
Sbjct: 4   WEGLDEFVAVVECGSFMRAAERLRVSSSHVSRQIARLEERLQARLLYRTTRRVSLTEAGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +   + + +    P+G LR+   +  G+  +   + EF+  +P +++
Sbjct: 64  TFFARCQRLIEERDDAFLAISDLHSAPTGLLRMTAAVAYGERFIVPLVNEFMARHPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL K +  S L+  ++    M+  AAP YL+    P ++ 
Sbjct: 124 DIELSNRTLDLVQEGYDLAIRLGK-LGESRLVAARIAPRAMYLCAAPGYLERYGRPHTLS 182

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVL 237
           EL +HN LI   D+         W    D      +P G  R      NS  +++   + 
Sbjct: 183 ELARHNCLIGTSDV---------WSFQSDGREQHFKPSGNWR-----CNSGQAVLDAALR 228

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           G G+  LPDY V +      LV ++E    P   V+  YP+
Sbjct: 229 GFGLCQLPDYYVLEPLRRGELVSLLEANQPPDTAVWAVYPQ 269


>gi|323528454|ref|YP_004230606.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385456|gb|ADX57546.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 334

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 142/287 (49%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q  + KP GKLRI     +G+ L+   L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPQLCEFHKRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y++    P S+++LD
Sbjct: 127 LSDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPEYIQRAGMPTSLEDLD 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +     +     +W   VD    E ++ S + VN   + +   + G G+     
Sbjct: 186 NHKAVNY--FSSRTGRTIDWAFLVDGKEVEVKMKSIVSVNDADAYVTCGLEGFGLIQPAL 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V     +  LV ++ ++      +   YP +   + K++ F ++I
Sbjct: 244 FMVLPHLRSGQLVEVLPELKPLPMPISAVYPHSRHLSPKVRVFVDWI 290


>gi|91209276|ref|YP_539262.1| putative LysR-type transcriptional regulator [Escherichia coli
           UTI89]
 gi|117622490|ref|YP_851403.1| putative transcriptional regulator LYSR-type [Escherichia coli APEC
           O1]
 gi|218557144|ref|YP_002390057.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|218688078|ref|YP_002396290.1| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|237707798|ref|ZP_04538279.1| transcriptional regulator [Escherichia sp. 3_2_53FAA]
 gi|306813372|ref|ZP_07447565.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
 gi|91070850|gb|ABE05731.1| putative transcriptional regulator LYSR-type [Escherichia coli
           UTI89]
 gi|115511614|gb|ABI99688.1| putative transcriptional regulator LYSR-type [Escherichia coli APEC
           O1]
 gi|218363913|emb|CAR01578.1| putative DNA-binding transcriptional regulator [Escherichia coli
           S88]
 gi|218425642|emb|CAR06429.1| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|222032033|emb|CAP74772.1| Uncharacterized HTH-type transcriptional regulator [Escherichia
           coli LF82]
 gi|226899008|gb|EEH85267.1| transcriptional regulator [Escherichia sp. 3_2_53FAA]
 gi|294489865|gb|ADE88621.1| transcriptional regulator, LysR family [Escherichia coli IHE3034]
 gi|305854135|gb|EFM54574.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
 gi|307628311|gb|ADN72615.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UM146]
 gi|312944811|gb|ADR25638.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315289708|gb|EFU49101.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|323948758|gb|EGB44658.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323958792|gb|EGB54491.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
          Length = 304

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           E+G +  HRV S +  ++   + E+ E+   P G LRI     +  + L   +K F   Y
Sbjct: 61  EEGERYFHRVQS-ILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +
Sbjct: 120 PEVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISCYGK 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G
Sbjct: 179 PETIDDLKQHICLRFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|53721469|ref|YP_110454.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76817347|ref|YP_337126.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126457173|ref|YP_001074619.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167818674|ref|ZP_02450354.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167848545|ref|ZP_02474053.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|237510359|ref|ZP_04523074.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242313778|ref|ZP_04812795.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254185351|ref|ZP_04891939.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254187230|ref|ZP_04893744.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198845|ref|ZP_04905263.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254264514|ref|ZP_04955379.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254296770|ref|ZP_04964224.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52211883|emb|CAH37887.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|76581820|gb|ABA51294.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|126230941|gb|ABN94354.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|157806631|gb|EDO83801.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157934912|gb|EDO90582.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169657017|gb|EDS88411.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184209586|gb|EDU06629.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|235002564|gb|EEP51988.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242137017|gb|EES23420.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254215516|gb|EET04901.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 299

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 140/299 (46%), Gaps = 16/299 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +TE G 
Sbjct: 3   FDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTELGH 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +LH   + +   +  T+  +        G L+I+  +  G   L   + EFL+ +P +++
Sbjct: 63  ELHARATRILADIAETEEAMSARRGDLRGTLKISAPMSFGIAHLSPLIAEFLVRHPAVRL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y +    P +  
Sbjct: 123 HVELSDRHVDLIGEGFDLALRI-GALPDSTLIARRLGELRMVACCSPAYRRKHGAPATPA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L     + +G           W   +D   G  R       L  N+   +    V G G
Sbjct: 182 DLHGRACLLYGQ-----EGRTGWEFMID---GARRTFEVQGALLANNGDVVRDAAVAGLG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IALLP +IV    D   LV ++E        +   YP+  ++    + F  FI  + R+
Sbjct: 234 IALLPHFIVAHALDAGRLVAVLEPFAQAPLPINAVYPQHRQDMAACRTFLGFIEERLRE 292


>gi|83648931|ref|YP_437366.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83636974|gb|ABC32941.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 299

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 144/288 (50%), Gaps = 5/288 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+VF  VA +GSFT AA+   L +S++S  +  LE  +G +L +R  R ++LT  G+ 
Sbjct: 5   DALQVFARVAETGSFTRAADLCELPRSTVSSVVQKLEASLGARLLHRTTRRVSLTHDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  ++E  +   +E   + SGKL++      G  ++   L +F   YP+I+++
Sbjct: 65  LLERCRHLLTEIEEIESMFREPGARVSGKLKVDVPSRFGSRVIAPALPDFFERYPEIELE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC +R+  P  S+SL+ R L  + +   A+P YL     P +  +
Sbjct: 125 LGATDRTVDLIQEGVDCVVRVGDP-GSASLVARPLGKMELVNCASPAYLARYGAPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + F        E + ++   +    E R S + VN+  + +   + G G+   P
Sbjct: 184 LSEHRAVRFASPNTGRAEPWEYVQDGELHYVEMR-SWVTVNNAETYVACALAGMGLLQAP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +Y V+    + +LV ++ +    +  +Y  YP   + + +++ F +++
Sbjct: 243 EYDVRHLLQSGDLVEVLPNARAEAMQIYAMYPHRRQLSRRVRVFIDWV 290


>gi|182677173|ref|YP_001831319.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633056|gb|ACB93830.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 298

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 8/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FDW+ LR F  VAR+G+ + AA +L +  +++ R+I GLE  +G K+F R+ RG  +T+
Sbjct: 4   GFDWNDLRFFLAVARAGTVSLAARRLGVDHATVIRRIDGLEHALGAKIFERNPRGYNVTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G KL      +  + +  + EL  S    SG +RI++    G   L   L  F   +P+
Sbjct: 64  KGEKLLASAQMIESEAQKAEQELAGSHQTVSGLVRISSLEGFGNFFLASRLPRFTANHPN 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+   + + +S   AD AI L+ P ++   ++ +L    +  Y +  YL N +   
Sbjct: 124 ITLELLNIQQIVALSRREADLAITLQPP-ETGRFVRERLTDYMLFVYGSRAYLDNAKPIR 182

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + ++   H    +  DL+       ++L  V +P    RI   Q +S  + M+    G G
Sbjct: 183 TREDFIDHPFSGYIDDLV--FTRGLDYLHEV-KPGLRARI---QSSSLHAQMEAACAGFG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + +LP +I    P LV ++   +    + +         + +++A R+FIF
Sbjct: 237 LCILPAFIAAHRPELVPVLPQEVALKRSYWLVADADAAMSSRIRAVRHFIF 287


>gi|146307045|ref|YP_001187510.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575246|gb|ABP84778.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 308

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 142/296 (47%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AA  LH+S++S+++ I  LE  + ++L  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTQAAATLHMSKTSVTQLIQQLEARLRVRLLNRTTRKVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  +++ P G+LR+     L + LL   L  F   YP+IQ+
Sbjct: 64  AYYERVVRLLADMDDAETSLSSAALAPRGRLRVDVPSPLARMLLIPALPAFYERYPEIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +DI  +  DC +R  + I   SL+ R +  + +  YA P YL+    P   +
Sbjct: 124 TMGVSDRIVDIIGENVDCVVRGGE-ITDQSLVARHIGDLQLGIYATPGYLQRAGTPGHPR 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL +  H+ + F     G  +P  M+            G P ++    N+YL+     + 
Sbjct: 183 ELGEGAHSTVGFLWSRTGKALPYAMQRGEERIEAQ---GRPLLTVDDGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  LP Y+ +    +  LVR+ +D       +Y  +P     + KL+ F +++
Sbjct: 237 GLGMLWLPHYMARPHLASGELVRLFDDWQMTPMPMYLAFPPNRHVSAKLRVFIDWV 292


>gi|78061145|ref|YP_371053.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969030|gb|ABB10409.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 334

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 106/187 (56%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTSSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP +I +L+
Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFECVTVASPDYLERHGEPQTIDDLN 185

Query: 188 KHNLITF 194
           +H  + +
Sbjct: 186 QHKAVNY 192


>gi|193067760|ref|ZP_03048727.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|192959172|gb|EDV89608.1| transcriptional regulator, LysR family [Escherichia coli E110019]
          Length = 304

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 144/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +    L   +K F   YP
Sbjct: 61  EEGQRYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLYFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|260770243|ref|ZP_05879176.1| transcriptional regulator LysR family protein [Vibrio furnissii CIP
           102972]
 gi|260615581|gb|EEX40767.1| transcriptional regulator LysR family protein [Vibrio furnissii CIP
           102972]
          Length = 292

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 142/303 (46%), Gaps = 25/303 (8%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GSF  AAE+L +S    S+ IS LE ++G++L  R  R L +TE G   +  
Sbjct: 1   MFVAVMELGSFAKAAERLAISSGQASKLISRLEQDLGVQLVKRSTRSLAVTEVGQAYYER 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V   L+     ++ +S  PSG+LRI+  +  GQ+ L  +L +F   +PDI + +   
Sbjct: 61  IKRVLDDLDALDDAIRNASRLPSGRLRISAPVTFGQSQLAPSLIDFSKQFPDITLDVKFS 120

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +++  +  D A+R+ K +  SSLI RKL  + +   A+PHYL     P  I++L +H
Sbjct: 121 DRSVNVVDEGFDLALRIGK-LDDSSLIARKLCDVRVITLASPHYLSQHGTPTHIRDLAQH 179

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYL--SIMQYCVLGS----GI 241
           +          C+ D N+      P    +  +    VN  L  S  + C+  +    GI
Sbjct: 180 H----------CIIDTNFRDPYHWPYLNEQGHVHDFAVNGRLKFSNAEVCLKAACADLGI 229

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKAR 295
             LP ++         LV I++    P   +Y  YP A       +AF +F+   F    
Sbjct: 230 TRLPTFVAAQALKEQQLVAILQQYEVPPLGLYALYPPAKHLAQSSRAFIDFLVNRFANGA 289

Query: 296 DWK 298
           DW+
Sbjct: 290 DWE 292


>gi|299066042|emb|CBJ37223.1| Transcriptional regulator, LysR family [Ralstonia solanacearum
           CMR15]
          Length = 294

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 126/257 (49%), Gaps = 6/257 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  VAR+ +   AA++L + Q+++ R+I+ LE E+  KLF R +  L LT  
Sbjct: 1   MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLVLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      + H   T +  +  +  + +G +R+ATT  L    +   + +  L +P I
Sbjct: 61  GEALIGPAETMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +      +++   AD A+R  +P  +  LI R++ TI    YA+  Y++   EP+ 
Sbjct: 121 DIVCLAAKSIANLTKREADVAVRTLRP-TAPDLIARRVATIETGLYASHGYVRARGEPVE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+    L P+    + W A    P+   R+  LQ +S ++I +  V G G++
Sbjct: 180 GTAFAGHDLV----LYPRSEVPWMWEALCGEPVTPSRV-VLQSSSVMTIFEAVVAGIGVS 234

Query: 243 LLPDYIVKDNPNLVRIM 259
            L       +P LVR++
Sbjct: 235 ELVCCRADAHPELVRVL 251


>gi|271499563|ref|YP_003332588.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343118|gb|ACZ75883.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 303

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 149/287 (51%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ + +  LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVQVAETRSFVAAGRLLGVSASAVGKSVVRLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  ++EL +++  P G+LR+  ++ L  +L+   L EF+  YP+I++ L   
Sbjct: 69  SRRILAEIEAAELELSQATAAPRGRLRV--SLPLVSSLVLPVLGEFMREYPEIELDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R+L T  M   A+P YL     P+   +L +H
Sbjct: 127 DRMVDVVEEGFDAVVRTGEP-ADSRLSARRLGTFEMQLVASPDYLARRGTPMLPADLRQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPR---ISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + + +    P   +  NW   + +  GEP     + +  N+  + + + + G GIA LPD
Sbjct: 186 SCLHY--RWPNSGKLENW--ALRQTPGEPEWQLPTSMICNNIETRVCFALQGLGIAYLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++   +  L  I+ + +  S   +  +P +   + K++A  +F+
Sbjct: 242 FAIREPLADGRLKPILAEYVQHSGVFHVLWPASKHPSPKVRALVDFL 288


>gi|212636847|ref|YP_002313372.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212558331|gb|ACJ30785.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 296

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 143/288 (49%), Gaps = 11/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  V +SG F+ AA+ L  S S +S++++ LE  +G++L  R  R + LT +G 
Sbjct: 5   FDGVVIFAQVVKSGGFSAAADALGHSTSYVSKEVNKLEARLGVRLLNRTTRSIGLTPEGD 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++    E     + +  V P G L+++  I   Q  L+  + E+L LYP++ +
Sbjct: 65  AYYQQCLQLISDAELAVGLITQHDVSPKGVLKLSCPIGFAQTHLKAIISEYLQLYPNVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +   D+  D  D AIR    +  SSLI RKL +      A+  Y+    +P   +
Sbjct: 125 ELDLSDNRTDVIADGYDLAIRASSQLDESSLICRKLYSCGAFTVASKAYISRHGKPYHPR 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSGI 241
           EL  HN I + +L  K    ++++    +P      P++ C   +  L++    + G G+
Sbjct: 185 ELATHNGICYSNL--KTPSRWDYVDKDGKPFSVDVRPKVLCNNGHMQLAMT---LEGHGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A LP + +++   +  L  + ED  T +  V+  YP     + K++AF
Sbjct: 240 ARLPLFYMQEALQDNQLQVLFEDFPTTTVDVFVIYPSRKHLSPKVRAF 287


>gi|170695173|ref|ZP_02886321.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140025|gb|EDT08205.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 322

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 140/290 (48%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L L +SS+S  I  LE  +G +L +R  R ++ T+ G+ 
Sbjct: 21  DLFRVFARVVECANFTRAADTLGLPRSSVSAAIQELEGRIGARLLHRTTRKVSPTQDGAA 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   +++SV P G LRI     +G+ ++   L EFL  YP I I 
Sbjct: 81  LYERCLRLIADVEETENLFRQTSVGPGGVLRIDVPGRIGRLIIAPALPEFLASYPRIDIT 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ID+  +  DC +R+ KP   S +I R +  + +   A+P YL     P +  +
Sbjct: 141 LSLTDRTIDLIEERVDCVLRVGKP-HESGMIARPMGDLPLINVASPIYLSQHGRPCTPGD 199

Query: 186 LDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +    ++ +       +  + WL   TV     + R++   VNS  + +  C+ G G+  
Sbjct: 200 MTNQQVVQYASPTSGRIAPWEWLDGETVRTLTTQGRVT---VNSAEAYIACCLAGLGLIQ 256

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V+ +     L+ +M +       +   YP     + +++ F +++
Sbjct: 257 IPAYDVQQHLRAGELIEVMPEYRAAPMPMNLLYPHRQHLSRRVQVFADWL 306


>gi|209549780|ref|YP_002281697.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535536|gb|ACI55471.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 304

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 148/300 (49%), Gaps = 19/300 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E+G++L  R  R L+ T+ 
Sbjct: 2   LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSPTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +S+    +E   + L E+  +P+G +RI+  +  G + LQ  + + L  YP  
Sbjct: 62  GRLYYEESSQALRAIEGANLRLAEARTEPAGTIRISAPVGFGGHFLQDAIFDLLATYPKS 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++  +  D A R    ++ S+LI RKL + H    A+P YL  C  P  
Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLARCGAPDR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
             +L +H+ +  G           WL  ++ P G+  +S       N   ++M   + G 
Sbjct: 181 PADLVRHDCVVAGQ-----STHAQWL--LEGPHGQETVSVSGRFAANEMQAVMAAAIAGY 233

Query: 240 GIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA LP  +    ++D   L R+++   TP   ++  YP +      +K    FI L AR
Sbjct: 234 GIARLPHGVANTCIRDG-RLCRVLDGYTTPVGGLHVVYPSSRHLPPLVK---TFIELAAR 289


>gi|330503614|ref|YP_004380483.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328917900|gb|AEB58731.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 306

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 141/296 (47%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + ++L  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  +S+ P G+LR+       + LL   L  F   YP+IQ+
Sbjct: 64  AYYERVVRLLADVDDAETSLSSASLVPRGRLRVDVPSPFARMLLIPALPAFYARYPEIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +D+  +  DC +R  + I   SLI R +  + +  YA P YL+    P   +
Sbjct: 124 TLGVSDRIVDVIGENVDCVVRGGE-IIDQSLIARHVGDLQLGIYATPSYLQGAGTPTHPR 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H+ + F     G  +P  M   +         G PR+     N+YL+     + 
Sbjct: 183 ELEATGHSTVGFLWSRTGKALPYAMRCGDECIEAH---GRPRLIVDDGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  LP Y+ K    +  LVR+ E+       +Y  +P     + KL+ F +++
Sbjct: 237 GLGMLWLPHYMAKPHLASGELVRLFENWQMTPMPMYLAFPPNRHVSAKLRVFIDWV 292


>gi|206561887|ref|YP_002232650.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198037927|emb|CAR53872.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 307

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 147/290 (50%), Gaps = 11/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE G +
Sbjct: 8   DDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRIAMLEAQLGTRLLHRSTRRMTVTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LR++++   G++++   L +F   YP + ++
Sbjct: 68  VFARAEKILDDVDHLVEDVSTTRTVPRGTLRLSSSFGFGRHVVAPALLDFSARYPQLNVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  +R+   I +  LI R+L T H    A+P YL     P S+ +
Sbjct: 128 LDLFDRLVDVAGEGYDLDVRIGDEI-ADHLIARRLATNHRVLCASPDYLARRGTPRSLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L  H+ +     I +    F  W  TV       ++   L  N     +Q+ + G GI L
Sbjct: 187 LASHDCLA----IKERDHPFGVWRLTVRGETATVKVGGALSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +      +   L R++ D + P+  ++  YPE +  + K++   +F+
Sbjct: 243 RSIWEAGPLIERGALCRVLPDALQPA-NIWAVYPERVAASAKVRVCVDFL 291


>gi|126727891|ref|ZP_01743719.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126702832|gb|EBA01937.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 296

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 12/293 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW+K R F V A  GS + AA  L ++Q ++ RQ+ GLE E+GI LF R  RGL LT
Sbjct: 6   VKFDWNKARAFLVTAEEGSLSAAARALGMAQPTLGRQVDGLEQELGIVLFERVGRGLRLT 65

Query: 61  EQGSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             G +L    R   E   ++  T +  Q  +++  GK+ I+ +      LL   + +  L
Sbjct: 66  PSGLELLDHVRDMGEAAGRVSLTALG-QSQAIE--GKICISASETYAAVLLPPIIAKLRL 122

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P I++++++ N   D+    AD AIR  +P +   L+ +KL       YA P Y++  
Sbjct: 123 QEPGIKVEIVVANHASDLRRREADIAIRNFRPTE-PDLVAKKLGDAEAVLYATPEYIEKI 181

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P    +L + +   F DL    M     L T+   + +     L  N YL + +    
Sbjct: 182 GNPTKPSDLQRAD---FVDLDAGGMM-IKGLNTLGLGVTKANFPILTEN-YLVMWELVRQ 236

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+G+ +L  YI   +P +VRI+ D+    F ++      L  + +++   +F+
Sbjct: 237 GAGVGILDAYIGDADPTVVRILPDLPPLVFPIWLVAHRELTTSRRIRMVYDFL 289


>gi|225626606|ref|ZP_03784645.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|256158753|ref|ZP_05456623.1| transcriptional regulatory protein [Brucella ceti M490/95/1]
 gi|256254145|ref|ZP_05459681.1| transcriptional regulatory protein [Brucella ceti B1/94]
 gi|260169643|ref|ZP_05756454.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99]
 gi|261221290|ref|ZP_05935571.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261759175|ref|ZP_06002884.1| bacterial regulatory protein LysR [Brucella sp. F5/99]
 gi|265997251|ref|ZP_06109808.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|225618263|gb|EEH15306.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|260919874|gb|EEX86527.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261739159|gb|EEY27155.1| bacterial regulatory protein LysR [Brucella sp. F5/99]
 gi|262551719|gb|EEZ07709.1| transcriptional regulator [Brucella ceti M490/95/1]
          Length = 297

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G +L 
Sbjct: 9   LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI I+L 
Sbjct: 69  AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   Q+L 
Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+ I     +P   E F W  T  R   + RI+    L   S   ++Q C+ G G+A L
Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P DY  +  ++  LV ++ D        +  YP   ++   L A 
Sbjct: 245 PRDYAARHIESGALVEVLADWCKTFAGYHLYYPNRRQHPPALAAL 289


>gi|158423675|ref|YP_001524967.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158330564|dbj|BAF88049.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 315

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 138/287 (48%), Gaps = 10/287 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V  +GSF+ AAE+L  S    S+ +S LETE+G++L  R  R L+ TE G   + 
Sbjct: 20  RMFVAVLDTGSFSAAAERLGTSSGQASKLVSRLETELGVQLLKRTTRALSPTEVGQAYYE 79

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  + E     ++ +S  P+G+LR++  +  G   L   L +F   +P IQ+ +  
Sbjct: 80  RIKPLLDEFEALDASVRNASGAPAGRLRLSAPMSFGHIQLMPLLLDFARAFPQIQLNVSF 139

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++  +  D AIR+  P + SSLI RKL    +   A+P YL +   P + Q+L +
Sbjct: 140 SDRLVNVVDEGFDAAIRIGSP-RDSSLIARKLCDSQIMWLASPAYLASHGTPQTPQDLVR 198

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGIALLPD 246
           H  I   D  P   E   W       +G+       ++ +S  + +     G GIA +P 
Sbjct: 199 HACI-IDDNFP---EPLVWRFQTPDGVGDAVTVSGRMRFSSGEACLAAAEAGLGIARMPT 254

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +I         +V +  D++ P+  VY  YP       K++A  +F+
Sbjct: 255 FIAGPKLKAGTVVPLFRDLMPPARGVYALYPPGRHLAVKVRALVDFL 301


>gi|207742660|ref|YP_002259052.1| transcriptional regulator protein [Ralstonia solanacearum IPO1609]
 gi|206594054|emb|CAQ60981.1| transcriptional regulator protein [Ralstonia solanacearum IPO1609]
          Length = 294

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 137/295 (46%), Gaps = 19/295 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  VAR+ +   AA++L + Q+++ R+I+ LE E+  KLF R +  L LT  
Sbjct: 1   MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLALTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      + H   T +  +  +  + +G +R+ATT  L    +   + +  L +P I
Sbjct: 61  GEALIGPAEAMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +      +++   AD A+R  +P  +  LI R++ TI    YA+  YL+   EP+ 
Sbjct: 121 DIVCLASKSIANLTKREADVAVRTLRP-TAPDLIARRVATIETGLYASRGYLRARGEPVE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+    L P+    + W A    P+   R+  LQ +S ++I +  + G GI+
Sbjct: 180 GSAFAGHDLV----LYPRNEVPWMWEALCGEPVAPSRV-VLQSSSAMTIFEAVIAGIGIS 234

Query: 243 LLPDYIVKDNPNLVRI------MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L       +  LVR+      M+D       V+      L  T +++A  N I 
Sbjct: 235 ELVCCRADPHSELVRVLPHRRRMQD-------VWLVTHADLHKTARVRALMNCIV 282


>gi|90420616|ref|ZP_01228523.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335344|gb|EAS49097.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 295

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 138/300 (46%), Gaps = 31/300 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    AA +L L+ +++ R+++ LET +G +L  R   G  LT  
Sbjct: 1   MNWDDVRLFLAVARAGQILAAARRLELNHATVGRRLTALETALGARLLDRRPNGCELTPT 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +   +   + ++  + +  SG +R+ T    G   L   L      +PD+
Sbjct: 61  GRDFLEQAERMEAAMLAARADIGATELALSGTVRVGTPDGFGTAFLAPRLWRLTERHPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL+   +   IS   AD AI + +P ++  L+  KL    +  YA+  Y+     P S
Sbjct: 121 TVQLVPVPRAFSISRREADIAITVARP-EAGRLVAGKLTDYALGLYASRGYIAAHGAPAS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----------LQVNSYLSI 231
           + EL +H L+         +ED  +          PR++             +V+S +  
Sbjct: 180 LAELGRHRLV-------GAVEDLLY---------SPRLAYHTDIVARWPAHYEVSSAIGQ 223

Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +    G+GI +L  ++  D P L RI+ E+ I  S+  +  Y E++++  ++ A  +FI
Sbjct: 224 TEAVAAGAGIGILHGFMAADRPQLTRILPEETIHRSY--WLVYHESVRDIRRIAAVADFI 281


>gi|262173801|ref|ZP_06041478.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
 gi|261891159|gb|EEY37146.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
          Length = 304

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 148/286 (51%), Gaps = 11/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V   GSF+ AA++L +++S++S+++S LE ++GI+L  R  R L+LTE G + +  
Sbjct: 10  VFVAVVECGSFSLAAKKLKITKSAVSKRLSQLEDDLGIRLINRTTRKLSLTEAGERYYYH 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S+     +     + E   +P GKL+I   +  G   +   + +F+ +YP ++I L L+
Sbjct: 70  VSQALSYAQQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYPKVEIDLQLE 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D AIR+   + +S+L+ ++LVT      A+P YL    EP    +L +H
Sbjct: 130 DQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCQSVLCASPEYLTRHGEPEKPADLLEH 188

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + +          FN      + I  P+   L VN+  +I +  + G GIA LP ++V
Sbjct: 189 NCLVYSYFRGGSEWTFNHQQQEVKVI--PK-GNLTVNNSEAIRRALLAGLGIAQLPTFLV 245

Query: 250 KDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + +LVR     +M     P   VY  +PE      K++AF +F+
Sbjct: 246 --SKDLVRGTLKSVMTQYSLPVHAVYAVFPERKHLPYKVRAFIDFL 289


>gi|258622673|ref|ZP_05717693.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258626675|ref|ZP_05721500.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581026|gb|EEW05950.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258585050|gb|EEW09779.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 304

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 145/284 (51%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V   GSF+ AA++L +++S++S+++S LE ++GI+L  R  R L+LTE G + +  
Sbjct: 10  VFVAVVECGSFSLAAKKLKITKSAVSKRLSQLEDDLGIRLINRTTRKLSLTEAGERYYYH 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S+     +     + E   +P GKL+I   +  G   +   + +F+ +YP ++I L L+
Sbjct: 70  VSQALSYAQQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYPKVEIDLQLE 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D AIR+   + +S+L+ ++LVT      A+P YL    EP    +L +H
Sbjct: 130 DQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCQSVLCASPEYLTRHGEPEKPADLLEH 188

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + +          FN      + I  P+   L VN+  +I +  + G GIA LP ++V
Sbjct: 189 NCLVYSYFRGGSEWTFNHQQQEVKVI--PK-GNLTVNNSEAIRRALLAGLGIAQLPTFLV 245

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +     L  +M     P   VY  +PE      K++AF +F+
Sbjct: 246 SKDLARGTLKSVMTQYSLPVHAVYAVFPERKHLPYKVRAFIDFL 289


>gi|237800167|ref|ZP_04588628.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023024|gb|EGI03081.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 298

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 137/289 (47%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA +L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPQLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S ++  ++    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRIAPRKMYVCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELGRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGIGLCQL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V+    +  LV +++    P+  V+  YP+    + K++   +++
Sbjct: 238 PDYYVQRHLKDGTLVSLLDTHQPPNTAVWALYPQQRHLSPKVRKLVDYL 286


>gi|332341536|gb|AEE54870.1| transcriptional regulator YafC [Escherichia coli UMNK88]
          Length = 304

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 143/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-STLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +          W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE----AASLNTWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|162453701|ref|YP_001616068.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161164283|emb|CAN95588.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
          Length = 312

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 6/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++  F  VA  GSFT AAEQL + +S++SR ++ LE  + ++L  R  R + LTE G +
Sbjct: 19  DEIAAFARVAELGSFTAAAEQLGVPKSTVSRAVTRLEDGLQVRLLQRSPRAVALTEAGRR 78

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +     L      L     +P G +R++   D G++ L   L EF   YP + ++
Sbjct: 79  FFGDVAPHIAGLRDAAQALDAYQGQPQGTIRLSAPPDGGESFLGEMLVEFGARYPLLSLE 138

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +  + +D+  +  D A+R  + +  SSL+ RKL+  ++  +AAP YL     P + +E
Sbjct: 139 VDMSTRRVDLLREGFDVALRATRELPDSSLVVRKLLDSYVQLFAAPAYLARRGLPRAFEE 198

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + F     +  +  +    V   +   RI+    + +  I      G GI  LP
Sbjct: 199 LADHERVVFLPDARRGQQPVDGPRAVRDAMATGRIAT---DDFQLIRSLLRAGGGIGPLP 255

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +      +  LV ++ +    + T+Y  YP A      +  FR+F+ 
Sbjct: 256 RVLAAPELASGRLVHVLPEWSQRAGTLYLVYPSARHVPRNVAVFRDFVL 304


>gi|160900571|ref|YP_001566153.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366155|gb|ABX37768.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 304

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 12/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G+FT AA+ L L + ++++QI  LE  V +KL  R  R +T+T  G+  +
Sbjct: 7   MRVFVRVVEAGNFTRAADSLDLPKGTVTKQIQALEARVRVKLLNRTTRRVTVTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + + +  +  +  +  +   PSG+LR+     + + ++   L EF   YPDIQI L 
Sbjct: 67  ERAARLLNDFDDLEASMVNTQTAPSGRLRLDVGSSMARLIIIPALTEFCERYPDIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR  + +   SL+ R++ +++    A+P YL     P    ELD
Sbjct: 127 VGDRLVDLISDNVDCVIRGGE-LSDQSLVARRIGSMNWVTVASPAYLARHGVPQHPSELD 185

Query: 188 -KHNLITFGDLIPKCMEDFNWLATVDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            KH ++ F     + M    +    D  I   G  RI+    N+Y + +   + G GIA 
Sbjct: 186 TKHQIVAFFSGHTRRMYPLEFQRG-DESIEVAGNYRIAANDSNAYTAAV---LAGFGIAQ 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L     +   D+  LV ++ +   P   ++  YP     + K++AF
Sbjct: 242 LVTAFAQPLIDSGELVEVLPEWTQPPLPIHVVYPPNRHLSAKVRAF 287


>gi|116050880|ref|YP_790297.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586101|gb|ABJ12116.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 297

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 151/296 (51%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA +GSFT AA+ L + ++++S  +  LE ++G +L +R  R + LT  GS 
Sbjct: 5   DSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTHDGSV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +   +E  +   ++ S + SG+L++     + + L+   L EF   +PDI+++
Sbjct: 65  VLERCRHLLEDMEELESLFRDGS-RASGRLKVDVPSRVARLLIAPALPEFFRQHPDIELE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC +R+ + + +SSL+ R+L  + +   A+P YL+   EP +  +
Sbjct: 124 LGSSDRSVDLVQEGVDCVLRVGQ-LGNSSLVARRLGEMQLINCASPAYLEEHGEPRTPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           LD+H  + +    P       W    D R +     S + VN+  S +  C+ G G+  +
Sbjct: 183 LDRHWAVNYAS--PSSGRVLPWEYREDGRTLTRALRSRVTVNNAESYIACCLSGLGLIQI 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           P Y V+++     L  ++      +   Y  YP     + +++AF +++   L+AR
Sbjct: 241 PAYDVREHLQRGELCEVLPHWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLLRAR 296


>gi|127511402|ref|YP_001092599.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126636697|gb|ABO22340.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 314

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 141/280 (50%), Gaps = 23/280 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F+ +  +GS   AA+ L++ +S++SR++  LE E+ +KLF+R +R +TLT  GS 
Sbjct: 4   EDIALFHRIVETGSLVEAADILNVPKSTLSRRLQTLEDELNVKLFHRQSRAMTLTASGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  T+ +   LE T  EL       +G LRI          +   + EF+ L P + ++
Sbjct: 64  FYNKTTPLLATLEQTFSELSGKEAAVTGHLRILIFPIPELLYITQAIFEFMDLNPALTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+ ++  D+  +  D A  L      + ++ R +++  +H +A+P YL+   +P   +E
Sbjct: 124 IIVSSEPKDMIRNNIDLAFMLEDAFNENEMVARHIISEFVHFFASPEYLERAGKPTKPEE 183

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
           L +HN I F    G +       FN +     P G+ RI      L VNS  + ++  ++
Sbjct: 184 LPEHNSILFRYPNGRI-------FNEV-----PFGKDRILSVTGNLCVNSLSTCLEAALM 231

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           G GIA++P  I +   +N  LV + ED+       +  YP
Sbjct: 232 GRGIAMMPLPIAREYVENGKLVMLFEDIEPYEGKCFLVYP 271


>gi|89092571|ref|ZP_01165524.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
 gi|89083083|gb|EAR62302.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
          Length = 294

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 138/277 (49%), Gaps = 18/277 (6%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR   +F  +A  GSFT  AE+L LS+S +S++IS LE EVG +L +R  R L LT  
Sbjct: 2   DKLRAMSLFIRLAERGSFTEVAEELGLSKSMVSKEISRLEAEVGARLIHRSTRSLQLTTI 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R   ++  +++  +  +Q +   P GKL+I   + LG + L     +F+  YP+I
Sbjct: 62  GEGYLRHCHDILERIDDAESFVQGAQDLPRGKLKINAPMALGISHLSQVFSDFMREYPEI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + LD+  +D+  +  D   R       S  + + L+       A+  YLK      +
Sbjct: 122 ELDIHLDDAPVDLIENGFDLGFRAASRPFDSGYVGKPLMDFSYSVCASAEYLKEQGPITT 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISC-LQVNSYLSIMQYCVLGSG 240
           ++EL +HN   +     + +    W      P+GE  ++   L+VNS   ++     G G
Sbjct: 182 VEELSEHNCFIYSYFRGQDI----W------PLGEGVKVGGNLRVNSTPFMLDVVKNGLG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           I  +PD+I  ++     +V ++++V  P  T+Y  YP
Sbjct: 232 IGFIPDFIAGNSIREGQVVELLKNVARPRLTLYAMYP 268


>gi|28898958|ref|NP_798563.1| transcription regulator LysR [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838692|ref|ZP_01991359.1| AphB/LysR family [Vibrio parahaemolyticus AQ3810]
 gi|260365294|ref|ZP_05777851.1| AphB/LysR family [Vibrio parahaemolyticus K5030]
 gi|260878844|ref|ZP_05891199.1| AphB/LysR family [Vibrio parahaemolyticus AN-5034]
 gi|260896234|ref|ZP_05904730.1| AphB/LysR family [Vibrio parahaemolyticus Peru-466]
 gi|260899997|ref|ZP_05908392.1| AphB/LysR family [Vibrio parahaemolyticus AQ4037]
 gi|28807177|dbj|BAC60447.1| AphB/LysR family [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747912|gb|EDM58784.1| AphB/LysR family [Vibrio parahaemolyticus AQ3810]
 gi|308088840|gb|EFO38535.1| AphB/LysR family [Vibrio parahaemolyticus Peru-466]
 gi|308094250|gb|EFO43945.1| AphB/LysR family [Vibrio parahaemolyticus AN-5034]
 gi|308107435|gb|EFO44975.1| AphB/LysR family [Vibrio parahaemolyticus AQ4037]
 gi|308115403|gb|EFO52943.1| AphB/LysR family [Vibrio parahaemolyticus K5030]
 gi|328474502|gb|EGF45307.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio parahaemolyticus 10329]
          Length = 291

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S +  +L +T  E+ +     SGK++I+   +L + ++     +F+  YPDI I+
Sbjct: 64  FYHECSPLLQRLTSTAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNDFMKKYPDINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N    +     D   R+  P + SSLI RK+  +     A+  YL     P   +E
Sbjct: 124 LTTENNADQLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILVASQDYLAANPAPNHAEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+L+    LI   + +    + V+   G       Q N+   +   C  G GI L+P
Sbjct: 183 LSNHSLLKGYPLIKWTLINSKGESVVNVERGR-----FQANALNVVRSACSEGLGITLMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++K   ++  L+R++ D       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMIKEYIESGELLRVLPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|295680770|ref|YP_003609344.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440665|gb|ADG19833.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 325

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 137/296 (46%), Gaps = 10/296 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD   +  + V   VA SGSF  AAE L +S S +SR IS LE ++G++L  R  R  
Sbjct: 1   MTFDGRLFAGITVLAAVAESGSFVRAAEALGVSPSGVSRAISRLEKQIGVRLLDRTTRSQ 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G +L+   S     +E        S+    GKLR+       + +L   L   L 
Sbjct: 61  TLTDEGRRLYETVSPHLVGIECAASTASGSAGVVQGKLRVNVDPFFSRTVLASKLPALLQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P++ ++LI+ +   D+  D  D AIR   P    +L+ RKL+   +   A+P YL++ 
Sbjct: 121 QFPELSVELIMRDDVGDLVADGFDLAIRFGPP-PVGTLVARKLLEARIITVASPAYLESN 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             P    ++  H  I F +  P     F W        +G P    L V+   +++  CV
Sbjct: 180 GRPNCPDDVVDHERILFYN--PLSGRPFEWEFHRGKEVVGIPVYGRLLVSDVGTMLNACV 237

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G+GIA +     +      +LV +  D     F +Y  YP       K++AF +F
Sbjct: 238 AGAGIAQVMSIGTETLIAQQDLVDLFPDWPDERFPLYALYPSRRHLAAKVQAFISF 293


>gi|307725778|ref|YP_003908991.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586303|gb|ADN59700.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 296

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 144/289 (49%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F     + +FT AA ++ LS+  +SR++  LE  +G+ L  R+ R L +TE G +
Sbjct: 4   DDMRIFVATVDAHNFTAAARRMSLSKQFVSRRVMALEEALGVPLLVRNTRKLAVTELGQE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++E  +  +      P G LR++  +  G   L   + +FL  + D++  
Sbjct: 64  FYERARRILSEVEEAEQAMSLRRAGPRGLLRVSAPMSFGMTHLSPLVADFLREHRDVRFD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D A+R+   +  S+LI +KLV ++  A  +P YL+   +P +  +
Sbjct: 124 MELSDRTVDVVGEGFDMAVRI-GVLPDSTLIAQKLVDVNFVACCSPGYLRRRGKPATPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ + +G           W   V+  +    +   L+ N+   I    V G GI  L
Sbjct: 183 LAGHSCLLYGH-----GGVVTWEFAVNGAMKSFEVHGPLRANNGDLIRDAAVAGLGIVRL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +IV +   +  LV +++D +  S  VY  YP+  +++  ++AF +F+
Sbjct: 238 PHFIVANALRDGQLVTVLDDFMPGSIGVYAVYPQHRQSSLTIRAFVDFL 286


>gi|220916849|ref|YP_002492153.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954703|gb|ACL65087.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 335

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 139/298 (46%), Gaps = 24/298 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+   V  +G  T AA +L L +S++SR+++ LE  +G++L  R+AR L LTE G  
Sbjct: 9   DDLRLLVEVVATGGLTAAAARLGLRKSTVSRRLAALEERLGVRLLERNARRLRLTEAGRA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   + +  +      E  E+   P G LRIAT   LG+ LL   + E LL +P + ++
Sbjct: 69  YHARAARLVAEARALDRETAEARGAPQGTLRIATPALLGE-LLAPAVAELLLRHPRLGVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-- 183
           L L    +D+  +  D A+R   P+  SSL+ R+L T+    YA+P YL     P +   
Sbjct: 128 LALAPPHVDLLAEEHDLALRT-GPLADSSLVARRLGTLRTGCYASPAYLARRGTPATPDA 186

Query: 184 --QELDKHNLITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYC 235
              E + H+ I    L+ +   D  W       A   RP G      L+V S  +     
Sbjct: 187 LRDEAEAHDCI----LLAEAGTDEIWFFGAGATARTVRPAGR-----LRVPSVHAGQLAA 237

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G G+  LP  +V D+     LV ++E    P   V+  YP       K++AF   +
Sbjct: 238 RAGLGVVRLPAALVADDVRSGRLVAVLEAETPPGMPVHAVYPSGRHLAPKVRAFLELV 295


>gi|149908293|ref|ZP_01896957.1| putative transcriptional regulator [Moritella sp. PE36]
 gi|149808835|gb|EDM68768.1| putative transcriptional regulator [Moritella sp. PE36]
          Length = 308

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 17/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  +A  GSF   A Q   S S+IS+ I+ LE ++G++L +R  R L LTE G    
Sbjct: 7   LQLFVSLAEQGSFVAVANQSGQSPSTISKAITRLEKDLGVRLLHRTTRQLQLTEAGESYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   EV   L+ T+ +L ++   P+G L+I   +  GQ  +   L EF   YPDI+++L 
Sbjct: 67  QTAREVLSLLQNTESKLTQNISTPTGTLKINLPMSFGQLYVVPLLPEFCQQYPDIKLELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   DI     D AIR  K +  S LI R++  + M  +A+P +L     P +  E +
Sbjct: 127 FSDDYTDIVESGIDIAIRSGK-LNDSRLIARRICPMDMGIFASPDHLAKFGTPTTPAEFE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGI 241
           +HN I +        +    + T+  P  E +I  L   SY+      ++ Q   LG+G+
Sbjct: 186 QHNWIKYR------FKQSGRILTIMLPQAE-QIVELDPKSYVLVDDGNALAQLTSLGTGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A +P ++V+D      L  I      P   VY  Y        K++ F  +I  K
Sbjct: 239 AFMPHFLVRDLVQEGKLTLISSPWRNPEQAVYLYYLSRDYLPAKVRLFIEYIVQK 293


>gi|304391206|ref|ZP_07373150.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
 gi|303296562|gb|EFL90918.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
          Length = 296

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 131/283 (46%), Gaps = 25/283 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D L  F  V R GSF  AA + ++  SS+SRQI+ LE E+G +LF R  R L+ TE G
Sbjct: 2   DIDVLHTFIDVFRHGSFASAARERNVDPSSVSRQIAVLEDELGYRLFERTTRRLSATEAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H   +    +L   +    +    P G+LR+  ++  G+  L   +  F  +YP+++
Sbjct: 62  RVYHDRIAGFIDELTLAREAGADVLGAPKGQLRVTASVAFGERWLIPRIATFQTIYPEVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + LIL +  +DI+ +  D  IRL   + S SL+  +L+       AAP Y+    +P+S 
Sbjct: 122 LDLILSDAVVDIAAEGIDLGIRLGTRM-SGSLVATRLLQTRYRVVAAPDYIAQHGQPVSP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------ 237
             L  HN + F   +P     + + +      G   I+ ++V   LSI     L      
Sbjct: 181 VNLGDHNCLVF--RLPGYRSHWRFRS------GAGDITEVEVRGTLSISNALALRRATLD 232

Query: 238 GSGIALLPDYIVKDN----------PNLVRIMEDVITPSFTVY 270
           G GIALL D+ V  +          P  V    D  T ++ VY
Sbjct: 233 GFGIALLADWTVDADIEAGALIDLFPAFVTSAADFDTAAWIVY 275


>gi|197122081|ref|YP_002134032.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171930|gb|ACG72903.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 335

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 139/298 (46%), Gaps = 24/298 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+   V  +G  T AA +L L +S++SR+++ LE  +G++L  R+AR L LTE G  
Sbjct: 9   DDLRLLVEVVATGGLTAAAARLGLRKSTVSRRLAALEERLGVRLLERNARRLRLTEAGRA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   + +  +      E  E+   P G LRIAT   LG+ LL   + E LL +P + ++
Sbjct: 69  YHARAARLVAEARALDRETAEARGAPQGTLRIATPALLGE-LLAPAVAELLLRHPRLGVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-- 183
           L L    +D+  +  D A+R   P+  SSL+ R+L T+    YA+P YL     P +   
Sbjct: 128 LALAPPHVDLLAEEHDLALRT-GPLADSSLVARRLGTLRTGCYASPAYLARRGTPATPDA 186

Query: 184 --QELDKHNLITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYC 235
              E + H+ I    L+ +   D  W       A   RP G      L+V S  +     
Sbjct: 187 LRDEAEAHDCI----LLAEAGTDEIWFFGAGATARTVRPAGR-----LRVPSVHAGQLAA 237

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G G+  LP  +V D+     LV ++E    P   V+  YP       K++AF   +
Sbjct: 238 RAGLGVVRLPAALVADDVRSGRLVAVLEAETPPGMPVHAVYPSGRHLAPKVRAFLELV 295


>gi|77361788|ref|YP_341363.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76876699|emb|CAI87921.1| putative transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 298

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 138/291 (47%), Gaps = 13/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++V + VAR G+ T AAE L++  S++ R+I+ LE  +  +LF+RHARG   TE G
Sbjct: 7   DWQDVKVAFEVARLGTLTAAAEALNVHHSTVLRRINNLEKNLNTRLFHRHARGYKATETG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL      +   LE    ++  +     G L + TT+    ++L    ++F  L+P +Q
Sbjct: 67  AKLFSTAQVIDSSLEQLHNDIAAADSTLRGSL-LLTTVSGFMDVLGDVCEQFQALHPQVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++IL+ K + +    A  A+R          I + L  ++   YA   Y+     P S+
Sbjct: 126 LEMILEQKRLRLDHGQAHIAVRAGPRPDEGDYIAQHLAQLNSGLYANQRYINKYGMPKSL 185

Query: 184 QELDKHNLIT----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L +HN I+    F   +P     F W   VD+ I  P+I  L+V+      +  + G 
Sbjct: 186 SDLQQHNFISGVAGFNARVPY----FEW---VDQHIAAPQIK-LRVSETSEATRAVIKGL 237

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  L   +     NLV I+ + +     ++      +  T K++AF   +
Sbjct: 238 GIGGLQHNVAAQYANLVPILSNELIWCTDIWLVTHHLVHRTAKVQAFSQLL 288


>gi|254472082|ref|ZP_05085483.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211959284|gb|EEA94483.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 296

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 140/290 (48%), Gaps = 11/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  VARSG    AA++L L+ ++++R++S LE  +  KL  R   G  LT +
Sbjct: 1   MNWDDARVFLAVARSGQILGAAQRLGLNHATVARRLSALEAALQAKLIDRRTTGCALTSE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + E+  + V+ SG +RI      G   L   L      YPD+
Sbjct: 61  GERFFEFAESMETEMLSARAEIGGTDVELSGAVRIGAPDGFGVAFLAPRLGALNERYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL+  ++   +S   AD A+ + +P +   L+ RKL    +  YA+  Y      P +
Sbjct: 121 TLQLVPLHRAFSLSKREADLAVTVGQP-EHGRLVSRKLTDYSLGLYASRTYADRYGLPQT 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +EL +H LI +  DLI       N+ A   +   + R+ C    S L   +    GSGI
Sbjct: 180 EEELKQHRLIGYVDDLI--FASSLNYSAEFSKEW-QSRLEC---ASALGQTEAVRAGSGI 233

Query: 242 ALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +L  +I   N + V ++ E  I+ S+  Y    E+ ++  ++KA  +FI
Sbjct: 234 GILHGFIADGNDDFVPVLPERRISRSY--YLVTHESARHLRRIKAVSDFI 281


>gi|117619725|ref|YP_854742.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561132|gb|ABK38080.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 301

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 144/299 (48%), Gaps = 15/299 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W+ +  F  VA  G FT AA +L +S + +SRQ++ LE  +  KL  R  R + LTE 
Sbjct: 2   FGWEGICEFVSVAEQGGFTPAARKLGVSVAQVSRQVAQLEDRLQAKLLLRTTRQVRLTEL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R   ++   L   ++ +      P G LRI   +  G++ +   + +F++ +P +
Sbjct: 62  GEIYYRHCRQLLDNLYEAELAVGRHQAVPQGTLRITAPVSYGESRIAPLVNDFMVRFPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L N+ +D+  +  D A+RL   ++ SSL+ RKL     +  A+P Y      P S
Sbjct: 122 EVTLNLTNQLLDLVHEGYDLALRLGH-LKDSSLVARKLAQRVPYVCASPAYTARHGMPNS 180

Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + EL +H  L+   D          W  T+D RP        L  NS  +++   + G G
Sbjct: 181 LSELTRHTCLVGNSD---------EWHFTLDGRPHSVRVHGLLHCNSGHALLDAALKGIG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  LPDY V D+     L+ ++ ++  P+  ++  YP     + K++   +++  +  D
Sbjct: 232 IIQLPDYYVSDHLAQGELIELLPELRAPAEGIWALYPHNRHLSPKVRLLVDYLAERLSD 290


>gi|154247175|ref|YP_001418133.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161260|gb|ABS68476.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 301

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 22/271 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LRVF  VAR G    AA +L L+ ++++R++  LE  +G  LF R   G   TE 
Sbjct: 1   MDWDHLRVFLAVARQGQLLAAARRLGLNHATVARRLDALEEALGAPLFDRRPAGCVPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      V  ++       ++++   SG +RI     LG   L   L     LYPD+
Sbjct: 61  GERLLPAAERVEAEMLGIAEGFRDAAADVSGTVRIGAPDGLGNYFLAAELGALTALYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+   +   +S   AD AI L +P++   L+ R L+   +  YAA  YL     P S
Sbjct: 121 VVELVPLPRTFSLSRREADLAIVLDRPMEGRLLVSR-LIDYTLSVYAARAYLDRHGTPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYCVL 237
           +++L  H ++T        +ED  + + +D        G  R  C  V   +  M+    
Sbjct: 180 VEDLAGHVVVT-------GVEDLAYASALDYSGVLEKHGRSRFRCASV---MGQMEAVRA 229

Query: 238 GSGIALLPDYIV-----KDNPN-LVRIMEDV 262
           G+GI +L D+          P+ LVRI+  +
Sbjct: 230 GAGIGVLHDFAAGRHLEAQGPDALVRILPGI 260


>gi|85703828|ref|ZP_01034931.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
 gi|85671148|gb|EAQ26006.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
          Length = 301

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L  FL  +PDI + +
Sbjct: 66  YDRALRVLNDAGEADALVSSMQSDPSGLLRISVATDFGVNHLSPVLGTFLDEFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P+Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPNYFEKYGRPQKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ +       +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NEHKLLHYSSQAGGAV----WKLTA--PSGEKRQVRTAGGLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++      +  +   M D+      +Y  YP       K++AF +F+
Sbjct: 239 YLPSFLYSRAMADGLIEDAMPDLPLELQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|241205197|ref|YP_002976293.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859087|gb|ACS56754.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 307

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 145/291 (49%), Gaps = 16/291 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E+G++L  R  R L LT  
Sbjct: 2   LDLNDIMIFARVVEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLNLTAS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +S+    +E     L E+  +P+G +RI+  +  G + LQ  + EFL   P  
Sbjct: 62  GRLYYEESSQALRTIEGANQRLAEARAEPAGTIRISAPVGFGGHFLQDAIFEFLSTCPKA 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++     D A R    ++ S+L+ RKL ++H    A+P YL     P +
Sbjct: 122 RVELRLTDDRLNLVESGIDLAFRT-GILEDSTLVARKLGSLHRLLCASPDYLARRGPPAA 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
            ++L +H+ +  G           WL  ++ P G+  ++       N   ++M   + G 
Sbjct: 181 PEDLVRHDCVIAGQ-----AAHAQWL--LEGPHGQETVAVSGRFAANEMQAVMAAAIAGH 233

Query: 240 GIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GIA LP    +  +KD   L R+++   TP+  ++  YP +      +KAF
Sbjct: 234 GIAQLPHRFAEACIKDG-RLRRVLDGYTTPAGGLHVVYPSSRHLPPLVKAF 283


>gi|218547658|ref|YP_002381449.1| DNA-binding transcriptional regulator [Escherichia fergusonii ATCC
           35469]
 gi|218355199|emb|CAQ87806.1| putative DNA-binding transcriptional regulator [Escherichia
           fergusonii ATCC 35469]
          Length = 304

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 144/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYIARYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W  T  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPITCSDGQLHEVKY-VLSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|222110153|ref|YP_002552417.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221729597|gb|ACM32417.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 304

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 139/285 (48%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V  +G+FT AA+ L L + ++++ +  LE  + +KL  R  R +T+T  G+  +
Sbjct: 7   MRIFARVVEAGTFTRAADSLQLPKGTVTKHVQALEERLRVKLLNRTTRRVTVTADGAAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +    +  +  + ++   P G+LR+     + + L+  NL +F   YPDIQI L 
Sbjct: 67  DRTVRLLADFDDIEASMSQARANPRGRLRVDVGSSVARLLIVPNLAQFQERYPDIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR  + +   SL+ R++  +     AAP YL+    P    +L+
Sbjct: 127 VSDRTVDLIGDNVDCVIRGGE-LADQSLVARRIGNLEFITVAAPAYLERFGVPAHPLDLE 185

Query: 188 K--HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +    +I F  +  +    +F+    V    G   ++  + N+YL+ +   V G G+  +
Sbjct: 186 RSHRTVIYFSPVSARRYPLEFHKDGEVIETSGPSHLAVNESNAYLNAL---VAGQGVGQI 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +  +   +   LVR++ D   P   VY  YP     + K++AF
Sbjct: 243 TTFQAQQHFERGELVRVLPDWSHPVLPVYVVYPPNRHLSAKVRAF 287


>gi|83746735|ref|ZP_00943784.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83726688|gb|EAP73817.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 319

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 137/295 (46%), Gaps = 19/295 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  VAR+ +   AA++L + Q+++ R+I+ LE E+  KLF R +  L LT  
Sbjct: 26  MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLALTPA 85

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      + H   T +  +  +  + +G +R+ATT  L    +   + +  L +P I
Sbjct: 86  GEALIGPAEAMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPGI 145

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +      +++   AD A+R  +P  +  LI R++ TI    YA+  YL+   EP+ 
Sbjct: 146 DIVCLASKSIANLTKREADVAVRTLRPT-APDLIARRVATIETGLYASRGYLRARGEPVE 204

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+    L P+    + W A    P+   R+  LQ +S ++I +  + G GI+
Sbjct: 205 GSAFAGHDLV----LYPRNEVPWMWEALCGEPVAPSRV-VLQSSSAMTIFEAVIAGIGIS 259

Query: 243 LLPDYIVKDNPNLVRI------MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L       +  LVR+      M+D       V+      L  T +++A  N I 
Sbjct: 260 ELVCCRADPHSELVRVLPHRRRMQD-------VWLVTHADLHKTARVRALMNCIV 307


>gi|89073223|ref|ZP_01159753.1| putative transcriptional regulator [Photobacterium sp. SKA34]
 gi|89050933|gb|EAR56397.1| putative transcriptional regulator [Photobacterium sp. SKA34]
          Length = 294

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 139/287 (48%), Gaps = 9/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T A+ +  +  ++++R+I  LE  + I+L  RHAR L+LTE G K
Sbjct: 4   DDLNLFRMVVENGSYTAASRKTQVPVATLTRRIQALEEGLNIRLLNRHARKLSLTEAGQK 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +  +L  T   + E     +GKLRIA   ++ + +LQ  L  F+L +P I IQ
Sbjct: 64  FYHDCAPLLQQLLDTTEHISEECKGAAGKLRIAAPTNITKVMLQPLLNAFMLEHPAISIQ 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + N+   +     D   R+  P + S+LI R++  +     A+P YLK   EP   Q+
Sbjct: 124 LYMSNEPDQLDPTDWDVMFRI-GPQRDSTLIARRINEVKDILVASPEYLKKNPEPKHAQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+    L+   + + N         G    S L V     + + C  G GI L+P
Sbjct: 183 LHDHVLLKGNPLLRWRLNNHNGETVTINERGRFEASELNV-----VRKACCAGLGITLMP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           D +++    +  + +++++       VY  Y        KL+ F +F
Sbjct: 238 DVMLEKYIADGEVTQVLKNWSANPRDVYLIYNHRDYQPEKLRLFIDF 284


>gi|54309806|ref|YP_130826.1| putative transcriptional regulator [Photobacterium profundum SS9]
 gi|46914244|emb|CAG21024.1| putative transcriptional regulator [Photobacterium profundum SS9]
          Length = 292

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T A+ +  +  ++++R+I  LE  + ++L  RHAR L+LTE G K
Sbjct: 4   DDLNLFRMVVENGSYTGASRKTQVPVATLTRRIQALEECLNLRLLNRHARKLSLTEAGQK 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +  +L  T   + E     +GKL+IA   +L + LLQ  L  F+L +P I I+
Sbjct: 64  FYDDCAPLLQQLVDTTEHISEECKGAAGKLKIAAPSNLTKVLLQPMLNAFMLKHPAISIE 123

Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L + ++     +D  D  I  R  P + S+LI R++  +     A+P YLKN  EP   Q
Sbjct: 124 LHMSSE--PEQLDPTDWDIMFRVGPQRDSTLIARRISAVKDILVASPIYLKNNPEPKHAQ 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+    L+   + D N         G       + N    + + C  G GI L+
Sbjct: 182 DLHDHTLLKGNPLLRWRISDHNGDTVAINERG-----LFEANQLDVVRKACCAGLGITLM 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P+ +++   ++  LVRI+ +       VY  Y        KL+ F  F
Sbjct: 237 PNVMLEQYIESGELVRILNNWSANPREVYLLYNHRDYQPEKLRLFIEF 284


>gi|17547046|ref|NP_520448.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17429347|emb|CAD16034.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 299

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 132/286 (46%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F      GS + AA +L LS     RQ+  LE  +G+KL  R  R  +LT+ G   +
Sbjct: 7   MQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGTLGVKLLNRTTRRQSLTDGGRLFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +LE  Q ++ ES   P G+LRI+  I  G   L   L EF+  +PDI ++L 
Sbjct: 67  ERAKNILAELEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPDITVELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D A R    +  S L+ R+L    +   A+P YLK    P + ++L 
Sbjct: 127 LTNRTVDLVEEAFDAAFRT-GDLPDSGLMARRLAPHRLMLCASPGYLKMRGHPRTPEDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KH  + F     +    F      D  +  P       +S  ++    V G GI L P  
Sbjct: 186 KHECLVFAHTSLRTQWSFEG---PDGSVKIPIKGKFLADSGEALRAAAVAGVGIILQPAE 242

Query: 248 IVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ ++     L RI++       +++  Y    + T KL+AF +F+
Sbjct: 243 LLAEDIQTGLLTRILKRYEPTPRSLHVLYAPDRRMTQKLRAFLDFV 288


>gi|148253786|ref|YP_001238371.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405959|gb|ABQ34465.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 297

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 127/277 (45%), Gaps = 14/277 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+ F  V R  SFT AA +L +SQS++S  I  LE+ +G++L  R+ RG+  TE G +
Sbjct: 7   DHLKAFKAVGRERSFTKAAAKLGVSQSALSHTIRELESRLGVRLLTRNTRGVNPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R  +     +E     L++   +P+G +RI+      + +L   LK  L  YPDI ++
Sbjct: 67  LLRTVAPRLDDIEAELASLRDFQDRPAGTIRISAGDHAVRAILWPKLKRLLAAYPDINVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ DNK +DI  +  D  +RL + +    +  R    I      AP YL     P    +
Sbjct: 127 LVSDNKLVDIVEEGFDAGVRLGEQVAKDMIAVRISPDIRFAVVGAPSYLDGRSPPERPDD 186

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  H  I     T G L     E       V R  G+     L  NS   + +  + G G
Sbjct: 187 LVGHRCINLRLSTHGGLYAWEFEKRGKELKV-RVEGQ-----LAFNSIFEVYEAALAGFG 240

Query: 241 IALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYP 274
           +A +P D ++ D     L R++ED   P    +  YP
Sbjct: 241 LAYVPEDMVLADVAGGRLRRLIEDWCVPWTGYHLYYP 277


>gi|34496588|ref|NP_900803.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34102442|gb|AAQ58808.1| probable transcriptional regulator LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 321

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 139/296 (46%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  + R GSFT AAE+L  ++S +S+ +  LE + G  L  R+ R + LTE G
Sbjct: 8   DAQALLAFDALVRRGSFTAAAEELDCTKSRVSQLVKALEKQFGTVLVLRNTRRVALTETG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L     E+   LE  +I++ E+  + SG L I++     Q LL   L E  +L+P +Q
Sbjct: 68  QRLAVHARELRSLLERARIDINEAEGEVSGPLVISSITSFAQYLLAPILAELAVLHPCLQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L ++N+  D   +  D  IR R  +   +L+ + L  +   A+A+P YL       + 
Sbjct: 128 LKLQVENRLQDPIAEGLDFCIRTRN-VHDDALVAKPLGLVREWAFASPDYLAKAPPLATP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I      PK  +   WL   D    + R+   L  + Y  ++   + GSG+A
Sbjct: 187 DDLPLHR-ILLDTSRPKLRDTPEWLLEKDGQQKQVRVQPVLSSHQYAPLLSAAIAGSGVA 245

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LLP Y+  +   +  LV ++       + VY  YP       K +AF   +  + R
Sbjct: 246 LLPAYVASEHLRSGRLVPVLPGWSHDCWPVYLVYPYRHPLPRKYEAFIQHVVPRMR 301


>gi|327480180|gb|AEA83490.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 299

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 132/281 (46%), Gaps = 25/281 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  V   GSF  AAE+L  S S +SRQI+ LE  +  +L YR  R ++LTE G 
Sbjct: 4   WEGLDEFVAVVECGSFMRAAERLRASSSHVSRQIARLEERLQARLLYRTTRRVSLTEAGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +   + + +    P+G LR+   +  G+  +   + EF+  +P +++
Sbjct: 64  TFFARCQRLIEERDDAFLAISDLHSAPTGLLRMTAAVAYGERFIVPLVNEFMARHPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL K +  S L+  ++    M+  AAP YL+    P ++ 
Sbjct: 124 DIELSNRTLDLVQEGYDLAIRLGK-LGESRLVATRIAPRAMYLCAAPGYLERYGRPHTLS 182

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVL 237
           EL +HN LI   D+         W    D      +P G  R      NS  +++   + 
Sbjct: 183 ELARHNCLIGTSDV---------WSFQSDGREQHFKPSGNWR-----CNSGQAVLDAALR 228

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           G G+  LPDY V +      LV ++E    P   V+  YP+
Sbjct: 229 GFGLCQLPDYYVLEPLRRGELVSLLEANQPPDTAVWAVYPQ 269


>gi|281177428|dbj|BAI53758.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|330910054|gb|EGH38564.1| transcriptional regulator LysR family, yafC [Escherichia coli AA86]
          Length = 304

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHICLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV ++ D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIARGELVELIADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|254237602|ref|ZP_04930925.1| hypothetical protein PACG_03684 [Pseudomonas aeruginosa C3719]
 gi|126169533|gb|EAZ55044.1| hypothetical protein PACG_03684 [Pseudomonas aeruginosa C3719]
          Length = 312

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G +  
Sbjct: 7   MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD+ I+L 
Sbjct: 67  ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+ +L+
Sbjct: 127 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           +H  +   D  P   E   W+   ++  GE  +S      VN    + Q      GIALL
Sbjct: 187 RHVCLRLQD--PAYPE--GWIFADEK--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y+      N  L+R++        T+Y  YP            R ++  K R W
Sbjct: 241 PSYVAAAALRNGELLRVLPGHAMHQRTIYALYPS-----------RRYLDAKIRTW 285


>gi|221201991|ref|ZP_03575027.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia
           multivorans CGD2M]
 gi|221204879|ref|ZP_03577896.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia
           multivorans CGD2]
 gi|221175736|gb|EEE08166.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia
           multivorans CGD2]
 gi|221178074|gb|EEE10485.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia
           multivorans CGD2M]
          Length = 317

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D ++ F       S T +A +L LS+S +S++IS LE  +G++L  R  R +  TE 
Sbjct: 1   MNMDDIQAFLFAVERQSITDSARRLGLSKSVVSKRISDLERTLGVQLLMRSTRNVIPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++V S+   +L      + E +    G+LR+   + L +  L   +  F   +P +
Sbjct: 61  GRAFYQVASQAMRQLVDVSEAIAERAHGVCGELRVTAPVSLTRRWLGSAIAAFAASHPPL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  D++ +++ ++  D AIR  + +  S+LI R++ +       +P Y+    EP S
Sbjct: 121 RVTLETDDRIVNLDVERFDVAIRSAR-LPDSALIARRIGSCERVIVCSPEYIAKHGEPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLG 238
           I +L KH  + +    P       W        G+PR     S    N+  ++    + G
Sbjct: 180 IDQLLKHRCLNYSTAAPSA----TWSFAAPDGHGKPRAINPTSAFLSNNGETLCDAAIHG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GIALLP YIV D   +  L R++ D       VY  Y  +   + KLK F
Sbjct: 236 VGIALLPRYIVDDALRDGRLARVLADASPQDEIVYAVYARSPFVSNKLKLF 286


>gi|152983030|ref|YP_001352585.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151283107|gb|ABR91517.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 305

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 142/297 (47%), Gaps = 12/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  +GSF+  A +   +QS++S+Q++ LE E+G++L  R  R L LTE+G +  
Sbjct: 7   MKVFVRVVEAGSFSAVAHESDTTQSAVSKQVAALERELGVRLLTRTTRSLALTEEGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   + ELQ    + +G LRIA ++  G+  L   ++ FL  +  ++I L 
Sbjct: 67  EQLRRLIAEISEAEGELQRGEQQLTGWLRIAASVGFGRLKLMPLVQSFLAEHRGVKIDLR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL----KNCREPLSI 183
           L +  ID+     D A+RL   +  SSLI R++ T      A   YL    K  + P++ 
Sbjct: 127 LHDGFIDLVEQGIDVAVRL-GDLPDSSLIARRVGTASRMLMAHRSYLRSLPKGTKTPITP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239
            +L +HN I + +L  +   +F         IG  RI      LQ NS   I    + G 
Sbjct: 186 DDLSEHNCIVYTELAMRNTWNFKAGPGAPDAIGTTRIVRVEGNLQTNSSEVIRASILGGM 245

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI   P ++ +    +  + RI+ D  T    +    P   +++ K+KAF   +  K
Sbjct: 246 GITYSPTWLFEKELASGEVQRILPDWETLPIPIQLVSPRERRHSAKVKAFAEHVGQK 302


>gi|162453042|ref|YP_001615409.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161163624|emb|CAN94929.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
          Length = 303

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 10/250 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R F  VAR  SF+ AA  L L+ SS+S+Q++ LE  +G +L  R  R ++LTE GS 
Sbjct: 9   DEMRAFLEVARRQSFSAAARALGLTSSSVSKQVARLEERLGAQLLRRTTRRVSLTEAGSL 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +E  +  + +    P G LRI+    LG   +   +      YP+++I 
Sbjct: 69  YAERADRILSDIEEARRAVADLDGTPRGTLRISAPTVLGSIRVAPAVLACRAKYPELRID 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D A+RL   I  +SL+ R+L        A+P YL+    P  +++
Sbjct: 129 LDLTDRIVDLVAERIDVAVRLAAEISPASLVARRLADDLRVLCASPRYLRRHGTPRRLED 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H+ IT  +L P       W  T+  P GE   P     + +  +++    V G G+A
Sbjct: 189 LADHDCITL-NLDPVA----RW--TLVGPEGERVVPVSGTFRSSDTITLRDAAVAGVGLA 241

Query: 243 LLPDYIVKDN 252
            LPDY+V+D 
Sbjct: 242 NLPDYVVQDQ 251


>gi|295676755|ref|YP_003605279.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436598|gb|ADG15768.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 355

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 11/286 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE G+  
Sbjct: 6   SMRVFVKVADLGSFVGAAGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGATY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE  +  +   + +P G LRI   +  G + L   ++ +   YPD+   +
Sbjct: 66  LERVRHILADLEGVEQMVVARNHEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVPDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T +M   A P YL     P   ++L
Sbjct: 126 TLADRHVDLVEEGFDVGILVARQMRSASIVTRRLTTGYMTVCATPEYLAQHGTPKRPEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
             H+ ++         +          P GE R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 LGHSCLSR-----PTDQGGGEERVFSGPDGEVRVRPTNAIAANNAEMLRQFALLGMGVAI 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR+++    P   +   YP  L    K++ F
Sbjct: 241 LPSYLIGRDLAAGRLVRLLDQYSLPPIEITIAYPSRLHLPAKVRTF 286


>gi|209519774|ref|ZP_03268560.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499784|gb|EDZ99853.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 334

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 102/187 (54%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q  + KP GKLRI     +G+ L+   L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPALCEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC +R+   +Q SSL+ R++        A+P Y+K    P S+++LD
Sbjct: 127 LTDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCASPDYIKRAGTPASLEDLD 185

Query: 188 KHNLITF 194
            H  + +
Sbjct: 186 NHKAVNY 192


>gi|149203317|ref|ZP_01880287.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
 gi|149143150|gb|EDM31189.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
          Length = 301

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 136/297 (45%), Gaps = 26/297 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   
Sbjct: 6   EMEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V +        +      PSG LRI+   D G N L   L +FL  +PDI + +
Sbjct: 66  YDRALRVLNDAGEADALVSSMQSDPSGLLRISVATDFGVNHLSPVLGQFLDEFPDITVNM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P  I +L
Sbjct: 126 VLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPGYFQKHGRPQKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIA 242
           ++H L+ +       +    W  T   P GE R       L VN   S++   + G GIA
Sbjct: 185 NEHKLLHYSSQAGGAV----WKLTA--PSGEKRQVRTAGGLSVNDGQSLLNAAISGLGIA 238

Query: 243 LLPDYIVKDNPNLVRIMEDVIT----PSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            LP ++        R M D +     P        +Y  YP       K++AF +F+
Sbjct: 239 YLPSFLYS------RAMADGLVEDAMPELPLELQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|92113112|ref|YP_573040.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796202|gb|ABE58341.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 300

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 17/292 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD++  F  VAR G+F+ AA  L +S S +SR I  L++++G  L YR  R   LT+ G+
Sbjct: 4   WDRIEAFIEVARLGTFSAAARHLQVSTSHVSRLIGQLKSQLGTTLLYRTTRQTRLTDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    ++      +  + +   +P G LR+      G+  +   + +F   +P ++I
Sbjct: 64  LYYRHCRHLFDGFREAEEAIVDFQSRPKGTLRLTCATTFGERYIAPLVNDFQCRHPQLEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   N+ +++  +  D AIR+   ++ SSLI R+L     +   +P Y +    P S+ 
Sbjct: 124 DMHFTNRRVELVEEGFDVAIRM-GVLRDSSLIARRLCERREYVVGSPAYFERAAPPHSLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL  HN +       +   D +WL  ++    E R+    + NS  +++   + G G+A 
Sbjct: 183 ELPHHNCL-------RGSRD-SWLFEINGHRREVRVDGRWRANSGPALLDAVLKGLGLAQ 234

Query: 244 LPDYIVKDNPNLVR--IMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290
           LPDY V   P+L R  ++  +    FT   V+  YP     + K++ F +F+
Sbjct: 235 LPDYYV--TPHLARGELVPVLTAYQFTDTAVWAIYPRHRHLSPKVRQFVDFL 284


>gi|206558465|ref|YP_002229225.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198034502|emb|CAR50367.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 294

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 133/284 (46%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLTE+G   +  
Sbjct: 9   AFVRAAEALSFVAAGRALGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTEEGRHFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +       +  +  S+ +P GKLR++  + +G   L   L EF   YPD+++ L  +
Sbjct: 69  CQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + +EL+ H
Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTPRELEAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + +    P   +  +W    D        + +  N+  ++    + G GI  +PD++ 
Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +D   +  LV +++D           +P + + + KL+ F +F+
Sbjct: 245 RDALEHGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288


>gi|311106706|ref|YP_003979559.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761395|gb|ADP16844.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           109 [Achromobacter xylosoxidans A8]
          Length = 311

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 135/270 (50%), Gaps = 7/270 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F      G+ +  A +  LSQ ++S+ ++ LE ++ ++L  R    +  TEQG + +
Sbjct: 7   MRAFVRAVELGTLSAVAREQALSQPALSKIVAALEKDLNVRLLERSTTRVVPTEQGKRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + V  +      + +  + KP+G LRI   + LGQ  L   +++FL  YPDIQ++LI
Sbjct: 67  ERATRVLEEYSEAVADARGQTEKPAGFLRINAPVALGQFRLNALVRKFLDEYPDIQVELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D A+RL   +  ++ I RK      +  AAP YL    +P + ++L 
Sbjct: 127 LNDRFVDLVEEGVDVALRLGGNLPPNA-IARKAAESPRYLVAAPSYLAQRGKPRAPRDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F  L      + +  AT+     + R    +VN+ L+I +   +G+GI L P +
Sbjct: 186 AHEYVRFAWLAAGDTLELHQGATLATVQTQGR---FRVNNALAIRESLAMGAGIGLCPAW 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           +V+D   +  L+R++          Y  YP
Sbjct: 243 LVQDLVASGELLRVLPKWSATPQEAYLIYP 272


>gi|91780255|ref|YP_555462.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692915|gb|ABE36112.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 325

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 3/246 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  V  +GSF  AAE L +SQ +IS+ IS LE  +G  L YR +R L+LT  G
Sbjct: 6   DFEAWAIFARVVDTGSFAKAAESLAMSQPTISKAISRLEQRLGTALLYRTSRRLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    + ++ E  + E    +  P G +R+A  +  G   L   +  FL  YPD+ 
Sbjct: 66  RMAMERAIRIMNEGEAVEAEASAQAATPHGTVRVAAPMSFGLKYLTPLVPAFLDRYPDVN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L LD+  +D+  D  D A+R+ + +  SSL  R+L  +     A+P YL     P   
Sbjct: 126 IELALDDTLVDVVADGFDVALRIAE-LADSSLRSRQLCAVRRPLVASPGYLDRHGRPRHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+ H  + + +L    +  F+     +     P    +  N+  ++    + G G+AL
Sbjct: 185 RELEHHACLIYTNLPTPGLWRFS--HATEGECAVPVKGKMWSNNAEALGPALLAGHGLAL 242

Query: 244 LPDYIV 249
            P+++V
Sbjct: 243 QPEFVV 248


>gi|288961975|ref|YP_003452285.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914255|dbj|BAI75741.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 297

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 125/253 (49%), Gaps = 11/253 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A   SF  A  +L +S S++ + I+ LE   G +LF+R  R ++LTE+G+  H  
Sbjct: 9   AFVQAAEDLSFVAAGRKLGISASAVGKSIAKLEESAGTRLFHRTTRRVSLTEEGAAFHER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L   +  L  ++  P G+LR++    +G + L   + EF  LYPDI++ +  +
Sbjct: 69  CRRILDDLRDAETMLSNATGIPRGRLRVSVPT-IGYHFLLPVIPEFRRLYPDIELDIDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ ID+  +  D  IR   P+  SSL+ R+L        A+P YL+    P  + EL+KH
Sbjct: 128 DRLIDVVEEGLDAVIR-SGPLTDSSLMSRRLGPFRFVLCASPSYLERKGIPRHLHELEKH 186

Query: 190 NLITFGDLIPKCMEDFNW----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + + F    P   +   W     A VD P   P  S L  N+  ++      G GIA +P
Sbjct: 187 DCLRF--RFPTSGKIQAWRFRDAAGVD-PFRRP--SPLTCNNMEALRGAATAGLGIAYMP 241

Query: 246 DYIVKDNPNLVRI 258
           D++ +D+ +  R+
Sbjct: 242 DFLARDDVDAGRL 254


>gi|209518411|ref|ZP_03267234.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501132|gb|EEA01165.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 296

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 13/276 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F+ V  +G F+ AA +   SQS+IS+ I  LE  +G+ LF R  R +TLT+QG 
Sbjct: 4   FHELNAFFAVVEAGGFSAAARRTGESQSAISKAIGALEKRLGVPLFNRSTRSVTLTDQGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           K +  T  +  +++    EL  S++  SG +RIA     G+  +   + E L L+P +++
Sbjct: 64  KYYERTKPLLDEIDVADSELTSSTLDVSGLVRIACASTFGRLHVLPLVPELLSLHPGLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L +   D+  D  D AIR+  P+ +   + +++ +  +    +  Y +    P    
Sbjct: 124 DLVLSDYVRDMVEDRIDLAIRV-GPVNNPDSVVKRIASTPLVCVGSRRYFERHGTPKEPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGI 241
           EL  HN + +G L    +E  NW      P G    P    L  NS  +I    + G GI
Sbjct: 183 ELANHNCLLYGGL----LESANW--PFHGPRGRFSVPVRGNLSSNSVETIRSAVLAGVGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            L     + D   +P++V +++D I  +  V   +P
Sbjct: 237 GLFAKLSLADELEHPDIVTVLDDFIQDARDVSIIWP 272


>gi|78066743|ref|YP_369512.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967488|gb|ABB08868.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 321

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++++++ +  LE  + +KLF R  R + +T  G+
Sbjct: 4   FDAMQAFARVVEAGSFTKAAETLHMSRTTVTQLVQQLEARLRVKLFNRTTRKVVVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  +S  P G+LR+       + +L   L  F   YPDIQ+
Sbjct: 64  AYYDRVVRLLADMDDAETSLSAASASPRGRLRVDVPSPFARLILIPALPAFHARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R  +P    +L+ R++  + +  YA+P YL     P    
Sbjct: 124 DMGVSDRVVDVIGENVDCVMRGGEPTD-RALVARRVGDLRLGVYASPAYLARAGMPTHPD 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ F     G  +P  M       TV    G   ++    N+YL   +  + 
Sbjct: 183 ELEDTHHRIVGFLWARTGKALPFAMTCDGEQVTVR---GRYVLAVDDGNAYL---EAGLA 236

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LPDY+    +    LV + E        +Y  +P     + KL+ F +++
Sbjct: 237 GLGILWLPDYMAGVHRARGELVPLFEQWQLEPMPMYVAFPPNRHVSAKLRVFVDWV 292


>gi|312883221|ref|ZP_07742949.1| putative transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369084|gb|EFP96608.1| putative transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 291

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 150/291 (51%), Gaps = 13/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA   SFT AA++L+ S + ISR+++ LE  + +KL  R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAEVESFTSAAKKLNTSVAQISRRVASLEERLAVKLLNRTTRRVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P G +++   +  G+  L   L +FL LYP + 
Sbjct: 63  QLYYQQCKHLVEGLELAELAVTQMQSTPKGMVKVTAPVTFGEQNLAPLLHQFLELYPQVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L N+ +D+     D AIR+ + ++ S+++ ++L T  ++  A+P YL+   EP ++
Sbjct: 123 LDLMLTNQQLDLIETGVDIAIRVGR-LRDSTMMAKRLATRQLYVCASPSYLEKFGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL  H  +  G +      D+ W    ++     RIS  ++ NS  ++      G G+ 
Sbjct: 182 SELANHQCLA-GSV------DY-WRFRNNKTEQSVRISGRIRCNSGYALHDAAKRGIGLV 233

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPD+ V+++    +LV ++ +       ++  YP+    + K++   +F+
Sbjct: 234 QLPDHYVQESLEQGDLVEVLAEYRDTREGIWALYPQNRNLSPKVRLLIDFL 284


>gi|118161335|gb|ABK64019.1| putative LysR transcriptional regulator [Janthinobacterium lividum]
          Length = 326

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 112/203 (55%), Gaps = 3/203 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++VF  V  +G F+ AA++L +S SS++ Q++ LE   G++L  R  R ++LT +G +
Sbjct: 25  EAMKVFCAVVEAGGFSKAAQRLGISTSSVTNQVAALEKHFGVRLLQRTTRSMSLTAEGMQ 84

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H    +V   +   +  L +++ +PSG LR+     + +NL+   L  F+  YPDI ++
Sbjct: 85  CHAQARQVLADMAALEASLLQAAARPSGSLRVDMPSSISRNLVAPALPRFIAAYPDISLR 144

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  +R+ +P Q SSL+ R L+ +     A+P ++     P + QE
Sbjct: 145 LTVSDRLVDMVEEGIDVMLRIGEP-QDSSLVARSLLGMDYLCCASPAFVARHGMPQAPQE 203

Query: 186 LDKHNLITFGDLIPKCMEDFNWL 208
           LD+ + + F  L PK      WL
Sbjct: 204 LDQFSCLHF--LYPKSRLVRPWL 224


>gi|86358163|ref|YP_470055.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282265|gb|ABC91328.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 307

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 148/303 (48%), Gaps = 17/303 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E G++L  R  R L LT+ 
Sbjct: 2   LDLNDIVIFARVVEAGSFTVAARLLAMPKTTVSRRIAALEREFGVRLLQRTTRSLRLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +SE    LE   + L E+  +P+G +RI+  +  G + L   + +FL  YP  
Sbjct: 62  GRLYYEESSEALRTLEQANLRLAEARAEPAGTIRISAPVGFGGHFLAAAIFDFLAAYPKT 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++  +  D A R    ++ S+LI RKL + +    A+P YL  C  P  
Sbjct: 122 KVELRLTDDRLNLIENGIDLAFRT-GILEDSTLIARKLGSTYRILCASPGYLARCGTPGR 180

Query: 183 IQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
             +L  H+ +  G      P  +E  +   TV        +S     N   ++M   + G
Sbjct: 181 PADLTAHDCVIAGPSAANAPWVLEGADIRETVT-------VSGRFAANEMQAVMAAAIAG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LK 293
            GIA LP  + +    +  L R+++   TP+  ++  YP +   +  +KAF +     L 
Sbjct: 234 YGIAQLPHGVAEACIADGRLRRVLDGYTTPAGGLHVVYPSSQHLSPLVKAFIDLAATRLN 293

Query: 294 ARD 296
           ARD
Sbjct: 294 ARD 296


>gi|256061854|ref|ZP_05451989.1| Transcriptional regulatory protein, LYSR family [Brucella neotomae
           5K33]
          Length = 301

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 141/299 (47%), Gaps = 27/299 (9%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 8   AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 68  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+      
Sbjct: 128 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTLK 186

Query: 182 SIQELDKHNLITF-GDLI--------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           S ++L++H LI +  DL+        P+   D+                  +V+S L  +
Sbjct: 187 SPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWK--------------PAFEVSSSLGQV 232

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 233 EAVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 289


>gi|254437384|ref|ZP_05050878.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198252830|gb|EDY77144.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 294

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 144/300 (48%), Gaps = 8/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DW  L+ F  V ++G+   A  QL  SQ ++SRQ+  LET+ G+ LF R    L LT
Sbjct: 1   MNIDWSLLKTFLTVVQAGTVAQAGAQLACSQPTVSRQLKELETQTGLTLFDRRGYRLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ +      +  + +   + +       +G +RI+T+  +  + L   L      YP
Sbjct: 61  DAGASILEFAQNMADQADHLALAIAGKETVVNGTIRISTSEVIAYHFLPPVLVTLQEQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I +++I++N   ++S   AD AIRL +P     L++ K+ T+ M  +A+  YL+    P
Sbjct: 121 EIDVEIIVENSVANLSAREADIAIRLFRP-DKLGLVRTKIGTLEMGVFASKSYLELYGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  HNL+ + D   + ++ F        P   P +  ++ +++L        G+G
Sbjct: 180 RTLDDLVYHNLLGY-DQSAEILDGFR----KHLPDANPSLFSVRCDNHLVYWNMIRAGNG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298
           I      +   +  L R++ D+      V+    EAL+ T +++A    +   L  R W+
Sbjct: 235 IGFCSTLMASQDKMLTRVLPDLKPDGNDVWLATHEALQKTPRVRAVWELLSSQLTKRLWE 294


>gi|331671738|ref|ZP_08372534.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
 gi|331070727|gb|EGI42086.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
          Length = 304

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFYSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETLDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|254438687|ref|ZP_05052181.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198254133|gb|EDY78447.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 292

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 143/298 (47%), Gaps = 10/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AA+ L +  +++ R I GLE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAFQVARIGTVSGAADVLGVHHATVIRHIDGLEKRLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +V +    +       ++      SG L + T++ +   +L   L  F    PDI 
Sbjct: 63  QDLMQVAAATEDQFTQLAGRIRGHGDGVSGDL-VVTSLVVLSPMLTPILANFRRENPDIT 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + D +   +    A  AIR  + P Q  +++Q   +   MH  AAP Y+ +   P  
Sbjct: 122 VRFLTDERLFRLEYGEAHVAIRAGEVPNQPDNVVQ-PFMRQKMHLAAAPSYVADHGTPDG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           I +L  H  I  G    + +  FN WL    R + E RI   +   Y+++    ++G+GI
Sbjct: 181 IDDLPNHWFI--GHDNKENLAPFNRWLT---RQVPESRI-VFRTTDYIAMFDAVLVGAGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +  + ++  P+L+ ++      S  ++      L  T K++ F  F+  ++  W F
Sbjct: 235 GFVTTWEMQQYPDLIDVIPSQDDWSAPLWLVTHVDLHRTTKVQTFLAFLKKESESWAF 292


>gi|304412332|ref|ZP_07393940.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307306116|ref|ZP_07585861.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304349367|gb|EFM13777.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306910989|gb|EFN41416.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 337

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 139/284 (48%), Gaps = 13/284 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS  +  
Sbjct: 11  VFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V   +E+T+ +L      PSG+L+IA  I  G  LL       L  +P I + L+L 
Sbjct: 71  CRKVIAIVESTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAHPQISLNLLLQ 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  IDI  +  D AI +  P+  S+LI R L    M   A+P YL        + ++ KH
Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARHLADWRMLLCASPDYLP-------MHKIFKH 182

Query: 190 --NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L  F  +   C           +   E     + VN+  +++Q  + G G A LP+ 
Sbjct: 183 PAELAAFNRINHPCANSETLTHARSQECFELTSQRITVNNMQALIQLTLDGLGFAALPEP 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            V    ++  LV ++ +    +++VY       K   K+K   N
Sbjct: 243 EVHKYLESGQLVPLLPEWSLNTYSVYSVTSARDKQPAKVKEALN 286


>gi|296159411|ref|ZP_06842236.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295890395|gb|EFG70188.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 298

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 146/306 (47%), Gaps = 20/306 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    + H +E  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGETFLQRARAILHAMEEAEESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  + + +D+     D AIR+ + +Q S+L  R L T  +   A+P YL    EP
Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRIGE-LQDSTLHARALGTSKLRVLASPAYLAEYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIG------EPRISCLQVNSYLSIMQ 233
            S++ L +H LI F        E  N W     R  G      EP I+    +S  ++ Q
Sbjct: 180 RSVEALREHRLIGF-----TAPEHLNRWPLREGRKGGAAALKIEPAITA---SSGETLRQ 231

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289
             + G GIA L D++   +     LV I+ +V+      V   Y ++    G+++ F +F
Sbjct: 232 LALSGWGIACLADFMSAADVREKRLVPILGNVLVDERQRVSAVYYQSASLAGRVQCFLDF 291

Query: 290 IFLKAR 295
           I  + R
Sbjct: 292 IAARVR 297


>gi|254707242|ref|ZP_05169070.1| transcriptional regulatory protein [Brucella pinnipedialis
           M163/99/10]
 gi|254709216|ref|ZP_05171027.1| transcriptional regulatory protein [Brucella pinnipedialis B2/94]
 gi|256030739|ref|ZP_05444353.1| transcriptional regulatory protein [Brucella pinnipedialis
           M292/94/1]
 gi|261314723|ref|ZP_05953920.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261316719|ref|ZP_05955916.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|265987790|ref|ZP_06100347.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|261295942|gb|EEX99438.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261303749|gb|EEY07246.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|264659987|gb|EEZ30248.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
          Length = 297

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G +L 
Sbjct: 9   LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI I+L 
Sbjct: 69  AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   Q+L 
Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+ I     +P   E F W  T  R   + RI+    L   S   ++Q C+ G G+A L
Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P DY  +  ++  LV ++ D        +  YP   ++   L A 
Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFAGYHLYYPNRRQHPPALAAL 289


>gi|316933355|ref|YP_004108337.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315601069|gb|ADU43604.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           DX-1]
          Length = 315

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 7/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + +DW+ +  F  VAR  S   AA +L +  +++SR++  LE  +   LF R   G TLT
Sbjct: 8   IRYDWNDVVYFLEVARQRSLVRAAAKLKVDHTTVSRRVRELERSLNSTLFKRSKSGFTLT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L +    +  +  +    +   +    G +RIA    +G   L   + +F  +YP
Sbjct: 68  EIGMRLLQYAEGMESQANSIVEAIGTDTADAGGAVRIAAMEGIGSFYLTRCIVDFNKIYP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++LI D + +D+S   AD  +   +P Q   L  +K+    +  YA   Y      P
Sbjct: 128 SIQVELITDTRLLDLSRREADIFVSFFRP-QGKRLSIKKVGEFRISLYATDAYFAGRSPP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL+ H  I F +      E+  WL+ V RP   P  +  +  S ++       G G
Sbjct: 187 TTVKELESHAFIDFIEDHIYSQEN-RWLSDVLRP---PH-TIFRSTSLVAQSIAVSAGQG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA+LP Y+   +P L+ +M ++ T +  ++    E L +  ++KA  +F+
Sbjct: 242 IAMLPSYVASGHPELLPVMPELFT-TRDIWLSVHEDLLHVARIKAVISFL 290


>gi|300715229|ref|YP_003740032.1| transcriptional regulator, LysR-type [Erwinia billingiae Eb661]
 gi|299061065|emb|CAX58172.1| Transcriptional regulator, LysR-type [Erwinia billingiae Eb661]
          Length = 295

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 144/292 (49%), Gaps = 16/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR++ VV  SGSFT AAEQL LS+  +SR+++ LE  +G +L  R+ R L++T+ G  
Sbjct: 4   DDLRIYLVVIASGSFTAAAEQLMLSKQYVSRRMAALEDSLGARLLIRNTRKLSVTDTGHT 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    +   +E  Q  + E      G  RI+  +  G + L   + EFL  +P +  Q
Sbjct: 64  FAQHAQRILEDIEEAQQAVSERHQALHGAFRISMPMSYGMSHLSPLIAEFLSRHPAVNFQ 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D AIR+   +  S+L+ RKL  +     A+P YL+   +P    +
Sbjct: 124 IELADRYVDVIGEGFDMAIRI-GTLADSTLVARKLGELPRVICASPAYLQRLPQPEKPDD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGI 241
           L +H  + +G           W   VD   G+ +I      +Q N+   ++   V G G+
Sbjct: 183 LLQHACLRYGR-----EGQTGWELKVD---GKRKIMAVSGPVQSNNGEVLLDAAVAGLGL 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LLP++IV        LVR++++ I    ++   +P+  + +   + F  F+
Sbjct: 235 VLLPEFIVGGALARGELVRVLDEYIPSPLSLNAVFPQHRQRSEINRQFLAFL 286


>gi|264676383|ref|YP_003276289.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262206895|gb|ACY30993.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 287

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 137/289 (47%), Gaps = 20/289 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +   GS   AA+ L LS +++S+Q+  LE ++G  L  R  R ++LT+ G   +
Sbjct: 1   MRAFRRIVELGSIARAADALDLSSAALSKQLRALEAQLGAVLIQRTTRRMSLTDTGRAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +T +  ++  S++ +G+LR+   +    + L   L  F+  +P +QI L 
Sbjct: 61  AECCRLLDGFDTLEQSVRAQSLQVTGRLRVNAPLSFALSTLAPLLARFMQRHPQLQIDLS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D      D +IRL   +  SSLI R+L ++     A+P YL+    P S+  L 
Sbjct: 121 MEDRLVDAVGQGFDVSIRLSAELADSSLIARRLASLSQMLCASPAYLQQHGRPASVAVLR 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+ +             LA VD  +  P  +   VN+ L + +  V G GI  LP +
Sbjct: 181 GHALLNYS------------LAQVDDGLQVPSEARASVNNSLMLRELLVAGMGIGALPSF 228

Query: 248 IVKDNPNLVR------IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +  P + +       ++D   P   VY  YP       K++AF +F+
Sbjct: 229 LAR--PAIAQGQLEALALQDWAEPPRHVYVVYPTQRHLLPKVRAFVDFL 275


>gi|307544078|ref|YP_003896557.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307216102|emb|CBV41372.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 289

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 148/285 (51%), Gaps = 11/285 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R F  V R+G+   AA++L L Q+++ R+++GLE  +G +LF R   GLTLT+ 
Sbjct: 1   MNWDDVRFFLAVYRAGTLRGAAQRLALDQTTVGRRLTGLERTLGSRLFLRTKGGLTLTDS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G ++   T+E   +L  +   L E +  + +G++R+ TT  L  + +   ++     +PD
Sbjct: 61  GRQVL-PTAENMERLAVSFERLSEGADERVAGEVRVTTTDALAVDFVVPAIERLRTTHPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L    + +D++   AD A+R  +P Q   LI R+L    +  YA   YL+   EP 
Sbjct: 120 IRVILSTTTRLLDLARREADVAVRTLRPEQ-PDLIVRQLGRWEVGLYATQGYLERHGEPH 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +    H++  + + +    +D   LA V  P G+ R+   +++S L +  +   G  +
Sbjct: 179 PDEGFAGHDIALYQEGVTGRQDDT--LAGV--PRGQGRVVA-ELDSSLMLATFVRAGLAL 233

Query: 242 ALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLK 284
             LPDY+ + +  LVR+  D    TP +  +    + L +T +++
Sbjct: 234 GELPDYLAQRDRRLVRVWPDRHRATP-YEAWLVLHQDLAHTARVR 277


>gi|150398061|ref|YP_001328528.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029576|gb|ABR61693.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 315

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 12/292 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F WD L+ F  VAR+G  + AA +L  S +++SR+I  LE  + +KLF R+ RG  LT 
Sbjct: 4   NFTWDDLQFFLAVARTGQLSTAARRLRTSHATVSRRIDRLEFALKVKLFERNPRGYVLTT 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  + E  Q+++ +      G +R++T    G   L   L +F+  YP+
Sbjct: 64  MGQRFVETAERIERETEQLQLDISDGMTAQRGVVRLSTLEGFGNFFLADRLSDFVGRYPN 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+   + + +S   AD A+ L  P ++       L    +H Y A  YL       
Sbjct: 124 ISLELVAIQQIMSLSRKEADVAVALAAP-KAGPYHSEVLTPYTLHVYGARSYLAGHPLIR 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLG 238
           +  +L  H    +       ++D  +   +D  +GE  P +    Q +S L+ ++    G
Sbjct: 183 TRNDLGSHRFAGY-------IDDMIFTPGLDY-LGELQPGLRAHFQSSSILTQLKAVRQG 234

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+ +LP ++ KD P+L  ++ D I    T +      L    ++KA R+F+
Sbjct: 235 LGLCVLPHFMAKDEPDLEIVLPDEIALQRTYWLICHRDLIGMPRVKALRDFL 286


>gi|49085882|gb|AAT51312.1| PA2877 [synthetic construct]
          Length = 298

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 150/296 (50%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA +GSFT AA+ L + ++++S  +  LE ++G +L +R  R + LT  GS 
Sbjct: 5   DSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTHDGSV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +   +E  +    + S + SG+L++     + + L+   L EF   +PDI+++
Sbjct: 65  VLERCRHLLEDMEELESLFHDGS-RASGRLKVDVPSRVARLLIAPALPEFFRQHPDIELE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC +R+ + + +SSL+ R+L  + +   A+P YL+   EP +  +
Sbjct: 124 LGSSDRSVDLVQEGVDCVLRVGQ-LGNSSLVARRLGEMQLINCASPAYLEEHGEPRTPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           LD+H  + +    P       W    D R +     S + VN+  S +  C+ G G+  +
Sbjct: 183 LDRHWAVNYAS--PSSGRVLPWEYREDGRTLTRALRSRVTVNNAESYIACCLSGLGLIQI 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           P Y V+++     L  ++      +   Y  YP     + +++AF +++   L+AR
Sbjct: 241 PAYDVREHLQRGELREVLPQWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLLRAR 296


>gi|148559455|ref|YP_001258105.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148370712|gb|ABQ60691.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840]
          Length = 297

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G +L 
Sbjct: 9   LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI I+L 
Sbjct: 69  AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   Q+L 
Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+ I     +P   E F W  T  R   + RI+    L   S   ++Q C+ G G+A L
Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITAQGRLVFTSIAQVLQACLAGFGLAYL 244

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P DY  +  ++  LV ++ D        +  YP   ++   L A 
Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289


>gi|89092406|ref|ZP_01165360.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
 gi|89083494|gb|EAR62712.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
          Length = 298

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 150/292 (51%), Gaps = 13/292 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D   +F  VA   S+T A  QL++ ++++SR++  LE  +G+KL  R  R L+LTE G
Sbjct: 3   NLDDTVIFNKVAELSSYTQAGLQLNIPKATVSRRVKQLEERLGVKLINRDTRKLSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVK--PSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             L+  TS +  ++   +IE   +S +  P+G+LRI   +++G  LL   + +F   +P 
Sbjct: 63  QYLYNSTSPLLSQV--LEIESSAASFQKHPAGELRITMPVEIGIRLLNEIICDFAKQHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + N  +DI  +  D AIR   P + S+LI +K+++       +P YL     P 
Sbjct: 121 IQLDIHMTNDVVDIIKEGFDIAIRGGSP-KDSNLIAKKIMSSRFFLCCSPEYLNEHGRPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H LITF    P        L   ++ +     + L  NS+  +++    G GI
Sbjct: 180 HPDQLKQHQLITF----PYSSYQQLKLMKGEQEVMVQANNRLSANSFDMLLKAAKKGLGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A++P  +  D   +  LV + +D  T    ++  YP+ +K T KL+ F +F+
Sbjct: 236 AIMPTSVCSDALKSGQLVSLFDDWKTDDIGLFALYPDRIK-TKKLELFIHFV 286


>gi|116053880|ref|YP_788317.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313112269|ref|ZP_07798039.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|115589101|gb|ABJ15116.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310884541|gb|EFQ43135.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 312

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G +  
Sbjct: 7   MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD+ I+L 
Sbjct: 67  ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+ +L+
Sbjct: 127 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           +H  +   D  P   E   W+   ++  GE  +S      VN    + Q      GIALL
Sbjct: 187 RHVCLRLQD--PAYPE--GWIFADEQ--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y+      N  L+R++        T+Y  YP            R ++  K R W
Sbjct: 241 PSYVAAAALRNGELLRVLPGHAMHERTIYALYPS-----------RRYLDAKIRTW 285


>gi|91782931|ref|YP_558137.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686885|gb|ABE30085.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 342

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 148/289 (51%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SF+ AA+ LH+++SS++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFSGAADSLHMTRSSVTTIIQALEAYLKVRLLNRTTRRISLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +   +E ++     +S  P GKL++     +G+ L+   L EF   YPDI++ L 
Sbjct: 67  ERCSRILADVEDSESSFSRASA-PRGKLKVDMPGSIGRLLIVPALDEFHARYPDIELMLG 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DCAIR+  P+Q S+L+ R++        A+P Y+    EP+S+ EL+
Sbjct: 126 VGDRAVDLIQDSVDCAIRM-GPMQDSTLVARRVGVSEFVTVASPDYIARNGEPVSLAELE 184

Query: 188 KHNLIT-FGDLIPKCME-DFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H  +  F     + +E DF     VD +P+     S L  N   + +Q  + G G+  +
Sbjct: 185 SHTAVNYFSSRNGRIVEMDF----VVDGKPVDVRMRSKLAANDGEAYLQCGLRGLGLIQV 240

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++     ++  LV ++ +     F +   YP+    + +++ F  ++
Sbjct: 241 PHFLALPHLESGALVEVLGNCRPSPFPISAVYPQNRHLSPQVRVFVEWV 289


>gi|171317219|ref|ZP_02906418.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097594|gb|EDT42429.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 330

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 151/304 (49%), Gaps = 31/304 (10%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE
Sbjct: 27  SPNLDDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTE 86

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP 
Sbjct: 87  AGERVFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQ 146

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ +D++ +  D  +R+   I +  LI R+L T H    A+P YL     P 
Sbjct: 147 LNVRLDLFDRLVDVAGEGYDLDVRIGDEI-ADHLIARRLATNHRVLCASPDYLARRGTPR 205

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI---- 231
           ++ +L  H+ +   +               D P G  R+      S ++V   LS     
Sbjct: 206 TLADLASHDCLAIKER--------------DHPFGVWRLNVRGETSTVKVGGALSTNHGE 251

Query: 232 --MQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +Q+ + G GI L   +      +   L R++ D I P+  ++  YPE +  + K++  
Sbjct: 252 VAVQWALAGRGIVLRSIWEAAPLIERGELCRVLPDAIQPA-NIWAVYPERVAASAKVRVC 310

Query: 287 RNFI 290
            +F+
Sbjct: 311 VDFL 314


>gi|117617497|ref|YP_854885.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117558904|gb|ABK35852.1| transcriptional regulators, LysR family [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 300

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 147/301 (48%), Gaps = 13/301 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +   +   +   GSFT AA++L ++++++SR+I+ LE  +G++L YR  R LTLTE 
Sbjct: 1   MDLNAALILVRIVDKGSFTAAAQELGMTKATVSRRIAELEQRLGVRLLYRSTRQLTLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +   S+   +L   ++ +  S  + +G L++A  I+ GQ ++   + EFL  YP +
Sbjct: 61  GEQYYLRCSKAVDELAQAELMVSASQQEVTGTLKLAVPIEAGQLVVGRLVAEFLQAYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L L N+ +D   +  D  +R+   +  S+L  R+L +      A+P YL        
Sbjct: 121 QVELELTNRIVDPINEGLDAIVRI-GDMSDSNLAARRLWSNARLICASPAYLARSPAITH 179

Query: 183 IQELDKHN--LITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++L  H    +T G L    C E  +    VD P      S  +VN+     +    G 
Sbjct: 180 PEDLVHHERVAVTSGFLASHWCFERDDKEVLVDPP------SRFRVNNITCAREAAKAGL 233

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+A LP  +  +   +  LV ++ +   P   +Y  +PE      KL+ F +FI  K  D
Sbjct: 234 GLASLPAMLCHEELASGTLVSVLPEWQQPRVPIYLLFPERRLMPRKLRVFIDFIVAKGAD 293

Query: 297 W 297
           +
Sbjct: 294 Y 294


>gi|261325861|ref|ZP_05965058.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261301841|gb|EEY05338.1| transcriptional regulator [Brucella neotomae 5K33]
          Length = 293

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 142/295 (48%), Gaps = 21/295 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+      S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTLKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRIS-----CLQVNSYLSIMQYCV 236
            ++L++H LI +       +ED      ++  +   P IS       +V+S L  ++   
Sbjct: 180 PEDLNRHRLIGY-------VEDL----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVR 228

Query: 237 LGSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+GI +L  +I   +P+LV ++ D VI  ++  +  Y E+ +   ++ A    I
Sbjct: 229 AGAGIGILHSFIACADPDLVPVLPDRVIHRAY--WLAYHESARTLRRVTAVSALI 281


>gi|254512192|ref|ZP_05124259.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221535903|gb|EEE38891.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 297

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 137/283 (48%), Gaps = 10/283 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++ F  VA++GS + AA  L  SQ ++ RQ+  LE E+G+ LF RHARGLTL+E G
Sbjct: 9   DWSLIQSFLAVAQTGSLSAAARMLGRSQPTLGRQVHALEEELGVSLFDRHARGLTLSEVG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++  +  ++Y  +    +     + +  G +RI  ++ +  +LL   L       P IQ
Sbjct: 69  QQVLPMAQQMYAAVNALSLTAAGQAQQLEGSVRITASVFVSHHLLPPILAAIRRAEPAIQ 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+  +   ++    AD A+R+ +P Q   ++ + +  + +   AA  YL+    P S 
Sbjct: 129 LDLVASDASENLLFREADIAVRMYRPEQ-VDIVAKHIGEVPLCFCAARSYLERAGRPASP 187

Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            EL +H+L+ F   + I   M +  W A+ +         C    +Y  +++    G GI
Sbjct: 188 SELMQHDLVGFDANEEIINAMRNKGWPASRE----SFATRCDNQTTYWELIRA---GCGI 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
                 I + +P +  +  D   P   ++   P+A++ T +++
Sbjct: 241 GFSQLGIAQADPAVEVLEIDAEIPVLPIWLAAPQAMRQTPRIR 283


>gi|330808859|ref|YP_004353321.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376967|gb|AEA68317.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 137/285 (48%), Gaps = 16/285 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT AA  L LSQS++S  +S LE  +G +L  R++R ++ TE G +L 
Sbjct: 13  LMAFIAVAREKSFTRAAAHLGLSQSAVSHAVSSLERNLGTRLLARNSRSVSPTEAGERLL 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 + +++   + L E    P+G +RI  +    ++++   LK+FL  YP I+++L 
Sbjct: 73  ATVGPRFEEIDAELLALSELGESPTGTVRITASDHAIRSIISPKLKKFLPKYPGIKVELF 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            DN  IDI+ D  D  +RL + I    +  R    +   A A   Y  +  EP + ++L 
Sbjct: 133 ADNGLIDIAADRFDAGVRLGEAIAQDMIAVRIGPDMRFTAVATRRYFASSPEPETPEDLM 192

Query: 188 KHNLI-----TFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +HN I     T G L P +  ED   L    R  G+     L  NS    +   + G GI
Sbjct: 193 QHNCINLRLPTHGGLWPWEFGEDGRQLNM--RVDGQ-----LIYNSIYDCLDAAIAGLGI 245

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           A +P+ I +      +L+ +++D       ++  YP   + +G +
Sbjct: 246 AYVPEDIAEPYVKAGHLIPVLKDWCPLWTGLHLYYPSRRQPSGAM 290


>gi|325921049|ref|ZP_08182929.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325548473|gb|EGD19447.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 299

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 134/287 (46%), Gaps = 14/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  VAR GSFT AA QL +SQS++S  +  LET +GI+L  R  R +++TE G++
Sbjct: 7   NDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAGAR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    +++     L E   KP+G +RI T        +   L + L  YPD++I+
Sbjct: 67  LFETVAPRLEEIDDELSALTEFRDKPAGTIRITTAGHAADAYIWPALSKVLPDYPDLKIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    DI  +  D  IRL   +    +         M   A P Y  +   P    +
Sbjct: 127 VTVDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPMQRMAVVAVPSYFVHHTIPAVPAD 186

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +HN I     T G L+P   E       V R  G+        N   +I++  + G G
Sbjct: 187 LAQHNCIGLRLPTHGGLLPWDFEKDGREVKV-RVDGQ-----WTFNGSSAILRAALAGGG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           +A LP+ +V ++     L R+++D   P    Y  YP   +++  LK
Sbjct: 241 LAFLPETMVLEHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSSALK 287


>gi|304410838|ref|ZP_07392455.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307304991|ref|ZP_07584741.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304350735|gb|EFM15136.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306912393|gb|EFN42817.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 313

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 139/296 (46%), Gaps = 15/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L ++++++SR+I+ LE + G +L +R  R L LTE 
Sbjct: 1   MDLNRVQIFAQVVEQGSFTGAAKALGITKATVSRKIAELEADTGTQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   +++   L++ + +L        G L+I   I+LGQ  L     +FL LYPDI
Sbjct: 61  GSSYYNRINKILTDLQSAENQLSAQQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++      + L    LV  H    A+P YL     P  
Sbjct: 121 TIEAELTNRKVDVIEEGIDLLFQIADS-GDTRLQSYALVNAHKSLMASPAYLAEHGTPKV 179

Query: 183 IQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            Q+L KH  I       +   K  +   W+      + EP ++ L VN+     +  + G
Sbjct: 180 PQDLAKHKAIRLQSAHIEGAWKLFDGKTWI------VAEP-MTQLTVNNVTLAREAAIAG 232

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GI  +P  I +   +   L+ +++D       V   YP+      K + F  FI+
Sbjct: 233 LGITAVPSIIAQVALEKGYLIPLLDDYPMVQTKVVLSYPQRAYLPRKYRVFIEFIY 288


>gi|217971427|ref|YP_002356178.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217496562|gb|ACK44755.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 337

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 139/284 (48%), Gaps = 13/284 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS  +  
Sbjct: 11  VFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V   +E+T+ +L      PSG+L+IA  I  G  LL       L  +P I + L+L 
Sbjct: 71  CRKVIAIVESTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAHPQISLNLLLQ 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  IDI  +  D AI +  P+  S+LI R L    M   A+P YL        + ++ KH
Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARHLADWRMLLCASPDYLP-------MHKIFKH 182

Query: 190 --NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L  F  +   C           +   E     + VN+  +++Q  + G G A LP+ 
Sbjct: 183 PAELAAFNRINHPCANSETLTHARSQECFELTSQRITVNNMQALIQLTLDGLGFAALPEP 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            V    ++  LV ++ +    +++VY       K   K+K   N
Sbjct: 243 EVHKYLESGQLVPLLPEWSLNTYSVYSVTSARDKQPAKVKEALN 286


>gi|186473446|ref|YP_001860788.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195778|gb|ACC73742.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 334

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 143/286 (50%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLLHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q  + KP+GKLRI     +G+ L+   L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQSGNKKPNGKLRIDMPGSIGRLLVIPALCEFHTKYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y +    P ++ +L+
Sbjct: 127 LSDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPAYFERAGIPQTLDDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + +       + D+++L    + I     S + VN   + +   + G G+   P +
Sbjct: 186 QHKAVNYFSSRTGRVMDWSFLVE-GKEIEVKMKSVVSVNDADAYVTCGLEGFGLIQPPLF 244

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V     +  LV ++ D+      +   YP +   + K++ F ++I
Sbjct: 245 MVLPHLRSGQLVEVLPDLKPLPMPISAVYPHSRHLSSKVRVFVDWI 290


>gi|107099150|ref|ZP_01363068.1| hypothetical protein PaerPA_01000159 [Pseudomonas aeruginosa PACS2]
          Length = 306

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G +  
Sbjct: 1   MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD+ I+L 
Sbjct: 61  ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+ +L+
Sbjct: 121 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           +H  +   D  P   E   W+   ++  GE  +S      VN    + Q      GIALL
Sbjct: 181 RHVCLRLQD--PAYPE--GWIFADEQ--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 234

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y+      N  L+R++        T+Y  YP            R ++  K R W
Sbjct: 235 PSYVAAAALRNGELLRVLPGHAMHQRTIYALYPS-----------RRYLDAKIRTW 279


>gi|296386647|ref|ZP_06876146.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 306

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G +  
Sbjct: 1   MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD+ I+L 
Sbjct: 61  ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+ +L+
Sbjct: 121 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           +H  +   D  P   E   W+   ++  GE  +S      VN    + Q      GIALL
Sbjct: 181 RHVCLRLQD--PAYPE--GWIFADEQ--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 234

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y+      N  L+R++        T+Y  YP            R ++  K R W
Sbjct: 235 PSYVAAAALRNGELLRVLPGHAMHERTIYALYPS-----------RRYLDAKIRTW 279


>gi|299534162|ref|ZP_07047513.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298717809|gb|EFI58815.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 303

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ L VF  VA   SFT AAEQL L++S +S  +  LE ++G +L  R  R + L+  
Sbjct: 1   MDFNALHVFTRVAELSSFTLAAEQLGLTKSRVSTVVQQLEKQLGTRLLQRTTRHVRLSAD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +    + E+   LE  Q   Q ++    G LRI     L ++++   L EFL  +P +
Sbjct: 61  GEQFLERSKELMADLEQLQAMFQPAASGLRGSLRIDMPNSLARDVVIPKLPEFLSAHPLL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +   ++ +D+  +  DC +R+  P+  + LI R +  + M   A+P YL+    P +
Sbjct: 121 EVGISTSDRRVDVVQEGFDCVVRI-GPLADTDLIARTIGAMEMCNLASPAYLERHGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGI 241
           + +L +H +I + + + +      W     + I   P  S L VN   +    C+ G G+
Sbjct: 180 LADLSRHRIIHYANQLGR--HGAGWEYQRGKEIALHPVRSALVVNGTDAYQTACLAGLGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P    +   D   LV +M D       V   YP       ++ AF N+I
Sbjct: 238 IQAPVRGARHLLDQGLLVEVMRDFRAAPMPVSLLYPHRRHIAPRVTAFLNWI 289


>gi|15598073|ref|NP_251567.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107102426|ref|ZP_01366344.1| hypothetical protein PaerPA_01003488 [Pseudomonas aeruginosa PACS2]
 gi|218890924|ref|YP_002439790.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235864|ref|ZP_04929187.1| hypothetical protein PACG_01807 [Pseudomonas aeruginosa C3719]
 gi|254241542|ref|ZP_04934864.1| hypothetical protein PA2G_02242 [Pseudomonas aeruginosa 2192]
 gi|296388636|ref|ZP_06878111.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|9948967|gb|AAG06265.1|AE004714_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126167795|gb|EAZ53306.1| hypothetical protein PACG_01807 [Pseudomonas aeruginosa C3719]
 gi|126194920|gb|EAZ58983.1| hypothetical protein PA2G_02242 [Pseudomonas aeruginosa 2192]
 gi|218771149|emb|CAW26914.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 297

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 150/296 (50%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA +GSFT AA+ L + ++++S  +  LE ++G +L +R  R + LT  GS 
Sbjct: 5   DSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTHDGSV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +   +E  +    + S + SG+L++     + + L+   L EF   +PDI+++
Sbjct: 65  VLERCRHLLEDMEELESLFHDGS-RASGRLKVDVPSRVARLLIAPALPEFFRQHPDIELE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC +R+ + + +SSL+ R+L  + +   A+P YL+   EP +  +
Sbjct: 124 LGSSDRSVDLVQEGVDCVLRVGQ-LGNSSLVARRLGEMQLINCASPAYLEEHGEPRTPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           LD+H  + +    P       W    D R +     S + VN+  S +  C+ G G+  +
Sbjct: 183 LDRHWAVNYAS--PSSGRVLPWEYREDGRTLTRALRSRVTVNNAESYIACCLSGLGLIQI 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           P Y V+++     L  ++      +   Y  YP     + +++AF +++   L+AR
Sbjct: 241 PAYDVREHLQRGELREVLPQWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLLRAR 296


>gi|218888904|ref|YP_002437768.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254243267|ref|ZP_04936589.1| hypothetical protein PA2G_04075 [Pseudomonas aeruginosa 2192]
 gi|126196645|gb|EAZ60708.1| hypothetical protein PA2G_04075 [Pseudomonas aeruginosa 2192]
 gi|218769127|emb|CAW24887.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 312

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G +  
Sbjct: 7   MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD+ I+L 
Sbjct: 67  ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+ +L+
Sbjct: 127 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           +H  +   D  P   E   W+   ++  GE  +S      VN    + Q      GIALL
Sbjct: 187 RHVCLRLQD--PAYPE--GWIFADEQ--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y+      N  L+R++        T+Y  YP            R ++  K R W
Sbjct: 241 PSYVAAAALRNGELLRVLPGHAMHQRTIYALYPS-----------RRYLDAKIRTW 285


>gi|34499543|ref|NP_903758.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34105393|gb|AAQ61748.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 320

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 143/297 (48%), Gaps = 15/297 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   A +GSF+ AA +L +S ++IS+ I+ LE E+ ++LF R  R LTLTE G + +
Sbjct: 4   LMVFMTTAENGSFSDAARKLGVSPAAISQSIARLEQELEVRLFNRTTRQLTLTEDGRRFY 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + L++   +L+ S  +P+G LR++     G+  +   + EF   YP +++   
Sbjct: 64  AQCRGPVNNLDSAINQLKASRDEPAGHLRVSMPNSFGRRFILPIMGEFCERYPKVRVFFG 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD+   D+  D  D  +R    +  S ++ R L  + ++  A+P Y      P S +EL 
Sbjct: 124 LDDHFSDLIEDGYDVGVRTGM-MPDSRMVARNLAQMPLYVVASPEYWDQHGRPSSPEELS 182

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSGIA 242
            ++ I F    P     F W    DR  GE RI         +N   ++ +   LG G+A
Sbjct: 183 GYDCINF--QFPTSGRLFKW--EFDRK-GE-RIPLEVNGTYTLNDMEAVAELARLGMGVA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP + V     +  L  ++ D+++   ++Y C+P       + + F +F+  K  D
Sbjct: 237 QLPGHEVVHLIRSGELEPVLTDMVSLERSIYICFPHRDHIAPRTRVFVDFVVEKLAD 293


>gi|120597235|ref|YP_961809.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146294586|ref|YP_001185010.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120557328|gb|ABM23255.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
 gi|145566276|gb|ABP77211.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 342

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 147/294 (50%), Gaps = 33/294 (11%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS  +  
Sbjct: 30  VFATIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 89

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V   +++T+ +L      PSG+L+IA  +  G  LL    +  L  +P I + L++ 
Sbjct: 90  CRKVISIVDSTEQKLNNLKGIPSGELKIAAPVGFGGGLLSEPFQYLLATHPQISLNLVMQ 149

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCREPLSIQEL 186
           +  IDI  D  D AI +  P+  S+LI R L    M    +P YL    N + P  +   
Sbjct: 150 DGPIDIVNDGIDLAICI-GPLSDSNLIARHLADWRMLLCTSPDYLPMHHNIKHPSELAAF 208

Query: 187 DK--HNLITFGDLIP-----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           ++  HN  T G+L+      +C E           +   RIS   VN+  +++Q  + G 
Sbjct: 209 NRINHNY-TKGELLTHHPSLECFE-----------LTGQRIS---VNNMQTLIQLTLDGL 253

Query: 240 GIALLP-----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G A LP     DY+  D   LV ++ +    +++VY       +   K+K   N
Sbjct: 254 GYAALPEPEVLDYL--DKGVLVPLLPEWSFNTYSVYSVTSARDRQPAKVKEALN 305


>gi|254501340|ref|ZP_05113491.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222437411|gb|EEE44090.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 319

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 136/290 (46%), Gaps = 15/290 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V    SF    +   L++S+  + ++ LE   G +L  R  R ++LT +G  L+R 
Sbjct: 11  IFMSVIDKNSFVAGGKAFGLTRSTAGKAVARLEDHYGTRLLNRTTRAISLTPEGEDLYRH 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   +E T+  LQ S+  P G LRIA    +G+ LL   ++ +L  +PDIQI++   
Sbjct: 71  GMQIRAAIEETETTLQNSAGTPRGTLRIAAPGAMGRKLLLSTVQRYLRDWPDIQIEISFS 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  ++  D  D A+R+        LI R L+       AAP Y  +   P SI++L   
Sbjct: 131 DRVENVVADNYDLALRIGVTEPDQGLIMRTLLIDRAVLCAAPSYFADRTRPQSIEQLGPL 190

Query: 190 NLITFGDLIPK-----CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LI FG    K       E+  W     R       S L+V++  ++    + G GI LL
Sbjct: 191 DLIYFGTHPEKQCWHLSEEEGVWTRVSGR-------SRLRVDNASALRDAGLAGLGIVLL 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P  +V+D   N  L  ++ +V   S  +   YP+      +++ F + +F
Sbjct: 244 PRLLVEDELANGQLETVLPNVSCGSIPILALYPQRKHLEPRVRKFLDLLF 293


>gi|27365341|ref|NP_760869.1| putative transcriptional regulator, LysR family [Vibrio vulnificus
           CMCP6]
 gi|320155726|ref|YP_004188105.1| cyn operon transcriptional activator [Vibrio vulnificus MO6-24/O]
 gi|27361488|gb|AAO10396.1| putative transcriptional regulator, LysR family [Vibrio vulnificus
           CMCP6]
 gi|319931038|gb|ADV85902.1| cyn operon transcriptional activator [Vibrio vulnificus MO6-24/O]
          Length = 291

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE G +
Sbjct: 4   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDAVNLRLLNRHARKLSLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R  S +  +L  T  E+ +     SGK++I+T  +L + ++   L  F+  YP+I I+
Sbjct: 64  FFRECSPLLQRLTNTAEEITDECRGASGKIKISTPYNLTKRMMMPMLNGFMSQYPEINIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  ++    +     D   R+  P + SSLI RK+ ++     A+P Y+     P   ++
Sbjct: 124 LTTESNADQLDPTEWDVIFRV-GPQRDSSLIARKIGSVKDILVASPEYVNAHPMPTHAED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+    L+   + +      V+   G       Q N+   +   C  G GI L+P
Sbjct: 183 LHDHFLLKGHPLLKWTLINSKGETVVNVDRGR-----FQANALNVVRSACSEGLGITLMP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++K+   + +LVRI+ D       +Y  Y        K++ F +++ 
Sbjct: 238 DVMIKEYIADGSLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDYVI 286


>gi|330810041|ref|YP_004354503.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378149|gb|AEA69499.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 307

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 135/297 (45%), Gaps = 12/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A +GSFT AA+   ++ +++SR I  LE  +G +LF R  R + LTE G    
Sbjct: 13  IELFCLAAEAGSFTAAAQLAGVTPAAVSRSIFRLEERLGSRLFVRTTRSIRLTEAGKTYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   Q E+  +   PSG+LRI+     G + +   L  F  LYP + + L 
Sbjct: 73  EQCRQALTQLVEAQQEMMGAQSVPSGQLRISLPTTYGHHRILPLLPAFRALYPQVSVDLH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID   +  D AIR+R     SS+I R L    +   A+P YL+    P  +++LD
Sbjct: 133 LSNRNIDFVAEGYDLAIRVRAQ-PDSSMIARLLEDAKLVVVASPDYLRKVGTPQVLEDLD 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I F   +P      +WL  V+       GE    C   +  L  +     G+G+  
Sbjct: 192 EHECIQFE--LPSSGRRISWLFNVEGKEKEVFGEGGYCC--SDDVLGGVTLAKHGAGLFQ 247

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              +IV+    N  LV ++      S      YP       +++AF +F+      W
Sbjct: 248 TYKFIVEQELANGQLVEVLAPFAGRSRPFTLLYPHGRYVPQRVRAFVDFLLQYREQW 304


>gi|238755698|ref|ZP_04617032.1| Transcriptional regulator [Yersinia ruckeri ATCC 29473]
 gi|238706065|gb|EEP98448.1| Transcriptional regulator [Yersinia ruckeri ATCC 29473]
          Length = 306

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 141/278 (50%), Gaps = 16/278 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F ++   GSF+ AAE   ++ S +S++I  LE  +G +L YR  R L LTE G  
Sbjct: 9   NDLILFALIVDCGSFSKAAEAAGMTSSVVSKRIGRLEKSLGARLLYRTTRSLRLTENGEV 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+R   E+   ++     + E S + +G +R++     G+ LL   + EF   +P+++I+
Sbjct: 69  LYRHAREISANIQAALYAVSERSDELTGAIRMSVPTISGELLLSECVAEFCAQHPNLKIE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+  +  D AIR    +  SSLI R ++        +P YL+   EP S ++
Sbjct: 129 MRLENRFVDLVNEGIDLAIRT-GTMPDSSLIARPILDSRWVIVCSPGYLEQQPEPTSAKD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L  HN +T+     +     NWL  + +P G   I  LQVN  LS      I +  + G 
Sbjct: 188 LLNHNCLTY---TYQESGTANWL--MKQP-GSNEIYELQVNGNLSVNNARAIRKAVISGH 241

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA++P  +V +   +  LV I+    +    VY  YP
Sbjct: 242 GIAMVPRCMVYEDIQDGKLVEILAGHCSKVLGVYAVYP 279


>gi|254505376|ref|ZP_05117523.1| transcriptional regulator [Vibrio parahaemolyticus 16]
 gi|219551493|gb|EED28471.1| transcriptional regulator [Vibrio parahaemolyticus 16]
          Length = 304

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 120/243 (49%), Gaps = 6/243 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  SGSF+ AA  L ++ SS++R I  LE ++   LF R  R L LT++G   H
Sbjct: 5   IRVFNQVVESGSFSQAANALSMAPSSVARNIDNLEAKLQTTLFKRSTRQLVLTDEGRYFH 64

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +    ++++S  +P G LRI+     G   L   +  FL  YP +QI+L 
Sbjct: 65  HQALSLVEEADALVNQMKQSPSQPQGLLRISAFESFGNVFLAPLIPRFLAQYPKVQIELE 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN  +D++ D  D AIR+  P + S L  RKL+T      A+P YLK         +L 
Sbjct: 125 LDNHVVDLNSDNIDLAIRIGTP-KDSRLKARKLLTNRTVLVASPQYLKANPAITEPNDLS 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            HN +       KC    +W  + +    + +++          I+Q  + GSG+ LL D
Sbjct: 184 GHNCLLISQQRQKC----HWYFSRENERHKVQVTGNFSSRGGSPILQGALHGSGVLLLSD 239

Query: 247 YIV 249
           ++V
Sbjct: 240 WMV 242


>gi|194291696|ref|YP_002007603.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225600|emb|CAQ71546.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 311

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 138/290 (47%), Gaps = 15/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF  AAE + L +++++R I  LET +G+KL +R  R +++T  G+  +
Sbjct: 7   MQAFTRVVDVGSFARAAESMDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTNDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  L   +  P G L + TT  L Q +L  +L EF   YPD++++L 
Sbjct: 67  ERCVRILADVEEAEQSLTRQNNSPRGTLSVDTTAGLAQLVLVPHLHEFFQAYPDLKLELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++ K ID+  +  D  +R+  P+   +++ R++  + +  YA+P YL     P  + EL 
Sbjct: 127 INGKPIDLLQEGVDVVLRVGIPL-DEAMVARRIGHVQLAFYASPIYLNRNGTPRDLTELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVL-GSGIA 242
           +H  + F  L  +   +  W        GE      IS    + YL     C L G GIA
Sbjct: 186 QHKAVNF--LSNRTGREMPWPLARGTERGEVLLPSAISTNDADVYLG----CALEGHGIA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +   + +    +  LV I+ D  T    +   YP+    + K++ F N+
Sbjct: 240 RISRAMAEPYVASGRLVEILADWQTDELPISAMYPQNRHLSAKVRVFVNW 289


>gi|221197010|ref|ZP_03570057.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203683|ref|ZP_03576701.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175849|gb|EEE08278.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183564|gb|EEE15964.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 317

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 6/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F +     S T AA +L LS+S IS++IS LE  +G++L  R  R +  TE G  
Sbjct: 4   DDIHAFLLAVEQQSITEAARRLGLSKSVISKRISDLERLLGVQLLMRSTRNVVPTEAGQI 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   SE   +L     ++ E S    G+LRI + + L +  L   + +F   +P +++ 
Sbjct: 64  FYEAASESMRRLLEVAEDVAERSHGLCGELRITSPVSLTRLWLGPAIAKFAAAHPHLRVT 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D++ ++I  +  D AIR  + +  S+LI R++ +       +P Y     EP SI++
Sbjct: 124 VETDDRVVNIETERFDVAIRAAR-LPDSTLIARRIGSCARVVVCSPDYRAQYGEPHSIEQ 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  + +    P     F       +P +  PR S    N+  ++    V G GIA+L
Sbjct: 183 LVGHRCLNYSTAAPSVTWSFRASGATGKPRVVSPR-SVFLSNNGETLRDAAVEGIGIAML 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P YI  +   +  LVR++         VY  YP +   + KLK F
Sbjct: 242 PIYIADEALRDGRLVRVLAHEAPQDEVVYAVYPRSPFTSNKLKQF 286


>gi|146340929|ref|YP_001205977.1| OprD regulatory protein [Bradyrhizobium sp. ORS278]
 gi|146193735|emb|CAL77752.1| putative transcriptional regulatory protein, LysR family; putative
           OprD regulatory protein [Bradyrhizobium sp. ORS278]
          Length = 297

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 123/267 (46%), Gaps = 7/267 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VAR GSFT AA +L +SQS++S  +  LE  +G++L  R  R +  T  G +L R  
Sbjct: 12  FLAVAREGSFTRAAARLGISQSALSHSLRNLEARLGVRLLARTTRSVAPTAAGERLLRSI 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              + ++ET    L E   KP+G +RI        ++L   L++ L +YPDI+++++ D 
Sbjct: 72  GPRFDEIETELAGLSELRDKPAGTIRITAGEHAADSVLWPALRKLLPVYPDIKVEVVTDY 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              DI  +  D  +RL + +    +  R    + M    +P Y      P   Q+L +HN
Sbjct: 132 GLTDIVAERFDAGVRLGEQVAKDMIAVRIGPDLRMAVVGSPAYFAVRARPRRPQDLTEHN 191

Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            I     +P     + W      R +       L  N+    M     G G+A LP+  V
Sbjct: 192 CINI--RLPTLGGIYAWEFEKRGRTLKVRVDGQLVFNNITMRMNAVRAGLGLAYLPEDQV 249

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCY 273
           +D+     LVR++ED   P F  Y  Y
Sbjct: 250 RDDLAKGKLVRVLEDWCAP-FAGYHLY 275


>gi|170699349|ref|ZP_02890396.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135721|gb|EDT04002.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 330

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 149/300 (49%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE G +
Sbjct: 31  DDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRMTVTEAGER 90

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + ++
Sbjct: 91  VFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPTLLDFSARYPQLNVR 150

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  +R+   I +  LI R+L T H    A+P YL     P ++ +
Sbjct: 151 LDLFDRLVDVAGEGYDLDVRIGDEI-ADHLIARRLATNHRVLCASPDYLARRGTPRTLAD 209

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233
           L  H+ +   +               D P G  R+      + ++V   LS       +Q
Sbjct: 210 LASHDCLAIKER--------------DHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQ 255

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + G GI L   +      +   L R++ D I P+  ++  YPE +  + K++   +F+
Sbjct: 256 WALAGRGIVLRSIWEAAPLIERGELCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFL 314


>gi|315269548|gb|ADT96401.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 337

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 13/284 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS  +  
Sbjct: 11  VFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V   +E T+ +L      PSG+L+IA  I  G  LL       L  +P I + L+L 
Sbjct: 71  CRKVIAIVENTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAHPQISLNLLLQ 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  IDI  +  D AI +  P+  S+LI R L    M   A+P YL        + ++ KH
Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARHLADWRMLLCASPDYLP-------MHKIFKH 182

Query: 190 --NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L  F  +   C           +   E     + VN+  +++Q  + G G A LP+ 
Sbjct: 183 PAELAAFNRINHPCANSETLTHARSQECFELTSQRITVNNMQALIQLTLDGLGFAALPEP 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            V    ++  LV ++ +    +++VY       K   K+K   N
Sbjct: 243 EVHKYLESGQLVTLLPEWSLNTYSVYSVTSARDKQPAKVKEALN 286


>gi|37522120|ref|NP_925497.1| LysR family transcriptional regulator [Gloeobacter violaceus PCC
           7421]
 gi|35213120|dbj|BAC90492.1| LysR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 316

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 139/286 (48%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F     +GSF+  A ++  +Q ++S+QI+ LE  +G +L  R  R L  TE+G + +
Sbjct: 7   MRSFVRAVETGSFSAVAREMATTQPTVSKQIAALEEHLGARLLVRSTRRLGPTEEGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    V   +E  +  ++ S+ +P G+LR++  +  GQ  +   +KEFL  YPDI++ L 
Sbjct: 67  RQCRRVLEAIEEAEASVR-SAERPFGRLRVSCPVAFGQYRIVPRVKEFLDRYPDIELDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+    A+ AIR+   ++ SSL+  ++ T       +  Y     EP ++++L 
Sbjct: 126 MTDGFVDLIEAGAELAIRI-GLLEDSSLVAHRIGTTRRVTVGSAAYFAGAGEPRTLEDLT 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN + +  L       F    +   P+        Q N+  +I +  + G G+A+ P +
Sbjct: 185 RHNCLVYTHLATGNTWSFE---SQSGPVQVKVRGNFQCNNSAAIREAVLAGLGVAVSPVW 241

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     D   L  ++ D   P   ++  Y +      +++ F +F+
Sbjct: 242 LFGEDLDRGVLQVVLHDFQPPPLPIHAVYLKDRYQPARVRCFVDFL 287


>gi|126172731|ref|YP_001048880.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|153002350|ref|YP_001368031.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|160877074|ref|YP_001556390.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|217974937|ref|YP_002359688.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|125995936|gb|ABN60011.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
 gi|151366968|gb|ABS09968.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
 gi|160862596|gb|ABX51130.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|217500072|gb|ACK48265.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
 gi|315269278|gb|ADT96131.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 314

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 139/296 (46%), Gaps = 15/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L ++++++SR+I+ LE + G +L +R  R L LTE 
Sbjct: 2   MDLNRVQIFAQVVEQGSFTGAAKALGITKATVSRKIAELEADTGTQLLFRTTRALKLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   +++   L++ + +L        G L+I   I+LGQ  L     +FL LYPDI
Sbjct: 62  GSSYYNRINKILTDLQSAENQLSAQQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++      + L    LV  H    A+P YL     P  
Sbjct: 122 TIEAELTNRKVDVIEEGIDLLFQIADS-GDTRLQSYALVNAHKSLMASPAYLAEHGTPKV 180

Query: 183 IQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            Q+L KH  I       +   K  +   W+      + EP ++ L VN+     +  + G
Sbjct: 181 PQDLAKHKAIRLQSAHIEGAWKLFDGKTWI------VAEP-MTQLTVNNVTLAREAAIAG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GI  +P  I +   +   L+ +++D       V   YP+      K + F  FI+
Sbjct: 234 LGITAVPSIIAQVALEKGYLIPLLDDYPMVQTKVVLSYPQRAYLPRKYRVFIEFIY 289


>gi|187924230|ref|YP_001895872.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715424|gb|ACD16648.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 309

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 140/303 (46%), Gaps = 20/303 (6%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +   GSF  A E L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERMLNGMGVLTAIVDCGSFAAAGEALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +     +   LE       + +    G+LR+       + +L   L  F+ 
Sbjct: 61  TLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFID 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+Q++LI  ++  D+  D  D AIR   P   S+LI RKL+   +   AAP YLK  
Sbjct: 121 KHPDLQLELITRDQLGDLVGDGFDLAIRFGDP-PVSTLIARKLLDTRILTVAAPSYLKKH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLS 230
             P +  EL+  KH  I F D  P     F+W    +   G  +IS      L VN   +
Sbjct: 180 GHPTTPAELENGKHVCIKFRD--PLTGYPFSW----EFHRGRKKISIAPQGRLTVNDVGT 233

Query: 231 IMQYCVLGSGIAL---LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +   C  G G+A    L    +  +  LV +  D     + +Y  YP       K++AF 
Sbjct: 234 LHSVCTAGQGVAQILSLGTESLMASGKLVELFPDWGDEVYPLYALYPSRHHPPAKVRAFY 293

Query: 288 NFI 290
           +FI
Sbjct: 294 DFI 296


>gi|114763061|ref|ZP_01442491.1| transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114544385|gb|EAU47393.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           HTCC2601]
          Length = 300

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 142/296 (47%), Gaps = 16/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L++F   A  GSF  A  +L +S +S++R I+ LE  + ++LF R  R   LT  
Sbjct: 1   MDSTELKIFIATAEEGSFAGAGRKLQISPASVTRAIAALEARLEVRLFTRTTRQCRLTLD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +     + +  +LE  + E++   + P+G LR+A  +  G+  +   +  F   YP I
Sbjct: 61  GERFLERCAPLVSELEDAEDEIRTGRLGPNGALRVAAPLSFGRRQIAPLVTAFRRKYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL L ++  D+     DCA+R+ +P +    I R+L+       AAP YL+N   P  
Sbjct: 121 SVQLTLSDESDDLLWREYDCALRVGRPTK-GEFITRRLLKARRVVCAAPLYLENRAAPQV 179

Query: 183 IQELDKHN---LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +L +H    LI  G L+ + M + +    V R +  P  + L  NS      + + G 
Sbjct: 180 PDDLAEHRGIVLIRDGQLLDQWMFEID---GVMRSVSVP--ATLASNSGEVTQSWALHGE 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFI 290
           G+ L   + V+++    R+ME  + P ++V     +  YP       + ++F +F+
Sbjct: 235 GVVLKSIWDVQEDLAEGRLME--LLPDYSVDNADIFLVYPARRYVPSRTRSFIDFL 288


>gi|330821241|ref|YP_004350103.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327373236|gb|AEA64591.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 301

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 140/299 (46%), Gaps = 13/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  +  SGS T AAEQL  + S +SR ++ LE ++G+ L  R  R   LT
Sbjct: 1   MKTSTEELQTFVAIIDSGSITAAAEQLGQTVSGVSRALNRLERKLGVTLLRRTTRSSQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L     ++   +E  +  +    VKP+G+LR+        + +  NL  F   YP
Sbjct: 61  DEGELLLTRARDILQSVEEAETAVSLGRVKPAGRLRVDAATPFMLHAIVPNLPAFTARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ++L  + + +D+     D AIR+   +  S+L  R L    +H  A+P YL     P
Sbjct: 121 DIQLELTNNERFVDLIEQRIDIAIRI-GTLPDSTLHARALGACPLHILASPAYLAEHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
            S+ +L +H L+ F D+               +P GE   I      S    +++  LG 
Sbjct: 180 RSVADLKRHKLLGFSDIETLNRWPLRRRGAGGQPDGEGLVIEPAHTASSGETLRHLALGG 239

Query: 240 -GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  L D++   +       P L  +M D   P   VY+ +  AL  TG+++ F +F+
Sbjct: 240 LGIVCLSDFMSAADIAAGRLVPLLGELMSDYRQPINAVYYRH-AAL--TGRVQGFLDFL 295


>gi|17988168|ref|NP_540802.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. 16M]
 gi|23500975|ref|NP_697102.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|161618049|ref|YP_001591936.1| transcriptional regulatory protein [Brucella canis ATCC 23365]
 gi|254700873|ref|ZP_05162701.1| transcriptional regulatory protein [Brucella suis bv. 5 str. 513]
 gi|254705239|ref|ZP_05167067.1| transcriptional regulatory protein [Brucella suis bv. 3 str. 686]
 gi|256045849|ref|ZP_05448724.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060201|ref|ZP_05450379.1| transcriptional regulatory protein [Brucella neotomae 5K33]
 gi|256368526|ref|YP_003106032.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260563139|ref|ZP_05833625.1| bacterial regulatory protein LysR [Brucella melitensis bv. 1 str.
           16M]
 gi|260567294|ref|ZP_05837764.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40]
 gi|261324177|ref|ZP_05963374.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261751385|ref|ZP_05995094.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261755949|ref|ZP_05999658.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|265992265|ref|ZP_06104822.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|294851465|ref|ZP_06792138.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|17983928|gb|AAL53066.1| transcriptional regulatory protein, lysr family [Brucella
           melitensis bv. 1 str. 16M]
 gi|23346833|gb|AAN29017.1| transcriptional regulator, LysR family [Brucella suis 1330]
 gi|161334860|gb|ABX61165.1| transcriptional regulatory protein [Brucella canis ATCC 23365]
 gi|255998684|gb|ACU47083.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260153155|gb|EEW88247.1| bacterial regulatory protein LysR [Brucella melitensis bv. 1 str.
           16M]
 gi|260156812|gb|EEW91892.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40]
 gi|261300157|gb|EEY03654.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261741138|gb|EEY29064.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261745702|gb|EEY33628.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|263003331|gb|EEZ15624.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|294820054|gb|EFG37053.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
          Length = 297

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G +L 
Sbjct: 9   LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI I+L 
Sbjct: 69  AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   Q+L 
Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+ I     +P   E F W  T  R   + RI+    L   S   ++Q C+ G G+A L
Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P DY  +  ++  LV ++ D        +  YP   ++   L A 
Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289


>gi|254246719|ref|ZP_04940040.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124871495|gb|EAY63211.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 294

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 136/286 (47%), Gaps = 11/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G   +  
Sbjct: 9   AFVRTAEALSFVAAGRALGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTDEGRHFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +       +  +  S+ +P GKLR++  + +G   L   L EF   YPD+++ L  +
Sbjct: 69  CQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + +EL+ H
Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTPRELEAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALLPDY 247
           + + +    P   +  +W    D   G+P    + +  N+  ++    + G GI  +PD+
Sbjct: 187 DCVRY--CFPTTGKLQDWALAADD--GKPLTLRTAMTCNNMEALRGAVLAGLGIGYMPDF 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +D   +  LV +++D           +P + + + KL+ F +F+
Sbjct: 243 LARDALEHGTLVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288


>gi|49085138|gb|AAT51255.1| PA0159 [synthetic construct]
          Length = 313

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G +  
Sbjct: 7   MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD+ I+L 
Sbjct: 67  ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+ +L+
Sbjct: 127 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           +H  +   D  P   E   W+   ++  GE  +S      VN    + Q      GIALL
Sbjct: 187 RHVCLRLQD--PAYPE--GWIFADEQ--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y+      N  L+R++        T+Y  YP            R ++  K R W
Sbjct: 241 PGYVAAAALRNGELLRVLPGHAMHQRTIYALYPS-----------RRYLDAKIRTW 285


>gi|330821834|ref|YP_004350696.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373829|gb|AEA65184.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 307

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 135/290 (46%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  V  +GSF   A  L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVVETGSFAKTANLLGISQPTVSKAIARLEQRLGTMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L     ++    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAVQLLADAEMIENEASAQALEPHGTVRLNAPMSFGLRHLSPLLPAFLERYPGVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L ++ IDI     D AIR+   +  SSL  R+L  +H    A+P YL+    P   
Sbjct: 126 VDLVLTDQIIDIVSSGCDVAIRIAD-LSDSSLRARRLCAVHRPLVASPEYLERHGRPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++LD+H  + + +L       F  + + D+    P    ++ N+   I+   + G G+AL
Sbjct: 185 RDLDRHVSMIYTNLPSPDYWRFRHVDS-DQEFAVPVRGRMRTNNADVILPALLAGQGLAL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++V D   +  L R+M D       V    P  +    ++    +F+
Sbjct: 244 QPEFLVWDALKSGALERVMCDWRIADINVNLVTPPGMLRAARVTVLLDFL 293


>gi|160877344|ref|YP_001556660.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160862866|gb|ABX51400.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
          Length = 333

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 13/284 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS  +  
Sbjct: 7   VFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 66

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V   +E T+ +L      PSG+L+IA  I  G  LL       L  +P I + L+L 
Sbjct: 67  CRKVIAIVENTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAHPQISLNLLLQ 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  IDI  +  D AI +  P+  S+LI R L    M   A+P YL        + ++ KH
Sbjct: 127 DGPIDIVNEGIDLAICI-GPLSDSNLIARHLADWRMLLCASPDYLP-------MHKIFKH 178

Query: 190 --NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L  F  +   C           +   E     + VN+  +++Q  + G G A LP+ 
Sbjct: 179 PAELAAFNRINHPCANSETLTHARSQECFELTSQRITVNNMQALIQLTLDGLGFAALPEP 238

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            V    ++  LV ++ +    +++VY       K   K+K   N
Sbjct: 239 EVHKYLESGQLVTLLPEWSLNTYSVYSVTSARDKQPAKVKEALN 282


>gi|157372088|ref|YP_001480077.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323852|gb|ABV42949.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 306

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 144/278 (51%), Gaps = 16/278 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F ++   GSF+ AAE   ++ S +S++I  LE  +G +L YR  R LTLTE G  
Sbjct: 9   NDLILFALIVDCGSFSKAAETAGITSSVVSKRIGRLEKSLGARLLYRTTRSLTLTENGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+R   E+  K +     + E S + +G +R++     G+ LL  ++ EF  L+P+++++
Sbjct: 69  LYRQAKEISAKTQEALNVISEHSDELTGIIRMSVPTISGELLLSESVAEFCALHPNLKVE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+  D+  +  D AIR    +  SSLI R ++        +P YL+   EP S  +
Sbjct: 129 MRLENRFADLVNEGIDLAIR-TGTLPDSSLIARPILNSRWVIVCSPSYLQQYSEPQSAGD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L +HN +T+     +   D NWL  + +P G  +I  LQV+  LS      I +  + G 
Sbjct: 188 LLEHNCLTY--TYQESGTD-NWL--MKQP-GSNKIYELQVSGNLSANNARAIRKAVIAGY 241

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           GIA++P  +V ++     +V ++         +Y  YP
Sbjct: 242 GIAMVPRCMVYEDLQEGAMVEVLSGHCGKVLGIYAVYP 279


>gi|221211513|ref|ZP_03584492.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168874|gb|EEE01342.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 300

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 140/307 (45%), Gaps = 29/307 (9%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD      + V   V  +GSF  A E + L+Q ++SR ++ LE  +GI++F R AR +
Sbjct: 1   MRFDSRLLSGIGVLSAVIEAGSFARAGEAIGLTQPAVSRAVARLEERIGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++   +  K  G+LR+      G  +L   L  FL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEDAALDAGRAKEKVRGRLRVNVDGTFGHYVLAPKLAAFLE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+P Y+   
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGVP-EPSSYRARLLLETRVLTCASPAYVARH 179

Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW----------LATVDRPIGEPRISCLQVN 226
            EP   +EL D H  +   D  P     F W           A   R         L VN
Sbjct: 180 GEPRHPRELADGHRCVLIRD--PVTGRPFEWEFHRGGEVVPFAAAGR---------LMVN 228

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
              S++  C+ G+G+A L +   +D      L  ++ D    +F +Y  Y  +   + K+
Sbjct: 229 DTGSLLGACLGGAGVAQLLELYARDIVSEGRLTLLLPDWTDETFPLYAYYHASNLVSAKV 288

Query: 284 KAFRNFI 290
           + F +F+
Sbjct: 289 RVFLDFV 295


>gi|167578918|ref|ZP_02371792.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 334

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLR+     +G+ ++  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQSNNRKPHGKLRVDMPGSIGRLIVIPSLCEFHSRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP +I+ L 
Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFEGTTVASPAYLEKYGEPQTIEALA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +     +      W   +D    E +++ L  VN   + +   + G G+   P 
Sbjct: 186 QHKAVNY--FSSRTGRTIEWAFLIDGKEVEVKMNGLVSVNDADAYVTCGIEGFGLIQPPL 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V     N  L  ++         +   YP +   + K++ F +++
Sbjct: 244 FMVLPHLRNGTLKEVLPGYKPLPMPISVVYPHSRHLSPKVRVFVDWV 290


>gi|221199169|ref|ZP_03572213.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206634|ref|ZP_03579646.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221173289|gb|EEE05724.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180454|gb|EEE12857.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 294

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 140/286 (48%), Gaps = 11/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGISASAVGKRIARLEARLNVRLFHRSTRSVTLTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              V  +++  + EL +S   P G+LR++  TI     L+   L  F+  YP+I++ L  
Sbjct: 69  CRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIG---TLMLPVLAGFMSAYPEIELDLDF 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  +  D  +R  +P   S L  R L     H  A+P YL+    P +  +L +
Sbjct: 126 SDRLVDVVDEGFDAVVRTGRP-ADSRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLAR 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  + +    P   +   W   V R    P +    V N+  + + + + G GIA LP++
Sbjct: 185 HRCLHY--RFPATGKLEIWPLPVPRSHTPPDVPVSMVSNNAETRLCFALRGLGIACLPEF 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+   D   L  +++D +     VY  +P     T KL+AF +++
Sbjct: 243 FVREPIDAGTLRTVLDDYVASRTPVYVLWPSGRHPTPKLRAFVDYL 288


>gi|163842336|ref|YP_001626740.1| LysR family transcriptional regulator [Brucella suis ATCC 23445]
 gi|163673059|gb|ABY37170.1| transcriptional regulator, LysR family [Brucella suis ATCC 23445]
          Length = 297

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G +L 
Sbjct: 9   LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI I+L 
Sbjct: 69  AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   Q+L 
Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+ I     +P   E F W  T  R   + RI+    L   S   ++Q C+ G G+A L
Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLTGFGLAYL 244

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P DY  +  ++  LV ++ D        +  YP   ++   L A 
Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289


>gi|308050159|ref|YP_003913725.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632349|gb|ADN76651.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 303

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 141/287 (49%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V +SGSF+ AA +L  SQ+S+S++++ LE E+G+KL  R +R   LT +G+  +
Sbjct: 7   MRVFVRVVQSGSFSAAARELLTSQASVSKKVATLEAELGVKLLRRTSRDHALTPEGADYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +L+  +  ++   V+P G LRI       + +L   + EFL  YPDIQ+  +
Sbjct: 67  HHCVNWLAELDEVEGRIRAQGVQPKGNLRITAPYPFARQILAPVMTEFLERYPDIQLDFL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  D+  +  D AIR    ++ SSLI R L    M   A+P YL     P +   L 
Sbjct: 127 VSDRRSDLQAEGIDIAIRAGH-LEDSSLIVRHLFDNPMLLVASPDYLSRQGVPETPDALS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I +  +       F +   T+  P+  P     Q +S    ++  + G GI  LP 
Sbjct: 186 QHQCIVYSPVRAVHSWRFQYQGNTIVVPVRGP----FQSDSGDMNLEAAIAGMGITELPV 241

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V+    +  LV+++      +      YP++     K++ F +F+
Sbjct: 242 WMVEQALSDGRLVQVLASYQADNVPFNALYPQSRHVPLKVRCFIDFL 288


>gi|37680602|ref|NP_935211.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37199350|dbj|BAC95182.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 295

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE G +
Sbjct: 8   DDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDAVNLRLLNRHARKLSLTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R  S +  +L  T  E+ +     SGK++I+T  +L + ++   L  F+  YP+I I+
Sbjct: 68  FFRECSPLLQRLTNTAEEITDECRGASGKIKISTPYNLTKRMMMPMLNGFMSQYPEINIE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  ++    +     D   R+  P + SSLI RK+ ++     A+P Y+     P   ++
Sbjct: 128 LTTESNADQLDPTEWDVIFRV-GPQRDSSLIARKIGSVKDILVASPEYVNAHPMPTHAED 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+    L+   + +      V+   G       Q N+   +   C  G GI L+P
Sbjct: 187 LHDHFLLKGHPLLKWTLINSKGETVVNVDRGR-----FQANALNVVRSACSEGLGITLMP 241

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++K+   + +LVRI+ D       +Y  Y        K++ F +++ 
Sbjct: 242 DVMIKEYIADGSLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDYVI 290


>gi|15595357|ref|NP_248849.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9945991|gb|AAG03549.1|AE004454_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 312

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 23/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G +  
Sbjct: 7   MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD+ I+L 
Sbjct: 67  ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+ +L+
Sbjct: 127 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           +H  +   D  P   E   W+   ++  GE  +S      VN    + Q      GIALL
Sbjct: 187 RHVCLRLQD--PAYPE--GWIFADEQ--GERTVSPQNTFMVNVAEVMAQAAKADLGIALL 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y+      N  L+R++        T+Y  YP            R ++  K R W
Sbjct: 241 PSYVAAAALRNGELLRVLPGHAMHQRTIYALYPS-----------RRYLDAKIRTW 285


>gi|167622645|ref|YP_001672939.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352667|gb|ABZ75280.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 303

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 147/294 (50%), Gaps = 17/294 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA ++ + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +  S +  ++E  +  ++ +    SG LRIA  +   Q L+      FL LYP+++
Sbjct: 63  ALFFQHCSSISDEIEAAKATVENTHNDVSGLLRIAIPVSFSQELIATLCSGFLRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDSDVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKIHGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           Q+L +H+ I  G      + P        +    R +        +VNS + + Q+ +  
Sbjct: 182 QDLAEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV--------RVNSAVMVKQFVMDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GIA+L + + K+   + +LV ++++    +F VY  Y    +    + AF +F
Sbjct: 234 FGIAMLSNSVCKNELASGSLVPLLQEWPMEAFKVYGVYSSRRQLATNISAFLDF 287


>gi|212710920|ref|ZP_03319048.1| hypothetical protein PROVALCAL_01989 [Providencia alcalifaciens DSM
           30120]
 gi|212686617|gb|EEB46145.1| hypothetical protein PROVALCAL_01989 [Providencia alcalifaciens DSM
           30120]
          Length = 318

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  L +F  +   GS T AA+ LH+++S+IS+++  LE   GI+L  R  R L LTE G
Sbjct: 5   DYALLPIFIAIVEQGSLTKAADSLHMTKSAISKKLMALEASTGIRLITRSTRHLQLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    + +  ++     L   S    G L+I+     G   L   L EFL  +P + 
Sbjct: 65  ELYYAYLKKAHRAIDDGNAALSRYSGAVDGTLKISAPTVFGHLHLTALLPEFLKCWPQLN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +L+ D+K +D+  +  D AIR+ + ++ SSL+ R L   H    A+P +L+    P ++
Sbjct: 125 AELVFDDKLVDLVGEGFDMAIRIGE-LKDSSLVSRTLSPCHSVLCASPIWLEEHGSPQNL 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            EL  HN + +          F     + R  P G  R      N+ L++ Q  + G G+
Sbjct: 184 DELAGHNCLLYSYYQAGQTWLFTHQGKMVRFTPTGNFR-----ANNSLALHQAALQGLGV 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP +I   +     L+ ++ +   P   +Y  YP       K+ AF +F+
Sbjct: 239 CQLPQFIAAPDILAGRLITVLPEYHLPQHHIYAVYPNREFLPKKVSAFLDFL 290


>gi|171316742|ref|ZP_02905954.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171098092|gb|EDT42907.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 300

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 144/298 (48%), Gaps = 11/298 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD      + V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++   S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEEAAVDAGRSRARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P++ +++ + ++  D+  D  D A+R   P + SS   R L+  H+   A+  Y+   
Sbjct: 121 RFPELSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETHVLTCASAAYVARH 179

Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYC 235
            EP   ++L D H  +   D  P     + W     D  +       L VN   +++  C
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYGWEFHRGDEVVPFDAAGRLTVNDTGALLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V G G+A L +   +D   +  LV+++ +    +F +Y  +  +   + K++ F +F+
Sbjct: 238 VGGEGVAQLLELYARDILADGRLVQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFV 295


>gi|226946789|ref|YP_002801862.1| transcription regulator pirR [Azotobacter vinelandii DJ]
 gi|226721716|gb|ACO80887.1| transcription regulator pirR [Azotobacter vinelandii DJ]
          Length = 293

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 24/297 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS- 64
           + +R+F  V   GSFT AAE L LS+  +SR++ GLE  +G +L  R  R L +T  G+ 
Sbjct: 5   EDMRLFVAVVDGGSFTAAAEALGLSKQFVSRRLMGLEARLGARLLNRSTRRLAVTPLGAL 64

Query: 65  ---KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +  R+  +V    E  Q  LQ+ +  P G LR++  +  G   L   L  FL  YP+
Sbjct: 65  YCERARRILDDVA---EAEQAILQQRAT-PRGTLRLSAPMSFGTLHLGRLLPGFLERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ +D+  +  D A+R+ + +  S+LI R L  + M   A+P YL+    P 
Sbjct: 121 VAVELELSDRRVDLLEEGYDMAVRIGE-LADSTLIARALAPLRMVTCASPAYLQRRGAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISC---LQVNSYLSIMQYCVL 237
           + + L +H+ + +G       +   W    D   G P R+      +VN+   +    + 
Sbjct: 180 TPEALREHDCLLYGH-----GKLVVWTYWRD---GRPERVEVRGRYRVNNGELVRDAALA 231

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+A LP +IV        L+ ++E    P   VY  YP+  + +  ++AF ++++
Sbjct: 232 GLGLAWLPTFIVGPELTAGTLLPVLEAFQGPPAKVYAVYPQHRQTSALIRAFTDYLY 288


>gi|326386032|ref|ZP_08207656.1| transcriptional regulator, LysR family [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209257|gb|EGD60050.1| transcriptional regulator, LysR family [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 310

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 128/284 (45%), Gaps = 24/284 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D+LR F  VAR  SFT AA QL +SQ  +SR I+ LE  +G++L  R  R +  T  G
Sbjct: 5   DHDQLRAFLAVARERSFTRAAAQLGMSQPVLSRTIAALEARLGVRLLNRTTRSVAPTLAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  +  +      L ES  +P+G +R+    D  + ++   L   L  YPDI+
Sbjct: 65  ERLACGIAPHFEAIAGELAALSESFTRPAGLVRLTADEDAAEQVVWPRLARILPAYPDIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH------MHAYAAPHYLKNC 177
           +++++DN   DI     D  IR      S  +I+R ++ +       M   AAP Y+   
Sbjct: 125 VEIVVDNGLTDIVAAGLDAGIR------SGDIIERDMIAVPIGPDLTMTMVAAPSYMAGR 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC---LQVNSYLSIMQ 233
             P   Q+L +H  I     +P     + W L    R   E R+     +  N+   ++Q
Sbjct: 179 TPPARPQDLTRHRCINI--RLPTHGAVYAWELGQGGR---ETRVRVAGQVTFNTARLVLQ 233

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
             + G GIA LP   V     +  LV +M D   P    +  YP
Sbjct: 234 AALDGFGIAFLPAGRVAPHLADGTLVPLMTDWSEPYPGYHLYYP 277


>gi|288935131|ref|YP_003439190.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889840|gb|ADC58158.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 296

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 148/295 (50%), Gaps = 32/295 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL- 66
           L +F  V   GSFT AA+ L + + ++S+ I  +E ++G+KL +R  R L++T +G    
Sbjct: 5   LNIFVQVVEQGSFTRAADILQIHRPTVSKAIQQIEDDLGVKLIHRTTRKLSVTAEGEAFY 64

Query: 67  HR---VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           HR   V SEV   + +        ++ P G+LR+   + L   +L  NLK F  LYPDI 
Sbjct: 65  HRARLVLSEVNDMMASF-----SPTLPPRGRLRLDVPLALAHAILIPNLKHFQSLYPDID 119

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+  +K  D+  +  DC +RL + +Q SS I R+L  I M   AAP YL     P ++
Sbjct: 120 VVLVSSDKRTDLITEGVDCLVRLGE-LQDSSFISRRLGDIRMVTCAAPSYLLQHGRPETL 178

Query: 184 QELDKHNLIT-FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCV 236
            +LD+H  I  F D     ME   W  T D      RP+G    S L  NS   I+  C 
Sbjct: 179 ADLDQHRAINFFSDHSRDVME---WKFTKDGKIVSLRPVG----SMLVDNS--DILLSCG 229

Query: 237 LGSGIALLPDYIVKDNPNLVR-IMEDVIT--PSFT--VYFCYPEALKNTGKLKAF 286
           L +G+ ++        P++    +E+++T  PS +  V   YP+    + K++ F
Sbjct: 230 L-AGLGIIQATFNALAPHIASGALEEILTQYPSVSKPVSVMYPDRRYLSPKVRVF 283


>gi|190890502|ref|YP_001977044.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695781|gb|ACE89866.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 294

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 140/289 (48%), Gaps = 10/289 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA   SF  AA+ L +S  ++SR +S LE  +G +LF R +R L LT+ G +L   
Sbjct: 1   MFAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFGLRLVDS 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + +Y + E  +   +E + +P G +R+A  +D G   L   L +F  L+P+I I L + 
Sbjct: 61  AARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEISIDLHMS 120

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +DI  D  D A+R+   +  SSLI R+L  +     AAP YL     P   +EL  H
Sbjct: 121 DAVVDIVGDGFDAALRI-AVLPDSSLIARRLTPVDRFILAAPAYLDRYGVPEHPRELAAH 179

Query: 190 NLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           + + +     +  +D   L   +    +  P  S    NS + ++   + G GI  LP++
Sbjct: 180 HCLGYAY---RARQDVWRLRNGEGKEEVVVPSGSLRATNSEV-LVPMALRGLGIIELPEF 235

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  D   +  L  I+ D   P+  +YF  P A     K++   +F+  +
Sbjct: 236 LAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLSDFMMAR 284


>gi|254251562|ref|ZP_04944880.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124894171|gb|EAY68051.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 294

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 137/282 (48%), Gaps = 11/282 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S++ ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAVGKRIARLEARLNVRLFHRSTRSVTLTAEGTRFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              V  +++  + EL +S   P G+LR++  TI     L+   L +F+  YP+I++ L  
Sbjct: 69  CRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIG---TLMLPVLADFMTAYPEIELDLDF 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  +  D  +R  +P   S L  R L     H  A+P YL+    P +  +L +
Sbjct: 126 SDRLVDVVDEGFDAVLRTGRP-ADSRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLAR 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  + +    P   +   W     R    P +    V N+  + + + + G GIA LP++
Sbjct: 185 HRCLHY--RFPSSGKLEIWPLRASRSHAPPAVPVSMVSNNAETRLCFALRGLGIACLPEF 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            V+   D   L  +++D +     VY  +P     T +L+AF
Sbjct: 243 FVREPLDAGTLRTVLDDYVASRTPVYVLWPSGRHPTPRLRAF 284


>gi|194432707|ref|ZP_03064992.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|194418969|gb|EDX35053.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|332097559|gb|EGJ02538.1| hypothetical protein SD15574_0666 [Shigella dysenteriae 155-74]
          Length = 304

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 144/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AI     +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIHA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|218683009|ref|ZP_03530610.1| transcriptional regulator, LysR family protein [Rhizobium etli CIAT
           894]
          Length = 305

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 144/297 (48%), Gaps = 14/297 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA   SF  AA+ L +S  ++SR +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEGLAMFAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +Y + E  +   +E + +P G +R+A  +D G   L   L +F  L+P+I 
Sbjct: 66  LRLVDSAARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEIS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +  +DI  D  D A+R+   +  SSL+ R+L  +     AAP YL     P   
Sbjct: 126 IDLHMSDAVVDIVGDGFDAALRI-AVLPDSSLVARRLTPVDRFILAAPAYLDRHGVPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239
           +EL  H+ + +     +  +D   L   +   G+  +      L+  +  +++   + G 
Sbjct: 185 RELTAHHCLGYAY---RARQDVWRLRNGE---GKEEVIVPSGSLRATNSQALVPMALRGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  LP+++  D   +  L  I+ D    +  +YF  P A     K++   +F+  +
Sbjct: 239 GIIELPEFLAHDYLVDGQLTPILPDWTLATGALYFVTPSARSRPAKIEVLSDFMMAR 295


>gi|90577525|ref|ZP_01233336.1| hypothetical transcriptional regulator [Vibrio angustum S14]
 gi|90440611|gb|EAS65791.1| hypothetical transcriptional regulator [Vibrio angustum S14]
          Length = 306

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 157/304 (51%), Gaps = 21/304 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FD + +++F  V    SFT AA +L L++S++SR+++ LE  +G+KL  R  R L LT
Sbjct: 8   IGFDLNTIKIFARVVEIQSFTQAAAELELTKSTVSRKVAELERYLGVKLLTRSTRQLVLT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   +R  S +   L+ +++E+  S     G L +   +++G+ ++   +K F+ L+P
Sbjct: 68  AEGDTFYRSCSHILELLQQSELEVTASHDLICGTLNMVMPVEVGKGIIGDCIKAFMKLHP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L L N+ +D+  +  D  I++ + I+ SSLI R          A+P Y++    P
Sbjct: 128 NLKIHLELSNRKVDLIKEGFDIMIQVGE-IEDSSLIVRTFHHTTRVLVASPKYIEQYGLP 186

Query: 181 LSIQELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L           IP + +   + ++T ++ + E      +VN+  + +  C+ G 
Sbjct: 187 QNLSDLK----------IPHQQIRMISNVSTSNKDVLEKLPYRFKVNTLSAALDMCLEGF 236

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSF-------TVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  +P+++ ++  N  +++   I PS         V F YPE      +L+AF +F   
Sbjct: 237 GITYIPEFLCRNLINEGKLIH--ILPSLYKSQIPIPVSFIYPERDLMPRRLRAFIDFTIT 294

Query: 293 KARD 296
           + +D
Sbjct: 295 QFQD 298


>gi|187923033|ref|YP_001894675.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714227|gb|ACD15451.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 305

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 144/296 (48%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE G+
Sbjct: 4   FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++   +  L      P+G +R+ T+  L + LL   L +F   YP+I +
Sbjct: 64  LFYERCVRILAEVTDAESSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPEIDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +++ID+  D  DC IR+  P + SSL+ R++    +   A+P YL+   EP +++
Sbjct: 124 RLGLADRNIDLIQDGVDCVIRMGTP-EESSLVARRIGQARIVTCASPAYLEKYGEPTTLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  + +  +  +    F +   VD  I +  + S L VN     +    LG GI  
Sbjct: 183 ELSEHRAVNY--VSARTGRTFPFEYQVDGEIAKVSLKSVLAVNDGSVYIGAAALGHGIIQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              ++V D      L  I+    +P   +   Y      + +L+AF  ++   AR+
Sbjct: 241 PSRFMVADLIAQGALKEILTGYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARN 296


>gi|134291978|ref|YP_001115747.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135167|gb|ABO59492.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 297

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 16/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GHEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLRAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YL+    P S
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GALEDSTLIARPLGAWKMIACASPAYLERQGTPAS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
             EL  H  + +G           W   VD   G  R   +Q     N+   +      G
Sbjct: 180 PAELAGHTCLMYGR-----ERRVGWEFRVD---GVARTFDVQGPLVANNGEVVRDAATAG 231

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLP++IV    D   LV +++       T+   +P+  +    L+ F  F+
Sbjct: 232 LGIALLPEFIVGAALDGGALVPVLDAYAPAPLTLNAVFPQHREGFVTLRTFIGFL 286


>gi|330830708|ref|YP_004393660.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328805844|gb|AEB51043.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 299

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 141/294 (47%), Gaps = 23/294 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V   GS++  A +  +S   + + + GLE  +G KLF++  R  TLTE G    
Sbjct: 7   MRIFTRVVDLGSYSAVASEEGISAQMVGKHVLGLEQWLGGKLFHKTTRQQTLTELGQLFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +L  T+   Q    +P+G+LRIA  +  G + L   L  FL  YP + + L 
Sbjct: 67  ARCQRVLEELALTESLTQNLLAEPAGRLRIAAPLSFGHHRLVPLLPAFLDRYPKLDLDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +D+  +  D AIR  +P Q  +LI R L+T H    AAP YL +   P    +L 
Sbjct: 127 LSPRWVDLVEEGFDAAIRTLRP-QDEALIARPLLTQHYRLCAAPDYLNSHGVPRHPADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           +H          +C+   NW           D    E R+ S L++N + +++   + G+
Sbjct: 186 RH----------QCLHG-NWGEHERWQFVGEDGQSEEVRVASRLRINHWPALLTAALSGA 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI L P   V+D+     L+ +++   +P+ T+YF YP A +   K+    +F+
Sbjct: 235 GITLQPAEQVRDHIAAGRLLPLLDHYQSPAKTLYFIYPAARRQVLKITLLGDFL 288


>gi|114800121|ref|YP_759389.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114740295|gb|ABI78420.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 306

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 142/290 (48%), Gaps = 27/290 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +++F  VA +GSF+ AA  L L Q ++SR+I  LE  +G  LF R  R L+LTE G +
Sbjct: 5   EAMQLFVRVADAGSFSRAAADLELGQPTVSRRIQDLEASLGTTLFQRTTRALSLTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R   ++  + +  + E +     P G LRI+ +    + ++   +  FL  Y  I+  
Sbjct: 65  FYRRAVDILTEFDEAEAEARGLEHSPVGLLRISCSHSFARRVVAPAVPGFLAAYSSIRFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ D+   D+  +  D A RL + ++ S L+ +KL       +A+P Y+     P +++E
Sbjct: 125 LVSDDSLTDLVSEGIDIAFRLGE-LRDSRLMAKKLGEAPQVLWASPEYIARHGAPQTVEE 183

Query: 186 LDKHNLITF-------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +  HN + F        DL  +  E F   A VD P         + +S  ++++    G
Sbjct: 184 VGNHNAVVFRHNRQTVWDL-SRGNEHFE--ARVDGP--------FRASSGETLLEAAAGG 232

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            GI L P ++  +   +  LVR++ +   PS +++     A+  +GKL+ 
Sbjct: 233 LGILLAPAWLASECFGDQRLVRVLPEWQGPSLSIH-----AVWTSGKLRG 277


>gi|91224808|ref|ZP_01260068.1| transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91190354|gb|EAS76623.1| transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 302

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 12/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAEQL +S+S +SRQI+ LE ++G+ L  R  R L LTE G  L+
Sbjct: 10  IRSFVLIAQLGNFTKAAEQLGVSRSHVSRQITNLEQQIGVTLLQRTTRTLNLTEAGKVLY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           +      H ++   + + +      G +RI      LG++++   + +FL+ +P + I L
Sbjct: 70  KQCETALHNIDQAVMAVVDDVEDLRGDIRINCVGGYLGEDVVADIVAQFLIQHPQVSINL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+ K +  S+ I RKL+ + M  YA+P+YL+    P   ++L
Sbjct: 130 DFSSHRVDLIADEFDIAFRMGK-LDDSNFIARKLIDVEMGTYASPNYLETYGYPSHPKDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +KH  +T G +     E+ N   + +  I G+ R    +V     +++  + G+GI  +P
Sbjct: 189 EKHVCLT-GSVTRWAFENTNTKQSTEHQIRGQLRCKSGRV-----MIKAALAGNGIIRVP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               +       L  +  +   PS      Y        +++AF +F
Sbjct: 243 ALYCQQELQTGKLKEVFTNWSIPSVEFSLLYHHDRHQPKRIRAFVDF 289


>gi|117922362|ref|YP_871554.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614694|gb|ABK50148.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 320

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 141/281 (50%), Gaps = 15/281 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +A  GS + AA QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE G+  +  
Sbjct: 11  VFAAIAEKGSMSAAATQLNLSSSAVSQQVAKLEMDMGISLFHRNTRHLTLTEAGALFYEN 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   +E+ + +L      PSGKL+IA  +  G  LL   L   L  +P I + L L 
Sbjct: 71  CIKIIKIVESAEQQLHALKGTPSGKLKIAAPVGFGGGLLSQPLAHLLAAHPQISLNLQLQ 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCREPLSIQEL 186
           +  IDI  +  D AI +  P+  S+LI R L    M   AAP Y+   ++ + P  +Q  
Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARPLADWRMLLCAAPSYIPLHQSLQHPADLQGF 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++   I+     P+ +        ++ P        + VN+  +++Q  + G G A+LP+
Sbjct: 190 NR---ISHSYAKPEFLTHLQTQERIELPAQR-----INVNNMQTLIQLTLDGLGFAVLPE 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
             V     +  LV ++ +    +++VY       K   K+K
Sbjct: 242 PEVHQYLASGQLVTLLPEWSLRTYSVYSVTSARDKQPAKVK 282


>gi|149922495|ref|ZP_01910927.1| probable transcriptional regulator [Plesiocystis pacifica SIR-1]
 gi|149816690|gb|EDM76182.1| probable transcriptional regulator [Plesiocystis pacifica SIR-1]
          Length = 301

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 142/290 (48%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L VF      GSF   A  L LS +++S+ +  LE  +G++L +R  R ++LTE G 
Sbjct: 4   FTALTVFRHAVELGSFAATARHLRLSPAAVSKNVGELEAALGVRLLHRTTRRMSLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   + V  +L+  +  L     +  G LR++  + L        +  FL  +P++ +
Sbjct: 64  LYYESVARVLDELDDAEGMLDAMQGETKGSLRVSAPMSLTLTCFASAIPAFLQRHPELSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L LD++ +++  +  D AIR  + ++ SSL+ RK++T+      AP YL+    P   +
Sbjct: 124 DLRLDDRRVNLVEEGFDVAIRGTEQLEDSSLVARKVMTLAHVVCGAPDYLERRGTPTHPK 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  + F  L     E   W  +   R + +P     QV+S L++ +    G G+ +
Sbjct: 184 QLREHECVGF-SLAAHARE---WSFSKRGRELRQPVRGRYQVSSSLAVREALRAGLGLGM 239

Query: 244 LPDYIVKDN--PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           +P+  V+++     +R +    TP S TVY  YP       K++AF +F+
Sbjct: 240 IPEVYVREDLAAGRLRAVLGEWTPRSATVYAVYPSKRYLVPKVRAFVDFL 289


>gi|42522567|ref|NP_967947.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100]
 gi|39575099|emb|CAE78940.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100]
          Length = 312

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 148/306 (48%), Gaps = 20/306 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++R F  + +SGSFT AAE L   +S +SR++S LE ++G++L YR  R   LTE 
Sbjct: 17  LDLNQIRTFVKLVQSGSFTKAAEVLKQPKSRVSRRLSALEKDLGVQLIYRTTRQFQLTEM 76

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +   LET   E+ ES+ + SG +R+  + D+G   L   + EF   YP +
Sbjct: 77  GRIYYERARGLIEGLETLTGEVSESTAEISGVIRVTASDDMGVKHLPLIVDEFTRQYPRV 136

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +  L L    +D+  +  D  IR+   ++ SSL  RK+ T+     A+P +L+  R    
Sbjct: 137 RFDLYLTQAYVDLVKESVDVGIRIGN-LKDSSLRARKIGTVRNLLVASPGFLERYRVG-- 193

Query: 183 IQELDKHNLITFGDLI--PKC----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            ++L K     F  L   PK       D   L     PI       +  N+   ++    
Sbjct: 194 -EDLTKLAAAPFLGLTQQPKLEVVRSSDGKRLTLKTNPI-------VTANNPEMLLNLAR 245

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LG G A +P+++ KD   +  +V+I +++     +V    P+  + + K+K F +F + +
Sbjct: 246 LGKGYAFVPEFLCKDELRDGRMVQIHKNLRGDEVSVSLVSPDTKETSQKVKRFMDFAYKR 305

Query: 294 ARDWKF 299
            ++  F
Sbjct: 306 LKEVYF 311


>gi|222085196|ref|YP_002543726.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722644|gb|ACM25800.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 307

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 137/289 (47%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A  GSF  A   L LS S++ + ++ LE ++G++L  R  R + LTE+G   H
Sbjct: 7   LNAFVRSADLGSFAAAGRVLGLSASAVGKAVTNLERQLGVRLMQRSTRSIRLTEEGRLFH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   LE  Q  L ++   P G+LR++  I +  + L   L EF++ YP++++ + 
Sbjct: 67  ERCRRVLDDLEDAQASLAQAVAVPRGRLRVSVPI-VSYHFLLPVLPEFVVRYPEVELDID 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  D AIR    +  S L+ R L    M   AAP YL+    P   + LD
Sbjct: 126 FNDRIVDMIEEGVDVAIR-SGDLPDSRLMSRTLRPFQMLLCAAPAYLERHGVPDCPRALD 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
            H  I F    P   +  NW  T+  P G P +   + L  N+  ++    + G GI  +
Sbjct: 185 DHLAIRF--RFPNSGKLQNWPLTL--PDGGPELHMKTALSCNNMEALRGAVISGLGIGCM 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD++ +       L  +++D I      +  +P     + K++ F +F+
Sbjct: 241 PDFLARSPLAEGKLRTVLDDHIDGPGHFHLLWPSNRHLSPKVRVFVDFL 289


>gi|90579285|ref|ZP_01235095.1| putative transcriptional regulator [Vibrio angustum S14]
 gi|90440118|gb|EAS65299.1| putative transcriptional regulator [Vibrio angustum S14]
          Length = 294

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 9/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V  +GS+T A+ +  +  ++++R+I  LE  + I+L  RHAR L+LTE G K
Sbjct: 4   DDLNLFRMVVENGSYTAASRKTQVPVATLTRRIQALEEGLNIRLLNRHARKLSLTEAGQK 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +  +L  T   + E     +GKLRIA   ++ + +LQ  L  F+L +P I IQ
Sbjct: 64  FYHDCAPLLQQLLDTTEHISEECKGAAGKLRIAAPTNITKVMLQPLLNAFMLEHPAISIQ 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + N+   +     D   R+  P + S+LI R++  +     A+P YLK   EP   Q+
Sbjct: 124 LYMSNEPDQLDPTDWDVMFRI-GPQRDSTLIARRINEVKDILVASPEYLKKNPEPKHAQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+    L+   + + N         G    S L V     + + C  G GI L+P
Sbjct: 183 LHDHVLLKGNPLLRWRLNNHNGETVTINERGRFEASELNV-----VRKACCAGLGITLMP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           D +++       + +++++       VY  Y        KL+ F +F
Sbjct: 238 DVMLEKYIAAGEVTQVLKNWSANPRDVYLIYNHRDYQPEKLRLFIDF 284


>gi|171322080|ref|ZP_02910949.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171092608|gb|EDT37915.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 294

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 140/295 (47%), Gaps = 16/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVSTVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GALEDSTLIARPLGAWKMIACASPAYLKRQGTPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
             +L  H  + +G           W   +D   G  R   +Q     N+   +    + G
Sbjct: 180 PADLAAHTCLMYGR-----ERRVGWEFRID---GAARTFDVQGPLVANNGEVVRDAAIAG 231

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLP +IV    DN  LV +++       T+   +P+  +    L+ F  F+
Sbjct: 232 LGIALLPHFIVGAALDNGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFL 286


>gi|94497397|ref|ZP_01303968.1| transcriptional regulator, LysR family protein [Sphingomonas sp.
           SKA58]
 gi|94423260|gb|EAT08290.1| transcriptional regulator, LysR family protein [Sphingomonas sp.
           SKA58]
          Length = 297

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 139/292 (47%), Gaps = 14/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDWD LRVF  VAR+     AA  L +  ++I+R++S LE  +G  LF        LT  
Sbjct: 2   FDWDDLRVFLAVARARKIAPAARALGIDATTIARRLSRLEKALGADLFEMGGGERALTAS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R              E++    + SG++R++     G  +L   +  F   +P I
Sbjct: 62  GLTLLRHAEGAESAALAAMEEVKGQEHRLSGQVRLSVAEGFGTWMLAPGMGAFNRRHPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+  +  ++ S   AD A+ L +P Q   L  R+L    +H YAAP YL     P +
Sbjct: 122 RLDLVTASGFLNPSNREADMAVMLARP-QRGRLTVRRLGDYRLHLYAAPAYLDRAGHPTT 180

Query: 183 IQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--G 238
             +L  H LI +   +P+ +   + ++L  V+  + E ++    +N     MQ  ++  G
Sbjct: 181 SADLRHHVLIGY---VPEFIFSPELDYLDEVEAGL-EAQLRATSIN-----MQQRMIAEG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +GI +LPD+I + +P L  IM D +  + + +      L++  ++ A   ++
Sbjct: 232 AGIGVLPDFIGRRDPALTAIMTDAVEITRSFWLVMHGDLRHLARIGAVAEWL 283


>gi|313498962|gb|ADR60328.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 292

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 140/291 (48%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R+F  V   GSF+  A +L++ Q ++S+Q+  LE  +G  +F R  R L LT+QG 
Sbjct: 4   FDSMRIFVRVVERGSFSAVARELNMGQPAVSKQVRALEQYLGGAVFARSTRHLALTDQGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    E+  +LE           + +G LRIA  +  G+  +   +  FL  +PD+QI
Sbjct: 64  RFYSHCQEILSQLEHATRSFASGQEQIAGPLRIAAPVSYGRLCIAPLIGAFLQRHPDVQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L++ + D+ M+  D AIR+   ++S  L+   L T     YAAP YL    +P    
Sbjct: 124 DLRLNDYNEDLLMENIDLAIRI-GVVKSEGLVAVPLGTSTRRVYAAPAYLDRHGQPREPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           EL  HN I F       +E ++ W  T      E  I   +  N+  +I +  + G GI+
Sbjct: 183 ELAGHNCIAF-----TLLEHYDRWHFTHRGEALEVAIKGNVTSNNSEAIREMVLGGLGIS 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L P ++     +   +  ++++  T +  V   +    + + +  AF +F+
Sbjct: 238 LSPQWLFAADFEQGGVCSLLDEYQTTALPVSAVFSRERRRSARTMAFIDFL 288


>gi|118161423|gb|ABK64104.1| putative LysR transcriptional regulator [Janthinobacterium lividum]
          Length = 306

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 111/203 (54%), Gaps = 3/203 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++VF  V  +G F+ AA++L +S SS++ Q++ LE   G++L  R  R ++ T +G +
Sbjct: 5   EAMKVFCAVVEAGGFSKAAQRLGISTSSVTNQVAALEKHFGVRLLQRTTRSMSQTAEGMQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H    +V   +   +  L +++ +PSG LR+     + +NL+   L  F+  YPDI ++
Sbjct: 65  CHAQARQVLAYMAALEASLLQAAERPSGSLRVDMPSSISRNLVAPALPRFIAAYPDIALR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  +R+ +P Q SSL+ R L+ +     AAP ++     P + QE
Sbjct: 125 LTVSDRLVDMVEEGIDVMLRIGEP-QDSSLVARSLLGMDYLCCAAPAFVARHGMPRTPQE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWL 208
           LD+   + F  L PK  +   WL
Sbjct: 184 LDQFACLHF--LYPKARQVRPWL 204


>gi|62289046|ref|YP_220839.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82698983|ref|YP_413557.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus
           2308]
 gi|237814534|ref|ZP_04593532.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|254690370|ref|ZP_05153624.1| transcriptional regulator LysR [Brucella abortus bv. 6 str. 870]
 gi|254694858|ref|ZP_05156686.1| transcriptional regulator LysR [Brucella abortus bv. 3 str. Tulya]
 gi|254696487|ref|ZP_05158315.1| transcriptional regulator LysR [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731400|ref|ZP_05189978.1| transcriptional regulator LysR [Brucella abortus bv. 4 str. 292]
 gi|256258624|ref|ZP_05464160.1| transcriptional regulator LysR [Brucella abortus bv. 9 str. C68]
 gi|260755916|ref|ZP_05868264.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260759140|ref|ZP_05871488.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260760864|ref|ZP_05873207.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884939|ref|ZP_05896553.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|261215191|ref|ZP_05929472.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|297247462|ref|ZP_06931180.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196]
 gi|62195178|gb|AAX73478.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82615084|emb|CAJ10013.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Brucella melitensis biovar Abortus 2308]
 gi|237789371|gb|EEP63581.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|260669458|gb|EEX56398.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260671296|gb|EEX58117.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676024|gb|EEX62845.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260874467|gb|EEX81536.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|260916798|gb|EEX83659.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|297174631|gb|EFH33978.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196]
          Length = 297

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 133/285 (46%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G +L 
Sbjct: 9   LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI I+L 
Sbjct: 69  AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   Q+L 
Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+ I     +P   E F W  T  R   + RI+    L   S   ++Q C  G G+A L
Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACFAGFGLAYL 244

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P DY  +  ++  LV ++ D        +  YP   ++   L A 
Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289


>gi|83716061|ref|YP_440296.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167617021|ref|ZP_02385652.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257140926|ref|ZP_05589188.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83649886|gb|ABC33950.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 334

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLR+     +G+ ++  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQSNNRKPHGKLRVDMPGSIGRLIVIPSLCEFHSRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP +I+ L 
Sbjct: 127 LSDRPVDLLQEGIDCVIRV-GALQDSSLVARRVGLFEGTTVASPAYLEKYGEPQTIEALA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +     +      W   +D    E +++ L  VN   + +   + G G+   P 
Sbjct: 186 QHKAVNY--FSSRTGRTIEWAFLIDGKEVEVKMNGLVSVNDADAYVTCGIEGFGLIQPPL 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V     N  L  ++         +   YP +   + K++ F +++
Sbjct: 244 FMVLPHLRNGTLKEVLPGYKPLPMPISVVYPHSRHLSPKVRVFVDWV 290


>gi|270261030|ref|ZP_06189303.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044514|gb|EFA17605.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 306

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 149/298 (50%), Gaps = 26/298 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  VA   SF  AA+ L+++ S+ISR +  LE +V + L  R  R ++LTE G +  
Sbjct: 9   VKAFVAVAEHQSFARAAQALNMTPSAISRLVKKLEQQVDMLLINRTTRAMSLTEAGQRYF 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    +L      +++   +P G LR++T++  G+  +  +L  F++ YP ++I L+
Sbjct: 69  TDCSAALEQLRMAYERMRDEQSQPQGTLRVSTSLSFGRLHVAPHLAAFMVQYPQLRIDLL 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +DI  +    AIR+ + +  SSL+ RKL+       A+PHYL+    P +++EL 
Sbjct: 129 MTDRYVDIVAERVAVAIRIGR-LPDSSLVARKLLNNRRILVASPHYLQQHGTPTTLEELR 187

Query: 188 KHNLITFGDLIPKCMEDF-NWL------ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +H       L+     D  NW       ATV +P G      ++ ++  ++ Q+C+ G G
Sbjct: 188 QHQC-----LVSTASHDGENWRLFGPAGATVFQPKGR-----MRADNGDAVKQFCIDGQG 237

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLK 293
           IA      + ++  L  +++  + P +T     VY  YP         +A  +F+ L+
Sbjct: 238 IAFHSAVTMAESIRLGELVQ--LLPQWTGRETGVYSVYPPGPVGPAA-RALIDFLTLR 292


>gi|304411683|ref|ZP_07393295.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307306265|ref|ZP_07586010.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304349871|gb|EFM14277.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306911138|gb|EFN41565.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 299

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 138/274 (50%), Gaps = 7/274 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A+++L LS+S++S++I+ LE  +GI+L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSQASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRCLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +                  + E    P G LRIA  +  G+  +   + EFL  YP IQ+
Sbjct: 64  RYFDYIRPAVKLAADGLDAISELQQVPQGNLRIAVPMVFGRLYIAPLIPEFLRRYPKIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  ++     D AIR+ + +  SSLI RK+        A+P YL     P + Q
Sbjct: 124 QMQMDDKTTNLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLVRHAAPQTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +     +   ++ +L+  D    +P     QVN+  +I Q  + G GIA L
Sbjct: 183 QLSQHNCLFYSYF--RDGVEWTFLSPQDPTRIQPN-GNYQVNNSDAIHQATLDGLGIANL 239

Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPE 275
           P ++V  +    R   ++ D   P   +Y  YP+
Sbjct: 240 PRFMVDSDLQAGRLQALLTDHPLPEHGIYAVYPQ 273


>gi|307727271|ref|YP_003910484.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587796|gb|ADN61193.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 334

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 142/287 (49%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q  + KP GKLRI     +G+ L+   L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPKLCEFHQRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y++    P S+++L+
Sbjct: 127 LSDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPSYIERAGMPTSLEDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +     +     +W   VD    E ++ S + VN   + +   + G G+     
Sbjct: 186 NHKAVNY--FSSRTGRTLDWAFMVDGKEVEVKMKSIVSVNDADAYVTCGLEGFGLIQPAL 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V     +  LV ++ ++      +   YP +   + K++ F ++I
Sbjct: 244 FMVLPQLRSGQLVEVLPELKPLPMPISAVYPHSRHLSPKVRVFVDWI 290


>gi|221199095|ref|ZP_03572140.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205353|ref|ZP_03578369.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175144|gb|EEE07575.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181546|gb|EEE13948.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 335

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 142/296 (47%), Gaps = 11/296 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 28  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDTRLFQRTTRSMSLTREGELFYEN 87

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LRI +T   G+ ++   L++F   YPDI ++L+L
Sbjct: 88  CRPGIDHLAQALEDMRELRSGPPSGHLRIGSTPGFGRKVIAPLLRDFHARYPDISLELLL 147

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +D S D  D A R  + ++ S+++ R+L+ + M   A+P Y      P  + EL +
Sbjct: 148 NDRPVDFSADRIDVAFRDGR-MEDSAIVARQLIPMQMIVCASPAYAHRYGLPRHVNELAQ 206

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDY 247
           H  I       +  E   W   VD    + +++     + + ++   VL G GIA LP Y
Sbjct: 207 HRCINLRTASGRVKE---WEFKVDGLAQQAQLAAHHTFNDMDLVVRAVLDGLGIAQLPAY 263

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298
            V D   +  LV  +          Y CY        +++AF +++    +ARD +
Sbjct: 264 QVCDLLADGQLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRAFIDYMIEQTRARDLQ 319


>gi|295700012|ref|YP_003607905.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439225|gb|ADG18394.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 334

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 102/187 (54%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q  + KP GKLRI     +G+ L+   L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPALCEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y+K    P S+++L+
Sbjct: 127 LTDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPDYIKRAGMPTSLEDLE 185

Query: 188 KHNLITF 194
            H  + +
Sbjct: 186 NHKAVNY 192


>gi|187919244|ref|YP_001888275.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717682|gb|ACD18905.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 334

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 143/287 (49%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q  + KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y++    P S+++L+
Sbjct: 127 LTDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPDYIERAGMPTSLEDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +     +     +W   VD    E ++ S + VN   + +   + G G+     
Sbjct: 186 NHKAVNY--FSSRTGRTLDWAFLVDGKEIEVKMKSIVSVNDADAYVTCGLEGFGLIQPAL 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V     +  LV ++ ++      +   YP +   + K++ F ++I
Sbjct: 244 FMVLPHLRSGQLVEVLPELKPLPMPISAVYPHSRHLSPKVRVFVDWI 290


>gi|187924401|ref|YP_001896043.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715595|gb|ACD16819.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 345

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 143/303 (47%), Gaps = 15/303 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++  +  +  F  VA  GSF  A E+L + +S++SR +  LE ++  +LF R  R   LT
Sbjct: 26  IAASYTGIMAFMAVASEGSFAKAGERLGVGRSAVSRNVQKLEAQLSTRLFLRTTRNTQLT 85

Query: 61  EQGSKLHRVTSE-VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            +G +      + V H +E     L+     P G +RI++T+  G+ ++   L++F+  Y
Sbjct: 86  REGQRFFENCHQGVSHLVEAMNDMLELREGPPRGLVRISSTVGFGRKVVAPLLEKFVKAY 145

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI I L+LD++  D + +  D A R  + I+ SS+I R+L+ + M   AAP Y      
Sbjct: 146 PDIAIDLLLDDRPTDFTSERIDVAFRDGR-IEDSSIIARQLIPMQMALCAAPSYAAAHGL 204

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYC 235
           P +++EL +H+ I F     +    F W   +D   G  R     + L  N    ++   
Sbjct: 205 PHTLEELCRHDCINFRFSSGRV---FEWEFKLD---GRVRKYLPTAHLTFNDADLVLHAV 258

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + GSGIA +  Y V ++     LV  +          Y CY        + + F +F+  
Sbjct: 259 LQGSGIAQMAGYQVSNHIVAKELVVALSAYAPDDRGHYICYLNRQHLPTRTRVFIDFMAA 318

Query: 293 KAR 295
           + R
Sbjct: 319 QVR 321


>gi|256556958|gb|ACU83580.1| transcriptional regulator [uncultured bacterium HF130_AEPn_2]
          Length = 336

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 144/288 (50%), Gaps = 19/288 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VA + SFT A   L +S S++ + I+ +E  +G++LF+R  R +TLT +G+   
Sbjct: 29  MSVFVQVAETRSFTQAGRLLGVSSSAVGKSIARMEQRLGVRLFHRSTRSITLTAEGALFL 88

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +  ++E  + EL E++  P GKLRI  ++   + LL   L EF+  YP+I++ + 
Sbjct: 89  ERSRRILAEVEAAEQELTEAATTPRGKLRI--SLPQVRGLLMPVLTEFMRAYPEIELDVD 146

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQR-----KLVTIHMHAYAAPHYLKNCREPLS 182
             ++ +D+  +  D  +R  KP + S L  R     +LV +    Y A H +  C   L+
Sbjct: 147 FSDRMVDVIEEGFDAVVRTGKP-EDSRLSARLLGHYRLVLVGAPQYFALHGVPACPTDLN 205

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV-LGSGI 241
                +H     G L     E +        P  EP +    V++ +  +++ V  G GI
Sbjct: 206 HHACLRHKFCATGKL-----ESWPLRHLPGEP--EPVLRAPLVSTTIESLKHVVHEGLGI 258

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A LPD++V+   +   L R+++D +  S + +  +P +   + KL+ F
Sbjct: 259 ACLPDFMVRVSVEQGRLQRVLDDYLEHSGSFWMLWPSSRHASAKLRVF 306


>gi|146307756|ref|YP_001188221.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575957|gb|ABP85489.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 306

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 141/295 (47%), Gaps = 24/295 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +F  V    SFT AA  L + +S++SR+I+ LE  +G++L  R  R L LTE G  
Sbjct: 4   DDALIFTRVVECHSFTQAATSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEVGQA 63

Query: 66  LHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            +    ++   + + E   ++LQ    +PSG LRI + I+ GQ  L   L EF+  YP I
Sbjct: 64  YYERCRQIMLDFAEAEQAVMQLQR---EPSGLLRITSPIEFGQLFLGRVLGEFMRQYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++ L ++ +D   +  D AI++ +P Q S+LI RKL        A+P YL     P S
Sbjct: 121 DAEVELTSRSVDPLEEGVDIAIQVGQP-QDSTLIARKLFESGRRLCASPAYLAAHGTPRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGS 239
           + EL+ H  I      P+      W      P+    + C +V   N+     +  + G+
Sbjct: 180 VAELEGHRAILLQHDAPR-----YW------PLLGEHLPCQRVMTCNNITFAREATLAGA 228

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GI+ LP  I ++   +  LV ++ +   P   VY  YP       K+K F +F+ 
Sbjct: 229 GISGLPVMISEEAVRSGRLVELLPEARLPVGEVYAIYPSRRFQAMKVKTFLDFLI 283


>gi|300693886|ref|YP_003749859.1| transcription regulator protein, lysr [Ralstonia solanacearum
           PSI07]
 gi|299075923|emb|CBJ35232.1| putative transcription regulator protein, LysR [Ralstonia
           solanacearum PSI07]
          Length = 307

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 139/291 (47%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V   G F  AA +L L+ SS++RQ++ LE  +G +L  R  R +TLTE G++ +
Sbjct: 7   LSAFVAVVEHGGFAPAARRLGLAPSSLTRQLNALEESLGTRLMNRSTRSVTLTEAGAQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +LE+    + E +  PSG LR+   +  G+  +   +  FL  +P +++ + 
Sbjct: 67  EDARRILEELESADRTVSELAGPPSGLLRVTMPVAFGRLHVAPAIPAFLRRFPGMRLDIR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +++  D  D AIRL   + +S+L+ RKL        A+P YL     P   ++L 
Sbjct: 127 LTDAMVNLVEDRIDVAIRL-GALTASNLVARKLAPHRRVICASPDYLGEHGTPAQPRDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN + F  L      D  W  T D    + P    L+ N    + +  V G+G+ L+P 
Sbjct: 186 HHNCLLFDYLT----GDSTWTLTRDGKREKVPVSGNLRANGSELLREAAVGGAGMLLMPT 241

Query: 247 YIVKDN---PNLVRIMED-VITPSF---TVYFCYPEALKNTGKLKAFRNFI 290
           ++V D+     LV ++E    TP      ++  Y    + + KL  F +F+
Sbjct: 242 WLVGDDIAAGRLVPVLEPWTPTPGADEGAIWAVYLPNRRGSKKLAGFLDFL 292


>gi|108760006|ref|YP_634590.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108463886|gb|ABF89071.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622]
          Length = 312

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V  +G  T AAE+L L +S++SR+++ LE  +G++L  R+ RGL LTE G  
Sbjct: 9   DDMLLFTEVVATGGITAAAERLGLRKSTVSRRLAALEERLGVRLIERNTRGLRLTEVGRD 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   + +  +       L ES V P G LRIAT   LG+ LL   + E LL  P ++++
Sbjct: 69  YHAHCARLVAEAREVNRALGESRVTPQGTLRIATLSLLGE-LLTPLIAELLLRNPLLRVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L    +D+  +  D A+R   P+  S+++ R+L  +    YA+P YL     P +  E
Sbjct: 128 VSLAEAHVDLISEEYDVALRT-GPLADSAMVARRLGRLRTGYYASPAYLARQGAPRTSAE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  +           D  W     R     P    L+V S  +       G G+  L
Sbjct: 187 LQGHACVVLA----APGTDEVWFFGEGRGAKSLPVTGRLRVPSVRAGQAAARAGLGVVRL 242

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P  +V ++     LV ++E    P   V+  YP   +   K++AF
Sbjct: 243 PASLVAEDVRGGLLVPVLETETPPGIPVFAVYPSRRQLPLKVRAF 287


>gi|289209246|ref|YP_003461312.1| LysR family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288944877|gb|ADC72576.1| transcriptional regulator, LysR family [Thioalkalivibrio sp.
           K90mix]
          Length = 301

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 140/295 (47%), Gaps = 19/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++++F  V  +G F HAAE L LS++++SR ++GLE  +G +L +R  R L+LT +G 
Sbjct: 4   FQQMQIFVAVVETGHFVHAAETLGLSKAAVSRAVNGLEERLGARLLHRTTRRLSLTSEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  +  +L   + E+ E     SG+LRI   +  G   L      F   +P +++
Sbjct: 64  TFFGRSKLLLEELAAAEGEISERGTAVSGRLRINVPVSFGIQHLAPLWGTFTARHPRVEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L+++ +D+  +  D A+R+   + SSSL+ R+L T  M   AAP YL     P   +
Sbjct: 124 DVTLNDRSVDLVDEGFDLAVRI-GTLDSSSLVARRLATTRMRICAAPDYLAASGLPAHPR 182

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           EL  H  I +     GD         +W L   D P+       L+ N+  + +   + G
Sbjct: 183 ELADHATIAYSYHATGD---------DWTLTGPDGPVAVTTRPVLRSNNGETCVAAALAG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI   P+++++       L  +  D  T +  ++  YP       K +A  +F+
Sbjct: 234 QGIVYQPEFLLQPHLQTGALQVLFPDWETATLGIHAVYPSRRYLLPKTRALIDFL 288


>gi|170697804|ref|ZP_02888890.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137306|gb|EDT05548.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 299

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 132/283 (46%), Gaps = 7/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR+G+   AA QL++ Q+++ R+I+ LE E+  +LF R      LT  
Sbjct: 7   MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPALYVLTTA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +     T +  +     + +G +RIATT  LG+  +   +      +  I
Sbjct: 67  GEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDSLGKRFVIPAIARLRRRHAGI 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  +   +  +++   AD AIR  +P +S  LI R+L  +    YA+ HYL    EP++
Sbjct: 127 DVVCVTSTEIANLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRHYLAERGEPVA 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D H+L+ +   +   M    W A    P    R+   Q +S + +++  + G GIA
Sbjct: 186 GSAFDGHDLVMYQQPVMPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEAALAGLGIA 240

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            LP +  +  P LVR+M       F V+      L  T +++A
Sbjct: 241 ELPCFRAEAEPELVRLMARRCN-HFDVWLVAHADLYKTARVQA 282


>gi|170741283|ref|YP_001769938.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168195557|gb|ACA17504.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 301

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 137/293 (46%), Gaps = 13/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA++GSF+ AA +L LS +++S+ +S LE  +G  LF+R +R L LTE G
Sbjct: 5   DFEAWAIFARVAQAGSFSRAAAELALSTATVSKAVSRLEARLGASLFHRTSRRLALTETG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  + ++Q  + +P G +R+A  +  G   L   L +FL  +P + 
Sbjct: 65  RAALEGAARIVAAGEAVEADVQTGAREPRGLVRLAAPMSFGLAHLAPRLPDFLADFPQVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     AAP YL     P   
Sbjct: 125 VDLHLSDAQVDLVGGGFDLGLRIAA-LSDSSLRVRRLCGVRRSLVAAPAYLARAGRPGHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           ++L +H  + +  L       F        P GE  ++    L+ N+  ++    + G G
Sbjct: 184 RDLARHACLGYAYLPNPERWHFTG------PGGEVAVAPAGRLRANNADALTPALLAGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+ PD+++ D+     L R++ +   P   +    P       ++ A   F+
Sbjct: 238 LAVQPDFLIFDDLASGRLERVLPEWSPPPIALNLVMPPGALRPARVVALIAFL 290


>gi|325291645|ref|YP_004277509.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325059498|gb|ADY63189.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 293

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 136/289 (47%), Gaps = 9/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    A+++L L+ +++SR+++ LE  +  +LF R   G  LTE+
Sbjct: 1   MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTSLEQALKTQLFIRRTNGCELTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L       +G +RI     LG + L   L      YPD+
Sbjct: 61  GQLFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI + +P Q   L+  KL    +  YA+  YL     P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITIERPEQ-GRLMFSKLTDYSLGLYASKSYLSEYGTPAD 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ L +H  I +  DLI       N+   + R       +  +++S     +    G+GI
Sbjct: 180 VETLKRHRRIGYVEDLI--FSPSLNYTGEIMRDWD----AAFEISSATGQTEAVRSGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +L +YI    P L+RIM   ++ S + +  Y E+ +   +++   +F+
Sbjct: 234 GILHNYIAGQYPELLRIMPH-MSISRSYWTAYHESARQLVRVRTVVDFL 281


>gi|307257945|ref|ZP_07539698.1| Transcriptional regulator protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307262340|ref|ZP_07543987.1| Transcriptional regulator protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306863492|gb|EFM95422.1| Transcriptional regulator protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867956|gb|EFM99785.1| Transcriptional regulator protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 295

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 123/248 (49%), Gaps = 11/248 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V ++  F +A+  +++  S++SR+IS LE  +G++L  R  R + LTE G+ 
Sbjct: 5   DDMRLFVEVVKANGFKNASNVMNVPTSTLSRRISLLEKAIGLRLLNRTTRKIELTEAGAI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V  + E     L E S KPSG LR++TT D  +  L   L EF   YP+I  Q
Sbjct: 65  YFERCKRVVIEAELAHEALDEMSYKPSGLLRVSTTQDFAKIFLLPYLAEFAECYPEINCQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ I++  +  D AIR+ + ++ S  I R L    +  YA+P YL   R P+ I E
Sbjct: 125 FHLSDEKINLVGNPVDLAIRIGR-LEDSHYIARFLTQSQLRLYASPTYLARNR-PIQIPE 182

Query: 186 -LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            L + N + FG           W L   DR +  P       N+   + Q    G GIAL
Sbjct: 183 NLAELNCLAFGS-------QQKWQLTQNDRMVEIPISGRFSANNIGFLCQLASDGLGIAL 235

Query: 244 LPDYIVKD 251
           LPD + K+
Sbjct: 236 LPDVVAKN 243


>gi|172062159|ref|YP_001809810.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994676|gb|ACB65594.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 330

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 149/300 (49%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE G +
Sbjct: 31  DDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTEAGER 90

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + ++
Sbjct: 91  VFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLNVR 150

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  +R+   I +  LI R+L T H    A+P YL     P ++ +
Sbjct: 151 LDLFDRLVDVAGEGYDLDVRIGDEI-ADHLIARRLATNHRVLCASPDYLARRGTPRTLAD 209

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233
           L  H+ +   +               D P G  R+      + ++V   LS       +Q
Sbjct: 210 LASHDCLAIKER--------------DHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQ 255

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + G GI L   +      +   L R++ D I P+  ++  YPE +  + K++   +F+
Sbjct: 256 WALAGRGIVLRSIWEAAPLIERGELCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFL 314


>gi|149907849|ref|ZP_01896517.1| putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
 gi|149808855|gb|EDM68786.1| putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
          Length = 301

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 8/290 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AA+ + L++S +S+ I+ LE E+G++L +R  R LTLTE G  
Sbjct: 5   DDFLIFYHLIEQGSFSKAADIVGLTKSVVSKHITRLEKEMGVQLIFRTTRKLTLTEAGKV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +Y  ++     +       SG +R+      G+ +L   + +F + YPDI + 
Sbjct: 65  FFEHARTIYQSVQGAVDAMNGLGDSLSGSIRLTVPTVSGEIILAEAIADFSISYPDIHVH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN  +D+  +  D AIR    +Q SS I R+LV       A+P YL N   P   Q+
Sbjct: 125 MDLDNSFVDLIDNNFDLAIR-TGALQDSSYIARRLVQAQWVICASPAYLANNGTPKRPQD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L+K+N + +        E   WL          +IS     N+  ++ +  +   G+  +
Sbjct: 184 LEKYNCLAYSHQESGANE---WLFKGREADYSVKISGNFSTNNSAALRKAALFNLGLIYV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P  +V D+     LV ++   +  S  +Y  YP       K+K F   I+
Sbjct: 241 PKVLVADDLQAGTLVEVLPKQVAKSLGIYAIYPYTKLQPLKVKLFIEHIY 290


>gi|261364503|ref|ZP_05977386.1| transcriptional regulator, LysR family [Neisseria mucosa ATCC
           25996]
 gi|288567439|gb|EFC88999.1| transcriptional regulator, LysR family [Neisseria mucosa ATCC
           25996]
          Length = 299

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 143/292 (48%), Gaps = 10/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F    +SGSFT AA+QL L++S+I ++I  LE  + ++L  R+ R L  T++G
Sbjct: 5   NLNDMTAFVASVKSGSFTAAAKQLGLTRSTIGKRIVRLEARLNVRLLQRNTRNLAPTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   + V  +LE  +  L + S++P G+L+I+  + LG+ +L   L +FL  YP   
Sbjct: 65  RLFYERCTAVLEELENAEQCLAQRSIEPQGRLKISAPLVLGKTILPPLLADFLHRYPQTS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L +   D+  D  D A+R   P Q  SLI R + +  M   AAP YL     P S 
Sbjct: 125 VELSLTDDYADLISDGYDLALRNGNPPQFDSLIARTVGSQQMLTCAAPGYLVQHGTPQSP 184

Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L  H  + F  G  + +    F          G  R S    ++  ++++  +   GI
Sbjct: 185 DDLAHHQCLHFLHGGRVSRWR--FQQKGKETTFQGSGRFSA---DNGEALLELALSAFGI 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y+V+   D+ +L  ++ D  +    V   YP   + + K++A  + +
Sbjct: 240 VQLPHYLVQTALDSGSLKSVLNDFQSKPVPVMAVYPSRKQLSPKVRALVDMM 291


>gi|91779249|ref|YP_554457.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691909|gb|ABE35107.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 334

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 3/205 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q  + KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPSLSEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y++    P S+++L+
Sbjct: 127 LTDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPDYIERAGMPSSLEDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD 212
            H  + +     +     +W   VD
Sbjct: 186 NHKAVNY--FSSRTGRTLDWAFMVD 208


>gi|152970457|ref|YP_001335566.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955306|gb|ABR77336.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 295

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 127/267 (47%), Gaps = 7/267 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F VVAR  SFT AA QL +SQS++S  +  LET + ++L  R  R +  TE G +L +  
Sbjct: 12  FMVVARERSFTRAAAQLGVSQSALSHAMRHLETRLDVRLLTRTTRSVVPTEAGERLIQRL 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                ++E     L+++  +P+G LRI         +L   LK F+L YPDI I++ +DN
Sbjct: 72  GPHLEEIEQALAALRDTRERPAGNLRITAGEHAASAVLWPALKPFMLQYPDINIEITVDN 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              DI  D  D  +RL + +    +  R    + M    +P YL+    P +  +L +H 
Sbjct: 132 GLTDIVGDRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSPAYLQRAGTPQTPWDLAQHR 191

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV 249
            I     +P     + W    D    + R+   L +NS    +     G G+A +PD  V
Sbjct: 192 CINL--RLPTRGGLYAWEFARDGREIQVRVEGQLLLNSLPQRIDAAEAGLGLAYVPDDCV 249

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCY 273
            +   +  LVR++ +  TP+F  Y  Y
Sbjct: 250 AEALASGRLVRVLAE-WTPAFPGYHLY 275


>gi|89074606|ref|ZP_01161071.1| transcriptional regulators, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89049544|gb|EAR55104.1| transcriptional regulators, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 299

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 140/261 (53%), Gaps = 8/261 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V ++ SF+  A + + +Q++IS++I+ LE ++  KL  R +R L LTE G++ +
Sbjct: 7   MRAFIRVVQTESFSATAREQNTTQATISKKIAALEHKLEGKLLTRSSRDLALTEVGAEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+  +  ++     P G ++IA  I  G   +   + EFL  YPDI + L 
Sbjct: 67  ERCVAIISELDEAESNVRAHRALPQGVIKIAAPITFGNIFIAPIISEFLARYPDISVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +K +DI  +  D AIR R+ ++ SSLI R L        A+  Y+    EP++ ++L+
Sbjct: 127 LSDKHVDIISEGVDVAIRARE-LEDSSLIARHLFDNPNILVASSAYIAKYGEPVTPEDLN 185

Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +HN I +   +   M ++N+    + + +        + +S  +I++  + G GIALLP 
Sbjct: 186 QHNCIIYS--LSSTMNNWNFYNKKIKKSVSVS--GNFKSDSCDAILRSVLDGVGIALLPV 241

Query: 247 YIVKDNPNLVRIMEDVITPSF 267
           ++V++  N  RI +  + PS+
Sbjct: 242 WMVENEINAGRIKQ--LMPSY 260


>gi|262375255|ref|ZP_06068488.1| transcriptional regulator [Acinetobacter lwoffii SH145]
 gi|262309509|gb|EEY90639.1| transcriptional regulator [Acinetobacter lwoffii SH145]
          Length = 299

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 142/295 (48%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F  V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLSDLDDFYCFAQVVEHGGFSAAERATDIPKSKLSRRVFNLEERLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    +    +     +   S +P G ++++  + + QN L   L  FL  YP
Sbjct: 61  DIGMNIYRHAQVMLSAAQAAHDLVDHLSTEPRGTIKVSLPVSIAQNELAKILPNFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++Q+++ N+ +DI  +  D A+R+R  +    +L+ R+   I  H +A+  YL    E
Sbjct: 121 EIKVQMMITNRRVDIINEGFDLALRVRSSLDDDPNLVIRQFEKIEQHLFASQGYLNEFGE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLG 238
             + ++L +H +++  +      E F  L    +   + R+S   + S L+++ Q    G
Sbjct: 181 LKNPEQLAEHKILSMAE---DHTEQFLTLQNEQQEQKKIRVSPTVMGSDLNMLAQLAASG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           SG+ LLPD +V+    +  LVR++ D   P    +  YP      G L A R FI
Sbjct: 238 SGVTLLPDNVVEQYVASGELVRVLPDWKAPHGIFHVVYP---SRRGLLPAVRVFI 289


>gi|213972137|ref|ZP_03400227.1| transcription regulator protein [Pseudomonas syringae pv. tomato
           T1]
 gi|302062048|ref|ZP_07253589.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato K40]
 gi|302131888|ref|ZP_07257878.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213923114|gb|EEB56719.1| transcription regulator protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 297

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 130/274 (47%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L VF  VAR  SFT AA  L +SQS+IS  I  LE  +GI+L  R  RG + TE G
Sbjct: 5   DFNSLAVFITVARERSFTRAAAHLGVSQSAISHSIRSLEERLGIRLLTRTTRGASPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       Y  +ET    L E   KP+G +RI +      ++L   L   L  YPD+ 
Sbjct: 65  ERLLVSLVPYYEGIETEIAALGELRDKPAGTIRITSPDHAASSILWPKLSRLLPEYPDLT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +  + IDI  +  D  +R+   +    +  R    + M    AP Y  +  +P   
Sbjct: 125 LEINIGYRLIDIVAERFDAGVRIGDQVAKDMIAVRISPDLRMAVVGAPSYFAHRAKPQIP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
           Q+L  HN       +P     + W  + D      ++S   + ++   IM   + G G+A
Sbjct: 185 QDLTTHNCANL--RLPTHGGLYAWEFSKDGKALHVQVSGQMIFSNSPQIMAAALQGYGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
             P+ +V+   ++  L+R++ED  +P+F  Y  Y
Sbjct: 243 YAPEDLVQAYVEDGRLIRVLED-WSPTFPGYHLY 275


>gi|254255187|ref|ZP_04948503.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124900924|gb|EAY71674.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 299

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 140/296 (47%), Gaps = 16/296 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE
Sbjct: 3   NMELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P 
Sbjct: 63  SGHEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P 
Sbjct: 123 VRLNLDLTDRRVDVIGEGFDLVLRI-GALEDSTLIARPLGAWKMIACASPAYLKRRGTPA 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVL 237
           +  +L  H  + +G           W   VD   G  R   +Q     N+   +    + 
Sbjct: 182 TPADLAGHTCLLYGR-----ERRVGWEFRVD---GAARTFGVQGPLVANNGEVVRDAAIA 233

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIALLP +IV    +   LV +++       T+   YP+  +    L+ F  F+
Sbjct: 234 GLGIALLPHFIVGAAIERGALVPVLDAYAPSPITLNAVYPQHREGFVTLRTFIGFL 289


>gi|115358237|ref|YP_775375.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283525|gb|ABI89041.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 293

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 132/283 (46%), Gaps = 7/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR+G+   AA QL++ Q+++ R+I+ LE E+  +LF R      LT  
Sbjct: 1   MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPALYVLTTA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +     T +  +     + +G +RIATT  LG+  +   +      +  I
Sbjct: 61  GEALLEPAETMERASLTIERRVMGLDEQLAGTVRIATTDSLGKRFVIPAIARLRRRHAGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  +   +  +++   AD AIR  +P +S  LI R+L  +    YA+ HYL    EP++
Sbjct: 121 DVVCVTSTEIANLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRHYLAERGEPVA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D H+L+ +   +   M    W A    P    R+   Q +S + +++  + G GIA
Sbjct: 180 GSAFDGHDLVMYQQPVMPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEAALAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            LP +  +  P LVR+M       F V+      L  T +++A
Sbjct: 235 ELPCFRAEAEPELVRLMARRCN-HFDVWLVAHADLYKTARVQA 276


>gi|323491937|ref|ZP_08097106.1| Transcriptional regulator, LysR family protein [Vibrio brasiliensis
           LMG 20546]
 gi|323313795|gb|EGA66890.1| Transcriptional regulator, LysR family protein [Vibrio brasiliensis
           LMG 20546]
          Length = 298

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 146/286 (51%), Gaps = 24/286 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V   GSFTHAAE L++++S++SR++  LE  +G++L  R  R L LT +
Sbjct: 1   MDLNAVTVFAQVVDCGSFTHAAETLNMTKSTVSRKLVELEQHLGVRLITRSTRSLVLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K ++ + ++   +   ++E+  +     G L +   ++LG  +L   + +FLL YP +
Sbjct: 61  GEKFYQSSLQMLEIINQAELEVSANQDLVRGPLNVVLPVELGHQVLGSYIHQFLLDYPHV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L N+++DI  +  D   ++   ++ S+L+ R L +      A+P YL    +  S
Sbjct: 121 TMNLELSNREVDIIGEGIDLYAQIGD-LEDSNLVSRYLTSSKRALVASPKYLAQYGDITS 179

Query: 183 IQEL-DKHNLITFGD---------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
            Q+L   H+++   +         L P   E ++    +D P        L+VN+  + +
Sbjct: 180 HQDLVSPHHMVEVFNKAARLPKWHLQPDTGESYH----IDLP------HRLRVNTITACL 229

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           + C+ G GIA+LP++I +++     LVR++     P   V   Y +
Sbjct: 230 KACIDGLGIAVLPEFICREHFASGALVRLLPQYKMPEVQVSLVYAD 275


>gi|323170995|gb|EFZ56644.1| hypothetical protein ECLT68_4317 [Escherichia coli LT-68]
          Length = 304

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 144/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AA QL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAVQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +I +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|322830851|ref|YP_004210878.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166052|gb|ADW71751.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 313

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 137/291 (47%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA   +FT AAE L L + S+SR +  LET +  +L +R  R + LT+ G   +
Sbjct: 21  MQVFVRVAELSNFTRAAESLGLPKGSVSRLVQQLETRMSARLLHRSTRRVQLTQDGQVFY 80

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   ++  +   Q +    SG+LR+  T  +  +L+   L EFL  YP ++I+L 
Sbjct: 81  QRCKELLASMDELESMFQSNPASVSGRLRVDMTTGMATHLVLPRLAEFLNRYPALEIELS 140

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+  +  DC IR    ++ S LI R L  + M   A+P YL+    P    +L 
Sbjct: 141 CTDHRVDVVREGFDCVIR-SGTLKDSGLIARPLGHLSMVNCASPGYLRRYGTPDHPDQLA 199

Query: 188 KHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H ++ +  ++      F +L      TV           + VNS  + +  C+ G GI 
Sbjct: 200 QHAMVHYEQILGSHTSAFEYLDGKQVKTVKSG------GAVTVNSTETYVSACINGLGII 253

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P   V+D      LV I+     P   V   YP  L  + ++K F +++
Sbjct: 254 QVPLIGVRDALAGGQLVSILPQFRAPPMPVTLVYPHRLNLSRRVKVFMDWL 304


>gi|323528747|ref|YP_004230899.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385749|gb|ADX57839.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 303

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 131/287 (45%), Gaps = 9/287 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+  SF+ AA  L +  S++SR+++ LE  +G+ L  R  R L+LT QG
Sbjct: 6   DLNDIAVFVRVAQFESFSRAARALGMPVSTVSRKVTALEVRLGVTLLQRTTRKLSLTSQG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  SE    L   +  + ++  KP G LRI+  + L Q    G L  FL  YP IQ
Sbjct: 66  RAYFDECSEPLSHLYDAERVITQTQKKPEGVLRISGPVMLEQEPFYGFLSAFLKDYPQIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   N  ID+  +  D AIR  + +Q SSL+ +++         +  Y +N   P   
Sbjct: 126 VDLYFTNAFIDLIAENVDVAIRFGE-LQDSSLVAQRVGRSVRQLVVSADYARNHPLPSRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL +H  +    LI     +  W     R     R+S  +    +  +  + + G GIA
Sbjct: 185 DELSQHPCV----LINARNNETEWHLVSGRKAARVRVSGPVAARDFHIVNAFALRGHGIA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LLP         +  LVR++ +  +P   V+  YP       KLKAF
Sbjct: 241 LLPSSYCDPHIASGELVRVLPEWSSPEIFVHAVYPTRRFMPSKLKAF 287


>gi|295676855|ref|YP_003605379.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436698|gb|ADG15868.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 300

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 137/288 (47%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QIETFATVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H ++  +  +    VK SG LR++     G+  +   +  F + +PD+ I L
Sbjct: 66  LEDCQRILHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P S+ EL
Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLAENRRVCVASPAYLNRRGAPHSLAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +  G       +   W+   D  +   ++S  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLALG---ASANQQRGWMFQQDGKVVSIKVSGTMECSDGAVLHEWCLAGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGADLAAGRLVTVLDEFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|221212215|ref|ZP_03585193.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168300|gb|EEE00769.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 335

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 142/296 (47%), Gaps = 11/296 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 28  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDTRLFQRTTRSMSLTREGELFYEN 87

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LRI +T   G+ ++   L++F   YPDI ++L+L
Sbjct: 88  CRPGIDHLAQALEDMRELRSGPPSGHLRIGSTPGFGRKVIAPLLRDFHARYPDISLELLL 147

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +D S D  D A R  + ++ S+++ R+L+ + M   A+P Y      P  + EL +
Sbjct: 148 NDRPVDFSADRIDVAFRDGR-MEDSAIVARQLIPMQMIVCASPAYAHRYGLPRHVDELAQ 206

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDY 247
           H  I       +  E   W   VD    + +++     + + ++   VL G GIA LP Y
Sbjct: 207 HRCINLRTASGRVKE---WEFKVDGLAQQAQLAAHHTFNDMDLVVRAVLDGLGIAQLPAY 263

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298
            V D   +  LV  +          Y CY        +++AF +++    +ARD +
Sbjct: 264 QVCDLLADGQLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRAFIDYMIEQTRARDLQ 319


>gi|226945847|ref|YP_002800920.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226720774|gb|ACO79945.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
          Length = 297

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 18/290 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  V R GSFT AA QL +S S++S  I GLE  +G++L  R  R ++ TE G
Sbjct: 5   NFNDLLAFVRVVREGSFTRAAAQLGMSPSALSHAIRGLEARLGVRLLTRTTRHISTTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  +  ++     L E   +P G +RI T      ++L   L E L  YPDIQ
Sbjct: 65  ERLFQGVAPRFEAIDARLAGLAEFRDRPVGTVRITTAEHAANSILWPKLSEVLREYPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D +  DI     D  +RL   +    +  R    + +    +P Y     EP + 
Sbjct: 125 VEVTVDYRLADIVAQRYDAGVRLGDQVAKDMIAVRIGPDLRIAIVGSPAYFATRSEPETP 184

Query: 184 QELDKHNLI-----TFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            +L  HN I     T G L+P    DF  +    V R  G+        NS   I++  +
Sbjct: 185 MDLAGHNCINLRLPTHGGLLPW---DFGKDGKEIVARVGGQ-----WTFNSSEPILRAAL 236

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            G G+A LP+ +  ++     LVR+++D   P    +  YP   +++  L
Sbjct: 237 AGHGLAFLPEDMALEHIAAQRLVRVLDDWCQPFPGYHLYYPSRRQSSRAL 286


>gi|323499389|ref|ZP_08104365.1| Transcriptional regulator, LysR family protein [Vibrio sinaloensis
           DSM 21326]
 gi|323315574|gb|EGA68609.1| Transcriptional regulator, LysR family protein [Vibrio sinaloensis
           DSM 21326]
          Length = 298

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 142/279 (50%), Gaps = 10/279 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V   GSFT AAE L +++S++SR+++ LE  +G++L  R  R L LT +
Sbjct: 1   MDLNAVNVFTQVVDCGSFTQAAESLGMTKSTVSRKLAELEQHLGVRLITRSTRSLILTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++ + ++   +   ++E+  +     G L +   ++LG  +L   + +FL+ YP +
Sbjct: 61  GERFYQSSQQMLEIMTQAELEVSANQDLIRGPLSVVLPVELGHQVLGSYINQFLVQYPHV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L N+++DI  +  D   ++ + ++ S+L+ R L        A+P YL    E  S
Sbjct: 121 TMNLELTNREVDIIAEGIDLYAQIGE-LEDSNLVSRYLAASKRALVASPDYLNQFGEIHS 179

Query: 183 IQELDK-HNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +L   H ++   ++  K +    W   A   + I       L+VN+  S +Q C+ G 
Sbjct: 180 HHDLTAPHQMV---EVFNKAVRLPKWHLQAENGQSIQIDLPHRLKVNTITSCLQGCIAGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           GIA+LP++I  ++     LVR++ D   P   V   Y +
Sbjct: 237 GIAVLPEFICLEHFATGKLVRLLPDYKMPEVGVSLVYAD 275


>gi|330807899|ref|YP_004352361.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376007|gb|AEA67357.1| Putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 304

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 134/275 (48%), Gaps = 9/275 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L  F V+ ++GSFT AA+QL  S+  +S++IS LE    + L  R  R L+LT  G
Sbjct: 3   EMDDLAAFAVLMKAGSFTQAAQQLGCSKGQLSKRISLLERRFSVVLLQRTTRRLSLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +  ++E  +  L       SG +R+   + LG+   +G L EF   YP++Q
Sbjct: 63  AALLPQAQALLVQVERARQALARLKDDISGPVRMTVPVSLGETFFEGLLMEFARTYPNVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L+N   D++ D  D AIR    I    L+ R L+  H    A+P YL+   EP + 
Sbjct: 123 IELELNNGYRDLTRDGFDLAIRSDAAI-DERLVARPLLAWHEMTCASPAYLERYGEPETP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242
           Q L +H  +    L         WL      +   R+S    +++ S+++   L G+GIA
Sbjct: 182 QALAEHRCL----LNSHYSGREEWLYHQQHELLRVRVSGPFASNHYSLLKKAALAGAGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            LP Y++ +   +  L  ++ D  T    +Y  +P
Sbjct: 238 RLPSYLLHEELADGRLHWLLRDYQTRRMPMYLVHP 272


>gi|327191164|gb|EGE58208.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 294

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 140/289 (48%), Gaps = 10/289 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA   SF  AA+ L +S  ++SR +S LE  +G +LF R +R L LT+ G +L   
Sbjct: 1   MFAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFGLRLVDS 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + +Y + E  +   +E + +P G +R+A  +D G   L   L +F  L+P++ I L + 
Sbjct: 61  AARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEVSIDLHMS 120

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +DI  D  D A+R+   +  SSLI R+L  +     AAP YL     P   +EL  H
Sbjct: 121 DAVVDIVGDGFDAALRI-AVLPDSSLIARRLTPVDRFILAAPAYLDRYGVPEHPRELAAH 179

Query: 190 NLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           + + +     +  +D   L   +    +  P  S    NS + ++   + G GI  LP++
Sbjct: 180 HCLGYAY---RARQDVWRLRNGEGREEVVVPSGSLRATNSEV-LVPMALRGLGIIELPEF 235

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  D   +  L  I+ D   P+  +YF  P A     K++   +F+  +
Sbjct: 236 LAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLSDFMMAR 284


>gi|295689351|ref|YP_003593044.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295431254|gb|ADG10426.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 300

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L VF  V    SF  AA++L +S++++S+ ++ LET +G +LF R +R L LT+ G
Sbjct: 6   DLEGLAVFAKVVELRSFAAAADELAMSKATVSKAVTRLETRLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    + V  + +  + E    S  P G +R+A  + LG   L   L  FL  YP++ 
Sbjct: 66  QSLVERATRVLAEAQAAEEEASSQSSAPRGLVRMAVPMSLGITTLGPVLPAFLEAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  ID+     D A+R+   +  SSL+ R+L  +  H  A+P Y      P   
Sbjct: 126 IDLNLSDATIDLVGMGFDLALRVAD-LPDSSLVARRLRPVKRHLVASPAYWDRHGRPHHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +T+G       E + +    +     PR S ++ N+   ++   + GSG+A+
Sbjct: 185 ADLAQHRGLTYGHQ--SAPETWRFQKGSEEAAVRPR-SVIRANNGDVLLPALLAGSGVAM 241

Query: 244 LPDYIVKDNPNLV-RIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPD+IV   P +   ++E+V+T        ++   P       +++A   +I
Sbjct: 242 LPDFIV--GPAVADGLLEEVLTDWQRAPIALHLVMPPGGPRPARVEALAAYI 291


>gi|91794313|ref|YP_563964.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91716315|gb|ABE56241.1| transcriptional regulator, LysR family [Shewanella denitrificans
           OS217]
          Length = 303

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 143/294 (48%), Gaps = 17/294 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA ++   +S+ISR+++ LE ++G++L  R  R ++LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAAREVGQPKSTISRKVAQLEEQLGVRLLQRDTRNISLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +    +  ++E  +  ++ +    SG LR+A  +   Q+++      F+ LYP+I+
Sbjct: 63  ALFFQHCDSISQEIEAAKAIIENTHNDISGALRVAIPVSFSQDVIASLCSNFMRLYPNIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+QSS L+ + L        A+P Y+KN   P + 
Sbjct: 123 LDIQFTDNDVGLVGEGYDIAIKY-GPLQSSDLVAKLLFERQPILVASPSYIKNHGTPATP 181

Query: 184 QELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           QEL +HN I  G  +     P        +AT +R +        +VNS   + +  +  
Sbjct: 182 QELAQHNGILLGTTLSAPIWPLGKGGRKTMATFNRKV--------RVNSASMVKRLAIDA 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GIA+L +   K    +  LV I+++     F VY  Y    +    + AF  F
Sbjct: 234 YGIAMLSNTSCKQELASGALVPILQEWPMEPFKVYGVYSSRRQLATNISAFLEF 287


>gi|288935439|ref|YP_003439498.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890148|gb|ADC58466.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 306

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 22/294 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+D+L  F  VA +GSF  A+ +L    S ISR++S LE ++G++L  R  R +TLTE G
Sbjct: 4   DFDELMAFVCVAEAGSFIGASLRLERDASVISRRVSHLEKKLGVRLLVRTTRSVTLTEAG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +       +L     E+ + +  P G LR++  +  G+ L+     +FL  YPDI+
Sbjct: 64  TWFLQRARTALDELSAASREVGDFAATPQGTLRVSLPVTFGRELIAPMFPDFLQAYPDIR 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +     ++ +DI  +  D  IRL   ++ S+L  R+L        A+P YL+   EP   
Sbjct: 124 LDAHFLDRRVDIVAEGFDAVIRLGN-LRDSTLTGRELGAFRSQLIASPAYLQRYGEPTHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFN-WLATVDR------PIGEPRISCLQVNSYLSIMQYCV 236
           ++L  H  + F         D+  W+    R      P G      L  N   +++   +
Sbjct: 183 EQLAAHRCLGF-----THHPDWPYWILENGREHIQVTPAGP-----LTTNISEALLTAVI 232

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAF 286
             +GIALLP ++V        LVR++ D  + +  +VY   P       K + F
Sbjct: 233 RATGIALLPGWMVNQAVQCGELVRVLPDWRSAARVSVYALMPPGTLVPAKTRVF 286


>gi|262395721|ref|YP_003287574.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262339315|gb|ACY53109.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 328

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 143/287 (49%), Gaps = 12/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAEQL +S+S +SRQI+ LE ++G  L  R  R L LTE G  L+
Sbjct: 36  IRSFVLIAQLGNFTKAAEQLGVSRSHVSRQITNLEQQIGATLLQRTTRTLKLTEAGKVLY 95

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           +      H ++   + + +   +  G++RI      LG++++   + +FL+ +P + I L
Sbjct: 96  KQCETALHNIDQAVMAVVDDVEELRGEIRINCVGGYLGEDVVADIVAQFLIQHPQVNINL 155

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+ K +  S+ I RKL+ + M  YA+P YL+    P   ++L
Sbjct: 156 DFSSHRVDLIADEFDIAFRMGK-LDDSNFIARKLIDVEMGTYASPSYLETHGYPSHPKDL 214

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +KH  +T G +     E+ N   + +  I G+ R    +V     +++  + G+GI  +P
Sbjct: 215 EKHICLT-GSVTRWAFENTNTKQSTEHQIRGQLRCKSGRV-----MIKAALAGNGIIRVP 268

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               +       L  +  D   PS      Y        +++AF +F
Sbjct: 269 ALYCQQELQTGKLKEVFTDWSIPSVEFSLLYHHDRHQPKRIRAFIDF 315


>gi|207728272|ref|YP_002256666.1| hypothetical protein RSMK04668 [Ralstonia solanacearum MolK2]
 gi|206591518|emb|CAQ57130.1| hypothetical protein RSMK04668 [Ralstonia solanacearum MolK2]
          Length = 284

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 137/293 (46%), Gaps = 17/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V ++  F  AAE + +  S++SR+I  LE  +G++L +R  R + LTE G    
Sbjct: 1   MALFVEVVKAKGFRSAAEAMGIPNSTLSRRIGTLEKAIGLRLLHRTTRKIELTEAGQLYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +      +L E   +PSG LR +  +D     L   + EF  LYP I     
Sbjct: 61  ERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFAGLYPGITFDFD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +D+  +  D AIR+  P + S LI R L ++  H YA+P YL    EP    +L+
Sbjct: 121 LTPRRVDLVSEPFDVAIRM-GPSEDSQLIARPLASLTPHLYASPGYLDRSGEPHKPADLE 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  ++        ++D    ATV   +G        +NS   I +  VL  GI L+P+ 
Sbjct: 180 RHECLSILKAGSWTLQDGKRTATVS--VG----GRFTLNSVGMIRRLAVLDLGIVLMPEE 233

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA-FRNFI-FLKAR 295
           IV D   +  L RI+      S  VY     A+  T  L A  + FI FL+AR
Sbjct: 234 IVADELASGKLRRILPGWHGTSMPVY-----AITETRLLPAKTQRFIEFLRAR 281


>gi|170699220|ref|ZP_02890272.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135880|gb|EDT04156.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 306

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 137/283 (48%), Gaps = 7/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A  GS++ AA  L ++ S++S+ I  LE    +KLF R  R LTLT++G +LH
Sbjct: 12  LIAFSRAASLGSYSAAARALGVTPSAVSKSIQRLEQHFELKLFNRTTRSLTLTQEGRELH 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +  ++E  +     +  +P+G L++   + +G +L+   L  F   +P + I L 
Sbjct: 72  ERTLRLLAEMEAIEQAAVSARSEPAGTLKVTAPLPIGIHLIAPALPAFRKRFPKLSIDLR 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D AIR+   +  S LI R+L   H+ AYA+P YL     P    +L 
Sbjct: 132 LGDHFVDLVGEGVDVAIRVGD-LSGSRLISRQLSPHHIGAYASPDYLARRGVPKHPDDLV 190

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F        + F W   T    +     + + V++  ++    V G G+ + P 
Sbjct: 191 DHDCVNF--RFQSSGQVFRWNFVTGHGSLDLIPDAGIVVDTSDAVAAVMVAGGGVGITPA 248

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           Y+         LV ++ + + P  T+   +PE+ +++  +KAF
Sbjct: 249 YVAASYVKRGELVPLLTEFVEPRSTITALWPESRRSSPNVKAF 291


>gi|90411107|ref|ZP_01219120.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
 gi|90327953|gb|EAS44274.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
          Length = 294

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 143/290 (49%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA+  SF  AA  L +S+S++S++++ LET +G++L +R  R ++LTE G  
Sbjct: 5   DAIPYFLAVAKHESFAEAARHLDVSRSAVSKRVNQLETSLGVRLLHRTTRKVSLTEAGKH 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   Y+ ++  +         P GKL++   +  G+  +   +  FL  YP ++I 
Sbjct: 65  YLINAQNAYYWIQQAEDAATSRQRSPIGKLKVCVPMSFGRLKIAPLIPGFLKKYPQVEID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +++D++  DI     D AIR  + +  SSLI RKL+       A+  YL     P +  +
Sbjct: 125 MVMDDRYSDIVDAGFDVAIRGGE-LADSSLIARKLMPSRSLICASSAYLDGKTLPTTPID 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +HN + +        +   W+      I    +    +VN+  ++++ C+ G G+  L
Sbjct: 184 LTEHNALIYS----YSAQTTEWVFEYQDHIETVAVRGNYRVNNSEAVLEGCLQGIGVGRL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           PD+I K   DN  L++++ +   P   ++  +PE      K++ F ++++
Sbjct: 240 PDFIAKPYIDNGELIQLLSEYKMPEKNIWAVFPERTYMPVKVRIFIDYLY 289


>gi|167901464|ref|ZP_02488669.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           NCTC 13177]
          Length = 315

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAETLGMPRASVTTTIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 67  EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290


>gi|218529137|ref|YP_002419953.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218521440|gb|ACK82025.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 297

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 127/275 (46%), Gaps = 10/275 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR+GSFT AA QL +SQ ++S+ + GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLVAFVAVARAGSFTKAAAQLGVSQPALSQTVRGLEARLGVRLLARTTRSVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       + ++E     L E   K +G +RI       Q++L   L+  L  YPDI+++
Sbjct: 67  LLNAVGPRFDEVEEGLAGLAEMRGKAAGTVRITADEHAAQSVLWPVLRRLLPDYPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++D    DI  +  D  IRL   +       R    + M A AAP Y     +P    +
Sbjct: 127 TVVDYGLTDIVAERIDAGIRLGGTLARDMTAVRIGPDLRMAAVAAPSYFAARSKPERPDD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H  I     +P     + W    ++   E R+     L  N+   I++  + G GIA
Sbjct: 187 LTAHTCINL--RLPTHGGLYAW--EFEKGGRELRVWVEGQLVFNTITLILEAALDGFGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            LP+  V+ +     LVR++ED   P    +  YP
Sbjct: 243 YLPEDGVRAHLAAGTLVRVLEDWCEPYSGYHLYYP 277


>gi|114048997|ref|YP_739547.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113890439|gb|ABI44490.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 317

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L L+++++SR+I+ LE++ G +L +R  R L LTE 
Sbjct: 1   MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   +++   L++ + +L        G L+I   I+LGQ  L     +FL LYPDI
Sbjct: 61  GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++      + L    LV  +    A+P YL     P  
Sbjct: 121 TIEAELTNRKVDVIEEGIDLLFQIADS-SDTRLQSYSLVNAYKSLMASPSYLAEHGTPKV 179

Query: 183 IQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            Q+L KH  I      I    + F+  + V   + EP ++ L VN+     +  + G GI
Sbjct: 180 PQDLAKHKAIRLQSAHIEGAWKLFDGQSWV---VIEP-VTQLTVNNVTIAREAAIAGLGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +P  I +   +   LV +++D       V   YP+      K + F  FI+
Sbjct: 236 TAVPSIIAQEAIEKGYLVSLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIY 288


>gi|319795068|ref|YP_004156708.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597531|gb|ADU38597.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 339

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 146/288 (50%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  VA   SF+ AA+ L +S++++SR ++ LET  G++L  R  R L+LT+ G  
Sbjct: 5   DLIKTFREVAFRRSFSRAADSLGMSKATVSRYVAELETRSGVRLLNRSTRSLSLTDAGQV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   ++E+    E T  +LQ     P G+LR++    +    L   +  F+ LYPD+ + 
Sbjct: 65  LLDRSTELVAMAENTLNDLQAHGSHPRGRLRMSAPNGMIAGWLSDVMAAFINLYPDVYVS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+  N+DID+  +  D  +   + I   +LI R+LV   M   A+P Y      P   ++
Sbjct: 125 LVFTNRDIDLIEEGIDIHLTGGR-IDDMNLIVRRLVQYDMVVCASPAYWARRGIPQVPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + +H+++++  + P     F    T  RP      S ++ N  +++++  + G G+A +P
Sbjct: 184 VGRHDILSYASM-PTTHLPFE---TDGRPHEVAVHSRMEANDAMALIELALRGVGVAYVP 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + +   +   LV ++ + +     +Y  Y +   N+  ++A  +F+
Sbjct: 240 EPLAQSHLERGALVPVLREHMPRDHWLYAAYSQRRHNSAAMRAMLDFL 287


>gi|262171939|ref|ZP_06039617.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|261893015|gb|EEY39001.1| transcriptional regulator [Vibrio mimicus MB-451]
          Length = 266

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 132/263 (50%), Gaps = 9/263 (3%)

Query: 32  SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91
           ++I+R+I  LE  + ++L  RHAR LTLTE G + ++  S +  +L +   E+ +     
Sbjct: 5   ATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGA 64

Query: 92  SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151
           SG++RI+   +L + ++      F+  YPDI I+L++ N+  D+     D   R+  P +
Sbjct: 65  SGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRV-GPQR 123

Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211
            SSLI RK+  +     A+P YL N  +P   +EL +H L+    L+   + +      V
Sbjct: 124 DSSLIARKIGEVKDILVASPTYLANHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETVV 183

Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFT 268
           +   G  + S L V     +   C  G GI L+PD +++   D+ +LV+++ D  +    
Sbjct: 184 NTDRGRFQASALNV-----VRSACSEGLGITLMPDVMLREYLDDGSLVQVLSDWSSNPRD 238

Query: 269 VYFCYPEALKNTGKLKAFRNFIF 291
           +Y  Y        K++ F +F+ 
Sbjct: 239 IYMLYNHKDHQPEKVRLFIDFVI 261


>gi|221212071|ref|ZP_03585049.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168156|gb|EEE00625.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 304

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 145/298 (48%), Gaps = 31/298 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF +VAR  SF+ AA+ L +S S +S+++  LET +GI+L +R  R +++T+ G +++
Sbjct: 13  LRVFCMVARKASFSAAADALAMSSSYVSKRVGMLETSLGIRLLHRSTRRVSVTDAGERVY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E    ++  +   P G LR++++   G+N++   L E    +P + ++L 
Sbjct: 73  AWAEKILDDVEHLVEDVSSTRRVPRGTLRVSSSFGFGRNVVAPALAELSDRHPQLNVRLE 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D++ +  D  IR+   I +  LI ++L T H    A+P YL     P  + +L 
Sbjct: 133 LFDRIVDVAAEGFDVDIRIGDEI-AGHLIAKQLATNHRVLCASPDYLARHGTPKQVDDLA 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLS------IMQYC 235
            H  +   +               D P G  R+        +QV   LS       +Q+ 
Sbjct: 192 SHACLAIKER--------------DHPFGVWRLDARGETVSVQVTGPLSSNHGEVAVQWA 237

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GI L   + V+   D   L R++  V  P+  V+  YP  L  + K++A   F+
Sbjct: 238 LAGRGIVLRSVWDVQPLLDAGRLQRVLPGVTQPA-NVWAVYPARLAQSAKVRACVEFL 294


>gi|254506911|ref|ZP_05119050.1| AphB/LysR family protein [Vibrio parahaemolyticus 16]
 gi|219550196|gb|EED27182.1| AphB/LysR family protein [Vibrio parahaemolyticus 16]
          Length = 266

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 127/263 (48%), Gaps = 9/263 (3%)

Query: 32  SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91
           ++I+R+I  LE  + ++L  RHAR L+LTE G + +   S +  +L  T  E+ +     
Sbjct: 5   ATITRRIQALEDSLNLRLLNRHARKLSLTEAGERFYSECSPLLDRLTLTAEEISDECRGA 64

Query: 92  SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151
           +GK+RI    +L + ++     +F+  YPDI ++L   N    +     D   R+  P +
Sbjct: 65  AGKIRITAPSNLTKRMMMPMFNDFMKQYPDINLELTTSNHSEQLDPTEWDVIFRV-GPQR 123

Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211
            SSLI RK+ ++     A+P YLK    P   +EL  H+L+    L+   + + N    V
Sbjct: 124 DSSLIARKINSVEDILVASPEYLKTNPAPKHAEELHNHSLLKGAPLLKWQLSNQNGETVV 183

Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFT 268
           +   G       Q N+   +   C  G GI L+PD ++K   D+ +LVR++ED       
Sbjct: 184 NNDKGR-----FQANALNVVRSACSDGLGITLMPDVMLKEFIDDGSLVRVLEDWSANPRD 238

Query: 269 VYFCYPEALKNTGKLKAFRNFIF 291
           +Y  Y        K++ F +F+ 
Sbjct: 239 IYMLYNHKDHLPEKVRLFIDFVI 261


>gi|26989680|ref|NP_745105.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24984568|gb|AAN68569.1|AE016488_13 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 292

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 140/291 (48%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R+F  V   GSF+  A +L++ Q ++S+Q+  LE  +G  +F R  R L LT+QG 
Sbjct: 4   FDSMRIFVRVVERGSFSAVARELNMGQPAVSKQVRALEQYLGGAVFARSTRHLALTDQGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    E+  +LE           + +G LRIA  +  G+  +   +  FL  +PD+QI
Sbjct: 64  RFYSHCQEILSQLEHATRSFASGQEQIAGPLRIAAPVSYGRLCIAPLIGAFLQRHPDVQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L++ + D+ M+  D AIR+   ++S  L+   L T     YAAP YL    +P    
Sbjct: 124 DLRLNDYNEDLLMENIDLAIRI-GLVKSEGLVAVPLGTSTRRVYAAPAYLDRHGQPREPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           EL  HN I F       +E ++ W  T      E  I   +  N+  +I +  + G GI+
Sbjct: 183 ELAGHNCIAF-----TLLEHYDRWHFTHRGEALEVAIKGNVTSNNSEAIREMVLGGLGIS 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L P ++     +   +  ++++  T +  V   +    + + +  AF +F+
Sbjct: 238 LSPQWLFAADFEQGGVCSLLDEYQTTALPVSAVFSRERRRSARTMAFIDFL 288


>gi|27382947|ref|NP_774476.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27356120|dbj|BAC53101.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 294

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 139/297 (46%), Gaps = 11/297 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  VA    F  AA +LHLS S+++R I+ LE  +G +L  R  R +TLT+ G++
Sbjct: 5   EAMHVFVTVADLRGFAPAARKLHLSPSAVTRLIAALEEHLGARLLQRTTRQVTLTDVGTR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +E      +E   +PSG+L ++  +  G+  +   +  +L  YP++  +
Sbjct: 65  YLERARRILADVEEADGSAREERNRPSGRLVVSAPVGFGRLHVGPVMTAYLKRYPEVAGE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +++  D  D A+R+   +  SSL+ R++  +     AAP YLK   EP + + 
Sbjct: 125 LRLSDHLVNLVEDAVDVAVRIGH-LADSSLVARQVGEMRRIVVAAPGYLKRHGEPKTPEA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I FG   P     F            PR++    NS  + +QY   G G+  + 
Sbjct: 184 LASHQTIQFG---PSASWHFMQDGRDIEVTTNPRLTS---NSADAALQYAEAGGGVTRVL 237

Query: 246 DYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            Y   +     R   ++     P+  ++  YP +   + K++AF + +   A +W+F
Sbjct: 238 AYQAAEGLKRGRLKVVLAKYEQPALPIHVVYPTSRLLSAKVRAFVDLVVETA-EWRF 293


>gi|192292236|ref|YP_001992841.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192285985|gb|ACF02366.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 315

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 135/290 (46%), Gaps = 7/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + +DW+ +  F  VAR  S   AA +L +  +++SR++  LE  +   LF R   G TLT
Sbjct: 8   IRYDWNDVVYFLEVARQRSLVRAAAKLKVDHTTVSRRVRELERSLNSTLFKRSKSGFTLT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L +    +  +  +    +   +    G +RIA    +G   L   + +F  +YP
Sbjct: 68  EIGMRLLQYAEGMESQANSIVEAIGTDTADAGGAVRIAAMEGIGSFYLTRCIADFNRIYP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQI+LI D + +D+S   AD  +   +P     L  +K+    +  YA   Y      P
Sbjct: 128 SIQIELITDTRLLDLSRREADIFVSFFRP-HGKRLSIKKVGEFRISLYATDAYFGGRSPP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL+ H  I F +      E+  WL+ V RP   P  +  +  S ++       G G
Sbjct: 187 TTVKELETHAFIDFIEDYIYSKEN-RWLSDVLRP---PH-TIFRSTSLVAQSIAVSAGQG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA+LP Y+   N  L  +M ++ T +  ++    E L +  ++KA   F+
Sbjct: 242 IAMLPSYVASGNAELFPVMPELFT-TRDIWLSVHEDLLHVARIKAVTTFL 290


>gi|254227673|ref|ZP_04921104.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151939715|gb|EDN58542.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 337

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 143/287 (49%), Gaps = 12/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAEQL +S+S +SRQI+ LE ++G  L  R  R L LTE G  L+
Sbjct: 45  IRSFVLIAQLGNFTKAAEQLGVSRSHVSRQITNLEQQIGATLLQRTTRTLKLTEAGKVLY 104

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           +      H ++   + + +   +  G++RI      LG++++   + +FL+ +P + I L
Sbjct: 105 KQCETALHNIDQAVMAVVDDVEELRGEIRINCVGGYLGEDVVADIVAQFLIQHPQVNINL 164

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+ K +  S+ I RKL+ + M  YA+P YL+    P   ++L
Sbjct: 165 DFSSHRVDLIADEFDIAFRMGK-LDDSNFIARKLIDVEMGTYASPSYLETHGYPSHPKDL 223

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +KH  +T G +     E+ N   + +  I G+ R    +V     +++  + G+GI  +P
Sbjct: 224 EKHICLT-GSVTRWAFENTNTKQSTEHQIRGQLRCKSGRV-----MIKAALAGNGIIRVP 277

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               +       L  +  D   PS      Y        +++AF +F
Sbjct: 278 ALYCQQELQTGKLKEVFTDWSIPSVEFSLLYHHDRHQPKRIRAFIDF 324


>gi|115352578|ref|YP_774417.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|170697665|ref|ZP_02888753.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|115282566|gb|ABI88083.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
 gi|170137413|gb|EDT05653.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 300

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 143/298 (47%), Gaps = 11/298 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD      + V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++   S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEEAAVDAGRSRARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P++ +++ + ++  D+  D  D A+R   P + SS   R L+  H+   A+  Y+   
Sbjct: 121 RFPELSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETHVLTCASAAYVARH 179

Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYC 235
            EP   ++L D H  +   D  P     + W     D  +       L VN   +++  C
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYGWEFHRGDEVVPFDATGRLTVNDTGALLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V G G+A L +   +D      LV+++ +    +F +Y  +  +   + K++ F +F+
Sbjct: 238 VGGEGVAQLLELYARDILAEGRLVQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFV 295


>gi|258544031|ref|ZP_05704265.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
 gi|258520728|gb|EEV89587.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
          Length = 299

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 141/292 (48%), Gaps = 10/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F    +SGSFT AA+QL L++S+I ++I+ LE  + ++L  R+ R L  T++G
Sbjct: 5   NLNDITAFVASVKSGSFTAAAKQLGLTRSTIGKRIARLEARLNVRLLQRNTRNLAPTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   + V  +L+  +  L + S+KP G+L+I+  + LG+ +L   L +FL  YP   
Sbjct: 65  RLFYERCTAVLEELDNAEQCLAQRSIKPQGRLKISAPLVLGKTILPPLLADFLHRYPQTS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L +   D+  D  D A+R   P Q  SLI R +    M   AAP YL     P S 
Sbjct: 125 VELSLTDDYADLISDGYDLALRNGNPPQCDSLIARTVAQQKMLTCAAPGYLVQHGTPQSP 184

Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L  H  + F  G  + +    F          G  R S    ++  ++++  +   GI
Sbjct: 185 DDLAHHQCLHFLHGGRVSRW--HFQQKGKETTFQGSGRFS---TDNGEALLELALSAFGI 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y+V+   D  +L  ++ D       V   YP   + + K++A  + +
Sbjct: 240 VQLPHYLVQAALDAGSLKSVLSDFQPKPVPVMAVYPSRKQLSPKVRALVDMM 291


>gi|161523039|ref|YP_001585968.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348135|ref|YP_001941331.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160346592|gb|ABX19676.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189338273|dbj|BAG47341.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 300

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 145/298 (48%), Gaps = 31/298 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF +VAR  SF+ AA+ L +S S +S+++  LET +GI+L +R  R +++T+ G +++
Sbjct: 13  LRVFCMVARKASFSAAADALAMSSSYVSKRVGMLETSLGIRLLHRSTRRVSVTDAGERVY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E    ++  +   P G LR++++   G+N++   L E    +P + ++L 
Sbjct: 73  AWAEKILDDVEHLVEDVSSTRRVPRGTLRVSSSFGFGRNVVAPALAELSDRHPQLNVRLE 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D++ +  D  IR+   I +  LI ++L T H    A+P YL     P  + +L 
Sbjct: 133 LFDRIVDVAAEGFDVDIRIGDEI-AGHLIAKQLATNHRVLCASPDYLARHGAPKQVGDLA 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLS------IMQYC 235
            H  +   +               D P G  R+        +QV   LS       +Q+ 
Sbjct: 192 SHACLAIKER--------------DHPFGVWRLDARGETVSVQVTGPLSSNHGEVAVQWA 237

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GI L   + V+   D   L R++  V  P+  V+  YP  L  + K++A   F+
Sbjct: 238 LAGRGIVLRSVWDVQPLLDAGRLQRVLPGVTQPA-NVWAVYPARLAQSAKVRACVEFL 294


>gi|238020448|ref|ZP_04600874.1| hypothetical protein GCWU000324_00330 [Kingella oralis ATCC 51147]
 gi|237867428|gb|EEP68434.1| hypothetical protein GCWU000324_00330 [Kingella oralis ATCC 51147]
          Length = 294

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V +SGSFT AAE+L++S    S+ +S LE  +G +L YR+ R L LTEQG   +
Sbjct: 7   MKVFCQVVQSGSFTRAAERLNISIPMASKHVSHLEKTIGAQLLYRNNRSLKLTEQGDAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R        L          +  P G LRIA  +    +     L  +   YPD++I+L 
Sbjct: 67  RDCQSALELLAQAAEHASAGANHPQGTLRIAAPVWFACDKFARMLAAYQSRYPDVEIELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D++ D  D A+RL   + + ++I ++L  I  +  A P YL     P + Q+L 
Sbjct: 127 LSNRHVDLNSDGEDLALRLSDSL-AENIIAKRLGNIPFYLVATPTYLARHGTPRAPQDLT 185

Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H  I  T+ DL  + M ++    TV  P+ E + S ++ N    +        GI  +P
Sbjct: 186 RHPAILPTYVDL-SRMMTEYQG-KTV--PL-EFQGSKMRSNHTQMVAALIRAHVGIGYMP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++  D+     L+R++ D    S   Y  Y        K+++F +F+
Sbjct: 241 AWLADDDITTGRLIRLLPDCPMSSPPFYAVYANRQYMKAKVRSFIDFM 288


>gi|148975480|ref|ZP_01812351.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145964908|gb|EDK30159.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 300

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 151/296 (51%), Gaps = 12/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V   GSFTHAAE L++++S++SR+++ LE  +G++L  R  R L LT +
Sbjct: 1   MDLNAVTVFTQVVDCGSFTHAAEVLNMTKSTVSRKLAELEQHLGVRLITRSTRSLILTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++ + ++   +   ++E+  +     G L +   ++LG  +L   +  FLL YP++
Sbjct: 61  GERFYQSSLQMQEIMNQAELEVSANQDLIRGPLNVVLPVELGHQVLAKYIHSFLLEYPNV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L N+++DI  +  D   ++ + +  SSL+ R L T      A+P YL+    P++
Sbjct: 121 TINLELTNREVDIIGEGIDLYAQIGELV-DSSLVSRYLTTSKRVLVASPKYLEQV-GPIN 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLG 238
             + D        +++ K      W   +    GE  +    S L+VN+  + +  CV G
Sbjct: 179 TPK-DIKTPFRMIEVVNKAARLPKWELQLGD--GESELIQLPSQLRVNTITACLTACVDG 235

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G+A+LP++I +++     LV ++ +   P  +V   Y +      + K F +++ 
Sbjct: 236 LGLAVLPEFICREHFKTGRLVNLLPEYDMPQVSVSLVYADRQLMPKRKKVFIDYLL 291


>gi|269966704|ref|ZP_06180782.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|269828695|gb|EEZ82951.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 328

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 12/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAEQL +S+S +SRQI+ LE ++G+ L  R  R L LTE G  L+
Sbjct: 36  IRSFVLIAQLGNFTKAAEQLSVSRSHVSRQITNLEQQIGVTLLQRTTRTLNLTEAGKVLY 95

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           +      H ++   + + +      G +RI      LG++++   + +FL+ +P + I L
Sbjct: 96  KQCETALHNIDQAVMAVVDDVEDLRGDIRINCVGGYLGEDVVADIVAQFLIQHPQVSINL 155

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+ K +  S+ I RKL+ + M  YA+P+YL+    P   ++L
Sbjct: 156 DFSSHRVDLIADEFDIAFRMGK-LDDSNFIARKLIDVKMGTYASPNYLETYGYPSHPKDL 214

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +KH  +T G +     E+ N   + +  I G+ R    +V     +++  + G+GI  +P
Sbjct: 215 EKHICLT-GSVTRWAFENTNTKQSTEHQIRGQLRCKSGRV-----MIKSALAGNGIIRVP 268

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               +       L  +  +   PS      Y        +++AF +F
Sbjct: 269 ALYCQQELQTGKLKEVFTNWSIPSVEFSLLYHHDRHQPKRIRAFVDF 315


>gi|259415674|ref|ZP_05739595.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259348904|gb|EEW60666.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 340

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 8/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LRVF  + R    T A + L + Q++ISR++  LE  +G  LF R A G  LT  
Sbjct: 43  FDWNDLRVFIALHRMRRMTDAGKVLGIDQTTISRRVRALEKAIGTSLFLRRADGFELTAA 102

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K+     E+    E     +   + + SG +R+     LG   L   L +F   +P +
Sbjct: 103 GEKILPFALEIEQASEQLHEAVSGQNKRLSGSVRVGAPDGLGTYFLPSILTQFQKDHPGV 162

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+++  ++   ++      A+ L  P +S  L+ RKL   H+H + +  Y+     P +
Sbjct: 163 DIEVVSSSRAFRVASKEVHLALSLSLP-ESGRLLARKLGDYHLHFFGSADYVSEHGVPQT 221

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + EL  H L+ +  D++      F+        +G  R      +S  +  +    GSGI
Sbjct: 222 LDELKDHRLVGYIADML------FSPEVRYLEELGLRRTVRFASSSMAAQKEAIRAGSGI 275

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LP ++  ++P+LV ++ +      TV+    +A ++  +++A   F+   AR
Sbjct: 276 GILPRFMALNDPSLVPVLTNEYLLKRTVWIVGHQATEDLARVRAVSEFLQKAAR 329


>gi|325527084|gb|EGD04503.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 294

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 132/284 (46%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G   +  
Sbjct: 9   AFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEGRHFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L   +  +  S+ +P GKLR++  + +G   L   L EF   YPD+++ L  +
Sbjct: 69  CQRILEDLRDAEATVSASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRARYPDVELDLDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + +EL  H
Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFGFVLCATPAYLARAGTPRTPRELAAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + +    P   +  +W    D        + +  N+  ++    + G GI  +PD++ 
Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +D      LV +++D           +P + + + KL+ F +F+
Sbjct: 245 RDALEQHALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288


>gi|221198951|ref|ZP_03571996.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205211|ref|ZP_03578227.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175002|gb|EEE07433.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181402|gb|EEE13804.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 300

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 145/298 (48%), Gaps = 31/298 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF +VAR  SF+ AA+ L +S S +S+++  LET +GI+L +R  R +++T+ G +++
Sbjct: 13  LRVFCMVARKASFSAAADALAMSSSYVSKRVGMLETSLGIRLLHRSTRRVSVTDAGERVY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E    ++  +   P G LR++++   G+N++   L E    +P + ++L 
Sbjct: 73  AWAEKILDDVEHLVEDVSSTRRVPRGTLRVSSSFGFGRNVVAPALAELSDRHPQLNVRLE 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D++ +  D  IR+   I +  LI ++L T H    A+P YL     P  + +L 
Sbjct: 133 LFDRIVDVAAEGFDVDIRIGDEI-AGHLIAKQLATNHRVLCASPDYLARHGTPKQVGDLA 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLS------IMQYC 235
            H  +   +               D P G  R+        +QV   LS       +Q+ 
Sbjct: 192 SHACLAIKER--------------DHPFGVWRLDARGETVSVQVTGPLSSNHGEVAVQWA 237

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GI L   + V+   D   L R++  V  P+  V+  YP  L  + K++A   F+
Sbjct: 238 LAGRGIVLRSVWDVQPLLDAGRLQRVLPGVTQPA-NVWAVYPARLAQSAKVRACVEFL 294


>gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072445|gb|ADJ61844.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 337

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 146/290 (50%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  V  + SFT AA+ L+L +++++  + GLE+ + ++L  R  R ++LT  G+
Sbjct: 4   FQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+ T+   +  +  P G+LRI     +G+ +L  NL +F   YPDI++
Sbjct: 64  AYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC IR+ + +Q SS++ R++ T      AAP YL+    P +I+
Sbjct: 124 MMGMGDRPVDLVQEAVDCVIRIGE-LQDSSMVARRIGTFQTVTCAAPAYLERHGVPHTIE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +H  + +     +     +W   V+    E +++  L VN   + ++  + G G+  
Sbjct: 183 DLQQHKAVHY--FSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P Y+V    D   LV ++         +   Y      + K++AF +++
Sbjct: 241 APLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWV 290


>gi|238894943|ref|YP_002919677.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|329999705|ref|ZP_08303480.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|238547259|dbj|BAH63610.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328538236|gb|EGF64382.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 295

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 126/267 (47%), Gaps = 7/267 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F VVAR  SFT AA QL +SQS++S  +  LET + ++L  R  R +  TE G +L +  
Sbjct: 12  FMVVARERSFTRAAAQLGVSQSALSHAMRHLETRLDVRLLTRTTRSVVPTEAGERLIQRL 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                ++E     L+++  +P+G LRI         +L   LK F+L YPDI I++ +DN
Sbjct: 72  GPHLEEIEQALAALRDTRERPAGNLRITAGEHAASAVLWPALKPFMLQYPDINIEITVDN 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              DI  D  D  +RL + +    +  R    + M    +P YL+    P +  +L +H 
Sbjct: 132 GLTDIVGDRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSPAYLQRAGTPQTPWDLAQHR 191

Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            I     +P     + W  A   R I       L +NS    +     G G+A +PD  V
Sbjct: 192 CINL--RLPTRGGLYAWEFARDGREIQVRVEGQLILNSLPQRIDAAEAGLGLAYVPDDCV 249

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCY 273
            +   +  LVR++ +  TP+F  Y  Y
Sbjct: 250 AEALASGRLVRVLAE-WTPAFPGYHLY 275


>gi|99081589|ref|YP_613743.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037869|gb|ABF64481.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 303

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 144/290 (49%), Gaps = 18/290 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW+++R F   A  GSF+ AA  L+ +Q ++ RQ+  LE  +G+ +F R  + L LT
Sbjct: 10  INFDWNQVRSFLATAEEGSFSAAARVLNQTQPTVGRQVGALEEALGVTVFERVGKSLRLT 69

Query: 61  EQGSKL--H-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             G++L  H R  ++V +K+  T    Q  SV+  G++RI  +  +    L   LK+  L
Sbjct: 70  TAGTELLVHVREMADVANKISLTATG-QSQSVE--GQVRITASDVMSTYQLPAMLKQIRL 126

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P ++I ++  N   D+    AD AIR  +P Q   LI R +     H YAA  YL   
Sbjct: 127 AAPRLEIDVVAANDLRDLHRREADIAIRHIRPTQ-PDLIARLVAQASAHLYAASSYLDQV 185

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCV 236
             P S +EL + + ++FGD + + +   N       P G P      ++ S+  ++ + +
Sbjct: 186 GRPRSEEELAQLDFVSFGD-VERFIGFLN-------PAGIPVTRKNFRIGSHSGVVSWEL 237

Query: 237 L--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           +  G G++++ D +    P + RI+ D    +F ++      L    +++
Sbjct: 238 VRQGFGVSVMSDDVAAPTPGIERILPDRDPFAFPIWLATHSELHTARRIR 287


>gi|194289699|ref|YP_002005606.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223534|emb|CAQ69539.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 302

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 141/291 (48%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD L+ F  V +SGS   AA  LH++ S++ R+++ LE  +G  LF RHA G  +T  G
Sbjct: 5   DWDDLKYFLAVGQSGSLAGAARALHVNHSTVLRRLARLEDTLGTLLFERHATGYAMTLAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +  + V  +++  Q +L     + SG LR+ TT  L   LL      F  L+P IQ
Sbjct: 65  EALAQRLAGVGEQIDAAQRQLSGLDSQLSGPLRVTTTDTLLGALLMPLFAAFRALHPRIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QL+++N  + +S   AD AIR   P  +    L+ R++  +    YAA  YL+    P 
Sbjct: 125 LQLVVNNSFLSLSRREADMAIR---PANTPPEYLVGRRIGRLQTAPYAARSYLQQLGLPA 181

Query: 182 SIQELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +       +   +  ++P + +        +   + EPR   +  +S +++      G G
Sbjct: 182 AADSPALSDWPAYDWVVPDEALSHLAQARWIREHVPEPR-RVVSADSLVAMADAVRHGMG 240

Query: 241 IALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +L   +  D+P LVR+   D    +      +P+ L+++ +++A  +F+
Sbjct: 241 AGMLLCLLAGDDPALVRLAPPDAAMDTDLWVLTHPD-LRHSARVRALADFL 290


>gi|217979336|ref|YP_002363483.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
 gi|217504712|gb|ACK52121.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 299

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 142/294 (48%), Gaps = 14/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L VF  V    S   AA +L LS  ++S+ ++ LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEGLAVFAKVVEMRSIAGAAAELGLSSPTVSKALTRLERRLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L     ++    E  +  L   S  P G +R+A  +  G   +   L +FL  YPD+ 
Sbjct: 66  RELTDRARQLVADAEAAETALIAQSSTPRGLVRLAAPMSFGLREVAPILPDFLTRYPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L++  +D+  +  D A+R+   +  SSL+ R+L     +  AAP YL+    P   
Sbjct: 126 IDLHLNDALVDLIGEGFDAALRVGL-LPDSSLVARRLCATPRYTVAAPSYLERHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDF----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             L  H  + +  L    +  F       A+V RP G+     L+ N+  ++M   + G 
Sbjct: 185 AHLSDHVCLGYTYLAAPDVWRFKNQKGEEASV-RPKGQ-----LRANNGDALMPALIAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  LP++IVK+   +  L R++ + +TP  +++   P       +++   +F+
Sbjct: 239 GVGDLPEFIVKEALADGRLERVLANWLTPQGSLFLVTPPGGPRPARVELLGDFL 292


>gi|192360613|ref|YP_001983795.1| LysR family transcriptional regulator [Cellvibrio japonicus
           Ueda107]
 gi|190686778|gb|ACE84456.1| transcriptional regulator, LysR family [Cellvibrio japonicus
           Ueda107]
          Length = 299

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 136/302 (45%), Gaps = 37/302 (12%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  V R GSF  AA QL +S S +SR +S LE ++G +L YR  R + LT+ G 
Sbjct: 4   WESVEAFIQVIRQGSFAGAARQLQVSNSHVSRLVSQLELQLGTQLLYRTTRQIRLTDAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   ++  L   ++ L     +PSG L+I      G   +   + +F L YP +++
Sbjct: 64  VYFDHCCHLFDGLREAELLLHHYRDQPSGLLKITAATTFGDKFIAPVVNDFQLRYPQLKV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   N+ +++  +  D  IR+   ++ S+L+ ++L     +   +P Y +    P S+ 
Sbjct: 124 SMYFSNRQVELIEEGFDVGIRM-GVLRESTLVAKRLCDRREYIVGSPAYFRRSPAPQSLA 182

Query: 185 ELDKHNLI--TFG-----------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           ELD HN +  T G           DL+ +     NW                Q NS  ++
Sbjct: 183 ELDSHNCLVGTRGYWLLSDKGQRKDLVVRG----NW----------------QANSGPAL 222

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +   + G G+A LPDY V +   +  L  ++E        V+  YP+      K++ F +
Sbjct: 223 LDAALKGIGLAQLPDYYVDEFLGDGRLQSVLEQHRYSDTGVWVVYPQQRHLAPKVRLFID 282

Query: 289 FI 290
           F+
Sbjct: 283 FL 284


>gi|300704767|ref|YP_003746370.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299072431|emb|CBJ43776.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 290

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 137/295 (46%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++  F  AAE + +  S++SR+I  LE  +G++L +R  R + LTE G  
Sbjct: 5   NDMALFVEVVKAKGFRSAAEAMGIPNSTLSRRIGALEKAIGLRLLHRTTRKIELTEAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      +L E   +PSG LR +  +D     L   + EF  LYP I   
Sbjct: 65  YFERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFAGLYPGITFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D+  +  D AIR+  P + S LI R L ++  H YA+P YL    EP    +
Sbjct: 125 FDLTPRRVDLVSEPFDVAIRM-GPSEDSQLIARPLASLTPHLYASPGYLDRSGEPRKPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L++H  ++        ++D    ATV   +G        +NS   I +  VL  GI L+P
Sbjct: 184 LERHECLSILKAGSWTLQDGKRTATVS--VG----GRFTLNSVGMIRRLAVLDLGIVLMP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA-FRNFI-FLKAR 295
           + IV D   +  L RI+         VY     A+  T  L A  + FI FL+AR
Sbjct: 238 EEIVADELASGKLRRILPGWHGTPMPVY-----AITETRLLPAKTQRFIEFLRAR 287


>gi|254521789|ref|ZP_05133844.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219719380|gb|EED37905.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 316

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 143/294 (48%), Gaps = 16/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R F  +   G    AAE L +S + +S+Q+  LET +G+ L  R  R ++LTE G 
Sbjct: 19  FNLMRAFRRIVERGGLARAAEDLGMSPAGLSKQLRTLETHLGVVLLQRTTRRMSLTETGH 78

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +  +L+  +  + E   + +G+LR+        + L   L  FL  +P + +
Sbjct: 79  AYYRECCRLLDELDALERGIAEQRGEVAGRLRVNAPQSFALSTLSPLLPRFLQQHPQLSL 138

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+++++ +D   +  D ++RLR  +  S L+ R+L ++     AAP YL+    P ++ 
Sbjct: 139 DLVMEDRLLDAVGEGFDVSLRLRAELDDSRLVARRLASLQQVLCAAPSYLQQHPVPQAVD 198

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241
           +L  H+++ +   +P     +  L     P G+  I+    + VN+ L +    V G GI
Sbjct: 199 DLQAHSVLAYS--LPDSPGSWPLLG----PDGQVTITLPARVTVNNSLMLRDLLVAGMGI 252

Query: 242 ALLPDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++    P+L R     ++ D   P   V+  YP +     K++AF +F+
Sbjct: 253 GALPSFLAA--PSLARGELQQVLPDHRYPPRFVHAVYPTSRHLQPKVRAFIDFL 304


>gi|86356442|ref|YP_468334.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280544|gb|ABC89607.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 294

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 141/291 (48%), Gaps = 14/291 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA   SF  AA+ L +S  ++SR +S LE  +G +LF R +R L LT+ G +L   
Sbjct: 1   MFAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFGLRLVDS 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + +Y + E  +   +E + +P G +R+A  +D G   L   L +F  L+P+I I L + 
Sbjct: 61  AARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEISIDLHMS 120

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +DI  D  D A+R+   +  SSL+ R+L  +     AAP YL     P   +EL  H
Sbjct: 121 DAVVDIVGDGFDAALRI-AVLPDSSLVARRLTPVDRFILAAPAYLDRYGVPEHPRELAAH 179

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIALLP 245
           + + +     +  +D   L   +   G+  +      L+  +  +++   + G G+  LP
Sbjct: 180 HCLGYAY---RARQDVWRLRNGE---GKEEVIVPSGSLRATNSQALVPMALRGLGVIELP 233

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +++  D   +  L  I+ D   P+  +YF  P A     K++   +F+  +
Sbjct: 234 EFLAHDHLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLSDFMMAR 284


>gi|298369439|ref|ZP_06980757.1| contact-regulated protein A [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283442|gb|EFI24929.1| contact-regulated protein A [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 300

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 120/249 (48%), Gaps = 5/249 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGSF+ AAE+L L+ S++SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTHSDELAVFVQVVESGSFSRAAERLGLANSAVSRTVKRLEDKLSANLLNRTTRQLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +      ++ H +E  + E+  +   P G LR+ +      +L+   ++ F   +P
Sbjct: 61  EEGCRFFERARQILHDIEAAETEILSAGGAPQGVLRVDSATPTLLHLVAPLVRPFCERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L      ID+     D AIR    +  S+L  R L    +   AAP YL     P
Sbjct: 121 QVSLLLTSSEGYIDLIERRVDIAIRA-GSLHDSALRARHLFDSRLKLVAAPDYLARRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L +H LI F +  PK + ++ +  T   P     +  L  NS  +I + C+ G+G
Sbjct: 180 QTVADLSQHTLIGFSE--PKTLNNWPFADTGHTPYAA--VPQLSANSGETIRRLCLEGNG 235

Query: 241 IALLPDYIV 249
           IA L D+  
Sbjct: 236 IACLSDFTA 244


>gi|294141401|ref|YP_003557379.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293327870|dbj|BAJ02601.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 326

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 137/294 (46%), Gaps = 18/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + ++  + +S     AA++L L  ++++R++  LE  +G KL YR AR   +T +G  
Sbjct: 23  DDIALYIHIVQSRGLASAAKRLGLPAATVTRRLQKLEASIGCKLIYRSARQFAVTAEGEV 82

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   E+    E TQ  L       SGKL++    ++   LLQ     F+  YPDIQ+ 
Sbjct: 83  YYQAFYELVQTFEATQRSLSAELHLLSGKLKVLAPTNISTGLLQPMWSSFIKSYPDIQLD 142

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+N + DI    AD A+R+  P + S L Q+ L  I     A+  YL N   P  + E
Sbjct: 143 LSLNNANQDILAAQADIALRI-GPQKDSQLYQKGLGFIPTVLVASTDYLNNHGAPEQLDE 201

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGSG 240
           L  H +I     IP       W  T  R  G      P I+   VN      Q+   G G
Sbjct: 202 LSDHRIIGVNS-IPI------WTLT-HRVSGHLVELTPSINTF-VNDIKVASQWACDGIG 252

Query: 241 IALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           IALLP   + +D  + NLV+++ D   P   +Y  +P     + K K  R+F+ 
Sbjct: 253 IALLPISEVYQDLHDGNLVQLLTDWSGPRRELYAVWPSGRLLSAKAKCLRDFML 306


>gi|157376708|ref|YP_001475308.1| carbonate dehydratase [Shewanella sediminis HAW-EB3]
 gi|157319082|gb|ABV38180.1| Carbonate dehydratase [Shewanella sediminis HAW-EB3]
          Length = 309

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  V +SG F+ AAE +  S S +S++I+ LE  +G++L  R  R + LT +G 
Sbjct: 7   FDGIVIFTQVVKSGGFSAAAESMGHSSSYVSKEINKLEARLGVRLLNRTTRSIGLTPEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++    E     + +  V P G+L+I++ I    + LQ  L E++  YP++ +
Sbjct: 67  AYYQQCQQLMVDAEQAVELITQHDVDPKGRLKISSPIGFANSYLQPILSEYMQRYPNVSL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L+++ +D+  +  D AIR    ++ SSLI RK+ +   +  A+  Y+     P   Q
Sbjct: 127 ELDLNDRRVDVVAEGYDLAIRAALQLEESSLICRKIFSCKGYTVASKAYISRHGRPHHPQ 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H+ + + +   K    + +  +   PI  + R   L  N+ +  +   + G GI  
Sbjct: 187 ELSRHHCLCYSNH--KTPGRWQYKDSEGDPIQVDVRQKVLSNNAEIQ-LALTLSGHGICR 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP + + D   +  L  +   +  P   VY  YP     + K++AF + +  K
Sbjct: 244 LPKFYMTDALASGQLEILFPALPAPEIDVYVVYPSRKHLSPKVRAFIDLVVEK 296


>gi|115359722|ref|YP_776860.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285010|gb|ABI90526.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 307

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 149/300 (49%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE G +
Sbjct: 8   DDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + ++
Sbjct: 68  VFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLNVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  +R+   I +  LI R+L T H    A+P YL     P ++ +
Sbjct: 128 LDLFDRLVDVAGEGYDLDVRIGDEI-ADHLIARRLATNHRVLCASPDYLARRGTPRTLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233
           L  H+ +   +               D P G  R+      + ++V   LS       +Q
Sbjct: 187 LASHDCLAIKER--------------DHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQ 232

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + G GI L   +      +   L R++ D I P+  ++  YPE +  + K++   +F+
Sbjct: 233 WALAGRGIVLRSIWEAAPLIERGELCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFL 291


>gi|107024466|ref|YP_622793.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116688155|ref|YP_833778.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105894655|gb|ABF77820.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116646244|gb|ABK06885.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 294

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 132/284 (46%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G   +  
Sbjct: 9   AFVRTAEALSFVAAGRALGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTDEGRHFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +       +  +  S+ +P GKLR++  + +G   L   L EF   YPD+++ L  +
Sbjct: 69  CQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + +EL+ H
Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTPRELEAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + +    P   +  +W    D        + +  N+  ++    + G GI  +PD++ 
Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLTLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +D      LV +++D           +P + + + KL+ F +F+
Sbjct: 245 RDALEYGTLVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288


>gi|325168451|ref|YP_004280241.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064174|gb|ADY67863.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 299

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 146/298 (48%), Gaps = 13/298 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD      + VF  V  +G+F  AA+ L L+ S +SR ++ LE  VG++LF R  R +
Sbjct: 1   MTFDTRLLTGVGVFGAVMEAGNFVRAADVLGLTPSGVSRAVARLEQRVGVRLFDRSPRKV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLTE+G++ H     +   LE    E   S+    G++R++      + LL   + EFL 
Sbjct: 61  TLTEEGARFHARIMPLLAGLEEAASEAAGSAAFVGGRIRVSIDPWFARMLLAPRIGEFLA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP + + L   N   ++ M  AD A+R   P   SSLI RKL+ + +   AAP YL   
Sbjct: 121 LYPALTLDLTTSNYREEM-MSGADVAVRFGPP-DESSLIARKLLDVPVLTCAAPGYLDRY 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
             P++  +L +H+ I F D  P+    F W    D    E +++  L ++   + +  C+
Sbjct: 179 GVPVTPHDLMRHDCILFRD--PQTGRPFTWEFQGDNGAIEIKVAGRLVMDDPSAAVAACL 236

Query: 237 LGSGI----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI    A+  D  ++    L  I+ +     F +Y  +P       K++AF +F+
Sbjct: 237 AGQGIFQSFAIGLDEWLESG-ALTTILTEWSGERFPLYAYHPSRHMPPAKVRAFLDFV 293


>gi|24372428|ref|NP_716470.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24346402|gb|AAN53915.1|AE015528_8 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 303

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 144/298 (48%), Gaps = 18/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE E+G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEELGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKTRGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +EL  H+ I  G      + P        + +  R +        +VNS + + Q  +  
Sbjct: 182 KELSDHSGILLGTSRSAPIWPLGKGTRKTMVSFQRKV--------RVNSPIMVKQLALDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA+L +   K    N  LV I+++     F VY  Y    +    + AF +F F+K
Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPMEPFKVYGVYSSRRQLATNISAFLDF-FVK 290


>gi|39936450|ref|NP_948726.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39650305|emb|CAE28828.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           CGA009]
          Length = 338

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 136/296 (45%), Gaps = 19/296 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + +DW+ +  F  VAR  S   AA +L +  +++SR++  LE  +   LF R   G TLT
Sbjct: 31  IRYDWNDVVYFLEVARQRSLVRAAAKLKVDHTTVSRRVRELERSLNSTLFKRSKSGFTLT 90

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L +    +  +  +    +   +    G +RIA    +G   L   + +F  +YP
Sbjct: 91  EIGMRLLQYAEGMESQANSIVEAIGTDTADAGGAVRIAAMEGIGSFYLTRCIADFNRIYP 150

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQI+LI D + +D+S   AD  +   +P     L  +K+    +  YA   Y      P
Sbjct: 151 SIQIELITDTRLLDLSRREADIFVSFFRP-HGKRLSIKKVGEFRISLYATDAYFGGRSPP 209

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF------NWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            +++EL+ H  I F       +ED+       WL+ V RP   P  +  +  S ++    
Sbjct: 210 TTVKELETHAFIDF-------IEDYIYSKENRWLSDVLRP---PH-TIFRSTSLVAQSIA 258

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              G GIA+LP Y+   N  L  +M ++ T +  ++    E L +  ++KA   F+
Sbjct: 259 VSAGQGIAMLPSYVASGNAELFPVMPELFT-TRDIWLSVHEDLLHVARIKAVTTFL 313


>gi|315181449|gb|ADT88362.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 306

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 142/300 (47%), Gaps = 21/300 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + +F  V   GSF+ AAE+L +++S++S++++ LE E+GI+L  R  R L+LT
Sbjct: 2   MDNTFAAIPIFVAVVECGSFSSAAEKLSITKSAVSKRVTQLEDELGIRLLNRTTRKLSLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   S+     +     + E   +P GKL+I   +  G   +   + EFL  YP
Sbjct: 62  EAGERYYYHVSQALSFAQQGSDAVTELQGEPQGKLKITAPMSFGVLHVATLIAEFLTRYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L L+++ +D+     D AIR+   +  S+L+ ++LV        +P YL     P
Sbjct: 122 KVEIDLQLEDQMVDLVQGGFDLAIRIGH-LPVSNLVAKRLVRCRSVLCCSPDYLSRHPAP 180

Query: 181 LSIQELDKHNLITFGDL-------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
               +L +HN + +            +   DF  + T +          L VN+  +I +
Sbjct: 181 QKPADLLQHNCLVYSYFRGGSEWTFTQNGADFKVIPTGN----------LSVNNSEAIRR 230

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GI  LP ++V  +     L  IM D   P   +Y  +PE      K++AF  FI
Sbjct: 231 ALLDGLGIGQLPTFLVSKDIRAGKLHAIMTDYPLPEHAIYAVFPERKHLPHKVRAFMTFI 290


>gi|319424784|gb|ADV52858.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 323

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 40/281 (14%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS  +  
Sbjct: 11  VFATIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFYEN 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V   +++T+ +L      PSG+L+IA  +  G  LL    +  L  +P I + L++ 
Sbjct: 71  CRKVISIVDSTEQKLNNLKGIPSGELKIAAPVGFGGGLLSEPFQYLLATHPQISLNLVMQ 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCREPLSIQEL 186
           +  IDI  D  D AI +  P+  S+LI R L    M    +P YL    N + P  +   
Sbjct: 131 DGPIDIVNDGIDLAICI-GPLSDSNLIARHLADWRMLLCTSPDYLPMHHNIKHPSELAVF 189

Query: 187 DK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-------VNSYLSIMQYCVL 237
           ++  HN  T G+L+                   P + C +       VN+  +++Q  + 
Sbjct: 190 NRINHNY-TKGELLTH----------------HPSLECFELTGQRISVNNMQTLIQLTLD 232

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITP-----SFTVYFCY 273
           G G A LP+  V D      + + V+ P     SF  Y  Y
Sbjct: 233 GLGYAALPEPEVLD-----YLDKGVLVPLLPEWSFNTYSVY 268


>gi|306842646|ref|ZP_07475293.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306287216|gb|EFM58709.1| LysR family transcriptional regulator [Brucella sp. BO2]
          Length = 297

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G +L 
Sbjct: 9   LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++ +   ++ E   +P+G +R++      Q++L   L+ FL  +PDI I+L 
Sbjct: 69  AQVGPALAEIASGFAQIGELRERPAGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   Q+L 
Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+ I     +P   E F W  T  R   + RI+    L   S   ++Q C+ G G+A L
Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P DY  +  ++  LV ++ D        +  YP   ++   L A 
Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289


>gi|300312244|ref|YP_003776336.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075029|gb|ADJ64428.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 293

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 129/249 (51%), Gaps = 7/249 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   ++LR F  V  +G+ + AAE L  + S +SR +S LE ++G  L  R  R + LT
Sbjct: 1   MSLQSEELRTFVAVVEAGTLSAAAELLAQTTSGVSRALSRLEDKLGASLLTRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E+ Q  ++  + KP GKLR+  +     + +  ++ +F   YP
Sbjct: 61  EEGRAFLEQARAILAAMESAQDSIRLRTRKPVGKLRVDASAPFMLHCVVPHVGQFRAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  +++ ID+    AD AIR+ + +Q SSL  R L +  ++  A+P YL    EP
Sbjct: 121 DIELELTTNDRFIDLVEHRADIAIRIGE-LQDSSLHARALSSARLNVVASPAYLARHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            S++ L++H LI F    P  +  +    +  DR    P I   + +S  +I    + G 
Sbjct: 180 ESVEALEQHQLIGFSQ--PDQLNHWPLRHSAGDRYQTRPAI---RASSGETIRHLALQGQ 234

Query: 240 GIALLPDYI 248
           GIA L +++
Sbjct: 235 GIACLSNFM 243


>gi|170722406|ref|YP_001750094.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169760409|gb|ACA73725.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 299

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 146/293 (49%), Gaps = 15/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R+F  V   GSF+  A +L++ Q ++S+Q+  LE  +G  +F R  R L LT+QG 
Sbjct: 4   FDSMRIFARVVERGSFSAVARELNMGQPAVSKQVRALEHYLGGPVFARSTRHLALTDQGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    E+  +LE+          + SG LRIA  +  G+  +   +  FL  YP+++I
Sbjct: 64  RFYSHCQEILRQLESATRSFASGQEQISGPLRIAAPVSYGRLCIAPLIGTFLQRYPEVRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L++ + D+ ++  D AIR+   ++S  L+   L T     YA+P YL+    PL   
Sbjct: 124 DLRLNDHNEDLLVENIDLAIRI-GVVKSEGLVAVSLGTTKRGVYASPTYLQCHGLPLEPG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           EL  HN I F       +E ++ W  T  R   E  I+    +  NS  +I +  + G G
Sbjct: 183 ELAAHNCIGF-----TLLEHYDRWRFT--RGTDEFDIAITGNVTSNSSEAIREMVLCGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I+L P ++ +   +  ++  ++++    +  V   +    +++ +  AF +F+
Sbjct: 236 ISLSPQWLFEADVERGSVQSVLDNYQATALPVSAVFSRERRHSARAMAFIDFL 288


>gi|13471571|ref|NP_103137.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022313|dbj|BAB48923.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 302

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 137/292 (46%), Gaps = 8/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +L+ F  +   GSF  AA +L +S  ++S+ I  LE  VG++L  R  R ++ T  G
Sbjct: 5   EFTELKAFSAIVEEGSFVRAAARLRVSPPALSQSIRQLEARVGVRLLNRTTRSVSATAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +  + +LE+   ++  +  +P+G LRI          +   L +F   YPDI 
Sbjct: 65  DALFSRLAVAFGELESAIADVHAARDRPAGSLRINVPRVAAMRFIAPILGDFQRAYPDIA 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +I+D+   DI     D  IRL + ++   +  +    + M A AAP YL+N   P   
Sbjct: 125 LTVIVDDTLADIVEGRFDAGIRLGERLEKDMVAVKLSEDLQMAAVAAPAYLENRAIPRHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL +H  I F    P     + W     R   E  I   L VN    ++   + G GIA
Sbjct: 185 QELHQHQCIKFE--WPGGGNLYRWEFARGRRALEIAIEGSLTVNDTELMLNAVLDGVGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY-PEALKNTGKLKAFRNFI 290
            + +Y V+   +   LVR +E   +PSF  ++ Y P +      L+AF +F+
Sbjct: 243 YMFEYQVRPWIEQGRLVRFLE-AWSPSFPGFYLYHPSSRHVPPALRAFIDFM 293


>gi|113968866|ref|YP_732659.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113883550|gb|ABI37602.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 317

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L L+++++SR+I+ LE++ G +L +R  R L LTE 
Sbjct: 1   MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   +++   L++ + +L        G L+I   I+LGQ  L     +FL LYPDI
Sbjct: 61  GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++      + L    LV  +    A+P YL     P  
Sbjct: 121 TIEAELTNRKVDVIEEGIDLLFQIADS-SDTRLQSYSLVNAYKSLMASPSYLAEHGTPKV 179

Query: 183 IQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            Q+L KH  I      I    + F+  + V   + EP ++ L VN+     +  + G GI
Sbjct: 180 PQDLAKHKAIRLQSAHIEGAWKLFDGQSWV---VIEP-VTQLTVNNVTIAREAAIAGLGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +P  I +   +   LV +++D       V   YP+      K + F  FI+
Sbjct: 236 TAVPSIIAQEAIEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIY 288


>gi|317492732|ref|ZP_07951157.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919255|gb|EFV40589.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 302

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 139/286 (48%), Gaps = 4/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA   SF+  AE+L L + S+S  I  LE + G +L +R  R +TLT+ G + +
Sbjct: 8   MQVFVSVAELSSFSRTAERLGLPKGSVSGAIQQLENQFGTQLLHRTTRKVTLTQDGHRCY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   + SS   SG+LR+     L + ++Q +L EFL+ +P+++++L 
Sbjct: 68  ERCKGLLADIDELESLFRTSSAPLSGRLRVDMPSGLAKIVIQQSLAEFLMAHPELELELS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   +Q S LI R L  + M   A+P YL+    P +  +L 
Sbjct: 128 SSDRRVDLIQEGFDCVVRV-GALQDSGLIARPLGQLQMVNCASPAYLQKYGCPQNATDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ + +      + F ++              L VNS  S    C+ G GI  +P  
Sbjct: 187 SHQMVHYQNAQVGHSDRFEYVTAQGDVQQVEMQGALTVNSTESYSAACIAGLGIIQVPII 246

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+   D   LV I+  +  P+  V   YP       +++ F +++
Sbjct: 247 GVRHALDTGTLVAILPQLSPPAMPVSLLYPHRRNLARRVQVFMDWM 292


>gi|293395364|ref|ZP_06639648.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422048|gb|EFE95293.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 309

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 106/187 (56%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSFT AA+ L L + ++S+ I  LE E+G+KL +R  R L++T +G + +
Sbjct: 9   ISIFIQVVEQGSFTKAADILQLHRPAVSKAIQQLEDELGVKLIHRTTRKLSVTTKGDEFY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +++        S++ P G+L++   + L   LL  +L +F  LYPDI + L+
Sbjct: 69  QRAKHLLAEVDGMMANYS-STLPPRGRLKLDVPLALAHTLLIPHLAQFKSLYPDIDVVLV 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +K  D+  +  DC +RL + +Q SS I R+L  I M   AAP YL+   +P ++ EL+
Sbjct: 128 SSDKKTDLIAEGVDCVVRLGE-LQDSSFISRRLGEIRMVTCAAPAYLQRYGKPATLTELE 186

Query: 188 KHNLITF 194
           +H  + F
Sbjct: 187 QHQAVNF 193


>gi|71280508|ref|YP_268408.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71146248|gb|AAZ26721.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 295

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 137/275 (49%), Gaps = 16/275 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSFT AAE+L LS+S +S+Q+S LE E+G +L YR  R L+L+++GS+ +
Sbjct: 7   METFSAVVEAGSFTGAAEKLGLSKSFVSKQVSTLEVELGCRLLYRTTRTLSLSDEGSQFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + E  + E+ +    P GK+R+     L  +     L +F L YP+I++++I
Sbjct: 67  NHCKIIMAEAENARAEVMDRQGAPRGKIRMTIPQSLIISGFGQLLIDFQLQYPEIKLEVI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +  D+  +  D A+R+ + ++ SSLI R+L+       A+  Y+K   EP    +L 
Sbjct: 127 ASGRIEDLVKEGIDIALRVGQ-LEDSSLISRRLMDCTFQVVASSDYIKKWGEPFQPADLM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGIA 242
           +HN + +GD         N       P GE  I+     +++S     +++  + G GI 
Sbjct: 186 QHNCLIYGD------SKINKGWPFRSPSGES-ITVKAKGNFISNDGGLVVEGMLNGLGIG 238

Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYP 274
             P ++  ++    R   ++ D   P   +   YP
Sbjct: 239 FGPSFLFNEHVEKGRLKLLLSDYYQPPTAISALYP 273


>gi|295676718|ref|YP_003605242.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436561|gb|ADG15731.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 309

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 139/305 (45%), Gaps = 22/305 (7%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +   GSF  A E L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERVLNGMGVLTAIVDCGSFAAAGEALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +     +   LE       + +    G+LR+       + +L   L  F+ 
Sbjct: 61  TLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGSFID 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+Q++LI  ++  D+  D  D AIR   P   S+L+ RKL+   +   AAP YLK  
Sbjct: 121 KHPDLQLELITRDQLGDMVADGFDVAIRFGDP-PVSTLVARKLLDTRILTVAAPSYLKKH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYL 229
            +P +  EL+  +H  I F D  P     F W     R      P G      L VN   
Sbjct: 180 GKPENPAELEDGRHVCIKFRD--PLTGYPFTWEFHRGRKKLALTPQGR-----LTVNDVG 232

Query: 230 SIMQYCVLGSGIA---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++   C+ G GIA    L    +  +  L+ +  D     + +Y  YP       K++AF
Sbjct: 233 TLHSVCIAGQGIAQILALGAESLLASGKLIELFPDWGDEVYPLYALYPSRHHPPAKVRAF 292

Query: 287 RNFIF 291
            +FI 
Sbjct: 293 LDFIL 297


>gi|167033005|ref|YP_001668236.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859493|gb|ABY97900.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 298

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 140/286 (48%), Gaps = 9/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A + L +S S++ ++++ LE  +G++LF+R  R +TLT +G+     
Sbjct: 9   VFNRVAETRSFVAAGQSLGISASAVGKRVARLENRLGVRLFHRSTRSITLTAEGTLFLDR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T+ EL ++S  P G+LR++     G  L+   L EF+ LYP +++ L   
Sbjct: 69  SRRILAEIEATEQELSQASETPRGRLRVSMPQVTG--LVMPALAEFMALYPQVELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R  +P+  S L  + L        A+P YL+    PL  +EL  H
Sbjct: 127 DRMVDIVGEGFDVVMRGGQPVD-SRLNAKFLGHFQHRLVASPDYLRERGTPLHPRELATH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDYI 248
             + +    P   +   W    + P     I    V +++   + + V   GI  LPD+ 
Sbjct: 186 TCLHY--RFPSNGKLETWPLRQEHPEHAYDIPISMVCNHVETRVCFAVNHRGITCLPDFT 243

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           V     N +LV +++D +    + Y  +P       KL+ F +F+ 
Sbjct: 244 VGRELGNGSLVSVLDDFMEQRGSFYLLWPSGRHMPPKLRVFIDFML 289


>gi|270261513|ref|ZP_06189786.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044997|gb|EFA18088.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 296

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 140/286 (48%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA +GSF  AAE L L  S++S  I  LE  + ++L  R  R ++LT +G++  
Sbjct: 7   MQIFVRVAEAGSFILAAETLSLPASTVSSTIKNLEKYLQVRLLNRTTRRVSLTTEGAQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E T+  L +S  +P G+LR+     +   ++  NLK+F   YPDI + + 
Sbjct: 67  AQCREILELIEHTESSLTDSVKRPQGRLRVDMPGGIAHFVVMPNLKDFYRRYPDIYLMIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D+  +  DC IR    +  S+L+ R L        AAP YL+    P + ++L 
Sbjct: 127 VNDRQVDLVQEGVDCVIRTGN-LNDSTLVARPLGQFRWVTCAAPAYLRENGIPQTPEDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I +     +   +  + +  ++ I  P      VN     ++ C+ G G+A L + 
Sbjct: 186 HHRAIHYFSGHARRAGEMCFFSGTEK-ISVPVNGVAAVNETGLYIKMCLEGFGLAQLAER 244

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V ++     L+ +M D    S  V   YP     +  ++AF ++I
Sbjct: 245 VVAEHLQEGRLIEVMADWQPASVPVTLLYPHQRFLSPAVRAFADWI 290


>gi|260778266|ref|ZP_05887159.1| LysR protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606279|gb|EEX32564.1| LysR protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 301

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 143/295 (48%), Gaps = 19/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L VF+ + R GS T AA++L ++  S+S  +  LE ++G+ LF R  R + LTE G 
Sbjct: 6   FNQLTVFHAIVREGSITKAAQKLEMASPSVSNALKALEEQLGLPLFTRTTRRIELTEAGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH  TS+    L      + + S  PSGK+R+ T   + Q LLQ    EF   YP+IQ+
Sbjct: 66  LLHLSTSDSMSDLSLAFESISDLSKVPSGKVRLTTPRFVYQYLLQPIYAEFCQRYPNIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSI 183
           ++ + +  IDI  +  D  IR    ++   +I R+L      A +A+P Y++    P + 
Sbjct: 126 EISISDAAIDILNEGFDLGIRFGDRVE-EGMIARQLTPAMREALFASPEYIEQYGMPDTP 184

Query: 184 QELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             L +H L+ +       L P  + +     TV+ P        L VN    ++   + G
Sbjct: 185 GALKQHKLVQYRFISSNQLAPLELSNQGERLTVEMP------HALVVNDTGLMLDAALKG 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  + D +V+D   +  LV ++E+   P   +Y  +    KNT K K  R  I
Sbjct: 239 LGIGRIVDPMVEDLFASKQLVPVLEEYWAPYSGLYVYFH---KNTQKAKRVRVLI 290


>gi|256112563|ref|ZP_05453484.1| transcriptional regulatory protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265994005|ref|ZP_06106562.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|262764986|gb|EEZ10907.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
          Length = 297

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 133/285 (46%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G +L 
Sbjct: 9   LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI I+L 
Sbjct: 69  AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   Q+L 
Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+ I     +P   E F W  T  R   + RI     L   S   ++Q C+ G G+A L
Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRIMTQGRLVFTSIAQVLQACLAGFGLAYL 244

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P DY  +  ++  LV ++ D        +  YP   ++   L A 
Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289


>gi|330818714|ref|YP_004362419.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327371107|gb|AEA62463.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 311

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 140/310 (45%), Gaps = 25/310 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F   A SGSF+ AA+++ +  S++SR +S LE ++GI LF R  RGL LTE G    
Sbjct: 7   IRAFLHAAESGSFSKAADRIAVKTSTVSRYVSELERDLGIALFNRSTRGLVLTEGGRVFR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   L+  +      +  P G LR+      G   +  +L EF   YP I I  +
Sbjct: 67  EHAQAVLAALDEAREATSSLNASPRGLLRVTMPRAFGLRHVIPHLPEFTARYPGIDIDAV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D AIR+   +  S LI R+L        A+P YL+    P +   L 
Sbjct: 127 LSDETVNLIDNGIDLAIRI-GVLPDSQLIARRLAMHRRIVCASPTYLEQHGAPDTPAALA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLAT--------VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            H ++ F    P   +D  W A         VD P        L+ +   ++ Q  + G 
Sbjct: 186 GHEVLRF----PLMPDDRWWFAARAPRDEEQVDEPFSVQLRGRLRADDTDALRQLAIAGC 241

Query: 240 GIALLP----DYIVKDNPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI- 290
           GIALLP     + ++D   LV ++ D        +  ++  YP     + K++AF +F  
Sbjct: 242 GIALLPVWALGHALRDG-RLVHLLADWDVQTARTASAIWAVYPPKKTVSSKVRAFIDFYA 300

Query: 291 --FLKARDWK 298
             + +  DW+
Sbjct: 301 DRYARLVDWE 310


>gi|313106317|ref|ZP_07792561.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310879063|gb|EFQ37657.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 371

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 79  LHAFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 138

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126
             T + Y  L   +  L ES  +PSG+LRI + + L +NL +   L EF+  YP +Q+++
Sbjct: 139 EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 197

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +L
Sbjct: 198 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEYGTPASVADL 257

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGI--AL 243
           D H  + F    P+      W    D    E  +S   V++   +I++    G+GI  A 
Sbjct: 258 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLSARFVSTDTETIIEAARAGAGIAQAF 315

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 316 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 368


>gi|298489036|ref|ZP_07007059.1| Transcriptional regulatory protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156534|gb|EFH97631.1| Transcriptional regulatory protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 302

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 141/304 (46%), Gaps = 20/304 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           ++  D L VF  V + G+FT AA +L +S S++ + I GLE  +G++L  R  R +T TE
Sbjct: 9   TYKLDDLAVFATVGQEGNFTRAAARLGVSASAVGQTIRGLEERLGVRLLTRTTRSVTPTE 68

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G KL R    +  ++        E S +PSG +RI+      + +L   LK  +  YP+
Sbjct: 69  AGDKLLRGLVPLLDEINAQVDAALEYSERPSGTVRISADEFAARAILWPRLKSVMAHYPE 128

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+LI D    DI  +  D  +RL   I +  +       + M   A+P YL     P 
Sbjct: 129 ITIELITDYGMTDIVAERFDAGVRLGGTIAADMIASPISGEMRMVTVASPEYLSRHPAPQ 188

Query: 182 SIQELDKHNLI-----TFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYC 235
           + +EL  H  I     T G L P    +F+      R  +G P I    +NS   I+  C
Sbjct: 189 APEELTSHKCINLRLPTHGGLYPW---EFSSQGREFRVRVGGPLI----MNSVYQILDGC 241

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291
           + G G A LP+ +V    +N  L+ I+     P    +  YP   ++T    AFR  +  
Sbjct: 242 LEGIGAAQLPNGLVDRYLENGELIEILAAWSEPFQGYHLYYPSRRQHT---AAFRVVLDA 298

Query: 292 LKAR 295
           L+AR
Sbjct: 299 LRAR 302


>gi|134279453|ref|ZP_01766165.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167844550|ref|ZP_02470058.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167917806|ref|ZP_02504897.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|134248653|gb|EBA48735.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 294

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 141/287 (49%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++    LG  +L   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LGAPVLP-VLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W    A  D  +  PR   +  N+  + + + + G G+A +PD
Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPR--SMICNNVETRVCFALRGRGLACVPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+D   +  L  +++  I    T +  +P     + KL+AF +FI
Sbjct: 242 FAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288


>gi|319794019|ref|YP_004155659.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596482|gb|ADU37548.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 304

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 143/286 (50%), Gaps = 12/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V  +G+FT AA+ L L + ++++QI  LE+ + +KL  R  R +T+T  G+   
Sbjct: 7   MRIFVRVVEAGTFTRAADSLALPKGTVTKQIQALESRLRVKLLNRTTRRVTVTPDGAAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + + +  +  +  +  +   P+G+LRI     + + ++  NL  F   YPDIQ+ L 
Sbjct: 67  ERAARLLNDFDDMEASMTNAQASPTGRLRIDVGTSVARQIILPNLASFCDRYPDIQVDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR  + +   SL+ R++ T+H    A+P Y+K    P    +++
Sbjct: 127 VSDRTVDLISDNVDCVIRAGE-LSDQSLVARRIGTLHFVTVASPAYIKRYGTPAHPNDIE 185

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGS-GIAL 243
           K H ++++     + +    +    +R    G  R+S  + N++++     VLG  GI+ 
Sbjct: 186 KRHTVVSYFSGTTRRIYPHEFHKGDERIELNGPYRVSVNESNAHMA----AVLGGFGISQ 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              ++     ++  LV ++ D       ++  YP     + K++AF
Sbjct: 242 CITFMADPHLESGELVEVLADWSRDPLPIHVVYPPNRHLSAKVRAF 287


>gi|117918975|ref|YP_868167.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611307|gb|ABK46761.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 317

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L L+++++SR+I+ LE++ G +L +R  R L LTE 
Sbjct: 1   MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   +++   L++ + +L        G L+I   I+LGQ  L     +FL LYPDI
Sbjct: 61  GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++      + L    LV  +    A+P YL     P  
Sbjct: 121 TIEAELTNRKVDVIEEGIDLLFQIADS-SDTRLQSYSLVNAYKSLMASPSYLAEHGTPKV 179

Query: 183 IQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            Q+L KH  I      I    + F+  + V   + EP ++ L VN+     +  + G GI
Sbjct: 180 PQDLAKHKAIRLQSAHIEGAWKLFDGQSWV---VIEP-VTQLTVNNVTIAREAAIAGLGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +P  I +   +   LV +++D       V   YP+      K + F  FI+
Sbjct: 236 TAVPSIIAQEAIEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIY 288


>gi|330502898|ref|YP_004379767.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328917184|gb|AEB58015.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 306

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 141/295 (47%), Gaps = 24/295 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +F  V    SFT AA  + + +S++SR+I+ LE  +G++L  R  R L LTE G  
Sbjct: 4   DDALIFTRVVECHSFTQAATSMGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEVGQA 63

Query: 66  LHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            +    ++   + + E   ++LQ    +PSG LRI + I+ GQ  L   L EF+  YP I
Sbjct: 64  YYERCRQIMLDFAEAEQAVMQLQR---EPSGLLRITSPIEFGQLFLGRVLGEFMRQYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++ L ++ +D   +  D AI++ +P Q S+LI RKL        A+P YL     P S
Sbjct: 121 DAEVELTSRSVDPLEEGVDIAIQVGQP-QDSTLIARKLFESGRRLCASPAYLAAHGTPRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGS 239
           + EL+ H  I      P+      W      P+    + C +V   N+     +  + G+
Sbjct: 180 VAELEGHRAILLQHDAPR-----YW------PLLGEHLPCQRVMTCNNITFAREATLAGA 228

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GI+ LP  I ++   +  LV ++ +   P   VY  YP       K+K F +F+ 
Sbjct: 229 GISGLPVMISEEAVRSGRLVELLPEARLPVGEVYAIYPSRRFQAMKVKTFLDFLI 283


>gi|307727526|ref|YP_003910739.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588051|gb|ADN61448.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 304

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 141/281 (50%), Gaps = 13/281 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A +G FT AAE+L+L+ S++S+ ++ LE  +G+ LF R  R L+LT+ G   +   
Sbjct: 15  FVCAADAGGFTAAAERLNLTSSAVSKSVARLERRLGVVLFERTTRSLSLTDAGRAFYETC 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  +L   +  L     +P G +R+A     G+  +   L  F   YPD++ QL+  +
Sbjct: 75  TRILAELAEAEAILAAQKREPVGTVRVALPASFGRLCVVPVLVRFSAQYPDVRPQLLFTD 134

Query: 131 KDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  D  D A+R+  P +  +SL QR L    +   AAP YL+    P +I +L++H
Sbjct: 135 RFVDLVEDGVDLAVRIGGPSVLPASLGQRFLGRERLIFCAAPAYLEKNGMPQTIDDLEEH 194

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245
             + +G   P   +     A  D  +G+    PRI      + L+ ++    G GIA L 
Sbjct: 195 ACVVYGR--PDGEQSPWSYAVADGQVGQCIVRPRIVAGDAEAQLAFVRA---GLGIAQLA 249

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            ++V+D+     LV I+++  T    +   +P A + T K+
Sbjct: 250 TWLVRDDLKAGRLVTILDEAATDGLPLSLLWPVARQLTPKV 290


>gi|254718279|ref|ZP_05180090.1| transcriptional regulatory protein [Brucella sp. 83/13]
 gi|265983240|ref|ZP_06095975.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306838890|ref|ZP_07471718.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|264661832|gb|EEZ32093.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306406006|gb|EFM62257.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 297

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G +L 
Sbjct: 9   LNAFVAVTETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++ +   ++ E   +P+G +R++      Q++L   L+ FL  +PDI I+L 
Sbjct: 69  AQVGPALAEIASGFAQIGELRERPAGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   Q+L 
Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPGFLEKGGKPKRPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+ I     +P   E F W  T  R   + RI+    L   S   ++Q C+ G G+A L
Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P DY+ +  ++  LV ++ D        +  YP   ++   L A 
Sbjct: 245 PRDYVARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289


>gi|221199296|ref|ZP_03572340.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205802|ref|ZP_03578817.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221174640|gb|EEE07072.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180581|gb|EEE12984.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 300

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 29/307 (9%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD      + V   V  +GSF  A E + L+Q ++SR ++ LE  +GI++F R AR +
Sbjct: 1   MRFDSRLLSGIGVLSAVIEAGSFARAGEAIGLTQPAVSRAVARLEERIGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++   +  K  G+LR+      G  +L   L  FL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEDAALDAGRAKEKVRGRLRVNVDGTFGHYVLAPKLAAFLE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+P Y+   
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGVP-EPSSYRARLLLETRVLTCASPAYVARH 179

Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW----------LATVDRPIGEPRISCLQVN 226
            EP   ++L D H  +   D  P     F W           A   R         L VN
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPFEWEFHRGGEVVPFAAAGR---------LMVN 228

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
              S++  C+ G+G+A L +   +D      L  ++ D    +F +Y  Y  +   + K+
Sbjct: 229 DTGSLLGACLGGAGVAQLLELYARDIVSEGRLTLLLPDWTDETFPLYAYYHASNLVSAKV 288

Query: 284 KAFRNFI 290
           + F +F+
Sbjct: 289 RVFLDFV 295


>gi|91795113|ref|YP_564764.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91717115|gb|ABE57041.1| transcriptional regulator, LysR family [Shewanella denitrificans
           OS217]
          Length = 290

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 131/276 (47%), Gaps = 13/276 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA + SFT A ++L +S + +SRQ+S LE  +  KLFYR  R + LTE+
Sbjct: 2   MQWEGISEFVAVAETESFTAAGKRLSISTAQVSRQVSQLEDRLSTKLFYRTTRKVALTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  +R   +V + L+  +  +     KP G +++   +  G+  +   +  F+  YP +
Sbjct: 62  GAVYYRHCRQVLNGLDDAERAISSLKDKPQGLIKMTAPVTYGETHIMPIVIAFMAQYPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q  L N+ +D+     D AIRL + +  SS++ ++L +   +  AAP Y+     P S
Sbjct: 122 EVQCELTNQRLDLIDGGFDLAIRLGQ-LGDSSMMAKRLSSRRQYVCAAPSYIATYGAPYS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + EL +HN +              W       +   ++   L  +S  S++   + G GI
Sbjct: 181 LSELSQHNCLIG--------SQSQWQFIEQGKVKNIKVQGSLHCSSGFSLLDAAIRGLGI 232

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
             LPDY V        L+ ++E        ++  YP
Sbjct: 233 VQLPDYYVSQALTEGKLMVLLEPFQQSKEGIWALYP 268


>gi|217970299|ref|YP_002355533.1| LysR family transcriptional regulator [Thauera sp. MZ1T]
 gi|217507626|gb|ACK54637.1| transcriptional regulator, LysR family [Thauera sp. MZ1T]
          Length = 299

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 140/297 (47%), Gaps = 27/297 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  V  +GSF  AAE L LS+++ SR +  LET +G++L +R  R L+LTE G + 
Sbjct: 6   EMQTFCAVVDAGSFVGAAEALGLSKATASRYVGELETRLGVRLLHRTTRRLSLTEDGERF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  + EV   LE  + EL   S    G LRI   +  G   L      F  L+P +++++
Sbjct: 66  YARSREVLAGLEEAEAELHSRSGAARGLLRINAPVTFGIRHLAPLWGAFRDLHPQVRLEV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D AIR+   + SS+L+ R+L    +   AAP YL     P    +L
Sbjct: 126 TLADRTVDLVEEGFDIAIRI-AALPSSTLVCRQLARTRIVLCAAPAYLAAHGAPRLPADL 184

Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRIS-----CLQVNSYLSIMQYCV 236
             H +I +     GD          W    D P G  R+S      +  NS  +     +
Sbjct: 185 ASHTVIAYSYWSGGD---------EW--QFDGPDG--RVSVRTRPAVHTNSGDTCRAMAL 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+ L P ++V ++     LV +M    + +  +Y  YP       K++A  +F+
Sbjct: 232 AGQGVILQPGFLVAEDLAAGALVELMPAYRSVTLGIYALYPTRKFVPPKVRALVDFL 288


>gi|120553994|ref|YP_958345.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8]
 gi|120323843|gb|ABM18158.1| transcriptional regulator, LysR family [Marinobacter aquaeolei VT8]
          Length = 298

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 141/287 (49%), Gaps = 24/287 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA  GSFT AA+ L ++ +++S+ I+ LE ++  +L  R  R ++LT+ G    
Sbjct: 9   MNIFRRVAELGSFTRAADDLDITAATVSKHIAFLERDLDTRLINRTTRRMSLTDAGLAFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T  +  +LE  ++E +    +P G +R+   +  G   + G +  FL  YP+I+I L 
Sbjct: 69  KRTQALLDELEDAELEARGFQAEPRGLIRLNVPMSFGLTHITGAIDSFLARYPEIEIDLQ 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+     D AIR+R  +  SSL+ + L        AAP YL++     +  +L 
Sbjct: 129 LSDRMVDLVEQGVDMAIRIRSTLADSSLLAKPLRQSRNIVCAAPGYLEHSPAIHTPADLA 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRI---SCLQVNSYLSIMQYCVLGSG 240
             N + F                 DRP    +G+  +      + +S L+I Q  + G+G
Sbjct: 189 AQNCLMFN--------------LHDRPRVWALGDKEVVVSGNYRTDSSLAIRQSLLNGAG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           + L+P ++V+    N  LV ++ +    ++TV+  +P   K   K++
Sbjct: 235 VGLVPRFLVQQDLANGALVALLSEYPPQTYTVFALFPPGRKQPTKVR 281


>gi|91782875|ref|YP_558081.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686829|gb|ABE30029.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 298

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 146/306 (47%), Gaps = 20/306 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALARLEKKLDTALVRRTTRRLQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    + H +E  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGETFLQHARAILHAMEEAEESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  + + +D+     D AIR+ + +Q S+L  R L T  +   A+P YL    EP
Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRIGE-LQDSTLHARALGTSKLRVLASPAYLAEYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIG------EPRISCLQVNSYLSIMQ 233
            S++ L +H LI F        E  N W     R  G      EP I+    +S  ++ Q
Sbjct: 180 RSVEALREHRLIGF-----TAPEHLNRWPLREGRKGGAEALKIEPAITA---SSGETLRQ 231

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289
             + G GIA L D++   +     LV I+ +V+      V   Y ++    G+++ F +F
Sbjct: 232 LALSGWGIACLADFMSAADVREKRLVPILGNVLVDERQRVSAVYYQSASLAGRVQCFLDF 291

Query: 290 IFLKAR 295
           I  + +
Sbjct: 292 IAARVK 297


>gi|322831688|ref|YP_004211715.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166889|gb|ADW72588.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 297

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 139/290 (47%), Gaps = 8/290 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V  SGSF+ AAE + L +S+++RQ+  LE+E+G+KL +R +R L++TEQG  
Sbjct: 5   ENMRTFVQVVDSGSFSRAAELMDLPKSTVTRQVQALESELGVKLLHRTSRRLSMTEQGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++E     +Q ++  P GK+R+     +    +   L  FL+ YPD+Q++
Sbjct: 65  YYHGAIRLLDQMEILDSNVQAATQAPRGKIRVEMPNAIAYRRVIPALPGFLMHYPDVQVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + N+  D+     DC IR+ + + + +LI R L  + M   AAP YL+    P   Q+
Sbjct: 125 VSVGNRTADLIAQNIDCVIRIGE-LHNDALIARSLGVLPMITCAAPAYLQKHGMPEHPQD 183

Query: 186 LD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L   H L+      P+    F      D+     R      VN   + +   + G G+  
Sbjct: 184 LILDHTLVQIAS--PQTGRVFEHQVFKDQQCVTVRGRWQFSVNDSTAALTGAIAGLGVLT 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++ +   DN  LV +  +       V+  +PE      K++ F  ++
Sbjct: 242 TYRFLAQEALDNGALVPLFPEWADEQVPVHIAWPENRHLPSKVRYFIEWV 291


>gi|260770382|ref|ZP_05879315.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|260615720|gb|EEX40906.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
          Length = 306

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 142/300 (47%), Gaps = 21/300 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + +F  V   GSF+ AAE+L +++S++S++++ LE E+GI+L  R  R L+LT
Sbjct: 2   MDNTFAAIPIFVAVVECGSFSSAAEKLSITKSAVSKRVTQLEDELGIRLLNRTTRKLSLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   S+     +     + E   +P GKL+I   +  G   +   + EFL  YP
Sbjct: 62  EAGERYYYHVSQALSFAQQGSDAVTELQGEPQGKLKITAPMSFGVLHVATLIAEFLTRYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L L+++ +D+     D AIR+   +  S+L+ ++LV        +P YL     P
Sbjct: 122 KVEIDLQLEDQMVDLVQGGFDLAIRIGH-LPVSNLVAKRLVRCRSVLCCSPDYLSRHPAP 180

Query: 181 LSIQELDKHNLITFGDL-------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
               +L +HN + +            +   DF  + T +          L +N+  +I +
Sbjct: 181 QKPADLLQHNCLVYSYFRGGSEWTFTQNGSDFKVIPTGN----------LSINNSEAIRR 230

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GI  LP ++V  +     L  IM D   P   +Y  +PE      K++AF  FI
Sbjct: 231 ALLDGLGIGQLPTFLVSKDIRAGKLHAIMTDYPLPEHAIYAVFPERKHLPHKVRAFMEFI 290


>gi|49084442|gb|AAT51201.1| PA1328 [synthetic construct]
          Length = 303

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126
             T + Y  L   +  L ES  +PSG+LRI + + L +NL +   L EF+  YP +Q+++
Sbjct: 70  EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +L
Sbjct: 129 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEYGTPASVADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGI--AL 243
           D H  + F    P+      W    D    E  +    V++   +I++    G+GI  A 
Sbjct: 189 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTGAIIEAARAGAGIAQAF 246

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299


>gi|24372117|ref|NP_716159.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24346007|gb|AAN53604.1|AE015500_3 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 310

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 139/296 (46%), Gaps = 15/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L L+++++SR+I+ LE + G +L +R  R L LTE 
Sbjct: 1   MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELEADTGTQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   +++   L++ + +L        G L+I   I+LGQ  L     +FL LYPDI
Sbjct: 61  GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAKFLTLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I   L N+ +D+  +  D   ++      S L    LV  +    A+P YL     P  
Sbjct: 121 TIDAELTNRKVDVIEEGIDLLFQIADS-HDSRLQSYSLVNAYKSLMASPKYLAEHGTPKV 179

Query: 183 IQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            Q+L KH  I       +   K  +  +W+      + EP ++ L VN+     +  + G
Sbjct: 180 PQDLAKHKAIRLQSAHIEGAWKLFDGKSWV------VIEP-VTQLTVNNVTIAREAAIAG 232

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GI  +P  I ++      LV +++D       V   YP+      K + F  FI+
Sbjct: 233 LGITAVPSIIAQEAVEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIY 288


>gi|330967181|gb|EGH67441.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 297

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 130/273 (47%), Gaps = 6/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F V+ R GSFT AA QL +SQS++S  +  LE  +G++L  R  R ++ TE G +
Sbjct: 7   NDLQAFVVITREGSFTRAAAQLGVSQSALSHTMRALEARLGVRLLTRTTRSVSPTEAGQR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++  +  + ++E     + E    P+G +RI  +     N+L   L + L  YPDI+++
Sbjct: 67  LYQSMAPRFDEIELELAAVSEFRNTPAGNVRIQASEHAANNILWPKLLKVLPDYPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    DI     D  +RL   +    +      ++ +    +P Y K  + P   ++
Sbjct: 127 ITVDYALSDIVAQRYDAGVRLGDQVAKDMIAVPIGPSLRIAVVGSPEYFKQRQIPREPRD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN I     +P       W    D    + R+      NS + I++  V G G+  L
Sbjct: 187 LAAHNCINL--RLPTHGSLMQWDFEKDGHELKARVEGQWTFNSSVPILRAAVAGCGLGFL 244

Query: 245 P-DYIVKD--NPNLVRIMEDVITPSFTVYFCYP 274
           P D + K+  + +L+R++ED   P    +  YP
Sbjct: 245 PEDMVAKELADGSLLRVLEDWCQPFAGYHIYYP 277


>gi|239816232|ref|YP_002945142.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802809|gb|ACS19876.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 298

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +ARSG+   AA +L +  ++++R+I  LE EVG  LF R + G  LTE 
Sbjct: 1   MDWDNLRYFLELARSGTLMSAARRLEVDHTTVARRIQALEKEVGAPLFSRESGGHRLTEA 60

Query: 63  GSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G KL          +  +E+T    QE     SG +RI  T   G  +L   L  F   +
Sbjct: 61  GRKLQPQVEAMESAFQAVESTAPASQEGL---SGLIRIGATEGFGTVVLAPQLALFAQQH 117

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I L+   + + +S   AD  I L +P +   ++  KL    +  YA+  YL   + 
Sbjct: 118 PRLTIDLLAMPRLVHLSRREADIVISLERPARGPVVVS-KLTDYTLRLYASKKYLAAHKP 176

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + ++L  H  I++ D +    ++  +L  + RP        L+  S L+  +  + G+
Sbjct: 177 IKTREDLRGHTFISYVDDL-LFSKELQYLDELHRPDA----FALRSTSVLAQHRAVLAGA 231

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+LP +I +++  L  ++      + T +   P   K+  +++A   F+
Sbjct: 232 GIAVLPAFIAENDGALKPVLPGQANFTRTFWMSMPAETKHLVRMQAVWEFL 282


>gi|308185578|ref|YP_003929709.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1]
 gi|308056088|gb|ADO08260.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1]
          Length = 298

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 137/297 (46%), Gaps = 19/297 (6%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+F  W  + +F +VA  GSFT AAE+  L +SS+S++IS LE  +GI+L  R  R L L
Sbjct: 1   MAFRQWQDMALFALVAECGSFTGAAERAGLPKSSVSQRISQLEQRLGIRLLNRTTRQLNL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G +      E+    E     +      PSG+LRI +   +G  LL     EFL LY
Sbjct: 61  TFAGERYLLHCQEMMQASERADQAIASLRENPSGRLRITSPAGIGATLLARCNAEFLRLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ + + + ++  D+  +  D A+R  +P Q SSLI R++        A+ HYL     
Sbjct: 121 PDVTLDVSISDEMRDLVQEGFDVALRTGQP-QESSLIGRRIGNCPRLLVASQHYLNQHPP 179

Query: 180 PLSIQELDKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            L  Q+L  H  I        ++ +  E + WL     P G         ++ L   +  
Sbjct: 180 LLHPQQLSAHRCIAHRAWNEWVLQRDDEFYRWLL----PPGH------LTDNLLYARESA 229

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +GI LLP ++      +P LV ++ D       ++  YP    N+  L  F  F
Sbjct: 230 LGDAGITLLPHFLTDGAMADPRLVPVLPDWEVEGNELWLVYPGRKLNSPALARFIEF 286


>gi|261339009|ref|ZP_05966867.1| hypothetical protein ENTCAN_05214 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318840|gb|EFC57778.1| LysR-family transcriptional activator [Enterobacter cancerogenus
           ATCC 35316]
          Length = 299

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 141/290 (48%), Gaps = 20/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA +  L +SS+S++IS LE +VGI+L  R  R L+LT  G    
Sbjct: 8   MALFALVAEMGSFTAAARKADLPKSSVSQRISQLEQQVGIRLLNRTTRRLSLTFAGEHYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E  +  +Q     PSG+LRI     +G  LL     EF L YPD+ + + 
Sbjct: 68  VHCREMLAASERAEYAIQRLRDNPSGRLRITCPAGIGATLLAHMNAEFQLRYPDVSLDVS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186
           + +  +D+     D A+R  KP Q SSLI R +     +  A+P YL   REPL+   +L
Sbjct: 128 ISDDVLDLVESGYDVALRTGKP-QDSSLIGRMIGHCPRYMLASPGYLAR-REPLTHPSQL 185

Query: 187 DKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H  IT       ++ +  ED+ +L            +    ++ +   +  V G+GI 
Sbjct: 186 VGHRCITHRAWSEWVLQRASEDYRYLPD----------NAHMTDNLVYARECAVAGAGIT 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +LP ++++D      LV+++ +       ++  YP    N+  L ++ +F
Sbjct: 236 MLPAFLLEDKIETGALVKVLPEWNVEGNDLWLAYPSRKLNSPALMSYIDF 285


>gi|170692906|ref|ZP_02884067.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141904|gb|EDT10071.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 334

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 143/287 (49%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q  + KP GKLRI     +G+ L+   L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPQLCEFHKRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC +R+   +Q SSL+ R++      + A+P Y++    P S+++L+
Sbjct: 127 LSDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVSCASPEYIERAGMPTSLEDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +     +     +W   VD    E ++ S + VN   + +   + G G+     
Sbjct: 186 NHKAVNY--FSSRTGRTLDWAFLVDGKEVEVKMKSIVSVNDADAYVTCGLEGFGLIQPAL 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  +     LV ++ ++      +   YP +   + K++ F ++I
Sbjct: 244 FMVLPHLRAGQLVEVLPEMKPLPMPISAVYPHSRHLSPKVRVFVDWI 290


>gi|254254847|ref|ZP_04948164.1| regulatory protein LysR [Burkholderia dolosa AUO158]
 gi|124899492|gb|EAY71335.1| regulatory protein LysR [Burkholderia dolosa AUO158]
          Length = 352

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 150/302 (49%), Gaps = 35/302 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF VV R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE G +
Sbjct: 51  DDLRVFSVVVRLASFSAAAEQLGVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTEAGER 110

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++    ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + ++
Sbjct: 111 VYARAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVVAPALLDFTARYPQLNVR 170

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  +R+   + +  LI R+L   +    A+P YL     P S+ +
Sbjct: 171 LDLFDRLVDVAGEGYDLDVRIGDEV-ADHLIARRLAANYRVLCASPDYLARRGTPRSLAD 229

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233
           L  H+ +   +               D P G  R+      + ++V   LS       +Q
Sbjct: 230 LASHDCLAIKER--------------DHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQ 275

Query: 234 YCVLGSGIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + + G GI L    I +  P      L R++ D I P+  ++  YPE +  + K++   +
Sbjct: 276 WALAGRGIVLRS--IWEAGPLIERRALCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVD 332

Query: 289 FI 290
           F+
Sbjct: 333 FL 334


>gi|83749210|ref|ZP_00946211.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207743886|ref|YP_002260278.1| predicted xylanase/chitin deacetylase protein [Ralstonia
           solanacearum IPO1609]
 gi|83724104|gb|EAP71281.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206595286|emb|CAQ62213.1| predicted xylanase/chitin deacetylase protein [Ralstonia
           solanacearum IPO1609]
          Length = 299

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 134/290 (46%), Gaps = 10/290 (3%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L    +  R+   GS + AA +L LS     RQ+  LE  +G+KL  R  R  +LT+ 
Sbjct: 2   DRLAAMQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGALGVKLLNRTTRRQSLTDG 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  ++E  Q ++ ES   P G+LRI+  I  G   L   L EF+  +PDI
Sbjct: 62  GRLFYERAKNILAEMEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L N+ +D+  +  D A R    +  S L+ R+L    +   A+P YLK   +P +
Sbjct: 122 TVELSLTNRTVDLVEEAFDAAFRT-GDLPDSGLMARRLAPHRLTLCASPAYLKMRGQPRT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L KH  + F     +    F+     D  +  P       +S  ++    V G GI 
Sbjct: 181 PEDLRKHECLVFAHTSLRTQWSFDG---PDGSVKVPIKGRFLADSGEALRAAAVAGVGII 237

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L P  ++ ++     L RI++        ++  Y    + T KL++F +F
Sbjct: 238 LQPAELLAEDIQTGLLTRILKRYEPTPRPLHVLYAPDRRMTQKLRSFLDF 287


>gi|325920481|ref|ZP_08182408.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325549061|gb|EGD19988.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 308

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 141/297 (47%), Gaps = 17/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + + L  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAETLHMSRASVTQVVQQLEARLRVTLLNRTTRRVHVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L ++S  P G+LR+     L + +L   L  F   YPDIQ+
Sbjct: 64  AYYERVLRLLADMDDAETSLSDASALPRGRLRVDVPSPLARLILMPALPTFHARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R    I   SLI R++  +    YAAP YL+    P   Q
Sbjct: 124 DMGVSDRRVDLIGENVDCVVR-GGIITDQSLIARRVGDLQAGVYAAPSYLQRLGTPAHPQ 182

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+  +H  + F        +P  M+  N    +    G   ++    N+YL+     + 
Sbjct: 183 ELENTQHRCVGFMRWSNNKTVPYVMQRGNEAVNLQ---GRYVVASDDGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+  LP Y+ K    +  LV++ +D       +   +P     + KL+ F +++ 
Sbjct: 237 GMGVLWLPVYMAKAHLASGELVQLFDDWSLEPMPLSIAFPPNRHVSAKLRVFIDWVI 293


>gi|222082270|ref|YP_002541635.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726949|gb|ACM30038.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 300

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 130/259 (50%), Gaps = 8/259 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF      G FT AA    ++ S++S+ IS LE  +G +L  R  R L LT +G   
Sbjct: 11  EMEVFVRAVELGGFTAAATACRMTPSAVSKLISRLEARLGARLINRSTRRLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +   +   +     +  + +G +RI T+   G ++L   +  F+ LYP + +++
Sbjct: 71  YERSIAILADIAEAE-RYASAGEEAAGPIRINTSGSFGNHVLAPLIPSFMALYPAVSLEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +K +D+  + AD AIR   P+++SSL  RKL T      A+P YL+    P SI EL
Sbjct: 130 VHTDKVVDLMEERADVAIRT-GPLKNSSLTARKLGTTRKIIVASPDYLRRRGTPRSIDEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            KH  I F     + +E +  L +  + +  P    LQV+   ++    + G+G+A LP 
Sbjct: 189 QKHGRIGFA--YARAVEGWPLL-SAGKTMEVPVTPGLQVSDGEAMRHLALAGAGLARLPA 245

Query: 247 YIVK---DNPNLVRIMEDV 262
           + VK   +   L  ++ED+
Sbjct: 246 FTVKADIEAGRLAPVLEDI 264


>gi|50122764|ref|YP_051931.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613290|emb|CAG76741.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 301

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 133/283 (46%), Gaps = 7/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF  AAE LH+  S+++R I  LE+ +G +L  R  R L++T+ G + +
Sbjct: 7   METFIRVVDAGSFKKAAETLHVLPSTVTRSIKELESHLGARLLNRTTRALSITDVGLRYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +    +   +  G +RI  T  L +N L   L +F   +P I++   
Sbjct: 67  DSCKAILRDVHAAESVTAQQKEELQGTIRIGATPSLVKNFLIPALPDFCERHPGIRLDFH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI     DC IR  +P   S L+ R+L T   H  A+P YL+    P ++  L 
Sbjct: 127 LGDATVDIVQQGIDCVIRTGEP-PLSRLVARRLGTFQWHICASPRYLEQHGHPTTVDSLK 185

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +     +     +W        +  PR   + VN   + +   V G G+  +  
Sbjct: 186 EHTAVGYTH--SRTGRSTSWGFHDEAHTVAIPRAGQISVNDTDAYVAAGVAGLGLLRIAS 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           Y+V+    + +LVR++ D+ +P   ++  YP++   +  ++AF
Sbjct: 244 YMVRQQLSDGHLVRLLPDIGSPFEPIFILYPQSRHLSPAIRAF 286


>gi|15596525|ref|NP_250019.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|254239699|ref|ZP_04933021.1| hypothetical protein PA2G_00322 [Pseudomonas aeruginosa 2192]
 gi|9947267|gb|AAG04717.1|AE004562_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126193077|gb|EAZ57140.1| hypothetical protein PA2G_00322 [Pseudomonas aeruginosa 2192]
          Length = 302

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126
             T + Y  L   +  L ES  +PSG+LRI + + L +NL +   L EF+  YP +Q+++
Sbjct: 70  EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +L
Sbjct: 129 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEYGTPASVADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGSGI--AL 243
           D H  + F    P+      W    D    E  +    V++   +I++    G+GI  A 
Sbjct: 189 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTEAIIEAARAGAGIAQAF 246

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299


>gi|113867880|ref|YP_726369.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526656|emb|CAJ93001.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 302

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 144/300 (48%), Gaps = 9/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD L+ F  V +SGS   AA  LH++ S++ R+++ LE  +G  LF RHA G  +T  G
Sbjct: 5   DWDDLKYFLAVGQSGSLAGAARALHVNHSTVLRRLARLEETLGTLLFERHATGYAMTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    + V  +++  Q +L     + SG LR+ TT  L   LL     EF  ++P IQ
Sbjct: 65  EALAHRLAGVGEQIDAAQRQLSGLDSQLSGPLRVTTTDTLLGGLLMPLFAEFRSMHPRIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++++N  + +S   AD AIR   P  +    L+ R++  +    YAA  YL+    P 
Sbjct: 125 LQIVVNNSFLSLSRREADVAIR---PANAPPEYLVGRRIGRLQTAPYAARRYLQQLGLPT 181

Query: 182 SIQELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
                   +   +  ++P + +        +   + EPR   +  +S +++      G G
Sbjct: 182 EADHPRLADWSAYDWVVPDEALSHLAQARWIRDHVPEPR-RAVSADSLVAMADAVRHGMG 240

Query: 241 IALLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +L   +   +P LVR+   DV   +      +P+ L+++ +++   +F++ + R  ++
Sbjct: 241 AGMLLCLLAGADPELVRLAPVDVAMDTDLWVLTHPD-LRHSARVRVLGDFLYERLRQGEW 299


>gi|78064788|ref|YP_367557.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965533|gb|ABB06913.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 294

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 132/284 (46%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLTE+G   +  
Sbjct: 9   AFVRTAEALSFVAAGRTLGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTEEGRHFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +       +  +  S+ +P G+LR++  + +G   L   L EF   YPD+++ L  +
Sbjct: 69  CQRILEDFRDAEATVTASAQRPRGRLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + ++L+ H
Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTPRDLEAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +    P   +  +W    D        + L  N+  ++    + G GI  +PD++ 
Sbjct: 187 ECVRY--CFPTTGKLQDWALAADDGTPLKLRTALTCNNMEALRGTVLAGLGIGYMPDFLA 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +D   +  LV +++D           +P + + + KL+ F +F+
Sbjct: 245 RDALEHGELVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288


>gi|319793059|ref|YP_004154699.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595522|gb|ADU36588.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 302

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 133/291 (45%), Gaps = 12/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +ARSG+   AA +L +  ++++R+I  LE EVG  LF R A G  LTE 
Sbjct: 1   MDWDNLRYFLELARSGTLMSAARRLEVDHTTVARRIQSLEKEVGAPLFSREAGGHRLTEA 60

Query: 63  GSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G +L          +  +E+T    QE     SG +RI  T   G  +L   L  F   +
Sbjct: 61  GRRLQPQVEAMESAFQAVESTAPASQEGL---SGLVRIGATEGFGTVVLAPQLALFAAQH 117

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I L+   + + +S   AD  I L +P +   ++  KL    +  YA+  YL   + 
Sbjct: 118 PKLTIDLLAMPRLVHLSRREADIVISLERPARGPVVVT-KLTDYTLRLYASKQYLAAHKP 176

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + ++L  H  I++ D +    E   +L  + RP        L+  S L+     V G+
Sbjct: 177 IKTREDLRGHTFISYVDDLLFSKE-LQYLDELHRPDA----FALRSTSVLAQHSAVVAGA 231

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+LP ++   +  L  ++      + T +   P   K+  +++    F+
Sbjct: 232 GIAVLPAFVADGDKGLRTVLPAQANFTRTFWMSMPAETKHLARMQTVWEFL 282


>gi|75675173|ref|YP_317594.1| LysR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74420043|gb|ABA04242.1| transcriptional regulator, LysR family [Nitrobacter winogradskyi
           Nb-255]
          Length = 304

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 9/251 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF  AA  L LS++++S+ +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEALAIFAKVVELRSFAGAAADLGLSKATVSKAVSRLEDRLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    + +    E  + E    S  P G +R+A  +  G N++   L  FL +YP++ 
Sbjct: 66  KNLSERAARLLADGEAAENEALARSTVPRGLVRLAVPMTFGVNVIAPLLPGFLAMYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   +  +D+  +  D  +R+   +  SSL+ R+L  +  H  A+P YLK    P   
Sbjct: 126 VDLHFSDAMVDLIGEGFDVGVRIAS-LPDSSLLARRLCPMPRHTVASPAYLKAHGRPTHP 184

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             L +H+ + +  L  P      N        RP G      L+VN+  +++   + G G
Sbjct: 185 MHLAQHSCLGYAYLSTPGVWRYVNARGEQAAVRPSGR-----LRVNNGEALLPAIIAGLG 239

Query: 241 IALLPDYIVKD 251
           IA LP++I+ D
Sbjct: 240 IADLPEFIIGD 250


>gi|91782384|ref|YP_557590.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686338|gb|ABE29538.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 305

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 145/296 (48%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE G+
Sbjct: 4   FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++   +  L      P+G +R+ T+  L + LL   L +F   YP+I +
Sbjct: 64  LFYERCVRILAEVAEAESSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPEIDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +++ID+  D  DC IR+  P + SSL+ R++    +   A+P YL+   EP +++
Sbjct: 124 RLGLADRNIDLIQDGVDCVIRMGTP-EESSLVARRIGQARIVTCASPAYLEKYGEPTTLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L +H  + +  +  +    F +   VD  + +  + S L VN     +   VLG GI  
Sbjct: 183 ALSEHRAVNY--VSARTGRTFPFEYEVDGELAKVTLKSVLAVNDGSVYIGAAVLGHGIIQ 240

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              ++V D  N   L  I+    +P   +   Y      + +L+AF  ++   AR+
Sbjct: 241 PSRFMVSDLINQGALKEILTTYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARN 296


>gi|167814425|ref|ZP_02446105.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           91]
          Length = 322

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 67  EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290


>gi|330808800|ref|YP_004353262.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376908|gb|AEA68258.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 302

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 146/299 (48%), Gaps = 7/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LRVF  VA+ GSFT AAEQL +++S  S  +  LE +VG +L  R+ R + LT  
Sbjct: 1   MELNDLRVFCRVAQLGSFTKAAEQLGVAKSRASAIVRTLEADVGSRLLQRNTRSVRLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+  + +  Q   + ++    G++R+      GQ L+  +L+E L  +P +
Sbjct: 61  GELFFERCRELLRESDHLQGMFRPAAGALQGRVRLDMPSLFGQELVMPHLQELLSAHPLL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++ ++++ +D+  +  DC IR+  P+  S L+ RKL T+     A+P YL+    P S
Sbjct: 121 DLRISINDRRVDMIQEGVDCLIRI-GPLPDSDLVARKLGTMKACNLASPAYLRQYGVPSS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGI 241
           + +L  H +I + + +    E+  W   VD  +   P +S L +NS   ++  C  G GI
Sbjct: 180 LTDLAGHRVIHYANNLRS--EEAAWRYAVDGEVQSVPMVSALAINSGSLLLAACRNGLGI 237

Query: 242 ---ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              ++     + D+  LV ++ +   P        P       +++A  N++    R +
Sbjct: 238 MQVSVPASQRLIDSGELVEVLPEFRPPPIQASLLLPHRRHVAPRVEAVLNWLTQVTRPY 296


>gi|323525836|ref|YP_004227989.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382838|gb|ADX54929.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 333

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 129/286 (45%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE G+  
Sbjct: 6   SMRVFVRVADLGSFVRAANALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTEAGATY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE  +  L     +P G LRI   +  G   L   ++ +   YP++   +
Sbjct: 66  LERVRHILDDLEGVEQMLAARHHEPVGTLRIVAPVVFGLQSLAPAVQSYAARYPEVVPDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  D+  +  D  I + +P +S+S++ R+L T  +   A P YL     P    +L
Sbjct: 126 TLADRQADLVEEGFDVGIMVGRPARSASIVTRRLTTCQLTVCATPDYLAQHGTPARPGDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
             H  ++      +  E          P G  R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 LAHPCLS------RPPEQGGEERLFSGPEGLVRVRTANAIAANNSEMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LV ++ D   P   +   YP  L    K++ F
Sbjct: 240 LPSYLIGRDLAAGRLVELLRDYRLPEIEITIAYPSRLHLPAKVRTF 285


>gi|254713362|ref|ZP_05175173.1| transcriptional regulatory protein [Brucella ceti M644/93/1]
 gi|254716283|ref|ZP_05178094.1| transcriptional regulatory protein [Brucella ceti M13/05/1]
 gi|261218062|ref|ZP_05932343.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261321090|ref|ZP_05960287.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|260923151|gb|EEX89719.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293780|gb|EEX97276.1| transcriptional regulator [Brucella ceti M644/93/1]
          Length = 297

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G +L 
Sbjct: 9   LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI I+L 
Sbjct: 69  AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+  +  D  +R  K +    +  R    I +   A P +L+   +P   Q+L 
Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPVATVATPAFLEKGGKPKRPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+ I     +P   E F W  T  R   + RI+    L   S   ++Q C+ G G+A L
Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P DY  +  ++  LV ++ D        +  YP   ++   L A 
Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFAGYHLYYPNRRQHPPALAAL 289


>gi|295098522|emb|CBK87612.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 299

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 141/290 (48%), Gaps = 20/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA++  L +SS+S++IS LE +VGI+L  R  R ++LT  G    
Sbjct: 8   MALFALVAEMGSFTAAAQKAELPKSSVSQRISQLEQQVGIRLLNRTTRRISLTFAGEHYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E  +  +Q     PSG+LRI     +G  LL     EF L YPD+ + + 
Sbjct: 68  VHCREMLAASERAEYAIQRLRENPSGRLRITCPAGIGATLLAHMNAEFQLRYPDVSLDVS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186
           + +  +D+     D A+R  KP Q SSLI R +     +  A+PHYL   R PL   ++L
Sbjct: 128 ISDDVVDLVESGFDVALRTGKP-QDSSLIGRMIGHCPRYMLASPHYLAR-RAPLIHPRQL 185

Query: 187 DKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  IT       L+    ED+ +L            +    ++ +   +  + G+GI 
Sbjct: 186 VEHRCITHRAWSEWLLRSESEDYRYLPD----------NAHMTDNLVYARECAIAGAGIT 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LLP ++++D      LV+++         ++  YP    N+  L ++ +F
Sbjct: 236 LLPAFLLEDKIEKGALVKVLPAWSVEGNDLWLAYPSRKLNSPALMSYIDF 285


>gi|254473821|ref|ZP_05087216.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211957207|gb|EEA92412.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 306

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 141/289 (48%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF +V     F  AA +L +S+S++S++I+ LE  +G +L  R  R ++LTE G   +
Sbjct: 7   LPVFVMVVEHQGFAAAARELGVSKSAVSKRITLLEEHLGARLLNRSTRNISLTEAGELYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +     +  +  + +   KP G+L+I   +  G+  +   + +FL L P+I I +I
Sbjct: 67  ARAVDALEAAKEAESAVAQMQGKPKGRLKINVPMTFGRLHIAPLIPKFLKLNPEISIDMI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D++ ID+     D AIR  + ++ SSLI RK+        A+P YL+    P + Q+L 
Sbjct: 127 MDDRTIDLVDGGFDLAIRGGR-LKDSSLIARKITPCFNVLAASPQYLEEHGTPATPQDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            HN + +        +   W  T++ P G+ R+      QVN+  ++    + G GI  L
Sbjct: 186 NHNCLHYAYF----SDQHEW--TLEDPQGQVRVETSGNYQVNNGDALTTAVLGGCGIGRL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +   +   +  L +++ +   P+ T+Y  YP       K + F NFI
Sbjct: 240 TTFAAGEYLRSGALTQVLPNYTLPTQTMYAVYPNRKYLPTKTRVFINFI 288


>gi|167737295|ref|ZP_02410069.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           14]
 gi|167909709|ref|ZP_02496800.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           112]
          Length = 320

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 67  EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290


>gi|91783793|ref|YP_558999.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687747|gb|ABE30947.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 309

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 138/305 (45%), Gaps = 24/305 (7%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +  SGSF  A   L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERMLNGMGVLTAIVDSGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT++G + +     +   LE       + +    G+LR+       + +L   L  F+ 
Sbjct: 61  VLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFID 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+Q++LI  ++  D+  D  D AIR   P   S+LI RKL+   +   AAP YLK  
Sbjct: 121 RHPDLQLELITRDQLGDMVADGFDLAIRFGDP-PVSTLIARKLLDTRILTVAAPSYLKKH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYL 229
             P +  EL+  KH  I F D  P     F+W     R      P G      L VN   
Sbjct: 180 GHPANPAELESGKHVCIKFRD--PLTGYPFSWEFHRGRKKIVVTPQGR-----LTVNDVG 232

Query: 230 SIMQYCVLGSGIA----LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           ++   CV G G+A    L  + +V     LV +  D     + +Y  YP       K++A
Sbjct: 233 TLHSACVAGQGVAQILELGAESLVASG-KLVALFPDWCDEVYPLYALYPSRHHPPAKVRA 291

Query: 286 FRNFI 290
           F  FI
Sbjct: 292 FFEFI 296


>gi|152989498|ref|YP_001346893.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964656|gb|ABR86681.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 302

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA +G FT AAE++ +S S ISRQ++ LE  +  +L YR  R ++L+E G 
Sbjct: 4   WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     + + S +P G LR+   +  G+  +   +  F+  YP +++
Sbjct: 64  TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  S L+  +L    M+  A P YL+    P S  
Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCATPEYLRRHGTPQSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL + N +     +   +ED     T  R  G  R      NS  +++   + G G+  L
Sbjct: 183 ELGQFNCLIGSSDLWSFLEDGR--ETQHRVQGNWR-----CNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V D   +  LV +++    P+  V+  YP+    + K++   +++
Sbjct: 236 PDYYVIDHLRSGRLVSLLQGHQPPNTAVWALYPQQRHLSPKVRQLVDYL 284


>gi|218891710|ref|YP_002440577.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235326|ref|ZP_04928649.1| hypothetical protein PACG_01226 [Pseudomonas aeruginosa C3719]
 gi|254240756|ref|ZP_04934078.1| hypothetical protein PA2G_01422 [Pseudomonas aeruginosa 2192]
 gi|126167257|gb|EAZ52768.1| hypothetical protein PACG_01226 [Pseudomonas aeruginosa C3719]
 gi|126194134|gb|EAZ58197.1| hypothetical protein PA2G_01422 [Pseudomonas aeruginosa 2192]
 gi|218771936|emb|CAW27715.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 297

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 144/287 (50%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR+  ++ L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPTLADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPAYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
             + +    P       W   + R  GE  P+I    V N+  + + + +   GIA LPD
Sbjct: 186 TCLHY--RFPNTGRLEEW--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++      LV +++         +  +P   + + KL+AF +F+
Sbjct: 242 FSIREALREGRLVSVLDTFCERRARFFLLWPSGRQVSPKLRAFIDFV 288


>gi|260550884|ref|ZP_05825090.1| LysR family transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406011|gb|EEW99497.1| LysR family transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 345

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 9   MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YPDI + + 
Sbjct: 69  DRTARILADVSDIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP SI++L 
Sbjct: 129 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 187

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           K H  I F     +   +F+W   VD  I    +   + VN   + +   + G GI   P
Sbjct: 188 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 245

Query: 246 DYIVKDN 252
            Y++ ++
Sbjct: 246 RYMLTNH 252


>gi|91781567|ref|YP_556773.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91685521|gb|ABE28721.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 312

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 150/294 (51%), Gaps = 21/294 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +LE  +  +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQVLAELEEAEQAVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R++ T H+   A+P YLK    P ++ +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPGGLKSSSLIARQIATAHLVLCASPAYLKRHGTPKTVADL 186

Query: 187 DKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240
            +HN + +      ++ P   E  + +          R++   + ++L   +  VL G+G
Sbjct: 187 ARHNYLQYAGVSALEIAPATGEASSRV----------RLTGNLIVNHLEAQRVIVLQGAG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           IA+L   ++ D+     LV ++ D + P    +Y  Y      + K+++F +F+
Sbjct: 237 IAMLGTEVIGDDLAAGRLVPLLVDDVPPRELPIYVVYASRRHLSAKVRSFVDFL 290


>gi|254250951|ref|ZP_04944269.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124893560|gb|EAY67440.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 294

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 134/284 (47%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G   +  
Sbjct: 9   AFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEGRHFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L   +  +  S+ +P G+LR++  + +G   L   L EF   YPD+++ L  +
Sbjct: 69  CQRILEDLRDAEATVTASAQQPRGRLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D AIR   P+  SSL+ R+L        A P YL     P + ++L+ H
Sbjct: 128 DRMVDVVEGGFDAAIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPHAPRDLETH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + +    P   +  +W    D        + +  N+  ++    + G GI  +PD++ 
Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +D      LV +++D           +P + + + KL+ F +F+
Sbjct: 245 RDALERGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288


>gi|15597512|ref|NP_251006.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9948349|gb|AAG05704.1|AE004657_11 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 297

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 144/287 (50%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR+  ++ L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPTLADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPAYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
             + +    P       W   + R  GE  P+I    V N+  + + + +   GIA LPD
Sbjct: 186 TCLHY--RFPNTGRLEEW--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++      LV +++         +  +P   + + KL+AF +F+
Sbjct: 242 FSIREALREGRLVSVLDAFCERRAQFFLLWPSGRQVSPKLRAFIDFV 288


>gi|27379710|ref|NP_771239.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27352862|dbj|BAC49864.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 297

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 131/277 (47%), Gaps = 10/277 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L  F +VAR GSFT AA +L +SQS++S  I  LE  + ++L  R  R ++ T  G
Sbjct: 5   NLDDLAAFLIVAREGSFTRAAAKLGISQSALSYTIKELEARLKLRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R       ++ET  + L E   KPSG +RI  T      +L   L + L  YPDI+
Sbjct: 65  ERLLRNVGPRIAEIETELVALTELREKPSGTIRITATEYATDAVLLPKLAKLLREYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ D    DI     D  +R  + +    +  R      M    AP Y ++  EP   
Sbjct: 125 LEIVSDYGLTDIVAQRFDAGVRDGEQVARDMIAVRIGPDARMAVVGAPSYFRSRSEPKKP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
            +L +HN I     +P     ++W    ++   E ++     L  N+   ++Q  + G G
Sbjct: 185 SQLVEHNCINL--RLPTHGGLYSW--EFEKGSRELKVRVDGQLVFNTTTQMLQAALAGLG 240

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274
           +A LP+ +V+ + N   L R++ED   P    +  YP
Sbjct: 241 LAYLPEGLVRSHINKGRLKRVLEDWCPPYPGYHLYYP 277


>gi|300703398|ref|YP_003745000.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299071061|emb|CBJ42370.1| Transcriptional regulator, LysR family [Ralstonia solanacearum
           CFBP2957]
          Length = 294

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 125/257 (48%), Gaps = 6/257 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  VAR+ +   AA++L + Q+++ R+I+ LE E+  KLF R +  L LT  
Sbjct: 1   MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLALTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      + H   T +  +  +  + +G +R+ATT  L    +   + +    +P I
Sbjct: 61  GEALIGPAETMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRRRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +      +++   AD A+R  +P  +  LI R++ TI    YA+  YL+   EP+ 
Sbjct: 121 DIVCLASKSIANLTKREADVAVRTLRP-TAPDLIARRVATIETGLYASRGYLRARGEPVE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+    L P+    + W A    P+   R+  LQ +S ++I +  + G G++
Sbjct: 180 GSAFAGHDLV----LYPRNEVPWMWEALCGEPVAPSRV-VLQSSSAMTIFEAVIAGIGMS 234

Query: 243 LLPDYIVKDNPNLVRIM 259
            L       +P LVR++
Sbjct: 235 ELVCCRADLHPELVRVL 251


>gi|330820420|ref|YP_004349282.1| transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327372415|gb|AEA63770.1| transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 296

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 140/287 (48%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A  +L +S S++ + I+ LE  +G++LF+R  R +TLTE+G   H  
Sbjct: 9   AFVRTAETLSFVAAGRKLGISASAVGKTIARLERSLGVRLFHRTTRRVTLTEEGRHFHER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +L   +  L  S+  P G+LR++  + +G   L   L  F   YPDI++ L  +
Sbjct: 69  CHRILEELRDAEATLSASAQTPRGRLRVSLPV-IGYRFLLPVLPAFSARYPDIELDLDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D  IR  + +  SSL+ R+L        A+P YL     P  + +L  H
Sbjct: 128 DRLVDVVEGGFDAVIRSGQ-LSDSSLMSRRLGPFRFVLCASPDYLARAGVPRGLADLAAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +       ++ ++ L     P   P + C +  N+  ++    + G GI  +PD++
Sbjct: 187 EGVRYRFPTTGKLQPWSLLPDGGEP---PNLRCAMTCNNMEALRGAVIAGFGIGFMPDFL 243

Query: 249 VKD---NPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +D     +LV ++E   ++   F++   +P + + + KL+ F +F+
Sbjct: 244 ARDALAAGSLVEVLEPHSIVPGQFSIL--WPSSRQLSPKLRVFVDFM 288


>gi|86158624|ref|YP_465409.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775135|gb|ABC81972.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 337

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 136/296 (45%), Gaps = 18/296 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+   V  +G  T AA +L L +S++SR+++ LE  +G++L  R+AR L LTE G  
Sbjct: 9   DDLRLLVEVVATGGLTAAAARLGLRKSTVSRRLAALEERLGVRLLERNARRLRLTEAGRA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   + +  +      E  E+   P G LRIAT   LG+ LL   + E LL +P + ++
Sbjct: 69  YHARAARLVAEARALDRETAEARGAPQGTLRIATPALLGE-LLAPAVAELLLRHPRLSVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L    +D+  +  D A+R   P+  SSL+ R+L T+    YA+P YL     P +   
Sbjct: 128 VALAPPHVDLLAEEHDLALRT-GPLADSSLVARRLGTLRTGCYASPAYLARRGTPATADA 186

Query: 186 LDKHNLITFGD--LIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           L         D  L+ +   D  W       A   RP G      L+V S  +       
Sbjct: 187 LRGEGDAGAHDCILLAEAGTDEVWFFGAGATARTVRPAGR-----LRVPSVRAGQLAARA 241

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  LP  +V ++     LV ++E    P   V+  YP       K++AF   +
Sbjct: 242 GLGVVRLPAALVAEDVRSGRLVAVLEAETPPGMPVHAVYPSGRHLAPKVRAFLELV 297


>gi|184158822|ref|YP_001847161.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|183210416|gb|ACC57814.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322507365|gb|ADX02819.1| Transcriptional regulator LysR family [Acinetobacter baumannii
           1656-2]
 gi|323518737|gb|ADX93118.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
          Length = 343

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 7   MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YPDI + + 
Sbjct: 67  DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP SI++L 
Sbjct: 127 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 185

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           K H  I F     +   +F+W   VD  I    +   + VN   + +   + G GI   P
Sbjct: 186 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 243

Query: 246 DYIVKDN 252
            Y++ ++
Sbjct: 244 RYMLTNH 250


>gi|319638889|ref|ZP_07993647.1| LysR-family transcriptional regulator [Neisseria mucosa C102]
 gi|317399793|gb|EFV80456.1| LysR-family transcriptional regulator [Neisseria mucosa C102]
          Length = 296

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 139/289 (48%), Gaps = 14/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AA+QL +S +  S+ +S LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAADQLDISTAMASKHVSHLENTIQAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +      +   L E+   YP + + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGGNMSTWLAEYRQRYPKVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ ID+  +  D A+R+ K   S SLI + L  I     AAP YL     P + + + 
Sbjct: 127 LDNRHIDLIAEGFDLALRVSK-TPSPSLIVKPLAKIEFVLLAAPDYLARHGTPDTPEAVM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I     +P      NW  T  R  GE  I      ++ ++ L I +    G+GI  
Sbjct: 186 RHQAI-----LPSYTSQQNWEIT-HRQTGEKAILHLSPVIRSDNTLMIRELIKAGAGIGY 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            P + V+    +  LV+++ D    +  +   Y +    + K+++F +F
Sbjct: 240 QPLWAVQQELKDGTLVQLLPDYTIWTDQLNATYVDRAFLSAKVRSFIDF 288


>gi|254234449|ref|ZP_04927772.1| hypothetical protein PACG_00299 [Pseudomonas aeruginosa C3719]
 gi|126166380|gb|EAZ51891.1| hypothetical protein PACG_00299 [Pseudomonas aeruginosa C3719]
          Length = 302

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126
             T + Y  L   +  L ES  +PSG+LRI + + L +NL +   L EF+  YP +Q+++
Sbjct: 70  EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +L
Sbjct: 129 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEYGTPASVADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGSGI--AL 243
           D H  + F    P+      W    D    E  +    V++   +I++    G+GI  A 
Sbjct: 189 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTETIIEAARAGAGIAQAF 246

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299


>gi|296390295|ref|ZP_06879770.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 302

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126
             T + Y  L   +  L ES  +PSG+LRI + + L +NL +   L EF+  YP +Q+++
Sbjct: 70  EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +L
Sbjct: 129 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEHGTPASVADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGSGI--AL 243
           D H  + F    P+      W    D    E  +    V++   +I++    G+GI  A 
Sbjct: 189 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTEAIIEAARAGAGIAQAF 246

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299


>gi|167892989|ref|ZP_02480391.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           7894]
          Length = 324

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 67  EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290


>gi|115375470|ref|ZP_01462730.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115367513|gb|EAU66488.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 299

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 18/281 (6%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V  +G  T AAE+L L +S++SR+++ LE  +G +L  R+ R L LTE G + H   + +
Sbjct: 7   VVATGGITAAAERLGLRKSTVSRRLASLEARLGARLLERNTRRLRLTEAGREYHAHCARL 66

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
             +       L ES   P G LRIAT   LG+ LL   + EFLL  P +++++ L    +
Sbjct: 67  VAEAREVNKALIESRGTPQGTLRIATLSLLGE-LLTPLIAEFLLRQPRMRVEVSLAPAHV 125

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+  +  D A+R   P+  SSL+ R+L  +H   YA+P YL++   P   ++L  H+ + 
Sbjct: 126 DLIAEEYDLALRT-GPLVDSSLVMRRLGRLHTGCYASPAYLRHRGTPRVPEDLQGHDCV- 183

Query: 194 FGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
              L+ +   D  W      +    P+ E RI    V +  S  +    G G+  LP  +
Sbjct: 184 ---LLAEPGTDEVWFFGEGPSARTLPV-EGRIRVPSVRAGQSAARA---GLGVVRLPSSL 236

Query: 249 VKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           V D+     LV ++E    P   +   YP   +   K++AF
Sbjct: 237 VADDVRAGLLVPLLEAETPPGIPILAVYPSRPQLALKVRAF 277


>gi|296156417|ref|ZP_06839255.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893016|gb|EFG72796.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 334

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 3/205 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q  + KP GKLRI     +G+ L+  +L EF   YPDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y++    P S+++L+
Sbjct: 127 LTDRPVDLLQEGVDCVVRV-GALQDSSLVARRIGLFEGVTCAAPDYIERAGMPSSLEDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD 212
            H  + +     +     +W   VD
Sbjct: 186 NHKAVNY--FSSRTGRTLDWAFMVD 208


>gi|260427846|ref|ZP_05781825.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260422338|gb|EEX15589.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 297

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 21/284 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D D L +F+ +  +GSF  AA  L ++ S+IS++I+ +E  +G  LF R  R +TLT
Sbjct: 1   MSQDGD-LAIFHAILDAGSFAGAARHLGVTPSAISKRIAQMEGRLGAPLFVRTTRRMTLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G      T ++  +L   + E+ E      G +RI ++I LG+  +   + +F   YP
Sbjct: 60  EAGQTYAARTKDLLTQLSAAEDEIAEGIGAIRGPIRITSSIALGRRHVLPIVLDFSEAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L L +  +D+  D  D A+R    +  S LI R+L        AAP YL     P
Sbjct: 120 DVAVDLTLTDALVDLIEDGYDLAVR-SAALPDSGLISRRLAGNRRIICAAPGYLARHGAP 178

Query: 181 LSIQELDKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYC 235
               +L  H  +T     P    +  +D+      DRP+   R  SC   NS  ++   C
Sbjct: 179 TLPDDLAGHACLTLNMRGPFNAWRLGDDW------DRPLELGRGFSC---NSLDALHAAC 229

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPS--FTVYFCYP 274
           + G GIA LP ++V +   N  LV + +DV  P+   T+   +P
Sbjct: 230 LRGLGIARLPSFLVAEHIANGRLVALFDDVEGPAERSTISLLHP 273


>gi|301347431|ref|ZP_07228172.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB056]
 gi|301512549|ref|ZP_07237786.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB058]
 gi|301595885|ref|ZP_07240893.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB059]
 gi|332850421|ref|ZP_08432741.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332871859|ref|ZP_08440282.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332730692|gb|EGJ62003.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332731188|gb|EGJ62488.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 337

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 1   MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YPDI + + 
Sbjct: 61  DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP SI++L 
Sbjct: 121 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 179

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           K H  I F     +   +F+W   VD  I    +   + VN   + +   + G GI   P
Sbjct: 180 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 237

Query: 246 DYIVKDN 252
            Y++ ++
Sbjct: 238 RYMLTNH 244


>gi|167844474|ref|ZP_02469982.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           B7210]
          Length = 323

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 67  EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290


>gi|134292594|ref|YP_001116330.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135751|gb|ABO56865.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 313

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 131/287 (45%), Gaps = 15/287 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA +  F+HAA QL+LS S ++R +  LE+ +G+KL  R  R   LTE G +  
Sbjct: 1   MRVFLKVADTHHFSHAAHQLNLSPSLVTRYVGDLESHLGVKLLQRSTRKTVLTEVGVRYA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   L   +    + S +  G L +     L    L     E+   +P++ + + 
Sbjct: 61  QGCRSLLADLSEIESRATQESSRIGGDLNVVVLHSLMSPELAALFAEYQSRHPEVSLHIT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L   ++D+     DC I     I S S++ R L    + A A+P YL     P    +L 
Sbjct: 121 LTESEVDLLGGGFDCGIVADTMISSLSVVSRALAHAPLVAVASPGYLLAMTAPQQPADLA 180

Query: 188 KHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H ++        C     W+A   TVD    EPR++   VNS L   Q  + G GIALL
Sbjct: 181 AHRIVGVATGAKTC----RWVAPDGTVDALHVEPRVT---VNSALMQRQLALAGGGIALL 233

Query: 245 PDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           P++ V  +     L R++ D  +++    V   YP      GK++AF
Sbjct: 234 PEFAVASDLRSGALKRVLADYRLVSDGVAVSLVYPGREFLPGKVRAF 280


>gi|186471326|ref|YP_001862644.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197635|gb|ACC75598.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 305

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 150/300 (50%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  VAR  SF+ AAE L +S + +S++++ LE ++G +LF+R  R + +T+ G +
Sbjct: 8   DDLRVFCTVARQASFSAAAEALSVSAAYVSKRVAMLEADLGTRLFHRSTRRVAITDAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++    ++   ++    ++  +   P G LR++++   G++++   L      YP + ++
Sbjct: 68  VYAWAEKILDDVDRLVEDVSTTRRVPRGMLRVSSSFGFGRHVVAPALARLTERYPQLSVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  IR+   I ++ LI ++L + H    AAP YLK    P  + +
Sbjct: 128 LDLFDRIVDVAGEGFDLDIRIGDEI-AAHLIAKRLASNHRVLCAAPAYLKRHGTPRQLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLSI------MQ 233
           L  H  +   +               D P G  R++       ++V   LS       +Q
Sbjct: 187 LGAHQCLAIKER--------------DHPSGVWRLTERGETVSVKVTGPLSTNHGEVAVQ 232

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + G GI L   + V+   D+  LV+++  V  P+  V+  YP  L ++ K++   +F+
Sbjct: 233 WALAGRGIVLRSIWDVRGLLDSGALVQVLPGVTQPA-NVWAVYPARLASSAKVRVCVDFL 291


>gi|294139722|ref|YP_003555700.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293326191|dbj|BAJ00922.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 292

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 140/289 (48%), Gaps = 15/289 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +W  +  F     + SFT AA++L+ S + ISR++  LE E+  +LFYR  R LTLT
Sbjct: 1   MISNWVGVTEFICSVENQSFTKAAKRLNTSTAQISRKVKHLEAELSTQLFYRSTRLLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   ++ + +   +L   Q  L +      G +RI      G  ++   + +FLL Y 
Sbjct: 61  EEGKIYYQYSKKANTELLNAQSMLSQYQSSAEGSIRITAPTTYGDQIIAPIVNDFLLKYE 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I LIL N+ +++  D  D A+RL   ++ SSLI +KL T       +P Y      P
Sbjct: 121 QIKIDLILTNQRVNLIEDGIDLAVRLGN-LEDSSLICKKLGTRKKSVCVSPEYANKYGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++EL   N I         + D+ W     +     R+ C   N+ +++++  V   G
Sbjct: 180 KDLEELKNFNCIN-------GLTDY-WSFKTGKVKVSGRLRC---NNSMAVLKAGVQHLG 228

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  LPDY +K+   N +L++I+ +       V+  YP   + +  +K F
Sbjct: 229 LIQLPDYHLKEHLKNNSLIQILTEYEAEKEGVWALYPNTRQPSYNVKLF 277


>gi|332875192|ref|ZP_08443025.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|193077849|gb|ABO12726.2| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           17978]
 gi|332736636|gb|EGJ67630.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 337

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 1   MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YPDI + + 
Sbjct: 61  DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP SI++L 
Sbjct: 121 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 179

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           K H  I F     +   +F+W   VD  I    +   + VN   + +   + G GI   P
Sbjct: 180 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 237

Query: 246 DYIVKDN 252
            Y++ ++
Sbjct: 238 RYMLTNH 244


>gi|298682287|gb|ADI95349.1| LysR family transcriptional regulator [Pseudomonas putida]
          Length = 301

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 143/290 (49%), Gaps = 9/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A + SFT A  +L +S S+I + ++ LE  +G++LF+R  R +TLT +G+   
Sbjct: 11  LGAFVHAAEARSFTEAGRRLEVSSSAIGKAVARLEERLGVRLFHRSTRAITLTPEGALFL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                ++ +LE  + EL +++ KP GKLR++    LG  L+  +L  F   YP +++++ 
Sbjct: 71  ERCHRIFAELEVAERELHQAAAKPQGKLRLSLP-QLGMRLMP-HLIAFQQTYPAVELEMD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D  +R+ + ++ S L+ R+L        A P YL+    P    +L 
Sbjct: 129 FSDRLVNVIEEGFDAVMRIGE-VEDSRLMMRRLQGFSHRIVATPEYLEQRGTPKHPYDLA 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +    P   +   W  T D +P+          N+   +M     G GIA LPD
Sbjct: 188 SHACLHY--RYPSSGKLDAWPLTEDGKPVHLDLPQSAVANAIDPLMAMAEAGQGIACLPD 245

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +I+ D      L+ ++E  ++   +    +P + +   K+KAF +F+  +
Sbjct: 246 FILVDALAGGRLISLLEAYVSDRRSFTILWPSSRQPLPKIKAFVDFMVAR 295


>gi|237807329|ref|YP_002891769.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237499590|gb|ACQ92183.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 297

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 130/273 (47%), Gaps = 9/273 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  +A  GSFT  AEQ+ L++S ++RQI+ LE  +G+KL  R+ R L+LT  GS 
Sbjct: 5   DAMHLFVRIAELGSFTAVAEQMDLARSVVTRQIAALEEHLGVKLMVRNTRRLSLTSAGSA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +E  +  + E  + P G +RI   +  G   L   L +F  LYPDI ++
Sbjct: 65  YLEKCRVILDLVEAAEASVMEERLTPRGNIRIGLPLSFGLKTLSPLLLKFSGLYPDIDLE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D+  +++  +  D AIR+   +    ++ RKL T  + A A+P YLK   +P    E
Sbjct: 125 MDFDDHQMNLIEEGMDIAIRIAGQLAPGDIV-RKLGTCKLLAVASPDYLKQHGKPQHPSE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  H  + +           +W   VD       I   ++ N+  ++ +    G G+ L 
Sbjct: 184 LINHACLGY----TLTAGGSSWTFMVDGRHETFYIKTHIKANNGDALTEAAANGLGLTLQ 239

Query: 245 PDYIVKD--NPNLVRIMEDVITPS-FTVYFCYP 274
           PD+IV D      V  + D  TP+   +Y   P
Sbjct: 240 PDFIVNDYLQSGRVETILDEFTPAELGIYAILP 272


>gi|107101762|ref|ZP_01365680.1| hypothetical protein PaerPA_01002806 [Pseudomonas aeruginosa PACS2]
          Length = 297

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 144/287 (50%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR+  ++ L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPTLADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPAYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
             + +    P       W   + R  GE  P+I    V N+  + + + +   GIA LPD
Sbjct: 186 TCLHY--RFPNTGRLEEW--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++      LV +++         +  +P   + + KL+AF +F+
Sbjct: 242 FSIREALREGRLVSVLDAFCERRARFFLLWPSGRQVSPKLRAFIDFV 288


>gi|307726353|ref|YP_003909566.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586878|gb|ADN60275.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 307

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 148/301 (49%), Gaps = 11/301 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LRVF  VAR  SF+ AAE L +S + +S++I+ LET +G +L +R  R + +TE
Sbjct: 6   SPDLGDLRVFCEVARKASFSAAAESLQVSAAYVSKRINVLETTLGTRLLHRSTRRVAITE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +++    ++   ++    ++  +   P GKLRI+++   G+  +   L  F   YP 
Sbjct: 66  AGERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ +D++ +  D  IR+   I +  LI R+L + H    A+P YL     P 
Sbjct: 126 LSVRLDLFDRLVDVAGEGFDLDIRIGDEI-APHLIARRLASNHRVLCASPDYLARHGAPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + EL  H  +     I +    F  W  TV       +++  L  N     +Q+ + G 
Sbjct: 185 QLAELSSHACLA----IKERDHPFGLWRLTVRGETASIKVTGPLSTNHGEVAVQWALAGR 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI L   + V+   ++  L +++ +V  P+  ++  YP  L  + K++   +F+  +   
Sbjct: 241 GIVLRSMWDVRPLLESGQLQQVLPEVTQPA-NLWAVYPARLAQSAKVRVCVDFLSEEFAQ 299

Query: 297 W 297
           W
Sbjct: 300 W 300


>gi|213158702|ref|YP_002320000.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215482844|ref|YP_002325047.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|213057862|gb|ACJ42764.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213989057|gb|ACJ59356.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
          Length = 343

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 7   MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YPDI + + 
Sbjct: 67  DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP SI++L 
Sbjct: 127 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 185

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           K H  I F     +   +F+W   VD  I    +   + VN   + +   + G GI   P
Sbjct: 186 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 243

Query: 246 DYIVKDN 252
            Y++ ++
Sbjct: 244 RYMLTNH 250


>gi|330821525|ref|YP_004350387.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327373520|gb|AEA64875.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 325

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 145/293 (49%), Gaps = 13/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  +GSF  AAE+L +SQ  +SR I+ LET + I+LF R  R ++LT++G +
Sbjct: 10  NGMSIFVAVVEAGSFAAAAERLDMSQPGVSRAIARLETRLEIRLFDRSTRAVSLTDEGRR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            HR  + +   LE        S+    G+LR+       + +L   L+ FL  +P+++++
Sbjct: 70  FHRQITPLLSGLEEAAATASGSATVVRGRLRVNIDPFFSRLMLGPRLEAFLNQHPELRLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+  ++  D+  D  D A+R   P + S++  RKL+   +   A+P YL     PL  QE
Sbjct: 130 LVTRDQLGDLVADGFDLAVRFGVP-RESAMRARKLLDTRILTVASPDYLARHGRPLKPQE 188

Query: 186 L--DKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L   +H  I F D  P+    F W      +R + E + + L VN   +++  C  G G+
Sbjct: 189 LGDGRHVCIDFRD--PESGRPFPWEFHRKRERIVVETQ-ARLVVNDVGTMLSACAAGYGV 245

Query: 242 ----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               AL  + ++ +   LV +  D     F ++  Y  A     K +AF +F+
Sbjct: 246 AQVMALGSEALLAEG-RLVELFPDWPDERFPLHALYLSANHPPAKTRAFLDFV 297


>gi|169795311|ref|YP_001713104.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|169148238|emb|CAM86101.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
          Length = 345

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 9   MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YPDI + + 
Sbjct: 69  DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP SI++L 
Sbjct: 129 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 187

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           K H  I F     +   +F+W   VD  I    +   + VN   + +   + G GI   P
Sbjct: 188 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 245

Query: 246 DYIVKDN 252
            Y++ ++
Sbjct: 246 RYMLTNH 252


>gi|76810135|ref|YP_332367.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|76579588|gb|ABA49063.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
          Length = 428

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 111 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 170

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 171 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 230

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 231 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 289

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 290 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 347

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 348 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 394


>gi|330809375|ref|YP_004353837.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377483|gb|AEA68833.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 297

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 130/274 (47%), Gaps = 6/274 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D+L +F  VA+  SFT AA +L +SQ ++SR +  LE  +G++L  R  R +  TE G 
Sbjct: 6   YDQLAIFAAVAQERSFTRAAAKLGMSQPALSRAMRQLEERLGVRLLSRTTRSVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L RV +  + +++     L E   KP+GKLRI         +LQ  L   L  +PD+ I
Sbjct: 66  HLLRVVAPRFEEIDNEMAMLSEFRDKPAGKLRITAGEHSAITILQSVLARLLPDHPDLNI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I+D    DI  +  D  +RL   +    +  R    + M    +P Y     +P+  +
Sbjct: 126 EIIVDYGFTDIVAEGFDAGVRLGPQVAKDMIALRIGPDMRMAVVGSPAYFGRYPKPVIPE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN I     +P     + W    +    + R+   L  N+    ++  + G G+A 
Sbjct: 186 DLTAHNCINL--RMPTHGGLYIWEFEKNGQELKVRVEGQLVFNTIAMRLEAALQGLGLAF 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           +P+ +V+D      L+R++ED   P    +  YP
Sbjct: 244 MPEDLVQDAVAQGRLIRVLEDWCEPFSGYHLYYP 277


>gi|49085530|gb|AAT51285.1| PA2316 [synthetic construct]
          Length = 298

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 144/287 (50%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR+  ++ L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPTLADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPAYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
             + +    P       W   + R  GE  P+I    V N+  + + + +   GIA LPD
Sbjct: 186 TCLHY--RFPSTGRLEEW--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++      LV +++         +  +P   + + KL+AF +F+
Sbjct: 242 FSIREALREGRLVSVLDAFCERRAQFFLLWPSGRQVSPKLRAFIDFV 288


>gi|325168325|ref|YP_004280115.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064048|gb|ADY67737.1| transcriptional regulator, LysR family protein [Agrobacterium sp.
           H13-3]
          Length = 306

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 136/279 (48%), Gaps = 12/279 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +   LR+   +  +GS + AA++L  S  ++SR+++  E  +G++L  RHAR   LT
Sbjct: 1   MADEISDLRLLVALVSAGSLSAAAQRLDSSLPAVSRRLAAFEQRLGVRLIERHARRFNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+ LH     +   ++  + E       P G++RI++ + +G+  +   + EF   YP
Sbjct: 61  DEGAALHERAFSILADIDEAEAEASAGKGTPRGRVRISSPVHVGRTQIAPLVAEFRDRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI I+L+L +  +D++ D  D  + +  P  + S++ RKLV+      AAP YL+    P
Sbjct: 121 DITIELMLSDAVVDVAEDDIDIVLHVGVP-TAQSVVTRKLVSGRRIVLAAPAYLERFGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
               +L KH  I    L+ +    FN WL      + E  +S  L   S   + ++ + G
Sbjct: 180 AHPDDLLKHECI----LLMRGRRVFNRWLFKEANGVREVHVSGGLLSTSSEVVYEWILEG 235

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEAL 277
            GI +   + V+D+     +    +T     Y C P  L
Sbjct: 236 RGIGIKGSWDVEDD-----LASGRLTECLAPYACDPADL 269


>gi|239502918|ref|ZP_04662228.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB900]
          Length = 337

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 1   MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YPDI + + 
Sbjct: 61  DRTARILADVADIESSFHDTERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP SI++L 
Sbjct: 121 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 179

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           K H  I F     +   +F+W   VD  I    +   + VN   + +   + G GI   P
Sbjct: 180 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 237

Query: 246 DYIVKDN 252
            Y++ ++
Sbjct: 238 RYMLTNH 244


>gi|238761853|ref|ZP_04622827.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638]
 gi|238699967|gb|EEP92710.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638]
          Length = 304

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 148/296 (50%), Gaps = 13/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF +  + +F  V  +GSF+ AA +L++++S++S++IS  E E+G++L +R  R L+LT+
Sbjct: 3   SFSY--IPIFIAVVDAGSFSGAAIKLNITKSAVSKRISQFEEELGVRLLHRTTRRLSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K +          +  +  + +   KP G LR++  +  G+  +   +  FL   P 
Sbjct: 61  AGLKYYDYARSALQLAKEGEDAITQMQDKPQGILRLSAPMAFGRLHISPLIPPFLSQNPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I +++D++ +++     D  IR+ + +  S++I R L        A+P YL+    P 
Sbjct: 121 VEINMVMDDRVVNLVEGGFDMGIRIGQ-LADSTMIARPLAPCTSVLCASPEYLRRHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGS 239
           S  +L +HN + +   +      FN    V R  P G       QVN+  ++    + G 
Sbjct: 180 SPHDLSQHNCLFYSYFLGGTEWIFNSHEGVSRFLPKGN-----YQVNNSEALYDALLAGL 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  +P +IV     +  LV ++ +   P  ++Y  YP+ L    K++ F +++ +
Sbjct: 235 GICQMPKFIVGPALADGRLVSLLPNYRLPKHSIYAIYPQRLHVPAKMRTFLDYLLV 290


>gi|206560399|ref|YP_002231163.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198036440|emb|CAR52336.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 321

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 140/297 (47%), Gaps = 19/297 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AA+ LH+S++++++ +  LE  + +KLF R  R + +T  G+
Sbjct: 4   FDAMQAFARVVEAGSFTKAADTLHMSRTTVTQLVQQLEARLRVKLFNRTTRKVVVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  +S  P G+LR+       + +L   L  F   +PDIQ+
Sbjct: 64  AYYERVVRLLADMDDAETSLSAASASPRGRLRVDVPSPFARLILIPALPAFHARHPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R  +P    SL+ R +  + +  YA+P YL     P    
Sbjct: 124 DMGVSDRVVDVIGENVDCVVRGGEPTD-RSLVARHIGDLRLGVYASPAYLARAGTPSHPA 182

Query: 185 ELDK--HNLITF-----GDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           ELD   H ++ F     G  +P  M  D   +    R +    ++    N+YL+     +
Sbjct: 183 ELDDAHHRVVGFLWARTGKTLPFAMACDGEQVHVRGRYV----LAVDDGNAYLAA---GL 235

Query: 237 LGSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  LPDY+    + N  LV +          +Y  +P     + KL+ F +++
Sbjct: 236 AGLGILWLPDYMAAAYRANGELVPLFAQWQLEPMPMYVAFPPNRHVSAKLRVFVDWV 292


>gi|107100779|ref|ZP_01364697.1| hypothetical protein PaerPA_01001807 [Pseudomonas aeruginosa PACS2]
 gi|218892567|ref|YP_002441436.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218772795|emb|CAW28580.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 302

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126
             T + Y  L   +  L ES  +PSG+LRI + + L +NL +   L EF+  YP +Q+++
Sbjct: 70  EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +L
Sbjct: 129 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPTYLAEYGTPASVADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGSGI--AL 243
           D H  + F    P+      W    D    E  +    V++   +I++    G+GI  A 
Sbjct: 189 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTEAIIEAARAGAGIAQAF 246

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299


>gi|310821369|ref|YP_003953727.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394441|gb|ADO71900.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 309

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 18/281 (6%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V  +G  T AAE+L L +S++SR+++ LE  +G +L  R+ R L LTE G + H   + +
Sbjct: 17  VVATGGITAAAERLGLRKSTVSRRLASLEARLGARLLERNTRRLRLTEAGREYHAHCARL 76

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
             +       L ES   P G LRIAT   LG+ LL   + EFLL  P +++++ L    +
Sbjct: 77  VAEAREVNKALIESRGTPQGTLRIATLSLLGE-LLTPLIAEFLLRQPRMRVEVSLAPAHV 135

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+  +  D A+R   P+  SSL+ R+L  +H   YA+P YL++   P   ++L  H+ + 
Sbjct: 136 DLIAEEYDLALRT-GPLVDSSLVMRRLGRLHTGCYASPAYLRHRGTPRVPEDLQGHDCV- 193

Query: 194 FGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
              L+ +   D  W      +    P+ E RI    V +  S  +    G G+  LP  +
Sbjct: 194 ---LLAEPGTDEVWFFGEGPSARTLPV-EGRIRVPSVRAGQSAARA---GLGVVRLPSSL 246

Query: 249 VKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           V D+     LV ++E    P   +   YP   +   K++AF
Sbjct: 247 VADDVRAGLLVPLLEAETPPGIPILAVYPSRPQLALKVRAF 287


>gi|209521529|ref|ZP_03270231.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209498029|gb|EDZ98182.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 306

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE G+
Sbjct: 4   FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   +  L      P+G +R+ T+  L ++LL   L +F   YP I +
Sbjct: 64  AFYERCVRILADVVDAESSLSNKRENPAGTIRVDTSGTLARSLLLPALDDFYAQYPAIDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +++ID+  D  DC IR+   ++ SSL+ +++    +   AAP YLK    P ++ 
Sbjct: 124 RLGLADRNIDLIQDAVDCVIRM-GTLEESSLVAKRIGLARIVTCAAPAYLKKYGTPATLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  + +  +  +    F +   VD  I    +   L VN     +   VLG GI  
Sbjct: 183 DLTNHRAVNY--VSARTGRTFPFEYEVDGEIERVAMKGTLAVNDGSVYITAGVLGHGIIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              ++V    +   L  I+ +  +P   +   Y      + +L+AF ++    AR+
Sbjct: 241 PSRFMVAELIERGALTEILGNYTSPGTPLSILYAHRRNLSSRLRAFIDWFSELARN 296


>gi|300717415|ref|YP_003742218.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299063251|emb|CAX60371.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 304

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 137/281 (48%), Gaps = 8/281 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F    ++GS+THAA  L L++S+I + I  LET +G++L  R  R L+LT++G  ++  
Sbjct: 11  AFVAAVKAGSYTHAAGSLGLTRSAIGKSIVRLETRMGVRLLNRTTRSLSLTDEGRVMYDR 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   LE     +     KPSG LR++  +  GQ  +   L  +L  +P+++ ++   
Sbjct: 71  CRQILDDLEEVDAAMAMRRGKPSGTLRLSAPLSFGQRHILPVLDAYLKKWPELRAEVSFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIR+ +P   S ++ R + +  +   A+P YL     P +  EL  H
Sbjct: 131 DRFVDLIEEGFDIAIRIGEPRDDSRILTRTIASQRIVTCASPQYLSLRGAPKTPAELTGH 190

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           + I     +    +  +W  AT +          L ++S  ++    + G GI  LP Y+
Sbjct: 191 DTI----FLLSAEKRRSWHFATPEGTFVYEGPGRLNLDSSEAMRASAISGFGIVHLPTYL 246

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + D+     LV ++E+   P   V   YP     + +++AF
Sbjct: 247 LADDVRSGKLVPVLEEYPFPPEPVRIIYPSKRHLSPRIRAF 287


>gi|85710262|ref|ZP_01041327.1| transcriptional regulator (LysR family protein) [Erythrobacter sp.
           NAP1]
 gi|85688972|gb|EAQ28976.1| transcriptional regulator (LysR family protein) [Erythrobacter sp.
           NAP1]
          Length = 300

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 144/292 (49%), Gaps = 11/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  V  SGSFT AAE+L ++ SS+SR I+ LE E+G +LF R  R +  TE G +
Sbjct: 4   ENLRTFLAVWYSGSFTAAAEELAVAPSSVSRAIAALEGELGARLFQRTTRAMRPTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    S +  + +  +  L     + +G+LRI+++I   Q ++   LK F   +PD+ I 
Sbjct: 64  LFPRASGLVEEWDAARQALAGEQAQLAGRLRISSSIAFSQIVIAPMLKRFKADHPDLTID 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +++  +  D AIR  + ++ SSLI RKL  +  H  A+P   +   +    +E
Sbjct: 124 LHLSDDRVNLVEEQIDIAIRHGR-MEDSSLIARKLGAVRYHLVASPRLSEQIGKIEDPEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L + +L+TF     +   +F       R    P I+     + L I +  +   G ALL 
Sbjct: 183 LRQVSLVTFSFGEFRRQWEFRRGQDTRRVQISPTITA---TNALVIREAVLNDCGAALLA 239

Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFT---VYFCYPEALKNTGKLKAFRNFI 290
           D++++D      LV I+ D  ++ +     ++  YP       K + F  F+
Sbjct: 240 DWMIEDELERGELVPILPDWNVSGALAQSDLWLVYPSRSFIPAKTRIFAEFL 291


>gi|169633159|ref|YP_001706895.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|260554423|ref|ZP_05826644.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           19606]
 gi|169151951|emb|CAP00809.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii]
 gi|260410965|gb|EEX04262.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           19606]
          Length = 345

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 9   MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YPDI + + 
Sbjct: 69  DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP SI++L 
Sbjct: 129 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 187

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           K H  I F     +   +F+W   VD  I    +   + VN   + +   + G GI   P
Sbjct: 188 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 245

Query: 246 DYIVKDN 252
            Y++ ++
Sbjct: 246 RYMLTNH 252


>gi|167917720|ref|ZP_02504811.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           BCC215]
          Length = 324

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 67  EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290


>gi|116049280|ref|YP_791917.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584501|gb|ABJ10516.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 302

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 13/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126
             T + Y  L   +  L ES  +PSG+LRI + + L +NL +   L EF+  YP +Q+++
Sbjct: 70  EQTEQPYRDLVRAREALGESLAEPSGQLRI-SALHLAKNLVIAPMLNEFVRRYPKVQLEI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +L
Sbjct: 129 RYEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEHGTPASVADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGSGI--AL 243
           D H  + F    P+      W    D    E  +    V++   +I++    G+GI  A 
Sbjct: 189 DGHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTETIIEAARAGAGIAQAF 246

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299


>gi|167822901|ref|ZP_02454372.1| LysR family transcriptional regulator [Burkholderia pseudomallei 9]
          Length = 409

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 98  MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 157

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 158 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 217

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 218 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 276

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 277 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 334

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 335 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 381


>gi|154245318|ref|YP_001416276.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159403|gb|ABS66619.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 308

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 140/283 (49%), Gaps = 10/283 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R+   +A+S S   AAEQL ++ S++ R++  LE ++G +LF R   G   T  G 
Sbjct: 4   WDDFRLVQAIAQSSSLAGAAEQLGVNHSTVFRRLGALEEQLGARLFERARSGYVPTAIGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++ R+   +  ++ + +  +    ++PSG+LR+ T   L  ++L      FL  YP+I++
Sbjct: 64  EMVRLAERMADEVLSVERRITGQDLRPSGELRVTTNDTLLVHMLTPVFASFLKAYPEIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +++ N+ + +S   AD AIR   +P    +L+ R++ +I    YA          PL  
Sbjct: 124 DVVISNQSLSLSKRDADVAIRASDRP--GDTLVGRRMASIAWAIYARADLAPAT--PLGA 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +  +++ I F D +   ++   WL      + E R+   +VN+ L + +    G G+A+
Sbjct: 180 GDFRRYDWIGFSDNL-GGIKPAKWL---RERVDEDRL-VYRVNTVLGLAEAAAEGIGLAV 234

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP +I    P LV+I+         ++      +K T +++ F
Sbjct: 235 LPCFIAAVTPGLVQIVPPQPEMESGLWLLTHPDIKATARVRTF 277


>gi|134291266|ref|YP_001115035.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134455|gb|ABO58780.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 313

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + V   +  +GSF  A E L +SQS +SR I+ LE  +G++L  R  R +TLT++G +
Sbjct: 10  NGMGVLAAIVDTGSFAGAGEILDMSQSGVSRAIARLEGRLGVRLLERTTRSVTLTDEGRR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   LE       + +    G+LR+       + +L   L  F+  YP+++++
Sbjct: 70  FYEQVMPLLGALEEATTHATQGATAVRGRLRVNVDPFFSRFVLGPQLGSFIEEYPELRVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ- 184
           L+  ++  D+  D  + A+R   P Q S+L+ RKL+   +   AAP YLK    PL    
Sbjct: 130 LVTRDQLGDMIADGFELAVRFGHP-QPSTLVARKLLETRILTVAAPSYLKRHGRPLQPAG 188

Query: 185 -ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            E D H  I + D  P     F+W     R      ++  L VN   ++   C+ G  IA
Sbjct: 189 LERDTHACIRYRD--PATGHPFDWEFHRGRKKLVVDVAGRLTVNDVGTMHSVCLAGHAIA 246

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + +  V+    +  LV +  D     F +Y  YP       K++AF +FI
Sbjct: 247 QVMELGVEAPLADGRLVDLFPDWPDDRFPLYALYPSRRYVPAKVRAFLDFI 297


>gi|288957959|ref|YP_003448300.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288910267|dbj|BAI71756.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 307

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 3/198 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSFT AA++L L ++++SR++  LE  +GI+L +R  R + LTE G+     
Sbjct: 11  AFVKVVEEGSFTKAAQRLRLPKTTLSRKVRDLERRLGIRLLHRTTRRIGLTEAGTVYFEH 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LE  +  + +    P G LRI T    G  ++   L EF   YPD++I L+L 
Sbjct: 71  CRRIAGELEQAESAVAQLRDSPRGWLRITTPPSFGMKVIAPLLPEFRARYPDVRIDLVLS 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++++D+     D AIR+   +Q S++  RKL  +  H YAAP Y      P    EL +H
Sbjct: 131 HENLDLVAREIDLAIRM-GALQDSTMAARKLGVLRRHVYAAPSYCSTYGMPGHPDELVRH 189

Query: 190 NLITFGDLIPKCMEDFNW 207
             +T  ++  +    F W
Sbjct: 190 --LTLANMTARRPSGFGW 205


>gi|15887559|ref|NP_353240.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15155094|gb|AAK86025.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 293

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 137/289 (47%), Gaps = 9/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    A+++L L+ +++SR+++ LE  +  +LF R   G  +TE+
Sbjct: 1   MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++   Q  L       +G +RI     LG + L   L      YPD+
Sbjct: 61  GQRFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI + +P Q   L+  KL    +  YA+  YL +   P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITIERPEQ-GRLMFSKLTDYSLGLYASADYLADHGTPDD 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ L +H  I +  DLI       N+   + R       +  +++S     +    G+GI
Sbjct: 180 VEALKRHRRIGYVEDLI--FSPSLNYTGEIMRDWD----AAFEISSATGQTEAVRSGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +L +YI    P L+RIM   +  S + +  Y E+ +   +++   +F+
Sbjct: 234 GILHNYIAGQYPELMRIMPH-LGISRSYWTAYHESARQLVRVRTVVDFL 281


>gi|323975925|gb|EGB71020.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
          Length = 304

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+  Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASTDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETLDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++     +  LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIAHGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|239816813|ref|YP_002945723.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239803390|gb|ACS20457.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 348

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 145/288 (50%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  VA   SF+ AA  L +S++++SR ++ LET  G++L  R  R L+LT+ G  
Sbjct: 5   DLIKTFREVAFRRSFSRAAISLGMSKATVSRYVAELETRSGVRLLNRSTRSLSLTDAGQV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   ++E+    E T  +LQ     P G+LR++    L    L   + EF+ LYPD+ + 
Sbjct: 65  LLDRSTELVAMAENTLNDLQAHGSHPQGRLRMSAPHGLIAGWLSDVIAEFIQLYPDVYVS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+  N D+D+  +  D  +   + I   +LI R+LV   M   A+P Y      P   ++
Sbjct: 125 LVFTNDDLDLIEEGIDIHLTGGR-IDDMNLIVRRLVPFDMVVCASPAYWARRGIPAVPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+++++    P     F    T  + +  P  S ++ N  +++++  + G+G+A +P
Sbjct: 184 LGRHDVLSY-SAKPTTHLPFE---TGGKAVEVPVHSRMEANDAVALIELALRGAGVAYVP 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + +   +   LV ++ + +     +Y  Y +   N+  ++   +F+
Sbjct: 240 EPLAQSHLERGALVPVLREHMPSDHWLYAAYSQRRHNSAAMRTMLDFL 287


>gi|226946031|ref|YP_002801104.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226720958|gb|ACO80129.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
          Length = 303

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 142/291 (48%), Gaps = 14/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LR+F  V  SGS + AA   H++  + SR++  LE  +G++L  R  R  +LTE+G
Sbjct: 5   DISLLRLFVAVVESGSLSSAARAQHITLPAASRKLRQLEESLGVRLLQRTTRRQSLTEEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+R   +V   LE  + +L   S   SG+LR+ T I LG+  +   L EF  L+P++Q
Sbjct: 65  ELLYRRAVQVLADLEQVEQQLLRKSAVVSGQLRVTTPISLGRRRIAPLLAEFCALHPELQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R    ++ SS I R L   H    A+P Y++   EP S 
Sbjct: 125 VQIELSDSVLDLVASGMDFAVRF-GGLEDSSYISRPLAPNHRVLCASPEYIRRHGEPRSP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLGSGIA 242
            +L  H+ +  G    +   D+ +           RIS   V S   ++ Q+ + G GIA
Sbjct: 184 ADLAHHHCLLIGQ---QSQADWRFEEVT------VRISARLVASDGEVVHQWALDGHGIA 234

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   + V D+     L +++     P+  ++  YP       +++A  +++
Sbjct: 235 LKSIWDVADDLRSGRLRQVLAGHRIPAAPLHAIYPHKHHVAPRVRACIDYL 285


>gi|237810985|ref|YP_002895436.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|237504241|gb|ACQ96559.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 421

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 104 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 163

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 164 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 223

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 224 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 282

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 283 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 340

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 341 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 387


>gi|217419705|ref|ZP_03451211.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217397009|gb|EEC37025.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 433

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 116 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 175

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 176 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 235

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 236 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 294

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 295 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 352

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 353 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 399


>gi|319787271|ref|YP_004146746.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465783|gb|ADV27515.1| transcriptional regulator, LysR family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 340

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 131/294 (44%), Gaps = 5/294 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M++D +   VF  V   GSF  AA  L L ++++SR++  LET +G +L +R  R L LT
Sbjct: 1   MAYDLNDTLVFVKVVEQGSFIAAARSLGLPKTTVSRKVQELETRLGAQLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +  +LE  +  + +    P G LR      +G   +   L EF   YP
Sbjct: 61  EAGNVYFEHCQRIAQELEEAEGAVGQLQGGPRGWLRFTVPYSIGIAWISPLLGEFHARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + N  +D+     D A+R   P+  S+LI R+L       +A+P YL    EP
Sbjct: 121 EIRLDMHMSNDQVDLIGSEIDVALR-GGPLPDSTLIARRLAGFRTQVFASPDYLSRHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239
           L   EL  H ++              W  +      E  I+ L V +  S +   VL G 
Sbjct: 180 LHPDELQHHRILAVRKHYHSHPTRITWPLSDGTDTTEFPINPLMVANDPSALIGAVLCGE 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ L  D   K   ++  L R++     P       +P     + K++AF +F+
Sbjct: 240 GLTLATDVTAKPYVESGALRRVLAGWTGPEVDFNAVFPRGRVMSPKVRAFVDFL 293


>gi|242314165|ref|ZP_04813181.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|242137404|gb|EES23806.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 417

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 100 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 159

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 160 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 219

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 220 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 278

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 279 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 336

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 337 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 383


>gi|126455277|ref|YP_001065075.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|126228919|gb|ABN92459.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
          Length = 415

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 98  MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 157

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 158 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 217

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 218 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 276

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 277 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 334

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 335 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 381


>gi|152978820|ref|YP_001344449.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150840543|gb|ABR74514.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 290

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 143/286 (50%), Gaps = 14/286 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V ++GS   A+E   +  S +SR+++ LE  +G KL  R  +G+TL + G  
Sbjct: 7   DDMRLFVSVVQAGSLHLASELTGVPISRLSRRMTQLERALGSKLMDRGKKGVTLNDLGLP 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    +    E     +Q+S  KP+G LRI+   D+ + L+   L  +L   PD+ I 
Sbjct: 67  FFQRAQHMLQLAEQAVSGVQDSLTKPNGLLRISVAGDIMRMLIAPYLPAYLAENPDVNID 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQ 184
           +    + I++  D  D AIR+   I++ +++ RK + I    Y+AP YL+   EPL S Q
Sbjct: 127 IHQSPQKINMIQDGIDIAIRVGS-IENENVVARKFLDIRFGVYSAPEYLEG-HEPLHSPQ 184

Query: 185 ELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++ +H  +     +P + ++    L  +  P G+     L VN YL    +   G+GI +
Sbjct: 185 DIYRHAGVVHALSLPWRFIQGHQRLDIM--PAGK-----LTVNDYLLAAHFIRQGAGIGM 237

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LP ++    P L++++ D   P+  +   Y    KN G +   R+F
Sbjct: 238 LPTFVGDQTPELIKLLPDWEMPTVPLSVIY---YKNRGTVPTIRSF 280


>gi|296115610|ref|ZP_06834237.1| regulatory protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295977859|gb|EFG84610.1| regulatory protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 297

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 137/275 (49%), Gaps = 12/275 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  VAR  SFT AA ++ +SQS++S  I  LE+ +GI+L  R  R ++ TE G +
Sbjct: 7   NDLQVFLSVARERSFTRAAAKIGISQSALSHTIRHLESRLGIRLLTRTTRAVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  +++     L E   KP+G +R++ +    +++L   L+  L  YPDI+++
Sbjct: 67  LLNRVGPLLDEVDAHIDALSELRDKPAGTIRLSASDHAIKHILWPKLRTILHQYPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ DN   DI  +  D  +R+   +    +  R    I      AP YLKN   PL  ++
Sbjct: 127 LVQDNGLTDIVTERLDAGVRMGDQLAKDMISARISPDIRFAVVGAPSYLKNNPAPLHPRD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L  H  I   + +P     + W     D P  + R+   L  N+  +I++  + G G+A 
Sbjct: 187 LVSHTCIN--NRLPTLGGFWPWEFQEKDGPEIKIRVDGQLAFNNIFNIIEAALDGFGLAY 244

Query: 244 LPD-----YIVKDNPNLVRIMEDVITPSFTVYFCY 273
           LP+     YI +    LVR++E   +P +  Y+ Y
Sbjct: 245 LPEDLALPYISQG--RLVRVLEK-WSPYWDGYYIY 276


>gi|170692588|ref|ZP_02883750.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142244|gb|EDT10410.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 307

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 148/302 (49%), Gaps = 11/302 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LRVF  VAR  SF+ AAE L +S + +S++I+ LET +G +L +R  R + +TE
Sbjct: 6   SPDLGDLRVFCEVARKASFSAAAESLSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +++    ++   ++    ++  +   P GKLRI+++   G+  +   L  F   YP 
Sbjct: 66  AGERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ +D++ +  D  IR+   I +  LI R+L + H    A+P YL     P 
Sbjct: 126 LSVRLDLFDRLVDVAGEGFDLDIRIGDDI-APHLIARRLASNHRVLCASPDYLAREGAPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + +L  H  +     I +    F  W  TV       +++  L  N     +Q+ + G 
Sbjct: 185 QLADLSAHACLA----IKERDHPFGLWRLTVRGEAASIKVTGPLSTNHGEVAVQWALAGR 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI L   + V+   ++  L +++ DV  P+  ++  YP  L  + K++   +F+  +   
Sbjct: 241 GIVLRSMWDVRPLLESGQLQQVLPDVTQPA-NLWAVYPARLAQSAKVRVCVDFLSEEFAQ 299

Query: 297 WK 298
           W 
Sbjct: 300 WN 301


>gi|163797016|ref|ZP_02190972.1| regulatory protein, LysR:LysR, substrate-binding [alpha
           proteobacterium BAL199]
 gi|159177763|gb|EDP62314.1| regulatory protein, LysR:LysR, substrate-binding [alpha
           proteobacterium BAL199]
          Length = 301

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR F  VA  GS + AA  LH++ +++SR +  LE    ++LF R   G  LT  
Sbjct: 1   MNWDDLRYFLAVAGEGSLSGAARSLHVNPATVSRHVDALEERFAVRLFDRRQDGYGLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL   +  +  ++              +G + +  T  L    L  NL      +P I
Sbjct: 61  GEKLLARSRGIESEMFALGRAFDAEDRGLAGTVTVTATESLTVPFLIRNLPLLEQRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+ + + +++S   AD AIRL +P Q    I RK+  +    YA+P YL+    P +
Sbjct: 121 RLHLVNEYRMLNLSRREADVAIRLARPEQGDLSI-RKIGVMGFGLYASPAYLEAHGTPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H +I + D  P+ +    WL    R IG+  +     N   + +     G GIA
Sbjct: 180 PGDLRDHRVIDWLDGFPENVT-VTWL---RRQIGDT-LPIFSTNPASARLAAARGGVGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+P  + +    +VR++ D   P   ++      L    K++A  +FI+ +A
Sbjct: 235 LVPCMVAEGVQGVVRLLPDEAIPGVDLWLLVHRDLARLAKVRAVLDFIYDRA 286


>gi|120597618|ref|YP_962192.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146294243|ref|YP_001184667.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120557711|gb|ABM23638.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
 gi|145565933|gb|ABP76868.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
 gi|319427590|gb|ADV55664.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 303

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 148/300 (49%), Gaps = 22/300 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIENTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPSYLKLRGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISC------LQVNSYLSIMQYCV 236
           QEL +H+ I  G      +    W      P+G+ PR +       ++VNS + + Q  +
Sbjct: 182 QELSQHSGILLGTSRSAPI----W------PLGKGPRKTMVNFQRKVRVNSPIMVKQLAM 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              GIA+L +   K    N  LV I+++     F VY  Y    +    +  F +F F+K
Sbjct: 232 DDFGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISVFLDF-FVK 290


>gi|161523887|ref|YP_001578899.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351352|ref|YP_001946980.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221211395|ref|ZP_03584374.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160341316|gb|ABX14402.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335374|dbj|BAG44444.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221168756|gb|EEE01224.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 294

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 139/286 (48%), Gaps = 11/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGISASAVGKRIARLEARLNVRLFHRSTRSVTLTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              V  +++  + EL +S   P G+LR++  TI     L+   L  F+  YP+I++ L  
Sbjct: 69  CRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIG---TLMLPVLAGFMTAYPEIELDLDF 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  +  D  +R  +P   S L  R L     H  A+P YL+    P +  +L +
Sbjct: 126 SDRLVDVVDEGFDAVVRTGRP-ADSRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLVR 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  + +    P   +   W     R    P +    V N+  + + + + G GIA LP++
Sbjct: 185 HRCLHY--RFPATGKLEIWPLRASRSHTPPDVPVSMVSNNAETRLCFALRGLGIACLPEF 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+   D   L  +++D +     VY  +P     T KL+AF +++
Sbjct: 243 FVREPIDAGTLRTVLDDYVASRTPVYVLWPSGHHPTPKLRAFVDYL 288


>gi|53718371|ref|YP_107357.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|52208785|emb|CAH34723.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
          Length = 408

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 91  MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 150

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 151 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 210

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 211 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 269

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 270 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 327

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 328 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 374


>gi|300718423|ref|YP_003743226.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661]
 gi|299064259|emb|CAX61379.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661]
          Length = 299

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 140/284 (49%), Gaps = 24/284 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++LR + VV  +GS T AAEQL  + S ISR +S LE ++   L +R  R + LT
Sbjct: 1   MKITLEELRAWVVVVDTGSITAAAEQLSQTTSGISRALSRLEKKLQTTLLHRTTRRIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        E+   +ET + ++ +    PSG+LR+        +++   L EF   YP
Sbjct: 61  EEGQIFLEHAREILRSVETAEEQIAQRREIPSGRLRVNAATPFMLHVIVPLLDEFTARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  D+  ID+     D AIR+ + ++ SS+  R L +  +   A+P YL     P
Sbjct: 121 LIQLELNTDDLVIDLLEQQTDIAIRIGE-LRDSSIHARALGSSRLRLVASPDYLAKYGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQY 234
             +++LD H L+ F  L      D + +  V +  GEP    LQ+   +S      + Q 
Sbjct: 180 TRVEDLDDHRLLGFSQL------DRHNVWPVWKSEGEP----LQIKPTMSASSGETLRQL 229

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVIT----PSFTVYF 271
            V G GI  + D++ +++     LV +++D+      P   VY+
Sbjct: 230 AVYGQGIVRISDFLSREDRASGRLVTVLDDLTREMHHPIHAVYY 273


>gi|187922237|ref|YP_001893879.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713431|gb|ACD14655.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 309

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 140/308 (45%), Gaps = 23/308 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   A  GSF  AA+QL +  S++SR I+ LE ++GI LF R  RGL LTE G    
Sbjct: 7   LRAFLYAADLGSFNKAADQLQVKTSTVSRHIAELERDLGIALFNRSTRGLALTEGGHVFR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +     L+   +     +  P G LR+      G+  +  ++ EF+  YP I + ++
Sbjct: 67  EQGAAAIRMLDEACVATSSLNASPQGLLRVTMPTAFGRRHVVAHIPEFMRRYPHIDVDVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ++      D AIR+   +  S L+ R+L        A+P +++    P S  EL 
Sbjct: 127 ITDEIVNFVATGVDVAIRV-GVLPDSQLMARRLANHTSVVCASPDHVRLHGVPSSPAELS 185

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI------SCLQVNSYLSIMQYCVLGSG 240
            H  I F         D +W LA      G+           L+ N+  +I+   + GSG
Sbjct: 186 THPAIRFA-----IAGDDSWFLARQSGADGQEEAVEVKLRGRLRANNIEAILDLAIAGSG 240

Query: 241 IALLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNF---I 290
            ALLP + + +      LVR++ D      +    ++  YP     + K++AF +F   +
Sbjct: 241 AALLPLWAIGEPLRTGLLVRLLPDWQGQATSSPPAIWGVYPRKKTVSSKVRAFLDFYSDM 300

Query: 291 FLKARDWK 298
           F + R W+
Sbjct: 301 FSRERYWE 308


>gi|209885918|ref|YP_002289775.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
 gi|209874114|gb|ACI93910.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
          Length = 297

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 128/284 (45%), Gaps = 8/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ L  F  +AR      AA +L +  +++SR+IS LE  + +KLF R   G  LTEQ
Sbjct: 2   FNWNDLVFFLELARQNRLAPAARRLRVDHTTVSRRISELERNLSVKLFDRKPDGFVLTEQ 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L  V   +  ++      L    +  +G++R+ T   +G   L   L E     P I
Sbjct: 62  GHRLFVVAERIEQEIGNVPQALGAEDMAATGRVRVVTMEGIGAFFLAERLAELAQRQPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+ +   + ++   AD  I    P     L+ RKL +  +  YA+  Y+     P  
Sbjct: 122 VVELVTERHIVSLTKREADIFISFIPP-TGQRLVVRKLGSFRLALYASSAYISRNGMPKD 180

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H  + +  DLI   ++   WL  V  P+        + +S  +       G+GI
Sbjct: 181 HSELIHHTFVDYVEDLI--AIQPVRWLLDVIDPL----TVSFRSSSMHAQQNAIAAGAGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            LLP +  K NP LV I+ D +     +Y    E L+   ++++
Sbjct: 235 GLLPLFSAKRNPGLVPILADAVQVHRDIYLSVHEDLEFLARVRS 278


>gi|107103144|ref|ZP_01367062.1| hypothetical protein PaerPA_01004213 [Pseudomonas aeruginosa PACS2]
 gi|218890145|ref|YP_002439009.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254236544|ref|ZP_04929867.1| hypothetical protein PACG_02543 [Pseudomonas aeruginosa C3719]
 gi|126168475|gb|EAZ53986.1| hypothetical protein PACG_02543 [Pseudomonas aeruginosa C3719]
 gi|218770368|emb|CAW26133.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 302

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA +G FT AAE++ +S S ISRQ++ LE  +  +L YR  R ++L+E G 
Sbjct: 4   WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     + + S +P G LR+   +  G+  +   +  F+  YP +++
Sbjct: 64  TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  S L+  +L    M+  A P YL+    P S  
Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCATPEYLRRHGTPQSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL + N +     +   +ED     T  R  G  R      NS  +++   + G G+  L
Sbjct: 183 ELGQFNCLIGSSDLWSFLEDGR--ETQHRVQGNWR-----CNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V +   +  LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 236 PDYYVIEHLRSGRLVSLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYL 284


>gi|225851601|ref|YP_002731834.1| LysR family transcriptional regulator [Brucella melitensis ATCC
           23457]
 gi|256264890|ref|ZP_05467422.1| bacterial regulatory protein LysR [Brucella melitensis bv. 2 str.
           63/9]
 gi|225639966|gb|ACN99879.1| transcriptional regulator, LysR family protein [Brucella melitensis
           ATCC 23457]
 gi|263095344|gb|EEZ18971.1| bacterial regulatory protein LysR [Brucella melitensis bv. 2 str.
           63/9]
 gi|326408072|gb|ADZ65137.1| LysR family transcriptional regulator [Brucella melitensis M28]
 gi|326537788|gb|ADZ86003.1| transcriptional regulator, LysR family protein [Brucella melitensis
           M5-90]
          Length = 297

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G +L 
Sbjct: 9   LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +P+I I+L 
Sbjct: 69  AQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPNIHIELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   Q+L 
Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+ I     +P   E F W  T  R   + RI+    L   S   ++Q C+ G G+A L
Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P DY  +  ++  LV ++ D        +  YP   ++   L A 
Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289


>gi|113969039|ref|YP_732832.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|117921876|ref|YP_871068.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|113883723|gb|ABI37775.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
 gi|117614208|gb|ABK49662.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 303

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 144/298 (48%), Gaps = 18/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE E+G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEELGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPAYLKARGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +EL +H+ I  G      + P        +    R +        +VNS + + Q  +  
Sbjct: 182 KELSEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV--------RVNSPIMVKQLALDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA+L +   K    N  LV I+++     F VY  Y    +    + AF +F F+K
Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISAFLDF-FVK 290


>gi|261211917|ref|ZP_05926203.1| transcriptional regulator [Vibrio sp. RC341]
 gi|260838525|gb|EEX65176.1| transcriptional regulator [Vibrio sp. RC341]
          Length = 266

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 133/263 (50%), Gaps = 9/263 (3%)

Query: 32  SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91
           ++I+R+I  LE  + ++L  RHAR LTLTE G + ++  S +  +L +   E+ +     
Sbjct: 5   ATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGA 64

Query: 92  SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151
           SG++RI+   +L + ++      F+  YPDI I+L++ N+  D+     D   R+  P +
Sbjct: 65  SGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRV-GPQR 123

Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211
            SSLI RK+  +     A+P+YL N  +P   +EL +H L+    L+   + +      V
Sbjct: 124 DSSLIARKIGEVKDILVASPNYLANHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETIV 183

Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFT 268
           +   G  + S L V     +   C  G GI L+PD ++++   + +LV+++ D  +    
Sbjct: 184 NTDRGRFQASALNV-----VRSACSEGLGITLMPDVMLREFLSDGSLVQVLSDWSSNPRD 238

Query: 269 VYFCYPEALKNTGKLKAFRNFIF 291
           +Y  Y        K++ F +F+ 
Sbjct: 239 IYMLYNHKDHQPEKVRLFIDFVI 261


>gi|154244922|ref|YP_001415880.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159007|gb|ABS66223.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 299

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 12/257 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +LR+F  VAR GSF  AA  L +  S++SR ++ LE E+  +L +R  R ++LTE 
Sbjct: 1   MDTAQLRIFVHVARRGSFAAAARDLDMDASAVSRAVAALEAELDARLMHRTTRAMSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  +L+  + E+  +  +P G LR+  ++  G+  L   L E    +P +
Sbjct: 61  GQAYLARVEPILDELDRARDEVASARAEPVGTLRLTASVAFGEACLMPLLAEMRTRFPRL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ LIL + ++D++ +  D A+RL  P   + +I  +L        A+P Y      P +
Sbjct: 121 KLDLILTDTNLDLATERIDMALRL-APDVRADVIGIRLFATRYRVVASPDYCAREGAPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            QE+ KH  I FG      + DF   W+   D  + E  +   + ++S L+I +    G 
Sbjct: 180 PQEVGKHCAIVFG------LPDFRLRWMFRRDGQVEEVAVRGDIAISSGLAIRRAARDGL 233

Query: 240 GIALLPDYIVKDNPNLV 256
           G+ALLPD++V   P+L 
Sbjct: 234 GLALLPDWLV--GPDLA 248


>gi|304395346|ref|ZP_07377230.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304357599|gb|EFM21962.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 305

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 139/286 (48%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT +G +  
Sbjct: 7   MQIFIRVAEAGSFVRAAETLSLPSSTVTSTIKNLEKYLQVRLLNRTTRRVSLTPEGLQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E T+  L +S+ +P G+LR+     +   ++  NLK+F  LYPDI + + 
Sbjct: 67  AQCREILALIEHTEASLADSNRRPRGRLRVDMPGGIAHFIVLPNLKDFYRLYPDIYLMIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR  + +  S+L+ R L        A+P YL+    P + + L 
Sbjct: 127 VSDRQVDLVQEGVDCVIRTGE-LTDSTLVARPLGRFRWLTCASPDYLREYGIPETPEALS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I +     +   +  ++   +     P      VN     ++ C+ G G+A L + 
Sbjct: 186 QHRAIHYFSGSGRRTNELRFIRGAE-AFSVPVEGDTAVNETGLYIRLCLEGFGLAQLAEN 244

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  N     LV ++ D   PS  V   YP     +  ++AF +++
Sbjct: 245 VISKNLQQGKLVEVLADWQPPSVPVTMLYPHQRFLSPAVRAFADWV 290


>gi|238021580|ref|ZP_04602006.1| hypothetical protein GCWU000324_01480 [Kingella oralis ATCC 51147]
 gi|294671432|ref|ZP_06736280.1| hypothetical protein NEIELOOT_03139 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|237866194|gb|EEP67236.1| hypothetical protein GCWU000324_01480 [Kingella oralis ATCC 51147]
 gi|291306865|gb|EFE48108.1| hypothetical protein NEIELOOT_03139 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 299

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 141/292 (48%), Gaps = 10/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F    +SGSFT AA+QL L++S+I ++I  LE  + ++L  R+ R L  T++G
Sbjct: 5   NLNDMTAFVASVKSGSFTAAAKQLGLTRSTIGKRIVRLEARLNVRLLQRNTRNLAPTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   + V  +LE  +  L + S++P G+L+I+  + LG+ +L   L +FL  YP   
Sbjct: 65  RLFYERCTAVLEELENAEQCLAQRSIEPQGRLKISAPLVLGKTILPPLLADFLHRYPQTS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L +   D+  D  D A+R   P Q  SLI R + +  M   AAP YL     P S 
Sbjct: 125 VELSLTDDYADLISDGYDLALRNGNPPQFDSLIARTVGSQQMLTCAAPGYLVQHGTPQSP 184

Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L  H  + F  G  + +    F          G  R S    ++  ++++  +   GI
Sbjct: 185 DDLAHHQCLHFLHGGRVSRWR--FQQKGKETTFQGSGRFSA---DNGEALLELALSAFGI 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y+V+   D  +L  ++ D       V   YP   + + K++A  + +
Sbjct: 240 VQLPHYLVQTALDAGSLKSVLSDFQPKPVPVMAVYPSRKQLSPKVRALVDMM 291


>gi|168229952|ref|ZP_02655010.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168241087|ref|ZP_02666019.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448912|ref|YP_002045592.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194471408|ref|ZP_03077392.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197249654|ref|YP_002146485.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194407216|gb|ACF67435.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457772|gb|EDX46611.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197213357|gb|ACH50754.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205335563|gb|EDZ22327.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339551|gb|EDZ26315.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 302

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 144/292 (49%), Gaps = 13/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + ++  V   GSF  AAE L L + +++R +  LE ++G+KL +R  R +++T++G +
Sbjct: 7   EAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSMTDEGEE 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  +L+  +  L  S+  P G+LR+   I L + ++   L +F   YPDI+I 
Sbjct: 67  FYQRCLSLLSELDDVR-RLFSSTQPPKGRLRLDVPITLARAVIIPALGDFQNRYPDIEIV 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DC IRL + +  SS + R+L T  M   AAP YL     P SI E
Sbjct: 126 LGTSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGTPHSIDE 184

Query: 186 LDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI-- 241
           L K H  + F       ++   W  TVD  I   +I S + V++  + +   + G G+  
Sbjct: 185 LMKSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKIPSSILVDNSEAFLSCGLAGLGVLH 242

Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P    +I      L  I+ D   P   V   YP+      K++ F +++
Sbjct: 243 GLRPSLAPFIASG--ELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWL 292


>gi|167565109|ref|ZP_02358025.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 303

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 140/291 (48%), Gaps = 12/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F VVA +G F+ AA QL  + SS++R +  LE  +G+ L  R  R +TLT+ G+   
Sbjct: 7   LQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L      + ++  +P G LR++  +   + +L  +L  FL  YP + + L+
Sbjct: 67  DQIGALLSQLVEADESVADAGSEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D++ D  D A+R+  P Q   L+ R+L+       A+  YL     P++  +L 
Sbjct: 127 VSDAYLDLATDRIDVAVRIGAPAQDPGLVVRRLMENRRIVVASHDYLDTMGTPVAPGDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246
            H  + F    P      +W  + D    +  ++     + L I++  VL G GIAL+P 
Sbjct: 187 SHRCLRF----PYRQGRQSWTFSRDGQSDKVEVNGRLTANSLDILRESVLSGQGIALVPT 242

Query: 247 YIVKDNPNLVRIM----EDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V D+    R++       +TP      VY  Y    +++ K++ F  F+
Sbjct: 243 WLVHDDVAAGRMLPLFESWCVTPPGGGAQVYAAYLPNRRHSRKVQTFIAFL 293


>gi|157960433|ref|YP_001500467.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845433|gb|ABV85932.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 303

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 145/294 (49%), Gaps = 17/294 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA ++ + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +  S +  ++E  +  ++ +    SG LRIA  +   Q L+      FL LYP+I+
Sbjct: 63  ALFFQHCSSISDEIEAAKATVENTHNDVSGLLRIAIPVSFSQELIATLCSGFLRLYPNIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDSDVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKIHGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           Q+L +H+ I  G      + P        +    R +        +VNS + + Q  +  
Sbjct: 182 QDLAEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV--------RVNSAVMVKQLVMDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GIA+L + + K+   + +LV I+++    +F VY  Y    +    +  F +F
Sbjct: 234 FGIAMLSNSVCKNELASGSLVPILQEWPMEAFKVYGVYSSRRQLATNISVFLDF 287


>gi|78061647|ref|YP_371555.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969532|gb|ABB10911.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 308

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 141/290 (48%), Gaps = 10/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA +G F+ AA +L ++ SS++R +  LE  +G  L  R  R +TLT+ GS   
Sbjct: 7   LRAFIDVAETGGFSKAARRLGVATSSVTRLMDALEKSLGSALLTRTTRHVTLTDAGSAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + V   L+     + ++ +   G LR++  +  G+  L  ++  FL  +P I + L+
Sbjct: 67  EQITRVLSDLDEADGSVSDTGIDAVGPLRVSMPVTFGRLCLGPHIASFLQQHPRISLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D++ +  D A+R+  P    +LI  +L   H +  A+  YL++   P S ++L 
Sbjct: 127 LSDSTLDLAAERIDVAVRIGTPANQPNLIVNRLAEHHRYVVASRDYLESNGIPTSPEDLR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F          F    + +      R+S   VN+   + +  + G GIALLP +
Sbjct: 187 NHQCLRFAYQAALQRWSFTRAGSTEHVEIHGRLS---VNNSDVLREVVISGLGIALLPQW 243

Query: 248 IVKDN---PNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +V+++     L R+ ED  + P   +  VY  Y    +++ K+ A  +F+
Sbjct: 244 LVEEDVMAGRLTRLFEDYSVNPLDQTVCVYAAYLPNRRHSRKVHALLDFL 293


>gi|90577583|ref|ZP_01233394.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90440669|gb|EAS65849.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 309

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 140/289 (48%), Gaps = 13/289 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + VF  V + G F  AAE    S S +S++I+ LE+ +G++L  R  R + LT +G 
Sbjct: 7   FDGINVFVQVVKCGGFGAAAEVTGHSNSYVSKEITKLESRLGVRLLNRTTRSIALTPEGK 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++    E    E+ +S+V+P G L+++  +  G++ L      +L  YP++ +
Sbjct: 67  TYYQECVQLISDAEQAIAEITQSTVEPKGTLKVSCPVWFGKHYLADVFTTYLSRYPEVTL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +K ID+  D  D  IR    +  SSLI +++    +   +   YLK+   P    
Sbjct: 127 DLDMSDKPIDVIADGYDLVIRATAKLDDSSLICKRIYRSRICTVSTKQYLKDHGYPQHPS 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGSG 240
           EL  H+   + +L     + FN    +D+     + E +   L  N+ +S ++    G G
Sbjct: 187 ELSAHSCFCYTNL-----KKFNMWEYLDKAGNKTLVEVQQRVLSNNTEMS-LELVTKGLG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  +P++ ++    + +L  + +D I P   VY  YP     T K++ F
Sbjct: 241 IIRVPEFYIETQLQSGDLTLLFDDYIFPEIDVYALYPTRKHVTSKVRFF 289


>gi|330821362|ref|YP_004350224.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327373357|gb|AEA64712.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 319

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 148/297 (49%), Gaps = 18/297 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F     +GSFT AA++L LS+  +SR+++ LE  + ++L  R+ R L +TE G  
Sbjct: 4   DDLRIFLATVDAGSFTGAADKLLLSKQFVSRRMAALEAALHVRLLNRNTRKLAVTESGQA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++   +  +     +  G L+I+  +  G + L   L EFL  +P ++++
Sbjct: 64  FYLHAQRILAEVAQAEEAMSARRTELHGSLKISAPMSFGMSHLSPLLAEFLAAHPAVRLE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D A+R+ + +  S+L+ R L T+ M A  +P Y ++  EP +  E
Sbjct: 124 VELSDRRVDLIGEGFDLALRIGQ-LADSTLVARTLGTLRMIACCSPAYRRSHGEPTAPAE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241
           L +H  + +G    +  + + +    + P G  R   +Q     N+   +    + G G+
Sbjct: 183 LHRHACLLYGQ---ESRDGWEF----ETPEGR-RAYAVQGPLIANNGDVVRDAAIAGLGV 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ALLP +IV     +  LV I+    TP   +   YP+  + +  ++    F FL+ R
Sbjct: 235 ALLPQFIVGPAIASGALVTILAAHATPPLRLSAVYPQHRQGSTAIRTL--FAFLEER 289


>gi|313202143|ref|YP_004040801.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441459|gb|ADQ85565.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 314

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 152/291 (52%), Gaps = 8/291 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D ++ ++ F  V    SFT AA  L+L +++IS Q+  LE  +G+KL  R  R +++
Sbjct: 1   MAMDRFEAMQAFTRVVELASFTKAALSLNLPKTTISAQVQALENRLGVKLLNRTTRHVSV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G+  +     + ++LE T+  L++++ +PSG+LR+     +G+ +L   L +F   Y
Sbjct: 61  TTDGAAYYERAVALLNELEETEAALRQATSRPSGRLRVDVPGSIGRRILIPALADFTEKY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI +++  +++ +D+  +  DC IR   P+   SL+ R++ ++     A P YL+    
Sbjct: 121 PDIILEMGCNDRPVDLLEEGVDCVIRGGDPLD-QSLVARRVASLRFVTCATPGYLRKHGI 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLG 238
           PL  ++L++H  I +       + +F++    +R  +   R   +  N   + +  C+ G
Sbjct: 180 PLQPRDLERHTGIHYFSSKTGKVYEFDFERDGERYEVSSHRK--MIFNDGDACLAACLAG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+     ++V++   +  L  ++   ++ +  +Y  YP+    + K++AF
Sbjct: 238 LGVFQAATFMVQEHIASGELQVVLGTHLSENLPLYVLYPQNRHLSSKVRAF 288


>gi|296162233|ref|ZP_06845028.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887500|gb|EFG67323.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 305

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 145/296 (48%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE G+
Sbjct: 4   FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++   +  L      P+G +R+ T+  L + LL   L +F   YP+I +
Sbjct: 64  LFYERCVRILAEVAEAESSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPEIDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +++ID+  D  DC IR+  P + SSL+ R++    +   A+P YL+   EP +++
Sbjct: 124 RLGLADRNIDLIQDGVDCVIRMGTP-EESSLVARRIGQARIVTCASPAYLEKYGEPTTLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L +H  + +  +  +  + F +   VD  + +  + S L VN     +   VLG GI  
Sbjct: 183 ALSEHRAVNY--VSARTGKTFPFEYEVDGELAKVTLKSVLAVNDGSVYIGAAVLGHGIIQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              ++V D      L  I+    +P   +   Y      + +L+AF  ++   AR+
Sbjct: 241 PSRFMVSDLIKQGALKEILTTYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARN 296


>gi|172065125|ref|YP_001815837.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997367|gb|ACB68284.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 294

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 140/295 (47%), Gaps = 16/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVSTVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLAAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GALEDSTLIARPLGAWKMIACASPAYLKRQGTPDT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
             +L  H  + +G           W   VD   G  R   +Q     N+   +    + G
Sbjct: 180 PADLAAHTCLLYGR-----ERRVGWEFRVD---GAARTFDVQGPLVANNGEVVRDAAIAG 231

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLP +IV    D+  LV +++       T+   +P+  +    L+ F  F+
Sbjct: 232 LGIALLPHFIVGAALDSGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFL 286


>gi|226199393|ref|ZP_03794951.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225928469|gb|EEH24498.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 415

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 98  MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 157

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 158 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 217

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 218 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 276

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 277 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 334

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 335 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 381


>gi|206580017|ref|YP_002237030.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569075|gb|ACI10851.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 294

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT +G +  
Sbjct: 7   MQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTPEGMQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E ++  L ES  +P G+LR+     +   ++  +L +F   YPDI + + 
Sbjct: 67  AQCREILALIEHSESTLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR+ + + +SSL+ R L        A+P YL+    P S + L 
Sbjct: 127 VSDRQVDLIQEGVDCVIRMGE-LNNSSLVARPLGCFRWVTCASPDYLREYGVPSSPEALS 185

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +H  + +     +  ++F ++    T   P+         VN     ++ C+ G G+A L
Sbjct: 186 QHRAVHYFSGQARRADEFRFVRHGETFSVPVS----GNAAVNETGLYIKMCLAGFGLAQL 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + IV D+     LV ++ D   P   V   YP     +  ++AF  ++
Sbjct: 242 AENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWM 290


>gi|134279870|ref|ZP_01766582.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|134249070|gb|EBA49152.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 441

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 124 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 183

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 184 EHCIKIITEITETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 243

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 244 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 302

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 303 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 360

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 361 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 407


>gi|254242328|ref|ZP_04935650.1| hypothetical protein PA2G_03069 [Pseudomonas aeruginosa 2192]
 gi|296387866|ref|ZP_06877341.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313109034|ref|ZP_07795007.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|126195706|gb|EAZ59769.1| hypothetical protein PA2G_03069 [Pseudomonas aeruginosa 2192]
 gi|310881509|gb|EFQ40103.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 302

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA +G FT AAE++ +S S ISRQ++ LE  +  +L YR  R ++L+E G 
Sbjct: 4   WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     + + S +P G LR+   +  G+  +   +  F+  YP +++
Sbjct: 64  TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  S L+  +L    M+  A P YL+    P S  
Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRLMYLCATPEYLRRHGTPQSPT 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL + N +     +   +ED     T  R  G  R      NS  +++   + G G+  L
Sbjct: 183 ELGQFNCLIGSSDLWSFLEDGR--ETQHRVQGNWR-----CNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V +   +  LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 236 PDYYVIEHLRSGRLVSLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYL 284


>gi|296155935|ref|ZP_06838774.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893441|gb|EFG73220.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 296

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 143/289 (49%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F     + +FT AA +L LS+  +SR++  LE  +G++L  R+ R L +T+ G +
Sbjct: 4   DDMRIFVATVDAHNFTAAANRLSLSKQFVSRRVMALEETLGVQLLIRNTRKLAVTDLGQE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++E  +  +        G LR++  +  G   L   +  FL  + D++ +
Sbjct: 64  FYERAKRILGEVEDAEQAMSLRRAGLRGLLRVSAPMSFGMAHLSPLVAMFLREHGDVRFE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D AIR+   +  S+LI +KLV I + A  +P Y++    P    +
Sbjct: 124 MDLSDRTVDVVGEGFDMAIRI-GALPDSTLIAQKLVDIRVVACCSPGYVRRRGTPAVPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L++H+ + +G          +W   VD       +   L+ N+   +    + G GI  L
Sbjct: 183 LERHSCLLYGH-----GGAVSWEFVVDGVTKGVEVHGPLRANNGELVRDAAIAGLGIVRL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD+IV D   +  LV ++ED +  +  VY  YP+  +++  ++A   F+
Sbjct: 238 PDFIVADALRSGQLVPVLEDFLPTATGVYAVYPQHRQSSLTIRALVEFL 286


>gi|311693827|gb|ADP96700.1| transcriptional regulator, LysR family protein [marine bacterium
           HP15]
          Length = 296

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 13/290 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  V  +GSF  A+E L +S++++SR +S LE+ +G++L  R  R L+LT +G   
Sbjct: 6   EMQTFCNVVEAGSFVAASESLGMSKAAVSRYVSELESRLGVRLLQRTTRRLSLTGEGEVF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +E  + E+   +    G LR+   +  G + L     EF   YPD+++ +
Sbjct: 66  YVRCRELLAGVEEAEAEITSRNDVARGTLRVNAPVSFGISHLAPLWGEFHARYPDVELSI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +DI  +  D AIR+   +QSS+L+ R++ +  + A A+P Y+     P   ++L
Sbjct: 126 DLSDRLVDIVEEGFDMAIRI-ATLQSSTLVSRRITSTRLIACASPDYIATHGSPAKPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H +I + +         +W    + P G   +     +  N+  +     + G GI L
Sbjct: 185 ASHRIIGYSNF----TTGNDW--PFEGPEGATSVRVRPWMYANNGETCCGAALAGQGIVL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P ++V  +     LV +M    +    VY  YP     T K++A  +++
Sbjct: 239 QPGFLVHKDLEAGRLVELMPAYRSTELGVYAVYPTRKFVTPKVRALVDYL 288


>gi|270261837|ref|ZP_06190109.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043713|gb|EFA16805.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 302

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 139/281 (49%), Gaps = 8/281 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F    ++GS+THAA  L L++S+I + I  LET +G++L  R  R L+LT++G  +   
Sbjct: 11  AFVAAVKAGSYTHAAGSLGLTRSAIGKSIVRLETRMGVRLLNRTTRSLSLTDEGRVMFDR 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   LE     +     KP+G LR++  +  GQ  +   L  +L  +P+++ ++   
Sbjct: 71  CRQILDDLEEVDAAMAMRRGKPTGTLRLSAPLSFGQRHILPILDVYLKKWPELRAEVSFS 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIR+ +P   S ++ R + + H+   A+P YL +   P +  +L +H
Sbjct: 131 DRFVDLIEEGFDIAIRIGEPRDDSRILTRTIASQHIVTCASPEYLSSRGVPETPADLTRH 190

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           + I     +    +  +W  AT +          L ++S  ++    + G GI  LP Y+
Sbjct: 191 DTI----FLLSAEKRRSWRFATPEGTFVYEGPGRLNLDSSEAMRASAIAGFGIVHLPTYL 246

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + ++     L+ ++E+   P   V   YP     + +++AF
Sbjct: 247 LGEDLRSGKLIPVLEEFPFPPEPVRLIYPSKRHLSPRIRAF 287


>gi|254258123|ref|ZP_04949177.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254216812|gb|EET06196.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 395

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 78  MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 137

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 138 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 197

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 198 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 256

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 257 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 314

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 315 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 361


>gi|254181679|ref|ZP_04888276.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184212217|gb|EDU09260.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 407

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 90  MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 149

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 150 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 209

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 210 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 268

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 269 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 326

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 327 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 373


>gi|254296273|ref|ZP_04963730.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157806130|gb|EDO83300.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 397

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 80  MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 139

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 140 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 199

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 200 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 258

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 259 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 316

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 317 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 363


>gi|126442213|ref|YP_001057833.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126221706|gb|ABN85212.1| transcriptional regulator [Burkholderia pseudomallei 668]
          Length = 435

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 118 MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 177

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 178 EHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 237

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 238 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 296

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 297 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 354

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 355 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 401


>gi|187476841|ref|YP_784865.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115421427|emb|CAJ47932.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 340

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 111/190 (58%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  V  + SFT AAE L L +++++  I  LE  +G++L  R  R ++LT  G+
Sbjct: 4   FQAMQVFVRVVEANSFTRAAESLTLPRTTVTTIIQNLERHLGVRLLNRTTRRISLTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++  + +  ++  T+  LQ+++ +P G+LRI     +GQ +L   L +F   YPD+++
Sbjct: 64  AYYKHATRILAEVYETEACLQDAAARPQGRLRIDVPASVGQLILIPALCDFHTRYPDVEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC IR  + ++ SSL+ R++ T+     A P YL+    P S+Q
Sbjct: 124 VIGMGDRKVDLVQEAVDCVIRSGE-LEDSSLVARRIGTVQTVTCATPSYLERYGTPESLQ 182

Query: 185 ELDKHNLITF 194
           +L++H+ + +
Sbjct: 183 DLERHHAVHY 192


>gi|34498937|ref|NP_903152.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34104786|gb|AAQ61143.1| probable transcriptional regulator, LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 315

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 140/292 (47%), Gaps = 24/292 (8%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH-- 67
           +F  V  +GSF+ AAE+L L++S++S+++  LE  + ++L  R  R L+LTE G + +  
Sbjct: 9   IFVAVVEAGSFSAAAERLGLTKSAVSKRVQQLEAGLNVRLLQRTTRSLSLTEAGERYYDR 68

Query: 68  -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +  + E     LQ    +P G LR+A  +  G+  L     EFL  YPDIQ+ L
Sbjct: 69  ARGALALAREAEEVAAGLQG---RPQGLLRVAAPMAFGRLHLSPLAAEFLRRYPDIQLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D++ +D+     D A+R+   +  + ++ R+L    +   A+P YL     P    EL
Sbjct: 126 AMDDRMVDLVEGGYDLAVRIGN-LPDNRMVARRLAPCRVAVCASPDYLAAHGRPAHPSEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +HN I +            W  T   P GE R+      QVN+  +     + G GI  
Sbjct: 185 ARHNCIHYS----YYRGGAYW--TFQGPDGEIRVQPRGNYQVNNSEARRDALLAGLGICE 238

Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P +IV   P+L       ++ D   P   ++  +P+  +   K +AF +F+
Sbjct: 239 MPTFIV--GPDLAAGRLEAVLTDYPLPPHAIHVVFPQ-RRLPAKARAFIDFL 287


>gi|313108025|ref|ZP_07794191.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310880693|gb|EFQ39287.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 291

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 149/294 (50%), Gaps = 10/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA +GSFT AA+ L + ++++S  +  LE ++G +L +R  R + LT  GS + 
Sbjct: 1   MRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTHDGSVVL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +    + S + SG+L++     + + L+   L EF   +PDI+++L 
Sbjct: 61  ERCRHLLEDMEELESLFHDGS-RASGRLKVDVPSRVARLLIAPALPEFFRQHPDIELELG 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+ + + +SSL+ R+L  + +   A+P YL+   EP +  +LD
Sbjct: 120 SSDRSVDLVQEGVDCVLRVGQ-LGNSSLVARRLGEMQLINCASPAYLEEHGEPRTPADLD 178

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +    P       W    D R +     S + VN+  S +  C+ G G+  +P 
Sbjct: 179 RHWAVNYAS--PSSGRVLPWEYREDGRTLTRALRSRVTVNNAESYIACCLSGLGLIQIPA 236

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           Y V+++     L  ++      +   Y  YP     + +++AF +++   L+AR
Sbjct: 237 YDVREHLQRGELREVLPQWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLLRAR 290


>gi|33594412|ref|NP_882056.1| LysR family regulatory protein [Bordetella pertussis Tohama I]
 gi|33564487|emb|CAE43800.1| LysR family regulatory protein [Bordetella pertussis Tohama I]
 gi|332383823|gb|AEE68670.1| LysR family regulatory protein [Bordetella pertussis CS]
          Length = 302

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D+ RVF  VA  GSF  AA  L L ++S+S  +  LE +VG +L +R  R + LT  G+
Sbjct: 4   FDQYRVFAQVAEMGSFIKAAHTLELPRASVSAAVQQLEGQVGARLLHRTTRQVRLTADGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +  ++E      Q S  + +G+L I     + + L+   L   L  +P +Q+
Sbjct: 64  QLLERIRPLLAEVEDIDQLFQASQRQAAGRLNIDVPSRIARRLVAPALPALLRRHPRLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+  +  DCA+R+   + SSSL+ R L ++ +   A+P YL+   EP    
Sbjct: 124 ALGSGDRAIDLVREGVDCAVRI-GVLHSSSLVVRPLGSLALINCASPAYLREHGEPGHPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           EL   +  T G   P+      W      P G   +    S + VN+  S +  C+ G G
Sbjct: 183 ELAAGHW-TVGYASPQTGRALPWECAT--PRGGTNLVEAASRVVVNNAESYIACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  +P Y V+   D   LV +M D    S  V   YP   + + +L  F
Sbjct: 240 LIQIPRYDVQHLLDGGQLVEVMPDRRAASMPVALLYPHRRQRSRRLAVF 288


>gi|258543481|ref|YP_003188914.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634559|dbj|BAI00535.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637617|dbj|BAI03586.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640669|dbj|BAI06631.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643726|dbj|BAI09681.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646781|dbj|BAI12729.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649834|dbj|BAI15775.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652822|dbj|BAI18756.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655878|dbj|BAI21805.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 305

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 3/244 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  V  +GSFT AA  + LS + +++ ++ LET +G+ LF+R  R L+LTE G   
Sbjct: 7   SMQIFVKVIAAGSFTGAARLMALSPTMVTKHVTALETRLGVSLFHRSTRHLSLTEAGRLF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  +  + E   +P G+LR+   +      +   L EF   YP +QI+L
Sbjct: 67  LESCQKILADVENMEQTVSEQYREPRGQLRLNAPVSFAIRYVAPYLSEFSRRYPQVQIEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ +D+  +  D  +R+R  +  S+L  RKL  + M   A+P YL     P  + EL
Sbjct: 127 GLNDRPVDLVEEGWDLTLRIRN-LTISTLRARKLAAVRMVICASPSYLAKAGTPTHVDEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN + +          +++    ++ +    + C   N+  ++ +  V G+GIA LP 
Sbjct: 186 QHHNCLGYTLSGNNSASRWHFGDNGEKTVSVSGLLC--ANNGDALREAAVAGAGIAYLPL 243

Query: 247 YIVK 250
           ++V 
Sbjct: 244 FVVS 247


>gi|330810481|ref|YP_004354943.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378589|gb|AEA69939.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 292

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 142/290 (48%), Gaps = 10/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  V  SGSFT AAE+L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEEMRIFAQVMESGSFTAAAEKLGLSKQFVSRKLMELEQRLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     + +++E  +  +   + +P G +R++  +      L   L  FL  YP + +
Sbjct: 64  RYYEAALRLLNEVEQVEQGISGQTSEPRGTIRLSAPLSFAVAHLGSLLPLFLQRYPGVSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ S+LI R++ TI     A+P YL     P   +
Sbjct: 124 EVDLSDRSVDLLGEGYDLALRI-GVLEDSTLIARRIATIERVYCASPTYLAQKGTPARPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ + +G           W      +P+       ++ N+   +    + G GI  
Sbjct: 183 DLRNHDCLPYGH-----SRQVQWRFVGAGKPLTLEVTGRMRANNGDLLRDAAIAGMGITY 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +I+ D   +  L++++E   T    +   YP+  ++   ++A   F+
Sbjct: 238 LPAFILGDALKDGRLIKVLEGFETEPLALSAVYPQHRQSARPVQALVEFL 287


>gi|167838727|ref|ZP_02465586.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 334

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 143/287 (49%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLR+     +G+ ++  +L EF   YPDI +Q+ 
Sbjct: 67  ERCVRILADVEETEASFQVNNRKPHGKLRVDMPGSIGRLIVIPSLCEFHSRYPDIDLQIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP +I+ L 
Sbjct: 127 LTDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFEGTTVASPAYLEKYGEPQTIEALA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +     +     +W   +D    E +++ L  VN   + +   + G G+   P 
Sbjct: 186 QHKAVNY--FSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGIEGFGLIQPPL 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V     N  L  ++         +   YP +   + K++ F +++
Sbjct: 244 FMVLPHLRNGTLKEVLPGHKPLPMPISVVYPHSRHLSPKVRVFVDWV 290


>gi|323498536|ref|ZP_08103529.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323316425|gb|EGA69443.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 303

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 145/289 (50%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + VF  V   G F+ AA++L +++S++S++I+ LE E+GI+L +R  R L+LTE G 
Sbjct: 4   FSSIPVFVAVVECGGFSPAADKLKITKSAVSKRINQLEDELGIRLLHRTTRKLSLTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +   S+     +     + E   +P GKL++   +  G   +   + EFL LY D++I
Sbjct: 64  RYYSYVSQSLSLAQQGVDAVTELQGQPRGKLKLTAPMSFGVQYVAPLVAEFLALYSDVEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D+     D  IR+   +  S+L+ ++L        A+  YL    +P    
Sbjct: 124 DLQLEDQMVDLIESGFDIGIRIGH-LPLSNLVAKRLTPCKSILCASEDYLNQFGQPTRPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +     +   ++ + +        PR   L VN+  +I +  + G GI  L
Sbjct: 183 DLTQHNCLQYAYF--RGGNEWTFTSHGKEFKVMPR-GRLVVNNSEAIRRALLEGLGIGQL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +IV  +     L+ +M++   P   VY  +PE      K++AF +FI
Sbjct: 240 PTFIVAKDIAAGKLMGVMQEYQLPEHAVYAVFPERKHMPLKVRAFLDFI 288


>gi|209518023|ref|ZP_03266854.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501527|gb|EEA01552.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 300

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 136/288 (47%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QIETFATVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H ++  +  +    VK SG LR++     G+  +   +  F + +PD+ I L
Sbjct: 66  LEDCQRILHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P S+ +L
Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLAENRRVCVASPAYLSRRGAPHSLADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +  G       +   W+   D  +   ++S  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLALG---ASANQQRGWMFQQDGKVVSIKVSGTMECSDGAVLHEWCLAGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V        LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGTEIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|207723659|ref|YP_002254057.1| transcription regulator protein [Ralstonia solanacearum MolK2]
 gi|206588862|emb|CAQ35824.1| transcription regulator protein [Ralstonia solanacearum MolK2]
          Length = 299

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 132/285 (46%), Gaps = 7/285 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F      GS + AA +L LS     RQ+  LE  +GIKL  R  R  +LT+ G   +
Sbjct: 7   MQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGALGIKLLNRTTRRQSLTDGGRLFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  Q ++ ES   P G+LRI+  I  G   L   L EF+  +PDI ++L 
Sbjct: 67  ERAKNILAEMEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPDITVELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D A R    +  S L+ R+L    +   A+P YLK   +P + ++L 
Sbjct: 127 LTNRTVDLVDEAFDAAFRT-GDLPDSGLMARRLAPHRLILCASPAYLKMRGQPRTPEDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KH  + F     +    F+     D  +  P       +S  ++    V G GI L P  
Sbjct: 186 KHECLVFAHTSLRTQWSFDG---PDGSVKVPIKGRFLADSGEALRAAAVAGVGIILQPAE 242

Query: 248 IVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           ++ ++     L RI++        ++  Y    + T KL++F +F
Sbjct: 243 LLAEDIQTGLLTRILKRYEPTPRPLHVLYAPDRRMTQKLRSFLDF 287


>gi|260459260|ref|ZP_05807515.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259034814|gb|EEW36070.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 311

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 141/285 (49%), Gaps = 13/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AA+++ LS +++S+ +  LE  +G +L  R  R ++LTE G+ ++
Sbjct: 7   MTVFANVVSEGSFAGAAKRMRLSPAAVSKHVHLLEEWLGARLLNRTTRRISLTEVGASVY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +   +E  +    ES  +P+G LR++  I  G   L   + E+L  YP++ ++L+
Sbjct: 67  ERSLRILEDVEDVRTSAAESHARPTGSLRVSAPISFGALYLGKVVAEYLAAYPEVSVELV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +DI  +  D A+R+  P+  S+LI R++        A+P Y+     P    +L 
Sbjct: 127 LDDRVVDIVEEGLDVAVRI-APLTDSNLIARRIAPSWEVICASPEYIDRRGRPTKPSDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVL-GSGIALL 244
            H+ + +     +    F      D P GE   ++S     +   +++   L G+GI L 
Sbjct: 186 DHDCLDYALRAGRGKWRF------DGPEGEVAVKVSARMTATNGQLLRDAALSGAGIVLG 239

Query: 245 PDYIVKD--NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAF 286
           P +++ +      + I+  +  P   ++Y  YP     + K+++F
Sbjct: 240 PTFLLGEAVRSGWLEIVMPLFKPVGRSIYAVYPSRRHLSAKVQSF 284


>gi|291085350|ref|ZP_06352831.2| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291070710|gb|EFE08819.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 305

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 143/292 (48%), Gaps = 12/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  V   G F  AAE LHL + ++++ I  LE ++G KL  R  R ++LT++G 
Sbjct: 2   FEYMNIFVQVVEQGGFARAAEVLHLHRPAVTKAIQHLEDDLGAKLLNRTTRKVSLTDEGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++ T  +   ++        +   P GKLR+   + L  ++L   LK+F   YPDI++
Sbjct: 62  AFYQRTKVLLADVDDIMASFSPTR-PPRGKLRVNAPLSLAHSVLVPALKDFQSRYPDIEM 120

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+  +  DC IR+ + +Q SSLI R+L  + M   A+P YL+    P + +
Sbjct: 121 ILTSTDRRIDLLAEGIDCMIRIGE-LQDSSLISRRLGAVKMVTCASPDYLQQHGIPQTPE 179

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI-- 241
           +L +H  + F     +  E   W   + D  +       + V++   ++  C+ G GI  
Sbjct: 180 DLSRHQAVNF--FSERHREALEWSFVSADETVSFTPAGRISVDNSDILLTGCLAGLGIIR 237

Query: 242 ---ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              A+L  Y+   +  LV ++ +    S  V   YP+      +++ F +++
Sbjct: 238 GVHAVLAPYL--QSGQLVEVLANYAGESKPVSVLYPDRRHLAPRVRVFIDWL 287


>gi|78066008|ref|YP_368777.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966753|gb|ABB08133.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 307

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 135/290 (46%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA+ L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAKAADLLGVSQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAELIESEASAQALEPHGLVRVNAPMSFGLRHLSPVLPAFLERYPRVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     A+P YL     P   
Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLDRRGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++++H  +T+ +L       F   A+ D  +G      ++ N+   I+   + G G+AL
Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRQPASGDE-VGVSVHGRIRTNNADVIVPALIAGHGLAL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++V +   N  L  +M D       V    P  +    ++    +F+
Sbjct: 244 QPEFLVWEAMQNGELEEVMSDWKIADINVNLVTPPGMLRAARVTVLLDFL 293


>gi|83749104|ref|ZP_00946109.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83724225|gb|EAP71398.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 290

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 137/295 (46%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++  F  AAE + +  S++SR+I  LE  +G++L +R  R + LTE G  
Sbjct: 5   NDMALFVEVVKAKGFRSAAEAMGIPNSTLSRRIGTLEKAIGLRLLHRTTRKIELTEAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      +L E   +PSG LR +  +D     L   + EF  LYP I   
Sbjct: 65  YFERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFAGLYPGITFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D+  +  D AIR+  P + S LI R L ++  H YA+P YL    EP    +
Sbjct: 125 FDLTPRRVDLVSEPFDVAIRM-GPSEDSQLIARPLASLTPHLYASPGYLDRSGEPHKPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L++H  ++        ++D    ATV   +G        +NS   I +  VL  GI L+P
Sbjct: 184 LERHECLSILKAGSWTLQDGKRTATVS--VG----GRFTLNSVGMIRRLAVLDLGIVLMP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA-FRNFI-FLKAR 295
           + IV D   +  L RI+         VY     A+  T  L A  + FI FL+AR
Sbjct: 238 EEIVADELASGKLRRILPGWHGTPMPVY-----AITETRLLPAKTQRFIEFLRAR 287


>gi|297539930|ref|YP_003675699.1| LysR family transcriptional regulator [Methylotenera sp. 301]
 gi|297259277|gb|ADI31122.1| transcriptional regulator, LysR family [Methylotenera sp. 301]
          Length = 299

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 135/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  VA  GSFT AA+ L L ++S+S  +  LE  +G +L +R  R + LT  G  
Sbjct: 5   DAIKRFVRVAELGSFTKAADALGLPKASVSLAVQQLENRLGTQLLHRTTRKVQLTPDGQI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +V  +++      Q       G +R+  +  +  N++   L EFL  YP++Q+ 
Sbjct: 65  FYERGKDVLAEMDELDSLFQTDDASIRGLIRVDMSYPMAHNIVIPRLPEFLSRYPNLQVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC IR  K +Q S LI R L  +    YA+P YL    EPL +++
Sbjct: 125 LSSTDRQVDLIAEGFDCVIRTGK-LQDSGLIVRNLGVLTQTNYASPAYLAQHGEPLRLED 183

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H LI +        + F  W     + I  P  S L VN+       C+ G GI   
Sbjct: 184 LSNHWLIHYCVNAATKFDMFEYWDGQACQRISMP--SRLSVNNADGYQAACLAGLGIIQA 241

Query: 245 P----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P      +V +   LV I++    P+  V   YP     + +++ F +++
Sbjct: 242 PLIGGAKLVAEG-KLVEILKKFGAPAMPVSLVYPHRRNLSKRVRIFMDWL 290


>gi|161504629|ref|YP_001571741.1| hypothetical protein SARI_02745 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865976|gb|ABX22599.1| hypothetical protein SARI_02745 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 304

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 145/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V   GSF+ AAE+L  + S+ISR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVIEGGSFSRAAERLGQANSAISRSVKKLEMKLGVNLINRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +   +   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQIILQDMAAAETEILETRNTPRGLLRIDAATPVILHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EVKLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIIASPDYIDLYGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            S++EL +H  + F +  P  +    W +A  D  + E   S L  NS  ++ Q C+ G+
Sbjct: 180 KSVEELKQHVCLGFTE--PLLLN--TWPVACCDGQLYEIH-SGLSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D   P    F+  +    A+  + +++AF +F+
Sbjct: 235 GIACLSDYMIDKEIAQGTLVELMTDKRLPVEMPFSAVYYSDRAV--SPRIRAFVDFL 289


>gi|322831725|ref|YP_004211752.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|328725476|ref|XP_003248492.1| PREDICTED: uncharacterized HTH-type transcriptional regulator
           yafC-like [Acyrthosiphon pisum]
 gi|321166926|gb|ADW72625.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 302

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 140/295 (47%), Gaps = 20/295 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA + SF  A   L +S S++ + I+ +ET + ++LF+R  R +TLT +G
Sbjct: 3   NLSSLNTFVQVAETRSFVAAGRILGVSASAVGKSIARMETRLNVRLFHRSTRSVTLTVEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        +  +LE  + EL + +  P G+LR+  ++     LL   L EF+  YPDI 
Sbjct: 63  TLFLERCRRIVAELEAAESELSQLAESPRGRLRL--SLPQVSTLLLPVLGEFMRRYPDIG 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ +D+  +  D  +R  + +  S L  RKL T H     AP Y +    P   
Sbjct: 121 LDLDFTDRIVDVVEEGFDAVVRTGQ-LADSRLSMRKLGTFHHLLVGAPDYFEQYGTPAKP 179

Query: 184 QELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           QEL +H  + F     G L P  + ++  L+    P+       +  N+  +   + + G
Sbjct: 180 QELVEHRCLHFRFPNSGKLEPWPLPEYQDLSL---PVS------MVCNNIETRQCFALQG 230

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA LPD+ ++       LV +++D +  S   Y  +P     T KL+ F +F+
Sbjct: 231 LGIACLPDFSIRKELAGGQLVTVLDDYVKRSGDFYILWPSGGYMTPKLRVFIDFL 285


>gi|152988405|ref|YP_001347373.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963563|gb|ABR85588.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 306

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 142/289 (49%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +F  V    SFT AA+ L + +S++SR+I+ LE  +G++L  R  R L LTE G  
Sbjct: 4   DDALIFTRVVEYHSFTQAAQSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEVGQA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++ H     +  + +    PSG LRI + I+ GQ  L G L +F+  YP I  +
Sbjct: 64  YYERCRQIMHDFAEAEQAVMQLQQAPSGLLRITSPIEFGQMFLAGLLGDFMRQYPLITAE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D   +  D  I + +P + S+L+ R+L+       A+P YL     P S+ E
Sbjct: 124 VELASRSVDPLQEGVDIVIMVGQP-EDSTLVARRLLATGRWLCASPGYLAEHGTPGSVAE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +    L+    + + W  + D    +  +SC   N+     +  V G+GIA LP
Sbjct: 183 LAGHRAV----LLSTDSQRY-WPLSGDSLPCQRVLSC---NNITFAREAVVAGAGIAALP 234

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             I ++   N  LVR++ DV  P   +Y  YP       K+KAF +F+ 
Sbjct: 235 ALICEESVRNGRLVRLLPDVPLPVGELYAVYPSRRFQAMKVKAFLDFLI 283


>gi|16330261|ref|NP_440989.1| transcriptional regulator [Synechocystis sp. PCC 6803]
 gi|1652750|dbj|BAA17669.1| transcriptional regulator [Synechocystis sp. PCC 6803]
          Length = 295

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 143/296 (48%), Gaps = 19/296 (6%)

Query: 6   DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL   Y    V R GSF  AA +++L +S++++ +  LE E+ ++L +R  R +T T  
Sbjct: 2   DKLESIYAFTQVVREGSFAAAARKMNLGRSTVNKMVIALENELKVQLLHRSTRKVTPTPT 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  + ++   LE  ++ + +   +P G LR+   +  G   +   + +F+ L+  +
Sbjct: 62  GIAFYEKSVQILADLEEAELSVSQLHGEPKGLLRVNAPMTFGTMYIAPLVAKFMALHSQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL L+++ +D   +  D  IR+ +P++S+SLI + L    +   A+P YL     P +
Sbjct: 122 EVQLTLEDRFVDAIAEGYDLLIRIAQPLESASLICQPLFQTKLLLCASPEYLAVRGMPQA 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-----CLQVNSYLSIMQYCVL 237
           +++L +HN + +G         + +L       GE  IS     C      L+I      
Sbjct: 182 LEDLQRHNCLLYG--YSSGGSQWQFLGQA----GEKVISVSGNFCSNNGEALAIA--VAQ 233

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIALLP +IV+   +   +  I+ D      TV   YP       K+K F  F+
Sbjct: 234 GLGIALLPQFIVQPYLEAGKMQIILPDYCLRELTVSLIYPVNRHLATKVKLFTEFL 289


>gi|332533075|ref|ZP_08408945.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037554|gb|EGI74007.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 301

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 144/286 (50%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V + GSF+ AA++L +S   +S+ IS LE  +  +L +R  R +++TE G++ +
Sbjct: 7   MKTFLAVVQEGSFSKAADKLDISPQLVSKYISALEDNLRTRLLHRTTRKVSVTEAGNQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   +E  +  L   S   SG L I+  +  G   L G L +F   YP++++ L 
Sbjct: 67  QRCQQVIIDIEDMENSLNNLSESVSGVLSISAPMSFGTKHLAGLLVDFQKQYPNLKLDLR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI     D A+R+   +++S+LI +K+  IH+  +A+P YLK    P ++ +L 
Sbjct: 127 LTDQYVDIVEQGIDIALRI-GVLKNSTLIAKKIAPIHLAVFASPDYLKRHGTPQTLLDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN + +    P        L  V+    E ++ S    N+   ++   + G GIA+ P 
Sbjct: 186 SHNYLRYSHSEPT-----KRLFGVNELKSELKLESNFVANNGDLLLNTAIAGGGIAMQPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +I  +      +VRI++D       +Y  Y        K++AF +F
Sbjct: 241 FIAGEALAQGKVVRILKDHEPEPMGLYMVYANRQFLPSKVRAFVDF 286


>gi|167841327|ref|ZP_02468011.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 324

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  + KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 67  EHCIKIITEIAETDASFQVGNRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPDIVLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP+ I EL 
Sbjct: 127 LSDRPVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPVEIAELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D RP+       + VN   + +   V G G+     
Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGRPVEVRMNGAVTVNDSDAYVTCGVEGFGMIQPTL 243

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP+    + K++ F ++I
Sbjct: 244 FMVL--PHLLDGTLLEVLPGFNPKPKPISIVYPDNRHLSAKVRVFADWI 290


>gi|167737394|ref|ZP_02410168.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|217420235|ref|ZP_03451741.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217397539|gb|EEC37555.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 294

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 141/287 (49%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++    LG  +L   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LGAPVLP-VLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W    A  D  +  P+   +  N+  + + + + G G+A +PD
Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPQ--SMICNNVETRVCFAIRGRGLACVPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+D   +  L  +++  I    T +  +P     + KL+AF +FI
Sbjct: 242 FAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288


>gi|207743951|ref|YP_002260343.1| hypothetical protein RSIPO_02134 [Ralstonia solanacearum IPO1609]
 gi|206595353|emb|CAQ62280.1| hypothetical protein RSIPO_02134 [Ralstonia solanacearum IPO1609]
          Length = 284

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 136/293 (46%), Gaps = 17/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V ++  F  AAE + +  S++SR+I  LE  +G++L +R  R + LTE G    
Sbjct: 1   MALFVEVVKAKGFRSAAEAMGIPNSTLSRRIGTLEKAIGLRLLHRTTRKIELTEAGQLYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +      +L E   +PSG LR +  +D     L   + EF  LYP I     
Sbjct: 61  ERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFAGLYPGITFDFD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +D+  +  D AIR+  P + S LI R L ++  H YA+P YL    EP    +L+
Sbjct: 121 LTPRRVDLVSEPFDVAIRM-GPSEDSQLIARPLASLTPHLYASPGYLDRSGEPHKPADLE 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  ++        ++D    ATV   +G        +NS   I +  VL  GI L+P+ 
Sbjct: 180 RHECLSILKAGSWTLQDGKRTATVS--VG----GRFTLNSVGMIRRLAVLDLGIVLMPEE 233

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA-FRNFI-FLKAR 295
           IV D   +  L RI+         VY     A+  T  L A  + FI FL+AR
Sbjct: 234 IVADELASGKLRRILPGWHGTPMPVY-----AITETRLLPAKTQRFIEFLRAR 281


>gi|86158636|ref|YP_465421.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775147|gb|ABC81984.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 300

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 138/294 (46%), Gaps = 14/294 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++ VF  V  +GSFT AA  L L +SS+SR ++ LE E+GI+L  R  R L+LT+ 
Sbjct: 1   MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEGELGIRLLQRTTRRLSLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  T +    L     E      +P G +R+   +DL  +L +     FL  +P +
Sbjct: 61  GRAYYERTRDALAGLREASEEAAALGAEPRGTVRVTAPVDLAPDLAR-LTDAFLRAHPQV 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L  + +D+  +  D AIR    +  SSL+ RKL    +  +AAP YL+    P  
Sbjct: 120 RVEVSLTARYVDLVKEGFDLAIRA-GVLADSSLLARKLSDSALALFAAPSYLEARGRPRR 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
           + +L +H+ +    L     E   W  T  R  GE +++       + +  +    + G+
Sbjct: 179 LADLARHDCL----LYRAGGETAVWRLTGRR--GEEQVTVRGRAAADEFAFVRGMLLAGA 232

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIAL+P  +V  +     L R++   +     V   +P        +  FR+ I
Sbjct: 233 GIALVPTGMVAAHLRTGALERVLPQYVRRGGPVSVVWPSRRYEPVAVARFRDAI 286


>gi|119524024|gb|ABL77403.1| PtrA [Pseudomonas chlororaphis]
          Length = 301

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 9/273 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F V+  +GSFT AA+QL  S+  +S++IS LE +  + L  R  R L+LT  G+ 
Sbjct: 2   DDLAAFAVLIEAGSFTLAAQQLGCSKGQLSKRISALEAQFSVVLLQRTTRRLSLTAAGAA 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  ++E  +  L       +G +R+   + LG+   +G L EF   YP++QI+
Sbjct: 62  LLPQAQALLVQVERARQALARLKDDMAGPVRLTVPVSLGETFFEGLLLEFSRQYPEVQIE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+N   D++ D  D AIR  +      L+ R L+  H    A+P YL+   EP + ++
Sbjct: 122 LELNNNYRDLTRDGFDLAIR-SEVANDQRLVARPLLAWHEMTCASPAYLEQYGEPQTPRD 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H  +    L         WL      +   R+S     N Y  + +  ++G+GIA L
Sbjct: 181 LAEHRCL----LNSHYSGREEWLYHQQHELLRVRVSGPFASNHYNLLKKAALVGAGIARL 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           P Y+++    +  L  ++ D  T S  +Y  +P
Sbjct: 237 PSYLLQAELADGRLRGLLRDYQTRSMPMYLVHP 269


>gi|149377206|ref|ZP_01894954.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
 gi|149358505|gb|EDM46979.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
          Length = 296

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 138/287 (48%), Gaps = 7/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  V    SF  A+E + +S++++SR +  LE+ +G++L +R  R L+LT +G   
Sbjct: 6   EMQTFCTVVDESSFVAASEAMGMSKAAVSRYVGELESRLGVRLLHRTTRRLSLTAEGEVF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +E  + EL   S    G LRI   +  G   L     +F   YP++++ +
Sbjct: 66  YVRCRELLAGVEEAEAELTSRSGVAKGVLRINAPVSFGIRHLAPLWGQFHSEYPNVELNI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +DI  +  D AIR+   +++S+L+ R+L T  +   A+P YL     P    +L
Sbjct: 126 DLSDRIVDIVEEGFDLAIRIAS-LRNSTLVSRRLTTTRLVVCASPEYLSAHGTPEHPGDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H +I + +L       F+     D P+       +  N+  +     V G G+   P 
Sbjct: 185 IHHKIIAYSNLATGNDWHFD---GPDGPLSTRIRPWMHANNGETCCAAAVAGQGVIHQPS 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V+D+     LV +M D  +    VY  YP     T K++A  +F+
Sbjct: 242 FLVQDDLDAGRLVELMPDYRSDELGVYAVYPTRKFVTPKVRALVDFL 288


>gi|312959680|ref|ZP_07774197.1| regulatory protein [Pseudomonas fluorescens WH6]
 gi|311286397|gb|EFQ64961.1| regulatory protein [Pseudomonas fluorescens WH6]
          Length = 301

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 139/296 (46%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + V+  V  +GS T AA    +S + +   +  LE  +G+ L  R  R  +LTE G 
Sbjct: 4   FQAMSVYVKVVETGSMTAAAYACGMSTTMVGNHLRALEQRLGVSLLKRTTRKQSLTEFGG 63

Query: 65  KLHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + ++   EV   + ++ Q+  Q  S  P G LRI      G   L   L EF   YP I+
Sbjct: 64  QYYQRCLEVLGLVADSEQLAEQAHSDVPKGTLRITAPPAFGTERLAPALSEFSRRYPQIK 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++L N+ +D+     D AIRL + ++ SSLI R +    +   A+P YL     P + 
Sbjct: 124 LYVVLGNERMDLVDSGFDAAIRLGE-LEPSSLIARPMQDYTITLCASPEYLARHGTPQTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSG 240
           ++L +H+ + F         D + L  +    GE   P    L +NS  ++ Q  V G G
Sbjct: 183 EDLQQHDCLAFAYPSTDDWRDADKLWRMTDAAGEVEIPVSGSLTINSSQALRQVAVQGMG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I +LPD +V+    +  LV ++     PS  ++  Y +      KL+AF +F+  K
Sbjct: 243 IVMLPDALVQPDLQSGKLVALLTHYQLPSRPMHLLYGQDRYRLPKLRAFVDFVMEK 298


>gi|304397953|ref|ZP_07379829.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304354664|gb|EFM19035.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 301

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 132/281 (46%), Gaps = 24/281 (8%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V  +GSF+ AA +L  S S  S+ +S LE ++G++L  R  R L+ T+ G   + 
Sbjct: 8   RMFVTVLETGSFSAAALRLGTSSSQASKLVSKLEQQLGVQLLKRSTRALSPTDVGRSYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    E     ++ES+  P+G+L+I+     G  +L   L  F   YP I++ +  
Sbjct: 68  RVKNLLDAFEALDASVRESATTPTGRLKISAPGSFGTAVLSQVLVAFARRYPLIELDVSF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ++I  +  D AIR+   +  SSL+ RKL  +H+   A+P YL+    P   + + +
Sbjct: 128 SDRAVNIVDEGFDMAIRIGT-LSDSSLVARKLSEVHVRIAASPVYLEQFGTPQHWRNMAQ 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYL------SIMQYCVLG 238
           H          +C+ D N+      P     G   I  + V   L      + +Q  + G
Sbjct: 187 H----------QCIIDTNFRDPRHWPFTSGDGSSEIVTVPVRGRLRFANTEACLQAAIAG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEA 276
            GIA LP +I         +VR++E+  TP   ++  YP A
Sbjct: 237 LGIARLPGFIAAPALQRGEIVRLLENFETPPLGLFAVYPPA 277


>gi|269960324|ref|ZP_06174698.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834935|gb|EEZ89020.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 316

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 150/296 (50%), Gaps = 18/296 (6%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DK+R   VF  V   GSF  AAE L+LS+++IS+ I+ LE+ +   L  R  R L +T+ 
Sbjct: 2   DKIRALTVFRRVVELGSFVAAAEDLNLSKAAISKNINELESYLKSPLINRTTRNLHITDN 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L      + ESS    G L+I+  + LG   L   + EF+ L+P++
Sbjct: 62  GQLYYQQVCQVLDALNNADRSVIESSHTLKGTLKISMPMSLGLIELNPIICEFMKLHPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I++++ ++ ID+     D AIR    + +SSL  RKL+ I     A+P YL+  +   S
Sbjct: 122 SIEVVMSDEHIDLIEQGVDIAIRGGGELGNSSLRSRKLLDIRRVLCASPQYLEESQPFKS 181

Query: 183 IQELDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +++  H L+++           ++ + +  VD P      S   VNS L++ Q    G 
Sbjct: 182 PRDVINHRLLSYSLSSTSRRWTFQNGSEVLEVDLP-----ASVYTVNSGLALTQAACAGH 236

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
           G+ALLPD+ V+  P L       ITP +      +Y  YP   + + KL+AF +++
Sbjct: 237 GVALLPDFFVE--PQLASGELVEITPEWQMEKHALYIVYPYHKEQSQKLRAFIDYV 290


>gi|269104645|ref|ZP_06157341.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161285|gb|EEZ39782.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 299

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 135/293 (46%), Gaps = 13/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  V +S SF+ AA  L  S S +S++++ LE  +G++L  R  R L+LT +G 
Sbjct: 7   FDGIIIFVQVVKSESFSAAAHLLGHSSSHVSKEVNKLENRLGVRLLNRTTRSLSLTPEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++    E     +      P G LRI   I      LQ  L E+   YP++ +
Sbjct: 67  AYFEQCIQLIQGAEDAVSLITHHEASPRGTLRINCPIGFSHQHLQPILVEYAKRYPNVIL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +K ID+  D  D AIR    +  SSLI + +    ++  A+P YL+    P    
Sbjct: 127 DLDLTDKRIDVIADGYDLAIRAAAQLDESSLICKAIYKSCIYTVASPDYLERKGRPYHPF 186

Query: 185 ELDKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           EL KH+ I + +L      + ++  N L  VD     PR+     N  L++    + G G
Sbjct: 187 ELTKHDCICYSNLKSPYRWEYIDKSNQLINVDV---RPRVKTNDGNIELAMT---LAGQG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP++ + DN     L  + ED+      VY  YP     + K++ F + I
Sbjct: 241 ICRLPEFYIADNLKTGQLEILFEDLPETEVNVYLLYPSRKHLSPKVRCFIDLI 293


>gi|218676611|ref|YP_002395430.1| Transcriptional regulators, LysR family [Vibrio splendidus LGP32]
 gi|218324879|emb|CAV26637.1| Transcriptional regulators, LysR family [Vibrio splendidus LGP32]
          Length = 300

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 153/303 (50%), Gaps = 12/303 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V   GSFTHAAE L++++S++SR++  LE  +G++L  R  R L LT +
Sbjct: 1   MDLNAVTVFTQVVDCGSFTHAAEALNMTKSTVSRKLDELEQHLGVRLITRSTRSLVLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++ + ++   +   ++E+  +     G L +   ++LG  +L   +  FL  +P++
Sbjct: 61  GERFYQSSMQMQEIMNQAELEVSANQDLIRGPLNVVLPVELGHQVLAQYIHSFLKEHPNV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L N+++DI  +  D   ++ + +  SSL+ R L T      A+P YL+   E  +
Sbjct: 121 TMNLELTNREVDIIAEGIDLYAQIGELV-DSSLVSRYLTTSKRTLVASPEYLEQFGEIKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISC-LQVNSYLSIMQYCVLG 238
             +L         +++ K      W   ++   GE     + C L+VN+  + +  CV G
Sbjct: 180 PSDLKSP--FRMVEVVNKAARLPKWHLQLE--AGESILIDLPCQLRVNTITACLTACVDG 235

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+A+LP++I +++     L+R++ +   P  +V   Y +      + K F +++    +
Sbjct: 236 LGLAVLPEFICREHFKTGKLIRLLPEYEMPEVSVSLVYADRQLMPKRKKVFIDYLLTAFQ 295

Query: 296 DWK 298
           + K
Sbjct: 296 NRK 298


>gi|212637173|ref|YP_002313698.1| regulatory protein LysR:LysR substrate-binding [Shewanella
           piezotolerans WP3]
 gi|212558657|gb|ACJ31111.1| Regulatory protein, LysR:LysR, substrate-binding [Shewanella
           piezotolerans WP3]
          Length = 303

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 143/294 (48%), Gaps = 17/294 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +  + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAQGFSQAARETGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +  + +  ++E  +  ++ +    SG LR+A  +   Q L+      F+ LYP+++
Sbjct: 63  ALFFQHCTSISDEIEAAKATIENTHNDVSGSLRVAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPSYLKTHGTPANP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           QEL  H+ I  G      + P        +    R +        +VNS + + Q  +  
Sbjct: 182 QELATHSGILLGTSRSAPIWPLGKGTRKTMVNFKRKV--------RVNSAVMVKQLVMDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GIA+L + + K+   + +LV I+++    +F VY  Y    +    +  F +F
Sbjct: 234 FGIAMLSNSVCKNELASGSLVPILQEWPMEAFKVYGVYSSRRQLATNISVFLDF 287


>gi|296162833|ref|ZP_06845615.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295886929|gb|EFG66765.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 309

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 138/304 (45%), Gaps = 22/304 (7%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +  SGSF  A   L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERMLNGMGVLTAIVDSGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT++G + +     +   LE       + +    G+LR+       + +L   L  F+ 
Sbjct: 61  VLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFID 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+Q++LI  ++  D+  D  D AIR   P   S+LI RKL+   +   AAP YLK  
Sbjct: 121 RHPDLQLELITRDQLGDMVADGFDLAIRFGDP-PVSTLIARKLLDTRILTVAAPSYLKKH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYL 229
             P++  +L+  KH  I F D  P     FNW     R      P G      L VN   
Sbjct: 180 GHPVNPADLESGKHVCIKFRD--PLTGYPFNWEFHRGRKKIVVTPQGR-----LTVNDVG 232

Query: 230 SIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++   C  G G+A + +   +    +  LV +  D     + +Y  YP       K++AF
Sbjct: 233 TLHSACAAGQGVAQILELGAESLMASGKLVALFPDWSDEVYPLYALYPSRHHPPAKVRAF 292

Query: 287 RNFI 290
             FI
Sbjct: 293 FEFI 296


>gi|189352503|ref|YP_001948130.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189336525|dbj|BAG45594.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 300

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 136/277 (49%), Gaps = 7/277 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D++ L  F  VAR  +FT AA Q+ +SQS++SR ++GLE  +G++L  R  R ++LT
Sbjct: 1   MKEDFNDLVGFMTVARERNFTRAAAQMGVSQSALSRTVAGLERRMGLQLLTRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +  + ++E     L+  + +PSG +RI TT    ++ +   L+  L  YP
Sbjct: 61  EAGDRLLSAIAPRFEEIEAEVDSLRAMTNQPSGTVRITTTDYAAKSYVWPRLQSLLRQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I+L+ D    DI  D  D  +RL   +    +  R    + M    +P YL++    
Sbjct: 121 ELKIELVNDYGLSDIVADRYDIGVRLGDQVAKDMVAVRIAPDMTMTVVGSPSYLQSKPHA 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + Q+L  HN I     +P       W     R   + R+   L  N+   +++  + G 
Sbjct: 181 RTPQDLTLHNCINL--RLPTRESLLPWELRKGRRELKVRVEGQLTFNNVYQMVEAALGGF 238

Query: 240 GIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273
           G+A +P  +V+D     R   ++ED   P+F  +  Y
Sbjct: 239 GLAYVPKDLVEDKVRAGRLCWVLEDWY-PTFVGHHAY 274


>gi|86358885|ref|YP_470777.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282987|gb|ABC92050.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 341

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 134/276 (48%), Gaps = 17/276 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   A +G F+ AAE+LHL++S++S+ I+ LE  +G++LF R  R  +LTE+G   +  
Sbjct: 51  IFVQTAEAGGFSAAAERLHLTRSAVSKTIARLEQRLGVRLFNRTTRSQSLTEEGRFFYER 110

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 ++   + +L+       G+LR++  +  G++     L   L  +PD+++     
Sbjct: 111 CLRAIEEIRIGEAQLESGRRAVRGRLRVSMPVLFGRHCAAPILTRLLDDHPDLELDFSFS 170

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  D  D A+R      +  L+ R +    M   A+P YL+    P +  EL  H
Sbjct: 171 DRVVDLLEDGFDLAVRNGPLKDNPDLMARAIARQSMTVCASPTYLEKYGVPQTFDELAHH 230

Query: 190 NLITF--GDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243
             I +  GD       D  W+      +G PR     S L+++   SI    V G G+A 
Sbjct: 231 QGIIYRRGD------NDRAWI--FPSAVGPPREVLPKSRLRLDDLASIADAAVEGRGLAW 282

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           L  ++V+D   +  LVR++ DV +  F  Y  +P +
Sbjct: 283 LTCWLVRDRVLSGELVRVLTDVPSNIFEAYAVWPRS 318


>gi|149911198|ref|ZP_01899822.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149805725|gb|EDM65723.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 296

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 147/295 (49%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  WD  ++ Y VA  GS + A + L+++ +++ R+I+ LET + +KLF+RH RG  LT+
Sbjct: 3   NISWDDYKIAYQVAIDGSLSQAGKSLNINHATVLRRINQLETALEVKLFFRHQRGYKLTD 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L     E+  +    + +LQ    K SG+LRI+T       L    LK F  +YP 
Sbjct: 63  AGAILLAELPELIARFSKLEHQLQNVESKISGELRISTISSYSSQLAPA-LKAFRDIYPA 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+++  +  + +    A  ++R+      + LI ++L     + YA+  Y+K   +P 
Sbjct: 122 IRIKVLSTDDIVPLESGAAHVSLRVGPKPNGADLIVKELTRFKTNYYASKEYVKEFGKPS 181

Query: 182 SIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +   L+ H  +     +P   +    ++  V   I + RI   Q N +  + Q  + G G
Sbjct: 182 TDSSLNDHYWV-----LPTAEKYRIPFVRHVVDNIDQDRI-VFQSNHFPDVNQAVIEGMG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  + ++  K  P+LV+I  +       ++F Y +  K++ ++K F  + FL AR
Sbjct: 236 IGPMGEHQAKLYPSLVKIPLNSPKSEEAMWFVYHKDAKHSARVKCF--YEFLHAR 288


>gi|148260787|ref|YP_001234914.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146402468|gb|ABQ30995.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
          Length = 295

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 118/261 (45%), Gaps = 8/261 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD++R+F  VAR G    AA QL L+ +++ RQ+S LE E+G KLF RH  G TLT  
Sbjct: 1   MNWDRIRIFLAVARHGQILGAARQLRLNHATVGRQLSALEEELGAKLFERHTGGCTLTGA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L                 L  ++   +G +R+     LG   L   L      +P++
Sbjct: 61  GEALLLAAERAESDFLRVGTALAGTAEAVAGVVRVGAPDGLGNYFLARELGALAARHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD  I L +P Q   L+ RKL    +  YAA  YL     P+ 
Sbjct: 121 TIQLVPLPRTFSLSRREADLVITLERPKQ-GRLVVRKLTDYTLSVYAAASYLDR-HGPIR 178

Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            QE L  H  +T  + +       ++ AT+ R I      C    S +  M+    G GI
Sbjct: 179 RQEDLAGHLFVTHVEELAYS-RALDYAATLGR-IMRRHFEC---GSVVGQMEAVRAGHGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDV 262
            +L DY     P L R++ D+
Sbjct: 234 GILHDYAAIGFPELRRLVPDL 254


>gi|222147639|ref|YP_002548596.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221734627|gb|ACM35590.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 293

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 142/295 (48%), Gaps = 21/295 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  +AR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAIARTGQILAASKRLGLNHATLSRRLTALEDALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +  K +G +RI      G   L   L   +  +P++
Sbjct: 61  GEVFLASAERMETEMLEAQARLGRTDAKVAGTVRIGAPDGFGVFFLASRLGGLIERHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD A+ L +P Q   L+   L    +  YA+  Y++    P +
Sbjct: 121 KIQLVPVPRSFSLSQREADIAVTLERPDQ-GRLVSAHLTDYSLALYASRQYIERHGLPET 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDF------NWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           ++ L  H+ I +  DLI     +F      NW A+             +++S +   +  
Sbjct: 180 VEALKDHHRIGYVEDLIFTPSLNFTGEIMRNWNAS------------FEISSAIGQTEAV 227

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G+GI +L  YI + + +LVRI+ D IT     +  Y E+L++  +++   +++
Sbjct: 228 LAGAGIGILHSYIARQHRDLVRILPD-ITLHRAYWTTYHESLRDLARIRTVVDYL 281


>gi|239834604|ref|ZP_04682932.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239822667|gb|EEQ94236.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 304

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 139/289 (48%), Gaps = 8/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  R+F  V    SFT AA+ L + +SS+S  +  LE  +G +L +R  R ++ T+ G+ 
Sbjct: 5   DLFRIFARVVECSSFTRAADTLGVPRSSVSAAVLELEGRLGARLLHRTTRSVSTTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   +E  +  L  ++  PSG LRI     +G+ ++   L EFL  YP+I I 
Sbjct: 65  FYERCLSLIADMEEAE-NLFRNTATPSGTLRIDVPGRIGRLIIAPALPEFLDAYPEIDIH 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+  P+  S LI R L  + +   A+P YL+    P +  +
Sbjct: 124 LGVTDRAVNLVEESVDCVLRV-GPLTDSGLIARSLGELPLINVASPAYLERYGIPETPHD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  I +       +E + W  A   R I  P    + VNS  + +  C+ G G+  +
Sbjct: 183 LSAHWAINYASPSSGRVEPWEWSEAGATRSI--PVRGRVTVNSAEAYIACCLAGLGLIQI 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y V+   +   L+ +M D+      + F Y      + +L+ F +++
Sbjct: 241 PAYDVRRHLEAGELIEVMADMRAAPMRMTFLYSHRQHLSRRLQVFADWL 289


>gi|160895812|ref|YP_001561394.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361396|gb|ABX33009.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 307

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 132/272 (48%), Gaps = 13/272 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A +GSF  AAE+L L++S++ + ++ LE  +G +LF R  R L LTE G   +  
Sbjct: 14  AFVASAEAGSFAQAAERLGLTRSAVGKAVARLEERLGARLFVRTTRSLGLTEDGQMFYER 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            ++    L+  +  L+    +  G+LRI+  +  G++ +   L E   L+P ++I+    
Sbjct: 74  CAQALEDLDAARHMLEAGRREVVGRLRISAPVVFGRHHVAPLLLELAQLHPRLRIEASFT 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D + D  D AIR  +   S  L+ R+L    M   A+P YL+    P S+ +L  H
Sbjct: 134 DRQLDFADDGIDLAIRSGELPDSDWLVARRLGMQTMVLCASPAYLQAHGAPRSVADLAGH 193

Query: 190 NLITF---GDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
             I +   G   P       WLA  D  +  P +   L  +   +I    + G+G+A +P
Sbjct: 194 RCIAYMRSGRAAPW------WLAGEDGSLAAPVLEPALGFDDIETIATATLQGAGLAHMP 247

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            + V+   D+  LVR++ DV      ++  +P
Sbjct: 248 LWRVRSALDSGALVRLLPDVPAARIPLHVLWP 279


>gi|313202348|ref|YP_004041006.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441664|gb|ADQ85770.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 301

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 147/297 (49%), Gaps = 18/297 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  VA+  SF+ AA +L +S+S++S+ ++ LET +G +L  R  R L+LTE G
Sbjct: 3   DLNLMAIFAHVAQEQSFSTAARKLGMSRSAVSKAVAKLETALGARLLNRSTRHLSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +    + +  + E     ++  + KPSG LR+A ++  G   +   + +FL  YP+++
Sbjct: 63  AGMLEHCARIVTESERASQVVENLNSKPSGTLRVAASVAFGTLHVAPAMADFLQQYPEVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + + ++ ID+  +  D  I++ +    S+L+ RKL  +       P Y +    P S 
Sbjct: 123 LDITITDRAIDMVEEGYDVIIKVAQE-PPSALVARKLAPVRRQVCGTPAYFRQHGLPASP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  HN +   D I    + +   +  D  I  P    +++N   ++ Q  + G G+AL
Sbjct: 182 MALTAHNCL---DYIHSGDKGYWRFSGPDGEIAVPVSGRVRINDDEALSQVVLGGFGLAL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP +IV +   + +L  ++ D I     VY  Y   L N         F+ LKAR +
Sbjct: 239 LPTFIVGNHLQSGHLQSVLSDYIPVEQHVYAMY---LPN--------RFLPLKARTF 284


>gi|294141696|ref|YP_003557674.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328165|dbj|BAJ02896.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 303

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 16/294 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  V  +GS + A+    +  SSISRQ+  LE ++GI+L  R+ R + LTE G   
Sbjct: 6   RLHYFNCVVETGSISKASRVFDIQPSSISRQLMALEKDLGIRLLNRNTRNIGLTEAGLTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++ +  +  +L+     + E    P G L+++ T+  G++ +   +  F+  YP++ I+L
Sbjct: 66  YQYSQRIVSELDEAHRAVNELQKNPKGHLKVSMTVGFGESCVLPLISAFIRQYPEVNIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  + ID+  +  D AIR    +  S+LI RKL   +    ++P Y+    +PLS  +L
Sbjct: 126 ELTERVIDMVEENVDIAIR-SGHLPDSNLIARKLTDNNFLICSSPQYITQHGQPLSANDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            + + I +G    +      WL     P    +++    L VNS     Q  +  +G AL
Sbjct: 185 HEFDCIKYGYAGWR-----EWLVMTSAPHAFKKLTISEGLTVNSVNGQKQLMLNDAGFAL 239

Query: 244 LPDYIVKD---NPNLVRIM-EDVITPSF---TVYFCYPEALKNTGKLKAFRNFI 290
           +P + VK+   N +LV+I+ +D  +P     + Y  Y +    + K++ F +FI
Sbjct: 240 IPLWAVKEELKNGSLVQILAQDTFSPCAPLSSTYALYQKRELISPKIRVFLDFI 293


>gi|260776407|ref|ZP_05885302.1| putative transcriptional regulator LysR family [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607630|gb|EEX33895.1| putative transcriptional regulator LysR family [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 266

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 9/245 (3%)

Query: 32  SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91
           ++I+R+I  LE  + ++L  RHAR L+LTE G + +   S + ++L +   E+ +     
Sbjct: 5   ATITRRIQALEEALNLRLLNRHARKLSLTEAGERFYNECSPLLNRLTSAAEEITDECRGA 64

Query: 92  SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151
           +GK+RI+   +L +  +   L EF+  YPDI I+L   N    +     D   R+  P +
Sbjct: 65  AGKIRISAPSNLTKRRMMPMLNEFMKHYPDINIELTTSNHADQLDPTEWDVIFRV-GPQR 123

Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211
            SSLI RK+ ++     A+P YLKN   P   ++L  H+L+    L+   + + N    V
Sbjct: 124 DSSLIARKISSVEDILVASPEYLKNNPTPKHAEDLHNHSLLKGAPLLKWQLTNSNGETVV 183

Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFT 268
           +   G  + S L V     +   C  G GI L+PD ++K   ++ +L R++ED       
Sbjct: 184 NNDKGRFQASTLDV-----VRSACSNGLGITLMPDAMLKKYIEDGSLTRVLEDWSANPRD 238

Query: 269 VYFCY 273
           +Y  Y
Sbjct: 239 IYMLY 243


>gi|261379509|ref|ZP_05984082.1| transcriptional regulator, LysR family [Neisseria subflava NJ9703]
 gi|284797972|gb|EFC53319.1| transcriptional regulator, LysR family [Neisseria subflava NJ9703]
          Length = 296

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 139/290 (47%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AA+QL +S +  S+ +S LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAADQLGISTAMASKHVSHLENTIQAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +      +   L E+   YP + + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGTDTPQGMLRVTMPLWFAGGNMSAWLAEYRQRYPKVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ ID+  +  D A+R+ K   S SLI + L  I     AAP YL     P + + + 
Sbjct: 127 LDNRHIDLIAEGFDLALRVSK-TPSPSLIVKPLAKIEFVLLAAPDYLARHGTPDTPESVM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I     +P      NW  T  R  GE  I      ++ ++ L I +    G+GI  
Sbjct: 186 QHQAI-----LPSYTSQQNWEIT-HRITGEKAILHLSPVIRSDNTLMIRELIKAGAGIGY 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P + V+       L++++ D    +  +   Y +    + K+++F +F+
Sbjct: 240 QPLWAVQQELKEGTLIQLLPDYTIWTDQLNATYVDRAFLSAKVRSFIDFL 289


>gi|167586820|ref|ZP_02379208.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 300

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 129/273 (47%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFVAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 V + ++  +  +    VK SG LRI+     G+  +   + EF   +PD+ + L
Sbjct: 66  LEDCQRVINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ EL
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWSFLEDGKVVSIRVSGTMECSDGAVLHEWCLAGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + V D+     LV +++    P   ++  +P+
Sbjct: 242 WWEVGDDVAAGRLVSVLDAFAAPPIGIHAVFPQ 274


>gi|254254764|ref|ZP_04948081.1| regulatory protein LysR [Burkholderia dolosa AUO158]
 gi|124899409|gb|EAY71252.1| regulatory protein LysR [Burkholderia dolosa AUO158]
          Length = 359

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 141/296 (47%), Gaps = 11/296 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 53  TFLAVVTEGSFARAADRLGVGRSSVSRHVQKLEDRLDARLFQRTTRSMSLTREGELFYEN 112

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LRI +T   G+ ++   L++F   YPDI ++L+L
Sbjct: 113 CRPGIEHLAQALEDMRELRSGPPSGHLRIGSTPGFGRKIIAPLLRDFHAQYPDITLELLL 172

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++  D S D  D A R  + ++ S+++ R+L+ + M   A+P Y +    P  + EL +
Sbjct: 173 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAQRYGLPRHVDELAQ 231

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDY 247
           H  I       +  E   W   +D    + +++     + + ++   VL G GIA LP Y
Sbjct: 232 HRCINLRTASGRVTE---WEFKIDGLAQQRQLAAHHTFNDMDLVVRAVLDGLGIAQLPAY 288

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298
            V D   +  LV  +          Y CY        +++ F +++    +ARD +
Sbjct: 289 QVCDLLADGKLVSCLGQYAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTRARDLQ 344


>gi|288961787|ref|YP_003452097.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914067|dbj|BAI75553.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 299

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 139/292 (47%), Gaps = 23/292 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG- 63
           WD +  F  VA SGSF+ AAE+L +S S +SR ++ LE  +  +LFYR  R ++LTE G 
Sbjct: 4   WDGIDEFVAVAESGSFSRAAERLRVSSSHVSRAVARLEDRLQARLFYRTTRKVSLTESGR 63

Query: 64  ------SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
                  +L     + +  +   Q    +S VK  G LR+      G+  +   + + + 
Sbjct: 64  AFLDRCQRLAEQRDDAFLAVGALQGG-GDSEVK--GLLRMTCATAYGEQFVMPLINDLME 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P + I++ L N+ +D+  +  D AIRL + +  SSL+  ++    MH  AAP YL+  
Sbjct: 121 CHPQLSIEVELTNRQLDLVQEGYDLAIRLGR-LSESSLVATRIAPRAMHLCAAPAYLERH 179

Query: 178 REPLSIQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             P S+  L  H  LI   D     + D N    + RP G  R      NS  S++   +
Sbjct: 180 GVPDSLASLATHQCLIGTSD---HWLFDDNGTDWLFRPRGRWR-----CNSGFSVLDAAL 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            G G+  LPDY V+       LV +++    P+  V+  YP+      K+ A
Sbjct: 232 RGFGLCQLPDYYVRGPVAEGRLVSLLDRHQPPNTAVWAVYPQKRHVPAKVHA 283


>gi|270264875|ref|ZP_06193139.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041173|gb|EFA14273.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 306

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 144/278 (51%), Gaps = 16/278 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F ++   GSF+ AAE   ++ S +S++I  LE  +G +L YR  R LTLTE G  
Sbjct: 9   NDLILFALIVDCGSFSKAAETAGVTSSVVSKRIGRLEKSLGARLLYRTTRSLTLTESGLA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++   ++  K++     + E S + +G +R++     G+ LL  ++ EF   +P+++++
Sbjct: 69  LYQQAKDIGMKVQDALYAVSEKSEELTGTVRMSVPTISGELLLSESVAEFCAQHPNLKVE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+  +  D AIR    +  SSLI R ++        +P YL+   +P S  +
Sbjct: 129 MRLENRFVDLVEEGVDLAIR-TGTLPDSSLIARPILDSRWVIVCSPGYLERHPQPQSAAD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L +HN +T+     +   D NWL  + +P G   I  LQVN  LS      I +  + G 
Sbjct: 188 LLEHNCLTY--TYQESGTD-NWL--MKQPGGND-IYELQVNGNLSANNARAIRKAVIGGY 241

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA++P  +V +   +  LV I+         VY  YP
Sbjct: 242 GIAMVPRCMVYEDLQDGKLVEILAGHCAKVLGVYAVYP 279


>gi|254473674|ref|ZP_05087070.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211957386|gb|EEA92590.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 298

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 15/291 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD + +F  VA +GS + AA+QL+ SQ +I RQ+  +E E+G+ LFYRH RGL LTE G 
Sbjct: 10  WDLIGIFVAVAETGSLSAAAKQLNQSQPTIGRQVKAIEAELGVSLFYRHQRGLGLTEDGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            L  +           Q  L     K S   G +R+  +  +   ++   + EF   YP+
Sbjct: 70  AL--LPHAKAMHAAAAQFLLHAEERKQSGFAGSVRVTASQVISNYVMPKLIAEFRQTYPE 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L+  +   ++    AD A+R+  P Q   ++ +K+    +  +A+  +L+    P 
Sbjct: 128 IQIDLVPSDDAQNLLFQEADIAVRMFTPTQ-LDIVAKKIGETPLGLFASKAFLERVGMPK 186

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + ++L   + I +   DLI + M++      VDR     R  C    +Y  +++    G 
Sbjct: 187 TREDLFALDWIGYDRSDLILRGMQEAG--LKVDRNFFSVR--CDDRVTYWELVRA---GC 239

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ L    I  ++ +LVR+  D   P+  V+   P  LK   ++K   +F+
Sbjct: 240 GVGLGQIGIGVEDDSLVRLELDDPLPALPVWLASPHTLKQIPRIKLLFDFL 290


>gi|158421907|ref|YP_001523199.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
 gi|158328796|dbj|BAF86281.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
          Length = 319

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 129/263 (49%), Gaps = 16/263 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +G F+ AA  LHL+ S++S+ I+ LE  +G +L  R+ R L LT +G+  
Sbjct: 11  EMEVFVRVVDAGGFSAAARALHLTPSAVSKLITRLELRLGARLINRNTRRLQLTAEGAAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   LE  +  +  S V PSG+LR+   +  G   L   L EFL  YP + + +
Sbjct: 71  YERAVTLLADLEEAERSVARSEV-PSGRLRVNANVPFGTLYLLPALPEFLARYPAVTLDV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +K +D+  +  D A+R   P++SS L+ RKL    M   A+P YL     P    +L
Sbjct: 130 VLTDKVVDLMEERMDVAVRA-GPLKSSQLVARKLGDTRMVIVASPEYLARHGTPRGPADL 188

Query: 187 DKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           D H  I F  L      P   E+    ATV RP G      +  +   ++    + G+GI
Sbjct: 189 DAHRCIGFCYLRQVEGWPLKAEEGRE-ATVFRPQGH-----VLASDGETLRHMVLAGTGI 242

Query: 242 ALLPDYIVKDN---PNLVRIMED 261
           A L  + V  +     LV ++ED
Sbjct: 243 ARLGTFHVAADLLAGRLVPLLED 265


>gi|115360820|ref|YP_777957.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286148|gb|ABI91623.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 294

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 140/295 (47%), Gaps = 16/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVSTVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLAAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GALEDSTLIARPLGAWKMIACASPAYLKRQGTPDT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
             +L  H  + +G           W   +D   G  R   +Q     N+   +    + G
Sbjct: 180 PADLAAHTCLLYGR-----ERRVGWEFRID---GAARTFDVQGPLVANNGEVVRDAAIAG 231

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLP +IV    D+  LV +++       T+   +P+  +    L+ F  F+
Sbjct: 232 LGIALLPHFIVGAALDSGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFL 286


>gi|291037290|ref|ZP_06568254.1| transcriptional regulator [Gluconacetobacter xylinus NBRC 3288]
          Length = 298

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 119/247 (48%), Gaps = 9/247 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   +A +GSFT AAE L L +S++SR+++ LE  +   LF R  R L+LT++G +
Sbjct: 6   DDLALLVTIAEAGSFTAAAEALGLPKSTVSRRLADLELLLRTSLFRRSTRALSLTDEGRR 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++ +              + E     +G++ + TT  LGQ L+  +L      YPD+++ 
Sbjct: 66  IYEMAQPSILAAGNAARAIAEREQLVAGRVSLTTTAALGQYLIAPHLVRLTADYPDLKVD 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  + I+I  +  D A+R+   +  S LI R+L  +     A+P YL     PLS  +
Sbjct: 126 LQLTERRINIIGESVDLAVRMGN-LGDSDLIARRLCMVRRLLVASPAYLAQAGTPLSPLD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN I     +     D  W   +   I           + L   Q   LG GIA+LP
Sbjct: 185 LAAHNAIVTSAGLDTWRFDGGWECVMRWNIA--------AGNMLVAHQLARLGHGIAMLP 236

Query: 246 DYIVKDN 252
           D+++ ++
Sbjct: 237 DFMIAND 243


>gi|157377100|ref|YP_001475700.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319474|gb|ABV38572.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 303

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 146/296 (49%), Gaps = 21/296 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA ++ + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++  + +  ++E  +  ++ +    SG LRIA  +   Q ++      F+ LYP+++
Sbjct: 63  ALFYQHCTSISDEIEAAKATIENTHNDVSGSLRIAIPVSFSQEIIANLCSSFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + ++ +  +  D AI+   P+QSS L+ R L        A+P YLKN   P + 
Sbjct: 123 LDVQFTDSEVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKNNGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-------QVNSYLSIMQYCV 236
           Q+L  H+ I  G      +    W      P+G+     +       +VNS + + Q   
Sbjct: 182 QDLMNHSGILLGTSRSAPI----W------PLGKGARKTMVNFKRKVRVNSAVMVKQLVQ 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              GIA+L + + K+   +  LV I+++    +F VY  Y    +    +  F +F
Sbjct: 232 DDFGIAMLSNSVCKNELASGALVPILQEWPIEAFKVYGVYSSRRQLATNISVFLDF 287


>gi|254300213|ref|ZP_04967659.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157810202|gb|EDO87372.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 299

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPTVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGAPKRPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++    G GIA
Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           LLP +   +      LVR++ D   P   +Y  Y
Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270


>gi|330831408|ref|YP_004394360.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328806544|gb|AEB51743.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 300

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 17/297 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +   +   +   GSFT AA +L ++++ +SR+I+ LE  +G++L YR  R LTLTE+
Sbjct: 1   MDLNAALILVRIVDKGSFTGAARELGMTKAMVSRRIAELEQRLGVRLLYRSTRQLTLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K +   S+    L   ++ L  S  + +G L++A  I+ GQ ++   + +FL  YP +
Sbjct: 61  GEKYYLHCSKAVDALTEAELMLSASQQEVTGTLKLAVPIETGQLVVGRLVAKFLQAYPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL- 181
           Q++L L N+ +D   +  D  +R+   +  S+L  R+L +      A+P YL   R P+ 
Sbjct: 121 QVELELTNRVVDPISEGLDALVRI-GDMSDSNLAARRLWSTGRLLCASPDYL--ARSPVI 177

Query: 182 -SIQELDKHNLITF--GDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
              ++L  H  +T   G L    C E       VD P      S  +VN+     +    
Sbjct: 178 ERPEDLANHERVTVSSGFLASHWCFELDGREVLVDPP------SRFRVNNITCAREAAKA 231

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+A LP  + +D   +  LV ++ +   P   +Y  +PE      KL+AF +F+ 
Sbjct: 232 GLGLASLPAMLCQDELASGELVILLPEWQQPRVPIYLLFPERQLMPRKLRAFIDFMI 288


>gi|330890318|gb|EGH22979.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 303

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 9/304 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L +R  R L LT
Sbjct: 1   MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLHRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H         L     +L     +P G+LRIA   D         + +FL  YP
Sbjct: 61  QAGEDFHERCVGAVDGLMDAAEQLVSGREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDSMVASPAYIAAHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P S+Q L  H  ++     P     +  L   D  + E +++     N+  ++ +  + G
Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K R
Sbjct: 237 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 296

Query: 296 DWKF 299
           D  F
Sbjct: 297 DKAF 300


>gi|239992908|ref|ZP_04713432.1| putative transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 292

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 133/284 (46%), Gaps = 13/284 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  G+FT AA +L  S + ISR+++ LE ++G+KL  R  R ++LTE G++  +  
Sbjct: 10  FCAVADVGNFTGAANKLDTSVAQISRKVASLEKQLGVKLLQRTTRSVSLTEAGTQYFQQA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 LE  Q+ +      P G +++   +  G+  +   L  F+  Y  I +Q    N
Sbjct: 70  MPALKALEDAQLAVSALQASPQGLIKLTAPVAFGEAFIAPLLNTFMQKYAGISVQCTFSN 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +DI     D AIR+ K ++ S+L+ +KL T H+    +  Y K   +P SI+EL +H+
Sbjct: 130 EKLDIVELGLDLAIRIGK-LEDSTLVAKKLATRHLFVCGSRDYFKEQGQPKSIEELKEHS 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           L+              W   +D  I   P    ++ NS  ++    V G GIA LP + V
Sbjct: 189 LLVGSQPY--------WRLLIDNKIQSIPVQGRVRYNSGNALCSAAVAGLGIAQLPGFYV 240

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    +  L+ +  +       ++  +P       K++   +F+
Sbjct: 241 RKALASGQLIELFPEYKDKQEAIWAVFPSNRNVAPKIRLLVDFL 284


>gi|227823576|ref|YP_002827549.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227342578|gb|ACP26796.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 314

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 140/293 (47%), Gaps = 14/293 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F WD L+ F  VAR+G  + AA +L  S +++SR+I  LE  + +KLF R+ RG  LT 
Sbjct: 4   NFTWDDLQFFLAVARTGQLSTAARRLRTSHATVSRRIDRLEFALKVKLFERNPRGYVLTA 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  + E  Q ++ +      G +R++T    G   L   L EF   YP+
Sbjct: 64  MGQRFVETAERIERETEQLQFDISDGMTAQRGVVRLSTLEGFGNFFLSDRLAEFAGRYPN 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+   + + +S   AD A+ L  P ++       L    +H Y A  YL    +  
Sbjct: 124 ISLELVAIQQIMSLSRKEADIAVALAAP-KAGPYHSEVLTPYTLHVYGARSYLARHSKIR 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLG 238
           +  +L  H  + +       +ED  +   +D  +GE  P +    Q +S L+ ++    G
Sbjct: 183 TRNDLSSHRFVGY-------IEDMIFTPGLDY-LGEIQPGLRAHFQSSSILTQLKAARQG 234

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290
            G+ +LP ++ KD  NL  ++ + I    T +  C+ + +    +++A R+F+
Sbjct: 235 LGLCVLPYFMAKDETNLEIVLPEEIELKRTYWLICHRDQMA-MPRVRAVRDFL 286


>gi|167575001|ref|ZP_02367875.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 303

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 139/291 (47%), Gaps = 12/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F VVA +G F+ AA QL  + SS++R +  LE  +G+ L  R  R +TLT+ G+   
Sbjct: 7   LQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L      + ++  +P G LR++  +   + +L  +L  FL  YP + + L+
Sbjct: 67  DQIGALLSQLVEADESVADAGSEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D++ D  D A+R+  P Q   L+ R+L+       A+  YL     P+   +L 
Sbjct: 127 VSDAYLDLATDRIDVAVRIGAPAQDPGLVVRRLMENRRIVVASHDYLDTMGTPVEPGDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246
            H  + F    P      +W  + D    +  ++     + L I++  VL G GIAL+P 
Sbjct: 187 SHRCLRF----PYRQGRQSWTFSRDGQSDKVEVNGRLTANSLDILRESVLSGQGIALVPT 242

Query: 247 YIVKDNPNLVRIM----EDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V D+    R++       +TP      VY  Y    +++ K++ F  F+
Sbjct: 243 WLVHDDVAAGRMLPLFESWCVTPPGGGAQVYAAYLPNRRHSRKVQTFIAFL 293


>gi|149910250|ref|ZP_01898895.1| hypothetical transcriptional regulator [Moritella sp. PE36]
 gi|149806719|gb|EDM66684.1| hypothetical transcriptional regulator [Moritella sp. PE36]
          Length = 303

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 1/194 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GSF+  A  L+++ SS++R I  LE+E+G+ LF R  R L LTE G +  
Sbjct: 5   IRVFIKVVELGSFSKTASVLNMAPSSVARNIDSLESELGVTLFKRSTRQLLLTEDGQQFC 64

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +     +Q+ + +P G L+I+     G+  +   L EFL  YP ++I++ 
Sbjct: 65  ERAEKLLADADDLVSSMQQVNQEPEGVLKISAFESFGRQCISPLLPEFLARYPKVKIEIE 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ ID++ +  D  IR+ +P   S+L  R L T H    A+P YL     P +  +L 
Sbjct: 125 LDNQVIDLNGENVDLGIRIGRP-SDSNLRARMLFTNHTILCASPEYLAKFGMPKAPADLS 183

Query: 188 KHNLITFGDLIPKC 201
           +HN +T  +   +C
Sbjct: 184 EHNCLTLANSRQRC 197


>gi|294140060|ref|YP_003556038.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293326529|dbj|BAJ01260.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 302

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 148/292 (50%), Gaps = 14/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA + SF  AA +L+++ SS+SRQI+ LE+++ + LF R  R + L+  G  L+
Sbjct: 8   LRSFMAVAEANSFAKAARKLNMANSSVSRQIAQLESQLNVSLFTRTTRHVQLSPAGEILY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  ++E    EL   +V P G L+++      Q  L   L EFL LYPD+++ + 
Sbjct: 68  GRASGLIMEMENLAAELSAENVTPHGTLKVSVPWWFSQLHLAPLLPEFLALYPDLRVVMQ 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+    +  +  D A+RL + ++ S+LI R+L        A+P YL    E +  ++L 
Sbjct: 128 CDDGMTKLVEEGFDVAVRLSR-LKDSNLIARRLGPHSFAMAASPEYLARHAEVIKPEDLR 186

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
           +H +++F    P      +W L    +    P    +  ++   I++ C L G+GI + P
Sbjct: 187 EHAMLSFNFSTPY----HSWTLRKQGKSYRIPLKDSVLTSNNADILKQCALDGAGIIIQP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFI 290
            + ++   ++  L++++ D    S T    ++  Y +  K   ++K F +F+
Sbjct: 243 VWGIQAEIESGALIQLLPDFEVTSTTFDNGIFAVYSKESKAVNRVKVFVDFL 294


>gi|167564938|ref|ZP_02357854.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167572144|ref|ZP_02365018.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 334

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 143/288 (49%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E T+   Q ++ KP GKLR+     +G+ ++  +L EF   +PDI +QL 
Sbjct: 67  ERCVRILADVEETEASFQTNNRKPHGKLRVDMPGSIGRLIVIPSLCEFHSRFPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL    EP +I+ L 
Sbjct: 127 LSDRPVDLLQEGIDCVIRV-GALQDSSLVARRVGLFEGTTVASPAYLDKYGEPQTIEALA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +     +     +W   +D    E +++ L  VN   + +   + G G+   P 
Sbjct: 186 QHKAVNY--FSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGIEGFGLIQPPL 243

Query: 247 YIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V    +D   L  ++         +   YP +   + K++ F ++I
Sbjct: 244 FMVLPQLRDG-TLKEVLPGYKPLPMPISVVYPHSRHLSPKVRVFVDWI 290


>gi|296156335|ref|ZP_06839174.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893841|gb|EFG73620.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 303

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 142/300 (47%), Gaps = 16/300 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S   D    F  +A SGS T AA +L LS +++S+ ++ +E+  G+ L  R  R ++LT 
Sbjct: 4   SIQPDDFAFFSTLAASGSLTAAARELGLSTAAVSKHLAQMESRAGVSLVNRTTRRMSLTP 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G         + + ++     L  S   P G LR+  T+  G++ +   +  F+  +P+
Sbjct: 64  EGDLYLTRARRILNDMDDLAQLLGGSQAAPKGLLRVNATLGFGRSHVAPLISTFVRRFPE 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +QL L      +S D  D  +R  +P   + +I R++ +      A+P YL   R P 
Sbjct: 124 VDVQLQLSVDPPPLSDDAFDVCVRFGEP-PDARVIARRVASNRRLLCASPRYLAQRRAPR 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQY 234
           S  EL +HN I     I +  + +  W  T  R   E +   ++V   L+       +++
Sbjct: 183 SPAELAQHNCIG----IRQGGDGYGLWRLTSGRGAAE-KTETVRVRGNLTTNDGEIAVKW 237

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G GI +  ++ + +   +  LV +M D  TP   +Y  YP+ L+ T ++KAF + + 
Sbjct: 238 ALDGHGILMRAEWDIAEYLADGRLVHVMPDYRTPGADIYAVYPQQLQMTARVKAFVDMLI 297


>gi|271502124|ref|YP_003335150.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270345679|gb|ACZ78444.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 298

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 138/289 (47%), Gaps = 18/289 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA Q  +++SS+S ++S LE  +G++LF R  R L LT  G +  
Sbjct: 8   MALFALVAECGSFTEAARQAGMAKSSLSLRVSQLEQSLGLRLFNRTTRKLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E  ++ +Q    KPSG+LRI +   LG  LL     EF   +P + ++++
Sbjct: 68  VHCQEMRQASERAEMAMQHLRDKPSGRLRITSPAGLGATLLARLTVEFQSRFPAVSLEIV 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  D A+R  KP Q SSLI R L  +  +  A+  YL         +EL 
Sbjct: 128 VADRVIDLVEEGFDAALRTGKP-QDSSLIGRSLGQVPHYLVASYAYLAALPPITHPRELQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISCLQVNSYLSIMQYCVLG-SGIAL 243
            H          +C+    W     R   E    R+    +   L   + CVL   GI L
Sbjct: 187 AH----------RCIAHRAWPEWGFRREAEYFLWRLPQSHITDNLLYARACVLADGGITL 236

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LP ++ +   D+  LV ++ +    +  +Y  YP    N+  L +F +F
Sbjct: 237 LPAFLCREQIDSGELVCLLSEWQADTNDLYLIYPGRKLNSPALNSFIDF 285


>gi|300719065|ref|YP_003743868.1| LysR family transcriptional regulator [Erwinia billingiae Eb661]
 gi|299064901|emb|CAX62021.1| LysR family transcriptional regulator [Erwinia billingiae Eb661]
          Length = 305

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 138/286 (48%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R + LT +G +  
Sbjct: 7   MQVFIRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLQVRLLNRTTRRVRLTPEGLQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E T+  L +S  +P G+LRI     +   ++  NLK+F  LYPDI + + 
Sbjct: 67  AQCREILSLIEHTESSLTDSVRRPQGRLRIDMPGGIAHFIVMPNLKDFYRLYPDIYLMIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR  + +  S+L+ R L        A+P YL+    P + + L 
Sbjct: 127 VSDRQVDLVQEGVDCVIRTGE-LTDSTLVARPLGRFRWVTCASPDYLREYGIPETPEALS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I +     +   +  +    +  +  P      VN     ++ C+ G G+A L + 
Sbjct: 186 QHRAIHYFSGSGRRTNELRFRRGTEM-LSVPVEGDAAVNETGLYIRLCLEGFGLAQLAEN 244

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ +N     LV ++ D   PS  V   YP     +  ++AF +++
Sbjct: 245 VISENLQQGKLVEVLADWQPPSVPVTMLYPHQRFLSPAVRAFADWV 290


>gi|289627046|ref|ZP_06460000.1| LysR protein [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646298|ref|ZP_06477641.1| LysR protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298486983|ref|ZP_07005036.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158545|gb|EFH99612.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330866782|gb|EGH01491.1| LysR protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 311

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 143/296 (48%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + ++L  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L +++  P G+LR+         LL   L  F   YPDIQI
Sbjct: 64  AYYERVVRLLADMDDAETSLSDATSLPRGRLRVDVPSPFASMLLMPALPGFHARYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R  + I   SLI R++  + +  YAAP+YL     P+  +
Sbjct: 124 DMGVSDRIVDMIGENVDCVVRGGE-ITDQSLIARRVGDLQLGVYAAPYYLTRMGTPVHPR 182

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ +        +P  M        V    G   ++    N+Y++     + 
Sbjct: 183 ELEDSAHRIVGYLWARTSKALPYAMHRDGEKVHVQ---GRYALAVDDGNAYIAA---GLA 236

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LPDY+ + +    +L+ + +D    S  +Y  +P     + K++ F ++I
Sbjct: 237 GMGILWLPDYMARQHQVRGDLIPLFKDWQLDSMPMYVAFPPNRHISIKVRVFIDWI 292


>gi|254000391|ref|YP_003052454.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253987070|gb|ACT51927.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 301

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 148/297 (49%), Gaps = 18/297 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  VA+  SF+ AA +L +S+S++S+ ++ LET +G +L  R  R L+LTE G
Sbjct: 3   DLNLMAIFAHVAQEQSFSTAARKLGMSRSAVSKAVAKLETALGARLLNRSTRHLSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +    + +  + E     ++  + KPSG LR+A ++  G   +   + +FL  YP+++
Sbjct: 63  AGMLEHCARIVTESERASQVVENLNSKPSGTLRVAASVAFGTLHVAPAMADFLQQYPEVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + + ++ ID++ +  D  I++ +    S+L+ RKL  +       P Y +    P S 
Sbjct: 123 LDMTITDRAIDMAEEGYDVIIKVAQE-PPSALVARKLAPVRRQVCGTPAYFRQHGLPTSP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  HN +   D I    + +   +  +  I  P    +++N   ++ Q  + G G+AL
Sbjct: 182 MALTAHNCL---DYIHSGDKGYWRFSGPEGEIAVPVSGRVRINDDEALSQVVLGGFGLAL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP +IV +   + +L  ++ D I     VY  Y   L N         F+ LKAR +
Sbjct: 239 LPTFIVGNHLQSGHLQSVLSDYIPVEQHVYAMY---LPN--------RFLPLKARTF 284


>gi|306846367|ref|ZP_07478918.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306273210|gb|EFM55101.1| LysR family transcriptional regulator [Brucella sp. BO1]
          Length = 297

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G +L 
Sbjct: 9   LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++ +   ++ E   +P+G +R++      Q++L   L+ FL  +PDI I+L 
Sbjct: 69  AQVGPALAEIASGFAQIGELRERPAGTVRLSADEYAIQSVLWPALERFLAEFPDIHIELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   Q+L 
Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKSGKPKRPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+ I     +P   E F W  T  +   + RI+    L   S   ++Q C+ G G+A L
Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSQHGKDIRITTQGRLVFTSIAQVLQACLAGFGLAYL 244

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P DY  +  ++  LV ++ D        +  YP   ++   L A 
Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289


>gi|167718264|ref|ZP_02401500.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           DM98]
          Length = 298

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  S +PSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 67  EHCIKIITEIAETDASFQVGSRRPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   V G G+     
Sbjct: 186 AHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTL 243

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           ++V   P+L+      + P F      +   YP +   + K++ F ++I
Sbjct: 244 FMVL--PHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWI 290


>gi|76819501|ref|YP_337608.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126456556|ref|YP_001075227.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167742167|ref|ZP_02414941.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167819345|ref|ZP_02451025.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167849191|ref|ZP_02474699.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167897789|ref|ZP_02485191.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167906134|ref|ZP_02493339.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167914456|ref|ZP_02501547.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167922355|ref|ZP_02509446.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|242311132|ref|ZP_04810149.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254189944|ref|ZP_04896453.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254262347|ref|ZP_04953212.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|76583974|gb|ABA53448.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|126230324|gb|ABN93737.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|157937621|gb|EDO93291.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|242134371|gb|EES20774.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254213349|gb|EET02734.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 299

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGAPKRPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++    G GIA
Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           LLP +   +      LVR++ D   P   +Y  Y
Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270


>gi|220919812|ref|YP_002495115.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
 gi|219952232|gb|ACL62623.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 298

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 144/292 (49%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ L  F  +AR G    AA +L +  +++SR+I+ LE  +  +LF R + G  LTE 
Sbjct: 2   FDWNDLTFFLELARHGRLMPAARRLKVDHTTVSRRIAELERNLDSRLFQRCSGGFVLTEA 61

Query: 63  GSKLHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           G KL  +   +  K+ +    + LQE+  +  G++R+AT   +    L     EF    P
Sbjct: 62  GHKLFVIAEAIEQKMLSVPEALGLQEAG-QLLGRVRVATMEGIAAFYLAAKFSEFAASMP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L+ +   I+++   AD ++    P Q   L+ R++    +  +A+  YL     P
Sbjct: 121 GVVVELVTERHLINLTKREADISVSFVPP-QGPRLLVRRVGEFRLALFASERYLARRGRP 179

Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-G 238
            +  +L  H+ + +  DL+   +E  +WL  V  P      + +  ++ ++  Q  V  G
Sbjct: 180 ATRADLQDHDFVDYVEDLV--AIEPVHWLLEVLTP-----SNVVFRSTSMAAQQTAVASG 232

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +G+ALLP +  K NP L+ ++ + +     +Y    E ++  G+++A   F+
Sbjct: 233 AGMALLPLFSAKTNPALIPVLPNEVVVRRDLYLGVHEDIEYVGRVRAVTRFL 284


>gi|148548512|ref|YP_001268614.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148512570|gb|ABQ79430.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 313

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 147/297 (49%), Gaps = 12/297 (4%)

Query: 4   DWDKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           D D L  F V   VA + SF  A++ L +S S++ ++++ LE+ +G++LF+R  R +TLT
Sbjct: 15  DMDSLSGFVVFNRVAETRSFVAASQSLGISASAVGKRVARLESRLGVRLFHRSTRSITLT 74

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+     +  +  ++E T+ EL ++S  P G+LR+  ++     L+   L EF+ LYP
Sbjct: 75  AEGTMFLERSRRILAEIEATEQELSQASETPRGRLRV--SMPQVTRLVMPALAEFMALYP 132

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L   ++ +DI  +  D  +R  +P+  S L  + L        A+P YL+    P
Sbjct: 133 QVELDLDFSDRMVDIVGEGFDVVMRGGQPVD-SRLSAKFLGHFQHRLVASPEYLRERGTP 191

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGS 239
           L  ++L  H  + +    P   +   W    + P     I    V +++   + + +   
Sbjct: 192 LHPRDLAAHTCLHY--RFPSNGKLETWPLRQEHPEQAYDIPISMVCNHVETRVCFALNHR 249

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  LPD+ V     N +LV +++D +    + Y  +P   +   KL+ F +F+  +
Sbjct: 250 GITCLPDFNVGRELANGSLVSVLDDFMERRGSFYLLWPSGRQMPPKLRVFIDFMLAR 306


>gi|262369809|ref|ZP_06063137.1| LysR substrate binding domain-containing protein [Acinetobacter
           johnsonii SH046]
 gi|262315877|gb|EEY96916.1| LysR substrate binding domain-containing protein [Acinetobacter
           johnsonii SH046]
          Length = 302

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 147/295 (49%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F  V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLSDLDDFYCFAQVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  + + QN +   L  FL  YP
Sbjct: 61  DIGMNIYRHAQVMMNAAQAAHDLVDHLSLQPRGVIKLSLPVSIAQNEIARILPSFLKTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++Q+++ N+ +DI  +  D A+R+R  +    SL+ RK   I  H +A+  YL    E
Sbjct: 121 EIKVQMMVTNRRVDIINEGFDIALRVRSNLDDDPSLVIRKFENIEQHLFASQAYLNEFGE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               ++L +H++++  D   + ++    +    +   + R++ + + S LS++   V  +
Sbjct: 181 LKQPEDLSQHHILSMVD---EHLDQHIIVHNDAQQQKKIRVNPVVMGSDLSMLAQLVRKN 237

Query: 240 -GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLPD IV+D   +  LVR++ D   P    +  YP      G L A R FI
Sbjct: 238 CGIALLPDSIVQDMVKSGELVRVLPDWKAPHGIFHAVYP---SRRGLLPAVRVFI 289


>gi|24376001|ref|NP_720044.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24351004|gb|AAN57488.1|AE015885_1 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 325

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 139/278 (50%), Gaps = 9/278 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE G   +  
Sbjct: 11  VFATIAEKGSMSAAAQQLNLSSSAVSQQVAKLEMDMGISLFHRNTRHLTLTEAGHLFYEN 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   +E+ + +L      PSG+L+IA  +  G  LL   L   L  +P I + L L 
Sbjct: 71  CIKIIKIVESGEHKLNALKGTPSGELKIAAPVGFGSGLLSQPLANLLAAHPQISLNLQLQ 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  IDI  +  D AI +  P+  S+LI R L    M   AAP Y+   +      EL   
Sbjct: 131 DGPIDIVNEGIDLAICI-GPLSDSNLIARPLADWRMLLCAAPSYIPQHQILQHPGELQAF 189

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N I+     P+ +        V+  +   RIS   VN+  +++Q  + G G A+LP+  V
Sbjct: 190 NRISHSYAKPEFLTHSQTQERVE--LSAQRIS---VNNMQTLIQLTLDGLGFAVLPEPEV 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
                +  LV ++ +    +++VY       K   K+K
Sbjct: 245 HQYLASGQLVTLLPEWSLRTYSVYSVTSARDKQPAKVK 282


>gi|144898709|emb|CAM75573.1| transcriptional regulator, LysR family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 298

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 133/291 (45%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L  F      G FT AA +L  S+S ISRQ++ LE ++G +L  R  R L+ TE G 
Sbjct: 4   FAALTAFVQTVECGGFTQAARRLGQSKSLISRQVAQLEAQLGARLLQRTTRKLSTTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L     E+ +    P GKLRI+  +  G   L   L  FL   P++++
Sbjct: 64  AYYQRAHRILADLAEASAEIGQLQSMPRGKLRISAPMSFGVLHLTPALPRFLESCPELEM 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  D A+R+ + +  SSLI R++  I     A+P YL  C  P    
Sbjct: 124 DLALTDRFVDLVEEGFDVAVRIGR-LADSSLIVRRITPIRRVLCASPAYLARCGHPQRPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +L  H  +  G L    M    W   T D  +   R+SC  +  +  ++    + G G  
Sbjct: 183 DLAHHACL--GHLE---MGSSEWRFLTADNGLETVRVSCRFRAGNGEALRTMALAGLGFV 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP + +  +     LV +++  +     +Y  YP     + K++ F +F+
Sbjct: 238 YLPSFFIGADLRAGTLVSVLDQYVPQDSALYGAYPHGRHLSAKVRVFLDFL 288


>gi|71734735|ref|YP_274406.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555288|gb|AAZ34499.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320328788|gb|EFW84787.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 303

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 9/304 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L +R  R L LT
Sbjct: 1   MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRKVQQLEIQLGTRLLHRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H         L     +L     +P G+LRIA   D         + +FL  YP
Sbjct: 61  QAGEDFHERCVGAVDGLMDAAEQLVSGREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDTMVASPAYIAAHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P S+Q L  H  ++     P     +  L   D  + E +++     N+  ++ +  + G
Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K R
Sbjct: 237 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 296

Query: 296 DWKF 299
           D  F
Sbjct: 297 DKAF 300


>gi|114561684|ref|YP_749197.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114332977|gb|ABI70359.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 312

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 140/297 (47%), Gaps = 19/297 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +++++F  V   GSFT AA+ L ++++++SR+I+ LE + G++L +R  R L LTE G
Sbjct: 2   DLNRVQIFSQVVEQGSFTGAAKALGITKATVSRKIADLEADAGVQLLFRTTRSLKLTEAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S  +   S++   L+  +  L  S     G L++   I+LGQ  L   L  FL  YP+I 
Sbjct: 62  SSYYHRISKILQDLQNAEDLLSASQQDIKGNLKVICPIELGQLFLGRILARFLAAYPNIT 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I   L N+ ID+  +  D   ++ +      L    LVT      A+P YLK    P   
Sbjct: 122 IDAELTNRKIDVIEEGVDFLFQITEQ-HDPKLQSYSLVTASRLLMASPTYLKRHGTPQIP 180

Query: 184 QELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           Q+L  H  I        G    +  +   WL  +D P      + L+VN+     +  + 
Sbjct: 181 QDLMLHTAIKLQSAHINGGW--RIFDGNQWL-DLDPP------AQLKVNNVTFAREAAIE 231

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G GI  +P +I +   D+  L+ I+ED       V   +P+ +    K + F  F++
Sbjct: 232 GLGITAVPVFIAQEAIDSKQLIPILEDFPMMQTKVTLSFPQRVYLPRKYRVFVEFLY 288


>gi|302131086|ref|ZP_07257076.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 307

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 142/287 (49%), Gaps = 12/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++T+ G  
Sbjct: 7   NDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDDGQV 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     V   L+  +  L      PSG+LR++  + LG+  +  +++  L  +P + + 
Sbjct: 67  LYERCVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIERCLKDWPSLSVD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    +P +  +
Sbjct: 127 ITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHPQPQTPDD 186

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H  + F   G L+P     +N+    DR +       LQ++S  S+ Q  V G GIA
Sbjct: 187 LSEHQCLHFVSGGRLLP-----WNFRVN-DRSLSVTHGGRLQMDSAESLHQSAVAGLGIA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            LP Y++ D+     LV+++ +    +  +   YP     + K++ F
Sbjct: 241 TLPSYVINDDLRSGKLVQLLAEYAEAAEPIRVIYPSKRHLSPKIRLF 287


>gi|262164197|ref|ZP_06031935.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|262026577|gb|EEY45244.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 304

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V   GSF+ A+++L +++S++S+++S LE ++GI+L  R  R L+LTE G + +  
Sbjct: 10  VFVAVVECGSFSLASKKLKITKSAVSKRLSQLEDDLGIRLINRTTRKLSLTEAGERYYYH 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S+     +     + E   +P GKL+I   +  G   +   + +F+ +YP ++I L L+
Sbjct: 70  VSQALSYAQQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYPKVEIDLQLE 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D AIR+   + +S+L+ ++LVT      A+P YL    EP    +L +H
Sbjct: 130 DQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCRSVLCASPEYLTRHGEPEKPADLLEH 188

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + +          F+      + I +     L VN+  +I +  + G GIA LP ++V
Sbjct: 189 NCLVYSYFRGGSEWTFHNQQQEVKVIPK---GNLTVNNSEAIRRALLAGLGIAQLPTFLV 245

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +     L  +M     P   VY  +PE      K++AF +F+
Sbjct: 246 SKDLARGTLKSVMTQYSLPVHAVYAVFPERKHLPYKVRAFIDFL 289


>gi|119947131|ref|YP_944811.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
 gi|119865735|gb|ABM05212.1| transcriptional regulator, LysR family [Psychromonas ingrahamii 37]
          Length = 298

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W  +  F  VA   SFT A ++L +S + +SRQI+ LE  + ++L YR  R +++T++
Sbjct: 1   MQWQGINEFVAVAEMHSFTLAGKKLKISTAQVSRQINALEKRLNVRLLYRTTRHVSVTQE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    V   L   +  +     KP G ++++  I  G+  +   + +FL  Y  I
Sbjct: 61  GQIFYQHCHNVLEGLAAAEQAISSLQAKPQGHIKLSAPITYGEQKILPLINDFLCRYERI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+   L N+ +D+     D AIRL   +  SSL+ +KL        A+P YLK   EP S
Sbjct: 121 QVTCELTNQRVDLVDGGFDLAIRL-GDLPDSSLVAKKLAARENFVCASPEYLKKFGEPHS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + EL +HN +           D+ W  T        R+   L+ NS   ++   +   GI
Sbjct: 180 LSELVQHNCLL-------GTRDY-WHFTEQGKEKNIRVRGNLRCNSGFGLVDAALKNIGI 231

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY ++++ N   L+ ++ +V      ++  YP+    + K++   +F+
Sbjct: 232 IQLPDYYLQEHINSGKLISLLNNVRVAEEGIWAVYPQNRYLSPKIRLLIDFL 283


>gi|296101170|ref|YP_003611316.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055629|gb|ADF60367.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 299

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 140/290 (48%), Gaps = 20/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA++  L +SS+S++IS LE +VGI+L  R  R L LT  G    
Sbjct: 8   MALFALVAEMGSFTAAAQKADLPKSSVSQRISQLEQQVGIRLLNRTTRRLNLTFAGEHYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E  +  +Q     PSG+LRI     +G  LL     EF L YPD+ + + 
Sbjct: 68  VHCREMLAASERAEYAIQRLRENPSGRLRITCPAGIGATLLAHLNAEFQLRYPDVSLDVS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186
           + +  +D+     D A+R  KP Q SSLI R +     +  A+P YL   REPL   ++L
Sbjct: 128 ISDDVLDLVESGFDVALRTGKP-QDSSLIGRMIGHCPRYMLASPEYLAR-REPLHHPRQL 185

Query: 187 DKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H  IT       L+    ED+ +L            +    ++ +   +  V G+GI 
Sbjct: 186 VDHRCITHKAWSEWLLQSESEDYRYLPD----------NAHMTDNLVYARECAVAGAGIT 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LLP ++++D      LV+++ +       ++  YP    N+  L ++ +F
Sbjct: 236 LLPAFLLEDKIEKGALVQVLPEWNVEGNDLWLAYPSRKLNSPALMSYIDF 285


>gi|107022467|ref|YP_620794.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116689416|ref|YP_835039.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105892656|gb|ABF75821.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116647505|gb|ABK08146.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 310

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA+ L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 9   DLEAWAIFARVAETGSFAKAADLLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G + L   L  FL  YP + 
Sbjct: 69  ELLRDRAIRLLADAELIENEASAQALEPHGLVRVNAPMSFGLHHLSPVLPAFLERYPRVD 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  S+L  R+L  +     A+P YL     P   
Sbjct: 129 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSTLRSRRLCAVRRPLVASPAYLDRRGRPTHP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L++H  +T+ +L       F   A+ D  +G      ++ N+   I+   V G G+AL
Sbjct: 188 RDLEQHVCLTYTNLPTPEYWRFRHPASGDE-VGVSVHGRIRTNNADVILPALVGGHGLAL 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++V D      L  +M D       V    P  +    ++    +F+
Sbjct: 247 QPEFLVWDELQRGALEEVMSDWKIADINVNLVTPPGMLRAARVTVLLDFL 296


>gi|299531717|ref|ZP_07045121.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298720276|gb|EFI61229.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 308

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 142/289 (49%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V  +G+FT AA+ L + ++S+++ +  LE  + +KL  R  R +T+T  G+  +
Sbjct: 7   MRIFARVVEAGTFTRAADSLQMPKASVTKNVQALEERLRVKLLNRTTRRVTVTADGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +  +  + ++   P G+LR+     + + L+  +L EF   YP+IQI L 
Sbjct: 67  DRAVRLLADFDDLEASVSQARTTPRGRLRVDVGTTVARLLIIPHLSEFQSRYPEIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR  + +   SL+ R++  +     AAP YL+    P   ++L+
Sbjct: 127 VSDRTVDLISDNVDCVIRGGE-LADQSLVARRIGNLEFITVAAPEYLQRHGVPRHPRDLE 185

Query: 188 K--HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
               N+I F  +  +    +F+    V        +   + N+Y+S +   + G GI  L
Sbjct: 186 SGHRNVIYFSPVSARRYPLEFHKGGEVIEIASPAHLGVNEGNAYISAI---LAGQGIGQL 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + +    +N  L R++ED   P   +Y  YP     + K++AF +++
Sbjct: 243 SRFQIHKYLENGQLQRVLEDWKHPLLPIYVVYPPNSHLSAKVRAFVDWV 291


>gi|117620002|ref|YP_857691.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561409|gb|ABK38357.1| LysR-family transcriptional regulatory protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 299

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 143/287 (49%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           LRVF  V   GS + A E+L +S++ ++R ++ LE  +G +L +R  R L+LT  G + L
Sbjct: 7   LRVFVSVVEQGSLSGAGEKLEMSRAMVTRYLAELEQWMGARLLHRTTRRLSLTGPGEEAL 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R  + +    E  QI ++     P G+LRI ++  L + LL G   ++L  Y    I +
Sbjct: 67  NRARAMLALGEEMEQIAVRGDEA-PKGQLRITSSYSLSEALLVGAANDYLACYAGTAIDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +++  +  D A+R+   +   +L+ R+L T H    A+P YL     P  +Q+L
Sbjct: 126 LLLDRTVNLVEERIDLAVRITNDLD-PNLVARRLGTCHSVVCASPAYLARHPTPHKVQDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +T+     K + +F      D P   P    L  N    +++  + G+GI+L P 
Sbjct: 185 ALHNCLTY-TYFGKSLWEFQ---GPDGPESVPVSGNLSANISNLLLEATLEGAGISLQPR 240

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y V+   D   LV ++E        VY  Y    + +  L++F +F+
Sbjct: 241 YSVQPHLDTGTLVPLLEQWQPKRLGVYAVYGTRKQMSPLLRSFLDFL 287


>gi|300717430|ref|YP_003742233.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661]
 gi|299063266|emb|CAX60386.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661]
          Length = 300

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 18/293 (6%)

Query: 5   WDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +++L      AR+G   S+T AA  L +S S+IS+ I  LET++GI LF R  R L LT 
Sbjct: 7   FERLTGLIAFARAGALGSYTAAARSLSVSPSAISKSIQRLETQLGITLFTRTTRSLVLTA 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +LH     +    +  +   + S  +P+G LRIA +  +G +++   L +F  LYP 
Sbjct: 67  EGRELHERALRLLQDADEIEQIAKRSRAEPAGTLRIAASYPIGLHMIAPVLPQFCALYPK 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L L ++ I I  +  D A+RL   +  S+L+ R+L    +  YA+P YL +C  P 
Sbjct: 127 VKIDLRLSDRVISIVDESIDIAVRL-GDLDDSNLLSRRLSPYRLGCYASPEYLASCSAPE 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----VNSYLSIMQYCV 236
           +  +L  H  +       +  + F W   V    GE     L      V++  +++    
Sbjct: 186 NPNDLMSHKTVNL--RYQQTGQLFRWPFQV----GERETEILPSSDVVVDASEAVLALVA 239

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G GI +   ++     +N  LV I+         +   + E+ ++   ++A 
Sbjct: 240 AGGGIGMATSFMADSWVENKRLVPILTAFAVERHNITALWHESRRSNPAVRAL 292


>gi|152986793|ref|YP_001347649.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961951|gb|ABR83976.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 297

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 150/296 (50%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA +GSFT AA+ L + ++++S  +  LE ++G +L +R  R + LT+ GS 
Sbjct: 5   DSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTQDGSA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +   +E  +   ++ S + SG+L++     + + L+   L  F   +PDI+++
Sbjct: 65  VLERCRHLLEDMEELEGLFRDGS-RASGRLKVDVPSRVARLLIAPALPAFFREHPDIELE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DCA+R+ + + +SSL+ R+L  + +   A+P YL     P + ++
Sbjct: 124 LGSSDRSVDLVQEGVDCALRVGQ-LGNSSLVARRLGEMALINCASPAYLAQHGVPQAPEQ 182

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           LD H  + +    P       W      R +     S + VN+  S +  C+ G G+  +
Sbjct: 183 LDGHWAVNYAS--PTSGRVLPWEYREGGRSVTRVLRSRVTVNNAESYIACCLSGLGLIQI 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           P Y V+++     L  ++      +  VY  YP     + ++KAF +++   L+AR
Sbjct: 241 PAYDVREHIERGELREVLPQWRAEAMPVYALYPHRRHLSRRVKAFVDWLERLLRAR 296


>gi|170698250|ref|ZP_02889327.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136831|gb|EDT05082.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 294

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 140/295 (47%), Gaps = 16/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVSTVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GALEDSTLIARPLGAWKMIACASPAYLKRQGTPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
             +L  H  + +G           W   +D   G  R   +Q     N+   +    + G
Sbjct: 180 PADLAGHTCLLYGR-----ERRVGWEFRID---GAARTFDVQGPLVANNGEVVRDAAIAG 231

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLP +IV    D+  LV +++       T+   +P+  +    L+ F  F+
Sbjct: 232 LGIALLPHFIVGAALDSGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFL 286


>gi|217972029|ref|YP_002356780.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217497164|gb|ACK45357.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 303

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 18/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIENTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKLKGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +EL  HN I  G      + P        +A   R +        +VNS + + Q  +  
Sbjct: 182 KELSLHNGILLGTSRSAPIWPLGKGSRKTMANFQRKV--------RVNSPIMVKQLAMDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA+L +   K    N  LV I+++     F VY  Y    +    +  F +F F+K
Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISVFLDF-FVK 290


>gi|161523309|ref|YP_001578321.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351918|ref|YP_001947546.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221214265|ref|ZP_03587237.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160340738|gb|ABX13824.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335940|dbj|BAG45010.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221165920|gb|EED98394.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 294

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 132/284 (46%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G   +  
Sbjct: 9   AFVRAADALSFVAAGRTLGISASAVGKTIARLEQSLGVRLFNRTTRRITLTDEGRHFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L   +  +  S+ +P GKLR++  + +G   L   L EF   YPD+++ L  +
Sbjct: 69  CQRILEDLRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D  IR   P+  SSL+ R+L        A P YL     P +  +L+ H
Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPRAPCDLEAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + +    P   +  +W    D        + +  N+  ++    + G GI  +PD++ 
Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +D      LV +++D           +P + + + KL+ F +F+
Sbjct: 245 RDALERGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288


>gi|88859573|ref|ZP_01134213.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
 gi|88818590|gb|EAR28405.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
          Length = 299

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 136/292 (46%), Gaps = 19/292 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  V + GSF  AA  L  S S IS++IS LE+ +G++L  R  R L+LT +G 
Sbjct: 7   FDGIEIFVQVVKCGSFNAAASVLSHSSSHISKEISKLESRIGVRLMNRTTRSLSLTPEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   ++    E     +    V+P G L+I+  I   Q  LQ  + ++L +YP++ +
Sbjct: 67  AYFQQCVQLISDAEQAVSLITADDVQPKGTLKISCPIGFSQQYLQSVIAQYLDMYPNVTL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  L +K ID+  D  D AIR  + +  SSLI +++     H   +  Y++    P   +
Sbjct: 127 EWDLSDKRIDLIADGYDLAIRASEQLVESSLICKRVFHCKAHVVVSKGYIEKYGRPHHPR 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQYCVL 237
           EL  H+ I + +L      DF     V+R  G P       ++ C      L+++Q    
Sbjct: 187 ELAAHHCICYSNLKMPGRWDF-----VERD-GTPFQVDVRQKVRCNNGQMQLALVQ---A 237

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             GI  LP + + D   +  L  +  D   P   VY  YP     + K++ F
Sbjct: 238 HQGITRLPAFYLNDALQSGELEVLFCDYKEPEVNVYAIYPSRKHLSPKVRCF 289


>gi|86144245|ref|ZP_01062577.1| hypothetical protein MED222_07548 [Vibrio sp. MED222]
 gi|218676327|ref|YP_002395146.1| transcriptional regulators, LysR family [Vibrio splendidus LGP32]
 gi|85837144|gb|EAQ55256.1| hypothetical protein MED222_07548 [Vibrio sp. MED222]
 gi|218324595|emb|CAV26127.1| transcriptional regulators, LysR family [Vibrio splendidus LGP32]
          Length = 298

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 154/300 (51%), Gaps = 20/300 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A+  SFT  A +L ++QS++S++I+ LE+++G+ LF R++R ++LT  G    
Sbjct: 7   IRIFVETAQLNSFTATANKLDVTQSAVSKKIAWLESDLGMTLFQRNSRKISLTHAGKDYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  ++ T +  L+  +    G+L+I+        LL   L+ F+  +P I+I L 
Sbjct: 67  TYCSRLLEEMSTIESRLKRETESVEGELKISAPSAFSSMLLSEPLQAFIEQHPGIRINLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D++ ++++    D AIR  + ++ S L  R L    +H +A+P YL+    PL  Q+L 
Sbjct: 127 IDDRIVNLNEHNIDVAIRASQ-LKDSGLKARFLFNNKVHYFASPDYLEKQGIPLYPQDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGI 241
           +H  +T+  + P       W  T D+     + + ++VN   +      +++    G GI
Sbjct: 186 EHQCLTYSLMSPAN----EWRFT-DK---SDKTNTIKVNQIFTSDSPDMLLKMARQGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARD 296
             LPD++ K   +   L R++ED       +Y  Y  +     +++ F +F+  +L AR+
Sbjct: 238 VALPDWMGKEYVEKGELKRLLEDWSNNQLPMYVVYHASDYLPQRIRVFIDFLAKYLSARN 297


>gi|93006232|ref|YP_580669.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis
           K5]
 gi|92393910|gb|ABE75185.1| transcriptional regulator, LysR family [Psychrobacter
           cryohalolentis K5]
          Length = 299

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 136/275 (49%), Gaps = 15/275 (5%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D LR   VF  V   GSF+ +A +L ++ S++S+QI  LE E+G+ L +R  R L+LTE 
Sbjct: 3   DNLRGMAVFASVVGHGSFSGSARELGITTSAVSQQIRSLENELGVVLLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  +    +V    E  +I++ +   + +G LRIATT +LG N +   L  ++  + D+
Sbjct: 63  GASFYEAAKDVVSAAEQGRIKVNQLRDELAGSLRIATTPELGVNHILPALSTWMSAHDDL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I    DN  ID+  +  D AIR+   I  S++    L  +     A+P YL+  ++  +
Sbjct: 123 SITYFADNNYIDMIDERIDIAIRMSPNINDSTVSNHPLSDVRQMLVASPQYLRQHKKIET 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRI---SCLQVNSYLSIMQYCVLG 238
            ++L  H+LI         M+D N +       G + RI   S +  N+    M     G
Sbjct: 183 PKDLADHHLICI-----DIMKDTNNVELTQTETGKKTRIKMTSRIHTNNVFMAMTIAKEG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVY 270
            GI  + +  VK   ++ NLV ++     PSF +Y
Sbjct: 238 HGILRMMEMDVKKELESGNLVEVLTGYQMPSFVLY 272


>gi|330819148|ref|YP_004348010.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327371143|gb|AEA62498.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 302

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 154/312 (49%), Gaps = 39/312 (12%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF +V R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +T+ G +
Sbjct: 8   DDLRVFSIVVRVASFSAAAEQLGVSPAYVSKRVALLEGQLGTRLLHRSTRRVAVTDSGER 67

Query: 66  L----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +     ++  +V H +E    ++  +   P G LRI+++   G+++L   L +F   +P 
Sbjct: 68  VLAWAEKILDDVDHLVE----DVSTTRTVPRGTLRISSSFGFGRHVLAPALLDFSERFPQ 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L ++ +D++ +  D  +R+   I +  LI ++L T +    A+P YL+    P 
Sbjct: 124 INVRLDLFDRLVDVAGEGFDLDVRIGDEI-AEHLIAKRLATNYRVLCASPAYLERHGAPR 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI---- 231
            I +L  H          +C+     +   D P G  R+      S ++V   LS     
Sbjct: 183 QIADLGSH----------QCLA----IKERDHPFGVWRLTQRGETSSVKVGGALSTNHGE 228

Query: 232 --MQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +Q+ + G GI L   +      D+  L R++ DV  P+  V+  YP  L  + K++  
Sbjct: 229 VAVQWALAGKGIVLRSIWEAGPLLDSGALKRVLPDVTQPA-NVWAVYPARLAASAKVRVC 287

Query: 287 RNFIFLKARDWK 298
            +F+      W+
Sbjct: 288 VDFLAEAFAQWR 299


>gi|157376746|ref|YP_001475346.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319120|gb|ABV38218.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 293

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 135/271 (49%), Gaps = 9/271 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F VV    SF+ A+ +L++  S++SRQ++ LE     +L YR  R + LT +G    
Sbjct: 11  MRTFLVVVERHSFSAASRELNIVVSAVSRQVADLERHFNCQLLYRTTRAMHLTSEGEHYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E+  +L+  +   +      +G L+I T  +      Q +++EFL L+P +++  +
Sbjct: 71  RQFQEIIARLDNLESFSRHRGEIIAGHLKITTPQNSALIGFQSSIQEFLTLHPRVKVSWL 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             N+ +D+  +  D A+R+ K ++ S+L+ R      +   A+P YL+    P    +LD
Sbjct: 131 QMNRYVDLVDEGVDLALRVGK-LEDSNLVARPFGEFTLKFVASPEYLRVNGTPSHPSQLD 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           KH  I    L         W           R+S  ++VN+   + Q+ V   G+A LPD
Sbjct: 190 KHRCI----LDSSNRHPGRWQYQGSDKEELVRVSADVEVNNGQMVAQFAVADQGVAQLPD 245

Query: 247 YIVKDNPN---LVRIMEDVITPSFTVYFCYP 274
           ++++D+ +   LV I+E+   PS  +Y  YP
Sbjct: 246 FLLQDHIDSGRLVSILEEFAMPSIPMYLVYP 276


>gi|28871413|ref|NP_794032.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854664|gb|AAO57727.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 307

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 142/287 (49%), Gaps = 12/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++T+ G  
Sbjct: 7   NDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDDGQV 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     V   L+  +  L      PSG+LR++  + LG+  +  +++  L  +P + + 
Sbjct: 67  LYERCVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIERCLKDWPSLSVD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    +P +  +
Sbjct: 127 ITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHPQPQTPDD 186

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H  + F   G L+P     +N+    DR +       LQ++S  S+ Q  V G GIA
Sbjct: 187 LSEHQCLHFVSGGRLLP-----WNFRVN-DRSLSVTHGGRLQMDSAESLHQSAVAGLGIA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            LP Y++ D+     LV+++ +    +  +   YP     + K++ F
Sbjct: 241 TLPSYVINDDLRSGKLVQLLAEYAEAAEPIRVIYPSKRHLSPKIRLF 287


>gi|320324417|gb|EFW80496.1| LysR protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320328462|gb|EFW84464.1| LysR protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 311

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 143/296 (48%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + ++L  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L +++  P G+LR+         LL   L  F   YPDIQI
Sbjct: 64  AYYERVVRLLADMDDAETSLSDATSLPRGRLRVDVPSPFASMLLMPALPGFHARYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R  + I   SLI R++  + +  YAAP+YL     P+  +
Sbjct: 124 DMGVSDRIVDMIGENVDCVVRGGE-ITDQSLIARRVGDLQLGVYAAPYYLTRMGTPVHPR 182

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ +        +P  M        V    G   ++    N+Y++     + 
Sbjct: 183 ELEDSAHRVVGYLWARTSKALPYAMHRDGEKVHVQ---GRYALAVDDGNAYIAA---GLA 236

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LPDY+ + +    +L+ + +D    S  +Y  +P     + K++ F ++I
Sbjct: 237 GMGILWLPDYMARQHQVRGDLIPLFKDWQLDSMPMYVAFPPNRHISIKVRVFIDWI 292


>gi|300693770|ref|YP_003749743.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299075807|emb|CBJ35116.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 292

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 117/247 (47%), Gaps = 7/247 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++  F  AAE L +  S++SR+I  LE  +G++L +R  R + LTE G  
Sbjct: 5   NDMALFVEVVKAKGFRGAAEALGMPNSTLSRRIGALEKAIGLRLLHRTTRKIELTEAGQI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      +L E   +PSG LR +  +D     L   + EF  LYP I   
Sbjct: 65  YFERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVIYLAPLIAEFAGLYPGITFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D+  +  D AIR+ +P +SS LI R L  +  H YA+P YL+   EP +  +
Sbjct: 125 FDLTPRQVDLVSEPFDVAIRMGEP-ESSQLIARPLALLQAHLYASPGYLERSGEPATPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  +    +    +      ATV   +G        +NS   I +   L  GI L+P
Sbjct: 184 LKRHECLGMLKVGSWTLHQGAQTATVS--VG----GRFTLNSVGMIRRLATLDMGIILVP 237

Query: 246 DYIVKDN 252
           + IV D+
Sbjct: 238 EAIVADD 244


>gi|114563446|ref|YP_750959.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334739|gb|ABI72121.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 289

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 122/244 (50%), Gaps = 7/244 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  G++  AA + ++S++ +S+ I+ LE  +G+KL  R  R   LTE G   +
Sbjct: 7   MQVFSHVAEQGNYGTAAHKFNISRTMVSKHINQLEAYLGVKLINRTTRQQELTESGHVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   +E  +  LQ  S  P G +RI   +  G  +L   + +FLL YP I ++L 
Sbjct: 67  QECQIILMAIEQAENTLQSMSSTPKGTIRINAPVSFGNIVLAPIVNQFLLQYPQIDVELR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN  ID  +D+AD  +R+   +  S+LI R ++   M   A+PHYL       SI +L 
Sbjct: 127 LDNNLIDPMVDHADVVVRIGN-LDDSALIGRHIMNYEMVFCASPHYLAQHSPIASISDLP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ + F             LA     +   R   L  NS L ++Q  + G GI L P  
Sbjct: 186 QHDCLGFS------YSKSASLAVAHSQLFGKRSFRLLSNSGLVLIQAAIDGLGIILQPQI 239

Query: 248 IVKD 251
           +V++
Sbjct: 240 VVQE 243


>gi|134296059|ref|YP_001119794.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139216|gb|ABO54959.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 301

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 129/273 (47%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ EL
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWTFQEDGKVVSIRVSGTMECSDGAVLHEWCLAGYGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + V D+     LV +++    P   ++  +P+
Sbjct: 242 WWEVGDDVAAGRLVSVLDAFAAPPIGIHAVFPQ 274


>gi|296160079|ref|ZP_06842898.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295889553|gb|EFG69352.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 352

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 133/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE G+  
Sbjct: 6   SMRVFVKVADLGSFVGAAGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGTTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE  +  +   + +P G LRI   +  G + L   ++ +   YPD+   +
Sbjct: 66  LERVRHILDDLEGVEQMVVARNQEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVPDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++ +S++ R+L T +M   A P YL     P   + L
Sbjct: 126 TLADRHVDLVEEGFDVGILVARHMRGASIVTRRLTTGYMTVCATPAYLAQHGTPTRPEHL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
             H  ++      +  E          P GE R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 LAHPCLS------RPAEQGGEERVFTGPDGEVRVRPTNAIVANNAEMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LV ++ +   P   +   YP  L    K++ F
Sbjct: 240 LPSYLIGRDLASGRLVPLLSNYRLPQIEITIAYPSRLHLPAKVRTF 285


>gi|27377897|ref|NP_769426.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27351043|dbj|BAC48051.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 348

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 140/304 (46%), Gaps = 33/304 (10%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD  R+F  V RSGSF  AAE+L LS +++ R+I   E + G  LF R   G  LT++G
Sbjct: 24  DWDAARIFLEVVRSGSFRSAAERLSLSINAVRRRIDDFERQTGTTLFTRDVHGTHLTDEG 83

Query: 64  ----SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
               S + R+ +  +  L T+      ++   SG++R+A T  LG   L   L EF   Y
Sbjct: 84  TMVVSAVERMEAAAFDVLRTS----DSTANVLSGEVRVAVTEGLGTFWLAPRLVEFQQAY 139

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI---HMHAYAAPHYLKN 176
           P I + L    +  D+S   AD AI L +P    S +  KLV +   H+  +A+  Y++ 
Sbjct: 140 PKILVDLHCAMRSADVSRHEADVAIHLSRP----SALDVKLVRLGRMHLMFWASEKYIEK 195

Query: 177 CREPLSIQELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
              P S  EL KH L+  F D +    E F          G P    L + + +S   Y 
Sbjct: 196 HGAPRSAMELIKHRLVLQFADQL-AAKETFESFFP-----GVPERDLLVMKTNVSSANYW 249

Query: 236 VL--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +  G+GI + P Y V     L+ +  ++  P   ++  Y      +G++   R+ I   
Sbjct: 250 AVANGAGIGVFPSYAVALGGKLIPLEVELNRP-LDIWLSYH---PGSGRIPRVRHMI--- 302

Query: 294 ARDW 297
             DW
Sbjct: 303 --DW 304


>gi|288962020|ref|YP_003452330.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914300|dbj|BAI75786.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 319

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 142/289 (49%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V  + SFT AA++L+LS+S +SR+I  LE  +G +L  R  R L+LTE G  
Sbjct: 10  DDMLAFIKVVDTKSFTAAADRLNLSKSVVSRRIGELENRLGARLLNRTTRKLSLTEVGQA 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +   LE  +  + +    P G+LR+   +  G   L   + EFL  YP I+I 
Sbjct: 70  YYERCTRILADLEEAEQAVADLHAAPRGRLRLNAPVSFGILHLAPAVAEFLERYPAIEID 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+++ +D+  +  D A+R+ + ++ SSLI R+L    M   A+P YL+    P +  +
Sbjct: 130 MDLNDRTVDLVDEGYDLAVRIGR-LRDSSLIARRLAPARMALCASPAYLQKHGVPETPDD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + + + +P    D  W   VD      R+S  ++ N+   + +    G G  + 
Sbjct: 189 LADHNCLIYTN-VPN--PDL-WQFIVDGESRGIRVSGPIRSNNGDLLREAAAAGVGFIMS 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++         LV ++   I    +V   YP+    + K++ F +F+
Sbjct: 245 PTFLCGQALARGELVSVLHSHIPTEVSVNAVYPQNRHLSPKVRVFVDFL 293


>gi|194366151|ref|YP_002028761.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348955|gb|ACF52078.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 301

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 16/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R F  +   G    AAE L +S + +S+Q+  LE  +G+ L  R  R ++LTE G 
Sbjct: 4   FNLMRAFRRIVERGGLARAAEDLGMSPAGLSKQLRTLEAHLGVVLLQRTTRRMSLTETGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +  +LE  +  + E     +G+LR+        + L   L  FL  +P + +
Sbjct: 64  AYYRECCRLLDELEALERGIAEQRGDVAGRLRVNAPQSFALSTLSPLLPRFLQQHPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+++++ +D   +  D ++RLR  +  S L+ R+L ++     AAP YL+    P ++ 
Sbjct: 124 DLVMEDRLLDAVGEGFDVSLRLRAELDDSRLVARRLASLQQVLCAAPSYLQQHPAPQAVD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241
           EL  H+++ +       + D      +  P G+  I+    + VN+ L +    V G GI
Sbjct: 184 ELQAHSVLAY------SLSDSPGSWPLLGPDGQVTITLPARVTVNNSLLLRDLLVAGMGI 237

Query: 242 ALLPDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++    P L R     ++ D   P   V+  YP +     K++AF +F+
Sbjct: 238 GALPSFLAA--PALARGELQQVLPDHRYPPRFVHAVYPTSRHLQPKVRAFIDFL 289


>gi|107027487|ref|YP_624998.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693801|ref|YP_839334.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896861|gb|ABF80025.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651801|gb|ABK12441.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 307

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 148/300 (49%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF +V R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R +T+T+ G +
Sbjct: 8   DDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRVAMLEAQLGTRLLHRSTRRMTVTDAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LR++++   G++++   L +F   YP + ++
Sbjct: 68  VFARAEKILDDVDHLVEDVSTTRTVPRGTLRMSSSFGFGRHVVAPALLDFSARYPQLNVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  +R+   I +  LI R+L T H    A+P YL     P S+ +
Sbjct: 128 LDLFDRLVDVAGEGYDLDVRIGDEI-ADHLIARRLATNHRVLCASPDYLARRGTPRSLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI------MQ 233
           L  H+ +   +               D P G  R++       ++V   LS       +Q
Sbjct: 187 LTSHDCLAIKER--------------DHPFGVWRLNVRGETVTVKVGGALSTNHGEVAVQ 232

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + G GI L   +      +   L R++ D   P+  ++  YPE +  + K++   +F+
Sbjct: 233 WALAGRGIVLRSIWEAGPLIERGELCRVLPDATQPA-NIWAVYPERVAASAKVRVCVDFL 291


>gi|72383804|ref|YP_293158.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72123147|gb|AAZ65301.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 307

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 140/291 (48%), Gaps = 12/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDWD LRVF   ARS S   A+  L +SQS+ISR+I  LE + G KLF R ++GL+LT  
Sbjct: 4   FDWDNLRVFLAAARSQSTLEASHTLKMSQSTISRRIQRLERDTGSKLFERSSQGLSLTSA 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L     ++   L   +  +   ++  +G++R+ +T   G   L  +  +F   +P I
Sbjct: 64  GHRLLEHVEKLESTLSAVETAVFSDTLALTGEIRLGSTEAFGTFFLAPHSAQFCSRHPAI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++   + +++S   AD ++ + +P  ++S +  KL    +  YA   YL        
Sbjct: 124 TVDVLPMPRSLNLSKREADASVAIDRP-SANSFVTCKLSDYRLVPYATAEYLDKHPPIRK 182

Query: 183 IQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + +L  H  I + D +    + F    W+ +  RP        L+  S ++  Q    G 
Sbjct: 183 LDDLAGHRWIDYVDDLVFSPQQFMLQKWIPSC-RPF-------LRSTSAVAQAQAVKAGL 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+LP ++      LV +M D I  + T +   P   +   ++KA  +++
Sbjct: 235 GIAVLPCFLGSLIDGLVPVMLDEIHITRTFWLVAPPERREVARVKALWDYL 285


>gi|170732722|ref|YP_001764669.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169815964|gb|ACA90547.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 310

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA+ L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 9   DLEAWAIFARVAETGSFAKAADLLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G + L   L  FL  YP + 
Sbjct: 69  ELLRDRAIRLLADAELIENEASAQALEPHGLVRVNAPMSFGLHHLSPVLPAFLERYPRVD 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  S+L  R+L  +     A+P YL     P   
Sbjct: 129 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSTLRSRRLCAVRRPLVASPAYLDRRGRPTHP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L++H  +T+ +L       F   A+ D  +G      ++ N+   I+   V G G+AL
Sbjct: 188 RDLEQHVCLTYTNLPTPEYWRFRHPASGDE-VGVSVHGRIRTNNADVILPALVGGHGLAL 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++V D      L  +M D       V    P  +    ++    +F+
Sbjct: 247 QPEFLVWDELQRGALEEVMSDWKIADINVNLVTPPGMLRAARVTVLLDFL 296


>gi|186476339|ref|YP_001857809.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192798|gb|ACC70763.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 312

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YPD+ ++L
Sbjct: 66  LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQQRYPDVHLEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D A+ L + +  S L+ ++L +    A A+P YL+    P ++ +L
Sbjct: 126 TLAQRMPDLLDEGYDVALVLAQSLPDSGLVSQRLGSAFSIACASPDYLERNGVPQTLSDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    +I   M    W  T D P G+  +    S  Q+N   ++      G G+A
Sbjct: 186 RGHTCL---QMITPVMPADEW--TFDGPNGQETLHLGASTFQINVAEAMAVAVREGMGVA 240

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y       +  LV I+ + I+    VY  YP       K++ +  F+
Sbjct: 241 VLPIYSAIAGLRSGELVWILPEYISQEMNVYALYPSRQYLDAKIRTWVEFL 291


>gi|170735831|ref|YP_001777091.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818019|gb|ACA92601.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 291

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 131/283 (46%), Gaps = 7/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR+G+   AA QL++ Q+++ R+I+ LE E+  +LF R      LT  
Sbjct: 1   MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPSLYVLTTA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +     T +  +     + +G +RIATT  LG+  +   +      +  I
Sbjct: 61  GEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDTLGKRFVVPAIANLRRRHAGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  +   +  +++   AD AIR  +P +S  LI R+L  +    YA+  YL    EP++
Sbjct: 121 DVVCVTSAQITNLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRRYLAERGEPVA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D H+L+ +   +   M    W A    P    R+   Q +S + +++  + G GIA
Sbjct: 180 GSAFDGHDLVMYQQPVVPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEAALAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            LP +     P+LVR+M       F V+      L  T +++A
Sbjct: 235 ELPCFRADTEPDLVRLMPQRCN-HFDVWLVAHADLYKTARVQA 276


>gi|90023595|ref|YP_529422.1| LysR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89953195|gb|ABD83210.1| transcriptional regulator, LysR family [Saccharophagus degradans
           2-40]
          Length = 311

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 128/277 (46%), Gaps = 17/277 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   A  GSF+ AA+Q     S+IS+ +  LETE+G+ LF+R  R L LTE G +  
Sbjct: 7   LKFFIATADCGSFSGAAKQFGSDPSTISKAVRRLETELGVLLFHRTTRSLALTEAGHQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   L  T+ EL + S +P G LRI      G+  L   ++ F   YP ++  L 
Sbjct: 67  GTAKSVTESLNNTEFELADKSNEPRGTLRINAPFTYGRRYLVPAIQSFREKYPQVKFDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  IDI  +  D A+R    ++ S LI R+L  +     A+P    +     S    +
Sbjct: 127 FNDAYIDIIENRFDIALR-SGSLKDSRLIARQLSPMDFVVCASPDVAASLPADFSPMHFN 185

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           +   + F     G L+P        L  VD  I E   +  L V+   S+ + CV G+G+
Sbjct: 186 QVPWVRFRFKQTGKLMP-------ILFKVDGIIAEMECNADLVVDDGESMTELCVQGAGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           A LP + +K   D   LV +       SF ++  YP+
Sbjct: 239 AQLPHFALKADLDAGRLVPLFPSCTYSSFGIHIIYPK 275


>gi|114048816|ref|YP_739366.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113890258|gb|ABI44309.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 303

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 144/298 (48%), Gaps = 18/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE E+G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEELGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LR+A  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRMAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPAYLKARGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +EL +H+ I  G      + P        +    R +        +VNS + + Q  +  
Sbjct: 182 KELSEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV--------RVNSPIMVKQLALDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA+L +   K    N  LV I+++     F VY  Y    +    + AF +F F+K
Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISAFLDF-FVK 290


>gi|163750492|ref|ZP_02157731.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161329813|gb|EDQ00801.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 314

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 136/281 (48%), Gaps = 25/281 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F+ +  +GS   AA+ L+L +S++SR++  LE E+ +KLF+R +R +TLT  GS 
Sbjct: 4   EDIALFHRIVETGSLVDAADLLNLPKSTVSRRLQALEDELKVKLFHRQSRAMTLTASGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRI-----ATTIDLGQNLLQGNLKEFLLLYP 120
            +  T  +   LE T +EL ++  +  G LRI        +D+   +      EF+  +P
Sbjct: 64  FYDKTLAILGDLEQTLVELTDTQAEIGGHLRILMFPVPELLDIANGIF-----EFMDHHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++LI+  +  D+  +  D A  +      + ++ R+++   +H  A+P YL     P
Sbjct: 119 ELTVELIVSTEPQDMIRNNIDLAFMVEDSFNENEMVAREVINEELHFVASPDYLAKAGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC----V 236
           +  +E+++HN I F    P      N     + P G      ++ N  L+ +Q C    +
Sbjct: 179 VLPEEIEQHNSILF--RYP------NGRIFSEVPFGNDMKIAVKGNLCLNSIQLCLQASL 230

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            G GIA LP  + +   D   L  + EDV       Y  YP
Sbjct: 231 TGRGIAFLPTKLTREHVDRGELTILFEDVEPYIGKCYLVYP 271


>gi|329113564|ref|ZP_08242344.1| Putative HTH-type transcriptional regulator YafC [Acetobacter
           pomorum DM001]
 gi|326697086|gb|EGE48747.1| Putative HTH-type transcriptional regulator YafC [Acetobacter
           pomorum DM001]
          Length = 305

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 125/245 (51%), Gaps = 9/245 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  V  +G+FT AA  + LS + +++ ++ LET +G+ LF R  R L+LTE G    
Sbjct: 8   MQIFVKVVAAGNFTGAARLMALSPTMVTKHVTALETRLGVSLFQRSTRHLSLTEAGRLFL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E  +  + E   +P G+LR+   +      +   L EF   YP +Q++L 
Sbjct: 68  ESCQKILADVENMEQTVSEQYREPRGQLRLNAPVSFAIRYVAPYLPEFSRRYPQVQVELG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D  +R+R  +  S+L  RKL  + M   A+P YL+    P  + EL 
Sbjct: 128 LNDRPVDLVEEGWDLTLRIRN-LTVSTLRARKLAAVRMIICASPAYLEKAGTPTHVNELQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
           +HN + +          +++  +     GE  +S    L  N+  ++ +  V G+GIA L
Sbjct: 187 QHNCLGYTLSGNNSASRWHFGES-----GEKTVSVSGLLSANNGDALREAAVAGAGIAYL 241

Query: 245 PDYIV 249
           P ++V
Sbjct: 242 PLFVV 246


>gi|330819631|ref|YP_004348493.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327371626|gb|AEA62981.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 336

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 126/243 (51%), Gaps = 4/243 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT  G+  +
Sbjct: 7   MQVFTRVVDTNSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E T+   Q ++ KP GKLR+     LG+ ++   L EF   YPDI +QL 
Sbjct: 67  ERCVRILAEVEETEASFQINNRKPHGKLRVDMPGSLGRLVVIPALNEFRDRYPDIDLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC IR+   +Q SSL+ R++        A+  YL+   EP SI +L 
Sbjct: 127 LSDRPVDLLQEGVDCVIRV-GALQDSSLVARRVGLFEGVTVASRAYLERYGEPRSIDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +     +   + +W   +D    E ++ S + VN   + +   + G G+   P 
Sbjct: 186 DHRAVNY--FSSRTGRNIDWAFLIDGQEVEVKMESVVSVNDADAYVTCGIEGFGLIQPPL 243

Query: 247 YIV 249
           ++V
Sbjct: 244 FMV 246


>gi|302134270|ref|ZP_07260260.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|331014475|gb|EGH94531.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 301

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 136/300 (45%), Gaps = 17/300 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+  +
Sbjct: 7   MRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGTAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   EV   +  ++   +++  +P+G LRI   +  G  LL   L  F   +PD+++ L+
Sbjct: 67  QRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFPDVKLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D AIRL    QSS LI R L    +   AAP YL     P   ++L 
Sbjct: 127 LTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAAPDYLARHSAPTRPEDLR 186

Query: 188 KHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240
            HN + F    P   E       W  T   P GE  +     +  N+   + Q    G G
Sbjct: 187 AHNCLAFA--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAARAGMG 242

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           + +LPD +V+ +     LV ++ D   P   +   Y   +++  +L   R+F+      W
Sbjct: 243 VVMLPDALVQRDLQEGRLVALLPDYRLPRRPMNLLY---VQDRYRLPKLRSFVEFATAQW 299


>gi|152971493|ref|YP_001336602.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262043868|ref|ZP_06016957.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330013114|ref|ZP_08307568.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150956342|gb|ABR78372.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|259038802|gb|EEW39984.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533594|gb|EGF60311.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 288

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 139/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT +G +  
Sbjct: 1   MQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTPEGMQYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E ++  L ES  +P G+LR+     +   ++  +L +F   YPDI + + 
Sbjct: 61  AQCREILALIEHSESTLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR  + + +SSL+ R L        A+P YL+    P S + L 
Sbjct: 121 VSDRQVDLIQEGVDCVIRTGE-LNNSSLVARPLGRFRWVTCASPDYLREYGVPPSPEALS 179

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +H  + +     +  ++F ++    T   P+         VN     ++ C+ G G+A L
Sbjct: 180 QHRAVHYFSGQARRADEFRFVRHGETFSVPVS----GNAAVNETGLYIKMCLAGFGLAQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + IV D+     LV ++ D   P   V   YP     +  ++AF  ++
Sbjct: 236 AENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWM 284


>gi|332142490|ref|YP_004428228.1| putative transcriptional regulator [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552512|gb|AEA99230.1| putative transcriptional regulator [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 292

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 120/242 (49%), Gaps = 10/242 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  G+FT AA +L  S + ISR+++ LE ++G+KL +R  R ++LTE G+      
Sbjct: 10  FCAVAEVGNFTGAANKLDTSVAQISRKVASLEKQLGVKLLHRTTRSVSLTEAGTLYCEQA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 LE  Q+ +      P G +++   +  G+  +   L  F+  Y  I +Q I  N
Sbjct: 70  LPALKALEDAQLSVSALQNSPQGLIKLTAPVAFGEAFIAPLLNAFMQKYSGISVQCIFSN 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +DI     D AIR+ K ++ S+L+ +KL T H++  A+  Y K    P ++++L KH 
Sbjct: 130 EKLDIVDMGLDLAIRIGK-LEDSTLVAKKLSTRHLYVCASEQYFKENGRPKTLEDLKKHT 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           L+              W   VD+ I   P    ++ NS  ++    + G G+A LP + V
Sbjct: 189 LLVGSQPY--------WRFLVDKTIRAIPVQGRVRYNSGNALCSAAIAGLGLAQLPGFYV 240

Query: 250 KD 251
           ++
Sbjct: 241 RE 242


>gi|127513220|ref|YP_001094417.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126638515|gb|ABO24158.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 299

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 141/289 (48%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  V   GSF+ AA +L +++S++S++IS LE  +G+KL  R  R L LT+ G 
Sbjct: 4   YANIPLFVSVVELGSFSEAARRLGINKSAVSKRISALEQALGVKLIQRTTRRLHLTDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +    ++  Q  L        G L+++     GQ  +   L EF   YP I +
Sbjct: 64  QYYEYVHQAAALMQQAQDALASQQGAVQGSLKVSLPNVFGQRHIAPLLSEFSRQYPTINL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ LD++ +D+  +  D  +R+   +  SSL+  KL   H    A+P YL +   P S+ 
Sbjct: 124 EVSLDDRVVDLLKEGLDMVVRI-GDLPDSSLVAVKLAPCHSLLCASPDYLAHQSHPRSLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +          F     V R   +PR   ++VN+   I +  + G GIAL+
Sbjct: 183 DLRGHNCLFYSYFRGGLEWSFERRGEVSRI--KPR-GNIKVNNSEVIRRLLLDGMGIALM 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y+V++      LV ++ D   P+  +Y   PE      +L+ F +F+
Sbjct: 240 PRYLVEEELAAGTLVPVLSDYQAPTHGIYALTPERQHMPARLRVFIDFL 288


>gi|53718473|ref|YP_107459.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|53725114|ref|YP_102157.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67639352|ref|ZP_00438218.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|76810670|ref|YP_332454.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121601500|ref|YP_991984.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124385192|ref|YP_001028431.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126448800|ref|YP_001079665.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|254176718|ref|ZP_04883375.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254203840|ref|ZP_04910200.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254208817|ref|ZP_04915165.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254260030|ref|ZP_04951084.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254360128|ref|ZP_04976398.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52208887|emb|CAH34826.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|52428537|gb|AAU49130.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76580123|gb|ABA49598.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121230310|gb|ABM52828.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124293212|gb|ABN02481.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126241670|gb|ABO04763.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|147745352|gb|EDK52432.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147750693|gb|EDK57762.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148029368|gb|EDK87273.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160697759|gb|EDP87729.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|238519887|gb|EEP83353.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|254218719|gb|EET08103.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 294

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 140/287 (48%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++    L   +L   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W    A  D  +  PR   +  N+  + + + + G G+A +PD
Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPR--SMICNNVETRVCFAIRGRGLACVPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+D   +  L  +++  I    T +  +P     + KL+AF +FI
Sbjct: 242 FAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288


>gi|331015557|gb|EGH95613.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 313

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 142/287 (49%), Gaps = 12/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++T+ G  
Sbjct: 7   NDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDDGQV 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     V   L+  +  L      PSG+LR++  + LG+  +  +++  L  +P + + 
Sbjct: 67  LYERCVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIERCLKDWPSLSVD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    +P +  +
Sbjct: 127 ITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHPQPQTPDD 186

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H  + F   G L+P     +N+    DR +       LQ++S  S+ Q  V G GIA
Sbjct: 187 LSEHQCLHFVSGGRLLP-----WNFRVN-DRSLSVTHGGRLQMDSAESLHQSAVAGLGIA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            LP Y++ D+     LV+++ +    +  +   YP     + K++ F
Sbjct: 241 TLPSYVINDDLRSGKLVQLLAEYAEAAEPIRVIYPSKRHLSPKIRLF 287


>gi|325122859|gb|ADY82382.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 343

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 7   MKVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YPDI + + 
Sbjct: 67  DRTARILADVSDIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP SI++L 
Sbjct: 127 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 185

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           K H  I F     +   +F+W   VD  I    +   + VN   + +   + G GI   P
Sbjct: 186 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 243

Query: 246 DYIVKDN 252
            Y++ ++
Sbjct: 244 RYMLTNH 250


>gi|146338059|ref|YP_001203107.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146190865|emb|CAL74870.1| putative transcriptional regulator, LysR family [Bradyrhizobium sp.
           ORS278]
          Length = 294

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 142/297 (47%), Gaps = 11/297 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  VA    F  AA +L LS S+I+R ++GLE  +G++L  R  R +TLT+ G +
Sbjct: 5   DAMQAFVTVAELNGFAPAARRLKLSPSAITRLVAGLEEHLGVRLLQRTTRSVTLTDAGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   LE  ++      ++P G+L ++  +  G+  +   +  +L  YP++  +
Sbjct: 65  YLERVRRILTDLEEAELAAASERLQPVGRLVVSAPVGFGRLHVGPVMAAYLSRYPEVAGE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+++ I++  D  DCA+R+   +Q SSL+ R++ ++      AP Y K   EP + + 
Sbjct: 125 LRLEDRQINLVDDGVDCAVRIGH-LQDSSLVARQVGSMRRIVVGAPAYFKAHGEPRAPEA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + KH  I FG   P     F       R    PR   L  N+  + +QY   G G+  + 
Sbjct: 184 VAKHQTIQFG---PADEWQFVKEGRELRIAVSPR---LVTNNADAAIQYAEAGGGVTRVM 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            Y   +      L R+M         ++  +P +   + K++AF + +  +  +W+F
Sbjct: 238 AYQAAEMLRAGRLRRVMTKFEPAPVPIHIVFPSSRLLSAKVRAFVDLV-TETCNWRF 293


>gi|313499526|gb|ADR60892.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 298

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 144/288 (50%), Gaps = 9/288 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A++ L +S S++ ++++ LE+ +G++LF+R  R +TLT +G+     
Sbjct: 9   VFNRVAETRSFVAASQSLGISASAVGKRVARLESRLGVRLFHRSTRSITLTAEGTMFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T+ EL ++S  P G+LR+  ++     L+   L EF+ LYP +++ L   
Sbjct: 69  SRRILAEIEATEQELSQASETPRGRLRV--SMPQVTRLVMPALAEFMALYPQVELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R  +P+  S L  + L        A+P YL+    PL  ++L  H
Sbjct: 127 DRMVDIVGEGFDVVMRGGQPVD-SRLSAKFLGHFQHRLVASPEYLRERGTPLHPRDLAAH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDYI 248
             + +    P   +   W    + P     I    V +++   + + +   GI  LPD+ 
Sbjct: 186 TCLHY--RFPSNGKLETWPLRQEHPEQAYDIPISMVCNHVETRVCFALNHRGITCLPDFN 243

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           V     N +LV +++D +    + Y  +P   +   KL+ F +F+  +
Sbjct: 244 VGRELANGSLVSVLDDFMERRGSFYLLWPSGRQMPPKLRVFIDFMLAR 291


>gi|332975063|gb|EGK11969.1| LysR family transcriptional regulator [Kingella kingae ATCC 23330]
          Length = 293

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 142/297 (47%), Gaps = 20/297 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V +SGSFT AA+ L +S    S+ ++ LE  VG +L YR+ R L LTEQG +  
Sbjct: 7   MKVFCQVVQSGSFTRAADLLDISIPMASKHVAHLEKNVGAQLLYRNNRSLKLTEQGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S     L       Q  + KP G LRI+  +    +     L E+  LYPD+++ L 
Sbjct: 67  QDCSTALELLAQAAESAQAGTSKPQGLLRISAPVWFACDHFAHLLHEYQTLYPDVELMLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D++ D  D A+RL   + + ++I + L  I  +  A+P Y+    +P    EL 
Sbjct: 127 LTNQRVDLNSDGEDLALRLTHTL-ADNIIAKPLGKIPFYLAASPSYIAQHGQPTHPDELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSGI 241
           +H  +         ++ +  L+ +       RI+ LQ+N  +      +L      G+GI
Sbjct: 186 QHQAV---------LQSYVDLSQLSGEYKGQRIN-LQLNGKIRSNHTQMLASLIRAGAGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P ++  D+     L+R++ D       +Y  Y        K+++F +F+  K +
Sbjct: 236 GYIPAWLADDDLRAGRLIRLLPDCQMQDPPLYAVYANRQFMKAKVRSFIDFMAQKCQ 292


>gi|224826216|ref|ZP_03699318.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224601317|gb|EEG07498.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 293

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 130/287 (45%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AAE   LSQ  + + I  LE  +G +L  R  R   LTE G + +
Sbjct: 7   MEVFVAVVERGSFTAAAEAFGLSQPMVGKHIRALEQRLGARLLARTTRRQHLTEIGEQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  ++   +I  +     P G L+I   +  G   L   L EF++ YP++ ++L 
Sbjct: 67  QRCRHILAEIRDAEIGAERLHQAPRGMLKINAPVTFGSLRLAPALGEFMVQYPEVSVELA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  IR+   ++ S L+ R L    M   AAP YL+    P +  EL 
Sbjct: 127 LSDQVVDLVEEGCDALIRIGTLVE-SGLVARPLAPYRMMVCAAPAYLQRWGTPRTPGELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +    L  K      W         +P  +  Q N+  ++    + G GI + P+ 
Sbjct: 186 GHQWLGH-SLWEK---HAGWRLPTGADAVDPPAARFQSNNGQALRMVALQGGGIVMQPEV 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++ ++     LV I+ D +  S  ++  Y    +   KL+AF +F+ 
Sbjct: 242 LLAEDVAAGRLVEILADYLPSSKPMHVLYLPDRQQVPKLRAFIDFVL 288


>gi|190573807|ref|YP_001971652.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011729|emb|CAQ45348.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 343

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 21/306 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D ++  +F  V   GSF  AA+ L L ++++SR++  LET +G +L +R  R L LT
Sbjct: 1   MSHDLNETLIFVKVVEQGSFIAAAKSLGLPKTTVSRKVQELETRLGARLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      +G   +   L +F   YP
Sbjct: 61  EAGSIYHEHCQRIARELEEAESAVSQLQSGPRGWLRFTVPYSIGITWIAPLLGQFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIRLDMHMGNEKLDLIAGEADLALRV-GALPDSNLVARKLGSLRTQVFASPAYIERYGEP 179

Query: 181 LSIQELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLS 230
           L  +EL  H ++        G+  P+    F W   +    GE    P    +  N   +
Sbjct: 180 LHPEELQFHRILAMRKPYHTGN-SPR----FTW--QLGENGGELRDFPVTPLMTANDMSA 232

Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +    V G G+ L  D + K   ++  + R++     P       +      + K++AF 
Sbjct: 233 LNGALVCGEGLLLTGDVMAKPFVESGMVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFV 292

Query: 288 NFIFLK 293
           +F+  K
Sbjct: 293 DFLVEK 298


>gi|89073952|ref|ZP_01160458.1| Hypothetical transcriptional regulator, LysR family protein
           [Photobacterium sp. SKA34]
 gi|89050280|gb|EAR55784.1| Hypothetical transcriptional regulator, LysR family protein
           [Photobacterium sp. SKA34]
          Length = 300

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 142/285 (49%), Gaps = 8/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  ++++S +S++IS LETE+G++L YR  R LTLTE G  
Sbjct: 5   DDLVLFTQVIEHGSFSKVAELNNVTKSVVSKRISKLETELGLQLIYRTTRKLTLTEPGEV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     + H  +     ++  S   SGK+R++     G+ +L   + +F   +P + + 
Sbjct: 65  LYHRAKSINHVAQAAFDSVKGYSEALSGKVRMSVPTISGELVLAKAVSDFCQKHPGLSVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N  +D+  D  D  IR    ++ SSLI R +        A+P Y+++  +P   ++
Sbjct: 125 MSLNNHFVDLVADNYDLVIRTGY-LEDSSLIARHIFNSRWVICASPAYIEHYGKPEKPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L+ HN + +    P+    F+W       I   ++S     ++ +++ +  + G+GIA L
Sbjct: 184 LNCHNCLGYN---PQSTGPFDWQFIKQNKIYNQKVSGNFSSDNAIALKKNVLAGNGIAYL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P+ ++ D      LV ++         +Y  YP   K   +++A 
Sbjct: 241 PNCLIHDELERGELVELLSTHAGKVVGIYAVYPYTRKPAKRIQAL 285


>gi|119386012|ref|YP_917067.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119376607|gb|ABL71371.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 301

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 140/291 (48%), Gaps = 24/291 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD LR+F  VAR+GS + AA  L ++ S++ R+I   E  +G++LF R   G  LT+ G
Sbjct: 7   DWDDLRLFLAVARAGSLSGAARSLGVTHSTVFRRIGAFEARLGVRLFDRLPGGYALTQAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++      +  ++    +++     +P+G +RI TT  L   +L  ++  F   +P+I+
Sbjct: 67  EEMRDSVIRIEEEITALALKVTGQDQRPTGTIRITTTDLLAVGVLPRHVAAFRAEWPEIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++I+ +  +D++   AD A+R+  P Q  +LI R++  +   AY A       R P   
Sbjct: 127 IEVIVADTVLDLTRREADVALRIGNPGQ-ETLIGRRVGRLAFAAYGAAD-----RPPGDP 180

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            E D    I +G    P       W     +          + NS ++      +G G+A
Sbjct: 181 AEGD---WIGYGSAHGPLSRNLARWWPDARQ--------IYRTNSIIAAHAGAKVGIGLA 229

Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP  I   +P+L+R   + ED +     ++    E L+ T +++ F +F+
Sbjct: 230 ALPCVIADCDPSLIRAAALPEDFM---LDLWLLIHEDLRQTARIRLFLDFM 277


>gi|194365342|ref|YP_002027952.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348146|gb|ACF51269.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 343

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 21/306 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D ++  +F  V   GSF  AA+ L L ++++SR++  LET +G +L +R  R L LT
Sbjct: 1   MSHDLNETLIFVKVVEQGSFIAAAKSLGLPKTTVSRKVQELETRLGARLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      +G   +   L +F   YP
Sbjct: 61  EAGSIYHEHCQRIARELEEAESAVSQLQSGPRGWLRFTVPYSIGITWIAPLLGQFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIRLDMHMGNEKLDLIAGEADLALRV-GALPDSNLVARKLGSLRTQVFASPAYIERYGEP 179

Query: 181 LSIQELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLS 230
           L  +EL  H ++        G+  P+    F W   +    GE    P    +  N   +
Sbjct: 180 LHPEELQFHRILAMRKPYHTGN-SPR----FTW--QLGENGGELRDFPVTPLMTANDMSA 232

Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +    V G G+ L  D + K   ++  + R++     P       +      + K++AF 
Sbjct: 233 LNGALVCGEGLLLTGDVMAKPFVESGMVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFV 292

Query: 288 NFIFLK 293
           +F+  K
Sbjct: 293 DFLVEK 298


>gi|168235654|ref|ZP_02660712.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736666|ref|YP_002114575.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194712168|gb|ACF91389.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290987|gb|EDY30340.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 302

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 144/292 (49%), Gaps = 13/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + ++  V   GSF  AAE L L + +++R +  LE ++G+KL +R  R +++T++G +
Sbjct: 7   EAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSMTDEGEE 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  +L+  +  L  S+  P G+LR+   I L + ++   L +F   YPDI+I 
Sbjct: 67  FYQRCLLLLSELDDVR-RLFSSTQPPKGRLRLDVPITLARAVIIPALGDFQNRYPDIEIV 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DC IRL + +  SS + R+L T  M   AAP YL     P SI E
Sbjct: 126 LGTSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGTPHSIDE 184

Query: 186 LDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI-- 241
           L K H  + F       ++   W  TVD  I   ++ S + V++  + +   + G GI  
Sbjct: 185 LMKSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLAGLGILH 242

Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P    +I      L  I+ D   P   V   YP+      K++ F +++
Sbjct: 243 GLRPSLAPFIASG--ELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWL 292


>gi|33599456|ref|NP_887016.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33567052|emb|CAE30965.1| probable LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 328

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AA+ LH+S++S+++ +  LE  + ++L  R  R +  T  G+
Sbjct: 4   FDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNATADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   LE  +  L  +S  P G+LR+         +L   L  F   YPDI +
Sbjct: 64  AYYERVRQLLADLEDAETSLSGASATPGGRLRVDVPSPFASTILVPALPAFQARYPDILL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++++D+  +  DC IR  + I + SL  R +  + +  YA+P YL     P   +
Sbjct: 124 HLGVSDREVDLIDENVDCVIRGGQ-IGNLSLAARHVGDLQLGVYASPGYLARAGVPAHPR 182

Query: 185 ELD--KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL   +H +I F       L P  M   +    V    G   +   + N+YL+     + 
Sbjct: 183 ELQDAQHRIIGFSWSRARRLFPCAMRRADERIEV---AGRHALLLDEGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G+  +P Y+ +   +   L+R+  D       +Y  YP+    + KL+ F ++I
Sbjct: 237 AMGVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHVSAKLRVFIDWI 292


>gi|293609592|ref|ZP_06691894.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828044|gb|EFF86407.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 343

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 7   MKVFNKVVETNSFSLAADSLGLPRASVTTTIQALERHLQVRLLNRTTRKISLTPDGAVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YPDI + + 
Sbjct: 67  DRTARILADVSDIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP SI++L 
Sbjct: 127 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 185

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           K H  I F     +   +F+W   VD  I    +   + VN   + +   + G GI   P
Sbjct: 186 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 243

Query: 246 DYIVKDN 252
            Y++ ++
Sbjct: 244 RYMLTNH 250


>gi|190572889|ref|YP_001970734.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190010811|emb|CAQ44420.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 299

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 9/300 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D + +R+   VA + SFT AA QL LSQS +SR I  LE  +G+KL  R+ R + LT 
Sbjct: 5   SLDLNAVRMLVQVAEARSFTVAAGQLGLSQSGLSRAIGRLEATLGVKLLQRNTRNVALTP 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +     + +   L+  + +L +    PSG L+I+     G+ +L   L   L  +P 
Sbjct: 65  DGRQFVEQVAPLLAGLDDAERQLADRPCTPSGTLKISAPSMFGRKVLVPMLAPLLEQHPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++ +L ++ +D+  +  D A+R    I    ++ R L  +     A+P YL  C  P 
Sbjct: 125 LQVEAVLSDRLVDLVEEGFDAALRT-GVIADQRIVARPLRPLRWVTVASPAYLARCGAPD 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  L  H  +   +L    + D+ +L     R    P  + +  +S   +++  + G G
Sbjct: 184 DVAALQDHACLAVRNLRSGRLVDWQFLQDGQLREFTPP--TRMVFDSGDPLVEAAIAGIG 241

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  + D+ V D   +  L R+++     S  +   YP + +++ KL+   + +   A DW
Sbjct: 242 IVQVMDFAVADALADGRLQRVLQPFEGRSRALSLIYPPSRQHSPKLQVLADALL--AGDW 299


>gi|163793888|ref|ZP_02187862.1| LysR family transcriptional regulatory protein [alpha
           proteobacterium BAL199]
 gi|159180999|gb|EDP65516.1| LysR family transcriptional regulatory protein [alpha
           proteobacterium BAL199]
          Length = 274

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 131/248 (52%), Gaps = 5/248 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L++F  VAR GS   AA    L  SS+SR ++ +E E+G++LF+R  R L+LTE 
Sbjct: 1   MDLNTLQLFCDVARLGSLAAAARHRGLDPSSVSRGVAAIEAELGVRLFHRTTRTLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+        V ++LE  +  ++  S  P+G LR+  ++   Q  +   + +F   +PD+
Sbjct: 61  GAVYLSRAEAVVNELEQARDSVRAISAGPAGTLRLTASVAFAQICIVPLIHQFRDAFPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+  ++++DI  +  D AIRL  P +S  LI  +L+       A+P YL        
Sbjct: 121 KLELLATDRNLDIVAERIDLAIRL-APDRSGELIGSRLMDTRYRVVASPAYLARAPRLTQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +L KH L+ F   +P+    + +    D  I E  ++  + ++S L++ +  + G G 
Sbjct: 180 PADLSKHRLLLFD--LPEFRSAWRFRGP-DGQIVEVAVNGDVVISSALALRESALNGLGP 236

Query: 242 ALLPDYIV 249
           ALL ++++
Sbjct: 237 ALLANWLI 244


>gi|330987379|gb|EGH85482.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 303

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 9/304 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L  R  R L LT
Sbjct: 1   MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H         L     +L     +P G+LRIA   D         + +FL  YP
Sbjct: 61  QAGEDFHERCVGAVDGLMDAAEQLVSGREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A+R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIALR-GGPLQDSGYVGRQLIEEGHDSMVASPAYIAAHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P S+Q L  H  ++     P     +  L   D  + E +++     N+  ++ +  + G
Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K R
Sbjct: 237 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 296

Query: 296 DWKF 299
           D  F
Sbjct: 297 DKAF 300


>gi|77460696|ref|YP_350203.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384699|gb|ABA76212.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 301

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 136/289 (47%), Gaps = 14/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L +R  R L+LT  G+++ 
Sbjct: 7   MRVFVTVVDLGSQSAAADHLDLSRPVVSRYLAELEDWVGARLMHRTTRKLSLTTAGNEIL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++       Q  + E +  P G LRI+ +   GQ  L   +  F+  YP + I L 
Sbjct: 67  PRCRQMLDLSGDMQAAVSEPADAPRGLLRISVSTSFGQAQLADAMAAFVKAYPGVNIDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  +  D AIR    +   +LI R+L        AAP YL+   +P  +++L 
Sbjct: 127 MLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLTVCRSVVCAAPAYLQEHPQPQRVEDLS 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +HN +T   FG  +    ED         P+  P    +  N   ++++  + G+G+A+L
Sbjct: 186 RHNCLTHSYFGKSLWHFEED-------GEPVSVPVQGNISANEASTLLRATLAGAGVAML 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y+      +  LVR++        ++Y  Y         L+   +F+
Sbjct: 239 PTYLAGAHIHSGELVRLLPHAEPRQMSIYAVYASRKHMPAALRCMLDFL 287


>gi|323529427|ref|YP_004231579.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323386429|gb|ADX58519.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 307

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 147/301 (48%), Gaps = 11/301 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LRVF  VAR  SF+ AAE L +S + +S++I+ LET +G +L +R  R + +TE
Sbjct: 6   SPDLGDLRVFCEVARKASFSAAAESLSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +++    ++   ++    ++  +   P GKLRI+++   G+  +   L  F   YP 
Sbjct: 66  AGERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ +D++ +  D  IR+   I +  LI R+L + H    A+P YL     P 
Sbjct: 126 LSVRLDLFDRLVDVAGEGFDLDIRIGDDI-APHLIARRLASNHRVLCASPDYLARHGAPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + +L  H  +     I +    F  W  TV       +++  L  N     +Q+ + G 
Sbjct: 185 QLADLSSHACLA----IKERDHPFGLWRLTVRGEAASIKVTGPLSTNHGEVAVQWALAGR 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI L   + V+   D+  L +++ +   P+  ++  YP  L  + K++   +F+  +   
Sbjct: 241 GIVLRSMWDVRPLLDSGQLQQVLPEATQPA-NLWAVYPARLAQSAKVRVCVDFLSEEFAQ 299

Query: 297 W 297
           W
Sbjct: 300 W 300


>gi|153824339|ref|ZP_01977006.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|149741893|gb|EDM55922.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
          Length = 302

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 147/289 (50%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + VF  V   GSF+ AA++L +++S++S+++S LE ++GI+L  R  R L+LTE G 
Sbjct: 5   FSSIPVFVAVVECGSFSLAAKKLKITKSAVSKRLSQLEDDLGIRLINRTTRKLSLTEAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +   S+           + E   +P GKL+I   +  G   +   + +F+ +YP ++I
Sbjct: 65  RYYYHVSQALSYARQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYPKVEI 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D+     D AIR+   + +S+L+ ++LVT      A+P YL    EP    
Sbjct: 125 DLQLEDQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCKSVLCASPEYLARYGEPEKPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +          F+      + I  P+   L VN+  +I +  + G GIA L
Sbjct: 184 DLLEHNCLVYTYFRGGNEWTFHHQQQEVKVI--PK-GNLTVNNSEAIRRASLAGLGIAQL 240

Query: 245 PDYIV-KD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V KD     L  +M     P   VY  +PE      K++AF +F+
Sbjct: 241 PTFLVSKDLAGGALQSVMTHYSLPVHAVYAVFPERKHLPYKVRAFIDFL 289


>gi|94313791|ref|YP_587000.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93357643|gb|ABF11731.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 308

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 138/286 (48%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF  AAE L L +++++R I  LET +G+KL +R  R +++T  G+  +
Sbjct: 7   MQAFTRVVDVGSFARAAESLDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTTDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  L   +  P G L + TT  L Q +L  +L +F   YPD++++L 
Sbjct: 67  ERCVRILADVEEAEQSLTRHNNSPRGTLCVDTTSGLAQMVLLPHLHDFFKAYPDLKLELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++ K ID+  +  D  +R+       S++ R++  + +  YA+P YL+    P ++ EL 
Sbjct: 127 INGKPIDLLKEGVDVVLRVGA--LDESMVARRIGQLKLAFYASPIYLRRVGTPQNLTELA 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + F  L  +   +  W  +      E  + S +  N     M   + G GIA +  
Sbjct: 185 QHKAVNF--LSNRTGREMPWPLSRGGERTEVLLPSAISTNDADVYMACALEGHGIARISR 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + +   ++  LV +M D  T    +   YP+    + K++ F N+
Sbjct: 243 AMAEPYVNSGRLVEVMSDWQTDELPISAMYPQNRHLSAKVRVFVNW 288


>gi|71281213|ref|YP_270268.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71146953|gb|AAZ27426.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 307

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 16/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  ++ Y VA  GS + A   L ++ +++ R+I+ LE  + +KLF RH RG  LT+ G 
Sbjct: 6   WDDYKIAYQVALDGSLSRAGVSLRINHATVLRRINQLEQALEVKLFIRHQRGYKLTDAGC 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L     E+  K  + + +LQ      SG+LRI TT+     ++   LK F   YP I++
Sbjct: 66  VLMDEMPEMLAKFSSLENKLQNVEGDISGELRI-TTVSSFSPVITPALKAFRAKYPKIRL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI  +  + +    A  ++R         L+ + L+ +    +A   Y+    +P +I 
Sbjct: 125 KLISTDDIVPLDSGAAHVSLRAGPSPVGVDLVVKNLIKLETAYHATQDYIDEFGQPKTIN 184

Query: 185 ELDKHNLITFGDLIPKC----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           E + H  +     +P      +   N++  VD+ I + RI   Q N++  I    + G G
Sbjct: 185 EFNDHQWV-----LPTPEKYRIPFVNYI--VDK-IDKNRI-VFQSNNFSDIHDAVIAGMG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  L D+    NP++V+I  D+     +++F Y + LK++ ++++F  + FLKA
Sbjct: 236 IGPLSDHQASLNPSMVKIDLDIPKNGESIWFVYHKDLKHSARIQSF--YHFLKA 287


>gi|107026639|ref|YP_624150.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692171|ref|YP_837704.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896013|gb|ABF79177.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650171|gb|ABK10811.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 297

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 131/283 (46%), Gaps = 7/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR+G+   AA QL++ Q+++ R+I+ LE E+  +LF R      LT  
Sbjct: 7   MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPSLYVLTTA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +     T +  +     + +G +RIATT  LG+  +   +      +  I
Sbjct: 67  GEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDTLGKRFVVPAIANLRRRHAGI 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  +   +  +++   AD AIR  +P +S  LI R+L  +    YA+  YL    EP++
Sbjct: 127 DVVCVTSAQITNLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRRYLAERGEPVA 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D H+L+ +   +   M    W A    P    R+   Q +S + +++  + G GIA
Sbjct: 186 GSAFDGHDLVMYQQPVVPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEAALAGLGIA 240

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            LP +     P+LVR+M       F V+      L  T +++A
Sbjct: 241 ELPCFRADTEPDLVRLMPQRCN-HFDVWLVAHADLYKTARVQA 282


>gi|330809547|ref|YP_004354009.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377655|gb|AEA69005.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 304

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 138/299 (46%), Gaps = 15/299 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V RSGSF  AA +L +  +++SR++  LE ++  +L  R  R LTLT  
Sbjct: 2   LDLNDVALFVQVVRSGSFAEAARRLGMPSNTVSRRVQQLEAQLESRLLQRSTRKLTLTHA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    +    L     EL   S +PSG +RIA   D         + +FL  +P +
Sbjct: 62  GQGFYERCVDAVDGLMDAGQELMMGSEEPSGLVRIAAMADFFDFFPMEWVADFLAAHPRV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPL 181
           Q+  +L +  +D+  D  D A R   P+Q S  + R+L+        A+P Y+     PL
Sbjct: 122 QLDFVLSDARVDLIADRIDVAFR-GGPLQDSGYVGRQLLKNDGDGMVASPAYIAARGTPL 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRI---SCLQVNSYLSIMQYCVL 237
           S+Q+L  H+ ++FG   P  M  + ++     P G E ++   S    N+  ++ +  V 
Sbjct: 181 SLQDLAHHDGVSFGQ--PGGMAHWRFVG----PDGIEEQVQIASRFHANTAQALRRATVA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GIA+LP  +     +   LVR++       F +   YP   +    + AF   +  K
Sbjct: 235 GLGIAVLPGALSSLDLEAGRLVRVLPQYRRIGFGLNVLYPSRRQLPLAVSAFIGLVMEK 293


>gi|58040565|ref|YP_192529.1| transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58002979|gb|AAW61873.1| Transcriptional regulator [Gluconobacter oxydans 621H]
          Length = 303

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 7/247 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF+ AA  L LSQ+ +++ I+ LE+ +GI LF+R  R L+LTE G    
Sbjct: 8   MQVFAKVVAQGSFSGAARSLGLSQTMVTKHIAALESRLGISLFHRSTRKLSLTEPGRLFF 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++   LE  + E+   + +P G LR+   +      +   L EF   +P + ++L 
Sbjct: 68  IRSQKILTDLEEMEQEVSAENQEPRGLLRLNAPVSFAIRHVGPILPEFSRRHPLVTVELG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ ID   +  D  +R+ + + SS+L  R+L  +     AAP YL+    P S+ +L 
Sbjct: 128 LDDRRIDPITEGWDLTLRIGR-MPSSALRSRRLAQVDFVVCAAPSYLEEYGTPRSVADLP 186

Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  +  T GD I      F        P+  P    +  N+   + +  V G GI   P
Sbjct: 187 NHRCLGYTLGDEISSARWSFGPNGERTVPVSGP----MHANNGDILREAAVAGQGIIYQP 242

Query: 246 DYIVKDN 252
            +IV D 
Sbjct: 243 TFIVSDE 249


>gi|15598826|ref|NP_252320.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9949789|gb|AAG07018.1|AE004783_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 302

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA +G FT AAE++ +S S ISRQ++ LE  +  +L YR  R ++L+E G 
Sbjct: 4   WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     + + S +P G LR+   +  G+  +   +  F+  YP +++
Sbjct: 64  TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  S L+  +L    M+  A P YL+    P S  
Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCATPEYLRRHGTPQSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL + N +     +   +ED     T  R  G  R      NS  +++   + G G+  L
Sbjct: 183 ELGQFNCLIGSSDLWSFLEDGR--ETQHRVQGNWR-----CNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V +   +  L  ++E    P+  V+  YP+    + K++   +++
Sbjct: 236 PDYYVIEHLRSGRLASLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYL 284


>gi|21230893|ref|NP_636810.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769108|ref|YP_243870.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188992256|ref|YP_001904266.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112503|gb|AAM40734.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574440|gb|AAY49850.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167734016|emb|CAP52222.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 344

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANSLGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGAVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239
           L   EL  H  +            F W  +    + E  ++ L V +  + +   VL G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVREFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K    +  + R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGMVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|53717207|ref|YP_105988.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67643307|ref|ZP_00442054.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121596794|ref|YP_989970.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124383253|ref|YP_001024453.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126447888|ref|YP_001078126.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|167003900|ref|ZP_02269679.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254174085|ref|ZP_04880747.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254200832|ref|ZP_04907197.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254204802|ref|ZP_04911155.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254357053|ref|ZP_04973328.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52423177|gb|AAU46747.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|121224592|gb|ABM48123.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124291273|gb|ABN00543.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126240742|gb|ABO03854.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|147748444|gb|EDK55519.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754388|gb|EDK61452.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148026080|gb|EDK84203.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160695131|gb|EDP85101.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|238524623|gb|EEP88055.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243060657|gb|EES42843.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 299

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G ++ +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARMLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPTVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGAPKRPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++    G GIA
Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           LLP +   +      LVR++ D   P   +Y  Y
Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270


>gi|325923211|ref|ZP_08184891.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325546308|gb|EGD17482.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 306

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 146/288 (50%), Gaps = 9/288 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ + +  LE ++G++LF+R  R +TLT +G+     
Sbjct: 9   VFVQVAETRSFVAAGRLLGVSASAVGKHVVRLEEKLGVRLFHRSTRSVTLTAEGTLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  ++EL +++  P G+LR+  ++ L   L+   L +F+  YP+I++ L   
Sbjct: 69  SRRILAEIEAAELELSQATAAPRGRLRV--SLPLVSALVLPVLGDFMRHYPEIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R+L    M    AP+YL     P    +L +H
Sbjct: 127 DRMVDVIEEGFDAVVRTGEP-SDSRLSARRLGGFQMMLVGAPYYLAQRGTPRVPVDLLQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +    P   +   W     R  GE  + + +  N+  + + + V G GIA LPD+ 
Sbjct: 186 ACLHY--RYPNSGKLEAWPLHTRRNSGELVLPTSMICNNIETRVCFAVQGLGIACLPDFA 243

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++D   +  L+ ++ + +  S   +  +P +   + K++AF +F+  K
Sbjct: 244 IRDLLADGRLLPVLAEHVRRSGAFHVLWPASKHPSPKVRAFVDFLCAK 291


>gi|170696486|ref|ZP_02887611.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138589|gb|EDT06792.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 300

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QIETFVTVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H ++  +  +    VK SG LR++     G+  +   +  F + +PD+ I L
Sbjct: 66  LEDCQRIIHDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P S+ +L
Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLSRRGAPHSLADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +  G       +   W+   D  +   ++S  ++ +    + ++C+ G G+A   
Sbjct: 185 AQHNCLALG---ASANQQRGWMFQQDGKVVSIKVSGTMECSDGAVLHEWCLEGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGADIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|119382985|ref|YP_914041.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119372752|gb|ABL68345.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 300

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 143/303 (47%), Gaps = 35/303 (11%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L  F   A + SFT A  +L +S S++ + ++ LE E+G++LF+R  R +TLT +G 
Sbjct: 4   FGTLAAFVHSAETRSFTEAGRRLGISSSAVGKTVARLEEELGVRLFHRSTRAITLTAEGC 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       ++ + +  + EL +++ KP GKLR+     +G +L+  +L  F   +P+I++
Sbjct: 64  RFLDRCYRIFAEFDDAKRELTQAAGKPQGKLRVGLP-QIGIHLMP-HLIAFQRTFPEIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +++  +  D  +R+ + +  S L  R+L   H    AAP YL +   P    
Sbjct: 122 ELDFSDRLVNLVEEGFDAVMRIGE-LNDSRLTMRRLDGYHHRLVAAPAYLAHRGTPDRPA 180

Query: 185 ELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           EL  H  +     T G L P  +       ++D P           NS  S+++    G 
Sbjct: 181 ELMDHACLRYRYPTTGKLAPWPLNGRGGAPSIDPP------QSSVTNSIDSLLEMVQAGL 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVY----------FC--YPEALKNTGKLKAFR 287
           GIALLPD+IV D          V     TV           FC  +P +     K+KAF 
Sbjct: 235 GIALLPDFIVADA---------VAAGRLTVVLDRHGQDRRDFCILWPSSRHTAPKIKAFV 285

Query: 288 NFI 290
           +F+
Sbjct: 286 DFM 288


>gi|298717497|ref|YP_003730139.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361686|gb|ADI78467.1| Uncharacterized HTH-type transcriptional regulator ycaN [Pantoea
           vagans C9-1]
          Length = 302

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 150/291 (51%), Gaps = 13/291 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + + VF  VA S SF+ AA++LH+++S++++ IS LE  +G+ LF R  R  +LT
Sbjct: 1   MKSEMNTIPVFVAVAESVSFSQAAQKLHVTRSAVAKTISRLEERLGVTLFNRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+  +        ++   +  L+   ++ SGKLR++  + LGQ  +   L      +P
Sbjct: 61  AEGTLYYESCCRALDEINRAEDILEGGKLQVSGKLRVSVPVLLGQMCVSPILLTLAKQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++   ++  D+  +  D A+R+     SSSL+ R L +  M   A+P YL++  EP
Sbjct: 121 GLELEISFSDRPADLQDEGFDLAVRIGVLPDSSSLVARYLGSHSMVFCASPGYLRDAGEP 180

Query: 181 LSIQELDKHNLITF---GDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +S  EL++H  + +   G ++  +   + + +  +  P      +   ++   ++    V
Sbjct: 181 ISPDELNQHAAVAYIRSGRILKWRIKNEKDEITDLIPP------ARFTMDDMQAVRDITV 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            G GIA LP ++V++     +L  I++D    S+ VY  +P     T K++
Sbjct: 235 AGGGIASLPYWLVREELATGSLTEILKDRSAGSWPVYAVWPRTPHLTLKVR 285


>gi|317048408|ref|YP_004116056.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950025|gb|ADU69500.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 297

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 140/291 (48%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF   A  GSF   A+ L +S   +++ I+ LET +G  L  R  R L LT+ G + +
Sbjct: 7   MKVFVKAAELGSFAAVADMLEMSPQMVAKHIAALETRLGAALINRTTRRLHLTDIGRRYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  ++E     +      P+G +R+   +  G   L   +  +L  +P +Q++L 
Sbjct: 67  ERCRVVLAEVEEADAVVLNMQATPAGIIRVNAPVTFGSYTLAPFITRYLAAWPQVQVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ I+ + + A+  IR+ + +  S+++   L    + A AAP Y+     P +  EL 
Sbjct: 127 LSDRIINAAEEEAEVLIRIGE-LADSAMVAWPLARYRLIACAAPSYIALHGMPRTPAELQ 185

Query: 188 KHNLITFG---DLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H  + +G     +P C   F+    ++  RP G      L+ N + ++M   + G G+ 
Sbjct: 186 HHACLVYGYWSSAMP-CRWIFHKAGKIEEVRPEGR-----LRSNDWKALMHAALEGYGVT 239

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L P+ ++K+  N   LVR++ D   PS  ++   P A K T K++ F + +
Sbjct: 240 LGPEDVLKEEINKGRLVRVLPDYSGPSRPMHVLVPSARKQTTKIRCFVDAV 290


>gi|326403986|ref|YP_004284068.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325050848|dbj|BAJ81186.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 295

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 118/261 (45%), Gaps = 8/261 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD++R+F  VAR G    AA QL L+ +++ RQ+S LE E+G KLF RH  G TLT  
Sbjct: 1   MNWDRIRIFLAVARHGQILGAARQLRLNHATVGRQLSALEEELGAKLFERHTGGCTLTGA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L                 L  ++   +G +R+     LG   L   L      +P++
Sbjct: 61  GEALLLAAERAESDFLRVGSALAGTAEDVAGVVRVGAPDGLGNYFLARELGALAARHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD  I L +P Q   L+ RKL    +  YAA  YL     P+ 
Sbjct: 121 TIQLVPLPRTFSLSRREADLVITLERPKQ-GRLVVRKLTDYTLSVYAAASYLDR-HGPIR 178

Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            QE L  H  +T  + +       ++ AT+ R I      C    S +  M+    G GI
Sbjct: 179 RQEDLAGHLFVTHVEELAYS-RALDYAATLGR-IMRRHFEC---GSVVGQMEAVRAGHGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDV 262
            +L DY     P L R++ D+
Sbjct: 234 GILHDYAAIGFPELRRLVPDL 254


>gi|254524616|ref|ZP_05136671.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
 gi|219722207|gb|EED40732.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
          Length = 343

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 21/306 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D ++  +F  V   GSF  AA+ L L ++++SR++  LET +G +L +R  R L LT
Sbjct: 1   MSHDLNETLIFVKVVEQGSFIAAAKSLGLPKTTVSRKVQELETRLGARLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      +G   +   L +F   YP
Sbjct: 61  EAGSIYHEHCQRIARELEEAESAVSQLQSGPRGWLRFTVPYSIGITWIAPLLGQFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIRLDMHMGNEKLDLIAGEADLALRV-GALPDSNLVARKLGSLRTQVFASPAYIERYGEP 179

Query: 181 LSIQELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLS 230
           L  +EL  H ++        G+  P+    F W   +    GE    P    +  N   +
Sbjct: 180 LHPEELQFHRILAMRKPYHTGN-SPR----FTW--QLGENGGELRDFPVTPLMTANDMSA 232

Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +    V G G+ L  D + K   ++  + R++     P       +      + K++AF 
Sbjct: 233 LNGALVCGEGLLLTGDVMAKPFVESGMVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFV 292

Query: 288 NFIFLK 293
           +F+  K
Sbjct: 293 DFLVEK 298


>gi|254000178|ref|YP_003052241.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253986857|gb|ACT51714.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 312

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 149/286 (52%), Gaps = 7/286 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ ++ F  V    SFT AA  L+L +++IS Q+  LE  +G+KL  R  R +++T  G+
Sbjct: 4   FEAMQAFTRVVELASFTKAALSLNLPKTTISAQVQALENRLGVKLLNRTTRHVSVTTDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     + ++LE T+  L++++ +PSG+LR+     +G+ +L   L +F   YPDI +
Sbjct: 64  AYYERAVALLNELEETEAALRQATSRPSGRLRVDVPGSIGRRILIPALADFTEKYPDIIL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +++ +D+  +  DC IR   P+   SL+ R++ ++     A P YL+    P+  +
Sbjct: 124 EMGCNDRPVDLLEEGVDCVIRGGDPLD-QSLVARRVASLRFVTCATPGYLRKHGIPMQPR 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L++H  I +       + +F++    +R  +   R   +  N   + +  C+ G G+  
Sbjct: 183 DLERHTGIHYFSSKTGKVYEFDFERDGERYEVSSHRK--MIFNDGDACLAACLAGLGVFQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              ++V++   +  L  ++   ++ +  +Y  YP+    + K++AF
Sbjct: 241 AATFMVQEHIASGELQVVLGTHLSENLPLYVLYPQNRHLSSKVRAF 286


>gi|192359439|ref|YP_001984195.1| transcriptional regulator [Cellvibrio japonicus Ueda107]
 gi|190685604|gb|ACE83282.1| transcriptional regulator [Cellvibrio japonicus Ueda107]
          Length = 300

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 144/301 (47%), Gaps = 17/301 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  VA   SFT AA+ L L ++S+S  +  LE+ +G +L  R  R + LT+ G  
Sbjct: 5   DAMLMFVRVAELASFTKAADSLGLPKASVSTGVQQLESLLGARLLQRTTRRVQLTQDGRV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +E  +   Q+ +   SG+LR+     L +N++   L  FL L+P +Q++
Sbjct: 65  FYERARDLLADMEDLEGLFQQGASNLSGRLRVDMPNGLAKNIVLPRLPAFLALHPQLQLE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC IR+ K +  SSLI R L  + +   A+P YL +   P ++ +
Sbjct: 125 ISSTDRRVDVIREGFDCVIRVGK-LSDSSLIARPLGKLKLLNCASPAYLASHGSPHTLAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239
           L +H L+ +   +      F +       + E    C+ +   +++         C+ G 
Sbjct: 184 LAQHQLVHYVTTLGARSAGFEY-------VQEGETHCIAMGGNITVNNSDAYSAACLAGV 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA +P   V+    +  LV I+ D    +  V   YP       +++ F +++  + RD
Sbjct: 237 GIAQIPRIGVQPYLADGRLVEILPDYCAEAMPVSLIYPARRHLPRRVQGFMDWVSEQLRD 296

Query: 297 W 297
           +
Sbjct: 297 Y 297


>gi|152989350|ref|YP_001348304.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964508|gb|ABR86533.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 297

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 146/287 (50%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR+  ++ L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPALADFMQTYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPGYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
             + +       +E+  W   + R  GE  P+I    V N+  + + + +   GIA LPD
Sbjct: 186 TCLHYRFSSTGRLEE--W--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++      LV +++         +  +P   + + KL+AF +F+
Sbjct: 242 FSIREALREGRLVSVLDAFCERRARFFLLWPSGRQVSPKLRAFIDFV 288


>gi|78064018|ref|YP_373926.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971903|gb|ABB13282.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 307

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 149/300 (49%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE G +
Sbjct: 8   DDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++    ++   ++    ++  +   P G LRI+++   G++++   L +F   +P + ++
Sbjct: 68  VYARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHIVAPALLDFTARFPQLNVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  +R+   I S  L+ R+L   +    A+P YL     P S+ +
Sbjct: 128 LDLFDRLVDVAGEGYDLDVRIGDEI-SDHLVARRLAANYRVLCASPDYLARRGTPRSLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233
           L  H+ +   +               D P G  R+      + ++V   LS       +Q
Sbjct: 187 LASHDCLAIKER--------------DHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQ 232

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + G GI L   +      +   L R++ D I P+  ++  YPE +  + K++   +F+
Sbjct: 233 WALAGRGIVLRSIWEAAPLIERGALCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFL 291


>gi|254252634|ref|ZP_04945952.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124895243|gb|EAY69123.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 307

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 133/290 (45%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA+ L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAKAADLLGVSQPTVSKAIARLEKRLGAMLLYRTSRRLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAERIESEASAHALEPHGLVRVNAPMSFGVRHLAPVLPAFLERYPHVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     AAP YL     P   
Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LNDSSLRSRRLCAVRRPLVAAPAYLDRHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++++H  +T+ +L       F   A+ +  +G      ++ N+   I+   V G G+AL
Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRHTASGEE-VGVSVQGRIRTNNADVIVPALVAGHGLAL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++V D      L  +M D       V    P  +    ++     F+
Sbjct: 244 QPEFLVWDALQRGELEEVMRDWKIADINVNLVTPPGMLRAARVTVLLEFL 293


>gi|299533709|ref|ZP_07047081.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718258|gb|EFI59243.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 287

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 20/289 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +   GS   AA+ L LS +++S+Q+  LE ++G  L  R  R ++LT+ G   +
Sbjct: 1   MRAFRRIVELGSIARAADALDLSSAALSKQLRALEAQLGAVLIQRTTRRMSLTDTGRAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +T +  ++  S++ +G+LR+   +    + L   L  F+  +P +QI L 
Sbjct: 61  AECCRLLDDFDTLEQSVRAQSLQVTGRLRVNAPLSFALSTLAPLLARFMQRHPQLQIDLS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D      D +IRL   +  SSLI R+L ++     A+P YL+    P S+  L 
Sbjct: 121 MEDRLMDAVGQGFDVSIRLSAELADSSLIARRLASLSQMLCASPAYLQQHGRPASVAALR 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+ +             LA VD  +  P  +   VN+ L + +  V G GI  LP +
Sbjct: 181 GHALLNYS------------LAQVDDGLQVPSEARASVNNSLMLRELLVAGLGIGALPSF 228

Query: 248 IVKDNPNLVR------IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +  P + +       ++D       VY  YP       K++AF +F+
Sbjct: 229 LAR--PAIAQGQLEALALQDWAEQPRHVYVVYPTQRHLLPKVRAFVDFL 275


>gi|296158939|ref|ZP_06841767.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295890814|gb|EFG70604.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 334

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 136/288 (47%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R LTLT +GS  
Sbjct: 40  QIETFVTVAAKGSLSAAASAEGVAPAIIGRRIDALEERLGVKLLVRTTRKLTLTFEGSAF 99

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H+++  +  +    VK SG LR++     G+  +   +  F + +PD+ I L
Sbjct: 100 LEDCQRIIHEMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 159

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P S+ +L
Sbjct: 160 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPTYLSRRAAPHSLADL 218

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
             HN +  G       +   W+   D  +   ++S  ++ +    +  +C+ G G+A   
Sbjct: 219 AHHNCLALG---ASANQQRGWMFQQDDKVVSIKVSGTMECSDGAVLHDWCLEGYGLAWRS 275

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 276 WWEVGTDIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 323


>gi|325914016|ref|ZP_08176372.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325539785|gb|EGD11425.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 344

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239
           L   EL  H  +            F W  +    + +  ++ L V +  + +   VL G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K      LV R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|221067348|ref|ZP_03543453.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220712371|gb|EED67739.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 308

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 142/289 (49%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V  +G+FT AA+ L + ++S+++ +  LE  + +KL  R  R +T+T  G+  +
Sbjct: 7   MRIFARVVEAGTFTRAADSLQMPKASVTKNVQALEERLRVKLLNRTTRRVTVTADGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +  +  + ++   P G+LR+     + + L+  +L EF   YP+IQI L 
Sbjct: 67  DRAVRLLADFDDLEASVSQARTTPRGRLRVDVGTTVARLLIIPHLSEFQSRYPEIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR  + +   SL+ R++  +     AAP YL+    P   ++L+
Sbjct: 127 VSDRTVDLISDNVDCVIRGGE-LSDQSLVARRIGNLEFITVAAPDYLQRHGVPRHPRDLE 185

Query: 188 K--HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
               N+I F  +  +    +F+    V        +   + N+Y+S +   + G GI  L
Sbjct: 186 SGHRNVIYFSPVSARRYPLEFHKGGEVIEIASPAHLGINEGNAYISAI---LAGQGIGQL 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + +    +N  L R++ED   P   +Y  YP     + K++AF +++
Sbjct: 243 SRFQIHKYLENGQLQRVLEDWKHPLLPIYVVYPPNSHLSAKVRAFVDWV 291


>gi|21242232|ref|NP_641814.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107655|gb|AAM36350.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 344

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239
           L   EL  H  +            F W  +    + +  ++ L V +  + +   VL G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K      LV R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|217418713|ref|ZP_03450220.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217398017|gb|EEC38032.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 299

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPTVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGVPKRPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++    G GIA
Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           LLP +   +      LVR++ D   P   +Y  Y
Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270


>gi|91792127|ref|YP_561778.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91714129|gb|ABE54055.1| LysR, substrate-binding [Shewanella denitrificans OS217]
          Length = 299

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 129/277 (46%), Gaps = 18/277 (6%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR   +F  +A  GSFT  AEQ + S+S +S++IS LE ++G +L +R  R + LT  
Sbjct: 2   DKLRGMQLFVRLADLGSFTRVAEQTNSSKSMVSKEISRLEADLGARLLHRSTRNVQLTPV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+  KL   +   Q+  +   GKL+I   + LG   L     +F+  +P+I
Sbjct: 62  GEGYLVRAREILAKLADAESFAQDQQLNLRGKLKINAPMALGITDLSSLFADFMQAHPEI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ ID+     D   R       S+ + R L        A+P YLK      S
Sbjct: 122 ELDIHLGDESIDLVEQGFDLGFRASSTPIDSNYVGRALTAFTYRVCASPDYLKQHPSIDS 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSG 240
            ++L  HN   +     K +    W      PI  G      LQVNS L +M+    G G
Sbjct: 182 PEDLQAHNCFVYSYFHGKNI----W------PIEDGVAVKGNLQVNSTLFMMESIKKGLG 231

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           +  +PD++ +   D+  +V ++ D   P  T+Y  YP
Sbjct: 232 LGFIPDFVCQQAIDSGQVVEVLADAKKPKLTLYALYP 268


>gi|49084700|gb|AAT51224.1| PA3630 [synthetic construct]
          Length = 303

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA +G FT AAE++ +S S ISRQ++ LE  +  +L YR  R ++L+E G 
Sbjct: 4   WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     + + S +P G LR+   +  G+  +   +  F+  YP +++
Sbjct: 64  TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  S L+  +L    M+  A P YL+    P S  
Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCATPEYLRRHGTPQSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL + N +     +   +ED     T  R  G  R      NS  +++   + G G+  L
Sbjct: 183 ELGQFNCLIGSSDLWSFLEDGR--ETQHRVQGNWR-----CNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V +   +  L  ++E    P+  V+  YP+    + K++   +++
Sbjct: 236 PDYYVIEHLRSGRLASLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYL 284


>gi|126443372|ref|YP_001062263.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|134279056|ref|ZP_01765769.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167827719|ref|ZP_02459190.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|226197646|ref|ZP_03793221.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254193149|ref|ZP_04899584.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|126222863|gb|ABN86368.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|134249475|gb|EBA49556.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|169649903|gb|EDS82596.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|225930255|gb|EEH26267.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 299

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGVPKRPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++    G GIA
Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           LLP +   +      LVR++ D   P   +Y  Y
Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270


>gi|322834500|ref|YP_004214527.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169701|gb|ADW75400.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 302

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 136/292 (46%), Gaps = 20/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA +  L +SS+S +IS LE  VG++L  R  R L LT  G +  
Sbjct: 8   MALFALVAECGSFTQAASRAGLPKSSVSHRISQLEKSVGLRLLNRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E  ++ ++     PSG+LRI +   LG  LL     EF   YPD+ +++ 
Sbjct: 68  IHCQEMMQASERAELAIRRLRDNPSGRLRITSPAGLGATLLARMNVEFQKRYPDVSLEVS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  +  D A+R  KP Q SSLI R+L     +  A+P YL       S Q+L 
Sbjct: 128 VSDALVDLVQEGFDIALRTGKP-QDSSLIGRELGHSPRYLLASPAYLAQHPSLDSPQQLA 186

Query: 188 KHNLI---TFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242
            H+ I    + + +    + ++ WL           +        L   + C L G+GI 
Sbjct: 187 SHHCIAHRAWSEWVLHRGDTWHRWL-----------LPAAHTTDNLLYARECALAGAGIT 235

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LLP ++  D      LVR++ +       +Y  YP    N+  L  F  F+ 
Sbjct: 236 LLPAFLCHDEVAKGTLVRVLPEWEAEGNDLYLVYPGRKLNSPALACFIEFML 287


>gi|227114220|ref|ZP_03827876.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 301

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 139/288 (48%), Gaps = 11/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  V  +GSF  AAE +H+  S+++R I  LE+ +G +LF R  R L++T+ G 
Sbjct: 4   FQAMEIFMRVVDAGSFKKAAETMHVLPSTVTRSIKELESHLGARLFNRTTRALSITDVGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +   +   +    +   +  G +RI  T  L +N L   L  F   YP I++
Sbjct: 64  RYYDSCKAILRDVHAAESVAAQQKEELHGTIRIGATPSLVKNFLIPALSGFCERYPGIKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L +  +DI  +  DC IR  +P   S L+ R+L   H +  A+P YL+    P +++
Sbjct: 124 DFHLGDATVDIVQNGIDCVIRTGEP-PLSRLVARRLGAFHWYICASPRYLEQHGHPTTLE 182

Query: 185 ELDKHNLI--TFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            L+KH  +  T          DF+  A T   PI   +IS    ++Y++     V G G+
Sbjct: 183 SLNKHAAVGYTHSRTGRSTRWDFHDGAHTAAMPIAA-QISVNDTDAYVAA---GVAGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +  Y+V     + +LVR++  +  P   ++  YP++   +  ++AF
Sbjct: 239 IRIASYMVHQQLADGHLVRLLPGISAPLEPIFILYPQSRHLSPAIRAF 286


>gi|78066828|ref|YP_369597.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967573|gb|ABB08953.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 307

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 130/273 (47%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 12  QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 V + ++  +  +    VK SG LRI+     G+  +   + EF + +PD+ + L
Sbjct: 72  LEDCQRVINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSVGHPDVSVTL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ EL
Sbjct: 132 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R++  ++ +    + ++C+ G G+A   
Sbjct: 191 ARHNCLA---LAANANQQRGWAFQEDDKVVSIRVNGTMECSDGAVLHEWCLDGHGLAWRS 247

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + V D+     LV +++    P   ++  +P+
Sbjct: 248 WWEVGDDIAAGRLVSVLDAFAAPPIGIHAVFPQ 280


>gi|116050260|ref|YP_790923.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585481|gb|ABJ11496.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 297

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 146/287 (50%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR+  ++ L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPTLADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPTYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
             + +       +E+  W   + R  GE  P+I    V N+  + + + +   GIA LPD
Sbjct: 186 TCLHYRFSNTGRLEE--W--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++      LV +++         +  +P   + + KL+AF +F+
Sbjct: 242 FSIREALREGRLVSVLDAFCERRARFFLLWPSGRQVSPKLRAFIDFV 288


>gi|53721886|ref|YP_110871.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|52212300|emb|CAH38323.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
          Length = 299

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGVPKRPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++    G GIA
Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           LLP +   +      LVR++ D   P   +Y  Y
Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270


>gi|91783841|ref|YP_559047.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687795|gb|ABE30995.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 355

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 132/285 (46%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE GS   
Sbjct: 7   MRVFVKVADLGSFVGAAGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGSTYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +  +   + +P G LRI   +  G + L   ++ +   YPD+   + 
Sbjct: 67  ERVRHILDDLEGVEQMVVARNHEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVPDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  I + + ++ +S++ R+L T  M   A P YL     P   + L 
Sbjct: 127 LADRHVDLVEEGFDVGILVARHMRGASIVTRRLTTGFMTVCATPAYLAQHGTPTRPEHLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
            H  ++      +  E          P GE R+   + +  N+   + Q+ +LG G+A+L
Sbjct: 187 AHPCLS------RPAEQGGEERVFAGPDGEVRVRPTNAIVANNAEMLRQFALLGMGVAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y++  +     LV ++ +   P   +   YP  L    K++ F
Sbjct: 241 PSYLIGRDLASGRLVPLLSNYRLPQIEITIAYPSRLHLPAKVRTF 285


>gi|78047094|ref|YP_363269.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|294626581|ref|ZP_06705179.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|325928736|ref|ZP_08189906.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|78035524|emb|CAJ23170.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|292599148|gb|EFF43287.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|325540904|gb|EGD12476.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 344

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239
           L   EL  H  +            F W  +    + +  ++ L V +  + +   VL G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K      LV R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|303250066|ref|ZP_07336268.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307246101|ref|ZP_07528183.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307252826|ref|ZP_07534716.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|157837301|gb|ABV82728.1| LysR [Actinobacillus pleuropneumoniae]
 gi|302651129|gb|EFL81283.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306853036|gb|EFM85259.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306859725|gb|EFM91748.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 297

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 145/303 (47%), Gaps = 25/303 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           ++VF +VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+ G    
Sbjct: 7   IQVFLMVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66

Query: 65  ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               K+  +TS +     T + EL+       G LRIA+    G   L   ++ FL  +P
Sbjct: 67  EYCKKMTELTSAIEQDFLTQRGELR-------GSLRIASNAAFGSTHLLNAIRTFLAKHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQLIL +  +++  +  D A+R       ++ + R L T H    A P YL      
Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNNPDPNA-VARPLFTCHSLLVATPAYLTQHGTI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S QEL  H  +   ++  K   ++ ++      + E   S L +N   +++ + +   G
Sbjct: 179 HSPQELANHRYLAHANVNRK---EWTFIKGGQETVLE-LTSQLTINDTGALLNFTLADGG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           IA+LP Y ++    N  L  ++ D   P++ VY  YP   + +  +++F +F+   F   
Sbjct: 235 IAMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLSQAVRSFVDFLVEEFEGK 294

Query: 295 RDW 297
           RDW
Sbjct: 295 RDW 297


>gi|194292732|ref|YP_002008639.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193226636|emb|CAQ72587.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 302

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 134/287 (46%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D+ RVF  VA  GSF  AA  L L ++S+S  +  LE +VG +L +R  R + L+  G+
Sbjct: 4   FDQYRVFLQVAEMGSFIKAAHALGLPRASVSAAVQDLEAQVGARLLHRTTRQVRLSADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +  ++E      Q    + SG+L +     + + L+   L   L  +P +Q+
Sbjct: 64  QLLERLRPLLAEVEDIDQLFQAGQRQASGRLNVDMPSRIARRLVAPALPALLRRHPRLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+  +  DCA+R    +  SSL+ R L  I +   A+P YL+   EP    
Sbjct: 124 SLGSSDRAIDLVQEGVDCAVRFGM-LADSSLVVRPLGRIALVNCASPAYLREHGEPRDPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L + +L   G   P+   D  W  + T     G    + + VN+  S +  C+ G G+ 
Sbjct: 183 DLRRGHL-AVGYASPRTGRDLPWEFVDTDGSAHGADVATRVSVNNAESYIACCLAGIGMI 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P + V+   D   L+ IM D    S  V   YP   + + +L  F
Sbjct: 242 QIPRFDVQHLLDTGQLLEIMPDWRPASMPVSLLYPHRRQRSQRLAVF 288


>gi|294665670|ref|ZP_06730946.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604565|gb|EFF47940.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 344

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239
           L   EL  H  +            F W  +    + +  ++ L V +  + +   VL G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K      LV R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|259416519|ref|ZP_05740439.1| LysR substrate binding domain protein [Silicibacter sp. TrichCH4B]
 gi|259347958|gb|EEW59735.1| LysR substrate binding domain protein [Silicibacter sp. TrichCH4B]
          Length = 304

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 140/295 (47%), Gaps = 10/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR GSFT AA+++++S S++S+ I  LE  + I+L  R  R ++LTE GSKL 
Sbjct: 9   LAAFAQVARDGSFTRAADRMNISTSALSQSIRSLENRLAIRLLNRSTRSISLTEAGSKLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +        +E       ++  +P G +RI  +      LL+ +L EF  L PD+++ + 
Sbjct: 69  KQIEPALSMIENGMASALDADNRPEGLVRINASRVAANYLLEPHLGEFHQLCPDVELDIF 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+   DI  +  D  IRLR  +  S +       I M   A P Y      P +  +L 
Sbjct: 129 IDDSFEDIVREGFDAGIRLRDGVVDSMVAIPISPPISMAVVATPTYFAANPPPQTPDDLT 188

Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +HN I F  G  I     +F+   T    + EP+ S    N    ++   + G G+ +  
Sbjct: 189 RHNCIGFRHGKNIQISPWEFDNPTTGAEILFEPKGS-FATNGDELMLSAALQGVGLVMHF 247

Query: 246 DYIVKD---NPNLVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           D++V+    +  LVR+++    P   F +Y    E +    +L+A  +F+  K R
Sbjct: 248 DFVVQKQLTSGELVRVLKPWCKPFDGFDIYLPSREHMPT--RLRALIDFLTAKRR 300


>gi|238896067|ref|YP_002920803.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548385|dbj|BAH64736.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 294

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 138/286 (48%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT +G +  
Sbjct: 7   MQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTPEGMQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E ++  L ES  +P G+LR+     +   ++  +L +F   YPDI + + 
Sbjct: 67  AQCREILALIEHSESTLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR  + + +SSL+ R L        A+P YL+    P S + L 
Sbjct: 127 VSDRQVDLIQEGVDCVIRTGE-LNNSSLVARPLGHFRWVTCASPDYLREYGVPPSPEALS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + +     +  ++F ++   +     P      VN     ++ C+ G G+A L + 
Sbjct: 186 QHRAVHYFSGQARRADEFRFVRHGET-FSVPVSGNAAVNETGLYIKMCLAGFGLAQLAEN 244

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IV D+     LV ++ D   P   V   YP     +  ++AF  ++
Sbjct: 245 IVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWM 290


>gi|170293884|gb|ACB13019.1| putative LysR family transcriptional regulator [Hydrogenophaga sp.
           PL2G6]
          Length = 319

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 142/290 (48%), Gaps = 16/290 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LHL+++S+++ I  LE  + +KL  R  R + +T +G+
Sbjct: 4   FDAMQAFVRVVDAGSFTKAAETLHLNKTSVTQLIQQLEARLRVKLLNRTTRKVQVTAEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +  L ++   P G+LR+     L + +L   L  F   YPDIQI
Sbjct: 64  AYYERVVRLLADLDDAETSLSDARTAPRGRLRVDVPSPLARFVLVPALSGFHARYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  D  DC IR  + I   SLI R +  + + AYAAP YL+    P   +
Sbjct: 124 DMGVSDRIMDLISDSVDCVIRGGE-ITDPSLIARLVGELPIKAYAAPGYLQRHGTPEHPK 182

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           +L+   H ++ F     G + P  M+  +      R  G   ++    N+YL+     + 
Sbjct: 183 DLEHSHHRVVGFLSTRNGRVPPFSMQLGDGERIDVR--GHHVVAIDDGNAYLAA---GLA 237

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G G+  LP Y+ +D+     LV + ++       +Y  YP     + KL+
Sbjct: 238 GLGVLRLPTYMARDHVARGELVTLFDEWSFEPMPLYLAYPPNRYVSAKLR 287


>gi|330963660|gb|EGH63920.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 301

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 133/292 (45%), Gaps = 14/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+  +
Sbjct: 7   MRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGTAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   EV   +  ++   +++  +P+G LRI   +  G  LL   L  F   +PD+++ L+
Sbjct: 67  QRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFPDVKLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D AIRL    QSS LI R L    +   AAP YL     P   ++L 
Sbjct: 127 LTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAAPDYLARHSAPTRPEDLR 186

Query: 188 KHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240
            HN + F    P   E       W  T   P GE  +     +  N+   + Q    G G
Sbjct: 187 AHNCLAFA--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAARAGMG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + +LPD +V+    +  LV ++ D   P   +   Y +      KL++F  F
Sbjct: 243 VVMLPDALVQRDLQDGRLVALLPDYHLPRRPMNLLYVQDRYRLPKLRSFVEF 294


>gi|289662995|ref|ZP_06484576.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 344

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239
           L   EL  H  +            F W  +    + +  ++ L V +  + +   VL G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K      LV R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|332524256|ref|ZP_08400480.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332107589|gb|EGJ08813.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 304

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 133/293 (45%), Gaps = 18/293 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS T AA+   ++ + + R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QIESFVAVATKGSLTAAAQAEGVAPAVVGRRIDALEERLGVKLMLRTTRRITLTHEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +V   L   +  +    VK SG LRI      G+  +   +  F+  +PD+ + L
Sbjct: 66  LEDCQKVLADLGNAEASVSAGGVKASGHLRITAPAGFGRRHVAPLVPSFMAEHPDVSLSL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +DI  +  DCAIR+   +  SSL+  +L        A+P YL+    P +  +L
Sbjct: 126 NLSDRVVDIVNEGFDCAIRVGD-LADSSLVSVRLADNRRLCVASPRYLQRAGVPRTPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +H  +T   L     +   W   VD      RP G    S  QV     +  +C  G G
Sbjct: 185 ARHECLT---LSSDASQTRGWAFLVDGQVQHLRPTGRLDCSDGQV-----LHAWCRAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V+ +     LV ++E+   P   +Y  +P+      +++ + +F+
Sbjct: 237 IAWRSTWEVQQDIASGQLVAVLEEFSAPPNGIYAVFPQRRLLPLRVRLWIDFV 289


>gi|238911787|ref|ZP_04655624.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 302

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 143/292 (48%), Gaps = 13/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + ++  V   GSF  AAE L L   +++R +  LE ++G+KL +R  R +++T++G +
Sbjct: 7   EAMNIYVNVVEQGSFIRAAEVLELHCPAVTRAVQNLEHDLGVKLLHRTTRQVSMTDEGEE 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  +L+  +  L  S+  P G+LR+   I L + ++   L +F   YPDI+I 
Sbjct: 67  FYQRCLSLLSELDDVR-RLFSSTQPPKGRLRLDVPITLARAVIIPALGDFQNRYPDIEIV 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DC IRL + +  SS + R+L T  M   AAP YL     P SI E
Sbjct: 126 LGTSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGTPHSIDE 184

Query: 186 LDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI-- 241
           L K H  + F       ++   W  TVD  I   +I S + V++  + +   + G G+  
Sbjct: 185 LMKSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKIPSSILVDNSEAFLSCGLAGLGVLH 242

Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P    +I      L  I+ D   P   V   YP+      K++ F +++
Sbjct: 243 GLRPSLAPFIASG--ELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWL 292


>gi|227113957|ref|ZP_03827613.1| Regulatory protein, LysR family (Azotobacter vinelandii DJ)
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 298

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 143/285 (50%), Gaps = 9/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ + I+ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVQVAETRSFVAAGRLLGVSASAVGKSIARLEEKLGVRLFHRSTRSITLTAEGSLFLAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  ++EL ++S  P G+LR+  ++ L  +L+   L +F+  YP+I++ L   
Sbjct: 69  SRRILAEIEAAELELSQTSAVPRGRLRV--SLPLVSSLVLPVLGDFMHKYPEIELDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R   P+  S L  R+L T      AAP YL     P +  +L +H
Sbjct: 127 DRMVDVIEEGFDAVVRTGDPVD-SRLTARRLGTFRFLVVAAPEYLAQSGCPQTPADLMQH 185

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +    P   +   W L         P  + +  N+  + + + + G GIA LPD+ 
Sbjct: 186 ACLHY--RFPNSGKLEPWALRLPPGEPELPLPTSMICNNIETRVCFALQGLGIAYLPDFS 243

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++      L  I+ D +  S   Y  +P +   + K++A  +F+
Sbjct: 244 IRELLAEGQLQPILTDYVERSGVFYVLWPSSKHPSPKVRALVDFL 288


>gi|115352689|ref|YP_774528.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282677|gb|ABI88194.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 294

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 135/282 (47%), Gaps = 11/282 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S+I ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              V  +++  + EL  S+  P G+LR++  TI     LL   L +F+  YP+I++ +  
Sbjct: 69  CRRVIAEIDAAEQELTHSAEAPRGRLRVSLPTIG---TLLLPLLADFMAAYPEIELDIDF 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  +  D  +R  +P   S L  R L     H  A+P YL+    P +  +L +
Sbjct: 126 SDRLVDVVEEGFDAVLRTGQPTD-SRLSSRLLGHFGQHLVASPDYLERHGTPRTPTDLAR 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  + +    P   +   W     R    P +    V NS  + + +   G GIA LP++
Sbjct: 185 HRCLHY--RFPSSGKLEIWPLRASRSGTPPAVPVSMVSNSAETRLCFARRGLGIACLPEF 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            V+   D+  L  ++ + I      Y  +P     T KL+AF
Sbjct: 243 FVRDALDDGTLRAVLAEHIVSRTPFYVLWPSGRHPTPKLRAF 284


>gi|300312300|ref|YP_003776392.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075085|gb|ADJ64484.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 305

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 24/294 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  WD +R F  ++R GS + +A  L +  S+++R +  LE  + +KLF R ARG  LT 
Sbjct: 22  TLQWDDVRYFLTLSREGSLSASARVLKVEHSTVARHVGNLEKTLRVKLFDRLARGWVLTT 81

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLL 118
           +G++L    S+   +LE     L  +++     SGK+R++    L  + L   L  F   
Sbjct: 82  EGAEL----SKQAEQLEVEMHSLWRAALANTTLSGKVRVSAPPILMSDFLVPRLPAFQEK 137

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YPDI++++I + + +D++   AD A+R+ +P+ S  L+ R L  +    Y  P +L+   
Sbjct: 138 YPDIELEVIGEARGVDLTRGEADIALRMGEPV-SPLLVARMLCNVSYSVYGIPAWLERPE 196

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVL 237
              S   LD+ +          C +   WL + VD+     R   L+ N   ++    + 
Sbjct: 197 SERSFIGLDQES---------PCRQK-AWLESQVDQ-----RRYALRTNDIRAMCHAAMS 241

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+ALLP ++V ++  LV I      P   +Y      ++   +++A  +F+ 
Sbjct: 242 GIGLALLPRFMVAEDTRLVAIPMPETPPPCPLYLVMHSDVRRAPRIRATADFLI 295


>gi|295688180|ref|YP_003591873.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295430083|gb|ADG09255.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 295

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 129/281 (45%), Gaps = 7/281 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F VV R GS + AA  L ++Q S++R I  LE  VG KLF R  RGL+ T++G 
Sbjct: 7   WDLFRTFAVVLREGSLSGAARVLGMTQPSVARHIDALEAAVGAKLFVRSQRGLSPTDRGL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L R  +E         +     +   SG +RI  +  +G   L   L      +P + I
Sbjct: 67  AL-RSHAESLVATSAALLRAASGTEGASGTVRITASEVVGAEHLPPILAALRRAHPALAI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L N   D+    AD A+R+ +P Q  +L+ RK+  + +  +A   YL     P + +
Sbjct: 126 ELVLSNAVSDLLQRQADIAVRMVEPTQ-QALVARKVGAVTLGFHAHRDYLAARGVPRTAE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+LI      P      + +  + R         L+ +S L+ +     G GI + 
Sbjct: 185 DLLAHDLIGVDTETPAVRAVLSRMPGLTR-----EAFGLRTDSDLAQLAAIRAGYGIGVC 239

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
              I + +P LVR+  D+ +    ++    E L+   + +A
Sbjct: 240 QVEIARRDPALVRVTPDLFSFELPLWVVMHEDLRGGARYRA 280


>gi|158340510|ref|YP_001521504.1| LysR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310751|gb|ABW32365.1| transcriptional regulator, LysR family [Acaryochloris marina
           MBIC11017]
          Length = 296

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 135/284 (47%), Gaps = 8/284 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  V  +GSFT A   L+  ++ +SR +S LE  +G++L  R  R L +TE G  
Sbjct: 2   ESLEIFRAVVDAGSFTAAGGVLNKDKAHVSRVVSRLEKRLGVQLLKRSTRRLNITEIGRD 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   LE T+  +  +  +P G LR+    + G   +   + E+L  YP+++++
Sbjct: 62  FYERACGILAALEETEASIAHAQGEPRGVLRVTAGAEFGPMRVNYWIAEYLKRYPEVRVE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++ +D+  +  D AIR+  P+  S L  R L  I    YA+P Y     EP S++ 
Sbjct: 122 ADFSDRIVDVIHEGIDVAIRV-GPLVDSELSVRPLGEIRYGLYASPAYAHTRGEPKSLKA 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+LI F    P+    +  +   +R        C+ +N+ L+  +    G GIALLP
Sbjct: 181 LAQHSLIMFA---PRGKPVWPMVRGKEREDVTLEALCV-INNNLAARELAADGLGIALLP 236

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +          L R++ED      +V   +  +   T K++AF
Sbjct: 237 HFHAAPQLAQKRLTRVLEDWERVPVSVSALFTSSRYMTPKVRAF 280


>gi|94313468|ref|YP_586677.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93357320|gb|ABF11408.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 304

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 141/293 (48%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  +    SFT AA+ L L +SS++  +  LE+ +G++L  R  R ++ T  G  
Sbjct: 5   DAMRVFTRIVERRSFTAAAKDLDLPRSSVTDAVKQLESRLGVRLLQRTTRHVSPTLDGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    +    E  +     +S  P G LR+     L +  L   L  FL  +P I +Q
Sbjct: 65  YFQRCLRLLADFEEAEAAFAGTS--PKGVLRVDVQGQLARRFLFPALPAFLAQHPGITLQ 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC +R+ +P Q S ++ R++  +     AAP YL     P+SI+ 
Sbjct: 123 ISEGDRLVDLVREGIDCVLRVGEP-QDSEMVARRVARLAQLTLAAPPYLARHGSPVSIES 181

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  H ++ F     G L+P         + V  P      + + V+   S++  C LG G
Sbjct: 182 LGNHRMVGFRSTLTGGLLPLEFMTGGVRSEVMLP------APVSVSGAESLVAACRLGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +P Y V+++     LV ++ ++  P+ +V   YP + + + +++ F +++
Sbjct: 236 LIQVPRYHVEEDLLRGTLVSVLSEIPPPTMSVSLLYPRSRQLSQRVRVFLDWV 288


>gi|134292115|ref|YP_001115851.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135272|gb|ABO56386.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 305

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 142/303 (46%), Gaps = 12/303 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S +++SR ++ LE  +G +LF R +R L LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARSMGVSVATVSRGVARLEGRLGGRLFNRTSRQLALTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L     ++Y   E  +   +E +V+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTLCEKAGDMYRHAEEAESAAREMAVQPRGLVRLAVPMSFGLRWVAPLLPAFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +  +  A+P YL     P   
Sbjct: 126 IDLHLSDASVDLIADGFDAALRI-AALPDSSLVARRLCAVTQYVVASPAYLAREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           ++L     +++     +   D  W  T D    EP +    L+V +  +++   + G  I
Sbjct: 185 RDLAGRACLSYAY---RAHSDV-WRFTNDAGEEEPILPNGPLRVTNSDALLPTLLEGLAI 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARD 296
             LP++I  +   +  L  I+ D       +YF  P A     K+ A  +F    L    
Sbjct: 241 GELPEFIAGEYLADGRLEAILTDWSLTKGGLYFITPSARARPAKIAALSDFFAEHLSEPS 300

Query: 297 WKF 299
           W++
Sbjct: 301 WRW 303


>gi|145589741|ref|YP_001156338.1| LysR family transcriptional regulator [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048147|gb|ABP34774.1| transcriptional regulator, LysR family [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 291

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 138/282 (48%), Gaps = 6/282 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +WD L+ F  +A+ G    AA  L ++ +++SR+I  LE E+G++LF R+  G  LTE
Sbjct: 3   SMNWDHLQYFLALAKDGRLIVAARSLGVNHTTVSRRIQALEREMGVQLFSRNNLGFELTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L  +  +V  ++      +   + + SG +R+  T   G  ++   L E    +P 
Sbjct: 63  AGMQLQNIAHKVEQQINGISKNIGSENTEISGTVRVGATEGFGTFIVGPILYELSKKFPR 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L+   + +++S   AD AI L++P +   L+  KL    +  YA+  YL +    L
Sbjct: 123 LSIDLLSLPRIVNLSRREADIAITLQRPTRGPYLVT-KLRDYELKLYASNEYLASNPAIL 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +LDK   I++ D +    E    L+ +D  I +P+    +  S  S +Q   +G G+
Sbjct: 182 SRGDLDKQTFISYVDDLLFSKE----LSYLDE-ICKPKQISFRSTSIQSQLQAARVGLGV 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           A+LP ++V+    L  I+   I    + +   P   K   ++
Sbjct: 237 AVLPSFMVQAQDGLQEILPKDIRIIRSFWMMMPNEYKKVDRM 278


>gi|157376742|ref|YP_001475342.1| hypothetical protein Ssed_3610 [Shewanella sediminis HAW-EB3]
 gi|157319116|gb|ABV38214.1| conserved hypothetical transcriptional regulator, LysR family
           [Shewanella sediminis HAW-EB3]
          Length = 299

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 133/277 (48%), Gaps = 15/277 (5%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DKL+   VF  V + GSF+ AA    ++ + + + I  LET +G KL  R  R  +LTE
Sbjct: 1   MDKLKSMQVFVNVVQHGSFSRAAINFAVTSTMVGKHIKFLETHLGTKLLNRTTRKQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   +   +  LQ    KP G++RI + +  G  LL   + +FL  YPD
Sbjct: 61  AGQLYYLECQRILDDIAEAENSLQALENKPKGRIRINSPVTFGNILLAPIVADFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L LDN  ID   D  D  IR+ + + +SSLI R++    M   A+P YL   R PL
Sbjct: 121 INVELTLDNDLIDPLHDPVDVVIRIGE-LANSSLIARQIAVYEMMFCASPDYLARHRVPL 179

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S+ +L  H  + F  GD+        +    +D    + + S L  NS  ++    + G+
Sbjct: 180 SLNDLASHQCLGFSYGDI------QSSLALRIDTSAFDTQHSRLTSNSGQALKVAALKGT 233

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           GI L P  ++ +     +L+ I+ + +     ++  Y
Sbjct: 234 GILLQPRLLLSEELGRGDLIEILSEQVPSPTPIHLMY 270


>gi|161521329|ref|YP_001584756.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345379|gb|ABX18464.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 328

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 135/274 (49%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L  F  VAR  +FT AA Q+ +SQS++SR ++GLE  +G++L  R  R ++LTE G
Sbjct: 32  DFNDLVGFMTVARERNFTRAAAQMGVSQSALSRTVAGLERRMGLQLLTRTTRSVSLTEAG 91

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  + ++E     L+  + +PSG +RI TT    ++ +   L+  L  YP+++
Sbjct: 92  DRLLSAIAPRFEEIEAEVDSLRAMTNQPSGTVRITTTDYAAKSYVWPRLQSLLRQYPELK 151

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+ D    DI  D  D  +RL   +    +  R    + M    +P YL++     + 
Sbjct: 152 IELVNDYGLSDIVADRYDIGVRLGDQVAKDMVAVRIAPDMTMTVVGSPSYLQSKPHARTP 211

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L  HN I     +P       W     R   + R+   L  N+   +++  + G G+A
Sbjct: 212 QDLTLHNCINL--RLPTRESLLPWELRKGRRELKVRVEGQLTFNNVYQMVEAALGGFGLA 269

Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273
            +P  +V+D     R   ++ED   P+F  +  Y
Sbjct: 270 YVPKDLVEDKVRAGRLCWVLEDWY-PTFVGHHAY 302


>gi|293394408|ref|ZP_06638707.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291423097|gb|EFE96327.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 305

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 137/286 (47%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R + LT +G +  
Sbjct: 7   MQVFIRVAEAGSFVRAAETLSLPASTVTSTIKNLERYLQVRLLNRTTRRVRLTPEGLQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E T+  L +S  +P G+LRI     +   ++  NLK+F  LYPDI + + 
Sbjct: 67  AQCREILSLIEHTESSLTDSVRRPQGRLRIDMPGGIAHFIVMPNLKDFYRLYPDIYLMIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR  + +  S+L+ R L        A+P YL+    P   + L 
Sbjct: 127 VSDRQVDLVQEGVDCVIRTGE-LTDSTLVARPLGRFRWVTCASPDYLREYGIPEMPEALS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I +     +   +  +    +  +  P      VN     ++ C+ G G+A L + 
Sbjct: 186 QHRAIHYFSGSGRRTNELRFTRGTEM-LSVPVEGDAAVNETGLYIRLCLEGFGLAQLAEN 244

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ +N     LV ++ D   PS  V   YP     +  ++AF +++
Sbjct: 245 VISENLQQGKLVEVLADWQPPSVPVTMLYPHQRFLSPAVRAFADWV 290


>gi|293395485|ref|ZP_06639769.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422169|gb|EFE95414.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 331

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 7/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LRVF  VA  GSF  A+E L + ++++S  I  LE E+G +LF+R  R + LT  G +L
Sbjct: 32  RLRVFIQVADVGSFVRASELLLMPKTTVSAAIQQLENEMGARLFHRTTRRVQLTGDGERL 91

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +       Q +     G+L +     + + ++   L +F L YPDI++ L
Sbjct: 92  LEHARSLLDDVAALDNLFQPAGSPIGGRLAVDVPSRIARRIIVPALPDFFLQYPDIELFL 151

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ ID+  +  DC +R+   +  SSLI   L  + M   A+P YL+    P   ++L
Sbjct: 152 SSSDRTIDLVQEGMDCVVRV-GSLSDSSLISHTLGQLSMVNCASPTYLQRHGTPQDNRQL 210

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H ++ +    P  +    W    +  I E  + S + VN+  + +  C++G G+  +P
Sbjct: 211 ADHWVVGYAQ--PSLLSANCWQWRHNGEIVEHTLRSKVTVNNVENYIGSCLVGMGLIQIP 268

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + ++   D+ +LV ++     P+  +   YP   + T +  AF ++
Sbjct: 269 RFDIQHFLDDGSLVEVLPQARAPAMRISLLYPHRRQRTARFSAFADW 315


>gi|89072784|ref|ZP_01159341.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89051306|gb|EAR56761.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 301

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 141/288 (48%), Gaps = 11/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + VF  V + G F  AAE    S S +S++I+ LE+ +G++L  R  R + LT +G 
Sbjct: 7   FDGITVFVQVVKCGGFGAAAEVTGHSSSYVSKEIAKLESRLGVRLLNRTTRSIALTPEGK 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++ +  E +  E+ +S+++P G L+++  +  G+  L      +L  YP+  +
Sbjct: 67  TYYQECVQLINDAEQSVAEITKSTIEPKGTLKVSCPVWFGKYYLADVFTTYLSRYPEATL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +K ID+  D  D  IR    +  SSLI +++ +  +   A+  YLK+        
Sbjct: 127 DLDMSDKSIDVIADGYDLVIRATAKLDDSSLICKRIYSSRICTVASKQYLKDYGYLQHPS 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243
           EL  H+   + +L     + FN     DR   +  +   Q V+S  + M   ++ +G+ +
Sbjct: 187 ELSDHSCFCYSNL-----KKFNVWGYRDRVGNKTLVDVHQRVSSNNTEMSLALVNNGLGI 241

Query: 244 --LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +P++ ++    +  LV + +D I P   VY  YP     + K+K F
Sbjct: 242 IRIPEFYIETQLQSGELVLLFDDYIPPQLDVYALYPTRKHLSAKVKCF 289


>gi|254498468|ref|ZP_05111197.1| putative LysR family transcriptional regulator [Legionella
           drancourtii LLAP12]
 gi|254352323|gb|EET11129.1| putative LysR family transcriptional regulator [Legionella
           drancourtii LLAP12]
          Length = 313

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 9/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F+         V   GSF  AA++  +S S IS++IS LE+++ I+L  R  R L LTE
Sbjct: 3   NFNISDALTLVCVVDEGSFAAAAKKAGVSSSVISKRISRLESQLRIQLIQRTTRSLALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++  ++     E+ +    PSG LRI   +  GQ  L   + +FL LYP+
Sbjct: 63  SGKIFYERCQKIKTEISEATAEVLQHHQTPSGLLRINVPMSFGQVHLVPAVNDFLELYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI+LIL ++      +  D AI ++    +  L  RK+       Y AP Y K    P 
Sbjct: 123 IQIELILGSQYASFIHNGLDVAIFIKDLPNTHLLKSRKITVRSKGVYGAPSYFKRFGLPK 182

Query: 182 SIQELDKHNLITF----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              +L  HN + +    G+ +    + F W      + I  P    L++NS   ++   +
Sbjct: 183 IPGDLVNHNCLIYQAEPGNQL-GIGQRFEWHFCHEQKTIIVPVAGNLRINSSQGLVTAAL 241

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+G+A L  ++V +   N +LV ++ED       ++  YP       K++ F +F+
Sbjct: 242 AGNGVAKLSSFMVTEEIKNGSLVSVLEDYCERDIDIHAVYPNQQFLPSKVRVFIDFL 298


>gi|254183311|ref|ZP_04889903.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184213844|gb|EDU10887.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 299

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQYLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGAPKRPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++    G GIA
Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           LLP +   +      LVR++ D   P   +Y  Y
Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270


>gi|258623586|ref|ZP_05718581.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258584132|gb|EEW08886.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 300

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ GSFT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGSFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P+++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPEVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S I RKL  + M   A P YLK C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFIARKLTDVAMSTLATPAYLKQCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 AEHRCLT-GSVKRWSYQHNTTQQTIDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  ++      LV +  D   PS      Y +      +LK F  F
Sbjct: 245 FYCQEEIARGALVEVFPDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|294012055|ref|YP_003545515.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292675385|dbj|BAI96903.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 292

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 144/297 (48%), Gaps = 24/297 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDWD +RVF  VAR+     AA  L +  ++ISR+++ LE  +G +LF   A   TLT  
Sbjct: 2   FDWDDIRVFLAVARTRKIAPAARALGIDATTISRRLARLERALGPELFELGAGERTLTAH 61

Query: 63  GSK-LHRVTSEVYHKLETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLL 117
           G   LH   S     +E+  +   E +       SG++R++     G  +L   L +F  
Sbjct: 62  GQALLHHAES-----IESAALAAMEEATGREHHLSGQVRLSVAEGFGTWVLAPGLADFSR 116

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P I++ LI  +  ++ S   AD A+ L +P Q   L  R++    +H YA+P YL   
Sbjct: 117 RHPGIRLDLITASGFLNPSKREADMAVMLARP-QRGRLSVRRMGDYRLHLYASPAYLAQA 175

Query: 178 REPLSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
             P S  +L  H L+ +   +P+ +   + ++L  V+  + E  +    +N     MQ+ 
Sbjct: 176 GTPGSTADLRGHVLVGY---VPEFIFSPELDYLDEVEAGL-EASLRATSIN-----MQHR 226

Query: 236 VL--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  G+GI +LPD+I   +P L+ +M D +    + +      LK   ++ A   ++
Sbjct: 227 MIAEGAGIGVLPDFIAGRDPALMPVMADRVEIMRSFWLVTHGDLKKLPRIAAVATWL 283


>gi|167839456|ref|ZP_02466140.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 299

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 126/274 (45%), Gaps = 16/274 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMRVFVETAERGSVSAAAQHLDMSRAMASRYVAFIEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    +     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLADHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNEVD-PSLIARRLGTCRSVLCASPGYLAEHGAPKRPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++  + G G+A
Sbjct: 185 ARHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAAIKGGGVA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           LLP +   +      LVR++ D   P   +Y  Y
Sbjct: 237 LLPTFAAAEPVRAGALVRVLPDCAAPDLGIYAVY 270


>gi|295684224|gb|ADG27456.1| LysR-like protein [Klebsiella pneumoniae]
          Length = 303

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 143/298 (47%), Gaps = 18/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKARGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +EL  H+ I  G      + P        +    R +        +VNS + + Q  +  
Sbjct: 182 KELSDHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV--------RVNSPIMVKQLALDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA+L +   K    N  LV I+++     F VY  Y    +    + AF +F F+K
Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISAFLDF-FVK 290


>gi|167901542|ref|ZP_02488747.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 294

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 140/287 (48%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++    L   +L   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W    A  D  +  PR   +  N+  + + + + G G+A +PD
Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPR--SMICNNVETRVCFAIRGRGLACVPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+D   +  L  +++  I    T +  +P     + KL+AF +FI
Sbjct: 242 FSVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288


>gi|171060831|ref|YP_001793180.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170778276|gb|ACB36415.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 310

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 127/279 (45%), Gaps = 18/279 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA+ GS T AA    ++ + I R+I  LE  +G+KL  R  R ++LT +GS  
Sbjct: 7   QIEAFVAVAQKGSLTAAAAGEGVAPAMIGRRIDALEARLGVKLMLRTTRRISLTHEGSAF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +   L   +  +    VK SG +RI      G+  +   +  F+ L+P+++I L
Sbjct: 67  LEDCNRMLADLANAEASVSAGGVKASGLIRITAPGGFGRRHVAPLVPRFMALHPEVRISL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ID+  +  DCA+R+   +  SSLI  +L        AAP YL     P    EL
Sbjct: 127 NLSDRVIDMVNESYDCAVRVGD-LPDSSLISVRLADNRRRCVAAPAYLARAGMPTHPNEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +H  +T   L  +  +   W  TVD      RP G  R+ C        +  +CV G G
Sbjct: 186 MRHECLT---LSSEASQSRGWAFTVDGEVAHLRPPG--RLDCTDGQ---VLHAWCVAGLG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
           +A    + V+ +     LV +++    P   +Y  +  A
Sbjct: 238 LAWRSSWEVEGDLRSGRLVSVLDTFAAPPNGIYAVFAHA 276


>gi|114706251|ref|ZP_01439153.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Fulvimarina pelagi HTCC2506]
 gi|114538112|gb|EAU41234.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Fulvimarina pelagi HTCC2506]
          Length = 293

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 136/300 (45%), Gaps = 31/300 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  VAR+G    AA +L L+ +++ R++S LE ++G KL +R   G  LT Q
Sbjct: 1   MNWDDARIFLAVARAGQILGAARRLELNHATVGRRLSALEADIGAKLLHRRPNGCELTAQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +     + + E+  + V  SG +RI      G + L   L      +P++
Sbjct: 61  GRAFLAQAELMEAATISARAEIGNADVSLSGTVRIGAPDGFGTSFLAPRLWRLAERHPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   IS   AD A+ + +P +   L+  KL    +  YAA  YL+   EP  
Sbjct: 121 TIQLVPVPRAFSISRREADIAVTVERP-EHGRLVAGKLTDYALGFYAARSYLERHGEPEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----------SCLQVNSYLSI 231
           + +L  H L+         +ED  +          PR+           S  +++S +  
Sbjct: 180 LGDLASHRLV-------GAVEDLLY---------SPRLTYFADLLQEWPSRFEISSAMGQ 223

Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++    G+GI +L  +  +    LVRI+ D  I  ++  +  + E++++  ++ A   FI
Sbjct: 224 LEAVAAGAGIGILHCFSAQRRSELVRILPDERIDRAY--WLVFHESVRDVARIAAVAEFI 281


>gi|170728449|ref|YP_001762475.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813796|gb|ACA88380.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 303

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 146/294 (49%), Gaps = 17/294 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA ++ + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +  + +  ++E  +  ++ +    SG LR+A  +   Q L+      F+ LYP+I+
Sbjct: 63  ALFFQHCTSISDEIEAAKATIENTHNDVSGSLRVAIPVSFSQELIANLCSSFMRLYPNIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++++ +  +  D AI+   P+QSS L+ R L+       A+P YLK    P + 
Sbjct: 123 LDVQFTDREVGLVGEGYDIAIKY-GPLQSSDLVARLLLERQPILVASPGYLKANGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           QEL +H+ I  G      + P        + +  R +        +VNS + + Q  +  
Sbjct: 182 QELMEHSGILLGTSRSAPIWPLGKGARKTMVSFKRKV--------RVNSAVMVKQLVLDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GIA+L + + K+   + +LV ++++       VY  Y    +    +  F +F
Sbjct: 234 FGIAMLSNSVCKNELASGSLVPLLQEWPIEPIKVYGVYSSRRQLAANISVFLDF 287


>gi|157373771|ref|YP_001472371.1| carbonate dehydratase [Shewanella sediminis HAW-EB3]
 gi|157316145|gb|ABV35243.1| Carbonate dehydratase [Shewanella sediminis HAW-EB3]
          Length = 315

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 140/279 (50%), Gaps = 21/279 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F+ +  +GS   AA+ L+L +S++SR++  LE ++ +KLF+R +R +TLT  GS 
Sbjct: 4   EDISLFHRIVETGSLVDAADLLNLPKSTVSRRLQTLEDDLKVKLFHRQSRSMTLTASGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIAT-TIDLGQNLLQGNLKEFLLLYPDIQI 124
            +  T  +   LE T +EL ++  +  G LRI    +   Q+++ G + EF+   PD+ +
Sbjct: 64  FYDKTQSILGDLEQTMVELTDTEAEIGGHLRILIFPVPQLQDIVTG-IFEFMDHNPDLTV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI+  +  D+  +  D A  +      + ++ R++++  +H  A+P YL     P+  +
Sbjct: 123 ELIVSTEPQDMIRNKIDLAFMVEDAFNENEMVAREMLSEVLHFVASPEYLAKAGTPVLPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----GSG 240
           EL  HN I F    P     FN +     P G  R   ++ N  L+ ++ C+     G G
Sbjct: 183 ELSNHNSILF--RYPNG-RIFNEV-----PFGNDRTIAVKGNLCLNSIELCLQATLSGRG 234

Query: 241 IALLP-----DYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
           IA LP     +Y+  +   L  + EDV       Y  YP
Sbjct: 235 IAFLPIEATHEYV--ERGELTMLFEDVEPYIGKCYLVYP 271


>gi|325982624|ref|YP_004295026.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212]
 gi|325532143|gb|ADZ26864.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212]
          Length = 307

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 143/289 (49%), Gaps = 6/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  V  +GS + AA+++ +++S +SR++  LE  +G++LF+R  R + LT+ G 
Sbjct: 4   FENMNAFVRVVEAGSISGAADRMDVAKSVVSRRLKELEAHLGVELFHRTTRQMNLTDSGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++ +  +   +   +    +      G L++A  +  G   L   + EFL  +P+I  
Sbjct: 64  AFYQQSVRILADILEAEHATSQFHGALKGNLKVAVPLSFGLMHLGPAISEFLQAHPEITF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  +++ +DI  +  D AIR+   +  SSLI R+L  I     A+P YL    EP S +
Sbjct: 124 DLDFNDRQVDILTEGFDLAIRI-ASLPDSSLIARRLAPIQAIMCASPSYLARMGEPQSPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  + + +LI    E++N      + I       L+ ++   +    V GSGI L+
Sbjct: 183 ELIHHRCLAY-NLISN-FENWNLYNIEGQLIRTKIAPYLKASNGEFLRDAAVAGSGIILM 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +IV    +   L+ ++    +   + Y  YP+    + +++AF +F+
Sbjct: 241 PTFIVYKEIERGALIPLLTQYTSSRLSAYALYPQTRHLSQRVRAFVDFL 289


>gi|226942158|ref|YP_002797232.1| Transcriptional regulator, LysR family [Laribacter hongkongensis
           HLHK9]
 gi|226717085|gb|ACO76223.1| Transcriptional regulator, LysR family [Laribacter hongkongensis
           HLHK9]
          Length = 301

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 143/300 (47%), Gaps = 24/300 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +R F  V   GSF+ A+  L L +S +SR+I+GLE+ +G++L  R  R L LTE G
Sbjct: 3   DLNDMRYFAEVVERGSFSAASRALGLPKSRLSRRIAGLESRLGVRLMQRTTRRLALTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R  + V  + +     +     +P G +R++  + L Q +L  +L  FL  YP ++
Sbjct: 63  ELFYRHCAVVRDEADMAAETVARLQAEPRGVVRVSCPVTLAQTMLGPHLPAFLAAYPQVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + + + N+ +D+  +  D A+R+R  +  S SL+ ++L   H    A+P  L     P S
Sbjct: 123 LDMRVSNRAVDLVEEGLDVALRVRPTLADSGSLVVKRLGVAHTVLVASPEQLTRQGRPRS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235
             EL + + +    +  +      WL  +  P G+       PR   L  +  LS+    
Sbjct: 183 PDELVRLDTVAMSAVDGRT----TWL--LQGPDGQDYPFQHTPR---LLADDLLSLRFAV 233

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           + G G   LPDY+ +++    R+  +++ P +      ++  +P        ++ F +F+
Sbjct: 234 LAGVGATYLPDYLCREDVMAGRL--ELVLPGWAPCPGIIHAVFPSRRGQVPAVRVFLDFL 291


>gi|186471815|ref|YP_001863133.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184198124|gb|ACC76087.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 295

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 142/292 (48%), Gaps = 13/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + V+  V  +GS + AA  + +S +S+SR I+ LE + G +L  R  R L +T++G 
Sbjct: 4   FEAMSVYVRVVEAGSLSAAARAIPMSLTSVSRHIAALEDQFGAQLLRRTTRNLAMTDEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+     +  +++     L     + SG+LRIA    LG+ L+   L  FL ++PD+ +
Sbjct: 64  ILYDRAKSILGEVDELGSALSAGRGRLSGRLRIAAPNLLGRLLIAPLLPRFLAMHPDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L ++ ++I  +    A+R+ + +  SSL+ RKL  I M   AAP YL     P    
Sbjct: 124 DLMLVDRVVNIVEEGLHLAVRVGR-LPDSSLVARKLDDIEMMVCAAPSYLARRGTPRRPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241
           +L +H+ + F D        F   AT        R+S    L +NS  +++   + G+GI
Sbjct: 183 DLRRHDCLVFSDAAGPVDWRFQSGAT------RTRVSVTGRLWMNSLDALVSAALEGAGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P + V    D   L  +++    P+  V+  +      + K++ F +++
Sbjct: 237 VRAPAWQVAAHIDAGRLQPVLDKFAPPATPVHVLFERTKLASPKIRTFVDYL 288


>gi|330965855|gb|EGH66115.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 303

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 140/301 (46%), Gaps = 9/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V RSGSF  AA QL +  +++SR++  LE ++G +L  R  R L LT+ G
Sbjct: 4   DLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRVQHLEVQLGTRLLQRSTRKLVLTQAG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   +     L +   +L     +PSG++RIA   D         + +FL  YP +Q
Sbjct: 64  EHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYPRVQ 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLS 182
           ++ +L ++  D+  D  D A R   P+Q S  + R+L+        A+P YL     P S
Sbjct: 124 LEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATYGMPDS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           ++ L  H+ ++     P  +  +  L   D  + + +I+     N+  ++ +  + G GI
Sbjct: 183 LESLQAHDCVSAA--YPGGVTTWRMLGP-DAKMHDVQIASRFNANTAQALRKATLAGLGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           ALLP  +++    N  LV ++      S  ++  YP   +    + AF   +  K R   
Sbjct: 240 ALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLRGNA 299

Query: 299 F 299
           F
Sbjct: 300 F 300


>gi|289670149|ref|ZP_06491224.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 344

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRISRELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239
           L   EL  H  +            F W  +    + +  ++ L V +  + +   VL G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K      LV R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|255263828|ref|ZP_05343170.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
 gi|255106163|gb|EET48837.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
          Length = 295

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 137/274 (50%), Gaps = 9/274 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F +V  +G  + AA++L +++S++SR+IS LE   G  L  R      LT  G +
Sbjct: 5   EDLRIFGIVVETGGISKAAKRLGIAKSAVSRRISLLEERYGAILIDRTPGVWELTATGKE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++   +V  +++  + +   +S   SG L ++   + G N L   L  F   +P+IQ+ 
Sbjct: 65  LYQRALQVVGEMDGIEADFVNTSANHSGPLSVSVPREFGINFLSNALLAFKAKFPEIQLT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D++ ID+  +  D AIR+   I  S+   R + T++   +A   Y K    P  + +
Sbjct: 125 IDFDDRSIDLDRENYDFAIRITGNIIDSAGATR-IGTVNHRLFAGSQYFKTHAMPTCLDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  HNL+ FG    + +  F       + +  EP    L  NS   +++  + G GI+ L
Sbjct: 184 LRDHNLLYFGS-ARRTVWHFRDAKDKHQELEFEP---FLNSNSGTFLLKATIGGHGISRL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           PD+I  +     +LV ++ D++ P + ++  + E
Sbjct: 240 PDFIASEAVPQGDLVEVLPDLVMPEWGIFLVHSE 273


>gi|189023320|ref|YP_001934088.1| LysR family transcriptional regulator [Brucella abortus S19]
 gi|260546339|ref|ZP_05822079.1| bacterial regulatory protein LysR [Brucella abortus NCTC 8038]
 gi|189018892|gb|ACD71614.1| Bacterial regulatory protein LysR [Brucella abortus S19]
 gi|260096446|gb|EEW80322.1| bacterial regulatory protein LysR [Brucella abortus NCTC 8038]
          Length = 297

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 132/285 (46%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G +L 
Sbjct: 9   LNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++ +   ++ E   +PSG + ++      Q++L   L+ FL  +PDI I+L 
Sbjct: 69  AQVGPALAEIASGFAQIGELRERPSGTVLLSADEYAIQSVLWPALERFLAEFPDIHIELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   Q+L 
Sbjct: 129 TDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+ I     +P   E F W  T  R   + RI+    L   S   ++Q C  G G+A L
Sbjct: 189 DHDCINL--RLPTHGEFFAW--TYSRHGKDIRITTQGRLVFTSIAQVLQACFAGFGLAYL 244

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P DY  +  ++  LV ++ D        +  YP   ++   L A 
Sbjct: 245 PRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAAL 289


>gi|313110787|ref|ZP_07796642.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|310883144|gb|EFQ41738.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 297

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 146/287 (50%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR+  ++ L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPALADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPTYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
             + +       +E+  W   + R  GE  P+I    V N+  + + + +   GIA LPD
Sbjct: 186 TCLHYRFSNTGRLEE--W--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++      LV +++         +  +P   + + KL+AF +F+
Sbjct: 242 FSIREALREGRLVSVLDTFCERRARFFLLWPSGRQVSPKLRAFIDFV 288


>gi|116051627|ref|YP_789534.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586848|gb|ABJ12863.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 302

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA +G FT AAE++ +S S ISRQ++ LE  +  +L YR  R ++L+E G 
Sbjct: 4   WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     + + S +P G LR+   +  G+  +   +  F+  YP +++
Sbjct: 64  TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  S L+  +L    M+    P YL+    P S  
Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCTTPEYLRRHGTPQSPT 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL + N +     +   +ED     T  R  G  R      NS  +++   + G G+  L
Sbjct: 183 ELGQFNCLIGSSDLWSFLEDGR--ETQHRVQGNWR-----CNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V +   +  LV ++E    P+  V+  YP+    + K++   +++
Sbjct: 236 PDYYVIEHLRSGRLVSLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYL 284


>gi|212635225|ref|YP_002311750.1| transcriptional regulator [Shewanella piezotolerans WP3]
 gi|212556709|gb|ACJ29163.1| Transcriptional regulator protein, putative [Shewanella
           piezotolerans WP3]
          Length = 295

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 132/274 (48%), Gaps = 11/274 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F +V + GSFT AA  L L ++++SR+I  LE  +  +LF+R  R L LT+ G  
Sbjct: 4   EDLKLFTIVVKLGSFTAAANALDLPRANVSRRIGELEKALNAQLFFRTTRQLRLTQHGEA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V    E  + +L +   KP GK+++    +     LQ  L +F  LYPDI++ 
Sbjct: 64  YYHELLTVLEGFEQAKNKLHDIDEKPIGKVKVGFLPE-SDEALQPALAKFQQLYPDIELD 122

Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + I +N + DI     D  I   K +Q S  I R+++++    YA+P YL +  EP S+ 
Sbjct: 123 MRITNNYETDIYALALDFVIYAGK-VQDSGFIARRILSLGRGIYASPEYLASHGEPQSLA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL KH+ I +    P    D  W    +    + R +C   N    + +  V G GI  +
Sbjct: 182 ELSKHDAICY--RWPDGSIDDKWDLISETVHVKSRFTC---NHMGFVRRAIVGGQGIGFM 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           P        +   +VRI+    +    V+  YP+
Sbjct: 237 PPLFALAAIEAKRIVRILPQYESKKEDVWLIYPD 270


>gi|328545632|ref|YP_004305741.1| Uncharacterized HTH-type transcriptional regulator [polymorphum
           gilvum SL003B-26A1]
 gi|326415372|gb|ADZ72435.1| Uncharacterized HTH-type transcriptional regulator [Polymorphum
           gilvum SL003B-26A1]
          Length = 320

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 140/290 (48%), Gaps = 18/290 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD LRVF  VAR+GS + AA  L ++ S++ R+I   E  +G++LF R   G  LT  G
Sbjct: 7   NWDDLRVFLAVARAGSLSGAARTLGVNHSTVFRRIGAFEEALGVRLFERQPGGYLLTPAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDI 122
            +L      V  ++ +   ++    ++ SG +R  TTID L   LL  +L  F   YP I
Sbjct: 67  EELRDGALRVEEEIASLSRKVTGQDLRLSGAVRF-TTIDMLAFGLLPRHLAGFRDAYPGI 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L++ N  +++S    D A+R+     + +L+ R++  +    YA+  Y     EP  
Sbjct: 126 EVELVVGNVALNLSRREVDVALRVGN-APAETLVGRRVGRLAFAVYASADYRARRPEP-- 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRIS-CLQVNSYLSIMQYCVLGSG 240
             +L  HN I F         D    A V R  G  P +   L+ NS  + +     G G
Sbjct: 183 --DLSLHNWIGF---------DSEHEALVRRMAGFLPEVKPVLRTNSVAAALSAAKAGMG 231

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A LP  +     +LVRI       +  ++    E L+ T +++AF +F+
Sbjct: 232 LAPLPCGLADLETDLVRIAPLPDEFTLDLWLLTHEDLRQTARIRAFLDFL 281


>gi|187926772|ref|YP_001893117.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241665102|ref|YP_002983461.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728526|gb|ACD29690.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240867129|gb|ACS64789.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 299

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 139/276 (50%), Gaps = 14/276 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++  F  V  +GS T AAE++ + +S++SR+++ LE  +  +L  R   GL++TE G  
Sbjct: 5   DEIMTFVEVVNAGSITKAAERMGIVKSAVSRRLNDLEDRLKARLLVRSTAGLSVTEAGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H     +  +L+  ++ + ++S   SG + ++  + L   +L  ++  FL L+P + + 
Sbjct: 65  FHERARRIIAELDEAELTVTDASADLSGTIHMSAPVSLTNLVLMPHICAFLRLHPGLTLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +DI  +  D AIR    +  S L+ RKL  +     A+P YL +   PL+ Q+
Sbjct: 125 LSLSDRFVDIVNEGFDIAIRA-GTLSDSRLVARKLTDMRRVTCASPDYLASRGTPLTPQD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241
           LD H+    G +     E   W  T   P GE  +    + ++ N+  +++   V G GI
Sbjct: 184 LDHHD----GLVSTNAPESTYWHYTA--PDGETYLARPNTRMKANNGEAVITAAVAGLGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           A +P +I  +      L+ ++ D    + ++Y  YP
Sbjct: 238 AAVPAFISTELIAQGALIPVLSDYRLAAGSLYAIYP 273


>gi|163758074|ref|ZP_02165162.1| transcriptional regulator, LysR family, putative [Hoeflea
           phototrophica DFL-43]
 gi|162284363|gb|EDQ34646.1| transcriptional regulator, LysR family, putative [Hoeflea
           phototrophica DFL-43]
          Length = 301

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 141/299 (47%), Gaps = 18/299 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSFDW+++R F   A  GSF+ AA  L  +Q +I RQISGLE  +G+ LF R  RG TLT
Sbjct: 6   MSFDWNQVRAFLATAEEGSFSGAARALKTTQPTIGRQISGLEAALGVTLFERTVRGPTLT 65

Query: 61  EQGSKL--H-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           E G  L  H RV  E    + T        S + +G++ ++ T  +   +L G L +   
Sbjct: 66  EAGRDLLDHVRVMGETATLISTVA---AGQSQEVTGEVAVSATDLVSAVILPGLLGDLRE 122

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P I +++I  N   ++    AD AIR  +P +   LI R L     + YAA  YL   
Sbjct: 123 TAPGIHLRIIASNDISNLMRREADIAIRHVRPTE-VDLIARHLGDFRANLYAASVYLDKA 181

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCV 236
             P + + L  H  +           + + L T+ R  G P       ++S   I+Q+ +
Sbjct: 182 GRPRNPRALADHAFV--------GSPNSDQLVTILRDKGIPVHRENFVMSSESGIVQWEL 233

Query: 237 L--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  G GI  +P  + +    + +++ ++ +  F V+      LK + +++   +F+  K
Sbjct: 234 VKSGYGITFMPALLGEATSGIEKVLPELPSLEFPVWLVTHRELKTSRRIRVVFDFLARK 292


>gi|146306147|ref|YP_001186612.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574348|gb|ABP83880.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 318

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 126/286 (44%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GSFT AA+ L LS + +SR I+ LE  +  +L  R  R L LTE G +  
Sbjct: 7   MRVFVQVVERGSFTAAAQALDLSTAQVSRLIADLEQHLEARLLQRTTRRLALTETGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++E    E + +   PSG+LR+ T   LG   +   +  +   YP + ++L 
Sbjct: 67  ERCRQILGQIEEADAEARGAHRTPSGRLRVHTMTGLGLQHITPLIARYAERYPQVVVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D+  D  D  I   + +  S L+ ++L  ++    AAP YL     P    +L 
Sbjct: 127 LAQRTPDLLEDGHDVTIAFARDLPDSQLVAQRLGPVYSVLCAAPSYLAGHGVPQRPSDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +   D + +   DF      D  +      C QVN   ++++    G G  LLP +
Sbjct: 187 QHRYLRLTDPLYRGQWDFG-----DEQLDALPAECFQVNVAEALVKAAQAGMGFCLLPSF 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +         L+RI+      +  +Y  YP       K + +  F+
Sbjct: 242 VASQPLREGRLLRILPQHRLRALNIYAMYPSRRLLDAKTRTWVEFL 287


>gi|187924270|ref|YP_001895912.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715464|gb|ACD16688.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 353

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE G+  
Sbjct: 6   SMRVFVKVADLGSFVGAAGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGTTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE  +  +   + +P G LRI   +  G + L   ++ +   YPD+   +
Sbjct: 66  LERVRHILDDLEGVEQMVVARNHEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVPDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T +M   A P YL     P   + L
Sbjct: 126 TLADRHVDLVEEGFDVGIFVARHMRSASIVTRRLTTGYMTVCATPAYLAQHGTPTRPEHL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
             H  ++      +  E          P GE R+   + +  N+   + Q+ + G G+A+
Sbjct: 186 LSHPCLS------RPSEQGGEERVFTGPDGEVRVRPTNAIVANNTEMLRQFALRGMGVAM 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LV ++ +   P   V   YP  L    K++ F
Sbjct: 240 LPSYLIGRDLASGRLVPLLREYRLPQIEVTIAYPSRLHLPAKVRTF 285


>gi|83593592|ref|YP_427344.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576506|gb|ABC23057.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 304

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 25/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+   V  +GSF+ A   L ++ SS+SRQ+S LE  +G +L  R  R L+LTE G   H
Sbjct: 7   MRLLSRVVEAGSFSEAGRLLGMAPSSVSRQVSALEDTLGTQLLNRTTRRLSLTEAGGLFH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E     +      P G L++   +  G   +   L  FL  YPD+ + L 
Sbjct: 67  DRALRILADVEDATRVVSSLESAPRGTLKLNVPVGFGNYHVAPALPLFLARYPDLTVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  ID+  +  D A+R+   ++ SSL+ R+L       Y +P YL+    P +  +L 
Sbjct: 127 LSDHFIDLIEEGVDVAVRI-GALRDSSLVARRLADNRRMVYGSPDYLRRMGTPETPHDLT 185

Query: 188 KHNLITF-------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            H  I +       G L  +  +      TV  P        L  N+  S+ +  + GSG
Sbjct: 186 AHRCIAYRYRPGPQGWLFER--DGIRLDITVTGP--------LTANNSESLHKMILGGSG 235

Query: 241 IALLPDYIVKDNPN---LVRIMED-VITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +     LV ++ D  ++P+     ++  YPE+   + K++AF +F+
Sbjct: 236 LAMLPTWMAYSDVKSGLLVPLLGDWTMSPTSLESAIHVVYPESRHLSAKVRAFIDFM 292


>gi|311105588|ref|YP_003978441.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760277|gb|ADP15726.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           63 [Achromobacter xylosoxidans A8]
          Length = 292

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F   A+ GS+  AAE L LS S++ + ++ LE  +G++L  R  R ++LTE+G+ 
Sbjct: 5   NGIHAFVHAAQRGSYVAAAEHLGLSASAVGKSVARLEDRLGVRLLNRSTRRISLTEEGAL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  + ++L+  + E+      P G+LR++    +G  LL   L EF   YP+I+++
Sbjct: 65  YLERCLRIVNELDEAEAEVTRGREAPRGRLRVSVPA-IGYRLLLPLLPEFTRRYPEIELE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ +D+  +  D  IR  +    S L  R L         AP YL     P +  +
Sbjct: 124 LDFNDRIVDVIGEGLDAVIRSGE-FADSRLRARPLRPYRFVVAGAPAYLAARGRPRAPGD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           LD H  + +    P   +   W    D P+  P  + L  NS  +++     G G+A LP
Sbjct: 183 LDGHARLAY--RYPGTSQVQPW-QFRDGPVA-PAPAALSFNSVEALIGAAQAGLGLAYLP 238

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D+ ++   D   L  +++D +         +P++     KL+AF +F+
Sbjct: 239 DFALRAALDEGRLATVLDDCLDADGRFSVLWPDSRHPLPKLRAFVDFM 286


>gi|330821573|ref|YP_004350435.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373568|gb|AEA64923.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 300

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF+ AA +L L Q ++S+ ++ LE  +G +L  R  RGLT T+ G + +
Sbjct: 7   METFVAVVEAGSFSAAARRLKLGQPAVSKSVAQLEAHLGARLLLRSTRGLTPTDAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   + +  +  ++ESS   SG+LR+   +   +  +   LK F+  +PD+Q+ +I
Sbjct: 67  EHARLAIEEADQAEQAVRESSAGLSGRLRVGAAVTFARLHVLPALKTFVDRHPDLQLDII 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ ID+  +  D A+R+ + +  SS+    + +      A P YL     PL+  EL 
Sbjct: 127 LDDRAIDLLEEGVDVALRMGR-LDDSSMTAHPIASSRRLVVATPEYLAEAGTPLTPAELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLAT-VDRPI-GEPRISCLQVNSYLSIMQYCVLGS-GIALL 244
           +H  I +          F    T V   + G  R+S  +       M+  VL   G+A+ 
Sbjct: 186 RHQAIVYSQRGGGESWSFQRDGTEVTVAVSGRVRVSAAEG------MRTAVLADMGLAVA 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +++      N  +  ++ D   P   ++  +P     T K +AF  F+
Sbjct: 240 SEWMFGPELANGTVRAVLTDWALPPVDLWAVFPSGRLVTSKARAFVAFV 288


>gi|330817470|ref|YP_004361175.1| transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327369863|gb|AEA61219.1| transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 300

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 135/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFIAVAGKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLLRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H ++  +  +    VK SG LR++     G+  +   +  F   +PD+ I L
Sbjct: 66  LEDCQRIVHDMQNAEASVSAGGVKASGHLRVSGPAGFGRRHVAPLVPAFTAAHPDVTITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        AAP YL     P ++ EL
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVAAPAYLARAGTPRTLDEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +    L     +   W    D  I   R++  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHHCLA---LAANANQQRGWAFQQDGQIVSIRVAGPMECSDGAVLHEWCLEGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGADIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|254000432|ref|YP_003052495.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253987111|gb|ACT51968.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 300

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 145/296 (48%), Gaps = 7/296 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF  VA   SFT AA+ L L + SIS  ++ LE  +G +L +R  R + LT+ G +
Sbjct: 5   DAMQVFVRVAELASFTQAADSLGLPKGSISNAVTQLEARLGARLLHRTTRKVQLTQDGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++  +++  +   Q++     G+LR+   +++  NL+   L EF+  +P I+I+
Sbjct: 65  FYERCKDLLAEVDEVESLFQQTETLLRGRLRVDMPLNMAHNLVIPQLPEFMQRHPGIEIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D   +  DC +R+   +  S L+ R L T+ M   A+P Y++    P+++++
Sbjct: 125 LSSTDRRVDPISEGFDCVVRV-GVLTESGLVARHLGTLEMVNCASPAYIRQYGMPMALED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H ++ +  ++      F +L A V R    P  + + VN+  +    C+ G GI  +
Sbjct: 184 LAAHYMVHYVSVLGAKPSAFEYLEAGVSRHCLVP--ARVTVNNSTAYSMACLAGLGIIQV 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P   V+       L+ ++ +       V   YP     + +L AF  ++  K   +
Sbjct: 242 PLVAVRAYLQRGELLELLPEFKPEPMPVSLLYPHRRHLSRRLLAFMEWLTQKVHAY 297


>gi|69209774|gb|AAP70013.2| LysR-like protein [Klebsiella pneumoniae]
          Length = 304

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 143/298 (47%), Gaps = 18/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKARGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +EL  H+ I  G      + P        +    R +        +VNS + + Q  +  
Sbjct: 182 KELSDHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV--------RVNSPIMVKQLALDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA+L +   K    N  LV I+++     F VY  Y    +    + AF +F F+K
Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISAFLDF-FVK 290


>gi|117617569|ref|YP_855739.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117558976|gb|ABK35924.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 300

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 140/294 (47%), Gaps = 23/294 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V   GS++  A +  +S   + + + GLE  +G KLF++  R  TLTE G    
Sbjct: 7   MRIFTRVVDLGSYSAVASEEGISAQMVGKHVQGLEQWLGGKLFHKTTRQQTLTELGQLFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +L  T+   Q    +P+G+LRIA  +  G + L   L  FL  YP +++ L 
Sbjct: 67  ARCQRVLEELALTESLTQHLLAEPAGRLRIAAPLSFGHHRLVPLLPAFLDRYPKLEVDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +D+  +  D AIR  +P Q  +L+ R L+T H    AAP YL     P    +L 
Sbjct: 127 LTPRWVDLVEEGVDAAIRTLRP-QDEALVARPLLTQHYRLCAAPDYLARHGVPRQPADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           +H          +C+   NW           D    E R+ S L++N + +++   + G+
Sbjct: 186 RH----------QCLHG-NWGEHERWQFVGEDGQSEEVRVASRLRINHWPALLTAALSGA 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI+L P   V+++     L+ +++    P  T++F YP A +   K+    +F+
Sbjct: 235 GISLQPADQVQEHIAAGRLLPLLDTYRIPDKTLHFIYPAARRQVLKITLLGDFL 288


>gi|83720032|ref|YP_443330.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167620459|ref|ZP_02389090.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257139575|ref|ZP_05587837.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83653857|gb|ABC37920.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 299

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L YR  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLYRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S+V PSG LR+     +G+ ++   L EFL  YP I ++
Sbjct: 65  LYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPEFLDRYPQISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGLTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H  + +       +  + W+    V R     R++   VNS  + +  C+ G G+  
Sbjct: 184 LERHQPVNYASPTNGRIAPWEWVEGDAVKRVALRGRVT---VNSAEAYIACCLSGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ +       +   YP     + + + F  ++
Sbjct: 241 IPAYDVDAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAQWL 290


>gi|187922437|ref|YP_001894079.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713631|gb|ACD14855.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 312

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 151/292 (51%), Gaps = 17/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +LE  +  +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQVLTELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDIT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R++ T H+   A+P YLK    P ++ +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARQIATAHLVLCASPAYLKRHGTPKTVADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL-GSGIA 242
            +HN + +  +    +E     AT D     PR+     L VN +L   +  VL G+GIA
Sbjct: 187 ARHNYLQYAGV--SALEIAP--ATGD---ASPRVRLTGNLIVN-HLEAQRVIVLQGAGIA 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           +L   ++ D+     LV ++ D + P    ++  Y      + K+++F +F+
Sbjct: 239 MLGTEVIGDDLAAGRLVPLLVDEVPPRELPIHVVYASRRHLSAKVRSFVDFL 290


>gi|117618303|ref|YP_858045.1| transcriptional regulator [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559710|gb|ABK36658.1| transcriptional regulator [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 309

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 130/261 (49%), Gaps = 13/261 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + L +F  V  +GSF  AAE+LHL++S++ + I+ LE  +G++LF+R  R  +LT
Sbjct: 1   MANSLNGLDLFASVVEAGSFAQAAERLHLTRSAVGKGIARLEQRLGVQLFHRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+  HR       ++   +  L  + +  +G L+++  +  GQ  +   L E    +P
Sbjct: 61  EEGALFHRHCLRALEEVRLGEAALASNKLTLNGSLKVSMPVLFGQLCVAPLLLELAQAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L   ++ +D+  +  D  IR  +P  S  L   +L    M   AAP YL    EP
Sbjct: 121 GLALSLSFSDRKVDLVEEGLDLVIRNGEPPDSLDLAAHRLGEHGMTLCAAPSYLAERGEP 180

Query: 181 LSIQELDKHNLITF---GDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           + + +L +H  I +   G ++  +   D  W +   RP G      LQ +   +I Q  +
Sbjct: 181 MMLADLAEHEGIAYLRQGRVLAWQWQLDGQWQSV--RPTGR-----LQFDDLHAITQAAI 233

Query: 237 LGSGIALLPDYIVKDNPNLVR 257
            G G+A LP ++ +  P+L R
Sbjct: 234 AGFGLAWLPSWLAR--PHLER 252


>gi|134297380|ref|YP_001121115.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134140537|gb|ABO56280.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 349

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+    V   N+   + Q+ +LG G+A+
Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|220925132|ref|YP_002500434.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219949739|gb|ACL60131.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 302

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 23/298 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF  VA++GSF+ AA +L LS +++S+ +S LE  +G  LF+R +R L LTE G
Sbjct: 6   DFEAWAVFARVAQAGSFSRAAAELGLSTATVSKAVSRLEARLGTGLFHRTSRRLALTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  + + +  + +P G +R+A  +  G   L   L +FL  +P++ 
Sbjct: 66  RAALEGAARIVAAGEAAEADAEAGAREPRGLVRVAAPMSFGLKHLAPLLPDFLAAFPEVA 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     AAP YL     P   
Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LADSSLRVRRLCGVRRSLVAAPAYLARAGRPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPRISC---LQVNSYLSIMQYC 235
           Q+L +H           C+  + +L   DR     P GE  ++    L+ N+  ++    
Sbjct: 185 QDLARH----------ACL-GYAYLPNPDRWHFAGPGGEVSVTPSGRLRANNADALTPAL 233

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G G+A+ PD+++ +   +  L R+M     P   +    P       ++ A   FI
Sbjct: 234 LAGLGLAVQPDFLIWEELASGRLERVMPGWAPPPIALNLVMPPGSLRPARVAALIAFI 291


>gi|91784152|ref|YP_559358.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91688106|gb|ABE31306.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 300

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 136/288 (47%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFVTVAAKGSLSAAASAEGVAPAIIGRRIDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H+++  +  +    VK SG LR++     G+  +   +  F + +PD+ I L
Sbjct: 66  LEDCQRIIHEMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  +L        A+P YL     P S+ +L
Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLRLGENRRVCVASPAYLSRRGAPHSLADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
             HN +  G       +   W+   D  +   ++S  ++ +    +  +C+ G G+A   
Sbjct: 185 AHHNCLALG---ASANQQRGWMFQQDDKVVSIKVSGTMECSDGAVLHDWCLEGYGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGTDIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|167835644|ref|ZP_02462527.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 294

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 141/287 (49%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGTRFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  Q EL  S+  PSG+LR++    L   +L   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAQQELSRSAHAPSGRLRVSLPA-LSSPVLP-VLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R+L T       +P Y      P +  +L +H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-HDSRLSARRLGTFSQVVVGSPDYFARHGAPRTPADLARH 185

Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W    A  D  +  P+   +  N+  + + + + G G+A +PD
Sbjct: 186 ACLLY--RFPTTGKLERWPLRPAPGDADVELPK--SMICNNVETRVCFAIRGRGLACVPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+D   +  L   +++ +  S + +  +P     + KL+AF +FI
Sbjct: 242 FAVRDELASGRLRTALDEYVERSQSFHVLWPSGRHASPKLRAFVDFI 288


>gi|167590769|ref|ZP_02383157.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 301

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 141/301 (46%), Gaps = 16/301 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++ GS
Sbjct: 4   FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGAVLLNRTTRQVTLSDAGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +L      + +   +PSG LR++  +  G   +  ++  FL  YP + I
Sbjct: 64  VYYARAKRLLEELAEADALVSDRGSEPSGPLRVSVPVAYGVRRIAPHIAAFLARYPKLDI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+ +   D AIRL +   S+ ++ R+L T   +  A+  YL+    P +  
Sbjct: 124 DLQLTDERVDLVVGRIDVAIRLGEAAPSADVVARQLGTFQRYVVASHAYLEARGMPATPG 183

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           EL  H  + F   GD       D +  ATV   I   R   L+ N    +    + G+GI
Sbjct: 184 ELVDHACLRFHFGGDQQAWTFADAHGAATV---IVAGR---LKSNHSEVLRDAALDGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDV-ITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD++V  +     L R+ E   +TP      V   Y    + + ++ AF +F+   A
Sbjct: 238 ALLPDWLVDADVRSGRLRRLFEQYEVTPDAARSVVTALYLPNQRGSKRVAAFIDFVESLA 297

Query: 295 R 295
           R
Sbjct: 298 R 298


>gi|167582781|ref|ZP_02375655.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 296

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 134/286 (46%), Gaps = 11/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A  +L +S S+I + I+ LE  +G++LF+R  R +TLT++G   H  
Sbjct: 9   AFVRTAETLSFVAAGRKLGVSASAIGKTIAKLERSLGVRLFHRTTRKVTLTDEGRHFHER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 +L   Q  L +S+  P G+LR++  + +G   L   L EF   YPD+++ L  +
Sbjct: 69  CHRALEELRDAQAALSQSAQTPRGRLRVSLPV-IGYRFLLPVLPEFKRRYPDVELDLDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D  IR    +  SSL+ R+L        A+P YL     P +++EL  H
Sbjct: 128 DRLVDVVEGGFDAVIR-SGTLSDSSLMSRRLGPFSFLLCASPAYLARAGAPRTLRELGAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALLPDY 247
             + +    P   +   W    D   GEP    + +  N+  ++      G GI  +PD+
Sbjct: 187 ACVRY--RFPTTGKLQPWALLPDG--GEPPNLHTTMTCNNMEALRAAVTAGFGIGYMPDF 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +D   +  LV +++            +P   + + K++ F +F+
Sbjct: 243 LARDALADGALVTVLDAYRIGPGQFSILWPSNRQLSPKVRVFVDFV 288


>gi|126438703|ref|YP_001057931.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|167909782|ref|ZP_02496873.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|126218196|gb|ABN81702.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 294

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 140/287 (48%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++    L   +L   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W    A  D  +  PR   +  N+  + + + + G G+A +PD
Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPR--SMICNNVETRVCFALRGRGLACVPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+D   +  L  +++  I    T +  +P     + KL+AF +FI
Sbjct: 242 FAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288


>gi|261494574|ref|ZP_05991056.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261309765|gb|EEY10986.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. OVINE]
          Length = 296

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 142/300 (47%), Gaps = 24/300 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + LR F +VA++ SFT AA Q+ +SQS++S  I G+E  + IKLF+R  R ++ T
Sbjct: 1   MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEERLQIKLFHRTTRSISTT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L++    ++ +++     L E      G LRI     + +++L     EF+  YP
Sbjct: 61  EAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEHVFRDVLADKFAEFVKRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L+ +++ +DI  +  D  IRL   +    +  R    + M A A+P+YL     P
Sbjct: 121 EVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRISPDVKMTAAASPNYLAQHGTP 180

Query: 181 LSIQELD-----KHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISCLQVNSYL 229
            +  +L      KH L T G ++     D         PI       +P+ +    N +L
Sbjct: 181 KTPFDLTEHHCLKHRLATLGGILAWEFRD---------PITKKIVKFQPQGNLTANNGFL 231

Query: 230 SIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +  Y   G GI   P   ++   DN +LV I+ D        +  YP   +N+  LKA 
Sbjct: 232 -LQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLYYPNRRQNSPLLKAL 290


>gi|296389273|ref|ZP_06878748.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 297

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 146/287 (50%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR+  ++ L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRV--SLPLVSGLVLPALADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPVD-SRLSMRELGEFQLKLVGSPTYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
             + +       +E+  W   + R  GE  P+I    V N+  + + + +   GIA LPD
Sbjct: 186 TCLHYRFSNTGRLEE--W--PLRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++      LV +++         +  +P   + + KL+AF +F+
Sbjct: 242 FSIREALREGRLVSVLDAFCERRARFFLLWPSGRQVSPKLRAFIDFV 288


>gi|270261789|ref|ZP_06190062.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270045273|gb|EFA18364.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 295

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 127/242 (52%), Gaps = 6/242 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A   L +S S+I + I+ LET + ++LF+R  R +TLT +G+   + 
Sbjct: 9   AFVQAAETLSFVEAGRVLGVSASAIGKSIARLETRLAVRLFHRSTRSMTLTAEGTLFLQR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++   + EL ++   P GKLR+  ++ L  +LL   L EF+  YP I++++   
Sbjct: 69  CQRILGEMAAAEQELSDTRSAPRGKLRV--SLPLVGSLLNPVLAEFIRQYPQIELEVDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +++  +  D  IR+ +  + S L+ R+L T H+   AAP YL+    P    +L +H
Sbjct: 127 DRRVEVIEEGFDAVIRVGE-TEDSRLMSRQLGTFHLQLVAAPGYLRQAGIPQQPADLRQH 185

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +    P   +  +W +A  D+ +G+   + +  NS  +++     G GIA LPD+ 
Sbjct: 186 ACLLYK--FPTTGKVESWPVADWDKILGDGLRTSVVCNSVDTLIYLAEQGQGIACLPDFA 243

Query: 249 VK 250
           VK
Sbjct: 244 VK 245


>gi|192359615|ref|YP_001982027.1| putative HTH-type transcriptional regulator YcjZ [Cellvibrio
           japonicus Ueda107]
 gi|190685780|gb|ACE83458.1| putative HTH-type transcriptional regulator YcjZ [Cellvibrio
           japonicus Ueda107]
          Length = 306

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 131/272 (48%), Gaps = 11/272 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +VA   SFT AA +L +SQS++S+ I GLE  +G++LF R  R ++LT  G +L 
Sbjct: 9   LSAFLMVAEEASFTRAAAKLGVSQSALSQTIRGLEERLGLRLFARTTRSVSLTPAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +      +++    E+ E   KP+G +RI        ++LQ  +  FL  YPDI I+L 
Sbjct: 69  ELIGPAMGQIDMGLEEITELRDKPAGTIRINADEYAVHSVLQPAVTRFLPEYPDIHIELA 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPLSIQEL 186
           +D    DI     D  +R R  + +  +I  ++   H M    +P Y      P ++ +L
Sbjct: 129 IDYGLTDIVSGRYDAGVR-RGGLVAKDMIAVQISPPHPMAVVGSPAYFARRSTPKTLHDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +H  I     +P   E F W+   ++   E R+     L  NS  SI    + G G+A 
Sbjct: 188 TEHTCINL--RLPTHGEHFPWV--FEKAGKEQRVKVEGSLVTNSIASIRDAALGGLGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVIT--PSFTVYFCY 273
           LP   V+D+    +++E + +   +F  Y  Y
Sbjct: 244 LPQAYVRDHLAAGQVIEVLASWRKTFEPYHLY 275


>gi|116250129|ref|YP_765967.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254777|emb|CAK05851.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 301

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 138/288 (47%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R LTLTE G+ 
Sbjct: 5   EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKSLGGMLLHRTTRKLTLTEDGTV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +  ++E    ++ E     SG +RIA  +  G+  L   L  FL  +P+I++ 
Sbjct: 65  FLGRAARIVREIEEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLAEHPEIELT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D++ +D + D  D  IR   PI  S L+  KL        A+P YL     P S+ +
Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPIADSRLVAWKLAHSRRLLCASPDYLARQGIPSSLAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H  I + +   + + D+ +  T D  I       L +N+   +    + G GIALLP
Sbjct: 184 LNSHRGIFYTN---RGVADWRF-QTFDGAIVVRAKLALGINNGDMLRDAAIAGLGIALLP 239

Query: 246 DYIVKDNPNLVRIME-DVI-TPSFT-VYFCYPEALKNTGKLKAFRNFI 290
            +I        R+ E DV   P    +Y  +PE    + KL+A  + +
Sbjct: 240 AFIAGPAIREGRLAEIDVGHKPEAEFIYMAHPEGRNPSAKLRAIADHL 287


>gi|34498758|ref|NP_902973.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34104609|gb|AAQ60967.1| probable transcriptional regulator, LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 298

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 128/273 (46%), Gaps = 10/273 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  V   GS + AA QL +  + + R++  LE  +G++L  R  R +  T++G   
Sbjct: 6   QLETFVAVVGLGSLSAAARQLGVVPAMVGRRLDALEERLGVRLLVRTTRSVAPTQEGEAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   L   +  +   S +  G LR++     G+  +  ++  F  L+P++++ L
Sbjct: 66  YEDCQRILADLTEAEAAVASGSGRARGHLRLSAPAGFGRRHVAPHVAAFQRLHPEVKVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  D  DCAIR+   +  S L+  +L   H    A+P YL     P ++++L
Sbjct: 126 DLSDRLVDLQRDRIDCAIRI-SDLSDSGLVAIRLAENHRVVVASPAYLAAHGAPRALEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  ++ G+      +   W   VD +P+       L+ N    +  + + G G+A   
Sbjct: 185 QRHQCLSLGE-----SQSRGWSFAVDGKPVNLKVSGALECNDGAVLHDWALQGLGLAWRS 239

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + VKD+     L  +++D  +P + VY   P+
Sbjct: 240 LWEVKDDLSEGRLATVLDDFSSPDYPVYAVVPQ 272


>gi|167564682|ref|ZP_02357598.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 305

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 150/302 (49%), Gaps = 35/302 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE G +
Sbjct: 8   DDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++  T ++   ++    ++  +   P G LRI+++   G+++L   L +F   YP + ++
Sbjct: 68  VYAWTEKILDDVDHLVEDVSTTRNVPRGTLRISSSFGFGRHVLAPALLDFNERYPQLNVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  IR+   I +  LI ++L T +    A+P YL     P  + +
Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPAYLARYGTPRQLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233
           L  H          +C+     +   D P G  R+      S ++V   LS       +Q
Sbjct: 187 LAAH----------QCLA----IKERDHPFGVWRLTARGETSSVKVGGALSTNHGEVAVQ 232

Query: 234 YCVLGSGIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + + G GI L    I +  P      L R++ D I P+  V+  YP  L  + K++   +
Sbjct: 233 WALAGRGIVLRS--IWEAGPLLASGELKRVLPDAIQPA-NVWAVYPARLAASAKVRVCVD 289

Query: 289 FI 290
           F+
Sbjct: 290 FL 291


>gi|148255791|ref|YP_001240376.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146407964|gb|ABQ36470.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 301

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 138/294 (46%), Gaps = 11/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+ F  V  +GSFT AA  L L Q +I+++I+ LE + G +LF R  R L  T +  +
Sbjct: 5   DALQTFIRVMEAGSFTQAAADLGLGQPAITKRIALLEEQFGCRLFVRTTRKLRPTAEADR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + ++  E+    E+  +   +    PSG LR+      G+        E+   YP++++ 
Sbjct: 65  VLKLAKEIVTLFESAGLPSPKRVGAPSGTLRMTVPTSFGRYFFGDIFAEYGRRYPEVRLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    + +D+     + AIR+   + SSSL+ R++ T+     AAP  L   R P    +
Sbjct: 125 IRFTEQFVDLVETGTELAIRI-GVLSSSSLVARRVGTVKRLLVAAPALLTRHRPPRLPND 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVL-GSGIAL 243
           L +   +T+  L PK    F    T    +G  P ++C   +    IM    L G G A+
Sbjct: 184 LRQLPCVTYSRLSPKNEWSFES-ETGRHVVGITPSLTCDDAD----IMSLAALEGLGAAV 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPD+       +  LV ++ D   PS  ++  YP+    + + + FR+ I  +A
Sbjct: 239 LPDWCAVGHIASGKLVHLLPDYDVPSLPLHVVYPDPQWMSHRARLFRDLIIERA 292


>gi|187923524|ref|YP_001895166.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714718|gb|ACD15942.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 298

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 146/306 (47%), Gaps = 20/306 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L+ + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVTVIDSGSITAAAEKLNQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGETFLQRARAILDAMEEAEESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  + + +D+     D AIR+ + +Q S+L  R L T  +   A+P YL    EP
Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRIGE-LQDSTLHARALGTSKLRVLASPAYLAEYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIG------EPRISCLQVNSYLSIMQ 233
            S++ L +H LI F        E  N W     R  G      EP I+    +S  ++ Q
Sbjct: 180 KSVEALREHRLIGF-----TAPEHLNRWPLREGRKGGAESLKIEPAITA---SSGETLRQ 231

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289
             + G GIA L D++   +     LV I+ +V+      V   Y ++    G+++ F +F
Sbjct: 232 LVLSGWGIACLADFMSAADVREKRLVPILGNVLADERQRVSAVYYQSASLAGRVQCFLDF 291

Query: 290 IFLKAR 295
           I  + +
Sbjct: 292 IAARVK 297


>gi|323494047|ref|ZP_08099163.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323311674|gb|EGA64822.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 305

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 6/246 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V  SGSF+ A   L+++ SS++R I  LE ++   LF R  R L LTE+G  
Sbjct: 3   DLIRIFNQVVESGSFSQAGSVLNMAPSSVARNIDNLEAQLKTTLFKRSTRQLLLTEEGQY 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H+    +     T   E++++  +P G LRI+     G   L   + +FL  YP ++++
Sbjct: 63  FHQQALPLLDNANTLVEEMKKTHRQPEGLLRISAFESFGNIFLAPLIPKFLQQYPKVKVE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LDN  +D++ +  D AIR+  P + S L  RKL+T      A+P YL N  E  +  +
Sbjct: 123 LELDNNVVDLNSENIDIAIRIGSP-KDSRLRARKLMTNQTLLVASPDYLNNHPEITAPDD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN +    LI +  +  +W     +   +  ++  L       ++   + G+G+ LL
Sbjct: 182 LADHNCL----LISQKRQRSHWHFQRGKVNKQVMVTGNLSSRGGSPVLWGALQGTGVLLL 237

Query: 245 PDYIVK 250
            D++VK
Sbjct: 238 SDWMVK 243


>gi|294142453|ref|YP_003558431.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328922|dbj|BAJ03653.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 303

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 145/294 (49%), Gaps = 17/294 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +  + +S+ISR+++ LE ++ ++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGIPKSTISRKVAQLEEQLDVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    +  ++E  +  ++ ++   SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCISIRDEIEAAKATIENTNNHVSGSLRIAIPVSFSQELIANLCSSFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + ++ +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDSEVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKANGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           QEL  HN I  G      + P    +   + +  R +        +VNS + + +  +  
Sbjct: 182 QELANHNGILLGTSRSAPIWPLGKGNRKTMVSFKRKV--------RVNSAVMVKKLSLDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GIA+L + + K+   + +LV I+++    +F VY  Y    +    +  F +F
Sbjct: 234 FGIAMLSNSVCKNELASGSLVPILQEWPIEAFKVYGVYSSRRQLATNISVFLDF 287


>gi|323526521|ref|YP_004228674.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323383523|gb|ADX55614.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 300

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QIETFVTVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H ++  +  +    VK SG LR++     G+  +   +  F + +PD+ I L
Sbjct: 66  LEDCQRIIHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P S+ +L
Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPSYLSRRGAPHSLADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +  G       +   W+   D  +   ++S  ++ +    + ++C+ G G+A   
Sbjct: 185 AQHNCLALG---ASANQQRGWVFQQDGKVVSIKVSGTMECSDGAVLHEWCLEGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGADIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|224824697|ref|ZP_03697804.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603190|gb|EEG09366.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 309

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 19/299 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +AR GSFT AAE +  ++S IS+ +  LE ++G  L  R+ R + LTE G +
Sbjct: 11  DALLAFDALARLGSFTAAAEAIGCAKSRISQLVKDLEHDLGTVLVLRNTRRVALTEAGRR 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +++   L+  + +++E+     G LR+++T+   Q LL   L E   L+P ++++
Sbjct: 71  LACHAAQLRSMLDKVRPDIEEAQGAIGGPLRVSSTMSFAQYLLAPLLGELAELHPALEME 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N+  D      D  +R R  +    L+ + +  ++   YAAP YL     P + ++
Sbjct: 131 LVAENRLQDPVEAGLDFCLRTRA-VHDDRLVAKSIGFVYEELYAAPAYLARAGMPQTPED 189

Query: 186 LDKHNLI--TFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L KH L+  ++ +  L  +  +D  +++   RP        L  + Y  I      G GI
Sbjct: 190 LLKHQLLHNSYNETGLDWRLEKDGQFVSLAIRPT-------LLCDQYAVIANAACAGVGI 242

Query: 242 ALLPDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LLP Y+V  +P L R     ++    T  + V+  YP       K +AF   +  + R
Sbjct: 243 GLLPQYVV--SPQLARGELCPVLPGWRTSGWPVFLVYPYRHPMPKKYEAFLQRVVPRLR 299


>gi|254249529|ref|ZP_04942849.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124876030|gb|EAY66020.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 342

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 148/300 (49%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF +V R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R +T+T+ G +
Sbjct: 43  DDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRVAMLEAQLGTRLLHRSTRRMTVTDAGER 102

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LR++++   G++++   L +F   YP + ++
Sbjct: 103 VFARAEKILDDVDHLVEDVSTTRTVPRGTLRMSSSFGFGRHVVAPALLDFSARYPQLNVR 162

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  +R+   I +  LI R+L T H    A+P YL     P S+ +
Sbjct: 163 LDLFDRLVDVAGEGYDLDVRIGDDI-ADHLIARRLATNHRVLCASPDYLARRGTPRSLAD 221

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI------MQ 233
           L  H+ +   +               D P G  R++       ++V   LS       +Q
Sbjct: 222 LTSHDCLAIKER--------------DHPFGVWRLNVRGETVTVKVGGALSTNHGEVAVQ 267

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + G GI L   +      +   L R++ +   P+  ++  YPE +  + K++   +F+
Sbjct: 268 WALAGRGIVLRSIWEAAPLIERGELCRVLPEATQPA-NIWAVYPERVAASAKVRVCVDFL 326


>gi|323525875|ref|YP_004228028.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382877|gb|ADX54968.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 306

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 138/304 (45%), Gaps = 22/304 (7%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +   GSF  A   L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERMLNGMGVLTAIVDCGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +     +   LE       + +    G+LR+       + +L   L  F+ 
Sbjct: 61  TLTDEGRRFYEQIVPLLSGLEEAAASAAQGATAVRGRLRVNLDPFFSRLVLGPRLGGFVD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+Q++LI  ++  D+  D  D AIR  +P   SSLI RKL+   +   AAP YLK  
Sbjct: 121 RHPDLQLELITRDQLGDMVSDGFDVAIRFGEP-PVSSLIARKLLDTRVLTVAAPAYLKKH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYL 229
             P +  EL+  +H  I F D  P     F+W     R      P G      L VN   
Sbjct: 180 GHPANPAELESGQHACIKFRD--PLTGYPFSWEFHRGRKKMVITPQGR-----LTVNDVG 232

Query: 230 SIMQYCVLGSGIA---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++   C  G G+A    L    +  +  +V +  D     + +Y  YP       K++AF
Sbjct: 233 TLHSVCTAGQGVAQTLALGAESLLGSGKMVELFPDWGDEVYPLYALYPSRHHPPAKVRAF 292

Query: 287 RNFI 290
            +FI
Sbjct: 293 LDFI 296


>gi|146310215|ref|YP_001175289.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145317091|gb|ABP59238.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 299

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 141/290 (48%), Gaps = 20/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA +  L +SS+S+++S LE +VGI+L  R  R L LT  G    
Sbjct: 8   MALFALVAEMGSFTAAARKAGLPKSSVSQRVSQLEQQVGIRLLNRTTRKLNLTFAGEHYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E  +  +Q     PSG+LRI     +G  LL     +F   YPD+ + + 
Sbjct: 68  VHCREMLAASERAEYAIQRLRDNPSGRLRITCPAGIGATLLAHLNADFQRRYPDVSLDVC 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186
           + +  +D+     D A+R  KP Q SSLI R +     +  A+P YL  C EPL   ++L
Sbjct: 128 ISDDLLDLVESGFDVALRTGKP-QDSSLIGRMIGHCPRYMLASPDYLARC-EPLEHPRQL 185

Query: 187 DKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  IT       L+ +  ED+  L           IS    ++ +   +  + G+GI 
Sbjct: 186 VEHRCITHKAWPEWLLRRESEDYRHLPD------NAHIS----DNLVYARESAIAGAGIT 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LLP ++++D   N  LV+++ +       ++  YP    N+  L ++ +F
Sbjct: 236 LLPAFLLEDKLENGALVQVLSEWNVEGNELWLAYPSRKLNSPALMSYVDF 285


>gi|190893111|ref|YP_001979653.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190698390|gb|ACE92475.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327192563|gb|EGE59513.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 299

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 135/276 (48%), Gaps = 17/276 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   A +G F+ AAE+LHL++S++S+ I+ LE  +G++LF R  R  +LT++G   +  
Sbjct: 9   IFVQTAEAGGFSAAAERLHLTRSAVSKTIARLEQRLGVRLFNRTTRTQSLTDEGRFFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 ++   + +L+    +  G+LR++  +  G+      L   L  +PD+++     
Sbjct: 69  CLRAIEEIRIGEAQLESGRREVRGRLRVSMPVLFGRQCAAPILTRLLDDHPDLELDFSFS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  D  D A+R      +  L+ R +    M   A+P YL+    P ++++L  H
Sbjct: 129 DRIVDLLEDGFDLAVRNGPLKDNPDLMARAIAGQSMTVCASPAYLEKYGAPQTLEDLAHH 188

Query: 190 NLITF--GDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243
             I +  GD       D  W+       G PR     S L+++   SI    V G G+A 
Sbjct: 189 QAIVYRRGD------NDRPWIFPA--AAGPPREILPKSRLRLDDLASIADAAVEGRGLAW 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           L  ++V+D   +  LVR++ D+ +  F  Y  +P +
Sbjct: 241 LTCWLVRDRVLSGELVRVLTDMPSNIFQAYAVWPRS 276


>gi|187924121|ref|YP_001895763.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715315|gb|ACD16539.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 302

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 135/288 (46%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V  +G F  AA+ L +  +++S+ +  LE  +G+KL  R  R +++T  G+  +
Sbjct: 7   IRIFARVVETGGFGRAAQSLQMPNATVSKWVKSLEDHLGVKLLERSTRSVSVTTDGTAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +  +L+  +  L      P G LR+ +       +L   L EF   YPDIQ++L 
Sbjct: 67  ERTRHLLSELDDIEATLGRDRANPRGVLRVDSGGSTASGILIPALPEFCARYPDIQVRLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           + ++  D+  +  DCAI  R      +L+ + + T+     A+P YL     PL  +E+ 
Sbjct: 127 VTDRTADLIAENIDCAI--RSTADDPNLVTQAIGTLRWTTCASPAYLAEHGTPLHPREIV 184

Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            DKH +  +           ++L   +R + +   + + V+   + +   + G GI    
Sbjct: 185 DDKHAVAGYFSASSGLAPPLHFLRDGERIVLDKVRNTVMVSESNAHLATALAGLGIVHTL 244

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D++V+       LV I+ D       VY  YP + + + KL+ F +++
Sbjct: 245 DFMVRPAVARGELVPILTDWRPDPLQVYLAYPPSRRYSTKLRVFADWV 292


>gi|313498191|gb|ADR59557.1| Transcriptional regulator, LysR family protein [Pseudomonas putida
           BIRD-1]
          Length = 289

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 141/283 (49%), Gaps = 7/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  + R+ +   AA+QL + Q+++SR+++GLE  +G +LF R   GL LT+ 
Sbjct: 1   MNWDDVRIFLTIQRASTLRGAAQQLVIDQTTVSRRLTGLERALGSRLFLRTTGGLVLTDT 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++ R+  ++     + +   + +  + +G++R+ TT  L  + +   ++     +P++
Sbjct: 61  GQEVLRMAEDMERMAVSFERRGEGADARVAGEVRVTTTDALAVDFVLPAIEHLRASHPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    + +D++   AD A+R  +P Q   LI R+L    +  YA   YL+   EP  
Sbjct: 121 RVILSTTTRLLDLARREADIAVRTLRPEQ-PDLIVRQLGCWEVGLYATRSYLEKHGEPQP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q L  H++  +   +    +  N LA   R  G       +++S L +  +   G  I 
Sbjct: 180 GQGLANHDIALYQQGVTSRQD--NTLAGESRAQGR---VVAELDSSLMLATFVRAGLAIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLK 284
            LP+Y+ + +P LVR+        S+  +    + L  T +++
Sbjct: 235 ELPEYLAQRDPALVRLWPGCRRAKSYEAWLVLHQDLARTARVR 277


>gi|301385008|ref|ZP_07233426.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060456|ref|ZP_07251997.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302133285|ref|ZP_07259275.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 303

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 139/300 (46%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + +F  V RSGSF  AA QL +  +++SR+I  LE ++G +L  R  R L LT
Sbjct: 1   MIADLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRIQHLEVQLGTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +   +     L +   +L     +PSG++RIA   D         + +FL  YP
Sbjct: 61  QTGEHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+        A+P YL     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P S++ L  H+ ++     P     +  L   D  I + ++S     N+  ++ +  + G
Sbjct: 180 PDSLESLQAHDCVSAA--YPGGSTTWRMLGP-DAKIHDVQLSSRFNANTAQALRKATLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIALLP  +++    N  LV ++      S  ++  YP   +    + AF   +  K R
Sbjct: 237 LGIALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLR 296


>gi|260772457|ref|ZP_05881373.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260611596|gb|EEX36799.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 291

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 138/289 (47%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F +V   GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR LTLTE G +
Sbjct: 4   DDLNLFRLVVEHGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R  S +  +L +    + +     SG +R++   +L + ++      F+  YPDI ++
Sbjct: 64  FFRDCSPLLQRLASMAEAITDECRGASGTIRLSAPENLTKRMMMPMFNAFMHQYPDINLE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N  + +     D   R+  P + SSLI RK+  +     A+P YL     P   ++
Sbjct: 124 LTTSNHAVQLDPTEWDVIFRV-GPQRDSSLIARKISEVKDILVASPLYLAKHPTPTHAEQ 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +++L+    L+   + +      ++  +G  + S L V     +   C  G GI L+P
Sbjct: 183 LSQYSLLKGDPLLKWQLCNDKGETCINNDVGRFQASTLNV-----VRSACSDGLGITLMP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           D ++K+   + +LVR++ D       +Y  Y        K++ F +F+ 
Sbjct: 238 DVMLKEFLADGSLVRVLPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|309779596|ref|ZP_07674355.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308921537|gb|EFP67175.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 301

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 133/262 (50%), Gaps = 12/262 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V   G F+ AA    ++ S++S+ ++ LET +G +L  R  R L LT +G+
Sbjct: 9   FGEMEVFVRVVEEGGFSAAARACRMTPSAVSKLVARLETRLGARLVNRSTRRLQLTPEGA 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +  V   L+  + E   +  +PSG+LRI + + +G ++L   +  FL  +P++ +
Sbjct: 69  AFYERSVTVLADLDEAERE-ASAGAQPSGRLRINSNVPVGTHVLLPIVPAFLACHPEVSL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  D  D A+R   P++SS L+ RKL    +   A+P YL     P +  
Sbjct: 128 DIALTDRVVDLLEDRTDVALR-SGPLKSSRLVARKLGQTRLMVVASPAYLARAGTPRTPA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L +HN +TF  +  +    F      T   P G  +IS  +     ++    V G G+A
Sbjct: 187 DLARHNCLTFSYVRAENAWPFAKRGRRTAFTPQGNTQISDGE-----ALRAVAVAGLGLA 241

Query: 243 LLPDYIVK---DNPNLVRIMED 261
            L ++ V+   +   LV ++ED
Sbjct: 242 RLAEFQVRADLEAGRLVPVLED 263


>gi|206558863|ref|YP_002229623.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198034900|emb|CAR50772.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 349

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+    V   N+   + Q+ +LG G+A+
Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|220916837|ref|YP_002492141.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954691|gb|ACL65075.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 301

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 123/250 (49%), Gaps = 11/250 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++ VF  V  +GSFT AA  L L +SS+SR ++ LE ++GI+L  R  R L+LT+ 
Sbjct: 1   MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEADLGIRLLQRTTRRLSLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  T +    L     E      +P G +R+   +DL  +L +     FL  +P +
Sbjct: 61  GRAYYERTRDALAGLREASEEAAALGAEPRGTVRVTAPVDLAPDLAR-LTDAFLRAHPQV 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L  + +D+  +  D AIR    +  SSL+ RKL    +  +AAP YL+    P  
Sbjct: 120 RVEVSLTARYVDLVKEGFDLAIRA-GVLADSSLLARKLSDSALALFAAPSYLQARGRPRR 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
           + +L  H+ +    L     E   W  T  R  GE +++       + +  +    V G+
Sbjct: 179 LADLAGHDCL----LYRAGPETAVWRLTGRR--GEEQVTVHGRAAADEFAFVRGMLVAGA 232

Query: 240 GIALLPDYIV 249
           GIAL+P  +V
Sbjct: 233 GIALVPTGMV 242


>gi|206560483|ref|YP_002231247.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198036524|emb|CAR52421.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 301

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 131/273 (47%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LRI+     G+  +   + EF + +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSVGHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P+++ EL
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPVTLAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R++  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWAFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + V ++     LV +++    P   ++  +P+
Sbjct: 242 WWEVGEDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274


>gi|298489035|ref|ZP_07007058.1| Transcriptional regulatory protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156533|gb|EFH97630.1| Transcriptional regulatory protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 297

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 128/279 (45%), Gaps = 17/279 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L VF  VAR  SFT AA  L +SQS+IS  I  LE  +GI+L  R  RG + TE G
Sbjct: 5   DFNSLAVFITVARERSFTKAAAHLGVSQSAISHSIRSLEERLGIRLLARTTRGASPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       Y  +ET    L E   KP+G +RI +       +L   L   L  YPD+ 
Sbjct: 65  ERLLVSLVPYYEGIETEIAALGELRDKPAGTIRITSPDHAASTILWPKLSRLLPEYPDLT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +  + IDI  +  D  +R+   +    +  R      M    AP Y  +  +P   
Sbjct: 125 LEINIGYRLIDIVAERFDAGVRIGDQVAKDMIAVRISPDFRMAVVGAPSYFAHRAKPQIP 184

Query: 184 QELDKHN-----LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           Q+L  HN     L T G L       + W  +   + +       +  ++   IM   + 
Sbjct: 185 QDLTTHNCANLRLPTHGGL-------YAWEFSKAGKALHVQVSGQMIFSNSPQIMAAALQ 237

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           G G+A  P+ +V+   ++  L+R++ED  +P+F  Y  Y
Sbjct: 238 GYGLAYAPEDLVQAYVEDGQLIRVLED-WSPTFPGYHLY 275


>gi|126441686|ref|YP_001058473.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126221179|gb|ABN84685.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 299

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP I ++
Sbjct: 65  LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H L+ +       +  + W+    V R     R++   VNS  + +  C+ G G+  
Sbjct: 184 LERHRLVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ D       +   YP     + + + F  ++
Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290


>gi|311105010|ref|YP_003977863.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310759699|gb|ADP15148.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           53 [Achromobacter xylosoxidans A8]
          Length = 307

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 148/287 (51%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A  QL +S S+I + ++ LE ++G++LF+R  R +TLT +G      
Sbjct: 9   VFVQVAETRSFVAAGRQLGVSASAIGKSVARLEAKLGVRLFHRSTRSVTLTAEGMLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  ++EL  ++  P G+LR+  ++ L   L+   L EF+  YP+I++ L   
Sbjct: 69  SRRILAEIEAAELELSRAAGAPRGRLRV--SLPLVSGLVLPILGEFMREYPEIELDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R+L +  +   A+P YL +   P +  +L  H
Sbjct: 127 DRMVDVIEEGFDAVVRTGEP-ADSRLSARRLGSFQILLVASPAYLASRGTPRTPADLLHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALLPD 246
           + + +    P   +   W   + +  GEP +     +  N+  +   + + G GIA LPD
Sbjct: 186 SCLHY--RFPSSGKLETW--ALRQAEGEPELQLPVSMICNNIETRACFALQGLGIAYLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++   + +LV+++      +   +  +P + + + K++A  +F+
Sbjct: 242 FAIREPLADGSLVQVLAGQAERTNVFHVLWPASKQPSPKVRALVDFL 288


>gi|241207306|ref|YP_002978402.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861196|gb|ACS58863.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 301

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 137/288 (47%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V   GS + AA +L LS+S +S +++ LE  +G  L +R  R LTLTE G+ 
Sbjct: 5   EGIAAFVAVVEVGSVSEAARRLRLSKSVVSERLAELEKSLGGVLLHRTTRKLTLTEDGAV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +  ++E    ++ E     SG +RIA  +  G+  L   L  FL  +P+I++ 
Sbjct: 65  FLGRAARIVSEIEEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLAEHPEIELT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D++ +D + D  D  IR   PI  S L+  KL        A+P YL     P S+ +
Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPIADSRLVAWKLTRSRRLLCASPDYLARQGIPSSLAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           LD H  I + +   + + D+ +  T D  I       L +N+   +    + G GIALLP
Sbjct: 184 LDSHRGIFYTN---RGVADWRF-QTPDGAIVVRAKLALGINNGDMLRDAAIAGLGIALLP 239

Query: 246 DYIVKDNPNLVRIME-DVI-TPSFT-VYFCYPEALKNTGKLKAFRNFI 290
            +I        R+ E DV   P    +Y  +PE    + KL+A  + +
Sbjct: 240 AFIAGPAIREGRLAEIDVGHKPEAEFIYMAHPEGRNPSAKLRAIADHL 287


>gi|262173272|ref|ZP_06040949.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|261890630|gb|EEY36617.1| transcriptional regulator [Vibrio mimicus MB-451]
          Length = 300

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P+++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPEVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S I RKL  + M   A P YLK C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFIARKLTDVAMSTLATPAYLKQCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +T G +     +      T+D PI       LQ  +   +++  +  +GI  +P 
Sbjct: 190 AEHRCLT-GSVKRWSYQHNTTQQTIDVPID----GDLQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  ++      LV +  D   PS      Y +      +LK F  F
Sbjct: 245 FYCQEEIARGELVEVFPDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|186471537|ref|YP_001862855.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197846|gb|ACC75809.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 301

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 134/277 (48%), Gaps = 7/277 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D++ L  F  VAR  +FT AA QL +SQS++SR ++G+E  +G++L  R  R ++LT
Sbjct: 1   MKEDFNDLVGFMTVARERNFTRAAAQLGVSQSALSRTVAGVEKRMGLQLLARTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +  + ++E     L+  + +P G +RI TT       +   L+  L  YP
Sbjct: 61  EAGEQLLAAIAPRFEEIEAEVDSLRAMTNRPGGTVRITTTDYAANTYVWPRLQPLLREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L+ D    DI  D  D  +RL   +    +  R    + M     P YL++  + 
Sbjct: 121 ELKVELVNDYGLADIVADRYDIGVRLGDQVAKDMIAVRIAPDMTMAIVGCPSYLESRPQA 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + Q+L  HN I     +P      +W     R   + R+   L  N+   ++   + G 
Sbjct: 181 KTPQDLTLHNCINL--RLPTRDSLLSWELRKGRRELQVRVDGQLTFNNVYQMVDAALAGF 238

Query: 240 GIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273
           G+A +P  IV+D+    R   ++ED   P+F  +  Y
Sbjct: 239 GLAYVPKDIVEDHVRTGRLCWVLEDWY-PTFVGHHVY 274


>gi|299068859|emb|CBJ40100.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 293

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 118/247 (47%), Gaps = 7/247 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++  F  AAE L +  S++SR+I  LE  +G++L +R  R + LTE G  
Sbjct: 6   NDMALFVEVVKAKGFRGAAEALGMPNSTLSRRIGALEKAIGLRLLHRTTRKIELTEAGLI 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      +L E   +PSG LR +  +D     L   + EF  LYP I   
Sbjct: 66  YFERCKRIVDEARLAHEQLGELLAQPSGVLRASLPVDFAVTYLAPLIAEFASLYPGITFD 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D+  +  D AIR+ +P ++S LI R L ++  + YA+P YL+   EP +  +
Sbjct: 126 FDLTPRQVDLVSEPFDVAIRMGEP-ENSQLIARPLASLQANLYASPAYLERSGEPRTPAD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  +  G L            TV  P+G        +NS   I +   L  GI L+P
Sbjct: 185 LGRHECL--GMLKVGSWTLHEGAHTVTVPVG----GRFTLNSVGMIRRLATLDMGIILVP 238

Query: 246 DYIVKDN 252
           + IV D+
Sbjct: 239 EEIVADD 245


>gi|307729875|ref|YP_003907099.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584410|gb|ADN57808.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 306

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 139/300 (46%), Gaps = 14/300 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +   GSF  A   L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERMLNGMGVLTAIVDCGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +     + + LE       + +    G+LR+       + +L   +  F+ 
Sbjct: 61  TLTDEGRRFYEQIVPLLNGLEEAAASAAQGATAVRGRLRVNMDPFFSRLILGPRVGAFID 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ ++LI  ++  DI  +  D AIR  +P   SSLI RKL+   +   AAP YLK  
Sbjct: 121 RHPDLHVELITRDQLGDIVSEGFDVAIRFGEP-PVSSLIARKLLDTRILTVAAPSYLKKH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQ 233
             P +  EL+  +H  I F D  P     F+W     R   I  P+   L VN   ++  
Sbjct: 180 GHPANPAELENGRHACIKFRD--PLTGYPFSWEFHRGRKKMIVTPQ-GRLTVNDVGTLHS 236

Query: 234 YCVLGSGIA---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            C  G G+A    L    +  +  +V +  D     + +Y  YP       K++AF +FI
Sbjct: 237 ACAAGQGVAQILALGAESLLASGKMVELFPDWADEVYPLYALYPSRHHPPAKVRAFLDFI 296


>gi|144900257|emb|CAM77121.1| regulatory protein, LysR:LysR, substrate-binding [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 329

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 140/290 (48%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  VA SGSF+ AAE L+L ++S++  +  +ET VG +L  R  R + LT  G+   
Sbjct: 35  LRVFIRVAESGSFSRAAEALNLPRASVTTAVQAVETRVGTRLLSRTTRRVALTPDGTAYL 94

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++      ++ + +  G+L+++    L  + L   L  FL  YP +Q++L 
Sbjct: 95  ERCRRLLDDVDDMDALFRQGADQIKGRLKVSLPERLANHTLIPALPAFLARYPGVQVELA 154

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR  + ++ S LI R+L  +   ++A+P YL     P+   +L 
Sbjct: 155 VTDRFVDLVGEGVDCVIRAGE-LRDSRLIGRRLGAMVQGSFASPAYLSAHGTPIEPADLP 213

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243
            H LI +   +     DF+W        G PR     + L V++  + +   + G G+  
Sbjct: 214 GHRLIGY---VGPQGADFSWEYM---EAGRPRQIVVPARLAVDNAEAQVAAAMAGLGLIQ 267

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y ++    +  LV ++     P   +   YP     + K+ AF +++
Sbjct: 268 VPVYGIRPQVTDGRLVEVLAGYRPPPLPMTVLYPHRRHRSPKVTAFIDWV 317


>gi|91794244|ref|YP_563895.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91716246|gb|ABE56172.1| transcriptional regulator [Shewanella denitrificans OS217]
          Length = 298

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 148/298 (49%), Gaps = 21/298 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA   SFT AAEQL+LS+  +SR +  LE  + ++L +R  R ++LT +G +  
Sbjct: 7   MRSFVEVADCASFTQAAEQLNLSRLQVSRHVKELEQWLNLRLLHRTTRSVSLTLEGEETL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +   Q   Q+ + K  G +R+A+ I LGQ+ L   + EF+ L+P+++ Q +
Sbjct: 67  SYCQEILSGVAQMQSRAQQHNTKLVGTIRLASPIGLGQHKLFDVVNEFIALHPNVKFQFV 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L +    +  +  D A+R   +P    +LI R+L+ I     AAP YL++    ++I ++
Sbjct: 127 LADSLAAMVGERVDIALRYTHQP--DDNLIARRLMQIDSVICAAPEYLEHHEPIINIADI 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN      L+      ++WL  +D    +  +   LQ N    +++  +L  G+  LP
Sbjct: 185 GRHNC-----LVHTSQSQWHWL--IDNQHQQLNVGGNLQANDMGVLIKAALLAKGLVCLP 237

Query: 246 DYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +   NP      L+ ++   ++P   ++  Y   L  + +L   R FI   A+ W+
Sbjct: 238 ADLA--NPYLADGQLIEVLPQYVSPGKPLWAVY---LSRSYQLLHVRAFIDFIAQKWQ 290


>gi|310815366|ref|YP_003963330.1| Transcriptional regulator [Ketogulonicigenium vulgare Y25]
 gi|308754101|gb|ADO42030.1| Transcriptional regulator [Ketogulonicigenium vulgare Y25]
          Length = 302

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 10/299 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  R+   V   GSF   AE+  +S    S+ IS LE+++G++L  R  R L+LTE G  
Sbjct: 5   DADRLLISVVDLGSFARGAERHGVSPGQASKVISRLESDLGVQLLSRTTRALSLTEAGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V  ++E     +++++ +PSG+LR+   +  G + L   L EF   YP+I + 
Sbjct: 65  YVERMRRVVEEVEAIDASVRQATGRPSGRLRVTAPLTFGVSTLTPILVEFARAYPEITLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ + +  +  D A+R+  P+  SSLI RKL  I +   A+P YL     P     
Sbjct: 125 ISFSDRVVSLVDEGFDAAVRIGHPVD-SSLIARKLTDIRIVLGASPGYLAAHGTPDQPAA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ +   +        FN   T    +  P  S + +++  S  +   LG GIA +P
Sbjct: 184 LVGHDCVIDANFTDATRWRFN---TAGGRVSVPVQSRIVLSNAESCARAASLGLGIARIP 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298
            ++      +  LV +M         ++  +P       KL++F  F+   F    DW+
Sbjct: 241 SFVAGPMFQSGALVPLMTQTEDDPVGLFIVFPPGRHLPLKLRSFVEFLAGHFRGTPDWE 299


>gi|317493997|ref|ZP_07952413.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917770|gb|EFV39113.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 300

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 135/286 (47%), Gaps = 18/286 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +V   GSFT AA +  L +SS+S+++S LE ++G++L  R  R L LT  G +  
Sbjct: 8   MALFALVVECGSFTSAALRAGLPKSSVSQRVSNLEQQLGLRLLNRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + LQ     PSG+LRI     +G  LL     +F L YP++ +++ 
Sbjct: 68  VHCREMIQAAERADLSLQRLKDNPSGRLRITAPAGIGATLLAHVCSDFRLSYPEVSLEIF 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+  +  D A+R  KP Q SSL+ R+L     +  A+P YL    E    ++L+
Sbjct: 128 ISDVMRDLVQEGFDVALRTGKP-QDSSLVGRRLGYSPRYLLASPSYLAQHPELEHPKQLE 186

Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I        ++ +  E + W   +D             ++ L + +  + G+GI L
Sbjct: 187 RHQCIAHRAWHEWVLQRGGEFYRWELPMDHA----------ADNLLYVRECVLAGAGITL 236

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP ++ +   +   LVR++         +Y  YP    N+  L  F
Sbjct: 237 LPAFLSQELVEQGRLVRVLPQWEAEGNELYLVYPSRKLNSPALDRF 282


>gi|307729300|ref|YP_003906524.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583835|gb|ADN57233.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 300

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 136/288 (47%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QIETFVTVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H +   +  +    VK SG LR++     G+  +   +  F + +PD+ I L
Sbjct: 66  LEDCQRILHDMHNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P S+ +L
Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPSYLSRRGAPHSLADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +  G       +   W+   D  +   ++S  ++ +    + ++C+ G G+A   
Sbjct: 185 AQHNCLALG---ASANQQRGWMFQQDGKVVSIKVSGTMECSDGAVLHEWCLEGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGADIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|171316380|ref|ZP_02905600.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171098509|gb|EDT43311.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 349

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+    V   N+   + Q+ +LG G+A+
Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|28869807|ref|NP_792426.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853052|gb|AAO56121.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 301

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 133/292 (45%), Gaps = 14/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+  +
Sbjct: 7   MRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGTAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   EV   +  ++   +++  +P+G LRI   +  G  LL   L  F   +PD+++ L+
Sbjct: 67  QRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFPDVKLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D AIRL    QSS LI R L    +   AAP YL     P   ++L 
Sbjct: 127 LTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAAPDYLARHSAPTRPEDLR 186

Query: 188 KHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240
            HN + F    P   E       W  T   P GE  +     +  N+   + Q    G G
Sbjct: 187 AHNCLAFA--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAARAGMG 242

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + +LPD +V+ +     LV ++ D   P   +   Y +      KL++F  F
Sbjct: 243 VVMLPDALVQRDLQEGRLVALLPDYHLPRRPMNLLYVQDRYRLPKLRSFVEF 294


>gi|264677076|ref|YP_003276982.1| cyclolysin secretion ATP-bindingprotein cyaB [Comamonas
           testosteroni CNB-2]
 gi|262207588|gb|ACY31686.1| cyclolysin secretion ATP-bindingprotein cyaB [Comamonas
           testosteroni CNB-2]
          Length = 297

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 135/286 (47%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF+ VA+ GSF  A   L LS ++IS+ I+ LE  VG +L  R  R + LTE+G    
Sbjct: 7   LQVFHRVAQRGSFAEAGRSLGLSPAAISKNIAELEAHVGTRLIQRTTRRMALTEEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +     L      L      PSG L+++  +      +  ++  FL  YP++Q+ L 
Sbjct: 67  EHVTRALDALADADSALCPFKAAPSGLLKVSAPMTFTLTQISSSIPTFLERYPELQLDLH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +DI  +  D AIR    ++ SSLI R L ++     AAP Y +    P +  +L+
Sbjct: 127 LDDRRVDIVREGFDLAIRGSDRLEDSSLIARPLTSMSHVLCAAPGYFEKRGRPHTPADLN 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               I F         +F     ++      R S   V+S L++      G G++L+P  
Sbjct: 187 GLEHIRFSLSGHADTWEFEQGGRMESVAVNARYS---VSSSLAVRDALRAGFGVSLIPRP 243

Query: 248 IVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+++    R   +++D  T   T+Y  YP     T KL+A  +F+
Sbjct: 244 YVEEDLRTGRLQAVLDDWSTVKTTLYAIYPSRQHVTPKLRALLDFL 289


>gi|260775725|ref|ZP_05884621.1| transcriptional regulator LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608141|gb|EEX34310.1| transcriptional regulator LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 300

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 145/294 (49%), Gaps = 11/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V +  SF  AA +L +S+S++++++  LE  +G++L +R  R ++LTE G  
Sbjct: 5   DAIPFFLEVVKHASFAQAARELGVSRSAVNKRVVQLEEGLGVRLLHRTTRQVSLTEAGMN 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H+  ++ Y+ L+  +        +  G L+I+  +  G+ ++   +  FL  +  IQI 
Sbjct: 65  FHQHVNQAYYWLQKAEDAATSQQSQAIGTLKISAPMSFGRLVVAPIIPTFLEQFSGIQID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK-NCRE-PLSI 183
           + + +  +DI     D AIR    +  SSLI RKL+       A+P Y + N R  P   
Sbjct: 125 MTMSDDYVDIVAGGYDLAIR-GGDLDDSSLIARKLIKSRSVVCASPLYFESNARSVPSHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +EL +HN +T+        E   W+      I    ++   +VN+  +++     G GIA
Sbjct: 184 RELIQHNALTYR----HTSETAEWVFAQGHEIESISVTGNYRVNNSEALLSATTQGLGIA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LPD+I +    +  L++++   + P  ++Y  +PE      KL+ F +F+  K
Sbjct: 240 RLPDFIARPYLHSGELLQLLPQYVMPEKSIYALFPERDHMPIKLRVFLDFLTQK 293


>gi|238761173|ref|ZP_04622150.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238761426|ref|ZP_04622402.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238700400|gb|EEP93141.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238700653|gb|EEP93393.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
          Length = 300

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 144/290 (49%), Gaps = 10/290 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L VF  VA + SF  A   L +S S++ + I+ LE  +G++LF+R  R + LT +G
Sbjct: 10  NLSSLTVFVQVAETRSFVVAGRVLGVSASAVGKSIARLEARLGVRLFHRSTRSIALTSEG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +     +  +  ++E  ++E+ + + KP GKLR+  +  L   LL   L +F+L YPDI 
Sbjct: 70  AIFLERSRRILAEVEAAELEMLQLADKPRGKLRV--SFPLASTLLLPVLADFMLAYPDIV 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ +D+  +  D  +R  + +  S L  RKL   ++   A+P YL+   EPL  
Sbjct: 128 LDLDFSDRIVDVVEEGFDAVVRTGE-LTDSRLSARKLGQSNVLLVASPAYLEQYGEPLHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I      P   +   W    +  +  P IS +  N+  + M + + G GIA 
Sbjct: 187 SELANH--ICLHYRYPNSGKLETWPLPYEPDLQIP-IS-MVCNNIETRMCFALRGLGIAC 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPD+ + +      L  +++  +  + +++  +P     T KL+ F +FI
Sbjct: 243 LPDFSMGNALVEGKLRTLLDGYMKRTVSLHVVWPSGRYITPKLRVFIDFI 292


>gi|206559768|ref|YP_002230532.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035809|emb|CAR51700.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 307

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 134/290 (46%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA+ L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAKAADLLGVSQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAELIENEASAQALEPHGLVRVNAPMSFGLRHLSPVLPAFLERYPRVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  S+L  R+L  +     A+P YL     P   
Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LNDSTLRSRRLCAVRRPLVASPAYLDRRGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++++H  +T+ +L       F   A+ D  +G      ++ N+   I+   V G G+AL
Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRHPASGDE-VGVSVHGRIRTNNADVILPALVGGHGLAL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++V D      L  +M D       V    P  +    ++    +F+
Sbjct: 244 QPEFLVWDAMQRGELEEVMSDWKIADINVNLVTPPGMLRAARVTVLLDFL 293


>gi|171320993|ref|ZP_02909982.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171093739|gb|EDT38881.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 296

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 137/291 (47%), Gaps = 13/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G  
Sbjct: 7   NGIAAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEGRH 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +       +  +  S+ +P GKLR++  + +G   L   L EF   YPD+++ 
Sbjct: 67  FYERCQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELD 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     P +  +
Sbjct: 126 LDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRAPHD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIA 242
           L+ H+ + +    P   +  +W LA  D   G P    + +  N+  ++    + G GI 
Sbjct: 185 LEAHDCVRY--CFPTTGKLQDWALAARD---GTPLKLRTAMTCNNMEALRGAVMAGLGIG 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +PD++ +   D   LV +++D           +P + + + KL+ F +F+
Sbjct: 240 YMPDFLARDALDTGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 290


>gi|170728259|ref|YP_001762285.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813606|gb|ACA88190.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 298

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 151/289 (52%), Gaps = 6/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +++F   +RSGSFT AA++L+L+QS++S++I+ LE ++G  LF+R++R + LT QG 
Sbjct: 4   YESMQLFIHTSRSGSFTAAADELNLTQSAVSKKIAWLEKKLGFTLFHRNSRKIQLTTQGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +   ++   + +L+       G+LR++    +   +L   + +F+ ++P + +
Sbjct: 64  NYLSYCKQALDEMTYIESQLKGELNAVIGELRLSVPSAMATQILAKPISDFMAIHPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + ++++ +D+     D AIR+   +  S    R L       +A+P YLK+   P + +
Sbjct: 124 NISVNDRQVDLIESKVDIAIRV-ATLPDSGYKARFLFNNQSIMFASPSYLKDKGTPKTAE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  + +    P  +  ++   + +  +       ++ +S   +++  ++G GI+ L
Sbjct: 183 ELTTHQCLVYSLKAPSNI--WSLTDSNNTTVKVKVKERVKSDSAEMLLKMSLMGHGISAL 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+++VK   DN  L  I+ D  + S  +Y  +        +++AF NF+
Sbjct: 241 PNWMVKQHIDNGRLTAILVDYQSMSLPMYAVFKADGYQPYRIQAFVNFL 289


>gi|28870352|ref|NP_792971.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853599|gb|AAO56666.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 303

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 139/300 (46%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + +F  V RSGSF  AA QL +  +++SR+I  LE ++G +L  R  R L LT
Sbjct: 1   MITDLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRIQHLEVQLGTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +   +     L +   +L     +PSG++RIA   D         + +FL  YP
Sbjct: 61  QTGEHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+        A+P YL     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P S++ L  H+ ++     P     +  L   D  I + ++S     N+  ++ +  + G
Sbjct: 180 PDSLESLQAHDCVSAA--YPGGSTTWRMLGP-DAKIHDVQLSSRFNANTAQALRKATLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIALLP  +++    N  LV ++      S  ++  YP   +    + AF   +  K R
Sbjct: 237 LGIALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLR 296


>gi|170697720|ref|ZP_02888807.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137335|gb|EDT05576.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 349

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+    V   N+   + Q+ +LG G+A+
Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|115353237|ref|YP_775076.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|172062109|ref|YP_001809761.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115283225|gb|ABI88742.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
 gi|171994626|gb|ACB65545.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 349

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+    V   N+   + Q+ +LG G+A+
Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|107024063|ref|YP_622390.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691149|ref|YP_836772.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170734480|ref|YP_001766427.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105894252|gb|ABF77417.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649238|gb|ABK09879.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169817722|gb|ACA92305.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 349

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+    V   N+   + Q+ +LG G+A+
Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|161526297|ref|YP_001581309.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348989|ref|YP_001944617.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160343726|gb|ABX16812.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189333011|dbj|BAG42081.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 349

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G    
Sbjct: 7   MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L 
Sbjct: 67  ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTEQFPKVVPDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L 
Sbjct: 127 LVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALL 244
           +H  ++         E +        P GE R+    V   N+   + Q+ +LG G+A+L
Sbjct: 187 EHPSLSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 241 PSYLIGGDIARGALVRLLPDFKLPQVEINIAYPSRRHLPAKVRTF 285


>gi|311280828|ref|YP_003943059.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308750023|gb|ADO49775.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 300

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 144/298 (48%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++ +F  V  SGSF+ AAEQL  + S++SR +  LE+++G+ L  R  R L+LT
Sbjct: 1   MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + EL E+   P G LR+     +  + L   ++ F   YP
Sbjct: 61  EEGERYFRRMQGVLQEMAAAENELMETRNTPRGLLRVDAATPVMLHFLMPLVRPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P YL     P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKVIASPDYLAMHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            +  +L  H  + F +  P  +    W LA  D  + E  + C L  NS  ++ Q C+ G
Sbjct: 180 QTADDLSAHLCLGFTE--PVSLN--TWPLARYDGQLLE--VECGLTSNSGETLKQLCLNG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L DY+V    ++   V I+ D   P    F+  +    A+    +++AF +F+
Sbjct: 234 NGIACLSDYMVDKEIESGEFVEILADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|317050029|ref|YP_004117677.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951646|gb|ADU71121.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 299

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 130/270 (48%), Gaps = 5/270 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GSFT AAE L L + S+SRQ+  LE ++G +L +R  R + LT+ G   +
Sbjct: 7   MQVFVRVAEMGSFTRAAESLGLPKGSVSRQLQALENQMGTRLLHRTTRRVHLTQDGLVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+      Q      SGKLR+  ++ +    +   L EFL  YP I+I+L 
Sbjct: 67  DRCLDLLSMLDDMDSLFQHDPATLSGKLRVDMSVAMATGFILPRLPEFLQHYPGIEIELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC IR+ + ++ S LI RK+ T  +   A+P YL     P+ +++L 
Sbjct: 127 SSDRQVDVIREGFDCVIRVGE-LKDSGLIARKIGTHALINCASPDYLSRFGRPVRLEDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H ++ +   + +    F +         +     + VNS  +    C+ G GI  +P  
Sbjct: 186 QHAMVHYTQQLGQPSSGFEYFDGKQTHYIQTG-GVVTVNSTETYRAACIAGLGIIQVPAI 244

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            V+   ++  LV ++         +   YP
Sbjct: 245 GVQPLLESGQLVEVLHHFPAKPMPISLLYP 274


>gi|330445750|ref|ZP_08309402.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489941|dbj|GAA03899.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 300

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 140/285 (49%), Gaps = 8/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  ++++S +S++IS LETE+G++L YR  R LTLTE G  
Sbjct: 5   DDLVLFTQVIEHGSFSKVAELNNVTKSVVSKRISKLETELGLQLIYRTTRKLTLTEPGEV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     + H  +     +   S   SGK+R++     G+ +L   + +F   +P + ++
Sbjct: 65  LYHRAKSISHVAQAAFDSVTGYSEALSGKIRMSVPTISGELVLANAVADFCQRHPGLSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN  +D+  D  D  IR    ++ SSLI R +        A+P Y+++  +P   ++
Sbjct: 125 MSLDNHFVDLVADNYDLVIRTGY-LEDSSLIARHIFNSRWVICASPAYIEHYGKPEKPKD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +    P+    F+W       +   ++S     ++  ++ +  + G+GIA L
Sbjct: 184 LLSHNCLGYN---PQSTGPFDWQFLKQNKVYTQKVSGNFSSDNAAALKKVVLAGNGIAYL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P+ ++ D      LV ++         +Y  YP   K   +++A 
Sbjct: 241 PNCLIYDELQRGELVELLPTHAGKVVGIYAVYPYTRKPAKRIQAL 285


>gi|325272410|ref|ZP_08138802.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324102451|gb|EGB99905.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 301

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 152/302 (50%), Gaps = 11/302 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  V   GSF+ AA Q  +S + +SRQ+  LE  +G +L  R  R L LTE G+
Sbjct: 4   FSAMQSFRRVVDLGSFSAAASQAGVSHTVLSRQVKQLERHLGAQLLTRTTRRLHLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++  +++   +EL E   +P+G LR+      G+  L   L +F+  +P +QI
Sbjct: 64  LFYRHCVQILEQMQAMSLELSEHQQQPTGTLRLGVATAFGELELGRWLPDFVERHPLLQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +D+     D  +R+   + +SSL+ R+L    +   AAP YL+    P +  
Sbjct: 124 ELHCSDRFVDLLEAEIDVCLRVTDQLPNSSLVARRLTGSEVLLVAAPGYLQRHGTPATPD 183

Query: 185 ELDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H L+ +  L  P+ ++  N      R I  PR   L  NS +++    +   GIA 
Sbjct: 184 ELTGHPLLGYSQLPHPQRLQLTNNQGE-QRDILMPR--RLSANSPMALRAAAIGALGIAS 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
              +IV D   N  LV ++E    P+ T+Y  YP++     K++A  +++   + +AR W
Sbjct: 241 FDRFIVHDALQNGRLVPVLEGWKLPARTLYAVYPQSRYLPPKVRALLDYVQAYYSQAR-W 299

Query: 298 KF 299
           ++
Sbjct: 300 EY 301


>gi|170733405|ref|YP_001765352.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169816647|gb|ACA91230.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 301

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ EL
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R++  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWSFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + V D+     LV +++    P   ++  +P+
Sbjct: 242 WWEVGDDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274


>gi|167834974|ref|ZP_02461857.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 351

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 136/286 (47%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P+  ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPMHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|213969828|ref|ZP_03397962.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|213925376|gb|EEB58937.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 354

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 9/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V RSGSF  AA QL +  +++SR+I  LE ++G +L  R  R L LT+ G
Sbjct: 55  DLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRIQHLEVQLGTRLLQRSTRKLVLTQTG 114

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   +     L +   +L     +PSG++RIA   D         + +FL  YP +Q
Sbjct: 115 EHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYPRVQ 174

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLS 182
           ++ +L ++  D+  D  D A R   P+Q S  + R+L+        A+P YL     P S
Sbjct: 175 LEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATHGMPDS 233

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           ++ L  H+ ++     P     +  L   D  I + ++S     N+  ++ +  + G GI
Sbjct: 234 LESLQAHDCVSAA--YPGGSTTWRMLGP-DAKIHDVQLSSRFNANTAQALRKATLAGLGI 290

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ALLP  +++    N  LV ++      S  ++  YP   +    + AF   +  K R
Sbjct: 291 ALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLR 347


>gi|148975143|ref|ZP_01812067.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965067|gb|EDK30317.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 301

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++AR G+FT AAE+L +S+S +SRQ+S LE ++G+ LF R  R L LT  G  L+
Sbjct: 10  IRSFVLIARLGNFTKAAEELDVSRSHVSRQVSSLEKQMGVTLFIRTTRTLRLTHAGQDLY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++   I   +   +  G +++      LG+ ++   + EF+ LYPDI I L
Sbjct: 70  TKCEQALDNIDQALIAAVDDVEEVRGDIKVNCVGGYLGEVIIADLVNEFMQLYPDISISL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+   ++ +  I RKL+ I M   A+P Y     +P   ++L
Sbjct: 130 DFSSNRVDLIEDAFDIAFRM-GSLEDAGFIARKLLDIEMGTLASPEYFVRKGKPNHPKDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +T    + K +  F  L    + +       LQ  +   ++Q    G+GI  +P 
Sbjct: 189 IHHDCLTGS--VRKWI--FQALDDTKKTVDVHVTGRLQCKNGRVLVQGAKSGNGIIRVPT 244

Query: 247 -YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y +++  +  LV++ +D + P       Y        +++ F +F+
Sbjct: 245 IYCLQELNDGQLVQVFDDWVVPKVDFSAIYHRDRYQPSRIRTFIDFV 291


>gi|160898474|ref|YP_001564056.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364058|gb|ABX35671.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 305

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 147/292 (50%), Gaps = 23/292 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S+I + ++ LE  +G++LF+R  R +TLT +G+     
Sbjct: 17  VFVQVAETRSFVAAGRLLGISASAIGKSVARLEDRLGVRLFHRSTRSITLTAEGTLFLER 76

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  Q+EL ++S  P G+LR+  ++ L  +L+   L EF+  YP+I++ L   
Sbjct: 77  SRRILAEIEAAQLELSQASTAPRGRLRV--SLPLVSSLVLPVLGEFMRAYPEIELDLDFT 134

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  D  D  +R   P   S L  R+L        A+P YL     P   ++L +H
Sbjct: 135 DQLVDVIEDGFDAVVRTGAP-ADSRLSARRLGAFGYLLVASPGYLAQRGTPRVPEDLLQH 193

Query: 190 NLITF-----GDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           + + +     G L P       W+  + R  G P +   + +  N+  + + + + G GI
Sbjct: 194 SCLHYRYPHSGKLEP-------WV--LRRAAGAPELQLPTSMICNNIETRLCFALQGLGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP++ +++   +  L  ++ D +  +   +  +P +   + KL+A  +F+
Sbjct: 245 AYLPEFSIREPLADGRLQPVLADCMEHTNVFHVLWPASKHPSPKLRALVDFL 296


>gi|239815506|ref|YP_002944416.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802083|gb|ACS19150.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 320

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 138/292 (47%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  V  SGS + AA++L LS+  ++R ++ LE   G +L +R  R L+LT  G +
Sbjct: 5   NAMRVFVTVVDSGSLSAAADKLDLSRPVVTRYVAELEQWTGARLLHRTTRRLSLTAAGEE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +V       Q  +++ +  P G+LRI  +    Q  L   + +++ L+P + + 
Sbjct: 65  LLPRCRQVLELAGDMQEAVRQPAEAPRGQLRITASTSFAQAQLADAVADYVRLHPGVAVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++ +++  +  D AIR+   I   +LI R+L        A+P YLK   +PL ++E
Sbjct: 125 LVLLDRAVNLVDERIDLAIRVAVEID-PNLIARRLTDCRSVVCASPGYLKEHGQPLRVEE 183

Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L + N +T   FG  +      +N+    D  P+       +  N   S+M     G+GI
Sbjct: 184 LAQRNCLTHSYFGRSL------WNFTRREDGTPVSVAVGGNVSTNDAASLMHLARAGAGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP Y+         LVR+  +       +Y  Y         L+   +F+
Sbjct: 238 AMLPTYLTAGLLQAGELVRLFPEFEPQVVGMYAVYASRKHMPATLRTMLDFL 289


>gi|254251077|ref|ZP_04944395.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124893686|gb|EAY67566.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 349

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+    V   N+   + Q+ +LG G+A+
Sbjct: 186 AEHPALSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|284919978|emb|CBG33033.1| LysR-family transcriptional regulator [Escherichia coli 042]
          Length = 304

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 143/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G L I     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLHIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    + 
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPLFNSYRKIIASPDYISRYGKS 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L +H  + F +  P  +    W +A  D  + E +   L  NS  ++ Q C+ G+
Sbjct: 180 ETLDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVKYG-LSSNSGETLKQLCLSGN 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY++        LV +M D + P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|254501667|ref|ZP_05113818.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222437738|gb|EEE44417.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 304

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 130/284 (45%), Gaps = 6/284 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW++ R F V A  GS + AA  L+L+Q ++SRQ++ LE  +G+ LF R ++ L LT
Sbjct: 6   ITFDWNQARAFLVTAEEGSLSAAARALNLTQPTLSRQVAALEETLGVTLFERVSKSLVLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L      +        +     S +  G + I+TT  LG  LL   L+      P
Sbjct: 66  EAGVELAEHVRAMGEAASRVSLAASGQSQQIEGMVTISTTDILGIYLLPEILRNLRRKAP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I++   N   D+    AD AIR  +P     L  RKL       Y A  YL    + 
Sbjct: 126 GIEIRIRCTNSLSDLRRREADIAIRHVEP-DHPDLYARKLYDASAKVYGARSYLSRFGDS 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LS+++   H+ I F D  P+ +     L  +  P+ E  I  L   S     +Y   G G
Sbjct: 185 LSMKDAGAHDFIGFDD-NPQLV---GHLRAMGLPVTEANIK-LSSPSGAVAWEYVRRGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           + ++ D I    P LV   +D+    F V+      L  + +++
Sbjct: 240 LGIMADEIAACCPELVPAFDDLTEVYFPVWLVTHRELHTSRRIR 283


>gi|206561140|ref|YP_002231905.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198037182|emb|CAR53103.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 294

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 11/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S+I ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              V  +++  + EL +S   P G+LR++  TI     LL   L +F+  YP+I++ +  
Sbjct: 69  CRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIG---TLLLPVLADFMAAYPEIELDIDF 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  +  D  +R   P   S L  R L     H  A+P YL+    P +  +L +
Sbjct: 126 SDRIVDVIDEGFDVVLRTGHPTD-SRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLAQ 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  + +    P   +   W     R    P +    V N+  + + + + G GIA LP++
Sbjct: 185 HRCLHY--RFPSSGKLEIWPLRAPRAGTPPEVPVSMVSNNAETRLCFALRGLGIACLPEF 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+D   +  L  +++D +      Y  +P       KL+AF +++
Sbjct: 243 FVRDTLADGRLRAVLDDHVASRTPFYVLWPSGRHPLPKLRAFVDYM 288


>gi|271500266|ref|YP_003333291.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343821|gb|ACZ76586.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 305

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 17/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA +GSF HAA+ L L  S+++  I  LE  + ++L  R  R + LT +G++  
Sbjct: 7   MQIFIRVAEAGSFIHAAQTLSLPASTVTSTIKNLEKHLQVRLLNRTTRRVNLTPEGAQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +  T+  L ++  +P G+LR+     +   ++  NLK+F   YPDI + + 
Sbjct: 67  ASCREILALIAHTESSLTDAIQRPQGRLRVDMPAGIAHAVITPNLKDFRRRYPDIYLMIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR    +  S+LI R L  +     A+P YL     PL+  +L 
Sbjct: 127 VSDRQVDLIQEGVDCVIRTGD-LSDSTLIARPLGKLTWVTCASPAYLHAKGTPLTPDDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSGI 241
            H  I +     +   +  ++   +  I       +QVN  +++      +Q C+ G G+
Sbjct: 186 HHQAIHYFSGNARRANEMRFVRGHESKI-------VQVNGVMAVNETGLYIQMCLDGYGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L   +V     +  L+ ++ED       V   YP     +  L+AF +++
Sbjct: 239 AQLAKSVVSRYLQDKRLIEVLEDWRPADVPVTLLYPHHRFVSPALRAFTDWV 290


>gi|204927662|ref|ZP_03218863.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323004|gb|EDZ08200.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 302

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 13/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + ++  V   GSF  AAE L L + +++R +  LE ++G+KL +R  R +++T++G +
Sbjct: 7   EAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSMTDEGEE 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  +L+  +  L  S+  P G+LR+   I L + ++   L +F   YPDI+I 
Sbjct: 67  FYQRCLSLLSELDDVR-RLFSSTQPPKGRLRLDVPITLTRAVIIPALGDFQNRYPDIEIV 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DC IRL + +  SS + R+L T  M   AAP YL     P SI E
Sbjct: 126 LGSSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGTPHSIDE 184

Query: 186 L-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI-- 241
           L   H  + F       ++   W  TVD  I   ++ S + V++  + +   + G GI  
Sbjct: 185 LMTSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLAGLGILH 242

Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P    +I      L  I+ D   P   V   YP+      K++ F +++
Sbjct: 243 GLRPSLAPFIASG--ELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWL 292


>gi|167579261|ref|ZP_02372135.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 305

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V R  SF+ AAEQL +S + +S++++ LE  +G +L +R  R + +TE G +
Sbjct: 8   DDLRVFSAVVRLASFSAAAEQLAVSPAYVSKRVALLEKRLGTRLLHRSTRRVAVTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LRI+++   G+++L   L +F   YP + ++
Sbjct: 68  VFAWAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFSERYPQLDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  IR+   I +  LI ++L T +    A+P YL  C  P  + +
Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADRLIAKRLATNYRVLCASPGYLARCGTPRQLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L  H  +     I +    F  W  TV       ++   L  N     +Q+ + G GI L
Sbjct: 187 LAAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               I +  P      L R++ D + P+  V+  YP  L  + K++   +F+
Sbjct: 243 --RSIWEAGPLLASGKLERVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 291


>gi|89095356|ref|ZP_01168272.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
 gi|89080361|gb|EAR59617.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
          Length = 298

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 134/287 (46%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V    SF+ A+  L+L  S++SRQ++ LE      L YR  R + LT +G    
Sbjct: 11  MRTFLEVVEHMSFSEASRALNLVVSAVSRQVADLEKHFDCTLLYRTTRSMKLTPEGEFYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V  +LE  +    E + K  GKLRI    ++ Q  LQ  L  F+  YPD+ I  +
Sbjct: 71  EKFRQVIEQLEALESSKSERTNKIQGKLRITAPFNIDQLGLQHQLAAFMRQYPDVSISWV 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +++  +  D A+R+   ++ S  I RK   + +   A+P YLK   EP   ++L 
Sbjct: 131 LVNRYVNLIEEGFDLAVRV-GDLEDSGFIARKYGLLEVDFVASPDYLKTHGEPKHPKDLS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +   D   +    F+++    +     +   L VN    +  +   G GIA LPD+
Sbjct: 190 EHQCLI--DSSIRQPGRFSYMENNKQHQVSVK-GALDVNQGRILADFAAAGLGIAQLPDF 246

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++K   D+  LV +++    P   +   YP A      L+A   F+ 
Sbjct: 247 LIKDYIDSGQLVPVLQAYKLPPRDISLVYPAAKLTNPTLRALIEFLL 293


>gi|293394798|ref|ZP_06639089.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422749|gb|EFE95987.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 295

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 140/287 (48%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA +GSF  AAE L L  S+++  + GLE  + ++L  R  R ++LT +G +  
Sbjct: 1   MQIFTRVAEAGSFVRAAETLSLPPSTVTSTLKGLEKYLQVRLLNRTTRRVSLTPEGLQYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   ++  +  L +S  +P G+LR+     +   ++  NLK+F   YPDI + + 
Sbjct: 61  AQCREILFLIDHAEASLTDSVKRPQGRLRVDMPGGIAHFIVMPNLKDFFRRYPDIYLMVG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D+  +  DC IR+ + + +S+L+ R L        A+P YL+    P S +EL 
Sbjct: 121 VNDRQVDLIQEGVDCVIRVGE-LNNSTLVARPLGRFRWVTCASPDYLREYGIPQSPEELS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I +     K   +  +    + R I  P      VN     ++ C+ G G+  L +
Sbjct: 180 RHRAIHYFSGQAKRANEMRFARGAETRSI--PMNGGTAVNETGLYIKMCLDGFGLVQLAE 237

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +V +      L+ ++ D   PS  V   YP     +  ++ F +++
Sbjct: 238 SVVSEYLQAGKLIEVLADWQPPSIPVNLLYPHQRFLSPAVRVFADWV 284


>gi|241764319|ref|ZP_04762348.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241366333|gb|EER60870.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 297

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 132/286 (46%), Gaps = 5/286 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  SFT AA QL +SQS++S  I   ET++G++L  R  R ++ T+ G
Sbjct: 5   NYNDLTAFITVARERSFTRAASQLGVSQSALSHSIRAFETKLGVRLLTRTTRSVSPTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +    ++E     ++E   KP+G +R+ T     + +L   L+  L  +PD +
Sbjct: 65  ERLLRSVAPQLDEIEAEVATIRELQDKPAGLVRVTTAEHAAETILWPKLEHVLPAHPDFR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    DI  D  D  IRL   +       R    I M    +P Y +    P S 
Sbjct: 125 VEVCIDYGLTDIVADRFDAGIRLGHQVAKGMTAVRISPDISMAVVGSPSYFERHARPRSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L +HN I      P     + W    D      R+   L +N+   I+   + G G+ 
Sbjct: 185 HDLTQHNCINL--RFPTSGGLYAWELEKDGSKLNVRVDGQLVLNNLSQILGATLAGLGLC 242

Query: 243 LLPDYIVKDNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAF 286
            +P+ I + +    R+ + + T  P F  Y  Y  + +++ +  +F
Sbjct: 243 FIPEDIARPHIETGRLKQVLKTWCPKFPGYHLYYPSRRHSSRALSF 288


>gi|24372292|ref|NP_716334.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24346225|gb|AAN53779.1|AE015516_1 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 329

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 139/289 (48%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  GS 
Sbjct: 4   EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  +L+ T  E+     +  G LRI        N+L   +  F+ L+P + ++
Sbjct: 64  FYQRSQNILAQLDETLFEMTNDDAEIRGHLRIQMFPIHSMNVLMQAIFRFMDLHPKLTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I   + +D+  +  D A  +   + +  L+ R + T  +  YA+P YL     P + +E
Sbjct: 124 VISSAESVDMVKNNLDVAFVVEPALDTLDLVVRPIFTTDLCFYASPTYLAKYGTPNTTKE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           ++ HN+  F     K   +  W+        E R+      NS    +++ + G GI   
Sbjct: 184 IESHNVSLFRLSNGKIFNEL-WIGAEQ----EVRVRGNFCSNSVEVAVEFALQGRGIVYA 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V D   +  L+ ++ D+       Y  YP     +   + F +FI
Sbjct: 239 PAEVVADLVASGQLITLLPDIPPHPGECYLAYPSRRYVSLASRRFIDFI 287


>gi|327192685|gb|EGE59623.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 304

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 139/281 (49%), Gaps = 16/281 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E+G++L  R  R L+ T+ 
Sbjct: 2   LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSATDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +S+    +E   + L E+  +P+G +RI+  +  G + LQ  + + L  YP  
Sbjct: 62  GRLYYEESSQALRTIEGANLRLAEARAEPAGTIRISAPVGFGGHFLQDAIFDLLATYPKS 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++  +  D A R    ++ S+LI RKL + H    A+P YL     P  
Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLARRGAPDR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
             +L +H+ +  G           WL  ++ P G+  I        N   ++M   + G 
Sbjct: 181 PADLVRHDCVVAGQ-----STHAQWL--LEGPHGQETIPVSGRFAANEMQAVMAAAIAGY 233

Query: 240 GIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEA 276
           GIA LP  +    ++D   L R+++   TP   ++  YP +
Sbjct: 234 GIARLPHGVANAYIRDG-RLCRVLDGYTTPVGGLHVVYPSS 273


>gi|239816923|ref|YP_002945833.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239803500|gb|ACS20567.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 300

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 139/288 (48%), Gaps = 10/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GSF+ AA + H +Q ++++Q++  E  + ++L  R+ RG++LTE G+  +
Sbjct: 7   MEMFVRVVETGSFSKAALEFHTTQPTVTKQVAATEARLKVRLLNRNTRGVSLTEPGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + E  +  ++    +  G LRI T++  G+ ++     E++  +P +Q+ L 
Sbjct: 67  EKCKNIVREAEEAESIVRLRQNQAQGLLRIGTSVAFGRRVVVPLALEYMRRHPQVQLDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+     D AIR+ K +  SSL  R L T      AAP YLK    P   Q+L 
Sbjct: 127 FEDRYVDLIAQGIDVAIRMGK-LADSSLGARYLGTNPWAMVAAPGYLKKHGTPKRAQDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  + +  ++     D  W     +  P+  P     + N+  +++     G GIAL+P
Sbjct: 186 AHVALIYSSVV----GDEFWRMHTPKGDPVTVPVSGRFRSNNLSAVLAAARDGLGIALMP 241

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y+  +   +  ++ ++ D   P   ++  +P      GK+  F  F+
Sbjct: 242 RYVASESLASGKVLEVLGDHKLPEQEIHAVFPSPKLVPGKVSGFVAFL 289


>gi|197122067|ref|YP_002134018.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171916|gb|ACG72889.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 301

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 11/250 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++ VF  V  +GSFT AA  L L +SS+SR ++ LE ++GI+L  R  R L+LT+ 
Sbjct: 1   MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEADLGIRLLQRTTRRLSLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  T +    L     E      +P G +R+   +DL  +L +     FL  +P +
Sbjct: 61  GRAYYERTRDALAGLREASEEAAALGAEPRGTVRVTAPVDLAPDLAR-LTDAFLRAHPQV 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L  + +D+  +  D AIR    +  SSL+ RKL    +  +AAP YL     P  
Sbjct: 120 RVEVSLTARYVDLVKEGFDLAIRA-GVLADSSLLARKLSDSALALFAAPSYLDARGRPRR 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
           + +L +H+ +    L     E   W  T  R  GE +++       + +  +    + G+
Sbjct: 179 LADLARHDCL----LYRAGAETAVWRLTGRR--GEEQVTVHGRAAADEFAFVRGMLLAGA 232

Query: 240 GIALLPDYIV 249
           GIAL+P  +V
Sbjct: 233 GIALVPTGMV 242


>gi|115376665|ref|ZP_01463894.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366346|gb|EAU65352.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 267

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 133/266 (50%), Gaps = 10/266 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           + +S++SR++S LE  VG +L  R  R L LTE G   +   + +  + E  ++ +    
Sbjct: 1   MPKSTVSRKVSELEERVGAQLLQRTTRKLRLTEVGQAYYEHCARIVAEAEQAELAVTRMQ 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             P G LR+  T  L  N +   L  FL  YP++QI+++  ++ +D+  +  D A+R  +
Sbjct: 61  SAPHGLLRV--TAPLAFNFMGSILAAFLTRYPEVQIEMVCTDRTVDLVEEGFDLAVRAGR 118

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNW- 207
              SSSLI R+L +I     A+P Y++    P S +EL  H+ + FG      +    W 
Sbjct: 119 LPDSSSLIARRLGSIERGVMASPRYIQERGAPKSPKELAAHDCLLFGVGTGGNV----WS 174

Query: 208 LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVIT 264
           L + +R       + L VN    +    + G GIALLP+ +  ++     + RI+ +  +
Sbjct: 175 LVSGNRSAEVSIRARLTVNEPDMLRAVTLAGFGIALLPNSLYAEDIATGRMQRILPEWSS 234

Query: 265 PSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V+  YP    ++ K+ AF +F+
Sbjct: 235 PGASVHALYPVTRHHSPKVMAFVDFL 260


>gi|323530261|ref|YP_004232413.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323387263|gb|ADX59353.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 320

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 135/292 (46%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F   A  GSFT AA    ++ +++SR ++ LE  +G +LF R  R + LT+ G +  
Sbjct: 13  IELFCFAAELGSFTLAANAASVTPAAVSRSVARLEERLGARLFVRTTRQIRLTDAGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E   +L   + E+      P+G +RI+     G   +   L  F   YP + ++  
Sbjct: 73  EQCREALSQLADAEREVTGEQTTPAGVVRISMPTPYGHYRVLPLLPAFRERYPHVYVETH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID + +  D AIR R P   SSL+ RKL    M   AAP YLK    P ++ +L 
Sbjct: 133 LSNRNIDFADEGFDLAIRGRAPAD-SSLVARKLEDAEMVVVAAPGYLKRAGVPETVADLQ 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY------LSIMQYCVLGSGI 241
            H  I F   +P       W  T+  P+ +  +  L   SY      L+ +     G+G+
Sbjct: 192 THECIQFD--LPSSGRRLAW--TLQDPLDDGDV--LTSGSYATSGDALAGVTLARAGAGL 245

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                ++V+D+     LV ++ +    +      YP A   T +++AF +F+
Sbjct: 246 FQTYRFVVQDDLREGRLVEVLREAGGRTRPFILLYPHARYLTSRVRAFVDFL 297


>gi|152977767|ref|YP_001343396.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150839490|gb|ABR73461.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 296

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 10/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  +GSFT AA +L +S+  ISR ++ +E  +  +L  R  R ++LTE G +  
Sbjct: 7   IQVFLAVTETGSFTQAAARLDISKPMISRYVNLMEDWLNARLLQRTTRKVSLTEAGEQAV 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++ +  +  + EL   S +  G LR+  +   G   L   +  F++ +P + IQL+
Sbjct: 67  VFCRQIINLQQEMEQELAAQSGELRGGLRLTASNAFGSAHLVQAINAFMMCHPKLNIQLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  I++  +  D A+R+       +L+ RKL   H    A P YL    EP +  +L 
Sbjct: 127 LSDTPINLVEERIDLAVRITNS-PDPNLVARKLAACHSVLAATPAYLAQAGEPATPDQLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   ++  K  +         R I     S    N  L+++       GIA+LP Y
Sbjct: 186 NHRYLAHANINRKSWK----FKQNGREIQIELTSRFATNDTLALLHAVQGHGGIAMLPRY 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDW 297
           ++ +   N  L  ++ D   P F +Y  YP   K    +++  +F+  +   +DW
Sbjct: 242 LISEQLKNGTLKPVLTDWQLPEFDIYALYPSRHKLPLAVRSLIDFLAQWFAVKDW 296


>gi|257485191|ref|ZP_05639232.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331010904|gb|EGH90960.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 303

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 137/304 (45%), Gaps = 9/304 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L  R  R L LT
Sbjct: 1   MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H         L     +L     +P G+LRIA   D         + +FL  YP
Sbjct: 61  QAGEDFHERCVGAVDGLMDAAEQLVSHREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDSMVASPAYIAAHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P S+Q L  H  ++     P     +  L   D  + E +++     N+  ++ +  + G
Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K R
Sbjct: 237 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 296

Query: 296 DWKF 299
           D  F
Sbjct: 297 DKAF 300


>gi|251791329|ref|YP_003006050.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247539950|gb|ACT08571.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 298

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 5/252 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++++ F  V   GS T AA QL  + S ISR +  LE+++G+ L +R  R L L+
Sbjct: 1   MKVTLEEMQAFVAVVDGGSVTAAAGQLGQTASGISRALGRLESKLGMTLLHRTTRRLALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   +V  K+E  + ++     KPSG+LRI  T  L Q+ +   + EF   YP
Sbjct: 61  EEGQIFLQHARDVLQKVELAEEQIALRRRKPSGRLRINATASLMQHFIVPLIPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D++ ID+     D AIR+ + ++ SS+  R L    +   A+P YL     P
Sbjct: 121 CISLELNTDDEIIDLLEQRTDIAIRIGE-LRDSSIHARPLGATRLWILASPEYLNRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LS++ L  H L+ F       +         D PI    +  +  ++   + Q    G G
Sbjct: 180 LSVEALSGHTLLGFTQSASLNLWPLRSALGDDYPI----VPTIAASNGEILRQLAQRGEG 235

Query: 241 IALLPDYIVKDN 252
           I  L D++ +D+
Sbjct: 236 IVCLSDFMTRDD 247


>gi|240947924|ref|ZP_04752358.1| LysR family transcriptional regulator [Actinobacillus minor NM305]
 gi|240297787|gb|EER48234.1| LysR family transcriptional regulator [Actinobacillus minor NM305]
          Length = 296

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 137/282 (48%), Gaps = 32/282 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           ++VF  VA +GSFT  AEQL +S+  ISR ++ +E  +  +LF R  R + LT+ G    
Sbjct: 7   IKVFLTVAETGSFTATAEQLEISKPMISRYVALMEEWLNARLFQRSTRKVALTDAGEQAV 66

Query: 65  ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               ++  +T+E+  ++   Q EL+       G LR+ ++   G   L   +  FL L+P
Sbjct: 67  LFCQRIANLTAEMEQEMMVQQSELR-------GALRVTSSQTFGTYHLVQMVNRFLQLHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQL+L+++ +D+  +  D AIR+       + I RKL   H    A P YL     P
Sbjct: 120 KLNIQLLLNDQQMDLISERIDLAIRITN-TPDPNFIARKLADCHSLLVATPDYLAKFGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYC 235
              +EL +H+ ++  ++  K      W  T     GE  +     S    N   +++   
Sbjct: 179 TQPEELYQHHYLSHHNINRKA-----WKCTQ----GEQEVLLDLNSRFTTNDTQALLNSV 229

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           +  +GIA+LP Y+++       L  ++ D   P+F++Y  YP
Sbjct: 230 LDSNGIAMLPKYMLETELQQGKLQAVLSDWQLPAFSIYAMYP 271


>gi|221201853|ref|ZP_03574890.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221207641|ref|ZP_03580649.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221214663|ref|ZP_03587633.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221165553|gb|EED98029.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221172487|gb|EEE04926.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221178273|gb|EEE10683.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 349

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G    
Sbjct: 7   MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L 
Sbjct: 67  ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTEQFPKVVPDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L 
Sbjct: 127 LVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALL 244
           +H  ++         E +        P GE R+    V   N+   + Q+ +LG G+A+L
Sbjct: 187 EHPSLSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 241 PSYLIGGDIARGALVRLLPDFKLPQVEINIAYPSRRHLPAKVRTF 285


>gi|325121624|gb|ADY81147.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 299

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 145/298 (48%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA +GSF HAAE L L  S+++  +  LE  + ++L  R  R ++LT +G++  
Sbjct: 9   MQIFVRVAEAGSFIHAAEALSLPASTVTSTVKNLEKYLQVRLLNRTTRRVSLTPEGAEYL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E T+  L  +  +P G+LR+     +  +++  NL+EF   YPDI + + 
Sbjct: 69  IQCREIIDLIEHTESNLTNAIKQPQGRLRVDMPAGIAHSVIMPNLQEFQQRYPDIYLMIG 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR+   +++S+L+ R L        A+  YLK    P +  +L+
Sbjct: 129 VSDRQVDLIKEGVDCVIRMGN-LENSTLVARPLGEFRWVTCASAAYLKENGFPQTPNDLE 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQYC 235
            H  I             ++ +   R  GE R         +Q+N  +++      ++ C
Sbjct: 188 HHRAI-------------HYFSGSHRHAGEMRFVRNEEKKTVQMNGTVAVNETELYIKMC 234

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G G+A L + +V D+     L+ +++D   P   V   YP     +  ++ F ++I
Sbjct: 235 LEGYGLAQLAERLVIDHLKEKRLIAVLQDWCPPPVAVTLLYPHQRFLSPAVRVFSDWI 292


>gi|260778886|ref|ZP_05887778.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605050|gb|EEX31345.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 302

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 152/304 (50%), Gaps = 28/304 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V   GSFTHAA+ L++++S++SR++  LE  +G++L  R  R L LT +
Sbjct: 1   MDLNAIAVFAQVVDCGSFTHAADALNMTKSTVSRKLVELEKHLGVRLITRSTRSLVLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++ + ++   +   ++E+  +     G L +   ++LG  ++   +  FL  YP +
Sbjct: 61  GERFYQSSLQMLEIMNQAELEVSANQDLIRGPLNVVLPVELGHQIMGSYINAFLKEYPSV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L N+++DI  +  D   ++ + ++ S+L+ R L        A+P Y         
Sbjct: 121 TINLELSNREVDIIAEGIDLYAQIGE-LEDSALVSRPLTKSQRVLVASPEY--------- 170

Query: 183 IQELDKHNLI-TFGDLIP--KCMEDFNWLATVDR--PIGEPRISC-------LQVNSYLS 230
              L++H  I +  DLIP  + +E FN    + +   I E   S        L+VN+  +
Sbjct: 171 ---LEEHGGIESHRDLIPPHQMVEVFNRAVRLPKWHLIPEDGDSLQIDLPHRLRVNTITA 227

Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            ++ C+ G GIA+LP++I ++   +  L++++ +   P   V   Y +      + K F 
Sbjct: 228 CLKACLDGLGIAVLPEFICREHFASGRLIQLLPEYQMPEVLVSLVYADRQLMPKRKKVFI 287

Query: 288 NFIF 291
           +F+ 
Sbjct: 288 DFLL 291


>gi|258626793|ref|ZP_05721601.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258580933|gb|EEW05874.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
          Length = 300

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P+++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPEVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S I RKL  + M   A P YLK C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFIARKLTEVAMSTLATPAYLKQCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 AEHRCLT-GSVKRWSYQHNTTQQTIDVPVD----GDLQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  ++      LV +  D   PS      Y +      +LK F  F
Sbjct: 245 FYCQEEIARGELVEVFPDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|212633465|ref|YP_002309990.1| helix-turn-helix domain-containing protein [Shewanella
           piezotolerans WP3]
 gi|212554949|gb|ACJ27403.1| Helix-turn-helix, Fis-type [Shewanella piezotolerans WP3]
          Length = 314

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 139/276 (50%), Gaps = 15/276 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F+ +  +GS   AA+ L+L +S++SR++  LE E+ +KLF+R +R +TLT  GS 
Sbjct: 4   EDITLFHRIVETGSLVEAADILNLPKSTLSRRLQLLEDELNVKLFHRQSRAMTLTASGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  T+ +  +LE T  EL   + + +G LRI          +   + EF+ L P + ++
Sbjct: 64  FYDKTTPMLAQLEQTMSELSGQNAEVAGHLRILIFPIPELIHITHAIFEFMDLNPGLTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+  +  D+  +  D A  L      + ++ R ++T  +H +A+P YL     PL+ + 
Sbjct: 124 IIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHMITEMVHFFASPEYLAKTDIPLTQEC 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241
           L +HN I F     K    FN     D P G+ R   ++    VNS  + ++  ++G GI
Sbjct: 184 LSEHNSILFRYPNGKI---FN-----DVPFGKDRTLAVKGNLCVNSLETCLEATLMGRGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           +++P    +   D+  L  + E++       Y  YP
Sbjct: 236 SMMPLAFAQEHVDSGKLKMLFEEIEPYEGKCYLVYP 271


>gi|114776626|ref|ZP_01451669.1| putative transcriptional regulator [Mariprofundus ferrooxydans
           PV-1]
 gi|114552712|gb|EAU55143.1| putative transcriptional regulator [Mariprofundus ferrooxydans
           PV-1]
          Length = 300

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 14/290 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  W+ +R F  VA +GS + AA  L LSQ ++SR I  LE+   + LF R ++GL LTE
Sbjct: 3   SIPWELIRSFLAVADAGSLSAAARSLELSQPTLSRNIQTLESHTRLNLFKRTSQGLNLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+ L     ++ +  ET   ++   S + +G++RI+    +G  LL   +  F   +P 
Sbjct: 63  EGTALVEAAQQMNNSAETFARQVSGLSTELNGEIRISANEIVGIYLLPAVIAAFRKQHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++++ N+  +++   AD A+R+  P Q   L+ R+L  + +  YA   YL     P 
Sbjct: 123 VHIEIVISNRASNLNKREADIALRMFHPKQ-PDLVARRLPDMPLGFYAHKSYLDQHGTPE 181

Query: 182 SIQELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           S  EL +H LI F    D I          +  D          L+ +S +  +Q  + G
Sbjct: 182 SFNELREHALIGFDQNRDFIDGARAMGFTFSNNDFE--------LRTDSLMLQIQLALQG 233

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVY-FCYPEALKNTGKLKAFR 287
            GI      + +  P + RI+E    P    +  C+ +   N  +++AF+
Sbjct: 234 CGIVGTHVGVARQWPEMKRILEWAPIPPLEFWVVCHADTQYN-ARIRAFK 282


>gi|226943206|ref|YP_002798279.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226718133|gb|ACO77304.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 311

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 134/296 (45%), Gaps = 23/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  SGSFT AA  L LS + +SR +S LE  +  +L +R  R L +TE G +  
Sbjct: 7   MRAFVRVVDSGSFTAAAASLQLSNAQVSRLVSDLEASLQARLLHRTTRRLAVTEAGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +++   +E   + + P G+LR+ +   LG   L   +  +  LYP++ + L 
Sbjct: 67  QRCRNILAEVQDAAVEASGAHLTPRGRLRVHSITSLGTLQLAPLVARYTALYPEVSLDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D+  +  D  I L + +  S L+ +++  +H    AAP YL+    P   Q+L 
Sbjct: 127 LSQRTPDLLEEGHDVVITLSRELPDSELVAQRVGDLHSVVCAAPQYLERHGTPKIPQDLH 186

Query: 188 KHNLITFGD-LIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +H  +   D L P     +D +   TV RP G       QVN   ++ Q    G G+ LL
Sbjct: 187 EHRCLRLVDPLFPDRWVFQDGDGELTV-RPGGH-----FQVNVAEAMAQAAAAGMGVCLL 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P ++         L R++        ++Y  YP            R+F+  K R W
Sbjct: 241 PSFVAAKALRQGTLKRLLPQYQLHQRSIYALYPS-----------RSFLDAKTRTW 285


>gi|154247221|ref|YP_001418179.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161306|gb|ABS68522.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 337

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 139/298 (46%), Gaps = 12/298 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F +   S SF+ AA +L LS + +S +I  LE  +G +LF R  R ++LTEQG  
Sbjct: 32  DNMKAFAMSVESESFSEAARRLRLSANVVSHRIQMLEKHLGCRLFNRTTRRMSLTEQGRV 91

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   ++    ++  +  + E    P G LR+   + LG+ L+      +   +P+I ++
Sbjct: 92  YYEAITDALRLIDAAESNVSELGALPRGALRVTAPLHLGRRLVAQVSARYQEAHPEIDVR 151

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L    +D+  +  D A+RL    + SS+I RK+  +     AAP YL+    PL  Q+
Sbjct: 152 LRLSEHTLDLIAESIDVALRL-ATFEDSSMIMRKVAQVERILCAAPAYLERAGVPLRPQD 210

Query: 186 LDKHN--LITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H   L+ F  L      +  W+ T + R +  P    L+ +    +  + + G GI 
Sbjct: 211 LLSHQCLLLRFASL-----RELRWMLTDEGRDLAVPVTGHLEADDGDVLTVWALEGRGIV 265

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           + P + V D      LV +++       T+   YP       K+KAF + +  + R +
Sbjct: 266 VKPRFEVADALAEGRLVPVLQAHPPKPATLAVLYPARQLVPLKVKAFADMLVDQGRRY 323


>gi|307255082|ref|ZP_07536900.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259519|ref|ZP_07541244.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306861955|gb|EFM93931.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866455|gb|EFM98318.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 297

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 145/303 (47%), Gaps = 25/303 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           ++VF +VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+ G    
Sbjct: 7   IQVFLMVAETGSFTATAERLVLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66

Query: 65  ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               K+  +TS +     T + EL+       G LRIA+    G   L   ++ FL  +P
Sbjct: 67  EYCKKMTELTSAIEQDFLTQRGELR-------GSLRIASNAAFGSTHLLNAIRTFLAKHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQLIL +  +++  +  D A+R       ++ + R L T H    A P YL      
Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNNPDPNA-VARPLFTCHSLLVATPAYLTQHGTI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S QEL  H  +   ++  K   ++ ++      + E   S L +N   +++ + +   G
Sbjct: 179 HSPQELANHRYLAHANVNRK---EWTFIKGGQETVLE-LTSQLTINDTGALLNFTLADGG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           IA+LP Y ++    N  L  ++ D   P++ VY  YP   + +  +++F +F+   F   
Sbjct: 235 IAMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLSQAVRSFVDFLVEEFEGK 294

Query: 295 RDW 297
           RDW
Sbjct: 295 RDW 297


>gi|289627430|ref|ZP_06460384.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646129|ref|ZP_06477472.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866700|gb|EGH01409.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 303

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 9/304 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L +R  R L LT
Sbjct: 1   MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLHRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H         L     +L     +P G+LRIA   D         + +FL  YP
Sbjct: 61  QAGEDFHERCVGAVDGLMDAAEQLVSHREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 LVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDTMVASPAYIAAHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P S+Q L  H  ++     P     +  L   D  + E +++     N+  ++ +  + G
Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K R
Sbjct: 237 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 296

Query: 296 DWKF 299
           D  F
Sbjct: 297 DKAF 300


>gi|127514147|ref|YP_001095344.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126639442|gb|ABO25085.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 303

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 17/294 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA    + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARNTGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++  S +  ++E  +  ++ +     G LRIA  +   Q L+      F+ LYP++ 
Sbjct: 63  ALFYQHCSSISDEIEAAKATIENTHNDVFGSLRIAIPVSFSQELIASLCSSFMRLYPNVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDSDVGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKANGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           Q+L +H+ I  G      + P    +   +    R +        +VNS + + Q  +  
Sbjct: 182 QDLKEHSGILLGTSRSAPIWPLGKGERKTMVNFKRKV--------RVNSAIMVKQLVLDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GIA+L + + K+     +LV ++++     F VY  Y    +    +  F +F
Sbjct: 234 FGIAMLSNSVCKNELAGGSLVPLLQEWPMEPFKVYGVYSSRRQLATNISVFLDF 287


>gi|161524400|ref|YP_001579412.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350845|ref|YP_001946473.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221198354|ref|ZP_03571400.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221208293|ref|ZP_03581297.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221215425|ref|ZP_03588389.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160341829|gb|ABX14915.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189334867|dbj|BAG43937.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221164609|gb|EED97091.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221171941|gb|EEE04384.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221182286|gb|EEE14687.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 301

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 128/273 (46%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFVAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LRI      G+  +   + +F   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRITAPAGFGRRHVAPLVPDFSGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ EL
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPTTLAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWTFQEDDKVVSIRVSGTMECSDGAVLHEWCLAGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + V D+     LV +++    P   ++  +P+
Sbjct: 242 WWEVGDDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274


>gi|118161424|gb|ABK64105.1| putative LysR family transcriptional regulator [Janthinobacterium
           lividum]
          Length = 305

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 134/288 (46%), Gaps = 6/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +RVF  + RS     AA++L +  S++SR++   E +VG +LF R+  G  LT +
Sbjct: 2   LDWDNVRVFLELTRSAGLVDAAKKLGIDHSTVSRRMRKFEEQVGTQLFDRNYVGYQLTPE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +   +     EL E +   SG++R+  T   G  +L  +L +F   YP I
Sbjct: 62  GHRLMEYAETMESTVFAATEELGEHNRLLSGQVRLGATEGFGAIVLAPHLAQFCGRYPHI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + LI   + + +S   AD AI + +P+ S   +  KL    +  YA P YL       S
Sbjct: 122 SVDLIAVPRFVSLSKREADVAISIERPL-SGPYVVTKLSDYRLKLYATPAYLARHAPITS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +H +I + D +    E    L  +D  +    +   +  S ++       G  +A
Sbjct: 181 VAQLAQHPIIGYVDDLVFSSE----LRYMDN-VAPDSLRAFRSTSVIAQYHAARAGQALA 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP ++ + +  LV +++  I      +   P   +N  ++ A  N++
Sbjct: 236 ILPCFVAQQSNELVPVLDGDIDLLRAFWMISPSERRNIARVSALWNYL 283


>gi|78066418|ref|YP_369187.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967163|gb|ABB08543.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 308

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 144/290 (49%), Gaps = 10/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA +G F+ AA ++ ++ SS++R +  LE  +G  L  R  R +TLT+ G+   
Sbjct: 7   LRAFIDVAETGGFSKAARRMGVATSSVTRLMDALEQSLGSALLTRTTRQVTLTDAGAAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + V   L+     + ++ +   G LR++  +  G+  L  ++  FL  +P + + L+
Sbjct: 67  EQITRVLSDLDEADGSVSDTGIDAVGPLRVSMPVTFGRLCLGPHIASFLQQHPRVSLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D++ +  D A+R+  P    +LI  +L   H +  A+  YL++   P S ++L 
Sbjct: 127 LSDSTLDLAAERIDVAVRIGSPANQPNLIVNRLAEHHRYVVASHDYLQSNGVPASPEDLR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F       ++ +++  T D  +       L VN+   + +  + G GIALLP +
Sbjct: 187 HHQCLRFA--YEAALQRWSFTRT-DGTVHVEINGRLSVNNSDVLREAVISGFGIALLPQW 243

Query: 248 IVKDN---PNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           +V+++     L R+ ED  + P   +  VY  Y    +++ K+ A  +F+
Sbjct: 244 LVEEDVVAGRLRRLFEDYSVNPLDQTVCVYAAYLPNRRHSRKVHALLDFL 293


>gi|241205403|ref|YP_002976499.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859293|gb|ACS56960.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 300

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 141/300 (47%), Gaps = 15/300 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 3   DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    +  F   YP IQ
Sbjct: 63  RAYYDRCSEPLAHLLDAEHALTETQRKPEGLLKISVPVIFGQEVFYEFVSAFQKTYPKIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L + N  +D+  +  D AIR    ++ S+++ ++L     +  AAP YLK    PL  
Sbjct: 123 VDLFVTNLFLDLIAENIDLAIRFGD-LKDSTIVAQRLGKSVRYLVAAPDYLKGRVLPLKP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +EL  H  +    L+     +  W     R      +S  +    + ++  +   G GI 
Sbjct: 182 EELKDHQCV----LLNGRNGEAEWHLVSGRKSVRLHVSGPISSRDFDAVSAFTYRGHGIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298
           LLP    ++      L+R++ D  +    V+  YP     T +    R  +FL+A + WK
Sbjct: 238 LLPSTYCEEQIRKGELIRLLPDWSSEEIFVHAVYP-----TRRFLPSRLQVFLEALKAWK 292


>gi|87121640|ref|ZP_01077528.1| substrate-binding transcriptional regulator, LysR family protein
           [Marinomonas sp. MED121]
 gi|86163172|gb|EAQ64449.1| substrate-binding transcriptional regulator, LysR family protein
           [Marinomonas sp. MED121]
          Length = 309

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 141/293 (48%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F V+AR GSFT AAE +  S+S +SRQ++ LE ++G+ L  R  R   LT+QG   +
Sbjct: 10  IQAFVVIAREGSFTKAAELMGCSRSYLSRQLNQLEAQLGVSLIIRTTRAQRLTQQGEAFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +  +K+     +  ES+ + SG L I      +G+ L+   +  F  LYP+I+I+L
Sbjct: 70  QQCQQSLNKIHVAVNQALESASELSGPLNINCVGGYIGETLIMDLINGFSRLYPNIEIKL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             D++ +D+     D   R+   ++ S+LI RKL+ I +   A+P Y KN   P+  +EL
Sbjct: 130 DFDSRRVDLISGEFDFVFRM-GSLEDSALIARKLMDIEIVTLASPEYFKNHGRPIHPKEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSG 240
            +H  IT G +        + LA     + E     +QV    S      ++     G G
Sbjct: 189 KEHACIT-GSIKNWRFVSSHELAADGSALAED----IQVKGPFSCKNGHAMVNNAKAGLG 243

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +P     D      L+ + +D    S      Y +    + KLKAF+ ++
Sbjct: 244 IVRVPVMYCLDEIKEGKLLHLFDDWQAASVAFNLIYLQDAYQSKKLKAFKEYV 296


>gi|167561683|ref|ZP_02354599.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167568920|ref|ZP_02361794.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 324

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q  + KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 67  EHCIKIITEIAETDASFQVGNRKPSGALRVHMPSSLGRRLVIPALPIFHQRYPDIVLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP  I EL 
Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPREIAELA 185

Query: 188 KHNLITF 194
           +H+ + F
Sbjct: 186 EHHAVNF 192


>gi|104779325|ref|YP_605823.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95108312|emb|CAK13006.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 295

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 141/293 (48%), Gaps = 16/293 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEKHLGTALFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ + ++ P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFQRYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  LI RKL    +  YA+  YL       S
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQDYLDRAPPLQS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ I + D +    E    L  ++     P +   +  S ++       G GIA
Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRTPNV-VFRSTSVIAQQHAAQAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIF 291
           +LP+Y+ + +P LVR++     PS T+    + C    L  + +L+   +++ 
Sbjct: 235 VLPNYMARHDPKLVRVL-----PSETIQRSYWICTRRELHKSVRLRVVWDYLL 282


>gi|313499419|gb|ADR60785.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 308

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 135/299 (45%), Gaps = 16/299 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A  GSFT A     ++ +++SR IS LE  +G +LF R  R + LTE G   +
Sbjct: 13  IELFCLAAELGSFTAAGLAAGVTPAAVSRSISRLEERLGSRLFVRTTRSIRLTEGGRGYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   +  +     +PSG LR +     G + +   L EF   YP +Q+ + 
Sbjct: 73  EQCRQALTQLVEAERVVTGQQQEPSGTLRFSLPTTYGHHRILPLLPEFRRRYPKVQVDIH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID   +  D AIR+R     S+LI R L    +   A P YL++  EP S++EL 
Sbjct: 133 LGNRNIDFVGEGYDVAIRVRAQ-PDSTLIARPLEDARLVVVATPDYLEHAGEPQSLEELA 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY------LSIMQYCVLGSGI 241
           +H+ I F   +P       WL   +   G  R   L    Y      L  +     G+G+
Sbjct: 192 QHDCIQF--ELPSSGRRIAWLFDEE---GRER-EVLTEGGYVCSDDVLGGVTLAKHGAGL 245

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                +IV+      +LV ++      S      YP+      +L+AF +FI  K R W
Sbjct: 246 FQTYRFIVERELAEGSLVEVLRPFAGRSRPFTLLYPQGRHMPLRLRAFVDFIMDKRRQW 304


>gi|325521761|gb|EGD00507.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 330

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTEHFPKVVPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+    V   N+   + Q+ +LG G+A+
Sbjct: 186 AEHPSLSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|320324680|gb|EFW80754.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 306

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 138/304 (45%), Gaps = 9/304 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++ D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L +R  R L LT
Sbjct: 4   VALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRKVQQLEIQLGTRLLHRSTRKLVLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H         L     +L     +P G+LRIA   D         + +FL  YP
Sbjct: 64  QAGEDFHERCVGAVDGLMDAAEQLVSGREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 124 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDTMVASPAYIAAHGM 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P S+Q L  H  ++     P     +  L   D  + E +++     N+  ++ +  + G
Sbjct: 183 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 239

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K R
Sbjct: 240 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 299

Query: 296 DWKF 299
           D  F
Sbjct: 300 DKAF 303


>gi|171322119|ref|ZP_02910982.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171092573|gb|EDT37886.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 301

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ EL
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R++  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWAFQEDDRVVSIRVNGTMECSDGAVLHEWCLAGYGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + V D+     LV +++    P   ++  +P+
Sbjct: 242 WWEVGDDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274


>gi|257141237|ref|ZP_05589499.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 305

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V R  SF+ AAEQL +S + +S++++ LE  +G +L +R  R + +TE G +
Sbjct: 8   DDLRVFSAVVRLASFSAAAEQLAVSPAYVSKRVALLEKRLGTRLLHRSTRRVAVTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LRI+++   G+++L   L +F   YP + ++
Sbjct: 68  VFAWAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFSERYPQLDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  IR+   I +  LI ++L T +    A+P YL  C  P  + +
Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPGYLARCGTPRQLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L  H  +     I +    F  W  TV       ++   L  N     +Q+ + G GI L
Sbjct: 187 LAAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               I +  P      L R++ D + P+  V+  YP  L  + K++   +F+
Sbjct: 243 --RSIWEAGPLLASGKLERVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 291


>gi|83716204|ref|YP_438216.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650029|gb|ABC34093.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 335

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V R  SF+ AAEQL +S + +S++++ LE  +G +L +R  R + +TE G +
Sbjct: 38  DDLRVFSAVVRLASFSAAAEQLAVSPAYVSKRVALLEKRLGTRLLHRSTRRVAVTEAGER 97

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LRI+++   G+++L   L +F   YP + ++
Sbjct: 98  VFAWAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFSERYPQLDVR 157

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  IR+   I +  LI ++L T +    A+P YL  C  P  + +
Sbjct: 158 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPGYLARCGTPRQLAD 216

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L  H  +     I +    F  W  TV       ++   L  N     +Q+ + G GI L
Sbjct: 217 LAAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 272

Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               I +  P      L R++ D + P+  V+  YP  L  + K++   +F+
Sbjct: 273 --RSIWEAGPLLASGKLERVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 321


>gi|222084745|ref|YP_002543274.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722193|gb|ACM25349.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 309

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 146/297 (49%), Gaps = 22/297 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VA   SF+ AA +L +S S++S+ IS LE  + + LF R  R ++LTE G +
Sbjct: 7   DGLVTFVTVAEEKSFSAAAVRLGVSPSAVSQSISKLEGRMRLALFNRTTRSVSLTEAGLR 66

Query: 66  -LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L RV   V H L     EL E+  KP+G LRI          LQ  L++FL  YPDI++
Sbjct: 67  YLERVVPAV-HDLTAAAQELGEAVDKPAGLLRINVARSGYMIALQPILRDFLDTYPDIEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM------HAYAAPHYLKNCR 178
           ++ ++   +DI     D  +R         L+QR +VT+ +      H  AAP YL    
Sbjct: 126 EVRIEGSLVDIVGQGFDAGVRF------GDLVQRDMVTVKIGPAISAHIIAAPGYLGRYG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            P   ++L  HN I+F       +E   W    D    E  ++  L +N   ++ Q  + 
Sbjct: 180 IPRHPRDLLHHNCISFRHSSSGQIE--RWEFEKDGEKIELAVNGRLILNDSAALTQAALD 237

Query: 238 GSGIA-LLPDYIVK--DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFI 290
           G GIA ++  YI +  D+  LVRI+ D  +PS   +   YP+  +   KL+A  +F+
Sbjct: 238 GIGIAYMINGYIDRFLDDGRLVRILSD-WSPSLAGLALYYPDRRRVPAKLRALIDFL 293


>gi|330992242|ref|ZP_08316190.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter
           sp. SXCC-1]
 gi|329760441|gb|EGG76937.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter
           sp. SXCC-1]
          Length = 299

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 135/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  R+F  V  S SFT AA+ L + +SS+S  I  LE  +G +L  R  R +  T  G+ 
Sbjct: 5   DLFRIFARVVESASFTRAADTLKMPRSSVSAAIQELENRLGTRLLARTTRSVAPTPDGTA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   +E  +   +  +  P G LR      +G+ L+   L  FL  YP+I I+
Sbjct: 65  FYGHCLRLIADMEEAEGLFRPDAAGPRGLLRANMPGRIGRLLVAPALPAFLRRYPEIDIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  D  DC +R+  P+  S LI R++  + +   A+P YL     P    +
Sbjct: 125 LGVTDRVVNLVEDGIDCVLRV-GPLGDSGLIARQMGELALVNVASPAYLARRGTPHHPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           LD H  + +       +ED+ W+   T+       R+S   VNS  +++  C+ G G+  
Sbjct: 184 LDGHEAVRYAAPTTGRVEDWEWMEDGTLHTRALPGRVS---VNSAETLVACCLAGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V+ +     LV +M         +   YP     + +L+ F +++
Sbjct: 241 VPAYDVRHHIAAGELVDVMPRWRPEPMPMALLYPHRKHLSRRLQVFADWL 290


>gi|254488099|ref|ZP_05101304.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214044968|gb|EEB85606.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 295

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 140/290 (48%), Gaps = 15/290 (5%)

Query: 6   DKLRVFYVVAR---SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL V +   R    GSF  AAE L +S + +SR++  LE  +G  L  R  R +++T+ 
Sbjct: 2   DKLSVMHAFRRIVERGSFARAAEDLGVSPALLSREVKLLEESLGSTLLTRTTRSMSVTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +   +   +  +++ +    G L++  +   GQ ++   L  FL  YPDI
Sbjct: 62  GRLYFDEAIGILDAVTNIENRIRDGAGAVRGHLKVNASSSFGQTVIAPVLPGFLETYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L LD++ +D+     D +IR+R  + +S+L+ RK+ T+    +A+P YL++   P  
Sbjct: 122 RLTLSLDDRVVDMIEGGFDVSIRIRAAMPNSALVARKIGTMRQRIFASPSYLEHAGVPQD 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSG 240
            +++ +H ++ F  L+   +  +      D      +P++   +V + L +    + G G
Sbjct: 182 PEDIRRHRVVGF--LLADHLTTWALTGPSDTYALDLDPKV---RVGNSLVLRDLLIAGQG 236

Query: 241 IALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  LPD+ V D P     LVR++     PS  ++      L    K+ AF
Sbjct: 237 IGTLPDF-VSDGPERRGELVRVLPGWELPSPEIFAVTASRLGMDTKVTAF 285


>gi|209517706|ref|ZP_03266543.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501881|gb|EEA01900.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 314

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R + LT+ G +  
Sbjct: 13  IELFCLAAELGSFTLAANAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDAGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   + E+      P+G LRI+     G   +   L  F   YP +Q++  
Sbjct: 73  EQCRQALSQLMDAEREVTGEQTTPAGVLRISMPTPYGHYRVLPLLPAFRERYPQVQVETH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID + +  D AIR R P   S+L+ RKL    M   A P YLK    P ++ +L 
Sbjct: 133 LSNRNIDFADEGFDLAIRGRAPA-DSNLVARKLEDAEMVVVATPAYLKRAGVPKTVADLQ 191

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H  I F   +P       W    +  DR +   R S       L+ +     G+G+   
Sbjct: 192 AHECIQFD--LPSSGRHLAWTFEDSHEDRDV-LTRGSFATSGDALAGVTLARAGAGLFQT 248

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++V+D+     LV ++ +    +      YP A   T +++AF +F+
Sbjct: 249 YRFVVEDDLREGRLVEVLREAGGRTRPFILLYPHARYLTSRVRAFVDFL 297


>gi|239814919|ref|YP_002943829.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801496|gb|ACS18563.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 298

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 138/296 (46%), Gaps = 20/296 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++LR F  VA +G  + AA +L +S+S +SR++S LE E+G++L  R  RG  LTE 
Sbjct: 1   MDIEELRTFVEVADAGGVSSAALRLGVSKSIVSRRLSRLEEELGVQLLARSTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118
           G+      + V       +I++   ++ P+    G+LR+A    LG       L E    
Sbjct: 61  GATFRDHAARV-----CAEIDVAREAILPAGDLRGRLRVAAPFSLGPTHFAPILAEMARR 115

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P + IQ    ++ +D+  +  DCAIR+   +  S+LI R++  +H    A+P Y+K   
Sbjct: 116 HPGLHIQTCYSDRFVDLIAEGYDCAIRIGY-LPDSNLIARRIGPVHGKLVASPAYVKAHG 174

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P + +EL  H  +  G      + D +   TV RP G       + ++  +++     G
Sbjct: 175 SPETPEELLAHQALMQGTEA-WHLTDGDKTITV-RPQGR-----FKADNGTALVAAATAG 227

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GIA LPD++  +   +  LV +M     P    Y   P       K++     + 
Sbjct: 228 LGIAYLPDWLTHEHVASGALVPVMTRHPPPPAGAYVVRPPGQHPARKIRVLTELLI 283


>gi|117922006|ref|YP_871198.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614338|gb|ABK49792.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 331

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 139/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  GS 
Sbjct: 4   EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  +L+ T  E+     + SG LRI        N+L   +  F+ L+P + ++
Sbjct: 64  FYQRSLNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMNVLMRAIFRFMDLHPRLTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I   + +D+  +  D A  +   + +  L+ R + T  +  YA+P YL     P + QE
Sbjct: 124 VINSAESVDMVKNNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPEYLAEHGTPRTPQE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           ++ HN+  F     K   +  W+        E R+      NS    +++ + G GI   
Sbjct: 184 IESHNVSLFRLSNGKIFNEL-WIGAEQ----EVRVRGNFCSNSVEVAVEFALQGRGIVYA 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P  +V +      LV ++ ++       Y  YP     +   + F +FI 
Sbjct: 239 PTEVVAEYVAAGQLVTLLPEIDPHPGEFYLAYPSRRYVSLASRRFIDFIL 288


>gi|115350177|ref|YP_772016.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115280165|gb|ABI85682.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 296

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 137/293 (46%), Gaps = 13/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G
Sbjct: 5   NLNGIAAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +       +  +  S+  P GKLR++  + +G   L   L EF   YPD++
Sbjct: 65  RHFYERCQRILEDFRDAEATVTASAQHPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVE 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + 
Sbjct: 124 LDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRAP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSG 240
            +L+ H+ + +    P   +  +W LA  D   G P    + +  N+  ++    + G G
Sbjct: 183 HDLEAHDCVRY--CFPTTGKLQDWALAAAD---GTPLKLRTAMTCNNMEALRGAVMAGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +PD++ +   D   LV +++D           +P + + + KL+ F +F+
Sbjct: 238 IGYMPDFLARDALDTGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 290


>gi|330992266|ref|ZP_08316214.1| HTH-type transcriptional activator ttdR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760465|gb|EGG76961.1| HTH-type transcriptional activator ttdR [Gluconacetobacter sp.
           SXCC-1]
          Length = 301

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 18/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F ++A +GS    A  + +S +++SR++S +E  +G +L  R +R   LT +G +LH
Sbjct: 8   LKFFCILAAAGSIAGCARAMGMSPAAMSRRLSAMEARLGTRLVTRTSRHFALTAEGQRLH 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H +E  + EL   + +P G LR+    +LG+ +L G +  F+  YP++ + LI
Sbjct: 68  EHAVRIMHDVEEAEAELTARADRPHGLLRVGVPSELGRKMLAGVVATFVEQYPEVTVHLI 127

Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L +  +D+  D  D AIR   P    + ++SL+  + V       A+P Y      P + 
Sbjct: 128 LSDAGLDVIDDGLDIAIRPGMPTDQEVMTTSLLNSRRVVC-----ASPEYCARKGLPATP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
            +L KH+ I    LI +    FN W+    R   E  ++  L  +S   +  + V G GI
Sbjct: 183 HDLLKHDCIC---LIRR-QRIFNEWVYLDGRVRKEVHVTPRLATSSSEVVHDWAVSGRGI 238

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFI 290
           AL   + + D+    R++E +   ++   T++  YP       + + F +F+
Sbjct: 239 ALKVLWDIADDLKCGRLIECLSAYAWEDVTLHAVYPSRTHMPPRTRFFLDFV 290


>gi|167838477|ref|ZP_02465336.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 305

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 146/292 (50%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE G +
Sbjct: 8   DDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++  T ++   ++    ++  +   P G LRI+++   G+++L   L +F   YP + ++
Sbjct: 68  VYAWTEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFNERYPQLNVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  IR+   I +  LI ++L T +    A+P YL     P  + +
Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPGYLARHGTPRQLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L  H  +     I +    F  W  TV       ++   L  N     +Q+ + G GI L
Sbjct: 187 LAAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               I +  P      L R++ D + P+  V+  YP  L  + K++   +F+
Sbjct: 243 --RSIWEAGPLLASGKLKRVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 291


>gi|167614649|ref|ZP_02383284.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 305

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V R  SF+ AAEQL +S + +S++++ LE  +G +L +R  R + +TE G +
Sbjct: 8   DDLRVFSAVVRLASFSAAAEQLAVSPAYVSKRVALLEKRLGTRLLHRSTRRVAVTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LRI+++   G+++L   L +F   YP + ++
Sbjct: 68  VFAWAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFSERYPQLDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  IR+   I +  LI ++L T +    A+P YL  C  P  + +
Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPGYLARCGTPRQLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L  H  +     I +    F  W  TV       ++   L  N     +Q+ + G GI L
Sbjct: 187 LAAHQCLA----IKERDHPFGVWRFTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               I +  P      L R++ D + P+  V+  YP  L  + K++   +F+
Sbjct: 243 --RSIWEAGPLLASGKLERVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 291


>gi|3169721|gb|AAC17939.1| GstR [Bradyrhizobium japonicum]
          Length = 342

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 12/292 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F     SGS + AA  L  S +++SRQIS LE   G +L  R  R L LT+ G  L+  
Sbjct: 50  TFVRAVDSGSLSAAARSLPSSLTAVSRQISALEQHFGTRLLVRTTRQLALTDDGRMLYER 109

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +++  +  L  S  +PSG+LR++    +G+ L+   L +FL   P + + L+L 
Sbjct: 110 AKSILGEVKEIEEALAGSRREPSGRLRVSAPTLMGRLLIAPLLGDFLHACPSLSVDLLLV 169

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++++++  +    A+R+ + I  S L+ RKL  + M   A+P YL    EP S  +L +H
Sbjct: 170 DRNVNLIEEDVHLALRVGR-IPDSQLVTRKLAEVQMIHCASPGYLARRGEPQSPSDLPRH 228

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPD 246
           + + F D        F   A      G  RI     L VNS  ++      G+GI  +P 
Sbjct: 229 DCLVFSDAPGAATWRFGRDAK-----GGSRIRIAGRLWVNSLDALASAAENGAGIVRVPS 283

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + V+       L R++ +       ++  Y  +   + K++AF +F+  + R
Sbjct: 284 WQVERQLAEGRLRRLLREHEPAPAPLHALYQPSRLGSAKIRAFIDFLVERWR 335


>gi|33603466|ref|NP_891026.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33577590|emb|CAE34855.1| probable LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 296

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 145/304 (47%), Gaps = 29/304 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  +G++L  R  R + LT
Sbjct: 1   MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERGLGMRLLNRSTRRIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +  +      +LQ+ + +P G+LRI+    L Q  L   + EF  LYP
Sbjct: 61  EAGALYFERCRHIVEEARVAHEQLQDMAAQPKGRLRISLPTSLAQLFLTDVIPEFRSLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI+    L  + +D   +  D  +R  ++P   SSL+ R++V +  H YAAP YL    E
Sbjct: 121 DIECDFDLSMRPVDPISNPFDLVLRFGQQP--DSSLVARQIVLMTQHLYAAPQYLALHGE 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           P    +L  H       L P   + F++  L + D      ++  +QV+  L+     +L
Sbjct: 179 PRVPADLGHHEC-----LRPSMSDAFSYWVLQSGD------KVERVQVSGRLAANNIGML 227

Query: 238 G----SGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G     G+ + P  ++ D+         LVR++ D       ++   P  +    K +AF
Sbjct: 228 GRLASQGLGITP-LVMSDSMTRAIRQAGLVRVLPDWALTPIPLFALMPSRMV-PAKTRAF 285

Query: 287 RNFI 290
            +FI
Sbjct: 286 LDFI 289


>gi|253689926|ref|YP_003019116.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756504|gb|ACT14580.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 298

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 143/285 (50%), Gaps = 9/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ + ++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSITLTAEGSLFLAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  ++EL ++   P G+LR+  ++ L  +L+   L EF+  YP+I++ L   
Sbjct: 69  SRRILAEIEAAELELSQTKAVPRGRLRV--SLPLVSSLVLPVLGEFMREYPEIELDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R   P+  S L  R+L T      AAP YL     P +  +L +H
Sbjct: 127 DRMVDVIEEGFDAVVRTGDPVD-SRLTARRLGTFRFLVVAAPDYLARYGCPQTPADLMQH 185

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +    P   +   W L         P  + +  N+  + + + + G GIA LPD+ 
Sbjct: 186 ACLHY--RFPNSGKLEPWALRLPPGEPELPLPTSMICNNIETRVCFALQGLGIAYLPDFS 243

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++      L  I+ D +  S   +  +P +   + K++AF +F+
Sbjct: 244 IREQLAGGQLQPILTDYVERSGVFHVLWPASKHPSPKVRAFVDFL 288


>gi|167569550|ref|ZP_02362424.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 307

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 141/296 (47%), Gaps = 11/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L  R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLNRTTRKVTPTQDGTA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S+V PSG LR+     +G+ ++   L  FL  YP I I 
Sbjct: 65  LYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPGFLDQYPQISID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DCA+R+   +  S LI R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRTVNLIEERVDCALRV-GTLSDSGLIARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I +       +  + W+   TV+R   + R++   VNS  + +  C+ G G+  
Sbjct: 184 LARHRPINYASPSSGRVAPWEWVEGDTVERLALQGRVT---VNSAEAYIACCLSGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKA 294
           +P Y V  +     LV ++ D       +   YP     + +   F +++   LKA
Sbjct: 241 IPAYDVDTHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFHVFADWLETLLKA 296


>gi|116250546|ref|YP_766384.1| LysR family transcriptional regulator protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255194|emb|CAK06268.1| putative LysR family transcription regulator protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 293

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 136/289 (47%), Gaps = 9/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P++
Sbjct: 61  GEVFLASAERMETEMLAAQASLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S+  AD AI L +P Q   L+  KL    +  YA+  YL +   P  
Sbjct: 121 KIQLVPVPRSFSLSLREADIAITLERPDQ-GRLVSSKLTDYTLGLYASRDYLASQGTPAD 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           I  L  H  I +  DLI     +F+         G       ++++ +   +    G+GI
Sbjct: 180 IDALKAHRRIGYVEDLIFTASLNFSGAVMRSWDAG------FEISTAIGQTEAVRTGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +L DYI +  P L RI+ +V +     +  Y E  ++  ++++  +F+
Sbjct: 234 GILHDYIARQYPELQRILPEV-SIRRAYWTTYHETARDLLRVRSVADFL 281


>gi|70730265|ref|YP_260004.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344564|gb|AAY92170.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 304

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 141/291 (48%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AA+ L +  +S++  I  LE  +G++L +R  R ++ T  G+
Sbjct: 4   FNAMRVFTRIVELGGFAKAADSLQMPPASVTILIKQLEAHLGVQLLHRTTRQVSPTLDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   LE ++     +   P G LRI   + +G+ L+   L EF   YP I++
Sbjct: 64  AYYQRCVRLLADLEESEAAFSLARHNPRGLLRIDMPVGIGRLLVIPALPEFSARYPQIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L+++ +D+  +  DCA+R   P    SL+ R L  +     A+P YL+    P + Q
Sbjct: 124 EIGLNDRPVDLIREGVDCALR-GGPALDESLVARPLAQLQQVTCASPGYLRQRGVPRTPQ 182

Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIA 242
           EL  H ++  F ++  K      + A   +P+  P R++    + YL+    C  G G+ 
Sbjct: 183 ELQGHQMVEYFSNVSGKRYGLEFFFAGQLQPVQLPKRVAMNSADGYLAA---CEAGYGLI 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P Y V     +  L R++ED   P+  +   YP     + +L+ F +++
Sbjct: 240 QTPYYHVARQLQDATLQRVLEDYPLPALPLTALYPPQRHLSTRLRVFIDWL 290


>gi|77362164|ref|YP_341738.1| LysR family transcriptional regulator [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877075|emb|CAI89292.1| putative transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 280

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 138/264 (52%), Gaps = 28/264 (10%)

Query: 23  AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82
           AA+QL ++ S++S+QI  LE EVG+ LF R  R L+LTE G   ++   ++    E T+ 
Sbjct: 4   AAKQLGMTTSAVSQQIKTLEQEVGLNLFNRSPRSLSLTEAGDIYYQSCKKLLQTAEQTKQ 63

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
           +LQ  +  PSGKL++   +  G  LL   LK  + L+P + I+LIL ++ +D+  + AD 
Sbjct: 64  KLQYLTGIPSGKLKLVAPVGFGAGLLSEPLKRLIELHPKLNIELILTDEPVDMLKEGADL 123

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPLS-----IQELDKHNLITFGD 196
           A+ +  P+  S+LI RKL          P+ L  N   PL+     I++L++H  I    
Sbjct: 124 ALCI-GPLNDSNLIARKLAQW-------PYALCVNATHPLAINDQCIEQLNQHAHIAHSH 175

Query: 197 LIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD--- 251
           L      ++        P  +  PRI   +VN+  S++Q    G G A+LP+  V++   
Sbjct: 176 L------NYQLFKPNSAPYTLNAPRI---KVNNMQSVIQLVCDGLGYAMLPEPEVRERIK 226

Query: 252 NPNLVRIMEDVITPSFTVYFCYPE 275
           N  L ++ +D    ++TVY   P+
Sbjct: 227 NKELKQLHKDWQRSNYTVYAVTPK 250


>gi|238895494|ref|YP_002920229.1| LysR-family transcriptional regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238547811|dbj|BAH64162.1| LysR-family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 306

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 142/295 (48%), Gaps = 15/295 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AA+ LH+S++++++ I  LE+ + ++L +R  R L +T  G+
Sbjct: 4   FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLESRLRVRLLHRTTRKLGVTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPDIQI
Sbjct: 64  VYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++++D+  D  DC +R  + I   SLI R +  + +  Y AP Y++    P   +
Sbjct: 124 DMGVSDREVDLIGDNVDCVLRGGQ-ITDQSLIARHVGDLQIGVYVAPSYVERLGAPAHPR 182

Query: 185 ELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL   +    G L  +  + D   L + +  I       L V+   + ++  ++G G+  
Sbjct: 183 ELQNTDHCIVGFLSSRTSKIDPLVLCSENERIEITGNYVLAVDDGNACLEAGLVGLGVIA 242

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT--------VYFCYPEALKNTGKLKAFRNFI 290
           LP+Y+   +  +       + P FT        +Y  +P       KL+ F ++I
Sbjct: 243 LPNYMAAAHQAV-----GALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWI 292


>gi|186472744|ref|YP_001860086.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195076|gb|ACC73040.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 304

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 143/290 (49%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  V  + SF+  +E L L ++ +SR I  LE  VG++L  R  R +++TE G+
Sbjct: 4   FEAMEIFTRVVDANSFSKVSEMLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++   +  L      P+G +R+ T+  L + LL   L +F   +P+I +
Sbjct: 64  LFYERCVRILAEVADAESSLSNKRETPAGTIRVDTSGTLARALLLPVLDDFYQRFPEIDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +++ID+  D  DC IR+   ++ SSL+ +++ +  +   A+P YL     P +++
Sbjct: 124 RLGLADRNIDLIQDGVDCVIRM-GMLEESSLVAKRIGSSRIVTCASPAYLDKHGTPRTLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  + +  +  +    F +   V D  +     S L VN     +    LG GI  
Sbjct: 183 ELAEHQAVNY--VSARTGRTFPFEYNVGDEVVKVQMKSVLAVNDGSVYINAGALGHGIIQ 240

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++V +  N   L  I+ +  +PS  +   YP     + +L+AF +++
Sbjct: 241 PSRFMVAELINQGALREILTEYDSPSTPLSIVYPHRRNLSSRLRAFVDWV 290


>gi|107023527|ref|YP_621854.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690610|ref|YP_836233.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893716|gb|ABF76881.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648699|gb|ABK09340.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 294

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 11/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S+I ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              V  +++  + EL +S   P G+LR++  TI     LL   L +F+  YP+I++ +  
Sbjct: 69  CRRVIAEIDAAEQELTQSVEAPRGRLRVSLPTIG---TLLLPVLADFMAAYPEIELDIDF 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  +  D  +R   P   S L  R L     H  A+P YL+    P +  +L +
Sbjct: 126 SDRIVDVIDEGFDVVLRTGHPTD-SRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLAQ 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  + +    P   +   W     R    P +    V N+  + + + + G GIA LP++
Sbjct: 185 HRCLHY--RFPSSGKLEIWPLRAPRAGTPPEVPVSMVSNNAETRLCFALRGLGIACLPEF 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+D   +  L  +++D +      Y  +P       KL+AF +++
Sbjct: 243 FVRDTLADGRLRAVLDDHVASRTPFYVLWPSGRHPLPKLRAFVDYM 288


>gi|146311693|ref|YP_001176767.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145318569|gb|ABP60716.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 301

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 135/288 (46%), Gaps = 8/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT AA+ L+L  +++S+ +  LE  +G++L +R  R +  T +G   +
Sbjct: 7   MRAFTRVVETGNFTRAADSLNLPNATLSKLVKSLEAHLGVRLLHRTTRRVVATPEGQDYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S V   +E        S  +P G LRI       + +L   L +FL  YP+I+I L 
Sbjct: 67  EKASRVLIDIEEIDTSFSASQRRPKGYLRIDIGGSTAREVLIPALPDFLKRYPEIKIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           + ++ +D+     DC IR   P+  SSLI R +    M   A P YLK    P    EL 
Sbjct: 127 VSDRPVDLISGNVDCVIR-GGPLNDSSLIARHIGDATMVTCATPGYLKAAGVPAYPDELR 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
           + H L+++  L P     F +   ++  + E +    + VN   + +   V G GI    
Sbjct: 186 NGHKLVSY--LSPLTGRAFPFRFIIEGEMRELKTQHHIGVNESNAHLAAAVAGMGIIQTF 243

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y  KD   +  LV I++     S+  +  YP+    T +L+ F +++
Sbjct: 244 CYAAKDALKDGTLVEILQAWRPASYPFHVVYPQNRHMTHRLRVFIDWL 291


>gi|254469575|ref|ZP_05082980.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211961410|gb|EEA96605.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 298

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 131/277 (47%), Gaps = 12/277 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR   ++  V   GSF  AA+  ++S + + R +S LE  + ++L  R  R + +TE 
Sbjct: 2   DKLRKMALYCRVVELGSFVAAAQDQNVSPAIVGRHVSDLEAMLKVRLINRTTRSMEVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIEL-QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G + ++       +L   + ++  E     SG +R+A    LG   L   ++ F   YP+
Sbjct: 62  GHRYYQGCKISLAQLAALEQDMTNEEGEALSGIIRLAAPEGLGAPHLLSAIESFQGFYPN 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I   L+LDN   D   +  D +IRL   +Q SSLI RKL    +  YAAP YL     P 
Sbjct: 122 ILFDLVLDNGQTDFISENVDLSIRLAISMQDSSLIVRKLTDTRLCFYAAPSYLAKHGTPK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
            +++LD+H  + FG          +W    D  + + R+   + VN      +  + G G
Sbjct: 182 KLEDLDQHACLAFG----ASRFGDSWPIVTDMGLSKYRLPWRVVVNQTQFYRKALMKGMG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYP 274
           I LLP+ +V    ++ +L  +  DV  P   +Y  YP
Sbjct: 238 IGLLPEIMVAEQAEDGSLTPLSLDVTLPEVGIYTVYP 274


>gi|149374844|ref|ZP_01892617.1| probable transcriptional regulator [Marinobacter algicola DG893]
 gi|149360733|gb|EDM49184.1| probable transcriptional regulator [Marinobacter algicola DG893]
          Length = 304

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 12/259 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSF+ AA    L+ S+ S+ I+ LE  +G KL +R  R + LT +G   +
Sbjct: 12  MEIFSTVVEQGSFSKAARVCRLTPSAASKAITRLEKRLGTKLIHRSTRQMQLTAEGRWFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  + +   SSV+P+G LRI  +  +G   L   + +FL  YP I ++L 
Sbjct: 72  ERCRHILSDLEEAE-QGASSSVEPTGHLRITASFPVGHGFLIPIVTKFLARYPGITLELS 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  ++ D AIR   P+ +S+L+ RKL    M    AP YL+    P++++EL 
Sbjct: 131 LTDQVVNLLAEHTDVAIR-NGPLGNSNLVARKLGETRMVIVGAPEYLERRGVPVTLEELR 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIALLP 245
            HN + F            W  T D    E  P+ S L V+   ++ +  + G G+A L 
Sbjct: 190 THNRLGFN----FSRHTATWPLTFDGEQTELAPQGSLL-VSDGETMRKMAMEGVGLARLT 244

Query: 246 DYIVKDN---PNLVRIMED 261
            ++V ++     LV +ME+
Sbjct: 245 RFLVDEDIRQGRLVPVMEE 263


>gi|83720634|ref|YP_441189.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|257140145|ref|ZP_05588407.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83654459|gb|ABC38522.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 324

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G +L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVEANSFTRAAETLGMPRASVTTIIQNLEALLGARLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q    KPSG LR+     LG+ L+   L  F   YPD+ + L 
Sbjct: 67  EHCIKIITEIAETDASFQVGKRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPDVVLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP+ I EL 
Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPMEIAELA 185

Query: 188 KHNLITF 194
            H+ + F
Sbjct: 186 AHHAVNF 192


>gi|331016585|gb|EGH96641.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 303

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 140/300 (46%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + +F  V RSG+F  AA QL +  +++SR+I  LE ++G +L  R  R L LT
Sbjct: 1   MIADLNDVALFVQVVRSGNFAQAARQLGMPSNTVSRRIQHLEVQLGTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +   +     L +   +L     +PSG++RIA   D         + +FL  YP
Sbjct: 61  QKGEHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+        A+P YL     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P S++ L  H+ ++     P     +  L   D  I + ++S     N+  ++ +  + G
Sbjct: 180 PDSLESLQAHDCVSAA--YPGGSTTWRMLGP-DAKIHDVQLSSRFNANTAQALRKATLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIALLP  +++    N  LV ++      S  ++  YP   +    + AF   +  K R
Sbjct: 237 LGIALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLR 296


>gi|330806843|ref|YP_004351305.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327374951|gb|AEA66301.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 292

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 141/289 (48%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++VF  V   GSF+  A +L+L Q ++S+QI  LE  +G  LF R  R L LT+QG 
Sbjct: 4   FDAMQVFVRVVERGSFSAVARELNLGQPAVSKQIRALEQHLGGALFARSTRHLALTDQGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +  + ++   L+  ++       + +G LR+A  +  G+  +   + EFL  +P ++I
Sbjct: 64  RFYAESKDILASLDAARLSFASGQEQIAGLLRVAAPVSFGRLCIAPLVGEFLARHPQLRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +++ D+  +  D AIR+   ++S  L+   L       YA+P YL+   +PL+  
Sbjct: 124 DLRLSDQNEDVLKENIDLAIRI-GVVKSEGLVAISLGDSPRRVYASPAYLQQHGKPLAPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + F  L    +  F+          +  ++C   NS  +I +  + G G++L 
Sbjct: 183 DLVGHNCLAFTLLEHYDVWRFDQDGRQHSVTIKGNVTC---NSSEAIREMVLSGLGVSLS 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++   +     +  ++ D    +  V   +    + + + +AF +F+
Sbjct: 240 PQWLFAADIRQGTVCTVLADYQPLALPVSAVFSHDRRRSARTRAFVDFL 288


>gi|206563054|ref|YP_002233817.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039094|emb|CAR55057.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 296

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 130/283 (45%), Gaps = 7/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR+G+   AA QL++ Q+++ R+I+ LE E+  +LF R      LT  
Sbjct: 1   MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPTLYVLTTA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +     T +  +     + +G +RIATT  LG+  +   +      +  I
Sbjct: 61  GEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDTLGKRFVVPAIARVRRKHAGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  +   +  +++   AD AIR  +P +S  LI R+L  +    YA+  YL    EP++
Sbjct: 121 DVVCVTSAQITNLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRRYLAERGEPVA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D H+L+ +   +   M    W A    P    R+   Q +S + +++  + G GIA
Sbjct: 180 GSAFDGHDLVMYQQPVVPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEATLAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            LP +     P LVR+M       F V+      L  T +++A
Sbjct: 235 ELPCFRADTEPELVRLMPQRCN-HFDVWLVAHTDLYKTARVQA 276


>gi|170736901|ref|YP_001778161.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819089|gb|ACA93671.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 307

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 148/300 (49%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF +V R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R +T+T+ G +
Sbjct: 8   DDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRVAMLEAQLGTRLLHRSTRRMTVTDAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LR++++   G++++   L +F   YP + ++
Sbjct: 68  VFARAEKILDDVDHLVEDVSTTRTVPRGTLRMSSSFGFGRHVVAPALLDFSARYPQLNVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  +R+   I +  LI R+L T H    A+P YL     P S+ +
Sbjct: 128 LDLFDRLVDVAGEGYDLDVRIGDDI-ADHLIARRLATNHRVLCASPDYLARRGTPRSLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI------MQ 233
           L  H+ +   +               D P G  R++       ++V   LS       +Q
Sbjct: 187 LTSHDCLAIKER--------------DHPFGVWRLNVRGETVTVKVGGALSTNHGEVAVQ 232

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + G GI L   +      +   L R++ +   P+  ++  YPE +  + K++   +F+
Sbjct: 233 WALAGRGIVLRSIWEAAPLIERGELCRVLPEATQPA-NIWAVYPERVAASAKVRVCVDFL 291


>gi|295095965|emb|CBK85055.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 295

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 133/282 (47%), Gaps = 21/282 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS ISR +  LE  +G++L  R  R L+LT  G
Sbjct: 7   NYNELYLFIQVVREGSFTAAAQRLGLAQSGISRSVRELEERLGVRLLVRTTRKLSLTHAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++     +  L+T    L      PSG +RI  +    +  L   L  F   YPDI+
Sbjct: 67  EQLYQTAGSAFDALDTGLTRLAHYRQTPSGTVRINASQHAIEKCLLPKLAIFKQRYPDIR 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ +++ +DI  +  D  +RL   +    +  R    + M   AAP + +    P + 
Sbjct: 127 LELMNESRFVDIIAERFDAGVRLGPEVGQGMIAVRITPDMEMAVVAAPAHFRRYGFPQTP 186

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYC 235
            +LD H  I   F D        + W    D      RP G+   S    +SY+   +  
Sbjct: 187 ADLDAHPCIAYQFAD-----GNHYQWELVQDGKHVTHRPEGQWAFS----DSYME-AEAA 236

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            LG G+A +P  +V D+     L+R+++        +Y  YP
Sbjct: 237 RLGLGLAYVPVELVADDLERGTLIRVLQRYSLRMDGLYLYYP 278


>gi|291619366|ref|YP_003522108.1| YhjC [Pantoea ananatis LMG 20103]
 gi|291154396|gb|ADD78980.1| YhjC [Pantoea ananatis LMG 20103]
 gi|327395689|dbj|BAK13111.1| putative HTH-type transcriptional regulator YhjC [Pantoea ananatis
           AJ13355]
          Length = 299

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 131/270 (48%), Gaps = 5/270 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GSFT AAE L L + S+SRQI  LE ++G +L +R  R + LT+ G   +
Sbjct: 7   MQVFVRVAEMGSFTAAAESLGLPKGSVSRQIQALENQMGTRLLHRTTRRVQLTQDGLVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +       Q      SGKLR+  +  +  +L+   L EFL  YP ++I+L 
Sbjct: 67  DRCLDLLSMISDMDSLFQHDPATLSGKLRVDMSAAMATDLILPRLPEFLQHYPGVEIELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  DC IR+ + ++ S LI R++ T  +   A+P YL     P+ ++EL 
Sbjct: 127 SNDRQVDVIREGFDCVIRVGE-LKDSGLIARRIGTHTLINCASPGYLSRFGRPIRLEELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H ++ +   + +  + F +               + VNS  +    C+ G GI  +P  
Sbjct: 186 QHAMVHYSQQLGQPAQGFEFFDGKQCHYVHTG-GVVTVNSTETYRAACLAGLGIIQVPTV 244

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            +    ++  LV ++         ++  YP
Sbjct: 245 GIHKYLESGELVEVLHAFPAKPMPIHLLYP 274


>gi|170695066|ref|ZP_02886214.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170139918|gb|EDT08098.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 302

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 135/272 (49%), Gaps = 12/272 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   A+S SFT AAE+L L++S++ + I+ LE  +G +LF+R  R ++LT  G      
Sbjct: 12  IFVTAAKSRSFTDAAEELGLTKSAVGKAIAKLEDRLGAQLFHRTTRSISLTADGDAYFAA 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +    ++ T +  L   + +P G+LRI      G+ +L   L +    +PD+Q  +   
Sbjct: 72  CASALDEISTAETALGPGNQRPVGRLRIDMPAAFGRRILVPILLDIGRKHPDLQFTMTFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID   +  D  IR  +   SS L+ R+L +  M   A+P YL     P ++++L  H
Sbjct: 132 DHLIDPIEEGVDLVIRFGELESSSGLVARRLTSQRMVIAASPDYLAQRGTPSALEDLKNH 191

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALLPD 246
           + I       +  +  +W   VD  +   RIS     Q++   SI++  + G G+  +P 
Sbjct: 192 SCIVGH----RRGQPLSWRVNVDGEVS--RISPPATHQISDGDSIVEAALAGLGLCQMPM 245

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
            +++   ++  L+ ++ED+ +    V+  +P+
Sbjct: 246 SLLRPHLESGKLISVLEDISSEFIDVHAVWPK 277


>gi|33598521|ref|NP_886164.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33574650|emb|CAE39302.1| probable LysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 296

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 145/304 (47%), Gaps = 29/304 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  +G++L  R  R + LT
Sbjct: 1   MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERGLGMRLLNRSTRRIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +  +      +LQ+ + +P G+LRI+    L Q  L   + EF  LYP
Sbjct: 61  EAGALYFERCRHIVEEARVAHEQLQDMAAQPKGRLRISLPTSLAQLFLTDVIPEFRSLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI+    L  + +D   +  D  +R  ++P   SSL+ R++V +  H YAAP YL    E
Sbjct: 121 DIECDFDLSMRPVDPISNPFDLVLRFGQQP--DSSLVARQIVLMTQHLYAAPQYLALHGE 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           P    +L  H       L P   + F++  L + D      ++  +QV+  L+     +L
Sbjct: 179 PRVPADLGHHEC-----LRPSMSDAFSYWVLQSGD------KVERVQVSGRLAANNIGML 227

Query: 238 G----SGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G     G+ + P  ++ D+         LVR++ D       ++   P  +    K +AF
Sbjct: 228 GRLASQGLGITP-LVMSDSMTRAIRQAGLVRVLPDWALTPIPLFALMPSRMV-PAKTRAF 285

Query: 287 RNFI 290
            +FI
Sbjct: 286 LDFI 289


>gi|298486740|ref|ZP_07004796.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158607|gb|EFH99671.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 303

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 9/304 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L +R  R L LT
Sbjct: 1   MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLHRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H         L     +L     +P G+LRIA   D         + +FL  YP
Sbjct: 61  QAGEDFHERCVGAVDGLMDAAEQLVSHREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 LVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDTMVASPAYIAAHGL 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P S+Q L  H  ++     P     +  L   D  + E +++     N+  ++ +  + G
Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGP-DAKMHEVQMASRFNANTAQALRKATLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K R
Sbjct: 237 LGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLR 296

Query: 296 DWKF 299
           D  F
Sbjct: 297 DKAF 300


>gi|222149796|ref|YP_002550753.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221736778|gb|ACM37741.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 309

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 154/296 (52%), Gaps = 24/296 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE G   
Sbjct: 6   RIRAFIDVVEAEGFSAAARKTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121
           +R  +++  +++     ++E++V  SGK+RI      T  ++GQ+L+     +F L +PD
Sbjct: 66  YRSAADILKEIDNLADLVRENNVGISGKIRITVPRSFTDAEVGQSLI-----DFALQHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+++ +++ +D+  +  D AIR+ K ++ S +I RKL     +A A+P +L+      
Sbjct: 121 LSIEIVAEDRFVDLIEEGFDLAIRVTK-LEDSGMIARKLADFRSYACASPVFLEKYGPLT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISC-LQVNSYLSIMQYCVL 237
             Q+L K  +     LI       N L  + +P GE     IS  L+VNS  + ++  + 
Sbjct: 180 HPQDLSKVPV-----LIDTNTRGHNSL-RLRQPDGEAFTVNISGPLEVNSPQTTLRGALS 233

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIALLPD++ +   ++  L+ I ED +     +Y  YP       K++A  +F+
Sbjct: 234 GLGIALLPDFVARRHIESGALISIFEDYMPSGSGIYAVYPHRRYLPAKVRALVDFM 289


>gi|170701865|ref|ZP_02892794.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133223|gb|EDT01622.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 296

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 137/291 (47%), Gaps = 13/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G  
Sbjct: 7   NGIAAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEGRH 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +       +  +  S+ +P GKLR++  + +G   L   L EF   YPD+++ 
Sbjct: 67  FYERCQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELD 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     P +  +
Sbjct: 126 LDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRAPHD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIA 242
           L+ H+ + +    P   +  +W LA  D   G P    + +  N+  ++    + G GI 
Sbjct: 185 LEAHDCVRY--CFPTTGKLQDWALAARD---GTPLKLRTAMTCNNMEALRGSVMAGLGIG 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +PD++ +   D   LV +++D           +P + + + KL+ F +F+
Sbjct: 240 YMPDFLARDALDTGALVTVLDDYRIAPGQFSIMWPSSRQLSPKLRVFVDFL 290


>gi|33595174|ref|NP_882817.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33565251|emb|CAE36049.1| probable LysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 329

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 137/301 (45%), Gaps = 26/301 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AA+ LH+S++S+++ +  LE  + ++L  R  R +  T  G+
Sbjct: 4   FDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNATADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   LE  +  L  +S  P G+LR+         +L   L  F   YPDI +
Sbjct: 64  AYYERVRQLLADLEDAETSLSGASATPGGRLRVDVPSPFASTILVPALPAFQARYPDILL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++++D+  +  DC IR  + I + SL  R +  + +  YA+P YL     P   +
Sbjct: 124 HLGVSDREVDLIDENVDCVIRGGQ-IGNLSLAARHVGDLQLGVYASPGYLARAGVPAHPR 182

Query: 185 ELD--KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL   +H +I F       L P  M          R   + RI     ++ L       L
Sbjct: 183 ELQDAQHRIIGFSWSRARRLFPCAM----------RRRADERIEVAGRHALLLDEGNAYL 232

Query: 238 GSGIALL-----PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +G+A +     P Y+ +   +   L+R+  D       +Y  YP+    + KL+ F ++
Sbjct: 233 AAGLAAMGVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHVSAKLRVFIDW 292

Query: 290 I 290
           I
Sbjct: 293 I 293


>gi|126175718|ref|YP_001051867.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|152999353|ref|YP_001365034.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|160873968|ref|YP_001553284.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|304411136|ref|ZP_07392751.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307306431|ref|ZP_07586174.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|125998923|gb|ABN62998.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
 gi|151363971|gb|ABS06971.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
 gi|160859490|gb|ABX48024.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|304350329|gb|EFM14732.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306910722|gb|EFN41150.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|315266202|gb|ADT93055.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 303

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 143/298 (47%), Gaps = 18/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIENTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKY-GPLQSSDLVARLLFERQPILVASPGYLKLKGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +EL  H+ I  G      + P        +A   R +        +VNS + + Q  +  
Sbjct: 182 KELSLHSGILLGTSRSAPIWPLGKGSRKTMANFQRKV--------RVNSPIMVKQLAMDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA+L +   K    N  LV I+++     F VY  Y    +    +  F +F F+K
Sbjct: 234 FGIAMLSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISVFLDF-FVK 290


>gi|332978482|gb|EGK15194.1| LysR family transcriptional regulator [Psychrobacter sp.
           1501(2011)]
          Length = 301

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 9/272 (3%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D LR   VF  V   GSF+ AA QL ++ S++S+QI  LE ++G+ L +R  R L+LTE 
Sbjct: 4   DNLRGMAVFASVVGHGSFSGAARQLGITTSAVSQQIRSLEKDLGVVLLHRSTRKLSLTEA 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  +    +V    +  +I++ +   + +G LRIATT +LG N +   L  ++  + D+
Sbjct: 64  GASFYESAKDVVTAADQGRIKVNQLRDELAGSLRIATTPELGVNHILPALSTWMSAHDDL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  + DN  ID+  + AD AIR+   I+ SS+    L  +     A+PHYL+   +   
Sbjct: 124 SIHFLADNHYIDMIDERADIAIRMSPQIKDSSVATYPLAEVKQMLVASPHYLRQHEKITK 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L  H LI+   +      DFN + T  +  +  P  S +Q N+          G G+
Sbjct: 184 PKDLVSHQLISIDLMKDPNTLDFNSIETGKKNRVKLP--SRIQTNNVFLATTLAKEGHGL 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVY 270
             +    V+    +  LV ++ +   P F +Y
Sbjct: 242 VRVMSLDVQKELASGELVEVIPEYSLPHFVLY 273


>gi|237808400|ref|YP_002892840.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500661|gb|ACQ93254.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 303

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 10/287 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V   GSF  AA++L +S    S+ IS LE  +G++LF R  R L  TE G   + 
Sbjct: 8   RMFVAVMDVGSFASAAQRLGISSGQASKLISRLEQNLGVQLFKRSTRALAATEIGLAYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +    +++ +S  PSGK+RI+  +  G   L  +L  F   YP I++ +  
Sbjct: 68  RVKRLLDDYDALNDDIRNTSDSPSGKVRISAPVTFGSMQLATHLIAFAQRYPQIELDVSF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++  D  D A+R+ K +  SSLI RKL  I +   A+P YL     P    EL +
Sbjct: 128 SDRLVNVVDDGFDLALRIGK-LSDSSLIARKLCDIRVIHVASPGYLNERGMPAHWHELSQ 186

Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           H  I    L     + F W     ++ I E P    L+ ++    ++    G GIA LP 
Sbjct: 187 HECI----LDTNFRDPFIWPFLDQNKVIDEYPVNGRLKFSNAEVCLKAACAGLGIARLPS 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  D      +V ++ +   P   +Y  YP A     K +A  +F+
Sbjct: 243 FVAADALRAKEVVPVLTNCELPILGLYALYPPAKHLARKSRAVIDFL 289


>gi|167571846|ref|ZP_02364720.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 305

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 149/302 (49%), Gaps = 35/302 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE G +
Sbjct: 8   DDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++  T ++   ++    ++  +   P G LRI+++   G+++L   L  F   YP + ++
Sbjct: 68  VYAWTEKILDDVDHLVEDVSTTRNVPRGTLRISSSFGFGRHVLAPALLNFNERYPQLNVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  IR+   I +  LI ++L T +    A+P YL     P  + +
Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPAYLARYGTPRQLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233
           L  H          +C+     +   D P G  R+      S ++V   LS       +Q
Sbjct: 187 LAAH----------QCLA----IKERDHPFGVWRLTTRGETSSVKVGGALSTNHGEVAVQ 232

Query: 234 YCVLGSGIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + + G GI L    I +  P      L R++ D I P+  V+  YP  L  + K++   +
Sbjct: 233 WALAGRGIVLRS--IWEAGPLLASGELKRVLPDAIQPA-NVWAVYPARLAASAKVRVCVD 289

Query: 289 FI 290
           F+
Sbjct: 290 FL 291


>gi|170731500|ref|YP_001763447.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169814742|gb|ACA89325.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 294

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 132/284 (46%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G   +  
Sbjct: 9   AFVRTAEALSFVAAGRALGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTDEGRHFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +       +  +  S+ +P GKLR++  + +G   L   L EF   YPD+++ L  +
Sbjct: 69  CQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D  IR   P+  SSL+ R+L        A   YL     P + +EL+ H
Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATLAYLAQAGTPRTPRELEAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + +    P   +  +W    D        + +  N+  ++    + G GI  +PD++ 
Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLTLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +D   +  LV +++D           +P + + + KL+ F +F+
Sbjct: 245 RDALEHGTLVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288


>gi|167562312|ref|ZP_02355228.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 306

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 141/296 (47%), Gaps = 11/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L  R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLNRTTRKVTPTQDGTA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S+V PSG LR+     +G+ ++   L  FL  YP I I 
Sbjct: 65  LYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPGFLDQYPQISID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DCA+R+   +  S LI R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRTVNLIEERVDCALRV-GTLSDSGLIARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I +       +  + W+   TV+R   + R++   VNS  + +  C+ G G+  
Sbjct: 184 LARHRPINYASPSSGRVAPWEWVEGDTVERLALQGRVT---VNSAEAYIACCLSGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKA 294
           +P Y V  +     LV ++ D       +   YP     + +   F +++   LKA
Sbjct: 241 IPAYDVDTHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFHVFADWLETLLKA 296


>gi|229523106|ref|ZP_04412518.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229339956|gb|EEO04966.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 302

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + VF  V   GSF+ AA++L  ++S++S+++S LE ++GI+L  R  R L+LTE G 
Sbjct: 5   FSSIPVFVAVVECGSFSLAAKKLKTTKSAVSKRLSQLEDDLGIRLINRTTRKLSLTEAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +   S+           + E   +P GKL+I   +  G   +   + +F+ +YP ++I
Sbjct: 65  RYYYHVSQALSYARQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYPKVEI 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D+     D AIR+   + +S+L+ ++LVT      A+P YL    EP    
Sbjct: 125 DLQLEDQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCKSVLCASPEYLARYGEPEKPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +          F+      + I  P+   L VN+  +I +  + G GIA L
Sbjct: 184 DLLEHNCLVYTYFRGGNEWTFHHQQQEVKVI--PK-GNLTVNNSEAIRRASLAGLGIAQL 240

Query: 245 PDYIV-KDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V KD     L  +M     P   VY  +PE      K++AF +F+
Sbjct: 241 PTFLVSKDLAGGVLQSVMTHYSLPVHAVYAVFPERKHLPYKVRAFIDFL 289


>gi|119899911|ref|YP_935124.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119672324|emb|CAL96238.1| probable transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 302

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 133/286 (46%), Gaps = 35/286 (12%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD L  F  VA  GSF  AAE+L +S S +SRQ++ LE  +  +LFYR  R ++LTE G 
Sbjct: 11  WDGLEAFVAVADCGSFGGAAERLGVSTSHVSRQVARLEERLQARLFYRSTRRVSLTETGQ 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     +Q+    P G LR+   +  G+  +   + +F+  YP++++
Sbjct: 71  VFLQHCRRLQDGFDEALHAVQDLGGAPKGLLRMTCAVTYGERFIVPLVNDFIERYPELRV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L N  +DI  +  D AIRL + +  SSL+  ++    M+  AAP YL     P ++ 
Sbjct: 131 EIELTNAMLDIVREGYDLAIRLGR-LTDSSLVATRIAPRVMYLCAAPSYLARRGTPQTLA 189

Query: 185 ELDKHNLI-------TFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIM 232
           EL  H+ +        F D   +  E F     NW                + NS  +++
Sbjct: 190 ELAGHDCLLGSADTWVFQD---QGREHFLRVQGNW----------------RCNSGEAVL 230

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
              + G G+A LPDY V ++     L  ++     P   V+  +P+
Sbjct: 231 DAALRGFGLAQLPDYYVLEHLREGRLRALLTAYQPPHTAVWALFPQ 276


>gi|322616203|gb|EFY13119.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620219|gb|EFY17089.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623054|gb|EFY19896.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628344|gb|EFY25132.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634750|gb|EFY31481.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638684|gb|EFY35379.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641033|gb|EFY37679.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645489|gb|EFY42017.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651625|gb|EFY47997.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654472|gb|EFY50794.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658646|gb|EFY54906.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665089|gb|EFY61277.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667833|gb|EFY63993.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671755|gb|EFY67876.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677199|gb|EFY73263.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680138|gb|EFY76177.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685434|gb|EFY81430.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323196031|gb|EFZ81195.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199949|gb|EFZ85037.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202453|gb|EFZ87494.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205754|gb|EFZ90717.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210269|gb|EFZ95167.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216741|gb|EGA01465.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323223241|gb|EGA07581.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223648|gb|EGA07959.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231943|gb|EGA16050.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234470|gb|EGA18557.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237921|gb|EGA21980.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243478|gb|EGA27497.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249476|gb|EGA33390.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253784|gb|EGA37611.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259092|gb|EGA42739.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261233|gb|EGA44821.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266598|gb|EGA50085.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271323|gb|EGA54749.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 302

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 142/292 (48%), Gaps = 13/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + ++  V   GSF  AAE L L + +++R +  LE ++G+KL +R  R +++T++G +
Sbjct: 7   EAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSMTDEGEE 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  +L+  +  L   +  P G+LR+   I L + ++   L +F   YPDI+I 
Sbjct: 67  FYQRCLSLLSELDDVR-RLFSRTQPPKGRLRLDVPITLARAVIIPALGDFQNRYPDIEIV 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DC IRL + +  SS + R+L T  M   AAP YL     P SI E
Sbjct: 126 LGTSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGTPHSIDE 184

Query: 186 L-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI-- 241
           L   H  + F       ++   W  TVD  I   ++ S + V++  + +   + G GI  
Sbjct: 185 LMTSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLAGLGILH 242

Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P    +I      L  I+ D   P   V   YP+      K++ F +++
Sbjct: 243 GLRPSLAPFIASG--ELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWL 292


>gi|75674686|ref|YP_317107.1| LysR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74419556|gb|ABA03755.1| transcriptional regulator, LysR family [Nitrobacter winogradskyi
           Nb-255]
          Length = 309

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 140/291 (48%), Gaps = 11/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    SFT AA+ L L +SS+S  +  LE+ VG +L +R  R +  T  G+ 
Sbjct: 5   DLFRVFVRVVELASFTRAADALVLPRSSVSAAVRELESRVGARLLHRTTRKVVPTPDGTA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   +E T+   ++S+ +P GKL++     LG+ ++   L +F   YPDI++ 
Sbjct: 65  FYKRCLRLLADVEETEALFRQSARRPVGKLKVDVPGRLGRLIIVPALPDFFARYPDIELD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++     D  +R+   +  S LI R +  + +   AAP YL     P +  +
Sbjct: 125 LGVTDRAVNLVEQSVDGVLRV-GVLSQSGLIARSVGVLPLINVAAPSYLGRHGIPETPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242
           LD H  + +       +ED+ W+    V   +   RI+     +Y++    C L G G+ 
Sbjct: 184 LDTHLAVRYASPSTGRIEDWEWIDNGHVRTRVVAGRITVNSAEAYIA----CALAGLGMI 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P Y VK +     LV I+       F + F YP     + +++ F +++
Sbjct: 240 QIPAYDVKPHLAAGELVEILPHHRAQPFPMTFLYPSRQHRSRRVQVFADWL 290


>gi|71065615|ref|YP_264342.1| LysR family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71038600|gb|AAZ18908.1| putative transcriptional regulatory protein LysR family
           [Psychrobacter arcticus 273-4]
          Length = 299

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 134/275 (48%), Gaps = 15/275 (5%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D LR   VF  V   GSF+ +A +L ++ S++S+QI  LE  +G+ L +R  R L+LTE 
Sbjct: 3   DNLRGMAVFASVVGHGSFSGSARELGITTSAVSQQIRSLENTLGVVLLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  +    +V    E  +I++ +   + +G LRIATT +LG N +   L  ++  + D+
Sbjct: 63  GASFYEAAKDVVSAAEQGRIKVNQLRDELAGSLRIATTPELGVNHILPALSTWMSAHDDL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I    DN  ID+  +  D A+R+   I  S+L    L  +     A+P YL+  ++  +
Sbjct: 123 SITYFADNNYIDMIDERIDIAVRMSPNINDSTLSNHPLSDVRQMLVASPQYLRQHKKIET 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRI---SCLQVNSYLSIMQYCVLG 238
            ++L  H LI         M+D N +       G + RI   S +  N+    M     G
Sbjct: 183 PKDLADHQLICI-----DIMKDANNVELTQTETGKKTRIKMTSRIHTNNVFMAMTIAKEG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVY 270
            GI  + +  VK   ++ NLV ++     PSF +Y
Sbjct: 238 HGILRMMEMDVKKELESGNLVEVLTGYQMPSFVLY 272


>gi|319782432|ref|YP_004141908.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168320|gb|ADV11858.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 299

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 125/279 (44%), Gaps = 6/279 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  VAR  SFT AA +L +SQS++S  +  LE  +G++L  R  R ++ TE G +
Sbjct: 7   NELTAFLAVAREESFTRAAAKLGVSQSALSHTVRALEERLGVRLLTRTTRSVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R       ++ET  I L     KP+G +RI+        +L   +   L  YPDI+++
Sbjct: 67  LLRTVGPRLDEIETELIALSALREKPAGTIRISAGEHAADAVLWPAIAPLLPDYPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+D    DI  +  D  +RL + +    +  R    + M    +P Y     +P + Q+
Sbjct: 127 IIVDYGLTDIVAERFDAGVRLGEQVARDMIAVRIGPDMRMAVVGSPTYFATRPKPRTPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN I     +P     + W      R +       L  N+    M   + G G+A L
Sbjct: 187 LTTHNCINL--RLPTYDGLYAWEFEKAGRELKVRVEGQLVFNTAALRMNAVLAGLGLAYL 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
           P+  V     N  LVR++ D   P    +  YP   + T
Sbjct: 245 PEEQVTAHLANGRLVRVLADWCGPFPGYHLYYPSRRQAT 283


>gi|319795206|ref|YP_004156846.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597669|gb|ADU38735.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 300

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 136/286 (47%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GSF+ AA + + +Q ++++QI+  ET + ++L  R+ RG++LTE G+  +
Sbjct: 7   MEMFVRVVETGSFSKAAREFNTTQPTVTKQIAATETRLKVRLLNRNTRGVSLTEPGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E     +Q    +  G LR+ T++  G+ ++     E++  +P +Q+ L 
Sbjct: 67  EKCKTIVRDAEEADSIVQLRQNQAQGLLRVGTSVAFGRRVVVPLALEYMRRHPQVQLDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+     D AIR+ K +  SSL  R L        AAP YLK    P   Q+L 
Sbjct: 127 FEDRYVDLIAQGIDVAIRMGK-LADSSLGARYLGANPWVMVAAPGYLKKHGTPKRAQDLG 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + +  ++    E +        P+  P     + N+  +++     G GIAL+P Y
Sbjct: 186 AHVALIYSSVVGD--EFWRMHTPKGEPVTVPVSGRFRSNNLSAVLAAARDGLGIALMPRY 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  ++     +V ++ D   P   ++  +P      GK+  F  F+
Sbjct: 244 VASESMAAGKVVAVLGDHALPEQEIHAVFPSPKLVPGKVSGFVAFL 289


>gi|313202390|ref|YP_004041048.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441706|gb|ADQ85812.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 300

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 145/296 (48%), Gaps = 7/296 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF  VA   SFT AA+ L L + SIS  ++ LE  +G +L +R  R + LT+ G +
Sbjct: 5   DAMQVFVRVAELASFTRAADSLGLPKGSISNAVTQLEARLGARLLHRTTRKVQLTQDGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++  +++  +   Q++     G+LR+   +++  NL+   L EF+  +P I+I+
Sbjct: 65  FYERCKDLLAEVDEVESLFQQTETLLRGRLRVDMPLNMAHNLVIPQLPEFMQRHPGIEIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D   +  DC +R+   +  S L+ R L T+ M   A+P Y++    P+++++
Sbjct: 125 LSSTDRRVDPISEGFDCVVRV-GVLTESGLVARHLGTLEMVNCASPAYIRQYGMPMALED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H ++ +  ++      F ++ A V R    P  + + VN+  +    C+ G GI  +
Sbjct: 184 LAAHYMVHYVSVLGAKPSAFEYMEAGVSRHCLVP--ARVTVNNSTAYSMACLAGLGIIQV 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P   V+       L+ ++ +       V   YP     + +L AF  ++  K   +
Sbjct: 242 PLVAVRTYLQRGELLELLPEFKPEPMPVSLLYPHRRHLSRRLLAFMEWLTQKVHAY 297


>gi|313111122|ref|ZP_07796950.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310883452|gb|EFQ42046.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 309

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 107/197 (54%), Gaps = 1/197 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++ D + +++   VA + SFT AA  L L+QS +SR I  LE E+G++L +R  R ++LT
Sbjct: 8   IAMDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +   + +  +LE  +  L +    PSG L+I T   LG+ ++   L+E    YP
Sbjct: 68  PDGQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRRYP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +QI+  + ++ +D++ +  D A+RL + +    LI R L  +     A+P YL++   P
Sbjct: 128 QLQIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRSHGTP 186

Query: 181 LSIQELDKHNLITFGDL 197
             +++L  HN  T  DL
Sbjct: 187 ERLEQLAGHNCPTVRDL 203


>gi|167580021|ref|ZP_02372895.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 294

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++    L   +L   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  KP + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGKP-RDSRLSARQLGTFAQVVVGSPDYFARQGAPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W    A+ D  +  P+   +  N+  + + + + G G+A +PD
Sbjct: 186 TCLLY--RFPTTGKLERWPLRPASGDADVEPPQ--SMICNNVETRVCFAIRGRGLACVPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V++   +  L  +++  I      Y  +P     + KL+AF +FI
Sbjct: 242 FAVREELASGRLRTVLDAYIERPQAFYVLWPSGRHASPKLRAFVDFI 288


>gi|284008190|emb|CBA74457.1| LysR family transcriptional regulator [Arsenophonus nasoniae]
          Length = 312

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 141/276 (51%), Gaps = 11/276 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF   A + SF+  AE+LHL++SS++++I+ LE  +GI LF+R  R  +LTE+G+ 
Sbjct: 12  NSLPVFVAAAEANSFSQTAEKLHLTRSSVAKKIAQLEARLGITLFHRTTRTQSLTEEGTL 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        ++E  +  L    ++  GK R++  +  G   +   L   +  YP ++++
Sbjct: 72  YYEYCRRALDEIEKIEDILNSGKLETCGKFRLSMPVLFGHLCIAPLLISLIKQYPKLELE 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +++ ID+  +  D +I +     SS+L+ RK+    M   A+P YL    EP +I E
Sbjct: 132 MSFNDRIIDLIEEGIDLSIYIGTLPDSSNLVARKIGKHRMTICASPSYLAQMGEPQTIIE 191

Query: 186 LDKHNLITF--GDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H  + +   + I K  ++D N      RP      + L ++   +I    +  +GIA
Sbjct: 192 LAQHFAVAYSHSNRIQKWRLKDDNGGIYEFRP-----KTRLMMDDMQAIKDAIISDAGIA 246

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            LPD++V+    +  L  IM      +F++Y  +P+
Sbjct: 247 WLPDWLVRKELIDGRLKEIMPRAGEITFSIYAVWPK 282


>gi|330897904|gb|EGH29323.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 302

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 140/306 (45%), Gaps = 13/306 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+FD + + +F  V RSGSF  AA QL +  ++ISR++  LE ++  +L  R  R L LT
Sbjct: 1   MAFDLNDVALFVQVVRSGSFAQAARQLGMPSNTISRRVQQLEMQLDTRLLQRSTRKLVLT 60

Query: 61  EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           + G + + R    V   +E  + +L     +PSG +RIA   D         +  FL  Y
Sbjct: 61  QAGEEFYDRCVGAVDGVMEAAE-QLASGRDEPSGLVRIAAMADFFDFFSMDWVAGFLARY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178
           P +Q++ +L +   D+  D  D A R   P+Q S  + R+L+   H    A+P Y+    
Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GSPLQDSGYVGRQLIDEGHDTMVASPAYIAVHG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
            P S+Q L  H  ++ G           W L   D  + E  I+     N+  ++ +  +
Sbjct: 179 MPDSLQSLHSHYCVSAGHRGGATA----WRLLGPDTKMHEVHIASRFNANTAQALRKATL 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K
Sbjct: 235 AGLGIALLPATLIRSDLRDGRLVPVLPRYQRTSHGLHVLYPSRQHLPPAVSAFIALVLEK 294

Query: 294 ARDWKF 299
            RD  F
Sbjct: 295 LRDKAF 300


>gi|326316212|ref|YP_004233884.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373048|gb|ADX45317.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 309

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 144/289 (49%), Gaps = 18/289 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R++  V  +G+FT AA+ L L ++++++ +  LE  + ++L  R  R +T+T  G+  +
Sbjct: 7   MRIYARVVEAGTFTRAADSLQLPKATVTKHVQALEARLRVRLLNRTTRRVTVTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +  +  +  +   PSG+LR+     + + L+  +L+EF   YPDIQ++L 
Sbjct: 67  DRAVRLLADFDDIEASMTHARATPSGRLRVDVGTSMARLLIIPHLEEFQSRYPDIQLELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLSIQ 184
           + ++ +D+  D  DC IR  + +   SL+ R++  +     A+P YL+     REPL + 
Sbjct: 127 VSDRIVDLLSDNVDCVIRGGE-LTDQSLVARRIGLLEFITVASPAYLERHGTPREPLDL- 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEP-RISCLQVNSYLSIMQYCVLGSG 240
           E    ++I F    P+    +      D     IG P R++  + N+YL+ +   + G G
Sbjct: 185 ERGHQSVIYFS---PRTSRRYPLEFHRDGESLEIGGPSRLAVNESNAYLAAL---LAGRG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  +     +   D  +LVR++ +   P   VY  YP     + K++AF
Sbjct: 239 VGQITTMQAQRYVDRGDLVRVLPEWSHPLLPVYVVYPPNRHLSAKVRAF 287


>gi|157963506|ref|YP_001503540.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848506|gb|ABV89005.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 316

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 138/280 (49%), Gaps = 23/280 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F+ +  +GS   AA+ L+L +S++SR++  LE E+ +KLF+R +R +TLT  GS 
Sbjct: 4   EDIALFHRIVETGSLVEAADILNLPKSTLSRRLQALEDELNVKLFHRQSRAMTLTASGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  ++ +   LE T  EL     + +G LRI          +   + EF+ L+P++ ++
Sbjct: 64  FYDKSTAMLATLEQTLSELSGEESEVTGHLRILIFPVPELIHITHAIFEFMDLHPELTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+  +  D+  +  D A  L      + ++ R +++  +H +A+P YL     P S  E
Sbjct: 124 IIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHVISEMVHFFASPEYLAKAGRPTSPDE 183

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
           L +HN I F    G +       FN +     P G+ R       L VNS  + ++  ++
Sbjct: 184 LPQHNSILFRYPNGRI-------FNEV-----PFGKDRTLSVKGNLCVNSLATCLEATLM 231

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           G GI+++P    K+   +  L  + EDV       +  YP
Sbjct: 232 GRGISMMPLPFAKEHIASGELEMLFEDVEPYEGKCFLVYP 271


>gi|172059197|ref|YP_001806849.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171991714|gb|ACB62633.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 296

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 140/293 (47%), Gaps = 13/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G
Sbjct: 5   NLNGIAAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +       +  +  S+ +P G+LR++  + +G   L   L EF   YPD++
Sbjct: 65  RHFYERCQRILEDFRDAEATVTASAQRPRGRLRVSLPV-IGYRFLLPVLPEFRQRYPDVE 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + 
Sbjct: 124 LDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPRAP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSG 240
            +L+ H+ + +    P   +  +W LA+ D   G P    + +  N+  ++    + G G
Sbjct: 183 HDLEAHDCVRY--CFPTTGKLQDWALASRD---GTPLKLRTAMTCNNMEALRGAVMAGLG 237

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +PD++ +D  +   LV +++D           +P + + + KL+ F +F+
Sbjct: 238 IGYMPDFLARDALDTVALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 290


>gi|26989225|ref|NP_744650.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24984068|gb|AAN68114.1|AE016443_5 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 308

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 136/299 (45%), Gaps = 16/299 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A  GSFT AA    ++ +++SR IS LE  +G +LF R  R + LTE G   +
Sbjct: 13  IELFCLAAELGSFTAAALAAGVTPAAVSRSISRLEERLGSRLFVRTTRSIRLTEGGRGYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   +  +     +PSG LRI+     G + +   L EF   YP +Q+ + 
Sbjct: 73  EQCRQALTQLVEAERVVTGQQQEPSGTLRISLPTTYGHHRILPLLPEFRRRYPKVQVDIH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID   +  D AIR+R     S+LI R L    +   A P YL++   P S++EL 
Sbjct: 133 LGNRNIDFVGEGYDLAIRVRAQ-PDSTLIARPLEDARLVVVATPDYLEHAGAPQSLEELA 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY------LSIMQYCVLGSGI 241
           +H+ I F   +P       WL   +   G  R   L    Y      L  +     G+G+
Sbjct: 192 QHDCIQFE--LPSSGRRIAWLFDEE---GRER-EVLTEGGYVCSDDVLGGVTLAKHGAGL 245

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                +IV+      +LV ++      S      YP+      +L+AF +FI  K R W
Sbjct: 246 FQTYRFIVERELAEGSLVEVLRPFAGRSRPFTLLYPQGRHMPLRLRAFVDFIMDKRRHW 304


>gi|197284690|ref|YP_002150562.1| LysR family transcriptional regulator [Proteus mirabilis HI4320]
 gi|227357685|ref|ZP_03842034.1| LysR-family transcriptional regulator [Proteus mirabilis ATCC
           29906]
 gi|194682177|emb|CAR41827.1| LysR-family transcriptional regulator [Proteus mirabilis HI4320]
 gi|227162014|gb|EEI47028.1| LysR-family transcriptional regulator [Proteus mirabilis ATCC
           29906]
          Length = 298

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 18/273 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++++VF  V  SGSFT AAE+L L+ S++SR +  LE+++G+ L  R  R L+LT
Sbjct: 1   MKATSEEVQVFIAVVESGSFTRAAEKLALANSAVSRTVKKLESKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   ++  + EL  +   P G LRI     +  +LL   +K+F   YP
Sbjct: 61  EEGEHYFHRMQVILQDMKLAEDELINTQKTPQGLLRIDAATPVVLHLLVPFIKQFQQKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + L+     I++     D AIR+   +  SSL  + L+  +    A P YL    +P
Sbjct: 121 QITLSLVSSETFINLIERKVDIAIRVGN-LTDSSLRAKPLLNSYRKIVATPDYLARYGQP 179

Query: 181 LSIQELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
              ++L  H  +TF + +     P   E+   L   + P+G      +  NS  +I Q C
Sbjct: 180 KIAEDLLDHTCLTFTEPVSLNTWPIERENGQLL---EAPMG------ISSNSGETIRQLC 230

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITP 265
           + G+GIA L D++V    +N   + +  D + P
Sbjct: 231 LEGNGIACLSDFMVVNDIENGRFIELFPDKLRP 263


>gi|170728635|ref|YP_001762661.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813982|gb|ACA88566.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 314

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 138/285 (48%), Gaps = 33/285 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F+ +  +GS   AA+ L+L +S++SR++  LE ++ IKLF+R +R +TLT  GS 
Sbjct: 4   EDIALFHRIVETGSLVEAADLLNLPKSTVSRRLQILEDDLNIKLFHRQSRSMTLTASGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRI-----ATTIDLGQNLLQGNLKEFLLLYP 120
            +  T  +   LE T +EL ++  +  G LRI        +D+   +      +F+   P
Sbjct: 64  FYDKTLSILGDLEQTLVELTDTEAEIDGHLRILIFPVPELLDIANGIF-----DFMDHNP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++LI+  +  D+  +  D A  +      + ++ R+++T  +H  A+P YL     P
Sbjct: 119 ELTVELIVSTEPQDMIRNNIDLAFMVEDSFNENEMVAREMITEELHFVASPDYLAKAGTP 178

Query: 181 LSIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC- 235
           +  ++L KHN I F    G +       FN +     P G      ++ N  L+ +Q C 
Sbjct: 179 VLPEDLAKHNSILFRYPNGRI-------FNEV-----PFGNDMKIAVKGNLCLNSIQLCL 226

Query: 236 ---VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
              + G GIA LP  + +D+     L  + EDV       Y  YP
Sbjct: 227 EASLTGRGIAFLPIELTRDHVERGELTMLFEDVEPYVGKCYLVYP 271


>gi|330810671|ref|YP_004355133.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378779|gb|AEA70129.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 304

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 6/244 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SF  AA  L  S SS++R I GLE   G+KLF R A  +TLTE G +L 
Sbjct: 9   LEAFATVARKRSFVVAARSLGRSPSSLTRAIQGLEERSGVKLFNRSANAVTLTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +         +L   S   +G +R +        ++ G + ++   YPD+ + +I
Sbjct: 69  PHAYRMLDLQREADEDLAGLSGLATGWIRFSAPQSFAHTVIPGLIAQYSQRYPDVSVDVI 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D      D +IR   P QSS LI   L +   + YA+P YL+ C  P SI+ L+
Sbjct: 129 FTDAAVDPVKGKLDFSIRGAFP-QSSDLIGYPLWSYSRYLYASPGYLERCGLPASIEALE 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H LI      P+ ++++N+        G  R+    + +S  ++ Q  + G+GIA L D
Sbjct: 188 QHALIL--HTAPRILKEWNFRGPGQ--AGSFRVHPKFRFSSGAAVFQAALAGAGIARLAD 243

Query: 247 YIVK 250
           ++ +
Sbjct: 244 WLAE 247


>gi|90411129|ref|ZP_01219142.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
 gi|90327975|gb|EAS44296.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
          Length = 305

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 151/308 (49%), Gaps = 27/308 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + VF  V   GSF+ A E+L +++S++S++IS LE ++GI+L  R  R L+LTE G 
Sbjct: 4   FSAIPVFVAVVECGSFSLAGEKLGVTKSAVSKRISQLEAKLGIQLLQRTTRRLSLTEAGE 63

Query: 65  K---LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +     R    + ++ E     LQE   +P G LR+   +  G+  +   + +FL   P 
Sbjct: 64  QYFDYARNALTIANEGEDAISMLQE---QPQGTLRLNVPMVFGRLHIAPMIPKFLQDNPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++++D+K +D+     D AIR+ K +  SSLI +++   H    A+P YLK    P 
Sbjct: 121 IKVEMMMDDKVVDLISGSFDIAIRIGK-LPDSSLIAKRIAPCHSVLCASPDYLKKHGTPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----VNSYLSIMQYCV 236
           +  +L  HN +++          FN          E +IS +      VN+  ++ +  +
Sbjct: 180 TPLDLAHHNCLSYSYFQAGSEWRFNG--------PEGQISVVPKGNYCVNNSDALFEGLL 231

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF----RNF 289
            G G+  +P +IV    +  NL+ ++ +   P   +Y   PE      K+  F    +N+
Sbjct: 232 TGLGVCQMPTFIVASAIEQGNLISLIPEYELPKHAIYAMLPERKHIPAKISIFLAYLKNY 291

Query: 290 IFLKARDW 297
           I  K+  W
Sbjct: 292 IDEKSASW 299


>gi|27375622|ref|NP_767151.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27348759|dbj|BAC45776.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 303

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 12/292 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F     SGS + AA  L  S +++SRQIS LE   G +L  R  R L LT+ G  L+  
Sbjct: 11  TFVRAVDSGSLSAAARSLPSSLTAVSRQISALEQHFGTRLLVRTTRQLALTDDGRMLYER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +++  +  L  S  +PSG+LR++    +G+ L+   L +FL   P + + L+L 
Sbjct: 71  AKSILGEVKEIEEALAGSRREPSGRLRVSAPTLMGRLLIAPLLGDFLHACPSLSVDLLLV 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++++++  +    A+R+ + I  S L+ RKL  + M   A+P YL    EP S  +L +H
Sbjct: 131 DRNVNLIEEDVHLALRVGR-IPDSQLVTRKLAEVQMIHCASPGYLARRGEPQSPSDLPRH 189

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPD 246
           + + F D        F   A      G  RI     L VNS  ++      G+GI  +P 
Sbjct: 190 DCLVFSDAPGAATWRFGRDAK-----GGSRIRIAGRLWVNSLDALASAAENGAGIVRVPS 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + V+       L R++ +       ++  Y  +   + K++AF +F+  + R
Sbjct: 245 WQVERQLAEGRLRRLLREHEPAPAPLHALYQPSRLGSAKIRAFIDFLVERWR 296


>gi|317403588|gb|EFV84079.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 300

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GS T AA +  +S +  ++ I GLET +G++L  R  R  +LTE G   +
Sbjct: 1   MEIFVAVVELGSLTAAAARHEMSAAMAAKHIKGLETRLGLRLMNRTTRRQSLTEAGQAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +   +   V P G LRI +T+  G   L   + ++L LYPD+ ++L 
Sbjct: 61  SRCKAILADIREAEQGAEALRVAPRGNLRITSTVSFGSFALAPAIADYLNLYPDVSVELA 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D A+R+ +P + S L+ R + T  M   AAP YL     P +  +L 
Sbjct: 121 LSDAVEDLVASRYDLAVRIGEP-RDSGLVARPIGTYQMIICAAPAYLARHGTPEAPADLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + F     +           D     P  S    N+  ++ Q  + G GI L P+ 
Sbjct: 180 RHQCLDFSYWSRRTGWRLGGPEGADADF--PPTSRFIANNGQALRQAALAGFGIVLQPEL 237

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ ++     LV I++     +  V   YP+  +   KL  F  F+  +
Sbjct: 238 LLAEDVRAGRLVPILQSYWPAARPVTLLYPKDRQALPKLTTFVEFVVAR 286


>gi|317054023|ref|YP_004118048.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952018|gb|ADU71492.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 291

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 141/288 (48%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR++  V ++G+FT AAEQL LS+  +SR+I+ LE  +G +L  R+ R L++T+ G  
Sbjct: 4   DDLRIYVAVIKAGNFTSAAEQLMLSKQYVSRRIAALEESLGARLLNRNTRKLSVTDNGQL 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R    +   ++  ++ +        G  R++  +  G + L   + EFL L+P +Q Q
Sbjct: 64  FARHAQRILDDVQEAELAVSGRRQVLQGSFRLSVPMSFGISHLSPYIAEFLSLHPALQFQ 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D AIR+   +  S+LI +KL        A+P YL+    P   ++
Sbjct: 124 VELADRYVDMIGEGFDMAIRI-GTLPDSTLIAKKLGEFRRVICASPRYLQGADAPRKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + +G       E F         +  P +S    N+   +    + G G+ LLP
Sbjct: 183 LLDHACLRYGRESQTGWELFRGEQREVINVQGPMVS----NNGEMLRDAAMAGLGLILLP 238

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++IV     + +LV +++D    S ++   YP+  + +   + F  F+
Sbjct: 239 EFIVAPALASGDLVTVLDDWHPSSLSLNALYPQHRQRSEVNRVFMAFL 286


>gi|257454968|ref|ZP_05620216.1| transcriptional regulator, LysR family [Enhydrobacter aerosaccus
           SK60]
 gi|257447678|gb|EEV22673.1| transcriptional regulator, LysR family [Enhydrobacter aerosaccus
           SK60]
          Length = 299

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 140/279 (50%), Gaps = 15/279 (5%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D LR   VF  V R GSF+ AA++L ++ S++S+QI  LE ++G+ L +R  R L+LTE 
Sbjct: 3   DNLRGMAVFASVVRHGSFSGAAKELGITTSAVSQQIRSLENDMGVVLLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  +    +V    E  +I + +   + +G LRIATT +LG N +   L  ++  + D+
Sbjct: 63  GTSFYESAKDVVAAAEQGRIRVNQLRDELAGNLRIATTPELGVNHILPALSTWISAHDDL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I    DN+ +D+  +  D A+R+   +  SSL    L  I     A+PH+L+   +   
Sbjct: 123 TIHFEADNQYVDLIEERIDIALRMSPNLNDSSLSAFPLTEIRQLLVASPHFLRQNEKLTE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRI---SCLQVNSYLSIMQYCVLG 238
            ++L K N+I         ++D N +  ++   G + R+   + +Q N+ +        G
Sbjct: 183 PKDLAKLNMIGIS-----LIKDPNQVDMINVETGKKSRVRMPTRIQTNNIMLATTLAKEG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            G+A +    ++    N +LV ++     PS+ +Y   P
Sbjct: 238 HGVARIMSLDIQKELANGDLVEVLPGYQLPSYMLYAVTP 276


>gi|93006764|ref|YP_581201.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis
           K5]
 gi|92394442|gb|ABE75717.1| transcriptional regulator, LysR family [Psychrobacter
           cryohalolentis K5]
          Length = 288

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 129/256 (50%), Gaps = 10/256 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA   SFT AA +L +S + +SRQ++ LE  +  KL YR  R ++LTE+G 
Sbjct: 3   WDGISEFVYVAEFESFTKAASKLAISTAQVSRQVTALEKRLNTKLLYRTTRKVSLTEEGR 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +  +     KP G++ +   +  G+  L   + +F++ Y DI++
Sbjct: 63  VFYQHCRSILDGLDAAEQAVSNLQSKPQGRINLTAPVTYGEQQLLPLINDFMVQYSDIEV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+ ID+     D AIR+ K +  S+++  KL        A+P Y +    P ++ 
Sbjct: 123 TAFLSNQKIDLIEGGYDLAIRIGK-LSDSTMMANKLSHRTNFVCASPAYFEKYGRPKTLD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL +H+ +  G L     ++    A  +R I   R+S  ++ NS  S++   + G GI  
Sbjct: 182 ELSQHSCL-LGTLDYWHFKE----ADTERNI---RVSGKIRYNSGYSLVDAALKGLGIVQ 233

Query: 244 LPDYIVKDNPNLVRIM 259
           LPDY V+ +    R+M
Sbjct: 234 LPDYYVQKHLATGRLM 249


>gi|239817288|ref|YP_002946198.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239803865|gb|ACS20932.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 301

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 102/187 (54%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VA  GSF+ AA +L +S++S S+ ++ LE    ++L  R  R +TLT+ G  L 
Sbjct: 7   LKTFLEVANVGSFSRAAGKLGISKASASKHVATLEARFNVRLMNRSTRSVTLTDAGRLLQ 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             ++ +   +E+TQ ELQ    +PSG+LR+A    L Q      L EFL LYPD+ I L 
Sbjct: 67  LRSAPLMEMVESTQSELQAHGSRPSGRLRVAGLHGLVQTDFPSLLSEFLTLYPDVHIDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+ +D+  +  D A+R  + I   +LI R+L  + +   A P Y      P    ++ 
Sbjct: 127 IGNRVVDLVEEGVDIALRFGR-IGDENLIVRRLQRVELTLCATPSYWARRGIPQMPDDMR 185

Query: 188 KHNLITF 194
            H+++T+
Sbjct: 186 WHDVLTY 192


>gi|206575369|ref|YP_002235608.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206570574|gb|ACI12203.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 295

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 140/286 (48%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT +G +  
Sbjct: 7   MQVFIRVAEAGSFVRAAETLSLPSSTVTSTIKNLEKYLQVRLLNRTTRRVSLTPEGLQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E T+  L + + +P G+LR+     +   ++  NLKEF   YPDI + + 
Sbjct: 67  AQCREILALVEHTEASLADLNRRPRGRLRVDMPGGIAHFIVMPNLKEFYSRYPDIYLMIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR  + I +S+L+ R L        A+P YL+    P S ++L 
Sbjct: 127 VSDRQVDLVQEGVDCVIRTGELI-NSTLVARPLGEFRWITCASPDYLREYGIPQSPEDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I +     +  ++  ++   +  +         VN     ++ C+ G G+A L + 
Sbjct: 186 HHRAIHYFSGQSRRTDELRFVKGTET-LSVSVSGQAAVNETGLYIKMCLEGFGLAQLAEN 244

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V ++     LV ++ D   PS  V   YP     +  ++AF ++I
Sbjct: 245 VVAEHLEKGTLVEVLADWQPPSVPVTLLYPHQRFLSPAVRAFADWI 290


>gi|167838388|ref|ZP_02465247.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 296

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 135/285 (47%), Gaps = 9/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A  +L +S S++ + I+ LE  +G++LF+R  R +TLT++G   H  
Sbjct: 9   AFVRTAETLSFVAAGRKLGVSASAVGKTIAKLERTLGVRLFHRTTRKVTLTDEGRHFHER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 +L   Q  + +S+  P G+LR++  + +G   L   L EF   YPD+++ L  +
Sbjct: 69  CHRALEELRDAQASVSQSAQTPRGRLRVSLPV-IGYRFLLPVLPEFKRRYPDVELDLDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D  IR    +  SSL+ R+L        A+P YL     P +++ELD H
Sbjct: 128 DRLVDVVEGGFDAVIR-SGALSDSSLMSRRLGPFSFLLCASPAYLAQAGAPRTLRELDAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +       ++ +  L     P   P + + +  N+  ++    + G GI  +PD++
Sbjct: 187 ACVRYRFPTTGKLQPWGLLPDGSEP---PNLHTAMTCNNMEALRAAVMSGFGIGYMPDFL 243

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +D   +  L  +++            +P   + + K++ F +F+
Sbjct: 244 ARDALADGALATVLDAYRIGPGQFSILWPSNRQLSPKVRVFVDFV 288


>gi|187479222|ref|YP_787247.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115423809|emb|CAJ50360.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 301

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 133/271 (49%), Gaps = 9/271 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF  AAE+  L++S ++RQI+ LE + G++L  R  R L LT+ G   +
Sbjct: 1   MQTFARVVELGSFAAAAERAGLARSVVTRQIAYLEEKYGVRLLNRTTRKLNLTDAGRAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L    + L+  S +P+G+LRI+  +  G   L   + ++L  YPD+ I L 
Sbjct: 61  ERIRPLLSELADIDLALRAQSSQPTGRLRISAPVSFGVLHLGPAVADYLQRYPDVVIDLD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  D  D A+R+  P+  SSL+ R L    +   AAP YL     P   + L 
Sbjct: 121 LNDRVVDLVQDGYDVAVRI-GPLTDSSLVARPLAPQTLQVCAAPSYLARHGTPAQPEALR 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +           +W+   D      RI+  ++ N+   +    + G GI L PD
Sbjct: 180 QHQCLHYS----YASGGTDWVFEKDGQTTLVRITPSMRANNGDVLRTAALAGHGIILQPD 235

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           +++ D+     LV ++ D   P  T+   YP
Sbjct: 236 FLIGDDLRAGRLVPVLPDYRRPVITMMMVYP 266


>gi|49083524|gb|AAT51054.1| PA3135 [synthetic construct]
          Length = 307

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 141/289 (48%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +F  V    SFT AA+ L + +S++SR+I+ LE  +G++L  R  R L LTE G  
Sbjct: 4   DDALIFTRVVEYHSFTQAAQSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEVGQA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++ H     +  + +    PSG LRI + I+ GQ  L   L +F+  YP I  +
Sbjct: 64  YYERCRQIMHDFAEAEQAVMQLQQAPSGLLRITSPIEFGQMFLASLLGDFMRQYPQITAE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D   +  D  I + +P + S+L+ R+L++      A+P YL     P S+ E
Sbjct: 124 VELASRSVDPLQEGVDIVIMVGQP-EDSTLVARRLLSTSRWLCASPDYLAAHGTPTSVAE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +    L+    + + W  + D    +  +SC   N+     +  V G+GIA LP
Sbjct: 183 LAGHRAV----LLSTDSQRY-WPLSGDSLPCQRVLSC---NNITFAREAVVAGAGIAALP 234

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             I  +   +  LVR++ DV  P   +Y  YP       K+KAF +F+ 
Sbjct: 235 ALICAESVHSGRLVRLLADVPLPVGELYAVYPSRRFQAMKVKAFLDFLI 283


>gi|85704667|ref|ZP_01035769.1| hypothetical protein ROS217_06294 [Roseovarius sp. 217]
 gi|85671075|gb|EAQ25934.1| hypothetical protein ROS217_06294 [Roseovarius sp. 217]
          Length = 302

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 141/293 (48%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT AAE L + +++++  I  LE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRAFVRVVETGNFTRAAESLRMPKATLTNLIQRLEKHLQTKLLNRTTRLVIVTTDGAFYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +++     L     +PSG+LR+  +       +  +L +F   YPDIQ+ + 
Sbjct: 67  ERAVQLVSEIDELDNSLTHRQTRPSGRLRVEMSGAFADWYVIPSLADFYQSYPDIQLDIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D   +  DCA+R  +P +  SLI R++  I +   AAP YL+N   P +  +L+
Sbjct: 127 VTDRTVDYVRENVDCALRAGEP-KDQSLIARRVSEIGLITCAAPSYLENHGTPSTPAQLE 185

Query: 188 KHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L         G L P      +   +++    + RI+   V SYL   +  + G GI
Sbjct: 186 TDHLCVNYFIAQTGSLKPFVFAQDDSEISIN---SKHRIAVNDVRSYL---RATISGQGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             LPD++ +D      LV ++ D    +  VY  YP     + K++ F +++ 
Sbjct: 240 GQLPDFMAEDEIAKGALVPVLSDWKAKTVPVYVVYPPNRHLSNKVRVFVDWLI 292


>gi|78062199|ref|YP_372107.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970084|gb|ABB11463.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 320

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 103/188 (54%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G +  
Sbjct: 26  LHVFMTVATAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 85

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
           R T   Y ++   + EL+++  +P+G LR+ T + L + L+    L  F   YP +++++
Sbjct: 86  RQTEPAYRQVMQARDELKDARSEPNGLLRV-TALPLARTLVIAPVLATFRERYPKVRLEI 144

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +N+ +DI+ D  D  IRL   +Q   +  R    +     A+P YL     P SI +L
Sbjct: 145 RYENELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPGYLARYDAPASIADL 204

Query: 187 DKHNLITF 194
           ++H  I F
Sbjct: 205 ERHACIRF 212


>gi|162454395|ref|YP_001616762.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161164977|emb|CAN96282.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
          Length = 305

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 130/253 (51%), Gaps = 10/253 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A  GSFT AA +L ++ S++SR+I+ LE EVG++LF+R  R +TL+++G       
Sbjct: 10  FVEAAELGSFTLAARRLRVTPSAVSRRITQLEGEVGVRLFHRTTRAVTLSDEGRAFFERA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +L+  Q        +P+G LR+     +G++++   L  F   YPD+ ++L L +
Sbjct: 70  RAALRELDDAQRATSGLRDRPAGLLRVEAPTVIGRHVIVPVLARFAERYPDVDVELALRD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              D++ +  D A+RL   +  S LI R +    M    AP YL+    P ++ +L++H 
Sbjct: 130 DPADLASERIDVAVRL-GTLPDSGLIARPVGRSRMLVCGAPGYLREHGRPRTVDDLERHV 188

Query: 191 LITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            + +   G L+P  + D   +    R I   R   + V+   ++++  + G+G+A L D+
Sbjct: 189 RLGYALHGRLLPWRLRDGVKV----REIAPTR--RIVVDDGEALIELAIEGAGLAWLCDF 242

Query: 248 IVKDNPNLVRIME 260
           ++       +++E
Sbjct: 243 MLARAGKARKLVE 255


>gi|261253365|ref|ZP_05945938.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
 gi|260936756|gb|EEX92745.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
          Length = 303

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 144/284 (50%), Gaps = 20/284 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V   GSFTHAAE L +++S++SR+++ LE  +G++L  R  R L LT +
Sbjct: 1   MDLNGVNVFVQVVDCGSFTHAAESLRMTKSTVSRKLAELEQHLGVRLITRSTRSLVLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K ++   ++   +   ++E+  +     G L I   ++LG  +L   + +FL+ YP++
Sbjct: 61  GEKFYQSGLQMLEVMNQAELEVSANQDLVRGPLNIVLPVELGHQVLGSYINQFLMQYPNV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L N+++DI  +  D   ++ K ++ S+L+ R L        A+P YL+     + 
Sbjct: 121 TMNLELSNREVDIVGEGIDLYAQIGK-LEDSNLVSRYLTASKRALVASPDYLEEY--GMI 177

Query: 183 IQELD---KHNLITFGD---LIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
              LD    H ++   +    +PK     D +    +D P        L+VN+  + ++ 
Sbjct: 178 EHHLDLIAPHQMVEVSNKAVRLPKWHLQLDDDSSYQIDLPYR------LRVNTITACLKA 231

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + G GIA+LP++I +++     LVR++ +   P   V   Y +
Sbjct: 232 SLDGLGIAVLPEFICREHFATGRLVRLLPEYRMPEVEVSLVYAD 275


>gi|33600975|ref|NP_888535.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
 gi|33575410|emb|CAE32487.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
          Length = 302

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 137/290 (47%), Gaps = 13/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D+ RVF  VA  GSF  AA  L L ++S+S  +  LE +VG +L +R  R + LT  G+
Sbjct: 4   FDQYRVFAQVAEMGSFIKAAHALELPRASVSAAVQQLEGQVGARLLHRTTRQVRLTADGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +  ++E      Q S  + +G+L I     + + L+   L   L  +P +Q+
Sbjct: 64  QLLERIRPLLAEVEDIDQLFQASQRQAAGRLNIDVPSRIARRLVAPALPALLRRHPRLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+  +  DCA+R+   + SSSL+ R L ++ +   A+P YL+    P    
Sbjct: 124 ALGSGDRAIDLVREGVDCAVRI-GVLHSSSLVVRPLGSLALINCASPAYLREHGAPGHPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239
           EL   +  T G   P+      W  AT   P G   +    S + VN+  S +  C+ G 
Sbjct: 183 ELAAGHW-TVGYASPQTGRALPWEYAT---PRGGTSLVEAASRVVVNNAESYIACCLAGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+  +P Y V+   D   LV +M D    S  V   YP   + + +L  F
Sbjct: 239 GLIQIPRYDVQHLLDGGQLVEVMPDQRAASMPVALLYPHRRQRSRRLAVF 288


>gi|209886612|ref|YP_002290469.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
 gi|209874808|gb|ACI94604.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
          Length = 298

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 135/264 (51%), Gaps = 16/264 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  RV   VAR+G+   AA +L + QS++SR+++ +E   G  +F R+ +GL+LT  G+
Sbjct: 13  WDHFRVVLEVARTGTLVAAARRLGVDQSTVSRRLAQVEFSTGGTIFKRNRQGLSLTPLGN 72

Query: 65  KL-HRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++  RV      K+E + +E+Q  + K    SG++ IA+   +G  L+  +LK   + YP
Sbjct: 73  EIFSRV-----EKMEASLLEIQGITSKGTIASGRVTIASMEGIGSLLIARSLKALSVAYP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ L+  +  +DIS   AD  +   +P  + SL+ +K+  +  H YA+  Y+   R  
Sbjct: 128 EIEVHLVTTSNHVDISKREADIFVSFFEP-ATGSLVTQKIADVCFHLYASDEYI-GGRTI 185

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +   +L     I + D  P  +    WL   +  I  P+I   +  S  S M     G G
Sbjct: 186 MLPTDLQGETFIGYID-DPIFLPSARWL---EEFIENPKIG-FRATSMFSQMNAAQEGLG 240

Query: 241 IALLPDYIVKDNPNLVRIMEDVIT 264
           I +LP+Y   +   L +I+ D  T
Sbjct: 241 IVMLPNYAQAELSGLRKIVPDRFT 264


>gi|190574827|ref|YP_001972672.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190012749|emb|CAQ46378.1| putative transcriptional regulator-LysR family [Stenotrophomonas
           maltophilia K279a]
          Length = 301

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 139/294 (47%), Gaps = 16/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R F  +   G    AAE L +S + +S+Q+  LE  +G+ L  R  R ++LTE G 
Sbjct: 4   FNLMRAFRRIVERGGLARAAEDLGMSPAGLSKQLRTLEAHLGVVLLQRTTRRMSLTETGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +  +L+  +  + E     +G+LR+        + L   L  FL  +P + +
Sbjct: 64  AYYRECCRLLDELDALERGIAEQRGDVAGRLRVNAPQSFALSTLSPLLPRFLQQHPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+++++ +D   +  D ++RLR  +  S L+ R+L ++     AAP YL+    P ++ 
Sbjct: 124 DLVMEDRLLDAVGEGFDVSLRLRAELDDSRLVARRLASLQQVLCAAPSYLRQHPAPQAVD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241
           +L  H+++ +       + D      +  P G+  I+    + VN+ L +    V G GI
Sbjct: 184 DLQAHSVLAY------SLSDSPGSWPLLGPDGQVTITLPARVTVNNSLLLRDLLVAGMGI 237

Query: 242 ALLPDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++    P L R     ++ D   P   V+  YP +     K++AF +F+
Sbjct: 238 GALPSFLAA--PALARGELQQVLPDHRYPPRFVHAVYPTSRHLQPKVRAFIDFL 289


>gi|163749091|ref|ZP_02156341.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161331161|gb|EDQ02050.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 303

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 145/294 (49%), Gaps = 17/294 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +  + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGIPKSTISRKVARLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    +  ++E  +  ++ ++   SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCISIRDEIEAAKATIENTNNHVSGSLRIAIPVSFSQELIANLCSSFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + ++ +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDSEVSLVGEGYDIAIKY-GPLQSSDLVARLLFERKPILVASPGYLKANGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           QEL  H+ I  G      + P    +   + +  R +        +VNS + + +     
Sbjct: 182 QELANHHGILLGTSRSAPIWPLGKGNRKTMVSFKRKV--------RVNSAVMVKKLVQDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GIA+L + + K+   + +LV I+++    +F +Y  Y    +    +  F +F
Sbjct: 234 FGIAMLSNSVCKNELASGSLVPILQEWPIEAFKIYGVYSSRRQLATNISVFLDF 287


>gi|83719370|ref|YP_440683.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167579354|ref|ZP_02372228.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167617454|ref|ZP_02386085.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257140670|ref|ZP_05588932.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83653195|gb|ABC37258.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 351

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 135/286 (47%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGTPTHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|87120162|ref|ZP_01076058.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86164864|gb|EAQ66133.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 299

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 143/289 (49%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  V   GS + A++  ++  SSISRQI  LE E+ ++L  R  R + LTE G K 
Sbjct: 6   RLHYFNAVVELGSISAASQLYNVQPSSISRQIIALEKELSVRLLSRTTRNIGLTEAGRKY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +  +L+  +  + +    P G LR+  T+  G++++   +  FL  YP I+++L
Sbjct: 66  YEYSQRIVAELDEAKRVVNDLQESPKGLLRLNLTVGFGESVVLPLIPLFLEQYPAIKVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  K +D+  D  D AIR  K ++ SSLI  KL+  +    A+PHYL    E +S  +L
Sbjct: 126 DLTEKVVDLVEDNIDIAIRSGK-LEDSSLIATKLMDNNFIPCASPHYLSKHPEIVSPDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            KH  I +G       + +  LA   + +   +   + VNS     Q  +  +GIAL+P 
Sbjct: 185 IKHQCIHYGY---SGWQSWYLLANKKQSLNLEK--TISVNSVNGQKQLILNHAGIALIPQ 239

Query: 247 YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + VK       +++  + P +T  F   E L +T  +   R FI  K R
Sbjct: 240 WAVKSELEEKSLLQ--LLPQYT--FSPNEHLTSTYGIYLNRQFIAPKIR 284


>gi|260778146|ref|ZP_05887039.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606159|gb|EEX32444.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 301

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 105/187 (56%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LTE G   +
Sbjct: 10  IRSFVLIAQLGNFTKAAEALDVSRSHVSRQISSLENQMGVTLLIRTTRTLKLTEAGKAFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +  H ++   +   +   K  G+++I      LG++L+     EF+ ++PD+ I L
Sbjct: 70  QQCEKALHNIDQALLAAVDDVEKVQGEIKINCVGGYLGEDLIAQIATEFMHVHPDVSINL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+ K ++ S  + RKL+ I M   A+P YLK   +P   +EL
Sbjct: 130 DFSSHRVDLIEDDFDIAFRMGK-LEDSGFVARKLLDIKMGTLASPSYLKRYGQPNHPKEL 188

Query: 187 DKHNLIT 193
            +H+ +T
Sbjct: 189 TQHHCLT 195


>gi|213969939|ref|ZP_03398072.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301382212|ref|ZP_07230630.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061331|ref|ZP_07252872.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|213925264|gb|EEB58826.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 301

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 135/300 (45%), Gaps = 17/300 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+  +
Sbjct: 7   MRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGTAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   EV   +  ++   +++  +P+G LRI   +  G  LL   L  F   +PD+++ L+
Sbjct: 67  QRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFPDVKLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D AIRL    QSS LI R L    +   A P YL     P   ++L 
Sbjct: 127 LTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAEPDYLARHSAPTRPEDLR 186

Query: 188 KHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240
            HN + F    P   E       W  T   P GE  +     +  N+   + Q    G G
Sbjct: 187 AHNCLAFA--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAARAGMG 242

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           + +LPD +V+ +     LV ++ D   P   +   Y   +++  +L   R+F+      W
Sbjct: 243 VVMLPDALVQRDLQEGRLVALLPDYRLPRRPMNLLY---VQDRYRLPKLRSFVEFATAQW 299


>gi|296160862|ref|ZP_06843675.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295888954|gb|EFG68759.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 312

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 148/289 (51%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +LE  +  +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQVLAELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R++ T H+   A+P YLK    P ++ +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARQIATAHLVLCASPAYLKRHGTPKTVADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
            +HN + +  +    +      A+        R++   + ++L   +  VL G+GIA+L 
Sbjct: 187 ARHNYLQYAGVSALEIAPATGDAS-----SRVRLTGNLIVNHLEAQRVIVLQGAGIAMLG 241

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
             ++ D+     LV ++ D + P    ++  Y      + K+++F +F+
Sbjct: 242 TEVIGDDLAAGRLVPLLVDDVPPRELPIHVVYASRRHLSAKVRSFVDFL 290


>gi|87120784|ref|ZP_01076677.1| Transcriptional Regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86164012|gb|EAQ65284.1| Transcriptional Regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 298

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 125/237 (52%), Gaps = 4/237 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA   SFT AA+ L+L ++++S  I  LE  + ++L  R  R ++LT +G      
Sbjct: 9   VFATVAEQLSFTKAADILNLPRATVSTSIQSLEARLRVQLLNRTTRRVSLTLEGQVFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  +++  +   Q+S+ K  G+++I   ++  + ++   L EF   +P+I+I L   
Sbjct: 69  CQTVLTEIDDLEKSFQQSTGKLDGRIKIDMPVNFAREIVLPRLFEFNNKFPEIEIDLSSH 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID+  +  D  IR R     S+ + RKL+ + +  YA+P YLK    P ++ +L  H
Sbjct: 129 DTFIDVVGESVDLVIR-RGDYSDSNFVVRKLMNVSIGNYASPAYLKERGVPKNLDDLKHH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
           +L+T+   +     +FN+L   DR + +  + + + VNS +S    C+ G GIA LP
Sbjct: 188 SLVTYSPSLGNKTGNFNYL--YDREVKKVSMRTSINVNSTVSYTDACLGGLGIAQLP 242


>gi|186470638|ref|YP_001861956.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196947|gb|ACC74910.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 324

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAEQL + +++++  I  LE  +G++L  R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAEQLGMPRATVTTTIQNLEAVLGVRLMNRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +  T    Q  + KPSG LR+     LG++L+   L+ F   YPDI + L 
Sbjct: 67  EHCIRIITDIAETDASFQAGNRKPSGALRVHMPNSLGRHLVIPALQSFHQRYPDIALDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR    ++ SS++ R++ T+     A+P YL    EP SI +L 
Sbjct: 127 LSDRPVDPVEEGIDCMIRAGA-LEDSSMVARRIGTLKRVTCASPDYLVRFGEPQSIDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F   +        W+  VD +PI       + VN   + ++ C +  G  L+  
Sbjct: 186 MHHAVNF--RVAHGTRPMPWIILVDGKPIEVRMNGVVTVNDSEAYVK-CGM-EGFGLIQP 241

Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            +    P L       + P+F      +   YP     + K++ F +++
Sbjct: 242 MLFMVAPQLRDGSLKEVLPAFKPKPKPISIVYPNNRHLSAKVRVFADWV 290


>gi|110636229|ref|YP_676437.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110287213|gb|ABG65272.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 295

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 128/276 (46%), Gaps = 11/276 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR  SFT AA +L +S S++S+ +  LE  +GI+L  R  R +  TE G
Sbjct: 3   NLNDLAAFGAVARERSFTRAAAKLRVSPSALSQTVKNLEERLGIRLLTRTTRSVAPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +  + +++     L E   KP+G +RI        +LLQ  LK FL  YPDIQ
Sbjct: 63  ERLLRTITPRFEEIDAELAALSELRDKPAGTVRITAGEHPAISLLQPALKRFLPEYPDIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+D    DI  +  D  +R+ + +    +       + M   A+P Y      P + 
Sbjct: 123 VEIIIDYGLTDIVAEGFDAGVRMGEQVAKDMIAVPIGPDMRMAVVASPAYFDQHPIPKTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q++  H  I     +P     F+W L    R +       L  NS    +   + G G+A
Sbjct: 183 QDMTVHKCIN--TRLPTYGGVFSWGLEKKGREVKVRGEGQLIFNSLAMRLSSALDGLGVA 240

Query: 243 LLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCY 273
            +P+     YI   +  L+R++ED   P F  Y  Y
Sbjct: 241 YMPEDQALPYIA--DGRLIRVLED-WCPGFPGYHLY 273


>gi|167583711|ref|ZP_02376099.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 307

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 152/310 (49%), Gaps = 43/310 (13%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE
Sbjct: 4   SPNLDDLRVFSVVVRLTSFSAAAEQLGVSPAYVSKRVAQLEAQLGTRLLHRSTRRVAVTE 63

Query: 62  QGSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            G ++     ++  +V H +E    ++  +   P G LRI+++   G++++   L  F  
Sbjct: 64  AGERVLARAEKILDDVDHLVE----DVSTTRTVPRGTLRISSSFGFGRHVVAPALLAFTE 119

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP + ++L L ++ +D++ +  D  IR+   I +  LI R+L + H    A+P YL   
Sbjct: 120 RYPQLNVRLDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIARRLASNHRVLCASPAYLARR 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI 231
             P ++ +L  H  +   +               D P+G  R++       ++V   LS 
Sbjct: 179 GTPRTLADLSSHECLAIKER--------------DHPLGVWRMNVRGETQTVKVGGALST 224

Query: 232 ------MQYCVLGSGIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNT 280
                 +Q+ + G GI L    I +  P      L R++ D   P+  V+  YPE +  +
Sbjct: 225 NHGEVAVQWALAGRGIVL--RSIWEAGPLIARGALCRVLPDATQPA-NVWAVYPERVATS 281

Query: 281 GKLKAFRNFI 290
            K++   +F+
Sbjct: 282 AKVRVCVDFL 291


>gi|186471394|ref|YP_001862712.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197703|gb|ACC75666.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 338

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 132/285 (46%), Gaps = 9/285 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  GSF  A ++L + +SS+SR +  LE ++  +LF R  R  +LT +G       
Sbjct: 31  FIAVANEGSFARAGDRLGIGRSSVSRNVQKLEAQLDTRLFLRTTRSTSLTREGELFFENC 90

Query: 71  SEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                ++     E++E  S  P G+LRI +T   G+ ++   L+ F   YPDI ++L+L+
Sbjct: 91  QAGVERIVQALEEMRELRSGPPRGRLRIYSTPGFGRKIVAPLLRGFHAQYPDIALELLLN 150

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D + D  D + R  + ++ S ++ R+L+ + M   AAP Y++    P  + EL  H
Sbjct: 151 DRPADFTADRIDVSFREGR-MEDSEIVARQLIPMQMIVCAAPSYVQAHGLPRHVDELAHH 209

Query: 190 NLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             I F     +  E   W   VD  P+     +    N    I+Q  + G G+A LP Y 
Sbjct: 210 GCINFRTASGRLKE---WEFRVDGLPLRHHPHASHTFNDPDLILQSVLDGQGLAQLPGYQ 266

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V D      LV  +          Y CY        +++ F +++
Sbjct: 267 VCDLLGEGRLVSCLTQYAPDDSGHYICYLSRKHLPARIRVFVDYM 311


>gi|293396447|ref|ZP_06640724.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291421049|gb|EFE94301.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 302

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 138/284 (48%), Gaps = 14/284 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F    ++GS+T AA  L LS+S+I + I  LET +G++L  R  R L+LT++G  +   
Sbjct: 11  AFVAAVKAGSYTQAAGSLGLSRSAIGKSIVRLETRMGVRLLNRTTRSLSLTDEGRVMFDR 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   LE     +    VKP+G LR++  +  GQ  +   L  +L  +P+++ ++   
Sbjct: 71  CRQILEDLEEVDATMAMRRVKPTGTLRLSAPLSFGQRHILPILDIYLKKWPELRAEVSFS 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIR+ +P   S ++ R + +  +   A+P YL +   P + ++L  H
Sbjct: 131 DRFVDLIEEGFDIAIRIGEPRDDSRILTRTIASQRIVTCASPDYLSSRGVPQTPEQLTHH 190

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + I     +    +   W  T    +    G  R   L ++S  ++ +  + G GI  LP
Sbjct: 191 DTI----FLLSAEKRRCWRFTTPEGVFVYDGPGR---LNLDSSEAMRESAIAGFGIVHLP 243

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            Y++ D+     L+ ++E    P   +   YP     + +++AF
Sbjct: 244 TYLLADDLRRGKLIPVLEKYPFPPEPIRIIYPSKRHLSPRIRAF 287


>gi|91776925|ref|YP_546681.1| LysR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710912|gb|ABE50840.1| transcriptional regulator, LysR family [Methylobacillus flagellatus
           KT]
          Length = 298

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 140/303 (46%), Gaps = 18/303 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+++  VF  V ++GSF+ AA QL L  S++S +++ LE  +G+ L  R  R L LTE 
Sbjct: 1   MDFNEAAVFVKVVQAGSFSAAARQLQLPTSTVSTRVARLEQRLGVTLLQRTTRRLNLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       S     L   +  L  +  KP G+LR+    DLG +LL G ++     +P +
Sbjct: 61  GRAYFAHASIGLGYLLEAEAALDAARQKPQGRLRVTAPADLGDSLLAGLVQRLQQQHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++LIL ++ +D+  +  D AIR  + ++ SSLI + L       +A+  YL +      
Sbjct: 121 EVELILTDRYMDLVAEGIDAAIRTGE-LRDSSLIAKPLGMARWAMFASRAYLASSPRLQQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCVL 237
            Q+L++H  + F       M    W  T+ R  GE     P       NS   +    + 
Sbjct: 180 PQDLNQHRCLQF-----SPMGRDGW--TLRR--GEDIMTIPLTGSTMANSIGIVRNMALN 230

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+ALLP YI K      +L R++      +  V+  YP       KL A  +    + 
Sbjct: 231 GQGVALLPTYICKTELAIGSLERVLPQWQAQADPVHLVYPRQRFMPPKLLALIDMAQAEL 290

Query: 295 RDW 297
           R W
Sbjct: 291 RPW 293


>gi|134291777|ref|YP_001115546.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134966|gb|ABO59291.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 301

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 136/298 (45%), Gaps = 10/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  LF R  R +TL++ G 
Sbjct: 4   FSALRAFVEVAEAGGFSSAGRRLELAASSVVRAVDALEASLGTVLFNRTTRQVTLSDAGV 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V  +L      + +   +PSG LR++  +  G   +  ++   L  +P + I
Sbjct: 64  VYYARAKRVLEELADADALVADRGSEPSGPLRVSVPVAYGLRRIAPHVAALLARHPKLDI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+     D AIRL     S+ ++ R L T   H  A+P YL     P +  
Sbjct: 124 DLQLTDERVDLVTSRIDVAIRLGDAAPSADVVARPLGTFRRHVVASPGYLDAHGTPATPG 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  + F   + +    F       + +   R   L+ N    + +  + G+GIALL
Sbjct: 184 DLVDHACLRFHFGVDQQAWTFVGAQGTTQVVVAGR---LKSNHSEVLCEAALDGAGIALL 240

Query: 245 PDYIVK---DNPNLVRIMEDV-ITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           PD++V    +   L R+ +D  +TP      +   Y    + + ++ AF +F+   AR
Sbjct: 241 PDWLVDADVEAGRLRRLFDDYDVTPGAARAVITALYLPNQRGSKRVAAFIDFVAALAR 298


>gi|114046062|ref|YP_736612.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113887504|gb|ABI41555.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 330

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  GS 
Sbjct: 4   EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  +L+ T  E+     + SG LRI        N+L   +  F+ L+P + ++
Sbjct: 64  FYQRSLNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMNVLMRAIFRFMDLHPKLTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I   + +D+  +  D A  +   + +  L+ R + T  +  YA+P YL     P + QE
Sbjct: 124 VINSAEAVDMVKNNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPDYLAKHGTPKTSQE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241
           ++ HN+  F     K   +  W       IGE +   ++     NS    +++ + G GI
Sbjct: 184 IESHNVSLFRLSNGKIFNEL-W-------IGEEQAVRVRGNFCSNSVQVAVEFALQGRGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P  +V +      LV ++ ++       Y  YP     +   + F +FI
Sbjct: 236 VYAPTEVVSEYVTAGQLVTLLPEIDPHPGECYLAYPSRRYVSLASRRFIDFI 287


>gi|15598331|ref|NP_251825.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107102684|ref|ZP_01366602.1| hypothetical protein PaerPA_01003749 [Pseudomonas aeruginosa PACS2]
 gi|116051131|ref|YP_790038.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890664|ref|YP_002439528.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254236104|ref|ZP_04929427.1| hypothetical protein PACG_02064 [Pseudomonas aeruginosa C3719]
 gi|254241829|ref|ZP_04935151.1| hypothetical protein PA2G_02546 [Pseudomonas aeruginosa 2192]
 gi|296388363|ref|ZP_06877838.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313108458|ref|ZP_07794462.1| putative transcriptional activator [Pseudomonas aeruginosa 39016]
 gi|9949248|gb|AAG06523.1|AE004737_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115586352|gb|ABJ12367.1| putative transcriptional activator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168035|gb|EAZ53546.1| hypothetical protein PACG_02064 [Pseudomonas aeruginosa C3719]
 gi|126195207|gb|EAZ59270.1| hypothetical protein PA2G_02546 [Pseudomonas aeruginosa 2192]
 gi|218770887|emb|CAW26652.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310880964|gb|EFQ39558.1| putative transcriptional activator [Pseudomonas aeruginosa 39016]
          Length = 306

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 141/289 (48%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +F  V    SFT AA+ L + +S++SR+I+ LE  +G++L  R  R L LTE G  
Sbjct: 4   DDALIFTRVVEYHSFTQAAQSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEVGQA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++ H     +  + +    PSG LRI + I+ GQ  L   L +F+  YP I  +
Sbjct: 64  YYERCRQIMHDFAEAEQAVMQLQQAPSGLLRITSPIEFGQMFLASLLGDFMRQYPQITAE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D   +  D  I + +P + S+L+ R+L++      A+P YL     P S+ E
Sbjct: 124 VELASRSVDPLQEGVDIVIMVGQP-EDSTLVARRLLSTSRWLCASPDYLAAHGTPTSVAE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +    L+    + + W  + D    +  +SC   N+     +  V G+GIA LP
Sbjct: 183 LAGHRAV----LLSTDSQRY-WPLSGDSLPCQRVLSC---NNITFAREAVVAGAGIAALP 234

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             I  +   +  LVR++ DV  P   +Y  YP       K+KAF +F+ 
Sbjct: 235 ALICAESVHSGRLVRLLADVPLPVGELYAVYPSRRFQAMKVKAFLDFLI 283


>gi|221202151|ref|ZP_03575186.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221208788|ref|ZP_03581787.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221171420|gb|EEE03868.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221177945|gb|EEE10357.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 294

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 132/284 (46%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G   +  
Sbjct: 9   AFVRAADALSFVAAGRTLGISASAVGKTIARLEQSLGVRLFNRTTRRITLTDEGRHFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L   +  +  S+ +P GKLR++  + +G   L   L EF   YPD+++ L  +
Sbjct: 69  CQRILEDLRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVELDLDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D  IR   P+  SSL+ R+L        A P YL     P +  +L+ H
Sbjct: 128 DRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPHAPCDLEAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + +    P   +  +W    D        + +  N+  ++    + G GI  +PD++ 
Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   +   LV +++D           +P + + + KL+ F +F+
Sbjct: 245 RGALERGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288


>gi|264678250|ref|YP_003278157.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262208763|gb|ACY32861.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 308

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 142/289 (49%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V  +G+FT AA+ L + ++S+++ +  LE  + +KL  R  R +T+T  G+  +
Sbjct: 7   MRIFARVVEAGTFTRAADSLQMPKASVTKNVQALEERLRVKLLNRTTRRVTVTADGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +  +  + ++   P G+LR+     + + L+  +L EF   YP+IQI L 
Sbjct: 67  DRAVRLLADFDDLEASVSQARTTPRGRLRVDVGTTVARLLIIPHLSEFQSRYPEIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR  + +   SL+ R++  +     AAP YL+    P   ++L+
Sbjct: 127 VSDRTVDLISDNVDCVIRGGE-LADQSLVARRIGNLEFITVAAPEYLQRHGVPQHPRDLE 185

Query: 188 K--HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
               N+I F  +  +    +F+    V        +   + N+Y+S +   + G GI  L
Sbjct: 186 SGHRNVIYFSPVSARRYPLEFHKGGEVIEIASPAHLGINEGNAYISAI---LAGQGIGQL 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + +    ++  L R++ED   P   +Y  YP     + K++AF +++
Sbjct: 243 SRFQIHKYLESGQLQRVLEDWKHPLLPIYVVYPPNSHLSAKVRAFVDWV 291


>gi|325922885|ref|ZP_08184605.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325546639|gb|EGD17773.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 344

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MIHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRV-GALPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239
           L   EL  H  +            F W  +    + +  ++ L V +  + +   VL G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVKD--NPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K      LV R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|171320095|ref|ZP_02909162.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171094661|gb|EDT39708.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 305

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 136/291 (46%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   
Sbjct: 6   SMRVFTRIVETGSFTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRISLTEDGQAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V  ++E  +  + ++   P G+L++     + + ++   L EFL  +P+I I+L
Sbjct: 66  YERCVGVLREIEDMEAAVSQARNVPRGRLKVNLPPAMAKQIMVPALPEFLAAHPNISIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ ID+  +  DC +R+   +  S +I R++ ++     AAP YL  C  P ++ EL
Sbjct: 126 GVTDRQIDLVGEGVDCVVRI-GALDDSGMIARRIGSLTTCTCAAPAYLDRCGAPETVDEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
            +H  +    +         W   VD   GE RI      + VN   + ++  V G G+ 
Sbjct: 185 AQH--VAISHISADTGRPRPWDYVVD---GETRIVQMCGTVAVNDADTYIECGVAGIGLI 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               Y+V+    +  L  ++ D   P   +   YP       KLK F +++
Sbjct: 240 KTSLYLVEPYLKSGRLREVLTDFNAPPRPISILYPPNRHTPVKLKIFVDWL 290


>gi|209551924|ref|YP_002283841.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537680|gb|ACI57615.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 301

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R LTLTE G+ 
Sbjct: 5   EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKSLGGVLLHRTTRKLTLTEDGAV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    ++ E     SG +RIA  +  G+  L   L  FL  +PDI++ 
Sbjct: 65  FLERAGRIVREIDEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLADHPDIELT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D++ +D + D  D  IR   PI  S L+  KL        A+P YL     P S+ +
Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPIADSRLVAWKLAPSRRLLCASPDYLARQGMPSSLDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H  I + +   + + D+ +       +   +++ L +N+   +    + G GIALLP
Sbjct: 184 LNSHRGIFYTN---RGVADWRFQTPEGAVVVRAQLA-LGINNGDMLRDAAIAGLGIALLP 239

Query: 246 DYIVKDNPNLVRIME-DVI--TPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +I +      R+ E DV     +  +Y  +P     + KL+A  + +
Sbjct: 240 SFIARPAIREGRLAEIDVGHQPEAEFIYMAHPAGRNPSAKLRAIADHL 287


>gi|222084933|ref|YP_002543462.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722381|gb|ACM25537.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 293

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 137/290 (47%), Gaps = 11/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +R+F  VAR+G    A+++L ++ +++SR+++ LE  +  +L  R   G  LT +
Sbjct: 1   MDWDDVRMFLAVARTGQILAASKRLGVNHATLSRRVTTLEERLKTRLLVRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  +       +G +RI      G + L   L   +  YP++
Sbjct: 61  GEIFLHAAERMETEMLRAQASVGHLDSAITGTVRIGAPDGFGVSFLAPRLGRLIARYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P Q   L+  KL    +  YA+  YL     P S
Sbjct: 121 RIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYTLGLYASKAYLDKAGLPDS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ L  H  I +       +ED  + A+++    I     +  ++++ +   +    G+G
Sbjct: 180 VEALKLHPRIGY-------VEDLLFTASLNFSGEIMRSWDASFEISTSIGQTEAVRSGAG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +L DYI +  P L RI+ D I+     +  Y E+ ++  +++   +F+
Sbjct: 233 IGILHDYIARQYPELTRILPD-ISIKRAYWTTYHESARDLVRVRTVADFL 281


>gi|254254663|ref|ZP_04947980.1| regulatory protein LysR [Burkholderia dolosa AUO158]
 gi|124899308|gb|EAY71151.1| regulatory protein LysR [Burkholderia dolosa AUO158]
          Length = 319

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 10/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R +  V R GS + AA  L L+Q ++ R I  LE  +G+ LF R   GL  T    
Sbjct: 31  WELYRSYLGVLREGSLSGAARALGLAQPTVGRHIEALEKSLGLDLFTRSQSGLLPTPAAL 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R  +E         +   +S     G +RI+ +  +G  +L   + +    YP+++I
Sbjct: 91  EL-RPYAEAMGSSAAALMRAADSQGGVKGTVRISASEVIGAEVLPPIVADLQATYPELRI 149

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+  D+ +  AD A+R+ +P Q ++L+ R++  + +  YA   YL     P +  
Sbjct: 150 ELALTNRVHDLLLREADIAVRMTRP-QQNALLVRRVGVLEVGLYAHRAYLARRGTPQAPS 208

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GSGIA 242
           EL +H LI F +  P     F   A    P+ E R       S   + Q  ++  G+GI 
Sbjct: 209 ELAQHALIGFDEETP-----FLRAAASTLPV-EWRRHAFTARSDSDLAQLALIRAGAGIG 262

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +    + + +P LVR++ DV +     +    E L+++ + KA  + +F
Sbjct: 263 VCQVALARRDPQLVRVLPDVFSFPLETWVTMHEDLRHSARCKATFDALF 311


>gi|170733950|ref|YP_001765897.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817192|gb|ACA91775.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 294

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 11/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S+I ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              V  +++  + EL +S   P G+LR++  TI     LL   L +F+  YP+I++ +  
Sbjct: 69  CRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIG---TLLLPVLADFMAAYPEIELDIDF 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  +  D  +R   P   S L  R L     H  A+P YL+    P +  +L +
Sbjct: 126 SDRIVDVIDEGFDVVLRTGHPTD-SRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLAQ 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  + +    P   +   W     R    P +    V N+  + + + + G GIA LP++
Sbjct: 185 HRCLHY--RFPSSGKLEIWPLRAPRVGTPPEVPVSMVSNNAETRLCFALRGLGIACLPEF 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+D   +  L  +++D +      Y  +P       KL+AF +++
Sbjct: 243 FVRDTLADGRLRAVLDDHVASRTPFYVLWPSGRHPLPKLRAFVDYM 288


>gi|15597252|ref|NP_250746.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9948064|gb|AAG05444.1|AE004632_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 300

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 104/195 (53%), Gaps = 1/195 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +++   VA + SFT AA  L L+QS +SR I  LE E+G++L +R  R ++LT  
Sbjct: 1   MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  +LE  +  L +    PSG L+I T   LG+ ++   L+E    YP +
Sbjct: 61  GQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRCYPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI+  + ++ +D++ +  D A+RL + +    LI R L  +     A+P YL+    P  
Sbjct: 121 QIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRGHGTPER 179

Query: 183 IQELDKHNLITFGDL 197
           +++L  HN  T  DL
Sbjct: 180 LEQLAGHNCPTVRDL 194


>gi|254422904|ref|ZP_05036622.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335]
 gi|196190393|gb|EDX85357.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335]
          Length = 302

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 142/297 (47%), Gaps = 14/297 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V     F  A   L LS+S +++ ++ LE ++ ++L  R  R ++ T+ G  
Sbjct: 5   ESMRTFVEVVNHSGFAAAGRHLGLSRSVVNKLVAQLEQDLDVQLLQRTTRRVSPTDMGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++  +++  ++ + +  ++P G LRI   +  G   L   + +F+  YPDI++Q
Sbjct: 65  YYERCVDILAEVKAAELSVTQMQMQPKGTLRINAPMSFGTMHLAEAIAQFMYQYPDIKVQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D  +R+   ++  +LI  K+  I     AAP+YLK    P  +++
Sbjct: 125 MTLSDRFVDLIEEGFDVTLRIAAAVEEEALITHKIAPIRRVLCAAPNYLKAHGTPTRLED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIM-QYCVLGSGIAL 243
           L +H+ + +G L         W L   D+    P I C   ++   ++ +  + G GIAL
Sbjct: 185 LKQHHCLHYGHLATGS----KWRLVGPDKTYTIP-IKCRGYSNNGEVLRESAIAGVGIAL 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP +I+ D   +  L  I+ +      T   CY      + K++    F+    +DW
Sbjct: 240 LPTFIIGDALRSNELSIILPNYRPLELTARLCYATNRHLSTKIQLLTTFL----QDW 292


>gi|167579946|ref|ZP_02372820.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167618023|ref|ZP_02386654.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 324

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G +L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGARLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T    Q    KPSG LR+     LG+ L+   L  F   YPD+ + L 
Sbjct: 67  EHCIKIITEIAETDASFQVGKRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPDVVLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP+ I EL 
Sbjct: 127 LSDRPVDPVEEGIDCMIRI-GPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPMEIAELA 185

Query: 188 KHNLITF 194
            H+ + F
Sbjct: 186 AHHAVNF 192


>gi|332284927|ref|YP_004416838.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428880|gb|AEC20214.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 306

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 17/294 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            DWD LR F  VAR+   + AA +L +  S++SR+I  LE E+G  LF +  + G TLTE
Sbjct: 2   LDWDGLRYFLEVARTQRVSAAALRLGVRHSTVSRRIHALELELGTLLFDKSKSTGFTLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G++      ++   L T + E+   S   SG LR+ +T   G  +L   + +F   +P 
Sbjct: 62  EGNRFFAYAEQIEGTLITAREEISGQSQTLSGHLRVGSTEGFGNYVLAPLMTDFQRRFPA 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + I +S   AD AI L +P Q    +  KL+   +  Y +  Y+  C   L
Sbjct: 122 ITLDIMPVPRFISLSKREADIAISLERP-QRGPYLCTKLLDYSLKLYGSTEYIARCAPIL 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              +L +H  I +       +E+    + L  +D  +   R+   +  S ++     + G
Sbjct: 181 KKTDLAEHTFIGY-------VEELLFSDRLRYLDDIVANSRV-IFKSTSVIAQYHAALQG 232

Query: 239 SGIALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +A+LP ++   +P L  ++ D  V+T SF +Y C+ E L+++ ++ A  +F+
Sbjct: 233 ESLAILPCFMAAQDPRLQAVLNDEIVVTRSFWMY-CH-EDLRHSRRVMALWDFL 284


>gi|304397693|ref|ZP_07379570.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304354865|gb|EFM19235.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 294

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 131/284 (46%), Gaps = 9/284 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R F  +AR  +   A++ L++ Q+++ R+I+  E+ +  +LF R  R   L+E 
Sbjct: 1   MNWDDVRFFLALARQKTLRGASKSLNVDQATVGRRIAAFESALSSRLFIRTPRAFMLSEF 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++    S +   ++    +       P+G +RIA+T  L    +   ++     YPDI
Sbjct: 61  GEQVMAEASAMESAMQAMSRKAACGDSIPAGNVRIASTDTLATVFVIPAIQRLREQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+      DIS    D AIR  +P  S  LI ++L TI M  YA+  Y     EP  
Sbjct: 121 TVTLLTGIGFSDISYRSVDIAIRGARP-DSEELIVKRLATIDMGLYASQRYFDRLGEPQQ 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              L  H L+ F  D++P+  ++    A   + +       L+ N+ L +      G GI
Sbjct: 180 ESGLTDHQLVMFPADMVPRHRQNLCGFAVNSQQV------VLECNTQLLMQSAIKRGIGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            LL  ++   +P L+ +  +   P       +P+ L+   +++A
Sbjct: 234 GLLSTFLANCDPQLIPVFPEKRDPVDIWLVLHPD-LQKVARIRA 276


>gi|222081049|ref|YP_002540412.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725728|gb|ACM28817.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 289

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 118/247 (47%), Gaps = 7/247 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++ SF  AAE   +  S++SR+IS LE  +G++L +R  R + LTE G  
Sbjct: 5   NDMALFVEVVKAKSFRGAAEVTSVPNSTLSRRISALEKAIGLRLLHRTTRRIELTEAGLI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      +L E   +PSG LR++  +D     L   + EF  LYP I  +
Sbjct: 65  YFERCKRIVDEARLAHEQLGEILAQPSGLLRVSLPVDFANTYLAPLIAEFADLYPGINFE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D+  +  D AIR+ +P + S +I R L  +  H +A+P YL+   EP    +
Sbjct: 125 FDLTPRRVDLVSEPFDVAIRMGEP-EPSHMIARPLARLSPHLFASPRYLELNGEPKKPSD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +    L  K     N   T +  IG       ++NS   I +   L  GIA+LP
Sbjct: 184 LLNHQCLCM--LKTKVWTLSNGTDTDEATIG----GRFRLNSIGMIRRLASLDMGIAMLP 237

Query: 246 DYIVKDN 252
           D IV D 
Sbjct: 238 DEIVSDE 244


>gi|78067951|ref|YP_370720.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968696|gb|ABB10076.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 349

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPKVVPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   + L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEHL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+    V   N+   + Q+ +LG G+A+
Sbjct: 186 AEHPSLSL------PTEYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|254460904|ref|ZP_05074320.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           HTCC2083]
 gi|206677493|gb|EDZ41980.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 301

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 135/275 (49%), Gaps = 13/275 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+ +D LR F  +   GS + AA    +S +  S +IS LE+ +G++LF R  R LT T
Sbjct: 1   MSY-FDNLRTFVRIYELGSMSAAARDQRISPAVTSARISQLESHLGVRLFQRTTRSLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   +E  +  + +++  P G L IA  + +G+ L+  ++ EF   +P
Sbjct: 60  EQGRIFYDGACAVLEAVEAAEAGVGDATENPRGTLHIAAPLGVGRRLIAPHVPEFTREFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L + ++ ID++ +  D A  L +P + S+L  RK+        AAP Y+     P
Sbjct: 120 LVDVRLRMTDRKIDLTAEGLDIAFFLGRP-EDSNLRIRKIADCDRVLCAAPSYIAKHGHP 178

Query: 181 LSIQELD--KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +  E+D  KHN +      P   E F W L+T D P         + +    +  + + 
Sbjct: 179 KTGAEIDRGKHNCLNL--RFPGARE-FQWELSTPDGPRKFDVQGRFECDDSDVLTDWALQ 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTV 269
           G+GIAL P + + D   +  LV + ED  TP   V
Sbjct: 236 GAGIALRPVFEIADYLTSGALVTVSED--TPPLPV 268


>gi|254247854|ref|ZP_04941175.1| hypothetical protein BCPG_02666 [Burkholderia cenocepacia PC184]
 gi|124872630|gb|EAY64346.1| hypothetical protein BCPG_02666 [Burkholderia cenocepacia PC184]
          Length = 301

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 130/273 (47%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LRI+     G+  +   + EF + +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSVGHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ EL
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R++  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWSFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + V ++     LV +++    P   ++  +P+
Sbjct: 242 WWEVGEDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274


>gi|119773147|ref|YP_925887.1| LysR, substrate-binding [Shewanella amazonensis SB2B]
 gi|119765647|gb|ABL98217.1| LysR, substrate-binding [Shewanella amazonensis SB2B]
          Length = 290

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA + SFT AA +L +S + +SRQ+  LE  +G KL YR  R ++LTE G 
Sbjct: 3   WEGICEFVAVAEAQSFTAAAGRLGISTAQVSRQVRELEERLGSKLLYRTTRKVSLTEDGQ 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   +V   L+  +  +     +P G +R+   +  G+  +   +  ++  +P +++
Sbjct: 63  LFYRHCRQVLDGLDEAERAVSSLKSEPRGLIRMTAPVTYGEQYVMPIVLAYMQQFPQVEV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q  L N+ +D+     D AIRL   +  SS++ RKL     +  A+P Y+     P S+ 
Sbjct: 123 QCELTNQQLDLVQGGFDLAIRL-GVLPDSSMMARKLAERVQYLVASPDYVSRHGAPHSLS 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H  +  G L     ++   L ++     + R+SC   N+ L+     + G GIA L
Sbjct: 182 ELSRHQCL-LGSLPFWRFQEEGKLRSLKV---KGRLSCSSGNTLLAA---ALAGMGIAQL 234

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y V +   +  L+ +++    P   ++  YP   + + K+    N +
Sbjct: 235 PGYYVDEAIRDGRLLVLLKPFQEPKEGIWGLYPHNRQLSPKIGHLMNML 283


>gi|167822985|ref|ZP_02454456.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|226192810|ref|ZP_03788423.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225935060|gb|EEH31034.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 294

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++    L   +L   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVVDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W    A  D  +  P+   +  N+  + + + + G G+A +PD
Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPQ--SMICNNVETRVCFALRGRGLACVPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+D   +  L  +++  I    T +  +P     + KL+AF +FI
Sbjct: 242 FAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288


>gi|237509186|ref|ZP_04521901.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|235001391|gb|EEP50815.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 299

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 125/274 (45%), Gaps = 16/274 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  ++  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTANLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGVPKRPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++    G GIA
Sbjct: 185 TRHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAATAGGGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           LLP +   +      LVR++ D   P   +Y  Y
Sbjct: 237 LLPTFAAAEPIRTGALVRVLPDCAAPELGIYAVY 270


>gi|90410160|ref|ZP_01218177.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90329513|gb|EAS45770.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 308

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 1/187 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  V  SGSF+ A   LH++ SS++R I  LE ++ + LF R  R L LTE+G  
Sbjct: 3   DLVRVFTQVVESGSFSKAGHALHMAPSSVARNIDNLEKQLRVTLFKRSTRQLLLTEEGQY 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S++    +     + +++  PSG LRI+     G   +   L +FL  YP++ + 
Sbjct: 63  FLVGASKLMEDADQLIRSMDKTNDVPSGTLRISVFESFGNLCINPILPDFLKRYPNVTVD 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LD++ +D++ +  D  IR+ +P   SSL  R L+  H    A+P YL+ C  P + +E
Sbjct: 123 IELDDRMVDMNAENIDLGIRIGRP-ADSSLNARMLMPNHTILCASPSYLERCGTPTTPEE 181

Query: 186 LDKHNLI 192
           + +HN +
Sbjct: 182 VSQHNCL 188


>gi|113971730|ref|YP_735523.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113886414|gb|ABI40466.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 330

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  GS 
Sbjct: 4   EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  +L+ T  E+     + SG LRI        N+L   +  F+ L+P + ++
Sbjct: 64  FYQRSLNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMNVLMRAIFRFMDLHPKLTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I   + +D+  +  D A  +   + +  L+ R + T  +  YA+P YL     P + QE
Sbjct: 124 VINSAEAVDMVKNNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPDYLAKHGTPKTSQE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241
           ++ HN+  F     K   +  W       IGE +   ++     NS    +++ + G GI
Sbjct: 184 IESHNVSLFRLSNGKIFNEL-W-------IGEEQAVRVRGNFCSNSVQVAVEFALQGRGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P  +V +      LV ++ ++       Y  YP     +   + F +FI
Sbjct: 236 VYAPTEVVSEYVTAGQLVTLLPEIEPHPGECYLAYPSRRYVSLASRRFIDFI 287


>gi|320158517|ref|YP_004190895.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
 gi|319933829|gb|ADV88692.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
          Length = 305

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 101/184 (54%), Gaps = 3/184 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V  SGSF+ A   L+++ SS++R I  LE  +   LF R  R L LTE+G   +
Sbjct: 5   LKVFDQVVESGSFSQAGRALNMAPSSVARNIDSLENRIKTTLFKRSTRQLILTEEGQYFY 64

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + +S++    +    E++ +   P G LRI+     G   L   + EFL  YP IQI+L 
Sbjct: 65  QQSSKILRDSDNLLAEMRGNHGVPEGILRISVFESFGNLYLTPLIPEFLERYPKIQIELE 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE-L 186
           LDNK +D++ D  D AIR+  P Q S L  R L+T +    A+P Y+ N   P++  E L
Sbjct: 125 LDNKLVDLNSDNVDMAIRIGTP-QDSRLKARHLLTNYTALVASPAYI-NTHSPITKPEDL 182

Query: 187 DKHN 190
            +HN
Sbjct: 183 QQHN 186


>gi|170744291|ref|YP_001772946.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198565|gb|ACA20512.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 294

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 14/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F    R+GS + AA +L  S + + +QI+ LE  +G +L  R  R  +LT+ G+   
Sbjct: 7   MRAFVATVRAGSMSAAAAELGQSPAMVGQQIAALEERLGTRLLNRTTRRQSLTDFGASYV 66

Query: 68  RVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               ++  ++   Q   ELQ++ V+  G+LRI      G   L   L  + L  PD+++ 
Sbjct: 67  EQCRDILERIALAQEAAELQQTRVQ--GRLRITAPTTFGAEALMPALGGYRLTAPDVELD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++++D+  +  D A R+   IQ S++I R L    M   AAP YL     P+   +
Sbjct: 125 ITLSDRNVDLVEEGFDLAFRI-GAIQDSAMIARPLAPYRMVVCAAPDYLARRGTPIHPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L+ H  I F    P     + +    D R +  PR+  + VNS  ++      G GI + 
Sbjct: 184 LEGHEAIAF---TPSARSPWTFARGDDERAVTPPRM--ITVNSGQAVRAAARAGLGIIMQ 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P+ +V+   +   LVR+  +       ++  Y    + T +L++F +F
Sbjct: 239 PEILVRRDMETGCLVRLFPEWRLGDRPMWLLYHRDRRMTPRLRSFISF 286


>gi|300704962|ref|YP_003746565.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299072626|emb|CBJ43976.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 298

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 131/285 (45%), Gaps = 26/285 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA ++ ++ S++S+ IS LE  +G++L  R  R +  T  G
Sbjct: 5   NFNDLYAFLVVARESSFTKAANEMGMTSSALSQTISALEARLGVRLLSRTTRSVAPTTAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  S  +  +E     LQE   +P+G +R+ T     + +L   L   +  YP+IQ
Sbjct: 65  ERLLQKLSSGFGSIENELQALQELRDRPAGTVRLTTVGHAAETVLWPKLLPLIKAYPEIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI------HMHAYAAPHYLKNC 177
           +++ +D + +DI  +  D  +RL        LI + +V I       M   A   Y  + 
Sbjct: 125 VEISVDYRLVDIVAERFDAGVRL------GGLIDKDMVAIRISPDKRMAVVATTDYFCDH 178

Query: 178 REPLSIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
             P    EL  H  I       G L+P   E    + +V  P+    I     N    ++
Sbjct: 179 EVPRHPSELGSHTCINLRLPSTGALLPWSFERDGVVLSV--PVAGQYI----FNGSGLVL 232

Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           Q  + G+GI  +P+ I ++      LVRI+ED   P    Y  YP
Sbjct: 233 QAVLSGAGIGCVPEDIAEEYVRAGRLVRILEDWCKPLDGYYLYYP 277


>gi|190892251|ref|YP_001978793.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697530|gb|ACE91615.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 304

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 136/280 (48%), Gaps = 14/280 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E+G++L  R  R L+ T+ 
Sbjct: 2   LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSATDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +S+    +E   + L E+  +P+G +RI+  +  G + LQ  + + L  YP  
Sbjct: 62  GRLYYEESSQALRTIEGANLRLAEARAEPAGTIRISAPVGFGGHFLQDAIFDLLSTYPKS 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++  +  D A R    ++ S+LI RKL + H    A+P YL     P  
Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLARRGAPDR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
             +L +H+ +  G           WL  ++ P G+  I        N   ++M   + G 
Sbjct: 181 PADLVRHDCVVAGQ-----STHAQWL--LEGPHGQETIPVSGRFAANEMQAVMAAAIAGY 233

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           GIA LP  +         L R+++   TP   ++  YP +
Sbjct: 234 GIARLPHGVANAYIRGGRLCRVLDGYTTPVGGLHVVYPSS 273


>gi|74317134|ref|YP_314874.1| LysR family transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056629|gb|AAZ97069.1| transcriptional regulatory protein, LysR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 316

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 141/290 (48%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  V  +GS T AAE+++L++S++SR+++ LE  +G+ L  R  R L LTE G   +
Sbjct: 7   MQMFVAVVEAGSITAAAERMNLAKSAVSRRLAELEAGLGVSLIQRTTRRLNLTESGRTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + E+ +      G+L++A     G   L   ++ F+  +PD++++L 
Sbjct: 67  ARCVAILADVEDAEAEVSQGHGALRGRLKVALPQAFGLLHLAPLIQTFMKRHPDVRLELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  D AIR+   +  S+LI R+L  I     A+P YL     P +  +L 
Sbjct: 127 FNDRQVDLMQEGFDLAIRIAT-LADSTLIARRLAAIPHRVVASPGYLARRGTPRAAADLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243
           +H+ + + ++    +  +        P GEP     +  L  +S   ++Q  +   G+ L
Sbjct: 186 QHDCLAYSNVRDPGLWSYR------DPGGEPGQVRVVVRLAASSGEFLLQAAIADEGLVL 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP + +     +  L  ++ D   P    Y  YP     + +  AF +F+
Sbjct: 240 LPAFYLHAALRSGQLSEVLADHRWPEPAAYAVYPPTRHLSARAHAFIDFL 289


>gi|229589552|ref|YP_002871671.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361418|emb|CAY48293.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 311

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 142/290 (48%), Gaps = 11/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  V R   F  AA++L LS + +S++I  LET +  +L +R +R + LTE G +
Sbjct: 19  EDLRVFLTVIRKAGFAAAADELGLSPAYVSKRIQILETTLATRLLHRTSRRIALTEDGER 78

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + R    +    +    EL ++   P G+L I +T   G+N +   L      YPD++I+
Sbjct: 79  VQRWAVHILEDFQQLSDELSDAHDSPRGRLHICSTFGFGRNHVAPALSLLAEQYPDLEIR 138

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +DI  +  D  IR+   I     I R+LV+      AAP YL+    P  + +
Sbjct: 139 LDLLDRVVDIVSEGFDLEIRVGDDIPGQH-IGRRLVSNRRVLCAAPAYLQRRGTPHQLSD 197

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L++H+ +    ++ +    F  W    D      R+   L  N+   ++Q+ + G G+ L
Sbjct: 198 LEQHDCL----VLKERDNAFGIWNLEHDGAQESVRVRGPLSSNNGEIVLQWALDGRGVLL 253

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + VK   +   L++++    T S  V+  YP  L  +GKL+A   F+
Sbjct: 254 RSMWDVKPLLEQGKLMQVLHGY-TQSANVWAVYPTRLAYSGKLRACVEFL 302


>gi|209521036|ref|ZP_03269769.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209498530|gb|EDZ98652.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 307

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 134/297 (45%), Gaps = 8/297 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++++F + A  GS + AAEQL +S ++ SR +S LE ++G +L  R  R + LT+ G + 
Sbjct: 6   QIQLFVLTADLGSLSRAAEQLDMSNAAASRTLSLLEEQLGTRLIERTTRRMWLTDAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           HR    V  +L        + SV P G LR+ +++      L   L +FL  YP++ +QL
Sbjct: 66  HRRCGLVLSELAEADSIAADESVSPRGVLRVTSSVSFAMMHLAPALPDFLERYPNLSVQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              N+  +      D AIR ++    S +  R+L        A+P YL     P + Q+L
Sbjct: 126 TAANQYHNFIEAGIDIAIRTKEHEGDSGITVRRLAETRRVLAASPDYLSTHGRPQTPQDL 185

Query: 187 DKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H ++ +   + P  +     L   +        S L  N    I+     G GI + P
Sbjct: 186 GQHRMLIYNLSVDPHQLH----LGRGEDECTVSISSALDSNEGQVIVAAGRAGLGIVIQP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            YI+ D+     LV ++ED   P  T+   Y        K++ F  F+  + R  + 
Sbjct: 242 MYIIHDDIVAGRLVPVLEDWQLPKLTINLAYQSRRYQPAKIRVFSEFLVERVRSQQL 298


>gi|17549131|ref|NP_522471.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431382|emb|CAD18061.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 309

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 138/293 (47%), Gaps = 15/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V   G F  AA +L L+ SS++RQ++ LE  +G +L  R  R +TLTE G++ +
Sbjct: 7   LSAFVAVVEHGGFAPAARRLGLAPSSLTRQLNALEASLGTRLMNRSTRSVTLTEAGAQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L++    + E +  PSG LR+   +  G+  +   +  FL  +P +++ + 
Sbjct: 67  DDARRILEELDSADRTVSELAGPPSGLLRVTMPVAFGRLHVAPAIPAFLRRFPGMRLDIR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +++  D  D AIRL   + + +L+ RKL        A+P YL     P   ++L 
Sbjct: 127 LTDAMVNLVEDRIDVAIRL-GALTAPNLVARKLAPHRRVICASPDYLGEHGTPAQPRDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN + F  L      D  W  T D    + P    L+ N    + +  + G+G+ L+P 
Sbjct: 186 HHNCLLFDYLT----GDSTWTLTRDGKREKVPVSGNLRANGSELLREAAMGGAGMLLMPT 241

Query: 247 YIVKDN---PNLVRIMED-VITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
           ++V D+     LV ++E    TP        ++  Y    + + KL  F +F+
Sbjct: 242 WLVGDDIAAGRLVPVLEPWTPTPGADEGESAIWAVYLPNRRGSKKLAGFLDFL 294


>gi|254197721|ref|ZP_04904143.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|169654462|gb|EDS87155.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
          Length = 299

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S V PSG LR      +G+ ++   L EFL  YP I ++
Sbjct: 65  LYERCLRLIADVEETENLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGITDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H L+ +       +  + W+    V R     R++   VNS  + +  C+ G G+  
Sbjct: 184 LERHRLVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ D       +   YP     + + + F  ++
Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290


>gi|222081973|ref|YP_002541338.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726652|gb|ACM29741.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 291

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 146/290 (50%), Gaps = 9/290 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LHR 68
           VF  VA   SF+ A  +L LS S++S+ ++ LE  +G +L  R  R L LT +G   L R
Sbjct: 3   VFVQVAELRSFSAAGRKLRLSPSAVSKLVTRLEDRLGTRLLVRTTRSLQLTPEGEVYLER 62

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             + +    E  ++     +  P G+LR++ ++  G   +   + EFL LYP++++++ L
Sbjct: 63  AQAILADIQEAERMVAAGGAAVPHGRLRVSASVAFGVCYVVPLIPEFLTLYPEVELEISL 122

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +  IDI  + AD AIR+   ++ SSL  RKL+       A+P Y++    P +  +LD 
Sbjct: 123 SDSVIDIVGERADVAIRV-GSLRDSSLKARKLLESRRVIVASPAYIERKGRPETPDDLDH 181

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           HN +TF +  P   E +++       +  +P    LQ N+  ++   C+ G G+A +  +
Sbjct: 182 HNCLTF-NFRPTA-EGWSFRDPHTGSVSVKPVFGNLQANNGPTVRSLCLAGVGLARVGQF 239

Query: 248 IVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLK 293
            V+   D   LV ++ED        ++  Y        +++AF +F+ L+
Sbjct: 240 HVQPDLDAGRLVPVLEDFNPEDIEMIHAVYAGHDHLAARIRAFIDFLALR 289


>gi|134294260|ref|YP_001117995.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137417|gb|ABO53160.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 294

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 132/288 (45%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G  
Sbjct: 5   NGIAAFVRAAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEGRH 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   L   +  +  S+ +P G+LR++  + +G   L   L  F   YP++++ 
Sbjct: 65  FYERCQRILEDLRDAEATVTASAQRPRGRLRVSLPV-IGYRFLLPVLPAFRECYPEVELD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     P    +
Sbjct: 124 LDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPRVPHD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           LD H+ + +    P   +  +W    D        + +  N+  ++    + G GI  +P
Sbjct: 183 LDTHDCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVMAGLGIGYMP 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D++ +   D   LV +++D           +P + + + KL+ F +F+
Sbjct: 241 DFLARDALDAGTLVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288


>gi|325526115|gb|EGD03772.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 318

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 141/287 (49%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L  R  R L+LT +G+  +
Sbjct: 1   MEVFTRVVDANSFTRAADTLSMPRASVTTIIQNLEALLGVRLMNRTTRRLSLTAEGAAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++      LQ  + KPSG LR+     LG+ L+  +L  F   YPDI + L 
Sbjct: 61  EHCVKIISEIAEVDSSLQTGNRKPSGLLRVHMPSSLGRRLVIPSLTLFRQRYPDITLDLG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP  I +L 
Sbjct: 121 LSDRPVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLRRVTCASPDYLARHGEPREIADLT 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ + F   +        W+  +D +P+     + + VN   + +   + G G+     
Sbjct: 180 EHHAVNF--RVSHGARAVPWVFMIDGKPVEVRMNATVTVNDSDAYVTCGLEGFGMIQPTL 237

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  N    +LV ++ D       +   YP+    + K++ F +++
Sbjct: 238 FMVLPNLLDGSLVEVLPDCNPKPKPISIVYPQNRHLSAKVRVFADWL 284


>gi|238024793|ref|YP_002909025.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879458|gb|ACR31790.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 314

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 1   MQVFTRVVDANSFTRAAETLSMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTPEGAGYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++       Q  + KP G LR+     LG+ +L   L  F   YPDI++   
Sbjct: 61  EHCIRIMTEISEADASFQAGNRKPHGTLRVHLPSLLGRRVLLPALALFHQRYPDIELHFG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  D  DC IR+  P+  SS++ R++  I   + A+P YL+    P SI+ L+
Sbjct: 121 LSDRPVDLVRDGFDCEIRV-GPLADSSMVARRVGVIKRISCASPDYLERYGRPASIEALE 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI----- 241
           +H  + F            W   +D  + E R+ S + VN   + +   + G G+     
Sbjct: 180 QHRAVNFA--YTSGGRPMPWTFLIDGKLHEVRMNSVVTVNDSDAYVTCALEGFGMIQPML 237

Query: 242 -ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +++P  +   + +LV ++  V      +   YP +   +  ++ F +++
Sbjct: 238 FSVIPHLL---DGSLVEVLPGVYPKPKPISIVYPHSRHLSMTVRVFADWV 284


>gi|330876238|gb|EGH10387.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 301

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 133/292 (45%), Gaps = 14/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+  +
Sbjct: 7   MRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGTAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   EV   +  ++   +++  +P+G LRI   +  G  LL   L  F   +PD+++ L+
Sbjct: 67  QRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFPDVKLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D AIRL    QSS LI R L    +   AAP YL     P   ++L 
Sbjct: 127 LTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAAPDYLARHSAPTRPEDLR 186

Query: 188 KHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240
            HN + F    P   E       W  T   P GE  +     +  N+   + Q    G G
Sbjct: 187 AHNCLAFA--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAARAGMG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + +LPD +V+    +  LV ++ +   P   +   Y +      KL++F  F
Sbjct: 243 VVMLPDALVQRDLQDGRLVALLPEYHLPRRPMNLLYVQDRYRLPKLRSFVEF 294


>gi|229588867|ref|YP_002870986.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360733|emb|CAY47591.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 302

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 132/273 (48%), Gaps = 9/273 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F V+  +GSFT AAEQL  S+  +S++IS LE +  + L +R  R L+LT  G+ 
Sbjct: 5   DDLAAFAVLIEAGSFTLAAEQLGCSKGQLSKRISQLEAQFSVVLLHRTTRKLSLTAAGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  +++  +  L       +G +R+   + LG+    G L EF   YP +QI+
Sbjct: 65  LLPQAQALVVQVDRARQALARLKDDLAGPVRMTVPVSLGETFFDGLLLEFSKQYPQVQIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+N+  D++ D  D  +R    I++  L+ + L+  H    A+P YL++  EP +  +
Sbjct: 125 LELNNRYRDLARDGFDLGVR-SGAIENERLVAKPLLAWHEMTCASPAYLEHYGEPETPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L  H  +    L         WL      +   R+S     N Y  + +  ++G+GIA L
Sbjct: 184 LAAHICL----LNSHYSGREEWLYHQQHELLRVRVSGTFASNHYNLLKKAALVGAGIARL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           P Y++     +  L  ++ D  T S  +Y  +P
Sbjct: 240 PSYVLPAELADGRLRWLLRDYQTRSMPMYLVHP 272


>gi|167572658|ref|ZP_02365532.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 299

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 126/274 (45%), Gaps = 16/274 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFMEQWSGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    +     + +    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLADHVATVVADPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSVLCASPGYLAEYGAPTRPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++  + G G+A
Sbjct: 185 ARHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAAIAGGGVA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           LLP +   +      LVR++ D   P   +Y  Y
Sbjct: 237 LLPTFAAAEPIRAGALVRVLADCTAPELGIYAVY 270


>gi|76810121|ref|YP_332968.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|167823599|ref|ZP_02455070.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167910386|ref|ZP_02497477.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|226198654|ref|ZP_03794220.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254188333|ref|ZP_04894844.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254258856|ref|ZP_04949910.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|76579574|gb|ABA49049.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|157936012|gb|EDO91682.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|225929397|gb|EEH25418.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254217545|gb|EET06929.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 299

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP I ++
Sbjct: 65  LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H L+ +       +  + W+    V R     R++   VNS  + +  C+ G G   
Sbjct: 184 LERHRLVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGPIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ D       +   YP     + + + F  ++
Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290


>gi|261492013|ref|ZP_05988588.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261312296|gb|EEY13424.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 296

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 141/300 (47%), Gaps = 24/300 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + LR F +VA++ SFT AA Q+ +SQS++S  I G+E  + IKLF+R  R ++ T
Sbjct: 1   MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEERLQIKLFHRTTRSISTT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L++    ++ +++     L E      G LRI     + +++L     EF+  YP
Sbjct: 61  EAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEHVFRDVLADKFAEFVKRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L+ +++ +DI  +  D  IRL   +    +  R      M A A+P+YL     P
Sbjct: 121 EVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRISPDAKMTAAASPNYLAQHGTP 180

Query: 181 LSIQELD-----KHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISCLQVNSYL 229
            +  +L      KH L T G ++     D         PI       +P+ +    N +L
Sbjct: 181 KTPFDLTEHHCLKHRLATLGGILAWEFRD---------PITKKIVKFQPQGNLTANNGFL 231

Query: 230 SIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +  Y   G GI   P   ++   DN +LV I+ D        +  YP   +N+  LKA 
Sbjct: 232 -LQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLYYPNRRQNSPLLKAL 290


>gi|73537527|ref|YP_297894.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120864|gb|AAZ63050.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 305

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 140/294 (47%), Gaps = 14/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSFT AA  + +S +++SR ++ LE  +G +LF R +R L+LT  G
Sbjct: 6   DFEGLAMFAKVAEEGSFTAAARVMGVSVATVSRGVARLEERLGARLFNRTSRELSLTGFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +      +Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  QTICDKAGAIYRQAEEAESAAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + L +  +D+  D  D A+R+   +  SSL+ R+L  +     A+P YLK    P   
Sbjct: 126 IDMHLSDASVDLVADGYDAALRI-AALPDSSLVVRRLCAVTQFVVASPAYLKREGRPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGS 239
           +EL   + +++     +   D  W  T    +GE         L+V +  +++   + G 
Sbjct: 185 RELADRSCLSYAY---RARSDV-WRFT--NAVGEEESVMPTGPLRVTNSEALLPTLLDGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            IA LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++ 
Sbjct: 239 AIAELPEFIAGEYLADGRLETILTDWSLTKGGLYFVTPSARARPAKVAALSDYF 292


>gi|78067279|ref|YP_370048.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968024|gb|ABB09404.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 300

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 142/298 (47%), Gaps = 11/298 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD      + V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   I+  +S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEDAAIDAGQSKARVRGRLRVNVDATFGHYVLAPKMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+  Y+   
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETRVLTCASAAYVARH 179

Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYC 235
            EP   ++L D H  +   D  P     F W     + +        L VN    ++  C
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPFEWEFHRGKEVVPFDAAGRLMVNDTGMLLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G+GIA L +   +D   +  L+ ++ +     F +Y  +  +   + K++ F +F+
Sbjct: 238 LGGAGIAQLLELYARDILADGRLMLLLPEWADEKFPLYAYHHASNLVSAKVRVFLDFV 295


>gi|296446336|ref|ZP_06888281.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
 gi|296256109|gb|EFH03191.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
          Length = 300

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  VA +GSFT AAE+L LS++  S+ +  LE  +G++L  R  R + +TE G+ 
Sbjct: 5   EAMRVFVAVADAGSFTAAAERLDLSRAMASKHVMDLEARLGVRLLDRTTRSVGVTEAGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+   + T + E    + +P G+LR++     G   +   +  F   +  + ++
Sbjct: 65  YATRCREILDAIATAEQEATSRAAEPVGRLRVSAPSFFGARFVAPLVAAFAERHLRVGVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD+K +D+  +  D AIR+ + ++ SSL+  ++ +  +    AP YL     P    +
Sbjct: 125 LALDDKFVDLVEEGFDLAIRIGR-LEDSSLVASRIASTRLMICGAPSYLDRRGRPRGPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H  + +          F      D P G   +   S    NS  ++    V G G+ 
Sbjct: 184 LSGHECLRYSHATVGAAWPF------DGPDGPELVRLSSRFASNSAEALCAMAVAGLGLV 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             PD+ V +      L +++ D +     ++  +P       K++AF  F+
Sbjct: 238 CAPDFYVAEPLRAGALEQVLADRMIEPLGIFIVHPSRRHVPSKVRAFIEFL 288


>gi|262376435|ref|ZP_06069664.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145]
 gi|262308574|gb|EEY89708.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145]
          Length = 294

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 144/293 (49%), Gaps = 16/293 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD LR F V+AR+ + T+AA  + +  S+++R+I  LE  +G +LF R A G  LT
Sbjct: 1   MKVDWDHLRFFLVLARAKTLTNAARLIGVEHSTVARRIQALENTLGTQLFKREATGYELT 60

Query: 61  EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            +G  L  RV      ++E + I++ +      G++RI      G   L   L EF   Y
Sbjct: 61  SEGLALVPRV-----EQMEQSFIQIDKRHDPLQGRVRIGAPEGFGTAFLARLLAEFSQHY 115

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I LI   K I +S   AD  I + +P +S   I  +L    +  Y + HYL+   E
Sbjct: 116 PLLTIDLIPVPKAIKLSHREADIVIAIDRP-KSGPYIITRLSNYCLKLYGSQHYLQQNPE 174

Query: 180 PLSIQELDKHNLITF-GDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVL 237
              +++L +H  + +  DL+         L +++R P+     +C + NS L+       
Sbjct: 175 IKKLEDLQQHRFVDYIDDLVYSTA-----LYSLERLPLQVS--ACFRSNSILAQEIAVRA 227

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+G+A+LP ++V D   L  ++   ++ + T +      L++  K+K   +F+
Sbjct: 228 GAGLAILPKFLVNDKSELKEVLGQQLSFTHTFWMLTLVDLQHEPKIKLVWDFL 280


>gi|311108827|ref|YP_003981680.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763516|gb|ADP18965.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           179 [Achromobacter xylosoxidans A8]
          Length = 298

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 8/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V   G F  A+ Q+ LS +++S+ I+ LE+ +  +L  R  R ++LTE G++ +
Sbjct: 7   LKVFRQVVERGGFAAASRQMGLSPAAVSKNIAELESHLAARLLNRTTRRMSLTEAGARYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L   +  L      PSG LR++  + L    L   +  FL  YP + + L 
Sbjct: 67  EQVARILDDLGEAEQSLGPLQQAPSGTLRVSAPMSLSLVRLSAAMPRFLERYPQVSLDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ IDI  +  D AIR    ++ SSL+ RKL+T+      AP Y +    P S   L 
Sbjct: 127 LEDRRIDIVKEGYDVAIRGTDRLEDSSLVARKLMTLDHVLCGAPAYFERHGLPASPLALR 186

Query: 188 KHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               + F  L     E  F      +R    P     +V+S L++      G G++L+P 
Sbjct: 187 GMERVQF-TLSGHADEWTFKRAGETER---VPVRGRYRVSSSLAVRDALRAGFGVSLVPR 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             V+   D+  L  +++D       VY  YP       K++AF +F+ 
Sbjct: 243 IYVQQDLDSGALQAVLQDWQPDETYVYAVYPSRRHMVAKVRAFVDFLL 290


>gi|261253484|ref|ZP_05946057.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
 gi|260936875|gb|EEX92864.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
          Length = 293

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 132/275 (48%), Gaps = 14/275 (5%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +KLR   +F  +   GSFT  AEQ   S+S +S++IS LE E+G +L +R  R + LT  
Sbjct: 2   NKLRAIELFVRLTEVGSFTRLAEQQRTSKSMVSKEISRLEQELGARLLHRTTRNIQLTYV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +  +E+  K+E     ++  +  P GK+++   + LG   L     +F+  +PD+
Sbjct: 62  GEEYLKYANEILAKIENADAFVKTLAQAPRGKIKVNAPMALGITDLSMLFADFMQAFPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + + L +++ID+  +  D   R       S+ I + L   + H  A+  Y  +     +
Sbjct: 122 DLDIHLGDENIDLVAEGFDLGFRASSQTFDSNYIGKALCEFNYHLCASRDYFSHHAPIQT 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L +HN   +     K +    W   VD  I       L+VNS L ++Q    G GI 
Sbjct: 182 KQDLLQHNCFEYSYFKGKNV----W--PVDGVIATS--GSLRVNSVLFMLQVIKAGRGIG 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            LP+++ +   +N  LV ++ D      T+Y  YP
Sbjct: 234 YLPEFVCRELLENGQLVEVLPDSEKSKLTLYALYP 268


>gi|171323082|ref|ZP_02911716.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171091525|gb|EDT37152.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 305

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AAE L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAQAAELLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAELIESEASAQALEPHGLVRVNAPMSFGLRHLSPLLPAFLERYPRVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     A+P YL+    P   
Sbjct: 126 IDLVLSDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLERRGRPTHP 184

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++++H  +T+ +L  P+     N  +  D  +G      ++ N+   I    + G G+A
Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRNPASGED--VGVSVHGRIRANNADVIAPALLAGHGLA 242

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L P+++V D   L R   + + P + +       +   G L+A R  + L
Sbjct: 243 LQPEFLVWD--ALQRGELEEVMPEWKIADINVNLVTPPGMLRAARVTVLL 290


>gi|301156291|emb|CBW15762.1| predicted DNA-binding transcriptional regulator [Haemophilus
           parainfluenzae T3T1]
          Length = 299

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  V  + SFT AA Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISVFCKVIETQSFTQAANQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIVPTEAGML 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L      +   +    G L I+   D G   +  NL +F+ L+P++ ++
Sbjct: 65  YYQRCQAILLDLSEADSSISNMATSLQGNLLISVPRDFGLLYISPNLPKFIELHPNLHVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K +D+  +  D A+R+   +Q SSL+ RK+ +  MH  A+P YL+    PL+  +
Sbjct: 125 IEFEDKRVDLVAEGYDLALRIGY-MQDSSLVARKISSSLMHFVASPSYLEARGTPLTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ H     G L    +   +W +T    I   +I    V N+ +++++    G GI+  
Sbjct: 184 LEYHQ----GLLYKSSLNQVHWQSTKANQIQRYKIQSKVVSNNGMALLEMTKAGLGISNA 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD+ VKD   + +LV I+ +       +Y  YP       K++AF  F+
Sbjct: 240 PDFFVKDALASGDLVEILSEYKQKPLDIYVVYPNRRHLPAKVRAFIEFL 288


>gi|157963029|ref|YP_001503063.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848029|gb|ABV88528.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 297

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 141/289 (48%), Gaps = 13/289 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  V +S  F+ AAE L  S S +S++++ LE+ +G++L  R  R + LT +G 
Sbjct: 5   FDGIVIFVQVVKSAGFSAAAEVLGHSTSYVSKEVNKLESRLGVRLLNRTTRSIGLTPEGD 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++    E     + +  V P G L+++  +   Q  L+  + E+L  YP++ +
Sbjct: 65  AYYQQCLQLISDAEQAIGLITQHDVSPRGVLKLSCPVGFAQQHLKPIISEYLKRYPNVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +K  D+  D  D AIR    ++ SSLI RKL +   +  A+  Y+    +P   +
Sbjct: 125 DLDLSDKRTDVIADGYDLAIRASAQLEESSLICRKLYSCKAYTVASKEYISRHGKPHHPR 184

Query: 185 ELDKHNLITFGDLIPKCMEDF----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           EL+ HN I + +       D+        +VD     P+I C   N  L++    + G G
Sbjct: 185 ELETHNGICYSNHKQPSRWDYIDHDGKHFSVDI---RPKILCNNGNMQLNL---ALAGHG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  LP++ ++   +N  L  + +   + +  V+  YP     + K++AF
Sbjct: 239 ITRLPNFYMQGELENDQLEILFDKFPSANIDVFVVYPSRKHLSPKVRAF 287


>gi|27366629|ref|NP_762156.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27358195|gb|AAO07146.1|AE016808_166 Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 305

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 101/184 (54%), Gaps = 3/184 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V  SGSF+ A   L+++ SS++R I  LE  +   LF R  R L LTE+G   +
Sbjct: 5   LKVFDQVVESGSFSQAGRALNMAPSSVARNIDSLENRIKTTLFKRSTRQLILTEEGQYFY 64

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + +S++    +    E++ +   P G LRI+     G   L   + EFL  YP IQI+L 
Sbjct: 65  QQSSKILRDSDNLLAEMRGNHGVPEGILRISVFESFGNLCLTPLIPEFLERYPKIQIELE 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE-L 186
           LDNK +D++ D  D AIR+  P Q S L  R L+T +    A+P Y+ N   P++  E L
Sbjct: 125 LDNKLVDLNSDNVDMAIRIGTP-QDSRLKARHLLTNYTALVASPAYI-NTHSPITKPEDL 182

Query: 187 DKHN 190
            +HN
Sbjct: 183 QQHN 186


>gi|251788162|ref|YP_003002883.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247536783|gb|ACT05404.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 298

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 133/290 (45%), Gaps = 20/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA Q  +++SS+S +IS LE  +G++LF R  R L LT  G +  
Sbjct: 8   MALFALVAECGSFTEAARQAGMAKSSLSLRISQLEQALGLRLFNRTTRKLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E  ++ +      PSG+LRI     LG  LL     EF L +P + + ++
Sbjct: 68  VHCREMRQASERAEMAMLHLRNNPSGRLRITAPAGLGATLLARLTAEFQLRFPAVSLDIV 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  D A+R  KP Q SSLI R L  +  +  A+  YL      +  ++L 
Sbjct: 128 VADRVIDLVEEGFDVALRTGKP-QDSSLIGRSLGQVPHYLVASTAYLAGFAPIMHPRDLQ 186

Query: 188 KHNLITFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG-SGIA 242
            H  IT          +  E F W           R+    +   L   + C L   GI 
Sbjct: 187 SHRCITHRAWPEWGFHRETEYFLW-----------RLPQSHITDNLLYARACALADGGIT 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LLP ++ +   D   LV ++ +    +  +Y  YP    N+  L  F +F
Sbjct: 236 LLPTFLCREPLDRGELVCLLPEWQADTNDLYLIYPGRKLNSPALNCFIDF 285


>gi|182677572|ref|YP_001831718.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633455|gb|ACB94229.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 304

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 103/186 (55%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F V A  GSF+ A  +L+LS+SS+ + ++ LE  +G++LF+R  R   LTE+G   +  
Sbjct: 9   IFLVCADEGSFSAAGRKLNLSRSSVGKTVARLEDMLGVRLFHRSTRHQALTEEGKIYYEH 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
               +++L+  +         PSG LR+   + LG++ +   L +F   + D+++ L L+
Sbjct: 69  ARRAHNELDRARQIFASGHRSPSGILRVTAPMSLGRSCIGPLLLDFTSRFSDLKLVLSLN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIR+   I ++ +  RKL T  M  YA+P YL     P S  E D+H
Sbjct: 129 DRPVDLIDEGFDLAIRVGATINTTGIAGRKLSTQAMRLYASPSYLGARGTPKSCGEFDQH 188

Query: 190 NLITFG 195
            ++ +G
Sbjct: 189 QILAYG 194


>gi|159186538|ref|NP_396136.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141598|gb|AAK90577.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 25/294 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +GS   AA +L +++S +SR+IS LE  +G  L  R  +G  LT+ G + H   
Sbjct: 15  FIRVVETGSIAGAASRLGIAKSIVSRRISRLENFLGATLLTRSQKGTALTDVGREYHLRA 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           +    +LE+ Q  +  S+ + SG++R++  +  G+  L   L EF LL+P I   +  ++
Sbjct: 75  ASGLAELESAQEMVVRSTTEASGQVRVSVPVAFGEFCLAPLLAEFALLHPRIHFDVRFED 134

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D+  +  D A+R+   I  S LI RKL  +     A+P YL+    P    EL  HN
Sbjct: 135 RQPDLVAEAYDLAVRI-GSIPDSVLITRKLAKVRWAVVASPSYLEARGRPSKPSELAAHN 193

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGIALL 244
            I +        + F W     R  G      ++VNS         ++     G GI +L
Sbjct: 194 AILY------SFDTFGW-----RFQGPDGWEQVRVNSQFRSDNGQMMLSAARAGLGIVVL 242

Query: 245 PDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLK 293
           P ++V+++     + E  + P ++     ++   P A     +++A  NF++ K
Sbjct: 243 PVFMVQESLASGDLEE--VVPGYSHAGADLHILMPPARAGIARVRALVNFLYEK 294


>gi|222110064|ref|YP_002552328.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221729508|gb|ACM32328.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 310

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 21/298 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +  F  V  + SFT AA+ LH+S++++++ +  LE  + ++L  R  R + +T +G+
Sbjct: 4   FDAMVAFARVVETRSFTQAAQTLHMSKTTVTQLVQQLEARLRVRLLNRTTRKVNVTAEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +  L  +S  P G+LR+     L + +L      F   YPDIQ+
Sbjct: 64  AYYERVVRLLGDLDDAETSLTSASSAPRGRLRVDVPSPLARMVLVPAFAAFHARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R  +P   +SL+ R +  + M  YAAP YL N   PL  +
Sbjct: 124 HMGVSDRVVDLIDENVDCVVRGGEP-GDASLVARHVGDLSMGLYAAPTYLANAGMPLHPK 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            L+   H+++ F     G ++   +   +    V   +G   I+    N+YL+     V 
Sbjct: 183 NLEAAPHHIVGFLGSSTGRVLSCVLHRGDEQVRV---MGRYAIATDDGNAYLAA---GVA 236

Query: 238 GSGIALLPDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G   LP Y+    P+L R     + ED       +Y  +P       +L+ F +++
Sbjct: 237 GLGALWLPQYMAA--PHLARGELAPLFEDWAIAPMPLYIAFPPNRHVGARLRVFMDWM 292


>gi|170719261|ref|YP_001746949.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757264|gb|ACA70580.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 295

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 142/293 (48%), Gaps = 16/293 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLSAAKRLNTTHSTVARHIESIEKSLGTPLFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ + ++ P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFDRYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  LI RKL    +  YA+  YL       +
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-SADLLITRKLTDYRLALYASQAYLDRAPPLRN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ I + D +    E    L  ++     P ++  +  S ++       G GIA
Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRAPNVA-FRSTSVIAQQTAARAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIF 291
           +LP+Y+ + +P LVRI+     PS T+    + C    L  + +L+   +++ 
Sbjct: 235 VLPNYMARHDPTLVRIL-----PSETIQRSYWICTRRELHKSVRLRVVWDYLL 282


>gi|186474802|ref|YP_001856272.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191261|gb|ACC69226.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 362

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G    
Sbjct: 7   MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP +   + 
Sbjct: 67  ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL     P   ++L 
Sbjct: 127 LVDRQVDLVEEGFDVGVVIARHMRSASIVTRRLTTGCMTVCATPAYLDKHGTPTRPEQLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALL 244
           +H  ++         E +        P GE R+    V   N+   + Q+ +LG GIA+L
Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPDGEVRVRPTNVIVANNTEMLRQFALLGMGIAIL 240

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 241 PSYLIGRDTTRGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|54301849|ref|YP_131842.1| hypothetical protein PBPRB0169 [Photobacterium profundum SS9]
 gi|46915269|emb|CAG22042.1| Hypothetical protein PBPRB0169 [Photobacterium profundum SS9]
          Length = 297

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 146/289 (50%), Gaps = 8/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R +  V   GSFT  A++L+++Q SIS++I+ LE +VG  L YR +R + LT QGS 
Sbjct: 7   DCMRAYIRVTHLGSFTAVADELNVTQGSISKKIAWLERDVGFSLLYRSSRRVELTAQGSS 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++  ++E T+  L+    +  G+L ++    +   LL   +  F+   P + I 
Sbjct: 67  YLTYCEQMIEEMELTEAALKGELDEVVGELTLSVPSAMATRLLAKPIGMFMTQNPKLVIN 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + ++++ +++     D AIR  + +  S+   R L       +A+P YLK    P++  +
Sbjct: 127 VSVNDRVVNLIESGIDIAIRASE-LADSAYKARFLFHNQAVYFASPDYLKQHARPVTASD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L++H  +T+    P    D   +   D  + + +++   + +S   ++   + G G+ +L
Sbjct: 186 LEQHECLTYSLASPS---DIWLVKQKDSLVQKVKVNEVFKSDSAEMLLAMALSGHGVGVL 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V+   DN  LV+++ED    S  +Y  Y        +++AF +F+
Sbjct: 243 PSWMVEQCLDNNQLVQLLEDYTATSLPMYAVYKSGEYQPYRIRAFIDFL 291


>gi|238028949|ref|YP_002913180.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878143|gb|ACR30476.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 352

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 133/285 (46%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G    
Sbjct: 7   MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP +   L 
Sbjct: 67  ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRYPKVVPDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P   + L 
Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGVPTHPEHLM 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALL 244
           +H  ++         E +        P GE R+    V   N+   + Q+ +LG GIA+L
Sbjct: 187 EHPSLSLPS------EYWGDERVFTGPDGEVRVRPTNVVVANNTEMLRQFALLGMGIAML 240

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 241 PSYLIGGDTARGKLVRLLPDYRLPQVEINVAYPSRRHLPAKVRTF 285


>gi|254482988|ref|ZP_05096223.1| LysR substrate binding domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036673|gb|EEB77345.1| LysR substrate binding domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 292

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 13/293 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  W+ +  F  V R GSFT AA+ L +S+S +SRQI+ LE  +  +L  R  R ++ T+
Sbjct: 3   SHRWESIEAFERVVRLGSFTRAADDLGVSRSHVSRQINALENRLDAQLLLRTTRKVSTTD 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    +V   L+  +  + +    P G LR+      G++ +     +F+  Y D
Sbjct: 63  VGQAFYMQCRQVLDNLDEAERAVLDLQANPRGILRVTVAGAFGEDFIAPAALDFMAEYRD 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L   N+ ID+  +  D AIR    ++ SSLI R++ T  +   A+P YL     P 
Sbjct: 123 LIVELNFSNRLIDLISEGYDVAIRA-GTLKDSSLIARRISTRKLLTCASPEYLLRNGTPS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           SI  L  HN +  G L        +W    +    + R+S   + N+  S+++    G G
Sbjct: 182 SIHSLTNHNCL-LGTLD-------SWRFRENGRNQDLRVSGNWRSNNGRSLLRAARAGLG 233

Query: 241 IALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  LP  Y+ +D  +  L+ ++ED       V+  YP     + K++ F NF+
Sbjct: 234 LVQLPSFYLDQDIIDGALLPVLEDYNPTDTGVWAVYPHNRHLSAKVRLFVNFL 286


>gi|170696696|ref|ZP_02887812.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138399|gb|EDT06611.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 306

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 137/304 (45%), Gaps = 22/304 (7%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +   GSF  A   L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERVLNGMGVLTAIVDCGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +     +   LE         +    G+LR+       + +L   L  F+ 
Sbjct: 61  TLTDEGRRFYEQIVPLLSGLEDAAASAARGATAVRGRLRVNMDPFFSRLVLGPRLGGFVD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+Q++LI  ++  D+  D  D AIR  +P   SSLI RKL+   +   AAP YLK  
Sbjct: 121 KHPDLQLELITRDQLGDMVGDGFDVAIRFGEP-PVSSLIARKLLDTRILTVAAPSYLKKH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYL 229
             P +  EL+  +H  I F D  P     F+W     R      P G      L VN   
Sbjct: 180 GHPANPAELESGQHACIKFRD--PLTGYPFSWEFHRGRKKIVVTPQGR-----LTVNDVG 232

Query: 230 SIMQYCVLGSGIALL---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++   C  G GIA +       +  +  LV +  +     + +Y  YP       K++AF
Sbjct: 233 TLHSVCAAGQGIAQILALGAEALLASGKLVELFPEWGDELYPLYALYPSRHHPPAKVRAF 292

Query: 287 RNFI 290
            +FI
Sbjct: 293 IDFI 296


>gi|295681411|ref|YP_003609985.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295441306|gb|ADG20474.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 296

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 132/276 (47%), Gaps = 13/276 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F+ V  +G F+ AA +   SQS+IS+ I  LE  +G+ LF R  R +TLT+QG 
Sbjct: 4   FHELNAFFAVVEAGGFSAAARRTGESQSAISKSIGALEKRLGVLLFNRSTRRVTLTDQGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +  T  +  ++E    EL  S++  SG +RIA+    G+  +   + E L  +P +++
Sbjct: 64  RYYERTKPLLDEIEVADSELTSSTLDVSGLVRIASASTFGRLHVLPLIPELLSRHPGLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L +   D+  D  D AIR+       S+++R + +  +    +  Y +    P    
Sbjct: 124 DLVLSDFVRDMVEDRIDLAIRVGSINDPDSVVKR-IASTPLVCVGSRRYFEQYGVPKEPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGI 241
           EL  HN + +G L    +E  NW      P G    P    L  NS  +I    + G GI
Sbjct: 183 ELANHNCLLYGGL----LESANW--PFHGPRGRFSVPVRGNLSSNSVETIRSAVLAGVGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            L     + D   +P++V +++D I  +  V   +P
Sbjct: 237 GLFAKLSLADELKHPDIVTVLDDFIRDARDVSVIWP 272


>gi|238022638|ref|ZP_04603064.1| hypothetical protein GCWU000324_02547 [Kingella oralis ATCC 51147]
 gi|237865841|gb|EEP66977.1| hypothetical protein GCWU000324_02547 [Kingella oralis ATCC 51147]
          Length = 289

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 121/252 (48%), Gaps = 18/252 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++ +F  VA++  F+ AA +L + QS++SR+I+ LE  +G++LF R  R L LT  G+ 
Sbjct: 5   NEMALFVEVAQANGFSRAAAKLGMPQSTLSRRIAALEDALGLRLFNRSTRRLELTGAGAY 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +       L E      G LR++  +D+  N++   L EF   YPD+++ 
Sbjct: 65  YLERALPIVAEARLLHGALDEMRETVRGALRVSLPVDMAYNMVAPLLPEFAARYPDLRVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             +  + +D+  +  D A+R  K +  S  I   L       YAAP YL    EP S  +
Sbjct: 125 FDVTPRKVDLIGEPFDLAVRTGK-LPDSDYIATPLAEFSGCLYAAPGYLAQRGEPQSPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L  H  + F D +        W  TV R  G  R+     S    NS   + Q   +G G
Sbjct: 184 LAAHECLRFSDGL--------W--TVQR--GSERVTVQPQSRFGANSPGMLRQMAAVGLG 231

Query: 241 IALLPDYIVKDN 252
           IALLP+ +V+D+
Sbjct: 232 IALLPEILVRDD 243


>gi|87120816|ref|ZP_01076709.1| hypothetical transcriptional regulator [Marinomonas sp. MED121]
 gi|86164044|gb|EAQ65316.1| hypothetical transcriptional regulator [Marinomonas sp. MED121]
          Length = 287

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 121/248 (48%), Gaps = 12/248 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GSF  AA +L+ S+S +S Q++ LE   G++L +R  R L LT +G K++
Sbjct: 1   MAIFVTVVEAGSFAAAARKLNSSRSRVSEQVAQLEAAAGMRLLHRSTRQLALTSEGEKVY 60

Query: 68  ---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              ++  E+ H++E        S  +PSG++ I+TT D+    L   L EF   YP +Q+
Sbjct: 61  AKAKILPELIHEIEAV-----ASPAEPSGRVAISTTHDIAIKHLIPVLNEFQRRYPKVQV 115

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            LI+ ++ +D+  +  D AIR+  P    SLI R +       YA+P YLK    P ++ 
Sbjct: 116 DLIISDQKLDLIAEQIDIAIRIGLP-NDDSLIGRVMYEERSALYASPAYLKEHGRPKTLG 174

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H  +    +     +   +     +P+          NS L      + G GI+ L
Sbjct: 175 ELAQHKWVVISQMSQNGEQSLIYQG---KPVHINPAYYQLTNSPLVAQSLTLAGHGISTL 231

Query: 245 PDYIVKDN 252
               VKD 
Sbjct: 232 LPVTVKDE 239


>gi|332715762|ref|YP_004443228.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062447|gb|ADY66137.1| transcriptional regulator LysR family [Agrobacterium sp. H13-3]
          Length = 297

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 127/273 (46%), Gaps = 6/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR  SFT AA +L +SQS++S  +  LE  +G++L  R  R ++ TE G +
Sbjct: 7   NDLAAFIAVAREQSFTRAAAKLGVSQSALSHTLRQLEARLGVRLLMRTTRAVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       + ++E     L E   KP+G +RI         +L   L++FL  YPDI+++
Sbjct: 67  LLNGIGPHFDEIEAHVDALNELREKPAGTIRIVAAEYAITYVLWPKLRKFLPQYPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LILDN   DI  +  D  +R+ + +    +  R      +    +P Y KN   P   ++
Sbjct: 127 LILDNGLTDIVTERYDAGVRMGEHLAKDMISARIGPDFCLAVVGSPAYFKNRPHPRHPKD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ I F   +P     + W      R I       L  N+  + ++  + G G+A +
Sbjct: 187 LVGHDCINF--RLPSAGGLYVWEFEDKGREIKIKVDGQLAFNNSFNSLEAALDGFGLAYI 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYP 274
           P+ ++     +  LVR+++    P    Y  YP
Sbjct: 245 PEEMILPYVADGRLVRVLQKYSPPWDGYYLYYP 277


>gi|193077534|gb|ABO12366.2| putative transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 300

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 141/296 (47%), Gaps = 13/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QNLL   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNLLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237
             S  EL  H +++  +   + ++    L   D  + + ++S   +  N Y+ + Q    
Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYM-LAQLASQ 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GIALLPD   +D   +  LV+I+ D        +  YP      G L A R FI
Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289


>gi|296115882|ref|ZP_06834506.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977570|gb|EFG84324.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 306

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 132/282 (46%), Gaps = 17/282 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA  GSF  AAE++ LS+ ++S+ I  LE  +G+ LF R++R ++LTE G
Sbjct: 5   DFEAWAIFAKVAEFGSFARAAEEVQLSKPTVSKAIGRLEQALGVALFNRNSRHISLTEMG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    + +  + E  + E +  + +PSG +RIA  +  G   L   L  FL  YPDI 
Sbjct: 65  RMLLGHANRILAEAEAAETEARGGTQRPSGLIRIAAPMTFGIGHLSPVLPAFLAKYPDID 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +   +  +D+  +  D A+R+   +  SSL  RKL  + +   A+P YL     P   
Sbjct: 125 ITVDFSDALVDLVAEGYDVALRIAS-LADSSLRARKLCEVRLLLVASPEYLDRVGRPDHP 183

Query: 184 QELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           ++L+ H    +      G +  + + + N           PR       ++L  +     
Sbjct: 184 RDLETHKSFVYTNTSAPGKVRLRQVNNGNEFVLTQ----TPRFRADNAEAFLPAL---AA 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           G G  L P+++V +   +    RI+ D   P+  +Y   P +
Sbjct: 237 GLGFGLFPEFMVGEGLASNRFERILPDWEAPAIALYLVTPSS 278


>gi|221197596|ref|ZP_03570643.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221204270|ref|ZP_03577288.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176436|gb|EEE08865.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221184150|gb|EEE16550.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 335

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 149/300 (49%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +V R  SF+ AAEQL +S + +S++I+ LET++G +L +R  R +T+TE G +
Sbjct: 36  EDLRVFSLVVRLASFSAAAEQLAVSAAYVSKRIAMLETQLGTRLLHRSTRRVTVTEAGER 95

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + ++
Sbjct: 96  VFAHAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLNVR 155

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  +R+   I +  LI R+L   +    A+P YL     P ++ +
Sbjct: 156 LDLFDRLVDVAAEGYDLDVRIGDEI-ADRLIARRLAANYRVLCASPDYLARRGMPRTLAD 214

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI------MQ 233
           L  H+ +   +               D P G  R++       ++V   LS       +Q
Sbjct: 215 LASHDCLAIKER--------------DHPFGVWRLNVRGDTVTVKVGGALSTNHGEVAVQ 260

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + G GI L   +      D+  L R++ D + P+  ++  Y E +  + K++   +F+
Sbjct: 261 WALAGRGIVLRSIWEAGPLIDSGALCRVLPDAVQPA-NIWAVYTERVAASAKVRVCVDFL 319


>gi|239815514|ref|YP_002944424.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802091|gb|ACS19158.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 314

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 140/289 (48%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+VF  VA +GSFT AA++L L +++IS  +  LE ++G +L +R  R + LT  G  
Sbjct: 5   DLLKVFLRVAETGSFTRAADRLALPRATISTAVQQLEAKLGSRLLHRTTRRVGLTPDGEV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   +E  + +   S  + SG+L++     + + L+   L +F   YP I+++
Sbjct: 65  LLERARTLVADMEDIEQQFLPSRSQVSGRLKVDVPSRIARRLIAPALPDFFERYPAIELE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+ ++  DCA+R+  P+ SSSL+ R L    +   A+P YL     P +  +
Sbjct: 125 LGSSDRAVDLVLEGVDCALRV-GPLASSSLVARPLGHFTLINCASPAYLARHGTPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  + +    P       W    D      R+ S +  N+  + +   + G G+  +
Sbjct: 184 LPEHIAVNYAS--PTSGRAAPWEWQRDGETATLRMRSQVSANNAETYIACALAGLGLIQI 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y V+++     L  ++ +       V+  YP     + +++AF  ++
Sbjct: 242 PAYDVREHLAAGELAEVLPEARAQPLPVHLVYPHRRNLSRRMQAFAGWL 290


>gi|167565553|ref|ZP_02358469.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 299

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 126/274 (45%), Gaps = 16/274 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFMEQWSGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    +     + +    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLADHVATVVADPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSVLCASPGYLAEHGAPTRPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++  + G G+A
Sbjct: 185 ARHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAAIAGGGVA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           LLP +   +      LVR++ D   P   +Y  Y
Sbjct: 237 LLPTFAAAEPIRAGALVRVLADCTAPELGIYAVY 270


>gi|296389531|ref|ZP_06879006.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 300

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 1/195 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +++   VA + SFT AA  L L+QS +SR I  LE E+G++L +R  R ++LT  
Sbjct: 1   MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  +LE  +  L +    PSG L+I T   LG+ ++   L+E    YP +
Sbjct: 61  GQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRRYPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI+  + ++ +D++ +  D A+RL + +    LI R L  +     A+P YL++   P  
Sbjct: 121 QIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRSHGTPER 179

Query: 183 IQELDKHNLITFGDL 197
           +++L  HN  T  DL
Sbjct: 180 LEQLAGHNCPTVRDL 194


>gi|254247369|ref|ZP_04940690.1| Glycine cleavage system transcriptional activator [Burkholderia
           cenocepacia PC184]
 gi|124872145|gb|EAY63861.1| Glycine cleavage system transcriptional activator [Burkholderia
           cenocepacia PC184]
          Length = 294

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 11/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S+I ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              V  +++  + EL +S   P G+LR++  TI     LL   L +F+  YP+I++ +  
Sbjct: 69  CRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIG---TLLLPVLADFMAAYPEIELDIDF 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  +  D  +R   P   S L  R L     H  A+P YL+    P +  +L  
Sbjct: 126 SDRIVDVIDEGFDVVLRTGHPTD-SRLSSRLLGHFRQHLVASPDYLERHGAPRTPADLAL 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  + +    P   +   W     R    P +    V N+  + + + + G GIA LP++
Sbjct: 185 HRCLHY--RFPSSGKLEIWPLRAPRAGTPPEVPVSMVSNNAETRLCFALRGLGIACLPEF 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+D   +  L  +++D +      Y  +P       KL+AF +++
Sbjct: 243 FVRDTLADGRLRAVLDDHVASRTPFYVLWPSGRHPLPKLRAFVDYM 288


>gi|307307399|ref|ZP_07587135.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307321897|ref|ZP_07601281.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306892456|gb|EFN23258.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306901913|gb|EFN32513.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 299

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 136/290 (46%), Gaps = 8/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +RVF  VA+  SFT AA QL ++  +++R +S LE  +G++L  R  R ++LT  G
Sbjct: 3   DLSDIRVFLAVAQQRSFTAAARQLSMTPPTVTRAVSALERSLGVQLLLRTTRQVSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        +  + +  + +L+E     +G +RI   + LGQ LL   +  F   +P + 
Sbjct: 63  AVYAARVEPLIRQFDQVRDDLREEQGDVAGLIRINAPLSLGQQLLPDIVSGFRAEHPQVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ IDI  +  D A+R+ +  +  S I RK+  +     A+P YL     P + 
Sbjct: 123 VSLSLTDRFIDIVSERFDLALRVSEAPRDRSTIWRKVCRVRRILVASPGYLAIFGTPETP 182

Query: 184 QELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  I +  + I +  E  N   T     G+     L  N+   I +    G G+A
Sbjct: 183 DDLSRHGCIAYDEEAISETWELTNGGRTRKALAGK----VLAANNGELIAKLVEDGQGLA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LLP +IV D      L +++ +   P   +   YP   K   ++  F +F
Sbjct: 239 LLPHFIVGDALARGALKQVLAEWEPPELWLTLYYPPYEKLPMRVARFSDF 288


>gi|288960625|ref|YP_003450965.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912933|dbj|BAI74421.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 309

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 132/293 (45%), Gaps = 14/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L VF  +A   + + AA+ L +S S +SR ++ LE  +G++L  R  R L LT +G 
Sbjct: 4   FTELEVFTKIAEEANLSRAADALGISVSGVSRHLASLENRLGVRLVQRTTRQLYLTPEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E+   +   +  +     +P G LRI  ++  G   L   ++EF   +P +QI
Sbjct: 64  SFAANAREILSTMREAEASVSMVVAQPRGTLRIGASLSFGLLHLMPVIREFRARHPLVQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + N+  D+     D AIR R+    SS+  RKL        A+P YL+    P   +
Sbjct: 124 DLKISNRYQDLVESGLDIAIRTRRVEMDSSVTIRKLAETRRLIAASPDYLRERGMPAEPK 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240
           +L KH+L+ +        +D + L+      GE    P    +  N    + Q  + GSG
Sbjct: 184 DLSKHDLLLY-----SLADDPDHLSLARN--GELVRIPLTGQMICNDGQILRQAALDGSG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I + P YIV  +     LVR++ D   P  T+   +P       + + F N +
Sbjct: 237 IIIQPAYIVHADIKAGRLVRVLPDWELPRLTMNLAFPSRTHLPARTRLFINAL 289


>gi|254506674|ref|ZP_05118814.1| transcriptional regulator, LysR family protein [Vibrio
           parahaemolyticus 16]
 gi|219550255|gb|EED27240.1| transcriptional regulator, LysR family protein [Vibrio
           parahaemolyticus 16]
          Length = 312

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 133/289 (46%), Gaps = 10/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++  +F  VA+  SF+ AA+QL +S+S +S QI  LE E+   L  R  R + LT  G 
Sbjct: 8   FERYALFSEVAKQLSFSKAADQLGISRSYLSSQIQELEQELETSLLIRSTRSVRLTSAGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           K+      V   +   + EL  +  + +G LRI          L    +EF  L+P I+ 
Sbjct: 68  KILTKMQGVNASILQLEKELDHTKSEVTGALRITAPTIFSHRFLINICREFQALHPQIEF 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +     D++    D AIR        +++ ++L++      A+P YL+    P   +
Sbjct: 128 DLDIGYTREDLTKSNFDLAIRATNS-PPENMVAKRLMSYQHICCASPAYLEQNGRPQHPE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN ++   L      D N    +D          + +N  L +++    G G+  +
Sbjct: 187 DLKQHNCLSDPHLTHWSFSDGNNTIVIDTD------GDMFINDNLLLLEAAKQGKGVIKM 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY+V+   DN  L+RI++        +Y  YP  L+ + KL AF  F+
Sbjct: 241 PDYLVQPAIDNGELIRILDGYFIVESGIYLIYPPELRGSTKLSAFTEFV 289


>gi|89093632|ref|ZP_01166579.1| transcriptional regulator [Oceanospirillum sp. MED92]
 gi|89082028|gb|EAR61253.1| transcriptional regulator [Oceanospirillum sp. MED92]
          Length = 296

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 142/294 (48%), Gaps = 15/294 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + + +F  V    SFT AAE+L + +S+ISR+I+ LE E+G++L  R  R L++T +
Sbjct: 1   MNLNDVHLFIQVIEHNSFTSAAEKLGIQKSTISRRIAQLEDELGVRLLNRTTRKLSMTNE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    +  +LE  +  +     +P G+LRI    +LG  ++   +  F+  YP I
Sbjct: 61  GEDLFKRCRPLLEELENVEHSVTSRQSEPKGRLRITMPPELGIFIMNDAVSSFIKRYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI + L  + +D+  +  D A+R+   +  SSLI RK+   H H YA+  YL    EP +
Sbjct: 121 QIDIELSVRVVDLVEEGIDLALRV-GDLSDSSLIARKISDAHAHLYASQDYLDKYGEPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +L  H  I     I     D+   NW     +P+  P    ++ N+        + G 
Sbjct: 180 PDDLINHQCIG----IKLNSTDWVFENW--NDGKPV--PVNFRIRANNLTFCKDMLLNGL 231

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P+   ++      + +I+ +  TP+  ++  YP       K++ F + I
Sbjct: 232 GIGRIPNGFFEEELKTGEVKQILTEYRTPTVGIHALYPSRRHLNPKVRLFIDHI 285


>gi|330818692|ref|YP_004362397.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327371085|gb|AEA62441.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 352

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 133/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRYPKVIPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P   + L
Sbjct: 126 TLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEQHGVPTHPEHL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+    V   N+   + Q+ +LG GIA+
Sbjct: 186 MEHPSLSLPS------EYWGDERVFTGPDGEVRVRPTNVIVANNTEMLRQFALLGMGIAM 239

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGGDTARGKLVRLLPDYRLPQVEINVAYPSRRHLPAKVRTF 285


>gi|269104823|ref|ZP_06157519.1| transcriptional regulators LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161463|gb|EEZ39960.1| transcriptional regulators LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 300

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 1/190 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V ++GSF+    +L+ SQ++IS++++ LE E+G+KL  R++R L LT  G++  
Sbjct: 7   MRAFVRVVQTGSFSATGRELNTSQTAISKKVAALEKEIGVKLLTRNSRELALTPSGTEYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +   +E    P G LRI+  I   + +L   L EF  LYP+I I L+
Sbjct: 67  NKCVAILGEIDEAEASAREDVAVPKGVLRISAPIAFSRLVLASLLSEFNSLYPEISIDLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+     D AIR R  ++ S+LI R L    +  +A+P YL     P   ++L 
Sbjct: 127 ASDQHVDLISSGVDVAIRARN-LEDSTLIARHLFDNVLMLFASPDYLAKNGTPNKPEDLL 185

Query: 188 KHNLITFGDL 197
            HN + +  L
Sbjct: 186 DHNCLVYSRL 195


>gi|126732239|ref|ZP_01748040.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
 gi|126707321|gb|EBA06386.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
          Length = 298

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 129/285 (45%), Gaps = 9/285 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW++ R F V A  GS + AA  L ++Q ++ RQ++ LE E+G+ LF R  RGL LT
Sbjct: 6   VTFDWNRARAFLVTAEEGSLSAAARALGMTQPTLGRQVTALEEELGVVLFERVGRGLVLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L      +        +     +   SG + IA        LL   LK    + P
Sbjct: 66  ESGTRLVEHVRAMGEAAVAVSLAATGQATDVSGPVAIAAPELYAMWLLPPVLKRLAEVAP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++++  N+  D+    AD AIR   P Q   LI ++L       + +P Y  +  E 
Sbjct: 126 GIRVEVVSSNRMSDLKRREADIAIRNAAPDQ-PDLIGKRLTDDTAGLFCSPDYAASLGEV 184

Query: 181 LSIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               ELDK   I F +  P         +A  D   G      L+  S+    +    G 
Sbjct: 185 RGPAELDKARFIGFEENAPFVAALTQRGVAVTDTSFG------LRTTSHAVHWEVARQGL 238

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           GI + P  +   +P LV+++ +V T  + V+      LK + +++
Sbjct: 239 GIGIGPVTLGSGDPLLVQVLPEV-TFDYPVWLVAHRELKTSPRVR 282


>gi|116050005|ref|YP_791182.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218891987|ref|YP_002440854.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|115585226|gb|ABJ11241.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218772213|emb|CAW27992.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 300

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 1/195 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +++   VA + SFT AA  L L+QS +SR I  LE E+G++L +R  R ++LT  
Sbjct: 1   MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  +LE  +  L +    PSG L+I T   LG+ ++   L+E    YP +
Sbjct: 61  GQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRRYPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI+  + ++ +D++ +  D A+RL + +    LI R L  +     A+P YL++   P  
Sbjct: 121 QIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRSHGTPER 179

Query: 183 IQELDKHNLITFGDL 197
           +++L  HN  T  DL
Sbjct: 180 LEQLAGHNCPTVRDL 194


>gi|288960878|ref|YP_003451217.1| uncharacterized HTH-type transcriptional regulator [Azospirillum
           sp. B510]
 gi|288913186|dbj|BAI74673.1| uncharacterized HTH-type transcriptional regulator [Azospirillum
           sp. B510]
          Length = 314

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 11/288 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD LR    VAR GS + AA  L ++ S++ R+++ LE  +G +LF +   G  LT  G
Sbjct: 6   NWDDLRYLLAVARHGSLSAAARALGVNHSTVLRRVTALEQAMGARLFDKLPGGYVLTTAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++ RV  ++   L      L  S  + SG LR+ T   L   +L  ++  F   +PD++
Sbjct: 66  DEMQRVAQKMEEDLAAANRLLSGSDTRISGSLRVTTLDILTLYILPRHIAAFRRRHPDLR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+     + ++   AD AIR        +L+ R +  +   AY A  YL+   +   I
Sbjct: 126 IDLVAAEASLSLTRREADVAIRATTS-PPENLVGRAVSGLAFAAYGAVAYLERTGD---I 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
             L++H  +     + +     N     +R +  P  S   +VNS    ++    G G+ 
Sbjct: 182 GGLERHPWVG----LDESFAHTNLAHWTERTV--PAASVRYRVNSVAGAVEAVRAGIGLG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP  +V  +P   RI + +      ++    E L++ G+++AF +F+
Sbjct: 236 LLPCGVVDGDPAFRRIGDPIPEADTKLWLLTHEDLRHMGRVRAFLDFM 283


>gi|209516608|ref|ZP_03265461.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209502883|gb|EEA02886.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 302

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 20/272 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ +RVF  + R GS + AA  L ++ ++ISR++  LE  +G KL  R   G  LT  
Sbjct: 9   LDWEDVRVFVALVRYGSLSAAARALTVTHATISRRVQSLEKSLGAKLVERRPNGYVLTPA 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+++  V  E+  ++  +++    +   P G +R+     L Q  L   L    +L+P +
Sbjct: 69  GTEILSVAREM--EVSASKLMRGGADDTPRGLVRVNAPPSLAQGFLAEPLAALTVLHPSL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCREP 180
            I L  D + + +    AD A+R  +  + S +I + LVT     YA+  +LK     EP
Sbjct: 127 DIDLSSDFRAVGLERREADIAVRFGQ-AKDSDVIAKLLVTAGFGFYASAQWLKRIEAGEP 185

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            +    D+ N           + +  WLA        PR  +  + NS+++       G+
Sbjct: 186 PTFVGFDEAN---------ASLPEAAWLAQE-----FPRARTAFRGNSHMTQAAAARSGA 231

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271
           G+ALLPD++ +    L++ M +   PS  ++ 
Sbjct: 232 GVALLPDFVGRHGDGLIKCMLEHTAPSRELWL 263


>gi|91778619|ref|YP_553827.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691279|gb|ABE34477.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 313

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 147/294 (50%), Gaps = 11/294 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LRVF  VAR  SF+ AAE L +S + +S++I+ LET +G +L +R  R + +TE
Sbjct: 6   SPDLGDLRVFCEVARKSSFSAAAEALSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +++    ++   ++    ++  +   P GKLRI+++   G+  +   L  F   YP 
Sbjct: 66  AGERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSGRYPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ +D++ +  D  +R+   I +  LI R+L + H    A+P YL+    P 
Sbjct: 126 LSVRLDLFDRLVDVAGEGFDLDVRIGDEI-APHLIARRLASNHRVLCASPGYLERHGAPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + +L  H  +     I +    F  W  TV       +++  L  N     +++ + G 
Sbjct: 185 QLADLSSHACLA----IKERDHPFGLWRLTVRGETASIKVTGPLSTNHGEVAVEWALAGR 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI L   + V+   ++  L +++ +V  P+  ++  YP  L  + K++   +F+
Sbjct: 241 GIVLRSMWDVRPLLESGQLQQVLPEVTQPA-NLWAVYPARLAQSAKVRVCVDFL 293


>gi|330957610|gb|EGH57870.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 302

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 139/285 (48%), Gaps = 9/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +GSFT AAE+L+L+ S++S+ ++ LE  +G++LF R  R L LTE+G+  +
Sbjct: 10  IETFVAVANAGSFTAAAERLNLTNSALSKSVARLENRLGMRLFERTTRSLALTEEGAAYY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V + +  +LE  +  L     +P+G+LRI      G+  +   + EF   +P ++ ++ 
Sbjct: 70  VVCTRMLAELEDAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILEFAGQHPKLRPRVT 129

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +D+  D  D A+R+    +  + +  R L T  +   AAP YL     P + ++L
Sbjct: 130 FTDRFVDLLEDGIDLAVRIGGSQVWPAGVAHRYLGTERVIFCAAPAYLHRHGTPETFEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS--GIALL 244
             H  I FG           WL   D+   E R    ++       Q   + S  GIA L
Sbjct: 190 ADHACILFGR---GDGSSSPWLFVDDQGQAEARAVEARLVIGNGEAQVAAVKSAWGIAQL 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +++KD      LV I+  + T    ++  +P + ++  K++A 
Sbjct: 247 ATWLIKDQLQRGELVEILPQLATEGLALHLAWPRSRESLPKVQAL 291


>gi|307728138|ref|YP_003905362.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307582673|gb|ADN56071.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 367

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  L +S +  +R ++ LE  +G +L  R  R L+LTE G    
Sbjct: 7   MRVFVKVADLGSFARAASALDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP +   + 
Sbjct: 67  ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P   + L 
Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGTPTRPEHLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  ++         E +        P GE R+   + +  N+   + Q+ +LG GIA+L
Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|107101483|ref|ZP_01365401.1| hypothetical protein PaerPA_01002526 [Pseudomonas aeruginosa PACS2]
 gi|254240489|ref|ZP_04933811.1| hypothetical protein PA2G_01141 [Pseudomonas aeruginosa 2192]
 gi|126193867|gb|EAZ57930.1| hypothetical protein PA2G_01141 [Pseudomonas aeruginosa 2192]
          Length = 300

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 104/195 (53%), Gaps = 1/195 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +++   VA + SFT AA  L L+QS +SR I  LE E+G++L +R  R ++LT  
Sbjct: 1   MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  +LE  +  L +    PSG L+I T   LG+ ++   L+E    YP +
Sbjct: 61  GQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRRYPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI+  + ++ +D++ +  D A+RL + +    LI R L  +     A+P YL+    P  
Sbjct: 121 QIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRGHGTPER 179

Query: 183 IQELDKHNLITFGDL 197
           +++L  HN  T  DL
Sbjct: 180 LEQLAGHNCPTVRDL 194


>gi|254523576|ref|ZP_05135631.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721167|gb|EED39692.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 285

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 134/294 (45%), Gaps = 24/294 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  VA  GSFT AAEQL +S   + + I  LE  +G  L  R+ R   LTE GS   
Sbjct: 1   MQAFVAVAERGSFTCAAEQLQVSAVMVGKYIQQLEAHLGTALLQRNTRRQRLTEAGSAYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V  +++  + ++    V+P G LR++     G  +L  +L   L   P + I+L 
Sbjct: 61  AGCRQVLEQVQQAEADVAGLQVQPRGLLRVSAPSTWGSCVLAPHLAALLRAQPQLNIELD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  D  D AIR+  P+ S  ++ R L    M   AAP YL+    P +  +L 
Sbjct: 121 LSNRRVDLIEDGFDVAIRV-GPLPSQEVVARPLPPYAMSLCAAPSYLRRRGTPRTPADLQ 179

Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +H+          C+    W       LA  ++   E R++C   N  +++ +  V G+G
Sbjct: 180 EHD----------CLSHLAWRGGHGWQLANGEQVDWEARLTC---NDGVALREAAVAGAG 226

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + L P  ++        L  ++ D +     ++  Y    +   +L+ F +F+ 
Sbjct: 227 LVLQPTALLAGEIAAGRLKPLLRDYLPEPRPMHLIYLPDRRPRPRLQCFVDFVM 280


>gi|194291232|ref|YP_002007139.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193225067|emb|CAQ71078.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 313

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 136/292 (46%), Gaps = 14/292 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V   GSF  AA+QL +S + ++R ++ LE+ +G +L  R  R L+LT+ G   
Sbjct: 6   SMRVFSKVVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTDAGETY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   +E  +  +   S   SG LR+ T +  G +LL   L  F  LYPD+   +
Sbjct: 66  LQRCQQILEDVEEAESVVTARSQSLSGTLRLVTPVMFGLHLLPELLSRFQQLYPDVVFDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL ++++DI  +  D A+ L      S L+ R L++  +   A+P Y+          EL
Sbjct: 126 ILSDRNVDIVEEGRDVAVMLSDLGLGSHLVARPLLSAEVILCASPGYVAAHAPIRHAHEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGIA 242
             H  I     +P    ++  L     P GE     R   L  N+ L+  Q  +   G+A
Sbjct: 186 SHHRCIAMR--LPNAEHEWTLLG----PEGEVTVPIRPGLLCSNAELA-HQAALADMGVA 238

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +L  Y+ + N +   LVR++     P   V   YP       K++AF +F+ 
Sbjct: 239 MLSSYLARPNIDAGRLVRVLPQYQLPRRDVSVVYPSRKFLPTKVRAFIDFLL 290


>gi|83644160|ref|YP_432595.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632203|gb|ABC28170.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 329

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++++++  V  +GS T AA+ L +++S++SR+++ LE  +G++L  R  R LTLTE G 
Sbjct: 4   FEEMQIYAKVVETGSITRAAQVLDIAKSAVSRRLADLEARLGVQLLVRTTRKLTLTETGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L   +  +       SGKL+IA     G   L     +F+ ++P++  
Sbjct: 64  SYYERCLRLLEDLAELEESVTSEHKSLSGKLKIAAPFTFGMMHLGCVFNDFMQMHPNLNF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  +++ +DI  +  D AIR+ + +  S+LI R +  IH    A+P YL+   EP + +
Sbjct: 124 DINFNDRQVDIVQEGYDLAIRIGR-LVDSTLIARPICKIHTVICASPAYLEKFGEPKTPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H +I + +L       +N  +        P    LQ N+   + Q  V G GI   
Sbjct: 183 ELTQHRVIHYSNLPNSIWRFWNSKSECIEVNVNP---WLQANAGDYLRQAAVNGYGIVTQ 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P++I+     +  L  I+ D        Y  YP     + +++ F +++ 
Sbjct: 240 PNFILYKEIASGALKPILTDYQLVEANAYLIYPHTRHLSHRVRTFVDYVL 289


>gi|33599427|ref|NP_886987.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
 gi|33567023|emb|CAE30936.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
          Length = 340

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 112/202 (55%), Gaps = 2/202 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  V  + SFT AA+ L L +++++  I GLE  +G++L  R  R ++LT  G+
Sbjct: 4   FQAMQVFVRVVEANSFTRAADALVLPRTTVTTVIQGLERHLGVRLLNRTTRRISLTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++  + +  ++E T+   Q+++ +P G+LR+     +G+ +L   L EF   YPDI++
Sbjct: 64  AYYKHATRILAEVEETEACFQDAAARPQGRLRVDVPPCIGRLVLIPALCEFHTRYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC IR  + ++ SSL+ R++ T      AAP YL     P ++Q
Sbjct: 124 VIGMGDRRVDLVQEAVDCVIRSGE-LEDSSLVARRIGTFQTLTCAAPSYLARKGMPHTLQ 182

Query: 185 ELDKHNLITFGDLIPK-CMEDF 205
            L +H  + +     + C  DF
Sbjct: 183 ALAEHQAVHYFSATGRNCSWDF 204


>gi|90422373|ref|YP_530743.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104387|gb|ABD86424.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 313

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 143/292 (48%), Gaps = 9/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F+ V  + S + AA +L + +S+ISR+I  LE + G  LF +  R LT T+ 
Sbjct: 5   LDLNALLLFFEVTNARSISAAAAKLGIPKSTISRKIQFLEDQTGATLFRKGCRKLTTTDI 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +  ++E   +       +  G LR++  +D G   L   +  F + YPDI
Sbjct: 65  GQTLYEHCERIAAEIEEAGLGTARMQTELRGTLRVSMPVDFGIGWLSSAIAAFAVTYPDI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +  +++ +D++++  D A++L  P+  +    R L +I    YA+P +L+    PL+
Sbjct: 125 HLVIDANSRWVDVTVEPYDVAVQL-GPLPQTQGGTRPLASITRGVYASPEFLRRAGSPLN 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GI 241
           I +  + + +       + + +F             RI+     +++ I +  V+G  G+
Sbjct: 184 IDDFGRFDCVVTEHQRAEGVWNFRSAQGAKVINVAGRITV----NHIGIARELVIGGVGL 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP+ + +++     L R++ D  +P+  V   +P   K + +L+ F +F+
Sbjct: 240 GILPNIMCQNDVRAKRLSRVLTDWESPALQVSATFPGKRKESRRLRTFLDFL 291


>gi|71066227|ref|YP_264954.1| LysR family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039212|gb|AAZ19520.1| transcriptional regulator, LysR family [Psychrobacter arcticus
           273-4]
          Length = 288

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 10/256 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA   SFT AA +L +S + +SRQ++ LE  +  KL YR  R ++LTE+G 
Sbjct: 3   WDGISEFVYVAELESFTKAAAKLAISTAQVSRQVTALEERLNTKLLYRTTRKVSLTEEGR 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +  +     KP G++ +   +  G+  L   + +F++ Y DI++
Sbjct: 63  VFYQHCRSILDGLDAAEQAVSNLQSKPQGRINLTAPVTYGEQQLLPLVNDFMVQYSDIEV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+ ID+     D AIR+ K +  S+++ +KL        AAP Y K    P ++ 
Sbjct: 123 TAFLSNQKIDLIEGGYDLAIRIGK-LSDSTMMAKKLSHRTNFVCAAPTYFKKYGRPKTLD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL +++ +  G L      D+ W    +      R+S  ++ NS  S++   + G GI  
Sbjct: 182 ELSQYSCL-LGTL------DY-WHFKEEDTERNIRVSGKIRYNSGYSLVDAALKGLGIVQ 233

Query: 244 LPDYIVKDNPNLVRIM 259
           LPDY V+ +    R+M
Sbjct: 234 LPDYYVQKHLVTGRLM 249


>gi|317491096|ref|ZP_07949532.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920643|gb|EFV41966.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 297

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 133/289 (46%), Gaps = 10/289 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L +SQS++S  I GLE  + I+L  R  R +  TE G
Sbjct: 5   NFNDLISFLVVARERSFTKAAAKLGVSQSALSHSIRGLEERLDIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL       + ++E+    L++    P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  EKLATSLEPRFAEIESELDALRDMRDTPAGNIRITAGEHAVDSVLWPVLKPFLASYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++DN   DI     D  IRL + +    +  R    + M    +P Y +    P + 
Sbjct: 125 VEIVVDNTLTDIVSGRFDAGIRLGEQVAKDMIAVRIGPDMSMAVVGSPSYFEQYGTPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           Q+L  H  I     +P     + W    ++   E R+     L  NS    +    LG G
Sbjct: 185 QDLQNHRCINM--RLPTMGGLYAW--EFEKEGQELRVRVDGQLIFNSLRQRIDAANLGFG 240

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA +P+  VK+   +  LV+++++        Y  YP   ++T     F
Sbjct: 241 IAYVPEDSVKNELADGRLVQVLKEWCNTFPGYYLYYPSRKQHTTAFSLF 289


>gi|270158678|ref|ZP_06187335.1| LysR family transcriptional regulator [Legionella longbeachae
           D-4968]
 gi|289166511|ref|YP_003456649.1| transcriptional regulators, LysR family [Legionella longbeachae
           NSW150]
 gi|269990703|gb|EEZ96957.1| LysR family transcriptional regulator [Legionella longbeachae
           D-4968]
 gi|288859684|emb|CBJ13654.1| putative transcriptional regulators, LysR family [Legionella
           longbeachae NSW150]
          Length = 304

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 132/275 (48%), Gaps = 20/275 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +F  V + G F+HAA  L LS   +SR+I+ LE+++G+ L  R  R L LT +G  
Sbjct: 5   DDTALFVAVVQQGGFSHAARHLGLSSGLVSRRIAHLESKLGVTLLKRTTRQLHLTPEGKL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             + +  +  +L      +Q S+ KP G +RI+     G++ L   L +FL  + DI+I 
Sbjct: 65  FWQHSYRIQQELNEALSLIQSSAKKPKGLIRISAPSYFGRHYLTPLLSQFLDDFQDIKID 124

Query: 126 LILDNKDIDISMDYADCAIRL------RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           L+LDN+ +D+  +  D  IR          ++ SSL  R +    +  YA+  YL    E
Sbjct: 125 LVLDNQKLDLVKEQLDLVIRGAGYMDNETMLKDSSLQMRLITKEKICLYASTEYLLKHGE 184

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYC 235
           P  I EL  H +I+  +L     E +N+  T D   G    EP+ +C  ++S L     C
Sbjct: 185 PKLIDELLNHRIISCMNLNHINQEKWNY--TYDNKHGSVTFEPQFNCNDIDSALIA---C 239

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVY 270
           V G GI    D+  K     + + +  + P  T Y
Sbjct: 240 VNGCGIGKFTDFNAK-----IALQQGQLRPILTKY 269


>gi|149909493|ref|ZP_01898147.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149807398|gb|EDM67349.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 294

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 134/289 (46%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  V  +GS + A+    +  SSISRQ++ LE E+GI+L  R  R + LTE GS  
Sbjct: 6   RLHYFNCVVETGSISAASRVFDVQPSSISRQLAALEAELGIRLLNRTTRNIGLTEAGSTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +  +L+     + +    P G L+I+ T+  G+  +   +  F+  YPD+ I+L
Sbjct: 66  YYYSQRIVAELDEANRAVNDLQQSPKGNLKISMTVGFGEACVLPLVPGFMKAYPDVNIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  + +D+  D  D AIR  + +  S+LI  KL        A P YL +   P +  +L
Sbjct: 126 ELSERVVDLVEDNVDIAIRSGR-LPDSNLIASKLADNDFLLCATPQYLADNGTPETPDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
              N I +G    +     +W    D+P        L VNS     Q  +  +G+ L   
Sbjct: 185 INFNCICYGYSGWR-----DWFLMDDKPRKLAITEGLIVNSVNGQKQLVLNHAGLVLAAR 239

Query: 247 YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + V +  N  R+++ +   SF+ Y    E L +T  L   R+ I  K R
Sbjct: 240 WAVNNELNNGRLVQVLAQHSFSPY----ERLSSTYALYLKRDLISPKIR 284


>gi|254470959|ref|ZP_05084362.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211960101|gb|EEA95298.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 296

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 141/291 (48%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V    S T A+ +  L  SSISRQI+ LE E+G++L  R+ R ++ TE G + 
Sbjct: 4   RIAYFNAVMEEQSITEASRRFDLQPSSISRQIASLEEELGVRLLNRNTRKVSPTEAGLRF 63

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  + ++   L+  +  + +   +P G L I++T+  G+ ++   +  F+  YP ++I++
Sbjct: 64  YSYSRQILSDLDEAKRAISDLQQEPQGTLTISSTVGFGETVILPLVPAFMSEYPKLKIKV 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  + +D+  +  D AIR    +  SSLI R L+  +    A+P YLK    P + Q+L
Sbjct: 124 ELTERVVDLIEEGVDVAIR-SGSLADSSLIARHLLPNNFIICASPTYLKQAGTPETPQDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            KH  I +G          NW    D+         L+ NS     Q  +   G+AL+P 
Sbjct: 183 TKHRAIKYG-----YAGWANWFQISDKIERLTLSDTLETNSVNGQKQLILNHGGLALIPH 237

Query: 247 YIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKN---TGKLKAFRNFI 290
           + V+       LV+++ D+  +P       Y   LK    + K+K F ++I
Sbjct: 238 WAVRRELATGELVQVLPDLTFSPHGQQTSTYAIYLKRELISPKIKVFMDYI 288


>gi|167736554|ref|ZP_02409328.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
          Length = 340

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LR+   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPTHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|187924466|ref|YP_001896108.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715660|gb|ACD16884.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 300

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 135/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QIETFVTVAAKGSLSAAASAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H ++  +  +    VK SG LR++     G+  +   +  F + +PD+ I L
Sbjct: 66  LEDCQRIIHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P S+ +L
Sbjct: 126 DLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPSYLSRRGAPHSLADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
             HN +  G       +   W+      +   ++S  ++ +    + ++C+ G G+A   
Sbjct: 185 AHHNCLALG---ASANQQRGWMFQQGDKVVSIKVSGTMECSDGAVLHEWCLEGYGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGTDIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|121593441|ref|YP_985337.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120605521|gb|ABM41261.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 304

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 136/285 (47%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V  +G+FT AA+ L L + ++++ +  LE  + +KL  R  R +T+T  G+  +
Sbjct: 7   MRIFARVVEAGTFTRAADSLQLPKGTVTKHVQALEERLRVKLLNRTTRRVTVTADGAAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +    +  +  + +    P G+LR+     + + L+  N  +F   YP+IQ+ L 
Sbjct: 67  DRTVRLLADFDDIEASMSQERANPRGRLRVDVGSSVARLLIVPNPAQFQERYPNIQMDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR  + +   SL+ R++  +     AAP YL+    P    +L+
Sbjct: 127 VSDRTVDLIGDNVDCVIRGGE-LADQSLVARRIGNLEFITVAAPAYLERFGVPAHPLDLE 185

Query: 188 K--HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +    +I F  +  +    +F     V    G   ++  + N+YL+ +   V G G+  +
Sbjct: 186 RSHRTVIYFSPVSARRYPLEFRKDGEVIETSGPSHLAVNESNAYLNAL---VAGQGVGQI 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +  +   +   LVR++ D   P   VY  YP     + K++AF
Sbjct: 243 TTFQAQQHFERGELVRVLPDWSHPLLPVYVVYPPNRHLSAKVRAF 287


>gi|88859488|ref|ZP_01134128.1| transcriptional regulator lysR family protein [Pseudoalteromonas
           tunicata D2]
 gi|88818505|gb|EAR28320.1| transcriptional regulator lysR family protein [Pseudoalteromonas
           tunicata D2]
          Length = 296

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 133/284 (46%), Gaps = 11/284 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V + GS + AA  L  +Q ++ R I+ LE  + I LF R   GLT TE  +
Sbjct: 7   WELYRSFLRVMQEGSLSAAARALGSTQPTVGRHIAQLERALNITLFIRAQGGLTPTEAAN 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    +E+    E  +           G +RI T+  +G  +L     E + L+P I +
Sbjct: 67  ALLLPATEMASLAEAMERVACSQGDGIQGTVRITTSDVIGTEILPTIFAEMVKLFPKITL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L +K  D+    AD AIRL +P Q + LI R++  I +  +A   YLK    P ++ 
Sbjct: 127 ELVLSDKAQDLLNREADIAIRLFRPTQ-TQLIARRIGNIDVGFFAHKEYLKTQGTPTTLA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSGI 241
           +L++H LI F  +        N++ T ++ +    +    C + +S ++ +     G+GI
Sbjct: 186 DLNEHRLIGFDKVT-------NYIRTAEKTLPFSVDKNNFCFRTDSNVAQLALIRAGAGI 238

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            +    +   + NLVR++ D        +    E L+ +   KA
Sbjct: 239 GICQVGLASQDKNLVRLLSDDFNFEMDTWVTMHEDLRKSPACKA 282


>gi|70730282|ref|YP_260021.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344581|gb|AAY92187.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 302

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 143/293 (48%), Gaps = 12/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+VF  V +SGS   A E+L LS S++ + ++ LE  +G++L  R  R ++LT++G
Sbjct: 3   NLNGLQVFVSVVQSGSLVGAGERLGLSASAVGKALARLEQRLGVRLLNRSTRRISLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +     +  +++  + EL   S KP G+LR++    +G  +L   L EF   YPDI+
Sbjct: 63  ALFYERGQRIVAEVQEAEAELARISDKPRGRLRVSLPA-IGYRMLLPILPEFSARYPDIE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ ID+  +  D  IR  + +  S L  R L         AP Y      P + 
Sbjct: 122 LDLDFNDRLIDVIAEGVDAVIRSGE-LPDSQLKSRNLGPFGFVLVGAPGYFARRGTPRTP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240
           ++L++H  + +    P       W  ++  P G P +   S L  N+  S++     G G
Sbjct: 181 RDLEQHACLRYK--FPGGSLLQQW--SLRLPDGAPPLVLGSALTSNNLESLIHASTQGLG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +P+++V     + +LV +++D           +P +     KL+ F +F+
Sbjct: 237 IAYVPEFVVCGALADGSLVAVLDDYQQERGKFSILWPSSRHLLPKLRVFVDFL 289


>gi|167585072|ref|ZP_02377460.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 349

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTEQFPKVVPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   + L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPTHPEHL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+    V   N+   + Q+ +LG G+A+
Sbjct: 186 AEHPGLSLPS------EYWGDDRVFTGPDGEVRVRPTNVVVANNTAMLRQFALLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|262404307|ref|ZP_06080862.1| transcriptional regulator LysR family [Vibrio sp. RC586]
 gi|262349339|gb|EEY98477.1| transcriptional regulator LysR family [Vibrio sp. RC586]
          Length = 297

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 12/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  ++ +F  V   GSFT A E L +++S +S QI+ LE  + ++L  R  R ++LT +G
Sbjct: 4   ELKRIAIFNKVVECGSFTSAGESLGMTKSKVSEQITTLEKNLNVRLLNRTTRKVSLTTEG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++ +  +    E     +   + + SG +RI TTID+G  LL   L+EF  LYP ++
Sbjct: 64  GTFYQYSHGLLGMAEEALYSVNHLASEVSGIIRIGTTIDVGTFLLAPLLEEFYQLYPQVK 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L++   D      D  IR+ + + SSSL+ R +    +  YA+  YL        I
Sbjct: 124 FDLQLEDGLQDFVESNLDIVIRMGE-LTSSSLVGRVIAPFEIGLYASQSYLDKSPPLEKI 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGS 239
           ++L  H+ I    L   C+   N   T+  P GE     L+     N+ L++M     G 
Sbjct: 183 EDLQHHDWIYLTRL---CLP--NHTMTLVNPEGERHDVKLEPQHISNAPLAVMAMVQQGL 237

Query: 240 GIALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI  +  +++     P LVR+  D    S T+   YP       +++ F +++    R
Sbjct: 238 GIGAIAHFLINKVPGPALVRLFPDFYQLSTTMNILYPSRKNLPPRVRLFIDYLVESLR 295


>gi|167725586|ref|ZP_02408822.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 331

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LR+   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPTHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|167616306|ref|ZP_02384941.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 299

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 132/291 (45%), Gaps = 16/291 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFIEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    +     + +    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLADHVATVVAKPDDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNEVD-PSLIARRLGTCRSVLCASPGYLAEHGAPRQPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++  + G GIA
Sbjct: 185 ARHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAAIAGGGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP +   +      L R++ D   P   +Y  Y    +    ++A  +F+
Sbjct: 237 LLPTFAAAEPIRAGTLARVLPDCAAPDLGIYAVYASRRQMPLAMRAMIDFL 287


>gi|237811080|ref|YP_002895531.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|237503088|gb|ACQ95406.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 294

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++    L   +L   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W    A  D  +  P+   +  N+  + + + + G G+A +PD
Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPQ--SMICNNVETRVCFALRGRGLACVPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+D   +  L  +++  I    T +  +P     + KL+AF +FI
Sbjct: 242 FAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288


>gi|33595145|ref|NP_882788.1| LysR family regulatory protein [Bordetella parapertussis 12822]
 gi|33565222|emb|CAE36020.1| LysR family regulatory protein [Bordetella parapertussis]
          Length = 340

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 112/202 (55%), Gaps = 2/202 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  V  + SFT AA+ L L +++++  I GLE  +G++L  R  R ++LT  G+
Sbjct: 4   FQAMQVFVRVVEANSFTRAADALVLPRTTVTTVIQGLERHLGVRLLNRTTRRISLTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++  + +  ++E T+   Q+++ +P G+LR+     +G+ +L   L EF   YPDI++
Sbjct: 64  AYYKHATRILAEVEETEACFQDAAARPQGRLRVDVPPCIGRLVLIPALCEFHTRYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC IR  + ++ SSL+ R++ T      AAP YL     P ++Q
Sbjct: 124 VIGMGDRRVDLVQEAVDCVIRSGE-LEDSSLVARRIGTFQTLTCAAPSYLARKGMPHTLQ 182

Query: 185 ELDKHNLITFGDLIPK-CMEDF 205
            L +H  + +     + C  DF
Sbjct: 183 ALAEHQAVHYFSATGRNCSWDF 204


>gi|17548668|ref|NP_522008.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430916|emb|CAD17598.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 292

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 7/247 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++  F  AA+ L +  S++SR+I  LE  +G++L +R  R + LTE G  
Sbjct: 5   NDMALFVEVVKARGFRGAAQALGMPNSTLSRRIGALEKAIGLRLLHRTTRKIELTEAGLI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      +L E   +PSG LR +  +D     L   + EF  LYP I   
Sbjct: 65  YFERCKRIVDEARLAHEQLGELLAQPSGVLRASLPVDFAVTYLAPLIAEFASLYPGINFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D+  +  D AIR+ +P ++S LI R L ++  + YA+P YL+   EP +  +
Sbjct: 125 FDLTPRQVDLVSEPFDVAIRMGEP-ENSQLIARPLASLQANLYASPGYLERSGEPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  +  G L            TV  P+G        +NS   I +   L  GI L+P
Sbjct: 184 LGQHECL--GMLKVGSWTLHEGAHTVTTPVG----GRFMLNSVGMIRRLATLDLGIILVP 237

Query: 246 DYIVKDN 252
           + IV D+
Sbjct: 238 EEIVADD 244


>gi|227819830|ref|YP_002823801.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227338829|gb|ACP23048.1| putative LysR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 299

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 136/290 (46%), Gaps = 8/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +RVF  VA+  SFT AA QL ++  +++R +S LE  +G++L  R  R ++LT  G
Sbjct: 3   DLSDIRVFLAVAQQRSFTAAARQLSMTPPTVTRAVSALEESLGVQLLLRTTRQVSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        +  + +  + +L+E     +G +RI   + +GQ +L   +  F   +P + 
Sbjct: 63  AVYAARVEPLIRQFDQVREDLREEHGDVAGLIRINAPLSIGQQILPDIVSGFRAEFPRVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ IDI  +  D A+R+ +P +  S I RK+  +     A+P +L     P   
Sbjct: 123 VSLSLTDRFIDIVSERFDLALRVSEPPRDKSTIWRKVCRVRRILVASPGHLAAFGTPEMP 182

Query: 184 QELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  I +  + I +  E  N   T     G+     L  N+   I +    G G+A
Sbjct: 183 DDLHRHACIAYDEEAIAESWELTNGGRTRKALAGK----VLAANNGELIARLAEDGQGVA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LLP +IV D      L +++ +   P   +   YP   K   ++  F +F
Sbjct: 239 LLPHFIVDDALSRGTLKQVLAEWEPPELWLTLYYPPYEKLPMRVARFSDF 288


>gi|194367110|ref|YP_002029720.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349914|gb|ACF53037.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 301

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 15/294 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+ R+F  V  S SFT AA+QL L +S++S  I+ LE  +G +L  R  R ++ T  G  
Sbjct: 5   DRFRIFTRVVESASFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVSTTHDGDV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H     +  ++E  +   ++   +P G L+I     +G+ ++   L +F   YP +++ 
Sbjct: 65  FHARCLRLIAEVEDAESLFRQDDAQPIGLLKIDVPSRIGRRIIAPALPDFFARYPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  D  D  +R+   +  SSL+ R L  +     AAP YL+    P    +
Sbjct: 125 LGMTDRAVNLIEDGCDAVLRVGH-LGDSSLVARTLGQLDFVNVAAPSYLREHGVPQHPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +H  + +       +E + W     L T      +P    ++VNS  + +  CV G G
Sbjct: 184 LPQHRAVNYASPTTARVEPWEWQDGSQLRT------QPMPGWVRVNSAEASIACCVAGLG 237

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +P Y V+   +   LV +M   +     V    P       +++ F  ++ 
Sbjct: 238 LLQIPRYDVQAELHAGALVEVMPQYVAQPLPVTLLQPHRQHRAQRVQVFIEWLL 291


>gi|148556135|ref|YP_001263717.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148501325|gb|ABQ69579.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 308

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 13/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA  GSF+ AAE L L+++++S+ IS LE  +   L +R  R L+LTE G
Sbjct: 6   DFEAWAIFAKVAEKGSFSQAAEDLGLAKTTVSKAISRLEERMRTTLLHRTTRKLSLTESG 65

Query: 64  S-KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              L R    +   +      L+E+++ P G +R+A +   G+  L   L  F+  YPDI
Sbjct: 66  RLSLDRALRIMADGVAIEADILEEAAI-PRGLIRVACSTGFGETALAPMLPAFMAAYPDI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +    + +D+  +  D AI++    + SSL   +L+T+     AAP  ++    P  
Sbjct: 125 RLDITFSEQRVDLVAEGYDLAIQIGDNAEDSSLRISRLLTLRRRVTAAPSLIERHGRPRH 184

Query: 183 IQELDKHNLITFGDLIPKCM---EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +L  + +     LIP  +    + ++    D     P    L +NS L +M   + G 
Sbjct: 185 PSDLAHYPM-----LIPSHVPWGREVDFTGPGDEHFHVPVSGALHMNSTLGLMHALLAGV 239

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G + +P+Y   +      LV +  D   PS  +    P       +++A   F+
Sbjct: 240 GASAVPEYFTWEATRDGLLVDLFPDWTIPSSPICIVTPPGRARPARVRALLEFL 293


>gi|157963214|ref|YP_001503248.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848214|gb|ABV88713.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 304

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 139/300 (46%), Gaps = 12/300 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF+ + L  FY VAR GSF  AA++L L+ S IS+ I  LET +  +L  R  R L LTE
Sbjct: 4   SFNLNLLSSFYAVARHGSFAAAADELCLTHSVISKHIKQLETSLQSQLIIRTTRALELTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL-LLYP 120
           +G  L+     +++++   +  + E     SG+L I     L  +       EF+ L YP
Sbjct: 64  EGEFLYSKCQSIFNEVLQVKDFIDEKKRVVSGRLVIKMPSILKHDDGIAKSLEFMHLTYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + ++ D+   D+  +  D A R+ K ++ SS + RK+  I  +  A+P YLK    P
Sbjct: 124 GLMLDIVFDDNLGDLVKEGVDIAFRIGK-LEDSSYLCRKVRDIDTYVVASPEYLKVAGTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L   EL +H  + +      C+   NW           P    L   S   + QY   G 
Sbjct: 183 LHPNELTQHKCLHYS----HCLTGLNWSFKQNGEQFNVPITPALSSMSESMLAQYACKGF 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+    D++     ++  LV +++D  T    +Y  +P A     K ++F N I L  RD
Sbjct: 239 GVTTTLDFVTAKDIESARLVSLLKD-FTWKTELYLVFPYAAVVPLKTRSFINSI-LSTRD 296


>gi|17549367|ref|NP_522707.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431620|emb|CAD18297.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 298

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 15/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF      GSF+ AAE L +S   + + + G+E  +G++L  R  R  +LT+ G   +
Sbjct: 7   MAVFVKAVELGSFSAAAEVLQMSSQLVGKHVQGIEQRLGVRLLNRTTRRQSLTDFGRAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +  ++E  +   +E+   P+GKLRI   +  G + L   L E++  YP++++++ 
Sbjct: 67  ERSKIILAEVEIAESLAEETRAVPTGKLRINAPVSFGMHTLAQRLPEYMKRYPEVEVEMT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ-EL 186
           L N+ +D+  +  D   R+ + +  S LI R L    +   AAP YL+  R PL+   +L
Sbjct: 127 LSNRTVDLINEGYDAVFRVGE-LSDSGLIARPLAPYRLVLCAAPAYLEG-RPPLTTPWDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIAL 243
            +HN + F     +     NW  T D P G    P  S L V+    ++   + G G+ L
Sbjct: 185 RQHNCLGFAYTELRT----NW--TFDGPDGRVVVPVSSRLMVDHGEPLLCAALAGMGVLL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            P  +V+    + +LV ++      +  ++  Y    + T KL++F +F  L
Sbjct: 239 QPLELVRSALADGSLVGVLPQYEPLTRPMHVLYAPDRRVTPKLRSFLDFAVL 290


>gi|254224675|ref|ZP_04918291.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125622738|gb|EAZ51056.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 301

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 136/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P   ++L
Sbjct: 131 DLSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 ADHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|322836467|ref|YP_004215844.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321171020|gb|ADW76717.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 300

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 139/289 (48%), Gaps = 10/289 (3%)

Query: 5   WDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +++L      AR+G   S+T AA  L +S S+IS+ I  LE  +G+ LF R  R L LT 
Sbjct: 7   FERLTGLIAFARAGALGSYTAAARSLTVSPSAISKSIQRLENHLGVTLFARTTRSLVLTA 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +LH    ++    E  +   +    +P+G LRI+ +  +G +++   + +F  +YP+
Sbjct: 67  EGRELHERVLQLLQVAEDIEQLAKRKRAEPAGTLRISASYPIGLHMIAPVIPQFCTIYPN 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L L ++ + +  +  D A+RL   +  S+L+ R+L +  M  YA+P YL  C  P 
Sbjct: 127 VKIDLRLSDRVLSLVDENIDIAVRL-GDLADSNLLSRRLSSYRMGCYASPEYLAQCAPPK 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L  H  +          + F W   V  R I     S + V++   ++   V G+G
Sbjct: 186 HPNDLMGHKTVNL--RYQNTGQLFRWPFQVGGREIEILPSSNVVVDASEVVLASIVAGTG 243

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I +   ++      N  LV ++ D       +   + E+ ++   ++AF
Sbjct: 244 IGMATSFMADSWVKNEKLVPLLTDFTVERHNISALWHESRRSNPAVRAF 292


>gi|187924123|ref|YP_001895765.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715317|gb|ACD16541.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 298

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 128/278 (46%), Gaps = 13/278 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  VA +GSF  AAEQL +S S ++R +S LE  +GI+LF R  R + LTE G+
Sbjct: 5   FQAMQAFVKVADAGSFAQAAEQLGVSTSVVTRHVSSLEKHLGIRLFQRTTRKVVLTEAGA 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  +LE  +     +S + +G LRI          L     E+   +P + +
Sbjct: 65  EYGDGCRLLMAELEEVESRATTASKEVAGDLRIVALGSFSLFRLTPLFAEYQAKFPRVNL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L  K +D+     D  I     I+S SL+ R+L+  H    A+  YL     P +  
Sbjct: 125 RVTLTEKRVDLLEGGFDVGIVTEHMIRSESLVVRRLINSHAVPVASAAYLAQAGHPKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           +L +H +IT     P       W+   +   GE  I   +   VNS +   Q  +   GI
Sbjct: 185 DLARHRVIT----APLDTSPQTWVFD-NGDGGEDSIALDASFTVNSMIMQKQAALGAMGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMED--VITPSFTVYFCYP 274
           ALLP  +V D      L+RI+ED  V+     V   YP
Sbjct: 240 ALLPLEMVDDELRAGTLMRILEDHAVLNGDVAVSLVYP 277


>gi|146339476|ref|YP_001204524.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146192282|emb|CAL76287.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 406

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 139/311 (44%), Gaps = 47/311 (15%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD  R+F  V R+GSF  AAE+L LS +++ R+I   E ++G  LF R   G  LT++G
Sbjct: 82  DWDAARIFLEVVRAGSFRSAAERLTLSINAVRRRIDDFERQIGATLFTRDVHGARLTDEG 141

Query: 64  SKLHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +    V S V  ++E    EL  +    +   SG++R+A T  LG   L   L EF   +
Sbjct: 142 AL---VVSAV-ERMEAASFELLRAGDGLASAASGEVRVAVTEGLGTFWLAPRLVEFQQNF 197

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ + L    +  D+S   AD AI L +P      + R L  +H+  +A+  YL+    
Sbjct: 198 PNVNVDLYCAMRSADVSRHEADVAIHLSRPAALDVKLVR-LGRMHLMCFASEKYLETYGV 256

Query: 180 PLSIQELDKHNLI-----------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
           P SI EL KH L+            F  + P                G  +   + + + 
Sbjct: 257 PKSIDELVKHRLVLQVADEAAANTAFATIFP----------------GYEQRDLIAMTTN 300

Query: 229 LSIMQYCVL--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +S   Y  +  G+GI + P Y       +V +  D +  S+ ++  Y      TG++   
Sbjct: 301 VSSANYWAVAHGAGIGVFPTYASALGGKIVPLEVD-LKWSYDIWLSY---HATTGRIPRV 356

Query: 287 RNFIFLKARDW 297
           R+ I     DW
Sbjct: 357 RHMI-----DW 362


>gi|86139527|ref|ZP_01058095.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85823710|gb|EAQ43917.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 323

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 138/297 (46%), Gaps = 27/297 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R F   A++GSFT AA+Q+ +S    S+ ++ LE  +G++L  R  R + LT  G  
Sbjct: 27  DQIRAFVATAQTGSFTAAADQMGISNRLTSKYVAELEARLGVRLLQRTTRRVGLTPAGED 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +    +    E+ ESS   SG LR++  I  G+  + G L  F   +P + I+
Sbjct: 87  LLTRAPALLDDFDAVLSEVTESSKGFSGTLRVSAPITFGEIYVVGMLARFAAAHPAVSIE 146

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD+K +D++ +  D   RL      +SL  R+L        A+P YL  C  P + +E
Sbjct: 147 LRLDDKYLDLASEGLDLTFRLGH-FDQASLKVRRLGEFRSVLVASPDYLARCGTPTTPEE 205

Query: 186 LDKHNLITFGDLIPKCMEDFN------WLATVDRPIGEPRISCL----QVNSYLSIMQYC 235
           L  H           C+ D N      W+    R  G   I+ +     VNS  + +   
Sbjct: 206 LSNH----------ACIVDTNRRNPRRWMF---RKGGSETIAHVTGRFHVNSASAAVALA 252

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + G G+A +P + ++    + +LV ++++  + S  V   Y E      K++A  +F
Sbjct: 253 ISGIGLAYVPSFALRGAVKSGDLVALLDEYRSESGPVGAAYLEGRTLPRKVRALIDF 309


>gi|330960495|gb|EGH60755.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 302

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 144/295 (48%), Gaps = 20/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   S +P G LR++  +      L   L +FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQSSEPRGTLRLSAPLSFAVAHLGCLLPQFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++ +I     A+P YL     P +  
Sbjct: 124 EVDLSDRPVDVISEGYDLALRI-GVLEDSSLIARRIASIDRVYCASPGYLAARGTPQTPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238
           +L +H+ + +G           W     R  G  ++S L V+  + +          V G
Sbjct: 183 DLHQHDCLPYGH-----SRQVQW-----RFQGAGKVSSLSVSGRMRVNNGELLRDAAVAG 232

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  LP +IV     + +LVR+++D      T+   YP+  + +  ++ F  F+
Sbjct: 233 LGITYLPTFIVGAALRDGSLVRVLDDRRPEPLTLSAVYPQHRQASRLVQVFIEFL 287


>gi|116252247|ref|YP_768085.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256895|emb|CAK07989.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 297

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 6/284 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L  F  VA +GSFT A+ +L LSQS++S  +  LE  +G++L  R  R L+LT+ G
Sbjct: 5   DFSELAAFIAVAEAGSFTRASAKLGLSQSAVSYSVRMLEQRLGVRLISRTTRSLSLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++ R     +  +E+    +     KP+G +RI T      ++L   +  FL  YPDI+
Sbjct: 65  ERMLRNLRPAFEHIESEIAAVTSLRDKPAGTIRITTFRYAAMSVLWPVMTTFLTEYPDIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ILD    DI     D  IR+ + +Q   +  R    + M    +P Y +N   P++ 
Sbjct: 125 MEVILDEGLTDIVAGRFDAGIRIGEQVQKDMVAVRIGPDLRMAVVGSPSYFQNRTIPMTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I++       +  + W    D      R++  L +N  L +    + G G+A
Sbjct: 185 RDLGDHRGISYRQTTGGGL--YAWEFERDSEELVVRMNGPLIINDSLMLEAAALDGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
              +  V     +  L+R+++D   P    +  YP   ++T   
Sbjct: 243 YTFESQVSQYVADGRLIRVLDDWCQPFPGYHLYYPSRRQHTAAF 286


>gi|167578175|ref|ZP_02371049.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 299

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 132/291 (45%), Gaps = 16/291 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFIEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    +     + +    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLADHVATVVAKPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNEVD-PSLIARRLGTCRSVLCASPGYLAEHGAPRQPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++  + G GIA
Sbjct: 185 ARHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAAIAGGGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP +   +      L R++ D   P   +Y  Y    +    ++A  +F+
Sbjct: 237 LLPTFAAAEPIRAGTLARVLPDCAAPDLGIYAVYASRKQMPLAMRAMIDFL 287


>gi|15889748|ref|NP_355429.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157664|gb|AAK88214.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 145/292 (49%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G+F+ AA  L++ +++++  +  LE  +   L  R  R + LT  G+  +
Sbjct: 7   MRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHLQTTLLNRTTRRVMLTTDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S++  ++E     +  + V+PSG+LR+         ++  +L EF   YP I++ L 
Sbjct: 67  ERASQILSEIEELDGSMSSAQVQPSGRLRVEMAGVFADLVVIPHLCEFYQRYPQIRLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D   +  DCA+R+   ++  SLI RK+  +    +A+P Y++N   P   ++L+
Sbjct: 127 VGDRLVDYIAENVDCALRV-GVLRDQSLIARKVGELRFETFASPSYIENFGMPREPEDLE 185

Query: 188 KHNL------ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           K +        T G ++P   +  N + +V+     P    + VN   + +   + G GI
Sbjct: 186 KEHYSVGYLNATTGQIMPASFD--NGVRSVEL---TPNY-VVSVNDSRTYLNAALAGMGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++V+D      LV ++ +    +  +Y  YP+    T K++ F +++
Sbjct: 240 VQLPVFMVRDALSRGELVPVLSEWRREAMPIYVVYPQTRHVTNKVRVFVDWL 291


>gi|126455278|ref|YP_001065164.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|242314710|ref|ZP_04813726.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|126228920|gb|ABN92460.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|242137949|gb|EES24351.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 294

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 139/287 (48%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++    L   +L   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W    A  D  +  P+   +  N+  + + + + G G+A +PD
Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPQ--SMICNNVETRVCFAIRGRGLACVPD 241

Query: 247 YIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+D     R+   ++  I    T +  +P     + KL+AF +FI
Sbjct: 242 FAVRDELASARLRTALDAYIERPQTFHVLWPSGRHASPKLRAFVDFI 288


>gi|167625200|ref|YP_001675494.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167355222|gb|ABZ77835.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 303

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 142/289 (49%), Gaps = 13/289 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  V +SG F+ AAE L  S S +S++++ LE  +G++L  R  R + LT +G 
Sbjct: 11  FDGIVIFAQVVKSGGFSAAAEVLGHSTSYVSKEVNKLEERLGVRLLNRTTRSIGLTPEGD 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++    E+    + ++ V P G LR++  +   QN L+  + ++L LYP++ +
Sbjct: 71  AYYQQCLQLIIDAESAVGLITQNDVSPRGVLRLSCPVGFAQNHLKPIISQYLQLYPNVSL 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +   D+  D  D AIR    ++ SSLI RK+ +   +  A+  Y+    +P   +
Sbjct: 131 DLDLSDNRTDVVADGYDLAIRASAQLEESSLICRKIYSCKAYTVASKEYISRHGKPHHPR 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGSG 240
           EL+ HN I + +       D+     +D      + + R   L  N ++  +   + G G
Sbjct: 191 ELETHNGICYSNHKQPSRWDY-----IDHDGKHFVVDIRQKILCNNGHMQ-LSMALAGHG 244

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  LP + ++   ++  L  + E+  +    V+  YP     + K++AF
Sbjct: 245 ITRLPSFYLQGALESDQLEILFENFPSADIDVFVVYPSRKHLSPKVRAF 293


>gi|187919069|ref|YP_001888100.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717507|gb|ACD18730.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 304

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 136/288 (47%), Gaps = 11/288 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  +G+F  A+E L +S   +SR I+ LE  +  +LF R  R ++LTE+G + +  
Sbjct: 14  VFAAVVDAGTFAAASELLGMSPPGVSRAIARLEKRLKTRLFNRTTRAVSLTEEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  +E         +    GKLRI       + +L   L EF+  +P+++++LI  
Sbjct: 74  VMPHLRGMEEAAAAAAGGAATVRGKLRINLDPVFSRIILGPKLDEFMDAHPELELELIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE--LD 187
           ++  D+ MD  D A+R  +P +SSSLI RKL+   +   AAP YL     P   QE  L 
Sbjct: 134 DQLGDLVMDGFDLALRFGEP-RSSSLIARKLLDTAVVTVAAPSYLARRGRPAEPQELGLG 192

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA---- 242
            H  + F +  P   + + W      + I       L VN   +++  C+ GSG+A    
Sbjct: 193 MHRCLEFRN--PDTGKPYPWEFHRKRKKIVVETNGRLTVNDPSALLNACLAGSGVAQMLL 250

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  ++++++   LV +  D     F +Y  +P       + + F +FI
Sbjct: 251 LGGEHLIREG-RLVNLFPDWPDERFPLYAYHPSRHHTPARTRVFLDFI 297


>gi|71278724|ref|YP_267987.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144464|gb|AAZ24937.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 293

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 141/293 (48%), Gaps = 17/293 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GSF+ AA     S S IS+ ++ LE  VG++L  R  R ++LT +G   +  
Sbjct: 3   IFTQVVECGSFSGAAIATGHSNSYISKTLNKLEARVGVRLLNRTTRSISLTPEGQVYYEQ 62

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++          L +S ++P G L+I+      +N LQ  +  F+  YP++ + L L+
Sbjct: 63  CQQLVLDAHDAVSLLTQSHIEPKGVLKISCPTSFAENHLQEVMSAFMHQYPEVNLVLDLN 122

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  D  D  IR    +  SSL+ RK+ +   +  A+  YLK    P S ++L +H
Sbjct: 123 DRHVDLVQDGFDLVIRATDKLAESSLVCRKIYSCKAYTVASHDYLKRFGLPQSPEQLSEH 182

Query: 190 NLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             I + +L     +   W+      T ++   + ++ C   +  L+++   + G GI  L
Sbjct: 183 QCICYSNL----KQANKWIYSHSNGTDNQVEVKAKLLCNSASMELAMV---LAGHGICRL 235

Query: 245 PDYIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P +++    +DN  L  +  D ITP+  VY  YP     + K++ F + +  K
Sbjct: 236 PAFVMEKELQDN-KLAILFNDYITPTIDVYAIYPSRKHLSPKVRCFIDLLVDK 287


>gi|52426189|ref|YP_089326.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308241|gb|AAU38741.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 295

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 10/285 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V +SGS +HA E   +  S +SR+++ LE  +G +L  R  +G++L E G +
Sbjct: 14  DDMRLFVSVVQSGSLSHAGELTGIPVSRLSRRLTQLEQALGTQLLNRGKKGVSLNELGER 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               + ++  + E     +Q+S   PSG LRI+   D+    +Q  L  +L   P + ++
Sbjct: 74  FFEHSQQMLQQAELAIESVQKSLENPSGLLRISVAADIFYLFIQPYLATYLNENPQVNLE 133

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L N+ I++  D  D AIR    I + +++ R    +    +A+  YL    EP S  +
Sbjct: 134 INLSNQKINMIQDGVDLAIRT-GVIDNENVVARLWKKMEFGVFASQAYLAKYSEPQSPND 192

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H++I+    +P   +  N    V       R++C   N +  + Q     SGI +LP
Sbjct: 193 LYQHHIISQMYTLPWRFQQGNQEVAV---FPHSRLTC---NDFAIVEQQLKQHSGIGILP 246

Query: 246 DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                +  +L+RI+ D    S  V   Y    +N G +   R+F+
Sbjct: 247 ITKNHNRSDLIRILADWQLQSVPVSLIY---YRNRGAIATVRSFV 288


>gi|167908981|ref|ZP_02496072.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
          Length = 343

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LR+   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPTHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|300896273|ref|ZP_07114817.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300359814|gb|EFJ75684.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
          Length = 308

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 15  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 75  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134

Query: 131 KDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL +        I  S LI  KLVT+     A+P YLK    P + 
Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAIPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187

Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           QEL  HN +         +   +F+ +A  +    E  +S   + N   S+++  + G+G
Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 246

Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 247 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302


>gi|325982030|ref|YP_004294432.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212]
 gi|325531549|gb|ADZ26270.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212]
          Length = 303

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 13/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  VA +GSF  AA ++++S++++S+ ++ LE ++  +LF R  R L+LTE G
Sbjct: 3   DLNLLIIFARVAEAGSFAEAARRMNISRAAVSKAVAKLEKDLSTRLFLRSTRHLSLTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    + +  + E  +  +     +P G L+++ +   G   +   L  FL  YP I+
Sbjct: 63  TTLSEHANRILEESEHAERAINSLHAEPRGVLKVSVSSSFGTRHIAPALPCFLTRYPKIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +   D+  +  D  IR+       +L+ RK+  +     A P Y +    P + 
Sbjct: 123 IDLTITDHPGDLVEEGYDVQIRVTNE-PDLNLVARKIAPVRRILCATPQYFQQWGMPKTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSG 240
           ++L+KHN +     + +    F+       P G+   P    L++N   ++ Q  + G G
Sbjct: 182 EDLEKHNCLDCALSVEQGYWRFSG------PTGKIKVPISGTLRINDNDALAQAALHGLG 235

Query: 241 IALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IALLP Y +       R+   + + ++    +Y CY  +     K++AF NF+
Sbjct: 236 IALLPTYTIGMELQKGRLQVALPEYLSVERHIYACYLPSRHLPIKIRAFINFL 288


>gi|325523613|gb|EGD01903.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 301

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAESSVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ EL
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPTTLAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R++  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWAFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + V ++     LV +++    P   ++  +P+
Sbjct: 242 WWEVGEDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274


>gi|218703579|ref|YP_002411098.1| putative LysR-like transcriptional regulator [Escherichia coli
           UMN026]
 gi|293403416|ref|ZP_06647507.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298379027|ref|ZP_06988908.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|218430676|emb|CAR11548.1| putative LysR-like transcriptional regulator [Escherichia coli
           UMN026]
 gi|291429269|gb|EFF02289.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298280140|gb|EFI21644.1| transcriptional regulator [Escherichia coli FVEC1302]
          Length = 329

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 36  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 95

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 96  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155

Query: 131 KDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL +        I  S LI  KLVT+     A+P YLK    P + 
Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAIPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208

Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           QEL  HN +         +   +F+ +A  +    E  +S   + N   S+++  + G+G
Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 267

Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 268 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323


>gi|107028770|ref|YP_625865.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690071|ref|YP_835694.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897934|gb|ABF80892.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648160|gb|ABK08801.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 301

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ EL
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R++  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWSFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + V ++     LV +++    P   ++  +P+
Sbjct: 242 WWEVGEDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274


>gi|302188178|ref|ZP_07264851.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae 642]
          Length = 322

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 141/288 (48%), Gaps = 14/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++T++G  
Sbjct: 7   NDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDEGQI 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     V   L+  +  L      PSG+LRI+  + LG+  +  +++  L  +P + + 
Sbjct: 67  LYERCVGVLQDLDDVEDALAFRRSTPSGRLRISLPVALGRLHVLQHIECCLNDWPSLSVD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    EP + ++
Sbjct: 127 ITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHDEPKTPED 186

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L +H  + F   G L+P       W   V+   +       LQ++S  S+ Q  + G GI
Sbjct: 187 LSEHQCLHFVSGGRLLP-------WNFRVNGSSVPVTHGGRLQMDSAESLRQSAIAGLGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A LP Y+V D+     LV+++      +  +   YP     + K++ F
Sbjct: 240 ATLPSYVVNDDLRSGKLVQLLAGYAEAAEPIRVIYPSKRHLSPKIRLF 287


>gi|260431621|ref|ZP_05785592.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415449|gb|EEX08708.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 294

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 131/282 (46%), Gaps = 6/282 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ +R F   A +GS + AA +L  +Q ++SRQI+ LE+++G+ LF R  R L +T  
Sbjct: 7   FDWNHIRAFLATAETGSLSAAARRLDQTQPTLSRQIAALESDLGVMLFERVGRSLQITTA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L   T E+    +   +     +    G++RI  +  +   +L   L+E     P +
Sbjct: 67  GIELLEHTREMGAAADRIALAASGQAQSIEGQVRITASDVMSAYILPDLLREIRAQAPKL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I +I  N   D+    AD AIR  +P Q   LI + +     H YAA  YL     P S
Sbjct: 127 RIDVIAANDIRDLMRREADIAIRHVRPDQ-PDLIAKLVQEADGHFYAATAYLNRAGRPKS 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +H  I+FGD      +   +   +   + E        N  ++  ++   G GIA
Sbjct: 186 LSDLSRHAFISFGD----TAQMIAYFEPIGLHLTEENFRLGSQNGIVA-WEFARQGFGIA 240

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            + + +    P + R++ D+    F ++      L  + +++
Sbjct: 241 PMSEPVGDATPGMERVLPDMEPLRFPIWLTTHRELHTSRRIR 282


>gi|190150512|ref|YP_001969037.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|189915643|gb|ACE61895.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 297

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 33/307 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           ++VF +VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+ G    
Sbjct: 7   IQVFLMVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66

Query: 65  ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               K+  +TS +     T Q EL+       G L+IA+    G   L   ++ FL  +P
Sbjct: 67  EYCKKMTELTSAIEQDFLTKQGELR-------GSLKIASNAAFGSTHLLNAIRTFLAKHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL      
Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLSRHGTI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236
            S QEL  H  +   ++  K      W    D   G+  +    S L +N   +++ + +
Sbjct: 179 HSPQELANHRYLAHANVNRK-----EWTFIKD---GQETVLELTSQLTINDTGALLNFTL 230

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--- 290
              GIA+LP Y ++    N  L  ++ D   P++ VY  YP   +    +++F +F+   
Sbjct: 231 ADGGIAMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLPKTVRSFVDFLVEE 290

Query: 291 FLKARDW 297
           F    DW
Sbjct: 291 FEGKGDW 297


>gi|53717758|ref|YP_106744.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|53724669|ref|YP_101978.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67642449|ref|ZP_00441205.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|76808955|ref|YP_331757.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121599020|ref|YP_994106.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124385694|ref|YP_001028233.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126440879|ref|YP_001057199.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126449285|ref|YP_001081874.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126451470|ref|YP_001064437.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134284075|ref|ZP_01770769.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167003299|ref|ZP_02269088.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167813628|ref|ZP_02445308.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167822172|ref|ZP_02453643.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167843763|ref|ZP_02469271.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167900758|ref|ZP_02487963.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167917024|ref|ZP_02504115.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217425029|ref|ZP_03456525.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226194650|ref|ZP_03790245.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237810333|ref|YP_002894784.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242314449|ref|ZP_04813465.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254176788|ref|ZP_04883445.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254182258|ref|ZP_04888855.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254188224|ref|ZP_04894736.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254197080|ref|ZP_04903503.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254203658|ref|ZP_04910018.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254208633|ref|ZP_04914981.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254260212|ref|ZP_04951266.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254295700|ref|ZP_04963157.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254360312|ref|ZP_04976582.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52208172|emb|CAH34103.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|52428092|gb|AAU48685.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76578408|gb|ABA47883.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei 1710b]
 gi|121227830|gb|ABM50348.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124293714|gb|ABN02983.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126220372|gb|ABN83878.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126225112|gb|ABN88652.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126242155|gb|ABO05248.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134244527|gb|EBA44631.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147745170|gb|EDK52250.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147750509|gb|EDK57578.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148029552|gb|EDK87457.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157806013|gb|EDO83183.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157935904|gb|EDO91574.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160697829|gb|EDP87799.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169653822|gb|EDS86515.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184212796|gb|EDU09839.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217392049|gb|EEC32075.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225933351|gb|EEH29343.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505039|gb|ACQ97357.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238523604|gb|EEP87041.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242137688|gb|EES24090.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243061155|gb|EES43341.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254218901|gb|EET08285.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 351

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LR+   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPTHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|325923478|ref|ZP_08185133.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325546045|gb|EGD17244.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 308

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 122/248 (49%), Gaps = 14/248 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +  FT AAE L ++ S++S+ I+ LET +G KL +R  R L LT +G   
Sbjct: 15  EMEVFIAVVAAEGFTAAAEPLGMTASAVSKLINRLETRLGTKLLHRTTRKLQLTPEGIAF 74

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H     +   ++  + E  +    P G++RI + +  G + L   L EFL  YPD+Q+ +
Sbjct: 75  HERCLRILDDIDCAEHEAGQVG-SPRGRVRINSHVAFGVHYLLPRLPEFLAHYPDVQLDV 133

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  D +D AIR   P+  S L QR+L    +   A+P YL+    P   ++L
Sbjct: 134 TLSDVVVDLLDDRSDVAIRT-GPLPDSRLTQRRLGASGLVVVASPDYLRRAGTPELPEDL 192

Query: 187 DKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +H  + F      D  P    D   +A    P G+     L++    S+ Q  + G+G+
Sbjct: 193 HQHRRLGFNYARHVDAWPFIGRDGARVAIA--PSGD-----LRLGDGESMRQMALAGAGV 245

Query: 242 ALLPDYIV 249
           A L  Y V
Sbjct: 246 ARLARYHV 253


>gi|170739445|ref|YP_001768100.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168193719|gb|ACA15666.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 306

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 128/290 (44%), Gaps = 11/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD L+VF  VARSG    A  +L L+ ++++R+I GLE  +G  LF+R   G  LTE 
Sbjct: 1   MNWDHLQVFLAVARSGQMLEAGRRLGLNHATVARRIEGLEAALGATLFHRRPHGSVLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L  V   +  ++      L+    +P+G +RI     LG   L   L      +  +
Sbjct: 61  GEGLVPVAERIEAEVLAATARLRAQEAEPTGTVRIGAPDGLGNLFLARELGRLARRHAGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+   +   +S   AD AI L +P     LI  KL    +  YAA  YL     P  
Sbjct: 121 IIELVPLPRSFSLSRREADLAIGLDRP-SHGRLILSKLSDYSLGLYAARDYLDQAGAPAG 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSG 240
             +L  H  +         ++D+ + + +D    + +      +    +  ++    G+G
Sbjct: 180 EADLAAHPAVI-------GLDDYAYASALDYAAFLQDRARRVFRCAGAVGQLEAVRAGAG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +L D+     P+LVR++  +          +P++     ++ A R+FI
Sbjct: 233 IGILHDFAAAGCPDLVRVLPGIQFRRTYWLMSHPDS-HEARRVAACRDFI 281


>gi|284920104|emb|CBG33163.1| LysR-family transcriptional regulator [Escherichia coli 042]
          Length = 307

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 14  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 74  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 133

Query: 131 KDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL +        I  S LI  KLVT+     A+P YLK    P + 
Sbjct: 134 GLSNIIADGCDVGIRLEQGLDEHMTAIPVSPLI--KLVTV-----ASPDYLKEHGIPETP 186

Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           QEL  HN +         +   +F+ +A  +    E  +S   + N   S+++  + G+G
Sbjct: 187 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 245

Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 246 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 301


>gi|189351988|ref|YP_001947615.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221210527|ref|ZP_03583507.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|189336010|dbj|BAG45079.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221169483|gb|EEE01950.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 307

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 149/300 (49%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +V R  SF+ AAEQL +S + +S++I+ LET++G +L +R  R +T+TE G +
Sbjct: 8   EDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRIAMLETQLGTRLLHRSTRRVTVTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + ++
Sbjct: 68  VFAHAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLNVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  +R+   I +  LI R+L   +    A+P YL     P ++ +
Sbjct: 128 LDLFDRLVDVAAEGYDLDVRIGDEI-ADHLIARRLAANYRVLCASPDYLARRGMPRTLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI------MQ 233
           L  H+ +   +               D P G  R++       ++V   LS       +Q
Sbjct: 187 LASHDCLAIKER--------------DHPFGVWRLNVRGDTVTVKVGGALSTNHGEVAVQ 232

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + G GI L   +      D+  L R++ D + P+  ++  Y E +  + K++   +F+
Sbjct: 233 WALAGRGIVLRSIWEAGPLIDSGALCRVLPDAVQPA-NIWAVYTERVAASAKVRVCVDFL 291


>gi|315182209|gb|ADT89122.1| transcriptional regulator, LysR family protein [Vibrio furnissii
           NCTC 11218]
          Length = 302

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 137/287 (47%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V    SFT AAE L+L  S++SRQ+  LE  +G++L  R  R L LT+ G +  
Sbjct: 7   IQVFQQVVEDQSFTRAAENLNLVPSAVSRQVGELEKWLGVRLVNRTTRSLHLTDDGRRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +E+  ++E  +  L E     SGK++I   + +GQ ++   L EF   +PDI + L 
Sbjct: 67  EKMAEISSQIEALK-ALNEDKSHLSGKVKITAPMMVGQIIVPDLLSEFKARHPDISLSLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+  D+  +  D AIR    +  SS   RK+  I     A+  YLKN        +L 
Sbjct: 126 LMNRKADLIEEGFDVAIRAGN-LSDSSFFARKIGDIAFKTVASRAYLKNSPPLNEPSDLC 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +HN I    L         W   V+  I   ++S  ++ N    I+ +   G G+A+LP+
Sbjct: 185 EHNCIINAAL----SNSKRWSYKVNHKIKAIKVSGDIESNESACILSFVRAGLGLAMLPE 240

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+++     L+ ++ D  +    +   YP     +  ++A  +++
Sbjct: 241 IYVREDLASGRLIEVLSDFASEPLPLNVIYPSNRLQSPTIRALIDYL 287


>gi|296156200|ref|ZP_06839039.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893706|gb|EFG73485.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 318

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 145/294 (49%), Gaps = 11/294 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LRVF  VAR  SF+ AAE L +S + +S++I+ LET +G +L +R  R + +TE
Sbjct: 6   SPDLGDLRVFCEVARKSSFSAAAEALSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +++    ++   ++    ++  +   P GKLRI+++   G+  +   L  F   YP 
Sbjct: 66  AGERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ +D++ +  D  +R+   I +  LI R+L + H    A+P YL     P 
Sbjct: 126 LSVRLDLFDRLVDVAGEGFDLDVRIGDEI-APHLIARRLASNHRVLCASPGYLARHGAPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + +L  H  +     I +    F  W  TV       +++  L  N     +++ + G 
Sbjct: 185 QLADLSSHACLA----IKERDHPFGLWRLTVRGETASIKVTGPLSTNHGEVAVEWALAGR 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI L   + V+   +   L +++ +V  P+  ++  YP  L  + K++   +F+
Sbjct: 241 GIVLRSMWDVRPLLETGQLQQVLPEVTQPA-NLWAVYPARLAQSAKVRVCVDFL 293


>gi|289677341|ref|ZP_06498231.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
          Length = 322

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 141/288 (48%), Gaps = 14/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++T++G  
Sbjct: 7   NDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDEGQI 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     V   L+  +  L      PSG+LRI+  + LG+  +  +++  L  +P + + 
Sbjct: 67  LYERCVGVLQDLDDVEDALAFRRSTPSGRLRISLPVALGRLHVLQHIECCLNDWPSLSVD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    EP + ++
Sbjct: 127 ITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHDEPKTPED 186

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L +H  + F   G L+P       W   V+   +       LQ++S  S+ Q  + G GI
Sbjct: 187 LSEHQCLHFVSGGRLLP-------WNFRVNGSSVPVTHGGRLQMDSAESLHQSAIAGLGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A LP Y+V D+     LV+++      +  +   YP     + K++ F
Sbjct: 240 ATLPSYVVNDDLRSGKLVQLLAGYAEAAEPIRVIYPSKRHLSPKIRLF 287


>gi|146312778|ref|YP_001177852.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145319654|gb|ABP61801.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 298

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 24/303 (7%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V  SGSFT AA +L +S   + + I+ LET++G +L  R+ R  +LT+ 
Sbjct: 2   DKLRGMETFIAVVESGSFTGAASRLEMSAVMVGKYIALLETQLGTRLLERNTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         V  ++   +  ++     P+G LR++    LG  ++      FL L+PD+
Sbjct: 62  GRVYFDEAKRVLEQVSIAESAVERLRTAPAGTLRVSAPTSLGGCVIAPLTATFLQLWPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D+  +  D AIR+ + + +  L+ + L    M   AAP YL     P +
Sbjct: 122 RVELDLTNRRVDLVDEGIDLAIRIGE-VHNDDLVAKYLCPYRMVICAAPEYLARHGTPQT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYC 235
             +L  H           C+    W       L  V+  +   R + L+ N    +    
Sbjct: 181 PADLVDH----------LCLSHTVWTARNEWRLPGVEGEVRWKRDAILRCNDGYGLRMAA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G+G+ L P+ +V +      L+R++ED       V+  + + L+   KL  F   I  
Sbjct: 231 IAGAGLLLQPEVLVAEELAKGKLIRVLEDFTPEPRPVHLLWRQDLRPLPKLTHFIAHILA 290

Query: 293 KAR 295
            A+
Sbjct: 291 GAQ 293


>gi|288960796|ref|YP_003451136.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288913104|dbj|BAI74592.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 315

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 138/284 (48%), Gaps = 7/284 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L V   V  SGS + AAE+L LS S+ISR+I+ +E  +G +L  R  R + LT+ G+ 
Sbjct: 5   DDLTVLVEVVDSGSLSAAAERLGLSASAISRRIAQMENRLGTRLLARTTRRIALTDAGAT 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   L+  +  L E+  +P G LR+   +  GQ  +   L  +L  +P + ++
Sbjct: 65  FCLRARAILAALDEAEQSLTETGEEPRGTLRVTMPVMFGQMRVAPLLPSYLRRHPGVSLE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++   +  +  D AIR  + +  S+LI R+L  +     A+P YL+    P S  +
Sbjct: 125 VSLSDRVQRLVDEGLDLAIRTGR-LADSTLIARRLRPLRRSVVASPDYLERRGVPRSPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+ +T   L      ++ +L    R +  P     Q ++   +    V G G+A L 
Sbjct: 184 LARHDCLTL--LSGSGRPEWEFLVGERREVLRP-AGGFQADNLWMLRHAAVGGLGLARLA 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           D+IV+++     LV ++ D+      ++  YP     + K+++F
Sbjct: 241 DFIVEEDIRAGRLVAVLTDLEVMDEAIHAVYPATRHVSPKVRSF 284


>gi|220922493|ref|YP_002497795.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219947100|gb|ACL57492.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 300

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 132/292 (45%), Gaps = 8/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD LR     AR+G+ + AA  L +  S++SR ++ LE  VG ++ +R A GLTLT  G 
Sbjct: 7   WDHLRSLLAFARAGTLSSAARSLGVKHSTVSRHLAELERSVGSQIVHRAADGLTLTTAGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +   L   Q ++        G +RI      G   L   + +    +P + I
Sbjct: 67  RLMNAAEGMEVLLRQAQDDIAGRDRLIQGTVRIGAPDAFGSIFLAPRITQLAAQHPALNI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL+   +  +++   AD A+ L  P Q   L+ +KL    +  YA+P YL   R   ++ 
Sbjct: 127 QLVAMPRVFNLTKREADLAVALAIP-QHGRLLAKKLADYGLGLYASPAYLSRSRPIRTLD 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I + D +    E  ++L  V      P I+   Q +S L+ +   V G G+ +
Sbjct: 186 DLRGHQFINYIDELITIAE-LDYLDEV-----SPYINARFQSSSILAQLHATVSGFGLCV 239

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP ++ K  P+LV ++   +    T +    E      +++    FI+   R
Sbjct: 240 LPYFLAKQYPDLVNVLGREVVLKRTWWLLVHEDQNELSRVRLVHQFIYDTVR 291


>gi|118590223|ref|ZP_01547626.1| probable transcriptional regulator protein, LysR family protein
           [Stappia aggregata IAM 12614]
 gi|118437195|gb|EAV43833.1| probable transcriptional regulator protein, LysR family protein
           [Stappia aggregata IAM 12614]
          Length = 293

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 129/262 (49%), Gaps = 10/262 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  +AR+G    AA +L L+ ++++R+++ LE  VG +LF R   G  LTE 
Sbjct: 1   MNWDDIRIFLAIARTGQILAAARRLGLNHATVARRLTSLEDSVGTRLFDRSTSGCLLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+       +  +    + +L   + + +G +RI      G   L   L +    +P +
Sbjct: 61  GSRFFDRAERIEAEAVAAEADLTNDTPEITGTVRIGAPDGFGVAYLAPRLGKLTERHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL+   +   +S   AD A+ + +P ++  L+  KLV   +  YA+  YL+    P  
Sbjct: 121 TVQLVPVPRSFSLSRREADIAVTIDRP-ETGRLVAGKLVDYSLGLYASKTYLERRGTPAI 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +L  H+LI +       +ED  +  +++    I +   +  ++ S L   +    G+G
Sbjct: 180 ATDLTAHDLIGY-------VEDLLYSPSLNYGTEILKDWTARFEIASALGQTEAVRSGAG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDV 262
           I +L D+I +D+  LV ++ D+
Sbjct: 233 IGILHDFIARDDSGLVAVLPDI 254


>gi|83716864|ref|YP_439738.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|257142876|ref|ZP_05591138.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650689|gb|ABC34753.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 299

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 132/291 (45%), Gaps = 16/291 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFIEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    +     + +    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLADHVATVVAKPDDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNEVD-PSLIARRLGTCRSVLCASPGYLAEHGAPRQPHDL 184

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +HN +T   FG  +        W  T D  P   P    L  N  L +++  + G GIA
Sbjct: 185 ARHNCLTYAYFGQSL--------WHLTRDGEPATVPVQGNLSANDALVLLRAAIAGGGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP +   +      L R++ D   P   +Y  Y    +    ++A  +F+
Sbjct: 237 LLPTFAAAEPIRAGTLARVLPDCAAPDLGIYAVYASRKQMPLAMRAMIDFL 287


>gi|114331364|ref|YP_747586.1| transcriptional regulator, LysR family protein [Nitrosomonas
           eutropha C91]
 gi|114308378|gb|ABI59621.1| transcriptional regulator, LysR family [Nitrosomonas eutropha C91]
          Length = 291

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 7/247 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++ SF  AA+ + +  S++SR+IS LE  +G++L +R  R +TLTE G  
Sbjct: 5   NDMALFVEVVKAKSFRGAADAIGMPNSTLSRRISALEKTLGLRLLHRTTRKITLTEAGQI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  + +  Q +L E   +PSG LR +  +D     +   + EF  LYP I   
Sbjct: 65  YYERCKRIVDEAKLAQEQLSEMLTQPSGVLRASLPVDFTVTYMAPLIAEFAKLYPGIVFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ +D+  +  D AIR+ KP ++S LI R L  +  + YA+P YL    EP    +
Sbjct: 125 FDLTSRWVDLVNEPFDVAIRIGKP-ENSQLIARPLAVLPTYLYASPRYLDRSGEPAKPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +  G +        N   T    IG    S   +NS   I +   L  GI ++ 
Sbjct: 184 LANHECL--GIMKADTWTLHNGTNTTKISIG----SRFTLNSVGMICRLATLDMGIIMMM 237

Query: 246 DYIVKDN 252
           + IV D+
Sbjct: 238 EKIVADD 244


>gi|293408440|ref|ZP_06652279.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471618|gb|EFF14101.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 308

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 15  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 75  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARVLVEPHIGEFLTRYPKTKIELIMDD 134

Query: 131 KDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL +        I  S LI  KLVT+     A+P YLK    P + 
Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAIPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187

Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           QEL  HN +         +   +F+ +A  +    E  +S   + N   S+++  + G+G
Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 246

Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 247 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302


>gi|218510637|ref|ZP_03508515.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 304

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 19/300 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E+G +L  R  R L+ T+ 
Sbjct: 2   LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGARLLQRTTRSLSPTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +S+    +E   + L E+  +P+G +RI+  +  G + LQ  + + L  YP  
Sbjct: 62  GRLYYEESSQALRTIEGANLRLAEARAEPAGTIRISAPVGFGGHFLQDAIFDLLSTYPKS 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++  +  D A R    ++ S+LI RKL + H    A+P YL     P  
Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLARRGAPDR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
             +L +H+ +  G           WL  ++ P G+  I        N   ++M   + G 
Sbjct: 181 PADLARHDCVVAGQ-----STHAQWL--LEGPHGQETIPVSGRFAANEMQAVMAAAIAGY 233

Query: 240 GIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA LP  +    ++D   L R+++   TP   ++  YP +      +K    FI L AR
Sbjct: 234 GIARLPHGVANAYIRDG-RLCRVLDGYTTPVGGLHVVYPSSRHLPPLVK---TFIELAAR 289


>gi|148547927|ref|YP_001268029.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511985|gb|ABQ78845.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 292

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 140/291 (48%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R+F  V   GSF+  A +L++ Q ++S+Q+  LE  +G  +F R  R L LT+QG 
Sbjct: 4   FDSMRIFVRVVERGSFSAVARELNMGQPAVSKQVRALEQYLGGAVFARSTRHLALTDQGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    E+  +LE           + +G LRIA  +  G+  +   +  FL  +P +QI
Sbjct: 64  RFYSHCQEILSQLEHATRSFASGQEQIAGPLRIAAPVSYGRLCIAPLIGAFLQRHPYVQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L++ + D+ ++  D AIR+   ++S  L+   L T     YAAP YL+    P    
Sbjct: 124 DLRLNDYNEDLLVENIDLAIRI-GVVKSEGLVAVPLGTSTRRVYAAPAYLERHGRPREPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           EL  HN I F       +E ++ W  T      E  I   +  N+  +I +  + G GI+
Sbjct: 183 ELAGHNCIAF-----TLLEHYDRWHFTHRGEALEVAIKGNVTSNNSEAIREMVLGGLGIS 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L P ++     +  ++  ++++  T +  V   +    + + +  AF +F+
Sbjct: 238 LSPHWLFAADFEQGSVCSLLDEYQTTALPVSAVFSRERRRSARTMAFIDFL 288


>gi|148253791|ref|YP_001238376.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405964|gb|ABQ34470.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
          Length = 303

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 13/289 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + ++L  F  V  + SFT AA +L +S++ +S+Q++ LE E+   L  R  R +  TE 
Sbjct: 4   INLNRLVYFAAVVDAASFTRAAGRLGISKAVVSQQVAQLERELRTDLLVRTTRRVEPTEA 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  LH   + +  + E+   EL +++  P G LRIA   D G   L   +  F   YP  
Sbjct: 64  GRLLHARCAAILREAESAMAELAQTNAAPMGLLRIAAPNDYGTCTLAPIVTAFSRAYPAC 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++LIL +  ID+     D +IR+   +  S+L  R++ +      AAP+ +K    P  
Sbjct: 124 RVELILSDSKIDLVASQIDLSIRVGW-LDDSTLQTRRIGSFRQLLVAAPNAIKRVAHP-- 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240
            ++L     I    L     E   W  T      E       L +N+  +++   + G G
Sbjct: 181 -RDLAALPFIANTAL----KEPLTWQFTKGSAAREIVQMSQTLTINTTPAVLAATLAGGG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +A+LPD+++ D+     LV I+     PS  ++  +P A     K+ AF
Sbjct: 236 LAVLPDFLIGDDLAAGRLVPILPSWTLPSGGIHAVFPAARFRAPKVTAF 284


>gi|259415112|ref|ZP_05739034.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259349022|gb|EEW60776.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 307

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 132/285 (46%), Gaps = 10/285 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW+ +R F V A +GS + AA+QL L+Q ++SRQ++ LE E+ + LF R  R L LT+
Sbjct: 17  TVDWNHIRAFLVTAEAGSLSAAAQQLCLTQPTLSRQVAALEAELELILFERIGRKLALTQ 76

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +        +     +    G +RI  +  L   +L   L +   + P 
Sbjct: 77  AGRQLLEHGRHMGDAASALTLTATGQAEAIDGTIRITASDILSSYVLPPILHQLRQIAPQ 136

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L+  N   D+    AD AIR  +P Q   LI R+L     H YAA  YL     P 
Sbjct: 137 LTIDLVAANDIHDLMRREADIAIRHIRPEQ-PDLIARQLPDGQAHFYAATSYLDQHGRPQ 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GS 239
           + ++L  H+ I+FGD   + +E    L    RP         ++ +   ++ + +L  G 
Sbjct: 196 TPEDLATHDFISFGD-SKRMIEHARELGLTLRP------DQFRIETRNGLVGWDLLRAGF 248

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           GIA + D + +    + RIM  V T  F  +      L  + K++
Sbjct: 249 GIAPMHDKVAEQTQGIERIMHWVPTTRFPFWLITHRELHTSRKIR 293


>gi|83644141|ref|YP_432576.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632184|gb|ABC28151.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 305

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 3/244 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA   SFT AA+ L +S++  +R ++ LE+ +G +L  R  R ++LTE G    
Sbjct: 7   MQVFAEVAARKSFTAAADNLDMSRAMTTRYVNELESWLGARLLNRSTRRISLTEAGEACL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +  +    +   +P G +RI T++  GQ  L   + E+L  YP  ++ + 
Sbjct: 67  LRCRQILDLTDDVEAVAGKRETEPYGLIRITTSVAFGQVHLAPVVAEYLKRYPKTRVDMQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D AIR    +   +LI RKL        A+P YLK    P + +EL 
Sbjct: 127 LLDRSVNLIEERIDLAIRTTNDLD-PNLIARKLTDCRSAICASPQYLKERGAPKTPRELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN +T+     K    F    T      E     L  N  L++   C+ G+GIA+LP Y
Sbjct: 186 EHNCLTYSHF-GKSQWRFTHKKTGAVEAAEV-TGNLSANEVLALTNACIAGAGIAMLPTY 243

Query: 248 IVKD 251
           +V D
Sbjct: 244 MVAD 247


>gi|295675268|ref|YP_003603792.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295435111|gb|ADG14281.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 310

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 148/289 (51%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  +GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRHVVEAGSFVGAAEKMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+   +L+     +  +SV P G+LR+++    G N +   + ++   YP + + + 
Sbjct: 67  ERLSQALTELDEAGQAVGAASVVPHGRLRVSSLSAFGLNHVMAAVADYAEQYPQVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R++ T H+   A+P YL+    P S+ +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPGGLKSSSLIARQIATAHLVLCASPAYLRKHGTPKSVADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + +  +    +E    +AT D      R+S  L VN   +     +LG+GIA+L 
Sbjct: 187 ARHNYLQYAGV--SALE----VATGDAS-SRVRLSGNLIVNQLEAQRVVVLLGAGIAMLG 239

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
             ++  +     LV ++ D + P    ++  Y      + K+++F +F+
Sbjct: 240 TEVIGSDLAEGRLVPLLVDEVPPRELPIHVVYTSRRHLSAKVRSFVDFL 288


>gi|85711235|ref|ZP_01042295.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
 gi|85695148|gb|EAQ33086.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
          Length = 285

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 138/295 (46%), Gaps = 27/295 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F       S + AA +LH++ S++S+Q+  LE + G+ LF+R+ R +TLTE G   +
Sbjct: 9   MKAFTRTVELKSMSAAASELHMTVSAVSQQLRKLEKDNGLALFHRNTRVMTLTEAGEVFY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++       Q  +++ +  P+G ++I   +  G  LL   L++    +PD+Q +L 
Sbjct: 69  QSCLDILSIAAKNQERMEQLTQTPAGVMKIMAPVGFGGGLLSEPLRQLTEQFPDMQFKLS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+     D AIR+  P+  SSL    L+  H+    A           S  EL 
Sbjct: 129 MTDEPIDLVTAGVDLAIRI-GPLPDSSLYSHHLINWHLVPCVA-----------STHELA 176

Query: 188 KHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           K  + +  DL     E F  ++  T D P+  PRI   QV++  + +Q    G G ALLP
Sbjct: 177 KRRVSSLEDL---QAETFIAHFSNTYDLPLPAPRI---QVDNMQTTVQLTCDGVGFALLP 230

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  VK    N  LVR++ D     + VY   P       K +   N I     DW
Sbjct: 231 EPEVKPQLQNGELVRLLPDWEGVEYGVYAVLPVKESIPAKTRLVMNVI----EDW 281


>gi|226945641|ref|YP_002800714.1| LysR family regulatory protein [Azotobacter vinelandii DJ]
 gi|226720568|gb|ACO79739.1| Regulatory protein, LysR family [Azotobacter vinelandii DJ]
          Length = 304

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 14/248 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +  FT AAE L ++ S++S+ I  LET +G KL +R  R L LT +G   
Sbjct: 11  EMEVFIAVVAAEGFTAAAEPLGMTASAVSKLIHRLETRLGTKLLHRTTRKLQLTPEGGAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H     +   +   + E  ++   P G++RI + +  G + L   L EFL  YPD+Q+ +
Sbjct: 71  HERCLRILDDIGCAEHEAAQAG-SPRGRVRINSHVAFGVHYLLPRLPEFLGCYPDVQVDV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  D +D AIR   P+  S L QR++    +   A+P YL+    P   ++L
Sbjct: 130 TLSDIVVDLLDDRSDVAIRT-GPLPDSRLTQRRIGASGLVVVASPDYLRRANTPERPEDL 188

Query: 187 DKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +H  + F      D  P    D   +A    P G+     L++    S+ Q  + G G+
Sbjct: 189 RQHRRLGFNYARHVDAWPFIDGDGARIAIA--PSGD-----LRLGDGESMRQMALAGVGV 241

Query: 242 ALLPDYIV 249
           A L  Y V
Sbjct: 242 ARLARYHV 249


>gi|84389435|ref|ZP_00991241.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01]
 gi|84376950|gb|EAP93823.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01]
          Length = 301

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 139/287 (48%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++AR G+FT AAE+L +S+S +SRQ+S LE ++G+ LF R  R L LT  G  L+
Sbjct: 10  IRSFVLIARLGNFTKAAEELDVSRSHVSRQVSSLEKQMGVTLFIRTTRTLRLTHAGQDLY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++   I   +   +  G +++      LG+ ++   + EF+ LYPDI I L
Sbjct: 70  ARCEQALDNIDQALIAAVDDVEEVRGDIKVNCVGGYLGEVIIADLVNEFMQLYPDISISL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+   ++ +  I RKL+ I M   A+P Y     +P   ++L
Sbjct: 130 DFSSNRVDLIEDAFDIAFRM-GSLEDAGFIARKLLDIEMGTLASPEYFARKGKPSHPKDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +T    + K    F  L    + +       LQ  +   ++Q    G+GI  +P 
Sbjct: 189 IHHDCLTGS--VRKW--SFQALDDTKKTVDVHVTGRLQCKNGRVLVQGAKSGNGIIRVPT 244

Query: 247 -YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y +++  +  L+++ E+ + P       Y        +++ F +F+
Sbjct: 245 IYCLQELNDGQLLQVFEEWVVPKVDFSAIYHRDRYQPSRIRTFIDFV 291


>gi|293605878|ref|ZP_06688248.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292815665|gb|EFF74776.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 321

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 138/293 (47%), Gaps = 13/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D+ RVF  VA  GSF  AA  L L ++S+S  I  LET++G +L +R  R + LT  G 
Sbjct: 4   FDQYRVFAQVAEMGSFIKAAHALELPRASVSAAIQQLETQLGARLLHRTTRQVRLTPDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +   +E      Q S  + SG+L I     + + ++   L   L  +P +Q+
Sbjct: 64  QLLDRIRALLTDVEDIDQLFQASQRQVSGRLIIDAPSRIARRVIAPALPGLLRRHPRLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+     DCA+R+ + +  SSL+ R L  I +   A+P YL+   EP    
Sbjct: 124 TLGSSDRAIDLVQVGVDCAVRIGR-LHDSSLVVRPLGLIALINCASPAYLREHGEPKQPA 182

Query: 185 EL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239
           EL D H  + +    PK   +  W        G  +I    S + VN+  S +  C+ G 
Sbjct: 183 ELPDGHWAVGYAS--PKTGRELPWEYLPGD--GSEQIFEVPSRVVVNNAESYIACCLAGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +P + V+   D+  LV +M      S  V   YP   + + +L AF+ +
Sbjct: 239 GLIQIPRFDVQHLLDSGQLVEVMPTCRAASMPVSLLYPPRRQRSRRLAAFQEW 291


>gi|163792437|ref|ZP_02186414.1| Transcriptional Regulator, LysR family protein [alpha
           proteobacterium BAL199]
 gi|159182142|gb|EDP66651.1| Transcriptional Regulator, LysR family protein [alpha
           proteobacterium BAL199]
          Length = 311

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 137/283 (48%), Gaps = 8/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VA +G F+ AA++L LS++  SR +  LE  +G++L +R  R ++L+E G    
Sbjct: 7   LQTFVAVADTGGFSSAADRLGLSRAMTSRHVQVLEDRLGVRLLHRTTRRVSLSEAGLGYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +  + E++     P G LR+   +  G+  L   L  FL+ +P + ++L 
Sbjct: 67  ERARRLLADFDDAETEVRGERATPRGTLRVNGPVSFGRAHLAATLPSFLVRHPGLSVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D+  +  D AIR+ + +  SSLI ++L T+ +   A+P YL     P +  +L 
Sbjct: 127 VNDRVVDLIEEGYDVAIRIGR-LSDSSLIAKRLGTVAVRLAASPAYLAAHGIPTTPNDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +          F      D  +   PR++    N+   + +    G+GI L PD
Sbjct: 186 DHTWLGYTYSTGVAGLRFTSADGRDAVVRLGPRLTA---NNGDVLTEIAAGGAGIILQPD 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +I+     +  LV ++ D   P   ++  + ++     K++AF
Sbjct: 243 FILGPYLADGRLVPVLPDWGVPDLDIHAVHHQSRHVAAKVRAF 285


>gi|15890397|ref|NP_356069.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15158618|gb|AAK88854.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 301

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 126/247 (51%), Gaps = 7/247 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   G F+ AA   +++ S++S+ I+ LE+ +G +L  R  R L +T +G   
Sbjct: 11  EMEIFVRVVELGGFSRAAAAANMTPSAVSKLIARLESRLGARLLNRSTRQLQITPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   + +   LE  +    E   +P G++RI T+     ++L   L  FL L+P+I + +
Sbjct: 71  YERATRILADLEEAERAAGERE-RPIGRVRINTSASYATHILAPILPRFLALHPEITLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +  +D+  +  D A+R   P++SSSL+ RKL    M   AAP YLK C  P +I +L
Sbjct: 130 VQTDLVVDLLAERMDVAVRA-GPLKSSSLVARKLGETRMVIAAAPDYLKRCGVPQTISDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + HN +  G    + ++   W L    + +  P    +QV+    + +  + G G+  L 
Sbjct: 189 EGHNCLALG--YARSID--GWPLQDGGKTVVIPATGRVQVSDGEGLRRLALAGVGLVRLA 244

Query: 246 DYIVKDN 252
            + ++++
Sbjct: 245 AFTIRED 251


>gi|330810393|ref|YP_004354855.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378501|gb|AEA69851.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 309

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++++++ +  LE  + +KL  R  R + +T  G+
Sbjct: 4   FDAMQAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVKLLNRTTRKVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  +  +   P G+LR+     L   +L   L  F   YPDIQI
Sbjct: 64  VYYERVIRLLADMDDAETSVSGAQALPRGRLRVDVPSPLAAMILIPALPTFYGRYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R  + ++  SLI R++  + +  +AAP YL     P   +
Sbjct: 124 DMGVSDRIVDMLDENVDCVVRGGE-LRDQSLIARRVGDLALGVFAAPSYLARFGMPAHPR 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGSG 240
           EL+  +  T G L  +  +   +    D  +    G   ++    N+YL+     + G G
Sbjct: 183 ELEDSHHRTVGFLWARTGKSLPYAMRRDGELLHVKGRYALAIDDGNAYLAA---GLAGLG 239

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  LP Y+    +    LV + ED       +Y  YP     + KL+ F  ++
Sbjct: 240 VLWLPKYMSGPHEAQGGLVPLFEDWHLEPMPLYLAYPPNRHISAKLRVFIEWV 292


>gi|78060944|ref|YP_370852.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968829|gb|ABB10208.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 353

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 139/296 (46%), Gaps = 11/296 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 44  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 103

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LRI +T   G+ ++   L++F   YPDI ++L+L
Sbjct: 104 CRPGIEHLAQALDDMRELRSGPPSGHLRIGSTPGFGRKIIAPLLRDFHAQYPDITLELLL 163

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++  D S D  D   R  + ++ S+++ R+L+ + M   A+P Y+     P  + EL +
Sbjct: 164 NDRPADFSADRIDVEFRDGR-MEDSAIVARQLIPMQMIVCASPSYVHRHGLPRHVDELAQ 222

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  I       +  E   W   VD    + +++     N    +++  + G GIA LP Y
Sbjct: 223 HRCINLRTASGRVTE---WEFKVDGLTQQRQLAAHHTFNDMDLVVRAALDGLGIAQLPAY 279

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298
            V D   +  LV  +          Y CY        +++ F +++    +ARD +
Sbjct: 280 QVCDLLADGQLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTRARDLQ 335


>gi|323191415|gb|EFZ76677.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Escherichia coli RN587/1]
          Length = 308

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 15  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNAKLIYRTTRNMSLTEEGQRLYEVL 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 75  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLIEPHIGEFLTRYPKTKIELIMDD 134

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187

Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           QEL  HN +         +   +F+ +A  +    E  +S   + N   S+++  + G+G
Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EMEVSGKYISNDDESMIRMALNGTG 246

Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 247 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302


>gi|149917393|ref|ZP_01905891.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149821730|gb|EDM81126.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 323

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 131/291 (45%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V  +G FT AA QL LS+S++S ++  LE  +G+KL  R  R + LTE G +L 
Sbjct: 12  LAVFGAVVDAGGFTAAAAQLGLSKSAVSSRVRRLEARLGVKLLNRTTRRMALTEAGGRLA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    V  +LE    E      +  G++R+   + LGQ  L      FL   P + I+L 
Sbjct: 72  RRVELVGGELEQASEEASALGSERVGRIRVNAPVSLGQRHLAEPTARFLCANPRVSIELD 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +D+  +  D AIR+  P+  SSL  RKL T      A+P YL     P +  +L 
Sbjct: 132 LSERRVDMIAEQYDLAIRV-GPLGDSSLRARKLATSRQLVVASPDYLARRGRPQTPADLR 190

Query: 188 KHNLITFGDLIPKCMEDFN-----WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H+ + +   +     +F          V  P+      CL   +          G G+A
Sbjct: 191 EHDCLLYRHQLTGAAWEFGEGRGRSRVRVRGPMLSDNGDCLASAAR--------AGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPD+IV +      L  +++D       ++  + E    +  L+A+ + +
Sbjct: 243 SLPDFIVAEAIARGELAVVLDDHCRSLSPIHALFVEGRLMSNALRAYLDLL 293


>gi|307263857|ref|ZP_07545462.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306870846|gb|EFN02585.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 297

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 33/307 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           ++VF +VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+ G    
Sbjct: 7   IQVFLMVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66

Query: 65  ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               K+  +TS +     T Q EL+       G L+IA+    G   L   ++ FL  +P
Sbjct: 67  EYCKKMTELTSAIEQDFLTKQGELR-------GSLKIASNAAFGSTHLLNAIRTFLAKHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL      
Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLARHGTI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236
            S QEL  H  +   ++  K      W    D   G+  +    S L +N   +++ + +
Sbjct: 179 HSPQELANHRYLAHANVNRK-----EWTFIKD---GQETVLELTSQLTINDTGALLNFTL 230

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--- 290
              GIA+LP Y ++    N  L  ++ D   P++ VY  YP   +    +++F +F+   
Sbjct: 231 ADGGIAMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLPKTVRSFVDFLVEE 290

Query: 291 FLKARDW 297
           F    DW
Sbjct: 291 FEGKGDW 297


>gi|167587902|ref|ZP_02380290.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 294

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 131/284 (46%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A   L +S S++ + I+ LE  +G++LF+R  R +TLT++G      
Sbjct: 9   AFVRAAETLSFVAAGRALGISASAVGKTIAKLEQSLGVRLFHRTTRRVTLTDEGRHFFER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +       +  +  S+ +P GKLR++  + +G   L   L EF   YPD+++ L  +
Sbjct: 69  CQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRRHYPDVELDLDFN 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D  IR    +  SSL+ R+L        A P YL     P   ++L+ H
Sbjct: 128 DRMVDVVEGGFDAVIR-SGALSDSSLMSRRLGPFGFVLCATPAYLAQAGTPRVPRDLEAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + +    P   +  +W    D        + +  N+  ++    + G GI  +PD++ 
Sbjct: 187 DCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGYMPDFLA 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +D   +  LV +++D           +P + + + KL+ F +F+
Sbjct: 245 RDALAHGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFL 288


>gi|92112952|ref|YP_572880.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796042|gb|ABE58181.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 309

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 9/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  VA +GSF  AA Q  L  SS+SR I+ LE  +G +L YRH R + LTE G + +
Sbjct: 10  LRLFVRVAATGSFAGAARQQGLPASSVSRHIAALEKALGQRLLYRHTRAVRLTEVGERYY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   L+    +   ++ +P G LRI   +  G+  +   L  F   YP I+ +L 
Sbjct: 70  QQVREILDTLDIATEQAAGTASQPQGLLRINAPVAFGRRHIAPRLASFQARYPRIETELT 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  ID  +      +     +  SSL+ R+L   H    AAP YL     P + + L 
Sbjct: 130 LSDAFID-PVQDGVDVVVRVGALNDSSLVARRLAEQHFVVCAAPDYLAQWGIPATPESLV 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN + +          F         + E R   L+ N+  S+++  + G GI L P +
Sbjct: 189 EHNCLIYKGTRGVQQWYFRSEGARRYQVREVR-GNLRSNNAESLLEAALQGQGIVLFPTW 247

Query: 248 IVK---DNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAF 286
           ++    +   L+ ++ D           ++  +PE    + K+ AF
Sbjct: 248 LIHAELEAGRLIPVLSDWEASGEPAPQGIHAIFPENRLRSSKVAAF 293


>gi|261822987|ref|YP_003261093.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261607000|gb|ACX89486.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 298

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 146/286 (51%), Gaps = 11/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ + ++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSITLTAEGSLFLAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  ++EL +++  P G+LR+  ++ L  +L+   L EF+  YP+I++ L   
Sbjct: 69  SRRILAEIEAAELELSQTNAVPRGRLRV--SLPLVSSLVLPVLGEFMREYPEIELDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R   P+  S L  R+L T      A+P YL     P +  +L +H
Sbjct: 127 DRMVDVIEEGFDAVVRTGNPVD-SRLTARRLGTFGFLLVASPDYLARHGTPKTPADLMQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             + +    P   +   W A    P G   P  + +  N+  + + + + G GIA LPD+
Sbjct: 186 ACLHY--RFPNSGKLEPW-ALRLAPNGPELPLPTSMICNNIETRVCFALQGLGIAYLPDF 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +++      L  I+ D +  S  ++  +P +   + K++A  +F+
Sbjct: 243 SIRELLAKGLLQPILNDYVERSGVLHVLWPASKHPSPKVRALVDFL 288


>gi|222084632|ref|YP_002543161.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722080|gb|ACM25236.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 301

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 139/289 (48%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VA +GS + AA +L LS+S +S +++ +E  +G  L +R  R LTLTE G+ 
Sbjct: 5   EGLTAFVTVAEAGSISEAARRLRLSKSVVSERLAEMEKTLGATLLHRTTRKLTLTEDGTV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +  ++     +L E     +G LRIA  +  G+  L   L  FL  +P+I++ 
Sbjct: 65  FLERATRIVREVREAAADLAERRGTLAGPLRIAAPVTFGRMHLGPVLYPFLAAHPEIELT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD++ +D + D  D  IR    I  S L+   L        A+P YL+    P S  +
Sbjct: 125 LELDDRRVDAASDGYDAIIR-HGLIADSRLVAWPLARSRRLLVASPDYLRQHGMPASPSD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H  I + +   + + D+ +       I   +++ L +N+        + G GIALLP
Sbjct: 184 LENHRGIFYTN---RGIADWRFQGPEGAVIVRGKLA-LGINNGDVSRDAAIAGLGIALLP 239

Query: 246 DYIVKDNPNLVRIME-DV---ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +I   + N   +++ DV     P F V+  +PE    + KL+A  + +
Sbjct: 240 AFIAGPSVNEGLLVDIDVGCRPEPEF-VFMAHPEGRNPSAKLRAIADHL 287


>gi|241203171|ref|YP_002974267.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857061|gb|ACS54728.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 293

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 9/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P++
Sbjct: 61  GEVFLASAERMETEMLAAQASLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P Q   L+  KL    +  YA+  YL     P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYTLGLYASRAYLAAQGTPAD 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           I  L  H  I +  DLI     +F+         G       ++++ +   +    G+GI
Sbjct: 180 IDALKAHRRIGYVEDLIFTASLNFSGAVMRSWDAG------FEISTAIGQTEAVRTGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +L DYI +  P L RI+ +V +     +  Y E  ++  ++++  +F+
Sbjct: 234 GILHDYIARQYPELQRILPEV-SIRRAYWTTYHETARDLLRVRSVADFL 281


>gi|215485407|ref|YP_002327838.1| predicted transcriptional regulator [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312964669|ref|ZP_07778920.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Escherichia coli 2362-75]
 gi|215263479|emb|CAS07805.1| predicted transcriptional regulator [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312290690|gb|EFR18568.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Escherichia coli 2362-75]
          Length = 308

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 15  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 75  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLIEPHIGEFLTRYPKTKIELIMDD 134

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187

Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           QEL  HN +         +   +F+ +A  +    E  +S   + N   S+++  + G+G
Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 246

Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 247 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302


>gi|86360420|ref|YP_472308.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284522|gb|ABC93581.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 299

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 131/286 (45%), Gaps = 10/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           V   V  SGSF  AA  L L+ S +SR ++ LE+ +G++L  R  R L LT+ G++ +  
Sbjct: 12  VLAAVVESGSFARAAVALGLTASGVSRAVARLESRIGVRLLERTTRSLRLTDDGTRFYEQ 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   +E        ++    G+LRI       + +L  NL  FL  YPD+QI+++  
Sbjct: 72  VVPLLGGIEEAAAYAAGTTQTVRGRLRINVDPYFSRLILGPNLGTFLDRYPDLQIEVVTR 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+  D+  D  D A+R  +    +SLI R+L    +   AAP YL     P    +L  H
Sbjct: 132 NEIGDLVADGMDVAVRFGEIPAKNSLIARQLFRTRVITVAAPSYLARHGTPKLPVDLTDH 191

Query: 190 NLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             I + D  P     F W     +   PI E R   L VN   + +  C+ G GIA +  
Sbjct: 192 TCIQYQD--PLTGRAFEWELRRGKKVVPI-ETRGRVL-VNDAGTALATCLAGIGIAQVFS 247

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +K   D+  LV +  D    +F ++  Y        K++AF +F
Sbjct: 248 LGMKPYIDSGQLVDLYPDWPDETFPLHCFYTSRHHVPAKVRAFIDF 293


>gi|296155952|ref|ZP_06838791.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893458|gb|EFG73237.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 311

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 145/291 (49%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +A + SF  AA  L +S +  +R +  LE  +  +L  R+ R L+LTE+G    
Sbjct: 7   MRVFINIADTMSFGQAAANLGISNAMATRYLEQLEAHLNTRLVNRNTRSLSLTEEGEIYS 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V  ++E  +      +++P+G LRIA       + L   L+E+L  YP++++ + 
Sbjct: 67  KGCRNVLDEIEEIETVTIRGTIEPAGTLRIAAGASFSLSSLTPLLQEYLRQYPNVRLSVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  D  I L K I  ++LI+R L+++   A A+P YL     P    +L 
Sbjct: 127 LLHQHVDFVKEGFDVGIVLPKQIGGTTLIKRSLLSVRPIAVASPSYLAVKGVPSRPADLT 186

Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIAL 243
            H  +     +     D +W+ A  DR   E R++    L VN+ L + Q  + G GIA+
Sbjct: 187 SHTFLA----LTAASHDGDWIFAAPDRR--EKRVTLDAALMVNNALMLRQAALAGMGIAV 240

Query: 244 LPD-YIVKD--NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LP+ +++ D  +  L++++ D  +      +   Y +    + K ++F +F
Sbjct: 241 LPENHVLNDLRSGTLMQVLTDFRITNADKELALVYADRRHISAKTRSFVDF 291


>gi|296105251|ref|YP_003615397.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059710|gb|ADF64448.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 299

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +++F  VA   SF+ AAE L L + S+SRQI  LE  +G +L +R  R ++LT+ G  
Sbjct: 5   NAMQLFVRVAELESFSRAAETLTLPRGSVSRQIQALENRLGTQLLHRTTRRVSLTQDGMV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   L+      Q      SG+LR+   + + +NL+   L  FL  YP I+++
Sbjct: 65  YYERAKDLLANLDELDGMFQHDPSSISGRLRVDMPVGVARNLVIPKLPAFLQQYPGIELE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC +R+   ++ S LI R L  + +   A+P YL     P ++ +
Sbjct: 125 LSSSDRLVDVIREGFDCVVRV-GTLKDSGLIARPLGKLTVINCASPDYLTRFGYPETLDD 183

Query: 186 LDKHNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H +I +  ++   P+  E +N   T     G      L VNS  +    C+ G GI 
Sbjct: 184 LASHAVIHYAAMLGTRPQGFEFYNGSTTQWVKTG----GVLTVNSTETYHAACIAGLGII 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            +P   V+D+     L+ ++         V   YP
Sbjct: 240 QVPRVGVRDSLRTKKLIEVLPQYRAEPMPVSLIYP 274


>gi|237731565|ref|ZP_04562046.1| LysR family transcriptional regulator [Citrobacter sp. 30_2]
 gi|226907104|gb|EEH93022.1| LysR family transcriptional regulator [Citrobacter sp. 30_2]
          Length = 301

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 144/295 (48%), Gaps = 24/295 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   G F  AA+ LHL + ++++ I  LE ++G KL  R  R ++LTE+G   +
Sbjct: 1   MNIFVQVVEQGGFARAADVLHLHRPAVTKAIQHLEDDLGAKLLNRTTRKVSLTEEGDAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T  +   ++        +   P GKLR+   + L  ++L   LK+F   YPDI++ L 
Sbjct: 61  QRTKILLSDVDDIMASFSPAR-PPRGKLRVNAPLSLAHSVLVPALKDFQSRYPDIEMVLT 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ ID+  +  DC IR+ + +Q S+LI R+L  + M   A+P YL+    P   ++L 
Sbjct: 120 STDRRIDMLAEGIDCMIRIGE-LQDSTLISRRLGEVKMVTCASPDYLQKQGVPQVPEDLS 178

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +H  + F     +  E   W   V+R       P G  RIS   V++   ++  C+ G G
Sbjct: 179 RHQALNF--FSERHREALEW-TFVNRGKTESFTPAG--RIS---VDNSDILLTGCLSGLG 230

Query: 241 I-----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I     A+L  Y+   +  LV ++ D    S  V   YP+      +++ F +++
Sbjct: 231 IIRGVHAVLAPYL--QSGQLVEVLADYTGESKPVSVLYPDRRHLAPRVRVFIDWL 283


>gi|209519074|ref|ZP_03267881.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209500516|gb|EEA00565.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 307

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 143/315 (45%), Gaps = 29/315 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALTRLEQKLDTALVRRTTRRLHLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    R    +   LE  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGDAFLRRARAILDALEEAEESVARGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  + + +D+     D AIR+   +Q S+L  R L    +   A+P YL    EP
Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRI-GALQDSTLHARALGESRLRVLASPAYLAGHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIG----------EPRISCLQVNS 227
            ++  L  H LI F    P+ +  +   +      R  G          EP I+    +S
Sbjct: 180 TTLDALRAHRLIGF--TAPEHLNRWPLRDGGRATKRATGQRDDAALLKIEPSITA---SS 234

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNT 280
             ++ Q  + G GIA L D++   +       P L  ++ D   P   VY+   ++    
Sbjct: 235 GETLRQLALSGWGIACLADFMTAADVREKRLVPILGNLLVDERQPVHAVYY---QSASLA 291

Query: 281 GKLKAFRNFIFLKAR 295
           G+++ F +FI  + R
Sbjct: 292 GRVQCFLDFIAARVR 306


>gi|126452605|ref|YP_001065734.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|242316354|ref|ZP_04815370.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|126226247|gb|ABN89787.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|242139593|gb|EES25995.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 299

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP I ++
Sbjct: 65  LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLCDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H L+ +       +  + W+    V R     R++   VNS  + +  C+ G G   
Sbjct: 184 LERHRLVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGPIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ D       +   YP     + + + F  ++
Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290


>gi|323492857|ref|ZP_08097999.1| transcriptional regulator, LysR family protein [Vibrio brasiliensis
           LMG 20546]
 gi|323312928|gb|EGA66050.1| transcriptional regulator, LysR family protein [Vibrio brasiliensis
           LMG 20546]
          Length = 319

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 1/182 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V + GSFT AA    +  S++S+QI  LE ++G++L  R  R  +LT  G ++
Sbjct: 6   QLSLFIDVVQQGSFTKAAALNDMDNSALSKQIKKLEADLGVQLLNRSTRSFSLTPAGEEI 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +   L   Q        +P G++R+     +GQN LQ  + EFL  YPD++I+L
Sbjct: 66  LQQAHNLVGTLHHVQSIADSYHAQPKGRIRVTAPFHIGQNHLQPVITEFLKTYPDVEIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +LD+K  DI  D+ D A RL + +  SSLI RK+  I     A+  +++   EP + +EL
Sbjct: 126 LLDDKRSDIISDHFDVAFRLGR-LDDSSLIARKIADIRAVILASNKFIERYGEPKTPEEL 184

Query: 187 DK 188
            K
Sbjct: 185 VK 186


>gi|229514467|ref|ZP_04403928.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229348447|gb|EEO13405.1| transcriptional regulator [Vibrio cholerae TMA 21]
          Length = 301

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 AEHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|221211328|ref|ZP_03584307.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
 gi|221168689|gb|EEE01157.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
          Length = 322

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 140/292 (47%), Gaps = 19/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAETLAMPRASVTTTIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q+   KP+G LR+     LG+ L+  +L  F   YPDI + L 
Sbjct: 67  EHCVKILSEIAEADASFQKG--KPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPDITLDLG 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     AAP YL    EP  I +L 
Sbjct: 125 LSDRPVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLRRVTCAAPDYLARHGEPREIADLA 183

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            H  + F     G  +P       W+  +D +P+     + + VN   + +   + G G+
Sbjct: 184 GHYAVNFRATQGGRAVP-------WVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFGM 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                ++V  N    +LV ++ D       +   YP     + K++ F ++I
Sbjct: 237 IQPTLFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWI 288


>gi|167587367|ref|ZP_02379755.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 302

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 139/290 (47%), Gaps = 8/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE+ +G++L +R  R  TLT++G
Sbjct: 5   DLPALETFARIVSAGSLSAAARELDLSLSVVSKRLAHLESRLGVRLLHRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  +Q+     SG LR+    +LG+  L   + EF   +P + 
Sbjct: 65  AQFHAQVLRILAEIEQAEALMQDRRGTVSGLLRVTAPGELGRLRLAPLVAEFQRRHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  SS+I R+L         AP YL    EP   
Sbjct: 125 VQLMLTDSVVDLLAHEIDVAVRI-GSLADSSMIARELAPNRRVLCTAPAYLAEHGEPAHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H  I  G+ + +    FN        +G    + L  N   +     + G+GIAL
Sbjct: 184 GELCRHRCIVMGEQL-RAEWRFNGEGGA---VGVEVTAALLTNDGGAARTLALAGAGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V    +   LVR++     P+  ++  YP       +++AF +F+
Sbjct: 240 KSIWDVGPDLEAGRLVRVLPAYAAPAAPLHAVYPGGRHLAMRVRAFVDFV 289


>gi|254284680|ref|ZP_04959647.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|150425465|gb|EDN17241.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
          Length = 301

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGEIFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 AEHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|153010934|ref|YP_001372148.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562822|gb|ABS16319.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 297

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 140/297 (47%), Gaps = 13/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF     SGS + AA +L +S     +QI  LE  +G++L  R  R  +LT+ G   +
Sbjct: 7   MRVFVKAVESGSISSAAHELEMSSQLAGKQIRALELGLGVRLLTRTTRRQSLTDSGQVFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +  + E+  +P G+LR++  +  G + L   L E+L  +P++ + L 
Sbjct: 67  ERAKNILAEMDLAEALMAETRSEPRGRLRVSAPVTFGSHALAPELSEYLRRHPEVSVDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+++D+  +  D   R    +  SSLI ++L    +   AAP Y+ +     + Q+L 
Sbjct: 127 LTNRNVDLVEEGFDVIFRA-GDLPDSSLIAKRLAPYRLILCAAPAYMDSASSLKTPQDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIALL 244
           +H  + F     +     +W  +   P GE  IS       NS  ++    + G GI   
Sbjct: 186 EHECLIFTHSSLRT----HW--SFIGPEGEVTISITGRFCANSGEALRAAALSGMGILFQ 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P  +V D   +  L+R++ +   PS  ++  Y    + T KL++F +F   K  D K
Sbjct: 240 PYELVADEISSGKLIRLLPEYEPPSRALHALYASDRQMTPKLRSFLDFATEKFSDGK 296


>gi|71737267|ref|YP_274637.1| LysR protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557820|gb|AAZ37031.1| LysR protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 310

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 143/296 (48%), Gaps = 18/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + ++L  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLL-RTTRKVNVTADGA 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L +++  P G+LR+         LL   L  F   YPDIQI
Sbjct: 63  AYYERVVRLLADMDDAETSLSDATSLPRGRLRVDVPRPFASMLLMPALPGFHARYPDIQI 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R  + I   SLI R++  + +  YAAP+YL     P+  +
Sbjct: 123 DMGVSDRIVDMIGENVDCVVRGGE-ITDQSLIARRVGDLQLGVYAAPYYLTRMGTPVHPR 181

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ +        +P  M        V    G   ++    N+Y++     + 
Sbjct: 182 ELEDSAHRIVGYLWARTSKALPYAMHRDGEKVHVQ---GRYALAVDDGNAYIAA---GLA 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LPDY+ + +    +L+ + +D    S  +Y  +P     + K++ F ++I
Sbjct: 236 GMGILWLPDYMARQHQVRGDLIPLFKDWQLDSMPMYVAFPPNRHISIKVRVFIDWI 291


>gi|320181668|gb|EFW56583.1| Putative LysR-like transcriptional regulator [Shigella boydii ATCC
           9905]
          Length = 307

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 14  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 74  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 133

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 134 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 186

Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           QEL  HN +         +   +F+ +A  +    E  +S   + N   S+++  + G+G
Sbjct: 187 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 245

Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 246 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 301


>gi|218698799|ref|YP_002406428.1| putative LysR-like transcriptional regulator [Escherichia coli
           IAI39]
 gi|218368785|emb|CAR16531.1| putative LysR-like transcriptional regulator [Escherichia coli
           IAI39]
          Length = 339

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 151/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 46  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 105

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 106 VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 165

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 166 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 218

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 219 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 275

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 276 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 333


>gi|53718953|ref|YP_107939.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|167738007|ref|ZP_02410781.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei 14]
 gi|167815188|ref|ZP_02446868.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei 91]
 gi|167845144|ref|ZP_02470652.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei B7210]
 gi|167902144|ref|ZP_02489349.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei NCTC 13177]
 gi|52209367|emb|CAH35312.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
          Length = 299

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP I ++
Sbjct: 65  LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H  + +       +  + W+    V R     R++   VNS  + +  C+ G G+  
Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ D       +   YP     + + + F  ++
Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290


>gi|107027592|ref|YP_625103.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693696|ref|YP_839229.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896966|gb|ABF80130.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651696|gb|ABK12336.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 359

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 138/296 (46%), Gaps = 11/296 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 53  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 112

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LR+ +T   G+ ++   L++F   YPDI + L+L
Sbjct: 113 CRPGIEHLAQALEDMRELRSGPPSGHLRVGSTPGFGRKVIAPLLRDFHAQYPDITLDLLL 172

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++  D S D  D A R  + ++ S+++ R+L+ + M   A+P Y      P  + EL +
Sbjct: 173 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAHRHGLPRHVDELAR 231

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  I       +  E   W   +D    + +++     N    +++  + G GIA LP Y
Sbjct: 232 HRCINLCTASGRVTE---WEFRIDGVTQQRQLAAHHTFNDIDLVVRAALDGLGIAQLPAY 288

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298
            V D   +  LV  +          Y CY        +++ F +++    +ARD +
Sbjct: 289 QVCDLLADGRLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTRARDLQ 344


>gi|332716844|ref|YP_004444310.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325063529|gb|ADY67219.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 309

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 137/294 (46%), Gaps = 8/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD L+ F  VAR+G  + AA  L  S +++SR I  LE  +  KLF R+ RG  LT  
Sbjct: 9   FTWDDLQYFLAVARTGQLSSAARSLRTSHATVSRHIDRLEFSLKTKLFERNPRGYELTTV 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +  + E  Q ++ ES     G +R++             LK+F + +P I
Sbjct: 69  GRRLVDTVERIEAEAERLQSDISESGSLLRGVVRLSAPEGFSNFFFVERLKDFAVTHPHI 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++++   + + +S   AD A+ L  P ++   I  ++V   +H YA+  YL +  +   
Sbjct: 129 MVEMVTIQQIMALSKKEADVAVTLDPP-KAGPYINEQIVDYTLHIYASRSYLASHPKITR 187

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L  H  I +  DLI       N++  V  P   P     Q +S  + +   + G G+
Sbjct: 188 REDLPDHFFIGYVQDLI--FSPGLNYMRDV-MPGLRPN---FQSSSIFAQLTATLSGRGL 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LP++I    P+L  ++E  +      +    + L N  ++++  +FI   AR
Sbjct: 242 CILPNFIAARFPDLQMVLEGEVELRRGYWLTSHQDLANVPRVRSLMDFILTTAR 295


>gi|91978809|ref|YP_571468.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB5]
 gi|91685265|gb|ABE41567.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB5]
          Length = 311

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 9/251 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF+ AA +L LS+ ++S+ ++ LE  +G +LF R +R L LT+ G
Sbjct: 13  DFEALAIFAKVVELRSFSAAAAELTLSKPTVSKAVTRLEARLGARLFNRTSRRLALTDAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +++    E  + E    S  P G +R+A  +  G  ++   L +FL  YP++ 
Sbjct: 73  HRLAERATQLLADGEAAESEALAQSAAPRGLVRLAVPMTFGVRVIAPLLPDFLAAYPEVS 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D  +R+   +  SSL+ R+L  +  +  AA  YL     P   
Sbjct: 133 IDLHLSDAMVDLIGEGFDAGVRIAS-LPDSSLVARRLCAMPRYTVAAKAYLARYGRPTHP 191

Query: 184 QELDKHNLITFG-DLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             L +H    +     P      N        RP G      L+VN+  +++   V G G
Sbjct: 192 MHLAEHRCFGYAYRTTPNVWSYTNARGEQAAVRPSGP-----LRVNNGEAVLPAVVAGLG 246

Query: 241 IALLPDYIVKD 251
           IA LP++IV +
Sbjct: 247 IADLPEFIVGE 257


>gi|30249514|ref|NP_841584.1| transcription regulator LysR [Nitrosomonas europaea ATCC 19718]
 gi|30138877|emb|CAD85455.1| Bacterial regulatory protein, LysR family [Nitrosomonas europaea
           ATCC 19718]
          Length = 305

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 142/289 (49%), Gaps = 6/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  V  +GS + AA+++ +++S +SR++  LE  +G++LF+R  R + LT+ G 
Sbjct: 4   FENMNAFVRVVETGSISAAADRMDIAKSVVSRRLKELEEHLGVELFHRTTRQMNLTDSGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++ +  +   +   +    +   +  G L++A  +  G   L   +  FL  +PDI+ 
Sbjct: 64  AFYQQSVRILADVLEAEHATSQFHGRLKGHLKVAVPLSFGLMHLGAAISTFLQTHPDIEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  +++ +D+  +  D AIR+   +  SSLI R+L  I     A+P YL+    P + +
Sbjct: 124 DLDFNDRQVDLLAEGFDLAIRIAN-LPDSSLIARRLAPIQAVMCASPAYLERMGTPQAPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H  + + +L+    +++N   T    I    I  L+ ++   +    V G GI LL
Sbjct: 183 ELIRHRCLVY-NLVSHS-DNWNVYGTTGELIKTRIIPYLKASNGEFLRDAAVDGLGIVLL 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +IV        L+ I+          Y  YP+    + +++AF +F+
Sbjct: 241 PTFIVYREIQRGALIPILTGYHYAQLAAYAIYPQTRHLSQRVRAFVDFL 289


>gi|70732141|ref|YP_261897.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346440|gb|AAY94046.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 301

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 138/292 (47%), Gaps = 14/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L +R  R L+LT  G ++ 
Sbjct: 7   MRVFVTVVDLGSQSAAADHLDLSRPVVSRYLAELEDWVGARLMHRTTRKLSLTAAGGEIL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++       Q  + E    P G LRI+ +   GQ+ L   + +++  YP + I L 
Sbjct: 67  PRCRQMLELSSDMQAAVGEPDDAPRGLLRISVSTSFGQSQLADAVADYVKRYPGVSIDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  +  D AIR    +   +LI R+L        A+P YL+    P  ++EL+
Sbjct: 127 MLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLTVCRSVICASPAYLREHPAPQRVEELN 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +HN +T   FG  +    +D   ++        P    +  N   ++++  + G+GIA+L
Sbjct: 186 RHNCLTHSYFGKSLWHFEQDGEQVSV-------PVQGNISANEASTLLRTTMAGAGIAML 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P Y   +      LVR++      +  +Y  Y         L++  +F+ L+
Sbjct: 239 PSYQAGEYIKRGELVRLLPHAEPRTMNMYAVYASRKHMPATLRSMLDFLVLR 290


>gi|107026140|ref|YP_623651.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692676|ref|YP_838209.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170738075|ref|YP_001779335.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895514|gb|ABF78678.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650676|gb|ABK11316.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169820263|gb|ACA94845.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 303

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 136/302 (45%), Gaps = 11/302 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +R+F  V   G+FT AA QL +  S +SR+I  LE ++G++L YR  R +++TE 
Sbjct: 1   MDLESIRIFLRVVERGNFTAAATQLDMPLSRVSRKIKQLEEDLGVQLLYRTTRRVSVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     +++    +P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYERCLRAEEILLDADRQVRALRTEPEGTLRVLVPYAIGLFELEPALAEFRRRYPLV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  S  + R L   H    A+PHYL     P +
Sbjct: 121 QLVLIYDNSALDLVEHGFDVALRT-GVLSDSGYVARSLGWSHAKFAASPHYLDRAGRPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            Q+L  H+++  G   P         A    D P+    IS    N  +++++    G G
Sbjct: 180 PQDLADHDILFVGRDTPGLTLRLTNAAGDVADVPVRPVLIS----NESVTVLRQAASGGG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IAL+  +      ++  L  ++ D   T    ++  YP+      K++AF  F+      
Sbjct: 236 IALISTHFTTRRLESNELEIVLPDWHRTDDVELHALYPKRATLDSKVRAFVEFLTEVFTA 295

Query: 297 WK 298
           W+
Sbjct: 296 WR 297


>gi|170694019|ref|ZP_02885175.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141091|gb|EDT09263.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 366

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G    
Sbjct: 7   MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP +   + 
Sbjct: 67  ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P   + L 
Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGTPTRPEHLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  ++         E +        P GE R+   + +  N+   + Q+ +LG GIA+L
Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|115360564|ref|YP_777701.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285892|gb|ABI91367.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 305

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 136/291 (46%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   
Sbjct: 6   SMRVFTRIVETGSFTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRISLTEDGQAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V  +++  +  + ++   P G+L++     + + ++   L EFL  +P+I I+L
Sbjct: 66  YERCVGVLREIDDMEAAVSQARNVPRGRLKVNLPPAMAKQIMVPALPEFLAAHPNISIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ ID+  +  DC +R+   +  S +I R++ ++     AAP YL  C  P ++ EL
Sbjct: 126 GVTDRQIDLVGEGVDCVVRI-GALDDSGMIARRIGSLTTCTCAAPAYLDRCGAPETVDEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
            +H  +    +         W   VD   GE RI      + VN   + ++  V G G+ 
Sbjct: 185 AQH--VAISHISADTGRPRPWDYVVD---GETRIVQMCGTVAVNDADTYIECGVAGIGLI 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               Y+V+    +  L  ++ D   P   +   YP       KLK F +++
Sbjct: 240 KTSLYLVEPYLKSGRLREVLTDFNAPPRPISILYPPNRHTPVKLKIFVDWL 290


>gi|326795005|ref|YP_004312825.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326545769|gb|ADZ90989.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 298

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 140/294 (47%), Gaps = 16/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V + GS + AA     +Q ++ R I  LET VG  LF R   GL  TE+  
Sbjct: 7   WELYRSFLAVLQEGSLSAAARATGSTQPTLGRHIDELETHVGYSLFIRTQSGLVPTERAV 66

Query: 65  KLHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            L ++  ++ H  +T  ++ L       +G +R+ T+  +G  +L   L EF    P I+
Sbjct: 67  SLEKLALDMSHLAQTFERVALSNEDGIINGTVRLTTSDIVGVEVLPAVLSEFQKDNPKIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+L +   D+    AD A+R+ +P Q S LI RK+ T      A+  Y++N   P + 
Sbjct: 127 IELVLSDMPQDLLNREADIAVRMFRPKQ-SQLIARKVGTCKFGFCASKRYIENHALPKTA 185

Query: 184 QELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--G 238
           +EL +H LI +    D I +   D  +   VDR +   R          +I+Q  ++  G
Sbjct: 186 EELRQHPLIGYDKETDFIRRNTRDLGF--DVDRSVFNYRADS-------NIVQLALIRAG 236

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI +    ++K + NL+ I+E  I     V+    E L+N    KA  + + L
Sbjct: 237 LGIGICQLAVIKYDNNLIPILEGAIKLELDVWVTMHEDLRNNPLYKAVFDALVL 290


>gi|319794055|ref|YP_004155695.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596518|gb|ADU37584.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 310

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+VF  VA +GSFT AA++L L +++IS  +  LE  +G +L +R  R ++LT  G  
Sbjct: 5   DLLKVFLSVAETGSFTRAADRLALPRAAISTAVQQLEARLGSRLLHRTTRRVSLTPDGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   +E  + +   +    SG+L++     + + L+   L +F   +P I+++
Sbjct: 65  LLERARALVTDMEDIEQQFLPAHSNVSGRLKVDVPSRIARLLIAPALPDFFARFPGIELE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+ ++  DCA+R+  P+ SSSL+ R L    +   A+P YL     P +  +
Sbjct: 125 LGSSDRAVDLVLEGVDCALRV-GPLASSSLVARPLGHFTLINCASPAYLARHGTPQTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  + +    P       W    D      R+ S +  N+  + +   + G G+  +
Sbjct: 184 LPAHLAVNYAS--PTSGRAAPWEWQRDGETATLRMRSQVAANNAETYIACALAGLGLIQI 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y V+ +     LV ++ D       V   YP     + +++AF  ++
Sbjct: 242 PAYDVRGHLAAGELVEVLADARAEPLPVQLVYPHRRNLSRRMQAFAGWL 290


>gi|78066378|ref|YP_369147.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967123|gb|ABB08503.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 299

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 129/289 (44%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   A + SF  A   L +S S I + ++ LE  +G++LF+R  R + LT +G+   
Sbjct: 6   LNVFVQAADTRSFVAAGRVLGISASGIGKSVTRLEQSLGVRLFHRSTRSVALTTEGALFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  Q EL E+S  P G+LRI   + +G   L      F   YP+I++ L 
Sbjct: 66  ERARRILAEFDAAQAELSEASSVPRGRLRIGLPM-VGDPFLP-VFSAFRQRYPEIELDLD 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            DN+  DI  +  D  +R    +  S L  R L    M    AP Y      P   +EL 
Sbjct: 124 FDNRMADIIEEGYDAVVR-SGDVDDSRLTARPLGRFRMMLVGAPDYFARRGTPSHPRELV 182

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H+ I F   +P   +   W    D    EP +   + +  N+  + M + + G GIA  
Sbjct: 183 EHDCIQF--RMPNTGKLQTWQLRCD-AGDEPELRLPTAITCNTNEARMYFAITGVGIAYA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++  K   +   LV +++D      T    +P     T +L+AF +F+
Sbjct: 240 SEFSAKQALEAGQLVTVLDDYTAEQNTFQLLWPSGRHVTPRLRAFIDFV 288


>gi|254252031|ref|ZP_04945349.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
 gi|124894640|gb|EAY68520.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
          Length = 301

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ EL
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R++  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWTFQEDGKVVSIRVNGTMECSDGAVLHEWCLAGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + V  +     LV +++    P   ++  +P+
Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQ 274


>gi|307257242|ref|ZP_07539013.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864284|gb|EFM96196.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 297

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 33/307 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           ++VF  VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+ G    
Sbjct: 7   IQVFLTVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQTV 66

Query: 65  ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               K+  +TS +     T Q EL+       G L+IA+    G   L   ++ FL  +P
Sbjct: 67  EYCKKMTELTSAIEQDFLTKQGELR-------GSLKIASNAAFGGTHLLNAIRTFLAKHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL      
Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPTYLAQHGTI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236
            S QEL  H+ +   ++  K      W    D   G+  +    S L +N   +++ + +
Sbjct: 179 HSPQELANHSYLAHANVNRK-----EWTFIKD---GQETVLELTSQLTINDTGALLNFTL 230

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--- 290
              GIA+LP Y ++    N  L  ++ D   P++ VY  YP   +    +++F +F+   
Sbjct: 231 ADGGIAMLPKYFIEQQLKNKQLQIVLPDWQMPTYQVYAVYPSRRQLPQTVRSFVDFLVEE 290

Query: 291 FLKARDW 297
           F    DW
Sbjct: 291 FEGKGDW 297


>gi|167900301|ref|ZP_02487702.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
          Length = 351

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LR+   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   ++L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPTYPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|331661667|ref|ZP_08362590.1| transcriptional regulator, LysR family [Escherichia coli TA143]
 gi|331060089|gb|EGI32053.1| transcriptional regulator, LysR family [Escherichia coli TA143]
          Length = 308

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 156/298 (52%), Gaps = 25/298 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 15  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 75  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187

Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           QEL  HN +         +   +F+ +A  +    E  +S   + N   S+++  + G+G
Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEF-EIEVSGKYISNDDESMIRMALNGTG 246

Query: 241 IALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 247 IIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302


>gi|161521851|ref|YP_001585278.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345901|gb|ABX18986.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 335

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 149/300 (49%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +V R  SF+ AAEQL +S + +S++I+ LET++G +L +R  R +T+TE G +
Sbjct: 36  EDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRIAMLETQLGTRLLHRSTRRVTVTEAGER 95

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + ++
Sbjct: 96  VFAHAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLNVR 155

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  +R+   I +  LI R+L   +    A+P YL     P ++ +
Sbjct: 156 LDLFDRLVDVAAEGYDLDVRIGDEI-ADHLIARRLAANYRVLCASPDYLARRGMPRTLAD 214

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------LQVNSYLSI------MQ 233
           L  H+ +   +               D P G  R++       ++V   LS       +Q
Sbjct: 215 LASHDCLAIKER--------------DHPFGVWRLNVRGDTVTVKVGGALSTNHGEVAVQ 260

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + G GI L   +      D+  L R++ D + P+  ++  Y E +  + K++   +F+
Sbjct: 261 WALAGRGIVLRSIWEAGPLIDSGALCRVLPDAVQPA-NIWAVYTERVAASAKVRVCVDFL 319


>gi|262043470|ref|ZP_06016593.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039212|gb|EEW40360.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 306

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 15/295 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AA+ LH+S++++++ I  LE+ + ++L +R  R L +T  G+
Sbjct: 4   FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLESRLRVRLLHRTTRKLGVTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPDIQI
Sbjct: 64  VYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  D  DC +R  + I   SLI R +  + +  Y AP Y++    P   +
Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGQ-ITDQSLIARHVGDLQIGVYVAPSYVERLGAPAHPR 182

Query: 185 ELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL   +    G L  +  + D   L + +  I       L V+   + ++  ++G G+  
Sbjct: 183 ELQNTDHCIVGFLSSRTSKIDPLVLCSENERIEITGNYVLAVDDGNAYLEAGLVGLGVIA 242

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT--------VYFCYPEALKNTGKLKAFRNFI 290
           LP+Y+   +  +       + P FT        +Y  +P       KL+ F ++I
Sbjct: 243 LPNYMAAAHQAV-----GALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWI 292


>gi|134282782|ref|ZP_01769485.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|134245868|gb|EBA45959.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 299

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIRELEGRVGARLLHRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP I ++
Sbjct: 65  LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H  + +       +  + W+    V R     R++   VNS  + +  C+ G G+  
Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ D       +   YP     + + + F  ++
Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290


>gi|304396484|ref|ZP_07378365.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304355993|gb|EFM20359.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 298

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 133/295 (45%), Gaps = 15/295 (5%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+F  W  + +F +VA  GSFT AAE+  L +SS+S++IS LE  +GI+L  R  R L L
Sbjct: 1   MAFRQWQDMALFALVAECGSFTGAAERAGLPKSSVSQRISQLEQRLGIRLLNRTTRQLNL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G +      E+    E     +      PSG+LRI +   +G  LL      FL LY
Sbjct: 61  TFAGERYLLHCQEMMQASERADQAIASLRENPSGRLRITSPAGIGATLLARCNAAFLRLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ + + + ++  D+  +  D A+R  +P Q SSLI R++        A+ HYL     
Sbjct: 121 PDVTLDVSISDEMRDLVQEGFDVALRTGQP-QESSLIGRRIGNCPRLLVASQHYLNQHPP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            L  Q+L  H  I            +N W+   D       +    +   L   +   LG
Sbjct: 180 LLHPQQLSAHRCIAH--------RAWNEWVLQRDGAFYRWLLPPGHLTDNLLYARESALG 231

Query: 239 -SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +GI LLP ++      +P LV ++ +       ++  YP    N+  L  F  F
Sbjct: 232 DAGITLLPHFLTDGAMADPRLVPVLPEWEVEGNELWLVYPGRKLNSPALARFIEF 286


>gi|300114335|ref|YP_003760910.1| lysR family transcriptional regulator [Nitrosococcus watsonii
           C-113]
 gi|299540272|gb|ADJ28589.1| transcriptional regulator, LysR family [Nitrosococcus watsonii
           C-113]
          Length = 307

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 16/303 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V  +GSF+ AA ++  S+S++S+ ++ LE ++G +L  R  R L+LTE G
Sbjct: 3   DLNLMAIFARVVEAGSFSEAARRMETSRSAVSKAVAKLEKDLGARLLNRSTRHLSLTESG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    + +  + E  +  +     +P G LR++ ++  G   +   L +F+  YPDI+
Sbjct: 63  AALVEYAARILEEAEQAEQVVSSLHTEPRGILRVSASVAFGTLHIAPALADFVAQYPDIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + + ++ +D++ +  D  IR+       +L+ RKL  +H    A P Y +    P   
Sbjct: 123 IDMAITDRPVDLAEEGYDMIIRVTGE-PDLNLVARKLAPVHRKLCATPEYFQQHGIPQIP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSG 240
           ++L  H+ + +        E   W  T   P GE   P    L++N   ++ Q    G G
Sbjct: 182 EDLVNHDCLDYT----LSGEQGYWHFT--GPEGEIAVPVSGPLRINDDDALAQAVRGGLG 235

Query: 241 IALLPDYIV-KD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           IALLP + V KD     L  ++   +     VY  Y        K++ F +F+   F   
Sbjct: 236 IALLPTFTVGKDLQKGRLQAVLSKYLPVKRYVYALYLPTRHLAAKIRVFIDFLLARFGPE 295

Query: 295 RDW 297
            DW
Sbjct: 296 PDW 298


>gi|209515838|ref|ZP_03264700.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503686|gb|EEA03680.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 367

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G    
Sbjct: 7   MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP +   + 
Sbjct: 67  ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P   + L 
Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGTPTRPEHLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  ++         E +        P GE R+   + +  N+   + Q+ +LG GIA+L
Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|313500382|gb|ADR61748.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 302

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 137/298 (45%), Gaps = 16/298 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L  R  R L+LT  G +
Sbjct: 5   NAMRVFVTVIDLGSQSAAADYLQLSRPVVSRYLAELEDWVGTRLMQRTTRKLSLTAAGQE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++       Q  +Q+    P G LRI+ +   GQ  L   +  ++  +PD++++
Sbjct: 65  TLPRCRQLLELAGDLQAAVQQPEDSPRGALRISVSTSFGQAQLVDAVAAYVRRFPDVKVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  D AIR    +   SLI R+L        AAP YL     P  ++E
Sbjct: 125 LQMLDRTVNLVDERIDLAIRTSNDV-DPSLIARRLSVCRSVVCAAPAYLNERGTPQRVEE 183

Query: 186 LDKHNLIT---FGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L +HN +T   FG  +        W  A   + +  P    +  N  +++ +  + G+GI
Sbjct: 184 LSQHNCLTHAYFGHSL--------WHFAVAGQQVAVPVSGNISANEVMTLQRAALAGAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP +   D      LVR++ +       +   Y         L++  +F+  + +D
Sbjct: 236 AMLPTFQAADAIRRGELVRLLPEAKPRELNLNAVYTSRKHMPATLRSMLDFLVQRFKD 293


>gi|221068730|ref|ZP_03544835.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713753|gb|EED69121.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 305

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 133/286 (46%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF+ +A+ GSF  A   L LS ++IS+ I+ LE  VG +L  R  R + LTE+G    
Sbjct: 7   LQVFHRIAQRGSFAEAGRSLGLSPAAISKNIAELEAHVGTRLIQRTTRRMALTEEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +     L      L      PSG L+++  +      +   L  FL  +P++Q+ L 
Sbjct: 67  EHVTRALDALADADSALCPFKAAPSGLLKVSAPMTFTLTQISCALPAFLERHPELQLDLH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +DI  +  D AIR    ++ SSLI R L ++     AAP Y +    P +  +L 
Sbjct: 127 LDDRRVDIVREGFDLAIRGSDRLEDSSLIARPLTSMPHVLCAAPGYFEKRGRPHTPADLS 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP-D 246
               I F       + +F     ++R     R S   V+S L++      G G++L+P  
Sbjct: 187 GLEHIRFSLSGHADVWEFEQGGRMERVAVNARYS---VSSSLAVRDALRAGFGVSLIPLP 243

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+ +D     L   +ED  T    +Y  YP     T KL+A  +F+
Sbjct: 244 YVEEDLRTGRLQAALEDWSTVQTALYAIYPSRQHMTPKLRALLDFL 289


>gi|293394432|ref|ZP_06638730.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291423057|gb|EFE96288.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 297

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 136/286 (47%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F      GSF  AA +  LS +   + +S +E+++ ++L  R  R L+LT+ G + +
Sbjct: 1   MQIFIAAVDEGSFAAAARRFKLSAAMAGKHVSAIESDLNVRLLQRSTRRLSLTDAGERYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE    E  +    P G LR+A  +  G   L   +  +L  +P++ + ++
Sbjct: 61  ERCKVILEVLEDANREASDVQKTPKGLLRVAAPVAFGAMHLGRIVSRYLEQFPEVSLDVV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K  D+  +  D AIR+ +  +  +L+ R+L    M   A+P YLK    P +  +L 
Sbjct: 121 LEDKYADLLENRIDVAIRVGR-FEDPTLVTRRLAPCRMVLCASPEYLKKHGTPETPDDLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +   + F   +     D+       RP        +  N+   +++  + G+GIA  P++
Sbjct: 180 RAPRLAFSQAV--SAGDWTIYDAQGRPHSIEGPCRMTANNIQLLLESVLAGTGIAYGPNF 237

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  ++     L++++    T   T+   YP A++   K+++F +FI
Sbjct: 238 VFGEHIKQGKLIKLLPAYRTTELTIQAVYPSAIRIPFKVRSFVDFI 283


>gi|254248231|ref|ZP_04941551.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124874732|gb|EAY64722.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 303

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 136/302 (45%), Gaps = 11/302 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +R+F  V   G+FT AA QL +  S +SR+I  LE ++G++L YR  R +++TE 
Sbjct: 1   MDLESIRIFLRVVERGNFTAAATQLDMPLSRVSRKIKQLEDDLGVQLLYRTTRRVSVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     +++    +P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYERCLRAEEILLDADRQVRALRTEPEGTLRVLVPYAIGLFELEPALAEFRRRYPLV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  S  + R L   H    A+PHYL     P +
Sbjct: 121 QLVLIYDNSALDLVEHGFDVALRT-GVLSDSGYVARSLGWSHAKFAASPHYLDRAGRPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            Q+L  H+++  G   P         A    D P+    IS    N  +++++    G G
Sbjct: 180 PQDLADHDILFVGRDTPGLTLRLTNAAGDVADVPVRPVLIS----NESVTVLRQAASGGG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IAL+  +      ++  L  ++ D   T    ++  YP+      K++AF  F+      
Sbjct: 236 IALISTHFTTRRLESNELEIVLPDWHRTDDVELHALYPKRATLDSKVRAFVEFLTEVFTA 295

Query: 297 WK 298
           W+
Sbjct: 296 WR 297


>gi|238788576|ref|ZP_04632369.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC
           33641]
 gi|238723489|gb|EEQ15136.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC
           33641]
          Length = 307

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 3/244 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  +  F  VAR G+FT AA QL +SQS++S  I  LE ++GI+L  R  R ++LTE G
Sbjct: 5   NYSYITAFLAVAREGNFTRAAAQLGVSQSALSHSIRTLEAKLGIRLLTRTTRSVSLTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +  +  + ++E       E   KPSG +RI  T    + +L   L++ +  YPD++
Sbjct: 65  EHLFKNLAPRFEEIEMELAAATEFRDKPSGTIRITATDYAIRTVLWPKLQKLVPEYPDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+D    DI  +  D  IR+   + +  +  R    I      A  Y KN   P + 
Sbjct: 125 LEIIIDYSLADIVAERYDIGIRMGDQVANGMVAVRISPDIRFVIVGASEYFKNHSRPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           QEL  HN +     +P     + W    +    + R+   L  NS   I+   + G+GIA
Sbjct: 185 QELTTHNCMNL--RLPTRGGLYLWELEKEGQKLQVRVEGQLIFNSIYEILNATLSGAGIA 242

Query: 243 LLPD 246
            +P+
Sbjct: 243 FMPE 246


>gi|116252887|ref|YP_768725.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257535|emb|CAK08632.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 299

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 131/274 (47%), Gaps = 15/274 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GSF    + + LS+S+  + +  LE  +G +L  R  R L+LT++G   +  
Sbjct: 11  IFMAVVDAGSFIAGGQAIGLSRSAAGKAVIRLEDRLGARLLNRTTRTLSLTDEGRMFYER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   ++  +  +   +  P G LR+A     G+ ++   L+++L  +PDIQ+++   
Sbjct: 71  GLQILVSVDEAEASVVGQNSTPRGVLRLAVPDAFGRLVVLPLLEKYLQAWPDIQVEVSFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  DI  +  D AIR+      + L+ R + T      A+P Y     EP  I +L  H
Sbjct: 131 DRPADIVEEGFDLAIRVGATATDNRLVSRVIATYKTRLCASPSYFAERGEPRDIDDLAVH 190

Query: 190 NLITFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           + + F     +       E  +W+    R       S L+++S  +I    + G GIALL
Sbjct: 191 DCLIFASRNQRQGWRFRGEGGSWIKAQGR-------SRLRLDSAEAIRDAALAGLGIALL 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           PD++V D+     L +I+ D+ T +  +   YP+
Sbjct: 244 PDFLVADDLAAGRLRQILADLETDNAKIVTLYPD 277


>gi|254363086|ref|ZP_04979143.1| possible LysR family transcriptional regulator [Mannheimia
           haemolytica PHL213]
 gi|153094753|gb|EDN75539.1| possible LysR family transcriptional regulator [Mannheimia
           haemolytica PHL213]
          Length = 291

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 139/294 (47%), Gaps = 24/294 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + LR F +VA++ SFT AA Q+ +SQS++S  I G+E  + IKLF+R  R ++ T
Sbjct: 1   MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEERLQIKLFHRTTRSISTT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L++    ++ +++     L E      G LRI     + +++L     EF+  YP
Sbjct: 61  EAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEHVFRDVLADKFAEFVKRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L+ +++ +DI  +  D  IRL   +    +  R    + M A A+P+YL     P
Sbjct: 121 EVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRISPDVKMTAAASPNYLAQHGTP 180

Query: 181 LSIQELD-----KHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISCLQVNSYL 229
            +  +L      KH L T G ++     D         PI       +P+ +    N +L
Sbjct: 181 KTPFDLTEHHCLKHRLATLGGILAWEFRD---------PITKKIVKFQPQGNLTANNGFL 231

Query: 230 SIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
            +  Y   G GI   P   ++   DN +LV I+ D        +  YP   +N+
Sbjct: 232 -LQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLYYPNRRQNS 284


>gi|327192070|gb|EGE59051.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 308

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R LTLTE G+ 
Sbjct: 5   EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKALGGTLLHRTTRKLTLTEDGAV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++E    ++ E     SG +RIA  +  G+  L   L  FL  +PDI + 
Sbjct: 65  FLERAGRIVREIEEAAADMAERRGALSGPIRIAAPVTFGRMHLGPALYPFLAQHPDIHLT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D++ +D + D  D  IR   P+  S L+  KL        AAP YL     P S+ +
Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPLADSRLVAWKLAPSRRLLCAAPDYLARQGMPTSLAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H  I + +   + + D+ +  T +  I       L +N+   +    + G GIALLP
Sbjct: 184 LNNHRGIFYTN---RGVADWRF-QTPEGAILVRAKPALGINNGDMLRDAAIAGLGIALLP 239

Query: 246 DYIVKD--NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFI 290
            +I        L+  ++    P    +Y  +P     + KL+A  + +
Sbjct: 240 AFIAGPAIREGLLAEIDVGHRPEAEFIYMAHPAGRNPSAKLRAIADHL 287


>gi|331651202|ref|ZP_08352227.1| transcriptional regulator, LysR family [Escherichia coli M718]
 gi|331050943|gb|EGI22995.1| transcriptional regulator, LysR family [Escherichia coli M718]
          Length = 329

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 151/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 36  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 95

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 96  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323


>gi|323524419|ref|YP_004226572.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323381421|gb|ADX53512.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 367

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G    
Sbjct: 7   MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP +   + 
Sbjct: 67  ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P   + L 
Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGTPTRPEHLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  ++         E +        P GE R+   + +  N+   + Q+ +LG GIA+L
Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|253689979|ref|YP_003019169.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756557|gb|ACT14633.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 301

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 7/286 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  V  +GSF  AAE LH+  S+++R I  LE+ +G +L  R  R L++T+ G 
Sbjct: 4   FQAMEIFIRVVDAGSFKKAAETLHVLPSTVTRSIKELESHLGARLLNRTTRALSITDVGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +   +   +    +   + +G +RI     L +N L   L +F   YP I +
Sbjct: 64  RYYDSCKAILRDVHAAESVTAQQKGELNGTIRIGAPPSLVKNFLIPALPDFCERYPGITL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L +  +DI     DC IR  +P   S L+ R+L   H +  A+P YL+    P ++ 
Sbjct: 124 DFHLGDATVDIVQHGIDCVIRTGEP-PLSRLVARRLGAFHWYICASPRYLEQHGHPATLD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  +  G +  +      W        +  P    + VN   + +   V G G+  
Sbjct: 183 SLKAHTAV--GYIHSRTGRSTRWGFHDEAHTVAMPLAGQISVNDTDAYVAAGVAGLGLIR 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  Y+V+    + +LVR+  D+  P   ++  YP++   +  ++AF
Sbjct: 241 IASYMVRQPLADGHLVRLFPDIGAPLEPIFILYPQSRHLSPAIRAF 286


>gi|217423539|ref|ZP_03455040.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217393397|gb|EEC33418.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 299

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP I ++
Sbjct: 65  LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H  + +       +  + W+    V R     R++   VNS  + +  C+ G G+  
Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRIALRARVT---VNSAEAYIACCLAGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ D       +   YP     + + + F  ++
Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290


>gi|83592377|ref|YP_426129.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83575291|gb|ABC21842.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 306

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 129/287 (44%), Gaps = 15/287 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA  GSF+ AAE+L LS+S +S+ +S LE  +G +L  R  R L+LTE G    
Sbjct: 7   METFTKVAELGSFSRAAERLGLSRSVVSKYVSALEDRLGARLVNRTTRRLSLTEVGEVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +           G LRI   +  G   L   +  FL  +P + + + 
Sbjct: 67  LRCQAILADLEEAEQAAGALHGAARGTLRINAPMSFGFRHLAAAIPPFLAHHPGLGVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+     D A+R+   +  SSLI  +L  +H+   A+P Y+K    P   ++L 
Sbjct: 127 LDDRFVDLLDAGFDVAVRIGS-LPDSSLIAVRLAPLHIVVCASPEYIKAQGAPERPEDLT 185

Query: 188 KHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            HN     L  FGDL P          +V      P     + N+  ++    V G G+ 
Sbjct: 186 GHNCLIYSLQRFGDLYPLVHAGGGEQVSV------PVHGRFRANNGDALRAAAVAGGGVM 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + P ++  D+     LVR++ +   P   +   YP     + K++AF
Sbjct: 240 ISPTFLCGDDLRAGRLVRLLPEWTGPEQGINAVYPHNRHVSAKVRAF 286


>gi|115352133|ref|YP_773972.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|170703341|ref|ZP_02894129.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|115282121|gb|ABI87638.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
 gi|170131754|gb|EDT00294.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 301

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ EL
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R++  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWAFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGYGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + V  +     LV +++    P   ++  +P+
Sbjct: 242 WWEVGGDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274


>gi|169633663|ref|YP_001707399.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169152455|emb|CAP01420.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii]
          Length = 300

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 141/296 (47%), Gaps = 13/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G+++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGEVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237
             S  EL  H +++  +   + ++    L   D  + + ++S   +  N Y+ + Q    
Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYM-LAQLASQ 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GIALLPD   +D   +  LV+I+ D        +  YP      G L A R FI
Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289


>gi|87118754|ref|ZP_01074653.1| Transcriptional Regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86166388|gb|EAQ67654.1| Transcriptional Regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 297

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 133/289 (46%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++  F VVA++GSFT A++ L  S++ +S Q+S LE  +G+KL +R  R L LT  G  
Sbjct: 6   EEMTTFAVVAKTGSFTQASKVLGKSKTYVSLQVSRLEDAIGLKLMFRTTRRLELTPSGLA 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++   ++  +  L+       G + ++  +  GQ  +   + EF L YPD+++ 
Sbjct: 66  YVDYCEQLLATIDEAERALEVLKGDMQGVISLSVPVSFGQVFMTQVIAEFQLKYPDVKVA 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L N   D+  +  D A+R+   +    L+  K+  + M  YAAP YL     P+  + 
Sbjct: 126 LELHNSVKDLKFESLDMAVRMSSEL-DEDLVAIKIGCLDMGVYAAPTYLAKYERPICPEN 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  H     G L     +   W   ++  +    I+  L +N Y  I +  + G G+  L
Sbjct: 185 LCHHT----GVLHSSVDKFHRWPLLIEGEVVLTEINWNLSINHYPLIRESAIEGKGLVRL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y+VK +     L  ++ D       +Y  YP       K + F +FI
Sbjct: 241 PSYLVKQDLIEKRLCEVLSDFKLEPDPIYLVYPYQGVLPLKTRVFIDFI 289


>gi|237809885|ref|YP_002894325.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237502146|gb|ACQ94739.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 303

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 143/301 (47%), Gaps = 13/301 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR       V  SGSF  AA++LH S++++SR I  LET +G++L  R  R + LTE 
Sbjct: 2   DRLRNLTALIAVVESGSFVAAAQRLHSSKAAVSRYIQELETYLGVRLLQRSTRRIALTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++ T ++   L+        ++ +  G +R+   +  G   L     EF+   P +
Sbjct: 62  GRDYYQRTKQILADLDDADSAAGANNSRLIGNIRVNAPLSFGTRYLAPLWAEFMERNPAV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + + L ++ ID+  +  D AIR+   +  S+L+ R+L   H    AAP Y++    P +
Sbjct: 122 TLDIELTDRRIDLLDEGFDLAIRIGN-LADSTLVSRRLADSHAVLCAAPAYVEKHGLPAT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGI 241
            + L +H +I+F  L    +  F   +  +R I  +PR   +  N+  +I    + G GI
Sbjct: 181 PEALTQHQVISFSYLPSGDVWHFQSASGEERAISLKPR---MHTNNGDTIRAVVLAGQGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARD 296
           AL P + +        L  I+     P+F ++  YP     + K+K   +++   L   D
Sbjct: 238 ALQPIFEISPELQEGKLQTILPGWFGPTFGIHAVYPSRKNLSLKVKTLIDYLAEKLAGTD 297

Query: 297 W 297
           W
Sbjct: 298 W 298


>gi|119898858|ref|YP_934071.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119671271|emb|CAL95184.1| putative LysR-family transcriptional regulator protein [Azoarcus
           sp. BH72]
          Length = 335

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 147/291 (50%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  V  + SF+ AA+ L L +++++  I  LE  + ++L  R  R L+LT+ G+
Sbjct: 4   FQAMQVFTRVVDANSFSRAADSLGLPRATVTNIIQNLERLLQVRLLNRSTRRLSLTQDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E T+   ++++  P G+LRI     LG+ +L   L +F   YP+++I
Sbjct: 64  AYYERCVAILADVEETESSFRDAASGPRGRLRIDVPASLGRLVLIPRLCDFHTRYPELEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DCA+R+   +  SSL+ R++ T  +   AAP YL+   EP +I 
Sbjct: 124 AIGMTDRPVDMVREAVDCALRVGH-LPDSSLVARRIGTFFLVTCAAPSYLERHGEPRTIA 182

Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           EL  H+ +  F  L  + ++   W   VD  + E ++   + VN   + +   + G G+ 
Sbjct: 183 ELANHSAVNYFSSLNGRTLD---WDFVVDGHVTEVKMKGVVSVNDGDAYLACALQGFGMV 239

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P ++     ++  L  ++         +   YP     + K++AF +++
Sbjct: 240 QMPRFMALPHLESGALREVLPQWSPAPMPISAVYPANRHLSPKVRAFVDWV 290


>gi|86145038|ref|ZP_01063370.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222]
 gi|85837937|gb|EAQ56049.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222]
          Length = 301

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 139/287 (48%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++AR G+FT AAE+L +S+S +SRQ+S LE ++G+ LF R  R L LT  G  L+
Sbjct: 10  IRSFVLIARLGNFTKAAEELDVSRSHVSRQVSSLEKQMGVTLFIRTTRTLRLTHAGQDLY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++   I   +   +  G +++      LG+ ++   + EF+ LYPDI I L
Sbjct: 70  ARCEQALDNIDQALIAAVDDVEEVRGDIKVNCVGGYLGEVIIADLVNEFMQLYPDISISL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+   ++ +  I RKL+ I M   A+P Y     +P   ++L
Sbjct: 130 DFSSNRVDLIEDAFDIAFRM-GSLEDAGFIARKLLDIEMGTLASPDYFARKGKPSHPKDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +T    + K    F  L    + +       LQ  +   ++Q    G+GI  +P 
Sbjct: 189 IHHDCLTGS--VRKW--SFQALDDTKKTVDVHVTGRLQCKNGRVLVQGAKSGNGIIRVPT 244

Query: 247 -YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y +++  +  L+++ E+ + P       Y        +++ F +F+
Sbjct: 245 IYCLQELNDGQLLQVFEEWVVPKVDFSAIYHRDRYQPSRIRTFIDFV 291


>gi|226942562|ref|YP_002797635.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226717489|gb|ACO76660.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 323

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 23/297 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA +GSFT AA +L L+ S +SR ++ LE+ +  +L +R  R + LTE G +  
Sbjct: 7   MRIFACVAETGSFTAAATRLDLTTSYVSRAVASLESHLRTRLLHRTTRRIALTEAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   +E  + E  ++  +P+G L++     +G + L   + E+   YP++   L 
Sbjct: 67  QRCEQILGYIEEAEAEASQAHARPAGNLKVHAVTGIGNHYLIKAVAEYSEQYPEVSFDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+  DI  +  D ++     +  S  I +KL  I+    A+P Y+     P +  EL 
Sbjct: 127 LANRTTDILEEGYDISVVTAPELADSGFISKKLGNIYSVLCASPLYIARHGLPRTPAELA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIAL 243
            H  +    L+   M    WL  ++ P GE  ++      QVN+  ++      G G+  
Sbjct: 187 AHRCL---RLVYPVMSLDKWL--LEGPDGEELVTVSQTHFQVNTVDAMTVALKAGMGVGA 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   +   + +LVR++ +    S  VY  YP            R ++  K R W
Sbjct: 242 LPVYSALESLQSGSLVRVLPEYTLYSLGVYALYPS-----------RQYLDAKTRTW 287


>gi|330980813|gb|EGH78916.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 303

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 11/305 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+FD + + +F  V RSGSF+ AA QL +  ++ISR++  LE ++  +L  R  R L LT
Sbjct: 1   MAFDLNDVALFVQVVRSGSFSQAARQLGMPSNTISRRVQQLEMQLDTRLLQRSTRKLVLT 60

Query: 61  EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           + G + + R    V   +E  + +L     +PSG +RIA   D         +  FL  Y
Sbjct: 61  QAGEEFYDRCVGAVDGGMEAAE-QLASGRDEPSGLVRIAAMADFFDFFSMDWVAGFLARY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178
           P +Q++ +L +   D+  D  D A R   P+Q S  + R+L+   H    A+P Y+    
Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDEGHDTMVASPAYIAAHG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            P S+Q L  H  ++    + +       L   D  + E  I+     N+  ++ +  + 
Sbjct: 179 MPDSLQSLHSHYCVS---AVHRGGVTAWRLLGPDTKMHEVHIASRFNANTAQALRKATLA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K 
Sbjct: 236 GLGIALLPATLIRSDLRDGRLVPVLPRYQRISHGLHVLYPSRQHLPPAVSAFIALVLDKL 295

Query: 295 RDWKF 299
           RD  F
Sbjct: 296 RDKAF 300


>gi|325522686|gb|EGD01198.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 305

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   
Sbjct: 6   SMRVFTRIVETGSFTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRISLTEDGQAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V  +++  +  + ++   P G+LR+     + + ++   L EFL  +P I ++L
Sbjct: 66  YERCVGVLREIDDMEAAVSQARNVPRGRLRVNLPPAMAKQIMVPALPEFLAAHPGISVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ ID+  +  DC +R+   +  S L+ +++ ++     AAP YL+ C  P ++ +L
Sbjct: 126 GVTDRQIDLVGEGVDCVVRI-GALDDSGLVAKRIGSLTTRTCAAPAYLERCGAPETVDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
            +H  +    +         W   VD   GE RI      + VN   + +   V G G+ 
Sbjct: 185 AQH--VAISHISADTGRPRPWDYLVD---GETRIVQMCGTVAVNDADTYIACGVAGIGLI 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               Y+V+    +  L  ++ D  TP   +   YP       KLK F +++
Sbjct: 240 KTSLYLVEPYLKSGRLREVLTDFNTPPRPISILYPPNRHTPVKLKVFVDWL 290


>gi|86356001|ref|YP_467893.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280103|gb|ABC89166.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 303

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 135/288 (46%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R L LTE G+ 
Sbjct: 5   EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKALGGTLLHRTTRKLALTEDGAV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++E    ++ E     SG +RIA  +  G+  L   L  FL  +PDI++ 
Sbjct: 65  FLERAGRIVREIEEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLTAHPDIRLT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D++ +D + D  D  IR   P+  S L+  KL        A+P YL     P S+ +
Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPLADSRLVAWKLAPSRRLLCASPDYLARQGMPRSLAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H  I + +   + + D+ +  T +  I       L +N+   +    + G GIALLP
Sbjct: 184 LNNHRGIFYTN---RGVADWRF-QTPEGAILVRAKPALGINNGDMLRDAAIAGLGIALLP 239

Query: 246 DYIVKDNPNLVRIME-DVI--TPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +I        R+ E DV     +  +Y  +P     + KL+A  + +
Sbjct: 240 AFIAGPAIREGRLAEIDVGHRPEAEFIYMAHPAGRNPSAKLRAIADHL 287


>gi|254502247|ref|ZP_05114398.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438318|gb|EEE44997.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 293

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 130/262 (49%), Gaps = 10/262 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    AA++L L+ ++++R+++ LE  +G +LF R   G  LT+ 
Sbjct: 1   MNWDDIRIFLGVARTGQILAAAKRLGLNHATVARRLTALEGSLGARLFDRSTSGCVLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+       +       + +L + + + SG +RI      G   L   L      +P +
Sbjct: 61  GSRFFDRAEMMEAAALAAEADLGDDTPEISGTVRIGAPDGFGVAYLAPRLGLLTRQHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL+  ++   +S   AD A+ + +P ++  LI  KLV   +  YA+  YL     P +
Sbjct: 121 TVQLVPVSRSFSLSRREADIAVTIERP-ETGRLIAGKLVDYALGLYASKTYLMERGIPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +L  H+LI +       +ED  + A+++      +   +  ++ S L   +    G+G
Sbjct: 180 PSDLSAHDLIGY-------VEDLLYSASLNYGAEFFKGWTARFEIASALGQTEAVKAGAG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDV 262
           I +L D+I + +P LV I+ D+
Sbjct: 233 IGILHDFIARADPCLVPILPDM 254


>gi|186476128|ref|YP_001857598.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192587|gb|ACC70552.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 300

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 137/288 (47%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA+   ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QIETFVTVAARGSLSAAAQAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTYEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H ++  +  +    VK SG LR++     G+  +   +  F + +PD+ I L
Sbjct: 66  LEDCQRIIHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPDVSISL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCAIRL + +  SSL+  KL        A+P YL     P ++ +L
Sbjct: 126 DLSDRMVDLVNEGFDCAIRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRAAPQTLADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
             HN +  G       +   W+      +   ++S  ++ +    + ++C+ G G+A   
Sbjct: 185 AHHNCLALG---ASANQQRGWVFQQGDKVVTIKVSGTMECSDGAVLHEWCLEGYGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +    +LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGADIAAGSLVSVLDNHAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|90412854|ref|ZP_01220854.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90326213|gb|EAS42640.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 299

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 133/297 (44%), Gaps = 14/297 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  +   GSF+ AA QL LS+  +S  +  LE  +G+ L  R  R +
Sbjct: 1   MDVSFEQLKSMVVFAKIVEQGSFSAAARQLGLSRGVVSYHLKKLEDHIGMPLLNRTTRSI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT+ G +  +    +  +     ++++    +P GKL I+  +++  + +   L  F  
Sbjct: 61  SLTDAGQRYFQRCKRISEEAAAANLQIENLREEPEGKLTISAPVNISMHTIVPALNTFKT 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP I+I L L +  ++I  +  D AIR   P+  S L  +KL+T+      +PHY    
Sbjct: 121 LYPKIEIDLNLTDDIVNIIQEGVDLAIR-GAPLADSGLYAKKLMTMKNILCGSPHYFNQH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P +  EL  H  + +     K       L    R         +  NS  +   + V 
Sbjct: 180 GIPRTPAELANHEWVVY-----KKTSKIQTLTKGTRSYNVKMQGSITTNSASARTAFVVG 234

Query: 238 GSGIALLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  LP Y    ++K    L  I+ED      T+Y  YP    N+ K++   +++
Sbjct: 235 GHGVGRLPIYDALPLIKAG-QLTPILEDYELSDITIYGVYPPRAANSKKMQLLLDYL 290


>gi|148545328|ref|YP_001265430.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148509386|gb|ABQ76246.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 295

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 10/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEQSLGTALFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ + ++ P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  LI RKL    +  YA+  YL       +
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQDYLDRAPPLRN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ I + D +    E    L  ++     P +   +  S ++       G GIA
Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRAPNV-VFRSTSVIAQQAAARAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +LP+Y+ + +P LVR++  + I  S+  + C    L  + +L+   +++ 
Sbjct: 235 VLPNYMARHDPTLVRVLPGETIQRSY--WICTRRELHKSVRLRVVWDYLL 282


>gi|167582358|ref|ZP_02375232.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 299

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S+V PSG LR+     +G+ ++   L EFL  YP I ++
Sbjct: 65  LYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPEFLDRYPQISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGLTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H  + +       +  + W+    V R     R++   VNS  + +  C+ G G+  
Sbjct: 184 LERHQPVNYASPSNGRIAPWEWVEGDAVRRVALRGRVT---VNSAEAYIACCLSGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ +       +   YP     + + + F  ++
Sbjct: 241 IPAYDVDAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAQWL 290


>gi|205353853|ref|YP_002227654.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273634|emb|CAR38623.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628963|gb|EGE35306.1| putative LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 310

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 144/294 (48%), Gaps = 19/294 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 13  RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 73  YQKGVNLLNAAKNLQDEVRSSHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDLRIRH 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 133 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239
            E          + +P  +    W  T +      +   +   + V+S  S+M + + GS
Sbjct: 187 LESLAQAEWIIHERLPTPLR---WSVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGS 243

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   T K++AF +F+
Sbjct: 244 GVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVTTKVRAFIDFL 297


>gi|187919739|ref|YP_001888770.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718177|gb|ACD19400.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 303

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 148/303 (48%), Gaps = 24/303 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S   D L  F  +A SGS T AA +L LS +++S+ ++ +E+   + L  R  R ++LT 
Sbjct: 4   SIQPDDLAFFSTLAASGSLTAAARELGLSTAAVSKHLAQMESRAAVSLVNRTTRRMSLTP 63

Query: 62  QG----SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +G    ++  R+ SE+    +  Q+ L  S   P G LR+  T+  G++ +   +  F+ 
Sbjct: 64  EGELYLTRARRILSEMD---DLAQL-LGGSQAAPKGLLRVNATLGFGRSHVAPLISRFVR 119

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P++ +QL L      +S D  D  +R  +P   + +I R++ +      A+P YL   
Sbjct: 120 RFPEVDVQLQLSVDPPPLSDDAFDVCVRFGEP-PDARVIARRVASNRRLLCASPRYLAER 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI----- 231
           R P S  EL +HN I     I +  + +  W  T  R   E +   ++V   L+      
Sbjct: 179 RAPRSPAELAQHNCIG----IRQGGDAYGVWRLTSGRGAAE-KTETVRVRGNLTTNDGEI 233

Query: 232 -MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            +++ + G GI +  ++ + +   +  LV ++ +  TP   +Y  YP+ L+ T ++KAF 
Sbjct: 234 AVKWALDGQGILMRAEWDIAEYLADGRLVHVLPEYRTPGADIYAVYPQQLQMTARVKAFV 293

Query: 288 NFI 290
           + +
Sbjct: 294 DML 296


>gi|254180243|ref|ZP_04886842.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184210783|gb|EDU07826.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 299

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP I ++
Sbjct: 65  LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H  + +       +  + W+    V R     R++   VNS  + +  C+ G G+  
Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRIALRARVT---VNSAEAYIACCLAGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ D       +   YP     + + + F  ++
Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290


>gi|311103237|ref|YP_003976090.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310757926|gb|ADP13375.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           1 [Achromobacter xylosoxidans A8]
          Length = 307

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 139/299 (46%), Gaps = 8/299 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA +  LSQ+++S+ IS LE  +   LF+R +R +TLTE G
Sbjct: 6   DLEGWAIFAKVAETGSFAKAAAEFSLSQATVSKSISRLEARMKTTLFHRTSRSMTLTESG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  + E+ E S    GK+R++  +  G   L   L  F+   PD+ 
Sbjct: 66  YAALERAARILEEGEAVESEVTEKSSSLRGKIRLSAPMSFGVTHLAPMLPPFMQANPDVA 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   +K  D+  +  D A+R+   +  S+L+ R+L ++ +    AP Y K    P   
Sbjct: 126 LEIEFSDKQADLVSERFDLALRISN-LVDSTLLARRLCSVRILLVGAPSYFKRAGRPKHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  + +  +  +    + +         +     L VN+  ++      G G+AL
Sbjct: 185 KDLAHHTALQY--MYARNGSSWRFRHEKHGDFSQSLPVHLNVNNAEALTPALQAGMGLAL 242

Query: 244 LPDYIV-KD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDW 297
            P+++  KD  +  L  +M+D       ++   P   +   +++AF  ++   L A  W
Sbjct: 243 QPEFLAWKDLQSGALETVMDDWQVDPIALHIVTPPGRRRPARVQAFIEYLAERLTAEPW 301


>gi|293413542|ref|ZP_06656191.1| LysR-like transcriptional regulator [Escherichia coli B185]
 gi|291433600|gb|EFF06573.1| LysR-like transcriptional regulator [Escherichia coli B185]
          Length = 308

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 151/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 15  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 75  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302


>gi|170683778|ref|YP_001742431.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|301020070|ref|ZP_07184200.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|170521496|gb|ACB19674.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
 gi|300398947|gb|EFJ82485.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|323976224|gb|EGB71317.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
          Length = 308

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 151/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 15  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 75  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302


>gi|146308586|ref|YP_001189051.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576787|gb|ABP86319.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 317

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 147/295 (49%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D  ++  F  VA  GS + AA+QL +++S +S+++S LE  +G +L +R  R +  T
Sbjct: 14  MKLDIQEIETFLRVAELGSVSLAAQQLGVAKSVVSKRLSDLERNLGARLLFRSTRKVAPT 73

Query: 61  EQGSKLHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           + G + +        +L++    +  ++ S+  +G LRI   +  G   L   L EF+  
Sbjct: 74  DSGQRFYHQAKAALAELQSAAEAVAFEDGSL--AGSLRILAPMSFGTLWLAPRLAEFMRQ 131

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P +++ L LD++  D   +  D  +R+ + +  S LI R+L +       +P Y++   
Sbjct: 132 HPQLELALQLDDRVSDFEREGYDLCLRISR-LHDSVLIARRLGSSPRVVCCSPDYIREHG 190

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P  +++L +H  I + +L    +  F+  A   RP+          N+  ++    + G
Sbjct: 191 APGRLEQLLEHPCIGYCNLSAGQLWSFDDPADPQRPLTLAAGGRFTSNNGEAMRDAALAG 250

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+A+LP +IV+ +     LV+++ ++      ++  YP A + + K++A  +F+
Sbjct: 251 LGVAVLPRFIVQRDLQAGRLVQVLAEIRPTDDQIHALYPRARRASPKVQALCDFL 305


>gi|190573113|ref|YP_001970958.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011035|emb|CAQ44644.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 291

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 24/294 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  VA  GSF  AAEQL +S   + + I  LE  +G  L  R+ R   LTE GS   
Sbjct: 7   MQAFVAVAECGSFAGAAEQLQVSAVMVGKYIQQLEAHLGTALLQRNTRRQRLTEAGSAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V  +++  + ++    V+P G LR++     G  +L   L   L   P + ++L 
Sbjct: 67  AGCRQVLEQVQQAEADVAGLQVQPRGLLRVSAPTTWGSCVLAPQLAGLLRAQPQLNVELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  D  D AIR+  P+ S  ++ R L    M   AAP YL+    P +  +L+
Sbjct: 127 LSNRRVDLIEDGFDVAIRV-GPLPSQEVVARPLPPYAMSLCAAPSYLRRRGTPRTPADLE 185

Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            H+          C+    W       LA  ++   E R++C   N  +++ +  V G+G
Sbjct: 186 GHD----------CLSHLAWRGGHGWQLANGEQVDWEARLTC---NDGVALREAAVAGAG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + L P  ++        L  ++ D +     ++  Y    +   +L+ F +F+ 
Sbjct: 233 LVLQPTALLAGEIAAGRLKPLLRDYLPEPRPMHLIYLPDRRPRPRLQCFVDFVM 286


>gi|170699264|ref|ZP_02890314.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135818|gb|EDT04096.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 301

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 142/302 (47%), Gaps = 18/302 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F  VA +G F+ A  +L+L+ SS+ R +  LE  +G  L  R  R +TL++ G+
Sbjct: 4   FSALRAFVEVAEAGGFSSAGRRLNLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   L      + +   +PSG LR++  +  G + +  ++  FL  YP + +
Sbjct: 64  VYYARAKQLLEALAEADALVADRGDEPSGPLRVSVPVAYGMHRIAPHVGAFLARYPRLDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D+     D AIRL +   S+ ++ R+L T   +  A+P YL     P +  
Sbjct: 124 DLQLTDARVDLVTGRIDVAIRLGEAAPSAEVVARQLGTFRRYVVASPDYLDAHGTPSTPG 183

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240
           EL  H  + F   GD       D +    V        ++    +++  +++   L G G
Sbjct: 184 ELVDHGCLRFHFGGDQQAWSFVDAHGATKV-------LVTGRLKSNHSEVLRAAALDGGG 236

Query: 241 IALLPDYIVKDN---PNLVRIME--DVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLK 293
           IALLPD+++  +     L R+ E  DV+  +    V   Y    + + ++ AF +F+  +
Sbjct: 237 IALLPDWLIDADVRAGRLRRLFEQYDVVPDAARSIVTALYLPNQRGSKRVTAFIDFVEAQ 296

Query: 294 AR 295
           AR
Sbjct: 297 AR 298


>gi|167031092|ref|YP_001666323.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166857580|gb|ABY95987.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 295

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 10/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEQSLGTALFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ + ++ P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  LI RKL    +  YA+  YL       +
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQDYLHRAPPLRN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ I + D +    E    L  ++     P +   +  S ++       G GIA
Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRAPNV-VFRSTSVIAQQAAARAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +LP+Y+ + +P LVR++  + I  S+  + C    L  + +L+   +++ 
Sbjct: 235 VLPNYMARHDPTLVRVLPGETIQRSY--WICTRRELHKSVRLRVVWDYLL 282


>gi|121611523|ref|YP_999330.1| LysR family transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121556163|gb|ABM60312.1| transcriptional regulator, LysR family [Verminephrobacter eiseniae
           EF01-2]
          Length = 314

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 126/289 (43%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W +   F  V   GS + AAE + LS  S SR ++ LE  +G +L  R  R L +T+ G 
Sbjct: 4   WTEYEFFVRVVELGSLSKAAEAMGLSNPSASRHLAALERRLGARLIERSTRRLFVTDVGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R        ++     +  ++  P G LR+  ++ L    +   L  F   YP+I++
Sbjct: 64  DFYRCCKRALDDMQEAVEAVNATTSNPVGVLRVTASLSLSMQHIAPLLPAFAQRYPNIRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++  N+  DI  +  D A+R R+    SSL+ R L T       +P YL+    P   +
Sbjct: 124 KVVAANRYYDIIDNNIDVALRTRESEPDSSLVIRSLATTRRVLAVSPAYLERHGAPRHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H L+ +    P  +         D  +  P    L+ N    +    V G GI + 
Sbjct: 184 ELAEHRLLLYTYHAPDSLT----FQRGDEAVTIPTKPMLEANDGQVLRVAGVQGLGIMVQ 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y++ D+     L+ +M D   P  +V   Y        K +AF +F+
Sbjct: 240 PMYVIYDDLVADRLIPVMTDWKLPPMSVNIVYQHRRLVPAKTRAFIDFL 288


>gi|182677955|ref|YP_001832101.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633838|gb|ACB94612.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 308

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 122/247 (49%), Gaps = 5/247 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  V  +GSF  AA +L ++  ++S+ +  LE   G +L +R +R  +LTE G
Sbjct: 5   DLEAWAIFAKVVETGSFAAAAAELGITGPTVSKALGRLEARFGERLIHRTSRRFSLTETG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +++  + E  + E Q  S  P GK+R+A  +  G   +   L EFL +YP++ 
Sbjct: 65  RVLAIRAAQILAEGEAIEAEAQAKSATPRGKIRLAAPMSFGLRHVSPVLPEFLAMYPNVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L LD++ +D+     D A+R+   +  SSL+ R+L  +H      P Y +    PL  
Sbjct: 125 IDLQLDDRMVDLVASGIDVALRIAD-LPDSSLLARRLCPVHRWVVGTPSYFERHGTPLRP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +++  L+   +  F     V+  +    R+S     +  + ++    G GIA
Sbjct: 184 RDLASHACLSYNYLMSGEIWHFKDTKGVEESVSINARLSSNNAEALCASLEA---GEGIA 240

Query: 243 LLPDYIV 249
           L PD+I 
Sbjct: 241 LQPDFIA 247


>gi|115360572|ref|YP_777709.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285900|gb|ABI91375.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 301

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 18/302 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++ G+
Sbjct: 4   FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   L      + +   +PSG LR++  +  G + +  ++  FL  YP + +
Sbjct: 64  VYYARAKQLLEALAEADALVADRGDEPSGPLRVSVPVAYGMHRIAPHVGAFLARYPRLDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D+     D AIRL +   S+ ++ R+L T   +  A+P YL     P +  
Sbjct: 124 DLQLTDARVDLVTSRIDVAIRLGEAAPSAEVVARQLGTFRRYVVASPDYLDAHGTPSTPG 183

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240
           EL  H  + F   GD          W     R   +  ++    +++  +++   L G G
Sbjct: 184 ELVDHGCLRFHFGGD-------QQAWSFVDARGATKVLVTGRLKSNHSEVLRAAALDGGG 236

Query: 241 IALLPDYIVKDN---PNLVRIME--DVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLK 293
           IALLPD++V  +     L R+ E  DV+  +    V   Y    + + ++ AF +F+  +
Sbjct: 237 IALLPDWLVDADVRAGRLRRLFEQYDVVPDAARSIVTALYLPNQRGSKRVTAFIDFVEAQ 296

Query: 294 AR 295
           AR
Sbjct: 297 AR 298


>gi|206577520|ref|YP_002240310.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|290509921|ref|ZP_06549291.1| HTH-type transcriptional regulator yafC [Klebsiella sp. 1_1_55]
 gi|206566578|gb|ACI08354.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|289776637|gb|EFD84635.1| HTH-type transcriptional regulator yafC [Klebsiella sp. 1_1_55]
          Length = 301

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 144/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++ +F  V  SGSF+ AAEQL  + S++SR +  LE+++G+ L  R  R L+LT
Sbjct: 1   MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + +L E+   P G LR+     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRMQVVLQEMAAAENDLLETRTTPRGLLRVDAATPVMLHFLMPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIVASPDYVARYGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               +L +H+ + F +  P  +    W ++  D  + E   S +  NS  ++ Q C+ G+
Sbjct: 180 QHPSDLKQHHCLGFTE--PVSLN--TWPVSCCDGQLLEIE-SAVSSNSGETLKQLCLTGN 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY+V     +   V ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMVDKEIASGEFVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|213161746|ref|ZP_03347456.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213585908|ref|ZP_03367734.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213648332|ref|ZP_03378385.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213861326|ref|ZP_03385796.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829414|ref|ZP_06547026.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 303

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|197337872|ref|YP_002157632.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197315124|gb|ACH64573.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 300

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++AR G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LTE G   +
Sbjct: 11  IRSFVLIARLGNFTKAAETLDVSRSHVSRQISSLEKQMGVTLLIRTTRTLRLTEAGKHFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
               +  H ++   +   +   K  G+++I      LG+  L   +  F+  YPD+ I L
Sbjct: 71  HQCEQALHTIDQALLSAVDDVEKVQGEIKINCVGGYLGEVFLADIVNAFMQQYPDVSISL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+   ++ S  + +KL+ I M   A+P YL+    P   +EL
Sbjct: 131 DFSSNRVDLIEEEFDIAFRM-GSLEDSGFVAKKLLDIEMGTLASPKYLQQYGRPSHPKEL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +T        +  +++ + V++   +  I   LQ  +   ++   + G+GI  +P
Sbjct: 190 QQHHCLT------GSVRKWHFQSLVNKEHYDVSIKGNLQCKNGRVLVAGAIAGNGIIRVP 243

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               +   D+  LV++ E+   P+      Y        +++ F +F+
Sbjct: 244 LIYCQQELDDKKLVQVFEEWGIPTVDFSAIYHRDRYQPKRIRTFIDFV 291


>gi|158337296|ref|YP_001518471.1| LysR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158307537|gb|ABW29154.1| transcriptional regulator, LysR family [Acaryochloris marina
           MBIC11017]
          Length = 302

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 147/306 (48%), Gaps = 34/306 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L++F  V R GSF  AA   ++  SS+SR I+GLE E+ ++L  R  R L+LTE 
Sbjct: 1   MDISVLKLFVDVVRQGSFAGAARDRNIDPSSVSRAIAGLEKELDLRLLQRTTRQLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSV-------KPSGKLRIATTIDLGQNLLQGNLKEF 115
           G          + ++E    ELQ++S        +P G+LR+  +   G   +   L +F
Sbjct: 61  GKTY-------FERIEPLIEELQQASEIAADVVGQPKGQLRVTVSASFGLKCIVPLLPQF 113

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
             LYPD+ + L+  +   D+ ++  D AIRL   ++ S+LI ++L+       A+P YLK
Sbjct: 114 EQLYPDLTVNLLFSDAVEDLLLNRIDVAIRLGL-LRDSTLIAQQLMQTRYRVCASPDYLK 172

Query: 176 NCREPLSIQE-LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQ 233
               P+++ E +  HN + F    P       WL       + E  I    V S    +Q
Sbjct: 173 QS-PPIAVPEDIADHNCLRF----PLAGFQSQWLFKDAQGTLTEVPIHGNTVISNGIALQ 227

Query: 234 YCVLGS-GIALLPDYIVKDNPNLVRIMEDVITPSFTV---------YFCYPEALKNTGKL 283
            CV+ + G+ALLP++++ ++     +++  + P++ V         +F YP       KL
Sbjct: 228 QCVIANMGLALLPNWLINEDLRTGTLVD--VLPAYEVTGTDFSTAAWFVYPSRCYVPLKL 285

Query: 284 KAFRNF 289
           + F  F
Sbjct: 286 RVFIEF 291


>gi|307293155|ref|ZP_07573001.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306881221|gb|EFN12437.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 292

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 142/297 (47%), Gaps = 24/297 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDWD LRVF  VAR+     AA  L +  ++I+R+++ LE  +G +LF   A   TLT  
Sbjct: 2   FDWDDLRVFLAVARTRKIAPAARALGIDATTIARRLARLERTLGPELFEMGAGERTLTAH 61

Query: 63  GSK-LHRVTSEVYHKLETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLL 117
           G   LH   S     +E+  +   E +       SG++R++     G  +L   L +F  
Sbjct: 62  GQVLLHHAES-----IESAALAAMEEATGREHHLSGQVRLSVAEGFGTWVLAPGLADFSR 116

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P I++ LI  +  ++ S   AD A+ L +P Q   L  R++    +H YA+P YL   
Sbjct: 117 RHPGIRLDLITASGFLNPSKREADMAVMLARP-QRGRLSVRRMGDYRLHLYASPAYLAQA 175

Query: 178 REPLSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
             P S   L  H L+ +   +P+ +   + ++L  V+  + E  +    +N     MQ+ 
Sbjct: 176 GAPGSTAALRGHVLVGY---VPEFIFSPELDYLDEVEAGL-EASLRATSIN-----MQHR 226

Query: 236 VL--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  G+GI +LPD+I   +  LV +M D +    + +      LK   ++ A   ++
Sbjct: 227 MIAEGAGIGVLPDFIAGRDSALVPVMADRVEIMRSFWLVTHGDLKKLPRIAAVAQWL 283


>gi|187922312|ref|YP_001893954.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713506|gb|ACD14730.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 367

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G    
Sbjct: 7   MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP +   + 
Sbjct: 67  ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P   + L 
Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPTRPEHLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  ++         E +        P GE R+   + +  N+   + Q+ +LG GIA+L
Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|15964478|ref|NP_384831.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307308421|ref|ZP_07588125.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307318984|ref|ZP_07598415.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15073655|emb|CAC45297.1| Probable HTH-type transcriptional regulator, LysR family
           [Sinorhizobium meliloti 1021]
 gi|306895398|gb|EFN26153.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306901024|gb|EFN31632.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 293

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 9/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +RVF  VAR+G    A+++L ++ +++SR+++ LE E+  KL  R   G  LT +
Sbjct: 1   MNWDDVRVFLAVARTGQILAASKRLGINHATLSRRVTALEEELKAKLLIRRPNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q ++       +G +RI      G + L   L      YP++
Sbjct: 61  GEVFFAAAERMETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLTARYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL+   +   +S   AD AI + +P Q   L+  KL    +  YA+  YL     P +
Sbjct: 121 KLQLVPVPRSFSLSQREADIAITIERPEQ-GRLVSSKLTDYTLGLYASAEYLGRYGTPGT 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +L  H  I +  DLI       N+   V R       +  +++S +   +     +GI
Sbjct: 180 VDDLKNHRRIGYVEDLI--FTPSLNFSTEVMRSWD----ASFEISSAMGQTEAVRSSAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +L +YI +  P LVR++ D  T     +  Y E+ ++  +++    F+
Sbjct: 234 GILHNYIARQYPELVRLLPDR-TIRRAYWTTYHESARDLVRVRTVAAFL 281


>gi|296116043|ref|ZP_06834663.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977397|gb|EFG84155.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 301

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 143/304 (47%), Gaps = 24/304 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F ++A +GS    A  + +S +++SR++SG E  +G +L  R +R   LT +G +LH
Sbjct: 8   LKFFCILAAAGSIAGCARVMGMSPAAMSRRLSGFEARLGTRLVTRTSRHFALTAEGQRLH 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + + H++E  + E+   +  P G LR+    +LG+ +L G +  F+  YPD+ + L 
Sbjct: 68  ERATRIMHEIEEAEAEVTAKAGIPHGVLRVGVPSELGRKMLAGIVAAFVEKYPDVTVHLT 127

Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L +  +D+  D  D AIR   P    + +++LI  + V       A+P Y      P + 
Sbjct: 128 LSDAGLDVIDDGLDIAIRAGMPPDQDVMTTTLISSRRVVC-----ASPAYSVRKGLPATP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLG 238
            +L KH+ I     + +    FN  A  D   G+ R        L  +S   +  + V G
Sbjct: 183 HDLLKHDCIC----LLRRQRIFNEWAYYD---GKTRKEIHVTPHLAASSSEVVHDWAVSG 235

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT-VYFC--YPEALKNTGKLKAFRNFIFLKAR 295
            GIAL   + + D+    R++E +   ++  V  C  YP       +++ F +F+    R
Sbjct: 236 QGIALKVLWDIADDLKCGRLIECLSAYAWEDVVLCAIYPSRTHLPPRVRFFLDFVKRALR 295

Query: 296 DWKF 299
              F
Sbjct: 296 QHDF 299


>gi|288550300|ref|ZP_05969910.2| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315708|gb|EFC54646.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 297

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 133/288 (46%), Gaps = 8/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT AA+ L+L  +++S+ +  LE  +G++L +R  R +  T +G   +
Sbjct: 3   MRAFTRVVETGNFTRAADSLNLPNATLSKLVKSLEAHLGVRLLHRTTRRVVATPEGQDYY 62

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S V   +E           +P G LRI       + +L   L +FL  YP+I+I L 
Sbjct: 63  EKASRVLIDIEEIDTSFSALQSRPKGYLRIDVGGSTAREVLIPALPDFLQRYPEIRIDLG 122

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           + ++ +D+     DC IR    +  SSLI R +    M   A P YLK    P    EL 
Sbjct: 123 VSDRPVDLISGNVDCVIR-GGTLDDSSLIARHIGDAPMVTCATPGYLKAAGVPAYPDELR 181

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
           + H L+++  L P     F +   V+  + E +    + +N   + +   + G GI    
Sbjct: 182 NGHKLVSY--LSPLTGRAFPFRFIVEGEMRELKTQHHIGINESNAHLAAAMAGMGIIQTF 239

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y  KD   N  LV I++     S+  Y  YP+    T +L+ F ++I
Sbjct: 240 YYAAKDELNNGTLVEILQAWRPASYPFYVVYPQNRHMTHRLRVFIDWI 287


>gi|197262558|ref|ZP_03162632.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197240813|gb|EDY23433.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 303

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 144/294 (48%), Gaps = 19/294 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239
            E          + +P  +    W  T +      +   +   + V+S  S+M + + GS
Sbjct: 180 LESLAQAEWIIHERLPTPLR---WTVTSNHGQHSRLEISKAGKISVDSARSLMAFALAGS 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 237 GVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|330960843|gb|EGH61103.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 301

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 135/295 (45%), Gaps = 14/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+
Sbjct: 4   FQAMRVYVKVVEAGSLTGAAQACSISTTMVGNHLRSLEQRLGVSLLQRTTRRQRLTEFGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   EV   +  ++   +++   P+G LR+   +  G  LL   L EF   +P++++
Sbjct: 64  AYYQRCLEVLGLVAQSEQLAEQAQGDPTGTLRMTAPLTFGSELLAPALVEFSRRFPEVKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L N+ +D+  +  D AIRL    QSS LI R L    +   AAP YL +   P+  +
Sbjct: 124 DLVLTNQRLDMIDNGFDVAIRLGNIAQSSPLIARPLQDYTLTICAAPDYLAHHGAPVRPE 183

Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           +L  HN + F    P   E       W  T   P GE  +     +  N+   + Q    
Sbjct: 184 DLRSHNCLAFA--YPAGDEWRTAGTQWRMT--GPEGEVLVDIDGSMVANTSAGLYQAARA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     LV ++     P   +   Y +      KL++F  F
Sbjct: 240 GLGVVMLPDALVQRDLQEGRLVALLPGYHLPRRPMNLLYVQDRYRLPKLRSFVEF 294


>gi|264679397|ref|YP_003279304.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262209910|gb|ACY34008.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 300

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 145/297 (48%), Gaps = 18/297 (6%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR+   F  VA + +F+ AA+ LHL+  ++S QIS LE+ +G++LF+R  R + LTE 
Sbjct: 2   DRLRLITTFMNVAEAENFSRAAQSLHLTPQAVSLQISQLESWLGVRLFHRSTRRMALTED 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         ++  + EL++ +   +G +++A+++ LGQ L+   L +F   YPDI
Sbjct: 62  GRVFYERCRVGLQSIDQGERELRDRASGITGSIKVASSLSLGQLLVAPLLAQFNESYPDI 121

Query: 123 QIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I+L+  N     +D+ MD          P+ + SL+ R++        AAP YL     
Sbjct: 122 RIELVTQNPWPDTVDLGMDIGVIG----GPLLNVSLVARRVGRFTHMLCAAPAYLAAKGT 177

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           P S QEL +H  I  G   P+    + W   +T  + + EP  S +  +  +   Q  + 
Sbjct: 178 PKSPQELLQHCCI--GLRHPRTNRIWPWTFQSTRRQTMLEPPFSFITQDPAVQ-RQLVLQ 234

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+GI  L DY       +  LV +      P   V+   P+      ++K   +F++
Sbjct: 235 GAGIGQLTDYFAGPLIASGALVELPLGYSGPRLDVHVFIPQREHTPRRIKLLNDFLY 291


>gi|329295686|ref|ZP_08253022.1| LysR family transcriptional regulator [Plautia stali symbiont]
          Length = 299

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 22/279 (7%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V   GSF  AA +L  S    S+ +S LE ++G++LF R  R L+ TE G   + 
Sbjct: 8   RMFVAVLEVGSFAGAAARLGTSSGQASKLVSRLEQQLGVQLFKRSTRALSPTEIGRAYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +     +QE++  P+G+L+I+     G  +L   L  F   YP I++ +  
Sbjct: 68  RVKTLLETFDALDATVQENARSPTGRLKISAPGTFGTAVLASVLVAFARHYPLIELDVNF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ++I  +  D AI + K +  SSLI R+L  + +   AAP YL     P   ++L  
Sbjct: 128 SDRAVNIVDEGFDMAISIGK-LDDSSLIARRLGEVPIRLAAAPGYLLQHGTPQHWRDLAT 186

Query: 189 HNLITFGDLIPKCMEDFN----WLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240
           H          +C+ D N    W      P G+    P    L  ++  + +Q  + G G
Sbjct: 187 H----------QCISDTNFRDPWHWPFVTPFGDSVSMPIRGRLCFSNTEACLQAALAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEA 276
           IA LP +I         +V ++ED   P+  ++  YP A
Sbjct: 237 IARLPGFIAAPALQRGEIVTLLEDFAPPAMGLFALYPPA 275


>gi|295676303|ref|YP_003604827.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436146|gb|ADG15316.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 302

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 11/292 (3%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V   GSF  AA+ L  S ++++R ++ LE  +G +L  R +R L+LTE 
Sbjct: 2   DRLRAFEVFVTVVNRGSFARAADALETSPANVTRYVNDLEAHLGARLLNRTSRRLSLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   +  T+  +  +S++P G+LRI   +  G   L      F+  YPD+
Sbjct: 62  GETLYSRCKAILEDVAETEGLVSTTSIEPRGRLRINAPVSFGIQHLAPLWPRFMQQYPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +DI  +  D AIR+ +   +     RKL T      A+P YLK    P +
Sbjct: 122 ELDITLIDRVVDIVEEGFDLAIRISR-AGTVDHAARKLATSTNILCASPDYLKRWGHPET 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +L  H  I +         D   L   D       +SC +  N+  +     + G G+
Sbjct: 181 PLDLLGHQCIGY---TYAATADLWQLIDKDGKTHAVEVSCQMHTNNGDTARAAALAGHGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P +++ ++     L+R++ D   P   V   YP     + K++A  +F+
Sbjct: 238 IWQPTFLIGEDLRAGRLLRVLPDYRLPDIDVLALYPSRRHVSAKVRAAIDFL 289


>gi|119773717|ref|YP_926457.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119766217|gb|ABL98787.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 303

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 142/298 (47%), Gaps = 18/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V RS  F+ AA  + + +S+ISR+++ LE E+G++L  R +R L+LT+ G
Sbjct: 3   DLNGMALFAAVVRSQGFSQAARDIGMPKSTISRKVAQLEEELGVRLLQRDSRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + ++LE  +  ++ +    SG LRIA  +   Q L+      FL LYP ++
Sbjct: 63  TLFYQHCETIVNELEAAKAVIEHTHADVSGSLRIAIPVSFSQELIANLCSGFLRLYPSVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+Q S  + R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDSDVGLVGEGYDIAIKY-GPLQPSDNVARLLFERQPILVASPGYLKKHGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +EL +H  I  G      + P        + + +R +        +VNS + + Q  +  
Sbjct: 182 KELGQHAGILLGTTRSAPIWPLGKGGRKTMVSFNRKV--------RVNSAVMVRQLALDD 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA+L     K +    +L+ I+ +     F VY  Y    +    +  F +F F+K
Sbjct: 234 FGIAMLSHAQCKKDLASGSLLPILPEWPMEPFKVYGVYSSRKQLATNISVFLDF-FIK 290


>gi|307297154|ref|ZP_07576967.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306877378|gb|EFN08609.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 298

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 129/276 (46%), Gaps = 16/276 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA + SFT AA  L +S + +SR +  LE  +  +LFYR  R + LT+ G 
Sbjct: 4   WEGLDEFMAVAAASSFTGAARSLSVSTTHVSRAVMALEQRINAQLFYRTTRTVRLTDTGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +     + E   +P+G+LR+  +  +G+  +   ++ F + +P + +
Sbjct: 64  VFLEQCRRIAAETDEAIAHIAEQG-EPAGELRVTCSTAMGERYVAPLIRRFAMHHPRLSV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIR    I    LI+ ++ +  ++  AAP YL     P +++
Sbjct: 123 SIELTNRVVDLMTEDFDLAIRT-GTISDPRLIKTRIASRRLYTCAAPDYLARAGRPTTVE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E+  H  I  G          + +    RP G  R  C   NS  +++  CV G GI  L
Sbjct: 182 EIGAHECI--GGTSGSWHFKVDGVEVAHRPSG--RFRC---NSGHAVVDACVAGLGICQL 234

Query: 245 PDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPE 275
           P++ V   P+L       I+ED       ++  YP+
Sbjct: 235 PEFYVL--PHLQHGMVELILEDCRPDDEPIWAVYPQ 268


>gi|170750184|ref|YP_001756444.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656706|gb|ACB25761.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 302

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 131/288 (45%), Gaps = 9/288 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD LR F  VAR+G+ + A  +     +++ R+I  LE  +G +LF+R   G  LTE G
Sbjct: 7   NWDDLRFFLAVARTGTLSAAGARTGTEHTTVGRRIRALEEGLGARLFHRSNLGYALTEDG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L  V +E       +     E++   SG +RI      G   L   +      +P ++
Sbjct: 67  ANLLGV-AEAMESAFLSASAATEAAQTVSGTVRIGAPDGFGSVFLAPRMHRLTARHPGLE 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++   +   +S   AD  I L  P Q + ++ R+L    +  YAA  YL        +
Sbjct: 126 VEIMATARIFSLSKREADIVISLSGP-QQARVVARRLTDYRLLVYAAETYLAGAAPIAEV 184

Query: 184 QELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  + +  D++     + N+L      +G P  + L+  + L+ +   + G+G+ 
Sbjct: 185 GDLSGHPFVGYIEDML--FTRELNYLGA----LGPPVSARLRSTNLLAQVHATLGGAGLC 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP +I   +P LV ++   +  + + +    E  +    ++A   FI
Sbjct: 239 VLPAFIAAAHPGLVPVLPGAVALTRSFHMHIHEDHRKAAHIRAVAGFI 286


>gi|209547992|ref|YP_002279909.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533748|gb|ACI53683.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 293

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 139/291 (47%), Gaps = 13/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P +
Sbjct: 61  GEVFLASAERMETEMLAAQASLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P Q   L+  KL    +  YA+  YL +   P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYTLGLYASRDYLASRGTPSD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239
           I+ L  H  I +       +ED  + A+++   GE   S     ++++ +   +    G+
Sbjct: 180 IEALKAHPRIGY-------VEDLIFTASLNFS-GEVMRSWDASFEISTAIGQTEAVRSGA 231

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +L DYI +  P L RI+ D I+     +  Y E  ++  ++++  +F+
Sbjct: 232 GICILHDYIARQYPELQRILPD-ISIRRAYWTTYHETARDLVRVRSVVDFL 281


>gi|148653255|ref|YP_001280348.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148572339|gb|ABQ94398.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1]
          Length = 301

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 135/272 (49%), Gaps = 9/272 (3%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D LR   VF  V   GSF+ AA QL ++ S++S+QI  LE ++G+ L +R  R L+LTE 
Sbjct: 4   DNLRGMAVFASVVGHGSFSGAARQLGITTSAVSQQIRSLEKDLGVVLLHRSTRKLSLTEA 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  +    +V    +  +I++ +   + +G LRIATT +LG N +   L  ++  + D+
Sbjct: 64  GASFYESAKDVVTAADQGRIKVNQLRDELAGSLRIATTPELGVNHILPALSTWMSAHDDL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  + DN  ID+  + AD AIR+   I+ SS+    L  +     A+PHYL+   +   
Sbjct: 124 SIYFLADNHYIDMIDERADIAIRMSPQIKDSSVATYPLAEVKQMLVASPHYLRQHEKITK 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
            ++L  H LI+   +      DF+ + T  +     +I+  +Q N+          G G+
Sbjct: 184 PKDLANHQLISIDLMKDPNTLDFSSIETGKK--NRVKITSRIQTNNVFLATTLAKEGHGL 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVY 270
             +    V+    +  LV ++ +   P F +Y
Sbjct: 242 VRVMSLDVQKELASGELVEVIPEYSLPHFVLY 273


>gi|70730132|ref|YP_259871.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344431|gb|AAY92037.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 302

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 138/285 (48%), Gaps = 12/285 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA  GSF  AAE+L+L+ S++S+ I+ LE  +  +LF R  R L LT+ G+  +R 
Sbjct: 12  VFVCVADCGSFKAAAERLNLTASAVSKAIARLEGRLQARLFQRTTRSLALTDAGTAFYRT 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S V   LE  ++ L   + +  G++RI      G++ + G +  F   +P +Q  +   
Sbjct: 72  CSGVLADLEEAELALNAENSELRGRVRIDLPGTFGRSQVLGAVLRFAREHPGLQPHITFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDK 188
           +  ++     AD A+RL    Q  + +  + +    H + A+P YL++   PL+ Q+L++
Sbjct: 132 DPGVEPLEAGADIAVRLGGSGQWPAALGHRCLGREWHLFCASPDYLRSHGVPLTDQDLER 191

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIALL 244
           H  I +G +  +      W     RP    R     SC+ V     ++     G GIA L
Sbjct: 192 HQCIAYGWVDGRVSP---WNFASGRPGESERRVMSASCV-VGDGEGLLMAVQQGYGIAQL 247

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P ++VK   ++ +LV ++    +    ++  + ++ +   K+ A 
Sbjct: 248 PSWLVKRQLEDGSLVEVLPQWASEGQAIHLLWLKSRQGLPKVSAL 292


>gi|330504498|ref|YP_004381367.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918784|gb|AEB59615.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 302

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 141/292 (48%), Gaps = 5/292 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GSF  AA+ L L  S+++  I  LE  + ++L  R  R ++LT +G+   
Sbjct: 7   MQVFVRVAEVGSFIKAAQTLALPASTVTSSIKNLEKYLQVRLLNRTTRRVSLTHEGACYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E T+  L +S+ +P G+LR+     +   ++  NL++F   YP+I + + 
Sbjct: 67  AQCREILTLIEHTESSLTDSAKRPQGRLRVDMPGGIAHFIVMPNLQDFYRRYPEIYLMIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D+  +  DC IR  + +  S+LI R L        A+  YL+    P   ++L 
Sbjct: 127 VNDRQVDLVQEGVDCVIRTGE-LNDSTLIARPLGHFRWVTCASKAYLRENGTPQVPEDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I +     + + D ++ A     +  P      VN     ++ C+ G G+A L + 
Sbjct: 186 HHRAIHYFSGRTRRVGDMHF-ARGSEKLSVPVKGTAAVNETGLYIKMCLEGFGLAQLAER 244

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IV +   +  LV ++ D   PS  V   YP     +  ++ F +++ +  RD
Sbjct: 245 IVSEHLQDGRLVEVLPDWQPPSVPVNLLYPHQRFLSPAVRVFADWVSMLIRD 296


>gi|295676622|ref|YP_003605146.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436465|gb|ADG15635.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 317

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 134/293 (45%), Gaps = 18/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R + LT+ G +  
Sbjct: 13  IELFCLAAELGSFTLAANAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDAGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   + E+      P+G LRI+     G   +   L  F   YP ++++  
Sbjct: 73  EQCRQALSQLMDAEREVTGEQTTPAGVLRISMPTPYGHYRVLPLLPAFRKRYPQVRVETH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID + +  D AIR R P   S+L+ RKL    M   A P YLK    P +I++L 
Sbjct: 133 LSNRNIDFADEGFDLAIRGRAPA-DSNLVARKLEDAEMVVVATPAYLKRAGVPKTIEDLQ 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSY------LSIMQYCVLGSG 240
            H  I F   +P       W  T +   G P     L   SY      L+ +     G+G
Sbjct: 192 AHECIQFE--MPSSGRHLAW--TFE---GSPENADVLTRGSYGTSGDALAGVTLARAGAG 244

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     ++V D+     LV ++ +    +      YP A   T +++AF  F+
Sbjct: 245 LFQTYRFVVADDLREGRLVEVLREAGGRTRPFILLYPHARYLTSRVRAFVEFL 297


>gi|298293129|ref|YP_003695068.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929640|gb|ADH90449.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 299

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 131/255 (51%), Gaps = 20/255 (7%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG----SKLHRVTSEV 73
           GSF+ A  +L LS S++S+ ++ LE  +G +L  R  R + LT +G    ++  R+  E+
Sbjct: 18  GSFSAAGRRLGLSPSAVSKLVTRLEERLGTRLLVRSTRAIMLTAEGEAYVARARRILGEI 77

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
               E  +     ++  P G+LR+++T+  G+  +   + EFL LYP++Q+ L L ++ I
Sbjct: 78  D---EAERFIAAGAAAAPRGRLRVSSTVGFGERCVVPRVPEFLALYPEVQLDLSLTDEVI 134

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+  + AD  +R   P++ SSL  RK++       A+P YL     P + Q+L  HN + 
Sbjct: 135 DLVAERADIGLRA-GPMRDSSLKARKMLESRRVIVASPAYLARHGRPHTPQDLAGHNCLR 193

Query: 194 FGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           F     +  +D+ +   VD   GE    P    L+ NS   + +  + G GIA +  Y+ 
Sbjct: 194 FN--FRRSQDDWPF---VDPASGEGYALPVSGNLEGNSGSMVQRLALDGLGIARIARYVA 248

Query: 250 KDN---PNLVRIMED 261
           + +     LV ++E+
Sbjct: 249 ERDIGAGTLVEVLEE 263


>gi|229589145|ref|YP_002871264.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361011|emb|CAY47873.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 301

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + V+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R  +LTE G 
Sbjct: 4   FQAMSVYVKVVEAGSMTAAAQACGMSTTMVGNHLRALEQRLGVSLLKRTTRKQSLTEFGG 63

Query: 65  KLHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + ++   EV   + ++ Q+  Q  S  P G LRI      G   L   L EF   YP I 
Sbjct: 64  QYYQRCLEVLGLVADSEQLAEQAHSDIPKGTLRITAPPVFGTERLTPALSEFSRRYPQIN 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++L N+ +D+     D AIRL + +++SSLI R +    +   A+P YL     P S 
Sbjct: 124 LYVVLSNERMDLVDSGFDVAIRLGE-LETSSLIARPMQDYTLTLCASPAYLARRGTPSSP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSG 240
            EL +H+ + F         D   L  +    GE   P    L +NS   + Q  V G G
Sbjct: 183 AELQQHDCLAFAYPANDNWRDTEKLWRMTGDGGELEVPVSGSLTINSSQGLRQAAVNGMG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I +L D +V+   ++  LV ++     PS  ++  Y +      KL+AF +F   K
Sbjct: 243 IIMLADALVQPDLESGKLVALLTTYKLPSRPMHLLYGQDRYRLPKLRAFVDFAMEK 298


>gi|206561026|ref|YP_002231791.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198037068|emb|CAR52989.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 300

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 11/298 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD      + V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   I+   S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEDAAIDAGRSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+  Y++  
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGVP-EPSSYRARLLLETRVLTCASAAYVERH 179

Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYC 235
            EP   ++L   H  +   D  P     + W     + +        L VN    ++  C
Sbjct: 180 GEPRHPRDLAHGHRCVLIRD--PVTGRPYEWEFHRGKEVVPFDAGGRLMVNDTGGLLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V G+GIA L +   +D   +  LV ++ +    +F +Y  +  +     K++ F +F+
Sbjct: 238 VGGAGIAQLLELYARDIVADGKLVLLLPEWTDETFPLYAYHHASNLVAAKVRVFLDFV 295


>gi|52425450|ref|YP_088587.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307502|gb|AAU38002.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 298

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 136/295 (46%), Gaps = 14/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + LR F VVAR+GSFT A  Q+ +SQS++S  I G+E  + IKLF+R  R ++ T
Sbjct: 1   MKENLNDLRAFLVVARTGSFTKAGAQMGVSQSALSHSIRGIEERLNIKLFHRTTRSISTT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L++  S ++  ++    EL E     +G LRI          L      F   YP
Sbjct: 61  EAGEQLYQRLSPLFDDIDNELNELSEFRNAVTGTLRINGNEHAFYYALGDKFVRFSQKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L+ +N+ IDI  +  D  IRL   +    +  R    + M   A+P YL N   P
Sbjct: 121 EVNLELVAENRFIDIVAERFDAGIRLGSDVAKDMIAVRLTDKLPMCCVASPEYLANYGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQY 234
            +  +L +H  +         M   NW   +D P  + RI  +Q    +S      +  Y
Sbjct: 181 KTPYDLTEHQCLLHRLSNGGVM---NW-EFID-PKSKGRILKVQPQGTISANGGRVLENY 235

Query: 235 CVLGSGIALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              G GI   P D + +D  +  L+RI++         +  YP   +N+   KA 
Sbjct: 236 ARSGLGILWCPLDMVEEDIRSGKLIRILQQWDMDYDGYHLYYPNRRQNSPLFKAL 290


>gi|332283398|ref|YP_004415309.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330427351|gb|AEC18685.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 339

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 126/246 (51%), Gaps = 4/246 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  V  + SFT AA+ L L +S+++  I  LE  + ++L  R  R L+LT  G+
Sbjct: 4   FQAMQVFTRVVDANSFTLAADSLGLPRSTVTTTIQSLERSLKLRLLNRTTRRLSLTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   +E      ++ +  PSG+LRI T   +G+ +L   L +F   YPDI++
Sbjct: 64  AYYERCVQILADIEDMDASFRDVTRGPSGRLRIDTPPSIGRLILVPALCDFHTRYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  D  DCAIR+   ++ SS++ R++ T      AAP YL+   EP SI+
Sbjct: 124 AIGMGDRIVDMVRDAVDCAIRVGD-LEDSSMVARRIGTFESITCAAPSYLEQHGEPKSIE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ + +     +     +W   VD      ++   + VN   + +Q  V G G+  
Sbjct: 183 DLANHHAVHY--FSARTGRVIDWSFMVDGKSQNVQVKGSVSVNDAEAYVQCGVSGFGLIQ 240

Query: 244 LPDYIV 249
              Y+V
Sbjct: 241 PSRYMV 246


>gi|91781426|ref|YP_556632.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91685380|gb|ABE28580.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 367

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G    
Sbjct: 7   MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP +   + 
Sbjct: 67  ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P   + L 
Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPTRPEHLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  ++         E +        P GE R+   + +  N+   + Q+ +LG GIA+L
Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|207858172|ref|YP_002244823.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206709975|emb|CAR34330.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 310

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 144/294 (48%), Gaps = 19/294 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 13  RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 73  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDLRIRH 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 133 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239
            E          + +P  +    W  T +      +   +   + V+S  S+M + + GS
Sbjct: 187 LESLAQAEWIIHERLPTPLR---WSVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGS 243

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   T K++AF +F+
Sbjct: 244 GVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVTTKVRAFIDFL 297


>gi|186473422|ref|YP_001860764.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195754|gb|ACC73718.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 305

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 139/290 (47%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S +++SR ++ LE  +G +LF R +R L LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARAMGVSVATVSRGVARLEERLGARLFNRTSRQLALTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    +++Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  HTIAEKAADIYRQAEAAENAAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +DI     D A+R+   +  SSL+ R+L  +     A+P +L+    P   
Sbjct: 126 IDLHLSDATVDIVAQGFDAALRIAA-LPDSSLVARRLCPVSQLVVASPEHLERYGRPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L     +++       +  F   A  + P+    +  L+V +  +++   + G  IA 
Sbjct: 185 RDLVGRPCLSYAYRARSDVWRFVNDAGDEEPVTP--VGPLRVTNSDALLPALLDGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++ 
Sbjct: 243 LPEFIAGEYLADGRLEAILTDWHLTRGGLYFVTPSARARPAKVTALADYF 292


>gi|83644495|ref|YP_432930.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632538|gb|ABC28505.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 297

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 107/192 (55%), Gaps = 3/192 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L+ F      GSF+ A + L LS SS+SRQI  LET++  KLF R  R L L+++G  
Sbjct: 3   DELKTFIKCCECGSFSAAGKTLLLSPSSVSRQIDSLETKLQTKLFQRTTRQLILSDEGRF 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     ++  +L+ T   L++   +P G+LRI+     G+  +   L +FL LYP + + 
Sbjct: 63  LLERAEDILARLDDTVASLRQLHGEPEGRLRISVLETYGRLHISPLLPKFLALYPKVSVD 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+  D  D AIR+  P + S L  +KL    M   A+P Y+ +   P + ++
Sbjct: 123 IELENQMVDLYRDAVDIAIRIGPP-EDSRLKAKKLTDGRMLLCASPDYVASFGPPQAPED 181

Query: 186 LDKHN--LITFG 195
           L +HN  LI+ G
Sbjct: 182 LARHNCLLISRG 193


>gi|77457661|ref|YP_347166.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381664|gb|ABA73177.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 301

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 131/291 (45%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F V      F  AA  + + +S +S+QI  LE  +G++L  R  R L LTE G++  
Sbjct: 7   MRAFVVTVGENGFAAAARAMDVPRSKVSKQIQALEEAIGVQLLQRTTRSLHLTEAGAEYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV   L+  +   ++   +  G LR+   +  G   L   +  F   +P+I++QL+
Sbjct: 67  EAAREVIAALDEAEQRARDGVGELRGVLRVNAPMSFGLRRLGKLIPLFHEQHPNIELQLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D      D  IR+   +  S++I R+L        A+P YL+    P + Q+L 
Sbjct: 127 LSDQQVDPVRGGFDVTIRIAS-LPDSTMIARQLAPAPRIMVASPAYLERAGTPQTPQDLR 185

Query: 188 KHNLITFGDL-----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H  + +G L     +  C         V  P        L  N+   + Q    G GIA
Sbjct: 186 SHQCLNYGYLQSGVSLQLCNGKETQRVNVTGP--------LHANNGDLLAQAAEAGMGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLPD+IV++      LV ++ +   P+ T+   Y  A +   K +AF  F+
Sbjct: 238 LLPDFIVEEALAAGRLVPVLCEWQAPAITINAVYSSARRVPQKTRAFIAFL 288


>gi|86135897|ref|ZP_01054476.1| putative transcription regulator protein [Roseobacter sp. MED193]
 gi|85826771|gb|EAQ46967.1| putative transcription regulator protein [Roseobacter sp. MED193]
          Length = 302

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 126/284 (44%), Gaps = 7/284 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  VA   SFT  A Q+ +S    S+ ++ LE  +G +LF+R  R +TLT+ G  
Sbjct: 5   DCMRTFVAVAAQHSFTAGARQIGISTKLASKYVARLEERLGAQLFHRTTRSVTLTDTGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V  ++E  +  +QE   + +G +R+      G   L   +  F   +P +QI+
Sbjct: 65  YLERCLPVLDQIEEMEGVIQERQSELAGAIRLTAPTGFGSRELVQAVTPFQQEHPKVQIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L +    I  +  D AIR  K +Q S+L+ RKL  + +   AAP YL+   EP   + 
Sbjct: 125 MLLSDYHAPIVEEGIDLAIRFGK-LQDSTLVARKLCDMRLVVVAAPDYLERFGEPGHPKA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN +    L      D        +    P     + NS  ++    V G GIA  P
Sbjct: 184 LATHNCLL---LQSSAQPDIWRFREEGQVTSVPVSGSFRANSPRAVAHMAVGGQGIARCP 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            YIVK   +   L  +  D       +Y  YP +   T +++A 
Sbjct: 241 YYIVKPLIEQGQLQFLFADREDAPLPLYVVYPPSRHLTARIRAL 284


>gi|293606896|ref|ZP_06689244.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292814748|gb|EFF73881.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 289

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 9/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD  R+F  + R G+   AA  L + Q++  R+++ LE+ +  +LF R   G   T  
Sbjct: 1   MDWDNARIFLAIYRVGTLRGAAALLQIDQATAGRRLAALESSLDARLFLRTPGGYVPTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    +  Q ++Q    + SG +R+A +  +    +   ++     +PDI
Sbjct: 61  GELAFAAAERMEQAADQLQRQMQGLDHRLSGVVRVAASETVASYFVMEAVRRVQAQHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    +  +++   AD AIR  KP  +  LIQR L    +  YA+  YL    EP  
Sbjct: 121 RVVLSASIQISNLTRREADLAIRNLKP-DNPDLIQRHLARKEVGLYASRGYLAAHGEPRP 179

Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                 H L+T+   ++P   + F        P G  RI+ +++NS + I+     G GI
Sbjct: 180 GTAFAGHTLVTYQQAVLPGWSDTF-----CGEPTGNGRIA-IELNSGMMILAAVAAGLGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++  D P+LVRI      P + ++      L  T +++A  + I
Sbjct: 234 GELPTHMAPDYPDLVRIWPGRAEP-YDLWLVMHGDLNRTARVRAVADAI 281


>gi|254501906|ref|ZP_05114057.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222437977|gb|EEE44656.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 309

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 138/301 (45%), Gaps = 14/301 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +RVF  V+R  SF  A++ L ++ +S++R I+ LE ++G +L  R  R + LT  G
Sbjct: 8   DLKPIRVFLEVSRLQSFAAASKTLGMTPASVTRVIARLEQDLGHQLLVRTTRKVALTSVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +      V    +  Q +L+       G+L I   +  G  +L   L+ F L YP+I 
Sbjct: 68  ATVAARYQPVVESFDRIQRDLEREMQPHRGRLSINAPMSFGLRMLPSLLESFKLAYPNID 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++L +  +D+  +  D AIRL +P +  S I RK+  +   A AAP +L+    P + 
Sbjct: 128 LTVMLTDTLVDVVAEECDLAIRLSEPPRDKSTIWRKICEVPRCAIAAPVFLERAGRPETP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             L     +++G       E   W      + R I       L  N+   +      G+G
Sbjct: 188 DTLTPDMCLSYG----SGQEPEAWRFQKGGIKRTILTG--PGLHSNNGDFLYAMARSGAG 241

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           I +LP++IV D   +  + R++ D I PS  +   YP        +  F +F   FL  R
Sbjct: 242 ITVLPEFIVADGLRSGEVERVLPDWILPSLWLSLYYPPYEALPPLVATFTDFFEAFLDDR 301

Query: 296 D 296
           D
Sbjct: 302 D 302


>gi|172064896|ref|YP_001815608.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997138|gb|ACB68055.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 301

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 140/302 (46%), Gaps = 18/302 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++ G+
Sbjct: 4   FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   L      + +   +PSG LR++  +  G + +   +  FL  YP + +
Sbjct: 64  VYYARAKQLLEALAEADALVADRGDEPSGPLRVSVPVAYGMHRIAPQVGAFLARYPRLDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D+     D AIRL +   S+ ++ R+L T   +  A+P YL     P +  
Sbjct: 124 DLQLTDARVDLVTSRIDVAIRLGEAAPSAEVVARQLGTFRRYVVASPDYLDAHGTPSTPG 183

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240
           EL  H  + F   GD       D +    V        ++    +++  +++   L G G
Sbjct: 184 ELVDHGCLRFHFGGDQQAWSFVDAHGATKV-------LVTGRLKSNHSEVLRAAALDGGG 236

Query: 241 IALLPDYIVKDN---PNLVRIME--DVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLK 293
           IALLPD++V  +     L R+ E  DV+  +    V   Y    + + ++ AF +F+  +
Sbjct: 237 IALLPDWLVDADVRAGRLRRLFEQYDVVPDAARSIVTALYLPNQRGSKRVTAFIDFVEAQ 296

Query: 294 AR 295
           AR
Sbjct: 297 AR 298


>gi|116695283|ref|YP_840859.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529782|emb|CAJ96129.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 290

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 132/284 (46%), Gaps = 8/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R G+   AA  L + Q+++ R+++ LE+ VG  LF R + G  LT  
Sbjct: 1   MNWDDARVFLALYRDGTLRAAARSLGVDQATVGRRLTALESVVGATLFLRTSSGYVLTMA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +      +       Q   Q    + +G++RI TT  L  + L   L+   + YP++
Sbjct: 61  GESVLDAAERMEQSANDFQRLTQGLDDRLAGEVRITTTDSLAMDFLMPALEALHVKYPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             Q+    + ++++    D AIR  +P  +  LI R+L    M  +A+P YL+   EP +
Sbjct: 121 VWQIDASTRMLNLAKRETDIAIRTARP-DNPDLIARRLAQWPMGLFASPGYLRVHGEPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+ +   +    E       V  PI   RI    VNS L +      G G+ 
Sbjct: 180 GTAFSGHDLVVYQPYVLGSREPM----LVGEPISGGRIVA-AVNSSLMLRSAIKAGLGVG 234

Query: 243 LLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKA 285
            +P Y+ K + +LVR+  E      + V+    + L++T +++A
Sbjct: 235 EIPVYMGKAD-DLVRLWPERCRDVPYEVWLVTHKDLRHTARIRA 277


>gi|59713236|ref|YP_206011.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59481484|gb|AAW87123.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 300

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++AR G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LTE G   +
Sbjct: 11  IRSFVLIARLGNFTKAAETLDVSRSHVSRQISSLEKQMGVTLLIRTTRTLRLTEAGKHFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
               +  H ++   +   +   K  G+++I      LG+  L   +  F+  YPD+ I L
Sbjct: 71  HQCEQALHTIDQALLSAVDDVEKVQGEIKINCVGGYLGEVFLADIVNTFMQQYPDVSISL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+   ++ S  + +KL+ I M   A+P YL+    P   +EL
Sbjct: 131 DFSSNRVDLIEEEFDIAFRM-GSLEDSGFVAKKLLDIEMGTLASPKYLQQYGRPSHPKEL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +T        +  +++ + V++   +  I   LQ  +   ++   + G+GI  +P
Sbjct: 190 QQHHCLT------GSVRKWHFQSLVNKEHYDVSIKGNLQCKNGRVLVAGAIAGNGIIRVP 243

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               +   D+  LV++ E+   P+      Y        +++ F +F+
Sbjct: 244 LIYCQQELDDKKLVQVFEEWGIPTVDFSAIYHRDRYQPKRIRTFIDFV 291


>gi|37676126|ref|NP_936522.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37200667|dbj|BAC96492.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 307

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 146/293 (49%), Gaps = 7/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  L +F  V   GSF+ AA+QLHL++S++S++I+ LE ++G +L  R  R L+LT
Sbjct: 1   MHSQFSDLPIFVSVVECGSFSSAAKQLHLTKSAVSKRINHLEDKLGSRLLNRTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   ++  +        + E   +P G+L+I   +  G   +   + EFL  YP
Sbjct: 61  EAGERYYEYAAQALNLARQGVDAVTELQGEPRGRLKITAPMTFGVLHVAPLISEFLSRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L L+++ +D+     D  IR+   +  S+LI ++L        A+P Y+     P
Sbjct: 121 KVEVDLQLEDQMVDLVAGRFDLGIRIGH-LPDSNLIAKRLAPCRTVLCASPDYVSRMGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +     +   ++ +L   +     P+ + + VN+  +I +  + G G
Sbjct: 180 SKPADLAQHNCLRYSYF--RGGNEWLFLNQGNEYKVLPKGNFI-VNNSEAIRRALLAGIG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +P +I+     +  LV +M +   P   +Y  +PE      K++ F +F+
Sbjct: 237 IAQMPTFIIGKELRDRKLVNLMPEYQLPQHFLYAVFPERKHMPLKVRMFIDFL 289


>gi|307250442|ref|ZP_07532389.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857571|gb|EFM89680.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 297

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 141/307 (45%), Gaps = 33/307 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           ++VF  VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+ G    
Sbjct: 7   IQVFLTVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66

Query: 65  ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               K+  +TS +     T + EL+       G LRIA+    G   L   ++ FL  +P
Sbjct: 67  EYCKKMTELTSAIEQDFLTQRGELR-------GSLRIASNAAFGSTHLLNAIRTFLAKHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL      
Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLARHGTI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236
            S QEL  H  +   ++  K      W    D   G+  +    S L +N   +++ + +
Sbjct: 179 HSPQELANHRYLAHANVNRK-----EWTFIKD---GQETVLELTSQLTINDTGALLNFTL 230

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--- 290
              GIA+LP Y ++    N  L  ++ D   P++ VY  YP   +    +++F +F+   
Sbjct: 231 ADGGIAMLPKYFIEQQLKNKQLQIVLPDWQMPTYQVYAVYPSRRQLPQTVRSFVDFLVEE 290

Query: 291 FLKARDW 297
           F    DW
Sbjct: 291 FEGKGDW 297


>gi|296161358|ref|ZP_06844165.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295888344|gb|EFG68155.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 367

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G    
Sbjct: 7   MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP +   + 
Sbjct: 67  ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P   + L 
Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPTRPEHLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  ++         E +        P GE R+   + +  N+   + Q+ +LG GIA+L
Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|237653957|ref|YP_002890271.1| LysR family transcriptional regulator [Thauera sp. MZ1T]
 gi|237625204|gb|ACR01894.1| transcriptional regulator, LysR family [Thauera sp. MZ1T]
          Length = 307

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L VF  V   GS T AA++L L +S++SR++S LE ++G +L  R  R L +TE 
Sbjct: 9   IDPNDLLVFARVVAEGSLTAAADKLGLPKSTVSRRLSRLEEQLGERLLLRTTRRLNITEF 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L     ++  ++E      +    +PSG+LR++   D    LL   L  F  L+P +
Sbjct: 69  GAALLDHARQLESEVEAVAALAESRQARPSGRLRVSMPSDFANLLLTDMLAAFAALHPAV 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L  + +D+  +  D AIRL      + L  R+L       YAAP YL    EP +
Sbjct: 129 TLELDLSPRRVDLLGENFDLAIRLGDLPDDALLAARRLAVFPWGLYAAPAYLAEHGEPQA 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +L +H  +    L+ +  +   W  L    R  G P  S +  NS   ++++    +G
Sbjct: 189 PDDLHRHRALR---LLARTGDAIRWTLLCGDQRWEGVPPGS-ITANSPELLIRFACAAAG 244

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +P+Y    +     L R++ D   PS   +  +P       K +AF + +
Sbjct: 245 ITTVPEYFAAPHVQRGELRRVLPDWRPPSIAAWAVFPGRRLMPAKTRAFLDML 297


>gi|149909259|ref|ZP_01897916.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149807783|gb|EDM67729.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 311

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 134/278 (48%), Gaps = 17/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F+ +  +GS   AA  L+L +S+ISR++ GLE E+G+KLF+R  R +TLT  GS 
Sbjct: 4   EDIALFHRIVEAGSLVDAAGLLYLPKSTISRRLQGLEDELGVKLFHRQNRAMTLTTAGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  T  +   LE T  E+ +   + SG LRI         L+   + +F+ L P + ++
Sbjct: 64  FYNKTLSLLASLELTITEITDKDAEVSGHLRILIFPLPNLMLIAHGIYQFMDLNPKLTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQS--SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           LI+  + +D+     D A  + +   +    ++ R +++  +H  A+P YL     P  I
Sbjct: 124 LIVTAEPLDMIRHNIDIAFMVEEAFNNIDIDMVARPVISEILHFVASPEYLYKAGTPRVI 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGS 239
            E+ +HN I +    P   + FN L     P+G     P    + +NS    ++  +   
Sbjct: 184 SEMSQHNSIMYR--FPNG-QVFNEL-----PLGNNEFLPVSGNICLNSIQLALESALASR 235

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA +P+ +  D      LVR+  DV       Y  YP
Sbjct: 236 GIAYIPERLCADEVKQGTLVRLFTDVEPYEGKCYLVYP 273


>gi|116252903|ref|YP_768741.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257551|emb|CAK08648.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 300

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 139/300 (46%), Gaps = 15/300 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 3   DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    +  FL  YP+IQ
Sbjct: 63  RAYYDRCSEPLTHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISSFLKTYPNIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N  +D+  +  D  IR  + ++ SS++ ++L     +  AAP YLK    P   
Sbjct: 123 IDLFVTNLFLDLIAENVDLGIRFGE-LKDSSIVAQRLGKSVRYLVAAPDYLKGRVLPTKP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +    L+     +  W     R      +S  +    + ++  +   G GI 
Sbjct: 182 EDLKDHQCV----LLNGRNGEAEWHLVSGRKSVRLHVSGPVSSRDFDAVSAFTYRGHGIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298
           LLP            LV ++ D  +    V+  YP     T +    R  +F++A + WK
Sbjct: 238 LLPSTYCDQQIRRGELVHLLPDWSSEEIFVHAVYP-----TRRFLPARLQVFVEALKAWK 292


>gi|85712917|ref|ZP_01043958.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
 gi|85693297|gb|EAQ31254.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
          Length = 304

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 142/300 (47%), Gaps = 29/300 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D     +F  V  +GS + AA  L L ++++SR++  LETE G++LF R   G+ LT+ G
Sbjct: 5   DITNYYLFAKVVEAGSISSAARALSLPKATVSRRLQQLETEQGMRLFNRSQSGIRLTDVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   ++    E+ Q   Q    KP G++  +    L Q+LL   L EF+ LYP+I 
Sbjct: 65  EAFLLHCQQLVEAAESAQQVTQRLLEKPRGRVNFSAPYALSQSLLVDVLPEFMTLYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN--CREPL 181
           I L++ N+ I++  +  D A+R+R  I+ SSLI R L    +  +AAP  L+     EP 
Sbjct: 125 INLVVTNRPINLIDEGIDVALRVRPNIEDSSLIARPLSESPLTLFAAPALLEQHPINEPS 184

Query: 182 SIQELDKHNL-ITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
            +  L+  +L  T G         + +L T ++  G       EPR   L  +  + + +
Sbjct: 185 DLLALNHLSLHYTSG--------QYRYLLTHEK--GEQQTIKFEPR---LITDDMIVLRE 231

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +   G+  LP Y+  +   N  LV+++ +   P   ++  YP      G L A R  I
Sbjct: 232 SAIKAQGVTALPTYLCNEAVQNQQLVQVLPEWTLPVGIMHLTYPH---RRGLLPAVRVLI 288


>gi|303253240|ref|ZP_07339389.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248211|ref|ZP_07530239.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307261669|ref|ZP_07543336.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|302647922|gb|EFL78129.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855388|gb|EFM87563.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306868661|gb|EFN00471.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 297

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 141/307 (45%), Gaps = 33/307 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           ++VF  VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+ G    
Sbjct: 7   IQVFLTVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66

Query: 65  ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               K+  +TS +     T Q EL+       G L+IA+    G   L   ++ FL  +P
Sbjct: 67  EYCKKMTELTSAIEQDFLTKQGELR-------GSLKIASNAAFGGTHLLNAIRTFLAKHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL      
Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPTYLAQHGTI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236
            S QEL  H  +   ++  K      W    D   G+  +    S L +N   +++ + +
Sbjct: 179 HSPQELANHRYLAHANVNRK-----EWTFIKD---GQETVLELTSQLTINDTGALLNFTL 230

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--- 290
              GIA+LP Y ++    N  L  ++ D   P++ VY  YP   +    +++F +F+   
Sbjct: 231 ADGGIAMLPKYFIEQQLKNKQLQIVLPDWQMPTYQVYAVYPSRRQLPQTVRSFVDFLVEE 290

Query: 291 FLKARDW 297
           F    DW
Sbjct: 291 FEGKGDW 297


>gi|294146718|ref|YP_003559384.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292677135|dbj|BAI98652.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 311

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 129/281 (45%), Gaps = 24/281 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD +  F  VA +GSFT  A  L +S + +SR I  LE  V   LF+R  R + LT+ G
Sbjct: 3   NWDGIDEFISVATAGSFTRGARALGVSTTHVSRSIMALEQRVQALLFHRTTRTVRLTDTG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     E   K     I L     +P G+LR+  +  +G+  +   ++ F + +P + 
Sbjct: 63  -RVFFERCERIAKDRDEAIALIGERSEPQGELRVTCSTAMGERFVAPIIRRFAMQHPKLA 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L N+ ID+  +  D A+R    +    LI  ++ +  ++  AAP YL +   P S+
Sbjct: 122 VSIELSNRVIDLVGEGFDVAVRT-GTVNDPRLIATRVASRTLYTCAAPSYLASAGRPASV 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVL 237
           + L  H  I              W   VD      RP G  R  C   NS  ++M+ C+ 
Sbjct: 181 EALAGHECIA--------GSASTWHFKVDGQEVIHRPKG--RFRC---NSGHAVMEACIS 227

Query: 238 GSGIALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPE 275
           G GI  LPD+ +       +V  ++EDV      ++  YP+
Sbjct: 228 GLGICQLPDFYILPYLKHGMVELLLEDVQPDDEPIWAVYPQ 268


>gi|206576336|ref|YP_002238278.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288935265|ref|YP_003439324.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290509318|ref|ZP_06548689.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206565394|gb|ACI07170.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288889974|gb|ADC58292.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289778712|gb|EFD86709.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 295

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 7/267 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F VVAR  SFT AA QL +SQS++S  +  LE  + ++L  R  R +  TE G +L +  
Sbjct: 12  FMVVARERSFTRAAAQLGVSQSALSHAMRHLEARLDVRLLTRTTRSVVPTEAGERLIQRL 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                ++E     L+++  +P+G LRI         +L   LK F+L YPDI I++ +DN
Sbjct: 72  GPHLEEMERALTALRDTRERPAGNLRITAGEHATSTVLWPALKPFMLQYPDINIEITVDN 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              DI     D  +RL + +    +  R    + M    +P YL+    P +  +L +H 
Sbjct: 132 GLTDIVDGRFDAGVRLGEQVAKEMIAVRIAPDMRMAVVGSPAYLQQAGTPQTPWDLAQHR 191

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV 249
            I     +P     + W    D    + R+   + +NS    +     G G+A +PD  V
Sbjct: 192 CINL--RLPTRGGLYAWEFARDGRDIQVRVEGQVILNSLPQRIDAAEAGLGLAYVPDDCV 249

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCY 273
            +   +  LV+++ D  TP+F  Y  Y
Sbjct: 250 AEALASGRLVQVLAD-WTPTFPGYHLY 275


>gi|167993151|ref|ZP_02574246.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168242652|ref|ZP_02667584.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194450263|ref|YP_002046870.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194408567|gb|ACF68786.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205328753|gb|EDZ15517.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205337955|gb|EDZ24719.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|312913930|dbj|BAJ37904.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225588|gb|EFX50642.1| putative LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 303

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 144/294 (48%), Gaps = 19/294 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239
            E          + +P  +    W  T +      +   +   + V+S  S+M + + GS
Sbjct: 180 LESLAQAEWIIHERLPTPLR---WTVTSNHGQHSRLEISKAGKISVDSARSLMAFALAGS 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 237 GVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|209516663|ref|ZP_03265516.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209502938|gb|EEA02941.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 296

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 10/259 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++  F  AA+   +  S++SR+IS LE  +G++L +R  R + LTE G  
Sbjct: 11  NDMALFVEVVKAKGFRSAADATGVPNSTLSRRISELERSIGLRLLHRTTRKIELTEAGQI 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      +L +   +PSG LR +  +D     L   + EF  LYP I   
Sbjct: 71  YFERCKRIVDEARLAHEQLGDMLAQPSGVLRASLPVDFAVTYLAPLIAEFAALYPGIGFD 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D+  +  D AIR+ +  ++S LI R + T+  H YA+P YL+   EP    +
Sbjct: 131 FDLTPRRVDLVSEPFDVAIRIGES-ENSQLIARTIATLTPHLYASPDYLERSGEPGKPAD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L++H+   FG L        N   T    +G        +NS     +   LG GI L+P
Sbjct: 190 LEQHD--CFGILKAGAWTLLNGTRTETVSVG----GRFTLNSVGMARRLATLGMGIVLVP 243

Query: 246 DYIVKD---NPNLVRIMED 261
           + IV D   +  L RIM +
Sbjct: 244 EEIVADELVSGRLRRIMPE 262


>gi|170700000|ref|ZP_02891026.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135100|gb|EDT03402.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 314

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 14/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + VF  V  +G F  AAE   +S + +   I  LE  +G +L  R  R  +LTE G 
Sbjct: 4   FTSMSVFVRVVETGGFAAAAEVTGISAAMVGNHIRALEAHLGARLLNRTTRQQSLTEVGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  + + +E +    G LR+   +  G   L   L  FL   P++++
Sbjct: 64  TYYGQCVSILSQMELAESDAREMTAVARGVLRVTAPVSFGAQCLTPALSRFLEQAPNVEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +++  +  D AIR+   + +S+LI R+L+   M   AAP YL+    P    
Sbjct: 124 ELTLSDRLVELVNEGFDVAIRIGH-LPASNLIARQLIPYRMVVCAAPAYLERHGTPHDPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L  H  ++FG  + +   ++ +        GE R       L VN   ++    + G+G
Sbjct: 183 DLIHHECLSFG--VHRRTREWRFYEAN----GESRAVQVGGRLTVNHGPALRMAALTGAG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           I + P+ +V D   N +LVR+ E+   P   ++  Y   +    K++ F NF+ 
Sbjct: 237 ILMQPELLVADDLRNGSLVRLFENERMPERPMHLVYQRDINMPLKVRHFVNFVL 290


>gi|21309657|gb|AAL47571.1| transcriptional regulator LysR [Shewanella algae]
          Length = 303

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 142/294 (48%), Gaps = 17/294 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +  L +S+ISR+I+ LE ++G++L  R+ R ++LT+ G
Sbjct: 3   DLNGMLLFAAVVRAEGFSQAARETGLPKSTISRKIAQLEQQLGVRLLQRNTRSISLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP ++
Sbjct: 63  ALFYQHCDSICNEVEAAKATIENTHNDVSGSLRIAIPVSFSQELIANLCSGFMRLYPGVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+Q S L+ R L        A P YLK+   P + 
Sbjct: 123 LDVQFTDADVGLVGEGYDIAIKY-GPLQPSDLVARLLFERQPILVAGPGYLKSKGTPATP 181

Query: 184 QELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++L +H+ I  G      + P        +A+  R          +VNS + + Q  +  
Sbjct: 182 RDLARHDGILLGTSRSAPIWPLGKGSRKTMASFRRRT--------RVNSAIMVKQLALDD 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GIA+L   + K+   +  LV ++++     F VY  Y    +    +  F +F
Sbjct: 234 FGIAMLSHSVCKNELASGALVPLLQEWPIEPFKVYGVYSSRRQLATNISVFLDF 287


>gi|288937015|ref|YP_003441074.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288891724|gb|ADC60042.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 301

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 125/250 (50%), Gaps = 7/250 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++ +F  V  SGSF+ AAEQL  + S++SR +  LE+++G+ L  R  R L+LT
Sbjct: 1   MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + +L E+   P G LR+     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRMQVVLQEMAAAENDLLETRTTPRGLLRVDAATPVMLHFLMPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIVASPDYVARYGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               +L +H+ + F +  P  +    W ++  D  + E   S +  NS  ++ Q C+ G+
Sbjct: 180 QHPSDLKQHHCLGFTE--PVSLN--TWPVSCCDGQLLEIE-SAVSSNSGETLKQLCLTGN 234

Query: 240 GIALLPDYIV 249
           GIA L DY+V
Sbjct: 235 GIACLSDYMV 244


>gi|254462575|ref|ZP_05075991.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           HTCC2083]
 gi|206679164|gb|EDZ43651.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 293

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 12/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AA+ L +  +++ R +  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAADILGVHHATVIRHVDALEARLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       ++    + SG+L + T+++    L+   L  F   YPDI 
Sbjct: 63  EDLCRVAQATDEQFSQLAGRVKGKGEEVSGEL-VVTSLNGLAPLMSPTLSAFQERYPDIT 121

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +   +   +    A  AIR    P Q  +++Q K V+  +  YAA  Y+     P S
Sbjct: 122 VRYLTGERLFRLEYGEAHVAIRAGAAPDQPDNVVQ-KFVSQSVGLYAAQSYVDRHGIPAS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCV-LGSG 240
             +  +H  +   DL       F WL A V      PR + L  ++    M+  +  G+G
Sbjct: 181 EADYAQHRFVGH-DLETNRAPFFVWLNAHV------PRENVLFRSTDNRAMELAISAGAG 233

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           I  +     + +P++V+I         +++      L  T K++AF  F+  +A+DW 
Sbjct: 234 IGFMTVKDAESHPDMVQIAPPRPEWYASLWLVSHVDLHRTAKVQAFLKFVKEQAKDWN 291


>gi|299530479|ref|ZP_07043899.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298721455|gb|EFI62392.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 300

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 144/297 (48%), Gaps = 18/297 (6%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR+   F  VA + +F+ AA+ LHL+  ++S QIS LE+ +G++LF+R  R + LTE 
Sbjct: 2   DRLRLITTFMNVAEAENFSRAAQSLHLTPQAVSLQISQLESWLGVRLFHRSTRRMALTED 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         ++  + EL++ +   +G +++A+++ LGQ L+   L +F   YPDI
Sbjct: 62  GRVFYERCRVGLQSIDQGERELRDRASGITGSIKVASSLSLGQLLVAPLLAQFNESYPDI 121

Query: 123 QIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I+L+  N     +D+ MD          P+ + SL+ R++        AAP YL     
Sbjct: 122 RIELVTQNPWPDTVDLGMDIGVIG----GPLLNVSLVARRVGRFTHMLCAAPAYLAAKGT 177

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVL 237
           P S QEL +H  I  G   P+    + W     R   + EP  S +  +  +   Q  + 
Sbjct: 178 PKSPQELLQHCCI--GLRHPRTNRIWPWTFQSARRQTMLEPPFSFITQDPAVQ-RQLVLQ 234

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+GI  L DY  +    +  LV +      P   V+   P+      ++K   +F++
Sbjct: 235 GAGIGQLTDYFARPLIASGALVELPLGYSGPRLDVHVFIPQREHTPRRIKLLNDFLY 291


>gi|168235950|ref|ZP_02661008.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194737137|ref|YP_002115861.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|204928105|ref|ZP_03219305.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194712639|gb|ACF91860.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290665|gb|EDY30019.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204322427|gb|EDZ07624.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 303

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|53729074|ref|ZP_00134172.2| COG0583: Transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208654|ref|YP_001053879.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           L20]
 gi|126097446|gb|ABN74274.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|218511608|gb|ACK77797.1| LysR [Actinobacillus pleuropneumoniae]
          Length = 297

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 33/307 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           ++VF +VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+ G    
Sbjct: 7   IQVFLMVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66

Query: 65  ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               K+  +TS +     T + EL+       G L+IA+    G   L   ++ FL  +P
Sbjct: 67  EYCKKMTELTSAIEQDFLTKRGELR-------GSLKIASNAAFGGTHLLNAIRTFLAKHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL      
Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLAQHGTI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236
            S QEL  H  +   ++  K      W    D   G+  +    S L +N   +++ + +
Sbjct: 179 HSPQELANHRYLAHANVNRK-----EWTFIKD---GQETVLELTSQLTINDTGALLNFTL 230

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--- 290
              GIA+LP Y ++    N  L  ++ D   P++ VY  YP   K    +++F +F+   
Sbjct: 231 ADGGIAMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRKLPQTVRSFVDFLVEE 290

Query: 291 FLKARDW 297
           F    DW
Sbjct: 291 FEGKGDW 297


>gi|300698042|ref|YP_003748703.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074766|emb|CBJ54329.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 297

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 127/274 (46%), Gaps = 8/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F+ VAR  SFT AA QL +S S++S  I  LET +GI+L  R  R ++ TE G
Sbjct: 5   NYHDLLAFFAVARERSFTRAAAQLGVSPSALSHTIRALETRLGIRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + +++     + E    PSG +RI  T    + +L   L + L  YPD++
Sbjct: 65  ERLMQSVAPRFEEIDAELAAVGELRDTPSGTIRITATDYAIRTVLWPRLSKVLRDYPDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D    DI  +  D  +RL   +    +  R    + M    AP YLK    P + 
Sbjct: 125 VEFVTDYGLTDIVAERYDIGVRLGDSLAKDMIAVRVAPDLRMGIVGAPAYLKKHPAPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W     +   + R+   L  N    I+   + G G+A
Sbjct: 185 QDLTTHRCINL--RLPTRGAVYAWELKKGKRELQVRVDGQLTFNGIYEILDAALSGYGLA 242

Query: 243 LLPDYIVKDNPNLVR---IMEDVIT--PSFTVYF 271
            +P+ +V+ +    R   ++ED     P F VY+
Sbjct: 243 YVPEDLVQPHVAAGRLKWVLEDWFPTFPGFHVYY 276


>gi|295675121|ref|YP_003603645.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295434964|gb|ADG14134.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 367

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G    
Sbjct: 7   MRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP +   + 
Sbjct: 67  ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPKVIPDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P   + L 
Sbjct: 127 LVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPTRPEHLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  ++         E +        P GE R+   + +  N+   + Q+ +LG GIA+L
Sbjct: 187 EHPCLSLPS------EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGIAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y++  +     LVR++ D   P   +   YP       K++ F
Sbjct: 241 PSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|167568286|ref|ZP_02361160.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 351

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P+  + L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPMHPEHL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNIVVANNTEMLRQFAMLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ +   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGKLVRLLSEYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|313201979|ref|YP_004040637.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441295|gb|ADQ85401.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 310

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 20/311 (6%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D LR      R+   GS    A Q+ ++ ++ S+ I  LET +GI+L  R  R + LT+ 
Sbjct: 2   DTLRSIETFVRAVEHGSIAAGARQIGITAAAASQNIQRLETTLGIRLLSRSTRSMALTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++   LE  +  + E   +P G+LRIA +   G+N++   +  F+  YP I
Sbjct: 62  GQLYYNAVKDILRDLELAKSSITEFQGEPQGRLRIACSAAFGRNVIADMIPPFMRRYPRI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++LI  +  ID   +  D +IR ++ ++   +I R +  + +   A+P YL     P  
Sbjct: 122 SVELITTDNPIDHITENIDISIRFKQQLE-PGMIARHIARVPILFCASPDYLARAGRPTQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI 241
            +EL  H  +TF   +P       W    D    EP I+  +  N   ++ +  V G+GI
Sbjct: 181 PEELSHHACLTF--RVPASGRMLGWGFLRDGLRFEPDITPTVNSNDIDALARLAVGGAGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTV---------YFCYPEALKNTGKLKAFRNF 289
           A L  ++ +   D+  L  +     T    V         Y  Y +    T KL+ F ++
Sbjct: 239 ARLGAFVAQPLIDSGQLEALFTGNATTEGAVTADIEPLDFYVSYQDKHAMTHKLRVFVDY 298

Query: 290 IF-LKARDWKF 299
           +  L   +W+ 
Sbjct: 299 LVELMPEEWRM 309


>gi|289627450|ref|ZP_06460404.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289648036|ref|ZP_06479379.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330866682|gb|EGH01391.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 298

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA + SFT A ++L +S S + + I  LE  +G++LF+R  R + +T +GS     
Sbjct: 9   VFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEEGLGVRLFHRSTRSIAMTLEGSIFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LET ++EL  +   P G+LRI  ++ L   L+   + EF+  YPDI++ +   
Sbjct: 69  CRRILSELETAEMELSNARDLPRGRLRI--SLPLVSGLVMPVIIEFMRTYPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R   P   S L+ R++    +    AP Y      P    +L +H
Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSRRMGGFQLKIVGAPDYFARRGTPQHPADLSRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +      P   +  +W   + R  G   +   QV   N+   ++     G GIA LPD
Sbjct: 186 ACLLHK--FPSSGKFEHW--PLRREAGADDLDLPQVMVCNTTEVLVDVARAGLGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++     +  LV I+ D    + +    +P +   + +L+ F +F+
Sbjct: 242 FMISSAIRSGELVPILTDYTVHTGSFRLLWPSSKHLSLRLRVFIDFM 288


>gi|218529142|ref|YP_002419958.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|254559964|ref|YP_003067059.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|218521445|gb|ACK82030.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
 gi|254267242|emb|CAX23074.1| Putative transcriptional regulator, LysR family [Methylobacterium
           extorquens DM4]
          Length = 297

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 127/272 (46%), Gaps = 14/272 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA+ GSFT AA++L ++QS++S  ++ LE  +G++L  R  R ++ TE G +L R  
Sbjct: 12  FATVAKEGSFTRAAKRLGVTQSALSHAMNNLEARLGLQLLNRSTRSVSTTEAGERLLRAV 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              + ++E     L     KP+G +RI       + +L   L+  L  YPDI ++++  +
Sbjct: 72  GPQFEQIEVELTALTGMRDKPAGNIRITAPEHAVETVLWPALQRMLPDYPDITVEVVTSD 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              DI  +  D  +R+ + ++   +       + M    AP YLK    P   ++L  H 
Sbjct: 132 ARTDIVAERFDAGVRVGEYVEKDMVAVCIAPPMRMAVVGAPAYLKGRSRPRGPEDLTGHR 191

Query: 191 LITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            I       GDL P   E       V R  G+  ++ L+V     I    + G G+A LP
Sbjct: 192 CINLGRVSRGDLFPWEFEKAGKEVNV-RVEGQLALTSLRV-----IRNAALAGLGLAYLP 245

Query: 246 -DYIVKD--NPNLVRIMEDVITPSFTVYFCYP 274
            + ++ D     LVR+++D   P    +  YP
Sbjct: 246 EEKVLADVAEGRLVRVLKDWCEPFPGYHLYYP 277


>gi|307129111|ref|YP_003881127.1| LysR family transcriptional regulator [Dickeya dadantii 3937]
 gi|306526640|gb|ADM96570.1| Transcriptional regulator, LysR family [Dickeya dadantii 3937]
          Length = 298

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 131/266 (49%), Gaps = 12/266 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++++ F VV   GS T AA QL  + S ISR +  LE+++G+ L +R  R L L+
Sbjct: 1   MKVTLEEMQAFVVVVDCGSVTAAAGQLGQTTSGISRALGRLESKLGMTLLHRTTRRLALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   +V   +E  + ++     KPSG+LRI       Q+++   + EF   YP
Sbjct: 61  EEGQIFLQHARDVLQTVELAEEQIALRRRKPSGRLRINAAASFMQHVIVPLIPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+   + D AIR+ + ++ SS+  R L    +   A+P YL     P
Sbjct: 121 CISLELNTDDVIIDLLEQHTDVAIRIGE-LRDSSIHARPLGATRLRILASPEYLSRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLG 238
           L ++ L  H L+ F        E  N L  +    G+  P +  +  ++   + Q  + G
Sbjct: 180 LGVEALAGHTLLGFTQ-----SESLN-LWPLRSAFGDYYPIVPTIAASNGEMLRQLALRG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMED 261
            GI  L D++ +D+     LV+I+ D
Sbjct: 234 EGIVRLSDFMTRDDVAAGRLVQILAD 259


>gi|238024973|ref|YP_002909205.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879638|gb|ACR31970.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 304

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 138/302 (45%), Gaps = 16/302 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  +  SGS T AAEQL  + S +SR ++ LE ++G+ L  R  R   LT
Sbjct: 1   MKTSTEELQTFVAIIDSGSITAAAEQLGQTVSGVSRALNRLERKLGVTLLRRTTRSSQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L     E+   +E  +  +    V+P+G+LR+        + +   L  F   YP
Sbjct: 61  DEGELLLARAREILQAVEEAETAVSLGRVEPAGRLRVDAATPFMLHAIVPRLPAFTARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++L  + + ID+     D AIR+   +  S+L  R L +  +H  A+P YL     P
Sbjct: 121 DIALELSNNERFIDLIEQRIDIAIRI-GALPDSTLHARPLGSSPLHVLASPAYLAAHGTP 179

Query: 181 LSIQELDKHNLITFGDL-----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            S+ +L +H L+ F D+      P  +         D   G         +S  ++    
Sbjct: 180 RSVADLARHRLLGFSDIETLNRWPLHLRADGSGNGSDDGTGLAITPAHTASSGETLRHLG 239

Query: 236 VLGSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + G GI  L  ++  D+       P L  +M D   P   VY+ +  AL  TG+++ F +
Sbjct: 240 LAGIGIVCLSGFMTADDIAAGRLVPLLTELMTDYRQPVNAVYYRH-AAL--TGRVQGFLD 296

Query: 289 FI 290
           F+
Sbjct: 297 FL 298


>gi|160897007|ref|YP_001562589.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362591|gb|ABX34204.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 307

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 138/290 (47%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA  L +SQ +IS+ I+ LET +   LF+R +R ++LT  G
Sbjct: 6   DLEAWAIFAKVAETGSFAKAAADLGVSQPTISKAITRLETRLKTSLFHRTSRRMSLTASG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  + E+ E S    G +RIA  +  G + L   +  F+  +P++ 
Sbjct: 66  QASLERAARILAEGEAVEAEISEQSKSLRGPIRIAAPMSFGISHLAPAVPAFMAEHPEVT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ ID+     D A+R+   +  SSL+ R+L T+ +    +P Y +    P   
Sbjct: 126 LDLHFSDELIDVVAQGFDIALRISS-LPDSSLLARRLCTVRLLLVGSPEYFERHGRPSHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H  + +  +  +  E + ++        +   + ++VN+   +      G G+AL
Sbjct: 185 RELAQHRALRY--VHSRLGEAWRFVHARRGEFAQVVPTAMRVNNAEGLAPALRAGLGLAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++  ++     L   M+D   PS  ++   P       +++A  +F+
Sbjct: 243 QPEFLAWEDLQSGALQTCMDDWQVPSIALHIVTPPGRARPARVQALIDFL 292


>gi|70732518|ref|YP_262281.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346817|gb|AAY94423.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 294

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 13/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+   VA + SFT AA  L L+QS +SR IS LE ++G++L  R+ R ++LT  
Sbjct: 1   MDLNALRLLVRVAETRSFTRAAGDLGLTQSGLSRAISRLEQQLGVRLLQRNTRSVSLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    + +  +L   +  L +    PSG L+I+T    G+ ++   + E    +P +
Sbjct: 61  GQVLVERAAPLLAELAHAEHLLLDRRESPSGMLKISTPSLFGRKVVMPVIGELTAQHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+ ++ ++ +DI  +  D  +R    IQ   LI R L  +     AAP YL+    P  
Sbjct: 121 SIEAVMTDRVVDIIDEGFDAVVRT-GVIQDQRLIARPLAPLRWVTVAAPGYLERHGTPRH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---MQYCVLGS 239
           + +L +HN +   +L    + D+ ++       G+P    +Q      I   +   VLG 
Sbjct: 180 LADLQQHNCLAVRNLRSGRLVDWQFMDQ-----GKPLDLAVQGRLIFDIGDALVDAVLGG 234

Query: 240 -GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GIA L ++ V+   D   LV ++++    S  +   YP + + + KL AF
Sbjct: 235 FGIAQLMEFAVREALDTGRLVPVLQEHAGRSRELSLVYPPSRQCSPKLTAF 285


>gi|325923142|ref|ZP_08184832.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325546378|gb|EGD17542.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 297

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 94/187 (50%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     + R GSFT AA +L +SQS++S  I GLE  +G++L  R  R +  TE G +L 
Sbjct: 9   LLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEASLGLRLLTRTTRSVAPTEAGERLI 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +  + ++E     L E    P+G +RI  T    + +L   L + L  YPDI+++++
Sbjct: 69  QTVAPRFAEIEEALSALSEMRDTPAGTVRITATDYAARAILWPKLSKLLRQYPDIKVEIV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +DN   DI  D  D  +RL   ++   +  R    + M   AAP YL     P + Q+L 
Sbjct: 129 VDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMAIVAAPSYLARRPIPKTPQDLT 188

Query: 188 KHNLITF 194
            H+ I  
Sbjct: 189 AHSCINL 195


>gi|325914407|ref|ZP_08176754.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539415|gb|EGD11064.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 297

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 115/248 (46%), Gaps = 11/248 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     + R GSFT AA +L +SQS++S  I GLE  +G++L  R  R +  TE G +L 
Sbjct: 9   LLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEASLGLRLLTRTTRSVAPTEAGERLI 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +  + ++E     L E    P+G +RI  T    + +L   L + L  YPDI ++++
Sbjct: 69  QTVAPRFAEIEEALSALSEMRDTPAGTVRITATDYAAREILWPKLSKLLQQYPDIHVEMV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +DN   DI  D  D  +RL   ++   +  R    + M   AAP YL     P + Q+L 
Sbjct: 129 VDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMAIVAAPSYLARRPLPKTPQDLT 188

Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H  I     T G +    +E  +    + R  G+     L  N     M   V G GIA
Sbjct: 189 AHRCINLRMKTAGGIYAWELEK-DGREVIVRVQGQ-----LTFNGAYEAMDAAVDGFGIA 242

Query: 243 LLPDYIVK 250
            + + +V+
Sbjct: 243 FVQEDLVR 250


>gi|187924115|ref|YP_001895757.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715309|gb|ACD16533.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 298

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 130/284 (45%), Gaps = 10/284 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F   A SGSF  AA    +S     + +S LE  VG +L  R  R  +LTE G   +
Sbjct: 7   MAIFVKTADSGSFAAAALAFGISSQMAGKHVSTLEERVGARLLNRTTRRQSLTEIGQIFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +       +   QE S  P G+LRI   +  G   L   +  +L  +P+++++L 
Sbjct: 67  ERCKALLADAAAAESVAQELSASPRGRLRITAPVTFGACCLAPLIARYLKAHPEVRVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  + AIRL   +  SSLI R L+   + A A+P YL    EP + +EL 
Sbjct: 127 LTDRFVDLIDEGYEAAIRL-GALSDSSLIARPLMPYRLVACASPGYLAERGEPRTPRELT 185

Query: 188 KHNLITFG-DLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  ++F    +P    D  W  A        P     + N   +++   + G G+ L P
Sbjct: 186 AHECLSFAYTSMPA---DTAWRFADAQGEQAVPIAGRFEANDVKALLAAALNGGGVMLAP 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  VKD      LVR++      +  ++  +P A + T KL+AF
Sbjct: 243 EVAVKDELAAGRLVRLLTGYEATARPMHLVFP-ASRVTPKLRAF 285


>gi|94499299|ref|ZP_01305837.1| transcriptional regulators, LysR family protein [Oceanobacter sp.
           RED65]
 gi|94428931|gb|EAT13903.1| transcriptional regulators, LysR family protein [Oceanobacter sp.
           RED65]
          Length = 293

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 147/297 (49%), Gaps = 26/297 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ ++ F  VA +  F+ AA+QL  S S ISRQ++ LE  +G++L  R  R ++LT+ G
Sbjct: 3   NFEGIQEFVAVAEAQGFSAAAKQLDASTSHISRQVARLEERLGVQLLARTTRMVSLTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    E+   L+     + + S+K +G L+++      +  +   L +F   +P++ 
Sbjct: 63  ERYYTQCRELIDGLQQADESVSDESIKLTGTLKVSAAGTFAEQFIAPCLMQFAKSHPELS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++  +++ ++   +  D AIR  + ++ S L+ R+L+  H+ A A+P YLK   EP   
Sbjct: 123 IEMDFNSRMVNFVEEGFDFAIRYGR-LKDSGLVARRLIQRHLMAAASPEYLKQFGEPTHP 181

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
            +L  H  L+T  D         +WL + ++   + ++S   + N+   ++Q C  G GI
Sbjct: 182 DDLKHHKCLLTNND---------HWLFSENQQSFDVKVSGPWRSNNANVVLQACEHGMGI 232

Query: 242 ALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A +P    + + N  R   I+ D  +   T +  Y             R F+ ++AR
Sbjct: 233 AYMPVSSFEQSINSGRLKPILRDYWSHGITSWIVYQN-----------RRFLPMRAR 278


>gi|6580781|gb|AAF18287.1| transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 302

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 131/285 (45%), Gaps = 6/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F +VA+  SFT AA +L +SQS++S  +  LE  + + L  R  R +T T  G  
Sbjct: 7   NDLQSFLIVAQEKSFTKAAAKLGVSQSALSHTVRQLEARLNLTLLIRTTRSVTPTSAGEY 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +  +  + ++E     + E   +P+G +RI +T D    +++  +K FL  YP ++I+
Sbjct: 67  LIQNMAPHFDQIEKQLASIGELRNQPTGTIRITSTDDALAYVIRPKIKGFLQKYPGVKIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ D K +DI  +  D AIRL + +            I      +P Y +N   P + Q+
Sbjct: 127 LVSDLKLVDIFTEKFDAAIRLGENVTKEMASVPLTPDIRFTVVGSPEYFQNKPIPETPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  IT    +P     + W      R I       L  NS   I   C+ G G+A +
Sbjct: 187 LLNHQCITI--RLPTHGGIYAWEFEKAGRDIKIRVDGPLVFNSIFPIRNACLDGLGLAHM 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           PD + K   +   L+ ++ED        + C+P   +N   L  F
Sbjct: 245 PDIMAKLYIEEGRLIPVLEDWCPYWSGYHLCFPHHYENIRPLSLF 289


>gi|325498364|gb|EGC96223.1| transcriptional regulator, lysR family [Escherichia fergusonii
           ECD227]
          Length = 297

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  I  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANALPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  N     +   + G GIA
Sbjct: 185 HELQNHQCINM--RLPTAGGIYHWEFECEGKPLRVRVDGQLTFNLLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275


>gi|324114572|gb|EGC08540.1| LysR substrate binding domain-containing protein [Escherichia
           fergusonii B253]
          Length = 297

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  I  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANALPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  N     +   + G GIA
Sbjct: 185 HELQNHQCINM--RLPTAGGIYHWEFEREGKPLRVRVDGQLTFNLLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275


>gi|187920768|ref|YP_001889800.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719206|gb|ACD20429.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 318

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 146/294 (49%), Gaps = 11/294 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LRVF  VAR  SF+ AAE L +S + +S++I+ LET +G +L +R  R + +TE
Sbjct: 6   SPDLGDLRVFCEVARKSSFSAAAEALSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +++    ++   ++    ++  +   P GKLRI+++   G+  +   L  F   YP 
Sbjct: 66  AGERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ +D+  +  D  +R+   I +  LI R+L + H    A+P Y+     P 
Sbjct: 126 LSVRLDLFDRLVDVGGEGFDLDVRIGDEI-APHLIARRLASNHRVLCASPDYIARHGAPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + EL  H  +     I +    F  W  TV       +++  L  N     +++ + G 
Sbjct: 185 QLAELSSHACLA----IKERDHPFGLWRLTVRGETVSIKVTGPLSTNHGEVAVEWALAGR 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI L   + V+   ++ +L +++ +V  P+  ++  YP  L  + K++   +F+
Sbjct: 241 GIVLRSMWDVRPLLESGHLQQVLPEVTQPA-NLWAVYPARLAQSAKVRVCVDFL 293


>gi|320158268|ref|YP_004190646.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
 gi|319933580|gb|ADV88443.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
          Length = 307

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 146/293 (49%), Gaps = 7/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  L +F  V   GSF+ AA+QLHL++S++S++I+ LE ++G +L  R  R L+LT
Sbjct: 1   MHSQFSDLPIFVSVVECGSFSSAAKQLHLTKSAVSKRINHLEDKLGSRLLNRTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   ++  +        + E   +P G+L+I   +  G   +   + EFL  YP
Sbjct: 61  EAGERYYEYAAQALNLARQGVDAVTELQGEPRGRLKITAPMTFGVLHVAPLISEFLSRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L L+++ +D+     D  IR+   +  S+LI ++L        A+P Y+     P
Sbjct: 121 KVEVDLQLEDQMVDLVAGRFDLGIRIGH-LPDSNLIAKRLAPCRTVLCASPDYVSRMGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +     +   ++ +L   +     P+ + + VN+  +I +  + G G
Sbjct: 180 SKPDDLAQHNCLRYSYF--RGGNEWLFLNQGNEYKVLPKGNFI-VNNSEAIRRALLAGIG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +P +I+     +  LV +M +   P   +Y  +PE      K++ F +F+
Sbjct: 237 IAQMPTFIIGKELRDRKLVTLMPEYQLPQHFLYAVFPERKHMPLKVRMFIDFL 289


>gi|197335587|ref|YP_002155860.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197317077|gb|ACH66524.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 300

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 138/288 (47%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GS T AAE+L+L++S+IS+++S LE ++G+KL  R  R  +LTE G  
Sbjct: 5   ESMRIFITVVETGSITRAAERLNLAKSAISKRLSELEQQLGVKLLNRTTRTSSLTEAGQV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++     +  +S K +G L++A  +  G   L   L  F  L+P++++ 
Sbjct: 65  YLNKCKLILDEVDDLHCHISSTSSKLNGVLKLAVPLTFGLKHLVPALDNFAKLHPELKLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +K ID+  D  D AIR+   + +S+L  + L  IH     +P YL       +  +
Sbjct: 125 IDFSDKKIDLVEDGVDLAIRIGS-LNNSTLRAKPLAPIHHVLCVSPDYLTEHGHITTPND 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+ +     + +     +   ++ +  P  S    N+   +    V G G+   P
Sbjct: 184 LKSHKLLRYSQ---QPLSGVELIDNNNKTMTVPMESFCIANNGDFLKTMAVSGHGVLFTP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +IV +   N +L+ IM D    S   Y  YPE      K++   +F+
Sbjct: 241 KFIVWEELANGSLIPIMTDYRFNSIKAYAVYPETRYLPRKVRMLIDFL 288


>gi|162147153|ref|YP_001601614.1| transcriptional regulator protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209544209|ref|YP_002276438.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785730|emb|CAP55301.1| Transcriptional regulator protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531886|gb|ACI51823.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 295

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 123/272 (45%), Gaps = 12/272 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VA +GSF+  + +   SQ +ISR I+ LE   G  LF R  R L +TE G  L
Sbjct: 6   ALHSFVRVAATGSFSAVSRETGASQPTISRHIALLEAHYGATLFARTTRSLMMTEDGRSL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                EV   LET +  L       SG +R+  T   G     G L E L  +PD+ ++L
Sbjct: 66  LPHAYEVLEILETAETALGRRRASVSGLVRLGVTTAFGL-YTTGRLGELLEQHPDLSVEL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I+ +   D+  +  D A+R+ + I   SLI R+L T+   A A P YL     P   ++L
Sbjct: 125 IMRDGFGDLVEEGLDLAVRVGE-IAEGSLIARRLGTVKRIAVATPAYLDRRGTPQHPRDL 183

Query: 187 DKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             H  I  T+G        + N   +V    G       + NS  +++Q  + G GI LL
Sbjct: 184 LNHPCIAYTYGGTRHDWHFEGNGEESVVAASGP-----FRANSSEAVLQATLAGMGIGLL 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           P + V ++     LVR+  D   P    Y  +
Sbjct: 239 PSFQVDEDVASGRLVRLFPDWTVPELPFYAVH 270


>gi|163751038|ref|ZP_02158269.1| Transcriptional regulator [Shewanella benthica KT99]
 gi|161329199|gb|EDQ00198.1| Transcriptional regulator [Shewanella benthica KT99]
          Length = 173

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++++VF+ V  SGSF+ AA+ LH++ SSI+R I  LE ++   LF R  R L LTE+G 
Sbjct: 2   LEQIKVFHQVVDSGSFSQAAQVLHMAPSSIARNIDNLEAQLKTTLFKRSTRQLILTEEGR 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++ + ++    +    E++ +   P G LRI+     G   L   + EFL +YPD+QI
Sbjct: 62  YFYQQSGKLVENADILLAEMRGTQDTPQGLLRISVFESFGNLCLAPIIPEFLQMYPDVQI 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV 161
            L LDNK +D+  D  D AIR+  P Q S L  RKL+
Sbjct: 122 DLDLDNKLVDLHSDNVDLAIRIGVP-QDSGLKARKLL 157


>gi|170720874|ref|YP_001748562.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758877|gb|ACA72193.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 312

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 139/288 (48%), Gaps = 14/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++T+ G  
Sbjct: 7   NDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDDGQV 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     V   L+  +  L      PSG+LR++  + LG+  +  +++  L  +P + + 
Sbjct: 67  LYERCVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIEYCLKDWPSLSVD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    EP + ++
Sbjct: 127 ITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPTYLAEHAEPKTPED 186

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H  + F   G L+P       W   V+   +       LQ++S  S+ Q  V G GI
Sbjct: 187 LTGHQCLHFVSGGRLLP-------WNFRVNGSAVSVTHGGRLQMDSAESLHQSAVAGLGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A LP Y+V D+     LV+++      +  +   YP     + K++ F
Sbjct: 240 ATLPSYVVNDDLRSGKLVQLLAGYAEAAEPIRVIYPSKRHLSPKIRLF 287


>gi|54303246|ref|YP_133239.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46916674|emb|CAG23439.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 297

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 1/187 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  V  S SF+ A   LH++ SS++R I  LE ++ + LF R  R L LTE+G  
Sbjct: 3   DLVRVFTQVVESSSFSKAGHALHMAPSSVARNIDNLEKQLRVTLFKRSTRQLLLTEEGQY 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S++    +     + +++  PSG LRI+     G   +   L  FL  YP++ + 
Sbjct: 63  FLIGASKLMEDADQLIRSMDKTNDVPSGTLRISVFESFGNLCINPILPAFLERYPNVTVD 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LD++ +D++ +  D  IR+ +P+  SSL  R L+  H    A+P YL+ C  P + +E
Sbjct: 123 IELDDRMVDMNAENIDLGIRIGRPVD-SSLNARMLMPNHTILCASPSYLERCGTPTTPEE 181

Query: 186 LDKHNLI 192
           + +HN +
Sbjct: 182 VSQHNCL 188


>gi|154246871|ref|YP_001417829.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160956|gb|ABS68172.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 292

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 138/289 (47%), Gaps = 15/289 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  +GSF+ AA Q+ + Q +IS+ I+ LE  + ++L  R    L  T+ G + +
Sbjct: 7   MQVFVTVVEAGSFSAAARQIGVGQPAISKTIAQLEERLQVRLLVRSTHSLAPTDAGVRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   + +  ++E + +    SG+LR++      + L+   L EFL  +PDI+I ++
Sbjct: 67  ERARAAIREADEAELEARGAGAGLSGRLRVSAATTFARLLIVPRLPEFLARHPDIEIDVL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ ID+  +  D A+R+ + +  S+ I R++        A P YL     PL   +L 
Sbjct: 127 LDDRVIDLVSEGIDMALRMGE-LTDSAAIARQIARSRRSVIATPAYLSRAGTPLVPADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H  I +  L        +W  T  R   E  ++    +++++   I    +   G+ + 
Sbjct: 186 THEAIVYSQL------GASW--TFRRNGTEASVAVRGRVRLSAAEGIRAAVLADLGLTVN 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D++     ++  + R++ED   P   ++  +P     + K +AF +++
Sbjct: 238 SDWMFAPEIESGAVRRVLEDWELPPVDLWAVFPTGRLASAKARAFADYV 286


>gi|311105376|ref|YP_003978229.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760065|gb|ADP15514.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           57 [Achromobacter xylosoxidans A8]
          Length = 310

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 135/279 (48%), Gaps = 5/279 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA SGSFT AA +L +S +S+S+ +S LE ++G+KL  R  R L+LT+ G  L +  
Sbjct: 14  FVRVADSGSFTAAAHRLDISTASVSKSVSLLEAKLGVKLLNRTTRNLSLTDDGELLLQRC 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  ++E  + E+  +S  P GKLR+   + LG+ ++   L      YP++ I     +
Sbjct: 74  RHILLEVEAAEAEVTGASESPRGKLRVHAPVGLGRKVIMPALLSLTARYPELSINADFSD 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  +++ +  D  IR+      S +I + L  +     A+P YL     P +  EL++HN
Sbjct: 134 RIPNLAEEGLDATIRI-GVTADSRVIAKNLSQLRYVTCASPAYLAAHGTPTTPAELERHN 192

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + +         ++++    +R    P    L VN   +I+   V G+GIA +  +I +
Sbjct: 193 CLAYVQWQTGRYHEWDFQKGDERYTITPG-GNLNVNHPEAILDAVVAGAGIARMASFIAE 251

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
               +  L  ++ D + P   V   Y      + +++AF
Sbjct: 252 SAVMDGRLKLVLTDWMAPGAPVQLVYLPNRHLSPRIRAF 290


>gi|182678435|ref|YP_001832581.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634318|gb|ACB95092.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 296

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 142/290 (48%), Gaps = 19/290 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A + SF  A     +S S++ + I+ LE  +G++LF+R+ R + LT +G+   + 
Sbjct: 9   AFVSAAEALSFVEAGRLHGVSASAVGKTIARLEARLGVRLFHRNTRSMKLTAEGALFLQR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +L+  + EL +    P GKLR++    +G  LL   L EF+  YP++++ +   
Sbjct: 69  CHRILGELDAAEQELSDIRAAPKGKLRVSLPA-IGTMLLP-VLSEFIQRYPEVELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R+ +    + L+ R+L   H H  A+P YL+    P S  EL +H
Sbjct: 127 DRKVDLIDEGFDAAVRIGE-TDDTRLLSRQLGVFHRHLVASPDYLEKVGRPESATELPRH 185

Query: 190 NLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             +     T G + P  +  +  +      +    +S +  NS  ++    + G G+A L
Sbjct: 186 PCLLYRFPTTGKIEPWPVPGWESI------LSSRELSTVSCNSIETLTYLALEGRGVACL 239

Query: 245 PDYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD+ VK    DN  L R++   ++    +   +P + +   KL+AF + +
Sbjct: 240 PDFEVKSALADN-KLERLLVTEVSTPRAMTILWPTSKQLAPKLRAFIDLL 288


>gi|312959668|ref|ZP_07774185.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311286385|gb|EFQ64949.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 298

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 130/291 (44%), Gaps = 23/291 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A  GS+  AAE+L +S   +++ ++ LE+ +G +L  R  R  +LTE GS  +
Sbjct: 8   MNAFVTAAELGSYARAAERLGMSPQMVAKHVAALESRLGARLLNRTTRRQSLTELGSAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + E      Q  +  P GKL+I   +  G + L   +  FL  +PD++I L 
Sbjct: 68  ERCKHILTEAEAADSLAQIMNDTPRGKLKITAPVTFGSHSLMPLITGFLRDHPDVEIDLH 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  + A R+  P+ ++ L  R L    +   AAP YL     P    +L+
Sbjct: 128 LTDRFVDLVEEGYEAAFRI-GPLATTGLTARPLAPYRLVVCAAPAYLAARGTPRVPADLE 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR---------PIGEPRISCLQVNSYLSIMQYCVLG 238
            H          +C+    W    DR         P      S LQ+N   ++M   + G
Sbjct: 187 HH----------ECLGYAFWSRPADREWVFFQGTTPYKVQVASRLQINESRALMSAALDG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GI L P+  ++       LVR++ D   PS +++  Y    + T KL+ F
Sbjct: 237 FGIVLGPEDFLRGALARGELVRVLPDFDAPSRSMHLVYTANRQRTAKLRRF 287


>gi|307129017|ref|YP_003881033.1| hypothetical protein Dda3937_01584 [Dickeya dadantii 3937]
 gi|306526546|gb|ADM96476.1| Hypothetical transcriptional regulator ycjZ [Dickeya dadantii 3937]
          Length = 297

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 132/287 (45%), Gaps = 6/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F +VA+  SFT AA +L +SQS++S  +  LE  +GI+L  R  R ++LTE G
Sbjct: 5   NFSDLISFRMVAQEKSFTRAAAKLGISQSALSHAMRSLEERLGIRLLTRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S   ++LE    +L E   KP+G +R+         +L   LK FL  +PDI 
Sbjct: 65  ERLLGNISPSLNELEFALEDLGEMRDKPAGNIRLTAGEHAVNFVLWPVLKPFLSQHPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI  +  D  +RL + +    +  R    + M    +P Y  N   P + 
Sbjct: 125 LEITVDNTLTDIVNERFDAGVRLGEQVAKDMIAVRIGPDMRMAVVGSPAYFANHTAPDTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q L +H  I     +P     F W  + D R I       L  N+    +   + G G+A
Sbjct: 185 QSLQQHRCINM--RLPTLGGLFAWEFSRDGREIRVRVDGQLTFNNLQHRIDAALSGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P+  ++    +  L++++E    P    Y  YP   ++T     F
Sbjct: 243 YVPEDTIRQAVADGRLIQVLESWCEPFPGYYLYYPSRKQHTAAFSLF 289


>gi|254000005|ref|YP_003052068.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253986684|gb|ACT51541.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 310

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 20/311 (6%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D LR      R+   GS    A Q+ ++ ++ S+ I  LET +GI+L  R  R + LT+ 
Sbjct: 2   DTLRSIETFVRAVEHGSIAAGARQIGITAAAASQNIQRLETTLGIRLLSRSTRSMALTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++   LE  +  + E   +P G+LRIA +   G+N++   +  F+  YP I
Sbjct: 62  GQLYYNAVKDILRDLELAKSSITEFQGEPQGRLRIACSAAFGRNVIADMIPPFMRRYPRI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++LI  +  ID   +  D +IR ++ ++   +I R +  + +   A+P YL     P  
Sbjct: 122 SVELITTDNPIDHITENIDISIRFKQQLE-PGMIARHIARVPILFCASPDYLARAGRPTQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI 241
            +EL  H  +TF   +P       W    D    EP I+  +  N   ++ +  V G+GI
Sbjct: 181 PEELSHHACLTF--RVPASGRMLGWGFLRDGLRFEPDITPTVNSNDIDALARLAVGGAGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTV---------YFCYPEALKNTGKLKAFRNF 289
           A L  ++ +   D+  L  +     T    V         Y  Y +    T KL+ F ++
Sbjct: 239 ARLGAFVAQPLIDSGQLEALFTGNATSEGAVTADIEPLDFYVSYQDKHAMTHKLRVFVDY 298

Query: 290 IF-LKARDWKF 299
           +  +   +WK 
Sbjct: 299 LVEVMPEEWKM 309


>gi|117921163|ref|YP_870355.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117613495|gb|ABK48949.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 295

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 121/254 (47%), Gaps = 17/254 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           ++  D LR F  VARSGSF  AA+ L +  S++SR+I  LET++ ++L  R A  + LT 
Sbjct: 4   NYSLDDLRCFCAVARSGSFKEAAQSLGMPLSTLSRRIRQLETDLQLRLLNRDAHRVILTS 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +    +  ++ +L     +L     +P GK+RI+  I+ G + L+    +FLL YPD
Sbjct: 64  IGEQYFERSVALFDELNNIDEDLHRDKYQPQGKIRISAPINSGTHFLRSIFYDFLLQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L   N  IDI  +  D A R+  P+   + I R L  IH    + P Y  +     
Sbjct: 124 IQLDLSFSNSLIDIEAEGMDVAFRVGNPV-VENWIARPLKHIHFILCSHPDY--DISSIT 180

Query: 182 SIQELDKHNLITFGDLIP------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           +  +L  H  I    +IP         E+F++      P    R   L+V+  + +    
Sbjct: 181 TPDKLCGHPTIICHPMIPWQLVHKTTGEEFDY-----HPNKGVR---LEVDELMLLTHAI 232

Query: 236 VLGSGIALLPDYIV 249
             G GI  +PDY  
Sbjct: 233 KTGIGIGYVPDYFA 246


>gi|299069993|emb|CBJ41279.1| Putative HTH-type transcriptional activator aaeR [Ralstonia
           solanacearum CMR15]
          Length = 301

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 140/307 (45%), Gaps = 40/307 (13%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   G+F  AA +L L+ SSIS+ +  LETE+G+ L +R  R L+LTE G   
Sbjct: 9   RMAIFARVVELGAFNRAARELGLTTSSISQHVRALETELGVTLLHRSTRKLSLTEAGRVY 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   + V H     Q ++ E   +P+G+LRI    +L    L   L++F+  +P + I+ 
Sbjct: 69  YEECANVVHAAARGQQKVAELRDEPAGELRITAPSELAHQHLVPALRDFIAAHPRLAIRF 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ID+     D A+R+ + +Q SSL+ R++        AAP YL+    P +    
Sbjct: 129 ELGDEKIDLVEHRVDLAVRIGE-LQDSSLVARRIAWFDELICAAPEYLERVAVPAT---- 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----------SCLQVNSYLSIMQYCV 236
                       P+ + D +WL  +  P+GEP            + L+V+  L+  Q   
Sbjct: 184 ------------PQGLADLDWL--IFTPLGEPAFVQLRDGQGHEARLRVHGRLATNQAQT 229

Query: 237 L------GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           L      G G+A L    +        LV ++ +     F VY   P   ++   LK  R
Sbjct: 230 LKALTLDGHGVARLLKVDIGAELAQGRLVPLLPEWRLAGFGVYAITPR--RDAQPLKVTR 287

Query: 288 NFIFLKA 294
               L+A
Sbjct: 288 CIEHLRA 294


>gi|134292495|ref|YP_001116231.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135652|gb|ABO56766.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 307

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 147/299 (49%), Gaps = 31/299 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+T+ G +
Sbjct: 8   DDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTDAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + ++
Sbjct: 68  VFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLNVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D  +R+   I +  LI R+L   +    A+P YL     P ++ +
Sbjct: 128 LDLFDRLVDVVGEGYDVDVRIGDEI-ADHLIARRLAANYRVLCASPEYLARRGTPRTLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQ 233
           L  H+ +   +               D P+G  R+      + ++V   LS       +Q
Sbjct: 187 LASHDCLAIKER--------------DHPLGVWRLNVRGETATVKVGGALSTNHGEVAVQ 232

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + + G GI L   +      +   L R++ D I P+  ++  YPE +  + K++   +F
Sbjct: 233 WALAGRGIVLRSIWEAGPLIERGELRRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDF 290


>gi|16761686|ref|NP_457303.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143170|ref|NP_806512.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|25319788|pir||AC0854 probable LysR-family transcription regulator STY3037 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503987|emb|CAD06018.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138803|gb|AAO70372.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 310

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 13  RMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 73  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 133 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 187 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 241

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 242 GSGVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 297


>gi|27377795|ref|NP_769324.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27350940|dbj|BAC47949.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 307

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 136/297 (45%), Gaps = 14/297 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF   A  GS + AAE L +S ++ SR +S LE  + ++L  R+ R L LTE G +L
Sbjct: 6   QLEVFAKTAELGSLSKAAEALRMSNAAASRHLSALEERLAVRLIERNTRRLWLTEAGQEL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              +S V  +L   +  + + ++ P G LR+ +++      L   L  F   YP + +Q+
Sbjct: 66  LERSSRVLSELAEAEDIVSDRALSPQGMLRVTSSLSFAVIYLAPMLPAFRARYPKLNMQI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              N+  D      D AIR R+    S++I R++  +     AAP YL +  E     +L
Sbjct: 126 TTANRYPDFIEAGIDVAIRTREQEPDSNIIVRRIGQMRRVLAAAPSYLASAGELEQPADL 185

Query: 187 DKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
            +HN++ +    D     +   N   TV       RI+  L  N    I    + G GI 
Sbjct: 186 ARHNMLVYNLANDPYSLRLRKGNGAQTV-------RITPTLDSNDGQVIRGAALAGLGIL 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + P YIV+ +     LV ++ D   P  T+   Y        K++AF +F+    R+
Sbjct: 239 IQPLYIVQSDIAAGRLVPVLLDWELPLLTMNIAYQNRAGLPAKIRAFSDFLVTHIRE 295


>gi|315182427|gb|ADT89340.1| hypothetical transcriptional regulator, LysR family protein [Vibrio
           furnissii NCTC 11218]
          Length = 293

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 122/247 (49%), Gaps = 9/247 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  SGSF+ AAE + +  + +SR +S LE ++GI +  R  R L LTE+G +
Sbjct: 6   DDLEILITVVDSGSFSQAAEVMDVQVAKVSRAVSRLEQQLGITILNRTTRRLELTEEGKR 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +L   + ++      P GKLR+        + L   ++EF   YPDI ++
Sbjct: 66  FVESVRAGLQQLRQAEEDIVSRGELPKGKLRVDAASPFMLHQLAPLVREFHAAYPDIDLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    ++  A+P YL     P + QE
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LNDSTLHARPLGKSALYVVASPDYLAQRGFPTTPQE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+++ F    P+ +  +    T      EP I+C   +S  ++ Q  + G+GIA L 
Sbjct: 185 LHQHDIVGF--TAPRTLNIWPLNGT---EFIEPTIAC---SSGETVRQLVIAGNGIACLS 236

Query: 246 DYIVKDN 252
            ++VK++
Sbjct: 237 GFMVKED 243


>gi|262403089|ref|ZP_06079649.1| transcriptional regulator [Vibrio sp. RC586]
 gi|262350588|gb|EEY99721.1| transcriptional regulator [Vibrio sp. RC586]
          Length = 301

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTDAGEIFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPVYFTQCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 AEHRCLT-GSVKRWSYQHQETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVGFSLIYHKDKYQPVRLKRFIEF 290


>gi|323524526|ref|YP_004226679.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323381528|gb|ADX53619.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 315

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 144/288 (50%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRQVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +LE  +  +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQVLTELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDIT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R +   H+   A+P YL+    P +  +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARPIAMAHLVLCASPDYLRRRGTPKTAADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
            +HN I +  +        + L T    +   R+S   + ++L   +  VL G+GIALL 
Sbjct: 187 ARHNFIQYAGV-----SGLDVLQTTGE-VARVRLSGNLIVNHLEAQRVMVLQGAGIALLG 240

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNF 289
             ++  +     LV ++ D + P    ++  Y      + K+++F +F
Sbjct: 241 TEVIGADLAAGRLVPLLVDEVPPRELPIHVVYASRRHLSAKVRSFVDF 288


>gi|190575769|ref|YP_001973614.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190013691|emb|CAQ47326.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 301

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+ R+F  V    SFT AA+QL L +S++S  I+ LE  +G +L  R  R +  T  G  
Sbjct: 5   DRFRIFTRVVECSSFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVATTHDGDV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H     +  ++E  +   ++   +P G L+I     +G+ ++   L +F   +P ++++
Sbjct: 65  FHARCLRLIAEVEDAESLFRQDDAQPVGLLKIDVPSRIGRRIIAPALPDFFARHPQVEVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  D  D  +R+ + +  SSL+ R L  +     AAP YL+    P    +
Sbjct: 125 LGMTDRAVNLIEDGCDAVLRVGQ-LGDSSLVARTLGQLDFVNVAAPAYLREYGVPQQPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  + +       +E + W   T  R +  P    ++VNS  + +  CV G G+  +
Sbjct: 184 LQQHRAVNYASPTTARVEPWEWQEGTQLRTLPMP--GWVRVNSAEASIACCVAGLGLLQI 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P Y V+    +  LV +M   +     V    P       +++ F  ++ 
Sbjct: 242 PRYDVQAELQSGALVEVMPQHVAQPLPVTLLQPHRQHRAQRVQVFIEWLL 291


>gi|16766218|ref|NP_461833.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16421461|gb|AAL21792.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|261248048|emb|CBG25882.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995042|gb|ACY89927.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159471|emb|CBW18990.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323131264|gb|ADX18694.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989783|gb|AEF08766.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 310

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 144/294 (48%), Gaps = 19/294 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 13  RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 73  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDLRIRH 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 133 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239
            E          + +P  +    W  T +      +   +   + V+S  S+M + + GS
Sbjct: 187 LESLAQAEWIIHERLPTPLR---WTVTSNHGQHSRLEISKAGKISVDSARSLMAFALAGS 243

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 244 GVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 297


>gi|257485224|ref|ZP_05639265.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331010879|gb|EGH90935.1| regulatory protein LysR, substrate-binding protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 298

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA + SFT A ++L +S S + + I  LE  +G++LF+R  R + +T +GS     
Sbjct: 9   VFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEEGLGVRLFHRSTRSIAMTLEGSIFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LET ++EL  +   P G+LRI  ++ L   L+   + EF+  YPDI++ +   
Sbjct: 69  CRRILSELETAEMELSNARDLPRGRLRI--SLPLVSGLVMPVIIEFMRTYPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R   P   S L+ R++    +    AP Y      P    +L +H
Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSRRMGGFQLKIVGAPDYFSRRGTPQHPADLSRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +      P   +  +W   + R  G   +   QV   N+   ++     G GIA LPD
Sbjct: 186 ACLLHK--FPSSGKFEHW--PLRREAGADDLDLPQVMVCNTTEILVDVARAGLGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++     +  LV I+ D    + +    +P +   + +L+ F +F+
Sbjct: 242 FMISSAIRSGELVPILTDYTVHTGSFRLLWPSSKHLSLRLRVFIDFM 288


>gi|332529454|ref|ZP_08405413.1| transcriptional regulator, LysR family protein [Hylemonella
           gracilis ATCC 19624]
 gi|332041100|gb|EGI77467.1| transcriptional regulator, LysR family protein [Hylemonella
           gracilis ATCC 19624]
          Length = 317

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 141/294 (47%), Gaps = 18/294 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R    V  +GSFT AA+ L++  +++S+ +  LE  +G++L  R  R +T+T +G + +
Sbjct: 7   MRALARVIEAGSFTRAADSLNMPIATVSKLVRELEKHLGVRLLQRTTRRVTVTPEGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +   +E        +  KP G LR+       +++L   L +F+  YPDI+I L 
Sbjct: 67  AKSGRILRDIEDIDGAFNLARGKPRGHLRVDVGGSTARDVLIPILGDFMARYPDIRIDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           + +K ID+  + ADC IR    ++SSSL+ R+L    +   A+P YLK    P    EL 
Sbjct: 127 VSDKSIDMVGENADCVIR-GGAMESSSLVARQLGEAVLITCASPGYLKQFGTPAYPDELK 185

Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           + H L+++     G  +P     F +    D+   E ++   + +N   + M  CV G G
Sbjct: 186 NGHRLVSYVSSNTGRPVP-----FRFARNGDK--SEIKVDHIIGINESNAHMAACVAGLG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +     Y       +  LV I+ +     +     YP+A   T +L+ F +++ 
Sbjct: 239 VIQTFGYAAATALRDGTLVEILPEWRPARYPFQIVYPQARHMTHRLRVFVDWLL 292


>gi|27367995|ref|NP_763522.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27359568|gb|AAO08512.1|AE016813_264 Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 307

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 146/293 (49%), Gaps = 7/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  L +F  V   GSF+ AA+QLHL++S++S++I+ LE ++G +L  R  R L+LT
Sbjct: 1   MHSQFSDLPIFVSVVECGSFSSAAKQLHLTKSAVSKRINHLEDKLGSRLLNRTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   ++  +        + E   +P G+L+I   +  G   +   + EFL  YP
Sbjct: 61  EAGERYYEYAAQALNLARQGVDAVTELQGEPRGRLKITAPMTFGVLHVAPLISEFLSRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L L+++ +D+     D  IR+   +  S+LI ++L        A+P Y+     P
Sbjct: 121 KVEVDLQLEDQMVDLVAGRFDLGIRIGH-LPDSNLIAKRLAPCRTVLCASPDYVSRMGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +     +   ++ +L   +     P+ + + VN+  +I +  + G G
Sbjct: 180 SKPADLAQHNCLRYSYF--RGGNEWLFLNQGNEYKVLPKGNFI-VNNSEAIRRALLAGIG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +P +I+     +  LV +M +   P   +Y  +PE      K++ F +F+
Sbjct: 237 IAQMPTFIIGKELRDRKLVTLMPEYQLPQHFLYAVFPERKHMPLKVRMFIDFL 289


>gi|270262684|ref|ZP_06190955.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043368|gb|EFA16461.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 299

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 137/289 (47%), Gaps = 17/289 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA + SF+ A  QL +S S++ + ++ +E  + ++LF+R  R +TLT +G+     
Sbjct: 9   AFVQVAETRSFSDAGRQLGVSSSAVGKSVARMEERLEVRLFHRSTRSVTLTAEGALFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++   ++EL ++   P GKLRI  ++ L   L+   L  F+  YPDI++ +   
Sbjct: 69  CRRILAEIAAAELELADTRAAPRGKLRI--SLPLVSGLMMPVLTAFMHRYPDIELDVDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL--- 186
           ++ +DI  +  D  +R  +P   S L+ R+L    +   A+P YLK    P    +L   
Sbjct: 127 DRLVDIVEEGFDAVVRTGEP-ADSRLVSRRLGVFELVLVASPDYLKRRGVPEKPADLLGH 185

Query: 187 --DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              +H   T G   P  +      A  + P      + +  N+  +++Q    G GIA L
Sbjct: 186 ACLQHKFPTTGRFEPWPLRLLPGEALPELP------ATMICNTTEALVQVAQAGLGIACL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD++V +   +  L R++E       T    +P +     KL+ F +F+
Sbjct: 240 PDFMVHEALQSGELRRVLESYTEHQGTFRVIWPSSKYLAPKLRVFIDFL 288


>gi|215485408|ref|YP_002327839.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215263480|emb|CAS07806.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 297

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  I  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLACSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275


>gi|296161687|ref|ZP_06844490.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295888001|gb|EFG67816.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 339

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 18/295 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R+F +VA++GSF+  A  L+L+  ++SR +S LE  + ++L +R +R +TLTEQG   
Sbjct: 21  SMRIFTLVAQAGSFSAVARSLNLTTGAVSRAVSELEERLKVRLLHRTSRRVTLTEQGKIY 80

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +   +   + E + +   P G LR+A    +GQ  +     E+  LYP++ +QL
Sbjct: 81  SRSALRILADVADAEGEARSAHETPEGVLRVALNEAVGQEWVMLAAGEYRKLYPNVAVQL 140

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +  D+    AD A+     +  S L+ R L T      A+P YL+  R P  ++ L
Sbjct: 141 KSFVQPPDLFSGIADVALISASSLADSDLVCRVLGTTRNILCASPAYLREHRAPRELRGL 200

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H  +     +P  +  ++W     +  G  P    L V S  S++     G GI ++P
Sbjct: 201 KSHAGLVAD--VPG-LPSYDWFFDRTQDDGALPMSGKLIVTSVDSLICAMRQGMGIGMVP 257

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              V     + +L+R++      S  +Y  YP            R F+  K R W
Sbjct: 258 AIAVAGGLRDGSLLRVLPAHTGGSMNIYALYPS-----------RRFVDAKIRTW 301


>gi|262194884|ref|YP_003266093.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262078231|gb|ACY14200.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 311

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 18/297 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   + VF  V +  +F  AA  L LS+S++S++++ LE  +G +L  R  R L LT+ G
Sbjct: 8   DPGAILVFVEVVKQQNFRAAARALGLSKSTVSQRVADLEEHLGARLLTRTTRSLKLTDIG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  HR  +     L   +  +     +PSG+LR+   ++LG +LL   L  +   YP+++
Sbjct: 68  ASFHREVAPALDALRNAEALVGTLQARPSGRLRLTAPVELGHDLLGSVLGRYATQYPEVE 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLS 182
           I ++L ++ +++  +  D AIR+  P+  S+L+ R+L +   +   A+P YL     P +
Sbjct: 128 IDVVLTDRMVNLVEEGFDLAIRV-GPLADSNLVSRRLRMPQELCTVASPRYLAQRGTPKT 186

Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVL 237
            ++L  H  L+  G   P       W   VD   G+ R       + VNS+  + +  + 
Sbjct: 187 PRDLAAHRCLVMTGAQTPSA-----WRYRVD---GKERAFSVTPHIAVNSFTVLREVALA 238

Query: 238 GSGIALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +GIA +P  Y   D     L R++             YP A   +  L+A  + + 
Sbjct: 239 DAGIARMPLRYAEGDIAAKRLRRVLARYAPQGRATLVVYPPARHISPALRAMVDLLV 295


>gi|50120417|ref|YP_049584.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610943|emb|CAG74388.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 300

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 10/289 (3%)

Query: 5   WDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +++L      AR+G   S+T AA  L +S S+IS+ I  LE  +G+ LF R  R L LT 
Sbjct: 7   FERLTGLIAFARAGALGSYTAAARSLSVSPSAISKSIQRLEQHLGVTLFTRTTRSLVLTA 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +LH     +    E  +   + S  +PSG LRIA +  +G +++   L  F  L+P 
Sbjct: 67  EGRELHERAIRLLLDAEEIEQVAKRSRAEPSGTLRIAASFPIGLHMIAPVLPTFCALHPK 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ I I  +  D AIRL   +  S+L+ R+L    +  YA+P YL  C  P 
Sbjct: 127 VSIDLRLSDRVISIIDERIDIAIRLGD-LADSNLLSRRLSPYKLCCYASPEYLATCPPPR 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              EL  H  +          + F W   V +R I     S + V++  +++     G+G
Sbjct: 186 HPNELMVHKTVNLR--YQNTGQVFRWPFRVGEREIEIVPPSNIIVDASEAVIAAVSAGAG 243

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I +   ++         L+ ++ D       +   + E+ ++   ++AF
Sbjct: 244 IGMATSFMTASLVRKKALIPVLSDFAIERHNISAVWHESRRSNPAVRAF 292


>gi|296103659|ref|YP_003613805.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058118|gb|ADF62856.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 310

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 140/296 (47%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + ++L +R  R L++T  G+
Sbjct: 4   FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVRLLHRTTRKLSVTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPDIQ 
Sbjct: 64  VYYERVIRLLADMEDAENSLSSAAITPRGRLRVDVPSPLARLILVPALPAFHARYPDIQF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  D  DC +R  + I   SLI R +  + +  YAAP YL+    P   +
Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGE-ITDQSLIARHVGDLQIGVYAAPSYLERLGPPSHPR 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H  + F     G + P  +   +    +    G   ++    N+Y+   +  + 
Sbjct: 183 ELENTDHRRVGFLSSRTGKIDPLVLRSESERIEI---TGSYVLAVDDGNAYI---EAGLA 236

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  LP Y+    +    L+ + E        +Y  +P       +L+ F ++I
Sbjct: 237 GLGVIALPVYMAAAHQARGALIPLFEHWRIAPMPLYLAFPPNRHVNARLRVFIDWI 292


>gi|149187221|ref|ZP_01865519.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148838757|gb|EDL55696.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 296

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 146/310 (47%), Gaps = 41/310 (13%)

Query: 3   FDWDK-LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +L+ + S+IS+++  LE  +G++L  R  R +T TE
Sbjct: 1   MDWISCINTYIRVVEEGSFNGAARRLNTTSSAISKRVHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++ + +   + ++   E +  +  P+G L+I  TI +G   L   L +FL  YPD
Sbjct: 61  AGALFYQRSKDSLDRFQSIIDETRSVNETPAGLLKIGATIAVGSKFLVQYLNDFLTQYPD 120

Query: 122 IQIQLI------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           I+IQL       L + ++D+ +       R  + + S S+ Q  L    +  YAAP Y++
Sbjct: 121 IRIQLTTTIPGQLPDTNLDVFIS------RELETLNSLSMRQTSLFEQRIGFYAAPSYIR 174

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---------VN 226
               P SI EL +HN++ +G                +RP  E +IS  Q           
Sbjct: 175 EFGAPQSIDELKQHNILIWG----------------ERPQREYKISKTQRVMLSGNFATT 218

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           +  ++      G G+ +  D ++K++     LVR++ ++     TVY  YP+      + 
Sbjct: 219 NPEALFYAAKNGMGVLISNDVMIKEDVKSGALVRVLPEIQALDSTVYAYYPKLDYEHTRT 278

Query: 284 KAFRNFIFLK 293
           K F ++I ++
Sbjct: 279 KLFLDYIKMR 288


>gi|50085788|ref|YP_047298.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531764|emb|CAG69476.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 295

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 121/249 (48%), Gaps = 7/249 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V +  SF  AA++L++  S++SR+I  LE E+G++L +R  R + LTE G  
Sbjct: 5   NDMALFVEVCKVMSFRKAADKLNMPSSTLSRRIGHLEKEIGLRLLHRTTRKVELTEAGQV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      +L E   KPSG LRI+  +D G  +L   L EF  LYP+I  +
Sbjct: 65  YFERCKPIVSEALLAHEQLGEMLSKPSGLLRISLPVDFGVMILAPLLTEFAELYPEINFE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  K +D+     D AIR+  P   S+LI  KL+      YA+  YL+    P    +
Sbjct: 125 IDLTPKLVDLVKQNIDVAIRMGNP-PDSNLIGHKLMQFRGQLYASADYLEKNGHPNHPSD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  ++F + +   +   N   TVD  I         +NS   + +  +LG GI   P
Sbjct: 184 LVHHQCLSFPNNLLWKLNHKN--ETVDVKI----TGRFMLNSVGMMRKLSILGQGIIFTP 237

Query: 246 DYIVKDNPN 254
             IV D+ N
Sbjct: 238 RAIVYDDIN 246


>gi|33598053|ref|NP_885696.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33602945|ref|NP_890505.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33568576|emb|CAE34334.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33574482|emb|CAE38820.1| LysR family transcriptional regulator [Bordetella parapertussis]
          Length = 297

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 138/283 (48%), Gaps = 9/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF  AA++   ++S ++RQ++ LE + G++L  R  R L+LT+ G   +
Sbjct: 1   MQTFARVVELGSFAAAADKTDQARSVVTRQVAFLERKYGVRLLNRTTRKLSLTDAGRAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +L    + LQ    +P+G+LRI+  +  G   L   + ++LL YP++ I L 
Sbjct: 61  DRIRPVLAELAELDLALQAQGSQPAGRLRISAPVSFGVLHLGPAIADYLLRYPEVVIDLD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D A+R+  P+  SSL+ R L    + A AAP YL+    P   ++L 
Sbjct: 121 LNDRVVDLVEEGYDVAVRI-GPLVDSSLVARPLAPQQLVACAAPAYLERYGAPAQPEDLR 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +           +W    D      R++   + N+   +    + G GI L P+
Sbjct: 180 RHRCLHYA----YASTGNDWHFEKDGQTHVVRVNATFRANNGDVLRTAALAGHGIILQPE 235

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++V ++     L  ++ D      T+   YP     + K+++F
Sbjct: 236 FLVGEDLRAGRLTALLTDYRHSLITMMAVYPHRRFLSPKVRSF 278


>gi|307727134|ref|YP_003910347.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587659|gb|ADN61056.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 305

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 139/290 (47%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S +++SR ++ LE  +G +LF R +R L++TE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARAMGVSVATVSRGVARLEDRLGARLFNRTSRQLSVTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     ++Y + E  +   +E SV+P G +R+A  +  G   +   L  F  +YP + 
Sbjct: 66  RTICEKAGDIYRQAEEAESAARELSVQPRGLVRLAVPMSFGLRWVAPLLPAFFRIYPQVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D A+R+   +  SSL+ R+L  +  +  A+P YL+    P   
Sbjct: 126 IDLHLSDASVDLVAEGFDAALRIAA-LPDSSLVARRLCAVTQYLVASPQYLEREGWPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL     +++       +  F   A  + P+       L+V +  +++   + G  I  
Sbjct: 185 RELVDRPCLSYAYRAGSEVWRFRNDAGEEEPVVP--TGPLRVTNSEALLPTLLDGLAIGE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+++  +   +  L  I+ D       +YF  P A     K++   ++ 
Sbjct: 243 LPEFMAGEYLADGRLQAILTDWSLTKGGLYFVTPSARARPAKVRVLSDYF 292


>gi|218677018|ref|YP_002395837.1| Transcriptional regulator LysR family [Vibrio splendidus LGP32]
 gi|218325286|emb|CAV27288.1| Transcriptional regulator LysR family [Vibrio splendidus LGP32]
          Length = 303

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 138/287 (48%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++AR G+FT AAE L +S+S +SRQ+S LE ++G+ LF R  R L LT  G  L+
Sbjct: 12  IRSFVLIARLGNFTKAAEDLDVSRSHVSRQVSSLEKQMGVTLFIRTTRTLRLTHAGQDLY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++   I   +   +  G +++      LG+ ++   + EF+ LYPDI I L
Sbjct: 72  ARCEQALDNIDQALIAAVDDVEEVRGDIKVNCVGGYLGEVIIADLVNEFMQLYPDISISL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+   ++ +  I RKL+ I M   A+P Y     +P   ++L
Sbjct: 132 DFSSNRVDLIEDAFDIAFRM-GSLEDAGFIARKLLDIEMGTLASPDYFARKGKPSHPKDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +T    + K    F  L    + +       LQ  +   ++Q    G+GI  +P 
Sbjct: 191 IHHDCLTGS--VRKW--SFQALDDTKKTVDVHVTGRLQCKNGRVLVQGAKSGNGIIRVPT 246

Query: 247 -YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y +++  +  L+++ E+ + P       Y        +++ F +F+
Sbjct: 247 IYCLQELNDGQLLQVFEEWVVPKVDFSAIYHRDRYQPSRIRTFIDFV 293


>gi|165976613|ref|YP_001652206.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876714|gb|ABY69762.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 297

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 25/303 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           ++VF  VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+ G    
Sbjct: 7   IQVFLTVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTDAGEQAV 66

Query: 65  ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               K+  +TS +     T + EL+       G LRIA+    G   L   ++ FL  +P
Sbjct: 67  EYCKKMTELTSAIEQDFLTQRGELR-------GSLRIASNAAFGSTHLLNAIRTFLAKHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL      
Sbjct: 120 KLNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLARHGTI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S QEL  H  +   ++  K   ++ ++      + E   S L +N   +++ + +   G
Sbjct: 179 HSPQELANHRYLAHANVNRK---EWTFIKDEQETVLE-LTSQLTINDTGALLNFTLADGG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           IA+LP Y ++    N  L  ++ D   P++ VY  YP   +    +++F +F+   F   
Sbjct: 235 IAMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLPKTVRSFVDFLVEEFEGK 294

Query: 295 RDW 297
            DW
Sbjct: 295 GDW 297


>gi|21244486|ref|NP_644068.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21110154|gb|AAM38604.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 308

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 17/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AAE LH+S++S ++ +  LE  + +KL  R  R + +T  G+
Sbjct: 4   FDAMRAFARVVETGSFTKAAEHLHMSRASATQLVQQLEARLRVKLLNRTTRRVQVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  ++  P G+LR+     L   +L   L  F   YP IQ+
Sbjct: 64  AYYERVLRLLADMDDAETSLSVAATSPRGRLRVDVPSPLALLILMPALPAFHARYPQIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC IR    I   SLI R +  +    YAAP YL+    P    
Sbjct: 124 DMGVSDRRVDLIGENVDCVIR-GGTITDQSLIARHVGDLQAGVYAAPDYLQRLGTPTHPT 182

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+  +H  + F        +P  M+  +    V    G   ++    N+YL+     + 
Sbjct: 183 ELENTRHRCVGFMRWGSSTTVPYVMQRGDEAVRVH---GRHVVAADDGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+  LP Y+      +  LV I +D    +  +   +P     + KL+ F +++ 
Sbjct: 237 GMGVLWLPVYMANAHVASGELVPIFQDWQLEAMPLSIAFPPNRHVSAKLRVFIDWVI 293


>gi|186470421|ref|YP_001861739.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196730|gb|ACC74693.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 309

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 13/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  VA + SF  AA QL ++ S ++ +I  LE  V   LF+R  R + L+E G   
Sbjct: 6   SIEAFVRVAETSSFAEAARQLGVTSSVVTNRIQQLEKFVDAPLFHRSTRHVRLSEVGEAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R  +EV  ++     +++E    P+G+LRI             +L EF   YP IQ+ +
Sbjct: 66  YRECAEVVGRVNELTDQMRELRATPTGRLRIQMLPGFALGHFGASLAEFNRRYPGIQLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I++++ +D   +  D A ++  PI S SLI+R+L  +     AAP YL+    P   ++L
Sbjct: 126 IVNDRVVDPIEEGFDVAFQIFPPI-SESLIERRLFPVRRLFCAAPSYLREYGTPQHPRDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +H    +     +      W  T    + E  +   ++ NS   +  Y + G G+  LP
Sbjct: 185 LQHTTALYSGYPSRN----RWTMTRGDEVVEMELPGMIRSNSVHLLRDYALTGGGVVCLP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +      + +LV I+ D           YP   +   K+KA   F+     DW
Sbjct: 241 TLVASAALLDGSLVPILTDYALSPLNFAAVYPATQRQALKVKALVEFL----ADW 291


>gi|33594327|ref|NP_881971.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33564402|emb|CAE43709.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|332383738|gb|AEE68585.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 303

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 138/283 (48%), Gaps = 9/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF  AA++   ++S ++RQ++ LE + G++L  R  R L+LT+ G   +
Sbjct: 7   MQTFARVVELGSFAAAADKTDQARSVVTRQVAFLERKYGVRLLNRTTRKLSLTDAGRAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +L    + LQ    +P+G+LRI+  +  G   L   + ++LL YP++ I L 
Sbjct: 67  DRIRPVLAELAELDLALQAQGSQPAGRLRISAPVSFGVLHLGPAIADYLLRYPEVVIDLD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D A+R+  P+  SSL+ R L    + A AAP YL+    P   ++L 
Sbjct: 127 LNDRVVDLVEEGYDVAVRI-GPLVDSSLVARPLAPQQLVACAAPAYLERYGAPAQPEDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +           +W    D      R+ +  + N+   +    + G GI L P+
Sbjct: 186 RHRCLHYA----YASTGNDWHFEKDGQTHVVRVNATFRANNGDVLRTAALAGHGIILQPE 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++V ++     L  ++ D      T+   YP     + K+++F
Sbjct: 242 FLVGEDLRAGRLTALLTDYRHSLITMMAVYPHRRFLSPKVRSF 284


>gi|254520898|ref|ZP_05132953.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219718489|gb|EED37014.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 293

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 23/292 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  V     F+ AA+ L LS + ++RQ++ LE  +  +L +R  R ++ T  G+ 
Sbjct: 5   EAMRVFVAVVERNGFSAAAQALDLSTAGVTRQVAALEKRLSTRLLHRTTRRVSPTSAGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  + +  +  +   +++PSG LRI   +  G   L   L  +   +P +++ 
Sbjct: 65  YYAQCVRLLAEFDALEASIGAQALEPSGTLRINAPVSWGIARLGPLLASYRERFPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L ++ +D+  +  D AIR+ R+P  S +LI R+L    +   AAP YL     P + Q
Sbjct: 125 LALSDRLVDMVEEGYDVAIRITREP--SPALIARRLGQSRVSLCAAPSYLAARGTPQTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           EL  H           C+    W A     +  P GE ++   S L  N+   + +  + 
Sbjct: 183 ELPAH----------ACLSYSYWAAGDHWPLQGPGGEVKVAVSSLLHANNGDVLREAAIA 232

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G G+ L PD++++D   N  LVR++ +       ++  Y        K+++F
Sbjct: 233 GMGVILQPDFLLEDALANGRLVRVLPEWEASPIGIFAVYTSRSHLAPKVRSF 284


>gi|161523821|ref|YP_001578833.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351418|ref|YP_001947046.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341250|gb|ABX14336.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335440|dbj|BAG44510.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 322

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 140/292 (47%), Gaps = 19/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q+   KP+G LR+     LG+ L+  +L  F   YPDI + L 
Sbjct: 67  EHCVKILSEIAEADASFQKG--KPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPDITLDLG 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     AAP YL    EP  I +L 
Sbjct: 125 LSDRPVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLRRVTCAAPDYLARHGEPREIADLA 183

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            H  + F     G  +P       W+  +D +P+     + + VN   + +   + G G+
Sbjct: 184 GHYAVNFRATQGGRAVP-------WVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFGM 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                ++V  N    +LV ++ D       +   YP     + K++ F ++I
Sbjct: 237 IQPTLFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWI 288


>gi|297579905|ref|ZP_06941832.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535551|gb|EFH74385.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 301

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEDLEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 AEHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRSALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|218661983|ref|ZP_03517913.1| LysR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 297

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 20/302 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+ + L +F     SGSFT AA  L + +S++S++++ LE  +G++L  R +R   LTE 
Sbjct: 4   FNLNDLHLFVQAVDSGSFTAAARHLGMPKSTVSKRVAELERRLGVRLIQRTSRSFALTEL 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +       + E  +  ++    +P+G +R+  ++   Q  L  +L      YP +
Sbjct: 64  GREFFQHAQASVIEAEMAEGIVRRHLAEPAGSVRLTASVPTAQFTLTEHLPALAARYPKL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ + + ++ +DI  +  D A+R  R P+  S+L+QRKL +      A+P Y+    +P 
Sbjct: 124 RLSVHVTDRFVDIVQEGFDIALRSHRAPLPDSALVQRKLASHPFFILASPDYISAHGQPR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVL 237
             +EL +H  I         + +  W  T D   G+  +  LQ     +    +M+  V 
Sbjct: 184 RPEELAEHATIM------TSLTENQWRLTSDG--GDEAVVTLQSVMAADEPYVLMETAVA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLK 293
           G GI  LP  + +       LVR++ D    S       P      G+L A R  + FL+
Sbjct: 236 GLGITCLPTSVCRKALAEGRLVRVLPDWTAGSIETTILMPH---RRGQLPAVRAVVDFLE 292

Query: 294 AR 295
            R
Sbjct: 293 ER 294


>gi|182678439|ref|YP_001832585.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634322|gb|ACB95096.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 313

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 133/280 (47%), Gaps = 3/280 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ +R F  V R GS + AA  L L+Q ++   IS LE  +G  LF R  +GLT T+ 
Sbjct: 5   IDWELIRSFLAVLRQGSLSAAARSLGLTQPTLGNHISQLEAFLGASLFTRSRQGLTPTQA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              +      +              +    G +RI  +  +G  +L   L++F+  YP+I
Sbjct: 65  ALAILPEAEAMDAAARAFARRASGETDAMRGAVRITASEVMGMEVLPLLLRDFMRTYPEI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L N+  D+    AD A+R+ +P Q  +L+ R +  I + AYA   YL+    P +
Sbjct: 125 VVELSLTNRTEDLLRRDADIAVRMARPAQ-GALLTRHIGRIGLGAYAHRDYLETRSCPRA 183

Query: 183 IQELDKHNLITFG-DLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           I +L  H LI    D +P    E  + +    R I +     L+ +++L+ +     G G
Sbjct: 184 IDDLKSHVLIGLDRDRLPSVEGEPDDDVGGELRSILQNWPCTLRTDNHLAHLGAIRAGLG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
           + +    + + +P+LV I+ ++I P+   +    E LK +
Sbjct: 244 LGICQHGVARRDPDLVPILPEIIKPALDCWLAMHEDLKGS 283


>gi|152984517|ref|YP_001348180.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959675|gb|ABR81700.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 304

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 22/298 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  +D +  F  VA   S T AAE++ LS+S IS+++S LE  +G++L YR  R +  T
Sbjct: 1   MSLRFDDIEAFLNVAELNSVTSAAERMSLSKSVISKRVSDLEKRLGVRLLYRTTRNVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           E G   ++       +L      + L+E+ +   G+LRI T +  G   L   + +F+  
Sbjct: 61  EAGHFFYKAAKASLQELNNAAEIVALRENDL--CGELRIVTPMSFGTLWLSPIIADFMSQ 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P ++I L +D++  D   +  D +IR+ + +  SSLI R L         +P Y +   
Sbjct: 119 HPRLEIVLQMDDRLTDFEKEGYDLSIRVTR-LDDSSLIARPLANSQRVVCCSPDYAQRHG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              ++++L +H  + + +  P  +  F      D+P           N+  ++    + G
Sbjct: 178 SVETLEQLMQHECLGYNNASPSQVWTFEPAYPGDKPRAISPRGRFNSNNGQAMRDAALRG 237

Query: 239 SGIALLPDYIVKDN----------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+ALLP +IV ++          P L R ++DVI      Y  Y  A   + K+KAF
Sbjct: 238 QGLALLPLFIVAEDLGSGRLVDAAPGL-RPLDDVI------YAMYSRAAAMSPKVKAF 288


>gi|313496427|gb|ADR57793.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 295

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 10/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEQSLGTALFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ + ++ P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  LI RKL    +  YA+  YL        
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQDYLDRAPPLRH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ I + D +    E    L  ++     P +   +  S ++       G GIA
Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRAPNV-VFRSTSVIAQQAAARAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +LP+Y+ + +P LVR++  + I  S+  + C    L  + +L+   +++ 
Sbjct: 235 VLPNYMARHDPTLVRVLPGETIQRSY--WICTRRELHKSVRLRVVWDYLL 282


>gi|300723905|ref|YP_003713216.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
 gi|297630433|emb|CBJ91098.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
          Length = 313

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 140/297 (47%), Gaps = 13/297 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  +   GS   AAE+L +S++ +SR ++ +E   GI+L +R  R ++LT  G   ++
Sbjct: 8   QVFVTIVEQGSLIAAAERLDMSRAMVSRYLAEMEQWAGIRLLHRTTRKISLTSAGESAYQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            + ++    E   ++    +    G LR++ +  LG + L   + EF  +YP I + L +
Sbjct: 68  RSLKLMELAEEIPVQQFSEAQTLRGLLRVSCSQSLGISALSAAIPEFTRIYPQIAVNLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +NK I++  +  D AIR+   ++  +LI R L T +    AAP YL     P +  +L  
Sbjct: 128 NNKAINLIEERIDLAIRITNNLE-PNLIARPLSTCYSVVCAAPSYLAGKSIPQNPADLAS 186

Query: 189 HNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           HN +T+ +   K +    WL          P    L  N    +M+  +LG+GIA+ P Y
Sbjct: 187 HNCLTY-NFFGKSL----WLFEKQHEQYSVPVSGTLSANESTVLMEAALLGAGIAMQPYY 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298
            V     +  LV ++ D    +  +Y  Y         L+A  +F+   F  +  W+
Sbjct: 242 SVSPYLISGQLVELLPDYQPQAMGIYAIYSSRQNMPVILRALLDFLVDWFATSSHWQ 298


>gi|238909680|ref|ZP_04653517.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 303

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|325529857|gb|EGD06698.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 303

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 102/188 (54%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA SG+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G +  
Sbjct: 11  LHVFMSVATSGNFTRAAAALGLTPAAVSLAIGQLESELNVKLFNRSTRGVSLTEAGQRYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
           R T   Y ++   + EL++   +P G LR+ T + L + L+    L  F   YP +++++
Sbjct: 71  RQTEAAYRQIVQARDELKDVRGEPGGLLRV-TALPLARTLVIAPILASFHQRYPKVRLEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +N+ +DI+ D  D  IRL   +Q   +  R    +     A+P Y+     P SI EL
Sbjct: 130 RYENELVDIAKDGFDAGIRLADRLQPGMIGVRIAPELTCALVASPDYVARHGAPTSIAEL 189

Query: 187 DKHNLITF 194
           ++H  + F
Sbjct: 190 ERHACVRF 197


>gi|241205186|ref|YP_002976282.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859076|gb|ACS56743.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 299

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 133/275 (48%), Gaps = 6/275 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L  F  VAR  SFT AA +L +SQS++S+ + GLE ++G++L  R  R ++ T+ G
Sbjct: 6   NFNELVAFLTVARERSFTRAAAKLGVSQSALSQTVRGLEEKLGLRLLTRTTRSVSPTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + +++     L E   +P+G +RI        ++L   L  FL  +PDI 
Sbjct: 66  ERLLERVGPRFEEIQFEIAALSEMRERPAGTIRITAGEHPAISVLAPALARFLPDHPDIN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+D    DI  +  D  IRL + +    +  R    I M    AP Y ++   P   
Sbjct: 126 VEVIVDYGLTDIVAERYDAGIRLGEHLAKDMIAVRIGPEICMAVVGAPSYFEHHPRPDIP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242
           Q+L  HN I     +P     + W    D      R+    V + +++    VL G G+A
Sbjct: 186 QDLTAHNCINM--RLPTHGTIYPWEFEKDGRELRVRVEGQTVFNNIAMRIGAVLDGLGLA 243

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            +P+  V+   ++  L+RI+ED   P    +  YP
Sbjct: 244 YMPEDQVQSYIEDGRLIRILEDWCQPFPGYHLYYP 278


>gi|16119619|ref|NP_396325.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15162187|gb|AAK90766.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 301

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 134/286 (46%), Gaps = 12/286 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA  GS + AA  L LS+S +S +++ LE  +G  L +R  R +++TE G  
Sbjct: 4   DGIASFVAVAEEGSISGAARTLRLSKSVVSERLAELERSLGATLLHRTTRRVSVTEDGVA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++     +L E      G +RIA  +  G+  L   L  FL   PDI++ 
Sbjct: 64  FLERAKRILREVSEAAADLAERRGTLGGPIRIAAPVTFGRMHLGPALYPFLTANPDIEMS 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD++ +DI+ D  D  +R    +  S L+  +L        A+  YL     P +  E
Sbjct: 124 LELDDRRVDIASDVYDGVVR-HGAVDDSRLMVWRLAPSRRVLVASEAYLAVNGTPATTTE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + + +   + + D+ +LA     I   RI   +VN+   +    + G GIALLP
Sbjct: 183 LAAHKGLFYTN---RGVGDWRFLAPGGIEIVRARIG-FRVNNGDMLRDAAIAGLGIALLP 238

Query: 246 DYIVKDNPNL----VRIMEDVITPSFT-VYFCYPEALKNTGKLKAF 286
            +I    P++    +RI++  + P    V+  +PE  + + KL+A 
Sbjct: 239 LFIA--GPDIRDGKLRIVDVGVRPDAEFVFLAHPEGRRPSAKLRAL 282


>gi|317053436|ref|YP_004119203.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953175|gb|ADU72647.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 305

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 149/304 (49%), Gaps = 14/304 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S  ++SR ++ LE  +G +LF R +R L LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARVMGVSVPTVSRAVARLEERLGGRLFNRTSRQLALTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    SE+Y + E  + E  + +V+P G++R+A  +  G   +   + E +  +P++ 
Sbjct: 66  QSMVTKASEMYRQAEEMESEAHDLAVQPRGQVRLAVPMSFGLRWVAPLMPELIRQFPELS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+  +  D A+R+   +  SSL+ R+L  +  +  A+P YL     P   
Sbjct: 126 VDLHLSDASVDLIAEGFDAALRIAS-LPDSSLVARRLCAVTQYLVASPAYLAQHGMPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +EL      ++       +  F+  + +     P G      L+V +  +++   + G G
Sbjct: 185 RELSARQCFSYAYRARSQVWRFSHSSGLQEDIVPNGP-----LRVTNSDALLPPLLAGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           IA LP++I  +   +  LV ++++       +YF  P +     K+KA  +F    L   
Sbjct: 240 IAELPEFIAAEYLKDGRLVHLLDEWSMTQGGLYFVTPTSRSRPLKVKALSDFFAKHLSQP 299

Query: 296 DWKF 299
           +W++
Sbjct: 300 EWRW 303


>gi|290473336|ref|YP_003466202.1| transcriptional regulator, LysR family [Xenorhabdus bovienii
           SS-2004]
 gi|289172635|emb|CBJ79404.1| Transcriptional regulator, LysR family [Xenorhabdus bovienii
           SS-2004]
          Length = 296

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 145/312 (46%), Gaps = 35/312 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   ++++ F  V   GSFT AAE+L +S++  S  +  LE  + I L  R++RG+ LT
Sbjct: 2   MNNQLNRIQTFIAVVDCGSFTRAAERLLISKAMTSIHVKRLEESLNIPLLIRNSRGVALT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L+   SE++  ++++   + E  +  SG L I +TI+ G   L   + EF  ++P
Sbjct: 62  EAGQFLYNEFSEIFINIQSSLDNVAEQYLSLSGTLHITSTIEFGDRFLLPLIGEFCKIHP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +     +   D+  D  D AIRL   ++ SSL  RK+    ++  A+P +       
Sbjct: 122 QLNVSYDAGSALNDLISDRLDLAIRL-GVLRDSSLKSRKIADFKIYMVASPDW------- 173

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---------PRISC-----LQVN 226
                L+K+ L T  DL     +D +W+A  +              P I          N
Sbjct: 174 -----LEKNKLETVNDL-----KDVDWIANSNLQTPTHWELSHSTLPSIDIRAKARFNAN 223

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           S  SI    + G G+ +LP+++++    + NLVR+  +   P   V   YP   +   K 
Sbjct: 224 SSTSIKTMAIAGFGVTVLPEWMIETELQSGNLVRLFPEYSLPKQPVTIVYPNGHQIQRKC 283

Query: 284 KAFRNFIFLKAR 295
           + F +++  K +
Sbjct: 284 RVFIDYLIDKLK 295


>gi|219871762|ref|YP_002476137.1| LysR family transcriptional regulator [Haemophilus parasuis SH0165]
 gi|219691966|gb|ACL33189.1| LysR family transcriptional regulator [Haemophilus parasuis SH0165]
          Length = 296

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 137/282 (48%), Gaps = 32/282 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           ++VF  VA +GSFT  AE+L +S+  ISR ++ +E  +  +LF R  R + LT+ G    
Sbjct: 7   IKVFMTVAETGSFTATAERLEISKPMISRYVALMEEWLNARLFQRSTRKVALTDAGEQAV 66

Query: 65  ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               ++  +T+E+  ++   Q EL+       G LR+ ++   G   L   +  FL L+P
Sbjct: 67  LFCQRIANLTAEMEQEMMAQQGELR-------GALRVTSSQTFGAYHLVQMVNRFLQLHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQL+L+++ +D+  +  D AIR+       + I RKL   H    A P YL     P
Sbjct: 120 KLNIQLLLNDQTMDLISERIDLAIRITN-TPDPNFIARKLADCHSLLVATPEYLTKFGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYC 235
              ++L +H+ ++  ++  K      W  T     GE  +     S    N   +++   
Sbjct: 179 TQPEDLYQHHYLSHHNINRKA-----WKCTQ----GEQEVLLDLNSRFTTNDTQTLLNSV 229

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           + G GI++LP Y+++       L  ++ D   P+F++Y  YP
Sbjct: 230 LDGYGISMLPKYMLEPELQQGKLQAVLTDWQLPTFSIYAMYP 271


>gi|56414861|ref|YP_151936.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363789|ref|YP_002143426.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129118|gb|AAV78624.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095266|emb|CAR60819.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 303

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|77457466|ref|YP_346971.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381469|gb|ABA72982.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 323

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 131/273 (47%), Gaps = 9/273 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F V+  +GSFT AA+QL  S+  +S++IS LE    + L  R  R L+LT  G+ 
Sbjct: 26  DDLAAFAVLIEAGSFTLAAQQLGCSKGQLSKRISQLEARFSVVLLQRTTRRLSLTAAGAA 85

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  ++E  +  L       +G +R+   + LG+    G L +F   YP++QI+
Sbjct: 86  LLPQAQALVVQVERARQALARLKDDMAGPVRMTVPVSLGETFFDGLLLDFSQKYPEVQIE 145

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+N   D+S D  D AIR  +      L+ + L+       A+P YL+   EPL+ Q 
Sbjct: 146 LELNNSYRDLSRDSFDLAIRT-EVANDERLVAKPLLAWQEMTCASPEYLERFGEPLTPQA 204

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244
           L +H  +    L         WL      +   R+S    +++ ++++   L G+GIA L
Sbjct: 205 LAEHRCL----LNSHYSGREEWLYHQQHELLRVRVSGPFASNHYNLLKKAALAGAGIARL 260

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           P Y+++    +  L  ++ D  T    +Y  +P
Sbjct: 261 PSYLLQAELADGRLRWLLRDFQTRRMPMYLVHP 293


>gi|221215841|ref|ZP_03588799.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221164306|gb|EED96794.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 304

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 138/281 (49%), Gaps = 13/281 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA +G FT AAE+L+L+ S++S+ ++ LE  +G+ LF R  R L LT+ G   +   
Sbjct: 15  FVCVADAGGFTAAAERLNLTNSAVSKSVARLERRLGVVLFERTTRSLVLTDAGRAFYETC 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  +L   +  L     +P G +RIA     G+  +   L  F   YPD++  L+  +
Sbjct: 75  TRILAELAEAEAVLAAQKREPVGTVRIALPASFGRLCVVPVLVRFSEQYPDVRPHLLFTD 134

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDKH 189
           + +D++ +  D A+R+  P      + R+L+      + AAP YL+    P +I +L +H
Sbjct: 135 RFVDLAEEGIDLAVRIGGPPGLPPSLGRRLLGRERLIFCAAPAYLEKNGIPQTIDDLQEH 194

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245
             I +G   P  ++     A  D  + +    PRI      + L+ ++    G G+A L 
Sbjct: 195 ACIVYGR--PDGVQSLWSYAAADGRVEQCVVRPRIVAGDAEAQLAFVRA---GLGVAQLA 249

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            ++V+D+     LV I+++  T    +   +P A + T K+
Sbjct: 250 TWLVRDDLKAGRLVAILDEAATDGLPLSLIWPVARQLTPKI 290


>gi|26986800|ref|NP_742225.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24981395|gb|AAN65689.1|AE016195_10 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 295

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 140/292 (47%), Gaps = 14/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEQSLGTALFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ + ++ P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  LI RKL    +  YA+  YL        
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQAYLDRAPPLRH 179

Query: 183 IQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++L +H+ I + D  L  + +   N    V      P +   +  S ++       G G
Sbjct: 180 REDLARHSWIGYVDDLLFSQELLFLNSFCRV------PNV-VFRSTSVIAQQAAARAGLG 232

Query: 241 IALLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           IA+LP+Y+ + +P LVR++  + I  S+  + C    L  + +L+   +++ 
Sbjct: 233 IAVLPNYMARHDPTLVRVLPGETIQRSY--WICTRRELHKSVRLRVVWDYLL 282


>gi|120537045|ref|YP_957102.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8]
 gi|120326880|gb|ABM21187.1| transcriptional regulator, LysR family [Marinobacter aquaeolei VT8]
          Length = 307

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 21/291 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V  +GSF+  A +L+++ S IS++I  LE ++G++L +R  RG  LT  G    
Sbjct: 15  MRMFVRVVDAGSFSRVANELNVTTSMISKEIGRLEEDLGVRLLHRSTRGQQLTSIGEGYL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+  +++     +Q     P GKLRI   + LG   L      ++  YPD+++ + 
Sbjct: 75  KRCRELLVQVDDADAYVQHMQENPRGKLRINAPMALGITDLSQLFSAYMKQYPDVELDIQ 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+     D   R    +  S+ + + LV+      A+  YL++      +++L 
Sbjct: 135 LGDESLDLIEHGFDLGFRASSQMLDSNYVGKPLVSFTYKVCASASYLESHPPIREVEDLA 194

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            HN   +     G+  P                G      L+VNS L + Q    G GI 
Sbjct: 195 AHNCFVYSYFKSGNFWPLAQ-------------GITVAGSLKVNSTLFMKQVIEDGLGIG 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++ ++      LV ++ +V  P  T+Y  YP  L    KL +   F+
Sbjct: 242 FLPSFVAREGIEQGKLVEVLPEVGRPDLTLYALYPNRLFTPPKLLSCIEFL 292


>gi|331645474|ref|ZP_08346578.1| transcriptional regulator, LysR family [Escherichia coli M605]
 gi|330910099|gb|EGH38609.1| putative LysR-like transcriptional regulator [Escherichia coli
           AA86]
 gi|331045636|gb|EGI17762.1| transcriptional regulator, LysR family [Escherichia coli M605]
          Length = 329

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G  L+ V 
Sbjct: 36  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 95

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 96  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155

Query: 131 KDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL +        I  S LI  KLVT+     A+P YLK    P + 
Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAIPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323


>gi|222083041|ref|YP_002542406.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221727720|gb|ACM30809.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 297

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 14/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR F  VA +G  T AA +L +S+S +SR++S LE E+G +L  R  RG +LTE 
Sbjct: 1   MDIEDLRTFVEVADAGGVTSAALRLGVSKSMVSRRLSRLEAELGAQLLARSTRGASLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G+      + V     + +I++   ++ P    SG+LRIA  +  G       L +  L 
Sbjct: 61  GATFRDYAARV-----SAEIDVARDTILPAGELSGRLRIAAPLSFGPTHFASVLADMALR 115

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P +QIQ    ++ +D+  +  DCAIR+   +Q S+L+ R++  ++    A+P Y+K   
Sbjct: 116 HPQLQIQTSYSDRFVDLIGEGFDCAIRVGT-LQDSNLMARRVGPLYGKYVASPAYIKAHG 174

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P + +EL  H  +  G    + M D + + T+ RP G  +          +     +  
Sbjct: 175 SPETPEELVTHQALMQGMETWQVM-DGDKILTI-RPQGRFKADNGAALVVAAAAGLGIAA 232

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
               L  DY+  D+  LV +M++   P   +Y   P     + K++     + 
Sbjct: 233 LPDGLTRDYL--DSGTLVTVMKNHPPPPAGIYVVRPPGQHPSRKVRVLTEMLI 283


>gi|162148452|ref|YP_001602913.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787029|emb|CAP56614.1| putative transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 294

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 137/294 (46%), Gaps = 17/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +RVF  V    SFT AA  L L +S+++  +  LE  +G++L  R  R ++ T  G+
Sbjct: 4   FDAMRVFTRVVERRSFTLAASDLGLPRSTVTDAVKRLEARLGVRLLQRTTRHVSPTLDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             HR    +   LE  +        +P G LR+     L ++ +   L +F+  YPDI++
Sbjct: 64  AYHRRCLALIADLEDAEAAF--GGARPRGMLRVDVHGTLARHFVLPRLPDFMAAYPDIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ +D+  +  DC +R+   +Q S ++ R++  +     AAP YL     P  + 
Sbjct: 122 TLSEGDRLVDLIREGIDCVLRVGD-LQDSDMVARRVAMLEEVTCAAPSYLARFGMPGDVD 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            LD H ++ F     G L+P      + L T+        +S + VN   S++    LG 
Sbjct: 181 ALDGHRMVGFRSSATGTLLPLEFMVGDSLRTIT------LLSPVAVNGAESLVAAARLGL 234

Query: 240 GIALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  +P Y +V+D     LV ++ D       V   YP   +   +++ F ++I
Sbjct: 235 GLVQVPRYHVVQDLGQGTLVVVLPDHPPSRTPVSLLYPRHRQVAPRVRVFIDWI 288


>gi|119468712|ref|ZP_01611764.1| putative transcriptional regulator with periplasmic binding domain
           (LysR family, YafC, YeaT) [Alteromonadales bacterium
           TW-7]
 gi|119447768|gb|EAW29034.1| putative transcriptional regulator with periplasmic binding domain
           (LysR family, YafC, YeaT) [Alteromonadales bacterium
           TW-7]
          Length = 304

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 134/265 (50%), Gaps = 6/265 (2%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V   GSF  AAE  ++ +S IS+QIS LE E+G++L  R  R  +LT  G+++ +   E+
Sbjct: 5   VVEQGSFAKAAELRNIDRSVISKQISRLEDELGVRLLNRTTRSFSLTAAGAEMIKKAGEL 64

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              L  T    +   ++P G L+I ++  +G+  LQ  L +F   +P ++++L LD++ +
Sbjct: 65  RELLGETVRMAENYHLEPRGVLKITSSTLIGRRYLQPVLNDFQKRFPQVEVELRLDDRLV 124

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           DI  +  D A R+ +P + SSLI RK+    +   AAP ++     P +++EL      +
Sbjct: 125 DIVSEGFDLAFRIGEP-KDSSLIARKIARNRLLIVAAPEFISTYGMPSTMEELADLPAAS 183

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD-- 251
           +     +  E  ++  +   P  +   S  + N   +++   + G+   + P +I+ D  
Sbjct: 184 YASNSMRV-ETVDYYNSSGEPCEQKIKSVYRANDAEALLMKAISGTAYFVAPAFIIGDEI 242

Query: 252 -NPNLVRIMEDVITPSFT-VYFCYP 274
               L+ I+ DV    ++ +Y  YP
Sbjct: 243 TEGKLIPILTDVKLMDYSAMYAVYP 267


>gi|56698313|ref|YP_168686.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56680050|gb|AAV96716.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 294

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 129/285 (45%), Gaps = 12/285 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ +R F   A +GS + AA +L L+Q ++SRQ++ LE ++G+ LF R  R L LT+ 
Sbjct: 7   LDWNHIRAFLKTAETGSLSAAARRLDLTQPTLSRQVAALEQDLGVMLFERIGRTLVLTDA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L   T  +    +   +     +    G++RI  +  +   +L   L+      P +
Sbjct: 67  GADLLEHTRAMGAAADRVALAASGQAQSIEGRVRITASDVMSAYVLPEALRRIRAQAPRL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I++I  N   D+    AD AIR  +P Q   LI R +     H YAA  YL     P++
Sbjct: 127 EIEVIAANDIRDLMRREADIAIRHVRPEQ-PDLIARLVREATAHFYAASGYLDRRGRPVT 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
             +L  H+ I FGD+     E    L     P+G P       L   S +    Y   G 
Sbjct: 186 KDDLATHDFIAFGDVT----EMLGHLT----PLGLPLTRANFRLGSQSGVVAWDYVRQGF 237

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           GIA + D +    P + R++  +    F V+      L  + +++
Sbjct: 238 GIAPMDDGVAAATPGVERVLPQMEPLLFPVWLTAHRELHTSRRIR 282


>gi|300024296|ref|YP_003756907.1| LysR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526117|gb|ADJ24586.1| transcriptional regulator, LysR family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 333

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 141/288 (48%), Gaps = 15/288 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LRVF  V    SFT AAE L + +S++S  I  LE  VG +L  R  R +  T  G   
Sbjct: 26  RLRVFVRVVDCKSFTKAAETLAIPRSTVSIAIKELEKLVGARLLSRTTRSVIPTHDGVAF 85

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   S +    E  +   + +  +  G+L++     +G+ ++   + EF+  YP+I +++
Sbjct: 86  YEQCSRLVDDYEEVEGLFRTAHAELRGRLKVNVPGRIGRMIIAPAVPEFVSKYPNIALEI 145

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+ ++  DC +R+   +  S+LI R++  + +   A+P YL     P+   +L
Sbjct: 146 GITDRTVDLQLEGIDCVVRVGD-LADSNLIARRIGDLDIINCASPDYLDRNGVPVRPSDL 204

Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            KH  I +     G   P    D   L +++ P   P I+   V++   ++  C+ G G+
Sbjct: 205 RKHRTIAYMPPSGGKPEPWQYVDAKGLQSLNVP---PSIA---VDNAEMLIACCLAGLGL 258

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +P Y V+++     LV ++    +P   ++  YP     +G+L+AF
Sbjct: 259 IQVPSYDVREHLRRGELVEVLPKYCSPPMPIHIVYPHRRHLSGRLQAF 306


>gi|241764125|ref|ZP_04762161.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241366531|gb|EER61024.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 309

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 125/265 (47%), Gaps = 24/265 (9%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V R GSFT AA  L +S  ++S  I GLE  +G++L  R  R ++ TE G +L+  
Sbjct: 13  AFVHVVREGSFTRAAALLGVSPGALSHAIKGLEARLGVRLLTRTTRKISTTEMGERLYAS 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S  + +++     + E   KP+G +RI        ++L   L + L  YPDI +++ +D
Sbjct: 73  VSPRFEEIDAEVAAVAEMRDKPAGTIRITAAEHAANSVLWPKLSQVLHDYPDIHVEITVD 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
               DI     D  +RL   +    +  R    + M    +P Y     +P +  +L +H
Sbjct: 133 YALSDIVSQRFDAGVRLGDQVAKDMIAVRVSPDLRMAVVGSPGYFTKYPKPATPHDLAQH 192

Query: 190 NLI-----TFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGS 239
           N I     T G L+P    K  ++ N+           R++   V NS  SI++  + G 
Sbjct: 193 NCINLRLPTHGSLLPWDFDKHGKEINF-----------RVAGQWVFNSTTSIVRAALAGY 241

Query: 240 GIALLPDYIVKDN---PNLVRIMED 261
           G+A +P+ +V ++     LVR+++D
Sbjct: 242 GLAFVPEDMVLEDIAARRLVRVLDD 266


>gi|170736993|ref|YP_001778253.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819181|gb|ACA93763.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 331

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 11/296 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 28  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 87

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LR+ +T   G+ ++   L++F   YPDI + L+L
Sbjct: 88  CRPGIEHLAQALEDMRELRSGPPSGHLRVGSTPGFGRKVIAPLLRDFHAQYPDITLDLLL 147

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++  D S D  D A R  + ++ S+++ R+L+ + M   A+P Y      P  + +L +
Sbjct: 148 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAHRHGLPRHVDDLAR 206

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  I       +  E   W   +D    + +++     N    +++  + G GIA LP Y
Sbjct: 207 HRCINLCTASGRVTE---WEFRIDGVTQQRQLTAHHTFNDIDLVVRAALDGLGIAQLPAY 263

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298
            V D   +  LV  +          Y CY        +++ F +++    +ARD +
Sbjct: 264 QVCDLLADGRLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTRARDLQ 319


>gi|78062042|ref|YP_371950.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969927|gb|ABB11306.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 316

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 138/286 (48%), Gaps = 11/286 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V   GSF  AA +L +SQ  ISR+++ LE ++  +L  R  R ++LTE G   
Sbjct: 6   SMRSFVQVVNDGSFIRAATRLGISQMMISRRVNWLEEQLERRLLVRRTRSVSLTEFGKTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   S++  KL+  +  +   +  PSG LR+A ++ L    L   L+++   YP++    
Sbjct: 66  YTRVSDILAKLDEVEHAVSVPTQTPSGTLRVAVSVGLSLRHLSSCLRDYCDSYPEVLPVP 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +D+  D  D  I     +  +SL+ R + +  + A A+P YL+   EP    EL
Sbjct: 126 VLVDRPVDLVADGYDAGIVDLSSLSCTSLVARAVFSAPLIAVASPGYLQRRGEPTHPAEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +      P+  +    L + D   G   I+C   +  N+   +MQ  + G GIAL
Sbjct: 186 AEHAYLAISG--PQRGKPELQLDSAD---GTVTITCNPAVVANNIDFLMQMVLSGMGIAL 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +   +V+   +   L R+++D   P+ T    YP       K++ F
Sbjct: 241 IQPALVQRELEQGTLKRVLQDHWAPAPTFGIVYPSRRHLPAKVRTF 286


>gi|148253444|ref|YP_001238029.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405617|gb|ABQ34123.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 308

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 138/293 (47%), Gaps = 16/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA   SFT AA +L ++  +IS+ +  LE ++G++LF R  R + LTE G +L
Sbjct: 8   ELTAFVAVAERLSFTKAARELGMALPTISQTVRSLEEDLGVRLFNRTTRSVALTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSV---KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +EV   LE     L+  ++   KP G LR+      G   L   ++ F   YPDI+
Sbjct: 68  ---LAEVLPVLEGVGQALESINLFREKPIGTLRLTVVRPFGLRQLAPLIRSFSAEYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ LD+ ++DI     D  IR+   +     I R L    M   A+P+YL    EPLS 
Sbjct: 125 LEIALDDANVDIVKHRFDAGIRVGSGVGRDMKIVRMLDDFAMLTVASPNYLSRHPEPLSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L +HN + +    P       W L+   + +  P    L VN    +++  + G GIA
Sbjct: 185 GDLRRHNCLKYRS--PGENSIHQWTLSDGRQKMDVPVEGSLVVNDLDLLVEAALNGVGIA 242

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            LP  IV+ +    R++   + P +      ++  +P   +    L+ F  FI
Sbjct: 243 YLPRPIVETHLAAGRLVH--VLPGWEYMMPGIFLFHPSRRQVPVPLQVFVKFI 293


>gi|282600345|ref|ZP_06257559.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
 gi|282565602|gb|EFB71137.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
          Length = 303

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 8/251 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  V  SG+FT A+E LH+++S++S+ IS LE  +G+ LF R  R   LT+ 
Sbjct: 4   LDLNCLPIFIAVVESGNFTAASELLHVTRSAVSKSISRLENSLGVALFQRTTRQQVLTDD 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+   S+  + L+     L+       GK+ I     LG   +   L E + LYP +
Sbjct: 64  GMVLYEYASKALNSLQEASNFLESGKRHVEGKVCITAPRLLGNLYVIPLLIELMNLYPKL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +L+++ +D+  +    A+R+ K   S+ LI  ++    M   A+P YL     P  
Sbjct: 124 EIETLLNDRKMDLQQEGIHIAVRVGKLPDSNQLIAHEIGHHKMILCASPGYLTKNGIPQK 183

Query: 183 IQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           I EL+ H LI +   G ++P  + D +    +  P  +  +  +Q     +IM   + G 
Sbjct: 184 ISELNSHQLIAYTQVGQVLPWQLYDDHQQEYLYLPTSKFMMDDMQ-----AIMSAVLQGG 238

Query: 240 GIALLPDYIVK 250
           GIA LP ++V+
Sbjct: 239 GIAYLPQWLVQ 249


>gi|239994569|ref|ZP_04715093.1| transcriptional regulatory protein [Alteromonas macleodii ATCC
           27126]
          Length = 294

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD +R+F  +AR+G    AA+ L +  +++ R++  LE  +  KLF    +G  LT  G
Sbjct: 2   NWDDMRLFLGLARNGRVAIAAKGLKVDPTTLIRRVKKLEDSLNCKLFELTKKGYVLTTHG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+L     +  H     Q EL +     +G +R++ +   G   L   L +F   YP I 
Sbjct: 62  SELVTYIEKAEHYFLEAQNELGDERSHLAGTIRVSVSEGFGSWFLAPLLPDFKKQYPGIS 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+  +  ++++   AD AI L KP     L+ +KL   +++ Y     + +  EP ++
Sbjct: 122 IELVATSGFLNLNKREADMAILLEKP-SKGLLVTQKLTDYNLYLYTHQSLISD-NEPRTL 179

Query: 184 QELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           QEL   NL+++  DL+      F             ++S L+  S  +  Q  V G+G+ 
Sbjct: 180 QELTAFNLVSYVPDLVYAPQLKF------IEETALSQLSALRSTSINAQYQMLVNGAGVG 233

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP ++ +  P LVR++E+ I    T +    +   +  + + F  ++
Sbjct: 234 ILPKFMAETQPGLVRLIENEIHIKRTFWLATHKETHSQARFQVFTKWL 281


>gi|312964668|ref|ZP_07778919.1| putative transcriptional regulator [Escherichia coli 2362-75]
 gi|331681683|ref|ZP_08382316.1| LysR-family transcriptional regulator [Escherichia coli H299]
 gi|312290689|gb|EFR18567.1| putative transcriptional regulator [Escherichia coli 2362-75]
 gi|323191416|gb|EFZ76678.1| putative transcriptional regulator [Escherichia coli RN587/1]
 gi|331080885|gb|EGI52050.1| LysR-family transcriptional regulator [Escherichia coli H299]
          Length = 297

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  I  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275


>gi|281177479|dbj|BAI53809.1| putative transcriptional regulator [Escherichia coli SE15]
          Length = 308

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G  L+ V 
Sbjct: 15  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 75  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134

Query: 131 KDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL +        I  S LI  KLVT+     A+P YLK    P + 
Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAIPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302


>gi|262279544|ref|ZP_06057329.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259895|gb|EEY78628.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 300

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 115/214 (53%), Gaps = 9/214 (4%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA   S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADVEVFLIVAEKLSISAAAIYLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR +  + +SSL+ R L    +   A+P+YLK  
Sbjct: 121 QYPDIQIEISISNRNVDLIAEGFDLAIR-QGHLPNSSLVARPLELAPLQLVASPNYLKRV 179

Query: 178 REPLSIQELDKHNLITF-----GDLIPKCMEDFN 206
             P S++EL+ H  I F     G + P   +D +
Sbjct: 180 GIPQSLEELNHHQCIAFELPSSGKITPWFFKDVD 213


>gi|330890287|gb|EGH22948.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. mori str. 301020]
 gi|330989456|gb|EGH87559.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 298

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 136/287 (47%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA + SFT A ++L +S S + + I  LE  +G++LF+R  R + +T +GS     
Sbjct: 9   VFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEEGLGVRLFHRSTRSIAMTLEGSIFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LET ++EL  +   P G+LRI  ++ L   L+   + EF+  YPDI++ +   
Sbjct: 69  CRRILSELETAEMELSNARDLPRGRLRI--SLPLVSGLVMPVIIEFMRTYPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R   P   S L+ R++    +    AP Y      P    +L +H
Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSRRMGGFQLKIVGAPDYFSRRGTPQHPADLSRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +      P   +  +W   + R  G   +   QV   N+   ++     G GIA LPD
Sbjct: 186 ACLLHK--FPSSGKFEHW--PLRREAGADDLDLPQVMVCNTTEILVDVARAGLGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++        LV I+ D    + +    +P +   + +L+ F +F+
Sbjct: 242 FMISSAIRTGELVPILTDYTVHTGSFRLLWPSSKHLSLRLRVFIDFM 288


>gi|206564589|ref|YP_002235352.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198040629|emb|CAR56615.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 334

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 138/296 (46%), Gaps = 11/296 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 28  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 87

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LRI +T   G+ ++   L++F   YPDI + L+L
Sbjct: 88  CRPGIEHLAQALEDMRELRSGPPSGHLRIGSTPGFGRKVVAPLLRDFHARYPDITLDLLL 147

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++  D S D  D A R  + ++ S+++ R+L+ + M   A+P Y      P  + +L +
Sbjct: 148 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAHRHGLPRHVDDLAR 206

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  I       +  E   W   +D    + +++     N    +++  + G GIA LP Y
Sbjct: 207 HRCINLCTASGRVTE---WEFRIDGLTQQRQLAAHHTFNDIDLVVRAALDGLGIAQLPAY 263

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298
            V D   +  LV  +          Y CY        +++ F +++    +ARD +
Sbjct: 264 QVCDLLADGRLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTRARDLQ 319


>gi|146343447|ref|YP_001208495.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146196253|emb|CAL80280.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 303

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA SGSF+ A   L L+ S++SR +  +E  +G +L  R  R LTLT +G    
Sbjct: 12  LEVFCAVADSGSFSAAGRGLGLTPSAVSRTLDRIEIRLGARLLLRSTRALTLTAEGQAYL 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L   +  + + S  P G++R++  +  G+  +   L EF+  YP+I + + 
Sbjct: 72  AAARRILADLNEAEQAIADQSA-PRGRIRVSAALSHGRICIVPLLGEFVRRYPNILVDIN 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+   AD AIR   P+  S+L  R+L        A+P YL  C  PL+ ++L 
Sbjct: 131 LSDGLVDIAAGQADVAIR-GGPLADSALTARRLSDNGRSIVASPDYLARCGVPLTPEDLH 189

Query: 188 KHNLITFG 195
            HN + +G
Sbjct: 190 HHNCLNYG 197


>gi|254491199|ref|ZP_05104380.1| LysR substrate binding domain, putative [Methylophaga thiooxidans
           DMS010]
 gi|224463712|gb|EEF79980.1| LysR substrate binding domain, putative [Methylophaga thiooxydans
           DMS010]
          Length = 306

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 141/287 (49%), Gaps = 16/287 (5%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS   AA +L++S ++ S+ I+ LE  +G +L  R  R L LT+ G   ++    +  +L
Sbjct: 17  GSIAAAARRLNISSAAASQNIARLEKGLGARLLTRTTRSLALTDSGEVYYQRVKGLIQEL 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E  +  +  S  + SGKL +A +    +++L   +  F   YP I ++++  ++  D   
Sbjct: 77  ELAEQAVSASQGEVSGKLTVACSAAFARHVLAPLIPGFQAAYPQISLEVVATDRRPDHIG 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           +  D +IR+R+ ++   ++ RK+ T+ +H  A+P YLK    P + Q L +HN + F   
Sbjct: 137 EGIDVSIRIRQQLE-EGIVARKVATVPLHFCASPSYLKQVGCPDTPQALLQHNCLMF--R 193

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLGSGIALLPDYIVKD---NP 253
           +P   + F W    D    EP +    ++  + ++ +  + G GIA L  ++      + 
Sbjct: 194 VPVEGKIFRWAFIRDGVRYEPEVKATMISDDIDLLARLAISGGGIARLASFVAMPFLADG 253

Query: 254 NLVRIMEDVITPSFTV-------YFCYPEALKNTGKLKAFRNFIFLK 293
           +L+++ E   +P   V       YFC  +    T K+ AF  F +LK
Sbjct: 254 SLIQLFEKEQSPDVEVEAEPLEYYFCLLDRYAKTPKVTAF--FEYLK 298


>gi|110635646|ref|YP_675854.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286630|gb|ABG64689.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 293

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 23/296 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +RVF  VAR+G    AA +L L+ +++SR+++ LE   G KLF R   G  LT  
Sbjct: 1   MDWDDVRVFLAVARAGQILGAARRLGLNHATVSRRVAALEDAAGAKLFRRLTTGSELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +   +   + E+       SG +RI      G   L   L      +P +
Sbjct: 61  GERLLAAAERMEADMIAARAEIAGEGEDISGSVRIGAPDGFGVAFLAPRLWRLTERHPRL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   + + +S   AD AI + +P +   L+  KLV   +  +A+  Y      P +
Sbjct: 121 SIQLVPVPRSLSLSRREADIAITVDRPTE-GRLVASKLVDYSLGLFASKAYAAGHGLPQN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             EL  H L+ +   +P    D  +  T+D    I E   +   V+S +  ++    G+G
Sbjct: 180 AAELAHHRLVGY---VP----DLVFSPTLDYAAEISEHWDAAFAVSSAMGQVEAVRAGAG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
           I +L  +I        R MED++   F      + +  + E+++ T +++A   FI
Sbjct: 233 IGILHCFI-------ARGMEDLVAVPFAQPIRRSYWLVFHESMRMTRQIQAAAAFI 281


>gi|86748062|ref|YP_484558.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86571090|gb|ABD05647.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 332

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 135/290 (46%), Gaps = 7/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + +DW+ +  F  VAR  S   AA +L +  +++SR+I  LE  +   LF R   G +LT
Sbjct: 27  IRYDWNDVVYFLEVARQRSLVRAAAKLKVDHTTVSRRIRELERSLNSTLFKRSKSGFSLT 86

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L +    +  +       +   +    G +RIA    +G   L   + +F  +YP
Sbjct: 87  EIGMRLLQYAEGMESQANAIVEAIGTDTADAGGAVRIAAMEGIGSFYLTPCIVDFNKIYP 146

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQI+LI D + +D+S   AD  +   +P     L  +K+    +  YA+  Y +   EP
Sbjct: 147 SIQIELITDTRLLDLSRREADIFVSFFRP-HGKRLSIKKVGEFRISLYASNRYFEGRSEP 205

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + +EL+ H  I F +      E+  WL+ V RP   P  +  +  S ++       G G
Sbjct: 206 RTQKELEDHAFIDFIEDHIYSKEN-RWLSDVLRP---PH-TIFRSTSLVAQSIAVSAGQG 260

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA+LP Y+      L  +M ++ T +  ++    E L +  ++KA   F+
Sbjct: 261 IAMLPTYVASGRSELRPVMPELFT-TRDIWLSVHEDLLHIARIKAVITFL 309


>gi|298489047|ref|ZP_07007070.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156545|gb|EFH97642.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 304

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 138/289 (47%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F +VA+  +F+  AEQ+ L+ SSIS  +S LE ++G +LF R  R + LT++G  
Sbjct: 9   DDLRIFNLVAQLKNFSRVAEQIDLAPSSISMAVSRLEAQLGARLFQRTTRKMVLTDEGLT 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   +  +    +      ++     +G+LR+   + +   L+   L EF   +PDIQ+ 
Sbjct: 69  LLSRSERLLEDFDEVTSLFRQPGNHLTGRLRVDLPLGMAAGLVMQRLPEFHARHPDIQLD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  D  DC +R+       SL+ R L  + +   A+P Y++    P +  +
Sbjct: 129 IFSTDRRVDVIADGFDCVVRVGA-ATDVSLVCRPLGALPLVNVASPAYIEAYGMPATPAD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+ +          F ++  TV R +  P    + VN+  +    C  G GI+ L
Sbjct: 188 LALHYLVNYAPNPSDSAAKFEYMDGTVARTVTVPH--KVTVNNSPACGAACRAGFGISQL 245

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V     +  LV+++ D +  +  +   YP       +++ F +++
Sbjct: 246 PLLGVASYLASGLLVKVLPDYLPATMPINLLYPHRRNVPQRVRLFGDWL 294


>gi|262372497|ref|ZP_06065776.1| LysR family transcriptional regulator [Acinetobacter junii SH205]
 gi|262312522|gb|EEY93607.1| LysR family transcriptional regulator [Acinetobacter junii SH205]
          Length = 307

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 143/295 (48%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE ++G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEYGGFSAAERATEIPKSKLSRRVYNLEEQLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S +P G ++++  +D+ QN +   L  FL  YP
Sbjct: 61  DIGMDVYRHAQVMMNAAQAAHDVVNHLSSEPRGVIKVSVPVDIAQNQMAKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++++Q+++ N+ +D+  +  D A+R+R  +    +L+ R+   I    +A+  YL     
Sbjct: 121 EVRVQMMVSNRRVDVINEGIDLALRVRSKLDDDPNLVLREFEAIEQRLFASQAYLNEFGH 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
             + +EL KH +I+  +     ++    L+  +    + +++  +  ++ L + Q     
Sbjct: 181 LNTPEELSKHRIISMSE---DHLDQQFLLSGPNNQQQKIKVNPVIMASNLLMLAQLASQN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLPD I +D   +  LV+++ +   P    +  YP      G L A R FI
Sbjct: 238 CGIALLPDSIAQDFVKSGQLVKVLPEWTAPHGIFHAVYP---SRRGLLPAVRVFI 289


>gi|323497753|ref|ZP_08102768.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323317229|gb|EGA70225.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 293

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 141/277 (50%), Gaps = 26/277 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  V++ GSFT  A ++  SQSSIS++++ LE ++G  L +R +R + LT QG +
Sbjct: 5   DCIRVFVRVSQLGSFTQVANEMDTSQSSISKKMAWLEKQIGFTLLHRTSRQIMLTTQGQE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               +  +  +++  +  L+    + SG L++          L   + +F+ L+P + ++
Sbjct: 65  YLSYSQRLLDEMDAMESRLKLELNEVSGTLKLTCPSAFATQRLAKPVSKFMALHPSLSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +++K I++     D AIR    +  SS   RK++   +  +A+  Y+    +P+S  E
Sbjct: 125 VSVEDKVINLHQADVDIAIRASH-LDDSSFKARKIMLHQICYFASSQYVATMGKPISPVE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L  H  + +  + P  +    WL  +D   GEP    ++VNS  S      ++Q   LG+
Sbjct: 184 LSDHRCLVYSLMTPSNV----WL--ID---GEP----VRVNSVFSSDSPDMLVQMARLGT 230

Query: 240 GIALLPDYIVKD---NPNLVRI---MEDVITPSFTVY 270
           GIA +P ++V +      LV +   ME  + P + VY
Sbjct: 231 GIAAMPRWMVDNELKEETLVELFPDMEKTMLPMYAVY 267


>gi|224825200|ref|ZP_03698306.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602871|gb|EEG09048.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 303

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 12/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    VA +G F+ AA +L ++ SS++R +  LE  +G  L  R  R + LT+ G+   
Sbjct: 7   LRTLVEVAETGGFSKAARRLGVATSSVTRLMDALEQSLGTVLLTRTTRRVLLTDAGANYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +   LE     + +   +P G LR+A  +   +  L G L  F+  YP +++ L+
Sbjct: 67  EQVSRLLADLEEADSSIADGREEPMGSLRVAVPVTYSRLCLGGALSGFMTTYPRVKLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D++++  D A+R+  P +   LI +KL        A P YL+    P +  EL 
Sbjct: 127 VSDAYQDLAVERLDLAVRIGLPNRDEHLIVKKLAENRRFLVAGPDYLERHGTPRAPIELA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246
            H  + F     +      W    D    E  +    + + L ++   VLG  GIALLP+
Sbjct: 187 SHACLRFAYRPGRQ----RWTFRSDARSEEVEVDGPFITNSLDMLHEAVLGGHGIALLPE 242

Query: 247 YIVKDNPNLVRIMEDVITPSFT-------VYFCYPEALKNTGKLKAFRNFI 290
           ++V+ +    R++      S T       VY  Y    +++ K+ AF  ++
Sbjct: 243 WVVQQDIRAGRVLRLCDAWSVTPQQGDAYVYAAYLPNRRHSRKVHAFIQYL 293


>gi|300781857|ref|YP_003739092.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299060123|emb|CAX53313.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 289

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 10/264 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V ++ SF  AAE L +  S++SR+I  LE  +G++L +R  R + LTE G   +  +
Sbjct: 4   FVEVVKAQSFRGAAEALGMPNSTLSRKIKELEKFIGLRLLHRTTRKIELTEAGQIYYERS 63

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +      +L     +P G LR++   D    +L   +K F   YP I     L  
Sbjct: 64  RRIIDEARLAHEQLGSLLAQPQGMLRVSLPADFAVVILAPLIKAFSDFYPGISFDFDLTP 123

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +++D+  +  D A+R+   +  S LI RKL ++    YA+P YL     P +  EL  H 
Sbjct: 124 RNVDLVSEPYDLAVRM-GSLPDSGLIARKLGSLSRSLYASPDYLVQNGTPGNPDELTAHE 182

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV 249
            I      P      +W    +      RIS   Q+NS   + ++  +G+GIA+LPD IV
Sbjct: 183 CIGMRQDKPG-----HWHLHREESRISLRISGRFQMNSIGMMRRFASMGAGIAILPDKIV 237

Query: 250 KD---NPNLVRIMEDVITPSFTVY 270
            +   +  L R++ D    + T+Y
Sbjct: 238 GEDVADNKLTRVLPDWRAEAVTIY 261


>gi|218675220|ref|ZP_03524889.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 293

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 140/291 (48%), Gaps = 13/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFVRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   + + +  +P +
Sbjct: 61  GGVFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGKLIERHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P Q   L+  KL    +  YA+  YL +   P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYTLGLYASRDYLAHHGRPGD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239
           ++ L  H  I +       +ED  + A+++   GE   S     ++++ +   +    G+
Sbjct: 180 VEALKAHPRIGY-------VEDLLFTASLNFS-GEVMRSWDAGFEISTAIGQTEAVRSGA 231

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +L DYI +  P L RI+ +V +     +  Y E  ++  ++++  +F+
Sbjct: 232 GIGILHDYIARQYPELQRILPEV-SIRRAYWTTYHETARDLVRVRSVVDFL 281


>gi|215483208|ref|YP_002325415.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|213988332|gb|ACJ58631.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
          Length = 300

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 141/296 (47%), Gaps = 13/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237
             S  EL  H++++  +   + ++    L   D  + + ++S   +  N Y+ + Q    
Sbjct: 181 IKSPDELSDHHILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYM-LAQLASQ 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GIALLPD   +D   +  LV+I+ D        +  YP      G L A R FI
Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289


>gi|117618645|ref|YP_855289.1| regulatory protein, LysR:LysR, substrate-binding [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560052|gb|ABK37000.1| regulatory protein, LysR:LysR, substrate-binding [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 289

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 135/284 (47%), Gaps = 9/284 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR G+   AA  L + Q+++ R+I+ LE  +G KLF R  +   L+  
Sbjct: 2   INWDDARFFLALARQGTLRGAAGVLGVDQATVGRRITALEQNLGSKLFIRTPKLYDLSPL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +    S +   ++  + +         G++RIATT  L Q  +   L      +P I
Sbjct: 62  GEAMLADASAMEQAIKAIERKASADDQSLCGEVRIATTDTLAQAFVLPALTLLRERHPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L       DI+   AD AIR   P  +  L+ ++L TI M  YA+  YL     P S
Sbjct: 122 RLSLQTAVSVSDIAYREADLAIRGLCP-DNDELVIKRLTTIEMGLYASRDYLARHGTPKS 180

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              L +H L+ F  +L+ +     +W +    P+ EP +  LQ N+ L ++     G GI
Sbjct: 181 GHGLSQHALLLFARELVSR-----HWHSLCGEPLHEPNV-VLQCNAQLLLLAAARQGLGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           ALL  ++    P+LVR++  +  P       +P+ L+   +++A
Sbjct: 235 ALLSTFLADKEPDLVRVLPSLCDPVDIWLVLHPD-LQKASRVRA 277


>gi|294139133|ref|YP_003555111.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293325602|dbj|BAJ00333.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 315

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 137/285 (48%), Gaps = 33/285 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F+ +  +GS   AA+ L+L +S++SR++  LE E+ +KLF+R +R +TLT  GS 
Sbjct: 5   EDISLFHRIVETGSLVEAADLLNLPKSTVSRRLQALEDELKVKLFHRQSRAMTLTASGSH 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRI-----ATTIDLGQNLLQGNLKEFLLLYP 120
            +  T  +   LE T +EL ++  +  G LRI        +D+   +      EF+    
Sbjct: 65  FYDKTLSILGDLEQTLMELTDTQAEIGGHLRILMFPVPELLDIANGIF-----EFMEHNS 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++LI+  +  D+  +  D A  +      + ++ R++++  +H  A+P YL     P
Sbjct: 120 ELTVELIVSTEPQDMIRNNIDLAFMVEDSFNENEMVAREVISEELHFVASPGYLAKAGTP 179

Query: 181 LSIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC- 235
           +  ++L+KHN I F    G +       FN +     P G      ++ N  L+ ++ C 
Sbjct: 180 VLPEDLEKHNSILFRYPNGRI-------FNEV-----PFGNDMKIAVKGNLCLNSIELCL 227

Query: 236 ---VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
              + G GIA LP  + +   +   L  + EDV       Y  YP
Sbjct: 228 EASITGRGIAFLPTKVTREYVERGELTILFEDVEPYIGKCYLVYP 272


>gi|226363874|ref|YP_002781656.1| LysR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242363|dbj|BAH52711.1| putative LysR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 302

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 21/297 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  D +R    ++R+G    AA++L + Q+++SR+I+ LE + G +LF R A G  LTE 
Sbjct: 5   FTADNMRYLLELSRTGRLADAAKRLDVDQTTVSRRITRLEKDTGTRLFDRGASGWQLTEA 64

Query: 63  GSKL----HRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEF 115
           G +L      V S +   L+ T      SS  P   +G +RI T    G  +L   L   
Sbjct: 65  GRRLVPYAESVESTLLAALDVT------SSAAPGALTGTVRILTPDGFGAFVLVPGLAAV 118

Query: 116 LLLYPDIQIQLILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
              +PD+  +L+     D+    D+ D A+ L +P    S++ RKL    +  YA+ HYL
Sbjct: 119 RTEHPDLFTELVTSTTHDVLTGRDF-DIAVTLERP-SPRSVVVRKLAEYDLRLYASRHYL 176

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
                  +I +L  H LI + D       D   L  +DR + + R + +Q N+     Q 
Sbjct: 177 DTHDAIATIDDLRTHTLIWYVD----AFLDVEPLRILDRLLPDFR-AQIQTNNIAGHYQA 231

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              G GIA LP YI   + +LV I+ D      T +   P  L    ++KA    ++
Sbjct: 232 VKHGVGIAPLPSYIGALDEDLVPILTDDFIAHRTYWLVVPRELTRLARVKAITEALY 288


>gi|161615833|ref|YP_001589798.1| hypothetical protein SPAB_03624 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161365197|gb|ABX68965.1| hypothetical protein SPAB_03624 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 303

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 144/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRATLISRFTIL----PVAAPQWL--ARNPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V    +   L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 235 GSGVALLPQWLVNTALEEGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|320197247|gb|EFW71863.1| Putative LysR-like transcriptional regulator [Escherichia coli
           WV_060327]
          Length = 329

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G  L+ V 
Sbjct: 36  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 95

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 96  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLIEPHIGEFLTRYPKTKIELIMDD 155

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323


>gi|254477319|ref|ZP_05090705.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214031562|gb|EEB72397.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 292

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VA+ G+ + AAE L +  +++ R +  LET +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVAKMGTVSGAAEVLGVHHATVIRHVDALETRLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+      SG+L + T++     LL   L EF   +PD+ 
Sbjct: 63  QDLLRVAQATDDQFGQLVGRLKGHGDAVSGEL-VVTSLSAMSALLVPALTEFQNQHPDLI 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+ +  ++   +    A  AIR   P +    + +  +T   + YA+  Y+        +
Sbjct: 122 IRFLTGSRLFRLEYGEAHVAIRAGAPPEQPDNVVQPFMTQQHNLYASQGYIDKYGPLKGL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ++  H  +   D+  +      WL     P       C+   + +S+    + G+GI  
Sbjct: 182 DDMANHRFVANDDVESRAPYS-KWL-RAHAPESALSFRCV---AGVSMQDALIAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L  +     P+LVR+M+ +   +  ++      L  T K++ F  F+  +A+ W
Sbjct: 237 LTQWEAARYPHLVRMMDPLPEWTSDLWLVTHVDLHRTPKVQTFLKFLKAEAKAW 290


>gi|167550237|ref|ZP_02343994.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205324785|gb|EDZ12624.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 314

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 144/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLTDSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQRSRLEISKAGKISVDSARSLMAFALA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V    +   L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 235 GSGVALLPQWLVNTALEEGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|70729830|ref|YP_259569.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344129|gb|AAY91735.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 315

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 140/300 (46%), Gaps = 17/300 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + V+  V  +G+ T AA +  +S + +   +  LE  +G++L  R  R   LT+ G 
Sbjct: 4   FQAMSVYVKVVEAGNMTAAARECGMSTTMVGNHLRALEQRLGVRLLNRTTRRQRLTDFGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    V   +  ++   ++   +P+G LRI   +  G   L   L EF    P +++
Sbjct: 64  DYYQRCLAVLGLVADSERLAEQVQGEPTGTLRITAPLTFGTERLAPALDEFRQRCPQVKV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+  D++    D A+RL   + ++SLI R+L    +   AAP YL+ C  P   +
Sbjct: 124 ELTLANQRFDLTDGTFDVAVRLGN-LDNASLIARRLQDYTLTICAAPEYLERCGTPQVPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGE---PRISCLQVNSYLSIMQYCV 236
           +L +HN + F    P   E   W AT        P G+   P    L  N+   + +   
Sbjct: 183 DLQRHNCLAFA--YPAGDE---WSATATLWPLRGPEGDVQVPVSGSLLANTSSGLHRAAR 237

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+ ++PD +V+++     LV +++D   P  T++  Y +      KL++F +F   K
Sbjct: 238 GGLGLVMMPDALVEEDLQQGRLVPVLQDYQLPFRTMHLLYAQDRYRLPKLRSFVDFALEK 297


>gi|149927837|ref|ZP_01916088.1| transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
 gi|149823459|gb|EDM82690.1| transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
          Length = 300

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 132/273 (48%), Gaps = 9/273 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA +  ++ + ISR++  LE  +G+KL  R  R L LT +GS  
Sbjct: 6   QITTFAAVATKGSLSAAAREEGVAPAVISRRLDALEERLGVKLLLRTTRTLNLTYEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + L   +  +    +K SG LR++     G+  +   + +F+  +P++ + L
Sbjct: 66  LEDCQRILNDLSNAEASVSLGGIKASGHLRVSAPGGFGRQHVAPLVHDFVREHPEVTVSL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+R+   +  SSL+  KL        A P YL+    P    EL
Sbjct: 126 DLSDRVVDLLNENIDCAVRI-GVLPDSSLVGVKLADNQRLVVATPTYLQRHGSPQHPLEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            KHN +   +L+        WL T++      R+S  L  N   SI+ + +  +G+A   
Sbjct: 185 AKHNCL---NLVSSGAPS-GWLFTINGEATPIRVSGNLACNDGSSILDWVLNDAGLAWRS 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            + V+    + +LV +++D I P   +Y  +P+
Sbjct: 241 RWEVQQYLRSGSLVTVLDDFIAPPNAIYAVFPQ 273


>gi|114326958|ref|YP_744115.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315132|gb|ABI61192.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 468

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 142/295 (48%), Gaps = 16/295 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   VF  VA SGSF  AAE+L LS+++IS+ I+ LE  +G  LF R +R L+LTE G
Sbjct: 166 DLEGWAVFARVADSGSFAGAAEELGLSRATISKIIARLEGRIGAALFNRTSRRLSLTEVG 225

Query: 64  -SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            + L R  S +  + +  +   + SS  P G +RI+  +  G   ++  L + L  +P I
Sbjct: 226 RASLERALS-MLEQAQGLEENARSSSAAPRGLVRISAPVSFGLMHVRPLLPQLLAEHPGI 284

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L LD+  +D+     D AIR+ + +  S L  R++  + M   AAP  L+  R P  
Sbjct: 285 DIDLRLDDAVVDLVAGGYDMAIRIAQ-MPDSGLRVRRIARMQMKIVAAPSLLERVR-PEH 342

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLG 238
            ++LD    + +G             +T +     P G      L+ N+   +++    G
Sbjct: 343 PRDLDMALCLGYGHGTMAGRWRLRRESTGEEASLLPAGR-----LRTNNGEIMLEAARSG 397

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G AL PD+++ D+     LV ++ D   P   +    P +L    ++ A  +F+
Sbjct: 398 QGFALAPDFLIWDDLTAGTLVPVLTDWSLPLLELNIVLPPSLLRPARIAAVASFL 452


>gi|224824023|ref|ZP_03697131.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603442|gb|EEG09617.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 305

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 137/284 (48%), Gaps = 8/284 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++ + GS T  A +L+L+  ++SR+++ LE  +G++L  R  R ++LT +G   
Sbjct: 4   ELAFFCLLVKQGSLTATARELNLTPPAVSRRLAQLEERLGVRLLNRTTRRISLTSEGEVY 63

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +  +++  +  +  S   P G LR+   +  G++ +   +  F   YPD+++QL
Sbjct: 64  FQNAMRILSEIDEMEQLVSSSRAAPKGHLRVNAPLGFGRSYIGPAISAFAKNYPDVEVQL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ + +  D  D +IR    I  S LI +K+        A+P+YL+    P +  +L
Sbjct: 124 LLTDRPVSLPDDAIDVSIRF-GDIPDSRLIAKKIAGNRRLLVASPNYLRAIGIPSNPHDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            KH  I    L        NW  +  +     +++  L  N     + + + G GI +  
Sbjct: 183 TKHQCIV---LRQNEYAYGNWRLSRGKLTETIKVNGKLSTNDGEVALNWALEGHGILMRA 239

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++ V     +  LV+++ D  TPS  +Y  YPE L  + K+  F
Sbjct: 240 EWDVAKYLRSGRLVQVLADYDTPSADIYAVYPERLNLSAKVAYF 283


>gi|221211013|ref|ZP_03583992.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168374|gb|EEE00842.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 320

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ +++ 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAERFPDVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YLK    P ++ +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHILLVASPEYLKKHGTPETLADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +             N  A   R         L VN    +    + G+GIALL  
Sbjct: 187 AQHNYLRRDSNASTLDAMLNDAAAASRVALN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIEAGRLVPVLVDAVPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|188533695|ref|YP_001907492.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis
           Et1/99]
 gi|188028737|emb|CAO96599.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis
           Et1/99]
          Length = 319

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 123/250 (49%), Gaps = 15/250 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  +AR  +F+  A +L +S S++S  I  LE  +G++LF R  R + LTE G++L
Sbjct: 8   ELSVFISLARQLNFSATARELGVSTSALSHSIRKLEARMGMQLFTRTTRSVALTEAGAQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +   ++LE    E+  S  +PSG +RI+      + L+Q  L +F   YPDI ++ 
Sbjct: 68  FRRAAPAINELEQAIHEVNSSRDRPSGTIRISAAEAGARPLIQNMLPDFFKTYPDIHVEF 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSL-IQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++D + +DI  D  +  IRL + +    + I     TI + A A+P YL     P S  +
Sbjct: 128 VVDTRYVDIVADGFNAGIRLLEDVPLDMVAIPFGPETIRIAAVASPDYLAKHGCPASPDD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239
           L  H  I F  L       ++W           R + + VN  +++      +   + G 
Sbjct: 188 LRNHQCIRFRFLSGAL---YHWDLEY-----RGRSTNVNVNGPMTLGNTNLMVDAALAGI 239

Query: 240 GIALLPDYIV 249
           GIA +PDY V
Sbjct: 240 GIAWVPDYHV 249


>gi|170694602|ref|ZP_02885754.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140484|gb|EDT08660.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 314

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 145/317 (45%), Gaps = 26/317 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVSVIDSGSITAAAEKLGQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGEGFLQRARAILDAMEEAEESVARKRRRPSGRLRVDAASPFMLHCIAPHMTAFSALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L    + +D+     D AIR+   +Q S+L  R L +  +   A+P YL    EP
Sbjct: 121 EIRLELTSSERIVDLLEQKVDIAIRI-GALQDSTLHARALGSSKLRVVASPAYLAEHGEP 179

Query: 181 LSIQELDKHNLITFG-----------DLIPKCMEDFNWLATVDRPIGEPRI----SCLQV 225
            S+  L +H LI F            +   +  +  +      R  G+P        +  
Sbjct: 180 KSVDALREHRLIGFTAPEHLNRWPLRERGKRAGKGTSASGRAGRAGGKPEPLKIEPSITA 239

Query: 226 NSYLSIMQYCVLGSGIALLPDYI----VKDN---PNLVRIMEDVITPSFTVYFCYPEALK 278
           +S  ++ Q  + G GIA L D++    ++D    P L  ++ D   P   VY+   ++  
Sbjct: 240 SSGETLRQLALSGWGIACLADFMTAADIRDGRLVPILGHVLLDERQPVSAVYY---QSAS 296

Query: 279 NTGKLKAFRNFIFLKAR 295
             G+++ F +FI ++ R
Sbjct: 297 LAGRVQCFLDFIAVRVR 313


>gi|190890434|ref|YP_001976976.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695713|gb|ACE89798.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327190567|gb|EGE57659.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 293

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 139/291 (47%), Gaps = 13/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P++
Sbjct: 61  GGIFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P Q   L+  KL    +  YA+  YL     P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYTLGLYASRDYLAAHGRPGD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239
           ++ L  H  I +       +ED  + A+++   GE   S     ++++ +   +    G+
Sbjct: 180 VEALKAHPRIGY-------VEDLLFTASLNFS-GEVMRSWDAGFEISTAIGQTEAVRSGA 231

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +L DYI +  P L RI+ + I+     +  Y E  ++  ++++  +F+
Sbjct: 232 GIGILHDYIARQYPELQRILPE-ISIRRAYWTTYHETARDLVRVRSVVDFL 281


>gi|167587391|ref|ZP_02379779.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 313

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 139/291 (47%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFMRVVDAGSFTAAAQQMNSTTAYTSRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++     LGQ+     +  +   YPD+ + L
Sbjct: 66  LQRCEQILAYVDQAEAEASDAHARPSGKLKVHCFTSLGQHYTVPAVSRYRERYPDVHVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D AI + + +  S L+ ++L   +    A+P YL+    P   Q+L
Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPRYLERHGVPQQPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
            +H  +  G + P    D +W  T+  P G+  ++      +VN   ++      G GI 
Sbjct: 186 ARHTCL--GMVAPGFHYD-DW--TLSGPNGDEHVALSSPPFRVNVAEALAVAVREGMGIG 240

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y       N + VR+M +  +    +Y  YP       K++ + +F+
Sbjct: 241 VLPIYSAIAGLRNGHFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 291


>gi|123440729|ref|YP_001004721.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087690|emb|CAL10473.1| putative lysr-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 297

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 123/278 (44%), Gaps = 16/278 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L VF  VAR  SFT AA  L +SQS+IS  I GLE  +GI+L  R  RG   TE G
Sbjct: 5   DFNHLAVFITVAREKSFTRAAAHLGVSQSAISHSIRGLEERLGIRLLTRTTRGAVPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  Y  +ET    L E   KP G +RI++       +L   L + L  YPDI 
Sbjct: 65  ERLLANLTPYYDGIETELATLGELREKPGGTIRISSHDHPATTILWPKLSKLLKEYPDIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D   IDI     D  +R+   I    +  R      M    +P Y     +P + 
Sbjct: 125 LEINVDYGLIDIVAGRFDAGVRIGDQIAKDMIAMRISPDFRMIVVGSPDYFSRHPKPETP 184

Query: 184 QELDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +L  HN     L T G L     E       V  P        +  N+   ++   + G
Sbjct: 185 HDLTSHNCANLRLSTHGGLFAWEFEKGGQEVKVQVP------GQMIFNTSPQLLTAALEG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMED--VITPSFTVYF 271
            G+A  P+ +V+       L+ ++E+   + P + +Y+
Sbjct: 239 YGLAYAPEDVVQRYIKEGRLMPVLEEWSPLLPGYHLYY 276


>gi|324010235|gb|EGB79454.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
          Length = 308

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G  L+ V 
Sbjct: 15  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 75  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLIEPHIGEFLTRYPKTKIELIMDD 134

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302


>gi|319780904|ref|YP_004140380.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166792|gb|ADV10330.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 302

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 4/246 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSF+ AA  L ++ S++S+ I+ LE  +G +L  R  R L LT +G+  
Sbjct: 11  EIEVFVRVVEEGSFSSAARALRMTPSAVSKLIARLEARLGARLVSRSTRKLQLTPEGTAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +         +   +   P G++RI + +  G + L   L  FL  YP+I + L
Sbjct: 71  YESGLRIL-ADMAAAEQEAAAGASPRGRVRINSYVPFGVHRLVPLLPRFLERYPEISVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  +D+  + AD AIR   P+  S L+ RKL    +   AAP YL+    PL+  +L
Sbjct: 130 VLTDSVVDLMAERADVAIRA-GPLSESRLVARKLGQSPVVVVAAPSYLETHGIPLTPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           DKHN + FG +  + ++ + +L    R I  P      V+   ++    + G+GIA L  
Sbjct: 189 DKHNRMGFGFV--RHLDGWPFLDAEGRVIMIPITGNTLVSDGEAMRLMALAGAGIARLAR 246

Query: 247 YIVKDN 252
           + V ++
Sbjct: 247 WHVAED 252


>gi|124265350|ref|YP_001019354.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124258125|gb|ABM93119.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 304

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 123/278 (44%), Gaps = 18/278 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS T AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QIESFAAVATKGSLTAAAGAEGVAPAVIGRRIDALEERLGVKLLVRTTRRITLTHEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L   +  +    VK SG LR+      G+  +   +  F   + D+ + L
Sbjct: 66  LEDAQRLLTDLANAEASVSAGGVKASGHLRLTAPAGFGRRHVAPLVPRFAEAHRDVSVSL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +DI  +  DCA+R+   +  SSL+  +L        AAP YL+    P    EL
Sbjct: 126 NLSDRVVDIVNEGYDCAVRVGD-LPDSSLVSLRLADNRRLCVAAPAYLQRAGTPQHPGEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +H  +T   L     +   W  +VD      RP G    S  QV     +  +C+ G G
Sbjct: 185 GRHQCLT---LSSNASQARGWAFSVDGELTHLRPSGRYDCSDGQV-----LHDWCLAGHG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           IA    + V+    +  LV +++D   P   +Y  +P+
Sbjct: 237 IAWRSTWEVEQEVASGALVTLLDDFAAPPNGIYAVFPQ 274


>gi|200386534|ref|ZP_03213146.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603632|gb|EDZ02177.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 303

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|188583416|ref|YP_001926861.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179346914|gb|ACB82326.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 304

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 11/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD L+VF  VAR      A  +L L+ ++++R++  LE  +G  LF+R   G  LTE 
Sbjct: 1   MNWDHLQVFLAVARHSQMLEAGRRLGLNHATVARRLDALEAALGTPLFHRRPNGSALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L  V   +  ++      ++    +PSG +RI     LG   L   L  F   Y ++
Sbjct: 61  GEQLVPVAERIEAEVLAVAARMRAQEAEPSGTVRIGAPDGLGTLFLARELGLFASRYANL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+   +   +S   AD AI L +P     LI  KL    +  YAA  YL     P S
Sbjct: 121 VIELVPLPRSFSLSRREADLAIGLDRPAH-GRLILSKLSDYSLGLYAAKAYLDRAGMPES 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           + +L  H  +         ++D+ + + +D     + R++   +    ++ ++    G+G
Sbjct: 180 VADLGSHAAVI-------GVDDYAYASALDYTAFLQDRVARVFRCVGAVAQLEAVRAGAG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +L D+     P+LVRI+ +           +P+    + ++ A R+F+
Sbjct: 233 LGILHDFAAAALPDLVRILPETAFRRSYWLMSHPDD-HGSRRIAACRDFL 281


>gi|161526131|ref|YP_001581143.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189349155|ref|YP_001944783.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160343560|gb|ABX16646.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189333177|dbj|BAG42247.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 320

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ +++ 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAERFPDVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YLK    P ++ +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHILLVASPEYLKKHGTPETLADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +             N  A   R         L VN    +    + G+GIALL  
Sbjct: 187 AQHNYLRRDSNASTLDAMLNDAAAASRVALN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIEAGRLVPVLVDAVPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|330939125|gb|EGH42552.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 303

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 139/306 (45%), Gaps = 13/306 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+FD + + +F  V RSGSF  AA QL +  ++ISR++  LE ++  +L  R AR L LT
Sbjct: 1   MAFDLNDVALFVQVVRSGSFAQAARQLCMPSNTISRRVQQLEMQLDTRLLQRSARKLVLT 60

Query: 61  EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           + G   + R    V   +E  + +L     +PSG +RIA   D         +  FL  Y
Sbjct: 61  QAGEVFYGRCVGAVDGVMEAAE-QLVSGRDEPSGLVRIAAMADFFDFFSMDWVAGFLARY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178
           P +Q++ +L +   D+  D  D A R   P+Q S  + R+L+   H    A+P Y+    
Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDEGHDTMVASPAYIAAHG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
            P S+Q L  H  ++             W L   D  + E  I+     N+  ++ +  +
Sbjct: 179 TPDSLQSLHSHYCVSAAHRGGVSA----WRLLGPDAKMHEVHIASRFNANTAQALRKATL 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K
Sbjct: 235 AGLGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDK 294

Query: 294 ARDWKF 299
            RD  F
Sbjct: 295 LRDKAF 300


>gi|315499519|ref|YP_004088322.1| transcriptional regulator, lysr family [Asticcacaulis excentricus
           CB 48]
 gi|315417531|gb|ADU14171.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 299

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 152/301 (50%), Gaps = 20/301 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D D L  F++V  +GSF  AA++L +++S +SR+++ LE ++  +L  R ARG   T+
Sbjct: 4   GVDLDDLHAFFLVVETGSFARAADRLGVAKSIVSRRVAHLEDQLKARLLTRTARGTQTTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    E   +LE  Q  + ++ ++ +G +R++  +  G + L   L EF +  P 
Sbjct: 64  VGALYYAKAREAMAQLEAAQEAVNDAMLEVAGPIRLSAPLSFGVSHLAPVLTEFAVRNPR 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+     D  IR+ + +  S+LI R++  I+    A+P YL     P 
Sbjct: 124 IELDVSFDDRRVDVLGGGFDVVIRIGE-LTDSTLIARRIGHINGMIVASPDYLSQKGMPQ 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVL 237
           +  +L + + + + ++ P  +    W   V+   GE R+  + V    ++   ++   V 
Sbjct: 183 TPDDLGQLDCLLYTNVAPGDV----WRFVVN---GEERMVRIPVRLRSDNGDMLLSAAVA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFC--YPEALKNTGKLKAFRNFIFL 292
           G G+A LP +I  +   +  +V I+ +  T   TV  C   P     T +++A  +F+ L
Sbjct: 236 GLGVARLPAFISSEAIASGQVVPILPEYNT---TVPLCAVMPPGRSRTARVRALVDFLAL 292

Query: 293 K 293
           +
Sbjct: 293 R 293


>gi|194364470|ref|YP_002027080.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347274|gb|ACF50397.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 303

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 139/300 (46%), Gaps = 9/300 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D + +R+   VA + SFT AA QL LSQS +SR I  LE  +G+KL  R+ R + LT 
Sbjct: 9   SMDLNAVRMLVQVAEARSFTVAAGQLGLSQSGLSRAIGRLEATLGVKLLQRNTRNVALTT 68

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +     S +   L+  + +L +    PSG L+I+     G+ +L   L   L  +P 
Sbjct: 69  DGRQFVEQVSPLLAGLDDAERQLADRPCTPSGTLKISAPSMFGRRVLVPLLGPLLQQHPQ 128

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++ +L ++ +D+  +  D A+R    I    ++ R L  +     A+P YL  C  P 
Sbjct: 129 LQVEAVLSDRLVDLVEEGFDAALRT-GTIADQRMVARPLKPLRWVTVASPEYLDRCGTPD 187

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  L  H  +   +L    + D+ +L     R +  P          L  ++  + G G
Sbjct: 188 DVAALQDHACLAVRNLRSGRLVDWQFLQDGQLREVTPPARMVFDCGDPL--VEAAISGIG 245

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  + D+ V D   +  L R+++     S  +   YP + +++ KL+   + +   A DW
Sbjct: 246 IVQVMDFAVADALADGRLQRVLQPFEGRSRALSLIYPPSRQHSPKLQVLADALL--AGDW 303


>gi|150395549|ref|YP_001326016.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027064|gb|ABR59181.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 293

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 138/290 (47%), Gaps = 11/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +RVF  VAR+G    A+++L ++ +++SR+++ LE  +  +L  R   G  LT +
Sbjct: 1   MNWDDVRVFLAVARTGQILAASKRLGVNHATLSRRVTALEATLKTRLLVRRPSGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q ++       +G +RI      G + L   L   +  YP++
Sbjct: 61  GEVFFAAAERMETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLMARYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL+   +   +S   AD AI + +P Q   L+  KL    +  YA+  YL     P +
Sbjct: 121 KLQLVPVPRSFSLSQREADIAITIERPEQ-GRLVSSKLTDYTLGLYASADYLAGHGTPRT 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +L KH  I +  DLI       N+ A V R       +  +++S     +     +GI
Sbjct: 180 VDDLKKHRRIGYVEDLI--FTPSLNFSAEVMRSWD----ASFEISSATGQTEAVRSSAGI 233

Query: 242 ALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +L +YI +  P L+R++ E  I  ++  +  Y E+ ++  +++   +F+
Sbjct: 234 GILHNYIARQYPELIRLLPETAIRRAY--WTTYHESARDLVRVRTAVSFL 281


>gi|311280536|ref|YP_003942767.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308749731|gb|ADO49483.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 298

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 132/277 (47%), Gaps = 13/277 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + ++L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTRAAARLGVSQSALSHAMKALEARLNLRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++    +    +LE     + + +   SG +R++      + LL   LK FL  +P I 
Sbjct: 65  ERVIACLAPRLDELERELENIVQLNGVISGNIRLSAGEHAARRLLWPKLKPFLQAWPQIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L++DN  +DI     D  +RL + +    +  R    + M A  +P Y      P + 
Sbjct: 125 IELVVDNGFVDIVDGRFDAGVRLGESVDKDMVAVRIGPDMRMAAVGSPGYFAARGIPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISC---LQVNSYLSIMQYCVLGS 239
            EL +H  I     +P     ++W    D   G+P R+     L  N     +   V G 
Sbjct: 185 HELQQHRCINM--RLPTAGGLYHWEFEKD---GKPLRVGVEGQLTFNLLAERVDAIVSGF 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           GI  +P+ +V+D      LVR++E    P+F  Y+ Y
Sbjct: 240 GIGFVPEDMVQDELRAGALVRVLES-WCPTFPGYYLY 275


>gi|227329235|ref|ZP_03833259.1| Regulatory protein, LysR family (Azotobacter vinelandii DJ)
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 298

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 142/285 (49%), Gaps = 9/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ + ++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSITLTAEGSLFLAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  ++EL ++   P G+LR+  ++ L  +L+   L EF+  YP+I++ L   
Sbjct: 69  SRRILAEIEAAELELSQTRAVPRGRLRV--SLPLVSSLVLPVLSEFMREYPEIELDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R   P+  S L  R+L        AAP YL     P    +L +H
Sbjct: 127 DRMVDVIEEGFDAVVRTGDPVD-SRLTARRLGAFRSLLVAAPDYLTRRGTPQIPVDLMQH 185

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +    P   +   W L         P  + +  N+  + + + + G GIA LPD+ 
Sbjct: 186 TCLHYR--FPSSGKLEPWALRLPPGEPELPLPTSMVCNNIETRLCFALQGLGIAYLPDFS 243

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++   + +L  I+ D +  S   Y  +P +   + K++A  +F+
Sbjct: 244 IREPLASGHLQPILTDYVERSGVFYVLWPASKHPSPKVRALVDFL 288


>gi|222086699|ref|YP_002545233.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724147|gb|ACM27303.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 305

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 139/298 (46%), Gaps = 23/298 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR GSFT A E+L ++Q+++S QI  LE  +G  LF R  R + LTE 
Sbjct: 14  FPLNALRVFEAAARLGSFTRAGEELGMTQTAVSYQIKLLEGNIGELLFLRKPRQIALTEA 73

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSG----KLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L    SE +         LQE+    SG     L I +T       L  ++  F L 
Sbjct: 74  GERLAPKVSEAFAL-------LQEAMASVSGDAETTLLIDSTPTFASQWLARHIGSFQLQ 126

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P++ ++L    K ID S D AD AIR  +      L    L+ I+     +P    +  
Sbjct: 127 HPNVAVRLATSGKLIDFSRDPADIAIRSGRGTW-PGLRAHLLMKINFTPMLSPELAASIG 185

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCV 236
                 +L K  +I  GD      E +   A V  P   G PR S L   S+ +     +
Sbjct: 186 GVHEPADLLKLRIIDAGD---PWWEQWFQAAEVPDPGLQGRPR-SRLGAQSFEA--SAAI 239

Query: 237 LGSGIALL-PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G G+A+L P++   D     L++  + + + S   +  YPE+ ++T +++AFRN+I 
Sbjct: 240 AGQGVAILTPEFYADDLAGGRLIQPFDILCSDSSDYWIAYPESRRHTPRIRAFRNWIL 297


>gi|86356379|ref|YP_468271.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280481|gb|ABC89544.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 293

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 139/291 (47%), Gaps = 13/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P++
Sbjct: 61  GEVFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P Q   L+  KL    +  YA+  YL     P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYTLGLYASRDYLAAHGRPGD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239
           ++ L  H  I +       +ED  + A+++   GE   S     ++++ +   +    G+
Sbjct: 180 VEALKAHPRIGY-------VEDLLFTASLNFS-GEVMRSWDAGFEISTAIGQTEAVRSGA 231

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +L DYI +  P L RI+ + I+     +  Y E  ++  ++++  +F+
Sbjct: 232 GIGILHDYIARQYPELQRILPE-ISIRRAYWTTYHETARDLVRVRSVVDFL 281


>gi|4928923|gb|AAD33772.1|AF139107_2 hypothetical transcriptional activator [Pseudomonas aeruginosa]
          Length = 306

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 140/289 (48%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +F  V    SFT AA+ L + +S++SR+I+ LE  +G++L  R  R L LTE G  
Sbjct: 4   DDALIFTRVVEYHSFTQAAQSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEVGQA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++ H     +  + +    PSG LRI + I+ GQ  L   L +F+  YP I  +
Sbjct: 64  YYERCRQIMHDFAEAEQAVMQLQQAPSGLLRITSPIEFGQMFLASLLGDFMRQYPQITAE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D   +  D  I + +P + S+L+ R+L++      A+P YL     P S+  
Sbjct: 124 VELASRSVDPLQEGVDIVIMVGQP-EDSTLVARRLLSTSRWLCASPDYLAAHGTPTSVAG 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +    L+    + + W  + D    +  +SC   N+     +  V G+GIA LP
Sbjct: 183 LAGHRAV----LLSTDSQRY-WPLSGDSLPCQRVLSC---NNITFAREAVVAGAGIAALP 234

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             I  +   +  LVR++ DV  P   +Y  YP       K+KAF +F+ 
Sbjct: 235 ALICAESVHSGRLVRLLADVPLPVGELYAVYPSRRFQAMKVKAFLDFLI 283


>gi|261819683|ref|YP_003257789.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261603696|gb|ACX86182.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 298

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 144/301 (47%), Gaps = 23/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F VV  +GS T AAEQL  + S ISR +  LE ++G  L +R  R L+L+
Sbjct: 1   MKVTLEELQAFVVVIETGSITAAAEQLGQTTSGISRALRRLEDKLGTTLLHRTTRRLSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+GS        V H +E  + ++     +PSG+LRI +     Q+++   + EF   YP
Sbjct: 61  EEGSMFLEHARGVIHAVEHAEEQVLLRHEQPSGRLRINSGSAFMQHVIVPLVPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+   + D AIR+   ++ S++  R L T  +H  A+P YL+    P
Sbjct: 121 KIVLELNTDDFIIDLLEQHTDIAIRI-GTLKDSTIHARPLGTSKLHIVASPDYLQQHGTP 179

Query: 181 LSIQELDKHNLITFGDL-------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            +++ L  H  + F          +   ++DF  +  V           L  ++   + Q
Sbjct: 180 KTVESLADHLCLGFTQSESLNHWPLRHGLQDFYTIKPV-----------LSASNGEILRQ 228

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             + G GI  +  ++++D+    R++    E+ +  S  VY  Y    +   ++  F +F
Sbjct: 229 LALQGEGIMRMSTFLIRDDLAAGRLVPILTEETVEASLPVYAVYYRNSQLAARITCFLDF 288

Query: 290 I 290
           +
Sbjct: 289 M 289


>gi|260769565|ref|ZP_05878498.1| putative transcriptional regulator LysR family [Vibrio furnissii
           CIP 102972]
 gi|260614903|gb|EEX40089.1| putative transcriptional regulator LysR family [Vibrio furnissii
           CIP 102972]
          Length = 293

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 122/247 (49%), Gaps = 9/247 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  SGSF+ AAE + +  + +SR +S LE ++GI +  R  R L LTE+G +
Sbjct: 6   DDLEILITVVDSGSFSQAAEVMDVQVAKVSRAVSRLELQLGITILNRTTRRLELTEEGKR 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +L   + ++      P GKLR+        + L   ++EF   YPDI ++
Sbjct: 66  FVESVRAGLQQLRQAEEDIVSRGELPKGKLRVDAASPFMLHQLVPLVREFHAAYPDIDLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    ++  A+P YL     P + QE
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LNDSTLHARPLGKSALYVVASPDYLAQRGFPTTPQE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+++ F    P+ +  +    T      EP I+C   +S  ++ Q  + G+GIA L 
Sbjct: 185 LHQHDIVGF--TAPRTLNIWPLNGT---EFIEPTIAC---SSGETVRQLVIAGNGIACLS 236

Query: 246 DYIVKDN 252
            ++VK++
Sbjct: 237 GFMVKED 243


>gi|221202040|ref|ZP_03575076.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221204829|ref|ZP_03577846.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175686|gb|EEE08116.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221178123|gb|EEE10534.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 304

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 137/281 (48%), Gaps = 13/281 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA +G FT AAE+L+L+ S++S+ ++ LE  +G+ LF R  R L LT+ G   +   
Sbjct: 15  FVCVADAGGFTAAAERLNLTNSAVSKSVARLERRLGVVLFERTTRSLVLTDAGRAFYETC 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  +L   +  L     +P G +RIA     G+  +   L  F   YPD++  L+  +
Sbjct: 75  TRILAELAEAEAVLAAQKREPVGTVRIALPASFGRLCVVPVLVRFSEQYPDVRPHLLFTD 134

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDKH 189
           + +D++ +  D A+R+  P      + R+L+      + AAP YL+    P +I +L +H
Sbjct: 135 RFVDLAEEGIDLAVRIGGPPGLPPSLGRRLLGRERLIFCAAPAYLEKNGIPQTIDDLQEH 194

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245
             I +G   P   +     A  D  + +    PRI      + L+ ++    G G+A L 
Sbjct: 195 ACIVYGR--PDGAQSLWSYAAADGQVEQCVVRPRIVAGDAEAQLAFVRA---GLGVAQLA 249

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            ++V+D+     LV I+++  T    +   +P A + T K+
Sbjct: 250 TWLVRDDLKAGRLVAILDEAATDGLPLSLIWPVARQLTPKI 290


>gi|323525151|ref|YP_004227304.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382153|gb|ADX54244.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 305

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE G+
Sbjct: 4   FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++   +  L      P G +R+ T+  L + LL   L +F   YP+I +
Sbjct: 64  LFYERCVRILAEVADAESSLSNKRENPVGTIRVDTSGTLARALLLPALDDFYRRYPEIDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +++ID+  D  DC IR+  P + SSL+ R++    +   A+P YL+    P ++ 
Sbjct: 124 RLGLADRNIDLIQDAVDCVIRMGTP-EESSLVARRIGHARIVTCASPAYLEKYGTPTTLD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  + +  +  +  + F +   V+  I +  + S L VN     ++   LG GI  
Sbjct: 183 QLSEHRAVNY--VSARTGKTFPFEYEVNGEIAKVAMKSVLAVNDGSVYIRAGALGHGIIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++V    +   L  I+ D  +P   +   Y      + +L+AF  ++
Sbjct: 241 PSRFMVAHLIERGVLKEILTDYTSPGTPLSILYAHRRNLSSRLRAFTEWV 290


>gi|299770757|ref|YP_003732783.1| putative HTH-type transcriptional regulator YcjZ [Acinetobacter sp.
           DR1]
 gi|298700845|gb|ADI91410.1| putative HTH-type transcriptional regulator YcjZ [Acinetobacter sp.
           DR1]
          Length = 295

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 147/291 (50%), Gaps = 34/291 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L+ F  V ++ +FT AA  + ++QS++S+ I+ LE ++GIKL  R  R LTLT
Sbjct: 1   MKINLNDLKTFSEVVKTKNFTKAAAYMGVTQSAVSQSINNLEAQLGIKLLNRSTRSLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQE-SSVK--PSGKLRIATTIDLGQNLLQGNLKEFLL 117
           E GS+L  +   V   +E   + +++ SS+K  PSG +RI+      +  L   LK+ + 
Sbjct: 61  EAGSRLIEL---VGQNIENIDLGIEQISSMKDLPSGHVRISADAFTIKYYLWPKLKKLVK 117

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAP 171
            YPDI ++L  +N+ IDI+ +  D  +R+       +L+++ L+ + +         A+P
Sbjct: 118 QYPDISLELTSENRRIDIAKEGYDAGVRV------GNLVEKDLIAVPISKEIPFRLIASP 171

Query: 172 HYLKNCREPLSIQELDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN 226
            YL+    P SI +L KH      L+T   L+    +D N       P+       L + 
Sbjct: 172 EYLEKYGTPQSIDDLKKHKGIYIRLLTDNSLMAWEFKDKNKSVFFRGPVQ------LVMT 225

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMED--VITPSFTVYFC 272
           S   ++   + G  +A LP ++VK   +   LV ++E   V  P F +++ 
Sbjct: 226 SLDEMLDAVLDGCAVAYLPYFLVKPALEEKKLVSLLEQHAVTLPPFYLFYT 276


>gi|241765568|ref|ZP_04763527.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241364628|gb|EER59671.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 318

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 144/290 (49%), Gaps = 20/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R++  V  +G+FT AA+ L L ++++++ +  LE  + +KL  R  R +T+T  G+  +
Sbjct: 7   MRIYVRVVEAGTFTRAADSLSLPKATVTKHVQALEERLRVKLLNRTTRRVTVTADGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +   L+  +  +  +   P G+LR+     + + L+  NL +F   YPDIQ+ L 
Sbjct: 67  ERTVRLLTDLDDIEASMTNARSNPRGRLRVDVGTGVARLLIIPNLAQFHARYPDIQVDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184
           + ++ +D+  D  DC IR  + +   SL+ R++  +     A+P YL+     + P+ I+
Sbjct: 127 VSDRVVDLIGDNVDCVIRGGE-LSDQSLVARRIGNLEFITVASPGYLERHGAPQHPIDIE 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              +HN + +     G   P  +E      ++D   G   +S  + N+YLS     + G 
Sbjct: 186 R--RHNSVIYFSPQSGRHYP--LEFRKGEESIDI-TGPYLVSVNESNAYLSA---ALAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+A +  +      D+ +LV+++ +   P   VY  YP     + K++AF
Sbjct: 238 GVAQITTFQATPYLDDGSLVQLLPEWSQPLLPVYVVYPPNRHLSAKVRAF 287


>gi|221200148|ref|ZP_03573191.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
 gi|221206699|ref|ZP_03579711.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221173354|gb|EEE05789.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221180387|gb|EEE12791.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
          Length = 322

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 140/292 (47%), Gaps = 19/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q+   KP+G LR+     LG+ L+  +L  F   YPDI + L 
Sbjct: 67  EHCVKILSEIAEADASFQKG--KPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPDITLDLG 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     AAP YL    EP  I +L 
Sbjct: 125 LSDRPVDPIEEGIDCMIRV-GPLEDSSMVARRIGMLRRVTCAAPDYLARHGEPREIADLA 183

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            H  + F     G  +P       W+  +D +P+     + + VN   + +   + G G+
Sbjct: 184 GHYAVNFRATQGGRAVP-------WVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFGM 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                ++V  N    +LV ++ D       +   YP     + K++ F ++I
Sbjct: 237 IQPTLFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWI 288


>gi|206577674|ref|YP_002237661.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206566732|gb|ACI08508.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 306

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 139/296 (46%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + +KL +R  R L +T  G+
Sbjct: 4   FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPDIQ 
Sbjct: 64  VYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPDIQF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  D  DC +R  + I   SLI R +  + +  Y APHY++    P   +
Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGE-ITDQSLIARHVGDLQIGVYVAPHYVERLGAPAHPR 182

Query: 185 ELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL    H ++ F     + ++    L +    I       L V+   + ++  + G G+ 
Sbjct: 183 ELQNTDHRIVGFVSSRSRKIDPL-VLRSESEQIEITGNYVLAVDDGNAYLEAGLAGLGVI 241

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT--------VYFCYPEALKNTGKLKAFRNFI 290
            LP Y+   +  +       + P FT        ++  +P      GKL+ F ++I
Sbjct: 242 ALPIYMAAAHQAV-----GALIPLFTQWRISPMPLHLAFPPNRHVNGKLRVFIDWI 292


>gi|126737988|ref|ZP_01753718.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126721381|gb|EBA18085.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 302

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 137/296 (46%), Gaps = 14/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD   L +F  VA  G+   A E+  LS ++ +++I  LE ++G KL  R  R ++LT
Sbjct: 1   MPFDLKSLELFVRVAALGALGRAGEEFRLSPTATTQRIQMLEADLGTKLLNRTTRAVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G         V   +E  +  +     + +G+LR+ T+   G++ +   + EFL  YP
Sbjct: 61  PDGELFLEHAQRVLDSVEEARAAVSTVKGRVTGELRVTTSASFGRSQIVPYIGEFLDQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L++  IDI     D AIR+   + SS+L+ RKL        A+P YL+    P
Sbjct: 121 DVTLKLDLNDSIIDIVEQGYDLAIRVGM-LNSSTLLARKLAPNPRLLVASPDYLERFGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
               +L  H  I  G       E  NW L      I E R+      N   ++    + G
Sbjct: 180 QQPSDLKSHRCIVLG-------ETRNWALKDEAGNITEVRVGGNFTTNFGEAVTDTTLQG 232

Query: 239 SGIALLPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI L   + + D+     L+R++    ++P + V+   P +     +++AF +F+
Sbjct: 233 MGIGLKSVWDISDHLKARRLIRVLPSHTVSPEWQVWAVRPASRTTPPRVQAFTSFL 288


>gi|17549690|ref|NP_523030.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431945|emb|CAD18622.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 297

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 125/274 (45%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR  SFT AA QL +S S++S  +  LET +GI+L  R  R ++ TE G
Sbjct: 5   NYHDLLAFLAVARERSFTRAAAQLGVSPSALSHTVRALETRLGIRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + +++     + E    PSG +RI TT    + LL   L + L  YPD++
Sbjct: 65  ERLLQSIAPRFEEIDAELAAIGELRDTPSGTVRITTTDYAIRTLLWPKLSKVLHDYPDVK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D    DI  +  D  +RL   +    +  R    + M    AP YLK    P + 
Sbjct: 125 VEFVTDYGLTDIVAERYDIGVRLGDTLAKDMIAARIAPDLRMVIVGAPAYLKRHPAPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W L    R I       L  N    I+   + G G+A
Sbjct: 185 QDLTAHRCINL--RLPTRGGVYAWELKKGQREIQVRVDGQLTFNGVYEILDAALSGYGLA 242

Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273
            +P+ + + +    R   ++ED   P+F  Y  Y
Sbjct: 243 YMPEDLAQPHVAAGRLKWVLEDWF-PTFPGYHVY 275


>gi|187928558|ref|YP_001899045.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725448|gb|ACD26613.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 308

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 135/295 (45%), Gaps = 18/295 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT+ G  
Sbjct: 7   EAMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQLTQDGQT 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   ++  Q   ++S     G+LR+   + + + ++   L   L  +P+++I+
Sbjct: 67  FYERCQDLLADMDELQTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAHPELEIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D   +  DC +R+   +  SSLI R L  +H    A+P Y+     P ++ E
Sbjct: 127 LSSTDRRVDPVREGFDCVLRI-GALTDSSLIARPLGQLHQVNCASPAYIARYGMPRTLDE 185

Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LD+H ++    T G   P       W  TVD R    P    + V+S  S    C  G G
Sbjct: 186 LDRHRIVHYVQTLGTKSP------GWEYTVDGRSAFRPMKGAVTVSSAESYDAACRAGLG 239

Query: 241 IALLPDY-----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   P Y      + D   L+ +M D   P   V   YP       +++ F N++
Sbjct: 240 MIQAPVYAGLSSAIADG-TLIDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWM 293


>gi|71280356|ref|YP_269246.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71146096|gb|AAZ26569.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 301

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 138/292 (47%), Gaps = 17/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  +A + + + A   L LS +  S  I+ LE  +GI+L +R  R ++LTE+G  
Sbjct: 4   EHLKLFLRLAATNNISQAGNDLGLSPAVASAHINKLEQGLGIRLVHRTTRKVSLTEEGET 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   +ET +  +      P G+LRI      G+  +   +K FL LYPDIQ+ 
Sbjct: 64  FLPHAEEVISSIETARASVGVGQASPKGRLRITAPASFGRMHIVSAMKGFLSLYPDIQVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+     D AIR    ++ S+LI RKL         +P YLK   EP S Q+
Sbjct: 124 IRLTDNIVDLVEGGFDIAIR-DAELKDSTLIARKLSPDKRIICVSPDYLKKFGEPNSPQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H  +    L         W+   D P G   I      + ++  ++   CV G GIA
Sbjct: 183 LRDHQCVILNGL-------ETWV--FDTPAGHINIKPKGNFRTDNGEAMRDACVDGLGIA 233

Query: 243 LLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   + V     +  LV+I+++  +  +  ++  YP +     K++AF +++
Sbjct: 234 MNATWSVYRHLQSGELVQILKEYPLISNAAIWAVYPSSRLLAPKVRAFIDYL 285


>gi|290508738|ref|ZP_06548109.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289778132|gb|EFD86129.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 306

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 139/296 (46%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + +KL +R  R L +T  G+
Sbjct: 4   FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPDIQ 
Sbjct: 64  VYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPDIQF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  D  DC +R  + I   SLI R +  + +  Y APHY++    P   +
Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGE-ITDQSLIARHVGDLQIGVYVAPHYVERLGAPAHPR 182

Query: 185 ELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL    H ++ F     + ++    L +    I       L V+   + ++  + G G+ 
Sbjct: 183 ELQNTDHRIVGFVSSRSRKIDPL-VLRSESEQIEITGNYVLAVDDGNAYLEAGLAGLGVI 241

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT--------VYFCYPEALKNTGKLKAFRNFI 290
            LP Y+   +  +       + P FT        ++  +P      GKL+ F ++I
Sbjct: 242 ALPIYMAAAHQAV-----GALIPLFTQWRISPMPLHLAFPPNRHVNGKLRVFIDWI 292


>gi|224584690|ref|YP_002638488.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469217|gb|ACN47047.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 310

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 13  RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 73  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 133 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 187 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 241

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 242 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 297


>gi|152968797|ref|YP_001333906.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262044058|ref|ZP_06017138.1| contact-regulated protein A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330005763|ref|ZP_08305375.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150953646|gb|ABR75676.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|259038630|gb|EEW39821.1| contact-regulated protein A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328536131|gb|EGF62519.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 301

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 144/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++ +F  V  SGSF+ AAEQL  + S++SR +  LE+++G+ L  R  R L+LT
Sbjct: 1   MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + +L E+   P G LR+     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRMQVVLQEMAAAENDLLETRTTPRGLLRVDAATPVMLHFLMPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIVASPDYVARYGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               +L +H+ + F +  P  +    W ++  D  + E   + +  NS  ++ Q C+ G+
Sbjct: 180 QHPSDLKQHHCLGFTE--PVSLN--TWPVSCCDGQLLEIE-AAVSSNSGETLKQLCLTGN 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L DY+V     +   V ++ D   P    F+  +    A+    +++AF +F+
Sbjct: 235 GIACLSDYMVDKEIASGEFVELLADKRLPVEMPFSAVYYSDRAVST--RIRAFIDFL 289


>gi|315300274|gb|EFU59510.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
          Length = 308

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G  L+ V 
Sbjct: 15  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 75  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244

Query: 239 SGIALLPDYIVKDNPNLVR---IMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N  +   I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 245 TGIIQHLDFAIAEHINASKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302


>gi|288959528|ref|YP_003449869.1| HTH-type transcriptional activator [Azospirillum sp. B510]
 gi|288911836|dbj|BAI73325.1| HTH-type transcriptional activator [Azospirillum sp. B510]
          Length = 296

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 131/282 (46%), Gaps = 8/282 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V R GS + AA  L L+Q +++R ++ LE  VG  LF R  RGL  T+   
Sbjct: 8   WDLYRSFLAVVREGSLSAAARALGLTQPTLARHVAALEEAVGGSLFLRSPRGLAPTDAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                +  G +R+  +  +G  +L   L +    +P ++I
Sbjct: 68  ALLPQAEALEAAAAGLWRTASGWGAEVRGTVRVTASEVVGARILPAILADLRHRHPALEI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQR-KLVTIHMHAYAAPHYLKNCREPLSI 183
           +L+L N   D+    AD A+R+ +P Q + +++R  ++ + MHA+    YL     P   
Sbjct: 128 ELVLSNAVDDLLQRDADVAVRMVEPDQQALVVRRVGIIALGMHAHR--DYLVRHGSPRHP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+LI F    P    D   +      +  PR + L+ +S+L+ +     G GI +
Sbjct: 186 ADLGRHSLIGFDRETP----DIRAMIRRAPAVALPRFA-LRSDSHLAQLAAIEAGFGIGI 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
               + + NP+LVR++ D       ++    E L++T + +A
Sbjct: 241 CQVPLARRNPDLVRVLADAFDMPMGMWVAMHEDLRSTPRCRA 282


>gi|170740705|ref|YP_001769360.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194979|gb|ACA16926.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 307

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 128/265 (48%), Gaps = 8/265 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R    V R+G+ + AA  L +  +++ R+I  LE ++G +LF+R A G   T+ G 
Sbjct: 9   WDDYRFALAVFRAGTVSAAARLLGVDHATVIRRIDRLERQLGERLFHRRASGYVATQAGQ 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +      V   +   Q  +  S+ + +G +RI      G   L   L   +  +PD+ I
Sbjct: 69  AVAATADAVESAIINGQSLVGRSAARLTGTVRIGAPDGFGSTFLAPRLTGLVERHPDLDI 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL+   +   +S   AD AI L  P +   ++ RKL    +  YAAP YL+      S +
Sbjct: 129 QLVATARLFSLSKREADIAIGLSLP-REGRIVGRKLTDYALKLYAAPSYLRAAPPIESRR 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H  + + + +    E  ++L  V   IG    + L+  + ++ +     G G+A+L
Sbjct: 188 DLERHRFVGYIEELLYTPE-LDYLRQVSSGIG----ARLRSANVIAQLHAVAAGIGLAVL 242

Query: 245 PDYIVKDNPNLVRIM--EDVITPSF 267
           P ++    P+LV ++  E V+T SF
Sbjct: 243 PCFMAAGRPDLVCVLPREVVLTRSF 267


>gi|262194735|ref|YP_003265944.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262078082|gb|ACY14051.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 296

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 10/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF+ AA  L + QS++S+ I+ LE E+  +L  R  R   +TE G + ++ 
Sbjct: 9   AFVRVVELGSFSAAAADLRVEQSTVSKWIAALEDELAARLIDRTTRQRRVTEAGQRFYQR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+         E+Q+   +P G+LR++  +  G+  +      FL  YP++++ L + 
Sbjct: 69  AREIATSYAAAAAEVQDDE-RPRGRLRVSAPVVFGRLFVVPAAVRFLRRYPEVELDLRMS 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D A+R+  P+  SSL  R L     H  A P YL  C  P   ++L  H
Sbjct: 128 DRYVDLVEGGFDLAVRVGAPLD-SSLRARTLARSRRHLVATPRYLARCGTPERPRQLSVH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             +    L P     F   +   R     R +     + L++ +  +   G+A+L D++V
Sbjct: 187 ACLVHSGLAPGSPWVFRRGSRTQRVRVSARFAADNSEALLAMARASL---GVAVLADWLV 243

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
               +   LV ++ +   P+  V        + T  ++AF + +  FL AR
Sbjct: 244 ARDLERGRLVSLLPEYELPAAPVQALSAPGRRATPTVRAFADVLADFLAAR 294


>gi|86751602|ref|YP_488098.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86574630|gb|ABD09187.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 304

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 11/252 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF   A +L LS++++S+ ++ LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEALAIFAKVVELRSFAATAAELALSKATVSKAVTRLEARLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +++    E  + E    S  P G +R+A  +  G  ++   L +FL  YP++ 
Sbjct: 66  QRLAERAAQLLADGEAAESEALAQSAAPRGLVRLAVPMTFGVKVIAPLLPDFLAAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D  +R+   +  SSL+ R+L  +  +  A+  YL     P   
Sbjct: 126 IDLHLSDAMVDLIGEGFDAGVRIAS-LPDSSLVARRLCAMPRYTVASKAYLAQHGRPTHP 184

Query: 184 QELDKHNLITFGDL-IPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             L  H    +  L  P      N     A+V RP G      L+VN+  +++   + G 
Sbjct: 185 MHLAAHRCFGYAYLSTPNVWTYTNAEGEQASV-RPSGP-----LRVNNGEAVLPAVIAGL 238

Query: 240 GIALLPDYIVKD 251
           GIA LP++IV D
Sbjct: 239 GIADLPEFIVGD 250


>gi|26246309|ref|NP_752348.1| LysR family transcriptional regulator [Escherichia coli CFT073]
 gi|91209363|ref|YP_539349.1| putative LysR-like transcriptional regulator [Escherichia coli
           UTI89]
 gi|117622573|ref|YP_851486.1| putative LysR-like transcriptional regulator [Escherichia coli APEC
           O1]
 gi|191173547|ref|ZP_03035073.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|218557215|ref|YP_002390128.1| LysR family transcriptional regulator [Escherichia coli S88]
 gi|237707713|ref|ZP_04538194.1| LysR family transcriptional regulator [Escherichia sp. 3_2_53FAA]
 gi|306813222|ref|ZP_07447415.1| putative LysR-like transcriptional regulator [Escherichia coli
           NC101]
 gi|331656359|ref|ZP_08357321.1| transcriptional regulator, LysR family [Escherichia coli TA206]
 gi|26106707|gb|AAN78892.1|AE016756_75 Putative LysR-like transcriptional regulator [Escherichia coli
           CFT073]
 gi|91070937|gb|ABE05818.1| putative LysR-like transcriptional regulator [Escherichia coli
           UTI89]
 gi|115511697|gb|ABI99771.1| putative LysR-like transcriptional regulator [Escherichia coli APEC
           O1]
 gi|190906142|gb|EDV65755.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|218363984|emb|CAR01649.1| putative LysR-like transcriptional regulator [Escherichia coli S88]
 gi|226898923|gb|EEH85182.1| LysR family transcriptional regulator [Escherichia sp. 3_2_53FAA]
 gi|294492910|gb|ADE91666.1| transcriptional regulator, LysR family [Escherichia coli IHE3034]
 gi|305853985|gb|EFM54424.1| putative LysR-like transcriptional regulator [Escherichia coli
           NC101]
 gi|307628224|gb|ADN72528.1| putative LysR-like transcriptional regulator [Escherichia coli
           UM146]
 gi|312944887|gb|ADR25714.1| putative LysR-like transcriptional regulator [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|323958721|gb|EGB54422.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
 gi|331054607|gb|EGI26616.1| transcriptional regulator, LysR family [Escherichia coli TA206]
          Length = 329

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G  L+ V 
Sbjct: 36  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 95

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 96  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323


>gi|110640568|ref|YP_668296.1| lysR family transcriptional regulator [Escherichia coli 536]
 gi|227884692|ref|ZP_04002497.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|300977337|ref|ZP_07173828.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|300977377|ref|ZP_07173866.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|301045912|ref|ZP_07193098.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|110342160|gb|ABG68397.1| putative lysR-family transcriptional regulator [Escherichia coli
           536]
 gi|222032110|emb|CAP74849.1| LysR-like transcriptional regulator [Escherichia coli LF82]
 gi|227838293|gb|EEJ48759.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|300302088|gb|EFJ58473.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300308329|gb|EFJ62849.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|300409862|gb|EFJ93400.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|307552214|gb|ADN44989.1| putative LysR-like transcriptional regulator [Escherichia coli ABU
           83972]
 gi|315287779|gb|EFU47182.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|315295129|gb|EFU54464.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
 gi|323953081|gb|EGB48949.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|324010887|gb|EGB80106.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
          Length = 308

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G  L+ V 
Sbjct: 15  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQHLYEVL 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 75  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSNVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302


>gi|319793808|ref|YP_004155448.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596271|gb|ADU37337.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 308

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 7/286 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           V   V   GSF  AA  L L+ S +SR I+ LE  +G++LF R  R L LT++G  L+  
Sbjct: 13  VLAAVVEGGSFASAANALGLTPSGVSRAIARLEARIGVRLFDRTTRSLNLTDEGRLLYAN 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + +   +E        +S    G+LR+ T     + LL  +L  FL  YP++ + L+  
Sbjct: 73  VNPLVLGIEDAVTIAAGASGAVRGRLRVNTDAFTSRLLLAPHLPRFLDQYPELSLDLVAR 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+  +  D A+R  +P  SSSL+ RKL+   +   A P YLK    P    +L  H
Sbjct: 133 DQLGDLVAEGFDIAVRFGEP-PSSSLVARKLMDTRIVTVATPAYLKRHGRPAKPADLVNH 191

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             +   +  P   + + W     R + + P    L +    +I+   + G G+A +    
Sbjct: 192 ACLQVRN--PVTGQPYTWEFQRGRKLVKVPTTGRLLLTDAGTILATALAGVGVAQIKAVG 249

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++   D+   V +  D     F +Y  YP       K++AF +F+ 
Sbjct: 250 IQQHLDSGEFVDLFPDWPDERFPLYALYPSRHLPAAKVRAFIDFVM 295


>gi|172063631|ref|YP_001811282.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996148|gb|ACB67066.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 299

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 137/292 (46%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +F  AA++L ++Q ++++Q+  LE  V ++LF R  RGL LT +G +
Sbjct: 14  NALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDVVAVQLFRRLPRGLALTREGLE 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S V   L+           +P+  L ++TT       L   L +F  L+PDI+++
Sbjct: 74  YF---SSVQRALQIISDATDALGQRPT-VLAVSTTPSFASKWLIPRLTDFGRLHPDIEVR 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D +      D  D AIRL KP   + L    L  + + A A+P  L +     +  +
Sbjct: 130 VIADERLASFRADGVDIAIRLSKPPFPAGLAAELLAPLDIFAVASPKLLDSGPPIRTPAD 189

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    DL P+ +E        D P   PR S     S L+I    V G GIAL 
Sbjct: 190 LSMHALLHDAHDLWPEFLEKLGGTGQAD-PTKGPRFS----QSLLAI-DAAVAGQGIALT 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + +V+ +     L R+ +     S   Y  +P+A  ++  L+A R ++F +
Sbjct: 244 GEPLVERDIAEGRLRRVFDFSFPMSLGFYVVFPQANAHSEALQAMRRWLFAQ 295


>gi|107026220|ref|YP_623731.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692595|ref|YP_838128.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105895594|gb|ABF78758.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650595|gb|ABK11235.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G +  
Sbjct: 10  LHVFMTVATAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
           R T   Y ++   + EL+++  +P+G LR+ T + L + L+    L  F   YP +++++
Sbjct: 70  RQTEPAYRQVMQARDELKDARSEPNGLLRV-TALPLARLLVIAPVLATFRERYPKVRLEI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             DN+ +DI+ D  D  IRL   +Q   +  R    +     A+P YL     P SI  L
Sbjct: 129 RYDNELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPAYLARHGTPESIAAL 188

Query: 187 DKHNLITF 194
            +H  I F
Sbjct: 189 GRHACIRF 196


>gi|291281194|ref|YP_003498012.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. CB9615]
 gi|290761067|gb|ADD55028.1| Putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. CB9615]
 gi|320638573|gb|EFX08281.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. G5101]
 gi|320644034|gb|EFX13114.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H- str. 493-89]
 gi|320649316|gb|EFX17867.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H- str. H 2687]
 gi|320656880|gb|EFX24740.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320662457|gb|EFX29846.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665273|gb|EFX32363.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 329

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++ +++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 36  FALIVRAGSFSRAASEMGITLAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYEVL 95

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 96  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSKVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323


>gi|260778271|ref|ZP_05887164.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606284|gb|EEX32569.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 296

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 136/288 (47%), Gaps = 12/288 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  + +F    R+GS   AA  L++S S+I+R+I+ LE  +G+ LF +   G TL+ +
Sbjct: 1   MDWSDVAIFLQTMRAGSARSAAASLNVSHSTITRRIASLEKSLGVSLFRKDTSGYTLSPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +    L   +IEL+    K SG++RI T   +  +LL   +  F   YPDI
Sbjct: 61  GESLQRYAEQAEMSLRQAEIELKGKDAKYSGEIRITTADAIANHLLMPTIAMFSQQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQ--SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
             +++L ++ +D+     D A+R+    Q     L+ R +  I +  YA PHYL+     
Sbjct: 121 NAEVVLSSQVLDLGDHEVDIALRIMPMNQMPPEHLVGRIIGKIAICYYATPHYLEQHDPW 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +S        LI +G+L  K    FN     D P+    ISC   +S +  ++      G
Sbjct: 181 MSDSSA---QLIGWGEL-GKESPIFN-----DSPLRHLSISCRMNHSAMQ-LEAAKQSMG 230

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           I LLP +I    P LVR+ +        ++       +   +L+AF+ 
Sbjct: 231 ITLLPCFIADKEPTLVRVPKCEPEIKHDIWMLSKSEQREVARLRAFKE 278


>gi|260753525|ref|YP_003226418.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552888|gb|ACV75834.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 331

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A + SFT A +QL +S S+I + I+ LE  +G++LF+R  R +TLT +G   
Sbjct: 6   SLNAFVHAAEARSFTTAGKQLGVSSSAIGKAIARLEGRLGVRLFHRSTRTITLTPEGGLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 ++ ++E  ++E+ ++   P GKLRI  ++ L   L+   +  F+ L+P+I++ L
Sbjct: 66  LERCRRIFSEVEAAELEISQTRGAPHGKLRI--SLPLVGMLMMPTISAFMRLWPNIELDL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  D  IR  + I  S L+ R L + +     +  Y      P +  +L
Sbjct: 124 DFTDRLVDVIDEGFDAVIRTGE-INDSRLMTRMLGSFNYQLVGSADYFAEHGVPETSADL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLP 245
             H  +         +ED  W   V        +  + V+S +  + Y    S GIA LP
Sbjct: 183 IAHRCLRHRYPSTGKLED--WPLIVRSNDTAVELPTVAVSSAIEPLVYMAERSLGIACLP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D+ V++      L+ +ME+ +  S T    +P + + + K++ F +F+
Sbjct: 241 DFAVREQVQTGTLISVMENAVCHSGTFRILWPSSRQLSPKIRVFVDFV 288


>gi|167563227|ref|ZP_02356143.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167570408|ref|ZP_02363282.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 300

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 134/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LR++     G+  +   +  F   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ +L
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGTPETLADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWAFVDDGKVVSIRVSGTMECSDGAVLHEWCLDGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGADIAGSRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|260549466|ref|ZP_05823685.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407575|gb|EEX01049.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 295

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 146/291 (50%), Gaps = 34/291 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L+ F  V ++ +FT AA  + ++QS++S+ I+ LE ++GIKL  R  R LTLT
Sbjct: 1   MKINLNDLKTFSEVVKTKNFTKAAAYMGVTQSAVSQSINNLEAQLGIKLLNRSTRSLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQE-SSVK--PSGKLRIATTIDLGQNLLQGNLKEFLL 117
           E GS+L  +   V   +E   + +++ SS+K  PSG +RI+      +  L   LK+ + 
Sbjct: 61  EAGSRLIEL---VGQNIENIDLGVEQISSMKDLPSGHVRISADAFTIKYYLWPKLKKLVK 117

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAP 171
            YPDI ++L  +N+ IDI+ +  D  +R+       +L+++ L+ + +         A+P
Sbjct: 118 QYPDISLELTSENRRIDIAKEGYDAGVRV------GNLVEKDLIAVPISKEIPFRLVASP 171

Query: 172 HYLKNCREPLSIQELDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN 226
            YL     P SI +L KH      L+T   L+    +D N       P+       L + 
Sbjct: 172 EYLDKYGTPKSIDDLKKHKGIYIRLLTDNSLMAWEFKDKNKSVFFRGPVQ------LVMT 225

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMED--VITPSFTVYFC 272
           S   +    + G  IA LP ++VK   ++  LV ++E   V  P F +++ 
Sbjct: 226 SLDEMFDAVLDGCAIAYLPYFLVKPALEDKKLVSLLEQHAVTLPPFYLFYT 276


>gi|254450985|ref|ZP_05064422.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198265391|gb|EDY89661.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 298

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 139/289 (48%), Gaps = 15/289 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +  SGSF  AA +L +S  +++R ++ LE  +G++L  R  R L+LT+ G++  
Sbjct: 1   MEVFAAINDSGSFVQAANRLRMSPPAVTRAMNALEDRLGVQLLTRSTRQLSLTDPGTRFL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +  ++E  + +         G L ++ ++   + +    ++EFL  +P I + L+
Sbjct: 61  DSSRRLLSEIEAAEKQAVGEIGVAQGHLTVSASMTFSRMIAAPVVREFLAAHPRISVSLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  ++  +  D A+R+   +  S+L+ ++L  +     A+P YL+ C  P    +L 
Sbjct: 121 ALDRVANLVEEGIDVAVRIGG-LPDSNLMAKRLGNVRRLFVASPAYLERCGVPTEPSDLK 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H++I F       M   +W    +   G     PR   L+VN   + +     G GI L
Sbjct: 180 THSIIGFTG----TMSSHDWHYKTESQRGHVQLHPR---LEVNDASTALTAASDGEGITL 232

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              Y+V +   N  LV ++ + + P+  ++  YP++     K++AF  F
Sbjct: 233 ALSYMVAEQVRNGELVPVLSEFLPPAEPIHLVYPQSKLVAPKVRAFLEF 281


>gi|77165387|ref|YP_343912.1| LysR family transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|254433400|ref|ZP_05046908.1| LysR substrate binding domain protein [Nitrosococcus oceani AFC27]
 gi|76883701|gb|ABA58382.1| transcriptional regulator, LysR family [Nitrosococcus oceani ATCC
           19707]
 gi|207089733|gb|EDZ67004.1| LysR substrate binding domain protein [Nitrosococcus oceani AFC27]
          Length = 307

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 143/303 (47%), Gaps = 16/303 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V  +GSF+ AA ++  S+S++S+ ++ LE  +G +L  R  R L+LTE G
Sbjct: 3   DLNLMAIFARVVEAGSFSEAARRMETSRSAVSKAVAKLEKNLGARLLNRSTRHLSLTESG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    + +  + E  +  +     +P G LR++ ++  G   +   L +F+  YPDI+
Sbjct: 63  AALVEYAARILEEAEQAEQVVSSLHAEPRGMLRVSASVAFGTLHIAPALADFVARYPDIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + + ++ +D++ +  D  IR+       +L+ RKL  ++    A P Y +    P   
Sbjct: 123 IDMAITDRPVDLAEEGYDMIIRVTGE-PDLNLVARKLAPVYRKLCATPEYFQQHGIPQIP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSG 240
           ++L  H+ + +        E   W  T   P GE   P    L++N   ++ Q    G G
Sbjct: 182 EDLVNHDCLDYT----LSGEQGYWHFT--GPEGEIAVPVSGPLRINDDDALAQAVRGGLG 235

Query: 241 IALLPDYIV-KD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           IALLP + V KD     L  ++ + +     VY  Y        K++ F +F+   F   
Sbjct: 236 IALLPTFTVGKDLQEGRLQAVLSEYLPVKRYVYALYLPTRHLAAKIRVFIDFLLTRFGPE 295

Query: 295 RDW 297
            DW
Sbjct: 296 PDW 298


>gi|50121897|ref|YP_051064.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612423|emb|CAG75873.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 296

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 101/180 (56%), Gaps = 1/180 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S DW+ LR F  VAR+ S T  A +L +SQS++SR+I  LE+ +  +LF  H  G  LT
Sbjct: 4   ISMDWNDLRFFLEVARTSSLTKTAIKLKVSQSTVSRRIGALESSLKTRLFLHHQTGYFLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G ++ +   +V  K+ T + ++    + P+G +R+AT + L  +L+   L  F+  YP
Sbjct: 64  DVGKEVLKYAEDVEGKVGTLEKKISGRDLAPAGIVRLATAVTLANHLIIPQLPRFMACYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L+     + +  + AD A+RL +P Q+S  I RK+  +    Y +  Y++    P
Sbjct: 124 EIILELVTGVNTVSVVRNDADIALRLVRPEQNSLKI-RKVGVVASAVYGSETYVREHPAP 182


>gi|313669077|ref|YP_004049361.1| lysR-family transcriptional regulator [Neisseria lactamica ST-640]
 gi|313006539|emb|CBN88003.1| putative lysR-family transcriptional regulator [Neisseria lactamica
           020-06]
          Length = 299

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 138/298 (46%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S+ISR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAISRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEVPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVVASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S +EL  H  + F +         N  A +D      +IS     S   I++  C+ G 
Sbjct: 180 QSTEELAGHQCLGFTE-----SGSLNTWAVLDAQGNPYKISPHFTASSGEILRLLCLSGC 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++V ++       P L     D   P   VY  Y +   N  +L+ F +F+
Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFV 289


>gi|311107332|ref|YP_003980185.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310762021|gb|ADP17470.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           137 [Achromobacter xylosoxidans A8]
          Length = 302

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 133/288 (46%), Gaps = 7/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L  F     SGSF  A  +L LS S+  + +  LE  +G++L +R  R L  T +G 
Sbjct: 10  FSGLVAFAATVESGSFAAAGRKLGLSASAAGKAVERLELRLGVRLLHRTTRSLGPTGEGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+R  +++   L+  + EL      P G+L+I+    +G+ ++   L EF L +P++ +
Sbjct: 70  VLYRHVAKILKDLQEAERELHLVQNAPRGRLKISVPTVMGRRIVLPALSEFHLSFPEVLV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + LD+  +D+  D  D A+RL + +  S L  R++        A+P YL     P +  
Sbjct: 130 DINLDDLIVDVIEDGYDLALRLGE-LADSGLQARRIGPHGFTTCASPAYLAQRGTPRTPA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I +    P       W    ++P  +P      +N   ++    + G GI  +
Sbjct: 189 DLSGHCCIYY--RFPTTGRPETWAFKGEQP-DKPLKPSGILNDGEALASAAISGLGIVQV 245

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P+Y+VKD+     L  ++ED      +V   +        +++AF +F
Sbjct: 246 PNYLVKDDVEAGRLTPVLEDYTDSRGSVSLLWAPRSAEVARVRAFIDF 293


>gi|317053276|ref|YP_004119043.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953015|gb|ADU72487.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 298

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 142/287 (49%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S+I + +  LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVQVAETRSFVAAGRLLGVSASAIGKSVVRLEEKLGVRLFHRSTRSVTLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  Q+EL +++ +PSG+LR+  ++ L   L+   L  F+  YP I++ L   
Sbjct: 69  SRRILAEIEAAQLELSQATSEPSGRLRV--SLPLVSPLMLPVLAAFMRAYPKIELDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R   P   S L  R+L T      A+P YL     P    +L  H
Sbjct: 127 DRLVDVIEEGFDAVVRTGDP-ADSRLSARRLGTFRSLLVASPDYLAQRGTPHKPADLLDH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W+   D    EPR+   + +  N+  + + + + G GIA LP+
Sbjct: 186 TCLHY--RFPNSGKLEPWVLRHD--ADEPRLMVPTSMICNNIETRVCFALQGLGIAYLPE 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++      L  ++ +    +   +  +P +   + K++AF +F+
Sbjct: 242 FAIREPLAEGRLCAVLSEYAERTGVFHVLWPASKHPSPKVRAFVDFL 288


>gi|218677238|ref|YP_002396057.1| Transcriptional regulator [Vibrio splendidus LGP32]
 gi|218325506|emb|CAV27692.1| Transcriptional regulator [Vibrio splendidus LGP32]
          Length = 304

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 1/183 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  V  SGSF+ A   L+++ SS++R I  LE+++   LF R  R L LTE+G   H
Sbjct: 5   IKIFDQVVESGSFSQAGRALNMAPSSVARNIDNLESKIKSSLFKRSTRQLMLTEEGQYFH 64

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + ++++         E+Q     P G LR++     G   L   + EFL  YP IQ++L 
Sbjct: 65  QQSAKILQDSNRLLEEMQGDQGPPEGVLRVSVFESFGNLCLTPLIPEFLERYPKIQVELE 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN  +D++ +  D AIR+  P Q S L  R L+T +    AAP Y++        +EL 
Sbjct: 125 LDNNVVDLNSENIDVAIRIGTP-QDSRLKARNLLTNNASLVAAPSYIEKYGTIDKPEELQ 183

Query: 188 KHN 190
            HN
Sbjct: 184 DHN 186


>gi|332305867|ref|YP_004433718.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173196|gb|AEE22450.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 302

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 14/294 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +  FTHAAE ++  +S ISR I  LE  + ++L  R  R   +TE G + +R  
Sbjct: 9   FVKVVENKGFTHAAEMINSPKSKISRHIKKLEERLDMRLIQRTTRHFVVTEAGWEFYRHA 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            +V +++E  +  +++     SGK+ I+ ++ +  + +   +  FL  YPDI+I+  + N
Sbjct: 69  KKVVNEVELAENIVKKRRGTLSGKVNISCSLGVSNHFMPSLISAFLKQYPDIEIRQQVSN 128

Query: 131 KDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
             +DI     D  IR   K +  SSLIQ+ L  +    +A+P +L      L+  +L   
Sbjct: 129 DYVDIISKGLDMVIRGHEKNLPDSSLIQKHLAQVEWCLFASPAFLTQTMPILAPNDLQGI 188

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245
             + FG       ++ +W   + R  GE    P +     +   ++   C+ G G+  LP
Sbjct: 189 KALGFG------WKNDSWTWNLTRYDGEKAEVPHLPIFSSDDMSALKTACIDGLGVVSLP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            Y+ K   D+  LVR++    + S  +    P       +++ F +F+ + A++
Sbjct: 243 GYVCKKEVDDGQLVRVLPQWHSRSAALSIIIPSRKGVLAEVRTFIDFLQINAQE 296


>gi|239501455|ref|ZP_04660765.1| transcriptional regulator [Acinetobacter baumannii AB900]
          Length = 300

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 13/222 (5%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA   S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR +  + +S+LI R L    +   A+P YLK  
Sbjct: 121 KYPDIQIEISISNRNVDLIAEGFDLAIR-QGQLPNSTLIARPLEQAPLKLVASPAYLKRM 179

Query: 178 REPLSIQELDKHNLITF-----GDLIPKCM----EDFNWLAT 210
             P + +EL  H  ITF     G + P  +    E+  W+ T
Sbjct: 180 GIPKNFEELKHHQCITFELPSSGKITPWFLKNDNEEIQWIPT 221


>gi|237808088|ref|YP_002892528.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500349|gb|ACQ92942.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 300

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 137/288 (47%), Gaps = 8/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L++F V+A++GSFT A+  L +S S++S  I  LET +G +LF R  R + LTE G
Sbjct: 5   NLNDLQLFLVIAKAGSFTKASALLGVSPSALSHSIKALETRMGFRLFNRTTRSIALTETG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L  +     ++LE     L ES  + +G +RI  +      +L   L+ F+  YP+I 
Sbjct: 65  EQLFGIIEPKLNELEREMQGLHESHNRLTGNIRITASEHAASAILSPLLESFIPQYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ ++N  +DI  D  D  IRL + ++   +  R    + M A A+P Y     +P + 
Sbjct: 125 IEVSVNNGFVDIVNDRFDGGIRLGEYLEKDMVAVRVGPDVRMLAVASPDYFAKHPKPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  H+ I     +      + W    +    + ++S  L  NS   I    + G GIA
Sbjct: 185 YDLQNHSCINL--RLSHQGGIYTWEFEQEGKETKVKVSGQLTFNSVSLIKNAALHGLGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAF 286
            L +  V D   N  LV + E    P F+  +  YP A ++      F
Sbjct: 243 YLAEDFVADDIQNGRLVSVCE-TWCPYFSGFHLYYPSAKQHKPAFAKF 289


>gi|221199797|ref|ZP_03572840.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221207534|ref|ZP_03580543.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221172737|gb|EEE05175.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180036|gb|EEE12440.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 320

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 144/298 (48%), Gaps = 22/298 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ +++ 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAERFPDVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YLK    P ++ +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHILLVASPEYLKKHGTPETLADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-------LQVNSYLSIMQYCVLGS 239
            +HN +           D N  +T+D  + +   +        L VN    +    + G+
Sbjct: 187 ARHNYLR---------RDSNA-STLDAMLSDAAAASRVALNGNLIVNHLEGLRAAVLAGA 236

Query: 240 GIALLPDYIVKDNPNLVRIME---DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIALL   +V D+    R+M    D + P    +Y  Y      + K+++F +F+  +
Sbjct: 237 GIALLGTEVVGDDIEAGRLMPVLVDAVPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|167840408|ref|ZP_02467092.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 289

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 12/259 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  V RS + T AA+QL + Q+++ R++ GLE  +G +LF R   G  LT  
Sbjct: 1   MNWDDVRIFLAVHRSVTLTGAAQQLGIDQTTVGRRLGGLEGALGSRLFLRTTEGFVLTRS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++     E+     + +   + +  +  G +R+ TT  L  + +   ++     +P I
Sbjct: 61  GEQVLETAREMERLAVSFERRSEGADERIEGDVRVTTTDTLAIDFVIPAIERLQTRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    + +D+S   AD AIR  +P +   LI R+L +  +  YA+  Y+    EP  
Sbjct: 121 RVLLSTTPRLLDLSRREADIAIRTERP-ELQGLIVRRLGSWEVGLYASRSYVARRGEPRP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239
             E   H+L  +   + K   D          +GE R       +++S L +  +   G 
Sbjct: 180 GGEFSGHDLAVYQPGVTKRQHDTF--------VGESRARGRVVAELDSSLMLSAFVRAGL 231

Query: 240 GIALLPDYIVKDNPNLVRI 258
            +  LP Y+ +  P LVRI
Sbjct: 232 ALGELPTYMAQRYPELVRI 250


>gi|169795723|ref|YP_001713516.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|184158374|ref|YP_001846713.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|260554785|ref|ZP_05827006.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|301348273|ref|ZP_07229014.1| transcriptional regulator [Acinetobacter baumannii AB056]
 gi|301512453|ref|ZP_07237690.1| transcriptional regulator [Acinetobacter baumannii AB058]
 gi|301594589|ref|ZP_07239597.1| transcriptional regulator [Acinetobacter baumannii AB059]
 gi|332873866|ref|ZP_08441806.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|169148650|emb|CAM86516.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|183209968|gb|ACC57366.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|260411327|gb|EEX04624.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|322508700|gb|ADX04154.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323518307|gb|ADX92688.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332737852|gb|EGJ68739.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 300

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 140/296 (47%), Gaps = 13/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237
             S  EL  H +++  +   + ++    L   D  + + ++S   +  N Y+ + Q    
Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYM-LAQLASQ 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GIALLPD   +D   +  LV+I+ D        +  YP      G L A R FI
Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289


>gi|308188569|ref|YP_003932700.1| HTH-type transcriptional activator aaeR [Pantoea vagans C9-1]
 gi|308059079|gb|ADO11251.1| HTH-type transcriptional activator aaeR [Pantoea vagans C9-1]
          Length = 299

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 128/270 (47%), Gaps = 5/270 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GSFT AAE L + + S+SRQI  LE ++  +L +R  R + LT+ G   +
Sbjct: 7   MQVFVRVAEMGSFTRAAESLGIPKGSVSRQIQALENQMATRLLHRTTRRVQLTQDGLVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++      Q      SGKLR+  ++ +    +   L EFL  YP ++I+L 
Sbjct: 67  DRCLDLLSMIDDMDSLFQHEPASLSGKLRVDMSVAMATGFILPRLPEFLQHYPGVEIELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC IR+ + ++ S LI RK+ T  +   A+P YL     P+ ++EL 
Sbjct: 127 SSDRQVDVIREGFDCVIRVGE-LKDSGLIARKIGTHTLINCASPGYLSRFGMPIRLEELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H ++ +   + +    F +               + VNS  +    C+ G GI  +P  
Sbjct: 186 QHAMVHYSQQLGQASPGFEYFDGRQCHYVHTG-GVVTVNSTETYRAACLAGLGIIQVPAA 244

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            ++   +   LV ++         ++  YP
Sbjct: 245 GIQTLLERGELVEVLHRFPARPMPIHLLYP 274


>gi|307728729|ref|YP_003905953.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583264|gb|ADN56662.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 302

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 126/274 (45%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +  F  VAR GSFT AA +L +SQS++S+ I  LE  +G++L  R  R +  TE G
Sbjct: 5   DLSDITAFLSVAREGSFTKAAARLGVSQSALSQTIRNLEARLGLRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +  +++     L     KP+G +RIA      + +L   ++  L  YPDI 
Sbjct: 65  ERLITAVGPLLDEIQAELAALSALRDKPAGNVRIAAGEHAAETVLWPAVERLLPDYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++DN   DI  +  D  IRL + +  + +       + M     P Y +   +P + 
Sbjct: 125 VEIVIDNGLTDIVGERLDAGIRLGEQVAGNMVAVPIGPDMRMAIVGTPDYFRRHPKPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L +HN I     +P     + W      R +       L  N+    ++  + GSG+A
Sbjct: 185 QDLTRHNCINI--RLPTAGGLYAWEFEKGGRALKVRVEGQLVFNTATMSVRAALAGSGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+  V     +  L R++ D   PSF  +  Y
Sbjct: 243 CVPEERVLSHIRSGELTRVLLD-WCPSFAGFHLY 275


>gi|167837076|ref|ZP_02463959.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 300

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 133/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVVAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H ++  +  +    VK SG LR++     G+  +   +  F   +PD+ + L
Sbjct: 66  LEDCHRIIHDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ +L
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGTPETLADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +    L     +   W    D  +   R+S  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHHCLA---LAANANQQRGWTFVDDGEVASIRVSGTMECSDGAVLHEWCLEGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|118472966|ref|YP_886349.1| LysR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174253|gb|ABK75149.1| transcriptional regulator, LysR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 310

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 141/294 (47%), Gaps = 15/294 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +A +G+ T AA    +S S +SR++  LE  +G  L +R ARGL LT +G
Sbjct: 3   DVGDLEFFVTLAAAGTMTEAARHWGVSVSVVSRRLKALEERLGTPLVHRRARGLELTAEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + H   SE+  +L+  +  L       +G +R+ +T+ LG+  +   L +F   +  ++
Sbjct: 63  QQYHVRGSEILQQLKDLESTLNPDPKDLTGSIRVISTVGLGRVHIAPLLHDFRRRHRSVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +  S+   D AI++ + ++ SSL  R+L+       A+P YL     P  +
Sbjct: 123 ISLELTSLPLSASVPGFDIAIQVGR-VRDSSLAIRQLLPNRRVVVASPDYLDAHGAPADL 181

Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L  H L+      G+ I + ++D        R    P    L  N  +++ ++C+ G+
Sbjct: 182 DDLKNHELLVVRENEGESIWRFVKD-------GRETAIPVRGGLICNDGIAVTEWCLAGA 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A+   + V        LV ++ DV TP   V   +   ++ + +++   +F+
Sbjct: 235 GLAMRSIWHVAPYVREGRLVHVLPDVETPEADVVALFDAGVRTSPRVRTLLSFL 288


>gi|59711673|ref|YP_204449.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59479774|gb|AAW85561.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 300

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 138/288 (47%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GS T AAE+L+L++S+IS+++S LE ++G+KL  R  R  +LTE G  
Sbjct: 5   ESMRIFITVVETGSITKAAERLNLAKSAISKRLSELEHQLGVKLLNRTTRTSSLTEAGQV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++     +  +S K +G L++A  +  G   L   L  F  L+P++++ 
Sbjct: 65  YLNKCKLILDEVDDLHCHISSTSSKLNGVLKLAVPLTFGLKHLVPALDNFAKLHPELKLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +K ID+  D  D AIR+   + +S+L  + L  IH     +P YL       +  +
Sbjct: 125 IDFSDKKIDLVEDGVDLAIRIGS-LSNSTLRAKPLAPIHHVLCVSPDYLTEHGHITTPND 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+ +     + +     +   ++ +  P  S    N+   +    V G G+   P
Sbjct: 184 LKSHKLLRYSQ---QPLSGVELIDNNNKTMTVPMESFCIANNGDFLKTMAVSGHGVLFTP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +IV +   N +L+ IM D    S   Y  YPE      K++   +F+
Sbjct: 241 KFIVWEELANGSLIPIMTDYRFNSIKAYAVYPETRYLPRKVRMLIDFL 288


>gi|77459579|ref|YP_349086.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383582|gb|ABA75095.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 295

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 126/259 (48%), Gaps = 7/259 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA +L+ + ++++R I  +E  +G  LF +HA+G  +T  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAARRLNTTHATVARHIEAIEKSLGTALFVQHAQGYEMTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ +S+  P GK+R+  T  LG   L   +      Y  +
Sbjct: 62  GEALLKHAEAMENVALLAQEEITQSTA-PLGKIRVGVTEGLGIMFLASRMIGLFERYLGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  L+ RKL    +  YA+  YL N     S
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-AADMLVTRKLTDYRLALYASRAYLDNAPPLRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  I + D +    E    L  ++     PR+      S ++  Q    G GIA
Sbjct: 180 REDLGRHAWIGYVDDLLFSQE----LMFLNSFCRNPRV-VFHSTSVIAQQQAARSGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMED 261
           +LP Y+   +P+LV ++ D
Sbjct: 235 VLPCYMAASDPDLVALLPD 253


>gi|329851256|ref|ZP_08266013.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
 gi|328840102|gb|EGF89674.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
          Length = 302

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 137/293 (46%), Gaps = 6/293 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  V  + SFT AA++L  +++ +S+Q++ LE E+G  L  R  R +  TE G  
Sbjct: 8   NRLAYFTAVVETRSFTAAAQRLSTTKAVVSQQVARLEEEIGTTLLIRTTRNVHATEAGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  + E     L E +VKPSG LRI  T D G +++   +  F  LYP  ++ 
Sbjct: 68  FYARCITILREAEDAFDALAERAVKPSGLLRITATFDYGISVIVPKIAAFTALYPACEVD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ID+     D AIR+   +  S+L  R++ +      A+P          S + 
Sbjct: 128 LSLSDERIDLVSSNIDMAIRVGW-LSDSTLQARRIDSFRQILVASPQMAPAVSHLDSPRA 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+    +    L  +    +N+    D PI     + + +++ L ++     G+G+++LP
Sbjct: 187 LETLPFVANSAL--RHPLHWNFSHGEDDPIAVRLRAAVSIDATLGVLAAVQAGAGLSVLP 244

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           DYI      +  L+ ++ D   P   ++  +P A       +AF + +   A+
Sbjct: 245 DYIAAPLIGSGELIHVLPDWSLPIGGIFVVFPAARYRPAHARAFVDLLSTPAK 297


>gi|218507938|ref|ZP_03505816.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 260

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 5/244 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R LTLTE G+ 
Sbjct: 5   EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKALGGTLLHRTTRKLTLTEDGAV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++E    ++ E     SG +RIA  +  G+  L   L  FL  +PDI + 
Sbjct: 65  FLERAGRIVREIEEAAADMAERRGALSGPIRIAAPVTFGRMHLGPALYPFLAQHPDIHLT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D++ +D + D  D  IR   P+  S L+  KL        AAP YL     P S+ +
Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPLADSRLVAWKLAPSRRLLCAAPDYLARQGMPTSLAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H  I + +   + + D+ +  T +  I       L +N+   +    + G GIALLP
Sbjct: 184 LNNHRGIFYTN---RGVADWRF-QTPEGAILVRAKPALGINNGDMLRDAAIAGLGIALLP 239

Query: 246 DYIV 249
            +I 
Sbjct: 240 AFIA 243


>gi|193077725|gb|ABO12583.2| regulatory protein LysR:LysR, substrate-binding [Acinetobacter
           baumannii ATCC 17978]
          Length = 300

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 135/282 (47%), Gaps = 27/282 (9%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA   S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR +  + +S+LI R L    +   A+P YLK  
Sbjct: 121 KYPDIQIEISISNRNVDLIAEGFDLAIR-QGQLPNSTLIARPLEQAPLKLVASPAYLKRM 179

Query: 178 REPLSIQELDKHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSY 228
             P +++EL  H  I F     G + P  +    E+  W+         P    L     
Sbjct: 180 GIPKNLEELKHHQCIAFELPSSGKITPWFLKNDNEEIQWI---------PTNRILVKEDI 230

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVY 270
           + ++     G GI    D+IV +     +I +  + P  T Y
Sbjct: 231 VGVVTLAESGLGICQSYDFIVNE-----KIQQGKLQPILTTY 267


>gi|146282478|ref|YP_001172631.1| transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145570683|gb|ABP79789.1| probable transcriptional regulator [Pseudomonas stutzeri A1501]
          Length = 311

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSFT AA Q   S + +SR +S LE  +  +L  R  R L LTE G++  
Sbjct: 7   MRAFVRVVDAGSFTAAARQTDTSTAQVSRLVSELENHLHARLLQRTTRRLALTEVGARFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + E+  +L+  + E   + + P G+LR+ +T  LG  LL G    +   YP++ + L 
Sbjct: 67  ERSREILAQLDDARQEACGAHLTPRGRLRVHSTTGLGIQLLSGLAGHYCERYPEVSLDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D+     D  I L + +  S LI ++L  +     AAP YL+    P    +L 
Sbjct: 127 LSQRQPDLLEAGLDVIITLSRDLPDSELIAQRLGPVFHVVCAAPSYLQRHGVPRRPTDLH 186

Query: 188 KHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H  +   D  P   +D++++      V RP GE      +VN   ++      G GI L
Sbjct: 187 NHRCLRLLD--PVFADDWHFVGDGVEEVIRP-GE----TFKVNVAEAMASAAEAGMGICL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPDY+         L+R++         ++  YP       K++ + +F+
Sbjct: 240 LPDYVAAPALQRGTLLRLLPQYRLQEKQIHALYPSRRFLDAKIRTWLDFL 289


>gi|315128038|ref|YP_004070041.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           sp. SM9913]
 gi|315016552|gb|ADT69890.1| putative transcriptional regulator, LysR family protein
           [Pseudoalteromonas sp. SM9913]
          Length = 298

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 135/287 (47%), Gaps = 5/287 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  L+V Y VAR G+ T AAE L +  S++ R+I+ LE  +  +LF+RHARG  +TE G
Sbjct: 7   DWQDLKVAYEVARLGTLTAAAEVLDVHHSTVLRRINNLEKSLNARLFHRHARGYKVTEIG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL      +  +LE    ++  +     G L + TT+    ++L    ++F  L+P +Q
Sbjct: 67  AKLFTTAQAINGELERLHNDIIAADSTLQGSL-LLTTVSGFIDVLSEVCEQFQTLHPQVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+I+D K + +    A  A+R          I + L  +    YA+ HY+     P ++
Sbjct: 126 LQVIMDQKRLRLDHGQAHIAVRAGPRPDEGDYIAQHLAALSSGFYASKHYISRYGLPQTL 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ ++        +  F W   VD  I  P    L+V+      +  V G GI  
Sbjct: 186 AQLSLHSFVSGVAGYNAKVPYFAW---VDENI-PPSQVKLRVSETSEATRAIVKGLGIGG 241

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   +     +LV ++ + ++    ++      +  T K++AF   +
Sbjct: 242 LQHDVAAQYSDLVPVLPNELSWPTDLWLVTHHLVHRTAKVQAFSQLL 288


>gi|104782411|ref|YP_608909.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95111398|emb|CAK16118.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 303

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 142/287 (49%), Gaps = 11/287 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A + L +S S++ ++++ LE  +G++LF+R  R +TLT +G+     
Sbjct: 9   VFNRVAETRSFVAAGQSLGISASAVGKRVARLEARLGVRLFHRSTRSITLTAEGALFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T+  L ++S  P G+LR++     G  L+   L EF+  YPDI++ L   
Sbjct: 69  SRRILAEIEATEQALSQASGTPRGRLRVSLPQVTG--LVMPALAEFMARYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSIQELDK 188
           ++ +DI  +  D  +R  +P+ S   +  K +    H   A+P YL+    P   +EL  
Sbjct: 127 DRMVDIVGEGFDVVMRGGQPLDSR--LNAKFLGHFQHCLVASPQYLRERGTPQHPRELAA 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDY 247
           H+ + +    P   +   W    + P  +  I    V +++   + + +   GI  LPD+
Sbjct: 185 HSCLHY--RFPSSGKLETWPLRREHPEQDYDIPISMVCNHVETRVCFALNHRGITCLPDF 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            V+    + +LV +++  +    + Y  +P   +   KL+ F +F+ 
Sbjct: 243 NVRKELASGSLVSVLDSFMERRGSFYLLWPSGRQMPPKLRVFIDFML 289


>gi|327480732|gb|AEA84042.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166]
          Length = 311

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 132/290 (45%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSFT AA Q   S + +SR +S LE  +  +L  R  R L LTE G++  
Sbjct: 7   MRAFVRVVDTGSFTAAARQTDTSTAQVSRLVSELENHLHARLLQRTTRRLALTEVGARFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + E+  +L+  + E   + + P G+LR+ +T  LG  LL G    +   YP++ + L 
Sbjct: 67  ERSREILAQLDDARQEACGAHLMPRGRLRVHSTTGLGIQLLSGLAGHYCERYPEVSLDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D+     D  I L + +  S LI ++L  +     AAP YL+    P    +L 
Sbjct: 127 LSQRQPDLLEAGLDVIITLSRDLPDSELIAQRLGPVFHVVCAAPSYLQRHGVPRRPTDLH 186

Query: 188 KHNLITFGDLIPKCMEDF----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H  +   D  P   +D+    N +  V RP GE      +VN   ++      G GI L
Sbjct: 187 DHRCLRLLD--PVFADDWHFVGNGVEEVIRP-GE----TFKVNVAEAMASAAEAGMGICL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPDY+         L+R++         ++  YP       K++ + +F+
Sbjct: 240 LPDYVAAPALQRGTLLRLLPQYRLQEKQIHALYPSRRFLDAKIRTWLDFL 289


>gi|17544784|ref|NP_518186.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17427073|emb|CAD13593.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 312

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+ G    
Sbjct: 7   MRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   ++  +      S    G LRI   +  G ++L   L  F  LYP++   + 
Sbjct: 67  QRCQQILLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDVA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P   +++ 
Sbjct: 127 LSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQRAEDIA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246
            H +I      P+   ++   A   + I  P    L V S   +M   VL   GIA+L  
Sbjct: 187 DHRVIAMWH--PQLRHEWEMTAPDGQSIAVPVQPSL-VTSNAELMHRAVLADMGIAILSS 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A + K
Sbjct: 244 YMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEAK 298


>gi|126724486|ref|ZP_01740329.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126705650|gb|EBA04740.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 299

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 130/285 (45%), Gaps = 10/285 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DW  ++ F  VA+ GS + AA +   SQ +I R I  LE +  + LF R +RG  LTE
Sbjct: 7   SLDWSLVQSFLAVAQEGSLSAAARKSGQSQPTIGRHIKSLEAQFDVPLFKRVSRGYELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L R   E++       +     S + +G +RI  +  +  +LL   + +    +P 
Sbjct: 67  VGQNLLRPAQEMHRAALNLNLSAAGHSTELAGTVRITASDLVAHHLLPPIIAKMRTEHPG 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I ++  N   ++    AD A+R+ +P Q   +I R L  + M  Y A  YL+    P 
Sbjct: 127 ISIDVVASNSSDNLLYREADIAVRMYRPTQ-LDVITRHLGGLAMGVYGAKSYLEEHGRPQ 185

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + ++L +H  + +   D I + M +  W AT  R + + R  C     Y    Q    G 
Sbjct: 186 TAEDLFQHAFVGYDRDDQIIRGMREMGWPAT--REMFQTR--CDDQAVY---WQLVCAGC 238

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G+ +    I      + +++ D+  P   V+    EAL+ T +++
Sbjct: 239 GLGITQRSIGDQKIGVEQVVPDLPIPKLPVWLTAHEALRQTPRIR 283


>gi|237800826|ref|ZP_04589287.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331023683|gb|EGI03740.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 301

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 136/303 (44%), Gaps = 17/303 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+
Sbjct: 4   FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    EV   +  ++   +++   PSG LRI   +  G  +L   L EF   +P +++
Sbjct: 64  AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAEFSRHFPQVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L N+ +D+  +  D A+RL    ++S LI R +    +   AAP YL     P   +
Sbjct: 124 DLVLTNQRLDMIDNGFDVAVRLGNIPEASPLIARPMQDYTLTICAAPAYLARHGAPTHPE 183

Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           +L  HN + F    P   E       W  T   P GE  +     L  N+   + Q    
Sbjct: 184 DLRAHNCLPFA--YPAGDEWRTAGTQWRMT--GPEGEVLVEVDGSLIANTSAGLYQAARA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GI +LPD +V+ +     LV ++ D   P   +   Y   +++  +L   R+F+    
Sbjct: 240 GMGIVMLPDALVQRDLQEGRLVALLPDYHLPRRPMNLLY---VQDRYRLPKLRSFVEFAL 296

Query: 295 RDW 297
           + W
Sbjct: 297 QRW 299


>gi|261342001|ref|ZP_05969859.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315916|gb|EFC54854.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 299

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 122/247 (49%), Gaps = 8/247 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE L L + S+SRQI  LE ++G +L +R  R ++LT+ G   +
Sbjct: 7   MQLFLRVAELESFSRAAETLSLPKGSVSRQIQALENQLGTQLLHRTTRRVSLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+      Q      SG+LR+   + + +NL+   L  FL  YP I+++L 
Sbjct: 67  ERAKDLLTNLDELDGMFQHDPSSISGRLRVDMPVGVARNLVIPKLPAFLQQYPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   ++ S LI R L  + +   A+P YL     P ++ +L 
Sbjct: 127 SSDRLVDVIREGFDCVVRV-GALKDSGLIARPLGKLSVINCASPDYLTRFGYPETLDDLA 185

Query: 188 KHNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H +I +   +   P+  E +N   T     G      L VNS  +    C+ G GI  +
Sbjct: 186 SHAVIHYSATLGTRPQGFEFYNGSTTQWVKTG----GVLTVNSTETYQAACIAGLGIIQV 241

Query: 245 PDYIVKD 251
           P   V+D
Sbjct: 242 PRVGVRD 248


>gi|91776142|ref|YP_545898.1| LysR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710129|gb|ABE50057.1| transcriptional regulator, LysR family [Methylobacillus flagellatus
           KT]
          Length = 338

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 144/287 (50%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AA+ L L +++++  I  LE  + ++L  R  R L+LT  G+  +
Sbjct: 8   MQVFTRVVDANSFTRAADSLGLPRTTVTTTIQALEGLLNVRLLNRTTRRLSLTPDGAAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++ T+   ++ +  PSG+LRI     +G+ ++   L +F   YPD+++ + 
Sbjct: 68  ERCMRILAEVDETEALFRDVTRGPSGRLRIDVPPSIGRLIIIPKLCDFYTRYPDVELVIG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC +R+   +Q SS++ R++ T H+   AAP YL     P ++ +L 
Sbjct: 128 MSDRPVDMVQEAVDCVVRVGD-LQDSSMVARRIGTFHIVTCAAPRYLAEYGMPGTLDDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246
            H+ + +     +   + +W   ++  + E +++     +   +   C L G G+   P 
Sbjct: 187 HHHAVHY--FSSRTGRNMDWDFVIEGKVTEVKMAGRVAVNDSEVYVACALQGFGLIQAPR 244

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+V    ++  LV ++      S  +   Y      + K++AF ++I
Sbjct: 245 YMVLPQLESGELVEVLPQWQPSSHPISVVYLHNRHLSPKVRAFVDWI 291


>gi|254791464|ref|YP_003076301.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223766|ref|ZP_05938047.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255975|ref|ZP_05948508.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|254590864|gb|ACT70225.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
          Length = 329

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++ +++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 36  FALIVRAGSFSRAASEMGITLAALSQNLKSLEERLNTKLIYRTTRNISLTEEGQRLYEVL 95

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 96  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSKVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323


>gi|194364706|ref|YP_002027316.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347510|gb|ACF50633.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 291

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 133/294 (45%), Gaps = 24/294 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  VA  GSFT AAEQL +S   + + I  LE  +G  L  R+ R   LTE GS   
Sbjct: 7   MQAFVAVAERGSFTGAAEQLQVSAVMVGKYIQQLEAHLGTALLQRNTRRQRLTEAGSAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V  +++  + ++    V+P G LR++     G  +L   L   L   P + I+L 
Sbjct: 67  AGCRQVLEQVQQAEADVAGLQVQPRGLLRVSAPTTWGSCVLAPVLSGLLREQPLLNIELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  D  D AIR+  P+ S  ++ R L    M   AAP YL+    P + ++L 
Sbjct: 127 LSNRRVDLIEDGFDVAIRV-GPLPSQEVVARPLPPYAMSLCAAPSYLRRRGTPRTPEDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            H+          C+    W       LA  ++   E R++C   N  +++ +  V G+G
Sbjct: 186 GHD----------CLSHLAWRGGHGWQLANGEQVDWEARLTC---NDGVALREAAVAGTG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + L P  ++        L  ++ D +     ++  Y    +   +L+ F +F+ 
Sbjct: 233 LVLQPTALLAGEIAAGRLKPLLRDYLPEPRPMHLIYLPDRRPRPRLQCFVDFVM 286


>gi|270262555|ref|ZP_06190826.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043239|gb|EFA16332.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 306

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 140/304 (46%), Gaps = 33/304 (10%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + +KL +R  R L +T  G+
Sbjct: 4   FDAMRAFARVVEAGSFTKAAQTLHISKTTVTQLIQQLEARLRVKLLHRTTRKLGVTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPDIQ 
Sbjct: 64  VYYERVIRLLADMEDAENSLSSAAITPRGRLRVDVPSPLARLILVPALPAFHARYPDIQF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  D  DC +R  + I   SLI R +  + +  Y AP Y++    P   +
Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGE-INDLSLIARHVGDLQIGVYVAPSYVERLGAPAHPR 182

Query: 185 ELDK--HNLITF-----GDLIPKCME--------DFNWLATVDRPIGEPRISCLQVNSYL 229
           EL+   H ++ F     G + P  +           N++  VD             N+YL
Sbjct: 183 ELENTDHRIVGFMSSRTGKIDPLVLRRESEHIEITGNYVLAVD-----------DGNAYL 231

Query: 230 SIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              +  + G G+  LP Y+   +    +L+ + E        +Y  +P       KL+ F
Sbjct: 232 ---EAGLAGLGVIALPVYMATAHQACGSLIPLFEHWRINPMPLYLAFPPNRHVNAKLRVF 288

Query: 287 RNFI 290
            ++I
Sbjct: 289 IDWI 292


>gi|149926329|ref|ZP_01914591.1| LysR protein [Limnobacter sp. MED105]
 gi|149825147|gb|EDM84359.1| LysR protein [Limnobacter sp. MED105]
          Length = 295

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 139/291 (47%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  +GSFT AA+ L LS++++++ I  LE  + IKL  R  R + +T  G+  +
Sbjct: 1   MKAFVRVVETGSFTKAADTLGLSRTTVTQLIQQLEAHLRIKLLNRTTRKVNVTNDGAAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L   +  L  +S  P G LR+         +L   L +F   +P IQ++L 
Sbjct: 61  ERVVRLLTELSEIENSLPSASSAPRGLLRVDVPSPFANIVLVPALPDFFAQFPGIQLELG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
             ++ +D+  D  DC +R  + I   +LI R +  + +  YAAP YLK    PL   EL 
Sbjct: 121 ASDRKVDLISDNVDCVVRGGE-ITEGALIARHVGDLQLGVYAAPSYLKRSGTPLHPHELR 179

Query: 187 -DKHNLITF--GDLIPKCM-EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +H ++ +   + IP  M +D   +    R       S L+++   + +   ++G G+ 
Sbjct: 180 ESEHRIVRYRWANEIPYAMYKDGERVRLQGR-------SMLEIDDGNAYLTAGLVGLGVL 232

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+Y+ K   ++  LV++  D    S  +Y  Y      + +L+ F  +I
Sbjct: 233 WLPEYMAKSHIESGALVQLFLDWQLDSMPLYVAYAPNRYASKQLRVFIEWI 283


>gi|78067453|ref|YP_370222.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968198|gb|ABB09578.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 324

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 142/287 (49%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT++G+  +
Sbjct: 7   MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTQEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q  + KPSG LR+     LG+ ++  +L  F   YPDI ++L 
Sbjct: 67  EHCMKIISEIAEADASFQTGNRKPSGVLRVHMPSSLGRRIVLPSLSIFRQRYPDITLELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP  I +L 
Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPHEIADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ + +            W+  +D    E R++  + VN   + +   + G G+     
Sbjct: 186 EHHAVNYRS--SHGARAIPWVFMIDGKPFEVRMNGGVTVNDSDAYVTCGLEGFGMIQPTL 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V +N    +LV ++ D       +   YP     + K++ F ++I
Sbjct: 244 FMVLENLLDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWI 290


>gi|319781947|ref|YP_004141423.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167835|gb|ADV11373.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 304

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 13/281 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F     +GSFT A E+LH+++S+I + I+ LE  +G++L  R  R L+ T +G   +   
Sbjct: 12  FVQAVEAGSFTSAGERLHVTKSAIGKSIAQLEQRLGVRLLNRTTRSLSPTSEGISYYEAC 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                ++E  Q  L      PSG+LR+   +  G+  +   L E    +PD+ +++  ++
Sbjct: 72  VRALAEIEAAQSLLASRRQVPSGRLRVDVPLAFGRRCVAPVLFEISRKFPDLTVEISFND 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D AIR+ +   S SL  R+L        AAP YL     P S+++L  H+
Sbjct: 132 RRVDLIEEGIDLAIRMGELDDSLSLAARRLYAQRSAICAAPDYLDRHGRPQSVEDLADHS 191

Query: 191 LITFGD---LIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +I +G    + P  +   +  LAT    + + R   L +     ++   + G GIA LP 
Sbjct: 192 VIGYGREGIVRPWVIRHSDGHLATF---VPKAR---LVLGHGEPMLDAALAGCGIAFLPT 245

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           ++  D   + +L  ++ D +  +  V+  +P     T K++
Sbjct: 246 WLAADSLKSGDLEMVLSDCLVENIVVHAVWPVTRALTPKVR 286


>gi|222087545|ref|YP_002546082.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724993|gb|ACM28149.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 298

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 138/287 (48%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F      GSF+  A+ L++S   + + +  LE  +G++L  R  R   LTE GS  +
Sbjct: 7   MSIFVKAVELGSFSAVADALNMSPQLVGKHVQFLEHHLGVRLLNRTTRRQHLTEVGSLFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +  ++E+ +    E+   P G+LR++  +  G N L   L E+L  YP++ I L 
Sbjct: 67  ERSRNILAEVESAEALAAETRAVPRGRLRVSAPVTFGINALAPKLPEYLKAYPEVSIDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D   R+ + +  S LI R+L    +   AAP YL++   P +  +L 
Sbjct: 127 LSNRLVDLIDEGYDAIFRVGE-LSDSGLIARRLDPYRLIICAAPRYLESRGTPRTPGDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + F     +    F      VD PI       L V+S  +++Q  V G GI   P 
Sbjct: 186 DHECLIFSHTRLRTHWAFEGPDGYVDVPIS----GRLTVDSGEALLQAAVAGLGIIFQPL 241

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +++   ++  LV I+ +   P+  ++  Y    + T KL++F +++
Sbjct: 242 ELIRASIESGQLVPILPEYRIPTRPLHVLYAPDRRITPKLRSFLDYV 288


>gi|85706941|ref|ZP_01038031.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
 gi|85668552|gb|EAQ23423.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
          Length = 306

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 11/252 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R LT TEQG  
Sbjct: 5   DNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEEHLGVRLFQRTTRSLTPTEQGQS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   SE+   +E  + ++   +  P G L +A  + +G+ L+   + EFL  YP+++++
Sbjct: 65  FYSGASEILEAVERAEAQIVNMTENPKGSLYVAAPLGVGRRLIAPQVPEFLQAYPEVKVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A  L +P + S+L  RK+  +     A+P Y+     P S  +
Sbjct: 125 LRLTDRKVDLTTEGLDLAFFLGQP-EDSNLRIRKIADVARILCASPDYVAKRGLPESGDD 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           L  D H  +      P   E F WL +   P G  R       + +    +  + + G G
Sbjct: 184 LIADGHECLNL--RFPGATE-FQWLLST--PDGPKRFRVSGRCESDDGDVLTDWALAGQG 238

Query: 241 IALLPDYIVKDN 252
           +AL P + + ++
Sbjct: 239 VALKPIFEIAEH 250


>gi|220915698|ref|YP_002491002.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953552|gb|ACL63936.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 319

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 133/286 (46%), Gaps = 7/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+VF  VA +G F  A  +L LS  +++R I+ LE  VG +LF R  R +  TE G + 
Sbjct: 6   QLQVFVAVAEAGGFARAGARLRLSPPAVTRAIAALEGRVGARLFNRTTRTVRPTEAGLRF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 V   LET + E       P+G L +  ++  G+  L   ++ FL L+P +   L
Sbjct: 66  LEPARRVLADLETAEREAAGEGAAPAGHLTLTASVTFGRWALAPVVRAFLGLHPGVTASL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +++  +  D A+R+ + +  S L+ RK+  I     A+P YL+    P S   L
Sbjct: 126 VLVDRVVNLVEEGVDVAVRIGQ-LPDSDLVARKVGEIRRVLVASPAYLRAHGAPSSPARL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H +I F  L      ++ ++    R +  P    L VN  L+ +     G GI L   
Sbjct: 185 RAHAVIAFTGL--HAGREWRFVDG-GRQVAVPVAPRLVVNDALAALDAAEAGDGITLALS 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           Y+V +      LV ++     P   V   +P A     K++AF +F
Sbjct: 242 YMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDF 287


>gi|299068360|emb|CBJ39584.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 312

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+ G    
Sbjct: 7   MRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   ++  +      S    G LRI   +  G ++L   L  F  LYP++   + 
Sbjct: 67  QRCQQILLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDVA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P   +++ 
Sbjct: 127 LSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQRAEDIA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246
            H +I      P+   ++   A   + I  P    L V S   +M   VL   GIA+L  
Sbjct: 187 DHRVIAMWH--PQLRHEWEMTAPDGQSIAVPVQPSL-VTSNAELMHRAVLADMGIAILSS 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A + K
Sbjct: 244 YMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEVK 298


>gi|330819194|ref|YP_004348056.1| transcriptional regulator, lysr family [Burkholderia gladioli BSR3]
 gi|327371189|gb|AEA62544.1| transcriptional regulator, lysr family [Burkholderia gladioli BSR3]
          Length = 310

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 137/290 (47%), Gaps = 10/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  +A SG F  AA+ L + ++++S+ I  LET + +KLF R  R + +TE+G   +
Sbjct: 7   LRVFVRIAESGGFGKAADTLDVPRATVSKLIQELETHLRVKLFQRSTRKVVVTEEGQSYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++   L+       +   KP G++R+         +L   L EF   +PDIQ+ + 
Sbjct: 67  RNVVKLLADLDEMDGRFADVHGKPRGRVRVDIGSSFANLILLPRLPEFRRRFPDIQLDVG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           + ++  D+  +  DC IR  + +  +SL+ R++ ++    YA+  YL     P    EL 
Sbjct: 127 VSDRHADLIGEGVDCVIRGGE-LSDASLVARRIASLEWGTYASAAYLAERGTPGHPDELR 185

Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSG 240
           + H L  +     G   P   E      TV+ P G   +   +  ++L S++    +G  
Sbjct: 186 EGHELSGYFSSLTGRPFPMLFERGGERLTVE-PKGARAVCVNESTAHLTSLVSGLGVGQT 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            A +    V     LVRI+     P   V+  + +A  N+ +L+ F +++
Sbjct: 245 FAFMAQPAVARG-ELVRILPKWTRPVQPVHVVFAQARYNSARLRVFVDWV 293


>gi|326388714|ref|ZP_08210306.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206804|gb|EGD57629.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 315

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 137/299 (45%), Gaps = 12/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  V  +GSF  AAE L LS+ ++S+ +  LE  +GI L +R +R L LTE G
Sbjct: 5   DLEAWAIFAKVVETGSFAAAAEALGLSKPTVSKAMGRLEARLGIPLLHRTSRRLALTESG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +      +    E  + E +     P G +R+A  +  G   +   L EFL  +P + 
Sbjct: 65  RGVLDKARRILADGEAAEAEARADGDIPRGLVRLAVPMSFGLRHVAPLLPEFLAAWPLVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +++     D  +R+   ++ SSL  R+L T+     AAP YL     P   
Sbjct: 125 VDLDLSDTLVNVVAGGHDIVLRIAG-LEDSSLRARRLCTVRRPLVAAPAYLAVHGTPTHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           +EL  H  + + +L    +  F   +      GE  ++    L  N+  ++    + G G
Sbjct: 184 RELSAHQGLLYTNLEHPGLWRFTHPSE-----GEYGVTVHGRLGANNADALAPALLAGQG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IAL PD++V D+     LV +M D   P   ++   P   +   +++   +F+  + RD
Sbjct: 239 IALQPDFMVWDHLAKGTLVEVMSDWRIPDIALHLVTPPGKQRPARVRVLLDFLAARLRD 297


>gi|218549989|ref|YP_002383780.1| LysR family transcriptional regulator [Escherichia fergusonii ATCC
           35469]
 gi|218357530|emb|CAQ90169.1| putative transcriptional regulator, lysR family [Escherichia
           fergusonii ATCC 35469]
          Length = 297

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  I  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANALPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  N     +   + G GIA
Sbjct: 185 YELQNHQCINM--RLPTAGGIYHWEFEREGKPLRVRVDGQLTFNLLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275


>gi|167893701|ref|ZP_02481103.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei 7894]
 gi|167918407|ref|ZP_02505498.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei BCC215]
 gi|237811722|ref|YP_002896173.1| LysR substrate binding domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|254298079|ref|ZP_04965532.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157808036|gb|EDO85206.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|237503859|gb|ACQ96177.1| LysR substrate binding domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 299

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 136/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S V PSG LR      +G+ ++   L EFL  YP I ++
Sbjct: 65  LYERCLRLIADVEETENLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H  + +       +  + W+    V R     R++   VNS  + +  C+ G G+  
Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ D       +   YP     + + + F  ++
Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290


>gi|171057523|ref|YP_001789872.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774968|gb|ACB33107.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 307

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W ++  F  VA  GS + AAE+L +S ++ SR +  LE  +G +L  R  R L LTE G 
Sbjct: 4   WSQIEFFVQVAELGSLSRAAEKLDMSNAAASRTLVALEERLGARLVERTTRRLWLTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             HR    +  ++   +  + E++++P+G LR+ +++      +   L EF   YP + +
Sbjct: 64  AFHRRCVAMLAEMAEAEAAVLETTLQPTGLLRVTSSVSFAMLHIAPGLPEFSRRYPKLNV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  N+  D      D AIR R+    S +  R+L         AP Y      P +  
Sbjct: 124 QIVAANRYPDFIEAGIDVAIRTREVEGDSGITVRRLAHTRRVLAGAPGYFAVHGTPRTPD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L +H L+ +        +D N L  +  D        S L  N    I    + G GI 
Sbjct: 184 DLKQHRLLVY-----NLAKDPNVLHFSRGDERCDTSITSMLDSNEGQVICSAGLAGLGIV 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + P YI+ D      LV ++ D   P  T+   Y        K++ F +F+
Sbjct: 239 IQPLYIIHDEIVAGRLVPVLTDWELPPLTINLAYQSRRHQPAKIRVFNDFL 289


>gi|34496437|ref|NP_900652.1| transcription regulator protein [Chromobacterium violaceum ATCC
           12472]
 gi|34102290|gb|AAQ58656.1| probable transcription regulator protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 295

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 138/290 (47%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++R F  VA  GSF  AAE+L LS++ +++ ++ LE  +G++L +R  R L+LTE G 
Sbjct: 4   FSEIRAFVCVAELGSFVAAAERLELSRAMVTKLVAALENRLGVRLMHRTTRKLSLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +L+     L   + +P G+LR++  +  G   L   +  F   +P I++
Sbjct: 64  TYLAQAGSLLGELDELDALLSHGASEPVGRLRVSAPVSFGMRYLGRIIGGFHQRHPQIEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L+++ +D+  +  D A+R+   +  SSL+ RKL  +     A+P YL     P   +
Sbjct: 124 ELNLNDRRVDLVEEGFDLALRVSN-LSDSSLVARKLAQVEDLLAASPDYLARRGTPQGPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  + +       + D+      D   G  ++   L+ N+   +    V G GI L
Sbjct: 183 ELAGHQCLLYALTAQPNVWDYQ---APDGTQGRVKVKGGLKANNGDVLTDAAVHGMGIVL 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P +++++   +  LV ++         +   YP      GK++ F  ++
Sbjct: 240 QPRFLLEEELADGRLVPVLPGYHWHCLDLSVVYPVRRHVPGKVRVFVEYL 289


>gi|332532609|ref|ZP_08408486.1| putative transcriptional regulator with periplasmic binding domain
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038030|gb|EGI74478.1| putative transcriptional regulator with periplasmic binding domain
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 312

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 139/272 (51%), Gaps = 6/272 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +   V   GSF  AAE  ++ +S IS+QIS LE E+G++L  R  R  +LT  G+++
Sbjct: 6   RLLMLLEVVEQGSFAKAAEIRNIDRSVISKQISRLEDELGVRLLNRTTRSFSLTAAGAEM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  +E+   L  T    +   ++P G L+I ++  +G+  LQ  L +F   +P ++++L
Sbjct: 66  IKKAAELRELLGETVRMAENYHLEPRGVLKITSSTLIGRRYLQPVLNDFQKRFPQVEVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +DI  +  D A R+ +P + SSLI RK+    +   AAP +++    P +++EL
Sbjct: 126 RLDDRLVDIVSEGFDLAFRVGEP-KDSSLIARKIARNRLLILAAPQFIETYGMPKTMEEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            K    ++     +  E  ++  +      +   S  + N   S++   + G+   + P 
Sbjct: 185 AKLPAASYASNSIRV-EAIDYYDSKGERCEQKIKSVFRANDAESLLMKTLSGTTYFVAPA 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFT-VYFCYP 274
           +I+ D      LV ++ DV    F+ +Y  YP
Sbjct: 244 FIIGDEIIQGKLVPLLTDVKLMEFSAMYAVYP 275


>gi|325578395|ref|ZP_08148530.1| LysR family transcriptional regulator [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160131|gb|EGC72260.1| LysR family transcriptional regulator [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 299

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 138/289 (47%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  V  + SFT AA Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISVFCKVIETQSFTQAANQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIVPTEAGML 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L      +   +    G L I+   D G   +  NL +F+ L+P++ ++
Sbjct: 65  YYQRCQAILLDLSEADSSISNMATSLQGNLLISVPRDFGLLYISPNLPKFIELHPNLHVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K +D+  +  D A+R+   +Q SSL+ RK+ +  MH  A+P YL+    PL+  +
Sbjct: 125 IEFEDKRVDLVAEGYDLALRIGY-MQDSSLVARKISSSPMHFVASPSYLEARGTPLTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ H     G L    +   +W +T    I   +I    V N+ +++++    G GI+  
Sbjct: 184 LEYHQ----GLLYKSSLNQVHWQSTKANQIQRYKIQSKVVSNNGMALLEMTKAGLGISNA 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P + VKD   +  LV I+ +       +Y  YP       K++AF  F+
Sbjct: 240 PSFFVKDALASGELVEILSEYKQKPLDIYVVYPNRRHLPAKVRAFIEFL 288


>gi|260554583|ref|ZP_05826804.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411125|gb|EEX04422.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 300

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 13/222 (5%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA+  S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADVEVFLIVAKKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTSYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR +  + +S+LI R L    +   A+P YLK  
Sbjct: 121 KYPDIQIEISISNRNVDLIAEGFDLAIR-QGQLPNSTLIARPLEQAPLKLVASPAYLKRM 179

Query: 178 REPLSIQELDKHNLITF-----GDLIPKCM----EDFNWLAT 210
             P +++EL  H  I F     G + P  +    E+  W+ T
Sbjct: 180 GIPKNLEELKHHQCIAFELPSSGKITPWFLKNDNEEIQWIPT 221


>gi|238893200|ref|YP_002917934.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545516|dbj|BAH61867.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 301

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 125/250 (50%), Gaps = 7/250 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++ +F  V  SGSF+ AAEQL  + S++SR +  LE+++G+ L  R  R L+LT
Sbjct: 1   MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + +L E+   P G LR+     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRMQVVLQEMAAAENDLLETRTTPRGLLRVDAATPVMLHFLMPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRA-GTLTDSSLRARPLFTSYRKIVASPDYVARYGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               +L +H+ + F +  P  +    W ++  D  + E   + +  NS  ++ Q C+ G+
Sbjct: 180 QHPSDLKQHHCLGFTE--PVSLN--TWPVSCCDGQLLEIE-AAVSSNSGETLKQLCLTGN 234

Query: 240 GIALLPDYIV 249
           GIA L DY+V
Sbjct: 235 GIACLSDYMV 244


>gi|148549538|ref|YP_001269640.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513596|gb|ABQ80456.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 302

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 16/298 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L  R  R L+LT  G +
Sbjct: 5   NAMRVFVTVIDLGSQSAAADYLQLSRPVVSRYLAELEDWVGTRLMQRTTRKLSLTAAGQE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++       Q  +Q+    P G LRI+ +   GQ  L   +  ++  +PD++++
Sbjct: 65  TLPRCRQLLELAGDLQAAVQQPEDAPRGALRISVSTSFGQAQLVDAVAAYVRRFPDVKVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  D AIR    +   SLI R+L        AAP YL     P  ++E
Sbjct: 125 LQMLDRTVNLVDERIDLAIRTSNDV-DPSLIARRLSVCRSVVCAAPAYLNERGTPQRVEE 183

Query: 186 LDKHNLIT---FGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  HN +T   FG  +        W  A   + +  P    +  N  +++ +  + G+GI
Sbjct: 184 LGLHNCLTHAYFGHSL--------WHFAVAGQQVAVPVSGNISANEVMTLQRAALAGAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP +   D      LVR++ +       +   Y         L++  +F+  + +D
Sbjct: 236 AMLPTFQAADAIRRGELVRLLPEAKPRELNLNAVYTSRKHMPATLRSMLDFLVQRFKD 293


>gi|167619553|ref|ZP_02388184.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257138727|ref|ZP_05586989.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 300

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 134/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LR++     G+  +   +  F   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ +L
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPETLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWTFVDDGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|156936242|ref|YP_001440158.1| hypothetical protein ESA_04141 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534496|gb|ABU79322.1| hypothetical protein ESA_04141 [Cronobacter sakazakii ATCC BAA-894]
          Length = 300

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 131/306 (42%), Gaps = 29/306 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR GSFT AA QL ++QS++S+ I+GLE  + ++L  R  R ++LT
Sbjct: 1   MKRNLNDLFSFVTVAREGSFTRAAAQLGVTQSALSQAIAGLENRLKLRLLTRTTRSISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L       + ++E     L     KP+GK+RI     +   LL   L   L  YP
Sbjct: 61  TAGERLLEAIGNRFDEIEAELDMLSALRDKPAGKVRITCDPHVLHALLLPKLTPILRDYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++   ++   +I  D  D  +RL   I    +       + M A A+P Y      P
Sbjct: 121 DIEMEFDANHGFRNIVADRFDAGVRLGGTIDKDMIAVPISPPMRMAAAASPDYFAAHPVP 180

Query: 181 LSIQELDKHNLITF-----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQY 234
            +  +L  HN I       G L       + W     D P+       L  N+   I+  
Sbjct: 181 ETPHDLVAHNCINLRMTSGGGL-------YVWEFDGQDGPVNVRVEGQLIFNTAAHIVHA 233

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP-------------EALK 278
            + G GIA LP+    D   +  LVR++E    P    Y  YP             EALK
Sbjct: 234 ALDGLGIAFLPEGEFDDHFKDGKLVRVLEAWCAPFPGYYLYYPSRKQPSPAFSLVVEALK 293

Query: 279 NTGKLK 284
            TG  K
Sbjct: 294 MTGNRK 299


>gi|124383352|ref|YP_001026627.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126448992|ref|YP_001080090.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|167003408|ref|ZP_02269194.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254358879|ref|ZP_04975152.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|124291372|gb|ABN00641.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126241862|gb|ABO04955.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|148028006|gb|EDK86027.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|243061048|gb|EES43234.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 299

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E  +   + S V PSG LR+     +G+ ++   L EFL  YP I ++
Sbjct: 65  LYERCLRLIADVEEAENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H  + +       +  + W+    V R     R++   VNS  + +  C+ G G+  
Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ D       +   YP     + + + F  ++
Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290


>gi|317493843|ref|ZP_07952260.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918170|gb|EFV39512.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 297

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++          LE     L + +   SG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIADLEQELESLVQLNGTASGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 LELVVDNGFVDIVEGRFDAGIRLGESVDKDMIAVRIGPDMRMAVVGAPSYFAENPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       +  N     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEKEGKPLRVRVEGQVTFNLQAERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+  V+D   +  L+++++D   PSF  Y+ Y
Sbjct: 243 CIPEDRVQDYIKSGELIQVLQD-WCPSFPGYYLY 275


>gi|239815542|ref|YP_002944452.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802119|gb|ACS19186.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 304

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 144/289 (49%), Gaps = 18/289 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V  +G+FT AA+ L L + ++++QI  LE+ + +KL  R  R +T+T  G+  +
Sbjct: 7   MRIFVRVVEAGTFTRAADSLALPKGTVTKQIQALESRLRVKLLNRTTRRVTVTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + + +  +  +  +  +   P+G+LRI     + + ++   L  F   YP+IQ+ L 
Sbjct: 67  ERAARLLNDFDDIEASMTNAQANPTGRLRIDVGTSVARQIILPALATFCDRYPEIQVDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR  + +   SL+ R++ T+H    A+P Y+K    P    +++
Sbjct: 127 VSDRTVDLISDNVDCVIRAGE-LSDQSLVARRIGTLHFVTVASPAYVKRYGIPQHPNDIE 185

Query: 188 K-HNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-G 240
           K H+++++       + P      +    ++ P    R+S  + N++++     VLG  G
Sbjct: 186 KRHHVVSYFSGTTRRIYPHEFRKGDEYIELNGPY---RVSVNESNAHMA----AVLGGFG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I+    ++ +    +  L+ ++ D       ++  YP     + K++AF
Sbjct: 239 ISQCITFMAEPLLASGELIEVLPDWQREPLPIHVVYPPNRHLSAKVRAF 287


>gi|78062112|ref|YP_372020.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969997|gb|ABB11376.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 300

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 133/304 (43%), Gaps = 15/304 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ +R+F  V   G+FT AA  L +  S +SR++  LE ++G++L YR  R +++TE 
Sbjct: 1   MDFESIRIFLRVVERGNFTAAATHLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     + +     P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYERCLRAEDILLDADRQARALRTAPEGMLRVLVPYSIGLFELEPALAEFRRRYPLV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  SS I R L        A+P YL     P +
Sbjct: 121 QLVLIYDNNPLDLVEHGFDVALRA-GVLTDSSYIARSLGWSQAKLAASPAYLDRVGRPTT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            Q+L +H+L+  G   P         A    D P+       L  N  +++++    G G
Sbjct: 180 PQDLAQHDLLLVGRDAPGLTLRLTNAAGEVADVPVR----PVLITNESVTVLRQAASGGG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IAL+  +       L R   +++ P +       ++  YP       K++AF  F+    
Sbjct: 236 IALVSTHYTAR--RLERNELEIVLPDWHRTDDVELHVLYPRRATLDSKVRAFVEFLAEVF 293

Query: 295 RDWK 298
            DW+
Sbjct: 294 DDWR 297


>gi|300705531|ref|YP_003747134.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299073195|emb|CBJ44553.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 312

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+ G    
Sbjct: 7   MRVFAKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   ++  +      S    G LRI   +  G ++L   L  F  LYP++   + 
Sbjct: 67  QRCQQVLLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDVA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P   +++ 
Sbjct: 127 LSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMIMAATPAYLRQHTTPQRAEDIT 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246
            H +I      P+   ++   A   + I  P    L V S   +M   VL   GIA+L  
Sbjct: 187 DHRVIAMWH--PQLRHEWEMSAPDGQSIAVPVQPSL-VTSNAELMHRAVLADMGIAILSS 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A + K
Sbjct: 244 YMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEVK 298


>gi|331661668|ref|ZP_08362591.1| LysR-family transcriptional regulator [Escherichia coli TA143]
 gi|331060090|gb|EGI32054.1| LysR-family transcriptional regulator [Escherichia coli TA143]
          Length = 297

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275


>gi|293607231|ref|ZP_06689572.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292814323|gb|EFF73463.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 301

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 136/290 (46%), Gaps = 12/290 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++   +AR+G  + AA QL ++ +++S++++ +E  +G++LF R  R L+LT +G   
Sbjct: 6   ELQLVVELARAGGMSAAARQLDVTPAAVSKRLAQIEARLGVRLFNRSTRRLSLTAEGEDY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  ++E     +      P G+L++   +  G++ +   + EF   YPD+ +QL
Sbjct: 66  LESARRILAEIEDLDQRIASRQDSPRGRLKVNAPLGFGRSYIAPAIAEFSQQYPDVMLQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D   D  D A+R    +  + LI RK+        A+P YLK    P++  +L
Sbjct: 126 QLTDSPADFVQDAFDVAVRF-GDLPDTRLIARKIAPNRRLVCASPGYLKTHGVPVTPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            +H  I       +  ED    W  T  R     ++   L  N     + + + G GI  
Sbjct: 185 TRHQCIVL-----RQNEDAYSLWRFTRGRRSETVKVRGALSSNDGEVTLTWGLAGLGILQ 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++ +     +  LVR++ED   P   +Y  +PE    + K++ F +F+
Sbjct: 240 RAEWDLARYLRSGRLVRVLEDYALPQADIYAVFPERHHLSAKVRVFVDFL 289


>gi|293413543|ref|ZP_06656192.1| lysR family transcriptional regulator [Escherichia coli B185]
 gi|291433601|gb|EFF06574.1| lysR family transcriptional regulator [Escherichia coli B185]
          Length = 297

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 137/279 (49%), Gaps = 17/279 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQQNGTPSGNIRLSAGEHAARSLVWPKLKPFLRKYPEIS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANSAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVL 237
            EL  H  I     +P     ++W    +R   E +   ++V+  L+       +   + 
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHW--EFER---EGKTLRVKVDGQLTCSPLPERIDAALS 237

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           G GIA +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 238 GFGIACVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275


>gi|312115940|ref|YP_004013536.1| LysR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221069|gb|ADP72437.1| transcriptional regulator, LysR family [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 320

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 135/290 (46%), Gaps = 18/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  +GS + A  +L LS + +S++IS LET +G +LF+R  R L LTE G   +
Sbjct: 7   LEIFARVVTAGSMSAAGRELDLSPAVVSKRISHLETRLGTRLFHRTTRQLQLTETGRGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++  +  +     +  G L+I       +  +   L +FL  YPD+ I++I
Sbjct: 67  ERVVQILATVQEAEAFVSSGHQRAGGSLKITAPTGFSRLHIAPYLGQFLKQYPDLSIEII 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +DI  +  D AIR+ + +  SSL+ +KL        A P YLK    P ++ +L 
Sbjct: 127 ATDMMLDIVREGIDVAIRISE-LDDSSLVAKKLAPCRRLFVATPEYLKEHGTPKTLADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
           KH ++           +  W   V  P G+  +     ++ NS   + Q  V   GIAL 
Sbjct: 186 KHKIL--------VENNVTW--RVQGPEGDVSLKLSGEIKTNSSEIVHQALVTNCGIALR 235

Query: 245 PDYIVKD---NPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + +++   +  LV ++      P   VY  YP+      +L+ F +F+
Sbjct: 236 ATWQIREELLSKKLVHVLPQYREAPGVAVYAVYPDKQYIPTRLRVFVDFL 285


>gi|260462526|ref|ZP_05810733.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031722|gb|EEW32991.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 313

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 138/289 (47%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F   A  GSF  A   L +S S++ + ++ LE E+G++L  R  R + LTE+G  
Sbjct: 23  NGLLAFARTAELGSFIAAGRALGISASAVGKSVARLEQELGVRLLQRSTRRVGLTEEGRL 82

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   ++  +  L  +   P G+LRI+T I +  +LL   L EF+  YP+I++ 
Sbjct: 83  FDERVRRILDDIDDAEAMLSRTRETPRGRLRISTPI-VTYHLLLPVLSEFMARYPEIELD 141

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +++ +D+  +  D AIR    +  S L+ R +    M   AAP YL     P    +
Sbjct: 142 IDFNDRVVDVIEEGIDVAIR-SGELPDSRLVSRPVAPFRMLLCAAPSYLDRHGTPSVPAD 200

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  I F  L    + D  W  T      EP+I S L  N+  ++    + G GIA +
Sbjct: 201 LIRHFGINFRFLNSGRLLD--WPFTTGS--AEPQIRSMLTCNNMEALKGATLAGLGIACM 256

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD++V++   +  L  +++D +         +P     + K++ F +F+
Sbjct: 257 PDFLVREALHDSKLRIVLDDHVDGRGQFRMLWPSNRHLSPKVRVFVDFL 305


>gi|218462259|ref|ZP_03502350.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Kim 5]
          Length = 293

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 138/291 (47%), Gaps = 13/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P++
Sbjct: 61  GGIFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P Q   L+  KL    +  YA+  YL     P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVSSKLTDYALGLYASRDYLARNGRPGD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239
           +  L  H  I +       +ED  + A+++   GE   S    L+ ++ +   +    G+
Sbjct: 180 VDALRAHPRIGY-------VEDLIFTASLNFS-GEVMRSWDAGLKFSTAIGQTEAVRSGA 231

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +L DYI +  P L RI+ + I+     +  Y E  ++  ++++  +F+
Sbjct: 232 GIGILHDYIARQYPELQRILPE-ISIRRAYWTTYHETARDLVRVRSVVDFL 281


>gi|66044803|ref|YP_234644.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255510|gb|AAY36606.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 309

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 138/288 (47%), Gaps = 15/288 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA  GSFT AAE+L+L+ S+IS+ I+ LE  +  +LF R  R L+LTE G   +R 
Sbjct: 12  VFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRT 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + V   LE  +I L  +  +P GK+RI      G+  +   + +F+  +P +Q  +   
Sbjct: 72  CTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDK 188
           ++ +D   +  D  +R+       + I  +        + A+P Y+K   +P ++ +LD 
Sbjct: 132 DRYVDPVHEGIDIVVRIGGSDAWPAAIAHQFFGTQKLIFCASPEYVKQYGQPKTVSDLDD 191

Query: 189 HNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           H  I +G      IP   +       ++R I  P I+   V      +   + G GIA L
Sbjct: 192 HQCIGYGQNDGMAIPWYFKGRQ-PGDMERRIMHPHIA---VGDGEGEVMAVLAGLGIAQL 247

Query: 245 PDYIVK---DNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAF 286
           P ++V+   ++  LV ++ D+ T   P   V+    EAL     L A+
Sbjct: 248 PTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAY 295


>gi|170738153|ref|YP_001779413.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820341|gb|ACA94923.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 300

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G +  
Sbjct: 4   LHVFMTVATAGNFTRAAAGLGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
           R T   Y ++   + EL+++  +P+G LR+ T + L + L+    L  F   YP +++++
Sbjct: 64  RQTEPAYRQVMQARDELKDARSEPNGLLRV-TALPLARLLVIAPVLATFRERYPKVRLEI 122

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             DN+ +DI+ D  D  IRL   +Q   +  R    +     A+P YL     P SI  L
Sbjct: 123 HYDNELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPAYLARHGTPESIAAL 182

Query: 187 DKHNLITF 194
            +H  I F
Sbjct: 183 GRHACIRF 190


>gi|168799778|ref|ZP_02824785.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|195937785|ref|ZP_03083167.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|189377865|gb|EDU96281.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
          Length = 307

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++ +++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 14  FALIVRAGSFSRAASEMGITLAALSQNLKSLEERLNTKLIYRTTRNISLTEEGQRLYEVL 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 74  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 133

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 134 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 187 QELSNHNCLRLRHKSSGALSAWEFSKVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 243

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 244 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 301


>gi|186474924|ref|YP_001856394.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191383|gb|ACC69348.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 312

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 147/289 (50%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  A+E++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRHVVEVGSFVGASEKMDMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +L+  +  +  +SV P G+LR+++    G   +   + ++   +P + + + 
Sbjct: 67  ERLSQVLSELDEAEQAVGAASVVPQGRLRVSSLSAFGLRHVMSAVADYATQHPQVTVDIT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R++ T H+   A+P Y++    P S  +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARQVATAHLVLCASPEYIERHGAPKSAADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
            +HN+I +       +     +A  +   G  ++S   + ++L   +  VL G+ +ALL 
Sbjct: 187 TRHNIIQY-----SGVSALELVAGANAESGRVKLSGNLIVNHLEAQRVVVLQGAALALLG 241

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
             ++ D+     +V ++ D + P    ++  Y      + K+++F +FI
Sbjct: 242 TEVIGDDLAAGRVVPLLIDELPPRELPIHVVYASRRHLSAKVRSFVDFI 290


>gi|288936001|ref|YP_003440060.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890710|gb|ADC59028.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 301

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L+ F  V  +GSFT AA+ L +  +++S+ I  LE  +G+ L  R  R +T+T +G 
Sbjct: 4   FSALKAFTRVVEAGSFTRAADSLDMPNATLSKTIKQLEAHLGVSLLQRTTRRITVTPEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +   LE        +  KP G LRIA       ++L   L EF+  +PDI+I
Sbjct: 64  EYYEKARCLLEDLEEIDASFNTAHNKPKGHLRIAIGGSTACDVLIPLLAEFMTAWPDIRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +K  D+     DCAIR   P++ S+LI RK+    +   A P YL+ C  P S  
Sbjct: 124 DLQVADKPADLISGNIDCAIR-GGPMEDSTLIARKIGEATLVTCAPPGYLQRCGTPASPD 182

Query: 185 EL-DKHNLITF 194
           EL   H LI++
Sbjct: 183 ELHHGHQLISY 193


>gi|187776100|ref|ZP_02800405.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188024809|ref|ZP_02774174.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|189010526|ref|ZP_02807660.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189402200|ref|ZP_02780862.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189403312|ref|ZP_02794663.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189405144|ref|ZP_02813580.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|208806663|ref|ZP_03249000.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208815417|ref|ZP_03256596.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208822915|ref|ZP_03263233.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209396927|ref|YP_002268923.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|187769114|gb|EDU32958.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188016471|gb|EDU54593.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|188999905|gb|EDU68891.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189356867|gb|EDU75286.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189361300|gb|EDU79719.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189371629|gb|EDU90045.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|208726464|gb|EDZ76065.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208732065|gb|EDZ80753.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208737108|gb|EDZ84792.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209158327|gb|ACI35760.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|326347251|gb|EGD70977.1| Putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. 1125]
          Length = 308

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 150/300 (50%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++ +++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 15  FALIVRAGSFSRAASEMGITLAALSQNLKSLEERLNTKLIYRTTRNISLTEEGQRLYEVL 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 75  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSKVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302


>gi|170704271|ref|ZP_02894826.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170130819|gb|EDS99591.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 307

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 134/291 (46%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AAE L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAKAAELLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAELIESEASAQALEPHGLVRVNAPMSFGLRHLSPLLPAFLERYPRVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     A+P YL     P   
Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLDRHGRPTHP 184

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++++H  +T+ +L  P+     N  +  D  +G      ++ N+   I    + G G+A
Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRNPASGED--VGVSVHGRIRTNNADVIAPALLTGHGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L P+++  D   +  L  +M +       V    P  +    ++    +F+
Sbjct: 243 LQPEFLAWDALQSGELEEVMPEWKIADVNVNLVTPPGMLRAARVTVLLDFL 293


>gi|292491695|ref|YP_003527134.1| LysR family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291580290|gb|ADE14747.1| LysR substrate-binding protein [Nitrosococcus halophilus Nc4]
          Length = 305

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 140/293 (47%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V   GSF+ AA ++  S+S++S+ ++ LE  +G +L  R  R L+LTE G
Sbjct: 3   DLNLMAIFARVVEVGSFSEAARRMDTSRSAVSKAVAKLEKSLGARLLNRSTRHLSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    + +  + E  +  +     +P G LR++ ++  G   +   L +F+  YP+I+
Sbjct: 63  AALVEHAARILEEAEQAERVVSSLHAEPRGMLRVSVSVAFGTLHIAPALADFVARYPEIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + + ++ ID++ +  D  IR+       +L+ RKL  +H    A P Y      P + 
Sbjct: 123 IDMAITDRPIDLAEEGYDVIIRVTGE-PDLNLVARKLAPVHRKLCATPEYFLRRGIPRTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ +   D      + +      +  I  P    L++N   ++ Q  + G GIAL
Sbjct: 182 EDLVNHDCL---DYTLSGEQGYWHFTGPEGKIAVPVSGPLRINDDDALSQAVLGGLGIAL 238

Query: 244 LPDYIV-KD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP + V KD     L  ++ + +     +Y  Y        K++AF +F+  +
Sbjct: 239 LPTFTVGKDLQEGRLQAVLSEYLPVERYIYAMYLPTRHLPAKIRAFIDFLLAR 291


>gi|115358894|ref|YP_776032.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284182|gb|ABI89698.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 299

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 136/290 (46%), Gaps = 14/290 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +F  AA++L ++Q ++++Q+  LE  V ++LF R  RGL LT +G +
Sbjct: 14  NALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDVVAVQLFRRLPRGLALTREGLE 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S V   L+           +P+  L ++TT       L   L +F  L+PDI+++
Sbjct: 74  YF---SSVQRALQIISDATDALGERPT-VLAVSTTPSFASKWLIPRLADFGRLHPDIEVR 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D +      D  D AIRL KP   + L    L  + + A A+P  L +     +  +
Sbjct: 130 VIADERLASFRADGVDIAIRLSKPPFPAGLAAELLAPLDIFAVASPKLLDSGPPIRTPAD 189

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    DL P+ +E        D P   PR S     S L+I    V G GIAL 
Sbjct: 190 LSTHALLHDAHDLWPEFIEKLGGKGRAD-PTKGPRFS----QSLLAI-DAAVAGQGIALT 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + +V+ +     L R+ +     S   Y  +P+A  ++  L+A R ++F
Sbjct: 244 SEPLVERDIAEGRLRRVFDFSFPMSLGFYVVFPQANAHSEALQAMRRWLF 293


>gi|239996656|ref|ZP_04717180.1| LysR family transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 327

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 145/289 (50%), Gaps = 8/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V   GSF+  A++L+L+ S +S++I+ LE+++ ++L YR  R L LT+ G  
Sbjct: 31  DDIILFVNVVDEGSFSKVAQKLNLTNSVVSKRIARLESDLNVQLLYRSTRKLNLTDAGRT 90

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         ++  +  +   S +  GK+RI       + +L   + EF  L+ ++ ++
Sbjct: 91  LYNKARIANLAIQDAEDAVSGYSDEVRGKIRITMPNVSAKLVLNRAIAEFCNLHEEVDVE 150

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + N+  +I  +  D AIR    ++ SSLI ++L+       A+P YLKN   P    +
Sbjct: 151 LAITNRVTNIIEEGYDLAIRTAH-LEDSSLIAKRLIDSKWIVCASPTYLKNKSRPNHPDD 209

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +HN + +         DF W   ++  +   +I   +Q N+  ++ Q  + G G+A L
Sbjct: 210 LTEHNCLIYK--YDSTGPDF-WPFHIEGELHNVQIGGRIQSNNLDALRQAAIAGVGVAFL 266

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V    ++  L  ++ + +T +  +Y  YP + +   KLK   N++
Sbjct: 267 PKALVHEDIEDGALSPLLAEYVTKTMGIYAVYPRSRQPDKKLKLLVNYL 315


>gi|325291697|ref|YP_004277561.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325059550|gb|ADY63241.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 305

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 21/299 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   VA   SF  AA +L ++ S++S  +S LE  +G++L +R  R ++ TE+G +L
Sbjct: 17  QLAVLAAVAEGRSFRKAAAELAIAPSAVSHAVSSLEASLGLRLLHRTTRSVSPTEEGRRL 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    +++     L E   +P+G LRI       ++L+   L EFL LYPDI +++
Sbjct: 77  LETLGPALAEIDAVIDTLAEHGGRPAGPLRITLPRLAAEDLIMPRLGEFLRLYPDISLEI 136

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             D++  DI     D  +RL + +++  +  +           AP Y +    P   ++L
Sbjct: 137 STDDRFEDIVAKGFDAGLRLGENLEADMIAVKASGPWRGAIVGAPTYFEENLPPREPRDL 196

Query: 187 DKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLG 238
            +H  I    + G L       + W    D   G P +  +Q    LS    I +  + G
Sbjct: 197 MRHRCILRRFSSGLL-------YRWELEKD---GRPLVVDVQGPLILSDQSLIRRAAIDG 246

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +G+A + +  V D+     LVR++ED   P    Y  YP   +    L+AF +F   + 
Sbjct: 247 AGLAFVFEQRVDDDIKEGRLVRVLEDWCAPFDGFYIYYPSRRQMRPALRAFVDFFRFRG 305


>gi|163743792|ref|ZP_02151165.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161382941|gb|EDQ07337.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 292

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R +  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHVDAIEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+      SG+L + T++     LL   L EF   +P++ 
Sbjct: 63  QDLLRVAQATDDQFGQLVGRLKGHGDAVSGEL-VVTSLSSMSTLLVPALTEFQRRHPELV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+ +  ++   +    A  AIR   P +    + +  +      YA+  YL+       +
Sbjct: 122 IRFLTGSRLFRLEYGEAHVAIRAGSPPEQPDNVVQPFMRQQHGLYASASYLERFGPLKGL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGS 239
            ++  H  I        C +D +  A   R +     E  +S   VN+ +S+ +  + G+
Sbjct: 182 DDMANHRFI--------CNDDIDSRAPYSRWLRAHAPESALSFRCVNA-VSMQEALLAGA 232

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           GI  L  +    +P L +IME +   +  ++      L  T K+++F +F+  +A+ W
Sbjct: 233 GIGFLTRWEAARHPGLTQIMEPLPEWAGELWLVTHVDLHRTTKVQSFLSFLKAEAKAW 290


>gi|115351324|ref|YP_773163.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115281312|gb|ABI86829.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 324

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AAE L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 23  DLEAWAIFARVAETGSFAKAAELLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 82

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 83  ELLRDRAIRLLADAELIESEACAQALEPHGLVRVNAPMSFGLRHLSPLLPAFLERYPRVD 142

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     A+P YL+    P   
Sbjct: 143 IDLVLTDNIVDIVSGGFDIAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLERRGRPTHP 201

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L++H  +T+ +L  P+     N  +  D  +G      ++ N+   I    + G G+A
Sbjct: 202 RDLEQHVCLTYTNLPTPEHWRFRNPASGED--VGVSVQGRIRTNNADVIAPALLAGHGLA 259

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L P+++  D   +  L  +M +       V    P  +    ++     F+
Sbjct: 260 LQPEFLAWDALQSGELEEVMPEWKIADVNVNLVTPPGMLRAARVTVLLEFL 310


>gi|323498510|ref|ZP_08103503.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323316399|gb|EGA69417.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 296

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 114/204 (55%), Gaps = 3/204 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F   A+ GSF+ A  +L +S +++S+ ++ LE + G++LF+R+ R  +LTE G+ L
Sbjct: 5   QLPLFIAAAQEGSFSAAGRKLGISAAAVSKGVAALEKQTGVRLFHRNTRQFSLTEDGANL 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++  S +  +LE +   L E +   +GKLR+      G+  +  ++ +FL L+P+I++ L
Sbjct: 65  YQKVSPLLLELEQSIDGLTEQNRSAAGKLRVNIPDSFGRRFVMPHIAKFLRLHPNIELDL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +D+  +  D ++  R   + S L+ R +  +    +A   Y++   +P +I+EL
Sbjct: 125 VLSDRVLDVVDEGFDVSVGNRIN-EDSRLVARPIYDMQSGIFAHRDYVEQFGQPKTIEEL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLAT 210
             HN I +  L       +NW  T
Sbjct: 184 SHHNCIIYRPL--SSGRTYNWALT 205


>gi|87121801|ref|ZP_01077687.1| putative transcription regulator protein [Marinomonas sp. MED121]
 gi|86162830|gb|EAQ64109.1| putative transcription regulator protein [Marinomonas sp. MED121]
          Length = 300

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M +  +K+R   VF  V   GSF  AAE L+LS++++S+ I+ LE E+   L  R  R L
Sbjct: 1   MVYKMNKIRALTVFRRVVELGSFKGAAEDLNLSKAAVSKNINELEEELQSPLINRTTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            +TE G   ++    V   L+     + ES     G L+I+  + LG   +   + +F+ 
Sbjct: 61  HITESGRLYYQQVCHVLDCLKNADQSIIESLNTLKGTLKISVPMSLGIIEINPIIFDFMA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++++++K +D+     D +IR    +  SSL  RKL  +     A+P YL   
Sbjct: 121 EHPDLHVEVVMNDKYVDLIEQEIDISIRGGGVLNDSSLRSRKLTDMKRVLCASPDYLAQA 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYC 235
            +  S  +L  HN + +       +    WL   +  + E  ++      N+ L + Q  
Sbjct: 181 SKLNSPDDLVDHNCLIYS----FSLSARRWLFKYNDQVKEVELTQGSFIANNGLVLKQAA 236

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LG GI LLPD  V    +   LV ++        ++Y  YP   + + K++AF +F
Sbjct: 237 CLGHGIVLLPDLFVNNEIEQGQLVEVLPQWSADKHSLYLVYPFHKEKSHKIRAFIDF 293


>gi|220919656|ref|YP_002494959.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
 gi|219952076|gb|ACL62467.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 310

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 139/299 (46%), Gaps = 15/299 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR+GSFT AA QL +SQ ++S+ + GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLFAFIAVARTGSFTRAAAQLGVSQPALSQTVRGLEARLGVRLLTRTTRSVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +     + ++E     L E   KP+G +RI  T      +L   LK  L  YPDI+++
Sbjct: 67  LLKAVGPRFAEIEAGLAMLAELRGKPAGTVRITATEHAANTVLWPTLKRVLPEYPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    DI  +  D  +R    +       R    + M A AAP Y     +P   ++
Sbjct: 127 IAVDYGLTDIVAERFDAGVRYGGTVAKDMTAVRIGPDVRMAAVAAPAYFAGRSKPERPED 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H+ I     +P     + W    ++   E R+     L  N+   I+   + G GIA
Sbjct: 187 LTIHDCINL--RLPTRGGLYAW--EFEKDGRELRVWVEGQLVFNTVTLILLAALDGFGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            LP+  V+   D   LVR++ED   P F+ Y  Y  + +   +  A    + ++A  WK
Sbjct: 243 YLPEDGVQAHLDTGALVRVLEDWCEP-FSGYHIYYPSRRQPAQALA----VLVEALRWK 296


>gi|145298143|ref|YP_001140984.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850915|gb|ABO89236.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 299

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 144/290 (49%), Gaps = 10/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           LRVF  V   GS + A E+L +S++ ++R ++ LE  +G +L +R  R L+LT  G + L
Sbjct: 7   LRVFVSVVEQGSLSGAGEKLEMSRAMVTRYLAELEQWMGARLLHRTTRRLSLTGPGEEAL 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R  + +    E  QI ++     P G+LRI ++  L + LL G   ++L  Y    I +
Sbjct: 67  NRARAMLALGEEMEQIAIRGDEA-PKGQLRITSSYSLSEALLVGAANDYLAQYAGTAIDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +++  +  D AIR+   +   +L+ R+L T H    A+P YL     P  +Q+L
Sbjct: 126 LLLDRTVNLVEERIDLAIRITNDL-DPNLVARRLGTCHSVVCASPAYLARHPTPQKVQDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +T+     K + +F   A    P   P    L  N    +++  + G+GI++ P 
Sbjct: 185 ALHNCLTY-TYFGKSLWEFQGPAG---PESVPVSGNLSANISNLLLEATLGGAGISMQPR 240

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y  +   ++  LV ++         VY  Y    + +  L++F +F+ ++
Sbjct: 241 YSAQPHLESGALVPLLSQWQPKRLGVYGVYGTRKQMSPLLRSFLDFLVVR 290


>gi|52842501|ref|YP_096300.1| LysR family transcriptional regulator [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52629612|gb|AAU28353.1| transcriptional regulator, LysR family [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 306

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 138/297 (46%), Gaps = 9/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  FY+V    SFT A   + +++S ISR+IS LE+ +G++L +R  R L LT+ G
Sbjct: 4   DLNDLYFFYLVVEQRSFTKAGRSIGITKSKISRRISELESRLGVRLLHRSTRKLALTDIG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +  + ++ Q  ++    KP G++R+       Q+     +  F+  Y ++ 
Sbjct: 64  QIFYQHCKAMVDEAQSAQEAIELVQSKPRGRIRVTCPALFAQSTFTDIITRFMQQYQEVT 123

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   ++ +D+  +  D AIR +    + S+L+ RKL        A+P YL +   P +
Sbjct: 124 IVLNATDRPVDLFQEGFDVAIRFQANTFEDSTLVVRKLGLSFSSLIASPTYLNHHGTPQT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H    F     + M  F       R I       L+ N +L + Q  +   GI 
Sbjct: 184 PQDLVNH--ACFAKTRNEGMSQFLLTHNDGRQISVHFQPILESNEWLVLKQAALSHLGIT 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++P  I +   D+  LV I+ +   P  ++Y  YP      G + A R+FI   A +
Sbjct: 242 MMPQEICRKEIDSGLLVPILTEWSLPKASLYIIYP---SRRGLIPAIRSFIDFVAEE 295


>gi|26988125|ref|NP_743550.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24982855|gb|AAN67014.1|AE016330_3 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 302

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 135/298 (45%), Gaps = 16/298 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L  R  R L+LT  G +
Sbjct: 5   NAMRVFVTVIDLGSQSAAADYLQLSRPVVSRYLAELEDWVGTRLMQRTTRKLSLTAAGQE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++       Q  +Q+    P G LRI+ +   GQ  L   +  ++  +PD++++
Sbjct: 65  TLPRCRQLLELAGDLQAAVQQPEDAPRGALRISVSTSFGQAQLVDAVAAYVRRFPDVKVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  D AIR    +   SLI R+L        AAP YL     P  ++E
Sbjct: 125 LQMLDRTVNLVDERIDLAIRTSNDV-DPSLIARRLSVCRSVVCAAPAYLNERGTPQRVEE 183

Query: 186 LDKHNLIT---FGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  HN +T   FG  +        W  A   + +  P    +  N  +++ +  + G+GI
Sbjct: 184 LSLHNCLTHAYFGHSL--------WHFAVAGQQVAVPVSGNISANEVMTLQRAALAGAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +LP Y   D      LVR++ +       +   Y         L++  +F+  + +D
Sbjct: 236 TMLPTYQAADAIRRGELVRLLPEAKPRELNLNAVYTSRKHMPATLRSMLDFLVQRFKD 293


>gi|170683135|ref|YP_001742432.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|170520853|gb|ACB19031.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
          Length = 297

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNSTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275


>gi|126738045|ref|ZP_01753766.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126720542|gb|EBA17247.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 292

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 144/298 (48%), Gaps = 14/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+    + SG+L + T++    +LL   L EF  ++P + 
Sbjct: 63  QDLLRVAQATDDQFSQLVGRLKGQGDEVSGEL-VVTSLSSMSHLLVPVLSEFQQMHPGLV 121

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I+ +   +   +    A  A+R    P Q  +++Q   +   +  +AAP Y++       
Sbjct: 122 IRYLTGERLFRLEYGEAHVALRAGNAPDQPDNVVQ-PFLKHRIGLFAAPSYVERRGMLKG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++L  H  ++  +   +    FN WL   T D  I        + +  ++I +  + G+
Sbjct: 181 LEDLKNHQFVSADNENSRA--PFNKWLREHTADETI------IFRCSDGVAIREAIMAGA 232

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           GI  +  +     P+LV++M+       +++      L  T K+++F +F+  +A++W
Sbjct: 233 GIGFMSMWEAARRPDLVKMMDPQKEWEGSIWLVTHVDLHRTNKVQSFLSFLKERAKEW 290


>gi|238799135|ref|ZP_04642589.1| Transcriptional regulatory protein [Yersinia mollaretii ATCC 43969]
 gi|238717006|gb|EEQ08868.1| Transcriptional regulatory protein [Yersinia mollaretii ATCC 43969]
          Length = 297

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++          LE     L + +   SG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIADLEQELESLVQLNGTASGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 LELVVDNGFVDIVEGRFDAGIRLGESVDKDMIAVRIGPDMRMAVVGAPSYFAANPVPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       +  N     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEKEGKPLRVRVEGQVTFNQQAERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+  V+D   +  L+++++D   PSF  Y+ Y
Sbjct: 243 CIPEDRVQDYIKSGELIQVLQD-WCPSFPGYYLY 275


>gi|294624608|ref|ZP_06703281.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665268|ref|ZP_06730562.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292601081|gb|EFF45145.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604945|gb|EFF48302.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 369

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 137/297 (46%), Gaps = 17/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++S ++ +  LE  + +KL  R  R + +T  G+
Sbjct: 65  FDAMQAFARVVETGSFTKAAEHLHMSRASATQLVQQLEARLRVKLLNRTTRRVQVTADGA 124

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  ++  P G+LR+     L + +L   L  F   YP+IQ+
Sbjct: 125 AYYERVLRLLADMDDAETSLSVAATSPRGRLRVDVPSPLARLILMPALPAFHARYPEIQL 184

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC IR    I   SL+ R +  +    YAAP YL+    P    
Sbjct: 185 DMGVSDRRVDLIGENVDCVIR-GGAITDQSLMARHVGDLQAGVYAAPDYLQRLGAPTHPT 243

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+  +H  + F        +P  M+  +    V    G   ++    N+YL+     + 
Sbjct: 244 ELENTRHRCVGFMRWGSSTTVPYVMQRGDEAVRVH---GRHVVAADDGNAYLAA---GLA 297

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+  LP Y+      +  LV I +D    +  +   +P     + KL+ F +++ 
Sbjct: 298 GMGVLWLPVYMANAHVASGELVPIFQDWQLEAMPLSIAFPPNRHVSAKLRVFIDWVI 354


>gi|254295506|ref|YP_003061528.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
 gi|254044037|gb|ACT60831.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 299

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 127/264 (48%), Gaps = 18/264 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW+K R F V A  GS + AA  L ++Q ++SRQ+S  E E+G+ LF R  +GL LT
Sbjct: 6   IKFDWNKARAFLVTAEEGSLSAAARALDMNQPTLSRQVSSFEEELGVSLFERVGKGLELT 65

Query: 61  EQGSKL---HRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKE 114
             G +L    R   E    +    T QI+  E  V  S    ++T I      L   + +
Sbjct: 66  PHGLQLVDHVRAMGEAAVQFSLTATGQIDQIEGVVAISASDAVSTYI------LPDMMVD 119

Query: 115 FLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
                P + ++++  N   D+    AD A+R  +PI+   LI RK+  ++   YA P YL
Sbjct: 120 IRRAEPGVILEIVATNTLSDLRRREADIAVRHAQPIE-PDLIGRKVRCVNCWLYATPDYL 178

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            +   P S+ +L+  + I FGD   + ++  N +     P    ++SC        +++ 
Sbjct: 179 ASIGAPASLADLNNADFIGFGDNT-QLLQGLNAIGIPASP-DSFKLSCENGTVSWELVRK 236

Query: 235 CVLGSGIALLPDYIVKDNPNLVRI 258
              G GI ++ + I  + P L+R+
Sbjct: 237 ---GLGIGIITEDIALNFPELIRV 257


>gi|229526399|ref|ZP_04415803.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229336557|gb|EEO01575.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
          Length = 301

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 TDHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|207723833|ref|YP_002254231.1| hypothetical protein RSMK01181 [Ralstonia solanacearum MolK2]
 gi|206589038|emb|CAQ36000.1| hypothetical protein RSMK01181 [Ralstonia solanacearum MolK2]
          Length = 328

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 11/275 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF     +G F  AAE+L LS+S++ + I+ LET +G++LF+R  R   LTE G  
Sbjct: 2   DGVAVFVEAVEAGGFARAAERLALSRSAVGKSIARLETRLGVRLFHRTTRTQNLTEDGQI 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +L   +  L+    + +G+LR+   +  G+  +   L +F   +P ++++
Sbjct: 62  YYERCLRAIEELRVAESLLESGKQEVAGRLRMTMPVLFGRYCIAPILLDFAREHPKLELE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  D  IR     +++ L  R L T      AAP YLK   EP +I+ 
Sbjct: 122 LSFSDRPVDMIAEGFDLGIRSGALGEATGLCARPLATQPKVLCAAPDYLKAHGEPDTIET 181

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H+++     G   P  +   +   T  RP    R   L+V +        V G GIA
Sbjct: 182 LATHDVLIHWRTGHPYPWLLPGADGRLTEVRPASRLRFDDLEVTA-----DAAVAGMGIA 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            LP ++V+D      LV + E     S   +  +P
Sbjct: 237 WLPHWLVRDRIQAGALVALWEKRPAASMDSHAIWP 271


>gi|325928961|ref|ZP_08190122.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|325540650|gb|EGD12231.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 309

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 137/297 (46%), Gaps = 17/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE L +S++S+++ +  LE  + +KL  R  R + +T  G+
Sbjct: 5   FDAMQAFARVVETGSFTKAAEHLDMSRASVTQLVQQLEARLRVKLLNRTTRRVQVTADGA 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +  L  ++  P G+LR+     L + +L   L  F   YP+IQ+
Sbjct: 65  AYYERVLRLLADLDDAETSLSVAASLPRGRLRVDVPSPLARLILMPALPAFHARYPEIQL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC IR    I   SLI R +  +    YAAP YL+    P    
Sbjct: 125 DMGVSDRRVDLIGENVDCVIR-GGTITDQSLIARHVGDLQAGVYAAPDYLQRLGTPTHPT 183

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+  +H  + F        +P  M+  N    V    G   ++    N+YL+     + 
Sbjct: 184 ELENTRHRCVGFMRWGSSTTVPYVMQRGNEAVRVH---GRHVVAADDGNAYLAA---GLA 237

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+  LP Y+      +  LV I +D    +  +   +P     + KL+ F +++ 
Sbjct: 238 GMGVLWLPVYMANAHVASGELVPIFQDWQLEAMPLSIAFPPNRHVSAKLRVFIDWVI 294


>gi|91790042|ref|YP_550994.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699267|gb|ABE46096.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 322

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR F V   V   GSFT AA+ L  S ++++R I+ LE  +G +L  R +R L+LTE 
Sbjct: 2   DRLRAFEVFASVVSRGSFTRAADALDTSPANVTRYINELEAHLGTRLLNRSSRKLSLTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+  +  +  ++   +     ++++P G+LRI   +  G   L      F+  YP++
Sbjct: 62  GEALYERSKSILEEVAEAEALASSATLQPRGRLRINAPVSFGIRHLAPLWPLFMQAYPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +DI  +  D AIR+ +   S+S   RKL T      A+P YLK   +P  
Sbjct: 122 ELDIALSDRVVDIVEEGYDLAIRISR-AGSASHAARKLGTSRNIVCASPAYLKAHGQPEK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  +  G        +++++    RP        +  N+  +  +  + G G+ 
Sbjct: 181 PADLVGHRCL--GYTYAATANEWHFVDDAGRPHMVKVNYVMHANNGDTAREAAIAGQGVI 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P +++ D+     LV +M     P   V   YP     + K++   +F+
Sbjct: 239 WQPAFLIGDDLKAGRLVALMPGYRMPDIDVLAVYPSRRHLSAKVRVMVDFL 289


>gi|325523181|gb|EGD01565.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 300

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 15/304 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+D +R+F  V   GSFT AA  L +  S +SR++  LE ++G++L YR  R +++TE 
Sbjct: 1   MDFDSIRIFLRVVERGSFTAAATLLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     + +     P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYERCLRAEEILLDADRQARALRTAPEGTLRVLVPYSIGLFELEPALAEFRRRYPLV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  SS + R L        A+P YL     P +
Sbjct: 121 QLVLIYDNNPLDLVEHGFDVALRA-GVLTDSSYVARSLGWSQAKLAASPAYLDRVGRPCT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++L +H+L+  G   P        +A    D P+       L  N  +++++    G G
Sbjct: 180 PRDLAQHDLLLVGRDAPGLTLRLTNVAGEVADVPVR----PVLITNESVTVLRQAASGGG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IAL+  +       L R   +++ P +       ++  YP       K++AF +F+    
Sbjct: 236 IALISTHYT--GRRLERNELEIVLPDWHRSDDVELHVLYPRRATLDSKVRAFVDFLAEVF 293

Query: 295 RDWK 298
             W+
Sbjct: 294 TGWR 297


>gi|83945779|ref|ZP_00958122.1| probable transcriptional regulator [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850782|gb|EAP88644.1| probable transcriptional regulator [Oceanicaulis alexandrii
           HTCC2633]
          Length = 295

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 134/286 (46%), Gaps = 15/286 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V     F+ AA  L LS +S+S+ I  LE ++G +L  R  R L LT+ G   +
Sbjct: 7   LEIFRKVVDRNGFSAAARDLGLSNASVSKAIKELEAQLGAQLIVRTTRSLHLTDVGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V   L+     ++  +  P G+LR+A  + LG   LQ  L  F   YPDI + L 
Sbjct: 67  QRVGGVLDALDDADELVRSETASPRGRLRLAAPLSLGLVALQEALLSFCKTYPDILLDLH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  +  D AIR    +  SSL  RKL+++     A+P YL    E    ++L 
Sbjct: 127 MSDAVVDVVGEGFDAAIR-GGNLPDSSLKARKLMSLDRVVVASPDYLARSVELKRPEDLS 185

Query: 188 KHNLITF--GDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H+ + +   +    C+   D   +    RP        L+VNS +++    V G GIA+
Sbjct: 186 RHDALIYSGAEHSETCILKRDGEAVQVQLRP-------RLRVNSSIAVKSAAVEGLGIAV 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            P   V+   +   LV+++ D       +Y  YPE  + + KL+  
Sbjct: 239 TPHVYVRQALEEGALVQLLPDWSIEGRALYVVYPEQREVSRKLRVL 284


>gi|300977336|ref|ZP_07173827.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|300409861|gb|EFJ93399.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
          Length = 315

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 23  NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 82

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 83  ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 142

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 143 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 202

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 203 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 260

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V+   ++  L++++++   P+F  Y+ Y
Sbjct: 261 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 293


>gi|222081165|ref|YP_002540528.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725844|gb|ACM28933.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 299

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 10/273 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +VA   SFT AA +L  SQS++S  I  LET VG++L  R  R L  TE G +L 
Sbjct: 9   LNAFLIVAEERSFTRAAAKLGTSQSALSHTIRRLETRVGVRLLTRTTRSLAPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    + T    L E   KP+G +RI T+      +L   L++FL  YPDI ++L 
Sbjct: 69  ATLKPALDSIGTELSSLGELREKPAGTIRITTSEHAANTVLWPALEKFLPNYPDIHVELS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+   DI  +  D  +RL + +    +  R    I M    +P Y +  + PL  Q+L 
Sbjct: 129 IDSGLTDIVTERFDAGVRLGEALAKDMIATRISPDIRMIVVGSPAYFEQRKIPLVPQDLA 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA-L 243
           +H  I     +      + W   +++   E R+     L  N+   I++    G G+A +
Sbjct: 189 EHQCINL--RLRSAGGLYAW--ELEKDGREVRVRVEGQLAFNNVEMIVRAATAGFGLAFV 244

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYP 274
           + D++ K   +  L+ ++ED  +P    +  YP
Sbjct: 245 MEDHVRKHLADGRLLCVLEDWCSPFPGYHLYYP 277


>gi|13472321|ref|NP_103888.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023067|dbj|BAB49674.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 304

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 134/288 (46%), Gaps = 11/288 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   +  F     +GSFT A E+LH+++S+I + ++ LE  +G++L  R  R L  T +
Sbjct: 4   IDLQGIVAFVQAVEAGSFTGAGERLHVTKSAIGKSVAQLEQRLGVRLLNRTTRSLRPTSE 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +        ++E  Q  L      PSG+LR+   +  G+  +   L E    +P++
Sbjct: 64  GVSYYEACVRALAEIEAAQSLLAARRHVPSGRLRVDVPLAFGRRCVAPVLFEISRKFPEL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++  +++ +D+  +  D AIR+ +   S SL  R++        AAP YL+    P S
Sbjct: 124 TVEISFNDRRVDLIEEGIDLAIRMGELDDSLSLAARRIYAQRSAICAAPAYLEEHGRPRS 183

Query: 183 IQELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++L  H++I +G    + P+ +   +   T   P        L +     ++   + G 
Sbjct: 184 VEDLAHHSVIGYGREGVVSPRVIRHGDGRQTTFAPKAR-----LVLGHGEPMLDAALAGC 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           GIA LP ++  D+    +L  ++ D    +  V+  +P     T K++
Sbjct: 239 GIAFLPTWLAADSLRHGDLEMVLSDCEVENIAVHAVWPVTRALTPKVR 286


>gi|269104878|ref|ZP_06157574.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161518|gb|EEZ40015.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 295

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 135/294 (45%), Gaps = 15/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F      GSF   AE+  +S   + + I GLE+ +G KL  +  R   LT  G + H
Sbjct: 7   IEIFVRAVELGSFAVVAEERGISAQMVGKHIRGLESSLGTKLLAKSTRYQALTAAGEQFH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   Q ++  +  +P GKL++   ++LG +L+   L +F+  YP ++I+LI
Sbjct: 67  LRCLNILSEMNAAQEDIYRNINEPIGKLKLCCGVNLGISLIAPLLGQFIQQYPKLEIELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN   DI  D  D     R       L+  ++ +  M A A+P YL     P   +EL+
Sbjct: 127 LDNNPPDIQRDGFDVIFHDRVE-GYEFLVGHQICSYDMVACASPEYLHKYGIPKHPKELE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISC-LQVNSYLSIMQYCVLGSGIAL 243
            H  +              W      P GE   PRIS    +NS  +++     G+GI +
Sbjct: 186 HHQCLKHS----TTYHAHRW--CFKGPDGEYFLPRISSRFMINSGQAMLAAAKEGAGITI 239

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            P + V+++ N   L  I+     P   ++  Y  +L+NT +L    +F F+K+
Sbjct: 240 QPRFQVQNDLNSGSLTHILPSYTLPEIELFMLYKPSLRNTSRLILLNDF-FMKS 292


>gi|293605928|ref|ZP_06688298.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553]
 gi|292815715|gb|EFF74826.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553]
          Length = 304

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 18/289 (6%)

Query: 11  FYVVARSG-SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           F+V A S  SF+ A   L +S S++ + +S LE  +G++LF+R  R LTLT +G+     
Sbjct: 9   FFVQAASARSFSQAGRVLGVSSSTVGKSVSRLEERLGVRLFHRSTRSLTLTAEGALFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++E  ++EL ++   P G+LRI+  + +G  L+   L  F+  YP I++ +   
Sbjct: 69  CRRILCEVEAAELELSQTQQAPRGRLRISLPV-VGM-LVTPALAAFMHRYPAIELDVDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L+ R +        AAP YL     P    +L  H
Sbjct: 127 DRVVDVIDEGFDVVMRAAEPTD-SRLMSRPMGHYRQIVVAAPAYLAKRGTPRVPADLTGH 185

Query: 190 -----NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
                 L T G L P  ++     A    P      + +  N+ +S+M   + G GIA L
Sbjct: 186 ACLQYRLPTTGKLQPWPLKRSEADADYTLP------NSMVCNTAISLMDIAISGLGIACL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD++ +   +   LV I+E+ +    T    +P +     KL+ F +F+
Sbjct: 240 PDFMARPAIERGELVPILEEHVQHQGTFRLLWPSSKHLAPKLRVFIDFM 288


>gi|103488524|ref|YP_618085.1| LysR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98978601|gb|ABF54752.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis
           RB2256]
          Length = 310

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 127/263 (48%), Gaps = 14/263 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+ F +VAR G+   A   LH+  +++SRQIS LE  +   LF R   G  LT  
Sbjct: 16  MDWDKLQYFLMVARHGTLARAGAALHVDATTVSRQISALEGALQQTLFERAPTGFVLTAA 75

Query: 63  GSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G  L  V           +I +  ES    SG+LR++ +   G + +   L  F+  +P+
Sbjct: 76  GRAL--VPHAEAMAAAAARIHKADESGAALSGQLRVSVSEGFGNSFIAPRLGRFVAAHPE 133

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L+  +  ++ S   AD A+ L +P +   LI RKL    +  Y AP    + +  +
Sbjct: 134 LEIDLVASSGFLNPSRREADMAVLLARP-RKGPLITRKLADYSLGLY-APADRPDWQAAV 191

Query: 182 SIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           +   L +  +   G  IP  +   + ++L  +     EP + + ++ +S L+  +    G
Sbjct: 192 AATPLSRAGIPVIG-YIPDILYAPELDYLGEI-----EPGLRATVRSSSILAQRRMIAGG 245

Query: 239 SGIALLPDYIVKDNPNLVRIMED 261
            G+ +LP ++   +P LVR+  D
Sbjct: 246 GGVGVLPCFLASGDPALVRVRPD 268


>gi|320324654|gb|EFW80728.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320328764|gb|EFW84763.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330881993|gb|EGH16142.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 298

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA + SFT A ++L +S S + + I  LE  +G++LF+R  R + +T +GS     
Sbjct: 9   VFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEEGLGVRLFHRSTRSIAMTLEGSIFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LET ++EL  +   P G+LRI  ++ L   L+   + EF+  YPDI++ +   
Sbjct: 69  CRRILSELETAEMELSNARDLPRGRLRI--SLPLVSGLVMPVIIEFMRTYPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R   P   S L+ R++    +    AP Y      P    +L +H
Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSRRMGGFQLKIVGAPDYFFRRGTPQHPADLSRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +      P   +  +W   + R  G   +   QV   N+   ++     G GIA LPD
Sbjct: 186 ACLLHK--FPSSGKFEHW--PLRREAGADDLDLPQVMVCNTTEILVDVARAGLGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++     +  LV I+ D    + +    +P +   + +L+ F +F+
Sbjct: 242 FMISSAIRSGELVPILTDYTVHTGSFRLLWPSSKHLSLRLRVFIDFM 288


>gi|307728942|ref|YP_003906166.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583477|gb|ADN56875.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 305

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE G+
Sbjct: 4   FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++   +  L      P G +R+ T+  L + LL   L +F   YP+I +
Sbjct: 64  LFYDRCVRILAEVADAESSLSNKRENPVGTIRVDTSGTLARALLLPALDDFYRRYPEIDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +++ID+  D  DC IR+  P + SSL+ R++    +   A+P YL+    P ++ 
Sbjct: 124 RLGLADRNIDLIQDAVDCVIRMGTP-EESSLVARRIGHARIVTCASPAYLEKYGTPTTLD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  + +  +  +  + F +   V+  I +  + S L VN     ++   LG GI  
Sbjct: 183 QLSEHRAVNY--VSARTGKTFPFEYEVNGEIAKVTMKSVLAVNDGSVYIRAGALGHGIIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++V    +   L  I+ D  +P   +   Y      + +L+AF  ++
Sbjct: 241 PSRFMVAHLIERGVLKEILTDYTSPGTPLSILYAHRRNLSSRLRAFTEWV 290


>gi|326385562|ref|ZP_08207196.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209896|gb|EGD60679.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 307

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 5/197 (2%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           + F  D+ R   +F  VA  GSF+ A   L L+ S++SR I  +E  +G++L  R  R L
Sbjct: 11  VRFHADRARSLELFATVAAEGSFSAAGRVLGLTPSAVSRAIDRIEVRLGVRLLLRSTRAL 70

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT +G+   R    +   L+  +  + +S+  P G+LR++  +  G+  +   L EF  
Sbjct: 71  TLTTEGAAYLRAARRILGDLDDAEQAIADSAA-PRGRLRVSAALAHGRLCIVPLLGEFAR 129

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP I + + L ++ +DI    AD AIR   P+  S+L  RKL        A+P YL+  
Sbjct: 130 LYPHILVDISLGDRLVDIGAGQADVAIRF-GPLADSTLTARKLGENRRVVVASPAYLERH 188

Query: 178 REPLSIQELDKHNLITF 194
             P   ++L  HN + F
Sbjct: 189 GTPQVPEDLHDHNCLGF 205


>gi|299069754|emb|CBJ41033.1| putative transcription regulator protein, LysR [Ralstonia
           solanacearum CMR15]
          Length = 311

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 134/294 (45%), Gaps = 18/294 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     V   G F  AA +L L+ SS++RQ++ LE  +G  L  R  R +TLTE G + +
Sbjct: 7   LNALMAVVEHGGFAPAARRLGLAPSSLTRQLNALEDSLGTLLLNRSTRTVTLTEAGQQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE     + E +  PSG LRI+  +  G+  +   L  FL  +P +++ + 
Sbjct: 67  EDARSILDALENADRSVSELAGPPSGLLRISLPVAFGRLHVAPALPAFLRRFPGMRLDIQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   ++  +  D AIRL  P  S +L+ RKL        A+P YL     P    +LD
Sbjct: 127 LSDTVANLVEERIDVAIRLGAPA-SQNLVARKLAPHRRVICASPDYLGEHGAPAQPADLD 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
           +HN + F            W  T+ R     ++     L  N    + +  + G+G+ L+
Sbjct: 186 QHNCLLFD----YATATSTW--TLKRAGKTAKVQVAGNLHANGSELLREAAIGGAGLLLM 239

Query: 245 PDYIVKDNPNLVRIME--DVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
           P ++V ++    R++   +  +PS        ++  Y +  + + KL AF +F+
Sbjct: 240 PTWLVGEDMAAGRLVPVLEAWSPSLGADEEGAIWAVYQQNRRGSKKLAAFLDFL 293


>gi|254437565|ref|ZP_05051059.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198253011|gb|EDY77325.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 296

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 12/293 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW+K R F V A  GS + AA  L ++Q ++ RQ+ GLE E+GI LF R  RGLTLT
Sbjct: 6   IKFDWNKARAFLVTAEEGSLSAAARALGMAQPTLGRQVDGLEQELGIVLFERVGRGLTLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L     ++        +     S    G + I+ +      LL   + +  ++ P
Sbjct: 66  PSGLELLDHVRDMGEAAGRVSLTALGQSQALEGTICISASETYAAVLLPPIIAKLRIMEP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+++++ N   D+    AD AIR  +P +   LI +K+       YA P Y+     P
Sbjct: 126 AIQVEIVVANHASDLRRREADIAIRNFRPTE-PDLIAKKIGDADAILYATPDYIGKIGNP 184

Query: 181 LSIQELDKHNLITF--GDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               +L   + +    G ++ K +      L   + P        L   SYL + +    
Sbjct: 185 TKPYDLRHADFVNMDHGGMMLKGLNTLGLGLTEANFP--------LLTESYLVMWELVRQ 236

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ I +L  +I   +P + R++ D+    F ++      L  + +++   +F+
Sbjct: 237 GAAIGVLDAHIGDADPIVRRVLPDLEPLVFPIWLVAHRELSTSRRIRRVYDFL 289


>gi|53716023|ref|YP_104869.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53721051|ref|YP_110036.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|67642058|ref|ZP_00440820.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|76818084|ref|YP_336676.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121596750|ref|YP_990759.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124381405|ref|YP_001025243.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126446886|ref|YP_001077222.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126457194|ref|YP_001074058.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134284058|ref|ZP_01770753.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|166998999|ref|ZP_02264849.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167721907|ref|ZP_02405143.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167821636|ref|ZP_02453316.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167826451|ref|ZP_02457922.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167847965|ref|ZP_02473473.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167896518|ref|ZP_02483920.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167908380|ref|ZP_02495585.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167913202|ref|ZP_02500293.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167921148|ref|ZP_02508239.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|226193531|ref|ZP_03789136.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237509204|ref|ZP_04521919.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242313913|ref|ZP_04812930.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254179136|ref|ZP_04885789.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254185558|ref|ZP_04892145.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254192091|ref|ZP_04898589.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254192673|ref|ZP_04899109.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254204288|ref|ZP_04910646.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254209455|ref|ZP_04915800.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254265129|ref|ZP_04955994.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254301864|ref|ZP_04969306.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254359579|ref|ZP_04975851.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52211465|emb|CAH37455.1| putative LysR-family regulatory protein [Burkholderia pseudomallei
           K96243]
 gi|52421993|gb|AAU45563.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76582557|gb|ABA52031.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|121224548|gb|ABM48079.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|126230962|gb|ABN94375.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126239740|gb|ABO02852.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134244669|gb|EBA44768.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147744825|gb|EDK51907.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147749975|gb|EDK57047.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148028766|gb|EDK86726.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157825034|gb|EDO88926.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157987571|gb|EDO95338.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160694654|gb|EDP84663.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169649428|gb|EDS82121.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184209792|gb|EDU06835.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|225934413|gb|EEH30395.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|235001409|gb|EEP50833.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238523121|gb|EEP86561.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242137152|gb|EES23555.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243064817|gb|EES47003.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254216131|gb|EET05516.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|261826302|gb|ABM99172.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 305

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 144/292 (49%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE G +
Sbjct: 8   DDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++  T ++   ++    ++  +   P G LRI+++   G+++L   L  F   YP + ++
Sbjct: 68  VYAWTEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLGFNERYPQLNVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  IR+   I +  LI ++L T +    A+P YL     P  + +
Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-ADHLIAKRLATNYRVLCASPGYLARYGTPRQLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L  H  +     I +    F  W  TV       ++   L  N     +Q+ + G GI L
Sbjct: 187 LGAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               I +  P      L R++ +   P+  V+  YP  L  + K++   +F+
Sbjct: 243 --RSIWEAGPLLASGELRRVLPEASQPA-NVWAVYPARLAASAKVRVCVDFL 291


>gi|293403417|ref|ZP_06647508.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|293408441|ref|ZP_06652280.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298379028|ref|ZP_06988909.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300896274|ref|ZP_07114818.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|301020069|ref|ZP_07184199.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|281177480|dbj|BAI53810.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|284920105|emb|CBG33164.1| LysR-family transcriptional regulator [Escherichia coli 042]
 gi|291429270|gb|EFF02290.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|291471619|gb|EFF14102.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298280141|gb|EFI21645.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300359815|gb|EFJ75685.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300398946|gb|EFJ82484.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
          Length = 297

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275


>gi|197248414|ref|YP_002147807.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197212117|gb|ACH49514.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 303

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 144/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V     +  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 235 GSGVALLPQWLVNTALGDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|241663121|ref|YP_002981481.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240865148|gb|ACS62809.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 308

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 135/295 (45%), Gaps = 18/295 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT+ G  
Sbjct: 7   ETMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQLTQDGQA 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   ++  Q   ++S     G+LR+   + + + ++   L   L  +P+++I+
Sbjct: 67  FYERCQDLLADMDELQTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAHPELEIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D   +  DC +R+   +  SSLI R L  +H    A+P Y+     P ++ +
Sbjct: 127 LSSTDRRVDPVREGFDCVLRIGT-LTDSSLIARPLGQLHQVNCASPAYIARYGMPRTLDD 185

Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LD+H ++    T G   P       W  TVD R    P    + V+S  S    C  G G
Sbjct: 186 LDRHRIVHYVQTLGTKSP------GWEYTVDGRSAFRPMKGAVTVSSAESYDAACRAGLG 239

Query: 241 IALLPDY-----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   P Y      + D   LV +M D   P   V   YP       +++ F N++
Sbjct: 240 MIQAPVYAGLSSAIADG-TLVDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWM 293


>gi|309379472|emb|CBX21838.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 299

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 138/298 (46%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S+ISR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAISRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEVPQGVLRVDSAMPMVLHLLVPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVVASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S +EL  H  + F +         N  A +D      +IS     S   I++  C+ G 
Sbjct: 180 QSTEELAGHQCLGFTE-----SGSLNTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++V ++       P L     D   P   VY  Y +   N  +L+ F +F+
Sbjct: 235 GIACLSDFLVDNDIAERKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFV 289


>gi|262191780|ref|ZP_06049953.1| transcriptional regulator [Vibrio cholerae CT 5369-93]
 gi|262032358|gb|EEY50923.1| transcriptional regulator [Vibrio cholerae CT 5369-93]
          Length = 300

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELGVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 AEHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|255261546|ref|ZP_05340888.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
 gi|255103881|gb|EET46555.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
          Length = 292

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 14/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AA+ L +  +++ R I  LE  +G KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAADVLGVHHATVIRHIDALEIRLGAKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L RV      +       ++      SG L + T+I+    LL   L EF   +P++ 
Sbjct: 63  TDLLRVAQITDDQFSQLMGRIKGQGQGVSGDL-VVTSINALSPLLTPVLTEFQEEHPEVC 121

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +  ++ + +    A  AIR    P Q  +++Q   + + M   A+  Y++   +P  
Sbjct: 122 VRFLTGDRVLRLEYGEAHVAIRAGTAPDQPDNVVQ-PFIKLGMRLVASKGYIEKYGKPDE 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WL-ATVDRPIGEPRISCL-QVNSYLSIMQYCVLGS 239
            ++L  H +I   D        F+ W+ ATV      P  + + +V    +++   V G+
Sbjct: 181 PEQLKDHKIIGHND--DNSRAPFHKWMRATV------PESAIVYRVTDNRAMIDAVVNGA 232

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           GI  + D++ +++  LV I+         V+      L  T K++AF   +  +A++W
Sbjct: 233 GIGFVSDWVYRNDDTLVEILPSQDDWGAPVWLVTHVDLHRTAKVQAFLTHLKARAKEW 290


>gi|218703580|ref|YP_002411099.1| putative LysR family transcriptional regulator [Escherichia coli
           UMN026]
 gi|218430677|emb|CAR11549.1| putative transcriptional regulator, lysR family [Escherichia coli
           UMN026]
          Length = 311

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 19  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 79  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 138

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 139 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 199 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 256

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 257 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 289


>gi|153801959|ref|ZP_01956545.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|124122534|gb|EAY41277.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
          Length = 301

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPAYFTQCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +T G +     +       +D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 ADHRCLT-GSVKRWSYQHKETKQALDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|311107410|ref|YP_003980263.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310762099|gb|ADP17548.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           141 [Achromobacter xylosoxidans A8]
          Length = 306

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 105/187 (56%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF     +GSF  AAE+L+L++S++ + I+ LE  +G +LF+R  R  +LT+ G   +
Sbjct: 13  IEVFVQAVEAGSFALAAERLNLTRSAVGKSIARLEARLGARLFHRTTRQQSLTDDGQAYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +L+T + EL     +P G+LR++  +  G++ +   L+E  L +P +QI++ 
Sbjct: 73  DRCVRALAELQTAEAELDSGRREPQGRLRVSAPLVFGRHCVAPVLRELALQHPQLQIEIS 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  D  IR+ +   S+SL  R+L    M   A+P Y++    P ++ EL 
Sbjct: 133 FNDRVVDLIEEGYDLGIRVGELPDSASLAARRLGMQTMGIGASPAYIQAHGRPTTVDELT 192

Query: 188 KHNLITF 194
           +H+ I +
Sbjct: 193 QHSCIAY 199


>gi|262276494|ref|ZP_06054303.1| transcriptional regulator LysR family in formaldehyde
           detoxification operon [Grimontia hollisae CIP 101886]
 gi|262220302|gb|EEY71618.1| transcriptional regulator LysR family in formaldehyde
           detoxification operon [Grimontia hollisae CIP 101886]
          Length = 295

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 126/249 (50%), Gaps = 10/249 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  +  F  V  + SFT AA++L  S + ISRQIS LE  +  +L +R  R ++ TE+G
Sbjct: 3   DWQGVSEFLAVVETASFTKAAKRLGASTAHISRQISLLEERLNTRLLFRTTRKVSTTEEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   L+  +I + +    P+G +++   +  G+ ++   + +F+  YP+IQ
Sbjct: 63  DIYYQHCRLLADGLKEAEIAVTQLHETPNGHIKLTAPVTYGEKVVMPLILDFMDAYPEIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + L N  +D+     D A+RL + +  SS++ ++L T  +    +P YL     P ++
Sbjct: 123 IDVDLTNATLDLVDASCDVALRLGR-LTDSSMVCKRLSTRRLIVCGSPAYLSKHGTPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL +HN +       +   D+ W    +      R+   L+ NS ++++   + G G+ 
Sbjct: 182 SELAQHNCL-------RGQHDY-WRFREEGKERSVRVRGLLRCNSGIALLDAAIRGKGLI 233

Query: 243 LLPDYIVKD 251
            LPDY + D
Sbjct: 234 QLPDYYLND 242


>gi|183179541|ref|ZP_02957752.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|183012952|gb|EDT88252.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
          Length = 309

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 6/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  V ++L  R  R ++LT
Sbjct: 14  MLNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLT 73

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP
Sbjct: 74  TEGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYP 133

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + LD+   D+     D  IR+ + + SSSLI R +    +  YA+  YL+N    
Sbjct: 134 KVNFDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLIGRVIAPFELGIYASQTYLENAPPI 192

Query: 181 LSIQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +IQ+L++H+ +    L +P           V   +     S    NS L +M     G 
Sbjct: 193 HTIQDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGL 250

Query: 240 GIALLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  +  +++   P+  LVR+  D    S T+   YP       +++ F +++
Sbjct: 251 GVGSIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 303


>gi|254248311|ref|ZP_04941631.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124874812|gb|EAY64802.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 304

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G +  
Sbjct: 10  LHVFMTVATAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
           R T   Y ++   + EL+++  +P+G LR+ T + L + L+    L  F   YP +++++
Sbjct: 70  RQTEPAYRQVMQARDELKDARSEPNGLLRV-TALPLARLLVIAPVLATFRERYPKVRLEI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             DN+ +DI+ D  D  IRL   +Q   +  R    +     A+P YL     P SI  L
Sbjct: 129 RYDNELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPAYLARHGTPESIAAL 188

Query: 187 DKHNLITF 194
            +H  I F
Sbjct: 189 AQHACIRF 196


>gi|187924756|ref|YP_001896398.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715950|gb|ACD17174.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 312

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YPD+QI+L
Sbjct: 66  LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQERYPDVQIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ L   +  S L+ ++L +    A A+P YL+    P +  +L
Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATSLPDSGLVSQRLGSAFSIACASPAYLERHGVPQTPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS----CLQVNSYLSIMQYCVLGSGIA 242
            +H  +    ++        W+   D P GE  I+      QVN   ++      G G+ 
Sbjct: 186 TRHECL---QMVTPVFPTEKWI--FDGPNGEETIALGATSFQVNVAEAMAVAVSSGMGVG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L+P Y          LV ++ +  +    +Y  YP       K++ +  F+
Sbjct: 241 LIPIYSAISGLRKGELVWLLPEYTSQPMNLYALYPSRQYLDAKIRTWVEFL 291


>gi|167561024|ref|ZP_02353940.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 351

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 134/286 (46%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P +   L
Sbjct: 66  LERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPKVIPDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P   + L
Sbjct: 126 TLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPTHPEHL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            +H  ++         E +        P GE R+   + +  N+   + Q+ +LG G+A+
Sbjct: 186 VEHPCLSLPS------EYWGDERVFTGPDGEVRVRPSNIVVANNTEMLRQFAMLGMGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP Y++  +     LVR++ +   P   +   YP       K++ F
Sbjct: 240 LPSYLIGSDIARGKLVRLLSEYRLPQVEINIAYPSRRHLPAKVRTF 285


>gi|241666657|ref|YP_002984741.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862114|gb|ACS59779.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 317

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 141/302 (46%), Gaps = 14/302 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT  
Sbjct: 7   FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++       +  + E  + +L + S+   G +R++             L +F   +P +
Sbjct: 67  GTRFVETAERMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLPQFAAQHPHL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+   + + +S   AD ++ L +P +  +    KL   H+  Y +  YL    +  S
Sbjct: 127 SLELVTIQQIMSLSRKEADLSVVLDEP-KGGAYFAEKLTDYHLQVYGSREYLAKAPDINS 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLGS 239
            ++L  H  +++       +E+  +   +D  +G+  PRI    Q +S  + +     G 
Sbjct: 186 REDLLSHPFVSY-------IEEMIFAPGLDY-LGDVHPRIKPQFQSSSIFAQLTATRNGL 237

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDW 297
           G+ +LP +     P LVR++ D I      +      LK   +++A  +F+   ++  D 
Sbjct: 238 GLCILPYFFASRYPELVRVLPDEIDLKRHYWITCHRDLKQAPRVRAVIDFLREAVRGEDA 297

Query: 298 KF 299
           +F
Sbjct: 298 RF 299


>gi|83719671|ref|YP_442520.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83653496|gb|ABC37559.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 327

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 134/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 33  QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 92

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LR++     G+  +   +  F   +PD+ + L
Sbjct: 93  LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPDVSVTL 152

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ +L
Sbjct: 153 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPETLDDL 211

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G+A   
Sbjct: 212 ARHNCLA---LAANANQQRGWTFVDDGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 268

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 269 WWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 316


>gi|218698798|ref|YP_002406427.1| putative transcriptional regulator, lysR family [Escherichia coli
           IAI39]
 gi|218368784|emb|CAR16530.1| putative transcriptional regulator, lysR family [Escherichia coli
           IAI39]
          Length = 324

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 32  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 91

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 92  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 151

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 152 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 211

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 212 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 269

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 270 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 302


>gi|110640569|ref|YP_668297.1| LysR family transcriptional regulator [Escherichia coli 536]
 gi|306813221|ref|ZP_07447414.1| putative transcriptional regulator, lysR family protein
           [Escherichia coli NC101]
 gi|110342161|gb|ABG68398.1| putative LysR-family transcriptional regulatory protein
           [Escherichia coli 536]
 gi|222032111|emb|CAP74850.1| hypothetical transcriptional regulator ycjZ [Escherichia coli LF82]
 gi|294490188|gb|ADE88944.1| transcriptional regulator, LysR family [Escherichia coli IHE3034]
 gi|305853984|gb|EFM54423.1| putative transcriptional regulator, lysR family protein
           [Escherichia coli NC101]
 gi|307628223|gb|ADN72527.1| putative transcriptional regulator, lysR family protein
           [Escherichia coli UM146]
 gi|312944888|gb|ADR25715.1| putative transcriptional regulator, lysR family protein
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|323953080|gb|EGB48948.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323958722|gb|EGB54423.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
 gi|324010236|gb|EGB79455.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
 gi|330910100|gb|EGH38610.1| transcriptional regulator, LysR family [Escherichia coli AA86]
          Length = 297

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V+   ++  L++++++   P+F  Y+ Y
Sbjct: 243 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 275


>gi|89902257|ref|YP_524728.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89346994|gb|ABD71197.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 325

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 138/296 (46%), Gaps = 19/296 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SFDW  +R F  V   GS   AA+ LH SQ ++ R I+ LE+++G+ LF R  RGL  T 
Sbjct: 34  SFDWSLVRSFLAVLDHGSLLGAAKVLHTSQPTLGRHIAELESQLGVVLFERTGRGLVPTA 93

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              KL      +    +     L  +  K +G +RI  +  +   +L   L +     PD
Sbjct: 94  TALKLADAARGMADGADRLARTLAGAQAKNTGTVRITASTPVAVQILPPILSQMRQALPD 153

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CR 178
           IQ++L+  N   ++    AD A+R+ +P Q  +L+ +K+  + + A+A   YL      R
Sbjct: 154 IQVELVASNTVSNLLRREADIAVRMVRPEQ-GTLVAKKIGDVKLGAFANRAYLARRSPIR 212

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR---ISCLQVNSYLSIMQYC 235
           +P+   +L  H LI   D     +  F       R +G P    +   + + ++   Q  
Sbjct: 213 QPM---DLLGHTLIG-SDTDTAILNGF-------RAMGFPASKDLFAFRTDDFIVQWQAV 261

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G GI  L  Y+ + + ++V+++ DV+  P   ++      ++ +  +++  +F+
Sbjct: 262 RAGLGIGFLASYMARTDADVVQVLPDVLRIPPLPMWLAVHREIRTSKLIRSVYDFL 317


>gi|296783892|gb|ADH43111.1| transcriptional regulator [Serratia marcescens]
          Length = 300

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 132/289 (45%), Gaps = 11/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VAR GSF+ AA +L +  SS+ R I  LE+ +G  LF R  RGL LT+ G  
Sbjct: 8   EHLPIFLDVARLGSFSAAARRLGMVPSSLVRHIDALESALGAALFVRSTRGLLLTDAGEL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +   +     EL   +  P G LRI+     G+  +   L      +P + + 
Sbjct: 68  LLTRAASLMADITGIHAELSALNETPQGTLRISCLPTFGKTYVLPLLPTLAERHPQLSVD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D + +  D A+R+ +  + S+L   ++        A+P Y+     P  ++ 
Sbjct: 128 LDLTERQTDPTQERLDAALRIGEQ-KDSALYASRIAAQRWVMCASPAYVARYGLPSDLEA 186

Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H LI  +    P C     W   +D  +       L+ + + +  Q  +LG GIA L
Sbjct: 187 LPQHRLIARYHKQQPAC-----WAQILDAALMSRCTMALRCDDFTAQRQAALLGLGIAFL 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+++V     N  LV+++ED       +Y   P A K + +L AF   +
Sbjct: 242 PNWVVGPDLQNGQLVQMLEDPRHEQQGIYLLRPMA-KVSARLAAFTALL 289


>gi|254560085|ref|YP_003067180.1| transcriptional regulator [Methylobacterium extorquens DM4]
 gi|254267363|emb|CAX23198.1| Putative transcriptional regulator [Methylobacterium extorquens
           DM4]
          Length = 309

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 1/188 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V R GSF  AA+ L  + S++SR ++ LE  +G+ L  R  R LTLT +G   
Sbjct: 18  EMEAFLQVVRRGSFAAAAKVLRQTPSAVSRAVARLEARLGVALLRRTTRSLTLTPEGEAY 77

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +++  +L+  +  L +++ +PSG+LR+  ++  G +++   L  FL  YP + + L
Sbjct: 78  RDRAADLVAELDAIERGLTQTAAEPSGRLRVNASVPYGTHVILPVLPRFLAAYPRMSLDL 137

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ID+    AD AIR+  P++ + L  R L    M   AAP YL     P    +L
Sbjct: 138 ALTDEVIDLPATQADVAIRI-GPLRDTRLRARSLGRSRMVVVAAPSYLAREGVPDHPDDL 196

Query: 187 DKHNLITF 194
            ++N + F
Sbjct: 197 ARYNCLNF 204


>gi|170695897|ref|ZP_02887037.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170139195|gb|EDT07383.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 312

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YP++ ++L
Sbjct: 66  LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQQRYPEVHVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ L   +  S L+ ++L +      A+P YL+    P +  +L
Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIVCASPAYLEKHGVPQTPSDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    ++        W  T D P GE  I    +  QVN   ++      G GI 
Sbjct: 186 ASHACL---QMVTPVFPPDKW--TFDGPNGEETIALGPATFQVNVAEAMAVAVTSGMGIG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L+P Y         +LVR++ D  +    +Y  YP            R ++  K R W
Sbjct: 241 LIPIYSAISGLRKGDLVRLLPDYTSQEMNLYALYPS-----------RQYLDAKIRTW 287


>gi|241205386|ref|YP_002976482.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859276|gb|ACS56943.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 310

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 129/274 (47%), Gaps = 15/274 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GSF    + + LS+S+  + +  LE  +G +L  R  R L LT++G   +  
Sbjct: 11  IFMAVVDAGSFIAGGQTMGLSRSAAGKAVIRLEDRLGARLLNRTTRTLNLTDEGRMFYER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   ++  +  +   +  P G LR+      G+ ++   L+++L  +PDIQ+++   
Sbjct: 71  GLQILALVDEAEASVAGQNSTPRGVLRLTVPDAFGRLVVLPLLEKYLQAWPDIQVEVSFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  DI  +  D AIR+      + L+ R + T      A+  YL    EP  I +L  H
Sbjct: 131 DRLADIVEEGFDLAIRIGATATDTRLVSRVIATYKARLCASSAYLAERGEPRDIDDLAVH 190

Query: 190 NLITFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           + + F     +       E  +W+   DR       S L+++S  +I    + G GIALL
Sbjct: 191 DCLIFAGRNQRQGWRFRGEGGSWIKAQDR-------SRLRLDSAEAIRDAALAGLGIALL 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           PD++V D+     L +I+ D+ T    +   YP+
Sbjct: 244 PDFLVADDLVTGRLRQILPDLETDDVKIVTLYPD 277


>gi|153827879|ref|ZP_01980546.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148876724|gb|EDL74859.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 301

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 ADHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVDFSLIYHKDKYKPVRLKRFIEF 290


>gi|330808689|ref|YP_004353151.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376797|gb|AEA68147.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 294

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 125/259 (48%), Gaps = 7/259 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA +L+ + ++++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRYFLELQRSGRLLTAARRLNTTHATVARHIEAIEKSLGSALFVQHAQGYELTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q ++ +SS  P GK+R+  T  LG   L   +      YP +
Sbjct: 62  GETLLKHAEAMENVALLAQEDITQSSA-PLGKIRLGVTEGLGIMFLASRMDGLFQRYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  L+ RKL    +  YA+  YL       S
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-AADLLVTRKLTDYSLALYASQAYLDRSPALRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  I + D +    E    L  ++     PR+      S ++  Q    G GIA
Sbjct: 180 REDLARHAWIGYVDDLLFSQE----LMFLNSFCRNPRV-VFHSTSVIAQQQAARSGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMED 261
           +LP Y+   +P LV ++ D
Sbjct: 235 VLPCYMASGDPTLVPLLPD 253


>gi|322835326|ref|YP_004215352.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170527|gb|ADW76225.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 301

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 147/297 (49%), Gaps = 21/297 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V  R  +FT AAE+L ++QS++S Q+  LE   G++LF R  + L+LT  G+ L 
Sbjct: 10  LRAFEVATRHTTFTSAAEELFITQSAVSHQLKKLEDSWGLQLFQR-GKTLSLTPAGAALA 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  E + KLETT  +L+E   K   +LR++TT       L   L E   L+P+I + L 
Sbjct: 69  PLVREFFSKLETTLADLREQ--KGRVRLRVSTTYSFALKWLLPRLPELARLHPEILVSLE 126

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             +K I+ +   +D AIR        + +  + + +L  +     A+P +L     P   
Sbjct: 127 STDKAINFASADSDVAIRFGHGNYAALHTEFMFREQLFPV-----ASPAFLAGFGIPAEP 181

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            EL +  L+T    DL+PK    F  +      + E   S    ++ ++I +  +LG GI
Sbjct: 182 AELLRFPLLTRDGADLVPKWDAWFKQVGVNTDVLHE---SVRFADTNMTI-EAALLGQGI 237

Query: 242 ALL-PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           AL    ++ K+  + +LVR+ + V       YF  PE ++    +  FRN++  +++
Sbjct: 238 ALARSGHVEKEIHDGSLVRLFDVVFPSPAAYYFVCPEGIETQPHILKFRNWLLAESQ 294


>gi|319409826|emb|CBY90134.1| HTH-type transcriptional regulator CrgA [Neisseria meningitidis WUE
           2594]
          Length = 299

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSESYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S +EL  H  + F +  P  +   N  A +D      +IS     S   I++  C+ G 
Sbjct: 180 QSTEELAGHQCLGFTE--PSSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++V ++       P L     D   P   VY  Y +   N  +L+ F +F+
Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289


>gi|315287780|gb|EFU47183.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
          Length = 315

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 23  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 82

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 83  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 142

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 143 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 202

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 203 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 260

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V+   ++  L++++++   P+F  Y+ Y
Sbjct: 261 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 293


>gi|300934903|ref|ZP_07149957.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300459809|gb|EFK23302.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
          Length = 315

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 23  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 82

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 83  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 142

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 143 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 202

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 203 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 260

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 261 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 293


>gi|194443789|ref|YP_002042153.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194402452|gb|ACF62674.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 303

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 143/294 (48%), Gaps = 19/294 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239
            E          + +P  +    W  T +      +   +   + V+S  S+M + + GS
Sbjct: 180 LESLAQAEWIIHERLPTPLR---WSVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGS 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ALLP ++V    +   L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 237 GVALLPQWLVNTALEEGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|15597056|ref|NP_250550.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107101292|ref|ZP_01365210.1| hypothetical protein PaerPA_01002326 [Pseudomonas aeruginosa PACS2]
 gi|218892184|ref|YP_002441051.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234954|ref|ZP_04928277.1| hypothetical protein PACG_00830 [Pseudomonas aeruginosa C3719]
 gi|9947848|gb|AAG05248.1|AE004612_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126166885|gb|EAZ52396.1| hypothetical protein PACG_00830 [Pseudomonas aeruginosa C3719]
 gi|218772410|emb|CAW28192.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 295

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 135/279 (48%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L+ F  V  SGS + AAEQ+ L+ S++SR +S LE ++G  L  R  R + LT
Sbjct: 1   MKANSDELQSFVSVVDSGSISAAAEQMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++  ++E  +  L      P+G+LRI        + +  ++ EF  LYP
Sbjct: 61  EEGRYFLDQARQILQQMEALEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ++L  ++  ID+     D AIR+   +  S+L  R L    +H  A+P YL     P
Sbjct: 121 DIQLELNTNDLIIDLLEQRTDVAIRI-GALSDSTLHARPLGASRLHILASPEYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            SI+ L  H L+ F    P+ +  +  + A  DR   +P IS    +S  ++ Q  +   
Sbjct: 180 ASIEGLRGHTLLGFTQ--PEHLNRWPVVHADGDRLEIQPDISA---SSGETLRQLALSHQ 234

Query: 240 GIALLPDYI----VKDN---PNLVRIMEDVITPSFTVYF 271
           GIA L  ++    ++D    P     M +   P   VY+
Sbjct: 235 GIACLASFMTDRDIQDGRLVPLFAEQMSEYRQPIHAVYY 273


>gi|330502079|ref|YP_004378948.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328916365|gb|AEB57196.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 318

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 19/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GSFT AA+ L LS + +SR I+ LE  +  +L  R  R L LTE G +  
Sbjct: 7   MRVFIQVVERGSFTAAAQALDLSTAQVSRLIADLEQHLQARLLQRTTRRLALTETGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++  +++    E + + + PSG+LR+ T   LG   L   +  +   Y  + ++L 
Sbjct: 67  ERSRQILGQIDEADAEARGAHLTPSGRLRVHTMTGLGLQHLTPLIARYAERYRQVVVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D+  D  D  +   + +  S L+ ++L  ++    AAP YL          +L 
Sbjct: 127 LAQRTPDLLEDGHDVTVAFARDLPDSQLVAQRLGPVYSVLCAAPSYLAKHGIAQRPSDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +   D + +   DF      D  +      C QVN   ++++    G G  LLP +
Sbjct: 187 QHRYLRLTDPLYRGQWDFG-----DEQLDVLPAECFQVNVAEALVKAAQAGMGFCLLPSF 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +         L+RI+      +  +Y  YP            R F+  K R W
Sbjct: 242 VASQPLREGRLLRILPQHRLRALNIYAMYPS-----------RRFLDAKTRTW 283


>gi|262164549|ref|ZP_06032287.1| transcriptional regulator [Vibrio mimicus VM223]
 gi|262026929|gb|EEY45596.1| transcriptional regulator [Vibrio mimicus VM223]
          Length = 300

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 137/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+    +++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENLEVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S I RKL  + M   A P YLK C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFIARKLTEVAMSTLATPAYLKQCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 AEHRCLT-GSVKRWSYQHNTTQQTIDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  ++      LV +  D   PS      Y +      +LK F  F
Sbjct: 245 FYCQEEIARGELVEVFPDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|163761415|ref|ZP_02168489.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
 gi|162281410|gb|EDQ31707.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
          Length = 305

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 130/285 (45%), Gaps = 32/285 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW++ R F V A  GS + AA  L ++Q ++ RQ++ LE E+G+ LF R  RGLTLT
Sbjct: 6   VNFDWNRARAFLVTAEEGSLSAAARALGMAQPTLGRQVAALERELGVALFERVGRGLTLT 65

Query: 61  EQGSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLR-IATTIDLGQNLLQGN----- 111
             G +L    R   E   ++          S+  SGK + I  T+ +  +          
Sbjct: 66  PSGLELMDHVRAMGEAAARM----------SLSASGKAQAIEGTVSISASETDAAFRLPP 115

Query: 112 -LKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
            +++     P I ++++  N + D+    AD AIR  +P Q  +L+ RK+  I    YA 
Sbjct: 116 IIRKLRETAPGIDVEIVATNTESDLRRREADIAIRNYRPTQ-PNLVARKIRDIEGRIYAT 174

Query: 171 PHYLKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227
           P YL++   P + ++      I F   G+LI   M  F    T      +   S +   S
Sbjct: 175 PFYLESIGNPSAPEDFAAAEFIGFNRSGELI-AAMARFGLTLT------QKNFSLIS-ES 226

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC 272
           +L    +   G GI ++   I    P +VR++  V    F V+  
Sbjct: 227 HLVQWSHVKQGLGIGVMAADIGDAEPGVVRVLPGVDPLVFPVWLV 271


>gi|329903518|ref|ZP_08273531.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480]
 gi|327548301|gb|EGF32992.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480]
          Length = 304

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 141/294 (47%), Gaps = 14/294 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   AR+GSFT AA++L +++S++ + I+ LE  + IKLF+R  R +TLT  G+     
Sbjct: 12  IFVAAARAGSFTAAADRLGITKSAVGKSIARLEQRLAIKLFHRTTRKITLTVDGAAYFAS 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +     +   ++ LQ     PSG+LRI      G+ ++   L E    YP++ + L   
Sbjct: 72  CATALDGIADAELALQNGHQVPSGRLRIDMPAAFGRGVILPILAELTQTYPELTLTLTFT 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPLSIQELDK 188
           +  ID   +  D  IR  +  ++  L+ + L    +   A+P YL +    P SI +L++
Sbjct: 132 DNLIDPIEEGIDLLIRFGEIKETGGLVAKLLSRERLRICASPAYLARKGGAPASIADLEQ 191

Query: 189 HN-LITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           H  ++ +    P       W  TVD    E R    S  +V    +++   + G GI  L
Sbjct: 192 HACIVGYRRNTP-----MPW-RTVDTDGKEVRFAPPSTYEVGDGDAVLAMTLAGCGICQL 245

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P ++V++   +  LV +++ V T    +Y  +P+      KL+   + + +K +
Sbjct: 246 PSFLVRESLRSGALVSMLDAVSTCESGIYAVWPQTRHLLPKLRKVIDVLEMKGK 299


>gi|238028961|ref|YP_002913192.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878155|gb|ACR30488.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 324

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 141/323 (43%), Gaps = 36/323 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F   A SGSF+ AA ++ +  S++SR ++ LE ++GI LF R  RGL LTE G    
Sbjct: 7   IRAFLCAAESGSFSKAAHRIAVKTSTVSRYVADLERDLGIALFNRSTRGLVLTEGGRLFR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   L+  +      +  P G LR+      G   +  +L E    YP I +  +
Sbjct: 67  EHALVVMSALDEARDATSSLNASPRGLLRVTMPRAFGLRHVIPHLPELAERYPGIDVDAV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +++     D AIR+   +  S LI R+L T    A A+P Y++    P + + L 
Sbjct: 127 MTDTTLNLIDAGIDLAIRI-GALPDSQLIARRLATHRRVACASPAYVERHGMPATPEALA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP--------------------RISC-LQVN 226
            H  + F    P   +D  W       +G+                     R+S  L+V+
Sbjct: 186 GHATLRF----PLVSDDRWWFIRRQARVGQAPQETGDAGDSAPGKARDVAVRLSGRLRVD 241

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEALKN 279
              ++ Q  + G GIALLP + +     + +L+ ++ D        +  ++  YP     
Sbjct: 242 DAEALRQLAIAGCGIALLPTWAIGSALRDGSLLHLLPDWDAQATRAASAIWAVYPPKKTV 301

Query: 280 TGKLKAFRNF---IFLKARDWKF 299
           + K++AF +F   +F +   W F
Sbjct: 302 SSKVRAFIDFQAEVFARPGYWDF 324


>gi|224826641|ref|ZP_03699742.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224601242|gb|EEG07424.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 306

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 130/290 (44%), Gaps = 12/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V   GS   A E+L LS + ISR++  LE  +G++L  R  R   LT +G   +
Sbjct: 7   LHIFCAVVEQGSLVKAGERLRLSSAVISRRLINLEARLGVRLLQRTTRRQALTPEGELYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V  +L  T+  L     +PSG L++  +   G+  L  +L  FL  YP +++ L+
Sbjct: 67  QRGRAVLDELAETEALLMARQHQPSGVLKVTASASFGRQHLAPHLPAFLERYPQLEVHLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+     D AIR+ +P     L+ R L        AAP YL    EP    EL 
Sbjct: 127 LTDAVLDLVDGGLDLAIRIGQP-DKPGLVARPLCVNRRILCAAPGYLDRQGEPRHPAELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
           +HN +   ++  +      W  ++D P G   +     L  N   ++ + C+ G GIA+ 
Sbjct: 186 RHNCLLLDEVGTRSQ---VW--SLDGPQGPTEVEVRGNLVSNLGDAVGEACLAGGGIAIR 240

Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             + V D     R   ++     P+  V   YP     + K++   +F+ 
Sbjct: 241 STWAVSDALRAGRVRQVLPGYALPAQEVLAIYPSRRHLSPKVRVLIDFLL 290


>gi|83748638|ref|ZP_00945656.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207727553|ref|YP_002255947.1| hypothetical protein RSMK03874 [Ralstonia solanacearum MolK2]
 gi|207741944|ref|YP_002258336.1| transcription regulator protein [Ralstonia solanacearum IPO1609]
 gi|83724682|gb|EAP71842.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206590790|emb|CAQ56402.1| hypothetical protein RSMK03874 [Ralstonia solanacearum MolK2]
 gi|206593330|emb|CAQ60257.1| transcription regulator protein [Ralstonia solanacearum IPO1609]
          Length = 312

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+ G    
Sbjct: 7   MRVFAKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   ++  +      S    G LRI   +  G ++L   L  F  LYP++   + 
Sbjct: 67  QRCQQVLLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDVA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P   +++ 
Sbjct: 127 LSDRPIDIVEDGRDIGIMVSELGLGSHLVARRMISAEMIMAATPAYLRQHTTPQRAEDIA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246
            H +I      P+   ++   A   + I  P    L V S   +M   VL   GIA+L  
Sbjct: 187 DHRVIAMWH--PQLRHEWEMSAPDGQSIAVPVQPSL-VTSNAELMHRAVLADMGIAILSS 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A + K
Sbjct: 244 YMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEVK 298


>gi|167622444|ref|YP_001672738.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352466|gb|ABZ75079.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 315

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 136/294 (46%), Gaps = 13/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +++++F  V   GSFT AA  L L+++++SR+++ LE + G++L +R  R L LTE G
Sbjct: 3   DLNRIQMFAQVVEQGSFTRAANALGLTKATVSRKVAELEADAGVQLLHRTTRALKLTEAG 62

Query: 64  SK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           +   HRV + +   L+  + +L        G L+I   I++GQ        +FL LYPDI
Sbjct: 63  ADYFHRV-NRILTDLKNAEDQLSARQQTIKGHLKIVCPIEMGQLYFGRVFAQFLALYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++        L    L+       A+P YL    EP +
Sbjct: 122 TIEAELTNRQVDVIAEGVDLLFQITAET-DDRLKSYALINTPKILMASPEYLDKFGEPTT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++L +H  I     I     D NW     +     EP  S L+ N+   + +  + G G
Sbjct: 181 PEQLQEHQCIR----ISSPHIDGNWTLFNGKEWVTIEPE-SRLETNNITLMREAALEGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           IA +P  I  D      LV ++ D       V    P+ +    + + F  F++
Sbjct: 236 IAAIPLVIANDALEKGKLVTVLNDFPMKQSLVTMSMPQRVYLPRRYRVFIEFLY 289


>gi|319781638|ref|YP_004141114.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167526|gb|ADV11064.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 299

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 141/287 (49%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G  L  R  R  ++TE G   
Sbjct: 6   RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R  SE+  ++++    ++ESS    G+++++         +  +L +F   +PDI + +
Sbjct: 66  YRRASEIVREVDSLADAVRESSGDVRGRIKLSAPRTFADAPIGQSLIDFAKQHPDIVLDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D A+R+ + +++SSLI R+L    +   A+P  +     P   Q+L
Sbjct: 126 QLDDRFVDLVEEGFDLAVRISR-LENSSLIARRLAPFSIKLCASPELIAKHGTPTRPQDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +   I   D   + + ++ +      P+       ++VNS ++     V G G  +LPD
Sbjct: 185 SRMPCIV--DTNGRGLNNWPFKGDNGDPVSVSVSGPIEVNSPMTARAAAVSGLGFTVLPD 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +I   +     LV +++D I     ++  YP       K++ F +F+
Sbjct: 243 FIAAPDLASGRLVSVIDDRILSGGGIFAVYPHRRYLPAKVRVFVDFL 289


>gi|304397977|ref|ZP_07379853.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304354688|gb|EFM19059.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 299

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 128/270 (47%), Gaps = 5/270 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GSFT AAE L + + S+SRQI  LE ++  +L +R  R + LT+ G   +
Sbjct: 7   MQVFVRVAEMGSFTRAAESLGVPKGSVSRQIQALENQMATRLLHRTTRRVQLTQDGLVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++      Q      SGKLR+  ++ +    +   L EFL  YP I+I+L 
Sbjct: 67  DRCLDLLSMIDDMDSLFQHEPASLSGKLRVDMSVAMATGFILPRLPEFLQHYPGIEIELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+ + ++ S LI RK+ T  +   A+P YL     P+ ++EL 
Sbjct: 127 SSDRQVDVIREGFDCVLRVGE-LKDSGLIARKIGTHTLINCASPGYLSRFGMPIRLEELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H ++ +   + +    F +               + VNS  +    C+ G GI  +P  
Sbjct: 186 QHAMVHYSQQLGQASPGFEYFDGRQCHYVHTG-GVVTVNSTETYRAACLAGLGIIQVPAA 244

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            ++   +   LV ++         ++  YP
Sbjct: 245 GIQTLLERGELVEVLHRFPARPMPIHLLYP 274


>gi|187918816|ref|YP_001887847.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717254|gb|ACD18477.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 344

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 13/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V ++GSFT A +QL +++S++ + I+ LE  + ++L +R    L LT+ GS 
Sbjct: 46  NDIATFVTVVKAGSFTSAGQQLGITRSAVGKIIARLEARLQVRLLHRTPHSLGLTDDGSV 105

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   +++   LE T+  +   S  P+G LRI+  I LG   +   +  FL  +P +  +
Sbjct: 106 FYGRCTQILEDLEETETAMAVRSATPAGSLRISLPIALGHRQVLPIIALFLERWPAVSAE 165

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D AIR+ +P   S LI R + T  +   A+P YL     P+S  +
Sbjct: 166 VSFTDRFVDLVDEGIDVAIRVGEPKPDSRLIARTVATQKLITCASPVYLAKRGAPVSPLD 225

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L  H  + F            WL      +G+  +     L+++S  +++   V G GI 
Sbjct: 226 LAHHECLQF----VSAGRPQPWLFA---GVGQQAVEAGGRLKMDSAEALIGAAVNGVGII 278

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            LP+Y+V +     +L  +++     +  +   YP     T K++ F
Sbjct: 279 NLPNYLVANEIRQGHLQPLLQSFAAQALPIRAIYPTRRHLTPKVRLF 325


>gi|70729843|ref|YP_259582.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344142|gb|AAY91748.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 298

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F V      F  AA  + + +S +S+QI  LE  +G++L  R  R L LTE G++ +
Sbjct: 7   MRAFVVTVDENGFAAAARAMDVPRSKVSKQIQALEEAIGVQLLQRTTRSLRLTEAGAEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV   ++  +   ++   +  G LR+   +  G   L   +  F   +P I++QL+
Sbjct: 67  ESVREVLATVDEAEQRARDGIAELRGVLRVNAPMSFGLRRLGPLVPLFHEQHPLIELQLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D      D  +R+   +  SS++ R+L        A+P YL     P   ++L 
Sbjct: 127 LSDQQVDPLRGGFDVTLRIAS-LPDSSMVARQLAPAPRIMVASPTYLARAGIPRQPKDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +G L        +  + V R  +  P    L  N+   + Q    G GIALLPD
Sbjct: 186 SHQCLNYGYLQSGVSLQLSNGSDVQRVHVTGP----LHANNGDLLAQAAEAGMGIALLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +IV+D      LV ++ +   P  ++   YP A +   K +AF +F+
Sbjct: 242 FIVEDALAAGRLVPVLCEWQAPPISINVVYPSARRVPQKTRAFIDFL 288


>gi|83951032|ref|ZP_00959765.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
 gi|83838931|gb|EAP78227.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
          Length = 299

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 133/287 (46%), Gaps = 9/287 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+  +   ++A +G+ + AA++   S  ++ R+I+ +E ++G++LF R   G  LT  
Sbjct: 5   LDWNDYQTVLLIAEAGTLSGAAQRSGTSHPTMFRRINAVEQKLGVRLFERFRTGYRLTSA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++     E+      T+  +    ++PSG + +ATT  L   LL   +     + PDI
Sbjct: 65  GEEVATTAREIEELTNATERRVAGRDLRPSGIVHLATTDSLLWGLLAPEIAHLRHVEPDI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + + + N+  D+S   AD AIR     +   LI R+L  I    YAA          L 
Sbjct: 125 VLDVTVSNEISDLSFREADIAIRPASAPE-DHLIGRRLGRIRQAVYAA--------RSLD 175

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + E D+ N      + P     +  L    R  G       + +S LS++     G+G+A
Sbjct: 176 LSEGDQSNWAGLPWIGPNASMSYPQLHAWMRASGVEARCVAKTDSVLSMLAAVRAGTGVA 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +LP Y+   +P+L R+  ++      ++      L++T +++A  +F
Sbjct: 236 ILPCYLADPDPDLRRLGPEIEDLGVDLWMLTHPDLRHTARVRAVLDF 282


>gi|149191418|ref|ZP_01869669.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148834767|gb|EDL51753.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 299

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 129/273 (47%), Gaps = 8/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V  +G+F+  AEQ +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVVETGAFSRVAEQNNLTNSVVSKRIARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  LVHGAKNVKQATQEAMESVSGYGENISGHIKMSVPSISGDLILADAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVDGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNSKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L +HN + +        E   W    ++     R+S     ++  ++ +  + G GIA +
Sbjct: 183 LTQHNCLQYAYQTTGASE---WEFKANKGNYIVRVSGSFSTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           P  +V     N  LV I  D +     +Y  YP
Sbjct: 240 PRCLVYHDIRNGQLVDIFPDQVGKRLGIYAVYP 272


>gi|87122262|ref|ZP_01078144.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86162405|gb|EAQ63688.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 292

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 137/290 (47%), Gaps = 10/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  V   G FT A E L+  +S+ISR ++ LE  +G+ L  R  R  TLTE G  
Sbjct: 4   NDMLVFAEVVAKGGFTAAGESLNKPKSNISRTVTRLEESLGVILLQRTTRKHTLTEVGQI 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  +LE+    L+  +  P G LR++ ++ +GQNL+   L  F+  YP++++ 
Sbjct: 64  YYQHCLRIKEELESANHSLETLNQVPRGLLRVSASVSVGQNLIAPLLTGFMQAYPEVKLD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQ 184
           L L N+ +D   +  D  IR+ + +  S+L+   L    ++ YAAP Y  N   P S + 
Sbjct: 124 LRLINRRVDAIEENFDILIRVGE-LADSNLVASPLCDRRLNYYAAPTYFVNRARPCSDLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L   NL+    L       F    T       P     + + +  I Q  + G GI LL
Sbjct: 183 NLSDFNLLHMKSLNAPAQWHFESDNTQKVIHFNP---SFESDDFSVIRQMLLDGYGIGLL 239

Query: 245 PDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY+    VK+   L  ++     P   ++   P     T K++AF ++I
Sbjct: 240 PDYMADAYVKEG-RLEPVLNAWQGPKVALHSLVPSRRGITPKVRAFLDYI 288


>gi|172060359|ref|YP_001808011.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171992876|gb|ACB63795.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 307

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AAE L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAKAAELLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAELIESEACAQALEPHGLVRVNAPMSFGLRHLSPLLPAFLERYPRVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     A+P YL     P   
Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLDRHGRPTHP 184

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++++H  +T+ +L  P+     N  +  D  +G      ++ N+   I    + G G+A
Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRNPASGED--VGVSVHGRIRTNNADVIAPALLAGHGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L P+++  D   +  L  +M +       V    P  L    ++    +F+
Sbjct: 243 LQPEFLAWDALQSGELEEVMPEWKIADVNVNLVTPPGLLRAARVTVLLDFL 293


>gi|163793890|ref|ZP_02187864.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
 gi|159181001|gb|EDP65518.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
          Length = 312

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 138/290 (47%), Gaps = 15/290 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +LH++Q++IS QI  LE  +G+ LF R  R L LT+ G  
Sbjct: 8   NSLRAFEAAARHLSFTKAAGELHVTQAAISHQIKSLEEWLGMVLFKRQNRALLLTDAGQA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E + ++     +L+E     SG L ++T        L   L  F   +PDI+++
Sbjct: 68  YLPPLREAFDRIHDATAKLRERD--KSGALTVSTFTSFAAKWLVPKLGRFASGHPDIEVR 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +++  +D   D  D  IR  +      L   +L+T  +    +P  L         +E
Sbjct: 126 LAINDVLVDFGSDAVDVGIRYGRG-DWRGLRTERLMTEVVFVVCSPRLLDGPAPLTCPEE 184

Query: 186 LDKHNLITFGDLIPKCMEDFN-WL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L  H ++   D +P   ED++ WL A    PI   R   L  N    ++Q  + G G+AL
Sbjct: 185 LRYHTMLH--DDLP---EDWDTWLEAAGAGPIKARR--DLAFNHSEMVLQAAIDGLGVAL 237

Query: 244 LPDYIVKDNPNLVRIME--DVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290
               +V D+    R+++  D+  P+   Y+  YPE  +   K+KAFR+++
Sbjct: 238 GRSVLVADDLAAGRLVKPFDLELPTQAAYYLVYPEGTQERPKVKAFRDWV 287


>gi|170735503|ref|YP_001774617.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821541|gb|ACA96122.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 305

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 137/290 (47%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   +
Sbjct: 7   MRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  +++  +  + ++   P G+L++     + + ++   L  FL  +PDI ++L 
Sbjct: 67  ERSVAVLREIDDMEASVSQARNVPRGRLKVNLPPAMAKQVVVPALPAFLDAHPDIMLELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S +I +++ ++      +P Y   C EP ++ +L 
Sbjct: 127 VTDRQIDLVGEGVDCVVRI-GALDDSGMIAKRIGSLTTCTCGSPAYFARCGEPQTVDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  +    +         W   VD   GEPRI      + VN   + ++  V G G+  
Sbjct: 186 QH--VAVSHISADTGRPRPWDYVVD---GEPRIVQMCGTVAVNDADNYIECGVAGIGLIK 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              Y+V+    +  L  ++ D   P+  +   YP       KLK F +++
Sbjct: 241 TSLYLVEPYLKSGRLREVLTDFNAPARPISVLYPPNRHIPVKLKVFVDWL 290


>gi|134284333|ref|ZP_01771016.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|226943764|ref|YP_002798837.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|134244310|gb|EBA44425.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|226718691|gb|ACO77862.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 291

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 119/255 (46%), Gaps = 10/255 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V ++  F  AA+ L +  S++SR+IS LE  +G++L +R  R + LTE G    
Sbjct: 8   MALFVEVVKAKGFRSAADALGMPNSTLSRRISELEKSIGLRLLHRTTRKIELTEAGQIYF 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +       L E   +PSG LR +  +D     L   + EF  LYP I     
Sbjct: 68  ERCKRIVDEARLAHEHLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFASLYPGIIFDFD 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +D+  +  D AIR+ +  ++S LI R L T+  + YA+P YL+   EP    EL+
Sbjct: 128 LTPRRVDLVSEPFDVAIRMGES-ENSQLIARTLATLTPYLYASPGYLERSGEPSKPAELE 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H            + D    ATV   +G        +NS   + +   L  GI LLP+ 
Sbjct: 187 RHECFNILRAGTWTLHDDKKTATVS--VG----GRFSLNSVGMLRRLATLDMGIILLPEE 240

Query: 248 IVKD---NPNLVRIM 259
           IV D   +  L RIM
Sbjct: 241 IVADELVSGKLRRIM 255


>gi|315182214|gb|ADT89127.1| transcriptional regulator [Vibrio furnissii NCTC 11218]
          Length = 304

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LTE G    
Sbjct: 10  IRSFVLIAQLGNFTKAAEALDVSRSHVSRQISQLEQQMGVTLLIRTTRSLKLTEAGKTFF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                  H ++   +   + +    G++RI +    LG+ ++   + +F+  YP +++ L
Sbjct: 70  AQCEAALHSIDQAVLAAVDDTEAVRGQIRINSVGGYLGEEIVADLITQFMARYPHVRVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  D  D A R+ K ++ S  + RKL+ + M  YA+P YL     P   +EL
Sbjct: 130 DLSSHRVDLIEDEFDVAFRMGK-LEDSGFVSRKLMDVEMGTYASPSYLDRHGHPTHPKEL 188

Query: 187 DKHNLIT 193
           + H  +T
Sbjct: 189 EHHQCLT 195


>gi|260769792|ref|ZP_05878725.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260615130|gb|EEX40316.1| transcriptional regulator [Vibrio furnissii CIP 102972]
          Length = 304

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LTE G    
Sbjct: 10  IRSFVLIAQLGNFTKAAEALDVSRSHVSRQISQLEQQMGVTLLIRTTRSLKLTEAGKTFF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                  H ++   +   + +    G++RI +    LG+ ++   + +F+  YP +++ L
Sbjct: 70  AQCEAALHSIDQAVLAAVDDTEAVRGQIRINSVGGYLGEEIVADLITQFMARYPHVRVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  D  D A R+ K ++ S  + RKL+ + M  YA+P YL     P   +EL
Sbjct: 130 DLSSHRVDLIEDEFDVAFRMGK-LEDSGFVSRKLMDVEMGTYASPSYLDRHGHPTHPKEL 188

Query: 187 DKHNLIT 193
           + H  +T
Sbjct: 189 EHHQCLT 195


>gi|300313746|ref|YP_003777838.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076531|gb|ADJ65930.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 299

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 4/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT AA+ L +  +++S+ +  LE  +G++L  R  R +++T +G   +
Sbjct: 7   IRAFARVVEAGNFTRAADSLDMPNATLSKLVRELEAHLGVRLLQRTTRRVSVTPEGLDYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +   LE        +   P GKLRI       +++L   L +FL  YPDI I L 
Sbjct: 67  EKTGRLVRDLEDIDTSFNAARGNPRGKLRIDVGGSTARDVLIPALPDFLARYPDISIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           + ++ +D+  D  DC IR   P+ +SSL+ R++    M   A P YLK    P    EL 
Sbjct: 127 VSDRPVDLIGDSVDCVIR-GGPLDNSSLVARQIGQARMVTCATPAYLKQFGVPAYPDELK 185

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
           + H LI++  L P+    F +
Sbjct: 186 NGHRLISY--LSPQSGRAFPF 204


>gi|238763939|ref|ZP_04624896.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238697907|gb|EEP90667.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
          Length = 291

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 121/256 (47%), Gaps = 6/256 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  VAR GS   AA +L + Q+++ R+I+ LE  +G KLF R  +  TL+  
Sbjct: 1   MNWDDARFFLAVARKGSLRQAAHELQVDQATVGRRITTLEQVLGAKLFIRTPKAFTLSPL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      + +  ++   +   S  +  G + +A T  + +  +   LK+    YP+I
Sbjct: 61  GEQVLAEVMVMENAAQSIGRKAANSDSRLQGMVSLAATDTIAEAFVLPALKQLHQHYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++++      DI+ +  D AIR  +P   + L+ ++L TI M  YA+  YL  C EP  
Sbjct: 121 TLRVLTGIDISDIAYNSVDLAIRGVRP-DDNELVIKRLATIEMGLYASRDYLARCGEPQR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +    H L+ F    P+     +W       +  P +  L+ NS   +      G GI 
Sbjct: 180 GEHFRGHELLLF----PRQSVPRHWQDLCGETLENPHV-VLESNSQQLLRAAARKGVGIG 234

Query: 243 LLPDYIVKDNPNLVRI 258
           LL  ++  ++  LVRI
Sbjct: 235 LLSCFLANNDDELVRI 250


>gi|255589997|ref|XP_002535152.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
 gi|223523923|gb|EEF27233.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
          Length = 311

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 144/297 (48%), Gaps = 22/297 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA   SF+ AA +L ++ S+IS+ I  LE  VG+ LF R+ RG++LTE G +
Sbjct: 7   DGVTTFVAVAEEKSFSAAAVRLGVTPSAISQTIRNLERRVGLALFNRNTRGVSLTEGGEQ 66

Query: 66  -LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              RV   V   +  T+ EL   S KP G LRI         +LQ  L+ FL  YPDI++
Sbjct: 67  YFERVVPAVRELVAATE-ELGADSDKPMGLLRINVARAGQMVVLQPILRGFLDRYPDIRL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHYLKNCR 178
            L ++N  IDI     D  IR        +L++R +V I +         A+P YL+   
Sbjct: 126 DLSVENTLIDIVGRGFDAGIRF------GNLVERDMVAIKVGPSISAWILASPDYLRRFG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           EP   +EL +H  + F       +E +++    D  I       L VN   +++Q  + G
Sbjct: 180 EPRHPRELIEHECVCFRLQSSGQIERWSFQKD-DETIELAVNGRLIVNDSATLVQAGLDG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  + +  V+   +   LVR++ D     P FT+Y  Y +  +   KL+A  +++
Sbjct: 239 IGIVYMINGYVERLVERGRLVRLLTDWSPTLPGFTLY--YADRRRVPAKLRALIDYL 293


>gi|254525103|ref|ZP_05137158.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219722694|gb|EED41219.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 301

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 131/289 (45%), Gaps = 5/289 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+ R+F  V    SFT AA+QL L +S++S  I+ LE  +G +L  R  R ++ T  G  
Sbjct: 5   DRFRIFTRVVECASFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVSTTHDGDV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H     +  ++E  +   ++   +P G L+I     +G+ +L   L +F   YP +++ 
Sbjct: 65  FHARCLRLIAEVEDAESLFRQDDAQPVGLLKIDVPSRIGRRILAPALPDFFARYPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  D  D  +R+ + +  SSL+ R L  +     AAP YL+    P    +
Sbjct: 125 LGMTDRAVNLIEDGCDAVLRVGQ-LSDSSLVARTLGQLDFVNVAAPAYLREHGAPQHPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + +       +E + W       +  P    ++VNS  + +  CV G G+  +P
Sbjct: 184 LQQHRAVNYASPTTARVEAWEWQDGSQLRM-LPMPGWVRVNSAEASIACCVAGLGLLQIP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            Y V+    +  LV ++   +     V    P       + + F  ++ 
Sbjct: 243 RYDVQAELQSGALVEVLPQHVAQPLPVTLLQPHRQHRAQRTQVFIEWLL 291


>gi|121601186|ref|YP_992570.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|121229996|gb|ABM52514.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
          Length = 327

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 33  DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 92

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E  +   + S V PSG LR+     +G+ ++   L EFL  YP I ++
Sbjct: 93  LYERCLRLIADVEEAENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 152

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 153 LGVTDRAVNLIEERVDCVLRVGT-LSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 211

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H  + +       +  + W+    V R     R++   VNS  + +  C+ G G+  
Sbjct: 212 LERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGLIQ 268

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ D       +   YP     + + + F  ++
Sbjct: 269 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 318


>gi|330985973|gb|EGH84076.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 301

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 11/255 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+
Sbjct: 4   FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    EV   +  ++   +++   PSG LRI   +  G  +L   L  F L +P++++
Sbjct: 64  AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFPEVKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L N+ +D+  +  D AIRL    QSS LI R +    +   AAP YL     P   +
Sbjct: 124 DLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARPMQDYTLTICAAPSYLARHGTPAHPE 183

Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           +L  HN + F    P   E       W  T   P GE  +     +  N+   + Q    
Sbjct: 184 DLGAHNCLAFS--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAACA 239

Query: 238 GSGIALLPDYIVKDN 252
           G G+ +LPD +V+ +
Sbjct: 240 GMGVVMLPDALVQRD 254


>gi|260778230|ref|ZP_05887123.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606243|gb|EEX32528.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 294

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 11/243 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  VA S  F+ AA+QL  S S +SRQ+S LE+ VG+ L  R  R ++LT+ G 
Sbjct: 4   FEGINEFVAVAESQGFSSAAKQLGCSTSHVSRQVSRLESRVGVALLARTTRMVSLTDAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   E+ + L+    +L    ++ SG LR++      +N +   L  F   YP++ +
Sbjct: 64  IYYRQCKELVNGLQHANEQLSSQHIQLSGTLRVSAAGAFAENYVAPALMAFAKKYPNLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L  + + ++   D  D AIR  + +  S L+ RKL    M A A+  YL+   +P   +
Sbjct: 124 ELDFNTRMVNFIEDGIDFAIRYGR-LNDSGLVARKLADRPMAAVASRDYLEQFGQPTHPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +L +H+ I           + +WL   + +P+   R+    + N+  ++++ C  G GIA
Sbjct: 183 QLKQHSCI--------IANNDHWLFEHEGKPLNAVRVHGRWRSNNSTAVIEACEQGLGIA 234

Query: 243 LLP 245
            LP
Sbjct: 235 YLP 237


>gi|257488029|ref|ZP_05642070.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330891090|gb|EGH23751.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|331008699|gb|EGH88755.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 301

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 11/255 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+
Sbjct: 4   FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    EV   +  ++   +++   PSG LRI   +  G  +L   L  F L +P++++
Sbjct: 64  AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFPEVKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L N+ +D+  +  D AIRL    QSS LI R +    +   AAP YL     P   +
Sbjct: 124 DLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARPMQDYTLTICAAPSYLARHGTPAHPE 183

Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           +L  HN + F    P   E       W  T   P GE  +     +  N+   + Q    
Sbjct: 184 DLGAHNCLAFS--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAACA 239

Query: 238 GSGIALLPDYIVKDN 252
           G G+ +LPD +V+ +
Sbjct: 240 GMGVVMLPDALVQRD 254


>gi|154244831|ref|YP_001415789.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158916|gb|ABS66132.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 316

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 141/289 (48%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ L+ F  V R+G  T AA+ + +  S++SR+I+GLE  +  +LF R   G   T  
Sbjct: 18  LDWNDLQAFLAVVRAGRLTAAAQAMRVDHSTLSRRITGLEAALKTRLFERRPAGYVPTAA 77

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      V   +   + +L +  +  +G +RI T    G   L   +  F   + ++
Sbjct: 78  GERLVAEAEAVESIVIGMRAKLTDQVLGLAGSVRIGTPEGFGTYFLTPQMIHFCARHREL 137

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L+ + + + +S   AD  I + +P +   L   +L    M  YA+ HYL       S
Sbjct: 138 QVELVANPRTVSLSKREADIGIMMARP-EEGRLHATRLTDYEMGLYASRHYLAQHAPIAS 196

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++ +H  I +  DL+P       ++A +D+ +  P+   +++++ ++ +     G G+
Sbjct: 197 RADIRQHAFIGYIDDLLPTAAH--GYVAELDKAL-NPQ---MRMSNIITQLVAATNGGGL 250

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP ++   + +LVR++ + I  + + +      ++   +++A  +FI
Sbjct: 251 CMLPCFMAGTSADLVRLLPEEIAITRSYWLVIHSDVRELARVRAVIDFI 299


>gi|86137120|ref|ZP_01055698.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85826444|gb|EAQ46641.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 299

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 136/283 (48%), Gaps = 10/283 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++ F  VA  GS + AA QL  SQ ++ R I  LE ++  +LF RH RGL L++ G
Sbjct: 8   DWSLIQSFLAVADCGSLSAAARQLSRSQPTLGRHIQSLEADLNQRLFERHPRGLQLSQAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L  +  E+  ++    ++    S + +G +RI  ++    +LL   L +     P I+
Sbjct: 68  TALLPMAREMQAQMYRLSLQAAGQSEELAGTVRITASVFAAHHLLPPILADIRREEPGIE 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+  ++  ++    AD A+R+ +P Q   +I + +  + +  +AA  YL     P + 
Sbjct: 128 LELVPTDESENLLFRAADIALRMYRPTQ-LDVITQHIADLPLGIFAAKSYLARRGRPSTS 186

Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +EL +H+L+ +   DLI   M    W   VDR     R  C    +Y  +++    G GI
Sbjct: 187 EELWQHDLVGYDNNDLILNTMRQMGW--QVDRSAFAMR--CDNQTTYWQLVRA---GCGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
                 + + +  +  +   V  P+  ++     A++ T +++
Sbjct: 240 GFCQSGVARADDCVAELDLGVEIPALPIWLTAHSAMRETPRIR 282


>gi|206580873|ref|YP_002238143.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569931|gb|ACI11707.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 305

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 5/246 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT +G+  
Sbjct: 6   SLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++  + EL  S  +P+GKLRI+  + +G  LL   L  F  LYP +++ L
Sbjct: 66  LTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFTRLYPQVELDL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +++  +  D AIR  + +  S LI RKL        A+P YL     P S +EL
Sbjct: 125 DFSDRLVNLIDEGVDVAIRSGE-LADSRLIARKLGGFRFVLCASPAYLAEYGPPDSPKEL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALLP 245
             H  I F    P       W     R  G+ R  S + VN+  + ++    G GIA +P
Sbjct: 184 AAHKCIFF--RFPSTGLIQPWELRDMRLTGDFRAASVVTVNNIEAAIRLSAAGMGIAYVP 241

Query: 246 DYIVKD 251
           D++V++
Sbjct: 242 DFVVRE 247


>gi|157371302|ref|YP_001479291.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323066|gb|ABV42163.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 300

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LRVF  VA  GSF  A++ L + ++++S  I  LE E+G +LF+R  R + LT  G  L
Sbjct: 6   RLRVFIQVAEVGSFIRASQILLMPKTTVSAAIQQLEHEMGTRLFHRTTRRVQLTSDGELL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   ++  +      +    G+L +     + + ++   L +F L YP+IQ+ L
Sbjct: 66  LEKARSLLFDVQALESLFHRQNGPIGGRLTVDVPSRIARRMIVPALPDFFLQYPEIQLFL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R+   +  SSL+ + L  + M   A+P YL+    P    +L
Sbjct: 126 SASDRSVDLIQEGIDCVVRVGN-LSDSSLVSQPLGRLSMINCASPDYLQRYGTPEHPDQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + H ++ +        + + W       ++ +   R++   V +Y+     C++G G+  
Sbjct: 185 EDHWVVGYAQPTLAGADSWQWQQDGQHFEKTLPN-RVTVNNVENYIGC---CLVGLGMMQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +P + V+   DN +L  I+     P+ ++   YP   + + +L AF  +
Sbjct: 241 IPRFDVQHYLDNGSLCEILPQARPPAMSMALLYPHRRQRSARLTAFSEW 289


>gi|91209364|ref|YP_539350.1| transcriptional regulator YcjZ [Escherichia coli UTI89]
 gi|117622574|ref|YP_851487.1| putative transcriptional regulator [Escherichia coli APEC O1]
 gi|218557216|ref|YP_002390129.1| transcriptional regulator, lysR family [Escherichia coli S88]
 gi|237707712|ref|ZP_04538193.1| transcriptional regulator YcjZ [Escherichia sp. 3_2_53FAA]
 gi|331645475|ref|ZP_08346579.1| LysR-family transcriptional regulator [Escherichia coli M605]
 gi|91070938|gb|ABE05819.1| hypothetical transcriptional regulator YcjZ [Escherichia coli
           UTI89]
 gi|115511698|gb|ABI99772.1| putative transcriptional regulator [Escherichia coli APEC O1]
 gi|218363985|emb|CAR01650.1| putative transcriptional regulator, lysR family [Escherichia coli
           S88]
 gi|226898922|gb|EEH85181.1| transcriptional regulator YcjZ [Escherichia sp. 3_2_53FAA]
 gi|331045637|gb|EGI17763.1| LysR-family transcriptional regulator [Escherichia coli M605]
          Length = 322

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 30  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 89

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 90  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 149

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 150 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 209

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 210 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 267

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V+   ++  L++++++   P+F  Y+ Y
Sbjct: 268 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 300


>gi|290510939|ref|ZP_06550308.1| transcription regulator protein, MDR efflux pump cluster
           [Klebsiella sp. 1_1_55]
 gi|289775932|gb|EFD83931.1| transcription regulator protein, MDR efflux pump cluster
           [Klebsiella sp. 1_1_55]
          Length = 294

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 141/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT +G +  
Sbjct: 7   MQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTPEGLQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E ++  L ES  +P G+LR+     +   ++  +L +F   YPDI + + 
Sbjct: 67  AQCREILALIEHSESSLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR+ + + +SSL+ R L        A+P+YL+    P S + L 
Sbjct: 127 VSDRQVDLIQEGVDCVIRMGE-LNNSSLVARPLGRFRWVTCASPYYLREYGVPSSPEALS 185

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           KH  + +     +  ++F ++    T   P+         VN     ++ C+ G G+A L
Sbjct: 186 KHRAVHYFSGQARRADEFRFVRHGETFSVPVS----GNAAVNETGLYIKMCLAGFGLAQL 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + IV D+     LV ++ D   P   V   YP     +  ++AF  ++
Sbjct: 242 AENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWM 290


>gi|154244279|ref|YP_001415237.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158364|gb|ABS65580.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 305

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 143/289 (49%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT AA+ + + ++++++ +  LE  +  +LF R  R +T+T  G+  +
Sbjct: 7   MRAFVRVVETGNFTRAADLMDMPKATLTKHVQSLEQHLRTRLFNRTTRRVTVTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + + L+     L  +   P G+LRI  +  L   LL   L +FL  YPDI + + 
Sbjct: 67  ERALLILNDLDELDGSLSTAQALPQGRLRIDLSPSLATRLLIPALPDFLARYPDIALDVG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC IR+ + I   +L+ R++  +   A AAP Y+     P   +E +
Sbjct: 127 CTDRPVDLLGENVDCVIRVGE-IHDPNLVARRIGELSFEAVAAPAYIARYGVPSHPKEFE 185

Query: 188 K-HNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             H ++ +   +      F ++  + V    G+ R++C   N+Y++     + G G+   
Sbjct: 186 AGHVVVRYFSALTGRYHPFEFVRGSEVVEVTGDYRMACNDGNAYIAA---GLAGLGVIQS 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P + V++   +  LVR++ D    +  ++  YP +   + +L+ F +++
Sbjct: 243 PVFQVEEHLASGALVRVLTDWTAGAMPIHVVYPPSRHLSNRLRVFVDWV 291


>gi|299134751|ref|ZP_07027943.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gi|298590561|gb|EFI50764.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 295

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 125/262 (47%), Gaps = 10/262 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD++R+F  VARSG    AA++L L+ ++++RQ+S LE E+  +L  R   G TLT  
Sbjct: 1   MDWDRVRIFLEVARSGQILGAAKKLGLNHATVARQLSALEREMKTRLVKRDTTGCTLTRS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     +V  +      +L  +S + +G +R+     +G  LL   L     ++P++
Sbjct: 61  GEALMATAEKVESEFLRVGSQLASTSDRVTGTVRVGAPDGIGNYLLAEQLGALAAMHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL+   +   +S   AD AI + +P +   LI  KL    +  YA+  YL       S
Sbjct: 121 IVQLVPLPRTFSLSKREADIAIMVERP-KEGRLITTKLTDYSLSLYASKQYLDRYPPIQS 179

Query: 183 IQELDKHNLIT-FGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +L  H  IT   D +  + ++  ++  TV       R  C    S +  ++    G G
Sbjct: 180 EADLAGHLFITQVSDFVYSRALDYSSYFDTV----MSRRYEC---GSVVGQVEAVRAGHG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDV 262
           I +L DY  +  P L R++ ++
Sbjct: 233 IGILHDYATRRYPELRRLLPEI 254


>gi|160897802|ref|YP_001563384.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363386|gb|ABX34999.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 326

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 145/291 (49%), Gaps = 13/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF VVAR   F  AAE+L  S + +S++I  LE E+G+KL +R  R + +TE+G +
Sbjct: 30  EDLRVFTVVARKSGFAAAAEELGASPAYVSKRIRLLEQELGVKLLHRTTRRVAVTEEGER 89

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +   ++    E+  +  +P G LR++++   G++++   L   +  +P +Q++
Sbjct: 90  VFHWAQRILDDMDQLMQEVAITRSEPRGLLRVSSSFGFGRHVIAPALSRLVERHPGLQVR 149

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R+L   H    AAP YL     P +  E
Sbjct: 150 LDVFDRLVDVAGEGFDLDVRVGDEI-APHLIARRLADNHRVLCAAPAYLARRGTPRTPAE 208

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L  H+ +     I +  + F  W           +++  L  N+   ++Q+ V G GIAL
Sbjct: 209 LSAHDCLA----IKERDQAFGVWRLRAGAAEQSVKVTGPLSANNGEMVVQWAVDGRGIAL 264

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
              + V  +    R+++  + P +     V+  YP  L+ + K++    F+
Sbjct: 265 RSLWDVGAHLQAGRLVQ--LLPEWRQEANVWAVYPTRLQLSAKVRVCVEFL 313


>gi|113869640|ref|YP_728129.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528416|emb|CAJ94761.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 315

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 133/291 (45%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V   GSF  AA+QL +S + ++R ++ LE+ +G +L  R  R L+LT+ G   
Sbjct: 6   SMRVFSKVVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTDAGETY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   +E  +  +   S   SG LR+ T +  G +LL   L  F  LYPD+   +
Sbjct: 66  LQRCQQILEDVEEAESVVTARSQSLSGTLRLVTPVMFGLHLLPELLARFQQLYPDVVFDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL ++++DI  +  D A+ L      S L+ R L++  +   A+P Y+          EL
Sbjct: 126 ILSDRNVDIVEEGRDVAVMLSDLGLGSHLVARPLLSAEVILCASPGYVAAHAPIRHAHEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIAL 243
             H  I     +P    ++  L     P GE   P  S L  ++     Q  +   G+A+
Sbjct: 186 SHHRCIAMR--LPSAEHEWTLLG----PEGEVTVPIRSGLLCSNAELAHQAALADMGVAM 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L  Y+ + N     LV ++     P   V   YP       K++AF +F+ 
Sbjct: 240 LSSYLARPNIESGKLVHVLPQYQLPRRDVSVVYPSRKFLPTKVRAFIDFLL 290


>gi|212709847|ref|ZP_03317975.1| hypothetical protein PROVALCAL_00896 [Providencia alcalifaciens DSM
           30120]
 gi|212687658|gb|EEB47186.1| hypothetical protein PROVALCAL_00896 [Providencia alcalifaciens DSM
           30120]
          Length = 299

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 129/268 (48%), Gaps = 8/268 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+  VF  V    SFT AA++L+++ S++SR +  LE ++G+ L  R  R + LT
Sbjct: 1   MKATSDEAHVFIEVVEQKSFTKAADKLNIANSAVSRTVKKLEEKLGVNLLKRTTRQIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    +    V  +++T + EL ++   P G LRI     +  +LL   +  F   YP
Sbjct: 61  AEGELYFQRMKNVLQEMQTIEDELLDTQSSPKGLLRIDAATPVTLHLLIPFVAIFRQQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ L+     +++     D AIR  + +  SSL  R L   +    A+P Y++   + 
Sbjct: 121 NIELSLVSSETFVNLIERKVDIAIRAGQ-LADSSLRARPLFNSYRKIVASPRYIETAEKI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H  +TF +  P  +    W    +  +       +  NS  +++Q CV G G
Sbjct: 180 TSVADLRHHTCLTFTE--PTSLN--TWPVNTENGLLIDVADGISSNSGETLLQLCVNGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP 265
           IA L D++V +      L+ ++ D I P
Sbjct: 236 IACLSDFMVNEGIKRGELIELLPDEILP 263


>gi|307552215|gb|ADN44990.1| transcriptional regulator [Escherichia coli ABU 83972]
 gi|320197246|gb|EFW71862.1| Transcriptional regulator, LysR family [Escherichia coli WV_060327]
          Length = 297

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V+   ++  L++++++   P+F  Y+ Y
Sbjct: 243 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 275


>gi|299069854|emb|CBJ41135.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 297

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 125/274 (45%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR  SFT AA QL +S S++S  +  LET +GI+L  R  R ++ TE G
Sbjct: 5   NYHDLLAFLAVARERSFTRAAAQLGVSPSALSHTVRALETRLGIRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + +++     + E    PSG +RI TT    + LL   L + L  YPD++
Sbjct: 65  ERLLQSIAPRFEEIDAELAAISELRDTPSGTVRITTTDYAIRTLLWPKLSKVLHDYPDVK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D    DI  +  D  +RL   +    +  R    + M    AP YLK    P + 
Sbjct: 125 VEFVTDYGLTDIVAERYDIGVRLGDTLAKDMIAARIAPDLRMVIVGAPAYLKLHPAPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W L    R I       L  N    I+   + G G+A
Sbjct: 185 QDLTAHRCINL--RLPTRGGVYAWELKKGQREIQVRVDGQLTFNGVYEILDAALSGYGLA 242

Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273
            +P+ + + +    R   ++ED   P+F  Y  Y
Sbjct: 243 YMPEDLAQPHVAAGRLKWVLEDWF-PTFPGYHVY 275


>gi|307730425|ref|YP_003907649.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584960|gb|ADN58358.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 312

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YP++Q++L
Sbjct: 66  LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYRERYPEVQVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D A+ L   +  S L+ ++L +    A A+P YL+    P +  +L
Sbjct: 126 TLAQRMPDLLDEGFDVALTLATGLPDSGLVSQRLGSAFSIACASPAYLEKHGVPQTPSDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    ++        W  T D P GE  I    +  QVN   ++      G GI 
Sbjct: 186 AHHTCL---QIVTPVFPPDKW--TFDGPNGEETITLGPATFQVNVAEAMAVAATSGMGIG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L+P Y          LV ++ +  +    +Y  YP            R ++  K R W
Sbjct: 241 LIPLYSAISGLRKGELVWLLPEYTSQEMNLYALYPS-----------RQYLDAKIRTW 287


>gi|242241012|ref|YP_002989193.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242133069|gb|ACS87371.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 298

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 146/300 (48%), Gaps = 21/300 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++++ F  V   GS T AA QL  + S ISR I  LE ++G+ L +R  R L+L+
Sbjct: 1   MKITLEEMQAFIAVVDCGSVTAAAGQLGQTASGISRAIGRLEGKLGVTLLHRTTRRLSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        +V   +E  + ++     +PSG+LRI       Q+++   + EF   YP
Sbjct: 61  EEGQIFLLQARDVIQSVEAAEEQMALRREQPSGRLRINAASSFMQHVIVPLIPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+   + D AIR+   ++ SS+  R L    +   A+P YL+    P
Sbjct: 121 QIMLELNTDDVFIDLLEQHTDVAIRI-GALRDSSIHARLLGCTRLRVLASPDYLRRRGTP 179

Query: 181 LSIQELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           L +++L  H L+ F      +L P   E  ++      PI +P ++     S   +++  
Sbjct: 180 LRVEDLANHTLMGFTQSESLNLWPLRSEMGDYY-----PI-QPAVAA----SNGEMLRLL 229

Query: 236 VL-GSGIALLPDYIVKDNPN---LVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L G GIA L D++ +++     LV+I+ ED +     V   Y       G++ +F +F+
Sbjct: 230 ALHGEGIARLSDFMTREDVAAGLLVQILPEDTLDVRLPVNAVYYRNTALAGRIVSFLDFL 289


>gi|16263460|ref|NP_436253.1| putative transcriptional activator [Sinorhizobium meliloti 1021]
 gi|14524153|gb|AAK65665.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 383

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 5/249 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +RVF  VA+  SFT AA QL ++  +++R +S LE  +G++L  R  R ++LT  G
Sbjct: 3   DLSDIRVFLAVAQQRSFTAAARQLSMTPPTVTRSVSALEQSLGVQLLLRTTRQVSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        +  + +  + +L+E     +G +RI   + LGQ LL   +  F   +P + 
Sbjct: 63  AVYAARVEPLIRQFDQVRDDLREEQGDVAGLIRINAPLSLGQQLLPDIVSGFRAEHPQVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ IDI  +  D A+R+ +  +  S I RK+  +     A+P YL     P + 
Sbjct: 123 VSLSLTDRFIDIVSERFDLALRVSEAPRDRSTIWRKVCRVRRILVASPGYLAIFGTPETP 182

Query: 184 QELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  I +  + I +  E  N   T     G+     L  N+   I +    G G+A
Sbjct: 183 DDLSRHGCIAYDEEAISETWELTNGGRTRKALAGK----VLAANNGELIAKLVEDGQGLA 238

Query: 243 LLPDYIVKD 251
           LLP +IV D
Sbjct: 239 LLPHFIVGD 247


>gi|146291803|ref|YP_001182227.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145563493|gb|ABP74428.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 329

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 138/289 (47%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  GS 
Sbjct: 4   EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P + ++
Sbjct: 64  FYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I   + +D+     D A  +   + +  L+ R + T  +  YA+P YL     P + QE
Sbjct: 124 VISSAESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPEYLAAHGIPKTPQE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           ++ HN+  F     K   +  W+   +    E R+      NS    +++ + G GI   
Sbjct: 184 IESHNVSLFRLSNGKIFNEL-WIGLEE----EVRVRGNFCSNSVEVAVEFALQGRGIVYA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V    +   LV ++ ++       +  YP     +   + F +FI
Sbjct: 239 PTEVVAEFVETGELVTLLPEIDAHQGECFLAYPSRRYVSLASRRFIDFI 287


>gi|325121474|gb|ADY80997.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 306

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 139/285 (48%), Gaps = 10/285 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++ + GS    A +L+L+  ++SR+++ LE  +G++L  R  R ++LT +G   
Sbjct: 6   ELAFFCLLVKQGSLVATARELNLTPPAVSRRLTQLEERLGVRLLNRTTRRISLTSEGEVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++  +  +  S   P G LR+   +  G++ +   +  F  +YPD+ +QL
Sbjct: 66  FENAVRILKEIDEMERLVSSSRAAPKGVLRVNAPLGFGRSYIAPAISTFAKIYPDVDVQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ I++  +  D +IR  + I  S LI +KL        A+P YLK   +PL+  +L
Sbjct: 126 HLTDRPINLPDEAIDVSIRFGE-IPDSRLIAKKLAANRRLLCASPSYLKTAGQPLTPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I    +I +    + NW  +  + +   ++   L  N     + + + G GI + 
Sbjct: 185 TQHQCI----VIRQNDSAYGNWRLSHGKQVETVKVHGQLSTNDGAVALNWALEGYGILMR 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            ++ V     +  LV+++ED  TP   VY  Y E L  + K+  F
Sbjct: 241 AEWDVAKYLRSGRLVQVLEDYETPPADVYAVYLERLNLSPKVAHF 285


>gi|330809390|ref|YP_004353852.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377498|gb|AEA68848.1| Putative transcriptional regulator protein, LysR family
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 298

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 141/296 (47%), Gaps = 20/296 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L+ F  VA +G  + AA +L +S+S +SR++  LETE+G++L  R  RG  LTE 
Sbjct: 1   MDIEELQTFVEVADAGGISPAALRLGVSKSIVSRRLVRLETELGVQLLARSTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118
           G+      + V       +I++ + ++ P+    G+LR+A  +  G       L E    
Sbjct: 61  GATFRDYAARV-----CAEIDIAKETILPAGALRGRLRVAVPLSFGPTHFAPVLAEMARR 115

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P + IQ    ++ +D+  +  DCAIR+   +Q S+LI R++  I+    A+P Y+K   
Sbjct: 116 HPQLHIQTCYSDRFVDLITEGYDCAIRVGY-LQDSNLIARRIGPIYGKLLASPDYIKAHG 174

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P + +E+  H  +       + M D + + TV RP G       + ++ ++++     G
Sbjct: 175 SPETPEEIVAHQALMQSTEAWQFM-DRDKIITV-RPQGR-----FKADNGIALVAAATAG 227

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GIA LPD +  +   +  LV IM     P    Y   P       K++     + 
Sbjct: 228 LGIAYLPDCLTFEHVASGALVPIMTRHPPPPAGAYVIRPSGQHPARKIRVLTELLI 283


>gi|227884691|ref|ZP_04002496.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|301045913|ref|ZP_07193099.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|227838292|gb|EEJ48758.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|300302089|gb|EFJ58474.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|315295128|gb|EFU54463.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
          Length = 315

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 23  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 82

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 83  ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 142

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 143 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 202

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 203 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 260

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V+   ++  L++++++   P+F  Y+ Y
Sbjct: 261 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 293


>gi|254250705|ref|ZP_04944024.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124879839|gb|EAY67195.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 305

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 137/290 (47%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   +
Sbjct: 7   MRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  +++  +  + ++   P G+L++     + + ++   L  FL  +PDI ++L 
Sbjct: 67  ERSVAVLREIDDMEASVSQARNVPRGRLKVNLPPAMAKQVVVPALPAFLDAHPDIMLELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S +I +++ ++      +P Y   C EP ++ +L 
Sbjct: 127 VTDRQIDLVGEGVDCVVRI-GALDDSGMIAKRIGSLTTCTCGSPAYFARCGEPQTVDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  +    +         W   VD   GEPRI      + VN   + ++  V G G+  
Sbjct: 186 QH--VAVSHISADTGRPRPWDYVVD---GEPRIVQMCGTVAVNDADNYIECGVAGIGLIK 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              Y+V+    +  L  ++ D   P+  +   YP       KLK F +++
Sbjct: 241 TSLYLVEPYLKSGRLREVLTDFNAPARPISVLYPPNRHIPVKLKVFVDWL 290


>gi|330909576|gb|EGH38090.1| LysR family transcriptional regulator YhjC [Escherichia coli AA86]
          Length = 323

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 139/288 (48%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M  YA+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNYASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+        S L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGSMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|288960083|ref|YP_003450423.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912391|dbj|BAI73879.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 306

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 133/294 (45%), Gaps = 12/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V   GS + A   L +S + +S +I  LET +G++L  R  R L  TE G  
Sbjct: 5   ENMRIFVRVVELGSLSAAGRNLRMSPAMVSHRIQQLETHLGVRLLNRTTRQLQATETGMD 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   EV   +E  Q  +   S  PSG +R+   +  G+ +L   + +F   +P ++++
Sbjct: 65  FYQSCLEVLEAVERAQSSIAAGSGVPSGSVRVTAPLGFGRRILAPLVPDFCAAHPLVEVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+  +  D A+R+   ++ SS + RK+  +     AAP YL     P +  +
Sbjct: 125 LRLSDHLLDLLREAVDVAVRMAV-LKDSSFVVRKIADVRRVLVAAPAYLSERGRPSTPAD 183

Query: 186 LDKHN--LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  HN  L+ F        + + W +     P+  P       +    +  + + G GIA
Sbjct: 184 LSGHNCLLLRF-----PGTQQYQWSVLEGGEPVKLPVSGRFDADDGDVLTGWALDGRGIA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + P + V D   +  L  ++ D      T+   YP       K++AF + +  K
Sbjct: 239 MKPLWEVADHLASGALAPVLPDFPPEPVTLAVLYPHRALVPAKVRAFADHMVPK 292


>gi|188534529|ref|YP_001908326.1| transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188029571|emb|CAO97448.1| transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 297

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 128/275 (46%), Gaps = 6/275 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHALKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++          LE     L + +   SG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIADLEQELESLVQLNGPASGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  ++I     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVNIVEGRFDAGIRLGESVDKDMIAVRIGPDMRMAVVGAPSYFAVNPVPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       +  N     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVRVEGQVTFNLLAERIDAVLSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            +P+ +V+D   +  LV++++D   P    Y  YP
Sbjct: 243 CVPENMVQDYIKSGELVQVLQDWCPPFSGYYLYYP 277


>gi|70728671|ref|YP_258420.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342970|gb|AAY90576.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 299

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 124/272 (45%), Gaps = 9/272 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F V+  +GSFT AA+QL  S+  +S++IS LE    + L  R  R L LT  G+ 
Sbjct: 2   DDLAAFAVLVEAGSFTLAAQQLGCSKGQLSKRISALEARYAVVLLQRTTRRLDLTAAGAA 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  ++E     L        G +R+   + LG+    G L EF   YP +QI+
Sbjct: 62  LLPQAQALVAQVERAHQALARLKDDMVGPVRLTVPVSLGETFFDGLLLEFSRHYPQVQIE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+N   D++ +  D A+R  +      L+ R L+  H    A+P YL+   EP + QE
Sbjct: 122 LDLNNSYRDLTREGFDLAVR-SEVANDQRLVARPLLAWHEMTCASPAYLEQYGEPRTPQE 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  H  +    L         WL      +   R+S     N Y  + +  ++G+GIA L
Sbjct: 181 LAGHRCL----LNSHYSGREEWLYHQRHELLRVRVSGPFASNHYNLLKKAALVGAGIARL 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           P Y++     +  L  ++ D  T S  +Y  +
Sbjct: 237 PSYVLHSELADGRLRWLLRDYQTRSMPMYLVH 268


>gi|107023025|ref|YP_621352.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686733|ref|YP_839980.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893214|gb|ABF76379.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652448|gb|ABK13087.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 305

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 137/290 (47%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   +
Sbjct: 7   MRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  +++  +  + ++   P G+L++     + + ++   L  FL  +PDI ++L 
Sbjct: 67  ERSVAVLREIDDMEASVSQARNVPRGRLKVNLPPAMAKQVVVPALPAFLDAHPDIMLELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S +I +++ ++      +P Y   C EP ++ +L 
Sbjct: 127 VTDRQIDLVGEGVDCVVRI-GALDDSGMIAKRIGSLTTCTCGSPAYFARCGEPRTVDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  +    +         W   VD   GEPRI      + VN   + ++  V G G+  
Sbjct: 186 QH--VAVSHISADTGRPRPWDYVVD---GEPRIVQMCGTVAVNDADNYIECGVAGIGLIK 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              Y+V+    +  L  ++ D   P+  +   YP       KLK F +++
Sbjct: 241 TSLYLVEPYLKSGRLREVLTDFNAPARPISVLYPPNRHIPVKLKVFVDWL 290


>gi|298717381|ref|YP_003730023.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1]
 gi|298361570|gb|ADI78351.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1]
          Length = 303

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 146/295 (49%), Gaps = 18/295 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V  +GSFT AA+ L L+++ +S  I  LE E+G+ L  R  R ++ T+ G + 
Sbjct: 6   RLGIFVAVVEAGSFTGAAQTLGLTKAVVSFNIKQLEEELGVSLLIRSTRRVSATDTGERF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++ H  E+   +++       G LRI TT + G  ++   L +F + +P ++I  
Sbjct: 66  YDRCLKLLHDAESALEDVRGDHAGLCGSLRITTTHEYGARVIVPALADFAVKHPQLRIHH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +K+ D+     D AIRL   +  SS   R +    + A AAP YL   ++  SI++L
Sbjct: 126 VSSSKNDDLIAGRFDVAIRLGH-LADSSHHARLIDQFDILAVAAPCYLHTLKDA-SIRDL 183

Query: 187 DKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSIMQYCVLG 238
            +   +     I   +     +W  T+  P GE  +      + +  +S  S++ + + G
Sbjct: 184 SQ---LASAKWIAHSRLSTPLSWQVTM--PEGESVLMSAYQPAMVTADSASSLLAFALAG 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +G+A+LP ++V+D      LVR++ D   P   +Y  YP       K++ F +F+
Sbjct: 239 AGVAILPVWLVQDEIEKGGLVRLLPDNQFPRQGIYALYPNTRHVPEKVRTFIDFL 293


>gi|224825339|ref|ZP_03698444.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602260|gb|EEG08438.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 320

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 134/292 (45%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD ++ F  VAR+ + + AA++L +  +++SR+I  LE  +G  LF +  + G  LT 
Sbjct: 11  LNWDDIKFFLEVARTHTASSAAKRLGVDYTTVSRRIRALEQALGALLFEKSRSAGFVLTV 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L R    +   L+    E+  +    SG +RI  T   G   +   +  F   YPD
Sbjct: 71  DGQQLLRYAEAMESALQAACEEVSGTGFALSGHVRIGCTEGFGSGFVTPQISRFQDRYPD 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I++S   AD AI L +P +    +  KL    +  YA P YL       
Sbjct: 131 ITVDILPVPHFINLSRREADIAITLERP-ERGPYVCSKLCDYRLLLYATPDYLARHPPIR 189

Query: 182 SIQELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             ++L  H  IT+ D     PK +   + L     P        L+  S ++  Q  + G
Sbjct: 190 QREDLAGHRFITYVDDLAFSPKLLYMDDVLPGAKSP--------LRSTSVIAQYQAALQG 241

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +A+LP ++V D+P L R++ + +  +   +  Y E L+   ++    +++
Sbjct: 242 RALAILPCFLVGDDPRLTRVLPEQVAVTRQFWMYYSEDLRKLKRITLAADYL 293


>gi|307304416|ref|ZP_07584167.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306902618|gb|EFN33212.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 307

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 10/287 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L  F  VA   SFT AA +L ++QS++S  I  LET +G++L  R  R + +TE G
Sbjct: 5   DFNDLLWFLAVAEERSFTRAAAKLGITQSTLSHTIKRLETRMGLRLLTRTTRSVAVTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +     +      L     KPSG ++I  +    ++L+   L+  LL YPDI+
Sbjct: 65  ERLLRSLAPRISAIRDEIAALMAFRDKPSGSVKITLSDHALESLVWPKLQPVLLEYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  DN   +I  D  D  IRL + ++   +  R      + A A+P YL +   P   
Sbjct: 125 LELSRDNGFRNIVEDGFDAGIRLGESVEKDMIAVRIGPDWRLLAVASPDYLADRPLPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           QEL +HN I       +     +++   ++   E R+     L  NS   ++   + G G
Sbjct: 185 QELIQHNCINSR----QATGGGHYVWEFEKNGQELRVRVDGQLTFNSSYPMVDAALKGHG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           IA LP+ +V  +     LV ++E    P    Y  YP    N+   K
Sbjct: 241 IAYLPEDLVAGHIAAGRLVALLEPWSPPFAGYYIYYPSRHHNSPAFK 287


>gi|251791409|ref|YP_003006130.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247540030|gb|ACT08651.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 297

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 6/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F +VA+  SFT AA +L +SQS++S  +  LE  +G++L  R  R ++LTE G
Sbjct: 5   NFSDLISFRMVAQEKSFTRAAAKLGISQSALSHAMRSLEERLGVRLLTRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S   ++LE    +L E   KP+G +R+         +L   LK FL  YPDI 
Sbjct: 65  ERLLGNISPSLNELEYALEDLGEMRDKPAGNIRLTAGEHAVNFVLWPVLKPFLSQYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI  +  D  +RL + +    +  R    + M    +P Y  +   P + 
Sbjct: 125 LEITVDNTLTDIVHERFDAGVRLGEQVAKDMIAVRIGPDMRMAVVGSPAYFAHHPRPDTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q L +H  I     +P     F W  + D R I       L  N+    +   + G G+A
Sbjct: 185 QSLQQHRCINM--RLPTLGGLFAWEFSRDGREIRVRVDGQLTFNNLQHRIDAALSGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P+  ++       L++++E    P    Y  YP   ++T     F
Sbjct: 243 YVPEDTIRSAVAEGRLIQVLEAWCEPFPGYYLYYPSRKQHTAAFSLF 289


>gi|149909023|ref|ZP_01897682.1| Hypothetical transcriptional regulator, LysR family [Moritella sp.
           PE36]
 gi|149808034|gb|EDM67977.1| Hypothetical transcriptional regulator, LysR family [Moritella sp.
           PE36]
          Length = 300

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 8/283 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE   +++S +S++IS LE ++G++L +R  R LTLTE G  
Sbjct: 5   DDLVLFTQVIEQGSFSKVAEANKVTKSVVSKRISRLEEDLGVQLIFRTTRKLTLTEAGEM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +    +     +   S   +G ++++     G+ LL   + EF   +P + + 
Sbjct: 65  LFYRAKGIAQTAKNAFDTVTSYSETLAGHIKMSVPTISGELLLARAVAEFCEKHPGLTVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + ++N  +D+  D  D  IR    ++ SSLI R +        A+P YL    EP   ++
Sbjct: 125 MSMNNDFVDLVADGYDLVIRTGH-LEDSSLIARHIFNSRWMICASPEYLAQQGEPQFPEQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  +N + +     +    FNWL T D      ++S     N+ +++ Q  + G G+A L
Sbjct: 184 LAPYNCLGY---TCQTSGAFNWLFTRDDATYNVKVSGNFSSNNAVALKQAALAGKGLAYL 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           P  +V    DN  LV ++         +Y  YP   K   K++
Sbjct: 241 PKCLVYNELDNGKLVEVLSQQTAKVIGIYAVYPYTRKPAKKVQ 283


>gi|170720217|ref|YP_001747905.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758220|gb|ACA71536.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 302

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 137/301 (45%), Gaps = 22/301 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  V   GS + AA+QL LS+  +SR ++ LE  VG +L  R  R L+LT  G +
Sbjct: 5   NAMRVFVTVVDLGSQSAAADQLQLSRPVVSRYLAELEDWVGARLMQRTTRKLSLTAAGLE 64

Query: 66  LHRVTSEVYHKLETT---QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                    H LE     Q  +Q+ +  P G LRI+ +   GQ  L   +  ++  YP +
Sbjct: 65  ---TLPRCRHLLELAGDLQAAVQQPADAPRGALRISVSTSFGQAQLVDAVAAYVRRYPGV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L + ++ +++  +  D AIR    +   +LI R+L        AAP YL     P  
Sbjct: 122 KVELQMLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLTVCRSVVCAAPAYLHEHGTPQR 180

Query: 183 IQELDKHNLIT---FGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++EL +HN +T   FG  +        W   V  +PI  P    +  N  +++ +  + G
Sbjct: 181 VEELSQHNCLTHAYFGHSV--------WHFEVGGQPITVPVEGNISANEAMTLQKAALAG 232

Query: 239 SGIALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +G+A+LP Y          LVR++         +   Y         L+   +F+  + R
Sbjct: 233 AGVAMLPTYQAAAAMRTGELVRLLPYARPQELNLNAVYTSRKHMPATLRTMLDFLAQRFR 292

Query: 296 D 296
           D
Sbjct: 293 D 293


>gi|77458663|ref|YP_348169.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382666|gb|ABA74179.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 298

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 143/291 (49%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  SGSFT AA+ L+L ++++S+ I  LE  +G++L  R  R LT+T  G+  +
Sbjct: 7   IRTFARVVESGSFTKAADSLNLPKTTVSKLIGQLENHLGVRLLQRTTRRLTVTADGASYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           ++T ++ H+L+       ++   P GK+R+         L+   L +F   YPDIQ+ L 
Sbjct: 67  QLTQQLLHQLDDIDQGFSQAQGLPRGKIRVDIGGSTATMLVIPELPKFFERYPDIQVDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR   P+   +L  R+L  +     A P YL+    P    +L 
Sbjct: 127 VSDRPVDLISERVDCVIR-GGPLTEQTLAVRRLGEVSWTTCATPDYLQRHGTPSHPLDLA 185

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H LI +     G ++P   +       ++   G+  IS  + N++L+     + G GI 
Sbjct: 186 SHQLIAYRSASTGRILPSNFQRNGERHQIE---GKGLISVNESNAHLAA---GLAGLGII 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               Y V+   +   LV I+ED   P++  +  YP     + +++ F +++
Sbjct: 240 HTFSYTVRTAIERGELVPILEDWRPPAYPFHVLYPPNRHLSNRVRVFIDWL 290


>gi|291619338|ref|YP_003522080.1| PtxR [Pantoea ananatis LMG 20103]
 gi|291154368|gb|ADD78952.1| PtxR [Pantoea ananatis LMG 20103]
          Length = 313

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 20/296 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +  SGS + AA QL ++Q +ISR++  LE  +G+KL  R    L LT+ G + +
Sbjct: 16  MHTFIRIVESGSLSAAALQLGITQPTISRRLQSLEQGLGLKLILRTTHALKLTDDGERCY 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++       + EL  +   P G LR+      GQ+ L   L  F+  YP ++I+ +
Sbjct: 76  AQARQLLATWHALEDELTGAGSDPVGILRVRAPHAFGQDQLVTPLVNFMRRYPRLRIEWM 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++  D   +  DCAI++   +   S++   L  +     AAP  L+        Q   
Sbjct: 136 LNDRTPDFVAENVDCAIQVGA-LTDPSVVAVLLAEVPRIVVAAPALLQ--------QYPP 186

Query: 188 KHNLITFGDLIPKCMEDF--NWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGI 241
            + +   GDL    +  F  N +A   +  GEP     +  L  +S  ++ +  + G G 
Sbjct: 187 INQVAQLGDLPWLALTSFYRNEIALQHKDKGEPMNLPIVPLLSSDSLFAVRKAALAGLGT 246

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L  ++++++    NL+++M +   P   V+  YP A     +L AF  F  +KA
Sbjct: 247 AILSTWVIQEDLAQGNLIQLMPEWQAPPLPVWLTYPWASYYPARLTAF--FAMIKA 300


>gi|326317404|ref|YP_004235076.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374240|gb|ADX46509.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 295

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 19/294 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ LR F  +AR+G+   AA +  +  ++++R+I  LE ++G  LF R A G  LTE 
Sbjct: 1   MDWENLRYFLELARTGTLAAAARRTGVEHTTVARRIQALEKQMGESLFAREAGGHRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQE---SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G  L          +ET  + ++    + + P+G +R+  T   G  +L  +L    L Y
Sbjct: 61  GRHL----LPAVEAMETAVLGVERVRPTGIGPAGLVRVGATEGFGTQVLAPHLARLTLQY 116

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L+   + + +S   AD  I L +P + + ++  KL    +  Y    YL   R 
Sbjct: 117 PHLSVDLLALPRMLHLSRREADIVISLERPTRGAVIVS-KLADYTLRLYGQKEYLAR-RP 174

Query: 180 PLSIQE-LDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           P++ +E L  H  +++ D  L  K ++  + L   +R          +  S  +  +   
Sbjct: 175 PIARREDLRHHAFVSYVDDLLFTKELQFLDQLVPPER-------FAFRSTSVAAQYEAVR 227

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+G+ +LP ++   +P L R++ D    + T +   P   K   + +A  +F+
Sbjct: 228 AGAGLGVLPAFLAGSDPLLERVLPDEARFTRTFWMSMPAEAKYQARTQAVWDFL 281


>gi|152994718|ref|YP_001339553.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835642|gb|ABR69618.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 297

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 138/296 (46%), Gaps = 12/296 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  V   GS T AA+ + +S+  +S  +  LE ++G+KL  R  R L
Sbjct: 1   MEVSFEQLKSMVVFAQVVEQGSLTAAAKFMGISRGVVSYHLKKLEEQLGVKLLNRTTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   ++    +  +     ++++++  +P GKL+I+  ++LG  ++   L EF  
Sbjct: 61  SLTETGEAYYQRCRAIAFQAHEANLQIEKAKQEPEGKLKISCPVNLGLQVIVPALNEFRR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP I++ + L ++ ++I  D  D AIR   P+  S L   KL T       +P Y +  
Sbjct: 121 LYPLIELNVSLSDEVVNIIKDGVDLAIR-GAPLLDSGLQASKLKTFETCLCGSPEYFRRR 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P   +EL  H+ + +    P    +   L+  D+         +  N+  +   +   
Sbjct: 180 GRPTKPEELYDHDWVVY---TPAA--NTVHLSQGDKSFSLSVHGGVSTNNAAARTIFLEG 234

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GI  +P Y       N +L RI+ D       VY  +P     + KL+   +F+
Sbjct: 235 GNGIGRIPMYDALPRIANGSLERILSDYKCTGIDVYAVFPPGTAESKKLRLLLDFL 290


>gi|224823750|ref|ZP_03696859.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224604205|gb|EEG10379.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 318

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 138/295 (46%), Gaps = 17/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   A +GSF+ AA +L +S ++IS+ I+ LE E+ ++LF R  R LTLTE G + +
Sbjct: 7   LMVFMTTAENGSFSDAARKLGVSPAAISQSIARLEQELEVRLFNRTTRQLTLTEDGRRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + L+    +L+ S  +P+G LRI+     G++ +   + EF   +P I++   
Sbjct: 67  AQCRGPVNNLDAAINQLKASRDEPAGHLRISLPNSFGRHFILPLMGEFCQRHPKIRVFFG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD+   D+  D  D  +R+   +  S L  R L  + ++  AAP Y      P    +L 
Sbjct: 127 LDDHFSDLIEDGYDVGVRVGM-MPDSRLSARHLAQLPLYTVAAPEYWSKNGRPQKPDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGI 241
            HN I +    P       W    D   GE RI  L+VN         ++ +   LG G+
Sbjct: 186 NHNCINY--QFPTSGRLCKWEFERD---GE-RIP-LEVNGIYTLNDIEAVCEMARLGFGV 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A +P +       +  L  ++ D I+   ++Y C+P       + + F +++  K
Sbjct: 239 AQVPGHEAMPYLRSGELEAVLTDFISLERSIYICFPHREHIAPRTRVFVDYVAEK 293


>gi|153829226|ref|ZP_01981893.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148875264|gb|EDL73399.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 309

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 6/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  V ++L  R  R ++LT
Sbjct: 14  MLNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLT 73

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP
Sbjct: 74  TEGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYP 133

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N    
Sbjct: 134 KVNFDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPI 192

Query: 181 LSIQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +IQ+L++H+ +    L +P           V   +     S    NS L +M     G 
Sbjct: 193 HTIQDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGL 250

Query: 240 GIALLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  +  +++   P+  LVR+  D    S T+   YP       +++ F +++
Sbjct: 251 GVGSIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 303


>gi|302187121|ref|ZP_07263794.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 309

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 138/288 (47%), Gaps = 15/288 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA  GSFT AAE+L+L+ S+IS+ I+ LE  +  +LF R  R L+LTE G   +R 
Sbjct: 12  VFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRT 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + V   LE  +I L  +  +P GK+RI      G+  +   + +F+  +P +Q  +   
Sbjct: 72  CTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFS 131

Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D   +  D  +R+       +++  +   T  +   AAP Y+    EP ++ +LD 
Sbjct: 132 DRYVDPVHEGIDIVVRIGGSDAWPAAMAHQFFGTQKLIFCAAPEYVNQYGEPKTVSDLDA 191

Query: 189 HNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           H  I +G      IP   +        +R I  P I+   V      +   + G GIA L
Sbjct: 192 HRCIGYGQNDGMAIPWYFKGRQ-PGDRERRIMHPHIA---VGDGEGEVMAVLAGLGIAQL 247

Query: 245 PDYIVKDNPN---LVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAF 286
           P ++V+ + N   LV ++ D+ T   P   V+    EAL     L A+
Sbjct: 248 PTWLVQAHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAY 295


>gi|295095771|emb|CBK84861.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 296

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 131/276 (47%), Gaps = 11/276 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA QL +SQS++S  +  LET + ++L  R  R +  TE G
Sbjct: 5   NFNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRNLETRLEVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S    ++E     L+++  +P+G +R+         +L   LK F+  YPDI 
Sbjct: 65  EQLFMRLSPHLLEIEQELTALRDTRDRPAGNIRLTAGEHAMSAVLWPVLKPFMAQYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  +RL + +    +  R    + M    +  YL+    P + 
Sbjct: 125 VEVTVDNGLTDIVDGRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSAEYLQRFGVPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           ++LD+H  I     +P     + W    +R   E R+     L +NS    +     G G
Sbjct: 185 EQLDQHRCINM--RLPTRGGLYAW--EFERDGRELRVRVDGQLILNSLPQRIDAAENGLG 240

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           +A +P+  V+D      LVR++E    P+FT Y  Y
Sbjct: 241 LAYVPEDAVQDALAESRLVRVLE-AWCPAFTGYHLY 275


>gi|227114358|ref|ZP_03828014.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 295

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 139/292 (47%), Gaps = 17/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   +  GSF  AAE L +S   +++Q++ LET +G++L  R  R  +LT+ G + +
Sbjct: 7   MSVFVKASELGSFAAAAEALGISPQMVAKQVAWLETRLGVRLLNRTTRKQSLTDIGLRYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  + E      +E  V PSG +++   +  G +LL   +  +L  YPD QI L 
Sbjct: 67  ERCKVVLAEAEDADAVAREMQVTPSGMIQVNAPVTWGSHLLAPFITHYLARYPDTQIALT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D   +  +  IR+ + +  SS++   L +  + A A+P YL     P +   L 
Sbjct: 127 LNDRLVDPIEEGFEVIIRIGE-LADSSMVAWPLQSYSLIACASPDYLAREGVPDTPASLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +H  + +G  +        W+   D      RP G      L  N + +++   + G GI
Sbjct: 186 RHACLIYG--LRTAATSCRWVFQKDGKSEEIRPQGR-----LFANDWNALLHAAIEGYGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P+ +++   D   LV+++ D   P+  V+   P   ++  K+K F + +
Sbjct: 239 TLGPEVVLRKEIDRGRLVQVLSDYNGPARPVHVMVPMGRRSAVKIKTFVDAV 290


>gi|163795192|ref|ZP_02189160.1| Transcriptional regulator [alpha proteobacterium BAL199]
 gi|159179590|gb|EDP64119.1| Transcriptional regulator [alpha proteobacterium BAL199]
          Length = 305

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 137/290 (47%), Gaps = 22/290 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   GSF+ AA +L LS+S++S+QI+ LE  +G +L  R  R L LTE G++L+   
Sbjct: 12  FARVVEEGSFSKAAVRLGLSKSAVSKQIARLEDRLGTRLLNRTTRRLALTEAGTRLYDRC 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  + E  + E      +PSG LR++T +  GQ  L  ++   L  +P + ++L+L++
Sbjct: 72  QRIVAEAEAAEAEAGSMQTEPSGLLRVSTGMSFGQEHLAAHVPALLERHPGLSLELVLND 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D A+R+ + +  S LI R+L  +     AAP YL     P   ++L  H 
Sbjct: 132 RIVDLVEEGYDVALRIAE-MPDSPLIARRLAPVRRILAAAPSYLARRGIPALPKDLQDHG 190

Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIG-------EPRISCLQVNSYLSIMQYCVLGSGIA 242
            + +      C     W L   D   G        PR+     N+  ++       SGI 
Sbjct: 191 CLGYSYSAGGC----TWTLVGTD---GTHHSHRFRPRVLANNGNALAAMAAAG---SGIV 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +P +++        LV ++ D   P   +Y  YP       K++AF +F
Sbjct: 241 QMPTFMLSRYLKEGTLVPVLADFEPPPVGLYAVYPPGRPLAAKVRAFIDF 290


>gi|255320475|ref|ZP_05361656.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262378370|ref|ZP_06071527.1| transcriptional regulator [Acinetobacter radioresistens SH164]
 gi|255302447|gb|EET81683.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262299655|gb|EEY87567.1| transcriptional regulator [Acinetobacter radioresistens SH164]
          Length = 300

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 144/295 (48%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  +++   ++ +  +     +   S KP G ++++  + + QN +   L +FL  YP
Sbjct: 61  DIGMDIYQHAQDMMNAAQAAHDLIDHLSSKPRGVIKVSLPVSIAQNEIAKILPDFLKQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QL + N+ ID+  +  D A+R+R  + +  +LI R+   I  H  A+  YL     
Sbjct: 121 EIKVQLSVTNRRIDVINEGIDVALRVRFNLDNDPNLIIRQFQRIEQHLVASQAYLNEYGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLG 238
                +L +H +++   +I   ++    L   +    + +I+ + + S L ++ Q    G
Sbjct: 181 LTHPDQLAEHRILS---MIDDHLDQQLTLHDRENKSRKFKINPVVMGSDLMMLAQLARQG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLPD +  D   +  LVR++ D  TP    +  YP      G+L + R FI
Sbjct: 238 CGIALLPDSVTADLVRHGELVRVLPDWNTPHGVFHAVYP---SRRGQLPSVRVFI 289


>gi|229515331|ref|ZP_04404791.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
 gi|229348036|gb|EEO12995.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
          Length = 296

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  V ++L  R  R ++LT +G
Sbjct: 4   ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLTTEG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP + 
Sbjct: 64  DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLSEFYKQYPKVN 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N     +I
Sbjct: 124 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPINTI 182

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L++H+ +    L +P           V   +     S    NS L +M     G G+ 
Sbjct: 183 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 240

Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  +++   P+  LVR+  D    S T+   YP       +++ F +++
Sbjct: 241 SIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 290


>gi|229521864|ref|ZP_04411281.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
 gi|229340789|gb|EEO05794.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
          Length = 296

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  V ++L  R  R ++LT +G
Sbjct: 4   ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLTTEG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP + 
Sbjct: 64  DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYPKVN 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N     +I
Sbjct: 124 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPINTI 182

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L++H+ +    L +P           V   +     S    NS L +M     G G+ 
Sbjct: 183 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 240

Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  +++   P+  LVR+  D    S T+   YP       +++ F +++
Sbjct: 241 SIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 290


>gi|184156728|ref|YP_001845067.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332873139|ref|ZP_08441096.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183208322|gb|ACC55720.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322506617|gb|ADX02071.1| transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323516494|gb|ADX90875.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332738651|gb|EGJ69521.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 298

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 141/294 (47%), Gaps = 18/294 (6%)

Query: 6   DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L+ FY+   VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+ 
Sbjct: 2   DRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPDI
Sbjct: 62  GQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL   +   D+     DC +R+ + + +SSLI R +  + M   A+P YL++   P  
Sbjct: 122 HLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASPQYLQDYGVPEQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + +L++H LI +   + +   +F +   +  +D        S L VN+  + +     G 
Sbjct: 181 LNDLEQHKLINYAGAVGEKQGEFIYQGGIVMMD--------SALSVNNTEAYIAAACAGL 232

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP Y V+D      LV ++     PS  +   YP       +L+ F N++
Sbjct: 233 GIIQLPYYDVQDKIEQGILVEVLSAYSAPSLPLNILYPNRSYIPKRLEVFMNWV 286


>gi|167581443|ref|ZP_02374317.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 300

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 134/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LR++     G+  +   +  F   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ +L
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGIPETLADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWTFVDDGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|66046836|ref|YP_236677.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257543|gb|AAY38639.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 302

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 142/290 (48%), Gaps = 10/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGS T A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAELEQVEQGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYRDVSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P + +
Sbjct: 124 EVDLSDRPVDVISEGYDVVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQNPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ + +G           W     D+P+       ++ N+   + +  + G GI  
Sbjct: 183 DLHTHDCLPYGH-----SRQAQWRFQGQDKPLTLNVSGRMRANNGELLRESAIAGLGITY 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +IV       +LVR+++D+     T+   YP+  + +  ++AF  F+
Sbjct: 238 LPTFIVGAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287


>gi|86136307|ref|ZP_01054886.1| probable transcriptional regulator [Roseobacter sp. MED193]
 gi|85827181|gb|EAQ47377.1| probable transcriptional regulator [Roseobacter sp. MED193]
          Length = 299

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 142/298 (47%), Gaps = 15/298 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR+F +VA  GSF+  A     + S++SRQIS LE  +  +L  R  R   LTE G
Sbjct: 3   DLNLLRLFVLVADQGSFSAVARSTRATPSAVSRQISRLEENLNTRLLQRTTRRQELTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   ++   ++T +  +   S  PSG LRI    DL   LL   L EFL  YPD++
Sbjct: 63  QVYLSHARQIIEDVDTARQAVSRLSNAPSGVLRITAEADLALTLLSPVLPEFLERYPDLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL   +   D+     D AIR+   +  SSLI ++L        A+P YL+    P   
Sbjct: 123 VQLHTSSTMEDLVSRGIDVAIRVGH-LSDSSLIAKRLTMSRSLLVASPEYLEQDIPPQQP 181

Query: 184 QELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++L  H+ ++F    DL+    +    +  V  P+  P    +Q +S + + +    G G
Sbjct: 182 EDLRNHSCLSFKVDTDLVTWRFKSGEEVTNV--PVTGP----IQASSLVLLKEAAKSGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDV-ITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK 293
           IA+LP ++++    +  LV ++    + P+ T +   YP       K++   +F+ ++
Sbjct: 236 IAMLPVWMLRAELKSGTLVPVLPGFPLDPAATPISAVYPSGRNLASKVRVLIDFLAIR 293


>gi|172060998|ref|YP_001808650.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993515|gb|ACB64434.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 301

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 126/273 (46%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ EL
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPATLAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W       +   R+   ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWAFQEGDKVVSIRVNGTMECSDGAVLHEWCLAGYGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            + V  +     LV +++    P   ++  +P+
Sbjct: 242 WWEVGGDIAAGRLVSVLDAFAAPPIGIHAVFPQ 274


>gi|296102273|ref|YP_003612419.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056732|gb|ADF61470.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 301

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 131/284 (46%), Gaps = 8/284 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSFT AA+ L++  +++S+ +  LE  + I+L +R  R +  T +G++ +
Sbjct: 7   MRAFTRVVETGSFTRAADSLNMPIATLSKLVKALEAHLEIRLLHRTTRRVVTTPEGAEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   +E      + S   P G LR+       +++L   L +F+  YPDI+I L 
Sbjct: 67  EKAVRVLIDIEDIDTSFRVSHATPKGHLRVDIGGSTARDVLIPLLPDFMQRYPDIRIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           + ++ +D+     DC IR   P+  S+LI R L    M   A P YLK    P   QEL 
Sbjct: 127 VADRPVDLISGNVDCVIR-GGPLNDSTLIARHLGDADMVTCATPGYLKKHGVPAYPQELR 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
           + H LI++  L P     F +       + E  IS  L VN   + +   V G GI    
Sbjct: 186 NGHKLISY--LSPVTGRPFPFRFRKGGEVQEIGISHYLGVNESNAHLAAAVAGLGIIQTF 243

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            Y  K       L  I+ D    ++  +  YP+    T +LKAF
Sbjct: 244 TYSAKTYLQAGTLQEILSDWHPAAYPFHVVYPQNRHLTHRLKAF 287


>gi|253689589|ref|YP_003018779.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756167|gb|ACT14243.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 293

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 132/288 (45%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  +GSF+ A+ +L + Q ++S+ I  LE ++   L  R  RGLT TE G   +
Sbjct: 7   LETFICVFETGSFSAASRRLGIGQPAVSKAIMQLENQLATPLLLRSTRGLTPTEAGQHFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S     L   Q ++   S   SG+LRI   +   +  +   L EF+  +P + + +I
Sbjct: 67  EQISPALKMLGEAQEQVVSGSAALSGRLRICAPVTFARLHIMPRLHEFMAEHPQLNVDVI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ ID+  +  D A+RL + ++ SSLI ++L +  M   A P Y      P S   L 
Sbjct: 127 LDDRPIDLIAEGIDVALRLGE-MKDSSLIAQRLASCSMRLLATPDYFARHGAPASPDVLA 185

Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  + +  G+   + +   +   T   P G  R+S  +      +    + G+G+A+  
Sbjct: 186 AHPAVIYLQGERTNRWIFSRDGAQTTVFPKGRIRVSAAE-----GVRAAVLSGAGLAVAS 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++     ++  +V  ++        ++  YP     + + + F +F+
Sbjct: 241 EWMFAPELESGQVVTALDSWALGKMDLWAVYPGGRMTSARARIFTDFV 288


>gi|224824615|ref|ZP_03697722.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603108|gb|EEG09284.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 298

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 137/296 (46%), Gaps = 27/296 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     V   GS + AA    +  + I R++  LE  +G KL  R  R +TLT++GS  
Sbjct: 6   QLETLVAVVAHGSLSAAARIEGVVPAVIGRRLDALEERLGAKLLVRTTRSVTLTQEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +  +L   +  +   S +  G LR++     G+  +  +   F  L+PD+++ L
Sbjct: 66  YEESLRILAELAEAEAAVASGSARARGHLRVSAPAGFGRRHVAPHAASFQQLHPDVKVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  D  DCAIR+   +  SSL+  +L   +    AAP YL     P ++ +L
Sbjct: 126 DLSDRLVDLVRDRVDCAIRI-SDLSDSSLVAIRLAENYRVVVAAPSYLARHGTPRTLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RIS-CLQVNSYLSIMQYCVLGSGIA 242
            +HN ++ G+      +   W  T D   GEP   ++S  L+ N    +  + + G G+ 
Sbjct: 185 TQHNCLSLGE-----SQSRGWTFTRD---GEPVNLKVSGTLECNDGAVLHDWALQGYGLT 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
               + VKD+     LV +++   +P + VY   P+           R F+ L+ R
Sbjct: 237 WRSLWEVKDDLSEGRLVTVLDSFSSPDYPVYAMVPQ-----------RKFLPLRVR 281


>gi|158424294|ref|YP_001525586.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158331183|dbj|BAF88668.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 305

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 146/289 (50%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  SGSFT AA+ L L ++++S+QI  LET +  +L +R  R +T+T  G+  +
Sbjct: 7   MRAFVRVVESGSFTRAADILALPKATLSKQIQQLETHLSTRLLHRTTRQVTVTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++     L  +   P G+LRI  +  L   +L   L +F   YP+I I + 
Sbjct: 67  ERALAILTDVDELDGSLSTNLTCPRGRLRIDISPSLATGILMPALPDFFSRYPEIHIDIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC IR+ + I++SSLI R++  ++  A AAP Y+    E    ++ +
Sbjct: 127 CTDRPVDLVGENVDCVIRVGE-IRNSSLIARRIGELNFAAAAAPSYIARHGEIQHPKDFE 185

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           K H ++ +          F+++   +    +G   ++    N+Y+S     + G G+ L 
Sbjct: 186 KDHVMVRYFSATTAHYYAFDFIRDAEEVEVLGRYSVALNDGNAYVSA---GLAGLGVILC 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++++   D   LVR++ +  T    ++  YP +   + +L+ F +++
Sbjct: 243 PIFMMQEHLDAGTLVRVLPEWHTQPMPIHVVYPPSRHISNRLRVFVDWV 291


>gi|317053002|ref|YP_004119356.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953329|gb|ADU72800.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 297

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 130/293 (44%), Gaps = 13/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L    +VAR  SFT AA +L +SQS++S  I GLE  +  +L  R  R +  TE G
Sbjct: 5   NFNDLIYLVMVAREQSFTRAAAKLGVSQSALSHSIRGLEERLNTRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +    +   +E   ++L +   KPSG +RI        + L   LK FL  YP++ 
Sbjct: 65  ERLIQNVGPMIADIEKALLQLSDEQGKPSGNIRITAGEHALSSTLWPLLKPFLQAYPEVN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +DN   DI     D  +RL + ++   +  R      M   AAP Y      P + 
Sbjct: 125 VELSVDNTLTDIVSGRFDAGVRLGEQVEKDMVAVRIGPDWRMVVVAAPEYFAQHGLPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
            EL  HN I     +P     ++W    D    E R+     L  N+  S +   + G G
Sbjct: 185 YELQNHNCINM--RLPTLGGIYSWEFYKDGK--EIRVKVEGQLIFNNLASRVDAALTGMG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A +P+  V+   D   L   ++D   P    Y  YP   ++T    AF   I
Sbjct: 241 VAYVPEDCVRKYIDEGKLQIALDDWCAPFAGYYLYYPSRKQHTA---AFSKLI 290


>gi|237799061|ref|ZP_04587522.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806204|ref|ZP_04592908.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021915|gb|EGI01972.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027317|gb|EGI07372.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 302

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 144/290 (49%), Gaps = 10/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+E+L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASEKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +  +  ++E  +  +   + +P G LR++  +      L   L +FL  Y D+ +
Sbjct: 64  SYYESSLRLLAEVEQVEQGITGQNHEPRGTLRLSAPLSFAVAHLGCLLPQFLKRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDVVLRI-GLLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ + +G           W       +    +S  ++VN+   +    + G G+  
Sbjct: 183 DLHAHDCLPYGH-----SRQVQWRFQNAGKVTSLSVSGRMRVNNGELLKDAALAGLGVTY 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +I+     + +LVR+++D+     T+   YP+  + +  ++AF  F+
Sbjct: 238 LPTFIIGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFVEFL 287


>gi|26246310|ref|NP_752349.1| putative transcriptional regulator YcjZ [Escherichia coli CFT073]
 gi|26106708|gb|AAN78893.1|AE016756_76 Hypothetical transcriptional regulator ycjZ [Escherichia coli
           CFT073]
          Length = 322

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 30  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 89

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 90  ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 149

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 150 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 209

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 210 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 267

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V+   ++  L++++++   P+F  Y+ Y
Sbjct: 268 CVPEDMVQEYIESGKLIQVLQE-WCPTFPGYYLY 300


>gi|127513206|ref|YP_001094403.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126638501|gb|ABO24144.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 304

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 21/283 (7%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D  D ++ F  V + GSFT AA++L LS   +S+ +S LE  + ++L  R  R + +
Sbjct: 1   MALDRIDTMKAFTAVVQEGSFTKAADRLGLSSQLVSKYVSQLEEHLKVRLLNRTTRRVNV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G        +V   +E     L   S   SG L+++  +  G + L   L +F   +
Sbjct: 61  TEAGRAYFERCQQVLIDIEEMDNALTNLSETASGLLKVSAPMSFGIHHLPSALVQFQQQH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+++ + L +K +D+  D  D A+R+ + + SSSLI +KL  I +   A+P YL    E
Sbjct: 121 PDVRLDITLTDKKVDLLEDGVDVALRIGQ-LTSSSLIAKKLTPIKLVVCASPEYLAERGE 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQ 233
           P +  +L  HN + F          ++ L       GE   S L++ S L+      +++
Sbjct: 180 PKTPADLIHHNYLHFS---------YSDLGAAFGRFGE-HFSALKIPSDLACNNGDMLVE 229

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
             + G GI + P ++V     +  L  I+ D     F +Y  Y
Sbjct: 230 AAIAGRGIVVQPTFLVSKALRSGKLKAILTDYTPEPFGLYAVY 272


>gi|325127538|gb|EGC50463.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis N1568]
          Length = 299

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVVASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S +EL  H  + F +  P  +   N  A +D      +IS     S   I++  C+ G 
Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++V ++       P L     D   P   VY  Y +   N  +L+ F +F+
Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289


>gi|15601809|ref|NP_233440.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121587164|ref|ZP_01676939.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|153817652|ref|ZP_01970319.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153821727|ref|ZP_01974394.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227812622|ref|YP_002812632.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229505809|ref|ZP_04395318.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229510336|ref|ZP_04399816.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229517532|ref|ZP_04406977.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229605342|ref|YP_002876046.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254850216|ref|ZP_05239566.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746212|ref|ZP_05420159.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262158702|ref|ZP_06029816.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|298499824|ref|ZP_07009630.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9658503|gb|AAF96952.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121548603|gb|EAX58655.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|126511808|gb|EAZ74402.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126520723|gb|EAZ77946.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227011764|gb|ACP07975.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229345568|gb|EEO10541.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229352781|gb|EEO17721.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229356160|gb|EEO21078.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229371828|gb|ACQ62250.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254845921|gb|EET24335.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255735966|gb|EET91364.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262029582|gb|EEY48232.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|297541805|gb|EFH77856.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 301

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELGVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPAYFTLCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 ADHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQELARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|221215627|ref|ZP_03588589.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
 gi|221164456|gb|EED96940.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
          Length = 347

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AA  L +++SS +  +  LE  + ++L  R  R ++LT  G+  +
Sbjct: 7   MQVFTRVVETKSFTGAAASLDMTRSSATTIVQNLEAHLKVRLLNRTTRNISLTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   +   +     S   P GKL++  +  +G+ ++   L EF   YPDI + L 
Sbjct: 67  ERCLRVLADIADAESSFS-SIAAPKGKLKVDMSGAIGRLVVVPALHEFHSRYPDIDLMLG 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +KD+D+  D  DCAIR+  P+  S+L+ R++        A+P YL     P +I++LD
Sbjct: 126 VGDKDVDLVQDSVDCAIRM-GPLADSTLVARRIGVSDFVTVASPEYLARYGIPRTIEDLD 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + +       M + +++    +PI     S L  N   + +Q  + G G+   P +
Sbjct: 185 NHTAVNYFSSRTGRMVEIDFVVD-GKPIDVKMRSRLAANDGEAYLQCGLRGHGLIQTPHF 243

Query: 248 IV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +      +  LV ++E      F +   YP     + +++ F  +I
Sbjct: 244 LALPHLKSGALVEVLEQWRPTPFPISAVYPRNRHLSPQVRVFVEWI 289


>gi|56695133|ref|YP_165480.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56676870|gb|AAV93536.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 298

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 137/285 (48%), Gaps = 14/285 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++ F  VA +GS + AA QL  SQ ++ R +  LE  +G+ LF RHARGL L+  G
Sbjct: 9   DWSLIQSFLAVAETGSLSAAARQLDRSQPTLGRHVQALEQALGLSLFDRHARGLKLSADG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +++  +  + +  +    +     S   +G +RI  ++    ++L   L +     P I+
Sbjct: 69  ARILPLAQQAHRAMTAISVTAAGQSQSLAGTVRITASVFASHHILPPILADIRAAEPAIE 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+  +   ++    AD A+R+ +P Q   ++ R +  + + A AA  YL+    P   
Sbjct: 129 LELVPSDTTENLLFRAADIAVRMYRPRQ-VDIVARHIGDVPLCACAATSYLERKGRPTRA 187

Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++L   +L+ +    +I K M+   W  T        R S  ++ ++  +  Q    G G
Sbjct: 188 EDLLDFDLVGYDADPIIVKTMQALGWPVT--------RHSFAMRCDNQSAYWQLIRAGCG 239

Query: 241 IALLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLK 284
           I      IV  +P LV ++  ++  P   ++   P+A++ T +++
Sbjct: 240 IGFGQRSIVAADP-LVEVLPFELPVPPLEMWLAAPQAMRLTPRIR 283


>gi|328542435|ref|YP_004302544.1| LysR family transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326412182|gb|ADZ69245.1| LysR family transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 304

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  S  F+ AA ++  S++ +S+ I  LE E+G++L  R  R ++LTE G   
Sbjct: 6   RMRCFLQVVESNGFSAAAREMGRSKALVSKYIGELEDELGVRLLNRTTRQISLTEVGEAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++  +++  +++  Q  +Q +  +  G+LR++    +G  LL   + EFL+  P+I + L
Sbjct: 66  YKEAADILQRIDDLQASVQSTHREARGRLRVSAPRSMGDGLLNRAVMEFLVAEPEITLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D AIR+   ++ SSLI RK+        A P  +     P    +L
Sbjct: 126 RLDDRFVDLVEEGFDVAIRV-TDLEDSSLIARKIAPFRTVIVATPEVIAAHGVPQVPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +   I   +   K     NW   VD   I  P    ++VNS  +     +   G    P
Sbjct: 185 AQRPCIVDTNYRFKA----NWAFMVDGERISVPVKGRVEVNSASAARDAALCNLGFLRTP 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              V    +   LV ++E        +Y  YP     +GK+++F +F+
Sbjct: 241 LMFVNADIEAGRLVAMLEAYELDGPAIYAVYPHRRHLSGKVRSFVDFL 288


>gi|91786428|ref|YP_547380.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91695653|gb|ABE42482.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 303

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 103/194 (53%), Gaps = 1/194 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  VAR+G F+ A+ ++ +  +++SR+++ LET +G++LF+R  R + LTE G  
Sbjct: 5   ESITAFVSVARAGGFSAASREIGVPLATLSRRVAELETSLGVRLFHRSTRQIVLTESGIG 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   L+  +  +      P G+L I   +  G+  LQ    EFL  YPDI ++
Sbjct: 65  YFAACQHILEYLKDAEETVVGEYRSPKGELSITAPVGFGRQHLQPVATEFLRAYPDIDLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++ +D+  ++ D A+R+   +  S  + R +  I M  + AP YLK    P    E
Sbjct: 125 LLLVDRMVDLVGEHLDLAVRIST-LSDSGQVARSVGEIKMIVFGAPGYLKARGMPKHPSE 183

Query: 186 LDKHNLITFGDLIP 199
           L +H+ I++  L P
Sbjct: 184 LVRHSCISWTSLGP 197


>gi|331651203|ref|ZP_08352228.1| LysR-family transcriptional regulator [Escherichia coli M718]
 gi|331050944|gb|EGI22996.1| LysR-family transcriptional regulator [Escherichia coli M718]
          Length = 311

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 137/279 (49%), Gaps = 17/279 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 19  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 79  ERIIACLEPRIDELEQELESLIQQNGTPSGNIRLSAGEHAARSLVWPKLKPFLRKYPEIS 138

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 139 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVL 237
            EL  H  I     +P     ++W    +R   E +   ++V+  L+       +   + 
Sbjct: 199 HELQNHRCINI--RLPTAGGLYHW--EFER---EGKALRVKVDGQLTCSPLPERIDAALS 251

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           G GIA +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 252 GFGIACVPEDMVQEYITSGRLIQVLQE-WCPTFPGYYLY 289


>gi|319781980|ref|YP_004141456.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167868|gb|ADV11406.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 297

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 146/304 (48%), Gaps = 19/304 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + ++L  F  V  +GSFT AAE+L ++++ +S+Q++ LE E+   L  R  R +  TE
Sbjct: 4   SINLNRLAYFATVVDAGSFTRAAERLGITKTVVSQQVARLEAELRTTLLVRTTRRVEPTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  LH     +   +E    E+ E++ + +G LR++ + D G  +L      F   +P 
Sbjct: 64  AGRLLHARCVLILRDVEEAVAEVGEANAEVAGVLRVSASNDYGAIVLAPIAARFRQRFPA 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L++ +  ID+  +  D +IR+   +  SS   R++ T      A+  +    R   
Sbjct: 124 CGVELVISDAIIDLIGNKIDLSIRV-GWLDDSSQQARRIGTFRQILVASRDFAAGIR--- 179

Query: 182 SIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYC 235
               +DK   ++   L+   +  + F W  T  R   EPR   L+    +NS  ++++  
Sbjct: 180 ----VDKPEDLSSLPLVANAVLRKPFTWNFT--RGDSEPRTITLREAFSINSTPAVLEAT 233

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G G+A+LPDY+V +      LV ++ D   PS  ++  YP A     K+  F + +  
Sbjct: 234 LAGGGLAVLPDYLVVNYLSQGRLVHVLPDWALPSGGIHVVYPAARFRPQKVTQFVSMLTE 293

Query: 293 KARD 296
             RD
Sbjct: 294 HIRD 297


>gi|221069509|ref|ZP_03545614.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220714532|gb|EED69900.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 293

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 20/289 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  +   GS   AA+ L LS +++S+Q+  LE ++G  L  R  R ++LT+ G   +
Sbjct: 7   LRAFRRIVELGSIARAADALDLSSAALSKQLRALEAQLGAVLIQRTTRRMSLTDTGRAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +  +  ++  S +  G+LR+   +    + L   L  F+  +P +Q+ L 
Sbjct: 67  AECCRLLDGFDMLEQSVRAQSGQVMGRLRVNAPLSFALSTLAPLLARFMQRHPLLQLDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D      D +IRL   +  SSLI R+L ++     A+P YL+    P S  EL 
Sbjct: 127 MEDRLVDAVGQGFDVSIRLSAELADSSLIARRLASLSQMLCASPAYLQQHGRPASTAELR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+ +             LA  D  +  P  +   VN+ L + +    G GI  LP +
Sbjct: 187 DHALLNYS------------LAQADDGLQVPSEARASVNNSLMLRELLEAGLGIGALPSF 234

Query: 248 IVKDNPNLVR------IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +  P + +       ++D   P   VY  YP       K++AF +F+
Sbjct: 235 LAR--PAIAQGQLEALSLQDWAEPPRHVYVVYPTQRHLLPKVRAFVDFL 281


>gi|295676164|ref|YP_003604688.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436007|gb|ADG15177.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 307

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 142/315 (45%), Gaps = 29/315 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALTRLEQKLDTALVRRTTRRLHLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    R    +   LE  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGDAFLRRARAILDALEEAEESVARGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L    + +D+     D AIR+   +Q S+L  R L    +   A+P YL    EP
Sbjct: 121 EIRLELTSTERIVDLLEQKVDIAIRI-GALQDSTLHARALGESRLRVLASPAYLAEHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIG----------EPRISCLQVNS 227
            ++  L  H LI F    P+ +  +   A      R  G          EP I+    +S
Sbjct: 180 TTLDALRAHRLIGF--TAPEHLNRWPLTAGGRRTKRANGQRDEAALLKIEPSITA---SS 234

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNT 280
             ++ Q  + G GIA L D++   +       P L  ++ D   P   VY+   ++    
Sbjct: 235 GETLRQLALSGWGIACLADFMTAADVREHRLVPILGNLLVDERQPVHAVYY---QSASLA 291

Query: 281 GKLKAFRNFIFLKAR 295
           G+++ F +FI  + +
Sbjct: 292 GRVQCFLDFIAARVK 306


>gi|261400530|ref|ZP_05986655.1| transcriptional regulator, LysR family [Neisseria lactamica ATCC
           23970]
 gi|269209792|gb|EEZ76247.1| transcriptional regulator, LysR family [Neisseria lactamica ATCC
           23970]
          Length = 303

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 20/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    +L+   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSLICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
                     +P  +  +     +D   +  G+         ++ ++ L + +    G+ 
Sbjct: 186 G---------LPAVLPTYTNQQKLDITRKSDGKKYRLELTPVIRTDNTLMMREMIKAGAC 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   P + V+ +    +LVR++ +  TP+  +   Y +    + K+++F +F+
Sbjct: 237 IGYQPFWAVEHDLRCGSLVRLLPEYATPTVRLNAVYADRAFLSAKVRSFIDFL 289


>gi|153008129|ref|YP_001369344.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560017|gb|ABS13515.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 300

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 126/276 (45%), Gaps = 7/276 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSF  AA +L ++ S++S  ++ LE  +G++L  R  R +  TE G +L    +    ++
Sbjct: 19  GSFRGAARELAIAPSAVSHAVATLEDSLGVRLLARTTRSVAPTEAGRQLLERLAPALEEI 78

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
                   +S  +PSG LRI       Q ++   L EF   YPDI + L ++N   DI  
Sbjct: 79  NAALGAAVDSRDRPSGVLRITAPYVAAQLVIAPRLGEFARAYPDITLDLRVENGFTDIVA 138

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
              D  +RL + +++  +  R    +     AAP+Y  N   P+  ++L +H  I     
Sbjct: 139 AGFDAGVRLGESLEADMIATRLTGNVRAAIVAAPNYFDNRSAPVEPRDLLQHACIRH--R 196

Query: 198 IPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKD---NP 253
            P     + W       + E  I   L VN    I++  + G+G+A L +  V D   N 
Sbjct: 197 FPSG-RTYRWEFEKAGEVQEIAIEGPLIVNDDRVILEAALNGTGLAYLFEAYVHDALANG 255

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LVR++ED   P   +Y  YP   +    L+AF +F
Sbjct: 256 RLVRVLEDWCQPFAGLYLYYPSRRQMRPALRAFIDF 291


>gi|89901310|ref|YP_523781.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89346047|gb|ABD70250.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 299

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 143/290 (49%), Gaps = 13/290 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  V  +GSF  AA+ L +S++++SR +  +ET +G++L +R  R L+LT++G   
Sbjct: 6   EMQTFNAVVDAGSFVKAADALGMSKAAVSRYVVDMETRLGVRLLHRTTRRLSLTDEGQIF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  + E+  +L   + E+   S   SG LRI      G   L      F + +P++++ +
Sbjct: 66  YVRSKELLAELAEAEDEITSRSDAASGLLRINAPFTFGVLHLAPLWGAFRVRHPNVKLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D AIR+   +++S+L+ ++L T  M   A+P YLK    P    EL
Sbjct: 126 TLADRLVDLVEEGYDVAIRIAN-LENSTLVSKRLATTRMVLCASPQYLKLHGTPKHPGEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIAL 243
             H +I++     K    F        P+G   +    C+  N+  +     +   GI L
Sbjct: 185 ADHAVISYSYWSTKDEWPFK------GPLGPVSVKTNPCIHTNNGDTCRAAALASQGIIL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P ++V D+     LV +M +  +    +Y  YP     + K++A  +F+
Sbjct: 239 QPSFLVGDDLASGALVELMPEFRSLELGIYAVYPSRKHVSPKVRALIDFL 288


>gi|148257375|ref|YP_001241960.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146409548|gb|ABQ38054.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 305

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 133/288 (46%), Gaps = 10/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L V   VA SGS + AA  L +S + +++ ++ LE  +G KLF+R  R LT+TE G +  
Sbjct: 8   LEVLSKVAGSGSLSGAARLLGMSPTMVTKHLAALEARLGAKLFHRTTRRLTITEAGRRYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   V    E  +  +    V+P G LR+   +  G   +   L  F  LYP + ++L 
Sbjct: 68  DLAERVLGDFEAAESAIAADRVEPRGLLRLNVPLAFGTRQIAPLLARFAALYPGVSVELG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D AIR+   ++ SSL+ R+L    M   AAP YL+    P    +L 
Sbjct: 128 LNDRLVDLIEEGWDLAIRI-GTLKDSSLVARRLAPCRMMICAAPSYLEAHGTPRRTADLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +            W       I       L+ N+  +++   + G G+   P +
Sbjct: 187 DHNCLGY---TLAAAGPSRWRMGGKTAIDVTVSGNLRANNGDALLAAALAGQGLIYQPTF 243

Query: 248 IVKDN---PNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFI 290
           IV D      LV +  DV  PS    V+  Y      + K++AF +++
Sbjct: 244 IVGDEVRAGRLVPLRLDV-PPSELLAVHAVYLPDRTPSAKVRAFIDYL 290


>gi|261251648|ref|ZP_05944222.1| transcriptional regulators LysR family [Vibrio orientalis CIP
           102891]
 gi|260938521|gb|EEX94509.1| transcriptional regulators LysR family [Vibrio orientalis CIP
           102891]
          Length = 318

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 101/183 (55%), Gaps = 1/183 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V + GSFT AA    +  SS+S+QI  LE+E+G++L  R  R  +LT  G +
Sbjct: 5   NQLSLFIDVVQQGSFTKAAALHDMDNSSLSKQIKKLESELGVQLLNRSTRSFSLTPAGEE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +   L   Q        +P G++RI     +G+N L+  + +F+  YPD++I+
Sbjct: 65  ILEQAHSIVGTLNHVQSIADSYHAQPKGRIRITAPYHVGRNHLRPVITQFMATYPDVEIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD+K  DI  D+ D A RL + +  SSLI +K+  I     A+  +++   EP + +E
Sbjct: 125 LLLDDKRSDIISDHFDVAFRLGR-LDDSSLIAKKIANIRPVLLASHSFIERYGEPKTPEE 183

Query: 186 LDK 188
           L K
Sbjct: 184 LAK 186


>gi|126734910|ref|ZP_01750656.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           CCS2]
 gi|126715465|gb|EBA12330.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           CCS2]
          Length = 298

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 130/284 (45%), Gaps = 8/284 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DW  ++ F  VA +GS + AA  L  SQ ++ RQI  +E ++G +LF+R  RG  LT+
Sbjct: 7   SLDWSLVQAFLAVAETGSLSAAARNLGTSQPTLGRQIKAIEAQLGAELFHRRPRGFALTQ 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L R    +   +    +       +  G +RI  ++      L   + +   L P 
Sbjct: 67  TGADLVRPAKTMRDAVRQIALTAAGQQARLEGTVRITASVATSAMHLPPIIAKIRKLEPQ 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L+  +   ++    AD A+R+ +P Q   LI + +  I +  +AA  YL     P 
Sbjct: 127 IAIELVPGDDTRNLLYREADIAVRMYRPTQ-LDLITQHIGEIPLGVFAARSYLAERGMPK 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            I +L  H+ + + D     +E F    T VDR   + R  C    +Y  +++    G G
Sbjct: 186 VIADLPNHDFVGY-DSNTAIIEGFAATGTKVDRDFFKTR--CDDNIAYWELVRA---GCG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           I      I + +P +  I   V  P+  ++    EA++ T +++
Sbjct: 240 IGFAQADIGRRDPQIAEIDLGVSMPTLPIWLTAHEAMRQTPRVR 283


>gi|121634228|ref|YP_974473.1| lysR family transcriptional regulator [Neisseria meningitidis
           FAM18]
 gi|254804320|ref|YP_003082541.1| putative LysR-family transcriptional regulator [Neisseria
           meningitidis alpha14]
 gi|304388393|ref|ZP_07370503.1| contact-regulated protein A [Neisseria meningitidis ATCC 13091]
 gi|120865934|emb|CAM09671.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis FAM18]
 gi|254667862|emb|CBA03919.1| putative LysR-family transcriptional regulator [Neisseria
           meningitidis alpha14]
 gi|254671007|emb|CBA07778.1| putative transcriptional regulator LYSR-type [Neisseria
           meningitidis alpha153]
 gi|254672415|emb|CBA05746.1| putative transcriptional regulator LYSR-type [Neisseria
           meningitidis alpha275]
 gi|304337625|gb|EFM03784.1| contact-regulated protein A [Neisseria meningitidis ATCC 13091]
 gi|308389955|gb|ADO32275.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis alpha710]
 gi|325131500|gb|EGC54207.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M6190]
 gi|325137546|gb|EGC60128.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis ES14902]
 gi|325141609|gb|EGC64073.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis 961-5945]
 gi|325197644|gb|ADY93100.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis G2136]
 gi|325204813|gb|ADZ00267.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M01-240355]
          Length = 299

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S +EL  H  + F +  P  +   N  A +D      +IS     S   I++  C+ G 
Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++V ++       P L     D   P   VY  Y +   N  +L+ F +F+
Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289


>gi|148258541|ref|YP_001243126.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410714|gb|ABQ39220.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 305

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 127/292 (43%), Gaps = 17/292 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DW  L  F  +AR G+ + AA  L +   +++R+++ LE    IKL  R AR  TLT
Sbjct: 22  MQIDWTDLHHFVTLAREGTLSAAARALGVDHVTVARRVAALERTTKIKLVDRRARTYTLT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    S + H     +  +  S    +G++ I+    L   ++   L E    +P
Sbjct: 82  EDGRRLAAAASPMEHAAFAIERAVVASRPGLTGEVSISAPPTLANRIIAPRLVELRRQHP 141

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I+LI + +   ++   AD A+RL +P     LI RK+       Y APHYLK     
Sbjct: 142 AIAIKLIGEKRIASLNRREADIALRLSRP-DEPGLIARKVGRFGFSLYGAPHYLK----- 195

Query: 181 LSIQELDKHNL--ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
               E  +H L  I + D          WL    + I   R   LQ     S       G
Sbjct: 196 ----ETPQHALGFIAY-DASMDSAPQQQWL----KAIAGRREIVLQTGDLESQAAAARAG 246

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA LP ++  ++P L+R  E        ++      L+++  ++A  +F+
Sbjct: 247 LGIAALPHFVGDNDPGLIRYDERQGGVGRDIWLVVHRDLRHSPLIRAVMDFL 298


>gi|127511757|ref|YP_001092954.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126637052|gb|ABO22695.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 301

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 142/296 (47%), Gaps = 17/296 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AAEQL LS+  +SR I  +E  +G++L +R  R ++L+ QG +  
Sbjct: 7   IRSFVEVASCGSFTQAAEQLGLSRLQVSRHIQEVERWLGLRLLHRTTRSVSLSVQGEEAF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++   Q   Q    +  G +RIA+ I LGQ LL   + +F   +P++++QL 
Sbjct: 67  IYCQKILDEVAALQNRAQRHRQELVGSIRIASPIGLGQALLFDAVDDFTREHPEVKVQLQ 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ + +  +  D A+R  ++P    SLI R+L+ I     A+P YL       S+ ++
Sbjct: 127 LSDEMVQLVDERVDIALRYTQQP--DESLIARRLMHIDSVLCASPDYLAGHEPITSLDDI 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN +              WL   D    E +IS  LQ N    +++  + G G+  LP
Sbjct: 185 TAHNCLLHAS-------QTRWLFVKDNQNIEKKISGNLQANDMGVLIKAAMRGKGLIHLP 237

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +   +     LV ++ +   P  T++  Y   L  + +    R+FI   A  W+
Sbjct: 238 CDLANAHLASGELVELLPEYHLPGKTLWAVY---LSRSYQQHLIRHFIDFLAERWQ 290


>gi|330939108|gb|EGH42539.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 298

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 136/285 (47%), Gaps = 9/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA + SFT A ++L +S S I + I  LE  +G++LF+R  R + LT +GS     
Sbjct: 9   VFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEGSIFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LE  ++EL  +   P G+LRI  ++ L   L+   + +F+  YPDI++ +   
Sbjct: 69  CRRILSELEAAEMELSNARDLPKGRLRI--SLPLVSGLVMPVIIDFMRTYPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P    +L +H
Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSKRMGSFQLRIVGAPDYFARHAIPRHPGDLSQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             +      P      +W    +  + +  +   +  N+   ++     G GIA LPD++
Sbjct: 186 ACLLHK--FPSTGRFEHWPPGREAGVDDLELPQAMVCNTTEILVDVARAGLGIACLPDFM 243

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     N  L+ +++D    + T    +P +   + +L+ F +F+
Sbjct: 244 ISSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288


>gi|167035415|ref|YP_001670646.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861903|gb|ABZ00311.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 302

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 136/298 (45%), Gaps = 16/298 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L  R  R L+LT  G +
Sbjct: 5   NAMRVFVTVVDLGSQSAAADHLQLSRPVVSRYLAELEDWVGARLMQRTTRKLSLTAAGQE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++       Q  +Q+    P G LRI+ +   GQ  L   +  ++  YP ++++
Sbjct: 65  TLPRCRQLLDLAGDLQAAVQQPEDAPKGALRISVSTSFGQAQLVDAVAAYVQRYPGVKVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  D AIR    +   +LI R+L        AAP YL     P  ++E
Sbjct: 125 LQMLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLSVCRSVVCAAPAYLHEHGTPQRVEE 183

Query: 186 LDKHNLIT---FGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L +HN +T   FG  +        W      + +  P    +  N  +++ +  + G+GI
Sbjct: 184 LSRHNCLTHAYFGHSL--------WHFEVAGQHVAVPVAGNISANEAMTLQKAALAGAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP Y   +      L+R++ +       +   Y         L++  +F+ L+ +D
Sbjct: 236 AMLPTYQAAEALRRGELIRLLPEARPRELNLNAVYTSRKHMPATLRSMLDFLVLRFKD 293


>gi|254252337|ref|ZP_04945655.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124894946|gb|EAY68826.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 356

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 3/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R + LT+ G +  
Sbjct: 59  IELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRYF 118

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   + E       P+G LRI+     G   +   L  F   YPD++++  
Sbjct: 119 EQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAFRERYPDVRVETH 178

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID + +  D AIR R P   SSL+ RKL    +   AAP YLK    P ++ +L 
Sbjct: 179 LSNRNIDFAEEGFDLAIRGRAPAD-SSLVARKLEDAELVVVAAPGYLKRAGTPTAVGDLH 237

Query: 188 KHNLITFGDLIPKCMEDFNWL 208
            H  I F   +P       WL
Sbjct: 238 AHECIQF--ELPSSGRPIPWL 256


>gi|153216986|ref|ZP_01950750.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124113993|gb|EAY32813.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
          Length = 309

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  V ++L  R  R ++LT +G
Sbjct: 17  ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLTTEG 76

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP + 
Sbjct: 77  DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYPKVN 136

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N     +I
Sbjct: 137 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPINTI 195

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L++H+ +    L +P           V   +     S    NS L +M     G G+ 
Sbjct: 196 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 253

Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  +++   P+  LVR+  D    S T+   YP       +++ F +++
Sbjct: 254 SIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 303


>gi|78067785|ref|YP_370554.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968530|gb|ABB09910.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 320

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 14/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + +
Sbjct: 66  YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDM 125

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +
Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPATIAD 185

Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  HN +   +   ++   + D    + V+          L VN    +    + G+GIA
Sbjct: 186 LAHHNYLRRDSNSTMLDSLVIDAAAASRVNLN------GNLIVNHLEGLRAAVLAGAGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LL   +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 240 LLGTEVVGDDIESGRLVPVLLDAVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|307825003|ref|ZP_07655225.1| transcriptional regulator, LysR family [Methylobacter tundripaludum
           SV96]
 gi|307734050|gb|EFO04905.1| transcriptional regulator, LysR family [Methylobacter tundripaludum
           SV96]
          Length = 304

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VA++GSF   A  L +S++  ++ I  LE  +G +LF R  R L+LT+ G+   
Sbjct: 7   MNVFVRVAKAGSFAGGARDLDISRAMATKHIMHLEGVLGTRLFNRTTRSLSLTDVGASYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V  ++E  +  +     +P G LRI+    +G   +   + EFL ++ D+ I++I
Sbjct: 67  ERCQQVLLEVEEMEAAVTHLQTEPRGVLRISAPPVIGSTHIAHAVSEFLKIHSDLTIEMI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+  +  D AI L   +  +S+  RKL +  +    +P Y +    P + ++L+
Sbjct: 127 IQSSPGDLIDEGIDVAIFL-GALDDTSMFARKLASSSLVVCGSPDYFEQYGIPETPEDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            H+ +    + P+      WL   +       +S  +Q N    I    + G G+ +LP 
Sbjct: 186 NHSCLVNWAIAPRN----KWLFKGEAGYTGINVSGRMQANVADPIRIAAISGLGLVMLPT 241

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           YIV    +   L  ++ED  +P   V+  YP     + K+++F +F+
Sbjct: 242 YIVGRDIEKGRLKVVLEDYTSPPLDVHAVYPHRKYLSAKVRSFMDFL 288


>gi|262278580|ref|ZP_06056365.1| regulatory protein [Acinetobacter calcoaceticus RUH2202]
 gi|262258931|gb|EEY77664.1| regulatory protein [Acinetobacter calcoaceticus RUH2202]
          Length = 295

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 145/284 (51%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +A +GS   A   L +S S++ + +  LE ++G++LF+R+ R + LT +G      
Sbjct: 9   VFVKIAETGSIVAAGRSLGISASAVGKSLIRLEEKIGVRLFHRNTRSINLTAEGILFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  ++EL ++   P G+LR+  ++ L  +L+   L +F+  YP+I++ L   
Sbjct: 69  SRRILAEIEAAEMELSQAIKSPQGRLRV--SLPLVSSLVLPILGDFMQEYPEIELDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R   P   S L   KL T      A+P YL     P    +L KH
Sbjct: 127 DRLVDVIEEGFDAVVRTGIP-TDSRLKASKLGTFRQLLVASPAYLLQRGRPTVPADLLKH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + +       +E +    T + P  +  IS +  N+  + + + + G GIA LPD+ +
Sbjct: 186 SCLHYRFSHSGKLEKWPLKTTENEPELQLPISMI-CNNIETRVCFALKGRGIACLPDFSI 244

Query: 250 KD--NPN-LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           K+  N N LV+++ + +  +      +P +   + K++AF NF+
Sbjct: 245 KELLNTNQLVQVLPEFVDRTGVFNILWPASKHPSPKVRAFVNFL 288


>gi|162448434|ref|YP_001610801.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161159016|emb|CAN90321.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 322

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 5/289 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F +V   GS T AA  L  ++ S+SR+I+ LE  +G++L  R  R +  TE G    
Sbjct: 18  LRAFCLVVDLGSITAAARTLGETKGSVSRRITRLEHALGVELLRRSPRLVQATEDGLAYR 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE   + +Q++  +P G LR+    DLG ++L      F   +P+I ++L+
Sbjct: 78  MRVGRALELLEDANVAVQQARSRPRGHLRVTAPFDLGLSILAPLSAGFAERFPEISLELL 137

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L    +D      D A+R    +  SSLI  KL  I +  +AAP YL+        ++L+
Sbjct: 138 LTEALLDFDAHQVDVALRATSSLPDSSLIAHKLQHIEVGLFAAPSYLRKHGAVRRPEDLE 197

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H L+             +  A   R   E R+ + +  + +    +  + G GIAL+P 
Sbjct: 198 GHRLLLAQTARGHATIALSARARDGRDRAELRVRAAISASDFSFCREVALAGGGIALVPA 257

Query: 247 YIVK---DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             V+   D   LV +++D  I  + ++Y  +P       K++AFR+++ 
Sbjct: 258 INVRGDLDAKRLVPVLKDYAIHGAASLYLVHPGTRFLPSKIRAFRDYLL 306


>gi|116694912|ref|YP_729123.1| transcriptional regulator [Ralstonia eutropha H16]
 gi|113529411|emb|CAJ95758.1| transcriptional regulator [Ralstonia eutropha H16]
          Length = 307

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 134/304 (44%), Gaps = 12/304 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W ++  F  VA  GS T AAEQL +S ++ +R ++ LE  +G +L  R  R L LT+ G 
Sbjct: 4   WTQIEFFVQVAELGSLTKAAEQLGMSSAAATRCLNALEERLGARLVERTTRRLWLTDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + HR  + +  ++   +  + E+++ P+G LR+  +       L   L  F   YP++ +
Sbjct: 64  EYHRRCAAMLAEMAEAEAAINEATLNPTGVLRVTASASFAMIHLAPALPAFRACYPNLAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+I  N+  D      D AIR R+    S +  RKL        A+P YL     P +  
Sbjct: 124 QIIAANRYPDFIEAGIDVAIRTREHEGDSGITVRKLAETRRVLAASPGYLAERGMPDAPD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H ++ +       +  F      D     P  S L  N    I    + G GI + 
Sbjct: 184 ALRQHQMLIYNLANDPYLLHFR---RGDETATVPVTSVLDSNEGQVIRAAALAGHGILVQ 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK------AR 295
           P YI+ ++     LV ++ D   P  T+   Y        +++ F +F+F +      AR
Sbjct: 241 PLYIIYEDIVAGRLVPVLPDWQLPKLTINVAYQCRRHQPARIRVFIDFLFERFERLGLAR 300

Query: 296 DWKF 299
            W+ 
Sbjct: 301 KWEM 304


>gi|110681268|ref|YP_684275.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109457384|gb|ABG33589.1| transcriptional regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 309

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 123/257 (47%), Gaps = 7/257 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   GS + A   L +S +  S +IS LE  + ++LF R  R LT TEQG  
Sbjct: 5   DNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEDHLSVRLFQRTTRSLTPTEQGKA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+   +E  + ++ + +  P G L IA  + LG+ L+   +  FL  YP++ I+
Sbjct: 65  FYGGACEILSSVENAEAQVVDITENPKGALYIAAPLGLGRRLIAPQVPAFLAAYPEVSIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A  L +P  S+  I RK+  +     AAP Y+     P+S  E
Sbjct: 125 LRLTDRKVDLTTEGLDLAFFLGQPADSTLRI-RKIADVPRVLCAAPSYIAARGNPMSGDE 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           L  D+H  +      P   E F W       + + R++   + +    +  + + G GI 
Sbjct: 184 LVADRHECLNL--RFPGATE-FQWRLRTAEGLKKFRVTGRYESDDGDVLTDWALAGHGIT 240

Query: 243 LLPDYIVKDNPNLVRIM 259
           L P + + D+    R++
Sbjct: 241 LKPVFEISDHLKAGRLV 257


>gi|238025089|ref|YP_002909321.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879754|gb|ACR32086.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 302

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 136/288 (47%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F     +GSFT AA++L LS+  +SR+++ LE  + ++L  R+ R L +TE G  
Sbjct: 4   DDLRIFIATVEAGSFTGAADKLLLSKQFVSRRMAALEAALRVRLLNRNTRKLAVTESGQT 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++   +  +     +  G L+I+  +  G + L   + EFL  +P +++ 
Sbjct: 64  FYTHAQRILAEVAQAEEAMSARHTELHGSLKISAPMSFGISHLSPLIAEFLAAHPAVRLD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D A+R+   +  S+L+ R L T+ M A  +P Y +   EP +  +
Sbjct: 124 VELSDRRVDLIGEGFDLALRI-GALADSTLVARTLGTLRMIACCSPAYRRLHGEPATPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + +G    + + D     T D          L  N+   +    + G GIALLP
Sbjct: 183 LHGHACLLYG----QELRDGWEFDTADGRRAYDVQGPLLANNGDVVRDAAIAGLGIALLP 238

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +IV        LV I+    +P   +   YP+  + +  ++    F+
Sbjct: 239 QFIVGPALARGELVAILGAHASPPLRLSAVYPQHRQGSTAIRTLLAFL 286


>gi|229592568|ref|YP_002874687.1| LysR family regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229364434|emb|CAY52245.1| LysR-family regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 298

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 13/263 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L++F  V   GS + AAEQ+  + S++SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQIFVSVIECGSISAAAEQVGQTPSAVSRTLSRLEAKLDTTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  ++E  +  L     KP+G+LRI   +    + +   + EF  LYP
Sbjct: 61  EEGKYFFEQAKVILVQMEALEERLSSRQKKPAGRLRINAAVPFMLHGIVPYIAEFRSLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L  D+  ID+     D AIR+   +  S+L  R L +  +H  A+P YLK    P
Sbjct: 121 EILLELNSDDLIIDLLEQSTDIAIRI-GALADSTLHARALGSTPLHILASPEYLKQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATV--DRPIGEPRISCLQVNSYLSIMQYCV 236
            ++ EL  H L+ F        E  N W L  V  DR + +PR++    +S  ++ Q  +
Sbjct: 180 TTVAELAGHTLLGFTQ-----TETLNHWPLRHVEGDRWLIQPRVAA---SSGETVRQLAL 231

Query: 237 LGSGIALLPDYIVKDNPNLVRIM 259
            G GI  L +++  D+ +  R++
Sbjct: 232 EGQGICCLSNFMTVDDIDAGRLV 254


>gi|329113272|ref|ZP_08242055.1| Putative HTH-type transcriptional regulator LtrA [Acetobacter
           pomorum DM001]
 gi|326697413|gb|EGE49071.1| Putative HTH-type transcriptional regulator LtrA [Acetobacter
           pomorum DM001]
          Length = 324

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 127/266 (47%), Gaps = 8/266 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSF+  + +  +SQ +ISR I+ LE   G  LF R  R LT+TE G  L 
Sbjct: 27  LHSFVRVAATGSFSAVSRETGVSQPTISRHIALLEAHYGTTLFARTTRSLTMTEDGRSLL 86

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV   LET +  L       SG +R+  T   G  L +  + E L  +PD+ I+++
Sbjct: 87  PHAYEVLEILETAETVLGRRRASVSGLVRLGVTTAFGLCLTR-RIGELLERHPDLAIEVV 145

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+  +  D A+R+   I   SLI RKL  +     AAP  L  C  P+  ++L 
Sbjct: 146 MRDAFGDLVEEGLDLAVRV-GDIAEGSLIARKLGVVRKWLVAAPSCLARCGTPMHPRDLP 204

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           ++  + +     +   D+N+    +  +  P  +  + NS  +++     G GI LLP++
Sbjct: 205 EYPGVVYNYGSSRL--DWNFERDGEESVIAPS-AVFRANSSEAVLYAVESGLGIGLLPEF 261

Query: 248 IVKD---NPNLVRIMEDVITPSFTVY 270
            V++   +  L R+  D   PS   Y
Sbjct: 262 QVREAVADGRLTRLFADWNIPSLPFY 287


>gi|293609442|ref|ZP_06691744.1| regulatory protein [Acinetobacter sp. SH024]
 gi|292827894|gb|EFF86257.1| regulatory protein [Acinetobacter sp. SH024]
          Length = 300

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 4/197 (2%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA   S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADIEVFLIVAEKLSISAAAIYLATTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERAIQGKQLQISGKIKLSVPTTYGHYRLPELLQKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR +  + SS+LI R L    +   A+P YLK  
Sbjct: 121 QYPDIQIEVSISNRNVDLIAEGFDLAIR-QGQLPSSTLIARPLELAPLQLVASPEYLKRM 179

Query: 178 REPLSIQELDKHNLITF 194
             P ++++L+ H  I F
Sbjct: 180 GVPQTLEDLNHHQCIAF 196


>gi|316935119|ref|YP_004110101.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315602833|gb|ADU45368.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           DX-1]
          Length = 305

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 134/298 (44%), Gaps = 10/298 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA    F  AA +L +S S+++R ++ LE  +G +L  R  R + LT+ G++
Sbjct: 5   DTMSAFVAVAELQGFAPAARKLGMSPSAVTRLVAALEQRLGTRLLQRTTRSVALTDTGAR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   LE          V PSG+L ++  +  G+  +   L ++L  YP +  +
Sbjct: 65  YLERVRRILADLEEADASAAAERVTPSGRLVVSAPVGFGRRYVAPLLSDYLRRYPQVTGE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  I++  D  DCA+R+   +  SSL+ R+L  +     A+P YL     P +  E
Sbjct: 125 LRLSDLMINLVEDGVDCAVRIGH-LSDSSLVARQLGAMRRIVVASPDYLAARGVPATPAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +  H+++ FG    +     +W   VD R +  P +  L  N     +     G G+A +
Sbjct: 184 IAAHDVVHFG----QTGAPVDWRFVVDGRDVRVPCVPRLVSNVADVAILDAERGGGLARV 239

Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             Y   D     R   ++ D   P   +   YP A   + K++AF +     A DW+F
Sbjct: 240 LAYQAADAIAAGRLQIVLADYEVPPLPIAMVYPTARLLSAKVRAFIDLAVETA-DWQF 296


>gi|237808396|ref|YP_002892836.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500657|gb|ACQ93250.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 300

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 137/289 (47%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F      GSF+ AA+ L +S   + + +  LE  +G++L  R  R   LTE G+  +
Sbjct: 7   MTMFVKAVELGSFSAAADALQMSPQLVGKNVRMLEQHLGVRLLNRTTRSQHLTEIGATFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  +    ++ + P GKLRI  ++  G + L   + E++ LYP++ ++L 
Sbjct: 67  ERARNILAEMEIAEGLAAQTRIVPKGKLRINASVTFGVHALTPKIAEYMQLYPEVSVELC 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ ID+  +  D   R+ + +  S LI R+L    +   A+P Y++     L+  +L 
Sbjct: 127 LSNRYIDLIDEGFDAIFRIGE-LSDSGLIARQLRPYRLILCASPRYMETHEPLLTPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
           +H  + F         +     T D P G   +     L  +S  +I+   + G+GI L 
Sbjct: 186 RHECLGFSH------TELRTTWTFDGPDGHKTVQVKGRLMSDSGEAIVCAGLCGAGIMLQ 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V     +  LV I+ +   P+  ++  +    + T KL++F +FI
Sbjct: 240 PSELVTPYLQSGQLVEILPEYKAPTRPMHLVHTPDRRMTPKLRSFVDFI 288


>gi|83646889|ref|YP_435324.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634932|gb|ABC30899.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 300

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 143/303 (47%), Gaps = 23/303 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V ++ SF+  A    +  SS++RQI  LE E+G +L +R  R + LTE G    
Sbjct: 7   LRFFEHVGKAASFSDTARHFDIPVSSVTRQIQALEEELGARLLHRTTRVVKLTEIGEIYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S++   L+     +     +PSG LRI+ +   G++ +   L EF  LYP+I I + 
Sbjct: 67  QHCSQILRSLDNADELIVNYRSRPSGVLRISCSSSYGESRILPILSEFEALYPEIIIDID 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +K +DI  D  D A+R  + I    ++ + +   +    A+  YL+    PL I++L 
Sbjct: 127 LTDKVVDIMRDSVDIAVRAGQ-IPDERVVAKHIDDNNFSLAASDAYLQRYGTPLRIEDLS 185

Query: 188 KHNLITF--GDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I F   D +     + N  W     RP        L  +S   + Q+   G G+A+
Sbjct: 186 EHRAIFFRTSDQVLHWQANINGRWRQVDIRP-------ALITSSPRLLRQWAGEGKGLAM 238

Query: 244 LPDYIVKDN--PNLVRIMEDVITPSFT-------VYFCYPEALKNTGKLKAFRNFIFLK- 293
           +P+++ + N  P   RI+E +  P +        +Y  Y        K+KA  +F+  + 
Sbjct: 239 MPNWVWRSNSLPAGFRILE-LDYPLYVSRATQLGIYLLYQRPKYAVPKVKAAVDFLVSRL 297

Query: 294 ARD 296
           ARD
Sbjct: 298 ARD 300


>gi|33598291|ref|NP_885934.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33566849|emb|CAE39064.1| LysR-family transcriptional regulator [Bordetella parapertussis]
          Length = 307

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 142/301 (47%), Gaps = 18/301 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ A+  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLYYFAQVVEQGGFSAASRVLDIPKSRLSRRISQLEDRLGVRLLQRTTRRLRLTTAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+       +  +++   +P+G + ++  + + Q +L   L EFL  +P + 
Sbjct: 63  ERYLHYCQEMTASARAAEDAMRQLQSEPAGPVVVSCPVSIAQQMLAPLLPEFLDAWPSVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++ N+ +D+  +  D A+R+R  + + + L+ + L        A+P YL+    P +
Sbjct: 123 VQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHLGIASGTLVASPAYLQRHGTPET 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
            QEL  H  ++F D       +  W  T  R  GE     +Q     N ++ + Q  V G
Sbjct: 183 PQELASHRTLSFND----PQNEVRWPLTNQR--GESVDVAVQPVLASNDFIVLTQAAVRG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294
            GIALLP    +       LVR++ D  +P   V+  YP      G + A R F+ FL  
Sbjct: 237 RGIALLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYP---SRRGMMPAVRAFLDFLAK 293

Query: 295 R 295
           R
Sbjct: 294 R 294


>gi|330818511|ref|YP_004362216.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
 gi|327370904|gb|AEA62260.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
          Length = 318

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 148/293 (50%), Gaps = 20/293 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE  +G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQTLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +S+ P G+LR+ +    G   +   + ++   Y D+ +++
Sbjct: 66  YERLVQALTELDEAGQAVGAASIVPQGRLRVTSLSAFGLRHVMNAVTDYAARYADVTVEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P ++ +
Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPFGLKSSSLVARQIATAHILLVASPAYLEEHGTPATLAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL-GSGI 241
           L++HN +           D    +++D    + R++    L VN +L  ++  VL GSGI
Sbjct: 186 LEQHNYLR---------RDAGS-SSIDAQAFDSRVTLSGNLIVN-HLEALRVAVLSGSGI 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           A+L   +V D+     LV ++ DV+ P    +Y  Y      + K+++F +F+
Sbjct: 235 AMLGTEVVGDDIEAGRLVPLLLDVMPPRELPIYAVYASRRHVSAKVRSFVDFL 287


>gi|238023516|ref|YP_002907748.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878181|gb|ACR30513.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 303

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 151/313 (48%), Gaps = 43/313 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF VV R  SF+ AAE+L +S + +S++++ LE ++G +L +R  R + +T+ G +
Sbjct: 8   DDLRVFSVVVRLTSFSAAAERLGVSPAYVSKRVALLEAQLGARLLHRSTRRVAVTDSGER 67

Query: 66  L----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +     ++  +V H +E    ++  +   P G LRI+++   G+++L   L +F   Y  
Sbjct: 68  VVAWAEKILDDVDHLVE----DVSTTRTVPRGTLRISSSFGFGRHVLAPALLDFNARYAQ 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L ++ +D++ +  D  +R+   I +  LI R+L   H    A+P YL     P 
Sbjct: 124 IDVRLDLFDRLVDVAGEGFDLDVRIGDEI-AEHLIARRLAANHRVLCASPDYLAAHGTPR 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI---- 231
            I +L  H          +C+     +   D P G  R+      + ++V   LS     
Sbjct: 183 QIADLAAH----------QCLA----IKERDHPFGVWRLTQRGETTSVKVGGALSTNHGE 228

Query: 232 --MQYCVLGSGIALLPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLK 284
             +Q+ + G GI L    I +  P L      R++ DV+ P+  V+  YP  L  + K++
Sbjct: 229 VAVQWALAGRGIVL--RSIWEAGPLLASGALKRVLPDVMQPA-NVWAVYPARLAASAKVR 285

Query: 285 AFRNFIFLKARDW 297
              +F+      W
Sbjct: 286 VCVDFLAQAFAQW 298


>gi|91778871|ref|YP_554079.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691531|gb|ABE34729.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 312

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 143/291 (49%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +A + SF  AA  L +S +  +R +  LE  +  +L  R+ R L+LTE+G    
Sbjct: 7   MRVFINIADTMSFGQAAANLGISNAMATRYLEQLEAHLNTRLVNRNTRSLSLTEEGEIYS 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V  ++E  +      + +PSG LRIA       + L   L+E+L  YP++++ + 
Sbjct: 67  KGCRNVLDEIEEIETIAIRGTTEPSGTLRIAAGASFSLSSLTPLLQEYLRQYPNVRLSVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  D  I L K I  ++LI+R L+++   A A+P YL     P    +L 
Sbjct: 127 LLHQHVDFVKEGFDVGIVLPKQISGTTLIKRSLLSVRPIAVASPSYLAIKGVPSRPADLT 186

Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIAL 243
            H  +     +     D +W+ A  DR   E R++    L VN+ L + Q  + G GIA+
Sbjct: 187 SHTFLA----LTAASHDGDWIFAAPDRR--EKRVTLDAALMVNNALMLRQAALAGMGIAV 240

Query: 244 LPD-YIVKD--NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LP+ +++ D     L++++ D  +      +   Y +    + K ++F +F
Sbjct: 241 LPENHVLTDLRGGTLMQVLTDFRITNADKELTLVYADRRHISAKTRSFVDF 291


>gi|153826387|ref|ZP_01979054.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|149739865|gb|EDM54056.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
          Length = 309

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  V ++L  R  R ++LT +G
Sbjct: 17  ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLTTEG 76

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP + 
Sbjct: 77  DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYPKVN 136

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N     +I
Sbjct: 137 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENSPPIHTI 195

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L++H+ +    L +P           V   +     S    NS L +M     G G+ 
Sbjct: 196 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 253

Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  +++   P+  LVR+  D    S T+   YP       +++ F +++
Sbjct: 254 SIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 303


>gi|198244448|ref|YP_002216879.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197938964|gb|ACH76297.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326624642|gb|EGE30987.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 303

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 147/297 (49%), Gaps = 25/297 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPL-S 182
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+ S
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCV 236
           ++ L +   I    L P  +    W  TV    G+       +   + V+S  S+M + +
Sbjct: 180 LESLAQAEWIIHKRL-PTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFAL 233

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GSG+ALLP ++V    +   L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 234 AGSGVALLPQWLVNTALEEGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|330877683|gb|EGH11832.1| LysR protein [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 305

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 138/294 (46%), Gaps = 17/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  +GSFT AA  +H+S++S+++ +  LE  + ++L  R  R + +T  G+  +
Sbjct: 1   MQAFARVVETGSFTKAAGTMHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGAVYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +  L  ++  P G+LR+     L   LL   +  F   YPDIQI + 
Sbjct: 61  ERVVRLLADMDDAETSLSSAASLPRGRLRVDVPSPLASMLLMPAMPAFHARYPDIQIDMG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC +R  + I   SL+ R +  + +  YAAP YL+    P    +L+
Sbjct: 121 VSDRIVDLIGENVDCVVRGGE-ITDQSLMARHVGDLQLGVYAAPGYLQRMGTPAHPLDLE 179

Query: 188 K--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              H ++ +     G  +P  M        V    G   ++    N+Y++     + G G
Sbjct: 180 NSSHRIVGYLWARTGKALPYAMHRDGEQVRVQ---GRYTLTVDDGNAYIAA---GLAGMG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           I  LPDY+ +      +LV + +D    S  +Y  +P     + K++ F +++ 
Sbjct: 234 ILWLPDYMARPYLARGDLVPLFQDWQLDSMPMYVAFPPNRHVSIKVRVFIDWVI 287


>gi|327395663|dbj|BAK13085.1| HTH-type transcriptional regulator PtxR [Pantoea ananatis AJ13355]
          Length = 310

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 20/296 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +  SGS + AA QL ++Q +ISR++  LE  +G+KL  R    L LT+ G + +
Sbjct: 13  MHTFIRIVESGSLSAAALQLGITQPTISRRLQSLEQGLGLKLILRTTHALKLTDDGERCY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++       + EL  +   P G LR+      GQ+ L   L  F+  YP ++I+ +
Sbjct: 73  AQARQLLATWHALEDELTGAGSDPVGILRVRAPHAFGQDQLVTPLVNFMRRYPRLRIEWM 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++  D   +  DCAI++   +   S++   L  +     AAP  L+        Q   
Sbjct: 133 LNDRTPDFVAENVDCAIQVGA-LTDPSVVAVLLAEVPRIVVAAPALLQ--------QYPP 183

Query: 188 KHNLITFGDLIPKCMEDF--NWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGI 241
            + +   GDL    +  F  N +A   +  GEP     +  L  +S  ++ +  + G G 
Sbjct: 184 INQVAQLGDLPWLALTSFYRNEIALQHKDKGEPMNLPIVPLLSSDSLFAVRKAALAGLGT 243

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L  ++++++    NL+++M +   P   V+  YP A     +L AF  F  +KA
Sbjct: 244 AILSTWVIQEDLAQGNLIQLMPEWQAPPLPVWLTYPWASYYPARLTAF--FAMIKA 297


>gi|115358090|ref|YP_775228.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283378|gb|ABI88894.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 302

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 135/273 (49%), Gaps = 14/273 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   A+S SFT AAEQL L++S++ + I+ LE  +G +LF+R  R ++LT  G      
Sbjct: 12  IFVTAAKSRSFTDAAEQLGLTKSAVGKAIAKLEDRLGAQLFHRTTRSISLTADGEAYFAA 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +    ++ T +  +   + +P G+LRI      G+ +L   L +    +PD+Q  +   
Sbjct: 72  CTSALDEIATAETAIGPGNQRPVGRLRIDMPAAFGRRILVPILLDIGRKHPDLQFTMTFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID   +  D  IR  +   S+ LI R+L    M   A+P YL     P +++ L+ H
Sbjct: 132 DHLIDPIEEGVDLVIRFGELQSSAGLIARRLTRQRMLIAASPDYLSRRGTPGNLEALEHH 191

Query: 190 N-LITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + ++ +   +P      +W   ++   + I  P     Q++   SI+Q  + G G+  +P
Sbjct: 192 SCVVGYRRGLP-----LSWRVKINGQAQRISPP--GTHQISDGDSIVQAALAGMGLCQMP 244

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
             +++   D+  L+ ++EDV +    V+  +P+
Sbjct: 245 MSLLRPYLDSGALLPVLEDVSSELIDVHAVWPK 277


>gi|332850266|ref|ZP_08432614.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332871233|ref|ZP_08439802.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332730841|gb|EGJ62150.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332731642|gb|EGJ62926.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 300

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 13/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I +QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EILLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237
             S  EL  H +++  +   + ++    L   D  + + ++S   +  N Y+ + Q    
Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYM-LAQLASQ 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GIALLPD   +D   +  LV+I+ D        +  YP      G L A R FI
Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289


>gi|261393197|emb|CAX50816.1| HTH-type transcriptional regulator CrgA [Neisseria meningitidis
           8013]
          Length = 299

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S +EL  H  + F +  P  +   N  A +D      +IS     S   I++  C+ G 
Sbjct: 180 QSAEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++V ++       P L     D   P   VY  Y +   N  +L+ F +F+
Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289


>gi|260914028|ref|ZP_05920501.1| LysR family transcriptional regulator [Pasteurella dagmatis ATCC
           43325]
 gi|260631661|gb|EEX49839.1| LysR family transcriptional regulator [Pasteurella dagmatis ATCC
           43325]
          Length = 296

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 138/288 (47%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  V  + SFT AA Q ++S +  S+ ++ LE ++  +L  R  R ++ TE G  
Sbjct: 5   NAISVFCKVIETQSFTQAAAQQNISVAMASKLVAQLEEQLKTRLLQRTTRKISPTEAGLV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  +LE  +  +   +    G L I+   D G   +  NL  F+  +P++ I 
Sbjct: 65  YYQRCLPILVELEEAESSISSLATALQGNLTISVPRDFGLLFITPNLASFIKAHPNLHID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +++ +D+  +  D A+R+   +Q SSL+ +K+ T  MH  A+P YL+    P + +E
Sbjct: 125 ISFNDRMMDLISEGYDLALRIGH-LQDSSLVAKKIATASMHVVASPEYLEKNGTPQTPEE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KH+ + +     +   +F     + R   + R+ C   N+ +++M+    G GI   P
Sbjct: 184 LHKHHCLLYKARGNQIYWEFQQKKQLCRVKMQSRMVC---NNGMTLMEIAKTGLGIINTP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + +++   N  LV I+ D       +   YP       K KAF  F+
Sbjct: 241 SFFIQEALKNGELVEILADYEQQPLDINVVYPHRRHLPAKTKAFIEFL 288


>gi|206580000|ref|YP_002240989.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569058|gb|ACI10834.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 315

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 10/299 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           FD+   + VF  VA  GSFT  A  L  + S +SR ++ LET +G +L  R  R ++LTE
Sbjct: 5   FDYLADVEVFLAVAERGSFTAGAVALSSTPSVLSRAVTRLETRLGCQLLRRSTRRISLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS       + +  L+  + E Q      SG+++++     G   L   L  +  L+PD
Sbjct: 65  AGSAYLSQVRQAFEVLDNAERETQGQKGALSGRVKLSAPTTWGHYRLPARLALYRQLHPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L + N+++DI  +  D  +R +  +  S L+ +KL    +   A+P YL++   PL
Sbjct: 125 VQIELNITNRNVDIIAEGFDLVVR-QGHLPDSGLVAKKLEDAALCLVASPAYLRSTARPL 183

Query: 182 S-IQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQV-NSYLSIMQYCVLG 238
           S I +L  H+ +TF  ++P   +   W+   D R I     S L V +  L ++   + G
Sbjct: 184 SKIADLRHHSCLTF--IMPATGKVAEWVFREDGRDISWLPTSSLHVSDDVLGVVSLALQG 241

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +GI     +IV++      LV ++      S      YP     +   +A    + + A
Sbjct: 242 AGICQSYAFIVQEAIARGELVPVLPAFAGRSRPFSVLYPPHRSQSAAARALITLLTMPA 300


>gi|167644617|ref|YP_001682280.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347047|gb|ABZ69782.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 301

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 126/283 (44%), Gaps = 7/283 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW   R F  V   GS + AA  L L+Q ++ RQ++ LE  +G+ LF R  +GL  T+  
Sbjct: 9   DWSLYRAFLAVLTEGSLSAAARTLGLTQPTLGRQVAELERALGVALFTRSPQGLKPTDAA 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +             +     G +RI  +  +G  +L   L +F  L+P + 
Sbjct: 69  LDLAPHAKAMAGAASAMARAASGAGNTARGVVRITASEIIGAEVLPQILADFRPLHPGVV 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L LDN+  D+    AD A+R+ +P Q  +L+ R+L   H+  YA   Y++    P ++
Sbjct: 129 VELSLDNQQQDLLRGAADIAVRMVRPTQ-DALVARRLADTHLGLYAHRRYVEANGAPATL 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H ++ F    P           V R    P+    + +S L+ +     G GI  
Sbjct: 188 DDLRDHAIVGFDRGTPFLR------GLVQRVPLPPQGFAFRADSDLAQLAAVRAGFGIGF 241

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +   I + +P+L+ +    I     V+    E L+ T +++A 
Sbjct: 242 IQHGIARRDPDLIPLCPGQIGFDLPVWLVMHEDLRATPRMRAM 284


>gi|317403802|gb|EFV84281.1| LysR family regulatory protein [Achromobacter xylosoxidans C54]
          Length = 302

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 136/290 (46%), Gaps = 13/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++ RVF  VA  GSF  AA  L L ++S+S  +  LE ++G +L +R  R + LT  G+
Sbjct: 4   FEQYRVFAQVAEMGSFIKAANALELPRASVSAAVQQLEAQLGARLLHRTTRQVRLTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +  ++E      Q+S  + SG+L +     + + L+   L   L  +P +Q+
Sbjct: 64  QLLERLRPLLSEVEDIDHLFQQSQRQVSGRLNVDVPSRIARRLVAPALPGLLRRHPRLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+  +  DCA+R+   +  SSL+ R L  I +   A+P YL++   P +  
Sbjct: 124 ALGSSDRAIDLIQEGVDCAVRV-GALHDSSLVSRPLGNIGLVNCASPAYLRDQGVPHAPD 182

Query: 185 ELDK-HNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGS 239
           EL   H ++ +    P    +  W    D    R I  P  S + VN+  S +  C+ G 
Sbjct: 183 ELPAGHWMVGYAS--PTTGRELPWEVVADDGGRRLIAVP--SRVVVNNAESYIACCLAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+  +P + V+D      LV +M         V   YP   + + +L  F
Sbjct: 239 GLIQIPRFDVQDLLEAGELVEVMPAHRAAPMPVALLYPHRRQRSRRLAVF 288


>gi|222109112|ref|YP_002551378.1| LysR family transcriptional regulator [Agrobacterium radiobacter
           K84]
 gi|221728034|gb|ACM31084.1| LysR family transcriptional regulator [Agrobacterium radiobacter
           K84]
          Length = 341

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  LR F ++  SGSF  AA  L ++ S++S  I  LE  +G KL  R  R + LTE G
Sbjct: 26  DFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRLTEAG 85

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+L R    +  + +T   +L E   KPSG L++       +  ++  L  F   Y DI 
Sbjct: 86  SRLARRLGPMMSEFDTLMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAYTDIT 145

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +  +DI++   D A+   + IQ   +  R    +    YA+P YL     P   
Sbjct: 146 IDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLISIRLGPELKRIVYASPRYLARFGAPSEP 205

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
            +L  HN I F    P     + W     +   E  +S  L V+     +   + G GI 
Sbjct: 206 GDLVHHNCINFRG--PHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKGIG 263

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + I K   D+ +L+ ++E  + P      CYP+    +  LKA  +++  ++R
Sbjct: 264 YGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSR 319


>gi|168820388|ref|ZP_02832388.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205342924|gb|EDZ29688.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087315|emb|CBY97080.1| probable RuBisCO transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 303

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 145/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +P+++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPNLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|163850194|ref|YP_001638237.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|163661799|gb|ABY29166.1| LysR substrate-binding [Methylobacterium extorquens PA1]
          Length = 307

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 127/261 (48%), Gaps = 8/261 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  SG F  AAE+L L + ++++ +  LE E+G++L +R  R L++T +G+  H
Sbjct: 7   MEVFVEVVESGGFARAAERLRLHRPAVTKAVQHLEAELGVQLLHRTTRKLSVTAEGAIFH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   +  T      +   P G +R+   I L + ++   L  F   YP++++ L 
Sbjct: 67  ERCRNVLADVADTLATFSPTR-PPKGPVRVDVPISLAKAVIIPALPGFCERYPEVELTLR 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+  +  DCA+R+   ++ S L  R++ T+ M   AAP YL    +P  ++ LD
Sbjct: 126 SSDHQVDLVGEGVDCAVRIGT-LEDSGLSVRRIGTVPMLTCAAPAYLARHGKPTGLENLD 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + F  LI       +W   +D R +     S + V+   +++   + G G+   P 
Sbjct: 185 GHLAVNF--LIRHTRRTMDWNFLIDGRTVARSLRSGIVVDDTEAMVTGAIAGLGLIQAPR 242

Query: 247 YIVKDNPN---LVRIMEDVIT 264
             ++ + N   LV I+ D+ T
Sbjct: 243 PSLQPHVNAGTLVEILPDLAT 263


>gi|16263265|ref|NP_436058.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|307318123|ref|ZP_07597559.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|14523940|gb|AAK65470.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|306896164|gb|EFN26914.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 307

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 10/287 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L  F  VA   SFT AA +L ++QS++S  I  LET +G++L  R  R + +TE G
Sbjct: 5   DFNDLLWFLAVAEERSFTRAAAKLGITQSTLSHTIKRLETRMGLRLLTRTTRSVAVTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +     +      L     KPSG ++I  +    ++L+   L+  LL YPDI+
Sbjct: 65  ERLLRSLAPRISAIRDEIAALMAFRDKPSGTVKITLSDHALESLVWPKLQPVLLEYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  DN   +I  D  D  IRL + ++   +  R      + A A+P YL +   P   
Sbjct: 125 LELSRDNGFRNIVEDGFDAGIRLGESVEKDMIAVRIGPDWRLLAVASPDYLADRPLPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           QEL +HN I       +     +++   ++   E R+     L  NS   ++   + G G
Sbjct: 185 QELIQHNCINSR----QATGGGHYVWEFEKNGQELRVRVDGQLTFNSSYPMVDAALKGHG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           IA LP+ +V  +     LV ++E    P    Y  YP    N+   K
Sbjct: 241 IAYLPEDLVAGHIAAGRLVALLEPWSPPFAGYYIYYPSRHHNSPAFK 287


>gi|127514335|ref|YP_001095532.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126639630|gb|ABO25273.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 311

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 140/303 (46%), Gaps = 15/303 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ + L+++++SR+I+ LET+ G++L YR  R L LTE 
Sbjct: 1   MDLNRIQMFAQVVDKGSFTSAAKAMGLTKATVSRKIAELETDTGVQLLYRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +     +   L++ + +L  S     G L+I   I+LGQ         FL  +P++
Sbjct: 61  GSIYYNKIQRILMDLQSAEDQLSASQETIKGNLKIVCPIELGQLFFGRIFARFLEAHPEM 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +   L N+ +D+  +  D   ++   ++ S L   +++       A+P YL     P +
Sbjct: 121 TLDAELTNRKVDMIEEGIDILFQVSD-VRDSRLQSYRVLNTDKSLVASPDYLARHGTPAT 179

Query: 183 IQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            Q+L  H  I    T  D   +  +   W+        EP  + L VN+     +  + G
Sbjct: 180 PQDLIDHKAIRLKSTHIDGGWRLFDGQQWITI------EPE-AQLTVNNVTLAREAAIEG 232

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIA  P  + +   D  +L+ ++ D       +   +P       K +AF  +I+L   
Sbjct: 233 LGIATAPTLVAQAAIDEGHLIPLLTDFPMAQTAITLSFPRRAYLPRKYRAFIEYIYLSLF 292

Query: 296 DWK 298
           D +
Sbjct: 293 DRR 295


>gi|217422905|ref|ZP_03454407.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217393813|gb|EEC33833.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 305

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE G +
Sbjct: 8   DDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++  T ++   ++    ++  +   P G LRI+++   G+++L   L  F   YP + ++
Sbjct: 68  VYAWTEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLGFNERYPQLNVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  IR+   I    LI ++L T +    A+P YL     P  + +
Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-PDHLIAKRLATNYRVLCASPGYLARYGTPRQLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L  H  +     I +    F  W  TV       ++   L  N     +Q+ + G GI L
Sbjct: 187 LGAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               I +  P      L R++ +   P+  V+  YP  L  + K++   +F+
Sbjct: 243 --RSIWEAGPLLASGELRRVLPEASQPA-NVWAVYPARLAASAKVRVCVDFL 291


>gi|209518408|ref|ZP_03267231.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501129|gb|EEA01162.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 301

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 111/203 (54%), Gaps = 8/203 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  SG+FT AA+ +++ +SS++R I  LE E+G++L +R +R LTLT++G   +
Sbjct: 7   MQTFVRVVDSGTFTRAADLMNVPKSSVTRLIQELEKELGVRLLHRTSRQLTLTQEGQIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  ++ +    +  ++  P GK+R+     L   L+   + +F   YPD+Q++L 
Sbjct: 67  EGSIRVLDEVGSLDGSVLSATRSPKGKIRVELPGSLAYQLVLPAMPDFFARYPDVQVELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184
           + N+ +D+  +  DC +RL  P+ S SLI R   T+ +   A+P Y++     REP  + 
Sbjct: 127 VGNRSVDLIAENLDCVLRL-GPLLSDSLIARSAGTLPLVTCASPAYIERHGLPREPADL- 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNW 207
            +  H ++      P+   DF +
Sbjct: 185 -MQGHTIVRMNS--PRSGRDFAF 204


>gi|184158676|ref|YP_001847015.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332874371|ref|ZP_08442282.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183210270|gb|ACC57668.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322507513|gb|ADX02967.1| Regulatory protein LysR:LysR, substrate-binding protein
           [Acinetobacter baumannii 1656-2]
 gi|323518591|gb|ADX92972.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332737450|gb|EGJ68366.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 300

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 13/222 (5%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA   S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR +  + +S+LI R L    +   A+P YLK  
Sbjct: 121 KYPDIQIEISISNRNVDLIAEGFDLAIR-QGQLPNSTLIARPLEQAPLKLVASPAYLKRM 179

Query: 178 REPLSIQELDKHNLITF-----GDLIPKCM----EDFNWLAT 210
             P +++EL  H  I F     G + P  +    E+  W+ T
Sbjct: 180 GIPKNLEELKHHQCIAFELPSSGKITPWFLKNDNEEIQWIPT 221


>gi|311103662|ref|YP_003976515.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758351|gb|ADP13800.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           13 [Achromobacter xylosoxidans A8]
          Length = 334

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 138/296 (46%), Gaps = 19/296 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--- 66
            F  VA  G+F  A ++L + +S++SR +  LE ++G +LF R  R  +LT +G +    
Sbjct: 33  AFMAVAVEGNFAKAGDRLGIGRSAVSRSVQKLEDQLGTRLFVRTTRSTSLTPEGQRFYEQ 92

Query: 67  -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H     +   L+  + EL+E    PSG +R+ +T+  G+ ++   L +F    P+I ++
Sbjct: 93  CHPGVERIIQALDDMR-ELREG--PPSGLVRVCSTVGFGRKVVAPLLNDFRKANPNISVE 149

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD+   D + D  D + R  + ++ S +I +K++ + M   A+P Y      PLS+ E
Sbjct: 150 LLLDDGPTDFTTDRVDVSFRNGR-MEDSQVIAKKVIPMQMMLCASPDYAARHGLPLSVDE 208

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H  + F   +      + W   V    R    P +  L  N    ++Q  + G GIA
Sbjct: 209 LSRHGCVNF---LLASGRVYEWEFKVGGHLRKFAPPAM--LTFNDADLVLQAVLDGHGIA 263

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +  Y V ++     LV  +          Y C+        +++ F +F+  + R
Sbjct: 264 QMAGYQVCEHLRAGTLVACLPQYAPDDRGHYLCFLSRQHLPARMRVFIDFMTERIR 319


>gi|172063492|ref|YP_001811143.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996009|gb|ACB66927.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 300

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 134/302 (44%), Gaps = 11/302 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+D +R+F  V   GSFT A+ QL +  S +SR++  LE ++G++L YR  R +++TE 
Sbjct: 1   MDFDSIRIFLRVVERGSFTAASVQLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEG 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     + +     P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYERCLRAEEILLDADRQARALRTDPEGTLRVLVPYSIGLFELEPALAEFHRRYPRV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  S  + R L   H    A+P YL+    P +
Sbjct: 121 QLVLIYDNSPLDLVEHGFDVALRA-GMLTDSGYVARSLGWSHAKLAASPAYLERAGRPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             EL +H+++  G   P         A    D PI    IS    N  +++++    G G
Sbjct: 180 PHELAQHDILYVGRDAPGLTLRLTNAAGDVADVPIRPVLIS----NESITVLRQAASGGG 235

Query: 241 IALLPD-YIVK--DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IAL+   YI +  +   L  ++ D   T    ++  YP       K++ F  F+      
Sbjct: 236 IALISTHYIARRLEKNELEIVLPDWHRTDDVELHALYPRRATLDSKVRIFVEFLTEVFTG 295

Query: 297 WK 298
           W+
Sbjct: 296 WR 297


>gi|83944023|ref|ZP_00956480.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
 gi|83845270|gb|EAP83150.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
          Length = 300

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 141/291 (48%), Gaps = 10/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L +F   AR G+   A  +  LS +S +++I  LE+EVG +L +R  R +++T +G
Sbjct: 4   DLKLLELFVRAARLGAIGKAGAEFGLSPTSATQRIQALESEVGAQLLHRTTRSVSVTLEG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +    ++  ++   +++   +    G LR+A     G+  +   + EFL ++P + 
Sbjct: 64  ERLLKHAERIFETVQDAMLDVSGENQVLRGTLRLAGPASFGRKYIAPFVTEFLSMHPGLT 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL L +   DI  +  DCAIRL   ++SSSL  +KL +      AAP YLK    P + 
Sbjct: 124 VQLHLSDTVFDIVDNGFDCAIRL-GALESSSLKAQKLSSCPRILVAAPDYLKAMGTPQTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q     +L+ F  +I   ++++ +     +            N    + +  + G GIA 
Sbjct: 183 Q-----DLVHFDCVIRDALQNWKFKGPHGKEAAVKVAGRFVTNLAEGVTEAAISGFGIAR 237

Query: 244 LPDYIVK---DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V    ++  LV +++  ++ P + ++F +P       +++ FR+FI
Sbjct: 238 KCTWEVAEHLESGELVTVLDRYIVAPEWNIHFMHPPGGIEPLRVRQFRSFI 288


>gi|170701479|ref|ZP_02892433.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133603|gb|EDT01977.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 299

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 136/292 (46%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +F  AA++L ++Q ++++Q+  LE  V ++LF R  RGL LT +G +
Sbjct: 14  NALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDVVEVQLFRRLPRGLALTREGLE 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S V   L+           +P+  L ++TT       L   L +F  L+PDI+++
Sbjct: 74  YF---SSVQRALQIISDATDALGQRPT-VLAVSTTPSFASKWLIPRLADFGRLHPDIEVR 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D +      D  D AIRL KP   + L    L  + + A A+P  L       +  +
Sbjct: 130 VIADERLASFRADGVDIAIRLSKPPFPAGLAAELLAPLDIFAVASPKLLDGGPPIRTPAD 189

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    DL P+ +E        D P   PR S     S L+I    V G GIAL 
Sbjct: 190 LSMHALLHDAHDLWPEFIEKLGGKGQAD-PTKGPRFS----QSLLAI-DAAVAGQGIALT 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + +V+ +     L R+ +     S   Y  +P+A  ++  L+A R ++F +
Sbjct: 244 SEPLVERDIAEGRLRRVFDFSFPMSLGFYVVFPQAHAHSEALQAMRRWLFAQ 295


>gi|104781076|ref|YP_607574.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110063|emb|CAK14768.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 306

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 14/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F + A +GSFT AA Q  ++ +++SR ++ LE  +G++LF R  R + L+E G   +
Sbjct: 13  LELFCLAADAGSFTEAATQAGVTPAAVSRSVARLEERLGVRLFVRTTRQMRLSEAGQAYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +   +L   + ++    ++PSG+LRI+       + L   L  F   Y  +Q+ + 
Sbjct: 73  QQCRQALGQLVEAERQVAGGQLEPSGRLRISAPTPYAHHRLLPLLPRFRERYTQVQVDVH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+++D + +  D AIR R P   S L+ R+L    +     P YL     P +  +L 
Sbjct: 133 VSNRNVDFAEEPFDLAIRGRAPA-DSRLVARRLEDAELVIVGTPGYLARKGVPRTPADLA 191

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H+ I F     G   P        +  +D   G   ++CL    +L+       G G+ 
Sbjct: 192 EHDCIQFEMPSSGRRPPWSFRQDGQVVEIDTQGG---LTCL--GDFLATSTLARHGGGLM 246

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               + V+D   +  LV ++ D    S      YP+A     K++ F +F+
Sbjct: 247 QAYRFTVQDALASGELVEVLGDYGGTSRPFMLVYPQARHMPLKVRVFIDFL 297


>gi|317054158|ref|YP_004118183.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952153|gb|ADU71627.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 320

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 128/269 (47%), Gaps = 6/269 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF  V   GSFT  AE++ +S + I   I GLE  +G++L  R  R  +LT+ G  
Sbjct: 25  DSMAVFVRVVEKGSFTAVAEEMRISSTMIGLHIKGLEQHLGVRLLNRTTRRQSLTDFGHD 84

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   +   +        +P G LR+A  + LG ++L      F   +PD+ + 
Sbjct: 85  YYQRCQQILADIRDAESLASRQHQQPQGLLRVACPVSLGVHVLAALNARFQASWPDVTLD 144

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D++ D  D  +++ +  Q +SL+ R+L        A+P YL+    P   ++
Sbjct: 145 IRLSDRPLDMAEDGIDVMLKIGELEQVNSLVARRLADYRSVVCASPAYLEAFGTPAHPEQ 204

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + F   +      F      D+P   P    + +N+  ++ +  + G GI + P
Sbjct: 205 LIDHRCLGFAHPLASGRWQF---IDADKPFSVPVKLVMSINNGEALRRAALQGCGIIMQP 261

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYF 271
           + ++ D+    +L+R+   + TP+  V+ 
Sbjct: 262 EVLLADDLRSGHLIRLFNQMTTPARPVHL 290


>gi|163732779|ref|ZP_02140224.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
 gi|161394139|gb|EDQ18463.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
          Length = 309

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 7/257 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   GS + A   L +S +  S +IS LE  + ++LF R  R LT TEQG  
Sbjct: 5   DNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEDHLSVRLFQRTTRSLTPTEQGKA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+   +E  + ++ + +  P G L +A  + LG+ L+   +  FL  YP++ I+
Sbjct: 65  FYGGACEILSSVENAEAQVVDITENPKGALYVAAPLGLGRRLIAPQVPAFLAAYPEVSIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A  L +P  S+  I RK+  +     AAP Y+     P S  E
Sbjct: 125 LRLTDRKVDLTTEGLDLAFFLGQPADSTLRI-RKIADVPRILCAAPSYIAARGNPTSGDE 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           L  D+H  +      P   E F W    +  + + R++   + +    +  + + G GI 
Sbjct: 184 LVADRHECLNL--RFPGATE-FQWRLRTEEGLKKYRVTGRYESDDGDVLTDWALAGHGIT 240

Query: 243 LLPDYIVKDNPNLVRIM 259
           L P + + D+    R++
Sbjct: 241 LKPVFEISDHLKAGRLV 257


>gi|34496571|ref|NP_900786.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34102425|gb|AAQ58791.1| probable transcriptional regulator LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 294

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 129/286 (45%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSFT AA+   LSQ  + + I+ LE  +G KL  R  R   LTE G   +
Sbjct: 7   MELFVAVVEKGSFTAAADAHRLSQPMVGKHIAALEQRLGGKLLVRTTRRQQLTELGQHYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +L   +        +P G LR+  +I  G   L   L EF+  +PDI ++L 
Sbjct: 67  QRCRAILAELAAAEDAAALLRAQPRGVLRVNASITFGTLRLAPLLAEFMARWPDIGVELE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D+  D  D   R+ + +  S ++ R+L    M   A+P YL     P +  +L 
Sbjct: 127 LSDQLADLVADGYDAVFRIGR-LADSGMVARRLRPYRMMIAASPAYLAARGTPATPADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + F     +   D  W A         R S  Q N   ++ Q  + G+GIAL  + 
Sbjct: 186 DHDCLGFS----RWRRDDGWEALAQLHGVRMRASRFQCNQGQALRQLALSGAGIALQAEA 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ ++     LV +++  +     ++  YP   +   KL+ F +FI
Sbjct: 242 LLAEDVAAGRLVSLLDGYLPDPKPMHLIYPADRQPLPKLRVFVDFI 287


>gi|330972303|gb|EGH72369.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 313

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 140/295 (47%), Gaps = 20/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L  T  G 
Sbjct: 15  FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   S +P G LR++  +      L   L +FL  Y D+ +
Sbjct: 75  SYYESALRLLAEVEQVEQGITGQSSEPRGTLRLSAPLTFAVAHLGCLLPQFLQRYRDVAV 134

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++  I     A+P YL     PL  +
Sbjct: 135 EVDLSDRPVDVISEGYDLVLRI-GVLEDSSLIARRIAAIDRVYCASPGYLAERGTPLEPE 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238
           +L +H+ + +G           W     R  G  + S L V+  + +          V G
Sbjct: 194 DLHQHDCLPYGH-----SRQVQW-----RFQGAGKASSLNVSGRMRVNNGELLRDAAVAG 243

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  LP +IV       +LVR+++D      T+   YP+  + +  ++ F  F+
Sbjct: 244 LGITYLPTFIVGAALRAGSLVRVLDDRRPEPLTLSAVYPQHRQASRLVQMFIEFL 298


>gi|167740866|ref|ZP_02413640.1| putative HTH-type transcriptional regulator YeaT [Burkholderia
           pseudomallei 14]
          Length = 305

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE G +
Sbjct: 8   DDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++  T ++   ++    ++  +   P G LRI+++   G+++L   L  F   YP + ++
Sbjct: 68  VYAWTEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLGFNERYPQLNVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D  IR+   I    LI ++L T +    A+P YL     P  + +
Sbjct: 128 LDLFDRLVDVAGEGFDLDIRIGDEI-PDHLIAKRLATNYRVLCASPGYLARYGTPRQLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L  H  +     I +    F  W  TV       ++   L  N     +Q+ + G GI L
Sbjct: 187 LGAHQCLA----IKERDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               I +  P      L R++ +   P+  V+  YP  L  + K++   +F+
Sbjct: 243 --RSIWEAGPLLASGELRRVLPEASQPA-NVWAIYPARLAASAKVRVCVDFL 291


>gi|264678911|ref|YP_003278818.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|299532379|ref|ZP_07045771.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|262209424|gb|ACY33522.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
 gi|298719617|gb|EFI60582.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 300

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 130/277 (46%), Gaps = 13/277 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +ARSGS   AA ++ +  +++SR+I  LE ++G  LF R      LTE 
Sbjct: 1   MDWDHLRFFGELARSGSMAAAARRMGVEHTTVSRRIQALEKQLGAVLFAREGGQWRLTEA 60

Query: 63  GSKLHRVTSEVYHK---LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G +L  VT+ +      LE   +    ++   +G +R+  T   G  +L   L    L Y
Sbjct: 61  GRQLQEVTNTMQSAVDGLERGPLAHAATAEGLAGLVRVGATEGFGTQMLASELARLTLRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L+   + + +S   AD  I L +P +  S++  KL    ++ Y    YL   R+
Sbjct: 121 PLLSVDLLALPRMLHLSSREADIVISLERP-KRGSVVVTKLTDYRLYLYGQREYL--ARK 177

Query: 180 PL--SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           PL    ++L  H+ + + D +    E    L T+ R    P    L+  S  +  +    
Sbjct: 178 PLVARTEDLRHHSFVHYVDDLLFTRE-LQLLDTLHR----PERFALRSTSITAQYEAVRA 232

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
           G+G+A+LP ++   +P L R++ +    + T +   P
Sbjct: 233 GAGLAVLPAFVADKDPILSRVLPEQACFTRTFWMSMP 269


>gi|168230986|ref|ZP_02656044.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194469177|ref|ZP_03075161.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194455541|gb|EDX44380.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205334404|gb|EDZ21168.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 303

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 144/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARNPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++ F +F+
Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRTFIDFL 290


>gi|222871177|gb|EEF08308.1| predicted protein [Populus trichocarpa]
          Length = 209

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G+FT AA+ L L + ++++QI  LE  V +KL  R  R +T+T  G+  +
Sbjct: 7   MRVFVRVVEAGNFTRAADSLDLPKGTVTKQIQALEARVRVKLLNRTTRRVTVTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + + +  +  +  +  +   PSG+LR+     + + ++   L EF   YPDIQI L 
Sbjct: 67  ERAARLLNDFDDLEASMVNTQTAPSGRLRLDVGSSMARLIIIPALTEFCERYPDIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR  + +   SL+ R++ +++    A+P YL     P    ELD
Sbjct: 127 VGDRLVDLISDNVDCVIRGGE-LSDQSLVARRIGSMNWITVASPAYLARHGVPQHPSELD 185

Query: 188 -KHNLITF 194
            KH ++ F
Sbjct: 186 TKHQIVAF 193


>gi|187920033|ref|YP_001889064.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718471|gb|ACD19694.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 301

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 132/275 (48%), Gaps = 15/275 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SF+ AA+ L + ++S+S  +  LE+ +G++L  R  R + +T+ G+  +
Sbjct: 7   MAVFKRVVDASSFSKAADSLEMPRASVSTVVQNLESHLGVRLLNRTTRRVQVTDDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  ++   +  L      P G +R+ T+     ++L   +++F   YPDI ++L 
Sbjct: 67  EYCARILAEVSDAESALSSKRQSPRGTVRVDTSATFAAHVLIPVMRDFNARYPDITVKLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++++D+  +  DC IR+   +  S+L+ R L ++ M   AAP YL+   EP +  +LD
Sbjct: 127 LADRNVDLVQEGVDCVIRI-GVLDDSNLVARSLGSVRMTICAAPAYLEQMGEPATPDDLD 185

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H+ + +     G + P   E    L  + RPI       L VN     +   V G G+ 
Sbjct: 186 RHHAVNYFSARTGRVYPMEFESDGVL--IKRPIE----GKLAVNEGQVYVASAVEGLGLI 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
             P ++     ++  L  I+ D       +   YP
Sbjct: 240 QTPRFMAAKAIESGALREILRDCHCAPLPLSILYP 274


>gi|317405757|gb|EFV86049.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 288

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 9/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD  R+F  + R+G+   AA  L + Q++  R+++ LE  +  +LF R   G   T  
Sbjct: 1   MDWDNARIFLAIYRNGTLRGAAALLQIDQATAGRRLAALEASLDARLFLRTPSGYVPTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +    +  Q ++Q    + SG +R+AT+  +    +   +    + +PDI
Sbjct: 61  GEQAFAAAERMEQAADQLQRQMQGLDHRLSGVVRVATSETVASYFIMEAISRLHVQHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    +  +++   AD AIR  KP  +  LIQR L    +  YA+  YL+   EP  
Sbjct: 121 RVALSTSIQLSNLTRREADLAIRNIKP-DNPDLIQRHLARKEVGLYASRSYLEAHGEPRP 179

Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                 H L+T+   ++P   + F        P G  RI+ +++NS L I++    G GI
Sbjct: 180 GTAFAGHTLVTYQQAVLPGWSDTF-----CGEPTGNGRIA-MELNSGLMIIEAVAAGLGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++    P+LVRI      P + ++      L  T +++A  + I
Sbjct: 234 GELPIHMAPQYPDLVRIWPHRSEP-YDLWLVMHGDLNRTARVRAVADAI 281


>gi|56478289|ref|YP_159878.1| LysR family transcriptional regulator [Aromatoleum aromaticum EbN1]
 gi|56314332|emb|CAI08977.1| Transcriptional regulatory protein,lysR family [Aromatoleum
           aromaticum EbN1]
          Length = 306

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 129/272 (47%), Gaps = 16/272 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA +GSFT  A+ L++++S+I+RQ++GLE  +G KL  R  R L+LT  G+     
Sbjct: 9   VFVRVAEAGSFTAVADYLNVARSAITRQVAGLEAHLGTKLLARSTRRLSLTSSGAAYLEK 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+   +E  + +L      P G +RI+  +  G   L   + +F+  YP++ + L   
Sbjct: 69  CREILAMVEAAEGDLAGEKRAPRGPIRISVPMSFGIRHLVPLISDFITTYPEVTVDLEFT 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +++     D  +R+ + I   +L+ R+L T  +   AAP YL     P    EL  H
Sbjct: 129 DRRVNLIEGGLDFTVRISQHID-PTLVIRRLSTSELTVVAAPAYLDRHGRPQHPDELLAH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIALLP 245
           + +T+  L P       W   +D   GE R       LQ+N+  ++++  + G GI   P
Sbjct: 188 HCLTY-TLAPSS----GWSFRID---GEHRTVPVKGRLQMNNGDALLEAAIRGLGITNQP 239

Query: 246 DYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274
            ++         L  ++ D       VY  +P
Sbjct: 240 TFLSAQAVQAGLLEEVLADYSATELQVYAVFP 271


>gi|326388315|ref|ZP_08209911.1| putative transcriptional regulator [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326207047|gb|EGD57868.1| putative transcriptional regulator [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 301

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 1/188 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  VAR GS   AA  L L+ S++SR ++ LE  +G++L  R  R L LT +G   
Sbjct: 7   EMEVFLAVARQGSLARAASHLRLTPSAVSRTLARLEARLGVQLIARTTRALALTAEGESY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +  ++++ + +       PSG+LR+  ++  G + L   L EF   YP I + L
Sbjct: 67  RQRVEGLVEEIDSIERDFGTLEQGPSGRLRVNASVPFGTHCLIPILPEFQREYPAITVDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+    AD AIR+  P++ S L  RKL    M   A+P YL    EP +  +L
Sbjct: 127 ALTDTVVDLVDARADIAIRI-GPLRDSRLRARKLGHSRMAVVASPEYLARHGEPATPADL 185

Query: 187 DKHNLITF 194
             H  + F
Sbjct: 186 ADHACLRF 193


>gi|170691642|ref|ZP_02882807.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143847|gb|EDT12010.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 311

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 145/290 (50%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRQVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +LE  +  +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQVLTELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDIT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R +   H+   A+P YL+    P +  +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGMKSSSLIARPIAMAHLLLCASPDYLRRRGTPKTAADL 186

Query: 187 DKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244
            +HN + +  +     M+     A V       R+S   + ++L   +  VL G+GIALL
Sbjct: 187 ARHNYLQYAGVSALDVMQTTGEAARV-------RLSGNLIVNHLEAQRVMVLHGAGIALL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
              ++  +     LV ++ D + P    ++  Y      + K+++F +F+
Sbjct: 240 GTEVIGADLAEGRLVPLLVDEVPPRELPIHVVYASRRHLSAKVRSFVDFL 289


>gi|163738198|ref|ZP_02145614.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161388814|gb|EDQ13167.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 292

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 14/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R +  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHVDAIEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+      SG+L + T++     LL   L EF   +P++ 
Sbjct: 63  QDLLRVAQATDDQFGQLVGRLKGHGDAVSGEL-VVTSLSSMSTLLVPALTEFQRQHPELV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+ +  ++   +    A  AIR   P +    + +  +      YA+  Y++       +
Sbjct: 122 IRFLTGSRLFRLEYGEAHVAIRAGSPPEQPDNVVQPFMRQQHGLYASASYIERFGPLKGL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGS 239
            ++  H  I        C +D +  A   R +     E  +S   VN+ +S+ +  + G+
Sbjct: 182 DDMSNHRFI--------CNDDIDSRAPYSRWLRAHAPESALSFRCVNA-VSMQEALLAGA 232

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           GI  L  +  + +P L ++ME +   +  ++      L  T K+++F +F+  +A+ W
Sbjct: 233 GIGFLTRWEAERHPGLTQMMEPLPEWAGELWLVTHVDLHRTTKVQSFLSFLKAEAKAW 290


>gi|295681438|ref|YP_003610012.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295441333|gb|ADG20501.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 294

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  VA + SFT    QL LS S++ + I+ +E  +G++LF+R  R +TLT +G+
Sbjct: 4   FGGISLFVQVADTRSFTETGRQLGLSSSAVGKSIARMEERLGVRLFHRSTRSITLTAEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  ++E  + EL  ++  P G+LRI+T    G  L+   L  F+  YPDI++
Sbjct: 64  LFLERCRRILGEIEAAEAELSGAAGSPRGRLRISTPQLSG--LIMPALDGFMAQYPDIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++  DI  +  D  IR  +    S L+ R+L +       +  YL+    P    
Sbjct: 122 DVDLSDRMADIIEEGFDAVIRTGEQ-HDSRLVSRRLGSCGQVLVGSAAYLERHGTPAHPS 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243
           EL  H  +      P   +   W   +     +P +      + + ++ +  L   G+A 
Sbjct: 181 ELATHACLLHK--FPATGKFERWPFRLGASEAQPELPQTFSANTIEVLAFLALQDKGLAF 238

Query: 244 LPDYIVKD--NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +IV+D  +   +RI + D I  + T +  +P +   + KL+ F ++I
Sbjct: 239 LPTFIVRDALSSGALRIVLNDYIEQTVTFWILWPASRYASPKLRVFIDYI 288


>gi|254523395|ref|ZP_05135450.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219720986|gb|EED39511.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 303

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 140/300 (46%), Gaps = 9/300 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D + +R+   VA + SFT AA QL LSQS +SR IS LE  +G+KL  R+ R + LT 
Sbjct: 9   SLDLNAVRMLVQVAEARSFTVAAGQLGLSQSGLSRAISRLEATLGVKLLQRNTRNVALTP 68

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +     + +    +  + +L +    PSG L+I+     G+ +L   L   L  +P 
Sbjct: 69  DGRQFVDQVAPLLCGFDDAERQLADRPCTPSGTLKISAPSMFGRKVLVPLLGPLLQQHPQ 128

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++ +L ++ +D+  +  D A+R    I    ++ R L  +     A+P YL  C  P+
Sbjct: 129 LQVEAVLSDRLVDLVEEGFDAALRT-GTIADQRMVARPLKPLRWLTVASPDYLARCGAPV 187

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  L  H  +   +L    + D+ +L     R +  P          L  ++  + G G
Sbjct: 188 DVAALQDHACLAVRNLRSGRLVDWQFLQDGQLREVTPPARMVFDCGDPL--VEAAIAGIG 245

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  + D+ V D   +  L R+++     S  +   YP + +++ KL+   + +   A +W
Sbjct: 246 IVQVMDFAVADALADGRLQRVLQPFEGRSRALSLIYPPSRQHSPKLQVLADALL--AGEW 303


>gi|13472475|ref|NP_104042.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023221|dbj|BAB49828.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 307

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 143/291 (49%), Gaps = 11/291 (3%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L      AR+   GSF  A   L +S S++ + ++ LE E+G++L  R  R + LTE+
Sbjct: 2   DRLSGLLAFARTAELGSFIAAGRALGISASAVGKSVARLEQELGVRLLQRSTRRVGLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +   ++  +  L  +   P G+LR++T I +  +LL   L EF+  YP+I
Sbjct: 62  GRLFNERVRRILDDIDDAEAMLSRTRETPHGRLRVSTPI-VTYHLLLPVLSEFMSRYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +  +++ +D+  +  D AIR  + +  S L+ R +    M   AAP YL+    P  
Sbjct: 121 ELDIDFNDRIVDVIEEGIDVAIRSGE-LPDSRLVSRPVGPFRMLLCAAPSYLERHGTPGE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  I F  L    + ++ ++     P    +++C   N+  ++    + G GIA
Sbjct: 180 PADLIRHFGINFRFLNSGRLLEWPFITGSAEPQIRSKLTC---NNMEALKGATIAGLGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +PD++V++   +  L  +++D I         +P     + K++ F +F+
Sbjct: 237 CMPDFLVREALLDGRLRTVLDDHIDGRGQFRMLWPSNRHLSPKVRVFVDFL 287


>gi|288937639|ref|YP_003441698.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290512377|ref|ZP_06551744.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|288892348|gb|ADC60666.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289775372|gb|EFD83373.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 315

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 10/299 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           FD+   + VF  VA  GSFT  A  L  + S +SR ++ LET +G +L  R  R ++LTE
Sbjct: 5   FDYLADVEVFLAVAERGSFTAGAVALSSTPSVLSRAVTRLETRLGCQLLRRSTRRISLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS       + +  L+  + E Q      SG+++++     G   L   L  +  L+PD
Sbjct: 65  AGSAYLSQVRQAFEVLDNAERETQGQKGALSGRVKLSAPTTWGHYRLPARLALYRQLHPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L + N+++DI  +  D  +R +  +  S L+ +KL    +   A+P YL++   PL
Sbjct: 125 VQIELNITNRNVDIIAEGFDLVVR-QGHLPDSGLVAKKLEDAALCLVASPAYLRSTARPL 183

Query: 182 S-IQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQV-NSYLSIMQYCVLG 238
           S I +L  H+ +TF  ++P   +   W+   D R I     S L V +  L ++   + G
Sbjct: 184 SKIADLRHHSCLTF--IMPATGKVAEWVFREDGRDISWLPTSSLHVSDDVLGVVSLALQG 241

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +GI     +IV++      LV ++      S      YP     +   +A    + + A
Sbjct: 242 AGICQSYAFIVQEAIARGELVPVLPAFAGRSRPFSVLYPPHKSQSAAARALITLLTMPA 300


>gi|209518243|ref|ZP_03267070.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501358|gb|EEA01387.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 310

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 146/291 (50%), Gaps = 11/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  +GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRHVVEAGSFVGAAEKMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+   +L+     +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQALTELDEAGQAVGAASVVPHGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R++ T H+   A+P YL+    P S+ +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPGGLKSSSLIARQIATAHLVLCASPAYLRKHGTPKSVADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +  +    +E    +AT D      +   L VN   ++    + G+GIA L  
Sbjct: 187 ARHNYLQYAGV--SALE----VATGDAASRVRQSGNLIVNQLEALRVVVLHGAGIATLGT 240

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++  +     +V ++ D + P    ++  Y      + K+++F +F+  +
Sbjct: 241 EVIGSDLAEGRIVPLLVDEVPPRELPIHVIYTSRRHLSAKVRSFVDFLVAR 291


>gi|153215012|ref|ZP_01949771.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124114986|gb|EAY33806.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
          Length = 301

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRGFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 AEHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV +  D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFLDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|27367782|ref|NP_763309.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27359355|gb|AAO08299.1|AE016813_51 Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 305

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LT+ G  L 
Sbjct: 11  IRSFVLIAQLGNFTKAAEALGVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTDAGKALF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                  H ++   +   +      G++RI      LG+ ++   + +F+  YP +++ L
Sbjct: 71  AQCETALHSIDQAVLAAVDDIEAVRGEIRINCVGGYLGEEVIAEVVGQFMQQYPQVRVDL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+ K ++ S  + RKL+ + M  YA+P YL     P   +EL
Sbjct: 131 DFSSHRVDLIEDEFDIAFRMGK-LEDSGFVARKLIDVEMGTYASPSYLATHGRPEHPKEL 189

Query: 187 DKHNLIT 193
           DKH  +T
Sbjct: 190 DKHACLT 196


>gi|33603201|ref|NP_890761.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33568832|emb|CAE34590.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 307

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 142/301 (47%), Gaps = 18/301 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ A+  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLYYFAQVVEQGGFSAASRVLDVPKSRLSRRISQLEDRLGVRLLQRTTRRLRLTTAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+       +  +++   +P+G + ++  + + Q +L   L EFL  +P + 
Sbjct: 63  ERYLHYCQEMTASARAAEDAMRQLQSEPAGPVVVSCPVSIAQQMLAPLLPEFLDAWPSVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++ N+ +D+  +  D A+R+R  + + + L+ + L        A+P YL+    P +
Sbjct: 123 VQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHLGIASGTLVASPAYLQRHGTPET 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
            QEL  H  ++F D       +  W  T  R  GE     +Q     N ++ + Q  V G
Sbjct: 183 PQELASHRTLSFND----PQNEVRWPLTNQR--GESVEVAVQPVLASNDFIVLTQAAVRG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294
            GIALLP    +       LVR++ D  +P   V+  YP      G + A R F+ FL  
Sbjct: 237 RGIALLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYP---SRRGMMPAVRAFLDFLAK 293

Query: 295 R 295
           R
Sbjct: 294 R 294


>gi|89094791|ref|ZP_01167725.1| LysR protein [Oceanospirillum sp. MED92]
 gi|89080956|gb|EAR60194.1| LysR protein [Oceanospirillum sp. MED92]
          Length = 303

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 143/303 (47%), Gaps = 14/303 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L +F+ + + GS   AA +L ++  S+S+ +  LE  +G+ LF R  R + LTE G 
Sbjct: 6   FNQLTIFHAIVQEGSIRGAARKLEIAPPSVSQALKQLENHLGLPLFTRSTRSIELTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +LH  T      L+     +Q+ S K SG++ I     + +  L+    EF  LYPDIQ+
Sbjct: 66  QLHEETRSALSTLDFALESVQDLSEKASGRVSITLPHFVFEIFLKPIYAEFCDLYPDIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L +K ++I  +  D  IR  + +++  + ++    +    +A+P Y+     P   +
Sbjct: 126 EISLTDKTVNILDEGIDLGIRFGERLEAGMVARQLTPDLEAALFASPEYVAKYGVPKQPE 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L  H LI +       L P  +E    +  ++ P      S + VN   ++      G 
Sbjct: 186 DLQHHRLIRYRFSASNQLAPLLLEHKGEVLNIEMP------SSIIVNDTNAMTDAASKGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  L   IV +      LV +M+D   P   +Y  + +  +   +++   +F+  KA+ 
Sbjct: 240 GIGCLVTPIVSEQFKRGELVPLMKDYWHPFSGLYLFFVQNSQKARRVRVLVDFLLEKAKQ 299

Query: 297 WKF 299
            ++
Sbjct: 300 LEY 302


>gi|268593273|ref|ZP_06127494.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291311171|gb|EFE51624.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 298

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 138/278 (49%), Gaps = 15/278 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F+ VAR  SFT AA +L +SQS++S  +  LE  +  +L  R  R +  TE G
Sbjct: 5   NFNELQIFFAVAREKSFTKAAAKLGVSQSALSHAVKALEERLNARLLTRTTRSVAATEMG 64

Query: 64  SK----LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            K    L    +E+ H+LE   I+L  ++   SG +R++T     ++LL   LK FL  Y
Sbjct: 65  EKIIACLEPRLAELNHELEAI-IQLNGAA---SGNIRLSTGEHAARSLLWPKLKPFLRAY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI ++L++DN  ++I  +  D  IRL + +    +  +    + +    +P Y +    
Sbjct: 121 PDINVELVVDNGFVNIVDEGFDAGIRLGESVDKDMVAVKIGSDMRLAIVGSPSYFETQGI 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P +  +L  H  I     +P     ++W    +      R+   L  N     +   + G
Sbjct: 181 PRTPHDLQHHRCINM--RLPTAGGLYHWEFEKEGKSLRVRVEGQLTFNLLSERIDAALSG 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            GIA +P+  +++   +  LV+I+ D   P+F+ Y+ Y
Sbjct: 239 FGIACVPEDTIQEPVKSGKLVQILSD-WCPAFSGYYLY 275


>gi|187928411|ref|YP_001898898.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725301|gb|ACD26466.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 300

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 129/294 (43%), Gaps = 16/294 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS + AAE L +S++ ++R ++ +E   G +L +R  R + LT  G      
Sbjct: 9   VFVAIVEHGSLSAAAEGLDMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTPAGEATLAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++        +     +  P G LRIA    L Q  L   +  +L  YP   + L++D
Sbjct: 69  CRQMLEIASQMAVSEGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQTAVDLVVD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ I++  +  D A+R+   +   +LI R L        AAP YL     P  +Q+L  H
Sbjct: 129 NRTINLVEERIDLAVRITNDLD-PNLIARPLGMCESVVVAAPSYLAAHGTPRRVQDLAVH 187

Query: 190 NLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           N +T   FG  + K  E     A  D P+G      L  N  + ++     G+GIAL P 
Sbjct: 188 NCLTYSYFGKSLWKFTEAKTG-APTDVPVG----GNLSANESMVLLAAAREGAGIALQPV 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +       +  LVR++ D +  +  ++  Y    +    L+A  +F+     DW
Sbjct: 243 FAAAPLIASGQLVRLLPDYVPQALGIHGVYSSRRQMPSALRAMLDFLV----DW 292


>gi|206563530|ref|YP_002234293.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039570|emb|CAR55538.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 304

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G +  
Sbjct: 10  LHVFMTVATAGNFTRAAAALGLTPAAVSLSIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
           R T   Y ++   +  L+++  +PSG LR+ T + L + L+    L  F   YP +++++
Sbjct: 70  RQTEPAYRQVMQARDALKDARSEPSGLLRV-TALPLARLLVIAPVLAPFRERYPKVRLEI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +N+ +DI+ +  D  IRL   +Q   +  R    +     A+P YL     P SI +L
Sbjct: 129 RYENELVDIAKEGFDAGIRLADRLQPGMIGVRIAPALTCALVASPGYLARHGAPASIAQL 188

Query: 187 DKHNLITF 194
           ++H  I F
Sbjct: 189 ERHACIRF 196


>gi|206559339|ref|YP_002230100.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035377|emb|CAR51253.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 324

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 140/287 (48%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q  + KPSG LR+     LG+ ++  +L  F   YPDI ++L 
Sbjct: 67  EHCMKIIAEIAEADASFQTGNRKPSGVLRVHMPSSLGRRIVLPSLSIFRQRYPDITLELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP  I +L 
Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPNEIADLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ + F            W+  +D    E R++  + VN   + +   + G G+     
Sbjct: 186 EHHAVNFRS--SHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  N    +LV ++ D       +   YP     + K++ F ++I
Sbjct: 244 FMVLPNLLDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWI 290


>gi|221066521|ref|ZP_03542626.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220711544|gb|EED66912.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 300

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 130/277 (46%), Gaps = 13/277 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +ARSGS   AA ++ +  +++SR+I  LE ++G  LF R      LTE 
Sbjct: 1   MDWDHLRFFGELARSGSMAAAARRMGVEHTTVSRRIQALEKQLGAVLFAREGGQWRLTEA 60

Query: 63  GSKLHRVTSEVYHK---LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G +L  VT+ +      LE   +    ++   +G +R+  T   G  +L   L    L Y
Sbjct: 61  GRQLQEVTNTMQSAVDGLERGPLAHAATAEGLAGLVRVGATEGFGTQMLASELARLTLRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L+   + + +S   AD  I L +P +  S++  KL    ++ Y    YL   R+
Sbjct: 121 PLLSVDLLALPRMLHLSSREADIVISLERP-KRGSVVVTKLTDYRLYLYGQREYL--ARK 177

Query: 180 PL--SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           PL    ++L  H+ + + D +    E    L T+ R    P    L+  S  +  +    
Sbjct: 178 PLVARTEDLRHHSFVHYVDDLLFTRE-LQLLDTLHR----PERFALRSTSITAQYEAVRA 232

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
           G+G+A+LP ++   +P L R++ +    + T +   P
Sbjct: 233 GAGLAVLPAFVADKDPILSRVLPEQACFTRTFWMSMP 269


>gi|170694898|ref|ZP_02886048.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140258|gb|EDT08436.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 304

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 138/294 (46%), Gaps = 22/294 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF+ AA +L L Q ++S+ ++ LE  +G +L  R  RGL  T  G + +
Sbjct: 7   METFVTVVDAGSFSAAARRLKLGQPAVSKAVAQLEERLGARLLLRSTRGLAPTAAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  H+ +  +  ++ESS   SG+LRI   +   +  +   LK FL  +P++ I ++
Sbjct: 67  EHALRAIHEADQAEQAVRESSDGLSGQLRIGAAVTFARLHVLPALKSFLHQHPNLSIDIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  +  D A+R+   +  SS+  R++ +        P Y      P +  +L 
Sbjct: 127 LDDRSVDLLEEGVDVALRM-GTLDDSSMTARRIASGRRVVVGTPSYFAEAGVPQTPVDLG 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-----MQYCVLGS-GI 241
           +H  + +   +    E  +WL + D    +   S + ++  +S+     M+  VL   G+
Sbjct: 186 RHQAVVYS--VRGGGE--SWLFSRD----DGSDSTVTLSGRISVNAAEGMRTAVLAHMGL 237

Query: 242 ALLPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+  +++    P L       ++ D   P+  ++  +P     T K +AF  F+
Sbjct: 238 AVASEWMFA--PELADGTVQAVLTDWTLPTIDLWAVFPAGRMTTAKARAFVAFV 289


>gi|15890711|ref|NP_356383.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15158982|gb|AAK89168.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 295

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 135/291 (46%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA +GSF  A  +L +S S++ + I+ LE E+G++LF R  R +TLTE G    
Sbjct: 7   LGIFIQVAEAGSFVAAGHRLGISGSAVGKAIARLEDELGVRLFNRSTRSMTLTEDGGFFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + ET Q +L  S   P G+LR+  ++ L   LL   +  F+  YPDI + L 
Sbjct: 67  DTCRRIQSEYETVQAQLSRSQAIPRGQLRV--SLPLAGMLLMPTISAFMDAYPDINLDLD 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  IR    I+ + L+ RKL T      AA  YL+    P   ++L 
Sbjct: 125 FTDRLVDVIEEGFDAVIRT-GDIRDTRLMSRKLGTFKHRIVAARGYLEAHGWPTVPEDLA 183

Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H  +       G   P  +        +D P+     S L+   YL+   +     G+ 
Sbjct: 184 RHRCLHHRFANSGKFEPWPLVRDGREIRIDLPVATV-ASTLEPLIYLAERSF-----GVT 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP + V        LV +++D +  + T    +P     + K++AF +++
Sbjct: 238 CLPSFAVASEIAEGKLVSLLDDYVADTGTFCVLWPTNRYLSPKVRAFVDYM 288


>gi|253686726|ref|YP_003015916.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753304|gb|ACT11380.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 298

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 141/295 (47%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F VV  +GS T AAEQL  + S ISR +  LE ++G  L +R  R L+L+
Sbjct: 1   MKVTLEELQAFVVVIDTGSITAAAEQLGQTTSGISRALRRLEDKLGTTLLHRTTRRLSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+        V H +E  + ++     +PSG+LR+ +     Q+++   + EF   YP
Sbjct: 61  EEGTMFLEHARGVLHAVEHAEEQVLLRHEQPSGRLRVNSASAFMQHVIVPLVPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+   + D AIR+   ++ S++  R L    +H  A+P YL+    P
Sbjct: 121 KIILELNTDDFVIDLLEQHTDIAIRI-GTLKDSTIHARPLGASKLHIVASPEYLQQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +++ L  H  + F       +E  N W          P    L  ++   + Q  + G 
Sbjct: 180 RTVESLADHICLGFTQ-----VESLNHWPLRHGLQNFYPITPALLASNGEILRQLALRGE 234

Query: 240 GIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +  ++++D+    R++    E+ +  S  VY  Y    +   ++  F +F+
Sbjct: 235 GIVRMSTFLIRDDLAAGRLVPILTEETVEASLPVYAVYYRNSQLAARITCFLDFM 289


>gi|104782192|ref|YP_608690.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95111179|emb|CAK15899.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 303

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 134/290 (46%), Gaps = 12/290 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A++GSFT AA  L L++S++ + I+ LE  + ++L  R  R L+LT++G      
Sbjct: 11  AFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGQVAFER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   L+  +  + +   KP+G LR+   +  GQ  +   L  +L  +P+++  +   
Sbjct: 71  WRQILDDLDEVETAMAQRRNKPTGTLRLTAPLSFGQRHVLPILDAYLKQWPELRADIRFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R+  P + S L+ R +        A+P YL+    P    +L  H
Sbjct: 131 DRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPEYLRQHGTPQVPADLYGH 190

Query: 190 NLITF--GDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + I F  G+   P        L   + P        L ++S  +++     G G+  LP 
Sbjct: 191 DKIAFLAGEKASPWRFRTEEGLHLCEEP------GRLNIDSSEAMLDGARAGFGLIHLPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           YI  D+     LV ++ D   P+  +   YP     + +++ F + + ++
Sbjct: 245 YITGDDLRSGALVEVLHDFRPPADPIRIVYPSRRHLSPRVRGFIDLLVVR 294


>gi|91779298|ref|YP_554506.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691958|gb|ABE35156.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 302

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 19/299 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF+ AA  L +S S++S  + GLE  + ++LF R  R + LTE G +L
Sbjct: 8   ELTAFVAIAHQRSFSAAARTLGVSPSALSHAMRGLEARLDVRLFNRTTRSVALTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R        LE    E   +  +PSG +RI+ +    + L+Q  L  FL  YPDI ++ 
Sbjct: 68  LRRVGPAIADLEDAVNEAASARNRPSGSIRISASESAARPLVQHVLPGFLATYPDIHVEF 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D + +DI  D  D  IR+ + +    +  R    +   A A+P Y+    +P +  +L
Sbjct: 128 VVDTRLVDIVADGFDAGIRVLQDVPRDMIATRFGPDMRFIAVASPDYVARNGKPKAPHDL 187

Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  I F    G L    +E     A+VD  +  P    + + +   +++  + G GIA
Sbjct: 188 ARHRCIRFRFESGALYRWDLEYRGKGASVD--VDGP----MTLGNLNLMVEAALAGIGIA 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            + D +  +   +  LV+++ +  +PSF  +   YP        L+ F   +    R+W
Sbjct: 242 WVSDQLAAEYLASGRLVQLLAE-WSPSFPGLCLYYPANRHPPTALRLFAQSV----REW 295


>gi|83716532|ref|YP_438306.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|257141335|ref|ZP_05589597.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650357|gb|ABC34421.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 314

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 25/299 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +  +RVF  VA +  F+HAA QL+LS S ++R +  LE+ +G+KL  R  R   LT
Sbjct: 1   MNHLFSAMRVFLKVAETHHFSHAANQLNLSPSLVTRYVGDLESHLGVKLLQRSTRKTVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +   L   +      S   +G L +     +    L G   E+   +P
Sbjct: 61  EVGVRYAEGCRALLANLHEIESRATHESSAIAGDLHVVALDSITSPELAGLFAEYQSRHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ +++   + ++D+     D  I     I S SL+ R L+   + A A+P YL     P
Sbjct: 121 DVSLRITQTDSEVDLLGGGFDVGIVADTMITSVSLVSRTLIHAPLVAVASPGYLLQAPPP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT--------VDRPIGEPRISCLQVNSYLSIM 232
               +L +H +I            + W           +D PI         VN+     
Sbjct: 181 ARPADLARHRIIGLA----AGARTYRWTGKNNAVDTTQIDTPI--------TVNNAPMQR 228

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           Q  + G GI LLP+Y+V ++     L R++ D  +     T+   YP      GK++AF
Sbjct: 229 QLVLAGGGIGLLPEYLVANDLRIGTLTRLLGDYRIANDGVTISLVYPGREFLPGKVRAF 287


>gi|91777469|ref|YP_552677.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690129|gb|ABE33327.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 299

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 134/294 (45%), Gaps = 22/294 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF+ AA +L L Q ++S+ I+ LE  +G +L  R  RGLT T+ G + +
Sbjct: 7   MEAFVTVVDAGSFSAAARRLKLGQPAVSKSIAQLEEHLGARLLLRSTRGLTPTDAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   + +  +  ++ESS   SG+LRI   +   +  +   LK FL  +P + I LI
Sbjct: 67  EHARRAIDEADQAEQAVRESSGGLSGRLRIGAAVTFARLHVLPALKTFLDQHPKLSIDLI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ ID+     D A+R+   +  S++  +++V         P Y      P +  +L 
Sbjct: 127 LDDRSIDLLEQGVDVALRM-GTLDDSTMTAKRIVRGRRLVVGTPQYFAQAGIPTTPADLS 185

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GI 241
           +H  I +     G+      +D   +A         R+S     S    M+  VLG  G+
Sbjct: 186 RHQAIVYSLRGGGESWSFSRDDGAEIAVAV----TGRVSV----SAAEGMRTAVLGHVGL 237

Query: 242 ALLPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+  +++   +P L       ++ +   PS  V+  +P     T K +AF  F+
Sbjct: 238 AVASEWMF--SPELADGTVQAVLTEWTLPSIDVWAVFPSGRMATTKARAFVAFV 289


>gi|13473402|ref|NP_104969.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14024151|dbj|BAB50755.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 293

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 11/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    AA +L L+ +++SR+I+ LE  +  KLF R   G  LT  
Sbjct: 1   MNWDDVRIFLAVARAGQILGAARRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +   +   +  ++   +  +       SG +RI      G   L   L E   L+ ++
Sbjct: 61  GERFLDIAERMEGEMIAARSTISGEGDDISGTVRIGAPDGFGVAFLARRLGELTALHREL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P +   L+  KLV   +  +A+  Y      P +
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPTE-GRLVAGKLVDYSLGLFASRAYADANGLPKT 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL +H LI +  DLI     D+    + D        +   ++S L   +    G+GI
Sbjct: 180 AAELGRHPLIGYVPDLIVSPSLDYAAEFSADWR------TSFAISSALGQAEAVRSGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290
            +L  ++ +  P LV +  D + P    Y+  Y E+++   +++    FI
Sbjct: 234 GILHTFVARSMPELVAV--DAVAPIRRAYWLVYHESVRPLRRIQIVAGFI 281


>gi|330809716|ref|YP_004354178.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377824|gb|AEA69174.1| Putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 293

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 20/289 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A + SF+ A   L +S S++ + ++ LE  +G++LF+R  R +TLT +G+      
Sbjct: 10  FVRAAETRSFSEAGRALGISSSAVGKSVARLEERLGVRLFHRSTRSITLTAEGTLFLERC 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  ++E  ++EL E+   P GKLR+  ++ L  +L+   L  F+  YP I++ L   +
Sbjct: 70  RRILCEVEAAELELSETRKAPRGKLRV--SLPLVADLVMPTLMAFMRRYPSIELDLDFSD 127

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +DI  +  D  IR  +P   S L+ R L    +    +P YL     P    +L +H 
Sbjct: 128 RLVDIIEEGFDAVIRTGEP-NDSRLMSRPLGAFKLVVVGSPRYLAEHGTPQVPTDLLRHA 186

Query: 191 LITFGDLIPKCMEDFNWLATVDRPI---GEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
            + +    P       W      PI   G+P +   + L  N+  +++       GIA +
Sbjct: 187 CLLYK--FPSTGRMQVW------PINGEGQPDLNLPATLVCNTTEALLYVVRDALGIACV 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD+ V+D   +  LV +++D      T    +P +     KL+ F +F+
Sbjct: 239 PDFTVRDAIASSELVTVLDDFNRHQSTFRMLWPSSKHLAPKLRVFIDFM 287


>gi|322831639|ref|YP_004211666.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166840|gb|ADW72539.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 298

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 145/299 (48%), Gaps = 19/299 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  SGSF+ AAEQL    S +SR +  LE ++GI L  R  R ++LT
Sbjct: 1   MRASSEELITFVTVVESGSFSRAAEQLGQDNSVVSRTLKRLEQKLGITLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +      ++ H++   + +L E+   P G LRI     +  +++   + EF   +P
Sbjct: 61  HEGERYFVRVQKILHEMAAAEDDLLENRDDPQGLLRIDAATPVILHVISPLVAEFTERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L     +I++     D AIR+ + ++ SSL  RKL+  +    A+P YLK    P
Sbjct: 121 KMSLALFSSESNINLIDHKVDVAIRVGE-LEDSSLRARKLMLSYRSVLASPDYLKKWGTP 179

Query: 181 LSIQELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            S  +L KH  + F +++     P    D   L         P IS     S  ++ + C
Sbjct: 180 QSADDLLKHRCLGFNEVVALNKWPLLCADGQQLTVT------PFISS---GSGETLRRLC 230

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G+GIA L D++  ++    +LV+++  D++  +  ++  Y      + +++ F +F+
Sbjct: 231 LQGNGIACLSDFMTDEDVARGDLVKLLVPDIMRIAMPLHAVYYSDQTVSTRIRCFIDFL 289


>gi|168463948|ref|ZP_02697865.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633239|gb|EDX51653.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 303

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 144/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++ F +F+
Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRTFIDFL 290


>gi|13940787|gb|AAK50453.1| unknown [Vibrio vulnificus]
          Length = 305

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LT+ G  L 
Sbjct: 11  IRSFVLIAQLGNFTKAAEALGVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTDAGKALF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                  H ++   +   +      G++RI      LG+ ++   + +F+  YP +++ L
Sbjct: 71  AQCETALHSIDQAVLAAVDDIEAVRGEIRINCVGGYLGEEVIAEVVGQFMQQYPQVRVDL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+ K ++ S  + RKL+ + M  YA+P YL     P   +EL
Sbjct: 131 DFSSHRVDLIEDEFDIAFRMGK-LEDSGFVARKLIDVEMGTYASPSYLATHGRPEHPKEL 189

Query: 187 DKHNLIT 193
           DKH  +T
Sbjct: 190 DKHACLT 196


>gi|326315466|ref|YP_004233138.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372302|gb|ADX44571.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 299

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 138/286 (48%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           ++VF  V  SGSF  AAE   L  SS++  +  LE  +  +L  R  R ++LT +G + L
Sbjct: 7   MQVFLRVVESGSFVRAAETSGLPASSVTSIVKRLEKHLQTRLLNRSTRSISLTPEGERYL 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           HR   E+   +  T+  L+ +  +P G+LR+     +   L+  +L +F   YPDI + +
Sbjct: 67  HRC-REILDLIYETESGLRPAE-RPRGRLRVDMPSGIAHALVLPHLGDFQQRYPDIHLLI 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            ++++ +D+  +  DC IR    +  S+LI R+L  +     AAP Y K    P S+++L
Sbjct: 125 GVNDRQVDLIQEGVDCVIRT-GALNDSTLIARRLGALRWITCAAPSYFKENGTPDSLEDL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  + +     +   + +++      +  P    L VN     +Q  + G G+  LP+
Sbjct: 184 QRHRAVHYFSSTTRGGGELHFVQD-GVSLAHPVPGTLAVNETGLYLQLGLNGVGLIQLPE 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +V+   D+  L  ++ D   P   V   YP     +  ++AF ++
Sbjct: 243 VLVRKHLDSGELREVLADKRPPPMPVSLLYPHRRFLSPAMQAFTDW 288


>gi|260462991|ref|ZP_05811194.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031112|gb|EEW32385.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 297

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 124/279 (44%), Gaps = 6/279 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  VAR  SFT AA QL +SQS++S  +  LE  +G++L  R  R ++ TE G +
Sbjct: 7   NELTAFLAVAREKSFTRAAAQLGVSQSALSHTVRALEERLGVRLLTRTTRSVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + R       ++E     L     KP+G +RI         +L   L +FL  +PDI+++
Sbjct: 67  MVRSVGPRLDEIEAELAALSALREKPAGTIRITAGEHSADVILWPALAKFLPDHPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+D    DI  +  D  +RL + +    +  R    + M    +P Y     +P + Q+
Sbjct: 127 IIVDYSLTDIVAERFDAGVRLGEQVARDMIAVRIGPDMRMAVVGSPAYFAIHPKPRTPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN I     +P     + W      R +       L  N+    M   + G G+A L
Sbjct: 187 LTNHNCINL--RLPTYGGLYAWEFEKAGRELKVRVEGQLVFNTSALRMNAVLAGLGLAYL 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
           P+  V     +  LVR++ D   P    +  YP   + T
Sbjct: 245 PEGQVTAHLADGRLVRVLADWCAPFPGYHLYYPSRRQAT 283


>gi|187930747|ref|YP_001901234.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187727637|gb|ACD28802.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 312

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 7/295 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+ G    
Sbjct: 7   MRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +++   ++  +      S    G LRI   +  G ++L   L  F  LYP++   + 
Sbjct: 67  QRCAQILLDIDEAESLATSRSQALVGGLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDVA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P   +++ 
Sbjct: 127 LSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQRAEDIA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246
           +H +I      P+   ++       + I  P    L V S   +M   VL   GIA+L  
Sbjct: 187 EHRVIAMWH--PQLRHEWEMSTADGQSISVPVQPSL-VTSNAELMHRAVLADMGIAILSS 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A + K
Sbjct: 244 YMARPDLESGRLVRLLPQYKLPQRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEVK 298


>gi|66767763|ref|YP_242525.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66573095|gb|AAY48505.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 304

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 134/287 (46%), Gaps = 14/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  VAR GSFT AA QL +SQS++S  +  LET +GI+L  R  R +++TE G +
Sbjct: 12  NDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAGMR 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    +++     L     KP+G +RI T        L   L + L  YPD++++
Sbjct: 72  LFDTVAPRLEEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSKVLPDYPDLKVE 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    DI  +  D  IRL   +    +         M   AAP Y  +   P    E
Sbjct: 132 ITIDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPRQRMAVVAAPSYFVHHTIPAVPAE 191

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +HN I     T G L+P   E       V R  G+        N   ++++  + G+G
Sbjct: 192 LAQHNCISLRLPTHGGLLPWDFEKDGREQKV-RVDGQ-----WTFNGSSAMLRAALAGAG 245

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           +A LP+ +V D+     L R+++D   P    Y  YP   +++  LK
Sbjct: 246 LAFLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALK 292


>gi|320323309|gb|EFW79397.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327506|gb|EFW83518.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 302

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEIEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L  H+ + +G           W   V    G+P I      ++ N+   +    V G G
Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP +IV     + +LVR+++D+     T+   YP+  + +  ++AF  F+
Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287


>gi|190574983|ref|YP_001972828.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|254521569|ref|ZP_05133624.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
 gi|190012905|emb|CAQ46537.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|219719160|gb|EED37685.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
          Length = 330

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R +  + L Q  L   L +FL  YP ++
Sbjct: 63  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGVVRASVPVSLAQMQLPKLLPKFLEQYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +DI  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 123 LQLNISNRRVDIINEGYDVALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 182

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +EL +H  ++   D   +  E       V R   +PR++        S+++    G GI
Sbjct: 183 PEELTQHVTLSISEDEARQRWELHGPEGEVRRVDLQPRVAGFDFPLLQSMVKD---GFGI 239

Query: 242 ALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
            +LP+ +  D    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 240 TMLPETVCADA---VRNGELEVVLPDWSLPQGVCHAVFASRRGLLPAVRVFI 288


>gi|238756247|ref|ZP_04617564.1| hypothetical protein yruck0001_34410 [Yersinia ruckeri ATCC 29473]
 gi|238705550|gb|EEP97950.1| hypothetical protein yruck0001_34410 [Yersinia ruckeri ATCC 29473]
          Length = 323

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 149/302 (49%), Gaps = 36/302 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +   +   G  + AA QL++S S++S+ +S LE+++G  L  R  R LTLT+ G+ L
Sbjct: 22  QLEILVKIIECGGLSEAATQLNISPSAVSKSLSHLESQLGTMLLKRTTRSLTLTDAGTYL 81

Query: 67  HRVTSEVYHKLETTQIELQES-------SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
                  YH+     ++  ES         +P G+LR+  +I  G + L   +  +   Y
Sbjct: 82  -------YHRATKLLLDFDESLNTTAGFYNRPQGELRLTCSIAFGYSHLITLVNNYRTRY 134

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           PD+ + + L++  ++++    D AIR+   P  + SL  RKL TIH    A+P YLK   
Sbjct: 135 PDVDLYIDLNDNFVNLNESNFDIAIRVASTPPDNYSL--RKLSTIHWAYCASPEYLKKMG 192

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P S+Q+L  H  + +  L P  ++D +   +V   + + R S +Q NS L +++  +  
Sbjct: 193 IPTSVQQLTNHQCLLYPGLTP-ILKDTDEAGSVH--LLKLR-SPIQANSSLVLLKAVLEH 248

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITP----------SFTVYFCYPEALKNTGKLKAFRN 288
            GIA LP Y++ D      I    ITP          +  +Y  Y  +  +  K+++F +
Sbjct: 249 QGIAYLPTYLLGD-----AIQRGEITPLALDGEITHATHGLYALYFPSRYSNPKVRSFID 303

Query: 289 FI 290
           F+
Sbjct: 304 FL 305


>gi|320324476|gb|EFW80553.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 301

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 11/255 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+
Sbjct: 4   FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    EV   +  ++   +++   PSG LRI   +  G  +L   L  F L +P++++
Sbjct: 64  AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFPEVKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L N+ +D+  +  D AIRL    QSS LI R +    +   AAP YL     P   +
Sbjct: 124 DLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARFMQDYTLTICAAPSYLARHGTPAHPE 183

Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           +L  HN + F    P   E       W  T   P GE  +     +  N+   + Q    
Sbjct: 184 DLGAHNCLAFS--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAACA 239

Query: 238 GSGIALLPDYIVKDN 252
           G G+ +LPD +V+ +
Sbjct: 240 GMGVVMLPDALVQRD 254


>gi|319780964|ref|YP_004140440.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166852|gb|ADV10390.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 293

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 134/290 (46%), Gaps = 11/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    AA++L L+ +++SR+I+ LE  +  KLF R   G  LT  
Sbjct: 1   MNWDDVRIFLAVARAGQILGAAKRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +   +   +   +   +  +       SG +RI      G   L   L     L+ ++
Sbjct: 61  GERFLDIAERMEGDMIAARSTISGEGDDVSGTVRIGAPDGFGVAFLAKRLGALTALHREL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P +   L+  KLV   +  +A+  Y+     P +
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPTE-GRLVAGKLVDYSLGLFASRAYVDANGLPKT 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL +H LI +  DLI     D+    + D        +   ++S L   +    G+GI
Sbjct: 180 AAELGQHTLIGYVPDLIVSPSLDYAAEFSADWR------TSFAISSALGQAEAVRSGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290
            +L  ++ +  P LV +  DV+ P    Y+  Y E+++   +++   +FI
Sbjct: 234 GILHTFVARSMPELVPV--DVVAPIRRAYWLVYHESVRPLRRVQIVASFI 281


>gi|161525152|ref|YP_001580164.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160342581|gb|ABX15667.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 310

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 13/281 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA +G FT AAE+L+L+ S++S+ ++ LE  +G+ LF R  R L LT+ G   +   
Sbjct: 21  FVCVADAGGFTAAAERLNLTNSAVSKSVARLERRLGVVLFERTTRKLVLTDAGRAFYETC 80

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  +L   +  L     +P G +RIA     G+  +   L  F   YPD++  L+  +
Sbjct: 81  TRILAELAEAEAVLAAQQREPVGTVRIALPASFGRLCVVPVLVRFSEQYPDVRPHLLFTD 140

Query: 131 KDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D++ +  D A+R+  P     SL +R L    +   AAP YL+    P ++ +L +H
Sbjct: 141 RFVDLAEEGIDLAVRIGGPPGLPPSLGRRFLGRERLIFCAAPAYLEKNGIPQTVDDLQEH 200

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245
             I +G   P   +     A  D  + +    PRI      + L+ ++    G G+A L 
Sbjct: 201 ACIVYGR--PDGAQSLWSYAAADGQVEQRVVRPRIVAGDAEAQLAFVRA---GLGVAQLA 255

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            ++V+D+     LV I+++  T    +   +P A + T K+
Sbjct: 256 TWLVRDDLKAGRLVAILDEAATDGLPLSLIWPVARQLTPKI 296


>gi|295097113|emb|CBK86203.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 299

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 134/289 (46%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE L L + S+SRQI  LE  +G +L +R  R ++LT+ G   +
Sbjct: 7   MQLFLRVAELESFSRAAETLSLPKGSVSRQIQALENALGTQLLHRTTRRVSLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+             SG+LR+   + + +N++   L  FL  +P I+++L 
Sbjct: 67  ERAKDLLMNLDELDGMFLHDPSTISGRLRVDMPVAIARNVVIPKLPAFLQQFPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   ++ S LI R L  + +   A+P YL     P ++ +L 
Sbjct: 127 SSDRLVDVIREGFDCVVRVGN-LKDSGLIARPLGKLSVINCASPDYLTRFGYPETLDDLA 185

Query: 188 KHNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H LI +   +   P+  E +N  AT     G      L VNS  +    C+ G GI  +
Sbjct: 186 SHALIHYSATLGTRPQGFEYYNGSATQWVKTG----GVLTVNSTETYQAACIAGLGIIQV 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V+D      LV I+         V   YP     + ++  F  ++
Sbjct: 242 PRVGVRDVLRTKKLVEILPQYRAEPMPVSLIYPHRRNLSRRVHVFMEWL 290


>gi|160899140|ref|YP_001564722.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364724|gb|ABX36337.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 300

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 134/293 (45%), Gaps = 13/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +ARSGS   AA QL +  +++SR+I  LE ++G  LF R A     TE 
Sbjct: 1   MDWDHLRFFGELARSGSMAAAARQLGVEHTTVSRRIQALEKQLGAVLFEREAGQWRPTEA 60

Query: 63  GSKLHRVTSEVYHK---LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G +L  V   +      LE   +  + +S  PSG +R+  T   G  LL   L      +
Sbjct: 61  GRQLLGVADAMQRAASGLERMPLAAESTSQGPSGLVRVGATEGFGTQLLAPQLAALTQRH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I L+   + + +S   AD  I L +P + S+++  KL    +  Y    YL   R 
Sbjct: 121 PLLSIDLLALPRLLHLSRREADIVISLERPTRGSAVVT-KLTDYRLFLYGQREYL--ARR 177

Query: 180 PL--SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           PL    ++L  H+ I + D +    E    L+T    + +P     +  S  +  +    
Sbjct: 178 PLVARTEDLRHHSFIHYVDDLLFTRE-LQLLST----LFQPERFAFRSTSITAQYEAVRA 232

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+G+A+LP +I   +P L R++      + T +   P   +   +++A   F+
Sbjct: 233 GAGLAVLPAFIADRDPVLSRVLPAEACFTRTFWMSMPSDARQVQRIEAVWGFL 285


>gi|114773248|ref|ZP_01450483.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114546367|gb|EAU49276.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
          Length = 304

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 138/297 (46%), Gaps = 26/297 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D + +F  V  +GSF+  A+ L ++ S +S++I+ LE  + ++L YR  R L+LT
Sbjct: 1   MQAKADDIFLFVQVVDAGSFSKVAQLLEITNSVVSKRIARLEKALNMQLLYRSTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQES-------SVKPSGKLRIATTIDLGQNLLQGNLK 113
           + G  L       Y K +  Q  LQE+       S   SGK++I       +  L   + 
Sbjct: 61  DGGKTL-------YAKAKVAQDALQEAHDAVCGYSDSISGKIKITVPSVSARLTLTTAIA 113

Query: 114 EFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
           EF  LY ++ I++I+D++  ++  +  D AIR    ++ SSL+ R+LV  H    A P Y
Sbjct: 114 EFCRLYKEVTIEMIIDDRFANLIEEGYDLAIR-TGYLEDSSLLARRLVDSHWVIVATPQY 172

Query: 174 LKNCREPLSIQELDKHNLIT--FGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLS 230
           LK    P S  EL  HN +T  + +  P      +W   + +    E        N   +
Sbjct: 173 LKQQGIPESSNELKFHNCLTYKYNEAQPN-----HWRFLSAEGEYTEVVQGNFVANDLNA 227

Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           + Q  + G GIA LP  +V D   N  L +++ D       +Y  YP+      KLK
Sbjct: 228 LHQAVIAGLGIAYLPRVLVYDDLQNGELTQLLSDQTAKRVGIYAVYPKMRSPDTKLK 284


>gi|330897918|gb|EGH29337.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 298

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 136/287 (47%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA + SFT A ++L +S S I + I  LE  +G++LF+R  R + LT +GS     
Sbjct: 9   VFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEGSIFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LE  ++EL  +   P G+LRI  ++ L   L+   + +F+  YPDI++ +   
Sbjct: 69  CRRILSELEAAEMELSNARDLPKGRLRI--SLPLVSGLVMPVIIDFMRTYPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P    +L +H
Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSKRMGSFQLRIVGAPDYFARHGTPRHPGDLSQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +      P      +W   + R  G   +   Q    N+   ++     G GIA LPD
Sbjct: 186 ACLLHK--FPSTGRFEHW--PLRREAGVDDLELPQAMVCNTTEILVDVARAGLGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++     N  L+ +++D    + T    +P +   + +L+ F +F+
Sbjct: 242 FMILSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288


>gi|319781364|ref|YP_004140840.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167252|gb|ADV10790.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 305

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 135/305 (44%), Gaps = 41/305 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  V  +GSFT AA +L ++++ +S QI  LE E+G  L  R  R +T TE+G  
Sbjct: 8   NRLAYFTTVMETGSFTAAANRLGVAKAVVSHQIGKLEEELGATLLQRTTRRVTPTEEGRL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  + E    E+   +V+PSG LR+   +D G  ++   +  +L  YP ++++
Sbjct: 68  FYDRAMIILREAEAAYGEISRGTVEPSGTLRLTAPLDYGTKMVAPVMAAYLRTYPQMRVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            I D+   ++  +  D  IR+   +  SS   R+L TI     A+P +  +         
Sbjct: 128 AIFDDAVSNLVDEQIDLGIRVGW-LTDSSNQARRLGTIRQIVVASPGFAASLPP------ 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGE---------------PRISCLQVNSYL 229
                     DL P+      W+     R IG+               P + C +  + L
Sbjct: 181 ----------DLTPRQARSLAWVGNTQLRGIGQWLFSRDGETVLTELNPVLMCDKSPAAL 230

Query: 230 SIMQYCVL-GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +    CVL G G+ + PDY V D+     LV +  D   PS  ++  +P A     K++ 
Sbjct: 231 A----CVLVGIGLGVFPDYSVSDDIAEGRLVPVFADWSLPSGGIHAVFPPARFRPAKVRT 286

Query: 286 FRNFI 290
           F + +
Sbjct: 287 FVDLL 291


>gi|257482701|ref|ZP_05636742.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330986619|gb|EGH84722.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012234|gb|EGH92290.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 302

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L  H+ + +G           W   V    G+P I      ++ N+   +    V G G
Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP +IV     + +LVR+++D+     T+   YP+  + +  ++AF  F+
Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287


>gi|86159924|ref|YP_466709.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776435|gb|ABC83272.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 319

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 25/296 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  G F+ AA  L  + S++++ ++ LE  +G +L  R  R + LT +G   
Sbjct: 11  EMEAFATVAELGGFSAAARALGRTPSALNKLVTRLEARLGARLLTRTTRAVRLTAEGEAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           HR    +  ++E  ++E    +  P G++R+   +  G + L   +  FL   P I + +
Sbjct: 71  HRRAMRILAEVEDAEVEAAGGA--PRGRVRVNANLPFGVHCLLPRVPAFLQANPGITLDV 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +D+    AD AIR+  P+++S L+ RKL    +   A+P YL     P +  +L
Sbjct: 129 VLSDEVVDLVERRADVAIRV-GPLRASRLLARKLGESPVAVVASPAYLARRGTPRTPADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIA 242
           D H  I F     + ++D+ +L       GE    P    ++     +  Q  + G+G+A
Sbjct: 188 DAHERIGF--TFARALDDWPFLRG-----GEALRVPVRGAVRAGDGETARQLALAGAGLA 240

Query: 243 LLPDYIVK---DNPNLVRIME-----DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  + V    +   LVR++E     DV+       F  P A     +++AF +F+
Sbjct: 241 RLALFQVAADLEAGRLVRVLEAFEPGDVL--EIHALFLGP-AGSVPARVRAFVDFV 293


>gi|71906775|ref|YP_284362.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB]
 gi|71846396|gb|AAZ45892.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 306

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 139/289 (48%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++ + GS   AA +L L+  ++SR++S LE  +G++L  R  R ++LT +G   
Sbjct: 4   ELAFFSLLVQQGSLVQAARELGLTGPAVSRRLSQLEQRLGVRLLARTTRRMSLTPEGELY 63

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              +  +  ++E  +  L  +  +P G LRI  T   G+  L   + EF+  +P + IQL
Sbjct: 64  LAESRRILGEIEALEQALNRTRAEPRGLLRIHATFGFGRRQLAPAVSEFVRQHPAVDIQL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +       D AIR  +P + + ++ R++ +   + +A+P YL    +PL++ EL
Sbjct: 124 TLSDQPVTPGEQGFDIAIRFGEPPE-ARVVARQIASNQRYLFASPAYLARRGQPLTLDEL 182

Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
             H+ I    +I +    F  W     +     ++S  L  N     + + + G GI L 
Sbjct: 183 VNHDCI----VIREGTGAFGTWTLCSGKQCRNIKVSGKLSSNHGEVAVDWALDGHGILLR 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +    +     LVR++ +       +Y  YP+ L  + K++ F +F+
Sbjct: 239 SLWDTATDLRAGRLVRVLPEWSGSPADIYALYPQRLNLSAKVRVFLDFL 287


>gi|16262743|ref|NP_435536.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|14523371|gb|AAK64948.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 295

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 123/272 (45%), Gaps = 11/272 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   SFT AA +L  SQSS+S  I  LE  +G++L  R  R +  TE G +L 
Sbjct: 9   LLAFLAVAEEESFTKAAARLGTSQSSLSLIIKRLEARLGVRLLTRTTRSVAPTEAGEQLF 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +  +  +E     L E   KP+G  RI         +L   L  FLL YPDI+++L+
Sbjct: 69  STLAPAFGTIEAQLSALSEFRDKPAGNFRITAGQHSIDTILWPKLSAFLLAYPDIKVELV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++   DI  +  D  +RL   ++   +  R      M    AP  L++   P + QEL 
Sbjct: 129 AESALTDIVAERFDAGVRLGDQVEKDMIAVRIGPPARMIVVGAPSCLRDRPPPKTPQELT 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H  I     +P     + W    +R   E R+     +  N    I++  + G G+  +
Sbjct: 189 THRCINL--RLPSYGGFYAW--EFERDGHEVRVRVDGQVAFNGVPQIVKAALDGFGLTYV 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            + +V++   N  LV+I++D  TP F  Y  Y
Sbjct: 245 HEDVVREYLKNGRLVQILDD-WTPPFPGYHLY 275


>gi|317401295|gb|EFV81935.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 296

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 139/304 (45%), Gaps = 29/304 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  VG++L  R  R + LT
Sbjct: 1   MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERSVGMRLLNRSTRKIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +  +      +L + +V+P G+LRI+    L Q  L   ++EF   +P
Sbjct: 61  EAGAIYFERCRHIVEEARIAHDQLLDMAVQPKGRLRISLPTSLAQLFLPAVIREFREQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI+    L  + ID   +  D  +R  ++P   SSLI RK+V +    YA+P YL    E
Sbjct: 121 DIECDFDLSMRPIDPISNPFDLILRFGQQP--DSSLISRKIVLMAHQLYASPDYLARHGE 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMED---FNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           P    +L  H  +         M D   F  L + D      ++  +QV+  LS     +
Sbjct: 179 PRVPADLTHHECLR------PTMRDESSFWMLHSGD------KVERVQVSGRLSANNVGM 226

Query: 237 L----GSGIALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L    G G+ + P  +            LVR++ D       ++   P  +    K KAF
Sbjct: 227 LGRLAGQGLGITPLLVFDAMERAIKQAGLVRVLPDWSLTPLPLFALLPSRML-PAKTKAF 285

Query: 287 RNFI 290
            +FI
Sbjct: 286 LDFI 289


>gi|167719002|ref|ZP_02402238.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei DM98]
          Length = 299

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S V PSG LR      +G+ ++   L EFL  YP I ++
Sbjct: 65  LYERCLRLIADVEETENLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H  + +       +  + W+    V R     R++   VNS  + +  C+ G G   
Sbjct: 184 LERHRPVNYASPSNGRVAPWEWVEGDEVKRIALRARVT---VNSAEAYIACCLAGLGPIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ D       +   YP     + + + F  ++
Sbjct: 241 IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290


>gi|77461122|ref|YP_350629.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385125|gb|ABA76638.1| putative LysR-family transcriptional regulatory protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 303

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 12/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A  GSFT AA+   ++ +++SR +S +E  +G++LF R  R + LT+ G + +
Sbjct: 13  IELFCLAAECGSFTGAAQAASVTPAAVSRSVSRMEERLGVRLFARTTRSVKLTDSGRRYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+   +L   Q E+     +PSG LRI+       + +   L  F   +P +++ + 
Sbjct: 73  EECSQALAQLVEAQREVMGQQQEPSGTLRISIPTTYAHHRILPLLPAFRARFPQVKVDMH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N++ID   +  D AIR+R  I  S LI R L    +   A+P YLK    P ++++L+
Sbjct: 133 ISNRNIDFVGEGYDMAIRVRA-IPDSGLIARHLEDAALVMVASPDYLKRAGTPQTLEDLE 191

Query: 188 KHNLITFGDLIPKCMEDFNWL----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I +   +P       WL     T    + E    C   +  L  +     G+G+  
Sbjct: 192 QHECIQYE--LPSNGRRITWLFYDEETPREILAEGNFCC--SDDVLGGVTLARHGAGLFQ 247

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +IV+    + +L+ +++     S      YP+      +++AF +F+
Sbjct: 248 TYRFIVEKELADGSLIEVLKPYSGRSRPFTLLYPQNRHMPLRVRAFIDFL 297


>gi|320158060|ref|YP_004190438.1| transcriptional regulator [Vibrio vulnificus MO6-24/O]
 gi|319933372|gb|ADV88235.1| transcriptional regulator [Vibrio vulnificus MO6-24/O]
          Length = 305

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LT+ G  L 
Sbjct: 11  IRSFVLIAQLGNFTKAAEALGVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTDAGKALF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                  H ++   +   +      G++RI      LG+ ++   + +F+  YP +++ L
Sbjct: 71  AQCETALHSIDQAVLAAVDDIEAVRGEIRINCVGGYLGEEVIAEVVGQFMQQYPQVRVDL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+ K ++ S  + RKL+ + M  YA+P YL     P   +EL
Sbjct: 131 DFSSHRVDLIEDEFDIAFRMGK-LEDSGFVARKLIDVEMGTYASPSYLATHGRPEHPKEL 189

Query: 187 DKHNLIT 193
           DKH  +T
Sbjct: 190 DKHACLT 196


>gi|189350105|ref|YP_001945733.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189334127|dbj|BAG43197.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 304

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 13/281 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA +G FT AAE+L+L+ S++S+ ++ LE  +G+ LF R  R L LT+ G   +   
Sbjct: 15  FVCVADAGGFTAAAERLNLTNSAVSKSVARLERRLGVVLFERTTRKLVLTDAGRAFYETC 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  +L   +  L     +P G +RIA     G+  +   L  F   YPD++  L+  +
Sbjct: 75  TRILAELAEAEAVLAAQQREPVGTVRIALPASFGRLCVVPVLVRFSEQYPDVRPHLLFTD 134

Query: 131 KDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D++ +  D A+R+  P     SL +R L    +   AAP YL+    P ++ +L +H
Sbjct: 135 RFVDLAEEGIDLAVRIGGPPGLPPSLGRRFLGRERLIFCAAPAYLEKNGIPQTVDDLQEH 194

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245
             I +G   P   +     A  D  + +    PRI      + L+ ++    G G+A L 
Sbjct: 195 ACIVYGR--PDGAQSLWSYAAADGQVEQRVVRPRIVAGDAEAQLAFVRA---GLGVAQLA 249

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            ++V+D+     LV I+++  T    +   +P A + T K+
Sbjct: 250 TWLVRDDLKAGRLVAILDEAATDGLPLSLIWPVARQLTPKI 290


>gi|83646624|ref|YP_435059.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634667|gb|ABC30634.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 299

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 142/306 (46%), Gaps = 33/306 (10%)

Query: 6   DKLRVFYVVAR---SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   V A+   +GSF  AA  L LS S +S  ISGLET +G+ L YR  R L+LT +
Sbjct: 3   DELRALAVFAKTVEAGSFRAAASALSLSPSVVSHHISGLETRLGVALLYRSTRRLSLTSE 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +    E     + E + +P+GKL I     L +     ++  F L +P  
Sbjct: 63  GERLFDHAKTMLAAAEAGLNAIIEQAAEPTGKLTITAPAVLARGPFTADVAAFALAFP-- 120

Query: 123 QIQLILDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I L ++  DI  D+  D  D AIR+ + +  SSL  +KL  +     AAP YLKN   P
Sbjct: 121 KISLFINYSDIRQDLIRDGIDLAIRIGE-MADSSLKSKKLFDLTRRLVAAPGYLKNRPTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQ 233
               +L +   I       K   ++  L +     GE       PRI+   V+S  ++ Q
Sbjct: 180 NHPADLLQWEWIGL-----KMRPNYKLLHSAS---GERQRIDFTPRIT---VDSIDAVCQ 228

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFI 290
               G G+A  P ++V+D+    R+ E +      +  VY  +P    N  +      FI
Sbjct: 229 LAAAGLGLATPPAFLVEDDLRNGRLCEPLPAWRVDTLGVYAVWP---PNAARESLTYRFI 285

Query: 291 -FLKAR 295
            FL++R
Sbjct: 286 QFLQSR 291


>gi|327189334|gb|EGE56502.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 297

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 134/278 (48%), Gaps = 16/278 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VAR  SFT AA +L +SQS++S  I GLE  +G++L  R  R ++ TE G +
Sbjct: 7   DDLIAFLAVAREQSFTKAAAKLGVSQSALSHTIRGLEARLGLRLLTRTTRSVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       + ++E++   L     KP+G +RI        ++L   L+ FL  YPD++++
Sbjct: 67  LLVSIGPRFDEIESSLAALSAFRDKPAGTIRINAGEHAANSVLWPALERFLPEYPDVRVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+D    DI  +  D  +RL + +    +  R    + M    AP Y  +  +PL+  +
Sbjct: 127 IIVDYGLTDIVAERYDAGVRLGEQVAKDMVAVRIGPDMRMAVVGAPTYFDSRPKPLTPHD 186

Query: 186 LDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           L  HN     L T+G +       + W    D      R+   L  N+    ++  + G+
Sbjct: 187 LTDHNCINLRLATYGGV-------YVWEFEKDGRELNVRVEGQLVFNNIALRLKAALAGA 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           G+A LP+  V+   +N  LVR++ED   P    +  YP
Sbjct: 240 GLAYLPEDAVQAHLENGLLVRVLEDWCPPFPGYHLYYP 277


>gi|226940013|ref|YP_002795086.1| transcription regulator protein [Laribacter hongkongensis HLHK9]
 gi|226714939|gb|ACO74077.1| Probable transcription regulator protein [Laribacter hongkongensis
           HLHK9]
          Length = 305

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 130/274 (47%), Gaps = 11/274 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LRVF  +  +GSF+ AAE+L LS +  S+ +  LE ++G +LF R  R ++LTE G   
Sbjct: 6   SLRVFQTIGETGSFSAAAERLGLSAAMASKHVHALEQQLGTRLFQRTTRRVSLTEAGQDY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  + V  +LE       + SV   G++R++  I  G  +L G L      YP ++++L
Sbjct: 66  ARRIALVLAQLEEADAAAMQQSVDIRGRVRLSAPISFGMRVLGGWLAGLAARYPQLEVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D A+R+     +  ++ R L    +   A+P YL+    P    +L
Sbjct: 126 ELSDRQVDLIDEGFDLALRITTTPLADGIVARPLARFDLLLCASPAYLEQAGTPQVPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +H  + +  L P+  +    LA       P+  P    L  N+   ++Q    G GI  
Sbjct: 186 SQHACLRY-SLYPQGTDWRLRLADGSECRVPVSGP----LTANNGDVLVQAACTGMGIIY 240

Query: 244 LPDYIVKDN--PNLVRIMEDVI-TPSFTVYFCYP 274
            P ++V+ +     +R++ D +      VY  YP
Sbjct: 241 QPRFLVETHLQQGTLRLLFDSLPVRQAEVYAVYP 274


>gi|332184959|ref|ZP_08386708.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
 gi|332014683|gb|EGI56739.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
          Length = 318

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 137/298 (45%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  LR F  VA   SF+ AAEQL +S S++S+ I GLE  +GI+L +R  R ++LTE G
Sbjct: 6   EFGALRAFAAVAEQRSFSRAAEQLGVSSSALSQLIRGLEERLGIRLLHRTTRSVSLTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           + L    +     L T  +E   ++ K P+G +R+          +   L      +PDI
Sbjct: 66  AALLGDIAPAIDSL-TGALEQARTTAKLPAGTVRLHCFHAAADRFVVPILPRLARAFPDI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L +D+  +DI     D AIR+ + I+   +  R    I   A AAP YL     P +
Sbjct: 125 TLDLTIDDTVVDIVGSGYDAAIRIGEVIERDMVALRLGEDIRQLAVAAPAYLAEHGVPQT 184

Query: 183 IQELDKHNLITF---GDLIPKCMEDF---NWLA-TVDRPIGEPRISCLQVNSYLSIMQYC 235
            ++L +H  I +   G   P   E F   +W +  V+ P        L  +S   ++   
Sbjct: 185 PKDLLQHRCIRWRWPGQPGPYAWEFFENGHWFSVAVEGP--------LITSSRAVMVDAA 236

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GIA L +  V    D   LV ++ D   P    Y CYP+  +    L+A  + I
Sbjct: 237 LAGIGIAFLKEESVVDAFDRGALVALLADWSVPFPGYYLCYPQQRQMAPALRAVIDMI 294


>gi|289626322|ref|ZP_06459276.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646584|ref|ZP_06477927.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868296|gb|EGH03005.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 301

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 117/255 (45%), Gaps = 11/255 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+
Sbjct: 4   FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    EV   +  ++   +++   PSG LRI   +  G  +L   L  F L +P++++
Sbjct: 64  AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFPEVKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L N+ +D+  +  D AIRL    QSS LI R +    +   AAP YL     P    
Sbjct: 124 DLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARPMQDYTLTICAAPSYLARHGAPAHPG 183

Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           +L  HN + F    P   E       W  T   P GE  +     +  N+   + Q    
Sbjct: 184 DLGAHNCLAFS--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAACA 239

Query: 238 GSGIALLPDYIVKDN 252
           G G+ +LPD +V+ +
Sbjct: 240 GMGVVMLPDALVQRD 254


>gi|7188597|gb|AAF37819.1|AF190471_1 CrgA [Neisseria meningitidis]
          Length = 299

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRGQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S +EL  H  + F +  P  +   N  A +D      +IS     S   I++  C+ G 
Sbjct: 180 QSAEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++V ++       P L     D   P   VY  Y +   N  +L+ F +F+
Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289


>gi|302186316|ref|ZP_07262989.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 301

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 15/302 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RV+  V  +GS T AA+   +S + +S  +  LE  +G+ L  R  R   LTE G+
Sbjct: 4   FQAMRVYVKVVEAGSLTAAAQACSISTTMVSNHLRALEERLGVSLLQRTTRRQRLTEFGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    EV   +  ++   +++   P+G LRI   +  G  +L   L EF   +P++++
Sbjct: 64  AYYERCLEVLGLVAESEQLAEQAQGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPEVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L N+ +D+  +  D AIRL    +SS LI R L    +   AAP YL     P    
Sbjct: 124 DLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTPTHPD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV------NSYLSIMQYCVLG 238
           +L  HN + F        +++    T  R  G      ++V      N+   + Q    G
Sbjct: 184 DLRAHNCLAFAY---PAGDEWRTAGTQWRMTGAEGEVLVEVSGSMVANTSAGLYQAARAG 240

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI +LPD +V+    +  LV +  D   P    +  Y   +++  +L   R+F+     
Sbjct: 241 LGIVMLPDALVQRDLQDGRLVALFPDYHLPRRPTHLLY---VQDRYRLPKLRSFVEYATG 297

Query: 296 DW 297
            W
Sbjct: 298 LW 299


>gi|260550354|ref|ZP_05824566.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406666|gb|EEX00147.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 299

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 140/296 (47%), Gaps = 13/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EIRLQLIVSNRRVDVINEGIDVALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237
             S  EL  H +++  +   + ++    L   D  + + ++S   +  N Y+ + Q    
Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDSQLKKVKVSPTVMGTNLYM-LAQLASQ 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GIALLP+   +D   +  LV+I+ D        +  YP      G L A R FI
Sbjct: 237 NCGIALLPETAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289


>gi|217978813|ref|YP_002362960.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
 gi|217504189|gb|ACK51598.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 300

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD      + V   V  +GSF  A E+L LS S +SR I+ LE  +G++L  R  R L
Sbjct: 1   MTFDARLLSGVGVLIAVVETGSFVRAGEKLGLSDSGVSRAIARLEARLGVRLLDRTTRAL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G + H   + +  +L     EL  +     G+LR+       +  L   L  FL 
Sbjct: 61  RLTDDGRRFHAEATPLLLQLADAAAELGAARANVRGRLRVEVDPFFSRLALAPRLGAFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPD+ ++LI      D+     D AIR  +P ++  LI RKL+   +   A+P Y++  
Sbjct: 121 RYPDLTLELITTEAPGDLVARGFDLAIRFGEP-RAGGLIARKLLDTRILTVASPRYIERN 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
             P   ++L +H  I + D  P     F W     R I    +   L V+   +++Q   
Sbjct: 180 GRPAQPRDLVRHRCIQYRD--PASGRPFAWEFRKGRKIVPVEVEGPLTVSDVGTMLQAAT 237

Query: 237 LGSGIA---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G G+A    L    + ++  LV +  D    +F ++  YP   + + +++A  +F
Sbjct: 238 AGVGVAQVMALGSEALLESGALVELFPDWPDETFPLHAFYPSRHQPSLRVRALIDF 293


>gi|169795521|ref|YP_001713314.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213158538|ref|YP_002319836.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483008|ref|YP_002325213.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301345527|ref|ZP_07226268.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301513178|ref|ZP_07238415.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301597159|ref|ZP_07242167.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332850715|ref|ZP_08432962.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332866984|ref|ZP_08437301.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169148448|emb|CAM86314.1| putative HTH-type transcriptional regulator (LysR family)
           [Acinetobacter baumannii AYE]
 gi|213057698|gb|ACJ42600.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986362|gb|ACJ56661.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332730552|gb|EGJ61868.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332734313|gb|EGJ65441.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 300

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 13/222 (5%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA   S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYERMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR +  + +S+LI R L    +   A+P YLK  
Sbjct: 121 KYPDIQIEINISNRNVDLIAEGFDLAIR-QGQLPNSTLIARPLEQAPLKLVASPAYLKRM 179

Query: 178 REPLSIQELDKHNLITF-----GDLIPKCM----EDFNWLAT 210
             P +++EL  H  I F     G + P  +    E+  W+ T
Sbjct: 180 GIPKNLEELKHHQCIAFELPSSGKITPWFLKNDNEEIQWIPT 221


>gi|84500441|ref|ZP_00998690.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84391394|gb|EAQ03726.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 307

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 128/275 (46%), Gaps = 16/275 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SFDW++ R F   A  GS + AA +L  +Q ++ RQ++ LE ++G+ LF R  RGL LTE
Sbjct: 7   SFDWNQARAFLATAELGSLSAAARELGQTQPTLGRQVAALEDQLGVALFDRAGRGLILTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     E+        +     S    G + I  +      LL   + E   + P+
Sbjct: 67  AGRELLSHVREMAEAAARVPLTASGQSQALRGTVGITASDVFSVTLLPPIIAELSRIAPE 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+++  N   D+S   AD AIR  +P +  +L  R L     H YAAP YL     P 
Sbjct: 127 IEIEVVASNDLRDLSRREADIAIRHVRPTE-PALTARLLGEGTGHLYAAPAYLDRRGRPA 185

Query: 182 SIQELDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S  +L  H+ + F D+  + + + +F        P+    I   + ++ L++ +    G 
Sbjct: 186 SRSDLATHDFVGFLDVNRMGRTLGEFGI------PVAARNIRY-RTDNGLAMWEMVRAGL 238

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
           GI ++   +    P++     +++ P   V F YP
Sbjct: 239 GIGVMTADLGLTTPDV-----ELLFPR-EVAFRYP 267


>gi|45440817|ref|NP_992356.1| transcriptional regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51595551|ref|YP_069742.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 32953]
 gi|108807083|ref|YP_650999.1| LysR family transcriptional regulator [Yersinia pestis Antiqua]
 gi|108812982|ref|YP_648749.1| LysR family transcriptional regulator [Yersinia pestis Nepal516]
 gi|153950777|ref|YP_001401781.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|166211613|ref|ZP_02237648.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400255|ref|ZP_02305768.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167424115|ref|ZP_02315868.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170025127|ref|YP_001721632.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|186894607|ref|YP_001871719.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|229894059|ref|ZP_04509245.1| Transcriptional regulator [Yersinia pestis Pestoides A]
 gi|229903420|ref|ZP_04518533.1| Transcriptional regulator [Yersinia pestis Nepal516]
 gi|294503179|ref|YP_003567241.1| Transcriptional regulator [Yersinia pestis Z176003]
 gi|16611834|gb|AAL27377.1|AF426171_8 putative transcriptional regulator [Yersinia pestis]
 gi|45435675|gb|AAS61233.1| Transcriptional regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588833|emb|CAH20447.1| putative transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776630|gb|ABG19149.1| transcriptional regulator, LysR family [Yersinia pestis Nepal516]
 gi|108778996|gb|ABG13054.1| putative transcriptional regulator, LysR family [Yersinia pestis
           Antiqua]
 gi|152962272|gb|ABS49733.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|166207384|gb|EDR51864.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167050204|gb|EDR61612.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167056964|gb|EDR66727.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169751661|gb|ACA69179.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186697633|gb|ACC88262.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679190|gb|EEO75293.1| Transcriptional regulator [Yersinia pestis Nepal516]
 gi|229703944|gb|EEO90957.1| Transcriptional regulator [Yersinia pestis Pestoides A]
 gi|262361216|gb|ACY57937.1| Transcriptional regulator [Yersinia pestis D106004]
 gi|294353638|gb|ADE63979.1| Transcriptional regulator [Yersinia pestis Z176003]
 gi|320014316|gb|ADV97887.1| Transcriptional regulator [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 303

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 96/183 (52%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A+ GSFT AAE+L L++S++ + +S LE  +G+KLF R  R L+LT  G +    
Sbjct: 12  AFVTTAQQGSFTAAAEKLGLTKSAVGKSVSRLEDRLGLKLFQRSTRRLSLTPDGERFLAS 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE  + EL     +PSG+LR+      G+  +   L + + LYP++ + +   
Sbjct: 72  CQSAIDILEQAEAELMSHICQPSGRLRVDLPAAFGRQRILPILLDIIRLYPELALTVTFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +D+  +  D  IR+ +   SS L+ R+L T  +   A+P YL    EP+S  EL +H
Sbjct: 132 ERFVDLIEEGIDLVIRIGELADSSGLVARRLTTQKLVICASPDYLLYHGEPVSTDELSQH 191

Query: 190 NLI 192
             +
Sbjct: 192 QCV 194


>gi|241662641|ref|YP_002981001.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240864668|gb|ACS62329.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 303

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 143/294 (48%), Gaps = 15/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++LR+F  VA    FT AA+QL + + ++S  I  LE  +G +LF R  R ++LT+ G 
Sbjct: 4   FEQLRIFIRVAHCAGFTPAADQLGVPRPTVSLAIQQLEARLGTRLFNRTTRRVSLTQDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    E  + + +  +    G+LR+     + +  +   L  F   +P I++
Sbjct: 64  VLLERAIALVADSEELEQQFRPRAQALQGRLRVDLPSRIARRQIAPALPTFFAQHPGIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ ID+  D  DCA+R+ + + S++L  R L ++ +   A+P YL +   P    
Sbjct: 124 ELGSSDRSIDLVRDGIDCALRIGE-LSSTNLGARSLGSLKLINCASPTYLSSNGVPQCPA 182

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L +H  + +     G  +P        L TV   +   R+S     +Y++   YC+ G 
Sbjct: 183 DLPQHLAVNYVSSTSGRAVPWEWTADGHLQTV---MMRARVSANNAETYIA---YCLAGM 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  +P + V+++    +LV ++ D   PS  V   YP     + +++ F N++
Sbjct: 237 GLIQIPAFDVREHLEVGDLVEVLLDWPAPSMPVQIVYPHRRHLSRRVQIFSNWL 290


>gi|241664937|ref|YP_002983297.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|309780257|ref|ZP_07675008.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|240866964|gb|ACS64625.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
 gi|308920960|gb|EFP66606.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 312

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 137/296 (46%), Gaps = 7/296 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+ G   
Sbjct: 6   SMRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  +++   ++  +      S    G LRI   +  G ++L   L  F  LYP++   +
Sbjct: 66  LQRCAQILLDIDEAESLATSRSQALVGGLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P   +++
Sbjct: 126 ALSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQRAEDI 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLP 245
            +H +I      P+   ++       + I  P    L V S   +M   VL   GIA+L 
Sbjct: 186 AEHRVIAMWH--PQLRHEWEMSTPDGQSISVPVQPSL-VTSNAELMHRAVLADMGIAILS 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A + K
Sbjct: 243 SYMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEVK 298


>gi|194366305|ref|YP_002028915.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349109|gb|ACF52232.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 330

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R +  + L Q  L   L +FL  YP ++
Sbjct: 63  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRASVPVSLAQMQLPKLLPKFLEQYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +DI  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 123 LQLNISNRRVDIINEGYDVALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 182

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +EL +H  ++   D   +  E       V R   +PR++        S+++    G GI
Sbjct: 183 PEELTQHVTLSISEDEARQRWELHGPEGEVRRVDLQPRVAGFDFPLLQSMVKD---GFGI 239

Query: 242 ALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
            +LP+ +  D    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 240 TMLPETVCADA---VRNGELEVVLPDWSLPQGVCHAVFASRRGLLPAVRVFI 288


>gi|288959242|ref|YP_003449583.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288911550|dbj|BAI73039.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 314

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 116/256 (45%), Gaps = 21/256 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LRVF  +AR+GS + AA  L LS +++ R+++ LE  +G  L  R   G  LT +
Sbjct: 29  LDWDDLRVFLELARTGSLSAAARGLRLSHATVGRRLAALEATLGRGLMERRPDGYVLTGE 88

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  + R  +E   +        +      +G +R+  T  L    L   L       P +
Sbjct: 89  GESV-RALAEAMDERAQAIRRREGGDTGLTGTVRLTMTQALADLFLIPRLGPLRAANPAL 147

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I+DN+ + ++   AD AIRL +P Q   L+ R+L T+    YAAP           
Sbjct: 148 DLEIIVDNRTLSLARREADLAIRLAQP-QRGDLVGRRLATLGYGLYAAPGA--------- 197

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                   LI + D + +  E   WL   DR  G  R++  + NS    +   V G G A
Sbjct: 198 -----PDTLIAYDDSMAELPEAL-WL---DRHGGGRRVA-FRCNSVQGQLAAAVAGFGTA 247

Query: 243 LLPDYIVKDNPNLVRI 258
           LLP  +    P L R+
Sbjct: 248 LLPCMLADGVPGLERL 263


>gi|260553721|ref|ZP_05825992.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260405121|gb|EEW98620.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 295

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 147/291 (50%), Gaps = 34/291 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L+ F  V ++ +FT AA  + ++QS++S+ I+ LE ++GIKL  R  R LTLT
Sbjct: 1   MKINLNDLKTFSEVVKTKNFTKAAAYMGVTQSAVSQSINNLEAQLGIKLLNRSTRSLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQE-SSVK--PSGKLRIATTIDLGQNLLQGNLKEFLL 117
           E GS+L  +   V   +E   + +++ SS+K  PSG +RI+      +  L   LK+ + 
Sbjct: 61  EAGSRLIEL---VGQNIENIDLGIEQISSMKDLPSGHVRISADAFTIKYYLWPKLKKLVK 117

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAP 171
            YPDI ++L  +N+ IDI+ +  D  +R+       +L+++ L+ + +         A+P
Sbjct: 118 QYPDISLELTSENRRIDIAKEGYDAGVRV------GNLVEKDLIAVPISKEIPFRLVASP 171

Query: 172 HYLKNCREPLSIQELDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN 226
            YL+    P S+ +L KH      L+T   L+    +D N       P+       L + 
Sbjct: 172 EYLEKYGTPQSVDDLKKHKGIYIRLLTDNSLMAWEFKDKNKSVFFRGPVQ------LVMT 225

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMED--VITPSFTVYFC 272
           S   ++   + G  +A LP ++VK   +   LV +++   V  P F +++ 
Sbjct: 226 SLDEMLDAVLDGCAVAYLPYFLVKPALEEKKLVSLLDQHAVTLPPFYLFYT 276


>gi|326797095|ref|YP_004314915.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326547859|gb|ADZ93079.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 294

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 127/249 (51%), Gaps = 7/249 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F     SGS + AAEQL+++ + + + I+ LE+ +G +L  R  R   LT+ G 
Sbjct: 4   FQSMKAFVTTVHSGSMSAAAEQLNITSAMVGQHIASLESRLGTRLLNRTTRRQNLTDFGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++  ++   ++E +  S +  G LRI   +  G ++L   L  +  L P +++
Sbjct: 64  SYLEQCLDILERVAVAEMEAEAQSSEARGTLRITAPVTFGSSVLMPVLVRYRRLSPRVKV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L ++++D+  +  D A R+ + +  S LIQRKL+   M   A+P YL+N   P   +
Sbjct: 124 DVVLTDQNLDLIEERVDLAFRIGE-VPDSRLIQRKLMPYKMVLCASPDYLRNQGVPEQPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIAL 243
           +L  H L+ F       ++ F      +  + E   SC+  +NS  +++   + G GI +
Sbjct: 183 DLAHHELVRFAVSSGAPLKLFK-----NDEMREVSPSCMVTMNSGQALVNAALRGLGIIV 237

Query: 244 LPDYIVKDN 252
            P+ +VKD+
Sbjct: 238 QPEVLVKDH 246


>gi|289673125|ref|ZP_06494015.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
          Length = 298

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 136/287 (47%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA + SFT A ++L +S S I + I  LE  +G++LF+R  R + LT +GS     
Sbjct: 9   VFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEGSIFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LE  ++EL  +   P G+LRI  ++ L   L+   + +F+  YPDI++ +   
Sbjct: 69  CRRILSELEAAEMELSNARDLPKGRLRI--SLPLVSGLVMPVIIDFMRTYPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P    +L +H
Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSKRMGSFQLRIVGAPDYFARHAIPRHPGDLSQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +      P      +W   + R  G   +   Q    N+   ++     G GIA LPD
Sbjct: 186 ACLLHK--FPSTGRFEHW--PLRREAGVDDLELPQAMVCNTTEILVDVARAGLGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++     N  L+ +++D    + T    +P +   + +L+ F +F+
Sbjct: 242 FMISSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288


>gi|88858347|ref|ZP_01132989.1| Transcriptional regulator [Pseudoalteromonas tunicata D2]
 gi|88819964|gb|EAR29777.1| Transcriptional regulator [Pseudoalteromonas tunicata D2]
          Length = 304

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 143/292 (48%), Gaps = 13/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L++F  V  SG+FT AA  L+  +S++S  I  LE ++G  LF+R  R ++ T+ G +
Sbjct: 5   EQLKIFIQVVDSGNFTKAALVLNKPRSTVSTVIQELENKLGTSLFHRTTRSMSPTDDGLQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              +   +  + +  +     + VK  G++R+     + + ++   L +FL+ YPD++I+
Sbjct: 65  YFELARSLVDQFDAAETLFLNNPVKVKGRIRVDIPSRIARRIVIPALPDFLIQYPDLEIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               +K  D+  D  DC +R+  P+  S LI +KL  + +   A+P+YL     P+ + +
Sbjct: 125 FGASDKYTDLVSDGVDCVLRV-GPLTDSELICKKLGDLSLCNCASPNYLVLNGTPIELAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241
           L KH ++ +   +        W   VD   GE R     S + V +  + +   + G GI
Sbjct: 184 LQKHKVVNYCSSV--AASSAGWEYCVD---GEIRKIIMGSNIAVYNAEAYIAAALAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P + V D   +  L+ +M D       +   YP     T ++K F++++
Sbjct: 239 IQVPRFDVVDLIESGALIEVMSDYRPLPLQLSLLYPSRKNLTPRVKIFQDWL 290


>gi|254255380|ref|ZP_04948696.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124901117|gb|EAY71867.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 301

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 16/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F  VA++G F+ AA +L L+ SS+ R +  LE  +G  L  R  R +TL++ G+
Sbjct: 4   FSALRAFVEVAQAGGFSSAARRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V  +L      + +   +PSG LR++  +  G   +  ++  F+  YP + I
Sbjct: 64  VYYARAKRVLEELADADALVADRGDEPSGPLRVSVPVAYGVRRIAPHIGAFVARYPKLDI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+     D AIRL     ++ ++ R L T   +  A+  YL     P +  
Sbjct: 124 DLQLTDERVDLVASRIDVAIRLGDAAPTADVVARPLGTFSRYVVASRRYLDARGTPATPG 183

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L  H  + F   GD       D +    V   +  P    L+ N    + +  + G+GI
Sbjct: 184 DLADHACLRFHFGGDQQAWTFADAHGQTQV--IVAGP----LKSNHSEVLREAALDGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIME--DVI--TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLPD+++  +     L R+ E  DV   T    V   Y    + + ++ AF +F+
Sbjct: 238 ALLPDWLIGGDVEAGRLHRLFERYDVTPGTARAVVTALYLPTQRGSKRVTAFVDFV 293


>gi|332533283|ref|ZP_08409150.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037362|gb|EGI73817.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 299

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 136/291 (46%), Gaps = 13/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++V + VAR G+ T AAE+L++  S++ R+I+ LE  +  +LF+RHARG  +TE G
Sbjct: 7   DWQDVKVAFEVARLGTLTAAAEELNVHHSTVLRRINNLEKNLNARLFHRHARGYKVTEIG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL      ++  LE    ++  +     G L + TT+    ++L    ++F  L+P +Q
Sbjct: 67  TKLFATAQTIHSSLEQLHNDIVAADSTLRGSL-LLTTVSGFMDILGDVCEQFQALHPQVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++IL+ K + +    A  A+R          I + L  +    YA   Y+     P  +
Sbjct: 126 LEVILEQKRLRLDHGQAHIAVRAGPRPDEGDYIAQHLAQLSSGLYANKRYINKYGMPKLL 185

Query: 184 QELDKHNLIT----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L +HN ++    F   +P       + A  D  I   +I  L+V+      +  + G 
Sbjct: 186 SDLQQHNFVSGVAGFNARVP-------YFAWADEHIPASQIK-LRVSETAEATRAIIKGL 237

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  L   +     +LV I+ + +     ++      +  T K++AF   +
Sbjct: 238 GIGGLQHDVAAQYADLVPILHNELHWPTDIWLVTHHLVHRTAKVQAFAELL 288


>gi|325275341|ref|ZP_08141292.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099532|gb|EGB97427.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 295

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 141/290 (48%), Gaps = 10/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FNWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIERIEESLGTALFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ + ++ P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQ-AITPLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  LI RKL    +  YA+  YL       +
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQGYLDRAPPLRN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ I + D +    E    L  ++     P +   +  S ++       G GIA
Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRAPNV-VFRSTSVIAQQVAARAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +LP+Y+ + +P LVR++  + I  S+  + C    L  + +L+   +++ 
Sbjct: 235 VLPNYMARHDPTLVRVLPGETIQRSY--WICTRRELHKSVRLRVVWDYLL 282


>gi|289624442|ref|ZP_06457396.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866141|gb|EGH00850.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 302

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNNEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L  H+ + +G           W   V    G+P I      ++ N+   +    V G G
Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP +IV     + +LVR+++D+     T+   YP+  + +  ++AF  F+
Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQDRQASRPVQAFIEFL 287


>gi|71736300|ref|YP_274688.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556853|gb|AAZ36064.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320328403|gb|EFW84406.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 301

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 11/255 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+
Sbjct: 4   FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    EV   +  ++   +++   PSG LRI   +  G  +L   L  F L +P++++
Sbjct: 64  AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFPEVKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L N+ +D+  +  D AIRL    QSS LI R +    +   AAP YL     P   +
Sbjct: 124 DLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARLMQDYTLTICAAPSYLARHGTPAHPE 183

Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           +L  HN + F    P   E       W  T   P GE  +     +  N+   + Q    
Sbjct: 184 DLGAHNCLAFS--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAACA 239

Query: 238 GSGIALLPDYIVKDN 252
           G G+ +LPD +V+ +
Sbjct: 240 GMGVVMLPDALVQRD 254


>gi|37675914|ref|NP_936310.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37200454|dbj|BAC96280.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 305

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LT+ G  L 
Sbjct: 11  IRSFVLIAQLGNFTKAAEALGVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTDAGKALF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                  H ++   +   +      G++RI      LG+ ++   + +F+  YP +++ L
Sbjct: 71  AQCETALHSIDQAVLAAVDDIEAVRGEIRINCVGGYLGEEVIAEVVGQFMQQYPQVRVDL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+ K ++ S  + RKL+ + M  YA+P YL     P   +EL
Sbjct: 131 DFSSHRVDLIEDEFDIAFRMGK-LEDSGFVARKLIDVEMGTYASPSYLATHGRPEHPKEL 189

Query: 187 DKHNLIT 193
           DKH  +T
Sbjct: 190 DKHACLT 196


>gi|239993069|ref|ZP_04713593.1| transcriptional regulator, LysR family protein [Alteromonas
           macleodii ATCC 27126]
          Length = 303

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V   GSF  AA +L  S+S +S Q++GLE  + ++L  R  R L LT++G+ + 
Sbjct: 12  LAIFASVVECGSFAEAARRLGTSRSRVSEQVAGLEASLDVRLLQRTTRQLMLTDEGNAVF 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               + +  L     +L++ +  P G++ I  T D+    L   L EF   YP+I + ++
Sbjct: 72  SHAKKCHEILHGIDEDLRQPA--PKGRVSITVTNDIAHKFLLPLLPEFKRRYPEIDLHIV 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+     D  +R+  P +  SL+ R L       YA+P YLK   EP +I EL+
Sbjct: 130 SSDDKLDLIAQNIDVGLRIGLP-RDDSLVGRVLYQEQFALYASPDYLKKYGEPKTIAELN 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA-LLPD 246
            H  I    L  + M   ++L   + PI          NS   + +    G GI+ LLP 
Sbjct: 189 NHTWILLSQLNSRIM---HYLMLDNTPIDITPKHYELCNSPHLVQEMVKAGLGISTLLPS 245

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + K+  +  LVRI   + + +      YP       + +A  +++    R
Sbjct: 246 TVQKEVASNELVRIFPSLGSETLLFTLVYPSRKHVPSRTRALIDYLVETCR 296


>gi|188990880|ref|YP_001902890.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732640|emb|CAP50834.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 304

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 134/287 (46%), Gaps = 14/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  VAR GSFT AA QL +SQS++S  +  LET +GI+L  R  R +++TE G +
Sbjct: 12  NDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAGMR 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    +++     L     KP+G +RI T        L   L + L  YPD++++
Sbjct: 72  LFDTVAPRLEEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSKVLPDYPDLKVE 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    DI  +  D  IRL   +    +         M   AAP Y  +   P    E
Sbjct: 132 ITVDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPRQRMAVIAAPSYFVHHTIPAVPAE 191

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +HN I     T G L+P   E       V R  G+        N   ++++  + G+G
Sbjct: 192 LAQHNCIGLRLPTHGGLLPWDFEKDGREQKV-RVDGQ-----WTFNGSSAMLRAALAGAG 245

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           +A LP+ +V D+     L R+++D   P    Y  YP   +++  LK
Sbjct: 246 LAFLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALK 292


>gi|325143752|gb|EGC66069.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M01-240013]
          Length = 299

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 124/253 (49%), Gaps = 7/253 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + I +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAIPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S +EL  H  + F +  P  +   N  A +D      +IS     S   I++  C+ G 
Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDN 252
           GIA L D++V ++
Sbjct: 235 GIACLSDFLVDND 247


>gi|298487066|ref|ZP_07005117.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158419|gb|EFH99488.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 301

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 117/255 (45%), Gaps = 11/255 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+
Sbjct: 4   FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLTEFGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    EV   +  ++   +++   PSG LRI   +  G  +L   L  F L +P++++
Sbjct: 64  AYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFPEVKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L N+ +D+  +  D AIRL    QSS LI R +    +   AAP YL     P    
Sbjct: 124 DLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARPMQDYTLTICAAPSYLARHGAPAHPG 183

Query: 185 ELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           +L  HN + F    P   E       W  T   P GE  +     +  N+   + Q    
Sbjct: 184 DLGAHNCLAFS--YPAGDEWRTAGTQWRMT--GPEGEVLVDVDGSMVANTSAGLYQAACA 239

Query: 238 GSGIALLPDYIVKDN 252
           G G+ +LPD +V+ +
Sbjct: 240 GMGVVMLPDALVQRD 254


>gi|312796028|ref|YP_004028950.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312167803|emb|CBW74806.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 329

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 138/298 (46%), Gaps = 23/298 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ A   L +S+S +SR++S LE  +G++L  R  R L LTE G
Sbjct: 7   DLNDLLYFSQVVEYGGFSAAERALGISKSRLSRRLSDLEAALGVRLLQRSTRKLALTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  HR    +  +       + +    P G +R++  + + Q +L   + EFL  YPD++
Sbjct: 67  ALFHRHCVAMLGEARAALDAVHQLGSTPRGTVRVSVPMTVSQTMLAHWMPEFLRRYPDVK 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + + + N+ ID+  D  D A+R+R +P  +++++ R L         +P  L     P+ 
Sbjct: 127 VVVHVTNRVIDLFEDEIDVALRVRSEPHANANIVVRPLWRREQMLVGSPSLLDANHPPMV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235
             +L ++  ++    +P    D  ++  +  P G       EPR+    +   L I Q  
Sbjct: 187 PADLARYATLS----VPSA--DGRYVFKLIAPDGSHHDYEHEPRLVTADL---LMIHQAV 237

Query: 236 VLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GIA+LPD I +   N   L  +M     P   +Y  +   L   G L A R FI
Sbjct: 238 LAGVGIAVLPDNIYQAAMNAGQLSPVMPGWTLPPPQLYAVF---LSRQGLLPAVRAFI 292


>gi|331659194|ref|ZP_08360136.1| transcriptional regulator, LysR family [Escherichia coli TA206]
 gi|331053776|gb|EGI25805.1| transcriptional regulator, LysR family [Escherichia coli TA206]
          Length = 318

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 29/305 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F    +  SF+ AA+ L +  S+ SR IS LE  + I LF R  RGLTLTE G   +
Sbjct: 14  IRTFISTVKCRSFSSAAKLLKIEASTASRHISELEEYLNITLFIRSTRGLTLTESGQYFY 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++  + E   +        PSG +R++     G+  +   +KEFL LYPDI + ++
Sbjct: 74  QHARQLLLQWEEICLLTSNRDKGPSGLIRMSVPATFGRLHIMPFIKEFLSLYPDISLDIM 133

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D++    D +IR    +  SS+  RKL +    A+A P ++KN    +S  E  
Sbjct: 134 FSDEIQDLTETGIDLSIRT-GILTDSSIHARKLASQTRRAWATPEWIKNNGPLISPDEYT 192

Query: 188 KHNLITFGDLIPKCME--DFNWLATVD---RPIGE-------PRISCLQVNSYLSIMQYC 235
           ++         P  ME  +F+ L +     R  G        P    L V+   +++  C
Sbjct: 193 EY---------PAVMEIINFSRLQSAGWYIRKTGSGDDWHRIPVSYRLSVSDSDALLYAC 243

Query: 236 VLGSGIALLPDYIVKDNP---NLVRIM---EDVITPS-FTVYFCYPEALKNTGKLKAFRN 288
              +GIA+LPD++  +     N++RI    E  ++P    ++  YP+      +++AF +
Sbjct: 244 CHHAGIAILPDWLSCEEARKGNIIRIFPEWEFSMSPGENAIWILYPQKRAMPYRIRAFID 303

Query: 289 FIFLK 293
           FI  K
Sbjct: 304 FIIKK 308


>gi|299770963|ref|YP_003732989.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298701051|gb|ADI91616.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 306

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 139/285 (48%), Gaps = 10/285 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++ + GS    A +L+L+  ++SR+++ LE  +G++L  R  R ++LT +G   
Sbjct: 6   ELAFFCLLVKQGSLVATARELNLTPPAVSRRLTQLEERLGVRLLNRTTRRISLTSEGEVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++  +  +  S   P G LR+   +  G++ +   +  F  +YPD+ +QL
Sbjct: 66  FENAVRILKEIDEMERLVSSSRAAPKGVLRVNAPLGFGRSYIAPAISTFAKIYPDVDVQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ I++  +  D +IR  + I  S LI +KL        A+P YLK   +PL+  +L
Sbjct: 126 HLTDRPINLPDEAIDVSIRFGE-IPDSRLIAKKLAANRRLLCASPSYLKMAGQPLTPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I    +I +    + NW  +  + +   ++   L  N     + + + G GI + 
Sbjct: 185 TQHQCI----VIRQNDSAYGNWRLSHGKQVETVKVHGQLSTNDGAVALNWALEGYGILMR 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            ++ V     +  LV+++ED  TP   VY  Y E L  + K+  F
Sbjct: 241 AEWDVAKYLRSGRLVQVLEDYETPPADVYAVYLERLNLSPKVAHF 285


>gi|271498906|ref|YP_003331931.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342461|gb|ACZ75226.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 298

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 5/260 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++++ F VV   GS T AA QL  + S ISR +S LE ++G+ L +R  R L L+
Sbjct: 1   MKVTLEEMQAFVVVVDCGSVTAAAGQLGQTTSGISRALSRLENKLGMTLMHRTTRRLALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   +  + +E  + ++     KP G+LRI       Q+++   + EF L YP
Sbjct: 61  EEGQIFLQHARDALYAVELAEEQIALRRSKPCGRLRINAAASFMQHVIVPIIPEFRLRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+   + D AIR+ + ++ SS+  R L    +   A+P YL     P
Sbjct: 121 CISLELNSDDVIIDLLEQHTDIAIRIGE-LRDSSIHARPLGATRLRLLASPAYLNRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LS+  L  H L+ F       +         D PI  P I+    ++   + Q  + G G
Sbjct: 180 LSVDALAGHTLLGFTQSESLNLWPLRSAFGDDYPI-SPTIAA---SNGEVLRQLALSGEG 235

Query: 241 IALLPDYIVKDNPNLVRIME 260
           I  L D++ +D+    R+++
Sbjct: 236 IVRLSDFMTRDDVAAGRLVQ 255


>gi|241758927|ref|ZP_04757039.1| LysR-family transcriptional regulator [Neisseria flavescens SK114]
 gi|241320748|gb|EER56981.1| LysR-family transcriptional regulator [Neisseria flavescens SK114]
          Length = 296

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AA+QL +S +  S+ +S LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAADQLDISTAMASKHVSHLENTIQAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +      +   L E+   YP + + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGGNMSAWLAEYRQRYPKVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ ID+  +  D A+R+ K   S SLI + L  I     AAP YL     P + + + 
Sbjct: 127 LDNRHIDLIAEGFDLALRVSK-TPSPSLIVKPLAKIEFVLLAAPDYLARHGTPDTPEAVM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I       +  ++    AT ++ I       ++ ++ L I +    G+GI   P +
Sbjct: 186 QHQAI-LPSYTNQQDQEITHRATAEKAILHLS-PVIRSDNTLMIRELIKAGAGIGYQPLW 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+    +  L++++ D    +  +   Y +    + K+++F +F+
Sbjct: 244 AVQQELKDGTLIQLLPDYTIWADQLNATYVDRAFLSAKVRSFIDFL 289


>gi|190574798|ref|YP_001972643.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190012720|emb|CAQ46349.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 312

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 18/289 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F  +  +GS + AA QL  +Q ++SR++  LE ++G++L  R   GL LTE G +
Sbjct: 15  DLLRTFLRIVDAGSLSAAAVQLGTTQPTVSRRLQALERQLGLRLLQRSTHGLQLTEDGLR 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R    V  + E+ Q EL        G+LR+      GQ  L   +  FL  +P + ++
Sbjct: 75  CQRHAQRVVDEWESLQAELHGEPETLRGRLRVMVPHAFGQAQLLPTMLAFLAQHPQLSLE 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--REPLSI 183
            IL+++  D   +  DCA+R+  P+    ++   L  +     AAP  ++      P   
Sbjct: 135 WILEDRRPDFIAEGIDCAVRV-GPVDEPRMVALPLAEVPRIVVAAPSLVQATAISTPEQA 193

Query: 184 QELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           Q L   +L+T+     L+       + L+   R         L  ++   + Q    G G
Sbjct: 194 QALPWISLVTYYRERLLLHDAQGRAHTLSISPR---------LLSDNLFVVQQAARAGLG 244

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            A++  ++V D+     LV+++ D   P+  V+  +P A +   +L+AF
Sbjct: 245 AAVVSAWLVADDLAQGRLVQLLPDWQAPALPVHVVFPAARQQPPRLRAF 293


>gi|300689815|ref|YP_003750810.1| transcriptional regulator, lysR family [Ralstonia solanacearum
           PSI07]
 gi|299076875|emb|CBJ49488.1| transcriptional regulator, LysR family [Ralstonia solanacearum
           PSI07]
          Length = 298

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 132/289 (45%), Gaps = 24/289 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q +  R +  LE  +G  LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFVRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIEL------QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            L R  +E    LE+T   L      Q   V+  G +RI  +  +   +L   L +    
Sbjct: 68  AL-RPYAE---SLESTSAALLRAASSQREGVR--GTVRITASEVVTVEVLPAILADLHAA 121

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YPD+ I+L+  N+  ++    AD A+R+++P Q   LI R L  I +  +A   YLK C 
Sbjct: 122 YPDLIIELVPSNRLENLLRRDADIAVRMQRPSQ-GVLIARHLGGIELGVHAHRRYLKRCG 180

Query: 179 EPLSIQELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            P ++ +L  H LI +      I        W+   DR         L+ +S L+ +   
Sbjct: 181 TPATLDDLAGHALIGYDRETAFIRGMKGQVPWMRR-DR-------FALRTDSDLAGLAAL 232

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
             G GI +    + + +P+LVR+  D + P    +    E L+++ + +
Sbjct: 233 RAGFGIGICQVGLARHDPDLVRLFADDVAPVLDTWLAMHEDLRDSPRCR 281


>gi|167588496|ref|ZP_02380884.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 313

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 135/297 (45%), Gaps = 19/297 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L +F     +GS + AA  L L +S++S++++ LE  +G +L +R +R   LT  
Sbjct: 1   MNLNDLYLFVQAVEAGSMSAAARLLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+   +       + E+ +  +   + +P G +RI +++ + Q+ L   L  F   +P +
Sbjct: 61  GADFFQHARAAVIEAESARDAVLRQAAEPRGVVRITSSVPVAQHFLAPCLPAFAAAHPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+Q+   ++ +D++ +  D A+R    P+  S+L+QR L    +   A+P YL  C EP 
Sbjct: 121 QLQIHASDRLVDLAQEGFDIAVRSHFAPLPDSALVQRPLAVSPIILVASPAYLARCGEPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCV 236
               L +H+ +  G      ++   W        G+     PR   L  +    ++Q  V
Sbjct: 181 EPAGLAQHDGLYPG------LQSTPWRVGRGVDSGDSVEIAPRPR-LHADESTVLLQAAV 233

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GIA LPD+I  D      LVR++        T     P      G+L   R  +
Sbjct: 234 AGLGIACLPDWIAHDALQTGALVRVLPAWHAGQVTTTLLMPH---RRGQLPGVRAAV 287


>gi|302185701|ref|ZP_07262374.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae 642]
          Length = 302

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 137/306 (44%), Gaps = 13/306 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+FD + + +F  V RSGSF  AA  L +  +++SR++  LE ++  +L  R  R L LT
Sbjct: 1   MAFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLT 60

Query: 61  EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           + G   + R    V   +E  + +L     +P G +RIA   D         +  FL LY
Sbjct: 61  QAGEDFYGRCVGAVDGVMEAAE-QLASGRDEPGGLVRIAAMADFFDFFSMDWVAGFLALY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178
           P +Q++ +L +   D+  D  D A R   P+Q S  + R+L+   H    A+P Y+    
Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDEGHDTMVASPAYIAAYG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
            P S+Q L  H  ++             W L   D  + E  I+     N+  ++ +  +
Sbjct: 179 MPDSLQSLYSHYCVSAAHRGGVT----AWRLLGPDAKMHEVHIASRFNANTAQALRKATL 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K
Sbjct: 235 AGLGIALLPATLIRSDLQDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDK 294

Query: 294 ARDWKF 299
            RD  F
Sbjct: 295 LRDKAF 300


>gi|116050380|ref|YP_790803.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585601|gb|ABJ11616.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 304

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 141/297 (47%), Gaps = 20/297 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  +D +  F  VA   S T AAE++ LS+S IS+++S LE  +G++L YR  R +  T
Sbjct: 1   MSLRFDDIEAFLNVAELNSVTSAAERMSLSKSVISKRVSDLERRLGVRLLYRTTRNVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           E G   ++       +L      + L+E+ +   G+LRI T +  G   L   + +F+  
Sbjct: 61  EAGHFFYKAAKASLQELNNAAEIVALRENDL--CGELRIVTPMSFGTLWLSPIIADFMSQ 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P ++I L +D++  D   +  D +IR+ + +  SSLI R L         +P Y +   
Sbjct: 119 HPRLEIVLQMDDRLTDFEKEGYDLSIRVTR-LDDSSLIARPLANSQRVVCCSPDYAERHG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQY 234
              ++++L +H  + + +  P  +    W      P  +PR          N+  ++   
Sbjct: 178 TLDTLEQLMQHECLGYNNATPSQV----WTFEPAFPGAKPRAVSPRGRFSSNNGQAMRDA 233

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAF 286
            + G G+ALLP +IV ++    R+++    PS       +Y  Y  A   + K+KAF
Sbjct: 234 ALRGQGLALLPLFIVAEDLKNGRLVD--AAPSLRPLDDVIYAMYSRAAAMSPKVKAF 288


>gi|326318947|ref|YP_004236619.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375783|gb|ADX48052.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 321

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 21/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L ++  V   GSF+ AA  L L +S +SR+++ LE  +G++L  R  R +++TE G
Sbjct: 3   DLNDLGLYAAVVTHGSFSAAARALGLPKSKLSRRVAELEQRLGVRLLQRSTRAVSVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +    V    +      + ++ +PSG++R+++ + +    L   L  FL  +P +Q
Sbjct: 63  AAFFKHCEAVTQAAQAAFDVAERATDRPSGRIRVSSPVGVAHMFLAPLLPAFLKQHPGVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ +D+  +  D A+R+R  +  S L+ R L        AAP  L     P ++
Sbjct: 123 VDLDLTNRRVDLIAEGYDVALRIRSALDDSELVVRMLGASPQVLVAAPALLAEHARPSTL 182

Query: 184 QELDKHNLI---TFGDLIPKCM---EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +L     +     G   P+        +W     RP+         V+  + ++    L
Sbjct: 183 AQLAGAPGLGPRGTGGAAPRWRIQPPGGDWAEVEYRPV--------LVSDDIHLLHTAAL 234

Query: 238 -GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GSGIA LP ++  D      L  ++ D   P+  ++  YP      G + A R FI
Sbjct: 235 AGSGIAQLPAHVCADGIAQGRLQHLLADHTLPTHQLHAVYP---SRKGVVPAVRAFI 288


>gi|260460642|ref|ZP_05808893.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259033747|gb|EEW35007.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 292

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 134/286 (46%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF+ AA  L + Q ++S+ I+ LE  +G++L  R  RGL+ T+ G   +
Sbjct: 7   MNTFIRVIETGSFSAAARHLRVGQPAVSKAIAQLEERLGVRLLSRTTRGLSPTDAGLSFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   + +  +   + ++   +G LRI T++  G+  +   LK FL  +P + +++ 
Sbjct: 67  EGAKRAVDEADEAENAARGTAAALTGLLRIGTSVTFGRLHVVPRLKAFLDAHPRLDVEVA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D++++D+  +  D  +RL +    +  I RK+ T      AAP YL    EP++  EL 
Sbjct: 127 MDDRNVDLVEEGVDVMLRLGESFAPAH-IGRKIATCRRLVVAAPSYLAREGEPIAPDELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I F          F   A      G+ R   L+V S   I +  + G G  +  ++
Sbjct: 186 RHEAILFVRAGTSNRWTFRRGAEEISLAGQGR---LRVTSAEGIREAVLAGIGFTVGSEW 242

Query: 248 I--VKDNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   +     VR I+ D   P   ++  +P   K + + + F +F+
Sbjct: 243 MFDAELRSGAVRPILVDWALPPVELWALFPAGRKASVRARTFVDFL 288


>gi|221196325|ref|ZP_03569372.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221202999|ref|ZP_03576018.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176933|gb|EEE09361.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221182879|gb|EEE15279.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 318

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 4/202 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA SG+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G +  
Sbjct: 26  LHVFMSVATSGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYL 85

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQN-LLQGNLKEFLLLYPDIQIQL 126
           + T   Y ++   + EL  +  +PSG LR+ T + L +  ++   L  F   YP +++++
Sbjct: 86  QRTEAAYRQIAQARDELNAAHDEPSGLLRV-TALPLARTQVIAPMLATFHRRYPKVRLEI 144

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +N  +DI  D  D  IRL   +Q   +  R    +     A+P YL     P S+  L
Sbjct: 145 RYENALVDIVNDGFDAGIRLADRLQPGMIGVRIAPALSCALVASPDYLARRGAPASVAAL 204

Query: 187 DKHNLITFGDLIPKCMEDFNWL 208
           D H  I F    P+      WL
Sbjct: 205 DAHACIRF--RFPESGRLHKWL 224


>gi|269961730|ref|ZP_06176090.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833513|gb|EEZ87612.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 301

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 109/187 (58%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT  G + +
Sbjct: 10  IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLTRTTRTLRLTHAGERFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +  H ++   I   + + +  G +R+      +G++++   + EF+L YP+I + L
Sbjct: 70  QECEKALHDIDQALIAAVDDTQEVRGLIRVNCVGGYIGEDIIAKYVNEFMLEYPNITVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID+  D  D AIR+ + ++ +  + RKL+ I M   A+P YLK   EP++ +EL
Sbjct: 130 DFSSPRIDLIEDQFDVAIRMGE-LEDAGFVARKLMMIDMVTLASPRYLKTYGEPVTPKEL 188

Query: 187 DKHNLIT 193
            KH  +T
Sbjct: 189 AKHRTLT 195


>gi|153005754|ref|YP_001380079.1| LysR family transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029327|gb|ABS27095.1| transcriptional regulator, LysR family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 313

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 139/291 (47%), Gaps = 16/291 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  LR F  + RSGS + AA++L + +++++R+++ LE E+G+ LF R  +G T T  
Sbjct: 22  LDWGNLRFFLELTRSGSLSRAAQRLSVDRNTVARRVAALEEELGLALFERGPQGWTRTPA 81

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L  + S +   +      +       +G +R+ T + L  +LL   L      +P +
Sbjct: 82  GDELASLASRIEEDVLALARHVDARDPAVAGAVRLTTAMHLSAHLLVPALPALRERHPAL 141

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA---PHYLKNCRE 179
            +++  D +  D+    AD A+R+ +P + + L+ RKL  +    YAA   P   +   +
Sbjct: 142 VLEIAADQRTFDLGRREADLALRMGRP-RDAGLVTRKLSDVAYGLYAARGSPAGRRGAVD 200

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            LS         I   D +    ++  WLA   R   E R+   + NS  S+     L  
Sbjct: 201 FLS------DPFIGLDDSLASAPQE-RWLA---RTAPERRV-VFRSNSTASLHAAARLEV 249

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A+LP ++ + +P LVR ++    P   ++      L+ T +++A   ++
Sbjct: 250 GVAVLPCFVAEADPGLVR-LDAPEPPHHELWLLVHGDLRRTPRVRAVIEWV 299


>gi|88801131|ref|ZP_01116676.1| probable transcriptional regulator, LysR family protein [Reinekea
           sp. MED297]
 gi|88776112|gb|EAR07342.1| probable transcriptional regulator, LysR family protein [Reinekea
           sp. MED297]
          Length = 302

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 138/288 (47%), Gaps = 6/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  VA +GSFT A E+L LS   +S+ +S LE ++G++LF R  R + LT++G +
Sbjct: 5   DTMKAFVAVAEAGSFTKAGEKLELSNQLVSKYVSQLEEQLGVRLFNRTTRNVRLTQEGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    +   ++  +    +      G+L I+  +      L   +++F   YPD+ + 
Sbjct: 65  CLQHALHILESVDDMENHFGQLQAAAKGQLHISAPVSFATQYLGPLVRDFKKAYPDVGVN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D A+R+   ++ SSLI +++  + +   AAP YL     P   ++
Sbjct: 125 LELSDRKVDVVEEGFDVALRIGH-LKDSSLIAKRVAPVRLVLCAAPSYLDQHGVPEHPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L   + + +  +    +   N L  V R   +   + +  N+   ++   V G G  L P
Sbjct: 184 LIGSHFLRYSYMEYAPLS--NPLMKVLRAHSQNNPNGIIANNGDILVSAAVAGEGYILQP 241

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +IV +   +  L  I++D       +Y  YP       KL+AF +F+
Sbjct: 242 TFIVSEPLKSGQLSIILKDYEPEPMGLYAVYPHRKLLAPKLRAFIDFM 289


>gi|167033203|ref|YP_001668434.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859691|gb|ABY98098.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 303

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 144/289 (49%), Gaps = 11/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  VA+  SF   A++L +S + IS++I  LE  + ++L +R  R +T++E+G +
Sbjct: 8   DDLNIFLQVAKRASFAAVADELGMSAAYISKRIRMLEQTLEVRLLHRTTRRVTVSEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +++   +++  ++    ++     +P+G+LRIA+++ LG+  +   L E    YP + I+
Sbjct: 68  VYQWALQIFDAVQRMGDDISAQHREPAGQLRIASSLGLGRRFVAPALSELAERYPRLDIR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I + +LI + L        AAP YL     P  + E
Sbjct: 128 LDVHDRLVDLIAEGVDLDIRVGNAI-APNLIAKPLARNRRVLCAAPAYLARRGTPKVLGE 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L  H+ +    +I +    F  W L   D   G      L  N      Q+C+ G GI L
Sbjct: 187 LASHDCL----VIKERDHPFGVWQLMGPDGEEGVRVTGGLSTNHGEVAHQWCLDGRGILL 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + V D   +  LV+++ED   P+  ++  Y   L ++ K++   +F
Sbjct: 243 RSWWDVHDSLQDGRLVQVLEDYHQPA-DIWAVYTSPLASSAKVRVAVDF 290


>gi|50122298|ref|YP_051465.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612824|emb|CAG76274.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 293

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 132/288 (45%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  +GSF+ A+ +L + Q ++S+ I  LE ++   L  R  RGLT TE G + +
Sbjct: 7   LETFICVFETGSFSAASRRLGIGQPAVSKAIMQLENQLVTLLLLRSTRGLTPTEAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +     L   Q  +   S   SG+LRI   +   +  +   L EF+  +P++ + +I
Sbjct: 67  EQIAPALKMLGEAQDHIVSGSASLSGRLRICAPVTFARLHIMPRLHEFMAEHPELNVDVI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ ID+  +  D A+RL + ++ SSLI ++L +  M   A P Y      P S   L 
Sbjct: 127 LDDRPIDLIAEGIDVALRLGE-MKDSSLIAQRLASCSMRLLATPDYFARHGIPASPDALA 185

Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  + +  G+   + +   +   T   P G  R+S  +      +    + G+G+A+  
Sbjct: 186 AHPAVIYLQGERTDRWIFSQDGTQTTVFPNGRIRVSAAE-----GVRAAVLSGAGLAVAS 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++     +N  +V  ++        ++  YP     + + + F  F+
Sbjct: 241 EWMFAPELENVQVVTALDSWTLGKMDLWAVYPGGRMTSARARIFTGFV 288


>gi|325920261|ref|ZP_08182209.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325549254|gb|EGD20160.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 303

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 15/283 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   A +GSFT AAE+L L+ S++ + I+ LE  +G++LF R  R L LT+ G+  +RV
Sbjct: 12  IFVSAADAGSFTAAAERLSLTSSAVGKAIARLEARLGVRLFARTTRRLALTDAGAAFYRV 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V  +LE  +  L+     P+G+LR+   +  G+  +   L  F   YP +Q  +   
Sbjct: 72  CVKVLDELEEAEHVLRAEGQAPTGRLRLDLPVSFGRRKVLPVLLPFFQRYPGLQPSISFT 131

Query: 130 NKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D++ +  D A+R+  P Q  SSL  R L        AAP YL +   P SI  L  
Sbjct: 132 DRFVDMAEEGIDIAVRIGGPDQWHSSLGHRYLGHEKRVFCAAPQYLAHRGTPDSIAALLA 191

Query: 189 HNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           H+ + +G           WL       V++   + R+      + +  +   V G GIA 
Sbjct: 192 HDAVLYGQ---ANRSSSPWLLRHGAGPVEQRAMDARVVFGNAEAQVDAV---VAGLGIAQ 245

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           LP +++  +    +LV ++    T    ++  +  A +   KL
Sbjct: 246 LPTWLIDHHLQRGSLVAVLPQCDTEGLPLHLVWMRARQLLPKL 288


>gi|307321677|ref|ZP_07601068.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306892706|gb|EFN23501.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 295

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 123/272 (45%), Gaps = 11/272 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   SFT AA +L  SQSS+S  I  LE  +G++L  R  R +  TE G +L 
Sbjct: 9   LLAFLAVAEEESFTKAAARLGTSQSSLSLIIKRLEARLGVRLLTRTTRSVAPTEAGEQLF 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +  +  +E     L E   KP+G  RI         +L   L  FLL YPDI+++L+
Sbjct: 69  STLAPAFGTIEAQLSALSEFRDKPAGNFRITAGQHSIDTILWPKLSAFLLAYPDIKVELV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++   DI  +  D  +RL   ++   +  R      M    AP  L++   P + QEL 
Sbjct: 129 AESALTDIVAERFDAGVRLGDQVEKDMIAVRIGPPARMIVVGAPSCLRDRPRPKTPQELT 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H  I     +P     + W    +R   E R+     +  N    I++  + G G+  +
Sbjct: 189 THRCINL--RLPSYGGFYAW--EFERDGHEVRVRVDGQVAFNGVPQIVKAALDGFGLTYV 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            + +V++   N  LV++++D  TP F  Y  Y
Sbjct: 245 HEDVVREYLKNGRLVQVLDD-WTPPFPGYHLY 275


>gi|150378261|ref|YP_001314856.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032808|gb|ABR64923.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 291

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 13/250 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+ SF  AAE L +  S++SR+IS LE  +G++L +R  R + LTE G  
Sbjct: 5   NDMALFVEVARARSFRKAAEALGMPNSTLSRRISELEKAIGLRLLHRTTRKIELTEAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               +  +  +      +L     +PSG LR++  +DL    L   + EF   YP I  +
Sbjct: 65  YFERSKRIVDEARLAHEQLGAMLEQPSGVLRVSLPVDLATFYLTPIIGEFARHYPGITFE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D+  +  D AIR+ K ++ SSLI R +     H YA+P +++   EP    +
Sbjct: 125 FDLTPRRVDLVAEPFDLAIRIGK-LEDSSLITRLIGRHSRHLYASPGHIEASGEPARPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L KH  I         +    W  T+ R   +  ++      +NS   I    V   GIA
Sbjct: 184 LAKHECIGM-------LRSPIW--TLHRGANKVDVAVRGRFTLNSVGMIRALAVNHQGIA 234

Query: 243 LLPDYIVKDN 252
           LLP+ I+ D+
Sbjct: 235 LLPEKIIADD 244


>gi|293392431|ref|ZP_06636753.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291425085|gb|EFE98292.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 297

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 136/298 (45%), Gaps = 14/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +LR F  +A  GSF  AA  L +S S++S+ +  LET +G++L  R  R +  TE G
Sbjct: 5   DFAELRAFVAIAEHGSFARAAAHLGMSASALSQTLRNLETRLGVRLLNRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L      +   L+    ++ +   +P+G LR+  T     + L   +  F   YPDI 
Sbjct: 65  AQLWERLRPLMANLDAAVAQVIDQRQQPAGLLRLNITRVAAMHFLAPRISAFNAQYPDIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L +++K +DI     D  +RL + +    +  +    + M   AAP+YL    EP + 
Sbjct: 125 LDLNVEDKLVDIVAGGFDAGVRLHEKLDKDMVAIKLGGELRMRVVAAPNYLSRYGEPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++L +H  + +    P     + W        +D  +  P    L VN    ++Q  + G
Sbjct: 185 RDLLQHRCLNY--RWPTNGNLYRWEFERGAEKLDIAVEGP----LVVNEPEILVQAAIDG 238

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA L ++ +        L+ +++D   P    Y  YP   +    L+AF +F   K
Sbjct: 239 MGIAYLFEHQIAAGLAERRLLPLLDDWTPPFPGFYLYYPANRQMPRPLRAFIDFARAK 296


>gi|190573017|ref|YP_001970862.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190010939|emb|CAQ44548.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 302

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 137/286 (47%), Gaps = 13/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    +  +GSFT AAE+L  + S++SRQ+  LE  + ++L  R++R L+LTE G   +
Sbjct: 7   LRALRAIVDAGSFTAAAERLGTTHSAMSRQLRQLEEHLQVRLLDRNSRRLSLTEAGRDYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  + +  +L+      +    +PSG++RI+    +    L   L  FL  YP + + L 
Sbjct: 67  REAATLLDRLQEADDRARAGQAQPSGRVRISVPQVVASQELPHWLPSFLQRYPQVTLDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D++ +D+     D A+R+   +  S L+ R+L +      AAP YL     P    +L+
Sbjct: 127 ADDQLVDVVGGGFDLALRIAASLPDSQLVARELASCPRILVAAPAYLARHGLPRQAADLE 186

Query: 188 KHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H L+ F     +P         A+V    G+     L+V++  ++    + G GI+L  
Sbjct: 187 QHTLLGFSPTPSMPPWQLQGPRGASVSVDAGQ----RLRVDATPALYAAALAGMGISLFT 242

Query: 246 DYIVKDNPNLVRIMEDVITPSFTV----YFC-YPEALKNTGKLKAF 286
              V+++    R++   + P++      YF  YP A     K++A 
Sbjct: 243 ALTVQEDLRAGRLIR--VLPAWHAGQRRYFALYPHARALAPKVRAL 286


>gi|163731382|ref|ZP_02138829.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
 gi|161394836|gb|EDQ19158.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
          Length = 298

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +WD LR+F  VAR  S + A ++L L  +++ R+I  LET +   LF +  +G  LT
Sbjct: 1   MQTNWDDLRIFLAVARDNSLSGAGKRLRLDPATVGRRIQKLETSLQTVLFTKSPQGYALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L     +    +     EL E S + SG++RI         LL       L   P
Sbjct: 61  ETGQALLARAEQAETAMRAAVAELPEQSDRLSGQIRIGAPDGAANYLLPQVCAAILRENP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++Q++   +  ++S   AD AI +  P  +  LI +K+    +H  A+  Y++     
Sbjct: 121 DLEVQIVALPRVFNLSRREADMAIAVSAPT-AGRLIVQKITDYKLHLAASQEYIRENGAI 179

Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            S+ +L +HN++ +  D+I     + ++L      IG  ++  L  NS    +     G 
Sbjct: 180 QSVADLARHNVVGYIADMI--FDRELDYL----EEIGLTKVP-LASNSVSVQLNLIRQGG 232

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+ ++ D+ +   P + RI+ + ++ +   Y    E  +   +L+ F
Sbjct: 233 GVGVVHDFALPSAPEVSRILTEDVSLTRAFYLIRHEDDRRNARLRRF 279


>gi|15800008|ref|NP_286020.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 EDL933]
 gi|12513092|gb|AAG54628.1|AE005207_3 putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
          Length = 329

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 149/300 (49%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ A  ++ ++ +++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 36  FALIVRAGSFSRAVSEMGITLAALSQNLKSLEERLNTKLIYRTTRNISLTEEGQRLYEVL 95

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 96  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 155

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 156 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 208

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 209 QELSNHNCLRLRHKSSGALSAWEFSKVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 265

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 266 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 323


>gi|33591706|ref|NP_879350.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33571349|emb|CAE44827.1| LysR-family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|332381125|gb|AEE65972.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 307

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 141/301 (46%), Gaps = 18/301 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ A+  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLYYFAQVVEQGGFSAASRVLDVPKSRLSRRISQLEDRLGVRLLQRTTRRLRLTTAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+       +  +++    P+G + ++  + + Q +L   L EFL  +P + 
Sbjct: 63  ERYLHYCQEMTASARAAEDAMRQLQSAPAGPVVVSCPVSIAQQMLAPLLPEFLDAWPSVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++ N+ +D+  +  D A+R+R  + + + L+ + L        A+P YL+    P +
Sbjct: 123 VQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHLGIASGTLVASPAYLQRHGTPET 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
            QEL  H  ++F D       +  W  T  R  GE     +Q     N ++ + Q  V G
Sbjct: 183 PQELASHRTLSFND----PQNEVRWPLTNQR--GESVEVAVQPVLASNDFIVLTQAAVRG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294
            GIALLP    +       LVR++ D  +P   V+  YP      G + A R F+ FL  
Sbjct: 237 RGIALLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYP---SRRGMMPAVRAFLDFLAK 293

Query: 295 R 295
           R
Sbjct: 294 R 294


>gi|317407048|gb|EFV87068.1| hypothetical protein HMPREF0005_05830 [Achromobacter xylosoxidans
           C54]
          Length = 296

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 104/200 (52%), Gaps = 5/200 (2%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  + D++R   +F  VA  GS T AAE   +  S++SR+IS  E+++G+KL +R  R L
Sbjct: 1   MKKELDRMRDMALFVQVAALGSLTRAAESTGVPASTLSRRISEFESQIGVKLLHRSTRRL 60

Query: 58  TLTEQGSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
            LT+ G + L R+T +V  +      EL+E   +P+G LR+   +D      +  L ++ 
Sbjct: 61  ALTDIGQRYLERIT-DVVDRARAISGELEEEMGRPTGHLRVCAPVDFNAYFPEAALADYC 119

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P ++ +L    +  D++ +  D  I   +P Q+S +++R++       YAAP YL+ 
Sbjct: 120 ASHPGVRFELHCSAQLPDLATEPYDICIATTEPPQASRMVRRRIGMAEYQLYAAPAYLRA 179

Query: 177 CREPLSIQELDKHNLITFGD 196
              P    EL +H  +   D
Sbjct: 180 YGVPAHPAELARHRCVVMPD 199


>gi|296158123|ref|ZP_06840955.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295891459|gb|EFG71245.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 312

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++      GQ+ +      +   YPD+QI+L
Sbjct: 66  LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHAMTSFGQHYVVPAAGRYQERYPDVQIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ L   +  S L+ ++L +    A A+P YL+    P +  +L
Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLELHGVPQTPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
            +H  +    ++        W  T D P GE  I    +  QVN   ++      G G+ 
Sbjct: 186 VRHTCL---QMVTPVFPTDKW--TFDGPNGEETIALGPTTFQVNVAEAMAVAVSSGMGVG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L+P Y       +  LV ++ +  + +  +Y  YP       K++ +  F+
Sbjct: 241 LIPIYSAISGLRSGELVWLLPEYTSQAMNLYALYPSRQYLDAKIRTWVEFL 291


>gi|206559025|ref|YP_002229785.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035062|emb|CAR50935.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 320

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 20/298 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + +
Sbjct: 66  YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDM 125

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +
Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKRGTPQTIAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
           L  HN +           D N     + V       R+S    L VN    +    + G+
Sbjct: 186 LANHNYLR---------RDSNSTMLDSLVIDAAAASRVSLNGNLIVNHLEGLRAAVLAGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIALL   +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 237 GIALLGTEVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|152970576|ref|YP_001335685.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330015461|ref|ZP_08308163.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150955425|gb|ABR77455.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328531682|gb|EGF58513.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 311

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 5/246 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT +G+  
Sbjct: 6   SLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++  + EL  S  +P+GKLRI+  + +G  LL   L  F  LYP +++ L
Sbjct: 66  LTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFSRLYPQVELDL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +++  +  D AIR    +  S LI RKL        A+P YL     P S  EL
Sbjct: 125 DFSDRLVNLIDEGVDVAIR-SGELADSRLIARKLGGFRFVLCASPAYLAEYGAPDSPAEL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALLP 245
             H  I F    P       W     R  G+ R  + + VN+  + ++    G GIA +P
Sbjct: 184 AAHKCIFF--RFPATGLIQPWELRGMRLTGDFRSAAVMTVNNIEAAIRLSAAGMGIAYVP 241

Query: 246 DYIVKD 251
           D++V++
Sbjct: 242 DFVVRE 247


>gi|300692925|ref|YP_003753920.1| transcriptional regulator, lysR family [Ralstonia solanacearum
           PSI07]
 gi|299079985|emb|CBJ52661.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 312

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+ G    
Sbjct: 7   MRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTDVGETYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   ++  +      S    G LRI   +  G ++L   L  F  LYP++   + 
Sbjct: 67  QRCQQILLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPEVTFDVA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P   +++ 
Sbjct: 127 LSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQRAEDIV 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246
            H +I      P+   ++   +   + I  P    L V S   +M   VL   GIA+L  
Sbjct: 187 DHRVIAMWH--PQLRHEWEMTSPDGQSIAVPVQPSL-VTSNAELMHRAVLADMGIAILSS 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A + K
Sbjct: 244 YMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQAMEAK 298


>gi|170751133|ref|YP_001757393.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657655|gb|ACB26710.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 297

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 139/295 (47%), Gaps = 18/295 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W ++ VF  VA +GS + A  +L LSQ S+SR +  LE  +G  L  R  R ++LT
Sbjct: 1   MSDRWQEMAVFVRVAETGSLSRAGRELMLSQPSVSRIVGALEARLGTTLLLRTTRSISLT 60

Query: 61  EQGS-KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           E GS  L R  S +    E  Q      S++  G +R+A  +  G   +   L  FL  +
Sbjct: 61  EAGSLYLERARSLLAEVEEAEQAARGVDSLQ--GAIRLAMPVLYGSRAVVPALATFLARH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P ++I++ + +   ++ MD  D AIRL   P+  S+   R+L T+     A+P YL +  
Sbjct: 119 PGLRIEITMSDARQNLVMDGVDIAIRLGVGPLADSTFGARRLATVERLVVASPAYLSSRG 178

Query: 179 EPLSIQELDKHNLIT----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            P+   EL +H+ I     FG    +   D   + TVD P      + L +NS   I+  
Sbjct: 179 TPVIPAELARHDCIVQHGLFGRESWRFTRDGT-VTTVDVP------ARLWINSAPGILAA 231

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            V G GIAL    +  D      LV+++E        VY  +P   + + K++A 
Sbjct: 232 AVAGMGIALATRVMAGDELRAGQLVQVLEPYRLDPAEVYAVFPAGPRPSAKVRAI 286


>gi|307307304|ref|ZP_07587040.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306901818|gb|EFN32418.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 318

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 123/261 (47%), Gaps = 17/261 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GS T  A  L  + S +SR I+ LE  +G +L  R  R L+LT++G      
Sbjct: 13  AFITVAEKGSMTEGAVTLSTTPSVLSRAITRLEARLGAQLMRRTTRRLSLTDEGRAYLEQ 72

Query: 70  TSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  ++  +  +Q  +    +G +RI+     G   L   L  F  ++P++Q++L +
Sbjct: 73  ARAAFSMIDDAERAIQGPTGASLTGHVRISVPTTYGHYRLPAMLDRFTQIHPEVQVELSI 132

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+++D+  +  D AIRL  P  +S L+ RKL    +   A+PHYL+    P S+++L  
Sbjct: 133 TNRNVDLVAEGYDLAIRL-GPFPASGLVARKLEDAPLRLVASPHYLERAGVPRSVEDLAT 191

Query: 189 HNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           H  + F  ++P       WL  V+       P G  R+     +  L ++     G GI 
Sbjct: 192 HQCLPF--VMPSTGRCAPWLFRVEGRDVDWTPPGRIRV----FDDVLGVVSLAENGLGIC 245

Query: 243 LLPDYIVK---DNPNLVRIME 260
              D+IV+   +   LV ++E
Sbjct: 246 QTYDFIVRGRIEQGRLVDVLE 266


>gi|309781960|ref|ZP_07676691.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308919304|gb|EFP64970.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 308

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 134/295 (45%), Gaps = 18/295 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT+ G  
Sbjct: 7   ETMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQLTQDGQA 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   ++  Q   ++S     G+LR+   + + + ++   L   L  +P+++I+
Sbjct: 67  FYERCQDLLADMDELQTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAHPELEIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D   +  DC +R+   +  SSLI R L  +H    A+P Y+     P ++ +
Sbjct: 127 LSSTDRRVDPVREGFDCVLRIGT-LTDSSLIARPLGQLHQVNCASPAYIARYGMPKTLDD 185

Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LD H ++    T G   P       W  TVD R    P    + V+S  S    C  G G
Sbjct: 186 LDHHRIVHYVQTLGTKSP------GWEYTVDGRSAFRPMKGAVTVSSAESYDAACRAGLG 239

Query: 241 IALLPDY-----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   P Y      + D   LV +M D   P   V   YP       +++ F N++
Sbjct: 240 MIQAPVYAGLSSAIADG-TLVDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWM 293


>gi|193782691|ref|NP_436119.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|193073147|gb|AAK65531.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 291

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 122/253 (48%), Gaps = 7/253 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+ SF  AAE L +  S++SR++S LE  +G++L +R  R + LTE G  
Sbjct: 5   NDMALFVEVARARSFRKAAEALGMPNSTLSRRVSELEKAIGLRLLHRTTRKIELTEAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  +  +  +      +L     +PSG LR++  ++L    L   + EF   YP I  +
Sbjct: 65  YYERSKRIVDEARLAHEQLGAMLNQPSGVLRVSLPVNLATFYLTPIIGEFARHYPGITFE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D+  +  D AIR+ K ++ S LI R +     H YA+P Y++   EP +  E
Sbjct: 125 FDLTPRRVDLVAEPFDVAIRIGK-LEDSGLITRLIGRHSRHLYASPGYIEASGEPATPAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  I  G L          +  VD  +         +NS   I    V   GIALLP
Sbjct: 184 LAEHECI--GMLRSPIWSLHQGINKVDVAVR----GRFTLNSVGMIRALAVNHQGIALLP 237

Query: 246 DYIVKDNPNLVRI 258
           + IV ++    R+
Sbjct: 238 EKIVAEDVAFGRL 250


>gi|16125722|ref|NP_420286.1| LysR family transcriptional regulator [Caulobacter crescentus CB15]
 gi|221234478|ref|YP_002516914.1| LysR family transcriptional regulator [Caulobacter crescentus
           NA1000]
 gi|13422844|gb|AAK23454.1| transcriptional regulator, LysR family [Caulobacter crescentus
           CB15]
 gi|220963650|gb|ACL95006.1| transcriptional regulator, LysR family [Caulobacter crescentus
           NA1000]
          Length = 298

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 133/263 (50%), Gaps = 8/263 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L VF  VA   SF  A+E L LS++++S+ ++ LE  +G +L  R +R L LT+ G
Sbjct: 6   DLEGLAVFAKVAELRSFAAASEALALSKATVSKAVTRLELRLGARLLNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    S V  + E  + E    S  P G +R+A  + LG   L   L  FL  YPD+ 
Sbjct: 66  QALVERASRVLAEAEAAEEEASSQSAAPRGLVRMAAPMSLGVASLAPVLPAFLEAYPDVS 125

Query: 124 IQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L L +  +D I M + D A+R+   +  SSL+ R+L  +  H  AAP Y      P  
Sbjct: 126 IDLHLSDATVDLIGMGF-DIALRVAD-LPDSSLLARRLRAVQRHVVAAPAYWTAHGRPTH 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  +T+G         F      +  +  PR S L+ N+  +++   + G+G+A
Sbjct: 184 PADLAEHRGLTYGHQASPETWRFQRAGGEEAAV-RPR-SVLRANNGDALLPPLLAGTGVA 241

Query: 243 LLPDYIVKDNPNLV-RIMEDVIT 264
           +LPD+IV   P L  R +E V+T
Sbjct: 242 MLPDFIV--GPALADRRLEAVLT 262


>gi|288934003|ref|YP_003438062.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288888732|gb|ADC57050.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 294

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT +G +  
Sbjct: 7   MQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEQYLKVRLLNRTTRRVSLTPEGLQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E ++  L ES  +P G+LR+     +   ++  +L +F   YPDI + + 
Sbjct: 67  AQCREILALIEHSESSLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR+ + + +SSL+ R L        A+P YL+    P S + L 
Sbjct: 127 VSDRQVDLIQEGVDCVIRMGE-LNNSSLVARPLGRFRWVTCASPDYLREYGVPSSPEALS 185

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           KH  + +     +  ++F ++    T   P+         VN     ++ C+ G G+A L
Sbjct: 186 KHRAVHYFSGQARRADEFRFVRHGETFSVPVS----GNAAVNETGLYIKMCLAGFGLAQL 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + IV D+     LV ++ D   P   V   YP     +  ++AF  ++
Sbjct: 242 AENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWM 290


>gi|254247014|ref|ZP_04940335.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124871790|gb|EAY63506.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 320

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 20/298 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + +
Sbjct: 66  YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDM 125

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +
Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
           L  HN +           D N     + V       R+S    L VN    +    + G+
Sbjct: 186 LANHNYLR---------RDSNSTMLDSLVIDAAAASRVSLNGNLIVNHLEGLRAAVLAGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIALL   +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 237 GIALLGTEVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|13472647|ref|NP_104214.1| transcription regulator [Mesorhizobium loti MAFF303099]
 gi|14023394|dbj|BAB50000.1| transcription regulator [Mesorhizobium loti MAFF303099]
          Length = 292

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 135/289 (46%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF+ AA  L + QS++S+ ++ LE  +G++L  R  RGL+ T+ G   +
Sbjct: 7   MSTFIRVIETGSFSAAARHLRVGQSAVSKAVAQLEERLGVRLLSRTTRGLSPTDAGLSFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   + +  +   + ++   +G LRI T++  G+  +   LK FL  +P + +++ 
Sbjct: 67  EGAKRAVDEADEAENAARGTAAALTGLLRIGTSVTFGRLHVVPRLKAFLDAHPRLDVEVA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D++++D+  +  D  +RL +    +  I RK+        AAP YL    EP++  EL 
Sbjct: 127 MDDRNVDLVEEGVDVMLRLGESFAPAH-IGRKIAACRRLVVAAPSYLAREGEPIAPDELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
           +H  I F     +      W  T  R   E  ++    L+V S   I +  + G G  + 
Sbjct: 186 RHEAILF----VRAGTSIRW--TFRRGAEEVSLAGQGRLRVTSAEGIREAVLSGIGFTVG 239

Query: 245 PDYI--VKDNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +++   +     VR I+ +   P   ++  +P   K + + + F  F+
Sbjct: 240 SEWMFDAELRSGAVRPILTEWTLPPVELWALFPAGRKASARARTFVEFL 288


>gi|15829587|ref|NP_308360.1| transcriptional regulator [Escherichia coli O157:H7 str. Sakai]
 gi|189404069|ref|ZP_02786953.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|217324650|ref|ZP_03440734.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|13359790|dbj|BAB33756.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           Sakai]
 gi|189367730|gb|EDU86146.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|217320871|gb|EEC29295.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|320192377|gb|EFW67021.1| Putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. EC1212]
 gi|326343430|gb|EGD67194.1| Putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. 1044]
          Length = 308

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 149/300 (49%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ A  ++ ++ +++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 15  FALIVRAGSFSRAVSEMGITLAALSQNLKSLEERLNTKLIYRTTRNISLTEEGQRLYEVL 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 75  VSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIELIMDD 134

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  D  D  IRL + +         S LI  KLVT+     A+P YLK    P + 
Sbjct: 135 GLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLI--KLVTV-----ASPDYLKEHGIPETP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLG 238
           QEL  HN +         +  + +   V    G           Y+     S+++  + G
Sbjct: 188 QELSNHNCLRLRHKSSGALSAWEFSKVVG---GNEEFEIEVSGKYISNDDESMIRMALNG 244

Query: 239 SGIALLPDYIVKDNPN---LVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ + ++ N   L  I+ED  V  P F +Y      ++   K++AF +F+  K
Sbjct: 245 TGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 302


>gi|325122705|gb|ADY82228.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 202

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 4/197 (2%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA   S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADIEVFLIVAEKLSISAAAIYLATTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERAIQGKQLQISGKIKLSVPTTYGHYRLPELLQKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR +  + SS+LI R L    +   A+P YLK  
Sbjct: 121 QYPDIQIEVSISNRNVDLIAEGFDLAIR-QGQLPSSTLIARPLELAPLQLVASPEYLKRM 179

Query: 178 REPLSIQELDKHNLITF 194
             P ++++L+ H  I F
Sbjct: 180 GVPQTLEDLNHHQCIAF 196


>gi|293602369|ref|ZP_06684815.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292819131|gb|EFF78166.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 296

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 139/303 (45%), Gaps = 27/303 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  VG++L  R  R + LT
Sbjct: 1   MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERSVGMRLLNRSTRKIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +  +      +L + +V+P G+LRI+    L Q  L   + EF   +P
Sbjct: 61  EAGAIYFERCRHIVEEARIAHDQLLDMAVQPKGRLRISLPTSLAQLFLPAVISEFREQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI+    L  + ID   +  D  +R  ++P   SSLI RK+V +    YA+P YL    E
Sbjct: 121 DIECDFDLSMRPIDPISNPFDLILRFGQQP--DSSLISRKIVLMAHQLYASPDYLARHGE 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           P    +L  H       L P   E+  F  L + D      ++  +QV+  LS     +L
Sbjct: 179 PRVPADLAHHEC-----LRPTMREESSFWMLHSGD------KVERVQVSGRLSANNVGML 227

Query: 238 ----GSGIALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
               G G+ + P  +            LVR++ D       ++   P  +    K KAF 
Sbjct: 228 GRLAGQGLGITPLLVFDAMERAIKQAGLVRVLPDWSLTPLPLFALLPSRML-PAKTKAFL 286

Query: 288 NFI 290
           +FI
Sbjct: 287 DFI 289


>gi|120600264|ref|YP_964838.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120560357|gb|ABM26284.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
 gi|319425041|gb|ADV53115.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 329

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 137/289 (47%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  GS 
Sbjct: 4   EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P + ++
Sbjct: 64  FYLRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I   + +D+     D A  +   + +  L+ R + T  +  YA+P YL     P + QE
Sbjct: 124 VISSAESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPEYLAAHGIPKTPQE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           ++ HN+  F     K   +  W+   +    E R+      NS    +++ + G GI   
Sbjct: 184 IESHNVSLFRLSNGKIFNEL-WIGLEE----EVRVRGNFCSNSVEVAVEFALQGRGIVYA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V    +   LV ++ ++       +  YP     +   + F +FI
Sbjct: 239 PTEVVAEFVETGELVTLLPEIDAHQGECFLAYPSRRYVSLASRRFIDFI 287


>gi|298488058|ref|ZP_07006095.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157337|gb|EFH98420.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 302

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNNEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L  H+ + +G           W   V    G+P I      ++ N+   +    V G G
Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP +IV     + +LVR+++D+     T+   YP+  + +  ++AF  F+
Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287


>gi|260753861|ref|YP_003226754.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258553224|gb|ACV76170.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 304

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 6/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F +VA+  SFT AA +L +SQS++S  +  LE  + + L  R  R +T T  G  
Sbjct: 9   NDLQSFLIVAQEKSFTKAAAKLGVSQSALSHTVRQLEARLNLTLLIRTTRSVTPTSAGEY 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +  +  + ++E     + E   +P+G +RI +T D    +++  +K FL  YP ++I+
Sbjct: 69  LIQNMAPHFDQIEKQLASIGELRNQPTGTIRITSTDDALAYVIRPKIKGFLQKYPGVKIE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ D K +DI  +  D AIRL + +            I      +P Y +N   P + Q+
Sbjct: 129 LVSDLKLVDIFTEKFDAAIRLGENVTKEMASVPLTPDIRFTVVGSPEYFQNKPIPETPQD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  IT    +P     + W      R I       L  NS   I   C+ G G+A +
Sbjct: 189 LLNHQCITI--RLPTHGGIYAWEFEKAGRDIKIRVDGPLVFNSIFPIRNACLDGLGLAHM 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P+ + K   +   L+ ++ED        + C+P   +N      F
Sbjct: 247 PEIMAKKYIEEGRLIPVLEDWCPYWSGYHLCFPHHYENIRPFSLF 291


>gi|254418364|ref|ZP_05032088.1| hypothetical protein BBAL3_674 [Brevundimonas sp. BAL3]
 gi|196184541|gb|EDX79517.1| hypothetical protein BBAL3_674 [Brevundimonas sp. BAL3]
          Length = 290

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 133/283 (46%), Gaps = 7/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A  GSF  AAE + +S   +++ +  LE  +G  L +R  R  +LT+ G   +
Sbjct: 1   MAVFVKSADLGSFAAAAEAMGMSPQMVAKHVVFLEDRLGAALLHRTTRRQSLTDVGRAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  + E      Q+   +P G LR+   +  G   L   +  +L  YPD+QI L 
Sbjct: 61  DRCKLVLAEAEAADTIAQDMRSQPKGVLRVNAPMTFGSFTLAPFITRYLARYPDMQIDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D   +  D  +R+   +  SSLI   L    + A A+P YL     P +  +L+
Sbjct: 121 LNDRFVDPLEEGFDVMVRI-GAVGDSSLIAHPLAPYRLIACASPTYLARRGAPETPADLE 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ + +    P       WL T +    E + S  ++ N + +++   + G G+ L P+
Sbjct: 180 RHDCLAYAYWSPSI--PCRWLFTRNGRDEEIKASGRMRSNDWKALLHAAIEGYGVTLGPE 237

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            ++K   D+  LVR++ +   P   ++  YP   + T  +++F
Sbjct: 238 SVMKAEIDSGRLVRVLPEYEGPVRPMHVLYPAGRRPTVNVRSF 280


>gi|159161967|ref|NP_396599.3| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141758|gb|AAK91040.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 320

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  LR F ++  SGSF  AA  L ++ S++S  I  LE  +G KL  R  R + LTE G
Sbjct: 5   DFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+L R    +  + +T   +L E   KPSG L++       +  ++  L  F   Y DI 
Sbjct: 65  SRLARRLGPMMSEFDTLMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAYTDIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +  +DI++   D A+   + IQ   +  R    +    YA+P YL     P   
Sbjct: 125 IDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLVSIRLGPELKRIVYASPRYLARFGAPSEP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
            +L  HN I F    P     + W     +   E  +S  L V+     +   + G GI 
Sbjct: 185 GDLVHHNCINFRG--PHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKGIG 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + I K   D+ +L+ ++E  + P      CYP+    +  LKA  +++  ++R
Sbjct: 243 YGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSR 298


>gi|251788354|ref|YP_003003075.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247536975|gb|ACT05596.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 294

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 136/280 (48%), Gaps = 17/280 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F +VAR GSFT AA +L L+QS +SR I  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMLVAREGSFTRAATRLGLAQSGVSRAIRELEARLGVQLLSRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+R     +  L+     L      PSG +RI  +      +L   L  F L YPDI+
Sbjct: 66  EQLYRTALAGFDSLDLGLATLAHFRDTPSGTVRINASQHAIDMVLLPKLAAFRLRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ ++I  +  D  IRL   +    +  R    + M   A P + ++   P + 
Sbjct: 126 LELISESRFVNIIDERFDAGIRLGAEVDEGMIAVRIAPDMEMVVVATPDHFRHYGFPQTP 185

Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVL 237
            +L  H  I +    G L       ++W    D  R   +P+   +  +SY+ +     L
Sbjct: 186 ADLVVHPCIAYQFADGSL-------YHWELWQDGKRLRHKPQGQWVFSDSYMEVAA-ARL 237

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           G G+A +P+ +V D+     L+R+++        ++  YP
Sbjct: 238 GLGLAYVPEELVADDLAQGTLIRVLQRYSHRLAGLHLYYP 277


>gi|70729856|ref|YP_259595.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344155|gb|AAY91761.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 297

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 124/257 (48%), Gaps = 7/257 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA +L+ + ++++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAARRLNTTHATVARHIEAVEKALGTALFVQHAQGYELTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ +SS  P GK+R+  T  LG   L   +      YP +
Sbjct: 62  GEALLKHAEAMENVALLVQEEITQSSA-PLGKIRVGVTEGLGVKFLASRMVGLFERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  L+ RKL    +  YA+  YL       S
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-SADMLVTRKLTDYRLALYASQAYLDRAPPLRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  I + D +    E    L  ++     P++      S ++  +    G GIA
Sbjct: 180 REDLGRHAWIGYVDDLLFSQE----LMFLNSFCRNPQV-VFHSTSVIAQQEAARSGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIM 259
           +LP Y+   +P LV ++
Sbjct: 235 VLPCYMAAADPQLVPLL 251


>gi|332529727|ref|ZP_08405681.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040748|gb|EGI77120.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 304

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 142/295 (48%), Gaps = 16/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  +GSF+  A +   +Q ++++ ++ LE  + ++L  R+ RG+++TE G+  +
Sbjct: 7   MQVFVRVVETGSFSKTAREFATTQPTVTKLVAALEESLRVRLLNRNTRGISVTESGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E     ++    +  G LRI T++  G+ ++     +F+  +P +Q+ L 
Sbjct: 67  EKCKNIVRDAEEADNSVRLQQTQAQGLLRIGTSVAFGRRVITPLALDFMAKHPQVQLDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++  D+     D A+R+ K +  S+L  R L T      A+P YL+    P    EL 
Sbjct: 127 FEDRYTDLVAQGIDVAVRMGK-LADSTLGARFLTTNPWVLVASPKYLRKQGMPKKASELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  + +  +    + D  W  T   P GE    P    L+ N+  +++     G GIA 
Sbjct: 186 EHPALIYSSV----LGDDVWRMT--SPKGEAVTVPVAGRLRSNNLSAVLAAARNGYGIAA 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +P Y+  +   + ++V +++  + P   ++  +P      GK+ AF    +L++R
Sbjct: 240 MPRYVASESLKSGHVVEVLQGHVLPEQEIHAVFPSPKLVPGKVMAF--IAYLQSR 292


>gi|330943890|gb|EGH46123.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 301

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 131/293 (44%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RV+  V  +GS T AA+   +S + +S  +  LE  +G+ L  R  R   LTE G+
Sbjct: 4   FQAMRVYVKVVEAGSLTAAAQACSISTTMVSNHLRALEERLGVSLLQRTTRRQRLTEFGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    EV   +  ++   +++   P+G LRI   +  G  +L   L EF   +P++++
Sbjct: 64  AYYERCLEVLGLVAESEQLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPEVKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L N+ +D+  +  D AIRL    +SS LI R L    +   AAP YL     P   +
Sbjct: 124 DLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTPTHPE 183

Query: 185 ELDKHNLITFGDLIPKCME----DFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L +HN + F    P   E       W  T  D  +       +  N+   + Q    G 
Sbjct: 184 DLRQHNCLAFA--YPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARAGM 241

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+ +LPD +V+ +     LV +  D   P       Y +      KL++F  +
Sbjct: 242 GVVMLPDALVQRDLQEGRLVALFPDYQLPRRPTNLLYVQDRYRLPKLRSFVEY 294


>gi|226943891|ref|YP_002798964.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226718818|gb|ACO77989.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 299

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 143/285 (50%), Gaps = 9/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ ++++ LE ++G++LF+R  R + LT +G+     
Sbjct: 13  VFVQVAETRSFVAAGRVLGISASAVGKRVARLEEKLGVRLFHRSTRSIALTAEGALFLER 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++ L  ++  P G+LR+  ++ L  +L+   L +F+  YP+I++ L   
Sbjct: 73  SRRILAEIEATELALSRTAGAPRGRLRV--SLPLVSSLVLPVLADFMAEYPEIELDLDFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  + +  S L  R+L    +    +P YL+    P    +L  H
Sbjct: 131 DRLVDVIDEGFDVVVRTGQ-LSDSRLSARRLGAFRLLVVGSPDYLERRGVPRRPADLAGH 189

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDYI 248
             + +       +E +      D P  EP++    V N+  + + +   G G+A LPD+ 
Sbjct: 190 ACLHYRFSNTGKLEPWPLRRLPDEP--EPQLPVSMVCNNIETRVCFAQRGRGLACLPDFA 247

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++       L  +++D +  +   Y  +P   + + +L+AF +F+
Sbjct: 248 IRGALAEGRLRSVLDDYMEGTGYFYLLWPSGRQVSPRLRAFIDFL 292


>gi|170691056|ref|ZP_02882222.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170144305|gb|EDT12467.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 348

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 133/294 (45%), Gaps = 17/294 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS----KL 66
           F  VA  GSF  A ++L + +S++SR +  LE ++  +LF R  R  +LT +G       
Sbjct: 47  FLAVANEGSFAKAGDRLGIGRSAVSRNVQKLEAQLDARLFLRTTRSTSLTREGELFYQNC 106

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H     +   LE  + EL+     P G LRI +T   G+ ++   L+ F   YPDI ++L
Sbjct: 107 HPGVERIVQALEDMR-ELRNGP--PRGHLRICSTPGFGRKIVAPLLRGFRSRYPDIALEL 163

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+++  D   D  D   R  + ++ S ++ ++L+ + M   A+P Y K    P  + +L
Sbjct: 164 LLNDRPADFIADRVDVGFRDGR-MEDSEVVAKQLIPMQMIVCASPQYAKKHGVPRHVDDL 222

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I F     +     +W   VD  I +  PR      N    I+Q  + G GIA L
Sbjct: 223 AQHRCINFRSASGRVS---DWEFKVDGLIQKQLPRAQ-HTFNDMDLIVQAVLDGEGIAQL 278

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P Y V D      LV  +          Y CY        +++ F +++  + R
Sbjct: 279 PAYQVCDLLRKERLVSCLAQYAPDDRGHYVCYLSRKHLPARIRVFIDYMAEQTR 332


>gi|146343004|ref|YP_001208052.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146195810|emb|CAL79837.1| Putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 304

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 141/301 (46%), Gaps = 22/301 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   +R+F  V R GSF   A Q  +  S++SR ++ LE ++G +L  R  R LT TE 
Sbjct: 1   MDLQAIRIFVEVLRLGSFAAVARQHAVDPSTVSRTVAVLEEQLGFRLLQRSTRRLTATEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  +L+  + E ++    PSG+LR+  ++  G  ++   L     L+P +
Sbjct: 61  GVRYFERVQPLLDELDRAESEARDIVAAPSGRLRVTASVAFGATVVVPRLARLRALHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+L ++ +D+  +  D AIRL   +  + L+  +L+    H  A+P Y+    +P  
Sbjct: 121 DIELMLSDQIVDVVAERIDIAIRLGARLD-TGLVGTRLMQTRYHVCASPDYIARNGKPAR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + L+ H+ + F    P       W       A  + P+       + +++ L++ +  +
Sbjct: 180 PERLEDHDCLLF----PYQGFRTQWRFRSRGGAVTEVPVK----GGIVISNALALHRAAL 231

Query: 237 LGSGIALLPDYIVKDNPNLVRIME-----DVITPSFT--VYFCYPEALKNTGKLKAFRNF 289
            G G  LL D++V  +    R++      +V   +F+   +  YP       K++AF +F
Sbjct: 232 EGLGPVLLADWLVGADLKHGRLVNLFPGYEVTATAFSTAAWILYPSRSYVPLKVRAFIDF 291

Query: 290 I 290
           +
Sbjct: 292 M 292


>gi|238792710|ref|ZP_04636342.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238728066|gb|EEQ19588.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 306

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 139/296 (46%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + +KL +R  R L +T  G+
Sbjct: 4   FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPDIQ 
Sbjct: 64  VYYERVIRLLADMEDAENSLSSAAITPRGRLRVDVPSPLARLILVPALPAFHARYPDIQF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  D  DC +R  + I   SLI R +  + +  Y AP Y++    P   +
Sbjct: 124 DMGVSDRMVDLIGDNVDCVLRGGE-INDQSLIARHVGDLQIGVYVAPSYVERLGAPAHPR 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ F     G + P  +   +    +    G   ++    N+YL   +  + 
Sbjct: 183 ELENTDHRIVGFLSSRTGKIDPLVLRSESEHIEI---TGSYVLAVDDGNAYL---EAGLA 236

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  LP Y+   +    +L+ +          ++  +P       KL+ F ++I
Sbjct: 237 GLGVIALPIYMAAAHQAVGSLIPLFAQWRISPMPLHLAFPPNRHVNAKLRVFIDWI 292


>gi|296115322|ref|ZP_06833961.1| probable transcriptional regulator protein, LysR family
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295978145|gb|EFG84884.1| probable transcriptional regulator protein, LysR family
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 299

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  SG+FT AA+ L +  ++++  I  LE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRAFVRVVESGNFTRAAKALGMPNATMTTHIQALEAHLKTKLLNRSTRRVVVTNDGAIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++     L+ S V P+G++R+  +  +   ++   L +F   YPDI I L 
Sbjct: 67  ERAKLIIADIDEIDASLKNSHVLPNGRVRVEMSGGIADLVVLPALHDFYNKYPDIHIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID   +  DCA+R   P   SSLI R++        A+P YL+    P   ++L+
Sbjct: 127 VSDRPIDYIAENVDCALRSGAP-TDSSLIARRVAEFEFVTCASPFYLERHGIPKHPKDLE 185

Query: 188 K-HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             H +I +     G  +       N    VD P      S L VN   +  Q   +G G+
Sbjct: 186 TGHQMIRYFRPQSGRALAVEFHRENKKICVDPP------SVLSVNDARTFTQGIRMGLGV 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +P  +V+ +     LV ++ +   P  T+Y  +P     + +++ F +++ 
Sbjct: 240 GCVPQLLVQSDLRQGRLVELLPEWEQPPITIYLVFPSNRHVSNRVRVFSDWLI 292


>gi|84386215|ref|ZP_00989244.1| Transcriptional regulator [Vibrio splendidus 12B01]
 gi|84378985|gb|EAP95839.1| Transcriptional regulator [Vibrio splendidus 12B01]
          Length = 319

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 97/170 (57%), Gaps = 1/170 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +++F  V  SGSF+ AA+ L+++ SS++R I  LE+++   LF R  R L LTE+G  
Sbjct: 15  DLIKIFDQVVESGSFSKAAQALNMAPSSVARNIDNLESKIKSSLFKRSTRQLILTEEGQY 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ ++++     +   E+Q +   P G LR++     G   L   + EFL  YP IQ++
Sbjct: 75  FYQKSAKILQDSNSLLEEMQGNQGIPEGLLRVSVFESFGNLCLTPLIPEFLERYPKIQVE 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           L LDN  +D++ +  D AIR+  P Q S L  R L+T +    AAP Y++
Sbjct: 135 LELDNNVVDLNSENIDVAIRIGTP-QDSRLKARHLLTNNTSLVAAPSYIE 183


>gi|226945638|ref|YP_002800711.1| LysR family regulatory protein [Azotobacter vinelandii DJ]
 gi|226720565|gb|ACO79736.1| Regulatory protein, LysR family [Azotobacter vinelandii DJ]
          Length = 309

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 145/287 (50%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ + ++ LE ++G++LF+R  R +TLT +G+     
Sbjct: 9   VFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSVTLTAEGTLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  ++EL +++  P G+LR+  ++ L  +L+   L EF+  YP+I++ L   
Sbjct: 69  SRRILAEIEAAELELSQATAAPRGRLRV--SLPLVSSLVLPVLGEFMREYPEIELDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R+L T      A+P YL     P    +L  H
Sbjct: 127 DRMVDVIEEGFDAVVRTGEPTD-SRLTARRLGTFRSVLVASPGYLDLRGTPQVPADLLLH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W A    P G P +   + +  N+  + + + + G GIA LPD
Sbjct: 186 TCLHY--RFPNSGKLETW-ALRQEP-GAPELQLPTSMICNNIETRVCFALQGLGIAYLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++   +  L  I+ D +  +   +  +P +   + K++A  +F+
Sbjct: 242 FAIREPLADGRLQPILADHVERAGVFHVLWPASKHPSPKVRALVDFL 288


>gi|283856505|ref|YP_163309.2| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|283775509|gb|AAV90198.2| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 304

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 6/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F +VA+  SFT AA +L +SQS++S  +  LE  + + L  R  R +T T  G  
Sbjct: 9   NDLQSFLIVAQEKSFTKAAAKLGVSQSALSHTVRQLEARLNLTLLIRTTRSVTPTSAGEY 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +  +  + ++E     + E   +P+G +RI +T D    +++  +K FL  YP ++I+
Sbjct: 69  LIQNMAPHFDQIEKQLASIGELRNQPTGTIRITSTDDALAYVIRPKIKGFLQKYPGVKIE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ D K +DI  +  D AIRL + +            I      +P Y +N   P + Q+
Sbjct: 129 LVSDLKLVDIFTEKFDAAIRLGENVTKEMASVPLTPDIRFTVVGSPEYFQNKPIPETPQD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  IT    +P     + W      R I       L  NS   I   C+ G G+A +
Sbjct: 189 LLNHQCITI--RLPTHGGIYAWEFEKAGRDIKIRVDGPLVFNSIFPIRNACLDGLGLAHM 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P+ + K   +   L+ ++ED        + C+P   +N      F
Sbjct: 247 PEIMAKKYIEEGRLIPVLEDWCPYWSGYHLCFPHHYENIRPFSLF 291


>gi|70731338|ref|YP_261079.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345637|gb|AAY93243.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 299

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 10/287 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   + VF  VA + SFT A   L +S S++ + I+ LE  +  +LF+R  R ++LT 
Sbjct: 1   MDWLGSIPVFMQVAETRSFTEAGRLLGVSSSAVGKSIARLEERLETRLFHRTTRSISLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  ++E  + +L +SS  P GKLR++     G  LL   L EF+  YP 
Sbjct: 61  EGAGFLERCRRIAAEVEAAEFQLCDSSSAPVGKLRVSAPQVHG--LLMPVLAEFMQRYPQ 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L ++ +D+  +  D  +R   P + S L+ R+L    M    +P Y +    P 
Sbjct: 119 IELDIDLSDRMVDVVEEGFDLVVRTGNP-KDSRLLARQLGRFRMVLVGSPGYFQQRGVPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240
           + QEL  H+ +         +E + +    D P  EP +     +S +  +++    G G
Sbjct: 178 TPQELRSHSCLRHTFHHTGKLEAWPFKVQADAP--EPVLPTRLTSSSIEAVEHAARSGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           IA LPD++V+       L  +++  +  +   +  +P +     KL+
Sbjct: 236 IACLPDFMVQAAVRRGELQTVLDPYLEHNGAFWVLWPSSRHAAAKLR 282


>gi|260556241|ref|ZP_05828460.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260410296|gb|EEX03595.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 298

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 140/292 (47%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L+ FY+   VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+ 
Sbjct: 2   DRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPDI
Sbjct: 62  GQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL   +   D+     DC +R+ + + +SSLI R +  + M   A+P YL++   P  
Sbjct: 122 HLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASPQYLQDYGVPEQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + +L++H LI +   + +   +F +        G   + S L VN+  + +     G GI
Sbjct: 181 LNDLEQHKLINYAGAVGEKQGEFIYQG------GTVMMDSALSVNNTEAYIAAACAGLGI 234

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y V+D      LV ++     PS  +   YP       +L+ F N++
Sbjct: 235 IQLPYYDVQDKIERGILVEVLSAYSAPSLPLNILYPNRSYIPKRLEVFMNWV 286


>gi|83648406|ref|YP_436841.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83636449|gb|ABC32416.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 306

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 143/295 (48%), Gaps = 17/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  +  F+ VA+ GSFT AA+ L+ S+S +S+Q+  LE  +  +L +R  R L LTE 
Sbjct: 8   LEW--VAAFHQVAQDGSFTQAADSLNSSKSQVSKQVKALEALLQTQLLHRTTRSLRLTEA 65

Query: 63  GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G  L R ++E+   + +      +L E +V   G LR    + LG +++   LK F L Y
Sbjct: 66  GEALFRYSTEIQALFRQATEVVSDLNEDTV---GVLRFTCPVSLGISMMPEILKLFRLRY 122

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++Q+ L N+  ++  +  D AIR   P     L+ R L  +     A+P ++    +
Sbjct: 123 PRVKVQIDLANESRNLIAEEFDLAIRA-TPQPDPYLVARPLGAMVDAICASPEFITRHGK 181

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P + +EL +   I       +  +   W  T  +R I  P  + +  N Y  + Q  V G
Sbjct: 182 PETPEELTRFPCIVHN----QHQQLSQWRFTGPEREISVPIQAEIAANQYPMMRQCAVEG 237

Query: 239 SGIALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  LP Y   +D  +  LVR++ED  + + T++  +P       KL  F+  +
Sbjct: 238 LGVTKLPFYEAYRDIQSGRLVRLLEDYPSHTHTLFVVFPAQRYQPKKLIYFKELL 292


>gi|167840298|ref|ZP_02466982.1| LysR-family transcriptional regulator [Burkholderia thailandensis
           MSMB43]
          Length = 306

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 135/295 (45%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA+ L+ +++++S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 5   DRFDVFRAVVEAGSFTGAADVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVELTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + E    + +       G LR+ +T++    ++   L+EF  ++P ++++
Sbjct: 65  FYERCLRVLAEAEEAIDDARGEHGGMQGSLRVTSTVEYALRVVAPALREFTSMHPALRVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178
           L       D+  D  D AIRL +  Q   L  R +   T  +   A+P     H      
Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRFEQFQDLPYRGVCIDTYDVRPVASPALLAEHGAARIE 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++  L +        +    + D +    V RP  +P    L  ++   +  +   G
Sbjct: 185 SPDALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLCAFARQG 241

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           SG+ALLP+++V+   DN  L+  + D   P   VY  YP       K++A+ +FI
Sbjct: 242 SGVALLPEWLVRDDLDNGTLIDALPDYRFPQQGVYALYPSTRHVPQKVRAWVDFI 296


>gi|91224510|ref|ZP_01259772.1| hypothetical transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91190852|gb|EAS77119.1| hypothetical transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 309

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 143/274 (52%), Gaps = 8/274 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +KL +   V+++GSF  AA+ +++ +S +S+ I  LE  +G++L  R  R L+LT+ G +
Sbjct: 5   NKLHLLLEVSKAGSFAKAADGMNIDRSVLSKHIKQLEEHLGVRLLNRTTRSLSLTQVGKQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   L+ TQ   +    +PSGK+RI+++   G+  LQ ++++FL  YP   ++
Sbjct: 65  IVEKADQISQLLDDTQQIAENFQTEPSGKVRISSSTLFGKLYLQPSIEKFLHKYPKASVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD+  +D+     D A R+  P++ SS++ RKL        A+ + ++    P +  E
Sbjct: 125 LMLDDLHVDVIRSNFDIAFRI-GPMRDSSMVARKLAKNTTAIIASRNLIEKHGNPETPDE 183

Query: 186 LDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L K   I +  G+ I   ++ ++  A  D     P      VN    I++    G G AL
Sbjct: 184 LVKLPFIIYSNGNFIVDKLKFYDK-AKSDGLDTYPISGSYMVNEAELIIESVKSGLGAAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSF-TVYFCY 273
           +  +++ +N    NLV+++ +  T  F  +Y  Y
Sbjct: 243 IGQFMLPNNLESSNLVQLLPEYETQDFGDIYAMY 276


>gi|88858573|ref|ZP_01133215.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
 gi|88820190|gb|EAR30003.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
          Length = 289

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 6/286 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R+ Y VA  GS + AA  L+++ +++ R ++ LE  +GIKLF RH RG  LT+ G 
Sbjct: 6   WDDYRIAYQVAIDGSLSKAAITLNINHTTVLRHVNQLEDSLGIKLFIRHQRGYQLTDAGF 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L     +V+ ++   Q  L +S  + +G LRI + +   + +L   L+ F+  +P ++I
Sbjct: 66  LLLNKMPQVHSQITRLQNMLCDSEGEITGILRITSVLTYSK-ILNPALRAFIKQHPKLRI 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  +  + +       +IR+ K      +I +KL  +    YA   Y+     P S  
Sbjct: 125 ELVSTDDIVPLESGAVHVSIRIGKKPVDGDIIVKKLTDVEFAYYATEEYVAEHGSPSSSA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E  +H    F  L         ++  +   I E  +   Q N++  + Q  + G GI  L
Sbjct: 185 EFKQH----FWVLPSGGKRSIPFVKHITEHIPEENV-IYQSNNFPDVHQAVIDGFGIGPL 239

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                K +P+L +I    +  S +++F Y   LK++ ++K    F+
Sbjct: 240 DLQQAKQHPDLHKITAIDMPLSESLWFVYHRDLKHSNRVKTLYQFL 285


>gi|307728251|ref|YP_003905475.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307582786|gb|ADN56184.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 315

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 145/290 (50%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRQVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +LE  +  +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQVLTELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDIT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R +   H+   A+P YL+    P +  +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARPIAMAHLVLCASPAYLRRRGIPKTAADL 186

Query: 187 DKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244
            +HN + +  +     M+     A V       R+S   + ++L   +  VL G+GIALL
Sbjct: 187 ARHNFLQYAGVSALDVMQSTGEAARV-------RLSGNLIVNHLEAQRVMVLHGAGIALL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
              ++  +     LV ++ D + P    ++  Y      + K+++F +F+
Sbjct: 240 GTEVIGADLAEGRLVPLLVDEMPPRELPIHVVYASRRHLSAKVRSFVDFL 289


>gi|39937805|ref|NP_950081.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39651665|emb|CAE30187.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           CGA009]
          Length = 304

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 5/247 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++R F  +A  GS +  A  L++ QS+++RQ+  LE  VG  L  R  R +TLTE+GS+
Sbjct: 9   ERIRTFVRIAERGSLSAVARDLNVGQSTVTRQLQELEAAVGAPLLSRTTRRVTLTEEGSR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   LE    E   +S  P+G +RI+ T   G       +  F   YPDI I 
Sbjct: 69  YYARCVQILRLLEQAGDEALGASGTPAGTIRISCTASFGVLHASRLIFAFQDRYPDIGID 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ +D+  +  D AIRL  P+  SSL  R L   H    A+P YL    +P S Q+
Sbjct: 129 FGLTDQRVDLVREGVDLAIRL-APLTDSSLKLRTLGHSHRLLVASPDYLAAHGKPTSPQD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  +    ++     D   L   D+ I   P    L+V+  L+  +  + G GIA  
Sbjct: 188 LSNHQGVR---MVNVAGSDLLVLQGPDQEIHRVPFGGRLRVDHGLAAREAMIAGRGIAAT 244

Query: 245 PDYIVKD 251
             ++V D
Sbjct: 245 HRWLVDD 251


>gi|86136547|ref|ZP_01055126.1| probable transcriptional regulator [Roseobacter sp. MED193]
 gi|85827421|gb|EAQ47617.1| probable transcriptional regulator [Roseobacter sp. MED193]
          Length = 291

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 139/306 (45%), Gaps = 35/306 (11%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D LR   + A++   GSF  AA+ L LS S +S  I+ LE  +G+ L YR  R L+LT  
Sbjct: 3   DHLRQVAIFAKTVDHGSFRAAAQALRLSPSVVSHHITQLEHHLGVALLYRSTRRLSLTRD 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +    ET    + + + +PSG+L+I     L Q+ +   + +F   YP +
Sbjct: 63  GERLIGSARAMLEAAETGLQAVSDQAAQPSGELQITIPAALAQSHVVDRIAQFTATYPAV 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L   +   ++  D  D A+R+   ++ SSL  RKL  +  +  AA  Y+    +P S
Sbjct: 123 RLTLDFSDLRREVIADGIDVALRM-GWLEDSSLKARKLFDVQRYLIAAQSYVDQRSKPES 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISC-----LQVNSYLS 230
                           P  ++D++W       L T  R  G+  I+      L VN   +
Sbjct: 182 ----------------PNDLQDWDWLTLAQVGLTTEFRTEGKHVITLKPNPRLSVNDAHA 225

Query: 231 IMQYCVLGSGIALLPDYIVKDN--PNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +      G+G+AL+P+Y+  ++    LV R++ D    S  VY  +P      G    F 
Sbjct: 226 LYHLARSGAGLALVPEYLTHEDIAAGLVRRVLPDWNVASVGVYAVWPPNAPKEGLSALFI 285

Query: 288 NFIFLK 293
           NF+  K
Sbjct: 286 NFLAKK 291


>gi|103486055|ref|YP_615616.1| LysR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976132|gb|ABF52283.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis
           RB2256]
          Length = 311

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 137/293 (46%), Gaps = 13/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++    F  VA  GSFT AA  L LS++++S+ ++ LET +GI L +R +R + ++  G
Sbjct: 5   DYEGWACFVAVADGGSFTAAAAALGLSKATVSKAVTRLETSLGITLLHRSSRVVAVSTAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +           +   +  +G +R+A  +  G  +L   L  FL  +P ++
Sbjct: 65  AGLLDEARAMVAAATAATEAARGDRLDLAGPIRLAAPMSFGIKVLGPVLAAFLDRHPAVE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +   D   +  D  +R+  P+  SSL+ R +  +     A+P YL+    P   
Sbjct: 125 IDLLLSDARNDPIAEGIDLTLRI-APLADSSLLARTIAPVAASLIASPAYLEKHGTPRHP 183

Query: 184 QELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +L +H LI +G     +P         ATV  P G      L  N+   ++   V GSG
Sbjct: 184 LDLARHRLIGYGHRQRAMPLHFSREGEEATV-LPTGP-----LFANNGDVMVPMIVAGSG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA+LPD+I  +      +V I+ D   P   ++   P +     +++AF + +
Sbjct: 238 IAVLPDFIAAEELAAGTVVPILTDWSLPQSYLHLLSPPSRLRPARVRAFSDHL 290


>gi|222109397|ref|YP_002551661.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221728841|gb|ACM31661.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 305

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 8/274 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++ +F  VA   SFT AAE L + ++S S  +  LET++G +L +R  R + LT+ G 
Sbjct: 4   FDRMHIFARVAELASFTQAAEALGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    ++   ++  Q   Q        G++RI  +  + +N++   L E L  +P ++
Sbjct: 64  AYYERCKDLLADVDELQSMFQHPDGAGLKGRVRIDMSTGMARNVVVPRLPELLARHPGLK 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L    + +D+  +  DC +R    +  SSL+ R L  + +   A+P YL+    P S+
Sbjct: 124 VELSSTERRVDVVREGFDCVLRT-GAVVDSSLVARPLGLVRLVNCASPAYLRAHGTPRSL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H L+ F + +      F   A VD   +  P    L VN+  + M  C+ G G+ 
Sbjct: 183 ADLPGHRLVHFVNTLGARSAGFE--AVVDGALVLTPMQGALTVNNAEAYMAGCLAGLGLI 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P   V D     +LV ++  +  P   +   Y
Sbjct: 241 QVPHLGVVDLLARGDLVEVLPQLAAPPMPLTLMY 274


>gi|149910810|ref|ZP_01899444.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149806144|gb|EDM66124.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 311

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 10/294 (3%)

Query: 1   MSFDWDKLRVFYV-VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           +SF+  K  V Y  +   G+ + AA  L+LS++ +S  +  LET++G+KL  R  R  TL
Sbjct: 13  VSFEQLKSMVVYAQIVEQGTLSAAARHLNLSRAVVSYHLKKLETQLGLKLLNRTTRSFTL 72

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G + ++   E+ H+ E    +++    +P G L+I   +++G  ++   L  F + +
Sbjct: 73  TEAGQQYYQHCQEIAHQAEAANQQIENLKHEPEGLLKITCPVNVGLQIIVPALNMFKIQF 132

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I++ +IL +  ++I  +  D AIR   P+  S L   KL+++     A+P YL     
Sbjct: 133 PKIELDIILTDDIVNIMQEGIDLAIR-GAPLVDSGLQALKLISMKTCLCASPDYLNKYGR 191

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P+S  EL++HN + +              A   RP G      +  N+  +   +   G 
Sbjct: 192 PVSPTELNEHNWVLYKLSSSTLTLSKGTRAYSVRPKG-----SINTNNAAARTAFVEGGH 246

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA +P Y       +  L +++ D    +  +Y  +P     + K +   +F+
Sbjct: 247 GIARIPLYDAAPKIASHKLEQLLSDYELSNIELYGVFPPGSAGSKKHRVLLSFL 300


>gi|146340987|ref|YP_001206035.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146193793|emb|CAL77810.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 299

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 11/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+ F  V  +GSFT AA  L L Q +I+++I+ LE + G +LF R  R L  T +  +
Sbjct: 5   DALQTFIRVMEAGSFTQAAADLGLGQPAITKRIALLEEQFGCRLFVRTTRKLRPTPEADR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + ++  ++    E+  +        PSG LR+      G+        E+   YPD+++ 
Sbjct: 65  VLKLAKDIVTLFESAGVPSPRRVGAPSGTLRMTVPTSFGRYFFADIFAEYGRRYPDVRLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    + +D+     + AIR+   + SSSL+ R++ T+     AAP  L   R P    +
Sbjct: 125 IRFTEQVVDLVETGTELAIRI-GVLSSSSLVARRVGTVKRLLAAAPSLLARHRPPRLPND 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVL-GSGIAL 243
           L +   +T+  L PK    F    T    +G  P ++C   +    IM    L G G A+
Sbjct: 184 LRQLPCVTYSRLSPKNEWSFE-SETGRHVVGITPTLTCDDAD----IMTLAALEGLGAAV 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPD+   +   +  L+ ++ D   PS  ++  YP+    + + + FR+ I  +A
Sbjct: 239 LPDWCAVEHIASGRLIHLLPDYDVPSLPLHVVYPDPQWTSHRARLFRDLIIERA 292


>gi|307309017|ref|ZP_07588697.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306900490|gb|EFN31104.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 295

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 123/272 (45%), Gaps = 11/272 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   SFT AA +L  SQSS+S  I  LE  +G++L  R  R +  TE G +L 
Sbjct: 9   LLAFLAVAEEESFTKAAARLGTSQSSLSLIIKRLEARLGVRLLTRTTRSVAPTEAGEQLF 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +  +  +E     L E   KP+G  RI         +L   L  FLL YPDI+++L+
Sbjct: 69  STLAPAFGTIEAQLSALSEFRDKPAGNFRITAGQHSIDTILWPKLSAFLLAYPDIKVELV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++   DI  +  D  +RL   ++   +  R      M    AP  L++   P + QEL 
Sbjct: 129 AESALTDIVAERFDAGVRLGDQVEKDMIAVRIGPPARMIVVGAPSCLRDRPPPKTPQELT 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H  I     +P     + W    +R   E R+     +  N    I++  + G G+  +
Sbjct: 189 THRCINL--RLPSYGGFYAW--EFERDGHEVRVRVDGQVAFNGVPQIVKAALDGFGLTYV 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            + +V++   N  LV++++D  TP F  Y  Y
Sbjct: 245 HEDVVREYLKNGRLVQVLDD-WTPPFPGYHLY 275


>gi|293602121|ref|ZP_06684573.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553]
 gi|292819457|gb|EFF78486.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553]
          Length = 311

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 139/284 (48%), Gaps = 26/284 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ + D LRVF  V  +GS + AAE L  + S +SR +S LE ++G+ L  R  R + LT
Sbjct: 19  MALNSDALRVFLGVVDAGSLSAAAELLGQTASGVSRALSRLEEDLGVILLNRTTRRMELT 78

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   LE  +  ++    +P+G+LR+  ++ +  + +  ++ +F   YP
Sbjct: 79  EEGAHFLPKARQIIASLEEAEECMRMVHQRPAGRLRVDASVPVMLHCVVPHVGDFRREYP 138

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L  +++ +D+     D AIR+  P+  S+L  R L        A+P Y+     P
Sbjct: 139 EITLELTSNDRIVDLMEHRTDIAIRM-GPLTDSTLHARALRPSPRWMMASPDYIARRGAP 197

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQ 233
            ++++L +H ++ F        E  N W      P+     S  Q    L+        Q
Sbjct: 198 ETVEDLAQHEVLGFTQ-----PESLNLW------PLKHAGGSSFQATPTLATSSGETQRQ 246

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDV----ITPSFTVY 270
             + G GIA L D++V+++     LV++M+ V    + P   VY
Sbjct: 247 LALRGVGIACLSDFVVREDIAAGRLVKVMQGVYSDHLQPMHAVY 290


>gi|260549391|ref|ZP_05823610.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407500|gb|EEX00974.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 305

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 15/224 (6%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    +F +VA   S + AA  L  + S +SR I+ LE ++GI+LF R  R L
Sbjct: 1   MSRQFDHLADVEIFLIVAEKLSISTAAIDLSTTPSVVSRTITRLEKKLGIQLFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++I+     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERLVQGEQLQISGKIKISVPTTYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR +  + +S+LI R L    +   A+P YLK  
Sbjct: 121 QYPDIQIEVSISNRNVDLIAEGFDLAIR-QGQLPNSTLIARPLEHAPLKLVASPAYLKRM 179

Query: 178 REPLSIQELDKHNLITF-----GDLIPKCMEDFN------WLAT 210
             P ++ EL+ H  I F     G + P   +D +      W+ T
Sbjct: 180 GIPKNLDELNHHQCIAFELPSNGKVTPWFFKDIDIDQEIQWIPT 223


>gi|90423721|ref|YP_532091.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105735|gb|ABD87772.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 298

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 139/300 (46%), Gaps = 14/300 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA    F  AA +L LS S+++R ++ LE  VG +L  R  R +TLT+ G++
Sbjct: 5   DAMTAFVAVADLQGFAPAACKLGLSPSAVTRLVAALEERVGARLLQRTTRSVTLTDVGAR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +E  +   Q    +P+G+L ++  +  G+  +   +  +L  YP++  +
Sbjct: 65  YLERARRILADVEEAEGSAQAERTQPAGRLVVSAPVGFGRLHVTPLISAWLKRYPEVAGE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +++  D  DCAIR+ + +  SSL+ R +  +     A+P YL     P +   
Sbjct: 125 LRLTDRVVNLVEDGVDCAIRIGQ-LPDSSLVARAVGDMRRIVVASPDYLAARGVPKTPAA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L KH+ I FG L      D+ +     R I   R++C      N   + + +   G G+ 
Sbjct: 184 LAKHDTIQFGAL--AAAPDWRF-QDAGREI---RVACTPRFTTNVADAAIWHAEQGGGLT 237

Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +  Y   +     R   ++     P   ++  YP +   + K+++F + +   A DW+F
Sbjct: 238 RVLAYQAAEGLAAGRLKVVLRKFEPPPLPIHIVYPTSRLLSAKVRSFIDLLIETA-DWRF 296


>gi|15597628|ref|NP_251122.1| bistable expression regulator, BexR [Pseudomonas aeruginosa PAO1]
 gi|107101883|ref|ZP_01365801.1| hypothetical protein PaerPA_01002928 [Pseudomonas aeruginosa PACS2]
 gi|218891586|ref|YP_002440453.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235443|ref|ZP_04928766.1| hypothetical protein PACG_01352 [Pseudomonas aeruginosa C3719]
 gi|254240869|ref|ZP_04934191.1| hypothetical protein PA2G_01543 [Pseudomonas aeruginosa 2192]
 gi|296389157|ref|ZP_06878632.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313110653|ref|ZP_07796523.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9948478|gb|AAG05820.1|AE004670_8 bistable expression regulator, BexR [Pseudomonas aeruginosa PAO1]
 gi|126167374|gb|EAZ52885.1| hypothetical protein PACG_01352 [Pseudomonas aeruginosa C3719]
 gi|126194247|gb|EAZ58310.1| hypothetical protein PA2G_01543 [Pseudomonas aeruginosa 2192]
 gi|218771812|emb|CAW27589.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310883025|gb|EFQ41619.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 304

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 142/301 (47%), Gaps = 28/301 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  +D +  F  VA   S T AAE++ LS+S IS+++S LE  +G++L YR  R +  T
Sbjct: 1   MSLRFDDIEAFLNVAELNSVTSAAERMSLSKSVISKRVSDLERRLGVRLLYRTTRNVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           E G   ++       +L      + L+E+ +   G+LRI T +  G   L   + +F+  
Sbjct: 61  EAGHFFYKAAKASLQELNNAAEIVALRENDL--CGELRIVTPMSFGTLWLSPIIADFMSQ 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P ++I L +D++  D   +  D +IR+ + +  SSLI R L         +P Y +   
Sbjct: 119 HPRLEIVLQMDDRLTDFEKEGYDLSIRVTR-LDDSSLIARPLANSQRVVCCSPDYAERHG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQY 234
              ++++L +H  + + +  P  +    W      P  +PR          N+  ++   
Sbjct: 178 TLDTLEQLMQHECLGYNNATPSQV----WTFEPAFPGAKPRAVSPRGRFSSNNGQAMRDA 233

Query: 235 CVLGSGIALLPDYIVKD---NPNLV------RIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            + G G+ALLP +IV +   N  LV      R ++DVI      Y  Y  A   + K+KA
Sbjct: 234 ALRGQGLALLPLFIVAEDLKNGRLVDAAPGLRPLDDVI------YAMYSRAAAMSPKVKA 287

Query: 286 F 286
           F
Sbjct: 288 F 288


>gi|289650318|ref|ZP_06481661.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 302

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNNEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L  H+ + +G           W   V    G+P I      ++ N+   +    V G G
Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP +IV     + +LVR+++D+     T+   YP+  + +  ++AF  F+
Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287


>gi|21232109|ref|NP_638026.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21113856|gb|AAM41950.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 304

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 134/287 (46%), Gaps = 14/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  VAR GSFT AA QL +SQS++S  +  LET +GI+L  R  R +++TE G +
Sbjct: 12  NDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAGMR 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    +++     L     KP+G +RI T        L   L + L  YPD++++
Sbjct: 72  LFDTVAPRLEEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSKVLPDYPDLKVE 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    DI  +  D  +RL   +    +         M   AAP Y  +   P    E
Sbjct: 132 ITVDYGLADIVAERYDIGVRLGDQVAKDMIAVPISPRQRMAVVAAPSYFVHHTIPAVPAE 191

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +HN I     T G L+P   E       V R  G+        N   ++++  + G+G
Sbjct: 192 LAQHNCIGLRLPTHGGLLPWDFEKDGREQKV-RVDGQ-----WTFNGSSAMLRAALAGAG 245

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           +A LP+ +V D+     L R+++D   P    Y  YP   +++  LK
Sbjct: 246 LAFLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALK 292


>gi|218515778|ref|ZP_03512618.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 225

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 104/193 (53%), Gaps = 1/193 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E+G++L  R  R L+ T+ 
Sbjct: 2   LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSATDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +S+    +E   + L E+  +P+G +RI+  +  G + LQ  + + L  YP  
Sbjct: 62  GRLYYEESSQALRTIEGANLRLAEARAEPAGTIRISAPVGFGGHFLQDAIFDLLSTYPKS 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++  +  D A R    ++ S+LI RKL + H    A+P YL     P  
Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRT-GILEDSTLIARKLGSTHRLLCASPDYLARRGAPDR 180

Query: 183 IQELDKHNLITFG 195
             +L +H+ +  G
Sbjct: 181 PADLVRHDCVVAG 193


>gi|194292454|ref|YP_002008361.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193226358|emb|CAQ72307.1| putative transcriptional regulator, LysR [Cupriavidus taiwanensis
           LMG 19424]
          Length = 312

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 22/286 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +GS + AA +L+LS+S +S ++  LE  +G  L  R  R L LT++G+      
Sbjct: 10  FVTVVEAGSISEAARRLNLSKSVVSDRLVELERGLGATLLRRTTRKLLLTDEGNAFLDRA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  ++E    ++ E   + +G LRI+  +  G+  L   L  FL  +P++++ L LD+
Sbjct: 70  TRIMREVEEASTDVAERRGRLAGPLRISAPVTFGRMHLGPALYPFLAKHPELELTLDLDD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D + D  D  +R   P++ S L+  +L        A+P YL +   P S ++L  H 
Sbjct: 130 RRVDAAADGYDAVVR-HGPLEDSRLVAWQLAPSRRLLVASPAYLDHRGTPASPEQLRHHR 188

Query: 191 LITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            I +   + +   D+     +    V  PI       L+VN+   +      G GIALLP
Sbjct: 189 GIFY---LNRGAADWRLQGKDGTEIVRAPI------ALRVNNGDMMRDAAEAGLGIALLP 239

Query: 246 DYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAF 286
            +I    P++ R    V+         ++Y  +P+  +   +L+AF
Sbjct: 240 TFIA--GPSIRRGTLAVVDIGLQAIPESIYIAHPDGRRAPARLRAF 283


>gi|171320289|ref|ZP_02909343.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171094465|gb|EDT39525.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 299

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 136/292 (46%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +F  AA++L ++Q ++++Q+  LE  V ++LF R  RGL LT +G +
Sbjct: 14  NALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDVVEVQLFRRLPRGLALTREGLE 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S V   L+           +P+  L ++TT       L   L +F  L+PDI+++
Sbjct: 74  YF---SSVQRALQIISDATDALGERPT-VLAVSTTPSFASKWLIPRLSDFGRLHPDIEVR 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D +      D  D AIRL KP   + L    L  + + A A+P  L       +  +
Sbjct: 130 VIADERLASFRADGVDIAIRLSKPPFPAGLAAELLAPLDVFAVASPTLLDGGPPIRTPAD 189

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    DL P+ +E        D P   PR S     S L+I    V G GIAL 
Sbjct: 190 LSTHALLHDAHDLWPEFIEKLGGKGQAD-PTKGPRFS----QSLLAI-DAAVAGQGIALT 243

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + +V+ +     L R+ +     S   Y  +P+A  ++  L+A R ++F +
Sbjct: 244 SEPLVERDIAEGWLRRVFDFSFPMSLGFYVVFPQANAHSEALQAMRRWLFAQ 295


>gi|288934538|ref|YP_003438597.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889247|gb|ADC57565.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 306

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 137/296 (46%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + +KL +R  R L +T  G+
Sbjct: 4   FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPDIQ 
Sbjct: 64  VYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPDIQF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  D  DC +R  + I   SLI R +  + +  Y AP Y++    P   +
Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGE-ITDQSLIARHVGDLQIGVYVAPRYVERLGAPAHPR 182

Query: 185 ELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL    H ++ F    P    D   L +    I       L V+   + ++  + G G+ 
Sbjct: 183 ELQNTDHRIVGFVS-SPSRKIDPLVLRSESEQIEITGNYVLAVDDGNAYLEAGLAGLGVI 241

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT--------VYFCYPEALKNTGKLKAFRNFI 290
            LP Y+   +  +       + P FT        ++  +P      GKL+ F ++I
Sbjct: 242 ALPIYMAAAHQAV-----GALIPLFTQWRISPMPLHLAFPPNRHVNGKLRVFIDWI 292


>gi|229528055|ref|ZP_04417446.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229334417|gb|EEN99902.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|327486018|gb|AEA80424.1| Transcriptional regulator [Vibrio cholerae LMA3894-4]
          Length = 301

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 135/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +T G +     +      T++ P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 TDHRCLT-GSVKRWSYQHKETKQTLEVPVDGD----LQCKNGRVLVRSALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVDFSLIYHKDKYQPVRLKRFIEF 290


>gi|260753021|ref|YP_003225914.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552384|gb|ACV75330.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 355

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 137/296 (46%), Gaps = 18/296 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA S SF+ AA  L LS+ ++S+ IS LE  +G  L +R +R L+LTE G
Sbjct: 6   DFEAWAIFAKVAESNSFSKAALALGLSKGTVSKAISRLEERMGTSLLHRTSRHLSLTESG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  + E+ E +  P G +RIA+ I  G   L   L EFL  YP + 
Sbjct: 66  RVALTRATHLLEEGEAIEAEVSEDANNPYGVVRIASPISFGIQALGPILPEFLAEYPRVG 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D A+R+   +  SSL  R+L +I     A+  YL     P   
Sbjct: 126 IDLHLSDSRVDVIAEGFDIALRMGD-LPDSSLRARRLFSIRRPVVASRAYLDRHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLG 238
           +EL +H +I +  +    +  F+       P  E R+       + V++    M   + G
Sbjct: 185 RELSQHEVIIYSHIEHPHIWRFS------HP-EEGRVEVKVDGRVHVDNGDVAMGPLLSG 237

Query: 239 SGIALLPDYIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA  P++ +    +D   L  +  +   P + ++   P       +++A   F+
Sbjct: 238 IGIACQPEFFIWQALRDG-VLEELFPEWTIPPYGMFLLTPPGRARPARVRALLGFL 292


>gi|296136480|ref|YP_003643722.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
 gi|295796602|gb|ADG31392.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
          Length = 301

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 131/291 (45%), Gaps = 11/291 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+  +V R+ S T AA QL +S S++ R+I+ LE  +G+ LF RHA G  LTE
Sbjct: 4   NLNWDDVRLLLLVVRTHSLTAAAVQLGVSPSTVGRRIALLEGALGVTLFVRHASGYRLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      V   +   Q    ++   P G +R+AT   L   LL          YP 
Sbjct: 64  DGASLLEDARRVEDAIVQLQGRAADAGSTPRGHVRLATNEALANLLLLPRWAALAPRYPQ 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+      D+    AD A+RL +P ++  L  RKL       YAA   L   R+P 
Sbjct: 124 LVLELVTGAAIQDLYRRDADLALRLVRP-EAGGLTVRKLGVQAYAVYAAKGLLPQARKP- 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               L K   I +   I   ++   W        PI       L  NS  + +   V G 
Sbjct: 182 GKAGLAKLPWIGWDPSIQHLVQ-ARWQREQFAHAPI------TLTANSLFTQLHAAVQGL 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A+LP YI   +P L+R +      S  ++    + L++  +++   + +
Sbjct: 235 GLAVLPCYIADPHPQLMRCLSPTQCVSQEIWLVIQQGLRDAPRVRVIADMM 285


>gi|260775841|ref|ZP_05884737.1| probable transcriptional regulator protein LysR family [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608257|gb|EEX34426.1| probable transcriptional regulator protein LysR family [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 298

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 146/292 (50%), Gaps = 18/292 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++VF  V  +GSF  A++ L +  +++SR++  LE  +G+KL +R  R L+LTE+G  
Sbjct: 4   NDIKVFISVVEAGSFAGASQFLAMPSTTVSRKVVQLEENLGVKLLHRSTRKLSLTEEGRH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             ++  +    LE     ++++  +P GK+RI++  D     +Q  + EFL  YP+I I+
Sbjct: 64  YFQLCQQHLVALEEANDLVRQAQSEPKGKIRISSPFDFAVQYVQPWITEFLKAYPEISIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLS 182
           L   +  +++  +  D A R  + +Q SSLI R++   H    A+P +LK   N + P  
Sbjct: 124 LDTSDSYVNMVENRIDVAFRSGQ-LQDSSLIARRIGPKHSVCCASPDFLKAAGNIKHPED 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSGI 241
           +  +D         L+ + + +  W  T         +S    ++ +  I++  + G G 
Sbjct: 183 LANVD-------CLLMSQSLSNNQWHFTKQEQHYPINVSGKYASTSMHLIIESALNGLGA 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +P  +VK   ++  LV++++D  TP   ++  Y      T   KA R FI
Sbjct: 236 AYVPFALVKTHLESGQLVQVLQDYETPKSNMFVIYQSHKYMT---KAIRLFI 284


>gi|126736766|ref|ZP_01752504.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           CCS2]
 gi|126713737|gb|EBA10610.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           CCS2]
          Length = 301

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 127/257 (49%), Gaps = 7/257 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  V   GS + AA  + +S +  S +IS LE  +G++LF R  R LT TEQG  
Sbjct: 5   DNIQTFVRVYELGSMSAAARDMRISAAVTSARISQLEQHLGVRLFQRTTRSLTATEQGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +V   + + + ++ + +  P G L +A  + +G+ L+  ++ EFL LYPDI ++
Sbjct: 65  FYGGACDVLEAVASAETQIVDITDNPKGSLYVAAPLGVGRRLIAPHVPEFLRLYPDINMR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A  L +P + S+L  RK+  +     A+P Y++    P     
Sbjct: 125 LRLTDRKVDLTTEGLDLAFFLGQP-EDSNLRIRKIADVQRILCASPAYIRTKGNPADGDA 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           L  D H  I   +L    + +F W           R++   + +    +  + + G+GI 
Sbjct: 184 LIADNHECI---NLRYPGVAEFQWRLMTGEGAKRFRVTGRFESDDGDVLTDWALSGNGIV 240

Query: 243 LLPDYIVKDNPNLVRIM 259
           + P + V D+    R++
Sbjct: 241 MKPLFEVSDHIKAGRLV 257


>gi|157371963|ref|YP_001479952.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323727|gb|ABV42824.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 297

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 143/293 (48%), Gaps = 25/293 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V    SFT AA+ L L +S+++  I  LE  + ++L  R  R ++ T  G  
Sbjct: 5   DAMRLFTRVVEQRSFTQAAQDLALPRSTVTDAIKQLEARLQVRLLQRTTRHVSPTLDGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   +E    E+  +  KP G LRI     L ++ L   L +FL  YPDI++ 
Sbjct: 65  YYQRCLTILADIEDA--EMAFAGAKPRGLLRIDVHGTLARHFLLPGLPDFLAQYPDIELF 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D   +  DC IR+ K ++ S ++ R+L  +     AAP YL+    PL I E
Sbjct: 123 MSEGDRLVDPVREGIDCVIRVGK-LKDSDMVARRLGELEEVTCAAPDYLQRFGTPLGIDE 181

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPR---ISC-LQVNSYLSIMQYCV 236
           L+ H ++ F     G ++P    +FN         G P+   + C + V++  S++    
Sbjct: 182 LEGHRMVGFRSSASGSIMPL---EFNV-------AGRPQQLILPCTVSVSAAESLVAAAR 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +G GI  +P Y ++D+    +L+ ++    +    V   YP + + + +++ F
Sbjct: 232 MGLGIIQVPRYHLRDDLASGSLLPLLPQFPSTPMPVSLLYPRSRQLSPRVRVF 284


>gi|332991540|gb|AEF01595.1| LysR family transcriptional regulator [Alteromonas sp. SN2]
          Length = 299

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 14/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +++F  VA + + + A  +  LS +  S  +S LE  +G++L +R  R ++LT++G +
Sbjct: 5   DYVKLFTRVAATQNISKAGAEFGLSSAVASAHLSKLEESLGVRLIHRTTRKVSLTDEGEE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V    +   +       KPSGKLRI   +      L   L EF+ ++PD+ ++
Sbjct: 65  FLPKARDVLVSADIA-VSSVRGGAKPSGKLRITAPVSFSHIHLIPALNEFMGIFPDLSVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +DI     D AIR    ++ S+LI RKL   +    A+P YL+    P + + 
Sbjct: 124 LRLSDTIVDIVEGGFDIAIR-NAELKDSALIARKLAIDNRIICASPEYLEKHGRPATPEA 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KHN I         + + NWL    + +   +       ++  ++   CV G GI + 
Sbjct: 183 LPKHNCINL-------IGNDNWLFRTSKGLLNIKTRGAFTTDNGKAVCDACVNGMGIVMC 235

Query: 245 PDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +I  ++     LV+I+ED  +    +++  YP +     K++AF ++
Sbjct: 236 STWIAYEHLRAGTLVQILEDYPLEADASIWAVYPSSKLVAPKVRAFIDY 284


>gi|224825559|ref|ZP_03698664.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602480|gb|EEG08658.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 300

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 16/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GS +HAA+ L +S++ +SR ++ LE   G +L +R  R L+LT  GS++ 
Sbjct: 7   MRVFVEVAERGSLSHAADSLDMSRAMVSRYLAELEEWAGARLLHRTTRKLSLTSAGSEML 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +  Q  +      P G LR+  ++ LGQ+ L   + +++  YP   + + 
Sbjct: 67  PRCRQMLALEDEMQAAVTTPEAAPRGILRLTCSVWLGQSYLARAVADYVKRYPATAVDMQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +++  +  D AIR+   +   +LI RKL        A+P YL+    P   ++L 
Sbjct: 127 LLNRSVNLVEEGIDLAIRITNDLD-PNLIARKLGLCRSVVCASPAYLREHGTPQRAEQLA 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            HN +T   FG  +        W  + D +P+  P    +  N   ++++    G GI +
Sbjct: 186 LHNCLTYSYFGKSL--------WAFSRDGQPVSVPVGGNVSANETAALLEAARQGVGITM 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P        D   LV +++D       +Y  Y         L+   +F+
Sbjct: 238 QPLQAAAPWLDTGELVAVLDDYRPRDLGIYAVYASRRHMPATLRTMLDFL 287


>gi|330965213|gb|EGH65473.1| LysR protein [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 306

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 138/294 (46%), Gaps = 17/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + ++L  R  R + +T  G+  +
Sbjct: 1   MQAFARVVETGSFTKAAGTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGAVYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +  L  ++  P G+LR+     L   LL   +  F   YPDIQI + 
Sbjct: 61  ERVVRLLAEMDDAETSLSGAASLPRGRLRVDVPSPLASMLLMPAMPAFHARYPDIQIDMG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC +R  + I   SL+ R +  + +  Y AP YL+    P    +L+
Sbjct: 121 VSDRIVDLIGENVDCVVRGGE-ITDQSLMARHVGDLQLGVYVAPGYLQRMGTPAHPHDLE 179

Query: 188 K--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              H ++ +     G  +P  M        V    G   ++    N+Y++     + G G
Sbjct: 180 NSSHRIVGYLWARTGKALPYAMHRDGEQVRVQ---GLYTLTVDDGNAYIAA---GLAGMG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           I  LPDY+ +      +LV + +D    S  +Y  +P     + K++ F +++ 
Sbjct: 234 ILWLPDYMARPYLARGDLVPLFQDWQLDSMPMYVAFPPNRHVSIKVRVFIDWVI 287


>gi|326325971|ref|YP_004250780.1| putative transcriptional regulator, LysR family [Vibrio
           nigripulchritudo]
 gi|323669022|emb|CBJ93064.1| Putative Transcriptional regulator, LysR family [Vibrio
           nigripulchritudo]
          Length = 296

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 139/301 (46%), Gaps = 27/301 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R    V  +GSFT A+E+L +S+S  S+ ++ +E ++G+KLF R  R L++ + G +
Sbjct: 5   DGMRTVVAVVETGSFTAASERLGISKSLTSKYVNLVEVQLGVKLFLRTTRKLSVNQSGYE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +V  + +    ++  +++  SG LRI  +    + +L   + EF   YPDIQI 
Sbjct: 65  YYLQAQQVLARFDQLHSQIHSANMSASGSLRITASQGFAEEMLSPMIPEFHTCYPDIQID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+ N+ +D+     D A R  + +  SS   RK+V++    YAAP   K C + + + +
Sbjct: 125 IIVTNQKLDLVEHGIDIAFRAGQ-LDDSSFNYRKIVSLQSSVYAAPQLAKQCGDGMELTQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISCLQVNSYLSIMQYC 235
           L              C+ D N  A    P+               + L+ NS   + Q  
Sbjct: 184 L-------------PCLIDNNLHANARWPVDHSFNQNNDRNLAVHAVLKSNSPRLLRQLT 230

Query: 236 VLGSGIALLPDYIVKD--NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   G + +PD I        L++ ++   TP  + ++  Y        ++K F +F+  
Sbjct: 231 LSAVGASYIPDIIAARYVKKGLLQKLDVGFTPLKYPLHALYRGGDWQPERVKVFLDFVTS 290

Query: 293 K 293
           K
Sbjct: 291 K 291


>gi|312882433|ref|ZP_07742174.1| Transcriptional regulator, LysR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369833|gb|EFP97344.1| Transcriptional regulator, LysR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 298

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 140/286 (48%), Gaps = 24/286 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +   V  S SFT AA  L +++S++SR+++ LE  +G++L  R  R L LT +
Sbjct: 1   MDLNAIHILVKVVESRSFTQAAIVLDMTKSTVSRKLADLEQALGVRLITRSTRSLVLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++   L   +  + E+     G L++   +++G  +L   + +FL  YP++
Sbjct: 61  GEAFYHSCQQILELLNQAEATVSENQALVKGPLKVVLPVEVGHQVLGEYIHQFLKQYPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L N+++DI  +  D  +++ + +  SSL+ R L +      A+P YLK   +  S
Sbjct: 121 TMNLELTNREVDIIGEGIDLYVQIGELV-DSSLVSRHLTSSKRVLVASPEYLKKFGQIRS 179

Query: 183 IQELD-KHNLITFG---------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
            ++L   H +I            D  P+  E F    T+D P        L+VN+  + +
Sbjct: 180 RKDLSPPHQMIDIENNAARLPKWDFQPESGESF----TLDLPCQ------LKVNTITACL 229

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           + C+   G+A+LP+++ +++     L+ ++ +   P   V   Y +
Sbjct: 230 KSCLDSLGVAVLPEFVCREHFKTGRLIHLLPEYAMPEVDVSLVYAD 275


>gi|149922574|ref|ZP_01911004.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149816601|gb|EDM76096.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 314

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 137/300 (45%), Gaps = 34/300 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +ARSGS   A ++L +S S+++R++ GLE  +  +LF R   G TLTE 
Sbjct: 1   MDWDDLRHFLALARSGSVRAAGKRLRVSHSTVARRVEGLEARLRTRLFDRSRDGYTLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      +   +++ + EL     +  G   I        +LL   L  FL  +P I
Sbjct: 61  GRRMLARAEGIEGAVDSLERELVGQDERLEGTASITCCDHWIADLLVIGLGPFLAAHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q+ +D++  D+S   AD AIR   R    +  L+  +L  I++ +Y    +       
Sbjct: 121 ELQVAVDSRLFDLSKREADIAIRATARGETPAEHLLGVRLQPIYLASYVGAGH------- 173

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL---------QVNSYLSI 231
             ++ LD                D  WL   D  +    ++           + +S+  +
Sbjct: 174 --VERLDPEG------------PDARWLGFDDARVQRAMVATSAYPALPLWGRFSSFELM 219

Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290
           ++    G G+A+LP Y+    P+LVR+  D       ++  C+P+ L++  +L+A R  I
Sbjct: 220 VRATRQGLGLAMLPTYVGDRAPSLVRLAGDTPRHVGELWLVCHPD-LRDNARLRAIRAKI 278


>gi|121587818|ref|ZP_01677576.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121547919|gb|EAX58002.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
          Length = 309

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  + ++L  R  R ++LT +G
Sbjct: 17  ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTLNVRLLNRTTRKISLTTEG 76

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP + 
Sbjct: 77  DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYPKVN 136

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N     +I
Sbjct: 137 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPINTI 195

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L++H+ +    L +P           V   +     S    NS L +M     G G+ 
Sbjct: 196 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 253

Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  +++   P+  LVR+  D    S T+   YP       +++ F +++
Sbjct: 254 SIASFLIDKLPDASLVRLFPDFYQVSTTMNILYPSRKNLPPRVRLFIDYL 303


>gi|59801814|ref|YP_208526.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA
           1090]
 gi|194099271|ref|YP_002002365.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae NCCP11945]
 gi|239999542|ref|ZP_04719466.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae 35/02]
 gi|240014718|ref|ZP_04721631.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae DGI18]
 gi|240017166|ref|ZP_04723706.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae FA6140]
 gi|240081195|ref|ZP_04725738.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae FA19]
 gi|240113408|ref|ZP_04727898.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae MS11]
 gi|240116244|ref|ZP_04730306.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID18]
 gi|240118530|ref|ZP_04732592.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID1]
 gi|240124076|ref|ZP_04737032.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID332]
 gi|240126307|ref|ZP_04739193.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae SK-92-679]
 gi|240128741|ref|ZP_04741402.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae SK-93-1035]
 gi|254494261|ref|ZP_05107432.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|260439941|ref|ZP_05793757.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae DGI2]
 gi|268595356|ref|ZP_06129523.1| LysR family transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268597305|ref|ZP_06131472.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268599479|ref|ZP_06133646.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268601911|ref|ZP_06136078.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268604242|ref|ZP_06138409.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268682701|ref|ZP_06149563.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae
           PID332]
 gi|268684889|ref|ZP_06151751.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687128|ref|ZP_06153990.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043220|ref|ZP_06568943.1| LysR family transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|293398545|ref|ZP_06642723.1| LysR family transcriptional regulator [Neisseria gonorrhoeae F62]
 gi|59718709|gb|AAW90114.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae FA 1090]
 gi|193934561|gb|ACF30385.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae NCCP11945]
 gi|226513301|gb|EEH62646.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|268548745|gb|EEZ44163.1| LysR family transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268551093|gb|EEZ46112.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268583610|gb|EEZ48286.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268586042|gb|EEZ50718.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268588373|gb|EEZ53049.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268622985|gb|EEZ55385.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae
           PID332]
 gi|268625173|gb|EEZ57573.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627412|gb|EEZ59812.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012826|gb|EFE04809.1| LysR family transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|291611016|gb|EFF40113.1| LysR family transcriptional regulator [Neisseria gonorrhoeae F62]
 gi|317164791|gb|ADV08332.1| LysR family transcriptional regulator [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 303

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 12/269 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLEMANSAVSRIVKRLEEKLGVNLLNRTTRQLNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEVPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L   H    A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSHFRVVASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S ++L  H  + F +  P  +   N  A +D      +IS     S   I++  C+   
Sbjct: 180 QSAEDLANHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSSC 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFT 268
           GIA L D++V ++     I E  + P F 
Sbjct: 235 GIACLSDFLVDND-----ITEGKLIPLFA 258


>gi|117921949|ref|YP_871141.1| transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614281|gb|ABK49735.1| transcriptional regulator [Shewanella sp. ANA-3]
          Length = 300

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 142/297 (47%), Gaps = 19/297 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG +  
Sbjct: 7   MRSFIEVANCGSFTKAAEHLDLSRLQVSRHIQEIEQWLSLRLLHRTTRSVSLTLQGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V  ++   +      + +  G +RIAT + LGQ+ L   +  F+ L+P + IQL+
Sbjct: 67  QYCQRVLSEVAAMESRAHSHNTELVGSIRIATPVGLGQHSLFDVVDRFIKLHPKVNIQLL 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +    +  +  D A+R   +P    +LI RKL++I     AAP YL    EPL++   
Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARKLMSIDAVLCAAPSYLAQA-EPLTV--- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             ++L++   LI    + +  L      + +P +  L  N    ++   + G GIA LP 
Sbjct: 181 -PNDLLSHNCLIHSSQQHWQLLKEQQSELIKP-MGNLMANEMGVLVSAALRGHGIAYLPC 238

Query: 247 YIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +   NP      L  ++ +   P  T++  Y   L  + +    R FI   A+ W+
Sbjct: 239 DLA--NPYLASGQLQEVLPEYTAPGQTLWAVY---LSRSYQQALVRAFIDFTAQQWQ 290


>gi|300715483|ref|YP_003740286.1| transcriptional regulator, LysR-type [Erwinia billingiae Eb661]
 gi|299061319|emb|CAX58428.1| Transcriptional regulator, LysR-type [Erwinia billingiae Eb661]
          Length = 303

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 134/293 (45%), Gaps = 22/293 (7%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V  +GSFT AA++L  S    S+ IS LE  +G++LF R  R L  T+ G   + 
Sbjct: 8   RMFIAVMETGSFTAAAQRLGTSHGQASKLISRLEQHLGVQLFRRSTRALAATDVGRAYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +     ++ SS  P+GK+RI+  +  G   L  +L +F   YP I++ +  
Sbjct: 68  KIRVLLADYDALNDSVRNSSDAPAGKVRISAPVTFGTTQLTPHLIDFARRYPGIELDVSF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++  +  D A+R+ K +  SSL+ RKL  I +   A+P YL     P   + L  
Sbjct: 128 ADRAVNVVDEGFDLALRIGK-LADSSLMARKLCDIRIITVASPGYLAERGTPEHWEALAS 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPI--------GEPRISCLQVNSYLSIMQYCVLGSG 240
           H+          C+ D N+      P         G+P    L+ ++    ++  + G G
Sbjct: 187 HD----------CIIDTNFRDPWRWPFQDEKLALQGQPVNGRLKFSNAEVCLKAAIAGLG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP ++  +   N  +V ++         ++  YP A     K + F +++
Sbjct: 237 IARLPSFVAGEALKNKEVVPVLAASEIVPLGLFALYPPAKYLAHKSRTFIDYL 289


>gi|21229763|ref|NP_635680.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766639|ref|YP_241401.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21111254|gb|AAM39604.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571971|gb|AAY47381.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 297

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 114/249 (45%), Gaps = 13/249 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     + R GSFT AA +L +SQS++S  I GLE  +G++L  R  R +  TE G +L 
Sbjct: 9   LLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEATLGLRLLTRTTRSVAPTEAGERLI 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +  + ++E     L E    P+G +RI  T    + +L   L   L  YPDI+++L+
Sbjct: 69  QTVAPRFAEIEEALSALSEMRDTPAGSVRITATDYAAREILWPKLAVLLRQYPDIKVELV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +DN   DI  D  D  +RL   ++   +  R    + M   A+P YL+    P + Q+L 
Sbjct: 129 VDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMALIASPAYLERRPLPKTPQDLT 188

Query: 188 KH-----NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            H      + T G +       + W L    R I       L  NS    +   + G GI
Sbjct: 189 AHLCINLRMTTAGGI-------YAWELEKDGREIAVRVEGQLTFNSIYEALDAALQGFGI 241

Query: 242 ALLPDYIVK 250
           A + + + +
Sbjct: 242 AFVQEDLAR 250


>gi|330968179|gb|EGH68439.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 302

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 140/290 (48%), Gaps = 10/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPVFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPTYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  + +G           W      +P+       ++ N+   +    + G GI  
Sbjct: 183 DLHSHECLPYGH-----SRHVQWRFQGAGKPVSLNVSGRMRANNGELLKDAALAGLGITY 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +IV D     +LVR+++++     T+   YP+  + +  ++AF  F+
Sbjct: 238 LPTFIVGDALRAGSLVRVLDELRPEPLTLSAVYPQHRQASRPVQAFIEFL 287


>gi|192293587|ref|YP_001994192.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192287336|gb|ACF03717.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 304

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 5/247 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++R F  +A  GS +  A  L++ QS+++RQ+  LE  VG  L  R  R +TLTE+GS+
Sbjct: 9   ERIRTFVRIAERGSLSAVARDLNVGQSTVTRQLQELEAAVGAPLLSRTTRRVTLTEEGSR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   LE    E   +S  P+G +RI+ T   G       +  F   YPDI I 
Sbjct: 69  YYARCVQILRLLEQAGDEALGASGAPAGTIRISCTASFGVLHASRLIFAFQDRYPDIGID 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ +D+  +  D AIRL  P+  SSL  R L   H    A+P YL     P S Q+
Sbjct: 129 FGLTDQRVDLVREGVDLAIRL-APLADSSLKLRTLGHSHRLLVASPDYLAAHGRPTSPQD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  +    ++     D   L   D+ I   P    L+V+  L+  +  + G GIA  
Sbjct: 188 LSNHQGVR---MVNVAGSDLLVLQGPDQEIHRVPFGGRLRVDHGLAAREAMIAGRGIAAT 244

Query: 245 PDYIVKD 251
             ++V D
Sbjct: 245 HRWLVAD 251


>gi|146305845|ref|YP_001186310.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574046|gb|ABP83578.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 295

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 118/245 (48%), Gaps = 4/245 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V + GS   AAE L +S S++S+QI  LE   G+ L +R  R LTL+E G++ 
Sbjct: 6   RMALFATVVQKGSMVAAAEVLGMSASAVSQQIRRLEEATGVSLLHRTTRKLTLSEAGAQF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++    E  +  L E    P G+LRIA  +     +L   L   L  +P + ++L
Sbjct: 66  YESCRQIVELAEQAEQRLAEQRDAPVGELRIAAPVGFSGPVLSEALAPLLSAHPALSLRL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ ID+     D AIR+ + +  SSL+ R +    M   AAP YL     P   Q+L
Sbjct: 126 FFQDEQIDLIEQRIDLAIRVGQ-LDDSSLVARHVADWRMLVCAAPAYLARHVWPTQPQQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
              + I       + ++         R   E RI+C   N+ L+  Q+ + G G++L P+
Sbjct: 185 LDLDWIALNTERSQHLQLHGPGGATQRLRLESRIAC---NNILAARQFTLAGMGVSLQPE 241

Query: 247 YIVKD 251
             +++
Sbjct: 242 PEIRE 246


>gi|71909445|ref|YP_287032.1| regulatory protein, LysR:LysR, substrate-binding [Dechloromonas
           aromatica RCB]
 gi|71849066|gb|AAZ48562.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 295

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 135/293 (46%), Gaps = 19/293 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W  LRVF  +AR G+   AA     SQ ++ R++  LE  +G  LF R   G  LT+
Sbjct: 11  AMEWSDLRVFLAIARVGTLGGAARLSGQSQPTMGRRLRALEAALGCALFQRTNDGFVLTD 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      +       Q +L        G+LRI+ +   G ++L   + +F   +  
Sbjct: 71  EGQSLLPHAEHMEEAALALQRKLAGQPGTLHGQLRISASDWFGAHVLSPLIADFRREHSG 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LI D++   ++   AD A R+ KP +   +IQRKL+ +    YAAP YL       
Sbjct: 131 ISVELITDSRLYSLARREADVAFRI-KPFEEPDVIQRKLMHMEYALYAAP-YLP------ 182

Query: 182 SIQELDKH--NLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVL 237
           + Q  D    +LIT  D     + D  WL  +  +  IG         NS  +    C+ 
Sbjct: 183 APQAGDGKGCSLITM-DSAYAEIPDARWLRKLLPNSSIG------FASNSREAQATQCMS 235

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIA+LP  +    P + ++      P   VY  Y + L++ G+L+ F +F+
Sbjct: 236 GGGIAVLPCLLGDRIPTIQKLDLGEKAPGRDVYLGYHKDLRHLGRLRVFLDFV 288


>gi|300703603|ref|YP_003745205.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299071266|emb|CBJ42584.1| putative transcriptional regulator, LysR family precursor
           [Ralstonia solanacearum CFBP2957]
          Length = 336

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 131/278 (47%), Gaps = 17/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF     +G F  AAE+L LS+S++ + I+ LET +G++LF+R  R   LTE G  
Sbjct: 10  DGVAVFVEAVEAGGFARAAERLALSRSAVGKSIARLETRLGVRLFHRTTRTQNLTEDGQI 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +L   +  L+    + +G+LR+   +  G+  +   L +F   +P ++++
Sbjct: 70  YYERCLRAIEELRVAESLLESGKQEVAGRLRMTMPVLFGRYCIAPILLDFARQHPKLELE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  D  IR     +++ L  R L T      AAP YLK   EP +I+ 
Sbjct: 130 LSFSDRPVDMIAEGFDLGIRSGALGEATGLCARPLATQPKVLCAAPDYLKARGEPDTIET 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239
           L  H+++       +    + WL     P  + R++ +++ S L            V G 
Sbjct: 190 LATHDVLIHW----RTGHPYPWLL----PGADGRLTDVRLASRLRFDDLEVTADAAVAGM 241

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           GIA LP ++V+D      LV + E+    S   +  +P
Sbjct: 242 GIAWLPRWLVRDRIQAGALVALWENRPAASMDSHAIWP 279


>gi|229522580|ref|ZP_04411996.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229340565|gb|EEO05571.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 301

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M    +P Y   C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLTSPTYFTLCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 ADHRCLT-GSVKRWSYQHKETKQTLDVPVDGD----LQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|21241076|ref|NP_640658.1| LysR family transcriptional regulator [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106372|gb|AAM35194.1| transcriptional regulator lysR family [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 317

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 96/191 (50%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L     + R GSFT AA +L +SQS++S  I GLE  +G++L  R  R +  TE G
Sbjct: 25  NFKDLLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEATLGLRLLTRTTRSVAPTEAG 84

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     L E    P+G +RI  T    + +L   L   L  YP+I+
Sbjct: 85  ERLIQTVAPRFAEIEEALSALGEMRNTPAGTVRITATDYAARAILWPKLSRLLRDYPEIK 144

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++DN   DI  D  D  +RL   ++   +  R    + M   AAP YL+    P + 
Sbjct: 145 VEIVVDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMAIVAAPSYLERRPIPKTP 204

Query: 184 QELDKHNLITF 194
           Q+L  H+ I  
Sbjct: 205 QDLTAHSCINL 215


>gi|322833016|ref|YP_004213043.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321168217|gb|ADW73916.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 295

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 13/287 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF   A  GSF  AAE L +S   +++ I+ LE+ +G  L  R  R   LT+ G   
Sbjct: 6   SMNVFVRTADLGSFAAAAEALRISPQMVAKHIARLESRLGTALINRTTRRQHLTDIGRSY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V  + E       E  V PSG LR+   +  G + L   +  +L  YP+ QI+L
Sbjct: 66  YERCKIVLSEAEAADAIALEMKVTPSGTLRVNAPVTFGTSSLAPFITHYLAQYPETQIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D   +  +  +R+ + +  S +I   L    + A A+P YL     P +  EL
Sbjct: 126 TLSDRMVDPVEEGYEVILRIGE-LSDSQMIAYPLQPYRLIACASPGYLAQNGAPETPAEL 184

Query: 187 DKHNLITFGDLIPK--CMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H+ + +G   P+  C   F     +    P G      L+ N + +++   V G G+ 
Sbjct: 185 ATHSCLVYGIWSPQAPCRWQFYQEGRMQEIHPQGR-----LRSNDWRALLHAAVSGYGVT 239

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L P+ ++++  N   LV+++ D   PS  ++   P  L+ T K+++F
Sbjct: 240 LGPEDVLREEINAGRLVQVLPDYDGPSRPMHILTPAGLRQTVKIRSF 286


>gi|56551367|ref|YP_162206.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761013|ref|ZP_04759102.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|56542941|gb|AAV89095.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374632|gb|EER64093.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 319

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 136/296 (45%), Gaps = 18/296 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA S SF+ AA  L LS+ ++S+ IS LE  +G  L +R +R L+LTE G
Sbjct: 6   DFEAWAIFAKVAESNSFSKAALALGLSKGTVSKAISRLEERMGTSLLHRTSRHLSLTESG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  + E+ E +  P G +RIA+ I  G   L   L EFL  YP + 
Sbjct: 66  RVALTRATHLLEEGEAIEAEVSEDANNPYGVVRIASPISFGIQALGPILPEFLAEYPRVG 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D A+R+   +  SSL  R+L +I     A+  YL     P   
Sbjct: 126 IDLHLSDSRVDVIAEGFDIALRMGD-LPDSSLRARRLFSIRRPVVASRAYLDRHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLG 238
           +EL +H +I +  +    +  F+          E R+       + V++    M   + G
Sbjct: 185 RELSQHEVIIYSHIEHPHIWRFSHPE-------EGRVEVKVDGRVHVDNGDVAMGPLLSG 237

Query: 239 SGIALLPDYIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA  P++ +    +D   L  +  +   P + ++   P       +++A   F+
Sbjct: 238 IGIACQPEFFIWQALRDG-VLEELFPEWTIPPYGMFLLTPPGRARPARVRALLGFL 292


>gi|316932453|ref|YP_004107435.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315600167|gb|ADU42702.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           DX-1]
          Length = 307

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 124/251 (49%), Gaps = 9/251 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF  AA +L LS++++S+ ++ LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEALAIFAKVVELRSFAAAATELGLSKATVSKAVTRLENRLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +++    E  + E    S  P G +R+A  +  G  ++   L EFL  YPD+ 
Sbjct: 66  HRLAERAAQLLADGEAAEAEALAQSAAPRGLVRLAVPMTFGVKVIAPLLPEFLTAYPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D  +R+   +  SSL+ R+L  +  +  A+  YL+    P   
Sbjct: 126 IDLHLSDAMVDLIGDGFDAGVRIAS-LPDSSLVARRLCAMPRYTVASKSYLQAHGRPTHP 184

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             L +H  + +  L  P      N        RP G      L+VN+  +++   + G G
Sbjct: 185 MHLAQHRCLGYAYLSTPNTWHYSNDAGDQVAVRPGGP-----LRVNNGEALLPAVIAGLG 239

Query: 241 IALLPDYIVKD 251
           IA LP++IV +
Sbjct: 240 IADLPEFIVGE 250


>gi|308185557|ref|YP_003929688.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1]
 gi|308056067|gb|ADO08239.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1]
          Length = 305

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 124/250 (49%), Gaps = 8/250 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD L    V+A  GSFT AAE+L +S++++S++I  LE   G+ L  R  R + LT  G 
Sbjct: 10  WDHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKELEQIAGVLLVQRTTRSVRLTSAGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL     E + ++E +   +++++    G +RI   +   +  L   + EFL  YP +++
Sbjct: 70  KLVEELREPFARIEQSFFSVRDTAGPVRGLVRITAPVAFARQQLVPIIGEFLRDYPQLRL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ + +S +  D AIR    +  +  +   L        A+P YL     P + Q
Sbjct: 130 QLDVTDRIVSLSSEGFDLAIRHSDTLPETH-VALPLCDTQTVLVASPAYLNQQGIPNTPQ 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           +L +HN + +    P+ +E   W  +   D    + RI  C   N+  SI    + G GI
Sbjct: 189 DLMQHNCLYY----PRGVESPRWRFVTAADGEEVQVRIQGCFATNNSESIRDAALQGLGI 244

Query: 242 ALLPDYIVKD 251
           A+LPD+  ++
Sbjct: 245 AMLPDFSARE 254


>gi|283833315|ref|ZP_06353056.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291070953|gb|EFE09062.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 297

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 132/290 (45%), Gaps = 18/290 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L    +VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLYYLIIVARERSFTRAAAKLGVSQSALSHAIRGLEERLDVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN----LKEFLLLY 119
            +L    S  +  +ET  + L +   + +G +R+     LG++ LQ      L+ FL  Y
Sbjct: 65  ERLINSISPRFDDIETELLALTDVRQRVAGNIRLT----LGEHALQSTVWPALEPFLQAY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ +++ LDN   DI     D  IRL + +    +  R      M    +P Y     +
Sbjct: 121 PDVNVEMTLDNSLTDIVAGRYDAGIRLGEQVAKDMVAVRIGPDWRMVVVGSPAYFSRHGK 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCV 236
           PL+  +L KHN I     +P     + W     +   + RI     L  N+    +   +
Sbjct: 181 PLTPHDLQKHNCINL--RMPTLGGLYAW--EFSKRGQDLRIRVEGQLIFNNLPPRISAAI 236

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            G G+A +P+  V+    +  L +++ED   P    Y  YP   ++T   
Sbjct: 237 AGIGLAFVPEDSVEQAVADGALEKVLEDWCEPFQGYYLYYPSRRQHTAAF 286


>gi|162449039|ref|YP_001611406.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161159621|emb|CAN90926.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 312

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 13/252 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  V    SFT AA +L +S+S +S +++ LE  +G +L  R  R LT+T+ G
Sbjct: 20  DLPALLCFARVVERRSFTAAAAELGVSKSMVSTRVARLEERLGERLLVRTTRKLTVTDAG 79

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+   + V   LE     ++ +S    G++R+   +   Q  L   L  FL   P   
Sbjct: 80  MNLYARCARV---LEEAAAAVRGASDADRGRIRLNAPVSFAQMYLAEPLARFLRASPGAH 136

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L+++ +D+  +  D AIR+ K ++ SSL+ R+L T  +H   AP YL+    P   
Sbjct: 137 VELMLNDRLVDLVEERVDLAIRITK-LKDSSLVARQLATTALHVVGAPGYLERRGRPEQP 195

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +L +H+ + +  L  +  +++ +     R   P+  P    L  ++  ++ +  V G G
Sbjct: 196 GDLLRHDCLRYLHL--RVEDEWRFYGAGGRVSVPVSGP----LTASNGTALREAAVSGIG 249

Query: 241 IALLPDYIVKDN 252
           +A+LP ++V ++
Sbjct: 250 LAVLPRFMVDED 261


>gi|152971520|ref|YP_001336629.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956369|gb|ABR78399.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 302

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 139/304 (45%), Gaps = 15/304 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  SG+F  AA  LH+++S++ + I+ LE  +G+ LF R  R   LT
Sbjct: 1   MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G + +R   E   ++   +  LQ    +  G+LR++  +  GQ  +   L      YP
Sbjct: 61  EEGEQFYRQCREALERIREAEETLQRGKDEVQGRLRVSLPVLFGQRCVAPLLFRLSQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +++  +  D A+R+     + SL  R L    M   AA  YL+    P
Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGSLADTGSLRARALGEHGMVLCAAAEYLRQQPAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237
            +I  L++H   T G L    ++ +      D   GE R S    L  + + +I      
Sbjct: 181 QTIAGLNEHR--TLGYLHNGQLQKWQ---LYDPQQGEVRFSPQTWLIQDDFAAIAAAVQQ 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA----LKNTGKLKAFRNFI 290
           G GIA LPD++V     +  L +++       F ++  +PE      K    + A R  +
Sbjct: 236 GMGIAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEGPWLPQKTRAAIDALREGL 295

Query: 291 FLKA 294
            L A
Sbjct: 296 PLTA 299


>gi|28868993|ref|NP_791612.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213968678|ref|ZP_03396820.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301384592|ref|ZP_07233010.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061726|ref|ZP_07253267.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131367|ref|ZP_07257357.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852233|gb|AAO55307.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213926611|gb|EEB60164.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 301

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 140/290 (48%), Gaps = 10/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPVFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPTYLAERGTPQQPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  + +G           W      +P+       ++ N+   +    + G GI  
Sbjct: 183 DLHSHECLPYGH-----SRHVQWRFQGTGKPVSLNVSGRMRANNGELLKDAALAGLGITY 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +IV D     +LVR+++++     T+   YP+  + +  ++AF  F+
Sbjct: 238 LPTFIVGDALRAGSLVRVLDELRPEPLTLSAVYPQHRQASRPVQAFIEFL 287


>gi|146342446|ref|YP_001207494.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146195252|emb|CAL79277.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 305

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 10/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L V   VA SGS + AA  L +S + +++ ++ LET +G KLF+R  R LT+TE G +  
Sbjct: 8   LEVLSKVAGSGSLSGAARLLGMSPTMVTKHLAALETRLGTKLFHRTTRRLTITEAGRRYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   V    E  +  +    V+P G LR+   +  G   +   L  F  LYP + ++L 
Sbjct: 68  DLAERVLGDFEAAESAIAADRVEPRGVLRLNVPLAFGTRQIAPLLAGFAALYPGVSVELG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D AIR+   ++ S+L+ R+L    M   AAP YL     P +  +L 
Sbjct: 128 LNDRLVDLIEEGWDLAIRIGT-LKDSTLVARRLAPCRMMICAAPSYLTTHGTPRTTTDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +            W       I       L+ N+  +++   + G G+   P +
Sbjct: 187 AHNCLGY---TLAAAGPSRWRMGGKAAIDVTVSGNLRANNGDALLAAALAGQGLIYQPTF 243

Query: 248 IVKD---NPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFI 290
           IV D      LV +  DV  PS    V+  Y      + K++AF +++
Sbjct: 244 IVGDELRTGRLVPVTLDV-PPSDLLAVHAVYLPDRTPSAKVRAFIDYL 290


>gi|330897630|gb|EGH29049.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 344

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 136/296 (45%), Gaps = 13/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A   SF+ AAE+L +  S++SR I  LE ++GI LF R  R L LTE G    
Sbjct: 49  LAAFVESANGNSFSKAAERLGIKASTVSRYIKDLEQDLGIALFNRSTRKLALTEGGQTFL 108

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V  +L   +      +  P G+L+++      ++ +   + EF+  YPDI + L 
Sbjct: 109 YHAQKVLFELSEAKAATSALNQNPRGRLKVSLPPAFARHHILPLVGEFIKRYPDITLDLC 168

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+   +D+     D AIR+ + + +S+L  RKL  +      +P +     +P    +L 
Sbjct: 169 LEESQVDLIATGIDLAIRIGR-LANSNLKARKLAEVKTFLCVSPEFAARYSQPDCPDQL- 226

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             +++  G   P+ +   N    V  P+G    + L +N   + +     G G+ALLPD+
Sbjct: 227 PVDMMIIGRQCPEALIWANDNEQVSLPVG----AVLWINDLDAQLIAVSSGLGMALLPDW 282

Query: 248 IVKD---NPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +      +  LVR + D        S  V+F YP     + K++ F +FI  +  D
Sbjct: 283 LASASLRDGRLVRWLPDWEIKTSQESGAVWFVYPPKRIVSSKVRCFIDFIAERVVD 338


>gi|325919259|ref|ZP_08181303.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325550264|gb|EGD21074.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 311

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 139/294 (47%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA    F+ AA+ L  S +S++RQ++ LE  +G +L  R  R ++LT  G+ 
Sbjct: 5   DAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAGTA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   L+  +  +   +++P+G LR+   +  G   L   L  F   YP +++ 
Sbjct: 65  YYQRCLQLLADLDDLEATVGAQALEPAGVLRVNAPVSYGIERLAALLPGFRARYPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L ++ +D+  +  D AIR+ R+P  + +LI R+L  + +   AAP YL     P    
Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APTLIARQLGKVRLLTCAAPAYLARAGTPSHPS 182

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L  H  + +     GD +     D +    +           L+ N+   +    V G 
Sbjct: 183 DLAGHECLLYHYSPNGDEVRFHGPDGDTTVRIH--------GGLRANNGHVLSAAAVAGQ 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+ PD++  D+     LVRI+ +       ++  Y        K+++F +++
Sbjct: 235 GIAMQPDFLADDHLAAGRLVRILPEYELADIGIFAVYTSRSHLAPKVRSFIDYL 288


>gi|270262476|ref|ZP_06190747.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043160|gb|EFA16253.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 300

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 133/283 (46%), Gaps = 5/283 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LRVF  VA  GSF  A+  L + ++++S  I  LE E+G +LF+R  R + LT  G  L
Sbjct: 6   RLRVFIQVAEVGSFIRASHILLMPKTTVSAAIQQLEHEMGARLFHRTTRKVQLTSDGELL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +       Q+ +    G+L +     + + ++   L +F L YPDIQ+ L
Sbjct: 66  LEKARSLLFDVNVLDTLFQQKNGPIGGRLTVDVPSRIARRIIVPALPDFFLQYPDIQLFL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ ID+  +  DC +R+   +  SSL+ + L  + M   A+P YL+    P    +L
Sbjct: 126 SASDRSIDLIQEGVDCVVRV-GSLSDSSLVSQPLGRLSMVNCASPDYLRRYGTPEHTDQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D+H ++ +        E + W     + + +   S + VN+  + +  C+ G G+   P 
Sbjct: 185 DEHWVVGYAQPNLAGAETWQW-EQEGQSVEKTLRSRVTVNNAENYIGCCLAGLGMIQNPR 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + ++   D+ +L  I+      + ++   YP   + + +  AF
Sbjct: 244 FDLQHHLDDGSLREILPQARPSAMSIALLYPHRRQRSARFTAF 286


>gi|254249620|ref|ZP_04942940.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124876121|gb|EAY66111.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 359

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 11/296 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 53  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 112

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LR+ +T   G+ ++   L++F   YPDI + L+L
Sbjct: 113 CRPGIEHLAQALEDMRELRSGPPSGHLRVGSTPGFGRKVIAPLLRDFHAQYPDITLDLLL 172

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++  D S D  D A R  + ++ S+++ R+L+ + M   A+P Y      P  + +L +
Sbjct: 173 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAHRHGLPRHVDDLAR 231

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDY 247
           H  I       +  E   W   +D      + +     N    +++  + G GIA LP Y
Sbjct: 232 HRCINLCTASGRVTE---WEFRIDGVTQRRQFAAHHTFNDIDLVVRAALDGLGIAQLPAY 288

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298
            V D   +  L+  +          Y CY        +++ F +++    +ARD +
Sbjct: 289 QVCDLLADGRLLSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTRARDLQ 344


>gi|293395490|ref|ZP_06639774.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422174|gb|EFE95419.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 310

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 10/291 (3%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL   Y   R    GS + AA  L LSQ ++S+QI  LE ++G  L +R  R +T TE 
Sbjct: 2   DKLNAMYTFVRVVELGSLSAAARSLQLSQPAVSQQIVSLEQQLGTLLLFRTTRSVTATEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++    +   +   +  L   S +  G LR+      GQ  +      F  L+P++
Sbjct: 62  GQRYYQQIKPILAAVVEVEDALHGLSQRLQGNLRVHAPSGFGQAHIAPLAVAFQQLHPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L+LD++  D+S +  D AIR  + + +   + R+L ++     AAP YL     P S
Sbjct: 122 RIELLLDDRLADVSAEGIDVAIRFGE-LHAPGTVARRLGSMQRMLVAAPRYLATQGTPQS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QEL +H  + F       ++D   L         P     + N+  +++     G GI 
Sbjct: 181 PQELSQHPHVRFSG---AAIDDTLTLIGPQGATLIPLRPVFRANNSFALLAALEGGLGIG 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                ++       +LVR++E+   P   ++  YP A     K++A+ +++
Sbjct: 238 GAQRPLIGRQLAQGSLVRVLEEYHYPPMALHAVYPAARFIPAKVRAWVDYL 288


>gi|258543561|ref|YP_003188994.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634639|dbj|BAI00615.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637695|dbj|BAI03664.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640749|dbj|BAI06711.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643804|dbj|BAI09759.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646859|dbj|BAI12807.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649912|dbj|BAI15853.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652902|dbj|BAI18836.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655956|dbj|BAI21883.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 316

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 125/268 (46%), Gaps = 8/268 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VA +GSF+  + +  +SQ +ISR I+ LE   G  LF R  R LT+TE G  
Sbjct: 17  SALHSFVRVAATGSFSAVSRETGVSQPTISRHIALLEAHYGTTLFARTTRSLTMTEDGRS 76

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     EV   LET +  L       SG +R+  T   G  L +  + E L  +PD+ I+
Sbjct: 77  LLPHAYEVLEILETAETVLGRRRASVSGLVRLGVTTAFGLCLTR-RIGELLERHPDLAIE 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +++ +   D+  +  D A+R+   I   SLI RKL  +     AAP  L  C  P   ++
Sbjct: 136 VVMRDAFGDLVEEGLDLAVRV-GDIAEGSLIARKLGVVRKWLVAAPSCLNRCGTPTHPRD 194

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++  + +         D+N+    +  +  P  +  + NS  +++     G GI LLP
Sbjct: 195 LPEYPGVVYN--YGSSRLDWNFERDGEESVIAPS-AVFRANSSEAVLYAVESGLGIGLLP 251

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVY 270
           ++ V++   +  L R+  D   PS   Y
Sbjct: 252 EFQVREAVASGRLTRLFADWNIPSLPFY 279


>gi|94312501|ref|YP_585711.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356353|gb|ABF10442.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 310

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 135/291 (46%), Gaps = 14/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +   GSF  AA+QL +S + ++R ++ LE+ +G +L  R  R L+LT+ G    
Sbjct: 7   MRVFAKLVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTDAGETYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S++   +E  +  +   S   SG LR+ T +  G +LL   L+ F  LYPD+   + 
Sbjct: 67  QRCSQILEDVEEAESIVAARSQSLSGTLRLVTPVMFGLHLLPQILERFQQLYPDVVFDVQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ IDI  +  D  + L      S L+ R L++  +   A+P YL+      +  +L 
Sbjct: 127 LSDRMIDIVEEGRDVGVMLSDLGLGSHLVARPLISAEVILCASPGYLREHPPLRNAHDLS 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGIAL 243
            H  I     +P    +  W  T+  P GE     R   L  N+ L+  Q  +   GIA+
Sbjct: 187 NHRAIAMR--LPNA--EHEW--TLSGPEGEVTVPIRPGLLCSNAELA-HQAALTNMGIAM 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L  Y+ + N     L  I+     P   V   YP       K++AF +F+ 
Sbjct: 240 LSSYLARPNIEAGRLTHILPQYQLPRRDVSVVYPSRKFLPTKVRAFIDFLL 290


>gi|170699272|ref|ZP_02890322.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|172064888|ref|YP_001815600.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|170135826|gb|EDT04104.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|171997130|gb|ACB68047.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 305

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   
Sbjct: 6   SMRVFTRIVETGSFTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRISLTEDGQAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V  +++  +  + ++   P G+L++     + + ++   L  FL  +P+I I+L
Sbjct: 66  YERCVGVLREIDDMEAAVSQARNVPRGRLKVNLPPAMAKQIMVPALPGFLAAHPNISIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ ID+  +  DC +R+   +  S +I +++ ++     AAP YL  C  P ++ EL
Sbjct: 126 GVTDRQIDLVGEGVDCVVRI-GALDDSGMIAKRIGSLTTCTCAAPAYLDRCGAPETVDEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
            +H  +    +         W   VD   GE RI      + VN   + ++  V G G+ 
Sbjct: 185 AQH--VAISHISADTGRPRPWDYVVD---GETRIVQMCGTVAVNDADTYIECGVAGIGLI 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               Y+V+    +  L  ++ D   P   +   YP       KLK F +++
Sbjct: 240 KTSLYLVEPYLKSGRLREVLTDFNAPPRPISILYPPNRHTPVKLKIFVDWL 290


>gi|93006367|ref|YP_580804.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis
           K5]
 gi|92394045|gb|ABE75320.1| transcriptional regulator, LysR family [Psychrobacter
           cryohalolentis K5]
          Length = 301

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 137/276 (49%), Gaps = 13/276 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  +  +GS T AAEQL++++S++SR++  LET +G +L  R  R   LT+ G +
Sbjct: 5   EDMAMFVRIVEAGSITKAAEQLNIAKSAVSRRLKDLETRLGSQLISRTTRQSNLTQAGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++  + +  +++    E   +  +  G L++   +  G   L   + E+   +P++  +
Sbjct: 65  YYQKVNNILSEVDALNEETSGAPTRIEGILKMTAPLSFGLMHLNDVIDEYANQHPNLNFE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++  D+  +  +  IR+R+ +Q SS   ++L  I     A+P YL     P ++++
Sbjct: 125 LDFSDRHTDLVEEGFELGIRIRE-LQDSSYQAKRLALIRYTLCASPEYLSKMGTPTTLED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
             KH  + +G      +   + +  +D    + ++   S ++VN+   + +  V G GIA
Sbjct: 184 FAKHEFLQYG------LNKSSTIELIDEQGKKHQVAINSKIKVNNGDFLREMAVKGHGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            LP++I      +  LV IM+    P+   Y  YP+
Sbjct: 238 FLPNFITYKTLASGALVPIMQQYQLPTLNAYAVYPK 273


>gi|91776980|ref|YP_546736.1| LysR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710967|gb|ABE50895.1| transcriptional regulator, LysR family [Methylobacillus flagellatus
           KT]
          Length = 291

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 142/291 (48%), Gaps = 17/291 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++R++  V + G+FT AA  L +S+  +SR++  LE  +G +L  R  R L+ TE G  
Sbjct: 5   EQMRIYAEVVKHGNFTAAARHLGISKQLVSRRVMELEERLGARLLQRTTRKLSPTELGRV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++  + E+  S+ +  G LR++  +     +L   L  F+ L+P++++ 
Sbjct: 65  FFTRCQTILQEIDEAEQEVASSTGELRGLLRLSAPVSFASMVLSPALNRFMQLHPNLEVA 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +DN+ +D+  +  D AIR+ K      LI RKL    +    +P YL     P S  +
Sbjct: 125 LDVDNRVVDLVGEGYDMAIRITKQ-PDEGLIARKLADSALAYCCSPSYLAQHGAPQSPMQ 183

Query: 186 LDKHNLIT--FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H  IT   G+ +    ED   L  +   P+       L+ N    + +  + G GI 
Sbjct: 184 LGRHRCITSKAGEWL---FEDAGELLKLQVHPV-------LRSNHGEVMCEAAIAGLGIV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP++ V+   +   LV+++++       VY  YP   + +  +++F +F+
Sbjct: 234 GLPEFYVRKALETGALVQVLQEYTADIGAVYALYPPHRQASLMVRSFADFL 284


>gi|226952736|ref|ZP_03823200.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|294650058|ref|ZP_06727445.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226836527|gb|EEH68910.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|292824068|gb|EFF82884.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 297

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 133/288 (46%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V   G+F+ +A+ L++S+  +S++I  LE ++ + LF R  R + LT  G K
Sbjct: 5   DCINTFLSVVEHGNFSTSAKNLNISRDLVSKRIQYLENDLKVSLFIRTTRRMNLTPCGEK 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  +LE  + E+      P G+L+I   +   +++L   + +F+  +P I+I 
Sbjct: 65  FYQHAKVMMSELEWAKYEISYDQQYPEGELKINAPLSFSRDVLTDIISDFIQQFPFIKID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +DI     D  +R+   +   +     + T     YA+  YL     P +I +
Sbjct: 125 LYLTDSFVDIYEQQFDLTLRV-DDVADHNFQNTVIGTYKRSFYASKEYLDKKGIPNTIDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KH+++ +           +   T +     P+  C   N+   ++  C  G GI  LP
Sbjct: 184 LKKHDILLYSQKNSHNKITLSRNETTELIQCYPKFIC---NNGDLLLDLCTKGHGIVFLP 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D+I K   D   + R +ED  +P    Y  YP     + KL+ F +F+
Sbjct: 241 DFIAKKYFDAGEISRCLEDYHSPMMNFYALYPNGQNISKKLQIFIDFM 288


>gi|161502022|ref|YP_001569134.1| hypothetical protein SARI_00039 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863369|gb|ABX19992.1| hypothetical protein SARI_00039 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 376

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 147/296 (49%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 79  RMSLFVAVVDSGSFTAAAAVSGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 138

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+ 
Sbjct: 139 YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDLRIRH 198

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPL-S 182
           +  +   D+  +  D AIRL     S   ++LI R  +       A+P +L   R P+ S
Sbjct: 199 MSSSHHADLIAERFDVAIRLGSLADSRYRATLISRFTIL----PVASPQWL--ARYPVSS 252

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVL 237
           ++ L +   I    +  +      W  T D      R+       + V+S  S+M + + 
Sbjct: 253 LESLAQAEWI----IHERLSTPLRWTLT-DNDGQHSRLEISKAGRISVDSARSLMAFALA 307

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP+++VK   ++  LV ++ D   P   +Y  YP+    + K++AF +F+
Sbjct: 308 GSGVALLPEWLVKTALEDGALVHVLPDYHFPRQGIYAVYPDTRHVSTKVRAFIDFL 363


>gi|229507959|ref|ZP_04397464.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229511805|ref|ZP_04401284.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229518942|ref|ZP_04408385.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229523966|ref|ZP_04413371.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229529028|ref|ZP_04418418.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229607504|ref|YP_002878152.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|255745299|ref|ZP_05419248.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262156023|ref|ZP_06029143.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1]
 gi|262167903|ref|ZP_06035603.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
 gi|262192172|ref|ZP_06050332.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93]
 gi|229332802|gb|EEN98288.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229337547|gb|EEO02564.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229343631|gb|EEO08606.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229351770|gb|EEO16711.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229355464|gb|EEO20385.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229370159|gb|ACQ60582.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|255737129|gb|EET92525.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262023630|gb|EEY42331.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
 gi|262030201|gb|EEY48845.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1]
 gi|262031961|gb|EEY50539.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93]
 gi|327484487|gb|AEA78894.1| Transcriptional regulator [Vibrio cholerae LMA3894-4]
          Length = 296

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  + ++L  R  R ++LT +G
Sbjct: 4   ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTLNVRLLNRTTRKISLTTEG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP + 
Sbjct: 64  DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYPKVN 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N     +I
Sbjct: 124 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPINTI 182

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L++H+ +    L +P           V   +     S    NS L +M     G G+ 
Sbjct: 183 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 240

Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  +++   P+  LVR+  D    S T+   YP       +++ F +++
Sbjct: 241 SIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYL 290


>gi|157374744|ref|YP_001473344.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157317118|gb|ABV36216.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 295

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 6/245 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  V  +GS + A+    +  SSISRQ+  LE E+GI L  R  R + LTE G   
Sbjct: 6   RLHYFNCVVETGSISEASRVFDVQPSSISRQLIALEKELGISLINRTTRNIGLTEAGLTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++ +  +  +L+     + +    P G L+++ T+  G++ +   +  F+ L+PDI+I+L
Sbjct: 66  YQYSQRIVSELDEAHRAVNDLQQNPKGSLKVSMTVGFGESCVLPLVPVFISLFPDIKIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  + ID+  D  D AIR  + +  S+LI RKL   +    ++P YL     P + Q L
Sbjct: 126 ELTERVIDLVEDNVDIAIRSGR-LPDSNLIARKLADNNFLLCSSPQYLAQHGSPETPQAL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
              + I +G    +     +W    ++P        + VNS     Q  +  +G+AL+P 
Sbjct: 185 TDFDCIRYGYAGWR-----DWYLMDEKPKKLSIRDGITVNSVNGQKQLLLSHAGLALMPL 239

Query: 247 YIVKD 251
           + V+D
Sbjct: 240 WAVRD 244


>gi|85703918|ref|ZP_01035021.1| Putative LysR-family transcriptional regulator [Roseovarius sp.
           217]
 gi|85671238|gb|EAQ26096.1| Putative LysR-family transcriptional regulator [Roseovarius sp.
           217]
          Length = 295

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 22/297 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR F  VA +G  + AA +L +S+S +SR++  LE E+G++L  R  RG  LTE 
Sbjct: 1   MDIEDLRTFVDVADAGGISAAARRLGVSKSIVSRRLFKLEGELGVQLLLRTTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118
           G       + +       ++EL   ++ P+    G+LR+A  +  G       L E    
Sbjct: 61  GITFREHAARI-----GAELELARETILPTGELRGRLRVAMPLTFGPTHFAPVLAELSKR 115

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            P +Q+     ++ +DI  +  DCAIR+   ++ S+LI +++  I     A+P Y+    
Sbjct: 116 NPKLQVHATYSDRFVDIIAEGFDCAIRVGY-LEDSNLIAKRIGPITGKLVASPDYIAEHG 174

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P ++ +L  H  +  G           W L    R I        + ++ +++M  CV 
Sbjct: 175 VPETLDDLATHRALMQG--------TETWHLTDGGRTITFQPQGIFKADNGIALMTACVA 226

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G GI  LPD I      +  LV +M +   P    Y   P       KL+   + + 
Sbjct: 227 GLGIGYLPDCITHQHVASGRLVEVMPNHQPPPAAAYVIRPPGQHPARKLRVLTDMLI 283


>gi|322834321|ref|YP_004214348.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169522|gb|ADW75221.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 298

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 132/269 (49%), Gaps = 9/269 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           E++ +S S++ + ++ LE ++ ++LF R  R ++LT++G         +  +LE  + EL
Sbjct: 24  ERMGISASAVGKSVARLEEKLSVRLFNRSTRRISLTDEGQLFFERCQHIVSQLEEAEQEL 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
              S  P GKLRI T   +G  +L  +L EF   YPD+++ L   ++ +D+  +  D AI
Sbjct: 84  VRISAVPRGKLRI-TAPAIGYRILLPHLPEFRQRYPDVELDLDFSDRMVDVIDEGFDIAI 142

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R  + + SS ++ R+L         APHY      PL+  +L +H  + +    P   + 
Sbjct: 143 RSGE-LNSSQMMSRRLGPFRFAIVGAPHYFARHPAPLTPDDLYQHACLRY--RFPGNGQW 199

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMED 261
             W  T   P   P    L  N+  SI+Q  + G G+A +P++IV+   ++  L+ ++  
Sbjct: 200 QEWEMTSVTPPELP--LALSSNNLESILQATIQGLGLAYVPEFIVRPHLESGELISVLPA 257

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +         +P +     K++ F +F+
Sbjct: 258 YLKEGGKFSVVWPSSRHMLPKVRVFIDFL 286


>gi|262044679|ref|ZP_06017731.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037943|gb|EEW39162.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 305

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 135/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT +G+  
Sbjct: 6   SLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++  + EL  S  +P+GKLRI+  + +G  LL   L  F  LYP +++ L
Sbjct: 66  LTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFSRLYPQVELDL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +++  +  D AIR    +  S LI RKL        A+P YL     P S  EL
Sbjct: 125 DFSDRLVNLIDEGVDVAIR-SGELADSRLIARKLGGFRFVLCASPTYLAEYGVPGSPAEL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALLP 245
             H  I F    P       W     R  G+ R  + + VN+  + ++    G GIA +P
Sbjct: 184 AAHKCIFF--RFPATGLIQPWELRGMRLTGDFRSAAVMTVNNIEAAIRLSAAGMGIAYVP 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D++V+   D   L  ++             +P +   + +++ F +FI
Sbjct: 242 DFVVREAMDEGQLQEVLPGCCVKDGHFSVLWPASRYLSPRIRCFIDFI 289


>gi|194364208|ref|YP_002026818.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347012|gb|ACF50135.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 293

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 25/293 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  V     F+ AA+ L LS + ++R ++ LE  +  +L +R  R ++ T  G+ 
Sbjct: 5   EAMRVFVAVVERNGFSAAAQALDLSTAGVTRHVAALEKRLATRLLHRTTRRVSPTSAGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  + +  +  +   +++PSG LRI   +  G   L   L  +   +P +++ 
Sbjct: 65  YYAQCVRLLAEFDALEASIGAQALEPSGTLRINAPVSWGIARLGPLLASYRERFPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L ++ +D+  +  D AIR+ R+P  S +LI R+L    +   AAP YL     P + Q
Sbjct: 125 LALSDRLVDMVEEGYDVAIRITREP--SPTLIARRLGESRVSLCAAPSYLAARGAPKTPQ 182

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236
           EL  H  +++     GD  P           +  P GE ++   S L  N+   + +  +
Sbjct: 183 ELQAHACLSYSYWSAGDHWP-----------LQGPGGEVKVAVSSLLHANNGDVLREAAI 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G G+ L PD++++D   +  LVRI+ +       ++  Y        K+++F
Sbjct: 232 AGMGVILQPDFLLEDALADGRLVRILPEWEASPIGIFAVYTSRSHLAPKVRSF 284


>gi|293611508|ref|ZP_06693797.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826158|gb|EFF84534.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122482|gb|ADY82005.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 299

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 145/295 (49%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYSLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QL++ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL    +
Sbjct: 121 EIRLQLMVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGD 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLG 238
             + ++L +H +++  +   + ++    L   D    + ++S + + + + ++ Q     
Sbjct: 181 IKNPEQLSEHRILSLSE---EHLDQQFLLHGPDNQQKKIKVSPIVMGTNIHMLAQLASQN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLP+   +D   +  LV+I+ +   P   ++  YP      G L A R FI
Sbjct: 238 CGIALLPESAAEDFLKSGQLVQILPEWKAPHGILHAVYP---SRRGLLPAVRVFI 289


>gi|157371376|ref|YP_001479365.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323140|gb|ABV42237.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 323

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 139/288 (48%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V  S SFT   +QL +S S++S+ I+ LE  +  +LF+R  R +TLT +G+   
Sbjct: 7   LDVFVRVGESRSFTTTGQQLGISASAVSKAIARLEERLATRLFHRSTRNVTLTPEGALFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +  ++E  + EL +S+  P GKLR++  ++ L   L      EF   YPDI++ +
Sbjct: 67  ERCRRILGEVEAAENELAQSNQMPRGKLRVSLPSVGL---LFMPQFAEFKRQYPDIELDI 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  D  IR  +P   S L+ RKL +       AP Y + C  P + +EL
Sbjct: 124 DCSDRLVDVIEEGFDAVIRTGEP-SDSRLMARKLGSYRRIMVGAPRYFEQCGVPNTPEEL 182

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  + +    P   +   W L+   + +     S +  N+   ++ +   G GIA +P
Sbjct: 183 MQHRCLRY--RFPSSGKVDQWPLSRGGQILTFDLASSMTANTLEPLVCFAESGLGIACMP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D  ++      +LV +++        +   +P +   + KL+ F +++
Sbjct: 241 DIAIRQQLEVGSLVSVLDGFNQDHTILRVLWPSSRHLSPKLRVFVDYV 288


>gi|289679703|ref|ZP_06500593.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
          Length = 302

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 136/296 (45%), Gaps = 13/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A   SF+ AAE+L +  S++SR I  LE ++GI LF R  R L LTE G    
Sbjct: 7   LTAFVESANGNSFSKAAERLGIKASTVSRYIKDLEQDLGIALFNRSTRKLALTEGGQTFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V  +L   +      +  P G+L+++      ++ +   + EF+  YPDI + L 
Sbjct: 67  YHAQKVLFELSEAKAATSALNQNPRGRLKVSLPPAFARHHILPLVGEFIKRYPDITLDLC 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+   +D+     D AIR+ + + +S+L  RKL  +      +P +     +P    +L 
Sbjct: 127 LEESQVDLIATGIDLAIRIGR-LANSNLKARKLAEVKTFLCVSPEFAARYSQPDCPDQL- 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             +++  G   P+ +   N    V  P+G    + L +N   + +     G G+ALLPD+
Sbjct: 185 PVDMMIIGRQCPEALIWANDNEQVSLPVG----AVLWINDLDAQLIAVSSGLGMALLPDW 240

Query: 248 IVKD---NPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +      +  LVR + D        S  V+F YP     + K++ F +FI  +  D
Sbjct: 241 LASASLRDGRLVRWLPDWEIKTSQESGAVWFVYPPKRIVSSKVRCFIDFIAERVVD 296


>gi|300696736|ref|YP_003747397.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299073460|emb|CBJ52976.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           CFBP2957]
          Length = 293

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 120/251 (47%), Gaps = 14/251 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +A   +F  AA  L +S S++S  +  LE  +G++L  R  R ++LTE G +L 
Sbjct: 1   MTAFIAIAEQRTFRAAAGVLGVSPSALSHAMRNLEARLGVRLLNRTTRSVSLTEAGEQLL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R        LE    E+     +PSG +RI+ +    + +++  L +FL  YPDI ++ +
Sbjct: 61  RRVRPAVADLEDAVNEVASERNRPSGSIRISASESAARPIVRHVLPDFLAAYPDIHVECV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D + +DI  D  D  IRL + +    +  R    +   A A+P YL N   P + Q+L 
Sbjct: 121 VDTRLVDIVADGFDAGIRLLEDVPRDMIAVRFGPDMRFAAVASPAYLSNHAPPQAPQDLA 180

Query: 188 KHNLITF----GDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +H  I F    G L    +E     A   VD P        L + +    ++  + G GI
Sbjct: 181 QHRCIRFRFESGALYRWDLEHRGKAAHINVDGP--------LTLGNLNLAVEAALAGIGI 232

Query: 242 ALLPDYIVKDN 252
           A +P+++V ++
Sbjct: 233 AWVPEHLVAEH 243


>gi|157373592|ref|YP_001472192.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157315966|gb|ABV35064.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 309

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 134/299 (44%), Gaps = 21/299 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L L+++++SR+I+ LE + G++L +R  R L LTE 
Sbjct: 1   MDLNRVQMFAQVVEQGSFTGAAKALGLTKATVSRKIAELEADAGVQLLFRTTRSLKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +     +   L+  +  L  S     GKL+I   I++GQ         FL  YPDI
Sbjct: 61  GSAYYNRVHHILIDLKNAEDLLSASQQLIKGKLKIVCPIEMGQLFFGRIFARFLKQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSS---LIQRKLVTIHMHAYAAPHYLKNCRE 179
            I+  L N+ +D+  +  D   +    I SSS   L    L+       A+P YL     
Sbjct: 121 SIEAELSNRKVDVIEEGVDVLFQ----ITSSSDTRLQTYSLLNTSKTLMASPEYLAQYGT 176

Query: 180 PLSIQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           P + Q+L+KH  +       D      +   W+        EP  + L VN+     +  
Sbjct: 177 PQTPQDLNKHRAVKLESAHIDGSWTLFDGKEWITV------EPE-AQLTVNNVTLAREAA 229

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + G GI  +P  I +   D   L+ ++ED       +    P+      K + F  FI+
Sbjct: 230 IEGLGITSVPSLIAQQAIDKHLLIPLLEDFPMAQTKITMSLPQRAYLPRKYRVFIEFIY 288


>gi|317492111|ref|ZP_07950541.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919816|gb|EFV41145.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 300

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 126/251 (50%), Gaps = 13/251 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++ VF VV   GSF+ A  +L +S S++S+ +  LE E+ + L +R  R LTLT+ G+ 
Sbjct: 5   NRMAVFAVVVAEGSFSAAGRRLGMSPSAVSQHMRTLEQELRVTLLHRSTRKLTLTDAGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     + H+    +  L E      G+LRIATTI LG   L   L   L  +P + ++
Sbjct: 65  FYPGCKAMLHEASQAEQRLAEMRDTLVGELRIATTIGLGGAPLAQALAPLLQAHPKLSLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ +++ I++    AD A+R+ + +  +S I   L    M   A+P YL  C  P +  E
Sbjct: 125 ILANDEIINLIEVRADIALRVNRQLDDASYIAHPLAVWPMVLCASPRYLNRCGIPETPDE 184

Query: 186 LDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQ----YCVLGS 239
           L +H  L+   + +P  +E       + R  GE R IS   + +  S M     + + G 
Sbjct: 185 LSQHQWLVNTNEAVPASIE-------LHRNNGETRKISLPDIATGSSSMNVLRAFTLEGI 237

Query: 240 GIALLPDYIVK 250
           GI++ P Y ++
Sbjct: 238 GISIQPLYEIE 248


>gi|206576553|ref|YP_002239098.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206565611|gb|ACI07387.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 301

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L+ F  V  +GSFT AA+ L +  +++S+ I  LE  +G+ L  R  R +T+T +G 
Sbjct: 4   FSALKAFTRVVEAGSFTRAADSLDMPNATLSKTIKQLEAHLGVSLLQRTTRRITVTPEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +   LE        +  KP G LRIA       ++L   L +F+  +PDI+I
Sbjct: 64  EYYEKARCLLEDLEEIDASFNTAHNKPKGHLRIAIGGSTACDVLIPLLADFMTAWPDIRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +K  D+     DCAIR   P+  S+LI RK+    +   A P YL+ C  P S  
Sbjct: 124 DLQVADKPADLISGNIDCAIR-GGPMDDSTLIARKIGEATLVTCATPGYLQRCGTPASPD 182

Query: 185 EL-DKHNLITF 194
           EL   H LI++
Sbjct: 183 ELHHGHQLISY 193


>gi|260775796|ref|ZP_05884692.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608212|gb|EEX34381.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 317

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 130/295 (44%), Gaps = 23/295 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F      GSF  AA++     S++S+ +  LE+E+GI+LF R  R L LT  G +  
Sbjct: 7   LRFFVATLERGSFAAAAKKYGTDPSTVSKALHRLESELGIQLFQRSTRQLNLTSAGHQYA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    V  +L   +  LQ+S+  PSG L++   +  G+  +Q  L  F  LYP+I +++ 
Sbjct: 67  RTARLVLDELSACEEALQQSNRLPSGTLKVNLPVSYGRRYIQPLLANFRQLYPNIALEIQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+  +D+     D +IR    +Q S LI R+L  I     A+  YL     P    E  
Sbjct: 127 FDDAYLDMIEHGIDVSIR-SGSVQDSQLIARQLSPIDYLICASHDYLNQHGAPRGPHEFH 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H+ I F     +  +    L     P  E ++      + VN   S+ + C  G G+  
Sbjct: 186 HHSWIRF-----RFKQTGRLLGLKLAPSDEAKLPDIAQNMVVNDGESMAELCAQGLGLTQ 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT--------VYFCYPEALKNTGKLKAFRNFI 290
           +P +I +D      I    ITP F         VY  Y        ++K F +F+
Sbjct: 241 IPHFIARD-----WIKAGEITPLFPSFRPRDEGVYILYHRREHVPLRVKLFVDFV 290


>gi|239820269|ref|YP_002947454.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805122|gb|ACS22188.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 308

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 140/296 (47%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+ F  V  +GSFT AA+ LH+S++++++ +  LE  + ++LF R  R + +T +G+
Sbjct: 4   FDALQAFARVVEAGSFTKAAQTLHMSKTTVTQLVQQLEARLRVRLFNRTTRQVRVTAEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE     L  +S  P G+LR+       + +L   L  F   +P+IQ+
Sbjct: 64  AYYDRVVRLLADLEDADASLLGASASPRGRLRVDVPTPFARMILVPALPAFHARHPEIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L + ++ +D+  D  DC +R  + +  SSL  R++  + +  +AAP YL+    P    
Sbjct: 124 ELGVSDRMVDLIGDNVDCVLRGGE-LTDSSLTARRVGELRLGVFAAPCYLERAGTPAHPN 182

Query: 185 ELDK--HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+   H ++ +     G +    M+       +    G   ++    N+YL+     V 
Sbjct: 183 ELEGTHHRIVGYLSTRSGKVAALRMQRGAEHIELQ---GRHVVAVDDGNAYLAA---GVA 236

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  LP Y+   +     LV + E     +  +Y  +P     + KL+ F  +I
Sbjct: 237 GMGVLWLPHYMAAPHVAQGELVPLFEGWHFGAMPMYVMFPPNRHASAKLRVFIEWI 292


>gi|218663778|ref|ZP_03519708.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 293

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 13/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P +
Sbjct: 61  GGVFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P Q   L+  KL    +  YA+  YL     P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERPEQ-GRLVFSKLTDYTLGLYASRDYLAAHGGPGD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239
           ++ L  H  I +       +ED  + A+++   GE   S     ++++ +   +    G+
Sbjct: 180 VEALKAHPRIGY-------VEDLLFTASLNFS-GEVMRSWDAGFEISTAIGQTEAVRSGA 231

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +L DYI +  P L RI+ + I+     +  Y E  ++  ++++  +F+
Sbjct: 232 GIGILHDYIARQYPELQRILPE-ISIRRAYWTTYHETARDLVRVRSVVDFL 281


>gi|167893084|ref|ZP_02480486.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
          Length = 274

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 122/246 (49%), Gaps = 10/246 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++    LG  +L   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LGAPVLP-VLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W    A  D  +  PR   +  N+  + + + + G G+A +PD
Sbjct: 186 TCLLY--RFPTTGKLERWPLRPAPGDADVEPPR--SMICNNVETRVCFALRGRGLACVPD 241

Query: 247 YIVKDN 252
           + V+D 
Sbjct: 242 FAVRDE 247


>gi|312831472|emb|CBY17654.1| LysR family transcriptional regulator [Sinorhizobium meliloti]
          Length = 296

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 137/278 (49%), Gaps = 15/278 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVA+  SFT AA +L +S S++S+ I  LE  +G++L  R  R +  TE G
Sbjct: 3   NFNDLAAFAVVAKERSFTRAAAKLRVSPSALSQTIRNLEERLGLRLLTRTTRSVASTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +  + ++E     L E   KP+G +RI        +LLQ  LK FL  YPDIQ
Sbjct: 63  ERLLRTIAPRFDEIEAELAALSELRDKPAGTVRITAGEHPAISLLQPALKRFLPDYPDIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+D    DI  +  D  +R+ + +    +  R    + M   A+P Y +    P + 
Sbjct: 123 VEIIIDYGLTDIVAEGYDAGVRMGEQVAKDMIAVRIGPDMRMALVASPGYFERHPLPKTP 182

Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           Q+L  HN I     T+G + P  +E       V R  G+     L  NS    +   + G
Sbjct: 183 QDLTDHNCINIRLPTYGGVFPWGLEKDERDVKV-RGDGQ-----LVFNSLAMRLASALDG 236

Query: 239 SGIALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCY 273
            G+A +P D+++    +  LVR++E+   P F  Y  Y
Sbjct: 237 LGVAYMPEDHVLPYLGDGRLVRVLEE-WCPYFPGYHLY 273


>gi|237801279|ref|ZP_04589740.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024138|gb|EGI04195.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 303

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 133/297 (44%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L  R  R LTLT
Sbjct: 1   MVPDLNDIALFVQVVRSGSFAQAARHLGMPSNTVSRRVQELEVQLGTRLLQRSTRKLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +   ++    L      L     +PSG++RIA T D         + +FL  YP
Sbjct: 61  QAGEDFYGRCTDAVDGLMDAAEHLVSGREEPSGRVRIAATADFFDFFSMDWVADFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+  S  + R+L+        A+P Y+     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLLDSGYVGRQLIDEARDGMVASPAYIATHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+Q L  H  ++   + P     +  L    R       S    N+  ++ +  + G 
Sbjct: 180 PDSLQSLQHHYCVSA--VHPGGASGWRLLGPDARMHDVQIASRFTANTAQALRKAALAGL 237

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIALLP  +++ +     LV I+      S  ++  YP   +    + AF   +  K
Sbjct: 238 GIALLPAPLIRSDLRDGLLVPILAQYQRTSHGLHVLYPSRQQLPLAVSAFIEMVMEK 294


>gi|254185358|ref|ZP_04891946.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184209593|gb|EDU06636.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 303

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 12/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F VVA +G F+ AA QL  + SS++R +  LE  +G+ L  R  R +TLT+ G+   
Sbjct: 7   LQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L      + ++  +P G LR++  +   + +L  +L  FL  YP + + L 
Sbjct: 67  EQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D++ D  D A+R+ +P +   L+ R L        A+  YL     P +  +L 
Sbjct: 127 VSDAYLDLATDRIDVAVRIGEPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPAAPGDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246
            H  + F    P      +W  + D    +  +      + L I++  VL G G+AL+P 
Sbjct: 187 AHRCLRF----PYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALVPM 242

Query: 247 YIVKDN---PNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V D+     L+ + E   +TP      VY  Y    +++ K++ F  F+
Sbjct: 243 WLVHDDIVAGRLLPLFESWCVTPPGGDARVYAAYLPNRRHSRKVQTFIAFL 293


>gi|319781816|ref|YP_004141292.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167704|gb|ADV11242.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 294

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 7/247 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F   A  G+F  A   L +S S++ + ++ LE E+G++L  R  R + LTE+G  
Sbjct: 5   NGLLAFARTAEFGNFVAAGRALGISASAVGKSVARLEQELGVRLLQRSTRRIGLTEEGKL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   ++  +  L  +   P G+LRI+T I +  +LL   L EF+  YP+I++ 
Sbjct: 65  FNERVRRILDDIDDAEAMLSRTRETPRGRLRISTPI-VTYHLLLPVLSEFMARYPEIELD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +++ +D+  +  D AIR    +  S L+ R +    M   AAP YL+    P    +
Sbjct: 124 IDFNDRIVDVIDEGIDVAIR-SGELPDSRLVSRPVAPFRMLLCAAPSYLERHGTPGEPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  I F  L    + ++ ++        EP+I S L  N+  ++    + G GIA +
Sbjct: 183 LIRHFGINFRFLNSGRLLEWPFITGS----AEPQIRSMLTCNNMEALKGATIAGLGIACM 238

Query: 245 PDYIVKD 251
           PD++V++
Sbjct: 239 PDFLVRE 245


>gi|209543061|ref|YP_002275290.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530738|gb|ACI50675.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 288

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 135/291 (46%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V    SFT AA  L L +S+++  +  LE  +G++L  R  R ++ T  G+  H
Sbjct: 1   MRVFTRVVERRSFTLAASDLGLPRSTVTDAVKRLEARLGVRLLQRTTRHVSPTLDGAAYH 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   LE  +        +P G LR+     L ++ +   L +F+  YPDI++ L 
Sbjct: 61  RRCLALIADLEDAEAAF--GGARPRGMLRVDVHGTLARHFVLPRLPDFMAAYPDIELTLS 118

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   +Q S ++ R++  +     AAP YL     P  +  LD
Sbjct: 119 EGDRLVDLIREGIDCVLRVGD-LQDSDMVARRVAMLEEVTCAAPSYLARFGMPGDVDALD 177

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H ++ F     G L+P      + L T+        +S + VN   S++    LG G+ 
Sbjct: 178 GHRMVGFRSSATGTLLPLEFMVGDSLRTIT------LLSPVAVNGAESLVAAARLGLGLV 231

Query: 243 LLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P Y +V+D     LV ++ D       V   YP   +   +++ F ++I
Sbjct: 232 QVPRYHVVQDLGQGTLVVVLPDHPPSRTPVSLLYPRHRQVAPRVRVFIDWI 282


>gi|90409283|ref|ZP_01217383.1| hypothetical transcriptional regulator [Psychromonas sp. CNPT3]
 gi|90309618|gb|EAS37803.1| hypothetical transcriptional regulator [Psychromonas sp. CNPT3]
          Length = 300

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF     SGSFT A   L++  SSI+R I  LE E+G+ LF R  R L +TE G +
Sbjct: 3   DLIRVFIQTVDSGSFTKAGAVLNMVPSSIARNIDNLEKELGVTLFKRSTRQLLITEDGQQ 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +++    +     + + + +P G L+I+     G+  +   L EFL  YP +Q++
Sbjct: 63  FLGGATKLLQDADNLVASMSKINREPEGILKISVFESFGRQCISPILPEFLQRYPKVQVE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ ID++ +  D  IR+ +P   S L  R L+T H    A+  YL+    P + ++
Sbjct: 123 IELDNQMIDLNSENVDIGIRIGRP-ADSCLHARMLLTNHTLLCASADYLEKYGTPKTPKD 181

Query: 186 LDKHNLITFGD 196
           L  HN +   +
Sbjct: 182 LIHHNCLLLAN 192


>gi|77460858|ref|YP_350365.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384861|gb|ABA76374.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 301

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 132/291 (45%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + V+  V  SGS T AA Q  +S + +   +  LE  +G++L  R  R   LTE GS
Sbjct: 4   FQSMSVYVKVVESGSMTAAALQCEMSTTMVGNHLRALEQRLGVQLLQRTTRRQRLTEFGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   EV   +  ++   +++  +P G LR+   +  G   L   L EF L  P +++
Sbjct: 64  VYYQRCLEVLGLVADSERLAEQTLDEPRGILRVTAPLTFGVERLAPALSEFSLQCPQVKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +IL N+  D+     D A RL      S+LI R L+   +   A+P Y+     PL+ +
Sbjct: 124 DVILTNRRPDLLESGLDVAFRLGH-FDQSNLIARPLIDYTLTVCASPEYVARRGMPLTPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241
           EL +H+ ++F        +       +  P GE  +     + +NS   + Q    G GI
Sbjct: 183 ELRQHDCLSFAYPAGDDWQSVEKQWRLSGPDGEIMVDVKGPMLINSSAGLHQAARTGMGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +LPD +V+    +  LV +M D   P+  ++  Y        KL+ F  F
Sbjct: 243 VMLPDALVEQDLRDGRLVVVMPDYQPPNRPMHLLYAPDRYRLPKLRRFVEF 293


>gi|84386214|ref|ZP_00989243.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84378984|gb|EAP95838.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 297

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 138/291 (47%), Gaps = 11/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V +  SF  AA +L +S+S++++++  LE+ +G++L +R  R ++LTE G +
Sbjct: 5   DAIPYFLAVVKQSSFAGAARELGVSRSAVNKRVIQLESSLGVRLLHRTTRQVSLTESGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   ++  + L+  +        +  G LR++  +  G+ +L   + +FL  YP I I 
Sbjct: 65  FYDHLTKANYWLQKAEDAATSQQNQAIGTLRVSAPMSFGRLVLAPLIPQFLKRYPHIHID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL--KNCREPLSI 183
           + +D+  +DI     D AIR    +  SSL+ ++L ++     A+P Y        P  I
Sbjct: 125 MTMDDGYVDIVEGGYDVAIRAGD-LNDSSLVAKRLTSVRSVICASPTYFDENGLSIPTEI 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  HN +    L     E   W     D+          +VN+  +++   + G GIA
Sbjct: 184 CELSAHNAL----LYRHTSESAEWFFGHQDQVTSVVVKGNYRVNNSEALLCATMAGLGIA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPD+I      +  L+ ++   + P   VY  +PE      KL+ F +F+
Sbjct: 240 RLPDFIANAPIQSGELLPLLPSYLMPEKNVYALFPERDPMPLKLRLFIDFL 290


>gi|182680170|ref|YP_001834316.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636053|gb|ACB96827.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 302

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 127/272 (46%), Gaps = 12/272 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VA  GSF+  A +  +SQ++I R+I  LE    I LF+R  R + LT+ G  
Sbjct: 5   EDLHCFVRVAECGSFSIVARENMVSQATIGRRIGTLEDHFKILLFHRSTRKIVLTDAGQS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  + E  +  L   S +P G++R+A+T   GQ L++G L +F   YP + I 
Sbjct: 65  FLVYARRILQEFEAAENALGRHSAEPKGRVRVASTNAFGQYLIRG-LAQFNERYPGLHID 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L +  I++  D  D A+++ + +  SS++ R L  +     A+P YL     P     
Sbjct: 124 LVLGDGFINLIEDGFDLALKIGE-VTESSVVARHLGDVPRSLVASPAYLAKHGAPEDASA 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + F        + +N   ++ R  G       + NS ++  +    G GI+L P
Sbjct: 183 LQHHECVLFS--YGATRQVWNVGGSLVRVSG-----SFRTNSSIAQFEAVRNGMGISLFP 235

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            + V ++     L+R++ D+       Y  YP
Sbjct: 236 WFQVDEDVRSGRLIRLLPDMPIEPIHFYMTYP 267


>gi|167585238|ref|ZP_02377626.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 320

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 147/296 (49%), Gaps = 16/296 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   + ++   YPD+ +++
Sbjct: 66  YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMRAVTDYADRYPDVTVEI 125

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+  YL+    P +I +
Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHIMLVASSDYLEKRGTPQTIAD 185

Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241
           L  HN +   T   ++   + D    + V+       ++   + ++L  ++  VL G+GI
Sbjct: 186 LAHHNYLRRDTNATMLDAMVTDAAAASRVN-------LNGNLIVNHLEGLRAAVLGGAGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ALL   +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 239 ALLGTEVVGDDLEAGRLVPVLLDAVPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|15641949|ref|NP_231581.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121727819|ref|ZP_01680886.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147675040|ref|YP_001217477.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153818743|ref|ZP_01971410.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153822513|ref|ZP_01975180.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227082077|ref|YP_002810628.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|254226491|ref|ZP_04920076.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|254286879|ref|ZP_04961831.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|254849033|ref|ZP_05238383.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297579459|ref|ZP_06941387.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298498018|ref|ZP_07007825.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9656485|gb|AAF95095.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121629855|gb|EAX62269.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|125620997|gb|EAZ49346.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|126510706|gb|EAZ73300.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126519987|gb|EAZ77210.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146316923|gb|ABQ21462.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|150423029|gb|EDN14978.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|227009965|gb|ACP06177.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227013845|gb|ACP10055.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|254844738|gb|EET23152.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297537053|gb|EFH75886.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297542351|gb|EFH78401.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 309

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 132/274 (48%), Gaps = 6/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  + ++L  R  R ++LT +G
Sbjct: 17  ELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTLNVRLLNRTTRKISLTTEG 76

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP + 
Sbjct: 77  DTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYPKVN 136

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N     +I
Sbjct: 137 FDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPINTI 195

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L++H+ +    L +P           V   +     S    NS L +M     G G+ 
Sbjct: 196 QDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFH--SKHSSNSPLGVMTMVQNGLGVG 253

Query: 243 LLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYP 274
            +  +++   P+  LVR+  D    S T+   YP
Sbjct: 254 SIASFLIDKLPDASLVRLFPDFYQISTTMNILYP 287


>gi|50123139|ref|YP_052306.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613665|emb|CAG77116.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 295

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 135/288 (46%), Gaps = 17/288 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F   +  GSF  AAE L +S   +++Q++ LE  +G++L  R  R  +LT+ G + +
Sbjct: 7   MKIFVKASELGSFVAAAEVLGISPQMVAKQVAWLEARLGVRLLNRTTRRQSLTDIGLRYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  + E      +E  V PSG +++   +  G +LL   +  +L  YPD QI L 
Sbjct: 67  ERCKVVLAEAEDADAIAREMQVTPSGVIQVNAPVTWGSHLLAPFITRYLARYPDTQIALT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D   +  +  IR+ + +  SS++   L    + A A+P YL     P +   L 
Sbjct: 127 LNDRIVDPIEEGFEVIIRIGE-LADSSMVAWPLQPYSLIACASPDYLAREGSPDTPSSLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +H  + +G           W+   D      RP G      L  N + +++   + G GI
Sbjct: 186 RHACLIYGAR--AVATSCRWVFQKDGKPEEVRPEGR-----LFANDWNALLHAAIAGYGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            L P+ +++   D   LV+++ D   P+  V+   P   ++  K+K F
Sbjct: 239 TLGPEAVLRKEIDRGRLVQVLSDYNGPARPVHVMVPMGRRSAVKIKTF 286


>gi|107023899|ref|YP_622226.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690985|ref|YP_836608.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170734320|ref|YP_001766267.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105894088|gb|ABF77253.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649074|gb|ABK09715.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169817562|gb|ACA92145.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 320

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 20/298 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + +
Sbjct: 66  YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDM 125

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +
Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
           L  HN +           D N     + V       R+S    L VN    +    + G+
Sbjct: 186 LANHNYLR---------RDSNSTMLDSLVIDAAAASRVSLNGNLIVNHLEGLRAAVLAGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIALL   +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 237 GIALLGTEVVGDDIESGRLVPLLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|53721476|ref|YP_110461.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76818600|ref|YP_337135.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|134282916|ref|ZP_01769618.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167722513|ref|ZP_02405749.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167741494|ref|ZP_02414268.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167818685|ref|ZP_02450365.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167827060|ref|ZP_02458531.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167897132|ref|ZP_02484534.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167905508|ref|ZP_02492713.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|217424451|ref|ZP_03455949.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226196533|ref|ZP_03792114.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237510523|ref|ZP_04523238.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|254187238|ref|ZP_04893752.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198896|ref|ZP_04905314.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254264418|ref|ZP_04955283.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254296760|ref|ZP_04964214.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52211890|emb|CAH37894.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|76583073|gb|ABA52547.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|134245564|gb|EBA45656.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|157806589|gb|EDO83759.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157934920|gb|EDO90590.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169657068|gb|EDS88462.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|217392375|gb|EEC32399.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225931409|gb|EEH27415.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002728|gb|EEP52152.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|254215420|gb|EET04805.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 303

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 12/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F VVA +G F+ AA QL  + SS++R +  LE  +G+ L  R  R +TLT+ G+   
Sbjct: 7   LQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L      + ++  +P G LR++  +   + +L  +L  FL  YP + + L 
Sbjct: 67  EQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D++ D  D A+R+ +P +   L+ R L        A+  YL     P +  +L 
Sbjct: 127 VSDAYLDLATDRIDVAVRIGEPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPAAPGDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246
            H  + F    P      +W  + D    +  +      + L I++  VL G G+AL+P 
Sbjct: 187 AHRCLRF----PYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALVPM 242

Query: 247 YIVKDN---PNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V D+     L+ + E   +TP      VY  Y    +++ K++ F  F+
Sbjct: 243 WLVHDDIVAGRLLPLFESWCVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFL 293


>gi|222081129|ref|YP_002540492.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725808|gb|ACM28897.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 304

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 142/297 (47%), Gaps = 25/297 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LRVF  VA   SFT AA++L LS +  S+ +  LE+ +G +L  R +R +++TE G   
Sbjct: 6   SLRVFCTVAELKSFTAAADRLGLSPAMASKHVMHLESRLGTRLLNRTSRHVSITETGMLY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   L+  +  +   +V P G L+ +  + +   L+   + E+   YPD++  +
Sbjct: 66  FNQARQMLDGLDEVEAAVSNVTVMPRGILKFSAPVWIANTLIARTIAEYHQRYPDVRFDM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L  + +++  +  D A+R   P +   SLI R L+ +  H   AP YL     P+++ +
Sbjct: 126 DLSGRIVNLVDEGFDLALRATTPERLDPSLIARPLMEVGFHLVGAPAYLSRTGRPVALTD 185

Query: 186 LDKHNLITF------GDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           L+ H+L+ +      G L    P+  E  N+     RP+       +Q  + + +    +
Sbjct: 186 LNGHSLLLYSGINASGSLTFKGPQGPETVNF-----RPV-------MQSENEIMLHLAAL 233

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+  LP ++ + +     L  ++ D +  S T++  YP     + K++ F +F+
Sbjct: 234 EGMGLVFLPVWMTQTDIAEGRLELVLPDAVKFSATLHAVYPSRKYLSAKVRTFIDFL 290


>gi|149927090|ref|ZP_01915348.1| transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
 gi|149824311|gb|EDM83531.1| transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
          Length = 315

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 149/298 (50%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS ++++L+    F +V  +GSF  AA+    + SSISR I+ LE  + I+L  R  R +
Sbjct: 1   MSNNFNELQAAETFLMVVNTGSFAAAAKLKGENPSSISRAIAQLEAHLNIRLLNRTTRQV 60

Query: 58  TLTEQGSKLHRVTSE--VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            +TE G +++++ ++  +  + E      Q  S +P G +RI+  + +G+ +L   L EF
Sbjct: 61  KITEAG-EIYKLYAQRMLESQQEARDAITQLQSGQPHGTVRISLPVIVGEKILAPRLSEF 119

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YPD+Q+Q+ L N++  I  +  D A+R+   +Q S+L  RK+ TI    YAAP YL+
Sbjct: 120 HAKYPDVQLQVDLSNRNAMIVEEGFDIALRV-GLLQDSTLRARKVATIWRKLYAAPAYLE 178

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQY 234
               P +  +L  H  I F     +   +F W     +P  + R IS L  +S + +++ 
Sbjct: 179 KHGVPQTPADLVHHQCIAFSQRGDQKEWEF-WPKNGAQPSQKHRVISWLTCSSPMMVVRA 237

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMED-----VITPSFTVYFCYPEALKNTGKLK 284
              G G+    D++++       LV I+ D       T    +Y  +P  L +   LK
Sbjct: 238 IQSGLGLGRSADWMLQGALARGELVEILSDWYCDNPATGGLPMYLVFPPGLSSQLSLK 295


>gi|66046293|ref|YP_236134.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257000|gb|AAY38096.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 298

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 136/287 (47%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA + SFT A ++L +S S I + I  LE  +G++LF+R  R + LT +GS     
Sbjct: 9   VFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEGSIFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LE  ++EL  +   P G+LRI  ++ L   L+   + +F+  YPDI++ +   
Sbjct: 69  CRRILSELEAAEMELSNARDLPKGRLRI--SLPLVSGLVMPVIIDFMRTYPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P    +L +H
Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSKRMGSFQLRVVGAPDYFARHGIPRHPGDLSQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +      P      +W   + R  G   +   Q    N+   ++     G G+A LPD
Sbjct: 186 ACLLHK--FPSTGRFEHW--PLRREAGVDDLELPQAMVCNTTEILVDVARAGLGVACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++     N  L+ +++D    + T    +P +   + +L+ F +F+
Sbjct: 242 FMILSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288


>gi|331016884|gb|EGH96940.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 301

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 140/290 (48%), Gaps = 10/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPVFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPTYLAERGTPQQPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  + +G           W      +P+       ++ N+   +    + G GI  
Sbjct: 183 DLHSHECLPYGH-----SRHVQWRFQGTGKPVSLNVSGRIRANNGELLKDAALAGLGITY 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +IV D     +LVR+++++     T+   YP+  + +  ++AF  F+
Sbjct: 238 LPTFIVGDALRAGSLVRVLDELRPEPLTLSAVYPQHRQASRPVQAFIEFL 287


>gi|253690505|ref|YP_003019695.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251757083|gb|ACT15159.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 315

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 136/301 (45%), Gaps = 12/301 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++++  F      G FT A + L    S +SR+++ LE  +G++L  R  R L LTE G
Sbjct: 13  EFEQITAFLAAVEHGGFTTAGQALGRDGSILSRRVTALEKRLGVRLMERTTRRLALTEAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H+      + L+  + +   ++    G LRIA     G+  +   L  FL  YPD+ 
Sbjct: 73  EAFHQRMRGALNVLQAIEQDTTAAAASVRGTLRIALPATFGRMWIAPILPAFLAAYPDLV 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   +++ +D+  +  D AIR+   +  S L+ R+L        A+P YL+    P   
Sbjct: 133 VETAFEDRYVDLVAESFDVAIRI-GTLTDSRLVARRLAPSRRMLCASPAYLQARGMPSRP 191

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  + F  L    +    W L   D+         L  +   S++Q  V G GIA
Sbjct: 192 ADLGQHACLGFSRLASHPL----WHLRDGDKTAAIRITGPLVTDDAQSLVQAAVSGVGIA 247

Query: 243 LLPDYIVKD---NPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARD 296
           ++ D++      +  LV ++    +  S T+Y  +P A     K +AF ++I   L A  
Sbjct: 248 MVSDWLAGPELCSGRLVPVLPAHPVENSETIYLVHPSARLVPAKTRAFGDWIASELNATP 307

Query: 297 W 297
           W
Sbjct: 308 W 308


>gi|167584508|ref|ZP_02376896.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 315

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G   
Sbjct: 6   NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD+ I+L
Sbjct: 66  LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHAQYPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A+P Y++    P   Q+L
Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVRQHGAPTRPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H  +T   L         WL  ++ P G  +I     +Q N+  S+      G GI +
Sbjct: 186 GGHQCLT---LSTPAFPTHEWL--LEGPGGVEQIHVTGPVQTNTAESLALAIRDGIGIGM 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   D   +  LVR++ D I     VY  YP            R F+  K R W
Sbjct: 241 LPVYSSIDALRDGTLVRVLPDHILQKMNVYALYPS-----------RRFVDAKVRTW 286


>gi|73537658|ref|YP_298025.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72120995|gb|AAZ63181.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 323

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 141/297 (47%), Gaps = 11/297 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V  +G F+ A  Q  +++S +SR+++ LE  +G++L +R  +   LT  G  
Sbjct: 26  DDLLLFIHVVDAGGFSAAERQTGIAKSRLSRRVATLERALGVRLLHRSGQVFGLTPVGEA 85

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     E    ++      + +  +PSG + + T++ + +  L   L EF   +P +Q+Q
Sbjct: 86  VLAHAREAATHVDKIGALTRSAVAEPSGVIHLHTSMLIAETTLPPILAEFARAHPGVQVQ 145

Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L N+ +D++ +  D  IR    P+ S  ++   + T      A P  L+    P  + 
Sbjct: 146 LTLSNRFVDLAEERLDLVIRAAVVPLASEDVVAVPVATSASIVVAHPSLLEADGPPARLD 205

Query: 185 ELDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  +  +  G L  P+    + ++   D+PI       + V++ L+I +  + G+G+A 
Sbjct: 206 ELAGYPCLAQGTLTNPR---PWQFIDADDKPIDIAVTPGIAVDNLLAIRELALRGAGMAQ 262

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y+ +D  +   LV +++ V +   T+Y  YP      G   A R F+ L    W
Sbjct: 263 LPSYLCQDAIDAGMLVPVLQGVRSRPATLYAMYP---SRRGMTSAVRVFLDLVRTRW 316


>gi|294341522|emb|CAZ89939.1| putative Bacterial regulatory protein, LysR [Thiomonas sp. 3As]
          Length = 301

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 133/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  GS T AA    ++ + I R+I  LE  +G+KL  R  R ++LT++GS  
Sbjct: 6   QLETFVAVATKGSLTAAAHAEGVAPAIIGRRIDALEARLGVKLLLRTTRRISLTDEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L+  +  +    VK SG LRI      G+  +   +  FL  +P++ + L
Sbjct: 66  LEDCQRLLAELQNAEASVSAGGVKASGHLRITAPAGFGRRHIAPLIPGFLDQHPEVSLSL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+R+   +  SSL+  +L        AAP YL+    P +  +L
Sbjct: 126 DLTDRLVDLVNEGYDCAVRV-GDLADSSLVSLRLADNRRVCVAAPSYLQRHGTPATPSDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H  + +  +     +   W+   +  I   R++  +       + Q+C+ G GIA   
Sbjct: 185 ARHQCLAYSSV---SSQPRGWMFQAEGEILHVRVAGRMDCTDGAVLHQWCLEGRGIAWRS 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V    +   LV ++ED   P   ++  + +      +L+ + +++
Sbjct: 242 LWEVGASLEQGKLVALLEDFAAPPNGIFAVFTQRKHQPLRLRLWLDYL 289


>gi|207723441|ref|YP_002253840.1| hypothetical protein RSMK00713 [Ralstonia solanacearum MolK2]
 gi|206588642|emb|CAQ35605.1| hypothetical protein RSMK00713 [Ralstonia solanacearum MolK2]
          Length = 300

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 129/287 (44%), Gaps = 12/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS T AA+ L +S++ ++R ++ +ET  G +L +R  R + LT  G      
Sbjct: 9   VFVAIVDRGSLTAAADALDMSRAMVTRYLAQMETWSGARLLHRTTRRIGLTPAGEATLAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++        +     +  P G LR+A    L Q +L   +  +L  YPD  I L++D
Sbjct: 69  CRQMLEIAGQMPVSAGPETDTPRGLLRVACAQVLAQQVLGEAVTAYLRRYPDTAIDLVVD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +++  +  D A+R+   +   +LI R L +      AAP YL     P  +++L  H
Sbjct: 129 NRTVNLVEERIDLAVRITNDLD-PNLIARPLGSCESVVCAAPAYLAAHGTPRRVEDLAVH 187

Query: 190 NLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           N +T   FG  + +  E     A    P   P    L  N  ++++     G+GI + P 
Sbjct: 188 NCLTYSYFGKSLWRFTE-----ARTGEPAAVPVGGNLSANESMALLAAVKAGAGIGMQPA 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +       +  LVR++ D +  +  ++  Y    +    L+A  +F+
Sbjct: 243 FAAAPLIASGQLVRLLPDHVPQALGIHGVYSSRRQMPAALRAMLDFL 289


>gi|254420174|ref|ZP_05033898.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
 gi|196186351|gb|EDX81327.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
          Length = 291

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 129/278 (46%), Gaps = 13/278 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  WD +  F  VA   SF+ AA++L LS S++SR+I+ LE  +  +L  R  R + LT
Sbjct: 1   MSSRWDGIDEFTAVAEQASFSTAAKRLGLSTSAVSREIARLEDRLQTRLLNRTTRRVELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G         +  + +     +Q     P G LR+  ++  G+  +   +  F   + 
Sbjct: 61  DAGRDFLARCRRLIDERDEALAAVQPDDSAPRGLLRMTCSVSYGERFVAPAVNRFARDHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L LDN+  D+  D  D AIR    +  S LI R+L +  +   AAP YL     P
Sbjct: 121 ELSIELDLDNRLRDLVGDGYDLAIRF-GHLTDSRLIARRLASRRLILCAAPAYLARRGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + EL  H+L+T      +  E      T  RP G  R  C   NS  +++   + G G
Sbjct: 180 RDLSELPAHDLLTGSSEHWRFSEAGR--ETSFRPQG--RWRC---NSGAAVLDAAIQGLG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDVIT----PSFTVYFCYP 274
           +  LPD+ V + P    ++  ++T    P   V+  +P
Sbjct: 233 LCQLPDFYVTE-PLRAGVLTALLTEHRPPDEGVWAVHP 269


>gi|163857450|ref|YP_001631748.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261178|emb|CAP43480.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 317

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 125/252 (49%), Gaps = 25/252 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           ++VF  V   GS + AA++L +S++ +SR ++ LE  VG++L +R  R L+LT  G+   
Sbjct: 22  MQVFVEVVDRGSLSAAAQRLDMSRAMVSRYLAELEEWVGVRLLHRTTRRLSLTPAGAETL 81

Query: 65  ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               ++  +  E++  + T   E       P G+LR+  ++  G   L   + +F++ YP
Sbjct: 82  PRCRRMLDLVGEMHESVATPDTE-------PRGELRMTVSLSFGAAQLGCAVADFVVRYP 134

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              I L L ++ +++  +  D A+R+   +   +LI RKL        AAP YL+    P
Sbjct: 135 GTSIDLQLIDRTVNLVQERVDLAVRITNELD-PNLIARKLAPCRSVVCAAPSYLQAYGSP 193

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
              ++L KHN +T   +G  + +   D  W   VD P+       +  N  L + +    
Sbjct: 194 SRPEDLAKHNCLTHSHYGKSLWRFRRDNAW---VDVPVS----GNITANDALLLARAAAQ 246

Query: 238 GSGIALLPDYIV 249
           GSGIALLP Y+ 
Sbjct: 247 GSGIALLPSYLA 258


>gi|163734371|ref|ZP_02141811.1| Transcriptional regulator, LysR family protein [Roseobacter
           litoralis Och 149]
 gi|161392379|gb|EDQ16708.1| Transcriptional regulator, LysR family protein [Roseobacter
           litoralis Och 149]
          Length = 303

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 139/300 (46%), Gaps = 11/300 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   GS + AA  +  + S++S+QI  LE  V  +L  R   G++ T++G   
Sbjct: 6   QMLIFATVVEQGSISAAARSMGQTPSAVSKQIGLLEDHVHYRLLNRTRTGVSPTQEGQDF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  K +  +  +        G L++A+T+  G++ L   L  F+   P++Q+ L
Sbjct: 66  YEKCRAMAEKFKEAEAMIHTLDGVARGTLKVASTVAFGKSQLIPALPAFMEENPEVQVAL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +++ID+  +  D AI   +  ++  ++ R+++       AAP YL+    P S  EL
Sbjct: 126 DLTDREIDLQSEGFDVAICFAEQRKNPDIVVRRIMQSRRVLCAAPSYLERSGTPTSFAEL 185

Query: 187 DKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             HN +   G+       D + ++      G       Q NS   + +  + G GIA LP
Sbjct: 186 AHHNCLRIAGNSRRNAWSDGDSISC----DGFEAQGSFQGNSTDVVFRAALAGIGIARLP 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWKF 299
            Y+      +  LV++M +   PS  +   +PE      K +AF +F+   F + RD++ 
Sbjct: 242 CYMANRKFQSGELVQVMPEYAPPSTDIVVMFPEKRNLAPKTRAFVDFLVRRFREVRDYQM 301


>gi|209516804|ref|ZP_03265655.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209502767|gb|EEA02772.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 330

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 17/294 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS----KL 66
           F  VA  GSF  A ++L + +S++SR +  LE ++  +LF R  R  +LT +G       
Sbjct: 29  FLAVANEGSFAKAGDRLGIGRSAVSRNVQKLEAQLDARLFLRTTRSTSLTREGELFYQNC 88

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H     +   LE  + EL+     P G LRI +T   G+ ++   L+ F   YPDI ++L
Sbjct: 89  HPGVERIVQALEDMR-ELRNG--PPRGHLRICSTPGFGRKIVAPLLRGFRSRYPDIALEL 145

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+++  D   D  D   R  + ++ S ++ ++L+ + M   A+P Y K    P  + +L
Sbjct: 146 LLNDRPADFIADRVDVGFRDGR-MEDSEVVAKQLIPMQMIVCASPQYAKKHGVPRHVDDL 204

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I F     +     +W   VD  I +  PR      N    I+Q  + G GIA L
Sbjct: 205 AQHRCINFRSASGRVS---DWEFKVDGLIQKQLPRAQ-HTFNDVDLIVQAVLDGEGIAQL 260

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P Y V D     +L+  +          Y CY        +++ F +++  + R
Sbjct: 261 PAYQVCDLLRREHLISCLAQYAPDDRGHYVCYLSRKHLPARIRVFIDYMAEQTR 314


>gi|163857641|ref|YP_001631939.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261369|emb|CAP43671.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 289

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 15/292 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  + R G+   AA  L + Q++  R+++ +E  +  +LF R  RG   T  
Sbjct: 1   MNWDDARIFLAIYRVGTLRGAAAVLQVDQATAGRRLAAIEASLQARLFLRTPRGYVPTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    +  Q +LQ    + SG +R+AT+  LG++ L    K   + +PDI
Sbjct: 61  GELAFAAAERMEQAADQLQRQLQGLDARLSGVVRVATSDTLGRHYLLEAFKRVQVEHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    +  +++   AD A+R  +P  +  LI R L    M  YA+  Y++   EP  
Sbjct: 121 RVVLSTSTQITNLTRREADIAVRNVRP-DNPDLIHRHLARREMGLYASAAYVQEHGEPRL 179

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLG 238
                 H L+ +    IP  ++ F          GEP  +    L+VNS L +++  V G
Sbjct: 180 GTAFAGHRLVAYQRSAIPGRLDAF---------CGEPTRNGQVVLEVNSGLMMLEAVVRG 230

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  LP  +    P LVR+       S+ ++      L+ + +++A  + I
Sbjct: 231 LGIGELPVMLAGTYPALVRLWPQR-AESYDLWLVLHGDLRRSARVRAIADAI 281


>gi|33521052|gb|AAQ21353.1| Csw018 [uncultured bacterium]
          Length = 301

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 132/292 (45%), Gaps = 24/292 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A +G+FT AA Q  L+ +++SR I  LE  + ++LF R  R + LT+ G    
Sbjct: 13  IELFCLAADTGNFTAAASQAGLTPAAVSRAIGRLEDRLQVRLFVRSTRKIRLTDGGRAYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   ++   +  L  +  +P+G++R++    LG   +   L  F   YP +Q+++ 
Sbjct: 73  EQCRQALAQINEAERALTGTQAEPAGRIRVSVPTTLGHCRILPALPGFRKRYPKVQVEVQ 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+++D + D  D AIR R     S L+ RKL+   +     P YL+    P S  +L 
Sbjct: 133 LSNRNVDFTTDEFDLAIRARAQ-ADSGLVARKLMDAELVVVGTPAYLRKAGVPKSPDDLA 191

Query: 188 KHNLITFGDLIPKCMEDFNW----------LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           KH  I F  L+P       W          LAT          +C   +  L ++     
Sbjct: 192 KHECIQF--LLPSTGLLVPWSFHHQGQDLELAT------SGGFTC--TDDLLGMVTLARH 241

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+G+     +IV+D+     L  +++D    S      YP A     +++AF
Sbjct: 242 GAGLLQTYRFIVEDDLAQGRLREVLKDFGGRSRPFSIIYPGARHMPLRVRAF 293


>gi|311109094|ref|YP_003981947.1| HTH-type transcriptional regulator YafC 2 [Achromobacter
           xylosoxidans A8]
 gi|310763783|gb|ADP19232.1| uncharacterized HTH-type transcriptional regulator YafC 2
           [Achromobacter xylosoxidans A8]
          Length = 293

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 149/311 (47%), Gaps = 35/311 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS + D LR+F  V  +GS + AAE L  + S +SR +S LE E+G+ L  R  R + LT
Sbjct: 1   MSLNSDALRLFLGVVDAGSLSAAAELLGHTASGVSRGLSRLEEELGVTLLNRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   L+  +  ++    +P+G+LR+  ++ +  + +   + EF   YP
Sbjct: 61  EEGKHFLPKARHIVASLDEAEDCMRMVHQRPAGRLRVDASVPVMLHCVVPLVAEFRREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  +++ +D+     D A+R+  P+  S+L  R L        A+P Y+     P
Sbjct: 121 AITLELTSNDRIVDLMEHRTDVALRM-GPLTDSTLHARPLRPSPRWVMASPDYVARRGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--------NWLATVDRPIGEPRISCLQVNSYLSIM 232
            ++++L  H ++ F    P+ +  +        ++LA          +  L  +S  +  
Sbjct: 180 ETVEDLAAHEVLGFTQ--PESLNVWPLRHAGGSSYLA----------MPTLATSSGETQR 227

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIME----DVITPSFTVYFCYPEALKNTGKLKA 285
           Q  V G GIA L D++V+++     LV++ME    D + P   VY+      +NT   + 
Sbjct: 228 QLAVRGVGIACLSDFVVREDVKAGRLVKLMEAAHTDYLQPMHAVYY------RNTQLSRR 281

Query: 286 FRNFI-FLKAR 295
              F+ FL AR
Sbjct: 282 IACFLDFLAAR 292


>gi|300310802|ref|YP_003774894.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300073587|gb|ADJ62986.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 304

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 142/294 (48%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F VVAR  SF  +A ++  S + IS++I+ LE  +G++LF+R  R + +TE+G  
Sbjct: 8   EDLRLFCVVARHSSFAGSAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEEGGN 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +H     +   +E     +  +   P G L+I+T+  LG+ ++   L  F   +P+++IQ
Sbjct: 68  VHEWARRILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKIQ 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ID+  +  D  IR+        L  ++++       A+P YLK    P  +  
Sbjct: 128 LELVDRQIDLVNEGIDLDIRVGAG-HEPHLFSKRILPSQRVLCASPAYLKKHGLPADLAA 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L +H  +         + + N    + R +G   +  ++V+  L+      I Q+ V G 
Sbjct: 187 LRQHQCLV--------IRERNQSFGIWRMMGPKGVETVKVSGMLASNHGEIIHQWAVDGH 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI L   + V D+     LVR++      +  +   YP  LKN+ K++    F+
Sbjct: 239 GIILRSAWDVADSLKRGRLVRVLPQYYQEA-DLCAVYPLQLKNSAKVRECVRFL 291


>gi|227329410|ref|ZP_03833434.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 293

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 130/288 (45%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  +GSF+ A+ +L + Q ++S+ I  LE ++   L  R  RGLT TE G   +
Sbjct: 7   LETFICVFETGSFSAASRRLGIGQPAVSKAIMQLENQLATPLLLRSTRGLTPTEAGQNFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +     L   Q  +   S   SG+LRI   +   + L+   L EF+  +P + I +I
Sbjct: 67  EQIAPALKVLGDAQEHVVSGSTALSGRLRIGAPVTFARQLIIPRLHEFMAEHPQLNIDVI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ ID+  +  D A+RL + ++ SSLI ++L +  M   A P Y      P S   L 
Sbjct: 127 LDDRPIDLIAEGIDVALRLGE-MKDSSLIAQRLASCSMRLLATPDYFARHGVPDSPDVLA 185

Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  + +  G+   + +   N   T   P G  R+S  +      +    + G G+ +  
Sbjct: 186 AHPAVIYLQGERTDRWIFSRNGTQTTVFPNGRIRVSAAE-----GVRAAVLSGVGLIVAS 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++     ++  +V  ++        ++  YP     + + + F +F+
Sbjct: 241 EWMFAPELESGQVVTALDSWSLGKMDLWAVYPGGRMTSARARIFTDFV 288


>gi|156936316|ref|YP_001440232.1| hypothetical protein ESA_04216 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534570|gb|ABU79396.1| hypothetical protein ESA_04216 [Cronobacter sakazakii ATCC BAA-894]
          Length = 299

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 11/273 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SFT AAE L L + S+SRQ+  LE+ +G +L +R  R + LT+ G   +
Sbjct: 7   MRLFVRVAELESFTRAAETLSLPKGSVSRQVQALESALGTRLLHRTTRRVHLTQDGQVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+             SG+LR+   + + QN++   L EFL  YP I ++L 
Sbjct: 67  ERARDLLANLDELDGLFLHDPASVSGRLRVDMPVAVAQNVVIPRLPEFLHHYPGIALELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+ + ++ S L+ R L  +     A+P YL     P ++ +L 
Sbjct: 127 SSDRLVDVVREGFDCVVRVGQ-LKDSGLVARPLGKLSQVNCASPDYLARFGIPETLDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALL 244
            H L+ +   +      F     + R  G    P    L VNS  +    C  G GI  +
Sbjct: 186 SHALVHYTPTLGTRPAGFE----IGRESGSEWIPTGGVLTVNSTETYQAACFAGLGIIQV 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           P   V++   +  LV ++         V   YP
Sbjct: 242 PRIGVREALRSGKLVEVLPQYRAAPMPVSLIYP 274


>gi|312963010|ref|ZP_07777496.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311282779|gb|EFQ61374.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 298

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 129/262 (49%), Gaps = 16/262 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L++F  V   GS + AAEQ+  + S++SR +S LE ++   L  R  R + LTE+G  
Sbjct: 6   DELQIFVSVIECGSISAAAEQVGQTPSAVSRTLSRLEAKLDTTLINRTTRRMDLTEEGKY 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++  +  L      P+G+LRI   +    + +   + EF  LYPDIQ++
Sbjct: 66  FFEQAKLILAQMDELEERLSSRQKNPAGRLRINAAVPFMLHGIVPYIAEFRSLYPDIQLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D+  ID+     D AIR+   +  S+L  R L    +H  A+P YLK    P ++ +
Sbjct: 126 LNSDDLIIDLLEQSTDIAIRI-GALADSTLHARSLGCTPLHILASPDYLKQYGAPQTVAD 184

Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L KH L+ F        E  N W L  V  DR + EP I+    +S  ++ Q  + G GI
Sbjct: 185 LAKHTLLGFTQ-----TETLNHWPLRHVEGDRWLIEPGIA---ASSGETLRQLALQGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIME 260
             L +++     D   LV ++E
Sbjct: 237 CCLSNFMTSADIDAGRLVPVLE 258


>gi|146308176|ref|YP_001188641.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576377|gb|ABP85909.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 294

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 131/257 (50%), Gaps = 20/257 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ L+ F  VARSGS T AA +L +SQS++SR+I+ LE  +G  LF RH  G  +T++
Sbjct: 1   MDWNDLKYFLAVARSGSLTQAATELAVSQSTVSRRITELEQSIGTILFQRHQTGYFVTDE 60

Query: 63  GSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L     RV   +   LE     L +   KP+G +R+AT+ +L  +L+   L  F   
Sbjct: 61  GGELLCHAERVEESIM-ALERGAAGLDK---KPAGSVRLATSENLATDLIIPALPAFRER 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP I +++I      +++   AD A+R+ +P    +L  R++  +    Y +  YL+  R
Sbjct: 117 YPGICLEIITSTVTAELNRREADIALRVVRP-SRGNLKVRRIGHMTYSVYGSRGYLE--R 173

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
            P +  + L   +LIT+ D     M    WLA        P      V S L      V 
Sbjct: 174 HPHIDGEPLGGRHLITWDD-SHGFMPAAAWLARE-----HPGCKVALVTSSLPTQIAAVR 227

Query: 237 LGSGIALLPDYI-VKDN 252
            G G+A++PD++ VK++
Sbjct: 228 AGLGLAVIPDFLAVKED 244


>gi|226945169|ref|YP_002800242.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226720096|gb|ACO79267.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 297

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 132/281 (46%), Gaps = 7/281 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F + A SGS+  AAE+L LS   +++ ++ LE  +G +L  R  R  +LTE GS  +  
Sbjct: 9   AFVMAAESGSYASAAERLGLSPQMVAKHVAALERRLGARLLNRTTRRQSLTELGSAYYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  + +      Q  +  P GKL+I+  +  G   L   + EFL  +P+++I L L 
Sbjct: 69  CKHILSEAQAADSLAQIMNDTPRGKLKISAPVTFGSYSLMPFVTEFLRQHPEVEIDLHLT 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  +   R+  P+ +SSL  + L    + A AAP YL +   P    +L  H
Sbjct: 129 DRFVDLVEEGYEVTFRI-GPLAASSLTAKPLAPYRLVACAAPSYLTDRGVPQIPGDLKNH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +         D  W+      +   + +  LQVN   +++   + G GI L P+  
Sbjct: 188 ECLGYAYWSRPA--DREWVFCKGSAVERVQVVGRLQVNESKALLSAALDGFGIVLGPEDF 245

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++    +  LVR++ D   PS  ++  Y    + T KL+ F
Sbjct: 246 LEPALRSGELVRLLADYEAPSRQMHLLYTANRQKTAKLRRF 286


>gi|152972380|ref|YP_001337526.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150957229|gb|ABR79259.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 299

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 21/294 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE L L + S+SRQI  LE+ +G++L +R  R + LT+ G   +
Sbjct: 7   MQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+      Q      SG+LR+   +   + ++  +L  FL  YP I+++L 
Sbjct: 67  ERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKMVIPHLPTFLQQYPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   ++ S LI R L  +     A+P YL     P S+++L 
Sbjct: 127 SSDRQVDVIREGFDCVVRV-GALKDSGLIARPLGKLTQINCASPDYLARFGYPQSLEDLA 185

Query: 188 KHNLITFGDLI---PKCME-----DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            H LI +   +   P   E        W+ T            L VNS  +    C+ G 
Sbjct: 186 DHALIHYASTLGVRPPGFEVMIDGAVRWVKTG---------GILTVNSTETYQAACIAGL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P   V++     +L+ I+         V   YP     + ++  F  ++
Sbjct: 237 GIIQVPRTGVREALRAGDLIEILPQYRAEPLPVSLIYPHRRNLSRRVNLFMEWL 290


>gi|119897452|ref|YP_932665.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119669865|emb|CAL93778.1| putative transcriptional regulator,LysR family [Azoarcus sp. BH72]
          Length = 321

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 125/271 (46%), Gaps = 9/271 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++ GLE  +G++L  R  R +TLT +GS  
Sbjct: 6   QIETFVAVASRGSLSAAARAEGVTPAVIGRRLDGLEARLGVRLLVRTTRSITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + L   +  +    VKPSG LR++     G+  +   ++EFLL  PD+   L
Sbjct: 66  LEDCQRILNDLSNAEASVSLGGVKPSGHLRVSAPAGFGRRHVAPLVREFLLANPDVSCSL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+R+   +  SSL+  KL        A+P YL     P + ++L
Sbjct: 126 DLSDRLVDLVNEGLDCAVRI-GDMADSSLVSVKLADNRRVVVASPDYLARHGVPRTPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +T          D    A   +  G  R+ C   N    + ++ + G G+A    
Sbjct: 185 PRHVCLTLVQQRGWQFADGRGGAVSAKVAG--RLEC---NDGAVLHEWALAGQGLAWRSL 239

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           + V ++     LV ++++       +Y  +P
Sbjct: 240 WEVSEDLAAGRLVSVLDEFAARPTGIYAVFP 270


>gi|298292745|ref|YP_003694684.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929256|gb|ADH90065.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 286

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 125/284 (44%), Gaps = 11/284 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  +R+F  +ARSG+   AA  LHLS  ++ R++  LE   G  LF R A G  LTE+
Sbjct: 1   MEWSDVRIFLAIARSGTLGAAARTLHLSHPTVGRRLRALEQATGHTLFQRTADGFVLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ +  +  ++       +  L        G LRI++    G  +L   + ++   YP +
Sbjct: 61  GNAVLPLAEQMEEGALAMERRLAGQEQNLQGTLRISSADWFGAYVLPPIIADYAKTYPHV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+++   +   ++   AD A R+  P  S  ++QR+L+ +   AY A        EP+ 
Sbjct: 121 DIEVLTGTRLFSLAQREADIAFRI-VPFDSPDVVQRRLIRLAYGAYVA----AGSPEPV- 174

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +     LIT  D       D  WL T   P   P    L+ N+     + C  G GI 
Sbjct: 175 YGDGAGFRLITH-DTSTGQFPDIAWL-TESFPNARP---ILRSNNRNVQGRMCSQGVGIC 229

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +LP  +    P L R+      P   ++  Y   ++   +L+AF
Sbjct: 230 VLPQVVGNQMPALRRLNLPAEPPGRDIWMGYHRDIRRLQRLRAF 273


>gi|218507139|ref|ZP_03505017.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 188

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 95/185 (51%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VAR  SFT AA +L +SQS++S  I GLE  +G++L  R  R ++ TE G +
Sbjct: 3   DDLIAFLAVAREQSFTKAAAKLGVSQSALSHTIRGLEARLGLRLLTRTTRSVSPTEAGER 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       + ++E++ + L     KP+G +RI        ++L   L+ FL  YPD++++
Sbjct: 63  LLVSIGPRFDEIESSLVALSAFRDKPAGTIRINAGEHAANSVLWPALERFLPEYPDVRVE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+D    DI  +  D  +RL + +    +  R    + M    AP Y     +PL+  +
Sbjct: 123 IIVDYGLTDIVAERYDAGVRLGEQVAKDMVAVRIGPDMRMAVVGAPTYFDARPKPLTPHD 182

Query: 186 LDKHN 190
           L  HN
Sbjct: 183 LTDHN 187


>gi|254449716|ref|ZP_05063153.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198264122|gb|EDY88392.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 300

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 129/290 (44%), Gaps = 6/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW+K R F V A  GS + AA  L ++Q ++ RQ+ GLE E+GI LF R  RGLTLT
Sbjct: 10  VKFDWNKARAFLVTAEEGSLSAAARALGMAQPTLGRQVDGLEQELGIVLFERVGRGLTLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L     ++        +     S    G + I+ +      LL   + +   + P
Sbjct: 70  PSGLELLEHVRDMGEAAGRVSMTALGQSQALEGTICISASETYAAVLLPPIIAKLRKMEP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+++++ N   D+    AD AIR  +P +   LI +K+       YA P Y+     P
Sbjct: 130 GIQVEIVVANHASDLRRREADIAIRNFRPTE-PDLIAKKIGDADAVLYATPDYIAEIGNP 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H      D     ++  N L         P    L   SYL + +    G+ 
Sbjct: 189 TKPYDL-RHAEFVNMDHSGMMLKGLNTLGLGLTGANFP----LLTESYLVMWELVRQGAA 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +L  +I   +P + R++ D+    F ++      L  + +++   +F+
Sbjct: 244 IGILDAHIGDADPVVRRVLPDLEPLVFPIWLVSHRQLTTSRRIRMVYDFL 293


>gi|58581747|ref|YP_200763.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623651|ref|YP_451023.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576832|ref|YP_001913761.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188577025|ref|YP_001913954.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426341|gb|AAW75378.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367591|dbj|BAE68749.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521284|gb|ACD59229.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521477|gb|ACD59422.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 337

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 22/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
             EL  H  ++  +      ++ +    +  P GE R+    +   L+   + +L     
Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGERRVD---LQPRLAGFDFPLLQSMAR 238

Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
            G GI +LP+ +  +    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 239 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 292


>gi|54309915|ref|YP_130935.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46914354|emb|CAG21133.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 299

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 14/297 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  +   GSF+ AA QL LS+  +S  +  LE  +G+ L  R  R +
Sbjct: 1   MDVSFEQLKSMVVFAKIVEQGSFSAAARQLGLSRGVVSYHLKKLEDHIGMPLLNRTTRSI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT+ G +  +    +  +     ++++    +P GKL I+  +++  + +   L  F  
Sbjct: 61  SLTDAGQRYFQRCKRISEEAAAANLQIENLREEPEGKLTISAPVNISMHTIVPALNTFKT 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP I+I L L +  ++I  +  D AIR   P+  S L  +KL+T+      +P Y    
Sbjct: 121 LYPKIEIDLNLTDDIVNIIQEGVDLAIR-GAPLADSGLYAKKLMTMKNILCGSPSYFNQH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P +  EL  H  + +     K       L    R         +  NS  +   + V 
Sbjct: 180 GIPRTPAELANHEWVVY-----KKTSKIQTLTKGTRSYNVKMQGSITTNSASARTAFVVG 234

Query: 238 GSGIALLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  LP Y    ++K    L  I+ED      T+Y  YP    ++ K++   +++
Sbjct: 235 GHGVGRLPIYDALPLIKAG-QLTPILEDYALSDITIYGVYPPRAADSKKMRLLLDYL 290


>gi|113968592|ref|YP_732385.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113883276|gb|ABI37328.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 305

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 145/293 (49%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SFT A+  L LS++ +S  ++  ET +G +L  R  R + LT+ G   +
Sbjct: 8   MQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLTQDGISCY 67

Query: 68  RVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +   Y +LE+   +LQ + V  SG+LR+  +  + +NL+  +L EF+  YP I++
Sbjct: 68  ERCKNLLTDYQELESL-FQLQAAQV--SGRLRVDMSTGIARNLVLPHLPEFIEQYPQIEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +DI  +  DC IR+   +Q   +I +K+    M    +P Y++   +P S++
Sbjct: 125 ELSSTDRKVDIVAEGFDCVIRV-GSVQQEGVIAKKIGHFKMLNCVSPSYIEKYGKPSSLE 183

Query: 185 ELDK-HNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240
           EL + H LI +   +      F +L+  +     +  P++  + VN+  +    C+ G G
Sbjct: 184 ELSQWHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKL--ITVNNADAYSAACLAGLG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   P+  V        L+ I+ D   PS  V   YP     + +L+ F  ++
Sbjct: 242 IIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVFMAWL 294


>gi|285018474|ref|YP_003376185.1| LysR family transcriptional regulator [Xanthomonas albilineans GPE
           PC73]
 gi|283473692|emb|CBA16195.1| putative transcriptional regulator, lysr family transcription
           regulator protein [Xanthomonas albilineans]
          Length = 311

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LE+++G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLESDLGVRLLQRSTRRFAVTDLG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +HR    +  + +  +  +   SV+P G +R++  + L Q  L   L  FL  YP ++
Sbjct: 63  MNVHRHAQMMLAEAQAAREVVDRLSVEPRGLVRVSVPVSLAQMQLPKLLPMFLDRYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +DI  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 123 LQLNISNRRVDIINEGYDVALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKE 182

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +EL  H  ++   D + +  E       V R   +PR++        S+++    G G+
Sbjct: 183 PEELASHVTLSISEDEVRQHWELHGPAGEVRRVDLQPRVAGFDFPLLQSMVKD---GFGV 239

Query: 242 ALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
            LLP+ +  +    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 240 TLLPETVCAEA---VRNGELEVVLPKWSLPQGICHAVFASRRGLLPAVRVFI 288


>gi|260553964|ref|ZP_05826230.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260404918|gb|EEW98422.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 310

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 119/255 (46%), Gaps = 13/255 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKKITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+     P 
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQKYHLAASPQYIAKYGTPD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236
              EL++H  + +     K  E  N WL  V +P  E    P    L  N+  S+M   +
Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWL--VRKPNEEWVHYPITPLLSSNNAESLMTAAL 237

Query: 237 LGSGIALLPDYIVKD 251
            G GI L PD+++ +
Sbjct: 238 HGMGIVLFPDWLIGE 252


>gi|91787738|ref|YP_548690.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91696963|gb|ABE43792.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 300

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 147/311 (47%), Gaps = 30/311 (9%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR    F  V ++GSF  AAE+L  S++++SR +  LE  +  +L  R  R  +LTE 
Sbjct: 2   DQLRQIETFVAVVQNGSFVKAAEKLGDSKAAVSRLVLELEARLDTRLLNRTTRKQSLTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+       ++   L    +    S+ +P G+LRI   +  G   L      FL  +PD+
Sbjct: 62  GADYFERCRKILDDLAEANLAASASTARPVGRLRINAPVSFGNLHLAPLWGGFLQRHPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL- 181
            + + L ++ +D+  D  D AIR+ + + +SSLI R+L +  +   A+P YLK  R+   
Sbjct: 122 TLDVTLSDRQVDLVEDGYDLAIRIAR-LLNSSLISRQLASTRLVLCASPAYLKLKRQARL 180

Query: 182 -SIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIM 232
            +I+++  H +I +     GD         +W    + P G   +   + L+ NS  + +
Sbjct: 181 STIEDIAAHPVIAYSYWSGGD---------SW--AFEGPEGPVEVLTQARLRSNSGDTCL 229

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + G G+ L P +IV  +     LV ++     P+  ++  YP     + K++    +
Sbjct: 230 AAALAGQGLILQPTFIVGADLKAGRLVEVLPHYRAPTLAIHAVYPSRQHLSVKVRRMVEY 289

Query: 290 I--FLKARDWK 298
           +    K  DW+
Sbjct: 290 LAGAFKKPDWE 300


>gi|300714723|ref|YP_003739526.1| O-succinylbenzoate synthase [Erwinia billingiae Eb661]
 gi|299060559|emb|CAX57666.1| O-succinylbenzoate synthase [Erwinia billingiae Eb661]
          Length = 299

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 129/287 (44%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA   SFT AA+ L L + S+SRQ+  LE  +G +L +R  R + LT+ G   +
Sbjct: 7   MQVFVRVAELQSFTRAADSLGLPKGSLSRQLQALENSMGTRLLHRTTRRVQLTQDGLVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   LE      Q      SG+LR+  ++ L  N +   L +FL  YP I+++L 
Sbjct: 67  ERCRDVLATLEEMDSLFQHDPTTLSGRLRVDMSVSLASNFILPLLPQFLQQYPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC IR    +  S LI R L  +     A+P YL+    P ++ +L 
Sbjct: 127 SSDRRVDVIREGFDCVIR-GGTLGDSGLIARPLGKMTQINCASPDYLERFGTPQTLDDLG 185

Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H ++ +   +    + F  W     R I       + VN+ ++    C+ G GI   P 
Sbjct: 186 QHAMVHYSQQLGVHPQGFEYWDGKTTRFIQTG--GAVTVNNTVTYQSACLSGLGIIQAPL 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +K    N  LV ++         +   YP       ++  F  +I
Sbjct: 244 AGMKASLANKTLVEVLPHFRAEPMPISLIYPHRRNLARRVHVFMEWI 290


>gi|209522430|ref|ZP_03271035.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209497133|gb|EDZ97383.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 312

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 134/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  SGSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVESGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YPD+ I+L
Sbjct: 66  LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVSRYQERYPDVHIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ L   +  S L+ ++L +    A A+P YL+    P    +L
Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLERRGVPQKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
            +H  +    ++        W  T D P GE  +    +  QVN   ++      G G+A
Sbjct: 186 AQHTCL---QMVSPISPPDKW--TFDGPNGEEIVPLGATTFQVNVAEAMAVAVSEGMGVA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L+P Y       +  LV ++ +  +    +Y  YP       K++ +  F+
Sbjct: 241 LIPIYSAISGLRSGELVWLLPEYTSQQMNLYALYPSRQYLDAKIRTWVEFL 291


>gi|307130652|ref|YP_003882668.1| LysR family transcriptional regulator [Dickeya dadantii 3937]
 gi|306528181|gb|ADM98111.1| Transcriptional regulator, LysR family, in glycolate utilization
           operon [Dickeya dadantii 3937]
          Length = 304

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 138/279 (49%), Gaps = 15/279 (5%)

Query: 1   MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M F  D+L +   F   A +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L
Sbjct: 1   MDFRMDRLLLMTCFVRTAETGSFSAAGRDLGLGQPNVSRHVATLEEHLQTRLLHRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT +G + +     +   +E ++   +E +V P+G LR+A    L    L  ++ +FL 
Sbjct: 61  SLTPEGERYYLEARRILEAVEESESSFRE-NVTPTGLLRVACPTALAHTFLVPHIPDFLE 119

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP++ ++L ++++ I++  + A+ AIR+   ++ S++  R+L        A+  YL   
Sbjct: 120 RYPELTLELQINDRYINLVDEGAELAIRIGH-LEDSAMRARRLGMYERVCVASNKYLAKH 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P + ++L KH+ + +  L       F       + I  P    L+VNS  ++ ++   
Sbjct: 179 GTPNTPEDLKKHDCLIYTLLTTGATWRF-------QDINVPISGRLRVNSPEAVQKFVNA 231

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           G GIA  P+++ +   +N NL  ++ D   P   +   Y
Sbjct: 232 GVGIAQGPEWLFEEGLENGNLQLLLTDYTAPPVPIQAVY 270


>gi|222147135|ref|YP_002548092.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221734125|gb|ACM35088.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 296

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 134/290 (46%), Gaps = 13/290 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   VA + SF  AAE+L ++ S++S  +S LE  +G++L  R  R +  TE+G +L
Sbjct: 8   QLAVLATVAETSSFRKAAEELGIAPSAVSHAVSALEASLGVRLLARTTRSVAPTEEGRQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  +     + T    L E+   P+G LRI       ++L+   L +FL LYPDIQ++L
Sbjct: 68  LQKLAPALADIGTALETLAENKSNPAGPLRITMPALAAEDLIVPRLGDFLGLYPDIQLEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I +++  DI     D  +RL + +++  +  +    I      AP Y +    P+   +L
Sbjct: 128 ITNDQFEDIVEKGFDAGLRLGEHLETDMVAVKASGPISGTIIGAPSYFERHPLPVHPHDL 187

Query: 187 DKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  I    + G +    +E       VD P        L +     I    + G G+A
Sbjct: 188 MEHRCIRRRFSSGRIYRWELEKHGKQIAVDVP------DVLTLADQRLIRLAALKGVGLA 241

Query: 243 LLPDYIV-KD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + D  V KD     L+R++ED   P    Y  YP   +    L+AF +F
Sbjct: 242 FVFDQRVDKDIREGRLIRVLEDWCPPFDGFYIYYPTRRQMRPALRAFVDF 291


>gi|323139326|ref|ZP_08074378.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC
           49242]
 gi|322395392|gb|EFX97941.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC
           49242]
          Length = 295

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 138/294 (46%), Gaps = 10/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    +L VF  V   G F+ AA  ++LSQ S+SR +  LET +G+KL  R  R L LT
Sbjct: 1   MSDRLQELAVFIRVGERGGFSRAARDMNLSQPSVSRIVGELETRLGVKLLLRSTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +      E+   LE  + +         G +R+A  +  G   +   LKEFL  +P
Sbjct: 61  PAGEQFLARAREILADLENAE-DAARGVDSLRGTIRLAVPVIYGMRRIIPRLKEFLDRHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L + +   D+  +  D A+R+ K ++ S    RKL T+     AAP YL+    P
Sbjct: 120 QLRMELRVSDAHQDLVAEGVDIAVRVGK-LRDSPFGARKLATLQRLLAAAPSYLETRGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  +L +H+ I FG   P  +    W+    D  +       + V+S   ++   + G 
Sbjct: 179 RTPADLAQHDCI-FG---PNSLGLETWIFRRRDTVVSVEVAGRIHVDSGPGVLASAISGL 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA++P  + ++   +  LV ++ +       V+  +P     + K++A   ++
Sbjct: 235 GIAVVPSAMGEEEIRSGALVPLLTNYTLEPVDVHAIFPGGPHPSPKVRALTEYL 288


>gi|194434892|ref|ZP_03067138.1| transcriptional activator AaeR [Shigella dysenteriae 1012]
 gi|194416868|gb|EDX32991.1| transcriptional activator AaeR [Shigella dysenteriae 1012]
 gi|332086509|gb|EGI91656.1| HTH-type transcriptional activator aaeR [Shigella dysenteriae
           155-74]
          Length = 309

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRHLGAMPMVVCAAKSYLTQYGIPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +        E         RPI + R      N  ++++++   G+GIA +P
Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRPIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240


>gi|167646347|ref|YP_001684010.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167348777|gb|ABZ71512.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 289

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 122/275 (44%), Gaps = 19/275 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W  L +F  +AR G+   AA +L  SQ ++ R++  LE   G  LF R A G  LT++
Sbjct: 4   FEWSDLPIFLAIAREGTLGAAARRLGQSQPTMGRRLKALEIATGAALFQRTADGFVLTDE 63

Query: 63  GSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G  L     R+ +E    + T    L        G LR++ +   G+ LL   L E   L
Sbjct: 64  GQALLAHAERMETESLALMRT----LSGRDAALEGSLRVSCSDWFGRVLLAPVLAELAQL 119

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P + ++ + D +   ++   AD  +R+  P   + +I R+LVTI    Y  P       
Sbjct: 120 HPGVVVETLTDPRIYSLARREADLVVRM-VPFNEAEVIARRLVTISYGLYGRPDAAAA-- 176

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
               I E + H L+   D     M D  W   + R +   RI+  + NS     Q C LG
Sbjct: 177 ---PIGEGEDHALVVM-DTAFGGMPDVAW---ITRRLPRARIAS-RSNSREVQAQLCALG 228

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +G+A+LP  +      + RI  +   PS   +  Y
Sbjct: 229 AGLAVLPRPLGDAAEGIERIELEEDPPSRIQWMGY 263


>gi|56695772|ref|YP_166123.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56677509|gb|AAV94175.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 307

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 128/268 (47%), Gaps = 8/268 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   GS + A   L +S +  S +IS LE  + ++LF R  R LT TEQG  
Sbjct: 5   DNIRTFVRVYELGSMSAAGRDLRISPAVTSARISQLEDHLNVRLFQRTTRNLTPTEQGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   ++  + ++   +  P G L +A  + LG+ LL  N+ +FL  YP+I I+
Sbjct: 65  FYPGAVAVLDAVDEAEAQVMHLTEAPRGSLFVAAPLGLGRRLLAPNVPDFLAQYPEIDIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ID++ +  D A  L +P + S+L  RK+        AAP Y+K    P + Q+
Sbjct: 125 LRLTDRTIDLTTEGLDLAFFLGQP-EDSNLRIRKIADCRRVLCAAPDYVKRRGLPATGQD 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L   +H  +      P   E F W L T + P         + +    +  + + G GIA
Sbjct: 184 LITGRHECLNL--RFPGATE-FQWLLQTAEGPRRFAVSGRHECDDGDVLTDWALTGQGIA 240

Query: 243 LLPDYIVKDNPNLVRIMEDVI-TPSFTV 269
           + P + V ++    R++   + TP  TV
Sbjct: 241 MKPVFEVAEHLKAGRLVPVAVDTPPVTV 268


>gi|83748877|ref|ZP_00945888.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83724443|gb|EAP71610.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 336

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 129/274 (47%), Gaps = 9/274 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF     +G F  AAE+L LS+S++ + I+ LET +G++LF+R  R   LTE G  
Sbjct: 10  DGVAVFVEAVEAGGFARAAERLALSRSAVGKSIARLETRLGVRLFHRTTRTQNLTEDGQI 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +L   +  L+    + +G+LR+   +  G+  +   L +F   +P ++++
Sbjct: 70  YYERCLRAIEELRVAESLLESGKQEVAGRLRMTMPVLFGRYCIAPILLDFAREHPKLELE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  D  IR     +++ L  R L T      AAP YLK   EP +I+ 
Sbjct: 130 LSFSDRPVDMIAEGFDLGIRSGALGEATGLCARPLATQPKVLCAAPDYLKARGEPDTIET 189

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L  H+++       +    + W L   D  + E R+ S L+ +         V G GIA 
Sbjct: 190 LATHDVLIHW----RTGHPYPWLLPGADGRLTEVRLASRLRFDDLEVTADAAVAGMGIAW 245

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           LP ++V+D      LV + E     S   +  +P
Sbjct: 246 LPHWLVRDRIQAGALVALWEKRPAASMDSHAIWP 279


>gi|330950551|gb|EGH50811.1| LysR family transcriptional regulator [Pseudomonas syringae Cit 7]
          Length = 303

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 136/306 (44%), Gaps = 13/306 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD + + +F  V RSGSF  AA  L +  ++ISR++  LE ++  +L  R  R L LT
Sbjct: 1   MVFDLNDVALFVQVVRSGSFAQAARHLGMPSNTISRRVQQLEMQLDTRLLQRSTRKLVLT 60

Query: 61  EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           + G   + R    V   +E  + +L     +P G +RIA   D         + +FL  Y
Sbjct: 61  QAGEDFYGRCVGAVDGVMEAAE-QLASGRDEPGGLVRIAAMADFFDFFSMDWVADFLARY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178
           P +Q++ +L +   D+  D  D A R   P+Q S  + R+L+   H    A+P Y+    
Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDESHDTMVASPTYIAAYG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
            P S+Q L  H  ++             W L   D  + E  I+     N+  ++ +  +
Sbjct: 179 MPDSLQSLHSHYCVSAAHRGGVTA----WRLLGPDAKMHEVHIASRFNANTAQALRKATL 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K
Sbjct: 235 AGLGIALLPATLIRSDLRDGRLVPVLAQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDK 294

Query: 294 ARDWKF 299
            RD  F
Sbjct: 295 LRDKAF 300


>gi|325276470|ref|ZP_08142232.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324098392|gb|EGB96476.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 304

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 134/297 (45%), Gaps = 14/297 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L  R  R L+LT  G +
Sbjct: 5   NAMRVFVTVVDLGSQSAAADHLQLSRPVVSRYLAELEDWVGARLMQRTTRKLSLTAAGQE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +       Q  +Q+    P G LRI+ +   GQ  L   +  ++  YP ++++
Sbjct: 65  TLPRCRHLLDLAGELQAAVQQPDDAPKGALRISVSTSFGQAQLVDAIAAYVQRYPGVKVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  D AIR    +   +LI R+L        AAP YL     P  ++E
Sbjct: 125 LQMLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLSVCRSVVCAAPAYLHEHGTPQQVEE 183

Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +HN +T   FG      +  F+      + +  P    +  N  +++ +  + G+GIA
Sbjct: 184 LSRHNCLTHAYFG----HSLWHFD---VAGQQVSVPVAGNISANEAMTLQKAALAGAGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +LP Y   D      LVR++         +   Y         L++  +F+  + +D
Sbjct: 237 MLPTYQAADALRKGELVRLLAHARPRELNLNAVYTSRKHMPATLRSMLDFLVERFKD 293


>gi|322831699|ref|YP_004211726.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166900|gb|ADW72599.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 297

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 128/274 (46%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F +VAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLMVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++          LE     L + +   SG +R++      +NL+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIADLEQELESLVQLNGTASGNIRLSAGEHAARNLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  ++I     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 LELVVDNGFVNIVEGRFDAGIRLGESVDKDMIAVRIGPDMRMAVVGAPSYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       +  N     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVRVEGQVTFNLQAERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+  V D   +  L++I++D   PSF  Y+ Y
Sbjct: 243 CIPEDRVLDYIKSGELIQILQD-WCPSFPGYYLY 275


>gi|253689059|ref|YP_003018249.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755637|gb|ACT13713.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 310

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 96/185 (51%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A+ GSFT AAE+L L++S++ + +S LE  +G+KLF R  R L+LT  G +  
Sbjct: 17  INAFVTTAQQGSFTAAAERLGLTKSAVGKSVSRLEDRLGLKLFQRSTRRLSLTPDGERFL 76

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE  + EL     +P+G+LR+      G+  +   L      YP++ + + 
Sbjct: 77  ASCQSAMDILEQAEAELTSHLCQPAGRLRVDLPAAFGRQRILPILLNITRRYPELALTVT 136

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              + +D   D  D  IR+ +   SS L+ R+L T  +   A+P YL N  EP+S++ L 
Sbjct: 137 FSERFVDPIEDGIDLVIRIGELADSSGLVARRLTTQKLVICASPDYLLNQGEPVSVEALS 196

Query: 188 KHNLI 192
           +H+ +
Sbjct: 197 QHHCV 201


>gi|188583418|ref|YP_001926863.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179346916|gb|ACB82328.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 337

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 136/293 (46%), Gaps = 20/293 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  + R+GS + AA++L +S + +S+++  LE ++G++L  R  R L LTE+G +
Sbjct: 11  DDLRVFDAIVRAGSLSRAAQELDVSLTLVSKRLKRLEAQLGVRLLQRTTRQLGLTEEGQE 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      L+  Q   +      SG +R+  T    Q  +   L  FL LYPDI +Q
Sbjct: 71  F---LGRCRLALDAIQAAEEVCGDGHSGIVRVTATAAFAQRQIAPRLHRFLALYPDISVQ 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  +  +D+     D A+R + P+  S LI R LV       A+P YL     P    +
Sbjct: 128 ILTSDDVLDLVERRIDLAMR-QAPLADSRLIARPLVPDARVLCASPAYLAEAGTPRDPID 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS----GI 241
           L KH  +T GD  P     +    +V+       +S   V    +  + C +G+    GI
Sbjct: 187 LTKHACLTVGDPPPAQWRLWRGEESVE-------VSIRSVAGG-NDGEICHVGALADLGI 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFI 290
           A+   + V D+     LVRI+ +    +   V   YP  L    +++AF  F+
Sbjct: 239 AMKAAWDVVDDVRAGCLVRILPEWWGGTDRWVRIVYPARLHQPRRVRAFVAFM 291


>gi|207743736|ref|YP_002260128.1| hypothetical protein RSIPO_01917 [Ralstonia solanacearum IPO1609]
 gi|206595135|emb|CAQ62062.1| hypothetical protein RSIPO_01917 [Ralstonia solanacearum IPO1609]
          Length = 328

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 129/274 (47%), Gaps = 9/274 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF     +G F  AAE+L LS+S++ + I+ LET +G++LF+R  R   LTE G  
Sbjct: 2   DGVAVFVEAVEAGGFARAAERLALSRSAVGKSIARLETRLGVRLFHRTTRTQNLTEDGQI 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +L   +  L+    + +G+LR+   +  G+  +   L +F   +P ++++
Sbjct: 62  YYERCLRAIEELRVAESLLESGKQEVAGRLRMTMPVLFGRYCIAPILLDFAREHPKLELE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  D  IR     +++ L  R L T      AAP YLK   EP +I+ 
Sbjct: 122 LSFSDRPVDMIAEGFDLGIRSGALGEATGLCARPLATQPKVLCAAPDYLKARGEPDTIET 181

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L  H+++       +    + W L   D  + E R++  L+ +         V G GIA 
Sbjct: 182 LATHDVLIHW----RTGHPYPWLLPGADGRLTEVRLASRLRFDDLEVTADAAVAGMGIAW 237

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           LP ++V+D      LV + E     S   +  +P
Sbjct: 238 LPHWLVRDRIQAGALVALWEKRPAASMDSHAIWP 271


>gi|148553181|ref|YP_001260763.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498371|gb|ABQ66625.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 296

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 128/283 (45%), Gaps = 15/283 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  +  +GS + A  +L +S + +S++++ LE  +G  L +R  R L LT+ G   +  
Sbjct: 7   LFVTIVEAGSLSAAGRRLRISPAMVSKRLARLEARLGATLVHRTTRRLLLTDVGQGFYED 66

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S +   + T +  +     +P G+LR++     G+  +   L  FL  YP I++ L LD
Sbjct: 67  ASHILDAVRTAEARVAGRVGQPGGRLRVSAPTSFGRMHVAPYLHAFLDRYPRIELSLDLD 126

Query: 130 NKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +  +D+  +  D AIR+  +P    SL+   L        AAP YL     P ++ +L +
Sbjct: 127 DGFVDLLGERIDVAIRIATRP--EGSLVAHHLAENRRILCAAPAYLAAQGTPATLADLSR 184

Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H L+            F W L   D P+G   +S ++ NS     +  V G GIAL   +
Sbjct: 185 HRLLA-------ADHQFPWRLEGSDGPVGLDGVSAVRTNSSEVARELTVAGLGIALRSTW 237

Query: 248 IVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAF 286
            V     + +LVRI+ ++   +   +Y   P          AF
Sbjct: 238 DVGPALRDGSLVRILPEISGATDVAIYAVQPRGTAGAPNAGAF 280


>gi|320181667|gb|EFW56582.1| Transcriptional regulator, LysR family [Shigella boydii ATCC 9905]
          Length = 297

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 137/279 (49%), Gaps = 17/279 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F +VAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLLVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLRKYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVL 237
            EL  H  I     +P     ++W    +R   E +   ++V+  L+       +   + 
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHW--EFER---EGKTLRVKVDGQLTCSPLPERIDAALS 237

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           G GIA +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 238 GFGIACVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 275


>gi|315182133|gb|ADT89046.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 308

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 130/275 (47%), Gaps = 15/275 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA   SF+ AAE+L L ++S+S  I  LET+ G +L  R  R ++LT  G   +
Sbjct: 7   MHTFVRVAELASFSRAAEELGLPKASVSNHIQLLETQAGARLLQRTTRKVSLTPDGRTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  + E       ++  + SG++R+     + + ++  +L EFL  +P +Q++L 
Sbjct: 67  ERCLDLLAEFEELDTLFVQTEQQLSGRIRVDMPTGMAKGVVVPHLAEFLQQHPGVQLELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  +R  + +  S+LI RK+  + +  YA+P YL    EP +  +L 
Sbjct: 127 STDRRVDVVREGFDFVVRAGQ-LSDSALIARKVCDMAVRTYASPDYLARHGEPKTPDDLS 185

Query: 188 KHNLITFGDLI---PKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H L+ +   +   P   E  D   L T+D          L VN+  S    C+ G G+ 
Sbjct: 186 HHQLVHYAQNLGGQPDGWEYWDGERLHTID------MAGALTVNNAESYTAACLAGIGLI 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
             P+  V+    +  LV ++ +       VY  YP
Sbjct: 240 QTPESGVRKLVASGQLVEVLANFTCQPLPVYLLYP 274


>gi|288935133|ref|YP_003439192.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889842|gb|ADC58160.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 307

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 5/246 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT +G+  
Sbjct: 6   SLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++  + EL  S  +P+GKLRI+  + +G  LL   L  F  LYP +++ L
Sbjct: 66  LTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFTSLYPQVELDL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +++  +  D AIR  + +  S LI RKL        A+P YL     P S  EL
Sbjct: 125 DFSDRLVNLIDEGFDVAIRSGE-LADSRLIARKLGGFRFVLCASPAYLAEYGVPGSPAEL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  I F    P       W     R  G+ R +  + VN+  + ++    G GIA +P
Sbjct: 184 AAHKCIFF--RFPSTGLIQPWELRDMRLTGDFRATAVMTVNNIEAAIRLSAAGMGIAYVP 241

Query: 246 DYIVKD 251
           D++V++
Sbjct: 242 DFVVRE 247


>gi|78049436|ref|YP_365611.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037866|emb|CAJ25611.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 353

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 17/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE L +S++S+++ +  LE  + +KL  R  R + +T  G+
Sbjct: 49  FDAMQAFARVVETGSFTKAAEHLDMSRASVTQLVQQLEARLRVKLLNRTTRRVQVTADGA 108

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +  L  ++  P G+LR+     L + +L   L  F   YP+IQ+
Sbjct: 109 AYYERVLRLLADLDDAETSLSVAASLPRGRLRVDVPSPLARLILMPALPAFHARYPEIQL 168

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC IR    I   SLI R +  +    YAAP YL+    P    
Sbjct: 169 DMGVSDRRVDLIGENVDCVIR-GGTITDQSLIARHVGDLQAGVYAAPDYLQRLGTPTHPT 227

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+  +H  + F        +P  M+  +    V    G   ++    N+YL+     + 
Sbjct: 228 ELENTRHRCVGFMRWGSSTTVPYVMQRGDEAVRVH---GRHVVAADDGNAYLAA---GLA 281

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+  LP Y+      +  LV I +D    +  +   +P     + KL+ F +++ 
Sbjct: 282 GMGVLWLPVYMANAHVASGELVPIFQDWQLEAMPLSIAFPPNRHVSAKLRVFIDWVI 338


>gi|260462486|ref|ZP_05810693.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031682|gb|EEW32951.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 297

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 142/299 (47%), Gaps = 12/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D ++L  F  VA   SFT AA +L ++QS++S  I  LE  +GI+L  R  R +  T  G
Sbjct: 5   DLNQLTWFQAVAEERSFTRAAAKLGVAQSTLSHTIKQLEARMGIRLLTRTTRNVATTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +    ++E     L     KPSG +R+  +    ++++   LK+ L  YPDI 
Sbjct: 65  ERLLRTIAPRIGEIEDEIAALMAFREKPSGSVRLTLSDHALESVVWPKLKQVLSAYPDIG 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LILD+   +I  +  D  +RL + ++   +  R      + A  +P Y      P+  
Sbjct: 125 VELILDSTFRNIVEEGFDAGVRLGESVEKDMIAVRIGPDWRLVAVGSPDYFAAHGVPVHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L +H  I         +  + W    D      R+   L  N+  +++   V G GIA
Sbjct: 185 QDLVRHVCINMRQETAGGL--YAWEFEKDGQALRVRVDGQLTFNNTYAMIDAAVCGYGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFI-FLKARD 296
            +P+ IV+    +  LV+++ D  +P F  YF  YP   +N   L AF+  I  L+ RD
Sbjct: 243 YVPENIVERQIASGLLVQVL-DEWSPLFDGYFLYYPSRRQN---LPAFKVIIDALRHRD 297


>gi|167614745|ref|ZP_02383380.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 307

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 125/292 (42%), Gaps = 25/292 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA +  F+HAA QL+LS S ++R +  LE+ +G+KL  R  R   LTE G +  
Sbjct: 1   MRVFLKVAETHHFSHAANQLNLSPSLVTRYVGDLESHLGVKLLQRSTRKTVLTEVGVRYA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L   +      S   +G L +     +    L G   E+   +PD+ +++ 
Sbjct: 61  EGCRALLANLHEIESRATHESSAIAGDLHVVALDSITSPELAGLFAEYQSRHPDVSLRIT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             + ++D+     D  I     I S SL+ R L+   + A A+P YL     P    +L 
Sbjct: 121 QTDSEVDLLGGGFDVGIVADTMITSVSLVSRTLIHAPLVAVASPGYLLQAPPPARPADLA 180

Query: 188 KHNLITFGDLIPKCMEDFNWLAT--------VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +H +I            + W           +D PI         VN+     Q  + G 
Sbjct: 181 RHRIIGLA----AGARTYRWTGKNNAVDTTQIDTPI--------TVNNAPMQRQLVLAGG 228

Query: 240 GIALLPDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           GI LLP+Y+V ++     L R++ D  +     T+   YP      GK++AF
Sbjct: 229 GIGLLPEYLVANDLRIGTLTRLLGDYRIANDGVTISLVYPGREFLPGKVRAF 280


>gi|167576563|ref|ZP_02369437.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 307

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 125/292 (42%), Gaps = 25/292 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA +  F+HAA QL+LS S ++R +  LE+ +G+KL  R  R   LTE G +  
Sbjct: 1   MRVFLKVAETHHFSHAANQLNLSPSLVTRYVGDLESHLGVKLLQRSTRKTVLTEVGVRYA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L   +      S   +G L +     +    L G   E+   +PD+ +++ 
Sbjct: 61  EGCRALLANLHEIESRATHESSAIAGDLHVVALDSITSPELAGLFAEYQSRHPDVSLRIT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             + ++D+     D  I     I S SL+ R L+   + A A+P YL     P    +L 
Sbjct: 121 QTDSEVDLLGGGFDVGIVADTMITSVSLVSRTLIHAPLVAVASPGYLLQAPPPTRPADLA 180

Query: 188 KHNLITFGDLIPKCMEDFNWLAT--------VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +H +I            + W           +D PI         VN+     Q  + G 
Sbjct: 181 RHRIIGLA----AGARTYRWTGKNNAVDTTQIDTPI--------TVNNAPMQRQLVLAGG 228

Query: 240 GIALLPDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           GI LLP+Y+V ++     L R++ D  +     T+   YP      GK++AF
Sbjct: 229 GIGLLPEYLVANDLRIGTLTRLLGDYRIANDGVTISLVYPGREFLPGKVRAF 280


>gi|56476178|ref|YP_157767.1| LysR family transcriptional regulator [Aromatoleum aromaticum EbN1]
 gi|56312221|emb|CAI06866.1| putative transcription regulator protein, lysR family [Aromatoleum
           aromaticum EbN1]
          Length = 304

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 140/294 (47%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V  +GSF+ AA +L +S+S++S+ ++ LE   G +L  R  R L+LTE G
Sbjct: 3   DLNLMATFARVVEAGSFSEAARRLDVSRSAVSKAVAKLEKAFGARLLNRSTRALSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +    + +  + E  +  +     +P G L+++ ++  G   +   L +FL  YP++ 
Sbjct: 63  AAVAEHCARIVDEAEQAEQVVMSFHAEPRGILKVSASVAFGTLHVAPALADFLGRYPELA 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +++ +K +D++ +  D A+R+       SL+ R+L  +     A P Y +    P + 
Sbjct: 123 LDMMITDKLVDLAEEGYDLAVRVTGE-PPGSLVARRLAPVRRRICATPEYFRRRGVPQTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H+ +++        E   W  +  +  I  P    L ++   ++ Q  + G G+A
Sbjct: 182 EDLVHHHCLSYA----HSGEKGQWRFSGPEGEIAVPVKGPLHIDDDEALSQAVLSGLGVA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP +IV  +     L  ++ + +     VY  Y        K++A  +F   +
Sbjct: 238 LLPTFIVGGDLQQGRLQAVLSEYLPVQQHVYALYLPTRHLPAKVRALIDFFVAR 291


>gi|124267599|ref|YP_001021603.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124260374|gb|ABM95368.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 323

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 138/286 (48%), Gaps = 9/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A S SF  AA  L ++ S +S+ ++ LET++G++L +R  R ++LT+ G+     
Sbjct: 9   AFVRTAESRSFAQAARLLDVTPSGVSKSVARLETQLGLRLLHRTTRQVSLTDDGAVFFEH 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +    +  +  + +    PSG+LR++    LG+  +   L +FL   PD+ ++L L 
Sbjct: 69  CRRLLDDFDAARSLMSDRGAAPSGRLRVSVPSTLGKLFVVPRLPQFLAARPDVTLELDLS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ + +  +  D A+R+   +  SSL+ R L T  +   A+P YL++     ++ +L +H
Sbjct: 129 DRQVALVDERVDVAVRI-GTLVDSSLVARPLWTQQVVTIASPGYLQDSAALATLGDLARH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVD-RPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             ++F    P    +  W+   D R +   PR+  + ++   +++     G G+A +PDY
Sbjct: 188 RCLSF--RWPTTGRERPWMFRCDGRTVQLRPRV-YMMLDEGEAMVVAVRAGLGVAQVPDY 244

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     D    V ++  +  P   +   Y        + +AF +++
Sbjct: 245 MAADAIDRGEAVEVLAGIRPPPTPINAVYASQRNLPARTRAFVDWL 290


>gi|270262595|ref|ZP_06190866.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043279|gb|EFA16372.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 371

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 21/295 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D L +F  +A   SFTHAAE L + +   S  +  +E  +G++L +R  R + LTE G
Sbjct: 72  DLDSLAIFVRIAEMASFTHAAESLGIQKGRASNVVRRIEAAMGVRLLHRSTRTVQLTEDG 131

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +    E        S     G+LRI    +L +  +   L  F+  YP+IQ
Sbjct: 132 RAFYNRARALLADAEELNSMFASSKTPLRGRLRIDLPTELARTPIVPALPSFMATYPEIQ 191

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +D+  +  DCA+R+ + I   +L+ +K+  + M   A+P YLKN   P ++
Sbjct: 192 LEISSTDRRVDLIQEGIDCALRIGE-IVDETLVAQKMGALSMVNVASPAYLKNHGMPHTL 250

Query: 184 QELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL--SIMQYCVLG- 238
           ++L   +H +I +  ++      F W    + P G+   + +   S    S+  Y   G 
Sbjct: 251 EDLSAQEHRMIHYAPILGS--RPFGW----EYPKGDGYATLMLAGSISVNSVQTYHAAGL 304

Query: 239 -------SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
                  +G + L +YI  +N  LV I+ D+     TV F        + ++++F
Sbjct: 305 AGLGLIQAGRSSLIEYI--ENGELVEILPDLRPEPLTVSFVVAHRQNLSRRVRSF 357


>gi|323179530|gb|EFZ65097.1| hypothetical protein ECOK1180_1835 [Escherichia coli 1180]
          Length = 299

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+HAA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSHAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 67  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|300694445|ref|YP_003750418.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299076482|emb|CBJ35800.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 310

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 19/299 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF  AA++L +S  ++S  +  LE  + ++LF R  R + LTE G  L
Sbjct: 8   ELTAFIAIAEQRSFRAAAKKLGVSAPALSHAVKNLEASLNVRLFNRTTRSVALTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R        LE    E+  +  +P+G +RI+      + L++  L EFL  YPDI +++
Sbjct: 68  LRRVGPALADLEDGINEVASAGTRPAGSIRISAAEAGARPLVRHVLPEFLAAYPDIHVEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D + +DI  +  D  IR+   +    +           A A+P YL   + P + Q+L
Sbjct: 128 VVDTRLVDIVAEGFDAGIRVLSDVPQDMIAVEFGPAFRFAAVASPDYLSRHKPPKTPQDL 187

Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  I F    G L    +E     A++D  +  P    + + +   ++   + G GIA
Sbjct: 188 RQHRCIRFRFLSGALYRWELERRGSSASID--VDGP----MTLGNTNLMVDAALAGIGIA 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            +P+Y V ++     LV ++ D  +PS   +   YP        L+ F   +    R+W
Sbjct: 242 WVPEYHVVEHLAAGRLVHLLPD-WSPSLPGLCLYYPANRHPPAALRLFSQAV----REW 295


>gi|293396222|ref|ZP_06640502.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291421355|gb|EFE94604.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 317

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 14/194 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR GSFTHAA QL ++  ++S+ I  LET +GI+LF R +R + L+++G   +
Sbjct: 8   LPFFEAVARLGSFTHAARQLGVTPPAVSQNIQTLETRLGIRLFNRTSRSVRLSDEGKLFY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +    +++     ++    +PSG LRI         L+   L EF   YP+IQ++L 
Sbjct: 68  QSVAPAMSQIDVAAENIRALRSRPSGHLRITLPQLAASLLVMPFLTEFHARYPEIQLELF 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLI-------QRKLVTIHMHAYAAPHYLKNCREP 180
            D++  D+ +D+ D  IR+   +Q   +        QR +V       AAPHYL     P
Sbjct: 128 TDDRFADLVLDHFDAGIRMHAVLQKDMIAVPIDNGQQRVIV-------AAPHYLAQHGMP 180

Query: 181 LSIQELDKHNLITF 194
            + + L +HN + +
Sbjct: 181 TTPEALRQHNCLRY 194


>gi|222084825|ref|YP_002543354.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722273|gb|ACM25429.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 305

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 12/262 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT  
Sbjct: 7   FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFALKVKLFERNPRGYVLTGM 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  + E  + +L   S    G +RI+    +        L EF   YP+I
Sbjct: 67  GQRFIDTAERMEQETERLRADLTVGSAAQRGVVRISAPEGISNFFFTTMLPEFTARYPNI 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+   + + +S   AD  + L  P ++      KL   H+  Y +  YL N     S
Sbjct: 127 SLELVTIQQIMSLSRKEADIVVVLDPP-KAGPYFTEKLTDYHLQVYGSRDYLANHPPVES 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLGS 239
             +L  H  + +       +ED  +   +D  +G+  PRI    Q +S  + +     G 
Sbjct: 186 RNDLPDHAFVGY-------IEDMIFAPGLDY-LGDIHPRIKPQFQSSSIFAQLTATKNGL 237

Query: 240 GIALLPDYIVKDNPNLVRIMED 261
           G+ +LP +I   +P+L  ++ D
Sbjct: 238 GLCVLPYFIACRHPDLQMVLPD 259


>gi|209521044|ref|ZP_03269777.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209498538|gb|EDZ98660.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 302

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 12/272 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   A+S SFT AA+QL L++S++ + I+ LE  +G KLF+R  R + LT  G      
Sbjct: 12  IFVAAAKSRSFTDAADQLGLTKSAVGKSIAKLEERLGAKLFHRTTRSIALTADGEAYFAA 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S    ++   +  L     +P G+LRI      G+ +L   L +    +PD+Q  +   
Sbjct: 72  CSAALDEISAAEAALGPGQQRPVGRLRIDMPAAFGRRVLVPILLKIGREHPDLQFTMTFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID   +  D  +R  +   SS L+ R+L +  M   AAP YLK    P ++ +L  H
Sbjct: 132 DHIIDPIEEGVDLVVRFGELQSSSGLVARRLTSQRMVIAAAPEYLKRKGTPKTVDDLQNH 191

Query: 190 NLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + +       +  +  +W    D   R I  P     Q++   +I+   + G GI  +P 
Sbjct: 192 SCVVGY----RRGQPLSWRVNTDGESRRISPP--PTHQISDGDTIIDAALSGLGICQMPM 245

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
            +++       LV +++ V      V+  +P+
Sbjct: 246 SLLRPGLKGGTLVSVLDKVSKDLIDVHVVWPK 277


>gi|221065696|ref|ZP_03541801.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710719|gb|EED66087.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 303

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 132/266 (49%), Gaps = 14/266 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ ++ +F  V   GS + AA QL ++ S++S+ I  LE E G+ L +R  R LTLT+ G
Sbjct: 3   DFRRMAIFAAVVERGSMSAAARQLDMTPSAVSQHIRQLEQEAGLTLLHRSTRQLTLTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +   + +       + EL     +PSG+LR+A      Q+     L ++L ++P+++
Sbjct: 63  QRFYIQCAAMCEAASRARAELAAEHQRPSGELRLAAPAGFTQHAAPA-LGKWLAMHPELR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK----NCRE 179
           ++L++D+  ID+     D A+R    +Q SS + R L        A+PH++K      R 
Sbjct: 122 LRLLMDDAPIDLIQARVDLALRFGN-LQDSSWVARHLGRSATVLCASPHWIKAHGSTPRH 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLG 238
           P  + +L    +    D       DF W           ++  L V+++ S + Q+C  G
Sbjct: 181 PGELAQLPWLEMSRSDD----AQADFLWRQQGTNQEFRLQVRPLMVSNHRSAVQQFCEAG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMED 261
            G+ALL  + V    ++ +LVR++ D
Sbjct: 237 LGLALLSAHDVAASLESGSLVRLLPD 262


>gi|170700497|ref|ZP_02891501.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134578|gb|EDT02902.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 319

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G    
Sbjct: 11  LHVFMSVATAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQHYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126
           + T   Y ++   +  L+E   +P G LR+ T + L ++L +   L  F   YP +++++
Sbjct: 71  QQTEPAYRQVMQARDALKEVRSEPGGLLRV-TALPLARSLVITPILAAFRARYPKVRLEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +N+ +DI+ D  D  IRL   +Q   +  R    +     A+P YL     P SI EL
Sbjct: 130 RYENELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPGYLARHGMPASIAEL 189

Query: 187 DKHNLITF 194
           ++H  I F
Sbjct: 190 ERHACIRF 197


>gi|167585548|ref|ZP_02377936.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 324

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAADTLTMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q  + KPSG LR+     LG+ L+   L  F   YPDI + L 
Sbjct: 67  EHCVKIIAEIAEADASFQTGNRKPSGVLRVHMPNALGRRLVIPALPAFRQRYPDITLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   +P  I +L 
Sbjct: 127 LSDRPVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLKRHGDPHEIADLA 185

Query: 188 KHNLITF 194
           +H  + F
Sbjct: 186 EHVAVNF 192


>gi|83749827|ref|ZP_00946798.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207743205|ref|YP_002259597.1| hypothetical protein RSIPO_01372 [Ralstonia solanacearum IPO1609]
 gi|83723507|gb|EAP70714.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206594602|emb|CAQ61529.1| hypothetical protein RSIPO_01372 [Ralstonia solanacearum IPO1609]
          Length = 300

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 20/291 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS T AA+ L +S++ ++R ++ +ET  G +L +R  R + LT  G      
Sbjct: 9   VFVAIVDRGSLTAAADALDMSRAMVTRYLAQMETWSGARLLHRTTRRIGLTPAGEATLAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++        +     +  P G LR+A    L Q +L   +  +L  YPD  I L++D
Sbjct: 69  CRQMLEIAGQMPVSAGPETDTPRGLLRVACAQVLAQQVLGEAVTAYLRRYPDTAIDLVVD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +++  +  D A+R+   +   +LI R L T      AAP YL     P  +++L  H
Sbjct: 129 NRTVNLVEERIDLAVRITNDLD-PNLIARPLGTCESVVCAAPAYLAAHGTPRRVEDLAVH 187

Query: 190 NLIT---FGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
           N +T   FG  +        W  T  R  GEP +      L  N  ++++     G+GI 
Sbjct: 188 NCLTYSYFGKSL--------WRFTEAR-TGEPAVVPVGGNLSANESMALLAAVKAGAGIG 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + P +       +  LVR++ D +  +  ++  Y    +    L+A  +F+
Sbjct: 239 MQPAFAAAPLIASGQLVRLLPDHVPQALGIHGVYSSRRQMPAALRAMLDFL 289


>gi|325293833|ref|YP_004279697.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325061686|gb|ADY65377.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 299

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 141/299 (47%), Gaps = 21/299 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG--- 63
           ++ VF   A  GSF+ A  +L LS S++S+ ++ +E  +G +L  R  R +TLT +G   
Sbjct: 7   EMEVFVAAAELGSFSAAGRRLKLSPSAVSKLVTRIEDRLGTRLLARSTRVVTLTPEGEIY 66

Query: 64  -SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            S+  R+ +++    +T QI      V P G LR+  T+  G+  L     EFL LYP+I
Sbjct: 67  LSRARRILADIA---DTEQIVAGGGKVVPRGLLRVNATLGFGERYLLPLAPEFLSLYPEI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L +  I +  +  D AIR    +  SSL  RKL  +     A+P Y++    P  
Sbjct: 124 ELDISLTDGVISLIEERTDIAIR-SGGMADSSLKARKLKEVRRIIVASPAYIEKHGMPEK 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLG 238
            Q+L +HN I+F           N     D    E    P      VNS +++ + C+ G
Sbjct: 183 PQDLAQHNCISF-----NFSRSLNEWPFRDPGTTEVYRLPVTGNASVNSGMAMRRLCLTG 237

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRNFIFLK 293
            G+  + ++ V+ +     LV ++ED       V +  Y        +++AF +F+  K
Sbjct: 238 LGLGRVGEFHVEPDIEAGLLVPVLEDYNPGDMEVIHAVYAGHDHLAARVRAFIDFVAAK 296


>gi|153010203|ref|YP_001371417.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562091|gb|ABS15588.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 303

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 12/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT A+  L++ +++IS  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRAFLRVVETGNFTRASASLNMPKATISNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L      L  +   P G+LR+     +   ++   L EF   YPDIQI L 
Sbjct: 67  ERAARLLADLAELDGSLSSAQTLPKGRLRVEMASAVANLIIIPALIEFHQRYPDIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D   +  DCAIR+ + +   SLI R++  +H  A A+  YL  C  PL   +L 
Sbjct: 127 VSDRPVDYVAENVDCAIRIGE-LADQSLIARRIGDMHFIACASAEYLDRCSTPLHPSDLG 185

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + N    G   P   +   +     T +  + G   ++  +  +YL+  +    G G+  
Sbjct: 186 R-NCTVVGYFRPSTGQQMPFRFKKGTEEIEVNGRYVVAANESTTYLAAAR---AGLGVVQ 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P ++VK   DN  L  ++++       +Y  YP     + +L+ F +++
Sbjct: 242 APLFMVKDDIDNGTLRPVLQEWEIEPMPIYLVYPPNRHLSNRLRVFADWV 291


>gi|78066354|ref|YP_369123.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967099|gb|ABB08479.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 321

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 129/293 (44%), Gaps = 16/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R + LT+ G + 
Sbjct: 12  SIELFCLAAELGSFTLAANAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRY 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +   +L   + E       P+G LRI+     G   +   L  F   YPD++++ 
Sbjct: 72  FEQCRDALSQLVDAEREATGQQATPAGLLRISMPTPYGHYRVLPLLPAFRERYPDVRVET 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L N++ID + +  D AIR R P   S+L+ R L    +   A P YLK    P  I +L
Sbjct: 132 HLSNRNIDFAEEGYDLAIRGRAPAD-SNLVARTLEDAELVIVATPGYLKRAGTPTVIDDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV------LGSG 240
             H  I F   +P       WL +     G   I      SY +   Y         G+G
Sbjct: 191 HAHECIQFE--LPSSGRQIPWLFS----DGSEEIDVATTGSYGTSGDYLAGVTLARSGAG 244

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     +IV+ +     LV ++  +   S      YP A   + +++ F +F+
Sbjct: 245 LFQAYRFIVEQDLRAGTLVEVLPGLGGRSRPFMLLYPHARFLSSRVRVFVDFL 297


>gi|320183471|gb|EFW58320.1| LysR family transcriptional regulator YhjC [Shigella flexneri CDC
           796-83]
          Length = 323

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + +NLL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+        S L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGSMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|300024549|ref|YP_003757160.1| LysR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526370|gb|ADJ24839.1| transcriptional regulator, LysR family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 305

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 142/290 (48%), Gaps = 11/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V  SGS+  AA +L+L++S++S+ +  LE  +G +L  R  R +T TE G  
Sbjct: 5   EAMNAFAKVVASGSYAEAARRLNLTRSAVSKAVMELEQALGARLLDRTTRRVTPTEAGLA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  +++ T+ ++     +P G L++   +  G   L   + +F++ Y D++++
Sbjct: 65  YYERCLAILAQVDETEAQISRLHDEPKGVLKVNAPMSFGTLYLGDAVADFMIRYSDLKVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ID   +  D  +R+   +  SSLI R++    +   A+P YLK    P S  +
Sbjct: 125 LTLTDRFIDPLEEGVDVTVRIGAMVD-SSLIARRISPARIVLVASPDYLKAHGTPQSPSD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  +++G +    M+ ++ L    +P+     +CL  N+   + +  + G GIALLP
Sbjct: 184 LAEHRCLSYGHMT--SMQRWH-LTDKGKPVSVAIGACLSSNNGDVLREAALKGIGIALLP 240

Query: 246 DYIVKDNPNLVRIMEDVITPS-----FTVYFCYPEALKNTGKLKAFRNFI 290
            +I   +    R+   ++ P       T++  Y        K + F +F+
Sbjct: 241 TFIAGKDIAAKRLQ--IVLPENQPDDLTIHALYAPNRYLAAKTRVFIDFL 288


>gi|253997145|ref|YP_003049209.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253983824|gb|ACT48682.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8]
          Length = 294

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 139/293 (47%), Gaps = 21/293 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF      GSF+ AAE   ++ + +S+ I+ LE  +G  L  R  R   LTE G   +
Sbjct: 7   MEVFVSAVELGSFSAAAEVFKITPAMVSKHITALEQRLGATLLARTTRKQNLTEIGKNYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++   +   +     P G L++  +I  G   L   + ++L  YP++ I L 
Sbjct: 67  DNCKKILGQINDAEAGAEAMGSNPRGHLKVNASIWFGSLTLTPLVCDYLNQYPEVNISLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D AIR+ + ++ S+LI RKL    +   A+P+YL     P +  EL 
Sbjct: 127 LTDRYVDLVEEGFDVAIRIGE-LKDSTLIARKLSMFEVAICASPNYLAKAGTPTTPDELI 185

Query: 188 KHNLITFGDLIPKCMEDFNW-----LATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240
           KH          +C+   NW        + + +G    ++   + ++  +++   V G G
Sbjct: 186 KH----------QCLGFTNWHHQGGWQLIQKQLGAKFEQVPRFESDNGQALLTAAVKGIG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I ++P  +++   ++ +LV +M D + P+  ++  YP   +   KL +F  F+
Sbjct: 236 IIMMPKELMRKDIESGHLVELMHDYLPPARPIHAVYPSERQLAPKLTSFVEFL 288


>gi|332305996|ref|YP_004433847.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173325|gb|AEE22579.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 294

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 143/306 (46%), Gaps = 21/306 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSF ++ +  F  VA +  F+ AA +L+++ S ISR+++ LE E+G+ L  R  R + LT
Sbjct: 1   MSFSFNGIIEFVAVAETQGFSAAARKLNVNVSHISRKVAALEKELGVSLLARSTRTVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G        E+ + L+     + +  V+ SG L+++   +  +  +   L EF  L+P
Sbjct: 61  DAGQAYFSRCQELVYGLQEANETVFDKQVELSGTLKVSAAGEFAEQHIAPLLVEFAQLHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I++  +++ ++   D  D +IR   P++ SSLI RKL    + A A+  YL     P
Sbjct: 121 KLTIEMDFNSQMVNFIDDTFDFSIRY-GPMKDSSLIARKLTNRSLVAAASERYLAENGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN--W-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
                L +H          KC+   N  W     +R I     +  + NS  S++  C  
Sbjct: 180 TQPSHLTEH----------KCLMTNNSTWFFKDTNRAIEVKLDARWRSNSVRSVVLACER 229

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL-- 292
           G G+A LP     D   N ++V ++E         +  Y  A +N    KA    IFL  
Sbjct: 230 GLGVAYLPRSSFGDALNNGSVVPVLEPYWNREIATWIVY--ANRNYLPAKARLAIIFLLD 287

Query: 293 KARDWK 298
           K +DW+
Sbjct: 288 KFKDWQ 293


>gi|190572610|ref|YP_001970455.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190010532|emb|CAQ44141.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 293

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 136/292 (46%), Gaps = 23/292 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  V     F+ AA+ L +S + ++RQ++ LE  +  +L +R  R ++ T  G+ 
Sbjct: 5   EAMRVFVAVVERNGFSAAAQALDMSTAGVTRQVAALEKRLSTRLLHRTTRRVSPTSAGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  + +  +  +   +++PSG LRI   +  G   L   L  +   +P +++ 
Sbjct: 65  YYAQCVRLLAEFDALEASIGAQALEPSGTLRINAPVSWGIARLGPLLASYRQRFPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L ++ +D+  +  D AIR+ R+P    +LI R+L    +   AAP YL     P + Q
Sbjct: 125 LALSDRLVDMVEEGYDVAIRITREP--GPTLIARRLGESRVSLCAAPAYLAAHGTPQTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT----VDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           EL  H           C+    W A     +  P GE ++   S L  N+   + +  + 
Sbjct: 183 ELQAH----------ACLSYSYWAAGDHWPLQGPGGEVKVAVSSLLHANNGDVLREAAIA 232

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G G+ L PD++++D   +  LVR++ +       ++  Y        K+++F
Sbjct: 233 GMGVILQPDFLLEDALADGRLVRVLPEWEAAPIGIFAVYTSRSHLAPKVRSF 284


>gi|218767562|ref|YP_002342074.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis Z2491]
 gi|121051570|emb|CAM07868.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis Z2491]
          Length = 299

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 124/253 (49%), Gaps = 7/253 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S +EL  H  + F +  P  +   N  A +D      +IS     S   I++  C+ G 
Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDN 252
           GIA L D++V ++
Sbjct: 235 GIACLSDFLVDND 247


>gi|307314151|ref|ZP_07593762.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306899137|gb|EFN29777.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 296

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 137/278 (49%), Gaps = 15/278 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVA+  SFT AA +L +S S++S+ I  LE  +G++L  R  R +  TE G
Sbjct: 3   NFNDLAAFAVVAKERSFTRAAAKLRVSPSALSQTIRNLEERLGLRLLTRTTRSVASTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +  + ++E     L E   KP+G +RI        +LLQ  LK FL  YPDIQ
Sbjct: 63  ERLLRTIAPRFDEIEAELAALSELRDKPAGTVRITAGEHPAISLLQPALKRFLPDYPDIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+D    DI  +  D  +R+ + +    +  R    + M   A+P Y +    P + 
Sbjct: 123 VEIIIDYGLTDIVAEGYDAGVRMGEQVAKDMIAVRIGPDMRMALVASPGYFERHPLPKTP 182

Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           Q+L  HN I     T+G + P  +E       V R  G+     L  NS    +   + G
Sbjct: 183 QDLTDHNCINIRLPTYGGVFPWGLEKDERDVKV-RGDGQ-----LVFNSLAMRLASALDG 236

Query: 239 SGIALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCY 273
            G+A +P D+++    +  LVR++E+   P F  Y  Y
Sbjct: 237 LGVAYMPEDHVLPYLADGRLVRVLEE-WCPYFPGYHLY 273


>gi|153011562|ref|YP_001372776.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151563450|gb|ABS16947.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 297

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 139/287 (48%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE G   
Sbjct: 6   RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +PDI + +
Sbjct: 66  YHRAVEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPDIVLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P   ++L
Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSILCGAPELISRVGKPERPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I   D   +   ++++  T    +  P    ++VNS ++     + G G  +LP 
Sbjct: 185 ADRPCII--DTNARSRNNWHFRNTDGSMMTVPVNGPIEVNSPVATKNAALAGLGFCMLPA 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +I ++      LV  +++ I     +Y  YP       K++A  +F+
Sbjct: 243 FIAEEEIERGRLVACLDEFIVKDGGIYAVYPHRRYLPAKIRALVDFL 289


>gi|332530401|ref|ZP_08406346.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040212|gb|EGI76593.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 306

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 137/296 (46%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  + SFT AA+ LH+S++++++ +  LE  + +KL  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETRSFTQAAQTLHMSKTTVTQLVQQLEARLRVKLLNRTTRQVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +  L  ++  P G+LR+     L + +L     +F   YP+IQ+
Sbjct: 64  AYYERVVRLLADLQDAETSLSSAAAAPHGRLRVDVPSPLARLILVPAFADFHARYPEIQV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +D+  +  DC +R  +P    SLI R +  + +  YAAP YL     P+   
Sbjct: 124 HLGVSDRVVDLIDENVDCVVRGGEP-GDPSLIARHVGDLAIRLYAAPAYLARAGTPVHPL 182

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           +L+   H ++ F     G ++P  +        V    G   ++    N+YL+     ++
Sbjct: 183 DLETAPHQIVGFLWSSTGRILPCTLRRGEDSVEVR---GRYALAVDDGNAYLAA---GLV 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G   LP Y+     +   L  + ED       +Y  YP       +L+ F +++
Sbjct: 237 GLGALWLPHYLAAAHVERGELRPLFEDWSIAPMPLYLAYPPKRHVGARLRVFIDWV 292


>gi|296137223|ref|YP_003644465.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
 gi|295797345|gb|ADG32135.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
          Length = 301

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 133/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  GS T AA    ++ + I R+I  LE  +G+KL  R  R ++LT++GS  
Sbjct: 6   QLETFVAVATKGSLTAAAHAEGVAPAIIGRRIDALEARLGVKLLLRTTRRISLTDEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L+  +  +    VK SG LRI      G+  +   +  FL  +P++ + L
Sbjct: 66  LEDCQRLLAELQNAEASVSAGGVKASGHLRITAPAGFGRRHIAPLIPGFLDQHPEVSLSL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+R+   +  SSL+  +L        AAP YL+    P +  +L
Sbjct: 126 DLTDRLVDLVNEGYDCAVRV-GDLADSSLVSLRLADNRRVCVAAPSYLQRHGTPATPSDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H  + +  +     +   W+   +  I   R++  +       + Q+C+ G GIA   
Sbjct: 185 ARHQCLAYSSV---SSQPRGWMFQAEGEILHVRVAGRMDCTDGAVLHQWCLEGRGIAWRS 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V    +   LV ++ED   P   ++  + +      +L+ + +++
Sbjct: 242 LWEVGASLEQGKLVALLEDYAAPPNGIFAVFTQRKHQPLRLRLWLDYL 289


>gi|115353065|ref|YP_774904.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283053|gb|ABI88570.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 320

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 14/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + +
Sbjct: 66  YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVIVDM 125

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +
Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIAD 185

Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  HN +   +   ++   + D    + V+          L VN    +    + G+GIA
Sbjct: 186 LAHHNYLRRDSNSTMLDSLVIDAAAASRVNLK------GNLIVNHLEGLRAAVLAGAGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LL   +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 240 LLGTEVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|301629584|ref|XP_002943918.1| PREDICTED: uncharacterized HTH-type transcriptional regulator
           ycaN-like [Xenopus (Silurana) tropicalis]
          Length = 435

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 136/285 (47%), Gaps = 16/285 (5%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MSFD      + V   V  SGSF  AA+ L ++ S +SR IS LE  +GI+LF R  R +
Sbjct: 1   MSFDPGLAGGMGVLAAVVDSGSFARAADSLEMTPSGVSRAISRLEKRLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT++G + ++  + +   LE       +S++   G+LR+       + +L   L EF+ 
Sbjct: 61  QLTDEGRRFYQEIAPLLAGLEEAASSAADSALTVRGRLRVNIDPYFSRLVLGPVLGEFMS 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP +Q+ L   ++  D+  D  D AIR   P QSSSLI RKL+ + +   A+P YL+  
Sbjct: 121 QYPQLQLDLHTRDQLGDLVADGFDLAIRFGIP-QSSSLIARKLMEVRVLTLASPDYLERH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIM 232
             P   ++L+  +H  I F D   +    F W     RP     ++    L VN   ++ 
Sbjct: 180 GRPTHPKDLEDGQHVCIDFRD--SQTGRPFGW--EFHRPGEHVNVATSGRLVVNDAGTLY 235

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
             C  G  +A + D  +    ++  LV +  D     F +Y  YP
Sbjct: 236 SVCEHGHAVAQMLDLGLAPALESGALVELFPDWPDERFPLYAFYP 280


>gi|290512807|ref|ZP_06552172.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289774690|gb|EFD82693.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 301

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L+ F  V  +GSFT AA+ L +  +++S+ I  LE  +G+ L  R  R +T+T +G 
Sbjct: 4   FSALKAFTRVVEAGSFTRAADSLDMPNATLSKTIKQLEAHLGVSLLQRTTRRITVTPEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +   LE        +  KP G LRIA       ++L   L +F+  +PDI+I
Sbjct: 64  EYYEKARCLLEDLEEIDASFNTAHNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPDIRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +K  D+     DCAIR   P+  S+LI RK+    +   A P YL+ C  P S  
Sbjct: 124 DLQVADKPADLISGNIDCAIR-GGPMDDSTLIARKIGEATLVTCATPGYLQRCGTPASPD 182

Query: 185 EL-DKHNLITF 194
           EL   H LI++
Sbjct: 183 ELHHGHQLISY 193


>gi|160897459|ref|YP_001563041.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363043|gb|ABX34656.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 297

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 143/297 (48%), Gaps = 15/297 (5%)

Query: 1   MSFDWDK---LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D D    L  F   A   SF  A   L +S S++ + ++ LE ++G++LF R  R +
Sbjct: 1   MAIDMDSFSGLESFVRAADLLSFAEAGRALGISASAVGKNVARLEQQLGLRLFQRTTRQV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT++G+  H     +  +L   +  +Q ++  P G+LR++    +G   L   L EF +
Sbjct: 61  RLTQEGALFHERCRRILDELHDARATMQAAAEAPRGRLRVSLPT-IGYRFLLPVLPEFQV 119

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP++ + L  ++  +D+     D  IR    +  S L+ R+L         +P YL   
Sbjct: 120 LYPEVDLDLDFNDHLVDVVEAGLDVVIR-SGELADSRLVARRLGPFRFILAGSPDYLAAR 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCV 236
             P S  EL +H+ + +  L    +E+  W+     P   P + + L  N+  +++   V
Sbjct: 179 GIPQSPAELAQHSCLRYRFLSSGKLEE--WVL----PGMPPHLPAALVCNNMEAMLGAAV 232

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+A +PD++ +D      L R++ + +T +      +  + + + K++AF +F+
Sbjct: 233 AGMGLAYMPDFLARDALGRGELQRVLAEDLTHTGQFSALWASSRQLSPKVRAFVDFV 289


>gi|226952935|ref|ZP_03823399.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|294650511|ref|ZP_06727870.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226836256|gb|EEH68639.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|292823654|gb|EFF82498.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 306

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 145/295 (49%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE ++G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEEQLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S +P G ++++  +D+ QN +   L  FL  YP
Sbjct: 61  DIGMDVYRHAQVMMNAAQAAHDVVNHLSSEPRGVIKVSVPVDIAQNQMAKILPTFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++++Q+++ N+ +D+  +  D A+R+R  + +  +L+ R+  TI    +A+  YL     
Sbjct: 121 EVRVQMLVSNRRVDVINEGIDLALRVRSNLDEDPNLVLRQFETIEQRLFASQAYLNEFGH 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLG 238
             + ++L  H +I+  +     ++    L+  +    + +++ + + S L ++ +     
Sbjct: 181 VTTPEQLTDHRIISMSE---DHLDQQFLLSGPNNIQKKIKVNPVIMGSNLLMLTELASQN 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLPD I +   ++  LVR++ +   P    +  YP      G L A R FI
Sbjct: 238 CGIALLPDSIAQNFVESGQLVRVLPEWTAPHGIFHAVYP---SRRGLLPAVRVFI 289


>gi|241554253|ref|YP_002979466.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863559|gb|ACS61221.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 297

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 15/292 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + ++L  F  V  +GSFT AAE+L ++++ +S+Q++ LE E+   L  R  R +  TE
Sbjct: 3   AVNLNRLAYFAAVVDTGSFTKAAERLAITKTVVSQQVARLEAELKTSLLLRTTRRVEPTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     ++ + E    E+  ++ +P+G LRIA   D G + +      F+  YP 
Sbjct: 63  AGKLLYARCVLIFREAEDAVDEITRANAEPTGMLRIAAPNDYGASTIAPIAASFIRKYPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +++L+L +  +D+  +  D +IR+   +  SS   R++ +      A+P +       L
Sbjct: 123 CRVELLLADTKMDLLANQIDLSIRVGW-LDDSSHQARRIGSFRQFLVASPSFSAT----L 177

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           S+   +      F  +L  K  E   W       DR     + S L  NS  +++   + 
Sbjct: 178 SLNSPEDAAGQPFIANLALK--EPVTWRFIQGDFDRRTVRMQQS-LMSNSTPAVLAATLA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+GI++LPD++     D   L+R++ D   P+  +Y  YP A   T K+ AF
Sbjct: 235 GAGISVLPDFLAGEHIDAGRLIRLLPDWSLPAGGIYVVYPAARFRTPKVTAF 286


>gi|149922891|ref|ZP_01911313.1| Transcriptional regulator [Plesiocystis pacifica SIR-1]
 gi|149816279|gb|EDM75784.1| Transcriptional regulator [Plesiocystis pacifica SIR-1]
          Length = 309

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 132/280 (47%), Gaps = 7/280 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V R  SFT A + + L  S++SR+++ LE  +G KL +R  R + LT+ G   +  
Sbjct: 13  VFTEVVRQSSFTRAGKVVGLPASAVSRRVARLEAALGFKLLHRTTRSVGLTDAGRVYYER 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           T+ + H +      +QE    P G LR+    D G  ++   +  F+  +P++++++I  
Sbjct: 73  TAHIAHDVLDAARAVQEYLDTPKGLLRVTAPPDDG-GVIWAMISGFVRDHPEVELEIIHT 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +D+     D A+R   P  S++L  R+LV       A+P YL+    P   +EL +H
Sbjct: 132 LEYVDLIEAGVDVALRGGSPPDSTALTARRLVDSRFVLVASPRYLERRGTPTRPEELAEH 191

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + +     +P     F+ L   D P+     + ++ NS  +  +  + G GIA + +   
Sbjct: 192 DCVAMDTWVPNA---FSSLMGPDGPVSVDFRNRVRSNSQETARKAALDGFGIAPMVEMTC 248

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
               ++  LV ++   +    T +  YP A   +   +AF
Sbjct: 249 WRQLESGALVEVLPGALPWPATFWAVYPVARSKSAATRAF 288


>gi|83646550|ref|YP_434985.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634593|gb|ABC30560.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 296

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 1/186 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VAR+ SF+ AAE L LS +++SR+I  LE E GI LF R  R + LTE   +    
Sbjct: 12  LFVEVARTRSFSRAAENLGLSTATLSRRIRALERESGISLFTRTTRRVELTEAARRYFER 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +  + Q  L E + +P G LR++  +DLG + +   L EF   YP I  ++ L 
Sbjct: 72  CERLVDEAFSAQEALFEEAKRPQGTLRLSMPVDLGVHYIAPLLPEFARRYPGIDFEIDLS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            +  D++ +  D AIRL   ++  +L+ R++  I    +A+P YL+    P   ++L  H
Sbjct: 132 PQHRDLASEQIDIAIRL-GVVKDQNLVSRRIGWIEQGLFASPTYLQRQPAPSHPEQLSDH 190

Query: 190 NLITFG 195
           + I  G
Sbjct: 191 DCIIIG 196


>gi|290475772|ref|YP_003468661.1| putative transcriptional regulator [Xenorhabdus bovienii SS-2004]
 gi|289175094|emb|CBJ81897.1| putative transcriptional regulator (LysR family) [Xenorhabdus
           bovienii SS-2004]
          Length = 311

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 125/251 (49%), Gaps = 11/251 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  WD +RVF  +AR+G+ + AA+ L +  +++SR+I  LET  G+ LF RH  G  LTE
Sbjct: 8   SLVWDDIRVFLAIARTGTLSRAADVLKIGIATVSRKIERLETTFGMPLFLRHQAGYRLTE 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +     +  +E  ++ +  SGK+R+ATT     +L+  +L      YPD
Sbjct: 68  DGKELLEKAKAMEIAASSFLLE-ADTRIAISGKVRLATTETFASDLVIPSLPTLQKNYPD 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D   +D+    AD A+R+ +P +   +  R+L  +    Y    YL  C   +
Sbjct: 127 LTLEITTDIHTVDLHRRDADLALRIVRP-ERGHVTVRQLGKLGFGLYGNKDYLATCSPDI 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              + +K   I + +     +  F W       RP+    ++   +N+ L+ ++    G 
Sbjct: 186 LRGKYEKARFIGWAETY-SYLPSFRWTEKNLKSRPLS---VATTSLNAQLAAVKA---GL 238

Query: 240 GIALLPDYIVK 250
           G+A+LP +IV+
Sbjct: 239 GLAVLPHFIVQ 249


>gi|212637409|ref|YP_002313934.1| helix-turn-helix domain-containing protein [Shewanella
           piezotolerans WP3]
 gi|212558893|gb|ACJ31347.1| Helix-turn-helix, Fis-type [Shewanella piezotolerans WP3]
          Length = 310

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 138/292 (47%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L ++++++SR+I+ LE + G++L +R  R L LTE 
Sbjct: 1   MDLNRVQMFAQVVEQGSFTKAAKALGITKATVSRKIAELEADAGVQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  +     +  +L+  + +L  S    +G L+I   I+LGQ      L  FL  YP I
Sbjct: 61  GANYYNRVHHILSELQNAEDQLSASQQTITGHLKIICPIELGQLYFGQILARFLNAYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I   L N+ +D+  +  D   ++ +  ++ +L    L+       A+P YL     P  
Sbjct: 121 TIDAELTNRKVDVIGEGVDFLFQITEK-RNEALQTYALLNTPKVLMASPKYLAKHGTPQI 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  I      P     ++          EP+ S L+ N+   + +  + G GIA
Sbjct: 180 PEDLSQHQCIRLS--TPYVDNSWSLFNGEKWVTFEPK-SRLETNNITLVREAAIEGLGIA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +P  I     +N +LV +++D       +    P+ +    K + F  F++
Sbjct: 237 TVPMIIASEAIENGSLVTVLQDYPMKQNLITISMPKRVYLPRKYRVFTEFLY 288


>gi|168261960|ref|ZP_02683933.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205349216|gb|EDZ35847.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 303

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 144/296 (48%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ G   
Sbjct: 6   RMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   + D++I+ 
Sbjct: 66  YQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHSDLRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S 
Sbjct: 126 MSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVSS 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            E          + +P  +    W  TV    G+       +   + V+S  S+M + + 
Sbjct: 180 LESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFALA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 235 GSGVALLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 290


>gi|329890694|ref|ZP_08269037.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328845995|gb|EGF95559.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 295

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 139/293 (47%), Gaps = 19/293 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG- 63
           WD +  F  VA   SF+ AA +L LS S++SR+I+ LE  +  +L +R  R + LT+ G 
Sbjct: 4   WDGIDEFTAVAEQASFSAAARRLSLSTSAVSREIARLEDRLQTRLLHRTTRRVELTDAGR 63

Query: 64  ---SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
              S+  R+  E    L   Q + Q     P G LR+  ++  G+  +   +  F    P
Sbjct: 64  DFLSRCRRLIDERDEALAAVQPDDQ----APRGLLRMTCSVSYGERFIAPAVNAFARQNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I+L LDN+  D+  D  D A+R    +  S L+ R+L +  +   A+P YL     P
Sbjct: 120 ELRIELDLDNRLRDLVGDGYDLAVRFGH-LTHSRLMARRLASRRLILCASPDYLARRGAP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + E+  H+ +       +  E    ++   RP G  R  C   NS  +++   + G G
Sbjct: 179 RDLSEIPSHDGLIGSAEHWRFTEAGREVSL--RPSG--RWRC---NSGAAVLDAALQGLG 231

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  LPD+ V +   +  LV ++++   P   V+  +P       K++A  +++
Sbjct: 232 LCQLPDFYVAEGLASGALVSLLDEARPPDEGVWAVHPHPRHVPPKVRAMIDWL 284


>gi|269104466|ref|ZP_06157162.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161106|gb|EEZ39603.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 302

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 109/200 (54%), Gaps = 3/200 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  V   GSF+   + L+++ SSI+R I  LE E+ + LF+R  R LTLT++G   +
Sbjct: 5   IKIFLKVVEVGSFSKTGQILNMAPSSIARNIDQLEKELCVTLFHRTTRQLTLTDEGQDFY 64

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +E+ H  +    + ++ +  P G +RI+     G+  +   L +FL  YP++++++ 
Sbjct: 65  QGATELIHNADALFNQTKKQNQHPQGTIRISVFESFGRQWISPLLPKFLAQYPEVKVEIE 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QEL 186
           L+N+ +DI+ +  D  IR+ +P   S L  R L+       A+P YL N  EPL+   +L
Sbjct: 125 LENRMVDINSENIDLGIRIGRP-ADSGLHARMLLPNQTWLCASPTYLANS-EPLNCPHDL 182

Query: 187 DKHNLITFGDLIPKCMEDFN 206
           + HN +   +   K    FN
Sbjct: 183 ENHNCLLLNNDRQKVYWYFN 202


>gi|255745467|ref|ZP_05419415.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262151281|ref|ZP_06028416.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|255736542|gb|EET91939.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262030897|gb|EEY49526.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
          Length = 253

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 125/254 (49%), Gaps = 9/254 (3%)

Query: 41  LETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATT 100
           +E  + ++L  RHAR LTLTE G + ++  S +  +L +   E+ +     SG++RI+  
Sbjct: 1   MEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAP 60

Query: 101 IDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160
            +L + ++      F+  YPDI I+L++ N+  D+     D   R+  P + SSLI RK+
Sbjct: 61  SNLTKRMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKI 119

Query: 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI 220
             +     A+P YL +  +P   +EL +H L+    L+   + +      V+   G  + 
Sbjct: 120 GEVKDILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQA 179

Query: 221 SCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEAL 277
           S L V     +   C  G GI L+PD +++   ++ +LV+++ D  +    +Y  Y    
Sbjct: 180 SALNV-----VRSACSEGLGITLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKD 234

Query: 278 KNTGKLKAFRNFIF 291
               K++ F +F+ 
Sbjct: 235 HQPEKVRLFIDFVI 248


>gi|91792145|ref|YP_561796.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91714147|gb|ABE54073.1| LysR, substrate-binding [Shewanella denitrificans OS217]
          Length = 303

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 137/289 (47%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   GSF+H A  L LS   +S+ +S LE  +G++L  R  R ++LTE G++
Sbjct: 5   DAMRAFVSVVTEGSFSHGASHLQLSPQLVSKYVSQLEVRLGVRLLNRTTRKVSLTEAGTE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   ++   ++    +L     +P G LRI+  +      L   + +F + +P + + 
Sbjct: 65  YFQHAQQILLSIDEMDAQLGGLQQQPKGTLRISAPVSFALKHLGRLVTDFQIAHPLVNVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+++ +DI  +  D A+R+ + ++SSSLI + +  I +   A+  YL     P   ++
Sbjct: 125 LQLNDRKVDIVEEGFDVALRIGQ-LKSSSLIAKHIAPIRVVLCASADYLHKHGTPTCAED 183

Query: 186 LDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  + +  + +      ++WL    R       S L+ N+   +++  + G+G+ L 
Sbjct: 184 LKDHKYLHYSYIEMEGKASRYHWL----RGKNNQHNSKLESNNGDVLVEAAIAGAGLVLQ 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I  +      L+ I+ +       +Y  Y        K++ F +FI
Sbjct: 240 PTFIASEAIRQGKLIEILPECEPEPLGLYAVYAHRKLLPNKIRCFIDFI 288


>gi|39933988|ref|NP_946264.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|192289408|ref|YP_001990013.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|39647835|emb|CAE26355.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           CGA009]
 gi|192283157|gb|ACE99537.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 307

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 9/251 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF   A +  LS++++S+ ++ LET +G +LF R +R L LT+ G
Sbjct: 6   DFEALAIFAKVVELRSFAAVAAEFGLSKATVSKAVTRLETRLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +++    E  + E    S  P G +R+A  +  G  ++   L EF   YPD+ 
Sbjct: 66  HRLAERAAQLLADGEAAEAEALAQSAAPRGLVRLAVPMTFGVKVIAPLLPEFFAAYPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D  +R+   +  SSL+ R+L  +  +  A+  YL+    P   
Sbjct: 126 IDLHLSDAMVDLIGDGFDAGVRIAT-LPDSSLVARRLCAMPRYTVASKTYLEAYGRPTHP 184

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             L +H  + +  L  P      N        RP G      L+VN+  +++   + G G
Sbjct: 185 MHLAQHRCLGYAYLSTPNTWHYSNDAGDQVAVRPGGP-----LRVNNGEALLPSVIAGLG 239

Query: 241 IALLPDYIVKD 251
           IA LP++IV D
Sbjct: 240 IADLPEFIVGD 250


>gi|238789516|ref|ZP_04633301.1| LysR substrate binding domain protein [Yersinia frederiksenii ATCC
           33641]
 gi|238722466|gb|EEQ14121.1| LysR substrate binding domain protein [Yersinia frederiksenii ATCC
           33641]
          Length = 294

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 130/270 (48%), Gaps = 25/270 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  VAR GSFT AA +L L+QS +SR I  LE  +GI+L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMQVAREGSFTAAARRLGLAQSGVSRSIRELEERLGIQLLARTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++     ++ L+     L      PSG +RI  +      LL   L  F   YPDI+
Sbjct: 66  EQLYQTVESGFNALDMGLTTLAHYRHTPSGTVRINASQHAIDKLLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   + +  +  R    + M   A P + +    P + 
Sbjct: 126 LELISESRFVDIIAERFDAGVRLGPEVGNGMVAVRITPDMEMAIVATPEHFRRYDFPQTP 185

Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQ 233
            +L  H  I +    G L       + W    D      RP G+   S    +SY+   +
Sbjct: 186 ADLVIHPCIVYQFADGSL-------YQWELNQDDKKITHRPQGQWAFS----DSYME-AE 233

Query: 234 YCVLGSGIALLPDYIVKDNPN---LVRIME 260
              LG G+A +P+ +V D+     L+R+++
Sbjct: 234 AARLGLGLAYVPEELVADDLERGVLIRVLQ 263


>gi|299769860|ref|YP_003731886.1| transcriptional regulator [Acinetobacter sp. DR1]
 gi|298699948|gb|ADI90513.1| transcriptional regulator [Acinetobacter sp. DR1]
          Length = 299

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 142/296 (47%), Gaps = 13/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYSLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QL++ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL    +
Sbjct: 121 EIRLQLMVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGD 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237
             + ++L +H +++  +   + ++    L   D    + ++S   +  N Y+ + Q    
Sbjct: 181 IKNPEQLSEHRILSLSE---EHLDQQFILHGPDNQQKKVKVSPTVMGTNIYM-LAQLASQ 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GIALLPD   +D   +  LV+I+ D        +  YP      G L A R FI
Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289


>gi|91780995|ref|YP_556202.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91693655|gb|ABE36852.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 307

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 133/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VA + SF  A   L +S S++ +++S LE ++G++LF+R  R + LT +G    
Sbjct: 6   INVFVQVAETRSFAAAGRLLGISASAVGKRVSALEEQLGVRLFHRSTRSVALTAEGGLFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +  ++E  Q EL + ++ P G+L++  ++ L        + +F   YPD+ + L 
Sbjct: 66  ERSRRILGEIEAAQAELSQVNLSPRGRLKV--SLPLVAEPFLSVMAQFKQAYPDVDLDLE 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  IR       S L  R+L +  M    +P YL  C  P +  +L 
Sbjct: 124 FTDRRVDVIDEGFDAVIR-SGDAPDSRLTARRLGSFSMLLVGSPDYLARCGTPETASDLS 182

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
           +H  I F    P   +   W    D    + ++S   + N+  + + + + G GIA LPD
Sbjct: 183 QHACIQF--RYPNTGKLQVWPLDQDEITADLQLSAAIICNNLETRIFFALQGLGIAYLPD 240

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + ++ +     L+ +M             +P       +L+ F +F+
Sbjct: 241 FAIRQHLAAGRLIHVMPSCSEADTMFRIMWPSGKHFAPRLRVFIDFL 287


>gi|254521073|ref|ZP_05133128.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219718664|gb|EED37189.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 313

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A +GS   AA  L LS S++ ++I+ LE ++G +LF+R  R + LT++G  L 
Sbjct: 21  LLAFVRTAEAGSIVGAARVLGLSASAVGKRIARLEQDLGTRLFHRTTRRVHLTDEGDLLL 80

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +       +L   Q +L +    PSG LRI     +G   L   L  F   YP +Q++L 
Sbjct: 81  QRCRRALDELSEAQADLAQRQHAPSGLLRIGLPT-IGYRFLLPVLPGFQQRYPQVQLELD 139

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  D  IR    +  SSL  R+L        AAP YL+    P  + EL 
Sbjct: 140 FNDRIVDVVSEGLDAVIR-SGELADSSLTARRLGGFRFMLCAAPGYLQARGTPGDVSELR 198

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + F    P   +   W L  V+   G    + +  N+  +++   +   G+A +PD
Sbjct: 199 MHTALRF--RYPTTGKLHPWQLPGVEGDAGAGLPTAMTCNNMEALLAAAIGRMGLAWMPD 256

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           ++  D   +  L R++  + T        +P     + +L+ F ++
Sbjct: 257 FLAADALADGRLQRVLPALPTHQGQFSLLWPGGRHPSARLRVFIDY 302


>gi|254247307|ref|ZP_04940628.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124872083|gb|EAY63799.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 342

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 25  MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 84

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q  + KPSG LR+     LG+ ++  +L  F   YPDI ++L 
Sbjct: 85  EHCMKIIAEIAEADASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYPDITLELG 144

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP  I +L 
Sbjct: 145 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPNEIADLV 203

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI----- 241
           +H+ + F            W+  +D    E R++  + VN   + +   + G G+     
Sbjct: 204 EHHAVNFRS--SHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 261

Query: 242 -ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +LP  +   + +LV ++ D       +   YP     + K++ F ++I
Sbjct: 262 FMVLPHLL---DGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWI 308


>gi|126456200|ref|YP_001074629.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167848556|ref|ZP_02474064.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167913816|ref|ZP_02500907.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167921727|ref|ZP_02508818.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|242313852|ref|ZP_04812869.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|126229968|gb|ABN93381.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|242137091|gb|EES23494.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 303

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 136/291 (46%), Gaps = 12/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F VVA +G F+ AA QL  + SS++R +  LE  +G+ L  R  R +TLT+ G+   
Sbjct: 7   LQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L      + ++  +P G LR++  +   + +L  +L  FL  YP + + L 
Sbjct: 67  EQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D++ D  D A+R+  P +   L+ R L        A+  YL     P +  +L 
Sbjct: 127 VSDAYLDLATDRIDVAVRIGAPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPAAPGDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246
            H  + F    P      +W  + D    +  +      + L I++  VL G G+AL+P 
Sbjct: 187 AHRCLRF----PYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALVPM 242

Query: 247 YIVKDN---PNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V D+     L+ + E   +TP      VY  Y    +++ K++ F  F+
Sbjct: 243 WLVHDDIVAGRLLPLFESWCVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFL 293


>gi|325206769|gb|ADZ02222.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M04-240196]
          Length = 299

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 124/253 (49%), Gaps = 7/253 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S +EL  H  + F +  P  +   N  A +D      +IS     S   I++  C+ G 
Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDN 252
           GIA L D++V ++
Sbjct: 235 GIACLSDFLVDND 247


>gi|290476311|ref|YP_003469215.1| putative transcriptional regulator [Xenorhabdus bovienii SS-2004]
 gi|289175648|emb|CBJ82451.1| putative transcriptional regulator [Xenorhabdus bovienii SS-2004]
          Length = 304

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 23/302 (7%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  +   GS   AAE+L +S++ +SR ++ +E   G++L +R  R ++LT  G   ++
Sbjct: 8   QVFVTIVEQGSLVAAAERLDMSRAMVSRYLAEMEKWAGVRLLHRTTRKISLTSAGENAYQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            + ++    ET  ++    S    G LR++ +  LG + L   + EF+ +YP I + L +
Sbjct: 68  RSLKLLELAETMPVQQSLVSQTLRGLLRVSCSQSLGTSALSVAIPEFMRIYPQIAVNLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +NK I++  +  D AIR+   ++  +LI R L   H    AAP YL     P    +L  
Sbjct: 128 NNKVINLIEERIDLAIRITNNLE-PNLIARPLSICHSVVCAAPSYLDRKIIPQKPTDLAS 186

Query: 189 HNLIT---FGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           HN +T   FG    L  K  E ++           P    L  N    +M+  + G+GI 
Sbjct: 187 HNCLTYNFFGKSLWLFEKQHEQYS----------VPVSGTLSANESTVLMEAALQGAGIT 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARD 296
           + P Y       +  LV ++ D    +  +Y  Y         L+A  +F+   F  A  
Sbjct: 237 MQPYYSAAPHLISGQLVELLPDYQPQAMGIYGIYTSRQNMPVTLRALLDFLVGWFANAPH 296

Query: 297 WK 298
           W+
Sbjct: 297 WQ 298


>gi|188989706|ref|YP_001901716.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167731466|emb|CAP49641.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 329

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 3/244 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     + R GSFT AA +L +SQS++S  I GLE  +G++L  R  R +  TE G +L 
Sbjct: 41  LLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEATLGLRLLTRTTRSVAPTEAGERLI 100

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +  + ++E     L E    P+G +RI  T    + +L   L   L  YPDI+++L+
Sbjct: 101 QTVAPRFAEIEEALSALSEMRDTPAGSVRITATDYAAREILWPKLAVLLRQYPDIKVELV 160

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +DN   DI  D  D  +RL   ++   +  R    + M   A+P YL+    P + Q+L 
Sbjct: 161 VDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMALIASPAYLERRPLPRTPQDLT 220

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  I     +      + W L    R I       L  NS    +   + G GIA + +
Sbjct: 221 AHLCINL--RMTSAGGIYAWELEKDGREIAVRVEGQLTFNSIYEALDAALQGFGIAFVQE 278

Query: 247 YIVK 250
            + +
Sbjct: 279 DLAR 282


>gi|307727486|ref|YP_003910699.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588011|gb|ADN61408.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 336

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 9/285 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH-RV 69
           F  VA  GSF  A E+L + +SS+SR +  LE ++ ++LF R  R  +LT +G   + R 
Sbjct: 31  FLAVANEGSFARAGERLGIGRSSVSRNVQKLEAQLEVRLFLRTTRKTSLTREGELFYERC 90

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V   +E      +  S  P G LRIA+T   G+ ++   L+ F   YPDI ++L+L 
Sbjct: 91  LPGVERIVEALDGMRELRSGPPRGHLRIASTPGFGRRVVAPLLRGFHARYPDITLELLLS 150

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            +  D + D  D + R  + ++ S ++ R+L+ + M   A+P Y +    P  +++L  H
Sbjct: 151 ERVADFTTDRVDVSFRDGR-MEDSGIVARQLIAMQMVVCASPAYARVHGLPRCVEDLAGH 209

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDYI 248
             I F     +     +W   VD  +   + +     N    I+Q  + G GIA LP Y 
Sbjct: 210 RCINFCTASGRVK---DWEFKVDGHLVRHQPTAQHTFNDADLILQAVLDGVGIAQLPAYQ 266

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V        LV  +          Y CY        +++ F +++
Sbjct: 267 VSALLRERRLVSCLAQHAPDDGGHYICYLSRKHLPARIRVFVDYM 311


>gi|90417395|ref|ZP_01225320.1| hypothetical transcription regulator protein [marine gamma
           proteobacterium HTCC2207]
 gi|90330837|gb|EAS46106.1| hypothetical transcription regulator protein [marine gamma
           proteobacterium HTCC2207]
          Length = 300

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 124/270 (45%), Gaps = 20/270 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V  +GSFT AAE   +  SS+SR+I+ LE  +G  L  R  R + +TE G    
Sbjct: 7   LRYFSKVVETGSFTRAAEAFSVPPSSLSRRIADLEKTLGANLLKRSTRVVQVTEIGQLYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++  +LE +   ++    KP G LRI+  +  G+ +L   L EF  LYP+I + L 
Sbjct: 67  KQVEDILAQLEQSDETVRSYQAKPKGVLRISAMVSFGERMLLPLLDEFKTLYPEIILDLS 126

Query: 128 LDNKDIDISMDYADCAIR----LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L ++   +S D  D AIR      + +Q+  L+  + + +     AA  YL     P   
Sbjct: 127 LSDELSTLSRDDVDIAIRGGYAPNERVQAVRLMDNEFIPV-----AAASYLAAIGTPTKA 181

Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            EL +H  + F    G     C  D  WL       G P I     N+   + Q  + G 
Sbjct: 182 TELKQHQGLFFRTPAGPSPWLCQMDGQWLDVS----GSPAIIS---NNGKWLGQQAINGR 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTV 269
           GI + P ++++D  +   + E  I P+  V
Sbjct: 235 GIMMAPRWLMQDYFDSGELQELFIEPTLRV 264


>gi|325129513|gb|EGC52340.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis OX99.30304]
 gi|325135636|gb|EGC58253.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M0579]
 gi|325201503|gb|ADY96957.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M01-240149]
 gi|325207483|gb|ADZ02935.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis NZ-05/33]
          Length = 299

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 124/253 (49%), Gaps = 7/253 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S +EL  H  + F +  P  +   N  A +D      +IS     S   I++  C+ G 
Sbjct: 180 QSAEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDN 252
           GIA L D++V ++
Sbjct: 235 GIACLSDFLVDND 247


>gi|330975295|gb|EGH75361.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 309

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 139/288 (48%), Gaps = 15/288 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA  GSFT AAE+L+L+ S+IS+ I+ LE  +  +LF R  R L+LTE G   +R 
Sbjct: 12  VFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRT 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + V   LE  +I L  +  +P GK+RI      G+  +   + +F+  +P +Q  +   
Sbjct: 72  CTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFS 131

Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D   +  D  +R+       +++  +   T  +   A+P Y+    +P ++ +LD 
Sbjct: 132 DRYVDPVHEGIDIVVRIGGSDAWPAAMAHQFFGTQKLIFCASPEYVNRYGQPKTVSDLDD 191

Query: 189 HNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           H  I +G      IP   +       ++R I  P I+   V      +   + G GIA L
Sbjct: 192 HQCIGYGQNDGMAIPWYFKGRQ-PGDMERRIMHPHIA---VGDGEGEVMAVLAGLGIAQL 247

Query: 245 PDYIVK---DNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAF 286
           P ++V+   ++  LV ++ D+ T   P   V+    EAL     L A+
Sbjct: 248 PTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAY 295


>gi|330941893|gb|EGH44618.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 309

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 139/288 (48%), Gaps = 15/288 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA  GSFT AAE+L+L+ S+IS+ I+ LE  +  +LF R  R L+LTE G   +R 
Sbjct: 12  VFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRT 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + V   LE  +I L  +  +P GK+RI      G+  +   + +F+  +P +Q  +   
Sbjct: 72  CTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFS 131

Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D   +  D  +R+       +++  +   T  +   A+P Y+    +P ++ +LD 
Sbjct: 132 DRYVDPVHEGIDIVVRIGGSDAWPAAMAHQFFGTQKLIFCASPEYVNQYGQPKTVSDLDD 191

Query: 189 HNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           H  I +G      IP   +       ++R I  P I+   V      +   + G GIA L
Sbjct: 192 HQCIGYGQNDGMAIPWYFKG-RQPGGMERRIMHPHIA---VGDGEGEVMAVLAGLGIAQL 247

Query: 245 PDYIVKDNPN---LVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAF 286
           P ++V+ + N   LV ++ D+ T   P   V+    EAL     L A+
Sbjct: 248 PTWLVQCHLNSGILVEVLPDLATEGLPMNLVWLRSREALPKVSALVAY 295


>gi|328470766|gb|EGF41677.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 300

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 140/290 (48%), Gaps = 8/290 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 5   DDYIIFYHLVEQGSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGQS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  VY  + T +  +       SG ++I      G+ +L G + EF   YPDI I 
Sbjct: 65  FFVHAKAVYQAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDINID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P    E
Sbjct: 125 MELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQPIE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KHN + +        E   W    D  + +  +   L  N+  ++    +LG G+  +
Sbjct: 184 LTKHNCLVYSYQETGARE---WAFKADDKMYQVTVDGNLCTNNSSALRNVALLGQGVIYV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P  +V ++    +L+++ ++       +Y  YP   +   K+K F + ++
Sbjct: 241 PRVLVYEDLKQGSLIQLFKEETAKCLGIYAVYPYTRQQPEKIKIFIDHLY 290


>gi|330900081|gb|EGH31500.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 309

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 139/288 (48%), Gaps = 15/288 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA  GSFT AAE+L+L+ S+IS+ I+ LE  +  +LF R  R L+LTE G   +R 
Sbjct: 12  VFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRT 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + V   LE  +I L  +  +P GK+RI      G+  +   + +F+  +P +Q  +   
Sbjct: 72  CTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFS 131

Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D   +  D  +R+       +++  +   T  +   A+P Y+    +P ++ +LD 
Sbjct: 132 DRYVDPVHEGIDIVVRIGGSDAWPAAMAHQFFGTQKLIFCASPEYVNQYGQPKTVSDLDD 191

Query: 189 HNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           H  I +G      IP   +       ++R I  P I+   V      +   + G GIA L
Sbjct: 192 HQCIGYGQNDGMAIPWYFKG-RQPGDMERRIMHPHIA---VGDGEGEVMAVLAGLGIAQL 247

Query: 245 PDYIVK---DNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAF 286
           P ++V+   ++  LV ++ D+ T   P   V+    EAL     L A+
Sbjct: 248 PTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAY 295


>gi|261823042|ref|YP_003261148.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261607055|gb|ACX89541.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 301

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F  V  +GSF  AAE LH+  S+++R I  LE+ +G +L  R  R L++T+ G 
Sbjct: 4   FQAMETFIRVVDAGSFKKAAETLHVLPSTVTRSIKELESHLGARLLNRTTRALSITDVGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +   +   +    +   +  G +RI  T  L +N L   L +F   +P I++
Sbjct: 64  RYYDSCKAILRDVHAAESVTAQQKEELQGTIRIGATPSLVKNFLIPALPDFCERHPGIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L +  +DI     DC IR  +P   S L+ R L   H    A+P YL+    P ++ 
Sbjct: 124 DFHLGDATVDIVQQGIDCVIRTGEP-PLSRLVARHLGAFHWTICASPRYLEQHGYPTTLD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  +  G    +     +W        +  P    + VN   + +   V G G+  
Sbjct: 183 SLKDH--VAVGYTHSRAGRSVSWGFHDEAHTVAIPLAGQISVNDTDAYLAAGVAGLGLLR 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  Y+V+    + +LVR++ D+  P   ++  YP++   +  ++AF ++
Sbjct: 241 IASYMVRQQLSDGHLVRLLPDLEAPLEPIFILYPQSRHLSPVIRAFIDW 289


>gi|209551915|ref|YP_002283832.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537671|gb|ACI57606.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 297

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 137/302 (45%), Gaps = 20/302 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+ + L +F     SG FT AA  L + +S++S++++ LE  +G++L  R +R   LTE 
Sbjct: 4   FNLNDLHLFVQAVDSGGFTAAARHLGIPKSTVSKRVAELEGRLGVRLIQRTSRSFALTEL 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +       + E  +  ++    +P+G +R+  ++   Q  L  +L      YP +
Sbjct: 64  GREFFQHAQASIIEAEMAEGIVRRHLAEPAGSVRLTASVPTAQFTLTEHLPALAARYPKL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ + + ++ +DI  +  D A+R  R P+  S+L+QRKL +      A+P Y++   +P 
Sbjct: 124 RLSVHVTDRFVDIVQEGFDIALRSHRAPLPDSALVQRKLASHPFLILASPEYIRAHGQPR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVL 237
             +EL +H  I         + D  W    D   G+  +  LQ     +    +M+    
Sbjct: 184 RPEELTQHATIM------TSLTDNQWWLYCDN--GDESLVTLQPIMAADEPFVLMEAAAA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLK 293
           G GI  LP  + +       LVR++ D    +       P      G+L A R  + FL 
Sbjct: 236 GLGITCLPTSVCRKALATKRLVRLLPDWTAGNIETTILMPH---RRGQLPAVRAVVDFLA 292

Query: 294 AR 295
            R
Sbjct: 293 ER 294


>gi|159042911|ref|YP_001531705.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157910671|gb|ABV92104.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 293

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 137/296 (46%), Gaps = 10/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AAE L +  +++ R I  LE  +G+KLF RHARG T T+ G
Sbjct: 5   NWDEVRTAFQVARLGTVSGAAEVLGVHHATVIRHIDSLEGRLGVKLFQRHARGYTATDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +V      +LE     L     + +G+L I T++++   L+   L EF   + D+ 
Sbjct: 65  KDLLQVAQVTADQLEQLSGRLHGHGAQVTGELVI-TSLEILSPLIAPVLAEFQREHRDVM 123

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++LI D +   +    A  AIR  RKP    +++Q  L    M  +  P YL +   P+ 
Sbjct: 124 VKLITDARVFRLEYGEAHVAIRAGRKPEDPDNIVQ-PLYIQKMAFFGTPEYL-DTHGPIE 181

Query: 183 I-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           I  +   H ++  G  + +    FN     + P    R+   + +         V G G 
Sbjct: 182 IGGDYAGHRIV--GSTLDEPRAPFNIWMQENMP--AERV-VYRASDIRGAGDAVVAGVGA 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LLP +     P +VR+ + +   S  ++      L  T K+++F   +   A+ W
Sbjct: 237 GLLPVWWADKYPGVVRLCDPIDAWSSRIWLITHVDLHRTAKVQSFTGSLKAAAKAW 292


>gi|116049812|ref|YP_791381.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389746|ref|ZP_06879221.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313110563|ref|ZP_07796448.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|115585033|gb|ABJ11048.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310882950|gb|EFQ41544.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 295

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L+ F  V  SGS + AAEQ+ L+ S++SR +S LE ++G  L  R  R + LT
Sbjct: 1   MKANSDELQSFVSVVDSGSISAAAEQMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++  ++E  +  L      P+G+LRI        + +  ++ EF  LYP
Sbjct: 61  EEGRYFLDQARQILQQMEALEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ++L  ++  ID+     D AIR+   +  S+L  R L    +H  A+P YL     P
Sbjct: 121 NIQLELNTNDLIIDLLEQRTDVAIRI-GALSDSTLHARPLGASRLHILASPEYLARHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            SI+ L  H L+ F    P+ +  +  + A  DR   +P IS    +S  ++ Q  +   
Sbjct: 180 TSIEGLRGHTLLGFTQ--PEHLNRWPVVHADGDRLEIQPDISA---SSGETLRQLALSHQ 234

Query: 240 GIALLPDYI----VKDN---PNLVRIMEDVITPSFTVYF 271
           GIA L  ++    ++D    P     M +   P   VY+
Sbjct: 235 GIACLASFMTDRDIQDGRLVPLFAEQMSEYRQPIHAVYY 273


>gi|260769265|ref|ZP_05878198.1| transcriptional regulator LysR family precursor [Vibrio furnissii
           CIP 102972]
 gi|260614603|gb|EEX39789.1| transcriptional regulator LysR family precursor [Vibrio furnissii
           CIP 102972]
          Length = 303

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 127/255 (49%), Gaps = 10/255 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A+  +FT AAE+L+L++S++++ +S LE  +G+KL +R  R LTLT +G    + 
Sbjct: 12  AFVCTAQHKTFTAAAERLNLTKSAVAKSVSRLEERLGVKLLHRSTRQLTLTPEGEAYLKS 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++  +LE  +  LQ    KPSGKLRI      G+  +   L      YP++ + +  +
Sbjct: 72  CLDILGQLECAEALLQAKVDKPSGKLRIDLPAAFGRKKVLPLLLAMSAQYPELSLAVTFN 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +DI  +  D  +R+ +  +SS L+ R L    M   AAP Y+     P S  +L  H
Sbjct: 132 ERFVDIVEEGLDVVVRIGELQESSGLVARHLTVQKMVMCAAPDYVARRGVPSSFDDLKNH 191

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYL---SIMQYCVLGSGIALLP 245
           + +    +  K  +  +W+  V    GE  R      + +    +I +  + G GI+ LP
Sbjct: 192 DCV----VSLKQNQPLSWV--VKNCDGETVRFKPPATHEFSDGDAIREAVIAGCGISQLP 245

Query: 246 DYIVKDNPNLVRIME 260
            ++++D+    R+ E
Sbjct: 246 LWLIRDDLQAGRLQE 260


>gi|260870247|ref|YP_003236649.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
 gi|257766603|dbj|BAI38098.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
          Length = 323

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+HAA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSHAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|222109838|ref|YP_002552102.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221729282|gb|ACM32102.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 300

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 149/298 (50%), Gaps = 22/298 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR F  VA + SFT AAE+LH+++  +S QI  LE  +G  LF+R  R +TLT+ G
Sbjct: 7   DLNLLRAFLAVADARSFTAAAERLHIARPQVSLQIRRLENVLGAALFHRTTRTVTLTDAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +L   ++ +   LE     LQ +  + S   G+LR++  ++    ++   + EF + +P
Sbjct: 67  QRLFEESAPLMQGLEQV---LQHAGSRGSGLRGRLRVSAPVEYAVQVMSPVVAEFAVRHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L++ +K  D+  +  D +IR+   +++SS    KL        A+P YL  C  P
Sbjct: 124 EVSLELVVSDKVQDLVGEGIDVSIRVGW-LRNSSARVAKLGEFGQAVLASPEYLARCPRP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + ++L  H  I    L+P  +    W  T        R++  L+ +S +++    + G+
Sbjct: 183 EAPEDLAHHRWIAL-TLLPAPL---TWSFTNGTKDITVRMAPKLRTDSAVALRALLLNGA 238

Query: 240 GI---ALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+   +LL  ++  D  +  LVR++ +   P   VY  YP     T    A R F+ L
Sbjct: 239 GVSVGSLL--HLESDIRSGALVRLLPEWTLPKGGVYAVYP---PGTAIAPAARAFVEL 291


>gi|114328437|ref|YP_745594.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316611|gb|ABI62671.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 305

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 137/298 (45%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  LR F  VA   SF+ AAEQL +S S++S+ I GLE  +GI+L +R  R ++LTE G
Sbjct: 9   EFGALRAFAAVAEQRSFSRAAEQLGVSSSALSQLIRGLEERLGIRLLHRTTRSVSLTEAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           + L    +     L T  +E   ++ K P+G +R+          +   L      +PDI
Sbjct: 69  AALLGDIAPAIDSL-TGALEQARTAAKLPAGTVRLHCFHAAADRFVVPILPRLARAFPDI 127

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L +D+  +DI     D AIR+ + I+   +  R    I   A AAP YL     P +
Sbjct: 128 TLDLTIDDTVVDIVGSGYDAAIRIGEVIERDMVALRLGEDIRQLAVAAPAYLAEHGVPQT 187

Query: 183 IQELDKHNLITF---GDLIPKCMEDF---NWLA-TVDRPIGEPRISCLQVNSYLSIMQYC 235
            ++L +H  I +   G   P   E F   +W +  V+ P        L  +S   ++   
Sbjct: 188 PKDLLQHRCIRWRWPGQPGPYAWEFFEKGHWFSVAVEGP--------LITSSRAVMVDAA 239

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GIA L +  V D      LV ++ +   P    Y CYP+  +    L+A  + I
Sbjct: 240 LAGIGIAFLKEESVVDAFAQGALVPLLAEWSVPFPGYYLCYPQQRQMAPALRAVIDMI 297


>gi|315181802|gb|ADT88715.1| Transcriptional regulator [Vibrio furnissii NCTC 11218]
          Length = 303

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 127/255 (49%), Gaps = 10/255 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A+  +FT AAE+L+L++S++++ +S LE  +G+KL +R  R LTLT +G    + 
Sbjct: 12  AFVCTAQHKTFTAAAERLNLTKSAVAKSVSRLEERLGVKLLHRSTRQLTLTPEGEAYLKS 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++  +LE  +  LQ    KPSGKLRI      G+  +   L      YP++ + +  +
Sbjct: 72  CLDILGQLECAEALLQAKVDKPSGKLRIDLPAAFGRKKVLPLLLAMSAQYPELSLAVTFN 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +DI  +  D  +R+ +  +SS L+ R L    M   AAP Y+     P S  +L  H
Sbjct: 132 ERFVDIVEEGLDVVVRIGELQESSGLVARHLTVQKMVMCAAPDYVARRGVPSSFDDLKNH 191

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYL---SIMQYCVLGSGIALLP 245
           + +    +  K  +  +W+  V    GE  R      + +    +I +  + G GI+ LP
Sbjct: 192 DCV----VSLKQNQPLSWV--VKNCDGETVRFKPPATHEFSDGDAIREAVIAGCGISQLP 245

Query: 246 DYIVKDNPNLVRIME 260
            ++++D+    R+ E
Sbjct: 246 LWLIRDDLQAGRLQE 260


>gi|22127421|ref|NP_670844.1| transcriptional regulators [Yersinia pestis KIM 10]
 gi|45442713|ref|NP_994252.1| LysR family regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108809150|ref|YP_653066.1| LysR family regulatory protein [Yersinia pestis Antiqua]
 gi|108810659|ref|YP_646426.1| LysR family regulatory protein [Yersinia pestis Nepal516]
 gi|145597726|ref|YP_001161802.1| LysR family regulatory protein [Yersinia pestis Pestoides F]
 gi|150260336|ref|ZP_01917064.1| LysR-family regulatory protein [Yersinia pestis CA88-4125]
 gi|165925035|ref|ZP_02220867.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165937834|ref|ZP_02226395.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008721|ref|ZP_02229619.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212176|ref|ZP_02238211.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398889|ref|ZP_02304413.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419249|ref|ZP_02311002.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167426396|ref|ZP_02318149.1| LysR-family regulatory protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167466783|ref|ZP_02331487.1| substrate-binding transcriptional regulator, LysR family protein
           [Yersinia pestis FV-1]
 gi|170022858|ref|YP_001719363.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|218927825|ref|YP_002345700.1| LysR family regulatory protein [Yersinia pestis CO92]
 gi|229837308|ref|ZP_04457471.1| LysR-family regulatory protein [Yersinia pestis Pestoides A]
 gi|229840522|ref|ZP_04460681.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842933|ref|ZP_04463084.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900851|ref|ZP_04515975.1| LysR-family regulatory protein [Yersinia pestis Nepal516]
 gi|270487773|ref|ZP_06204847.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|21960511|gb|AAM87095.1|AE013957_10 putative transcriptional regulators [Yersinia pestis KIM 10]
 gi|45437579|gb|AAS63129.1| LysR-family regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108774307|gb|ABG16826.1| LysR-family regulatory protein [Yersinia pestis Nepal516]
 gi|108781063|gb|ABG15121.1| LysR-family regulatory protein [Yersinia pestis Antiqua]
 gi|115346436|emb|CAL19308.1| LysR-family regulatory protein [Yersinia pestis CO92]
 gi|145209422|gb|ABP38829.1| LysR-family regulatory protein [Yersinia pestis Pestoides F]
 gi|149289744|gb|EDM39821.1| LysR-family regulatory protein [Yersinia pestis CA88-4125]
 gi|165914246|gb|EDR32862.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923235|gb|EDR40386.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992060|gb|EDR44361.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206922|gb|EDR51402.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963243|gb|EDR59264.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051393|gb|EDR62801.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054619|gb|EDR64426.1| LysR-family regulatory protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749392|gb|ACA66910.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
 gi|229682190|gb|EEO78282.1| LysR-family regulatory protein [Yersinia pestis Nepal516]
 gi|229689999|gb|EEO82057.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696888|gb|EEO86935.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705431|gb|EEO91441.1| LysR-family regulatory protein [Yersinia pestis Pestoides A]
 gi|270336277|gb|EFA47054.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|320016810|gb|ADW00382.1| LysR-family regulatory protein [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 310

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSFT AA+ L L ++ +S+++S LE  +G++L  R  R L LTE G    
Sbjct: 7   MTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +  L+  SV+P GKLR+   + + + ++  +L EF   YP+I ++L 
Sbjct: 67  AKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++   +  +  DCAIR    ++ SS I R +  +H+  YAAP YL+        QEL 
Sbjct: 127 GSDRISHLLDNGIDCAIRGGH-LEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTHPQELS 185

Query: 188 KHNLITF--GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H  I++  G   P     F W L +       P    L  +     +  C+ GSGI   
Sbjct: 186 VHRRISWFTGQRNP-----FIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             + V+       LV ++      +  ++  YP     + +++ F ++
Sbjct: 241 APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDW 288


>gi|322832347|ref|YP_004212374.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167548|gb|ADW73247.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 290

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 13/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  V R+G+   AAEQL + Q+++ R+++ LE  +G KLF +  +G  LT  
Sbjct: 1   MNWDDVRIFLAVYRAGTLRSAAEQLSVDQTTVGRRLNTLEKLLGSKLFLKSRQGWVLTAG 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K+  +  E+     + +        +  G++ +  T  L  + +   ++     +P+I
Sbjct: 61  GRKILSLAEEIERLTVSFERRGSGDDDRLEGEVHVTATDSLAIDFVLPAIERVQHNFPNI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L      +DI    AD A+R  +P Q   LI RKL +  +  +A   Y+     P  
Sbjct: 121 RVNLTTTTHLLDIGRREADIAVRTIRPEQ-PDLITRKLASREVGLFATHKYIDRFGIPEP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239
            +  D H +  +   I +  +    LA      GEPR       +++S + +  +   G 
Sbjct: 180 GKGFDGHRIALYQSGITRSQDGL--LA------GEPRHKGRVVAELDSSMMLATFIRAGL 231

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRN 288
            +  LPDY+ K  P L+R+  +    S + V+    + L +T +++A  N
Sbjct: 232 ALGELPDYLAKMYPELIRLWPERTRKSPYEVWLVMHQDLSHTARVRAVMN 281


>gi|254189324|ref|ZP_04895835.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157937003|gb|EDO92673.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 300

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 134/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LR++     G+  +   +  F   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL +   P ++ +L
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLAHAGMPGTLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W       +   R+S  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|254521485|ref|ZP_05133540.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219719076|gb|EED37601.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 302

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 13/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    +  +GSFT AAE+L  + S++SRQ+  LE  + ++L  R++R L+LTE G   +
Sbjct: 7   LRALRAIVDAGSFTAAAERLGTTHSAMSRQLRQLEEHLQVRLLDRNSRRLSLTEAGRGYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  + +  +L+    + +    +PSG +RI+    +    L   L  FL  YP + + L 
Sbjct: 67  REAASLLDRLQEADEQARAGQAQPSGTVRISVPQVVASQELPHWLPSFLQRYPQVALDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D++ +D+     D A+R+   +  S L+ R+L +      AAP YL     P    +L+
Sbjct: 127 ADDQLVDVVGGRFDLALRIAPSLPDSQLVARELASCPRILVAAPAYLARHGLPRQAADLE 186

Query: 188 KHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H L+ F     +P         AT     G+     L+V++  ++    + G GI+L  
Sbjct: 187 QHALLGFSPTASMPPWQLHGPRGATASIEAGQ----RLRVDATPALYAAALAGMGISLFT 242

Query: 246 DYIVKDNPNLVRIMEDVITPSFTV----YFC-YPEALKNTGKLKAF 286
              V+++    R++   + P++      YF  YP A     K++A 
Sbjct: 243 ALTVQEDLRAGRLIR--VLPAWHAGQRRYFALYPHARALAPKVRAL 286


>gi|118472322|ref|YP_885777.1| LysR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118173609|gb|ABK74505.1| transcriptional regulator, LysR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 299

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 128/288 (44%), Gaps = 7/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  D LR F  VAR+G    AA  L +  +++ R+I+ LE  +G +LF R   G  LTE 
Sbjct: 5   FSADNLRYFLEVARTGRLNDAARNLGVDHTTVGRRITALEKSIGERLFDRSPGGWQLTEA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L    +E          E + S+   +G + +ATT   G  +L   L +    +P +
Sbjct: 65  GADLF-PRAETVESAVIAAYETRTSAGPLTGTVSVATTDGFGAFVLAPRLADLRRRHPHL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I++    +   +S  + D A+ L +P     L+Q  L    +  YA P YL +      
Sbjct: 124 DIEMATATEHRSLSARHFDIAVTLEEPPSRGVLVQ-ALAGYDLRLYATPGYLDDAPPIDE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +H LI + D     + D   L  +     + R++ +Q N+          G GIA
Sbjct: 183 LADLARHTLIWYID----ALLDVAPLRILGLLPHKQRVA-IQTNNITGHWLAARGGLGIA 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP YI + +P L  ++    +     +   P  L+  G+++A   F+
Sbjct: 238 PLPQYIAESDPELTCVLPQEFSVRRRYWMVIPRELRQVGRVRAVAQFL 285


>gi|172061917|ref|YP_001809569.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994434|gb|ACB65353.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 320

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 14/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + +
Sbjct: 66  YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVVVDM 125

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +
Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIAD 185

Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  HN +   +   ++   + D    + V+          L VN    +    + G+GIA
Sbjct: 186 LAHHNYLRRDSNSTMLDSLVIDAAAASRVNLN------GNLIVNHLEGLRAAVLAGAGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LL   +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 240 LLGTEVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|254254201|ref|ZP_04947518.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124898846|gb|EAY70689.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 303

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 21/298 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT +G+  +
Sbjct: 7   MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVALTAEGATYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+  +    ++   P G +R+        N +   L +F   YPD+++ + 
Sbjct: 67  ERCTRLLADLDDAETLFDDAGASPRGVVRVDLPERFALNQVIPALPDFHARYPDLRVAIS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R    +  +SL+ R++  +     A+P YL     P S  EL 
Sbjct: 127 TTDRFVDLVADGIDCAVRAGT-LSDTSLVARRIGELAQVNCASPAYLARHGTPRSPDELP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  +  G +  +   + +W  T D   GE       S + VNS  + +  CV G G+  
Sbjct: 186 DH--VAIGYVSSRTSRELDWEYT-DMDTGELHTVKMRSIVSVNSSHAYLACCVAGLGLIQ 242

Query: 244 LPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            P      ++ D  +LV ++ +   P   V   YP      G+  A R  IF+   DW
Sbjct: 243 APREGLAPLLADG-SLVEVLPEWHAPPLPVSVVYP-----YGRHLAPRVRIFV---DW 291


>gi|187924372|ref|YP_001896014.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715566|gb|ACD16790.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 304

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 137/292 (46%), Gaps = 18/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF+ AA +L L Q ++S+ ++ LE  +G +L  R  RGL  T  G + +
Sbjct: 7   METFVTVVDAGSFSAAARRLKLGQPAVSKAVAQLEERLGARLLLRSTRGLAPTAAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  H+ +  +  ++ESS   SG+LR+   +   +  +   LK FL  +P++ I ++
Sbjct: 67  EHALRAIHEADQAEQAVRESSDGLSGQLRVGAAVTFARLHVLPALKPFLDQHPNLSIDIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  +  D A+R+   +  SS+  R++          P Y      P +  +L 
Sbjct: 127 LDDRSVDLLEEGVDVALRM-GTLDDSSMTARRIANGRRLVVGTPSYFAEAGLPQTPLDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-----MQYCVLGS-GI 241
           +H  + +   +    E  +WL + D    +   S + ++  +S+     M+  VL   G+
Sbjct: 186 RHQAVVYS--LRGGGE--SWLFSRD----DGSDSTVTLSGRISVNAAEGMRTAVLAHMGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+  +++      N  +  ++ D   P+  V+  +P     T K +AF  F+
Sbjct: 238 AVASEWMFAPELANGTVQAVLTDWSLPTIDVWAVFPAGRMATTKARAFVAFV 289


>gi|239817992|ref|YP_002946902.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804569|gb|ACS21636.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 308

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 141/303 (46%), Gaps = 15/303 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F   A SGSF+ AA +L L+ +++S+ ++ LE  +G++LF R  R LTLTE G +
Sbjct: 5   NHLQSFVQSAESGSFSAAARRLGLTPAAVSKNVARLEARLGVRLFQRSTRRLTLTEGGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      L+     L +   +P+G L+++     G+  +   + +FL  YP I   
Sbjct: 65  FLGQIGGALATLQDAVAGLSKDDGQPAGTLKVSMGQAFGREHVLPMMGDFLARYPSILPD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              DN+ +D+  +  D AI     + S  ++ R+L  IH+ A AAP YL     P    E
Sbjct: 125 WHFDNQQVDLVGEGFDAAIGGGIEL-SPGVVARELARIHVVAVAAPAYLAGRALPTQPAE 183

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L + + +       G L    ++      ATV+ P   PR      N   +I    ++G 
Sbjct: 184 LAQLDALLRRSSPTGRLRSWTLQHAGGDQATVELP--RPRAI---FNDPEAIAHAALMGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+A+LP   V+    +  LVR++ +    +  V+  YP       K + F +F+  + R 
Sbjct: 239 GVAMLPMPFVERGLRSGELVRLLPEWHFDAGAVWLYYPSKKLLPAKTRVFIDFVLERFRS 298

Query: 297 WKF 299
            +F
Sbjct: 299 ERF 301


>gi|163858241|ref|YP_001632539.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261969|emb|CAP44271.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 336

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 137/294 (46%), Gaps = 15/294 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR- 68
            F  VA  GSF+ A E+L + +SS+SR +  LE  +  +LF R  R  +LT +G +  + 
Sbjct: 35  AFMAVATEGSFSKAGERLGIGRSSVSRSVQRLEQHLKTRLFLRTTRATSLTREGERFFKH 94

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               V H        L+  S  P G LR+++ I  G+N++   L +F   YPDI ++L+L
Sbjct: 95  CHIGVSHIAGAVNDMLELRSGPPRGLLRVSSGIGFGRNVVAPLLLQFSEAYPDISVELLL 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +D + D  D A +  + ++ S ++ ++LV + M   A+P Y      P ++ EL +
Sbjct: 155 NDRPVDFAGDRIDVAFQDGR-LKDSCVVAKQLVPMQMVVCASPAYADARGLPATLDELGQ 213

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIALL 244
           H+ I       + +E   W   V    G+ R     S L  N    + Q  + G GIA +
Sbjct: 214 HDCINMTCSSGRVLE---WEFMVQ---GQVRTFLPSSKLTFNDAYLVRQAVLDGRGIAQV 267

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             + V+D      LV  +          Y CY        +++ F +++  + R
Sbjct: 268 SAHQVRDCLRRGELVTALTQYAAKDRGHYICYLSREHLPARVRVFVDYMTAQIR 321


>gi|77458197|ref|YP_347702.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382200|gb|ABA73713.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 299

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 143/292 (48%), Gaps = 13/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT AA+QL LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMDSGSFTAAADQLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E+ +  +   + +P G +R++  +      L   L  FL  Y ++ +
Sbjct: 64  SYYESALRLLGEVESVEQGIAGQTAEPRGAIRVSAPLSFALAHLGCLLPPFLQRYREVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ S+LI R++ +I     A+P YL     P+  +
Sbjct: 124 EVDLSDRPVDLLGEGYDLALRI-GVLEDSTLIARRIASIERVYCASPAYLAERGAPVRPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H+ + +G           W   A   +P+       ++VN+   +    V G GI 
Sbjct: 183 DLLGHDCLPYGH-----GRSVQWRFNAGQGKPLLVNVTGRMRVNNGELLRDAAVAGMGIT 237

Query: 243 LLPDYIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP +IV    KD   LV ++++      T+   YP+  + +  ++A   F+
Sbjct: 238 YLPTFIVGAALKDG-RLVPVLDEFRPEPLTLSAVYPQHRQASRPVQALIEFL 288


>gi|294663920|ref|ZP_06729352.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606312|gb|EFF49531.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 338

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPRYLDRAGRPKD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
             EL  H  ++  +      ++ +    +  P GE R   LQ    L+   + +L     
Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239

Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
            G GI +LP+ +  +    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 240 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293


>gi|254251241|ref|ZP_04944559.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124893850|gb|EAY67730.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 320

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 20/295 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + +
Sbjct: 66  YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAARFPDVTVDM 125

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +
Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPDYLAKHGTPQTIGD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN-----SYLSIMQYCVL-GS 239
           L  HN +           D N        I     S + +N     ++L  ++  VL G+
Sbjct: 186 LATHNYLR---------RDSNSTMLDSLVIDAAAASRVTLNGNLIVNHLEGLRAAVLAGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIALL   +V D+     LV ++ D + P    +Y  Y      + K+++F +F+
Sbjct: 237 GIALLGTEVVGDDIESGRLVPLLLDAVPPHEAPIYAVYASRRHVSAKVRSFVDFL 291


>gi|115358758|ref|YP_775896.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284046|gb|ABI89562.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 311

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 134/302 (44%), Gaps = 11/302 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ +R+F  V   GSFT A+ QL +  S +SR++  LE ++G++L YR  R +++TE 
Sbjct: 12  MDFESIRIFLRVVERGSFTAASVQLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEG 71

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     + +     P G LR+     +G   L+  L EF   YP +
Sbjct: 72  GRDYYERCLRAEEILLDADRQARALRTDPEGTLRVLVPYSIGLFELEPALAEFHRRYPRV 131

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  S  + R L   H    A+P YL+    P +
Sbjct: 132 QLVLIYDNSPLDLVEHGFDVALRA-GMLTDSGYVARSLGWSHAKLAASPAYLERVGRPRT 190

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             EL +H+++  G   P         A    D PI    IS    N  +++++    G G
Sbjct: 191 PHELAQHDILYVGRDAPGLTLRLTNAAGDVADVPIRPVLIS----NESITVLRQAASGGG 246

Query: 241 IALLPD-YIVK--DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IAL+   YI +  +   L  ++ D   T    ++  YP       K++ F  F+      
Sbjct: 247 IALISTHYIARRLEKNELEIVLPDWHRTDDVELHALYPRRATLDSKVRIFVEFLTEVFTG 306

Query: 297 WK 298
           W+
Sbjct: 307 WR 308


>gi|289677239|ref|ZP_06498129.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
          Length = 302

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 141/290 (48%), Gaps = 10/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGS T A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDITPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  +  +   + +P G LR++  +      L   L  FL  Y ++ +
Sbjct: 64  SYYESALRLLAELEQVEQGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYREVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDVVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ + +G           W     D+P+       ++ N+   + +  + G GI  
Sbjct: 183 DLHTHDCLPYGH-----SRQAQWRFQGQDKPLTLNVSGRMRANNGELLRESAIAGLGITY 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +IV       +LVR+++D+     T+   YP+  + +  ++AF  F+
Sbjct: 238 LPTFIVGAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287


>gi|317053057|ref|YP_004119411.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953384|gb|ADU72855.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 303

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 96/183 (52%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F + A+ GSFT AAE+L L++S++ + +  LE  +G+KLF R  R L+LT +G +    
Sbjct: 12  AFVITAQLGSFTAAAERLSLTKSAVGKSVGRLEDRLGLKLFQRSTRHLSLTPEGERFLAS 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE  + EL     +P+G+LR+      G+  +   L +    YP++ + +   
Sbjct: 72  CQSAIEILEQAEAELTSQIAQPAGRLRVDVPAAFGRQRILPILLDITRHYPELSLTVTFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +D+  +  D  IR+ +   SS LI R+L T  +   A+P YL+   EP S  EL +H
Sbjct: 132 ERFVDLIEEGIDLVIRIGELADSSGLIARRLTTQKLVVCASPGYLREQGEPASPSELSQH 191

Query: 190 NLI 192
           + +
Sbjct: 192 HCV 194


>gi|239503475|ref|ZP_04662785.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB900]
          Length = 306

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 138/285 (48%), Gaps = 10/285 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++ + GS    A +L+L+  ++SR+++ LE  +G++L  R  R ++LT +G   
Sbjct: 6   ELAFFCLLVKQGSLVATARELNLTPPAVSRRLTQLEERLGVRLLNRTTRRISLTSEGEVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++  +  +  S   P G LR+   +  G++ +   +  F  +YPD+ +QL
Sbjct: 66  FENAVRILKEIDEMERLVSSSRAAPKGVLRVNAPLGFGRSYIAPAISTFAKIYPDVDVQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ I++  +  D +IR  + I  S LI +KL        A+P YLK   +PL+  +L
Sbjct: 126 HLTDRPINLPDEAIDVSIRFGE-IPDSRLIAKKLAANRRLLCASPSYLKKAGQPLTPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I    +I +    + NW  +  + +   ++   L  N     + + + G GI + 
Sbjct: 185 TQHQCI----VIRQNDSAYGNWRLSHGKQVETVKVHGQLSTNDGAVALNWALEGYGILMR 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            ++ V     +  LV+++ D  TP   VY  Y E L  + K+  F
Sbjct: 241 AEWDVAKYLRSGRLVQVLADYETPPADVYAVYLERLNLSPKVAHF 285


>gi|206579244|ref|YP_002236117.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|290511907|ref|ZP_06551275.1| LysR family transcriptional regulator YhjC [Klebsiella sp. 1_1_55]
 gi|206568302|gb|ACI10078.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|289775697|gb|EFD83697.1| LysR family transcriptional regulator YhjC [Klebsiella sp. 1_1_55]
          Length = 299

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 135/301 (44%), Gaps = 21/301 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE L L + S+SRQI  LE+ +G++L +R  R + LT+ G   +
Sbjct: 7   MQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+      Q      SG+LR+   +   + L+  +L  FL  YP I+++L 
Sbjct: 67  ERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKLVIPHLPTFLQQYPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   ++ S LI R L  +     A+P YL     P S+++L 
Sbjct: 127 SSDRLVDVIREGFDCVVRV-GALKDSGLIARPLGKLTQINCASPDYLARFGYPQSLEDLA 185

Query: 188 KHNLITFGDLI---PKCME-----DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            H LI +   +   P   E        W+ T            L VNS  +    C+ G 
Sbjct: 186 DHALIHYASTLGVRPPGFEVVIDGAVRWIKTG---------GILTVNSTETYQAACIAGL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  +P   V++     +L  I+         V   YP     + ++  F  ++    +D
Sbjct: 237 GIIQVPRTGVREALRAGDLTEILPQYRAEPLPVSLIYPHRRNLSRRVHLFMEWLGGLMKD 296

Query: 297 W 297
           +
Sbjct: 297 Y 297


>gi|71735958|ref|YP_275765.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556511|gb|AAZ35722.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 302

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEIEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L  H+ + +G           W   V    G+P I      ++ N+   +    V G G
Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP +IV     + +LVR++ D+     T+   YP+  + +  ++AF  F+
Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLYDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287


>gi|254255290|ref|ZP_04948606.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124901027|gb|EAY71777.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 303

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 128/287 (44%), Gaps = 9/287 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+  SF+ AA  L +  S++SR++S LE  +G  L  R  R L+LT QG
Sbjct: 6   DLNDIAVFVRVAQFESFSRAARALGMPVSTVSRKVSALEERLGATLLQRTTRKLSLTAQG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  SE    L   +  + ++  KP G LRI+  + L Q      L  FL  YP IQ
Sbjct: 66  RAYFDQCSEPLSHLYDAERVITQTQKKPEGVLRISGPVMLEQEPFYAFLSAFLKDYPQIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   N  ID+  +  D AIR  + +Q SSL+ +++         +  Y +    P   
Sbjct: 126 VDLYFTNAFIDLIAENVDIAIRFGE-LQDSSLVAQRVGRSVRQLVVSADYARTHTLPSRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +EL +H  +    LI     +  W     R   +  +S  +    +  +  + + G GIA
Sbjct: 185 EELSQHPCV----LINARNNETEWQLVSRRKAVKVHVSGPVAARDFHIVHAFALRGHGIA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LLP         +  LV ++ +  +P   V+  YP       KLKAF
Sbjct: 241 LLPSSYCDPHIASGELVHVLPEWSSPEIFVHAVYPTRRFMPSKLKAF 287


>gi|254449652|ref|ZP_05063089.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198264058|gb|EDY88328.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 292

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 137/298 (45%), Gaps = 10/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AA+ L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAFQVARIGTVSGAADVLGVHHATVIRHIDALEQRLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +V +    +       ++      SG L + + I L   +L   L +F    PD+ 
Sbjct: 63  QDLMQVAAATDDQFTQLAGRIRGQGEGVSGDLVVTSLIML-SPILTPVLAKFRRENPDLT 121

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +  ++   +    A  AIR    P Q  +++Q   V+  MH  AAP Y+     P  
Sbjct: 122 VRFLTGDRLFRLEYGEAHVAIRAGEAPNQPDNVVQ-PFVSQTMHLVAAPSYIAEYGLPDG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L  H  I  G    +    FN WL      + + RI   +   + ++    + G+GI
Sbjct: 181 ESDLVNHWFI--GHDSAESRAPFNRWLT---EKVPQNRI-VFRTTDHRAMFDAVLEGAGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +  + +K +P LV ++      S  ++      L  T K++AF  F+  +A  W+ 
Sbjct: 235 GFVATWELKRHPELVEVIPSEEEWSGPLWLVTHVDLHRTTKVQAFLTFLKKEAEGWEL 292


>gi|83645987|ref|YP_434422.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634030|gb|ABC29997.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 302

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 115/249 (46%), Gaps = 13/249 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW++ R F V A  GS + AA  L +SQ ++SRQ+S LE E+ + LF R ++GL LT
Sbjct: 13  VNFDWNQARAFLVTAEEGSLSAAARALGISQPTLSRQVSALEKELSVALFERGSKGLELT 72

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L      +        +     +    G + I+ T      +L   + +   LYP
Sbjct: 73  PNGLALLGYVRAMGEAAGGLSMAASGHARSVEGTIVISATEVTAAFILPSIIMKLRALYP 132

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I +I  N   D+    AD AIR  +P Q   LI RKL  I    YAAP YL     P
Sbjct: 133 GLHIDIIASNIASDLKRREADIAIRAFRPTQ-PDLIARKLSDIKAALYAAPSYLDRIGRP 191

Query: 181 LSIQELDKHNLITFG---DLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + +E    + + F    D   K +++  + L+  + P+        + + +L+  +   
Sbjct: 192 KTPKEFSNAHFLGFSTNNDAYIKALKEHGFELSDKNFPV--------KTDGHLAHWEMTK 243

Query: 237 LGSGIALLP 245
            G GI ++P
Sbjct: 244 QGVGIGVMP 252


>gi|326388478|ref|ZP_08210073.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207026|gb|EGD57848.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 297

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 123/275 (44%), Gaps = 6/275 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F VVA   SFT AA +L LSQS++S  +  LE  +GI+L  R  R ++ TE G
Sbjct: 5   DLADLSAFLVVAEERSFTRAAARLGLSQSALSHAMRRLEEHLGIRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL    +     +     ++     KPSG +R+  +    ++LL   L+  L  YPDI 
Sbjct: 65  EKLLATLAPAVDSIAEGITQIGRLRDKPSGTIRVTVSDHAARSLLWPALERLLPDYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN  IDI     D  IRL + +    +  R    + M    AP Y +    P + 
Sbjct: 125 VEISIDNGFIDIVEGRFDAGIRLGEAVARDMIAVRIGPPMRMACVGAPAYFERHPVPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +      + W    D  I   R+   L  +     +Q    G G+A
Sbjct: 185 QDLAHHTCINL--RMASSGALYAWEFEKDGRIMNVRVEGQLTFSGSSMAVQAAEAGFGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           +  + +V+++     LVR+++D   P    +  YP
Sbjct: 243 MTIEDVVRESITQGRLVRVLDDWCPPFPGYHLYYP 277


>gi|310814617|ref|YP_003962581.1| transcriptional regulator, LysR family, putative
           [Ketogulonicigenium vulgare Y25]
 gi|308753352|gb|ADO41281.1| transcriptional regulator, LysR family, putative
           [Ketogulonicigenium vulgare Y25]
          Length = 292

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 132/303 (43%), Gaps = 24/303 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD++R  Y VAR G+ + AAE L +  +++ R I  LE  +G KLF RHARG T TE G
Sbjct: 3   DWDEIRTAYQVARFGTVSGAAEALGVHHATVIRHIDALEGRLGAKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       +Q    + +G+L I T++     LL   L  F   +PDI 
Sbjct: 63  QDLLRVAQVADDQFNQMITRIQSHKEELAGELVI-TSLQGMTELLLPVLMAFQAEHPDII 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +   +   +    A  AIR     +    + + L    M   AA  Y+     P S 
Sbjct: 122 LRHLSGERLFRLEYGEAHIAIRAGSIPEDPDHVIQPLAQHPMALVAAESYIARYGLPASE 181

Query: 184 QELDKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVL- 237
            +   H  +          ED+      WLATV      PR   +     L  M   V+ 
Sbjct: 182 ADFAGHRFVGHD------AEDYRAPYSRWLATV-----VPRKQVVYRTLDLQEMYAAVIA 230

Query: 238 GSGIALLPDYIVKDNPNL---VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+GI  +P +++  NP L   V + +D I+P + V       L  + K++ F   +   A
Sbjct: 231 GAGIGFVPRWLLGVNPELREVVPLRDDWISPLWVVTHV---DLHRSAKVQGFLRMLKGAA 287

Query: 295 RDW 297
           RDW
Sbjct: 288 RDW 290


>gi|146313314|ref|YP_001178388.1| putative DNA-binding transcriptional regulator [Enterobacter sp.
           638]
 gi|145320190|gb|ABP62337.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 308

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G   E L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGMTAEMLKEYPGLTVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L ++ M   A+ +YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVVCASKNYLLQFGVPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             H+ + +  + P    +      L+T   P G         N  ++I ++ V G+GIA 
Sbjct: 185 SNHSWLEY-SVRPDSEFELIAPEGLSTKLLPQGR-----FVTNDPMTISRWLVAGAGIAY 238

Query: 244 LP 245
           +P
Sbjct: 239 VP 240


>gi|152984456|ref|YP_001348586.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959614|gb|ABR81639.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 309

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 131/289 (45%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F + A SGSFT AA Q  ++ +++SR ++ LE  +G++LF R  R + L++ G   H
Sbjct: 13  LELFCLAAESGSFTAAANQAGVTPAAVSRSVARLEERLGVRLFVRSTRQMRLSDAGRDYH 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +   +L         S +  SG LRI+       + L   L  F   YP +++ + 
Sbjct: 73  QQCRQALAQLLEAGHRASGSQLSASGLLRISVPTPYAHHRLLPALPRFRERYPSVEVDVH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  ++ID + +  D AIR  +P   S+L+ R+L    +   AAP YL+    P  + +L 
Sbjct: 133 VSTRNIDFTEEGYDLAIRGSEPA-DSTLVARRLEEAELVLVAAPDYLRRRGRPRHLDDLA 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIG---EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I F    P       W   VD RP+        SC +   YL+     + G+GI  
Sbjct: 192 EHECIQFER--PSSGRRVPWNLLVDGRPLAIATRGGYSCQE--DYLAGTTLALAGAGIFQ 247

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + V+   DN  L  ++          +  YP A     +++AF  F
Sbjct: 248 AYRFSVQRALDNGELEEVLPSHGGAHRPFFLLYPHARYLPQRVRAFVEF 296


>gi|94313188|ref|YP_586397.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93357040|gb|ABF11128.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 350

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 136/295 (46%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   +++  +  V   G  + AA  + LS+S +S++IS LE E+G  L  R +R +  +
Sbjct: 28  MSLRTEEIEAYLRVVELGGISAAARHMGLSKSVVSKRISDLERELGASLLQRSSRRMQPS 87

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +        +L      + E++ +  G+LRI   +  G   L   + EF    P
Sbjct: 88  ESGRYFYEQARAAMSQLTQAAQSVSEAAQEVCGELRILAPMSFGTRWLSPLIAEFGRANP 147

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L LD++ +D++    D AIR+ + ++ S LI RKL         +P Y      P
Sbjct: 148 RLRLSLELDDRLVDLAYGGYDVAIRITR-LRDSDLIARKLAPSRRVVCCSPDYAARAGLP 206

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++++  H  +++ + +P  +  F   A  + P           N+   +    + G G
Sbjct: 207 RTVEDIGHHACLSYSNSLPGQIWTFQPDAHEEAPKTITPRGIYTANNGEVLRDAVLAGHG 266

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           +A+LP +IV ++    R++E  + P  T     ++  YP     + KL+A   F+
Sbjct: 267 LAVLPRFIVWEDLRAGRLIE--VQPGATPVEDGIFAVYPRNAFGSAKLRALVQFL 319


>gi|260466743|ref|ZP_05812929.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029473|gb|EEW30763.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 293

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 11/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    AA++L L+ +++SR+I+ LE  +  KLF R   G  LT  
Sbjct: 1   MNWDDVRIFLAVARAGQILGAAKRLELNHATVSRRIAALEEALRTKLFRRLTTGSELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +   +   +   +   +  +       SG +RI      G   L   L E   L+ ++
Sbjct: 61  GERFLDIAERMEGDMIAARSTISGEGDDVSGTVRIGAPDGFGVAFLAKRLGELTALHREL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P +   L+  KLV   +  +A+  Y +    P +
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPTE-GRLVAGKLVDYTLGLFASRAYAQAHGLPRT 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL +H LI +  DLI     D+    + D        +   ++S L   +    G+GI
Sbjct: 180 AAELGQHTLIGYVPDLIVSPSLDYAAEFSPDWR------TSFAISSALGQAEAVRSGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290
            +L  ++ +  P L+ +  DV+ P    Y+  Y E+++   +++   ++I
Sbjct: 234 GILHTFVARSMPELMAV--DVVAPIRRAYWLVYHESVRPLRRVQIVASYI 281


>gi|209516442|ref|ZP_03265298.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503204|gb|EEA03204.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 331

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 133/298 (44%), Gaps = 24/298 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFVRVVEAGSFTAAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTTAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            + + ++   ++  + E   +  +P+G LR+ +   +GQ+ +   +  +  LYPD+ I+L
Sbjct: 66  LKRSQQILADVDIAEEEASCAHERPTGALRMHSFASIGQHYVLPAISRYRALYPDVTIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    AD A+     + +S LI   L T      A+P Y++    P    +L
Sbjct: 126 TLSQRMPDLFEGSADVAVIGASMLPNSDLISFPLGTTFSILCASPAYVRAHGAPKKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H  +    L         W  T+D P G   +     + VN   S++     G GI +
Sbjct: 186 AHHECLI---LHTPAFPPHEW--TLDGPNGSELMEVDGPVHVNIAESLIVAIREGMGIGM 240

Query: 244 LPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +P Y     ++D   LVR++ D      TVY  YP            R FI  K R W
Sbjct: 241 VPLYAAISGLRDG-TLVRVLPDYTLQRTTVYALYPS-----------RKFIDAKTRTW 286


>gi|16263952|ref|NP_436744.1| putative transcriptional regulator protein [Sinorhizobium meliloti
           1021]
 gi|12007637|gb|AAG42545.1| GstR-type transcriptional regulator [Sinorhizobium meliloti]
 gi|15140076|emb|CAC48604.1| putative transcriptional regulator protein [Sinorhizobium meliloti
           1021]
          Length = 310

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 143/299 (47%), Gaps = 16/299 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF      GS   AA +L  S +++SR +S LE  VG++L +R  R L L+E G +
Sbjct: 5   DAMKVFVAAIDEGSLAGAARRLKRSPTAVSRALSFLEAHVGVELLHRTTRTLKLSEAGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V   LE   +        P G L I++   LG+ +L+  L +FL LYP + ++
Sbjct: 65  YAAACRRVLTDLEEADMLAGGERSAPRGMLTISSPPILGEEILRPILDDFLDLYPTVSVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQ 184
           L+L ++ +++  +  D A+R+ + +  SSLI  +L   +     A+P YL N        
Sbjct: 125 LLLLDRFVNLVDEGVDIALRIGQ-LADSSLISTRLGGDVRRVVVASPRYLANHPRIEEPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL----ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
           +LDKH ++ F +     +E +++     ++V R I   PR  C+ VNS  +       G 
Sbjct: 184 DLDKHQILAFTNF---GLESWSFTPAKGSSVPRTIQFTPR--CI-VNSVRAAAASAAAGR 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+  L  Y V +   +  L  ++ D   P    +   P+   +  K++AF +F   + R
Sbjct: 238 GLTRLYSYHVAEYVRDGRLEIVLADAEHPPLPAHLIAPQGRMSVPKVRAFVDFAAPRLR 296


>gi|107023592|ref|YP_621919.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690676|ref|YP_836299.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893781|gb|ABF76946.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648765|gb|ABK09406.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 324

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q  + KPSG LR+     LG+ ++  +L  F   YPDI ++L 
Sbjct: 67  EHCMKIIAEIAEADASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYPDITLELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP  I +L 
Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPNEIADLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI----- 241
           +H+ + F            W+  +D    E R++  + VN   + +   + G G+     
Sbjct: 186 EHHAVNFRS--SHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 243

Query: 242 -ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +LP  +   + +LV ++ D       +   YP     + K++ F ++I
Sbjct: 244 FMVLPHLL---DGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWI 290


>gi|56710300|dbj|BAD81016.1| putative transcriptional regulator LysR-type [uncultured bacterium]
          Length = 303

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 141/299 (47%), Gaps = 29/299 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F VVAR+ SF   A +L +S++ +S++++ LE  V  KLF+R  R ++LT QG  
Sbjct: 8   EDLRLFCVVARNRSFAETARELGISKAVVSKRMALLEAAVQEKLFHRTTRNVSLTAQGEI 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +H+    +   ++     +      PSG LRI ++   G++ L   L E    +P ++IQ
Sbjct: 68  VHQWAQRIREDIDLMGEAISREKAAPSGLLRICSSTGFGRSRLAPALSELARQFPQLEIQ 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +     IRL   +   ++I+R++        AAP YL     P ++ +
Sbjct: 128 VELFDRPVDLVEEGFQLDIRLGH-VHEGNVIKRRIARNRRVLCAAPAYLAQYGTPQTLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238
           L  H  I     I +  +DF  W   +  P G   ++ ++V+  LS      + Q+ + G
Sbjct: 187 LQNHRCIP----IRERDQDFGRW--ELHGPAG---VAAIKVSGPLSANNGEIVRQWAIDG 237

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-------CYPEALKNTGKLKAFRNFI 290
            GI L   + V  +     I   ++ P    YF        YP  L  + K+K    F+
Sbjct: 238 HGIILRSTWDVSRD-----IAAGLLAPVLPQYFQPADVWAVYPSRLSVSAKVKVCVEFL 291


>gi|107028293|ref|YP_625388.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|105897457|gb|ABF80415.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
          Length = 340

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 13/289 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  +G+F+ AA+ + ++   +SR I+ LE  + I+LF R  R ++LTE+G + +  
Sbjct: 48  VFAAVVDAGTFSAAADVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVSLTEEGRRFYEQ 107

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE         +    GKLRI     + + +L   L  F+  +P+++I+LI  
Sbjct: 108 VMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRAILGPRLDAFMDAHPELEIELIAR 167

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK- 188
           +   D+ MD  D A+R  +P ++SSLI RKL+   +   AAP Y+     P   ++L+  
Sbjct: 168 DSLGDLVMDGFDLAVRFGEP-RASSLIARKLLDTGVVTVAAPSYIARRGRPAKPEDLEDR 226

Query: 189 -HNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242
            H  + F +  P+  + F W       R + + R   L VN   +++  C+ GSGIA   
Sbjct: 227 HHRCLEFRN--PETGKPFAWEFHRKRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 283

Query: 243 -LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  + ++ D   L+ +  +     + +Y  YP       K +AF +FI
Sbjct: 284 LLGAEPLIADG-RLINLFPEWADERYPLYAYYPSRHHVPAKTRAFLDFI 331


>gi|118588441|ref|ZP_01545850.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Stappia aggregata IAM 12614]
 gi|118439147|gb|EAV45779.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Stappia aggregata IAM 12614]
          Length = 293

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 140/291 (48%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  S  F+ AA ++  S++ +S+ +  LE E+G++L  R  R ++LTE G   +
Sbjct: 1   MRCFIQVVDSNGFSAAAREMGRSKALVSKYVGELEDELGVRLLNRTTRQVSLTEVGEAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  SE+  +++  Q  +Q S  +  G+LR++    +G +LL   + +FL+ YP+I + L 
Sbjct: 61  KEASEILQRIDDLQASVQSSHQEVRGRLRVSAPRSMGDDLLNQAMMQFLVRYPEINLDLR 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D A+R+ + ++ SSLI RK+        A P  ++    P    +L 
Sbjct: 121 LEDRFVDLVEEGFDLAVRVAQ-LEDSSLIARKIAPFRTVVCATPKTVETYGAPKVPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242
               I   +   K     NW    +   GE R S      L+VNS  +     +   G  
Sbjct: 180 TRPCIIDTNYRYKQ----NWAFHTN---GE-RTSVTVKGPLEVNSAAAARDAALCNLGFL 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P + V     +  LV ++E    P   +Y  YP     + K++AF +F+
Sbjct: 232 RTPLFFVSKEIRDGRLVLLLESHEEPMRGIYAVYPHRRHLSAKVRAFVDFL 282


>gi|153947540|ref|YP_001399540.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959035|gb|ABS46496.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
          Length = 318

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSFT AA+ L L ++ +S+++S LE  +G++L  R  R L LTE G    
Sbjct: 7   MTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +  L+  SV+P GKLR+   + + + ++  +L EF   YP+I ++L 
Sbjct: 67  AKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++   +  +  DCAIR    ++ SS I R +  +H+  YAAP YL+        QEL 
Sbjct: 127 GSDRISHLLDNGIDCAIR-GGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTHPQELS 185

Query: 188 KHNLITF--GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H  I++  G   P     F W L +       P    L  +     +  C+ GSGI   
Sbjct: 186 VHRRISWFTGQRNP-----FIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             + V+       LV ++      +  ++  YP     + +++ F ++
Sbjct: 241 APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDW 288


>gi|239813686|ref|YP_002942596.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800263|gb|ACS17330.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 315

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 136/288 (47%), Gaps = 16/288 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V  +G+FT AA+ L L + +IS+Q+  LE  +  +L  R  R +T+T  G+  +
Sbjct: 7   MRLFVRVVEAGTFTRAADSLGLPKGTISKQVQALEKRLRSRLLNRTTRRVTVTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +   L+  +  +  +   P G+LR+     L + L+  +L EF   YPDIQ+ L 
Sbjct: 67  DRTVRLLADLDDIESNMSNAQTNPRGRLRVDVGTSLARLLIIPHLAEFQARYPDIQMDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR  + +   SL+ R++ T      AA  Y+     P    E+ 
Sbjct: 127 VCDRMVDLIGDSVDCVIRGGE-LHDQSLVARRVGTQEFVTVAAADYVARKGSPCHPSEIG 185

Query: 188 KHN--LITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           K +  L+ F    G   P   +      +V  P    R+   + N+Y+S ++    G GI
Sbjct: 186 KKHMCLVYFSPHSGKHFPLEFQKDGESISVAGPY---RLGLDERNAYISSVR---AGLGI 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +  +  +    N  +V+++ D   P+  VY  YP     + K++ F
Sbjct: 240 GQISSFQAQRYLHNGAMVQLLPDWTQPTQPVYVVYPPNRHLSAKVRVF 287


>gi|170734020|ref|YP_001765967.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817262|gb|ACA91845.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 324

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q  + KPSG LR+     LG+ ++  +L  F   YPDI ++L 
Sbjct: 67  EHCMKIIAEIAEADASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYPDITLELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP  I +L 
Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPNEIADLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI----- 241
           +H+ + F            W+  +D    E R++  + VN   + +   + G G+     
Sbjct: 186 EHHAVNFRS--SHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 243

Query: 242 -ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +LP  +   + +LV ++ D       +   YP     + K++ F ++I
Sbjct: 244 FMVLPHLL---DGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWI 290


>gi|84684446|ref|ZP_01012347.1| transcriptional regulator, LysR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667425|gb|EAQ13894.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 298

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 12/293 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +SFDW++ R F V A  GS + AA  L L+Q ++ RQ+  L+ E+G+ LF R  RG+ LT
Sbjct: 10  VSFDWNRARAFLVTAEEGSLSAAARALGLAQPTLGRQVEALQEELGVTLFERAGRGMQLT 69

Query: 61  EQGSKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             G  +    R   E   +L        ++     G + I+ +      LL   +++   
Sbjct: 70  PAGHAMIEHARAMGEAAGRLSNVAFGQNDTM---EGPVTISASDAYAGLLLPPIIEKMTE 126

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P I + +++ N   D+    AD AIR  +P +   LI RK+       +A+P Y  + 
Sbjct: 127 AEPRITVNVVVSNTASDLLRREADIAIRNFRP-EEPDLIARKIRDAEARMFASPDYAASL 185

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               S  +  K   +     + +  +    L  +  PI E  +  +   ++L +      
Sbjct: 186 GPIQSKDDFAKARFVG----LDRTGQFLGMLQQMGYPISEANVP-VHTENFLVMWALVKR 240

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI ++   I   +P +VR+ ED  T  F ++      L    +L+   +F+
Sbjct: 241 GMGIGMIDSVIGDADPGVVRLWEDEPTLGFPIWLVAHRDLHQNRRLRFVWDFL 293


>gi|319763237|ref|YP_004127174.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330825431|ref|YP_004388734.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317117798|gb|ADV00287.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329310803|gb|AEB85218.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 304

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 24/298 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +AR+G+   AA +  +  ++++R+I  LE ++G  LF R A G  LTE 
Sbjct: 1   MDWDNLRYFLELARTGTLAAAARRTGVEHTTVARRIQALEKQMGAPLFAREAAGHRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQE------SSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           G  L          +E   + ++       S+  PSG +R+  T   G  +L  +L    
Sbjct: 61  GRHL----LPAVEAMEAAVLGVERASPANASAAGPSGLVRVGATEGFGTLILAPHLARLT 116

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P + I L+   + + +S   AD  I L +P + S ++ R L    +  Y    YL  
Sbjct: 117 QRHPHLSIDLLALPRMLHLSRREADIVISLERPKRGSVIVTR-LADYTLRLYGQREYL-- 173

Query: 177 CREPL--SIQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
            R PL  + ++L  H  I++ D  L  K ++  + L   +R         L+  S  +  
Sbjct: 174 ARRPLVATREDLRHHAFISYVDDLLFTKELQFLDQLYPPER-------FALRSTSITAQY 226

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    G+G+A+LP ++   +P L R++      + T +   P   K+  +++A   F+
Sbjct: 227 EAVRAGAGLAVLPAFLADRDPILARVLPHEAAFTRTFWMSMPAEAKHLARMQAVWAFL 284


>gi|50121846|ref|YP_051013.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612372|emb|CAG75822.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 297

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 127/270 (47%), Gaps = 7/270 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G +L 
Sbjct: 9   LTAFVVVAEERSFTKAALRLGMAQSALSQIVRRVEERLGLRLLARTTRSVAPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H L+T    L E   +PSG LRI T     + +L   +K  L   PDI I++ 
Sbjct: 69  AKLGPMLHDLDTVIGSLGELRDRPSGTLRITTVEHAAKTILMPAMKRLLADNPDIHIEVS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+  +D+  +  D  IRL   I    +  R    I M   A+P YL     P +  EL 
Sbjct: 129 VDHALVDVVANQFDAGIRLGGEIDKDMIAMRIGPDIPMAIVASPAYLAMRPAPTTPAELI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H++I F   +P       W L +  R I       L VN+   ++   + G G+A +  
Sbjct: 189 DHSIINF--RLPTSGTLIGWRLMSGGREITVRGQGQLVVNTVDLLVDAVLDGHGLACIHL 246

Query: 246 DYIVK--DNPNLVRIMEDVITPSFTVYFCY 273
           D I +  DN +L++++    TP    Y  Y
Sbjct: 247 DQIQRFVDNGSLIQVLSQ-FTPDMPGYHLY 275


>gi|332534665|ref|ZP_08410496.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035877|gb|EGI72359.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 297

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 133/265 (50%), Gaps = 12/265 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S+  D LR F  + + GSF  A+  L +S S++SR+I  LE  + + L  R A  +TLT 
Sbjct: 4   SYSLDDLRYFCTIVKLGSFKKASINLGMSLSTLSRRIRLLEQALQLTLLNRDAHRVTLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    +++ ++E  +  L +   +P GK+RI+  I +G++ L     EFLL YPD
Sbjct: 64  TGELYYDRYRKLFDEVECIEQALCDEKDQPKGKIRISAPIYMGKHFLSAIFCEFLLQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L   N  IDI  +  D A R+R P   + +I R+L   H    A  +Y      P+
Sbjct: 124 IQLDLRFSNNLIDIEKEGIDIAFRVRNPAIDNWVI-RELKLTHNLLCAHQNY---AHHPI 179

Query: 182 S-IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           +  ++L++H  IT   L+P  +++     T +     P     L+V+    + Q    G 
Sbjct: 180 THPEQLEEHPKITCVGLVPWQLKN---QQTNEEYCFNPNTHVRLEVDEIQMMKQAVESGV 236

Query: 240 GIALLPDYI---VKDNPNLVRIMED 261
           GI+ +PDYI   + +   L RI+ D
Sbjct: 237 GISYIPDYIALPLIEATKLKRILPD 261


>gi|260778699|ref|ZP_05887591.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604863|gb|EEX31158.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 293

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 35/300 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ +     V  +GS + A+ +L ++ S++ R+I G+E ++G+ LF R   G  +T +
Sbjct: 6   LDWNDIPFVLAVCETGSLSAASRKLGVNHSTVFRRIEGVELKLGVTLFERLQTGYVMTAE 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K  +   E+   ++    EL   + +  G+L I TT  L   L+    + F   YPD+
Sbjct: 66  GEKFFQHAQELKEGVDRIHRELGGQNSRLEGQLTITTTDSLMYTLVD-IFRGFQYAYPDV 124

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ ++   K++D+    AD A+R  R P +    + RKL  I    YA+ +Y++      
Sbjct: 125 ELCILTGAKNLDLVQREADIALRPTRNPPE--HWVGRKLSEISYATYASHNYIE------ 176

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-----------RPIGEPRISCLQVNSYLS 230
                      T  D  P   E+F WL  +D             +          NS + 
Sbjct: 177 -----------TMADDKP---ENFRWLRLIDNLNQSSMNKIVHQLKHADAPVTISNSLMG 222

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + ++ V G GIA LP Y+ + NPNL  I  ++      ++      ++ + K+ AF  ++
Sbjct: 223 VHEFAVAGFGIAALPRYLCESNPNLHSIHRNLSQYDTELWLLAHPDMRRSAKVHAFFEYV 282


>gi|221066883|ref|ZP_03542988.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220711906|gb|EED67274.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 313

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 146/307 (47%), Gaps = 24/307 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + +++   VA   SFT AA  L  +QS ISR I+ LE ++G +L +R+ R ++LT 
Sbjct: 17  TMDLNAVQMLIKVAECKSFTQAAHILGTTQSRISRAIAQLEADLGTRLLHRNTRNVSLTP 76

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L   ++ +   LE  +  L +   +P+G LR+     LG+ +L   L   +  YP 
Sbjct: 77  DGFTLVDHSAALIAGLEEARQLLLDRRCEPTGVLRMTAPSVLGRVVLTPLLGPMMDRYPG 136

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI     ++ +D+  +  D A+R+  P+  S +I R+L  +      AP YL+    P 
Sbjct: 137 LQIDASFTDRVVDMVDEGFDAAVRI-GPLADSRMIARRLPPLRWVTVVAPSYLQAHGAPH 195

Query: 182 SIQELDKHNLIT-----FGDLIP-----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           ++QEL +H  ++      G  +P     +  E  +W+              +  +S   +
Sbjct: 196 TLQELARHRCLSVYNHYLGFKVPWQFKAEGQEPLDWMPP----------QSISFDSGDPL 245

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           ++  + G G+A + ++ V++   +  L+ ++ ++   S  +   YP     + K+KA   
Sbjct: 246 VEGSLAGLGVAQVMEFAVREHIASARLIPVLTELEGRSRELSLVYPRTRHASPKVKALTQ 305

Query: 289 FIFLKAR 295
            +  +AR
Sbjct: 306 MLLEQAR 312


>gi|187920397|ref|YP_001889428.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718835|gb|ACD20058.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 300

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 3/240 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR GSFT AA +L +SQS++S  +  LE  +G+KL  R  R +  TE G +L 
Sbjct: 9   LLAFVAVAREGSFTRAAARLGMSQSALSHAMRALEERMGVKLLNRTTRSVAATEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +  + ++E   +   ES  +P G +RI  T      ++   L + L  YPDI+++L+
Sbjct: 69  RSIAPRFEEIENELVAAVESRDRPVGTIRITATDYAIDTVIWPRLSKMLPAYPDIKVELV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    DI  D  D  +R    +    +  R      +    +P YL+    P   ++L 
Sbjct: 129 VDYGLADIVADRFDIGVRWGDQVAKDMIAVRIGPDARLAIVGSPEYLEKHPAPKHPKDLV 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN I     +P     + W L    R I          N    ++   + G G+A +P+
Sbjct: 189 NHNCIRL--RLPTLGGIYAWELTKGSRKIQVRVDGQFTFNGAYQMLNAAIDGVGLAFIPE 246


>gi|166712547|ref|ZP_02243754.1| transcriptional regulator, LysR family protein [Xanthomonas oryzae
           pv. oryzicola BLS256]
          Length = 338

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
             EL  H  ++  +      ++ +    +  P GE R   LQ    L+   + +L     
Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239

Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
            G GI +LP+ +  +    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 240 DGVGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293


>gi|157371370|ref|YP_001479359.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323134|gb|ABV42231.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 309

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 126/262 (48%), Gaps = 21/262 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F + A+S SFT AAEQL +++S++ + ++ LE  +G +LF+R  R L+LT  G       
Sbjct: 16  FVITAKSSSFTAAAEQLGITKSAVGKSVARLEERLGTRLFHRSTRKLSLTSDGEAYLTSC 75

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 L++ +  L      P+G +RI      G+NL+   L E +  YP +++ L  ++
Sbjct: 76  LSALEILDSAENTLSRRQENPTGTVRIDMPASFGRNLMMPVLIEMMTRYPALRLALTFND 135

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + ID   +  D  +RL +   +  LI R+L    +   A+P YL+    P  I++L  H 
Sbjct: 136 RLIDPVEEGVDLVLRLGELQSTDELIARRLSRQRLILCASPAYLERHGLPADIEDLKSH- 194

Query: 191 LITFGDLIPKCMEDFNWLATVD---RPIGEPRISCL-----QVNSYLSIMQYCVLGSGIA 242
                     C+  +   A +    R  GE  +  +     Q++   +++Q C+ G GIA
Sbjct: 195 ---------YCVMGYRRGAPLAWRLRKAGEREVKFISATAHQISDGDAMIQACLAGVGIA 245

Query: 243 LLPDYIVKDN---PNLVRIMED 261
             P+ +V  +    +L+ +M D
Sbjct: 246 QFPESMVNSHIAAGSLISLMAD 267


>gi|330980799|gb|EGH78902.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 298

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA + SFT   ++L +S S I + I  LE  +G++LF+R  R + LT +GS     
Sbjct: 9   VFVLVAETRSFTQTGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEGSIFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LE  ++EL  +   P G+LRI  ++ L   L+   + +F+  YPDI++ +   
Sbjct: 69  CRRILSELEAAEMELSNARDLPKGRLRI--SLPLVSGLVMPVIIDFMRTYPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P    +L +H
Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSKRMGSFQLRIVGAPDYFARHAIPRHPGDLSQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +      P      +W   + R  G   +   Q    N+   ++     G GIA LPD
Sbjct: 186 ACLLHK--FPSTGRFEHW--PLRREAGVDDLELPQAMVCNTTEILVDVARAGLGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++     N  L+ +++D    + T    +P +   + +L+ F +F+
Sbjct: 242 FMISSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288


>gi|190894475|ref|YP_001984768.1| putative LysR family transcriptional regulator [Rhizobium etli CIAT
           652]
 gi|218515744|ref|ZP_03512584.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
 gi|190700136|gb|ACE94218.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 301

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 6/245 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V + G F+ AA  L ++ S++S+ I+ LE  +G +L  R  R LTLTE+G   
Sbjct: 6   EMEVFARVVQDGGFSAAARNLDITPSAVSKLIARLEARLGTRLLVRTTRALTLTEEGEAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H    ++  +L          +V+  G+LRI TTI  G   +   + +F+   PD+ + L
Sbjct: 66  HHAALKILQELNDADQAAAGGAVR--GRLRINTTIPFGTMFVAPVIPDFIARNPDLIVDL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D AIR+   +  S LI RKL        A+  YL  C  P+   +L
Sbjct: 124 SFTDGIVDLVAEKTDVAIRMGD-LPDSGLIARKLGQSRRVVCASADYLVRCGSPVKPADL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + H+ +TF     +    F       + + +P    + VN+  ++ Q  + G+GIA +  
Sbjct: 183 EHHDCLTFNFRRARPSWPFRCGG---QDVAQPVKGSIVVNNGETMKQMALAGAGIARVGL 239

Query: 247 YIVKD 251
           + V D
Sbjct: 240 FHVAD 244


>gi|183597888|ref|ZP_02959381.1| hypothetical protein PROSTU_01223 [Providencia stuartii ATCC 25827]
 gi|188022649|gb|EDU60689.1| hypothetical protein PROSTU_01223 [Providencia stuartii ATCC 25827]
          Length = 297

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 23/305 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++  F  V  SGSFT AA+ L +S+S +S  I  LE  + + L  R+ R + LT
Sbjct: 1   MQKNLKQITTFLQVVDSGSFTKAADILGMSRSMVSIDIKQLEIRLNVSLLIRNTRNIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  ++E      Q  +   +G LR ++T + GQ  +   L EF  LYP
Sbjct: 61  EAGKHFYDDFKRIQLEIEEAFERSQNLATNVTGLLRFSSTNEFGQRYILPLLPEFCRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q   ++   D+  +  D AIRL   ++SSSL  RK+    ++  A P  LK+   P
Sbjct: 121 KLRLQYSFNSSLDDLVTEKLDLAIRLGN-LKSSSLKIRKIGEYQIYIVATPELLKHY--P 177

Query: 181 L-SIQELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGE----PRI-SCLQVNSYLSI 231
           +  I +L +   IT   L        NW  T   +   +GE    P I S  + NS   I
Sbjct: 178 VKGINDLAQIPWITHSLL--------NWQDTQYILKNTLGEKYPLPIIKSQYESNSVAVI 229

Query: 232 MQYCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            Q  +   G+A+ PD++V D+ N   L+R++ +   PS  +   YP +     K + F +
Sbjct: 230 HQMVLASLGVAICPDWLVNDDINAGRLIRLLPEFYLPSQNIQLLYPNSTTLPAKTRVFID 289

Query: 289 FIFLK 293
           ++  K
Sbjct: 290 YLVEK 294


>gi|170701312|ref|ZP_02892276.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133762|gb|EDT02126.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 300

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 134/302 (44%), Gaps = 11/302 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ +R+F  V   GSFT A+ QL +  S +SR++  LE ++G++L YR  R +++TE 
Sbjct: 1   MDFESIRIFLRVVERGSFTAASVQLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEG 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     + +     P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYERCLRAEEILLDADRQARALRTDPEGTLRVLVPYSIGLFELEPALAEFHRRYPRV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  S  + R L   H    A+P YL+    P +
Sbjct: 121 QLVLIYDNSPLDLVEHGFDVALRAGM-LTDSGYVARSLGWSHAKLAASPAYLERVGRPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             EL +H+++  G   P         A    D PI    IS    N  +++++    G G
Sbjct: 180 PHELAQHDILYVGRDAPGLTLRLTNAAGDVADVPIRPVLIS----NESITVLRQAASGGG 235

Query: 241 IALLPD-YIVK--DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IAL+   YI +  +   L  ++ D   T    ++  YP       K++ F  F+      
Sbjct: 236 IALISTHYIARRLEKNELEIVLPDWHRTDDVELHALYPRRATLDSKVRIFVEFLTEVFTG 295

Query: 297 WK 298
           W+
Sbjct: 296 WR 297


>gi|307131378|ref|YP_003883394.1| hypothetical protein Dda3937_03126 [Dickeya dadantii 3937]
 gi|306528907|gb|ADM98837.1| Hypothetical transcriptional regulator ycjZ [Dickeya dadantii 3937]
          Length = 297

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 130/270 (48%), Gaps = 8/270 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G +L 
Sbjct: 9   LTAFVVVAEERSFTKAALRLGMAQSALSQIVRRVEERLGLRLLSRTTRSVAPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H L+T    L E   +PSG LRI T     + +L   +K  L   PDI+I++ 
Sbjct: 69  AKLGPMLHDLDTVIGSLGELRDRPSGTLRITTVEHAAKTILMPAMKRLLADNPDIRIEVN 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+  +D+  +  D  IRL   I    +  R    I M   A+P YL     P +  EL 
Sbjct: 129 VDHALVDVVANQFDAGIRLGGDIDKDMIAVRIGPDIPMVVVASPAYLARRPAPTTPAELF 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H+LI F   +P       W L +  R I       L VN+   ++   + G G+A +  
Sbjct: 189 DHSLINF--RLPTSGTLIGWPLMSDGREIRVRGQGQLVVNTIDLLVDAVLDGHGLACIHL 246

Query: 246 DYIVK--DNPNLVRIMEDVI--TPSFTVYF 271
           D + +  DN NL++++  +    P + +Y+
Sbjct: 247 DQVQRFIDNGNLIQVLSGLTRDIPGYHLYY 276


>gi|169634494|ref|YP_001708230.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169153286|emb|CAP02392.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii]
          Length = 298

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 140/292 (47%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L+ FY+   VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+ 
Sbjct: 2   DRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPDI
Sbjct: 62  GQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL   +   D+     DC +R+ + + +SSLI R +  + M   A+  YL++   P  
Sbjct: 122 HLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASTQYLQDYGIPEQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + +L++H LI +   + +   +F +        G   + S L VN+  + +     G GI
Sbjct: 181 LNDLEQHKLINYAGAVGEKQGEFIYQG------GTVMMDSALSVNNTEAYIAAACAGLGI 234

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y V+D      LV ++   I PS  +   YP       +L+ F N++
Sbjct: 235 IQLPYYDVQDKIEQGILVEVLSAYIAPSLPLNILYPNRSYIPKRLEVFMNWV 286


>gi|293608761|ref|ZP_06691064.1| transcriptional regulator [Acinetobacter sp. SH024]
 gi|292829334|gb|EFF87696.1| transcriptional regulator [Acinetobacter sp. SH024]
          Length = 306

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 138/285 (48%), Gaps = 10/285 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++ + GS    A +L+L+  ++SR+++ LE  +G++L  R  R ++LT +G   
Sbjct: 6   ELAFFCLLVKQGSLVATARELNLTPPAVSRRLNQLEERLGVRLLNRTTRRISLTSEGEVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++  +  +  S   P G LR+   +  G++ +   +  F  +YPD+ +QL
Sbjct: 66  FENAVRILKEIDEMERLVSSSRAAPKGVLRVNAPLGFGRSYIAPAISTFAKIYPDVDVQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ I++  +  D +IR  + I  S LI +KL        A+P YLK   +PL+  +L
Sbjct: 126 HLTDRPINLPDEAIDVSIRFGE-IPDSRLIAKKLAANRRLLCASPSYLKTAGQPLTPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I    +I +    + NW  +  + +   ++   L  N     + + + G GI + 
Sbjct: 185 TQHQCI----VIRQNDSAYGNWRLSHGKQVETVKVHGQLSTNDGAVALNWALEGYGILMR 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            ++ V     +  LV+++ D  TP   VY  Y E L  + K+  F
Sbjct: 241 AEWDVAKYLRSGRLVQVLADYETPPADVYAVYLERLNLSPKVAHF 285


>gi|66046176|ref|YP_236017.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256883|gb|AAY37979.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|330969979|gb|EGH70045.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 300

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 123/251 (49%), Gaps = 5/251 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F V ARS SFT AA +L +S+S++ + I+ LE  +G++LF+R  R ++LT  G       
Sbjct: 13  FVVAARSNSFTEAAGRLGISKSAVGKSIARLEARLGVQLFHRSTRRISLTADGDAYFIAC 72

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S    ++   +  L   + +PSG+LRI   +  G+ ++   L E    YP +Q+ +   +
Sbjct: 73  SNALEEIGAAESGLAPGTREPSGRLRIDIPVAFGRRVVAPLLFEIANKYPALQLNMTFSD 132

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             +D   +  D  +R  +   +S L+ R+L        AAP YL     P ++++L++H+
Sbjct: 133 HLVDPIEEGIDLLVRFGELKDTSGLVARRLARQRWAICAAPSYLARFGVPDTLEDLNRHH 192

Query: 191 LITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            I       +  +  +W    D+  +     S  Q+    +++   V G G+  +P  + 
Sbjct: 193 CIVGH----RRGQPLSWRVNEDQETVRYAPPSAHQIGDGEAMILAAVAGVGLCQMPRCLF 248

Query: 250 KDNPNLVRIME 260
           KD+ +  R++E
Sbjct: 249 KDDIDAGRLVE 259


>gi|33596107|ref|NP_883750.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33601505|ref|NP_889065.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33573110|emb|CAE36754.1| LysR-family transcriptional regulator [Bordetella parapertussis]
 gi|33575941|emb|CAE33020.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 305

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 125/276 (45%), Gaps = 24/276 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VAR+ SF+ AAE L + +S++SRQ++ LE  VG++L  R  R + LTE G    
Sbjct: 1   MELFVEVARTLSFSRAAENLAIPKSTLSRQVAELERSVGLRLLSRTTRRVELTEAGQLYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +      ELQ     PSG LR+    D G + L     EF   YP++   L 
Sbjct: 61  ERCQRIVAEARIAHEELQNLVETPSGPLRVNMPADFGTDFLSEAFTEFSRRYPEVTFYLD 120

Query: 128 LDNKD--------IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           L + +         D+S++  D        +  S+ I R L  +  H YA+P YL    E
Sbjct: 121 LASPEHAERVFQTCDVSIEIGD--------LPDSTHIARLLGVLPAHLYASPDYLARHGE 172

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P    +L +H  I F     +      W L + +R +     +   VNS   +     LG
Sbjct: 173 PQHPDDLPRHECIQFRAGTGRVT---RWPLNSGERHVEITPGNRFSVNSVSMVRNLATLG 229

Query: 239 SGIALL-PDYIVKDN---PNLVRIMEDVITPSFTVY 270
           +GIA+L P   V+++     L RI+ D +   F VY
Sbjct: 230 AGIAILAPMGNVREDIESGRLKRILPDWLAGPFPVY 265


>gi|254240252|ref|ZP_04933574.1| hypothetical protein PA2G_00895 [Pseudomonas aeruginosa 2192]
 gi|126193630|gb|EAZ57693.1| hypothetical protein PA2G_00895 [Pseudomonas aeruginosa 2192]
          Length = 295

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L+ F  V  SGS + AAEQ+ L+ S++SR +S LE ++G  L  R  R + LT
Sbjct: 1   MKANSDELQSFVSVVDSGSISAAAEQMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++  ++E  +  L      P+G+LRI        + +  ++ EF  LYP
Sbjct: 61  EEGRYFLDQARQILQQMEALEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ++L  ++  ID+     D AIR+   +  S+L  R L    +H  A+P YL     P
Sbjct: 121 NIQLELNTNDLIIDLLEQRTDVAIRI-GALSDSTLHARPLGASRLHILASPEYLARHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            SI+ L  H L+ F    P+ +  +  + A  DR   +P IS    +S  ++ Q  +   
Sbjct: 180 TSIEGLRGHTLLGFTQ--PEHLNRWPVVHADGDRLEIQPDISA---SSGETLRQLVLSHQ 234

Query: 240 GIALLPDYI----VKDN---PNLVRIMEDVITPSFTVYF 271
           GIA L  ++    ++D    P     M +   P   VY+
Sbjct: 235 GIACLASFMTDRDIQDGRLVPLFAEQMSEYRQPIHAVYY 273


>gi|328544495|ref|YP_004304604.1| transcriptional regulator protein, LysR family protein [polymorphum
           gilvum SL003B-26A1]
 gi|326414237|gb|ADZ71300.1| Probable transcriptional regulator protein, LysR family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 293

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 126/262 (48%), Gaps = 10/262 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    A+ +L L+ ++++R+++GLE  +   L  R   G  LT  
Sbjct: 1   MNWDDVRMFLAVARSGQILAASRRLGLNHATVARRLTGLERTLKTSLLERSTSGCVLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ +   EL ++ +  SG +RI      G   L   L +    +P++
Sbjct: 61  GERFMTHAERMEAEMLSAASELTDTDIDVSGTVRIGAPDGFGVAFLAPRLGDLTARHPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL+   +   +S   AD AI + +P +   LI RKLV   +  YA+  YL     P +
Sbjct: 121 TVQLVPVPRSFSLSRREADIAITVDRP-EHGRLIARKLVDYALGLYASADYLTRRGTPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             EL  H+L+ +       +ED  +  +++    I     +  ++ S L   +    G+G
Sbjct: 180 AAELRGHDLVGY-------VEDLLYSPSLNYGTEIVRDWSARFEIASALGQTEAVRAGAG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDV 262
           I +L  +I + + +LV ++ ++
Sbjct: 233 IGILHAFIARMDASLVPVLPEI 254


>gi|295097247|emb|CBK86337.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 295

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 136/301 (45%), Gaps = 24/301 (7%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V  SGSFT AA +L +S   + + I+ LE+++G +L  R+ R  +LT+ 
Sbjct: 2   DKLRGMETFIAVVESGSFTGAAARLEMSAVMVGKYIAQLESQLGTRLLERNTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         V  ++   +  ++     P+G LR+      G  ++      FL  YP++
Sbjct: 62  GRVYFEEARRVLEQVSIAENAVERLRATPAGTLRVTAPTSFGGCVIAPLTATFLQRYPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L L N+ +D+  +  D AIR+ + I++  L+ + L   +M   AAP YL     P +
Sbjct: 122 RIELDLTNRMVDLVEEGVDLAIRIGE-IRNEDLVAKYLCPYNMVICAAPDYLARHGTPQT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYC 235
             +L  H           C+    W       L  V+  +   R + L+ N    +    
Sbjct: 181 PADLVDH----------LCLSHTVWTARNEWRLPGVEGEVRWKRDAVLRCNDGYGLRMAA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G+G+ L P+ +V +   +  LVR++E        V+  + + L+   KL  F   I L
Sbjct: 231 RAGAGLLLQPEVLVAEELASGRLVRVLEAFTPAPRPVHLLWRQDLRPLPKLTEFIAHILL 290

Query: 293 K 293
           +
Sbjct: 291 R 291


>gi|317053409|ref|YP_004119176.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953148|gb|ADU72620.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 295

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 142/307 (46%), Gaps = 31/307 (10%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT +G 
Sbjct: 4   FTSLTSFVRTAEALSFVEAARSLGISASAVGKNVARLENKLGVRLFNRSTRNVSLTAEGV 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +  +L   + EL  +  +P+GKLR++  + +G  LL   L  F   YPDI++
Sbjct: 64  VLLARCQHILEQLREAEAELTSTVEQPAGKLRVSLPV-IGYRLLLPLLPAFTQRYPDIEL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ ++I  +  D AIR    I  S L  + L   +    A+P YL     P S +
Sbjct: 123 ELDFSDRLVNIIDEGFDVAIR-SGEIADSRLTAKTLGNFNFVLCASPAYLDAHGAPASPE 181

Query: 185 ELDKHNLITF-----GDLIP------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
           EL  H  + F     G + P      +   DFN              S L  N+  ++++
Sbjct: 182 ELSNHKCVLFRFPATGLIQPWELREMRITGDFN------------PASVLTANNIEAVIR 229

Query: 234 YCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G GI+ +PD++V++  N   L  ++        T    +P +   + +++ F +F+
Sbjct: 230 ISTSGLGISYVPDFVVREAFNQGELKEVLAGSCIKQGTFSALWPTSRYLSPRIRCFIDFM 289

Query: 291 FLKARDW 297
              A +W
Sbjct: 290 ---AENW 293


>gi|209517842|ref|ZP_03266676.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501675|gb|EEA01697.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 309

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 129/287 (44%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA + SF  AA QL ++ S I+ +I  LE  V   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVAETSSFAEAARQLGVTSSVITTRIQQLEKFVNAPLFHRSTRHVRLSEVGEAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +EV  ++     +++E    P+G+LRI              L EF   YP IQ+ +I
Sbjct: 67  RECAEVVGRVNELTDQMRELRATPTGRLRIQMLPGFALGHFGAPLAEFNRRYPGIQLDVI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D   +  D A ++  PI + SLI+R+L  +     A P Y+K    P   ++L 
Sbjct: 127 VNDRVVDPIEEGFDVAFQIFPPI-AESLIERRLFKVRRLFCATPAYVKEHGAPQHPRDLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H    +     +      W  T    + E  +   ++ NS   +  Y + G G+  LP 
Sbjct: 186 QHTTALYSGYPSRN----RWTMTHGDEVVEMELPGMIRSNSVHLLRDYALTGGGVVCLPT 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +      + +LV I+ D    +      YP   +   K+KA   F+
Sbjct: 242 LVASAALLDGSLVPILTDYTLSTLNFAAVYPATQRQALKVKALVEFL 288


>gi|330953576|gb|EGH53836.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 302

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 142/290 (48%), Gaps = 10/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGS T A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRMFCQVMESGSLTPASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAELEQVEQGIAGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDVVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQRPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ + +G           W     D+P+       ++ N+   + +  + G GI  
Sbjct: 183 DLHTHDCLPYGH-----SRQAQWRFQGHDKPLTLNVSGRMRANNGELLRESAIAGLGITY 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +IV     + +LVR+++++     T+   YP+  + +  ++AF  F+
Sbjct: 238 LPTFIVGAALRDGSLVRVLDELRPEPLTLSAVYPQHRQASRPVQAFIEFL 287


>gi|312113830|ref|YP_004011426.1| LysR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311218959|gb|ADP70327.1| transcriptional regulator, LysR family [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 304

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 19/291 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA   SFT AA +L  SQSS+S  I  +E  +G++L  R  R +  TE G +L    
Sbjct: 12  FLTVAEERSFTRAAARLGTSQSSLSHMIRRMEERMGVRLLTRTTRSVAPTEAGEQLVATL 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              ++ ++T    +     KP+G +RI ++    + +L   + + +  YPDI++++ +D 
Sbjct: 72  RPAFNDIQTRLDSMSALRQKPAGTIRITSSRHATETILMPAVMQLMADYPDIKVEISVDQ 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D+  +  D  +RL + ++   +  +    + M    +P Y     +P +  +L +H 
Sbjct: 132 RLTDLVAERYDAGVRLGEQVEKDMIAVKIGPELRMTVVGSPAYFAQHPKPATPHDLTQHV 191

Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            I     +P     + W      RP+          N    I+   V G G+A LPD   
Sbjct: 192 CINL--RLPTLGGLYAWEFEKNGRPLNVRVDGQFTCNDVPMIIHAAVNGLGLACLPDDQF 249

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYP-------------EALKNTGKLK 284
           KD      LVR++ED   P    +  YP             EAL+++ +L+
Sbjct: 250 KDLIEEGRLVRVLEDWCPPFPGYHLYYPSRRQPSPAFVLLVEALRSSSRLR 300


>gi|241767027|ref|ZP_04764813.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241362450|gb|EER58386.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 315

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 142/301 (47%), Gaps = 33/301 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF VV R  SF  AA +L  S + +S++I  LE E+G+KL +R  R + +TE+G +
Sbjct: 19  EDLRVFTVVVRKASFGEAATELGASPAYVSKRIRLLEQELGVKLLHRTTRRVAVTEEGER 78

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + +    +   ++    E+  +  +P G+LR++++   G+ ++   +   +  +  +Q++
Sbjct: 79  VFQWAQRILDDMDQLLQEVAVTRREPRGQLRVSSSFGFGRQIVAPAMSRLVAQHAGLQVR 138

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R+L   H    AAP YL     P ++ +
Sbjct: 139 LEVFDRLVDVAGEGFDLDVRVGDEI-APHLIARRLADNHRVLCAAPAYLARHGSPRTLAD 197

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------------LQVNSYLSIMQ 233
           L  H+ +   +               D P G  R+              L  N+   ++Q
Sbjct: 198 LPGHDCLVIKER--------------DHPFGVWRLRGGAMDETVKVRGPLSANNGEMVVQ 243

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
           + V G GIAL   + V  +    R+++  + P +     V+  YP  L  + K++    F
Sbjct: 244 WAVDGRGIALRSLWDVGAHLRAGRLVQ--VLPDWRQEANVWAVYPTRLDRSAKVRVCVEF 301

Query: 290 I 290
           +
Sbjct: 302 L 302


>gi|262194951|ref|YP_003266160.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262078298|gb|ACY14267.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 303

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 142/286 (49%), Gaps = 18/286 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + V+  V  +GSFT AA+ + +S+ ++S +I+ LE  +G++L  R  R L  T+ G++
Sbjct: 6   DDMVVYAAVVEAGSFTRAAKVVGMSKQAVSDRIARLEQHLGVRLLERTTRTLRPTDLGAR 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               +  V   +   + EL      PSG LR++     G+  L   + + +L YPD++I+
Sbjct: 66  YFEHSRAVAAIMSAGERELGRLKESPSGTLRLSIPSLYGRRFLAPVVSDLMLTYPDLRIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--EPLSI 183
            IL ++ +D+  +  D A+R+      SS+I RKL + ++H  A+P +L   R  EP S+
Sbjct: 126 AILTDRYVDLVAEGFDAAVRV-GIRNDSSVIARKLGSSNVHCVASPGFLTKHRVAEPASL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L    +        +  E ++ + T  + + EP    L VN     ++  + G G+A 
Sbjct: 185 TGLPCIGM--------QAKETWS-IGTRSKCVVEP---ALVVNDLEVGLEAAIAGVGVAR 232

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP ++++    +  L  + + ++    T+Y  YP     +  L AF
Sbjct: 233 LPAFLLRPYTASGALSVLFDGLVVARRTLYAVYPSRELRSPALMAF 278


>gi|237730159|ref|ZP_04560640.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908765|gb|EEH94683.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 309

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 131/289 (45%), Gaps = 11/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVELGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+ +    +L   +  P G LRI  +  + QN+L G     L  YP + + L
Sbjct: 66  YQGCRRMLHEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTATMLKEYPGLTVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLAQFGAPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ + +        E         R I E R      N  ++++++   G+GIA +P 
Sbjct: 185 SNHSWLEYSVRPDNEFELIAPEGISTRLIPEGRFVT---NDPMTLVRWLAAGAGIAYVPL 241

Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
             V +  N  R   +++ P +      VY  Y E  K   K++   N++
Sbjct: 242 MWVINEIN--RGEVEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINYL 288


>gi|53719799|ref|YP_108785.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|53724113|ref|YP_103228.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|76809711|ref|YP_334007.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121599157|ref|YP_993406.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124385771|ref|YP_001029158.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126452276|ref|YP_001066785.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167720210|ref|ZP_02403446.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167739212|ref|ZP_02411986.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167816424|ref|ZP_02448104.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167846334|ref|ZP_02471842.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167894914|ref|ZP_02482316.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167903301|ref|ZP_02490506.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167911545|ref|ZP_02498636.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167919553|ref|ZP_02506644.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|242317300|ref|ZP_04816316.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254206516|ref|ZP_04912868.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|52210213|emb|CAH36192.1| putative LysR-family regulatory protein [Burkholderia pseudomallei
           K96243]
 gi|52427536|gb|AAU48129.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76579164|gb|ABA48639.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|121227967|gb|ABM50485.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124293791|gb|ABN03060.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126225918|gb|ABN89458.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|147753959|gb|EDK61024.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|242140539|gb|EES26941.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 300

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 133/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LR++     G+  +   +  F   +PD+ + L
Sbjct: 66  LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ +L
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPGTLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W       +   R+S  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|254418847|ref|ZP_05032571.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
 gi|196185024|gb|EDX80000.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
          Length = 308

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 140/295 (47%), Gaps = 16/295 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  VA + SF+ AA+ + +S++++S+ ++ LE ++   L +R +R  +LT+ G
Sbjct: 6   DLEAMAIFAKVAEAQSFSGAADVMGMSKATVSKAVTRLEQQLKTTLLHRTSRRFSLTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +  + E    E  + SV P G +R+AT +  G   +  +L EFL  +PD+ 
Sbjct: 66  RTLAARAGLMLAEAEGAVSEALDMSVTPRGLVRLATPMSFGMAYVAPSLPEFLATHPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L ++ ID+     DCA+R+   +  SSL  R+L  +     A+P YL     P   
Sbjct: 126 IDLHLSDEVIDLVGGGFDCALRIAA-LPDSSLTARRLRPVERRLVASPDYLAQRGRPTHP 184

Query: 184 QELDKHNLITFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L++H  + +  +    + + + D     +V RP G      L+ N+  ++      G 
Sbjct: 185 HDLERHACLGYAYMSTPDVWRFINDAGEEVSV-RPRGP-----LRANNSDALTASLCAGL 238

Query: 240 GIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+   PD+I    V D  +L  +M +       ++   P       ++ A  +++
Sbjct: 239 GVFPQPDFIYWKDVADG-HLETVMSEWRLAPIALHLVAPGGGPRPARVTAMMDYL 292


>gi|121592593|ref|YP_984489.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120604673|gb|ABM40413.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 305

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 8/274 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++ +F  VA   SFT AAE L + ++S S  +  LET++G +L +R  R + LT+ G 
Sbjct: 4   FDRMHIFVRVAELASFTQAAEALGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    ++   ++  Q   Q  +     G++RI  +  + +N++   L E L  +P ++
Sbjct: 64  AYYERCKDLLADVDELQSMFQHPAGAGLKGRVRIDMSTGMARNVVVPRLPELLAPHPGLE 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L    + +D+  +  DC +R    +  SSL+ R L    +   A+P YL+    P S+
Sbjct: 124 LELSSTERRVDVVREGFDCVLRT-GAVVDSSLVARPLGLARLVNCASPAYLRAHGTPRSL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H L+ F + +      F   A VD   +  P    L VN+  + M  C+ G G+ 
Sbjct: 183 ADLPGHRLVHFVNTLGARSAGFE--AVVDGALVLTPMQGALTVNNAEAYMAGCLAGLGLI 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P   V D     +LV ++  +  P   +   Y
Sbjct: 241 QVPHLGVVDLLARGDLVEVLPQLAAPPMPLTLMY 274


>gi|110678640|ref|YP_681647.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109454756|gb|ABG30961.1| transcriptional regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 292

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 141/300 (47%), Gaps = 20/300 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD++R  + VAR G+ + AAE L +  +++ R +  LE  +G+KLF RHARG T TE G 
Sbjct: 4   WDEVRTAFQVARMGTVSGAAEVLGVHHATVIRHVDALEARLGVKLFQRHARGYTATEAGQ 63

Query: 65  KLHRV---TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            L RV   T + +H+L   +I+ + + V  SG L + + IDL   ++   L  F   YPD
Sbjct: 64  DLLRVAQATDDQFHQL-AGRIKGRGNEV--SGDLVVTSLIDLSSRMVP-VLVAFQKAYPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++ +   +   +    A  AIR    P Q  +++Q +     +  +A   Y+     P
Sbjct: 120 VVVRYLTGERLFRLEYGEAHVAIRAGTVPDQPDNVVQ-EFRHHRVALFATTDYIAEHGRP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVL- 237
             ++    H  +          +  N  A  +R + +  P  S    +S     +  +L 
Sbjct: 179 NGVKSFGDHRFV--------AHDADNSRAPFERWLRQNVPASSIKFRSSDTRAQREAILD 230

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           G+GI  LP +  +++P LV +  +    S  ++      L  T K++ F NF+   A+DW
Sbjct: 231 GAGIGFLPAFEAQNHPELVEVHPEQEGWSGPLWLVTHVDLHRTTKVQTFLNFVKEAAKDW 290


>gi|325522799|gb|EGD01277.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 237

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 118/246 (47%), Gaps = 13/246 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   L   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHLSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRI-GALEDSTLIARPLGAWRMIACASPAYLKRHGAPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
             EL  H  + +G           W   VD   G  R   +Q     N+   +    + G
Sbjct: 180 PAELANHTCLLYGR-----ERRVGWEFRVD---GAARTFDVQGPLVANNGEVVRDAAIAG 231

Query: 239 SGIALL 244
            GIALL
Sbjct: 232 LGIALL 237


>gi|170693160|ref|ZP_02884321.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142158|gb|EDT10325.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 297

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 134/289 (46%), Gaps = 5/289 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A +GSF  A   L ++  ++ + +  LE    ++L  R  R  +LTE G   +
Sbjct: 7   MAVFVKAAETGSFAAAGAALGMTSQAVGKHVRLLEERYRMQLINRSTRRQSLTEAGRAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  ++E  +         P GKLRI   +  G + L   L +++  +P++ + L 
Sbjct: 67  ERSKSVLAEMEAAEALAANLQAAPRGKLRINAPVSFGAHSLVPTLAQYMRQHPEVSVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  +  D  +R+  PI  S LI R +    +   A+P YL     PL  ++L 
Sbjct: 127 LSDRLIDVIDEGYDAVVRI-APIADSRLIARPIGPYRLTICASPAYLAERGTPLRPEDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H    F       + +++ +    R +  P  S   +N+  ++    V G+GI L P  
Sbjct: 186 QHECPGFSYWGRGPLREWHLVGPDGRHV-VPVSSRFSINNGQALRNAAVEGAGIILQPCA 244

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +++++     LVR++ D   P   ++  +    + T KL++F +F+  +
Sbjct: 245 MLREDLAAGRLVRVLPDYEPPPLPIHLLFAPDRRPTPKLRSFIDFVVAR 293


>gi|170699006|ref|ZP_02890064.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136113|gb|EDT04383.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 323

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q  + KPSG LR+     LG+ ++   L  F   YPDI + L 
Sbjct: 67  EHCMKIISEIAEADASFQSGNRKPSGVLRVHMPSSLGRRVVLPALSIFRQRYPDITLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP  I +L 
Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARYGEPQEIADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   + G G+     
Sbjct: 186 DHHAVNF--RASHGARAIPWVFMIDGKPLEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  N    +LV ++ D       +   YP     + K++ F +++
Sbjct: 244 FMVLPNLRDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWL 290


>gi|115360852|ref|YP_777989.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286180|gb|ABI91655.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 310

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 139/288 (48%), Gaps = 11/288 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V   G+F  A+E + ++   +SR I+ LE ++ I+LF R  R ++LTE+G + +  
Sbjct: 14  VFAAVVDMGTFAAASEVIGMTPPGVSRAIARLEKKLNIRLFNRTTRSVSLTEEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE        S+    GKLR+     + + +L   L  F+  +P+++I+LI  
Sbjct: 74  VMPHLAGLEEAAAAAAGSASAVRGKLRVNLDPVVYRTILGPQLDAFMDAHPELEIELIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187
           +   D+ MD  D A+R  +P ++S+LI RKL+   +   A+P Y+     P   ++L+  
Sbjct: 134 DSLGDLVMDGFDIAVRFGEP-RASTLIARKLLDTGIVTVASPAYIARWGRPAKPEDLESR 192

Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242
            H  I F +  P+  + F W       R + + R   L VN   +++  C+ GSGIA   
Sbjct: 193 SHRCIEFRN--PETGKPFAWEFHRRRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LL    +  N  L+ +  +     F +Y  YP       K +AF +F+
Sbjct: 250 LLGAEPLIANGQLINLFPEWADERFPLYAYYPSRHHLPAKTRAFLDFV 297


>gi|311108694|ref|YP_003981547.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763383|gb|ADP18832.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           177 [Achromobacter xylosoxidans A8]
          Length = 299

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 140/289 (48%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA   SF  A  QL +S S+IS+ ++ LE ++G++LF R  R + LT +G+   
Sbjct: 7   MTIFVLVAEVRSFAAAGRQLGVSASAISKGVARLEEKLGVRLFQRSTRSVGLTPEGTLFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   + EL  ++  P G+LR+  ++ L   L+   +  F   YP I++ L 
Sbjct: 67  ERCRRILAEIAAAENELTSTTASPKGRLRV--SLPLVSGLMLPAISAFAHRYPQIELDLD 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  +R  + +  S L+ ++L +       AP Y      PL  +EL 
Sbjct: 125 FSDRLVDVIAEGFDAVVRTGE-LSDSRLLSKRLGSSRFVYVGAPGYFAQRGTPLHPEELT 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  +         +E + ++    RP  E  I   + +  N   +++   V G GIA L
Sbjct: 184 QHACLMHRFPTTGTLEKWPFV----RPPSETVIRLTASMTSNHVETLLHMAVQGHGIACL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD+ V+   ++  L  +++     S T +  +P   + + +++AF +F+
Sbjct: 240 PDFAVQPALESGALQIVLDRWAGSSSTFWVLWPSNRQLSPRVRAFVDFM 288


>gi|300715206|ref|YP_003740009.1| transcriptional activator, LysR-family [Erwinia billingiae Eb661]
 gi|299061042|emb|CAX58149.1| transcriptional activator, LysR-family [Erwinia billingiae Eb661]
          Length = 297

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 20/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA++  L +SS+S++IS LE  +G++L  R  R L LT  G +  
Sbjct: 8   MALFALVAECGSFTGAAKKAGLPKSSVSQRISQLEQALGLRLINRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + ++     PSG+LRI +   +G  LL      F   YPD+ +++ 
Sbjct: 68  VHCQEMMQASERANVAIERLRDNPSGRLRITSPAGIGATLLARLNAAFQQEYPDVTLEVS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  DI ++  D A+R  +P Q SSLI R++        A+  YL+        Q+L 
Sbjct: 128 VSDEVRDIVLEGYDVALRTGQP-QDSSLIGRRIGYCERLLVASKGYLEQYEAITHPQQLA 186

Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG-SGIA 242
           +H  I        L+ +  E + WL           +    +   L   + C LG +GI 
Sbjct: 187 EHRCIAHRAWSEWLLNRGEEYYRWL-----------LPPTHMTDNLVYARECALGDAGIT 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LLP ++ ++      LV+++ D       ++  YP    N+  +  F ++
Sbjct: 236 LLPRFLTQEILPGGGLVQVLPDWQVEGNELWLVYPSRKLNSPAVARFIDY 285


>gi|323528229|ref|YP_004230381.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385231|gb|ADX57321.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 349

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 9/285 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH-RV 69
           F  VA  GSF  A ++L + +SS+SR +  LE ++ ++LF R  R  +LT +G   + R 
Sbjct: 42  FLAVANEGSFARAGDRLGIGRSSVSRNVQKLEAQLEVRLFLRTTRSTSLTREGELFYERC 101

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V   +E      +  S  P G LRIA+T   G+ ++   L+ F   +P I ++L+L+
Sbjct: 102 QPGVERIVEALDGMRELRSGPPRGHLRIASTSGFGRRIVAPLLRGFHSRFPGITLELLLN 161

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            +  D + D  D + R  + ++ S ++ R+L+ + M   A+P Y +    P  I EL +H
Sbjct: 162 ERPADFTSDRVDVSFREGR-MEDSGIVARQLIAMQMIVCASPAYARRHGLPRRIDELAQH 220

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDYI 248
             I F     +  E   W   VD      + +     N    I+Q  + G GIA +P Y 
Sbjct: 221 RCINFRMASGRIKE---WEFKVDDHTQRHQPAAQHTFNDADLILQAVLDGVGIAQVPAYQ 277

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V D      LV  +          Y CY        +++ F +++
Sbjct: 278 VCDLLGERRLVSCLGQHAPDDSGHYICYLSRKHLPARIRVFVDYM 322


>gi|154246137|ref|YP_001417095.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160222|gb|ABS67438.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 307

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 133/293 (45%), Gaps = 11/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW  L  F  VAR+G  T AA +L +  S++SR+I  LE  +G KLF R   G  LT  
Sbjct: 6   FDWSDLTFFLAVARAGRLTAAAARLKVEHSTVSRRIGALEEALGAKLFDRRPHGYGLTAA 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +       Q E+  + +  +G +RI      G   L   +     L+P++
Sbjct: 66  GERLMAAAEGMETLALAAQGEIGGADLGVAGTVRIGAPDGFGTFFLAPRISALADLHPEL 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI L +P +   L  RKL    +  YA+  YL+      S
Sbjct: 126 DIQLLAMPRLFSLSKREADIAISLSRP-KEGRLHARKLTDYRLGLYASRAYLERHGPIES 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +H  I + D +    E  +++  V + I   R+  L+ +S ++ +     G+G+ 
Sbjct: 185 RAGLQRHPFIGYVDDLIYAPE-LDYVPLVAKDI---RVR-LKSSSLVAQLTATQAGAGVC 239

Query: 243 LLP----DYIVKDNPN-LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP    D    D PN LV I+   +  + T +       ++  +++   +FI
Sbjct: 240 VLPCFMADLFAGDRPNALVPILPGDVGLTRTFWLLTHTDTRDLARIRVAADFI 292


>gi|146292056|ref|YP_001182480.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145563746|gb|ABP74681.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
 gi|319425350|gb|ADV53424.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 299

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 134/283 (47%), Gaps = 21/283 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +++  D +R+F+VVA+ GSF  AAE L +  S++SR+I+ LE  +G++L +R A  + LT
Sbjct: 3   LNYSLDDMRLFWVVAQQGSFKLAAEHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +       ++ +L     EL     +  GKLRI+  I+     L  +L  F L YP
Sbjct: 63  ATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYLWLGESLNAFQLRYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I I L L N +ID+S +  D A R+ +P +    I R L TI      A          
Sbjct: 123 NIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISF-VLCASSTATQWHSL 180

Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQ 233
            SI+EL++H +I      T+        +DF +         EPR +  L V+      Q
Sbjct: 181 QSIEELEQHPVIIAKPAKTWRLQHNITGQDFEF---------EPRGNIKLAVDDMAIASQ 231

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
             + G GI LLP  +  +   +  L++I+ +      T Y  Y
Sbjct: 232 AVMAGLGIGLLPISMASERIQSGKLIQILPEWKGAPRTAYLMY 274


>gi|325927386|ref|ZP_08188634.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|325542207|gb|EGD13701.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 333

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 63  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 123 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
             EL  H  ++  +      ++ +    +  P GE R   LQ    L+   + +L     
Sbjct: 183 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 234

Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
            G GI +LP+ +  +    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 235 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 288


>gi|21242405|ref|NP_641987.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107845|gb|AAM36523.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 333

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 63  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 123 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
             EL  H  ++  +      ++ +    +  P GE R   LQ    L+   + +L     
Sbjct: 183 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 234

Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
            G GI +LP+ +  +    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 235 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 288


>gi|114046121|ref|YP_736671.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113887563|gb|ABI41614.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 300

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 17/296 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG +  
Sbjct: 7   MRSFIEVANCGSFTKAAEHLDLSRLQVSRHIQEIEQWLSLRLLHRTTRCVSLTLQGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V  ++   +      + +  G +RIAT + LGQ+ L   +  F+ L+P + IQL+
Sbjct: 67  QYCQRVLSEVAAMESRAHSHNTELVGSIRIATPVGLGQHSLFDVVDRFIKLHPKVNIQLL 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185
           + +    +  +  D A+R   +P    +LI RKL++I     AAP YL    EPL++  +
Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARKLMSIDAVLCAAPSYLAQA-EPLTVPND 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN      LI    + +  L      + +P +  L  N    ++   + G GIA LP
Sbjct: 184 LLRHNC-----LIHSSQQHWQLLKEQQSELIKP-MGNLMANEMGVLVSAALRGHGIAYLP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +      +  L  ++ +   P  T++  Y   L  + +    R FI   A+ W+
Sbjct: 238 CDLANQYLASGQLQEVLPEYTAPGQTLWAVY---LSRSYQQALVRAFIDFTAQQWQ 290


>gi|115352754|ref|YP_774593.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282742|gb|ABI88259.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 323

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q  + KPSG LR+     LG+ ++   L  F   YPDI + L 
Sbjct: 67  EHCMKIISEIAEADASFQSGNRKPSGVLRVHMPSSLGRRVVLPALSIFRQRYPDITLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP  I +L 
Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPQEIADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   + G G+     
Sbjct: 186 DHHAVNF--RASHGARAIPWVFMIDGKPLEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  N    +LV ++ D       +   YP     + K++ F +++
Sbjct: 244 FMVLPNLRDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWL 290


>gi|257486797|ref|ZP_05640838.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|330988687|gb|EGH86790.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331010267|gb|EGH90323.1| regulatory protein LysR, substrate-binding protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 297

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F +VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLLVARDQSFTKAATKLGVTPSALSHSMRGLEERMGLRLLARTTRNVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q+
Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W    D      R++     NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNLRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           +PD + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289


>gi|254294139|ref|YP_003060162.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254042670|gb|ACT59465.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 294

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 143/288 (49%), Gaps = 7/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD L++  +V+R    T A+++L    ++ISR++  LETE+G+ LF R  RG  LT +
Sbjct: 1   MNWDDLKLLLLVSRYPILTEASQKLGQDATTISRRLKKLETEIGLTLFERTRRGHILTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             ++    +E   +   +     ++  + +G +R+ATT  LG   +   +  F  L+P+I
Sbjct: 61  ALEI-AAQAEAMEQSILSIATYAQTEQQIAGHVRLATTEGLGTYFIAPEIANFTQLHPNI 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + LI      +IS   AD AI L +P Q   L  RKL    +  Y+   YL       S
Sbjct: 120 ALDLIAIPGYANISKREADLAIVLTRP-QKGRLKVRKLTDYQLALYSTQKYLDEFSNIKS 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H LI + D +    ++ N+   +  P  +P +      S ++ +Q    G+GI+
Sbjct: 179 KSDLSGHTLIGYMDELLYS-DELNYYQEI-FPDLKPSLCS---PSIVAQLQMTRSGAGIS 233

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP ++ + +P+LVRI+ + I  + + +    +   +  +++A   F+
Sbjct: 234 ILPRFMAEKHPDLVRILPNEINITRSFWLTTHQDAHSLARIQAVSEFL 281


>gi|239833393|ref|ZP_04681721.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239821456|gb|EEQ93025.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 303

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 135/292 (46%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT A+  L++ +++IS  I GLE  +G KL  R  R + +T  G+  +
Sbjct: 7   MRAFLRVVETGNFTRASASLNMPKATISNLIQGLEAHLGTKLLNRTTRRVLVTPDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L      L  +   P G+LR+     +   ++   L EF   YPDIQI L 
Sbjct: 67  ERAARLLADLAELDGSLSSAQTLPKGRLRVEMAGAVANLIIIPALMEFHQRYPDIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D   +  DCAIR+ + +   SLI R++  +H  A A+  YL  C  PL   +L 
Sbjct: 127 VSDRPVDYVAENVDCAIRIGE-LADQSLIARRIGDMHFIACASAEYLDRCSTPLHPSDLS 185

Query: 188 KHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   +      + G  +P           V+   G   ++  +  +YL+  +    G G+
Sbjct: 186 RDCTVVGYFRPSTGQQMPFRFRKGTEEIEVN---GRYVVAANESTTYLAAAR---AGLGV 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P ++VKD+     L  ++++       +Y  YP     + +L+ F +++
Sbjct: 240 VQAPLFMVKDDIASGTLRPVLQEWEIEPTPIYLVYPPNRHLSNRLRVFADWV 291


>gi|317407127|gb|EFV87129.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 294

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 136/281 (48%), Gaps = 9/281 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA + SF  A   L +S S++ + ++ +E  + ++LF+R  R +TLT +G K    
Sbjct: 9   VFVLVADTRSFAEAGRTLGVSPSAVGKSVARMEAHLKVRLFHRSTRHITLTPEGEKFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++E  ++EL E++  PSG+LR+  ++     L +  +  F+  YP +++ L   
Sbjct: 69  CRRILCEVEAAELELSEAAGTPSGRLRV--SLPRYSRLFEPAIATFMKQYPQVRLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  + +Q S L +R+L        A+P YL     P    +L +H
Sbjct: 127 DRMVDVIGEGYDAVVRSGE-MQDSGLKRRRLGQFRRILAASPDYLARHGTPRRASDLQRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPDYI 248
             + +       +E +     V  P   P +    V + +    +  LG  GI  LPD+ 
Sbjct: 186 CCLHYRYPSTGKLEQWPLKTAVGAPA--PELPLTLVCNSVETRIFLALGDLGIVCLPDFT 243

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++    +  LV +M++    + T++  +P +   + KL+ F
Sbjct: 244 IRQELASGRLVTVMDERTRGNATMWALWPASRHPSPKLRVF 284


>gi|171322714|ref|ZP_02911464.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171091943|gb|EDT37406.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 320

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 14/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + +
Sbjct: 66  YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVIVDM 125

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +
Sbjct: 126 TLSDRVVDLIEEGYDIAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIAD 185

Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  HN +   +   ++   + D    + V+          L VN    +    + G+GIA
Sbjct: 186 LAHHNYLRRDSNSTMLDSLVIDAAAASRVNLN------GNLIVNHLEGLRAAVLAGAGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LL   +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 240 LLGTEVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|91777464|ref|YP_552672.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690124|gb|ABE33322.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 295

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 134/290 (46%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F   A SGSF  AA    +S     R +  LE  VG  L  R  R  +LTE G   +
Sbjct: 7   MAIFVKAAESGSFAAAALAFGISSQMAGRHVIALEERVGAPLLARTTRRQSLTEIGQIFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E  +    + S  P G+LR+   +  G   L   +  +L   P++Q+ L 
Sbjct: 67  ERCKALLADAEAAESVAMDFSASPRGRLRVTAPVTFGSCCLAPLITRYLRANPEVQVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  + AIRL  P+  SS+I + L+   + A A+P YLK   EP + + L 
Sbjct: 127 LTDRFVDLVDEGYEVAIRL-GPLSDSSMIAKPLMPYRLLACASPAYLKEHGEPRTPEALA 185

Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
           +H  + F       +  +N W+    R  G+  ++     Q N   +++   + G GIAL
Sbjct: 186 RHECLGFSF---TSLPPYNEWVFGSAR--GKHAVTVTGRFQANDTKALIAAAIDGFGIAL 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+  +KD+     LVR++     P   ++  +  A + T KL+AF + +
Sbjct: 241 APEIAIKDDIAAGRLVRLLRKYEAPERPMHALF-TARRPTPKLRAFIDLV 289


>gi|260549462|ref|ZP_05823681.1| LysR family transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407571|gb|EEX01045.1| LysR family transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 311

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 128/264 (48%), Gaps = 16/264 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A  GSF+ AA  L L+ +++SR ++ LE  +G++LF+R  R LTLTE G   
Sbjct: 6   NLESFIRSAEHGSFSAAARHLALTPAAVSRNVAQLEQNLGVRLFHRSTRNLTLTEAGEHF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +  + ++TT  E    S  P G L+I+ +   G   +   + +F+  YPDI+++ 
Sbjct: 66  FTSIRDNLNNIQTTISEFNTDSSHPKGTLKISLSAGFGVEYILPLMPDFMNKYPDIKLEW 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L NK +++  D  D AI     +    +I+R L  +HM   A+P++LKN   P   +++
Sbjct: 126 HLSNKQVNLITDNFDAAIGSGFKL-GQGIIKRSLSPLHMIIVASPNFLKNKILPSHPEDI 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSG 240
              + I         + ++ ++       GE   + L +N  L      ++ Q  VLG G
Sbjct: 185 SNWDGIIMRSPQTGKLHEYKFIGPDQ---GE---AYLNLNEKLIADDPSALHQGAVLGMG 238

Query: 241 IALLPDYIVK---DNPNLVRIMED 261
           IA +     K   +N  L+RI+ +
Sbjct: 239 IAAISTAHAKSYIENGTLIRILPE 262


>gi|171317263|ref|ZP_02906461.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097582|gb|EDT42418.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 323

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R++  +  +  F+ AA +L  + S++SRQ+  LE  +G++L  R+ R  TLT  G + +
Sbjct: 30  MRIYRCLVEAKGFSAAAARLDTTHSTVSRQLKLLEASLGVQLLNRNTRNFTLTAAGERYY 89

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  ++E    ++ ES  KPSG LR++  + +G   +   L  F   +PDI++ + 
Sbjct: 90  AACMEILERVEAAAEDVAESPRKPSGTLRVSMPLSIGTLEMPDWLPSFRRSFPDIRLDVS 149

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  ++  +  D A+R+   +  S L+ R L        A+P Y+     P +  +L 
Sbjct: 150 CSDRFSNLVGEGFDVALRISGDLPDSELMARTLAVSDEILVASPDYIARHGMPRTPAQLA 209

Query: 188 KHNLITFGDLIPKCMED-FNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H L+ +        ED  NW  T  R   +       L++++  +I    V G GI   
Sbjct: 210 THELLPY-----SGREDGGNWRLTPSRGTAVSVKLDGYLRIDTITAIHASAVTGLGIGAF 264

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFI 290
               V+ +    R++   + P +T+     Y  YP++   + K++AF +F+
Sbjct: 265 THLTVRGDIERGRLVH--VLPRYTLAKRKYYALYPKSRHVSPKVRAFIDFV 313


>gi|16126591|ref|NP_421155.1| LysR family transcriptional regulator [Caulobacter crescentus CB15]
 gi|221235373|ref|YP_002517810.1| LysR family transcriptional regulator [Caulobacter crescentus
           NA1000]
 gi|13423879|gb|AAK24323.1| transcriptional regulator, LysR family [Caulobacter crescentus
           CB15]
 gi|220964546|gb|ACL95902.1| transcriptional regulator, LysR family [Caulobacter crescentus
           NA1000]
          Length = 302

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 121/274 (44%), Gaps = 13/274 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW++ R F V A  GSF+ AA  L LSQ ++SRQI  LE E G+ LF R  RGL LT
Sbjct: 6   LRFDWNRARAFLVAAEEGSFSAAARALGLSQPTLSRQIDALEAEWGVVLFERAGRGLALT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G ++ +    +        + +   +   +G + I+ +     +LL   + E    YP
Sbjct: 66  SGGLEVLQAMRGMGEAASLVSLAVSGQAEAIAGPIAISASEVNAAHLLPPIVSELRATYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+++  N   D+    AD AIR     Q   L+ RK+   H   YA P Y+    +P
Sbjct: 126 GLEIEVVATNAPSDLRRREADIAIRNMVSTQ-PELVCRKIRDDHAFMYATPDYIAKLGQP 184

Query: 181 LSIQELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +   L     + F   D++ + +           P+       +  +++L   +    G
Sbjct: 185 QTFAALADAEFLGFAATDVLIRALNGLG------VPVSSRNFPVV-CDNHLVQWELVKRG 237

Query: 239 SGIALLPDYIVKDNPNLVRI---MEDVITPSFTV 269
            GI L+   I    P + R+   M  +I P + V
Sbjct: 238 VGIGLITADIGDAEPAVRRVLPEMAPIIVPMWLV 271


>gi|307300374|ref|ZP_07580154.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306904540|gb|EFN35124.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 318

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 141/302 (46%), Gaps = 26/302 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F      G F+ AA    ++ S++S+ +  LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEIFAKAVELGGFSAAARHYRMTPSAVSKLVLRLEERLGVRLVNRSTRKLQLTPEGHAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  T  +   ++  +     +   P G++R+      G ++L   + EF   +P + + +
Sbjct: 71  YERTVRILADIDEAE-RSASAGESPVGRVRLNVNASFGTHVLMPLVPEFRAHFPAVSLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +  +D+    AD AIR   P++SS+LI RKL    M   AAP Y++    P S++EL
Sbjct: 130 VMTDAVVDLMEARADVAIRA-GPLKSSTLIARKLGATRMMIVAAPSYIERNGMPSSLEEL 188

Query: 187 DKHNLITFGDLIPKCMEDF--NWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240
             H  + F      C       W    D   GE    P    +QV+    + Q  + G+G
Sbjct: 189 KGHERLGF------CYARAVDGWPLRTD---GETVVLPASGAVQVSDGEGLRQLALAGAG 239

Query: 241 IALLPDYIVKDNPN---LVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A L ++ V+++ +   LV ++ED+    +     VY     AL    +++A  +F+   
Sbjct: 240 LARLAEFTVREDVSARRLVPVLEDLNPGDLEEVHAVYLGQGGALP--ARVRAVLDFLARH 297

Query: 294 AR 295
           AR
Sbjct: 298 AR 299


>gi|254476031|ref|ZP_05089417.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214030274|gb|EEB71109.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 292

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 6/283 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DW+ +R F   A SGS + AA +L L+Q ++SRQ++ LETE+G+ LF R  R L LT+
Sbjct: 3   SPDWNHIRAFLATADSGSLSAAARKLGLTQPTLSRQVAALETELGLLLFERVGRSLELTQ 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L   +  +    +   +     +    G +RI  +  +   +L   L++     P 
Sbjct: 63  AGRELLDHSRTMGQAAQALSLSATGQAQSIDGTIRITASDMMSAYVLPEVLQQLQRRAPR 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I ++  N   D+    AD AIR  +P Q   LI R +     H YA+  YL     P 
Sbjct: 123 LTIDVVATNDIRDLMRREADIAIRHVRPDQ-PDLIARLVQEASGHFYASRGYLDKRGRPE 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ ++FGD   + +E   +L  +  P+   +   +  +S L   +    G GI
Sbjct: 182 RYSDLADHDFVSFGD-TDRMIE---YLVPMGIPVTAEQFR-IGSSSGLVAWELVKQGFGI 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
             + D +    P + R+++D    +F ++      L  + +++
Sbjct: 237 TPMSDDVAAKCPEVERVLQDAGPITFPIWLTTHRELHTSRRIR 279


>gi|71281974|ref|YP_268199.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147714|gb|AAZ28187.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 300

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  V  +GS + A+    +  SSISRQ++ LE E+G+ L  R +R + LTE G   
Sbjct: 8   RLHYFNCVVETGSISKASRIFDVQPSSISRQLTALEKELGVLLLKRTSRNIGLTEAGQTY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++ + ++   L+  +  + +   KP G L+++  +   +  +   +  F  LYP+I ++L
Sbjct: 68  YKYSQKIVSDLDEARCAVNDLQQKPKGNLKVSMAVGFAECCILPMIPTFTKLYPEINLEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +  + +D+  +  D AIR  + ++ S+LI  KL + +    A+P Y+     P S    
Sbjct: 128 EMTGRVVDLVEENVDVAIRTGR-LRDSNLIALKLTSNNFLLCASPQYITEHGTPKS---- 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
              NL  F  +  +     +W    D+P      S L V S     Q  +  +G+AL+P 
Sbjct: 183 -PFNLTDFECIRYEYAGWRDWYLMNDKPTKLTIKSGLTVRSINGQKQLILNHAGLALMPK 241

Query: 247 YIV---KDNPNLVRIME-DVITPSFTVYFCYPEALKN---TGKLKAFRNFI 290
           + V    DN  LV+++E ++ +P  ++   Y   LK    + K++ F +FI
Sbjct: 242 WSVINELDNGTLVQVLEQNIFSPYESMSSTYAIYLKRELISPKVRVFIDFI 292


>gi|330979507|gb|EGH78110.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 301

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 130/293 (44%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+
Sbjct: 4   FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLTEFGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    EV   +  ++   +++   P+G LRI   +  G  +L   L EF   +P++++
Sbjct: 64  AYYERCLEVLGLVAESEQLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPEVKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L N+ +D+  +  D AIRL    +SS LI R L    +   AAP YL     P   +
Sbjct: 124 DLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTPTHPE 183

Query: 185 ELDKHNLITFGDLIPKCME----DFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L +HN + F    P   E       W  T  D  +       +  N+   + Q    G 
Sbjct: 184 DLRQHNCLAFA--YPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARAGM 241

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+ +LPD +V+ +     LV +  D   P       Y +      KL++F  +
Sbjct: 242 GVVMLPDALVQRDLQEGRLVALFPDYHLPRRPTNLLYVQDRYRLPKLRSFVEY 294


>gi|298488168|ref|ZP_07006205.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298157447|gb|EFH98530.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 297

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLQVARDQSFTKAATRLGVTPSALSHTMRGLEERMGLRLLARTTRNVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q+
Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W    D      R+S     NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVSGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           +PD + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289


>gi|260901460|ref|ZP_05909855.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308107669|gb|EFO45209.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
          Length = 300

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 18/295 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 5   DDYIIFYHLVEQGSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGQS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  VY  + T +  +       SG ++I      G+ +L G + EF   YPDI I 
Sbjct: 65  FFVHAKAVYQAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDINID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P    E
Sbjct: 125 MELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQPSE 183

Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L KHN + +              ED  +  TVD          L  N+  ++    +LG 
Sbjct: 184 LTKHNCLVYSYQETGAREWAFKSEDKMYQVTVD--------GNLCTNNSSALRNVALLGQ 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+  +P  +V ++    +L+++ ++       +Y  YP   +   K+K F + ++
Sbjct: 236 GVIYVPRVLVYEDLKQGSLIQLFKEETAKCLGIYAVYPYTRQQPEKIKIFIDHLY 290


>gi|119899157|ref|YP_934370.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119671570|emb|CAL95483.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 313

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 130/272 (47%), Gaps = 8/272 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  +GSF  A + L +S++++SR +  LE  +G +L  R  R L+LTE G   
Sbjct: 6   ELSVFVAVVDAGSFVGAGDALRISKAAVSRCVQDLEARLGARLLQRTTRRLSLTEAGRAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+     +   + +P G+L++   +  G   L     +FL  YP I++ +
Sbjct: 66  YARARQLLADLDEADGAVGAVTGQPVGRLQVNAPLSFGVRYLAPLWGDFLARYPGIELDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D A+R+ + +Q SSL+ R+L T  +   AAP YL     P  + ++
Sbjct: 126 SLSDRMVDLVDEGYDLALRITR-LQDSSLVSRQLATTRIVMCAAPAYLAQHPAPQRLADI 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H +I +       +  F     V+  +   PR    + N+  +     + G GI + P
Sbjct: 185 AHHAVIAYSYAQSGDVWRFVGPQGVEEEVQTRPR---FRANNGDTCRAAALAGQGIVMQP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            ++V D+     L+R++ +       ++  YP
Sbjct: 242 TFLVGDDLAAGRLLRVLPEYGGVEVGIHAVYP 273


>gi|260775854|ref|ZP_05884750.1| transcriptional regulators LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608270|gb|EEX34439.1| transcriptional regulators LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 301

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 9/245 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSF+  A++ + +Q++IS++++GLE ++G KL  R +R  TLTE G    
Sbjct: 7   MRSFIRVVETGSFSAVAKEQNTNQATISKRVAGLEKKLGTKLLVRGSRRHTLTEAGQAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +   ++  + E +  +  P G L+I      G   +   + EFL  YPDI + + 
Sbjct: 67  ERVSHIVAAIDEAEAEARSLTATPKGHLKITVPTMFGSLYVAPVISEFLASYPDIDLDIK 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D   + +  +  D AIRL   +Q SS++ + L    +   A+P YL+    P  ++EL+
Sbjct: 127 FDENLVALVKEGIDVAIRLGD-LQDSSMMAKTLGYDELIMVASPTYLERHPAPTRLEELN 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            HN + +  L PK      W  T +R  G   I      Q ++ + + +  +  +GIAL+
Sbjct: 186 AHNCLIY-SLSPK--RGTVW--TFNRTPGASEIPVSGNFQCDNGIGLKEMLLAHAGIALM 240

Query: 245 PDYIV 249
           P ++V
Sbjct: 241 PRWMV 245


>gi|78047252|ref|YP_363427.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035682|emb|CAJ23373.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 338

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
             EL  H  ++  +      ++ +    +  P GE R   LQ    L+   + +L     
Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239

Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
            G GI +LP+ +  +    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 240 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293


>gi|311695609|gb|ADP98482.1| transcriptional regulator, LysR family protein [marine bacterium
           HP15]
          Length = 296

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L     V  SGSF+ AAEQL +S + +SR ++ LE  +   L  R  R + LTE+G  
Sbjct: 8   DDLHFLLSVVDSGSFSGAAEQLEVSVTRVSRAVTRLEASLNTTLLNRTTRKVALTEEGHL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      LE  + +L     +P+G+LR+        + +  +++EF   YPDI+++
Sbjct: 68  FVETVRGGLAALEEAEEQLAIRKQRPAGRLRVDAANPFLLHQIVPHVREFRAAYPDIELE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLS 182
           L   ++ +D+     D AIR+  P+  S+L  R L    +   A+P YLK   +C  P  
Sbjct: 128 LTASDQIVDLLERRIDIAIRI-GPLDDSTLHARVLGRSPLSVVASPEYLKRKGDCDSPAD 186

Query: 183 IQELDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEP-RISCLQVN--SYLS--- 230
           +QE   H++I F    P+ +      E      T+    GE  R  CLQ N  +YLS   
Sbjct: 187 LQE---HDIIGF--TAPESLNFWHLGEGMRVRPTIRASSGEAVRQLCLQGNGIAYLSRFM 241

Query: 231 IMQYCVLGSGIALLPDYIVKDNP 253
           I +    GS + +L DY+ + NP
Sbjct: 242 IAEDLGKGSLVEMLDDYVARPNP 264


>gi|238028800|ref|YP_002913031.1| LysR family regulatory protein [Burkholderia glumae BGR1]
 gi|237877994|gb|ACR30327.1| LysR family regulatory protein [Burkholderia glumae BGR1]
          Length = 322

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 147/290 (50%), Gaps = 10/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +S+ P G+LR+ +    G   +   + ++   Y D+ +++
Sbjct: 66  YERLVQALTELDEAGQAVGAASIVPQGRLRVTSLSAFGLRHVMSAVTDYAARYADVTVEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P ++ +
Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPFGLKSSSLVARQIATAHILLVASPAYLEEHGMPAALAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244
           L++HN +   D  P  ++   + +     +    +S   + ++L  ++  VL GSGIA+L
Sbjct: 186 LERHNYLRR-DTGPSSIDSAAFESAAASRV---TLSGNLIVNHLEALRLAVLNGSGIAML 241

Query: 245 PDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
              +V D+     LV ++ + + P    +Y  Y      + K+++F +F+
Sbjct: 242 GTEVVGDDIEAGRLVPLLLEAMPPRELPIYAVYASRRHVSAKVRSFVDFL 291


>gi|120600019|ref|YP_964593.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120560112|gb|ABM26039.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
          Length = 299

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 134/283 (47%), Gaps = 21/283 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +++  D +R+F+VVA+ GSF  AAE L +  S++SR+I+ LE  +G++L +R A  + LT
Sbjct: 3   LNYSLDDMRLFWVVAQQGSFKLAAEHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +       ++ +L     EL     +  GKLRI+  I+     L  +L  F L YP
Sbjct: 63  ATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYLWLGESLNAFQLRYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I I L L N +ID+S +  D A R+ +P +    I R L TI      A          
Sbjct: 123 NIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISF-VLCASSSATQWHSL 180

Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQ 233
            SI+EL++H +I      T+        +DF +         EPR +  L V+      Q
Sbjct: 181 QSIEELEQHPVIIAKPAKTWRLQHNITGQDFEF---------EPRGNIKLAVDDMAIASQ 231

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
             + G GI LLP  +  +   +  L++I+ +      T Y  Y
Sbjct: 232 AVMAGLGIGLLPISMASERIQSGKLIQILPEWKGAPRTAYLMY 274


>gi|311109283|ref|YP_003982136.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763972|gb|ADP19421.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           200 [Achromobacter xylosoxidans A8]
          Length = 296

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 139/303 (45%), Gaps = 27/303 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  +G++L  R  R + LT
Sbjct: 1   MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERSIGMRLLNRSTRKIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +  +      +L + +V+P G+LRI+    L Q  L   + EF   +P
Sbjct: 61  EAGAIYFERCRHIVEEARIAHDQLLDMAVQPKGRLRISLPTSLAQLFLPAVISEFREQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI+    L  + ID   +  D  +R  ++P   SSLI RK+V +    YA+P YL    E
Sbjct: 121 DIECDFDLSMRPIDPISNPFDLILRFGQQP--DSSLISRKIVLMAHQLYASPEYLARHGE 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           P    +L  H       L P   E+  F  L + D      ++  +QV+  LS     +L
Sbjct: 179 PRVPADLSHHEC-----LRPTMREESSFWMLHSGD------KVERVQVSGRLSANNVGML 227

Query: 238 ----GSGIALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
               G G+ + P  +            LVR++ +       ++   P  +    K KAF 
Sbjct: 228 GRLAGQGLGITPLLVFDAMERAIKQAGLVRVLPEWSLTPLPLFALLPSRML-PAKTKAFL 286

Query: 288 NFI 290
           +FI
Sbjct: 287 DFI 289


>gi|297620796|ref|YP_003708933.1| putative transcriptional regulator [Waddlia chondrophila WSU
           86-1044]
 gi|297376097|gb|ADI37927.1| putative transcriptional regulator [Waddlia chondrophila WSU
           86-1044]
          Length = 302

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 32/291 (10%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS----KLHRV 69
           V R GS   AA +L +S +++S+QIS LE E+GI+L  R  R L  T+ G+    ++HR+
Sbjct: 13  VGRHGSLAGAARELGVSSAAVSKQISKLEKELGIQLLVRTTRKLAFTDIGAAYLEQVHRI 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL- 128
             E    LE ++  + +    P GKLR+  T      ++  N+ EFL LYP I+++L + 
Sbjct: 73  IEE----LEASKALVSQMKAIPCGKLRVFCTPHFASRIVVPNIAEFLNLYPKIELELEIG 128

Query: 129 ------DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
                 + + ID+ M  +  A         S L+ R+L+T      AAP YLK   EP  
Sbjct: 129 ERIPHFEGEKIDVMMGNSMQA--------GSDLVHRRLLTTRYAICAAPSYLKRYGEPKH 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H ++T      +C ++  +     +    P I   +VN    ++     G GI 
Sbjct: 181 FNDLKDHRILTHR---MRCPDNLLYFKDKKKVAFAPYI---KVNDAKILVDLAFQGIGIV 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  Y VK    +  L  + +++      +Y   P       K++A  +FI
Sbjct: 235 QLHHYTVKKYLQSGELQELFQNLSQDDVPIYVVLPPRKYTPRKVRALIDFI 285


>gi|126443454|ref|YP_001061685.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126222945|gb|ABN86450.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 303

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 136/291 (46%), Gaps = 12/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F VVA +G F+ AA QL  + SS++R +  LE  +G+ L  R  R +TLT+ G+   
Sbjct: 7   LQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L      + ++  +P G LR++  +   + +L  +L  FL  YP + + L 
Sbjct: 67  EQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDLA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D++ D  D A+R+  P +   L+ R L        A+  YL     P +  +L 
Sbjct: 127 VSDAYLDLATDRIDVAVRIGAPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPAAPGDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246
            H  + F    P      +W  + D    +  +      + L I++  VL G G+AL+P 
Sbjct: 187 AHRCLRF----PYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALVPM 242

Query: 247 YIVKDN---PNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V D+     L+ + E   +TP      VY  Y    +++ K++ F  F+
Sbjct: 243 WLVHDDIVAGRLLPLFESWRVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFL 293


>gi|325915436|ref|ZP_08177750.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325538318|gb|EGD10000.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 339

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
             EL  H  ++  +      ++ +    +  P GE R   LQ    L+   + +L     
Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239

Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
            G GI +LP+ +  +    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 240 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293


>gi|213157584|ref|YP_002319629.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213056744|gb|ACJ41646.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
          Length = 300

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 139/296 (46%), Gaps = 13/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL   P
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKNNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL 237
             S  EL  H +++  +   + ++    L   D  + + ++S   +  N Y+ + Q    
Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYM-LAQLASQ 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GIALLPD   +D   +  LV+I+ D        +  YP      G L A R FI
Sbjct: 237 NCGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYP---SRRGLLPAVRVFI 289


>gi|118591577|ref|ZP_01548974.1| probable transcriptional regulator protein, LysR family protein
           [Stappia aggregata IAM 12614]
 gi|118435905|gb|EAV42549.1| probable transcriptional regulator protein, LysR family protein
           [Stappia aggregata IAM 12614]
          Length = 304

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 135/287 (47%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT AA+ L + +++++  I  LE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRAFVRVVETGNFTRAADSLQMPKATVTNLIQNLEKHLQTKLLNRTTRRVIVTTDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++  +++     L ++   P G+LR+  +       +   L  F   YPDIQI + 
Sbjct: 67  ERAAQIVSEVDELDASLAQAQNNPGGRLRVEMSGAFADWFVIPALGGFYEKYPDIQIDIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D   +  DCA+R   P    SLI R++  + +   AA  YLK    P S  ++ 
Sbjct: 127 IGDRTVDYLAENVDCALRGGAP-ADQSLIARRVAEVGLMTCAAASYLKRAGIPESPADVQ 185

Query: 188 -KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +++            +    +  + + R  C  VN   S +   + G GIA +PD
Sbjct: 186 ANHHCVSYFVAAKGRTNPMTFRKDGEEILVDGRYHC-SVNDARSYVAAVLAGHGIAQVPD 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V++     +LV ++ +    +  +Y  YP     + K++ F +++
Sbjct: 245 FMVREELERGDLVPVLAEWSADTIPLYIVYPPNRHLSNKVRVFVDWL 291


>gi|311106842|ref|YP_003979695.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761531|gb|ADP16980.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           116 [Achromobacter xylosoxidans A8]
          Length = 297

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GS T AA +  +S +  ++ I GLE  +G++L  R  R  +LTE G    
Sbjct: 7   MEVFVAVVELGSLTAAAARHEMSPAMAAKHIKGLEARLGLRLMNRTTRRQSLTEAGQAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +   +     P G LRI +T+  G   L   + E+L  YPD+ + L 
Sbjct: 67  ARCKVILSDIRDAEQGAEAMRSAPRGHLRITSTVTFGSFALAPAIAEYLSEYPDVSVDLA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D A+R+ +P   S L+ RK+    M   AAP YL+    P +  +L 
Sbjct: 127 LSDAVEDVVASRYDLAVRIGEPAD-SGLVARKIGRYQMIICAAPAYLERHGTPETAGDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
           +H  + F     +      W    D   G    +   V N+  ++ Q  + G GI L P+
Sbjct: 186 RHQCLDFSYWNRRT----GWRLNADEGSGAAYPAGRFVSNNGQALRQAALAGFGIVLQPE 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ ++     LV I++     +  +   YP+  K   KL  F  F+
Sbjct: 242 LLLAEDVRAGRLVPILQSAWPAARPITMLYPKDRKALPKLTTFVEFM 288


>gi|294625160|ref|ZP_06703803.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600532|gb|EFF44626.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 338

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 21/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
             EL  H  ++  +      ++ +    +  P GE R   LQ    L+   + +L     
Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239

Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
            G GI +LP+ +  +    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 240 DGFGITMLPETVCAEA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293


>gi|323526759|ref|YP_004228912.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323383761|gb|ADX55852.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 312

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 135/298 (45%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YP++ ++L
Sbjct: 66  LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQERYPEVHVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ L   +  S L+ ++L +    A A+P YL+    P +  +L
Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSVACASPAYLEKHGVPHTPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
           + H+ +    ++        W  T D P GE  I    +  QVN   ++      G G+ 
Sbjct: 186 EHHSCL---QMVTPVFPPDKW--TFDGPNGEETITLGPATFQVNVAEAMAVAVASGMGVG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L+P Y          LVR++ D  +    +Y  YP            R ++  K R W
Sbjct: 241 LIPIYSAISGLRKGELVRLLPDYTSQEMNLYALYPS-----------RQYLDAKIRTW 287


>gi|190890011|ref|YP_001976553.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695290|gb|ACE89375.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 301

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R L+LTE G+ 
Sbjct: 5   EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKALGGTLLHRTTRKLSLTEDGAV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++E    ++ E     SG +RIA  +  G+  L   L  FL  +P+I + 
Sbjct: 65  FLERAGRIVREIEEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLAEHPEIHLT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D++ +D + D  D  IR   P+  S L+  KL        A+P YL     P S+ +
Sbjct: 125 LDIDDRRVDAASDGYDAIIR-NGPLADSRLVAWKLAPSRRLLCASPDYLARQGMPSSLAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H  I + +   + + D+ +  T +  I       L +N+   +    + G GIALLP
Sbjct: 184 LNSHRGIFYTN---RGVADWRF-QTPEGAILVRAKPALGINNGDMLRDAAIAGLGIALLP 239

Query: 246 DYIVKD--NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFI 290
            +I        L+  ++    P    +Y  +P     + KL+A  + +
Sbjct: 240 AFIAGPAIREGLLAEIDVGHRPEAEFIYMAHPAGRNPSAKLRAIADHL 287


>gi|330953242|gb|EGH53502.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 301

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 130/292 (44%), Gaps = 14/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+  +
Sbjct: 7   MRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLTEFGTAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV   +  ++   +++   P+G LRI   +  G  +L   L EF   +P++++ L+
Sbjct: 67  ERCLEVLGLVAQSEQLAEQAQGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPEVKLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D AIRL    +SS LI R L    +   AAP YL     P+   EL 
Sbjct: 127 LTNQRLDMIDNGFDVAIRLGNIPESSPLIARALQDYTLTICAAPDYLARNGTPIHPAELR 186

Query: 188 KHNLITFGDLIPKCME----DFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240
            HN + F    P   E       W  T     GE  +     +  N+  ++ Q    G G
Sbjct: 187 GHNCLAFA--YPAGDEWRTAGTQWRMTGAE--GEVLVDVSGSMVANTSAALYQAARAGLG 242

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + +LPD +V+ +     L+ +  D   P       Y +      KL++F  +
Sbjct: 243 VVMLPDALVQRDLQEGRLIALFPDYHLPRRPTTLLYVQDRYRLPKLRSFVEY 294


>gi|170701989|ref|ZP_02892910.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133110|gb|EDT01517.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 320

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 14/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + +
Sbjct: 66  YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVIVDM 125

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +
Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIAD 185

Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  HN +   +   ++   + D    + V+          L VN    +    + G+GIA
Sbjct: 186 LAHHNYLRRDSNSTMLDSLVIDAAAASRVNLN------GNLIVNHLEGLRAAVLAGAGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LL   +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 240 LLGTEVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|87118762|ref|ZP_01074661.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86166396|gb|EAQ67662.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 294

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 135/291 (46%), Gaps = 25/291 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  + +      AA +L +  ++++R++  LE  V  +L +R AR   LT +G  
Sbjct: 3   DDIVLFIHIVQQQGLAPAARELDMPVATVTRRLQRLENSVRCRLIHRTARRFELTSEGEI 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R  S +  + E TQ  L        G L++   I+L    LQ     F+  +PDIQ++
Sbjct: 63  YFRAYSHLVDQFEQTQQSLSGELNDMRGSLKVMAPINLSAGFLQPMWSGFIQAFPDIQLE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L N+  D+  + AD AIR+  P   S+  Q++L  +     A+P YL    EP ++ +
Sbjct: 123 LSLSNQLEDMLAEKADLAIRV-GPQPDSAFYQKRLGEVATMLVASPDYLTKFGEPKNLAD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVLGS 239
           L  H LI    ++       +W  T+ +P G+      P +S L VN       +   G 
Sbjct: 182 LSHHKLIASQAIM-------SW--TLQKPGGQEKTSLSPALSTL-VNDVNIAASFVRDGL 231

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           GI+LLP   V+D  N   +VR++ D       +Y  +P     +G+L   R
Sbjct: 232 GISLLPTTEVQDYLNTGEMVRVLADWQGLDRVIYAVWP-----SGRLMNVR 277


>gi|241763319|ref|ZP_04761375.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241367471|gb|EER61770.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 303

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 138/284 (48%), Gaps = 24/284 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  SFT AA QL +SQS++S  I  LE  +G++L  R  R ++ T  G
Sbjct: 5   NYNDLLAFMAVAREQSFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     + E S KP+G +RI TT    + +L   L + L  YPDI+
Sbjct: 65  ERLLQNVAPRFQEIEAELTAIGELSDKPAGTVRITTTEHAARTVLWPKLAKMLSKYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I++++  +I  +  D  +RL   + S +        + +   A+P YL +  EP + 
Sbjct: 125 VEMIVESRLAEIVAERYDMGVRLGDTLTSDTTAVCISADLPVAIVASPAYLAHHPEPKTP 184

Query: 184 QELDKH-----NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           Q+L  H      L++ G L       + W L    + I       L  N  + I+   + 
Sbjct: 185 QDLIHHACINLRLMSRGGL-------YAWELKKGKQQINAHVEGQLVFNEPMQILDAALS 237

Query: 238 GSGIALLPDYIVKD--NPNLVR-IMEDVIT---PSFTVY-FCYP 274
           G G+     Y+++D   P + +  +  V+T   PSF  Y  CYP
Sbjct: 238 GFGLG----YVLEDMAQPYIAQGRLRQVLTDWCPSFPGYHLCYP 277


>gi|126441263|ref|YP_001059505.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126450165|ref|YP_001080914.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|134277302|ref|ZP_01764017.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|217421619|ref|ZP_03453123.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|237812843|ref|YP_002897294.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|251766967|ref|ZP_04819900.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254177668|ref|ZP_04884323.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254179290|ref|ZP_04885889.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254197239|ref|ZP_04903661.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254200178|ref|ZP_04906544.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254258199|ref|ZP_04949253.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254297176|ref|ZP_04964629.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254358072|ref|ZP_04974345.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|126220756|gb|ABN84262.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126243035|gb|ABO06128.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134250952|gb|EBA51031.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147749774|gb|EDK56848.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|148027199|gb|EDK85220.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157807708|gb|EDO84878.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|160698707|gb|EDP88677.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169653980|gb|EDS86673.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184209830|gb|EDU06873.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217395361|gb|EEC35379.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|237504897|gb|ACQ97215.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|243064319|gb|EES46505.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254216888|gb|EET06272.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 327

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 133/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 33  QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 92

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LR++     G+  +   +  F   +PD+ + L
Sbjct: 93  LEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPDVSVTL 152

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ +L
Sbjct: 153 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPGTLDDL 211

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W       +   R+S  ++ +    + ++C+ G G+A   
Sbjct: 212 ARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 268

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 269 WWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 316


>gi|299069026|emb|CBJ40275.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 298

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 135/294 (45%), Gaps = 14/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  V R GSFT AA QL +SQS++S  I  LET +G++L  R  R ++ TE G
Sbjct: 5   NFSALLAFVTVTREGSFTRAAAQLGVSQSALSHAIRTLETSLGVRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +  S    +++T    L E   KPSG +RI  T    +++L   + +FL  YPDI+
Sbjct: 65  EHLFQKISGPMEEIDTEVQMLSEFRDKPSGTIRITATDYAIRSILWPKVTKFLTQYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D   +DI+    D  +R  + +    +  R          A   Y      P + 
Sbjct: 125 VELICDYGLVDIAAQRYDAGVRFGEQLAQEMIAVRLGPDERFALVATKGYFAKHPAPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISC-LQVNSYLSIMQYCVLGSGI 241
           Q+L  H  +     +P     + W        G + R+S  L  N    +++  + G G+
Sbjct: 185 QDLVDHQCVNL--RLPTHGGLYAWEFAKKGGRGLKVRVSGQLTFNGIYDVLEASLAGFGL 242

Query: 242 ALLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P+     YI K    LVR++E+   P ++ Y  Y  + +     +A R FI
Sbjct: 243 CYVPEAMALPYIAKG--RLVRVLEE-WCPLWSGYHLYYPSRRQPS--RAMRLFI 291


>gi|294502709|ref|YP_003566771.1| LysR-family regulatory protein [Yersinia pestis Z176003]
 gi|262360738|gb|ACY57459.1| LysR-family regulatory protein [Yersinia pestis D106004]
 gi|262364685|gb|ACY61242.1| LysR-family regulatory protein [Yersinia pestis D182038]
 gi|294353168|gb|ADE63509.1| LysR-family regulatory protein [Yersinia pestis Z176003]
          Length = 304

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSFT AA+ L L ++ +S+++S LE  +G++L  R  R L LTE G    
Sbjct: 1   MTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +  L+  SV+P GKLR+   + + + ++  +L EF   YP+I ++L 
Sbjct: 61  AKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++   +  +  DCAIR    ++ SS I R +  +H+  YAAP YL+        QEL 
Sbjct: 121 GSDRISHLLDNGIDCAIRGGH-LEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTHPQELS 179

Query: 188 KHNLITF--GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H  I++  G   P     F W L +       P    L  +     +  C+ GSGI   
Sbjct: 180 VHRRISWFTGQRNP-----FIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG 234

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             + V+       LV ++      +  ++  YP     + +++ F ++
Sbjct: 235 APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDW 282


>gi|261820422|ref|YP_003258528.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604435|gb|ACX86921.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 293

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 135/289 (46%), Gaps = 11/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  V  +GSF+ A+ +L + Q ++S+ I  LE ++   L  R  RGLT TE G   
Sbjct: 6   ALETFICVFETGSFSAASRRLGIGQPAVSKAIMQLEQQLATPLLIRSTRGLTPTEAGQHF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +     L   Q  +   +   SG+LRI   +   +  +   L EF+  +P + + +
Sbjct: 66  YEQIAPALTMLGEAQDHVVSGNAALSGRLRICAPVTFARLHIMPRLHEFMAEHPQLNVDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ILD++ ID+  +  D A+RL + ++ SSLI ++L +  M   A P Y      P+S   L
Sbjct: 126 ILDDRPIDLIAEGIDVALRLGE-MKDSSLIAQRLASCTMRLLATPDYFSAHGIPVSPDAL 184

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             +  + +  G+   + +   +   T+  P G  R+S  +      +    + G+G+A+ 
Sbjct: 185 SAYPAVIYLQGERTDRWIFSQDGTQTMIFPNGRIRVSAAE-----GVRATVLSGAGLAVA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +++     ++  ++ +++        ++  YP     + +++ F NF+
Sbjct: 240 SEWMFAPELESGQVITVLDSWSLGKMDLWAVYPGGRMTSSRVRTFTNFV 288


>gi|172061618|ref|YP_001809270.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994135|gb|ACB65054.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 323

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q  + KPSG LR+     LG+ ++   L  F   YPDI + L 
Sbjct: 67  EHCMKIISEIAEADASFQSGNRKPSGVLRVHMPSSLGRRVVLPALSIFRQRYPDITLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP  I +L 
Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPQEIADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   + G G+     
Sbjct: 186 DHHAVNF--RASHGARAIPWVFMIDGKPLEVRMNGSVTVNDSDAYVTCGLEGFGMIQPTL 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  N    +LV ++ D       +   YP     + K++ F +++
Sbjct: 244 FMVLPNLRDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWL 290


>gi|262371490|ref|ZP_06064805.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262313576|gb|EEY94628.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 308

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 1/190 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GSF+  A QL  + S+ISR IS LE  +G +L  R  R L L+E G ++
Sbjct: 12  EMAIFVKVVETGSFSETARQLGYTPSAISRSISRLEKALGTQLIQRTTRKLALSESGKQV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H    E+ +  +T        S KP G +RI+    +G  L+   + EFL  YP++ +Q+
Sbjct: 72  HVYCLEMLNAAQTVIESSGHFSEKPEGVVRISVPKAVGHYLIHPYIPEFLERYPEVDVQM 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+++ ID   D  D AIR+     S  L  RKL  I     A P YL+    P   ++L
Sbjct: 132 LLEDRHIDFIDDQIDLAIRITNE-PSLGLKGRKLFDIEHILVATPEYLEKVSNPKHPRDL 190

Query: 187 DKHNLITFGD 196
             H  I  G+
Sbjct: 191 KAHQCIYLGE 200


>gi|15966591|ref|NP_386944.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307319657|ref|ZP_07599083.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15075863|emb|CAC47417.1| Transcription regulator LysR family [Sinorhizobium meliloti 1021]
 gi|306894779|gb|EFN25539.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 318

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 141/302 (46%), Gaps = 26/302 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F      G F+ AA    ++ S++S+ +  LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEIFAKAVELGGFSAAARHYRMTPSAVSKLVLRLEERLGVRLVNRSTRKLQLTPEGHAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  T  +   ++  +     +   P G++R+      G ++L   + EF   +P + + +
Sbjct: 71  YERTVRILADIDEAE-RSASAGESPVGRVRLNVNASFGTHVLMPLVPEFRAHFPAVSLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +  +D+    AD AIR   P++SS+LI RKL    M   AAP Y++    P S++EL
Sbjct: 130 VMTDAVVDLMEARADVAIRA-GPLKSSTLIARKLGATRMMIVAAPSYIERYGMPSSLEEL 188

Query: 187 DKHNLITFGDLIPKCMEDF--NWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240
             H  + F      C       W    D   GE    P    +QV+    + Q  + G+G
Sbjct: 189 KGHERLGF------CYARAVDGWPLRTD---GETVVLPASGAVQVSDGEGLRQLALAGAG 239

Query: 241 IALLPDYIVKDNPN---LVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A L ++ V+++ +   LV ++ED+    +     VY     AL    +++A  +F+   
Sbjct: 240 LARLAEFTVREDVSARRLVPVLEDLNPGDLEEVHAVYLGQGGALP--ARVRAVLDFLARH 297

Query: 294 AR 295
           AR
Sbjct: 298 AR 299


>gi|298717475|ref|YP_003730117.1| transcriptional regulator [Pantoea vagans C9-1]
 gi|298361663|gb|ADI78444.1| Putative transcriptional regulator [Pantoea vagans C9-1]
          Length = 340

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 7/243 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F +VAR  +FT AA QL +S+S +S  I+ LE  +G++L  R  R ++LT+ G +
Sbjct: 51  NDLRAFTIVAREKNFTRAAAQLGMSRSGLSHAITALEARLGVRLLTRTTRSVSLTQAGVR 110

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   L++  + L+  S KP+G +RI        ++L   L+  L  +PDIQI+
Sbjct: 111 LFSTLQPMLSTLDSELVALRALSEKPAGTVRITAHDHAIDSILWPRLQPLLKRFPDIQIE 170

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D    DI     D  +RL   +    +  R     +M   A+P YL+    P    +
Sbjct: 171 LSVDYSLTDIVAQQFDAGVRLGDIVDKDMIAVRIGPDFYMAVVASPEYLQGRPLPAVPAD 230

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQV--NSYLSIMQYCVLGSGIA 242
           L  H  I     +P     + W      +PI   R++   V  N+YL +MQ  + G G A
Sbjct: 231 LTAHQCINL--RLPTHGGLYAWDFEQEGKPI-TVRVTGQTVFNNTYL-MMQAALDGLGFA 286

Query: 243 LLP 245
            +P
Sbjct: 287 YIP 289


>gi|226198957|ref|ZP_03794520.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225929057|gb|EEH25081.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 327

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 133/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 33  QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 92

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LR++     G+  +   +  F   +PD+ + L
Sbjct: 93  LEDCQRIINDIQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPDVSVTL 152

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ +L
Sbjct: 153 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPGTLDDL 211

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W       +   R+S  ++ +    + ++C+ G G+A   
Sbjct: 212 ARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 268

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 269 WWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 316


>gi|332995665|gb|AEF05720.1| LysR family transcriptional regulator [Alteromonas sp. SN2]
          Length = 303

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 3/247 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF   A  GS + A  +L++S +  ++ +  LET +G KL +R  R L+LT+ G 
Sbjct: 5   YTSMQVFVQAASRGSLSAAGRELNMSPAMATKHVDSLETRLGTKLLHRTTRQLSLTDAGR 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +    +   LE  + E+     +  G+LR+   +  G   +   + EF   YP +++
Sbjct: 65  EYLQACQRILQDLEEAESEVSSQQHQAMGRLRLNAPLSFGTRFIAPLIPEFTHRYPLVEV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +   D+  +  D  +R+   +  S L  R+L    M   A+P YLK    P  + 
Sbjct: 125 DLGLSDTQQDLLKESWDLTVRIGH-LADSDLRARRLGNCPMRLCASPEYLKKHGTPNRVA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  HN +++   +        W    D  I  P    L  N+  +++   V G GI   
Sbjct: 184 ELSNHNCLSYS--LSSAQRGGTWAFGQDGKIQVPVTGNLMSNNGDALLAAAVKGQGIIYQ 241

Query: 245 PDYIVKD 251
           P++IV +
Sbjct: 242 PNFIVSE 248


>gi|170703626|ref|ZP_02894366.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170131461|gb|EDT00049.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 313

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD+ ++L
Sbjct: 66  LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPDVHVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+     P +  +L
Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVDAHGAPHTPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
           ++H  I  G + P    D  W   +  P G+  I       +VN   ++      G GI 
Sbjct: 186 EQH--ICLGMVAPGFHFD-EW--ALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP Y       + N+VR+M +  +    +Y  YP       K++ + +F+
Sbjct: 241 GLPLYSAIGGLRSGNIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 291


>gi|193067205|ref|ZP_03048174.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|192959795|gb|EDV90229.1| transcriptional regulator, LysR family [Escherichia coli E110019]
          Length = 299

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
           +H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 EHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|115359471|ref|YP_776609.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284759|gb|ABI90275.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 293

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 114/247 (46%), Gaps = 5/247 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V ++  F  AA+ L +  S++SR+I  LE  +G++L +R  R +  TE G  
Sbjct: 5   DDMALFVEVVKAKGFRGAADALGMPNSTLSRRIGALEKAIGLRLLHRTTRKVEPTEAGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  +  +  +      +L E   +PSG LR +         L   + EF   YP I+ +
Sbjct: 65  YYERSKRIVEEARLVHEQLGEMLAQPSGLLRASFPEGFANIFLAPLVAEFARRYPGIRFE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  +  D+  D  D AIR+ +P  +S+LI R+L  +  H YA+P YL    EP    E
Sbjct: 125 FDLSPRLADLVSDPVDVAIRMGEP-ANSNLIARQLARLPRHLYASPRYLDMLGEPQHPDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  +             N   TVD  +G        +NS   I +   L  GIA+L 
Sbjct: 184 LVQHECLRLRGSKSDIWTVQNRDETVDVAVG----GRFLLNSVGMIQRLAALDMGIAILA 239

Query: 246 DYIVKDN 252
           + IV D+
Sbjct: 240 ESIVTDD 246


>gi|299533154|ref|ZP_07046538.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718684|gb|EFI59657.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 303

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 130/266 (48%), Gaps = 14/266 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ ++ +F  V   GS + AA QL ++ S++S+ I  LE E G+ L +R  R LTLT+ G
Sbjct: 3   DFRRMAIFAAVVERGSMSAAARQLDMTPSAVSQHIRQLEQEAGLTLLHRSTRQLTLTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +   + +       + EL     +PSG+LR+A      Q+     L  +L ++P+++
Sbjct: 63  QRFYIQCAAMCEAASRARAELAAEHQRPSGELRLAAPAGFTQHAAPA-LGRWLAMHPELR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK----NCRE 179
           ++L++D+  ID+     D A+R    +Q SS + R L        A+PH++K      R 
Sbjct: 122 LRLLMDDAPIDLIQARVDLALRFGN-LQDSSWVARHLGRSATLLCASPHWIKAHGSTPRH 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLG 238
           P  + +L    +    D       DF W           ++  L V+++ S + Q+C  G
Sbjct: 181 PSELAQLPWLEMSRSDD----AQADFLWRQQDTAQEYRLQVRPLMVSNHRSAVQQFCEAG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMED 261
            G+ALL  + V    +  +LVR++ D
Sbjct: 237 LGLALLSAHDVAASLETGSLVRLLPD 262


>gi|238896970|ref|YP_002921715.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|262040577|ref|ZP_06013817.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330001451|ref|ZP_08304012.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|238549297|dbj|BAH65648.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259042069|gb|EEW43100.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328537652|gb|EGF63866.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 299

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 21/294 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE L L + S+SRQI  LE+ +G++L +R  R + LT+ G   +
Sbjct: 7   MQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+      Q      SG+LR+   +   + ++  +L  FL  YP I+++L 
Sbjct: 67  ERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKMVIPHLPTFLQQYPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   ++ S LI R L  +     A+P YL     P S+++L 
Sbjct: 127 SSDRLVDVIREGFDCVVRV-GALKDSGLIARPLGKLTQINCASPDYLARFGYPQSLEDLA 185

Query: 188 KHNLITFGDLI---PKCME-----DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            H LI +   +   P   E        W+ T            L VNS  +    C+ G 
Sbjct: 186 DHALIHYASTLGVRPPGFEVMIDGAVRWVKTG---------GILTVNSTETYQAACIAGL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P   V++     +L+ I+         V   YP     + ++  F  ++
Sbjct: 237 GIIQVPRTGVREALRAGDLIEILPQYRAEPLPVSLIYPHRRNLSRRVNLFMEWL 290


>gi|197121452|ref|YP_002133403.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171301|gb|ACG72274.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 311

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 139/291 (47%), Gaps = 18/291 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  L  F  ++RSGS   AA++L + ++++ R+++ LE E+G+ LF R  +G   T  
Sbjct: 21  LDWGNLLFFLELSRSGSLARAAKRLGVDRNTVGRRVAALEEELGLPLFERGPQGWACTAA 80

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L  + S V   +             P+G +R+ T++ +  +LL   L      +P +
Sbjct: 81  GEELAALASRVEEDVLAIARHADARDRTPAGTVRLTTSVPVASHLLAPALPSLRARHPRL 140

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +  D ++ D++   AD A+RL +P   + L+ RK+ ++    YA+P +    R    
Sbjct: 141 LLDVSADFRNYDLTRREADLALRLGRP-SDAGLVARKVASVAYGFYASPAFAAERR---G 196

Query: 183 IQELDKHNLITF-GDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + +L +  ++ + G   P  + M+D          +   R    + N+ L++      G 
Sbjct: 197 LLDLARDPVLAYEGATSPQERWMDD----------LAPARAVAFRCNTSLALAAAARTGI 246

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G A+LP ++   +P LVR ++    PS+ ++      L+   +++A   ++
Sbjct: 247 GAAVLPCFVADGDPALVR-LDGPEPPSYDLWLLVHGDLRRVPRVRAVIEWV 296


>gi|52425265|ref|YP_088402.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307317|gb|AAU37817.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 304

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 134/286 (46%), Gaps = 10/286 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +A +GSFT AAE+L ++ S++S+ +  LE  + ++LF R  R ++ TE G K
Sbjct: 15  NELYFFVQIANAGSFTKAAERLGVTTSALSQNMRSLEKHLDVRLFNRTTRSISTTEAGEK 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +  +  +      L E   +P G +RI T+      ++   L+ FLL  P I+++
Sbjct: 75  LLAEIAPHFLAIADAVRHLDEIRDEPQGTIRINTSEIAANLIIYPKLQPFLLANPHIKVE 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L++DN+ +DI     D  +RL   + +  +  +    + M   A+P YLK+   P  I +
Sbjct: 135 LVIDNRWVDIVAQGFDMGVRLGYAVFNDMIAVQISEPMKMVLVASPGYLKDKPLPKKIND 194

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  ++LI  G           W      + +G   +    +N+ L   Q  + G GIA L
Sbjct: 195 LTNYHLI--GSRFSSEHSQLEWEFMDKGQKVGFQPMPQFSINNDLRT-QAALDGFGIAWL 251

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           P+  V +   N NLV I+          Y  YP      G  KAF+
Sbjct: 252 PEIRVHEELKNGNLVEILPQYAYTYDPFYIYYP---NRKGNSKAFQ 294


>gi|212637060|ref|YP_002313585.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212558544|gb|ACJ30998.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 327

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 148/289 (51%), Gaps = 6/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +++ GSFT AA +L+++QS++S++I+ LE ++G  LF+R++R + LT QG 
Sbjct: 31  FDCLQIFVKISQLGSFTAAANELNITQSAVSKKIAWLENKLGFALFHRNSRQIQLTTQGV 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  + +     ++   +  L+E   +  G+L+++    +   LL   + +F+ L+P + +
Sbjct: 91  QYLQYSERFIDEMTHFESSLKEELEQVKGQLKLSVPSSIATQLLLQPINDFMDLHPGLTV 150

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              ++++ +D+     D AIR    ++ S    R L        A+P YL     P+   
Sbjct: 151 DTSVNDRQVDLIESNIDIAIR-AAVLEDSGYKARFLFNNQAVYVASPRYLLGREAPILAS 209

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN +T+  + P  +        VD  +    +   + +S   +++  +LG GI  L
Sbjct: 210 DLQSHNCLTYSLMSPSNIWSLRKGGKVDAKVMVKEV--FKSDSPELLLEMALLGRGITAL 267

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+++V +     +L++++    + +  +Y  +        +++AF +++
Sbjct: 268 PNWMVAEQLKTGSLIQVLTSYQSIALPMYAVFKNDDYQPYRVRAFIDYL 316


>gi|317404494|gb|EFV84903.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 334

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 139/296 (46%), Gaps = 19/296 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--- 66
            F  VA  G+F  A ++L + +S++SR +  LE ++G +LF R  R  +LT +G +    
Sbjct: 33  AFIAVAAEGNFAKAGDRLGIGRSAVSRSVQKLEDQLGTRLFVRTTRSTSLTLEGERFYEQ 92

Query: 67  -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H     +   L+  + EL+E    P+G+LR+ +T+  G+ ++   L+ F    PDI ++
Sbjct: 93  CHPGVERIVQALDDMR-ELREG--PPAGQLRVCSTVGFGRKVVAPLLQGFRHANPDISVE 149

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD+   D + D  D + R  + ++ S +I +K++ + M   AAP Y+     P S+ +
Sbjct: 150 LLLDDGPTDFTTDRVDLSFRNGR-MEDSQVIAKKVIPMQMMLCAAPAYVARHGLPDSVDD 208

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  H  + F     +  E   W   V    R +  P  + L  N    ++Q  + G G+A
Sbjct: 209 IAGHRCVNFRLASGRVYE---WEFKVGGQLRKVAPP--AMLTFNDADLVLQAVLDGHGVA 263

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +  Y V D+     LV  +          Y C+        +++ F +++  + R
Sbjct: 264 QMAGYQVCDHLRAGTLVACLPQYAPDDRGHYLCFLSRQHLPARMRVFIDYMTERIR 319


>gi|308188122|ref|YP_003932253.1| hypothetical protein Pvag_2644 [Pantoea vagans C9-1]
 gi|308058632|gb|ADO10804.1| Uncharacterized HTH-type transcriptional regulator yafC [Pantoea
           vagans C9-1]
          Length = 299

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 24/284 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++LR +  V  SGS T AA QL  + S ISR +S LE+++   L +R  R L LT
Sbjct: 1   MKITLEELRAWVAVVDSGSITAAATQLAQTSSGISRALSRLESKLQTTLLHRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   +E  + ++      PSG+LR+        +++   + +F   YP
Sbjct: 61  EEGQVFLEHARQILASVEQAEEQIALRREMPSGRLRVNAATPFMLHVIVPLVDDFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  D+  ID+     D AIR+ + ++ S+L  R L +  +   A+P YL     P
Sbjct: 121 LIQLELNTDDIMIDLLEQQTDIAIRIGE-LRDSTLRARLLGSSAIRLMASPAYLAKAGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQY 234
            S+ +L +H  I F    P  +    W      PI +P    ++V   L      +I Q 
Sbjct: 180 QSVADLAQHQTIGFS--YPDTLN--VW------PIWQPDGDFMRVKPTLAASSGETIRQL 229

Query: 235 CVLGSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYF 271
            + G GIA L D++ +++       P L     D+  P   VY+
Sbjct: 230 ALAGQGIARLSDFVSREDCAAGRLVPVLTAETRDLRLPVHAVYY 273


>gi|293394781|ref|ZP_06639072.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422732|gb|EFE95970.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 327

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 146/304 (48%), Gaps = 29/304 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V  +G+FT AA  L  S++ +S  I  LE+E+G+ L  R  R L+LT+ G + 
Sbjct: 35  RLAIFVAVVEAGNFTAAANTLGQSKAVVSFNIKQLESELGVSLLARSTRKLSLTDAGERF 94

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++ +  +  + E    +++      SG LRI +T + G + +   L  F  L+P ++IQ 
Sbjct: 95  YQRSLRLLQEAENVLDDVRRDHHGLSGTLRITSTPEYGAHAVVPALAAFAQLHPRLRIQH 154

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  ++  D+  +  D AIRL +   S+    R L    +   A+P YL   ++ +S+ +L
Sbjct: 155 VSSSQHADLIAERFDVAIRLGRMADSNHRAAR-LDDFAILPVASPDYLAR-QQIVSLAQL 212

Query: 187 DKHNLITFGDLIPKCMEDFNW----------LATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            +   I    L        +W          L  V+ P      + L  +S  +++ + +
Sbjct: 213 AQAQWIVHSRL----ASPLSWQVVTPQRQAVLFDVETP------AALTADSATALLAFAL 262

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+G+ALLPD++ +       L +++ D   P+ ++Y  YP       K++AF +F+   
Sbjct: 263 HGAGVALLPDWLARPALQRGQLCQLLPDHRFPTQSIYALYPNTRHVPEKVRAFIDFL--- 319

Query: 294 ARDW 297
            R W
Sbjct: 320 -RSW 322


>gi|91784452|ref|YP_559658.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91688406|gb|ABE31606.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 312

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++      GQ+ +      +   YPD+ I+L
Sbjct: 66  LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHAMTSFGQHYVVPAAGRYQQRYPDVHIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ L   +  S L+ ++L +    A A+P YL+    P +  +L
Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLELHGVPQTPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS----CLQVNSYLSIMQYCVLGSGIA 242
            +H  +    ++        W  T D P GE  I+      QVN   ++      G G+ 
Sbjct: 186 ARHTCL---QMVTPVFPTDKW--TFDGPNGEETIALGPTTFQVNVAEAMAVAVSSGMGVG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L+P Y       +  LV ++ +  +    +Y  YP            R ++  K R W
Sbjct: 241 LIPIYSAISGLRSGELVWLLPEYTSQEMNLYALYPS-----------RQYLDAKIRTW 287


>gi|167824806|ref|ZP_02456277.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
          Length = 300

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 133/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LR++     G+  +   +  F   +PD+ + L
Sbjct: 66  LEDCQRIINDIQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPDVSVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ +L
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPGTLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN +    L     +   W       +   R+S  ++ +    + ++C+ G G+A   
Sbjct: 185 ARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|300717358|ref|YP_003742161.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299063194|emb|CAX60314.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 311

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 124/267 (46%), Gaps = 16/267 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + ++  L  F  V    SF+  A +  +S S ISR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   AINFRTLLFFIGVFDEQSFSAVARREGVSASMISRVILQLEDTLGQQLFYRNTRAVIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +L   + E+ + S++PSG +RI   +  GQ  +   L E    YP 
Sbjct: 66  AGRLFIDYARAMTEQLSEARTEMLDRSLEPSGLIRINAPVFFGQRHIAPWLTELSNRYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L   +  ID   D AD   R+   +  SS   R   T H H  A+P Y++   +P 
Sbjct: 126 LQIELTQTDDYIDPHRDAADVIFRIGT-LTDSSFHARVFGTQHYHLVASPEYVEKHGQPA 184

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236
           S  EL +H  + + G   P       WL    +P G     P    L  N+  S++   +
Sbjct: 185 SPAELSEHKCLVYRGFSGPN-----RWL--FRKPGGRWTHFPVNGLLTSNNAESLLTSAL 237

Query: 237 LGSGIALLPDYIVKDN---PNLVRIME 260
            G G+ L PD+++ D+     LVR+ME
Sbjct: 238 GGMGMVLFPDWLIGDSLKKGALVRVME 264


>gi|253687749|ref|YP_003016939.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754327|gb|ACT12403.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 314

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 101/192 (52%), Gaps = 3/192 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + +KL +R  R L +T  G+
Sbjct: 4   FDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPDIQ 
Sbjct: 64  VYYERVIRLLADMEDAENSLSSAAITPKGRLRVDVPSPLARLVLVPALPAFHARYPDIQF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  D  DC +R  + I   SLI R +  + +  Y AP Y++    P   +
Sbjct: 124 DMGVSDRVVDLIGDNVDCVLRGGE-INDQSLIARHVGDLQIGVYVAPSYVERLGVPAHPR 182

Query: 185 ELDK--HNLITF 194
           EL+   H ++ F
Sbjct: 183 ELENTDHRIVGF 194


>gi|241766507|ref|ZP_04764373.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241363277|gb|EER58827.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 302

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 138/294 (46%), Gaps = 18/294 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +AR+G+   AA +L +  ++++R+I  LE +VG  LF R A G  LTE 
Sbjct: 1   MDWDNLRYFLELARAGTLVGAARRLAVDHTTVARRIQALEKQVGSALFAREAGGHRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESS--VKPS--GKLRIATTIDLGQNLLQGNLKEFLLL 118
           G    RV       +E   + ++ ++  V+    G  RI TT   G  +L   L  F L 
Sbjct: 61  G----RVLLPQVEAMEAAFLAVENAAPGVRQGLHGLARIGTTEGFGNLILAPQLARFALE 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P + I L+   + + +S   AD  I L +P + + ++  KL    +  Y A  YL    
Sbjct: 117 HPGLGIDLLALPRLVHLSRREADIVISLERPARGAVVVV-KLTDYVLQLYGARSYLARHA 175

Query: 179 EPLSIQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              +  +L  H+ I++ D  L  K ++  + L         P    L+  S ++  +   
Sbjct: 176 PIRTADDLRGHSFISYVDDLLFSKELQILDELH-------RPTHFALRSTSIMAQYEAAR 228

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+G+A+LP ++   + +L  ++  +   + T +   P   K+  +++A  +F+
Sbjct: 229 AGAGLAVLPAFVAAQDASLAPVLPGLARFTRTFWMSMPLENKHVARMQAVWSFL 282


>gi|171317480|ref|ZP_02906671.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097376|gb|EDT42220.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 323

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q  + KPSG LR+     LG+ ++   L  F   YPDI + L 
Sbjct: 67  EHCMKIISEIAEADASFQSGNRKPSGVLRVHMPSSLGRRVVLPALSIFRQRYPDITLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP  I +L 
Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPQQIADLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D    E R++  + VN   + +   + G G+     
Sbjct: 186 DHHAVNF--RASHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFGLIQPTL 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  N    +LV ++ D       +   YP     + K++ F +++
Sbjct: 244 FMVLPNLRDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWL 290


>gi|317401128|gb|EFV81781.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 293

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 140/286 (48%), Gaps = 28/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ + + LR+F  V  +GS + AAE L  + S +SR +S LE ++G+ L  R  R + LT
Sbjct: 1   MALNSEALRLFLGVVDAGSMSAAAEMLGQTASGVSRGLSRLEEDLGVTLLNRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+       ++   LE  +  ++  + +P+G+LR+  ++ +  + +  ++ +F   YP
Sbjct: 61  AEGAHFLHKARQIVQSLEEAEECMRIVNQQPAGRLRVDASVPVMLHCVVPHVADFRREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  +++ +D+     D A+R+  P+  S+L  R +        A+P YL     P
Sbjct: 121 AISLELTSNDRIVDLIEHRTDVALRM-GPLNDSTLHARPMRPRPRWLMASPEYLARRGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--------NWLATVDRPIGEPRISCLQVNSYLSIM 232
            ++++L  H L+ F    P+ +  +         +LAT            L  +S  +  
Sbjct: 180 RTVEDLAGHELLGFTQ--PESLNVWPLRHAGGSTYLAT----------PTLATSSGETQR 227

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVIT----PSFTVYF 271
              + G GIA L D++ +D+     LVRIMED+ T    P   VY+
Sbjct: 228 HLALRGVGIACLSDFVSRDDLREGRLVRIMEDLHTDYLQPMHAVYY 273


>gi|288935124|ref|YP_003439183.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889833|gb|ADC58151.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 303

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 20/280 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F VVA+  +FT AA++L +SQS++S+ +  LE ++GI+L  R  R +  TE G +
Sbjct: 7   NALAAFMVVAKEQNFTRAAKRLGVSQSALSQTVRVLEAQLGIRLLNRTTRRVVPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L          ++   + L E   KP+G +R+  T    +++L   +   +  YPDI+++
Sbjct: 67  LLASVGPQIEDIQRQLMVLSELRDKPAGTIRLTATEYAAESILWPAVSRLVKKYPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ D    DI  D  D  +R  + I    +  R    + M    +P Y  N   P++ QE
Sbjct: 127 ILTDYGLTDIVRDRFDAGVRPGETIAKDMIAVRIAPDMRMTVAGSPDYFSNRHVPITPQE 186

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           L +H  I       G L       + W    D      R+   L  N+   I++  + G 
Sbjct: 187 LTEHCCINLRLSGHGGL-------YAWEFEKDGRELNVRVDGQLVFNTGSMILKAALEGR 239

Query: 240 GIALLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCYP 274
           G+A LP+     YI     +LVR++ED   P    +  YP
Sbjct: 240 GLAYLPEGQLEPYIASG--DLVRVLEDWCEPYSGYHLYYP 277


>gi|260424396|ref|YP_003212597.1| hypothetical protein Ctu_1p00210 [Cronobacter turicensis z3032]
 gi|260219204|emb|CBA34558.1| hypothetical protein Ctu_1p00210 [Cronobacter turicensis z3032]
          Length = 313

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 6/248 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +  L  F   A + SFT AA  L +S S++ + ++ LE ++G++LF R  R ++LT +G
Sbjct: 11  SFTALASFVRTAETLSFTQAARVLGISASAVGKNVARLEQKLGVRLFNRSTRSVSLTAEG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L         +L   + EL  ++  PSG+LRI+  + +G +LL   L  F   YP+I 
Sbjct: 71  ATLLARCRPALEQLREAEAELTSATDTPSGRLRISLPV-IGYHLLMPFLPAFAARYPEID 129

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   ++ +++  +  D AIR    +  S L    L        A+P YL     P + 
Sbjct: 130 IELDFSDRLVNLVDEGFDVAIR-SGEMADSRLTATTLGHFRFVLCASPVYLAEHGAPQTP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L KH  I F    P       W  T     G P  S L VN+  ++++  V G GI  
Sbjct: 189 DALKKHRCILF--RFPSTGLIQPWELTGLTMTGAP--SALTVNNIEAMIRAAVAGMGICY 244

Query: 244 LPDYIVKD 251
           +PD+IV  
Sbjct: 245 VPDFIVNS 252


>gi|209544842|ref|YP_002277071.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532519|gb|ACI52456.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 300

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 129/289 (44%), Gaps = 9/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F  V  +GSF+ AA  L++ Q ++S+ I+ LE+ + + L  R   GLT TE G 
Sbjct: 4   YQAMATFVRVVETGSFSAAARHLNVGQPAVSKTIAQLESRLQVSLLIRSTHGLTPTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        + +  ++  + +    SG+LR++      +  +   L  FL  +P + +
Sbjct: 64  SFYERARNAIQEADEAELAAKGAGAGLSGRLRVSAATTFARLHVIPKLPHFLAAHPHLDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +ILD++ ID+  +  D ++R+   +  S+ + RK+ T      A P YL    +P S  
Sbjct: 124 DIILDDRMIDLVAEGVDISLRMGM-LSDSTAVARKIATGGRSVLATPAYLARAGKPQSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I +    P         A V   +G      L+V++   +    +   G+ + 
Sbjct: 183 DLANHEAIIYSQQ-PNAWSFTRDGAAVSVSVG----GRLRVSAAEGLRAALLADMGLTIA 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D++     +N  +VR++E    P   ++  +P     T K + F  F+
Sbjct: 238 SDWMFAPELENGAIVRVLEAWSLPPIGLWAVFPAGRMMTAKARRFAAFV 286


>gi|87200782|ref|YP_498039.1| LysR family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136463|gb|ABD27205.1| transcriptional regulator, LysR family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 301

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 131/295 (44%), Gaps = 25/295 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  LR+F  +AR GS   A  +L  SQ ++ R++  LE  VG  LF R + GLTLT++
Sbjct: 18  LEWSDLRIFLAIAREGSLGRAGRRLGQSQPTMGRRLRALEATVGAMLFQRSSSGLTLTDE 77

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  + R    +  +    + EL        G +R++ +   G+ +L   + EF  L+P +
Sbjct: 78  GQVMLRHAEVMEGEALALERELTGRDGSLEGLIRVSCSDWFGRIMLAPVVAEFTRLHPAV 137

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK------- 175
            ++++ D +   +    AD  IR+        ++ R+L TI    YA P   +       
Sbjct: 138 VVEVLTDARVYSLVRREADLVIRIAG-FDEPEVVARRLTTIRYGVYAKPGTGRPVAGDGE 196

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            C  PL + +        FG+     M D  WL          RIS  + NS     Q C
Sbjct: 197 GC--PLIVMD------TAFGE-----MPDVAWLMQT---FPNARISA-RSNSRDIQAQLC 239

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LG+G+A+LP  +      + R+  D   P+   +  + + L    +L+AF + +
Sbjct: 240 ALGAGVAVLPLPLGDATAQIGRLELDAEPPTRDTWIGFHKDLVRLPRLRAFIDLL 294


>gi|17544924|ref|NP_518326.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17427214|emb|CAD13733.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 300

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 125/277 (45%), Gaps = 14/277 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR GSFT AA +L ++QS++S+ +SGLET + I+L  R  R ++ T  G +
Sbjct: 7   NDLLAFVTVAREGSFTRAAAKLGVTQSALSQTVSGLETRLKIRLLTRTTRSVSPTAAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +     + ++E+    L E   KP+G +RI     + +  L   L   L  YPDI+++
Sbjct: 67  LLQAIGHRFDEIESELEALTELRDKPAGTVRITCGDQIIRTTLLPKLMPLLHEYPDIKLE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L ++    DI  D  D  +R    +    +  R    + M   A+P Y      P + ++
Sbjct: 127 LDINYGFRDIVADRFDAGVRFSGTVDKDMIAVRIGPDMRMAVVASPAYFAKHPAPKTPRD 186

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  H  I     T+G L      D        R +       L VN+   I    V G G
Sbjct: 187 LVHHQCINIRFPTYGGL------DVWEFERRGRKLKIRVDGQLVVNTTPHIAAAAVGGLG 240

Query: 241 IALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYP 274
           +A LP+   +   +   LVR++ED   P    +  YP
Sbjct: 241 VAYLPEDEFWPHLEEGRLVRVLEDWCPPFSGYHLYYP 277


>gi|134297146|ref|YP_001120881.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134140303|gb|ABO56046.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 319

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 141/295 (47%), Gaps = 14/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + +
Sbjct: 66  YERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDM 125

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +
Sbjct: 126 TLSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPDYLERRGTPQTIAD 185

Query: 186 LDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  HN +   +    +   + D    + V+          L VN    +    + G+GIA
Sbjct: 186 LAYHNYLRRESSASALDALVIDAAAASRVNLN------GNLIVNHLEGLRAAVLAGAGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LL   +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 240 LLGTEVVGDDIESGRLVPLLLDAVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|262278744|ref|ZP_06056529.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259095|gb|EEY77828.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 311

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 20/296 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++  F  V  SGSF+  A QL  + S+ISR I+ LE  +G +L YR  R L L+E G +
Sbjct: 11  NEMATFVKVVESGSFSETARQLGTTPSAISRAIARLERALGTRLLYRTTRKLRLSESGQQ 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I IQ
Sbjct: 71  VYQRCLDMVNAAQAVMESSGQFHVEPQGIIRLSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++ +D+  D  D A+R+ +   S  L+ RKL+ I     A P YL+    P    +
Sbjct: 131 MLLEDRYVDLIDDEVDLALRITEQ-PSGGLMGRKLIDIDHLICATPEYLEKHGIPTHPHD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-----G 240
           L +++ I  G+ I      F          G   IS      Y +      L +     G
Sbjct: 190 LKQYDCIYLGEQISDSKWKFQQ--------GNKSISVTVRGRYAANHTGVRLSAALQHLG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFI 290
           +A LP ++ +       LV+++ D    ++    ++  YP       KL  F  ++
Sbjct: 242 VASLPYFVARHALQQQTLVQVLPDWDFKTYYSGGLWLLYPPTRHVPPKLSVFIQYL 297


>gi|116686287|ref|YP_839534.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116652002|gb|ABK12641.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 13/289 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  +G+F+ AA+ + ++   +SR I+ LE  + I+LF R  R ++LTE+G + +  
Sbjct: 14  VFAAVVDAGTFSAAADVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVSLTEEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE         +    GKLRI     + + +L   L  F+  +P+++I+LI  
Sbjct: 74  VMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRAILGPRLDAFMDAHPELEIELIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK- 188
           +   D+ MD  D A+R  +P ++SSLI RKL+   +   AAP Y+     P   ++L+  
Sbjct: 134 DSLGDLVMDGFDLAVRFGEP-RASSLIARKLLDTGVVTVAAPSYIARRGRPAKPEDLEDR 192

Query: 189 -HNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242
            H  + F +  P+  + F W       R + + R   L VN   +++  C+ GSGIA   
Sbjct: 193 HHRCLEFRN--PETGKPFAWEFHRKRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249

Query: 243 -LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  + ++ D   L+ +  +     + +Y  YP       K +AF +FI
Sbjct: 250 LLGAEPLIADG-RLINLFPEWADERYPLYAYYPSRHHVPAKTRAFLDFI 297


>gi|260770161|ref|ZP_05879094.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|260615499|gb|EEX40685.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|315182676|gb|ADT89589.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 297

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 122/255 (47%), Gaps = 19/255 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S+  D LR F  VAR GSF  AA+ L +  S++SR+I  LE ++ ++L  R A  + LT 
Sbjct: 4   SYSLDDLRCFCAVARCGSFKDAAQSLGMPLSTLSRRIRQLEADLQLRLLNRDAHRVVLTS 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  + ++ ++ +L+    +L     +P GK+RI+  I+ G   L+    +FLL YPD
Sbjct: 64  TGEQYFQRSAALFDELDDIDEDLHRDKHQPQGKIRISAPINAGSQFLRTIFYDFLLQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKNCREP 180
           IQ+ L   N  IDI  +  D   R+  P+   + I R L  IH    A P Y +     P
Sbjct: 124 IQLDLSFSNSLIDIEAEGMDVVFRVGSPV-VDNWIARPLKHIHFILCAHPDYDISGITTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
              ++L  H  I    ++P  +      E+F++      P    R   L+V+  L +   
Sbjct: 183 ---EQLCGHPTIICRPMVPWQLVNQENGEEFDY-----HPQKGVR---LEVDEILMLTHA 231

Query: 235 CVLGSGIALLPDYIV 249
              G GI  +PDY  
Sbjct: 232 VKTGIGIGYVPDYFA 246


>gi|260432179|ref|ZP_05786150.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416007|gb|EEX09266.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 295

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 127/275 (46%), Gaps = 12/275 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD L  F +V  +G FT AA +L +S S +SRQ++ LE  +G+KL  R  R + LT+ G 
Sbjct: 4   WDGLEEFLMVVETGGFTAAARRLGVSASHVSRQVARLEDRLGVKLLARSTRVVRLTDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H   + +   LE           + +G++R++      +  +   L  F  L+P + +
Sbjct: 64  DYHARVAGLVAGLEEANQSAAGDRAQIAGRIRVSAAGPFAEQFVAPALARFASLHPKLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  +++ ++++ +  D AIR    +  S LI R+L T  M   AA  YL     P    
Sbjct: 124 TIDFNSRLLNLTEEGFDFAIRY-GTLTESGLIARRLATRRMVCVAARGYLDRHGRPTHPA 182

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           +L +H  LIT  D       +F    + D PI E R+    Q N+  +I+     G G+ 
Sbjct: 183 DLRQHQCLITNNDRW-----EFRDPGSGD-PI-EVRVHGRWQANNPHAILSAARQGLGVM 235

Query: 243 LLPDYIV--KDNPNLVRIMEDVITPSFTVYFCYPE 275
             P+  +  K  P L  I++    PS   +  YPE
Sbjct: 236 YAPEIFLGAKRPPELEPILQGFEDPSRASWIVYPE 270


>gi|120611274|ref|YP_970952.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120589738|gb|ABM33178.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 295

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 132/293 (45%), Gaps = 17/293 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ LR F  +AR+G+   AA +  +  ++++R+I  LE ++G  LF R A G  LTE 
Sbjct: 1   MDWENLRYFLELARTGTLAAAARRTGVEHTTVARRIQALEKQMGESLFAREAGGHRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQE---SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G  L          +ET  + ++    + + P+G +R+  T   G  +L  +L    L Y
Sbjct: 61  GRHL----LPAVEAMETAVLGVERVRPAGIGPAGLVRVGATEGFGTQVLAPHLARLTLQY 116

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L+   + + +S   AD  I L +P + + ++  KL    +  Y    YL     
Sbjct: 117 PHLSVDLLALPRMLHLSRREADIVISLERPTRGAVIVS-KLADYTLRLYGQRDYLARRPA 175

Query: 180 PLSIQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               ++L  H  +++ D  L  K ++  + L   +R          +  S  +  +    
Sbjct: 176 IARREDLRHHAFVSYVDDLLFTKELQFLDQLVPPER-------FAFRSTSVAAQYEAVRA 228

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+G+ +LP ++   +P L R++ D    + T +   P   K   + +A  +F+
Sbjct: 229 GAGLGVLPAFLADSDPLLERVLPDEARFTRTFWMSMPAEAKYQARTQAVWDFL 281


>gi|90426366|ref|YP_534736.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108380|gb|ABD90417.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 297

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 117/271 (43%), Gaps = 6/271 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   SFT AA +L +SQS++S  I  LE  +GI+L  R  R +  TE G +L 
Sbjct: 10  LSAFVAVAEERSFTRAAAKLGVSQSALSHTIRELEARLGIRLLTRTTRSVAPTEAGERLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +    +++     L +   KP+G +RI       + +L   L   L  YP+I++++ 
Sbjct: 70  RTVAPRLAEIDAELAGLSDLREKPAGSIRITAGEHAAETVLWPALARLLKDYPEIKVEIC 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            DN   DI  +  D  +R  + +    +  R    + M A AAP Y      P   Q+L 
Sbjct: 130 SDNTFTDIVAERFDAGVRFGEQVSKDMIALRIAPDMRMAAIAAPSYFAQRPRPKRPQDLT 189

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  I     +P     + W      R +       L  N+    +Q  + G GIA +P+
Sbjct: 190 DHACINI--RLPTYNSLYAWEFEKAGRELKVRVEGQLIFNTLPLALQAALDGFGIAFMPE 247

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            +   +     LVR++ D   P    +  YP
Sbjct: 248 DLATSHLAAGRLVRVLGDWCPPFPGYHLYYP 278


>gi|330876977|gb|EGH11126.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 301

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 142/295 (48%), Gaps = 12/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPVFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPTYLAERGTPQQPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  + +G           W      +P+       ++ N+   +    + G GI  
Sbjct: 183 DLHSHECLPYGH-----SRHVQWRFQGSGKPVSLNVSGRMRANNGELLKDAALAGLGITY 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP +IV D     +LVR+++++     T+   YP+  + +  ++AF    FL+ R
Sbjct: 238 LPTFIVGDALRAGSLVRVLDELRPEPLTLSAVYPQHRQASRLVQAF--IAFLRER 290


>gi|220922929|ref|YP_002498231.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219947536|gb|ACL57928.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 306

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 140/297 (47%), Gaps = 10/297 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L VF  V  +G F+ AA +L++S + +S+ +  LE  +G +L  R  R ++LTE G   
Sbjct: 6   SLTVFGRVVEAGGFSAAARRLNMSVTMVSKHVQALEDRLGARLLNRTTRKVSLTEVGQAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +S++  +L+            P G+LR+ T   + +  +   L+E+L  YP + + L
Sbjct: 66  YERSSQILAELDEADRIASALHATPRGRLRLHTAGHISR-FMAPVLREYLARYPAVTVDL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+  D  D AIR   P   S LI R+L         AP+YL     P    +L
Sbjct: 125 TVGDRMVDLIEDGYDLAIRTTPP-PDSGLIVRRLTPWRHVLTCAPNYLDAHPAPFQPGDL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN + +    P   +++++ ++   P        +  NS   +    + GSG+ L P 
Sbjct: 184 AHHNCLRYA-FYPYG-DEWHFESSDGGPTAVKVTGNMVSNSADLLRLLALDGSGVFLAPT 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
           ++V ++    +LVR++ +     F +   YP     + K+++F + +   F + R W
Sbjct: 242 FLVGEDVEAGSLVRLLPEYKPVEFAINAIYPHRRHLSTKVRSFLDLLSERFAEHRHW 298


>gi|114771037|ref|ZP_01448477.1| Transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114548319|gb|EAU51205.1| Transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
          Length = 305

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 130/272 (47%), Gaps = 10/272 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  VARSGS + A+  L +  +++ R+I+ LE  +  KLF +  RG  LT+ 
Sbjct: 2   LNWDDYRIFIDVARSGSLSAASISLKIDAATVGRRITRLENALNSKLFNKLPRGYQLTQA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L      +    +  +  LQ++S   SG  RI     L   +L   + +    +P++
Sbjct: 62  GNDLKEHIENIERTEKIARGSLQKASESISGNFRIGAPDGLSNFVLPSVISKIQNKHPNL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQ++   +  ++S   AD AI +  P +    + +K+V  ++H  A   YL+      S
Sbjct: 122 NIQILSLPRVFNLSRREADLAIMVTPP-KKGRFVTKKIVNYNLHLAAKKTYLEKFPNIKS 180

Query: 183 IQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +L  HN+I +   IP  + D   ++L+ V  P   P +S    NS    MQ   LG G
Sbjct: 181 KTDLKNHNIIGY---IPDLIFDPTLDYLSEVT-PNRTPNLSS---NSVAVQMQMLNLGIG 233

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFC 272
           I L  D+ +   P+++ I+++ I      Y  
Sbjct: 234 IGLAHDFALAHYPDIIPILKNKINQERGFYMV 265


>gi|58040534|ref|YP_192498.1| transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58002948|gb|AAW61842.1| Transcriptional regulator [Gluconobacter oxydans 621H]
          Length = 305

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 148/305 (48%), Gaps = 30/305 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   + ++++F  V  SGSF+ AA     + S++S+ I  +E  +G++L  R  R L++T
Sbjct: 1   MDNRFGEMKIFLRVVESGSFSEAARLSMTTPSTVSKLIGRVENRLGVRLVERSTRRLSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   +     +  +L+  +  L + +V+ +G +RI  ++  G   L+  L  F   YP
Sbjct: 61  PEGLAYYDRAQALIAELDDMEGFLSKKTVQLTGTVRINASVAFGTLALEPLLPPFWDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + L L ++  D+ +D  D A R+ K +Q SSL  R L ++      AP YL+    P
Sbjct: 121 DIVVDLSLSDEMTDLYLDRTDIAFRVGK-LQDSSLTARHLGSVPRLIVGAPDYLERFGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT----------VDRPIGEPRISCLQVNSYLS 230
            ++ +L+ H  + F         +F   A           VDR +  P    L  N+  +
Sbjct: 180 ETVDDLEHHRCLGF---------NFRRAAPVWPLQERGRIVDRIVQGP----LLANNGET 226

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKA 285
           + +  + G+G+A L +Y V+++    R++E V+T S T     ++  Y    +   +++ 
Sbjct: 227 VRRAAIRGAGLARLAEYHVREDLAAGRLVE-VLTESGTRDEEEIHALYQGGKQVPQRIRV 285

Query: 286 FRNFI 290
           F +F+
Sbjct: 286 FLDFV 290


>gi|312959458|ref|ZP_07773975.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311286175|gb|EFQ64739.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 302

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 9/275 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L  F V+  +GSFT AA+QL  S+  +S++IS LE +  + L +R  R L+LT  G
Sbjct: 3   EMDDLAAFAVLIEAGSFTVAAQQLGCSKGQLSKRISQLEAQFCVVLLHRTTRRLSLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +  +++  +  L       +G +R+   + LG+    G L EF   YP +Q
Sbjct: 63  AALLPQAQALVAQVDRARQALARLKDDLTGPVRMTVPVSLGETFFDGLLLEFSKQYPQVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L+N   D++ D  D  +R    + +  L+ + L+  H    A+P YL+   EP + 
Sbjct: 123 IELELNNSYRDLARDGFDLGVRA-GALDNERLVAKPLLAWHEMTCASPAYLEQHGEPQTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
            +L  H  +    L         WL      +   ++S     N Y  + +  ++G+GIA
Sbjct: 182 ADLAAHRCL----LNSHYSGREEWLYHQRHELLRVKVSGTFASNHYNLLKKAALVGAGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            LP Y++     +  L  ++ D  T S  +Y  +P
Sbjct: 238 RLPSYLLPAELADGRLRCLLRDYQTRSLPMYLVHP 272


>gi|288961457|ref|YP_003451796.1| hypothetical protein AZL_b05890 [Azospirillum sp. B510]
 gi|288913765|dbj|BAI75252.1| hypothetical protein AZL_b05890 [Azospirillum sp. B510]
          Length = 327

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 102/187 (54%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  + SF+ AAE L L ++S++  +  LE  +G++L  R  R L+LT  G+   
Sbjct: 7   MRVFIRVVEANSFSKAAETLGLPRASVTTTVQNLEAALGVRLLQRTTRKLSLTLDGAAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  +++  +     +   P G+LR+     +G+ ++  ++ EF   YPDI + L 
Sbjct: 67  EGASRILSEIDEIESTFTSARKTPRGRLRVDMPGSIGRLVIIPSIHEFHAKYPDIDLMLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DC +R+ + +  SSL+ R++  I     A+P YL    EP +I++L+
Sbjct: 127 LGDRAVDLIQEGVDCVVRVGE-LADSSLLARRIGAIQQITCASPAYLAEHGEPRTIEDLE 185

Query: 188 KHNLITF 194
           +H  + +
Sbjct: 186 RHIAVNY 192


>gi|331656361|ref|ZP_08357323.1| LysR-family transcriptional regulator [Escherichia coli TA206]
 gi|331054609|gb|EGI26618.1| LysR-family transcriptional regulator [Escherichia coli TA206]
          Length = 288

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 7/269 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           ++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G ++  
Sbjct: 1   QIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAGERIIA 60

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  +LE     L + +  PSG +R++      ++L+   LK FL  YP+I ++L++
Sbjct: 61  CLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEINVELVV 120

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           DN  +DI     D  IRL + +    +  R    + M    AP Y      P +  EL  
Sbjct: 121 DNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETPHELQN 180

Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I     +P     ++W      +P+       L  +     +   + G GIA +P+ 
Sbjct: 181 HRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIACVPED 238

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCY 273
           +V+   ++  L++++++   P+F  Y+ Y
Sbjct: 239 MVQEYIESGKLIQVLQE-WCPTFPGYYLY 266


>gi|299771720|ref|YP_003733746.1| transcriptional regulator [Acinetobacter sp. DR1]
 gi|298701808|gb|ADI92373.1| transcriptional regulator [Acinetobacter sp. DR1]
          Length = 298

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 138/294 (46%), Gaps = 18/294 (6%)

Query: 6   DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L+ F++   VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+ 
Sbjct: 2   DRLQQFFIFSEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPDI
Sbjct: 62  GQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYSRYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL   +   D+     DC +R+ + + SSSLI R +  + M   A+PHYL+    P  
Sbjct: 122 HLQLNSSDDMTDLIEKGIDCVVRVGE-LDSSSLIARLIGHLVMVNCASPHYLEQYGIPEQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + +L +H LI +   + +    F   N    +D        S L VN+  + +     G 
Sbjct: 181 LGDLSQHKLINYAGAVGEKQGIFLYQNGTVMID--------SALSVNNTEAYVAAACAGL 232

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP Y V+D     +LV ++      S  +   YP       +L+ F N++
Sbjct: 233 GIIQLPYYDVQDKIEQGSLVEVLSAHTAQSLPLNILYPNRSYIPKRLEIFMNWV 286


>gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074714|gb|ADJ64113.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 304

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 6/210 (2%)

Query: 2   SFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           SFD      + +F   A  GSFT AAE L L+ +S+SR IS LE+ +G++LF R  R + 
Sbjct: 3   SFDPVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQIR 62

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT +G        +   ++   +  L      PSG LRI+         L   L  F   
Sbjct: 63  LTREGELYRDQCQQALEQIADAERILTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQQA 122

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP I+++L + N+ +D   +  D AIRL  P   S LI   L    +  +AAP YL    
Sbjct: 123 YPQIEVELSIANRVVDFVEEGYDLAIRLGVP-PDSRLIAHTLEEATLGLFAAPAYLARRG 181

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           +P SI EL++H+ I F  ++P       W+
Sbjct: 182 QPRSIAELEQHDCIQF--ILPSSGRAMPWI 209


>gi|300717319|ref|YP_003742122.1| regulatory protein, LysR-family [Erwinia billingiae Eb661]
 gi|299063155|emb|CAX60275.1| Regulatory protein, LysR-family [Erwinia billingiae Eb661]
          Length = 300

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 144/288 (50%), Gaps = 18/288 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG----SK 65
           VF  VA + SF  A   L LS S++ + ++ LE ++G++LF+R  R +TLT +G    ++
Sbjct: 9   VFVQVAETRSFVSAGRLLGLSASAVGKNVARLEEKLGVRLFHRSTRSITLTAEGLLFLAR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R+ +E+    E   +EL ++   PSG+LRI  ++ L  +L+   L +F+  YP+I + 
Sbjct: 69  CRRIIAEI----EAAHLELSQARSNPSGRLRI--SLPLVSSLMLPVLGDFMRQYPEISLD 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D+  +  D  IR+ +P   S L  R+L        A+P YL     P S  +
Sbjct: 123 LDFTDNLVDVIQEGFDAVIRMGEP-ADSRLSARRLGYFGSVLVASPAYLLEKGLPQSPDD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+ + +       +E  NW   +   +  P    +  N+  + + + + G GIA LP
Sbjct: 182 LLQHSCLHYRFSHTGKLE--NWPLRLAGHLTLP--VSMVCNNIETRVCFALRGLGIAWLP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D+ V+       LV ++++ I    T +  +P +   + K++   +F+
Sbjct: 238 DFAVRALIAEGELVSVLDEFIDWQGTFHILWPASQHASPKIRVLVDFL 285


>gi|226943787|ref|YP_002798860.1| transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226718714|gb|ACO77885.1| transcriptional regulator [Azotobacter vinelandii DJ]
          Length = 300

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V  +GSF+ AA QL  S S+IS+ +  +E  +G++LF R  R L LT++G   
Sbjct: 7   EMQVFVRVVETGSFSEAARQLLTSPSTISKLVLRIEQRLGVRLFERSTRRLALTDEGRLY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +  +L+  +  L   +    G +R+  ++  G   ++  L  F   +PDI + L
Sbjct: 67  YERSQALLAELDDIEQALARGANHARGTVRVNASVGFGTWGIEPLLPAFWEAHPDILVDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+ ++  D A R+   +  S+L  RK+        AAP YL+    P  I++L
Sbjct: 127 SLSDDLVDLYLERTDIAFRV-GALADSTLRARKIGVAWRRMVAAPAYLERHGLPARIEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           D+HN + F       +    W L    R +       L  N+  ++ +  + G+G+A L 
Sbjct: 186 DRHNCLGFNFRRASPV----WPLRQGGRIVDRMVRGNLLANNGETVRRLAIAGAGVARLA 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D+ V  +     LV ++ +       V+  YP       +++ F +F+
Sbjct: 242 DFHVDHDIAAGRLVEVLAESGHDCEEVHALYPGGRHPPQRVRVFLDFM 289


>gi|327188228|gb|EGE55448.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 306

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 119/245 (48%), Gaps = 6/245 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V + G F+ AA  L ++ S++S+ I+ LE  +G +L  R  R LTLTE+G   
Sbjct: 11  EMEVFARVVQDGGFSAAARNLDITPSAVSKLIARLEARLGTRLLVRTTRALTLTEEGEAY 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H    ++  +L          +V+  G+LRI TTI  G   +   + +F+   PD+ + L
Sbjct: 71  HHAALKILQELNDADQAAAGGAVR--GRLRINTTIPFGTMFVAPVIPDFIARNPDLIVDL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D AIR+   +  S LI RKL        A+  YL  C  P++  +L
Sbjct: 129 SFTDGIVDLVAEKTDVAIRMGD-LPDSGLIARKLGQSRRVVCASADYLVRCGFPVNPADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + H+ +TF     +    F       + + +P    + VN+  ++ Q  + G+GIA +  
Sbjct: 188 EHHDCLTFNFRRARPSWPFRCGG---QDVAQPVKGSIVVNNGETMKQMALAGAGIARVGL 244

Query: 247 YIVKD 251
           + V D
Sbjct: 245 FHVAD 249


>gi|307941746|ref|ZP_07657101.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307775354|gb|EFO34560.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 316

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 142/290 (48%), Gaps = 16/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + A  +++LS + +S++I  LE ++G +L  R  R + +TE G   +
Sbjct: 9   MEIFARVVSAGSMSAAGREMNLSPAVVSKRIRRLEDKLGTRLLQRTTRQIAMTEAGQGFY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  + + S K  G L++AT+   G+  +  ++++FL  +PD+ + L 
Sbjct: 69  ERVIAILASVEEAEEFVSQGSAKARGTLKVATSTSFGRLHIAPHIQKFLDAHPDMSVNLD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           L++  +DI  +  D AIR+ + +  SSL+ R+L  +H    A+P YL    EP SI +L 
Sbjct: 129 LNDDFVDIVGEGYDLAIRIAE-LSDSSLVARRLAPVHRILVASPDYLAKHGEPHSISDLA 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + H  +   +  P  +   + + TV         + ++ NS   + +  + G GIAL   
Sbjct: 188 ESHLTLAAANQGPWKLVGPHGIETVK------TTAPVKTNSSEVVRECLLAGVGIALRST 241

Query: 247 YIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
           + V   P L      ++ P +       +Y  YP       K++AF +F+
Sbjct: 242 WDV--GPELRDGKLRMVLPDYRASRDVGLYAVYPSRQFLPVKVRAFIDFL 289


>gi|254452613|ref|ZP_05066050.1| transcriptional regulatory protein [Octadecabacter antarcticus 238]
 gi|198267019|gb|EDY91289.1| transcriptional regulatory protein [Octadecabacter antarcticus 238]
          Length = 294

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 3/191 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VAR+ +F+ AA +L +  S++SR+I+ LE  +G +L  R  R + LTE G+      
Sbjct: 7   FVEVARTRNFSQAAARLGIPASTLSRRIAELEAGLGTQLLVRTTRRVDLTEAGALFLSRC 66

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E+       + EL E + +P G LRI+ T D     L   + EF   +P+I + L L+ 
Sbjct: 67  EEIVEAARGARAELSELTRRPRGTLRISVTPDFATTFLAPVIVEFCERHPEIDLHLDLNP 126

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  DI  +  D AIR+  P +   L  RKL+T     YA+P YL     PL+  +L  H 
Sbjct: 127 RRADIMAEGVDVAIRIGMP-REPYLYARKLITARRGLYASPAYLAAAGTPLTPLDLAVHR 185

Query: 191 LITF--GDLIP 199
            ++   G+ +P
Sbjct: 186 CLSVSSGEPLP 196


>gi|293395380|ref|ZP_06639664.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422064|gb|EFE95309.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 318

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 103/191 (53%), Gaps = 3/191 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  SGSF+ AA +L  + S+ISR +S LE  + ++L +R  R L L+EQG  +
Sbjct: 17  EMAVFAQVVESGSFSAAARRLGATPSAISRSVSKLEQALNLRLLHRTTRKLRLSEQGEAV 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++            + S +P G + ++    +G  +L  ++ EFL  YP + ++L
Sbjct: 77  FQHCQQMLAAANAAMTVCGQGSAEPEGLVSVSVPKAVGHFVLHPHMPEFLRRYPQVDVRL 136

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L+++ +D+  D  D A+R+  +P  S  LI R+L+T+     A PHYL     P   Q+
Sbjct: 137 RLEDRYMDLIEDRVDLALRITDRP--SPGLIGRQLMTVDHLLCATPHYLAQHGTPQQPQD 194

Query: 186 LDKHNLITFGD 196
           L +H+ I  G+
Sbjct: 195 LAQHSCIYLGE 205


>gi|225077091|ref|ZP_03720290.1| hypothetical protein NEIFLAOT_02144 [Neisseria flavescens
           NRL30031/H210]
 gi|224951648|gb|EEG32857.1| hypothetical protein NEIFLAOT_02144 [Neisseria flavescens
           NRL30031/H210]
          Length = 296

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AA+QL +S +  S+ ++ LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAADQLDISTAMASKHVNHLENTIQAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +      +   L E+   YP + + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGGNMSAWLAEYRQRYPKVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ ID+  +  D A+R+ K   S SLI + L  I     AAP YL     P + + + 
Sbjct: 127 LDNRHIDLIAEGFDLALRVSK-TPSPSLIVKPLAKIEFVLLAAPDYLARHGTPDTPEAVM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I       +   +    AT ++ I       ++ ++ L I +    G+GI   P +
Sbjct: 186 QHQAI-LPSYTNQQDREITHRATAEKAILHLS-PVIRSDNTLMIRELIKAGAGIGYQPLW 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+    +  L++++ D    +  +   Y +    + K+++F +F+
Sbjct: 244 AVQQELKDGTLIQLLPDYTIWADQLNATYVDRAFLSAKVRSFIDFL 289


>gi|86360342|ref|YP_472230.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284444|gb|ABC93503.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 299

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 144/299 (48%), Gaps = 18/299 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  VA   SFT AA++L +S +  S+ +  LE+ +G +L  R +R ++LTE G    
Sbjct: 7   LRVFCTVAELKSFTAAADRLGVSPAMASKHVMQLESRLGTRLLNRTSRHVSLTETGRLYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T E+  +L+  +  + + +V P G L+++  +    +     L  +   YPD+ + L 
Sbjct: 67  NQTREMLERLDEVEDAISKVTVAPRGTLKLSAPVWAATSYFTDMLAAYNRRYPDVCLDLD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L  + +++  +  D A+R     +    L+ R L  +     A+P YL+    P ++ EL
Sbjct: 127 LSGRLVNLVDEGFDLALRATSQDRLDPGLVARLLTNVQFRLMASPDYLERTGRPRNVGEL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
           + H L+ +  +      +F    +++ P G  +I   + +Q ++   +    + G G+A 
Sbjct: 187 NGHALLRYSGV------NFGESMSLEGPDGPHKITFRTAMQSDNETILHLAALRGMGLAF 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LP ++ + +    R+  +++ P+       T+Y  YP     + K++ F +F+    R+
Sbjct: 241 LPTWMAEQDIEAGRL--EIVLPAIMLGFNSTLYAVYPSRKYLSAKVRTFIDFLTASTRE 297


>gi|269967857|ref|ZP_06181901.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827562|gb|EEZ81852.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 309

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 143/274 (52%), Gaps = 8/274 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +KL +   V+++GSF  AA+ +++ +S +S+ I  LE  +G++L  R  R L+LT+ G +
Sbjct: 5   NKLHLLLEVSKAGSFAKAADGMNIDRSVLSKHIKQLEEHLGVRLLNRTTRSLSLTQVGKQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   L+ TQ   +    +PSGK+RI+++   G+  LQ ++++FL  YP   ++
Sbjct: 65  IVEKADQISQLLDDTQQIAENFQTEPSGKVRISSSTLFGKLYLQPSIEKFLHKYPKASVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD+  +D+     D A R+  P++ SS++ RKL        A+ + ++    P +  E
Sbjct: 125 LMLDDLHVDVIRSNFDIAFRI-GPMRDSSMVARKLAKNTTAIIASRNLIEKHGNPETPDE 183

Query: 186 LDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L K   I +  G+ I   ++ ++   + D     P      VN    I++    G G AL
Sbjct: 184 LVKLPFIIYSNGNFIVDKLKFYDKEKS-DGLDTYPISGSYMVNEAELIIKSVKSGLGAAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSF-TVYFCY 273
           +  +++ +N    NLV+++ +  T  F  +Y  Y
Sbjct: 243 IGQFMLPNNLESSNLVQLLPEYETQDFGDIYAMY 276


>gi|330969856|gb|EGH69922.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 298

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA + SFT A ++L +S S I + I  LE  +G++LF+R  R + LT +GS     
Sbjct: 9   VFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEGSIFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +L+  ++EL  +   P G+LRI  ++ L   L+   +  F+  YPDI++ +   
Sbjct: 69  CRRILSELDAAEMELSNARDLPRGRLRI--SLPLVSGLVMPVIINFMRTYPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P    +L +H
Sbjct: 127 DRMVDIIEEGFDIVLRTGDP-GDSGLMSKRMGSFQLRIVGAPDYFARHGIPRHPGDLSQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +      P      +W   + R  G   +   Q    N+   ++     G GIA LPD
Sbjct: 186 ACLLHK--FPSTGRFEHW--PLRREAGVDDLELPQAMVCNTTEILVDVARAGLGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++     N  L+ +++D    + T    +P +   + +L+ F +F+
Sbjct: 242 FMISSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288


>gi|163758928|ref|ZP_02166015.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162284218|gb|EDQ34502.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 299

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 140/293 (47%), Gaps = 18/293 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE ++G  L  R  R  +LTE G   
Sbjct: 6   RIRAFIDVVEAEGFSAAARKVGRSKALLSKYVRELEDDLGALLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R  S++  +++     ++E S    GK+RI+         +  +L +F   +PD+ +++
Sbjct: 66  YRSASDILKEIDNLADLVREGSKDLKGKIRISAPRTFVDAAVGQSLIDFAAAHPDVTLEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I D++ +D+  +  D AIR+ + ++ S LI RKL T  + A A+P +L+         +L
Sbjct: 126 ISDDRFVDLVEEGYDLAIRITR-LEDSGLIARKLSTFSLIACASPEFLEKTGPITHPSQL 184

Query: 187 DKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
                I  T G  +       NW    D P G           +VNS L+ M+    G G
Sbjct: 185 ADVPCIIDTNGRFLN------NW--RFDNPDGSSASVTVSGSFEVNSPLAAMRAAEAGMG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +LPD++ ++      L  I+ + +     +Y  YP       K++AF +F+
Sbjct: 237 VTILPDFVFREREKTGTLKPILTEFLPTDRGIYAIYPHRRYLPAKVRAFVDFL 289


>gi|304396464|ref|ZP_07378345.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304355973|gb|EFM20339.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 305

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 123/250 (49%), Gaps = 8/250 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD L    V+A  GSFT AAE+L +S++++S++I  LE   G+ L  R  R + LT  G 
Sbjct: 10  WDHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKELEEMAGVLLVQRTTRSVRLTSAGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL     E + ++E +   +++++    G +R+   +   +  L   + EFL  YP +++
Sbjct: 70  KLVEELREPFSRIEQSFFSVRDTAGPVRGLVRMTAPVAFARQQLVPIIGEFLRDYPQVRL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ + +S +  D AIR    +  +  +   L        A+P YL     P S Q
Sbjct: 130 QLDVTDRIVSLSSEGFDLAIRHSDTLPETH-VALPLCDTRTLLVASPAYLSLQGVPQSPQ 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           +L +HN + +    P+ +E   W    T D    + RI      N+  SI    + G GI
Sbjct: 189 DLKQHNCLYY----PRGIESPRWRFETTTDSEQVQVRIQGSFATNNSESIRDAALQGLGI 244

Query: 242 ALLPDYIVKD 251
           A+LPD+  ++
Sbjct: 245 AMLPDFSARE 254


>gi|284920084|emb|CBG33143.1| LysR-family transcriptional regulator [Escherichia coli 042]
          Length = 294

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 133/282 (47%), Gaps = 21/282 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L  NL  F   YPDI+
Sbjct: 66  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPNLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYC 235
            +L  H  I   F D        + W    D      RP G+  +S    +SY+   +  
Sbjct: 186 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHRPEGQWALS----DSYME-AEAA 235

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            LG G+A +P  +V D+     L+R+++        ++  YP
Sbjct: 236 RLGLGLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 277


>gi|146313550|ref|YP_001178624.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145320426|gb|ABP62573.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 299

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 128/273 (46%), Gaps = 11/273 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+ L L + S+SRQI  LE  +G +L +R  R ++LT+ G   +
Sbjct: 7   MQLFIRVAELESFSRAADTLGLPKGSVSRQIQALENLLGTQLLHRTTRRVSLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+      Q      SG+LR+   + + +NL+   L  FL  YP I+++L 
Sbjct: 67  ERAKDLLANLDELDGLFQSDPTSISGRLRVDMPVGVARNLVIPKLPSFLQQYPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   ++ S LI R L  + +   A+P YL     P ++ +L 
Sbjct: 127 SSDRLVDVIREGFDCVVRV-GTLKDSGLIARTLGKLSIINCASPDYLARFGYPENLDDLA 185

Query: 188 KHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H +I +       P+  E FN   T+    G      L VNS  +    C+ G GI  +
Sbjct: 186 SHAVIHYAVNLGTRPQGFEFFNGDTTLWVKTG----GILTVNSTETYHAACLAGLGIIQV 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           P   V++      +V I+         V   YP
Sbjct: 242 PRVGVREALRAKKMVEILPQYRAEPMPVSLIYP 274


>gi|50121772|ref|YP_050939.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612298|emb|CAG75748.1| lLysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 315

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 128/276 (46%), Gaps = 17/276 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GS T AA +L +S++  +R I+ LE   G++L +R +R L LT  GS++ 
Sbjct: 7   MQVFVDVVELGSLTAAANKLDISRAMATRYIASLEKSFGVRLLHRSSRSLGLTSAGSEIL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +   + L+  S +P+G +R+A++I  GQ+ L   ++ +   YP + ++++
Sbjct: 67  SYCRQILALNDDIGVALESKSQEPNGLIRVASSISFGQSYLADAMRRYASQYPKVAVEMV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  I++     D AI +   +   S+I R+L        AAP Y+     P    +L 
Sbjct: 127 LKDASINLVEQRIDLAIHVGNKLD-PSVISRQLTRCASVVCAAPDYMARNGTPQRPDDLR 185

Query: 188 KHNLI---TFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +HN +    FG++     P    +   +  VD             N  + ++   + G G
Sbjct: 186 QHNCLHHTRFGNVWRFQRPSAKGENLVMDEVD------VTGNFAANDSMVLLHAALAGGG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           I  LP +          LVR++ D + P   VY  Y
Sbjct: 240 IVHLPAFTTDPYLRTGALVRVLTDYLLPELGVYALY 275


>gi|309782093|ref|ZP_07676823.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308919159|gb|EFP64826.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 300

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 128/294 (43%), Gaps = 16/294 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS + AAE L +S++ ++R ++ +E   G +L +R  R + LT  G      
Sbjct: 9   VFVAIVERGSLSAAAEALDMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTPAGEATLAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++        +     +  P G LRIA    L Q  L   +  +L  YP   + L++D
Sbjct: 69  CRQMLEIASQMAVADGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQTAVDLVVD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+  ++  +  D A+R+   +   +LI R L        AAP YL     P  +Q+L  H
Sbjct: 129 NRTTNLVEERIDLAVRITNDLD-PNLIARPLGMCESVVVAAPSYLAAHGTPRRVQDLAVH 187

Query: 190 NLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           N +T   FG  + K  E     A  D P+G      L  N  + ++     G+GIAL P 
Sbjct: 188 NCLTYTYFGKSLWKFTEAKTG-APSDVPVG----GNLSANESMVLLAAAREGAGIALQPV 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +       +  LVR++ D +  +  ++  Y    +    L+A  +F+     DW
Sbjct: 243 FAAAPLIASGQLVRLLPDYLPQALGIHGVYSSRRQMPAALRAMLDFLV----DW 292


>gi|170721994|ref|YP_001749682.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759997|gb|ACA73313.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 306

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +   GSF+ A  QL    + +S+++S LE  +GI+L  R  R L  T++G +
Sbjct: 10  DELATLLALHEQGSFSAAGRQLARHPTVLSKRLSALEQRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E    +   + E  E +    G+LR+A    +G+  L G L +F+L +P + ++
Sbjct: 70  LVVRVREASRLITEAEQEATEGAASVRGRLRLALPAAMGRRWLSGMLADFVLAHPQVTLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++ +D+  +  D AIR+   +  + L+  KL        A+P YL    EP   ++
Sbjct: 130 AEYADRFVDLVGEGFDAAIRI-GELADNRLVASKLCDHVRILCASPDYLARQGEPAKPED 188

Query: 186 LDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
           L KHN + F  L   P+      W  T        +IS  L+ N   ++++    G GI 
Sbjct: 189 LSKHNCLGFSGLRSFPE------WRLTRGNHQVSVKISGSLRGNDNEALLEAARRGVGIL 242

Query: 243 LLPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              D+++ ++     L+R++    +  +  +Y   P A  NT  L AF+ ++
Sbjct: 243 AGGDWLMGEDLAAGRLLRVLAQWELDAAAGIYLVRPSARLNTASLGAFKAWV 294


>gi|313669233|ref|YP_004049517.1| LysR-family transcriptional regulator [Neisseria lactamica ST-640]
 gi|313006695|emb|CBN88163.1| probable LysR-family transcriptional regulator [Neisseria lactamica
           020-06]
          Length = 303

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 20/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSRTL-SPSLIARPLAEIEFALLASPDFLRRNGVPKTPEEVA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEP-RIS---CLQVNSYLSIMQYCVLGSG 240
                     +P  +  +      D   +  G+  R+     ++ ++ L + +    G+ 
Sbjct: 186 G---------LPAVLPTYTNRQQPDLTRKSDGKKYRLELNPVIRTDNTLMMREMIKAGAC 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   P + V+ +    +LVR++ +  TP+  +   Y +    + K+++F +F+
Sbjct: 237 IGYQPFWAVEHDLRCGSLVRLLPEYATPTVRLNAVYADRAFLSAKVRSFIDFL 289


>gi|325921975|ref|ZP_08183780.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325547525|gb|EGD18574.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 338

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 21/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLTKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
             EL  H  ++  +      ++ +    +  P GE R   LQ    L+   + +L     
Sbjct: 188 PSELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239

Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
            G GI +LP+ +       VR  E +V+ P +++    C+       G L A R FI
Sbjct: 240 DGFGITMLPETVCA---QAVRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293


>gi|56460399|ref|YP_155680.1| LysR family transcriptional regulator [Idiomarina loihiensis L2TR]
 gi|56179409|gb|AAV82131.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR]
          Length = 303

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 142/299 (47%), Gaps = 20/299 (6%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MSF D     +F  V   GS + A+ +L L +S+ISR+++ LE E G +LF+R   GL L
Sbjct: 1   MSFPDVTNYYLFAQVMACGSISAASRELGLPKSTISRKMALLEQEQGTRLFHRSRSGLKL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G +       +    E+ Q   Q    KP GK+ I+    L Q+LL   L EF+ LY
Sbjct: 61  TDVGREFLVHCERLVSAAESAQQVTQRLLDKPRGKVEISAPYALSQSLLVQVLPEFMSLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL--KNC 177
           P+++IQL++ N+ +++  +  D A+R+RK I+ SSLI R +       Y AP  +   + 
Sbjct: 121 PEVEIQLVVTNRPVNLIEEGIDIALRVRKNIEDSSLIARPISQAPQTLYIAPDLINQNSI 180

Query: 178 REP---LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            EP   L+ + L  H   T G    + +        +     +PR   L  +  + + + 
Sbjct: 181 TEPEDLLTFEHLSMH--YTNGRYGYELIHSSGLQKNIRI---KPR---LITDDMIVLREA 232

Query: 235 CVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +   GI  LP+Y+  D  N   LV ++ D   P   ++  Y       G L A R  I
Sbjct: 233 AIKKLGIVALPNYLCNDAVNSGELVPVLTDWHLPIGIMHITYSH---RRGILPAVRVLI 288


>gi|187734166|ref|YP_001882210.1| LysR family transcriptional regulator [Shigella boydii CDC 3083-94]
 gi|187431158|gb|ACD10432.1| transcriptional regulator, LysR family [Shigella boydii CDC
           3083-94]
 gi|332095848|gb|EGJ00856.1| hypothetical protein SB359474_1698 [Shigella boydii 3594-74]
          Length = 299

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + +NLL   L EFL L+P I+++L 
Sbjct: 67  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|332975624|gb|EGK12513.1| LysR family transcriptional regulator [Psychrobacter sp.
           1501(2011)]
          Length = 302

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 136/273 (49%), Gaps = 6/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  +GS T AAEQL++++S++SR +  LE  +  +L  R  R  TLTE G K
Sbjct: 5   EDMTMFIRVVDAGSITKAAEQLNIAKSAVSRCLKELEMRLNTQLISRTTRNSTLTEAGQK 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  ++E    ++   + +  G +R+   +  G   L   +  +   +P +  +
Sbjct: 65  YYQEACSILGEVELLNEKISGVASQLEGTMRLTAPLSFGLMHLNDIIHNYAQQHPQLSFE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  + AIR+ + ++ SS   ++L  I     A+P Y+K    P SI+ 
Sbjct: 125 LDFSDRQIDLVEEGYEMAIRIGE-LKDSSYQAKRLTVIRRVLCASPEYIKQAGIPDSIES 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+ + +G L  K  E     AT  R   E   S ++ N+   ++   + G GIA +P
Sbjct: 184 LKQHSFLQYG-LQNKQGEILLIDATGQRHKIETS-SRIKANNGNFLLDMAIKGHGIAYMP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            +I  ++     LV +MED   P+ T Y  YP+
Sbjct: 242 TFIAYESLAKGELVPVMEDYHLPTLTAYAVYPK 274


>gi|288933113|ref|YP_003437172.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288887842|gb|ADC56160.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 299

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 126/278 (45%), Gaps = 21/278 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE L L + S+SRQI  LE+ +G++L +R  R + LT+ G   +
Sbjct: 7   MQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+      Q      SG+LR+   +   + L+  +L  FL  YP I+++L 
Sbjct: 67  ERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKLVIPHLPTFLQQYPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   ++ S LI R L  +     A+P YL     P S+++L 
Sbjct: 127 SSDRLVDVIREGFDCVVRV-GALKDSGLIARPLGKLTQINCASPDYLARFGYPQSLEDLA 185

Query: 188 KHNLITFGDLI---PKCME-----DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            H LI +   +   P   E        W+ T            L VNS  +    C+ G 
Sbjct: 186 DHALIHYASTLGVRPPGFEVVIDGAVRWVKTG---------GILTVNSTETYQAACIAGL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GI  +P   V++     +L  I+         V   YP
Sbjct: 237 GIIQVPRTGVREALRAGDLTEILPQYRAEPLPVSLIYP 274


>gi|160897111|ref|YP_001562693.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362695|gb|ABX34308.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 296

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 131/289 (45%), Gaps = 13/289 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR   VF  V   GSF  AA +L +S   + + +  LE  +G +L  R  R  +LTE 
Sbjct: 2   DKLRNMEVFMAVVEDGSFAQAARRLDISAVMVGKHVQQLEAHLGARLLQRTTRRHSLTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  + +V+ +L   +  ++ S   P G LRI+    LG +++   + ++ L  P +
Sbjct: 62  GRSFYEDSRQVFEQLRWAESAVERSRSAPQGLLRISAPTTLGNHVIAPLVADYQLANPLV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L +   D+  +  D A+R+  P+    L+ R L    M   AAP YL+    P  
Sbjct: 122 RVDLQLSDSMADLVGENIDVAVRI-GPVGGEGLVARPLQPYRMVIAAAPSYLRRRGHPRG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + +L +H+ +++            W+   D    +  P  + L+ NS   +    + G G
Sbjct: 181 VDDLARHDCLSYA----VWQRRSEWILRGDGSGSVQWPEDARLRCNSGDGLRHAALRGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + L P+ ++  +     LV +++D +     V+  Y    +   KL  F
Sbjct: 237 LILQPEVLLAADMAAGRLVPVLQDCVPLPRPVHLVYLPDRRQLPKLAQF 285


>gi|295689813|ref|YP_003593506.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295431716|gb|ADG10888.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 304

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 129/285 (45%), Gaps = 7/285 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           V   V   G F  AAE + L+ S +SR I+ LE++VG +LF RH R + LT+ G++ H  
Sbjct: 13  VMAAVVEHGGFARAAEVVGLTPSGVSRAIARLESQVGARLFDRHPRKVALTQAGARFHAE 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + +   +          S +  G+L+++      + +L   L E L  YP++   L + 
Sbjct: 73  VAPLLAAIGEAAETAAADSAQVRGRLKLSVDPWFARIVLAPRLPELLARYPELSFDLRVT 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N   D+     D AIR   P+  + LI RKL+   +   AAP YL+    P    ++  H
Sbjct: 133 NAFEDMLGGGVDIAIRFGPPL-GAGLIARKLLETRVLTVAAPAYLERRPRPREPADIAGH 191

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           + I F D  P+    F W      + +     S L ++   + +  C  GSG+    +  
Sbjct: 192 HAILFRD--PQSRRPFTWEFQRGGKAVEVSVTSRLMLDDPSAALAACEAGSGLFQSFELG 249

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++   +   LV ++++     F +Y  Y       GK++ F +F+
Sbjct: 250 LESWLEGGRLVTVLDEWAEERFPLYAYYASRHHLPGKVRVFLDFL 294


>gi|149920140|ref|ZP_01908613.1| putative transcriptional regulator protein, LysR family
           [Plesiocystis pacifica SIR-1]
 gi|149819083|gb|EDM78520.1| putative transcriptional regulator protein, LysR family
           [Plesiocystis pacifica SIR-1]
          Length = 301

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 10/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D    F  +  +GS T AAE L L ++++SR+++ LE  +G++L +R  R +TLT  G  
Sbjct: 5   DGFEEFITIVDAGSLTAAAEVLDLPRATLSRRLAKLEQRLGVRLLHRTTRRMTLTPAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           LH+    +       + E++     P G LR++    L        L  FL  YP++ ++
Sbjct: 65  LHQRARVLVEGARDVEAEVRRLDGVPRGLLRVSVPSTLAHEFFARWLTAFLQAYPEVSLE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +  +  +D+  +  D A+R R PI   SLI R +      A A+P YL+    P +  E
Sbjct: 125 FVATSLHVDLVAEGFDLALR-RGPIDDPSLITRSMSVDTSIAVASPAYLERAGTPTTPAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244
           LD HN I       +    +  LA      G   +S     + + + +   L G GIAL+
Sbjct: 184 LDAHNCIVGYRAGRQPERRWPLLAG-----GSVTVSGSLATNDIELRRAVALSGLGIALI 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y      D   L+ ++ + +     V   Y E      K++AF +F
Sbjct: 239 SAYSAHANLDQGELIHVLPEHVGARERVNLVYVEREFLDPKIRAFVDF 286


>gi|325525033|gb|EGD02942.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 315

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G   
Sbjct: 6   NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD+ I+L
Sbjct: 66  LRRCRQILADVDRAEEEASCAHERPAGVLRLHSFASVGHHYVLPALTRYHAQYPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P   Q+L
Sbjct: 126 SLSQRMPDLFDGTSDTAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGAPAHPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H  +T   L         W+  ++ P G  +I     +Q N+  S+      G GI +
Sbjct: 186 GAHACLT---LCTPAFPTHEWV--LEGPDGVEQIRVAGPVQTNTAESLALAIRDGIGIGM 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   D   + +LVR++ + I     VY  YP            R FI  K R W
Sbjct: 241 LPLYSAIDALRDGSLVRVLPEHILQKMNVYALYPS-----------RRFIDAKVRTW 286


>gi|241206045|ref|YP_002977141.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859935|gb|ACS57602.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 303

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 134/287 (46%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G+FT AA+ L + +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++  +LE     L  S   PSG+LR+         ++   L +F   YPDI+I L 
Sbjct: 67  ERAAQIISELEELDGSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPDIRIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D   +  DCA+R   P    SLI R++  + M   A+P Y++    P   ++L+
Sbjct: 127 VGDRTVDYLAENVDCALRAGTP-ADQSLIARRVSEVEMITCASPSYIQKFGMPERPEDLE 185

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + +          F +    +     PR     VN   + +   + G GIA +P 
Sbjct: 186 ADHYTVNYFRAQNNRTLPFEFRRHNEVIETSPRY-IASVNDSRTYLTAALTGLGIAQVPI 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ ++      LVR++ D       +Y  YP     + K++ F +++
Sbjct: 245 FMAREPMARGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWL 291


>gi|170736588|ref|YP_001777848.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818776|gb|ACA93358.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 302

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 143/294 (48%), Gaps = 21/294 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RV+  +  +  F+ AA++L  + S++SRQ+  LE  +G++L  R+ R  +LT  G + +
Sbjct: 7   MRVYRSLVEAKGFSAAADRLDTTHSTVSRQLKLLEASLGVQLVNRNTRHFSLTPAGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  ++     ++ ++  +PSG LR++  + +G   +   L  F   YPDI++ + 
Sbjct: 67  DACVEILERVAAAAEDVTDTPGQPSGVLRVSIPLSVGTLEMPAWLPAFRTAYPDIRLDVS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D A+R+   +  S L+ + L        AAP Y+     P +  EL+
Sbjct: 127 CSDRFVNLIGEGFDVALRISSELPDSDLVAKTLAISDEILVAAPDYVARRGLPRTPAELE 186

Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241
           KH+L+ +  GD      +  +W   V  P G P        L++++  ++    + G GI
Sbjct: 187 KHDLLAYSGGD------DRISW--RVAPPSGAPVTVRLDGPLRIDAITALHAAALGGLGI 238

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFI 290
                + V ++    R++   I P  T+     Y  YP++     K++AF +F+
Sbjct: 239 GAFTHHTVSNDIAHGRLVP--ILPGHTLAKRRYYALYPKSRHVPPKVRAFVDFV 290


>gi|291616182|ref|YP_003518924.1| PtxR [Pantoea ananatis LMG 20103]
 gi|291151212|gb|ADD75796.1| PtxR [Pantoea ananatis LMG 20103]
 gi|327396421|dbj|BAK13843.1| HTH-type transcriptional regulator PtxR [Pantoea ananatis AJ13355]
          Length = 298

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 135/298 (45%), Gaps = 21/298 (7%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+F  W  + +F +VA  GSFT AAE+  L +SS+S++IS LE  +GI+L  R  R L L
Sbjct: 1   MAFRQWQDMALFALVAECGSFTAAAERAGLPKSSVSQRISQLEQRLGIRLLNRTTRQLNL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G +      E+    E  +  +      PSG+LRI +   +G  LL      FL  Y
Sbjct: 61  TFAGERYLLHCQEMMQASERAEQAIASLRENPSGRLRITSPAGIGATLLARCNAAFLRRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ + + + +   D+  D  D A+R  +P Q SSLI R++        AA  YL     
Sbjct: 121 PDVTLDISISDDIRDLVQDGFDLALRTGQP-QESSLIGRRVGYCQRSLVAAQAYLDQHPP 179

Query: 180 PLSIQELDKHNLI---TFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               Q+L  H  I    + + + K  + ++ WL           +    +   L   +  
Sbjct: 180 VTHPQQLAAHRCIAHRAWNEWVLKRHDQYHRWL-----------LPPAHLTDNLLYARES 228

Query: 236 VLGS-GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LGS GI LLP +++     +  LV+++ +       ++  YP    N+  L  +  F
Sbjct: 229 ALGSAGITLLPRFLIDGEMHDARLVQVLPEWEMEGNELWLVYPSRKLNSPALMKYIEF 286


>gi|82545885|ref|YP_409832.1| transcriptional regulator LYSR-type [Shigella boydii Sb227]
 gi|81247296|gb|ABB68004.1| putative transcriptional regulator LYSR-type [Shigella boydii
           Sb227]
          Length = 323

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + +NLL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|77458950|ref|YP_348456.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382953|gb|ABA74466.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 283

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 133/288 (46%), Gaps = 14/288 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  +R+F  +AR+GS   AA +L +S  ++ R++  LE   G   F R A+GL LT+ 
Sbjct: 1   MDWSDMRIFLAIARNGSLGGAARELGVSHPTVGRRLQVLEQTSGQAFFLRTAQGLVLTDS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++  +  ++ H     +  L     +P G LRI++      ++L   L E +  YP I
Sbjct: 61  GERILGLAQDMEHSALAIERRLAGHGDQPEGLLRISSADWFACHVLSPVLSELVHRYPLI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++I  ++  D++   AD A R+  P     ++ RKL T+    YAA H       P  
Sbjct: 121 VPEVIAGHRLFDLARRDADIAFRI-VPFTEPDIVHRKLTTLSYGLYAASH------APTP 173

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             + +   LI   ++      D  WL     P+     +    +S     Q C  G G+A
Sbjct: 174 QPDGEGLGLILM-NIAQAHYPDVQWLQQ-RYPLAR---TVFTSSSRTVQAQMCAKGLGVA 228

Query: 243 LLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +LP  ++ D+ + +R++ ED   P   ++  Y + ++   +L+A  + 
Sbjct: 229 VLP-RVLGDSVSGLRLLDEDEPPPGRDIWMGYHQDMRQMDRLRALADL 275


>gi|254239508|ref|ZP_04932830.1| hypothetical protein PA2G_00122 [Pseudomonas aeruginosa 2192]
 gi|126192886|gb|EAZ56949.1| hypothetical protein PA2G_00122 [Pseudomonas aeruginosa 2192]
          Length = 291

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 16/288 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA  LH+ Q+++ R+++ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDTRVFLALCREHTLRGAARALHVDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G        E+  K+E + +EL   +     + SG++R++TT  L  + +   L    L 
Sbjct: 61  GE----AAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLE 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +PDI++ L   +  +D+     D AIR  +P ++  LI RKL +  M  +A+  YL+   
Sbjct: 117 HPDIRVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNG 175

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P+  +    H+L+ +        E    L     PI + R+  + VNS + + Q    G
Sbjct: 176 VPVPGERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARG 230

Query: 239 SGIALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKA 285
            G+  LP Y+  +   LVRI  +      + V+    + L++T +++A
Sbjct: 231 LGLCELPLYM-GERDGLVRIWPQRERRRPYEVWMVTHKDLRHTARVRA 277


>gi|332995147|gb|AEF05202.1| transcriptional regulatory protein [Alteromonas sp. SN2]
          Length = 293

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 140/289 (48%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR+F  +AR+G  + AA  LHL  +++ R++  LET +   LF    +G  LT+ 
Sbjct: 1   MNWDDLRLFLGLARNGKISIAARNLHLDATTLIRRVKRLETALNCNLFELSNKGYLLTDH 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L          +   + +L +   + SG +R++ +   G  +L   L EF   YP I
Sbjct: 61  GKRLVNYIEHAERHILEAKNDLTDERQELSGTVRVSASEGFGSWVLAPALAEFKQRYPAI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+ ++  ++I+   AD AI L KP +   L  ++L    ++ Y     +     P S
Sbjct: 121 CVELVANSGFLNINKREADIAILLEKPTK-GLLYTKRLTDYRLNLYMHEDLVAAHGAPTS 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           I++L   NL+++  DLI     +F     ++  +  P +  L+  S  +  Q     +G+
Sbjct: 180 IEQLSPFNLVSYVPDLIYAPQLNF-----IEESLLSP-LHALKSTSINAQFQMLRNKAGV 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP +I K+   L  +++D I  + T +      +++  ++  F +++
Sbjct: 234 GILPHFIAKNAHELQPVLQDKINITRTFWLATHRDVRHLARVNVFLDWL 282


>gi|239834478|ref|ZP_04682806.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239822541|gb|EEQ94110.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 304

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 140/287 (48%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE G   
Sbjct: 6   RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+I + +
Sbjct: 66  YHRAVEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P   ++L
Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPERPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I   D   +   ++++  T    +  P    ++VNS ++     + G G ++LP 
Sbjct: 185 ADRPCII--DTNARSRNNWHFRNTDGSMMTVPVNGPIEVNSPVATKNAALAGLGFSMLPA 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +I ++      LV  +++ I     +Y  YP       K++A  +F+
Sbjct: 243 FIAEEEIERGRLVSCLDEFIVKDGGIYAVYPHRRYLPAKIRALVDFL 289


>gi|253990745|ref|YP_003042101.1| LysR family transcriptional regulator [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639076|emb|CAR67688.1| Transcriptional regulator, LysR family [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782195|emb|CAQ85359.1| Transcriptional regulator, LysR family [Photorhabdus asymbiotica]
          Length = 305

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 146/300 (48%), Gaps = 19/300 (6%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF ++   GS   A+E+L +S++ +SR ++ +E   G++L +R  R ++LT  G  +++
Sbjct: 9   QVFTIIVEQGSMIAASERLDMSRAMVSRYLAEMEKWAGVRLLHRTTRKISLTSAGEIVYQ 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            + ++    E   +     + + SG +RI+++  L  + L   + EF+ +YP I I + +
Sbjct: 69  HSRKLLQLSEEIPVHQPVEAQELSGLVRISSSQSLAMSALSVAIPEFMQIYPQIAIDMQM 128

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            NK I++  +  D A+R+   ++  +LI R L T H    AAP YL     P    +L  
Sbjct: 129 SNKAINLVEERIDLALRITNNLE-PNLIARPLSTCHSVVCAAPSYLTGKMIPQKPADLAL 187

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALL 244
           HN +T+ +   K +    WL   +R  GE    P    L  N  + +M+  + G+GIA+ 
Sbjct: 188 HNCMTY-NFFGKSL----WL--FERQ-GEKYSVPVSGILSANESVVLMEATLQGAGIAMQ 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298
           P Y V     +  L+ ++ +    +  +Y  Y         L+A  +F+   F  +  W+
Sbjct: 240 PYYSVASHLASGKLIHLLPEYQPQAMGIYGIYASRQNMPATLRALLDFLAKWFASSPYWQ 299


>gi|290509190|ref|ZP_06548561.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289778584|gb|EFD86581.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 305

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 123/251 (49%), Gaps = 15/251 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT +G+  
Sbjct: 6   SLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++  + EL  S  +P+GKLRI+  + +G  LL      F  LYP +++ L
Sbjct: 66  LTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPAFTAFTRLYPQVELDL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +++  +  D AIR    +  S LI RKL        A+P YL     P S  EL
Sbjct: 125 DFSDRLVNLIDEGFDVAIR-SGELADSRLIARKLGGFRFVLCASPAYLAEYGVPGSPAEL 183

Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             H  I F     G + P  + D        R  G+ R +  + VN+  + ++    G G
Sbjct: 184 AAHKCIFFRFPSTGLIQPWELRDM-------RLTGDFRATAVMTVNNIEAAIRLSAAGMG 236

Query: 241 IALLPDYIVKD 251
           IA +PD++V++
Sbjct: 237 IAYVPDFVVRE 247


>gi|209519868|ref|ZP_03268651.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499686|gb|EDZ99758.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 304

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 141/289 (48%), Gaps = 13/289 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  +G+F  A+E + +S   +SR I+ LE  + I+LF R  R ++LTE+G + +  
Sbjct: 14  VFAAVVDAGTFAAASEVIGMSPPGVSRAIARLEKRLKIRLFNRTTRSVSLTEEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE   +     +    GKLR+       + +L   L +F+  +PD++I+ +  
Sbjct: 74  VMPHLAGLEEAAVAAAGGASAVRGKLRVNLDPVCYRAILGPQLDQFIDAHPDLEIEFMAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187
           +   D+ ++  D A+R  +P ++S+LI RKL+   +   AAP Y+     P   ++L+  
Sbjct: 134 DHLGDLVLEGFDLALRFGEP-RTSTLIARKLLDTAVVTVAAPSYVARRGRPAKPEDLEGP 192

Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242
            H  + F +  P+  + F W       R +  PR   L VN   +++  C+ GSGIA   
Sbjct: 193 SHRCLEFRN--PETGKPFPWEFHRKRKRMVIAPR-GRLTVNDPGALLNACLAGSGIAQML 249

Query: 243 -LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  ++++ +   L+ +  D     + +Y CYP       K +AF +F+
Sbjct: 250 LLGAEHLIAEG-RLINLFPDWPDERYPLYACYPSRHHMPAKTRAFMDFV 297


>gi|172065152|ref|YP_001815864.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997394|gb|ACB68311.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 345

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 139/288 (48%), Gaps = 11/288 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V   G+F  A+E + ++   +SR I+ LE ++ I+LF R  R ++LTE+G + +  
Sbjct: 14  VFAAVVDMGTFAAASEVIGMTPPGVSRAIARLEKKLNIRLFNRTTRSVSLTEEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE        S+    GKLR+     + + +L   L  F+  +P+++I+LI  
Sbjct: 74  VMPHLAGLEEAAAAAAGSASAVRGKLRVNLDPVVYRTILGPQLDSFMDAHPELEIELIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187
           +   D+ MD  D A+R  +P ++S+LI RKL+   +   A+P Y+     P   ++L+  
Sbjct: 134 DSLGDLVMDGFDIAVRFGEP-RASTLIARKLLDTGIVTVASPAYIARWGRPTKPEDLESR 192

Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242
            H  I F +  P+  + F W       R + + R   L VN   +++  C+ GSGIA   
Sbjct: 193 SHRCIEFRN--PETGKPFAWEFHRRRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LL    +  N  L+ +  +     F +Y  YP       K +AF +F+
Sbjct: 250 LLGAEPLIANGQLINLFPEWADERFPLYAYYPSRHHLPAKTRAFLDFV 297


>gi|222081054|ref|YP_002540417.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725733|gb|ACM28822.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 300

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 139/300 (46%), Gaps = 18/300 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G F+ AA +L++S + ++  +  LE  +G++L  R  R ++LTE G   +
Sbjct: 7   LSVFGKVVEHGGFSAAARRLNMSVTMVATHVQSLEERLGVRLLNRTTRKVSLTETGKFYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +S++  +LE         +  P G L+I ++  + + LL   + E+L LYP + + + 
Sbjct: 67  DRSSQILAELEEADRAAGALTTTPRGTLKIYSSAAIVRFLLP-VIDEYLQLYPSVSMDVD 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  + ID+  D  D  IR   P   SSL+ RKL +       +P YL+   EP +  EL 
Sbjct: 126 IGERTIDMIEDGHDLVIRT-VPSPDSSLMVRKLTSWRHVLVCSPSYLEEHAEPKTPAELA 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243
            HN + +    P   E   W    D   GEP    +Q     NS  ++    V G  + L
Sbjct: 185 AHNCLQYS-YYPYGDE---WHFEADN--GEPASVRVQGNARSNSAETLRHLAVNGRAVWL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
            P +IV ++     L+R+M +     FT+   YP       K++ F + +   F + R W
Sbjct: 239 APSFIVSEDLAEGRLIRMMPEFRGVEFTINAIYPNRSHLPTKVRLFIDLLVERFAEHRKW 298


>gi|323525605|ref|YP_004227758.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382607|gb|ADX54698.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 314

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 140/312 (44%), Gaps = 26/312 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVSVIDSGSITAAAEKLGQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGEGFLQRARAILDAMEEAEESVARKRRRPSGRLRVDAASPFMLHCIAPHMTAFSELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  + + +D+     D AIR+   +Q S+L  R L +  +   A+P YL    EP
Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRI-GALQDSTLHARALGSSRLRVVASPAYLAAHGEP 179

Query: 181 LSIQELDKHNLITFG-----------DLIPKCMEDFNWLATVDRPIGEPRI----SCLQV 225
            ++  L +H LI F            +   +       L    R  G+P        +  
Sbjct: 180 KAVDALRQHRLIGFTAPEHLNRWPLRERGARSSASSGRLGRDGRDGGKPEPLKIEPSITA 239

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALK 278
           +S  ++ Q  + G GIA L D+++  +       P L   + D   P   VY+   ++  
Sbjct: 240 SSGETLRQLALSGWGIACLADFMIAADIRDGRLVPILGHALFDERQPVAAVYY---QSAS 296

Query: 279 NTGKLKAFRNFI 290
             G+++ F +FI
Sbjct: 297 LAGRVQCFLDFI 308


>gi|172060688|ref|YP_001808340.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993205|gb|ACB64124.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 310

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 3/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R + LT+ G +  
Sbjct: 13  IELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   + E       P+G LRI+     G   +   L  F   YPD++++  
Sbjct: 73  EQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAFRERYPDVRVETH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID + +  D AIR R P   SSL+ RKL    +   A P YLK    P ++ +L 
Sbjct: 133 LSNRNIDFAEEGFDLAIRGRAP-ADSSLVARKLEDAELVVVATPGYLKRAGVPRAVDDLH 191

Query: 188 KHNLITFGDLIPKCMEDFNWL 208
            H  I F   +P       WL
Sbjct: 192 AHECIQFE--LPSSGRPIPWL 210


>gi|78060381|ref|YP_366956.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964931|gb|ABB06312.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 321

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 138/292 (47%), Gaps = 14/292 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA   SFT AA ++ +S++++S+ +  LE  + +KL YR  R ++LTE+G +L+ V 
Sbjct: 12  FAHVAHHRSFTKAAAEMGVSRANLSQNVKALERRLNVKLLYRTTRDMSLTEEGQRLYDVW 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 +E T   L E+   P+G +R+ T+    + L++ +L+EF   +P + ++L++D+
Sbjct: 72  YPALVAVERTVDALHEARDAPTGLIRMNTSRVAAKTLIEPHLEEFSTRFPGLGLELVMDD 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              +I  D  D  IR+ + +    +      ++ M     P Y K   EP +  +L +HN
Sbjct: 132 GLANIVADGCDVGIRIGESLAPHMVAVPITPSLEMAVVGTPAYFKRHGEPATPADLVRHN 191

Query: 191 LITF----GDLIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            + F    G + P      D +       P+G      +  N    +++  + G G+   
Sbjct: 192 CLRFRQVSGAIHPWEFASPDASGHGFTVEPLG-----SITTNDDDGMIRAALQGVGLIQH 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            D  V+   D+  LVR+++    P    Y   P   +   K++A  +F+  K
Sbjct: 247 IDIAVQPHLDSGALVRVLQPWCKPFAGFYVYAPTRAQMPMKIRALIDFLVEK 298


>gi|154245010|ref|YP_001415968.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159095|gb|ABS66311.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 301

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 143/288 (49%), Gaps = 10/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +GSF+ AA  + ++ S++S+ I+ LE  +G++L  R  R L LT +G   
Sbjct: 7   EMMVFVRVVEAGSFSEAARLMLMTPSTVSKLIARLEARLGVRLIERSTRRLALTGEGQFY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +  +L+ T+ ++ +   +  G +R+ +++  G   L+  L  F   YP + + L
Sbjct: 67  YERSQALLGQLDETEQQIAQGGAEAEGVVRVTSSVSFGSAALEPVLPAFFEAYPKVIVDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+ +D  D AIR+ K +  S+L+ RK+        A+P YL     P + ++L
Sbjct: 127 SLSDEVVDLYLDRTDVAIRVGKLVD-SNLMARKIGETRRRIVASPAYLARHGTPATPEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
             HN + F     + M    W       I E  +S  L VN+  ++ +  + G GI  L 
Sbjct: 186 VHHNCLGFN--FRRAMP--VWPMREGGRIVERMLSGSLLVNNGDTLRRMAIAGVGIIRLA 241

Query: 246 DYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           DY +++      LV ++ D  I  +  V+  +  A     +++AF +F
Sbjct: 242 DYHLREPIARGELVELLADTDIGVTDDVHALFRGAQFLPARVRAFLDF 289


>gi|261252111|ref|ZP_05944684.1| transcriptional regulator LysR family protein [Vibrio orientalis
           CIP 102891]
 gi|260935502|gb|EEX91491.1| transcriptional regulator LysR family protein [Vibrio orientalis
           CIP 102891]
          Length = 297

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 22/295 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++  +F  VA+  SF+ AAE L +S+S +S QI+ LE E+   L  R  R + LT  G 
Sbjct: 8   FERYALFSEVAKQLSFSKAAESLGISRSYLSSQINQLEHELATSLLIRSTRSVRLTAAGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           K+      +   +   + EL  +  + SG LRI          L     +F  L+PDI+ 
Sbjct: 68  KILAKMHGINASILELEKELDHTKSEVSGLLRITAPTIFSHRFLVDICHQFQQLHPDIEF 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +     D++  + D AIR        +++ +KL+       A+P YL     PL+  
Sbjct: 128 DLDIGYNRQDLANSHFDLAIRATN-TPPDNMVAKKLMPYQHICCASPDYLIRKGTPLTPS 186

Query: 185 ELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           +L +HN          CM D N   W     +     +IS    + ++    ++     G
Sbjct: 187 DLIEHN----------CMSDPNLRQW--QFSKQGNSEQISTHGDMLISDNQLLLAAAEKG 234

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  +P Y+V+   DN +LV++++D +     +Y  YP  L+++ KL AF +F+
Sbjct: 235 KGIIKMPCYLVQPALDNGSLVQLLQDYVIAESAIYLIYPPQLRSSAKLSAFTDFM 289


>gi|188590953|ref|YP_001795553.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|170937847|emb|CAP62831.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 304

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 130/302 (43%), Gaps = 18/302 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  V   GSF+ AA+ L ++ S++SR +S LE  +G  L  R  R   LTE G  
Sbjct: 7   NAMAVFARVVECGSFSAAAQDLGMTPSAVSRHVSRLEGRLGASLLQRTTRAFALTELGQS 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + +            E    P G LR++  +  GQ  L   L   L  YP + +Q
Sbjct: 67  VYAACARMTAAAREVTALAGEHGGAPHGVLRVSAPVSFGQAWLAPRLPPLLAKYPGLDLQ 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D A+R+ + + +  L  R L  +     A+P YL     P +  +
Sbjct: 127 LTLADRMVDLVEEGLDVAVRIAREL-APGLAARPLREVRYRLVASPAYLARHGAPATPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSG 240
           L     +  G        +F    T+    G  ++       L +N+ L+IM      +G
Sbjct: 186 LPAARCLYLG------YGNFGERWTLRHHAGGDKVEVRIPPRLTLNNSLAIMSMVERDAG 239

Query: 241 IALLPDYIVKDNPNLVRIME-----DVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I L+PD+ + D     R++      D++ P   T Y  Y        K++AF + +   A
Sbjct: 240 IGLVPDFSLGDALERGRVVTVLGDWDILEPYIGTAYAVYTPTRHVPPKVRAFVDHLAASA 299

Query: 295 RD 296
            D
Sbjct: 300 GD 301


>gi|319780389|ref|YP_004139865.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166277|gb|ADV09815.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 297

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D ++L  F  VA   SFT AA +L ++QS++S +I  LE ++GI+L  R  R +  T  G
Sbjct: 5   DLNQLTWFQAVAEERSFTKAAAKLGVAQSTLSHRIKQLEAQMGIRLLTRTTRNVATTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    ++E     L     KPSG +R+  +    ++++   LK  L  YPDI 
Sbjct: 65  ERLLQTIAPRIGEIEDEIAALMAFREKPSGSIRLTLSDHALESVVWPKLKPILSAYPDIG 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LILD+   +I  +  D  +RL + ++   +  R      + A A+P Y      P   
Sbjct: 125 VELILDSTFRNIVEEGFDAGVRLGESVEKDMIAVRIGPDWRLVAVASPDYFAARGVPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L +H  I         +  + W    D      R++  L  N+  +++   V G GIA
Sbjct: 185 QDLIRHVCINMRHETAGGL--YAWEFEKDGQALRVRVNGQLTFNNSYAMIDAAVHGYGIA 242

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFR 287
            +P+ IV+ +     LV++++D  +P F  YF  YP   +N   L AF+
Sbjct: 243 YVPENIVEQHIASGLLVQVLDD-WSPFFDGYFLYYPSRRQN---LPAFK 287


>gi|115358490|ref|YP_775628.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283778|gb|ABI89294.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 315

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 128/295 (43%), Gaps = 18/295 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G   
Sbjct: 6   NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD+ I+L
Sbjct: 66  LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHTQYPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P   Q+L
Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPEYVKRHGAPARPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  +T   L         W+      + +  ++  +Q N+  S+      G GI +LP
Sbjct: 186 GAHACLT---LCTPAFPTHEWVLEGAEGVEQIHVAGPVQTNTAESLALAIRDGIGIGMLP 242

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            Y   D   +  LVR++ D I     VY  YP            R F+  K R W
Sbjct: 243 LYSAIDALRDGTLVRVLPDHILQKMNVYALYPS-----------RRFVDAKVRTW 286


>gi|330816957|ref|YP_004360662.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327369350|gb|AEA60706.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 299

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 135/302 (44%), Gaps = 25/302 (8%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL     F  V  + SF+ AAE L L +SS++  +  LE  +G  L  R  R L+LTE 
Sbjct: 2   DKLHAMTTFVRVVEARSFSKAAETLSLPRSSVTTTVKQLEAYLGTPLLRRSTRSLSLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + +  L   +  P G++R+     +G+  +   L  F   YP+I
Sbjct: 62  GERYLASCRAILGEIASAERALLSEAHAPRGRVRVDLPGVIGRACVLPRLAAFEARYPEI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++  D+  +  DC IR  + +  SSL+ R+L  +     A+P YL+   EP S
Sbjct: 122 ELVLGLSDRPADLIHEGIDCVIRTGE-LADSSLVARRLGELAWITCASPRYLERHGEPAS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYCVLG 238
           I  L +H ++ +  L        +W   VD   GE R   L     VN   + +Q  + G
Sbjct: 181 IDALGEHRIVNY--LSNATGRPLDWRFRVD---GEARAMTLPSRYAVNETEAYLQCALEG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+  +  +       +  L  ++ D+   S  V   YP+A  N     A R FI     
Sbjct: 236 LGLIQISAFAAAAYLRSGRLREVLADLRCASVPVSIVYPQARVNA----AVRTFI----- 286

Query: 296 DW 297
           DW
Sbjct: 287 DW 288


>gi|207722333|ref|YP_002252769.1| hypothetical protein RSMK04930 [Ralstonia solanacearum MolK2]
 gi|206587510|emb|CAQ18092.1| hypothetical protein RSMK04930 [Ralstonia solanacearum MolK2]
          Length = 301

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 14/252 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   +F  AA  L +S S++S  +  LE  +G++L  R  R ++LTE G +L
Sbjct: 8   ELTAFIAIAEQRTFRAAAGMLGVSPSALSHAMRNLEARLGVRLLNRTTRSVSLTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R        LE    E+     +PSG +RI+ +    + +++  L +FL  YPDI ++ 
Sbjct: 68  LRRVRPAVADLEDAVNEVASERNRPSGSIRISASESAARPIVRHVLPDFLAAYPDIHVEC 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D + +DI  D  D  IRL + +    +  R    +   A A+P YL N   P +  +L
Sbjct: 128 VVDTRLVDIVADGFDAGIRLLEDVPRDMIAVRFGPDMRFAAVASPAYLSNHAPPQAPHDL 187

Query: 187 DKHNLITF----GDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +H  I F    G L    +E     A   VD P        L + +    ++  + G G
Sbjct: 188 AQHRCIRFRFESGALYRWDLEHRGKAAHVNVDGP--------LTLGNLNLAVEAALAGIG 239

Query: 241 IALLPDYIVKDN 252
           IA +P+ +V ++
Sbjct: 240 IAWVPENLVAEH 251


>gi|295680999|ref|YP_003609573.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440894|gb|ADG20062.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 309

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 128/287 (44%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA + SF  AA QL ++ S I+ +I  LE  V   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVAETSSFAEAARQLGVTSSVITTRIQQLEKFVNAPLFHRSTRVVRLSEVGEAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +EV  ++     +++E    P+G+LRI              L EF   YP IQ+ +I
Sbjct: 67  RECAEVVGRVNELTDQMRELRATPTGRLRIQMLPGFALGHFGAPLAEFNRRYPGIQLDVI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D   +  D A ++  PI + SLI+R+L  +     A P Y+K    P   ++L 
Sbjct: 127 VNDRVVDPIEEGFDVAFQIFPPI-AESLIERRLFKVRRLFCATPAYVKEHGAPQHPRDLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H    +     +      W  T    + E  +   ++ NS   +  Y + G G+  LP 
Sbjct: 186 QHTTALYSGYPSRN----RWTMTHGDEVVEMELPGMIRSNSVHLLRDYALTGGGVVCLPT 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +      + +LV I+ D           YP   +   K+KA   F+
Sbjct: 242 LVASAALLDGSLVPILTDYTLSPLNFAAVYPATQRQALKVKALVEFL 288


>gi|220922492|ref|YP_002497794.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219947099|gb|ACL57491.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 295

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 130/290 (44%), Gaps = 11/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD L+ F  VAR G    A  +L L+ ++++R++  LE  +G  LF+R   G +LTE 
Sbjct: 1   MNWDHLQTFLAVARHGQMLEAGRKLGLNHATVARRLECLEAALGTALFHRRPNGSSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L  V   +   + +    ++    +PSG +RI     LG   L   L      +  +
Sbjct: 61  GERLLPVAERIEADVLSVTARMRAEEAEPSGTVRIGAPDGLGNLFLARELGALSCQHAKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+   +   +S   AD AI L +P+    LI  KL    +  YA+  YL+    P +
Sbjct: 121 VIELVPLPRSFSLSKREADLAIGLDRPVD-GRLILSKLTDYSLSLYASRRYLEQSGMPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            +EL  H  +         ++D+ + + +D     + R     +    +  ++    G G
Sbjct: 180 TRELAGHAAVI-------GVDDYAYASALDYSAFLQSRCRRAFRCAGAIGQLEAVKAGVG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +L D+   D  +LVR++ +           +P++     ++ A R+FI
Sbjct: 233 IGILHDFAAADCADLVRVLPETRFQRSYWLMSHPDS-HEARRIVACRDFI 281


>gi|148554102|ref|YP_001261684.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148499292|gb|ABQ67546.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 326

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 128/274 (46%), Gaps = 12/274 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD L     +A +GSF  AA +L +S S ISR +  LE  +  +LF R  R + LTE G 
Sbjct: 4   WDGLEEIVAIADTGSFVGAARRLRVSASQISRAVQRLEHRLRAELFIRTTRSVQLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +  + +   ++L     +  G++R+  +  LG+  +   ++ F+  +P + +
Sbjct: 64  TLVEQCRRIIDERDEA-LQLARGQGEMQGEVRLTCSTALGERFVAPIVRRFIETHPRLSV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+ +D+  +  D AIR   P     L  R++ +      A+P YL     P  + 
Sbjct: 123 RLELTNRLVDLVSEGFDVAIRTGHPT-DHRLAARQIASRPAEVCASPAYLARAGHPRGLA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+H  +    +    +ED    + V  P G  R  C   NS  +++   + G GI  L
Sbjct: 182 DLDRHECLIGTSVNWHFLEDGQRRSFV--PSG--RWRC---NSGNAVVDAALAGMGICQL 234

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           P + V+D+     LV ++ED       V+  YP+
Sbjct: 235 PSFYVRDHIAAGRLVALLEDYRDRPEPVWAVYPQ 268


>gi|94309688|ref|YP_582898.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353540|gb|ABF07629.1| transcriptional regulator, LysR-family [Cupriavidus metallidurans
           CH34]
          Length = 310

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 126/296 (42%), Gaps = 17/296 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD   + VF   A  G+ + AA  L LS S+ S ++  LE  +G +L +R  R L+LT
Sbjct: 1   MPFDLTDIAVFVRAAALGNLSAAARDLGLSTSTASARLQRLEDRLGTRLLHRTTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +       +    E     +   +  P G LR+      G+  +   +  FL  YP
Sbjct: 61  GDGERFLTHAEPLLAASEVAAQSVGRGAEVPHGPLRVTAPASFGRQHVSPAIPAFLATYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + L L ++ + +     D A+R+   +  SSL+ R L   H    A+P YL     P
Sbjct: 121 GITLDLRLSDQIVGLVDSGIDVALRMGA-LPDSSLVARPLAPSHRVICASPEYLARHGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
              ++L  HN +  GD          W    D P+GE  +S    L+ ++   I    V 
Sbjct: 180 RHPEDLRNHNCLVLGD-------QSTW--RFDTPVGESAVSVRGTLRADNGEVIRDAIVA 230

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G GIAL   + V        LV ++++  + P  +++  YP       K  AF +F
Sbjct: 231 GVGIALKSTWDVAPYLRRGELVTVLDEYPVLPVVSIWAVYPSRHLVPAKTHAFVDF 286


>gi|299137605|ref|ZP_07030786.1| transcriptional regulator, LysR family [Acidobacterium sp.
           MP5ACTX8]
 gi|298600246|gb|EFI56403.1| transcriptional regulator, LysR family [Acidobacterium sp.
           MP5ACTX8]
          Length = 306

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 7/281 (2%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V  SGSF  AA  L ++QS++SR I+ LE  +GI+LF+R  R + LT +G + +   + +
Sbjct: 17  VVESGSFVRAANTLGVTQSAVSRAIAKLEVRIGIRLFHRTTRTVKLTAEGKQFYEEIAPL 76

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              ++        +     G LR+       + L+   + +FL  YP++ ++L+  +   
Sbjct: 77  LDGIKNAVTLASGTGASVKGHLRVNIDPLFSRLLIAPQIGKFLDRYPELSLELVTRSLLG 136

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+  +  D  IR   P   SSL+ RKL+   +   AAP Y+     P    +L  HN + 
Sbjct: 137 DLVSEGFDVGIRFGDP-APSSLVIRKLLDTRILTVAAPGYINKFGRPSKPTDLSHHNCLQ 195

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD- 251
           F +      + + W     R +   +  S L +    +++  C+ G GIA + +  ++  
Sbjct: 196 FRN--SATGQPYEWEFRRGRKVVPVKTDSRLMLTDAGTLLATCLAGVGIAQVMNLEIQPL 253

Query: 252 --NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +  L+ +  D    +F +Y  YP       KL+ F +F+
Sbjct: 254 LHSGKLIDLFPDWPDETFPLYMLYPSRTLPPAKLRVFIDFV 294


>gi|254295504|ref|YP_003061526.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
 gi|254044035|gb|ACT60829.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 294

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 137/284 (48%), Gaps = 12/284 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R+F  V   GS + AA +L LSQ ++ +++  LE  +G  LF R   GLT T +  
Sbjct: 7   WDDQRIFLAVLEEGSLSAAARKLGLSQPTVRKRLEILEHALGCVLFTRSVNGLTPTPKAR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            LH    ++      + + +++S+VK    SG++R++    +G  ++   L     ++P 
Sbjct: 67  NLHDAAKKMA---LASDLFVRQSTVKKGEISGRVRLSVPDFMGIEVVPNFLTSLNEVHPA 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI+L L NK  ++     D AIR   P Q  +LI ++L  I +  +A+  YL     P 
Sbjct: 124 IQIELELSNKPANLLDQEVDIAIRTIAPHQ-DALIAKQLPPIQLGFFASKKYLAKRDIPQ 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ + + HNLI       +   D     ++     +  I  L+ +++ + +     G GI
Sbjct: 183 NLSDFEMHNLIGPD----RNRTDIAIAQSISPHFSDANI-VLKCDNHPAHLSAARAGLGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           A+        +PNLVRI+ D I    +V+    E  K+  +++A
Sbjct: 238 AVAQIPAGNKDPNLVRILPDFIVADMSVWVVTHENFKHDPRIRA 281


>gi|206562206|ref|YP_002232969.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038246|emb|CAR54200.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 305

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 135/290 (46%), Gaps = 14/290 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF     + SF  AAE+LH+++S++ + I+ LE  +G+ LF+R  R  +LT++GS  +  
Sbjct: 10  VFVAAVEASSFAQAAEKLHITRSAVGKSIARLEERLGVVLFHRTTRSQSLTDEGSLFYEH 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 +++  +  L+    +  G+LR++     G   +   L      +PD+ ++L   
Sbjct: 70  CLRAMDEIQAGEALLETGKWQMKGRLRVSMPTLFGHLCVAPILIGVAKAHPDLDLELSFS 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D++ +  D A+R+     SS L+ R L    M   A+P YL    EP + +EL++H
Sbjct: 130 DRSVDLAEERFDLAVRIGTLPNSSGLVARALAEHRMAFCASPAYLSRYGEPQTWRELEQH 189

Query: 190 NLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             + +     +  +   W   VD  R   +P +  L  +   ++M   +   G+A LP +
Sbjct: 190 KALAY----TRFGQVHRWPVLVDGERVELQPAVRLLS-DDLRALMDAALADLGVAWLPYW 244

Query: 248 IVKDN------PNLVRIMEDVITPSFTVYFCYPE-ALKNTGKLKAFRNFI 290
           +V+D         L+     V+ P   V+   P   LK    + A R  +
Sbjct: 245 LVRDALRGGALRELLPAQPGVVYPIHAVWPATPHLPLKVRAAVDALREHL 294


>gi|148360190|ref|YP_001251397.1| LysR family transporter transcriptional regulator [Legionella
           pneumophila str. Corby]
 gi|296107987|ref|YP_003619688.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy]
 gi|148281963|gb|ABQ56051.1| transcriptional regulator, LysR family [Legionella pneumophila str.
           Corby]
 gi|295649889|gb|ADG25736.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy]
          Length = 301

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 140/295 (47%), Gaps = 13/295 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + + L +F +V +  SFT AA +  +S++ +S++IS LE ++ IKL  R  R L+LT 
Sbjct: 5   SLNLNDLAIFALVVKKRSFTQAALEAGISKAWVSQKISQLEGKLDIKLLNRTTRSLSLTL 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +  ++   +  L+E +  PSGKL I      G +L    L +F LLYP 
Sbjct: 65  GGEILFEHCQAMLKEVIHAENHLREYAKAPSGKLVITCPEISGLDLFPALLHQFKLLYPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+LI+ ++ +D++    D A R  K +  S L+ R +  +     A+P YL N     
Sbjct: 125 IKIRLIITDQFVDLTQQGIDFAFRTGK-LTDSGLVSRYIGAVPRCLVASPEYLSNNSPIK 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVLGS 239
           S  +L  H L+    L        +WL   +    +  +    ++ NS + + +   L  
Sbjct: 184 SPADLFNHQLLKHSSLP-------DWLLKKEEEAFKIHVKNPVIESNSLIFLHKMSCLHH 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GIA LP Y+  D   +  LV+++ D +      Y  Y +        + F++FI 
Sbjct: 237 GIAFLPYYLCSDALKHKTLVKVLPDWLNVDNEYYMVYHKEKSVLYIHQLFKDFIL 291


>gi|308051406|ref|YP_003914972.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307633596|gb|ADN77898.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 314

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 9/247 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+ A  +L L +  +S QIS LE  + ++L  R  R L++T +G  L
Sbjct: 10  RLAIFATVVEQGSFSAAGRKLGLGRGKVSEQISALEQALSVRLLQRSTRQLSVTAEGQVL 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R   ++  +      E+Q+   +P G+LR+ TT D+ Q +L   L  F   YP IQ+ L
Sbjct: 70  YRHCRDLLPQASQGLREVQDLGPEPMGRLRLTTTSDVAQQVLSPFLSRFCQQYPGIQLDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +++  +  D AIR+  P+  SS++  +L  + M  YAA  YL     P S+ +L
Sbjct: 130 QLADAVLNLVEEDIDIAIRIGTPV-DSSMVGIELGALPMGLYAATSYLAQWGVPESLPDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISCLQVNSYLSIMQYCVLGSGIAL 243
             H  +    +        +    V +P G P   R      N+ L        G GI L
Sbjct: 189 SAHRGVQMTRMPNLSTLMLSNDEGVSQPAGLPVFHRTDTPAGNATL-----VEQGLGIGL 243

Query: 244 LPDYIVK 250
           LP + + 
Sbjct: 244 LPHFTLN 250


>gi|238895073|ref|YP_002919808.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547390|dbj|BAH63741.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 305

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT +G+  
Sbjct: 6   SLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++  + EL  S  +P+GKLRI+  + +G  LL   L  F  LYP +++ L
Sbjct: 66  LTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFSRLYPQVELDL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +++  +  D AIR    +  S LI R L        A+P YL     P S  EL
Sbjct: 125 DFSDRLVNLIDEGVDVAIR-SGELADSRLIARTLGGFRFVLCASPAYLAEYSAPGSPAEL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  I F    P       W     R  G+ R +  + VN+  + ++    G GIA +P
Sbjct: 184 AAHKCIFF--RFPATGLIQPWELRGMRLTGDFRAAAVMTVNNIEAAIRLSAAGMGIAYVP 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D++++   D   L  ++             +P +   + +++ F +FI
Sbjct: 242 DFVLREAMDEGQLQEVLPGCCVKDGHFSVLWPASRYLSPRIRCFIDFI 289


>gi|332524392|ref|ZP_08400607.1| LysR family regulatory helix-turn-helix protein 18 [Rubrivivax
           benzoatilyticus JA2]
 gi|332107716|gb|EGJ08940.1| LysR family regulatory helix-turn-helix protein 18 [Rubrivivax
           benzoatilyticus JA2]
          Length = 303

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 102/190 (53%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R +  V  SGSFT AA+QL L ++S+S+Q+  LE ++G++L  R  R +T T +G 
Sbjct: 4   FEAMRAYVQVVDSGSFTRAAQQLGLHKASVSQQVQQLEAKLGVRLLTRTTRKVTPTTEGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + H     +  +L+  +  L++ S    G+LR+   + +G+ L    ++ FL  +P I +
Sbjct: 64  RFHERARSILQQLDEAETTLRQGSRALQGQLRVDVPVAVGRLLFAQEIRGFLDSHPGIDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +D+     DCA+R  + +  S L+ R +  +     AAP +L+    P + Q
Sbjct: 124 ELGCTDRRVDLVAAGVDCALRGGE-LPDSGLVARPVGALRFVLCAAPRHLERHGVPATPQ 182

Query: 185 ELDKHNLITF 194
            L  H  + F
Sbjct: 183 ALAAHPQVGF 192


>gi|237811263|ref|YP_002895714.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|237504524|gb|ACQ96842.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 327

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 129/293 (44%), Gaps = 13/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W +   F  V   GS + AAE L +S  S SR ++ LE  +  +L  R  R L++TE G 
Sbjct: 4   WAEYEFFVRVVEMGSLSKAAEALSISTPSASRLLATLEKRLDARLIERSTRRLSVTEVGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V  ++   +    ++S  PSG LR+  ++ L    +   L +F   YP++Q+
Sbjct: 64  TFYARCKTVLDEMNEAEEAAAQTSRSPSGVLRVTASLSLMLQHVATLLPDFTQRYPNVQV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N+  DI+ +  D AIR R+    S+LI R+L T      A+P Y++    P   Q
Sbjct: 124 ELVAANRYYDITDNDIDVAIRTREDEPDSTLIIRRLATTRRVLAASPAYIQRHGMPAVPQ 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            L KH  + +    P+ +       T  R    I  P    L  N    +    + G GI
Sbjct: 184 ALPKHKFLGYSYHNPREL-------TFQRDGESISIPLTPLLDANDGQIVRVAALDGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              P Y++ D+     L+ ++ D   P  ++   Y        K + F +FI 
Sbjct: 237 LAQPMYVIYDDVMAGRLIPLLLDWELPRLSINLVYRRRALIPAKTRVFLDFIL 289


>gi|150397932|ref|YP_001328399.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029447|gb|ABR61564.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 303

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 141/304 (46%), Gaps = 30/304 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF      G F+ AA    ++ S++S+ +  LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEVFAKAVELGGFSAAARHYRMTPSAVSKLVLRLEERLGVRLVNRSTRRLQLTPEGHAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H  T  +   ++  +     +   P+G++R+      G ++L   + EF   +P + + +
Sbjct: 71  HERTVRILADIDEAE-RSASAGESPTGRVRLNVNASFGTHVLMRLVPEFRASFPAVSLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +  +D+     D AIR   P++SS+LI RKL    M    AP Y++    P S+++L
Sbjct: 130 VMTDAVVDLMEARTDVAIRA-GPLKSSTLIARKLGATRMMIVGAPSYVERYGMPSSLEDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD----RPIGE----PRISCLQVNSYLSIMQYCVLG 238
             H  + F      C     +   VD    R  GE    P    +QV+    + Q  + G
Sbjct: 189 AGHERLGF------C-----YARAVDGWPIRAEGETIVLPASGAVQVSDGEGLRQLALAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +G+A L ++ V+++     LV ++ED+    +     VY     AL    +++A  +F+ 
Sbjct: 238 AGLARLAEFTVREDVRAGRLVPVLEDLNPGDLEEVHAVYLGQGGALP--ARVRAVLDFLA 295

Query: 292 LKAR 295
             AR
Sbjct: 296 RHAR 299


>gi|319795549|ref|YP_004157189.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598012|gb|ADU39078.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 304

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 125/277 (45%), Gaps = 10/277 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++ +F  VARSGSF  AA +L +  +++SR+I  LE  +G +L  R  R LTLT  
Sbjct: 2   LDLNEVAMFVQVARSGSFAEAARRLSVPSATVSRRIQQLEARLGTRLMQRSTRKLTLTSA 61

Query: 63  GSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G   H R    V   +E  Q+ + ++S +PSG +R+              +  FL  +P 
Sbjct: 62  GESFHERCGPAVEELIEAGQLHVADNS-EPSGTVRVTAPTSFFDFFQMEWVDTFLAEHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++  +L +  +D+  D  D A R   P+Q S  + R++   +    A+P YL     P+
Sbjct: 121 VRLDFVLSDLLVDLIADRIDIAFR-GGPLQDSCYVARRIFASYGELTASPAYLAAHGVPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+++L +H  +   D     +        V++ +   R+      N+   + Q    G G
Sbjct: 180 SLEDLGEHECVVQPDASGNAIWRLQDAEGVEKDV---RVKGRFNSNTQSVLRQAACAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           IA LP  +         LVR++         +   YP
Sbjct: 237 IAALPSILTAPEIAAGRLVRVLPGYTRAGRGLSVVYP 273


>gi|283788428|ref|YP_003368293.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282951882|emb|CBG91598.1| putative LysR-family transcriptional regulator [Citrobacter
           rodentium ICC168]
          Length = 299

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 134/287 (46%), Gaps = 14/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA +GSFT AA++  L +SS+S++IS LE +VGI+L  R  R L LT  G    
Sbjct: 8   MALFALVAENGSFTAAAQKAGLPKSSVSQRISQLEQQVGIRLINRTTRKLNLTYAGEHYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E  +  LQ     PSG+LRI +   +G  LL      F   YPD+ +++ 
Sbjct: 68  VHCREILAASERAEYALQRLRDNPSGRLRITSPAGIGATLLARLNARFQQRYPDVNLEVS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+     D A+R  +P Q S+LI R +     +  A+P YL         ++L 
Sbjct: 128 ISDEMLDLVDSGFDVALRTGRP-QDSTLIGRMIGHCPRYLLASPDYLSRYAPLRHPRQLP 186

Query: 188 KHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H  IT            D ++    DR            ++ +   +  + G+GI LLP
Sbjct: 187 EHQCITHKAWTEWVFHRGDEDYQHVPDR--------VHLTDNLVYARESAIAGAGITLLP 238

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            ++++D      L +++ +       ++  YP    N+  L ++  F
Sbjct: 239 AFMLEDRVEKGELTQVLAEWTVAGNDLWLVYPSRKLNSPALMSYIEF 285


>gi|152984691|ref|YP_001347687.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959849|gb|ABR81874.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 315

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 131/289 (45%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSFT AA  L  S +++SRQ++GLE  +  +L  R+ R + +TE G + +
Sbjct: 7   IRTFVRVVEHGSFTQAARLLGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTETGLRYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +     ++++S   PSG+LR+    +LG   L   L ++L  YP++ + L 
Sbjct: 67  EHCKQILRTVAAAAADVEDSQSHPSGRLRVHAATELGLGHLMPLLADYLDRYPEVCVDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L      +  +  D  + L + +  SSL+ R+L  +   A AAP YL+    P S  EL 
Sbjct: 127 LTQDSPALLDEGLDMLVVLGRALPDSSLVARELGHVFSVACAAPAYLERHGAPRSPWELR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
            H  +     I        W    D    E R+     L+VN   +       G G+ LL
Sbjct: 187 HHRCLQ----IAGASGAQAWSFVHDG--AEARVEVRDVLKVNLPEAACLAASAGLGVCLL 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++      +  L+R++ D       V+  YP       K++ + +F+
Sbjct: 241 PGFVAARALQDGRLLRVLPDYRLLPREVFALYPSRRYLDAKIRTWIDFL 289


>gi|134293960|ref|YP_001117696.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137117|gb|ABO58231.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 299

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 135/292 (46%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +F  AA++L ++Q ++++Q+  LE  V ++LF R  RGL LT  G +
Sbjct: 14  NALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDAVEVQLFRRLPRGLALTRDGLE 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      +    + L +   +P+  L ++TT       L   L +F   +PDI+++
Sbjct: 74  YFSSVQRALQLIADATLALGQ---RPAA-LTVSTTPSFASKWLIPRLADFGRQHPDIEVR 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ D +      D  D AIRL KP   + L  + L  + + A A+P  L       SI +
Sbjct: 130 VVADERLASFRADGVDIAIRLGKPPFPAGLTAQLLSPLDVFAVASPTLLDGAPPIRSIDD 189

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    DL P+ ++       VD   G PR S     S L+I    + G GIAL 
Sbjct: 190 LSTHVLLHDAHDLWPEFVDKLGGRGRVDATKG-PRFS----QSLLAI-DAAIAGQGIALT 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + +V+ +     L R+ +     S   Y  +P A   +  L+A R ++F +
Sbjct: 244 SEPLVERDIAEGRLRRVFDFSFPMSLGFYVVFPNANVQSDTLEAMRRWLFAQ 295


>gi|325293834|ref|YP_004279698.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325061687|gb|ADY65378.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 299

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 145/292 (49%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G+F+ AA  L++ +++++  +  LE  +   L  R  R + LT  G+  +
Sbjct: 7   MRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHLHTTLLNRTTRRVMLTTDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S++  ++E     +  + V+PSG+LR+         ++  +L EF   YP I++ L 
Sbjct: 67  ERASQILSEIEELDGSMSSAQVQPSGRLRVEMAGVFADLVVIPHLCEFYQRYPQIRLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D   +  DCA+R+   ++  SLI RK+  +    +A+P Y+++   P   ++L+
Sbjct: 127 VGDRLVDYIAENVDCALRV-GTLRDQSLIARKVGELKFETFASPLYIESFGMPQQPEDLE 185

Query: 188 K-HNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             H+ +     T G ++P   +  N L +V+     P    + VN   + +   + G G+
Sbjct: 186 NGHHSVGYFNATTGQIMPISFD--NGLRSVEI---TPNY-VVSVNDSRTYLNAALAGMGM 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++VKD      LV ++ +       +Y  YP+    T K++ F +++
Sbjct: 240 VQLPVFMVKDALARGELVPVLPEWRREPMPIYVVYPQTRHVTNKVRVFVDWL 291


>gi|194364608|ref|YP_002027218.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347412|gb|ACF50535.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 302

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 137/287 (47%), Gaps = 15/287 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    +  +GSFT AAE+L  + S++SRQ+  LE  + ++L  R++R L+LTE G   +
Sbjct: 7   LRALRAIVDAGSFTAAAERLGTTHSAMSRQLRQLEEHLQVRLLDRNSRRLSLTEAGRDYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  + +  +L+      +    +PSG +RI+    +    L   L  FL  YP + + L 
Sbjct: 67  REAAALLDRLQEADDRARAGQAQPSGTVRISVPQVVASQELPHWLPSFLQRYPQVTLDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D++ +D+     D A+R+   +  S L+ R+L +      AAP YL     P    +L 
Sbjct: 127 ADDQLVDVVGGGFDLALRIAASLPDSQLVARELASCPRILVAAPAYLARHGLPRQASDLA 186

Query: 188 KHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +H L+ F     ++P  ++     AT     G+     L+V++  ++    + G GI+L 
Sbjct: 187 QHTLLGFSPTPSMLPWQLQGPRG-ATASIEAGQ----RLRVDATPALYAAALAGMGISLF 241

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTV----YFC-YPEALKNTGKLKAF 286
               V+++    R++   + P++      YF  YP A     K++A 
Sbjct: 242 TALTVQEDLRAGRLIR--VLPAWHAGQRHYFALYPHARALAPKVRAL 286


>gi|295095336|emb|CBK84426.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 311

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 122/243 (50%), Gaps = 8/243 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF     +GSF  AA +LHLS+S++ + I+ LE  +G++LF+R  R   LT+ G+  +  
Sbjct: 10  VFVASVEAGSFAQAAVRLHLSRSAVGKSIARLEERLGVRLFHRTTRSQRLTDNGALFYER 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 ++   +  L+    + +G+LR+A  +  G+  +   L E    +P +++++   
Sbjct: 70  CLRALEEIRGAESLLETGKQQVTGRLRVAMPVLFGRQCVAPLLIELAQEHPGLELEMSFS 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R      SS L+ RKL    M   AAP YL    +P ++ +L +H
Sbjct: 130 DRVVDLVEEGFDMAVRNGTLQDSSVLVARKLGEHRMVLCAAPDYLLKNGQPQTVDDLRQH 189

Query: 190 NLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             I +   G ++P  + D++  +    P      S L ++   +I    + G G+A LP 
Sbjct: 190 TAINYTRAGRVLPWQLMDYDGTSRTFIP-----RSSLNMDDLQAICDAALAGHGLAWLPC 244

Query: 247 YIV 249
           ++V
Sbjct: 245 WMV 247


>gi|262395350|ref|YP_003287203.1| transcriptional regulator LysR family [Vibrio sp. Ex25]
 gi|262338944|gb|ACY52738.1| transcriptional regulator LysR family [Vibrio sp. Ex25]
          Length = 300

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 139/295 (47%), Gaps = 18/295 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 5   DDYIIFYHLIEQGSFSAAARHMSLTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  VY  + T +  +       SG ++++     G+ +L   + EF   YPDI I 
Sbjct: 65  FFTHAKAVYQAVATAEESIVGLGKNLSGNIKVSVPTISGELILPQVINEFNQKYPDINID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P   Q 
Sbjct: 125 MDLDNRFVDIVNERFDLAIRT-GVLPDSSLIARKLVDANWIVCASPQYLAKHGIPKQPQA 183

Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           LDKHN + +        E      D  +  TVD          L  N+   +    +LG 
Sbjct: 184 LDKHNCLVYSYQETGAHEWAFKDGDEVYQITVD--------GNLCTNNSSVLRNVALLGQ 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GI  +P  +V ++     L+++ +D       +Y  YP   +   K+K F + ++
Sbjct: 236 GIIYVPRVLVYEDLKQGRLIQLFKDETAKCLGIYAVYPYTRQQPEKIKIFIDHLY 290


>gi|15890853|ref|NP_356525.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15159148|gb|AAK89310.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 305

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 131/294 (44%), Gaps = 8/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD L+ F  VAR+G  + AA  L  S +++SR I  LE  +  KLF R+ RG  LT  
Sbjct: 5   FTWDDLQYFLAVARTGQLSSAARSLRTSHATVSRHIDRLEFSLKTKLFERNPRGYELTTV 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +  + E  Q ++ ES     G +R++             LK+F   +P I
Sbjct: 65  GRRLVDTVERIEAEAERLQSDISESGSLLRGVVRLSAPEGFSNFFFVERLKDFAATHPHI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++++   + + +S   AD A+ L  P ++   I  +++   +H YA+  YL    +   
Sbjct: 125 MVEMVTIQQIMALSRKEADVAVTLDPP-KAGPYINEQIIDYTLHIYASRSYLAGHPKITR 183

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L  H  I +  DLI     D+       R +        Q +S  + +   + G G+
Sbjct: 184 REDLPNHFFIGYVQDLIFSPGLDYM------RDVWPGLRPNFQSSSIFAQLTATLSGRGL 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LP++I    P+L  ++   +      +    +   N  ++++  +FI   AR
Sbjct: 238 CILPNFIAARFPDLQMVLPGDVELRRGYWLTSHQDFANVPRVRSLMDFILTTAR 291


>gi|72383949|ref|YP_293303.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72123292|gb|AAZ65446.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 304

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 134/299 (44%), Gaps = 14/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +   VF  V  SGSFT AA+ L L ++++SR++  LE  +G++L +R  R L LT
Sbjct: 1   MPLDMNDTLVFLKVVESGSFTAAADDLRLPKTTVSRRVRELEQRLGVQLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +   L      + +    P G LRI  +  L  NLL   L +F    P
Sbjct: 61  EAGTLYFETCRAIPGLLAKADAVVDQLRGVPRGTLRITASYSLSVNLLGPLLADFRAACP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I L+L+++ +D+  +  D A+R+   +  SS+  R L T     YA+P YL     P
Sbjct: 121 EVGIDLVLNHRTLDLVGEEIDLALRMGD-LPDSSMAARWLTTFPNRVYASPAYLARYGAP 179

Query: 181 LSIQELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
              ++L +H  +        G       +D    A  D PI       ++ +    +   
Sbjct: 180 AHPRDLGQHAALATRVARRSGTHAWPMRQDGTGEALADYPIH----PVIEADDPEVLKAP 235

Query: 235 CVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              G+G+ +  D I+  +     +V ++   +     ++  +P     + KL+AF +F+
Sbjct: 236 LFAGAGLMMATDMIMARHAAQRLVVPVLPGWVGRCPALHAVFPRGQVQSPKLRAFIDFL 294


>gi|209549940|ref|YP_002281857.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535696|gb|ACI55631.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 307

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 15/274 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GSF    + + LS+S+  + +  LE  +G +L  R  R L+LT++G   +  
Sbjct: 11  IFMAVVDAGSFIAGGQAMGLSRSAAGKAVIRLEDRLGARLLNRTTRTLSLTDEGRVFYER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   +   +  L   S  P G LR+      G+ ++   L+++L  +PDIQ+++   
Sbjct: 71  GLQILASVAEAEASLGGQSGMPRGLLRLTVPDAFGRLVVLPLLEKYLRAWPDIQVEVSFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   DI  D  D AIR+      + L+ R + T      A+P YL     P  I++L  H
Sbjct: 131 DHLSDIIEDGFDLAIRIGAAASDTRLVSRVIATYKTRLCASPSYLAANGAPREIEDLAAH 190

Query: 190 NLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           + + F +   +    F     +W+    R       S L+++S  +I    + G GIALL
Sbjct: 191 DCLIFANRNQRQGWRFRGKGGSWIKAQGR-------SRLRLDSGEAIRDAALAGLGIALL 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           PD+++  +     L +++ D+      +   YP+
Sbjct: 244 PDFLIAGDLAAGRLRQVLPDLEADDAKIVTLYPD 277


>gi|313108447|ref|ZP_07794451.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa
           39016]
 gi|310880953|gb|EFQ39547.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa
           39016]
          Length = 303

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 123/254 (48%), Gaps = 21/254 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  SG F+ AA +  ++ S++S+ I+ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCTF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   LE  +    E++  P G+LR++  +  G + L   + EFL  +P++ + +
Sbjct: 71  YERGVRILADLEEAERCASENAA-PRGRLRVSANVPFGHHFLLPLVPEFLAQHPEVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +DI     D A+R   P++SSSL+ RKL +  M    AP YL     P + Q L
Sbjct: 130 VLTDEVVDILEQRTDVAVRA-GPLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQAL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS----IMQYCVLG 238
             HN +             N++ T      R  GE  +  L  N+  S    + +  V G
Sbjct: 189 LGHNRL-----------GANYVRTRSGWPLRDAGEELVVPLSGNAQASDGEALRRLAVAG 237

Query: 239 SGIALLPDYIVKDN 252
            G+A L  + V+++
Sbjct: 238 LGLARLAAFQVRED 251


>gi|218516900|ref|ZP_03513740.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 307

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 138/288 (47%), Gaps = 24/288 (8%)

Query: 19  SFTHAAEQ---------LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F HAAEQ           +S S+I + ++ LE+ +G++LF R  R ++LTE+G+ L+  
Sbjct: 11  AFVHAAEQQSYVAAARLAGVSPSAIGKAVARLESRLGVRLFNRTTRSISLTEEGTVLYEH 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V   +   +  + +   +P G+LR++    +G +LL   L  F   +P+I++ +  +
Sbjct: 71  YKRVLDDMRDAEAAVSKGRDRPRGRLRVSVPHIVGHHLLMPILPGFTARFPEIELDIDFE 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ ID+  +  D  +R  + +  + LI R L   H    A+P YL     P +  +L +H
Sbjct: 131 DRVIDLITEGLDVVVRSGE-LADARLIARPLGEQHFVVCASPAYLDRHGRPETPDDLSRH 189

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245
             I F    P       W     RP  E    PR   L  N+  + ++    G G+A LP
Sbjct: 190 ACIHFK--YPSTGRTAPW---AFRPPSERLLLPR--SLTFNNTDAGLRAARDGLGLAHLP 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y+ + +     L+ ++ D + P  ++   +P   + + K++AF +F+
Sbjct: 243 VYVAEPHIRAGTLIPVLTDSMAPFGSLSLVWPSNRQLSPKIRAFVDFV 290


>gi|222111007|ref|YP_002553271.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221730451|gb|ACM33271.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 303

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 24/298 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +AR+G+   AA +  +  ++++R+I  LE ++G  LF R A G  LTE 
Sbjct: 1   MDWDNLRYFLELARTGTLAGAARRTGVEHTTVARRIQALEKQMGAPLFAREAAGHRLTET 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESS------VKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           G  L          +E   + ++ +S        PSG +R+  T   G  +L  +L    
Sbjct: 61  GRHL----LPAVEAMEAAVLGVERASPANSPGAGPSGLVRVGATEGFGTVVLAPHLARLT 116

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P + I L+   + + +S   AD  I L +P +  S+I  KL    +  Y    YL  
Sbjct: 117 QKHPHLSIDLLALPRMLHLSRREADIVISLERP-KRGSVIVTKLADYTLRLYGQREYL-- 173

Query: 177 CREPLSI--QELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
            R PL    ++L  H  I++ D  L  K ++  + L   +R         L+  S  +  
Sbjct: 174 ARRPLVAKREDLRHHAFISYVDDLLFTKELQFIDQLYPPER-------FALRSTSITAQY 226

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    G+G+A+LP ++   +P L R++      + T +   P   K+  +++A   F+
Sbjct: 227 EAVRAGAGLAVLPAFLADRDPVLARVLPHEAEFTRTFWMSMPAESKHLARMQAVWAFL 284


>gi|153833375|ref|ZP_01986042.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148870384|gb|EDL69310.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 299

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 109/187 (58%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT  G + +
Sbjct: 10  IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLTRTTRTLRLTHAGERFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +    ++   I   + + +  G +R+      +G++++   + EF+L YP+I + L
Sbjct: 70  QECEKALRDIDQALIAAVDDTQEVRGLIRVNCVGGYIGEDIIAKYVNEFMLEYPNITVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID+  D  D AIR+ + ++ +  I RKL+ I M   A+P+YLK   EP++ +EL
Sbjct: 130 DFSSPRIDLIEDQFDVAIRMGE-LEDAGFIARKLMMIDMVTLASPNYLKTHGEPVTPKEL 188

Query: 187 DKHNLIT 193
            KH  +T
Sbjct: 189 AKHRTLT 195


>gi|77458661|ref|YP_348167.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382664|gb|ABA74177.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 337

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 131/281 (46%), Gaps = 15/281 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           FD+   + VF  V   GS +  A  L  + S +SR IS LE  +G++L  R  R L+LT+
Sbjct: 34  FDYLADVEVFVTVVEKGSLSAGAVFLGTTPSVVSRAISRLEARLGVQLLRRTTRRLSLTD 93

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G      +   +  ++  +  +Q    + SG++R++     G   L   L  F   +P 
Sbjct: 94  AGVLYLEQSRAAFGLIDDAERTIQGQDGELSGRVRLSVPTTYGHYRLPAMLARFTRQHPQ 153

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L + N+++D+  +  D AIRL   +  S LI RKL    +   AAP YL+    P 
Sbjct: 154 VRVELSISNRNVDLVAEGFDLAIRL-GALPDSGLIGRKLEDAGLCVVAAPDYLRRAGTPQ 212

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQV-NSYLSIMQYCV 236
           S+ +L +H  + F  ++P       WL    R  GE R     + +QV +  L I+    
Sbjct: 213 SVDDLQRHACLPF--VMPSTGRVGPWLF---REQGEDREWLPSANIQVSDDVLGIVSLAE 267

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            G GI    D+IV+   +   LVR++E     S      YP
Sbjct: 268 QGLGICQTYDFIVRERIEGGRLVRLLEQSGGRSRPFSVIYP 308


>gi|54310460|ref|YP_131480.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46914903|emb|CAG21678.1| putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 305

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 128/283 (45%), Gaps = 27/283 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR    +A+ GSF  AA  L +  +++SR++  LE  +G +L  R +R + LT  G  
Sbjct: 11  DDLRALIAIAQHGSFRAAANALDIPPATLSRRLQRLEDTLGSQLVIRDSRNVALTPLGQN 70

Query: 66  LHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +  +L+ T  EL + SS  P G LRI+  + L    L     +FL LYP++ +
Sbjct: 71  YFERCQPLLDELQATTSELMDTSSSNPRGALRISAPVGLLTYQLMPLFNQFLALYPEVTL 130

Query: 125 QLI-LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            L  L N+  D S +  D   R+ ++P  +SS    K+        A+P YL     P  
Sbjct: 131 SLNHLSNQHHDYSQEQYDVVFRVGQQP--NSSFAAAKIGESQRTLVASPEYLAQYGIPHH 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---------RISCLQVNSYLSIMQ 233
             EL+ H+ +         + +F W  T    +  P         R++   +N   S+ Q
Sbjct: 189 PDELNHHSRLA-------TVPEFEWALTCKTDVAHPETIWINSPVRMAIADLN---SVKQ 238

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
             + G GIA LP+Y+V D      L  +M+D  +P   +Y  Y
Sbjct: 239 AAISGLGIACLPNYVVADALEKSTLTTMMDDWYSPPRPIYMLY 281


>gi|325926818|ref|ZP_08188123.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325542784|gb|EGD14242.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 344

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 131/290 (45%), Gaps = 17/290 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R+F  +    SFT AA  + + +S+ ++ I+ +E  +G++L  R  R +  T  G 
Sbjct: 45  FDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTLDGE 104

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+    +   ++  +   +   V P G LR+     L ++ L   L  F   YP IQ+
Sbjct: 105 LFHQRCMRILDDVDDAEGSFR--GVAPKGLLRVEVQGTLARHFLLPGLPAFFAHYPQIQL 162

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R   P++ S L+ R++  +     A P YL+    P  ++
Sbjct: 163 VMSESDRWVDLVEEGIDCVLRY-GPLRDSELVARRVAMLERLTCATPQYLRRFGLPAQLE 221

Query: 185 ELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            LD+H +     IT G + P   +    + T   P      S L V    S +    LG 
Sbjct: 222 ALDQHRMVGLRSITTGVVTPLEFQTAQGVRTFALP------SPLSVTGTESYLAGIRLGL 275

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GIA +P + V  +     LV I+ D   PS  V   Y  A + + +++ F
Sbjct: 276 GIAQVPRFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVF 325


>gi|260769871|ref|ZP_05878804.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|260615209|gb|EEX40395.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
          Length = 308

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 130/275 (47%), Gaps = 15/275 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA   SF+ AAE+L L ++S+S  I  LET+ G +L  R  R ++LT  G   +
Sbjct: 7   MHTFVRVAELASFSRAAEELGLPKASVSNHIQLLETQAGARLLQRTTRKVSLTPDGRTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  + E       ++  + SG++R+     + + ++  +L EFL  +P +Q++L 
Sbjct: 67  ERCLDLLAEFEELDTLFVQTEQQLSGRIRVDMPTGMAKGVVVPHLAEFLQQHPGVQLELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  +R  + +  S+LI RK+  + +  YA+P YL    EP +  +L 
Sbjct: 127 STDRRVDVVREGFDFVVRAGQ-LSDSALIARKVCDMAVRTYASPDYLARHGEPQTPDDLS 185

Query: 188 KHNLITFGDLI---PKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H L+ +   +   P   E  D   L T++          L VN+  S    C+ G G+ 
Sbjct: 186 HHQLVHYAQNLGGQPDGWEYWDGERLRTIE------MAGALTVNNAESYTAACLAGIGLI 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
             P+  V+    +  LV ++ +       VY  YP
Sbjct: 240 QTPESGVRKLVASGQLVEVLANFTCQPLPVYLLYP 274


>gi|33592134|ref|NP_879778.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33571778|emb|CAE41284.1| LysR-family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|332381550|gb|AEE66397.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 311

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 124/276 (44%), Gaps = 24/276 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VAR+ SF  AAE L + +S++SRQ++ LE  VG++L  R  R + LTE G    
Sbjct: 7   MELFVEVARTLSFGRAAENLAIPKSTLSRQVAELERSVGLRLLSRTTRRVELTEAGQLYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +      ELQ     PSG LR+    D G + L     EF   YP++   L 
Sbjct: 67  ERCQRIVAEARIAHEELQNLVETPSGPLRVNMPADFGTDFLSEAFTEFSRRYPEVTFYLD 126

Query: 128 LDNKD--------IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           L + +         D+S++  D        +  S+ I R L  +  H YA+P YL    E
Sbjct: 127 LASPEHAERVFQTCDVSIEIGD--------LPDSTHIARLLGVLPAHLYASPDYLARHGE 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P    +L +H  I F     +      W L + +R +     +   VNS   +     LG
Sbjct: 179 PQHPDDLPRHECIQFRAGTGRVT---RWPLNSGERHVEITPGNRFSVNSVSMVRNLATLG 235

Query: 239 SGIALL-PDYIVKDN---PNLVRIMEDVITPSFTVY 270
           +GIA+L P   V+++     L RI+ D +   F VY
Sbjct: 236 AGIAILAPMGNVREDIESGRLKRILPDWLAGPFPVY 271


>gi|186476004|ref|YP_001857474.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192463|gb|ACC70428.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 288

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +GS T AAE+  LS + + + I  LET++  +L  R  R  +LTE G + +
Sbjct: 1   MEVFVAVVEAGSLTAAAERFDLSSAMVGKHIRSLETQLSTRLLTRTTRRQSLTEIGRQYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L+I   +  G  L    + ++L LYP++ ++L 
Sbjct: 61  EQCRRILADVKAAESLAEAMTSAPRGTLKITVPLTYGVELFSPAMTDYLNLYPEVSLELD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+  D+  +  D A+R+ + +  SSL+ R L    M A A+P YL+    P +  +L 
Sbjct: 121 LSNRIFDLVDEGFDAAVRIGR-LPDSSLVARPLKPYRMRACASPSYLQRMGTPATPADLV 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F     + +      A  D  +   R    + N+  ++    + G G+ L P+ 
Sbjct: 180 HHECLGFLHWGREGLWRLGGDAEADYQL---RPGRFRANNGQALKMAALRGFGLVLQPEA 236

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++        LV ++ED +     V+  YP   + T KL  F +F+
Sbjct: 237 LLAREIGRGELVSVLEDYLPEGAPVHLIYPRDRQPTPKLTTFIDFV 282


>gi|21240858|ref|NP_640440.1| LysR family transcriptional regulator [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106131|gb|AAM34976.1| transcriptional regulator lysR family [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 303

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 17/290 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R+F  +    SFT AA  + + +S+ ++ I+ +E  +G++L  R  R +  T  G 
Sbjct: 4   FDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+    +   ++  +   +   V P G LR+     L ++ L   L  F   YP IQ+
Sbjct: 64  LFHQPCMRILDDVDDAEGGFR--GVAPKGLLRVDVQGTLARHFLLPGLPAFFARYPQIQL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R   P++ S L+ R++  +     A P YL+    P  ++
Sbjct: 122 VMSESDRWVDLVEEGIDCVLRY-GPLRDSELVARRVAMLERLTCATPQYLQCFGMPTQLE 180

Query: 185 ELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            LD+H +     IT G + P   +    L T   P      S L V    S +    LG 
Sbjct: 181 ALDQHRMVGLRSITTGVVTPLEFQTAQGLRTFALP------SPLSVTGTESYLAGIRLGL 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GIA +P + V  +     LV I+ D   PS  V   Y  A + + +++ F
Sbjct: 235 GIAQVPRFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVF 284


>gi|295680500|ref|YP_003609074.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440395|gb|ADG19563.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 303

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 134/289 (46%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +G+FT AAE L +  +S++R I  LE ++ ++L  R  R +T+T +G+  +
Sbjct: 7   MNAFVRVVEAGTFTKAAETLDMPNASLTRLIQKLEEDLKVRLLQRTTRSVTVTPEGAIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +    +     + +KPSG+LR+     +G  +L   L +F   YPDI I+L 
Sbjct: 67  ERVVRLLAEFADIESSTTHARMKPSGRLRVDAATAIGALVLVPALDDFYRTYPDIGIELQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+  D+  +  DCAIR  + +    L+ R++ +      A P +L     P S  +L 
Sbjct: 127 VGNERTDLIAEGFDCAIRAGR-VDEQFLVARQIGSFGFTTCATPAFLAAHGTPTSPDQLS 185

Query: 188 KHNLITFGDLIPKCM---EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              L T G +IP        F +L   DR  G      L VN   + +   +   GI   
Sbjct: 186 A--LPTIG-MIPSHAGYPPSFPFLYD-DRKDGLQLKHRLVVNDTNAYLAAGLASLGIIQA 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y V+D      LV ++ED   P+  V+  YP     + K + F +++
Sbjct: 242 PTYSVRDAIAAGKLVPLLEDWPQPTIPVHVIYPPNRYLSAKARVFIDWL 290


>gi|190573105|ref|YP_001970950.1| putative LysR family regulatory protein [Stenotrophomonas
           maltophilia K279a]
 gi|190011027|emb|CAQ44636.1| putative LysR family regulatory protein [Stenotrophomonas
           maltophilia K279a]
          Length = 311

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 16/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A +GS   AA  L LS S++ ++I+ LE E+G +LF R  R + LT++G  L 
Sbjct: 7   LLAFVRTAEAGSIVGAARVLGLSASAVGKRIARLEQELGTRLFQRTTRRVHLTDEGELLL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +       +L   Q +L +    PSG LRI     +G   L   L  F   YP +Q++L 
Sbjct: 67  QRCRRALDELSEAQADLAQRQHAPSGLLRIGLPT-IGYRFLLPVLPGFQQRYPQVQLELD 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  D  IR  + +  SSL  R+L        AAP YL+    P  + EL 
Sbjct: 126 FNDRIVDVVSEGLDAVIRSGE-LADSSLTARRLGGFRFILCAAPGYLQAHGTPGDVSELR 184

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H  + F     G L P  +      A    P     ++C  + + L+    C+   G+A
Sbjct: 185 MHTALRFRYPTTGKLHPWQLPGIEGDAGARLPTA---MTCNNMEAVLAAAIGCM---GLA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +PD++  D   +  L R++  + T        +P     + +L+ F ++
Sbjct: 239 WMPDFLAADALSDGRLQRVLPALPTHQGQFSLLWPGGRHPSARLRVFIDY 288


>gi|330829873|ref|YP_004392825.1| LysR-like transcriptional regulator [Aeromonas veronii B565]
 gi|328805009|gb|AEB50208.1| LysR-like transcriptional regulator [Aeromonas veronii B565]
          Length = 297

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 130/284 (45%), Gaps = 25/284 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L VF +VAR GSFT AA +L L+QS +SR I  LE  +G++L  R  R L+LT+ G
Sbjct: 9   NYNDLHVFMLVAREGSFTKAAARLELAQSGVSRTIRDLEARLGVQLLMRTTRSLSLTQAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+R     +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 69  EQLYRTAQGCFQSLDAGLATLAHYRDTPSGTVRINASQHAIDKVLLPKLTIFRQRYPDIR 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ ++I  +  D  +RL   +    +  R    + M   A P +      P + 
Sbjct: 129 LELISESRFVNIIDERFDAGVRLGDEVDEGMVAVRITPDLEMVMVATPDHFLQYGFPQAP 188

Query: 184 QELDKHNLITF----GDLIPKCMEDFNW------LATVDRPIGEPRISCLQVNSYLSIMQ 233
            +L  H  I +    G L       + W       A   RP G+   S    +SY+    
Sbjct: 189 ADLAGHPCIAYQFADGSL-------YQWELWQEGKAIKHRPQGQWVFS----DSYMEAAA 237

Query: 234 YCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274
              +G G+A +P+ +V D      L+++++        +Y  YP
Sbjct: 238 -AKMGLGLAYVPEELVSDELERGILIQVLKPYSHRLAGLYLYYP 280


>gi|262279328|ref|ZP_06057113.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259679|gb|EEY78412.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 299

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 144/295 (48%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYSLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QL++ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL    +
Sbjct: 121 EIRLQLMVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGD 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLG 238
             + ++L +H +++  +   + ++    L   D    + ++S + + + + ++ Q     
Sbjct: 181 IKNPEQLSEHRILSLSE---EHLDQQFILHGPDNQQKKIKVSPIVMGTNIHMLAQLASQN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLP+   +D   +  L++I+ +   P    +  YP      G L A R FI
Sbjct: 238 CGIALLPESAAEDFLKSGQLLQILPEWKAPHGVFHAVYP---SRRGLLPAVRVFI 289


>gi|104781266|ref|YP_607764.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110253|emb|CAK14960.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 303

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 142/290 (48%), Gaps = 13/290 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  VAR  SF   A++  +S + +S++I  LE  +G++L +R  R ++++E+G +
Sbjct: 8   DDLDIFLQVARRASFAAVADERGMSAAFVSKRIRLLEESLGVRLLHRTTRRVSVSEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +++   +++  ++    +L     +P+G+LRIA+++ LG+  +   L E    YP + I+
Sbjct: 68  VYQWAQQIFDTVQRMDDDLNAGQREPAGQLRIASSLGLGRRFVAPALSELAARYPRLDIR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  LI + L        AAP YL     P  + +
Sbjct: 128 LDVHDRLVDLIAEGVDLDIRVGNVI-APHLIAKPLARNRRVLCAAPSYLAEHGAPRVLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H+ +    +I +    F  L  ++ P GE  +     L  N      Q+C+ G GI 
Sbjct: 187 LASHDCL----VIKERDHPFG-LWHLEGPQGEESVRVTGALSSNHGEVAHQWCLDGRGIL 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L   + V D   +  LV+++ D    +  ++  Y   L  + K++    F
Sbjct: 242 LRSWWDVYDSIADGRLVQVLPD-YQQAADIWAVYTAPLAGSAKVRVAVEF 290


>gi|116049070|ref|YP_792128.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390492|ref|ZP_06879967.1| transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|115584291|gb|ABJ10306.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 291

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 138/288 (47%), Gaps = 16/288 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA  LH+ Q+++ R+++ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDTRVFLALCREHTLRGAARALHIDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G        E+  K+E + +EL   +     + SG++R++TT  L  + +   L    L 
Sbjct: 61  GE----AAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLE 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +PDI++ L   +  +D+     D AIR  +P ++  LI RKL +  M  +A+  YL+   
Sbjct: 117 HPDIRVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNG 175

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P+  +    H+L+ +        E    L     PI + R+  + VNS + + Q    G
Sbjct: 176 VPVPGERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARG 230

Query: 239 SGIALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKA 285
            G+  LP Y+  +   LVR+  +      + V+    + L++T +++A
Sbjct: 231 LGLCELPLYM-GERDGLVRVWPQRERRRPYEVWMVTHKDLRHTARVRA 277


>gi|153001935|ref|YP_001367616.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151366553|gb|ABS09553.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 299

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 135/292 (46%), Gaps = 39/292 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +++  D +R+F+VVA+ GSF  AA+ L +  S++SR+I+ LE  +G++L +R A  + LT
Sbjct: 3   LNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +       ++ +L     EL     +  GKLRI+  I+     L  +L  F   YP
Sbjct: 63  ATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRHYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-----------HMHAYA 169
           +I I L L N +ID+S +  D A R+ +P +    I R L TI           H HA  
Sbjct: 123 NIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISFVLCASTSATHWHALQ 181

Query: 170 APHYLKN----CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQ 224
           A   L+       +P+ I  L +HN+           +DF +         EPR +  L 
Sbjct: 182 AIEALEQHPVIIAKPVKIWRL-QHNITG---------QDFEF---------EPRGNIKLA 222

Query: 225 VNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           V+      Q  V G GI LLP  +  +   +  LV+I+ +      T Y  Y
Sbjct: 223 VDDMAIASQAVVAGLGIGLLPISMASEQIQSGKLVQILPEWQGIPRTAYLMY 274


>gi|157163000|ref|YP_001460318.1| LysR family transcriptional regulator [Escherichia coli HS]
 gi|312972208|ref|ZP_07786382.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Escherichia coli 1827-70]
 gi|157068680|gb|ABV07935.1| transcriptional regulator, LysR family [Escherichia coli HS]
 gi|310334585|gb|EFQ00790.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Escherichia coli 1827-70]
          Length = 299

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + +NLL   L EFL  +P I+++L 
Sbjct: 67  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             N+ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHNRPVDILHDGFDCVIRT-GALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|303247390|ref|ZP_07333663.1| transcriptional regulator, LysR family [Desulfovibrio
           fructosovorans JJ]
 gi|302491304|gb|EFL51193.1| transcriptional regulator, LysR family [Desulfovibrio
           fructosovorans JJ]
          Length = 295

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 19/260 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +   VAR  SF+ AAE L +S S++SR+I  LE  +G+ LFYR  R + LT+ GS L 
Sbjct: 8   LPLLAAVARQRSFSKAAEILGMSASTLSRRIKLLEERMGVLLFYRDTRNVKLTDTGSVLI 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +     +  +  KPSG +R+    D+ +  ++G L +F   +PDI++ L 
Sbjct: 68  ERCEFILDEAQKAYDSVVTNMRKPSGLVRVCMFRDMYEEHMRGMLLDFATRWPDIRMDLT 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                +D+ +D  D A  L  P  +  L+ RKL+TI    YA+P   K+   P+ ++  D
Sbjct: 128 FAEHSVDLRIDPYDVAF-LIGPSIAPPLVARKLLTIEPFLYASPELFKH--HPMPVEPKD 184

Query: 188 KHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H L       FG   P  M + N    VD    EP+ +    +S      + + G GIA
Sbjct: 185 LHRLPCIVLERFGRRWP--MHNGNRQVIVD---IEPKYT---FSSVEMCRDFALAGHGIA 236

Query: 243 LLPDYIVKDNPN---LVRIM 259
           LL D +   +     LVR++
Sbjct: 237 LLRDLLAAPDETAGRLVRVL 256


>gi|107022543|ref|YP_620870.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116689492|ref|YP_835115.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170732798|ref|YP_001764745.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105892732|gb|ABF75897.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116647581|gb|ABK08222.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169816040|gb|ACA90623.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 302

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 9/299 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  L  F  +  +GS + AA +L LS S +S++++ LE+ +G++L +R  R  TLT+ G
Sbjct: 6   DFPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESRLGVRLLHRTTRQQTLTDDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  +++     SG LR+    +LG+  +   +  F   +P + 
Sbjct: 66  AQFHAQVLRILAEVEHAETLMRDRRGTVSGVLRVTAPGELGRLRIAPLVAAFQQRHPQLT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P YL     P   
Sbjct: 126 VQLMLTDAVVDLLAADIDVAVRIGN-LADSTMIARELAPNHRVLCASPGYLAAHGWPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I  GD  P+    F+        +     + L  N   +     + G+GIAL
Sbjct: 185 AELRAHRCIVMGDQ-PRAEWRFD---GAQGGVAVEVTAALLTNDGGAARTLALEGAGIAL 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD-WK 298
              + V    D   LVR++      +  ++  YP A     +++ F +F+  + RD W+
Sbjct: 241 KSIWDVGADLDAGRLVRVLPAFEASAAPLHAVYPGARHVPLRVRTFVDFLREQLRDAWR 299


>gi|330821893|ref|YP_004350755.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373888|gb|AEA65243.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 299

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 23/261 (8%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH---RVTSEVYHKLETTQI 82
           +L LS S+I++ I+ LE  +G++LF+R  R +TL+++G ++H   R+  E    LET  I
Sbjct: 25  ELGLSPSTIAKNIARLEARLGVRLFHRTTRQVTLSKEGEEIHARCRLILEEVESLETAAI 84

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
           E +   V+  G LRI   +  G+ ++   L++    +P + I     ++ +D+  D  D 
Sbjct: 85  EAR-GEVR--GTLRIDMPLSYGKQVVMPVLRQLNARHPALTIDARFSDRTVDVVKDGLDA 141

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202
           AIR+  P+  SSL+ R+    +   YA+P YL+   EP S  EL +H  + F   +P   
Sbjct: 142 AIRI-GPLADSSLVGRQFDAQYFCTYASPAYLEQHGEPASPDELGEHTCLLF--RVPSTG 198

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGIALLPDYIVK---DNP 253
            +  W     R     R   L  +S +      ++++  V G G+   P Y+     +N 
Sbjct: 199 RERAWHFRSGR-----RERSLTPDSRMYLGDGEALIEAAVAGLGLVQTPRYLATRALENG 253

Query: 254 NLVRIMEDVITPSFTVYFCYP 274
            LV +++    P   +   YP
Sbjct: 254 ELVEVLKRHRAPPLPISLVYP 274


>gi|323499380|ref|ZP_08104356.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315565|gb|EGA68600.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 303

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 139/297 (46%), Gaps = 23/297 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L+VF  + + GS   AA +L ++  S+S+ +  LE  VG+ LF R  R + LTE G 
Sbjct: 6   YNQLQVFQAIVQEGSIRGAARKLAMAAPSVSQSLKLLENNVGLTLFNRTTRKIELTEAGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH  T      L      +QE + +PSGKLRI     +    L+    EF   YP I++
Sbjct: 66  LLHERTLAAMESLNYALESVQELTDEPSGKLRITLPKFVYNTYLKSRFAEFCRQYPQIEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSI 183
           ++ + +  +DI  +  D  IR    I    ++ RKL      A +A+P YLK    P S+
Sbjct: 126 EISISDATLDIISEGIDLGIRFGN-ILEEGMVARKLTPPMKEALFASPSYLKQYGVPTSL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++L +H LI +  +        N +       V+ P G      L VN    ++     G
Sbjct: 185 EDLAQHKLIQYRFITSNQYAPLNLIEDGQQTGVEIPYG------LVVNDTDLMIDAAKEG 238

Query: 239 SGIA--LLPDYIVK-DNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI   +LP    + ++ +LV ++E +    PS  +YF      +N+ K+K  R  I
Sbjct: 239 LGIGRLVLPSLEHELESGDLVPVLEPMWPTYPSLYLYFS-----RNSQKVKRVRVLI 290


>gi|227820918|ref|YP_002824888.1| putative LysR family transcription regulator protein [Sinorhizobium
           fredii NGR234]
 gi|227339917|gb|ACP24135.1| putative LysR family transcription regulator protein [Sinorhizobium
           fredii NGR234]
          Length = 293

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 132/289 (45%), Gaps = 9/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +RVF  VAR+G    A+++L ++ +++SR+++ LE  +  +L  R   G  LT +
Sbjct: 1   MDWDDVRVFLAVARTGQILAASKRLGINHATLSRRVTALEETLKTRLLVRRPNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q ++       +G +RI      G + L   L      +P++
Sbjct: 61  GEIFLSAAERMETEMLAAQSQIGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLTARHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL+   +   +S   AD AI + +P Q   L+  KL    +  YA+  YL     P +
Sbjct: 121 KLQLVPVPRSFSLSQREADIAITIERPEQ-GRLVSSKLTDYTLGLYASADYLARYGTPRT 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           I +L  H  I +  DLI       N+ A + R       +  +++S     +     +G+
Sbjct: 180 IDDLKNHRRIGYVEDLI--FTPSLNFSAEIMRSWD----ASFEISSATGQTEAVRSSAGV 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +L +YI +  P L R++ D  T     +  Y E+ +   +++   +F+
Sbjct: 234 GILHNYIARHYPELTRLLPDT-TIRRAYWTTYHESARELVRVRTVVSFL 281


>gi|206559844|ref|YP_002230608.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035885|emb|CAR51776.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 302

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 137/290 (47%), Gaps = 8/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  L  F  +  +GS + AA +L LS S +S++++ LE+ +G++L +R  R  TLT+ G
Sbjct: 6   DFPALDTFARIVSAGSLSAAARELDLSLSVVSKRLTHLESRLGVRLLHRTTRQQTLTDDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  +++     SG LR+    +LG+  +   +  F   +P + 
Sbjct: 66  AQFHAQVLRILAEVEHAETLMRDRRGTVSGVLRVTAPGELGRLRIAPLIAAFQQRHPQLT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P YL     P   
Sbjct: 126 VQLMLTDTVVDLLAADIDVAVRIGN-LADSTMIARELAPNHRVLCASPGYLAAHGWPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I  GD  P+    F+        +     + L  N   +     + G+GIAL
Sbjct: 185 AELRAHRCIVMGDQ-PRAEWRFD---GAQGDVAVEVTATLLTNDGGAARTLALEGAGIAL 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V    D   LVR++     P+  ++  YP     + +++ F +F+
Sbjct: 241 KSIWDVGADLDAGRLVRVLPAFEAPAAPLHAVYPGGRHVSLRVRTFVDFL 290


>gi|197123749|ref|YP_002135700.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173598|gb|ACG74571.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 313

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 119/274 (43%), Gaps = 9/274 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + +R F  VA   SFT AA+ L +S+S +S ++  LE E+G  L  R  R + L+
Sbjct: 1   MAMDLETVRAFVKVAELTSFTQAADHLGVSKSRVSLRVRALEDELGTHLLQRTTRAVRLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +       +    E      Q       G LR+   I+  +  +   L EFL  +P
Sbjct: 61  PDGERFLARARRLLADAEEVAGMFQAPRAL-RGTLRVDLPINFARQHVIPRLPEFLAAHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++QL   ++ +D+  D  DC +R+   +  S L+ R+L  + M   A+P YL     P
Sbjct: 120 HLEVQLSTTDRRVDVVRDGFDCVLRI-GALADSGLVARRLGVLRMVNCASPAYLLRHGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +LD+H L+ +          F +    DR    P  + + VN+  + +  C+ G G
Sbjct: 179 RDLADLDRHVLVHYSGRFGADAPGFEYRDG-DRYKERPMRAVVTVNAADAYLAACIAGLG 237

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
           I   P         +  + E  +      + C P
Sbjct: 238 IIQAPRI------GMASLAEGTLVEILPAFTCAP 265


>gi|311106740|ref|YP_003979593.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761429|gb|ADP16878.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           111 [Achromobacter xylosoxidans A8]
          Length = 302

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 140/295 (47%), Gaps = 20/295 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA   SFT AA ++ +S++++S+ +  LE  + +KL YR  R ++LTE+G +L+ V 
Sbjct: 12  FAHVAHHRSFTKAAAEMGVSRANLSQNVKALERRLNVKLLYRTTRDMSLTEEGQRLYDVW 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 +E T   + +   +PSG +R+ T+    + LL  +L+EF   YP +Q++L++D+
Sbjct: 72  YPALIAVERTVRTMHDMRDEPSGLVRVNTSRVAAKTLLDPHLQEFCTRYPRLQLELVMDD 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              +I  +  D  IR+ + +    +       + M   A P Y +    P++  +L +HN
Sbjct: 132 ALANIVAEGCDAGIRIGESLAEHMVAVPITSALEMAVVATPAYFEQHGLPVTPADLSRHN 191

Query: 191 LITF----GDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVLGSGI 241
            + F    G + P       W  T     G     EP+   +  N    +++  + G+G+
Sbjct: 192 CLRFRQTRGAIHP-------WEFTSPEAGGHTFTVEPQGRII-TNDDDGMIRAALQGAGL 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               D  V+   ++  LVR++ +   P    Y   P   +   K++A  +F+  K
Sbjct: 244 MQHIDIAVQQHLESGALVRVLHNWCKPFAGFYIYAPTRAQMPAKVRALIDFLVEK 298


>gi|296156371|ref|ZP_06839209.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295892970|gb|EFG72750.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 307

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 19/299 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF+ AA  L +S S++S  + GLE  + ++LF R  R + LTE G +L
Sbjct: 8   ELTAFIAIAHQRSFSAAARTLGVSPSALSHAMRGLEARLDVRLFNRTTRSVALTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R        LE    E   +  +PSG +R++ +    + L+Q  L  FL  YPDI ++ 
Sbjct: 68  LRRVGPAIADLEDAVNEAASARNRPSGSIRVSASESAARPLVQHVLPGFLATYPDIHVEF 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D + +DI  +  D  IR+ + +    +  R    +   A A+P Y+    +P +  +L
Sbjct: 128 VVDTRLVDIVAEGFDAGIRVLQDVPRDMIATRFGPDMRFIAVASPDYVARHGKPEAPHDL 187

Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  I F    G L    +E     A+VD  +  P    + + +   +++  + G GIA
Sbjct: 188 AQHRCIRFRFESGALYRWDLEYRGKSASVD--VDGP----MTLGNLNLMVEAALAGIGIA 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            + D +  +   +  LV+++ +  +PSF  +   YP        L+ F   +    R+W
Sbjct: 242 WVSDQLAAEYLASGRLVQLLAE-WSPSFPGLCLYYPANRHPPTALRLFAQAV----REW 295


>gi|296104957|ref|YP_003615103.1| putative DNA-binding transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059416|gb|ADF64154.1| putative DNA-binding transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 308

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVELGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L     E L  YP + + L
Sbjct: 66  YQGCRRMMHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAAMTAEMLKEYPGLTVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L ++ M   A+  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVVCASKSYLAQYGVPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +        E         R + E R      N  ++I ++ V G+GIA +P
Sbjct: 185 ANHSWLEYSVRPDNEFELIAPEGISTRLLPEGRFV---TNDPMTISRWLVAGAGIAYVP 240


>gi|271501940|ref|YP_003334966.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270345495|gb|ACZ78260.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 294

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 137/280 (48%), Gaps = 17/280 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F +VAR GSFT AA +L L+QS +SR I  LET +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMLVAREGSFTKAATRLGLTQSGVSRAIRELETRLGVQLLTRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+R T   +  L+     L      PSG +RI  +      +L   L  F L YPDI+
Sbjct: 66  EQLYRTTLTGFDSLDLGLATLAHFRDTPSGTVRINASQHAIDKVLLPKLATFRLHYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ ++I  +  D  IRL   +    +  +    + M   A P + ++   P + 
Sbjct: 126 LELISESRFVNIIDERFDAGIRLGPEVDEGMIAVQITPDMEMVVVATPDHFRHYGFPQTP 185

Query: 184 QELDKHNLITF----GDLIPKCMEDFNW-LATVDRPI-GEPRISCLQVNSYLSIMQYCVL 237
            +L  H  I +    G L       + W L    +P+  +P+   +  +SY+       L
Sbjct: 186 ADLVVHPCIAYQFADGSL-------YQWELWQDGKPLRHKPQGQWVFSDSYMEAAA-ARL 237

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           G G+A +P+ +V    +   L+R+++        ++  YP
Sbjct: 238 GLGLAYVPEELVTPDLEQGTLIRVLQRYSHRLAGLHLYYP 277


>gi|304397938|ref|ZP_07379814.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304354649|gb|EFM19020.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 322

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 134/305 (43%), Gaps = 40/305 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  +  SGS + AA QL  +Q ++SR++  LE  +G+KL  R    L LT+ G +
Sbjct: 11  DLMQTFIRIVESGSLSAAAAQLGTTQPTVSRRLQTLEQRLGLKLILRTTHALKLTDDGER 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++     T + EL  +S  P G LR+      GQ+ L   L ++L  YP + I+
Sbjct: 71  CYAQARQLLATWHTLEDELTGASADPVGTLRVRAPHAFGQDQLIAPLVDYLHRYPRLNIE 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L+++  D   +  DCAI++  P    S++   L  +     AAPH L        I++
Sbjct: 131 WMLNDRTPDFMAENVDCAIQVGAPT-DPSVVAVLLAEVPRIVVAAPHLLAQYPPIAQIEQ 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD--------------RPIG---EPRISCLQVNSY 228
           L                 D  WLA                 +P+     PR+S    +S 
Sbjct: 190 L----------------RDLPWLALTSFYRNEVALQKIDDGQPVNLAITPRLSS---DSL 230

Query: 229 LSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            ++ +  + G G A++  + V++   + +LV+++     P   V+  YP A     +L+ 
Sbjct: 231 YAVRKAALAGMGAAIVSSWAVQEDLADGDLVQLVPAWQAPPLPVWLTYPWASYYPARLQH 290

Query: 286 FRNFI 290
           F   I
Sbjct: 291 FFAMI 295


>gi|296114809|ref|ZP_06833458.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978623|gb|EFG85352.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 342

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 130/290 (44%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V  S SFT AAE L+L +SS+S  I  LE  +G +L  R  R +T T  G  
Sbjct: 5   DLFRVFARVVESASFTRAAETLNLPRSSVSTAIQELEGRLGARLLARTTRSVTPTADGMA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   +E  +   +     P G LR+     +G+ L+   L EFL  YP + I+
Sbjct: 65  FYDHCLRLIADVEEAENLFRHDGASPRGLLRVNLPGRIGRLLVAPRLPEFLGRYPGVDIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  D  DC +R+  P+  S LI R++  + +   A+P YL     P    +
Sbjct: 125 LGVTDRAVNLVEDGIDCVLRV-GPLHDSGLIARRMGDLDLVNVASPAYLAQHGVPQVPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L  H  + +       +E + W    T +     P    + VNS  + +  C+ G G+  
Sbjct: 184 LAHHLAVRYASPSTGRIEAWEWEEGGTTN---SLPMSGRVTVNSAEASIACCLAGLGLIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V     +  LV ++         +   YP     + +++ F +++
Sbjct: 241 VPAYDVAALVQSGALVEVLSQWRAAPLPMALLYPHRKHLSRRIQLFADWL 290


>gi|260753534|ref|YP_003226427.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552897|gb|ACV75843.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 297

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 130/282 (46%), Gaps = 23/282 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L VF  VAR  SFT AA  L  SQS++S  +  LE  +GI+L  R  R + LTE G
Sbjct: 5   DLVDLNVFMTVARELSFTRAAAHLGTSQSTLSYTVRRLEERLGIRLLARTTRQVALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSV---KPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +L    +++   ++T   EL+  S+   KPSG +R+  +      ++    +  L  YP
Sbjct: 65  ERL---LTQIGPAMDTIDTELKSLSMLQEKPSGTVRLTLSEHAANTVVWPVFERILPEYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++L +D+  +DI  D  D  +RL   I    +  R    + M    AP YL+    P
Sbjct: 122 DIHVELSVDSGMVDIVADRFDAGVRLGDTIAKDMIATRIGPDLRMVIVGAPEYLRTHTSP 181

Query: 181 LSIQELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQY 234
              Q+L  H  I     T G L       + W    D      R+    V S  S I++ 
Sbjct: 182 QRPQDLASHQCINQRMQTSGSL-------YAWELEKDGQEIRVRVDGQLVFSNTSLIVKA 234

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
            + G G+A + +  V+++     LV++M D   PSF  Y+ Y
Sbjct: 235 ALAGFGLAFVMEDHVREHLREGKLVQVMAD-WCPSFPGYYLY 275


>gi|261378495|ref|ZP_05983068.1| transcriptional regulator, LysR family [Neisseria cinerea ATCC
           14685]
 gi|269145038|gb|EEZ71456.1| transcriptional regulator, LysR family [Neisseria cinerea ATCC
           14685]
          Length = 303

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 98/179 (54%), Gaps = 1/179 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADSLGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    +L+   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSLICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L     P + +E+
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLMRNGVPKTPEEV 184


>gi|323516185|gb|ADX90566.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
          Length = 293

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 34/310 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L+ F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLQFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60

Query: 61  EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            +G  L  RV      ++E   +++++      G++RI T    G   L   L EF + Y
Sbjct: 61  PEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 115

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL     
Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKIYGSQNYLAQNPP 174

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228
              +++L +H  + +                +D  +  P + CL+            +S 
Sbjct: 175 IRRLEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 218

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           L+       G+G+A+LP ++  D P L  ++E  +  + T +      L++  ++K   +
Sbjct: 219 LAQQIAVSAGAGLAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 278

Query: 289 FIFLKARDWK 298
           ++  +A  ++
Sbjct: 279 YLRKQADKYQ 288


>gi|163858834|ref|YP_001633132.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262562|emb|CAP44865.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 293

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 18/281 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D LRVF  V  +GS + AAE L  + S +SR +S LET++G+ L  R  R + LT
Sbjct: 1   MALSSDALRVFLAVVDTGSMSAAAEFLGQTASGVSRSLSRLETQLGVTLLTRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   L+  +  ++    +P+GKLR+  +  +  + +   + EF   YP
Sbjct: 61  EEGQLFLQRARGIVGDLDDAEECMRIRRQQPAGKLRVDASAPVMLHCVVPYIAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L  +++ +D+     D A+R   P+  SSL  R L        A+P Y+     P
Sbjct: 121 EISLELTSNDRIVDLVEHRTDIALRA-GPLSDSSLHARPLRPSRRLVVASPAYVARRGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR---ISCLQVNSYLSIMQYCVL 237
            +++ L +H L+ F    P+ +  +       R  G      +  L  +S  +  Q  + 
Sbjct: 180 ATVEALRQHELLGFTQ--PETLNVWPL-----RHAGGAEFTIVPTLAASSGETQRQLAIN 232

Query: 238 GSGIALLPDYIVKDN---PNLVRIME----DVITPSFTVYF 271
           G GIA L ++++K +     LV+++E    D + P   VY+
Sbjct: 233 GVGIACLSEFMLKADLAEGRLVKLLENACTDYVQPMHAVYY 273


>gi|26989889|ref|NP_745314.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24984798|gb|AAN68778.1|AE016509_11 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 303

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 135/287 (47%), Gaps = 12/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A++GSFT AA  L L++S++ + I+ LE  + ++L  R  R L+LT++G      
Sbjct: 11  AFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGLVAFER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   L+  +  +     KP+G LR+   + LGQ  +   L ++L  +P+++  +   
Sbjct: 71  WRQILDDLDEVESTMALRRGKPTGTLRLTAPLSLGQRHVLPVLDQYLKQWPELRADIRFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R+  P + S L+ R +        A+P YL+    P    +L  H
Sbjct: 131 DRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPAYLEKRGVPQIPGDLYGH 190

Query: 190 NLITF--GD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + ITF  G+  +P        L   + P        L ++S  +++     G G+  LP 
Sbjct: 191 DKITFLAGEKAMPWRFHTEAGLHLCEDP------GRLNIDSSEAMLDGARAGFGLIHLPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           YI  D+    NLV ++     P+  +   YP     + +++ F + +
Sbjct: 245 YITGDDLRAGNLVEVLHAYRPPADPIRIVYPSKRHLSPRVRGFIDLL 291


>gi|15801839|ref|NP_287857.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 EDL933]
 gi|15831164|ref|NP_309937.1| transcriptional regulator LYSR-type [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749029|ref|ZP_02774051.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168756012|ref|ZP_02781019.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168762655|ref|ZP_02787662.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168769413|ref|ZP_02794420.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168775156|ref|ZP_02800163.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168782860|ref|ZP_02807867.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168788343|ref|ZP_02813350.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|168799641|ref|ZP_02824648.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|195937997|ref|ZP_03083379.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EC4024]
 gi|208811160|ref|ZP_03252993.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208815505|ref|ZP_03256684.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208819658|ref|ZP_03259978.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209400888|ref|YP_002270389.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217329169|ref|ZP_03445249.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254792922|ref|YP_003077759.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|261224322|ref|ZP_05938603.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257424|ref|ZP_05949957.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282424|ref|YP_003499242.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|12515432|gb|AAG56471.1|AE005373_5 putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EDL933]
 gi|13361375|dbj|BAB35333.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. Sakai]
 gi|187769290|gb|EDU33134.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188016574|gb|EDU54696.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|188999724|gb|EDU68710.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189356781|gb|EDU75200.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189361538|gb|EDU79957.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189367066|gb|EDU85482.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189371842|gb|EDU90258.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|189377969|gb|EDU96385.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|208724666|gb|EDZ74374.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208732153|gb|EDZ80841.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208739781|gb|EDZ87463.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209162288|gb|ACI39721.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209771458|gb|ACI84041.1| putative LYSR-type transcriptional regulator [Escherichia coli]
 gi|209771460|gb|ACI84042.1| putative LYSR-type transcriptional regulator [Escherichia coli]
 gi|209771462|gb|ACI84043.1| putative LYSR-type transcriptional regulator [Escherichia coli]
 gi|209771464|gb|ACI84044.1| putative LYSR-type transcriptional regulator [Escherichia coli]
 gi|209771466|gb|ACI84045.1| putative LYSR-type transcriptional regulator [Escherichia coli]
 gi|217317608|gb|EEC26036.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254592322|gb|ACT71683.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|290762297|gb|ADD56258.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|320189912|gb|EFW64564.1| LysR family transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. EC1212]
 gi|320637232|gb|EFX07058.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. G5101]
 gi|320642599|gb|EFX11847.1| LysR family transcriptional regulator [Escherichia coli O157:H-
           str. 493-89]
 gi|320647952|gb|EFX16660.1| LysR family transcriptional regulator [Escherichia coli O157:H-
           str. H 2687]
 gi|320653554|gb|EFX21659.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659143|gb|EFX26735.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|326341002|gb|EGD64795.1| LysR family transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. 1125]
 gi|326343243|gb|EGD67010.1| LysR family transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. 1044]
          Length = 299

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQLI
Sbjct: 69  SVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLI 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|226945188|ref|YP_002800261.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226720115|gb|ACO79286.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 308

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 134/295 (45%), Gaps = 30/295 (10%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++ R GS    A +L+L+  ++S++++ LE  +G++L  R  R ++LT +G   
Sbjct: 6   ELTFFTLLVRLGSLAATARELNLTPPAVSKRLAQLERRLGVRLLNRTTRSISLTGEGELY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  ++E  + ++  S   P G LR+   +  G+  +   +  F+  YPD+++QL
Sbjct: 66  LLNAQRILGEIEEMERQVSSSRAAPKGLLRVNAPLGFGRTYVGPAISSFVKRYPDVEVQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ I++  D  D  IR  + +  S LI R++ +      AAP YL+ C  P + ++L
Sbjct: 126 QLTDRPINLPNDAIDVGIRFGE-LPDSRLIARRIASNRRLLCAAPAYLQACGRPETPKDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------------CLQVNSYLSIMQY 234
            +HN I               L   D   G  R+S             L  N     + +
Sbjct: 185 MRHNCIV--------------LRQNDAAFGVWRLSRGKQSESIKVRGSLSTNEGEVALNW 230

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            + G GI +  ++ +     +  L  ++E+  TP   +Y  Y E L  + K+  F
Sbjct: 231 ALDGHGILMRAEWDLAKYLRSGRLEEVLEEYETPPADIYAVYLERLNLSAKVSFF 285


>gi|330980343|gb|EGH78462.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 302

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 141/290 (48%), Gaps = 10/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGS T A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEARLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  +  +   + +P G LR++  +      L   L  FL  Y ++ +
Sbjct: 64  SYYESALRLLAELEQVEQGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYREVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDVVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ + +G           W     ++P+       ++ N+   + +  + G GI  
Sbjct: 183 DLHTHDCLPYGH-----SRQAQWRFQGQEKPLTLNVSGRMRANNGELLRESAIAGLGITY 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +IV       +LVR+++D+     T+   YP+  + +  ++AF  F+
Sbjct: 238 LPTFIVSAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFL 287


>gi|313106107|ref|ZP_07792364.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310878866|gb|EFQ37460.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 291

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 138/288 (47%), Gaps = 16/288 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA  LH+ Q+++ R+++ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDTRVFLALCREHTLRGAARALHIDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G        E+  K+E + +EL   +     + SG++R++TT  L  + +   L    L 
Sbjct: 61  GE----AAFELAEKMECSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLE 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +PDI++ L   +  +D+     D AIR  +P ++  LI RKL +  M  +A+  YL+   
Sbjct: 117 HPDIRVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNG 175

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P+  +    H+L+ +        E    L     PI + R+  + VNS + + Q    G
Sbjct: 176 VPVPGERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARG 230

Query: 239 SGIALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKA 285
            G+  LP Y+  +   LVR+  +      + V+    + L++T +++A
Sbjct: 231 LGLCELPLYM-GERDGLVRVWPQRERRRPYEVWMVTHKDLRHTARVRA 277


>gi|260769020|ref|ZP_05877954.1| putative transcriptional regulator LysR family [Vibrio furnissii
           CIP 102972]
 gi|260617050|gb|EEX42235.1| putative transcriptional regulator LysR family [Vibrio furnissii
           CIP 102972]
 gi|315180759|gb|ADT87673.1| AphB/LysR family protein [Vibrio furnissii NCTC 11218]
          Length = 266

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 125/263 (47%), Gaps = 9/263 (3%)

Query: 32  SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91
           ++I+R+I  LE  + ++L  RHAR L+LTE G +     S +  +L +   E+ +     
Sbjct: 5   ATITRRIQALEDSLNLRLLNRHARKLSLTEAGERFFSDCSPLLQRLASMAEEITDECRGA 64

Query: 92  SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151
           SGK++I++  +L + ++     EF+  YP+I I+L   N    +     D   R+  P +
Sbjct: 65  SGKIKISSPYNLTKRMMMPMFNEFMKQYPEINIELTTSNHADQLDPTEWDVIFRV-GPQR 123

Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211
            SSLI RK+  +     A+P YL     P   +EL +H+L+    L+   + +      +
Sbjct: 124 DSSLIARKISEVKDILVASPDYLTKHPAPTHAEELSRHSLLKGYPLLKWQLSNSKGETVI 183

Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFT 268
           +   G       Q N+   +   C  G GI L+PD ++++   + +LVR++ D       
Sbjct: 184 NGDKGR-----FQANALNVVRSACSEGLGITLMPDVMLREFIADGSLVRVLSDWSANPRD 238

Query: 269 VYFCYPEALKNTGKLKAFRNFIF 291
           +Y  Y        K++ F +F+ 
Sbjct: 239 IYMLYNHKDHLPEKVRLFIDFVI 261


>gi|262402608|ref|ZP_06079169.1| transcriptional regulator [Vibrio sp. RC586]
 gi|262351390|gb|EEZ00523.1| transcriptional regulator [Vibrio sp. RC586]
          Length = 253

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 125/254 (49%), Gaps = 9/254 (3%)

Query: 41  LETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATT 100
           +E  + ++L  RHAR LTLTE G + ++  S +  +L +   E+ +     SG++RI+  
Sbjct: 1   MEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAP 60

Query: 101 IDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160
            +L + ++      F+  YPDI I+L++ N+  D+     D   R+  P + SSLI RK+
Sbjct: 61  SNLTKRMMMPMFNTFMRKYPDIHIELMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKI 119

Query: 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI 220
             +     A+P YL +  +P   +EL +H L+    L+   + +      V+   G  + 
Sbjct: 120 GEVKDILVASPTYLADHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETIVNTDRGRFQA 179

Query: 221 SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEAL 277
           S L V     +   C  G GI L+PD ++++   + +L++++ D  +    +Y  Y    
Sbjct: 180 SALNV-----VRSACSEGLGITLMPDVMLREFLSDGSLIQVLSDWSSNPRDIYMLYNHKD 234

Query: 278 KNTGKLKAFRNFIF 291
               K++ F +F+ 
Sbjct: 235 HQPEKVRLFIDFVI 248


>gi|163746312|ref|ZP_02153670.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380197|gb|EDQ04608.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 302

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 144/306 (47%), Gaps = 19/306 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+ +D +R F  V   GS + AA    +S +  S +I+ LE  +G++LF R  R L+ T
Sbjct: 1   MSY-FDNIRTFVRVYELGSMSAAARDQRVSPAVASARITQLEGHLGVRLFQRTTRSLSAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +    ++   +   +  +++ +  P G L +A  + +G+ L+  ++ EF   YP
Sbjct: 60  EQGRIFYDGACKILASVAEAEAGIEDVTDNPRGTLHVAAPLGVGRRLIAPHVPEFAETYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L L ++ +D++ +  D A  L +P + S+L  RK+        A+P Y+     P
Sbjct: 120 LVDVRLRLSDRKLDLTAEGLDVAFFLGRP-EDSTLRIRKVADCERVLCASPAYVAAHGHP 178

Query: 181 LSIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYC 235
            S  E+D+  HN +      P   E F W   +  P G  +       + +    +  + 
Sbjct: 179 RSGAEIDRGQHNCLNL--RFPGATE-FQW--QLQGPEGAAKYDVRGRFESDDGDVLTDWA 233

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFC--YPEALKNTGKLKAFRNFI 290
           + G+GIA+ P + + +   +  LVR++ED  TP   V     Y        K + F +F+
Sbjct: 234 LAGAGIAMKPLFEIAEHLRSGALVRVVED--TPPLPVQMACLYTHRRHQDPKTRLFMDFM 291

Query: 291 FLKARD 296
             +  D
Sbjct: 292 IARMED 297


>gi|120610047|ref|YP_969725.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120588511|gb|ABM31951.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 303

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 140/287 (48%), Gaps = 14/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R++  V  +G+FT AA+ L L ++++++ I  LE  + ++L  R  R +T+T  G+  +
Sbjct: 7   MRIYARVVEAGTFTRAADSLQLPKATVTKHIQALEARLRVRLLNRTTRRVTVTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +  +  +  +   PSG+LR+     + + L+  +L+EF   YPDIQ+ L 
Sbjct: 67  DRAVRLLADFDDIEASMTHARATPSGRLRVDVGTAMARLLIIPHLEEFHARYPDIQLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DC IR  + +   SL+ R++  +     A+P YL+    P   Q LD
Sbjct: 127 VSDRIVDLIGDNVDCVIRGGE-LTDQSLVARRIGLLEFITVASPAYLERHGTP--AQPLD 183

Query: 188 KHN----LITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             N    +I F     +    +F+    V    G  +++  + N+YL+ +   + G G+ 
Sbjct: 184 LENGHRSVIYFSPRTSRRYPLEFHRDGEVIEIGGPSQLAVNESNAYLAAL---LAGRGVG 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +     +   +  +LVR++ +   P   VY  YP     + +++AF
Sbjct: 241 QVTTLQAQGHLERGDLVRLLPEWSHPLLPVYVVYPPNRHLSARVRAF 287


>gi|289626642|ref|ZP_06459596.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649222|ref|ZP_06480565.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330869393|gb|EGH04102.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 297

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLQVARDQSFTKAATRLGVTPSALSHTMRGLEERMGLRLLARTTRNVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q+
Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPVYFERHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W    D      R+S     NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVSGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           +PD + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289


>gi|209809096|ref|YP_002264634.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
 gi|208010658|emb|CAQ81045.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
          Length = 293

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 131/258 (50%), Gaps = 9/258 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F  +  +G+ +  +    +  SSISRQ++ LE ++G++L  R++R + LTE G + 
Sbjct: 4   RLQYFNTIVETGNMSETSRIFDVQPSSISRQLAVLENDLGVRLINRNSRNIALTEAGHRF 63

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  + ++   L+  +  + +    PSG L ++ T+  G+ ++   L +F   YPD+ +++
Sbjct: 64  YSYSKQIILDLDEAKRVINDLQQVPSGMLNLSVTVGFGEAVIIPLLPKFKAAYPDVDLRV 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +  + +D+  +  D  IR    +  SS+I  +L T      A+P YLK    PL+I +L
Sbjct: 124 EITERIVDLIEENTDVVIR-SGNLTDSSMIATQLATNDFILCASPMYLKENGTPLAIDDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             +  I +G          NW    ++       + ++VN+     Q  +   G+AL+P 
Sbjct: 183 VNYLCIKYG-----YAGWGNWFLKGEKLEKIEIENSIEVNTVNGQKQLVLNHGGLALIPH 237

Query: 247 YIVK---DNPNLVRIMED 261
           + VK   +N +LV++M D
Sbjct: 238 WAVKNELENGDLVQVMRD 255


>gi|194364693|ref|YP_002027303.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347497|gb|ACF50620.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 314

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A +GS   AA  L LS S++ ++I+ LE E+G +LF R  R + LT++G  L 
Sbjct: 10  LLAFVRTAEAGSIVGAARVLGLSASAVGKRIARLEQELGTRLFQRTTRRVHLTDEGELLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +       +L   Q +L +    PSG LRI     +G   L   L  F   YP +Q++L 
Sbjct: 70  QRCRRALDELSEAQADLAQRQHAPSGLLRIGLPT-IGYRFLLPVLPGFQQRYPQVQLELD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  D  IR  + +  SSL  R+L        AAP YL+    P  + EL 
Sbjct: 129 FNDRIVDVVSEGLDAVIRSGE-LADSSLTARRLGGFRFILSAAPGYLQAHGTPGDVSELR 187

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + F    P   +   W L  ++   G    + +  N+  +++   +   G+A +PD
Sbjct: 188 LHTALRF--RYPTTGKLHPWQLPGIEGDAGARLPTAMTCNNMEAVLAAAIGCMGLAWMPD 245

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           ++  D   +  L R++  + T        +P     + +L+ F ++
Sbjct: 246 FLAADALADGRLQRVLPALPTHQGQFSLLWPGGRHPSARLRVFIDY 291


>gi|332186033|ref|ZP_08387779.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
 gi|332013848|gb|EGI55907.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
          Length = 296

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 130/283 (45%), Gaps = 12/283 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V   GS + AA  L ++Q SI+R I  LE E+G KLF R  RGL+ T+   
Sbjct: 7   WDVYRSFAAVLCEGSLSGAARALGMTQPSIARHIDALEQELGGKLFVRSQRGLSPTD--- 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           + H +       +   +   +  S +P   SG +RI+ +  +G   L   L +    +P 
Sbjct: 64  RAHALRPHAEALVNAARALRRTGSGEPDHVSGVVRISASQAVGVMHLPPILTDLRRAHPA 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L ++  D+    AD A+R+ +P Q  +L+ R++  + +  +A   YL     P 
Sbjct: 124 LTIELALSDEPDDLLQRRADIAVRMFEPAQ-QALVARQVGAVRLGFHAHRDYLDRRGIPG 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL  H+LI F             L  +DR      +  L+V+S  +       G GI
Sbjct: 183 TLAELRGHDLIGFDTQTNFIRAAMRHLPGIDRS-----MFALRVDSDAAQFAAIRAGFGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            +    I + +P LVRI+ D +     ++    E L+   + +
Sbjct: 238 GICQTAIARRDPALVRILPDALDLPLPLWIVMHEDLRRISRCR 280


>gi|83746962|ref|ZP_00944008.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83726382|gb|EAP73514.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 301

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 135/305 (44%), Gaps = 30/305 (9%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V  +G+FT AA QL +S   + + +  LET +G +L  R  R  +LT+ 
Sbjct: 6   DKLRGMETFVAVVDTGNFTEAAVQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTDA 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     V  ++   +  ++    +PSG LR++     G  ++      F   +P +
Sbjct: 66  GRVFYDDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQV 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D++ +  D A+R+  P+  + L+ + L    M   A+P YL    +P +
Sbjct: 126 RVELDLSNRMVDLADEGFDLAVRI-GPLGDADLVAKPLCAYRMAICASPDYLARHGQPET 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIG---EPRISCLQVNSYLSIM 232
             +L  H          +C+    W       L+  D P     +P  SC   N    + 
Sbjct: 185 PADLPAH----------RCLSHMVWNRRNAWQLSGWDGPTSWRDDPAFSC---NDGHGLR 231

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + G+G+ L P+ +V ++     LVR+++        ++  Y +  +   KL  F + 
Sbjct: 232 MAAIAGAGLLLQPEVLVAEDLASGRLVRVLQPYAPEPRPIHLVYRQDRRPLPKLTGFVDH 291

Query: 290 IFLKA 294
           +   A
Sbjct: 292 LLQHA 296


>gi|15596335|ref|NP_249829.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100591|ref|ZP_01364509.1| hypothetical protein PaerPA_01001616 [Pseudomonas aeruginosa PACS2]
 gi|218892896|ref|YP_002441765.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234272|ref|ZP_04927595.1| hypothetical protein PACG_00110 [Pseudomonas aeruginosa C3719]
 gi|9947058|gb|AAG04527.1|AE004543_11 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126166203|gb|EAZ51714.1| hypothetical protein PACG_00110 [Pseudomonas aeruginosa C3719]
 gi|218773124|emb|CAW28936.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 291

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 18/289 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA  LH+ Q+++ R+++ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDTRVFLALCREHTLRGAARALHVDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G        E+  K+E + +EL   +     + SG++R++TT  L  + +   L    L 
Sbjct: 61  GE----AAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLE 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +PDI++ L   +  +D+     D AIR  +P ++  LI RKL +  M  +A+  YL+   
Sbjct: 117 HPDIRVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNG 175

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P+  +    H+L+ +        E    L     PI + R+  + VNS + + Q    G
Sbjct: 176 VPVPGERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARG 230

Query: 239 SGIALLPDYIVKDNPNLVRI--MEDVITPSFTVYFCYPEALKNTGKLKA 285
            G+  LP Y+  +   LVR+    +   P + V+    + L++T +++A
Sbjct: 231 LGLCELPLYM-GERDGLVRVWPQRERRRP-YEVWMVTHKDLRHTARVRA 277


>gi|261212768|ref|ZP_05927052.1| transcriptional regulator LysR family [Vibrio sp. RC341]
 gi|260837833|gb|EEX64510.1| transcriptional regulator LysR family [Vibrio sp. RC341]
          Length = 295

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 125/280 (44%), Gaps = 17/280 (6%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+IQLI         +       R    + S S     L       YA+PHYL     P 
Sbjct: 121 IRIQLITTTPGQLPELHLDLFISREIDQLNSLSFKATPLFEYQAGFYASPHYLAKQGTPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           ++QEL +HN++ +G+         N    V    G+ RI+        +  ++      G
Sbjct: 181 TLQELTEHNVLCWGE---------NTFREVKTSQGK-RITLTGNFATTNPEALFYAGKAG 230

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            GI +    ++K+      LVRI+ DV     TV+  YP+
Sbjct: 231 MGIIVTGHIMIKEELKQGTLVRILPDVTIDQTTVFAYYPK 270


>gi|253690380|ref|YP_003019570.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756958|gb|ACT15034.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 295

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 17/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   +  GSF  A E L +S   +++Q++ LE  +G++L  R  R  +LT+ G + +
Sbjct: 7   MSVFVKASELGSFAAAGEALGISPQMVAKQVAWLEARLGVRLLNRTTRRQSLTDIGLRYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  + E      +E  V PSG +++   +  G +LL   +  +L  YPD QI L 
Sbjct: 67  ERCKVVLAEAEDADAVAREMQVTPSGIIQVNAPVTWGSHLLAPFITHYLARYPDTQIALT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D   D  +  IR+ + +  SS++   L    + A A+P YL     P +   L 
Sbjct: 127 LNDRMVDPIEDGFEVIIRIGE-LADSSMVAWPLQPYSLIACASPDYLAREGVPEAPASLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +H  + +G  +        W+   +      RP G      L  N + +++   + G GI
Sbjct: 186 RHACLIYG--VRTAATSCRWVFQKEGKSEEVRPQGR-----LFANDWNALLHAAIEGYGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P+ +++   D   LV+++ D   P+  V+   P   ++  K+K F + +
Sbjct: 239 TLGPEAVLRKEIDRGRLVQVLSDYDGPARPVHVMVPMGRRSAVKIKTFVDAV 290


>gi|317405038|gb|EFV85388.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 299

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 139/307 (45%), Gaps = 31/307 (10%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+    F  V ++ SF+ AA  L L +SS++  I  LE  +G  L  R  R L+LTE 
Sbjct: 2   DKLQAMTTFVRVVQAQSFSKAAATLALPRSSVTTTIKQLEALLGTPLLRRTTRSLSLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++ +     +  ++   +  L   +  P G++R+     +G+ L+   L+EF   YPDI
Sbjct: 62  GARYYAACQAILAQIAEAEHALAADAQTPRGRVRVDMPGAIGRALVVPRLREFEARYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L+++ +D+  +  DCAIR    +  S+L+ R L  +     A+P YL    EP S
Sbjct: 122 ELVLGLNDRPLDLVHEGIDCAIR-SGALADSTLVARPLGRLSWLTCASPLYLARFGEPDS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSY------- 228
           +  L  H ++ +  L        +W   VD   GE        R +  +  +Y       
Sbjct: 181 VAALAAHRVVNY--LSNASGRPLDWRFRVD---GEDVALALPGRYAVNETEAYLHCGLEG 235

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           L ++Q   L +GI L        +  L  ++         +   YP+A + T  +K F  
Sbjct: 236 LGLIQLSELAAGIYL-------RSGRLREVLAQARCAPVPIAIVYPQA-RATAAVKTFVE 287

Query: 289 FIFLKAR 295
           ++   AR
Sbjct: 288 WVITIAR 294


>gi|317053070|ref|YP_004119424.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953397|gb|ADU72868.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 295

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 132/293 (45%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++ F  VAR  SFT AA  L +S S++S  +  LE  +G++L  R  R +  TE G K
Sbjct: 2   NDIQAFIAVARERSFTKAAAMLGVSPSALSHTMRNLEERIGVRLLARTTRHVAPTEAGEK 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + ++ ++ +    + E    P+G +RI  + +  + LL+  L  FL  YPDI ++
Sbjct: 62  LLLSVAPLFEQINSEIERIAELRATPAGNIRITCSDNAAEELLRPMLPAFLAQYPDISVE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +     P Y +    PL+ Q+
Sbjct: 122 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRMGPDWRLVVVGTPEYFQANPVPLTPQD 181

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +H  I       G +     E       +   +  P IS    NS L +M   + G G
Sbjct: 182 LARHRCINIRHSPAGSVYAWEFEKEGRKLNIR--VNGPLIS----NSILHVMNGALDGIG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A +PD + + +     LV ++ D  +P F  +  Y    +NT    AF  F+
Sbjct: 236 LAYVPDAMAQPHIAAGRLVEVLSD-WSPLFEGFHLYYPNRRNTS--SAFAAFV 285


>gi|304411266|ref|ZP_07392881.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307306549|ref|ZP_07586292.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304350459|gb|EFM14862.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306910840|gb|EFN41268.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 329

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 103/189 (54%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  GS 
Sbjct: 4   EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P + ++
Sbjct: 64  FYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I  ++ +D+     D A  +   + +  L+ R + T  +  YA+P YL     P + +E
Sbjct: 124 VISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAAHGTPKTPKE 183

Query: 186 LDKHNLITF 194
           ++ HN+  F
Sbjct: 184 IEAHNVSMF 192


>gi|302186195|ref|ZP_07262868.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 305

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 136/290 (46%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   LE  +     +  +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLEDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PLS+Q
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLQQHGTPLSLQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL +H +I +            ++  VD    E   +C + VNS    +  C  G G+  
Sbjct: 183 ELAQHQVIEYFSTSTGKRNGLEFM--VDGMDVEHASACSIAVNSADGYVAACEAGFGLIQ 240

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V        LV ++     P   +   YP   + + +++ F +++
Sbjct: 241 VPRYHVATQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWL 290


>gi|156975122|ref|YP_001446029.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156526716|gb|ABU71802.1| hypothetical protein VIBHAR_02849 [Vibrio harveyi ATCC BAA-1116]
          Length = 301

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 109/187 (58%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT  G + +
Sbjct: 10  IRSFVMIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLTRTTRTLRLTHAGERFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +    ++   I   + + +  G +R+      +G++++   + EF+L YP+I + L
Sbjct: 70  QECEKALRDIDQALIAAVDDTQEVRGLIRVNCVGGYIGEDIIAKYVNEFMLEYPNITVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID+  D  D AIR+ + ++ +  + RKL+ I M   A+P+YLK   EP++ +EL
Sbjct: 130 DFSSPRIDLIEDQFDVAIRMGE-LEDTGFVARKLMMIDMVTLASPNYLKTHGEPVTPKEL 188

Query: 187 DKHNLIT 193
            KH  +T
Sbjct: 189 AKHRTLT 195


>gi|78063199|ref|YP_373107.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971084|gb|ABB12463.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 303

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 126/292 (43%), Gaps = 15/292 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G +    
Sbjct: 14  AFEAAVRHASFTRAATELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY--- 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL--LQGNLKEFLLLYPDIQIQLI 127
            +E  H+L T   E     +KP G L +      G  L  L   L EF   YPDI+++LI
Sbjct: 71  -AEQVHRLLTQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPEFRAAYPDIKLRLI 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +    +S    D  +   +    +    R+L    +    AP YL      L   +L 
Sbjct: 130 VRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAADLA 187

Query: 188 KHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
              L+   D   + M    W     +DR   +P+   + +NSY  I+Q  +LG GI+L  
Sbjct: 188 NETLLRLEDGQRQWMSWSEWFDQNDIDRQKAQPQD--ITINSYPQIVQMTILGQGISLGW 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            Y++    +   LVR+ +   +     Y   P         + F  ++F +A
Sbjct: 246 RYMIDACIEAGLLVRVTDASASHGGGYYVISPNDRAQNHAARLFTRWLFEQA 297


>gi|171319617|ref|ZP_02908712.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095149|gb|EDT40153.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 310

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 139/288 (48%), Gaps = 11/288 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V   G+F  A+E + ++   +SR I+ LE ++ I+LF R  R ++LTE+G + +  
Sbjct: 14  VFAAVVDMGTFAAASEVIGMTPPGVSRAIARLEKKLNIRLFNRTTRSVSLTEEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE        S+    GKLR+     + + +L   L  F+  +P+++I+LI  
Sbjct: 74  VMPHLAGLEEAAAAAAGSASAVRGKLRVNLDPVVYRTILGQQLDAFMDAHPELEIELIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187
           +   D+ MD  D A+R  +P ++S+LI RKL+   +   A+P Y+     P   ++L+  
Sbjct: 134 DSLGDLVMDGFDIAVRFGEP-RASTLIARKLLDTGIVTVASPSYVARRGRPAKPEDLESR 192

Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242
            H  I F +  P+  + F W       R + + R   L VN   +++  C+ GSGIA   
Sbjct: 193 SHRCIEFRN--PETGKPFAWEFHRRRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LL    +  N  L+ +  +     F +Y  YP       K +AF +F+
Sbjct: 250 LLGAEPLIANGQLINLFPEWADERFPLYAYYPSRHHLPAKTRAFLDFV 297


>gi|28898782|ref|NP_798387.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364144|ref|ZP_05776850.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260877227|ref|ZP_05889582.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260897827|ref|ZP_05906323.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|28807001|dbj|BAC60271.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308087631|gb|EFO37326.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308090284|gb|EFO39979.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308115202|gb|EFO52742.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 298

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 103/187 (55%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT  G + +
Sbjct: 10  IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTHAGERFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++   I   + + +  G +R+      +G++++   + EF+  YP++ I L
Sbjct: 70  HDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYPNVSIDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID+  D  D A R+ + +  +  + RKL+T+ M   A+P Y++    P+  +EL
Sbjct: 130 DFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMPIHPKEL 188

Query: 187 DKHNLIT 193
            +H  +T
Sbjct: 189 AEHRTLT 195


>gi|90426052|ref|YP_534422.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108066|gb|ABD90103.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 315

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F      GSF+ AA +L +  S+ISR I+ LE+++G  L  R  R L LTE G+   
Sbjct: 7   MRAFIRTVELGSFSLAATELDVKVSTISRHITALESDLGAALLNRSTRRLHLTEAGTLFF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++   +E  +      +  P G LRI+     G+  +  ++K+F+  YP+I+I   
Sbjct: 67  DRATQILLAVEEARAATASLNESPRGVLRISMPTAFGRLHVMPHIKDFVAEYPEIRIAAT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186
           L +  +D+     D A+R+   +  SSL+ R+L +      A+P +L+ C EP+S  +++
Sbjct: 127 LTDATVDLIETGDDVAVRI-GSLTDSSLVARRLASHRRILVASPGFLRQC-EPISRPRDV 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +   + F      C        +   P+       ++ N   ++    + G GIALLP 
Sbjct: 185 ARQQCLIFTLQSGDCWYARRSDDSSTEPLQIAVSGNMRANDSEALQGAALAGLGIALLPS 244

Query: 247 YIVKDNPNLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V D+    R++  +          P   ++  YP     + K+++F +F+
Sbjct: 245 WLVGDDLRAGRLVVPLAGWDWFAARGPEPAIWGVYPPKKIVSPKVRSFIDFL 296


>gi|313647629|gb|EFS12079.1| uncharacterized HTH-type transcriptional regulator yhjC [Shigella
           flexneri 2a str. 2457T]
 gi|332750051|gb|EGJ80463.1| hypothetical protein SFK671_4706 [Shigella flexneri K-671]
 gi|332750207|gb|EGJ80618.1| hypothetical protein SF434370_4270 [Shigella flexneri 4343-70]
 gi|332751279|gb|EGJ81682.1| hypothetical protein SF274771_4726 [Shigella flexneri 2747-71]
 gi|332763476|gb|EGJ93715.1| putative transcriptional regulator LYSR-type [Shigella flexneri
           2930-71]
 gi|332996216|gb|EGK15843.1| hypothetical protein SFVA6_4878 [Shigella flexneri VA-6]
 gi|332996918|gb|EGK16537.1| hypothetical protein SFK272_4797 [Shigella flexneri K-272]
 gi|332997076|gb|EGK16692.1| hypothetical protein SFK218_5164 [Shigella flexneri K-218]
 gi|333012504|gb|EGK31885.1| hypothetical protein SFK304_4953 [Shigella flexneri K-304]
 gi|333013395|gb|EGK32767.1| hypothetical protein SFK227_4724 [Shigella flexneri K-227]
          Length = 299

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + +NLL   L EFL  +P I+++L 
Sbjct: 67  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             N+ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHNRPVDILHDGFDCVIRT-GALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|163740220|ref|ZP_02147614.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161386078|gb|EDQ10453.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 317

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 141/288 (48%), Gaps = 11/288 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L VF  +A++GS T AA+++ L +S++SR++S LE  +G++L  R+ R   LT  G
Sbjct: 24  DLNDLAVFAAIAQAGSITGAAKKMKLPKSNVSRRLSRLEDRLGVQLIERNTRSSRLTSIG 83

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  +       ++ S  +P+G+LR++ ++ +GQ ++   +  +   +P +Q
Sbjct: 84  IRYADYCRLMVEEANAADAVVETSLGEPAGELRVSASVLVGQQIIAPAIAAYGQQFPKVQ 143

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L L N   ++  D  D A R+  KP   SS++ + + T     YA+P YL++   P  
Sbjct: 144 VILELTNMRANLIEDGFDLAFRIGEKP--DSSMMSQAIGTFPFGLYASPGYLRSSGNPQL 201

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
            ++L  H  +    ++    +   W    D  + +   +  + VN +L++    + G GI
Sbjct: 202 PRDLQHHRCL----IMRSGFKTSRWKLQRDGEVIDFAANGDVVVNDFLTLRNLAIAGGGI 257

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A+LP Y V     +  L  ++ +    S  +   YP     T K +AF
Sbjct: 258 AMLPAYAVHAECASSLLSAVLPNWSASSVPLSAIYPSRRGATLKQRAF 305


>gi|121594366|ref|YP_986262.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120606446|gb|ABM42186.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 303

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 24/298 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +AR+G+   AA +  +  ++++R+I  LE ++G  LF R A G  LTE 
Sbjct: 1   MDWDNLRYFLELARTGTLAGAARRTGVEHTTVARRIQALEKQMGAPLFAREAAGHRLTET 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESS------VKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           G  L          +E   + ++ +S        PSG +R+  T   G  +L  +L    
Sbjct: 61  GRHL----LPAVEAMEAAVLGVERASPANSPGAGPSGLVRVGATEGFGTVVLAPHLARLT 116

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P + I L+   + + +S   AD  I L +P +  S+I  KL    +  Y    YL  
Sbjct: 117 QKHPHLSIDLLALPRMLHLSRREADIVISLERP-KRGSVIVTKLADYTLRLYGQREYL-- 173

Query: 177 CREPLSI--QELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
            R PL    ++L  H  I++ D  L  K ++  + L   +R         L+  S  +  
Sbjct: 174 ARRPLVAKREDLRHHAFISYVDDLLFTKELQFIDQLYPPER-------FALRSTSITAQY 226

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    G+G+A+LP ++   +P L R++      + T +   P   K+  +++A   F+
Sbjct: 227 EAVRAGAGLAVLPAFLADRDPVLARVLPHEAEFTRTFWMSMPAESKHLARMQAVWAFL 284


>gi|49083088|gb|AAT50944.1| PA1138 [synthetic construct]
          Length = 292

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 139/289 (48%), Gaps = 18/289 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA  LH+ Q+++ R+++ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDTRVFLALCREHTLRGAARALHVDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G        E+  K+E + +EL   +     + SG++R++TT  L  + +   L    L 
Sbjct: 61  GE----AAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLE 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +PDI++ L   +  +D+     D AIR  +P ++  LI RKL +  M  +A+  YL+   
Sbjct: 117 HPDIRVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNG 175

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P+  +    H+L+ +        E    L     PI + R+  + VNS + + Q    G
Sbjct: 176 VPVPGERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARG 230

Query: 239 SGIALLPDYIVKDNPNLVRI--MEDVITPSFTVYFCYPEALKNTGKLKA 285
            G+  LP Y+  +   LVR+    +   P + V+    + L++T +++A
Sbjct: 231 LGLCELPLYM-GERDGLVRVWPQRERRRP-YEVWMVTHKDLRHTARVRA 277


>gi|253991250|ref|YP_003042606.1| lysr-family transcriptional regulator [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638298|emb|CAR66921.1| lysr-family transcriptional regulator [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782700|emb|CAQ85865.1| lysr-family transcriptional regulator [Photorhabdus asymbiotica]
          Length = 321

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 126/250 (50%), Gaps = 11/250 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  WD +R+F  VAR+G+ + AA  L +  +++SR++  LE   G+ LF RH  G  LTE
Sbjct: 21  SLVWDDIRIFLAVARTGTISRAANLLKIGVATVSRRVERLEATFGMPLFLRHQAGYQLTE 80

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L      +     T  +E  ++ ++ SGK+RIATT  L  +L+  +L      YPD
Sbjct: 81  DGTELLEKAKNMEMAANTLLLE-ADTRMEISGKVRIATTETLANSLIIPSLPSLRKNYPD 139

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++I D   +++    AD A+R+ +P +    I R+L  +    Y +  YL       
Sbjct: 140 LTLEIITDIHTVNLHRRDADLALRIIRPERGHVTI-RQLGILGFGLYGSEDYLATHSSGA 198

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              E +  N I + D   +    F W+  +   RP+    ++   +++ +S ++    G 
Sbjct: 199 LRGEYENDNFIGWTDDQSQLFT-FKWVEQILKGRPLS---VATTSLSAQISAVKA---GL 251

Query: 240 GIALLPDYIV 249
           G+A+LP ++ 
Sbjct: 252 GLAVLPHFVA 261


>gi|28901352|ref|NP_801007.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835957|ref|ZP_01988624.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260362908|ref|ZP_05775777.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260880195|ref|ZP_05892550.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260895312|ref|ZP_05903808.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260901137|ref|ZP_05909532.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28809899|dbj|BAC62840.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149750711|gb|EDM61456.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308085644|gb|EFO35339.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092481|gb|EFO42176.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308109354|gb|EFO46894.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308112024|gb|EFO49564.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 299

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 8/283 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  +L+ S +S++++ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVIELGSFSKVAEANNLTNSVVSKRMARLEEEIGAQLLYRTTRKLTLTEAGKV 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+  D  D  IR    ++ SSLI R ++       A+P Y+    +P+   +
Sbjct: 124 MSLDNRFVDLVADGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPIEPID 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   W    D      R+S C   ++  ++ +  + G GIA +
Sbjct: 183 LTSHNCLQYAYQTTGASE---WEFKSDEGNYIVRVSGCFSTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           P  +V     N  LV I  +++     +Y  YP   +   K+K
Sbjct: 240 PRCLVYHDIRNGQLVDIFPELVGKKLGIYAVYPFTRQPPNKVK 282


>gi|253990736|ref|YP_003042092.1| transcriptional regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782186|emb|CAQ85350.1| Transcriptional regulator [Photorhabdus asymbiotica]
          Length = 301

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 144/295 (48%), Gaps = 14/295 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR   VF  V   GSF  AA+ L LS++++S+ I+ LE  +   L  R  R + +T  
Sbjct: 5   DKLRAISVFRRVVELGSFKAAAQDLGLSKAAVSKNINQLEEYLKSPLINRTTRNMHITAN 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  +LE   + + E+S   +G ++++  + +G   L   + +F+  +P I
Sbjct: 65  GRNYYHQVCNILDELENADLSVMETSHTLTGSIKVSIPMSMGLKALNPLICQFMHTHPSI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++++ +K ID+     D AIR    +  SSL  RKL+ +     A+P Y++   + L 
Sbjct: 125 SVEVVMIDKYIDLIEHGIDVAIRGGGELSDSSLRSRKLIKVPRVLCASPAYIEASEKILI 184

Query: 183 IQELDKHNLITFG-DLIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            + L  HN + +     P+     + N +  VD   G        VN+ L++ Q  + G 
Sbjct: 185 PENLTSHNCLVYSLSSSPRRWIFHNQNDVKVVDLKPG-----TYVVNNGLALKQAALSGH 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+ LLP+ +V D   +  LVR++ +       +Y   P   +++ K +AF +F+ 
Sbjct: 240 GVILLPELLVTDELLSGKLVRLLPEWEADMQALYAIQPFHKEHSNKTRAFIDFLI 294


>gi|254473562|ref|ZP_05086958.1| transcriptional regulator [Pseudovibrio sp. JE062]
 gi|211957274|gb|EEA92478.1| transcriptional regulator [Pseudovibrio sp. JE062]
          Length = 305

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 17/292 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           ++ ++LR F  V  SGSFT AA +L L ++ +S Q++ LE E+G  L  R  R L +TE 
Sbjct: 4   YNLNRLRHFVEVVESGSFTAAARKLGLGKAIVSHQVAKLEEELGAALLVRTTRSLQVTEA 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +   +E+  + E    ELQ+    PSG L +    D G+ ++   L      +P I
Sbjct: 64  GQRFYESAAEILEQAERAAQELQQEQDVPSGLLTVTAPEDYGRYVVAKALMRLRKKHPKI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP---HYLKNCRE 179
           Q+  +  ++ +D   +  D +IR+   ++ SS I RK+ T   +  A+P     L     
Sbjct: 124 QVNAVFTDEKLDQLKEKIDVSIRV-GWLEDSSAIARKIGTFQQYTVASPSVVEALGPVET 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY-CVLG 238
           PL +Q         +   +P  M    W +  D       +   +V  + ++  + C LG
Sbjct: 183 PLDLQ----GKPWIYHRKLPSEM---TWRSE-DEEEACFTLQAPEVTVWNTLTSHACALG 234

Query: 239 -SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             GI +LP + ++D+     L RI+ +       +Y  +P +     K KAF
Sbjct: 235 DGGICILPSFQIRDDLAAGRLQRILPNWHQKEGGIYALFPNSRFRPAKTKAF 286


>gi|37525157|ref|NP_928501.1| hypothetical protein plu1189 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784583|emb|CAE13483.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 304

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 142/297 (47%), Gaps = 13/297 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF ++   GS   A+E+L +S++ +SR ++ +E   G++L +R  R ++LT  G   ++
Sbjct: 8   QVFTIIVEQGSMIAASERLDMSRAMVSRYLAEMEKWAGVRLLHRTTRKISLTSAGEIAYQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            + ++    E   +     + + SG LRI+++  L  + L   + EF+ +YP I I + +
Sbjct: 68  RSRKLLQLSEEIPVHQPVEAQELSGLLRISSSQSLAVSALSVAIPEFMQIYPQIAIDMQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            NK I++  +  D A+R+   ++  +LI R L T H    AAP YL     P    +L  
Sbjct: 128 SNKAINLVEERIDLALRITNNLE-PNLIARPLSTCHSVVCAAPCYLAGKMLPQKPADLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           HN +T+ +   K +    WL          P    L  N  + +M+  + G+GIA+ P Y
Sbjct: 187 HNCMTY-NFFGKSL----WLFEHRGEKYSVPVSGTLSANESMVLMEATLQGAGIAMQPYY 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298
            V     +  L++++ +    +  +Y  Y         L+A  +F+   F  +  W+
Sbjct: 242 SVASHLASGKLIQLLPEYRPQAMGIYGIYASRQNMPATLRALLDFLVQWFASSPYWQ 298


>gi|296314843|ref|ZP_06864784.1| transcriptional regulator, LysR family [Neisseria polysaccharea
           ATCC 43768]
 gi|296838343|gb|EFH22281.1| transcriptional regulator, LysR family [Neisseria polysaccharea
           ATCC 43768]
          Length = 303

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 99/181 (54%), Gaps = 1/181 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    +L+   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSLICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L     P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLIRNGVPKTPEEVT 185

Query: 188 K 188
           +
Sbjct: 186 R 186


>gi|281180559|dbj|BAI56889.1| putative transcriptional regulator [Escherichia coli SE15]
          Length = 323

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+        S L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGSMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|148260442|ref|YP_001234569.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326403636|ref|YP_004283718.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|146402123|gb|ABQ30650.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
 gi|325050498|dbj|BAJ80836.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 322

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 136/299 (45%), Gaps = 19/299 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +AR G+ + AA +L + QS++ R+++ LE   G++L  R  RG  LT  
Sbjct: 1   MDWDDLRSFLAIAREGTLSAAARRLGVRQSTMGRRLAALEARAGVRLLERTPRGFRLTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G       +EV  ++ET  +  + +     V+  G +R+ T  D   ++L   L +    
Sbjct: 61  GEAAR---AEV-ERMETAALAAERAVSGRDVRLEGTVRLTTVSDFAPSVLMPALADLADR 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP I ++LI D++ + ++   AD A+RL +P +  SL  R++ T+    YA+  YL    
Sbjct: 117 YPGIVVELIADDRTLSLAAREADLALRLARP-RGQSLRGRRIGTVSFGLYASETYLAARS 175

Query: 179 EPL-SIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            P     + + H LI   D      E D                  L+ +S +S +    
Sbjct: 176 VPAWPGSQGEGHRLILSRDETGAYPELDALAAMAPK------AAVALRTDSRVSQLAAAR 229

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G GIA+L  ++      L RI    + P   ++    E  ++  +++A  + +  + R
Sbjct: 230 AGLGIAVLGHHVAA-GAGLTRIDSPPL-PEREIWLVQHEDTRDVPRIRAVADALAARMR 286


>gi|90412929|ref|ZP_01220928.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90326108|gb|EAS42542.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 303

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 21/264 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF +V   GS+T AA++L ++ S++S+QIS LE  + +KL  R  R L ++E G+K++
Sbjct: 13  LAVFIIVVDEGSYTAAAKKLGVTPSALSKQISRLEKALSVKLLERTTRKLMISESGTKIY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +V        +E+  S    PSG L +A        +LQ  +  FL  YPDIQ++L
Sbjct: 73  E-QCKVMTNAAKQAVEIASSEHTIPSGTLTVAAPKAFLSIVLQPLVTPFLTQYPDIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +IDI  +  D   RL +   S +L+ +K+  +++   A+P YL    EP    +L
Sbjct: 132 KASDGEIDILSEGIDIVFRLTEH-PSEALVNKKIGKVNLALCASPEYLALRGEPQLPSDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSG 240
            +H+ I  G+     + DF         I +     + V    ++      ++  + G G
Sbjct: 191 RQHDCIYLGETTTDHIWDF---------IKDDEFQSVSVTGRYAVNHSQMRLKGVIDGLG 241

Query: 241 IALLPDYIVK---DNPNLVRIMED 261
           I + PD+++K   +N ++  +++D
Sbjct: 242 IGIFPDFVIKQALENGSVKEVLKD 265


>gi|241764119|ref|ZP_04762155.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241366525|gb|EER61018.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 298

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 126/274 (45%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  V R GSFT AA  L +SQS++S  + GLE  +G++L  R  R +  TE G
Sbjct: 5   NFNDLIAFVTVTREGSFTKAAAVLGVSQSALSHTMRGLEERLGVRLLTRTTRSIAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + +++     + E   KP+G +RI+        +L   L + L  YPDI+
Sbjct: 65  ERLFQSIAPRFEEIDAELTAVSEFRDKPAGAIRISAAEHAAITVLYPKLSKVLPDYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            ++ +D    DI     D  +RL   +    +  R    + M    +P Y     +P + 
Sbjct: 125 AEINIDYALTDIVAQRYDAGVRLGDQVAKDMIAVRIGPDLRMAVVGSPAYFSARNQPRNP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
            +L  HN I     +P     + W  +  R     R+    V NS   +++  + G G+A
Sbjct: 185 HDLADHNCIN--RRLPTYGGIYAWELSNGRQELNVRVEGQWVFNSSSPVLRAALDGCGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
            LP+ +V ++     L+R+++    P F  Y  Y
Sbjct: 243 FLPEDMVLEHIAAGRLIRVLDAWCQP-FPGYHLY 275


>gi|116253518|ref|YP_769356.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258166|emb|CAK09267.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 303

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 134/287 (46%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G+FT AA+ L + +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++  +LE     L  S   PSG+LR+         ++   L +F   YPDI+I L 
Sbjct: 67  ERAAQIISELEELDGSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPDIRIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D   +  DCA+R   P    SLI R++  + M   A+P Y++    P   ++L+
Sbjct: 127 VGDRTVDYLAENVDCALRAGTP-ADQSLIARRVSEVEMITCASPDYIQKFGMPERPEDLE 185

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + +          F +    +     PR     VN   + +   + G GIA +P 
Sbjct: 186 ADHYSVNYFRAQNNRTLPFEFRRHNEVIETSPRY-IASVNDSRTYLTAALTGLGIAQVPI 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ ++      LVR++ D       +Y  YP     + K++ F +++
Sbjct: 245 FMAREPMARGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWL 291


>gi|167577310|ref|ZP_02370184.1| LysR-family transcriptional regulator [Burkholderia thailandensis
           TXDOH]
          Length = 306

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 5   DRFDVFRAVVEAGSFTGAANVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVELTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + E    + +       G LR+ +T++    ++   L+EF+ ++P ++++
Sbjct: 65  FYARCLRVLAEAEEAIDDARGEHGGMQGSLRVTSTVEYALAVVAPALREFMSMHPALRVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L       D+  D  D AIRL +       P +   +    +  +   A  A H +    
Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRFEQFQDLPFRGVCIDTYDVRPVASPALLAAHGVARIE 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++  L +        +    + D +    V RP  +P    L  ++   +  +   G
Sbjct: 185 SPDALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLRAFARQG 241

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           SG+ALLP+++V+   DN  LV  + D       VY  YP       K++A+ +FI
Sbjct: 242 SGVALLPEWLVRDDLDNGTLVDALPDYRFAQQGVYALYPSTRHVPQKIRAWVDFI 296


>gi|126726824|ref|ZP_01742663.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126703782|gb|EBA02876.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 303

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 6/290 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   GS + A   L +S +  S +IS LE  + ++LF R  R LT TEQG  
Sbjct: 5   DNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEEHLSVRLFQRTTRSLTPTEQGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+   ++  + ++   +  P G L +A  + +G+ L+  ++  FL  YP++ I+
Sbjct: 65  FYGGACEILDSVDNAEAQIVNITDNPKGSLYVAAPLGVGRRLIAPHVPAFLDQYPEVTIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D AI L +P+ S+  I RK+  I     A+P Y+     P +   
Sbjct: 125 LRLTDRKVDLTTEGLDLAIFLGQPVDSNLRI-RKIADIERVLCASPSYIARNGNPETGDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L   N        P   E F W       +   R+S   + +    +  + + G GIAL 
Sbjct: 184 LVAGNHECLNLRFPGAPE-FQWPLMTSEGVKRFRVSGRYESDDGDVLTDWALGGHGIALK 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P + V D   + +LV++ +        +   Y        K + F +F+ 
Sbjct: 243 PIFEVADHLKSGDLVKVAKGTPPEPIQMACLYTHKRGQDPKTRMFMDFMI 292


>gi|331649342|ref|ZP_08350428.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M605]
 gi|331041840|gb|EGI13984.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M605]
          Length = 323

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+        S L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGSMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|295097732|emb|CBK86822.1| Transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 308

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEQGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L     E L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAAMTAEMLKEYPGLTVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L ++ M   A+  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVVCASKSYLAQYGVPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +        E         + + E R      N  ++I ++ V G+GIA +P
Sbjct: 185 SNHSWLEYSVRPDNEFELIAPEGLSTKLLPEGRFV---TNDPMTISRWLVAGAGIAYVP 240


>gi|152997682|ref|YP_001342517.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150838606|gb|ABR72582.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 290

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 17/289 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V R G F+ AA +L +S S ISR I+ LE E+G  L +R  R + L+E G   +
Sbjct: 1   MEAFVEVVRQGGFSAAAIKLSVSASHISRLITQLEAELGTTLLFRTTRRIRLSEAGELYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   L + +  +   +  P G  ++      G+  +   + +FLL +P I++   
Sbjct: 61  QHCRGLPEALSSAEEVISSLNQAPIGAFKMTCATTFGERYIAPLMNDFLLNHPKIELDFH 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D AIR+   ++ SS + R+L     +  A+  Y+     P ++ EL+
Sbjct: 121 LTNRSVDLIEEGYDLAIRM-GAMKDSSHLSRRLCDRVEYLCASRDYIDQHGMPHTLAELN 179

Query: 188 KHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           KH          +C+     +WL   D    E ++S   + NS  +++     G GIA L
Sbjct: 180 KH----------RCLIGSKNHWLFQQDGQRKEAKVSSNWRSNSGPALLDAVRKGLGIAQL 229

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V D+     L+ ++     P   V+  YP+  + + KL++  +++
Sbjct: 230 PDYYVADDLASGKLIPLLTQYQYPYSGVWLVYPKVRQPSPKLQSICDYL 278


>gi|51597721|ref|YP_071912.1| LysR family regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186896905|ref|YP_001874017.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|51591003|emb|CAH22662.1| LysR-family regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186699931|gb|ACC90560.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
          Length = 318

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSFT AA+ L L ++ +S+++S LE  +G++L  R  R L LTE G    
Sbjct: 7   MTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +  L+  SV+P GKLRI   + + + ++  +L EF   YP+I ++L 
Sbjct: 67  AKCQVILQEIDELEGALKGGSVEPRGKLRIEALVSVARWVIAPSLHEFQARYPNISVRLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++   +  +  DCAIR    ++ SS I R +  +H+  YAAP YL+         EL 
Sbjct: 127 GSDRISHLLDNGIDCAIR-GGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTHPHELS 185

Query: 188 KHNLITF--GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H  I++  G   P     F W L +       P    L  +     +  C+ GSGI   
Sbjct: 186 VHRRISWFTGQRNP-----FIWSLQSTSDAFELPAEEGLLFDDPDVALASCMAGSGICPG 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             + V+       LV ++      +  ++  YP     + +++ F ++
Sbjct: 241 APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDW 288


>gi|54308917|ref|YP_129937.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913347|emb|CAG20135.1| putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 310

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 21/264 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF +V   GS+T AA++L ++ S++S+QIS LE  + +KL  R  R L ++E G+K++
Sbjct: 20  LAVFIIVVDEGSYTAAAKKLGVTPSALSKQISRLEKALSVKLLERTTRKLMISESGTKIY 79

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +V        +E+  S    PSG L +A        +LQ  +  FL  YPDIQ++L
Sbjct: 80  E-QCKVMTNAAKQAVEIASSEHTIPSGTLTVAAPKAFLSIVLQPLVTPFLTQYPDIQLKL 138

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +IDI  +  D   RL +   S +L+ +K+  +++   A+P YL    EP    +L
Sbjct: 139 KASDGEIDILSEGIDIVFRLTEH-PSEALVNKKIGKVNLALCASPEYLALRGEPQIPTDL 197

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSG 240
            +H+ I  G+     + DF         I +     + V    ++      ++  + G G
Sbjct: 198 RQHDCIYLGETTTDHIWDF---------IKDEEFQSVSVTGRYAVNHSQMRLKGVIDGLG 248

Query: 241 IALLPDYIVK---DNPNLVRIMED 261
           I + PD+++K   +N ++  +++D
Sbjct: 249 IGIFPDFVIKQALENGSVKEVLKD 272


>gi|209550674|ref|YP_002282591.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536430|gb|ACI56365.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 303

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G+FT AA+ L + +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++  +LE     L  S   PSG+LR+         ++   L +F   YPDI+I L 
Sbjct: 67  ERAAQIISELEELDGSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPDIRIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D   +  DCA+R   P    SLI R++  + M   A+P+Y++    P   ++L+
Sbjct: 127 VGDRTVDYLAENVDCALRGGTP-ADQSLIARRVSEVEMITCASPNYIQKFGMPERPEDLE 185

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + +          F +    +     PR     VN   + +   + G GIA +P 
Sbjct: 186 ADHYSVNYFRAQNNRTLPFEFRRHNEVIETSPRY-IASVNDSRTYLTAALTGLGIAQVPI 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ ++      LVR++ D       +Y  YP     + K++ F +++
Sbjct: 245 FMAREPMAKGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWL 291


>gi|330960963|gb|EGH61223.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 305

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 136/290 (46%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AA+ LHL ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFAKAADSLHLPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +        +P G LRI   + LG+ ++   L EF   YP I +
Sbjct: 64  AYYQRCVSLLADLDDAEAAFSAKGAEPKGLLRIDLPVSLGRMVVIPALPEFTRRYPQISL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL     PL +Q
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DDTLVARPLGSLTQITCASRDYLDRYGTPLDLQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +H +I +        + +      D   G+  ++C + VNS    +  C  G G+  
Sbjct: 183 DLAQHQVIEY--FSASTSKRYGLEFMTDGWGGDHGMTCSVSVNSADGYVAACEAGFGLVQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y +     +  LV ++ +   P+  +   YP   + + +++ F +++
Sbjct: 241 VPRYHIATQLRSGALVEVLREYRPPALPLTALYPPHRQLSRRVRVFVDWL 290


>gi|311695653|gb|ADP98526.1| transcriptional regulator, LysR family protein [marine bacterium
           HP15]
          Length = 300

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 121/263 (46%), Gaps = 6/263 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW++ R F V A  GS + AA+ L +SQ ++ RQ++ LE E+   LF R  RGL LT
Sbjct: 6   VNFDWNRARAFLVTAEEGSLSAAAKALGVSQPTLGRQVAALEEELSTALFERGGRGLELT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L      +     +  +     +    G++ I+ +      +L   L+     YP
Sbjct: 66  RNGLELLAYVRAMGEAASSLSLAATGQAKSIEGEIAISASEITAAYILPPILQRLRYQYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I L+  N+  D+    AD AIR  +P +   LI RK+       YA P  L +   P
Sbjct: 126 GIRINLVASNEASDLRRRAADIAIRNFRPTE-PDLIARKVGEFSATLYARPEILADLPSP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+ ++L K   I F   +         LA     + E +    + +S+L   Q    G G
Sbjct: 185 LT-EDLCKAPFIGF---LSNNERYVGALAQRGLKLREDQF-VARTDSHLVHWQMARTGIG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVI 263
           I ++P  +    P++ R+ ED +
Sbjct: 240 IGMMPVELGDAEPHVERVFEDKV 262


>gi|296115624|ref|ZP_06834251.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769]
 gi|295977873|gb|EFG84624.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769]
          Length = 304

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 132/304 (43%), Gaps = 26/304 (8%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  +  +GSF  A+E++ +S    S+ +S LE+E+G++L  R  R L+ TE G   + 
Sbjct: 9   RLFVAILETGSFVAASERIGVSSGQASKMLSRLESELGVQLIQRTTRALSPTEIGQAYYE 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  + +     ++  S  PSG+LRI   +  G   L   L  F   Y  I++ +  
Sbjct: 69  RIKVILAQRDDLDASIRNISGTPSGRLRITAPMSFGNIQLMPALLAFADRYSSIRLDVSF 128

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +   D+  D  D A+R+ + +  SSLI R+L    +   A+P YL     P    EL +
Sbjct: 129 SDHLADLVEDGFDLAVRIGR-LSDSSLIARRLCDTRIVTVASPGYLAIHGVPTHPDELSR 187

Query: 189 HNLITFGDLIPKCMEDFNWLA---------TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           H           C+ D N+           T  +P+  P    +  ++  + M     G 
Sbjct: 188 H----------ACIIDTNFRTPNIWSFCNPTSRQPMSVPISGRIAFSNGEACMTAAERGL 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLK 293
           GIA LP +I         LV ++ D   P+  V+  YP A     K++   +F+   F  
Sbjct: 238 GIACLPSFIAGPGIYKGTLVTLLRDAEPPALGVHALYPSARHLALKVRVLSDFLADHFKG 297

Query: 294 ARDW 297
             +W
Sbjct: 298 KAEW 301


>gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
          Length = 287

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 19/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  + SFT A  +L +S++ +S+ +  LE  +G +L  R  R L+LTE G   +
Sbjct: 1   MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++  +    +S+  P G L++A  +  G   +   L E++  YP++++ + 
Sbjct: 61  ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  D  D AIR+   +  S LI RKL T  +   A+P YL+    P + ++L 
Sbjct: 121 LADRRVDLIEDGYDLAIRVGN-LPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLK 179

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           +H  + +     GD          W+    +     R+   ++ N+   +    + G+G+
Sbjct: 180 QHACLNYSYSSSGD---------EWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGL 230

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P +IV D+     LV +M+D       +Y  YP     + K++ F +++
Sbjct: 231 IWQPHFIVADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYL 282


>gi|197295020|ref|YP_002153561.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195944499|emb|CAR57101.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 302

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 127/274 (46%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L  F  VAR  +FT AA QL +SQS++SR +  LE  +GI L  R  R ++ TE G
Sbjct: 3   DFNDLAAFMTVARERNFTRAAAQLGVSQSALSRTVRALEGRMGIPLLTRTTRSVSPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  + ++E     L+  + +P+G +RI  T       +   L+  L  YP ++
Sbjct: 63  QRLLESIAPRFQEIEVELESLRAMTDQPAGNVRITATDYAANEYVWPRLQPLLRRYPALK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ D    D+     D  IRL   +    + QR    + M    +P YL +     + 
Sbjct: 123 VELVNDYGLTDLVAGRYDIGIRLGDQVAKDMIAQRIAPDMTMSIIGSPDYLASRPATKTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L +HN I     +P      +W  +  R   + R+   L  N+   ++   + G G+A
Sbjct: 183 QDLTQHNCINL--RLPTRNALLSWELSKGRRELQVRVEGQLTFNNVYQMVDAALAGFGLA 240

Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273
            +P  +V  +    R   ++ED   P+F  +  Y
Sbjct: 241 YVPKDLVAHHVEAGRLGWVLEDWF-PTFVGHHVY 273


>gi|116249016|ref|YP_764857.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253666|emb|CAK12059.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 313

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 140/284 (49%), Gaps = 16/284 (5%)

Query: 19  SFTHAAEQLH---------LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F HAAEQ           +S S+I + ++ LE  +G++LF R  R ++LTE+G+ L+  
Sbjct: 9   AFVHAAEQQSYVAAARVGGVSPSAIGKAVARLEGRLGVRLFNRTTRSISLTEEGAVLYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   ++  +  +  S  +P G+LR++    +G +LL   L  F   +P+I++ +  +
Sbjct: 69  YKRIIDDMDDAEATISRSRERPRGRLRVSVPHIVGHHLLMPILPIFAEQFPEIELDIDFE 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +K  D+  +  D  +R  + +  + LI R+L   H     +P YLK    P +  +L +H
Sbjct: 129 DKVTDLVAEGLDVVVRSGE-LADARLIARRLGDQHFVVCGSPDYLKRHGRPETPDDLSQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I F       +  + + +  DR I  PR   L  N+  + ++    G GIA LP Y+ 
Sbjct: 188 ACIHFKYPSSGRLAPWAFRSPYDRVI-FPR--TLTFNNTDAGLRAARDGLGIAHLPVYVA 244

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +    +LV ++   + P  ++   +P   + + K++AF +F+
Sbjct: 245 EPHMRTGSLVPVLTSFMVPYGSLSLVWPSNRQLSPKVRAFVDFV 288


>gi|110680186|ref|YP_683193.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109456302|gb|ABG32507.1| transcriptional regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 298

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 9/287 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +WD LR+F  VAR  S + A ++L L  +++ R+I  LE  +   LF +  +G  L+
Sbjct: 1   MQTNWDDLRIFLAVARDNSLSGAGKRLRLDPATVGRRIQKLEAALQTVLFTKSPQGYALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L     +    +      LQE S + SG++RI         LL       L   P
Sbjct: 61  ETGQALLVRAEQAETAMRAAVAVLQEQSDRLSGQIRIGAPDGAANYLLPQVCAAILKENP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++IQ++   +  ++S   AD AI +  P  +  LI +K+    +H   +  Y+++    
Sbjct: 121 DLEIQIVALPRVFNLSRREADMAIAVSAPT-AGRLIVQKITDYKLHLAVSRDYIRDNGAI 179

Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            S+ +L +HN++ +  D+I     + ++L      IG  ++  L  NS    +     G 
Sbjct: 180 RSVADLARHNVVGYIADMIFD--RELDYL----EEIGLTKVP-LASNSVSVQLNLIRQGG 232

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+ ++ D+ +   P + RI+ D ++ +   Y    E  +   +L+ F
Sbjct: 233 GVGVVHDFALSAAPEVARILTDEVSLTRVFYLIRHEDDRRNARLRRF 279


>gi|83747356|ref|ZP_00944396.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207739636|ref|YP_002258029.1| hypothetical protein RSIPO_04337 [Ralstonia solanacearum IPO1609]
 gi|83725943|gb|EAP73081.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206593016|emb|CAQ59922.1| hypothetical protein RSIPO_04337 [Ralstonia solanacearum IPO1609]
          Length = 301

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 14/252 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   +F  AA  L +S S++S  +  LE  +G++L  R  R ++LTE G +L
Sbjct: 8   ELTAFIAIAEQRTFRAAAGVLGVSPSALSHAMRNLEARLGVRLLNRTTRSVSLTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R        LE    E+     +PSG +RI+ +    + +++  L +FL  YPDI I+ 
Sbjct: 68  LRRVRPAVADLEDALNEVASERNRPSGSIRISASESAARPIVRHVLPDFLAAYPDIHIEC 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D + +DI  D  D  IRL + +    +  R    +   A A+P YL N   P +  +L
Sbjct: 128 VVDTRLVDIVADGFDAGIRLLEDVPRDMIAVRFGPDMRFAAVASPAYLSNHAPPQAPHDL 187

Query: 187 DKHNLITF----GDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +H  I F    G L    +E     A   VD P        L + +    ++  + G G
Sbjct: 188 AQHRCIRFRFESGALYRWDLEHRGKSAHVNVDGP--------LTLGNLNLAVEAALAGIG 239

Query: 241 IALLPDYIVKDN 252
           IA +P+ +V ++
Sbjct: 240 IAWVPENLVAEH 251


>gi|162149613|ref|YP_001604074.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161788190|emb|CAP57795.1| putative transcriptional Regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 300

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 129/289 (44%), Gaps = 9/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F  V  +GSF+ AA  L++ Q ++S+ I+ LE+ + + L  R   GLT TE G 
Sbjct: 4   YQAMATFVRVVETGSFSAAARHLNVGQPAVSKTIAQLESRLQVSLLIRSTHGLTPTEVGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        + +  ++  + +    SG+LR++      +  +   L  FL  +P + +
Sbjct: 64  SFYERARNAIQEADEAELAAKGAGAGLSGRLRVSAATTFARLHVIPKLPHFLAAHPHLDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +ILD++ ID+  +  D ++R+   +  S+ + RK+ T      A P YL    +P S  
Sbjct: 124 DIILDDRMIDLVAEGVDISLRMGM-LSDSTAVARKIATGGRSVLATPAYLARAGKPQSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I +    P         A V   +G      L+V++   +    +   G+ + 
Sbjct: 183 DLANHEAIIYSQQ-PNVWSFTRDGAAVSVSVG----GRLRVSAAEGLRAALLADMGLTIA 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D++     +N  +VR++E    P   ++  +P     T K + F  F+
Sbjct: 238 SDWMFAPELENGAIVRVLEAWSLPPIGLWAVFPAGRMMTAKARRFAAFV 286


>gi|83717658|ref|YP_438933.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167615458|ref|ZP_02384093.1| LysR-family transcriptional regulator [Burkholderia thailandensis
           Bt4]
 gi|257142034|ref|ZP_05590296.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651483|gb|ABC35547.1| LysR-family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 306

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 5   DRFDVFRAVVEAGSFTGAANVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVELTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + E    + +       G LR+ +T++    ++   L+EF+ ++P ++++
Sbjct: 65  FYARCLRVLAEAEEAIDDARGEHGGMQGSLRVTSTVEYALAVVAPALREFMSMHPALRVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L       D+  D  D AIRL +       P +   +    +  +   A  A H +    
Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRFEQFQDLPFRGVCIDTYDVRPVASPALLAAHGVARIE 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++  L +        +    + D +    V RP  +P    L  ++   +  +   G
Sbjct: 185 SPDALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLRAFARQG 241

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           SG+ALLP+++V+   DN  LV  + D       VY  YP       K++A+ +FI
Sbjct: 242 SGVALLPEWLVRDDLDNGTLVDALPDYRFAQQGVYALYPSTRHVPQKIRAWVDFI 296


>gi|330992731|ref|ZP_08316675.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp.
           SXCC-1]
 gi|329760209|gb|EGG76709.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp.
           SXCC-1]
          Length = 302

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 133/286 (46%), Gaps = 12/286 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  +GSFT AA Q+ + Q ++S+ ++GLE ++G +L  R   GLT T+ G +    
Sbjct: 9   VFVRVVETGSFTAAARQMGMGQPAVSKIVAGLEQQLGTQLLLRSTHGLTPTDTGQRYFER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + V           + S    SG+LR+A     G+  +   L  FL  +P +++ + LD
Sbjct: 69  VARVIADANEADTLARNSLADLSGRLRVAAPTTFGRLQIIPRLGRFLSAHPRLEVDIELD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R+  P+  S+++ R+L        A P YL      +S ++L  H
Sbjct: 129 DRRVDLVAEGIDVALRV-GPLHESAVVARRLARGRRSVIATPAYLARGPTLISPKDLTHH 187

Query: 190 NLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             I  T G  + +         +VD  +G    S L++++   +    +   G+ +  D+
Sbjct: 188 QAILYTRGGTLRQTFRRGE--ESVDVTLG----SRLRLSAAEGVRAAVLADLGLTVSADW 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +         +VR + D   P+  ++   P     + + +AF +F+
Sbjct: 242 MFLSELRTQAVVRCLRDWTLPAVDLWALLPAGRLTSARARAFMDFV 287


>gi|312960441|ref|ZP_07774950.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311285326|gb|EFQ63898.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 293

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 142/292 (48%), Gaps = 16/292 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT AAEQL LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRLFCQVMESGSFTAAAEQLGLSKQFVSRRLIQLEDRLGVRLLNRSTRRLDITPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  +P + +
Sbjct: 64  SYYESALRLLGEVEQVEQGIAGQNSEPRGTLRLSAPLSFAMAHLGCLLPLFLQRHPQVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ S+LI R++ +I     A+P YL     P    
Sbjct: 124 EVDLSDRPVDLIGEGYDLVLRI-GTLEDSTLIARRIASIPRVYCASPEYLALRGTPHKPD 182

Query: 185 ELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L +H+ + +G    +  +       L    R         ++VN+   +    + G G+
Sbjct: 183 DLAEHDCLPYGHGRQVQWRFKGKLQALNVSGR---------MRVNNGDLLRDTAIAGLGV 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP +IV D   +  LV I++D    + T+   YP+  +++  ++A  +F+
Sbjct: 234 TYLPTFIVGDALKDGRLVTILDDFAPEALTLSAVYPQHRQSSRPVQALVDFL 285


>gi|207722118|ref|YP_002252556.1| hypothetical protein RSMK02451 [Ralstonia solanacearum MolK2]
 gi|206587292|emb|CAQ17876.1| hypothetical protein RSMK02451 [Ralstonia solanacearum MolK2]
          Length = 297

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 135/305 (44%), Gaps = 30/305 (9%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V  +G+FT AA QL +S   + + +  LET +G +L  R  R  +LT+ 
Sbjct: 2   DKLRGMETFVAVVDTGNFTEAAVQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     V  ++   +  ++    +PSG LR++     G  ++      F   +P +
Sbjct: 62  GRVFYDDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D++ +  D A+R+  P+  + L+ + L    M   A+P YL    +P +
Sbjct: 122 RVELDLSNRMVDLADEGFDLAVRI-GPLGDADLVAKPLCAYRMAICASPDYLARHGQPET 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPI---GEPRISCLQVNSYLSIM 232
             +L  H          +C+    W       L+  D P     +P  SC   N    + 
Sbjct: 181 PADLPAH----------RCLSHMVWNRRNAWQLSGWDGPTPWRDDPAFSC---NDGHGLR 227

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + G+G+ L P+ +V ++     LVR+++        ++  Y +  +   KL  F + 
Sbjct: 228 MAAIAGAGLLLQPEVLVAEDLASGRLVRVLQPYAPEPRPIHLVYRQDRRPLPKLTGFVDH 287

Query: 290 IFLKA 294
           +   A
Sbjct: 288 LLQHA 292


>gi|170749269|ref|YP_001755529.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655791|gb|ACB24846.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 337

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 117/253 (46%), Gaps = 22/253 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  +RVF  + RSGSF  AA +L LS +S+ R+I  LE  +G  L  RH  G+ LT +G
Sbjct: 13  DWQSIRVFLALQRSGSFRSAATKLGLSVNSVRRRIDDLEALIGAPLLTRHVDGIRLTAEG 72

Query: 64  SKLHRVTSEVYHKLETTQIEL----QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             +     E   ++E     L    + +    +G++RIA T  LG   L   L EF    
Sbjct: 73  HAIL----EAAGRMEAAAFSLVRTGEGAPFAETGEVRIAVTEGLGAFWLAPRLVEFQRAN 128

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L    +  D+    AD AI+L +P  S  L   K+  IHM  YAA  Y +    
Sbjct: 129 PRLTVDLRCAMESADVLRLEADVAIQLTRP-TSPDLRIVKIGRIHMVPYAARSYEETYGL 187

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQY 234
           P   ++L++H ++         +ED+      + A V  PI       L+VN   +    
Sbjct: 188 PARPEDLERHRIVVQDGGQTVALEDYVRSVPGFPAKV--PI------TLRVNVSSAYYWA 239

Query: 235 CVLGSGIALLPDY 247
              G+GI LLP Y
Sbjct: 240 IAKGAGIGLLPTY 252


>gi|170691973|ref|ZP_02883137.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143257|gb|EDT11421.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 305

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 139/290 (47%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE G+
Sbjct: 4   FEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTEDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++   +  L      P G +R+ T+  L + LL   L +F   YP+I +
Sbjct: 64  LFYDRCVRILAEVADAESSLSNKRENPVGTIRVDTSGTLARALLLPALDDFYRRYPEIDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +++ID+  D  DC IR+  P + SSL+ R++    +   A+P YL+    P ++ 
Sbjct: 124 RLGLADRNIDLIQDAVDCVIRMGTP-EESSLVARRIGHARIVTCASPAYLEKYGTPSTLD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  + +  +  +  + F +   V+   +     S L VN     ++   LG GI  
Sbjct: 183 QLSEHRAVNY--VSARTGKTFPFEYEVNGETVKVAMKSVLAVNDGSVYIRAGELGHGIIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++V    +   L  I+ D  +P   +   Y      + +L+AF  ++
Sbjct: 241 PSRFMVAHLIERGVLKEILTDYTSPGTPLSILYAHRRNLSSRLRAFTEWV 290


>gi|294339059|emb|CAZ87408.1| Putative Bacterial regulatory protein, LysR, ycjZ [Thiomonas sp.
           3As]
          Length = 302

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 131/276 (47%), Gaps = 8/276 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D++ L+ F  VAR  SFT AA Q+ +SQS++S ++  LE ++G++L  R  R +  TE
Sbjct: 3   SPDFNDLQAFIAVARERSFTRAAAQMGVSQSALSHRMRALENQLGLRLLTRTTRSVAPTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L +  +  + ++ +    L+E   KPSG +RI         +L   L+  L  YP+
Sbjct: 63  AGERLLQTLAPRFEEIGSELAALRELRDKPSGLIRITAAGHAADTILWPRLQAVLPQYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+++ LD    DI     D  +RL + ++   +  R    + M   A P Y      P 
Sbjct: 123 LQVEINLDYGFTDIVSQRFDAGVRLGESLEQDMIAVRIGPDLRMAVVATPAYFARHPPPQ 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L  HN I     +P+      W    D       +    V N+   +++  ++G+G
Sbjct: 183 TPQDLATHNCINL--RLPRGGL-LAWEFERDGHALNVHVQGQWVFNTSSPLLRAALVGAG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           +A +P+    ++    +L R++ D   P F  Y  Y
Sbjct: 240 LAYVPEDAALEHIATGHLQRVLLD-WCPRFVGYHLY 274


>gi|149191652|ref|ZP_01869895.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148834493|gb|EDL51487.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 294

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 125/262 (47%), Gaps = 10/262 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  VA S  F+ AA+QL  S S +SRQ+S LE  +G+ L  R  R + LT+ G 
Sbjct: 4   FEGINEFVAVAESHGFSAAAKQLGCSTSHVSRQVSRLEERLGVALLARSTRMVNLTQAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++   L+    +L    ++ +G LR++      +N +   L EF   YP++ +
Sbjct: 64  VYYQQCKDLVIGLQQANEQLSSEQIQLNGTLRVSAAGAFAENHVAPALMEFAKGYPELTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D + ++   D  D AIR  + +  S L+ RKLV   M A A+P YL+    P    
Sbjct: 124 EMDFDTRMVNFIEDGIDFAIRYGR-LSDSGLVARKLVDRPMAAAASPEYLERYGVPTHPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ I   +       D        +P+G  R+    + N+  +++  C  G GI  
Sbjct: 183 QLRHHSCIIANN-------DHWVFEDNGKPMGSIRVDGRWRSNNSSAVVNACEQGLGIVY 235

Query: 244 LPDYIVKDNPNLVRIMEDVITP 265
           +P     D  +  R++  V+TP
Sbjct: 236 MPKSSFSDAFHNGRLVP-VLTP 256


>gi|262278567|ref|ZP_06056352.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258918|gb|EEY77651.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 304

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 144/298 (48%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA + SF HAAE L L  S+++  I  LE  + ++L  R  R ++LT +G++  
Sbjct: 9   MQIFVRVAEAESFIHAAEALSLPASTVTSTIKNLEKYLQVRLLNRTTRRVSLTPEGAEYL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E T+  L  +  +P G+LR+     +  +++  NL+EF   YPDI + + 
Sbjct: 69  TQCREILDLIEHTESNLTNAIKQPQGRLRVDMPAGIAHSVIMPNLQEFQGRYPDIYLMIG 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR+   +++S+L+ R L        A+  YLK    P +  +L 
Sbjct: 129 VSDRQVDLIKEGVDCVIRMGN-LENSTLVARPLGEFRWVTCASAAYLKENGIPQTPDDLA 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSI------MQYC 235
            H  I             ++ +  +R  GE R         +Q+N  +++      ++ C
Sbjct: 188 HHRAI-------------HYFSGNNRHTGEMRFVRNGEKKTVQMNGTVAVNETELYIKMC 234

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G G++ L + +V ++     L+ +++D      TV   YP     +  ++ F +++
Sbjct: 235 LEGYGLSQLAERLVTEHLKEKRLIPVLQDWCPSPVTVTLLYPHQRFLSPAVRVFSDWM 292


>gi|170018250|ref|YP_001723204.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739]
 gi|169753178|gb|ACA75877.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|323934697|gb|EGB31087.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1520]
 gi|323939499|gb|EGB35708.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
          Length = 323

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + +NLL   L EFL  +P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             N+ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHNRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|89052618|ref|YP_508069.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88862167|gb|ABD53044.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 295

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 129/285 (45%), Gaps = 10/285 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  LR    VA +GS + AA QL  +Q ++ RQI   E  +G  LF RHARGLT T  
Sbjct: 5   LDWTLLRAVLAVADTGSLSGAAAQLTRTQPTLGRQIKAAEQALGQPLFTRHARGLTPTPF 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              L     ++    +   +     S   SG++R+  ++ +  ++L G L +    +P+I
Sbjct: 65  CETLLPAAQQMNDAAKAVSVLAAGQSPDTSGRVRLTASVFVTAHILPGILADIREAHPNI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++  +   ++    AD A+R+ +P Q   +I + L  + +  YA+  Y+     P S
Sbjct: 125 ALDIVASDTTENLLFHEADIALRMYRPTQ-LDMIAKHLGDLPLGLYASETYIARHGTPHS 183

Query: 183 IQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +L  H ++ +   DLI + M +      V R       +C   +  ++   +   G G
Sbjct: 184 ADDLKHHQMVGYDRSDLILRGMREMGM--EVTRAF---FTTC--TDDQVAYWNFVAAGCG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           I +    + +  P + RI+ D+  P   V+      L++  ++ A
Sbjct: 237 IGIGQTLVAERTPGMRRILPDLRLPVLPVWLTAHPGLRHQPRVHA 281


>gi|51243144|gb|AAT99360.1| putative LysR-type regulator [Sphingomonas sp. tfd44]
          Length = 299

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 15/242 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++ R+F  V  + S   A   L +S S +S++++ LE  +G +L  R  R L+LTE+G++
Sbjct: 4   NEYRLFAAVVDAASLAGAGRALGISPSMVSKRLAALEERLGTRLVNRTTRRLSLTERGAR 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   + +   +   +  + + +  PSG LR++     G+  +  +LK FL  +PDI++ 
Sbjct: 64  FHDEVTAILASMREAERRVSDRTDHPSGPLRLSLPTSFGRLHVVPHLKAFLDTWPDIELT 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +   D+  +  D AIR+   I +S L    L        AAP YL+    P SI +
Sbjct: 124 LDMSDGLRDLFAERIDVAIRITAAI-TSGLTAHHLAPSRRLLCAAPSYLEAYGAPRSIAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241
           L  H L+     +P       W   +D P G PRI    S +  NS  ++ +  + G GI
Sbjct: 183 LGHHRLLAATGQLP-------W--QLDGPSG-PRIVRGRSAVNTNSSEAVRELALAGVGI 232

Query: 242 AL 243
           AL
Sbjct: 233 AL 234


>gi|24114789|ref|NP_709299.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 301]
 gi|30065197|ref|NP_839368.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 2457T]
 gi|110807383|ref|YP_690903.1| putative LysR type transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|24054013|gb|AAN45006.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 301]
 gi|30043459|gb|AAP19179.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 2457T]
 gi|110616931|gb|ABF05598.1| putative transcriptional regulator LYSR-type [Shigella flexneri 5
           str. 8401]
 gi|281602878|gb|ADA75862.1| putative transcriptional regulator LYSR-type [Shigella flexneri
           2002017]
          Length = 323

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + +NLL   L EFL  +P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             N+ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHNRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|171315659|ref|ZP_02904893.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171099191|gb|EDT43964.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 300

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 13/300 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V   GSFT A+ +L +  S +SR++  LE ++G++L YR  R +++TE G  
Sbjct: 4   DSIRIFLRVVERGSFTAASVELDMPLSRVSRKVKHLEDDLGVQLLYRTTRRVSVTEAGRD 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +         L     +++     P G LR+     +G   L+  L EF   +P +Q+ 
Sbjct: 64  YYERCLRAEDILLDADRQVRTLRTDPEGTLRVLVPYAIGLFQLEPALAEFRRRHPLVQLV 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI DN  +D+     D A+R  + +  S  + R L   H    A+P YL     P +  +
Sbjct: 124 LIYDNSPLDLVEHGFDVALRAGQ-LNDSGYVARSLGWSHAKLAASPAYLDRTGRPRTPND 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H+++  G   P        L+  D  + + P    L  N  +++++    G GIAL+
Sbjct: 183 LAQHDILFVGRDAPGLTLR---LSNTDGEVADVPVQPVLISNESVTVLRQATSGGGIALI 239

Query: 245 PDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +       L R   +++ P +       ++  YP       K++AF  F+      W+
Sbjct: 240 STHFTAR--RLARNELEIVLPDWHRTNDVELHVLYPRRATLDSKVRAFVEFMTELFATWR 297


>gi|160873791|ref|YP_001553107.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160859313|gb|ABX47847.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315266017|gb|ADT92870.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 329

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 103/189 (54%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  GS 
Sbjct: 4   EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P + ++
Sbjct: 64  FYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I  ++ +D+     D A  +   + +  L+ R + T  +  YA+P YL     P + +E
Sbjct: 124 VISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAAHGTPKTPKE 183

Query: 186 LDKHNLITF 194
           ++ HN+  F
Sbjct: 184 IEAHNVSMF 192


>gi|146309716|ref|YP_001174790.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145316592|gb|ABP58739.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 295

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 122/278 (43%), Gaps = 6/278 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR GSFT AA QL ++Q ++S+ I+GLE  + I+L  R  R ++ T
Sbjct: 1   MKRNLNDLFAFVTVAREGSFTRAAAQLGVTQPALSQAITGLENRMQIRLLTRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L       + ++E     L E   KP+G +RI     + +  L   L   L  YP
Sbjct: 61  AAGERLLNAIGNRFDEIEAELDMLSELRDKPAGTVRITCGPSVLKETLFPKLTPLLREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++   ++   DI  D  D  +R+   I    +       + M A A+P Y      P
Sbjct: 121 DIHVEFDANHGFRDIVADRFDAGVRMGDTIDKDMIAVPIGPQLRMAAVASPDYFSRFPIP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            +  EL +H  I    +  K    + W    D      R+S  L  N+   I+   + G 
Sbjct: 181 QTPHELTQHQCINQRQI--KSGGLYVWDFDQDGGDLNVRVSGQLTFNTSDHIVDAALAGF 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           G+A LP+    D+     L+R++E    P    Y  YP
Sbjct: 239 GVAFLPEEEFGDHIAAGRLIRVLEPWCQPFPGYYLYYP 276


>gi|157370197|ref|YP_001478186.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321961|gb|ABV41058.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 310

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 136/300 (45%), Gaps = 18/300 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  VA+ G F+ A+  L + +S +S ++  LE  +G+ LF R  R + LTE G
Sbjct: 8   DLNDLYYFAQVAQYGGFSAASRALDIPKSKLSARVLALENRLGVLLFQRTTRRVKLTETG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S L R      ++ E  Q  + +S  +PSG +R++        LL   L  F+   P IQ
Sbjct: 68  SLLLRHAQVAINEAEIAQELIDQSRAEPSGLVRVSCPKLAADVLLSPCLPAFMAANPGIQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL+ ++   D   D  D A+RLR +   S  +I R+L        A+P YL        
Sbjct: 128 VQLLANDNRFDPVTDKIDVALRLRQRKDMSEGMIARELGQSVRILVASPQYLAQHPSLTD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS--- 239
            Q+L +H L+T  D+     E   W   ++ P GE R   ++V   L   ++ +L     
Sbjct: 188 PQQLSEHALLTLVDV----SEQQTW--DLEGPDGEKR--AVRVRPRLMCSEWGILRGALY 239

Query: 240 ---GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              GIALLPD           LVR++         ++  +P        ++A  +F+ ++
Sbjct: 240 QHLGIALLPDITCHQALMQGELVRVLPQWACAPLIMHAVFPTRRGMLPSVRALVDFLAIQ 299


>gi|90420249|ref|ZP_01228157.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335583|gb|EAS49333.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 302

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 127/261 (48%), Gaps = 7/261 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V   G F+ AA    +S S++S+ ++ LE  +G +L +R  R   LT +G 
Sbjct: 9   FAEMEVFATVVERGGFSAAARVSGMSASAVSKLVARLEARLGTRLVHRTTRRFQLTPEGQ 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L   +     +  +P+G++R+ ++     ++L   L +FL  YP+I +
Sbjct: 69  GFYDRAVAILADLSDAE-RAAGAGERPAGRVRLNSSASYISHVLAPILPDFLARYPEIGL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++  ++ +D+  +  D AIR   P+ SS+L+ RKL    M   AAP ++     P +I 
Sbjct: 128 DIVQTDQVVDLVAERTDIAIRA-GPMPSSNLMARKLGQTRMMIVAAPGWVARHGLPRTIA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL+ H  + FG    + M+ +   +     +  P +  +Q+N    + +  + G G A L
Sbjct: 187 ELEAHERLGFG--YARAMKGWPLRSDAGEAVTLPTLGRVQINDGEGLRRLALAGVGPARL 244

Query: 245 PDYIVKDN---PNLVRIMEDV 262
             + ++ +     LV ++ED 
Sbjct: 245 AAFTIRADIAEGRLVPLLEDA 265


>gi|193222375|emb|CAL62460.2| Putative transcriptional regulator LysR family [Herminiimonas
           arsenicoxydans]
          Length = 293

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 19/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  + SFT A  +L +S++ +S+ +  LE  +G +L  R  R L+LTE G   +
Sbjct: 7   MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++  +    +S+  P G L++A  +  G   +   L E++  YP++++ + 
Sbjct: 67  ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  D  D AIR+   +  S LI RKL T  +   A+P YL+    P + ++L 
Sbjct: 127 LADRRVDLIEDGYDLAIRVGN-LPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLK 185

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           +H  + +     GD          W+    +     R+   ++ N+   +    + G+G+
Sbjct: 186 QHACLNYSYSSSGD---------EWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P +IV D+     LV +M+D       +Y  YP     + K++ F +++
Sbjct: 237 IWQPHFIVADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYL 288


>gi|171319247|ref|ZP_02908363.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095549|gb|EDT40513.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 345

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 147/294 (50%), Gaps = 15/294 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--- 66
            F  VA  GSFT AAE+L + + ++SR +  LE ++  +LF R  R   LT +G +    
Sbjct: 35  AFVAVASEGSFTKAAERLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGRRFFEN 94

Query: 67  -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H+  +++   +    +EL++    P G +RI++ +  G+ ++   L++F   YPDI I 
Sbjct: 95  CHQGVAQIVEAM-NDMLELRQG--PPRGVIRISSAVGFGRKIVAPLLEKFAHAYPDIIID 151

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD++ ID+  +  D + R  + I+ SS+I R+L+ + M   AAP Y+     P  I +
Sbjct: 152 LLLDDRPIDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVARYGLPQRIGD 210

Query: 186 LDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           LD+H  I F     +  E +FN    V + +   R   L  N    +++  + G+GIA +
Sbjct: 211 LDRHECINFRFASGRVFEWEFNVDGRVQKYLPTSR---LTFNDADLVLRAVLNGAGIAQM 267

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y ++D   +  LV  +   +      Y CY        +++ F +F+  + R
Sbjct: 268 AGYQIRDHLASNELVVALAKHVPEDRGHYICYLSRQHLPTRIRIFVDFMTERIR 321


>gi|169632130|ref|YP_001705866.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169150922|emb|CAO99529.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii]
          Length = 293

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 34/310 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L+ F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLQFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60

Query: 61  EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            +G  L  RV      ++E   +++++      G++RI T    G   L   L EF + Y
Sbjct: 61  LEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 115

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL     
Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKVYGSQNYLAQNPP 174

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228
              +++L +H  + +                +D  +  P + CL+            +S 
Sbjct: 175 IRRLEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 218

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           L+       G+G+A+LP ++  D P L  ++E  +  + T +      L++  ++K   +
Sbjct: 219 LAQQIAVSAGAGLAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 278

Query: 289 FIFLKARDWK 298
           ++  +A  ++
Sbjct: 279 YLRKQADKYQ 288


>gi|33591527|ref|NP_879171.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33571169|emb|CAE40670.1| probable LysR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332380886|gb|AEE65733.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 293

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 138/281 (49%), Gaps = 18/281 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D LR+F  V  +GS   AAE L  + S +SR ++ LE E+G+ L  R  R + LT
Sbjct: 1   MPLNSDALRLFLAVVDAGSMRAAAELLGHTASGVSRGLARLEAELGVTLLTRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  +    +   L+  Q  ++    +P+G+LR+  +  +  + L  +++EF   YP
Sbjct: 61  EEGRQFQQKARAILLALDEAQECMRIRHQQPAGRLRVDASAPVMLHCLVPHVEEFSRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ++L  +++ +D+    +D A+R    +  SSL  R      +   A+P YL    +P
Sbjct: 121 EIQLELTSNDRIVDLIEHRSDVALRA-GVLSDSSLHARAFKPSTLLVVASPAYLARHGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP---IGEPRISCLQVNSYLSIMQYCVL 237
             +  L +H L+ F    P+ +    W    D     + EP I     +S  ++    + 
Sbjct: 180 RDVAALRRHRLLGFTQ--PETLN--RWPLRHDGGSTFVVEPDIGA---SSGETLRGLALA 232

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVIT----PSFTVYF 271
           G+GIA L D++++ +    +LVR++E        P   VY+
Sbjct: 233 GAGIACLSDFMLRADLASGSLVRLLESADNGYRQPLHAVYY 273


>gi|291086492|ref|ZP_06355950.2| HTH-type transcriptional activator AaeR [Citrobacter youngae ATCC
           29220]
 gi|291067565|gb|EFE05674.1| HTH-type transcriptional activator AaeR [Citrobacter youngae ATCC
           29220]
          Length = 304

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 130/288 (45%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVELGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+ +    +L   +  P G LRI  +  + QN+L G     L  YP + + L+
Sbjct: 61  QGCRRMLHEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTATMLKEYPGLTVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLAQFGVPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +        E         R I E R      N  ++++++   G+GIA +P  
Sbjct: 180 NHSWLEYSVRPDNEFELIAPEGISTRLIPEGRFVT---NDPMTLVRWLAAGAGIAYVPLM 236

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V +  N  R   +++ P +      VY  Y E  K   K++   N++
Sbjct: 237 WVINEIN--RGEVEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINYL 282


>gi|295699410|ref|YP_003607303.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438623|gb|ADG17792.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 297

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 143/299 (47%), Gaps = 29/299 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L L+Q ++SRQI  LE      LF RHA+GLTLT +G  
Sbjct: 8   NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEEYYKFPLFKRHAKGLTLTAEGEM 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E + ++E  ++ L+ +  +    L++ T +      +   +  F   YPD+ +Q
Sbjct: 68  LLPTVKESFARIE--EMSLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQSEYPDLHVQ 122

Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +      D+D   +  D AI         +Q+ SL + +L  +       P  LK+  +P
Sbjct: 123 ITTTWQHDVDFQSEPFDAAIIYGSSPGADVQAVSLFEERLTPV-----CTPELLKD--KP 175

Query: 181 LS-IQELDKHNLI-------TFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSI 231
           L+ + +L +H L+        +   + K  E D    AT+D  +G P    L + +  + 
Sbjct: 176 LAQVADLARHTLLHPTRDHRDWKMWLAKVAETDATGAATIDAELG-PSFDTLDMATNAAA 234

Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + +  S +AL+ + +      LVR  E V+   +  YF YP+++    KL  FR+++
Sbjct: 235 QGFGIAISDLALIDEDVAAR--RLVRPFETVLKTGWRYYFVYPDSVAQQQKLNLFRDWM 291


>gi|226945165|ref|YP_002800238.1| transcriptional regulator LysR family protein [Azotobacter
           vinelandii DJ]
 gi|226720092|gb|ACO79263.1| Transcriptional regulator LysR family protein [Azotobacter
           vinelandii DJ]
          Length = 309

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 1/186 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A SGSF+ AA QL L+ +++SR ++ LE  +G +LF+R  R LTLTE G + 
Sbjct: 6   NLESFVRSAESGSFSAAARQLGLTPAAVSRNVALLEKNLGTRLFHRSTRKLTLTESGERF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     L+    E+     +P+G L+++  +  G   L   L +FL  YP ++I  
Sbjct: 66  LLGVRGHLDGLQAAISEVASDRGEPAGVLKVSVALAFGMEYLLPLLPDFLQRYPHVRIDW 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             DN+ +D+  +  D AI     + +  ++ R L   H+ A A+P Y+K  R P S +EL
Sbjct: 126 QFDNRQVDLIAEGFDAAIGGGFEL-AQGMVARTLAPAHIIAVASPTYMKGRRNPFSPEEL 184

Query: 187 DKHNLI 192
            + + I
Sbjct: 185 AELDGI 190


>gi|160900209|ref|YP_001565791.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365793|gb|ABX37406.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 299

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GSFT AAE+L LS++  +R +  LE  +G +L +R  R ++LT+ G++  
Sbjct: 7   MQVFATVAECGSFTAAAERLDLSRAMATRHVESLEQWLGARLLHRTTRRVSLTDAGAQCL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R + ++    +  Q E++    +  G LR+  ++  G   +   + +F+ L+P ++I L+
Sbjct: 67  RYSQQMLALADEVQGEMRAGDSQLRGLLRVTCSMSFGHAQMAPAIAQFMRLHPHLKIDLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+  +D+     D AIR+      ++LI R L        A+P YL     P +  +L 
Sbjct: 127 VDDGALDLVQQRIDLAIRISAD-PGAALIGRPLAVCESVLVASPAYLDAAGRPQTPAQLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H  +  G +  +   +   LA  D    E +I+       N    +    V G+GIA  
Sbjct: 186 AHRCL--GHM--RVGRNVWQLARRDDESDEQQIAVTTWFNANEATVLAAAAVEGAGIAFQ 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y+V+       L  ++ D      TV+  Y         ++A  +F+
Sbjct: 242 PTYLVQPMLQAGQLELVLPDWRPQPLTVHALYSSRRHLPVAVRALLDFL 290


>gi|323166999|gb|EFZ52738.1| hypothetical protein SS53G_2841 [Shigella sonnei 53G]
          Length = 299

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + +NLL   L EFL  +P I+++L 
Sbjct: 67  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             N+ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHNRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAMVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGQLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|320664046|gb|EFX31233.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. LSU-61]
          Length = 299

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQLI
Sbjct: 69  SVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLI 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMGKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|270263665|ref|ZP_06191934.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042549|gb|EFA15644.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 297

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 123/270 (45%), Gaps = 23/270 (8%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           FD+   +  F  V   GSFT  A  L  + S +SR +S LET +G +L +R  R L LTE
Sbjct: 5   FDYLGDVEAFIAVIEKGSFTAGAVALSTTASVLSRAVSRLETRLGRQLLHRTTRHLGLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G          + +L+    E+Q    + +G++RI+     G   L   L  F   YP 
Sbjct: 65  AGRLYLEQARSAFQQLDDAGREIQGLEGELTGRVRISVPTTYGHYRLPPLLARFAQQYPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L + N+++D+  +  D AIRL   +  S L+ RKL    +   A+P YL     P 
Sbjct: 125 VRVELNITNRNVDLVAEGFDLAIRL-GDLPDSGLVARKLEDAALLLVASPGYLNRAGTPK 183

Query: 182 SIQELDKHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           +++EL++H  + F     G L P        D +WL         P  S    +  L ++
Sbjct: 184 TLEELERHMCLPFVMPRTGRLAPWVFRDGERDVDWL---------PSSSIEISDDVLGVV 234

Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIM 259
                G GI    ++IV D   N  LV I+
Sbjct: 235 SLAEQGIGICQSYEFIVHDRMENGRLVEIL 264


>gi|254509574|ref|ZP_05121641.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221533285|gb|EEE36273.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 304

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 137/293 (46%), Gaps = 14/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   GS + A   + +S +  S +IS LE  +G++LF R  R LT TEQG  
Sbjct: 5   DNIRTFVRVYDLGSMSAAGRDMRISPAVTSARISQLEDHLGVRLFQRTTRNLTPTEQGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   ++  + ++   +  P G L +A  + +G+ LL  ++ +FL  Y +I ++
Sbjct: 65  FYPGAVAVLDAVDEAEAQVTHLTEAPRGSLFVAAPLGIGRRLLAPHVPDFLSEYAEIDVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A  + +P + S+L  RK+        AAP Y++    P +  E
Sbjct: 125 LRLTDRSVDLTTEGLDLAFFIGQP-EDSTLRIRKIADCARVLCAAPAYVERRGMPETGAE 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           L  DKH  +      P   E F W+  +D P G  R +     + +    +  + + G G
Sbjct: 184 LIADKHECLNL--RFPGATE-FQWM--LDTPEGPKRFAVSGRFECDDGDVLTDWALSGQG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFC--YPEALKNTGKLKAFRNFI 290
           IA+ P + V ++    R++     TP  TV     Y        K + F +F+
Sbjct: 239 IAMKPVFEVSEHLKTGRLIPVATQTPPVTVQMACLYTHRRHQDPKARLFMDFM 291


>gi|209517419|ref|ZP_03266261.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209502186|gb|EEA02200.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 323

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 120/237 (50%), Gaps = 2/237 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L+ F     S +F+ A  QL ++  ++S+QI  LET +G +LF R  R L++T++G 
Sbjct: 12  FRALKTFAATVESTNFSAAGRQLGVTPGAVSKQIGMLETLLGCRLFQRTTRHLSVTDEGR 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L+ +  E   ++E     L  +  + SG ++++  I   +  L   L  F   YP + +
Sbjct: 72  RLYAMAREPAQQIEDAIAALSSNETQLSGTVKVSLPIAFSRVALLPVLGRFRERYPQVTL 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  +N+ +D+  +  DCAI        SS++ R L ++ +   AAP YL+   EP +I+
Sbjct: 132 DLRFENRHVDLISEGYDCAIGQLHDT-DSSVVARTLASLTLILCAAPAYLERHGEPQTIE 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L+ H LI F       ++ +  LA     + EP  S L V+   ++ +  V G GI
Sbjct: 191 DLEHHELIAFRSPSSGRIQTWKLLARNKEVVFEPG-SHLIVSDTEALTEVAVGGCGI 246


>gi|260426363|ref|ZP_05780342.1| LysR substrate binding domain protein [Citreicella sp. SE45]
 gi|260420855|gb|EEX14106.1| LysR substrate binding domain protein [Citreicella sp. SE45]
          Length = 300

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 10/218 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  +   GSF  AA  LH+++S+ +  I+ LE E G++L  R  R +  T +G++
Sbjct: 5   DRLELFTRIVEGGSFARAARDLHVARSTATNAINQLEQEAGVRLLARTTRQVAATPEGAE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    +  ++E T       S  P+G LRI  +  L +  L   L  FL  +P + I 
Sbjct: 65  FYRRARAILAEVEDTFGTFASGS--PTGHLRIDASGLLTRTFLVPRLPAFLERFPGLTIS 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++ +DI  D  DCA+R   P Q SSL  RKL  +     A+P YL     P    +
Sbjct: 123 FSQSDRFVDIVRDGVDCALRAGHP-QDSSLRMRKLGELPEITCASPAYLARHGTPRDCDD 181

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEP 218
           L+ H +I F     G+++P  +E     ATV R +  P
Sbjct: 182 LESHRMIGFLSSRTGEVMP--LEFRRDGATVHRRLPAP 217


>gi|237799694|ref|ZP_04588155.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022549|gb|EGI02606.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 298

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 141/292 (48%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +++F  V   GS+T AAE L++ + ++S+ I  LE E+G++L +R  R +  T  G +
Sbjct: 5   EAMQMFVAVVDQGSYTKAAEALNVHRPAVSKLIQNLEHELGVQLLHRTTRRVNTTPAGDE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  + ++  +L  T +EL   +  P GKLRI     LG  ++   L EF+  YP ++I 
Sbjct: 65  FYERSLKLLSELAET-LELFSPTRAPRGKLRIDMQTVLGHAVIIPRLPEFMERYPGLEIS 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   D+  D  DC++RL   +  SSLI +++  + +   AAP Y+K    P ++ +
Sbjct: 124 LGASDNLNDLIADGIDCSVRLGD-LDDSSLIAKRIGEVALVTCAAPAYIKKHGLPDTLDD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL-- 243
           L  H  + F  ++ +  +   W    +      ++    V      + YC L +GI +  
Sbjct: 183 LQAHLAVNF--MVEQRRQIMPWRFRANGKTINVKMRSGIVVDNAEALLYCAL-AGIGMVQ 239

Query: 244 -----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                L  YI  D+  L+ ++ DV     TV   +P+    +  ++ F  ++
Sbjct: 240 GLRPALKRYI--DSGRLIEVLPDVSVEPKTVSVLFPDRRHLSPNVRVFVEWV 289


>gi|239813744|ref|YP_002942654.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800321|gb|ACS17388.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 301

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 8/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V    AR G+ T AA  L ++ ++ S  +  LET++G +LF R  R + LT QG  L 
Sbjct: 9   LQVLVQTARGGTLTAAAHALGMTPAAASATLKRLETQLGARLFERSTRAMRLTSQGQTLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  L+  +  +     +  G LR+A   DL ++ L     EFL L+P +Q+ L 
Sbjct: 69  DYAVRAFELLDEGESLVTAERGELVGTLRVAAPSDLTRSTLLPWFDEFLALHPGVQLSLS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D++ D  D A+R    +  S L+ R     +    A+P YL+    P + Q+L 
Sbjct: 129 VGDRLLDVTRDEVDVALRY-GALADSRLVARPFALTNPLLTASPAYLRRHSAPKTPQDLV 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            HN +TF            W    +    E R+     V+      ++ V G GI L   
Sbjct: 188 HHNCLTFDR---GGRRHRTWRFAQNGQWTEVRVKGDRSVDDASLAREWAVAGLGIVLKSA 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             V+++     LVR++ +  T  + ++   P       +++A  NF+ LK
Sbjct: 245 LDVREDLRKGALVRLLPEWDTEPYPLHALLPSGRFVPARVRALVNFLALK 294


>gi|293602079|ref|ZP_06684533.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292819534|gb|EFF78561.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 360

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 147/290 (50%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  V  + SFT AA+ L L +++++  I  LE  +G++L  R  R + LT  G+
Sbjct: 4   FQAMQVFVRVVDANSFTRAADSLSLPRTTVTTIIQNLERLLGVRLLNRTTRRIGLTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E T+   QE++++  G+LRI     +G+ +L  +L +F   YPD+++
Sbjct: 64  GYYQHCVRILADVEETEACFQEAALRLKGRLRIDVPTCIGRLILIPSLCDFHDKYPDVEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  DC IR  + ++ SSL+ R++ T+     A+P Y+     P +I+
Sbjct: 124 VLGLGDRPVDMVQEAVDCVIRGGE-LEDSSLVARRIGTLQTVTCASPTYIARHGMPQTIE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  H+ + +   + +   +  W   VD    E  +   + VN   + +   + G G+  
Sbjct: 183 ALRDHHAVHY--FMSRTGRNCPWDFKVDGKHQEVDMKGTVAVNEAGAYLDCGLKGFGLIQ 240

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  Y+      +  L+ I+      S  +   YP++ + + K++AF +++
Sbjct: 241 VARYMALPHLQSGELIEILPQWKPSSTPISVLYPQSRQLSPKVRAFTDWV 290


>gi|251792526|ref|YP_003007252.1| LysR protein [Aggregatibacter aphrophilus NJ8700]
 gi|247533919|gb|ACS97165.1| LysR protein [Aggregatibacter aphrophilus NJ8700]
          Length = 302

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA   ++S +  S+ +S LE  +  +L +R  R +  TE GS 
Sbjct: 5   NAISIFCKVIETQSFTQAAALQNISVAMASKLVSQLEEHLKTRLLHRTTRKIVPTEAGSI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    V  +LE     +   S    G L ++   D G   +  NL  F+  +P++ I 
Sbjct: 65  YYQRCQPVLFELEDADSSISNLSTSLQGHLTVSVPRDFGLRFITPNLGSFVKAHPNLHID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +++ ID+  +  D A+R+   +Q SSL+ RK+ T  MH  A+P YL     P + ++
Sbjct: 125 IEFNDRIIDLVSEGFDLALRIGY-LQDSSLVARKVATSSMHFVASPEYLAKHGTPQTPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H+ + +     +   + +      R     ++ C   N+ L++   C  G GI   P
Sbjct: 184 LEHHDCLLYKSTGNQIYWESDKHNKTQRVKMRSKLMC---NNGLTLATLCTEGLGIINSP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + +++   +  LV ++ D    S  ++  YP       K+ AF +FI
Sbjct: 241 RFFIEEELASGKLVEVLADYRQQSLDLHVIYPNRRHLAAKVTAFIDFI 288


>gi|116250116|ref|YP_765954.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254764|emb|CAK05838.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 296

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 13/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+ + L +F     SGSFT AA  L + +S++S++++ LE  +G++L  R +R   LTE 
Sbjct: 4   FNLNDLHLFVQAVDSGSFTAAARHLGIPKSTVSKRVAELEARLGVRLIQRTSRSFALTEL 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +       + E  +  ++    +P+G +R+  ++   Q  L  +L    + YP +
Sbjct: 64  GREFFQHAQASIIEAEMAEGIVRRHLAEPAGSVRLTASVPTAQFTLTEHLPALAVRYPKL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ + + ++ +DI  +  D A+R  R P+  S+L+QRKL +      A+P Y+    +P 
Sbjct: 124 RLSVHVTDRFVDIVQEGFDIALRSHRTPLPDSALVQRKLASHPFFILASPDYVSVHGQPR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H  I     +    ED   L +    +     S +  +    +M+  + G GI
Sbjct: 184 RPEELAQHATI-----MTSLTEDLWRLYSGGDEVLVALQSVMAADEPYVLMEMAMSGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKAR 295
             LP  + +    +  LVR++ +    S       P      G+L A R  + FL  R
Sbjct: 239 TCLPTSVCRKALADGRLVRVLPEWTAGSIETTILMPH---RRGQLPAVRAVVDFLAER 293


>gi|300702499|ref|YP_003744099.1| transcriptional regulator protein, lysr family (aaer) [Ralstonia
           solanacearum CFBP2957]
 gi|299070160|emb|CBJ41451.1| putative transcription regulator protein, LysR family (aaeR)
           [Ralstonia solanacearum CFBP2957]
          Length = 298

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 134/302 (44%), Gaps = 30/302 (9%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V  +G+FT AA QL +S   + + +  LET +G +L  R  R  +LT+ 
Sbjct: 2   DKLRGMETFVAVVDTGNFTEAAVQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     V  ++   +  ++    +PSG LR++     G  ++      F   +P +
Sbjct: 62  GRVFYDDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D++ +  D A+R+  P+  + L+ + L    M   A+P YL    +P +
Sbjct: 122 RVELDLSNRMVDLADEGFDLAVRI-GPLGDADLVAKPLCAYRMAICASPDYLTRHGQPET 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPI---GEPRISCLQVNSYLSIM 232
             +L  H          +C+    W       L+  D P     +P  SC   N    + 
Sbjct: 181 PADLPAH----------RCLSHMVWNRRNAWQLSGWDGPTPWRDDPAFSC---NDGHGLQ 227

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + G+G+ L P+ +V ++     LVR+++        ++  Y +  +   KL  F + 
Sbjct: 228 MAAIAGAGLLLQPEVLVAEDLASGRLVRVLQPYAPEPRPIHLVYRQDRRPLPKLTGFVDH 287

Query: 290 IF 291
           + 
Sbjct: 288 LL 289


>gi|240949243|ref|ZP_04753587.1| LysR family transcriptional regulator [Actinobacillus minor NM305]
 gi|240296359|gb|EER47003.1| LysR family transcriptional regulator [Actinobacillus minor NM305]
          Length = 304

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 144/296 (48%), Gaps = 19/296 (6%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D  + +R F  +   GSF+ A+E L +++++IS QI  LE  +G+ L +R  R +  
Sbjct: 1   MALDRLEAIRAFCRIVELGSFSKASEVLGVAKTTISGQIQALEERLGMTLLHRSTRRVYP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G+  +     +    +  +  +Q+ S    GK++I TT  LG NLL   L +FL  Y
Sbjct: 61  TTDGTAYYEQVKILLENFDDLENLIQDKSTL-RGKIKIETTAPLGSNLLIPALPDFLQKY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I++++    + +D+  +  DCA+R   P+    L+ + +  +     AAP YL N  E
Sbjct: 120 PEIRLEIRCSERAVDLIQEGVDCALR-GGPVTEPDLVCKPVGQMRFCLCAAPRYLNNAPE 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ---YC- 235
               ++L +H  I F   +   +  +  L   D       I  ++++ YL+      YC 
Sbjct: 179 LSHPRDLAQHQYIGFRFPVTDKLHTYT-LKNGD------EIYNVELSPYLTFNNADVYCN 231

Query: 236 --VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             + G GI  +P   V+   ++  LV ++ +  T S  +   YP + + + +++AF
Sbjct: 232 ASLAGLGIIAMPRASVQRYFESGELVEVLPNWQTSSMPISIVYPYSRRLSARVRAF 287


>gi|34496737|ref|NP_900952.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34102592|gb|AAQ58957.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 308

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 132/293 (45%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA  GSF  AA +L LSQ ++S+ ++ LE  +   L +R +R L LT  G
Sbjct: 6   DLEAWAIFAKVAECGSFARAAAELALSQGTVSKAVTRLEARMKTTLLHRTSRRLALTAAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  + ++ E S    G++R+A  +  G + L   L EF+  +P+++
Sbjct: 66  DAALERAARILAEGEAVEADVAEQSGSLRGRVRVAAPMSFGISHLAPLLPEFMARHPEVE 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +     ++ +D+     D A+R+  P   SSL+ R+L  + +    AP Y +    P   
Sbjct: 126 LDFHFSDEQVDLVAQRMDLALRIASPAD-SSLLARRLCAVRILLVGAPGYFERHGRPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  + + +  P     F      +  +  P  S L+VN+  ++      G G+AL
Sbjct: 185 SELAHHRALQYSN-APGRHWRFRHAEEGEFALEAP--SPLRVNNAEALTPALRAGLGLAL 241

Query: 244 LPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P+++V ++    R+   M         +Y   P       +++A   ++  K
Sbjct: 242 QPEFLVWEDLRAGRLETAMAGWEVDPIALYILTPPGRGRPARVQALIAYLAEK 294


>gi|152989245|ref|YP_001349416.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964403|gb|ABR86428.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 302

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 13/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
             T + Y  L   +  L ES  +PSG LRI + + L ++LL    L  F+  YP +Q+++
Sbjct: 70  EQTEQPYRDLLRAREALGESLEEPSGHLRI-SALHLAKHLLTAPLLGAFVQRYPKVQLEI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P ++  L
Sbjct: 129 RYEDQLVDIVREQLDAGIRLADALQPGMVGVQLTPPLACLLVATPAYLAERGTPAALDGL 188

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--L 243
           D H  + F    P+      W L    R +     +        +I++    G+GIA   
Sbjct: 189 DGHVAVRF--RFPRSGRLHKWRLREGAREVEADLPARFVSTDTEAIIEAARAGAGIAQVF 246

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + + +  D     LV ++     P   ++  Y        KL+A    +    R+W+
Sbjct: 247 IRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRALIELL----REWR 299


>gi|78066847|ref|YP_369616.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967592|gb|ABB08972.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 297

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 141/291 (48%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A +G+FT AA  L LS S++S+ ++ LE E+G++LF+R  R +TLT  G    
Sbjct: 7   ISTFVRAAEAGNFTRAARLLQLSPSAVSKAVARLEAELGVRLFHRSPRQITLTGDGELFF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V  +    +   +  L  +S    GK+R+   +  GQ +L   L ++L  +P + I+L 
Sbjct: 67  AVCRQGMTDIADARSRLAGASQPWRGKMRLCVPVSFGQYVLAPALGDWLGAHPGLDIELA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D++ +  D A+ L + +  S L+ R L        A+P YL++   P +  +L 
Sbjct: 127 LTDRHVDMTAERFDLAVMLGE-VPDSRLVARPLPAHRFVTVASPAYLQSRGVPDTPDDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H  + +  +      D+ ++   D+    P+G   ++   V++ L++ +    G GI  
Sbjct: 186 NHTCLRYVMVNSGQFRDWMFVRGGDQYSHFPVGP--LASDHVSALLALSEA---GGGILQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            P Y+V  +     LV ++ D  +    +   Y +A + + + +   +F+ 
Sbjct: 241 APHYVVAPSLAAGRLVPVLSDFKSIGAPLSVVYEKARQASARTRLAADFLL 291


>gi|28900861|ref|NP_800516.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260879228|ref|ZP_05891583.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|28809307|dbj|BAC62349.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308094076|gb|EFO43771.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
          Length = 300

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 18/295 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 5   DDYIIFYHLVEQGSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGQS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  VY  + T +  +       SG ++I      G+ +L G + EF   YPDI I 
Sbjct: 65  FFVHAKAVYKAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDINID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P    E
Sbjct: 125 MELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQPIE 183

Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L KHN + +        E      D  +  TVD          L  N+  ++    +LG 
Sbjct: 184 LTKHNCLVYSYQETGAREWAFKAGDKMYQVTVD--------GNLCTNNSSALRNVALLGQ 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+  +P  +V ++    +L+++ ++       +Y  YP   +   K+K F + ++
Sbjct: 236 GVIYVPRVLVYEDLKQGSLIQLFKEETAKCLGIYAVYPYTRQQPEKIKIFIDHLY 290


>gi|317046798|ref|YP_004114446.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316948415|gb|ADU67890.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 307

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 120/247 (48%), Gaps = 9/247 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+A  GSFT AAE+L +S++++S++I  LE   G+ L  R  R + LT  G 
Sbjct: 10  WVHLHWLTVLAELGSFTRAAERLDVSKAAMSQKIKELEQMAGVALVQRTTRSVRLTSAGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL     + + ++E +   +++ +    G +R++  +   +  L   L +FL  YP ++I
Sbjct: 70  KLVDELRDPFARIEQSFFSVRDEAGPVRGMVRVSAPVAFARQQLVPILGDFLREYPQVRI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ + +  +  D AIR  + +  +  +   L        A+P YL+ C  P + Q
Sbjct: 130 QLDVTDRLVSLGSEGFDLAIRHSQQLPETH-VALPLCETQTLLVASPAYLRECGTPQTPQ 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISC-LQVNSYLSIMQYCVLGSG 240
            L +HN + +    P+ +E   W        GE    RI      N+  SI    + G G
Sbjct: 189 ALQQHNCLYY----PRGLESPQWRFRPQNDGGETVQVRIQGNFATNNSESIRDAALQGIG 244

Query: 241 IALLPDY 247
           IA+LPD+
Sbjct: 245 IAMLPDF 251


>gi|194433835|ref|ZP_03066109.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|194417938|gb|EDX34033.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|320180228|gb|EFW55163.1| LysR family transcriptional regulator YcjZ [Shigella boydii ATCC
           9905]
 gi|332098084|gb|EGJ03057.1| hypothetical protein SD15574_0411 [Shigella dysenteriae 155-74]
          Length = 299

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 130/288 (45%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQLI
Sbjct: 69  SVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLI 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  +     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAVNL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074981|gb|ADJ64380.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 308

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 138/299 (46%), Gaps = 21/299 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  SGSF  A +    S+ ++SRQ+S LE  +GI+L +R  R L+LT++G    
Sbjct: 7   MQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDEGRVYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   ++  + E+  +S +  G+LRI    D G   L     +F   +P I + + 
Sbjct: 67  ARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPLITLNIT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  +  D AIR+   +  S ++ R L  + M A AAP +L     P +  EL 
Sbjct: 127 LSDRTIDLLEEGFDMAIRI-SALGDSRMVARPLAPVRMIACAAPEFLARHGTPGTPAELR 185

Query: 188 KHNLITF-----GDLIPKCMEDFNW-LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            +  I++     GD         +W    V     + R+ S + VN+  +     + G G
Sbjct: 186 DYPFISYSYRAGGD---------DWSFRHVHGDTCQVRVRSTVYVNNGATCRAMAIAGQG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA+ PD+IV        LV + E   T     V+  YP       K++  R+F+  + R
Sbjct: 237 IAIQPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLIEQFR 295


>gi|319796026|ref|YP_004157666.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598489|gb|ADU39555.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 315

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 130/296 (43%), Gaps = 14/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  +  +GS + AA ++  +Q ++SR++  LE  +G++L  R    + LTE G + +
Sbjct: 14  MQTFIHIVEAGSLSAAALRMDATQPTVSRRLQALERSLGVRLLRRSTHAMKLTEDGERCY 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+       + +L+    +P G LR+     LGQ LL G L ++L  YP + ++ +
Sbjct: 74  ERAKELIANWRAFEADLRGVGDEPEGTLRVVAPHALGQRLLVGPLADYLRAYPRVSVEWL 133

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D   +  DCAI++ + +  +  +  KL  +     AAP  L+  + P    EL 
Sbjct: 134 LHDRRPDFIAEGVDCAIQVGE-VTDTMAVAIKLSEVPRVVVAAPSVLEGRKPPTHASELA 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIAL 243
           +   +             N +    RP GE    P   CL  +S  ++     +G G  +
Sbjct: 193 ELPWLALRTFY------RNEVQLTHRPSGEIARVPIRPCLSTDSLYALHSAAAMGLGACI 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              +++ D+     LV+++         VY  Y  A     +L+ F   + L   D
Sbjct: 247 GSAWLMNDDIAAGRLVQLVPQWHAAPLPVYLTYSPARFQPARLRRFIEMVRLAMAD 302


>gi|227823412|ref|YP_002827385.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227342414|gb|ACP26632.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 317

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 128/267 (47%), Gaps = 24/267 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF      G F+ AA    ++ S++S+ +  LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEVFAKAVELGGFSAAARHFRMTPSAVSKLVLRLEERLGVRLVNRSTRKLQLTPEGHAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H  T+ +   ++  +     +   P+G++R+      G ++L   + EF   +P + +++
Sbjct: 71  HERTTRILADIDEAE-RCASAGESPTGRVRLNVNASFGTHILMPLVPEFRARFPAVTLEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +  +D+    AD A+R   P++ S+LI RKL    M   AAP Y++    P S+ +L
Sbjct: 130 VQTDAVVDLMEARADVAVRA-GPLKGSTLIARKLGATRMMIVAAPSYVERNGMPASLGDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD----RPIGE----PRISCLQVNSYLSIMQYCVLG 238
             H  + F      C     ++  VD    R  GE    P    +QV+    +    + G
Sbjct: 189 RAHERLGF------C-----YMRVVDGWPIRDGGETIVLPASGAVQVSDGEGLRHLALAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDV 262
           +G+A L ++ V+++     L+ ++ED+
Sbjct: 238 AGMARLAEFAVREDVRAGRLLPVLEDL 264


>gi|74314225|ref|YP_312644.1| putative LysR type transcriptional regulator [Shigella sonnei
           Ss046]
 gi|73857702|gb|AAZ90409.1| putative transcriptional regulator LYSR-type [Shigella sonnei
           Ss046]
          Length = 323

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + +NLL   L EFL  +P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             N+ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHNRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAMVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGQLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|300704974|ref|YP_003746577.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299072638|emb|CBJ43988.1| putative transcriptional regulator, LysR family precursor
           [Ralstonia solanacearum CFBP2957]
          Length = 338

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 11/275 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF     +G FT AAE+L LS+S++ + I+ LET +G++LF+R  R   LTE G  
Sbjct: 12  DGVAVFVEAVEAGGFTRAAERLALSRSAVGKAIARLETRLGVRLFHRTTRTQNLTEDGQV 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +L   +  L     + +G+LR+   +  G+  +   L EF   +P ++++
Sbjct: 72  YYERCLRAIEELRAAESLLDSGKQEVAGRLRVTMPVLFGRYCVAPILLEFARQHPKLELE 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  D  IR     +++ L  R L T      AAP YL+   +P +I+ 
Sbjct: 132 LSFSDRPVDMIAEGFDLGIRNGALGEATGLCARPLATQPKVLCAAPAYLEMRGQPDTIEA 191

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H+++     G   P  + D +   T  R     R   L+V +        V G GI 
Sbjct: 192 LANHDVLIHWRTGHPYPWLLPDTDGRLTEVRLASRLRFDDLEVTA-----DAAVAGMGIT 246

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYP 274
            LP ++V    D   L  + ED    S   +  +P
Sbjct: 247 WLPHWLVCHRIDAGALTVLWEDRPAASMDTHAIWP 281


>gi|123443908|ref|YP_001007879.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090869|emb|CAL13751.1| putative LysR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 297

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 6/281 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLISFLMVARERSFTKAAAKLGVSQSALSHSIRGLEERLELRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++E+    L E   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  ERLANSLEPRLAEIESELDALSEMRARPAGNIRITAGEHAVDSVLWPVLKSFLAEYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  IRL + +    +  R    + M   A+P YL     P + 
Sbjct: 125 VEITVDNTLTDIVTGRFDAGIRLGEQVAKDMVAVRIGPDMSMAVVASPSYLAKYGIPTTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I     +P     + W      R +       L  NS    +   V+G G+A
Sbjct: 185 ADLQHHRCINM--RLPTMGGLYAWEFEKEGREVKVRVDGQLTFNSIRQRIDAAVIGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
           ++P+  VK    + NL+R++ED   P    Y  YP   ++T
Sbjct: 243 MVPEDAVKAEIASGNLIRVLEDWCEPFPGYYLYYPSRRQHT 283


>gi|114330722|ref|YP_746944.1| transcriptional regulator, LysR family protein [Nitrosomonas
           eutropha C91]
 gi|114307736|gb|ABI58979.1| transcriptional regulator, LysR family [Nitrosomonas eutropha C91]
          Length = 310

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 145/298 (48%), Gaps = 24/298 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +  +GS + AA+++ +++S ISR++  LE  +G++LF+R  R + LT+ G 
Sbjct: 4   FENMNTFAYIVEAGSISAAADRMDVAKSVISRRLKELEAHLGVQLFHRTTRQMKLTDSGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +  +   +   +  + +      G L++A  +  G   L   +  FL  +P I+ 
Sbjct: 64  AFYEQSVRILADILEAEHAVSQFHGALKGNLKVAVPLSFGLMHLGPAITAFLHTHPGIKF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  +++ +D+  +  D AIR+   +  SSLI R L  I     A+P YL++   P + +
Sbjct: 124 DLDFNDRQVDLLAEGFDLAIRIAS-LPDSSLIARHLAPIQAVMCASPAYLEHMGMPQTPE 182

Query: 185 ELDKH-----NLITFGDLIPKCMEDFNWLATVDRPIGE---PRIS-CLQVNSYLSIMQYC 235
           EL +H     NLI+  D         NW   V  P G+    RI+  L+ ++   +    
Sbjct: 183 ELIRHRCLAYNLISNSD---------NW--HVYDPAGQLIKTRITPYLKASNGEFLRDAA 231

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V G GI LLP +IV    ++  L+ I+ +        Y  YP+    + +++AF +F+
Sbjct: 232 VDGLGIVLLPAFIVYREIEHGALLPILTEYHYSQLAAYAIYPQTRHLSQRVRAFVDFL 289


>gi|226945309|ref|YP_002800382.1| transcriptional regulator LysR family protein [Azotobacter
           vinelandii DJ]
 gi|226720236|gb|ACO79407.1| Transcriptional regulator LysR family protein [Azotobacter
           vinelandii DJ]
          Length = 300

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 130/280 (46%), Gaps = 21/280 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L  F  VAR  SFT AA QL +SQ+++S  I  +ET +G++L  R  R ++ TE G 
Sbjct: 6   YNDLLAFIAVARERSFTRAAAQLGVSQAALSYTIRTMETRMGVRLLTRTTRSVSPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L +     + ++E   + + E   KP+G LRI  + +  + +L   L + L  +P I +
Sbjct: 66  RLLQSIVPHFQEIEAELMAVGELRDKPAGTLRITASENAAETVLWPRLAKLLPKHPLINV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ ++++ +DI  +  D  IRL   +       R    + +    +P YL     P   Q
Sbjct: 126 EVTVESRFVDIVAERYDMGIRLGDELARDMTAVRISPDMRVAIVGSPGYLAKHPAPRKPQ 185

Query: 185 ELDKH-----NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           +L  H      L++ GDL       + W     +     R+   L  N    I+   + G
Sbjct: 186 DLADHVCINLRLMSHGDL-------YAWELKKGKQQVNVRVEGRLVFNGTRPILHAALAG 238

Query: 239 SGIALLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCY 273
            G+  LP+     YI K    L R++ED  +P+F  Y  Y
Sbjct: 239 FGLGYLPEDMAQPYIAKG--RLERVLED-WSPAFPGYHLY 275


>gi|290510966|ref|ZP_06550335.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289775959|gb|EFD83958.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 305

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 131/282 (46%), Gaps = 11/282 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  SG+F  AA  LH+++S++ + I+ LE  +G+ LF R  R   LT
Sbjct: 1   MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G + +    E   ++   +  LQ    +  G+LRI+  +  GQ  +   L      YP
Sbjct: 61  EEGEQFYHQCREALARIREAEEALQRGKGEVQGRLRISLPVLFGQRCVAPVLFRLSQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +++  +  D A+R+     + SL  R L    M   AA  YL+    P
Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGNLADTGSLRARALGEHGMVLCAAVEYLRRQPPP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237
            +I  L +H   T G L    ++ +      D   GE R S    L  + + +I    + 
Sbjct: 181 QTIAGLSEHR--TLGYLHNGQLQKWQ---LYDPQQGEVRFSPQTGLVQDDFAAIAAAVLQ 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           G GIA LPD++V     +  L +++       F ++  +PE 
Sbjct: 236 GMGIAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEG 277


>gi|170690154|ref|ZP_02881321.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170144589|gb|EDT12750.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 300

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 127/274 (46%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+++L  F  VA   +FT AA QL +SQS++SR +  LE  +G+ L  R  R +  TE G
Sbjct: 3   DFNELAAFMRVAHERNFTRAAAQLGMSQSALSRMVRALEARMGVPLLTRTTRSVAPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++E     L+  + +P+G +RI TT       +   ++  L  YP+I+
Sbjct: 63  ERLLSSIGPRLREIEAELESLRAMTDRPAGSVRITTTDYAANEYVWPRVQTLLHQYPEIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+ D    D+  D  D  +RL   +    +  R    + M    +P YL +     + 
Sbjct: 123 IELVYDYGLSDLVADGYDIGVRLGDQVAKDMIAMRIAPDMTMSIVGSPEYLASRIVAKTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L +HN I     +P       W  +  R   + R+   L  N+   +++  + G G+A
Sbjct: 183 QDLTRHNCINL--RLPTMNSLLAWELSKGRRELQVRVEGQLTFNNVYQMVEAALGGFGLA 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +P  +V+   +   L  ++ED   P+F  +  Y
Sbjct: 241 YVPKKLVEPHVEAGRLAWVLEDWF-PTFVGHHVY 273


>gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151280992|gb|ABR89402.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 300

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 140/300 (46%), Gaps = 20/300 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  SGS + AA+QL LS+  +SR ++ LE   G +L +R  R L+LT  G+++ 
Sbjct: 7   MQVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTAAGAEML 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++       +  +      P G LRI  +   GQ+ L   + +++ LYP + + ++
Sbjct: 67  PRCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPGVTVDML 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  +  D AIR+ K +   +LI R+L        AAP YL    +P   ++L 
Sbjct: 127 VLDRVVNLVEERIDLAIRISKELD-PNLIARRLTVCRSVVCAAPAYLHEHGKPTQAEQLV 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            HN +T   +G +         WL   D+ P+       +  N   S++   + G+GIA+
Sbjct: 186 LHNCLTHSYYGSV---------WLLERDKLPVNVAVKGNISANDASSLLPAALAGAGIAM 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
           LP ++      +  L+ ++ +     F ++  Y         L+   +F+   F    DW
Sbjct: 237 LPTFLAAPYIRSGQLLPLLPEYHPQEFGLFGVYASRKHMPATLRTMLDFLAARFTDEPDW 296


>gi|87121646|ref|ZP_01077534.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86163178|gb|EAQ64455.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 294

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 127/277 (45%), Gaps = 18/277 (6%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR   +F  +A  GSFT  AEQ + S+S IS++I  LE ++G +L +R  R L LT  
Sbjct: 2   DKLRAIKLFVKLANLGSFTKVAEQTNTSKSMISKEIGRLEDDLGARLLHRSTRNLQLTHV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +   E+  KL+     + +      GKL+I   + LG   L     +F+   PDI
Sbjct: 62  GEGYLQRAIEILEKLDDADNFVSDLQHNVRGKLKINAPMALGITDLSVLFADFMHENPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +D+     D  +R       S+ + + L        A+P YL   +    
Sbjct: 122 ELDIHLGDESVDLVEQGFDLGLRASSRAIDSNYVGKPLTRFTYKVCASPEYLAKHKAINL 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSG 240
            Q+L +HN   +     K +    W      PI  G      L+VNS L +M     G G
Sbjct: 182 PQDLSEHNCFVYSYFQGKDV----W------PIEDGVAVKGNLKVNSTLFMMDAIKKGLG 231

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           +  +PD++ +   D+  +V ++ +   P  T+Y  YP
Sbjct: 232 LGFIPDFVCQKMIDSGEVVEVLAEANKPRLTLYALYP 268


>gi|332163045|ref|YP_004299622.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318604079|emb|CBY25577.1| transcriptional regulator, LysR family [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667275|gb|ADZ43919.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330859552|emb|CBX69894.1| putative transcriptional regulator [Yersinia enterocolitica W22703]
          Length = 300

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 130/281 (46%), Gaps = 6/281 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLISFLMVARERSFTKAAAKLGVSQSALSHSIRGLEERLELRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E+    L E   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  ERLANSLEPRFAEIESELDALSEMRARPAGNIRITAGEHAVDSVLWPVLKSFLAKYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  IRL + +    +  R    + M   A+P YL     P + 
Sbjct: 125 VEITVDNTLTDIVTGRFDAGIRLGEQVAKDMVAVRIGPDMSMAVVASPSYLAKYGIPTTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I     +P     + W      R +       L  NS    +   V+G G+ 
Sbjct: 185 ADLQHHRCINM--RLPTMGGLYAWEFEKEGRELKVRVDGQLTFNSIRQRIDAAVIGFGLT 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNT 280
           ++P+  VK    + NL+R++ED   P    Y  YP   ++T
Sbjct: 243 MVPEDAVKTEIASGNLIRVLEDWCEPFPGYYLYYPSRRQHT 283


>gi|293392952|ref|ZP_06637269.1| LysR-family transcriptional activator [Serratia odorifera DSM 4582]
 gi|291424486|gb|EFE97698.1| LysR-family transcriptional activator [Serratia odorifera DSM 4582]
          Length = 254

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 97/184 (52%), Gaps = 1/184 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F +VA  GS T AA++  L +SS+S++IS LE+ +G++L  R  R L LT  G +    
Sbjct: 10  LFALVAECGSLTAAAKRAGLPKSSVSQRISQLESTLGLRLLNRTTRQLNLTFAGERYLVH 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+    E   + LQ     PSG+LR++T   LG  LL     +F   YPD+ +++ + 
Sbjct: 70  CQEMLSAAERADLALQRLRDNPSGRLRVSTPAGLGATLLPWLATDFQRQYPDVSLEVSVS 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+  +  D A+R  KP Q SSLI R+L     +  A+P YL      +  Q+L  H
Sbjct: 130 DAMVDLVQEGFDVALRTGKP-QDSSLIGRRLGHAPRYLLASPAYLAQFPPIVHPQQLSLH 188

Query: 190 NLIT 193
             I 
Sbjct: 189 RCIA 192


>gi|171322258|ref|ZP_02911098.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171092419|gb|EDT37771.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 296

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 99/188 (52%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V  +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G    
Sbjct: 4   LHVFMSVVTAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQHYL 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQL 126
           + T   Y ++   +  L+E   +P G LR+ T + L ++L +   L  F   YP +++++
Sbjct: 64  QQTEPAYRQVMQARDALKEVRSEPGGLLRV-TALPLARSLVITPILAAFRARYPKVRLEI 122

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +N+ +DI+ D  D  IRL   +Q   +  R    +     A+P YL     P SI EL
Sbjct: 123 RYENELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPGYLARHGMPASIAEL 182

Query: 187 DKHNLITF 194
           ++H  I F
Sbjct: 183 ERHACIRF 190


>gi|167617739|ref|ZP_02386370.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257140399|ref|ZP_05588661.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 298

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 125/285 (43%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A +GSF  A   L LS   + + +  LET  G++L  R  R  +LTE G   +
Sbjct: 1   MAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  + +            P G LRI   I  G + L   L  ++  YP++QI L 
Sbjct: 61  ERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  IR+  P+  S LI R L    +   A+P YL     P    +L 
Sbjct: 121 LSDRIVDVVDEGYDAVIRI-APLADSGLIARPLAPYRLVLCASPAYLAEHGAPAEPADLA 179

Query: 188 KHNLITFG-DLIPKCME-DFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
            H  + F     P  +E  F         +   R+ S L VN+  ++    + G GI L 
Sbjct: 180 AHECLGFSYSGQPAALEWPFESAQGQQHSV---RVRSRLAVNNGAALRMAALDGLGIILQ 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P  +V+D+     LVR++     P+  ++  Y    + T KL++F
Sbjct: 237 PAELVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSF 281


>gi|114049260|ref|YP_739810.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113890702|gb|ABI44753.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 305

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 144/293 (49%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SFT A+  L LS++ +S  ++  ET +G +L  R  R + LT+ G   +
Sbjct: 8   MQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLTQDGISCY 67

Query: 68  RVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +   Y +LE+   +LQ + V  SG+LR+  +  + +NL+  +L +F+  YP I++
Sbjct: 68  ERCKNLLTDYQELESL-FQLQATQV--SGRLRVDMSTGIARNLVLPHLPDFIEQYPQIEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +DI  +  DC IR+   +Q   +I +K+    M    +P Y+    +P S++
Sbjct: 125 ELSSTDRKVDIVAEGFDCVIRVGS-VQQEGVIAKKIGYFKMLNCVSPSYIAKYGKPSSLE 183

Query: 185 ELDK-HNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240
           EL + H LI +   +      F +L+  +     +  P++  + VN+  +    C+ G G
Sbjct: 184 ELSQGHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKL--ITVNNADAYSAACLAGLG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   P+  V        L+ I+ D   PS  V   YP     + +L+ F  ++
Sbjct: 242 IIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVFMAWL 294


>gi|330949902|gb|EGH50162.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 297

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLQVARDQSFTKAATRLGVTPSALSHTMRGLEERMGLRLLARTTRNVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q+
Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W    D      R++     NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNLRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           +PD + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289


>gi|330807386|ref|YP_004351848.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375494|gb|AEA66844.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 303

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 127/262 (48%), Gaps = 13/262 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L++F  V   GS + AAEQ+  + S++SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQIFVCVIECGSISAAAEQVGQTPSAVSRTLSRLEAKLDTTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  +++  +  L      P+G+LRI        + +  ++ EF   YP
Sbjct: 61  EEGKYFFEQAKGILDQMDELEERLSSRQKNPAGRLRINAASPFMLHAIVPHIDEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ++L  ++  ID+     D AIR+   +  S+L  R L    +H  A+P YLK    P
Sbjct: 121 DIQLELNSNDLIIDLLEQSTDIAIRI-GTLTDSTLHARSLGCSPLHILASPAYLKQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W-LATV--DRPIGEPRISCLQVNSYLSIMQYCV 236
            S+ EL  H L+ F        E  N W L  V  DR + +P IS    +S  ++    +
Sbjct: 180 SSVAELAGHALLGFAQ-----NEGLNQWPLRHVHGDRWLIQPAIS---ASSGETVRHLAL 231

Query: 237 LGSGIALLPDYIVKDNPNLVRI 258
            G GIA L D++ +++    R+
Sbjct: 232 QGQGIACLSDFMTREDIRAGRL 253


>gi|227113195|ref|ZP_03826851.1| hypothetical protein PcarbP_09540 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 293

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V    S T AAE+L +S++ ++R ++ LE+ +G +L +R  R   LT  G    
Sbjct: 1   MKVFVTVVTHKSQTAAAERLDMSRAMVTRYLAELESWLGARLMHRTTRRFGLTPTGEACL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV +++E  + E +    +P+G LRI  +  L Q  L   L  ++  YP ++I LI
Sbjct: 61  LQCKEVLNRIELLEAESKVDETEPNGLLRITASSWLWQTHLSSALTAYMARYPAVKIDLI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +++  D  D AIR+   ++   LI +K  T H    A+  YL     P    +L 
Sbjct: 121 LGEQRLNLVEDSIDLAIRITSDLE-PGLIAKKFATCHTVICASAAYLTRNGTPEHPSDLT 179

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN +T           F W     +     P    L  N    +M   + G GIA LP 
Sbjct: 180 AHNCLTH-----VYSTKFEWQFRHQNELYSVPISGSLSTNEGNVLMDVALQGMGIAKLPL 234

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+     +N +L+ ++ D  +    +Y  Y      +  L+A  +F+
Sbjct: 235 YLAAPHLENGSLIHLLPDYKSHEMGIYGVYTSRQFMSKALRALLDFL 281


>gi|161506079|ref|YP_001573191.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867426|gb|ABX24049.1| hypothetical protein SARI_04266 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 303

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 130/286 (45%), Gaps = 11/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLAQYGAPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +        E         R I + R      N  ++++++   G+GIA +P  
Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPLM 236

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRN 288
            V D  N  R   +++ P +      VY  Y E  K   K++   N
Sbjct: 237 WVIDEIN--RSELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 280


>gi|121726627|ref|ZP_01679863.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147672094|ref|YP_001215024.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|262168889|ref|ZP_06036583.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|121630933|gb|EAX63313.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|146314477|gb|ABQ19017.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|227015702|gb|ACP11911.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|262022588|gb|EEY41295.1| transcriptional regulator [Vibrio cholerae RC27]
          Length = 301

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P+++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPEVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +T G +     +       ++ P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 AEHRCLT-GSVKRWSYQHKETKQALEVPVD----GDLQCKNGRVLVRAALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|260432709|ref|ZP_05786680.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416537|gb|EEX09796.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 292

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 131/295 (44%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  +E  + +KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHIDAIEARLKVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+      SG+L + T++     L+   L  F   +PD+ 
Sbjct: 63  EDLLRVAQATEDQFNQLVGRLKGRGDDVSGEL-VVTSLAALAPLVVPTLTAFQQDHPDLI 121

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +  ++   +    A  AIR    P Q  +++Q   +T  +  YA+  Y+     P  
Sbjct: 122 VRYLTGDRLFRLEYGEAHVAIRAGAAPDQPDNVVQ-PFMTQEVGLYASQDYIARRGLPEG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++   H  +   D        F+     + P       C   +   S+ +  + G+GI 
Sbjct: 181 VEDFPNHAFVGADD--ENSRAPFSRWLRANVPAEAITFRC---SDNFSVAEAVLAGAGIG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            +  +    +P L  +ME +   +  ++      L  T K++ F  F+  +ARDW
Sbjct: 236 FMARWEAARHPQLQEVMEPLPEWAGNLWLVTHVDLHRTAKVQTFLKFLKEQARDW 290


>gi|170768885|ref|ZP_02903338.1| putative HTH-type transcriptional regulator YcaN [Escherichia
           albertii TW07627]
 gi|170122433|gb|EDS91364.1| putative HTH-type transcriptional regulator YcaN [Escherichia
           albertii TW07627]
          Length = 309

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 153/300 (51%), Gaps = 29/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R ++LTE+G +L+ V 
Sbjct: 14  FALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNMSLTEEGQRLYDVL 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              + +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL  YP  +I+LI+D+
Sbjct: 74  VSAFGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHICEFLTRYPKTKIELIMDD 133

Query: 131 KDIDISMDYADCAIRLRKPIQS-------SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +I  +  D  IR  + +         S LI  KL+T+     A+P YL+    P + 
Sbjct: 134 GLSNIIAEGCDAGIRPGQGLDEHMTAVPVSPLI--KLITV-----ASPDYLRKYGIPETP 186

Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            EL  HN +     T G L P    +F++++  +             N   S+++  + G
Sbjct: 187 YELSNHNCLRLRHKTSGALSPW---EFSYISGNNEKFEIEASGRYIANDDESMIRMAING 243

Query: 239 SGIALLPDYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI    D+ +    D   L  I++D  V  P F +Y      ++   K++AF +F+  K
Sbjct: 244 AGIIQHLDFAIAEQIDAGKLQPILQDWAVSFPGFYIYVS--SRVRMPSKVRAFIDFMVEK 301


>gi|148975237|ref|ZP_01812161.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965161|gb|EDK30411.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 305

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 135/287 (47%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AEQ +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSKVAEQNNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  ILHGAKNVKQATQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+  D  D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLDNRFVDLVEDGLDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPMLPKD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RIS-CLQVNSYLSIMQYCVLGSG 240
           L +HN + +        E + +L + D          R+S     ++  ++ +  + G G
Sbjct: 183 LVQHNCLQYAYQTTGASE-WQFLHSKDGCTDNDKYIVRVSGSFSTDNATALRKAALGGHG 241

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           +A +P  +V     N  LV I  D++     +Y  YP   +   K+K
Sbjct: 242 VAYVPRCLVYHDIRNGQLVDIFPDLVGKKLGIYAVYPFTRQPPNKIK 288


>gi|222035231|emb|CAP77976.1| Uncharacterized HTH-type transcriptional regulator [Escherichia
           coli LF82]
          Length = 299

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 67  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIRT-GALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|86751608|ref|YP_488104.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86574636|gb|ABD09193.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 308

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 134/265 (50%), Gaps = 8/265 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F      GSF+ AA++L L Q ++S++I+ LE E G +LF R+ R LT T +  +
Sbjct: 5   DCLRAFVKTMEGGSFSGAAKELGLGQPAVSKRIALLEKEFGSQLFMRNTRKLTPTREAHR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++ +  +    +E  +  + E+   P+G LR+      G++ +   ++++L  YP +++ 
Sbjct: 65  IYDLARQALSCIEMARASIAEAPAVPTGMLRLGVPSSFGRHYIMPVIEQYLRDYPQVKVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    + +++  D  + A+R+   ++SSSL  R++  +     A P YL+   +P    +
Sbjct: 125 IRFSEQTVNLVEDGIELALRIGD-LESSSLKARRIGLVRRFLVATPAYLRRQPQPQLPGD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L   + I +  L P     F+  + + R + +   S + V+   ++ Q  +   G+A+LP
Sbjct: 184 LKNLHCIAYARLSPANQWAFD--SELGRHVVQISASIM-VDDADAMKQAVLQNLGVAILP 240

Query: 246 DYIVKDNPNLVRIME-DVITPSFTV 269
            +   D    VR  E +++ P F V
Sbjct: 241 AWSAADA---VRSGEMEIVLPEFAV 262


>gi|239500869|ref|ZP_04660179.1| transcriptional regulator [Acinetobacter baumannii AB900]
          Length = 298

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 140/292 (47%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L+ FY+   VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+ 
Sbjct: 2   DRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPDI
Sbjct: 62  GQRILPECQNLLLDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL   +   D+     DC +R+ + + +SSLI R +  + M   A+P YL++   P  
Sbjct: 122 HLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASPQYLQDYGIPEQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + +L++H LI +   + +   +F +        G   + S L VN+  + +     G GI
Sbjct: 181 LNDLEQHKLINYAGAVGEKQGEFIYQG------GTVMMDSALSVNNTEAYIAAACAGLGI 234

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y V+D      LV ++     PS  +   YP       +L+ F +++
Sbjct: 235 IQLPYYDVQDKIEQGILVEVLSAYSAPSLPLNILYPNRSYIPKRLEVFMSWV 286


>gi|91781334|ref|YP_556541.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91693994|gb|ABE37191.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 290

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 141/291 (48%), Gaps = 17/291 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ +R F  VAR G+ + AA  L +  +++SR++S LE E+  +L  R  R   LT  
Sbjct: 2   FDWENVRHFLAVARIGTLSGAARSLKVDHATVSRRLSALEDEIKTRLIERLPRACKLTLI 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++  +   +       +  +  S    SGK+ ++    L  + L  +L +F  ++P +
Sbjct: 62  GQRVFELAQGMEEDAYAIERFVDASRSPLSGKVSLSAPPVLVAHFLAKHLADFRRVHPGV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ +  + + I +S   AD A+RL +P + +S++ RKL  +    YA+  Y  +   P S
Sbjct: 122 QLSVSGEARQISLSRREADVALRLVRPEEGTSVV-RKLGRMSFDLYASRDY-PHLHNP-S 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSG 240
             E   ++   F D     M    WL +V R  G P I+C    +N +L+  Q    G+G
Sbjct: 179 AWEFISYD-AGFTD-----MPQQKWLMSVAR--GRP-IACEISDINGHLAATQ---AGAG 226

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +A LPD++   +  L R+  D    S  ++      L+ +  ++A  +F+ 
Sbjct: 227 VAGLPDFLADTDAKLQRVAYDGEPFSRDIWLAVHRDLRRSPHVRAVMDFLL 277


>gi|66045593|ref|YP_235434.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256300|gb|AAY37396.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|330973190|gb|EGH73256.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 301

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 130/293 (44%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LTE G+
Sbjct: 4   FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLTEFGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    EV   +  ++   +++   P+G LRI   +  G  +L   L EF   +P++++
Sbjct: 64  AYYERCLEVLGLVAESEQLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPEVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L N+ +D+  +  D AIRL    +SS LI R L    +   AAP YL     P   +
Sbjct: 124 DLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTPTHPE 183

Query: 185 ELDKHNLITFGDLIPKCME----DFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L +HN + F    P   E       W  T  D  +       +  N+   + Q    G 
Sbjct: 184 DLREHNCLAFA--YPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARAGM 241

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+ +LPD +V+ +     L  +  D   P   +   Y +      KL++F  +
Sbjct: 242 GVVMLPDALVQRDLQEGRLFALFPDYHLPRRPMNLLYVQDRYRLPKLRSFVEY 294


>gi|74312300|ref|YP_310719.1| putative LysR type transcriptional regulator [Shigella sonnei
           Ss046]
 gi|82544216|ref|YP_408163.1| transcriptional regulator LYSR-type [Shigella boydii Sb227]
 gi|157155739|ref|YP_001462638.1| LysR family transcriptional regulator [Escherichia coli E24377A]
 gi|209918573|ref|YP_002292657.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|218553887|ref|YP_002386800.1| putative nucleic acid-binding regulator [Escherichia coli IAI1]
 gi|256018419|ref|ZP_05432284.1| putative nucleic acid-binding regulator [Shigella sp. D9]
 gi|260867777|ref|YP_003234179.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O111:H- str. 11128]
 gi|293433692|ref|ZP_06662120.1| HTH-type transcriptional regulator ycjZ [Escherichia coli B088]
 gi|300818949|ref|ZP_07099153.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300822502|ref|ZP_07102641.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300904981|ref|ZP_07122799.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300926719|ref|ZP_07142494.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|301307033|ref|ZP_07213071.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|301326934|ref|ZP_07220226.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|307309913|ref|ZP_07589563.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|309796945|ref|ZP_07691346.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|331677116|ref|ZP_08377812.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332279471|ref|ZP_08391884.1| transcriptional regulator [Shigella sp. D9]
 gi|73855777|gb|AAZ88484.1| putative transcriptional regulator LYSR-type [Shigella sonnei
           Ss046]
 gi|81245627|gb|ABB66335.1| putative transcriptional regulator LYSR-type [Shigella boydii
           Sb227]
 gi|157077769|gb|ABV17477.1| transcriptional regulator, LysR family [Escherichia coli E24377A]
 gi|209911832|dbj|BAG76906.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|218360655|emb|CAQ98216.1| putative nucleic acid-binding regulator [Escherichia coli IAI1]
 gi|257764133|dbj|BAI35628.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O111:H- str. 11128]
 gi|291324511|gb|EFE63933.1| HTH-type transcriptional regulator ycjZ [Escherichia coli B088]
 gi|300403130|gb|EFJ86668.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300417295|gb|EFK00606.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300524918|gb|EFK45987.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300528410|gb|EFK49472.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300837751|gb|EFK65511.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|300846405|gb|EFK74165.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|306909631|gb|EFN40125.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|308119473|gb|EFO56735.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|315060583|gb|ADT74910.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|315254372|gb|EFU34340.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|320184454|gb|EFW59261.1| LysR family transcriptional regulator YcjZ [Shigella flexneri CDC
           796-83]
 gi|320199369|gb|EFW73960.1| LysR family transcriptional regulator YcjZ [Escherichia coli
           EC4100B]
 gi|323179708|gb|EFZ65269.1| hypothetical protein ECOK1180_1453 [Escherichia coli 1180]
 gi|323185504|gb|EFZ70865.1| hypothetical protein ECOK1357_0866 [Escherichia coli 1357]
 gi|323378855|gb|ADX51123.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323947719|gb|EGB43722.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|324117476|gb|EGC11382.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
 gi|331075805|gb|EGI47103.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332101823|gb|EGJ05169.1| transcriptional regulator [Shigella sp. D9]
          Length = 299

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 129/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|226952233|ref|ZP_03822697.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|294648821|ref|ZP_06726278.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226837071|gb|EEH69454.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|292825313|gb|EFF84059.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 293

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 144/303 (47%), Gaps = 20/303 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L+ F V+AR+ + T AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLQFFLVLARTKTLTSAARIIGVEHSTVARRIQALELALGTTLFKREASGYELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L     +V  ++E   +++++      G++RI T    G   L   L EF + YP
Sbjct: 61  FEGLAL---VPQV-EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIRYP 116

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL N    
Sbjct: 117 LLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKIYGSKNYLANTPPI 175

Query: 181 LSIQELDKHNLITF-GDLI--PK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
             +++L +H  + +  DL+  P+  C+E      T +           + +S L+     
Sbjct: 176 RRLEDLTQHRFVNYIDDLVYSPELYCLERLPLKLTAN----------FRSSSILAQQIAV 225

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             G+G+A+LP ++  D P L  ++ + +  + T +      L++  ++K   +++  +A 
Sbjct: 226 SAGAGLAILPKFLADDKPELETVLAEQVRFNHTFWMLTFVDLQHEPRIKLVWDYLRKQAD 285

Query: 296 DWK 298
            ++
Sbjct: 286 QYQ 288


>gi|167033101|ref|YP_001668332.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859589|gb|ABY97996.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 298

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 143/290 (49%), Gaps = 10/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  +GSFT AA++L +S+ S+SR++  LE  +G++L  R  R L  T  G 
Sbjct: 8   YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++  + ++   +    G LR++  +    + L   L EFL L+P + +
Sbjct: 68  HYYQSALRLLGEVQQVEHDISGQAQALRGTLRLSAPLSFAMSHLGCLLTEFLQLHPLVDV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++  +     A+P YL+    P+  +
Sbjct: 128 EVDLSDRAVDLIGEGYDLALRI-GALEDSSLIARRIANVERVYCASPAYLQARAVPVIPE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ + +G           W           +++  ++ N+   +    + G G+  
Sbjct: 187 DLAGHDCLPYGH-----SRQVQWQFRQGGKAQAIQVTGRMRANNGELLRDAAIAGMGVTY 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +IV     +  LV ++E+   P+  +   YP+  +    ++ F +F+
Sbjct: 242 LPTFIVGQALADGRLVSVLEEWTPPALQLSAVYPQHRQVARPVQGFVDFL 291


>gi|115351385|ref|YP_773224.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|172060423|ref|YP_001808075.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115281373|gb|ABI86890.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
 gi|171992940|gb|ACB63859.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 313

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD+ ++L
Sbjct: 66  LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPDVHVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+     P +  +L
Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVDAHGAPHTPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
           ++H  I  G + P    D  W   +  P G+  I       +VN   ++      G GI 
Sbjct: 186 EQH--ICLGMVAPGFHFD-EW--ALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP Y       + N+VR++ +  +    +Y  YP       K++ + +F+
Sbjct: 241 GLPLYSAIGGLRSGNIVRVLPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 291


>gi|251790047|ref|YP_003004768.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538668|gb|ACT07289.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 300

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 132/266 (49%), Gaps = 12/266 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L+LT +G + +   
Sbjct: 10  FVRTAETGSFSAAGRDLGLGQPNVSRHVATLEEHLQTRLLHRSTRKLSLTPEGERYYLEA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   +E ++   +E +V P+G LR+A    L    L  ++ +FL  YP++ ++L +++
Sbjct: 70  RRILEAVEESESSFRE-NVTPTGLLRVACPTALAHTFLVPHIPDFLERYPELTLELQIND 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + I++  + A+ AIR+   ++ S++  R+L        A+  YL     P + ++L KH+
Sbjct: 129 RYINLVDEGAELAIRIGH-LEDSAMRARRLGMYERVCVASNKYLAKRGTPNTPEDLKKHD 187

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + +  L       F       + I  P    L+VNS  ++ ++   G GIA  P+++ +
Sbjct: 188 CLIYTLLTTGATWRF-------QDINVPISGRLRVNSPEAVQKFVNAGVGIAQGPEWLFE 240

Query: 251 D---NPNLVRIMEDVITPSFTVYFCY 273
           +   N NL  ++ D   P   +   Y
Sbjct: 241 EGLANGNLQLLLTDYTAPPVPIQAVY 266


>gi|118592757|ref|ZP_01550146.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118434527|gb|EAV41179.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 300

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 136/292 (46%), Gaps = 10/292 (3%)

Query: 6   DKLRVFYVVARSGS---FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L      AR+GS   +T AA  L +S S+IS+ +  LE ++G+ LF R  R +TLT +
Sbjct: 8   DRLTGLLAFARAGSLGSYTAAARSLSVSPSAISKSVQRLERQLGVPLFNRTTRSITLTNE 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  LH    ++    E  +   + +  +P+G LRIA +  +G +++   L  F   +  +
Sbjct: 68  GRDLHERALKLLRDAEEIEQAAKAARSEPAGTLRIAASFPIGLHVIAPLLPVFRARHQKV 127

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L++  +D+  +  D A+R+   +  S L+ RKL    +  YA+P YL     P  
Sbjct: 128 SIDLRLNDHRVDLIEEGIDLAVRIGD-LPDSRLLSRKLSPHRLCCYASPTYLAASGTPSH 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  +  +          + F W   + DR +     S + V++  +++     GSGI
Sbjct: 187 PDELQSYETVNL--RYQSSGQLFRWPFRIGDRDVEILPSSSIVVDASEAVISTVAAGSGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +   ++        +LV ++ +       +   +P++ +    ++AF N +
Sbjct: 245 GMATSFMATSWVKRGDLVPVLSEFAVERHNITAVWPQSRRTNPAVRAFLNML 296


>gi|167644542|ref|YP_001682205.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167346972|gb|ABZ69707.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 301

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 135/290 (46%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +LR F  VA+  SF  AA +L ++ S++S  I  LE  +G+KL +R  R +  TE G
Sbjct: 6   EFGELRAFAAVAQERSFRRAATRLGVTPSALSHVIRALEERLGVKLLHRTTRSVAPTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L         ++E    E+   S  P G+LR+       + ++   L +F+ LYPDI 
Sbjct: 66  AALLGRLVPAMTEIEHAVSEVGAFSDHPRGRLRLNLPRLAAEAVVLPKLGQFVQLYPDIV 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L++D+   DI  +  D  IR    + S     R    + +   A+P YL +   P + 
Sbjct: 126 LDLVIDDSMADIVAEGFDAGIRAGAHVHSDMTAVRLSPDLRVAVVASPTYLASRGAPSTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L +H  I +     +    + W       + E RI + + VN    I ++ + G G+A
Sbjct: 186 QDLREHRCINY--RWSQAGAVYRWGFARADEVLEVRIEAAITVNDTNLITRFALDGLGLA 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + + +V ++     LVR+++D   PS   +  Y      +  L+A   F
Sbjct: 244 YILEDVVAEHLAAGRLVRVLDDWCRPSSGFHLYYSGRRHMSAPLRAMIEF 293


>gi|330950566|gb|EGH50826.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 298

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 21/291 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA + SFT A ++L +S S I + I  +E  +G++LF+R  R + LT +GS     
Sbjct: 9   VFVLVAETRSFTQAGKRLGISSSGIGKSIGRMEESLGVRLFHRSTRSIALTLEGSIFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LE  ++EL  +   P G+LRI  ++ L   L+   + +F+  YPDI++ +   
Sbjct: 69  CRRILSELEAAEMELINARDLPRGRLRI--SLPLVSGLVMPVIIDFMRTYPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P    +L +H
Sbjct: 127 DRMVDIIEEGFDVVLRTGDP-ADSGLMSKRMGSFQLRIVGAPDYFARHGIPRHPGDLSQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQV------NSYLSIMQYCVLGSGIA 242
             +      P   +  +W      P+  EP +  L++      N+   ++     G GIA
Sbjct: 186 ACLLHK--FPSSGKFEHW------PLRREPGVDDLELPQAMVCNTTEILVDVARAGLGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPD+++     +  L+ ++ D    + T    +P +   + +L+ F +F+
Sbjct: 238 CLPDFMISSAVRDGELIPVLADYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288


>gi|160895718|ref|YP_001561300.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361302|gb|ABX32915.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 337

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 141/298 (47%), Gaps = 6/298 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++++F  VA   SFT AA+ + L ++S+S+ +  LE  +G +L +R  R + LT+ G  
Sbjct: 34  EQMQIFSRVAEMASFTRAADSMGLPKASVSQAVQQLEARLGTRLLHRTTRRVQLTQDGQA 93

Query: 66  LHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +    ++   ++  Q + Q++   P  GK+R+  T  L ++++   L + L  +P +++
Sbjct: 94  CYERCQDLLADVDEFQGQFQQAGDAPLQGKVRLDMTTGLARHVVMPLLPQLLQSHPALEL 153

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L    + +D+  +  DC +RL  P+    L+ R L  + +   A+P Y++    P ++Q
Sbjct: 154 ELSCTERRVDLVREGFDCVLRL-GPVDEPGLVARPLGLVALATCASPGYVQAHGLPATLQ 212

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+ +   +      F +     +P   P    L VN+  + +  C  G G+  +
Sbjct: 213 DLGGHRLVHYQRTLGARPLGFEY-EEDGQPRYLPMAGALTVNNAEAYLAACQAGLGLIQV 271

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           P   V+   D   LV ++     P   +Y  Y +  +   +++   +++      W  
Sbjct: 272 PRLAVQPLLDAGELVEVLPRHPPPPMPLYLIYAQRRQLPRRVRVLMDWLAEAVLPWTL 329


>gi|71278909|ref|YP_268060.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144649|gb|AAZ25122.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 318

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 140/294 (47%), Gaps = 16/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F      G F  AA  L LS S++S+ ++ LE  + IKLF R  R + LT+ GS+  
Sbjct: 7   LKLFVNAVDHGGFAAAANHLGLSASTVSKGMARLEDNLSIKLFNRSTRQVHLTDSGSRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +LE  + +L++++  P G++++   +  G+  +   L+EF  LYPDI + + 
Sbjct: 67  ITARRIVLELEQCEQDLKQTNDLPCGQVKVNLPVSYGRLYVMPLLQEFTQLYPDITLDVS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  +DI     D  IR  K +    L+ R L  I     A+P Y+     P    E  
Sbjct: 127 FNDSYVDILEQGIDLTIRTGK-LDDQRLVARMLSPIDFILCASPAYIAANDFPACAAEYS 185

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H+ I F     G L+P  +++ + + + D   G   I    VN   ++ + C  G G+ 
Sbjct: 186 QHSWIRFKYPQSGRLMPITVDEGHGVESYDP--GSQYI----VNDGEALAELCAQGLGLT 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP +I +D   + ++V I    +  S  VY  YP+      K+K    ++ +K
Sbjct: 240 QLPHFIARDWLKSKSIVPI-SSFLRSSEGVYCVYPKREFLPTKVKVLIEYLLMK 292


>gi|33596048|ref|NP_883691.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33601440|ref|NP_889000.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33573051|emb|CAE36693.1| probable LysR-family transcriptional regulator [Bordetella
           parapertussis]
 gi|33575876|emb|CAE32954.1| probable LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 306

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 27/300 (9%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +   GSF+ AA  L + +++ +  I  LE  +G +L  R  R +  T  G 
Sbjct: 4   FDSLQLFTRIVELGSFSRAAAALDIPRATATHAIKQLEARLGARLLDRTTRHVRATPDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V  +L+  Q  LQ  +  P G LR+         ++   + +F   YP I +
Sbjct: 64  AFYERCVHVLSELDDAQSSLQRVASNPRGLLRVDMHSTHATKIVLPRIDDFRARYPGIDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC IR   P + SSL+ R+L  +     A+P YL     P    
Sbjct: 124 AVSGGDRLVDLVREGIDCVIRAGNP-RDSSLVARRLAVMPQVICASPEYLAAFGAPRHPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPI-----GEPRISCLQVNSYLSIMQ-----Y 234
           EL  H ++ F          F   A VD P+     GE  I    +N ++S+        
Sbjct: 183 ELAAHRVVKF----------FAASAAVDYPLELRIGGE--IRAFALNGWISVSDAENYVV 230

Query: 235 CVL-GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           C L G G+  LP + V+D+     LV ++ D  +P   V   YP     + +++ F +++
Sbjct: 231 CALRGCGLIQLPRFHVEDDLRAGRLVEVLSDWPSPDLPVSALYPSHRHLSPRVRVFVDWL 290


>gi|27379132|ref|NP_770661.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27352282|dbj|BAC49286.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 297

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 141/301 (46%), Gaps = 25/301 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R+F  +    SFT AA  L + +S+ S  + GLE+ +G +L  R  R +T T  G 
Sbjct: 4   FDAMRLFVRLVERQSFTAAAADLGIPRSTASEVLRGLESRLGARLLDRTTRHVTPTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +  ++E  +  ++++  +P G LRI     L +  +  +L  FL  YP + +
Sbjct: 64  DYYRRCVAILAEVEEAETAMRDA--RPRGLLRIDAHPLLTRTFILPHLPAFLARYPQLDL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+   ++ +D+  +  DC IR  +P + S +I R+L TI     A+P YL +   P +  
Sbjct: 122 QIGQGDRLVDLVREGIDCVIRSGEP-EDSGMILRRLGTIAEITVASPAYLASHGVPRAPD 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            LD H ++ F     GD++P        L  V  P      S ++VN+  ++     LG 
Sbjct: 181 TLDGHQMVAFVSSRTGDVLPLEFSVPGALHHVVLP------SRVRVNNSDTMADLARLGF 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+A  P Y   D+     LV ++ D   PS T       AL    +  A R  +FL   D
Sbjct: 235 GLAQAPRYRFADDLASGALVEVLAD-YPPSPTPL----SALYLQNRQPALRLRVFL---D 286

Query: 297 W 297
           W
Sbjct: 287 W 287


>gi|218691525|ref|YP_002399737.1| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|218429089|emb|CAR10033.2| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli ED1a]
          Length = 309

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ IKL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQIKLLNRSTRSIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +        E         R I + R      N  ++++++   G+GIA +P
Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240


>gi|191170396|ref|ZP_03031949.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|300976740|ref|ZP_07173559.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|190909204|gb|EDV68790.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|300308477|gb|EFJ62997.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|324014187|gb|EGB83406.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
          Length = 323

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|86358949|ref|YP_470841.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86283051|gb|ABC92114.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 351

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 138/288 (47%), Gaps = 8/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G+FT AA+ L + +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 55  MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 114

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++  +LE     L  S   PSG+LRI  +      ++   L +F   YPDI++ L 
Sbjct: 115 ERAAQLISELEELDGSLSNSQSLPSGRLRIEMSGAFADAIVVPALCDFYQRYPDIRLDLG 174

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D  ++  DCA+R   P    SLI R++  + +   A+P Y++    P   ++L+
Sbjct: 175 VSDRTVDYLVENVDCALRAGTPT-DQSLIARRVSEMDLITCASPSYIQKFGMPERPEDLE 233

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLP 245
             H  + +          F +    +     PR  C+  VN   + +   + G G+A +P
Sbjct: 234 ATHYSVNYFRAQNNRTLPFEFRRGNEMVETTPR--CIASVNDSRTYLTAALTGLGVAQVP 291

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ ++      LVR++ D       +Y  YP     + K++ F +++
Sbjct: 292 TFMAREPMRRGELVRVLPDWRRDPVPLYVVYPPNRHLSNKVRVFVDWL 339


>gi|83748573|ref|ZP_00945593.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207743288|ref|YP_002259680.1| hypothetical protein RSIPO_01457 [Ralstonia solanacearum IPO1609]
 gi|83724781|gb|EAP71939.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206594685|emb|CAQ61612.1| hypothetical protein RSIPO_01457 [Ralstonia solanacearum IPO1609]
          Length = 309

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + L   +  +    VK SG LR+      G+  +   + +FL  +PD+ I L
Sbjct: 66  LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL+    P  ++ L
Sbjct: 126 DLGDRIVDLVNEGFDCAIRL-GDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEHL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             HN + FG           W+   D      ++   ++      + ++C+ G G+A   
Sbjct: 185 AGHNCLAFG---ASANVQRGWVFQQDGKTVTVKVGGTMECTDGAVLREWCLQGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289


>gi|300704271|ref|YP_003745874.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299071935|emb|CBJ43264.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 309

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + L   +  +    VK SG LR+      G+  +   + +FL  +PD+ I L
Sbjct: 66  LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL+    P  ++ L
Sbjct: 126 DLGDRIVDLVNEGFDCAIRL-GDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEHL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             HN + FG           W+   D      ++   ++      + ++C+ G G+A   
Sbjct: 185 AGHNCLAFG---ASANVQRGWVFQQDGKTVTVKVGGTMECTDGAVLREWCLQGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289


>gi|300717464|ref|YP_003742267.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299063300|emb|CAX60420.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 305

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 143/295 (48%), Gaps = 18/295 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   + +F  +   GS + A  QL LS + +S++++ +E ++G++LF+R  R ++LT++G
Sbjct: 4   DIRDIALFNAIVACGSLSAAGRQLGLSLAVVSKRLTQMEQQLGVRLFHRTTRHVSLTDEG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +  +L++ +  L     K SG LRI ++  +GQ  L   +  F+  +  ++
Sbjct: 64  LVFTEHALRLQQELDSIESALSSRQGKASGTLRITSSHSMGQRWLSPIVTRFMQQHQSVK 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ ID++    D AIR    +  S L+ R+LV       A+P YL+   EPLS+
Sbjct: 124 LHLHLSDRVIDLAASGYDLAIRY-GALADSRLVARELVPNQRVLCASPAYLQQAGEPLSL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLG 238
           +EL  H+ I  GD  P     F          GE + S        VN+  +     + G
Sbjct: 183 EELSAHSCIISGD-NPVTEWTFG--------AGESQRSVQINARFHVNTGEAAHGLALHG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +GI +   + V D+     LV+++ D   P+  ++  +    +   +++ F +++
Sbjct: 234 AGIVVKSVWDVADDLKSGKLVQVLTDHPLPAAPLHAIWLNGKQQPPRVRLFVDYL 288


>gi|315500606|ref|YP_004089408.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
 gi|315418618|gb|ADU15257.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 297

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 122/258 (47%), Gaps = 5/258 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  L +F  VAR+G F   A++  L  S++SR I+GLE E+ ++LF R  R L+LTE G
Sbjct: 2   DFQALDLFVAVARAGGFAAVAKERFLDPSTVSRIIAGLEAELNVRLFQRTTRSLSLTEAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        +  ++     E    + +P+G LR+  ++  G   +   L +F  +YP ++
Sbjct: 62  ALYLARMEPLLDEMRRAAAEASNVNAEPTGVLRLTASVAFGVQQIAPLLGDFCAVYPRLK 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +  + ++D+  +  D AIRL  P     L+  +L +   H  A+P Y+         
Sbjct: 122 LDCVFTDANLDLVQERMDLAIRL-APAIEGDLVATRLFSTRYHVVASPDYIARAAPIGEP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +  G    +    F         + E  +   + +++ L++    + G G A
Sbjct: 181 RDLLTHRCLLLGLRAFRSTWKFK---NAQGALEEVSVDGDVVISTPLALRAAVLAGGGPA 237

Query: 243 LLPDYIVKDNPNLVRIME 260
           LL  +++ D+    R+++
Sbjct: 238 LLSGFLIADDLRAGRLVD 255


>gi|116255589|ref|YP_771422.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260237|emb|CAK03341.1| putative LysR family transcription regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 317

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 139/302 (46%), Gaps = 14/302 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT  
Sbjct: 7   FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++      ++  + E  + +L   S+   G +R++             L +F   +P +
Sbjct: 67  GTRFVETAEKMEQETERLRADLAAGSMAQRGLVRLSAPEGFANFFFATVLPQFAAQHPHL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+   + + +S   AD ++ L +P +  +    KL   H+  Y +  YL        
Sbjct: 127 SLELVTIQQIMSLSRKEADLSVVLDEP-KGGAYFAEKLTDYHLQVYGSRDYLAKAAPITC 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLGS 239
            ++L  H  +++       +E+  +   +D  +G+  PRI    Q +S  + +     G 
Sbjct: 186 REDLLGHPFVSY-------IEEMIFAPGLDY-LGDVHPRIKPQFQSSSIFAQLTATRNGL 237

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDW 297
           G+ +LP +     P LVR++ + I      +      LK   +++A  +F+   ++  D 
Sbjct: 238 GLCILPYFFASRYPELVRVLPEEIDLKRHYWITCHRDLKQAPRVRAVIDFLREAVRGEDT 297

Query: 298 KF 299
           +F
Sbjct: 298 RF 299


>gi|87119070|ref|ZP_01074968.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86165461|gb|EAQ66728.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 298

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 138/288 (47%), Gaps = 11/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F  +A++ + + A ++L LS +  S  I+ LE  +G++L +R  R ++LTE+G  
Sbjct: 4   DHLRLFVRIAQTHNISQAGQELGLSPAVASSHINKLEAGLGVRLIHRTTRKVSLTEEGIA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V   +E  Q  +      PSG LR++     G+  +   L +F+  YP+I++ 
Sbjct: 64  FFPHAEDVIASVEAAQASVGAGKSTPSGTLRVSAPASFGRMHVLPALTDFMARYPEIKVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+     D AIR  + ++ SSLI +KL   +    A+P Y+K    P +   
Sbjct: 124 LKLSDTIVDLVEGGFDIAIRNSR-LKDSSLIAKKLANDNRILCASPSYIKKYGLPNAPAA 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L++H+ IT   L   C +      T   P+        + ++  ++    V G GI +  
Sbjct: 183 LNQHHCITLIGLEDWCFD------TPQGPVNIKTKGQFRTDNGEAVRDASVNGIGITIGS 236

Query: 246 DYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289
            + V     +  LV IM +    S T ++  YP +     K++AF ++
Sbjct: 237 KWSVYQHLKSGELVHIMPEFPLISETAIWAVYPSSRLLAPKVRAFIDY 284


>gi|259415454|ref|ZP_05739375.1| LysR family transcriptional regulatory protein [Silicibacter sp.
           TrichCH4B]
 gi|259348684|gb|EEW60446.1| LysR family transcriptional regulatory protein [Silicibacter sp.
           TrichCH4B]
          Length = 310

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 116/254 (45%), Gaps = 11/254 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L+    VAR GSF  AA  L    S+ISR ++  E  +G++LF R  R L +T  
Sbjct: 1   MDISQLKTLLTVARLGSFAAAARALDQDPSAISRVVATAEARLGVRLFERSTRRLAVTGV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       + +  +L+    E + +   P+GKLRI  ++  GQ  L   L EF   YP+I
Sbjct: 61  GRGYLDRIAPLVEELDLAAEEARSARRAPTGKLRITASVAWGQECLVPLLPEFRSRYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++LI  +  +D+  +  D AIRL  P     L+   L        A+P YL       S
Sbjct: 121 ELELIFTDTYLDLLAEGIDLAIRL-APAPQGDLVSTHLRCTRYLVCASPDYLARAGHLPS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLG 238
              L+ H+ +     +P    D  W      P G+    P    + + S L++ Q   +G
Sbjct: 180 PAALNGHDCLR----MPLRGFDGTW--RFCSPSGQEETVPVTGKVVITSPLALRQAARVG 233

Query: 239 SGIALLPDYIVKDN 252
            G  LL D++V D+
Sbjct: 234 LGPTLLADWLVADD 247


>gi|227326291|ref|ZP_03830315.1| putative transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 295

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 136/289 (47%), Gaps = 25/289 (8%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA    F+  + +L +S SS+ + ++ LET +G++LF+R  R L LT +G K    
Sbjct: 10  IFVRVAERLGFSAVSRELGVSPSSVGKAVARLETRLGVRLFHRSTRTLALTAEGEKFLER 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++E  ++E+ ++S  P GKLR+  ++    +L +  + +F+  YP +++ L   
Sbjct: 70  CRRILSEVEAAELEMTQASEMPHGKLRV--SLPRHSSLFEPVIADFMRRYPAVELDLDFS 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIR    +  S L +R+L T       AP Y K   +P    +L  H
Sbjct: 128 DRLVDVIGEGFDAAIRT-GTLADSGLKRRQLGTFRRVLVGAPEYFKEHGQPQHPMDLQAH 186

Query: 190 NLITF-----GDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +     G L    +P   E+     T D P+       L  NS    +       G
Sbjct: 187 ICLHYRFPSSGRLEQWPLPLAAEE----NTYDLPL------SLVCNSIEMRIHLARQAQG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA LPD+ V     +  L  I++D    S  ++  +P +   + KL+AF
Sbjct: 237 IACLPDFSVAKYLRDGRLQTILDDFTQNSSPMWILWPASRDLSPKLRAF 285


>gi|330985317|gb|EGH83420.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 305

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMIVIPALPEFARRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+ C  PL++ 
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLDSLTQITCASRDYLQRCGTPLNLP 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L +H +I +            ++A    VD+ +       + VNS    +  C  G G+
Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMAGGVEVDQALA----CSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V     +  LV ++     P   +   YP   + + +++ F +++
Sbjct: 239 IQVPRYHVAAQLRSGVLVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290


>gi|197295403|ref|YP_002153944.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195944882|emb|CAR57489.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 301

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 135/304 (44%), Gaps = 22/304 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++ G+
Sbjct: 4   FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V  +L      + +    PSG LR++  +  G   L  ++  F+  +P + +
Sbjct: 64  VYYARAKRVLGELADADALVADRGDAPSGPLRVSVPVAYGLRRLAPHVAAFVARHPKLDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+     D AIRL     ++ ++ R L T   +  A+  YL     P +  
Sbjct: 124 DLQLTDERVDLVSARIDVAIRLGDAAPTAEVVARPLGTFRRYVVASRAYLDAHGTPATPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------G 238
           EL  H  + F   + +    F         +G PR + + V   L      VL      G
Sbjct: 184 ELVDHACLRFHFGVDQQTWTF---------VGAPRTTQVVVTGRLKSNHSEVLREAALDG 234

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDV-ITPS---FTVYFCYPEALKNTGKLKAFRNFIF 291
           +GIALLPD++V    +   L R+ +   +TP      +   Y    + + ++ AF +F+ 
Sbjct: 235 AGIALLPDWLVDTDLEAGRLQRLFDQYDVTPGSARAVITALYLPNQRGSKRVTAFIDFVE 294

Query: 292 LKAR 295
             AR
Sbjct: 295 SLAR 298


>gi|188993248|ref|YP_001905258.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735008|emb|CAP53220.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 311

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 142/297 (47%), Gaps = 25/297 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA    F+ AA+ L  S ++I+RQ++ LE  +G +L  R  R ++LT  G+ 
Sbjct: 5   DAMRVFVAVAERSGFSAAADALDRSTANITRQVAALEQRLGTRLLNRTTRRVSLTSAGTA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   L+  +  +   ++ PSG LR+   +  G   L   L  F   +P +++ 
Sbjct: 65  YYQRCLQLLADLDDLEATVGAQALAPSGLLRVNAPVSFGIVQLAALLPGFRARFPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L ++ +D+  +  D A+R+ R+P  + +LI R+L T+ +   AAP YL     P    
Sbjct: 125 LSLSDRLVDMVEEGFDVALRITRQP--APTLIARQLGTVRLVPCAAPAYLARAGTPQHPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRI---SCLQVNSYLSIMQYCV 236
           +L  H          +C+  +++  T D      P G+  +     L+ N+   +    V
Sbjct: 183 DLAGH----------ECLL-YHYAPTGDDVRFHGPDGDVDVRLRGGLRANNGHVLSAAAV 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+ + PD++  ++     LVRI+ D       +Y  Y        K+++F +++
Sbjct: 232 AGQGVVIQPDFLADEHIAAGRLVRILPDYHLADIGIYAVYTSRSHLAPKVRSFIDYL 288


>gi|167579660|ref|ZP_02372534.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 298

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 125/285 (43%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A +GSF  A   L LS   + + +  LET  G++L  R  R  +LTE G   +
Sbjct: 1   MAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  + +            P G LRI   I  G + L   L  ++  YP++QI L 
Sbjct: 61  ERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  IR+  P+  S LI R L    +   A+P YL     P    +L 
Sbjct: 121 LSDRIVDVVDEGYDAVIRI-APLADSGLIARPLAPYRLVLCASPAYLAEHGAPAEPADLA 179

Query: 188 KHNLITFG-DLIPKCME-DFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
            H  + F     P  +E  F         +   R+ S L VN+  ++    + G GI L 
Sbjct: 180 AHECLGFSYSGQPAALEWPFESAQGQQHSV---RVRSRLAVNNGAALRMAALDGLGIILQ 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P  +V+D+     LVR++     P+  ++  Y    + T KL++F
Sbjct: 237 PAELVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSF 281


>gi|158422415|ref|YP_001523707.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158329304|dbj|BAF86789.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 345

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 129/296 (43%), Gaps = 8/296 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F     S SF+ AA +L +S + +S +I  LE  +G +LF R  R ++LTEQG  
Sbjct: 40  ENMRAFTQAVESDSFSEAARRLRVSPNVVSHRIQVLEKHLGCRLFNRTTRRMSLTEQGRV 99

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   +E    ++T +  + E    P G LR+   + LG+ LL      +   YP I ++
Sbjct: 100 YYETVTEALRLIDTAETSISELGALPRGALRVTAPLHLGRRLLAPMAARYQDAYPQIDVR 159

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L     D+  +  D A+RL    + SS I RK+  +     AAP YL     P    +
Sbjct: 160 LRLSEHMPDLIAESIDVALRL-ATFEDSSTILRKVAEVDRILCAAPAYLDRHGVPEKPAD 218

Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  +       +   +  W+ T   + +  P    L+ +    +  + V G GI + 
Sbjct: 219 LLNHQCLLMRHATSR---ELRWMLTDKGKDLAVPVAGHLEADDGDVLTVWAVEGRGIVVK 275

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P + V D      LV ++E       T+   YP       K+K F + +   AR +
Sbjct: 276 PRFEVADALAAGQLVPVLERHPPRPMTLAVLYPARQLVPLKVKTFADMLVEDARRY 331


>gi|16762126|ref|NP_457743.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16766662|ref|NP_462277.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143615|ref|NP_806957.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56415294|ref|YP_152369.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181875|ref|YP_218292.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|194443452|ref|YP_002042622.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194447818|ref|YP_002047395.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194471837|ref|ZP_03077821.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194737638|ref|YP_002116315.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195873554|ref|ZP_02697316.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197248197|ref|YP_002148291.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197264194|ref|ZP_03164268.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197301198|ref|ZP_02664450.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197364224|ref|YP_002143861.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198246154|ref|YP_002217336.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387349|ref|ZP_03213961.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204931143|ref|ZP_03221937.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205354268|ref|YP_002228069.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205357299|ref|ZP_02346679.2| HTH-type transcriptional activator AaeR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205358026|ref|ZP_02575044.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205358779|ref|ZP_02659008.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205359434|ref|ZP_02669976.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205360122|ref|ZP_02834737.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205360585|ref|ZP_02684585.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|207858615|ref|YP_002245266.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|25319790|pir||AD0911 probable LysR-family transcription regulator STY3547 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16421927|gb|AAL22236.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16504429|emb|CAD07882.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139250|gb|AAO70817.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56129551|gb|AAV79057.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62129508|gb|AAX67211.1| putative transcriptional regulator, LysR family [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|194402115|gb|ACF62337.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194406122|gb|ACF66341.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458201|gb|EDX47040.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713140|gb|ACF92361.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195633113|gb|EDX51527.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197095701|emb|CAR61270.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197211900|gb|ACH49297.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197242449|gb|EDY25069.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197287886|gb|EDY27274.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197940670|gb|ACH78003.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199604447|gb|EDZ02992.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204319910|gb|EDZ05116.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205274049|emb|CAR39055.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205322502|gb|EDZ10341.1| HTH-type transcriptional activator AaeR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205328101|gb|EDZ14865.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332045|gb|EDZ18809.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205336184|gb|EDZ22948.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340902|gb|EDZ27666.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348366|gb|EDZ34997.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710418|emb|CAR34776.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261248530|emb|CBG26368.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995572|gb|ACY90457.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159916|emb|CBW19435.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|320087814|emb|CBY97578.1| Uncharacterized HTH-type transcriptional regulator yhjC [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322716365|gb|EFZ07936.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323131728|gb|ADX19158.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|326625115|gb|EGE31460.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629391|gb|EGE35734.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332990225|gb|AEF09208.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 309

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 4/248 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ + +        E         R I + R      N  ++++++   G+GIA +P 
Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPL 241

Query: 247 YIVKDNPN 254
             V D  N
Sbjct: 242 MWVIDEIN 249


>gi|188580815|ref|YP_001924260.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179344313|gb|ACB79725.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 298

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ L  F  +AR G    AA +L +  +++SR+I+ LE  +  KLF R + G  LTE 
Sbjct: 2   FDWNDLTFFLELARHGRLMPAARRLKVDNTTVSRRIAELERGLDTKLFQRCSDGFLLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G KL  +   +  K+ +    L  S   +P+G++R+A+   +    L     EF    P 
Sbjct: 62  GHKLFVIAEIIEQKMLSVPEALGLSDGGEPAGRVRVASMEGIAAFYLSARFAEFAAAMPG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+ +   I+++   AD ++    P Q   L  R++    +  +A+  YL     P 
Sbjct: 122 IVVELVTERHLINLTKREADISVSFVPP-QGPRLKVRRVGAFRLALFASDRYLALRGRPE 180

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +L  H+ + +  DL+   +E  +WL  V RP         +  S  +       G+G
Sbjct: 181 TRADLQDHDFVDYVDDLV--AIEPVHWLLEVLRPSN----VVFRSTSMAAQQTAVAAGAG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +ALLP +  K NP LV ++ + I     +Y    E +++ G+++A   F+
Sbjct: 235 LALLPLFSAKTNPALVPVLPEEIVVRRELYLAVHEDIEHAGRVRAVTRFL 284


>gi|152999185|ref|YP_001364866.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151363803|gb|ABS06803.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 329

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 103/189 (54%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  GS 
Sbjct: 4   EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P + ++
Sbjct: 64  FYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I  ++ +D+     D A  +   + +  L+ R + T  +  YA+P YL     P + +E
Sbjct: 124 VISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAVHGTPKTPKE 183

Query: 186 LDKHNLITF 194
           ++ HN+  F
Sbjct: 184 IEAHNVSMF 192


>gi|114769233|ref|ZP_01446859.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114550150|gb|EAU53031.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
          Length = 310

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 132/290 (45%), Gaps = 6/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW+K R F V A  GS + AA  L ++Q ++ RQ+ GLE E+GI LF R  RGL LT
Sbjct: 20  VKFDWNKARAFLVTAEEGSLSAAARALGMAQPTLGRQVDGLEQELGIVLFERVGRGLQLT 79

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L      + +      +     S    G++ I+ +      LL   + +  +L P
Sbjct: 80  PGGLELLDHVRVMGNAAGRVSMNALGQSQTLEGRVCISASETYAAMLLPPIIAKLRILEP 139

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI +++++ N+  D+    AD AIR  +P +   LI +K+       YA P Y++    P
Sbjct: 140 DIHVEIVVSNQASDLRRREADIAIRNFRPTE-PDLIAKKVGEADAVLYATPDYIEKIGNP 198

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              Q+L   + +   D     ++  N L      + E     L   SYL + +    G  
Sbjct: 199 TMPQDLRHAHFVNL-DHAGMMIKALNKLGL---GLTEENFPLL-TESYLVMWELVRQGVA 253

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +L  +I   +P + R++ +     F ++      L  + +++   +++
Sbjct: 254 IGILDAHIGDADPIVRRVLPNFQPLIFPIWLVSHRELTTSRRIRRVYDYL 303


>gi|296104422|ref|YP_003614568.1| hypothetical protein ECL_04085 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058881|gb|ADF63619.1| hypothetical protein ECL_04085 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 295

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 147/291 (50%), Gaps = 19/291 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA +GSFT AAE + L+++ +S  I  LE E+G+ L  R  R LTLTE G+  ++ 
Sbjct: 9   MFVAVADAGSFTAAAESMGLTKAVVSFNIRQLEDELGVTLLLRSTRRLTLTEAGALFYQR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  + E  Q +++ +    +G+LRI TT + G  ++   L EF   +P+++++ +  
Sbjct: 69  SVRLLQEAERLQDDVRANHAGLTGELRITTTPEYGSQVVVPLLAEFSQQHPELRVRHVSS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELDK 188
           ++  D+  +  D AIRL   +  S      +    +   AAP +L N   P+ S++ L +
Sbjct: 129 SQHADLISERFDVAIRL-GTLADSRYHAALISNFTILPVAAPGWLAN--HPVESLEHLAQ 185

Query: 189 HNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              I   + +P  +       D N +A   +    PR   L  +S  ++M +   G G+A
Sbjct: 186 AGWIVH-ERLPSPLHWQVKDADGNLVAFEIKK--APR---LYADSAQALMAFAHAGCGVA 239

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP+++V++  N   LV ++         +Y  YP+A     K++ F +F+
Sbjct: 240 LLPEWLVRNALNSGGLVSLLPGYTFAQQGIYAVYPDAQHVPAKVRTFIDFM 290


>gi|330966209|gb|EGH66469.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 302

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 140/285 (49%), Gaps = 9/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +GSFT AAE+L L+ S++S+ +S LE+ +G++LF R  R L LTE+G   H
Sbjct: 10  IETFIAVANAGSFTAAAERLSLTNSAVSKSVSRLESRLGMRLFERTTRSLALTEEGVAYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V + +  +LE  +  L     +P+G+LRI      G+  +   + +F   +  ++ ++ 
Sbjct: 70  AVCTRMLAELEAAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILDFAGQHHKLRPRVT 129

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +DI  +  D A+R+  P I  + +  R L T  +   AAP YL+    P + ++L
Sbjct: 130 FTDRFVDIIEEGIDLAVRIGGPLIWPAGVAHRYLGTERVIFCAAPAYLQRHGTPTTFEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I FG           WL   ++   E R   + L + +  + +       GIA L
Sbjct: 190 GRHACILFGR---GDGSTSPWLFVDEQGQQEARAVEARLVIGNGEAQVAAVTSAWGIAQL 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +++KD      LV I+  + T    ++  +P   ++  K++A 
Sbjct: 247 ATWLIKDQLQRGELVEILPQLATEGLALHLAWPRNRESLPKVQAL 291


>gi|159045746|ref|YP_001534540.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157913506|gb|ABV94939.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 327

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 6/295 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R L  T+QG  
Sbjct: 22  DNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEEHLGVRLFQRTTRSLAPTDQGKT 81

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   +E  + ++   +  P G L +A  + +G+ L+   +  FL LYP+++++
Sbjct: 82  FFGAACEVLEAVENAEAQVINMTDNPKGSLYVAAPLGVGRRLIAPQVPGFLELYPEVRMR 141

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D A  L  P + S+L  RK+  +     A+P Y+     P +   
Sbjct: 142 LRMTDRKVDLTTEGLDLAFFLGHP-EDSNLRIRKIADVRRVLCASPDYIARRGHPQNGDA 200

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L            P   E F W    D+     R++   + +    +  + + G GIA+ 
Sbjct: 201 LVSEGHECLNLRFPGATE-FQWRLVTDQGPKRFRVAGRYESDDGDVLTDWALAGHGIAMK 259

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P + V D   +  LV + ED       +   +    +   K + F  +I  K  D
Sbjct: 260 PVFEVTDHLQDGRLVPVCEDTPPEPIQMACLFTHRKRQDPKTRLFMEYIIEKISD 314


>gi|15598320|ref|NP_251814.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|218890675|ref|YP_002439539.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254241818|ref|ZP_04935140.1| hypothetical protein PA2G_02535 [Pseudomonas aeruginosa 2192]
 gi|9949236|gb|AAG06512.1|AE004736_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126195196|gb|EAZ59259.1| hypothetical protein PA2G_02535 [Pseudomonas aeruginosa 2192]
 gi|218770898|emb|CAW26663.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 303

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 122/254 (48%), Gaps = 21/254 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  SG F+ AA +  ++ S++S+ I+ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   LE  +    E++  P G+LR+   +  G + L   + EFL  +P++ + +
Sbjct: 71  YERGVRILADLEEAERCASENAA-PRGRLRVNANVPFGHHFLLPLVPEFLAQHPEVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +DI     D A+R   P++SSSL+ RKL +  M    AP YL     P + Q L
Sbjct: 130 VLTDEVVDILEQRTDVAVRA-GPLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQAL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS----IMQYCVLG 238
             HN +             N++ T      R  GE  +  L  N+  S    + +  V G
Sbjct: 189 LGHNRL-----------GANYVRTRSGWPLRDAGEELVVPLSGNAQASDGEALRRLAVAG 237

Query: 239 SGIALLPDYIVKDN 252
            G+A L  + V+++
Sbjct: 238 LGLARLAAFQVRED 251


>gi|260599814|ref|YP_003212385.1| HTH-type transcriptional regulator YhjC [Cronobacter turicensis
           z3032]
 gi|260218991|emb|CBA34346.1| Uncharacterized HTH-type transcriptional regulator yhjC
           [Cronobacter turicensis z3032]
          Length = 299

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 11/273 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SFT AAE L L + S+SRQ+  LE+ +G +L +R  R + LT+ G   +
Sbjct: 7   MRLFVRVAELESFTRAAETLSLPKGSVSRQVQALESALGTRLLHRTTRRVHLTQDGQVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+             SG+LR+   + + Q+++   L EFL  YP I ++L 
Sbjct: 67  ERARDLLANLDELDGLFLHDPASISGRLRVDMPVAVAQSVVIPRLPEFLHHYPGIALELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+ + ++ S L+ R L  +     A+P YL     P ++ +L 
Sbjct: 127 SSDRLVDVVREGFDCVVRVGQ-LKDSGLVARPLGKLSQVNCASPDYLARFGCPETLDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALL 244
            H L+ +   +      F     + R  G    P    L VNS  +    C  G GI  +
Sbjct: 186 SHALVHYTPTLGTRPAGFE----IGRENGSEWIPTGGVLTVNSTETYQAACFAGLGIIQV 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           P   V++   +  LV ++         V   YP
Sbjct: 242 PRIGVREALRSGKLVEVLPQYRAAPMPVSLIYP 274


>gi|28868824|ref|NP_791443.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852063|gb|AAO55138.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 302

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 140/285 (49%), Gaps = 9/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +GSFT AAE+L L+ S++S+ +S LE+ +G++LF R  R L LTE+G   H
Sbjct: 10  IETFVAVASAGSFTAAAERLSLTNSAVSKSVSRLESRLGMRLFERTTRSLALTEEGVAYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V + +  +LE  +  L     +P+G+LRI      G+  +   + +F   +  ++ ++ 
Sbjct: 70  AVCTRMLAELEAAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILDFAGQHHKLRPRVT 129

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +DI  +  D A+R+  P I  + +  R L T  +   AAP YL+    P + ++L
Sbjct: 130 FTDRFVDILEEGIDLAVRIGGPLIWPAGVAHRYLGTERVIFCAAPAYLQRHGTPTTFEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I FG           WL   ++   E R   + L + +  + +       GIA L
Sbjct: 190 ARHACILFGR---GDGSTSPWLFVDEQGQQEARAIEARLVIGNGEAQVAAVTSAWGIAQL 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +++KD      LV I+  + T    ++  +P   ++  K++A 
Sbjct: 247 ATWLIKDQLQRGELVEILPQLATEGLALHLAWPRNRESLSKVQAL 291


>gi|115360530|ref|YP_777667.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285858|gb|ABI91333.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 345

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 142/286 (49%), Gaps = 9/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSFT AAE+L + + ++SR +  LE ++  +LF R  R   LT +G + +  
Sbjct: 35  AFVAVASEGSFTKAAERLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGRRFYEN 94

Query: 70  TSE-VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             + V   +E     L+     P G +RI++ +  G+ ++   L++F   YPDI I L+L
Sbjct: 95  CHQGVAQIVEAMNDMLELRQGPPRGLIRISSAVGFGRKIVAPLLEKFAQAYPDIIIDLLL 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++ ID+  +  D + R  + I+ SS+I R+L+ + M   AAP Y+     P  I++LD+
Sbjct: 155 DDRPIDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVARHGLPQRIEDLDR 213

Query: 189 HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I F     +  E +FN    + + +   R   L  N    +++  + G+GIA +  Y
Sbjct: 214 HECINFRFASGRVFEWEFNVDGRMQKYLPTSR---LTFNDADLVLRSVLNGAGIAQMAGY 270

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++D   +  LV  +   +      Y CY        +++ F +F+
Sbjct: 271 QIRDHLASKELVVALAKHVPEDRGHYICYLSRQHLPTRIRIFVDFM 316


>gi|319786571|ref|YP_004146046.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465083|gb|ADV26815.1| transcriptional regulator, LysR family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 304

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 130/275 (47%), Gaps = 16/275 (5%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  VA  G FT AA+ L L ++S+S  +  LE+ +G +LF+R  R + LT  G+    
Sbjct: 8   RIFVRVAELGGFTRAADSLGLPKASVSGAVRRLESALGTQLFHRTTRRVQLTGDGAVFLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              +   + E      ++   + SG++RI  +  + + L+   L  FL  +P +Q++L  
Sbjct: 68  RCRDFLGEAEELHTMFRQEPQQLSGRVRIGMSGGMARQLVLPRLGAFLDAHPGLQVELGA 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
             + +D+  +  DC +R  + +   SL+ R+L    +   A+P YL+    P ++++L  
Sbjct: 128 GERRVDVVREGYDCVVRTGE-VADPSLVARRLGMAPVATCASPAYLERHGVPRALEDLAS 186

Query: 189 HNLITFGDLIPKCMEDFNW------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           H L+ F     +  E F +       A+++ P        + V++  + +   + G G+ 
Sbjct: 187 HRLVQFAVAFGQKPEGFEYPLPDGGYASLEMP------GAVTVDNGEAYVGAALAGLGLI 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            LP + V++   +  LV ++  +      V   YP
Sbjct: 241 QLPRFAVREALADGRLVEVLPRLPAAPMPVSLLYP 275


>gi|312968156|ref|ZP_07782366.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Escherichia coli 2362-75]
 gi|312286981|gb|EFR14891.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Escherichia coli 2362-75]
 gi|323189333|gb|EFZ74616.1| hypothetical protein ECRN5871_2477 [Escherichia coli RN587/1]
          Length = 299

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL  +L EFL L+P I+++L 
Sbjct: 67  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPHLSEFLYLHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|317401669|gb|EFV82294.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 307

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 144/302 (47%), Gaps = 14/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA +L LSQ+++S+ I+ LET++   LF+R +R ++LTE G
Sbjct: 6   DLEGWAIFAKVADTGSFAKAAAELSLSQATVSKTITRLETKMKTMLFHRTSRSMSLTESG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  + E+ E S    GK+R+A  +  G   L   L  F+  +PD+ 
Sbjct: 66  YAALERAARILEEGEAVEAEVTEKSTSLRGKIRLAAPMSFGVTHLAPMLPPFMQAHPDVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  ++K  D+  +  D A+R+   +  S+L+ R+L ++ +    AP Y K    P   
Sbjct: 126 LEIEFNDKQSDLVSERFDLALRISN-LVDSTLLARRLCSVRILLVGAPSYFKRAGRPKHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           ++L +H  + +           +W    D+  GE   S    L VN+  ++      G G
Sbjct: 185 RDLAQHTALQYM----YARNGSSWRFRHDK-HGEFSQSLPVQLNVNNAEALSPALQAGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKAR 295
           +AL P+++  ++     L   M+D       ++   P   +   +++A   ++   L A 
Sbjct: 240 LALQPEFLAWEDLQSGALETAMDDWQVDPIALHIVTPPGRRRPARVQALIEYLAERLTAE 299

Query: 296 DW 297
            W
Sbjct: 300 PW 301


>gi|331657383|ref|ZP_08358345.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA206]
 gi|331055631|gb|EGI27640.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA206]
          Length = 299

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 128/287 (44%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  IRL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGIRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D + +      L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKGKKLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|172065391|ref|YP_001816103.1| MarR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997633|gb|ACB68550.1| transcriptional regulator, MarR family [Burkholderia ambifaria
           MC40-6]
          Length = 410

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 139/291 (47%), Gaps = 15/291 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  +A  GS + AA  L+LS S++S+ ++ LE  +G  L  R  R LTLT+ G  +
Sbjct: 77  QMTIFVRIAELGSLSAAARDLNLSPSAVSKSLAQLEDRLGTLLIKRTTRSLTLTDAGRAI 136

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +ETT +++      P G LR+  ++  G   L   L  +L  +PD+   +
Sbjct: 137 FARAGAILTDIETT-LDVAREGQLPEGILRLTCSLAFGCKQLTPVLGRYLGAHPDVAATI 195

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++  +++ +  D A+R+      S    RKL TIH    A+P Y++N  E  +  +L
Sbjct: 196 ALDDRLANLAEENYDIAVRITANTD-SGYAARKLATIHWVYCASPRYVENHAEICAPDDL 254

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  + +    P    +  W       I   ++   L  NS L++ +  + G G+A LP
Sbjct: 255 MNHTCLVY----PAMTVNGAWTFRQHDQIRHIQVDARLTSNSSLALREAAIDGLGVACLP 310

Query: 246 DYIVKDNPNLVRIMEDVITP------SFTVYFCYPEALKNTGKLKAFRNFI 290
            Y+V  + +++R    ++ P      S T+Y  Y  +      +++F +F+
Sbjct: 311 TYLV--SADIIRGDLKLVVPQYKAAISHTLYAMYYRSKYANALIRSFIDFV 359


>gi|330501828|ref|YP_004378697.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328916114|gb|AEB56945.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 295

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 20/253 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   GS   AAE + ++ S++S+QI  LE   G+ L +R  R LTLTE G+  
Sbjct: 6   RMALFATVVEKGSMVAAAEAMGMTASAVSQQIRRLEEATGVTLLHRTTRKLTLTEAGAAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +    +  +  L E    P G+LR+A  +     LL   L   L  +P + + L
Sbjct: 66  YESCRHIVELAQQAEQRLAEQRDAPVGELRVAAPVGFSGPLLCEALAPLLGAHPGLSLSL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ ID+     D AIR+ +  ++SSL+ R +    M   AAP YL     P+  Q+L
Sbjct: 126 FFQDEQIDLVESRIDLAIRVGRQ-ENSSLVARHVTDWRMLLCAAPAYLARAGVPVEPQQL 184

Query: 187 DKHNLITFG-DLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVLG 238
                   G D I   +E    L T+  P G       E RISC   N+ L+  Q+ + G
Sbjct: 185 -------LGLDWIGLHLERSQHL-TLHGPSGAQQRLRLETRISC---NNILAARQFTLAG 233

Query: 239 SGIALLPDYIVKD 251
            G++L P+  +++
Sbjct: 234 MGVSLQPEPEIRE 246


>gi|262281358|ref|ZP_06059139.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262257184|gb|EEY75921.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 293

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 139/309 (44%), Gaps = 32/309 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L  F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLHFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L      +  ++E   +++++      G++RI T    G   L   L EF + YP
Sbjct: 61  LEGMAL----VPLVEQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQYP 116

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL      
Sbjct: 117 LLTIDLIPVPKMIKLSHREADIVVSIDRPTSGPYIITR-LSDYCLKIYGSQNYLAQNPPI 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSYL 229
             +++L +H  + +                +D  +  P + CL+            +S L
Sbjct: 176 RGLEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSIL 219

Query: 230 SIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +       G+G+A+LP ++  D P L  ++E  +  + T +      L++  ++K   ++
Sbjct: 220 AQQIAVSAGAGLAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWDY 279

Query: 290 IFLKARDWK 298
           +  +A  ++
Sbjct: 280 LRKQADKYQ 288


>gi|73542229|ref|YP_296749.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72119642|gb|AAZ61905.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 302

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 17/296 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD   + VF   A  G+ + AA  L LS S+ S +++ LE  +G +L +R  R L+LT
Sbjct: 1   MYFDLLDVAVFTRAASLGNLSAAARDLQLSTSTASARLARLEQTLGTRLLHRTTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +      ++    E  +  + + +  P G LR+      G+  +   +  FL  YP
Sbjct: 61  ADGERFIEHAQQLLATAEAAEQSVGKGARAPHGLLRVTAPASFGRQHVSPAIPAFLETYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ L L ++ + +     D A+R+   +  SSL+ R L        AAP YL     P
Sbjct: 121 EIRLDLRLSDQVVPLVDAGIDVALRM-GALPDSSLVARALAPSRRVICAAPSYLAAHGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
               +L  HN +  GD          W    D P+GE  ++    L+V++   I    V 
Sbjct: 180 KHPDDLRTHNCLILGD-------QSAW--RFDTPLGETAVTVHGNLRVDNGEVIRDALVA 230

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G GIAL   + V     +  LV ++++  + P+ +++  YP       K +AF +F
Sbjct: 231 GMGIALKSTWDVGALLRSGQLVTVLDEYPVLPAVSIWAVYPSRHLVPAKTRAFVDF 286


>gi|26250154|ref|NP_756194.1| putative transcriptional regulator YhjC [Escherichia coli CFT073]
 gi|227883681|ref|ZP_04001486.1| transcriptional regulator YhjC [Escherichia coli 83972]
 gi|300971328|ref|ZP_07171409.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|301046588|ref|ZP_07193729.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|26110583|gb|AAN82768.1|AE016768_186 Hypothetical transcriptional regulator yhjC [Escherichia coli
           CFT073]
 gi|227839261|gb|EEJ49727.1| transcriptional regulator YhjC [Escherichia coli 83972]
 gi|300301452|gb|EFJ57837.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300411313|gb|EFJ94851.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|307555624|gb|ADN48399.1| hypothetical transcriptional regulator YhjC [Escherichia coli ABU
           83972]
 gi|315295419|gb|EFU54749.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
          Length = 323

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLAMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|17546079|ref|NP_519481.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428375|emb|CAD15062.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 309

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 125/277 (45%), Gaps = 16/277 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + L   +  +    VK SG LR+      G+  +   + +FL  +PD+ I L
Sbjct: 66  LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL+    P  +++L
Sbjct: 126 DLGDRIVDLVNEGFDCAIRL-GDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             HN + FG           W+      TV   +G      ++      + ++C+ G G+
Sbjct: 185 AGHNCLAFG---ASANVQRGWVFQQGGKTVTVKVG----GTMECTDGAVLREWCLQGHGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           A    + V  +     LV +++    P   ++  +P+
Sbjct: 238 AWRSWWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQ 274


>gi|261213090|ref|ZP_05927374.1| transcriptional regulator [Vibrio sp. RC341]
 gi|260838155|gb|EEX64832.1| transcriptional regulator [Vibrio sp. RC341]
          Length = 301

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+ G   +
Sbjct: 11  IRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTDAGELFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   PD++I L
Sbjct: 71  RQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENPDVRIHL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y     +P   ++L
Sbjct: 131 DFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLRGQPQHPKQL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +T G +     +      T+D P+       LQ  +   +++  +  +GI  +P 
Sbjct: 190 TDHRCLT-GSVKRWSYQHKETKQTLDVPVD----GDLQCKNGRVLVRTALAHNGIIRVPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +          LV + +D   PS      Y +      +LK F  F
Sbjct: 245 FYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|116051120|ref|YP_790049.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586341|gb|ABJ12356.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 303

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 122/254 (48%), Gaps = 21/254 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  SG F+ AA +  ++ S++S+ I+ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCTF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   LE  +    E++  P G+LR+   +  G + L   + EFL  +P++ + +
Sbjct: 71  YERGVRILADLEEAERCASENAA-PRGRLRVNANVPFGHHFLLPLVPEFLAQHPEVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +DI     D A+R   P++SSSL+ RKL +  M    AP YL     P + Q L
Sbjct: 130 VLTDEVVDILEQRTDVAVRA-GPLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQAL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS----IMQYCVLG 238
             HN +             N++ T      R  GE  +  L  N+  S    + +  V G
Sbjct: 189 LGHNRL-----------GANYVRTRSGWPLRDAGEELVVPLSGNAQASDGEALRRLAVAG 237

Query: 239 SGIALLPDYIVKDN 252
            G+A L  + V+++
Sbjct: 238 LGLARLAAFQVRED 251


>gi|288933563|ref|YP_003437622.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288888292|gb|ADC56610.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 303

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 24/294 (8%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V   GSFT AA +L LS   + + I+ LE+++  +L  R+ R  +LT+ 
Sbjct: 2   DKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         V  ++   +  ++   + P+G LR++     G +++      FL  +P +
Sbjct: 62  GRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPAV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D+  +  D AIR+ + I    L+ R L    M   AAP YL     P +
Sbjct: 122 RVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPGT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYC 235
            ++L  H           C+    W A        ++  +   R + L+ N   ++ Q  
Sbjct: 181 PEDLADH----------LCLSHTVWTARNEWRLPGIEGEVRWKRDAILRCNDGYALRQAA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + G+G+ + P+ ++ D   N +LVR++E        V+  + +  +   KL  F
Sbjct: 231 IAGAGLLMQPEVLLADALANGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQF 284


>gi|332284144|ref|YP_004416055.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428097|gb|AEC19431.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 313

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 134/295 (45%), Gaps = 16/295 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LHLS++++++ +  LE  + +KL  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAETLHLSKTTVTQLVQQLEARLRVKLLNRTTRKVNVTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  +   P G+LR+         +L   L  F   YPDIQ+
Sbjct: 64  AYYERVLRLLADMDDAETSLSGALASPRGRLRVDVPSPFASMILVPALPAFHARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-EPLSI 183
            L + ++ +D+  +  DC +R  + I + SL+ R    + +  YAAP YL   R +  S 
Sbjct: 124 HLGVSDRVVDLIDENVDCVVRGGE-ITNLSLVARHAADLPLAVYAAPSYLAAGRPDHPSE 182

Query: 184 QELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            EL  H ++         + P  M        V    G P +     N+YL+     + G
Sbjct: 183 LELSHHRIVGLSWSGTRRIFPSTMCRDGESIHVQ---GRPALVVDDGNAYLAA---GLAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G   LP Y+ + +     L+ +  D       +Y  +P+    + KL+ F +++
Sbjct: 237 IGALWLPTYMAQAHVARGELIPLFTDWQLDPMPLYIAFPQNRHVSAKLRVFIDWL 291


>gi|257454513|ref|ZP_05619771.1| LysR-family transcriptional regulator [Enhydrobacter aerosaccus
           SK60]
 gi|257448075|gb|EEV23060.1| LysR-family transcriptional regulator [Enhydrobacter aerosaccus
           SK60]
          Length = 282

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 21/269 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  +   GSFT AA+ L +S +  S+ +  LE  V  KL +R+ R L+LTE G + +
Sbjct: 7   LQVFRTIVEKGSFTKAADALDMSLAMTSKHLQHLEAYVQAKLLHRNNRNLSLTEVGQQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L+  + +  + SV P GKLRI   +          L +F   YP I++ + 
Sbjct: 67  AEAVHALDILQQAKTKAHDGSVLPEGKLRIIAPVWFATPYFVNLLAKFQQDYPKIELTVD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+  D+  +  D A+R+    Q  +LI + L  I  +  A+P +L     P S + L 
Sbjct: 127 LENRFTDLIAEGYDLALRVVNTPQ-DNLIVKPLGKIDFYYVASPRFLAQHEPPTSAEALS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
                     +P  + ++  +AT  +P           N+ + + Q  + G G A+LP++
Sbjct: 186 N---------LPGILPNYTHMATTLKPYNSS-------NNTVMMAQMALTGMGAAILPEW 229

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCY 273
           +++D      LV++ E   + S ++Y  Y
Sbjct: 230 LIEDEIAQGRLVKLFEQPFS-SVSIYAIY 257


>gi|218691805|ref|YP_002400017.1| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|218429369|emb|CAR10186.1| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|312948080|gb|ADR28907.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|320193967|gb|EFW68600.1| LysR family transcriptional regulator YhjC [Escherichia coli
           WV_060327]
 gi|324007326|gb|EGB76545.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
          Length = 323

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|331671856|ref|ZP_08372652.1| LysR-family transcriptional regulator [Escherichia coli TA280]
 gi|331070845|gb|EGI42204.1| LysR-family transcriptional regulator [Escherichia coli TA280]
          Length = 311

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 130/274 (47%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 19  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      + L+   LK FL  Y +I 
Sbjct: 79  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARTLVWPKLKPFLREYLEIN 138

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 139 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 199 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 256

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+ +V++   +  L++++++   P+F  Y+ Y
Sbjct: 257 CVPEDMVQEYIKSGKLIQVLQE-WCPTFPGYYLY 289


>gi|298485382|ref|ZP_07003472.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160080|gb|EFI01111.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 298

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 15/257 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGS + AAE++  + S +SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  ++E+ +  L  S   P+G+LRI        + +  ++ EF   YP
Sbjct: 61  EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  ID+     D AIR+   +  S+L  R L +  ++  A+P YL+    P
Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRI-GALPDSTLHARSLGSCPLNIVASPAYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WL---ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + ++L +H L+ F  +     E  N W    A  DR   +P IS     S    ++Y V
Sbjct: 180 KTAEDLAQHVLVGFTHV-----ESLNQWPLRHAEGDRLSIKPAISA----SSGDTLRYLV 230

Query: 237 L-GSGIALLPDYIVKDN 252
           L G GIA L D++  D+
Sbjct: 231 LEGVGIACLSDFMTNDD 247


>gi|293412952|ref|ZP_06655620.1| LysR family transcriptional regulator YhjC [Escherichia coli B354]
 gi|291468599|gb|EFF11092.1| LysR family transcriptional regulator YhjC [Escherichia coli B354]
          Length = 323

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++GI+L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGIQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR     +   +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIRTGASPE-DGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLIYPQRRELSRRVNLFMQWL 314


>gi|116249573|ref|YP_765411.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254221|emb|CAK03836.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 308

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 134/286 (46%), Gaps = 25/286 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   + VF  VA + SF  AAE+L LS S++S+ I  +E  +G+ L  R  R ++LT
Sbjct: 1   MAIDLKLVSVFLAVAEAKSFRGAAERLGLSHSAVSQAIRRMEDRMGVALIQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119
           E G +L+        ++E    + Q+   +P+G LR+A +  + +  + G  L  F   Y
Sbjct: 61  EAGMRLYERVGPAVAEVELALDDAQDRGSQPTGLLRLAVS-SIAERFISGPLLASFTHAY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHY 173
           P +Q+ + + +++ DI  +  D  +RL + I+   +       QR+LV       AAP Y
Sbjct: 120 PGVQVDVNVTDEEFDIVAEGYDAGVRLGEVIEQDMIAVPVSGNQRQLVV------AAPSY 173

Query: 174 LKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
           L+    P +  EL +H  I +    D+ P   E        D  +  PRI+    N    
Sbjct: 174 LERFGRPANPSELSRHCCIGWRPAPDVAPYRWEFEENGREFDVAV-NPRITT---NDMGV 229

Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           +++    G G+    +   +   D   LV +MED + P F  +F Y
Sbjct: 230 MVRTACAGGGVTFGMEETFRPYLDRGELVSLMEDYL-PPFPGFFLY 274


>gi|300950381|ref|ZP_07164307.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300450282|gb|EFK13902.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
          Length = 309

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 127/274 (46%), Gaps = 11/274 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ + +        E         R I + R      N  ++++++   G+GIA +P 
Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVPL 241

Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPE 275
            +V +  N  R   +++ P +      VY  Y E
Sbjct: 242 MLVINEIN--RGELEILLPRYQSDPRPVYALYTE 273


>gi|300693175|ref|YP_003749148.1| transcriptional regulators, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299075212|emb|CBJ34499.1| putative transcriptional regulators, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 301

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 10/249 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   +F  AA  L +S S++S  +  LE  +G++L  R  R + LTE G +L
Sbjct: 8   ELTAFIAIAEQRTFRAAAGVLGVSPSALSHAMRNLEARLGVRLLNRTTRSVALTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R        LE    E+     +PSG +RI+ + +  + L++  L +FL  YPDI ++ 
Sbjct: 68  LRRVRPAVADLEDAVNEVASERNRPSGSIRISASENAARPLVRHVLPDFLAAYPDIHVEC 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D + +DI  D  D  IRL + +    +  R    +   A A+P YL     P    +L
Sbjct: 128 VVDTRLVDIVADGFDAGIRLLEDVPRDMIAVRFGPDMRFVAVASPAYLSRHAPPERPHDL 187

Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  I F    G L    +E     A+V+  +  P    L + +   +++  + G GIA
Sbjct: 188 TQHRCIRFRFESGALYRWDLERRGTAASVN--VDGP----LTLGNLNLMVEAALAGIGIA 241

Query: 243 LLPDYIVKD 251
            +P+ +V +
Sbjct: 242 WVPENLVAE 250


>gi|206563608|ref|YP_002234371.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039648|emb|CAR55617.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 300

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 134/306 (43%), Gaps = 19/306 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D +R+F  V   GSFT A+ +L +  S +SR++  LE ++G++L YR  R +++TE 
Sbjct: 1   MDLDSIRIFLRVVERGSFTAASVELDMPLSRVSRKVKHLEDDLGVQLLYRTTRRVSVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     +++     P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYDRCLRAEDILLDADRQVRTLRTDPEGTLRVLVPYAIGLFQLEPALAEFRRRYPLV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  S  + R L   H    A+P YL     P +
Sbjct: 121 QLVLIYDNSPLDLVEHGFDVALRA-GLLNDSGYVARSLGWSHAKLAASPAYLDRTGRPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLG 238
             +L +H+++  G   P        L+  D   GE    P    L  N  +++++    G
Sbjct: 180 PDDLAQHDILFVGRDAPGLTLR---LSNTD---GERADVPVQPVLISNESVTVLRQATSG 233

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFIFL 292
            GIAL+  +       L R   +++ P +       ++  YP       K++AF  F+  
Sbjct: 234 GGIALISTHFTAR--RLARNELEIVLPDWHRTNDVELHALYPRRATLDSKVRAFVEFLTE 291

Query: 293 KARDWK 298
               W+
Sbjct: 292 LFATWR 297


>gi|300698309|ref|YP_003748970.1| HTH-type transcriptional activator aaeR [Ralstonia solanacearum
           CFBP2957]
 gi|299075033|emb|CBJ54603.1| Putative HTH-type transcriptional activator aaeR [Ralstonia
           solanacearum CFBP2957]
          Length = 298

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 139/307 (45%), Gaps = 40/307 (13%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   G+F  AA +L L+ SSIS+ +  LE E+G+ L +R  R L+LTE G   
Sbjct: 6   RMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLTEAGRVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   + V H     Q ++ E   +P+G+LRI    +L    L   L++F+  +P + ++ 
Sbjct: 66  YEECANVVHAAARGQQKVAELRDEPAGELRITAPSELAHQHLVPALRDFIAAHPRLAVRF 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ID+     D A+R+ + ++ SSL+ R++        AAP Y+     P +    
Sbjct: 126 ELGDEKIDLVEHRVDLAVRIGE-LRDSSLVARQIAWFDELICAAPDYVGRTGLPTT---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----------LQVNSYLSIMQYCV 236
                       P+ + D +WL  +  P+GEP              L+V+  L+  Q   
Sbjct: 181 ------------PQALADLDWL--IFTPLGEPAFVHLRNAQGHEVRLRVHGRLATNQAQT 226

Query: 237 L------GSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           L      G G+A LL   I  +     LV ++ D     F VY   P   ++   LK  R
Sbjct: 227 LKALALDGHGVARLLKADIGTELAQGRLVPLLPDWRLAGFGVYAITPR--RDAQPLKVTR 284

Query: 288 NFIFLKA 294
               L+A
Sbjct: 285 CIEHLRA 291


>gi|187920194|ref|YP_001889225.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718632|gb|ACD19855.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 306

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 136/289 (47%), Gaps = 17/289 (5%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           VA +G F+ AA++L ++ SS++R +  LE  +G  L  R  R ++LT+ G        +V
Sbjct: 13  VADAGGFSKAAQRLGVATSSVTRLMDSLEASLGTALLTRTPRKVSLTDAGIAYVEQVGKV 72

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              L      + +S   P G LRI+      +  L  +L  FL   P + + +++ +   
Sbjct: 73  LDDLAEADESVFDSGASPVGSLRISVPSTYSRLRLAPHLAAFLAANPRLFLDVVVADHFA 132

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL-- 191
           D+++D  D AIR+ +P + ++LI RKL     +  A+  YL+ C  P + Q LD H    
Sbjct: 133 DLALDRIDIAIRIGRPDRDANLIVRKLADNPRYVVASHAYLERCGTPQNPQALDSHECLR 192

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPDYI 248
           + +G           W  T  R   E R+     L  NS   + +  + G GIALLP+++
Sbjct: 193 VAYGG---GYRSRQVW--TFRRDGAEERVEVRGHLLSNSLDMLYEAVLAGQGIALLPEWL 247

Query: 249 VKDNPNLVRIM---ED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           V       R+M   E+ V +P      VY  Y    +++ K++A   F+
Sbjct: 248 VSAEIRSGRLMHLFENFVASPHPGDAIVYAAYLPNRRHSSKVRALVQFL 296


>gi|83721094|ref|YP_440946.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83654919|gb|ABC38982.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 304

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 125/286 (43%), Gaps = 10/286 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF   A +GSF  A   L LS   + + +  LET  G++L  R  R  +LTE G   
Sbjct: 6   SMAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  V  + +            P G LRI   I  G + L   L  ++  YP++QI L
Sbjct: 66  YERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D  IR+  P+  S LI R L    +   A+P YL     P    +L
Sbjct: 126 TLSDRIVDVVDEGYDAVIRI-APLADSGLIARPLAPYRLVLCASPAYLAEHGAPAEPADL 184

Query: 187 DKHNLITFG-DLIPKCME-DFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
             H  + F     P  +E  F         +   R+ S L VN+  ++    + G GI L
Sbjct: 185 AAHECLGFSYSGQPAALEWPFESAQGQQHSV---RVRSRLAVNNGAALRMAALDGLGIIL 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            P  +V+D+     LVR++     P+  ++  Y    + T KL++F
Sbjct: 242 QPAELVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSF 287


>gi|254236094|ref|ZP_04929417.1| hypothetical protein PACG_02053 [Pseudomonas aeruginosa C3719]
 gi|296388374|ref|ZP_06877849.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|126168025|gb|EAZ53536.1| hypothetical protein PACG_02053 [Pseudomonas aeruginosa C3719]
          Length = 303

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 122/254 (48%), Gaps = 21/254 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  SG F+ AA +  ++ S++S+ I+ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCTF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   LE  +    E++  P G+LR+   +  G + L   + EFL  +P++ + +
Sbjct: 71  YERGVRILADLEEAERCASENAA-PRGRLRVNANVPFGHHFLLPLVPEFLAQHPEVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +DI     D A+R   P++SSSL+ RKL +  M    AP YL     P + Q L
Sbjct: 130 VLTDEVVDILEQRTDVAVRA-GPLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQAL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS----IMQYCVLG 238
             HN +             N++ T      R  GE  +  L  N+  S    + +  V G
Sbjct: 189 LGHNRL-----------GANYVRTRSGWPLRDAGEELVVPLSGNAQASDGEALRRLAVAG 237

Query: 239 SGIALLPDYIVKDN 252
            G+A L  + V+++
Sbjct: 238 LGLARLAAFQVRED 251


>gi|73538167|ref|YP_298534.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72121504|gb|AAZ63690.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 313

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 135/287 (47%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF  AA+ L L +++++R I  LET +G+KL +R  R +++T  G+  +
Sbjct: 7   MQAFTRVVDMGSFARAADSLDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTSDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  L   +  P G L + TT  L +  L  +L +F   YP++++ L 
Sbjct: 67  ERCVRILADVEEAEQSLTRHNNSPKGTLSVDTTAGLARIALIPHLHDFFAAYPELKLDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++ K ID+  +  D  +R+       S++ R++  + +  +A+P YL     P  + +L 
Sbjct: 127 INGKPIDLLQEGVDVVLRVGA--VDESMVARRIGQLKLAFFASPIYLNRFGTPHELADLA 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  +    L  +   ++ W  T      E  + S +  N     ++  + G G+A L  
Sbjct: 185 QHKAVNH--LSNRTGREWPWQFTRGNESTEILLPSAISTNDGDVYLECTLAGHGLACLSR 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + +    +  LV +M D  +    +   YP+    + K++ F N++
Sbjct: 243 VMAEPYVASGRLVEVMSDWQSEELPISAMYPQNRHLSAKVRVFVNWV 289


>gi|170702069|ref|ZP_02892984.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133028|gb|EDT01441.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 310

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 3/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R + LT+ G +  
Sbjct: 13  IELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   + E       P+G LRI+     G   +   L  F   YPD+ ++  
Sbjct: 73  EQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAFRERYPDVCVETH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID + +  D AIR R P   SSL+ RKL    +   A P YLK    P ++ +L 
Sbjct: 133 LSNRNIDFAEEGFDLAIRGRAP-ADSSLVARKLEDAELVVVATPGYLKRAGVPRAVDDLH 191

Query: 188 KHNLITFGDLIPKCMEDFNWL 208
            H  I F   +P       WL
Sbjct: 192 AHECIQF--ELPSSGRPIPWL 210


>gi|50121159|ref|YP_050326.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611685|emb|CAG75134.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 298

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 120/270 (44%), Gaps = 6/270 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           + F  VAR  SFT AA QL +SQS++S  I  LE  +GI+L  R  R +++TE G +L  
Sbjct: 10  QAFIAVAREQSFTKAAAQLGVSQSALSYTIRTLEAHLGIRLLTRSTRSVSVTEAGERLLS 69

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                + ++E     L     KP+G +RI +     + LL   L   LL YPDI I++I 
Sbjct: 70  RIGPHFDQIEDEIAALSGMREKPAGTVRITSVEHAAETLLWPKLAPMLLKYPDINIEIIS 129

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +    DI  +  D  +RL + +    +              +P YLK    P+   +L  
Sbjct: 130 EYGLKDIVAERYDAGVRLGEQVDKDMISLPLAENFSFAVVGSPSYLKRKAVPVIPSDLSH 189

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPDY 247
           H+ I     +P     + W    +    + R+      + +S+M+   L S G+A LP  
Sbjct: 190 HSCIKL--RLPTLGSIYTWEFYKEGNEIKVRVDGQGTFATISMMRQAALDSLGLAYLPKD 247

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            V     N  LV+++ D   P    +  YP
Sbjct: 248 TVDAELKNGKLVQVLADWCPPRPAYHLYYP 277


>gi|254476489|ref|ZP_05089875.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214030732|gb|EEB71567.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 304

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 137/305 (44%), Gaps = 31/305 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LR+F   A   + T A   L L+ +  S +++ LE E+G +L +R  R ++++++
Sbjct: 1   MDTDSLRLFVAAAERLNITAAGRDLGLAPAMASNRLAKLERELGTELLHRTTRKISISQE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+       EV  ++E  +  +   +++PSG LR A      Q  +   L  F  +YPDI
Sbjct: 61  GAAFLPYAREVLAQVEAGRAAVGAGALRPSGVLRFAAPSSFAQLHIIPLLPNFQTIYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +   D+     D A+R   P++ SSL+ RKL        A+P YL++   P++
Sbjct: 121 TIDLRLSDTRQDVIEGSFDLALR-SAPLEDSSLMGRKLADDTRILCASPAYLEHSGRPMT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-----------GEPRISCL-----QVN 226
             +L+ H  +++    P+ +   +    V  P               R++ L      VN
Sbjct: 180 PDDLEAHRFLSWSSTTPRQIIHADGQTAVLDPTKMMCRTILDDGTSQRLATLAGMGISVN 239

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           S  S+ Q    G  + +LPD+ + D   L              +  YP++   T K++ F
Sbjct: 240 SLWSVAQDIEAGRLVRVLPDWRLHDQSVL--------------WLIYPKSNVLTPKVRCF 285

Query: 287 RNFIF 291
            +F+ 
Sbjct: 286 MDFLI 290


>gi|170728840|ref|YP_001762866.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169814187|gb|ACA88771.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 309

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 12/252 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ + L+++++SR+++ LE + G++L +R  R L LT+ 
Sbjct: 1   MDLNRVQMFAQVVEQGSFTAAAKVMGLTKATVSRKVAELEADAGVQLLFRTTRALKLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  +     +   L++ + +L  +     G L I   I+LGQ  L     +FL  YPDI
Sbjct: 61  GNAYYNRVHRILADLQSAEDQLSSNQQMVKGNLNIVCPIELGQLFLGRVFAQFLTHYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I   L N+++D+  +  D   ++   +   SL   +++       A+P YL     P  
Sbjct: 121 TIDAELTNRNVDVVAEGVDVLFQITS-MSDPSLQTYEMINTDKMLMASPSYLARNGTPKV 179

Query: 183 IQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            Q+L KH  I    T  D      +   W+        EP  + L VN+     +  + G
Sbjct: 180 PQDLSKHKAIKLKSTHIDGSWTLFDGKEWVTQ------EPE-AQLTVNNVTLAREAAIEG 232

Query: 239 SGIALLPDYIVK 250
            GI ++P  I +
Sbjct: 233 LGITIVPTLIAQ 244


>gi|300690632|ref|YP_003751627.1| HTH-type transcriptional activator aaeR [Ralstonia solanacearum
           PSI07]
 gi|299077692|emb|CBJ50328.1| putative HTH-type transcriptional activator aaeR [Ralstonia
           solanacearum PSI07]
          Length = 305

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 143/307 (46%), Gaps = 33/307 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+   +F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE 
Sbjct: 1   MEWNDWEIFCRVVEAGSFTAAAEVLGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P++
Sbjct: 61  GSHFYDDIAPLFERLREVHADTAAASETVSGTLRIAAPYEVGAQHLTEPVCQTLARFPNL 120

Query: 123 QIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+ +  +  D ++  Y    + + + +  SSL+ R++V I    YAAP  L   R PL
Sbjct: 121 QIQVHISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVLIPRGLYAAPSLLAE-RAPL 179

Query: 182 SI-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---------NSYLSI 231
           ++  +L     ++  D       D +W   V RP GEP     +V         N+ + +
Sbjct: 180 AMPADLAGWPCLSGPD-------DASW---VFRPAGEPTAEPFEVPIQPRLQTLNAEMRV 229

Query: 232 MQYCVLGSGIA----LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            +  V G G+A    L+ D  V     LVR++ D       VY     AL    KL   +
Sbjct: 230 -RAAVRGLGVARMARLVGDAEVATG-RLVRVLPDYEPTPLRVY-----ALMPARKLVPRK 282

Query: 288 NFIFLKA 294
             +FL A
Sbjct: 283 VRVFLDA 289


>gi|261344816|ref|ZP_05972460.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
 gi|282567263|gb|EFB72798.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
          Length = 297

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 141/310 (45%), Gaps = 27/310 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++  F  V  SGSFT AAE L LS+S +S  I  LE  + + L  R+ R + LT
Sbjct: 1   MQKNLKQITSFLQVVDSGSFTKAAEILGLSRSMVSIDIKQLEQRLNVSLLTRNTRNIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  ++E    + Q   +  +G LR ++T + GQ  +   L EF  LYP
Sbjct: 61  EVGKHFYDDFKRIQLQIEEAFEKSQNLGLNITGTLRFSSTNEFGQRYILPLLPEFCRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +Q   ++   D+  +  D AIRL   ++SSSL  RKL    +H  A P + +     
Sbjct: 121 KLHLQYTFNSSLDDLISEKLDIAIRLGN-LKSSSLKVRKLGEYAIHLVATPQFAR----- 174

Query: 181 LSIQELDKHNLITFGDL--IPKCMED-FNWLAT---VDRPIGE----PRI-SCLQVNSYL 229
                  ++ ++   DL  IP       NW  T   +    GE    P I S    NS  
Sbjct: 175 -------QYPIVQISDLAEIPWITHSLLNWQDTEYFLQNNSGEKFELPLINSQYSSNSAE 227

Query: 230 SIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            I Q  +   G+A+ PD++V+++     L+R++ +   P   +   YP       K +AF
Sbjct: 228 VIHQMALASLGVAICPDWLVEEDIKHNRLIRLLPEFSLPKRNIQLLYPNTSNLPAKTRAF 287

Query: 287 RNFIFLKARD 296
             F+  K ++
Sbjct: 288 IEFLVGKLKE 297


>gi|218680868|ref|ZP_03528765.1| transcriptional regulator, LysR family protein [Rhizobium etli CIAT
           894]
          Length = 222

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R LTLTE G+ 
Sbjct: 5   EGIAAFVAVVEAGSISEAARRLRLSKSVVSERLAELEKSLGGILLHRTTRKLTLTEDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + + H+++    ++ E     SG +RIA  +  G+  L   L  FL  +PDI++ 
Sbjct: 65  FLERATRIVHEIDEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLAEHPDIELT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D++ +D + D  D  IR   PI  S L+  KL        A+P YL     P S+ +
Sbjct: 125 LDIDDRRVDAASDGYDAVIR-NGPIADSRLVAWKLTRSRRLLCASPDYLAREGTPSSLTD 183

Query: 186 LDKHNLITF 194
           L+ H  I +
Sbjct: 184 LNGHRGIFY 192


>gi|167839524|ref|ZP_02466208.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 305

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 137/297 (46%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V ++GSFT AA  L + ++++SR++  LE ++G++L +R  R L LT
Sbjct: 1   MAADPNDTLIFVRVVQTGSFTAAARLLRMPKTTVSRRVMTLEAQLGVQLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  +L+     + +    P G LR+      G   +   L  F   YP
Sbjct: 61  EAGGLYYAHCRNMAAQLDEAHAAVSQLQSGPRGWLRVTLPHSFGATWIAPLLAGFRRAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++++++  +  +D+  D  D A+RL   +  S L+ R+L +     YA+P YLK    P
Sbjct: 121 DVRLEILASHVPLDLVADEIDIALRL-GVLPDSDLVARRLGSFATGVYASPSYLKRHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCV- 236
               EL  H  +T      +    + W   + +P G  R   L    V S  +++   + 
Sbjct: 180 EHPGELRAHRALTLHQA--RRAAGYAW--PLRKPGGRARYFALDPVIVASDPALIHDALC 235

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G++L   + +    +   L R++ D   P+      +P       K++AF +++
Sbjct: 236 AGEGLSLAMHHSMASDVEGGRLRRVLRDWSGPAQDFNALFPRGRVALPKVRAFVDYL 292


>gi|163759793|ref|ZP_02166877.1| transcription regulator, LysR family, putative [Hoeflea
           phototrophica DFL-43]
 gi|162282751|gb|EDQ33038.1| transcription regulator, LysR family, putative [Hoeflea
           phototrophica DFL-43]
          Length = 301

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 3/248 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +RVF  VA   SF  AA  L+++ +S++R ++ LE ++  +L  R  R + LT  G
Sbjct: 3   DIKPIRVFLKVAELKSFAAAARNLNMTPASVTRIVARLENDLDTQLLKRTTRQVALTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +++    + +  + +    E+  ++    G+L I   + LG  LL   +  F L YP++ 
Sbjct: 63  ARVAARFAPIVEQFDQIAGEVARAARPDHGRLAINAPMSLGLRLLPDLIDSFRLAYPNVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L +  +DI  +  D AIR+  P    S I RK+  +  HA AAP        P + 
Sbjct: 123 LNVQLTDTLVDIVEENCDLAIRISGPPTDKSTIWRKICEVPRHAIAAPGLFDRIDRPQTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +   +++       +  F   A + R I  P  + L  NS   +      G GIA+
Sbjct: 183 DDLKREFCMSYSANGGSEIWRFR-KAQITRNI--PAGTELVSNSGDFLYSLVKSGDGIAV 239

Query: 244 LPDYIVKD 251
           LPD+I KD
Sbjct: 240 LPDFIFKD 247


>gi|126640207|ref|YP_001083191.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
 gi|169797694|ref|YP_001715487.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|184156448|ref|YP_001844787.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213155512|ref|YP_002317557.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215485048|ref|YP_002327289.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|239503093|ref|ZP_04662403.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB900]
 gi|260557637|ref|ZP_05829851.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|301347770|ref|ZP_07228511.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301511241|ref|ZP_07236478.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301597251|ref|ZP_07242259.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332853584|ref|ZP_08434836.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332869299|ref|ZP_08438697.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332875580|ref|ZP_08443392.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|126386091|gb|ABO10589.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii ATCC 17978]
 gi|169150621|emb|CAM88530.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|183208042|gb|ACC55440.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213054672|gb|ACJ39574.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213987700|gb|ACJ57999.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|260408810|gb|EEX02114.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|322506314|gb|ADX01768.1| transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|332728548|gb|EGJ59921.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332732807|gb|EGJ64022.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332736153|gb|EGJ67168.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 293

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 34/310 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L+ F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLQFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60

Query: 61  EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            +G  L  RV      ++E   +++++      G++RI T    G   L   L EF + Y
Sbjct: 61  LEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 115

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL     
Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKIYGSQNYLAQNPP 174

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228
              +++L +H  + +                +D  +  P + CL+            +S 
Sbjct: 175 IRRLEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 218

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           L+       G+G+A+LP ++  D P L  ++E  +  + T +      L++  ++K   +
Sbjct: 219 LAQQIAVSAGAGLAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 278

Query: 289 FIFLKARDWK 298
           ++  +A  ++
Sbjct: 279 YLRKQADKYQ 288


>gi|126726258|ref|ZP_01742100.1| transcriptional regulator [Rhodobacterales bacterium HTCC2150]
 gi|126705462|gb|EBA04553.1| transcriptional regulator [Rhodobacterales bacterium HTCC2150]
          Length = 300

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 138/288 (47%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   GSF+  +     + S++S+QIS LE  VG +L +R   G+T+++ G++ 
Sbjct: 8   QMLLFVKVVDLGSFSAVSRSSGQTPSAVSKQISQLEDHVGRRLLHRTRTGVTVSDDGAEF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  K +     +     +P+G LRIA+++  G+  L   L  FL  YP I + L
Sbjct: 68  YIKCCALAEKYQDAADHIANFDPEPNGLLRIASSVAFGKFQLIVALPNFLAQYPKITVSL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +DI  +  D AI   + + + ++I RK++       A+P ++     P S Q+L
Sbjct: 128 ELTDRHVDIEEEQFDVAINFAEQLTNPNMIARKIMRNERVLCASPDFIAAHGVPTSFQDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLP 245
           ++ N +   +++ +      W A ++        S   V NS  ++ +  + G GIA L 
Sbjct: 188 ERFNCLRTSNMVGRNA----WTAELNGKTHTVDASGNFVGNSADAVYKAALAGLGIARLS 243

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            YIV D      LVR+  + +     V   + E    + K++ F  F+
Sbjct: 244 TYIVADKFETGELVRLFPEYVQKGADVAVIFAEKRNLSPKIRLFVEFM 291


>gi|83647551|ref|YP_435986.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83635594|gb|ABC31561.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 304

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F      GSF  AA+ L LS+  ++R +SGLE  +G KL +R  R L+LTE G +  
Sbjct: 7   MRAFVATVDHGSFAKAADILDLSRPVLTRLVSGLEDSLGAKLLHRTTRRLSLTESGERFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V+  L+  + +L + +  P G LR++  +      L+  + EF+  YP I++ + 
Sbjct: 67  EACRNVFSLLDEAESDLSQQTQCPKGVLRLSAPMAFSLLHLEPVIAEFMSTYPSIEVDME 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D +IR+   ++   LI R++    +   A+P YLK    P S  +L 
Sbjct: 127 LADRRVDLVEEAFDLSIRIAHELE-PGLIARRIGGTALVTCASPEYLKLNGLPESPDDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            H  + F           +W    +  +    +    + N+ + + +    G GI  LP 
Sbjct: 186 THECMGFS-----LARRNSWSFLENDKVRYVDVRGRFKSNNGIFLAKLAESGKGIVQLPC 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +IV +      LV +++D   P+  +Y  Y        K++ F +F+
Sbjct: 241 FIVNEALREKRLVTVLKDYQPPNLDIYCVYQSREYLPQKVRLFIDFM 287


>gi|54309487|ref|YP_130507.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913923|emb|CAG20705.1| hypothetical transcriptional regulator protein, LysR family
           [Photobacterium profundum SS9]
          Length = 311

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 142/303 (46%), Gaps = 33/303 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F+ +  +GS   A+E   L +S+ISR+I  LE E+ I LF+R  R L LTE GSK
Sbjct: 4   EDLKLFHQIVDTGSLNRASEIFDLPKSNISRRIKSLEEELNILLFHRQNRALQLTEAGSK 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRI-----ATTIDLGQNLLQGNLKEFLLLYP 120
            +  T  +   LE +  E+   + + SG LRI        +D+G+ +       F+ +YP
Sbjct: 64  FYTKTKAMLIDLEASIQEITAPTYEVSGHLRIQLLPFPEILDIGKMIFT-----FMDMYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK--PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            I +++I   +D ++  ++ D A+R+ +   ++ SSL+ R         +  P Y+K   
Sbjct: 119 KISVEIITSAEDKNMVENHIDIALRVGEGNTLEDSSLVARPFKHASFGFFCTPEYVKQHG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQY 234
            P +  +L + N+I F    P      N     + P G+         L +NS    M+ 
Sbjct: 179 RPQTADDLRQLNVIRFR--FP------NGQIYGNLPFGKDETVEVSGNLVMNSVPLCMEA 230

Query: 235 CVLGSGIALLPD-----YIVKDNPNLVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRN 288
           C+   GI  +P+     Y+ +D   L+R+  D I PS    +  YP     T   + F  
Sbjct: 231 CLQNRGIVFIPEDIGNYYLERD--MLIRLF-DHIEPSIKYGWLVYPSRKNLTLAARTFVE 287

Query: 289 FIF 291
           FI 
Sbjct: 288 FIL 290


>gi|293611202|ref|ZP_06693500.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826453|gb|EFF84820.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 293

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 34/310 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L  F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLHFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60

Query: 61  EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            +G  L  RV      ++E   +++++      G++RI T    G   L   L EF + Y
Sbjct: 61  LEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 115

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL     
Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVVSIDRPTSGPYIITR-LSDYCLKIYGSKNYLAQNPP 174

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228
             ++++L +H  + +                +D  +  P + CL+            +S 
Sbjct: 175 IRALEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 218

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           L+       G+G+A+LP ++  D P L  ++E  +  + T +      L++  ++K   +
Sbjct: 219 LAQQIAVSAGAGLAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 278

Query: 289 FIFLKARDWK 298
           ++  +A  ++
Sbjct: 279 YLRKQADKYQ 288


>gi|254000061|ref|YP_003052124.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253986740|gb|ACT51597.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 307

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 97/179 (54%), Gaps = 7/179 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A  GSF+ AA +L ++   +S+ +  LE ++G++LF R  R LTLTE G +     
Sbjct: 10  FVRSAELGSFSAAARRLSMTAGGVSKNVGKLEADMGVRLFQRSTRKLTLTEAGEQF---L 66

Query: 71  SEVYHKLETTQIELQESS---VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +V   L+T Q  +  +S    KP+G L++   +  G++ +   L EFL LYPDI+    
Sbjct: 67  QQVAGGLDTIQAAIANTSNAGGKPAGTLKVGMAMAFGRDQILPLLGEFLRLYPDIKPDWR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            DN+ +D+  +  D AI     I S  ++ R+L  +H+   A+P YLKN   P + ++L
Sbjct: 127 FDNRQVDLIAEGFDVAIGGGIQI-SPGIVMRQLAKVHLILVASPGYLKNKILPKTPEDL 184


>gi|222086891|ref|YP_002545425.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724339|gb|ACM27495.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 303

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 136/294 (46%), Gaps = 17/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +RVF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FDAMRVFSRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E  +     +  KP G LR+     L ++ +  NL  FL  YP+I++
Sbjct: 64  AYYQRCLRILSDIEDAEGAF--AGAKPKGLLRVDVHGTLARHFVLPNLPSFLETYPEIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R+  P Q S +I R++  +     AAP Y++    P   +
Sbjct: 122 YMSEGDRFVDLIREGIDCVLRVGTP-QDSDMIARRVAMLEEITLAAPAYIERFGMPTHPE 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            LD H ++ F     G L+P        +  +  P      + + VN+  S      LG 
Sbjct: 181 ALDGHRMVGFRSSATGGLLPLEFTVDGAIRNITLP------ATVSVNAAESYFSAAKLGL 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  +P Y  ++   +  LV +++D       V   YP   + + +++ F +++
Sbjct: 235 GLIQVPRYHAEEALKSGELVHVLKDFPPTRTPVSMLYPRNRQLSPRVRVFIDWL 288


>gi|115351667|ref|YP_773506.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115281655|gb|ABI87172.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 310

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 3/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R + LT+ G +  
Sbjct: 13  IELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   + E       P+G LRI+     G   +   L  F   YPD+ ++  
Sbjct: 73  EQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAFRERYPDVCVETH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID + +  D AIR R P   SSL+ RKL    +   A P YLK    P ++ +L 
Sbjct: 133 LSNRNIDFAEEGFDLAIRGRAP-ADSSLVARKLEDAELVVVATPGYLKRAGVPRAVDDLH 191

Query: 188 KHNLITFGDLIPKCMEDFNWL 208
            H  I F   +P       WL
Sbjct: 192 AHECIQFE--LPSSGRPIPWL 210


>gi|262368411|ref|ZP_06061740.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262316089|gb|EEY97127.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 310

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F    + GS+THAA+ L LS+S+I + I  LE ++ ++L  R  R L+LT++G  L 
Sbjct: 9   ISAFVASVKYGSYTHAAKHLGLSRSAIGKSIVRLEEQMEVRLLNRTTRSLSLTDEGRILF 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   LE     +    ++P G L++     LG   +   L  FL  +P ++  + 
Sbjct: 69  DYCQQILEGLEEVDHVMASRRLEPIGTLKVTAPHSLGHRYILPILDTFLKKWPGLKADIS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  +  D  IR+ +P   S L+ R +    M   A+P Y+K    P + ++L 
Sbjct: 129 FTDRFVDIIEEGFDIGIRVGEPKDDSRLLTRTIAWQKMQTCASPQYIKLYGSPQTPEDLA 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           K + I     +       NW    D  I    G  +   ++++S  +I+   V G GI  
Sbjct: 189 KFDTI----FLNGSNNRRNWKFKTDSGIYVFEGPEK---MKIDSSDAILASAVSGFGIIQ 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP YI +   D   L+ ++E        +   YP     + +++ F +++
Sbjct: 242 LPTYITEESIDQLQLIPLLEKYTVEPEPIRIIYPSKKHLSPRIRMFIDYL 291


>gi|291613636|ref|YP_003523793.1| LysR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291583748|gb|ADE11406.1| transcriptional regulator, LysR family [Sideroxydans lithotrophicus
           ES-1]
          Length = 299

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 135/296 (45%), Gaps = 14/296 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SF  AAE+LH++ +++S+QI  LE  +G+ LF R  + L L E    
Sbjct: 9   NALRFFEAAARHRSFIRAAEELHVTPAAVSQQIKLLEDHLGVALFNR-GKTLVLNESAHD 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              + S+ + +LE   + ++  S+  +G L I+T        L   L +F L YPD+++ 
Sbjct: 68  ALHLVSDAFDQLERAMLRVRSGSI--AGPLTISTPPVFAARWLIPRLNDFYLRYPDVEVH 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+   + +D SM+  D AIR          ++R L+   + A A P    + + P  +  
Sbjct: 126 LLATRRIVDFSMEEVDMAIRFSSDPHPGLSVER-LMPEWIVAVATPELAASIKTPADLLH 184

Query: 186 LD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            D  + +        P+       L  VD P+   R      ++ L+I Q  V G G+ L
Sbjct: 185 ADLIEDDWHIMRGTFPEWKTWLAGLGVVDAPLNVRRFG----DADLAI-QAAVNGLGVTL 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               +V+++     LV+I+   I    +     P       K+ AFR ++F +A D
Sbjct: 240 AWHSLVQNDLGSGRLVQILGHNIASDLSYQLVMPRNKSMLNKVAAFRAWLFEQAAD 295


>gi|226943200|ref|YP_002798273.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226718127|gb|ACO77298.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 296

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 140/294 (47%), Gaps = 8/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +AR+   T AA +L +  ++++R++  LE  +G  LF R + G   TE 
Sbjct: 1   MDWDNLRFFLELARAKKLTVAARRLGVDHTTVARRVQALEKSLGQPLFIRGSSGYGPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +       + +  +++ + SG +RI  T   G  LL G L      YP +
Sbjct: 61  GRRLLVQVEAMESAYRAIEQDDPDTADQLSGLVRIGATEGYGIELLAGQLAALTRRYPHL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+   + + +S   AD  I L +P +   +I R L    +  YA+  YL       S
Sbjct: 121 GVDLLAVPRMVRLSRHEADIVITLERPERGPYIITR-LTDYVLRLYASADYLAAQPPIRS 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L +H  +++  DL+    ++ ++L      IG PR   L+  S L+  +    G+GI
Sbjct: 180 RDDLRQHGFVSYIEDLL--YSKELHYLDD----IGRPRQVALRSTSILAQQKAAAAGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+LP +  + +P LV ++ D +  + T +   P   K+  +++   +F+   AR
Sbjct: 234 AILPSFAARKDPALVEVLADQVEFTRTFWMLMPVESKDLARMRVTWDFLREMAR 287


>gi|197337234|ref|YP_002158790.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314486|gb|ACH63935.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 320

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 1/181 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V + GSFT AA    +  S++S+QI  LE E+G++L  R  R  +LT  G +
Sbjct: 5   NQLSLFIDVVQQGSFTKAAALHDMDNSALSKQIKKLEAELGVQLLNRSTRTFSLTPAGEE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   L+  +         P G++RI   + +GQ  LQ  + +F+  YPD+++ 
Sbjct: 65  ILEQAHQLVGSLDNVKSIADSYQAVPKGRIRITAPLHIGQGYLQPVISQFMTTYPDVEVV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L++D+K  DI  ++ D A RL + +  SSLI +K+  I     A+  ++K   EP + +E
Sbjct: 125 LMMDDKRSDIISEHFDVAFRLGR-LDDSSLIAKKVADIRGVILASHSFIKRFGEPSTPEE 183

Query: 186 L 186
           L
Sbjct: 184 L 184


>gi|190895386|ref|YP_001985678.1| transcriptional regulator LysR family [Rhizobium etli CIAT 652]
 gi|190699331|gb|ACE93415.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 299

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 14/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LRVF  VA   SFT AA++L +S +  S+ +  LE  +G +L  R +R ++LTE G   
Sbjct: 6   SLRVFCTVAELKSFTAAADRLGVSPAMASKHVMQLENRLGTRLLNRTSRHVSLTETGRLY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              T E+  +L+  +  +   +V P G L+++  +          L  +   YPD+ + L
Sbjct: 66  FNQTREMLERLDEVEDAIGNVTVAPRGTLKLSAPVWAATGYFTDMLAAYNRRYPDVCLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L  + +++  +  D A+R     +    L+ R L  +     A+P YL     P ++ E
Sbjct: 126 DLSGRLVNLVDEGFDLALRATSQDRLDPGLVARPLTNVQFRLMASPDYLARTGRPQNVAE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL-GSGIA 242
           L+ H L+ +  +      +     +++ P G  +I+   + ++   +IM    L G G+A
Sbjct: 186 LNGHALLRYSGV------NLGESMSLEGPDGPHKITFRTVMLSDNETIMHLAALRGMGVA 239

Query: 243 LLPDYIVKDNPNLVR--IMEDVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP ++ + +    R  I+   IT  F  T+Y  YP     + K++ F +F+    R+
Sbjct: 240 FLPAWMAEQDLEAGRLEIVLPAITLGFNSTLYAVYPSRKYLSAKVRTFIDFLTASTRE 297


>gi|16129289|ref|NP_415844.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108176|ref|AP_001956.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160839|ref|YP_001458157.1| LysR family transcriptional regulator [Escherichia coli HS]
 gi|170081007|ref|YP_001730327.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|193062709|ref|ZP_03043803.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194426053|ref|ZP_03058609.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|238900563|ref|YP_002926359.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|253773669|ref|YP_003036500.1| LysR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161408|ref|YP_003044516.1| putative DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|256022957|ref|ZP_05436822.1| predicted DNA-binding transcriptional regulator [Escherichia sp.
           4_1_40B]
 gi|260843677|ref|YP_003221455.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O103:H2 str. 12009]
 gi|297517004|ref|ZP_06935390.1| LysR family transcriptional regulator [Escherichia coli OP50]
 gi|300927844|ref|ZP_07143406.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300948415|ref|ZP_07162518.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300954582|ref|ZP_07167028.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|301022702|ref|ZP_07186552.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|301647169|ref|ZP_07246990.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|307137971|ref|ZP_07497327.1| LysR family transcriptional regulator [Escherichia coli H736]
 gi|331641895|ref|ZP_08343030.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
 gi|2495399|sp|P77333|YCJZ_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator
           ycjZ
 gi|1742185|dbj|BAA14921.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|1787589|gb|AAC74410.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|157066519|gb|ABV05774.1| transcriptional regulator, LysR family [Escherichia coli HS]
 gi|169888842|gb|ACB02549.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|192931831|gb|EDV84431.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194416108|gb|EDX32374.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|238862305|gb|ACR64303.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|242377106|emb|CAQ31833.1| putative transcriptional regulator LysR-type [Escherichia coli
           BL21(DE3)]
 gi|253324713|gb|ACT29315.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973309|gb|ACT38980.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253977523|gb|ACT43193.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|257758824|dbj|BAI30321.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O103:H2 str. 12009]
 gi|260449539|gb|ACX39961.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|299881147|gb|EFI89358.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|300318492|gb|EFJ68276.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300452090|gb|EFK15710.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300464129|gb|EFK27622.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|301074655|gb|EFK89461.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|315135969|dbj|BAJ43128.1| putative DNA-binding transcriptional regulator [Escherichia coli
           DH1]
 gi|315619412|gb|EFU99956.1| uncharacterized HTH-type transcriptional regulator ycjZ
           [Escherichia coli 3431]
 gi|323162459|gb|EFZ48311.1| hypothetical protein ECE128010_1360 [Escherichia coli E128010]
 gi|323942276|gb|EGB38447.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|323973562|gb|EGB68747.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
 gi|331038693|gb|EGI10913.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
 gi|332342929|gb|AEE56263.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 299

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|114328505|ref|YP_745662.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316679|gb|ABI62739.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 299

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 98/188 (52%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF+ AA  +++SQ  ISRQI  LE   G +L  R  R L LTE+G  L 
Sbjct: 8   MRVFLRVAELGSFSAAARGINMSQPMISRQIGMLEDHFGTQLVQRSTRHLHLTEEGEALR 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +LE  +  +   +  PSG++R+++    G   L G +  F  LYPDI I L 
Sbjct: 68  EHARRIIDQLEAAEEAIGRGARPPSGRVRLSSPTAFGL-YLSGQMAAFHQLYPDIDIALR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  D  D A+ +   +  +S+I RK+ +      AAP Y+    EP S  +L 
Sbjct: 127 LSDETVNLIEDGLDLALYVGG-VPETSMIVRKIGSARRLLVAAPCYMDGRAEPSSPAQLK 185

Query: 188 KHNLITFG 195
             + +T+ 
Sbjct: 186 DFDCLTYA 193


>gi|150397971|ref|YP_001328438.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029486|gb|ABR61603.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 304

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 142/292 (48%), Gaps = 16/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G  L  R  R  +LTE G   
Sbjct: 13  RIRAFIDVVDAEGFSAAARRIGKSKALLSKYVRELEDELGALLLNRTTRQFSLTEAGHTY 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121
           +R  SE+  +++     ++ S+    G+LRI         D+GQ+L+     +F   +P+
Sbjct: 73  YRSASEILKEIDNLADLVRASNSDLKGRLRITVPRTFVDADIGQSLI-----DFGKEHPE 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++ D++ +D+  +  D AIR+ + ++ S+LI RKL    +   A+P ++      +
Sbjct: 128 LSLEIVSDDRFVDLVEESFDVAIRITR-LEDSTLIARKLDDFQVLVCASPDFISRADPLI 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL K   I   D   +    + ++     P        ++VNS L   +  V G G+
Sbjct: 187 HPSELSKLPCIL--DTNGRSYSSWRFVEKDGSPFTVSVSGQIEVNSPLGAARAAVTGIGV 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LPD+I +    +  LV + +D +     +Y  YP       K++ F +F+
Sbjct: 245 AVLPDFIARPKIASGELVTLFDDFLPKDRGIYAIYPHRRYLPTKVRTFVDFL 296


>gi|21233096|ref|NP_639013.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770036|ref|YP_244798.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114950|gb|AAM42937.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575368|gb|AAY50778.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 311

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 142/297 (47%), Gaps = 25/297 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA    F+ AA+ L  S ++I+RQ++ LE  +G +L  R  R ++LT  G+ 
Sbjct: 5   DAMRVFVAVAERSGFSAAADALDRSTANITRQVAALEQRLGTRLLNRTTRRVSLTSAGTA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   L+  +  +   ++ PSG LR+   +  G   L   L  F   +P +++ 
Sbjct: 65  YYQRCLQLLADLDDLEATVGAQALAPSGLLRVNAPVSFGIVQLAALLPGFRARFPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L ++ +D+  +  D A+R+ R+P  + +LI R+L T+ +   AAP YL     P    
Sbjct: 125 LSLSDRLVDMVEEGFDVALRITRQP--APTLIARQLGTVRLVPCAAPAYLARAGTPQHPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRI---SCLQVNSYLSIMQYCV 236
           +L  H          +C+  +++  T D      P G+  +     L+ N+   +    V
Sbjct: 183 DLAGH----------ECLL-YHYAPTGDDVRFHGPDGDIDVRLRGGLRANNGHVLSAAAV 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+ + PD++  ++     LVRI+ D       +Y  Y        K+++F +++
Sbjct: 232 AGQGVVIQPDFLADEHIAAGRLVRILPDYHLADIGIYAVYTSRSHLAPKVRSFIDYL 288


>gi|264679752|ref|YP_003279661.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210267|gb|ACY34365.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 303

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 130/266 (48%), Gaps = 14/266 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ ++ +F  V   GS + AA QL ++ S++S+ I  LE + G+ L +R  R LTLT+ G
Sbjct: 3   DFRRMAIFAAVVERGSMSAAARQLDMTPSAVSQHIRQLEHDAGLTLLHRSTRQLTLTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +   + +       + EL     +PSG+LR+A      Q+     L  +L ++P+++
Sbjct: 63  QRFYTQCAAMCEAASRARAELAAEHQRPSGELRLAAPAGFTQHAAPA-LGRWLAMHPELR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK----NCRE 179
           ++L++D+  ID+     D A+R    +Q SS + R L        A+PH++K      R 
Sbjct: 122 LRLLMDDAPIDLIQARVDLALRFGN-LQDSSWVARHLGRSATVLCASPHWIKAHGSTPRH 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLG 238
           P  + +L    +    D       DF W           ++  L ++++ S + Q+C  G
Sbjct: 181 PSELAQLPWLEMSRSDD----AQADFLWRQQDTAQEYRLQVRPLMISNHRSAVQQFCEAG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMED 261
            G+ALL  + V    +  +LVR++ D
Sbjct: 237 LGLALLSAHDVAASLETGSLVRLLPD 262


>gi|157370514|ref|YP_001478503.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157322278|gb|ABV41375.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 309

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 137/298 (45%), Gaps = 28/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR GSFT AA QL ++  ++S+ I  LET +G++LF R +R + L+++G   +
Sbjct: 8   LPFFEAVARLGSFTQAASQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLSDEGHLFY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +    ++E    +++     PSG LRI         L+  +L EF  LYP++Q++L 
Sbjct: 68  QRVAPAMGQIEGAADDVRALHGHPSGLLRITLPQLAASLLVMPHLAEFQALYPEVQLELF 127

Query: 128 LDNKDIDISMDYADCAIRLRK---------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            D+   D+ +D  D  IR+           PI +    QR+++       A P YL    
Sbjct: 128 TDDHFSDLVLDSFDAGIRMHAMLPKDMIAVPIDNG---QRRMII------ATPGYLAQYG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVL 237
            PL+ Q L +HN + +   +    E   W    D  +     S  Q+ N    I    + 
Sbjct: 179 TPLTPQALYEHNCLRYRFPVSGKFEP--WYFRQDEELLMLEFSGSQIFNEDRLIKDAALA 236

Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI       V+   N   LV I+ D  +  P F +YF  P +     KL+ F +F+
Sbjct: 237 GLGITQRFSGTVQRELNSGQLVEILADYGSDFPGFFIYF--PASRHMPLKLRVFVDFM 292


>gi|110681298|ref|YP_684305.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109457414|gb|ABG33619.1| transcriptional regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 304

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 133/286 (46%), Gaps = 10/286 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +SFDW+++R F    + GSF+ AA  L  +Q ++ RQI GLE  +G+ L  R  RGLTLT
Sbjct: 6   ISFDWNQVRAFLATVQEGSFSGAARVLKTTQPTVGRQIGGLEKALGVTLVERSVRGLTLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      +        +     S   SG++ +  T  L   +L   LK      P
Sbjct: 66  EAGRDLLEHMRTMGEAATLISMVADGKSQDVSGEVTVTGTDLLSAAILPRVLKPLRQTAP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++++  ++  +++   AD AIR  +P Q   LI R L     + YAA  YL     P
Sbjct: 126 GIRVRILASSEMQNLTQREADIAIRHVRPDQ-PDLIARHLGDFRANLYAASDYLDRVGRP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--G 238
            + +++   + +   D   + M   + +    RP          ++S   ++ + ++  G
Sbjct: 185 HTPRDVATLDFVGNAD-PERLMAPLHNMGVPIRP------ESFVMSSANGVVAWELVKAG 237

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            G+++ P+ +   +P + R++ D  +  F ++      L+ + +++
Sbjct: 238 YGVSMQPEALGDADPGIERVLPDFPSLEFPMWLVTHRELQTSRRIR 283


>gi|215488798|ref|YP_002331229.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215266870|emb|CAS11311.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 323

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL  +L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPHLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|126668059|ref|ZP_01739022.1| transcriptional regulator, LysR family protein [Marinobacter sp.
           ELB17]
 gi|126627450|gb|EAZ98084.1| transcriptional regulator, LysR family protein [Marinobacter sp.
           ELB17]
          Length = 302

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 141/294 (47%), Gaps = 21/294 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D D ++ F  VAR  + ++AA +L L+ S++SR+++ LE  +G++L  R  R L+LT
Sbjct: 1   MSSDSD-MQFFACVARRLNLSNAALELGLTASAVSRRLTRLENRLGVRLLNRTTRRLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G      + ++  +++ T+  L  +S +P G LRI  T   G+  +   +  F    P
Sbjct: 60  SDGEVFLLASHDIIGRIKETEQSLSRASAEPQGLLRINATFQFGREYIAPAISRFARTNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q+QL L +   ++  +  D  IR   P  SS LI  +L+       AAP YL+    P
Sbjct: 120 EVQVQLELSDAPANMVEEGYDLNIRFGMP-SSSRLIVTRLLPNQRVLVAAPSYLRKHGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCV 236
             +++L +H  I    ++ +  E ++     D    R  G+     L  N     + + +
Sbjct: 179 TRLEDLTQHQCI----ILRQEREAYDIWRFDDGEHVRATGQ-----LSTNDGEIAVSWVL 229

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAF 286
            G GI L  ++ +  +    R+   V+ P  T    +Y  YPE L  + K++ F
Sbjct: 230 EGHGIMLRSEWDIARHVRTGRL--QVVLPEKTHEAGIYAVYPERLNLSAKVRLF 281


>gi|108763780|ref|YP_631354.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108467660|gb|ABF92845.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622]
          Length = 295

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 124/255 (48%), Gaps = 18/255 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++  F  V  +GSF      + L++S+  + ++ LE+ +G++L  R  R L+LT+ G  
Sbjct: 7   DEIFAFMAVVDAGSFVSGGRAIGLTRSAAGKALARLESRLGVRLLNRTTRHLSLTDDGRV 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H    +V   L+  +  + + +  P G LRI      G+  +   LK++L  +PD+Q++
Sbjct: 67  FHEHCQQVLAALDDAEASVGDHTGTPRGVLRITVPDAFGRLHVLPVLKKYLQTWPDVQVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++  DI  +  D A+R+      + L+ R +    +   AAP YL    EP +++E
Sbjct: 127 VSFTDRVADIIEEGYDLAVRINVTSTDTRLVSRLVAQHRVFVCAAPSYLAARGEPQTLEE 186

Query: 186 LDKHNLITFGD--------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           L  H+ + F          L PK         TV+   G+ R   L+++S  +I    V 
Sbjct: 187 LATHDCLLFSSRARRQRWRLRPKG----GAYVTVE---GQSR---LRLDSGEAIRDAAVA 236

Query: 238 GSGIALLPDYIVKDN 252
           G GIA LP ++V ++
Sbjct: 237 GLGIAFLPSFLVDED 251


>gi|134296861|ref|YP_001120596.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134140018|gb|ABO55761.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 324

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 7   MEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++       Q  + KPSG LR+     LG+ ++  +L  F   +PDI + L 
Sbjct: 67  EHCMKIIAEIAEVDASFQTGNRKPSGVLRVHMPNSLGRRVVLPSLSIFRQRFPDIALDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP  I +L 
Sbjct: 127 LSDRYVDPVEEGIDCMIRV-GPLEDSSMVARRIGMLKRVTCASPDYLARHGEPQEIADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F            W+  +D +P+       + VN   + +   + G G+     
Sbjct: 186 DHHAVNF--RASHGARPIPWVFMIDGKPVEVRMAGTVTVNDSDAYVTSGLEGFGMIQPTL 243

Query: 247 YIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V    +D  +LV ++ +       +   YP     + K++ F ++I
Sbjct: 244 FMVLPHLRDG-SLVEVLPECNPKPKPISIVYPHNRHLSQKVRVFADWI 290


>gi|262043902|ref|ZP_06016990.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330013282|ref|ZP_08307603.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|259038756|gb|EEW39939.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533553|gb|EGF60274.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 302

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 138/304 (45%), Gaps = 15/304 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  SG+F  AA  LH+++S++ + I+ LE  +G+ LF R  R   LT
Sbjct: 1   MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G + +    E   ++   +  LQ    +  G+LR++  +  GQ  +   L      YP
Sbjct: 61  EEGEQFYLQCREALERIREAEETLQRGKDEVQGRLRVSLPVLFGQRCVAPLLFRLSQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +++  +  D A+R+     + SL  R L    M   AA  YL+    P
Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGSLADTGSLRARALGEHGMVLCAAAEYLRQQPAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237
            +I  L++H   T G L    ++ +      D   GE R S    L  + + +I      
Sbjct: 181 QTIAGLNEHR--TLGYLHNGQLQKWQ---LYDPQQGEVRFSPQTWLIQDDFAAIAAAVQQ 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA----LKNTGKLKAFRNFI 290
           G GIA LPD++V     +  L +++       F ++  +PE      K    + A R  +
Sbjct: 236 GMGIAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEGPWLPQKTRAAIDALREGL 295

Query: 291 FLKA 294
            L A
Sbjct: 296 PLTA 299


>gi|254235539|ref|ZP_04928862.1| transcriptional regulator, puative [Pseudomonas aeruginosa C3719]
 gi|126167470|gb|EAZ52981.1| transcriptional regulator, puative [Pseudomonas aeruginosa C3719]
          Length = 301

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA +G F  AA Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    
Sbjct: 7   LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   LE     L      PSG LR++  + L    L   +  FL  YPD++++L+
Sbjct: 67  QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+  +  D A+R    +  S L+ R L+ +     AAP YL    +PL  + L 
Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F            W    DR  I  P     +V+S L++    + G G++L+P 
Sbjct: 187 EHECIRFS----LSGHADRWTFRKDRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       LV ++ D       ++  YP + +  GK + F +F+
Sbjct: 243 LYVQAELAEGRLVELLADWKADETAIHAVYP-SRQLAGKTRVFLDFL 288


>gi|330816734|ref|YP_004360439.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327369127|gb|AEA60483.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 295

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 123/268 (45%), Gaps = 14/268 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  +RVF  + R GS + AA  L ++ ++ISR+I  LE  +G KL  R   G  LT  G
Sbjct: 10  DWQDVRVFLALGRHGSLSAAARALGVNHATISRRIQSLEATLGEKLAERRPEGYVLTPAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++   V S++   ++T  +    +   P G +R+     L Q  L   L E  +L+P + 
Sbjct: 70  TRALSVASDMETAVQT--LGRGGTDDAPKGIVRVNAPPALSQAFLTRRLAEVPILFPGLD 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L  D + I +    AD A+R+ KP +    I + + ++    Y  P   +       +
Sbjct: 128 IDLATDLRSISLERHEADIAVRIDKP-EDGDFIAKPVGSMDFGFYGTPAVCER------V 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +  +   L+ F D     M D +WL    +   + RI+  + N++++       G G+A+
Sbjct: 181 EGGEAPILVGF-DEANSHMPDASWLG---QHYSQARIA-FRANNHVAQATAACAGVGLAM 235

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYF 271
           LP Y+ +  P L       + PS  ++ 
Sbjct: 236 LPHYVGRQLPELRACALSPVRPSRDIWL 263


>gi|294650182|ref|ZP_06727557.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823921|gb|EFF82749.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 310

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F    + GS+THAA+ L LS+S+I + I  LE ++ ++L  R  R L+LT++G  L 
Sbjct: 9   ISAFVASVKYGSYTHAAKHLGLSRSAIGKSIVRLEEQMEVRLLNRTTRSLSLTDEGRILF 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   LE     +    ++P G L++     LG   +   L  FL  +P ++  + 
Sbjct: 69  DYCQQILEGLEEVDHVMASRRLEPIGTLKVTAPHSLGHRYILPILDTFLKKWPGLKADIS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  +  D  IR+ +P   S L+ R +    M   A+P Y+K    P + ++L 
Sbjct: 129 FTDRFVDIIEEGFDIGIRVGEPKDDSRLLTRTIAWQKMQTCASPQYIKLYGSPQTPEDLA 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           K + I     +       NW    D  I    G  +   ++++S  +I+   V G GI  
Sbjct: 189 KFDTI----FLNGSNNRRNWKFKTDTGIYVFEGPEK---MKIDSSDAILASAVSGFGIIQ 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP YI +   D   L+ ++E        +   YP     + +++ F +++
Sbjct: 242 LPTYITEESIDQLQLIPLLEKYTVEPEPIRIIYPSKKHLSPRIRMFIDYL 291


>gi|156933413|ref|YP_001437329.1| hypothetical protein ESA_01231 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531667|gb|ABU76493.1| hypothetical protein ESA_01231 [Cronobacter sakazakii ATCC BAA-894]
          Length = 300

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 116/245 (47%), Gaps = 5/245 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  +   GS T AA  L  + S +SR ++ LET +G++L  R  R L+LT+ G   +
Sbjct: 11  VEIFVTIIEKGSITAAAVALGTTASVLSRALTRLETRLGVQLVRRTTRQLSLTQAGRHYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +   E  + ++Q    +  G +R++     G   L   L+ F   YP I ++L 
Sbjct: 71  EQACSAFSVFERAERDIQGRGAQTVGHIRLSAPTTYGHYRLPALLQRFAAHYPGITVELN 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+++D+  +  D AIRL   +  S L+ RKL    +   AAP YL+   EP ++  L+
Sbjct: 131 ITNRNVDLVAEGYDLAIRL-GTLPDSRLVARKLEEAPLCLVAAPAYLRQHGEPHTLAALE 189

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLP 245
            H  + F  ++P       W L     PI       +QV +  L ++   V G+GI    
Sbjct: 190 NHRCLPF--IMPSSGRIAQWSLCEEGAPIEWTPKGQIQVSDDILGVISLAVSGAGICQTY 247

Query: 246 DYIVK 250
           D+I +
Sbjct: 248 DFIAR 252


>gi|15677691|ref|NP_274852.1| LysR family transcriptional regulator [Neisseria meningitidis MC58]
 gi|7227112|gb|AAF42190.1| transcriptional regulator, LysR family [Neisseria meningitidis
           MC58]
 gi|316985464|gb|EFV64411.1| uncharacterized HTH-type transcriptional regulator yafC [Neisseria
           meningitidis H44/76]
 gi|325133502|gb|EGC56165.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M13399]
 gi|325139517|gb|EGC62057.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis CU385]
 gi|325200915|gb|ADY96370.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis H44/76]
          Length = 299

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G L + + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLSVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S +EL  H  + F +  P  +   N  A +D      +IS     S   I++  C+ G 
Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  L D++V ++       P L     D   P   VY  Y +   N  +L+ F +F+
Sbjct: 235 GIVCLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289


>gi|26247664|ref|NP_753704.1| putative transcriptional regulator YcjZ [Escherichia coli CFT073]
 gi|170681201|ref|YP_001743847.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|215486626|ref|YP_002329057.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218689318|ref|YP_002397530.1| putative nucleic acid-binding regulator [Escherichia coli ED1a]
 gi|218704847|ref|YP_002412366.1| putative nucleic acid-binding regulator [Escherichia coli UMN026]
 gi|227886235|ref|ZP_04004040.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|293409721|ref|ZP_06653297.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300897384|ref|ZP_07115811.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300971657|ref|ZP_07171530.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|301017579|ref|ZP_07182253.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|312966740|ref|ZP_07780958.1| uncharacterized HTH-type transcriptional regulator ycjZ
           [Escherichia coli 2362-75]
 gi|331646658|ref|ZP_08347761.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M605]
 gi|331672856|ref|ZP_08373642.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
 gi|26108066|gb|AAN80266.1|AE016760_125 Hypothetical transcriptional regulator ycjZ [Escherichia coli
           CFT073]
 gi|170518919|gb|ACB17097.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
 gi|215264698|emb|CAS09070.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218426882|emb|CAR07737.2| putative nucleic acid-binding regulator [Escherichia coli ED1a]
 gi|218431944|emb|CAR12829.1| putative nucleic acid-binding regulator [Escherichia coli UMN026]
 gi|222033133|emb|CAP75873.1| Uncharacterized HTH-type transcriptional regulator [Escherichia
           coli LF82]
 gi|227836439|gb|EEJ46905.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|281178520|dbj|BAI54850.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|284921202|emb|CBG34268.1| LysR-family transcriptional regulator [Escherichia coli 042]
 gi|291470189|gb|EFF12673.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300358868|gb|EFJ74738.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300400073|gb|EFJ83611.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|300411143|gb|EFJ94681.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|307553390|gb|ADN46165.1| transcriptional regulator [Escherichia coli ABU 83972]
 gi|312288204|gb|EFR16106.1| uncharacterized HTH-type transcriptional regulator ycjZ
           [Escherichia coli 2362-75]
 gi|312945965|gb|ADR26792.1| putative nucleic acid-binding regulator [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315295360|gb|EFU54690.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
 gi|315297248|gb|EFU56528.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
 gi|320195657|gb|EFW70282.1| LysR family transcriptional regulator YcjZ [Escherichia coli
           WV_060327]
 gi|323187563|gb|EFZ72872.1| hypothetical protein ECRN5871_4388 [Escherichia coli RN587/1]
 gi|330911195|gb|EGH39705.1| LysR family transcriptional regulator YcjZ [Escherichia coli AA86]
 gi|331045410|gb|EGI17537.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M605]
 gi|331070077|gb|EGI41446.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
          Length = 299

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|302188623|ref|ZP_07265296.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 297

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 129/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA +L +S S++S  + GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLQVARDQSFTKAATRLGVSPSALSHTMRGLEERMGLRLLARTTRNVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLTQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q+
Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W      R +          NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           +PD + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289


>gi|241205977|ref|YP_002977073.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859867|gb|ACS57534.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 299

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 122/247 (49%), Gaps = 10/247 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F     +G F+ AAE+LHL++S++ + I+ LE  +G++LF R  R  +LTE+G   +  
Sbjct: 9   IFVEAVEAGGFSAAAERLHLTRSAVGKTIARLEQRLGVRLFNRTTRMQSLTEEGRFFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 ++   +  L+       G+LRI+  +  G++ +   L   L  +P++++ L  +
Sbjct: 69  CLRAVEEIRLGEAMLESGRRDVRGRLRISMPVLFGRHCIAPTLARLLDEHPNLELDLSFN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  D  D  IR      +  L+ R +    M   A+P YL+   EP ++ ++ +H
Sbjct: 129 DRIVDLLEDGFDLVIRNGPLKDNPDLMARAIARQRMTVCASPAYLEKHGEPQTVFDIPRH 188

Query: 190 NLITF--GDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALLP 245
             I +  GD      +D  W+       G   +  + L+++   SI    V G G+A LP
Sbjct: 189 EGIVYRRGD------DDKGWIFPTAADPGRRLVPKARLRLDDLASISDAAVAGRGLAWLP 242

Query: 246 DYIVKDN 252
            ++V++ 
Sbjct: 243 CWLVREE 249


>gi|73540594|ref|YP_295114.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72118007|gb|AAZ60270.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 299

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 128/294 (43%), Gaps = 14/294 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F    R GSFT AA +LHL+QS+ISRQ++ LE+ +G KLF R  R L LT  G + 
Sbjct: 11  NLVAFEAAMRHGSFTRAAAELHLTQSAISRQVAQLESFLGRKLFIREPRALRLTVSGQRY 70

Query: 67  HRVTSEVYHKLETTQIELQES--SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               +EV  +L     E  E    V+    L +A +  +    L   L  F   +P+IQ+
Sbjct: 71  ----AEVVQRLLVGCAEATEDVMKVRSHTALTVACSTGVAVLWLTPRLASFRAAHPEIQL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI+++    +S    D  +   +    +    R+L    +    AP YL      L+  
Sbjct: 127 RLIVNDSLASLSAAEFDIGLYYLREGPPAGFAARRLYGEEVFPVCAPAYLGG--RALAPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243
            L    L+   D   + M    W A        PR + L  N Y  ++Q  + G GIAL 
Sbjct: 185 ALVNETLLMLDDGQRQWMSWQAWFAHQGVHDANPR-AFLTSNQYPILLQLAIEGQGIALG 243

Query: 244 ---LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + D  ++D   LVR  E   +     Y  +P         +AFRN++  +A
Sbjct: 244 WRHMIDGCLRDG-LLVRACEASASLGGGYYVVWPRDRMEPAAARAFRNWMVRQA 296


>gi|157371671|ref|YP_001479660.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323435|gb|ABV42532.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 319

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 129/285 (45%), Gaps = 11/285 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VA  GSF+ AA +L +  SS+ R +  LE+ +   LF R  RGL LT+ G  
Sbjct: 27  EHLPIFLEVALLGSFSAAARKLGMVPSSLVRHVDALESALDATLFIRSTRGLMLTDAGEM 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +   +   + EL   S +P G LRI+     G+  +   L      YP + ++
Sbjct: 87  LQARAATLLSDISDIRAELASLSDRPQGTLRISCLPTFGKTYILPLLPLLAERYPQLFVE 146

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D + +  D AIR+ +  + S L   ++ T      A+P YL     P  +  
Sbjct: 147 LDLTERQTDPTQELLDAAIRIGEQ-KDSGLYASRIATQRWVMCASPAYLARYGRPADLNA 205

Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H LI  +    P C     W   +  P+ +     L+ + + +  +  +LG GI  L
Sbjct: 206 LPEHRLIARYHKQQPAC-----WAQILSAPLMDRCSLVLRCDDFTAQREAALLGLGITFL 260

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P+++V  +     L+ ++ED       +Y   P A K + +L  F
Sbjct: 261 PNWVVGPDIQAGRLLPVLEDPRQEQQGIYLLRPVA-KVSARLNLF 304


>gi|322832115|ref|YP_004212142.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167316|gb|ADW73015.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 310

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 140/298 (46%), Gaps = 20/298 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR++  V   GSF+  A +  +S S++SR IS LE  +  +L YR+ R ++ TE G  L 
Sbjct: 12  LRLYVAVLDQGSFSEVARREAMSPSTVSRVISQLEQALQTQLLYRNTRAVSPTESGKLLA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V  +L+   ++LQE   +P G +RI   +  GQ  L   L E    YP + I+L+
Sbjct: 72  GHARQVLAQLDLATLDLQEQDSEPGGLVRINAPVVFGQRHLAPWLHELSTRYPRLNIELM 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  ID   D  D  IR+   +  S+L  R L   +    A+P YL    +P + ++L 
Sbjct: 132 QTDDFIDPLQDSVDLLIRI-GVMADSTLQARTLGHQNFRLAASPAYLARAGKPETPEDLA 190

Query: 188 KHNLITF-GDLIPK----CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+ + F G   P+       +  W +   R         L  N+  ++ Q  + G G+ 
Sbjct: 191 SHSCLVFKGFAGPQRWYFRQPEQEWHSMTLR-------GLLTSNNAETLTQAGIDGMGLV 243

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFLK 293
           + P +++ D   +  LV ++E+    +     T+   YP + + + K++A  +F+  K
Sbjct: 244 VFPTWLIGDALRDGRLVSVLENYQVSTSPEPQTISALYPNSRRPSIKVRAVIDFLLEK 301


>gi|283836411|ref|ZP_06356152.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291067785|gb|EFE05894.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 313

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE+ +G  L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILESTLGTTLLNRSARGVVLTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +    ++ +   +P+G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHAQAILAGYQHLVDDVTQLKTRPAGMIRIGCSFGFGRSYIAPAITELMHSYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID++ D  D  IR+   I     I   L        AAP YL+   EP+++QEL 
Sbjct: 131 LYDRQIDLAQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPTYLQKYGEPITLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     +++  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGVWELDNGQEKKSVKVAGHLSSNSGEIVLQWALQGKGIMLRSE 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+    +  LVR++ D    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVQPFLASGELVRVLPDY-AQSANIWAVYKEPLYRSVKLRVCVEFL 292


>gi|258624253|ref|ZP_05719202.1| Transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258583404|gb|EEW08204.1| Transcriptional regulator, LysR family [Vibrio mimicus VM603]
          Length = 295

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 127/280 (45%), Gaps = 17/280 (6%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSVKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  SGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+IQLI         +       R    + S S     L       YA+P YL+    P 
Sbjct: 121 IRIQLITTTPGQLPELHLDLFISREIDQLNSLSFKATPLFEHQAGFYASPSYLEKHGTPK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           ++QEL +HN++ +G+      + +  + T        RI+        +  ++      G
Sbjct: 181 TLQELTQHNVLCWGE------QTYREVKTAQ----GKRITLTGNFATTNPEALFYAGKAG 230

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            G+ +    ++K+     NLVRI+ DV     TVY  YP+
Sbjct: 231 MGVIVTGHIMIKEELKQGNLVRILPDVTIDQATVYAYYPK 270


>gi|218462329|ref|ZP_03502420.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Kim 5]
          Length = 300

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 132/264 (50%), Gaps = 18/264 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G F+ AA    ++ S++S+ ++ LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERGGFSAAAAVRRMTPSAVSKLVARLEARLGVRLVNRSTRRLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +  +  +   +   + E Q SS  + +G++RI T+   G ++L   L  F+ L+P + + 
Sbjct: 71  YERSIAILADI--AEAERQASSGEEAAGRIRINTSGSFGNHVLAPLLPAFMALHPAVTLD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +K ID+  + AD AIR   P++SSSLI RKL        A+P YL+   EP ++ +
Sbjct: 129 IAHTDKVIDLMEERADVAIRA-GPLKSSSLIARKLGATGKIIVASPEYLRRHGEPRTLAD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241
           L +H  I F     + +E +       R  GE    P    +QV    ++    + G+G+
Sbjct: 188 LRRHCRIGFS--YARAIEGWPM-----RESGETVTIPITPGIQVGDGEAMRHLALSGAGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDV 262
           A L  + V+   +   LV ++E+ 
Sbjct: 241 ARLAAFTVRADIEAGRLVPVLEEA 264


>gi|254250472|ref|ZP_04943791.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124879606|gb|EAY66962.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 307

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 127/274 (46%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L  F  VAR  +FT AA QL +SQS++SR +  LE  +GI L  R  R ++ TE G
Sbjct: 8   DFNDLVAFMAVARERNFTRAAAQLGVSQSALSRTVRALEARMGIPLLTRTTRSVSPTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  + ++E     L+  + +P+G +RI  T       +   L+  L  YP ++
Sbjct: 68  ERLLESIAPRFQEIEAELESLRAMTDQPAGNVRITATDYAANEYVWPRLQPLLRRYPALK 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ D    D+     D  IRL   +    + QR    + M    +P YL +     + 
Sbjct: 128 VELVNDYGLTDLVAGRYDIGIRLGDQVARDMVAQRIAPDMTMSIIGSPEYLASRPVTKTP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L +HN I     +P      +W  +  R   + R+   L  N+   ++   + G G+A
Sbjct: 188 QDLTQHNCINL--RLPTRNALLSWELSKGRRELQVRVEGQLTFNNVYQMVDAALAGFGLA 245

Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273
            +P  +V  +    R   ++ED   P+F  +  Y
Sbjct: 246 YVPKDLVAHHVEAGRLGWVLEDWF-PTFVGHHVY 278


>gi|251836996|pdb|3HHG|A Chain A, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251836997|pdb|3HHG|B Chain B, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251836998|pdb|3HHG|C Chain C, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251836999|pdb|3HHG|D Chain D, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251837000|pdb|3HHG|E Chain E, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251837001|pdb|3HHG|F Chain F, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251837002|pdb|3HHG|G Chain G, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251837003|pdb|3HHG|H Chain H, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis
          Length = 306

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G L + + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLSVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S +EL  H  + F +  P  +   N  A +D      +IS     S   I++  C+ G 
Sbjct: 180 QSTEELAGHQCLGFTE--PGSL---NTWAVLDAQGNPYKISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  L D++V ++       P L     D   P   VY  Y +   N  +L+ F +F+
Sbjct: 235 GIVCLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVY--YSDKAVNL-RLRVFLDFL 289


>gi|152986169|ref|YP_001345594.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961327|gb|ABR83352.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 296

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 132/285 (46%), Gaps = 20/285 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GS   AAE L L+ S++S+QI  LE+   + L +R  R LTLTE G   +R 
Sbjct: 9   IFATVVDKGSMAAAAESLGLTPSAVSQQIRRLESRAQVTLLHRTTRRLTLTEAGEAFYRS 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +++    E  +  L E    P G+LR+A  + L  +L+   LK  L  +  +++QL   
Sbjct: 69  CAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGLSGSLITQALKPLLEDHRQLRLQLFFQ 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ ID+  +  D AIR+   +  SSL+ R L   +    AAP YL+  R PL   E    
Sbjct: 129 DERIDLVAERIDLAIRVGN-LADSSLVARHLGDWNHILCAAPGYLRQ-RAPLKRPE---- 182

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVLGSGIA 242
            L+    +       FN L T+    G       EPR++    N  L++ Q+ + G G++
Sbjct: 183 QLLELDWIALNTASQFNLL-TLTGADGEVCKLRLEPRVAA---NGMLAVRQFTLDGLGVS 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
             P   V+   D   L R++ +   P   ++   P       K+K
Sbjct: 239 CQPLPEVREALDAGRLQRLLPEWKLPDLGIHAVTPRRDAQPAKVK 283


>gi|90023617|ref|YP_529444.1| transcriptional regulatory protein [Saccharophagus degradans 2-40]
 gi|89953217|gb|ABD83232.1| LysR, substrate-binding [Saccharophagus degradans 2-40]
          Length = 315

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 146/290 (50%), Gaps = 22/290 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD LR F  +AR GS + A+ +L ++ S+++R+I+ LE + G+KLF R   G  LTE G
Sbjct: 19  NWDDLRYFLELARCGSLSGASRELGVNHSTVARRIAALEKKHGVKLFNRQPNGYQLTEAG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +++   E+  + +T +  L     + SGKL +    +L  + +   L++F   YPD+ 
Sbjct: 79  DVIYQHALEIEQQNQTVERLLYAGDTRLSGKLVVTMPHELANHCIIPYLQDFTGKYPDVD 138

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++     ++S   AD A+R+  P    +L+ +KL  +    Y +  +          
Sbjct: 139 LELVVSPGLKNLSAREADIAVRV-TPAPPETLVGQKLANLRHAVYFSKQH---------P 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q L +  +I +        +D N  A   +     ++  L+V+   S+     +G GIA 
Sbjct: 189 QVLAEQKIIIW-------RQDTNPPAWAQQHFPNAKV-VLKVDDLASMYAAVKVGIGIAR 240

Query: 244 LPDYIVKD--NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y+     + ++ + ++  +TPS + ++  +   L+ T +++AF+ F+
Sbjct: 241 MPCYLPDSVLDADIFK-LDLALTPSDWGIWVLHHADLRETARVRAFKQFL 289


>gi|70731062|ref|YP_260803.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345361|gb|AAY92967.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 305

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 147/301 (48%), Gaps = 14/301 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F V A+ GSF+ AAEQL  + S++++ ++ LE E+G +LF R  R + LTE G  
Sbjct: 5   NALKMFVVTAQLGSFSRAAEQLGKTPSALTKAVNHLEAELGSRLFERSTRRIVLTEIGRL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +LE    E+++      G L++   +  GQ  L      FL  YP I +Q
Sbjct: 65  YLETARQVLQRLEEVGEEVEQLQHGLRGNLKVTAPLAYGQAFLDQVCGGFLEQYPQINLQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +++     D A+R         LI R + +  +   A+P YL     P++ Q 
Sbjct: 125 VDLCDEFVNLLESGYDLALR-EGHDDLPGLIARVVGSNRLALCASPAYLARKGRPVTPQT 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H  + +    P    +F W+    + +   +P+   L+ ++Y  ++   + G G+  
Sbjct: 184 LEEHEWLLYRH--PLLSREFWWVERDGQRLSLPQPQAPRLRSDNYDLLLANALAGRGLLH 241

Query: 244 LPDYIVKD---NPNLVRIMED-VITP-SFT--VYFCYPEALKNTGKLKAFRNFI--FLKA 294
            P +       +  LVR+M D  I P SF   +   YP   + T K++AF +++  FL +
Sbjct: 242 TPLWSAAPYLADGRLVRVMADYAIDPDSFGPHILAVYPSHRRATAKVQAFIDYVSGFLAS 301

Query: 295 R 295
           R
Sbjct: 302 R 302


>gi|13472958|ref|NP_104525.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023705|dbj|BAB50311.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 311

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 9/285 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  V  +GSFT AA++L ++++ +S Q+S LE E+G  L  R  R +T TE G  
Sbjct: 8   NRLVYFTTVMEAGSFTSAADRLGVAKAVVSHQVSKLEDELGATLLQRTTRRVTPTEDGRL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  + E    E+   +V+PSG LR+   +D G  ++   +  +L  YP ++++
Sbjct: 68  FYDRAMIILREAEAAYGEISHGAVEPSGTLRLTAPLDYGTRVVAPVMAAYLKAYPQMRVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            I D+   ++  +  D  IR+   +  SS   R+L TI     A+P +  +   P     
Sbjct: 128 AIFDDAVSNLVDEQIDLGIRVGW-LADSSNQARRLGTIRQIVVASPTFAASL--PADANP 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244
               +L   G+   + +    WL + +       ++ + V         CVL G G+ + 
Sbjct: 185 NQARSLAWVGNAQLRGVG--QWLFSRNGETVLTELNPVVVCDKSPAAYACVLAGIGLGIF 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           PDY V ++     LVRI      P+  ++  +P A     K++AF
Sbjct: 243 PDYAVDEDIAGGRLVRIFAQWTLPTGGIHAVFPPARFRPAKVRAF 287


>gi|91213027|ref|YP_543013.1| transcriptional regulator YhjC [Escherichia coli UTI89]
 gi|117625804|ref|YP_859127.1| putative DNA-binding transcriptional regulator YhjC [Escherichia
           coli APEC O1]
 gi|218560596|ref|YP_002393509.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|237703290|ref|ZP_04533771.1| transcriptional regulator YhjC [Escherichia sp. 3_2_53FAA]
 gi|306816127|ref|ZP_07450265.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
 gi|91074601|gb|ABE09482.1| hypothetical transcriptional regulator YhjC [Escherichia coli
           UTI89]
 gi|115514928|gb|ABJ03003.1| putative DNA-binding transcriptional regulator YhjC [Escherichia
           coli APEC O1]
 gi|218367365|emb|CAR05144.1| putative DNA-binding transcriptional regulator [Escherichia coli
           S88]
 gi|226902554|gb|EEH88813.1| transcriptional regulator YhjC [Escherichia sp. 3_2_53FAA]
 gi|305850523|gb|EFM50980.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
 gi|307628600|gb|ADN72904.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UM146]
 gi|315286209|gb|EFU45645.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|323949762|gb|EGB45646.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323954937|gb|EGB50717.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
          Length = 323

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGITYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|294490372|gb|ADE89128.1| transcriptional regulator, LysR family [Escherichia coli IHE3034]
          Length = 299

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGITYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 67  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|271499940|ref|YP_003332965.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343495|gb|ACZ76260.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 300

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 4/193 (2%)

Query: 5   WDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +++L      AR+G   S+T AA  L +S S+IS+ I  LE  +G+ LF R  R L LT 
Sbjct: 7   FERLTGLIAFARAGALGSYTAAARSLSVSPSAISKSIQRLEKHLGVTLFTRTTRSLVLTA 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +LH    ++    E  +   + SS +P+G LRIA ++ +G +++   L EF  L+P 
Sbjct: 67  AGRELHERALQLLRDAEEIEQIAKRSSAEPAGMLRIAASLPVGIHMIAPVLAEFCALHPK 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ + I  +  D A+R+   +  S+L+ R+L    +  YA+P YL +   P 
Sbjct: 127 VTIDLRLSDRVVSIVDENIDIAVRIGD-LADSNLLSRRLPPYQIGCYASPEYLAHSPLPT 185

Query: 182 SIQELDKHNLITF 194
              +L  H  I  
Sbjct: 186 HPNDLIGHKTINL 198


>gi|254472558|ref|ZP_05085957.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211958022|gb|EEA93223.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 299

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 141/301 (46%), Gaps = 16/301 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++VF  VA   SF  A+++L LS  +++R ++ LE  +G +LF R  R + LT+ G  
Sbjct: 5   ETMQVFVEVAERESFVEASKKLGLSAPAVTRSVARLEQSLGTRLFNRTTRHVRLTDAGRH 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   ++  +  +  S  KP G+L I   +  GQ  +   + ++L LYP++ + 
Sbjct: 65  YLCDVKGILESVDQAEAAVTGSFAKPIGELSITAPVLFGQKYIIPLITQYLDLYPEVSVN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +  ++ +++  D  D AIR+   +Q SSL   ++ +I     AAP Y      P +  +
Sbjct: 125 AVFYDRIVNMVEDNLDVAIRIGN-LQDSSLYATRVGSIRRVICAAPEYFAEYGVPQTPSD 183

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H +I      P  +E  N W  + ++      +P + C   N   + +Q    G+GI
Sbjct: 184 LADHKIIQ-----PTAVETSNQWKFSGEKSEVVKIKPHLRC---NQNCAAIQAATGGAGI 235

Query: 242 ALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             L  Y + KD  N  L   +E+       V+  Y E  + + K+++F +F   + RD  
Sbjct: 236 TRLLSYQVAKDVANGALQLALEEYEPDPLPVHIVYMEGRRASAKVRSFVDFAAKRLRDNP 295

Query: 299 F 299
           F
Sbjct: 296 F 296


>gi|323529807|ref|YP_004231959.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323386809|gb|ADX58899.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 341

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 137/291 (47%), Gaps = 10/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LHR 68
            F  VA  GSF  A E+L + +S++SR +  LET++  +LF R  R   LT++G +    
Sbjct: 35  AFMAVATEGSFAKAGERLGIGRSAVSRNVQKLETQLSTRLFLRTTRTTNLTQEGERFFEN 94

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               V H +E     L      P G LR+ +T+  G+ ++   L +F   YPDI + L+L
Sbjct: 95  CNRGVTHIVEAMNDMLDLREGPPRGFLRVCSTVGFGRKVVAPLLFKFSEAYPDIAVDLLL 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++  D + +  D A R    I+ S +I ++L+ + M   A+  Y +    P S+++L++
Sbjct: 155 DDRPADFAAEQIDVAFR-DGCIEDSCIIAKQLIPMQMLLCASRAYAEERGLPSSLEDLEQ 213

Query: 189 HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H+ I       + +E DF     + + +   R   L  N    ++Q  + G G+A +P Y
Sbjct: 214 HDCINL-RFNGRVLEWDFKLDGRMRKYLPNAR---LTFNDANLVLQAVLEGRGVAQMPGY 269

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + D      LV  +   +      Y CY        +++ F +F+  + R
Sbjct: 270 QISDYLERKELVPALRRYVPDDRGHYICYRCRQNLPSRIRVFVDFMTAEIR 320


>gi|209519759|ref|ZP_03268546.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499832|gb|EDZ99900.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 302

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 11/292 (3%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V   GSF  AA+ L  S ++++R ++ LE  +G +L  R +R L+LTE 
Sbjct: 2   DRLRAFEVFVTVVNRGSFARAADALETSPANVTRYVNELEAHLGARLLNRTSRRLSLTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   +  T+  +  +S++P G+LRI   +  G   L     +F+  YPD+
Sbjct: 62  GETLYSRCKAILEDVAETEGLVSTTSIEPRGRLRINAPVSFGIRYLAPLWPQFMQHYPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +DI  +  D AIR+ +   +     RKL T      A+P Y+K    P +
Sbjct: 122 ELDITLIDRVVDIVEEGFDLAIRISR-AGTVDHAARKLATSRNILCASPDYVKRWGHPET 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +L  H  I +         D   L   +       ++C +  N+  +     + G G+
Sbjct: 181 PADLLGHRCIGY---TYAATADEWQLMDHNGKSHAVEVNCHMHTNNGDTARGAALAGHGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P +++ ++     LV+++ +   P   V   YP     + K++A  +F+
Sbjct: 238 IWQPTFLIGEDLRAGRLVQLLPEYRLPDIDVLALYPSRRHVSAKVRAAVDFL 289


>gi|193068517|ref|ZP_03049479.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|192958168|gb|EDV88609.1| transcriptional regulator, LysR family [Escherichia coli E110019]
          Length = 323

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++  +  R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALSAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|171317475|ref|ZP_02906666.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097371|gb|EDT42215.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 295

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 13/250 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R + G+E  +G +L  R  R L+LT+ G   H
Sbjct: 7   MRLFIKVAELHSFARAATELNISNSSATRLVMGIEDRLGARLLNRTTRSLSLTDAG---H 63

Query: 68  RVTSEVYHKLETTQIELQESSV-----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              +++ H +E  +I+  E ++     +P G L+IA  +  G ++L   +  F  L+P I
Sbjct: 64  LYLAQIRHVIE--EIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTLHPAI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++ + ++ +D+  +  D  + L + I +++LI R L  + M   AAP Y+     P+ 
Sbjct: 122 VPEVTIVDRHVDLVSEGFDVGLLLSQRISTNTLITRPLTRLKMIVCAAPRYVDARGAPIH 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  +TF          F+   T  R    P  S    N  L I  + + G GIA
Sbjct: 182 PHDLASHAYLTFHADFAGEYLSFDHEPT--RVAVRPNKSASSNNIGL-IRNWALSGMGIA 238

Query: 243 LLPDYIVKDN 252
           +LPD++V+ +
Sbjct: 239 VLPDFLVESD 248


>gi|312959577|ref|ZP_07774094.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311286294|gb|EFQ64858.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 301

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 14/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L +R  R L+LT  GS+  
Sbjct: 7   MRVFVTVVDLGSQSAAADHLDLSRPVVSRYLAELEDWVGARLLHRTTRKLSLTAAGSETL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++       Q  + E    P G LR++ +   GQ  L   + E++  YP + + L 
Sbjct: 67  PRCRQLLELCGDMQAAVSEPDDAPRGLLRLSVSTSFGQAQLAEAIAEYVKRYPLVTVDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  +  D AIR    +   +LI R+L        A P YL+    P  +++L 
Sbjct: 127 MLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLTVCRSVVCATPAYLREHPAPQKVEDLA 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +HN +T   FG  +    E+   ++        P    +  N   ++++  + G G+A+L
Sbjct: 186 RHNCLTHSYFGKSLWHFEENGEHVSV-------PVHGNITANEASTLLRVTLAGVGVAML 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y   D+     LVR++  V      +Y  Y         L++  +++
Sbjct: 239 PSYQAGDHIRRGELVRLLPQVEPRQMNIYAVYASRKHMPSALRSLLDYL 287


>gi|300693925|ref|YP_003749898.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299075962|emb|CBJ35273.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 300

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 124/279 (44%), Gaps = 14/279 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR GSFT AA +L ++QS++S+ +SGLE  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLAFVTVAREGSFTRAAARLGVTQSALSQTVSGLEARLKIRLLMRTTRSVSATAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +     + ++ET    L E   KP+G +RI     + + +L   L   L  YPDI+
Sbjct: 65  ERLVQAIGHRFDEIETELDALTELRDKPAGTVRITCGDQVLKTVLLPKLTPLLQAYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  ++    DI  D  D  +R    +    +  R  + + M   A+P Y      P + 
Sbjct: 125 LEFDINYGFRDIVADRFDAGVRFSNTVDKDMIAVRIGLDMRMAVVASPTYFAEHPAPKTP 184

Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++L  H  I     T+G L      D        R +       L +N+   I      G
Sbjct: 185 RDLVHHRCINIRFPTYGGL------DVWEFERRGRKLKIRVDGQLVLNTTPHIAAAAANG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            G+A LP+       +   LVR++ED   P    +  YP
Sbjct: 239 LGVAYLPEDEFSPHIEEGRLVRVLEDWCPPFSGYHLYYP 277


>gi|241662987|ref|YP_002981347.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240865014|gb|ACS62675.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 300

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 128/294 (43%), Gaps = 16/294 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS + AAE L +S++ ++R ++ +E   G +L +R  R + LT  G      
Sbjct: 9   VFVAIVERGSLSAAAEALGMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTPAGEATLAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++        +     +  P G LRIA    L Q  L   +  +L  YP   + L++D
Sbjct: 69  CRQMLEIASQMAVADGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQTAVDLVVD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ I++  +  D A+R+   +   +LI R L        AAP YL     P  + +L  H
Sbjct: 129 NRTINLVEERIDLAVRITNDLD-PNLIARPLGLCESVVVAAPSYLAAHGTPRRVPDLAVH 187

Query: 190 NLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           N +T   FG  + K  E     A  D P+G      L  N  + ++     G+G+AL P 
Sbjct: 188 NCLTYSYFGKSLWKFTEAKTG-APSDVPVG----GNLSANESMVLLAAAREGAGVALQPV 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +       +  LVR++ D +  +  ++  Y    +    L+A  +F+     DW
Sbjct: 243 FAAAPLIASGQLVRLLPDHVPQALGIHGVYSSRRQMPAALRAMLDFLV----DW 292


>gi|330816209|ref|YP_004359914.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327368602|gb|AEA59958.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 332

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 138/289 (47%), Gaps = 18/289 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +A+ GS + AA  + L+  + ++++  LE  +G +L  R  R ++LT +G    R  
Sbjct: 12  FVQLAKLGSLSGAARSMGLTPPAATKRLGILEARLGARLVNRTTRSISLTPEGETYARYA 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  ++   +  +  +   P G+LR+  T+  G+  +   + EF   YP + +Q ++ +
Sbjct: 72  ARILEQVREMEDAIAGTPADPHGRLRVNATLGFGRTTIAPLVSEFAKRYPHVDVQFVVTD 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           K +D+     D AIR  + +    L  R+L++      A+P YL+    PL  ++L  H 
Sbjct: 132 KPVDLVEGGFDMAIRFGE-LPDGRLRARRLMSNRRFLCASPKYLERAGTPLRKEDLVAHR 190

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGIALL 244
            I     I    +D + +      I +  +  L+VN  LS      ++++ + G GI + 
Sbjct: 191 CI-----IHSQNDDAHGVWNF---IQDDHLEALKVNGSLSSNDGDIVLRWALDGHGILIR 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ +     +  L  ++ +V+ PS  +Y  YP   K + + +AF +F+
Sbjct: 243 SEWDLAKYLQSGRLRLVLPEVVLPSADLYVYYPGQRKQSARSRAFIDFL 291


>gi|319782542|ref|YP_004142018.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168430|gb|ADV11968.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 297

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 12/296 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V    SFT AA  L L +S+ +  I  LE  +G +L  R  R +  T+ G  
Sbjct: 5   DTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQDGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    +  ++E  +   +  + +P G LRI  +  L +  L   L EFL  YP I +Q
Sbjct: 65  YYRRCLSILAEIEDAEAAFR--NAEPFGLLRIDASTLLTRTFLLPRLPEFLDRYPRIDLQ 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC IR+ +P   S +I R+L  IH    A+P YL+    P S   
Sbjct: 123 IGQSDRLVDLVREGVDCVIRVGEP-PDSGMIMRRLAMIHEITCASPAYLERHGTPASPDA 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           LD H  + F  +  +  E   +  TV   I E R+   +  N+  +      LG G+   
Sbjct: 182 LDGHQAVGF--VSSRTGETLPFEFTVAGNIREVRLPGRVAANNSDTAADLARLGLGLIQA 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKA 294
           P Y  + +     LV ++ D       +   YP+  + + +L+ F ++   IF +A
Sbjct: 240 PRYRFEKDLAEGTLVEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWASRIFAEA 295


>gi|296100376|ref|YP_003610522.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295054835|gb|ADF59573.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 315

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 8/244 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF     +GSF  AA +LHLS+S++ + I+ LE  +G++LF+R  R  +LT+ G+  +  
Sbjct: 10  VFVAAVEAGSFAQAAIRLHLSRSAVGKSIARLEERLGVRLFHRTTRSQSLTDNGALFYER 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 ++   +  L+    + SG+LR+A  +  G+  +   L E    +P +++++   
Sbjct: 70  CLRALEEIRGAESLLETGKQQISGRLRVAMPVLFGRQCVAPLLIELAQEHPGLELEMSFS 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R      SS L+ R+L    M   AAP YL+   +P ++ +L  H
Sbjct: 130 DRVVDLVEEGFDMAVRNGTLQDSSVLVVRRLGEHRMVLCAAPEYLQKSGQPDTVADLPHH 189

Query: 190 NLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             I +   G ++P  + D    +    P      S L ++   +I    + G GIA LP 
Sbjct: 190 TAINYLRAGRVLPWQLMDNEGRSHTFTP-----RSSLNMDDLQAICDAALAGYGIAWLPC 244

Query: 247 YIVK 250
           ++ +
Sbjct: 245 WMAR 248


>gi|227326914|ref|ZP_03830938.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 298

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 140/295 (47%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F VV  +GS T AAEQL  + S ISR +  LE ++G  L +R  R L+L+
Sbjct: 1   MKVTLEELQAFVVVIDTGSITAAAEQLGQTTSGISRALRRLEDKLGTTLLHRTTRRLSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        +V H +E  + ++     +PSG+LR+ +     Q+++   + EF   YP
Sbjct: 61  EEGMMFLEHARDVIHAVEHAEEQVLLRHEQPSGRLRVNSGSAFMQHVIVPLVPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  ++  ID+   + D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 KIVLELNTNDFIIDLLEQHTDIAIRI-GTLKDSTIHARPLGASKLRIVASPDYLEQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +++ L  H  + F        E  N W          P    L  ++   + Q  + G 
Sbjct: 180 ATVESLADHRCLGFTQ-----SESLNHWPLRHGLQDFYPVTPVLLASNGEILRQLALQGE 234

Query: 240 GIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  + +++++D+    R++    E+ +  S  VY  Y    +   ++  F +F+
Sbjct: 235 GIVRMSNFLIRDDLATGRLVPILTEETVEASLPVYAVYYRNSQLAARITCFLDFM 289


>gi|146309378|ref|YP_001189843.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145577579|gb|ABP87111.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 352

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 132/291 (45%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  +  +GS + AA QL+ +Q ++SR++  LE  +G++L  R   G+ LT  G + +
Sbjct: 46  LRTFVRIVDAGSLSAAAAQLNTTQPTVSRRLQTLERSLGLQLLNRTTHGMQLTGDGERCY 105

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V       + EL  +   P G LR+      GQ+ L   L E+L  YP + ++ +
Sbjct: 106 TYARQVLESWTEMEDELIGAREDPRGTLRVQVPHAFGQDQLIAPLGEYLRRYPKVSVEWV 165

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D + +  DCAI++   I+  S++  +L  +     AAP  L +   P S ++L 
Sbjct: 166 LHDRSPDFTAEGIDCAIQV-GFIEDPSVVAIRLGEVPRIVVAAPELLGDEPLPASTEQLQ 224

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +   +        +++  C+ D        R   +PR+S    +S  ++    + G G  
Sbjct: 225 RLPWLALRTYYTDEVVLTCLRD----GRSHRFAIQPRMS---TDSLYALRSAALAGLGAC 277

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   +IV    +   LV+++         VY  YP A     KL+ F   I
Sbjct: 278 VSSAWIVARDIEEGRLVQLIPQWQAAPLPVYLIYPHARSYPAKLRLFAELI 328


>gi|332526828|ref|ZP_08402928.1| transcriptional regulator [Rubrivivax benzoatilyticus JA2]
 gi|332111229|gb|EGJ11261.1| transcriptional regulator [Rubrivivax benzoatilyticus JA2]
          Length = 298

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 133/288 (46%), Gaps = 4/288 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+   VA  GSFT AA++L L ++++S  +  LE  +G +L  R  R ++LT+ G  
Sbjct: 4   EDLRIVLRVAELGSFTEAAQRLGLPRATVSTAVRRLEERLGARLLQRTTRRVSLTDDGRL 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V   L+  +   Q+     +G+LR+   + + + L+   L EFL L+P + ++
Sbjct: 64  FVERCQDVLADLDELRTMFQQQPQALTGRLRVDMPLAMARALVLPRLPEFLALHPGLAVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D   +  D  IR+   + +  L+ R L    M   A+P Y+    EP S+++
Sbjct: 124 IGAADRRVDPVREGYDAVIRVGA-VVAEQLVGRPLGAYTMVNVASPGYVARHGEPRSVED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+ +   +      F +LA             + VN+  + +  C  G GI  +P
Sbjct: 183 LAAHRLVHYQPNLGDRPAGFEYLAADGSLRSVTMAGVVTVNATDAYLAACEAGLGIIQIP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   +   +   LV ++   + P   V    P       +++AF +++
Sbjct: 243 EASARPGLEAGRLVALLPAFVPPPMPVTLLLPHRRHLPRRVRAFADWV 290


>gi|330446400|ref|ZP_08310052.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490591|dbj|GAA04549.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 306

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 137/294 (46%), Gaps = 20/294 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F + A   SFT AAE + L+QS++S +I  LE  +G++LF R  R L LT++G +L 
Sbjct: 14  LHCFLIAAEQMSFTRAAEVMFLTQSAVSHKIKNLEDALGVQLFIRQPRKLILTDEGVRLK 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +V +  +  +     +L+  +V+ SG + I+      Q  L   LK F+ LYP ++I L 
Sbjct: 74  QVLAANFGDIAYEIRDLK--NVELSGDINISVPPTFAQTWLLPRLKSFIDLYPALRIHLR 131

Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             N  +D   +  DCAI   K     + +  L+   +  +  H YA  H L +  E L  
Sbjct: 132 TRNDLVDFQTESFDCAIYFGKGEYQGLHTCKLMDESMQPVCSHDYAVAHNLYDHPESL-- 189

Query: 184 QELDKHNLITFGDLIPKCMEDFN--W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
                 + +   D  P      N  W L      I  P   C    S L+ +Q    G G
Sbjct: 190 -----MSCLLLHDAAPWARAGRNDEWQLWAEQYGIQLPESECTFDRSDLA-LQAAECGMG 243

Query: 241 IALLPDYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
           +A+     + +     R++   D++T S F+ Y      ++NT K+KAFR+++F
Sbjct: 244 VAMGRQSFIAEKLAQQRLVTPFDMMTSSPFSYYVVCRHNMQNTPKIKAFRDWLF 297


>gi|254505158|ref|ZP_05117309.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222441229|gb|EEE47908.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 297

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 136/286 (47%), Gaps = 25/286 (8%)

Query: 17  SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76
           S  F+ AA  +  S++ +S+ +S LE E+G++L  R  R +++TE G   ++  SE+  +
Sbjct: 3   SKGFSAAARDMGRSKALVSKYVSELEDELGVRLLNRTTRQVSMTEVGESYYKEASEILQR 62

Query: 77  LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136
           ++  Q  +Q S  +  G+LR++    +G  LL   + EFL  +PD+ + L L+++ +D+ 
Sbjct: 63  IDDLQASVQSSQQEIRGRLRVSAPRSMGDKLLNAAMMEFLAQHPDVVLDLRLEDRFVDLV 122

Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGD 196
            +  D A+R+ + ++ SSLI RK+        A+P  L     P    +L     I   +
Sbjct: 123 EEGFDIAVRVTQ-LEDSSLIARKIAPFRTVICASPELLAKVGVPNIPADLADRPCIIDTN 181

Query: 197 LIPKCMEDFNW---------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              K     NW         + TV  P+        +VNS  ++ +  + G G   +P +
Sbjct: 182 YRYKQ----NWAFGSQGERQMVTVKGPV--------EVNSAEAVCEAALQGLGFIRMPLF 229

Query: 248 IVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V +  N  R   ++ +   P   +Y  YP     T K++A  +F+
Sbjct: 230 FVSEYINEGRLKIVLAEHEEPMRGIYAVYPHRRHLTVKVRALVDFL 275


>gi|206575917|ref|YP_002237680.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206564975|gb|ACI06751.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 293

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 8/265 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R    V R+GS   AA  L++ Q++++R++  +E E+   LF R+  G  LTE 
Sbjct: 1   MNWDNIRYLLAVVRTGSL-RAAVSLNVDQATVARRLRHMEAELNTALFNRYPEGYRLTEY 59

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L     ++     T + +    +   +GK+ IA+T  LG   L   L      +PDI
Sbjct: 60  GERLLPDIEQMEATAATIERKSAGMNTSLAGKVYIASTDSLGSCFLLPALSALRQRHPDI 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L    + +DI    AD A+R  +P    +LI R+L T H   YA+  Y+     P+ 
Sbjct: 120 QVTLSTSPEIVDIRRGAADLAVRSARP-SDGNLIIRRLATFHTGLYASEEYVARRGLPVP 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H L+ F    P+      W      P+    I  L+V S    ++    G G+ 
Sbjct: 179 GSAFSGHGLVMF----PETSVPQYWQRLCGEPLTNGHI-VLEVTSQWLFIEALRQGLGVG 233

Query: 243 LLPDYIVKD-NPNLVRIMEDVITPS 266
           ++   IV+   P LV +M     P+
Sbjct: 234 MMAGEIVQRCCPELVNVMPTRSEPA 258


>gi|309781251|ref|ZP_07675988.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308920072|gb|EFP65732.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 298

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 148/304 (48%), Gaps = 21/304 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L+LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLDTTLLSRTTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  + ++     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGATFLAQARRILAAVDEAEEQIALRRQQPAGRLRVNAAMPFMLHVVAPLVPDFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  ++  ID+  +  D AIR+   ++ S+L  R L T  +   A+P YLK    P
Sbjct: 121 QIELELNTNDLIIDLLEEDTDVAIRI-GTLRDSTLRARLLGTRRLRVLASPAYLKTHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + +L KH L+ F  + P+ +  +       DR   EP    L+ +S  ++ Q  + G+
Sbjct: 180 RHVDDLQKHALLGF--VQPESLNQWPLRGPYGDRLRIEP---TLKASSGETLRQLALQGA 234

Query: 240 GIALLPDYIV---KDNPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291
           GI  L D+I    +   +LV+++ D    V+ P   VY+      +NT        F+ F
Sbjct: 235 GIVCLADFITVEDRRTGDLVQVLSDATVEVLQPIHAVYY------RNTQLASRIACFLDF 288

Query: 292 LKAR 295
           L+AR
Sbjct: 289 LEAR 292


>gi|213969611|ref|ZP_03397747.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301384839|ref|ZP_07233257.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059204|ref|ZP_07250745.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130843|ref|ZP_07256833.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213925707|gb|EEB59266.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 297

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPTEAGEQ 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +L+  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    AP Y +N   PL  Q+
Sbjct: 127 VCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFENHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W    D      R++     NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           +P  + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 244 VPISLARPHLESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAF 289


>gi|332087235|gb|EGI92368.1| HTH-type transcriptional activator aaeR [Shigella boydii 5216-82]
          Length = 309

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNPPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +        E         R I + R      N  ++++++   G+GIA +P
Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240


>gi|222083034|ref|YP_002542399.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221727713|gb|ACM30802.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 303

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 139/285 (48%), Gaps = 12/285 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++LR F  +A +   T AA +L +S+S +SR+++ LE  +G++L  R  RG  LTE 
Sbjct: 1   MDIEELRTFVEIADATGVTQAARRLGVSKSLVSRRLARLEQFLGVQLLARTTRGAFLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      +++  + E  + E    S    G+LR+A  +  G       L +    +P +
Sbjct: 61  GATFREHAAKICSEFEVAR-EATLPSGDLRGRLRVAAPLSFGPTHFAPILSQMARRHPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI     ++ +D+  +  DCAIRL   +Q S+LI R++ +I     A+P Y++    P++
Sbjct: 120 QILSSYTDRFVDLVGEGFDCAIRLGH-LQDSALIARRVGSIFGILVASPEYIEAHGAPVT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             E+  H ++   D   + M D + + TV RP G         +S +S++   + G GI 
Sbjct: 179 PDEIVNHQVVMRDDERWQFM-DGDKIVTV-RPQGR-----FVADSGISLVSATLDGIGIG 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            LP+ +V D   +  LV IM     P   ++   P     + K++
Sbjct: 232 YLPEPLVADHVRSGALVPIMTRHPIPPAGMFVVRPPGQHPSRKVR 276


>gi|152994122|ref|YP_001338957.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835046|gb|ABR69022.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 296

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 141/302 (46%), Gaps = 23/302 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F   A   S T AA+ L ++ +++SR+IS LE ++G +L +R  +GLTLT  G  
Sbjct: 3   DDLKIFITAANKNSLTAAAQHLDMTIATVSRRISALEQKLGCELLHRSTKGLTLTPVGES 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R  +E    L+     L ++     G L++   ++LG   L    ++F+ LYPDI++ 
Sbjct: 63  YYRECAEFIDALDQRISNLDQTLNSLKGDLKVLAPVNLGSGPLDAFWQDFVQLYPDIELN 122

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + L N   DI    AD A+R   +P  SSSLIQ+KL  I     A+P+       P +I+
Sbjct: 123 IELSNTLQDIRDTRADIALRSGNQP--SSSLIQKKLGHIEPILVASPNMAFPL--PKTIE 178

Query: 185 ELDKHNLIT---FGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +L     I    F D L+    ED   L    R I          N     +     G+G
Sbjct: 179 DLQHAPSIASNMFADWLLINNQEDRRPLNKEHRHIS---------NDMTITLNLAKAGAG 229

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP--EALKNTGKLKAFRNFIFLKAR 295
           IAL+P  +V    +   L+R++ +    +  ++  +P   +L    KL       FL  +
Sbjct: 230 IALIPMSMVHGALETGELIRVLPEWRGQNREIFLVWPYRRSLSARAKLLKEEMTKFLHQQ 289

Query: 296 DW 297
            W
Sbjct: 290 TW 291


>gi|299067415|emb|CBJ38614.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 309

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 125/277 (45%), Gaps = 16/277 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + L   +  +    VK SG LR+      G+  +   + +FL  +PD+ I L
Sbjct: 66  LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL+    P  +++L
Sbjct: 126 DLADRIVDLVNEGFDCAIRL-GDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             HN + FG           W+      TV   +G      ++      + ++C+ G G+
Sbjct: 185 AGHNCLAFG---ASANVQRGWVFQQGGKTVTVKVG----GTMECTDGAVLREWCLQGHGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           A    + V  +     LV +++    P   ++  +P+
Sbjct: 238 AWRSWWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQ 274


>gi|149919115|ref|ZP_01907599.1| putative LysR family transcriptional regulator [Plesiocystis
           pacifica SIR-1]
 gi|149820045|gb|EDM79466.1| putative LysR family transcriptional regulator [Plesiocystis
           pacifica SIR-1]
          Length = 304

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 129/275 (46%), Gaps = 11/275 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++ +F  VA +G+F      L L+ S+ S+ +  LE+ +G KL YR  R ++LT++G  
Sbjct: 8   NEILIFMAVADAGTFVGGGRALGLTGSAASKAVLRLESRLGAKLLYRTTRAVSLTDEGRA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   +E  +  +     +P G LR+      G+ +L   ++ +L  +P ++++
Sbjct: 68  FYKGGVRIVEAIEAAESSVGGDVGEPRGTLRLTVPDAFGRRVLMPLVRGYLERWPSVRVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D AIR+     S  LI R +    +   A+  YL     P ++ E
Sbjct: 128 ISFTDRPVDLVEEGFDLAIRIGGASASEGLISRVVARYEVFMCASQAYLDAEGTPRTLGE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATV---DRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L+ H  I F            W  T    +R    PR S + ++S  +I    + G GI 
Sbjct: 188 LEAHEGIVF----RSGTTSQAWTLTSADGERARHRPR-SRVALDSGEAIRDATLAGLGIG 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            LP+++V ++     LVR++ ++      +   YP
Sbjct: 243 YLPEFLVGEDLGAGRLVRLLPEIDAGVAQIVALYP 277


>gi|330957650|gb|EGH57910.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 297

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLMVAREQSFTKAATKLGVTPSALSHTLRALEERMGLRLLARTTRNVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQISAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q+
Sbjct: 127 VCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFEKHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W    D      R++     NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           +PD + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 244 VPDSLAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289


>gi|238894388|ref|YP_002919122.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546704|dbj|BAH63055.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 294

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 128/278 (46%), Gaps = 13/278 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+      +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI     D  +RL   + S  +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIIAQRFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L  H  I   FGD        + W   VD  +    P+      +SY+   +   LG 
Sbjct: 186 ADLVAHPCIAYQFGD-----GSLYAWELNVDGKKITHPPQGQWAFADSYME-AKAARLGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           G+A +P+ ++ D+     L+R+++         Y  YP
Sbjct: 240 GLAYVPEELITDDLAQGTLIRVLQRYSQRLEGSYLYYP 277


>gi|197295463|ref|YP_002154004.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195944942|emb|CAR57554.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 295

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 135/290 (46%), Gaps = 19/290 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             WD LR+   VA++GS   AA +L +S +++ R+++ +E E+G+KLF R   G   T  
Sbjct: 6   LSWDDLRLVLAVAQAGSLAGAARRLGISHATVFRRLAAIEAELGVKLFERTRAGYAPTPA 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   +  +    V+PSG +R+ TT  L   LL      F    P+I
Sbjct: 66  GEDAAAAAERIQDEVHGVERRVAGRDVRPSGTVRVTTTDTLLSGLLSPVFAAFRHACPEI 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + N   D+S   AD AIR   P  S    LI R++ TI    YAAP + +   + 
Sbjct: 126 TLEVSVSNAVFDLSKREADVAIR---PSSSPPEVLIGRRVGTIAQAVYAAPGWRERA-DD 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+    D+        +  + +E +      D   G       +V++ L +      G G
Sbjct: 182 LAWVGPDRR-------MGYRPLERWMHAHGADARCG------YRVDTLLGLFAAARAGIG 228

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            A+LP Y+  D  +LVR+   +   +  ++      L++T +++AF +F+
Sbjct: 229 AAVLPCYLADDERDLVRLGGRIDELATDLWLLTHPDLRDTARIRAFSSFV 278


>gi|163734345|ref|ZP_02141785.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
 gi|161392353|gb|EDQ16682.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
          Length = 304

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 136/286 (47%), Gaps = 10/286 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +SFDW+++R F   A  GSF+ AA  L  +Q +I RQI  LE  +G+ L  R  RGLTLT
Sbjct: 6   ISFDWNQVRAFLATAEEGSFSGAARVLKTTQPTIGRQIGALEEALGVTLVERSVRGLTLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   T  +        +     S + SG++ +  T  L   +L G LK       
Sbjct: 66  EAGRDLIDHTRTMGEAATLISMVADGKSQEVSGEVTVTGTDLLSAAILPGVLKPLRQTAS 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++++   ++  +++   AD AIR  +P Q   LI R L     + YAA  YL     P
Sbjct: 126 GIRVRIHASSEMQNLTQREADIAIRHVRPDQ-PDLIARHLGDFRANLYAATDYLDRAGRP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--G 238
            + +++   + +  G+  P+ +     L  +  P+   R     ++S   ++ + ++  G
Sbjct: 185 HTPRDVATLDFV--GNADPERL--MAPLHNMGVPV---RAESFVMSSESGVVAWELVKAG 237

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            G+++ P+ + +  P L +++ D  +  F ++      L+ + +++
Sbjct: 238 YGVSMQPETLGEAEPGLEKVLSDFPSLEFPIWLVTHRELQTSRRIR 283


>gi|126724944|ref|ZP_01740787.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126706108|gb|EBA05198.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 292

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 12/260 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD++R  Y VAR G+ + AAE + +  ++I R I  LE ++G KLF RHARG T TE G
Sbjct: 7   DWDQVRTAYHVARLGTVSAAAEVMGVHHATIIRHIDALELQLGTKLFQRHARGYTATEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L RV      +L      L+       G L I T+++     +   L  F   +PD++
Sbjct: 67  NDLLRVADATQDQLSQLAGRLKGQGEAIKGDL-IVTSLEFMSPYISPILARFQQKHPDVE 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+ + D +   +    A  AIR+ +       + + L    M  + A  Y++   +P   
Sbjct: 126 IRFLTDERLFRMEYGEAHLAIRVGQKPSDPDYVVQPLRQFSMGLFGAKSYIEKFGQPKGF 185

Query: 184 QELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +L  H  + F   G   P       WL  ++  + E      +V S +S       G G
Sbjct: 186 ADLKDHRFVGFEGGGSRAPTQ----TWL--IENALAEN--VTYKVTSTMSAFDAIQAGVG 237

Query: 241 IALLPDYIVKDNPNLVRIME 260
           +  +   I + + NLV+ +E
Sbjct: 238 LGFVSHDIGERDSNLVQCLE 257


>gi|37527791|ref|NP_931136.1| hypothetical protein plu3936 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787227|emb|CAE16308.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 297

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 7/248 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VARS SF+  A    ++ SSI+RQI  LE  +  KLF+R  RGL+LT+ G  
Sbjct: 8   DMLTTFIHVARSRSFSAVARLQGMAASSITRQIDNLEQVLETKLFFRSTRGLSLTDAGEI 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      + + L   Q EL   + +P G LR+A     G+  +   L E    YP I+I+
Sbjct: 68  LFARAQGIINDLVDIQAELAALNGEPQGVLRVACLPTFGRQHIIPMLAELFTRYPKIRIE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L    +  D   D  D  IR+ + ++ S+L  +++ T      A+P Y++    P ++ E
Sbjct: 128 LDQTERLTDPVRDRLDVVIRIGE-LKDSTLYSKRIATQTWIICASPGYIQRHGTPTTLTE 186

Query: 186 LDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           LD+H L+    D    C   +  +          RI   + + + ++    V G GIALL
Sbjct: 187 LDEHYLLDKHHDPAGICWSRYRSVINFS---DNNRI--FRSDDFETLRMATVSGFGIALL 241

Query: 245 PDYIVKDN 252
           P+++V  +
Sbjct: 242 PNWVVSTD 249


>gi|260551294|ref|ZP_05825495.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260405608|gb|EEW99099.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 293

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 140/310 (45%), Gaps = 34/310 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L+ F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLQFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60

Query: 61  EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            +G  L  RV      ++E   +++++      G++RI T    G   L   L EF + Y
Sbjct: 61  LEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 115

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I LI   K I +S   AD  + + +P     +I R L    +  Y +  YL     
Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKIYGSQSYLAQNPP 174

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228
              +++L +H  + +                +D  +  P + CL+            +S 
Sbjct: 175 IRGLEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 218

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           L+       G+G+A+LP ++  D P L  ++E  +  + T +      L++  ++K   +
Sbjct: 219 LAQQIAVSAGAGLAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 278

Query: 289 FIFLKARDWK 298
           ++  +A  ++
Sbjct: 279 YLRKQADKYQ 288


>gi|15833370|ref|NP_312143.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7
           str. Sakai]
 gi|16131133|ref|NP_417710.1| transcriptional regulator for aaeXAB operon [Escherichia coli str.
           K-12 substr. MG1655]
 gi|26249824|ref|NP_755864.1| putative DNA-binding transcriptional regulator [Escherichia coli
           CFT073]
 gi|82545527|ref|YP_409474.1| DNA-binding transcriptional regulator [Shigella boydii Sb227]
 gi|89110005|ref|AP_003785.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli str. K-12 substr. W3110]
 gi|91212663|ref|YP_542649.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UTI89]
 gi|110643478|ref|YP_671208.1| putative DNA-binding transcriptional regulator [Escherichia coli
           536]
 gi|117625527|ref|YP_858850.1| putative DNA-binding transcriptional regulator [Escherichia coli
           APEC O1]
 gi|157158690|ref|YP_001464716.1| putative DNA-binding transcriptional regulator [Escherichia coli
           E24377A]
 gi|157162721|ref|YP_001460039.1| putative DNA-binding transcriptional regulator [Escherichia coli
           HS]
 gi|170018513|ref|YP_001723467.1| putative DNA-binding transcriptional regulator [Escherichia coli
           ATCC 8739]
 gi|170082774|ref|YP_001732094.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170684070|ref|YP_001745515.1| putative DNA-binding transcriptional regulator [Escherichia coli
           SMS-3-5]
 gi|187776433|ref|ZP_02802645.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188025260|ref|ZP_02777166.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4113]
 gi|188496442|ref|ZP_03003712.1| HTH-type transcriptional activator aaeR [Escherichia coli 53638]
 gi|189010324|ref|ZP_02806394.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189401947|ref|ZP_02779232.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189403235|ref|ZP_02794106.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404349|ref|ZP_02788787.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189404739|ref|ZP_02811136.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC869]
 gi|189406044|ref|ZP_02825963.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC508]
 gi|191168186|ref|ZP_03029982.1| transcriptional activator AaeR [Escherichia coli B7A]
 gi|191173840|ref|ZP_03035361.1| transcriptional activator AaeR [Escherichia coli F11]
 gi|193065338|ref|ZP_03046409.1| transcriptional activator AaeR [Escherichia coli E22]
 gi|193070313|ref|ZP_03051256.1| transcriptional activator AaeR [Escherichia coli E110019]
 gi|194429124|ref|ZP_03061654.1| transcriptional activator AaeR [Escherichia coli B171]
 gi|194439171|ref|ZP_03071252.1| transcriptional activator AaeR [Escherichia coli 101-1]
 gi|208809727|ref|ZP_03252064.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814039|ref|ZP_03255368.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820676|ref|ZP_03260996.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400033|ref|YP_002272706.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920713|ref|YP_002294797.1| putative DNA-binding transcriptional regulator [Escherichia coli
           SE11]
 gi|215488551|ref|YP_002330982.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217327884|ref|ZP_03443967.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555807|ref|YP_002388720.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|218560305|ref|YP_002393218.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|218696942|ref|YP_002404609.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|218702008|ref|YP_002409637.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|218706857|ref|YP_002414376.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|227887958|ref|ZP_04005763.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|237706010|ref|ZP_04536491.1| transcriptional activator AaeR [Escherichia sp. 3_2_53FAA]
 gi|238902344|ref|YP_002928140.1| putative DNA-binding transcriptional regulator, efflux system
           [Escherichia coli BW2952]
 gi|253771927|ref|YP_003034758.1| DNA-binding transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038403|ref|ZP_04872461.1| transcriptional activator AaeR [Escherichia sp. 1_1_43]
 gi|254163180|ref|YP_003046288.1| putative DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|254795186|ref|YP_003080023.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|260846050|ref|YP_003223828.1| putative DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O103:H2 str. 12009]
 gi|260857363|ref|YP_003231254.1| putative DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O26:H11 str. 11368]
 gi|260869987|ref|YP_003236389.1| putative DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O111:H- str. 11128]
 gi|291284611|ref|YP_003501429.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406846|ref|ZP_06650772.1| DNA-binding transcriptional regulator [Escherichia coli FVEC1412]
 gi|293412611|ref|ZP_06655334.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293416667|ref|ZP_06659306.1| DNA-binding transcriptional regulator [Escherichia coli B185]
 gi|293449568|ref|ZP_06663989.1| DNA-binding transcriptional regulator [Escherichia coli B088]
 gi|298382587|ref|ZP_06992184.1| DNA-binding transcriptional regulator [Escherichia coli FVEC1302]
 gi|300817505|ref|ZP_07097721.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300824395|ref|ZP_07104509.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300898010|ref|ZP_07116383.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300904436|ref|ZP_07122282.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300917440|ref|ZP_07134104.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300926014|ref|ZP_07141837.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300929938|ref|ZP_07145378.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300937357|ref|ZP_07152193.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300958723|ref|ZP_07170842.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300979744|ref|ZP_07174694.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|300991028|ref|ZP_07179449.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|301022180|ref|ZP_07186097.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|301047913|ref|ZP_07194960.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|301304293|ref|ZP_07210407.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|301326322|ref|ZP_07219692.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|301645526|ref|ZP_07245460.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|307313058|ref|ZP_07592684.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|309793820|ref|ZP_07688246.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|312968426|ref|ZP_07782635.1| HTH-type transcriptional activator aaeR [Escherichia coli 2362-75]
 gi|312972487|ref|ZP_07786661.1| HTH-type transcriptional activator aaeR [Escherichia coli 1827-70]
 gi|331643942|ref|ZP_08345073.1| HTH-type transcriptional activator AaeR [Escherichia coli H736]
 gi|331649035|ref|ZP_08350123.1| HTH-type transcriptional activator AaeR [Escherichia coli M605]
 gi|331654841|ref|ZP_08355841.1| HTH-type transcriptional activator AaeR [Escherichia coli M718]
 gi|331664851|ref|ZP_08365756.1| HTH-type transcriptional activator AaeR [Escherichia coli TA143]
 gi|331670066|ref|ZP_08370911.1| HTH-type transcriptional activator AaeR [Escherichia coli TA271]
 gi|331674760|ref|ZP_08375519.1| HTH-type transcriptional activator AaeR [Escherichia coli TA280]
 gi|331679317|ref|ZP_08379989.1| HTH-type transcriptional activator AaeR [Escherichia coli H591]
 gi|331684884|ref|ZP_08385476.1| HTH-type transcriptional activator AaeR [Escherichia coli H299]
 gi|332279928|ref|ZP_08392341.1| transcriptional activator AaeR [Shigella sp. D9]
 gi|54040282|sp|P67663|AAER_ECOL6 RecName: Full=HTH-type transcriptional activator AaeR
 gi|54040283|sp|P67664|AAER_ECO57 RecName: Full=HTH-type transcriptional activator AaeR
 gi|54042784|sp|P67662|AAER_ECOLI RecName: Full=HTH-type transcriptional activator AaeR
 gi|26110252|gb|AAN82438.1|AE016767_198 Hypothetical transcriptional regulator yhcS [Escherichia coli
           CFT073]
 gi|606182|gb|AAA58045.1| ORF_o309 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789639|gb|AAC76275.1| transcriptional regulator for aaeXAB operon [Escherichia coli str.
           K-12 substr. MG1655]
 gi|13363589|dbj|BAB37539.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. Sakai]
 gi|81246938|gb|ABB67646.1| QseA [Shigella boydii Sb227]
 gi|85676036|dbj|BAE77286.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli str. K12 substr. W3110]
 gi|91074237|gb|ABE09118.1| putative transcriptional regulator LYSR-type [Escherichia coli
           UTI89]
 gi|110345070|gb|ABG71307.1| hypothetical transcriptional regulator YhcS [Escherichia coli 536]
 gi|115514651|gb|ABJ02726.1| putative DNA-binding transcriptional regulator, efflux system
           [Escherichia coli APEC O1]
 gi|157068401|gb|ABV07656.1| transcriptional activator AaeR [Escherichia coli HS]
 gi|157080720|gb|ABV20428.1| transcriptional activator AaeR [Escherichia coli E24377A]
 gi|169753441|gb|ACA76140.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|169890609|gb|ACB04316.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170521788|gb|ACB19966.1| transcriptional activator AaeR [Escherichia coli SMS-3-5]
 gi|187767173|gb|EDU31017.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013928|gb|EDU52050.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4113]
 gi|188491641|gb|EDU66744.1| HTH-type transcriptional activator aaeR [Escherichia coli 53638]
 gi|189000995|gb|EDU69981.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358741|gb|EDU77160.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361858|gb|EDU80277.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366142|gb|EDU84558.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373779|gb|EDU92195.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC869]
 gi|189376862|gb|EDU95278.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC508]
 gi|190901794|gb|EDV61547.1| transcriptional activator AaeR [Escherichia coli B7A]
 gi|190905890|gb|EDV65508.1| transcriptional activator AaeR [Escherichia coli F11]
 gi|192926979|gb|EDV81602.1| transcriptional activator AaeR [Escherichia coli E22]
 gi|192956372|gb|EDV86832.1| transcriptional activator AaeR [Escherichia coli E110019]
 gi|194412849|gb|EDX29141.1| transcriptional activator AaeR [Escherichia coli B171]
 gi|194421867|gb|EDX37873.1| transcriptional activator AaeR [Escherichia coli 101-1]
 gi|208729528|gb|EDZ79129.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735316|gb|EDZ84003.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740799|gb|EDZ88481.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161433|gb|ACI38866.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4115]
 gi|209757698|gb|ACI77161.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209757700|gb|ACI77162.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209757702|gb|ACI77163.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209757704|gb|ACI77164.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209757706|gb|ACI77165.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209913972|dbj|BAG79046.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|215266623|emb|CAS11062.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli O127:H6 str. E2348/69]
 gi|217320251|gb|EEC28676.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353674|emb|CAU99915.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli 55989]
 gi|218362575|emb|CAR00199.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli IAI1]
 gi|218367074|emb|CAR04845.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli S88]
 gi|218371994|emb|CAR19850.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli IAI39]
 gi|218433954|emb|CAR14871.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli UMN026]
 gi|226840027|gb|EEH72048.1| transcriptional activator AaeR [Escherichia sp. 1_1_43]
 gi|226899050|gb|EEH85309.1| transcriptional activator AaeR [Escherichia sp. 3_2_53FAA]
 gi|227835354|gb|EEJ45820.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|238862333|gb|ACR64331.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli BW2952]
 gi|242378780|emb|CAQ33571.1| quorum sensing transcriptional regulator of LYSR-type [Escherichia
           coli BL21(DE3)]
 gi|253322971|gb|ACT27573.1| putative DNA-binding transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975081|gb|ACT40752.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli B str. REL606]
 gi|253979237|gb|ACT44907.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli BL21(DE3)]
 gi|254594586|gb|ACT73947.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14359]
 gi|257756012|dbj|BAI27514.1| predicted DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O26:H11 str. 11368]
 gi|257761197|dbj|BAI32694.1| predicted DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O103:H2 str. 12009]
 gi|257766343|dbj|BAI37838.1| predicted DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O111:H- str. 11128]
 gi|260447729|gb|ACX38151.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|281180277|dbj|BAI56607.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|284923259|emb|CBG36353.1| LysR-family transcriptional regulator [Escherichia coli 042]
 gi|290764484|gb|ADD58445.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322658|gb|EFE62087.1| DNA-binding transcriptional regulator [Escherichia coli B088]
 gi|291426852|gb|EFE99884.1| DNA-binding transcriptional regulator [Escherichia coli FVEC1412]
 gi|291432023|gb|EFF05006.1| DNA-binding transcriptional regulator [Escherichia coli B185]
 gi|291469382|gb|EFF11873.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294490016|gb|ADE88772.1| transcriptional activator AaeR [Escherichia coli IHE3034]
 gi|298277727|gb|EFI19243.1| DNA-binding transcriptional regulator [Escherichia coli FVEC1302]
 gi|300300256|gb|EFJ56641.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300307962|gb|EFJ62482.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|300314633|gb|EFJ64417.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300358281|gb|EFJ74151.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300397647|gb|EFJ81185.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|300403598|gb|EFJ87136.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300406949|gb|EFJ90487.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|300415323|gb|EFJ98633.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300417958|gb|EFK01269.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300457576|gb|EFK21069.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300462161|gb|EFK25654.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300523124|gb|EFK44193.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300529803|gb|EFK50865.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300840419|gb|EFK68179.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|300846966|gb|EFK74726.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|301076210|gb|EFK91016.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|306906969|gb|EFN37477.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|307555329|gb|ADN48104.1| transcriptional regulator [Escherichia coli ABU 83972]
 gi|308122777|gb|EFO60039.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|309703664|emb|CBJ03005.1| LysR-family transcriptional regulator [Escherichia coli ETEC
           H10407]
 gi|310334864|gb|EFQ01069.1| HTH-type transcriptional activator aaeR [Escherichia coli 1827-70]
 gi|312286644|gb|EFR14555.1| HTH-type transcriptional activator aaeR [Escherichia coli 2362-75]
 gi|315062543|gb|ADT76870.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli W]
 gi|315137828|dbj|BAJ44987.1| putative DNA-binding transcriptional regulator [Escherichia coli
           DH1]
 gi|315257168|gb|EFU37136.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|315289017|gb|EFU48415.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|315294783|gb|EFU54126.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
 gi|315300894|gb|EFU60114.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
 gi|315617054|gb|EFU97664.1| HTH-type transcriptional activator aaeR [Escherichia coli 3431]
 gi|323154453|gb|EFZ40654.1| HTH-type transcriptional activator aaeR [Escherichia coli EPECa14]
 gi|323162930|gb|EFZ48765.1| HTH-type transcriptional activator aaeR [Escherichia coli E128010]
 gi|323173499|gb|EFZ59128.1| HTH-type transcriptional activator aaeR [Escherichia coli LT-68]
 gi|323178587|gb|EFZ64163.1| HTH-type transcriptional activator aaeR [Escherichia coli 1180]
 gi|323189144|gb|EFZ74428.1| HTH-type transcriptional activator aaeR [Escherichia coli RN587/1]
 gi|323376869|gb|ADX49137.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323936219|gb|EGB32512.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1520]
 gi|323941663|gb|EGB37842.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|323946909|gb|EGB42925.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|323951245|gb|EGB47120.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323957616|gb|EGB53330.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
 gi|323961108|gb|EGB56722.1| LysR substrate binding domain-containing protein [Escherichia coli
           H489]
 gi|323966422|gb|EGB61856.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|323970341|gb|EGB65611.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
 gi|323979046|gb|EGB74124.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
 gi|324009105|gb|EGB78324.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
 gi|324015838|gb|EGB85057.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
 gi|324018384|gb|EGB87603.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
 gi|324119602|gb|EGC13484.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
 gi|327251336|gb|EGE63025.1| HTH-type transcriptional activator aaeR [Escherichia coli STEC_7v]
 gi|331037413|gb|EGI09637.1| HTH-type transcriptional activator AaeR [Escherichia coli H736]
 gi|331042782|gb|EGI14924.1| HTH-type transcriptional activator AaeR [Escherichia coli M605]
 gi|331048223|gb|EGI20300.1| HTH-type transcriptional activator AaeR [Escherichia coli M718]
 gi|331058099|gb|EGI30081.1| HTH-type transcriptional activator AaeR [Escherichia coli TA143]
 gi|331062979|gb|EGI34893.1| HTH-type transcriptional activator AaeR [Escherichia coli TA271]
 gi|331068199|gb|EGI39595.1| HTH-type transcriptional activator AaeR [Escherichia coli TA280]
 gi|331073382|gb|EGI44705.1| HTH-type transcriptional activator AaeR [Escherichia coli H591]
 gi|331078499|gb|EGI49705.1| HTH-type transcriptional activator AaeR [Escherichia coli H299]
 gi|332090977|gb|EGI96068.1| HTH-type transcriptional activator aaeR [Shigella boydii 3594-74]
 gi|332102280|gb|EGJ05626.1| transcriptional activator AaeR [Shigella sp. D9]
          Length = 309

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +        E         R I + R      N  ++++++   G+GIA +P
Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240


>gi|15676212|ref|NP_273344.1| putative transcriptional regulator [Neisseria meningitidis MC58]
 gi|7225514|gb|AAF40741.1| putative transcriptional regulator [Neisseria meningitidis MC58]
 gi|316985229|gb|EFV64181.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Neisseria meningitidis H44/76]
 gi|325135094|gb|EGC57722.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M13399]
 gi|325141126|gb|EGC63629.1| transcriptional regulator, LysR family [Neisseria meningitidis
           CU385]
 gi|325199493|gb|ADY94948.1| transcriptional regulator, LysR family [Neisseria meningitidis
           H44/76]
          Length = 303

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 1/179 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184


>gi|91210623|ref|YP_540609.1| transcriptional regulator YcjZ [Escherichia coli UTI89]
 gi|110641564|ref|YP_669294.1| LysR family transcriptional regulator [Escherichia coli 536]
 gi|117623582|ref|YP_852495.1| transcriptional regulator YcjZ [Escherichia coli APEC O1]
 gi|191171072|ref|ZP_03032623.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|218558316|ref|YP_002391229.1| nucleic acid-binding regulator [Escherichia coli S88]
 gi|237705359|ref|ZP_04535840.1| transcriptional regulator YcjZ [Escherichia sp. 3_2_53FAA]
 gi|300972020|ref|ZP_07171780.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|306813646|ref|ZP_07447827.1| LysR family transcriptional regulator [Escherichia coli NC101]
 gi|91072197|gb|ABE07078.1| hypothetical transcriptional regulator YcjZ [Escherichia coli
           UTI89]
 gi|110343156|gb|ABG69393.1| hypothetical transcriptional regulator YcjZ (LysR family)
           [Escherichia coli 536]
 gi|115512706|gb|ABJ00781.1| hypothetical transcriptional regulator YcjZ [Escherichia coli APEC
           O1]
 gi|190908804|gb|EDV68392.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|218365085|emb|CAR02791.1| putative nucleic acid-binding regulator [Escherichia coli S88]
 gi|226900116|gb|EEH86375.1| transcriptional regulator YcjZ [Escherichia sp. 3_2_53FAA]
 gi|294492702|gb|ADE91458.1| transcriptional regulator, LysR family [Escherichia coli IHE3034]
 gi|300309242|gb|EFJ63762.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|305852920|gb|EFM53365.1| LysR family transcriptional regulator [Escherichia coli NC101]
 gi|307627097|gb|ADN71401.1| LysR family transcriptional regulator [Escherichia coli UM146]
 gi|315289172|gb|EFU48570.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|323949068|gb|EGB44960.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323956890|gb|EGB52622.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
 gi|324011333|gb|EGB80552.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
          Length = 299

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 128/287 (44%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D + +      L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKGKKLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|91223248|ref|ZP_01258514.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|254228760|ref|ZP_04922183.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262396520|ref|YP_003288373.1| transcriptional regulator LysR family [Vibrio sp. Ex25]
 gi|269965374|ref|ZP_06179494.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91192061|gb|EAS78324.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|151938707|gb|EDN57542.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262340114|gb|ACY53908.1| transcriptional regulator LysR family [Vibrio sp. Ex25]
 gi|269830020|gb|EEZ84249.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 299

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 128/288 (44%), Gaps = 18/288 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  +L+ S +S++++ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVIELGSFSKVAEANNLTNSVVSKRMARLEEEIGAQLLYRTTRKLTLTEAGKV 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPCISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+  D  D  IR    +  SSLI R ++       A+P Y+    +P+   +
Sbjct: 124 MSLDNRFVDLVADGYDLVIRTGY-LADSSLIARHILDSQWVVCASPSYIAKNGKPIEPID 182

Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  HN + +              ED N++  V          C   ++  ++ +  + G 
Sbjct: 183 LTTHNCLQYAYQTTGATDWEFKGEDGNYIVKVS--------GCFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           GIA +P  +V     N  LV I  +++     +Y  YP   +   K+K
Sbjct: 235 GIAYVPRCLVYHDIRNGQLVDIFPELVGKKLGIYAVYPFTRQPPNKVK 282


>gi|319764746|ref|YP_004128683.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330826962|ref|YP_004390265.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317119307|gb|ADV01796.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329312334|gb|AEB86749.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 310

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 126/282 (44%), Gaps = 16/282 (5%)

Query: 6   DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+ F     VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R +TLT +
Sbjct: 2   DKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLLVRTTRRITLTHE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS        +   +   +  +    VK +G LR+      G+  +   +  F  L+PD+
Sbjct: 62  GSAFLDDCQRLLADVANAEASVSAGGVKATGHLRVTAPAGFGRRHVAPLVPRFRDLHPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P+ 
Sbjct: 122 TISLNLSDRVVDMAGEGYDCAVRVGD-LPDSSLVSVRMADNRRLCVATPQYLQRRGTPMH 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCV 236
             EL +H+ +T   L     +   W   V    G   +   +    L       +  +C+
Sbjct: 181 PAELAQHDCLT---LSSDASQTRGWAFRVPVAGGGTEVVHFKPGGPLDCSDGQVLHDWCL 237

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            G GIA    + V+    +  LV ++E+   P   +Y  +P+
Sbjct: 238 GGWGIAWRSTWEVESEIASGRLVAVLEEFAAPPNGIYVVFPQ 279


>gi|261342694|ref|ZP_05970552.1| HTH-type transcriptional activator AaeR [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315346|gb|EFC54284.1| HTH-type transcriptional activator AaeR [Enterobacter cancerogenus
           ATCC 35316]
          Length = 302

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 8/240 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVELGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L     + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAAMTADMLKEYPGLTVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L ++ M   A+  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVVCASKSYLAQYGVPEKPADLT 179

Query: 188 KHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H+ + +        E      L+T   P+G         N  ++I ++ V G+GIA +P
Sbjct: 180 NHSWLEYSVRPDNEFELIAPEGLSTKLLPVGR-----FVTNDPMTISRWLVAGAGIAYVP 234


>gi|167033681|ref|YP_001668912.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860169|gb|ABY98576.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 303

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 15/295 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A++GSFT AA  L L++S++ + I+ LE  + ++L  R  R L+LT++G      
Sbjct: 11  AFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGLVAFER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   L+  +  + +   KP+G LR+   + LGQ  +   L ++L  +P+++  +   
Sbjct: 71  WRQILDDLDEVESTMAQRRGKPTGTLRLTAPLSLGQRHVLPILDQYLKQWPELRADIRFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R+  P + S L+ R +        A+P YL+    P    +L  H
Sbjct: 131 DRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPAYLEKRGVPQVPGDLYGH 190

Query: 190 NLITF--GD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + I F  G+  +P        L   + P        L ++S  +++     G G+  LP 
Sbjct: 191 DKIAFLAGEKAMPWRFHTEAGLHLCEDP------GRLNIDSSEAMLDGARAGFGLIHLPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           YI  D+     LV ++     P+  +   YP     + ++   R FI L    W+
Sbjct: 245 YITGDDLRAGTLVEVLHGYRPPADPIRIVYPSKRHLSPRV---RGFIDLLVASWE 296


>gi|213969571|ref|ZP_03397707.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301383346|ref|ZP_07231764.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059382|ref|ZP_07250923.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134511|ref|ZP_07260501.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213925667|gb|EEB59226.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 302

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 140/285 (49%), Gaps = 9/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +GSFT AAE+L L+ S++S+ +S LE+ +G++LF R  R L LTE+G   H
Sbjct: 10  IETFVAVASAGSFTAAAERLSLTNSAVSKSVSRLESRLGMRLFERTTRSLALTEEGVAYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V + +  +LE  +  L     +P+G+LRI      G+  +   + +F   +  ++ ++ 
Sbjct: 70  AVCTRMLAELEAAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILDFAGQHHKLRPRVT 129

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +DI  +  D A+R+  P I  + +  R L T  +   AAP YL+    P + ++L
Sbjct: 130 FTDRFVDIIEEGIDLAVRIGGPLIWPAGVAHRYLGTERVIFCAAPAYLQRHGTPTTFEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I FG           WL   ++   E R   + L + +  + +       GIA L
Sbjct: 190 ARHACILFGR---GDGSTSPWLFVDEQGQQEARAIEARLVIGNGEAQVAAVTSAWGIAQL 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +++KD      LV I+  + T    ++  +P   ++  K++A 
Sbjct: 247 ATWLIKDQLQRGELVEILPQLATEGLALHLAWPRNRESLPKVQAL 291


>gi|169797348|ref|YP_001715141.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213155837|ref|YP_002317882.1| transcriptional regulator, HTH-type [Acinetobacter baumannii
           AB0057]
 gi|215484788|ref|YP_002327023.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB307-0294]
 gi|301346549|ref|ZP_07227290.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB056]
 gi|301512876|ref|ZP_07238113.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB058]
 gi|301596054|ref|ZP_07241062.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB059]
 gi|332851895|ref|ZP_08433798.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332867954|ref|ZP_08437942.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169150275|emb|CAM88172.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|193076230|gb|ABO10858.2| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii ATCC 17978]
 gi|213054997|gb|ACJ39899.1| transcriptional regulator, HTH-type [Acinetobacter baumannii
           AB0057]
 gi|213988884|gb|ACJ59183.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB307-0294]
 gi|332729680|gb|EGJ61016.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332733655|gb|EGJ64814.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 298

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L+ FY+   VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+ 
Sbjct: 2   DRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPDI
Sbjct: 62  GQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL   +   D+     DC +R+ + + +SSLI R +  + M   A+  YL++   P  
Sbjct: 122 HLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASTQYLQDYGIPEQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + +L++H LI +   + +   +F +        G   + S L VN+  + +     G GI
Sbjct: 181 LNDLEQHKLINYAGAVGEKQGEFIYQG------GTVMMDSALSVNNTEAYIAAACAGLGI 234

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y V+D      LV ++     PS  +   YP       +L+ F N++
Sbjct: 235 IQLPYYDVQDKIEQGILVEVLSAYSAPSLPLNILYPNRSYIPKRLEVFMNWV 286


>gi|241762436|ref|ZP_04760514.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373030|gb|EER62688.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 304

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 129/285 (45%), Gaps = 6/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F +VA+  SFT AA +L +SQS++S  +  LE  + + L  R  R +T T  G  
Sbjct: 9   NDLQSFLIVAQEKSFTKAAAKLGVSQSALSHTVRQLEARLNLTLLIRTTRSVTPTSAGEY 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +  +  + ++E     + E   +P+G +RI +T D    +++  +K FL  YP ++I+
Sbjct: 69  LIQNMAPHFDQIEKQLASIGELRNQPTGTIRITSTDDALAYVIRPKIKGFLQKYPGVKIE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ D K +DI  +  D AIRL + +            I      +P Y +N   P + Q+
Sbjct: 129 LVSDLKLVDIFTEKFDAAIRLGENVTKEMASVPLTPDIRFTVVGSPEYFQNKPIPETPQD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  IT    +P     + W      R I       L  NS   I   C+ G G+A +
Sbjct: 189 LLNHQCITI--RLPTHGGIYAWEFEKAGRDIKIRVDGPLVFNSIFPIRNACLDGLGLAHM 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P+ + +   +   L+ ++ D        + C+P   +N      F
Sbjct: 247 PEIMAQKYIEEGRLIPVLGDWCPYWSGYHLCFPHHYENIRPFSLF 291


>gi|28868784|ref|NP_791403.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852023|gb|AAO55098.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 297

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPTEAGEQ 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +L+  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    AP Y +N   PL  Q+
Sbjct: 127 VCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFENHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W    D      R++     NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           +P  + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 244 VPISLARPHLESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAF 289


>gi|148547762|ref|YP_001267864.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511820|gb|ABQ78680.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 303

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 15/295 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A++GSFT AA  L L++S++ + I+ LE  + ++L  R  R L+LT++G      
Sbjct: 11  AFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGLVAFER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   L+  +  +     KP+G LR+   + LGQ  +   L ++L  +P+++  +   
Sbjct: 71  WRQILDDLDEVESTMALRRGKPTGTLRLTAPLSLGQRHVLPILDQYLKQWPELRADIRFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R+  P + S L+ R +        A+P YL+    P    +L  H
Sbjct: 131 DRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPAYLEKRGVPQMPGDLYGH 190

Query: 190 NLITF--GD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + I F  G+  +P        L   + P        L ++S  +++     G G+  LP 
Sbjct: 191 DKIAFLAGEKAMPWRFHTEAGLHLCEDP------GRLNIDSSEAMLDGARAGFGLIHLPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           YI  D+    NLV ++     P+  +   YP     + ++   R FI L    W+
Sbjct: 245 YITGDDLRAGNLVEVLHAYRPPADPIRIVYPSKRHLSPRV---RGFIDLLVASWE 296


>gi|300311868|ref|YP_003775960.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074653|gb|ADJ64052.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 307

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 133/291 (45%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F  VA   SF+ AA QL L  +S+S  I  LE  +G +L  R  R + LT  G  
Sbjct: 5   DTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTADGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R + E+  + E+ +    + +   SG+LR+  +  + + ++   L  FL  +P ++I+
Sbjct: 65  FYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPSFLDKHPQLEIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC +R    +  SSL+ R +  +     A+P YL+    P ++++
Sbjct: 125 LSASDRRVDLVAEGFDCVLRT-GTLDDSSLVARPIGHLVQINCASPEYLRRYGTPQTLED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H L+ +  ++      + W      R +  P    + VNS  +    C+ G G+  L
Sbjct: 184 LAQHRLVHYRQVLGGRSPGWEWFDGQQTRSL--PMAGSITVNSTETYYAACLAGLGLIQL 241

Query: 245 PDYIVK-----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P    +     D  ++V ++         V   Y        +L  F +++
Sbjct: 242 PLVGAQKRQMLDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMDWL 292


>gi|260427232|ref|ZP_05781211.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260421724|gb|EEX14975.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 298

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 117/261 (44%), Gaps = 18/261 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F   A +GSFT AAE+L +S    S+ ++ LE  +G++L  R  R + +T  G  
Sbjct: 5   DGLRAFVATAETGSFTGAAERLGISNRLTSKYVAELERRLGVRLLQRTTRKVGVTASGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  +L+    E+ E     +G LR++  +  G+  ++  L  F   +P++ I 
Sbjct: 65  LLARAPALLDELDEMLAEVTEDGRGFTGTLRVSAPVTFGEKYVKDLLSRFAAPHPELTID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D++ D  D   R+ +P   SSL +RKL  I     A+P YL     P + ++
Sbjct: 125 LRLSDAYVDLAADGIDLGFRIGEPAL-SSLKRRKLGAIRSRLVASPDYLARHLAPATPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFN------WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           L  H           C+ D N      W    D      R+     VNS        V G
Sbjct: 184 LASH----------VCIVDTNRADPARWRFLRDGETTTVRVPTRFMVNSAQVARDLAVAG 233

Query: 239 SGIALLPDYIVKDNPNLVRIM 259
            G+A  P +++ D+    R++
Sbjct: 234 DGVAYCPVFVLGDDIKAGRLV 254


>gi|254671545|emb|CBA09168.1| Transcriptional regulator [Neisseria meningitidis alpha153]
 gi|325128962|gb|EGC51814.1| transcriptional regulator, LysR family [Neisseria meningitidis
           N1568]
 gi|325131016|gb|EGC53743.1| transcriptional regulator, LysR family [Neisseria meningitidis
           OX99.30304]
 gi|325207318|gb|ADZ02770.1| transcriptional regulator, LysR family [Neisseria meningitidis
           NZ-05/33]
          Length = 303

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 1/179 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184


>gi|254252581|ref|ZP_04945899.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124895190|gb|EAY69070.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 325

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 18  NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 77

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD+ ++L
Sbjct: 78  LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAVARYRERYPDVHVEL 137

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+     PL   +L
Sbjct: 138 TLAQRMPDLLDEGYDVAIVVGRELPDSGLVSQRLGESYSVLCASPGYVDAHGMPLRSADL 197

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
            +H  +  G + P    D  W  T+  P G+  +       +VN   ++      G GI 
Sbjct: 198 AQH--VCLGMVAPGFHYD-EW--TLSGPNGDETVPIAAPPFRVNVAEALAVAVREGMGIG 252

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP Y       +  +VR+M +  +    +Y  YP       K++ + +F+
Sbjct: 253 GLPLYSAIGGLRSGQIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 303


>gi|114327474|ref|YP_744631.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315648|gb|ABI61708.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 316

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 136/295 (46%), Gaps = 20/295 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  V   GSF+ AA    +  S+ISR I+ LE  +G+ LF+R  R + LTE G   +
Sbjct: 7   MQMFVRVVEFGSFSRAAGVTGVHISAISRGIASLEENLGVDLFHRSTRRVHLTEPGRIFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V  ++E  +         P G LR+A      +  +  ++ EFL  YPDI++ + 
Sbjct: 67  QHARSVLREVEEARAAASAQQGHPQGLLRLALPDAFARLHIVPHMPEFLATYPDIRLDMS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+    AD AIR+  P+  SSLI RKL        A+P YL +       ++L 
Sbjct: 127 FSDVRVDLIATGADAAIRI-GPLLDSSLIARKLAPHRRVICASPDYLDHRPAIRHPEDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI-GE----PRISCLQVNSYLSIMQYCVLGSGIA 242
           +HN + +           NW      PI GE    P    ++ +    +    + G GI 
Sbjct: 186 QHNCLIY-----SLQPSGNWF--FHHPISGEEVAVPVRGSIRADDSEPLRGCALSGLGIV 238

Query: 243 LLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP ++V ++     L  ++ D    + T    ++  YP   +   K++AF +F+
Sbjct: 239 LLPTWLVGNDLRSGRLSPVLPDWNAMIATQPSGIFGLYPPHRQVPPKIRAFLDFL 293


>gi|288933957|ref|YP_003438016.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288888686|gb|ADC57004.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 305

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 130/282 (46%), Gaps = 11/282 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  SG+F  AA  LH+++S++ + I+ LE  +G+ LF R  R   LT
Sbjct: 1   MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G + +    E   ++   +  LQ    +  G+LRI+  +  GQ  +   L      YP
Sbjct: 61  EEGEQFYHQCREALARIREAEEALQRGKGEVQGRLRISLPVLFGQRCVAPLLFRLSQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +++  +  D A+R+     + SL  R L    M   AA  YL+    P
Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGNLADTGSLRARALGEHGMVLCAAADYLRRQPAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237
            +I  L +H   T G L    ++ +      D   GE R S    L  + + +I      
Sbjct: 181 QTIAGLSEHR--TLGYLHNGQLQKWQ---LYDPQQGEVRFSPQTGLVQDDFAAIAAAVQQ 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           G GIA LPD++V     +  L +++       F ++  +PE 
Sbjct: 236 GMGIAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEG 277


>gi|255262026|ref|ZP_05341368.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
 gi|255104361|gb|EET47035.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
          Length = 298

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 133/297 (44%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW+  R F   A  GS + AA  L  +Q +I RQ++ LE  +G+ LF R  RG+ LT
Sbjct: 6   IDFDWNHARAFLATAEEGSLSAAARALKTTQPTIGRQVTALEEHLGLVLFERVGRGVELT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L    + +        +     S    G +RI  +  +    L   L++   + P
Sbjct: 66  PSGRQLATHIAAMRDAATAASLAASGQSQTIDGTVRITASDVMAAYHLPAFLEQLATVAP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I++I  +   D+    AD A+R  +P Q   LI R +     H YA+  YL    +P
Sbjct: 126 RLNIEIIASDDLQDLQRREADIALRHVRPDQ-PELIARLVCDASAHFYASQPYLDKHGDP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
                +    +I F D +P+ ++  N +    RP         Q  S L + Q    G G
Sbjct: 185 DDASGITTQKIIGFSD-VPRMVDYLNMIGVSLRPDQFHN----QSTSGLVVWQMAQRGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           + ++ D + +  PN+ R +++V + ++ ++      L  + +++   + +  FLK R
Sbjct: 240 LCIMGDDVAQQTPNMRRTLKNV-SVTYPIWLTTHRELHTSRRIRLVFDMLDQFLKPR 295


>gi|254464566|ref|ZP_05077977.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206685474|gb|EDZ45956.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 292

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 129/286 (45%), Gaps = 16/286 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ +R F   A +GS + AA +L L+Q ++SRQ++ LE E+G+ LF R  R L LTE G
Sbjct: 5   DWNHIRAFLATAETGSLSAAARRLGLTQPTLSRQVAALEAELGVLLFERPGRALALTEAG 64

Query: 64  SKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +L    R   E  + L T     Q  S++  G +RI  +  +  ++L   L +     P
Sbjct: 65  HELLIHSRKMGEAANSL-TLAATGQAQSIE--GTVRITASDVMSAHVLPPVLHQLRQRAP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I ++  N   D+    AD AIR  +P Q   LI R +     H YAAP YL+    P
Sbjct: 122 RLTIDVVAANDIRDLMRREADIAIRHVRPEQ-PELIARLVQEATAHFYAAPSYLERRGRP 180

Query: 181 LSIQELDKHNLITFGDLIPKC--MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +   L  H+ + F D+      M       T D          ++  S L+  +    G
Sbjct: 181 SAPAGLADHDFVGFADVDRSIAFMAPLGIHLTADN-------FRIRSTSGLASWELVKQG 233

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            G+  + D +    P + R++  +   +F V+      L  + +++
Sbjct: 234 FGVCPMMDDVAAVTPGVERLLPGMEPLTFPVWLTTHRELHTSRRIR 279


>gi|167835170|ref|ZP_02462053.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 320

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 16/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   +  +   Y D+ +++
Sbjct: 66  YERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAQRYADVTVEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +
Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPTGMKSSSLVARQIATAHIVLVASPDYLAKHGTPATIAD 185

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241
           L  H+ I       LI   + D    + V      P    + VN +L  ++  VL G+GI
Sbjct: 186 LQHHSFIRREPNETLIDAAISDVAAASRV------PLSGNVIVN-HLEGLRVAVLSGAGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           ALL   +V ++     LV ++ D + P    +Y  Y      + K+++F +F+
Sbjct: 239 ALLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFL 291


>gi|15803777|ref|NP_289811.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 EDL933]
 gi|25319769|pir||G85988 probable transcription regulator LYSR-type yhcS [imported] -
           Escherichia coli (strain O157:H7, substrain EDL933)
 gi|12517867|gb|AAG58371.1|AE005552_1 quorum sensing Escherichia coli regulator A [Escherichia coli
           O157:H7 str. EDL933]
          Length = 309

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 4/239 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVXEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +        E         R I + R      N  ++++++   G+GIA +P
Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240


>gi|331017360|gb|EGH97416.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 302

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 140/285 (49%), Gaps = 9/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +GSFT AAE+L L+ S++S+ +S LE+ +G++LF R  R L LTE+G   H
Sbjct: 10  IETFVAVASAGSFTAAAERLSLTNSAVSKSVSRLESRLGMRLFERTTRSLALTEEGVAYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V + +  +LE  +  L     +P+G+LRI      G+  +   + +F   +  ++ ++ 
Sbjct: 70  AVCTRMLAELEAAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILDFAGQHHKLRPRVT 129

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +DI  +  D A+R+  P I  + +  R L T  +   AAP YL+    P + ++L
Sbjct: 130 FTDRFVDILEEGIDLAVRIGGPLIWPAGVAHRYLGTERVIFCAAPAYLQRHGTPTTFEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I FG           WL   ++   E R   + L + +  + +       GIA L
Sbjct: 190 ARHACILFGR---GDGSTSPWLFVDEQGQQEARAIEARLVIGNGEAQVAAVTSAWGIAQL 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +++KD      LV I+  + T    ++  +P   ++  K++A 
Sbjct: 247 ATWLIKDQLQRGELVEILPQLATEGLALHLAWPRNRESLPKVQAL 291


>gi|222102786|ref|YP_002539825.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221739387|gb|ACM40120.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 296

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 131/279 (46%), Gaps = 20/279 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V  + SFT A   + LS+ +IS+ I  LE  VG+ L  R  RG+  +E GS+ +
Sbjct: 7   LKVFCAVIEARSFTKAGNNIGLSRPAISKNIRELEAHVGVTLVNRTTRGVMPSEAGSRYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           ++ SE+  + E       +S  +  G LR+   + LG +L+   L +F    P+  + L 
Sbjct: 67  QIVSELLWRHEQADEVASQSGAELRGTLRVTMPVTLGLHLILPVLPQFNEENPECSLDLC 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +   +     D A+R  + ++ S+L+ R + ++     AAP Y++  +   S ++L+
Sbjct: 127 LSEEKQQLVEGNFDVAVRASQRLEDSTLMSRCIGSVTYAICAAPSYVQKSQSLKSPKDLE 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-------QVNSYLSIMQYCVLGSG 240
            H L+  G  I     D  W  +     GE   SC        + N   +I    V G G
Sbjct: 187 DHQLVVHGANIG----DQKWRFSAQ---GE---SCYVSVRAQHKSNCSEAIKSLTVAGMG 236

Query: 241 IALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEA 276
           IA +P  Y+ ++     LV ++ D      T+Y  YP++
Sbjct: 237 IARIPRPYVSRELAEGRLVELLSDWTMEPLTIYAMYPQS 275


>gi|300691651|ref|YP_003752646.1| transcriptional regulator, lysR family [Ralstonia solanacearum
           PSI07]
 gi|299078711|emb|CBJ51370.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 309

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 130/288 (45%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + L   +  +    VK SG LR+      G+  +   + +FL  +PD+ I L
Sbjct: 66  LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL   +  SSL+  +L        AAP YL+    P  ++ L
Sbjct: 126 DLGDRIVDLVNEGFDCAVRL-GDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEHL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             HN + FG           W+   D      ++   ++      + ++C+ G G+A   
Sbjct: 185 ASHNCLAFG---ASANVQRGWVFQQDGKTVTVKVGGTMECTDGAVLREWCLQGYGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289


>gi|241764124|ref|ZP_04762160.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241366530|gb|EER61023.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 300

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 136/284 (47%), Gaps = 24/284 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  SFT AA QL +SQS++S  I  LE  +G++L  R  R ++ T  G
Sbjct: 5   NYNDLLAFMAVAREKSFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVSPTVAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     + E S KP+G +RI TT    + +L   L + L  YP I+
Sbjct: 65  ERLMQNVAPRFQEIEAELTAIGELSDKPAGTVRITTTEHAARTVLWPKLAKLLPEYPGIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I++++  +I  +  D  +RL   +   +   R    + +   A+P YL     P + 
Sbjct: 125 VEMIVESRLAEIVTERYDMGVRLGDTLTGDTTAVRISADMPVAIVASPAYLAQYPAPKTP 184

Query: 184 QELDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQ 233
           Q+L  H+     L++ G L       + W    +   G+ R++      L  N  + I+ 
Sbjct: 185 QDLIHHSCINLRLMSRGGL-------YAW----ELKKGKQRVNAHVEGQLVFNEPMQILD 233

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVI--TPSFTVY-FCYP 274
             + G G+  + + + +      R+ + ++   P+F  Y  CYP
Sbjct: 234 AALAGFGLGYVLEDMARPYVTQGRLRQVLMDWCPAFPGYHICYP 277


>gi|156310355|ref|XP_001617728.1| hypothetical protein NEMVEDRAFT_v1g156874 [Nematostella vectensis]
 gi|156195522|gb|EDO25628.1| predicted protein [Nematostella vectensis]
          Length = 305

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 2/192 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA +GSF+  A +L ++ SS+SR I  LE ++ + LF R  R + LTE+G  
Sbjct: 3   DAMRVFVHVADTGSFSKTAARLQIAPSSVSRTIDQLEKQLQVTLFKRSTRQVVLTEKGQL 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R    +  +       +Q+     SG+LRI+     G+ ++   +  FL  YPD+ + 
Sbjct: 63  FLRGALPLLEEANALVASVQDRERVVSGELRISVFESFGRLVVSPLIATFLRKYPDVTVT 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LDN   D++ D  D AIR+  P+  S L  R+L+       A+P YL     P   +E
Sbjct: 123 LELDNGLTDLTGDNVDLAIRIGLPM-DSGLRYRRLLPNRTRICASPQYLAAQGTPTVPEE 181

Query: 186 LDKHN-LITFGD 196
           L +HN L+  GD
Sbjct: 182 LVQHNCLLLRGD 193


>gi|310819493|ref|YP_003951851.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392565|gb|ADO70024.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 301

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 12/299 (4%)

Query: 1   MSFDW---DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD      + V   V  +G+F  AAE L L+QS +SR ++ LE  VG++LF R AR +
Sbjct: 1   MAFDGKLLSGMGVMAAVVEAGNFVRAAEALGLTQSGVSRAVARLEQRVGVRLFDRTARAV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT++G + +   +     +E        ++    G LR+      G  +L   L EFL 
Sbjct: 61  SLTDEGRRFYEEVAPHLAGIEDAATAATGAAATVRGHLRVNADAAFGHYVLAPRLGEFLA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           L+P++  +L++ ++  D+  +  D A+R  +P + SSLI R++    +   A+P Y+   
Sbjct: 121 LHPELSFELVVRDRIGDLVAEGLDMAVRFGEP-EPSSLICRQIGRSQVLTCASPEYVARR 179

Query: 178 REPLSIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQY 234
             P    EL +  H  I   +        F+W     R + +  +   L VN   S++  
Sbjct: 180 GRPKHPSELARGAHECILVRNTW--TGRHFDWEFHQGREVVQVDVQGRLMVNDSGSLISA 237

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G G+    ++ V+   D+  LV+++       + V+  +        K++AF +F+
Sbjct: 238 MLSGHGVGQPFEFSVRELIDSGRLVKLLPAWSDERYPVHVYHRSREFPAAKVRAFIDFL 296


>gi|145300477|ref|YP_001143318.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853249|gb|ABO91570.1| transcriptional regulator LysR family [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 289

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 130/283 (45%), Gaps = 7/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR G+   AA  L + Q+++ R+I+ LE  +G KLF R  +   L+  
Sbjct: 2   INWDDARFFLALARQGTLRGAAGVLGVDQATVGRRITALEQSLGSKLFIRTPKLYDLSPL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +    S +   ++  + +         G++RIATT  L Q  +   L      +P I
Sbjct: 62  GETMLADASAMEQAIQAIERKASAGDQSLCGEVRIATTDTLAQAFVLPALTLLRERHPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L       DI+   AD AIR  +P  +  L+ ++L TI M  YA+  YL     P  
Sbjct: 122 RLSLQTAVNVSDIACLEADLAIRGMRP-DNDELVIKRLTTIEMGLYASHDYLARHGTPKC 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +H L+ F     K +   +W +    P+ EP +  LQ N+ L ++     G GIA
Sbjct: 181 GLGLSQHALLLFA----KELVSRHWHSLCGEPLHEPNV-VLQCNAQLLLLAAARQGLGIA 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           LL  ++      LVR++  +  P       +P  L+   +++A
Sbjct: 236 LLSTFLADKETELVRVLPALSDPVDIWLVLHPN-LQKASRVRA 277


>gi|154252816|ref|YP_001413640.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gi|154156766|gb|ABS63983.1| transcriptional regulator, LysR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 297

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 134/292 (45%), Gaps = 12/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L+ F  VA +G  + AA +L +S+S +SR++  +E E+G++L  R  RG  LTE 
Sbjct: 1   MDIEDLQTFVAVADAGGISAAARRLSVSKSIVSRRLFRIEAELGVQLLARTTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       +    +++T +  L  +    SG+LR+A  + LG       L E  L  P +
Sbjct: 61  GLTFRDHAARATAEIDTARDTLLPAGAL-SGRLRVAIPLSLGPTHFAPVLAEMALRNPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I     ++ +D+  +  DCAIR+   +Q S+L+ +++  I     A+P Y+K    P  
Sbjct: 120 HIHTSYSDRFVDLIAEGFDCAIRVGY-LQDSNLVAKRVGPISGKLVASPDYIKAHGAPEK 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++++  H  +  G    + M D + + TV +P G       + ++   +      G GIA
Sbjct: 179 LEQIADHQALMQGMETWQFM-DGDKIVTV-QPQGR-----FKADNATVLAAAAAAGLGIA 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LPD +  D   +  LV +M     PS   Y   P       K++     + 
Sbjct: 232 WLPDCVTHDYVASGALVPVMMRHPVPSAGTYVVRPPGQHPARKVRVLTEMLI 283


>gi|27377385|ref|NP_768914.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27350529|dbj|BAC47539.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 296

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 142/295 (48%), Gaps = 20/295 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D ++LR F  VA +G  + AA +L +S+S +SR++  LE+E+G++L  R  RG  LTE G
Sbjct: 7   DIEELRTFVEVADAGGVSPAALRLGVSKSIVSRRLLRLESELGVQLLARTTRGAALTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLY 119
                VT   Y     T+I++ + ++ P+    G+LR+A  +  G N     + E    +
Sbjct: 67  -----VTFRDYAARVCTEIDVAKETILPAGELRGRLRVAVPLSFGSNYFAPMMAEMARRH 121

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +QI     ++ +D+     DCAIR+   +Q S+LI +++  I+    A+P Y+K    
Sbjct: 122 PQLQIHTCYSDQFVDLIAGGYDCAIRIGY-LQDSNLIAKRVGPIYGKFVASPGYVKEHGS 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + +EL  H  +  G    + M D + + TV RP G       + ++  ++      G 
Sbjct: 181 PETPEELVAHQALMQGTETWQLM-DGDKIITV-RPQGR-----FKADNGTALAAAAAAGL 233

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GIA LPD++  +   +  LV +M     P    Y   P       K++     + 
Sbjct: 234 GIAYLPDFLTNELLASGALVSVMTRHPPPPAGAYVIRPPGQHPARKIRVLTELLI 288


>gi|320173086|gb|EFW48305.1| LysR family transcriptional regulator YhjC [Shigella dysenteriae
           CDC 74-1112]
          Length = 299

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   IQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   EV   L       Q+ +   SG LRI     + +NLL   L EFL L+P I+++L 
Sbjct: 67  QRAKEVLSNLNELDGLFQQDATSISGILRIDIPPGIAKNLLLPRLSEFLYLHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|296136394|ref|YP_003643636.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
 gi|295796516|gb|ADG31306.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
          Length = 295

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 133/291 (45%), Gaps = 11/291 (3%)

Query: 6   DKLRVFYVV---ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+    V   A  GS T AA  L  S  ++ R ++ LE  +GI+LF R  R L+LTE+
Sbjct: 2   DKLKAMRTVVNIADEGSLTAAATALGSSPPAVVRTLAALEAHLGIRLFNRTTRRLSLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        ++   +E  +  L   +++PSG+L I   +  GQ  +   +  F+  Y  +
Sbjct: 62  GQHYVESCRQLLAAIEDAESALTADAIEPSGQLTITAPVLYGQMYVAPAVTRFVQNYDKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L ++ +++  ++ D  IR+   ++ SSLI + L ++     A+P YL     P  
Sbjct: 122 RVNLLLLDRMVNLLEEHIDVGIRIGA-LEDSSLIAQPLCSVRRIVVASPDYLARHGLPNH 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL K N + F +        +      D+P   P    L+ N     ++ C+ G G  
Sbjct: 181 PMELLKVNCVRFSN----GAGPWWTFQENDKPFTVPVTGNLKFNYVTPALEACLAGLGFG 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   Y V +   + +L  ++E    P   +   YP A     ++K F  +I
Sbjct: 237 MFFSYQVSNQLAHNHLQVVLEPFELPQRPISVVYPHARLLPARIKFFIEWI 287


>gi|121635577|ref|YP_975822.1| LysR family transcriptional regulator [Neisseria meningitidis
           FAM18]
 gi|120867283|emb|CAM11054.1| probable LysR-family transcriptional regulator [Neisseria
           meningitidis FAM18]
 gi|325145229|gb|EGC67509.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M01-240013]
 gi|325199012|gb|ADY94468.1| transcriptional regulator, LysR family [Neisseria meningitidis
           G2136]
          Length = 303

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 1/179 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184


>gi|152986112|ref|YP_001349531.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961270|gb|ABR83295.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 304

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 145/309 (46%), Gaps = 20/309 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + ++ F  V   GS + AAE++ LS+S IS+++S LE  +G++L YR  R +  T
Sbjct: 1   MSLRLEDIQAFLNVVELGSISAAAERMSLSKSVISKRVSDLERHLGVRLLYRSTRNVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           E G   ++        L      + L+E+ +   G+LR+   +  G   L   + EF+  
Sbjct: 61  EAGGFFYKSAKASVQDLNNAAESVALRENDL--CGELRVMAPMSFGTLWLGPLVMEFMAR 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            P +++ L LD++ ID   +  D AIR+ + +Q SSLI R+L T       +P YL+   
Sbjct: 119 NPRLEVVLQLDDRIIDFEKEGYDLAIRITR-LQDSSLIARQLGTSRRVVCCSPEYLERHG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RI----SCLQVNSYLSIMQ 233
               ++++  H  I +    P  +  F       R  GEP R+         N+  ++  
Sbjct: 178 ALQRLEDILCHPCIGYSHNTPSQLWSFE-----PRVAGEPARMITPRGRFNTNNGQTMRD 232

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
             V G G+A+LP +IV ++    R++E +         +Y  Y  A   + K++ F  F+
Sbjct: 233 AAVRGLGLAILPLFIVAEDLAAGRLVEALPEERPLDDLIYAMYSRAATLSPKVRLFVQFL 292

Query: 291 --FLKARDW 297
              L A  W
Sbjct: 293 QQALNAPPW 301


>gi|21231049|ref|NP_636966.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768946|ref|YP_243708.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188992060|ref|YP_001904070.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112677|gb|AAM40890.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574278|gb|AAY49688.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733820|emb|CAP52026.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 339

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 139/297 (46%), Gaps = 21/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L +FL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPQFLGKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDVALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----- 237
             EL  H  ++  +      ++ +    +  P GE R   LQ    L+   + +L     
Sbjct: 188 PGELANHTTMSTSE------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMAR 239

Query: 238 -GSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
            G GI +LP+ +  +    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 240 DGFGITMLPETVCAEA---VRNGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 293


>gi|50086132|ref|YP_047642.1| LysR family transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49532108|emb|CAG69820.1| putative transcriptional regulator (LysR family) [Acinetobacter sp.
           ADP1]
          Length = 309

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 138/289 (47%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  + F  VA  GS + AA++ ++S S  S++I  LE+ + ++LFYR  R +TLT++G K
Sbjct: 9   DDFQFFIRVADCGSLSKAAQEANISVSVASQRIQRLESTLKLRLFYRTTRKITLTDEGRK 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L            T +  L       +G LR+ T+   G  +L   +  F LL+P + I 
Sbjct: 69  LLDFGRYWLDDFITLKDTLTARDKPLTGNLRVTTSATFGIKILTKVIANFALLHPTLNIY 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L++++ID+     D AIR+ K +  SSL+ + L+T H    AAP YL     P SI++
Sbjct: 129 LDLNDQNIDLIEHGMDLAIRIGK-LNDSSLVAKPLMTNHRLICAAPSYLNQYGMPHSIED 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H  I         + D   L    R + +  +      NS  +I Q  + G GI+  
Sbjct: 188 LQQHRCILQQH--QNGLTDHWQLIDQKRTVVDVHLKAYFTTNSGEAIRQAALQGLGISNH 245

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V D+    +L+ ++ +      T+Y  +P       K + F +++
Sbjct: 246 SRWHVADDLEQGHLIELLPEYQIEPTTIYAVFPNRQFRQPKTELFLSYL 294


>gi|226807744|ref|YP_002791440.1| putative transcriptional regulator [Enterobacter cloacae]
 gi|226810058|ref|YP_002791753.1| putative transcriptional regulator [Enterobacter cloacae]
 gi|226425971|gb|ACO54064.1| putative transcriptional regulator [Enterobacter cloacae]
 gi|226426285|gb|ACO54377.1| putative transcriptional regulator [Enterobacter cloacae]
          Length = 297

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L+VF  VAR  SFT AA ++ ++ S+IS  +  LE  +GI+L  R  R ++ TE G +
Sbjct: 2   DELKVFLTVARLKSFTKAAAEIGVTPSAISHTVKSLEERLGIRLLARTTRSISTTEAGER 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  +++     L E   KP+G +R+    D+ Q L++  L +FL  YPDIQI+
Sbjct: 62  LINEVGPLMEQVDDAISRLSELREKPTGVIRLTAADDVIQYLIRPVLPDFLSRYPDIQIE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    DI     D  IR    + +  +  +          AAP Y K   +P   Q+
Sbjct: 122 IGIDYGFTDIVDQRFDAGIRPGDVLNNDMIAAKISQNWRQLVVAAPDYFKRYAKPRKPQD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L  HN I         +  + W    D      ++    + NS +  +   + G GIA +
Sbjct: 182 LLNHNCINVRYSDTSGL--YAWEFEKDAQKFSLKVKGQYIANSTIHQLDAALDGLGIAYI 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVY-FCYPEALKNTGKLKAF 286
           P+Y+      +  L+ ++ +   P F  Y   YP   +++    AF
Sbjct: 240 PEYVADGYIKSGKLIAVLTE-WCPYFDGYHIYYPHRRQDSPAFMAF 284


>gi|161620186|ref|YP_001594072.1| LysR family transcriptional regulator [Brucella canis ATCC 23365]
 gi|161336997|gb|ABX63301.1| transcriptional regulator, LysR family [Brucella canis ATCC 23365]
          Length = 297

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE G   
Sbjct: 6   RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+I + +
Sbjct: 66  YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P   ++L
Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQRPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I   D   +   ++++       +  P    +++NS ++     + G G  +LP 
Sbjct: 185 TDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCMLPA 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +I +D      L+  +++ I     +Y  YP       K++A  +F+
Sbjct: 243 FIAEDEIEQGRLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289


>gi|209920981|ref|YP_002295065.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|293453826|ref|ZP_06664245.1| LysR family transcriptional regulator YhjC [Escherichia coli B088]
 gi|209914240|dbj|BAG79314.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|291321952|gb|EFE61383.1| LysR family transcriptional regulator YhjC [Escherichia coli B088]
 gi|323154027|gb|EFZ40233.1| hypothetical protein ECEPECA14_4057 [Escherichia coli EPECa14]
 gi|323160585|gb|EFZ46526.1| hypothetical protein ECE128010_3156 [Escherichia coli E128010]
 gi|323182991|gb|EFZ68392.1| hypothetical protein ECOK1357_3879 [Escherichia coli 1357]
          Length = 299

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 67  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|307316450|ref|ZP_07595893.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306897648|gb|EFN28391.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 310

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF      GS   AA +L  S +++SR +S LE  VG++L +R  R L L+E G +
Sbjct: 5   DAMKVFVAAIDEGSLAGAARRLKRSPTAVSRALSFLEAHVGVELLHRTTRTLKLSEAGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V   LE   +        P G L I++   LG+ +L+  L +FL LYP + ++
Sbjct: 65  YAAACRRVLTDLEEADMLAGGERSAPRGMLTISSPPILGEEILRPILDDFLDLYPTVSVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQ 184
           L+L ++ +++  +  D A+R+ + +  SSLI  +L   +     A+P YL N        
Sbjct: 125 LLLLDRFVNLVDEGVDIALRIGQ-LADSSLISTRLGGDVRRVVVASPRYLANHPRIEEPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL----ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
           +L KH ++ F +     +E +++     ++V R I   PR  C+ VNS  +       G 
Sbjct: 184 DLAKHQILAFTNF---GLESWSFTPAKGSSVPRTIQFTPR--CI-VNSVRAAAASAAAGR 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  L  Y V +   +  L  ++ D   P    +   P+   +  K++AF +F
Sbjct: 238 GLTRLYSYHVAEYVRDGRLEIVLADAEHPPLPAHLIAPQGRMSVPKVRAFVDF 290


>gi|254787878|ref|YP_003075307.1| HTH-type transcriptional regulator YhjC [Teredinibacter turnerae
           T7901]
 gi|237684647|gb|ACR11911.1| putative HTH-type transcriptional regulator YhjC [Teredinibacter
           turnerae T7901]
          Length = 302

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 137/289 (47%), Gaps = 6/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F   A   SFT AAE L ++++ +S  +  LE ++G +LF+R  R + L+  G++
Sbjct: 5   EAMRIFKRTAELLSFTAAAEDLGMAKAKVSAAVQQLEDDLGSRLFHRTTRRVQLSPDGAE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R  S +   L+  + +L+      SG +R+   + + +NL+   L EFL  YP + ++
Sbjct: 65  FLRGCSAIMDDLDALEGQLR-GDTDVSGNIRVDMNVSVAKNLIIPRLPEFLACYPKVTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D   +  D  +R+ + +Q S+L+ R L  +     A+  YL+   EP S ++
Sbjct: 124 LSSVDYFVDPVKEGFDLVLRVGE-LQDSTLVARYLGDMQFMNCASRDYLEKYGEPQSPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           +  H ++ +            W     R   E R+   ++VN+  +    C+ G GIA +
Sbjct: 183 MHHHRVVDYCANSVAGTRSAAWEYWDGRQFQEMRVPYSIRVNNVEAYRAACLAGLGIAQM 242

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   +     N  LV I+      +  V+  YP       K++ F +++
Sbjct: 243 PRVSLHRDAANEQLVEILHAYSAGALPVHLLYPNRRNMPRKVRVFMDWL 291


>gi|190892535|ref|YP_001979077.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697814|gb|ACE91899.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 300

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 18/261 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V   G F+ AA    ++ S++S+ ++ LE  +G++L  R  R L LT +G   +  
Sbjct: 14  VFVSVVERGGFSAAATARRMTPSAVSKLVARLEARLGVRLVNRSTRKLQLTPEGCAFYER 73

Query: 70  TSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
           +  +   +   + E Q SS  + +G++RI T+   G ++L   +  F+ L+P + + +  
Sbjct: 74  SIAILADI--AEAERQASSGEEAAGRIRINTSGSFGNHVLAPLVPAFMALHPAVTLDIAH 131

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  + AD AIR   P++SSSLI RKL        A+P YL    EP S+ +L +
Sbjct: 132 TDRIVDLMEERADVAIRA-GPLKSSSLIARKLGATRKLIVASPDYLGRHGEPRSVADLRR 190

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALL 244
           H  I F     + +E +       R  GE    P    +QV    ++    + G+G+A L
Sbjct: 191 HCRIGFS--YARAIEGWPM-----RESGETVTIPITPGIQVADGEAMRHLALSGAGLARL 243

Query: 245 PDYIVK---DNPNLVRIMEDV 262
             + V+   D   LV ++E+ 
Sbjct: 244 ASFTVRADIDAGRLVPVLEEA 264


>gi|78059746|ref|YP_366321.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964296|gb|ABB05677.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 308

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 132/284 (46%), Gaps = 7/284 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  VA  GSFT AA +++ + S +SR IS LET +  +LF R  R + LTE G +  
Sbjct: 1   MKAFVRVAEEGSFTGAASRMNTTTSYVSRAISALETHLRARLFNRSTRRIALTEAGERYM 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +++  ++  + E  ++  +PSG+LR+ +    GQ+ +   +  F   +P + + L 
Sbjct: 61  RRCEQIFASIDEAEAEAADAQARPSGRLRVHSPTSFGQSYVVPAVVAFRKQHPAVSVDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L  K  D+  +  D +++L    +  S LI ++L  +H    A+P YL     P S+ +L
Sbjct: 121 LSQKVPDMLEEGYDVSLQLTATTLPDSGLISQRLGVLHSVLCASPSYLARHGLPRSVADL 180

Query: 187 DKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           D H  +     L P  +  F+     D P   P  S L VN   ++       +GI  +P
Sbjct: 181 DGHQCVPIVSSLFPHDLWHFDG-PHGDEPFRLPPASFL-VNGADALATALREEAGIGAVP 238

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
                    +  LVR++ +      T +  YP       K+K F
Sbjct: 239 MPTALPAMRSGALVRVLPEHTLQPLTAHVLYPSRQYLDAKIKTF 282


>gi|254489886|ref|ZP_05103081.1| LysR substrate binding domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224464971|gb|EEF81225.1| LysR substrate binding domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 295

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 118/263 (44%), Gaps = 25/263 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  V  SG F+ AA  L    + +SR +S LE  +   L  R  R + LTE+G  
Sbjct: 8   EDLETFIAVVDSGGFSSAALLLDQQVAKVSRAVSRLEAALNCTLLNRTTRRIELTEEGHL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E    LE  +  L+    KPSG+LR+        + L   + EF  LYPDI + 
Sbjct: 68  FIAYAREGLTALEKGEDMLRLMHGKPSGRLRVDAASPFVLHQLTPLISEFTTLYPDIHLD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +  ID+     D AIRL  P + S++  R L    +   A+P YL   REP +  +
Sbjct: 128 ITSHDSIIDLLEHKTDVAIRLGDP-KDSNINSRLLGRSKLRLVASPDYLAKQREPHTESD 186

Query: 186 LDKHNLITFGD--------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           L  H LI F D        LI K M  F                 +  +S  ++ Q C+ 
Sbjct: 187 LMSHRLIAFTDAPSLNDWPLINKVMLTF----------------AIGASSGETVRQLCLA 230

Query: 238 GSGIALLPDYIVKDNPNLVRIME 260
           G G+ALL +++++ + N  +++E
Sbjct: 231 GQGVALLSNFMIRQDLNQGKLVE 253


>gi|17989480|ref|NP_542113.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. 16M]
 gi|62317056|ref|YP_222909.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269049|ref|YP_418340.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus
           2308]
 gi|163844296|ref|YP_001621951.1| hypothetical protein BSUIS_B0103 [Brucella suis ATCC 23445]
 gi|189022321|ref|YP_001932062.1| LysR substrate binding domain protein [Brucella abortus S19]
 gi|225628575|ref|ZP_03786609.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225685962|ref|YP_002733934.1| LysR family transcriptional regulator [Brucella melitensis ATCC
           23457]
 gi|237816617|ref|ZP_04595609.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|254691460|ref|ZP_05154714.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 6 str. 870]
 gi|254695243|ref|ZP_05157071.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|254698343|ref|ZP_05160171.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254699411|ref|ZP_05161239.1| transcriptional regulator, LysR family protein [Brucella suis bv. 5
           str. 513]
 gi|254702530|ref|ZP_05164358.1| transcriptional regulator, LysR family protein [Brucella suis bv. 3
           str. 686]
 gi|254706344|ref|ZP_05168172.1| transcriptional regulator, LysR family protein [Brucella
           pinnipedialis M163/99/10]
 gi|254711366|ref|ZP_05173177.1| transcriptional regulator, LysR family protein [Brucella
           pinnipedialis B2/94]
 gi|254711965|ref|ZP_05173776.1| transcriptional regulator, LysR family protein [Brucella ceti
           M644/93/1]
 gi|254715035|ref|ZP_05176846.1| transcriptional regulator, LysR family protein [Brucella ceti
           M13/05/1]
 gi|254731786|ref|ZP_05190364.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 4 str. 292]
 gi|256014890|ref|YP_003104899.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|256030004|ref|ZP_05443618.1| transcriptional regulator, LysR family protein [Brucella
           pinnipedialis M292/94/1]
 gi|256043021|ref|ZP_05445967.1| transcriptional regulator, LysR family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256158173|ref|ZP_05456085.1| transcriptional regulator, LysR family protein [Brucella ceti
           M490/95/1]
 gi|256252881|ref|ZP_05458417.1| transcriptional regulator, LysR family protein [Brucella ceti
           B1/94]
 gi|256256645|ref|ZP_05462181.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 9 str. C68]
 gi|256262913|ref|ZP_05465445.1| LysR substrate binding domain-containing protein [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260166945|ref|ZP_05753756.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99]
 gi|260544292|ref|ZP_05820113.1| LysR substrate binding domain-containing protein [Brucella abortus
           NCTC 8038]
 gi|260564255|ref|ZP_05834740.1| LysR substrate binding domain-containing protein [Brucella
           melitensis bv. 1 str. 16M]
 gi|260757079|ref|ZP_05869427.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260759551|ref|ZP_05871899.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260762796|ref|ZP_05875128.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882889|ref|ZP_05894503.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|261215606|ref|ZP_05929887.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261216739|ref|ZP_05931020.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261219969|ref|ZP_05934250.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261313789|ref|ZP_05952986.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261318971|ref|ZP_05958168.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261319606|ref|ZP_05958803.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261749861|ref|ZP_05993570.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261753104|ref|ZP_05996813.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|261756330|ref|ZP_06000039.1| LysR substrate binding domain-containing protein [Brucella sp.
           F5/99]
 gi|265987025|ref|ZP_06099582.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265989460|ref|ZP_06102017.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|265996687|ref|ZP_06109244.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|297250000|ref|ZP_06933701.1| hypothetical protein BAYG_02778 [Brucella abortus bv. 5 str. B3196]
 gi|17985362|gb|AAL54377.1| transcriptional regulatory protein, lysr family [Brucella
           melitensis bv. 1 str. 16M]
 gi|62197249|gb|AAX75548.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82939323|emb|CAJ12262.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Brucella melitensis biovar Abortus 2308]
 gi|163675019|gb|ABY39129.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020895|gb|ACD73616.1| LysR substrate binding domain protein [Brucella abortus S19]
 gi|225616421|gb|EEH13469.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225642067|gb|ACO01980.1| transcriptional regulator, LysR family protein [Brucella melitensis
           ATCC 23457]
 gi|237787430|gb|EEP61646.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|255997550|gb|ACU49237.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260097563|gb|EEW81437.1| LysR substrate binding domain-containing protein [Brucella abortus
           NCTC 8038]
 gi|260151898|gb|EEW86991.1| LysR substrate binding domain-containing protein [Brucella
           melitensis bv. 1 str. 16M]
 gi|260669869|gb|EEX56809.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260673217|gb|EEX60038.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260677187|gb|EEX64008.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260872417|gb|EEX79486.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|260917213|gb|EEX84074.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|260918553|gb|EEX85206.1| transcriptional regulator [Brucella ceti B1/94]
 gi|260921828|gb|EEX88396.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292296|gb|EEX95792.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261298194|gb|EEY01691.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261302815|gb|EEY06312.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261736314|gb|EEY24310.1| LysR substrate binding domain-containing protein [Brucella sp.
           F5/99]
 gi|261739614|gb|EEY27540.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261742857|gb|EEY30783.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|262550984|gb|EEZ07145.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|263000129|gb|EEZ12819.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092751|gb|EEZ16960.1| LysR substrate binding domain-containing protein [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264659222|gb|EEZ29483.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|297173869|gb|EFH33233.1| hypothetical protein BAYG_02778 [Brucella abortus bv. 5 str. B3196]
 gi|326410283|gb|ADZ67347.1| LysR substrate binding domain protein [Brucella melitensis M28]
 gi|326553576|gb|ADZ88215.1| LysR substrate binding domain protein [Brucella melitensis M5-90]
          Length = 297

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE G   
Sbjct: 6   RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+I + +
Sbjct: 66  YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P   ++L
Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQRPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I   D   +   ++++       +  P    +++NS ++     + G G  +LP 
Sbjct: 185 TDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCMLPA 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +I +D      L+  +++ I     +Y  YP       K++A  +F+
Sbjct: 243 FIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289


>gi|323174169|gb|EFZ59797.1| hypothetical protein ECLT68_1382 [Escherichia coli LT-68]
          Length = 299

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 67  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|126729996|ref|ZP_01745808.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
 gi|126709376|gb|EBA08430.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
          Length = 297

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 127/290 (43%), Gaps = 22/290 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  ++ F  V  SGS + AA +L +SQ +  RQ+  +E  + + LF+R ARGL LTE 
Sbjct: 7   LDWSLVQTFLAVGESGSLSEAARRLKISQPTAGRQVKQMEEALDVTLFHRQARGLCLTEA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L      +   L    +     S K SG +RI  ++   Q  L   +       P+I
Sbjct: 67  GTALMPHARTMAESLNALSLAAAGRSEKLSGPVRITASVFTSQVHLPPIIARLRQEEPEI 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L+  ++  ++    AD A+R+ +  +   ++ + +  I +  YA+  Y+        
Sbjct: 127 SIDLVPTDRSENLLYREADIAVRMFQ-TEQLDIVTKYIGEIELGLYASKDYIARRGRLTD 185

Query: 183 IQELDKHNLITF--GDLIPKCMEDF------NWLATVDRPIGEPRISCLQVNSYLSIMQY 234
           +     H+++ +   DLI K M +F      +W AT             + +      + 
Sbjct: 186 MAGFFDHDVVGYDRSDLILKGMRNFGLEVQRDWFAT-------------RTDHQTVYWEL 232

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
              G GI          +P + R++ D+  P+  V+    EA++NT +++
Sbjct: 233 VRAGCGIGFAQCLFADADPKVERLLPDIPMPTLPVWLAAHEAMRNTPRIR 282


>gi|325267607|ref|ZP_08134259.1| LysR family transcriptional regulator [Kingella denitrificans ATCC
           33394]
 gi|324980957|gb|EGC16617.1| LysR family transcriptional regulator [Kingella denitrificans ATCC
           33394]
          Length = 296

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 130/271 (47%), Gaps = 15/271 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AAE L +S    S+ ++ LE  +G +L YR+ R L LTEQG +  
Sbjct: 7   LKVFCQVVQSGSFTKAAELLDISIPMASKHVAALEKNLGTQLLYRNNRSLKLTEQGEQYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S +   L     + Q     P G LRI+  +    +     ++ +   YP++++ L 
Sbjct: 67  RDCSHILELLAQANEQAQAGVCTPQGLLRISAPVWFACDYFARLVQAYREAYPEVELMLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D++ D  D A+RL   + + +++ + L  I  +  A+P Y+     P ++ +L+
Sbjct: 127 LTNRAVDLNSDGEDLALRLSYEL-ADNIVAKPLGNIPFYLVASPAYIARHGLPETVADLE 185

Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H  +  ++ D+    +E     +++           +  N    +    + G+GI  +P
Sbjct: 186 RHQAVMPSYADMSKMQIEHSGEKSSLHLH------GTVASNHTQMVAALILAGAGIGYMP 239

Query: 246 DYIVKD---NPNLVRIMED---VITPSFTVY 270
            ++  D   +  LV ++      I P + VY
Sbjct: 240 SWLADDALSDGRLVHLLPQHQINIPPLYAVY 270


>gi|269961831|ref|ZP_06176188.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833409|gb|EEZ87511.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 299

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 144/298 (48%), Gaps = 14/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L +F+ +A+ GS T AA +L ++  S+S+ +  LE ++G+ LF R  R + LTE G 
Sbjct: 6   YNQLMMFHTIAQEGSITAAARKLEIAPPSVSQALKMLEEQLGLPLFTRTTRRIELTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+  T     +L      + + S  PSGK+RI     + Q+LL+    EF   YP IQ+
Sbjct: 66  LLYERTLASMSELNLAVESVSDLSRVPSGKVRITVPRFVYQSLLKPIYIEFCQRYPSIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +K IDI  D  D  IR    ++   + ++  + +    +A+P Y++    P +  
Sbjct: 126 EISVSDKAIDIIRDGFDMGIRFGDRVEEGMIARQLTLPVKEALFASPGYVEQYGLPETPD 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L +H LI +       + P  + +     TV+ P      + L VN    ++     G 
Sbjct: 186 DLKQHKLIQYRFISSNQVAPLNLNNQGETLTVNMP------TALIVNDTDVMIDAAHNGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  +   +V++      +V ++E+   P   +Y  + +  +   +++   +F+  KA
Sbjct: 240 GIGRIVTPMVEEGFKKGEIVPVLEEYWQPYSGLYVYFHKNTQKAKRVRVLIDFLLEKA 297


>gi|167836173|ref|ZP_02463056.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 299

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 5   DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E T+   + S V PSG LR+     +G+ ++   L  FL  YP I + 
Sbjct: 65  LYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPGFLDRYPQISVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRAVNLIEERVDCVLRV-GTLSDSGLVARAIGDLPLINVASPAYLARHGVPHTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++H  + +       +  + W     V R     R++   VNS  + +  C+ G G+  
Sbjct: 184 LERHQPVNYASPSNGRIAPWEWTEGDAVRRVALRGRVT---VNSAEAYIACCLSGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V  +     LV ++ +       +   YP     + + + F  ++
Sbjct: 241 IPAYDVAAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAEWL 290


>gi|254511331|ref|ZP_05123398.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221535042|gb|EEE38030.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 292

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AA+ L +  +++ R I  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       ++      SG L + +   L   L+   L EF   +P + 
Sbjct: 63  EDLLRVAQATEDQFNQLVGRMKGRGDDVSGDLVVTSLASLAP-LVVPTLTEFQQAHPGLI 121

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +  ++   +    A  AIR    P Q  +++Q   +   +  +A+  Y++    P  
Sbjct: 122 VRYLTGDRLFRLEYGEAHVAIRAGAAPDQPDNVVQ-PFIPQEIGLFASKAYIERHGRPSG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +   H+ +  G+        F+ WL    R     R    +  +   + +  + G+GI
Sbjct: 181 LADFADHHFV--GNDDENSRAPFSRWL----RANAPERAITFRCTNNFCMREAVLAGAGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +  +    +P+LV +ME +   S  ++      L  T K++AF +F+  +++ W
Sbjct: 235 GFMARWEAARDPDLVEVMEPLPEWSGKLWLVTHVDLHRTTKVQAFLSFLKGQSKGW 290


>gi|221200768|ref|ZP_03573809.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
 gi|221206964|ref|ZP_03579975.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221173038|gb|EEE05474.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221179340|gb|EEE11746.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
          Length = 310

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 137/300 (45%), Gaps = 21/300 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF  AA  L +S S++S  +  LE ++ ++LF R  R + LTE G +L
Sbjct: 8   ELTAFIAIAEQQSFRAAARVLGISPSALSHAMRSLEAKLSVRLFNRTTRSVALTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R        LE    E   +  +PSG ++I+T+      L++  L EFL  YPDI+++ 
Sbjct: 68  LRRVRPAVADLEDAINEAASARNRPSGTIKISTSEAAALPLVRQVLPEFLDRYPDIRVEF 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D++ +DI  +  D  IRL   +    +  R    + + A A+P YL+    P    EL
Sbjct: 128 VVDSRFLDIVANGFDAGIRLHDDVPRDMIAVRFQPDMVLAAVASPGYLQRHDAPKEPHEL 187

Query: 187 DKHNLITF----GDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +H  I F    G L+   M     N    VD          L + ++  +++  + G G
Sbjct: 188 TQHRCIRFRFESGALLEWEMIRRGKNAHVAVD--------GSLTLGNWNLVVEAALAGIG 239

Query: 241 IALLPDYIVKDNPNLVRIME--DVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LP   V ++    R++      +PSF  +   YP        L+ F + +    R+W
Sbjct: 240 IAWLPVSHVSEHLTAGRLVHLLPEWSPSFPGLCLYYPANRHLPTALRLFADTV----RNW 295


>gi|239820097|ref|YP_002947282.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239804950|gb|ACS22016.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 307

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 122/248 (49%), Gaps = 14/248 (5%)

Query: 10  VFYVV--ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           VFY V     G FT A   L L +S++S ++  LE+ +G++L  R +R   +T+ G + +
Sbjct: 7   VFYFVQVVDRGGFTAAGSALRLPKSTLSHRVQELESYLGVRLLNRTSRQFGMTDIGKEFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H  +  +  +++   +PSG +R+ T +++ Q  L+  L  FL  YP ++I  I
Sbjct: 67  QYAVAMLHSSDVAEEAVRQRLAEPSGVIRLTTAVEIAQFALREILPVFLNRYPKVRIVEI 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +D+  +  D AIR     +Q+S+L+QR L  +  + +A+P YL     P S  +L
Sbjct: 127 ATDRYVDMVGEGFDLAIRGHTGSLQNSTLVQRALADVPWYLFASPGYLAQSGVPESPADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  +      P       W   +  P GE    P     Q N+ +++ +      GIA
Sbjct: 187 GQHASVAMVRNGP-----LQW--QLKGPHGEELAMPIDPRFQSNNMVALKEAACASLGIA 239

Query: 243 LLPDYIVK 250
            LP YI +
Sbjct: 240 ALPGYICR 247


>gi|58038992|ref|YP_190956.1| LysR family transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58001406|gb|AAW60300.1| Transcriptional regulator LysR family [Gluconobacter oxydans 621H]
          Length = 323

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 129/295 (43%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F  V  +GS T A E+  +S + +   +  LE  +G  L  R  R  +LT  G+
Sbjct: 4   FQAMTTFMAVVETGSMTAAGERCGISPTMVGNYVRLLEERLGTSLLRRTTRRQSLTAFGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L+ T+   Q +   PSG LR+   +  G   +   L  +L   P + +
Sbjct: 64  VYFEKCQSILKLLDETEHLAQAAQTLPSGTLRVTAPVTYGTQSVTPCLARYLAENPSVDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L  + +D++ +  D AIRL  P + SSL+ R+L    M   A+P YL    E L  Q
Sbjct: 124 DLVLTERSVDLTHEKFDIAIRLGVP-EPSSLMCRRLTDYRMTLCASPEYLDRREELLVPQ 182

Query: 185 ELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
           +L  H+ + F      P       W    + P G   +   +    NS  ++ +  + G 
Sbjct: 183 QLATHDALAFAYTSSSPWHWARHEW--HFESPKGRVTVEMRRRGLFNSTQAMRRAALGGL 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GIA+LP  +V+D+     L  ++ D   PS  +Y  Y +   +   L +F  FI 
Sbjct: 241 GIAMLPTDLVQDDLKAGTLQALLPDYTLPSRPIYLLYHKERYSAPTLHSFIRFIM 295


>gi|260901544|ref|ZP_05909939.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308110898|gb|EFO48438.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
          Length = 298

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 102/187 (54%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT  G + +
Sbjct: 10  IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTHAGERFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++   I   + + +  G +R+      +G++++   + EF+  YP + I L
Sbjct: 70  HDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYPHVSIDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID+  D  D A R+ + +  +  + RKL+T+ M   A+P Y++    P+  +EL
Sbjct: 130 DFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMPIHPKEL 188

Query: 187 DKHNLIT 193
            +H  +T
Sbjct: 189 AEHRTLT 195


>gi|163856178|ref|YP_001630476.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163259906|emb|CAP42207.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 299

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 137/292 (46%), Gaps = 13/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++RVF  V  +GSF  AAE L +S++ +SR ++ LET +G++L  R  R  +LTE+G 
Sbjct: 4   FEEMRVFTAVVEAGSFVKAAESLRMSKAGVSRHVTELETRLGVRLMQRTTRRQSLTEEGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  + E+   S +  G LR+   +  G   L      F   +P + +
Sbjct: 64  LFYERCKMLLAEVEDAETEVNSRSGEVGGLLRVNAPLTFGVRHLAPLWAVFKAQHPRLTL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D A+R+ + +  S+LI R L +  M   A+P Y++    P   +
Sbjct: 124 DITLADRVVDLVDEGYDVAVRITQ-LADSTLISRHLASTRMVLCASPAYIQAHGRPEHPK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           EL  H  I +     +    F+         GE  +     ++ N+  + +Q  +   G+
Sbjct: 183 ELAMHAAIAYSYWAGRDEWRFHGSE------GEVSVRIQPVMRANNGDTCVQAALAHLGV 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P ++V D     +LV +M         +Y  YP       +++A  +F+
Sbjct: 237 ILQPTFLVGDALRAGSLVELMPQYRCAELGIYAMYPTRRHVPPRVRALVDFL 288


>gi|86144913|ref|ZP_01063245.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|218677137|ref|YP_002395956.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
 gi|85837812|gb|EAQ55924.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|218325405|emb|CAV27516.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 305

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 135/287 (47%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AEQ +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSKVAEQNNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  MLHGAKNVKQAAQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+  D  D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLNNRFVDLVEDGLDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPMQPKD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RIS-CLQVNSYLSIMQYCVLGSG 240
           L +HN + +        E + +L + D          R+S     ++  ++ +  + G G
Sbjct: 183 LVEHNCLQYAYQTTGASE-WQFLHSKDGCTDNDKYIVRVSGSFSTDNATALRKAALGGHG 241

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           +A +P  +V     N  LV I  D++     +Y  YP   +   K+K
Sbjct: 242 VAYVPRCLVYHDIRNGQLVDIFPDLVGKKLGIYAVYPFTRQPPNKIK 288


>gi|221197213|ref|ZP_03570260.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203885|ref|ZP_03576903.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176051|gb|EEE08480.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183767|gb|EEE16167.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 303

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 129/294 (43%), Gaps = 15/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G +  
Sbjct: 12  LVAFEAAVRHASFTRAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL--LQGNLKEFLLLYPDIQIQ 125
              ++V+H L T   E     +KP G L +      G  L  L   L +F   YP+I+++
Sbjct: 71  --AAQVHHLL-TQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPDFRAAYPNIKLR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   +
Sbjct: 128 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPRYLAG--RTLDAAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L    L+   D   + M    W     +DRP  +P+   + +NSY  I+Q  +LG G++L
Sbjct: 186 LANETLLRLEDGQRQWMSWSEWFDQNDIDRPKAQPQD--ITINSYPQIVQMTILGQGVSL 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              Y++    +   LVR+ +   +     Y   P         + F  ++F +A
Sbjct: 244 GWRYMIDACIEAGLLVRVTDASASHGGGYYVISPNDRAQNQAARLFSRWLFEQA 297


>gi|167035256|ref|YP_001670487.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861744|gb|ABZ00152.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 305

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 136/286 (47%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V+   SFT AAE L L +S++S Q+  LE  +G +LF R  R +  T+ G+ L+
Sbjct: 8   LRTFVRVSEVSSFTQAAESLGLPRSTVSEQVRALERLLGTQLFNRTTRRVQATQDGALLY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++   ++  +        + +G+LRI     + + ++   L +FL  +P ++++L 
Sbjct: 68  ERSKDLLSGMDEIESLFSADDAELAGRLRIDLPTMMARRVIIPALPQFLQRFPRLEVELS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   +Q   ++ R +  + M   A+P YL     P ++Q+L 
Sbjct: 128 CTDRQVDLLREGFDCVMRI-GALQDLDVVARPVGQLSMRNCASPAYLARYGVPRTLQDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+ +   +      F +L   +    +     + VN+  +    C+ G G+  +P  
Sbjct: 187 DHQLVHYVRTLGARSAGFEYLQGGELQF-QAMAGVVTVNNAEAYSAACLAGLGLIQVPAV 245

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V ++     LV ++ED   P+  V   Y        +++AF  ++
Sbjct: 246 GVAEHLQRGELVSLLEDWQAPAMPVSLLYARQRHVPRRVQAFMQWL 291


>gi|209548508|ref|YP_002280425.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534264|gb|ACI54199.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 295

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 1/197 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F  VA +GSF  AA +L+LS + + R++  LET+ G+KL  R  R   LTE G
Sbjct: 3   DLTNLKTFVAVATAGSFAKAAARLNLSPAMVGRRVQALETDYGVKLIERTTRTQRLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     S V  +LE         +   SG LRI+    LG   L  ++  F   +P + 
Sbjct: 63  RRFLERASRVIDELEQLNDITGPDNHGISGHLRISGPTTLGVKRLASSIARFANQHPAVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++++D+  +  D AIR+   ++ SSLI RK+ T      A+P YL     P   
Sbjct: 123 LELNLTDRNVDLIAEGYDLAIRVAH-LRPSSLIARKIGTYRFVCCASPRYLGKNGTPTHP 181

Query: 184 QELDKHNLITFGDLIPK 200
           ++L +H  I   +L+P+
Sbjct: 182 EQLQEHRCILSLNLVPR 198


>gi|172063243|ref|YP_001810894.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995760|gb|ACB66678.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 315

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 128/295 (43%), Gaps = 18/295 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G   
Sbjct: 6   NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD+ I+L
Sbjct: 66  LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHTQYPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P   Q+L
Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPEYVKRHGAPARPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  +T   L         W+      + +  ++  +Q N+  S+      G GI +LP
Sbjct: 186 GAHACLT---LCTPAFPTHEWVLEGAEGVEQIHVAGPVQTNTAESLALAIRDGIGIGMLP 242

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            Y   D   +  LVR++ + I     VY  YP            R F+  K R W
Sbjct: 243 LYSAIDALRDGTLVRVLPEHILQKMNVYALYPS-----------RRFVDAKVRTW 286


>gi|157372916|ref|YP_001480905.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157324680|gb|ABV43777.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 323

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 3/200 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F +VA  GSF+ AA    ++ +++SR I+ LE  +G++LF R  R + LT+ G    
Sbjct: 29  LELFCLVAEVGSFSAAAVSSGITPAAVSRSIARLEDRLGVRLFVRSTRHIHLTDAGKSYA 88

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E    ++  + ++Q   ++P+G LR++         L   L  F   YP IQ+ L 
Sbjct: 89  EQCREAIALIDNAERQIQGQQLEPAGLLRVSIPTPYAHYRLLPVLAAFSQRYPKIQLALN 148

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N ++D++    D AIR   P   S+LI RKL    +   AAP YL     P+  ++L 
Sbjct: 149 LNNANVDLTDGGYDLAIRGYHP-ADSNLIARKLEDAELVVVAAPDYLARAGTPVHPEDLA 207

Query: 188 KHNLITFGDLIPKCMEDFNW 207
           +HN I F   +P   +   W
Sbjct: 208 QHNCIQFE--LPSTGKSAPW 225


>gi|83646247|ref|YP_434682.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634290|gb|ABC30257.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 299

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 144/296 (48%), Gaps = 16/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  ++ F   A+ GSFT AAE L  ++S+IS++I+ LET +G+ L +R  R L LT  G 
Sbjct: 6   WIGIQEFVTAAKYGSFTSAAEYLGTTKSNISKKITHLETRLGVTLLHRSNRRLVLTSAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                ++++   LE     + E+    SG + ++    +G++LL   + +F  L+PD+  
Sbjct: 66  VYFEHSTKLLKTLEQNDQLVIETQEHLSGPIVVSLPPGIGESLLMEPICKFQQLHPDVTF 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              +  + ID+     D A RL  P    +LI R L        A+P ++K    P  IQ
Sbjct: 126 VTNVSIQCIDLVEQPFDLAFRL-SPTIDPNLIARPLRRAPYRLCASPQFIKT-HSPKEIQ 183

Query: 185 ELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLG 238
           ++ + + + + D L PK     N + +   P  +  +     +C+  +S  +++Q C   
Sbjct: 184 DITRLSCLAYSDQLSPK-----NAVWSFKNPQNQQVLQLEINACIYSDSVTTLVQACHRH 238

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +GI    D+ V  +    +LV + E+ I+    ++  YP+      +++AF +F+ 
Sbjct: 239 AGILYCSDFFVAKHIAEASLVSLFEEWISNENQLWLVYPDRKSVKRRVRAFIDFVL 294


>gi|296270071|ref|YP_003652703.1| LysR family transcriptional regulator [Thermobispora bispora DSM
           43833]
 gi|296092858|gb|ADG88810.1| transcriptional regulator, LysR family [Thermobispora bispora DSM
           43833]
          Length = 312

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 132/293 (45%), Gaps = 37/293 (12%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + LR+F V AR+GSFT AA +L+ +QS++SR+I+ LE E G  LF R  RG+ LT  
Sbjct: 2   FDTEALRLFDVAARTGSFTAAAAELNYTQSAVSRRIAALEAEAGGPLFERLPRGVRLTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  LHR   EV  +L+    EL        G+LR+         L+   L+ F   +P +
Sbjct: 62  GEVLHRYAREVLERLDRAGEELAALHAGTGGRLRVGAFATANAVLVPHALRAFRRTHPGV 121

Query: 123 QIQLI----------LDNKDIDISM--DYADCAIRLRKP---IQSSSLIQRKLVTI---- 163
            ++L+          L N  IDI++  DY      L  P   +Q   L++ +L+      
Sbjct: 122 AVRLVEGFSADLIDALRNAAIDIAVVSDYF-AGPHLPHPADDVQVVPLLEDELLIALPAG 180

Query: 164 HMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL 223
           H  A A   +L++ RE   I      ++   G    +    F            PR+  +
Sbjct: 181 HRLAGADVVHLRDLREESWIAGPPPDDITPLGQACARA--GFT-----------PRVD-I 226

Query: 224 QVNSYLSIMQYCVLGSGIALLPDYIVKDNPN--LVRIMEDVITPSFTVYFCYP 274
           ++ +++  + Y   G G+ L+P       P   ++R + D + P   VY   P
Sbjct: 227 RITAWIGKLGYVAAGLGVTLVPVMAAPAVPADVVLRPIGD-LAPRRMVYAALP 278


>gi|288935986|ref|YP_003440045.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890695|gb|ADC59013.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 293

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 128/252 (50%), Gaps = 15/252 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+WD  R+F  +AR+G+ + AA+++++  +++SR++  LE  + + LF RH  G  LT+ 
Sbjct: 5   FNWDDARIFLAIARAGTLSGAADKMNMGIATVSRRLDRLEQSLKVPLFSRHQSGYRLTDD 64

Query: 63  GSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G   L R  +  Y  L   +    +  V  +G +R+AT+ +L  + +  +LK  L  YPD
Sbjct: 65  GEALLARAEALEYAGLAFGEAAQLQGHV--AGVVRLATSDNLATHFILPSLKGLLGHYPD 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++++   + +++    AD AIR+ KP  +  L  ++L T+    Y A  YL    + L
Sbjct: 123 LRVEVLSGVQPVNLHRRDADLAIRMVKP-DAGHLTLKRLGTVGFGVYGAASYLAGA-DGL 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ E D          +P       W+    R  G P   C ++ N+ ++ +     G G
Sbjct: 181 SLSEADFVGWPETHQHLPAA----QWITRTLR--GRP---CKVEANTLVAQVSAVSAGLG 231

Query: 241 IALLPDYIVKDN 252
           + +LP ++ + N
Sbjct: 232 LGVLPHFMARAN 243


>gi|261250747|ref|ZP_05943321.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260937620|gb|EEX93608.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 294

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 25/290 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA S  F+ AA+QL  S S +SRQ++ LE  +G+ L  R  R ++LTE G   ++  
Sbjct: 10  FVTVAESSGFSAAAKQLGCSTSHVSRQVTRLEERLGVALLARSTRMVSLTEAGQAYYQQC 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E+   L+    +L     +  G LR++      +N +   L EF   +P++ ++L  + 
Sbjct: 70  KELVIGLQQANEQLSTQQTQLRGVLRVSAAGVFAENYVAPALMEFAKQHPNLTVELNFNT 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             ++   D  D AIR  + +  S L+ RKLV   M    + +Y+     P   ++L  HN
Sbjct: 130 SMVNFIEDGFDFAIRYGR-LNDSGLVARKLVDRPMMVAVSQNYIDEHGLPTHPEQLRHHN 188

Query: 191 LITFGDLIPKCMEDFNWLATV-DRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
            I     +        WL    D+P+ E ++    + N+  +++Q C  G GIA LP   
Sbjct: 189 CIVSNTDV--------WLFEADDKPLDEVKVQGRWKSNNVHTVLQACEKGLGIAYLPKSS 240

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +D   +  LV I+E       + +  Y             R F+ L+AR
Sbjct: 241 FRDAILSGRLVPILEPYWGSGNSSWIVYQN-----------RRFLPLRAR 279


>gi|109899608|ref|YP_662863.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109701889|gb|ABG41809.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 298

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 138/291 (47%), Gaps = 18/291 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F  VAR  SFT AA+ + LS+  ++R +  +E  +G++LF+R  R ++LT QG + 
Sbjct: 6   SLQSFIEVARCSSFTKAADSIGLSRLQVTRHVQDIEQWLGLRLFHRTTRKVSLTLQGEET 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +   +      + +  G +R+AT I LGQN+L   ++ F+ ++P   IQ+
Sbjct: 66  LGFAKQILSSVSDLESRAHSHNHELVGTIRVATPIGLGQNMLFDAIQAFVAIHPKTHIQM 125

Query: 127 ILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +L +    +  +  D A+R + +P Q   LI R+L+ I     A P Y+    +     +
Sbjct: 126 VLSDGLSQLVDERVDIALRYIDQPHQ--QLIARRLMHIDSVLCATPGYIAEHAKLNQPSD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  HN +           + +W    AT D  +  P    +Q N    I++  + G GIA
Sbjct: 184 LLAHNCLVHS-------SNPHWRVVSATSDEKV--PVSGNIQANEMGVILKAALRGLGIA 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP  +      N  LV+++ D  TP   ++  Y         ++AF +F+
Sbjct: 235 CLPSDLANHYLLNRELVQVLPDYNTPGSNLWAVYLSRDHQQNVVRAFIDFL 285


>gi|157157897|ref|YP_001464991.1| LysR family transcriptional regulator [Escherichia coli E24377A]
 gi|157079927|gb|ABV19635.1| transcriptional regulator, LysR family [Escherichia coli E24377A]
          Length = 299

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 67  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|317493102|ref|ZP_07951526.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919224|gb|EFV40559.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 298

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 129/264 (48%), Gaps = 13/264 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS ISR I  LE  +G++L  R  R L++T+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAAQRLGLAQSGISRSIRELEERLGVQLLVRTTRKLSVTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+R     +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYRTVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAMFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIIEERFDAGVRLGSDVGHGMVAVRISPDMEMVVVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L  H  I +    G L    + D +      RP G+   +    +SY+   +   LG 
Sbjct: 186 ADLVVHPCIAYQFGDGSLYAWELND-DGKKITHRPQGQWAFA----DSYME-AKAARLGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIME 260
           G+A +P+ +V D+    +L+R+++
Sbjct: 240 GLAYVPEELVADDLVQGSLIRVLQ 263


>gi|238896115|ref|YP_002920851.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548433|dbj|BAH64784.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 310

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 137/301 (45%), Gaps = 15/301 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  V  SG+F  AA  LH+++S++ + I+ LE  +G+ LF R  R   LTE+G
Sbjct: 12  DLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLTEEG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    E   ++   +  LQ    +  G+LR++  +  GQ  +   L      YP ++
Sbjct: 72  EQFYLQCREALERIREAEETLQRGKDEVQGRLRVSLPVLFGQRCVAPLLFRLSQRYPLLK 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +++  +  D A+R+     + SL  R L    M   AA  YL+    P +I
Sbjct: 132 LELHYSDRQVNLLEEGFDLAVRIGSLADTGSLRARALGEHGMVLCAAAEYLRQQPAPQTI 191

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSG 240
             L++H   T G L    ++ +      D   GE R S    L  + + +I      G G
Sbjct: 192 AGLNEHR--TLGYLHNGQLQKWQ---LYDPQQGEVRFSPQTWLIQDDFAAIAAAVQQGMG 246

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA----LKNTGKLKAFRNFIFLK 293
           IA LPD++V     +  L +++       F ++  +PE      K    + A R  + L 
Sbjct: 247 IAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEGPWLPQKTRAAIDALRGGLPLT 306

Query: 294 A 294
           A
Sbjct: 307 A 307


>gi|330809016|ref|YP_004353478.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377124|gb|AEA68474.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 13/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F    R  +FT AAE+LH++QS++S Q+  LE   G++LF+R +  L LT  G+ 
Sbjct: 8   SSLRAFEAATRHATFTAAAEELHVTQSAVSHQLKHLEQLWGLQLFHR-SSSLHLTSAGAA 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  +  E + KLE T  +L+E + +   +L ++TT       L   L +    +P+I + 
Sbjct: 67  LAPIVREFFMKLEATLADLREQNGR--QRLSVSTTYSFALKWLLPRLPDLAQAHPEILLT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  I+ S    D AIRL       SL    L    +   A+P  L     P +  E
Sbjct: 125 LDSTDSAINFSTTDPDVAIRLGSG-HFPSLFSEFLFREQIFPVASPALLARFGTPQTAAE 183

Query: 186 LDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L ++ L+T     L+PK  +   W A +   +   + S    ++ ++I +  +LG GIAL
Sbjct: 184 LLRYPLLTRDGAALVPKWEQ---WFAQMGVEVTTLKESIRYADTNMTI-EAALLGQGIAL 239

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                V+   N   L R+ E         YF  P+ ++    + +FR ++  +A
Sbjct: 240 ARSGHVEAELNDGRLERLFELPFASPLAYYFVCPKGIETQPHIASFRRWLVTQA 293


>gi|300927985|ref|ZP_07143542.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|301646056|ref|ZP_07245961.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|300463992|gb|EFK27485.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|301075727|gb|EFK90533.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
          Length = 323

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSKNYLTAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|217971857|ref|YP_002356608.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217496992|gb|ACK45185.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 329

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 103/189 (54%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  GS 
Sbjct: 4   EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P + ++
Sbjct: 64  FYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I  ++ +D+     D A  +   + +  L+ R + T  +  YA+P YL     P + +E
Sbjct: 124 VISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAVHGIPKTPKE 183

Query: 186 LDKHNLITF 194
           ++ HN+  F
Sbjct: 184 IEAHNVSMF 192


>gi|330808863|ref|YP_004353325.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376971|gb|AEA68321.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 297

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 117/260 (45%), Gaps = 6/260 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L     VAR  SFT AA QL +SQS +S  I  LE  VG++L  R  R +++TE G 
Sbjct: 6   YSDLLALIAVAREQSFTRAASQLGISQSMLSHSIQRLEARVGVRLLTRTTRSVSVTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L         ++ET  I + E    P+G +RI  T  + + +L   L + L  YP I +
Sbjct: 66  RLLNTVEPRLREIETELIAVAEFGDTPAGNIRITATDHVIETVLWPKLAQALPKYPQISV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++D    DI  D+ D  IRL   + +     R    +      AP Y+++   P   Q
Sbjct: 126 EVVIDYGLTDIVADHFDFGIRLGDGLANGIEAVRIAPDMRFVMVGAPSYMESRAMPTRPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I     +P     + W    D      R+   L  N    I+   V G G+A 
Sbjct: 186 DLMEHECINM--RLPTRGGLYAWELEKDGQEINTRVKGRLVFNGINQILDAAVSGFGLAY 243

Query: 244 LPDYIVKD---NPNLVRIME 260
           +P+ I      N  LV +M+
Sbjct: 244 VPEDIAHPHLVNGTLVPVMQ 263


>gi|331655147|ref|ZP_08356146.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
 gi|331047162|gb|EGI19240.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
          Length = 323

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|218680360|ref|ZP_03528257.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 894]
          Length = 299

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 14/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LRVF  VA   SFT AA++L +S +  S+ +  LE  +G +L  R +R ++LTE G   
Sbjct: 6   SLRVFCTVAELKSFTAAADRLGVSPAMASKHVMQLENRLGTRLLNRTSRHVSLTETGRLY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              T E+  +L+  +  +   +V P G L+++  +          L  +   YPD+ + L
Sbjct: 66  FNQTREMLERLDEVEDAIGNVTVAPRGTLKLSAPVWAATGYFTDMLAAYNRRYPDVCLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L  + +++  +  D A+R     +    L+ R L  +     A+P YL     P ++ E
Sbjct: 126 DLSGRLVNLVDEGFDLALRATSQDRLDPGLVARPLTNVQFRLMASPDYLARTGRPQNVAE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL-GSGIA 242
           L+ H L+ +  +      +     +++ P G  +I+   + ++   +IM    L G G+A
Sbjct: 186 LNGHALLRYSGV------NLGESMSLEGPDGPHKITFRTVMLSDNETIMHLAALRGMGLA 239

Query: 243 LLPDYIVKDNPNLVR--IMEDVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP ++ + +    R  I+   IT  F  T+Y  YP     + K++ F +F+    R+
Sbjct: 240 FLPAWMAEQDIEAGRLEIVLPAITLGFNSTLYAVYPSRKYLSAKVRTFIDFLTASTRE 297


>gi|83648136|ref|YP_436571.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83636179|gb|ABC32146.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 302

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 136/295 (46%), Gaps = 15/295 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L  F  +AR G  T AA+QL +++S++S  +S LE    +KL  R +R   LT
Sbjct: 1   MKEQADLLYTFQAIARCGGVTQAAQQLGIAKSTVSGHLSKLEQIYDVKLVQRSSRQFQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G KL   + E+   L  T+  + E + + SG +RI   +  G  +L   L +F  ++P
Sbjct: 61  AAGGKLLEHSLELVQLLTRTRTCMAEFTKQISGVVRITAPLASGNMILPELLHQFRRIHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +  +L + N+ +D+  +  D A R    +  SSLI R+L  I     A+P +L+     
Sbjct: 121 AVTFELTMSNEQLDLLKNNIDVAFRA-TALNDSSLIGRRLGWIRGVMVASPEFLRQNPLG 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237
             +Q L +  +I +         D +W   V+    E  I+    ++VN   S  Q  + 
Sbjct: 180 EELQRLSELPVIAY-------RSDEHW-RLVNAQGHEREINIRPIVRVNGLESARQLALK 231

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+AL PDYI      +  L+ +  D    +   +  YP  L  +  +K F +F
Sbjct: 232 GVGVALTPDYIAAPALQSSELIHLFSDWRGRATPYHLVYPSRLTPSIAVKRFIDF 286


>gi|262276331|ref|ZP_06054140.1| transcriptional regulator [Grimontia hollisae CIP 101886]
 gi|262220139|gb|EEY71455.1| transcriptional regulator [Grimontia hollisae CIP 101886]
          Length = 298

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 137/289 (47%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F ++  +GS+T A+++  +  ++++R+I  LE ++ IKL +R AR L LTE G  
Sbjct: 4   DDLNLFRLIVENGSYTQASKKTGIPVATLTRRIQALEEDIQIKLLHRDARKLALTEAGQS 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S +  +L      L E     SG LR+A   ++   +LQ  L  FL  YPDI++ 
Sbjct: 64  FYDTCSPLLEQLLEATESLSECCHGTSGTLRLAAPSNIAMKMLQPMLSAFLNAYPDIKLD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +      +D      ++  P + S++I R+L T+     A+P Y+ +        +
Sbjct: 124 LSLFSDTTPSHLDDRHAFFKI-GPQRDSTMIARRLHTVRDILVASPEYIASHAPITDATD 182

Query: 186 LDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L KH L+    L+   +  E    L   D+  G    S L+V     +      G GIAL
Sbjct: 183 LSKHALLKGWPLMRWRLSNESGEQLCLSDQ--GRFEASELRV-----VRAAAKDGLGIAL 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +PD +V+ +     L +I+ D  T    ++  Y +      KL+ F +F
Sbjct: 236 IPDVLVQKDIQSGELQQILPDWTTEPRDIFLMYHDKTHLPAKLRVFIDF 284


>gi|238894238|ref|YP_002918972.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|262043102|ref|ZP_06016241.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330007501|ref|ZP_08305960.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|238546554|dbj|BAH62905.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259039553|gb|EEW40685.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535447|gb|EGF61917.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 301

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L+ F  V  +GSFT AA+ L++  +++S+ I  LE  +G+ L  R  R +T+T +G 
Sbjct: 4   FSALKAFTRVVEAGSFTRAADSLNMPNATLSKTIQQLEAHLGVSLLQRTTRRITVTPEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +   LE        +  KP G LRIA       ++L   L +F+  +PDI+I
Sbjct: 64  EYYEKARCLLEDLEEIDASFNTARNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPDIRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +K  D+     DCAIR   P++ S+LI RK+    +   A P YL+    P S  
Sbjct: 124 DLQVADKPADLISGNIDCAIR-GGPMEDSTLIARKIGEATLVTCATPGYLQRYGTPASPD 182

Query: 185 EL-DKHNLITF 194
           EL   H LI++
Sbjct: 183 ELHHGHRLISY 193


>gi|83646519|ref|YP_434954.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634562|gb|ABC30529.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 288

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 13/245 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ L++  +VA+ GS + AA++L ++ +++ R++  LE E+G KLF R ++G   T   
Sbjct: 2   DWNSLKILALVAQKGSMSGAAKELGVNYTTVFRRMESLENEIGGKLFERGSKGYVATPLA 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K+    + +    E  + ++     +PSG ++I    ++    L   L+     YPDI 
Sbjct: 62  EKMLVFANRMRDGAEQIERQIVGREFQPSGVVKITAPFNIANRYLPEALRPLAQDYPDIT 121

Query: 124 IQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++  N D +++   AD A+R  R P     LI RK+ +I    + A  +L+   +P +
Sbjct: 122 FEILSSNDDFNLNSRVADIAVRATRSP--PDHLIGRKVASIPWAMFVAESFLERFSQPPT 179

Query: 183 IQELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV-LGSG 240
           +  L  + LI   G ++   +  F WL            S +   + L+ M YC   G G
Sbjct: 180 LDTLADYPLIGASGSML--NLPAFTWLEK------NHATSIVARCNELTAMSYCAESGHG 231

Query: 241 IALLP 245
           IA LP
Sbjct: 232 IAFLP 236


>gi|70730993|ref|YP_260734.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345292|gb|AAY92898.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 301

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 12/279 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V  SGS + A   + L+Q ++ R I  LE  +G+KLF R   G   TE   
Sbjct: 11  WDWYRTFLAVLDSGSLSAAGRAMGLTQPTVGRHIDQLEAALGLKLFTRSFDGFAATEAAL 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L     ++       +           G +RI+ +  +G  +L   L      +P + +
Sbjct: 71  ELKPYLLQLAAGEAALRRVASSHGAGVQGSVRISASEIIGVEVLPPILATLRQQHPQLVV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L N+  D+    AD A+R+ +P Q + L+ R++  I +  +A   YL+    PLS++
Sbjct: 131 ELVLSNRADDLLQRQADIAVRMFRPTQEALLV-RRVADIELGLHAHRDYLQQQGTPLSLE 189

Query: 185 ELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L  H LI F      I +  + +  LA              + +S L+ +     G GI
Sbjct: 190 QLAGHALIGFDRETAFIRRLQQQYPMLAR--------GAFAWRSDSDLAQLAALRAGFGI 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
                 + + +P LVR++ +   PS   +    E L+N+
Sbjct: 242 GACQVRLAEADPRLVRVLAEQFAPSLEAWVAMHEDLRNS 280


>gi|332084583|gb|EGI89777.1| hypothetical protein SB521682_4504 [Shigella boydii 5216-82]
          Length = 299

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 67  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|323494253|ref|ZP_08099365.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323311416|gb|EGA64568.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 300

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 140/294 (47%), Gaps = 12/294 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +   +R F ++A+ GSFT AA  L +S+S +SRQIS LE+++ + L  R  R L LTE
Sbjct: 4   SLNLADIRSFVLIAQLGSFTKAALALDVSRSHVSRQISNLESQMKVTLLIRTTRTLKLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G   ++      + +E   +   +   K  G++RI      LG++++     +F+  YP
Sbjct: 64  AGKLFYQQCEVALNGIEQAVLVAVDDVEKVQGEIRINCVGGYLGEDVIGQIACDFMKQYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + Q+ L   +  +D+  +  D A R+ + +  S  I RKL+TI M   A+P YLK    P
Sbjct: 124 ETQVHLDFSSHRVDLLEEDFDIAFRMGQ-LDDSGFIARKLMTIEMSTLASPEYLKAKGIP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              ++L+ H  +T        ++ + +   VD    E  I   LQ  +   +++  +   
Sbjct: 183 SQPKDLNAHQCLT------GSVKRWGYKHKVDNRDVEVAIKGHLQCKNGRVLVKGALNHQ 236

Query: 240 GIALLPD-YIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P  Y V+  D   LV + ED   PS      Y        +L+ F +F+
Sbjct: 237 GIIRVPKVYCVEAIDEGKLVEVFEDWHIPSVAFSAIYHRDRYQPKRLRVFIDFV 290


>gi|149921365|ref|ZP_01909819.1| regulatory protein, LysR:LysR, substrate-binding [Plesiocystis
           pacifica SIR-1]
 gi|149817798|gb|EDM77262.1| regulatory protein, LysR:LysR, substrate-binding [Plesiocystis
           pacifica SIR-1]
          Length = 303

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 139/299 (46%), Gaps = 18/299 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA    F  AA QL +S+++++R +S LE  +G++L  R +R ++ TE G+   
Sbjct: 7   MRVFVAVAECRGFAKAARQLGISRAAVTRAVSTLERSLGVELLSRTSRAVSPTEVGASYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++ +      +  +P+G LRI +++  GQ  +   L ++L  YP+++ Q +
Sbjct: 67  VDCRRILADVDESHAAAAGAHARPTGTLRITSSVLFGQLYVLPILTDYLDAYPEVRAQAL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  ++  +  D A+RL + +  SSL+  ++  +     A+P YL+    P   ++L 
Sbjct: 127 FVDRVTNMVAEGIDVAVRLGQ-LPDSSLMATRVGRVRRLICASPAYLERHGTPRRPEDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYCVLGSG 240
           +H ++  G       E   W    +   GE       PR++C   ++  + +     G G
Sbjct: 186 EHRVVVGGGE----GERVEWHLGTEEGAGEERIVRVRPRLAC---STNHAAIAAATSGWG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  +  Y V    +   LV ++ED       V+  YP       K++AF      + R+
Sbjct: 239 LTRVLSYQVGEALEQGRLVAVLEDCEPAPIPVHIVYPGGRHAPAKVRAFVELAAPRLRE 297


>gi|94497500|ref|ZP_01304070.1| transcriptional regulatory protein [Sphingomonas sp. SKA58]
 gi|94423131|gb|EAT08162.1| transcriptional regulatory protein [Sphingomonas sp. SKA58]
          Length = 297

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 139/295 (47%), Gaps = 16/295 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  V    SFT AA+ L +S++++S+ ++ LE  +   LF R +R L LTE G
Sbjct: 5   DFEAWAMFAAVVEHRSFTDAAKALSVSKATVSKAVTRLEEHLDTSLFNRTSRRLALTESG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +  +    +   ++ + + SG +R+   +  G   +   + +F  ++P + 
Sbjct: 65  KRLADHAQRILAEGRAAEEAARDETAELSGVVRLGAPMTFGLLRIAPLVAQFTKMHPLVD 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  IDI     D  IR+   +  SSL  R+L  +++H  A+P YL     P   
Sbjct: 125 IDLHLSDAKIDIVEMGLDATIRIAD-MPDSSLRARRLADVNLHVIASPAYLDARGRPAHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLG 238
            +L  H+ I + +++P  +  F+         G+  ++      L +NS  +++     G
Sbjct: 184 SDLGVHDCICYSNVMPSDVWRFSG-------PGQQVVAVQVRGRLTINSGEAMLPALRDG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA LPD+IV +      L  I+ D  +P   ++   P +     ++ A  +FI
Sbjct: 237 IGIARLPDFIVGEALAKGELEEILIDWRSPPVGLHLVTPPSRLRPARVDALIDFI 291


>gi|145698322|ref|NP_417978.2| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|238902610|ref|YP_002928406.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|3916007|sp|P37641|YHJC_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator
           yhjC
 gi|145693193|gb|AAC76546.2| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|238862321|gb|ACR64319.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|315618448|gb|EFU99035.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Escherichia coli 3431]
          Length = 299

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 67  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|330817350|ref|YP_004361055.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327369743|gb|AEA61099.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 295

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 144/295 (48%), Gaps = 22/295 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ LR F  VARSGS T AA +L  SQS++SR+I  LE  +G+ LF R   G  LT++
Sbjct: 1   MDWNDLRYFLSVARSGSLTQAAGELKTSQSTVSRRIGELEGSLGMSLFARSQTGYVLTDE 60

Query: 63  GSKLHRVTSEVYHK---LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G ++ R   +V      LE     +++S   P G +R+AT+ +L  +L+   +  F   +
Sbjct: 61  GREVLRHAEQVEDSILALERGAAGIEKS---PVGTVRLATSENLATDLVIPAMPAFRERF 117

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I +++I      ++    AD A+R+ +P +  +L  R++  +    Y +  YL   R 
Sbjct: 118 PGICLEIITSTVTAELGRREADIALRVVRPTR-GNLKVRRIGHMRYSVYGSRDYL--ARH 174

Query: 180 P-LSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           P +  + L   + I + D    +P       WLA   R   E ++  L  +S  + +   
Sbjct: 175 PAVDGEPLGGRHFIAWDDGHAHLPAAA----WLA---REHPEAKV-ALVTSSLPTQIAAV 226

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G G+A++PD++  D    VR++      S  ++      L  + +++A  +F+
Sbjct: 227 RAGLGLAVIPDFLAVDE-AFVRVVPAERMFSNELWLVTHADLVASARVRAVADFL 280


>gi|241663755|ref|YP_002982115.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240865782|gb|ACS63443.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 294

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 118/259 (45%), Gaps = 6/259 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  VAR+G+   AA++L + Q+++ R+I+ LE E+  KLF R +  L LT  
Sbjct: 1   MNWDNGRFFLAVARTGTLRGAAQRLGVDQATVGRRIAALEDELSAKLFLRTSTALVLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +     T +  +     + +G +R+ATT  +    +   + +    +P I
Sbjct: 61  GEALIGPAEAMEQAAHTIERRVAGIDDQLAGTIRVATTDTMAATFVLPAIAQLRQRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  +      +++   AD A+R  +P  S  LI R++  +    YA+  Y+    EP  
Sbjct: 121 DVVCMASKSIANLTKREADVAVRTLRP-DSPDLIARRIGQMETGIYASRSYVAARGEPEE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+    L P+    + W      PI   R+  LQ NS L++ +    G G+ 
Sbjct: 180 GTAFAGHDLV----LYPRNEVPWMWEDLCGEPITRGRV-VLQSNSALALCEAVAAGIGMT 234

Query: 243 LLPDYIVKDNPNLVRIMED 261
            L     +  P LVR++ +
Sbjct: 235 ELVCRRAQAYPQLVRVLPN 253


>gi|110641678|ref|YP_669408.1| transcriptional regulator [Escherichia coli 536]
 gi|191172836|ref|ZP_03034372.1| transcriptional regulator, LysR family protein [Escherichia coli
           F11]
 gi|300972441|ref|ZP_07171948.1| transcriptional regulator, LysR family [Escherichia coli MS 200-1]
 gi|110343270|gb|ABG69507.1| hypothetical transcriptional regulator protein [Escherichia coli
           536]
 gi|190906842|gb|EDV66445.1| transcriptional regulator, LysR family protein [Escherichia coli
           F11]
 gi|300309165|gb|EFJ63685.1| transcriptional regulator, LysR family [Escherichia coli MS 200-1]
          Length = 223

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 10/205 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +T TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVTPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELERELESLIQLNGAPSGNIRLSAGEHAARSLVWPKLKSFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    +P Y      P + 
Sbjct: 125 VELVVDNGFVDIVDGRFDAGIRLGESVDKDMIAVRIGPDMRMAMVGSPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL 208
            EL  H          +C+ +  W+
Sbjct: 185 HELQNH----------RCINNVTWI 199


>gi|295095911|emb|CBK85001.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 310

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 129/282 (45%), Gaps = 22/282 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  + +F+  A +  +S S +SR I  LE  +G +LFYR+ R +  TE G    
Sbjct: 12  LLIFIDVYETQNFSVVARREGISASQVSRVIHQLEDALGQQLFYRNTRAIMPTESGHLFV 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   +E  + EL E + +PSG LRI   +  GQ  +   L   L  YP + I+L 
Sbjct: 72  RYARAMAGNMEDARRELDERAREPSGTLRINGPVFFGQRHIAPGLPGLLARYPRLSIELT 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  ID   D AD   R+   +  SS   R       H  A+P YL+    P    +L 
Sbjct: 132 LTDDFIDPHRDAADVIFRI-GALTDSSFHARVFGQQFYHLAASPDYLQKHGAPEGPDDLS 190

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGSGI 241
           +H+ + + G   P       WL  + RP GE     P +  +  N+  +++   + G G+
Sbjct: 191 RHHCLVYRGSSGPN-----RWL--IRRP-GEAWVHYPIVPLMTSNNAETLLIAALGGMGV 242

Query: 242 ALLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEA 276
            L PD++V +   +  LV ++ +    + T   T+   YP A
Sbjct: 243 VLFPDWMVSERLKSGELVALLPEMECSINTEPLTIAAIYPNA 284


>gi|206578294|ref|YP_002237000.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206567352|gb|ACI09128.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 305

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 130/282 (46%), Gaps = 11/282 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  SG+F  AA  LH+++S++ + I+ LE  +G+ LF R  R   LT
Sbjct: 1   MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G + +    E   ++   +  LQ    +  G+LRI+  +  GQ  +   L      YP
Sbjct: 61  EEGEQFYHQCREALARIREAEEALQRGKGEVQGRLRISLPVLFGQRCVAPLLFRLSQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +++  +  D A+R+     + SL  R L    M   AA  YL+    P
Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGNLADTGSLRARALGEHGMVLCAAVEYLRRQPAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237
            +I  L +H   T G L    ++ +      D   GE R S    L  + + +I      
Sbjct: 181 QTIAGLSEHR--TLGYLHNGQLQKWQ---LYDPQQGEVRFSPQTGLVQDDFAAIAAAVQQ 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           G GIA LPD++V     +  L +++       F ++  +PE 
Sbjct: 236 GMGIAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEG 277


>gi|170721871|ref|YP_001749559.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759874|gb|ACA73190.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 303

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 19/297 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A++GSFT AA  L L++S++ + I+ LE  + ++L  R  R L+LT++G   +  
Sbjct: 11  AFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGLVAYER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   L+  +  + +   KP+G LR+   + LGQ  +   L  +L  +P+++  +   
Sbjct: 71  WRQILDDLDEVESTMAQRRGKPTGTLRLTAPLSLGQRHVLPVLDAYLKQWPELRADIRFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R+  P + S L+ R +        A+P YL+    P    +L  H
Sbjct: 131 DRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPEYLRQHGVPQVPADLYGH 190

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVLGSGIALL 244
           + I F  LI +  +   W      P G     EP    L ++S  +++     G G+  L
Sbjct: 191 DKIAF--LIGE--KSMAW--RFHTPEGLHLCEEP--GRLNIDSSEAMLDGARAGFGLIHL 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P YI  ++     LV ++     P+  +   YP     + ++   R FI L    W+
Sbjct: 243 PTYITGEDLRAGTLVEVLHAYRPPADPIRVVYPSKRHLSPRV---RGFIDLLVASWE 296


>gi|134295543|ref|YP_001119278.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134138700|gb|ABO54443.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 301

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE+ +G++L +R  R  TLT+ G
Sbjct: 5   DLPALETFARIVSAGSLSAAARELDLSLSVVSKRLAHLESRLGVRLLHRTTRQQTLTDDG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  + +     +G LR+    +LG+  +   +  F   +P + 
Sbjct: 65  AQFHAQVLRILAEIERAETLMSDRRGTVNGMLRVTAPGELGRVRIVPLVAAFQRQHPALT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    AAP Y+     P   
Sbjct: 125 VQLMLTDTIVDLLAQDIDVAVRI-GSLADSTMIARELAPNHRVLCAAPSYVATHGLPAHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  GD  P+    F+        +     + L  N   +   + + G+GIAL
Sbjct: 184 ADLRAHRCIVLGDQ-PRTEWRFD---GAHGSVAVDVTAALLTNDGGAARSFALEGAGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD-WK 298
              + V    D   LVR++     P+  ++  YP       +++AF  F+  + RD W+
Sbjct: 240 KSIWDVDADLDAGTLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVEFLREQLRDAWQ 298


>gi|310765154|gb|ADP10104.1| LysR-family transcriptional activator [Erwinia sp. Ejp617]
          Length = 292

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 131/287 (45%), Gaps = 19/287 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA +  L +SS+S++IS LE  +GI+L  R  R L LT  G +  
Sbjct: 8   MALFALVAECGSFTAAAVRAGLPKSSVSQRISQLEQALGIRLINRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + ++     PSG+LRI +   +G  LL      F   YPD+ +++ 
Sbjct: 68  VHCQEMLQASERAGMAIERLRDNPSGRLRITSPAGIGATLLARVNTAFQHKYPDVTLEVS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  D+     D A+R  +P Q SSLI R++        A+P YL +       ++L 
Sbjct: 128 ISDEMCDLVQSRFDVALRTGRP-QDSSLIGRRIGYCQRLLVASPDYLADYPALAHPRQLS 186

Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIA 242
            H  I        L+ +  E + WL           +    +   L   + C L S GI 
Sbjct: 187 DHRCIAHRAWNEWLLKRNEEYYRWL-----------LPPTHMTDNLVYARECALSSGGIT 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LLP ++  +   LV+++ +       ++  YP    N+  L  F +F
Sbjct: 236 LLPRFLSGE--KLVQVLPEWEVEGNELWLVYPSRKLNSPALSRFVDF 280


>gi|307140210|ref|ZP_07499566.1| putative DNA-binding transcriptional regulator [Escherichia coli
           H736]
 gi|331644230|ref|ZP_08345359.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
 gi|331036524|gb|EGI08750.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
          Length = 316

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|167573031|ref|ZP_02365905.1| Transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 302

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 19/306 (6%)

Query: 1   MSFDWDKLRVF--YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           +  +W     F   VVA   SF  AA  L +S S++S  +  LE  + ++LF R  R + 
Sbjct: 3   VGVNWGGPATFRGIVVADQRSFRAAARTLGVSPSALSHAMRNLEARLDVRLFNRTTRSVA 62

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LTE G +  R        LE    E   +  +PSG +RI+ + +  + L++  L  F+  
Sbjct: 63  LTEAGEQFLRRVRPAIADLEDAVNEAAAAHNRPSGSIRISASENAARPLIRHVLPGFVAA 122

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YPDI ++ ++D + +DI  +  D  IR+ + +    +  R    +   A A+P YL +  
Sbjct: 123 YPDIHVEFVVDTRLVDIVANGFDAGIRVLEDVPRDMIAIRFGPDMRFAAVASPAYLAHHA 182

Query: 179 EPLSIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            P +  +L +H  I F    G L    +E     A++D  +  P    L + +   ++  
Sbjct: 183 PPQAPHDLMRHRCIRFRFESGTLYRWDLEHRGKTASID--VDGP----LTLGNLNLMVDA 236

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIME--DVITPSFT-VYFCYPEALKNTGKLKAFRNFIF 291
            + G GIA +P+++  ++  L R++      +PSF  +   YP        L+ F   + 
Sbjct: 237 ALEGIGIAWVPEHLAAEHLALGRLVHLLPEWSPSFPGLCLYYPANRHPPTALRLFAQAV- 295

Query: 292 LKARDW 297
              RDW
Sbjct: 296 ---RDW 298


>gi|126175905|ref|YP_001052054.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125999110|gb|ABN63185.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 344

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 103/189 (54%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  GS 
Sbjct: 19  EDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSH 78

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P + ++
Sbjct: 79  FYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLE 138

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I  ++ +D+     D A  +   + +  L+ R + T  +  YA+P YL     P + +E
Sbjct: 139 VISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAVHGIPKTPKE 198

Query: 186 LDKHNLITF 194
           ++ HN+  F
Sbjct: 199 IEAHNVSMF 207


>gi|258622187|ref|ZP_05717213.1| Transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258585511|gb|EEW10234.1| Transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 295

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 127/280 (45%), Gaps = 17/280 (6%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSVKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+IQLI         +       R    + S S     L       YA+P YL+    P 
Sbjct: 121 IRIQLITTTPGQLPELHLDLFISREIDQLNSLSFKATPLFEHQAGFYASPSYLEKHGTPK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           ++QEL +HN++ +G+      + +  + T        RI+        +  ++      G
Sbjct: 181 TLQELTQHNVLCWGE------QTYREVKTAQ----GKRITLTGNFATTNPEALFYAGKAG 230

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            G+ +    ++K+     NLVRI+ DV     TVY  YP+
Sbjct: 231 MGVIVTGHIMIKEELKQGNLVRILPDVTIDQATVYAYYPK 270


>gi|207722572|ref|YP_002253008.1| hypothetical protein RSMK05208 [Ralstonia solanacearum MolK2]
 gi|206587754|emb|CAQ18336.1| hypothetical protein RSMK05208 [Ralstonia solanacearum MolK2]
          Length = 298

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 19/212 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   G+F  AA +L L+ SSIS+ +  LE E+G+ L +R  R L+LTE G   
Sbjct: 6   RMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLTEAGRVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   + V H     Q ++     +P+G+LRI    +L    L   L++F+  +P + ++ 
Sbjct: 66  YEECANVVHAAARGQQKVAALRDEPAGELRITAPSELAHQHLVPALRDFIAAHPRLAVRF 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ID+     D A+R+ + ++ SSL+ R++        AAP YL+    P +    
Sbjct: 126 ELGDEKIDLVEHRVDLAVRIGE-LRDSSLVARQIAWFDELICAAPDYLERTGPPTT---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP 218
                       P+ + D +WL  +  P+GEP
Sbjct: 181 ------------PQALADLDWL--IFTPLGEP 198


>gi|254253984|ref|ZP_04947301.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124898629|gb|EAY70472.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 315

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 128/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G   
Sbjct: 6   NMRVFARVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGENY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++   +E  + E   +  +P+G LR+ +   +G + +   L  +   YPD+ I+L
Sbjct: 66  LRRCRQILADVERAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHAQYPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P    +L
Sbjct: 126 SLSQRTPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGAPARPHDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H  +T   L         W+  ++ P G  +I     +Q N+  S+      G GI +
Sbjct: 186 GAHACLT---LRTPAFPTREWV--LEGPDGVEQIHVAGPVQTNTAESLALAIRDGIGIGM 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   D   +  LVR++   I     VY  YP            R F+  K R W
Sbjct: 241 LPLYSAIDALRDGTLVRVLPRHILQKMNVYALYPS-----------RRFVDAKVRTW 286


>gi|167579564|ref|ZP_02372438.1| LysR family regulatory protein [Burkholderia thailandensis TXDOH]
          Length = 320

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 142/293 (48%), Gaps = 16/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   +  +   Y D+ +++
Sbjct: 66  YERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAQRYADVTVEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +
Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPEYLAKHGTPTTIAD 185

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241
           L  H+ I       L+   + D    + V      P    + VN +L  ++  VL G+GI
Sbjct: 186 LQHHSFIRREPNETLLDAAISDVAAASRV------PLSGNVIVN-HLEGLRVAVLDGAGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           ALL   +V ++     LV ++ D + P    +Y  Y      + K+++F +F+
Sbjct: 239 ALLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFL 291


>gi|119900148|ref|YP_935361.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119672561|emb|CAL96475.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 306

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 21/295 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR++  V R   F  +A +L +S + +S++I+ LE  +G KL +R  R ++LTEQG  
Sbjct: 8   EDLRLYCTVVRRRGFAASARELGVSNAYVSKRIALLEDALGAKLLHRTTRSVSLTEQGEV 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + +    +   ++     +    + P+G LR+ T+   G+N +   L      YP ++IQ
Sbjct: 68  VLQWAQRIVDDVDRLAEAVSAEKMAPAGLLRVCTSSGFGRNRVGPALAALAERYPAVEIQ 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +     IR+   ++   LI R++        AAP Y+     P  + E
Sbjct: 128 LELLDRPVDLIGEGFQLDIRV-GAVREPDLISRRIARNERVLCAAPDYVARHGTPADLAE 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRP----IGEPRISCLQVNSYLSIMQYCVLGS 239
           L +H  I    +I +  +DF  W L   D P    +G P    L  N+   + Q+ + G 
Sbjct: 187 LARHRCI----VIRERDQDFGRWTLTGPDGPETVKVGGP----LSANNGEVVRQWALAGH 238

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFI 290
           GI L   + V   P L R     + P++     V+  YP  L ++ K++    F+
Sbjct: 239 GIILRSRWDV--GPALARGELVQVLPAYRQEADVWAVYPSRLSSSAKVRVCVEFL 291


>gi|94497612|ref|ZP_01304181.1| transcriptional regulator, LysR family protein [Sphingomonas sp.
           SKA58]
 gi|94423029|gb|EAT08061.1| transcriptional regulator, LysR family protein [Sphingomonas sp.
           SKA58]
          Length = 297

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 132/288 (45%), Gaps = 10/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F +VA  GSF +AA+ L L+ S++SR I+ LE  +G+ L  R  R L LT +G    
Sbjct: 8   IETFLMVATEGSFANAAKALRLTPSAVSRSIARLEQRLGVTLVRRTTRALALTREGMAYR 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +  L E    P G LRI  +   G   L   L +F   YP ++I L 
Sbjct: 68  DRMMVLLTDMMELETGLGEERGAPRGVLRINASPSFGVEWLIPMLPDFRARYPAVRIDLT 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  + AD AIR+  P++ + L  +KL    M   A+P YL     P +  +L 
Sbjct: 128 LSDAIVDLVEERADIAIRI-GPLRDTRLRAKKLGHSRMALVASPDYLARRGTPATPNDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F     + ++  +W   V R I + P       NS   + Q  V G GIA    
Sbjct: 187 GHDCLRFS--FRRSVD--SWPFRVGRKIVQLPVEGAYFGNSGEVVRQMAVAGCGIARHGY 242

Query: 247 Y-IVKD--NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + +D  +  LV I+ D        ++  Y    +   +++AF +F+
Sbjct: 243 FHVARDLKDGRLVEILADYAAGDGEDIHALYAAEDRTAARVRAFLDFL 290


>gi|271500360|ref|YP_003333385.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343915|gb|ACZ76680.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 296

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 131/289 (45%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GS T AA +L +S+S  +R I+ LE  +G++L +R  R L LT  G+ + 
Sbjct: 7   MQVFVAVADLGSLTAAANKLDISRSMATRYIAALEHWLGVRLLHRSTRSLGLTSVGNDML 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E         + +P G +R+A+++  GQ+ L   L  +   YP    +LI
Sbjct: 67  VRCRQILALSEDMAALSSSGNTEPHGVIRVASSVSFGQSYLAQALGRYRARYPHTTTELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ I ++ +  D A+ +       +LI + L        A+P YL +   P +  +L 
Sbjct: 127 LTDRAIKLAEERIDLAVEVTNS-PDPNLIAKPLGRCASVVCASPDYLAHHAPPTTPNDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
           +HN +    L         W  T      + R+     +  N  L ++     G GIA L
Sbjct: 186 RHNCLNHIRL------GREWRFTHRESGAQHRVMVSGRVVANDTLVLLTAARAGEGIACL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+++V+   D   LV ++ D  T +  +Y CY         L+   +F+
Sbjct: 240 PEFVVRGGLDAGELVPLLGDYQTQALGIYACYMSRRHMPATLRTLLDFL 288


>gi|187919501|ref|YP_001888532.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717939|gb|ACD19162.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 331

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 131/299 (43%), Gaps = 26/299 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFVRVVEAGSFTAAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTTAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   + T + E   +  +PSG LR+ +   +GQ+ +   +  +  LYP++ ++L
Sbjct: 66  LTRCKQILADVATAEEEASCAHERPSGALRMHSFASIGQHYVLPAISRYRALYPEVTVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    AD A+     +  S L+   L T      A+P Y++    P    +L
Sbjct: 126 TLSQRMPDLFEGSADVAVIGASTLPDSELVSLPLGTTFSIMCASPAYVRAHGAPQQPADL 185

Query: 187 DKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
             H  LI      P      +W+  +D P G   +     + VN   S++     G GI 
Sbjct: 186 AHHECLILHTPAFPP----HDWV--LDGPNGSEMMGVNGPVHVNIAESLIVAIREGMGIG 239

Query: 243 LLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y     ++D   LVR++ +       VY  YP            R F+  K R W
Sbjct: 240 MLPLYAAISGLRDG-TLVRVLPEYTAQKMNVYALYPS-----------RKFVDAKTRTW 286


>gi|254469896|ref|ZP_05083301.1| LysR-family transcriptional regulator [Pseudovibrio sp. JE062]
 gi|211961731|gb|EEA96926.1| LysR-family transcriptional regulator [Pseudovibrio sp. JE062]
          Length = 301

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 130/276 (47%), Gaps = 18/276 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  VA++GSF+ AA+ LH+  S++SR++S LE ++G KL  R  R + LTE G
Sbjct: 3   DLNAIAIFAEVAKAGSFSAAAKNLHVPLSTVSRKVSELEAQLGTKLLERTTRRMRLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++               +++     SG L++    +L + L    + +F L YP+++
Sbjct: 63  EQFYKTCLPGLEAFRAADRVVEQRQSALSGDLKVTIPPNLAEALFIPVIGQFRLQYPEVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+I+  +++D   D  D + R+  P   S L   KL T      A+P Y+     P   
Sbjct: 123 VQMIVSERNLDFIEDDVDLSFRV-GPKPDSGLTLTKLATYCHVLVASPTYIAEHGVPDHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVL 237
            +L +H LI FG        + +W  ++ R   E      P+I    +N Y ++      
Sbjct: 182 DKLPEHALIGFGFW---QKPEVSW--SLSRKNDERVIRFTPQIG---INDYAAMQSAIKA 233

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVY 270
           G GI  LP  + +D      LV ++ D   P   ++
Sbjct: 234 GLGIGELPSILCQDALAKRALVEVLPDWTFPEIDLH 269


>gi|71280432|ref|YP_268039.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71146172|gb|AAZ26645.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 301

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 131/272 (48%), Gaps = 7/272 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  +GS T AAEQ+++++S++S+++S LE ++GIKL  R  R  ++TE G +
Sbjct: 5   EDMYIFLRVVETGSITKAAEQMNIAKSAVSKRLSLLEQKLGIKLINRTTRKSSITEAGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  +++    +   S     G L IA  +  G   L   L  FL  + D+++ 
Sbjct: 65  YYQRSKLIIDEVDELNSQTSSSKRALEGTLNIAVPLSFGLTHLAPALDLFLQQHSDLKLN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ IDI     D A R+ + + +SSL  RK+  I     A+P YLK   EP +  +
Sbjct: 125 INFSDQKIDIVEQGVDLAFRIGQ-LDNSSLQARKIAPIKHVLCASPEYLKLQGEPKTPND 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H +I +G+L    ++  N          EP I     +   S+ +      GI  LP
Sbjct: 184 LKNHKVIKYGNLDQGGLKLLNKEGEEHIVHFEPHIIANNGDFLKSLAES---NHGITYLP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            +IV  +     LV ++ D    S   Y  YP
Sbjct: 241 SFIVWQSLATKKLVPVLADYKIESMHAYAVYP 272


>gi|309701629|emb|CBJ00936.1| LysR-family transcriptional regulator [Escherichia coli ETEC
           H10407]
          Length = 299

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAVRLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|296104327|ref|YP_003614473.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058786|gb|ADF63524.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 295

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 134/301 (44%), Gaps = 24/301 (7%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V  SGSFT AA +L +S   + + I+ LE+E+G +L  R+ R  +LT+ 
Sbjct: 2   DKLRGMETFIAVVESGSFTGAASRLDMSSVMVGKYIALLESELGTRLLERNTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         V  ++   +  ++     P+G LR+      G  ++      FL  YP +
Sbjct: 62  GRVYFDEAKRVLEQVAIAESAVERLRAAPAGTLRVTAPTSFGGCVIAPLTATFLQRYPAV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L L N+ +D+  +  D AIR+   I++  L+ + L   +M   A+P YL     P +
Sbjct: 122 RIELDLTNRMVDLVEEGVDLAIRIGD-IRNDDLVAKYLCPYNMVICASPDYLARHGTPQT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYC 235
             +L  H           C+    W       L  V+  +   R + L+ N    +    
Sbjct: 181 PADLVDH----------LCLSHTVWTARNEWRLPGVEGEVRWKRDAILRCNDGYGLRMAA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G+G+ L P+ +V +   +  LVR++E        V+  + + L+   KL  F   I L
Sbjct: 231 RAGAGLLLQPEVLVAEELASGRLVRVLEPFTPAPRPVHLLWRQDLRPLPKLTEFIAHILL 290

Query: 293 K 293
           +
Sbjct: 291 R 291


>gi|158422536|ref|YP_001523828.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158329425|dbj|BAF86910.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 312

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 141/288 (48%), Gaps = 12/288 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R+   +A + S   AAE L ++ S++ R++  LE  +G +LF R   G   T  G 
Sbjct: 4   WDDFRLVKAIAETRSLAGAAEVLGVNHSTVFRRLGALEALLGARLFERARTGYAPTVTGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R+   +  ++ + +  +    ++PSG+LR+ T   L  +LL      F   YP+I++
Sbjct: 64  ELVRLAERMGEEITSIERRITGRDLRPSGELRVTTNDTLLVHLLTPVFASFRAAYPEIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++I+ N+ ++++   AD A+R   +P    +L+ R++ +I    Y A            +
Sbjct: 124 EIIVSNQTLNLTKRDADVAVRASDRP--GDALVGRRVASIAWGVYGAAGGPDT--RAFEL 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             + +HN + F + I   ++   WL       GE RI   +VN+ L + Q    G G+A+
Sbjct: 180 AHMRQHNWVGFAEPI-GAIKAAKWL---KERAGEDRI-VYRVNTLLGLAQAAAAGMGLAV 234

Query: 244 LPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +I    P L R+   D           +P+ +K T +++AF +++
Sbjct: 235 LPCFIGAATPGLTRLQALDAEIDGSLWLLTHPD-IKQTARVRAFMDYV 281


>gi|52426171|ref|YP_089308.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308223|gb|AAU38723.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 305

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 116/248 (46%), Gaps = 12/248 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  V   GS +  A + +LS S +SR I  LE + G  LFYR+ R +T TE G  L 
Sbjct: 11  LKLFLQVLELGSLSEVARRENLSASMLSRLIKQLEDDWGAALFYRNTRAITPTETGLLLA 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  + +  +  +   + + +G +RI   +  GQ  +  +L E    YP++ + L+
Sbjct: 71  EYARQIVSQFQAAEQAITAQTAEIAGTVRINAPVFFGQLHIIPHLAELQARYPNLIVNLV 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  ID   D  D   RL  P+  SSL  R L   H    A+P YL+    P    +L 
Sbjct: 131 QTDDYIDPFTDSTDIIFRL-APLNDSSLKVRILAQQHFCLAASPSYLQKYGTPKIPADLA 189

Query: 188 KHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           KH+ + +    G L     E  NW A        P+I+ L  N+  +I   CV G GIAL
Sbjct: 190 KHHALLYKGKTGTLRWLLQEGENWQAC------SPKIA-LTSNNGNAIATACVQGMGIAL 242

Query: 244 LPDYIVKD 251
           L ++   D
Sbjct: 243 LANWAASD 250


>gi|170696516|ref|ZP_02887640.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138563|gb|EDT06767.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 306

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 144/302 (47%), Gaps = 35/302 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L L+Q ++SRQI  LE      LF RHA+GLTLT +G  
Sbjct: 17  NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEDYYKFPLFKRHAKGLTLTAEGEL 76

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E + ++E  +I L+ +  +    L++ T +      +   +  F   YPD+ +Q
Sbjct: 77  LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQTEYPDLHVQ 131

Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +      D+D  ++  D AI         +QS  L + +L  +      AP  LK+  +P
Sbjct: 132 ITTTWQHDVDFQLEPFDAAIIYGSSPGADVQSVPLFEERLTPV-----CAPDLLKD--KP 184

Query: 181 L-SIQELDKHNLITFGDLIPKCMEDFN-WLATV-------DRPIGE---PRISCLQVNSY 228
           L S+ +L +H L+       +   D+  WLA V        R I     P    L + + 
Sbjct: 185 LASVADLARHTLLHPT----RDHRDWKMWLARVAEADPADARAIDAEHGPSFDTLDMATN 240

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            ++  + V  S +AL+ + +      LVR  + V+   +  YF YP+++ +  KL  FR+
Sbjct: 241 AALQGFGVAISDLALIDEDVAAR--RLVRPFDTVLKTGWRYYFVYPDSVAHQHKLSLFRD 298

Query: 289 FI 290
           +I
Sbjct: 299 WI 300


>gi|161519952|ref|YP_001583379.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353871|ref|YP_001949498.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344002|gb|ABX17087.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337893|dbj|BAG46962.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 304

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 138/292 (47%), Gaps = 19/292 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  +G+F  AAE + ++   +SR I+ LE  + ++LF R  R ++LTE+G + +  
Sbjct: 14  VFAAVVDAGTFVGAAEVIGMTPPGVSRAIARLEKRLNVRLFNRTTRSVSLTEEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE         +    GKLRI     + + +L   L  F+  +P+++I+ I  
Sbjct: 74  VMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRTVLGQPLDAFMDTHPELEIEFIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187
           +   D+ MD  D A+R  +P ++S+LI RKL+   +   AAP Y+     P   ++L+  
Sbjct: 134 DSLGDLVMDGFDLAVRFGEP-KASTLIARKLLDSRIVTVAAPSYVARWGRPAKPEDLEGR 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242
           +H  + F +  P+  + F W     R     RI       L VN   +++  C+ GSGIA
Sbjct: 193 RHRCLEFRN--PETGKPFQWEFHRKR----KRIVVNTQGRLTVNDPGALLNACLAGSGIA 246

Query: 243 ----LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               L  + ++ D   L+ +  + +   + +Y  Y        K +AF +F+
Sbjct: 247 QMLLLGAEPLIADG-RLINLFPEWVDERYPLYVYYASRHHVPAKTRAFLDFV 297


>gi|300716897|ref|YP_003741700.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299062733|emb|CAX59853.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 294

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 125/260 (48%), Gaps = 5/260 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS ISR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAAQRLGLAQSGISRSVRELEERLGVQLLVRTTRRLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++     +  L +    L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYKTAETGFDALNSGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAIFQQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  IRL   +    +  R    + M   A P + +    P + 
Sbjct: 126 LELISESRFVDIIAERFDAGIRLGPEVGQGMIAVRITPDMEMAIVATPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I +  L    +  +       +    P+      +SY+   +    G G+A 
Sbjct: 186 EDLVAHPCIAY-QLADGSVYAWELNQQAKKITHRPQGQWAFSDSYME-AEAARRGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIME 260
           +P+ +V D+     LVR+++
Sbjct: 244 VPEELVSDDLQRGRLVRVLQ 263


>gi|291617153|ref|YP_003519895.1| YafC [Pantoea ananatis LMG 20103]
 gi|291152183|gb|ADD76767.1| YafC [Pantoea ananatis LMG 20103]
          Length = 287

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 16/248 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            R    VA   SF  AA+ + L+ S++++ I  LE ++ ++LF R  R +T+TE+G    
Sbjct: 11  FRAVIKVAEKQSFKLAAQSMGLTPSAVAKSIQRLEEQLAVQLFIRSTRSVTITEKGRLFL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +LE  + EL +    P+G L++   +     L   +L  F   +PDIQ+ + 
Sbjct: 71  ERCRHVMSELEAAEAELNQGKHSPAGLLKVG--LPDASELFTESLFAFTEAFPDIQLDID 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  +  D  IR   P+  S L  RKL   +    A+P YL+   EP  I EL+
Sbjct: 129 FSDRFVDIIGEGFDAVIRTGAPVD-SRLKYRKLNDFNWMYVASPEYLQTMNEPTEIHELE 187

Query: 188 KHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+     L   G L P       W  +VD        + +   S   ++   V G GIA
Sbjct: 188 YHHCLRQRLSHTGRLAP-------WFRSVDDEYTHAPATLISSKSAF-LIDLAVRGKGIA 239

Query: 243 LLPDYIVK 250
           +LP   +K
Sbjct: 240 MLPSLSIK 247


>gi|260568564|ref|ZP_05839033.1| LysR substrate binding domain-containing protein [Brucella suis bv.
           4 str. 40]
 gi|260155229|gb|EEW90310.1| LysR substrate binding domain-containing protein [Brucella suis bv.
           4 str. 40]
          Length = 297

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE G   
Sbjct: 6   RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+I + +
Sbjct: 66  YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P   ++L
Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPKLIARVGKPQRPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I   D   +   ++++       +  P    +++NS ++     + G G  +LP 
Sbjct: 185 TDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCMLPA 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +I +D      L+  +++ I     +Y  YP       K++A  +F+
Sbjct: 243 FIAEDEIEQGRLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289


>gi|167619006|ref|ZP_02387637.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 294

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 134/288 (46%), Gaps = 13/288 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  VAR G+ + AA +L +  +++ R+++ LETE+  +L  R AR  TLT  
Sbjct: 2   FDWENLRHFLAVARVGTLSGAARELGVDHATVGRRVTMLETELQTRLVERFARHCTLTGV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++  + S +       +  +Q    + +G + ++    L  N        F   YP I
Sbjct: 62  GRRMFEIASTMEAGAFAIERTVQAERSQLTGMVVVSAPPVLVTNFFAKETTAFRERYPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L    + + +S   AD A+RL +P ++ +++ R++  +    YAA  Y      P  
Sbjct: 122 QLALSGQAQSVSLSRREADVAVRLVRPKEADNVV-RRIGAMEFALYAARRY------PY- 173

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +QE  +   + + D     M    WL  V    G+  I+C ++    S       G+GI 
Sbjct: 174 LQEPARWEFVGYDDPFDD-MPQQRWLKKV---AGKRAIAC-RLGDITSQYAATRAGAGIG 228

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP ++   + +LV +  D    +  ++      LK +  ++A  +FI
Sbjct: 229 MLPRFLPAASDDLVELDVDAEPFARDIWLVVHRQLKASPPIRAVMDFI 276


>gi|325522808|gb|EGD01283.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 320

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 140/293 (47%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+        +SV P G+LR+ +    G   +   + ++   + D+ +++
Sbjct: 66  YERLVQALSELDEAGQAGGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAERFSDVTVEI 125

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +
Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHILLVASPAYLDKHGTPETIAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244
           L  HN +             N  A   R      +S   + ++L  ++  VL G+GIALL
Sbjct: 186 LAHHNYLRRDSNATMLDSMLNDAAAASRVT----LSGNLIVNHLEGLRAAVLGGAGIALL 241

Query: 245 PDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              +V D+     LV ++ D I P    +Y  Y      + K+++F +F+  +
Sbjct: 242 GTEVVGDDIESGRLVPVLIDAIPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|213052821|ref|ZP_03345699.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 299

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 124/279 (44%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 7   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 67  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYPGIALELC 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 127 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 186 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           SGI   P   V++      L+ I+         V   YP
Sbjct: 236 SGIIQTPRIAVREALRAGALIEILPQYRAAPLPVTLHYP 274


>gi|162148552|ref|YP_001603013.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787129|emb|CAP56719.1| putative transcriptional Regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 294

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 129/290 (44%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F  V  +GSF+ AA QL + Q ++S+ ++ LE  + + L  R   GLT TE G 
Sbjct: 4   YQAMTTFVRVLETGSFSAAARQLGVGQPAVSKTVAQLEARLQVSLLIRTTHGLTPTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        + +  ++  + +S+  SG+LR++      +  +   L  FL  +P + +
Sbjct: 64  NFYERARNAIQEADEAELAAKGASIGLSGRLRVSAATTFSRLHVIPKLPAFLAAHPQLDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +LD++ ID+  +  D ++R+   +  S+ + RK+ T      A P YL     P    
Sbjct: 124 DFLLDDRMIDLVAEGVDISLRM-GALSDSTAVVRKVATGRRSVIATPAYLARAGVPRHPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ + +  L P       W  T D       +S  L+V++   +    +   G+ +
Sbjct: 183 DLANHDTVIYSQL-PSV-----WSFTRDGAAVSVSVSGRLRVSAAEGLRAAILADMGLTI 236

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             D++     +   +VR++E    P   ++  +P     T K + F  F+
Sbjct: 237 TSDWMFAPELERGAVVRVLEGWSLPPIDLWAVFPAGRMMTAKARQFAGFV 286


>gi|89110492|ref|AP_004272.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|170083032|ref|YP_001732352.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|194435605|ref|ZP_03067708.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|254038699|ref|ZP_04872755.1| transcriptional regulator [Escherichia sp. 1_1_43]
 gi|256025754|ref|ZP_05439619.1| DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B]
 gi|300950858|ref|ZP_07164740.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300955004|ref|ZP_07167414.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|301028223|ref|ZP_07191492.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|466658|gb|AAB18497.1| unnamed protein product [Escherichia coli str. K-12 substr. MG1655]
 gi|85676523|dbj|BAE77773.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|169890867|gb|ACB04574.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|194425148|gb|EDX41132.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|226839205|gb|EEH71228.1| transcriptional regulator [Escherichia sp. 1_1_43]
 gi|260447464|gb|ACX37886.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|299878709|gb|EFI86920.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|300318046|gb|EFJ67830.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300449834|gb|EFK13454.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|309703927|emb|CBJ03268.1| LysR-family transcriptional regulator [Escherichia coli ETEC
           H10407]
 gi|315138097|dbj|BAJ45256.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           DH1]
 gi|323959452|gb|EGB55109.1| LysR substrate binding domain-containing protein [Escherichia coli
           H489]
 gi|323971379|gb|EGB66618.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
          Length = 323

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|320182581|gb|EFW57471.1| LysR family transcriptional regulator YhjC [Shigella boydii ATCC
           9905]
          Length = 323

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|300719020|ref|YP_003743823.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299064856|emb|CAX61976.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 292

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  L  F  + R GS + AA++LH+  +++SR+I+ LE  +G++L  R  R   LTEQ
Sbjct: 1   MDWQDLHYFLALVRRGSMSAAAKELHVDHATVSRRIAALERSLGLRLTERLPRRTALTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +  V  E+    +  +I+    S  P+  +R++ +  +   L+   + +F   +P+I
Sbjct: 61  GKVIASVAEEMNRVSDRVKIQATSLSAAPAAVIRVSASPAVAALLIAPAVADFTQTHPNI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L   +  + ++   AD A+RL +P +   L+ R++ T+    YA+P +    R P S
Sbjct: 121 SLSLSGASHQVQLNKGEADIAVRLTRP-EDPDLLTRRIGTMRFGLYASPSW--QDRPPES 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L     + +       +    WL ++   +   RI   + +  ++  Q    G G+ 
Sbjct: 178 WLFLGYETSLDY-------VTQQKWLESL---LNGRRI-IFRASDLMAQQQAARSGLGVV 226

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLK 284
            LP ++  ++ +L+++  D   P  +++   YPE  ++   ++
Sbjct: 227 TLPCFMGDNDSSLIKLAVDSPPPGRSMWLVAYPEYRRDPSAVR 269


>gi|296102449|ref|YP_003612595.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056908|gb|ADF61646.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 313

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 114/256 (44%), Gaps = 15/256 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +   L++F  V  + +F+  A +  LS S +SR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   SMNLRSLKIFIAVFEAENFSVVARREGLSASQVSRIIHQLEDALGQQLFYRNTRAVIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   E+    E  + EL   S +PSG +RI   +  GQ  +   L +    YP 
Sbjct: 66  SGHLFIRYAREMMTSFEEARRELDARSTEPSGTIRINAPVFFGQRHIAPGLPDLTARYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L +  ID   + AD   R+   +  S+   R       H  A+P YL+    P 
Sbjct: 126 LNIELTLTDDFIDPHKNAADVIFRI-GVLTDSTFHARIFGQQRYHLAASPDYLRQHGAPQ 184

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYC 235
              +L  H  + + G   P       WL    R  GE     P +  +  N+  S++   
Sbjct: 185 GPDDLAHHKCLVYRGSSGPN-----RWLL---RGAGEEWVHYPVMPLMTSNNAESLLAAA 236

Query: 236 VLGSGIALLPDYIVKD 251
           + G GI L PD+++ D
Sbjct: 237 LGGMGIVLFPDWLIGD 252


>gi|206576853|ref|YP_002238916.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|290509881|ref|ZP_06549252.1| transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206565911|gb|ACI07687.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|289779275|gb|EFD87272.1| transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 294

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 126/264 (47%), Gaps = 13/264 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+      +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKHRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   + S  +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIIAERFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L  H  I   FGD        + W   VD  +    P+      +SY+   +   LG 
Sbjct: 186 ADLVAHPCIAYQFGD-----GSLYAWELNVDGKKITHPPQGQWAFADSYME-AKAARLGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIME 260
           G+A +P+ ++ D+     L+R+++
Sbjct: 240 GLAYVPEELITDDLAQGTLIRVLQ 263


>gi|269102879|ref|ZP_06155576.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162777|gb|EEZ41273.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 300

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 8/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE   +++S +S++IS LE+E+GI+L YR  R LT+TE G  
Sbjct: 5   DDLVLFTQVIEHGSFSKVAELNSITKSVVSKRISKLESELGIQLIYRTTRKLTITEAGEV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +    ++    +   S   SG ++++     G+ LL  ++ EF   +P + + 
Sbjct: 65  LYHRAKSISQVAQSAFDAVTGYSEALSGTIKMSVPTISGELLLAESVSEFCKKHPGLTVN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN  +D+     D  IR    ++ SSLI R +        A+P YL     P + ++
Sbjct: 125 MSLDNHFVDLVAGNFDLVIRTGY-LEDSSLIARHIFNSRWVLCASPEYLAQHGIPNTPKD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +HN + +     +    F+W    +  +   R++     ++  ++ +  + G+GIA L
Sbjct: 184 LLRHNCLGYNH---QASGSFDWQFIRNDEVYTLRVAGNFSSDNAAALKKVALAGNGIAYL 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P  +V D   N  LV I+ +       +Y  YP   K   +++A 
Sbjct: 241 PTCLVYDELHNEKLVEILSEHAGKVVGIYAVYPYTKKPAKRIQAL 285


>gi|242237911|ref|YP_002986092.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242129968|gb|ACS84270.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 297

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 10/243 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F     SGSF  A+ +L +S S++ + ++ LE+ +G++L  R  R L+LT++G   +  
Sbjct: 12  AFVKAVESGSFASASARLGISASAVGKSVARLESTLGVRLLNRSTRQLSLTDEGQLFYER 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   LE TQ  L + +  P+G+LRI+    +G  +L   L +F+  YPDI++ L   
Sbjct: 72  ARRIAVDLEETQFALAQLTGNPAGRLRISLPA-IGYRMLLPCLPQFVSHYPDIELDLDFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIR    ++ S L  R+L +  +   AAP YL+    P + Q+L +H
Sbjct: 131 DRLVDVIGEGVDVAIR-SGTLEDSQLRSRRLGSYRLLLVAAPDYLQRYGAPTTPQQLSQH 189

Query: 190 NLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDY 247
             + +     +  +   W    D P +    +S   V S L   +   + G GIA +PD+
Sbjct: 190 RCLHY--RFSRTGQLMQW----DIPGVAMAALSEKLVFSNLEAQLSATIQGLGIAYVPDF 243

Query: 248 IVK 250
            V+
Sbjct: 244 AVR 246


>gi|21233148|ref|NP_639065.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770088|ref|YP_244850.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114995|gb|AAM42977.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575420|gb|AAY50830.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 310

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 137/306 (44%), Gaps = 26/306 (8%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D +D ++ F  V  SGSFT AA+ L +S++++++ +  LE  + + L  R  R + +
Sbjct: 1   MAMDRFDAMQAFARVVESGSFTKAADTLQISRATVTQLVQQLEARLRVTLLNRTTRRVAV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G+  +     +   ++  +  L  +S  P G+LR+     L + +L   L +F   Y
Sbjct: 61  TADGAAYYERVVRLLADMDDAETSLSVASSVPRGRLRVDVPSPLARLILMPALPDFHARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDIQ+ +   ++ +D+  +  DC +R    I   SL+ R +  +    YAAP YL     
Sbjct: 121 PDIQLHMGASDRRVDLIGEQIDCVVR-GGTITDQSLVARHVGDLQAGVYAAPGYLARLGM 179

Query: 180 PLSIQELD--KHNLITF---GDLIPKCMEDFNWLATVDRPI------GEPRISCLQVNSY 228
           P   +EL+   H  + F   GD +P       W   + R        G   ++    N+Y
Sbjct: 180 PAHPRELEDTAHRTVGFMRWGDGVP-------WPLVMQRDGEHVQVHGRYVVASDDGNAY 232

Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           L+     + G G+  LP Y+ +       L+ +  D       +   +P     + KL+ 
Sbjct: 233 LAA---GLAGMGVLWLPQYMARAPLSRGELLPVFADWQLDPMPLSIAFPPNRHVSAKLRV 289

Query: 286 FRNFIF 291
           F +++ 
Sbjct: 290 FIDWVI 295


>gi|33601728|ref|NP_889288.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33576165|emb|CAE33244.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 308

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 134/293 (45%), Gaps = 12/293 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F    ++GSFT AA  L +++S++ + ++ LE  +G++L +R  R L +T +G  +   
Sbjct: 11  AFVSAVKAGSFTSAAATLGVTRSAVGKSVARLEARLGVRLLHRTTRKLNVTGEGLVVFER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S++   LE     + +   KP+G LR+   +  GQ  +   L  ++  +P+IQ  +   
Sbjct: 71  WSQILEDLEEVDATMAQRRGKPAGILRLTAPLSFGQRHILPILNAYVTNWPEIQADVWFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+  +  D A+R+      + ++ R +        AAP YL     P +  +L  H
Sbjct: 131 DHYVDLIEEGIDVAVRIGGVKDDARILSRTIGGQQFVTCAAPGYLAKKGVPSTPADLAGH 190

Query: 190 NLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + I F      +P  +   + +   D P        + ++S  ++ +  + G G+  LP 
Sbjct: 191 DTIFFLSGQRPMPWRLGQGDAIEVCDGP------GRMNIDSSEALREAALSGFGLIHLPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           YI   +    +LV ++E    P+  +   YP     + + +AF + +  + RD
Sbjct: 245 YITGKDLQRGDLVEVLEAYRPPADPIRLIYPSKRHLSPRTRAFIDLLIERWRD 297


>gi|330820400|ref|YP_004349262.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327372395|gb|AEA63750.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 305

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 134/300 (44%), Gaps = 21/300 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF  AA  L +S S++S  +  LE  +G++LF R  R + LTE G  L
Sbjct: 8   ELTAFVAIAEQRSFRAAARALAVSPSALSHSMRSLEARLGVRLFNRTTRSVALTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R        LE    E+  +  +P+G +RI  +    + L++  L EFL  YPDI ++ 
Sbjct: 68  LRRVGPALSDLENAVDEVATAQNRPTGSVRINASETSTRILIRDVLPEFLQRYPDIHVEF 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + + + IDI  D  D  IR+   +    +  R    +   A A+P YL     P    +L
Sbjct: 128 VTETRLIDIVADGFDAGIRVFDDVPRDMIAVRFGPDMRFVAVASPDYLARHPAPTRPADL 187

Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  I +    G +     +     +++D  +  P    + + +  S+++  + G G+A
Sbjct: 188 MQHRCIRYRFESGAMFRWDFQSNGKTSSLD--VEGP----MTLGNLNSMIEAALAGIGVA 241

Query: 243 LLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             P+ +V +   +  LV ++ D  V  P   +Y  YP        L+ F   +    RDW
Sbjct: 242 WAPESLVSEHLASGRLVALLRDWSVSLPGLALY--YPANRHPPAPLRLFVQAV----RDW 295


>gi|317405133|gb|EFV85476.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 354

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 146/291 (50%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  V  + SFT AA+ L L +++++  I  LE  +G++L  R  R + LT  G+
Sbjct: 4   FQAMQVFVRVVDANSFTRAADSLSLPRTTVTTIIQNLERLLGVRLLNRTTRRIGLTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E T+   QE++++  G+LRI     +G+ +L  +L +F   YPD+++
Sbjct: 64  GYYQHCVRILADVEETEACFQEAALRLKGRLRIDVPTCIGRLILIPSLCDFHDKYPDVEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +D+  +  DC IR    ++ SSL+ R++ T+     A+P Y+     P +I+
Sbjct: 124 VLGIGDRPVDMVQEAVDCVIRAGD-LEDSSLVARRIGTLQTVTCASPTYVARHGMPQTIE 182

Query: 185 ELDKHNLI-TFGDLIPK-CMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           EL  H+ +  F     + C  DF     +D    E  +   + VN   + +   + G G+
Sbjct: 183 ELRNHHAVHCFSSRTGRNCAWDFK----IDGKHQEVDMRGTVAVNEAGAYLDCGLKGFGL 238

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              P Y+      +  L+ ++      +  +   YP++ + + K++AF ++
Sbjct: 239 IQTPRYMALPYLQSGELIEVLPQWKPSATAISVLYPQSRQLSPKVRAFADW 289


>gi|239995733|ref|ZP_04716257.1| probable transcriptional regulator, LysR family protein
           [Alteromonas macleodii ATCC 27126]
          Length = 301

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 133/286 (46%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F VVA  GSFT AAE+L  S   +S+ ++ LE ++  +LF R  R + LTE G +  
Sbjct: 7   LKTFCVVANEGSFTKAAEKLDTSNQLVSKYVAELEKQLDTRLFNRTTRKIHLTEAGQQCL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  + +   +   + +L   + +  G L ++  +      L   L  F   +P + I L 
Sbjct: 67  QHANHILESVTDMESQLGLLNTEAKGVLHVSAPVSFSTLHLASALSAFQQAHPHVSINLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ ID+  +  D AIR    + +SSL+ +K+ TI +   A+P YL+    P    EL 
Sbjct: 127 LNDRKIDVIDEGFDVAIRAGH-LANSSLVAKKITTIKLALCASPAYLEKYGTPQHPAELK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             + + +  +      D + L    +   +     L  N+   +      G G  L P +
Sbjct: 186 PEHYLEYSYV--NYDNDKSALIAALKANAQTVTPKLTANNGEVLTNVAKQGEGYVLQPTF 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +   N  LV I++D +  + ++Y  YP     + KL+ F +F+
Sbjct: 244 IAGEALKNGELVSILDDFVPQAISLYAVYPHRKLISNKLRVFIDFL 289


>gi|207744826|ref|YP_002261218.1| hypothetical protein RSIPO_03040 [Ralstonia solanacearum IPO1609]
 gi|206596236|emb|CAQ63163.1| hypothetical protein RSIPO_03040 [Ralstonia solanacearum IPO1609]
          Length = 291

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 132/300 (44%), Gaps = 27/300 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +G+FT AA QL +S   + + +  LET +G +L  R  R  +LT+ G   +
Sbjct: 1   METFVAVVDTGNFTEAAVQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTDAGRVFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  ++   +  ++    +PSG LR++     G  ++      F   +P ++++L 
Sbjct: 61  DDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQVRVELD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D++ +  D A+R+  P+  + L+ + L    M   A+P YL    +P +  +L 
Sbjct: 121 LSNRMVDLADEGFDLAVRI-GPLGDADLVAKPLCAYRMAICASPDYLARHGQPETPADLP 179

Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIG---EPRISCLQVNSYLSIMQYCVL 237
            H          +C+    W       L+  D P     +P  SC   N    +    + 
Sbjct: 180 AH----------RCLSHMVWNRRNAWQLSGWDGPTSWRDDPAFSC---NDGHGLRMAAIA 226

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+G+ L P+ +V ++     LVR+++        ++  Y +  +   KL  F + +   A
Sbjct: 227 GAGLLLQPEVLVAEDLASGRLVRVLQPYAPEPRPIHLVYRQDRRPLPKLTGFVDHLLQHA 286


>gi|161616386|ref|YP_001590351.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|213160819|ref|ZP_03346529.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213428316|ref|ZP_03361066.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213586678|ref|ZP_03368504.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|289829154|ref|ZP_06546809.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|161365750|gb|ABX69518.1| hypothetical protein SPAB_04195 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|312914395|dbj|BAJ38369.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321225211|gb|EFX50270.1| Transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322614508|gb|EFY11438.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618270|gb|EFY15161.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625983|gb|EFY22797.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626753|gb|EFY23550.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631321|gb|EFY28081.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635412|gb|EFY32126.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643412|gb|EFY39976.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647019|gb|EFY43520.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649748|gb|EFY46175.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655578|gb|EFY51884.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658392|gb|EFY54657.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664384|gb|EFY60580.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667396|gb|EFY63558.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674644|gb|EFY70736.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675725|gb|EFY71798.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682361|gb|EFY78384.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684774|gb|EFY80775.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323196148|gb|EFZ81308.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196714|gb|EFZ81859.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204351|gb|EFZ89360.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207699|gb|EFZ92646.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210011|gb|EFZ94916.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214274|gb|EFZ99027.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219048|gb|EGA03554.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225029|gb|EGA09282.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230381|gb|EGA14500.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233357|gb|EGA17451.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239394|gb|EGA23444.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242355|gb|EGA26381.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247291|gb|EGA31256.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250381|gb|EGA34265.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256829|gb|EGA40544.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263887|gb|EGA47406.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264092|gb|EGA47600.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271649|gb|EGA55068.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 303

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 4/247 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +        E         R I + R      N  ++++++   G+GIA +P  
Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPLM 236

Query: 248 IVKDNPN 254
            V D  N
Sbjct: 237 WVIDEIN 243


>gi|89900015|ref|YP_522486.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344752|gb|ABD68955.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 309

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 14/301 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F     +G FT AA ++ L+ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 6   EMTAFVRAVETGGFTAAAREIGLTPSALSKLVTRLEDRLGARLLQRTTRRLQLTSEGEAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   ++  + E+ ++ + P G LR+      G + L   +  F  LYPD+Q+ +
Sbjct: 66  YARARPILLAMDEAEAEVSQAGLSPRGLLRLQCGTAFGMHQLARTIPHFQALYPDVQLDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++      +  D  IR   P+  SS++ R++ T+     AAP YL     P +  +L
Sbjct: 126 TISDRPPADMKEGIDLTIRT-GPLDDSSMVARRICTLERVICAAPSYLALHGTPRTPDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN +   +L P       W    +  I    I   +  N+  +++Q  V G GI  L 
Sbjct: 185 QRHNCLWISNL-PALR---RWPFDTEDGIRVVHIGGNVVANNAETVLQLAVAGVGITRLT 240

Query: 246 DYIVK---DNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWK 298
           + IV        LV I+ D   + P   ++  YP       K++A  +F+  F K  D +
Sbjct: 241 NVIVSAAIARRELVPILTDWHHVEP-VPLFASYPSGRNLAPKVRAMVDFLVDFFKDSDQQ 299

Query: 299 F 299
           F
Sbjct: 300 F 300


>gi|82779555|ref|YP_405904.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|309787517|ref|ZP_07682129.1| uncharacterized HTH-type transcriptional regulator yhjC [Shigella
           dysenteriae 1617]
 gi|81243703|gb|ABB64413.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|308925095|gb|EFP70590.1| uncharacterized HTH-type transcriptional regulator yhjC [Shigella
           dysenteriae 1617]
          Length = 291

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 135/286 (47%), Gaps = 9/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   ++ 
Sbjct: 1   MFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYYQR 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L   
Sbjct: 61  AKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELSSH 120

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L  H
Sbjct: 121 DRPVDILHDGFDCVIR-TGALPEDGVIARPLGNLTMVNCASPHYLTRFGYPQSPDDLTSH 179

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P   V
Sbjct: 180 AIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRIAV 238

Query: 250 KDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
           ++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 239 REALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 282


>gi|262164661|ref|ZP_06032399.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|262027041|gb|EEY45708.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 295

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 124/280 (44%), Gaps = 17/280 (6%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSVKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+IQLI         +       R    + S S     L       YA+P YL+    P 
Sbjct: 121 IRIQLITTTPGQLPELHLDLFISREIDQLNSLSFKATPLFEHQAGFYASPSYLEKHGTPK 180

Query: 182 SIQELDKHNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++QEL +HN++ +G+      K  +      T +     P           ++      G
Sbjct: 181 TLQELTQHNVLCWGEQTYREVKTAQGKRVTLTGNFATTNPE----------ALFYAGKAG 230

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            G+ +    ++K+     NLVRI+ DV     TVY  YP+
Sbjct: 231 MGVIVTGHIMIKEELKQGNLVRILPDVTIDQATVYAYYPK 270


>gi|207738586|ref|YP_002256979.1| hypothetical protein RSIPO_03278 [Ralstonia solanacearum IPO1609]
 gi|206591954|emb|CAQ58860.1| hypothetical protein RSIPO_03278 [Ralstonia solanacearum IPO1609]
          Length = 298

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 19/212 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   G+F  AA +L L+ SSIS+ +  LE E+G+ L +R  R L+LTE G   
Sbjct: 6   RMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLTEAGRVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   + V H     Q ++     +P+G+LRI    +L    L   L++F+  +P + ++ 
Sbjct: 66  YEECANVVHAAARGQQKVAALRDEPAGELRITAPSELAHQHLVPALRDFIAAHPRLAVRF 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ID+     D A+R+ + ++ SSL+ R++        AAP YL+    P +    
Sbjct: 126 ELGDEKIDLVEHRVDLAVRIGE-LRDSSLVARQIAWFDELICAAPAYLERTGPPTT---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP 218
                       P+ + D +WL  +  P+GEP
Sbjct: 181 ------------PQALADLDWL--IFTPLGEP 198


>gi|191165306|ref|ZP_03027149.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|193061785|ref|ZP_03042882.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194428655|ref|ZP_03061192.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|218556071|ref|YP_002388984.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|218697230|ref|YP_002404897.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|256020868|ref|ZP_05434733.1| putative DNA-binding transcriptional regulator [Shigella sp. D9]
 gi|260846310|ref|YP_003224088.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|260857625|ref|YP_003231516.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|300815264|ref|ZP_07095489.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300822084|ref|ZP_07102227.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300907584|ref|ZP_07125220.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300916752|ref|ZP_07133463.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300922345|ref|ZP_07138467.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|301306827|ref|ZP_07212877.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|301326666|ref|ZP_07219993.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|307314351|ref|ZP_07593958.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|309796158|ref|ZP_07690569.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|331670352|ref|ZP_08371191.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331679598|ref|ZP_08380268.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332282082|ref|ZP_08394495.1| conserved hypothetical protein [Shigella sp. D9]
 gi|190904708|gb|EDV64414.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|192932575|gb|EDV85172.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194413238|gb|EDX29523.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|218353962|emb|CAV00420.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|218362839|emb|CAR00469.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|257756274|dbj|BAI27776.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|257761457|dbj|BAI32954.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|300400701|gb|EFJ84239.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300415974|gb|EFJ99284.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300421285|gb|EFK04596.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300525447|gb|EFK46516.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300532156|gb|EFK53218.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300837946|gb|EFK65706.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|300846670|gb|EFK74430.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|306906066|gb|EFN36586.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|308120219|gb|EFO57481.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|315062800|gb|ADT77127.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|315252578|gb|EFU32546.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|323376612|gb|ADX48880.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323944482|gb|EGB40555.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|324021177|gb|EGB90396.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
 gi|324116608|gb|EGC10525.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
 gi|331062414|gb|EGI34334.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331072770|gb|EGI44095.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332104434|gb|EGJ07780.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 323

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|163793590|ref|ZP_02187565.1| regulatory protein, LysR:LysR, substrate-binding [alpha
           proteobacterium BAL199]
 gi|159181392|gb|EDP65907.1| regulatory protein, LysR:LysR, substrate-binding [alpha
           proteobacterium BAL199]
          Length = 305

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 129/274 (47%), Gaps = 17/274 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A + SFT A  QL +S S+I + ++ LE  +G++LF+R  R + LT +G+   
Sbjct: 7   LNAFVQAADARSFTAAGRQLGVSSSAIGKAVARLEERLGVRLFHRSTRAIALTPEGALFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +  + E  ++E+ ++   P G+L +  ++ L   L+   +  F+  YP+I+++L 
Sbjct: 67  RRCRRILSEAEDAELEIAQTQGAPRGRLNV--SLPLAGILMMPAISAFMHAYPEIELELD 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  IR  + I  S L+ R L T  +    +P Y  +   P +  +L 
Sbjct: 125 FSDRLVDVIDEGFDAVIRAGE-IGDSRLMSRTLGTFQLRLVGSPVYFASKGYPQNPDDLK 183

Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H  +     T G L    ++       +D P           N+   ++     G GIA
Sbjct: 184 QHACLQHRYATSGKLERWPLQHKGEALDLDLP------KTAVANTIDPLIHLAEQGLGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            LPD+ ++    N NLV +++D I  S     CY
Sbjct: 238 CLPDFAIRRQLANGNLVTVLDDHIQHSPARSECY 271


>gi|156932763|ref|YP_001436679.1| hypothetical protein ESA_00553 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531017|gb|ABU75843.1| hypothetical protein ESA_00553 [Cronobacter sakazakii ATCC BAA-894]
          Length = 301

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 145/311 (46%), Gaps = 43/311 (13%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V  + SFT AA  L  +++ +S  I  LE+E+G+ L  R  R LTLT+ G +L
Sbjct: 6   RLAMFVAVVDAKSFTGAAAALGQTKAVVSFNIRQLESELGVTLLLRSTRRLTLTDAGERL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++ +  +    +    ++Q S    SG+LR+ TT +   +++   L  F   +P ++I+ 
Sbjct: 66  YQRSLVLLKDADALLDDVQASHDGFSGELRVTTTPEYATHVVGPALAAFSRAHPALRIRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++  D+  +  D AIRL   +Q S+     +    +   A+P +L+  R P+S    
Sbjct: 126 FSSSQHADLISERVDVAIRL-GTLQDSAYRAALISRFDIFPVASPAWLE--RHPIS---- 178

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP------------------RISCLQVNSY 228
                       P  +   +WL  V   +  P                  R   +  +  
Sbjct: 179 -----------TPGALSQADWL--VHTRLASPLRWELTGPHNETLWFEITRPPVIAADGA 225

Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            ++M + + G G+ALLP ++VK   +   LVR++     P+  VY  YP+A   +GK++ 
Sbjct: 226 GALMTFALEGCGVALLPAWLVKTALEEGRLVRLLPAYRFPAQGVYAVYPDARHVSGKVRG 285

Query: 286 FRNFIFLKARD 296
           F +  FL+AR+
Sbjct: 286 FID--FLRARE 294


>gi|15887611|ref|NP_353292.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15155154|gb|AAK86077.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 296

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 134/298 (44%), Gaps = 19/298 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   VA   SF  AA +L ++ S++S  +S LE  +G++L +R  R ++ TE+G +L
Sbjct: 8   QLAVLAAVAEGRSFRKAAAELAIAPSAVSHAVSSLEASLGLRLLHRTTRSVSPTEEGRQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     ++     L E   +P+G LRI       ++L+   L EFL LYPDI +++
Sbjct: 68  LETLGPALADIDAVIETLAEHGGRPAGPLRITLPRLAAEDLIVPRLGEFLRLYPDISLEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             D++  DI     D  +RL + + +  +  +           AP Y      P   ++L
Sbjct: 128 STDDRFEDIVAKGFDAGLRLGEHLDADMIAVKASGAWRGAIVGAPAYFAENAPPREPRDL 187

Query: 187 DKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGS 239
            +H  I       LI      + W    +   G+P +  +Q    LS    I +  + G+
Sbjct: 188 IRHRCIRRRFSSGLI------YRWELEKN---GKPLVVDVQGPLILSDQSLIRRAAIDGA 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+A + +  V+++     L+R++ED   P    Y  YP   +    L+AF +F   + 
Sbjct: 239 GLAFVFEQRVEEDIAEGRLIRVLEDWCAPFDGFYIYYPSRRQMRPALRAFVDFFRFRG 296


>gi|323491566|ref|ZP_08096745.1| LysR family substrate binding transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
 gi|323314142|gb|EGA67227.1| LysR family substrate binding transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
          Length = 302

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 130/289 (44%), Gaps = 9/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++  +F  VA+  SF+ AAE L +S+S +S QI  LE E+   L  R  R + LT  G 
Sbjct: 8   FERYALFGEVAKQLSFSKAAENLGISRSYLSSQIHQLEQELETSLLIRSTRSVRLTAAGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           K+      +   +   + EL  +     G LRI          L     +F   YPDI+ 
Sbjct: 68  KILTKMQGINESILQLEKELDHTKSTVGGLLRITAPTIFSHRYLIEICHQFQQQYPDIEF 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +     D++    D AIR        ++I +KL+       A+P YL     P   Q
Sbjct: 128 DLDIGYTREDLTKSNFDLAIRATN-TPPENMIAKKLIPYQHVCCASPDYLATHGIPTHPQ 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN ++  +L       + +  T ++ I       + +N  L I+   + G G+  +
Sbjct: 187 QLTQHNCLSDPNL-----RHWQFTNTSNQMIEVATDGNMLINDNLLILDAALKGKGVIKM 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y+V+   DN  L +I+ D      ++Y  YP  L+ + KL AF +F+
Sbjct: 242 PCYLVQPALDNGQLQQILSDYQMTQSSIYLIYPPQLRRSTKLSAFVDFV 290


>gi|293416966|ref|ZP_06659603.1| LysR family transcriptional regulator YhjC [Escherichia coli B185]
 gi|291431542|gb|EFF04527.1| LysR family transcriptional regulator YhjC [Escherichia coli B185]
          Length = 323

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLPMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|238913553|ref|ZP_04657390.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 307

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 4/247 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +        E         R I + R      N  ++++++   G+GIA +P  
Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPLM 236

Query: 248 IVKDNPN 254
            V D  N
Sbjct: 237 WVIDEIN 243


>gi|209516343|ref|ZP_03265200.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503279|gb|EEA03278.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 314

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 135/293 (46%), Gaps = 18/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  G F  AA +L  S +++SR I+ LET +G +L  R  R + LTE G +  
Sbjct: 7   IRIFVKVASDGGFASAARRLKFSVAAVSRAINQLETHLGSRLLNRTTRQVALTEAGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E+   L+  + E + ++  P+G+LR+      G  L+   + ++   + ++++ + 
Sbjct: 67  RRCEEILSSLDDAEAEARSATANPTGRLRVHALSSFGHQLVVPAILKYQQRFSELRVDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +     D+  D  D +I L   + SS L+  +L +I     A+P YL +   P + ++L 
Sbjct: 127 MSGTIPDMLEDGYDASIVLAPELPSSGLVSLRLGSIPGVVCASPRYLASHGVPKTPEDLR 186

Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +H  +    L         W       L+ V+  IG  R   L VN+  ++      G G
Sbjct: 187 EHQCL---QLTTSVFPFDKWVFGGAGELSPVN--IGSAR---LTVNAMEALEPAVAGGLG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP  I      +  LVR++    T    VY  YP       K++ F + +
Sbjct: 239 VAILPAGIALPGLRSGALVRLLRGYETQPVNVYALYPSRRFLDAKIRTFIDLL 291


>gi|78049384|ref|YP_365559.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037814|emb|CAJ25559.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 298

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 25/298 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA    F+ AA+ L  S +S++RQI+ LE  +G +L  R  R ++LT  GS 
Sbjct: 5   DAMRVFAAVAERSGFSAAADALDRSTASVTRQIAALEQRLGTRLLNRTTRRVSLTSAGSA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   L+  +  +   +++P+G LR+   +  G   L   L  F   YP +++ 
Sbjct: 65  YYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L ++ +D+  +  D AIR+ R+P  +  LI R+L  + + A A+P YL     P    
Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APMLIARQLGKVRILACASPAYLARAGTPRHPS 182

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236
           +L  H  + +     GD +               P G+  +     L+ N+   +    +
Sbjct: 183 DLAGHECLLYHYSPSGDEV-----------RFQGPEGDIDVRLRGGLRANNGHVLNAAAL 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G GI + PD++ + +     LVRI+ D       ++  Y        K+++F +++ 
Sbjct: 232 AGQGIVMQPDFLAEPHLAAGRLVRILPDYALDEIGIFAVYTSRSHLAPKVRSFIDYLI 289


>gi|114561957|ref|YP_749470.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333250|gb|ABI70632.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 299

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 136/301 (45%), Gaps = 27/301 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AAEQL LS+  +SR I  +E  + ++L +R  R ++LT QG +  
Sbjct: 7   IRSFVEVASCGSFTQAAEQLGLSRLQVSRHIKEVEQWLALRLLHRTTRRVSLTLQGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +      + +  G +RIA+ I LGQ+ L   ++ F   +P + IQL+
Sbjct: 67  NYCQRILSEVTAMESRANSHNNELVGSIRIASPIGLGQHKLYDVVEAFCQQHPQVNIQLL 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L +    +  D  D A+R   +P    SLI R+L+ I     A+P YL      LS  +L
Sbjct: 127 LSDNVSQLVNDRVDIALRYTHQP--DESLIARRLMHIDSVICASPDYLVKHSALLSANDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSG 240
            +HN +      P+      W       I E R   L V+  L      VL      G+G
Sbjct: 185 LQHNCLCHSSQ-PR------W-----EIIDESRTCLLDVSGNLQANDMGVLINAALRGNG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  LP  +     +   L+ ++ ++  P  T++  Y   L  + +    R FI   A  W
Sbjct: 233 IVCLPTDLANHYLEQGELLEVLPNITAPGKTLWAVY---LSRSYQQTVVRAFIDFTANAW 289

Query: 298 K 298
           +
Sbjct: 290 Q 290


>gi|170722339|ref|YP_001750027.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169760342|gb|ACA73658.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 309

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 145/289 (50%), Gaps = 12/289 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA +GSFT AAE++ L+ S++S+ ++ LE  + +KLF R  R L LT+ G+  ++ 
Sbjct: 12  VFICVAEAGSFTAAAERMSLTTSAVSKSVARLEQRLNMKLFARTTRRLALTDTGANYYQT 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   LE  ++++  +  +P G++RI      G+  +   L EF+  +  +   + L 
Sbjct: 72  CKQILASLEEAEMQMHSAQTEPCGRVRIDLPASYGKLRVLPLLIEFIAEHELLMPHITLT 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDK 188
           ++ +D      D  +R+  P      ++R+L+ I  H + AAP YL+    P + ++L +
Sbjct: 132 DRFVDPIEHDIDILVRIGGPQTWPQGVERRLIGIQQHIFCAAPGYLQRRGVPETERDLHE 191

Query: 189 HNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           H  + +    G + P      +   +  R +   RI+       L+++   + G G+A L
Sbjct: 192 HGCVLYGRTDGGVYPLHFPGAHASDSEQRVV-SGRIAIGNAEGQLAMV---LAGLGVAQL 247

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V+   D   LV+I+ ++ T    +   + ++ ++  K+ A  + I
Sbjct: 248 PSWLVQEHLDAGTLVQILPELSTIGLPINVAWLKSRQSLPKVGALVDVI 296


>gi|300703988|ref|YP_003745590.1| transcriptional regulator [Ralstonia solanacearum CFBP2957]
 gi|299071651|emb|CBJ42975.1| putative transcription regulator protein, HTH-type [Ralstonia
           solanacearum CFBP2957]
          Length = 306

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 132/298 (44%), Gaps = 15/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT
Sbjct: 1   MSNPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G      + ++   +E  Q   + S     G+LR+   + + + ++   L  FL  +P
Sbjct: 61  QDGQAFFERSQDLLADMEELQTMFRHSPQALRGRLRVDMPVGVARKIVIPALPAFLDAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L   ++ +D+  +  DC +R+   +  SSLI R L  +     A+P YL     P
Sbjct: 121 QLEIELSSTDRRVDLVREGFDCVLRIGA-LSDSSLIARPLGQLPQMNCASPAYLARYGMP 179

Query: 181 LSIQELDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235
            S+ +LD+H L+    T G  +P       W   VD R    P    L V++  S    C
Sbjct: 180 RSLDDLDQHRLVHYVQTLGTKVP------GWEYVVDGRAAYRPMQGVLTVSTAESYEAAC 233

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G G+   P   +        LV ++         V   YP       +++ F N++
Sbjct: 234 QAGLGLIQAPMSGLAPQVARGELVDVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMNWV 291


>gi|307725925|ref|YP_003909138.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586450|gb|ADN59847.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 326

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 135/292 (46%), Gaps = 23/292 (7%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           VA +G F+ AA++L ++ SS++R +  LE  +G  L  R  R ++LT+ G       S+V
Sbjct: 33  VADAGGFSKAAQRLGVATSSVTRLMDSLEASLGTALLTRTPRKVSLTDAGIAYVEQVSKV 92

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              L      + +S   P G LRIA     G+  L  +L  FL  +P + + +++ +  +
Sbjct: 93  LDDLAEADDSVFDSGASPVGALRIAVPSTYGRLCLAPHLAAFLAEHPRVFLDVVVSDHFV 152

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D++++  D A+R+    + ++LI RKL     H  A+  YL+    P +  EL  H  + 
Sbjct: 153 DLAVERIDVAVRIGPAERDANLIVRKLADNPRHVVASREYLRRHGTPRTPAELAGHECLR 212

Query: 194 F---GDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIALLPD 246
           F   G    + +    W    D   GEP+       L  NS   +++  + GSGIALLP 
Sbjct: 213 FAYGGGYRSRQV----WTFQRD---GEPQPVEVRGRLLSNSLDVLLEAALAGSGIALLPQ 265

Query: 247 YIVKDNPNLVRIMEDVITP--------SFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    +  R+M  +  P           VY  Y    + + K++A   F+
Sbjct: 266 WQVAAEVHAGRLMR-LFEPFDARPQAGDAVVYAAYLPNRRQSSKVRALLQFL 316


>gi|241518471|ref|YP_002979099.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862884|gb|ACS60548.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 311

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 10/290 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     + VF     +G F+ A  +L+LS+SS+ R ++ LE  + ++LF R  R  ++T
Sbjct: 1   MTISLSDIPVFVCAVDTGGFSEAGRRLNLSRSSVGRAVARLEAGLNVRLFDRTTRHQSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +        +L   +  L   S  P GKLR++  +  G+  +   L       P
Sbjct: 61  ADGQLFYEHCQRAMAELRAVEAALDSGSSAPRGKLRVSMPVLFGRMCVAPILTRLARENP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +D+  D  D AIR   P  ++    R++       YAAP YL+    P
Sbjct: 121 GLELELSFSDRKVDLLEDGFDLAIRNGSPGNAAGTRIRRVGHEETMLYAAPGYLERQGVP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLG 238
            +I ELD H+ +T+     +     +W   V+  + E  P +S L+ +   +I      G
Sbjct: 181 EAISELDAHDTVTYS----RAGRVQSWTLEVEGVVHEFNP-VSRLRFDDIDAIADAATEG 235

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            G+A LP ++VK   +   LV +M  +      V+  +P+      +++A
Sbjct: 236 FGLAWLPFWLVKKRVETGELVPVMRQMPPYVSEVWALWPDGAHLPTRVRA 285


>gi|187921078|ref|YP_001890110.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719516|gb|ACD20739.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 304

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 137/289 (47%), Gaps = 13/289 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  +G+F  AA  + +S   +SR I+ LE  + I+LF R  R ++LTE+G + +  
Sbjct: 14  VFAAVVDAGTFAAAAALMDMSPPGVSRAIARLEKRLKIRLFNRTTRAVSLTEEGRQFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  +E              GKLRI         LL   L  F+  +P+I+++ I  
Sbjct: 74  VMPHLRGMEEAAAAAAGGGAIVRGKLRINLDPVFSHILLGAKLDAFMDAHPEIELEFIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK- 188
           ++  D+ +D  D A+R  +P +SSSLI RKL+   +   A+P Y+ +   P   QEL + 
Sbjct: 134 DQLGDLIVDGFDLALRFGEP-RSSSLIARKLLDATIVTVASPLYIASRGRPTEPQELGRG 192

Query: 189 -HNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242
            H  + F +  P+  + ++W     R   I E     L VN   +++  C+ GSG+A   
Sbjct: 193 IHRCLEFRN--PETGKPYHWEFHRKRKKLIVETN-GRLTVNDPGALLNACLAGSGVAQML 249

Query: 243 -LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  +++++    LV +  D     F +Y  +P       + +AF +FI
Sbjct: 250 LLGAEHLIRQG-RLVNLFPDWADERFPLYAYHPSRHHVPARTRAFLDFI 297


>gi|330014644|ref|ZP_08307947.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328532840|gb|EGF59620.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 294

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 125/264 (47%), Gaps = 13/264 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+      +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI     D  +RL   + S  +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIIAQRFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L  H  I   FGD        + W   VD  +    P+      +SY+   +   LG 
Sbjct: 186 ADLVAHPCIAYQFGD-----GSLYAWELNVDGKKTPPPPQGQWAFADSYME-AKAARLGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIME 260
           G+A +P+ ++ D+     L+R+++
Sbjct: 240 GLAYVPEELITDDLAQGTLIRVLQ 263


>gi|237798868|ref|ZP_04587329.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021722|gb|EGI01779.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 297

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLLVAREQSFTKAATKLGVTPSALSHTLRALEERMGLRLLARTTRNVAPTEAGEQ 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q+
Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W    D      R++     NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           +PD + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 244 VPDSLAQPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289


>gi|27381641|ref|NP_773170.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27354809|dbj|BAC51795.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 298

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 133/285 (46%), Gaps = 6/285 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L  F  VA+  SFT AA +L + QS++S  I  LE ++GI+L  R  R + LTE G
Sbjct: 5   DFNDLLWFLTVAKERSFTKAAAKLGIGQSTLSHTIKRLEDQMGIRLLTRTTRSVGLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    ++E    +L     KPSG++R+  +    Q+++   L+  L  YPDI+
Sbjct: 65  ERLRLSMAPRIAEIEAEIADLMAFRDKPSGRIRMTVSEHALQSVVWPKLQPILKDYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L LDN   +I  D  D  +RL + ++   +  R      + A  +P Y      P   
Sbjct: 125 LELSLDNGFRNIVEDGFDAGVRLGESVEKDMVAVRIGPDWRLVAVGSPGYFAEHGVPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L +HN I     + +    + W    D      R+   L  N+  +     + G GIA
Sbjct: 185 HDLVRHNCINL--RLERAGGLYAWEFAKDGQELRVRVDGQLTFNTSYAQADAALKGYGIA 242

Query: 243 LLPDYIVKDN--PNLVRIMEDVITPSFTVYFC-YPEALKNTGKLK 284
            +P+ +V+ +     + ++ D  +P F  Y   YP   +N+   K
Sbjct: 243 YVPENVVQRHIMSGDLALVLDKWSPVFDGYHIYYPSRRQNSPAFK 287


>gi|134296657|ref|YP_001120392.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139814|gb|ABO55557.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 300

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 105/211 (49%), Gaps = 7/211 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD      + V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MGFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++  +S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYETVAPLLAGIEEAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP++ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+  Y+   
Sbjct: 121 RYPELSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETRVLTCASAAYIARH 179

Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW 207
            EPL  ++L D H  +   D  P     + W
Sbjct: 180 GEPLHPRDLADGHRCVLIRD--PVTGRPYEW 208


>gi|300718459|ref|YP_003743262.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299064295|emb|CAX61415.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 306

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 124/261 (47%), Gaps = 11/261 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+A  GSFT AAE+L +S++++S++I  LE   G+ L  R  R L LT  G 
Sbjct: 10  WIHLHWLTVLAEQGSFTRAAERLEVSKAAMSQKIKELEHLAGVPLVTRTTRSLRLTSAGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL     + + ++E +   +++S+    G +R+   +   +  L  ++  FL  +P +++
Sbjct: 70  KLVEELRQPFAQIEQSFFSVRDSAGPLRGLVRVTAPVAFARQQLVPHITAFLREHPQVRV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ + ++ +  D AIR    +  +  +   L T H    A+P YL     P + Q
Sbjct: 130 QLEVSDRLVSLASEGFDLAIRHSDTLPETH-VALPLCTTHAQVVASPAYLTQHGFPQTPQ 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGS 239
            L  H  + +    P+  E   W     R  GE  ++         N+  SI    + G 
Sbjct: 189 ALSDHQCLYY----PRGTEMPRW-TFASRQAGEESVTVNVSGPFATNNSESIRDAALDGL 243

Query: 240 GIALLPDYIVKDNPNLVRIME 260
           GIALLPD+  +   +  R++E
Sbjct: 244 GIALLPDFSARAALSEGRLVE 264


>gi|307730092|ref|YP_003907316.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584627|gb|ADN58025.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 334

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 134/299 (44%), Gaps = 26/299 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFLRVVEAGSFTAAAQSLNSTTGAMSRALSELEAHLRTRLLNRSTRRLALTTAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++T + E   +  +PSG LR+ +   +GQ+ +   +  +   YP++ ++L
Sbjct: 66  LKRCRQILADVDTAEEEASCAHERPSGALRMHSFASIGQHYVLPAISRYRAQYPEVTVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    AD +I     +  S L+   L T      A+P Y++    P +  +L
Sbjct: 126 TLSQRMPDLFEGSADVSIVGAATLPDSDLVSLPLGTTFSILCASPAYVRAHGTPQTPADL 185

Query: 187 DKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
             H  LI      P       W+  +D P G   ++    +QVN   S++     G GI 
Sbjct: 186 AHHECLILHTPAFPP----REWV--LDGPNGSETMAVDGPVQVNIAESLIAAIREGMGIG 239

Query: 243 LLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           ++P Y     ++D   LVR++        TVY  YP            R F+  K R W
Sbjct: 240 MVPLYAAIAGLRDG-TLVRVLPAFTLQKMTVYALYPS-----------RKFVDAKTRTW 286


>gi|50121309|ref|YP_050476.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611835|emb|CAG75284.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 310

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 139/300 (46%), Gaps = 18/300 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V ++GSF  A E    S+ ++SRQ+  LE  +G++L +R  R ++LT +G   +
Sbjct: 4   MTTFVAVVKAGSFVKAMESTGFSKPAVSRQVIELEKFLGVRLLHRTTRRISLTSEGETYY 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   EV   +E  + ++   + +  G+LRI    D G   L     +F+   P +++ ++
Sbjct: 64  QRCKEVLSVIEEAENQVCARANQAHGRLRIGVPQDFGVLQLTPLWAQFMDRNPKVELDIV 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++++D   +  D  +R+   +  S+L+   L T  +   A+P YL+    P    +LD
Sbjct: 124 LSDRNVDPVEEGYDLVVRIGN-LPDSTLVSSLLATTRLILCASPEYLRLRGTPTHPTDLD 182

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           KH +I +     G+    C E    +     P        L VNS  +     +   GI 
Sbjct: 183 KHVVIAYSYNASGNEWLFCKEKREQIKVSTHP-------RLNVNSGATCRLLAIESQGII 235

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDW 297
           L PD++V  +     LV I+ +    +  ++  YP  +    K++  R+F+   L+ + W
Sbjct: 236 LQPDFLVHSDIIKGKLVEIIPEWQAQTLEIHALYPTRILLPLKVQLLRDFLSDSLRPKPW 295


>gi|15829563|ref|NP_308336.1| transcriptional regulator [Escherichia coli O157:H7 str. Sakai]
 gi|13359766|dbj|BAB33732.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           Sakai]
          Length = 300

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 13/278 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 12  NYNELYLFMQVVREGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDIQ
Sbjct: 72  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIQ 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 132 LELINESRFVDIIEERFDAGVRLGPEVSQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 191

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNW-LATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
            +L  H  I   F D        + W L   D+ I  +P       +SY+   +   LG 
Sbjct: 192 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHQPEGQWAFSDSYME-AEAARLGL 245

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           G+A +P  +V D+     L+R+++        ++  YP
Sbjct: 246 GLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 283


>gi|294023792|ref|YP_003547111.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292677572|dbj|BAI99088.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 292

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 128/284 (45%), Gaps = 28/284 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +WD +  F  V   G F  AA+ L  S S +SR IS LE  +G +LF R+ R +T T
Sbjct: 1   MTSEWDGIEEFLAVYDRGRFAPAAKSLRKSPSHVSRAISRLEARLGERLFQRNTRIVTPT 60

Query: 61  EQGSKLHRVTSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           E     H       H +E       L +    P G L +  +I  G+ ++   ++ F+  
Sbjct: 61  EFA---HAFADRCRHMVEDRIEAFALSDGQGPPRGALNVTCSIAFGERVIAPLIRHFVKQ 117

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP +   L L+N+ +D+  +  D AIR    +  S LI R++ +  ++  A P YL+   
Sbjct: 118 YPQVIATLDLNNRVVDLVSENYDVAIRTGH-LSDSRLIGRRIGSRKLYLCATPDYLEKHG 176

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIM 232
            P  I +L  H  I       +   D  W   VD      RP G      L+VNS  ++ 
Sbjct: 177 VPSDINDLKYHACI-------QGTADV-WHFIVDDKLVDFRPKGP-----LRVNSGTAVA 223

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
              +   GI  LPD+ V+   ++ +LV ++E    P   ++  Y
Sbjct: 224 DAALASFGICQLPDFYVEPYINSGSLVSLLETSSVPEEPIWVVY 267


>gi|295677070|ref|YP_003605594.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436913|gb|ADG16083.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 312

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YPD+ ++L
Sbjct: 66  LQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVSRYQQRYPDVHVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ L   +  S L+ +++ +    A A+P YL+    P +  +L
Sbjct: 126 TLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRIGSAFSIACASPAYLERHGVPQTPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS----CLQVNSYLSIMQYCVLGSGIA 242
            +HN +    ++        W  T D P GE  +S      QVN   +++     G GIA
Sbjct: 186 AQHNCL---QMVTPVHPPDRW--TFDGPNGEEVVSLGSATFQVNVAEAMVVAVAQGMGIA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L+P Y       +  L  ++ +  +    +Y  YP       K++ +  F+
Sbjct: 241 LIPIYSAISRLRSGELEWLLPEYTSQQMNLYALYPSRQYLDAKIRTWVEFL 291


>gi|207723575|ref|YP_002253974.1| hypothetical protein RSMK00859 [Ralstonia solanacearum MolK2]
 gi|206588776|emb|CAQ35739.1| hypothetical protein RSMK00859 [Ralstonia solanacearum MolK2]
          Length = 306

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 132/298 (44%), Gaps = 15/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT
Sbjct: 1   MSNPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G      + ++   +E  Q   + S     G+LR+   + + + ++   L  FL  +P
Sbjct: 61  QDGQAFFERSQDLLADMEELQTMFRHSPQALRGRLRVDMPVGVARKIVIPALPAFLDAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L   ++ +D+  +  DC +R+   +  SSLI R L  +     A+P YL     P
Sbjct: 121 QLEIELSSTDRRVDLVREGFDCVLRIGA-LSDSSLIARPLGQLPQMNCASPAYLARYGMP 179

Query: 181 LSIQELDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235
            S+ +LD+H L+    T G  +P       W   VD R    P    L V++  S    C
Sbjct: 180 RSLDDLDQHRLVHYVQTLGTKVP------GWEYVVDGRAAYRPMQGVLTVSTAESYEAAC 233

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G G+   P   +        LV ++         V   YP       +++ F N++
Sbjct: 234 QAGLGLIQAPVSGLAPQVARGELVDVLPQYRPAPMQVSLVYPNRRNLPVRVQVFMNWV 291


>gi|148254217|ref|YP_001238802.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406390|gb|ABQ34896.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 319

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 16/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA++L LS +  S+ +  LE  +  +L  R +R + LTE G    
Sbjct: 7   IRVFCQVAELKSFAAAADRLGLSPAMASKHVMQLEQRLSTRLLNRTSRRVGLTEAGQVYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +  + +++V P G L+++  +     L  G L  +   YPD+ I L 
Sbjct: 67  DQVRPMLESLDEVEAVVSKATVIPRGTLKVSAPVWFANPLFAGTLAAYRARYPDVVIDLD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +++  +  D A+R+        LI R L  + M   AAP YL     P ++ +L+
Sbjct: 127 LSGRLVNLVDEGFDLALRVSA-APGDGLIARPLTPVLMQLVAAPSYLATAGRPKAVADLN 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVLGSGIAL 243
            H ++ +     + +       T+  P GE  ++   V    N  L +    V G G+A+
Sbjct: 186 GHAMLKYALYPLRTI-------TLSSPDGEVALAFKDVLISGNETL-LHHAAVAGMGMAV 237

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +++ D+     L  ++ D +T    +   YP     + K++ F +FI
Sbjct: 238 LPRWLMADDLASGRLETVLPDAMTIRAPLMAVYPSRKYLSAKVRTFIDFI 287


>gi|187732113|ref|YP_001880166.1| LysR family transcriptional regulator [Shigella boydii CDC 3083-94]
 gi|187429105|gb|ACD08379.1| transcriptional regulator, LysR family [Shigella boydii CDC
           3083-94]
          Length = 299

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 128/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G    
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|312960095|ref|ZP_07774607.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311285589|gb|EFQ64158.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 297

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 123/257 (47%), Gaps = 7/257 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L  + ++++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAQRLKTTHATVARHIEAIEKSLGTALFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     + EL   +  P GK+R+     LG   L G +      YP +
Sbjct: 62  GEALLKHAEAMENVALLAEDELTHCAA-PLGKIRLGVAEGLGVMFLAGRMGGLFERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P     L+ RKL    +  YA+  YL        
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-SVDQLVTRKLTDYRLSLYASRAYLDRNPPIEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H+ I + D +    E   +L++  R    P++      S ++  Q    G GIA
Sbjct: 180 REDLAAHSWIDYVDDLLFSQE-LKFLSSFCR---NPKV-VFHSTSVIAQHQAARSGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIM 259
           +LP ++   +P+LV ++
Sbjct: 235 VLPCFMAASDPDLVALL 251


>gi|299065907|emb|CBJ37087.1| putative HTH-type transcriptional activator aaeR [Ralstonia
           solanacearum CMR15]
          Length = 305

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 131/289 (45%), Gaps = 32/289 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+   +F  V  +GSFT AAE L + +SS S  +S LE  +G++L  R  R L LTE 
Sbjct: 1   MEWNDWEIFCRVVEAGSFTAAAEALGIPKSSASAAVSRLEASLGVRLLTRTTRQLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P++
Sbjct: 61  GSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQYLTEPVCQTLARFPNL 120

Query: 123 QIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+ +  +  D ++  Y    + + + +  SSL+ R++V I    YAAP  L       
Sbjct: 121 QIQVHISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAG----- 175

Query: 182 SIQELDKHNLITFGDLIP-KCM---EDFNWLATVDRPIGEPRISCLQV---------NSY 228
                 +  L+T  DL    C+   +D +W   V RP G P     +V         N+ 
Sbjct: 176 ------RAPLVTPADLAGWPCLSGPDDASW---VFRPAGAPAADPFEVPIQPRLQTLNAE 226

Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           +   +  V G G+A +   +     +   LVR++ D       VY   P
Sbjct: 227 MR-ARAAVRGLGVARMARSVGDAEVETGRLVRVLPDYEPTPLRVYALMP 274


>gi|256024482|ref|ZP_05438347.1| putative LysR-family transcriptional regulator [Escherichia sp.
           4_1_40B]
          Length = 294

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 131/284 (46%), Gaps = 24/284 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS ISR +  LE  +G++L  R  R L+LT  G
Sbjct: 6   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGISRAVRELEERLGVQLLVRTTRKLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+R     +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  ELLYRNVESGFDALDMGLATLAHYRHTPSGTVRINASQHAIDKVLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  IRL   + S  +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIITERFDAGIRLGSEVDSGMVAVRISPDMEMAVVGTPGHFQRYGFPQTP 185

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L  H  I   FGD        + W    D  +   +P+      +SY+   +   LG 
Sbjct: 186 TDLVGHPCIAYQFGD-----GSLYAWELNQDGKKITHQPQGQWAFADSYME-AKAARLGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT 280
           G+A +P+ +V D+     L+R+++           CY + L+ +
Sbjct: 240 GLAYVPEELVSDDIEQGALIRVLQ-----------CYSQRLEGS 272


>gi|206578426|ref|YP_002239083.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|290512792|ref|ZP_06552157.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206567484|gb|ACI09260.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|289774675|gb|EFD82678.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 293

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 128/252 (50%), Gaps = 15/252 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+WD  R+F  +AR+G+ + AA+++++  +++SR++  LE  + + LF RH  G  LT+ 
Sbjct: 5   FNWDDARIFLAIARAGTLSGAADKMNMGIATVSRRLDRLEQSLKVPLFSRHQSGYRLTDD 64

Query: 63  GSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G   L R  +  Y  L   +    +  V  +G +R+AT+ +L  + +  +LK  L  YPD
Sbjct: 65  GEALLARAEALEYAGLAFGEAAQLQGHV--AGVVRLATSDNLATHFILPSLKGLLDHYPD 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++++   + +++    AD AIR+ KP  +  L  ++L T+    Y A  YL    + L
Sbjct: 123 LRVEVLSGVQPVNLHRRDADLAIRMVKP-DAGHLTLKRLGTVGFGVYGAASYLAGA-DGL 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ E D          +P       W+    R  G P   C ++ N+ ++ +     G G
Sbjct: 181 SLSEADFVGWPETHQHLPAA----QWITRTLR--GRP---CKVEANTLVAQVSAVSAGLG 231

Query: 241 IALLPDYIVKDN 252
           + +LP ++ + N
Sbjct: 232 LGVLPHFMARAN 243


>gi|148550969|ref|YP_001260399.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148503380|gb|ABQ71632.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 294

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 140/287 (48%), Gaps = 8/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD LR+F  VAR+G  T A + L ++ ++++R+++ LE  +G  LF R +RG+ +T  G+
Sbjct: 4   WDDLRLFLAVARAGRLTKAGQALGINHTTVARRLTALEEALGAHLFDRTSRGVAMTAAGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L         + E     L   +   +G++R+AT    G  ++  N+ +F   YP + +
Sbjct: 64  LLLDHAERAEREFEAAAAALSGRAEAIAGEVRLATPEAFGTYIVAPNIVDFHARYPGLLL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SI 183
           +L+ +++ + ++   AD AI + +P +   L+ RKL    +  YA+  YL  C  P+ + 
Sbjct: 124 ELMPESRAVSLANREADIAITVDRPPR-GKLVVRKLCDYRLGLYASADYLA-CHPPIRNA 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q++     + + D     M D + L  +     E R    + +S ++  +    G G+ L
Sbjct: 182 QDVAAQPFVGYID----QMIDMHGLRYLSEVADETR-PVFRSSSIVAQQKAVASGVGLGL 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  +     P LVRI+ + +  + + +       + + + +A  +FI
Sbjct: 237 LHRFSADSEPGLVRILPEQVEITRSYWLVLRPEHQKSPRTRAVIDFI 283


>gi|320199700|gb|EFW74290.1| LysR family transcriptional regulator YhjC [Escherichia coli
           EC4100B]
          Length = 323

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|241766718|ref|ZP_04764555.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241362935|gb|EER58644.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 302

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 130/294 (44%), Gaps = 24/294 (8%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR   V   V  +GSF  AA QL +S   + + I  LE  +G +LF R  R  +LTE 
Sbjct: 2   DKLRNMEVMVAVVEAGSFAGAARQLGISAVMVGKHIQQLEAHLGARLFQRSTRRNSLTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  H  +  V  ++   +  ++ S   P G LR++    LG + +   + +FL  +  +
Sbjct: 62  GAAFHEDSRRVLEQVRWAESAVERSRAVPQGLLRVSAPFTLGTHAIAPLVADFLQRHEHV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L +  +D++ D  D A+R+ + +    L+ R L    M   AAP YL+    P  
Sbjct: 122 RVDLQLSDSVVDLAGDGFDAAVRIGQ-VVDEGLVARPLRPYRMVIAAAPAYLQRHGTPEG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235
             +L +H+          C+    W   V+  + +       P  + L  N    + Q  
Sbjct: 181 AADLARHH----------CLSHSVWQRRVEWTLRDGDETFFWPENARLVCNQGEGLRQAA 230

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + G G+ + P+ ++ D+     LV +M+  +     V+  Y    +   KL  F
Sbjct: 231 LRGLGLVMQPEVLLADDLARGALVPVMQHCLPLPRPVHLVYAPDRRQLPKLARF 284


>gi|116696448|ref|YP_842024.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530947|emb|CAJ97294.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 301

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 136/286 (47%), Gaps = 32/286 (11%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D +R   V  R+   GS +  A +   +Q +IS+ ++ LE E+G++L  R    L+ TE 
Sbjct: 2   DTIRAMQVFVRAVELGSLSAVAREQQSTQPTISKVVAALEKEMGVRLLERSTTSLSPTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + H     V  +      + +  S +P+G++R++     G   L   +  F   YP++
Sbjct: 62  GRRFHERARRVLDEYGEAVSDARGMSGQPAGRVRVSAPASFGVLRLNALVLAFQQRYPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCRE 179
           +++L+ D++ +D+  +  D A+RL   +  + + +R  V+  +   A+P YL      R+
Sbjct: 122 EVELLFDDRFVDLVEEGVDIAVRLGASLPPNVVARRIAVSPRLL-VASPDYLARHARIRQ 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLAT-----VDRPIGEPRISC---LQVNSYLSI 231
           P    +L +H ++            F WLA      +D P G+  +S     +VN+ L++
Sbjct: 181 P---ADLARHQILR-----------FTWLAAGDEIVLDGPGGQAPVSASCRYRVNNSLAM 226

Query: 232 MQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            +  + G+G  + P ++V+   D+  L R++     P+   +  YP
Sbjct: 227 RESFLAGAGFGMTPAWLVQDLLDSGALQRVLPRWSGPAQEAFLVYP 272


>gi|71065690|ref|YP_264417.1| LysR family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71038675|gb|AAZ18983.1| probable transcriptional regulator, LysR family [Psychrobacter
           arcticus 273-4]
          Length = 303

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 140/288 (48%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   GSF++AA  L LS   +S+ +S LE ++ I+L  R  R ++LTE GS 
Sbjct: 5   DAMRAFVAVVTEGSFSNAANTLQLSPQLVSKYVSKLEEQLNIRLLNRTTRKVSLTEAGSH 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++   ++  + +L      P G LRI+  +      +   + +F + YP + + 
Sbjct: 65  YFGHAQQILLNIDDMESQLGGLQQNPKGVLRISAPVSFALKHMAKLITDFQMRYPLVTVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +DI  +  D A+R+ + +++SSLI +K+  I +   AAP YL     P   ++
Sbjct: 125 LQLTDRKVDIVEEGFDVALRIGQ-LKNSSLIAKKVAPIRVVLCAAPEYLNKHGTPTQPKD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H  + +  +     ++ + L          + S  + N+   +++  + G+G+ L P
Sbjct: 184 LEHHRYLHYSYMNMDSKDNIHQLLKAKY---LKQGSEFRSNNGDVLVEAAIAGAGLVLQP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +I+ +   +  LV ++ ++   +  +Y  Y        K++ F +F+
Sbjct: 241 TFIISEAISSGKLVVVLPEIEPEALGLYAVYAHRKLLPHKVRCFIDFM 288


>gi|325275865|ref|ZP_08141722.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas sp.
           TJI-51]
 gi|324099006|gb|EGB96995.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas sp.
           TJI-51]
          Length = 311

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 138/289 (47%), Gaps = 10/289 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA  GSFT AAE+L+L+ S+IS+ ++ LE  +G +LF R  R L+L+E G   +R 
Sbjct: 12  VFVAVADLGSFTAAAERLNLTSSAISKSVARLEARLGARLFNRTTRSLSLSEAGVVFYRT 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + V   LE  +  L  S  +P GK+RI      G+  +   + +F+ L+P +Q  +   
Sbjct: 72  CTSVLADLEEVEHTLAASDDQPHGKVRIELPASYGRLHVLPLILDFIRLHPLLQPHVSFS 131

Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D   +  D  +R+  P    ++L  +      +   AAP YL+    P   ++L+ 
Sbjct: 132 DRFVDPVHEGIDIVVRIGGPDAWPAALGHQYFGAQRLMFCAAPGYLEKHGVPQHERDLEH 191

Query: 189 HNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           H+ + +G    L+            ++R   +PRI+   V      +   + G GI  LP
Sbjct: 192 HHCVGYGHTDGLVSPWYFKGRHPGEMERRTVQPRIA---VGDGEGEVAAVLAGHGIGQLP 248

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            ++ +   D   LV ++  + T    +   + ++ +   K++A  +++ 
Sbjct: 249 TWLTQQYLDQGRLVEVLPALATDGLPMNLVWLKSREGLPKVRALLDYLL 297


>gi|319791206|ref|YP_004152846.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593669|gb|ADU34735.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 298

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 138/294 (46%), Gaps = 14/294 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW  +R F      GS   A+  L  SQ ++ R I+ LET++G+ LF R  RGL  T
Sbjct: 7   LDFDWRLVRAFLAALDHGSLLAASRALGSSQPTLGRHIAELETQLGVVLFERTGRGLRPT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
              ++L    +E    +E+  + L  S    +   +G +RI+ +    + +L   L    
Sbjct: 67  AMAARL----AESARAMESGAVSLSRSVSGANAATAGTVRISASQATARQMLPALLVRMR 122

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
              P+IQ++L+  N+  ++    AD AIR+ +P  +++++ R++    + A+A   YL+ 
Sbjct: 123 QELPEIQVELVSTNEVSNLLRREADIAIRMTEPT-TATVVARRIGRFALGAFAQADYLRR 181

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P    +L +H+++ + D I   +     L T   P+      C + +   +  +   
Sbjct: 182 RGTPRQTADLLRHDVLGY-DRIDTIVRMSAQLGT---PLQREDF-CFRTDDMGAYWEALR 236

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  + + + + +  + R++  +  PS  V+      ++   +++A  +F+
Sbjct: 237 QGMGIGFVSESLARTDSQVQRVLPQLKIPSLPVWLAVHREIRTDRRIRAVYDFL 290


>gi|253771648|ref|YP_003034479.1| LysR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163443|ref|YP_003046551.1| putative DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|242379040|emb|CAQ33839.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|253322692|gb|ACT27294.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975344|gb|ACT41015.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253979500|gb|ACT45170.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
          Length = 323

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|320181513|gb|EFW56431.1| Putative transcriptional regulator LYSR-type [Shigella boydii ATCC
           9905]
          Length = 303

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 4/238 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H+ + +        E         R I + R      N  ++++++   G+GIA +P
Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 234


>gi|218703560|ref|YP_002411079.1| putative LysR-like transcriptional regulator [Escherichia coli
           UMN026]
 gi|293403392|ref|ZP_06647483.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|293408421|ref|ZP_06652260.1| transcriptional regulator [Escherichia coli B354]
 gi|298379004|ref|ZP_06988885.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300895665|ref|ZP_07114264.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|301020090|ref|ZP_07184220.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|331651180|ref|ZP_08352205.1| putative transcriptional regulator [Escherichia coli M718]
 gi|331661642|ref|ZP_08362565.1| putative transcriptional regulator [Escherichia coli TA143]
 gi|218430657|emb|CAR11526.1| Putative LysR-like transcriptional regulator [Escherichia coli
           UMN026]
 gi|291429245|gb|EFF02265.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|291471599|gb|EFF14082.1| transcriptional regulator [Escherichia coli B354]
 gi|298280117|gb|EFI21621.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300360394|gb|EFJ76264.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300398967|gb|EFJ82505.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|331050921|gb|EGI22973.1| putative transcriptional regulator [Escherichia coli M718]
 gi|331060064|gb|EGI32028.1| putative transcriptional regulator [Escherichia coli TA143]
          Length = 294

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 132/282 (46%), Gaps = 21/282 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDI+
Sbjct: 66  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYC 235
            +L  H  I   F D        + W    D      RP G+  +S    +SY+   +  
Sbjct: 186 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHRPEGQWALS----DSYME-AEAA 235

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            LG G+A +P  +V D+     L+R+++        ++  YP
Sbjct: 236 RLGLGLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 277


>gi|218550527|ref|YP_002384318.1| DNA-binding transcriptional regulator [Escherichia fergusonii ATCC
           35469]
 gi|218358068|emb|CAQ90714.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           fergusonii ATCC 35469]
 gi|324115153|gb|EGC09117.1| LysR substrate binding domain-containing protein [Escherichia
           fergusonii B253]
 gi|325498822|gb|EGC96681.1| DNA-binding transcriptional regulator [Escherichia fergusonii
           ECD227]
          Length = 309

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 4/239 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H++     +L   +  P G LRI  +  + QN+L G   + L  YP + + L
Sbjct: 66  YQGCRRMLHEVRDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLTVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLSQYGIPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +        E         R I + R      N  ++++++   G+GIA +P
Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240


>gi|188993301|ref|YP_001905311.1| putative transcriptional regulator, LysR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735061|emb|CAP53273.1| putative transcriptional regulator, LysR family [Xanthomonas
           campestris pv. campestris]
          Length = 310

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 20/303 (6%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D +D ++ F  V  SGSFT AA+ L +S++++++ +  LE  + + L  R  R + +
Sbjct: 1   MAMDRFDAMQAFARVVESGSFTKAADTLQISRATVTQLVQQLEARLRVTLLNRTTRRVAV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G+  +     +   ++  +  L  +S  P G+LR+     L + +L   L +F   Y
Sbjct: 61  TADGAAYYERVVRLLADMDDAETSLSVASSVPRGRLRVDVPSPLARLILMPALPDFHARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDIQ+ +   ++ +D+  +  DC +R    I   SL+ R +  +    YAAP YL     
Sbjct: 121 PDIQLHMGASDRRVDLIGEQIDCVVR-GGTITDQSLVARHVGDLQAGVYAAPGYLARLGM 179

Query: 180 PLSIQELD--KHNLITF---GDLIPKCM---EDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           P   +EL+   H  I F   GD +P  +    D   +    R +    ++    N+YL+ 
Sbjct: 180 PAHPRELEDTAHRTIGFMRWGDGVPWPLVMQRDGEHVQVHRRYV----VASDDGNAYLAA 235

Query: 232 MQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
               + G G+  LP Y+ +       L+ +  D       +   +P     + KL+ F +
Sbjct: 236 ---GLAGMGVLWLPQYMARAPLSRGELLPVFADWQLDPMPLSIAFPPNRHVSAKLRVFID 292

Query: 289 FIF 291
           ++ 
Sbjct: 293 WVI 295


>gi|167570921|ref|ZP_02363795.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 294

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 131/288 (45%), Gaps = 13/288 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  VAR G+ + AA +L +  +++ R+++ LETE+ ++L  R  R  TLT  
Sbjct: 2   FDWENLRHFLAVARVGTLSGAARELGVDHATVGRRVTMLETELQVRLVERFPRHCTLTGA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++  + S +       +  +Q    + +G + ++    L  N        F   YP I
Sbjct: 62  GRRIFEIASTMESGAFAIERAVQAERSQLTGTVVVSAPPVLVTNFFAATTTAFRERYPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L    + + +S   AD A+RL +P ++ +++ R++  +    YAA  Y      P  
Sbjct: 122 QLALSGQAQSVSLSRREADVAVRLVRPKEAGNVV-RRIGAMEFALYAARRY------PY- 173

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +QE  +   I + D     M    WL  V    G+  + C ++    S       G+GI 
Sbjct: 174 LQEPARWEFIGYDDQFDD-MPQQRWLKKV---AGKRPVVC-RLGDITSQFAATRAGAGIG 228

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP ++   + +LV +  D       ++      LK    ++A  +FI
Sbjct: 229 MLPRFLPSASDDLVELDADAEPFVRDIWLVVHRQLKAAPPIRAVMDFI 276


>gi|241205513|ref|YP_002976609.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859403|gb|ACS57070.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 300

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 133/264 (50%), Gaps = 18/264 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V     F+ AA    ++ S++S+ ++ LET +G++L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERCGFSAAATARRMTPSAVSKLVARLETRLGVRLVNRSTRKLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +  +  +   +   + E Q S+  + SG++RI T+   G ++L   +  F+ L+P + + 
Sbjct: 71  YERSITILADI--AEAERQASTGEQASGRIRINTSGSFGNHVLAPLVPAFMALHPAVTLD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  + AD AIR   P+++SSLI RKL        AAP YL    +PL+I +
Sbjct: 129 ISHTDRIVDLMEERADVAIRA-GPLKNSSLIARKLGATGKIIVAAPDYLSRHGKPLTIAD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241
           L +H  I F     + +E ++      R  GE    P    LQV    ++    + G+G+
Sbjct: 188 LRRHCRIGFS--YARAIEGWSL-----REGGETVMIPITPGLQVGDGEAMRHLALSGAGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDV 262
           A L  + V+   D   LV ++E+ 
Sbjct: 241 ARLAAFTVRADIDAGRLVPVLEEA 264


>gi|157148818|ref|YP_001456137.1| putative DNA-binding transcriptional regulator [Citrobacter koseri
           ATCC BAA-895]
 gi|157086023|gb|ABV15701.1| hypothetical protein CKO_04651 [Citrobacter koseri ATCC BAA-895]
          Length = 309

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 4/239 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLTVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLAQFGVPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +        E         R I + R      N  +++ ++   G+GIA +P
Sbjct: 185 SNHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLSRWLTAGAGIAYVP 240


>gi|86359220|ref|YP_471112.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86283322|gb|ABC92385.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 342

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE G   
Sbjct: 51  RIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 110

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121
           +R  S++  +++     ++E++ +  G+LR++        D+GQ+L+     +F    PD
Sbjct: 111 YRSASDILKEIDNLADLVRENNAQLKGRLRVSVPRTFVDADVGQSLI-----DFAGENPD 165

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H  A P +L+  R P 
Sbjct: 166 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKISDFRVHLCATPDFLE--RYPD 222

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                D  NL    D   +      +    +          ++VNS  + ++  + G GI
Sbjct: 223 LDHPSDISNLPFIVDTNSRTQGSIRFHNPDNTTFAVAVAGPIEVNSPHATLRAALAGIGI 282

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL+PD+I +   ++  LV +  D I     +Y  YP       K++ F +++
Sbjct: 283 ALIPDFIARKPIESGELVTLFNDYIPTDRGIYAVYPHRRYLPAKVRIFVDYL 334


>gi|328474658|gb|EGF45463.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 298

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 102/187 (54%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT  G + +
Sbjct: 10  IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTHAGERFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++   I   + + +  G +R+      +G++++   + EF+  YP++ I L
Sbjct: 70  HDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYPNVSIDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID+  D  D A R+ + +  +  + RKL+T+ M   A+P Y++    P   +EL
Sbjct: 130 DFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMPKHPKEL 188

Query: 187 DKHNLIT 193
            +H  +T
Sbjct: 189 AEHRTLT 195


>gi|238026739|ref|YP_002910970.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237875933|gb|ACR28266.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 318

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 20/254 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+A  GSFT AA +L +S++++S +I+ LE   G+ L  R  R + LTE G 
Sbjct: 10  WVHLHWLTVLADQGSFTGAAARLGVSKAAVSLKIAELERAAGVPLVQRTTRSVRLTEAGL 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T  +Y ++  +   ++++  +  G LR+   + L +  L   L EF   YP ++I
Sbjct: 70  RLADETRPLYDRISQSFSGVRDTGAQVRGSLRVTAPVALARQQLVPRLAEFRRRYPAVRI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++   ++ +  D AIR        + +  KL   H    AAP YL     P    
Sbjct: 130 QLDVSDRLASLATEGFDLAIR-HSAAAPETHVAWKLCRTHSVIVAAPAYLAVRGAPAHPD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-----------LATVDRPIGEPRISCLQVNSYLSIMQ 233
           +L  H+ + +    P+  +   W            A V  PIG P    L  N+   +  
Sbjct: 189 QLAGHDCLYY----PRSHDSAAWTFERAGTRRQRAARVTVPIGGP----LGANNSEVLRD 240

Query: 234 YCVLGSGIALLPDY 247
             + G GIALLPD+
Sbjct: 241 AALDGLGIALLPDF 254


>gi|170734910|ref|YP_001774024.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820948|gb|ACA95529.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 310

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 139/289 (48%), Gaps = 13/289 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  +G+F+ AA+ + ++   +SR I+ LE  + I+LF R  R ++LTE+G + +  
Sbjct: 14  VFAAVVDAGTFSAAADVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVSLTEEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE              GKLRI     + + +L   L  F+  +P+++I+LI  
Sbjct: 74  VMPHLAGLEEAATAAAGGVSAVRGKLRINLDPVVYRAILGPRLDVFMDAHPELEIELIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK- 188
           +   D+ MD  D A+R  +P ++SSLI RKL+   +   AAP Y+     P   ++L+  
Sbjct: 134 DSLGDLVMDGFDLAVRFGEP-RASSLIARKLLDTGVVTVAAPSYIARRGRPAKPEDLEDR 192

Query: 189 -HNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242
            H  + F +  P+  + F W       R + + R   L VN   +++  C+ GSGIA   
Sbjct: 193 HHRCLEFRN--PETGKPFAWEFHRKRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249

Query: 243 -LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  + ++ D   L+ +  +     + +Y  YP       K +AF +F+
Sbjct: 250 LLGAEPLIADG-RLINLFPEWADERYPLYAYYPSRHHVPAKTRAFLDFM 297


>gi|83719042|ref|YP_442062.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83652867|gb|ABC36930.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 332

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 133/288 (46%), Gaps = 13/288 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  VAR G+ + AA +L    +++ R+++ LETE+  +L  R AR  TLT  
Sbjct: 40  FDWENLRHFLAVARVGTLSGAARELGADHATVGRRVTMLETELQTRLVERFARHCTLTGV 99

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++  + S +       +  +Q    + +G + ++    L  N        F   YP I
Sbjct: 100 GRRMFEIASTMEAGAFAIERTVQAERSQLTGMVVVSAPPVLVTNFFAKETTAFRERYPGI 159

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L    + + +S   AD A+RL +P ++ +++ R++  +    YAA  Y      P  
Sbjct: 160 QLALSGQAQSVSLSRREADVAVRLVRPKEADNVV-RRIGAMEFALYAARRY------PY- 211

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +QE  +   + + D     M    WL  V    G+  I+C ++    S       G+GI 
Sbjct: 212 LQEPARWEFVGYDDPFDD-MPQQRWLKKV---AGKRAIAC-RLGDITSQYAATRAGAGIG 266

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP ++   + +LV +  D    +  ++      LK +  ++A  +FI
Sbjct: 267 MLPRFLPAASDDLVELDVDAEPFARDIWLVVHRQLKASPPIRAVMDFI 314


>gi|195939441|ref|ZP_03084823.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. EC4024]
 gi|256018843|ref|ZP_05432708.1| putative DNA-binding transcriptional regulator [Shigella sp. D9]
 gi|256024183|ref|ZP_05438048.1| putative DNA-binding transcriptional regulator [Escherichia sp.
           4_1_40B]
 gi|261228248|ref|ZP_05942529.1| transcriptional regulator, LysR family protein [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255104|ref|ZP_05947637.1| putative DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O157:H7 str. FRIK966]
 gi|297517621|ref|ZP_06936007.1| putative DNA-binding transcriptional regulator [Escherichia coli
           OP50]
 gi|301028719|ref|ZP_07191927.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|306816422|ref|ZP_07450554.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
 gi|307139931|ref|ZP_07499287.1| putative DNA-binding transcriptional regulator [Escherichia coli
           H736]
 gi|331659523|ref|ZP_08360465.1| HTH-type transcriptional activator AaeR [Escherichia coli TA206]
 gi|222034953|emb|CAP77696.1| HTH-type transcriptional activator aaeR [Escherichia coli LF82]
 gi|299878265|gb|EFI86476.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|305849987|gb|EFM50446.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
 gi|307625164|gb|ADN69468.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UM146]
 gi|312947793|gb|ADR28620.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|320175960|gb|EFW51036.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           CDC 74-1112]
 gi|320189590|gb|EFW64249.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EC1212]
 gi|320194720|gb|EFW69350.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           WV_060327]
 gi|320202153|gb|EFW76728.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           EC4100B]
 gi|320640035|gb|EFX09616.1| transcriptional regulator [Escherichia coli O157:H7 str. G5101]
 gi|320645605|gb|EFX14614.1| transcriptional regulator [Escherichia coli O157:H- str. 493-89]
 gi|320650915|gb|EFX19372.1| transcriptional regulator [Escherichia coli O157:H- str. H 2687]
 gi|320656296|gb|EFX24208.1| transcriptional regulator [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661986|gb|EFX29394.1| transcriptional regulator [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666820|gb|EFX33799.1| transcriptional regulator [Escherichia coli O157:H7 str. LSU-61]
 gi|323183004|gb|EFZ68403.1| HTH-type transcriptional activator aaeR [Escherichia coli 1357]
 gi|326337938|gb|EGD61772.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. 1125]
 gi|326347507|gb|EGD71232.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. 1044]
 gi|330909287|gb|EGH37801.1| putative transcriptional regulator LYSR-type [Escherichia coli
           AA86]
 gi|331054105|gb|EGI26134.1| HTH-type transcriptional activator AaeR [Escherichia coli TA206]
 gi|332345199|gb|AEE58533.1| transcriptional activator protein AaeR [Escherichia coli UMNK88]
          Length = 303

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 4/238 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H+ + +        E         R I + R      N  ++++++   G+GIA +P
Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 234


>gi|15596398|ref|NP_249892.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100650|ref|ZP_01364568.1| hypothetical protein PaerPA_01001676 [Pseudomonas aeruginosa PACS2]
 gi|116049149|ref|YP_792049.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892822|ref|YP_002441691.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234334|ref|ZP_04927657.1| hypothetical protein PACG_00174 [Pseudomonas aeruginosa C3719]
 gi|254239568|ref|ZP_04932890.1| hypothetical protein PA2G_00185 [Pseudomonas aeruginosa 2192]
 gi|313106176|ref|ZP_07792429.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9947128|gb|AAG04590.1|AE004550_6 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115584370|gb|ABJ10385.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166265|gb|EAZ51776.1| hypothetical protein PACG_00174 [Pseudomonas aeruginosa C3719]
 gi|126192946|gb|EAZ57009.1| hypothetical protein PA2G_00185 [Pseudomonas aeruginosa 2192]
 gi|218773050|emb|CAW28862.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310878931|gb|EFQ37525.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 304

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 141/300 (47%), Gaps = 18/300 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + ++ F  V   GS + AAE++ LS+S IS+++S LE  +G++L YR  R +  T
Sbjct: 1   MSLRLEDIQAFLNVVELGSISAAAERMSLSKSVISKRVSDLERHLGVRLLYRSTRNVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           E G   ++        L      + L+E+ +   G+LR+   +  G   L   + EF+  
Sbjct: 61  EAGGFFYKSAKASLQDLNNAAESVALRENDL--CGELRVMAPMSFGTLWLGPLVMEFMAR 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            P +++ L LD++ +D   +  D AIR+ + +Q SSLI R+L T       +P YL+   
Sbjct: 119 NPRLEVVLQLDDRIVDFEKEGYDLAIRITR-LQDSSLIARQLGTSRRVVCCSPEYLERHG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RI----SCLQVNSYLSIMQ 233
               I+++  H  I +    P  +  F       R  GEP R+         N+  ++  
Sbjct: 178 PLQRIEDILCHPCIGYSHNTPSQLWSFE-----PRVAGEPARMITPRGRFNTNNGQTMRD 232

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
             V G G+A+LP +I  ++    R++E +         +Y  Y  A   + K+K F  F+
Sbjct: 233 AAVRGLGLAMLPLFIAAEDLAAGRLVEALPQERPLDDLIYAMYSRAATLSPKVKLFVQFL 292


>gi|251789721|ref|YP_003004442.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538342|gb|ACT06963.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 297

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 128/270 (47%), Gaps = 8/270 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G +L 
Sbjct: 9   LTAFVVVAEERSFTKAALRLGMAQSALSQIVRRVEARLGLRLLSRTTRSVAPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H L+T    L E   +PSG LRI T     + +L   +K  L   PDI I++ 
Sbjct: 69  AKLGPMLHDLDTVIGSLGELRDRPSGTLRITTVEHAAKTILMPAMKRLLADNPDIHIEVN 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+  +D+  +  D  IRL   I    +  R    I M   A+P YL     P +  EL 
Sbjct: 129 VDHALVDVVANQFDAGIRLGGDIDKDMIAVRIGPDIPMAIVASPAYLARHPAPTTPAELF 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H+ I F   +P       W L +  R I       L VN+   ++   + G G+A +  
Sbjct: 189 DHSFINF--RLPTSGTLIGWPLMSDGREIRVRGQGQLVVNTIDLLVDAVLDGHGLACIHL 246

Query: 246 DYIVK--DNPNLVRIMEDVI--TPSFTVYF 271
           D + +  DN +L++++  +    P + +Y+
Sbjct: 247 DQVQRFIDNGSLIQVLSGLTRDIPGYHLYY 276


>gi|220933474|ref|YP_002512373.1| Carbonate dehydratase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994784|gb|ACL71386.1| Carbonate dehydratase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 305

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 141/295 (47%), Gaps = 25/295 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +G F  AA++L +S++ +S+ +  LE  +G +L  R  R ++LTE G   +
Sbjct: 7   MSTFVEVVNAGGFAAAAQRLGVSRAQVSKAVMRLEAHLGTRLLNRTTRRISLTETGRVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +++  +    E S +P G+L ++     G   LQ  + E++  YP++Q+ L 
Sbjct: 67  ERCRDILEEIDEIERIAGEQSDRPRGRLTVSAPTSFGILHLQKLIPEYITAYPEVQVSLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D AIR+ + ++ SSLI R++        A+P YL     P   Q+L 
Sbjct: 127 LSDRFVDVVAEGFDLAIRIGE-LEDSSLIARRIAPSRRVFCASPEYLARQGTPKVPQDLA 185

Query: 188 KHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVL-GSG 240
            H  LI   DL P       W  T+  P G      ++VN  +      I++   L G G
Sbjct: 186 IHACLIYANDLKPD-----TW--TLHGPRG---TESVKVNGPVCADNGDILRASALAGLG 235

Query: 241 IALLPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + LLP +IV   P+L      +++        +++  YP     + K++ F  F+
Sbjct: 236 VTLLPTFIV--GPDLASGRLQQVLHAYCPADISIHAVYPSRRYLSAKVRTFVEFL 288


>gi|241113060|ref|YP_002972895.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861268|gb|ACS58934.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 305

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 135/276 (48%), Gaps = 9/276 (3%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           S+  AA    +S S+I + ++ LE+ +G++LF R  R ++LTE+G+ L+     +   ++
Sbjct: 18  SYVAAARVGGVSPSAIGKAVARLESRLGVRLFNRTTRSISLTEEGAVLYERYKRIIDDMD 77

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
             +  +  S  +P G+LR++    +G +LL   L  F   +P+I++ +  ++K ID+  +
Sbjct: 78  DAEATISRSRERPRGRLRVSVPHIVGHHLLMPILPVFAEQFPEIELDIDFEDKVIDLVAE 137

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D  +R  + +  + LI R L   H     +P YLK    P +  +L +H  I F    
Sbjct: 138 GLDVVVRSGE-LADARLIARHLGDQHFVVCGSPDYLKRHGRPETPDDLSQHACIHFK--Y 194

Query: 199 PKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PN 254
           P       W     RP    P    L +N+  + ++    G G+A LP Y+ + +    +
Sbjct: 195 PSSGRVAPW--AFRRPCERLPLPRGLTLNNTDAGLRAARDGLGLAHLPVYVAEPHMRTGS 252

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LV ++   + P  ++   +P   + + K++AF +F+
Sbjct: 253 LVPVLTSFMVPYGSLSLVWPSNRQLSPKVRAFVDFV 288


>gi|34495964|ref|NP_900179.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34101818|gb|AAQ58186.1| probable transcriptional regulator LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 298

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 15/288 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  VA  GSF  A   L +S S++ ++IS LE ++G++L  R+ R L LT +G  +
Sbjct: 6   ELAVFIAVAEQGSFVGAGRVLGVSASAVGKRISRLEVDLGVRLLQRNTRSLALTAEGETV 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  + E+ ++ L+ SS +P G LR++     G  +L   L  F   YP++ ++L
Sbjct: 66  LSRGRSLLDEAESLRVVLERSSRQPGGVLRLSLPPIGG--VLMAELAAFRQRYPEVALEL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +++DI  +  D AIR+        L    L        AAP YL    +P S  +L
Sbjct: 124 DYSERNVDIIEEGFDAAIRV-GAGDDGKLRSLALPGFRRLIVAAPDYLVRHGQPRSAAQL 182

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H LI +    P   +   W L   + P        L  NS  + + + + G GIA LP
Sbjct: 183 AEHQLIHYRS--PNSGKLEAWPLVNAELP------RALVCNSVHARLDFALQGQGIACLP 234

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D  ++   ++ +L  ++         +   +P +   + +++AF  F+
Sbjct: 235 DISIRRELEDGSLRPLLGSENGEKVVLRLLWPSSRGLSARMEAFLGFM 282


>gi|332991888|gb|AEF01943.1| putative transcriptional regulator [Alteromonas sp. SN2]
          Length = 291

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 122/256 (47%), Gaps = 8/256 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA +GSFT AA +L  S + ISR+++ +E  +G+KLF R  R ++LT+ G 
Sbjct: 3   WEGIVEFCAVASTGSFTAAATKLDTSGAQISRKVANVEKRLGVKLFNRTTRSVSLTQAGH 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  ++   +    P G +++   +  G+  +   + +FL  Y  I++
Sbjct: 63  IYFEQCQPALKALEEAELNTSQLQKVPQGLIKLTAPVAFGEAFIAPLINQFLKKYEGIEV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +    N  +DI  +  D AIR+   ++ S+L+ +KL T  ++  A+P YL    EP    
Sbjct: 123 ECRFTNDTMDIIDEGYDLAIRIGN-LEDSTLVAKKLATRQLYVCASPEYLNVFPEPKRTD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H  +      P    +    A   R  G      ++ NS  ++    + G G+  L
Sbjct: 182 MLSEHQCLVGSQ--PHWRFNHEGQAQTVRVKGR-----VKYNSGNALHHAALAGLGLVQL 234

Query: 245 PDYIVKDNPNLVRIME 260
           P + V+++  + +++E
Sbjct: 235 PGFYVRESLAVGKLIE 250


>gi|301382204|ref|ZP_07230622.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302134277|ref|ZP_07260267.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 299

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 134/286 (46%), Gaps = 13/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A  GSFT  AE + + +  ++R I  LE  + ++LF R  R + LT +G + +
Sbjct: 1   MQVFAKLAELGSFTRVAEAMQVGRPHLTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60

Query: 68  -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV S +    ETT +  +  S    G+LRI   +   Q      L+ F   +PDI + L
Sbjct: 61  ERVKSNLADLAETTSMFDRNGSTL-RGRLRIDIPVAFSQRSFMETLRGFTRAFPDIDVVL 119

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+  +  DCA+R+ + +  SSL+ R +    M   AAP YL+    P ++++L
Sbjct: 120 GVTDRTVDLVAEGIDCALRIGE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTPETLEDL 178

Query: 187 DKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +H  ++F  L  +      W   L   D P   P    + VN   + +Q  + G GI  
Sbjct: 179 KRHCGVSF--LSGQNNRPLPWHFSLNGEDLPY--PAQGAITVNESNAYVQCGLAGFGILQ 234

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            P   V+    +  LV ++E        V   YP       +++AF
Sbjct: 235 APGITVESFLASGELVEVLEAYRPLPRPVSVLYPSRTHLAPQVQAF 280


>gi|167590777|ref|ZP_02383165.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 305

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 134/290 (46%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GS T A++   L+   +S  +S LE  +G +L  R  R + LTE G   +
Sbjct: 7   MRVFTRIVETGSLTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRIALTEDGRAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  + ++   P G+L++     + + ++   L  FL  +P I I+L 
Sbjct: 67  ERCVAVLREIDDMEASVSQARNAPRGRLKVNLPPAMAKQIMVPALPAFLAAHPSITIELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S LI +++ ++     A+P YL+   EP ++++L 
Sbjct: 127 VTDRQIDLVGEGVDCVVRV-GALDDSGLIAKRIGSLTTCTCASPAYLERFGEPETVEDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  +    +         W   VD   GEPR+      + VN   + +   V G G+  
Sbjct: 186 QH--VAVSHISADTGRPRAWEYIVD---GEPRVMQMCGTVAVNDADTYIACGVAGIGLIK 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              Y+V     +  L  ++    TP+  +   YP       KLK F +++
Sbjct: 241 TSLYLVDPYLKSGELREVLTGFNTPARPISVLYPPNRHVPAKLKLFVDWL 290


>gi|293395466|ref|ZP_06639750.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422150|gb|EFE95395.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 298

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 133/292 (45%), Gaps = 11/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V + GS   AA +L  S  +++R ++ LE  VG +L  R  R L  TE G +
Sbjct: 5   DELAIFVAVVQQGSLAAAARKLRRSAPAVTRAVASLEQRVGARLVERTTRRLAPTEAGLR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +  Q  L  +  + SG LRI   +  G+  +   +  FL  YP I I+
Sbjct: 65  LAERACAVLGDYQ--QAVLDTAPTQVSGLLRITAPVQFGRKFVAPIVMAFLEQYPQIDIE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+++++D+  +  D A+R+      SS + R+L  +     A+P YL  C EPL+  +
Sbjct: 123 MQLNDRNLDLIDEGLDIAVRIGHQ-HDSSRVARRLGWVRRVTVASPAYLARCGEPLNPAQ 181

Query: 186 LDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ I  G       E  F      +R    PR   L +N   S +     G GIA L
Sbjct: 182 LTDHHTI-IGTQHGALREWRFGPQENHERVRLTPR---LMLNDVESQLLAARAGQGIARL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             Y V D+    +LVR++      +  V     +  +   K++ F +F F +
Sbjct: 238 LSYQVADDLAAGSLVRVLTSFEPQALPVQLVANQVQQMPLKVRTFWDFAFAQ 289


>gi|237808732|ref|YP_002893172.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500993|gb|ACQ93586.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 317

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 15/290 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR GSFT AA  + ++ +++S+ ++ LE  +G++L  R  R L+LT +G+      
Sbjct: 13  FVHAARLGSFTAAARLIDVTPAAVSKNVAALEASLGVRLMNRTTRSLSLTAEGTLFLSQA 72

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 LE     L  +   P G +R++    +G+ LL   L + L L+P + ++L  D+
Sbjct: 73  QLALESLEQAVESLTTAKSNPVGLVRMSVPNVIGRRLLMPVLPDLLALHPGLNVELDFDD 132

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D   +  D  +R    I  SS+I R L  + +   A P YLK    P    +L KH 
Sbjct: 133 RLVDFVQEGYDLVVR-GGTIHDSSMISRSLGPLKLGLVATPDYLKKFGVPKQPGDLSKHK 191

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           LI+   L  K      W  T  +P G     EPR + + ++   +++Q  + G GIA + 
Sbjct: 192 LISRRFLGSKLSP---W--TFHQPDGKVFLFEPRSTAITLSDPEAMIQAALSGLGIAEVG 246

Query: 246 DYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIF 291
            Y+  +   +  L  I+ D   P +F +   YP       +++A  +F+ 
Sbjct: 247 IYLAWEHLQSGALKLILHDSHDPGAFELMLQYPHRALLAPRVRATADFLL 296


>gi|149910258|ref|ZP_01898903.1| hypothetical transcriptional regulator, LysR family [Moritella sp.
           PE36]
 gi|149806727|gb|EDM66692.1| hypothetical transcriptional regulator, LysR family [Moritella sp.
           PE36]
          Length = 297

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 138/288 (47%), Gaps = 10/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F   A++ + T AA QL +S ++ S  +  LE ++G++LF R  R L +T +G +  
Sbjct: 6   LTLFVRTAQTCNITAAALQLDMSPAAASAALKRLEKQLGVQLFIRSTRKLRITAEGERYL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +E    LE  +  L E   K +G++R++T+ DLG+N++   L E +  YP++ IQL 
Sbjct: 66  VHCTEALAALEKGKASLNEMQGKIAGEIRLSTSSDLGRNIVLPWLDEMMDAYPELSIQLN 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D   D  D A+R  +P + SSL+   +  I     A+P YL    EP    EL 
Sbjct: 126 VGDSLADFFHDKVDMALRYGEP-EDSSLVAFLIAKIDRVVCASPQYLAQYGEPQHPNELS 184

Query: 188 KHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +HN  L  FG+ +       +     +  +   R+S    N    + ++ V G GI +  
Sbjct: 185 QHNCLLYRFGERVYDTWPFSDHAGKYNVKVSGNRLS----NDADVVHRWVVAGKGITMKS 240

Query: 246 DYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +     +V ++ +  +P+ +++   P   + T  +   R+ +
Sbjct: 241 RLDMAADLRAGYVVELLHNFNSPAISLWLICPNRTQVTPAMLMLRDLL 288


>gi|73539470|ref|YP_299837.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122807|gb|AAZ64993.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 304

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 123/269 (45%), Gaps = 10/269 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F     +  F+ AA +L L+ SS++R + GLE  +G  L  R  R +T+TE G+  +
Sbjct: 7   LKMFVETVDAKGFSAAARRLDLATSSVTRALDGLEASLGAVLLNRSTRQITVTEAGATYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   +E     + +   +P G+LR++  +  G+  +   L  +L  YP +++ + 
Sbjct: 67  QRARRILDAVEEADALIADRGEEPVGQLRVSLPVAFGRRCIAPYLGGWLAKYPQLEVDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D ++RL  P    +++ R++        A+P YL++   P    +L 
Sbjct: 127 LTDDIVDLVGERVDLSVRLGSPASYDNVVAREIGRFRRRVVASPAYLESRGCPDDPVDLV 186

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + F         D  W     D     P     + N+   +    + G+GI LLPD
Sbjct: 187 NHRCLRFS----YGTRDQVWTFRQGDSETKVPVSGHFRSNNIDVLRDIALAGAGIGLLPD 242

Query: 247 YIVKDNPNLVRIMEDVITPSFTVYFCYPE 275
           +++ ++    R+M     P F  +   P+
Sbjct: 243 WLIDEDIESQRLM-----PLFDAWSVNPD 266


>gi|260469868|ref|ZP_05814013.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259028358|gb|EEW29689.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 296

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 140/301 (46%), Gaps = 25/301 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-- 64
           +L V   VA+ GSF  AA++L ++ S++S  +S LE  +G++L  R  R +  TE+G+  
Sbjct: 8   QLAVLATVAQCGSFRGAAKELAIAPSAVSHAVSSLEARLGVRLLSRSTRSVAPTEEGARL 67

Query: 65  --KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             +L    SE+   LET      E+  +P+G LR++        +L   L  F   YPDI
Sbjct: 68  LERLRPALSEIDLALETA----VEARDRPAGNLRLSVPRTAAHLVLTPRLGAFAAAYPDI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++++++++  D+     D  +RL + +Q   +  R    I      AP Y +    P  
Sbjct: 124 VLEIVVEDRFTDVVEGGFDAGVRLGESLQRDMIAVRIGPDIRGAVVGAPSYFEAMPIPRH 183

Query: 183 IQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            ++L  H  I F    G L       + W     R   E  +   L ++    I Q  V 
Sbjct: 184 PRDLADHRCIRFRFSSGIL-------YRWEFEKGREAIEMAVEGPLILDEDHLIAQAAVD 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFIFLK 293
           G+G+A + +  V+    +  L+R++ED   PSF  +F  YP   +    L+AF +F  + 
Sbjct: 237 GAGLAFVFEPYVRAPLADGRLIRVLED-WCPSFDGFFVYYPSRRQMRPALRAFVDFFKVS 295

Query: 294 A 294
           A
Sbjct: 296 A 296


>gi|241765020|ref|ZP_04763015.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241365378|gb|EER60177.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 307

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 16/282 (5%)

Query: 6   DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+ F     VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R ++LT +
Sbjct: 2   DKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLLVRTTRRISLTHE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS        +   +   +  + E  VK +G LRI      G+  +   +  F   +PD+
Sbjct: 62  GSAFLEDCQRLLSDVANAEASVSEGGVKATGHLRITAPAGFGRRHVAPLVPRFRTAHPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P  
Sbjct: 122 TISLNLSDRVVDLAGEGFDCAVRVGD-LPDSSLVSVRIADNRRLCVATPAYLQGHGTPRH 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCV 236
             EL  H+ +T   L  +  +   W   +    G   +  L+    L       +  +C+
Sbjct: 181 PAELSAHDCLT---LSSEASQTRGWAFRMPTDGGGSEVVHLKPGGPLDCSDGQVLHDWCL 237

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            G G+A    + V+       LV ++E+   P   +Y  +P+
Sbjct: 238 AGYGLAWRSTWEVESEIAAGRLVEVLEEFAAPPNGIYVVFPQ 279


>gi|238561297|ref|ZP_00442128.2| putative HTH-type transcriptional regulator YhjC [Burkholderia
           mallei GB8 horse 4]
 gi|238524723|gb|EEP88154.1| putative HTH-type transcriptional regulator YhjC [Burkholderia
           mallei GB8 horse 4]
          Length = 267

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 117/238 (49%), Gaps = 6/238 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+ G+ 
Sbjct: 33  DLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAA 92

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+     +   +E  +   + S V PSG LR+     +G+ ++   L EFL  YP I ++
Sbjct: 93  LYERCLRLIADVEEAENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVE 152

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 153 LGVTDRAVNLIEERVDCVLRVGT-LSDSGLVARAIGDLPLINVASPAYLARHGVPRTPAD 211

Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L++H  + +       +  + W+    V R     R++   VNS  + +  C+ G G+
Sbjct: 212 LERHRPVNYASPSNGRVAPWEWVEGDEVKRVALRARVT---VNSAEAYIACCLAGLGL 266


>gi|229589030|ref|YP_002871149.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360896|emb|CAY47756.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 301

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 134/293 (45%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L +R  R L+LT  G +  
Sbjct: 7   MRVFVTVVDLGSQSAAADHLDLSRPVVSRYLAELEDWVGARLLHRTTRKLSLTAAGGETL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++       Q  + E    P G LR++ +   GQ  L   + E++  YP + + L 
Sbjct: 67  PRCRQLLELCCDMQAAVSEPDDAPRGLLRLSVSTSFGQAQLAEAIAEYVKRYPLVTVDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  +  D AIR    +   +LI R+L        A+P YL+    P  ++EL 
Sbjct: 127 MLDRTVNLVDERIDLAIRTSNDLD-PNLIARRLTVCRSVVCASPAYLRAHPAPRKVEELA 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            HN +T   FG    K +  F      V  PI       +  N   ++++  + G+G+++
Sbjct: 186 AHNCLTHSYFG----KSLWHFEEGGEHVSVPIN----GNITSNEASTLLRVTLAGAGVSM 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP Y   D      LVR++ +       +Y  Y         L++  +F+ L+
Sbjct: 238 LPTYQAGDYIRRGELVRLLPEAEPRQMNIYAVYASRKHMPSALRSLLDFLVLR 290


>gi|160897737|ref|YP_001563319.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363321|gb|ABX34934.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 314

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 15/294 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+ R+F  VA  GSF  AA  L L ++++S  +  LE +VG +L +R  R ++LT  G++
Sbjct: 9   DRYRIFMQVAEMGSFIKAAHALDLPRATVSAAVQQLEEQVGARLLHRTTRQVSLTADGAQ 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + E  +   Q  + + +G+L +     + + LL   L   +  +P +Q+ 
Sbjct: 69  LLERVRPLLSEAEDVEQMFQARTRQATGRLHVDVPSRIARRLLAPALPGLMRRHPGLQLV 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCA+R+   +  SSL+ R L  I +   A+P YL+    P   ++
Sbjct: 129 LGSSDRAIDLVQEGVDCAVRV-GTLHDSSLVVRPLGCIALINCASPAYLREHGLPEQPRD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNW----------LATVDRPIGEPRISCLQVNSYLSIMQYC 235
           L  H   + G   P+   +  W          +  VD P      S +  N+  S +  C
Sbjct: 188 L-LHGHWSVGYASPRTGRELPWEWSGASDVDGVNGVDGPQTLAVPSRVVTNNAESYIACC 246

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             G G+  +P Y V+   D   LV ++         V   YP   + + +L  F
Sbjct: 247 RAGLGLIQIPRYDVQHLLDTGELVEVLPAHRAAPMPVALLYPHRRQRSRRLAVF 300


>gi|325523061|gb|EGD01473.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 304

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 13/292 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +A   SFT AA ++ +S++++S+ +  LE ++ +KL YR  R ++LTE G +L+   
Sbjct: 12  FVHIAHHLSFTKAAAEMGVSRAALSQNLKALERQLNVKLLYRTTRDMSLTEDGQRLYDTL 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              +  +E     L E   +PSG LRI T+    + LL+ +L EF+  YP ++++L++D+
Sbjct: 72  RPAFGSIEAALRNLHEVRHEPSGLLRINTSRVAARTLLEPHLGEFMARYPLLRVELVMDD 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              +I  D  D  IRL + +    +       + M     P Y      P +  +L  HN
Sbjct: 132 GLSNIIADGYDAGIRLGESLAEHMVAVPITPMLEMVVAGTPDYFARHGTPATPADLIGHN 191

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            + +       +  + W  T     G     EP+ S +  N    +++  + G G+    
Sbjct: 192 CLCYRHTTSGAI--YRWEFTSSEVEGHAFEVEPQGSVV-TNDDDGMIRAALQGIGLIQHQ 248

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCY-PEALKNTGKLKAFRNFIFLK 293
           D  ++   D   LVR++     P F  Y+ Y P   +   K++A  +F+  K
Sbjct: 249 DIALREHLDAGTLVRVLAPWCKP-FPGYYLYTPSREQMPAKVRALMDFLVEK 299


>gi|262373106|ref|ZP_06066385.1| transcriptional regulator [Acinetobacter junii SH205]
 gi|262313131|gb|EEY94216.1| transcriptional regulator [Acinetobacter junii SH205]
          Length = 303

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F +VA   SF+ AA    +  +++SR I+ LE  +   LF R  R + LT QG 
Sbjct: 10  FSSVELFCLVAEYESFSKAALHAGVGPAAVSRSIARLEKHLATPLFVRTTRQVRLTTQGK 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +  +++   + +L+  + +PSG +RI+     G   +   L +F   YP IQ+
Sbjct: 70  IYFDECKQALNQILEAEQQLKNQTQQPSGLIRISVPTPYGHYRILPLLAKFSQQYPSIQV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L NK++D   +  D AIR R+    S+LI R+L    +   A+P YLK    P S++
Sbjct: 130 DVQLTNKNVDFIAEGYDLAIRGRQ-FADSNLIARQLEQAELIVVASPEYLKQFGTPQSLE 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240
           +L  H  I F  ++P   ++  WL   ++ + E      I CL  +  L  +      +G
Sbjct: 189 DLQHHQCIQF--VLPSTGKNVPWLFNSNQQLIEYQSAGNIRCL--DDILGTVTLAKHSAG 244

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +     +IV++   N +L+ ++ +    S      YP     +  ++ F +F+ 
Sbjct: 245 LLQTYRFIVENELKNGDLIEVLTEFSGTSRPFSLLYPSKKHESFHIRVFIDFLL 298


>gi|227823451|ref|YP_002827424.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227342453|gb|ACP26671.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 297

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 147/292 (50%), Gaps = 16/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G  L  R  R  +LTE G   
Sbjct: 6   RIRAFIDVVDAEGFSAAARRVGKSKALLSKYVRELEDELGALLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIA---TTID--LGQNLLQGNLKEFLLLYPD 121
           +R  SE+  +++     ++ ++    G+LRI    T +D  +GQ+L+     +F   +P+
Sbjct: 66  YRSASEILKEIDNLADLVRANNSDLRGRLRITVPRTFVDAEIGQSLI-----DFGRQHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++ D++ +D+  +  D A+R+ + ++ S+LI RKL    +   A+P +L+      
Sbjct: 121 LSLEIVSDDRFVDLVEEGFDVAVRITR-LEDSTLIARKLDDFQVLLCASPGFLEKVGPLT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL K   I   D   +   ++ ++     P   P    ++VNS L+ ++  V G G+
Sbjct: 180 HPSELSKIPCIL--DTNGRSYSNWRFIEPDGSPFSVPVSGPMEVNSPLASVRAAVTGMGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +PD+I +    +  LV + +D +     +Y  YP       K++ F +F+
Sbjct: 238 APVPDFIARPKIQSGELVTLFDDYLPRDRGIYAIYPHRRYLPTKVRTFVDFL 289


>gi|262173152|ref|ZP_06040829.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
 gi|261890510|gb|EEY36497.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
          Length = 295

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 126/280 (45%), Gaps = 17/280 (6%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  SGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+IQLI         +       R    + S S     L       YA+P YL+    P 
Sbjct: 121 IRIQLITTTPGQLPELHLDLFISREIDQLNSLSFKATPLFEHQAGFYASPSYLEKHGTPK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           ++QEL +HN++ +G+      + +  + T        RI+        +  ++      G
Sbjct: 181 TLQELTQHNVLCWGE------QTYREVKTAQ----GKRITLTGNFATTNPEALFYAGKAG 230

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            G+ +    ++K+     NLVRI+ DV     TVY  YP+
Sbjct: 231 MGVIVTGHIMIKEELKQGNLVRILPDVTIDQATVYAYYPK 270


>gi|194436874|ref|ZP_03068974.1| LysR substrate binding domain protein [Escherichia coli 101-1]
 gi|194424356|gb|EDX40343.1| LysR substrate binding domain protein [Escherichia coli 101-1]
          Length = 295

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 131/284 (46%), Gaps = 24/284 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS ISR +  LE  +G++L  R  R L+LT  G
Sbjct: 7   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGISRAVRELEERLGVQLLVRTTRKLSLTHAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+R     +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 67  ELLYRNVESGFDALDMGLATLAHYRHTPSGTVRINASQHAIDKVLLPKLAVFKQRYPDIR 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  IRL   + S  +  R    + M     P + +    P + 
Sbjct: 127 LELISESRFVDIITERFDAGIRLGSEVDSGMVAVRISPDMEMAVVGTPGHFQRYGFPQTP 186

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L  H  I   FGD        + W    D  +   +P+      +SY+   +   LG 
Sbjct: 187 TDLVGHPCIAYQFGD-----GSLYAWELNQDGKKITHQPQGQWAFADSYME-AKAARLGL 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT 280
           G+A +P+ +V D+     L+R+++           CY + L+ +
Sbjct: 241 GLAYVPEELVSDDIEQGALIRVLQ-----------CYSQRLEGS 273


>gi|227818388|ref|YP_002822359.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227337387|gb|ACP21606.1| putative LysR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 301

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 134/287 (46%), Gaps = 13/287 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +  F   A +GS + A+ +L L++S +S +++ LE  +G KL  R  R L+LTE G 
Sbjct: 4   FDGIAAFVATAEAGSISAASRRLGLAKSVVSERLAELERILGTKLIQRTTRKLSLTENGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +    EL   S K +G LR++  +  G   L   L +F+  +P I++
Sbjct: 64  TFLPRAQRILREADEAAAELAARSGKLAGPLRLSAPVSFGILHLAPALTKFIQEHPQIEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + LD++ +D +    D  +R    I  S LI R+L T      A+P YL+    P SI 
Sbjct: 124 SVELDDRFVDAAAGGFDAVLR-HGAIGDSRLIARRLATSRRLLVASPAYLEREGHPASID 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL  H  I +       M + +W  + +    +  P+ + L+ N+ L + +  + G GI 
Sbjct: 183 ELQHHCGILY------SMREGDWRFSTEHGWQVVRPK-AALRANNGLVMREAAMAGLGIT 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LLP + + +   +  LV I          ++  YP     + K++A 
Sbjct: 236 LLPTFFIHEAVKSGVLVPIDVGARAEGAELFITYPRDHGASAKIRAL 282


>gi|172060447|ref|YP_001808099.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171992964|gb|ACB63883.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 301

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 141/298 (47%), Gaps = 9/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE+++G++L +R  R  TLT+ G
Sbjct: 5   DLPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESQLGVRLLHRTTRQQTLTDDG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  + +      G LR+    +LG+  +   +  F   +P++ 
Sbjct: 65  AQFHAQVLRILAEVERAETLMSDRRGTVGGVLRVTAPGELGRLRIAPLIAAFQRRHPELI 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P Y+     P   
Sbjct: 125 VQLMLTDAIVDLLAHDIDIAVRI-GSLADSTMIARELAPNHRVLCASPSYVAAHGLPAEP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I  GD  P+    F+    V   +     + L  N   +     + G+GIAL
Sbjct: 184 AELRAHRCIVMGDQ-PRADWRFDGAHGV---VAVEVTAALLTNDGGAARTLALEGAGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD-W 297
              + V    D   LVR++     P+  ++  YP       +++AF +F+  + RD W
Sbjct: 240 KSIWDVGADLDAGRLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVDFLREQLRDAW 297


>gi|66047029|ref|YP_236870.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257736|gb|AAY38832.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 297

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 129/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q+
Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W      R +          NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           +PD + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289


>gi|15799985|ref|NP_285997.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 EDL933]
 gi|168749126|ref|ZP_02774148.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4113]
 gi|168755828|ref|ZP_02780835.1| putative HTH-type transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761919|ref|ZP_02786926.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4501]
 gi|168769629|ref|ZP_02794636.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4486]
 gi|168775425|ref|ZP_02800432.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4196]
 gi|168782626|ref|ZP_02807633.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4076]
 gi|168788546|ref|ZP_02813553.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC869]
 gi|168799806|ref|ZP_02824813.1| putative HTH-type transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. EC508]
 gi|195937760|ref|ZP_03083142.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809313|ref|ZP_03251650.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4206]
 gi|208815571|ref|ZP_03256750.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4045]
 gi|208823112|ref|ZP_03263430.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4042]
 gi|209399565|ref|YP_002268902.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4115]
 gi|217326004|ref|ZP_03442088.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. TW14588]
 gi|254791439|ref|YP_003076276.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|261255953|ref|ZP_05948486.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12513063|gb|AAG54605.1|AE005205_3 putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|187769091|gb|EDU32935.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4196]
 gi|188016509|gb|EDU54631.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4113]
 gi|188999848|gb|EDU68834.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4076]
 gi|189356957|gb|EDU75376.1| putative HTH-type transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361299|gb|EDU79718.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4486]
 gi|189367656|gb|EDU86072.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4501]
 gi|189371652|gb|EDU90068.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC869]
 gi|189377882|gb|EDU96298.1| putative HTH-type transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. EC508]
 gi|208729114|gb|EDZ78715.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4206]
 gi|208732219|gb|EDZ80907.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4045]
 gi|208737305|gb|EDZ84989.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4042]
 gi|209160965|gb|ACI38398.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4115]
 gi|217322225|gb|EEC30649.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. TW14588]
 gi|254590839|gb|ACT70200.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|320192400|gb|EFW67044.1| Transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC1212]
 gi|326338844|gb|EGD62662.1| Transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. 1125]
 gi|326343452|gb|EGD67216.1| Transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. 1044]
          Length = 294

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 13/278 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDIQ
Sbjct: 66  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVSQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNW-LATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
            +L  H  I   F D        + W L   D+ I  +P       +SY+   +   LG 
Sbjct: 186 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHQPEGQWAFSDSYME-AEAARLGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           G+A +P  +V D+     L+R+++        ++  YP
Sbjct: 240 GLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 277


>gi|317049976|ref|YP_004117624.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951593|gb|ADU71068.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 310

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 140/291 (48%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  +  SGS + AA QL  +Q +ISR++  LE  +G+KL  R    L LT+ G + +
Sbjct: 13  MQTFIRIVESGSLSAAAAQLGTTQPTISRRLQALEQRLGLKLILRTTHALKLTDDGERCY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++       + EL  +S  P G LR+      GQ+ L   L ++L  YP + ++ +
Sbjct: 73  QQARQLLATWYALEDELTGASDDPVGTLRVRAPHAFGQDQLVAPLVDYLQRYPRLNVEWM 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++  D   +  DCAI++  P    S++   L  +     AAP  L      +++++L 
Sbjct: 133 LNDRTPDFVAENVDCAIQVGAPT-DPSVVAILLAEVPRFVVAAPSLLAAHPPVMAVEQLP 191

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               +       G++  + + D +    V+  I  PR++    +S  ++ +  + G G A
Sbjct: 192 NLPWLALTSFYHGEIALQRLSDGH---PVNLAI-SPRLAS---DSLYAVRKAALAGMGAA 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  ++V+++    +L++++ +   P   V+  YP A     +L+ F   I
Sbjct: 245 VVSSWVVQEDLARGDLIQLVPEWQAPPLPVWLTYPWASYYPARLQKFFAMI 295


>gi|116252847|ref|YP_768685.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257495|emb|CAK08592.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 303

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 138/306 (45%), Gaps = 19/306 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  D L VF  + R G F  AA +  +S S++S+ I+ LE  +GI+L  R  R ++ TE 
Sbjct: 4   FRLDSLDVFAAIVRCGGFRAAALERGVSSSALSQTINALEEALGIRLLNRTTRSVSPTEA 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +        +     +L +    PSG LRI        +LL   +  F+  YPDI
Sbjct: 64  GQRLLQRLGPALTDIRLAVDDLNQLKENPSGTLRINAPGPAIDHLLCPAMFTFMDTYPDI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++LI D   IDI     D  +R  K +    +      ++     A+P Y+     PL+
Sbjct: 124 KVELISDAAVIDIVEQGFDAGVRFGKQLAQDMIAVPLGPSLRYAIVASPDYIAKHGLPLT 183

Query: 183 IQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             +L  HN I      G L+    E       V   + E R   L V+S  + +Q  V G
Sbjct: 184 PNDLAGHNCIRRRFPGGTLVSWKFEKGGDALEV---LPEGR---LTVSSAHNELQAAVAG 237

Query: 239 SGIA-LLPDYIVKD--NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+A +  DY   D  N  L  +++D   + PS+ +Y  YP    ++  ++   +  FL+
Sbjct: 238 CGLAHIFEDYATPDLTNGRLTEVLKDWTPLLPSWYLY--YPSKRHSSAAMRELVS--FLR 293

Query: 294 ARDWKF 299
           + DWK 
Sbjct: 294 SYDWKL 299


>gi|283787836|ref|YP_003367701.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282951290|emb|CBG90985.1| LysR-family transcriptional regulator [Citrobacter rodentium
           ICC168]
          Length = 299

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 11/273 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+ L L + S+SRQI  LE  +G +L +R  R + LT+ G   +
Sbjct: 7   MQLFIRVAELESFSRAADALGLPKGSVSRQIQALENALGTRLLHRTTRQVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   LE      Q  +   SGKLR+   + + +NLL   L  FL  +P I+++L 
Sbjct: 67  ERAKELLSNLEELDGLFQYDTASISGKLRVDMPVSVARNLLIPRLPAFLQQHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+    Q + LI R L  + +   A+P YL+    P S+ +L 
Sbjct: 127 SSDRLVDVIREGFDCVVRVGTQ-QDAGLIARPLGKLTVINCASPQYLERFGYPESLDDLA 185

Query: 188 KHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H ++ +       P   E      T     G      L VNS  +    C+ G GI   
Sbjct: 186 SHAVVHYSINSATRPSGFEIVTLAGTQWIKTG----GTLTVNSTETYHAACLAGLGIIQT 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           P   V++      LV I+         V   YP
Sbjct: 242 PRVGVREALRRGALVEILPQYRAAPLPVSLLYP 274


>gi|271501127|ref|YP_003334152.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344682|gb|ACZ77447.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 304

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 135/279 (48%), Gaps = 15/279 (5%)

Query: 1   MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M    D+L +   F   A +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L
Sbjct: 1   MGLRMDRLLLMTCFVRTAETGSFSAAGRDLGLGQPNVSRHVATLEEHLQTRLLHRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT +G + +     +   +E ++   +E +V P+G LR+A    L    L  ++ +FL 
Sbjct: 61  SLTPEGERYYLEARRILEAVEESESSFRE-NVTPTGLLRVACPTALAHTFLVPHIPDFLE 119

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP++ + L ++++ I++  + A+ AIR+   ++ S++  R+L        A+  YL   
Sbjct: 120 RYPELTLDLQINDRYINLIDEGAELAIRIGH-LEDSAMRARRLGMFERVCVASNKYLAKH 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P   ++L KH+ + +  L       F       + I  P    L+VNS  ++ ++   
Sbjct: 179 GTPNIPEDLKKHDCLIYTLLTTGATWRF-------QDINVPVSGRLRVNSPEAVQKFVNA 231

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           G GIA  P+++ ++   N NL  ++ D   P   +   Y
Sbjct: 232 GVGIAQGPEWLFEEGLANGNLQLLLTDYTAPPVPIQAVY 270


>gi|317053836|ref|YP_004117861.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316951831|gb|ADU71305.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 307

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 14/275 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL- 66
           L  F VVA   SFT AA +L  SQ ++S+ +  LE  +G++L  R+ R + +TE G +L 
Sbjct: 9   LAAFLVVAEEKSFTRAAARLSTSQPALSQTVRRLEERLGVRLLIRNTRNVAVTEAGEQLV 68

Query: 67  ---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  S++ H+L+     L +   KP+G +RI         L+   ++E L  YPDI 
Sbjct: 69  NTLRPALSDIDHRLQA----LSQFRDKPAGTVRITAGQHAADTLIWPAIREVLHTYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L LD+   DI  +  D  IRL + ++   +  R    + M     P Y      P S 
Sbjct: 125 IELSLDSALTDIVSERFDAGIRLGERVELDMIAARIGPDLRMAVVGTPDYFAKHPIPKSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     + W  +  +R +         VN+ ++ ++    G G+A
Sbjct: 185 HELPHHTCINI--RLPSSGGIYAWEFSQGERELNVRVDGQFIVNNIVAALKAAEAGVGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           ++ + +V+   +   LVR++ +   P    +  YP
Sbjct: 243 MVMEDMVEAQLEEGKLVRVLAEWCAPFAGYHIYYP 277


>gi|170703933|ref|ZP_02894604.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|171320182|ref|ZP_02909243.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|170131160|gb|EDS99816.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|171094563|gb|EDT39616.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 315

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 128/295 (43%), Gaps = 18/295 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G   
Sbjct: 6   NMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD+ I+L
Sbjct: 66  LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHTQYPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P   Q+L
Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPEYVKRHGAPARPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  +T   L         W+      + +  ++  +Q N+  S+      G GI +LP
Sbjct: 186 GAHACLT---LCTPAFPTHEWVLEGAGGVEQIHVAGPVQTNTAESLALAIRDGIGIGMLP 242

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            Y   D   +  LVR++ + I     VY  YP            R F+  K R W
Sbjct: 243 LYSAIDALRDGTLVRVLPEHILQKMNVYALYPS-----------RRFVDAKVRTW 286


>gi|170020305|ref|YP_001725259.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739]
 gi|300916452|ref|ZP_07133190.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|169755233|gb|ACA77932.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|300416253|gb|EFJ99563.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
          Length = 299

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|86157404|ref|YP_464189.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773915|gb|ABC80752.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 311

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 139/291 (47%), Gaps = 18/291 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  L  F  ++RSGS   AA++L + ++++ R+++ LE E+G+ LF R  +G   T  
Sbjct: 21  LDWGNLLFFLELSRSGSLARAAKRLGVDRNTVGRRVAALEDELGLPLFERGPQGWACTAA 80

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L  + S V   +             P+G +R+ T++ +  +LL   +      +P +
Sbjct: 81  GEELAALASRVEEDVLAIARHADARDRTPAGTVRLTTSVPVASHLLAPAVPSLRARHPRL 140

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +  D ++ D++   AD A+RL +P   + L+ RK+ ++    Y +P + +  R    
Sbjct: 141 LLDVSADFRNYDLTRREADLALRLGRP-SDAGLVARKVASVAYGFYGSPAFAEERR---G 196

Query: 183 IQELDKHNLITF-GDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +L +  ++ + G   P  + M+D          +   R+   + N+ L++      G 
Sbjct: 197 RMDLARDPVLAYEGATSPQERWMDD----------LAPARLVPFRCNTSLALAAAARTGL 246

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G A+LP ++   +P LVR ++    PS+ ++      L+   +++A   ++
Sbjct: 247 GAAVLPCFVADGDPALVR-LDGPEPPSYDLWLLVHGDLRRVPRVRAVIEWV 296


>gi|91779296|ref|YP_554504.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691956|gb|ABE35154.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 303

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 135/295 (45%), Gaps = 16/295 (5%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+    F  +  + SF+ AAE L L +SS++  I  LE E+G  L  R  R L+LT+ 
Sbjct: 2   DKLQAMATFVRIVEAQSFSKAAETLSLPRSSVTTTIKSLERELGTTLLRRSTRTLSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   + EL   +  P G++R      +G+ ++   L EF   +P I
Sbjct: 62  GERYYMSCRAILAEIARVEGELSADTASPRGRVRADMPGVIGRAMVLPRLHEFAQRFPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++  D+  D  DC IR  + +  SSL  ++L  +     A+P YLK   EP +
Sbjct: 122 ELVLGLSDRPADLIYDGIDCVIRTGE-LADSSLTAQRLGELSWITCASPRYLKAHGEPAT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
           +  L+ H+ + +  +        +W   V    GE     +Q    VN   + +Q  + G
Sbjct: 181 VSALNDHHAVNY--ISNATGRPLDWRFHVQ---GEDLAIAMQSRFAVNETEAYLQCGLEG 235

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  L +++      +  L  ++    + +  V   YP     +G  + F ++I
Sbjct: 236 LGLIQLSEFVALPYLKSGRLKEVLATARSSAVPVSIMYPHGRNASGATRTFVDWI 290


>gi|113970198|ref|YP_733991.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|114047613|ref|YP_738163.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113884882|gb|ABI38934.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
 gi|113889055|gb|ABI43106.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 301

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 144/286 (50%), Gaps = 37/286 (12%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F +V   GSF  AA  + + ++S+SR+I  LE ++G KLF R  R L+LT  G  
Sbjct: 4   NDLRLFLLVVELGSFASAASSIGIPRASVSRRIGELEADLGTKLFTRTTRQLSLTPTGEN 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID---LGQNLLQGNLKEFLLLYPDI 122
            H+   E+  +LE+    ++     P+G +++    +   L  NLLQ    +FL  YP I
Sbjct: 64  YHQQLMEIIPRLESLNECVKNQRNMPTGTVKLGLVGEADVLTHNLLQ----DFLKNYPLI 119

Query: 123 QIQLILDNKDIDISMDYA-DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            I+  + N      ++Y  D  I +   I+ +S I R L+ +    YA+P Y+     P 
Sbjct: 120 TIETHVSNLGYHDILNYGLDACIHI-GSIKDNSFIARPLMRVSRKLYASPDYIATYGMPT 178

Query: 182 SIQELDKHNLITF----GDLIPKCMED---FNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
           S+++L++H L+ +    G+L     ED   FN        +GE R+    +++    +++
Sbjct: 179 SLEDLNQHALMIYRKQNGEL-----EDSWKFN--------LGEYRVKSRVISNSSHYVRH 225

Query: 235 CVL-GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVY-----FCYP 274
            +L G+GI+LL +  V ++  L  ++E  + P + VY       YP
Sbjct: 226 AILNGAGISLLAELSVVEHLRLGNLVE--VLPEYEVYVDDAWLVYP 269


>gi|319793104|ref|YP_004154744.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595567|gb|ADU36633.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 311

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 139/290 (47%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  V  +GSFT AA +L +S    S+ ++ LE  +G +L +R +R L+LTE G+  +
Sbjct: 7   LRVFREVVEAGSFTAAAGRLAMSPPMASKHVAQLEKSLGARLLHRSSRHLSLTEAGTAWY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +      L+  +  + ++S  P G+L+++  +          L ++   +P++ + + 
Sbjct: 67  EQSRRALDLLDAAEAAIGQTSEAPRGQLKVSAPVWCATPRFARVLADYRERFPEVLVDMH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +D++ D  D A+R  +   S +LI R L  +  H    P YLK      ++    
Sbjct: 127 LENRKVDLAADGYDLALRATQE-PSPALIARPLCRVPFHLAGTPDYLKRMGGCPALPA-- 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE--P-RISCLQVNSYLSIMQYCV-LGSGIAL 243
             +L   G ++P  +   N    +  P G   P R++    +   ++  + V  G GIA 
Sbjct: 184 --DLSRLGAIVPSYVNLDNL--ALKGPGGRMLPLRLTPAMRSDDTTLTLHAVHAGMGIAF 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P +++ D+     LVR++ D      T++  Y        KL+ F +F+
Sbjct: 240 MPLWLIDDDLAEGRLVRLLPDYEAQPVTLFAVYTSRQYMAPKLRTFIDFL 289


>gi|300717373|ref|YP_003742176.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299063209|emb|CAX60329.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 303

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 93/183 (50%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A+ G FT AAE+L L++S++ + +  LE  +G+KLF R  R L+LT  G +    
Sbjct: 12  AFVTTAQQGGFTAAAERLGLTKSAVGKSVGRLEARLGLKLFLRSTRRLSLTPDGERFLIS 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE  + EL     +PSG+LR+      G+  +   L +    YP++ + +   
Sbjct: 72  CQNAMDILEQAEAELTSHICQPSGRLRVDLPAAFGRQRILPILLQITRRYPELALTVTFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +D+  +  D  IR+ +   SS L+ R+L T  +   A+P YL    EP+S +EL +H
Sbjct: 132 ERFVDLIEEGIDLVIRIGELADSSGLVARRLTTQKLVICASPDYLLYGGEPVSSEELSQH 191

Query: 190 NLI 192
             +
Sbjct: 192 QCV 194


>gi|123443245|ref|YP_001007219.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090206|emb|CAL13070.1| LysR family transcription regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 303

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 94/183 (51%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A+ GSFT AAE+L L++S++ + +S LE  +G+KLF R  R L+LT  G K    
Sbjct: 12  AFVTTAQHGSFTAAAERLGLTKSAVGKSVSRLEDRLGLKLFQRSTRRLSLTPDGEKFLAS 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE  + EL      P+G+LR+      G+  +   L +    YP++ + +   
Sbjct: 72  CQSAIDILELAEAELTAHITHPAGRLRVDLPAAFGRQRVLPILLDITRQYPELTLTVTFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +D+  +  D  IR+ +   SS L+ R+L T  +   A+P YL +  EP+  +EL +H
Sbjct: 132 ERFVDLIEEGIDLVIRIGELADSSGLVARRLTTQKLVICASPEYLLHNAEPVQPEELSQH 191

Query: 190 NLI 192
             +
Sbjct: 192 KCV 194


>gi|325292046|ref|YP_004277910.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325059899|gb|ADY63590.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 299

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 140/295 (47%), Gaps = 27/295 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA SGS + AA++L  S + IS++I  LE ++G +LF R  R ++LTE G   +
Sbjct: 7   LEVFATVAASGSMSLAAKELGYSPAVISKRIKRLEEKLGARLFQRTTRQISLTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   LE  +  +   +   +G L+I+     G+  +  +LK F+  +PD+ + L+
Sbjct: 67  ERVLAVLEGLEDAEDFVSGRANTVNGTLKISAPTSFGRMHIAPHLKTFMERHPDLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ IDI     D AIR+   + SSSL+ R+L  +     A+  Y+     P +I++L 
Sbjct: 127 LSDEFIDIIEGGYDLAIRIAD-LNSSSLVARRLAPVRRVLCASAEYVTAHGMPATIEDLK 185

Query: 188 KHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           KH          +C+   N   W   ++ P G   I     L  NS   I +  + G GI
Sbjct: 186 KH----------RCLPAHNNDIW--RLEGPGGALSIRPEGMLVTNSSEVIREAVISGLGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
           AL   + +       R+++  + PS+      T+   YP       K++ F +++
Sbjct: 234 ALRSTWDIGHELRAGRLVQ--VLPSYEGSRNVTLSAVYPSRQFLPAKVRLFIDYL 286


>gi|188534836|ref|YP_001908633.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188029878|emb|CAO97762.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 304

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 32/298 (10%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS----- 64
           VF  + + GS T AAE L +S++ ++R ++ +E   G +L +R  R L+LT  G      
Sbjct: 9   VFITIVQRGSLTAAAETLDMSRAMVTRYLTQMENWSGARLLHRSTRRLSLTPAGEHALTR 68

Query: 65  --KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             ++  + +E+ H  +     L       SG LR++ ++ LGQ+L+   +  F   +PD+
Sbjct: 69  CQQMMALAAEIEHSNQPEGEAL-------SGLLRVSCSLSLGQSLVMPAIHAFQQRHPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L + N+ +++  +  D A+R+   ++  +LI R L T      AAP YL +   PL+
Sbjct: 122 RIDLHISNQRVNLIEERIDLALRITSQLE-PNLIARPLNTCRSVICAAPPYLAHAGTPLT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVL 237
            Q+L +HN +T+     K +  F          GE + +      L  N  + ++     
Sbjct: 181 PQQLTQHNCLTYSHF-GKSLWHFTR--------GEEKETVAVSGNLSANDSVMLLAATQT 231

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GSGI++ P Y       N  L+ ++ +       +Y  Y      + +L+A  +F+ +
Sbjct: 232 GSGISMQPTYSAGPLLANGQLIALLPEYQPEDLGIYAIYTSRQHQSPRLRALLDFLVI 289


>gi|152971928|ref|YP_001337037.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956777|gb|ABR78807.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 303

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 24/294 (8%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V   GSFT AA +L LS   + + I+ LE+++  +L  R+ R  +LT+ 
Sbjct: 2   DKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         V  ++   +  ++   + P+G LR++     G +++      FL  +P +
Sbjct: 62  GRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPAV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D+  +  D AIR+ + I    L+ R L    M   AAP YL     P +
Sbjct: 122 RVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPGT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYC 235
            ++L  H           C+    W A        V+  +   R + L+ N   ++ Q  
Sbjct: 181 PEDLTDH----------LCLSHTVWTARNEWRLPGVEGEVRWKRDAVLRCNDGYALRQAA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + G+G+ + P+ ++ D   + +LVR++E        V+  + +  +   KL  F
Sbjct: 231 IAGAGLLMQPEVLLADALASGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQF 284


>gi|157369623|ref|YP_001477612.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321387|gb|ABV40484.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 297

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 1/173 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G FT AA+ L + ++++++ I  LE  +  KLF R  R +++T +G   +
Sbjct: 8   IRVFNRVVETGGFTRAADSLRMPKATVTKLIQSLEDHLQTKLFQRTTRSVSVTAEGECYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T +   +LE  +  + ES   P G LRI       + LL   L +F+  YP IQI L 
Sbjct: 68  QRTVKWLAELEQMEGSMTESQSAPQGVLRIDVGGSTARQLLLPALPDFIARYPQIQIDLG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++ ID+  D ADC IR   P+  SSLI R+L  +     A P YL     P
Sbjct: 128 VGDRLIDLINDSADCVIR-SGPLADSSLIARRLFELEWVTCATPAYLARHGTP 179


>gi|116695357|ref|YP_840933.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529856|emb|CAJ96203.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 303

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 138/290 (47%), Gaps = 13/290 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   G FT A   L L +S++S ++  LE  +G++L  R +R   LT+ GS+ ++  
Sbjct: 10  FVQVVDRGGFTSAGNSLGLPKSTLSHRVKELEASLGVRLINRTSRQFALTDVGSEFYQYA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +    +  +  +++   +PSG +R+   ++L Q  L+  L  FL  +P + I  I  +
Sbjct: 70  VALLQSADVAEQAMRQRLAEPSGIIRVTVAVELAQFALRQVLPTFLSSHPKVSIVEIATD 129

Query: 131 KDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL--SIQELD 187
           + +D+  +  D A+R     +Q S+L+QR +V    + +A   YL+  R PL  + ++L 
Sbjct: 130 RLVDVVGEGFDLALRGHTSALQDSNLVQRPIVRAPWYLFAGADYLE--RMPLLDAPEQLA 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H +++   ++ K    +      DR +  P     Q NS +S+ +      G+A LP Y
Sbjct: 188 SHAIVS---MVRKGPLQWQLRGPDDRLVTIPVEPRFQSNSMMSLKEAACANVGVAALPGY 244

Query: 248 IVKDNPNLVRIMEDVITPSFTVYFCYPEALK--NTGKLKAFRNFI-FLKA 294
           I +  P L   +   + P +        AL    TG L A R+ + FL A
Sbjct: 245 ICR--PELQAGVLRQVLPGWIAADARISALMPYRTGLLPAVRSLVDFLAA 292


>gi|154245537|ref|YP_001416495.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159622|gb|ABS66838.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 313

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 1/195 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D ++L+ F  +   GS + AA +L ++ + +S++++ LE   G++L  R  R L+ T
Sbjct: 1   MLDDLNELKTFRAILAEGSLSAAARRLGITLAVVSKRLATLEDRAGVRLIQRTTRALSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++L          +E  + +L    V+PSG LR++  I  G+  +   L +    + 
Sbjct: 61  EEGARLLIDVERALDAIEAGEEQLASGRVEPSGTLRVSAPIAFGRRCVAPVLAQLAARHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L LD++ +D+  +  D AIR+  P  SS+++ RKL        AAP YL     P
Sbjct: 121 RLGVALELDDRVVDLVGEGFDVAIRIGAPADSSAMM-RKLADNRRILVAAPAYLDRAGRP 179

Query: 181 LSIQELDKHNLITFG 195
           ++ +E   H  + +G
Sbjct: 180 VTPEEAAGHAFLRYG 194


>gi|221199417|ref|ZP_03572461.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205680|ref|ZP_03578695.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|254255331|ref|ZP_04948647.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124901068|gb|EAY71818.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|221174518|gb|EEE06950.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180702|gb|EEE13105.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 314

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 16/291 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + VF  V   GSFT  A  L  +  ++SR +S LE  +  +L +R  R LT+T+ G 
Sbjct: 4   FQNMSVFAKVVEMGSFTAVANHLDSTVGNVSRAVSALEEALNTRLLHRTTRRLTVTDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +   + +   LE  + E +E+  +P G LR+     LG++L+   +  +   +P + +
Sbjct: 64  RFYERCAAILADLEHAEAEARETLFEPRGTLRVHCVPGLGRHLVTRAVLAYRKQFPQVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L  +  ++  D  D +I + + +  S+ + +K+ + H    A+P YL+    P   +
Sbjct: 124 DLLLQQRMPNLLEDQLDVSIVISRTLPDSAYVSQKIGSSHCVLAASPAYLEQHPAPADAE 183

Query: 185 ELDKHN--LITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLG 238
            L +H   L+T  D  P   ++++  +  D    RPIG P    L VN   S+      G
Sbjct: 184 ALAEHACILLTTVDYAP---DEWHLTSAADSVTFRPIG-PH---LCVNDMESMAVALRDG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +GI L+  +   D   +  LVR++ +  T S  VY  +        K+K F
Sbjct: 237 AGIGLIAGFSAIDDLRDGTLVRVLPEYHTHSRNVYAVHSSRQFVDAKVKRF 287


>gi|260466799|ref|ZP_05812984.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029411|gb|EEW30702.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 300

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 136/296 (45%), Gaps = 15/296 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +GSF+ AA  L ++ S++S+ I+ LE  +G +L  R  R L LT +GS  
Sbjct: 11  EIEVFVRVVEAGSFSAAARNLRMTPSAVSKLIARLEARLGARLVSRSTRKLQLTPEGSAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   +   + E    +    G+LR+ T +  G + L   L  FL  YP+I + L
Sbjct: 71  YESGLRILADMAAAEREAAAGAAP-RGRLRVNTYVPFGVHRLIPLLPRFLERYPEISVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  ID+  + AD AIR  + +  S L+ RKL    M   AAP YL     P    EL
Sbjct: 130 VLTDSVIDLMAERADVAIRAGQ-LGESRLVARKLGQSPMVVVAAPSYLGAHGTPRLPAEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D+HN + FG           W          P      V+   ++    + G+GIA L  
Sbjct: 189 DRHNRLAFG----FARYSDGWPFADGTSFTVPVSGNAMVSDGEAMRLMTIAGAGIARLAR 244

Query: 247 YIVKDNPNLVRIM---EDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + V+ +    R+M   ED     + P+  VY  + + L    +++AF +F+    R
Sbjct: 245 WHVEPDIATGRLMPLLEDFNPGDVEPTHAVYVGHGKHLP--ARVRAFLDFLVETVR 298


>gi|213969931|ref|ZP_03398064.1| transcription regulator preotein [Pseudomonas syringae pv. tomato
           T1]
 gi|213925256|gb|EEB58818.1| transcription regulator preotein [Pseudomonas syringae pv. tomato
           T1]
          Length = 305

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 134/287 (46%), Gaps = 13/287 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF  +A  GSFT  AE + + +  ++R I  LE  + ++LF R  R + LT +G + 
Sbjct: 6   SMQVFAKLAELGSFTRVAEAMQVGRPHLTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRF 65

Query: 67  H-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + RV S +    ETT +  +  S    G+LRI   +   Q      L+ F   +PDI + 
Sbjct: 66  YERVKSNLADLAETTSMFDRNGSTL-RGRLRIDIPVAFSQRSFMETLRGFTRAFPDIDVV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  DCA+R+ + +  SSL+ R +    M   AAP YL+    P ++++
Sbjct: 125 LGVTDRTVDLVAEGIDCALRIGE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTPETLED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H  ++F  L  +      W   L   D P   P    + VN   + +Q  + G GI 
Sbjct: 184 LKRHCGVSF--LSGQNNRPLPWHFSLNGEDLPY--PAQGAITVNESNAYVQCGLAGFGIL 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             P   V+    +  LV ++E        V   YP       +++AF
Sbjct: 240 QAPGITVESFLASGELVEVLEAYRPLPRPVSVLYPSRTHLAPQVQAF 286


>gi|213609501|ref|ZP_03369327.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 287

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 4/247 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMLMVVCAAKPYLAQYGVPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +        E         R I + R      N  ++++++   G+GIA +P  
Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPLM 236

Query: 248 IVKDNPN 254
            V D  N
Sbjct: 237 WVIDEIN 243


>gi|88798596|ref|ZP_01114180.1| putative transcriptional regulatory protein (LysR family) [Reinekea
           sp. MED297]
 gi|88778696|gb|EAR09887.1| putative transcriptional regulatory protein (LysR family) [Reinekea
           sp. MED297]
          Length = 299

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 137/295 (46%), Gaps = 18/295 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA + SF+ +AE+  +  SS+SR+I+ LE  +G  L  R  R ++LTE G +  
Sbjct: 7   LRYFASVADTSSFSRSAERFRVPPSSLSRRIADLEAHLGATLLNRTTRSVSLTEVGRQYA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   L      ++  S +P G LRI++ +  G++ L+  LK+F   YP I + + 
Sbjct: 67  KQIQPLLQNLAEADDAVRSYSKEPMGTLRISSMVSFGEHKLRPVLKDFSARYPKIVLDVH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +    +  D+ D AIR    + +  ++ ++L+       AAP YL+    P +  EL 
Sbjct: 127 LTDTVTTLDKDHIDLAIRGGY-VPNERIVAKRLMGNDFVPLAAPSYLQRHGTPTTALELR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +H  + F            WLA +D   + +  P  + +  N    + +  V G GI  +
Sbjct: 186 QHRGLYFR----TPAGPTPWLAKIDEQWQNVSGP--AVMTTNDGPWLREQAVNGGGIIFM 239

Query: 245 PDYIVKDN---PNLVRIMEDV---ITPS--FTVYFCYPEALKNTGKLKAFRNFIF 291
           P ++ ++      L+ +  D    ITP   F VY  Y     +  K+K   +++ 
Sbjct: 240 PKWVCEEEIERGQLIELTLDAPTRITPDNQFAVYLLYQTHRYSIPKIKVAVDYLL 294


>gi|209809726|ref|YP_002265265.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
 gi|208011289|emb|CAQ81733.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
          Length = 295

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 26/266 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R F  V R  +   A+E+L++ Q++I R+I   E  +   LF +   G TLT++
Sbjct: 1   MNWDDIRFFLAVYRCNTLGKASEELNVDQTTIGRRIKAFEKVINQNLFVKSPLGYTLTKE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL  +   +  +     IE +  +  P G +R+ TT  L  + +   +      YP I
Sbjct: 61  GDKL--LNDALAMESAAHSIERRMHTSDPEGIVRLTTTDGLALDFINKAVAAIQQSYPKI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L +    +D++++  D AIR  +P  S ++  ++L   ++  +A+ HY+     P  
Sbjct: 119 CIELSISTSTLDVNLNETDIAIRTIRP-NSPNVKTKRLAQWNVGLFASKHYISTHGYPND 177

Query: 183 IQELDKHNLITFG---------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
                 HN++ +           L+ KC  + +  A              QVNS   +  
Sbjct: 178 NDNFKNHNVVIYQPGVTHKQNETLVGKCRNNAHITA--------------QVNSSAILKD 223

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIM 259
               G+GI  LP Y  K++ NLVR+ 
Sbjct: 224 LIEQGAGIGELPIYYQKESSNLVRLF 249


>gi|83719170|ref|YP_440864.1| LysR family regulatory protein [Burkholderia thailandensis E264]
 gi|167617658|ref|ZP_02386289.1| LysR family regulatory protein [Burkholderia thailandensis Bt4]
 gi|257140481|ref|ZP_05588743.1| LysR family regulatory protein [Burkholderia thailandensis E264]
 gi|83652995|gb|ABC37058.1| LysR family regulatory protein [Burkholderia thailandensis E264]
          Length = 320

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 142/293 (48%), Gaps = 16/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   +  +   Y D+ +++
Sbjct: 66  YERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAQRYADVTVEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +
Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPTTIAD 185

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241
           L  H+ I       L+   + D    + V      P    + VN +L  ++  VL G+GI
Sbjct: 186 LQHHSFIRREPNETLLDAAISDVAAASRV------PLSGNVIVN-HLEGLRVAVLDGAGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           ALL   +V ++     LV ++ D + P    +Y  Y      + K+++F +F+
Sbjct: 239 ALLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFL 291


>gi|197121008|ref|YP_002132959.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196170857|gb|ACG71830.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 297

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 128/283 (45%), Gaps = 18/283 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D LR+F  VA   SFT AAE L LS++ +S  +  LE E+G +L  R  R + LT  
Sbjct: 1   MNLDALRMFVKVAELASFTRAAEHLGLSKARVSAAVRDLELELGSQLLQRSTRAVRLTTS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G  L         +L T   EL      PS   G++R+     L ++L    L   L  +
Sbjct: 61  GEAL----LARARQLVTEADELAGMFRAPSALGGRVRVDMPQSLARSLFIPRLPALLDAH 116

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++++QL   ++ +D+  +  DC +R+ K + +S L+ R+L  + +   A+P YL+    
Sbjct: 117 PNLEVQLSTTDRRVDVIREGFDCVLRIGK-LDASGLVARRLGEMPLMNCASPGYLRRHGT 175

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+++LD+H ++ +          F +     R    P  + + VNS  S    C+ G 
Sbjct: 176 PRSLEDLDRHLVVHYASRFGVGAPGFEYQDGA-RYRERPMRALVTVNSSDSYQAACLAGL 234

Query: 240 GI------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEA 276
           GI       +LP     D   LV ++         V   +P  
Sbjct: 235 GIIQAPRAGVLPGIAAGD---LVEVLPQHAAEPLPVSLVHPHG 274


>gi|83945620|ref|ZP_00957966.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850986|gb|EAP88845.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 303

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 129/297 (43%), Gaps = 27/297 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VA + SFT AA +L  SQS++S+ +  LE  +G++L  R  R +  TE G
Sbjct: 5   DLSDLMTFLAVAEARSFTKAAVRLGTSQSAVSQVVRRLEDRLGVRLLTRTTRNVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++E     L +    PSG LRI  T D   +LL+  + + +  +PDI 
Sbjct: 65  RRLAERLRPALDEIEAELETLDQIRSTPSGLLRITATYDSAHDLLEPVVSQLMQDFPDIA 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D + +DI+ D  D  +RL + + +  +       + M    AP Y      P + 
Sbjct: 125 VEISVDARLVDIAKDGFDAGVRLGEQVDADMIAVPIGPDLSMRVAGAPAYFDRAGRPQTP 184

Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-----MQ 233
            EL  H+ I     T G L       + W    D   G P +S      Y S      ++
Sbjct: 185 HELTDHDCINLRLQTLGGL-------YAWEFEKD---GRP-LSVRVEGRYTSDDPALNIK 233

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
             + G G+  LPD ++  +     L  ++ED   P    +  YP   + T    AFR
Sbjct: 234 MALKGGGLVCLPDQLLTGHLKTGALETVLEDWCPPFPGYHLYYPSRRQMT---PAFR 287


>gi|83747096|ref|ZP_00944140.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83726226|gb|EAP73360.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 326

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 38/287 (13%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   G+F  AA +L L+ SSIS+ +  LE E+G+ L +R  R L+LTE G   
Sbjct: 34  RMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLTEAGRVY 93

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   + V H     Q ++     +P+G+LRI    +L    L   L++F+  +P + ++ 
Sbjct: 94  YEECANVVHAAARGQQKVAALRDEPAGELRITAPSELAHQHLVPALRDFIAAHPRLAVRF 153

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ID+     D A+R+ + ++ SSL+ R++        AAP YL+    P +    
Sbjct: 154 ELGDEKIDLVEHRVDLAVRIGE-LRDSSLVARQIAWFDELICAAPAYLERTGPPTT---- 208

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----------LQVNSYLSIMQYCV 236
                       P+ + D +WL  +  P+GEP              L+V+  L+  Q   
Sbjct: 209 ------------PQALADLDWL--IFTPLGEPAFVHLRNTQGHEVRLRVHGRLATNQAQT 254

Query: 237 L------GSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYP 274
           L      G G+A LL   I  +     LV ++ D     F VY   P
Sbjct: 255 LKALALDGHGVARLLKADIGTELAQGRLVPLLPDWRLAGFGVYAITP 301


>gi|90422306|ref|YP_530676.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104320|gb|ABD86357.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 301

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 122/250 (48%), Gaps = 7/250 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF   A++L LS++++S+ ++ LE ++G +LF R +R L LT+ G
Sbjct: 6   DFEGLAIFAKVVELRSFAATADELVLSKATVSKAVTRLEQKLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +    E  + E    S  P G +R+A  +  G  ++   L EF+  YP++ 
Sbjct: 66  HRLAERATRLLADGEAAENEALAQSGAPRGLVRLAVPMTFGVKVIAPLLPEFMQNYPEVA 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D  IR+   +  SSL+ R+L  +     AAP YL     P   
Sbjct: 126 IDLHLSDATVDLIGDGFDAGIRIAT-LPDSSLLARRLCAMPRFTVAAPSYLATYGRPTHP 184

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             L  H  + +  L  P      N      D  +  P    L+VN+  +++   + G GI
Sbjct: 185 MHLAAHRCLGYAYLSTPNTWHYTNAAGEQADVRLSGP----LRVNNGEALLPALLAGLGI 240

Query: 242 ALLPDYIVKD 251
           A LP++IV D
Sbjct: 241 ADLPEFIVGD 250


>gi|330971067|gb|EGH71133.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 297

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 128/285 (44%), Gaps = 6/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLQVARDQSFTKAATELGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQ++
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q+
Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  I            + W      R +          NS + ++   + G G+A +
Sbjct: 187 LTQHTCINIRHSPNGSC--YAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAYV 244

Query: 245 PDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           PD + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 245 PDSMAEPHIASGRLREVLVDWSPYFEGFHLYYPNRRQASPAFSAF 289


>gi|312884729|ref|ZP_07744430.1| putative transcriptional regulator protein, LysR family [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367642|gb|EFP95193.1| putative transcriptional regulator protein, LysR family [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 292

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 128/287 (44%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V ++GSF  AA  L +S+ ++S QI  LE  + +++  R  R L +T +G K+ 
Sbjct: 9   MAVFAAVVKTGSFNKAAALLQISRPAVSEQIRKLEDLLKVRVLQRSTRRLNVTPEGEKVL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   V   L  T+  L +  ++  GK+R+  T D+  N L   +  F   YP I+   +
Sbjct: 69  PLAQSVLESLMMTEKVLLQDQLR--GKIRLTATYDIAHNWLLPRITTFRQQYPHIEFDFL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D AIR+   +     + RKL    +  YA+P+YL  C +P++ + L 
Sbjct: 127 ISDEKVDLIKNQIDLAIRV-SSMDELGFVARKLFEDKLEVYASPNYLNRCAKPVTTESLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +    L      +        +    P   C   NS +      +   G+ LL D 
Sbjct: 186 EHKWVVINQLTNGG--EITLYNDSQKVRFSPEDYC-STNSPILSRDMILADMGLGLLIDN 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           I K    +  LV+++       F+ Y  YP       + +   NF+ 
Sbjct: 243 IAKPHIRSQQLVKVLPGWQAQHFSCYLLYPSKSYLPRRTQVLINFLL 289


>gi|23499863|ref|NP_699303.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|23463435|gb|AAN33308.1| transcriptional regulator, LysR family [Brucella suis 1330]
          Length = 297

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE G   
Sbjct: 6   RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+I + +
Sbjct: 66  YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFTDAVIGQSLIDFCLAHPEIVLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P   ++L
Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQRPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I   D   +   ++++       +  P    +++NS ++     + G G  +LP 
Sbjct: 185 TDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCMLPA 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +I +D      L+  +++ I     +Y  YP       K++A  +F+
Sbjct: 243 FIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289


>gi|119387016|ref|YP_918071.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377611|gb|ABL72375.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 303

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 124/271 (45%), Gaps = 7/271 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V  +GSFT A E+L +S   +S+ ++ LE + G+ L  R  R L+LT  G +
Sbjct: 5   DGIRAFVAVVDAGSFTRAGERLGISNKLVSKYVAALEGQQGVTLLNRTTRALSLTPAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V   +E    +        +G+LRI   +  G+       ++F  ++P I I 
Sbjct: 65  YLTAARRVLAAVEELDAQAHAEEGALTGRLRITAPVAFGEMFATTLTRDFARVHPGIDID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A+R+ + +  SSLI R++        A+P YL     P   ++
Sbjct: 125 LNLSDRYVDLAAEGFDLALRIGQ-LPDSSLIARRIGQTETWVVASPAYLAAHPRPNRPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +   D   +      +L    + +  P    + VNS  ++ +  + G G+AL+P
Sbjct: 184 LRDH--VNIRDSNAQNPGRAVFLIE-GKAVSVPLPGRITVNSAQAVRRLVLEGEGVALIP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
            ++V  +     L R++   + P   +   Y
Sbjct: 241 SFVVARDVAEGRLERLLPGFVRPQLDIQALY 271


>gi|126739601|ref|ZP_01755293.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126719247|gb|EBA15957.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 313

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 121/252 (48%), Gaps = 11/252 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R LT TEQG  
Sbjct: 5   DNIRTFVRVYELGSMSAAGRDLRISPAVTSARISQLEDYLGVRLFQRTTRNLTATEQGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   ++  + ++   +  P G L +A  +  G+ L+   +  FL  YP+I ++
Sbjct: 65  FYTGAVSVLDAVDQAEAQVMHLTDTPRGTLFVAAPLGAGRRLVAPEVPTFLKEYPEINMR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D A  L +P + S+L  RK+        AAP YL    +P S ++
Sbjct: 125 LRMSDRSVDLTTEGLDLAFFLGQP-EDSNLRIRKIADCQRVLCAAPEYLARRGKPESGED 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           L  DKHN +      P   E F W+   +   G  R +     + +    +  + + G G
Sbjct: 184 LVKDKHNCLNL--RFPGASE-FQWMLQTEE--GPQRFAISGRYECDDGDVLTDWALSGEG 238

Query: 241 IALLPDYIVKDN 252
           +AL P + V ++
Sbjct: 239 VALKPVFEVAEH 250


>gi|113866914|ref|YP_725403.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113525690|emb|CAJ92035.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 302

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 17/296 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD   + VF   A  G+ + AA  L LS SS S ++  LE  +G +L +R  R L LT
Sbjct: 1   MHFDLLDIAVFVRAAALGNLSAAARDLGLSTSSASARLGRLEQSLGSRLLHRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +      ++          +  S+ +P G+LR+      G+  +   L EFL  YP
Sbjct: 61  ADGERFLPHAEQLLATAALASASVGTSAERPRGQLRVTAPASFGRQHVSPALPEFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + L L ++ I +     D A+R+   +  S+L+ R L   H    A+P YL+    P
Sbjct: 121 DIALDLRLTDQVIGLVDASIDVALRMGV-LPDSTLVARALAPSHRVICASPAYLQRHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
               +L +HN +   D   +    FN       P+GE  +     L+V++   +    V 
Sbjct: 180 RHPDDLRQHNCLVLAD---QSAWRFN------TPLGETVVHVRGNLRVDNGEVLRDAVVA 230

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G GI+L   + V     +  LV ++++  + P+ +++  +P       K +AF +F
Sbjct: 231 GVGISLKSTWDVGPLLRSGALVTVLDEYPVVPAVSIWAVFPSRHLVPPKTRAFVDF 286


>gi|170751628|ref|YP_001757888.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658150|gb|ACB27205.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 315

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 26/298 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F  V   G+ T AA     ++ S+SR+IS LE  +G  L  RH R ++ T +G  
Sbjct: 13  DDLRAFCAVVDLGTVTAAAASRGETKGSLSRRISRLEAALGAILIARHPRAVSPTAEGLA 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E    L+      +++   P+G LR+ T++D G  L+ G +  F   YP I + 
Sbjct: 73  FYAKVQESLALLDEAAETARDARTVPAGHLRVTTSVDFGIELMPGIVASFRRAYPQITVD 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I  +  +D++ +  D A+RL    ++   ++LI R  V +    YAAP YL     P S
Sbjct: 133 MINTDARLDLAANRIDLALRLGDVEETGYRAALILRLWVGL----YAAPDYLARRPAPTS 188

Query: 183 IQELDKHNLI-------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           +  L +H+LI         G ++         +A             ++ + + ++++  
Sbjct: 189 LAALPEHDLILSRERPGALGIMLSDGQGRTEQVALS---------PAVRASDFAAVLRLT 239

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G+GI  LP  +      N  LVR++    T    +        +   +++ FR  +
Sbjct: 240 LAGTGIGHLPSAVAAGSVANGALVRVLAPWATAGGALRAVSLAGRELPARVRVFREHV 297


>gi|113868195|ref|YP_726684.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526971|emb|CAJ93316.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 317

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R ++LT +GS  
Sbjct: 6   QLETFVSVASRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRKISLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + L   +  +    VK SG LR+      G+  +   +  F+  +PD+ I L
Sbjct: 66  LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGYGRKHVAPLVPLFIESHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCAIRL   +  SSL+  +L        A+P YL     P++ ++L
Sbjct: 126 DLSDRVVDLVNEGFDCAIRLGD-LPDSSLVSIRLAETRRVVVASPEYLARAGRPMAPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +HN + FG           W+   + R +       ++ +    + ++C+ G+G+A   
Sbjct: 185 QRHNCLAFG---ASANVQRGWVFQEEGRAVTVKVGGTMECSDGAVLHEWCLQGNGLAWRS 241

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            + V     +  LV ++++   P   ++  +P+
Sbjct: 242 WWEVGSEIASGRLVTVLDEFQAPPIGIHAVFPQ 274


>gi|119946301|ref|YP_943981.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
 gi|119864905|gb|ABM04382.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
          Length = 293

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 134/298 (44%), Gaps = 26/298 (8%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V ++GSFT AAEQ   S+S +S+Q+S LE  +GI L +R  R + LT+ G   +  
Sbjct: 8   AFLAVVKTGSFTRAAEQTKTSKSRVSQQVSSLEKTLGITLLHRSTRKIRLTDAGDAYYSE 67

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDL-GQNLLQGNLKEFLLLYPDIQIQLIL 128
            S     LE  +  L E   + +G +R+ +   L  + +L   +  F+  YP ++IQL  
Sbjct: 68  CSRAAAILEQARKNLNERQDQVAGLIRLNSVGGLFSEKMLAPAVIAFMKQYPQVEIQLDF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +  +D+  +  D  +R+ + + +SSLI RKL+ I     A+P ++K   +P   Q+L +
Sbjct: 128 SSAQVDVIAESVDLVVRMGQ-LNNSSLIARKLMEIKTDVVASPAFIKKQGKPNHPQQLSQ 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSGIA 242
            N +        C     W     +  G  +   + V   LS     +L      G GI 
Sbjct: 187 FNCL--------CGSIRKWHF---QHKGLEKAQDVTVTGSLSSANGHILSMAAIEGLGIV 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            L +           L+ + E    P+  V   YP+    T +++ F +F+     DW
Sbjct: 236 RLNELYTHQYLQTGQLIPVFEQWHIPAVPVSLIYPKVRYKTKRIQVFVDFLI----DW 289


>gi|73537962|ref|YP_298329.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72121299|gb|AAZ63485.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 304

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 127/272 (46%), Gaps = 6/272 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W ++ +F   A  GS + AAE L +S ++ SR +S LE  +  +L  R+ R L LT+ G 
Sbjct: 4   WTEIELFVQTAEFGSISRAAESLEMSNAAASRYLSSLERRLSARLIERNTRRLYLTQVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R   E+  +++  + ++  + ++PSG L I  ++      L   + EF   YP + +
Sbjct: 64  QYFRRCKELLAEMKEAEADVSAAVLEPSGTLTITASLSFAMKHLAPLVPEFTTRYPKVNV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++  N+  DI     D AIR R+    S+L  R+L        A P YL     P S++
Sbjct: 124 NVLAANRYYDIMDSGTDLAIRTREFEPDSNLTVRRLAQTRRVLAATPRYLDTHGIPRSVE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H+++ +         + ++    ++ +   R S ++ N    +    + G GI + 
Sbjct: 184 ALADHSMLIYS--YANRPNELSFTRGDEKQVVTVR-SKMESNDGQVLRAAALEGMGILVQ 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           P YI+ D+     L+ +++D   P  T+   +
Sbjct: 241 PKYILYDDIVAGRLIPVLDDWDLPRLTINIAF 272


>gi|294011553|ref|YP_003545013.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292674883|dbj|BAI96401.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 297

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 16/295 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  V    SFT AA+ L +S++++S+ ++ LE  +   LF R +R L LTE G
Sbjct: 5   DFEAWAMFAAVVEHRSFTDAAKALSVSKATVSKAVTRLEQHLDTSLFSRTSRRLALTESG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +  + +  +   ++ + + SG +R+   +  G   +   + EF    P + 
Sbjct: 65  RRLAEHAARILSEGQAAEEAARDETAELSGTVRLGAPMTFGLLRIAPLVAEFTKQNPHVD 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  ID+     D  IR+   +  SSL  R+L  + +H  A+P YL     P   
Sbjct: 125 IDLHLSDARIDLVDMGLDATIRIAD-MPDSSLRARRLADVTLHVVASPAYLAERGRPTHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLG 238
            +L  H+ + + +     +  F+         G+  +     + L VNS  +++     G
Sbjct: 184 SDLGDHDCLCYSNTPTPDVWRFSG-------PGQQNVVVQVRARLTVNSGEAMLPALRTG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA LPD+IV +   +  L  I+ D   P F ++   P +     ++ A  +F+
Sbjct: 237 VGIARLPDFIVGEAIASGELEEILVDWRPPPFGIHLVTPPSRLRPARVDAVLDFL 291


>gi|170736161|ref|YP_001777421.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818349|gb|ACA92931.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 303

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 131/294 (44%), Gaps = 15/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G +  
Sbjct: 12  LVAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSG--KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              ++V+H L T   E     +KP G  +L IA +  +    L   L +F   YP+I+++
Sbjct: 71  --AAQVHHLL-TQCAEATHDVMKPYGDLELTIACSSGVAVLWLTPRLPDFRATYPNIKLR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   +
Sbjct: 128 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L    L+   D   + M    W  L  VDR   +P+   + +NSY  I+Q  +LG G++L
Sbjct: 186 LANETLLRLEDGQRQWMSWSEWFDLNDVDRQKAQPQD--ITINSYPQIVQMTILGQGVSL 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              Y++    D   LVR+ E   +     Y   P         + F  ++F +A
Sbjct: 244 GWRYMIDACIDAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWLFEQA 297


>gi|53803391|ref|YP_114870.1| LysR family transcriptional regulator [Methylococcus capsulatus
           str. Bath]
 gi|53757152|gb|AAU91443.1| transcriptional regulator, LysR family [Methylococcus capsulatus
           str. Bath]
          Length = 313

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 12/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA++GSF  AA++L LS++  ++ +  LE  +G++L  R  R L+LTE G      
Sbjct: 9   VFTKVAKAGSFAAAAKELGLSRAMATKHVMQLENSLGVRLLNRTTRHLSLTEVGMVYLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   LE T++ +     +P G L++      G   L   +  +L +YPD+ ++L+L 
Sbjct: 69  CLQILDDLEETELAVTRLQTEPRGTLKLNAAPFFGAYHLAPAIAAYLEIYPDVNVELVLQ 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
              +D+  +  D AI L + ++ SSLI RKL T       AP Y +    P + ++L KH
Sbjct: 129 AGYVDLVEEGFDLAIHLDE-LRDSSLIARKLGTSQRIVCGAPSYFEKRGVPKTPEDLKKH 187

Query: 190 NLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           N ++   L P+    F   +  +TV +  G      L+ +S  ++    + G G+ LLP 
Sbjct: 188 NCLSNSSLPPRDQWQFVSQDGKSTVIKVSG-----TLEASSADALRMAAISGLGLVLLPT 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+V  +     L  ++ D +  +  ++  YP     + K++ F +F+
Sbjct: 243 YMVGQDIRKGRLQAVLTDYVPAAADIHAVYPHRKHLSAKVRTFVDFL 289


>gi|78060495|ref|YP_367070.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965045|gb|ABB06426.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 307

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 125/264 (47%), Gaps = 16/264 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  V R+GSF+ AA +L +  +++SR+I  LE ++G +L +R  R L  + +
Sbjct: 2   LDLNDLALFVQVVRAGSFSEAARRLRMPANTLSRRIDQLEGQLGTRLLHRSTRKLAPSTE 61

Query: 63  GSKLHRVTSEVYHKLETTQIE-LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G  L    +    ++   +IE L     +PSG +R+     L +      L EF   YP 
Sbjct: 62  GQALFERYAPALDRI--FEIERLHADGQEPSGTVRVTAMAGLFEIFRLEWLAEFYARYPQ 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I  +LD+   D+  +  D A+R+      S  + R++    M   A+P YL+    P 
Sbjct: 120 ISIDFLLDDTPSDLIGERIDLALRMGIETGGSFRV-RRIAPGTMILAASPAYLERRGAPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           + +EL  H+ +T      + M    W   +  P G   IS      VN    ++Q C+ G
Sbjct: 179 TPRELADHDCLTVSGRQGRAM----W--RLQGPRGTQEISIDSRFSVNDMRVVVQACIAG 232

Query: 239 SGIALLPDYIVK---DNPNLVRIM 259
            G+ALLP  + +   +   LVR++
Sbjct: 233 LGVALLPQLLAEPGIEQGKLVRVL 256


>gi|39934791|ref|NP_947067.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39648641|emb|CAE27162.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           CGA009]
          Length = 305

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 134/300 (44%), Gaps = 14/300 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA    F  AA +L LS S+++R ++ LE  +G +L  R  R + LT+ G++
Sbjct: 5   DTMTAFVAVADLQGFAPAARKLGLSPSAVTRMVAALEERLGTRLLQRTTRSVALTDTGAR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +E          V PSG+L ++  +  G+  +   L ++L  YP++  +
Sbjct: 65  YLERMRRILADIEEADTSAAAERVTPSGRLVVSAPVGFGRRHVAPLLSDYLRRYPEVTGE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  I++  D  DCA+R+   +  SSL+ R+L  +     A+P YL     P    E
Sbjct: 125 LRLSDLMINLVEDGVDCAVRIGH-LSDSSLVARQLGAMRRIVVASPAYLAARGVPAMPAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           +  H++I FG    +      W   VD    + RI+C   L  N     +     G G+ 
Sbjct: 184 IATHDVIHFG----QTGAPVGWHFVVDGR--DVRIACTPRLVSNVADVAILDAERGGGLT 237

Query: 243 LLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +  Y   D     R   ++ +   P   +   YP +   + K++AF + +  +  DW+F
Sbjct: 238 RVLAYQAADAIAAGRLQIVLANYEVPPLPIAIVYPTSRLLSAKVRAFID-LAAETSDWRF 296


>gi|330811566|ref|YP_004356028.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379674|gb|AEA71024.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 322

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 134/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT AA QL  + ++ISR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAEAGSFTAAAAQLDTTTANISRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ T   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILAYVEEAEAEASDAHARPAGQLKVHTMTGIGQHFVIDAIARYRKTHPDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L N+  DI  +  D +I L   +  S  + ++L   +    A+P Y+K    P    +L
Sbjct: 126 TLANRVPDILDEGYDVSIVLASELPDSGFVSQRLGITYSIVCASPAYVKASGCPQKPGDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+   +    W+   D P G+  +    S   VNS  ++      G G+ 
Sbjct: 186 LNHACL---RLVSPVIPLEKWV--FDGPEGQEMVTINSSPFLVNSADAMKTAITSGMGVG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y   +   N  LVR+M +  +    +Y  YP       K+K +  ++
Sbjct: 241 VLPVYAAIEGLRNGTLVRVMPNYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|319763439|ref|YP_004127376.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330824314|ref|YP_004387617.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317118000|gb|ADV00489.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329309686|gb|AEB84101.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 318

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 144/311 (46%), Gaps = 36/311 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V R   F  AA++L  S + +S++I  LE E+G+ L +R  R + +T+QG +
Sbjct: 25  DDLRVFCTVVRKAGFAAAAQELAASPAYVSKRIRLLEQELGVPLLHRTTRRVAVTDQGER 84

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +   ++    E+  +  +P G LR++++   G+N++   L   +  +P +Q++
Sbjct: 85  VFHWAQRILDDMDQLLQEVAVTRREPRGLLRVSSSFGFGRNVVAPMLSRLVQRHPGLQVR 144

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R+L   H    AAP YL     P S  E
Sbjct: 145 LEVFDRLVDVAGEGFDLDVRVGDEI-APHLIARRLADNHRVLCAAPGYLARRGTPRSPAE 203

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------------LQVNSYLSIMQ 233
           L  H+ +   +               D P G  R+              L  N+   ++Q
Sbjct: 204 LPAHDCLVIKER--------------DHPFGVWRLRAGAVEQSVKVTGPLSANNGEMVVQ 249

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
           + V G GIAL   + V  +    R+++  + P +     ++  YP  L+ + K++    F
Sbjct: 250 WAVDGCGIALRSLWDVGAHLEAGRLVQ--VLPEWRQEANIWAVYPTPLERSAKVRVCVEF 307

Query: 290 I---FLKARDW 297
           +   F + R W
Sbjct: 308 LQEYFGRQRPW 318


>gi|222083038|ref|YP_002542403.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221727717|gb|ACM30806.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 296

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 142/293 (48%), Gaps = 15/293 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LRVF  VA +G  T AA +L  S+S +SR ++ +E  +G +L  R  RG  LTE 
Sbjct: 1   MDIEDLRVFVEVADAGGITSAARRLGASKSMVSRALTRIEGALGAQLLARTTRGAGLTEA 60

Query: 63  GSKLHRVTSEVYHKLETT-QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G+      + V  +++T  +  L +  ++  G+LRIA  +  G       L +    +P 
Sbjct: 61  GALFRDHAARVCAEIDTAREAILPQGDLR--GRLRIAVPLTSGPVHFAPVLAKMARHHPQ 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QIQ    ++  D+ +D  DCAIR+   ++ S+LI +++  I+    A+P Y++    P 
Sbjct: 119 LQIQADYSDRFADLIVDGFDCAIRV-GALRDSNLIAKRVGQIYGKLVASPDYIRLHGSPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +++  H  +   +   + M D   + TV +P G       + ++ +++      G GI
Sbjct: 178 TPEDIASHQALVGAESW-RFM-DGEKIVTV-QPQGR-----FRTDNGMALASAAAEGLGI 229

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A LPD + +D   +  LV IM     P   VY   P +   + K++    F+ 
Sbjct: 230 AWLPDCVTRDYLASGALVPIMTRFPLPIGGVYVVRPPSPHPSRKVRILSEFLI 282


>gi|292491839|ref|YP_003527278.1| LysR family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291580434|gb|ADE14891.1| LysR substrate-binding protein [Nitrosococcus halophilus Nc4]
          Length = 315

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 136/305 (44%), Gaps = 38/305 (12%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V   G+ + AA  L  ++ SISR+IS LE  +G  L  R  R ++ TE+G  
Sbjct: 13  EDIRAFCAVIEFGTVSGAARTLGETKGSISRRISRLERRLGTALLARTPRAVSATEEGLA 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E    L       ++S   P G LR+   IDLG ++L   + +F  LYP I ++
Sbjct: 73  FYAKAREALSLLADAAEGARQSRSVPQGHLRVTAPIDLGVDVLPSLVVKFRALYPQITVE 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK--LVTIHMHAYAAPHYLKNCREPLSI 183
           L+L +  +D++    D A+R   P +   +  R   ++  H+  YA+P YL         
Sbjct: 133 LLLTDVALDLAAHRIDLALRA-IPGELPDMGYRASTVIGFHIGLYASPAYLA-------- 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---------------SCLQVNSY 228
                HNL T    +P+ + +++W+A  +  IG  ++                  + + Y
Sbjct: 184 ----AHNLPT----MPQALVEYDWVARQEG-IGAAKLVLTDRRGRAVEVSTRPVARASDY 234

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            S+ +  + G GI  LP  +   +    +LV ++      +  +Y      L+   +++ 
Sbjct: 235 ASVHRIILAGGGIGPLPSMVAAASLAGGSLVPVLPGWAVAAGKLYAISLSGLEAPARVRL 294

Query: 286 FRNFI 290
           FR FI
Sbjct: 295 FREFI 299


>gi|241765628|ref|ZP_04763582.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241364536|gb|EER59608.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 307

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 142/300 (47%), Gaps = 23/300 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R +  V  +GSF  A +   LS+ ++SRQ++ LE  +G +L  R  R L++T++G   +
Sbjct: 7   MRTYVAVVDAGSFVGAMDATGLSKPAVSRQVADLEAALGGRLLQRTTRRLSMTDEGRTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   +E    E+  S+V+  G+LRI   +  G   L      F    P + + ++
Sbjct: 67  QRCKDILQAVEEANAEVAASTVQAHGRLRIGAPLTFGVIHLAPLWGRFAAENPQVTLDIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  +R+ +P+  S+LI R+L    M   A+P YL     P    +L 
Sbjct: 127 LSDRVVDLVEEGYDLVVRIGRPM-DSNLISRELARSGMALCASPGYLARRGIPEHPHDLI 185

Query: 188 KHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGS 239
           +H++I+     FGD          W  + + P G+  +   S +  N+  +     +   
Sbjct: 186 RHDVISYSYSRFGD---------EW--SFEGPQGKVIVHVNSRIHANNGDTCRVAALADQ 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L PD++V +   +  L++++ D      ++   YP   +   K++   +F+    RD
Sbjct: 235 GVILQPDFLVHEDLRDGRLIKLLPDFRLHELSIQALYPTRKQLPLKVRKLIDFLVEALRD 294


>gi|171322415|ref|ZP_02911229.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171092264|gb|EDT37643.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 313

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD+ ++L
Sbjct: 66  LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPDVHVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+     P +  +L
Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVDAHGAPHTPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
           ++H  +  G + P    D  W   +  P G+  I       +VN   ++      G GI 
Sbjct: 186 EQH--VCLGMVAPGFHFD-EW--ALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP Y       + ++VR+M +  +    +Y  YP       K++ + +F+
Sbjct: 241 GLPLYSAIGGLRSGSIVRVMPEYRSHLMNIYALYPSRQYLDAKIRTWVDFL 291


>gi|295699276|ref|YP_003607169.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438489|gb|ADG17658.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 336

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 133/298 (44%), Gaps = 24/298 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFVRVVEAGSFTAAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTTAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            + + ++   ++  + E   +  +P+G LR+ +   +GQ+ +   +  +  LYPD+ ++L
Sbjct: 66  LKRSQQILADVDIAEEEASCAHERPTGALRMHSFASIGQHYVLPAISRYRELYPDVTVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    AD A+     + +S L+   L T      A+P Y++    P    +L
Sbjct: 126 TLSQRMPDLFEGSADVAVIGASMLPNSDLVSFPLGTTFSILCASPAYVRAHGAPQEPGDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H  +    L         W  T+D P G   +     + VN   S++     G GI +
Sbjct: 186 AHHECLI---LHTPAFPPHEW--TLDGPNGSELMEVDGPVHVNIAESLIVAIREGMGIGM 240

Query: 244 LPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +P Y     ++D   LVR++ +      TVY  YP            R FI  K R W
Sbjct: 241 VPLYAAISGLRDG-TLVRVLPEYTLQKTTVYALYPS-----------RKFIDAKTRTW 286


>gi|33597131|ref|NP_884774.1| LysR family regulatory protein [Bordetella parapertussis 12822]
 gi|33566582|emb|CAE37839.1| LysR family regulatory protein [Bordetella parapertussis]
          Length = 302

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 136/290 (46%), Gaps = 13/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D+ RVF  VA  GSF  AA  L L ++S+S  +  LE +VG +L +R  R + LT  G+
Sbjct: 4   FDQYRVFAQVAEMGSFIKAAHALELPRASVSAAVQQLEGQVGARLLHRTTRQVRLTADGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +  ++E      Q    + +G+L I     + + LL   L   L  +P +Q+
Sbjct: 64  QLLERIRPLLAEVEDIDQLFQACQRQAAGRLNIDVPSRIARRLLAPALPALLRRHPRLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+  +  DCA+R+   + SSSL+ R L ++ +   A+P YL+    P    
Sbjct: 124 ALGSGDRAIDLVREGVDCAVRI-GVLHSSSLVVRPLGSLALINCASPAYLREHGAPGHPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239
           EL   +  T G   P+      W  AT   P G   +    S + VN+  S +  C+ G 
Sbjct: 183 ELAAGHW-TVGYASPQTGRALPWEYAT---PRGGTSLVEAASRVVVNNAESYIACCLAGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+  +P Y V+   D   LV +M D    S  V   YP   + + +L  F
Sbjct: 239 GLIQIPRYDVQHLLDGGQLVEVMPDQRAASMPVALLYPHRRQRSRRLAVF 288


>gi|87118749|ref|ZP_01074648.1| Helix-turn-helix, Fis-type protein [Marinomonas sp. MED121]
 gi|86166383|gb|EAQ67649.1| Helix-turn-helix, Fis-type protein [Marinomonas sp. MED121]
          Length = 295

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 137/281 (48%), Gaps = 23/281 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ +F  VA   SFT AAE L + +++++  I  LE+ +G++L  R  R + LT  G 
Sbjct: 4   FKEMLIFSRVAERNSFTLAAEDLAVPRATVTNGIKRLESRLGVRLLERTTRQVRLTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVK--PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           + +    ++  +LE    E++ S +K  P G LR+     L ++ +   L +FL  YPDI
Sbjct: 64  QYYEKCIKLLGELE----EVENSFLKHSPKGVLRVNLQGTLAKHFVIPRLPDFLKRYPDI 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I +  D++ ID+  +  DC +R  + +Q SSLI + L  + +   A+P YL     P  
Sbjct: 120 KIHIAEDDRLIDLVKEGIDCVLRAGE-LQDSSLIVKPLTQLEIVTVASPEYLDQYGTPKD 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV------ 236
           +  L  HN I +   +     +F++L        + ++  + +NS +++    V      
Sbjct: 179 LNALQGHNGIAYSLDVKARPSEFDFLV-------KNKLVSVNLNSLVAVSGAEVYTASAK 231

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            G G+  +P Y ++   +   LV I+     PS  V   YP
Sbjct: 232 AGLGLIQVPKYRIRHELETGELVPILTQFSVPSMPVSALYP 272


>gi|327188651|gb|EGE55859.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 299

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 138/297 (46%), Gaps = 13/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G F+ AA +L++S + +   +  LE  +G++L  R  R ++LTE G   +
Sbjct: 7   LAVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTETGKYYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +S++  +L+         S  P G L++ T+  + + LL     E++ LYP I +   
Sbjct: 67  ERSSQILAELDEADRTASALSTTPRGTLKVYTSGSIVRFLLP-VFSEYMELYPSISVDFS 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  + +D+  D  D  IR   P   SSLI RKL         +P Y+ +   PL   E+ 
Sbjct: 126 VGERMVDMIEDGYDLVIRTLPP--DSSLIARKLTPWRHMLVCSPAYVDSHPLPLKPAEIA 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246
            HN + +    P   +++ +     RP    +I    V++   ++++  L G G+ L P 
Sbjct: 184 DHNCLQYA-YYPYG-DEWRFEDGDGRP-ESVKIGGNVVSNNAEMLRFLTLNGRGLFLAPS 240

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
           ++V D+     L+RIM D     FT+   YP       K++ F + +   F + R W
Sbjct: 241 FVVFDDIAEGRLIRIMPDYRPVEFTINAVYPNRSHLPTKVRLFIDLLAERFAEHRKW 297


>gi|322614267|gb|EFY11198.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621669|gb|EFY18522.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624530|gb|EFY21363.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628861|gb|EFY25644.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633412|gb|EFY30154.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636012|gb|EFY32720.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639605|gb|EFY36291.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646904|gb|EFY43407.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652205|gb|EFY48564.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654716|gb|EFY51035.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658937|gb|EFY55190.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664496|gb|EFY60690.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668255|gb|EFY64412.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673765|gb|EFY69866.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677826|gb|EFY73889.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681344|gb|EFY77376.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683746|gb|EFY79756.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193866|gb|EFZ79069.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200335|gb|EFZ85417.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202357|gb|EFZ87401.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205591|gb|EFZ90556.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210103|gb|EFZ95006.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216405|gb|EGA01132.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221153|gb|EGA05584.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226378|gb|EGA10586.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230742|gb|EGA14860.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234907|gb|EGA18993.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238946|gb|EGA22996.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241646|gb|EGA25677.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248207|gb|EGA32143.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251209|gb|EGA35082.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256093|gb|EGA39831.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263229|gb|EGA46767.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264269|gb|EGA47775.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271095|gb|EGA54523.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 304

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 145/297 (48%), Gaps = 24/297 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLH-LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++ +F  V  SGSFT AA      +++ +S  I  LE E+G+ L  R  R LTLT+ G  
Sbjct: 6   RMSLFIAVVDSGSFTAAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDAGVL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD++I+
Sbjct: 66  FYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDLRIR 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  +   D+  +  D AIRL     S   ++LI R  +       AAP +L   R P+S
Sbjct: 126 HMSSSHHADLIAERFDVAIRLGSLADSRYRAALISRFTIL----PVAAPQWL--ARHPVS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCV 236
             E          + +P  +    W  TV    G+       +   + V+S  S+M + +
Sbjct: 180 SLESLAQAEWIIHERLPTPLR---W--TVTNNHGQHSRLEISKAGKISVDSARSLMAFAL 234

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GSG+ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+
Sbjct: 235 AGSGVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFL 291


>gi|207725121|ref|YP_002255518.1| hypothetical protein RSMK03536 [Ralstonia solanacearum MolK2]
 gi|206590353|emb|CAQ37314.1| hypothetical protein RSMK03536 [Ralstonia solanacearum MolK2]
          Length = 308

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 136/290 (46%), Gaps = 32/290 (11%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE
Sbjct: 3   TMEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P+
Sbjct: 63  AGSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQYLTEPVCQALARFPN 122

Query: 122 IQIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +QIQ+ +  +  D ++  Y    + + + +  SSL+ R++V I    YAAP  L   R P
Sbjct: 123 LQIQVQISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAG-RAP 181

Query: 181 LSIQELDKHNLITFGDLIP-KCM---EDFNW---------LATVDRPIGEPRISCLQVNS 227
           L+          T  DL    C+   +D NW          A ++ PI +PR+  L  N+
Sbjct: 182 LA----------TPADLAGWPCLSGPDDANWGFRPAGASAAAPLEVPI-QPRLQTL--NA 228

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            + + +  V G G+A +   +     +   LVR++ D       VY   P
Sbjct: 229 EMRV-RAAVRGLGVARMARSVGDAEVETGRLVRVLSDYEPTPLRVYALMP 277


>gi|206563305|ref|YP_002234068.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039345|emb|CAR55310.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 315

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G   
Sbjct: 6   NMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD+ I+L
Sbjct: 66  LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHTQYPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P   Q+L
Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGVPARPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H  +T   L         W+  ++ P G  +I     +Q N+  S+      G GI +
Sbjct: 186 AAHACLT---LCTPAFPTHEWV--LEGPEGVEQIHVAGPVQTNTAESLALAIRDGIGIGM 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   D   +  LVR++   I     VY  YP            R F+  K R W
Sbjct: 241 LPLYSAIDALRDGTLVRVLPAHILQKMNVYALYPS-----------RRFVDAKVRTW 286


>gi|170691790|ref|ZP_02882954.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143074|gb|EDT11238.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 299

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 130/277 (46%), Gaps = 10/277 (3%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SF  AA +L LS S++ + +  LET +G++L  R  R +++TE G + +     +   L 
Sbjct: 18  SFVGAARRLGLSASAVGKSVVRLETRLGVRLLQRSTRRVSVTEDGERFYERCRRILDALT 77

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
             +  + +++  P G+LR+ T   +G   L   + EF+  YPD++++L  +++ +D+   
Sbjct: 78  DAETMMLQANAAPRGRLRV-TLPTIGYRFLLPVVPEFMQRYPDVELELDFNDRIVDVIAG 136

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D AIR    +  S L  R+L        A P Y      P    +L +H  I F    
Sbjct: 137 GFDAAIR-SGDLADSQLTARRLGPFRFVLCATPAYFAQHGVPRVPADLARHACIRF--RF 193

Query: 199 PKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---P 253
           P   +  +W    D+P        + L  N+  ++    VLG GI  +PD++V+D+    
Sbjct: 194 PTTGKLHDW-QFRDQPANFVASFPTVLTCNNMEALRGATVLGLGIGYMPDFLVRDDLAAG 252

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  +++  +         +P + + + KL+ F +F+
Sbjct: 253 TLRTVLDAHLKHEGQFSVLWPSSRQLSPKLRVFVDFL 289


>gi|300694407|ref|YP_003750380.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299076444|emb|CBJ35762.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 297

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 122/274 (44%), Gaps = 8/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR  SFT AA QL +S S++S  I  LET +GI+L  R  R ++ TE G
Sbjct: 5   NYHDLLAFLAVARERSFTRAAAQLGVSPSALSHTIRALETRLGIRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + +++     + E    PSG +RI  T    + LL   L + L  YPD++
Sbjct: 65  ERLLQSIAPRFEEIDAELAAVGELRDTPSGTVRITATDYTIRTLLWPKLSKVLHDYPDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D    DI  +  D  +RL   +    +  R    + M     P YL+    P + 
Sbjct: 125 VEFVTDYGLTDIVAERYDIGVRLGDTLAKDMIAVRIAPDLRMVIVGTPAYLETHPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W L    R I       L  N    I    + G G+A
Sbjct: 185 QDLTAHRCINL--RLPTHGGVYAWELKKGHREIQVRVDGQLTFNGIYEICDAALSGYGLA 242

Query: 243 LLPDYIVKDNPNLVR---IMEDVIT--PSFTVYF 271
            LP+ + + +    R   ++ED     P F VY+
Sbjct: 243 YLPEDLAQPHVAAGRLKWVLEDWFPTFPGFHVYY 276


>gi|260430570|ref|ZP_05784543.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260418599|gb|EEX11856.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 309

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 125/259 (48%), Gaps = 16/259 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+ +D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R L+ T
Sbjct: 1   MSY-FDNIRTFVRVYELGSMSAAGRDLRISSAVTSSRISQLEERLGVRLFQRTTRSLSPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +R  +E+   +E+ + ++   + K  G L +A  + +G+ L+   + +FL  YP
Sbjct: 60  EHGKSFYRGATEILEAVESAEAKIVNVTEKLKGSLYVAAPLGVGRRLIAPKVPDFLAEYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L L ++ +D++ +  D +  L +P + S+L  RK+  +     AAP Y+     P
Sbjct: 120 EVSVRLRLTDRKVDLTTEGLDLSFFLGQP-EDSTLRIRKIADVERLLCAAPSYIARRGMP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQ 233
                L  D H  +      P   E F W   ++ P G  R +      Y S     +  
Sbjct: 179 ADGDALIRDGHECLNL--RFPGAQE-FQW--RLETPEGPRRFAV--TGRYESDDGDVLTD 231

Query: 234 YCVLGSGIALLPDYIVKDN 252
           + + G GI + P + V ++
Sbjct: 232 WALSGQGIVMKPRFEVAEH 250


>gi|163760412|ref|ZP_02167494.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
 gi|162282363|gb|EDQ32652.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
          Length = 307

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 139/298 (46%), Gaps = 16/298 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++ +F  V   G F  AAE+  L+ S +S+ ++ LE  +G+KL  R  R L +T +G  
Sbjct: 8   DEIAIFVRVVERGGFAAAAEETGLTPSGVSKAVTRLEDRLGVKLLQRTTRRLMMTAEGEL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     ++   +E+T+ E+  +  KP G +R+       ++ L   L EF   YP+I + 
Sbjct: 68  LLARGRDILAAIESTEAEVMAARGKPRGTIRVNVGTAYAKHRLAPALPEFRERYPEIDLI 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + ++ +D+  +  D AIR   P+  SSL+ R+L        A+P YL    EP    +
Sbjct: 128 ISVADRRVDVIGEQLDVAIRT-GPLTDSSLVARRLGEATRVIAASPAYLAKFGEPKQASD 186

Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           L  H  +T   F  L         W   +D  +    I + +  ++   + +  + G GI
Sbjct: 187 LKHHICLTVTGFSRL-------SEWPLKIDGKVTPVAIKTAVSCDNADILAEMALAGMGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             L  +++ D   +  L  ++ D  ++ +  +    P   ++  +++AF +F+  + R
Sbjct: 240 VRLGSFVIDDALSDGRLKPLLVDCHVSETVPITALMPPGRQHLPRVRAFVDFLVEQTR 297


>gi|294666374|ref|ZP_06731621.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603871|gb|EFF47275.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 303

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 17/290 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R+F  +    SFT AA  + + +S+ ++ I+ +E  +G++L  R  R +  T  G 
Sbjct: 4   FDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+    +   ++  +   +   V P G LR+     L ++ L   L  F   YP IQ+
Sbjct: 64  LFHQRCMRILDDVDDAEGGFR--GVAPKGLLRVEVQGTLARHFLLPGLPAFFAHYPQIQL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R   P++ S L+ R++  +     A P YL+    P  ++
Sbjct: 122 VMSESDRWVDLVEEGIDCVLRY-GPLRDSELVARRVAMLERLTCATPQYLQRFGLPAQLE 180

Query: 185 ELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L+ H +     IT G + P   +    L T   P      S L V    S +    LG 
Sbjct: 181 ALEHHRMVGLRSITTGVVTPLEFQTAQGLRTFALP------SPLSVTGTESYLAGIRLGL 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GIA +P + V  +     LV I+ D   PS  V   Y  A + + +++ F
Sbjct: 235 GIAQVPRFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVF 284


>gi|119468743|ref|ZP_01611795.1| predicted DNA-binding transcriptional regulator [Alteromonadales
           bacterium TW-7]
 gi|119447799|gb|EAW29065.1| predicted DNA-binding transcriptional regulator [Alteromonadales
           bacterium TW-7]
          Length = 295

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 139/293 (47%), Gaps = 19/293 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  V  SGSF+ AA  L+   + +SR +S LE  +   L  R  R L LTE+G  
Sbjct: 8   EDLEMFLTVVDSGSFSAAANLLNQQVAKVSRAVSRLENTLQCTLLNRTTRRLELTEEGHI 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   +  + L+T +  ++     PSGKLRI        + L   + EF + YP I + 
Sbjct: 68  FIKYARDGLNTLQTGEEAIKLLKQSPSGKLRIDAASPFVLHQLVPLIAEFNMQYPHIMLD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +  ID+     D AIR+   ++ S+L  +KL    +H  A+P YLKN  E     +
Sbjct: 128 ITSHDSIIDLLEHKTDLAIRIGD-LKDSNLYAKKLGASKLHLVASPEYLKNAPELTQASD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--NSYLSIMQYCVLGSGIAL 243
           L +H LI F D  P      NW      P+  P     ++  +S  +I Q C+   GIAL
Sbjct: 187 LGQHKLIGFTD-SPALN---NW------PLNIPSKLSFEITASSGETIRQLCIANQGIAL 236

Query: 244 LPDYIVKDN---PNLVRIMEDVI-TPSF--TVYFCYPEALKNTGKLKAFRNFI 290
           L  +++ ++     LV ++ + I TP+    +   Y +    + ++ AF +FI
Sbjct: 237 LSHFMIGNDLKAGRLVNVLPNSIKTPNHREDIQAVYYKNSAVSSRIVAFLDFI 289


>gi|325926409|ref|ZP_08187734.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|325543198|gb|EGD14636.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 298

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 25/298 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA    F+ AA+ L  S +S++RQ++ LE  +G +L  R  R ++LT  GS 
Sbjct: 5   DAMRVFAAVAERNGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAGSA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   L+  +  +   +++P+G LR+   +  G   L   L  F   YP +++ 
Sbjct: 65  YYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L ++ +D+  +  D AIR+ R+P  +  LI R+L  + + A A+P YL     P    
Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APMLIARQLGKVRILACASPAYLARAGTPRHPS 182

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236
           +L  H  + +     GD +               P G+  +     L+ N+   +    +
Sbjct: 183 DLAGHECLLYHYSPSGDEV-----------RFQGPEGDIDVRLRGGLRANNGHVLNAAAL 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G GI + PD++ + +     LVRI+ D       ++  Y        K+++F +++ 
Sbjct: 232 AGQGIVMQPDFLAEPHLAAGRLVRILPDYALDEIGIFAVYTSRSHLAPKVRSFIDYLI 289


>gi|325913880|ref|ZP_08176239.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325539955|gb|EGD11592.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 308

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 133/297 (44%), Gaps = 17/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE L +S++S+++ +  LE  + ++L  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAETLEMSRASVTQLVQQLEARLRVRLLNRTTRRVHVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  ++  P G+LR+       + +L   +  F   YPDIQ+
Sbjct: 64  AYYERVVRLLADMDDAETSLSAAATLPRGRLRVDVPSPFARLILMPAVPAFHARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC +R    I   SLI R +  +    YAAP YL     P    
Sbjct: 124 DMGVSDRRVDLIGENVDCVVR-GGTIADQSLIARHVGDLTAGVYAAPSYLHRLGTPSHPS 182

Query: 185 ELD--KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL+  +H  + F        +P  M   +   TV    G   ++    N+YL+     + 
Sbjct: 183 ELENTRHRCVGFMRWGATTTVPYAMRRGDEAVTVH---GRHVVAADDGNAYLAA---GLA 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+  LP Y+      +  LV + ED       +   +      + KL+ F +++ 
Sbjct: 237 GMGVLWLPVYMAAAHVASGELVSVFEDWQLEPMPLSIAFAPNRHVSAKLRVFIDWVI 293


>gi|119471357|ref|ZP_01613829.1| putative transcriptional regulator, LysR family protein
           [Alteromonadales bacterium TW-7]
 gi|119445633|gb|EAW26917.1| putative transcriptional regulator, LysR family protein
           [Alteromonadales bacterium TW-7]
          Length = 297

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 132/287 (45%), Gaps = 5/287 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++V + VAR G+ T AAE L++  S++ R+I+ LE  +  +LF+RHARG  +TE G
Sbjct: 7   DWQDVKVAFEVARLGTLTAAAEALNVHHSTVLRRINSLEKNLDTRLFHRHARGYKVTEIG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL      +   LE    ++  +     G L + TT+    +++    ++F  L+P +Q
Sbjct: 67  AKLFATAQTIDTSLEQLHNDIAAADSTLRGSL-LLTTVSGFIDVMGDVCEQFQALHPQVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++IL+ K + +    A  A+R          I + L  +    YA   Y+     P S+
Sbjct: 126 LEVILEQKRLRLDHGQAHIALRAGPKPDEGDYIAQHLAKLTSGLYANKRYITKHGMPKSL 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN ++        +  F W    D  I   +I  L+V+      +  + G GI  
Sbjct: 186 GDLLQHNFVSGVAGYNARVPYFAW---ADENIPASQIK-LRVSETAEATRAIIKGLGIGG 241

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   +     +LV ++   +     V+      +  T K++AF   +
Sbjct: 242 LQHDVAAQYSDLVPVLHSELNWPTDVWLVTHHLVHRTAKVQAFAGLL 288


>gi|304396844|ref|ZP_07378724.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304355640|gb|EFM20007.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 299

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 134/283 (47%), Gaps = 22/283 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++LR +  V  SGS T AA QL  + S ISR +S LE+++   L +R  R L LT
Sbjct: 1   MKITLEELRAWVAVVDSGSITAAASQLAQTSSGISRALSRLESKLQTTLLHRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   +E  + ++      PSG+LR+        +++   + +F   YP
Sbjct: 61  EEGQVFLEHARQILASVEQAEEQIALRREMPSGRLRVNAATPFMLHVIVPLVDDFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  D+  ID+     D AIR+ + ++ S+L  R L +  +   A+P YL     P
Sbjct: 121 LIQLELNTDDIMIDLLEQQTDIAIRIGE-LRDSTLHARLLGSSAIQLMASPAYLAKAGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYC 235
            S+ +L +H  I F    P+ +  +  L    +P G+     P IS    +S  +I Q  
Sbjct: 180 QSVADLAQHQKIGFSH--PESLNVWPVL----QPDGDFMRIKPTISA---SSGETIRQLA 230

Query: 236 VLGSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYF 271
           + G GIA + D+  +++       P L     D+  P   VY+
Sbjct: 231 LAGQGIARISDFFSREDCATGRLVPVLSAETRDLRLPVHAVYY 273


>gi|257138245|ref|ZP_05586507.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 294

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 133/288 (46%), Gaps = 13/288 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  VAR G+ + AA +L    +++ R+++ LETE+  +L  R AR  TLT  
Sbjct: 2   FDWENLRHFLAVARVGTLSGAARELGADHATVGRRVTMLETELQTRLVERFARHCTLTGV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++  + S +       +  +Q    + +G + ++    L  N        F   YP I
Sbjct: 62  GRRMFEIASTMEAGAFAIERTVQAERSQLTGMVVVSAPPVLVTNFFAKETTAFRERYPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L    + + +S   AD A+RL +P ++ +++ R++  +    YAA  Y      P  
Sbjct: 122 QLALSGQAQSVSLSRREADVAVRLVRPKEADNVV-RRIGAMEFALYAARRY------PY- 173

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +QE  +   + + D     M    WL  V    G+  I+C ++    S       G+GI 
Sbjct: 174 LQEPARWEFVGYDDPFDD-MPQQRWLKKV---AGKRAIAC-RLGDITSQYAATRAGAGIG 228

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP ++   + +LV +  D    +  ++      LK +  ++A  +FI
Sbjct: 229 MLPRFLPAASDDLVELDVDAEPFARDIWLVVHRQLKASPPIRAVMDFI 276


>gi|190895042|ref|YP_001985335.1| putative LysR family transcriptional regulator [Rhizobium etli CIAT
           652]
 gi|190700703|gb|ACE94785.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327194376|gb|EGE61236.1| putative LysR family transcriptional regulator [Rhizobium etli
           CNPAF512]
          Length = 307

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 137/288 (47%), Gaps = 24/288 (8%)

Query: 19  SFTHAAEQ---------LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F HAAEQ           +S S+I + ++ LE+ +G++LF R  R ++LTE+G+ L+  
Sbjct: 11  AFVHAAEQQSYVAAARLAGVSPSAIGKAVARLESRLGVRLFNRTTRSISLTEEGTVLYEH 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V   +   +  + +   +P G+LR++    +G +LL   L  F   +P+I++ +  +
Sbjct: 71  YKRVLDDMRDAEAAVSKGRDRPRGRLRVSVPHIVGHHLLMPILPGFTARFPEIELDIDFE 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ ID+  +  D  +R  + +  + LI R L   H    A+P YL     P +  +L +H
Sbjct: 131 DRVIDLITEGLDVVVRSGE-LADARLIARPLGEQHFVVCASPAYLDRHGRPETPDDLSRH 189

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245
             I F    P       W     RP  E    PR   L  N+  + ++    G G+A LP
Sbjct: 190 ACIHFK--YPSTGRTAPW---AFRPPSERLLLPR--SLTFNNTDAGLRAARDGLGLAHLP 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y+ + +     L+ ++   + P  ++   +P   + + K++AF +F+
Sbjct: 243 VYVAEPHIRAGTLIPVLTAFMAPFGSLSLVWPSNRQLSPKIRAFVDFV 290


>gi|170701136|ref|ZP_02892110.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133958|gb|EDT02312.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 301

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 137/290 (47%), Gaps = 8/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE+++G++L +R  R  TLT+ G
Sbjct: 5   DLPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESQLGVRLLHRTTRQQTLTDDG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +I + +      G LR+    +LG+  +   +  F   +P++ 
Sbjct: 65  AQFHAQVLRILAEVERAEILMSDRRGTVGGVLRVTAPGELGRLRIAPLVAAFQRRHPELI 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P Y+     P   
Sbjct: 125 VQLMLTDAIVDLLAHDIDVAVRI-GSLADSTMIARELAPSHRVLCASPSYVAAHGLPAEP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I  GD  P+    F+        +     + L  N   +     + G+GIAL
Sbjct: 184 AELRAHRCIVMGDQ-PRAEWRFD---GAQGTVAVEVTAALLTNDGGAARTLALEGAGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V    D   LVR++     P+  ++  YP       +++AF +F+
Sbjct: 240 KSIWDVGADLDAGRLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVDFL 289


>gi|160899751|ref|YP_001565333.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365335|gb|ABX36948.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
 gi|222869730|gb|EEF06861.1| predicted protein [Populus trichocarpa]
          Length = 296

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 141/299 (47%), Gaps = 14/299 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +   VA S SFT AA  L  SQ  ISR ++ LE ++G +L +R+ R ++LT  
Sbjct: 1   MDLNAVHLLIKVAESRSFTQAATLLGTSQPRISRAVAQLEKDLGTRLLHRNTRSVSLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    + +   LE  +  + +    PSG LR+     LG+ +L   L + L  +P +
Sbjct: 61  GCALVDRCAPLIAGLEEARQLVSDRRCAPSGVLRMTAPSMLGRIVLVPLLGQLLREHPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI     ++ +D+  +  D A+R+  P+  S +I R L  +     A+P YL     P +
Sbjct: 121 QIDTSFTDRMVDMVEEGFDAAVRI-GPLADSRMIARALPPLRWVTVASPAYLAARGTPQT 179

Query: 183 IQELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           +QEL +H+ +       G  +P     + +LA     +  P    +  +S   +++  + 
Sbjct: 180 LQELAQHSCMAVYNHYLGRRVP-----WQFLAGNGEMLDWPAPQTVTFDSGDPLVEGSLG 234

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G G+A + ++ V+++     LVR++      +  +   YP   + + ++KA    +  +
Sbjct: 235 GLGVAQVMEFAVREHLQAGRLVRLLPQHEGRARELSLVYPRTRQASPRIKALAQLLLAQ 293


>gi|299532615|ref|ZP_07046004.1| LysR family transcriptional regulator [Comamonas testosteroni S44]
 gi|298719418|gb|EFI60386.1| LysR family transcriptional regulator [Comamonas testosteroni S44]
          Length = 287

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 18/297 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR+F   AR  S T AA++LH++Q+++S+ I  LE  +G  LF R  RGL LT
Sbjct: 1   MQLPLNALRMFDAAARHQSLTRAAQELHVTQAAVSQHIRNLEERLGKPLFRRLPRGLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L  V ++ + ++E +  ++ E   +P   L +          L   L +F  L+P
Sbjct: 61  DEGQALWPVVAQSFERIEQSLQQVAEP--RPREILTVGVVGTFAIGWLIPRLSQFQQLHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L+ +N  +D++ +  D A+R        +  Q  L+   +     P   +  REP
Sbjct: 119 YIDLRLLTNNNRVDLAGEGLDAAVRFGDGAWHGTHAQ-MLLRAPLSPMCTPMLAQQLREP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +  L+       +  E   W A +D+    P       +S L++ +    G+G
Sbjct: 178 ---ADLARQTLLRSY----RTQEWEGWFAGLDQ--AAPLARGAMFDSSLTLAEAAAQGAG 228

Query: 241 IALLPDYIVK---DNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IALLP  + +       LVR    +V T ++  +  Y ++ + +  L+ FR ++  +
Sbjct: 229 IALLPARMFEHMLQQGRLVRPFAHEVDTGAY--WLTYLKSRQASAALQTFRQWLMTQ 283


>gi|91224513|ref|ZP_01259775.1| hypothetical transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91190855|gb|EAS77122.1| hypothetical transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 307

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 105/190 (55%), Gaps = 1/190 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +   V+  G+F  AA++ H+ +S++S+QI  LE E+G++L  R  R L+LT  G ++
Sbjct: 6   QLELLLDVSEYGTFAKAADRNHIDRSALSKQIKKLEDELGLRLLNRSTRSLSLTNAGVEM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +V   L  T+        +P G L+I+++   G+  L   +KEF+  YP+I ++L
Sbjct: 66  VAQAKKVREVLTETRSIAATFQDEPKGNLKISSSTFFGRAYLNQAVKEFIKQYPNITVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +LD+  +D+  +  D   R+  PI+ S++I RKL + +M   A+  ++     P S +EL
Sbjct: 126 LLDDNRVDVIHEGFDVVFRI-GPIRESNMIVRKLASNNMALVASKSFIDKYGTPSSPEEL 184

Query: 187 DKHNLITFGD 196
            K   + + +
Sbjct: 185 IKMPAVIYSN 194


>gi|330808819|ref|YP_004353281.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376927|gb|AEA68277.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 295

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 130/277 (46%), Gaps = 24/277 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR GSFT AA  L ++QS++S+ +SGLE  + I+L  R  R ++ T  G +L +  
Sbjct: 12  FVTIAREGSFTRAASVLGVTQSALSQAMSGLEARLEIRLLTRTTRSVSPTAAGERLLKAI 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL----YPDIQIQL 126
              + ++E    EL E   KP+G +RI      G+++L+ +L   L      YPDI+I+ 
Sbjct: 72  GHRFDEIEAELDELTEMRDKPAGTVRITC----GEHILRAHLLPKLTPLLLDYPDIKIEF 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            ++    DI  D  D  +R+   I    +       + M A A+P Y +    P + ++L
Sbjct: 128 DINYGFRDIVADRFDAGVRMGDTIDKDMVAVPIGPQLRMAAAASPTYFERHPTPKNPRDL 187

Query: 187 DKHNLI-----TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            KH+ I     T G L       + W      +P+       L  N+  S++   + G G
Sbjct: 188 LKHSCINQRMQTAGGL-------YVWEFERRGQPLNVRVDGQLVFNTSPSMVDAALAGLG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           IA LP+       +N  LVR++ED   P    +  YP
Sbjct: 241 IAYLPEEEFAPHLENGRLVRVLEDWCAPFPGYHLYYP 277


>gi|326387788|ref|ZP_08209394.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207834|gb|EGD58645.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 303

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 3/186 (1%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           +AR GSF   A       S +SR+++ +E E+G ++F+R  R ++LTE G+   R    +
Sbjct: 12  IARRGSFARVARDRGADPSWVSRKVADIEDELGFRIFHRTTRRVSLTEAGTIYLREAETI 71

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              L+  +      S  PSG LRI  T+  GQ +L   L  F   YP + ++L+L +  +
Sbjct: 72  VEALDRARDNALSVSQVPSGTLRITCTVAFGQKILVPLLPRFRRDYPQVDLELVLSDASL 131

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+  D  D AIRL  P  S   +  KL        A+P YL+    P +   L  H+ + 
Sbjct: 132 DLVEDRIDLAIRL-GPGVSGDFVVSKLRDTRYRVCASPDYLRRQGRPATPAALAGHDCLR 190

Query: 194 FGDLIP 199
           F  L+P
Sbjct: 191 F--LLP 194


>gi|300989685|ref|ZP_07178958.1| transcriptional regulator, LysR family [Escherichia coli MS 45-1]
 gi|300407301|gb|EFJ90839.1| transcriptional regulator, LysR family [Escherichia coli MS 45-1]
          Length = 302

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 10/205 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELERELESLIQLNGAPSGNIRLSAGEHAARSLVWPKLKSFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    +P Y      P + 
Sbjct: 125 VELVVDNGFVDIVDGRFDAGIRLGESVDKDMIAVRIGPDMRMAMVGSPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL 208
            EL  H          +C+ +  W+
Sbjct: 185 HELQNH----------RCINNVTWI 199


>gi|296115297|ref|ZP_06833936.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978120|gb|EFG84859.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 306

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 134/275 (48%), Gaps = 9/275 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF     +G F+ AAE+L LS+S++ + ++ LE  +  +LF R  R LTLTE+G  
Sbjct: 6   ENISVFVEAVEAGGFSRAAERLGLSRSAVGKAVARLEERLDARLFNRTTRVLTLTEEGQI 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +L + +  L        GK+R++  I  G++ +   L E    YP++ + 
Sbjct: 66  YYDKCRRALKELRSGEELLHAGRTDVVGKVRMSMPILFGRHCVTPILLELARQYPNLDLD 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D+  +  D AIR       S L  RK+ + +    AAP Y     +P +I +
Sbjct: 126 LRFSDLLVDVIGEGFDLAIRQGPIADGSGLRIRKICSQNKIICAAPSYFSERAKPQTIHD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L+ H+ + +     +    F W L  +D  +   ++   LQ ++  +I+   V G GIA 
Sbjct: 186 LEMHDALVYW----RSNRLFPWQLRDLDGNLQNCKLKWRLQFDNLEAIVDAAVAGLGIAW 241

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPE 275
           LPD++++ + N   L+ +++   + +   +  +PE
Sbjct: 242 LPDWLIRPHLNEGRLLSLLDGFPSTAVDTFAVWPE 276


>gi|325981871|ref|YP_004294273.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212]
 gi|325531390|gb|ADZ26111.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212]
          Length = 291

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 7/247 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V ++ SF  AA+ + +  S++SR+IS LE  +G++L +R  R +TLTE G  
Sbjct: 5   DDMALFVEVVKAKSFRGAADIIGIPNSTLSRRISALEKSIGLRLLHRTTRRITLTEAGQI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  + +    +L E   +PSG LR +  +D     +   + EF  LYP I   
Sbjct: 65  YFERCKRIVDEAKLAHEQLGEMLEQPSGVLRASLPVDFAVTYMTPLIAEFARLYPGIVFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++  D+  +  D AIR+ +P ++  LI R L  + ++ YA+P YL    E     +
Sbjct: 125 FDLTSRRADLVSEPFDVAIRIGEP-ENPQLIARPLGVLPVYLYASPRYLDRSGELAEPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +  G +        N   T++  IG    S  ++NS   I +   L  GI ++ 
Sbjct: 184 LAHHECL--GIMKSNTWTLHNGAHTIEVSIG----SRFKLNSVGMICRLAALDMGIIMMW 237

Query: 246 DYIVKDN 252
           + IV D+
Sbjct: 238 EKIVADD 244


>gi|197251294|ref|YP_002148535.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197214997|gb|ACH52394.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 300

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 124/279 (44%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 8   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 68  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +   D  W+ T            L VNS  +    C+ G
Sbjct: 187 SHAVVHY-SLTPGVSSPGFAFETPHDMQWVKTG---------GMLTVNSTETWHTACLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI   P   V++      L+ I+         V   YP
Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275


>gi|167835265|ref|ZP_02462148.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 298

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 125/285 (43%), Gaps = 10/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A +GSF  A   L LS   + + +  LET  G++L  R  R  +LTE G   +
Sbjct: 1   MAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  + +            P G LRI   I  G + L   L  +L  YP++++ L 
Sbjct: 61  ERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYLRAYPEVRVDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  D  IR+  P+  S LI R L    +   A+P YL     P +  +L 
Sbjct: 121 LSDRVVDFVDEGYDAVIRI-APLADSGLIARPLAPYRLVLCASPAYLAERGTPATPADLA 179

Query: 188 KHNLITFG-DLIPKCME-DFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
            H  + F     P  +E  F         +   R+ S L VN+  ++    + G GI L 
Sbjct: 180 AHECLGFSYSGQPAALEWPFESAQGQQHSV---RVRSRLAVNNGAALRMAALDGLGIILQ 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P  +V+D+     LVR++     P+  ++  Y    + T KL++F
Sbjct: 237 PAELVRDDLAAGRLVRLLPGHEPPARPIHLLYSPDRQPTPKLRSF 281


>gi|82778551|ref|YP_404900.1| putative DNA-binding transcriptional regulator [Shigella
           dysenteriae Sd197]
 gi|309785569|ref|ZP_07680200.1| HTH-type transcriptional activator aaeR [Shigella dysenteriae 1617]
 gi|81242699|gb|ABB63409.1| quorum sensing regulator A [Shigella dysenteriae Sd197]
 gi|308926689|gb|EFP72165.1| HTH-type transcriptional activator aaeR [Shigella dysenteriae 1617]
          Length = 309

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 4/239 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +        E         R I + R      N  ++++++   G+G+A +P
Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGLAYVP 240


>gi|319795723|ref|YP_004157363.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598186|gb|ADU39252.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 309

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 134/293 (45%), Gaps = 14/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W ++ +   +A +GS + AAE L LS ++ SR +S LE  +G +L  R+ R L LT+ G 
Sbjct: 4   WTEIALLVQIADAGSLSRAAEALGLSNAAASRHLSALEARLGARLVERNTRRLYLTDTGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +   L   +  +  +++ P+G LRI  ++    + +   L+++   YP + +
Sbjct: 64  EFCARAKTILADLADAESTVNATALNPTGVLRITASLSFSIHHIAPLLRDYTQRYPGVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   N+  D+  +  D AIR R+    S++  R+L        A+P Y      P ++ 
Sbjct: 124 HVEAANRYFDLIDNNIDVAIRTREYEPDSNVTIRRLGETRRVLAASPRYFAQHGFPKTLD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           EL +H L     LI     + N L    +  GE         L+ N    +    + G G
Sbjct: 184 ELKRHKL-----LIYTHANNPNELRFTRK--GETHTVSVTGLLESNDGQVLRAAALDGMG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I + P YIV ++     LV  ++D   P  T+   YP     + K+++F +F+
Sbjct: 237 ILVQPTYIVYEDIVAGRLVPTLDDWDLPHLTINLAYPSRKHLSAKVRSFIDFM 289


>gi|289624296|ref|ZP_06457250.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646577|ref|ZP_06477920.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330870144|gb|EGH04853.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 299

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 134/286 (46%), Gaps = 13/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A  GSFT  AE   + +  ++R I  LE  + ++LF R  R + LT +G + +
Sbjct: 1   MQVFAKLAELGSFTKVAEATQIGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60

Query: 68  -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV + +    ETT +  +  S    G+LRI       Q     +LK F   +PDI++ L
Sbjct: 61  ERVKNNLADLAETTSMFDRNGSTL-RGRLRIDIPAAFSQRSFMESLKGFTQAFPDIELAL 119

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+  +  DCA+R+ + +  SSL+ R++    M   AAP YL+    P ++ EL
Sbjct: 120 GVTDRTVDLVAEGIDCALRIGE-LPDSSLVVREIGRATMVTCAAPSYLQAFGTPETLDEL 178

Query: 187 DKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             H  ++F  L  +      W   L   D P+  P    + VN   + +Q  + G GI  
Sbjct: 179 AGHCGVSF--LSGQSNRPLPWHFSLNGDDFPV--PPRGGITVNESNAYVQCGLAGFGILQ 234

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            P   V+    +  LV ++E        V   YP       +++AF
Sbjct: 235 APGITVESFLASGELVEVLEAFRPLPRPVSVLYPSRTHLAPQVQAF 280


>gi|293608019|ref|ZP_06690322.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828592|gb|EFF86954.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 310

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 118/255 (46%), Gaps = 13/255 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L +    YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLADLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGT-LTDSSFHARIFGTQKYHLAASPQYVAEYGVLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236
              EL++H  + +     K  E  N WL  V +P  E    P    L  N+  S+M   +
Sbjct: 185 QPTELNQHKCLVY-----KGFEGPNRWL--VRKPNEEWIHYPITPLLSSNNAESLMTAAL 237

Query: 237 LGSGIALLPDYIVKD 251
            G GI L PD+++ +
Sbjct: 238 HGMGIVLFPDWLIGE 252


>gi|229590461|ref|YP_002872580.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
 gi|229362327|emb|CAY49229.1| LysR family transcription regulatory protein [Pseudomonas
           fluorescens SBW25]
          Length = 300

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 137/292 (46%), Gaps = 17/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   A +GS + AA  L L+ ++ S  +  LET +GI+L  R  R + LTE+G +  
Sbjct: 7   LEVFVRTADTGSLSAAARGLGLTPAAASIALKRLETRLGIRLLARSTRSMRLTEEGRRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L   +  +++     SG L++A   D G+N+L G L EF L +P+I++QL+
Sbjct: 67  ESVRVALEALSEGEQAIKQQGQSLSGLLQLAAPSDFGRNVLLGWLDEFKLEHPNIRLQLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQEL 186
           L++ + D+  D  D A+R   P + SSL+   +V  H     A+P YL     P +  +L
Sbjct: 127 LNDSNADLFRDTVDIALRFGVP-RDSSLVALPVVPGHHRIPCASPDYLARHGTPRTPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGI 241
            +HN + +   + +   +  W    D  + E  ++      YLS     + ++ + G GI
Sbjct: 186 AQHNALRY---MRQGRANSTWYFRQDTALQEVEVT----GDYLSDDGEIVRRWALAGHGI 238

Query: 242 ALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A   +  I +D     LV ++ D            P  L+ + ++K    F+
Sbjct: 239 AYKANLDIARDIQAGRLVPLLPDWQGEPTPFNLMCPHRLQVSERVKVLHRFL 290


>gi|207723315|ref|YP_002253714.1| hypothetical protein RSMK00567 [Ralstonia solanacearum MolK2]
 gi|206588513|emb|CAQ35476.1| hypothetical protein RSMK00567 [Ralstonia solanacearum MolK2]
          Length = 309

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  V   GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QLETFVAVTTRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + L   +  +    VK SG LR+      G+  +   + +FL  +PD+ I L
Sbjct: 66  LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL+    P  ++ L
Sbjct: 126 DLGDRIVDLVNEGFDCAIRL-GDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEHL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             HN + FG           W+   D      ++   ++      + ++C+ G G+A   
Sbjct: 185 AGHNCLAFG---ASANVQRGWVFQQDGKTVTVKVGGTMECTDGAVLREWCLQGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289


>gi|107025345|ref|YP_622856.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693472|ref|YP_839005.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105894719|gb|ABF77883.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651472|gb|ABK12112.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 136/285 (47%), Gaps = 7/285 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A  GS++ AA  L ++ S+IS+ I  LE    IKLF R  R LTLT++G  LH  
Sbjct: 14  AFSRAASLGSYSAAARALGVTPSAISKSIQRLERHFEIKLFNRTTRSLTLTQEGRDLHER 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           T  +  ++E  +     +  +P+G L++   + +G +L+   L  F   +P + I L L 
Sbjct: 74  TLRLLSEMEAIEQAAASARSEPAGILKVTAPLPIGVHLIAPALPAFRQRFPKLSIDLRLG 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+  +  D A+R+   +  S L+ R L   ++ AYA+P YL     P    EL +H
Sbjct: 134 DHFVDLVGEGIDVAVRVGD-LTGSRLVSRALSPHYIGAYASPDYLAKRGVPRHPDELVEH 192

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           + + F        +   W  AT + P+     + + V++  ++      G G+ + P Y+
Sbjct: 193 DCVNF--RFQSSGQVLRWTFATDEGPLSLTPDADIVVDTSDAVAAVMAAGGGVGISPTYV 250

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                    LV I+ + + P  T+   +PE+ +++  +K    ++
Sbjct: 251 AAAYVRRGELVPILTEFVEPRSTITALWPESRRSSPNVKVLLAYL 295


>gi|330958333|gb|EGH58593.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 303

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 11/272 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + +F  V RSGSF  AA QL +  +++SR+I  LE ++  +L  R  R L LT
Sbjct: 1   MVPDLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRIQQLEAQLDTRLLQRSTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +         L     +L     +P G++RIA T D         + +FL  YP
Sbjct: 61  PAGQDFYERCMGAVDGLTDAAEQLVSRREEPGGRVRIAATADFFDFFSMDWVADFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179
            +Q++ +L +   D+  +  D A R   P+Q S  + R+L+        A+P YL     
Sbjct: 121 RVQLEFVLSDDRADLIAERLDIAFR-GGPLQDSGYVGRQLIDEERDCMVASPAYLATHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P S++ L  H  +      P     +  L   ++ + E +I+     N+  ++ +  + G
Sbjct: 180 PASLESLQAHYCVCAAH--PGSFNTWRLLGPEEK-LHEVQIASRFNANTAQALRKAALAG 236

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVY 270
            GIALLP  +++ +     + + ++ P  T Y
Sbjct: 237 LGIALLPTTLIRAD-----LRKGLLVPVLTQY 263


>gi|114799792|ref|YP_760089.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114739966|gb|ABI78091.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 300

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  +A  GSF+ A  +L LS S+ISR +  +E  +G++L  R  R LTLT +G    
Sbjct: 15  LEVFAAIASEGSFSAAGRRLDLSASAISRTVDRIEERLGVRLILRSTRALTLTAEGQAYL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +  + +    P G+LR++  +  G+  +   L +F +LYP I + + 
Sbjct: 75  SAARRILTDLDEAEQSIADQGA-PRGRLRVSAALAHGRLCIVPLLGQFSVLYPHILVDIS 133

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR   P+  S L+ RKL        A+P Y+     P   ++L 
Sbjct: 134 LTDNVVDIAAGETDVAIRF-GPLADSPLMARKLGESGRVIVASPDYIARNGAPEMPEDLY 192

Query: 188 KHNLITF 194
           +HN ++F
Sbjct: 193 RHNCLSF 199


>gi|78062531|ref|YP_372439.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970416|gb|ABB11795.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 315

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G   
Sbjct: 6   NMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   +PD+ I+L
Sbjct: 66  LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPALTRYHAQFPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P+  Q+L
Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGAPVRPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H  +T   L         W+  ++ P G  +I     +Q N+  S+      G GI +
Sbjct: 186 SAHACLT---LCTPAFPTHEWV--LEGPEGVEQIHVTGPVQTNTAESLALAIRDGIGIGM 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   D   +  LVR++   I     VY  YP            R F+  K R W
Sbjct: 241 LPLYSAIDALRDGTLVRVLPAHILQKMNVYALYPS-----------RRFVDAKVRTW 286


>gi|221068556|ref|ZP_03544661.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713579|gb|EED68947.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 294

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 136/289 (47%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  ++R+ S   AA  L + Q+++ R+++ LE+E+G KLF R   G  LT  
Sbjct: 1   MNWDDTRIFLALSRTHSLRAAARSLGIDQATVGRRLNALESELGAKLFLRAKDGYLLTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +       + +++     P G +R+ +T  +  +LL   ++     +P+I
Sbjct: 61  GEVALAAAKRMESAALDLRTKIEGQDENPGGLVRVTSTDSIAIDLLLPAVERLQRHWPNI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L +  + + +    AD A R  +P  +  L+ R++ +  +  +A+  YL    EP  
Sbjct: 121 RVDLEVSTQLLSLGRRQADIAFRNVRP-DTPELVVRRVASWPVGLFASTSYLARFGEPAP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H+L+ +G      +E   +L+    P  + +I  + V S L + +    G GI 
Sbjct: 180 EDELRGHHLVAYG----PYLEQSPFLSMAGVPARQAKI-AMSVRSSLLVRKAVAAGIGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
            +P ++  +   LVRI      P+ + V+      L+ T +++A   F+
Sbjct: 235 EMPLWM-GEREGLVRIWPQRRRPNDYEVWQVMHPDLQRTARVRAVAQFL 282


>gi|260855028|ref|YP_003228919.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O26:H11 str. 11368]
 gi|257753677|dbj|BAI25179.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O26:H11 str. 11368]
 gi|323153526|gb|EFZ39779.1| transcriptional regulator, LysR family protein [Escherichia coli
           EPECa14]
          Length = 299

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    +  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGHHLYYPHRRHAG--SAFSLFI 290


>gi|259909882|ref|YP_002650238.1| Transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96]
 gi|224965504|emb|CAX57036.1| Transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96]
 gi|283479966|emb|CAY75882.1| probable RuBisCO transcriptional regulator [Erwinia pyrifoliae DSM
           12163]
          Length = 302

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 137/301 (45%), Gaps = 20/301 (6%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS   D+LR    F     SGSFT AA +LH++ S++S+ I+ LE  +G +LF R  R L
Sbjct: 1   MSVSEDRLRGIAPFVASVESGSFTAAAGRLHITSSAVSKSIARLEARLGSRLFERTTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G   +   + V  +L   +  L      P G+LR+A     G+  +   L +F  
Sbjct: 61  LLTDAGQAFYDTCARVLSELAEAESVLAAQRSIPVGRLRVAVPHTFGRLHVMPMLNDFCR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN 176
            +P++Q+ L   ++ +D+  +  D A+R+  P     SL  R L +  +   AAP YL  
Sbjct: 121 QHPEMQLNLSFSDRFVDLFEEGVDMAVRIGGPGNYPPSLGVRYLGSERLIFCAAPDYLAQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM---- 232
              P S+ +L++   I +  +         W   V  P G  RI+   V   +++     
Sbjct: 181 HGTPQSLAQLEQRQAIVYARIDGSTSP---W--HVASPDG--RITTRTVAHRMALADGEA 233

Query: 233 --QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
                V G G+A +  +++++      LV ++  +  P   +Y  +P   +   K+ A  
Sbjct: 234 QRSAVVAGLGVAQMATWLMEEQLARGELVPLLPQLAVPGLPLYMVWPRRKQLMPKVGALL 293

Query: 288 N 288
           N
Sbjct: 294 N 294


>gi|293414655|ref|ZP_06657304.1| LysR family transcriptional regulator YcjZ [Escherichia coli B185]
 gi|291434713|gb|EFF07686.1| LysR family transcriptional regulator YcjZ [Escherichia coli B185]
          Length = 299

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SILGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|152982397|ref|YP_001353609.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151282474|gb|ABR90884.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 284

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 15/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  LRVF  +AR G+   AA +L  +Q ++ R++  LE  VG KLF R + G  LT++
Sbjct: 2   MEWSDLRVFLAIAREGTLGAAARKLGQTQPTMGRRLRALEEAVGHKLFQRGSSGFILTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ +      +  + E  Q +L     +  G LRI ++   G ++L   L +F  ++P +
Sbjct: 62  GAAVLIHAERMADEAEAFQRQLAGQDQQLEGLLRITSSDWFGTHVLAPVLADFTRMHPRV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+ D +   ++   AD A R+ +P   + +  RKL+ +    YAA    K    P  
Sbjct: 122 TIELLTDARVFSLARREADLAFRI-QPFDEADVAARKLLHMPYGLYAA----KGMARP-- 174

Query: 183 IQELDKHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            Q  D     L+T  D       D  WL    R +   +I+ L+ N+     Q C  G+G
Sbjct: 175 -QAGDGAGSMLVTM-DTAFDGAPDAVWL---KRLLPHAQIA-LRSNNRDVQAQMCAHGAG 228

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +A+LP  +    P L  +      P    +  Y + L+   +L++  + +  +  D
Sbjct: 229 LAVLPRLLGDKFPGLDLVDLGEAPPGRDTWLGYHKDLRQLARLRSLLDLLIERLAD 284


>gi|311277796|ref|YP_003940027.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308746991|gb|ADO46743.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 308

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 14/253 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA+QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAAKQLQMSVSSISQTVSRLEDELQVKLLNRSTRSIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L     E L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAKITAEMLKEYPGLTVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R++ ++ M   AA  YL+    P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRIGSMPMVVCAAKSYLQQAGTPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             H+ + +     +   +F       +AT   P G         N  +++ ++   G+GI
Sbjct: 185 ASHSWLEYS---VRPYNEFELIGPEGIATRLTPQGR-----FVTNDPMTLSRWLNAGAGI 236

Query: 242 ALLPDYIVKDNPN 254
           A +P   V D  N
Sbjct: 237 AYVPLMWVIDEIN 249


>gi|262403219|ref|ZP_06079779.1| transcriptional regulator [Vibrio sp. RC586]
 gi|262350718|gb|EEY99851.1| transcriptional regulator [Vibrio sp. RC586]
          Length = 296

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 128/279 (45%), Gaps = 17/279 (6%)

Query: 4   DW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DW   ++ +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE 
Sbjct: 2   DWIQSVKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPDI
Sbjct: 62  GALFYQRAKTQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQLI         +       R  + + S S     L       YA+P YL+    P +
Sbjct: 122 RIQLITTTPGQLPELHLDLFISREIEQLNSLSFKATPLFEHQAGFYASPSYLQKQGTPKT 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
           +QEL +HN++ +G+   + +++              RI+        +  ++      G 
Sbjct: 182 LQELTQHNVLCWGEQTFREVKNAQ----------GKRITLTGNFATTNPEALFYAGKSGM 231

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           G+ +    ++K+     NL+RI+ D+     TVY  YP+
Sbjct: 232 GVIVTGHIMIKEELKQGNLMRILPDITVDEATVYAYYPK 270


>gi|190890900|ref|YP_001977442.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190696179|gb|ACE90264.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 299

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 136/298 (45%), Gaps = 15/298 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G F+ AA +L++S + +   +  LE  +G++L  R  R ++LTE G   +
Sbjct: 7   LAVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEERLGVRLLNRTTRKVSLTETGKYYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +S++  +L+         S  P G L++ T+  + + LL     E++ LYP I +   
Sbjct: 67  ERSSQILAELDEADRTASALSTTPRGTLKVYTSGSIVRFLLP-VFSEYMELYPSISVDFS 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  + +D+  D  D  IR   P   SSLI RKL         +P Y+ +   PL   E+ 
Sbjct: 126 VGERMVDMIEDGYDLVIRTLPP--DSSLIARKLTPWRHMLVCSPAYVDSHPLPLKPAEIA 183

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
            HN + +    P   E   W     D      ++S   V++   ++++  L G G+ L P
Sbjct: 184 DHNCLQYA-YYPYGDE---WRFEDGDGRQESVKVSGNVVSNNAEMLRFLTLNGRGLFLAP 239

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
            ++V D+     L+RIM D     FT+   YP       K++ F + +   F + R W
Sbjct: 240 SFVVFDDIAEGRLIRIMPDYRPVEFTINAVYPNRSHLPTKVRLFIDLLAERFAEHRKW 297


>gi|54308594|ref|YP_129614.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913023|emb|CAG19812.1| Hypothetical transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 300

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 133/290 (45%), Gaps = 15/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V + GSF+ AA    ++ + I + I  LE  +G KL  R  R  +LTE G   +
Sbjct: 7   MQAFVSVVQHGSFSGAAADCSVTPTMIGKHIKFLEVHLGTKLLNRTTRKQSLTEAGQIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +  LQ    KP G +RI + +  G  +L   + +FL  YP+I I   
Sbjct: 67  LECKRILDDIAEAENSLQTLENKPKGTVRINSPVTFGNIVLAPIVADFLQDYPEINIDFT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN  ID   D  D  IR+ + + SSSLI R++    M   A+  YL  C  P S+ EL 
Sbjct: 127 LDNSLIDPLHDPFDLVIRIGE-LASSSLIAREIARYEMVFCASADYLSECGTPTSLDELL 185

Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H  + F  GD+        N    +D    + + + L  NS  ++    + G+GI L P
Sbjct: 186 RHQCLGFSYGDV------HANLALLLDTLAFDKQHTRLISNSGQALKVAALKGAGILLQP 239

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYP-EALKNTGKLKAFRNFIF 291
             ++ D   +  LV I+         V+  Y  +AL    K +AF +F+ 
Sbjct: 240 RLLLNDELSSGQLVEILSSDTPKPMPVHLLYKRKALPL--KTRAFVDFLL 287


>gi|283788115|ref|YP_003367980.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282951569|emb|CBG91268.1| LysR-family transcriptional regulator [Citrobacter rodentium
           ICC168]
          Length = 309

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 131/289 (45%), Gaps = 11/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMTVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G     L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTATMLKEYPGLTVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLAQYGIPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ + +        E         R I + R      N  ++I ++   G+G+A +P 
Sbjct: 185 ANHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTISRWLTAGAGVAYVPL 241

Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
             V +  N  R   +++ P +      VY  Y E  K   K++   N++
Sbjct: 242 MWVINEIN--RGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINYL 288


>gi|237808161|ref|YP_002892601.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500422|gb|ACQ93015.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 296

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 134/281 (47%), Gaps = 18/281 (6%)

Query: 3   FDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
            +WD+LR   VF  V  SGS T AA++L ++ S++S+ I  LE  +G+ L +R  R LTL
Sbjct: 2   LNWDRLRGMVVFASVVESGSMTSAADKLGMTASAVSQHIRQLEQSLGVTLLHRSTRKLTL 61

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +E G   +  T+ +   +   +  LQ    +P G+++I   + L    L   L  F+  Y
Sbjct: 62  SEAGRHFYPGTAAMISAVREAEEGLQILRDQPVGEVKITAPLGLSHGPLNSVLIPFMQQY 121

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P ++I L   + + D+  +  D AIR   P++ S+L+ ++L +  M A A P YL N   
Sbjct: 122 PGLKITLDCSDVERDLIAEGYDLAIRF-GPLKDSALVAQRLTSCRMIAVATPAYLDNAGI 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           P   ++L +   I         ++  +   W   V         + L  +  L   Q+C+
Sbjct: 181 PQQPEQLMQLRWILSQPQTSLSLQHTHGQRWQGKVK--------AQLVGSDILLQRQWCL 232

Query: 237 LGSGIALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYP 274
              G+++ P   I++   +  LV ++ D  +PS  +Y   P
Sbjct: 233 AHMGVSIQPYSEIIELLADETLVPVLPDWQSPSAGLYAVTP 273


>gi|87121592|ref|ZP_01077480.1| transcriptional regulator [Marinomonas sp. MED121]
 gi|86163124|gb|EAQ64401.1| transcriptional regulator [Marinomonas sp. MED121]
          Length = 317

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 127/293 (43%), Gaps = 15/293 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD ++ F  ++RSGS    AE+  +S S+ISR+I  LE  +G KLF R+  G  +TE
Sbjct: 23  TINWDDVKFFLALSRSGSARSVAEEFGMSHSTISRRIDQLEKSLGSKLFNRNVSGYQMTE 82

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L     E    ++  +  L     K  G L + T   +   LL   L  F   +P 
Sbjct: 83  DGLALSHYAKEAEEAMKGAEQVLMGKDAKLVGNLHLTTPDVIANKLLMPELASFSQEFPQ 142

Query: 122 IQIQLILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           I + + + +   ++S   AD AIR   R  +   +LI RKL  +    YA P YL     
Sbjct: 143 INLNITVSSNRFNLSRYEADIAIRFIERGGVPPENLIGRKLSDVATCLYATPAYL--AEH 200

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLG 238
            L  + +    L    +  P      +W+  +  P   P + C+  +N  L  ++    G
Sbjct: 201 TLQGESITARWLGWTAEKQP------DWV--LKSPY--PDVPCIHTLNQGLLHLEAVKAG 250

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G+ + P ++      L+RI       ++ ++       +   +L+ F+ FI 
Sbjct: 251 MGMGMFPCFLADKCDELIRIPGAKPQLTYEIWLLSHPDYREVARLRRFKQFIL 303


>gi|94312821|ref|YP_586030.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
 gi|93356673|gb|ABF10761.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
          Length = 317

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 131/289 (45%), Gaps = 9/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A +GSFT AA    ++ +++SR IS LE  +G++LF R  R + LTE G    
Sbjct: 13  IELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEKRLGVRLFVRSTRSIRLTEGGRSYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  ++L   + ++    V+PSG LRI+     G   L   L      +P ++ ++ 
Sbjct: 73  EQCRGALNQLIEAERKVTGEQVQPSGTLRISAPTTYGHYRLLPLLPALRERFPLLRFEVQ 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N++ID   +  D AIR R     S+++ R L    +   A+P YLK    P ++++L 
Sbjct: 133 IGNRNIDFHEENFDVAIRFRAQ-PDSTMVSRHLEDAELVVVASPGYLKRAGRPQALEDLQ 191

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +H  I F   +P       WL      +R +       L     L+ +     G+G+   
Sbjct: 192 QHECIQFD--LPSSGRPIAWLFMDGGREREVLATESHYLCAEDVLAGVTLARSGAGLFQT 249

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +IV+    +  LV +++     S  V   YP       +++ F +F+
Sbjct: 250 YRFIVERDLADGTLVEVLQPFAGRSRPVSLMYPHGRLLPSRVRVFVDFL 298


>gi|293394899|ref|ZP_06639189.1| transcriptional regulatory protein [Serratia odorifera DSM 4582]
 gi|291422650|gb|EFE95889.1| transcriptional regulatory protein [Serratia odorifera DSM 4582]
          Length = 303

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 139/295 (47%), Gaps = 20/295 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L+ F  VA +G  + AA +L +++S +SR+++ LE  +G++L  R  RG  LTE G
Sbjct: 7   NIEELQTFVEVADAGGISPAALRLGIAKSIVSRRLARLEKALGVQLLARTTRGTALTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +     T   Y      +I+    ++ P+    G+LR+A  +  G       + E    +
Sbjct: 67  A-----TFRDYAARACAEIDAARETILPTGELRGRLRVAVPLSFGSTHFAPAIAEMARRH 121

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + IQ    ++ +D+  +  DCAIR+   +Q S+LI R++  I+    A+P Y++   +
Sbjct: 122 PRVNIQACYSDRFVDLIAEGYDCAIRVGY-LQDSNLIARRIGPIYGKLVASPDYIQAHGQ 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S +EL  H  +  G    + + D + + TV RP G       + ++  +++     G 
Sbjct: 181 PNSPEELLSHQALMQGTETWQ-LTDGDKIITV-RPQGR-----FKADNGTALVAAATAGL 233

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GIA LPD +      +  LV +M +   P    Y   P       K++     + 
Sbjct: 234 GIAYLPDCLTHPHLASGALVPVMINHPPPPAGAYVIRPPGQHPARKIRVLTELLI 288


>gi|238751395|ref|ZP_04612888.1| HTH-type transcriptional activator aaeR [Yersinia rohdei ATCC
           43380]
 gi|238710453|gb|EEQ02678.1| HTH-type transcriptional activator aaeR [Yersinia rohdei ATCC
           43380]
          Length = 303

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   GSFT AA QL +S SSIS+ +S LETE+ IKL  R  R + LTE G   
Sbjct: 6   RMSIFAKVVECGSFTGAARQLAMSVSSISQTVSKLETELNIKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + + L
Sbjct: 66  YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLASMTAEMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P      
Sbjct: 126 VTGMPAPDLIADGLDIVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQYGTPEK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233
                       P  M +F+WL    RP     +  P     Q+        N   ++++
Sbjct: 181 ------------PSDMANFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA +P
Sbjct: 229 WLNAGAGIAYVP 240


>gi|238026873|ref|YP_002911104.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237876067|gb|ACR28400.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 300

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R LTLT +GS  
Sbjct: 6   QIETFIAVAAKGSLSAAAHAEGVAPAIIGRRIDALEERLGVKLLVRTTRKLTLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + ++  +  +    VK SG LR++     G+  +   +  F   +PD+ I L
Sbjct: 66  LEDCQRIVNDMQNAEASVSAGGVKASGHLRVSGPAGFGRRHVAPLVPAFTAAHPDVSITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P ++ +L
Sbjct: 126 DLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGTPATLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  +    L     +   W    D      R+   ++ +    + ++C+ G G+A   
Sbjct: 185 AGHQCLA---LAANANQQRGWTFQHDGGTVSIRVNGTMECSDGAVLHEWCLDGHGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  + +      +++ F +F+
Sbjct: 242 WWEVGADIRAGRLVSVLDAFAAPPIGIHAVFAQRRHLPLRVRLFLDFL 289


>gi|170737251|ref|YP_001778511.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819439|gb|ACA94021.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 306

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 135/285 (47%), Gaps = 7/285 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A  GS++ AA  L ++ S+IS+ I  LE    IKLF R  R LTLT++G  LH  
Sbjct: 14  AFSRAASLGSYSAAARALGVTPSAISKSIQRLERHFEIKLFNRTTRSLTLTQEGRDLHER 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           T  +  ++E  +     +  +P+G L++   + +G +L+   L  F   +P + I L L 
Sbjct: 74  TLRLLSEMEAIEQAAASARSEPAGILKVTAPLPIGVHLIAPALPAFRQRFPKLSIDLRLG 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+  +  D A+R+   +  S L+ R L   ++ AYA+P YL     P    EL  H
Sbjct: 134 DHFVDLVGEGIDVAVRVGD-LTGSRLVSRALSPHYIGAYASPDYLAKRGVPRHPDELVDH 192

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           + + F        +   W  AT + P+     + + V++  ++      G G+ + P Y+
Sbjct: 193 DCVNF--RFQSSGQVLRWTFATDEGPLSLTPDADIVVDTSDAVAAVMAAGGGVGISPTYV 250

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                    LV I+ + + P  T+   +PE+ +++  +K    ++
Sbjct: 251 AASYVRRGELVPILTEFVEPRSTITALWPESRRSSPNVKVLLAYL 295


>gi|83647489|ref|YP_435924.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83635532|gb|ABC31499.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 296

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 137/287 (47%), Gaps = 17/287 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V + G F+ A  +L+LS+  +S+ +  LE  +G +LF+R  R + LT  G   +
Sbjct: 1   MRAFCAVVQEGGFSAAGRKLNLSKVLVSKYVGQLEDRLGARLFHRTTRKVRLTPTGEAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  +L+  +  +++   +P G LRIA      +  L   +   L  YP + + + 
Sbjct: 61  LRVSPLLRELDDIEARVRDEHGEPEGLLRIAAPASFAEIHLMPLVALMLEKYPGLTLDVR 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A+R+   +Q SSL+ +KL  I +   A   YL+  + P S  +L 
Sbjct: 121 LADRYVDLLEEQVDLAVRIGY-LQDSSLVAQKLADIPIVWCAGAAYLERRKAPQSPDDLA 179

Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H +I     + GD  P   E       V R     R+S   VNS  +  +  + G G+A
Sbjct: 180 EHCVIFDSNYSGGDYWPVPRE-----GGVTRQPMRKRVS---VNSARAAKELALAGMGLA 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            LP +++ D   +  L  ++++    +  VY  YP     + +++ F
Sbjct: 232 RLPAFVIGDELASGELRPVLQEYWPEASAVYAVYPHRRHLSARVRLF 278


>gi|26247794|ref|NP_753834.1| putative transcriptional regulator YcjZ [Escherichia coli CFT073]
 gi|26108196|gb|AAN80396.1|AE016760_255 Hypothetical transcriptional regulator ycjZ [Escherichia coli
           CFT073]
          Length = 315

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 10/205 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 18  NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 77

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 78  ERIIACLEPRIDELERELESLIQLNGAPSGNIRLSAGEHAARSLVWPKLKSFLREYPEIN 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    +P Y      P + 
Sbjct: 138 VELVVDNGFVDIVDGRFDAGIRLGESVDKDMIAVRIGPDMRMAMVGSPAYFAANPAPETP 197

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL 208
            EL  H          +C+ +  W+
Sbjct: 198 HELQNH----------RCINNVTWI 212


>gi|325131644|gb|EGC54350.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M6190]
 gi|325139008|gb|EGC61555.1| transcriptional regulator, LysR family [Neisseria meningitidis
           ES14902]
          Length = 303

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA  L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAAGALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184


>gi|154252920|ref|YP_001413744.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gi|154156870|gb|ABS64087.1| transcriptional regulator, LysR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 319

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 14/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+ LR F  VA +GS + A +QL ++ +++ R+++ LE ++G +LF R   G  LT  
Sbjct: 1   MNWNDLRFFLAVAAAGSLSGAGQQLGVNTTTVLRRVASLEDDLGARLFERERTGYRLTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL      V  +L     +   +     G +R+A    +  +LL   L  F   +P +
Sbjct: 61  GEKLVEALEPVDRRLSALPRDFAAAGEGAEGTVRLAAGEVVASSLLAPELAAFRRDHPGL 120

Query: 123 QIQLILDNK--------DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
           +++++ D +         I   +   D A+RL +P Q   L+ RK+  +    YA P YL
Sbjct: 121 ELEILTDPRLASVGPAPRIGNPLKDVDVALRLARPTQGDMLM-RKVGDMAYGLYATPTYL 179

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
                P  +  +  H+LI F    PK       +    R     R++ L+ +S L+  + 
Sbjct: 180 DKHGRPSGMAAIAGHDLIGF----PKSETPLGPVWWFSRAEKSARVA-LRSSSVLARAEA 234

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              G G+A LP  +   + +L R+       S  ++      L     ++A   F+
Sbjct: 235 ARQGLGLAALPCILGDADADLERVFGPDDIGSLEMWLMARNDLAQLAHVRAVMEFV 290


>gi|167644480|ref|YP_001682143.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167346910|gb|ABZ69645.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 293

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 129/286 (45%), Gaps = 17/286 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V ++GSF+ A  +L L+Q +++RQI  LE  +G +LF R  RG++ T   +
Sbjct: 7   WDLYRTFAAVLQTGSFSAAGRRLGLTQPTVARQIEALEMALGAELFVRTHRGMSATAAAA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +L      +   L+TT   L  S+  PS   G +RI     +G   L   L      +P 
Sbjct: 67  RLRPYADTL---LQTTA-ALVRSAAPPSAVGGTVRITAGHTVGTEALPPILAGLRRAHPQ 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L +   D+    AD A+R+ +P Q  +L+ R++ T+ +  YA   YL     P+
Sbjct: 123 LHLELSLSDTLEDLLGRKADVAVRMVEPTQ-KALVARRVNTVEIGLYAHRDYLTLRGTPV 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GS 239
               L+  +LI F    P         A +DR       S   V +     Q+  +  G 
Sbjct: 182 DTPALEGFDLIGFDTETPTTRAAAVVHAWLDR-------SRFVVRTDSEAGQFAAIRSGL 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           GI      +    P LVR++E      F ++    E+L++    +A
Sbjct: 235 GIGYCQTRLAAGAPELVRVLESDFALYFGMWVAMHESLRSDPACRA 280


>gi|162662269|gb|EDQ49166.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 369

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 10/240 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A +GSF  AAE+L L++S++ + ++ LE  +G +LF R  R L LTE G   +  
Sbjct: 14  AFVASAEAGSFAQAAERLGLTRSAVGKAVARLEEHLGARLFVRTTRSLGLTEDGQMFYER 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            ++    L+  +  L+    +  G+LRI+  +  G++ +   L E   L+P ++I+    
Sbjct: 74  CAQALEDLDAARHMLEAGRREVVGRLRISAPVVFGRHHVAPLLLELAQLHPRLRIEASFT 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D + D  D AIR  +   S  L+ R+L    M   A+P YL+    P S+ +L  H
Sbjct: 134 DRQLDFADDGIDLAIRSGELPDSDWLVARRLGMQTMVLCASPAYLQAHGAPRSVADLAGH 193

Query: 190 NLITF---GDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
             I +   G   P       WLA  D  +  P +   L  +   +I    + G+G+A +P
Sbjct: 194 RCIAYMRSGRAAPW------WLAGEDGSLAAPVLEPALGFDDIETIATATLQGAGLAHMP 247


>gi|113867216|ref|YP_725705.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113525992|emb|CAJ92337.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 295

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 146/287 (50%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ + ++ LE  +G++LF+R  R +TLT +G+     
Sbjct: 9   VFVQVAETRSFVAAGRLLGVSASAVGKSVARLEERLGVRLFHRSTRSVTLTAEGTLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  V  ++E  ++EL E++  P G+LR+  ++ L  +L+   L +F+  YPDI++ L   
Sbjct: 69  SRRVLAEIEAAELELAEATAAPRGRLRV--SLPLVSSLVLPVLGDFMRAYPDIELDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R+L        A+P YL     P    +L  H
Sbjct: 127 DQLVDVIEEGFDAVVRTGEP-ADSRLSARRLGAFQAMLVASPDYLAQRGTPKLPADLTGH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALLPD 246
             + +    P   +   W   + R  GEP ++    +  N+  + + + + G GIA LPD
Sbjct: 186 ACLHY--RFPHTGKLEAW--PLRRAPGEPELALPTSMICNNIETRLCFALRGLGIACLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++   + +L +++   + P+   +  +P +   + K++A  +F+
Sbjct: 242 FAIREQLADGSLCQVLAGHVGPAKAFHVLWPASRHPSPKVRALVDFL 288


>gi|13471878|ref|NP_103445.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022622|dbj|BAB49231.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 301

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 133/297 (44%), Gaps = 48/297 (16%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA  GSFT AA+ L + +   S  +  LE +VG++L +R  R + LTE G   H  
Sbjct: 9   IFITVAEMGSFTRAADSLGIQKGRASTAVRKLEEDVGVRLLHRTTRSVQLTEDGRAFHAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   ++          V   G+LR+    ++ +  +   L +F+  +P++++++   
Sbjct: 69  ARDLLADVDDLHSMFASDRVALRGRLRVDLPTEVARTTIVPALPDFMATHPELELEVSST 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK- 188
           ++ +D+  +  DC +RL  PI+  +LI R L  + M   A+P YL     P S+++L + 
Sbjct: 129 DRQVDLVQEGFDCVLRL-GPIRDETLIARPLGLLRMVNAASPAYLARYGVPRSLEDLKRQ 187

Query: 189 -HNLITFGDLI---PKCME--DFNWLATVDRPIGEPRISCLQVNS--------------- 227
            H  I F  ++   P   E  D +  AT+  P        L VNS               
Sbjct: 188 EHRTIHFSTILGARPHGWEYPDGDNYATLQLP------GALHVNSAQTYEAAALAGLGLI 241

Query: 228 ---YLSIMQYCVLGSGIALLPDY---------IVKDNPNLVR-------IMEDVITP 265
               L + QY   G+ + ++PD+         +V    NL R        +EDV+TP
Sbjct: 242 QAPLLGVGQYLESGALVEIIPDFRRRALAVSLVVAHRSNLSRRVRAFMKWIEDVLTP 298


>gi|319763770|ref|YP_004127707.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330823966|ref|YP_004387269.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317118331|gb|ADV00820.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329309338|gb|AEB83753.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 309

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 144/299 (48%), Gaps = 20/299 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +++F  V  +GSFT  A +   +Q ++++QI+ +E  + ++L  R+ RG++LTE G+ 
Sbjct: 5   DAMQMFVRVVETGSFTRVAHEFTTTQPTVTKQIAAMEARLKVRLLNRNTRGVSLTEPGTL 64

Query: 66  LHRVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     + + +   +  +++++S V   G+LR+ +++  G+ ++     EF+   P +Q
Sbjct: 65  YYEKCKAIVNDVADAESVVKVRQSQVH--GQLRVGSSVAFGRRVVVPLALEFMQQNPQVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L  +++  D+     D A+RL K +  SSL  R L        A+P YLK    P   
Sbjct: 123 IDLSFEDRYTDLVASGIDVALRLGK-LADSSLGARTLGVNPWVLVASPTYLKKHGTPRRP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGS 239
            +L +H  + +  +        N L  +    GE    P    L+ N+  +++       
Sbjct: 182 SDLKEHATLIYSSV------QGNDLWRLRNASGEAVSVPVTGRLRSNNLSALLAAARSHM 235

Query: 240 GIALLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA LP Y+  ++    R++E + T   P   ++  YP       K++AF    FL+ R
Sbjct: 236 GIAALPWYVAHESLKAARVVEVLKTCRLPEQEIHAVYPSPRLVPQKVQAF--IAFLQGR 292


>gi|261250590|ref|ZP_05943165.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
 gi|260939159|gb|EEX95146.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
          Length = 295

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 141/288 (48%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L++S+S +SRQIS LE+ +G+ L  R  R L LT  G + +
Sbjct: 10  IRSFVLIAQLGNFTKAAEALNVSRSHVSRQISALESRMGVSLVTRTTRSLKLTYAGERFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           +       ++E   +   + + +  G +RI +    LG++++   + +F+  + DI +++
Sbjct: 70  KQCESALMQVEQALLAAVDDTEQVQGHIRINSVGGPLGEDVVANYVGQFMRQHQDITVEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID+  D  D A R+ K ++ ++ I R L  I M   A+P YL    EP   ++L
Sbjct: 130 DFSSPRIDLIEDQFDIAFRMGK-LEDANFIGRHLSDIEMVTLASPDYLAIYGEPEHPKQL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H ++         +  +++    D    E  +S  L   +  +++   + G+GI  +P
Sbjct: 189 LEHRILR------GSVTRWSYQHQADESRYEVSVSAHLVCKNGRALVAGALQGNGIIRVP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                   +  +LV IM D    S   Y  Y        +LKAF +F+
Sbjct: 243 AMYCMGEIEQGSLVPIMSDWKVESVPFYAIYHRDKYQPKRLKAFIDFM 290


>gi|188581364|ref|YP_001924809.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179344862|gb|ACB80274.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 313

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 26/300 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF VVA + SF  AAE+L LS++++S+ ++ LET +G +LF+R +R L LTE G
Sbjct: 6   DFEAWAVFAVVADALSFARAAEELGLSKATVSKAVARLETRLGARLFHRTSRRLALTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  +    +++  P G++R+A  +  G   L   L EFL  + ++ 
Sbjct: 66  RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHLAPVLPEFLAAHREVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     A P YL+    P   
Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLERYGAPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGE-----PRISCLQVNSYLSIMQ 233
           ++L              C+  + +L T DR       GE     P    L+ N+  ++  
Sbjct: 185 EDLKSR----------ACL-GYAYLPTPDRWPFTNAAGETVAIIPE-GPLRANNADALAP 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G G+A+ PD+ + ++     L R+M D   P   +    P  L    ++ A   F+
Sbjct: 233 ALRAGLGLAVQPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292


>gi|117918705|ref|YP_867897.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611037|gb|ABK46491.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 305

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 140/289 (48%), Gaps = 16/289 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SFT A+  L LS++ +S  ++  ET +G +L  R  R + LT+ G   +
Sbjct: 8   MQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLTQDGISCY 67

Query: 68  RVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +   Y +LE+   +LQ + +  SG+LR+  +  + +NL+  +L +F+  YP I++
Sbjct: 68  ERCKNLLTDYQELESL-FQLQATQI--SGRLRVDMSTGIARNLVLPHLPDFIEQYPQIEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +DI  +  DC IR+   +Q   +I +K+    M    +P Y+     P +I+
Sbjct: 125 ELSSTDRKVDIVAEGFDCVIRV-GSVQQEGVIAKKIGHFKMLNCVSPSYITKYGRPSNIE 183

Query: 185 ELD-KHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240
           EL   H LI +   +      F +L+  +     +  P++  + VN+  +    C+ G G
Sbjct: 184 ELSHGHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKL--ITVNNADAYSAACLAGLG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I   P+  V        L+ I+ D   PS  V   YP     + +L+ F
Sbjct: 242 IIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVF 290


>gi|332534279|ref|ZP_08410123.1| transcriptional regulator, LysR family, in formaldehyde
           detoxification operon [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036275|gb|EGI72747.1| transcriptional regulator, LysR family, in formaldehyde
           detoxification operon [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 317

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 131/275 (47%), Gaps = 15/275 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  V   GSFT AA+ L LS + ISR ++ LE  +  +L  R  R + LT++G 
Sbjct: 31  WDGIDEFIAVGEEGSFTAAAKMLGLSVAHISRHVTALEQRLNTQLLTRTTRKVVLTKEGE 90

Query: 65  -KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             LH++    +   E TQ   Q+ S  P GK+++   +  G++ +   +  F+   P+++
Sbjct: 91  VYLHQIKHLQHAMDEATQGLAQQQST-PKGKIKLTAPVMYGESFIMPIVHNFMKDQPEVE 149

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +   L N+  ++     D AIRL   ++ SSL  R+L        AAP YL    EP ++
Sbjct: 150 VVATLSNEQENLLEGGFDLAIRLGH-LKDSSLKARRLSARRFIMCAAPQYLTRFGEPHTL 208

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL+ H  +       +  E+       D+ I   +I+  LQ NS  +++     G GI 
Sbjct: 209 GELNSHECLIGNSSYWRVNENGR-----DKHI---KIAGRLQCNSGWALVDGAKKGLGIV 260

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274
            LPDY +++  N   LV I+         V+  YP
Sbjct: 261 QLPDYYIENEINSGQLVPILTPYQPQQEGVWGVYP 295


>gi|241207292|ref|YP_002978388.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861182|gb|ACS58849.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 296

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 138/299 (46%), Gaps = 15/299 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+ + L +F     SGSFT AA  L + +S++S++++ LE  +G++L  R +R   LTE 
Sbjct: 4   FNLNDLHLFVQAVDSGSFTAAARHLGIPKSTVSKRVAELERRLGVRLIQRTSRSFALTEL 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +       + E  +  ++    +P+G +R+  ++   Q  L  +L      YP +
Sbjct: 64  GREFFQHAQASIIEAEMAEGIVRRHLAEPAGSVRLTASVPTAQFTLTEHLPALAARYPKL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ + + ++ +DI  +  D A+R  R P+  S+L+QRKL +      A+P Y+    EP 
Sbjct: 124 RLSVHVTDRFVDIVQEGFDIALRSHRGPLPDSALVQRKLASHPFFILASPDYVGAHGEPR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             +EL +H  I     +    ED  W           R+ S +  +    +M+  + G G
Sbjct: 184 RPEELAEHATI-----MTSLTED-QWRLYSGGDEALVRLHSVMAADEPYVLMEMAMSGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKAR 295
           I  LP  + +    +  LVR++ +    S       P      G+L A R  + FL  R
Sbjct: 238 ITCLPTSVCRKALADGRLVRVLPEWTAGSIETTILMPH---RRGQLPAVRAVVDFLAER 293


>gi|153837786|ref|ZP_01990453.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149748807|gb|EDM59646.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 298

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 101/187 (54%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT  G + +
Sbjct: 10  IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTHAGERFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++   I   + + +  G +R+      +G++++   + EF+  YP + I L
Sbjct: 70  HDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYPSVSIDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID+  D  D A R+ + +  +  + RKL+T+ M   A+P Y++    P   +EL
Sbjct: 130 DFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMPKHPKEL 188

Query: 187 DKHNLIT 193
            +H  +T
Sbjct: 189 AEHRTLT 195


>gi|270265357|ref|ZP_06193618.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270040761|gb|EFA13864.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 299

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 144/295 (48%), Gaps = 18/295 (6%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D  D +R+F  V    SFT AA+ ++L +S+++  I  LE  + ++L  R  R ++ 
Sbjct: 1   MTMDRIDAMRLFTRVVEQRSFTQAAQDMNLPRSTVTDAIKQLEARLQVRLLQRTTRHVSP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G   ++    +   +E    E+  +  KP G LRI     L ++ L   L +FL  Y
Sbjct: 61  TLDGEAYYQRCLIILADIEDA--EMAFAGAKPRGLLRIDVHGTLARHFLLPGLPDFLAQY 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI+  +   ++ +D   +  DC +R+ K ++ S +  R+L  +     AAP YL+    
Sbjct: 119 PDIEFYMSEGDRLVDPVREGIDCVVRVGK-LKDSDMAARRLGELEEITCAAPEYLRRFGT 177

Query: 180 PLSIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
           PLSI +L  H ++ F     G ++P    +FN +  + + +  P  S + V++  S++  
Sbjct: 178 PLSIDQLQGHRMVGFRSSATGAVMPL---EFN-VNGLPQQVTLP--STVSVSAAESLVAA 231

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +G GI  +P Y + D   N +L+ ++    +    V   YP   + + +++ F
Sbjct: 232 ARMGLGIIQVPRYHLLDDLTNGSLLPLLPQCPSTPMPVSLLYPRNRQLSPRVRVF 286


>gi|229589137|ref|YP_002871256.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361003|emb|CAY47865.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 298

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 23/291 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F + A  GS+  AAE+L+LS   +++ +S LE  +G +L  R  R  +LTE GS  +
Sbjct: 8   MSAFVMAAELGSYARAAERLNLSPQMVAKHVSALEQRLGARLLNRTTRRQSLTELGSAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + E      Q  +  P GKL+I   +  G   L   + EFL   P+++I L 
Sbjct: 68  ERCKHILTEAEAADSLAQIMNDTPRGKLKITAPVTFGSYSLMPLITEFLRDNPEVEIDLH 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  + A R+  P+ ++SL  R L    +   A+P YL     P    +L 
Sbjct: 128 LTDRFVDLVDEGYEAAFRI-GPLATNSLTARPLAPYRLVVCASPAYLAARGTPQVPADLM 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR---------PIGEPRISCLQVNSYLSIMQYCVLG 238
            H          +C+    W    DR         P      S LQ+N   ++M   + G
Sbjct: 187 HH----------ECLGYAFWSRPADREWVLYQGPTPYRVQVASRLQINESRALMSAALEG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GI L P+  ++       LV+++ +   PS  ++  Y    + T KL+ F
Sbjct: 237 FGIVLGPEDFLRPALLRGELVQVLANFEAPSRPMHLLYTANRQRTAKLRRF 287


>gi|152969866|ref|YP_001334975.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954715|gb|ABR76745.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 294

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 125/264 (47%), Gaps = 13/264 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+      +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKHRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI     D  +RL   + S  +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIIAQRFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L  H  I   FGD        + W   VD  +    P+      +SY+   +   LG 
Sbjct: 186 ADLVAHPCIAYQFGD-----GSLYAWELNVDGKKITHPPQGQWAFADSYME-AKAARLGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIME 260
           G+A +P+ ++ D+     L+R+++
Sbjct: 240 GLAYVPEELITDDLAQGTLIRVLQ 263


>gi|226943087|ref|YP_002798160.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226718014|gb|ACO77185.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 304

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 140/290 (48%), Gaps = 11/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  V R   F  AAE+L LS + +S++I  LE+ +  +L +R  R + LTE G +
Sbjct: 12  EDLRVFLTVIRKQGFAAAAEELGLSPAYVSKRIHILESTLKARLLHRTTRRIALTEDGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R    +   L+    EL ++   P G L I++T   G+N +   +      YP+++I+
Sbjct: 72  AQRWAVRILGDLDDLFDELSQARQTPRGLLHISSTFGFGRNHVAPAISLLAERYPELEIR 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +DI  +  D  IR+   +    + +R LV+      A P YL     P S+ +
Sbjct: 132 LEVFDRVVDIVGEGFDLEIRVGDDLPGQHICKR-LVSNKRVLCATPGYLARRGTPASLDD 190

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L  H+ +    ++ +    F  W  + +      R+S  L  N+   ++++ + G GI L
Sbjct: 191 LQHHDCL----VLKERNNPFGIWHLSRNGKPASVRVSGPLSSNNGEIVLEWALHGRGILL 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + VK   +   LV+++ D  + S  V+  YP  L N+ KL+    F+
Sbjct: 247 RSLWDVKPLLEQGRLVQVLHDY-SQSANVWAVYPTRLSNSAKLRVCVEFL 295


>gi|229526285|ref|ZP_04415689.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229336443|gb|EEO01461.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
          Length = 295

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 17/280 (6%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++QLI         +       R  + + S S     L       YA+P YL     P 
Sbjct: 121 IRVQLITTTPGQLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           ++QEL +HN++ +G+      + F  + T        R++        +  ++      G
Sbjct: 181 TLQELTEHNVLCWGE------QTFREIKTAQ----GKRLTLTGNFATTNPEALFYAGKAG 230

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            GI +    ++K+     NLVR++ DV     TVY  YP+
Sbjct: 231 MGIIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPK 270


>gi|237729981|ref|ZP_04560462.1| transcriptional activator TtdR [Citrobacter sp. 30_2]
 gi|226908587|gb|EEH94505.1| transcriptional activator TtdR [Citrobacter sp. 30_2]
          Length = 313

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE+ +G  L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILESTLGTTLLSRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +    ++ +    P+G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHAQAILAGYQHLVDDVTQLKTCPAGMIRIGCSFGFGRSYIAPAITELMHSYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID++ D  D  IR+   I     I   L        AAP YL+   EP+++QEL 
Sbjct: 131 LYDRQIDLAQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPPYLQKYGEPMTLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     +++  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGVWELDNGQEKKSVKVAGHLSSNSGEIVLQWALQGKGIMLRSE 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+    +  LVR++ D    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVQPFLASGELVRVLPDY-AQSANIWAVYQEPLYRSVKLRVCVEFL 292


>gi|332289113|ref|YP_004419965.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
 gi|330432009|gb|AEC17068.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
          Length = 295

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 137/291 (47%), Gaps = 12/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++LR F +VA++GSFT AA +L +S S++S  +  LE ++ IKLF+R  R +  TE G
Sbjct: 4   NMNELRSFIIVAQTGSFTKAAGRLGVSTSALSHSMRKLEEQLKIKLFHRTTRSVATTEAG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +    ++  +E     L       +G LRI     +   ++   L  F+  YP+++
Sbjct: 64  EQLFKQLFPLFESIEDNVNALSHFRNTLNGTLRINGADHVFLYVIWDKLLRFMEKYPEVK 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D K  DI     D  IRL K +    +  R    + M   A P YL+    P +I
Sbjct: 124 LELISDMKFTDIVAGRFDAGIRLGKEVDKDMIAIRISDDMQMALIATPQYLEQYGIPKTI 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----VNSYLSIMQYCVLG 238
            +L  H  +     +P     F W   +  P G+  +  +      VN+     + C+  
Sbjct: 184 DDLTSHQCLCVR--MPTSEGIFPWEFCM--PKGKEVVKFMPSGRFVVNNNFLAKKACLSH 239

Query: 239 SGIALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+AL+P D ++K+  +  +V ++++        Y  YP   +++   KA 
Sbjct: 240 LGLALMPKDRVLKELKSGEIVEVLQNYAMRYEGYYLYYPNRRQDSPLFKAL 290


>gi|302061339|ref|ZP_07252880.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
          Length = 299

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A  GSFT  AE + + +  ++R I  LE  + ++LF R  R + LT +G + +
Sbjct: 1   MQVFAKLAELGSFTWVAEAMQVGRPHLTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60

Query: 68  -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV S +    ETT +  +  S    G+LRI   +   Q      L+ F   +PDI + L
Sbjct: 61  ERVKSNLADLAETTSMFDRNGSTL-RGRLRIDIPVAFSQRSFMETLRGFTRAFPDIDVVL 119

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+  +  DCA+R+ + +  SSL+ R +    M   AAP YL+    P ++++L
Sbjct: 120 GVTDRTVDLVAEGIDCALRIGE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTPETLEDL 178

Query: 187 DKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +H  ++F  L  +      W   L   D P   P    + VN   + +Q  + G GI  
Sbjct: 179 KRHCGVSF--LSGQNNRPLPWHFSLNGEDLPY--PAQGAITVNESNAYVQCGLAGFGILQ 234

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P   V+    +  LV ++E        V   YP       +++AF  ++
Sbjct: 235 APGITVESFLASGELVEVLEAYRPLPRPVSVLYPSRTHLAPQVQAFVEWL 284


>gi|261391824|emb|CAX49281.1| putative HTH-type transcriptional regulator [Neisseria meningitidis
           8013]
 gi|308388509|gb|ADO30829.1| probable LysR-family transcriptional regulator [Neisseria
           meningitidis alpha710]
 gi|325137116|gb|EGC59712.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M0579]
 gi|325141515|gb|EGC63985.1| transcriptional regulator, LysR family [Neisseria meningitidis
           961-5945]
          Length = 303

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA  L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAAGALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184


>gi|182677784|ref|YP_001831930.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633667|gb|ACB94441.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 314

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 149/301 (49%), Gaps = 17/301 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D+  + VF  +  +GS + AA +L LS + +SR+++ LE  +G++L  R  R L  T
Sbjct: 10  MGHDFLDMLVFVRIIEAGSLSGAARELDLSLAVVSRRLARLEERLGVRLINRTTRTLAPT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+  H   + +   L+  + E+ +     +G LR+ + +  GQ  L   L +F  L+P
Sbjct: 70  EEGAAFHARCARILADLDEAEQEVTQGRDVATGLLRLTSPVAFGQRWLAPLLHDFQALHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +QI L   +  +++     D AIRL   +  SSLI R++   +    AAP YL     P
Sbjct: 130 RLQIYLDASDTVMNLVESGYDLAIRL-GGLSDSSLIARQIAPDYRVICAAPSYLARRGRP 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            +I++L +H+ I  G      M+  +W     R I   ++     +++ ++ Q + + G+
Sbjct: 189 HTIEDLAQHDCIIHGR---PPMD--HWTFADGRTI---KVRGTLASNHGALAQSWALQGA 240

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+ L   + V+D+    R+  +++ P+F      ++  YP +     +++   +++  + 
Sbjct: 241 GLVLKSMWDVRDDVIAGRL--EIVLPNFPLPMTPIHAVYPHSRYAAARVRLCVDYLIERL 298

Query: 295 R 295
           R
Sbjct: 299 R 299


>gi|118592916|ref|ZP_01550304.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118434450|gb|EAV41103.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 299

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 142/306 (46%), Gaps = 23/306 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  + LRVF  V   GS T     L L+ +  S++I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LESLRVFTRVVELGSITSGGRDLRLTPAVASKRIKELEKHLGVRLFNRTTRSLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    +    +E  +  +   S  P G +R+   + +G+ ++   +  F+  +P
Sbjct: 60  EVGKVFYDYAVKALESIEDAEAAVASFSDTPRGVIRVTAPLGVGRRIIAPLVPRFVEKFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
             ++ + L ++ +DI  D  D A  +  P Q S+L  RK+        AAP YL+    P
Sbjct: 120 ATEVHMRLSDRKVDILSDGLDVAFFIGTP-QDSNLKLRKISDCPRVLCAAPEYLEKHGTP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IM 232
            +  +L  D+HN +      P+  E + W+  +  P G PR   LQV+  +       + 
Sbjct: 179 RTPDDLLSDEHNCLLL--RYPRSPE-YYWV--LQTPAG-PR--KLQVSGKMDADHGDVLT 230

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRN 288
            + + G GI   P + V    D+  LV I++D   P  T++ C YP       K++ F +
Sbjct: 231 DWALSGYGIVNKPRFDVAQHLDSGRLVEILKDTPPPP-TIFGCLYPHRRLQDPKIRHFVD 289

Query: 289 FIFLKA 294
           F+   A
Sbjct: 290 FVISNA 295


>gi|121727008|ref|ZP_01680204.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147672172|ref|YP_001214899.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|262169006|ref|ZP_06036700.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|121630642|gb|EAX63031.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|146314555|gb|ABQ19095.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|227014713|gb|ACP10922.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|262022705|gb|EEY41412.1| transcriptional regulator [Vibrio cholerae RC27]
          Length = 295

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 17/280 (6%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++QLI         +       R  + + S S     L       YA+P YL     P 
Sbjct: 121 IRVQLITTTPGQLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           ++QEL +HN++ +G+      + F  + T        R++        +  ++      G
Sbjct: 181 TLQELTEHNVLCWGE------QTFREVKTAQ----GKRLTLTGNFATTNPEALFYAGKAG 230

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            GI +    ++K+     NLVR++ DV     TVY  YP+
Sbjct: 231 MGIIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPK 270


>gi|296159860|ref|ZP_06842681.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295889843|gb|EFG69640.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 297

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 147/302 (48%), Gaps = 35/302 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L L+Q ++SRQI  LE      LF RHA+GLTLT +G  
Sbjct: 8   NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEDYYKFPLFKRHAKGLTLTAEGEL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E + ++E  +I L+ +  +    L++ T +      +   +  F   YP++ +Q
Sbjct: 68  LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQAEYPELHVQ 122

Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +      D+D  ++  D AI         +Q+ SL + +L  +      AP  LK+  +P
Sbjct: 123 ITTTWQHDVDFQLEPFDAAIIYGSSPGADVQAVSLFEERLTPV-----CAPDLLKD--KP 175

Query: 181 LS-IQELDKHNLITFGDLIPKCMEDFN-WLATV------DRPIGE----PRISCLQVNSY 228
           L+ + +L +H L+       +   D+  WLA V      + P+ +    P    L + + 
Sbjct: 176 LAELADLARHTLLH----PTRDHRDWKMWLAKVTEVDAANAPVIDAEHGPSFDTLDMATN 231

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            ++  + V  S +AL+ + +      LVR  + V+   +  YF YP+++ +  KL  FR+
Sbjct: 232 AALQGFGVAISDLALIDEDVAAK--RLVRPFDTVLKTGWRYYFVYPDSVAHQQKLNLFRD 289

Query: 289 FI 290
           +I
Sbjct: 290 WI 291


>gi|289675293|ref|ZP_06496183.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
          Length = 264

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 11/262 (4%)

Query: 32  SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91
           + +SRQI  LE  +  +L YR  R + LTE G         +    E     + + + +P
Sbjct: 1   AHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQTFLHHCQRLQDGREEALRAVGDLASEP 60

Query: 92  SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151
            G LR+   +  G+  +   +  F+ LYP +++ + L N+ +D+  +  D AIRL + +Q
Sbjct: 61  KGLLRMTCAVAYGERFITPLVTRFMDLYPHLRVDIELSNETLDLVHEGMDLAIRLGR-LQ 119

Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211
            S L+  +L    M+  A+P Y++    P S+ EL++HN +  G        D   L   
Sbjct: 120 DSRLVATRLAPRQMYLCASPSYIERYGRPHSLSELNRHNCLIGGS-------DTWQLQQN 172

Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFT 268
            R   +      + NS  +++   + G G+  LPDY V+ + N   LV ++E    P+  
Sbjct: 173 GREFSQRVQGNWRCNSGQAVLDAALHGVGLCQLPDYYVQKHLNDGTLVSLLEAHQPPNTA 232

Query: 269 VYFCYPEALKNTGKLKAFRNFI 290
           V+  YP+    + K++   +++
Sbjct: 233 VWGLYPQQRHLSPKVRKLVDYL 254


>gi|194289863|ref|YP_002005770.1| lysr family transcription regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223698|emb|CAQ69705.1| putative TRANSCRIPTION REGULATOR; LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 338

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 125/272 (45%), Gaps = 6/272 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R ++LT +GS  
Sbjct: 28  QLETFVSVASRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRKISLTFEGSAF 87

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + L   +  +    VK SG LR+      G+  +   +  F+  +PD+ I L
Sbjct: 88  LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGYGRKHVAPLVPLFIESHPDVSITL 147

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL     P + ++L
Sbjct: 148 DLSDRVVDLVNEGFDCAIRL-GDLPDSSLVSIRLAETRRVVVAAPEYLARAGRPQAPEDL 206

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + FG      M+         R +       ++ +    + ++C+ G+G+A    
Sbjct: 207 QRHNCLAFG--ASANMQRGWVFQEEGRAVTVKVGGTMECSDGAVLHEWCLQGNGLAWRSW 264

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           + V     +  LV ++++   P   ++  +P+
Sbjct: 265 WEVGSEIASGRLVTVLDEFQAPPIGIHAVFPQ 296


>gi|49084644|gb|AAT51219.1| PA0123 [synthetic construct]
          Length = 303

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 26/290 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GS   AA+ L ++ S++S+QI  LE+   + L +R  R LTLTE G   +
Sbjct: 7   MAIFATVVDKGSMAAAAQSLGMTPSTVSQQIRKLESRAQVTLLHRATRRLTLTEAGEAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +++    E  +  L E    P G+LR+A  +     L+   LK  L  +  +++QL 
Sbjct: 67  RSCAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGFSGTLITQALKPLLENHRQLRLQLF 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184
             ++ ID+  +  D AIR+   +  SSL+ R L        AAP YL+       P  + 
Sbjct: 127 FQDERIDLVAERIDLAIRVGN-LADSSLVARHLGDWSSVLCAAPAYLRQRAPINRPEQLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVL 237
           E+D  +L T   L        N L T+  P G       EPR++    N  L++ Q+ + 
Sbjct: 186 EVDWISLNTSNHL--------NHL-TLSGPGGEVCKLRLEPRVAA---NGMLAVRQFTLD 233

Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G G++  P   V+D  N   L +++ +   P   +Y   P       K+K
Sbjct: 234 GLGVSYQPLPEVRDALNDGRLQQLLPEWRIPGLGIYAVTPRREAQPAKVK 283


>gi|77465303|ref|YP_354806.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|221369311|ref|YP_002520407.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
 gi|332560909|ref|ZP_08415227.1| Transcriptional regulator, LysR family protein [Rhodobacter
           sphaeroides WS8N]
 gi|77389721|gb|ABA80905.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
 gi|221162363|gb|ACM03334.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
 gi|332274707|gb|EGJ20023.1| Transcriptional regulator, LysR family protein [Rhodobacter
           sphaeroides WS8N]
          Length = 313

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 125/261 (47%), Gaps = 12/261 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F WD L+ F  VARSG  + AA QL  S  ++SR+I  LE  + ++LF R+ RG  LT 
Sbjct: 3   NFTWDDLQFFLAVARSGQLSRAARQLRTSHVTVSRRIDRLEAALRMRLFERNPRGYELTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +  + E  Q+EL        G LR+A     G    +  L  F   +P+
Sbjct: 63  VGRRLIETAERMEAETERMQVELLGDGPGQRGVLRMAVPEGFGSWFSRVLLGPFTERFPN 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LI   + + +S   AD  + L  P ++S+    +++   +H YAA  YL    E  
Sbjct: 123 IALELITLPQIMSLSRREADLTVTL-DPPKASTYHSERIMDYTLHIYAAKSYLAQRPEIQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLG 238
           +  +L KH  I +       +E+  +   +D  +GE  P I    + +S  + +     G
Sbjct: 182 TRDDLLKHPFIGY-------IEEMIFAPGLDY-LGEVHPGIRANFKSSSIFNQLAATQNG 233

Query: 239 SGIALLPDYIVKDNPNLVRIM 259
            G+ +LP YI +  P+L  I+
Sbjct: 234 LGLCVLPFYIGRRVPDLEMIL 254


>gi|194437133|ref|ZP_03069232.1| LysR substrate binding domain protein [Escherichia coli 101-1]
 gi|194424116|gb|EDX40104.1| LysR substrate binding domain protein [Escherichia coli 101-1]
          Length = 290

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 128/287 (44%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  F
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLF 289


>gi|103486199|ref|YP_615760.1| LysR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976276|gb|ABF52427.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis
           RB2256]
          Length = 293

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +DW+ L+ F  VA +GS   AA+ + +SQ++++R+I+ LE   G+ LF R   G  LT  
Sbjct: 2   YDWNDLKAFLAVAETGSTLAAAQAMRVSQTTVARRIAALEAATGVTLFERRQAGYALTPV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +      V    +         S    G + +     +   +L   L++    +P I
Sbjct: 62  GEAMLASAVAVRDAADRFGEAASARSRDAGGTVSLTVMEIIAVTILPPILRDLRAEHPAI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL   ++  D++   AD AIR  K    + L+ R++       Y +  Y      P +
Sbjct: 122 HIQLDTSDEARDLAAGAADIAIRSSKQPSGAGLVGRRIADNAWTVYCSCDYADRHGVPHT 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +EL KH  I  G  +    E +  WL    R  G      +Q ++   ++     G G+
Sbjct: 182 REELAKHPFIGGGGGV---WEPYRAWL----RQYGLEESVVMQYDTATGLLSGVRAGMGL 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++LP Y+    P+L+R +      +  ++    E L++  +++   +F+
Sbjct: 235 SVLPAYLADREPDLIRCLPPRSDDTTGLWLLTHERLRHVPRVRLVLDFL 283


>gi|254193704|ref|ZP_04900136.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|169650455|gb|EDS83148.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
          Length = 313

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 126/296 (42%), Gaps = 25/296 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA+ LHL+QS+IS+QI  LE  +G  LF RHARGL LT +G  LH
Sbjct: 13  LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T   +  L  T  +L      P   L+++         L   L EF  L+P   ++L 
Sbjct: 73  EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLAEFHRLHPQTPVRLR 128

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ID   +S D  D AIR   P    +L    L    + A AAP YL   R P    
Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYLD--RHPPRAT 185

Query: 185 ELDKHNLITFGDL-----IPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                +++   D       P+ +E   WL A V    G PR    + N     +   V G
Sbjct: 186 AKWVSSVVPLHDASAWPEAPRYVEWRTWLDAVVPGYAGAPRGP--EFNLASLAIAAAVAG 243

Query: 239 SGIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+ +    +V D     R++      V  P+     C   A     ++KAF  ++
Sbjct: 244 QGVVVCRQALVDDEIARGRLVNVFARRVPAPAQYKAIC---ARPEDARVKAFVGWL 296


>gi|126464767|ref|YP_001045880.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|126106578|gb|ABN79108.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 313

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 125/261 (47%), Gaps = 12/261 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F WD L+ F  VARSG  + AA QL  S  ++SR+I  LE  + ++LF R+ RG  LT 
Sbjct: 3   NFTWDDLQFFLAVARSGQLSRAARQLRTSHVTVSRRIDRLEAALRMRLFERNPRGYELTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +  + E  Q+EL        G LR+A     G    +  L  F   +P+
Sbjct: 63  VGRRLIETAERMEAETERMQVELLGDGPGQRGVLRMAVPEGFGSWFSRVLLGPFTERFPN 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LI   + + +S   AD  + L  P ++S+    +++   +H YAA  YL    E  
Sbjct: 123 IALELITLPQIMSLSRREADLTVTL-DPPKASTYHSERIMDYTLHIYAAKSYLAQRPEIQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISC-LQVNSYLSIMQYCVLG 238
           +  +L KH  I +       +E+  +   +D  +GE  P I    + +S  + +     G
Sbjct: 182 TRDDLLKHPFIGY-------IEEMIFAPGLDY-LGEVHPGIRANFKSSSIFNQLAATQNG 233

Query: 239 SGIALLPDYIVKDNPNLVRIM 259
            G+ +LP YI +  P+L  I+
Sbjct: 234 LGLCVLPFYIGRRVPDLEMIL 254


>gi|15600853|ref|NP_232483.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121590638|ref|ZP_01677973.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|153212872|ref|ZP_01948489.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|153801237|ref|ZP_01955823.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|153819229|ref|ZP_01971896.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153823631|ref|ZP_01976298.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|153825761|ref|ZP_01978428.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|153829005|ref|ZP_01981672.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|227811708|ref|YP_002811718.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229510460|ref|ZP_04399940.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229517409|ref|ZP_04406854.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229522754|ref|ZP_04412170.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
 gi|229527933|ref|ZP_04417324.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229605219|ref|YP_002875923.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254284806|ref|ZP_04959773.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|254850346|ref|ZP_05239696.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746094|ref|ZP_05420041.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|298499945|ref|ZP_07009751.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9657467|gb|AAF95996.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121547531|gb|EAX57636.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|124116250|gb|EAY35070.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124123255|gb|EAY41998.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|126510221|gb|EAZ72815.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126518851|gb|EAZ76074.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|148875536|gb|EDL73671.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|149740600|gb|EDM54711.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|150425591|gb|EDN17367.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|227010850|gb|ACP07061.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229334295|gb|EEN99780.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229340739|gb|EEO05745.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
 gi|229345445|gb|EEO10418.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229352905|gb|EEO17845.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229371705|gb|ACQ62127.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254846051|gb|EET24465.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255735848|gb|EET91246.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|297541926|gb|EFH77977.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|327485313|gb|AEA79719.1| Transcriptional regulator, LysR family [Vibrio cholerae LMA3894-4]
          Length = 295

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 19/281 (6%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I++QLI       +   + D  I R  + + S S     L       YA+P YL     P
Sbjct: 121 IRVQLITTTPG-QLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
            ++QEL +HN++ +G+      + F  + T        R++        +  ++      
Sbjct: 180 QTLQELTEHNVLCWGE------QTFREVKTAQ----GKRLTLTGNFATTNPEALFYAGKA 229

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           G GI +    ++K+     NLVR++ DV     TVY  YP+
Sbjct: 230 GMGIIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPK 270


>gi|329115110|ref|ZP_08243865.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter
           pomorum DM001]
 gi|326695553|gb|EGE47239.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter
           pomorum DM001]
          Length = 323

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 134/294 (45%), Gaps = 16/294 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  R+F  V  + SFTHAAE L + +SS+S  +  LE+ VG +L  R  R +  T  G+ 
Sbjct: 21  DLFRIFARVVEAASFTHAAETLGMPRSSVSAAVQQLESRVGARLLTRTTRSVAPTPDGAA 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   +E  +   ++S     G LR+     +G+ ++   L +FL  YP + ++
Sbjct: 81  FYEHCLRLVADVEEAENLFRQSESAVQGVLRVNMPGRIGRLIVAPALPDFLATYPGLSVE 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +K +++  +  DC +R+  P+Q S LI R++  + +   A+P YL     P    +
Sbjct: 141 LGVTDKAVNLVEEGLDCVLRV-GPLQDSGLIARRMGELKLINVASPAYLHQHGVPQCPAD 199

Query: 186 -LDKHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L  H  + +       +E + W       T+D P        + VNS  +++   + G 
Sbjct: 200 LLHGHEAVNYASPQNGRVEQWEWEENGLTHTLDIP------GRVTVNSAEALIACALAGL 253

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  +P Y V+       LV+++         +   YP     + +++ F  ++
Sbjct: 254 GMIQIPAYDVRSYLHTGQLVKVLPKWCAAPLPMALLYPHRRHLSMRVQVFAAWL 307


>gi|325168818|ref|YP_004280608.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064541|gb|ADY68230.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 293

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 14/289 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ ++ F  VA  G  T AA +L L +S +SR++  LE+E+G++L  R  RG +LTE G+
Sbjct: 4   FEDMQTFVEVADGGGITVAARRLGLPKSIVSRRLVRLESELGVQLLARTTRGASLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 + +  ++E  + E+  +  +  G+LR+A     G       L E    +P +Q+
Sbjct: 64  SFREHAARMCLEMEVAREEIAPTG-ELRGRLRVAVPSSFGPRHFAPALAELARQHPLLQL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
                ++ +D+  +  DC IR+   +Q S+L  RK+       +A P YL+    P    
Sbjct: 123 HAHYSDRYVDLVAEGFDCGIRVGY-LQDSNLTARKIGAFAAGLFANPEYLRKHGVPRKPS 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I  G          +W ++   R I        + +S L I +    G GIA 
Sbjct: 182 DLLDHQAILQGTE--------SWKVSDGSRTIVINAQGRFKADSALGIAEGTAAGLGIAA 233

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LP  I +       LV IM D   P   VY   P     + K++   +F
Sbjct: 234 LPVVIAESYVAAGTLVPIMSDYGLPEIGVYIVRPPGSHVSRKVRVLIDF 282


>gi|229514589|ref|ZP_04404050.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
 gi|229348569|gb|EEO13527.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
          Length = 295

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 19/281 (6%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I++QLI       +   + D  I R  + + S S     L       YA+P YL     P
Sbjct: 121 IRVQLITTTPG-QLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
            ++QEL +HN++ +G+      + F  + T        R++        +  ++      
Sbjct: 180 QTLQELTEHNVLCWGE------QTFREVKTAQ----GKRLTLTGNFATTNPEALFYAGKA 229

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           G GI +    ++K+     NLVR++ DV     TVY  YP+
Sbjct: 230 GMGIIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPK 270


>gi|206558590|ref|YP_002229350.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198034627|emb|CAR50494.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 307

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 139/294 (47%), Gaps = 14/294 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  + + L +F     +GS + AA +L L +S++S++++ LE  +G +L +R +R   LT
Sbjct: 4   LEVNLNDLYLFVQAVDAGSMSAAARRLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G++          + ++ +  +   + +P+G +RI +++ + Q++L   L    + +P
Sbjct: 64  PVGAEFFEHARAAVIEADSARDAVLRQAAEPAGVVRITSSVPVAQHILAPCLPALAIAHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + +Q+   ++ +DI+ +  D A+R    P+  S+L+QR L    +   AAP YL     
Sbjct: 124 KLLLQIHASDRLVDIAQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPAYLARAGT 183

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H+ +  G   P+          VD     PR+  LQ +    ++Q    G 
Sbjct: 184 PDTPADLAQHDGLHPG---PQPWRLQRGGDAVDV---TPRLR-LQADESTLLLQAATAGL 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A LPD+I      +  LVR++      + T     P      G+L   R  +
Sbjct: 237 GLACLPDWIAGAALASGTLVRVLPGWCAGTVTTTLLMPH---RRGQLPGVRAAV 287


>gi|261346255|ref|ZP_05973899.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
 gi|282565563|gb|EFB71098.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
          Length = 304

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 143/286 (50%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +   GS + AA++L +S++ ++R ++ +E   G++L  R  R L+LT  G  ++
Sbjct: 7   VQVFITIVEQGSLSGAADKLDMSRAMVTRYLAEMEQWAGVRLLNRTTRRLSLTSAGESVY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + + ++     T  ++ + ++   +G +RI+ +  + Q+ L   + EFL LYP++ I + 
Sbjct: 67  QQSLQLNAISLTLPVQQKHNTKDLAGLVRISCSQSIAQSALSLAISEFLQLYPNMMIDMQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + NK +++  +  D AIR+   ++  SLI + L T H    A+P +LKN   P   ++L 
Sbjct: 127 ISNKSVNLIEERIDLAIRITNQLE-PSLIAKPLSTCHSVICASPAFLKNKTLPTQPEDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +T+     + +  F         + + R+S    N  + +M+  + G+GIA+ P Y
Sbjct: 186 LLECLTY-SFFGRSLWSFEKEGKTSTVLVDGRLSA---NESVFLMEAALNGAGIAMQPYY 241

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V     +  L++++ D       +Y  Y         L+A  +F+
Sbjct: 242 SVAKYLQSGELIQLLPDYTPMPLGIYGVYTSRQHMPTPLRAVIDFL 287


>gi|110807105|ref|YP_690625.1| putative DNA-binding transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|110616653|gb|ABF05320.1| quorum sensing Escherichia coli regulator A [Shigella flexneri 5
           str. 8401]
 gi|281602621|gb|ADA75605.1| Quorum sensing regulator A [Shigella flexneri 2002017]
 gi|313648514|gb|EFS12956.1| HTH-type transcriptional activator aaeR [Shigella flexneri 2a str.
           2457T]
 gi|332752406|gb|EGJ82796.1| HTH-type transcriptional activator aaeR [Shigella flexneri 4343-70]
 gi|332765243|gb|EGJ95470.1| quorum sensing transcriptional regulator of LYSR-type [Shigella
           flexneri 2930-71]
 gi|332998364|gb|EGK17963.1| HTH-type transcriptional activator aaeR [Shigella flexneri VA-6]
          Length = 309

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 4/239 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP +   L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSANL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +        E         R I + R      N  ++++++   G+GIA +P
Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 240


>gi|33596478|ref|NP_884121.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33602227|ref|NP_889787.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33566247|emb|CAE37158.1| probable LysR-family transcriptional regulator [Bordetella
           parapertussis]
 gi|33576666|emb|CAE33743.1| probable LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 303

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 124/272 (45%), Gaps = 14/272 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GS + AA  L +S++ +SR ++ LE  VG++L +R  R L+LT  GS+  
Sbjct: 7   MQVFVEVADRGSLSAAAMHLGMSRAMVSRYLAELEAWVGVRLLHRTTRRLSLTPAGSETL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +  +     +P G LR+   +  G   L   + EF+  +P   I L+
Sbjct: 67  PRCRRMLEMVGDMREAVAAPDAEPRGLLRVTAAMSFGGAQLAEAVAEFVRRHPAASIDLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D A+R+   +   +LI R+L        AAP YL+    P   ++L 
Sbjct: 127 LVDRAVNLVEERVDLAVRITNDLD-PNLIGRRLADCRSVVCAAPQYLQQHGAPARAEDLS 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            HN +T   FG    + +  F        P+  P    +  N    +M+  + G+GI +L
Sbjct: 186 LHNCLTHSYFG----RSLWRFE---RAGEPVEVPVGGNITANETDVLMRAALAGAGIVML 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           P Y+         L  ++ D   P   ++  Y
Sbjct: 239 PTYLAAGQIAAGTLRPLLPDCAPPVLGIHGVY 270


>gi|148547184|ref|YP_001267286.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511242|gb|ABQ78102.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 313

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 143/295 (48%), Gaps = 12/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  +GSFT AA++L +S+ S+SR++  LE  +G++L  R  R L  T  G 
Sbjct: 23  YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 82

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++  + ++   +    G LR++  +      L   L EFL L+P + +
Sbjct: 83  HYYQSALRLLGEVQQVEHDISGQAQVLRGTLRLSAPLSFAMAHLGCLLTEFLQLHPQVDV 142

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++ ++     A+P YL+    P    
Sbjct: 143 EVDLSDRAVDLIGEGYDLALRI-GALEDSSLIARRIASVERVYCASPAYLQARGAPGKPD 201

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL  H+ + +G           W           +++  ++ N+   +    + G G+  
Sbjct: 202 ELAAHDCLPYGH-----SRQVQWQFHKGGKTQAIQVTGRMRANNGELLRGAAIAGMGVTY 256

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP +IV        LV ++++   P+  +   YP+  +    ++ F +  FL+AR
Sbjct: 257 LPTFIVGQALAEGQLVTVLDEWRPPALQLSAVYPQHRQVARPVQGFVS--FLRAR 309


>gi|325202883|gb|ADY98337.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M01-240149]
          Length = 303

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 1/181 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L     P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLIRNGVPKTPEEVT 185

Query: 188 K 188
           +
Sbjct: 186 R 186


>gi|187920867|ref|YP_001889899.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719305|gb|ACD20528.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 334

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 123/273 (45%), Gaps = 11/273 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DW  +RVF  +AR G+   AA QL  +Q ++ R++  LE  VG  LF R A G  LT
Sbjct: 48  MTMDWGDVRVFLAIARCGTLGAAARQLGQTQPTMGRRLRALENAVGQMLFQRTAEGFVLT 107

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  +      +  +       L  ++ + +G LR++++   G ++L      FL  +P
Sbjct: 108 DEGQAVLSFAERMEEEALAFTRSLAGTTQQLTGSLRVSSSDWFGIHVLTPVFATFLSRHP 167

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+LI D++   +S   AD   R+  P     +IQRK++ ++   Y     +      
Sbjct: 168 LLSIELITDSRRYSLSRREADLVFRI-TPFDEPDVIQRKIMDMNYALYGHADLVVP---- 222

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +    +LIT  D   + + D  W   + R +   R++    N  +   + C  G G
Sbjct: 223 -QAGDGAGQSLITM-DSAFEALPDVTW---IRRMLPHARVAYASNNRGVQ-ARMCAEGGG 276

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
            A+LP  +  + P L RI      P   V+  Y
Sbjct: 277 FAVLPCALGDNTPGLRRIDLGEKPPGREVWLGY 309


>gi|91224599|ref|ZP_01259860.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91190487|gb|EAS76755.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 300

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 139/295 (47%), Gaps = 18/295 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 5   DDYIIFYHLIEQGSFSAAARHMSLTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  VY  + T +  +       SG ++I+     G+ +L   + EF   YPDI I 
Sbjct: 65  FFTHAKAVYQAVATAEESIVGLGKNLSGHIKISVPTISGELILPQVINEFNQKYPDINID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P   Q 
Sbjct: 125 MDLDNRFVDIVNERFDLAIR-TGVLPDSSLIARKLVDANWIICASPQYLAKHGIPKQPQA 183

Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L KHN + +        E      D  +  TVD          L  N+   +    +LG 
Sbjct: 184 LAKHNCLVYSYQETGAHEWAFKDGDEVYQITVD--------GNLCTNNSSVLRNVALLGQ 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GI  +P  +V ++    +L+++ +D       +Y  YP   +   K+K F + ++
Sbjct: 236 GIIYVPRVLVYEDLKQGSLIQLFKDETAKCLGIYAVYPYTRQQPEKIKIFIDHLY 290


>gi|92112912|ref|YP_572840.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796002|gb|ABE58141.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 301

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 23/298 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  +  SGSFT AA  L + +++ +  I  LE+ +G++L  R  R +  T +G 
Sbjct: 4   FDSMTLFVRIVESGSFTRAANALDIPRATATLAIQRLESRLGVRLLERTTRQVRPTPEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+    +  +LE  +  LQ  +  P G LR+         ++  +L +F   YP +++
Sbjct: 64  AFHQRCLHLLAELEDAEAMLQPIADNPRGVLRVELHGTHASRIVLPHLDDFHARYPLLEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DCA+R  +P + SSL+ R+L T+     A+P YL+    P + +
Sbjct: 124 VITTGDRRVDLVGEGIDCAVRSGEP-EDSSLVARRLATLEQVICASPAYLERMGMPSTPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPI-----GEPR----ISCLQVNSYLSIMQYC 235
            L  H+ + F       +  FN     DR +     GE R       L VN   S +   
Sbjct: 183 SLRHHHGVHF-------ISGFN---APDRTLDVIVDGETRHVTTGGWLTVNDADSYVVSA 232

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G G+  LP + +    +   LV ++     PS  +Y  YP+    + +++ F  +I
Sbjct: 233 LEGFGLIQLPRFRLTPHLETGELVEVLPRWEKPSLPLYAVYPQRRHLSPRVRVFLEWI 290


>gi|307300197|ref|ZP_07579982.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306905086|gb|EFN35669.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 310

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF      GS   AA +L  S +++SR +S LE  VG++L +R  R L L+E G +
Sbjct: 5   DAMKVFVAAIDEGSLAGAARRLKRSPTAVSRALSFLEAHVGVELLHRTTRTLKLSEAGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V   LE   +        P G L I++   LG+ +L+  L +FL LYP + ++
Sbjct: 65  YAAACRRVLTDLEEADMLAGGERSAPRGMLTISSPPILGEEILRPILDDFLDLYPTVSVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQ 184
           L+L ++ +++  +  D A+R+ + +  SSLI  +L   +     A+P YL N        
Sbjct: 125 LLLLDRFVNLVDEGVDIALRIGQ-LADSSLISTRLGGDVRRVVVASPRYLANHPRIGEPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL----ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
           +L KH ++ F +     +E +++     +++ R I   PR  C+ VNS  +       G 
Sbjct: 184 DLAKHQILAFTNF---GLEAWSFTPAKGSSIPRTIQFTPR--CI-VNSVRAAAASAAAGR 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  L  Y V +   +  L  ++ D   P    +   P+   +  K++AF +F
Sbjct: 238 GLTRLYSYHVAEYVRDGRLEIVLADAEHPPLPAHLIAPQGRMSVPKVRAFVDF 290


>gi|260431147|ref|ZP_05785118.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414975|gb|EEX08234.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 304

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 18/295 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R L+ TEQG  
Sbjct: 5   DNIRTFVRVYDLGSMSAAGRDLRISPAVTSARISQLEDHLGVRLFQRTTRNLSPTEQGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   ++  + ++   +  P G L +A  + +G+ L+   + EFL  YP+I ++
Sbjct: 65  FYPGAVAVLDAVDQAEAQVMHLTEAPRGTLFVAAPLGVGRRLIAPQVPEFLDKYPEIDVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A  +  P + S+L  RK+        AAP Y+     P S  +
Sbjct: 125 LRLTDRSVDLTTEGLDLAFFIGLP-EDSTLRIRKIADCQRILCAAPDYVARRGMPRSGAD 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           L  D+H  +      P   E F WL  +  P G  R +     + +    +  + + G G
Sbjct: 184 LIADRHECLNL--RYPGATE-FQWL--LQTPDGPKRFAVSGRFECDDGDVLTDWALAGQG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFC--YPEALKNTGKLKAFRNFI 290
           IA+ P + V ++     LV + +D  TP   V     Y        K + F +F+
Sbjct: 239 IAMKPVFEVAEHLKAGRLVPVAQD--TPPVPVQMACLYTHRRHQDPKARLFMDFV 291


>gi|71282301|ref|YP_267739.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71148041|gb|AAZ28514.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 299

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 141/293 (48%), Gaps = 16/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  V  +GS +  +    +  SSISRQ++ LE E+G++L  +  R   LTE G K
Sbjct: 5   NRLLYFNSVVETGSISQTSRIFDVQPSSISRQLAVLEQELGVRLLNKTTRNTGLTEAGHK 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  +  +  + +  +  + +    P GKL I+ T+  G++++   + +F+ LYP+I I 
Sbjct: 65  YYEYSQRIVSEFDEAKRVVNDLQEVPKGKLNISMTVGFGESVVLPLISKFISLYPNIVID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  + +D+  +  D AIR  + +  S++I R+L   +    A+P YL N   P + ++
Sbjct: 125 LELTERVVDLVEENIDVAIRSGR-LPDSTMIARQLTLNNFLLCASPQYLINHSIPHAPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I +     K     +W    +        + + VNS     Q  +  +G+AL+P
Sbjct: 184 LKDHQCIRYNYSRWK-----DWFLMAEEKTKLSLNNTISVNSVNGQKQLVLNDAGLALIP 238

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + V+   ++ +L+++M     P +T  F   E L  T  +   R  I  K R
Sbjct: 239 LWAVRSELEDGSLIQVM-----PEYT--FSPYEELSATYAIYLKRELISPKTR 284


>gi|212636254|ref|YP_002312779.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212557738|gb|ACJ30192.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 300

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 138/287 (48%), Gaps = 19/287 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L++F  V + GSF+ A+ ++    S+ISR+IS LE+++  +L  R  R L LT+ 
Sbjct: 1   MDLNSLQLFVHVVQQGSFSAASRKVRTPVSTISRRISELESQLDQRLLERSTRSLDLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIA--TTIDLGQNLLQGNLKEFLLLYP 120
           G  L+   S  + ++   +I +QES    SG LRI+    +D  + L+     EF   YP
Sbjct: 61  GKTLYLFASRGFEEISAGKIAMQESQDNLSGTLRISIPPNVDAWEPLID----EFYQRYP 116

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q+++I   + ID   D  D  +R+ + ++    + RKL +      A+P +++    P
Sbjct: 117 KVQLEIICTTRRIDFVEDGIDVVLRVGE-LKHQLAVARKLGSYRHVLVASPEFIQRHSIP 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +  L  F   + +   D+ W     R    P+ +C   N Y  I+     G+ 
Sbjct: 176 KTPDDLTELPLAVF---VNRLGNDY-WQLGDSRTAINPQFAC---NDYAPILAMVRKGNM 228

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP--EALKNTGK 282
           +  LP  +V     +  LV ++ D   P+F ++  YP  + L N  K
Sbjct: 229 LGELPPTMVNKLIKSGELVELLTDYPLPAFDLHLLYPSRKYLSNIAK 275


>gi|92114917|ref|YP_574845.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91798007|gb|ABE60146.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 291

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 136/302 (45%), Gaps = 29/302 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD L +   V  +G FT AAE+L  S + +SR +S LE ++   L  R  R L +T
Sbjct: 1   MKSRWDDLALLLAVVDAGGFTAAAERLGTSTARLSRAVSRLERQLDTTLVQRTTRRLDVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       +    LE  +  L     +P+G+LR+        + +  +L  F   YP
Sbjct: 61  EEGASFIAQARQALDTLEAAEEALTVRRREPAGRLRVDAATPFLLHQIVPHLAAFHAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L     +ID+     D AIR+ + ++ SSL  R L        A+P YL     P
Sbjct: 121 KVRLELTTHETNIDLIEQRTDIAIRIGR-LEDSSLHARPLGHSRRRLVASPDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLG 238
            + + L  H L+ F  L P+      W      P+  G      L  +S  ++++    G
Sbjct: 180 ATAEALSAHVLLGFTHL-PQLN---RW------PLRGGCSVTPTLASSSGEALLRMAEAG 229

Query: 239 SGIALLPDYIVKDNPNLVR---IMEDVI----TPSFTVYFCYPEALKNT---GKLKAFRN 288
            GIA L D++ +D     R   ++ED +     P   VY+      +NT   G++ AF +
Sbjct: 230 LGIACLADFLTRDACQAGRLSFVLEDAMLERYEPIQAVYY------RNTALEGRIAAFLD 283

Query: 289 FI 290
           F+
Sbjct: 284 FL 285


>gi|315182143|gb|ADT89056.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 298

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 116/243 (47%), Gaps = 7/243 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   G+F  AAE+L LS   +S+ ++ LE  + ++L  R  R + LTE G    
Sbjct: 7   MRAFTTVVSEGNFVKAAERLDLSPQLVSKYVAQLEDALKVRLLNRTTRRVNLTEAGQAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   ++  +  L     + SG LR++  +  G + L   +  F   YPD++++L+
Sbjct: 67  ERCQQVLQDIDDMENALSNLQSQVSGTLRVSAPMSFGVHHLSKPVALFQDRYPDVKVELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A+R+   ++ S+L+ +K+  IH+   AAPHY +    P   + L 
Sbjct: 127 LTDRKVDLLDEGVDIALRIGH-LKDSALVAKKITPIHLSICAAPHYWQQHGRPTQFEALS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           + N + F    P+      W     + +     S     N+   I+   +LG G A+ P 
Sbjct: 186 QLNYLRFTYSDPRA-----WFRDWPKHVSIHDFSSDFSSNNGDVIVNAALLGRGYAIQPT 240

Query: 247 YIV 249
           ++ 
Sbjct: 241 FLT 243


>gi|262373863|ref|ZP_06067141.1| transcriptional regulator [Acinetobacter junii SH205]
 gi|262311616|gb|EEY92702.1| transcriptional regulator [Acinetobacter junii SH205]
          Length = 300

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 146/296 (49%), Gaps = 14/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE+L  + S +SR +S LE+++ + L  R  R L LT
Sbjct: 1   MKSSIEELLAFITIVDTGSFIAAAERLGQTASGLSRSLSRLESKLEVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ + L   +  LQ S    SG +R+ +      +++   ++ F   YP
Sbjct: 61  QEGQQFLAHARKILNDLSAAEEALQRSDQDTSGLIRVDSAAPFILHVIAPLMRVFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+I+L  +++ ID+     D A R  + +  SSL  + +    ++  A+PHYLK    P
Sbjct: 121 NIEIELNSNDQVIDLLEHKTDVAFRFGE-LHDSSLHAKLVCKSRLYIVASPHYLKRMGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLG 238
              ++L +H+LI F     + +    W   VD      + +I   + +S  ++ Q C+ G
Sbjct: 180 TQAKQLLQHDLIGF----TRPIHINQWPIKVDDEYFFAQAKI---KASSGETVRQLCLRG 232

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
            GIA L ++ +  + N   LV + ED I  S+ +++  Y +      +++ F  F+
Sbjct: 233 QGIARLSEFEIWQDLNEGRLVALFEDQIEHSYQSIHAVYYQQEHLAKRVRLFIEFL 288


>gi|299770124|ref|YP_003732150.1| transcriptional regulator, LysR family protein [Acinetobacter sp.
           DR1]
 gi|298700212|gb|ADI90777.1| transcriptional regulator, LysR family protein [Acinetobacter sp.
           DR1]
          Length = 297

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 136/290 (46%), Gaps = 16/290 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  +   GSF  AAE L+ S +  S+ IS LE E+G++L  R  R L  TE G   +  
Sbjct: 1   MFISIIEQGSFVKAAENLNTSVAQASKLISKLENELGVQLLKRSTRSLKPTELGLAYYHR 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++  + +  +I ++  S  P GKL+I+     G   L   L  F   Y  I++ +   
Sbjct: 61  IKQLMAEFDEIEISIKNQSRAPVGKLKISAPNSFGTVQLSKTLVNFAQKYSQIELDVSFT 120

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +++  +  D AIR+ + ++ ++LI   L  I     A+P YL+    P S+Q+L+ H
Sbjct: 121 DRTVNVIEEGFDIAIRIGE-LKDNNLIATPLSQIRFVLVASPLYLEKFDCPQSLQDLETH 179

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGIAL 243
           + I   +      + + W      P     +  + VN  +      + +   + G GIA 
Sbjct: 180 SCIIDTNF----KDPYEWAFFEKSPSN--VLHTINVNGRIHFANTEACLAATIAGLGIAR 233

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +I+KD   +  ++ I+E+   P   +Y  YP A     K++   +++
Sbjct: 234 LPMFILKDALIDKKIIPILENYELPRRGLYAVYPPAKHLANKVRTLIDYL 283


>gi|296115560|ref|ZP_06834187.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977809|gb|EFG84560.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 297

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 124/288 (43%), Gaps = 17/288 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   SFT AA +L  SQS++S  I  LET + ++L  R  R ++ TE G +L 
Sbjct: 9   LNAFMTVAEEQSFTRAAAKLGTSQSTLSHTIRRLETRLNVRLLTRTTRRVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    + +    L E S KPSG +RI T+      LL   L + L  YPD+ ++L 
Sbjct: 69  TALVPALDMISSEIASLSELSEKPSGTVRITTSEHAANTLLWPALSKLLPKYPDLHVELA 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+   DI  +  D  +RL + I    +       + M    AP Y +    P   Q+L 
Sbjct: 129 VDSSLTDIVAERFDAGVRLEETIARDMIAVPIGPPLRMAVVGAPSYFERHPVPRKPQDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            H  I     +P     + W     +     R+   L  N+   I Q  + G G+A    
Sbjct: 189 HHTCINL--RLPTSGGVYAWELEKGKRALRVRVDGQLTFNNVPMIRQAALGGFGLAC--- 243

Query: 247 YIVKD-------NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            I++D       +  LVR++ED   P    +  YP   +++    AFR
Sbjct: 244 -IMEDQSAPYLADGRLVRVLEDWCPPFPGYHLYYPSRRQSSA---AFR 287


>gi|222106901|ref|YP_002547692.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221738080|gb|ACM38976.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 312

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 11/291 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  WD LR+   +A++     AA  L +  S++ R++  LE  +G+ LF R   G  LT 
Sbjct: 6   SLAWDDLRLVKAIAQALGMAGAAATLGIDHSTVFRRLGALEEALGVPLFERRRSGYALTP 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  R    +  ++   +  LQ   + P+G++R+ T   L   LL      F   YPD
Sbjct: 66  TGEEAVRTAERIEAEVAQLERRLQGREIAPAGEIRVTTADSLLVYLLTPLFARFQQAYPD 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +++ N  +++S   AD AIR         L+ R++  I    Y           P 
Sbjct: 126 IQLDVVIGNNALNLSRRDADIAIRATDN-PPDMLVGRRIGLIAWALYGRGQDFAAASAP- 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGS 239
              EL+  +    G       ED   L  V     +  P+    + NS L++      G 
Sbjct: 184 KPAELNAAHWACLG-------EDMAGLKVVKAAKQQLAPKQLRYRANSVLALADAVEAGI 236

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P +I    P LVR+   +   S +++    + L+++ +++ F +FI
Sbjct: 237 GIGHIPCFIGDVRPALVRLSPTIPDYSASLWLLTHQDLRHSPRIRVFMDFI 287


>gi|218694903|ref|YP_002402570.1| putative nucleic acid-binding regulator [Escherichia coli 55989]
 gi|218351635|emb|CAU97350.1| putative nucleic acid-binding regulator [Escherichia coli 55989]
          Length = 299

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 128/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D   P    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFPPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|15595321|ref|NP_248813.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107099115|ref|ZP_01363033.1| hypothetical protein PaerPA_01000124 [Pseudomonas aeruginosa PACS2]
 gi|116053844|ref|YP_788281.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254237635|ref|ZP_04930958.1| hypothetical protein PACG_03720 [Pseudomonas aeruginosa C3719]
 gi|254243231|ref|ZP_04936553.1| hypothetical protein PA2G_04035 [Pseudomonas aeruginosa 2192]
 gi|296386610|ref|ZP_06876109.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313112312|ref|ZP_07798079.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9945951|gb|AAG03513.1|AE004450_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115589065|gb|ABJ15080.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169566|gb|EAZ55077.1| hypothetical protein PACG_03720 [Pseudomonas aeruginosa C3719]
 gi|126196609|gb|EAZ60672.1| hypothetical protein PA2G_04035 [Pseudomonas aeruginosa 2192]
 gi|310884581|gb|EFQ43175.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 302

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 26/290 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GS   AA+ L ++ S++S+QI  LE+   + L +R  R LTLTE G   +
Sbjct: 7   MAIFATVVDKGSMAAAAQSLGMTPSAVSQQIRKLESRAQVTLLHRTTRRLTLTEAGEAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +++    E  +  L E    P G+LR+A  +     L+   LK  L  +  +++QL 
Sbjct: 67  RSCAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGFSGTLITQALKPLLENHRQLRLQLF 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184
             ++ ID+  +  D AIR+   +  SSL+ R L        AAP YL+       P  + 
Sbjct: 127 FQDERIDLVAERIDLAIRVGN-LADSSLVARHLGDWSSVLCAAPAYLRQRAPINRPEQLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVL 237
           E+D  +L T   L        N L T+  P G       EPR++    N  L++ Q+ + 
Sbjct: 186 EVDWISLNTSNHL--------NHL-TLSGPGGEVCKLRLEPRVAA---NGMLAVRQFTLD 233

Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G G++  P   V+D  N   L +++ +   P   +Y   P       K+K
Sbjct: 234 GLGVSYQPLPEVRDALNDGRLQQLLPEWRIPGLGIYAVTPRREAQPAKVK 283


>gi|226946235|ref|YP_002801308.1| LysR family regulatory protein [Azotobacter vinelandii DJ]
 gi|226721162|gb|ACO80333.1| Bacterial regulatory protein, LysR family [Azotobacter vinelandii
           DJ]
          Length = 295

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 139/294 (47%), Gaps = 15/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +++F  +   GSF+ AAEQ  +S++S +  I  LE+ +G++L  R  R +++T  G 
Sbjct: 4   FQAMQLFARIVELGSFSKAAEQQGMSRASATALIKQLESRLGVRLLQRTTRQVSVTLDGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    V  ++E  +  L +++  P G+L++     LG+ ++   L +F   YP+I +
Sbjct: 64  SYYQHCRSVLGEIEEVESVLSQNARHPRGRLKVDLPASLGRLVVIPALPDFQARYPEIVL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ ID+  +  DC +R+   +  S+LI R L  +     A+  YL     P S+ 
Sbjct: 124 EIGIGDRMIDLVREGVDCVVRIGG-LSDSTLIARSLPALPQVTCASAGYLARHGLPTSLD 182

Query: 185 ELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           EL  H  I     T G L P        + T   P      + L VN   + +  C  G 
Sbjct: 183 ELQGHRCIDYLSATTGRLAPLEFAVDGRIETRSLP------ASLAVNHGEAYVAACEAGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P Y V+      +LV ++     P+  +   YP     T +L+ F +++
Sbjct: 237 GIVQVPRYHVERQLAAGSLVELLPQHPPPALPMTVLYPHHRHLTPRLRVFIDWL 290


>gi|325517999|gb|EGC97815.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 305

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 15/273 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F     +GSF  AA +L  ++S++ + I  LE  +G +LF R  R L LT+ G   +  
Sbjct: 14  AFVAAVDAGSFAQAAARLGQTRSAVGKAIGRLEARLGTRLFVRTTRRLALTDDGQAFYER 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            ++   +L+  Q  L+    + +G+LR++  +  G++ L   L +    +P +Q++    
Sbjct: 74  CAQALEELDAAQHMLEAGRREAAGRLRVSAPVVFGRHHLTPLLLDLADRHPRLQVEGHFT 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D + +  D AIR      S +L+ R L    M   A+P YL+    P S  EL  H
Sbjct: 134 DRVVDFADEGVDLAIRSGALPDSDTLVARPLGMQAMVVCASPAYLRAHAAPRSTAELGAH 193

Query: 190 NLITF---GDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
             I +   G   P       W L   D  + +P +   L  +   S++   + G+G+  +
Sbjct: 194 RCIVYLHGGRANP-------WTLTEPDGRVVQPALPYRLGFDDIDSLVAAAMRGAGLVHV 246

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           P+++V+D      LVR+M+ + +    ++  +P
Sbjct: 247 PEWLVRDALRTGALVRVMDHMASAGTPMHVVWP 279


>gi|322833079|ref|YP_004213106.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321168280|gb|ADW73979.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 298

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F  V ++GSFT AAEQL LS+  +SR+++ LE  +  +L  R+ R L++TE G  
Sbjct: 4   EDLRIFIAVVKAGSFTTAAEQLMLSKQYVSRRMASLEAGLHARLLNRNTRKLSVTESGQL 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    +   +E  +  +        G  RI+  +  G + L   + EFL  +P IQ Q
Sbjct: 64  FAQHAQRILDDIEEAERAVSPRRQALQGTYRISIPMSFGISHLSPLIAEFLGQHPAIQFQ 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D A+R+   +  SSL+ R+L  +      +P YL+    P   ++
Sbjct: 124 VELVDRYVDLVGEGFDIALRIGN-LADSSLVARRLGELKRVICCSPEYLQRKGTPEMPED 182

Query: 186 LDKHNLITFGDLIPKC----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H+ + +G          +E    L  V  PI    +S    N+   +    V G G+
Sbjct: 183 LLNHHCLRYGREGQTGWELELEGKRRLFDVRGPI----VS----NNGEVLRDAAVAGLGL 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LLP++IV        LVR+++     + +++  YP+  + +   + F +F+
Sbjct: 235 VLLPEFIVGPALQYGALVRVLDAFHPGALSLHAIYPQHRQRSEVTRVFLDFL 286


>gi|293608457|ref|ZP_06690760.1| transcriptional regulator [Acinetobacter sp. SH024]
 gi|292829030|gb|EFF87392.1| transcriptional regulator [Acinetobacter sp. SH024]
          Length = 313

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 129/293 (44%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+   
Sbjct: 13  MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ ++  
Sbjct: 73  ERCRQVISMVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+     D ++ L + +  S  + R++ TI     A+P YL+    P S ++L 
Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGMPKSPEDLK 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P    D++ L T            L  ++   ++       GIALLP +
Sbjct: 193 DHACLRLVN--PSITPDWHLLNTSGESYQIDIGGQLIADNPELLLDVVQQDMGIALLPMF 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              D   N  L  I+ +  +P   VY   P            R+FI  K R W
Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292


>gi|293605288|ref|ZP_06687674.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292816344|gb|EFF75439.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 324

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 148/309 (47%), Gaps = 21/309 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + + +   V  +GSF+ AA Q  +  +++SR+++ LE  +G++L +R  R L+LT
Sbjct: 24  MSDRLEAMALLLAVVEAGSFSQAARQAKMPLATVSRKVADLEAHLGVRLLHRSTRQLSLT 83

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G        ++   +   +       V+P G+L +   I  G+  L   + EFL  YP
Sbjct: 84  EAGQAYVAACRQILDAVGEAERAATGEYVEPKGELVMTAPIVFGRLHLLPVIAEFLKTYP 143

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++++L ++ + +  ++ D A+R+   +  SSL+   + ++     A+P YL     P
Sbjct: 144 DIDVRMVLTDRVVPLLEEHIDLAVRIAD-LPDSSLVAIPVGSVRRVVCASPAYLARHGTP 202

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  ++L  H  +TF  +  + + +F    +    I  P  S L V++  + +   V G G
Sbjct: 203 LHPRDLSHHACVTFEKMASRQVWNFQ---SGKSSIAIPVRSRLAVSTAEAAVDAAVAGIG 259

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTG------KLKAFRNFIF 291
           +  +  Y +        L  ++ D   PS      +P +L +TG      K++AF +F  
Sbjct: 260 LTRVISYQMASALQAGELDIVLADFEPPS------WPISLVHTGQGALPLKVRAFLDFAA 313

Query: 292 --LKARDWK 298
             LKAR ++
Sbjct: 314 PRLKARSYE 322


>gi|289625131|ref|ZP_06458085.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648700|ref|ZP_06480043.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868002|gb|EGH02711.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 305

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 135/292 (46%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMIVIPALPEFARRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL++ 
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLQRYGTPLNLP 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L +H +I +            ++A    VDR +       + VNS    +  C  G G+
Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMADGVEVDRALA----CSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V        LV ++     P   +   YP   + + +++ F +++
Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290


>gi|260574141|ref|ZP_05842146.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
 gi|259023607|gb|EEW26898.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
          Length = 302

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 128/291 (43%), Gaps = 12/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  +R F  VA +GS + AA  L  SQ S+ R I  +ET + + LF R  RGL LTE 
Sbjct: 11  LDWSLIRSFLAVAETGSLSAAARALGQSQPSLGRHIRQVETALEVALFTRQPRGLALTEA 70

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     E+        +     S + +G +RI  +  +  ++L   L       P I
Sbjct: 71  GQALLPAAQEMRAAAARLALTAAAKSDRLAGSVRITASRIMSHHILPPILSALRQAEPGI 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI L+  +   ++    AD A+R+ +P Q + +I R L  + M  YAA  YL     P +
Sbjct: 131 QIDLVPSDTSENLLFREADIALRMYRPTQ-ADIITRHLADLPMAVYAARSYLDRRGRPQN 189

Query: 183 IQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             EL   + + +   D+I + M       T D          L+ +  L        G G
Sbjct: 190 RAELLALDFVGYDRSDMILRMMAGLGVPVTRD-------FFGLRCDDQLVYWNLVRAGGG 242

Query: 241 IALLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +   I   +P LV  ++ ++T P+  ++     AL++  +L+   +F+
Sbjct: 243 IGGMQRNIGDADP-LVEPLDGIVTLPALPLWLAAAPALRSAPRLRRVWDFL 292


>gi|148555991|ref|YP_001263573.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148501181|gb|ABQ69435.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 320

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 127/286 (44%), Gaps = 14/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  V  +G+F+H  ++L +  S++S+ IS LE  +G +LF R  + L +TE G +L+
Sbjct: 25  LRVFVAVVETGNFSHTGQRLRVVPSTVSKHISALEKRLGGQLFVRSTQKLGVTELGLRLY 84

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +I++ E + +P G L+IA      Q  L   L  FL   P + + + 
Sbjct: 85  DHALAILQDVEAAEIDISEYNSEPQGILKIAAGTVFAQRHLAPILIRFLEANPKVSLDVS 144

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L      +  D  D AIR+   +    +  +    I ++  AAP YL     P    +L 
Sbjct: 145 LSTTSNHLISDGIDVAIRISDALDPGLIAVKLAPNIRLYC-AAPAYLAREGTPARASDLA 203

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGIAL 243
           +HN +    ++    +   W   +    G      +  N        ++Q  V G GI  
Sbjct: 204 RHNCL----VVRGVAQSAQW--PIKGETGATEFIAVSGNFVADNVDLLLQAVVAGVGIGH 257

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP ++V D   + +LV I  D    +  +Y  +PE      K +AF
Sbjct: 258 LPLFMVYDLLASGDLVEIFPDSRAVASHIYAVFPERRNMPLKTRAF 303


>gi|119945399|ref|YP_943079.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
 gi|119864003|gb|ABM03480.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
          Length = 300

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 133/274 (48%), Gaps = 8/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D ++L +F +V  +GSF  AA    +S  ++S++IS LE E+ ++L YR  R L+L+E G
Sbjct: 3   DVNELFLFVLVVEAGSFNKAASIAGISTPALSKKISKLEKELSVQLLYRTTRKLSLSEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L++    +  ++      +   S K SG+++++     G+ LL   + EF   +PDI 
Sbjct: 63  ETLYKHAKNINQQVNEAIGAVSNFSDKISGEIKLSVPTISGELLLAEIVAEFCQQHPDIS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L+N+  D+  +  D AIR    +++S+LI + L+  H     +P Y++    P  I
Sbjct: 123 VNIRLENEFADLVTEGLDLAIRTGN-LENSTLIAKPLIVSHWIVCCSPDYIEQHGMPKKI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
             L  HN + +     +     +W    +      RIS     N+  ++ +  + G GIA
Sbjct: 182 DALLTHNCLAY---TGQAKGSHDWRFEQNGQEQSIRISGNFATNNAQALRKAALAGYGIA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P   V +   N  L+ ++ D    S  VY  Y
Sbjct: 239 YVPRCGVYEDLQNGKLIALLTDYKPRSLGVYAVY 272


>gi|254225854|ref|ZP_04919457.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125621581|gb|EAZ49912.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 295

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 19/281 (6%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I++QLI       +   + D  I R  + + S S     L       YA+P YL     P
Sbjct: 121 IRVQLITTTPG-QLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
            ++QEL +HN++ +G+      + F  + T        R++        +  ++      
Sbjct: 180 QTLQELTEHNVLCWGE------QTFREVKTAQ----GKRLTLTGNFATTNPEALFYAGKA 229

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           G GI +    ++K+     NLVR++ DV     TVY  YP+
Sbjct: 230 GMGIIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPK 270


>gi|312602525|ref|YP_004022370.1| LysR family transcriptional regulator [Burkholderia rhizoxinica HKI
           454]
 gi|312169839|emb|CBW76851.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 322

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 137/296 (46%), Gaps = 22/296 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RVF  VA +GSF  AAE+L++S +  S+ I+ LE E+ ++L  R  R ++LTE GS
Sbjct: 23  FTSIRVFREVAEAGSFVKAAERLNISTAMTSKHIASLERELHVRLLNRTTRQMSLTEAGS 82

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E    L+  +  L   + +P G L+++             +  +   +P + I
Sbjct: 83  VYYEQCCEALDILQAAEAALGAQNSQPQGVLKVSAPGWFATRRFADLVAAYQHRFPHVLI 142

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+N+ +D++ +  D  +R      S SLI R L  +      AP YL   R P    
Sbjct: 143 DLRLENRFVDLTQEGYDMVLRATSE-PSPSLIVRPLCEVPFLLVGAPDYLARHRMPREPL 201

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-------ISCLQVNSYLSIMQYCVL 237
           +++ H ++         + ++  L  V+  +  PR        + L+ N     +Q    
Sbjct: 202 DIEAHRIV---------LPNYTNLDRVE--LSGPRGRFTVRNRAVLKTNDTSMALQCVKA 250

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+A LP++IV     +  L++++ D +  S  VY  Y      T K++ F +F+
Sbjct: 251 GLGLAYLPEWIVTTEVRDGALLKLLPDYVLFSPRVYVVYTSRKYMTPKVRTFIDFL 306


>gi|254419504|ref|ZP_05033228.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
 gi|196185681|gb|EDX80657.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
          Length = 298

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 18/263 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V +SGSF+ A   L L+ S++SR I  +E  +G++L  R  R LTLT +G   
Sbjct: 11  EMEIFVAVTKSGSFSAAGRVLGLTPSAVSRTIDRIEARLGVRLMLRTTRVLTLTAEGQTY 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L+  +  + +    P G++R++ ++  G+  +   L +F+  YP I I +
Sbjct: 71  LGAARRILADLDDAEQGIADQGA-PRGRVRVSASLAHGRQHVVPLLGDFVRRYPHILIDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D++   AD AIR   P+  S L  R+L        A+P YL     P   ++L
Sbjct: 130 NLTDVVVDVAAGQADVAIRF-GPLADSPLTARRLGDTGRTIVASPDYLARRGTPTVPEDL 188

Query: 187 DKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             H+ + F       + P   +  ++  TV  PI        + N+  ++ Q  V G G+
Sbjct: 189 HDHDCLNFNFRRAEPVWPFRRDGRDYALTVRGPI--------EANNGETLTQLAVAGVGV 240

Query: 242 ALLPDYIVK---DNPNLVRIMED 261
             + ++ V    D   LV ++ED
Sbjct: 241 TRVGNFSVADAIDAGRLVPLLED 263


>gi|323495945|ref|ZP_08101011.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323318980|gb|EGA71925.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 295

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 138/295 (46%), Gaps = 17/295 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +++ + S+IS+++  LE  +G++L  R  R +T TE
Sbjct: 1   MDWIQSVHSYIRVVDEGSFNGAARKMNTTSSAISKRVHWLEERIGVQLLKRTTRTVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  S  P+G L+I  T+ +G   L   L +FL +YPD
Sbjct: 61  AGALFYERAKMQLEDWQSIVDETRSVSQSPAGLLKIGATLAVGSKFLVQYLNDFLQMYPD 120

Query: 122 IQIQLILDNKD--IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           I+IQLI        ++S+D      R  + + S S     L       YA+P YL+   E
Sbjct: 121 IRIQLITTTPGQLPELSLDL--FISRELEQLNSLSFKATPLFEHRAGFYASPQYLQQHGE 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +++EL +HN + +G+   + +     L+   R +    +S     +    M Y    S
Sbjct: 179 PKTVEELTQHNALIWGERPQREIT----LSKSKRIM----LSGNFATTNPEAMFYAAKNS 230

Query: 240 -GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI +  D ++KD  N   L RI+ ++     TVY  YP+      + K F +++
Sbjct: 231 MGILVTNDVMIKDELNTGTLKRILPEITADEATVYAYYPKLDYQHTRTKLFLDYL 285


>gi|299771994|ref|YP_003734020.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
 gi|298702082|gb|ADI92647.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
          Length = 293

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 140/310 (45%), Gaps = 34/310 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L  F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLHFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60

Query: 61  EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            +G  L  RV      ++E   +++++      G++RI T    G   L   L EF + Y
Sbjct: 61  LEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 115

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL     
Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVVSIDRPTSGPYIITR-LSDYCLKIYGSQNYLAQNPP 174

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228
              +++L +H  + +                +D  +  P + CL+            +S 
Sbjct: 175 IRGLEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 218

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           L+       G+G+A+LP ++  D P L  ++E  +  + T +      L++  ++K   +
Sbjct: 219 LAQQIAVSAGAGLAILPKFLADDKPELDVVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 278

Query: 289 FIFLKARDWK 298
           ++  +A  ++
Sbjct: 279 YLRKQADKYQ 288


>gi|126666857|ref|ZP_01737833.1| transcriptional regulator, LysR family protein [Marinobacter sp.
           ELB17]
 gi|126628573|gb|EAZ99194.1| transcriptional regulator, LysR family protein [Marinobacter sp.
           ELB17]
          Length = 299

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 139/295 (47%), Gaps = 10/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR    +A  G+   A E L + Q+++ R++  +E  + ++LF R   GL LT  
Sbjct: 1   MDWDYLRYVRALAIGGTLAKAGEILGVHQTTVLRRLDHMEEALAVRLFERSREGLKLTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        ++  ++E  + +L++ +    GK+RIAT   L   LL   L   L+ YPDI
Sbjct: 61  GEMAFHEAEKLAAEIENLERKLRQETTALEGKIRIATPDTLMAELLAPILASLLIKYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++++ DN   ++S   AD  +R     Q++   +R +  +    YA P Y +  R    
Sbjct: 121 ELEVLTDNDVSNLSHREADLTLRPENKPQATWEGER-IAAMEYAVYATPGYCRRNRGFDI 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            Q  ++   I     IP   E F+ LAT    R   +   S ++ NS  +++     G+G
Sbjct: 180 DQRPEQLRWI-----IPD--ETFSLLATGRWYRRHLKHVTSVIRCNSLQAMVALARSGAG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A+LP Y+ +D   L R+ E +   S  ++    +  +   +++    F+  + R
Sbjct: 233 VAVLPCYLGEDARELRRLSEPLEGESVDLWLHVNQDTQQMARVRLVMAFLVSRLR 287


>gi|307546330|ref|YP_003898809.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218354|emb|CBV43624.1| transcriptional regulator [Halomonas elongata DSM 2581]
          Length = 324

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 130/296 (43%), Gaps = 11/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +   +F  V   GSFT A+  L + ++++SR+I  LE  +G +L  R  R L+LT
Sbjct: 2   MQQDLNDALIFARVVEQGSFTAASRLLSIPKTTVSRKIQALELRLGARLLNRTTRRLSLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  +L   +  +Q     P G LR+     +  +     +++F  LYP
Sbjct: 62  EAGGVYYDYCHRIVEELGEAESAVQRLEGNPRGWLRVTAPFTMCTDFTSALMRDFRTLYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L+L N+ +D+     D A+R+  P+  SSL+ R L       YA+  Y+    EP
Sbjct: 122 EVKIDLVLSNERLDLVAQQIDVALRI-GPLPDSSLVARPLARYRSFIYASSRYIARHGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVL 237
               +L  H   T      +  + F W   + + I +  I    V   N    +    + 
Sbjct: 181 REPADLAYHP--TLARSTDQRGQRFFW--QLHKGIQQQEIELDPVAVANDPFVLRGLLLD 236

Query: 238 GSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ L  + +    P    L RI+ +   P       +P     + K++ F +F+
Sbjct: 237 GSGLMLASEAVACLGPEEHQLRRILPEWEGPEVEFNAVFPGGRLISPKVRTFVDFV 292


>gi|296160780|ref|ZP_06843594.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295889083|gb|EFG68887.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 324

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 132/299 (44%), Gaps = 26/299 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFVRVVEAGSFTGAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTTAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   + T + E   +  +PSG LR+ +   +GQ+ +   +  +  LYP++ ++L
Sbjct: 66  LKRCQQILADVSTAEEEASCAHERPSGALRMHSFASIGQHYVLPAISRYRALYPEVTVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    AD A+     + +S L+   L T      A+P Y++    P    +L
Sbjct: 126 TLSQRMPDLFEGSADVAVIGASTLPNSDLVSLPLGTTFSILCASPAYVRAHGAPQKPADL 185

Query: 187 DKHN-LITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H  LI      P     +E  N   T++  +  P    + VN   S++     G GI 
Sbjct: 186 AHHECLILHTPAFPPHDWVLEGPNGCETME--VNGP----VHVNIAESLIVAIREGMGIG 239

Query: 243 LLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y     ++D   LVR++         +Y  YP            R FI  K R W
Sbjct: 240 MLPLYAAISGLRDG-TLVRVLPQYTAQKMNIYALYPS-----------RKFIDAKTRTW 286


>gi|218888868|ref|YP_002437732.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218769091|emb|CAW24851.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 302

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 26/290 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GS   AA+ L ++ S++S+QI  LE+   + L +R  R LTLTE G   +
Sbjct: 7   MAIFATVVGKGSMAAAAQSLGMTPSAVSQQIRKLESRAQVTLLHRTTRRLTLTEAGEAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +++    E  +  L E    P G+LR+A  +     L+   LK  L  +  +++QL 
Sbjct: 67  RSCAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGFSGTLITQALKPLLENHRQLRLQLF 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184
             ++ ID+  +  D AIR+   +  SSL+ R L        AAP YL+       P  + 
Sbjct: 127 FQDERIDLVAERIDLAIRVGN-LADSSLVARHLGDWSSVLCAAPAYLRQRAPINRPEQLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVL 237
           E+D  +L T   L        N L T+  P G       EPR++    N  L++ Q+ + 
Sbjct: 186 EVDWISLNTSNHL--------NHL-TLSGPGGEVCKLRLEPRVAA---NGMLAVRQFTLD 233

Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G G++  P   V+D  N   L +++ +   P   +Y   P       K+K
Sbjct: 234 GLGVSYQPLPEVRDALNDGRLQQLLPEWRIPGLGIYAVTPRREAQPAKVK 283


>gi|152986420|ref|YP_001347980.1| putative HTH-type transcriptional regulator YafC [Pseudomonas
           aeruginosa PA7]
 gi|150961578|gb|ABR83603.1| putative HTH-type transcriptional regulator YafC [Pseudomonas
           aeruginosa PA7]
          Length = 314

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 131/290 (45%), Gaps = 12/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSFT AAE+L + ++ +S++IS LE  +G +L  R  R L LTE G   +
Sbjct: 7   MATFGAVVEAGSFTRAAERLSIPKARVSQRISDLERHLGARLLQRTTRSLNLTEDGRAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +++  +  L+   ++P G LRI     + + +L   L EF   YP + + L 
Sbjct: 67  SKCASILQQVDELEATLRGGLIEPRGSLRIEALASVARWVLAPRLHEFQHRYPQLTLTLC 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++   +  +  DCAIR    +  SSL+ R    + +  YAAP YL++       +EL 
Sbjct: 127 ASDRVSHLLEEGIDCAIR-GGTLPDSSLVARHACDVRLGLYAAPGYLEDTGRARHPRELR 185

Query: 188 KHNLITF--GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +H  +++  G   P     F W L + D          L+ +     +  C+ GSGI   
Sbjct: 186 EHRRLSWFTGQRNP-----FAWKLESTDGSFDLGASQGLRFDDPDVAIASCLAGSGICPA 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             + V+       LV ++         ++  YP     + +++ F ++  
Sbjct: 241 APFAVESWVRAGALVPVLPQWSFAPRPIHLVYPGDRHLSARVRCFVDWAL 290


>gi|319795354|ref|YP_004156994.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597817|gb|ADU38883.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 306

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 135/274 (49%), Gaps = 10/274 (3%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SF  A   L +S S++ + ++ LE ++G++LF R  R + LTE+G+  H     +  +L+
Sbjct: 18  SFAKAGRLLGISASAVGKNVARLEQQLGLRLFNRTTRHVRLTEEGAMFHERCRRILDELD 77

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
             +  +Q++   P G+LR++    +G   L   L  F   +P+I++ L  +++ +D+  +
Sbjct: 78  DARAMMQDAVAAPRGRLRVSLPT-IGYRFLLPILPAFKARFPEIELDLDFNDRLVDVIAE 136

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D AIR  + +  S L+ R+L   +    A+P YL     P    +L  H+ + +  + 
Sbjct: 137 GVDVAIRSGE-LGDSQLVARRLGPFNFVLVASPAYLAEHGVPQVPADLAGHSCLRYKFVT 195

Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNL 255
              +ED++       P   P    L  N+  +++   V G G+A +PD++ +D+     L
Sbjct: 196 GGKIEDWDLPGL---PTQLP--PGLLCNNMEAMLGAAVAGLGVAYMPDFLARDSLCRGEL 250

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            R++E  +         +  + + + K++AF +F
Sbjct: 251 QRVLETHLVRQGQFSALWSSSRQLSPKVRAFVDF 284


>gi|239994575|ref|ZP_04715099.1| LysR family transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 299

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 18/288 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  +A  GSF+  AE  +++ S +S++I+ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFAQIAEMGSFSKVAEANNITNSVVSKRIAKLEKELGTQLLYRTTRKLTLTEAGQA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +    V    +     +   S + SG ++++     G  LL   + EF  L+P + + 
Sbjct: 64  LKQGAMNVKASTQEAIDTISGYSEQISGHIKMSVPTISGDLLLADAVAEFCTLHPGLSVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +++  +  D  IR    ++ SSLI R  +  H     +P Y++    P + ++
Sbjct: 124 MSLDNRFVNLVEEGFDLVIRT-GYLEDSSLIARHFLDSHWVVCTSPDYIRRKGRPKAPED 182

Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  HN + +        E +F     ++  TVD          L+        +  + G 
Sbjct: 183 LSFHNCLLYSYHTSGAREWEFTSSQGSYTITVDGAFSSDNAGALR--------KAALAGR 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           GIA +P  +V +   N  LV +  + +     VY  YP + + + K+K
Sbjct: 235 GIAYVPKCLVFEDLCNGTLVDLFPERVGKVLGVYAVYPYSRQPSRKIK 282


>gi|254245631|ref|ZP_04938952.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124870407|gb|EAY62123.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 325

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 18  NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 77

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD+ ++L
Sbjct: 78  LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRERYPDVHVEL 137

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+++   P    +L
Sbjct: 138 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVESHGVPQRPADL 197

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  +  G + P    D   LA  +     PI  P     +VN   ++      G GI 
Sbjct: 198 AQH--VCLGMVAPGFHFDEWALAGPNGDEVVPITAP---PFRVNVAEALAVAVREGMGIG 252

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP Y       + ++VR+M +  +    +Y  YP       K++ + +F+
Sbjct: 253 GLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 303


>gi|58040068|ref|YP_192032.1| transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58002482|gb|AAW61376.1| Transcriptional regulator [Gluconobacter oxydans 621H]
          Length = 319

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 128/271 (47%), Gaps = 14/271 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF  VA SGSF  AA  L LS  ++S+ +  LE  +G  LF R AR L+LT +G
Sbjct: 6   DFEGWAVFARVAESGSFAAAARSLGLSAPTVSKIMGRLEHRLGATLFQRSARHLSLTAEG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++       +  + E  + EL+E +  P G +R+A  +  G+ +L   L  FL  YPDI 
Sbjct: 66  AECLDRARRILSEGEGLETELREGTATPRGMIRLAAPMTFGREVLGPALPGFLEQYPDIT 125

Query: 124 IQLILDNKDIDISMDYADCAIR-----LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +++ LD+  +D+     + A+R     LR  +   + +  + VT  + +      L    
Sbjct: 126 LEMDLDDGVVDLLGGRFEAAVRITSGLLRPAVSGQAFLLCRSVTRFVCSEQFRARLGEVE 185

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            P  +    +  L+     +P    DF  L   D      R+   +  NS   ++     
Sbjct: 186 NPEDLT--GQPGLLYTNAAVP----DFLRLRHTDGRQASVRLKGRVSANSGDMLLPAIRA 239

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFT 268
           G GIALLPD++++ +    RI+E  + P +T
Sbjct: 240 GLGIALLPDFMLRPDLESGRIVE--VLPGWT 268


>gi|15597743|ref|NP_251237.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9948605|gb|AAG05935.1|AE004682_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 305

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA +G F  AA Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    
Sbjct: 11  LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   LE     L      PSG LR++  + L    L   +  FL  YP+++++L+
Sbjct: 71  QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPELRLELL 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+  +  D A+R    +  S L+ R L+ +     AAP YL    +PL  + L 
Sbjct: 131 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALR 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F            W    DR  I  P     +V+S L++    + G G++L+P 
Sbjct: 191 EHECIRFS----LSGHADRWTFRKDRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       LV ++ D       ++  YP + +  GK + F +F+
Sbjct: 247 LYVQAELAEGRLVELLADWKADETAIHAVYP-SRQLAGKTRVFLDFL 292


>gi|15598906|ref|NP_252400.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116051708|ref|YP_789453.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890013|ref|YP_002438877.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254236621|ref|ZP_04929944.1| hypothetical protein PACG_02624 [Pseudomonas aeruginosa C3719]
 gi|254242403|ref|ZP_04935725.1| hypothetical protein PA2G_03150 [Pseudomonas aeruginosa 2192]
 gi|296387781|ref|ZP_06877256.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313109116|ref|ZP_07795087.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9949876|gb|AAG07098.1|AE004790_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115586929|gb|ABJ12944.1| putative LysR-family transcriptional regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126168552|gb|EAZ54063.1| hypothetical protein PACG_02624 [Pseudomonas aeruginosa C3719]
 gi|126195781|gb|EAZ59844.1| hypothetical protein PA2G_03150 [Pseudomonas aeruginosa 2192]
 gi|218770236|emb|CAW25998.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310881589|gb|EFQ40183.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 301

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 124/259 (47%), Gaps = 7/259 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L  + ++++R I  +E ++G +LF +H  G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ + S+ P G++RI  T  LG   L   L + +  YP +
Sbjct: 62  GQALLKHAEAMENTALLAQEEMSQ-SISPLGQIRIGVTEGLGSVFLAPRLAQLMRHYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I+   AD AI L +P  +  +I R L    +  +A+P YL+       
Sbjct: 121 EVELVSVPRFVSITNREADIAISLDRP-SADLVITRLLTRYRLALFASPAYLEQAPPLRD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  I + D +    E     +    P         +  S ++  Q    G G+A
Sbjct: 180 RDDLGRHQWIGYVDDLLFSQELMFHHSFCRHP-----QVVFRSTSVVAQQQAAQAGIGLA 234

Query: 243 LLPDYIVKDNPNLVRIMED 261
           +LP ++   +P LV ++ +
Sbjct: 235 ILPHFMGSRDPLLVPVLPE 253


>gi|310816259|ref|YP_003964223.1| LysR family transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
 gi|308754994|gb|ADO42923.1| LysR family transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
          Length = 313

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 138/292 (47%), Gaps = 9/292 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA + SF  A+E +++S S++SR+++ LE  +G +L  R  R +  T+ G+   R 
Sbjct: 23  AFVAVAEAMSFARASEIVNVSASTLSRKVARLEDMLGTRLLERTTRRVVFTDLGAIYFRH 82

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             EV  +L+     +     +P G LR++  +  G+  L G + +F+  YP ++++    
Sbjct: 83  CREVLDRLKEADDVIASYHSEPQGLLRVSFPVAFGRLALPGIIADFIATYPKVKVEANYT 142

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  +  +R+   +  SSL+ RK+ T      A+P Y+     P +  EL  H
Sbjct: 143 DRFVDLLDEGYNAVVRI-GSLPDSSLVARKIGTNRKQLVASPEYIARYGRPQNPAELAAH 201

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
           + + F   +        W       I    +S   + +S  +I +    G+GI ++ +YI
Sbjct: 202 HCLCFSRYVRGGT---TWQFKRGEQIDTVHVSGDFRSDSSEAIYEAACHGAGIGIIANYI 258

Query: 249 VK---DNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                +  +LV ++ E  + P  + Y CY        K +AF +F+  + R+
Sbjct: 259 CGEAVERGDLVPLLPEWTVWPETSFYVCYASNKHLLPKTRAFSDFLVQRLRN 310


>gi|260776952|ref|ZP_05885846.1| transcriptional regulators LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606618|gb|EEX32892.1| transcriptional regulators LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 317

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 1/181 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V + GSFT AA   ++  SS+S+QI  LE E+G++L  R  R  +LT  G +
Sbjct: 5   NQLALFIDVVQQGSFTKAATLHNMDNSSLSKQIKKLEVELGVQLLNRSTRSFSLTPAGEE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +   L            +P G++RI   + +GQ+ LQ  + +F+  YP+++I 
Sbjct: 65  ILEQAHNLVGTLGHVHSIADSYQARPKGRIRITAPLHIGQHYLQPVITQFMRSYPEVEIN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D+K  DI  D+ D A RL + ++ SSLI +K+  I     A+  ++    EP + +E
Sbjct: 125 LQMDDKRSDIISDHFDVAFRLGR-LEDSSLIAKKIADIRPVILASESFIDQHGEPQTPEE 183

Query: 186 L 186
           L
Sbjct: 184 L 184


>gi|229524639|ref|ZP_04414044.1| LysR-family transcriptional regulator [Vibrio cholerae bv. albensis
           VL426]
 gi|229338220|gb|EEO03237.1| LysR-family transcriptional regulator [Vibrio cholerae bv. albensis
           VL426]
          Length = 295

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 17/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VA+ GSF+ AAEQL  S+  +SR +  LE  +G  L +R  R L+LTE G  L+
Sbjct: 6   LQSFMAVAKLGSFSAAAEQLDTSKGQLSRHVKSLEQMMGCLLMHRTTRRLSLTEAGQALY 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+       +  +++ +    G L++    +LG  LL   L++FL  YP+++++L 
Sbjct: 66  EKACEIDSLAYEAERIIKDLTQDNCGTLKLTAPNELGNKLLYPMLEKFLAAYPEVKLELC 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +    DI     D  +R    + S +LI R L  I     AAP YL+  +  L   EL 
Sbjct: 126 FERSLQDIEFGSFDLGLR-TTLLHSENLIARFLGRIRYGLVAAPMYLQ-AQSILHPNELQ 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H L++ G        +  WL T+ +P    +++    ++ ++Y +     + G GIA L
Sbjct: 184 SHQLLSSG--------ESEWLFTL-QPDHLCKVAVNPIVKSSNYATTRLLVLNGLGIARL 234

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P Y++++     +L+ I+       + +Y  Y +      KL+  +  IF
Sbjct: 235 PFYLIEEEVRKRDLIAILPQWQISPYELYMVYAKQRLYPKKLRDLQEAIF 284


>gi|190891440|ref|YP_001977982.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190696719|gb|ACE90804.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 290

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 139/296 (46%), Gaps = 20/296 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + +R F  VA +G  T AA++L +S+S +SR+I+ LE E+G +L  R  RG+ LTE+
Sbjct: 1   MEIEDIRTFVEVADAGGVTPAAQRLGISKSMVSRRIARLEAELGAQLLSRTTRGIALTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118
           G+      + +     + +I+    ++ P+    G+LR+A  +  G       L +    
Sbjct: 61  GATFRDYAARI-----SAEIDAARETILPAGELRGRLRVAAPLSFGPTHFAPVLAQMARR 115

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P + +     ++ +D+  +  DCAIR+   +  S+L+ R++  ++    A+P Y+    
Sbjct: 116 HPQLHVYSCYTDRFVDLITEGFDCAIRVGY-LPDSNLVARRVGPLYGKFVASPAYVAANG 174

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P +  EL  H  +  G  + +  +    L    RP G       + ++ ++++   + G
Sbjct: 175 APETPDELLNHQALMQGTEVWQVADGDQVLNI--RPQGR-----FKADNGVALLAAALEG 227

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GIA LPD +   +     LV +M     P+  ++   P A   + K++     + 
Sbjct: 228 IGIARLPDGLTDQHIATGTLVEVMTRYPPPTAGIFVVRPPAQHPSRKVRVLTEMLI 283


>gi|107101994|ref|ZP_01365912.1| hypothetical protein PaerPA_01003041 [Pseudomonas aeruginosa PACS2]
          Length = 301

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA +G F  AA Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    
Sbjct: 7   LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   LE     L      PSG LR++  + L    L   +  FL  YP+++++L+
Sbjct: 67  QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPELRLELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+  +  D A+R    +  S L+ R L+ +     AAP YL    +PL  + L 
Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F            W    DR  I  P     +V+S L++    + G G++L+P 
Sbjct: 187 EHECIRFS----LSGHADRWTFRKDRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       LV ++ D       ++  YP + +  GK + F +F+
Sbjct: 243 LYVQAELAEGRLVELLADWKADETAIHAVYP-SRQLAGKTRVFLDFL 288


>gi|330942451|gb|EGH45048.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 277

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 124/272 (45%), Gaps = 7/272 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q+
Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W      R +          NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSFTVYFCY 273
           +PD + + +    R+ E ++  +P F  +  Y
Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLY 275


>gi|307729657|ref|YP_003906881.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584192|gb|ADN57590.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 303

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 132/299 (44%), Gaps = 13/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+  SF+ AA  L +  S++SR++S LE  +G+ L  R  R L+LT QG
Sbjct: 6   DLNDIAVFVRVAQLESFSRAAHALGMPVSTVSRKVSALEERLGVTLLQRTTRKLSLTAQG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  SE    L   +  + ++  KP G LRI+  + L Q      L  FL  YP I 
Sbjct: 66  RAYFDQCSEPLSHLYDAERVITQTQKKPEGLLRISGPVMLEQEPFYAFLSAFLKDYPQIH 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   N  +D+  +  D AIR  + ++ SSLI +++         +  Y +    P   
Sbjct: 126 VDLYFTNAFLDLIAENVDVAIRFGE-LRDSSLIAQRVGRSVRQLVVSAEYARTRPLPSQP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL +H  +    LI     +  W L    + +       +    +  +  + + G GIA
Sbjct: 185 DELSQHPCV----LINARNNESEWHLVNGRKSVKVHVTGPVAARDFHVVSAFALRGHGIA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LLP         +  LVR++ +  +P   V+  YP       +L+AF + +    R W+
Sbjct: 241 LLPSSYCDPRIASGELVRVLPEWSSPEIFVHAVYPTRRFMPSRLRAFLDAL----RAWQ 295


>gi|260769861|ref|ZP_05878794.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|260615199|gb|EEX40385.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
          Length = 298

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 116/243 (47%), Gaps = 7/243 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   G+F  AAE+L LS   +S+ ++ LE  + ++L  R  R + LTE G    
Sbjct: 7   MRAFTTVVSEGNFVKAAERLDLSPQLVSKYVAQLEDALKVRLLNRTTRRVNLTEAGQAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   ++  +  L     + SG LR++  +  G + L   +  F   YPD++++L+
Sbjct: 67  ERCQQVLQDIDDMENALSNLQSQVSGTLRVSAPMSFGVHHLSKPVALFQDRYPDVKVELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A+R+   ++ S+L+ +K+  IH+   AAPHY +    P   + L 
Sbjct: 127 LTDRKVDLLDEGVDIALRIGH-LKDSALVAKKITPIHLSICAAPHYWQQHGRPTQFEALS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + N + F    P+      W     + +      S    N+   I+   +LG G A+ P 
Sbjct: 186 QLNYLRFTYSDPRA-----WFRDWPKHVSIHDFASDFSSNNGDVIVNAALLGRGYAIQPT 240

Query: 247 YIV 249
           ++ 
Sbjct: 241 FLT 243


>gi|253996590|ref|YP_003048654.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253983269|gb|ACT48127.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8]
          Length = 310

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 16/291 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F      GS   AA    ++ ++ S+ I  LE  +  +L  R  R L LTE G+  +   
Sbjct: 10  FVKAIEGGSIAAAARMQGITPAAASQNIIRLEASLNARLLTRTTRSLALTEAGAIYYEKV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             V + +E  Q  + E   +P G+L+IAT++  G+++L   +  F  +YP + I+LIL +
Sbjct: 70  RLVINDIENAQSLVTELQGEPQGRLKIATSVAFGRHVLSTIIPSFTAMYPKLSIELILTD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           ++ID   +  D +IR ++ ++   L+ +++  + +   A+P Y+    EP + + L +H+
Sbjct: 130 QNIDHVKEDIDISIRFKQQLE-LGLVAKRIAVVPVLFCASPTYISRKGEPHTPEGLQRHD 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            + F   +P      NW    D    EP +   +  N   S+ +  + G+GI  L  +I 
Sbjct: 189 CLMFR--MPTSGRLLNWGFLRDELRFEPELKPSIISNDINSLAELAIAGAGIVRLAAFIA 246

Query: 250 K---DNPNLVRIME-DVITPS--------FTVYFCYPEALKNTGKLKAFRN 288
                N  L+ + + D   PS           Y C+ +    T K+K F N
Sbjct: 247 NPLIKNGQLIPLFQRDTNNPSIMHADNEPLEFYACFRDHHAMTLKVKTFIN 297


>gi|302878608|ref|YP_003847172.1| transcriptional regulator, LysR family [Gallionella
           capsiferriformans ES-2]
 gi|302581397|gb|ADL55408.1| transcriptional regulator, LysR family [Gallionella
           capsiferriformans ES-2]
          Length = 299

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 132/286 (46%), Gaps = 17/286 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  +A   S   AAE L + ++++SR+++ +E  +G +L  R  R LTLTE G +    
Sbjct: 11  LFATIAEFHSMVRAAEHLVMPKATVSRRLANMEAALGQRLLIRTTRRLTLTEFGLEFLDH 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++   Q  ++    +P G+LR++   D  ++     +  F+  Y +IQ+ L L 
Sbjct: 71  CRRVSDEVAAVQDFVRSQDAQPHGRLRVSMPGDYARHHFSRAIATFIDAYAEIQLDLDLS 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIR+      ++L+ RK+   H   YA+P YL     P    EL +H
Sbjct: 131 SRRVDLIGERYDLAIRMGDLTDDATLVARKIDEQHFALYASPIYLALHPAPNHPDELAQH 190

Query: 190 NLITF----GDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             +      G+ +P  ++     W A    P G      L +NS   I Q  + G+GIA 
Sbjct: 191 TAVRLLSDRGNAVPWNLQSDKTLWEAI---PPGR-----LTLNSPDMIQQLLLDGAGIAA 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP    + +     LV+++ D   P+   +   P       K +AF
Sbjct: 243 LPCSFARADLQQGRLVQVLPDWSLPTVPAWAVMPMRRYLPAKTRAF 288


>gi|170693823|ref|ZP_02884980.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141241|gb|EDT09412.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 327

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A  GS+T AA  L +S S+IS+ +  LE   G+KLF R  R LTLT +G  L 
Sbjct: 10  LMAFARAASLGSYTAAARSLAVSPSAISKSVQRLEQHFGLKLFSRTTRSLTLTPEGRDLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +  + E  +  +  +  +P+G L++AT++ +G ++L   L +F   +P + + + 
Sbjct: 70  ERTQRLLREAEDIEQAVAAARAEPAGTLKVATSLPVGVHILAAALPQFRKRFPKVNVDVR 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A+R+  P   + LI R+L    + A+A+P YLK    P    +L 
Sbjct: 130 LSDRIVDLIEEGIDVAVRVGDP-GDTRLIARRLAPHRICAFASPDYLKARGTPRHPSDLQ 188

Query: 188 KHNLITF 194
            H+ + F
Sbjct: 189 SHDCVNF 195


>gi|107103225|ref|ZP_01367143.1| hypothetical protein PaerPA_01004294 [Pseudomonas aeruginosa PACS2]
          Length = 301

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 124/259 (47%), Gaps = 7/259 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L  + ++++R I  +E ++G +LF +H  G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ + S+ P G++RI  T  LG   L   L + +  YP +
Sbjct: 62  GQALLKHAEAMENTALLAQEEMSQ-SISPLGQIRIGVTEGLGSVFLAPRLAQLMRHYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I+   AD AI L +P  +  +I R L    +  +A+P YL+       
Sbjct: 121 EVELVSVPRFVSITNREADIAISLDRP-SADLVITRLLTRYRLALFASPAYLEQAPPLRD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  I + D +    E     +    P         +  S ++  Q    G G+A
Sbjct: 180 RDDLGRHQWIGYVDDLLFSQELMFHHSFCRHP-----QVVFRSTSVVAQQQAAQAGIGLA 234

Query: 243 LLPDYIVKDNPNLVRIMED 261
           +LP ++   +P LV ++ +
Sbjct: 235 ILPHFMGSRDPLLVPVLPE 253


>gi|83749040|ref|ZP_00946047.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207743067|ref|YP_002259459.1| hypothetical protein RSIPO_01234 [Ralstonia solanacearum IPO1609]
 gi|83724303|gb|EAP71474.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206594464|emb|CAQ61391.1| hypothetical protein RSIPO_01234 [Ralstonia solanacearum IPO1609]
          Length = 306

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 131/298 (43%), Gaps = 15/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT
Sbjct: 1   MSNPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G      + ++   +E  Q     S     G+LR+   + + + ++   L  FL  +P
Sbjct: 61  QDGQAFFERSQDLLADMEELQTMFHHSPQALRGRLRVDMPVGVARKIVIPALPAFLDTHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L   ++ +D+  +  DC +R+   +  SSLI R L  +     A+P YL     P
Sbjct: 121 QLEIELSSTDRRVDLIREGFDCVLRIGA-LSDSSLIARPLGQLPQMNCASPAYLARYGMP 179

Query: 181 LSIQELDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235
            S+ +LD+H L+    T G  +P       W   VD R    P    L V++  S    C
Sbjct: 180 RSLDDLDQHRLVHYVQTLGTKVP------GWEYVVDGRAAYRPMQGVLTVSTAESYEAAC 233

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G G+   P   +        LV ++         V   YP       +++ F N++
Sbjct: 234 QAGLGLIQAPVSGLAPQVARGELVDVLPQYRPAPMQVSLVYPNRRNLPVRVQVFMNWV 291


>gi|241764187|ref|ZP_04762221.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241366464|gb|EER60968.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 297

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 135/284 (47%), Gaps = 21/284 (7%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS D +  L  F  VAR+ SFT AA QL ++Q ++S  I  LE  +G++L  R  RG++ 
Sbjct: 1   MSRDNFSDLLAFIAVARARSFTRAAAQLRVTQPALSYTIRALEERLGVRLLMRSTRGVSP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLG-QNLLQGNLKEFLLL 118
           TE G +L    +  + ++E     L E   +P G +RI T ID   +++L   L +FL  
Sbjct: 61  TEAGQRLLDRLAPEFDEIEAEIQSLGELRDEPMGTIRI-TAIDYAIRSILWPKLAKFLPK 119

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP I+++L+ + + +DI+    D  +R  + +    +  R    +      +  Y  +  
Sbjct: 120 YPKIKVELVNEYESVDIAARGYDAGVRFGQELAQDMISVRIGPDVRNMVVGSKSYFADRP 179

Query: 179 EPLSIQELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIM 232
            P + ++L +H  I     T+G L       + W  T  +     R+   +  N+   + 
Sbjct: 180 VPKTPRDLTEHACINLRTSTYGGL-------YEWEFTKGKRAVNARVDGTVTFNNAYDVF 232

Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIMED--VITPSFTVYF 271
           +    G G+A LP+ +V+       LV ++ED   + P F +Y+
Sbjct: 233 EAAKAGFGLAYLPEDMVRPYVAKGQLVSVLEDWCPVWPGFHLYY 276


>gi|221200934|ref|ZP_03573975.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221207130|ref|ZP_03580141.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221173204|gb|EEE05640.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221179506|gb|EEE11912.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 304

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 136/292 (46%), Gaps = 19/292 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  +G+F  AAE + ++   +SR I+ LE  + I+LF R  R + LTE+G + +  
Sbjct: 14  VFAAVVDAGTFVGAAEVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVALTEEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE         +    GKLRI     + + +L   L  F+  +P+++I+ I  
Sbjct: 74  VMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRTVLGQPLDAFMDTHPELEIEFIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK- 188
           +   D+ MD  D A+R  +P ++S+LI RKL+   +   AAP Y+     P   ++L+  
Sbjct: 134 DSLGDLVMDGFDLAVRFGEP-KASTLIARKLLDSRIVTVAAPSYVARWGRPAKPEDLEGR 192

Query: 189 -HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242
            H  + F +  P+  + F W     R     RI       L VN   +++  C+ GSGIA
Sbjct: 193 HHRCLEFRN--PETGKPFQWEFHRKR----KRIVVNTQGRLTVNDPGALLNACLAGSGIA 246

Query: 243 ----LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               L  + ++ D   L+ +  + +   + +Y  Y        K +AF +F+
Sbjct: 247 QMLLLGAEPLIADG-RLINLFPEWVDERYPLYVYYASRHHVPAKTRAFLDFV 297


>gi|16126756|ref|NP_421320.1| LysR family transcriptional regulator [Caulobacter crescentus CB15]
 gi|221235538|ref|YP_002517975.1| LysR family transcriptional regulator [Caulobacter crescentus
           NA1000]
 gi|13424074|gb|AAK24488.1| transcriptional regulator, LysR family [Caulobacter crescentus
           CB15]
 gi|220964711|gb|ACL96067.1| transcriptional regulator, LysR family [Caulobacter crescentus
           NA1000]
          Length = 292

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 121/274 (44%), Gaps = 13/274 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F   A + SF+ AA +L LS S +SR ++ LE  +  +L YR  R ++LT+ G 
Sbjct: 4   WDGIDEFVATAEAESFSRAARRLGLSTSGVSRAVATLEERLQTRLLYRTTRRVSLTDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +     + E    P G LR+  +   G+  +   +  F+L +P + +
Sbjct: 64  AFLARARRLIAERDEALASVGEDDGDPRGLLRMTCSTAYGERFVVPAVNRFMLSHPKLAL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ LD+   DI  +  D AIR  + +  S LI ++L +      AAP YL     P SI 
Sbjct: 124 EIDLDDAVRDIVSEGFDLAIRFGR-LTDSRLIAKRLASRTRRLCAAPSYLTRAGAPRSIA 182

Query: 185 ELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I    D  P            +R I        + NS  +++   +LG G+  
Sbjct: 183 DLAAHTCILGAADTWP--------FRDGEREIAFKPQGRWRCNSGQAVLDAALLGLGVCQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           LP++ V     +  LV ++E        V+  YP
Sbjct: 235 LPNFYVDAAISDGRLVPLLEANRPEDEGVWAVYP 268


>gi|226945602|ref|YP_002800675.1| LysR family regulatory protein [Azotobacter vinelandii DJ]
 gi|226720529|gb|ACO79700.1| Regulatory protein, LysR family [Azotobacter vinelandii DJ]
          Length = 301

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 12/283 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT AA  L LSQS++S  +  LET++G +L  R++R ++ TE G +L 
Sbjct: 13  LVAFVAVAREKSFTRAAAHLGLSQSAVSHAVRALETKLGARLLARNSRTVSPTEIGERLL 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +    +++     L      P G +R+  +    +++L   LK+FL  YP IQ++L 
Sbjct: 73  QSVAPQLEEIDAEMSALSALRDSPMGTIRVTASDHAIRSVLAARLKKFLPKYPGIQVELF 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            DN  +D++ +  D  +RL + +    +  R    I     A   Y  N   P    +L 
Sbjct: 133 ADNGLVDLAAERFDAGVRLGEIVAQDMIAVRIGPDIRFAVVATKGYFANHPLPGKPDDLM 192

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +HN +     +P     + W      R +       L  NS    +   + G G+A +P+
Sbjct: 193 QHNCVNL--RLPTYGGLWAWEFEKAGRQLNVRVNGQLTYNSIYDCLDAAMEGLGVAYVPE 250

Query: 247 -----YIVKDNPNLVRIMEDVITPSFTVY-FCYPEALKNTGKL 283
                YI     +LV ++ED   P ++ Y   YP   + +G +
Sbjct: 251 DMALPYI--RTGHLVSVLED-WCPYWSGYHLYYPSRRQPSGAM 290


>gi|327192433|gb|EGE59390.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 300

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 18/264 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G F+ AA    ++ S++S+ ++ LE  +GI+L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERGGFSSAATARRMTPSAVSKLVARLEARLGIRLVNRSTRRLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +  +  +   +   + E Q SS  + +G++RI T+   G ++L   +  F+ L+P + + 
Sbjct: 71  YERSIAILADI--AEAERQASSGEEAAGRIRINTSGSFGNHVLAPLVPAFMTLHPAVTLD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  + AD AIR   P++SSSLI R+L        A+P YL    EP S+ +
Sbjct: 129 IAHTDRVVDLMEERADVAIRA-GPLKSSSLIARQLGATRKLIVASPDYLGRHGEPRSVAD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241
           L +H  I F     + +E +       R  GE    P  S +QV    ++    + G+G+
Sbjct: 188 LRRHCRIGFS--YARAIEGWPM-----RESGETVTIPIPSGIQVADGEAMRHLALSGAGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDV 262
           A L  + V+   +   LV ++E+ 
Sbjct: 241 ARLAAFTVRADIEAGRLVPVLEEA 264


>gi|227823017|ref|YP_002826989.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227342018|gb|ACP26236.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 299

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 132/270 (48%), Gaps = 9/270 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF   A +G F+ AAE+L+LS+S++ + I+ LE  +G++LF+R  R  +LTE+G   +  
Sbjct: 9   VFVEAAEAGGFSAAAERLNLSRSAVGKTIARLEQRLGVRLFHRTTRAQSLTEEGQLFYDS 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +   ++ T +  L+    +  G+LRI+  +  G+  +    ++ L  +P + + L  +
Sbjct: 69  CQKALGEIRTAEALLESGRQEIRGRLRISMPVLFGRQCVAPLFRDLLRRHPHLDLDLSFN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R       S L+ R +    M   A+P YL     P ++ EL  H
Sbjct: 129 DRVVDLLDEGFDLAVRNGSSGNDSGLMTRAVAEQRMTVCASPTYLAARGAPQTVGELAAH 188

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALLPDY 247
             + +     +  +   W   V+    E  +  + L+++   +I      G G+A LP +
Sbjct: 189 TGVVY----YRGGQQRPWSFPVEGRTSEAILPNTRLRLDDLAAIADAAAEGLGLAWLPCW 244

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           +V++      LVR++ D     F V+  +P
Sbjct: 245 LVRERVQRGELVRVLTDRPGLVFKVHAVWP 274


>gi|241666688|ref|YP_002984772.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862145|gb|ACS59810.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 301

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 123/288 (42%), Gaps = 17/288 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    +    SF  AA++L LS S++S  +  LE  +G++L +R  R +  TE G +L 
Sbjct: 10  LRALSAIVNHRSFRKAADELGLSPSTLSHMMRSLEANMGVRLLHRTTRSVAATEAGERLV 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + ++   +    E+ E    PSG LR+ T+    + LL   +  FL  YPD+ + L+
Sbjct: 70  TRLTPLFRDFDLALEEVNEFRGHPSGTLRVNTSEIAARVLLDAAVPTFLTCYPDMSLDLV 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            DN+ +D+  D  D  IRLR+ +    +           A A+P YL     P +   L 
Sbjct: 130 TDNRLVDVVADGFDAGIRLREAVPLDMIAVEFGGDTRFVAVASPAYLAAHPAPQTPDALK 189

Query: 188 KHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H  I F    G L     E       VD P        L ++    + Q    G GIA 
Sbjct: 190 THACIRFRLPSGKLFRWEFEKHGHEIAVDVP------GVLTLDHVELMAQAAAKGLGIAY 243

Query: 244 LPDYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           + D   +   ++  LV +++D     P   +Y  YP        L+AF
Sbjct: 244 VSDRTARPFLESGALVTVLDDWCPAIPGLCLY--YPGHRHVPQGLRAF 289


>gi|146311748|ref|YP_001176822.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145318624|gb|ABP60771.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 306

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 128/277 (46%), Gaps = 13/277 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA QL +SQS++S  +  LE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRNLEARLDVRLLTRTTRSVVPTEAG 64

Query: 64  SKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            +L  R+T  +  ++E     L++   +P+G +RI+        +L   LK F+  YPDI
Sbjct: 65  EQLLVRLTPHLV-EIEQELTALRDRRDRPAGNIRISAGEHAMSAVLWPVLKPFMAHYPDI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I++ +DN   DI     D  +RL + I    +  R    + M    +  Y      P +
Sbjct: 124 NIEVTVDNGLTDIVDGRFDAGVRLGEQIAKDMIAMRIAPDMRMAVVGSAAYFAQYGVPQT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
            + L+ H  I     +P     + W    ++   E R+     L +NS    +   V G 
Sbjct: 184 PEALENHRCINM--RLPTLGGLYAW--EFEQNGREMRVRVDGQLTLNSLPQRLDAAVAGL 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           G+A +P   V D   +  LVR++E    PSF  Y  Y
Sbjct: 240 GLAYVPQDTVVDLVADGQLVRVLES-WCPSFEGYHLY 275


>gi|187733277|ref|YP_001881634.1| putative DNA-binding transcriptional regulator [Shigella boydii CDC
           3083-94]
 gi|187430269|gb|ACD09543.1| transcriptional activator AaeR [Shigella boydii CDC 3083-94]
          Length = 309

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 4/239 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +        E         R I +        N  ++++++   G+GIA +P
Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQ---GIFVTNDPMTLVRWLTAGAGIAYVP 240


>gi|299534125|ref|ZP_07047477.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718034|gb|EFI59039.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 321

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 99/189 (52%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F +V  +G FT AA++L +++S++ + ++ LE  +G +L  R+ R  TLT +G  
Sbjct: 8   EGVSTFVLVVEAGGFTAAAKRLGVTRSAVGKAVARLEARLGSRLLQRNTRTQTLTAEGQI 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   +    +L+  + +L    ++P G+LR++     GQ  +   L     LYP + I 
Sbjct: 68  YYERCTRALKELDAAEADLDSGRMEPIGRLRVSVPEGFGQLCVAPILLNLTRLYPQLSID 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  D AIR+     S +L  R L T H+   A+P YL     P  ++E
Sbjct: 128 LSFGDRTVDLIEEGFDLAIRIGPMQDSGTLSARLLGTQHISIGASPAYLARHGTPGKLEE 187

Query: 186 LDKHNLITF 194
           LD H +I++
Sbjct: 188 LDGHAVISY 196


>gi|296115314|ref|ZP_06833953.1| transcriptional regulator protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978137|gb|EFG84876.1| transcriptional regulator protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 298

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 7/247 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F VVA  GSFT AA +L  SQS++S  +  LE  +G++L  R  R + LT+ G
Sbjct: 5   DLTDLNSFLVVAEEGSFTRAAIRLETSQSAVSNTVRRLEERLGVRLITRTTRKVVLTKAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       +  +++    +     +P+G +RI+T+     +++    K  +  YPDIQ
Sbjct: 65  ERLLNSVGPAFSFVDSELTAIANLRDRPAGLVRISTSEFAAHSIVWPAAKRLMTTYPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    DI     D  +RL + I    +  R    + M A A+P YL+   EP S 
Sbjct: 125 VEISIDATLTDIVDQRFDAGVRLGELIAQDMISVRIGPDVRMVAVASPTYLEGRTEPNSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
            +L +H  I      P     + W    ++   E +I        NS    ++  + G G
Sbjct: 185 HDLAEH--ICIAVRAPTRGSIYAW--EFEKDGDELKIKVQGQFTSNSGSLAIKAAIAGLG 240

Query: 241 IALLPDY 247
           IA +PD+
Sbjct: 241 IAFVPDF 247


>gi|188532448|ref|YP_001906245.1| putative DNA-binding transcriptional regulator [Erwinia
           tasmaniensis Et1/99]
 gi|188027490|emb|CAO95337.1| Putative temperature-dependent LysR-family regulator A [Erwinia
           tasmaniensis Et1/99]
          Length = 305

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 4/247 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA+Q+ LS S++S+ ++ LE E+ +KL  R  R L LTE G    
Sbjct: 7   MSVFTKVVELGSFTAAAQQMQLSVSAVSQIVARLENELQVKLLNRSTRNLGLTEAGKIYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  + +    +L   +  P G LRI ++  + QNLL    KE L  YP +++ L+
Sbjct: 67  QGCRRMMAEAQQVHEQLWAFNNTPVGTLRIGSSSTMSQNLLAPMAKEILQQYPGLKVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA HYL     P    ++ 
Sbjct: 127 TGIPAPDLIADGLDLVIRVGD-LQDSSLYSRRLGVMPMVVCAAKHYLVQFGTPEKPSDIG 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +  + P    DF  ++     I          N   +++++   G+GIA +P  
Sbjct: 186 NHSWLEY-SVRPD--NDFELISPEGTAIRLSPQGRFATNDAQTLIRWLKAGTGIAYVPLM 242

Query: 248 IVKDNPN 254
            + D  N
Sbjct: 243 WIIDEIN 249


>gi|126458495|ref|YP_001076887.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167725129|ref|ZP_02408365.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|217422251|ref|ZP_03453754.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|242312916|ref|ZP_04811933.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|126232263|gb|ABN95676.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|217394482|gb|EEC34501.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|242136155|gb|EES22558.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 313

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 126/296 (42%), Gaps = 25/296 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA+ LHL+QS+IS+QI  LE  +G  LF RHARGL LT +G  LH
Sbjct: 13  LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T   +  L  T  +L      P   L+++         L   L EF  L+P   ++L 
Sbjct: 73  EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ID   +S D  D AIR   P    +L    L    + A AAP YL   R P    
Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYLD--RHPPRAT 185

Query: 185 ELDKHNLITFGDL-----IPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                +++   D       P+ +E   WL A V    G PR    + N     +   V G
Sbjct: 186 AKWVSSVVPLHDASAWPEAPRYVEWRTWLDAVVPGYAGAPRGP--EFNLASLAIAAAVAG 243

Query: 239 SGIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+ +    +V D     R++      V  P+     C   A     ++KAF  ++
Sbjct: 244 QGVVVCRQALVDDEIARGRLVNVFARRVPAPAQYKAIC---ARPEDARVKAFVGWL 296


>gi|167572228|ref|ZP_02365102.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 323

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 27/302 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTLSQTMLSRLLPEFLHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++Q+ + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L+    P
Sbjct: 125 VRVQIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPGLLQQNAPP 184

Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231
           +   +L + + +    GD        FN +A    P G       EPR   L     ++I
Sbjct: 185 IVPADLSRFDTLDTPSGD----GRHVFNLIA----PDGTRHAHEHEPR---LVTADLMTI 233

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +  + G GIA LP+ +  +      L  +M     P+  +Y  +   +   G   A R 
Sbjct: 234 REAVLDGVGIAALPESMYGNALRAGQLSPVMPGWTLPAPQLYAVF---VSRQGMPPAVRA 290

Query: 289 FI 290
           F+
Sbjct: 291 FV 292


>gi|89069333|ref|ZP_01156692.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89045100|gb|EAR51171.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 295

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 125/287 (43%), Gaps = 12/287 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW++ R F V A  GS + AA  L L+Q ++ RQ+  LE E+G+ LF R  RGL LT
Sbjct: 6   VTFDWNRARAFLVTAEEGSLSAAARALKLTQPTLGRQVEALEAELGVALFERTGRGLRLT 65

Query: 61  EQGSKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             G  L    R+  +    L        E+     G++ I+ +      LL   L     
Sbjct: 66  AAGHALLDHARLMGDGARALSLAAWGQTEAL---EGEVAISASDADASYLLPPILARLHA 122

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P I+I++++ N   D+S   AD A+R  +P  +S LI RKL       YAAP YL+  
Sbjct: 123 AEPGIRIEVVVSNDLSDLSRREADIAVRNVRPT-ASDLIARKLRDATARLYAAPAYLERI 181

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P   +     + I     I       + LA     +GE      +  ++  + +    
Sbjct: 182 GRPDRPEGFADADFIE----IDGRGSLRSLLAAQGFALGEANFP-YRCRNFAVMWEMVRR 236

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G GI +L D I   +P + R        +F V+      +  + +L+
Sbjct: 237 GMGIGILDDRIGDPDPAVERAAPFFAPVAFPVWLVTHRDIARSRRLR 283


>gi|325122344|gb|ADY81867.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 310

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 13/255 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGT-LTDSSFHARIFGTQKYHLAASPQYIAKYGTLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236
              EL++H  + +     K  E  N WL  V +P  E    P    L  N+  S+M   +
Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWL--VRKPAEEWIHYPLTPLLSSNNAESLMTAAL 237

Query: 237 LGSGIALLPDYIVKD 251
            G GI L PD+++ +
Sbjct: 238 HGMGIILFPDWLIGE 252


>gi|157372399|ref|YP_001480388.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157324163|gb|ABV43260.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 310

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 17/285 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   + VF  V   G+F  AA+ L++++S++ + I+ LE  +G+ LF R  R  TLT
Sbjct: 1   MRTDLKGIPVFVAVVECGNFAQAAQDLNITRSAVGKAIARLEERLGVTLFQRTTRNQTLT 60

Query: 61  EQGSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           E+G  L+   R+  +   + E   I L ++ VK  G+LRI+  + LGQ  +   L     
Sbjct: 61  EEGEILYQQSRIALDCIREAEDV-IHLGKTQVK--GRLRISLPVLLGQRCIAPILLTIAK 117

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP ++++L  +++ +++  +  D A+R+ +   SS L  R+L    M   A+  YLK  
Sbjct: 118 SYPQLKLELSFNDRQVNLFDEGFDLAVRIGELADSSFLQARRLGQHGMILCASAQYLKTH 177

Query: 178 REPLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
             P ++ EL +H  I +   G ++   + D        RP      + L  + +++I   
Sbjct: 178 LVPRTLSELQEHPAIGYQLGGKILNWQLNDMEGREINFRP-----NTVLAADDFVAIAAA 232

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
            +   G+A LPD++V        + +I+ +  +  F +   + EA
Sbjct: 233 VISDLGVAWLPDWLVSKEIAQGQIQQILPECTSMKFAISAVWLEA 277


>gi|330992446|ref|ZP_08316394.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp.
           SXCC-1]
 gi|329760645|gb|EGG77141.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp.
           SXCC-1]
          Length = 314

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 136/290 (46%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA  GSF  AAE + LS+ ++S+ +S LE  +G+ LF R++R ++LTE G
Sbjct: 6   DLEAWAIFAKVAERGSFARAAEDIQLSKPTVSKAVSRLEQALGVALFNRNSRQMSLTETG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    S +  + E  + + +  ++ PSG +R+A  +  G   L   L +FL  YP+I 
Sbjct: 66  RGLLGHASRILAEAEAAETQARGGTLAPSGLIRVAAPMTFGVRHLSPLLPDFLRQYPEID 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +   +  +D+     D A+R+   +  S+L  R+L  + +   A+P Y+     P   
Sbjct: 126 ITMDYSDALVDLVAGGYDVALRIAS-LADSALRARRLCNVRLVLVASPGYVAQAGHPDDP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L+ H    + +     M   +  A+  R     + + L+ ++  + +     G G  L
Sbjct: 185 RALEGHRSFVYTNTTAPGMIRLHERAS-GREYVLSQTARLRSDNAEAFLPALEAGLGFGL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++V +   +  + R++         +Y   P +     ++  F +++
Sbjct: 244 FPEFMVWEGLKSGRITRLLPQWEAAPVALYLVTPASTLRPIRVTTFIDYL 293


>gi|300311233|ref|YP_003775325.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074018|gb|ADJ63417.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 315

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 18/295 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++ VF  V  +GSF+ AA QL  + S+ISR I+ LE  +G +L  R  R L L+E G  
Sbjct: 11  NEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGQD 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +H    ++ +  +           +P G++R++    +G  L+  ++ +FL  +P + + 
Sbjct: 71  IHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDFLAAHPKVDVL 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+++ +D+  D  D AIR+        L+ R+L+ I     A PHYL     P   Q 
Sbjct: 131 LRLEDRYMDLIDDEVDLAIRITD-HPPPGLMGRRLMRIDHLLCATPHYLATHGTPAHPQA 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALL 244
           L +H+ I  G+       D  W            +      ++  +    VL   GIA L
Sbjct: 190 LKEHSCIYLGE----SPADARWRFRRQGKSVNVEVRGRYAANHTGVRLDAVLRHLGIASL 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFC------YPEALKNTGKLKAFRNFI 290
           P +I +   +  +LV+++      SF  ++C      YP       +L AF  F+
Sbjct: 246 PYFIARPALEEGSLVQVLPQW---SFRTHYCGELWALYPATRHLPPRLGAFVQFL 297


>gi|270260973|ref|ZP_06189246.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044457|gb|EFA17548.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 304

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 129/279 (46%), Gaps = 14/279 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F    ++G F+ AAEQL LS+S++ + ++ LE  + ++LF R  R L+LT++G   +
Sbjct: 10  IRAFVQAVQAGGFSRAAEQLGLSRSTVGKAVARLEQRLQVRLFQRTTRSLSLTDEGQLFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    LE  + +L   +  P G+LR++  +  GQ  +   L      YP + ++ +
Sbjct: 70  DDCLKALAALEAAESQLAARARTPEGRLRVSLPVLFGQKWVLPPLLALTDRYPQLHLEAL 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             N+  D++ +  D A+R+  P  ++++  R+L        AAP YL    EP ++ EL 
Sbjct: 130 FSNRASDLAEEGIDLAVRIGSPGDAAAITARQLGEQKQILCAAPIYLARQGEPGAVAELL 189

Query: 188 KHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +H  I     G   P  + D        +P    R+  ++     +++     G GIA+L
Sbjct: 190 QHQAIAMLRDGHSQPWELLDPQGKTQRLQPPARLRLGNME-----AVLSAACAGHGIAML 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNT 280
           P ++  D      L  I+     P   +   +   LK T
Sbjct: 245 PRWLAHDALTAGTLREILPGSCGPGLAINVVW---LKGT 280


>gi|270260886|ref|ZP_06189159.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044370|gb|EFA17461.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 297

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 128/296 (43%), Gaps = 32/296 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G FT AA+ L + ++++++ I  LE  +  KLF R  R +++T +G   +
Sbjct: 8   IRVFNRVVETGGFTRAADSLRMPKATVTKLIQNLEDHLQTKLFQRTTRSVSVTPEGECYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T +   +LE  +  + ES   P G LRI       + LL   L +F+  YP IQI L 
Sbjct: 68  QRTVKWLAELEQMEGCMTESQSAPQGVLRIDAGGSTARQLLVPALPDFIERYPQIQIDLG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  D ADC IR   P+  SSLI R+L  +     A P YL     P    +L+
Sbjct: 128 VSDRLIDLINDSADCVIR-SGPLADSSLIARRLFELEWVTCATPAYLARYGTPKHPCDLE 186

Query: 188 -----KHNLITFGDLIPKCMEDFNWLATVDR------------PIGEPRISCLQVNSYLS 230
                 H      D I         L  VDR             + E         + L 
Sbjct: 187 LGYPLAHYRHALNDRIQP-------LHFVDRGKEIDIQHRYHVSVNESNALLAAALAGLG 239

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I+Q     +   L       DN  LV ++ D   PS  +Y  YP     + KL+ F
Sbjct: 240 IIQTFRFMAQPHL-------DNGELVSLLHDWQPPSEQMYVVYPSNRHLSAKLRVF 288


>gi|261823436|ref|YP_003261542.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261607449|gb|ACX89935.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 295

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 132/283 (46%), Gaps = 7/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   +  GSF  AAE L +S   +++Q++ LE  +G++L  R  R  +LT+ G + +
Sbjct: 7   MNTFVKASELGSFAAAAEVLGISPQMVAKQVAWLEASLGVRLLNRTTRRQSLTDIGLRYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  + E      +E  V PSG +++   +  G +LL   +  +L  YPD QI L 
Sbjct: 67  ERCKVVLAEAEDADAIAREMQVTPSGIIQVNAPVTWGSHLLAPFITHYLARYPDTQIALT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D   +  +  IR+ + +  SS++   L    + A A+P YL     P +   L 
Sbjct: 127 LNDRMVDPIEEGFEVIIRIGE-LADSSMVAWPLQPYSLIACASPDYLVREGVPDTPSSLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +G  +        W+   D    E R    L  N + +++   + G GI L P+
Sbjct: 186 RHASLIYG--VRTAAASCRWVFQKDGKTEEVRPEGRLFANDWNALLHAAIEGYGITLGPE 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +++   D   LV+++ D   P+  V+   P   +   K+K F
Sbjct: 244 VVLRKEIDRGRLVQVLSDYNGPARPVHVMVPVGRRAAVKVKTF 286


>gi|240949139|ref|ZP_04753486.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           NM305]
 gi|240296442|gb|EER47078.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           NM305]
          Length = 296

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 141/305 (46%), Gaps = 26/305 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS- 64
           + + +F  V  +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT  G  
Sbjct: 5   EAMNIFLTVVETGSFTATAERLDLSRPMVTRAVALVEEWFNARLLQRTTRRVSLTSAGER 64

Query: 65  ------KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
                 K+  + +E+   +   Q ELQ       G LRIA+    G   L   +K+FL  
Sbjct: 65  AVTHCQKMVDLAAEIEQDILAQQGELQ-------GSLRIASNSSFGSTHLLLAIKDFLQR 117

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +P + IQ  L ++ +++  +  D AIR   +P    +LI R L T H    A+P YL   
Sbjct: 118 HPKLNIQFQLSDQSVNLIDERIDLAIRFTNQP--DPNLIARPLATCHSLLVASPEYLAQK 175

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P + Q+L +H  +   ++  K  + +      +R I     S    N   +++   + 
Sbjct: 176 GVPQTPQDLAEHIYLAHANINRKEWKFYQ----NEREISLELTSQFTTNDTSALLNLTLA 231

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             GIA+LP Y++ +   +  LV I+ D   P++ +Y  Y    K    ++   +F+  + 
Sbjct: 232 SGGIAMLPKYLLNEHLASQQLVPILTDWQLPTYQIYALYSSRHKLPLTIRTLVDFLVERF 291

Query: 295 R--DW 297
           R  +W
Sbjct: 292 RGVNW 296


>gi|170721926|ref|YP_001749614.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759929|gb|ACA73245.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 300

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 133/298 (44%), Gaps = 26/298 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A  QL + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62

Query: 64  SK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            + LH   + +       +     SS +P G+LR++  + L    L   +  FL LYP +
Sbjct: 63  ERYLHHCQAMLLEAEAADEAVASMSS-EPRGRLRVSCPVALAHAFLPDVISRFLELYPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+ ++L N+ +D+  +  D A+R+R+   +  +L+ R+L    M   AAP +  + REP 
Sbjct: 122 QLDMVLLNRRVDLISEGIDVALRVRELGDEDPALVTRRLRQAQMQLVAAPGFADHVREPS 181

Query: 182 SIQEL------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            +  L      +   L+ F  L P   +    L        EPR++   ++ ++      
Sbjct: 182 ELASLPVLGAAEADRLVHFRLLGPNGRQQEIAL--------EPRLA---IDDFVVRNAAV 230

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G G   LP    +   +   LVR++ D   P   +   YP      G L A R +I
Sbjct: 231 RAGLGFTALPSMFCEHELERGELVRLLPDWSLPGGYLQAVYPH---RRGLLPAVRVWI 285


>gi|78486341|ref|YP_392266.1| LysR family transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78364627|gb|ABB42592.1| transcriptional regulator, LysR family [Thiomicrospira crunogena
           XCL-2]
          Length = 301

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 143/293 (48%), Gaps = 11/293 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++VF  V  +G    AAEQL+L++S++SR+++ LE  +  KL  R  R  +LTE G  
Sbjct: 5   EDIQVFVRVVEAGGIGKAAEQLNLAKSAVSRRLADLEDRLETKLINRTTRKSSLTEAGQI 64

Query: 66  LHRVTSEVYHKL-ETTQIEL-QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     V   + E  Q+ + +E+S++  G LR+A  +  G   L   L  F   +P++ 
Sbjct: 65  YYEKALSVLDSVTEMNQMTVSREASLE--GTLRLAVPLSFGLEHLSPALDRFAQEHPNLT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++++DI  +  D A R+   ++ S++  RK+  I     A+P YLK    P + 
Sbjct: 123 LHVDFSDREVDIVEEGFDLAFRITD-LKDSTIQARKIAPIRFVMCASPGYLKKYGTPKTA 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H ++ +G    K  E ++ +   ++       S L  N+   ++     G GIAL
Sbjct: 182 EDLKQHKILRYGS---KGAESWHLIGPDNQTHHLNLPSHLYSNNGSFLLSMAKAGHGIAL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P +I  +      L  ++ D   P    Y  YP+    + K +AF +F+  +
Sbjct: 239 EPTFIAWEALATGELTPVLTDYRIPIMHAYAVYPQNRFLSQKARAFIDFLVAR 291


>gi|323497561|ref|ZP_08102578.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           sinaloensis DSM 21326]
 gi|323317310|gb|EGA70304.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           sinaloensis DSM 21326]
          Length = 294

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 127/278 (45%), Gaps = 15/278 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  G+F  AAE   +S + + + I  LE ++G  L +R  R  TLTE G+   
Sbjct: 7   MKVFCFVAEHGNFRQAAEYFAMSPTMVGKHIKHLEIQLGTSLIHRTTRKQTLTEAGNIYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +  + +   KP G++++   +  G  +L   L +FL+ YP+I I L 
Sbjct: 67  HECQRILQDISDMESAIHDIGNKPQGRIKLNAPVTFGSKVLAPLLAQFLMDYPNIHIDLD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN  ID     AD   R+ + +  SSL+ R +   HM   A+P YL N      +  L 
Sbjct: 127 LDNTLIDPYEIEADFIFRVGE-LNDSSLVARFIGHYHMTYCASPSYLTNRPWSGDLSSLG 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ + F     +  E    L + DR     +   L  N+   + Q  + G+GI L P  
Sbjct: 186 QHDCLGF-----RYRETSEALTSKDRHRDNIK---LMANNGEVLRQAALAGAGIILQPKI 237

Query: 248 IVKDNPNLVRIME------DVITPSFTVYFCYPEALKN 279
           +V ++    R++E          P   VY    ++LKN
Sbjct: 238 LVDEDIRSGRLIEITTQTHQAAKPIHLVYRDKHQSLKN 275


>gi|283787189|ref|YP_003367054.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282950643|emb|CBG90315.1| LysR-family transcriptional regulator [Citrobacter rodentium
           ICC168]
          Length = 311

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 137/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  +GSF+ AA  L  + + ++++I  LE+ +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHTGSFSAAAAALGQTPAFVTKRIQILESALATTLLNRSARGVALTECGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    E+ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTRYQRLVDEVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID++ D  D  IR+   I     I   L        AAP YLK   EP ++QEL 
Sbjct: 131 LFDRQIDLAQDNIDLDIRINDAI-PDYYIAHLLTKNSRILCAAPAYLKKYSEPKTLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGKEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+    +  LVR++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVQPFLASGKLVRVLPEY-AQSANIWAVYREPLYRSVKLRVCVEFL 292


>gi|254502719|ref|ZP_05114870.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438790|gb|EEE45469.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 311

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 1/190 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA  GS + A  ++ LS S+ S +++ LE   G +LF R  R   LTE G  L 
Sbjct: 1   MEFFIRVAELGSLSGAGREIGLSPSAASARLTNLEKTFGAQLFARTTRKTALTEAGRVLL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  H+L+  +  L+ +   P G LRI+     G+  +  +L EF  LYPD+QI++ 
Sbjct: 61  DHARSAIHELQQARQALEATQDSPQGALRISCNTFFGRKHILPHLVEFRSLYPDVQIEMD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D AIR   P+  SSL+ R+L        A+P YL     P + ++L+
Sbjct: 121 ISDRMVDVVQEGYDMAIR-GAPLADSSLLARRLGGNPRALCASPDYLARKGRPKTPEDLN 179

Query: 188 KHNLITFGDL 197
            H+ I+   +
Sbjct: 180 NHDCISMASV 189


>gi|187924364|ref|YP_001896006.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715558|gb|ACD16782.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 323

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 139/295 (47%), Gaps = 16/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +F  AAE++ ++Q ++++Q+  LE  +G +LF R  RGL LT  GS 
Sbjct: 14  NALRAFEAAARHLNFRVAAEEIGVTQGAVAQQVRNLEDVLGHQLFDRVPRGLALTANGSI 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S V   L T      E+    +  L ++TT       L   L  F   +P I+++
Sbjct: 74  YF---SSVQRAL-TIIANATEALAHRASSLTVSTTPSFASKWLIPRLATFTDAHPSIEVR 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQ 184
           +I D +      D  D AIR  KP     L    L  + ++A  +P  L + R PL    
Sbjct: 130 VIADQQLSTFKGDGVDIAIRHGKPPFGKGLAADPLFPVDIYAVCSPS-LADARRPLKKPS 188

Query: 185 ELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H L+    +L P+ +E  N    VD   G PR S     S L+I    + G GIAL
Sbjct: 189 DLKRHVLLHDSHNLWPEFLEALNEGGHVDASKG-PRFS----QSALAI-DAAISGQGIAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             + +V+ +     L R+ +  +  S   Y  YPE  +++  ++A R+++  +AR
Sbjct: 243 TSEQLVERDLAAGRLCRLFDFALHLSLGYYVVYPEDRRDSETIRAMRDWLITQAR 297


>gi|113866246|ref|YP_724735.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113525022|emb|CAJ91367.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 304

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 129/302 (42%), Gaps = 18/302 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  V   GSF+ AA  L ++ S++SR +S LE  +G  L  R  R   LTE G  
Sbjct: 7   NAMAVFARVVECGSFSAAALDLGMTPSAVSRHVSRLEATLGASLLQRTTRAFALTELGQS 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + +            E    P G LR++  +  GQ  L   L   L  YP + +Q
Sbjct: 67  VYAACARMTAAARDVTALAGEHGGTPHGVLRVSAPVSFGQAWLAPRLPALLARYPGLDLQ 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D A+R+ + + +  L  R L  +     A+P YL     P +  +
Sbjct: 127 LTLADRMVDLVEEGMDVAVRIAREL-APGLAARPLREVRYRLVASPGYLARHGTPATPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSG 240
           L     +  G        +F     +    G  ++       L +N+ L+IM      +G
Sbjct: 186 LPAARCLYLG------YGNFGERWAMRHQAGGEKVEVRIPPRLTLNNSLAIMSMVERDAG 239

Query: 241 IALLPDYIVKDNPNLVRIME-----DVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I L+PD+ + D  +  R++      D++ P   T Y  Y        K++AF + +   A
Sbjct: 240 IGLVPDFSLGDALDQGRVVTVLADWDILEPYIGTAYAVYTPTRHVPPKVRAFVDHLAGTA 299

Query: 295 RD 296
            D
Sbjct: 300 DD 301


>gi|50119295|ref|YP_048462.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609821|emb|CAG73255.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 298

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 144/301 (47%), Gaps = 23/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F VV  +GS T AAEQL  + S ISR +  LE ++G  L +R  R L+L+
Sbjct: 1   MKVTLEELQAFVVVIDTGSITAAAEQLGQTTSGISRALRRLEDKLGTTLLHRTTRRLSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+        V H +E  + ++     +PSG+LRI +     Q+++   + EF   YP
Sbjct: 61  EEGTMFLEHARGVIHAVEHAEEQVLLRHEQPSGRLRINSASAFIQHVIVPLVPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+   + D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 KIILELNTDDFIIDLLEQHIDIAIRI-GTLKDSTIHARPLGASKLRIVASPDYLQQHGTP 179

Query: 181 LSIQELDKHNLITFGDL-------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            +++ L  H  + F  +       +   ++DF            P    L  ++   + Q
Sbjct: 180 ETVESLADHICLGFTQVESLNHWPLRHGLQDFY-----------PITPALLASNGEILRQ 228

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289
             + G GI  + +++++++     LV I+ +V +  S  VY  Y    +   ++  F +F
Sbjct: 229 LALRGEGIVRMSNFLIREDLAAGRLVPILTEVTVEASLPVYAVYYRNSQLAARITCFLDF 288

Query: 290 I 290
           +
Sbjct: 289 M 289


>gi|307545492|ref|YP_003897971.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307217516|emb|CBV42786.1| transcriptional regulator, LysR-family [Halomonas elongata DSM
           2581]
          Length = 297

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 140/298 (46%), Gaps = 23/298 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  +  SGSFT AA  L + +++ +  I  +E+ +G++L  R  R +  T +G 
Sbjct: 4   FEAMTLFVRIVESGSFTKAANGLDIPRATATLAIQRMESRLGVRLLERTTRQVRPTPEGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H     +  +LE  +  L+  +  P G LR+       + ++   ++EF   YP +++
Sbjct: 64  AFHERCVRLLAELEDAEAALKPVADNPDGVLRVEMHGAQARLIVLPRIQEFHRRYPRLEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ +D+  +  DCA+R   P   SSL+ RKL  +     A+P YL++   P    
Sbjct: 124 ILTSGDRFVDLVGEGVDCALRSGAP-ADSSLVARKLAEMPQTICASPAYLESAGYPRHPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP---IGEPRISCLQVNSYLSI------MQYC 235
           EL KH ++ F          F+    VD     I + R    +V  ++++      ++  
Sbjct: 183 ELHKHQVVNF----------FSGNNAVDSTLDVIVDGRSRAFEVGGWITVNDASTYVESA 232

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G G+  LP + V    +   LV ++ +   P+  ++  YP+  + + +++ F ++I
Sbjct: 233 RQGCGMIQLPRFHVAPLIERGELVEVLPEWPKPTLPLHAVYPQRRQLSPRVRVFLDWI 290


>gi|296156373|ref|ZP_06839211.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295892972|gb|EFG72752.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 303

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 133/295 (45%), Gaps = 16/295 (5%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+    F  +  + SF+ AAE L L +SS++  I  LE E+G  L  R  R L+LT+ 
Sbjct: 2   DKLQAMTTFVRIVEAQSFSKAAETLSLPRSSVTTTIKSLERELGTTLLRRSTRTLSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   + EL   +  P G++R      +G+ ++   L EF   +P I
Sbjct: 62  GERYYASCRAILAEIARVEGELSADTASPRGRVRADMPGVIGRAMVLPRLHEFAQRFPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++  D+  D  DC IR  + +  SSL  R+L  +     A+P YL    EP +
Sbjct: 122 ELVLGLSDRPADLIYDGIDCVIRTGE-LADSSLTARRLGELSWITCASPRYLTAHGEPAT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
           +  L  H+ + +  +        +W   V    GE     +Q    VN   + +Q  + G
Sbjct: 181 VGALTDHHAVNY--ISNATGRPLDWRFHVQ---GEDLTIAMQSRFAVNETEAYLQCGLEG 235

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  L +++      +  L  ++    + +  V   YP     +G  + F ++I
Sbjct: 236 LGLIQLSEFVALPYLKSGRLKEVLATARSSAVPVSIVYPHGRNASGATRTFVDWI 290


>gi|326317472|ref|YP_004235144.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374308|gb|ADX46577.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 311

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 17/295 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR++S LE ++G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVVERGGFAAAGRALGIPKSRLSRRVSDLEAQLGVRLLQRTTRKLSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    V    +     + E   +P G +R++  + L Q +L   +  FL  +P ++
Sbjct: 63  ESYLRHCQAVREAAQAASDAVAEVQTEPRGTVRVSCPVTLAQTVLGELMPIFLERHPQVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +D+  +  D A+R+R  +  S S++ ++L        A+P  L     P S
Sbjct: 123 VEMQVTNRAVDLVEEGVDVALRVRPNLDDSGSMVVKRLDDARQVLVASPALLARQGTPTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
           +  L + + +         M+  + L  V  P G+  +  L      +  L++    + G
Sbjct: 183 VAGLARLDSMAM-----SAMDGRSSLRLVG-PEGQEEVVQLTPRYVADDLLTLKFAALAG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +G+  LPDY+ +       LVRI+    TP   V+  +P      G   A R F+
Sbjct: 237 TGLCWLPDYMCQAELGEGRLVRILPGWSTPRGVVHAVFP---SRRGLAPAVRRFL 288


>gi|331682823|ref|ZP_08383442.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
 gi|331080454|gb|EGI51633.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
          Length = 299

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 128/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+  LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLVYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|206579208|ref|YP_002237614.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206568266|gb|ACI10042.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 285

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 132/277 (47%), Gaps = 21/277 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  L  F  +AR GS + AA++L++  +++SR+I+ LE  +G++L  R  R  +LTEQ
Sbjct: 1   MDWQDLNCFLALARKGSMSAAAKELNVDHATVSRRITALEASLGLRLTERLPRQTSLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +  V +E+    +   I+ +  S+ P+  +RI+ +  +   L+   +  F   +PDI
Sbjct: 61  GKVIASVANEMNRIADRIHIQAKALSLSPAVSIRISASPAVAAQLIAPAIAGFTQNHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L   +    +S   AD A+RL +P     LI R++ T+H   YA+  +         
Sbjct: 121 ALSLAGVSHHAQLSKGEADIAVRLTRPDDPGLLI-RRIGTMHFGLYASHSW--------- 170

Query: 183 IQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            QE+   N +       + +E     NWL +    + E R    + +  ++  Q    G 
Sbjct: 171 -QEIPPENWVFIA--YERSLEHITQQNWLES----LLEGRRIIFRASDLMAQQQAARSGL 223

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPE 275
           G+  LP ++   + +L+++  +   P   ++   YPE
Sbjct: 224 GLVTLPCFMGDADSSLLKLTVESRPPVRDIWLVAYPE 260


>gi|126442519|ref|YP_001061616.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126457092|ref|YP_001074555.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134282920|ref|ZP_01769622.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167905434|ref|ZP_02492639.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167913727|ref|ZP_02500818.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|217424464|ref|ZP_03455962.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226199179|ref|ZP_03794740.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237509820|ref|ZP_04522535.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242314044|ref|ZP_04813061.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254187185|ref|ZP_04893699.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198985|ref|ZP_04905403.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254263712|ref|ZP_04954577.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254296821|ref|ZP_04964275.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|126222010|gb|ABN85515.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126230860|gb|ABN94273.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|134245568|gb|EBA45660.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|157806661|gb|EDO83831.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157934867|gb|EDO90537.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169657157|gb|EDS88551.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|217392388|gb|EEC32412.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225928778|gb|EEH24804.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002025|gb|EEP51449.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242137283|gb|EES23686.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254214714|gb|EET04099.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 330

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 138/298 (46%), Gaps = 27/298 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE G  
Sbjct: 16  NDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTEAGQL 75

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  + +     +Q+    P G +R++  + + Q +L   L EFL  YP++++Q
Sbjct: 76  FYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLPEFLRRYPEVRVQ 135

Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + + N+ ID+  D  D A+R+R +P QS++++ R L         AP  L+    PL+  
Sbjct: 136 IRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVGAPSLLQQNAPPLAPD 195

Query: 185 ELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235
           +L   + +    GD        FN +A    P G       EPR+    +   ++I +  
Sbjct: 196 DLAGFDTLDTPSGD----GRHVFNLIA----PDGTRHTHEHEPRLVTADL---MTIREAV 244

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 245 LDGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 299


>gi|325523503|gb|EGD01820.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 297

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 128/274 (46%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L VF  VAR  SFT AA +L +SQS++S  I  LE  +G++L  R  R ++ T+ G
Sbjct: 5   NFNDLLVFLAVARERSFTRAAAKLGVSQSALSHTIRDLEARLGVRLLTRTTRSVSTTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    ++E     L +   KP+G +RI  T     +++   L   L  YPDI+
Sbjct: 65  EELLNTAAPRIEEIEAKLASLSDFRDKPAGVVRITATDHAIDSIVWPKLTNVLREYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D    +I  D  D  IR    +    +  R    I M    AP YL+    P S 
Sbjct: 125 LELTVDYGLANIVEDRYDIGIRFGDQVAKDMIAVRISPDIPMAVVGAPSYLEGKSLPKSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H+ +T      K +  + W L    R I       L  N+   ++Q  V G G+A
Sbjct: 185 EDLLNHDCVTLRLTTTKGV--YAWELKKGKREIQARVNGQLTFNTQQQMLQAAVDGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            LP+  V+   D   L  +++D   P+F  Y  Y
Sbjct: 243 FLPEDAVRPYLDRGELQSVLKD-WCPAFPGYHAY 275


>gi|251789461|ref|YP_003004182.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538082|gb|ACT06703.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 296

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 15/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GS T AA +L +S+S  +R I+ LE  +G++L +R  R L LT  G+ + 
Sbjct: 7   MQVFVAVADLGSLTAAANKLDMSRSMATRYIAALEHWLGVRLLHRSTRSLGLTSVGNDML 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E         + +P G +R+A+++  GQ+ L   L  +   YP    +LI
Sbjct: 67  VRCRQIVVLSEDMAALSGGGNTEPHGVIRVASSVSFGQSYLSQALGRYRTRYPHTTTELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ I +  +  D A+ +       +LI + L        A P YL +   P++  +L 
Sbjct: 127 LTDRTIKLVEERIDLAVEVTNS-PDHNLIAKPLGRCASVVCATPDYLAHHAPPVTPNDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISC---LQVNSYLSIMQYCVLGSGIAL 243
           +HN +    L         W  T  R  GE  R+     +  N  L ++     G GIA 
Sbjct: 186 RHNCLNHTRL------GREWRFT-HRETGERHRVMVSGRVVANDTLVLLNAARAGEGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+++V+   D   LV ++ D  T +  +Y CY         L+   +F+
Sbjct: 239 LPEFVVRAGLDAGELVPLLGDYQTQALGIYACYMSRRHMPATLRTLLDFL 288


>gi|188532825|ref|YP_001906622.1| LysR-family transcriptional activator [Erwinia tasmaniensis Et1/99]
 gi|188027867|emb|CAO95724.1| LysR-family transcriptional activator [Erwinia tasmaniensis Et1/99]
          Length = 292

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 133/285 (46%), Gaps = 19/285 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F +VA  GSFT AA +  L +SS+S++IS LE  +G++L  R  R L LT  G +    
Sbjct: 10  LFALVAECGSFTAAAARAGLPKSSVSQRISQLEHALGLRLINRTTRQLNLTFAGERYLVH 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+    E   + ++     PSG+LRI +   +G  LL     +F   +PD+ +++ + 
Sbjct: 70  CQEMLQASERAGLVIERLRDNPSGRLRITSPAGIGATLLARVNTDFQQQFPDVTLEVSIS 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+  D  D A+R  +P Q  SLI R++        A+P YL + +     ++L +H
Sbjct: 130 DEMCDLVQDGFDVALRTGRP-QDLSLIGRRIGYCQRLLVASPDYLADYQTLAHPRQLSEH 188

Query: 190 NLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALL 244
             I        L+ +  E + WL           +    +   L   + C L S GI LL
Sbjct: 189 RCIAHRAWNEWLLKRNEEYYRWL-----------LPPTHMTDNLVYARECALSSGGITLL 237

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P ++  +   LV+++ +       ++  YP    N+  L  F +F
Sbjct: 238 PRFLSCE--KLVQVLPEWEVEGNELWLVYPSRKLNSPALSRFVDF 280


>gi|163854972|ref|YP_001629270.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258700|emb|CAP40999.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 307

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 142/299 (47%), Gaps = 22/299 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  +   G F+ A+  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLFYFSQIVEHGGFSAASRALDIPKSRLSRRISQLEATLGVRLLQRTTRRLRLTLAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+       +  +++   +P G + ++  I + Q +L   L EFL  +P + 
Sbjct: 63  ERYLHYCREMTASARAAEDAMRQLQAQPCGPVVVSCPIAIAQQMLAPLLPEFLDAWPSVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q++  N+ +D+  +  D A+R+R  + + + L+ + L        A+P YL+    P +
Sbjct: 123 VQVLATNRRVDLIREGVDLALRVRTRLDTDAELVVKHLGMASSSIVASPAYLQRHGTPQT 182

Query: 183 IQELDKHNLITFGDLIPKC--------MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            Q+L  H  ++F +  P+          +D   + T+      P++ C   N ++ + + 
Sbjct: 183 PQDLAAHTTLSFSE--PQSEVRWPLRNRQDEELVVTL-----RPQLCC---NDFIVLTEA 232

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V G GI+LLP     +      LVRI+ D ++PS  V+  YP        ++A  +FI
Sbjct: 233 AVRGRGISLLPTVATYEEVRRGQLVRILPDWLSPSGIVHCIYPSRRGMAPAVRALLDFI 291


>gi|120612681|ref|YP_972359.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120591145|gb|ABM34585.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 330

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 132/276 (47%), Gaps = 23/276 (8%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  VAR  +F  AAE+L L+QS++SRQI  LE EVG+ LF RH R + LT  G++L R
Sbjct: 21  RAFLAVARHLNFRAAAEELSLTQSAVSRQIQALEDEVGVPLFLRHTRAVELTSAGAQLQR 80

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +    +L+ +   +++++ + S  + I T        L   ++EF    PDI I+  +
Sbjct: 81  AVAPALERLDASVRLVRQTAGRKS--VAITTWASFASMWLIPRMEEFQRDNPDIDIR--I 136

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSL-IQRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184
           D  D+ + ++ AD  + LR  +  S L   ++L    +   A+P  LK+    R P  + 
Sbjct: 137 DASDVSVDLETADVDLALRYAVPGSQLHGAQRLFGEQLAVVASPWLLKSGPPIRRPADVA 196

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLG 238
           +     LI  GD     M    WL T  R   +   S LQ   +L       I+Q  + G
Sbjct: 197 QF---TLIEAGDA--HRMAYLEWL-TWRRWFEQNGQSKLQPKRWLYFNYAHQIVQAALTG 250

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYF 271
            G+AL    ++ D   + +LV ++      S  VY+
Sbjct: 251 QGLALARMPLIADSLASGDLVEVLPGYRLDSPLVYW 286


>gi|326387765|ref|ZP_08209371.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207811|gb|EGD58622.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 295

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 131/293 (44%), Gaps = 28/293 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ L  F VV R+GS + AA  L ++Q ++ R++  LE  VG  LF R   GLT T+  
Sbjct: 3   DWEDLHAFSVVLRTGSLSAAARFLGVTQPTMRRRLDALEQSVGAPLFVRSQTGLTPTDAA 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R T  +    E              G +RI  +  +G  +L   L      +P + 
Sbjct: 63  RELGRHTGVMAVAAEAFSRAASADGTAVEGVVRITASDVVGAEVLPAVLVPLRAAHPGLI 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N+  D++   AD A+R+ +P Q ++LI R++ T+ +  +A   YL+    P S 
Sbjct: 123 VELDLANRTQDLTRQEADIAVRMVRPAQ-AALIARRIGTVPLGLFAHRSYLRIAGVPASH 181

Query: 184 QELDKHNLI------TFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
            +L  H LI      T+ D +         ++F+                ++ +S L+ +
Sbjct: 182 ADLAHHTLIGPDRETTYLDFVAGHGLHLRRDNFS----------------IRTDSQLAQL 225

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
                G GI +    + + + +LV +M  V  P    +    E L+   +++A
Sbjct: 226 SAIRSGLGIGICQVALGRRDRDLVHLMPQVFRPDMETWVVMHEDLRRVRRIRA 278


>gi|302878705|ref|YP_003847269.1| transcriptional regulator, LysR family [Gallionella
           capsiferriformans ES-2]
 gi|302581494|gb|ADL55505.1| transcriptional regulator, LysR family [Gallionella
           capsiferriformans ES-2]
          Length = 300

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 103/191 (53%), Gaps = 3/191 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA+ GSFT AA+ L +S++  +R +S LE  +  +L  R  R L+LTE G +  
Sbjct: 7   MRVFVEVAQRGSFTAAADSLDISRAMATRYVSELEQWLNARLLQRSTRRLSLTEAGERCL 66

Query: 68  RVTSEVYH-KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               ++     E T +  +++S  P G LRI T++  G   L   + ++L LYP + + +
Sbjct: 67  LQCRQILELSGEMTDVSGRDNSA-PKGPLRITTSMSFGMAHLAAAVTDYLKLYPQVSVDM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++ +++  +  D AIR+   +   +L+ R+L        A+P YL+    P S  +L
Sbjct: 126 LMVDRSVNLIEERIDLAIRISGELD-PNLVTRRLAPCRSVVCASPDYLRRYGTPASPADL 184

Query: 187 DKHNLITFGDL 197
            +HN +T+ + 
Sbjct: 185 TRHNCLTYSNF 195


>gi|154247174|ref|YP_001418132.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161259|gb|ABS68475.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 296

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 17/289 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  +AR+G    A   L L  +++ R+++ LE EVG  L  R  R   +TEQ
Sbjct: 1   MDWDDLRIFLQLARTGRMAGAGRALGLDDTTVGRRVARLEKEVGAPLVARAGRRTVITEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL +   E+   +    + L E+ ++ +G++RI     LG   L   L       P +
Sbjct: 61  GQKLAQAAEEMESIVLRKIVGLGEADMQVAGRVRIGAPEGLGVGYLAARLAALSAENPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +L+   +   ++    D AI L +PI     + +KL    +  Y    Y      P +
Sbjct: 121 ETELVALPRAYSLASREVDIAITLDRPIAGQVSV-KKLTDYTLELYGTQAYFDRRGRPGT 179

Query: 183 IQELDKHNLITFGDLIPKCM----EDFNWL-ATVD-RPIGEPRISCLQVNSYLSIMQYCV 236
             EL  H    F   IP+ +     DF+ L A V+  P+        QVN+ LS      
Sbjct: 180 AAELQGH---VFAGYIPELLFTRALDFSTLEAGVEVTPVIRSTSVIAQVNAVLS------ 230

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            G+ + +LP ++   +P+L  ++E     + + +    + LK+  +++A
Sbjct: 231 -GAALGVLPAFLAAAHPDLEVLLEGAFRLTRSYWVSVHDDLKHLNRVRA 278


>gi|110636066|ref|YP_676274.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110287050|gb|ABG65109.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 285

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 8/237 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ +S+SR ++ LE  +G +L  R +R LTLTE G       + V  +L   +  + E  
Sbjct: 1   MAPASVSRYVNALEDRLGTRLLNRTSRSLTLTEAGEAYLATAASVIEQLAAAETRVAELG 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             PSG LR+ + I +G   +   + +FL  YPDI + L+L N++I+++    D  IRL K
Sbjct: 61  KTPSGTLRVHSRIFVGSQFIVPYVPQFLKRYPDINLVLMLSNEEINLAESNVDLDIRLGK 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            +  S LI  KL        A+P YL       S  +L +H+ + +   I   +  F   
Sbjct: 121 -LNDSDLIVSKLAETERCVVASPKYLDAAPTITSPADLSQHSCLVYTKHIGSSVWSF--- 176

Query: 209 ATVDRPIGEPRISCLQVNSY-LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
              D    + R+S      Y  S+    V G G+ALLP++ V ++     LVR+  D
Sbjct: 177 INKDGLRSDVRVSGRYTTDYGPSLKTLAVAGFGLALLPEWSVFEDVAAGRLVRLFAD 233


>gi|325121809|gb|ADY81332.1| carbonate dehydratase [Acinetobacter calcoaceticus PHEA-2]
          Length = 313

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 129/293 (44%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+   
Sbjct: 13  MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ ++  
Sbjct: 73  ERCRQVISMVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+     D ++ L + +  S  + R++ TI     A+P YL+    P S ++L 
Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPEDLK 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P    D++ L T            L  ++   ++       GIALLP +
Sbjct: 193 DHACLRLVN--PSITPDWHLLNTSGESYQIDIGGQLIADNPELLLDVVQQDMGIALLPMF 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              D   N  L  I+ +  +P   VY   P            R+FI  K R W
Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292


>gi|312797607|ref|YP_004030529.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312169382|emb|CBW76385.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 402

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 136/287 (47%), Gaps = 15/287 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  + +S + ++R ++ LE+ +G +L  R  R L+LTE G    
Sbjct: 24  MRVFVKVADLGSFAKAASMMDMSNAVVTRHVADLESRLGTRLLNRTTRSLSLTESGQVYL 83

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  +  +   + +P G LRI   +  G + L   L  +   +P +   + 
Sbjct: 84  ERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLHSYAQRFPQVIPNVT 143

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++++D+  +  D  + + + ++S+S++ R+L T  +   A P Y+     P   ++L 
Sbjct: 144 LVDREVDMVEEGFDVGVVIARNVRSASVVMRRLTTGCITVCATPEYIAKHGVPQRPEDLL 203

Query: 188 KHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H+ ++     +GD   +     +      RP      + +  N+   + Q  +LG+GIA
Sbjct: 204 EHHCLSLPADYWGD--ERVFTGPDGQEVRVRP-----TNVMIANNTEMLRQLALLGNGIA 256

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LLP Y++  +     L+R++     P   +   YP       K++ F
Sbjct: 257 LLPSYLIGRDMAEGRLLRLLPQYHLPRVDINIAYPSRHYLPAKVRTF 303


>gi|259909683|ref|YP_002650039.1| LysR family transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|224965305|emb|CAX56837.1| LysR family transcriptional regulator [Erwinia pyrifoliae Ep1/96]
          Length = 284

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 126/286 (44%), Gaps = 6/286 (2%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
           ++++  SFT AA +L +SQS++S  I GLE  +  +L  R  R +  TE G +L +    
Sbjct: 1   MISKEKSFTRAAAKLGVSQSALSHSIRGLEERLKTRLLTRTTRSVAATEAGERLIKSVGP 60

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +   +E   + L E+    SG +RI        + L   LK FL  YPD+ ++L +DN  
Sbjct: 61  MIDDIEKALLHLTENVGSISGNIRITAGEHALSSTLWPLLKPFLQAYPDVNVELSVDNTL 120

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
            DI     D  +RL + I+   +  R      M A A+P YL     P +  EL  H  I
Sbjct: 121 TDIVSGRFDAGVRLGESIEKDMVAVRIGPDWRMSAVASPEYLAQYGIPETPYELQNHRCI 180

Query: 193 TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK- 250
                +P     ++W  +   + I       L  N+  S +   + G GIA +P+  V+ 
Sbjct: 181 NM--RLPTLGGLYSWEFSKEGKGIKVKVEGQLIFNNLPSRIDAALSGMGIAYVPEDSVQQ 238

Query: 251 --DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             ++  L  ++E+   P    Y  YP   ++T         + LK 
Sbjct: 239 YVEDGRLQHLLEEWCEPFNGYYLYYPSRKQHTAAFSKLIEAVRLKG 284


>gi|171060007|ref|YP_001792356.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170777452|gb|ACB35591.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 314

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 125/257 (48%), Gaps = 25/257 (9%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +    V+   GS+T AA++L +S++++S+ I+ LE   G+ L  R  R + LTE G 
Sbjct: 10  WSHMHWLTVLGDLGSYTAAAQRLGVSKAAMSQHIADLERAAGVPLVSRTTRSVRLTEAGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T   + ++E     +++ +  P G LR+   + LG+  +   L +FL  +P+++I
Sbjct: 70  QLADATRGAFEQIERGLAGVKDLATTPRGLLRVTAPVALGRQQIVPRLPDFLRAHPEVRI 129

Query: 125 QLILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +L+L+++ + ++ +  D AIR   R P    + +   L T      A+P YL+    P  
Sbjct: 130 ELVLNDQVLSLAQEGFDLAIRHTARPP---ETHVAWTLTTTRSVLVASPDYLQRRGRPQH 186

Query: 183 IQEL----DKHNLITFGDLIPKCMEDFNW--------LATVDRPIGEPRISCLQVNSYLS 230
             EL     +H+ + +    P+  E   W        LA V   +  P    L  N+   
Sbjct: 187 PAELATERGQHDCLHY----PRPGETPTWQFQPRQAALAPVTVAVRGP----LSANNSEV 238

Query: 231 IMQYCVLGSGIALLPDY 247
           + +  + G GIALLPD+
Sbjct: 239 LREAAIDGLGIALLPDF 255


>gi|319791444|ref|YP_004153084.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593907|gb|ADU34973.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 301

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 134/300 (44%), Gaps = 28/300 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V    AR G+ T AA  L ++ ++ S  +  LET++G +LF R  R + LT QG  L 
Sbjct: 9   LQVLVHTARGGTLTAAAHALGITPAAASATLKRLETQLGARLFERSTRAMRLTPQGQTLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  L+  +  +     +  G LR+A   DL ++ L     EFL L+  +Q+ L 
Sbjct: 69  DYAVRAFELLDEGESLVTADRGELVGTLRVAAPSDLTRSTLLPWFDEFLALHSGVQLSLS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  D A+R    +  S L+ R     +    A+P YL     P + Q+L 
Sbjct: 129 VGDRPLDVMRDEVDVALRY-GALADSRLVARPFAMTNPLLTASPEYLSRHAAPKTPQDLV 187

Query: 188 KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCV 236
            HN + F        + +  ++  W             + ++VN   S+       ++ V
Sbjct: 188 HHNCLIFNRGGRRHRVWRFAQNGQW-------------TEVRVNGNRSVDDASLAREWAV 234

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI L     V+D+     LV++M D  T  + ++   P       +++AF +F+ LK
Sbjct: 235 AGYGITLKSALDVRDDVRSGRLVQLMADWQTEPYPLHALLPSGRFVPARVRAFVDFLALK 294


>gi|237808258|ref|YP_002892698.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500519|gb|ACQ93112.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 298

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 132/273 (48%), Gaps = 10/273 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F VVA+  SFT AA +L +SQS++S  I GLE  + ++L  R  R ++LTE G +
Sbjct: 7   NDLLSFLVVAQESSFTKAAAKLGVSQSALSHSIRGLEERLNLRLLNRTTRSVSLTEAGDR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +  S    ++E     L E    PSG +RI+      QN+L   L++FL+ YPDI+++
Sbjct: 67  LRQTLSPRIEEIEEELDALNEEQNGPSGSIRISAPEYAAQNILWPVLEKFLVQYPDIRVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + ++N   DI  +  D  IRL + +    +  R    + M     P Y  N   PL  ++
Sbjct: 127 VNIENSFTDIVAERYDAGIRLGEQVAKDMIAVRISPDLKMAVVGTPSYFSNREIPLIPED 186

Query: 186 LDKHNLITFGDLIPKCMED-FNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I   +L P      + W     +R I       L  N+    ++  + G G++ 
Sbjct: 187 LHQHRCI---NLRPSTAGGVYAWEFEKENRNINVRGEGQLIFNTTTQSLKASLAGFGVSY 243

Query: 244 LPDYIVKD---NPNLVRIMEDVIT--PSFTVYF 271
            P+ ++K       L+ ++ED     P F +Y+
Sbjct: 244 APENLIKGYVKEGKLISVLEDWCPTFPGFHLYY 276


>gi|163792499|ref|ZP_02186476.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
 gi|159182204|gb|EDP66713.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
          Length = 314

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 1/199 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW+++R F V A  GSF+ AA  L ++Q ++ RQ+  LE E+G+ LF R  RGLTLT
Sbjct: 10  VKFDWNRVRAFLVTAEEGSFSAAARALGMAQPTLGRQVGALEEELGVVLFERVGRGLTLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L      +     +  +     S    G +RI  T      +L   + +     P
Sbjct: 70  QSGLELVEHARAMADAAASVSLTASGQSQAIEGTVRITATEVTSAFILPAIVTKLRSAQP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++++  N   D+    AD AIR  +P     LI RKL+      YA+  YL+   E 
Sbjct: 130 AIEVEILATNAVRDLRRREADIAIRAVRPTD-PDLIARKLMIDTAELYASEAYLRRVGEL 188

Query: 181 LSIQELDKHNLITFGDLIP 199
            S ++L     + F +  P
Sbjct: 189 SSPEKLSCAEFVGFNENEP 207


>gi|116255385|ref|YP_771218.1| LysR family transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115260033|emb|CAK03131.1| putative LysR family transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 297

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 131/283 (46%), Gaps = 6/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +VAR  SFT AA ++ +SQS++S  I  LE  +G++L  R  R ++LTE G +L 
Sbjct: 9   LNAFALVARERSFTRAAAKVGVSQSALSHTIRQLEARLGVRLLTRTTRAVSLTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +++     L     KP+G +R++       ++L   L++FL  YPDI+++LI
Sbjct: 69  DGIGPHLDEIDAQVEALSALRDKPAGTIRLSAADYAITHVLWPKLRKFLPQYPDIKVELI 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN   DI  +  D  +R+ + +    +  R      +    +P Y K    P   ++L 
Sbjct: 129 LDNGLTDIVNERYDAGVRMGEHLAKDMISARIGPDFSLAVVGSPSYFKEHGIPSHPKDLV 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            H  I F   +P     + W    +    + R+   L  N+  + ++  + G G+A +P 
Sbjct: 189 GHTCINF--RLPSSGGLYVWEFEENGQEIKIRVDGQLAFNNIFNALEAALDGFGMAYIPL 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            IV+   +   L  ++++   P    Y  YP   +++    A 
Sbjct: 247 EIVQPLVNERKLEHVLQEFSPPWDGYYLYYPSRRQSSPAFAAL 289


>gi|82776694|ref|YP_403043.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|309788986|ref|ZP_07683581.1| uncharacterized HTH-type transcriptional regulator ycjZ [Shigella
           dysenteriae 1617]
 gi|81240842|gb|ABB61552.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|308923257|gb|EFP68769.1| uncharacterized HTH-type transcriptional regulator ycjZ [Shigella
           dysenteriae 1617]
          Length = 299

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SILGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDACVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|42524310|ref|NP_969690.1| LysR family transcriptional regulator [Bdellovibrio bacteriovorus
           HD100]
 gi|39576519|emb|CAE80683.1| transcriptional regulator, LysR family [Bdellovibrio bacteriovorus
           HD100]
          Length = 296

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 137/295 (46%), Gaps = 10/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA++GSFT AA+ L++S+  ++R +  LE  VG  L  R  R ++LT  G    
Sbjct: 7   IQVFLEVAKTGSFTKAADNLNMSRPMVTRYVGILEDWVGTSLLQRTTRNVSLTSSGEMYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++       ++  + +  +P G +R+A+++    +  +  +  F+  YP I I  +
Sbjct: 67  EKCRQIQDIAFDIEVNSKSALDEPKGVIRVASSVSFAMSQYRELIAPFMERYPQISIDFV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++     D AIR+   +    ++ ++L   H    A P YLK    P  +++L 
Sbjct: 127 VTDRQVNLIESKVDFAIRITNSL-DPGIVSKQLGVCHSCLVATPKYLKAKGTPRKVEDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KH L+         +     L   DR       S    N  L +++      GI ++P Y
Sbjct: 186 KHRLMAHDHFKNSKLS----LRKGDRQEELSFTSAFSSNETLLLLEAATQDLGITMMPRY 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDW 297
           +V+D   +  LV ++ D   P F ++  +        +++ F +++   +K ++W
Sbjct: 242 LVQDHLKSKRLVEVLSDWSLPEFGLHIVFTNRKFIAPQVRLFIDYLSAEIKKQNW 296


>gi|158423033|ref|YP_001524325.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158329922|dbj|BAF87407.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 304

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF   A   S + AAE L +S +++SR +S LE  +  +L  R+ R L LTE G + 
Sbjct: 6   QIEVFLKTAELRSLSRAAEALGMSNAAVSRHLSALEERLSARLVERNTRRLWLTEAGQEF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++ +  +  +L   +  + E ++ P G LR+ +++      L   L E   LYP + + +
Sbjct: 66  YQRSGALLAELAEAEEAVNEHTLSPQGLLRVTSSLSFATIYLAPMLPELRRLYPKLSVHI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+ +D      D AIR R     ++++ R+L  +     A+P YL+    P    +L
Sbjct: 126 AVANRYLDFIEAGIDVAIRTRLHEPDTNIVVRRLGRMRRVLAASPAYLEERGRPKEPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +H+++ +        + F+   +        RI + L  N    I Q  + G GI + P
Sbjct: 186 ARHDMLVYN----LAQDPFSLRLSKGEAERTVRITAALDCNDGQVIRQAAIAGLGILVQP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            YIV+++     LV ++ D   P  T+   Y    +   K++ F +F+
Sbjct: 242 LYIVQEDLEAGRLVPVLLDWQLPMLTMNIAYQNRERLPAKIRVFTDFL 289


>gi|152985296|ref|YP_001348050.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960454|gb|ABR82479.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 301

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA +G F  AA Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    
Sbjct: 7   LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGVVYR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   LE     L      PSG LR++  + L    L   +  FL  YPD++++L+
Sbjct: 67  QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+  +  D A+R    +  S L+ R L+ +     AAP YL+   +PL  + L 
Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLVLEHVLCAAPAYLRQHGQPLRPEALR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F            W    D   I  P     +V+S L++    + G G++L+P 
Sbjct: 187 EHECIRFS----LSGHADRWTFRKDHECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       LV ++ D       ++  YP + +  GK + F +F+
Sbjct: 243 LYVQAELAEGRLVELLADWKADETAIHAVYP-SRQLAGKTRVFLDFL 288


>gi|152984328|ref|YP_001346809.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959486|gb|ABR81511.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 301

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 124/259 (47%), Gaps = 7/259 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L  + ++++R I  +E ++G +LF +H  G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ + S+ P G++RI  T  LG   L   L + +  YP +
Sbjct: 62  GQALLKHAEAMENTALLAQEEMSQ-SISPLGQIRIGVTEGLGSVFLAPRLAQLMRQYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I+   AD AI L +P  +  +I R L    +  +A+P YL+       
Sbjct: 121 EVELVSVPRFVSITNREADIAISLDRP-GADLVITRLLTRYRLALFASPAYLEQAPPLRD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  I + D +    E     +    P         +  S ++  Q    G G+A
Sbjct: 180 RDDLGRHQWIGYVDDLLFSQELMFHHSFCRHP-----QVVFRSTSVVAQQQAAQAGIGLA 234

Query: 243 LLPDYIVKDNPNLVRIMED 261
           +LP ++   +P LV ++ +
Sbjct: 235 ILPHFMGSRDPLLVPVLPE 253


>gi|73539475|ref|YP_299842.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122812|gb|AAZ64998.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 307

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 131/284 (46%), Gaps = 8/284 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++ + GS    A +L+L+  ++SR++S LE  +G++L  R  R ++LT +G   
Sbjct: 6   QLAFFCLLVKQGSLAATARELNLTPPAVSRRLSQLEARLGVRLLNRTTRRISLTNEGEVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   ++  +  +  S   P G LR+   +  G++ +   +  F   YPD+++QL
Sbjct: 66  FANAMRILGDIDEMERLVSSSREAPKGLLRVNAPLGFGRSYIGPAISGFSKTYPDVEVQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ I +  +  D +IR    +  S LI +++        A+P YL++  EPL   +L
Sbjct: 126 QLTDRPISLPDEAIDVSIRF-GDLPDSRLIAKRIAPNRRLLCASPAYLRSAGEPLLPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  I    L        NW  T  +     ++   L  N     + + + G GI +  
Sbjct: 185 TQHACIV---LRQNETAYGNWRLTRGKQTETIKVHGKLSTNDGEVALNWALEGHGILMRA 241

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++ V     +  LV+++ D  TP   +Y  Y E L  + K+  F
Sbjct: 242 EWDVAKFLRSGRLVQVLTDYATPPADIYAVYLERLNQSAKVSYF 285


>gi|254451804|ref|ZP_05065241.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198266210|gb|EDY90480.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 301

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 18/287 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++ F +VA  GS + AA +L  SQ ++ RQI  LE ++   LF R ARGL LT+ G
Sbjct: 9   DWSLIQAFLMVAEEGSLSGAARKLGASQPTLGRQIKTLEHQLSASLFTRQARGLELTQTG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +   +    +     S + SG +RI  ++      L   + +  LL P I 
Sbjct: 69  AALVAPARAMRDAMGQITLTAAGQSARMSGTVRITASVMTSMYHLPDIIAKIRLLEPAIS 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+++  +   ++    AD A+R+ +P Q   L+ + +  I +   A+  YL         
Sbjct: 129 IEVVASDDTRNLLYREADFAVRMYRPTQ-LDLVTQHIGNIPLTICASKSYLARMGPLQGA 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP------RISCLQVNSYLSIMQYCVL 237
            +L  H+ + + D  P  ++ F       R IG        ++ C    +Y ++++    
Sbjct: 188 ADLMHHDFVGY-DTNPALIDGF-------RDIGIEVTRDFFKVRCDDHATYWNLVRA--- 236

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G GI      I KD+ +++ I   V  PS  V+    EA+++T +++
Sbjct: 237 GCGIGFAQGSIAKDDLDVMAIDAGVAIPSLPVWLVAHEAMRHTPRIR 283


>gi|262167200|ref|ZP_06034912.1| putative transcriptional regulator LysR family [Vibrio cholerae
           RC27]
 gi|262189930|ref|ZP_06048245.1| putative transcriptional regulator LysR family [Vibrio cholerae CT
           5369-93]
 gi|262024344|gb|EEY43033.1| putative transcriptional regulator LysR family [Vibrio cholerae
           RC27]
 gi|262034189|gb|EEY52614.1| putative transcriptional regulator LysR family [Vibrio cholerae CT
           5369-93]
 gi|327483760|gb|AEA78167.1| Cyn operon transcriptional activator [Vibrio cholerae LMA3894-4]
          Length = 245

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 120/246 (48%), Gaps = 9/246 (3%)

Query: 49  LFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLL 108
           +  RHAR LTLTE G + ++  S +  +L +   E+ +     SG++RI+   +L + ++
Sbjct: 1   MLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMM 60

Query: 109 QGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168
                 F+  YPDI I+L++ N+  D+     D   R+  P + SSLI RK+  +     
Sbjct: 61  MPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRV-GPQRDSSLIARKIGEVKDILV 119

Query: 169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
           A+P YL +  +P   +EL +H L+    L+   + +      V+   G  + S L V   
Sbjct: 120 ASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNV--- 176

Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
             +   C  G GI L+PD +++   ++ +LV+++ D  +    +Y  Y        K++ 
Sbjct: 177 --VRSACSEGLGITLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRL 234

Query: 286 FRNFIF 291
           F +F+ 
Sbjct: 235 FIDFVI 240


>gi|298294351|ref|YP_003696290.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296930862|gb|ADH91671.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 316

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 134/286 (46%), Gaps = 7/286 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R+   VA +     AA  + ++ S++ R++  +E  +G  LF RH  G  LT  G 
Sbjct: 10  WDDFRLIKAVADAKGLPAAAAAMGVNHSTVFRRLKQIEEALGAVLFERHRTGYALTPAGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++  + + +  ++     +L      PSG+LR+ T   L  +LL   L  F   YP++++
Sbjct: 70  EMVALANRLDEEITAVGRKLAGREPAPSGELRVTTPDSLLIHLLMPMLATFRERYPEVRL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L N+ +++S   AD A+R        +L+ R++  I    Y          E +S +
Sbjct: 130 DMVLSNQALNLSKRDADVAVRATDN-PPENLVGRRVARIAWALYGRAADFPAPGE-VSPE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ELD HN ++ GD     +     +  V   +  P     ++NS L + +    G GI  +
Sbjct: 188 ELDAHNWVSLGD----SLGSLKTVKFVQENVA-PEKVAYKINSVLGLAEAVEAGIGIGHI 242

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I    P+LVR+       +  ++      L+++ +++AF +F+
Sbjct: 243 PCFIGDARPSLVRLGPANDDYAADLWLLTHPDLRHSPRVRAFLDFL 288


>gi|261863724|gb|ACY01335.1| unknown [Erwinia pyrifoliae]
 gi|283479763|emb|CAY75679.1| Uncharacterized HTH-type transcriptional regulator ycaN [Erwinia
           pyrifoliae DSM 12163]
          Length = 297

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 126/286 (44%), Gaps = 6/286 (2%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
           ++++  SFT AA +L +SQS++S  I GLE  +  +L  R  R +  TE G +L +    
Sbjct: 14  MISKEKSFTRAAAKLGVSQSALSHSIRGLEERLKTRLLTRTTRSVAATEAGERLIKSVGP 73

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +   +E   + L E+    SG +RI        + L   LK FL  YPD+ ++L +DN  
Sbjct: 74  MIDDIEKALLHLTENVGSISGNIRITAGEHALSSTLWPLLKPFLQAYPDVNVELSVDNTL 133

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
            DI     D  +RL + I+   +  R      M A A+P YL     P +  EL  H  I
Sbjct: 134 TDIVSGRFDAGVRLGESIEKDMVAVRIGPDWRMSAVASPEYLAQYGIPETPYELQNHRCI 193

Query: 193 TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK- 250
                +P     ++W  +   + I       L  N+  S +   + G GIA +P+  V+ 
Sbjct: 194 NM--RLPTLGGLYSWEFSKEGKGIKVKVEGQLIFNNLPSRIDAALSGMGIAYVPEDSVQQ 251

Query: 251 --DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             ++  L  ++E+   P    Y  YP   ++T         + LK 
Sbjct: 252 YVEDGRLQHLLEEWCEPFNGYYLYYPSRKQHTAAFSKLIEAVRLKG 297


>gi|206580258|ref|YP_002236581.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569316|gb|ACI11092.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 303

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V   GSFT AA +L LS   + + I+ LE+++  +L  R+ R  +LT+ 
Sbjct: 2   DKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         V  ++   +  ++   + P+G LR++     G +++      FL  +P +
Sbjct: 62  GRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPAV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D+  +  D AIR+ + I    L+ R L    M   AAP YL     P +
Sbjct: 122 RVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPGT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYC 235
            ++L  H           C+    W A        ++  +   R + L+ N   ++ Q  
Sbjct: 181 PEDLADH----------LCLSHTVWTARNEWRLPGIEGEVRWKRDAILRCNDGYALRQAA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + G+G+ + P+ ++ D   + +LVR++E        V+  + +  +   KL  F
Sbjct: 231 IAGAGLLMQPEVLLADALASGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQF 284


>gi|27381292|ref|NP_772821.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27354459|dbj|BAC51446.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 291

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 7/247 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++ SF  AA  L +  S++SR+IS LE E+G++L  R  R + LTE G  
Sbjct: 5   NDMALFVEVVKARSFRGAAATLDMPNSTLSRRISLLEKEIGLRLLNRTTRRVELTEAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      +L E   +PSG LR++  +D     L   + EF   YP I  +
Sbjct: 65  YFERCKRIVDEARLAHEQLGEMLARPSGLLRVSLPVDFANTYLAPLITEFAQHYPGIDFE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D+  +  D AIR+ +   +S +I R L  +H + YA+P YL+   EP    +
Sbjct: 125 FDLTPRRVDLVSEPYDLAIRIGES-AASHMIARPLARLHGNLYASPRYLELNGEPREPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  +    +    +   N   TV+  I         +NS   + +   L  GIA  P
Sbjct: 184 LARHQCLCQTRVSTWTLH--NGTQTVEAEIA----GRFHLNSIGMLRRLATLDMGIAFTP 237

Query: 246 DYIVKDN 252
             IV D 
Sbjct: 238 QEIVADE 244


>gi|115522738|ref|YP_779649.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115516685|gb|ABJ04669.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisA53]
          Length = 307

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 9/249 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF  AA +L +S++++S+ ++ LET +G +LF R +R L LT+ G
Sbjct: 5   DFEALAIFAKVVELRSFAAAAAELAVSKATVSKAVTRLETRLGARLFNRTSRRLALTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +    E  + E    S  P G +R+A  +  G  ++   L  FL  YP+I 
Sbjct: 65  HRLAERAARLLADGELAENEALAQSGTPRGLVRLAVPMTFGVKVIAPLLPAFLDKYPEIS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L   +  +D+  D  D  IR+   +  SSL+ R+L  +  +  A+  YL+    P   
Sbjct: 125 IDLHASDAMVDLIGDGFDAGIRIAS-LPDSSLLARRLCAMPRYTVASKTYLERHGRPTHP 183

Query: 184 QELDKHNLITFGDL-IPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             L +H  + +  L  P      N        RP G      L+VN+  ++M   + G G
Sbjct: 184 MHLAQHRCLGYAYLSTPNAWHYSNAAGEQVAVRPAGP-----LRVNNGEALMPALLAGLG 238

Query: 241 IALLPDYIV 249
           IA LP++I+
Sbjct: 239 IADLPEFII 247


>gi|331685176|ref|ZP_08385762.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
 gi|331077547|gb|EGI48759.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
          Length = 323

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++GI+L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGIQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL  +P I+++L 
Sbjct: 91  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIRT-GALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLA 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V+      R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVRKALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|296156985|ref|ZP_06839822.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295892871|gb|EFG72652.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 363

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 142/298 (47%), Gaps = 24/298 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F   A  GS T AA++L +  S+ SR ++ LE ++ I LF R  RGL+LTE G   +
Sbjct: 66  VRTFVRAAELGSLTRAAQELSIKTSTASRHLNELEADLRIALFNRSTRGLSLTEGGKVFY 125

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              SEV  +L+  +      +  PSG LR+   +  G+  +  ++ EF+  Y DI ++ I
Sbjct: 126 ARVSEVLTQLKDARDATSSLNQSPSGVLRVTLPVSFGRKHVVPHIGEFMDRYRDIDVEAI 185

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +++     D  IR+   +Q SSL+ R+L      A AAP Y K C  P++   L 
Sbjct: 186 FTDDILNLIESQIDLGIRI-GALQDSSLMARRLAPHREVACAAPAYAKACGVPVTPGALK 244

Query: 188 KHNLITFGDLI-------PKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            H  + F   +       P+      W  ATV+          L ++   +++   + G 
Sbjct: 245 DHACLMFSRTVGNVWYVRPRNDTAAEWQKATVN--------GRLTLDDTDALLAVALAGR 296

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPS----FTVYFCYPEALKNTGKLKAFRNFI 290
           GIALLP+++  +   +  L  I+ D    S     +++  YP     + K+++F +F+
Sbjct: 297 GIALLPNWLAYEPLGDGRLTNILPDWEIRSSREEASIWAVYPRKKTVSSKVRSFIDFL 354


>gi|223041455|ref|ZP_03611658.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           202]
 gi|223017713|gb|EEF16120.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           202]
          Length = 299

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 143/296 (48%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+QL +S +  S+ ++ LE  + ++L +R  R +T TE G  
Sbjct: 5   NAISLFCKVIETQSFTQAAQQLDISLAMASKLVAQLEEHLNVRLLHRTTRKITPTEAGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    + ++L+     +   S   +GKL  +  +D G   +  +L +FL  YP I++ 
Sbjct: 65  YYQRCQPILNELKEADDSINNISENLTGKLSFSLPMDFGSRFVAPHLGKFLEAYPHIELH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ +D+  +  D  +R+ + ++ SS++ +K+   H    A+P YL     P SIQ+
Sbjct: 125 LEFNDRRVDVVSEGFDLVLRVGQ-LEDSSIVAKKIAESHQIIVASPEYLATHGTPRSIQD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           LD+H  + + +       DF++     R   + RI     N+  S++Q      GI  +P
Sbjct: 184 LDQHTCLLYEN---HQTWDFSFGEETLRYKAKGRIYS---NNGYSLVQIAKDHQGIINIP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +V        L+ I+E +      +   YP     + K+K F +F+    ++ K
Sbjct: 238 KCLVTKELKTSELIPILEHLDQRKLDISLLYPNRRYLSPKVKVFIDFLTTLMKEQK 293


>gi|53717318|ref|YP_106101.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|124382129|ref|YP_001025893.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|254176620|ref|ZP_04883278.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254359047|ref|ZP_04975319.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52423288|gb|AAU46858.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|148028234|gb|EDK86194.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160697662|gb|EDP87632.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|261826665|gb|ABM98992.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 323

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 139/302 (46%), Gaps = 27/302 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EFL  YP+
Sbjct: 65  AGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLLEFLRRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++Q+ + N+ ID+  D  D A+R+R +P QS++++ R L         AP  L+    P
Sbjct: 125 VRVQIRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVGAPSLLQQNAPP 184

Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231
           L+  +L   + +    GD        FN +A    P G       EPR   L     ++I
Sbjct: 185 LAPDDLAGFDTLDTPSGD----GRHVFNLIA----PDGTRHTHEHEPR---LVTADLMTI 233

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +  + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R 
Sbjct: 234 REAVLDGGGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRA 290

Query: 289 FI 290
           F+
Sbjct: 291 FV 292


>gi|71909442|ref|YP_287029.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB]
 gi|71849063|gb|AAZ48559.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 335

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 110/208 (52%), Gaps = 3/208 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  V  + SFT AA+ L L +++++  I  LE  + ++L  R  R ++LT  G+
Sbjct: 4   FQAMQVFTRVVDANSFTRAADMLGLPRATVTTIIQNLEALLQVRLLNRTTRRISLTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   + +  ++E T+   ++ +  P G+LRI     +G+ +L   L EF   YP++++
Sbjct: 64  AYYEHCARILGEVEETESSFRDVAAGPKGRLRIDVPSPIGRLVLIPRLCEFRARYPEVEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC IR    +Q S+L+ R++  I +   A P YL+    P SI 
Sbjct: 124 VIGMGDRMVDLVREAVDCVIRAGD-LQDSTLVARRIGAIKLITCATPDYLERYGVPRSID 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD 212
           +L +H  + +     +   +F+W   VD
Sbjct: 183 DLQQHVAVHY--FSHRTGRNFDWDFIVD 208


>gi|172061627|ref|YP_001809279.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994144|gb|ACB65063.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 295

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 128/249 (51%), Gaps = 15/249 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R I G+E  +G +L  R  R L+LT+ G   H
Sbjct: 7   MRLFIKVAELHSFARAATELNISNSSATRLIMGIEDRLGARLLNRTTRSLSLTDAG---H 63

Query: 68  RVTSEVYHKLETTQIELQESSV-----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              +++ H +E  +I+  E ++     +P G L+IA  +  G ++L   +  F  L+P I
Sbjct: 64  LYLAQIRHVVE--EIDRVEETIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTLHPAI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++ + ++ +D+  +  D  + L + I +++L+ R L  +     AAP Y++    P+ 
Sbjct: 122 VPEVTIVDRHVDLVSEGFDVGLLLSQRISTNTLVTRPLTRLKRIVCAAPRYVEAHGAPIH 181

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L  H  +TF  D   + M  F+   T  R    P  S    N  L I  + + G GI
Sbjct: 182 PHDLASHACLTFHADFAGEYMS-FDHEPT--RVAVRPNKSASSNNIGL-IRNWALSGMGI 237

Query: 242 ALLPDYIVK 250
           A+LPD++V+
Sbjct: 238 AVLPDFLVE 246


>gi|330958769|gb|EGH59029.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 290

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 128/285 (44%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E+  G +L +R  R L LT  G     
Sbjct: 4   RVFIAINERGSLIAAAEALDMSRAMVTRYLAQMESWAGARLLHRTTRKLGLTASGQVTLL 63

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L Q +L   +  +L  YP   + L +
Sbjct: 64  RCQQLLELADAVPLAADTQVDEPRGMLRIACSQSLAQAVLAPAVTAYLQRYPGTSVDLHI 123

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   +LI R L   +    AAP YL     P   QEL+ 
Sbjct: 124 GNETVDLVSERIDLAIRITNQLD-PNLIARPLGHCNSVVCAAPAYLAAHGTPSRPQELNS 182

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K + +F    +   P+  P    L  N  + +++  V G+GIAL P + 
Sbjct: 183 HNCLTY-SYFGKSLWEFTHQQS---PLSVPVGGNLSGNDSVVLLEAAVAGAGIALQPVHS 238

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  L+ +M D    +  ++  Y      +  L+   +F+
Sbjct: 239 AAPLIASGQLIALMPDYQPKAMGIHAIYTSRHHQSATLRTMLDFL 283


>gi|319790788|ref|YP_004152428.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593251|gb|ADU34317.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 303

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 12/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A +G FT AA    ++ +++SR IS LE  +G++LF R  R + LT+ G    
Sbjct: 13  IELFCLAAETGGFTSAALAAGVTPAAVSRSISRLEKRLGLRLFVRTTRSVRLTDAGRSYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   + E+     +PSG LRI+     G + +   L  F   YPDI++ + 
Sbjct: 73  AQCRQALAQLAEAEREVMGQQAQPSGTLRISVPTTYGHHRILPMLPAFRERYPDIRLHVH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID   +  D A+R+R     S+LI R L    +   A   YLK    P +  +L 
Sbjct: 133 LSNRNIDFVEEGYDMAVRVRAQ-PDSTLIARHLEDAALVVVATRKYLKAAGTPRTPDDLA 191

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H  I F   +P      +WL      DR +  +   SC   +  L  +     G+G+  
Sbjct: 192 AHECIQFE--LPSSGRRISWLFKEEGQDREVLADSAYSC--SDDVLGGVTLAKSGAGLFQ 247

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              ++V+    + +LV +++     S      YP+      +++ F +F+  +
Sbjct: 248 TYRFVVQKELADGSLVEVLKPFAGRSRPYTLLYPDGRHAPLRMRVFIDFLMAQ 300


>gi|190893177|ref|YP_001979719.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190698456|gb|ACE92541.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327190977|gb|EGE58031.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 303

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 136/287 (47%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G+FT AA+ L + +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++  +LE     L  S   PSG+LR+  +      ++   L +F   YPDI++ L 
Sbjct: 67  ERAAQLISELEELDGSLSNSQSLPSGRLRVEMSGAFADAIVVPALCDFYQRYPDIRLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D  ++  DCA+R   P    SLI R++  + +   A+P Y++    P   ++L+
Sbjct: 127 VSDRTVDYLVENVDCALRAGTP-ADQSLIARRVSEMELITCASPSYIQKFGMPERPEDLE 185

Query: 188 -KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + +          F +    +     PR     VN   + +   + G G+A +P 
Sbjct: 186 AAHYSVNYFRAQNNRTLPFEFRRDNETIETNPRY-IASVNDSRTYLTAALTGLGVAQVPT 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ ++      LVR++ +       +Y  YP     + K++ F +++
Sbjct: 245 FMAREPMRRGELVRVLPEWRRDPIPLYVVYPPNRHLSNKVRVFVDWL 291


>gi|170695012|ref|ZP_02886161.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140110|gb|EDT08289.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 333

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 137/286 (47%), Gaps = 8/286 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + VF  +  + SF+ AA  L+L ++S S  I  LE  + ++L YR  R + LT +G+
Sbjct: 5   FQAMVVFTRIVETNSFSRAAVSLNLPRASASNIIKSLEAHLRVRLLYRTTRRINLTAEGA 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++   LE T+  L   +    G LRI     +G+ ++   + EF  +YP + +
Sbjct: 65  QYYERCVQILSDLEETEYALTSGASGIHGTLRINLPPAIGRTVIVPRIHEFCSMYPQVDL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D+  +  DCAIR+   ++ SSLI R+   + M   A+P Y++    PL I 
Sbjct: 125 RIGFSDRRVDLVQEGIDCAIRV-GLLEDSSLIARQFGHVEMLTSASPRYIQRHGCPLEID 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243
           +L +H  +       + + DFN++        E RI      S +     C L G G+  
Sbjct: 184 DLPRHFAVHLLSGSGRNL-DFNFVRNGH--AAEIRIPGTVAVSDVDAYIRCGLDGMGLIQ 240

Query: 244 LPDYIVKDNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAF 286
           +P ++V+++     ++E +         V   YP     + K++AF
Sbjct: 241 VPAFMVREHLRSGELLEVICHHRPQPIPVSAIYPANRHLSSKVRAF 286


>gi|163738462|ref|ZP_02145877.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161388383|gb|EDQ12737.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 292

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 131/286 (45%), Gaps = 16/286 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ +R F   A +GS +  A +L L+Q ++SRQ++ LE ++G+ LF R  RGL LT  G
Sbjct: 5   DWNHIRAFLATAETGSLSAGARKLGLTQPTLSRQVAALEADLGVLLFERLGRGLALTSAG 64

Query: 64  SKL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             L  H  T     +  +     Q  +++  G +RI  +  +   +L   L +     P 
Sbjct: 65  HDLLNHSRTMGAAAEALSLAATGQAQAIE--GTVRITASDVMSAYVLPPALHQLRRRAPR 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I ++  N   D+    AD AIR  +P Q   LI R +   H H YAA  YL+    P 
Sbjct: 123 LTIDVVAANDIRDLMRREADIAIRHVRPDQ-PELITRLVRESHAHFYAASSYLERRGRPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLG 238
           S +++ +H+ + F DL         ++A    P+G     +   ++  S L+  +    G
Sbjct: 182 SPEDMSRHDFVGFADL----ERSIEFMA----PLGIHLTAQNFRIKSTSGLASWELVKQG 233

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            GI  +   +    P + R++  +   +F ++      L  + +++
Sbjct: 234 FGICPMMTAVADPTPGIERLLPGLDPITFPIWLTTHRELHTSRRIR 279


>gi|238896505|ref|YP_002921243.1| putative transcription regulator protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238548825|dbj|BAH65176.1| probable transcription regulator protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 303

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 133/294 (45%), Gaps = 24/294 (8%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V   GSFT AA +L LS   + + I+ LE+++  +L  R+ R  +LT+ 
Sbjct: 2   DKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         V  ++   +  ++   + P+G LR++     G +++      FL  +P +
Sbjct: 62  GRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPAV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D+  +  D AIR+ + I    L+ R L    M   AAP YL     P  
Sbjct: 122 RVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPGR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYC 235
            ++L  H           C+    W A        V+  +   R + L+ N   ++ Q  
Sbjct: 181 PEDLADH----------LCLSHTVWTARNEWRLPGVEGEVRWKRDAVLRCNDGYALRQAA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + G+G+ + P+ ++ D   + +LVR++E        V+  + +  +   KL  F
Sbjct: 231 IAGAGLLMQPEVLLADALASGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQF 284


>gi|254475720|ref|ZP_05089106.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214029963|gb|EEB70798.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 308

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 120/255 (47%), Gaps = 8/255 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRVSPAVTSARISQLEEYLGVRLFQRTTRNLTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++  + ++   +  P G L +A  + LG+ LL   + EFL  YP
Sbjct: 60  EQGRAFYDGAVAVLDAVDEAEAKVMHLTETPRGTLFVAAPLGLGRRLLAPQVPEFLDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L L ++ +D++ +  D A  L +P + S+L  RK+        AAP Y+     P
Sbjct: 120 EINLRLRLSDRAVDLTSEGLDLAFFLGQP-EDSNLRIRKIADCPRVLCAAPDYIARRGMP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
                L  D H+ +      P   E F W L T D P         + +    +  + + 
Sbjct: 179 QDGSALLRDGHDCLNL--RYPGASE-FQWLLQTADGPRRFAVSGRYECDDGDVLTDWALA 235

Query: 238 GSGIALLPDYIVKDN 252
           G GI L P++ V D+
Sbjct: 236 GEGIILKPEFEVADH 250


>gi|115525808|ref|YP_782719.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115519755|gb|ABJ07739.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisA53]
          Length = 299

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 1/192 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA    F  AA +L LS S+++R ++ LE  VG +L  R  R +TLT+ G++
Sbjct: 5   DAMTAFVAVADLQGFAPAARKLRLSPSAVTRLVAALEERVGARLLQRTTRSVTLTDVGAR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +E  +   Q    +PSG+L ++     G+  +   +  +L  YP++  +
Sbjct: 65  YLERARRILADVEEAEHSAQAERTRPSGRLVVSAPFGFGRVHVTPLISAWLKRYPEVAGE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +++  D  DCAIR+   +  SSL+ R +  +     A+P YL     P + Q 
Sbjct: 125 LRLTDRVVNLVEDGVDCAIRIGH-LPDSSLVARAVGDMRRIVVASPAYLAARGTPKTPQA 183

Query: 186 LDKHNLITFGDL 197
           L  H+ I FG L
Sbjct: 184 LAGHDTIRFGAL 195


>gi|115352045|ref|YP_773884.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282033|gb|ABI87550.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 305

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 134/293 (45%), Gaps = 14/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  V    SF+ AA  LHL+  ++S+QI+ LE  +G  LF R+ R L +T +G  
Sbjct: 10  DDLAVFVHVVERQSFSAAARDLHLAPKTVSKQIARLEQALGTTLFERNTRNLRITGEGRA 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +          LE  Q      S + SG +R+      G+  +   + +F  L+P +   
Sbjct: 70  IAERARVALAVLEEVQELATGGSQELSGTIRLTAPTPFGRKFVAPAIHDFCRLHPRVGFD 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  D+     D AIR+ + +  S L+ R++        A+P YLK    P   +E
Sbjct: 130 LRLSDQVQDLYSGDLDLAIRMGE-LADSRLVARRVADNRRILAASPDYLKAHGRPTQPEE 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++HN + F    P  ++    L     ++PI      C      L    +C+ G GI+L
Sbjct: 189 LERHNCLVFA--YPGLLQSIWPLRRGRREKPIAVSGTLCSDNGDVLHA--WCLAGLGISL 244

Query: 244 LPDYIVKD---NPNLVRIMED-VITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +   +  LVR++ D   TPS  ++     E +    +L AF +F+F
Sbjct: 245 RETWDIHEELRDGRLVRVLPDWEATPSKISIVRARREPVPR--RLTAFSDFLF 295


>gi|107022523|ref|YP_620850.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116689472|ref|YP_835095.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170732778|ref|YP_001764725.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|206559824|ref|YP_002230588.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|105892712|gb|ABF75877.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116647561|gb|ABK08202.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169816020|gb|ACA90603.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
 gi|198035865|emb|CAR51756.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 313

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD+ ++L
Sbjct: 66  LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRERYPDVHVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+++   P    +L
Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVESHGVPQRPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  +  G + P    D   LA  +     PI  P     +VN   ++      G G+ 
Sbjct: 186 AQH--VCLGMVAPGFHFDEWALAGPNGDEVVPITAP---PFRVNVAEALAVAVREGMGVG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP Y       + ++VR+M +  +    +Y  YP       K++ + +F+
Sbjct: 241 GLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 291


>gi|254788443|ref|YP_003075872.1| LysR family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237686953|gb|ACR14217.1| transcriptional regulator, LysR family [Teredinibacter turnerae
           T7901]
          Length = 302

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 132/297 (44%), Gaps = 11/297 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR F  V  +G FT AA +LH + +S+S  I  +ET++G +LF R  R L LTEQG++ 
Sbjct: 10  ELRQFVAVVETGGFTAAAHRLHQTTASVSLAIKRMETQLGARLFERSTRNLQLTEQGAQF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++V+      L+     L+ S     G L IA   DL   LL   L+EF   +P++ + L
Sbjct: 70  YQVSKRTLSVLQEGVESLRVSQDAVRGPLVIAAPGDLALTLLGRMLREFQHKFPEVALDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +    +  +  D A+R   P+  S L+ R+L T      A+P YL     P S+ +L
Sbjct: 130 RVSDSVSGVVGEGIDLALRY-GPLPDSELVARELHTGRRLLCASPDYLNRAGVPRSLADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGSGIALLP 245
            +H  + F         D  W    +       ++C  V    ++ + + + G G+    
Sbjct: 189 SEHRCLCFRR---SGRADTQWQFMQEGERFAVTVNCALVTDNSAVARDWALAGEGLVYKS 245

Query: 246 DYIVKDNPNLVRIM------EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              V D+    R+       + + TP F VY       +   +L AF    F +  D
Sbjct: 246 GLDVYDDIAAGRLRTVLTDYQGIQTPLFAVYAGAQYQPRRLRELLAFLQAAFARIPD 302


>gi|209550132|ref|YP_002282049.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535888|gb|ACI55823.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 300

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 129/262 (49%), Gaps = 23/262 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G FT AA    ++ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERGGFTAAALARRMTPSAVSKLVARLEQRLGARLVNRSTRKLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +  +  +   +   + E Q SS  + SG++RI T+   G ++L   +  F+ L+P + + 
Sbjct: 71  YERSIAILADI--AEAERQASSGEQASGRIRINTSGSFGNHVLAPLMPAFMALHPAVTLD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  + AD AIR   P+++SSLI RKL        A+P YL+   EP ++ +
Sbjct: 129 ISHTDRIVDLMEERADVAIRA-GPLKNSSLIARKLGATGKIIVASPDYLRRHGEPRTVAD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD----RPIGE----PRISCLQVNSYLSIMQYCVL 237
           L +H           C   F++   V+    R  GE    P    +QV    ++    + 
Sbjct: 188 LRRH-----------CRIGFSYARAVEGWPLREDGETITIPITPGVQVGDGEAMRHLALS 236

Query: 238 GSGIALLPDYIVKDNPNLVRIM 259
           G+G+A L  + V+ + +  R+M
Sbjct: 237 GAGLARLAAFTVRADIDAGRLM 258


>gi|53721400|ref|YP_110385.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76818985|ref|YP_337081.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|167722441|ref|ZP_02405677.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167741423|ref|ZP_02414197.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167818606|ref|ZP_02450286.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167826983|ref|ZP_02458454.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167848498|ref|ZP_02474006.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167897050|ref|ZP_02484452.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167921668|ref|ZP_02508759.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|254185299|ref|ZP_04891887.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|52211814|emb|CAH37813.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|76583458|gb|ABA52932.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|184209534|gb|EDU06577.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 323

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 139/302 (46%), Gaps = 27/302 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EFL  YP+
Sbjct: 65  AGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLPEFLRRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++Q+ + N+ ID+  D  D A+R+R +P QS++++ R L         AP  L+    P
Sbjct: 125 VRVQIRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVGAPSLLQQNAPP 184

Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231
           L+  +L   + +    GD        FN +A    P G       EPR   L     ++I
Sbjct: 185 LAPDDLAGFDTLDTPSGD----GRHVFNLIA----PDGTRHTHEHEPR---LVTADLMTI 233

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +  + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R 
Sbjct: 234 REAVLDGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRA 290

Query: 289 FI 290
           F+
Sbjct: 291 FV 292


>gi|13472623|ref|NP_104190.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023369|dbj|BAB49976.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 299

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 139/287 (48%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G  L  R  R  ++TE G   
Sbjct: 6   RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R  SE+  ++++    ++ESS    G+++++         +  +L +F   +PDI + +
Sbjct: 66  YRRASEIVREVDSLADAVRESSGDVRGRIKLSAPRTFADAPIGQSLIDFAKQHPDIVLDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D A+R+ + +++SSLI R+L    +   A+P  +     P   Q+L
Sbjct: 126 QLDDRFVDLVEEGFDLAVRISR-LENSSLIARRLAPFSVKLCASPELIAKHGMPTRPQDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I   D   + + ++ +    +  +       ++VNS ++     + G G  +LPD
Sbjct: 185 GHMPCIV--DTNGRGLNNWAFKGDNNDQLSVAVAGPIEVNSPMAARAAALSGLGFCILPD 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +I   +     LV  ++D I     ++  YP       K++ F +F+
Sbjct: 243 FIASPDLKSGQLVTALDDRILSGGGIFAVYPHRRYLPAKVRVFVDFL 289


>gi|254239425|ref|ZP_04932747.1| hypothetical protein PA2G_00038 [Pseudomonas aeruginosa 2192]
 gi|126192803|gb|EAZ56866.1| hypothetical protein PA2G_00038 [Pseudomonas aeruginosa 2192]
          Length = 304

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 9/275 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D L  F V+   GSFT AAE+L  S+  +S++I  LE ++G+ L +R  R L+LT  G
Sbjct: 3   DLDDLAAFAVLHDLGSFTRAAERLGCSKGQLSKRIGVLEQKLGVTLLHRTTRRLSLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +  + E  +  +     +  G++R+   + LG+ L    L++F   +P ++
Sbjct: 63  AALLPEAQALLVQAERARQAVARLQERAEGRVRVTLPVSLGETLFDALLEDFQECHPLLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N   D+  +  D AIR     Q + L+ R L  +     A+P YL    EP   
Sbjct: 123 VELDLYNGLRDLVGEGFDLAIR-SGVEQDARLVARPLFVLQEITCASPAYLARHGEPQRP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242
            EL +   +    L         WL      +   R++    +++ S+++   L G+GIA
Sbjct: 182 AELAERECL----LNSHYSGHEEWLYHRHHRLERVRVAGFLASNHYSLLKKAALAGTGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            LP Y+V D   +  L  ++ D  T S  ++  +P
Sbjct: 238 RLPSYMVHDELGDGRLAWLLRDYQTRSTPMFLVHP 272


>gi|300313017|ref|YP_003777109.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075802|gb|ADJ65201.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 305

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 139/293 (47%), Gaps = 13/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W +  +F  VA  GS + AAE L LS ++ SR ++ LE  +G +L  R  R L L+  G 
Sbjct: 4   WSQFELFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSRAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R       +++  + ++  +S  PSG LRI +++      +   L  F   YP++++
Sbjct: 64  DFYRHCKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPEVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I  N+ +D+     D AIR R+    +++  R+L T      AAP YL     P ++ 
Sbjct: 124 EVIAANRYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPRTLD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L +H+L+ +        ++ N L    R  G  R     S +Q N    I    + G G
Sbjct: 184 DLAQHDLLVYSH-----AKEPNRLHLSGRD-GSQRTLEIKSLMQSNDGQIIRAAALEGLG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I + P+YI+ D+     LV ++++   P  ++   Y        +++ F +F+
Sbjct: 238 ILIQPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVRVFIDFL 290


>gi|184158220|ref|YP_001846559.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332875771|ref|ZP_08443570.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209814|gb|ACC57212.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322508541|gb|ADX03995.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323518158|gb|ADX92539.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332736035|gb|EGJ67063.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 310

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 13/255 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQKYHLAASPQYIAKYGTLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236
              EL++H  + +     K  E  N WL  V +P  E    P    L  N+  S+M   +
Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWL--VRKPNEEWVHYPITPLLSSNNAESLMTAAL 237

Query: 237 LGSGIALLPDYIVKD 251
            G GI L PD+++ +
Sbjct: 238 HGMGIVLFPDWLIGE 252


>gi|167589838|ref|ZP_02382226.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 297

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 134/298 (44%), Gaps = 21/298 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AAEQ+ L + ++S  +  LE  + I+L  R  R + LT +G+  +
Sbjct: 1   MRIFARVAHLGSFTKAAEQMQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTAEGATYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+  +   +++   P G +R+        N +   +  F   YPD++I + 
Sbjct: 61  ERCARLLADLDDVETLFEDAGASPRGVIRVDLPERFALNKVIPAIPSFHARYPDLRIVMS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P S  +L 
Sbjct: 121 TTDRFVDLIADGIDCAVRV-GALSDTSLVARRIGELAQVNCASPAYLARHGTPRSPDDLP 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  +  G    +   + +W    D   GE       S + VNS  + +  CV G G+  
Sbjct: 180 EH--VAVGYFSTRTGRELDW-EYADMDTGEMHAVKMRSVVSVNSSQAYLACCVAGLGLIQ 236

Query: 244 LP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            P    D  + D   LV ++ +       V   +P      G+  A R  IF+   DW
Sbjct: 237 APRDGLDAPLADG-TLVEVLPEWNAAPLPVSVVFPH-----GRHLAPRVRIFV---DW 285


>gi|34496171|ref|NP_900386.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34330287|gb|AAQ58392.2| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 313

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 133/293 (45%), Gaps = 13/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +AR+GSFT AA+ L   +S +S ++  LE E+G  L  R  R + LTE G +
Sbjct: 5   DNLLAFDALARAGSFTAAADLLDCHKSLVSARVKELEREMGAALVLRTTRRVALTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +   L   ++ + E+     G L ++TT  L Q++L   L E   L+P +Q+ 
Sbjct: 65  LRPHAARLRETLSQARMAVDETQSDIEGPLTVSTTSSLAQHVLGPALSELAALHPGLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L ++N+  D   D  D  +R  +   +    L+ R       + YA+P YL   R P   
Sbjct: 125 LEVNNRLQDPVADVLDFCLRSARSHTVHDDRLVARLAGYASENLYASPAYL--ARHPAIR 182

Query: 184 QELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           Q  D   H L+         ++    LA  ++ + +P  +   +N Y       + G GI
Sbjct: 183 QPADLAAHRLLVMESEQRGGLK----LARGEQLLSQPVGALFYLNDYPLRTHLALAGHGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +L DY V+    +  L R++ +     + +Y  +P     T K + F +F+ 
Sbjct: 239 TMLADYAVQSHLRDGELARVLPEWHCDYWPIYLVHPFRAPLTRKYQTFIDFVL 291


>gi|134291820|ref|YP_001115589.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135009|gb|ABO59334.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 298

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 133/284 (46%), Gaps = 25/284 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR GSF  AA      ++++SR++S LE  + ++LF R +RG+TLT++G  L+  T
Sbjct: 9   FNLVARHGSFGEAARAAGRPKATLSRRVSELENSLALRLFERGSRGVTLTQEGRALYERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  +   +     +P G+LRI+  +   Q  +   +  F L YP++++++  D+
Sbjct: 69  GALLAELADSAAAIASGGERPRGRLRISAPMLFSQLAMGKLVATFALKYPEVRLEVTTDD 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLSIQELD 187
           + +D+  +  D  IR+  P   ++LI R  +   +   A P   +       P  ++  D
Sbjct: 129 RPVDMIEEGYDLVIRV-NPDPDATLIGRVFLRDRLAVVATPALSRPGDGAAAPAVVRTAD 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
             +L T  D+I               P G  RI+     +++S + +     LG G A L
Sbjct: 188 --DLRTAWDVI--------------GPAGPARIAFEPVARLSSLVMVRDTVRLGLGAACL 231

Query: 245 PDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286
           P  +V  +     ++   DV  P   ++  YP     + ++ AF
Sbjct: 232 PVSLVSGDLAAGTLVSWGDVPGPDIALWALYPSRRLLSARVSAF 275


>gi|261821648|ref|YP_003259754.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261605661|gb|ACX88147.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 300

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 4/176 (2%)

Query: 5   WDKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +D+L      AR+G   S+T AA  L +S S+IS+ I  LE  +G+ LF R  R L LT 
Sbjct: 7   FDRLTGLIAFARAGALGSYTAAARSLSVSPSAISKSIQRLEKRLGVTLFTRTTRSLVLTA 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +LH     +    E  +   + +  +P+G LRIA ++  G +++   L +F  L+P 
Sbjct: 67  EGRELHERALRLLRDAEEFEQIAKRTHAEPTGTLRIAASLPTGVHMIAPVLPQFCALHPK 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           + I L L ++ + I  +  D AIR+   +  S+L+ R+L    +  YA+P YL +C
Sbjct: 127 VTIDLRLSDRVVSIVDENIDIAIRI-GDLADSNLLSRRLPPYQIGCYASPEYLASC 181


>gi|148252976|ref|YP_001237561.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405149|gb|ABQ33655.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 307

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 131/289 (45%), Gaps = 10/289 (3%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V  +GSF+  A +  +S+++++RQI+ LE   G++L +R  R L+LTE G  L  +   V
Sbjct: 13  VTETGSFSAVARERDVSKAAVTRQIAFLEEHFGVRLLHRTTRKLSLTEDGRTLLDLARPV 72

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              +ET +  L   S  P G +R+   +    + L   L   L   P +Q++LI++++  
Sbjct: 73  LEGVETMEATLGRQSTSPVGLVRVGIMV-AASHFLAPRLPTLLASNPGLQVELIVNDRFG 131

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+  D  D A+R  + I   S++ R++        AAP Y++    P +  EL +H  I 
Sbjct: 132 DMIEDRLDLAMRAGE-ITDVSVVARRIGIAARVVVAAPRYIEARGHPSTPVELGRHTCIV 190

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252
             D+ P   +   W         E R+S  ++ N    +      G GIA LP   V D+
Sbjct: 191 H-DVGP---DSDMWTFGGSHGAEEVRVSGSIRANDGAVVHLAARAGYGIAFLPLVQVVDD 246

Query: 253 ---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
                LVR++ D  +P   +   Y        + +    FI  + R  +
Sbjct: 247 LRSGALVRVLGDRPSPGLPLSLTYSSRRHLAPRTRVVMEFIIEQVRQMR 295


>gi|264679961|ref|YP_003279870.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210476|gb|ACY34574.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 291

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 134/274 (48%), Gaps = 11/274 (4%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SF  A   L +S S++ + ++ LE ++G++LF+R  R + LT++GS  H     +  +L 
Sbjct: 18  SFAEAGRALGISASAVGKNVARLEQQLGLRLFHRTTRQVRLTQEGSLFHERCRRILDELH 77

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
             +  +Q ++  P G+LR++    +G   L   L EF   YP++++ L  ++  +D+   
Sbjct: 78  DARAAMQAAAEAPRGRLRVSLPT-IGYRFLLPVLPEFQARYPEVELDLDFNDHLVDVVEA 136

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D  IR    +  S L+ R+L        A+P YL     PL+  +L  H+ + +  L 
Sbjct: 137 GLDVVIR-SGELADSRLVARRLGPFRFILAASPAYLSKRGVPLTPPDLAGHSSLRYRFLN 195

Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNL 255
              +E++        PI       L  N+  +++   V G G+A +PD++ +D      L
Sbjct: 196 SGKLEEWMLPGLPAMPI------ALVCNNMEAMLGAAVSGLGLAYMPDFLARDALARGEL 249

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +++ + +T S      +P + + + K++AF +F
Sbjct: 250 QQVLAEQLTHSGQFSALWPSSRQLSPKVRAFVDF 283


>gi|163742128|ref|ZP_02149516.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384458|gb|EDQ08839.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 292

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 131/286 (45%), Gaps = 16/286 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ +R F   A +GS +  A +L L+Q ++SRQ++ LE ++G+ LF R  RGL LT  G
Sbjct: 5   DWNHIRAFLATAETGSLSAGARKLGLTQPTLSRQVAALEADLGVLLFERLGRGLALTSAG 64

Query: 64  SKL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             L  H  T     +  +     Q  +++  G +RI  +  +   +L   L +     P 
Sbjct: 65  HDLLNHSRTMGAAAEALSLAATGQAQAIE--GTVRITASDVMSAYVLPPALHQLRRRAPR 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I ++  N   D+    AD AIR  +P Q   LI R +   H H YAA  YL+    P 
Sbjct: 123 LTIDVVAANDIRDLMRREADIAIRHVRPDQ-PELITRLVRESHAHFYAASSYLERRGRPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLG 238
           S +++ +H+ + F DL         ++A    P+G     +   ++  S L+  +    G
Sbjct: 182 SPEDMSRHDFVGFADL----ERSIEFMA----PLGIHLTAQNFRIKSTSGLASWELVKQG 233

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            GI  +   +    P + R++  +   +F ++      L  + +++
Sbjct: 234 FGICPMMTAVADPTPGIERLLPGLDPITFPIWLTTHRELHTSRRIR 279


>gi|187928087|ref|YP_001898574.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187724977|gb|ACD26142.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 298

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 150/304 (49%), Gaps = 21/304 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAE+L  + S +SR +  LE ++   L  R  R L+LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAERLGQTVSGVSRALRRLEEKLDTTLLSRTTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  + ++     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGATFLAQARSILAAVDEAEEQIALRRQQPAGRLRVNAAMPFMLHVVAPLVPDFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  ++  ID+  +  D AIR+   ++ S+L  R L T  +   A+P YLK    P
Sbjct: 121 QIELELNTNDLIIDLLEEDTDVAIRI-GTLRDSTLRARLLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + EL KH L+ F  + P+ +  +       DR   EP    L+ +S  ++ Q  + G+
Sbjct: 180 RHVDELQKHALLGF--VQPESLNQWPLRGPYGDRLRIEP---TLKASSGETLRQLALQGA 234

Query: 240 GIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291
           GI  L D++  ++    +L+++++D    V+ P   VY+      +NT        F+ F
Sbjct: 235 GIVCLADFMTAEDRRAGDLMQVLQDATVEVLQPIHAVYY------RNTQLASRIACFLDF 288

Query: 292 LKAR 295
           L+AR
Sbjct: 289 LEAR 292


>gi|330969872|gb|EGH69938.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 303

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 136/306 (44%), Gaps = 13/306 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+FD + + +F  V RSGSF  AA  L +  +++SR++  LE ++  +L  R  R L LT
Sbjct: 1   MAFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLT 60

Query: 61  EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           + G   + R  S V   +E  + +L     +P G +RIA   D         +  FL  Y
Sbjct: 61  QAGEDFYGRCVSAVDGVMEAAE-QLVSGRDEPRGLVRIAAMADFFDFFSMDWVAGFLARY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178
           P +Q++ +L +   D+  D  D A R   P+Q S  + R+L+   H    A+P Y+    
Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDEGHDTMVASPAYIAAHG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
            P S+  L  H  ++             W L   +  + E  I+     N+  ++ +  +
Sbjct: 179 LPDSLHSLHGHYCVSAAHRGGVTA----WRLLGPEAKMHEVHIASRFNANTAQALRKATL 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K
Sbjct: 235 AGLGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDK 294

Query: 294 ARDWKF 299
            RD  F
Sbjct: 295 LRDKAF 300


>gi|194444827|ref|YP_002042855.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403490|gb|ACF63712.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 300

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 8   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 68  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLPTFLHQYPGIALELC 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 187 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI   P   V++      L+ I+         V   YP
Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275


>gi|78067284|ref|YP_370053.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968029|gb|ABB09409.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 311

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 129/287 (44%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT  G+ 
Sbjct: 5   DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETGLGTRLLHRTTRQVQLTADGTL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +      +       G+L +     + + ++   L      YP +Q+ 
Sbjct: 65  LLERGRRLLSEADELDRLFRGRDRDVIGRLTVDVPSRIARRMVAPALPSLFHRYPKLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P     
Sbjct: 125 LGSTDRSIDLVQEGVDCAIRVGR-LAESSLVVRPLGQFTLINCASPDYLRECGVPEHPDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H     G + P    + +W    D     +G P  S + VN+  + +  C+ G G+ 
Sbjct: 184 L-AHGHWAIGYVSPTTGRELDWEYCADGERHTLGLP--SRVIVNNAETYIASCIAGMGLI 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P + V+   D+  LV +M D       V   YP     + +L AF
Sbjct: 241 QIPRFDVQHLLDSGALVDVMPDHRAAPMDVSAVYPHRRHRSRRLNAF 287


>gi|317494124|ref|ZP_07952540.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917897|gb|EFV39240.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 308

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 142/289 (49%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   + R GSF+ AAE L  + + ++++I  LE   G KL  R ARG+ LT+ G + +
Sbjct: 16  LQVLVEIVRCGSFSAAAESLGQTPAFVTKRIQILENIFGTKLLNRSARGVALTDSGKQCY 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+    +L ++  +P+G +RI  +   G++ +   + + + LYP++QI   
Sbjct: 76  EQGLNILTQLQKLMDDLGQTKTQPAGMVRIGCSFGFGRSHIAPAITQLMQLYPELQIHFE 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+S D  D  IR+   I   + I R L        A+P Y +    P ++ EL 
Sbjct: 136 LFDRQIDLSRDNIDIDIRINDEI-PDNYIARLLAKNKRILCASPKYFEKRNPPQTLTELL 194

Query: 188 KHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           +H+      LI K  +     W    +      +IS  L  NS   I+++ + G GI + 
Sbjct: 195 EHDC-----LITKERDSTAGIWELECEHEKKTVKISGHLSSNSGEIILRWALEGKGIMMR 249

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ V    ++  L+R++ +  + S  ++  Y + L  + KL+   +F+
Sbjct: 250 SEWDVVPFLNSGKLIRVLPEY-SQSANIWAVYQKPLYQSAKLRVCVDFL 297


>gi|163855650|ref|YP_001629948.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163259378|emb|CAP41678.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 328

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 136/299 (45%), Gaps = 28/299 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +GSF+  A QL  + S+ISR ++ LE  +G +L  R  R L L+E G   
Sbjct: 12  EMAVFVKVVETGSFSETARQLGATPSAISRSVARLEKALGTRLLQRTTRKLRLSEGG--- 68

Query: 67  HRVTSEVYHKLETTQIELQES---SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           H V +     +   Q  L+ S   S +P G +R++    +G+ ++  ++ +FL  YP + 
Sbjct: 69  HEVHARCLDMVSAAQAVLEVSGQFSPEPQGLVRVSVPKAVGRFVIHPHIPDFLARYPKVD 128

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL L+++ +D+  D  D AIR+  +P  S  L+ R+LV I     A P YL N   P  
Sbjct: 129 VQLQLNDRYVDLIDDEVDLAIRITDRP--SPGLMGRRLVDIDHMLCATPEYLANRGMPAH 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVL 237
             +L  H  +  G+       D  W        G+ R+S        VN   + +   + 
Sbjct: 187 PHDLKAHTCVFLGEE----PGDSRWKFLR----GDKRVSVSVHGRYAVNHTGARLDAVLH 238

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC------YPEALKNTGKLKAFRNFI 290
             GI  LP +  +      +I++ +    F   +C      YP       KL AF NF+
Sbjct: 239 HLGIGSLPYFTARHALQQGQIVQVLPEWEFKTNYCGEAWILYPPNRHLPPKLSAFINFM 297


>gi|126446435|ref|YP_001077982.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|238562568|ref|ZP_00440194.2| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|251767019|ref|ZP_02265687.2| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254200964|ref|ZP_04907329.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254204928|ref|ZP_04911281.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|126239289|gb|ABO02401.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|147748576|gb|EDK55651.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754514|gb|EDK61578.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|238522345|gb|EEP85790.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243064166|gb|EES46352.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 330

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 138/298 (46%), Gaps = 27/298 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE G  
Sbjct: 16  NDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTEAGQL 75

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  + +     +Q+    P G +R++  + + Q +L   L EFL  YP++++Q
Sbjct: 76  FYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLLEFLRRYPEVRVQ 135

Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + + N+ ID+  D  D A+R+R +P QS++++ R L         AP  L+    PL+  
Sbjct: 136 IRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVGAPSLLQQNAPPLAPD 195

Query: 185 ELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235
           +L   + +    GD        FN +A    P G       EPR+    +   ++I +  
Sbjct: 196 DLAGFDTLDTPSGD----GRHVFNLIA----PDGTRHTHEHEPRLVTADL---MTIREAV 244

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 245 LDGGGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 299


>gi|78066385|ref|YP_369154.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967130|gb|ABB08510.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 300

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 15/257 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +  R F  +  SG  T A+  L + +S++S ++  LE  +G++L  R +R L++T+ 
Sbjct: 2   LDLNDFRYFVRIVESGGLTAASRNLDIPKSTVSHRLQQLEAALGVRLINRTSRSLSVTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  ++E  V+P G +R  T +      ++  L +F+  YP I
Sbjct: 62  GQLFYSHAVTMLERAEVAENAVRERLVEPIGTIRFTTAVATSLYAMRQILPDFIKRYPKI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +   + ++  DI     D A+R    P+  S+L+QRKL       +A+P YL    +P+
Sbjct: 122 DVIEHVSDEQTDIVGGNFDLALRAHNGPLSDSALVQRKLAPAPWFLFASPDYLDRRGQPV 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW------LATVDRPIGEPRISCLQVNSYLSIMQYC 235
           +  EL  H+ +     + +    F W         V  P+ +PR++    N  +++ Q  
Sbjct: 182 APDELAGHDSL----FVTRHHLPFAWKLKHPSQGEVSVPL-KPRLAG---NDLVTLKQAA 233

Query: 236 VLGSGIALLPDYIVKDN 252
             G G+  LP Y+ +D 
Sbjct: 234 QDGLGVVALPGYVCRDE 250


>gi|317492343|ref|ZP_07950772.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919682|gb|EFV41012.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 298

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 141/298 (47%), Gaps = 13/298 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           +RVF  V   GS + AAE+L+LS++ +SR ++ LE  +G +L +R  R  +LT  G + L
Sbjct: 7   MRVFVCVVEQGSLSRAAEKLNLSRAMVSRYLADLEKWIGGRLLHRTTRSQSLTSAGEEVL 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  + +    E  QI +  +   P G LRI ++  L Q  L   + ++L   P  QI +
Sbjct: 67  ARCKALLLLSDEIEQI-VDNNQQIPRGLLRITSSQSLIQAFLTDAVCDYLTSNPPAQIDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               K +++  +  D AIR+   +  S+LI R+L T +    A+P+Y +    P  I++L
Sbjct: 126 CRQEKTLNLVDERIDLAIRITNQL-DSNLIARRLGTCYSVMCASPNYAERHPLPQKIEQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            KHN +T      +      W  T     +  P    L  N    +    + G GI+LLP
Sbjct: 185 SKHNCLTH-----EHYSHHQWGFTYHGNSVVVPVSGNLSANCATVLTSATLRGFGISLLP 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDWKF 299
            Y+V    ++  L+ ++ D    +  +Y  Y         L+ F +F+  + A D +F
Sbjct: 240 RYLVNQLLEDGQLLEVLPDYQPETLGIYGVYTSRQFMPTTLRVFLDFLVSRFASDPRF 297


>gi|226366625|ref|YP_002784408.1| LysR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226245115|dbj|BAH55463.1| putative LysR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 298

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 121/256 (47%), Gaps = 6/256 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  D LR+F  VAR G  T AA+ L ++ +++SR I+ LE  V  +LF R + G TLT+ 
Sbjct: 2   FSADDLRLFLEVARRGRLTEAAKYLQINHTTVSRHITRLERAVENRLFDRTSEGWTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +   +   Q +        +G +R+      G  LL   L      +PD+
Sbjct: 62  GLRLLAHAETIESAMRVAQEDCLSRDSSLTGHVRVIAPDGFGAYLLLPGLVGLQRQHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++++  N+   ++    D A+ + +P Q+ ++  +KL    +  YA+  YL +      
Sbjct: 122 TMEIVTANRHASLTPREFDLAVTIERP-QARAVTVQKLANYTLGFYASSDYLASHPPVEQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I++L KH LI + D        FN L  V  P  + RI   Q N+    +Q      GIA
Sbjct: 181 IEDLYKHVLIWYVDTALDHTT-FNLLYEV-LPNAKARI---QTNNIAGFIQAAEADLGIA 235

Query: 243 LLPDYIVKDNPNLVRI 258
           LLP +I   NP L R+
Sbjct: 236 LLPSFIADCNPRLQRL 251


>gi|330879631|gb|EGH13780.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 297

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 130/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPTEAGEQ 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +L+  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    AP Y +    PL  Q+
Sbjct: 127 VCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFEKHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W    D      R++     NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           +P  + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 244 VPISLARQHIESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAF 289


>gi|319787311|ref|YP_004146786.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465823|gb|ADV27555.1| transcriptional regulator, LysR family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 329

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 140/299 (46%), Gaps = 24/299 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYFAMVVEHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             ++R    +  + +  +  +   S +P G +R++  + + Q  L   L +FL  YP ++
Sbjct: 63  MSVYRHAQTMLTEAQAAREVVDRLSAEPRGLVRVSVPVAIAQQQLPKLLPKFLEQYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL ++N+ +D+  +  D AIR+R  +    SL+ R    I     A+P YL     P  
Sbjct: 123 LQLHVNNRRVDLINEGFDVAIRVRTRLDDDGSLVMRSFGQIQELMVASPKYLDRAGRPQD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--------PRISCLQVNSYLSIMQY 234
             +L  H  ++  +      ++ +    +  P GE        PR++       LS+++ 
Sbjct: 183 PSDLASHLTLSMHE------DEAHQRWELHGPNGEVRRVDNLQPRVAGFDFPLLLSMVKD 236

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
              G GI +LP+ +  +    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 237 ---GFGITMLPETVCAEA---VRNGELEVVLPEWSLPQGICHAVFASRRGLLPAVRVFI 289


>gi|158421708|ref|YP_001523000.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158328597|dbj|BAF86082.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 311

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 17/281 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   L +F  +  +G  + A  +L LS   +S+++  LE  +G +LF R  R +TLT
Sbjct: 1   MIGNLGDLEIFARIVTAGGLSAAGRELGLSPPVVSKRVQRLEERLGTRLFQRTTRKVTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +   +E  + +L   S +  G LR++     G+  +  +L   L   P
Sbjct: 61  EAGQGFYDRVVAILASVEEAESQLARRSSEARGLLRVSAPTSFGRLHIAPHLGPLLDANP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L L +  +DI  D  D AIR+   +  SSL+ R+L  +H    A P YL     P
Sbjct: 121 ELTVDLELSDAFVDIVGDGFDIAIRIAD-LTDSSLVARRLAPVHRVLCATPAYLARAGMP 179

Query: 181 LSIQELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  +L  H L+ T G       +D   L   D P+ +   S L+ NS   + +  + G 
Sbjct: 180 KTFADLADHVLLATHG-------QDPWRLQGPDGPVTQRVHSPLRTNSNEVVREAVLAGV 232

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYP 274
           GIAL   + V   P L      V+ P++       VY  YP
Sbjct: 233 GIALRSTWDV--GPELNSGALQVVLPAYRASHRVGVYAVYP 271


>gi|146342431|ref|YP_001207479.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146195237|emb|CAL79262.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 307

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 117/249 (46%), Gaps = 11/249 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA  GS +  A +L + QS+ISR +  LE  +G+ L  R  R +TLT++GS+ 
Sbjct: 10  NMRSFVRVAERGSLSAVARELGVGQSTISRHLQELEEAIGVPLLSRTTRRVTLTDEGSRY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   +E    E + +    SG +RI+ T   G   +   +  F   YPDI I L
Sbjct: 70  YANCVQILRLVEQAGDEARGARGAASGTIRISCTAAFGILHITRLVFAFQDRYPDIAIDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ID+  +  D A+RL  P+  SSL  R L   H    A+P YL     P + QEL
Sbjct: 130 NLTDERIDLVREGVDIALRL-APLTDSSLKLRSLGYSHRLLVASPDYLAKRGTPRTPQEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIA 242
             H+ I   +     +   + L  +  P GE    P   C + N  L + +  + G GI 
Sbjct: 189 IGHDGIRMTN-----VAGSDVLVVIG-PGGERHEVPFRGCFRTNHGLGVREAVLAGRGIG 242

Query: 243 LLPDYIVKD 251
               ++V D
Sbjct: 243 GSHAWLVHD 251


>gi|167621769|ref|YP_001676554.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351510|gb|ABZ74240.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 299

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 121/239 (50%), Gaps = 5/239 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA +GSF+ AA+ LH++++S +  I  LE  +  +L +R  R L LT +G+  +
Sbjct: 7   MRVFKSVAETGSFSKAADTLHIARASATMTIQKLEAHLKARLVHRTTRSLNLTPEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +    ++ + P GKLRI   + L + ++   + +F   YP+I++ L 
Sbjct: 67  ERCVRILTDVEEAESLFGQAGLGPRGKLRIDMPVML-RVIVLPQIGDFRARYPNIELMLG 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ ID+  +  DCA+R+   ++ SSL+ R++ T      A+P YL     P ++ +L 
Sbjct: 126 FNDRPIDLVHEGVDCALRI-GALRDSSLMSRRIGTYRTVTVASPEYLARQGTPSALADLS 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  + +       + D ++  TVD  PI         VN   + +Q  + G G+   P
Sbjct: 185 DHVAVNYFWAGSGRLMDLSF--TVDGGPITVKMNGAFAVNDTDAYLQSGLDGYGLIQAP 241


>gi|91789286|ref|YP_550238.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91698511|gb|ABE45340.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 309

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 2/192 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  V  +G+FT AA+ + + + +I+R I  LE E+  KL  R  R +T+T  G+
Sbjct: 4   FSAMQAFVRVVEAGTFTKAADSMAMPKPTITRLIQTLEKELDTKLLNRTTRKVTVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +  +   P G+L++     LG  ++   L +F   YPDIQ+
Sbjct: 64  AYYERAGRLLSEMEELEASMSRAKASPRGRLKVDIPASLGIAVIIPALPDFYARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +DI  +  DC +R  + I   SL+ R++   ++ + A+P YLK    P    
Sbjct: 124 DLGVSDRPVDIIAENVDCVVRGGELID-QSLVARRIGEFYLMSCASPAYLKRHGTPQHPA 182

Query: 185 EL-DKHNLITFG 195
           EL D H +I + 
Sbjct: 183 ELEDSHRMIRYA 194


>gi|86360547|ref|YP_472435.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284649|gb|ABC93708.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 317

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 10/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT  
Sbjct: 7   FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++      ++  + E  + +L + S+   G +R++             L  F   +P +
Sbjct: 67  GTRFVDTAEKMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLPRFAAQHPHL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+   + + +S   AD ++ L +P +     + KL   H+  Y +  YL        
Sbjct: 127 SLELVTIQQIMSLSRKEADLSVVLDEPKEGPYFAE-KLTDYHLQIYGSRDYLAKAPAITC 185

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             +L +H  +++  ++I       ++L+ V      PRI    Q +S  + +     G G
Sbjct: 186 RDDLLEHPFVSYIEEMI--FAPGLDYLSDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +LP +     P LVR++ + I      +      LK   +++A  +F+
Sbjct: 239 LCILPYFFASRYPELVRVLPEEIDLKRHYWITCHRDLKQAPRVRAVIDFL 288


>gi|78060453|ref|YP_367028.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965003|gb|ABB06384.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 327

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 138/292 (47%), Gaps = 13/292 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +A   SFT AA ++ +S++++S+ +  LE ++ +KL YR  R ++LTE G +L+   
Sbjct: 12  FVHIAHHLSFTRAAAEMGVSRAALSQNLKALEQQLNVKLLYRTTRDMSLTEDGQRLYDTL 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              +  +E     L E    PSG LR+ T+    + L++  L EF+  YP ++++L++++
Sbjct: 72  RPAFGSIEQAISSLHEVRHAPSGLLRVNTSRVAARTLIEPYLGEFMARYPLLRVELVMND 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              +I  D  D  IRL + +    +       I M    +P YL    +P +  +L  HN
Sbjct: 132 GMSNIIADGCDAGIRLGESLAEHMVAVPITPMIEMVVAGSPDYLARHGKPATPADLIAHN 191

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            + +       +  + W  T     G     EP+ S +  N    +++  + G G+    
Sbjct: 192 CLCYRQTTSGAI--YRWEFTSTDIEGHAFEVEPKGSVV-TNDDDGMIRVALQGVGLIQHQ 248

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCY-PEALKNTGKLKAFRNFIFLK 293
           D  +++      LVR+++    P F  Y+ Y P   +   K++A  +F+  K
Sbjct: 249 DLALREQLAAGTLVRVLDAWCKP-FPGYYLYTPSREQMPAKVRALMDFLVEK 299


>gi|119897538|ref|YP_932751.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119669951|emb|CAL93864.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 308

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 138/293 (47%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++A  GSFT AA +L+L+  ++S++++ +E  +G++L  R  R ++LT++G   
Sbjct: 7   ELAFFLLLADKGSFTAAARELNLTPPAVSKRLAQIEQRLGVRLLNRSTRRVSLTDEGELY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +E  +  L      P G LR+  T+  G+  +   +  F   +P++++QL
Sbjct: 67  LEHARRIVADIEDMEASLGSRRAAPKGLLRVNATLGFGRTTIAPIVSAFARQHPEVEVQL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  ID+     D AIR  + +  S L  RKL++      A+P YL     P +  EL
Sbjct: 127 QLTDAPIDLVATGFDLAIRFGE-LPDSRLSARKLMSNRRFLCASPAYLDAHGTPQTPAEL 185

Query: 187 DKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            +H  I     + +  +D    W     R +   ++   L  N    ++ + + G GI +
Sbjct: 186 ARHACI-----LHRQNDDAYGIWRLARGRHVETVKVRGTLSSNDGDVVLGWALDGHGILI 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             ++ +    ++  L  ++ D   P+  +Y  YP       +++AF +F+  +
Sbjct: 241 RSEWDLAKYLESGRLRAVLPDYTLPTADLYAVYPARRNQPARVRAFIDFLLAR 293


>gi|254562813|ref|YP_003069908.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254270091|emb|CAX26078.1| putative transcriptional regulator, lysR family protein
           [Methylobacterium extorquens DM4]
          Length = 301

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 15/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +GSFT  A  L  + S+IS+ I+ LE  + ++LF+R  R L LTE+G   +
Sbjct: 7   LGAFVRAVEAGSFTAGARLLETTPSAISKSIARLERRLKVRLFHRSTRSLALTEEGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + + H +E     + E +   +G++++    +LG+ LL+   + FL  +P ++++  
Sbjct: 67  DRIAPLVHAIEDASGMIGEQAS--NGRIKVTMPAELGRALLEPITRVFLPCHPRMRLEAN 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D AIR   P   + L  R L T+ +   AAP YL     P ++ +L 
Sbjct: 125 LSDRRVDLIHEGYDVAIRAGTP-PDTELTARLLGTLELVLVAAPAYLDRVGTPNTLADLQ 183

Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA-LL 244
           +H    +  G L P  +    W  +V  P G     C   +   ++    V G GI  +L
Sbjct: 184 RHTHARYRLGGL-PYPVRS-AWGPSVALPPG-----CFDADDGEALRIAAVSGLGITQIL 236

Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              +  D  +  L R++ DV   +  VY  +  A     +L+ F +F+    R W
Sbjct: 237 HRSVSHDLASGRLRRVLSDVPLATVPVYALHAYARLAPERLRIFLDFVADTLRAW 291


>gi|110643768|ref|YP_671498.1| transcriptional regulator YhjC [Escherichia coli 536]
 gi|110345360|gb|ABG71597.1| hypothetical transcriptional regulator YhjC [Escherichia coli 536]
          Length = 306

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIRTGA-LPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITF 194
            H ++ +
Sbjct: 210 SHAIVRY 216


>gi|259416988|ref|ZP_05740908.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259348427|gb|EEW60204.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 293

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 137/294 (46%), Gaps = 12/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F ++        A  ++ LS ++++ +++ LE   G +L  R  R ++LT++G +
Sbjct: 4   ENLKLFLLIVEKAGLAAAGREVGLSPATVTERLAALEAHYGARLLTRTTRSISLTDEGRE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + E T+  ++    K SG + ++   DLG+  L   L +F+  +P+I I 
Sbjct: 64  LVTGARRILAETEETEARIKLGVEKISGMIHMSAPSDLGRTQLVPLLDQFMSEHPEIAID 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  ID+     D A+R  + +  S++  RKL        A+P YLK    P+   +
Sbjct: 124 LTLSDGIIDLVGQGIDLALRFGE-LSDSTMKSRKLGANRRIVCASPDYLKRNGTPMHPDD 182

Query: 186 LDKHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
           L  HN  ++ FG        D +W   +D  +   R+   ++ N    I ++C+ G GIA
Sbjct: 183 LSHHNCLIMRFG-----ANTDRDWAFVIDGQMKTKRVLGNRIANDGGLIRRWCLGGQGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              ++ ++      +LV ++E        ++  YP       +++A   F+  +
Sbjct: 238 RKSEWDIRVDLATGDLVEVLEAFSPEPNALHMVYPAGAVQPRRVRALMEFLVAR 291


>gi|307730228|ref|YP_003907452.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584763|gb|ADN58161.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 298

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 140/295 (47%), Gaps = 19/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++RVF  VA   SFT A++ L + +++++  +  +E  +G +L  R  R + LT  G 
Sbjct: 4   FEEMRVFVRVAERQSFTRASDDLQIPRATVTNLVKRMEERLGARLLERTTRTVRLTPDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  + E   S++ P G LR+     L ++ +   L  FL  YP I++
Sbjct: 64  AYYGRCVRLIADLE--EAEGSFSNLAPKGLLRVNLQGTLARHFIVPALPAFLARYPGIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL+   EP   Q
Sbjct: 122 TIGEDDRLVDLVREGIDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPEYLQKYGEPADPQ 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLG 238
            L  H  + +     G  +P    +F+ +   + P+  P  +S   V  Y       V G
Sbjct: 181 ALSAHRAVNYVSSATGRPLPL---EFS-IEGRNTPMLLPGAVSVTGVELYTG---SAVAG 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  +P Y V+D   +  L  I+ D   PS  V   YP+  + + +++ F  ++
Sbjct: 234 LGIVQVPRYRVRDELADGRLKIILADFPPPSLPVSVLYPQNRQLSSRVRVFSQWL 288


>gi|283479182|emb|CAY75098.1| Uncharacterized HTH-type transcriptional regulator yhjC [Erwinia
           pyrifoliae DSM 12163]
          Length = 301

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 14/191 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V    SFT AA+ L + + ++S+ I  LE ++G+KL +R  R L++T +G      
Sbjct: 11  IFVHVVDLHSFTKAADTLQMHRPAVSKSIQQLEDDLGVKLLHRTTRSLSVTAEG------ 64

Query: 70  TSEVYHKLETTQIELQE--SSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             E+Y + +T   ++ E  +SV P+    G+LRI   + L   +L  +L EF  LYP I+
Sbjct: 65  -DEIYQRAKTLLNDVNEMMASVSPTQPPRGRLRIDAPLALTHAILIPSLGEFQALYPQIE 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L   ++  D+  +  DC IRL + +  SS I R++  + M   AAP YL     P++ 
Sbjct: 124 IVLTASDRLTDLVSEGIDCVIRLGE-LVDSSFISRRVGNVRMTTCAAPSYLDKYGTPVTP 182

Query: 184 QELDKHNLITF 194
            +L+ H  I F
Sbjct: 183 DDLEHHKAIHF 193


>gi|257488037|ref|ZP_05642078.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|330985981|gb|EGH84084.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331008708|gb|EGH88764.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 299

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 136/286 (47%), Gaps = 13/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A  GSFT  AE   + +  ++R I  LE  + ++LF R  R + LT +G + +
Sbjct: 1   MQVFAKLAELGSFTKVAEATQIGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60

Query: 68  -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV + +    ETT +  +  S    G+LRI       Q     +LK F   +PDI++ L
Sbjct: 61  ERVKNNLADLAETTSMFDRNGSTL-RGRLRIDIPAAFSQRSFMESLKGFTQAFPDIELAL 119

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+  +  DCA+R+ + +  SSL+ R++    M   AAP YL+    P +++EL
Sbjct: 120 GVTDRTVDLVAEGIDCALRIGE-LPDSSLVVREIGRATMVTCAAPSYLQAFGTPETLEEL 178

Query: 187 DKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             H  ++F  L  +      W   L   D P+  PR   + VN   + +Q  + G GI  
Sbjct: 179 ADHCGVSF--LSGQSNRPLPWHFSLNGDDFPV-LPR-GGITVNESNAYVQCGLAGFGILQ 234

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            P   V+    +  LV ++E        V   YP       +++AF
Sbjct: 235 APGITVESFLASGELVEVLEAFRPLPRPVSVLYPSRTHLAPQVQAF 280


>gi|254504319|ref|ZP_05116470.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222440390|gb|EEE47069.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 302

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 143/299 (47%), Gaps = 14/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D   L +F  VA  G+   A  +  LS ++ ++++  LET VG +L +R  R ++L+
Sbjct: 1   MSIDLKSLELFVRVAALGAIGKAGAEFGLSATAATQRLQALETTVGTQLLHRTTRAVSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G         +   +E    ++Q  +    G LR+A +   G+  +  ++ EFL  +P
Sbjct: 61  TDGEIFLAHAKRILGNVEEALADIQPDAQDIKGDLRVACSASFGRLHIAPHVTEFLEHHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +QL + +  +DI     D AIR+ + +  S+L  RKL        A+P YL+    P
Sbjct: 121 GVTLQLAMSDSVVDIVEQGFDMAIRIGE-LAPSTLKARKLAESPRLLVASPKYLERHSVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            ++++L  HN +   D+         W L + D  + + +I+      S  +I +    G
Sbjct: 180 TTLEDLKHHNCLAREDM-------RTWSLTSADGTLHDVKINGNFSSTSAEAITEAARSG 232

Query: 239 SGIALLPDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA    + + D   N +L+ ++++  ++P + V+   P +   + +++AF +F+  K
Sbjct: 233 LGIARKCAWEIADQLTNGSLIPVLKNHTVSPYWKVFAVRPPSRLPSARVRAFTDFLEAK 291


>gi|152986165|ref|YP_001348791.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961323|gb|ABR83348.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 327

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 128/272 (47%), Gaps = 18/272 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L+ F  V  SGS + AAE + L+ S++SR +S LE ++G  L  R  R + LT
Sbjct: 33  MKANSDELQSFVSVVDSGSISAAAEHMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 92

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++  ++E  +  L      P+G+LRI        + +  ++ EF  LYP
Sbjct: 93  EEGRYFLEQARQILQRMEELEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 152

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ++L  ++  ID+     D AIR+   +  S+L  R L    +H  A+P YL     P
Sbjct: 153 NIQLELNTNDLIIDLLEQRTDVAIRI-GALSDSTLHARPLGASRLHILASPEYLARQGTP 211

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV----DRPIGEPRISCLQVNSYLSIMQYCV 236
             ++ L +H L+ F        E  N    V    DR   +P I C   +S  ++ Q  +
Sbjct: 212 RDVEALAEHTLLGFTQ-----PEHLNRWPVVHVDGDRLDIQPDI-C--ASSGETLRQLAL 263

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFT 268
              GIA L  ++   +     I+E  + P F 
Sbjct: 264 SHQGIACLASFMTDRD-----ILEGRLVPLFA 290


>gi|161520831|ref|YP_001584258.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352987|ref|YP_001948614.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221210121|ref|ZP_03583102.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160344881|gb|ABX17966.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337009|dbj|BAG46078.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221170809|gb|EEE03275.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 315

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G   
Sbjct: 6   NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGENY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YP++ I+L
Sbjct: 66  LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPALTRYHAQYPEVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A+P Y++    P   QEL
Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVRRHGAPARPQEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H  +T   L         W+  ++ P G  +I     +Q N+  S+      G GI +
Sbjct: 186 AAHACLT---LRTPAFPTHEWV--LEGPDGVEQIHVSGPVQTNTAESLALAIRDGIGIGM 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   D   +  LVR++ + I     VY  YP            R +I  K R W
Sbjct: 241 LPLYAAIDALSDGTLVRVLPEHILQKMNVYALYPS-----------RRYIDAKVRTW 286


>gi|26990516|ref|NP_745941.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985492|gb|AAN69405.1|AE016576_15 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 294

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 143/295 (48%), Gaps = 12/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  +GSFT AA++L +S+ S+SR++  LE  +G++L  R  R L  T  G 
Sbjct: 4   YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++  + ++   +    G LR++  +      L   L EFL L+P + +
Sbjct: 64  HYYQSALRLLGEVQQVEHDISGQAQVLRGTLRLSAPLSFAMAHLGCLLTEFLQLHPQVDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++ ++     A+P YL+    P    
Sbjct: 124 EVDLSDRAVDLIGEGYDLALRI-GALEDSSLIARRIASVERVYCASPAYLQARGVPGKPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL  H+ + +G           W           +++  ++ N+   +    + G G+  
Sbjct: 183 ELAAHDCLPYGH-----SRQVQWQFHKGGKTQAIQVTGRMRANNGELLRGAAIAGMGVTY 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP +IV        LV ++++   P+  +   YP+  +    ++ F +  FL+AR
Sbjct: 238 LPTFIVGQALAEGQLVTVLDEWRPPALQLSAVYPQHRQVARPVQGFVS--FLRAR 290


>gi|311103780|ref|YP_003976633.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758469|gb|ADP13918.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           18 [Achromobacter xylosoxidans A8]
          Length = 302

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 134/290 (46%), Gaps = 8/290 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RV+  V    +F+ AA+ L L +S++S  +  LE  +G +L  R  R +  T++G+ 
Sbjct: 5   DLFRVYARVVECANFSRAADTLGLPRSTVSAAVQELEGRLGARLLNRTTRQVAPTQEGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   +E  +   + +SV P G LR+     +G+ ++   L  FL  YP I + 
Sbjct: 65  FYERCLRLVADMEEAENLFRHASVGPGGMLRVDVPGRVGRLIVAPALPAFLEAYPQIDVT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P +  +
Sbjct: 125 LGVTDRAVNLIEEGVDCVLRVGV-LPDSGLVARPIGMLGLINVASPAYLARHGVPSTPDD 183

Query: 186 LDK-HNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L   H+ + +       +  + WL   V R +  P    + VNS  + +  CV G G+  
Sbjct: 184 LAAGHSCVNYASPSTGRLAPWEWLDGGVSRTV--PLRGRVTVNSAEAYIASCVAGLGLIQ 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V+       LV +M D       +   YP+    + +++ F +++
Sbjct: 242 IPAYDVQPQIAAGELVEVMPDHRPAPMPMTLLYPQRRSPSRRVQVFADWL 291


>gi|258545444|ref|ZP_05705678.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
 gi|258519306|gb|EEV88165.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
          Length = 295

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 89/191 (46%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+    +F  +A  GS   AA +L L  S++S  +  LE  +G++LF+R  R + LTE G
Sbjct: 5   DFADFAIFVAIAEEGSLRAAAARLDLRPSTVSHGLRALEARLGVRLFHRTTRSVALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +     LE     + +    P+G++R++    +   +L   L+ F   +PD++
Sbjct: 65  QALLARIAPALSTLEAADEAVNDFRAHPTGQVRLSVPRGIASCVLLPKLRAFAERFPDVR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +  +N  +DI     D  +RL + +    +  R    +     AAP YL  C  P S 
Sbjct: 125 LDIAAENGFVDIVSAGFDVGVRLGESVARDMVALRITPPVQAVIVAAPDYLARCPAPQSP 184

Query: 184 QELDKHNLITF 194
           Q+L  H  I F
Sbjct: 185 QDLAGHRCIGF 195


>gi|222102135|ref|YP_002546725.1| Transcriptional regulator [Agrobacterium radiobacter K84]
 gi|221728252|gb|ACM31261.1| Transcriptional regulator [Agrobacterium radiobacter K84]
          Length = 346

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 5/285 (1%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V  +GSF  AA +L  S    S+ +S LE  +G++L  R  R L+L+E G   + 
Sbjct: 49  RMFIAVIDTGSFAAAATRLGTSAGQASKLVSRLEANLGVQLIMRTTRALSLSEAGRAYYE 108

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  + +     ++ +S  PSG+LRI   +  G   L   L +F   +PDIQ+ +  
Sbjct: 109 RIKTLLEEFDDLDASVRNASGVPSGRLRITAPLTFGTTQLASVLIQFATAFPDIQLDVSF 168

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++  +  D AIR+ +  + SSLI RKL  I +   AAP YL     P     L  
Sbjct: 169 SDRIVNLVDEGFDAAIRIGR-AEDSSLIARKLCAIRVVLVAAPSYLDGRGMPAEPAHLAH 227

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H+ I   +        F   A   +PI       +Q ++  + +     G GIA  P ++
Sbjct: 228 HDCIIDTNFRDPLTWRFKHHAD-PQPILADVHGRIQFSNAEACVAAAEAGLGIARAPSFV 286

Query: 249 --VKDNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +     VR ++ D       +Y  YP       K++   +F+
Sbjct: 287 AGARLRAGAVRPVLSDFEDEPRGLYAVYPPGRHLALKVRVLVDFL 331


>gi|162148506|ref|YP_001602967.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787083|emb|CAP56671.1| putative transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 313

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 135/290 (46%), Gaps = 11/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +     VA +G FT AA  + L+ S +SR ++ LE+ +G++LF R+AR  TLTE G +L 
Sbjct: 11  IETLIAVAETGGFTRAAATMGLTPSGVSRAVARLESRLGVRLFDRNARSTTLTEAGHRLV 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   +E        +S   SG+LR+         LL   L+ FL  +P + + L+
Sbjct: 71  AEVAPLLAGIEEATSSAAGASATVSGRLRVNCDPWFASLLLAPKLRSFLDAHPALTLDLV 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+  +  D AIR  +P+  S LI RKL+   +   A+P Y+     P+  ++L+
Sbjct: 131 TRDTLGDLVSEGFDVAIRFGEPL-PSGLITRKLLEARIVTCASPAYIARHGRPIHPRDLE 189

Query: 188 --KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA-- 242
              H  + F D  P     F+W       I    +   L +N   + +  C+ G G+A  
Sbjct: 190 TGTHECLLFRD--PATGRPFDWEFHRQGEILNISVRGRLILNDVATGLAACIAGLGVAQP 247

Query: 243 --LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             L  D +++    L+ +  D     F ++  +P       K++AF +FI
Sbjct: 248 MTLGIDELLRSG-TLIDLFPDWCDEYFPLHVYHPSRHLPPAKVRAFLDFI 296


>gi|320173208|gb|EFW48419.1| LysR family transcriptional regulator YcjZ [Shigella dysenteriae
           CDC 74-1112]
          Length = 299

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 129/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            +  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DNQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|307728695|ref|YP_003905919.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583230|gb|ADN56628.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 318

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 129/285 (45%), Gaps = 8/285 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSFT  A  L  +  +ISR +S LE  +  +L  R  R L +T+ G + 
Sbjct: 6   NMSVFAKVVEMGSFTSVANHLDTTVGNISRAVSVLEESLDTRLMQRSTRRLVITDAGRRF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   +E  + E +++ ++P G+LR+ +   LG+NL+   +  +   YP++ + L
Sbjct: 66  YDRCVAILTDVELAEAEARDALLEPRGRLRVHSVPGLGRNLVTRAVMAYRSSYPEVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L  +  ++  +  D  I + + +  S+ + + + + H    A+P YL     P   ++L
Sbjct: 126 LLSQRMPNLLEEQLDIGIVITRTLPDSAYVSQNIGSSHCILAASPEYLAAHPAPTCPEDL 185

Query: 187 DKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             H  +  G  D  P   ++++  +     I  P      VN   S+ Q    G+GI LL
Sbjct: 186 IDHQCVLLGTVDYAP---DEWHLESAAGGAIFRPAGPHFSVNDMDSMSQALRDGAGIGLL 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +   D+     LVR++    T    VY  YP       K+K F
Sbjct: 243 AAFSAIDDLRSGALVRVLPGYHTQVRNVYAVYPSRQFVDAKIKRF 287


>gi|260460665|ref|ZP_05808916.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259033770|gb|EEW35030.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 299

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 139/287 (48%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G  L  R  R  ++TE G   
Sbjct: 6   RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R  SE+  ++++    ++ESS    G+++++         +  +L +F   +PDI + +
Sbjct: 66  YRRASEIVREVDSLADAVRESSGDVRGRIKVSAPRTFADAPIGQSLIDFAKQHPDIVLDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D A+R+ + +++SSLI R+L    +   A+P  +     P   Q+L
Sbjct: 126 QLDDRFVDLVEEGFDLAVRISR-LENSSLIARRLAPFSVKLCASPELIAKHGMPTRPQDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I   D   + + ++ +    +  +       ++VNS ++     + G G  +LPD
Sbjct: 185 GHMPCIV--DTNGRGLNNWPFKGDNNDQLSVAVSGPIEVNSPMAARAAAISGLGFCILPD 242

Query: 247 YIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +I   +     LV  ++D I     ++  YP       K++ F +F+
Sbjct: 243 FIAAPDLKSGLLVTALDDRILSGGGIFAVYPHRRYLPAKVRVFVDFL 289


>gi|221196488|ref|ZP_03569535.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203157|ref|ZP_03576176.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221177091|gb|EEE09519.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183042|gb|EEE15442.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 315

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G   
Sbjct: 6   NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGENY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YP++ I+L
Sbjct: 66  LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPALTRYHAQYPEVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A+P Y++    P   QEL
Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVRRHGAPARPQEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H  +T   L         W+  ++ P G  +I     +Q N+  S+      G GI +
Sbjct: 186 AAHACLT---LRTPAFPTHEWV--LEGPDGVEQIHVSGPVQTNTAESLALAIRDGIGIGM 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   D   +  LVR++ + I     VY  YP            R +I  K R W
Sbjct: 241 LPLYAAIDALSDGTLVRVLPEHILQKMNVYALYPS-----------RRYIDAKVRTW 286


>gi|254489583|ref|ZP_05102785.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214041753|gb|EEB82394.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 291

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 140/301 (46%), Gaps = 24/301 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW   R F  V  SGS + A   L ++Q S+SR I  LE  +G KLF R  RG++ TE  
Sbjct: 6   DWTLYRTFAAVLDSGSLSGAGRLLGMTQPSVSRHIDLLEAALGSKLFLRTHRGMSPTEAA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++ R   ++              + + +G +RI+ T  +G   L   L      +P ++
Sbjct: 66  ERI-RPHVDILTASSAAIKRAASRTSEVAGTVRISATEVVGTEYLPPILATIRRAHPALE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L N   D+    AD AIR+ +P Q  SL+ ++L  + +  YA   YL     P+S+
Sbjct: 125 IDLSLSNFVEDLLQRQADIAIRMTEPKQ-LSLVTQRLRDLEVGLYAHRDYLARRGVPVSM 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRIS----CLQVNSYLSIMQYCVL 237
            EL  H+LI            F+      R + +  P +S     L+ +S  +I QY  +
Sbjct: 184 AELLDHDLI-----------GFDTQTAAARALAQRYPALSQAAFALRTDS--NIAQYAAI 230

Query: 238 GSGIALLP--DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +G  + P  + + +  P+LVR++ D I+ S  ++    E L+ T   +A  + + L  R
Sbjct: 231 KAGFGIGPCQEPLARRTPSLVRVLPD-ISASSGIWLVMHEDLRATAVCRAVFDALELGLR 289

Query: 296 D 296
           +
Sbjct: 290 N 290


>gi|254437534|ref|ZP_05051028.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198252980|gb|EDY77294.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 301

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++ F +VA  GS + AA +L  SQ ++ RQI  LE ++   LF R ARG  LT+ G
Sbjct: 9   DWSLIQAFLMVAEEGSLSGAARKLGASQPTLGRQIKALEHQLSASLFTRQARGFELTQTG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +   +    +     S + SG +RI  ++      L   + +  L  P I 
Sbjct: 69  AALVAPARAMRDAMGQITLTAAGQSARMSGTVRITASVMTSLYHLPDIIAKIRLAEPAIG 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+++  +   ++    AD A+R+ +P Q   L+ + +  I +   A+  Y         +
Sbjct: 129 IEIVASDDTRNLLYREADIAVRMYRPTQ-LDLVTQHIGDIPLTICASKSYFARKGSLHGV 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ + + D     ++ F   A ++      ++ C    +Y ++++    G GI  
Sbjct: 188 ADLAHHDFVGY-DTNSALIDGFR-EAGIEVTRDFFKVRCDDHATYWNLVRA---GCGIGF 242

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
               + +D+PN+V I   V  PS  V+    EA+++T +++   + + +  R
Sbjct: 243 AQGSVARDDPNIVAIDPGVAIPSLPVWLVAHEAMRHTPRIRRVWDLLAIGLR 294


>gi|194737184|ref|YP_002116544.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197300687|ref|ZP_02660264.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194712686|gb|ACF91907.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291385|gb|EDY30737.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 300

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 8   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++  
Sbjct: 68  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEFC 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  + M   A+P YL     P ++ +L 
Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRMVNCASPQYLARFGYPENLDDLA 186

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 187 SHAVVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI   P   V++      L+ I+         V   YP
Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275


>gi|330504445|ref|YP_004381314.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918731|gb|AEB59562.1| transcriptional regulator, LysR family [Pseudomonas mendocina
           NK-01]
          Length = 299

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 140/291 (48%), Gaps = 12/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R G F+ AA QL L+ SS++R ++ LE E+G  L  R+ R ++++E G    
Sbjct: 7   LRTFVATVRCGGFSAAARQLGLATSSVTRAVNALEQELGCVLLNRNTRQISVSEAGRDYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+     + +   +  G+L ++  ++  + ++  +L + L  +P +++ L 
Sbjct: 67  ERALAILDALDEADAAVADKDGEVRGRLAVSVPVEFARRIIAPHLGKLLQRHPQLEVSLR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE-L 186
           + ++ +D+  +  D A+RL   I S  ++ +++ +      A+P YL  C  P++  + L
Sbjct: 127 VTDEVVDLLSERVDLALRLGSSIVSDDVVSQRVGSFRRWLVASPQYLA-CNSPITQPDAL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + +    P     F       + +  P    L+ N+   + Q  + G GIALL D
Sbjct: 186 QMHACLQYDYGSPANYWRFE---KDGKTLQVPVSGRLRSNNADILRQAALDGQGIALLSD 242

Query: 247 YIVKDNPN---LVRIMEDV-ITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           ++V+D+ +   L R++ D  + P     T++  Y    + + ++ AF  F+
Sbjct: 243 WLVRDDVDSGKLQRLLPDYDVAPGPHEGTIHLLYLPNHRGSRRIAAFSEFL 293


>gi|260554169|ref|ZP_05826428.1| transcriptional regulator LysR family protein [Acinetobacter sp.
           RUH2624]
 gi|260404711|gb|EEW98222.1| transcriptional regulator LysR family protein [Acinetobacter sp.
           RUH2624]
          Length = 313

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 129/293 (44%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+   
Sbjct: 13  MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ ++  
Sbjct: 73  ERCRQVISMVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+     D ++ L + +  S  + R++ TI     A+P YL+    P S ++L 
Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGIPESPEDLK 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P    D++ L T            L  ++   ++       GIALLP +
Sbjct: 193 SHACLRLVN--PSITPDWHLLNTSGESYQIDIGGQLIADNPELLLDVVQQDMGIALLPMF 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              D   N  L  I+ +  +P   VY   P            R+FI  K R W
Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292


>gi|260222069|emb|CBA31266.1| hypothetical protein Csp_C27680 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 311

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 130/297 (43%), Gaps = 17/297 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  GS T AA    ++ + + R++  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QLESFVSVATRGSLTAAANAEGVAPAIMGRRLDALEERLGVKLLIRTTRRITLTHEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +   +  +    VK +G LRI      G+  +   + +F  L+PD+ I L
Sbjct: 66  LEDCQRIIADVTNAEASVSAGGVKAAGHLRITAPAGFGRRHVAPLVPKFRELHPDVTISL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +DI+ +  DCA+R+   +  SSL+  ++        A P YLK    P +  +L
Sbjct: 126 NLSDRVVDIAGEGFDCAVRVGD-MPDSSLVSVRMADNRRLCVATPAYLKRHGTPKTPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISCLQVNSYLSIMQYCV 236
            + + +T   L     +   W   +    GE               L  +    +  +C+
Sbjct: 185 SRFHCLT---LSSDASQTRGWAFKLPAAKGERADTGEVIYLKPAGPLDCSDGQVLHDWCL 241

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GIA    + V++      LV ++ED   P   +Y  +P+      +++ + +FI
Sbjct: 242 GGYGIAWRSTWEVENEIAAGRLVAVLEDYAAPPNGIYAVFPQRKHMPLRVRLWIDFI 298


>gi|167908016|ref|ZP_02495221.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           NCTC 13177]
          Length = 313

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 84/170 (49%), Gaps = 8/170 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA+ LHL+QS+IS+QI  LE  +G  LF RHARGLTLT +G  LH
Sbjct: 13  LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLTLTPKGGALH 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T   +  L  T  +L      P   L+++         L   L EF  L+P   ++L 
Sbjct: 73  EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
            +   ID   +S D  D AIR   P    +L    L    + A AAP YL
Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFDYGALHVEPLFDESLVAAAAPAYL 177


>gi|167580916|ref|ZP_02373790.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 294

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 135/290 (46%), Gaps = 17/290 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  VAR G+ + AA +L +  +++ R+++ LETE+  +L  R AR  TLT  
Sbjct: 2   FDWENLRHFLAVARVGTLSGAARELGVDHATVGRRVTMLETELQTRLVERFARHCTLTGV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++  + S +       +  +Q    + +G + ++    L  N        F   YP I
Sbjct: 62  GRRMFEIASTMEAGAFAIERTVQAERSQLTGMVVVSAPPVLVTNFFAKETTAFRERYPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L    + + +S   AD A+RL +P ++ +++ R++  +    YAA  Y      P  
Sbjct: 122 QLALSGQAQSVSLSRREADVAVRLVRPKEADNVV-RRIGAMAFALYAARRY------PY- 173

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +QE  +   + + D     M    WL  V    G+  I+C ++    S       G+GI 
Sbjct: 174 LQEPARWEFVGYDDPFDD-MPQQRWLKKV---AGKRAIAC-RLGDITSQYAATRAGAGIG 228

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFI 290
           +LP ++   + +LV +  DV    F   ++      LK +  ++A  +FI
Sbjct: 229 MLPRFLPAASDDLVEL--DVDAEPFVRDIWLVVHRQLKASPPIRAVMDFI 276


>gi|330809257|ref|YP_004353719.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377365|gb|AEA68715.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 307

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +   G F  AA+ L L ++++S  I  LE  +G++L  R  R +  T  G   +
Sbjct: 7   MQVFRRIVELGGFGKAADDLGLPRATVSLLIQQLEAHLGVQLLQRTTRQVRATLDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + + ++   L+  +  L     +P G L++   I  G   +   L +F   YP +Q+ + 
Sbjct: 67  QRSGQLLDDLDDLESSLSAQRSQPRGTLKVDMPIAFGCTWIVPRLPDFYRRYPALQLDIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ + +  +  DCAIR    I   +L+ R +V +H    A+P YL     P  +++L 
Sbjct: 127 FHDRQVHLQREGVDCAIRAGN-IVDQALVARPIVRLHQLTCASPDYLARAGTPGRLEDLA 185

Query: 188 KHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H  I F    G   P   E    +  +  P      S L VN+  + +  C  G G+  
Sbjct: 186 AHRAIGFASGNGRFFPFEFEVAGRVREMQLP------SDLNVNNADAYVTACEAGFGLIQ 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V+       LV++++D   PS+ +   YP   + + +++ F +++
Sbjct: 240 VPRYHVQQQLAEGRLVQVLDDYSVPSWPISAVYPPHRQLSPRVRVFIDWV 289


>gi|291613818|ref|YP_003523975.1| LysR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291583930|gb|ADE11588.1| transcriptional regulator, LysR family [Sideroxydans lithotrophicus
           ES-1]
          Length = 301

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 132/275 (48%), Gaps = 19/275 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  +A   S   AAE L + ++++SR+++ LET +G +L  R  R LTLTE G +    
Sbjct: 13  LFAAIAEQESLVRAAEHLGMPKATVSRRLTNLETVLGQRLLLRTTRRLTLTEFGQEFLDH 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++ T Q  ++   VKP G+LR++   D  +  L   L  F+  YP+I + L L 
Sbjct: 73  CRRVAEEVATAQDFVRSQDVKPHGRLRVSMPEDYAKQNLSRALATFIESYPEIHLDLDLS 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIR+      S+L+ RK+   H   YA+P YL     P   +EL +H
Sbjct: 133 SRLVDLIGERFDLAIRMGTLENDSTLVARKIDEQHFGLYASPIYLGLHPAPKHPEELLQH 192

Query: 190 NLITF----GDLIPKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             +      G LIP  +     NW      P G      L +NS   I Q  + G+GI  
Sbjct: 193 TTLRMLSDQGQLIPWKLSRGKSNWEGV---PPGR-----LALNSIGVIQQLLLDGAGIGA 244

Query: 244 LPDYI----VKDNPNLVRIMEDVITPSFTVYFCYP 274
           LPD      V+ N  LVR++ +   PS   +   P
Sbjct: 245 LPDRFTLEDVRRN-RLVRVLPEWCLPSVPAWAVMP 278


>gi|224825606|ref|ZP_03698711.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602527|gb|EEG08705.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 318

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 131/292 (44%), Gaps = 8/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F    R  SFT AAE+L+L+QS++SRQI  LE  +G  LF R  + L LT  G    
Sbjct: 11  LQCFEAAVRHLSFTRAAEELNLTQSAVSRQIRALEDFIGRPLFERVKQRLVLTVAGEAYA 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V  + E   ++L   S +  G L IA     G   L   L +F   YPDIQ+ L+
Sbjct: 71  AAVQDVLDRAEAATLQLMAYSGE-GGMLTIAMLPTFGSRWLVPRLGDFAARYPDIQLNLV 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +  D     AD AI     +   ++  R L+   +    AP  L        ++E+ 
Sbjct: 130 TQVRPFDFDKVEADVAIHFGPALWPGAICHR-LMGEDIVPVCAPALLGGRPHLDDVREIL 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLGSGIALLP 245
            + L+      P+   D+   A ++   G     +S  +   +  ++Q  V G GIA+LP
Sbjct: 189 AYTLLQH-TTRPQAWNDWLHAAGIEGLTGNEAGLLSGPRFEHFFMVIQAAVAGLGIAVLP 247

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++V++   +  LV  ++  +      Y  +P    +  K++ FR ++  +A
Sbjct: 248 HFLVEEELQSGRLVLALDKPVRSQHAYYLVHPATKADLYKVRVFREWLLEQA 299


>gi|224585164|ref|YP_002638963.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469692|gb|ACN47522.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 309

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 115/248 (46%), Gaps = 4/248 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +K   R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKSLNRSTRSIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L
Sbjct: 66  YQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ + +        E         R I + R      N  ++++++   G+GIA +P 
Sbjct: 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPL 241

Query: 247 YIVKDNPN 254
             V D  N
Sbjct: 242 MWVIDEIN 249


>gi|84386758|ref|ZP_00989783.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84378286|gb|EAP95144.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 305

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  +EQ +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSKVSEQNNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  MLHGAKNVKQAAQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+  D  D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLNNRFVDLVDDGLDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPMQPKD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RIS-CLQVNSYLSIMQYCVLGSG 240
           L +HN + +        E + +L + D          R+S     ++  ++ +  + G G
Sbjct: 183 LVEHNCLQYAYQTTGASE-WQFLHSKDGFTDNDKYIVRVSGSFSTDNATALRKAALGGHG 241

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           +A +P  +V     N  LV I  D++     +Y  YP   +   K+K
Sbjct: 242 VAYVPRCLVYHDIRNGQLVDIFPDLVGKKLGIYAVYPFTRQPPNKIK 288


>gi|260554923|ref|ZP_05827144.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411465|gb|EEX04762.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 310

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 13/255 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQKYHLAASPQYVAKYGTLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236
              EL++H  + +     K  E  N WL  V +P  E    P    L  N+  S+M   +
Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWL--VRKPNEEWVHYPITPLLSSNNAESLMTAAL 237

Query: 237 LGSGIALLPDYIVKD 251
            G GI L PD+++ +
Sbjct: 238 HGMGIVLFPDWLIGE 252


>gi|259418855|ref|ZP_05742772.1| putative LysR substrate binding domain protein [Silicibacter sp.
           TrichCH4B]
 gi|259345077|gb|EEW56931.1| putative LysR substrate binding domain protein [Silicibacter sp.
           TrichCH4B]
          Length = 302

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 132/291 (45%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L    VVA   +FT AA +L LSQS++S+ +  LE  +G++L  R  R ++ T  G
Sbjct: 5   DMADLTALVVVAEERNFTRAAARLGLSQSALSQIVRRLEERLGVRLLARTTRSVSPTPAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  S +   ++ +  EL     KP+G +R+ +     + +L   L   L  YPDI 
Sbjct: 65  EQLVQRLSPMLRDIDLSIAELSNFRDKPAGPIRVTSVEHAAKTILNPALASLLPEYPDIS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+D    DI  +  D  +RL + ++   +  R    I M    AP Y  + R P   
Sbjct: 125 VEIIIDYGLTDIVAERFDAGVRLGESVEKDMISVRISPDIPMAIVGAPEYFASNRPPEDP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L +H  I     +P       W  + D      R    L  NS   I    + G+G+A
Sbjct: 185 EQLVEHRCINLR--LPTSGTLNAWRMSKDNQDIRVRTQGPLIFNSIDLIRDAALRGTGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP   VK   +   LV ++  V TP    Y  Y  + +++    AF+ F+
Sbjct: 243 YLPVDQVKSHLETSQLVHVLA-VNTPPLPGYHLYYPSRRHSS--PAFKLFV 290


>gi|222082378|ref|YP_002541743.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221727057|gb|ACM30146.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 297

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 132/280 (47%), Gaps = 19/280 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VA+  SFT AA +L +SQS++S+ I  LE  +G++L  R  R +  T+ G
Sbjct: 5   NFNDLAAFATVAKERSFTKAAAKLGVSQSALSQTIKALEERLGLRLLTRTTRSVAPTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  +  +E     L E   KP+G +RI        ++LQ  LK FL  YPDI 
Sbjct: 65  ERLLQTVAPRFEDIEAELAALSELREKPAGTIRITAGEHPAISVLQPALKRFLPNYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++I+D    DI  +  D  +R+ + +    +  R    + M    +P Y +    P + 
Sbjct: 125 IEIIVDYGLTDIVAEGFDAGVRIGEQVAKDMIAVRIGPEMRMAVVGSPAYFEKRPAPQTP 184

Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           Q+L  H+ I     T+G L P  +E       V    GE     L  N+    +   + G
Sbjct: 185 QDLTAHSCINMRLPTYGGLFPWGLEKDGREVKVR---GE---GQLVFNNLGMRLHSALDG 238

Query: 239 SGIALLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCY 273
            G+A +P+     Y+ +    L+R++ED   P F  Y  Y
Sbjct: 239 LGVAYMPEDQVLSYVAEG--RLIRVLED-WCPYFPGYHLY 275


>gi|70732520|ref|YP_262283.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346819|gb|AAY94425.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 300

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 142/297 (47%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++  F  V   G  + AA    ++ SS+S+ ++ LE  +G++L  R  R L LT +G 
Sbjct: 9   FAEMETFVAVVECGGLSAAARLRQVTPSSVSKLLARLEARLGVRLLNRSTRQLQLTAEGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +  +  +   L   ++E + SS + P G++R+ T+   G ++L   + EFL LYP + 
Sbjct: 69  GFYENSVRLLADLR--EVEGEASSARAPVGRVRVNTSASFGLHVLAPLVAEFLQLYPQVS 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+  +  +D+  +  D AIR   P+  S LI RKL         +P YL  C  P + 
Sbjct: 127 LDLVHSDALVDLLGEQTDVAIRT-GPLADSQLIARKLGETRGVVVGSPAYLARCGVPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+L+ F     + +  +   A  +  + +P    +Q +   ++    + G+G+A 
Sbjct: 186 EDLAAHHLLGFD--YARALPGWRLGAAGESQLLQPN-GRVQASDGEALRHLALHGAGLAQ 242

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCY-PEALKNTGKLKAFRNFIFLKAR 295
           L  + + D+     LV ++E     P  + Y  Y  +      +++ F +F+ L+ R
Sbjct: 243 LAAFTIADDLASGRLVPVLEAFNQAPLESFYALYVGQGGHVPSRVRVFIDFLALRVR 299


>gi|332141527|ref|YP_004427265.1| probable transcriptional regulator, LysR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551549|gb|AEA98267.1| probable transcriptional regulator, LysR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 301

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 132/286 (46%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F VVA  GSFT AA +L  S   +S+ ++ LE  +  +LF R  R + LTE G +  
Sbjct: 7   LKTFVVVANEGSFTKAAVRLDTSNQLVSKYVAQLEKHLDTRLFNRTTRKIHLTEAGRQCL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  + +   +   + +L   + +  G L ++  +      L G +  F   +P + I L 
Sbjct: 67  QHANHILESINDMESQLGLFNTQAKGTLHVSAPVSFSTLHLAGAIGAFQHAHPHVSINLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ ID+  +  D AIR    + SSSL+ +K+ TI++    +P YLK    PL   +L 
Sbjct: 127 LNDRKIDVIDEGFDVAIRAGH-LASSSLVAKKITTINLALCVSPAYLKKYGRPLHPSDLK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             + + +  +      + + L    +   +     L  N+   +      G G  L P +
Sbjct: 186 PEHYLEYSYV--NYDNNQSELIAALKANAQKSPPKLTANNGEVLTNVAKQGEGYVLQPTF 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IV +      LV I+++ I  S  +Y  YP     + KL+ F +F+
Sbjct: 244 IVGEALKKGELVSILDEYIPQSIALYAVYPHRKLISNKLRVFIDFL 289


>gi|113971672|ref|YP_735465.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113886356|gb|ABI40408.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 300

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 19/297 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG +  
Sbjct: 7   MRSFIEVANCGSFTKAAEHLDLSRLQVSRHIQEIEQWLSLRLLHRTTRSVSLTLQGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V  ++   +      + +  G +RIAT + LGQ+ L   +  F+ L+P + IQL+
Sbjct: 67  QYCQRVLSEVAAMESRAHSHNTELVGSIRIATPVGLGQHSLFDVVDRFIKLHPKVNIQLL 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +    +  +  D A+R   +P    +LI RKL+ I     AAP YL    E L++   
Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARKLMNIDAVLCAAPSYLAQA-ESLTV--- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             ++L++   LI    + +  L      + +P +  L  N    ++   + G GIA LP 
Sbjct: 181 -PNDLLSHNCLIHSSQQHWQLLKEQQSELIKP-MGNLMANEMGVLVSAALRGHGIAYLPC 238

Query: 247 YIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +   NP L       ++     P  T++  Y   L  + +    R FI   A+ W+
Sbjct: 239 DLA--NPYLASGQLQEVLPAYTAPGQTLWAVY---LSRSYQQALVRAFIDCTAQQWQ 290


>gi|308095353|ref|ZP_05905259.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308087299|gb|EFO36994.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
          Length = 304

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 139/294 (47%), Gaps = 18/294 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F    R+ SF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G   
Sbjct: 10  RLHHFLPFGRTSSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGQSF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 VY  + T +  +       SG ++I      G+ +L G + EF   YPDI I +
Sbjct: 70  FVHAKAVYKAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDINIDM 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P    EL
Sbjct: 130 ELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQPIEL 188

Query: 187 DKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            KHN + +        E      D  +  TVD          L  N+  ++    +LG G
Sbjct: 189 TKHNCLVYSYQETGAREWAFKAGDKMYQVTVD--------GNLCTNNSSALRNVALLGQG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +P  +V ++    +L+++ ++       +Y  YP   +   K+K F + ++
Sbjct: 241 VIYVPRVLVYEDLKQGSLIQLFKEETAKCLGIYAVYPYTRQQPEKIKIFIDHLY 294


>gi|241763320|ref|ZP_04761376.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241367472|gb|EER61771.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 309

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 34/270 (12%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V R GSFT AA  L +S  ++S  I GLET +G++L  R  R ++ TE G +L+  
Sbjct: 13  AFVHVVREGSFTRAAALLGVSPGALSHAIKGLETRLGVRLLTRTTRKISATEVGERLYAN 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +  + +++     + E   KP+G +RI        ++L   L + L  YPDI++++ +D
Sbjct: 73  VASRFEEIDAEVAAVSEMRDKPAGTIRITAAEHAADSVLWPKLSKVLHDYPDIRVEINVD 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
               DI     D  +RL   +    +  R    + M    AP Y     +P +  +L +H
Sbjct: 133 YALSDIVSQRFDAGVRLGDQVAKDMIAVRISPDLRMVVVGAPSYFAQHPKPATPHDLAQH 192

Query: 190 NLI-----TFGDLIP----------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
           N I     T G L+P          K   D  W+                 NS   +++ 
Sbjct: 193 NCINLRLPTHGGLLPWDFDRHGKEIKFRVDGQWV----------------FNSTTRMVRA 236

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMED 261
            +   G+A +P+ +V ++     LVR+++D
Sbjct: 237 ALADYGLAFVPEDMVLEHLAAGRLVRVLDD 266


>gi|218891474|ref|YP_002440341.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218771700|emb|CAW27474.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 301

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA +G F  AA Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    
Sbjct: 7   LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   LE     L      PSG LR++  + L    L   +  FL  YPD++++L+
Sbjct: 67  QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+  +  D A+R    +  S L+ R L+ +     AAP YL    +PL  + L 
Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLILEHVLCAAPAYLGQHGQPLRPEALR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F            W    +R  I  P     +V+S L++    + G G++L+P 
Sbjct: 187 EHECIRFS----LSGHADRWTFRKERECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       LV ++ D       ++  YP + +  GK + F +F+
Sbjct: 243 LYVQAELAEGRLVELLADWKADETAIHAVYP-SRQLAGKTRVFLDFL 288


>gi|163741971|ref|ZP_02149360.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384692|gb|EDQ09072.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 293

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 137/294 (46%), Gaps = 12/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F ++        A  ++ LS ++++ +++ LE   G +L  R  R ++LT++G +
Sbjct: 4   ENLKLFLLIVEKRGLAAAGREVGLSPATVTERLAALEAHYGARLLTRTTRSISLTDEGRE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + E T+  ++    K SG + ++   DLG+  L   L +F+  +P+I I 
Sbjct: 64  LVTGARRILAETEETEARIKLGVEKISGTIHMSAPSDLGRTQLAPLLDQFMAEHPEIAID 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  ID+     D A+R  + +  S++  RKL T      AAP YLK    P+   +
Sbjct: 124 LTLSDGIIDLVGQGIDLALRFGE-LSDSTMKSRKLGTNRRIFCAAPDYLKRNGTPMHPDD 182

Query: 186 LDKHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
           L  HN  ++ FG        D  W   +D  +   R+   ++ N    I ++C+ G GIA
Sbjct: 183 LGHHNCLIMRFG-----ANTDQGWAFVIDGQMKTQRVFGNRIANDGGLIRKWCLGGHGIA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              ++ ++ +    +LV ++E        +   YP       +++   +F+  +
Sbjct: 238 RKSEWDIRADLAKGDLVEVLESFSPEPNALQVVYPAGAVQPRRVRTLMDFLVAR 291


>gi|163797634|ref|ZP_02191583.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
 gi|159177109|gb|EDP61671.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
          Length = 313

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 136/290 (46%), Gaps = 11/290 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +WD LR F  + RSG+   AA +L ++ ++++R++S LE  +G ++F R   GL  ++
Sbjct: 7   SINWDDLRFFLAIYRSGTLRGAARELGVNHATVTRRLSTLEAALGARVFDRRPDGLAPSQ 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      V  +L      +      P G +R++    + Q+ L   L  F  L+P 
Sbjct: 67  AGEDLLEAAERVEGELVAMHRRIVGRDDSPRGVVRLSVPPAMLQSFLARELVAFARLHPG 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   +   D++   A+ A+R+   + +  L+  +++      YA+P Y+       
Sbjct: 127 IELDVDASHSYSDLARREAEVAVRMADEV-TEDLVGLRVIRYRKAIYASPAYVATADGGK 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           ++   D H+ I +G  +P      +W    D P   P +    ++ S +  +Q    G G
Sbjct: 186 NLDP-DVHSWIGWGAGLPYP----SW--PRDTPF--PNLPVRHRLFSNILQLQAATEGLG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +ALLP ++  + P +VR+         +++  Y   L+ T +++   +FI
Sbjct: 237 LALLPCFLGDEQPGVVRVPGTGTLDGKSIWVLYHHDLRKTARIRTLIDFI 286


>gi|15596264|ref|NP_249758.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100512|ref|ZP_01364430.1| hypothetical protein PaerPA_01001537 [Pseudomonas aeruginosa PACS2]
 gi|116048996|ref|YP_792202.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892970|ref|YP_002441839.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234203|ref|ZP_04927526.1| hypothetical protein PACG_00038 [Pseudomonas aeruginosa C3719]
 gi|9946982|gb|AAG04456.1|AE004538_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115584217|gb|ABJ10232.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166134|gb|EAZ51645.1| hypothetical protein PACG_00038 [Pseudomonas aeruginosa C3719]
 gi|218773198|emb|CAW29010.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 304

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 9/275 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D L  F V+   GSFT AAE+L  S+  +S++I  LE ++G+ L +R  R L+LT  G
Sbjct: 3   DLDDLAAFAVLHDLGSFTRAAERLGCSKGQLSKRIGVLEQKLGVTLLHRTTRRLSLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +  + E  +  +     +  G++R+   + LG+ L    L++F   +P ++
Sbjct: 63  AALLPEAQALLVQAERARQAVARLQERAEGRVRVTLPVSLGETLFDALLEDFQERHPLLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N   D+  +  D AIR     Q + L+ R L  +     A+P YL    EP   
Sbjct: 123 VELDLYNGLRDLVGEGFDLAIR-SGVEQDARLVARPLFVLQEITCASPAYLARHGEPQRP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242
            EL +   +    L         WL      +   R++    +++ S+++   L G+GIA
Sbjct: 182 AELAERECL----LNSHYSGHEEWLYHRHHRLERVRVAGFLASNHYSLLKKAALAGTGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            LP Y+V D   +  L  ++ D  T S  ++  +P
Sbjct: 238 RLPSYMVHDELGDGRLAWLLRDYQTRSTPMFLVHP 272


>gi|307727765|ref|YP_003910978.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588290|gb|ADN61687.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 297

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 145/302 (48%), Gaps = 35/302 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L L+Q ++SRQI  LE      LF RHA+GLTLT +G  
Sbjct: 8   NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEDYYKFPLFKRHAKGLTLTAEGEL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E + ++E  +I L+ +  +    L++ T +      +   +  F   YP++ +Q
Sbjct: 68  LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQTEYPELHVQ 122

Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +      D+D  ++  D AI         +Q+  L + +L  +      AP  LK+  +P
Sbjct: 123 ITTTWQHDVDFQLEPFDAAIIYGSSPGPDVQAVPLFEERLTPV-----CAPDLLKD--KP 175

Query: 181 L-SIQELDKHNLITFGDLIPKCMEDFN-WLATVDR--PIGE--------PRISCLQVNSY 228
           L ++ +L +H L+       +   D+  WLA V    P+          P    L + + 
Sbjct: 176 LAALGDLARHTLLHPT----RDHRDWKMWLAKVAETDPVNARAIDAEHGPSFDTLDMATN 231

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            ++  + V  S +AL+ + +      LVR  + V+   +  YF YP+++ +  KLK FR+
Sbjct: 232 AALQGFGVAISDLALIDEDVAAR--RLVRPFDTVLKTGWRYYFVYPDSVAHQQKLKLFRD 289

Query: 289 FI 290
           +I
Sbjct: 290 WI 291


>gi|218673662|ref|ZP_03523331.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 300

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 130/264 (49%), Gaps = 18/264 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G F+ AA    ++ S++S+ ++ LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERGGFSAAATVRRMTPSAVSKLVARLEARLGVRLVNRSTRRLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +  +  +   +   + E Q SS  + +G++RI T+   G ++L   +  F+ L+P + + 
Sbjct: 71  YERSIAILADI--AEAERQASSGEEAAGRIRINTSGSFGNHVLAPLVPAFMALHPAVTLD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +K ID+  + AD AIR   P++SSSLI RKL        A+P YL    EP ++ +
Sbjct: 129 IAHTDKVIDLMEERADVAIRA-GPLKSSSLIARKLGATGKIIVASPDYLGRHGEPCTVAD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241
           L +H  I F     + +E +       R  GE    P    +QV    ++    + G+G+
Sbjct: 188 LRRHCRIGFS--YARAIEGWPM-----RESGETVTIPITPGIQVADGEAMRHLALSGAGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDV 262
           A L  + V+   +   L  ++ED 
Sbjct: 241 ARLAAFTVRADIEAGRLAPVLEDA 264


>gi|169795866|ref|YP_001713659.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157441|ref|YP_002319486.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483351|ref|YP_002325562.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301345664|ref|ZP_07226405.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301511009|ref|ZP_07236246.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301597460|ref|ZP_07242468.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|169148793|emb|CAM86661.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|213056601|gb|ACJ41503.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986839|gb|ACJ57138.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
          Length = 310

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 117/255 (45%), Gaps = 13/255 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRI-GALTDSSFHARIFGTQKYHLAASPQYVAKYGTLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236
              EL++H  + +     K  E  N WL  V +P  E    P    L  N+  S+M   +
Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWL--VRKPNEEWVHYPITPLLSSNNAESLMTAAL 237

Query: 237 LGSGIALLPDYIVKD 251
            G GI L PD+++ +
Sbjct: 238 HGMGIVLFPDWLIGE 252


>gi|152983805|ref|YP_001349982.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150958963|gb|ABR80988.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 314

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 136/292 (46%), Gaps = 14/292 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT AA++L L+ + +SR ++ LE  +  +L +R  R + LTE G + 
Sbjct: 6   NMRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLRTRLLHRTTRRIALTEAGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +PSG L++     +GQ+ L   + ++   YP++   L
Sbjct: 66  LMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYPEVGFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L N+  DI  +  D ++ +   +  S  + + +   +    A+P Y+     P    EL
Sbjct: 126 TLANRITDILDEGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFPRLPAEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGI 241
             H  +    L+   M    WL   D P G+  ++C+     QVN+  ++ +  V G GI
Sbjct: 186 SAHRCLR---LVNSVMSLDRWL--FDGPDGQ-ELACINQTHFQVNTADAMTEAVVSGMGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y   +   + +LVR++         VY  YP       K++ +  F+
Sbjct: 240 GALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFL 291


>gi|332368487|gb|AEE61319.1| LysR-type regulator [Serratia plymuthica RVH1]
          Length = 319

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 127/289 (43%), Gaps = 11/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VA  GSF+ AA +L +  SS+ R I  LE+ +   LF R  RGL LT+ G  
Sbjct: 27  EHLPIFLEVALQGSFSAAARKLGMVPSSLVRHIDALESALDATLFIRSTRGLMLTDAGEM 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +   +   + EL   S  P G LRI+     G+  +   L      YP + + 
Sbjct: 87  LKARAAALLSDITDIRAELASLSDVPQGTLRISCLPTFGKTYILPLLPTLAERYPQLFVD 146

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D + +  D AIR+ +  + S L   ++ T      A+P Y+     P  +  
Sbjct: 147 LDLTERQTDPTQELLDAAIRIGEQ-KDSGLYASRIATQRWVMCASPDYIARYGCPGDLNA 205

Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H LI  +    P C     W   +   +       L+ N + +  Q  +LG GI  L
Sbjct: 206 LPEHRLIARYNKQQPAC-----WTQILSGQLLNRCSMVLRCNDFTAQRQAALLGLGITFL 260

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+++V  +     L +++ED       +Y   P A K + +L AF   +
Sbjct: 261 PNWVVGPDIQAGRLHQVLEDPRQEQQGIYLLRPVA-KISARLSAFTRLL 308


>gi|238027757|ref|YP_002911988.1| hypothetical protein bglu_1g21810 [Burkholderia glumae BGR1]
 gi|237876951|gb|ACR29284.1| Hypothetical protein bglu_1g21810 [Burkholderia glumae BGR1]
          Length = 313

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKLR+ +   LGQ+     +  +   YP++Q+ L
Sbjct: 66  LQRCEQILAYVDQAEAEAGDAHARPSGKLRVHSMTSLGQHYAVPMIARYRQRYPEVQVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ + + +  S L+ ++L      A A+  YL+    P   ++L
Sbjct: 126 TLAQRLPDLLDEGFDVSVVVDRHLPDSGLVSQRLGETFSVACASADYLERHGVPQRPEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP------RISCLQVNSYLSIMQYCVLGSG 240
           D H  +  G +    + D +W  T+  P GE       R  C+ V   L++     +G G
Sbjct: 186 DAHACL--GMVATGFVWD-DW--TLVGPDGEEHFPPAQRSFCVNVAEALAVAIREGMGVG 240

Query: 241 IALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  L   I      + VR+M +  +    +Y  YP       K++ + +F+
Sbjct: 241 VLPLHTAIAGLRAGDFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFM 291


>gi|186472108|ref|YP_001859450.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184194440|gb|ACC72404.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 300

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 142/293 (48%), Gaps = 23/293 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AAE L L+Q ++SRQI  LE      LF RHA+GLTLT +G  
Sbjct: 17  NALQIFETVARHRSFTRAAEHLCLTQGAVSRQILALEDYYQFPLFRRHAKGLTLTAEGEL 76

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E + ++E  +I L+ +  +    L++ T +      +   + +F   YPD+ +Q
Sbjct: 77  LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMQFQADYPDLHVQ 131

Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +      D+D  ++  D AI         +Q+  L + +L  +      AP  L++  +P
Sbjct: 132 ITTTWQHDVDFQVEPFDAAIVYGTSAGADVQAVPLFEERLTPV-----CAPQLLQS--KP 184

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           L+   +L +H L+  T      K   D      +D  +G P    L + +  ++  + + 
Sbjct: 185 LAKTADLARHTLLHPTRDHRDWKMWLDHVEARNIDANLG-PSFDTLDLATNAALQGFGIA 243

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            S +AL+ + +      LVR  + V+T     YF YP+++ +  K+  FR++I
Sbjct: 244 ISDLALIEEDVAAQ--RLVRPFDAVLTTGARYYFVYPDSVAHQQKVNLFRDWI 294


>gi|76811532|ref|YP_331949.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|126453831|ref|YP_001064639.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134279786|ref|ZP_01766498.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|217425661|ref|ZP_03457152.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226200325|ref|ZP_03795869.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237810539|ref|YP_002894990.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242315073|ref|ZP_04814089.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254260160|ref|ZP_04951214.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|76580985|gb|ABA50460.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|126227473|gb|ABN91013.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|134248986|gb|EBA49068.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|217391337|gb|EEC31368.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225927647|gb|EEH23690.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506216|gb|ACQ98534.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242138312|gb|EES24714.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254218849|gb|EET08233.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 362

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 145/301 (48%), Gaps = 19/301 (6%)

Query: 2   SFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           +F  D L    VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R + 
Sbjct: 40  AFRMDTLVSMNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVA 99

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            TE G + +    +   +L+     +  +SV P G+LR+ +    G   +   +  +   
Sbjct: 100 PTEAGREYYERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAER 159

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           Y D+ +++ L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL   
Sbjct: 160 YADVTVEITLSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKH 219

Query: 178 REPLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
             P +I +L  H+ I       L+   + +    + V      P    + VN +L  ++ 
Sbjct: 220 GTPATIADLQHHSFIRREPNETLLDAAISEVAAASRV------PMSGNVIVN-HLEGLRV 272

Query: 235 CVL-GSGIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNF 289
            VL G+GIALL   +V ++     LV ++ D + P    +Y  Y      + K+++F +F
Sbjct: 273 AVLGGAGIALLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDF 332

Query: 290 I 290
           +
Sbjct: 333 L 333


>gi|331017322|gb|EGH97378.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 297

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPTEAGEQ 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +L+  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    AP Y ++   PL  Q+
Sbjct: 127 VCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFEHHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W    D      R++     NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           +P  + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 244 VPISLARPHLESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAF 289


>gi|306841126|ref|ZP_07473844.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306845476|ref|ZP_07478049.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306274127|gb|EFM55946.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306288847|gb|EFM60161.1| LysR family transcriptional regulator [Brucella sp. BO2]
          Length = 297

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE G   
Sbjct: 6   RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+I + +
Sbjct: 66  YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P   ++L
Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQRPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I   D   +   ++++       +  P    +++NS ++     + G G  +LP 
Sbjct: 185 TDRPCII--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCMLPA 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +I ++      L+  +++ I     +Y  YP       K++A  +F+
Sbjct: 243 FIAEEEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289


>gi|107028377|ref|YP_625472.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686373|ref|YP_839620.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897541|gb|ABF80499.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652088|gb|ABK12727.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 307

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 16/264 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  V R+GSF+ AA +L +  +++SR+I   E  +G +L +R  R L  + +
Sbjct: 2   LDLNDLALFVQVVRAGSFSEAARRLRMPANTLSRRIDQFEGHIGTRLLHRSTRKLAPSTE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G  L    +    ++   +IE Q +   +P+G +R+A    L + +    L EF   YP 
Sbjct: 62  GLALFERYAPALDRI--FEIERQHADGQEPAGTVRVAAMAGLFEVIKLEWLAEFYARYPR 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I  +LD+   D+  +  D A+R+      S  + R++    M   A+P YL+    P 
Sbjct: 120 ISIDFLLDDTPSDLIAERIDLALRIGIETGGSFRV-RRIAPGTMILAASPAYLERRGTPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           + +EL  H+ +T      + M    W   +  P G   IS      VN    +MQ C+ G
Sbjct: 179 TPRELADHDCLTVSSRQGRSM----W--RLQGPRGTQEISIDSRFSVNDMRVVMQACLAG 232

Query: 239 SGIALLPDYIVK---DNPNLVRIM 259
            GIAL+P  +     D   L R++
Sbjct: 233 LGIALVPQVLAAAAIDEGKLARVL 256


>gi|291281174|ref|YP_003497992.1| LysR substrate binding domain protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|290761047|gb|ADD55008.1| LysR substrate binding domain protein [Escherichia coli O55:H7 str.
           CB9615]
          Length = 300

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 131/278 (47%), Gaps = 13/278 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 12  NYNELYLFMQVVREGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDI+
Sbjct: 72  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 132 LELINESRFVDIIEERFDAGVRLGPEVSQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 191

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNW-LATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
            +L  H  I   F D        + W L   D+ I  +P       +SY+   +   LG 
Sbjct: 192 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHQPEGQWAFSDSYME-AEAARLGL 245

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           G+A +P  +V D+     L+R+++        ++  YP
Sbjct: 246 GLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 283


>gi|240949166|ref|ZP_04753513.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           NM305]
 gi|240296469|gb|EER47105.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           NM305]
          Length = 299

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 144/296 (48%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+QL +S +  S+ ++ LE  + ++L +R  R +T TE G  
Sbjct: 5   NAISLFCKVIETQSFTQAAQQLDISLAMASKLVAQLEEHLNVRLLHRTTRKITPTEAGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    + ++L+     +   S   +GKL  +  +D G   +  +L +FL  YP I++ 
Sbjct: 65  YYQRCQPILNELKEADDSINNISENLTGKLSFSLPMDFGSRFVAPHLGKFLEAYPYIELH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ +D+  +  D  +R+ + ++ SS++ +K+   H    A+P YL     P +IQ+
Sbjct: 125 LEFNDRRVDVVSEGFDLVLRVGR-LEDSSIVAKKIAESHQIIVASPEYLAIHGTPRTIQD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           LD+H  + + +       DF++     R   + RI     N+  S++Q      GI  +P
Sbjct: 184 LDQHTCLLYEN---HQTWDFSFGEETLRYKAKGRIYS---NNGYSLVQMAKDHQGIINIP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +V     N  L+ I+E +      +   YP     + K+K F +F+    ++ K
Sbjct: 238 KCLVTKELKNGELIPILEHLDQRKLDISLLYPNRRYLSPKVKVFIDFLATLMKEQK 293


>gi|78066424|ref|YP_369193.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967169|gb|ABB08549.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 305

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 131/291 (45%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R+F  +  +GS T A++   L+   +S  +  LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRIFTRIVETGSLTRASDTTGLTTPRVSAMLRTLEQHLGCRLLNRTTRRLSLTEDGQSY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V  +++  +  +  +   P G+L++     + + +L   L  FL   PDI I+L
Sbjct: 66  YERCIAVLREIDDMEASVSRARSAPRGRLKVNLPPAMAKQILVPALPAFLASNPDITIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ ID+  +  DC +R+   +  S LI +++  +     AAP Y++    P ++ +L
Sbjct: 126 GATDRHIDVVGEGVDCVVRI-GALDDSGLIAKRIGDLTTCTCAAPSYIERYGVPETVGDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
            +H  I    + P       W   +D   GE RI    + + VN   + +   V G G+ 
Sbjct: 185 TRH--IAVNHVSPDTGRPRIWDFVID---GEARIAQMCASVAVNDADTYIACGVAGIGLI 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               Y+V     +  L  ++ DV +P   +   YP       KLK F +++
Sbjct: 240 KTSLYLVTPYLASGELREVLTDVNSPPRPISVVYPPNRHIPAKLKIFVDWL 290


>gi|116048800|ref|YP_792400.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584021|gb|ABJ10036.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 314

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 136/292 (46%), Gaps = 14/292 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT AA++L L+ + +SR ++ LE  +  +L +R  R + LTE G + 
Sbjct: 6   NMRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALTEAGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +PSG L++     +GQ+ L   + ++   YP++   L
Sbjct: 66  LMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYPEVGFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L N+  DI  +  D ++ +   +  S  + + +   +    A+P Y+     P    EL
Sbjct: 126 TLANRITDILDEGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFPRLPAEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGI 241
             H  +    L+   M    WL   D P G+  ++C+     QVN+  ++ +  V G GI
Sbjct: 186 SAHRCLR---LVNSVMSLDRWL--FDGPDGQ-ELACINQTHFQVNTADAMTEAVVSGMGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y   +   + +LVR++         VY  YP       K++ +  F+
Sbjct: 240 GALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFL 291


>gi|313106021|ref|ZP_07792280.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310878782|gb|EFQ37376.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 304

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 9/275 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D L  F V+   GSFT AAE++  S+  +S++I  LE ++G+ L +R  R L+LT  G
Sbjct: 3   DLDDLAAFAVLHDLGSFTRAAERVGCSKGQLSKRIGVLEQKLGVTLLHRTTRRLSLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +  + E  +  +     +  G++R+   + LG+ L    L++F   +P ++
Sbjct: 63  AALLPEAQALLVQAERARQAVARLQERAEGRVRVTLPVSLGETLFDALLEDFQERHPLLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N   D+  +  D AIR     Q + L+ R L  +     A+P YL    EP   
Sbjct: 123 VELDLYNGLRDLVGEGFDLAIR-SGVEQDARLVARPLFVLQEITCASPAYLARHGEPQRP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242
            EL +   +    L         WL      +   R+S    +++ S+++   L G+GIA
Sbjct: 182 AELAERECL----LNSHYSGHEEWLYHRRHRLERVRVSGFLASNHYSLLKKAALAGTGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            LP Y+V D   +  L  ++ D  T S  ++  +P
Sbjct: 238 RLPSYMVHDELGDGRLAWLLRDYQTRSTPMFLVHP 272


>gi|261339735|ref|ZP_05967593.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318564|gb|EFC57502.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 310

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 127/281 (45%), Gaps = 20/281 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  + +F+  A +  +S S +SR I  LE  +G +LFYR+ R +  TE G    
Sbjct: 12  LLIFIDVYETQNFSVVARREGISASQVSRVIHQLEDALGQQLFYRNTRAMIPTESGHLFI 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   LE  + E+ E + +PSG +RI   +  GQ  +   L      YP + I+L 
Sbjct: 72  RHARAIAGNLEDARREMDERAGEPSGVIRINGPVFFGQKHIAPGLAGLAARYPRLSIELT 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  ID   D AD   R+   +  SS   R       H  A+P YL+    P   ++L 
Sbjct: 132 LTDDFIDPHRDAADLIFRI-GALTDSSFHARGFGQQFYHLAASPAYLRQYGAPQGPEDLS 190

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIA 242
           +H+ + + G   P       WL  V +P  E    P    +  N+  +++   + G GI 
Sbjct: 191 RHHCLVYRGSSGPN-----RWL--VRQPGHEWTHYPVAPLMTSNNAETLLVAALGGMGIV 243

Query: 243 LLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEA 276
           L PD++V D   +  LV ++ D    + T   ++   YP A
Sbjct: 244 LFPDWLVSDKLKSGELVALLTDRECSINTEPQSIAAIYPNA 284


>gi|254295876|ref|ZP_04963333.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157805909|gb|EDO83079.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 314

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 142/292 (48%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 1   MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   +  +   Y D+ +++ 
Sbjct: 61  ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYADVTVEIT 120

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +L
Sbjct: 121 LSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPATIADL 180

Query: 187 DKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242
             H+ I       L+   + +    + V      P    + VN +L  ++  VL G+GIA
Sbjct: 181 QHHSFIRREPNETLLDAAISEVAAASRV------PMSGNVIVN-HLEGLRVAVLGGAGIA 233

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           LL   +V ++     LV ++ D + P    +Y  Y      + K+++F +F+
Sbjct: 234 LLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFL 285


>gi|170721262|ref|YP_001748950.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759265|gb|ACA72581.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 294

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 137/290 (47%), Gaps = 10/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  +GSFT AA++L +S+ S+SR++  LE  +G++L  R  R L  T  G 
Sbjct: 4   YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEGRLGVRLLNRSTRRLDATPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++  + ++   +    G LR++  +      L   L EFL L+P + +
Sbjct: 64  HYYQSALRLLGEVQQVEHDISGQAQALRGTLRLSAPLSFAMAHLGCLLTEFLRLHPQVDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++  +     A+P YL+    P    
Sbjct: 124 EVDLSDRPVDLIGEGYDLALRI-GALEDSSLIARRIAGVERVYCASPAYLQARGVPQRPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            L +H+ + +G           W  T   R         ++ N+   +    +   G+  
Sbjct: 183 MLAEHDCLPYGH-----SRQVQWQFTQGGRSQAIAVAGRMRANNGELLRDAAIAAMGVTY 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +IV     +  LV +++D   P+  +   YP+  +    ++ F  F+
Sbjct: 238 LPTFIVGQALADGRLVSVLQDWTPPALQLSAVYPQHRQVARPVQGFVEFL 287


>gi|317406656|gb|EFV86826.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 308

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 100/187 (53%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A +GSF  AAE+L+L++S++ + I+ LE  +G +LF+R  R  +LT+ G   +
Sbjct: 14  IEVFVQAAEAGSFALAAERLNLTRSAVGKSIARLEARLGARLFHRTTRQQSLTDAGQAYY 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +L   + EL      P G+LR++  +  G++ +   L+E    +P +QI++ 
Sbjct: 74  DRCVRALAELYDAEAELDSGRRSPQGRLRVSAPVVFGRHCVAPVLRELAARHPQLQIEIS 133

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  D  IR+     S+SL+ R+L    M   A+P Y+     P ++ E+ 
Sbjct: 134 FNDRVVDLIEEGYDLGIRIGALPDSASLVARRLGLQTMGIGASPAYIAAHGRPQTLDEMR 193

Query: 188 KHNLITF 194
           +H  + +
Sbjct: 194 QHVGVAY 200


>gi|313107434|ref|ZP_07793624.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|310880126|gb|EFQ38720.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 303

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 140/290 (48%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  +   G+F  AA+ L L ++S+++ I  LE  +G++L  R  R ++LT  G 
Sbjct: 4   FQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +         P G+LR+     LG+  +   L EF   YP++++
Sbjct: 64  AYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPELEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL  +++ +D+  + ADC +R+ + +  SSL+ R L  +     A+  YL+    P  + 
Sbjct: 124 QLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLQQVTCASAAYLERHGHPRQLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  + +    P     F++  +VD R    P  S + VN+  + +  C  G G+  
Sbjct: 183 ELGGHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P Y V     + +L +++ + + PS  ++  YP   + + +++ F +++
Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWL 290


>gi|294625560|ref|ZP_06704186.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600125|gb|EFF44236.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 303

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 17/290 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +R+F  +    SFT AA  + + +S+ ++ I+ +E  +G++L  R  R +  T  G 
Sbjct: 4   FDAMRLFVRIVERRSFTAAANDMQIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+    +   ++  +   +   V P G LR+     L ++ L   L  F   YP IQ+
Sbjct: 64  LFHQRCMRILDDVDDAEGGFR--GVAPKGLLRVEVQGTLARHFLLPGLPAFFAHYPQIQL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R   P++ S L+ R++  +     A P YL+    P  ++
Sbjct: 122 VMSESDRWVDLVEEGIDCVLRY-GPLRDSELVARRVAMLERLTCATPQYLQRFGLPAQLE 180

Query: 185 ELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L+ H +     IT G + P   +    L T   P      S L V    S +    LG 
Sbjct: 181 ALEHHRMVGLRSITTGVVTPLEFQTAQGLRTFALP------SPLSVTGTESYLAGIRLGL 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GI+ +P + V  +     LV I+ D   PS  V   Y  A + + +++ F
Sbjct: 235 GISQVPRFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVF 284


>gi|237731338|ref|ZP_04561819.1| LysR family transcriptional regulator [Citrobacter sp. 30_2]
 gi|226906877|gb|EEH92795.1| LysR family transcriptional regulator [Citrobacter sp. 30_2]
          Length = 297

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 128/288 (44%), Gaps = 14/288 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L    +VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLYYLIIVARERSFTRAAAKLGVSQSALSHAIRGLEERLDVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN----LKEFLLLY 119
            +L    S  +  +ET  + L +   + +G +R+     LG++ LQ      L+ FL  Y
Sbjct: 65  ERLINSISPRFDDIETELLALTDVRQRVAGNIRLT----LGEHALQSTVWPALEPFLQAY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ +++ +DN   DI     D  IRL + +    +  R      M    +P Y     +
Sbjct: 121 PDVNVEMTIDNSLTDIVTGRYDAGIRLGEQVAKDMVAVRIGPDWRMVVVGSPVYFARHGK 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P +  +L  H+ I     +P     + W    D      R+   L  N+    +   + G
Sbjct: 181 PKTPHDLQNHSCINM--RMPTLGGLYAWEFAKDGQDLRVRVEGQLIFNNLPPRISAAMAG 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            G+A +P+  V+       L +++ED   P    Y  YP   ++T   
Sbjct: 239 MGLAFVPEDTVEQAVAEGALEKVLEDWCEPFPGYYLYYPSRKQHTAAF 286


>gi|259909148|ref|YP_002649504.1| transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96]
 gi|224964770|emb|CAX56287.1| transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96]
          Length = 297

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 14/191 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V    SFT AA+ L + + ++S+ I  LE ++G+KL +R  R L++T +G      
Sbjct: 7   IFVHVVDLHSFTKAADTLQMHRPAVSKSIQQLEDDLGVKLLHRTTRSLSVTAEG------ 60

Query: 70  TSEVYHKLETTQIELQE--SSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             E+Y + +T   ++ E  +SV P+    G+LRI   + L   +L  +L EF  LYP I+
Sbjct: 61  -DEIYQRAKTLLNDVNEMMASVSPTQPPRGRLRIDAPLALTHAILIPSLGEFQALYPQIE 119

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L   ++  D+  +  DC IRL + +  SS I R++  + M   AAP YL     P++ 
Sbjct: 120 IVLTASDRLTDLVSEGIDCVIRLGE-LVDSSFISRRVGNVRMTTCAAPSYLDKYGTPVTP 178

Query: 184 QELDKHNLITF 194
            +L+ H  I F
Sbjct: 179 DDLEHHKAIHF 189


>gi|93006100|ref|YP_580537.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis
           K5]
 gi|92393778|gb|ABE75053.1| transcriptional regulator, LysR family [Psychrobacter
           cryohalolentis K5]
          Length = 303

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 138/288 (47%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   GSF++AA  L LS   +S+ +S LE ++  +L  R  R ++LTE GS 
Sbjct: 5   DAMRAFVAVVTEGSFSNAANTLQLSPQLVSKYVSKLEEQLNSRLLNRTTRKVSLTEAGSH 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++   ++  + +L      P G LRI+  +      +   + +F + YP +++ 
Sbjct: 65  YFGHAQQILLSIDDMESKLGGLQQNPKGVLRISAPVSFALKHMAKLITDFQIHYPLVKVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +DI  +  D A+R+ + ++SSSLI +K+  I +   AAP YL     P   ++
Sbjct: 125 LQLTDRKVDIVEEGFDVALRIGQ-LKSSSLIAKKVAPIRVMLCAAPDYLNKHGTPTQPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + +H  + +  +     +D   L          + S L+ N+   ++   + G+GI L P
Sbjct: 184 IAEHRYLHYSYMNMDGKDDIYQLLKAKY---LKQGSELRSNNGDVLVDAAIAGAGIVLQP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +I+ +   +  LV ++  +   +  +Y  Y        K++ F +F+
Sbjct: 241 TFIISEALSSGKLVVVLPKLEPEALGLYAVYAHRKLLPHKVRCFIDFV 288


>gi|254419420|ref|ZP_05033144.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
 gi|196185597|gb|EDX80573.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
          Length = 301

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 127/288 (44%), Gaps = 16/288 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F+ V R GS + AA +L +SQ SI+R I  LET +G KLF R  RGL+ T+   
Sbjct: 7   WDLYRTFHAVLREGSLSGAARRLDMSQPSIARHIDALETALGAKLFLRTPRGLSPTDAAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESS------VKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           +L      +  +L  T   L+ ++         SG +RI+ +  +    L   L      
Sbjct: 67  EL----KPLAERLAATSAALRRTAEGGGGGGALSGTVRISASEVVAVEHLPPILARMRQA 122

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P + ++L   N   D+    AD A+R+ +P Q  +L+ R +  + +  +A   YL    
Sbjct: 123 HPGLALELSPSNALDDLLQRKADVAVRMVRPEQ-QALVSRHVGALAIGLHAHRDYLARRG 181

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++ +L  H+LI +    P           + R         L+V+S ++ +     G
Sbjct: 182 TPRTLADLKDHDLIGYDVETPAIRAAVQQYPALSRD-----AFALRVDSDVAQLAAIRAG 236

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GI +    +    P+LVR++ D    +   +      L+   + +A 
Sbjct: 237 FGIGICQTVVAARQPDLVRVLPDAFHMALETWIVMHGDLRGNARCRAV 284


>gi|300313769|ref|YP_003777861.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300076554|gb|ADJ65953.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 7/245 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L+  +S +SR+++ LE  +G++L  R  R + +TE G
Sbjct: 3   DLNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           S       E         +E+ E +  +P+G+LR+++ + +    L   L  FL  +PD+
Sbjct: 63  SAFF-THCEAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHVFLAPLLARFLCAHPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D+  +  D A+R+R  ++ SSL+ R   T      A+P Y++      +
Sbjct: 122 RLELELSNRRVDVIGEGFDVAMRVRSTLEDSSLVVRTFGTSQQVLAASPAYVRAHGPFDT 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSG 240
           +Q L     +  G L  +      W L   D  + E   +   V   +  +MQ  + G G
Sbjct: 182 VQSLQGQRGLGPGGLPGQAQ---RWRLQGPDGEVAEIDYAPAMVTDDMQLVMQTAIGGVG 238

Query: 241 IALLP 245
           +ALLP
Sbjct: 239 LALLP 243


>gi|30064575|ref|NP_838746.1| putative DNA-binding transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|56480295|ref|NP_709039.2| putative DNA-binding transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|30042834|gb|AAP18557.1| putative LYSR-type transcriptional regulator [Shigella flexneri 2a
           str. 2457T]
 gi|56383846|gb|AAN44746.2| putative LYSR-type transcriptional regulator [Shigella flexneri 2a
           str. 301]
 gi|332752447|gb|EGJ82836.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-671]
 gi|332754325|gb|EGJ84691.1| HTH-type transcriptional activator aaeR [Shigella flexneri 2747-71]
 gi|332999320|gb|EGK18906.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-272]
 gi|333000301|gb|EGK19884.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-218]
 gi|333014648|gb|EGK33995.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-304]
 gi|333014689|gb|EGK34035.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-227]
          Length = 303

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 111/238 (46%), Gaps = 4/238 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP +   L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSANLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H+ + +        E         R I + R      N  ++++++   G+GIA +P
Sbjct: 180 SHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGAGIAYVP 234


>gi|294625710|ref|ZP_06704331.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294666297|ref|ZP_06731547.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292600014|gb|EFF44130.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292603948|gb|EFF47349.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 298

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA    F+ AA+ L  S +S++RQ++ LE  +G +L  R  R ++LT  GS 
Sbjct: 5   DAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAGSA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   L+  +  +   +++P+G LR+   +  G   L   L  F   YP +++ 
Sbjct: 65  YYQRCLQLLADLDDLEATIGAQALEPAGMLRVNAPVSYGIERLGALLPGFRARYPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L ++ +D+  +  D AIR+ R+P  +  LI R+L  + + A A+P YL     P    
Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APMLIARQLGKVRILACASPAYLARAGTPQHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           +L  H  + +    P   +     A    P G+  +     L+ N+   +    + G GI
Sbjct: 183 DLAGHECLLY-HYSPNGDD-----ARFQGPDGDIDVRLHGGLRANNGHVLNAAALAGQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + PD++ + +     LVRI+ +       ++  Y        K+++F +++
Sbjct: 237 VMQPDFLAEPHIAAGRLVRILPEYALGEIGIFAVYTSRSHLAPKVRSFIDYL 288


>gi|262278167|ref|ZP_06055952.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258518|gb|EEY77251.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 308

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 135/293 (46%), Gaps = 12/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F +VA + SF+ AA    +S +++SR I+ LE  +   LF R  R + LT QG 
Sbjct: 10  FSSVELFCLVAENESFSKAALHAGVSPAAVSRSIARLEKHLATPLFVRTTRQVRLTPQGK 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +  +++   + +L+    +PSG +RI+     G   +   L +F   YP I++
Sbjct: 70  MYFEECKQALNQILEAEQQLKNQKQQPSGLVRISVPTPYGHYRILPLLAKFSKQYPAIEV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L NK++D   +  D AIR R     S+LI R+L    +   A+P YLK    P SI+
Sbjct: 130 DVQLTNKNVDFIAEGYDLAIRGRL-FADSNLIARQLEQAELIVVASPQYLKQFGIPQSIE 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240
           +L  H  I F  ++P   ++  WL   +  I E     +I CL  +  L  +      +G
Sbjct: 189 DLQHHQCIQF--VLPSTGKNVQWLFNSNHQIIEYQSTGKIRCL--DDILGTITLAKHSAG 244

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     +IV+    N  L+ I+      S      YP     +  ++ F +F+
Sbjct: 245 LLQTYRFIVEKELKNGELIEILTKFSGTSRPFSLLYPLKKHESFHIRVFIDFL 297


>gi|148975138|ref|ZP_01812062.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965062|gb|EDK30312.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 298

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 137/304 (45%), Gaps = 35/304 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA   SFT AAE L +S+  +SR +  +E  +  +L +R  R ++LT  G    
Sbjct: 7   MRSFVEVANCASFTQAAEHLDMSRLQVSRHVQEIEGWLKQRLLHRTTRKVSLTAAGEVAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++     +   SG +RIA  I L Q++L   +++F   +P+I ++L 
Sbjct: 67  QRCEKILHETAELEVTSLNQTDDLSGTIRIAAPIGLTQHMLLDVVEQFTERHPNITVELF 126

Query: 128 -------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
                  L ++ IDI++ Y D      +P    SLI RKL+ I     A+  YL    EP
Sbjct: 127 ASDRFTQLVDERIDIALRYTD------QP--DDSLIARKLMVIDSVVCASQAYLDKHGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRIS-CLQVNSYLSIMQYCV 236
            +++ L +HN          C    N   W    D       +S  ++ N    + +   
Sbjct: 179 ETVEALRQHN----------CFRHLNVSKWDFVKDNQHYSVEVSGTIKANDVGVLTRAAQ 228

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+  LP  +      N  L+RI++D ++PS  ++  Y   L  + +L   R FI   
Sbjct: 229 HGKGVVRLPCDLANPLIANGQLIRILDDFVSPSSVLWAVY---LSRSYQLPIVRQFIDFA 285

Query: 294 ARDW 297
           A  W
Sbjct: 286 AEAW 289


>gi|170734986|ref|YP_001774100.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821024|gb|ACA95605.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 330

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 18/247 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F   AR  SFT A ++L+++QS++SRQ+  LE ++ I+LF+RH R LTLT++G +
Sbjct: 17  DFLRGFECAARHLSFTRAGQELNVTQSAVSRQVKALEEQLRIELFHRHIRSLTLTDKGRE 76

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   S     LE+   +L  S  + S  + ++TT+      L   L  F   YPDI ++
Sbjct: 77  LYDAISFALSDLESVVGKLSSSVGQRS--ISLSTTVSFAALWLIPRLGSFRASYPDIDVR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  D+       A+R   P  S+     L + ++V     A  +P  +    + +
Sbjct: 135 VSATSEIEDLKRKRLHLAVRYAGPYTSTDDTDVLFRERVV-----AVCSPSLMTAAGDAV 189

Query: 182 SIQ--ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236
           S+Q  +LDKH L+   D  P+    ++  + + + +G PR+     L  + Y  ++Q  V
Sbjct: 190 SMQPADLDKHVLLHLDD--PRGEWPWHGWSHLLKALGVPRLRPAGALHFSQYDQLVQAAV 247

Query: 237 LGSGIAL 243
            G GIA+
Sbjct: 248 DGHGIAI 254


>gi|21233154|ref|NP_639071.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770094|ref|YP_244856.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115001|gb|AAM42983.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575426|gb|AAY50836.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 308

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 140/296 (47%), Gaps = 14/296 (4%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           MS D  W+  R F  V  +GS + AA QL ++Q ++  +I+ LE  +G  LF R   GL 
Sbjct: 1   MSHDIAWEDQRTFLAVLDTGSLSAAARQLGVTQPTVRARIASLEAALGTTLFTRAITGLI 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEF 115
            T +   L      +      + + ++ +S  P   +G +RI+ +  +G  +L   L   
Sbjct: 61  PTSEARGLEAAARTMA---RASAMFVRLASAPPGLVAGTVRISVSDFVGVEVLPAMLARL 117

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
             ++P I  +L+L N   D+     D A+R++ P Q  +L+ RK+  I +  +A   Y+ 
Sbjct: 118 RQVHPHIVTELVLSNTPADLLEQEVDIAVRMQPPTQ-GALVARKVGAIALGLFAHRDYIA 176

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P +++ L +H LI       +   D +    +   +   R++  + +S+ + +   
Sbjct: 177 RRGAPATVEALLEHELIGPA----RNRADLSLARALHPHLLRDRLAT-RTDSHPAQLALA 231

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G GIA+    I + +P LV+++ +V  P+ T +    E L++  +++A  N + 
Sbjct: 232 RAGLGIAIAQCPIAQADPCLVQVLPEVALPALTTWIVTHEDLRDVPRIRATFNHLV 287


>gi|330818506|ref|YP_004362211.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327370899|gb|AEA62255.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 310

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 11/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  +    SFT AA    + +S+ ++ I  +E  +G++L  R  R +T T  G  
Sbjct: 5   DAMRLFVRIVERRSFTAAANDTDIPRSTATQVIRQMEDRLGVRLLQRTTRTVTPTLDGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    +   L   +  L     +P G LR+     L ++ L   L EF   +P++QI 
Sbjct: 65  YYRSCMSILDDLHEAEAAL--GGKQPRGMLRVDVQGTLARHFLLPALPEFFRRFPELQIT 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ I++  +  DC +R    +Q + L+ RK+ T+     AAP YL+    P SI+ 
Sbjct: 123 MSESDRFINLVEEGVDCVLRY-GVVQDTELVARKVATLERLTVAAPAYLEVHGRPDSIEA 181

Query: 186 LD--KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L+   H ++    L    +    +++  D R +  P    L V    S     +LG GI+
Sbjct: 182 LETGTHRMVGIRTLSTGRITPLEFVSEGDLRHVVLP--DTLSVTGPESYRDSTLLGLGIS 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P + ++ +     LV ++E    PS  V+  YP   + + +++AF
Sbjct: 240 QMPRFHIEADLASGRLVTLLESTPPPSMPVWLLYPHRRQLSPRVRAF 286


>gi|309778713|ref|ZP_07673486.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308922421|gb|EFP68045.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 304

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 3/186 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R+F  V  +G FT AA  L+ SQ  +S+ I+ LE  +G++L +R  R   LT +G + 
Sbjct: 8   EMRIFKAVVEAGGFTAAAHALNASQPFVSQTITHLERRLGVQLLHRSTRKQRLTSEGERF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  Q E Q  + +P+G LR++     G + +   L  FL  YP + ++ 
Sbjct: 68  LASCHDLLEAVE--QAEAQIRATEPTGDLRVSVPQAFGIDQIVPALPGFLSTYPKLTVRF 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +++  D  D A+R+ + +Q SSL  RKL  +     AAP YL     P++ Q L
Sbjct: 126 SLSDSLVNLIEDNFDVAVRMGR-LQDSSLRSRKLCELQRIVVAAPSYLARHGMPVTPQGL 184

Query: 187 DKHNLI 192
           D+H  +
Sbjct: 185 DRHQCL 190


>gi|221065427|ref|ZP_03541532.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710450|gb|EED65818.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 291

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 134/274 (48%), Gaps = 11/274 (4%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SF  A   L +S S++ + ++ LE ++G++LF+R  R + LT++G+  H     +  +L 
Sbjct: 18  SFAEAGRALGISASAVGKNVARLEQQLGLRLFHRTTRQVRLTQEGTLFHERCRRILDELH 77

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
             +  +Q ++  P G+LR++    +G   L   L EF   YP++++ L  ++  +D+   
Sbjct: 78  DARAAMQAAAEAPRGRLRVSLPT-IGYRFLLPVLPEFQARYPEVELDLDFNDHLVDVVEA 136

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D  IR    +  S L+ R+L        A+P YL     PL+  +L +H+ + +  L 
Sbjct: 137 GLDVVIR-SGELADSRLVARRLGPFRFILAASPTYLAERGLPLTPADLARHSSLRYRFLN 195

Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNL 255
              +E++        PI       L  N+  +++   V G G+A +PD++ +D      L
Sbjct: 196 SGKLEEWTLPGLPAMPI------SLVCNNMEAMLGAAVSGLGLAYMPDFLARDALARGEL 249

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +++   +T S      +P + + + K++AF +F
Sbjct: 250 QQVLAQQLTHSGQFSALWPSSRQLSPKVRAFVDF 283


>gi|187930592|ref|YP_001901079.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187727482|gb|ACD28647.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 298

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 127/287 (44%), Gaps = 20/287 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R +  LE  +G+ LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTVGRHVDALERALGMSLFLRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L          LE T   L  ++        G +RI  +  +   +L   L +    YP
Sbjct: 68  SLR----PFAESLEATSAALLRAASSQGEGVRGTVRITASEVVAVEVLPPILADLHAAYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L+  N+  D+    AD A+R++ P Q   L+ R +  I +  +A   YL     P
Sbjct: 124 ELTLELVPSNRMEDLLRREADIAVRMQPPSQ-GVLVARHIGAIELGIFAHRRYLAQRGTP 182

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +++EL  H LI +      +        W+        +     L+ +S L+ +     
Sbjct: 183 STVEELAAHTLIGYDKENAFLRSMRAQLPWV--------QRNRFALRTDSDLAAIAALRA 234

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G GI      +V++N +LVR+  D I+ +   +    E L+++ + +
Sbjct: 235 GFGIGFCQIGLVRNNADLVRLFGDQISITLDTWLAMHEDLRDSPRCR 281


>gi|145631392|ref|ZP_01787163.1| DNA topoisomerase I [Haemophilus influenzae R3021]
 gi|144983051|gb|EDJ90555.1| DNA topoisomerase I [Haemophilus influenzae R3021]
          Length = 305

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 137/289 (47%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  + I+L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKIRLLQRTTRKIMPTEAGMM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     + + +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSESYDLALRIGY-MEDSSLVSRKIGTTTVHFVASPNYLEANGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GIA L
Sbjct: 184 LEHHN----GLLYKNSMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I+    +   L+ ++ +       ++  YP       K++AF  F+
Sbjct: 240 PKFILGSAFEKGELIELLPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|301046176|ref|ZP_07193350.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300301833|gb|EFJ58218.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
          Length = 299

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 128/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R    +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTHSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|257093324|ref|YP_003166965.1| LysR family transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045848|gb|ACV35036.1| transcriptional regulator, LysR family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 295

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 135/293 (46%), Gaps = 9/293 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VA  GSF+  A QL +++S ++RQI+ LE  +G+KL  R  R L LT  G+ 
Sbjct: 5   EAMHLFMRVAELGSFSAVALQLGVARSVVTRQIAALENHLGVKLMARSTRRLALTSAGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  + + ++T + ++ E  + P G +RI+  +  G   L   L +F   +P++ + 
Sbjct: 65  YLEKCRVILNLVDTAEADVAEERLTPRGNIRISLPLSYGIKRLAPLLLDFSQRHPEVSLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ I++  +  D AIR+ + +     + RK+ +  +   AAP YL     P    E
Sbjct: 125 MDYSDRRINLIEEGIDLAIRITRRLDPGD-VARKIGSSRLLVVAAPDYLARHGRPQHPAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  + +           +W   VD  +    + S +  N+   + +   LG GI L 
Sbjct: 184 LAHHECLGYS----GSGAAQSWHFLVDGQLQTYLLRSRINANNGDVLSEGAALGLGITLQ 239

Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PD+IV D   + R   I+ D   P   +Y   P     + +++   +F+   A
Sbjct: 240 PDFIVADLLAVGRVEQILADFPIPELGIYAMLPGNRHVSHRVRVLMDFLAANA 292


>gi|221200466|ref|ZP_03573508.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206146|ref|ZP_03579160.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221174158|gb|EEE06591.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221179807|gb|EEE12212.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 318

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 10/231 (4%)

Query: 17  SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76
           +GSF  AA QL ++ +++S+ ++GLE  +G++L  R  R L LTE+G    R        
Sbjct: 19  AGSFAAAARQLGVTSAAVSKNVAGLEKALGVRLMNRTTRTLKLTEEGEAFLRHARIALET 78

Query: 77  LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136
           L+     +     +P+G++RI+T+   G N +   L   L  YP + +++  D++ IDI 
Sbjct: 79  LDAAIDTVSARRAEPAGRVRISTSAAFGHNHVLPALPALLARYPALSVEVDFDDRVIDIV 138

Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT--- 193
            D  D A+R    I  S+L+ R +  ++    A+P YL N   P +   L  H LI    
Sbjct: 139 RDGYDIAVRGGN-IPDSALVTRPICRLNTVLVASPDYLANHGVPETPDALHAHRLIARRF 197

Query: 194 -FGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             G + P     D   + T+D P G+   + L +++  S++Q      GIA
Sbjct: 198 LSGQVAPWNFTGDDKSITTID-PSGK---AMLTLSAPESLVQAACDSVGIA 244


>gi|172064841|ref|YP_001815553.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997083|gb|ACB68000.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 345

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 144/289 (49%), Gaps = 15/289 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--- 66
            F  VA  GSFT AAE L + + ++SR +  LE ++  +LF R  R   LT +G +    
Sbjct: 35  AFVAVASEGSFTKAAELLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGRRFFEN 94

Query: 67  -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H+  +++   +    +EL++    P G +RI++ +  G+ ++   L++F   YPDI I 
Sbjct: 95  CHQGVAQIVEAM-NDMLELRQG--PPRGLIRISSAVGFGRKIVAPLLEKFAQAYPDIIID 151

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD++ ID+  +  D + R  + I+ SS+I R+L+ + M   AAP Y+     P  I +
Sbjct: 152 LLLDDRPIDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVARHGLPQRIDD 210

Query: 186 LDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           LD+H  I F     +  E +FN    + + +   R   L  N    +++  + G+GIA +
Sbjct: 211 LDQHECINFRFASGRVFEWEFNVDGRMQKYLPTSR---LTFNDADLVLRAVLNGAGIAQM 267

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y ++D   +  LV  +   +      Y CY        +++ F +F+
Sbjct: 268 AGYQIRDHLASKELVVALAKHVPEDRGHYICYLSRQHLPTRIRIFVDFM 316


>gi|27380659|ref|NP_772188.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27353824|dbj|BAC50813.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 297

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 126/277 (45%), Gaps = 14/277 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR  SFT AA QL +SQS++S  +  LE  +G++L  R  R +  TE G +
Sbjct: 7   NDLLAFLAVARERSFTRAAAQLGVSQSALSHTVRALEERLGLRLLTRTTRSVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R     + +++     L      P+G +RI T     Q +L   L   L  YPDI+++
Sbjct: 67  LLRNIGPRFAEIDAELSALTALRETPAGTVRITTGEHAAQTILWPTLARLLPRYPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L++D    DI  +  D  +RL + +    +  R    + M    +P Y     +P   Q+
Sbjct: 127 LVVDYGLTDIVAERYDAGVRLGEQVAKDMIAVRIGPEMRMAVVGSPAYFTARGKPKRPQD 186

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +HN I     T+G L     E       V R  G+     L  N+ L  M   + G G
Sbjct: 187 LTEHNCINLRLPTYGGLYAWEFEKRGHAMKV-RVDGQ-----LVFNTGLLRMNAALAGLG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           +A +P+ +VK    +  L+R++ D   P    +  YP
Sbjct: 241 LAYIPEDLVKREIADGRLIRVLADWCAPFAGYHLYYP 277


>gi|17547217|ref|NP_520619.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17429519|emb|CAD16205.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 308

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 131/287 (45%), Gaps = 26/287 (9%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W+    F  V  +GSFT AAE L + +SS S  +S LE  +G++L  R  R L LTE
Sbjct: 3   TMEWNDWETFCRVVEAGSFTAAAEALGIPKSSASAAVSRLEASLGVRLLTRTTRQLRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P+
Sbjct: 63  AGSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQHLTEPVCQTLARFPN 122

Query: 122 IQIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +QIQ+ +  +  D ++  Y    + + + +  SSL+ R++V I    YAAP  L   R P
Sbjct: 123 LQIQVHISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAG-RAP 181

Query: 181 LSI-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---------NSYLS 230
           L+   +L     ++  D       D +W   V RP G P     +V         N+ + 
Sbjct: 182 LAAPADLSGWPCLSGPD-------DASW---VFRPAGAPAAEPFEVPIQPRLQTLNAEMR 231

Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
             +  V G G+A +   +     +   LVR++ D       VY   P
Sbjct: 232 -ARAAVRGLGVARMARSVGDAEVETGRLVRVLSDYEPTPLRVYALMP 277


>gi|15596073|ref|NP_249567.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|254239229|ref|ZP_04932552.1| hypothetical protein PACG_05420 [Pseudomonas aeruginosa C3719]
 gi|9946775|gb|AAG04265.1|AE004522_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126171160|gb|EAZ56671.1| hypothetical protein PACG_05420 [Pseudomonas aeruginosa C3719]
          Length = 314

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 136/292 (46%), Gaps = 14/292 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT AA++L L+ + +SR ++ LE  +  +L +R  R + LTE G + 
Sbjct: 6   NMRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALTEAGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +PSG L++     +GQ+ L   + ++   YP++   L
Sbjct: 66  LMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYPEVGFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L N+  DI  +  D ++ +   +  S  + + +   +    A+P Y+     P    EL
Sbjct: 126 TLANRITDILDEGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFPKLPAEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGI 241
             H  +    L+   M    WL   D P G+  ++C+     QVN+  ++ +  V G GI
Sbjct: 186 SAHRCLR---LVNSVMSLDRWL--FDGPDGQ-ELACINQTHFQVNTADAMTEAVVSGMGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y   +   + +LVR++         VY  YP       K++ +  F+
Sbjct: 240 GALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFL 291


>gi|294650642|ref|ZP_06727996.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823433|gb|EFF82282.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 295

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 138/311 (44%), Gaps = 55/311 (17%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++VF   AR GSF  AA +L++S ++IS QIS LE E+GIKLF R  R +TLT++G K
Sbjct: 9   NSIKVFEATARLGSFKAAAHELNVSPTAISHQISELEKELGIKLFIRGFRTVTLTDEGKK 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V+  +  +L+ T +EL       S  + I+TT       L   L  F   YPDI++Q
Sbjct: 69  LAEVSIRLISELKQTLLEL----TTYSKHITISTTNAFAAMWLVPQLHVFKTQYPDIEVQ 124

Query: 126 LILDNKDIDISMDYA-DCAIRL----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +  D++ IDI  D   D AIR     +K IQ S +I  +        Y      +N    
Sbjct: 125 VKADDRLIDIDHDLKFDMAIRYGFVDKKHIQVSKIINDQFGLFATQQYWRDREEENSDVK 184

Query: 181 LSIQELDKHNLIT----------FGDLIPKC--MEDFNWLATVDRPIGEPRISCLQVNSY 228
           L + +    NL+           FG + P     ED N                      
Sbjct: 185 LLVTQWKNDNLLKHDQSDILLQRFGQVCPTVEYFEDEN---------------------- 222

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV----YFCY----PEALKNT 280
             ++Q  + G G+A +   +V+       ++E   +PSF +      CY    P+   N 
Sbjct: 223 -QVIQAALAGQGVAYVSKILVQQTVTQGWLLE---SPSFQIGGMDNLCYYSVIPKRNLNH 278

Query: 281 GKLKAFRNFIF 291
             + AF+N+I 
Sbjct: 279 PSVIAFQNWIM 289


>gi|149376184|ref|ZP_01893949.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
 gi|149359589|gb|EDM48048.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
          Length = 297

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 8/274 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F   A S SF  AA +L +S  +++R +  LE   G  LF+R+ R + +T  G K
Sbjct: 6   EMLRIFCTAAESRSFKEAANRLGISPQAVTRAVKELERLQGELLFHRNTRHIQVTLVGEK 65

Query: 66  LHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +  E    + E  Q    +S  +  G++RIA  +  G   L   L E   ++P + I
Sbjct: 66  FAAIAKERLRAVDELFQTSAPDSGNELQGRVRIAAPVGFGHQCLMPALMELSTVHPQLDI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  D  IR+   ++ S  I R+L  I+++  A+P  +     P SI+
Sbjct: 126 DLTLSDERVDVVDEKIDIGIRI-GFMRDSRFIARQLAKINLYVVASPDLIDRVGRPASIE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+  +L   G +     + + W+ ++DR    P I+  +     + +     G G A +
Sbjct: 185 DLN--HLPVTGLVDRNTGKLWPWVFSMDRQ-WMPSITRFRSADAEAELMGVQNGLGFAQI 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           PD++ +D      LVR++E+     + +Y   P+
Sbjct: 242 PDFLAQDLLRQEKLVRVLEEAEPVPWDLYIYRPQ 275


>gi|187928323|ref|YP_001898810.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|241662901|ref|YP_002981261.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|309782177|ref|ZP_07676907.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|187725213|gb|ACD26378.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240864928|gb|ACS62589.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
 gi|308919243|gb|EFP64910.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 309

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 131/288 (45%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + L   +  +    VK SG LR+      G+  +   + +F+  +PD+ + L
Sbjct: 66  LEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFIETHPDVSMTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL+    P  +++L
Sbjct: 126 DLGDRVVDLVNEGFDCAIRL-GDLPDSSLVSIRLWENRRVVVAAPSYLERRGVPTQVEQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
             HN + FG           W+          ++S  ++      + ++C+ G G+A   
Sbjct: 185 STHNCLAFG---ASANVQRGWVFQQGGKAVTVKVSGTMECTDGAVLREWCLQGYGLAWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 242 WWEVGHDIATGKLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289


>gi|107100334|ref|ZP_01364252.1| hypothetical protein PaerPA_01001359 [Pseudomonas aeruginosa PACS2]
 gi|218893155|ref|YP_002442024.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254245163|ref|ZP_04938485.1| hypothetical protein PA2G_06051 [Pseudomonas aeruginosa 2192]
 gi|296390770|ref|ZP_06880245.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313105759|ref|ZP_07792022.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|126198541|gb|EAZ62604.1| hypothetical protein PA2G_06051 [Pseudomonas aeruginosa 2192]
 gi|218773383|emb|CAW29195.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310878524|gb|EFQ37118.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 314

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 136/292 (46%), Gaps = 14/292 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT AA++L L+ + +SR ++ LE  +  +L +R  R + LTE G + 
Sbjct: 6   NMRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALTEAGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +PSG L++     +GQ+ L   + ++   YP++   L
Sbjct: 66  LMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYPEVGFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L N+  DI  +  D ++ +   +  S  + + +   +    A+P Y+     P    EL
Sbjct: 126 TLANRITDILDEGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFPKLPAEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGI 241
             H  +    L+   M    WL   D P G+  ++C+     QVN+  ++ +  V G GI
Sbjct: 186 SAHRCLR---LVNSVMSLDRWL--FDGPDGQ-ELACINQTHFQVNTADAMTEAVVSGMGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y   +   + +LVR++         VY  YP       K++ +  F+
Sbjct: 240 GALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFL 291


>gi|296389631|ref|ZP_06879106.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 311

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 143/303 (47%), Gaps = 28/303 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E  +  + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR- 178
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +   R 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGHRL 180

Query: 179 -EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLS 230
             P+ +++L           +     D    AT+  P G       EPR   L V+ ++ 
Sbjct: 181 EHPVDLEDL---------PFLGAIHNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVL 228

Query: 231 IMQYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
             +  V G G+ LLP+ Y  ++  + +LVRI+     P  T+   Y   L  + ++ A R
Sbjct: 229 RKKAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIR 285

Query: 288 NFI 290
             I
Sbjct: 286 ALI 288


>gi|153840561|ref|ZP_01993228.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149745776|gb|EDM56906.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 239

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 101/187 (54%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT  G + +
Sbjct: 10  IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTHAGERFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++   I   + + +  G +R+      +G++++   + EF+  YP + I L
Sbjct: 70  HDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYPSVSIDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID+  D  D A R+ + +  +  + RKL+T+ M   A+P Y++    P   +EL
Sbjct: 130 DFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMPKHPKEL 188

Query: 187 DKHNLIT 193
            +H  +T
Sbjct: 189 AEHRTLT 195


>gi|226942541|ref|YP_002797614.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226717468|gb|ACO76639.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 301

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 123/250 (49%), Gaps = 13/250 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F    RS  F+ AA +L ++ SS++R ++ LE+E+G  L  R+ R +++TE G + +
Sbjct: 7   LKMFVETVRSAGFSAAARRLGIATSSVTRMVTALESELGTVLLNRNTRNVSVTEAGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E     + +   +  G+L  +  ++ G+ ++   L   L  +P ++I LI
Sbjct: 67  AHAVAILKAIEEADATITDRGSEARGRLSASVPVEFGRRVIAPRLGRLLDRHPALEISLI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  + AD A+RL   + +  ++  ++        A+P YL      +  ++L 
Sbjct: 127 LSDEIIDLLGERADVAVRLGTSMLNDDVVSLRIGEFRRWVVASPEYLAGRDRLVHPEQLV 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242
           +H+ +TF     +    F          G+ RI       L+ N+   + +  + G G+A
Sbjct: 187 EHDCLTFAYATTEPHWSFRK--------GDERIRVDVRGRLRSNNADILREAALAGRGVA 238

Query: 243 LLPDYIVKDN 252
           LL D++V ++
Sbjct: 239 LLSDWLVGED 248


>gi|200387091|ref|ZP_03213703.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199604189|gb|EDZ02734.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 300

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 8   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 68  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 128 SNDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 187 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI   P   V++      L+ I+         V   YP
Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275


>gi|33598565|ref|NP_886208.1| LysR family regulatory protein [Bordetella parapertussis 12822]
 gi|33603512|ref|NP_891072.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
 gi|33574694|emb|CAE39348.1| LysR family regulatory protein [Bordetella parapertussis]
 gi|33577636|emb|CAE34901.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
          Length = 304

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 141/294 (47%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  VAR  SF  AAE+L +S + +S+++  LE  +G++L +R  R +++T +G +
Sbjct: 8   EDLRVFLHVARLSSFAAAAEELRVSTAYVSKRLRVLEGVLGVRLLHRTTRRVSVTREGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      V   ++    E+  +   P G LR++ +   G+N++   L   +  +P +Q++
Sbjct: 68  VFLWAQRVLDNVDQLMQEVAATRAVPRGLLRVSCSFGFGRNVVGPMLSRLVERFPALQVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R+L   H    AAP YL     P + +E
Sbjct: 128 LEVFDRLVDVASEGFDLDVRVGDDI-APHLIARRLADNHRLLCAAPDYLARRGTPRTPEE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGI 241
           L  H+ +   +       D  +     R   E R       L  N+    +++ V G GI
Sbjct: 187 LAGHDCLVIKE------RDHPFGVWTLRAGAENRTIKVTGPLSANNGEIAVRWAVDGRGI 240

Query: 242 ALLPDYIVKDNPNLVR--IMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
            L   +   D   L+R  ++  ++ P      ++  YP  L+N+ K++    F+
Sbjct: 241 VLRSHW---DVAPLLRDGLLVPLLAPWRQDANIWAVYPSRLENSAKVRVAVEFL 291


>gi|85712372|ref|ZP_01043422.1| transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
 gi|85693815|gb|EAQ31763.1| transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
          Length = 300

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 132/274 (48%), Gaps = 8/274 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F   A S SF  AA +L +S  +++R +  LE   G  LF+R+ R + +T  G K
Sbjct: 6   EMLRIFCTAAESRSFKEAANRLGISPQAVTRAVKELERLQGELLFHRNTRHIQVTLVGEK 65

Query: 66  LHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +  E    + E  Q  +  S  +  G++RIA  +  G   L   L E   ++P + I
Sbjct: 66  FAVIAKERLRAVDELFQTSVPNSGNELQGRVRIAAPVGFGHKCLMPALLELSTIHPQLDI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  D  IR+   ++ S  I R+L  I+M+  A+P  +     P SI+
Sbjct: 126 DLTLSDERVDVVDEKIDIGIRI-GFMRDSRFIARQLTKINMYVVASPDLINRVGRPASIE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+  +L   G +     + + W+ ++DR    P I+  +     + +     G G A +
Sbjct: 185 DLN--HLPVTGLVDRNTGKLWPWVFSMDRQ-WTPSITRFRSADAEAELMGVQNGLGFAQI 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           PD+  +D      LVR++E++    + +Y   P+
Sbjct: 242 PDFSGQDLLRQEKLVRVLEEIEPVPWDLYIYRPQ 275


>gi|254786262|ref|YP_003073691.1| HTH-type transcriptional regulator YcjZ [Teredinibacter turnerae
           T7901]
 gi|237686911|gb|ACR14175.1| putative HTH-type transcriptional regulator YcjZ [Teredinibacter
           turnerae T7901]
          Length = 307

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 130/279 (46%), Gaps = 10/279 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L +F VVA   SFT AA QL LSQS++S  +  LE  VGIKL  R +R ++ T
Sbjct: 8   MREDLSDLALFMVVAELQSFTRAATQLELSQSAVSHGVRRLEASVGIKLLNRTSRRVSTT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G KL          +     EL+     P G +RI+T+    + LL   L   +  YP
Sbjct: 68  DAGEKLLAALRPGLGMINARIEELRLLGDAPRGLVRISTSKPALRTLLWPKLSAVVRDYP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQI+L L+++  D++ +  D  +RL++ +    +       I + A AAPHY +    P
Sbjct: 128 EIQIELNLESRLTDLAENRFDAGVRLKEFVSPDMIAVPIGPPIRLAAVAAPHYFQQHGTP 187

Query: 181 LSIQELDKHNLIT--FGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVL 237
               +L++H+ +   F    P    +F     V  + I  P I      S ++I +    
Sbjct: 188 EHPDDLEQHDCLALRFHAQAPVYDWEFEKAGQVLVKKITGPFIFS---ESGIAI-EAAKA 243

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           G GIA + +  V D   N +L R++ D   P      CY
Sbjct: 244 GHGIAFVTEPEVIDGIENGSLRRVLADWCPPFDGYVLCY 282


>gi|170682485|ref|YP_001745791.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|300936732|ref|ZP_07151630.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|170520203|gb|ACB18381.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
 gi|300458147|gb|EFK21640.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
          Length = 323

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + +   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|320638552|gb|EFX08260.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. G5101]
 gi|320644013|gb|EFX13093.1| LysR substrate binding domain protein [Escherichia coli O157:H-
           str. 493-89]
 gi|320649295|gb|EFX17846.1| LysR substrate binding domain protein [Escherichia coli O157:H-
           str. H 2687]
 gi|320657004|gb|EFX24839.1| LysR substrate binding domain protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662435|gb|EFX29824.1| LysR substrate binding domain protein [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320665361|gb|EFX32448.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. LSU-61]
          Length = 294

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 131/278 (47%), Gaps = 13/278 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDI+
Sbjct: 66  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVSQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNW-LATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
            +L  H  I   F D        + W L   D+ I  +P       +SY+   +   LG 
Sbjct: 186 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHQPEGQWAFSDSYME-AEAARLGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           G+A +P  +V D+     L+R+++        ++  YP
Sbjct: 240 GLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 277


>gi|290511378|ref|ZP_06550747.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289776371|gb|EFD84370.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 303

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V   GSFT AA +L LS   + + I+ LE+++  +L  R+ R  +LT+ 
Sbjct: 2   DKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         V  ++   +  ++   + P+G LR++     G +++      FL  +P +
Sbjct: 62  GRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPAV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D+  +  D AIR+ + I    L+ R L    M   AAP YL     P +
Sbjct: 122 RVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPGT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYC 235
            ++L  H           C+    W A        ++  +   R + L+ N   ++ Q  
Sbjct: 181 PEDLADH----------LCLSHTVWTARNEWRLPGMEGEVRWKRDAILRCNDGYALRQAA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + G+G+ + P+ ++ D   + +LVR++E        V+  + +  +   KL  F
Sbjct: 231 IAGAGLLMQPEVLLADALASGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQF 284


>gi|107101981|ref|ZP_01365899.1| hypothetical protein PaerPA_01003028 [Pseudomonas aeruginosa PACS2]
          Length = 303

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 140/290 (48%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L+ F  +   G+F  AA+ L L ++S+++ I  LE  +G++L  R  R ++LT  G 
Sbjct: 4   FQALQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +         P G+LR+     LG+  +   L EF   YP++++
Sbjct: 64  AYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPELEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL  +++ +D+  + ADC +R+ + +  SSL+ R L  +     A+  YL+    P  + 
Sbjct: 124 QLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPRQLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  + +    P     F++  +VD R    P  S + VN+  + +  C  G G+  
Sbjct: 183 ELGGHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P Y V     + +L +++ + + PS  ++  YP   + + +++ F +++
Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWL 290


>gi|154247265|ref|YP_001418223.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161350|gb|ABS68566.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 302

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 123/276 (44%), Gaps = 11/276 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VA   SFT AA +L  SQS++S  I  LE  VG++L  R  R +  T+ G
Sbjct: 5   DLADLNAFLAVAEERSFTRAAARLGTSQSALSHTIRRLEARVGVRLLTRTTRNVAPTQAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          + +    L E   +P+G +RI T     + ++   L+  L  +PDI 
Sbjct: 65  ERLLGTLRPALESIGSELTALAELRSRPAGTIRITTAEHAARTVIWPALERLLPDHPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D+   DI     D  +RL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELSIDSSFTDIVAGRFDAGVRLGEALAKDMVAVRIGPDLRMAVVGAPAYFAAHPIPRTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           Q+L +HN I    L    +  + W   ++R   E R+     L  ++   I++    G G
Sbjct: 185 QDLAEHNCINLRLLSSGAL--YAW--ELERDGREIRVRVEGQLAFDNIAMIVRAATAGFG 240

Query: 241 IA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCY 273
           +  ++ D +  +  +  LVR++ED   P+F  Y  Y
Sbjct: 241 LGFVMEDQVAAEIADGRLVRVLED-WCPAFAGYHLY 275


>gi|261867371|ref|YP_003255293.1| LysR protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412703|gb|ACX82074.1| LysR protein [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 297

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 11/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++LR F   A+ GSFT AA +L++S S++S  I  LE ++ IKLF R  R +  TE G +
Sbjct: 6   NELRTFITAAQEGSFTKAAAKLNVSTSALSHSIRKLEEQLNIKLFNRTTRSIATTEAGEQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +    ++  +E     L        GKLRI     +  ++L   L  F   YP+++++
Sbjct: 66  LFQNLLPLFESIEDNLNALSTFRNTLKGKLRINGNDHVFLSILWDKLMAFAEQYPEMELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D K +DI     D  IRL   +    +  R    + M     P Y      P  +++
Sbjct: 126 LTSDTKFVDIVAGRFDAGIRLGSDVAQDMIAVRLSDKMQMAVVGTPEYFAKKATPKKVED 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240
           L +H  +     +P       W    A    P+ +  P+      NS+L I +  ++G G
Sbjct: 186 LGEHECLLVR--LPTSDSIMTWEFQPAKKSAPVVKFHPKGQLCFNNSHL-ISRAVLVGKG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +A LP   ++   D+  LV ++ +V       +  YP   +N+   KA 
Sbjct: 243 LAWLPIDTMQPYLDSGELVEVLSNVAISYDGYHLYYPNRRQNSPLFKAL 291


>gi|257487513|ref|ZP_05641554.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330891603|gb|EGH24264.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330988776|gb|EGH86879.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331008741|gb|EGH88797.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 298

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 128/257 (49%), Gaps = 15/257 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGS + AAE++  + S +SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  ++E+ +  L  S   P+G+LRI        + +  ++ EF   YP
Sbjct: 61  EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  ID+     D AIR+   +  S+L  R L +  ++  A+P YL+    P
Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRI-GVLPDSTLHARSLGSCLLNIVASPAYLQRHGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W---LATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + ++L +H L+ F  +     E  N W    A  DR   +P IS     S    +++ V
Sbjct: 180 KTAEDLAQHVLVGFTHV-----ESLNQWPLRHAEGDRLSIKPAISA----SSGDTLRHLV 230

Query: 237 L-GSGIALLPDYIVKDN 252
           L G GIA L D++  D+
Sbjct: 231 LEGVGIACLSDFMTNDD 247


>gi|59802027|ref|YP_208739.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA
           1090]
 gi|194099598|ref|YP_002002729.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae NCCP11945]
 gi|239999798|ref|ZP_04719722.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae 35/02]
 gi|240014954|ref|ZP_04721867.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae DGI18]
 gi|240017402|ref|ZP_04723942.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae FA6140]
 gi|240081544|ref|ZP_04726087.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae FA19]
 gi|240113823|ref|ZP_04728313.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae MS11]
 gi|240116557|ref|ZP_04730619.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID18]
 gi|240118781|ref|ZP_04732843.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID1]
 gi|240122023|ref|ZP_04734985.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID24-1]
 gi|240124321|ref|ZP_04737277.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID332]
 gi|240126532|ref|ZP_04739418.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae SK-92-679]
 gi|240128994|ref|ZP_04741655.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae SK-93-1035]
 gi|254494580|ref|ZP_05107751.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|260439682|ref|ZP_05793498.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae DGI2]
 gi|268595608|ref|ZP_06129775.1| LysR family transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268597640|ref|ZP_06131807.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268599891|ref|ZP_06134058.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602226|ref|ZP_06136393.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268604492|ref|ZP_06138659.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268682947|ref|ZP_06149809.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268685112|ref|ZP_06151974.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687374|ref|ZP_06154236.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291042924|ref|ZP_06568665.1| LysR family transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|293398068|ref|ZP_06642273.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae F62]
 gi|59718922|gb|AAW90327.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae FA 1090]
 gi|193934888|gb|ACF30712.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae NCCP11945]
 gi|226513620|gb|EEH62965.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|268548997|gb|EEZ44415.1| LysR family transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268551428|gb|EEZ46447.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268584022|gb|EEZ48698.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586357|gb|EEZ51033.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588623|gb|EEZ53299.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268623231|gb|EEZ55631.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268625396|gb|EEZ57796.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627658|gb|EEZ60058.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291013358|gb|EFE05324.1| LysR family transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|291611331|gb|EFF40401.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae F62]
 gi|317165087|gb|ADV08628.1| LysR family transcriptional regulator [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 303

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL + ++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHHNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184


>gi|237654239|ref|YP_002890553.1| LysR family transcriptional regulator [Thauera sp. MZ1T]
 gi|237625486|gb|ACR02176.1| transcriptional regulator, LysR family [Thauera sp. MZ1T]
          Length = 300

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 139/293 (47%), Gaps = 19/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +   GSF+ AAEQL L ++S ++ I  LE  +G++L  R  R +T T  G+  +
Sbjct: 7   MRLFTRIVELGSFSRAAEQLGLPRASATQIIQQLEARLGVRLLARTTRQVTPTVDGAGYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   L+  + E  +++  P G++RI       + LL   L +F   YP ++I++ 
Sbjct: 67  RRCLRILADLDDAEAEFSQAAHHPQGRIRIDLPDSFCRLLLIPALPDFYTRYPLVRIEIS 126

Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++ ID+  +  DC +R+ +    P+ +  L + + VT     Y A H L     P  +
Sbjct: 127 VGDRQIDLIREGVDCVLRIGELGDVPLHARRLGRLRQVTCASAGYLAQHPL-----PQGL 181

Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++L+ H ++ +           +F     ++ R +     S L VN+  + +  C  G G
Sbjct: 182 EDLEAHWMVDYVSASTAKSLPLEFEVEGRIELRSLR----SRLAVNNGGAYVAACAAGFG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +PDY V+   +    V I+     P   V+  YP     + +++ F +++
Sbjct: 238 IVQVPDYHVREPLEQGRFVEILPAFPPPVLPVHALYPADRPLSARVRVFIDWL 290


>gi|120553080|ref|YP_957431.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8]
 gi|120322929|gb|ABM17244.1| transcriptional regulator [Marinobacter aquaeolei VT8]
          Length = 302

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 103/196 (52%), Gaps = 1/196 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F +V   GSFT AA++L  S   +S+ +S LET +G++L  R  R L LTE G +
Sbjct: 5   EAMRTFVMVVNEGSFTRAADRLDTSPQLVSKYVSQLETHLGVRLLNRTTRRLHLTEAGRQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +V   ++  + +L +   +  G LRI+  +      +   L EF  ++P + I 
Sbjct: 65  YYPRAQQVLSDIDDLENQLGDLQTEAQGLLRISAPVSFAIRHMPALLTEFQRMHPAVGID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+++ +DI  +  D A+R+ + +QSSSLI +++  + +   A+P YL     P   ++
Sbjct: 125 LQLNDRKVDIVEEGFDIALRIGR-LQSSSLIAKRVAPVRLVLCASPAYLARYGTPGKPED 183

Query: 186 LDKHNLITFGDLIPKC 201
           L  H  + +  + P  
Sbjct: 184 LRDHQYLRYSYMDPDS 199


>gi|312602822|ref|YP_004022667.1| LysR family transcriptional regulator [Burkholderia rhizoxinica HKI
           454]
 gi|312170136|emb|CBW77148.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 404

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 98/187 (52%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  S SF+ AA+ L + ++S++  I  LE  +G++L  R  R L LT  G+  +
Sbjct: 75  MQVFTRVVESNSFSRAADTLDMPRASVTTIIQNLEAFLGVRLLQRTTRRLNLTPDGAAYY 134

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +  T+    E +  P GKLR+     +G+ ++   L EF   YP I++ + 
Sbjct: 135 ERCVRILADIAETEQLFHEGARNPRGKLRVDMPSSIGRLVVLPRLCEFHTRYPGIELMVG 194

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +K +D+  +  D  IR+   +Q S+L+ R++        A+P YLK   EP +++EL+
Sbjct: 195 LGDKPVDLIQEGIDAVIRVGT-LQDSTLVARRVGVFQGVTCASPEYLKRHGEPRTLEELE 253

Query: 188 KHNLITF 194
            H  + +
Sbjct: 254 NHYAVNY 260


>gi|307729423|ref|YP_003906647.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583958|gb|ADN57356.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 305

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 132/293 (45%), Gaps = 13/293 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V   G F  AA+ L  S ++++R ++ LE  +G +L  R +R L+LTE 
Sbjct: 2   DRLRAFEVFVTVVARGGFARAADVLGTSPANVTRYVNELEAHLGTRLLNRTSRTLSLTEG 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   +  T+  +  +SV+P G+LRI   +  G   L      F+  YP I
Sbjct: 62  GETLYARCKSILDDVAETEGLVSSASVEPRGRLRINVPVSFGILHLAPLWPAFMQKYPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +DI  +  D AIR+ +   S++   RKL T      A+P YL     P +
Sbjct: 122 ELDVGLIDRVVDIVDEGYDIAIRISR-AGSTNHAARKLATSQNVLCASPAYLARYGAPAT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISC-LQVNSYLSIMQYCVLGSG 240
             +L  H  I +            W     R    P ++ C +  N+  +     + G G
Sbjct: 181 PADLLAHRCIGY----TYAATGDEWQINDRRGKVHPVKVDCQMHTNNGDTARAAALAGQG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   P +++  +     LVR++ D   P   +   YP     + +++   +F+
Sbjct: 237 VIWQPTFLIGGDLRAGTLVRVLPDYRLPEIDILALYPSRRHVSARVRVMIDFL 289


>gi|259909879|ref|YP_002650235.1| Transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96]
 gi|224965501|emb|CAX57033.1| Transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96]
 gi|283479963|emb|CAY75879.1| HTH-type transcriptional regulator ptxR [Erwinia pyrifoliae DSM
           12163]
          Length = 302

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 126/257 (49%), Gaps = 11/257 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  + S+T AA+ L L++SS+S++IS LE  +G KL  R  R + +TE G   +  
Sbjct: 12  IFAKVVETLSYTEAAKALGLAKSSVSKEISALEVRLGAKLLQRTTRRIQVTEVGMTYYHY 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              + H++++  + +++   +PSG LR+   +  G   +   L  F+     + + L L 
Sbjct: 72  CYRILHEVKSADLFIRQFHEEPSGSLRVVAPVTFGCQCIVPVLNRFIASNIHVSVDLDLT 131

Query: 130 NKDIDISMDYADCAIRLRK--PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++ ++   D+ D AI + +  P Q +    R L+ I    YAAP YL N     S  +L 
Sbjct: 132 DRPVNFEDDHIDLAIAITRNLPEQRN---YRPLMDITWGLYAAPDYLINRTAVTSPDDLA 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I F    P       +     +   E R S  + N+ ++++   V  +GIA LP Y
Sbjct: 189 RHECILFRG--PAHTISLPFRKEKQKKDIEVR-SRFRANNSIALLNSAVAKTGIAYLPSY 245

Query: 248 IVK---DNPNLVRIMED 261
           I +   DN  LV+++ D
Sbjct: 246 IAREAVDNGKLVQLLPD 262


>gi|283836387|ref|ZP_06356128.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291067760|gb|EFE05869.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 322

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 7/240 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S +S++I+ LE  + ++LF+R++R + LT +G  
Sbjct: 21  EDLFVFITVARNGGFARAALELGLSPSYVSKRIAILEKCLNVRLFFRNSRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   GQ  +   L  F+L YPDI ++
Sbjct: 81  ALEGAMQVVSEMDGFVSRLDNQRGALTGNITINCSFGFGQKYVAEALSAFMLAYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I +   I R+L T      A+P YL     P S+  
Sbjct: 141 LTLTDREVDLVEEGVDVEIRVGDDI-NELYIARQLATNRRILCASPEYLARHGTPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243
           L +H+ +    +I +    F NWL T  R     R++     NS   ++ + + G GI L
Sbjct: 200 LVQHDCL----MIQEKNSAFGNWLLTDGRQQTHCRLNRFHSSNSGSVVLIWALKGHGITL 255


>gi|221210925|ref|ZP_03583905.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221169881|gb|EEE02348.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 303

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 128/294 (43%), Gaps = 15/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G +  
Sbjct: 12  LVAFEAAVRHASFTRAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL--LQGNLKEFLLLYPDIQIQ 125
              ++V+H L T   E     +KP G L +      G  L  L   L EF   YP+I+++
Sbjct: 71  --AAQVHHLL-TQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPEFRAAYPNIKLR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   +
Sbjct: 128 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L    L+   D   + M    W     +DR   +P+   + +NSY  I+Q  +LG G++L
Sbjct: 186 LANETLLRLEDGQRQWMSWSEWFEQNDIDRQKAQPQD--ITINSYPQIVQMTILGQGVSL 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              Y++    +   LVR+ +   +     Y   P         + F  ++F +A
Sbjct: 244 GWRYMIDACIEAGLLVRVTDASASHGGGYYVISPNDRAQNQAARLFSRWLFEQA 297


>gi|170735582|ref|YP_001776842.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817770|gb|ACA92352.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 315

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G   
Sbjct: 6   NMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   +PD+ I+L
Sbjct: 66  LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPTLTRYHAQFPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P   Q+L
Sbjct: 126 SLSQRMPDLFDGTSDTAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGVPARQQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H  +T   L         W+  ++ P G  +I     +Q N+  S+      G GI +
Sbjct: 186 AAHACLT---LCTPAFPTHEWV--LEGPEGVEQIHVAGPVQTNTAESLALAIRDGIGIGM 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   D   + +LVR++   I     VY  YP            R F+  K R W
Sbjct: 241 LPLYSAIDALRDGSLVRVLPAHILQKMNVYALYPS-----------RRFVDAKVRTW 286


>gi|254235529|ref|ZP_04928852.1| hypothetical protein PACG_01450 [Pseudomonas aeruginosa C3719]
 gi|126167460|gb|EAZ52971.1| hypothetical protein PACG_01450 [Pseudomonas aeruginosa C3719]
          Length = 303

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 141/290 (48%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  +   G+F  AA+ L L ++S+++ I  LE  +G++L  R  R ++LT  G 
Sbjct: 4   FQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +         P G+LR+     LG+  +   L EF   YP++++
Sbjct: 64  AYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPELEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL  +++ +D+  + ADC +R+ + +  SSL+ R L  +     A+  YL+    P  + 
Sbjct: 124 QLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPRQLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  + +    P     F++  +VD R    P  S + VN+  + +  C  G G+  
Sbjct: 183 ELGEHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P Y V     + +L +++ + + PS  ++  YP   + + +++ F +++
Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWL 290


>gi|134278662|ref|ZP_01765376.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|134250446|gb|EBA50526.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 313

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 126/296 (42%), Gaps = 25/296 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA+ LHL+QS+IS+QI  LE  +G  LF RHARGL LT +G  LH
Sbjct: 13  LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T   +  L  T  +L      P   L+++         L   L EF  L+P   ++L 
Sbjct: 73  EATVAAFASLGRTLRQLS----APDTPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ID   +S D  D AIR   P    +L    L    + A AAP YL   R P    
Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYLD--RHPPRAT 185

Query: 185 ELDKHNLITFGDL-----IPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                +++   D       P+ +E   WL A V    G PR    + N     +   V G
Sbjct: 186 AKWVSSVVPLHDASAWPEAPRYVEWRTWLDAVVPGYAGAPRGP--EFNLASLAIAAAVAG 243

Query: 239 SGIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+ +    +V D     R++      V  P+     C   A     ++KAF  ++
Sbjct: 244 QGVVVCRQALVDDEIARGRLVNVFARRVPAPAQYKAIC---ARPEDARVKAFVGWL 296


>gi|120610766|ref|YP_970444.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120589230|gb|ABM32670.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 342

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V R  SF  AA +L  S + +S++I  LE E+ +KL +R  R + +TE+G +
Sbjct: 45  DDLRVFTAVVRKASFAGAAAELGASPAYVSKRIRLLEEELAVKLLHRTTRRVAVTEEGER 104

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +    +    E+  +  +P G LR++ +   G+ ++   +   +  +P +Q++
Sbjct: 105 VFHWAQRILDDWDQLLQEVAVTRREPRGLLRVSCSFGFGRRIVAPAVSRLVERHPGLQVR 164

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  IR+   I +  LI R+L   H    AAP YL     P ++ +
Sbjct: 165 LEVFDRLVDVAGEGFDLDIRVGDEI-APHLIARRLAGNHRVLCAAPGYLARKGTPRAVDD 223

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------------SCLQVNSYLSIMQ 233
           L  H+ +   +               D P G  R+              L  N     +Q
Sbjct: 224 LAGHDCLVIKER--------------DHPFGVWRLRSGAADRTVKVRGSLSANHGEMAVQ 269

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V G GI L   + V  +     LVR++ +    +  V+  YP  L+ + K++    F+
Sbjct: 270 WAVDGRGIVLRSLWDVGPDLATGRLVRVLPEWQQEA-NVWAVYPTRLERSAKVRVCVEFL 328


>gi|327189522|gb|EGE56677.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 317

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 135/301 (44%), Gaps = 12/301 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT  
Sbjct: 7   FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++       +  + E  + +L + S+   G +R++             L  F   +P +
Sbjct: 67  GTRFVETAERMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLHRFAARHPHL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+   + + +S   AD ++ L +P +       KL   H+  Y +  YL        
Sbjct: 127 ALELVTIQQIMSLSRKEADLSVVLDEP-KGGPYFAEKLTDYHLQIYGSRDYLAKAPAITC 185

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             +L +H  +++  ++I       ++L+ V      PRI    Q +S  + +     G G
Sbjct: 186 RDDLLEHPFVSYIEEMI--FAPGLDYLSDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWK 298
           + +LP +     P LVR++   I      +      LK   +++A  +F+   ++  D +
Sbjct: 239 LCILPYFFASRYPELVRVLPAEIDLKRQYWITCHRDLKQAPRVRAVIDFLREAVRGEDAR 298

Query: 299 F 299
           F
Sbjct: 299 F 299


>gi|156934372|ref|YP_001438288.1| hypothetical protein ESA_02203 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532626|gb|ABU77452.1| hypothetical protein ESA_02203 [Cronobacter sakazakii ATCC BAA-894]
          Length = 311

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 136/288 (47%), Gaps = 5/288 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   LR+F  VA +GSF    + + L++S+  + ++ LE  +  +LF R  R L+LT 
Sbjct: 15  GLDIHTLRIFVAVAEAGSFVAGGKAMGLTRSAAGKALARLEAYLETRLFQRTTRSLSLTA 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +    ++   L   +  ++++     G LR+  +   G+ ++   ++EFL   PD
Sbjct: 75  EGHAFYHRCCQILEDLADAESSIRQNPRLAKGILRLTVSEGYGKMIVLPFIREFLHRSPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++   ++ +D+  +  D A+R+   + S   I + +        A+P YL+    P 
Sbjct: 135 VSIEVSFSDRVVDLVEEGFDLALRVGSGVTSYQYITQVIDRTTPQLIASPDYLQEWGMPT 194

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ EL  H  + +G  +      +N + T    +     + ++ +S  +I    ++G GI
Sbjct: 195 SLAELKNHRRLVYG--LGAATTAWNLIDTRQGQLALNGRNYVRFDSGDAIRTAALMGLGI 252

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             LP ++V+++     L+ ++ +    +  ++  YP       +++AF
Sbjct: 253 GFLPSFMVQNDIQQGRLIHVLPEAQGENVAIHAIYPNRRHLPVRVRAF 300


>gi|167572573|ref|ZP_02365447.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 336

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 66  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRGQHPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 186 ARHACLT---LRTPAFPTHEWL--LEGPNGTEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286


>gi|91779559|ref|YP_554767.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692219|gb|ABE35417.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 312

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 133/282 (47%), Gaps = 11/282 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   D +  F  V  +GSF  AAE+++L++S++ + I  LE  +G++L  R  R  +LT
Sbjct: 1   MSDILDGVTTFVRVVETGSFALAAERMNLTRSAVGKVIVRLEKRLGVRLLNRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +        +LE  + +L     +P G+LR++     G + +   L      +P
Sbjct: 61  EDGQVYYDRCVRALAELEAAEADLDSGRREPKGRLRVSVPQAFGHHCVAPVLLGLARKHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D  +R+     S SL  RKL   H    AAP YL     P
Sbjct: 121 QLKIDISITDRFVDVVEEGFDFVVRVGPLADSVSLAARKLGVQHASIGAAPAYLARHGTP 180

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            S+ EL  H +I +   G   P  + D +    + R   +P+   L  +    I+   + 
Sbjct: 181 RSVDELRGHAVIAYLRAGSAQPWDVVDVD--GQIRRAQVQPQ---LGFDDMQGIVDAALA 235

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEA 276
           G G+A LP +++        LV +ME+   PS  ++  +P++
Sbjct: 236 GFGLAWLPSWLLARYAQTGELVTVMENCFRPSQEIHLVWPKS 277


>gi|317406560|gb|EFV86754.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 302

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 17/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F     SG F  AA +L   +S++S++++ LET +G++L +R +R  TLT
Sbjct: 1   MMLNLNDLHFFAQAVDSGGFAAAARRLGCPKSTVSKRVATLETALGVQLLHRTSRSFTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++     V  + +  ++ +     +PSG +RI  ++ + Q  L   L      YP
Sbjct: 61  DVGRDVYDHARAVMIEAQAAEMVVHRRLAEPSGTVRITASVPVAQFQLADRLPVLARRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            ++IQL + ++ +D+  +  D AIR     +  S L+QR++    +   AAP Y+     
Sbjct: 121 KLRIQLHVTDRFVDLVQEGFDIAIRSHFAALPDSDLVQRRMAEEPITLVAAPSYVAERGA 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGE--PRISCLQVNSYLSIMQYCV 236
           P + Q L  H+ +  G      M   +W L      I E  PR   L  +   ++MQ   
Sbjct: 181 PQAPQALGDHDGLMAG------MATKSWRLGDASGHIVEVAPR-PRLHADESTALMQAAQ 233

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  LP  I         L+R++        T     P      G+L A R  I
Sbjct: 234 AGLGIVCLPRTISAQAVSEGTLMRVLPAWTAGRVTTTILTPH---KRGQLPAVRAVI 287


>gi|299770610|ref|YP_003732636.1| transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700698|gb|ADI91263.1| transcriptional regulator [Acinetobacter sp. DR1]
          Length = 313

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+   
Sbjct: 13  MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ ++  
Sbjct: 73  ESCRQVISMVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+     D ++ L + +  S  + R++ TI     A+P YL+    P S ++L 
Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPEDLK 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P    D++ L              L  ++   ++       G+ALLP +
Sbjct: 193 NHACLRLVN--PSITPDWHLLNAKGESYQIDTGGQLIADNPELLLDVVQQDMGVALLPMF 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              D   N  L  I+ +  +P   VY   P            R+FI  K R W
Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292


>gi|293393826|ref|ZP_06638133.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291423653|gb|EFE96875.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 305

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 124/278 (44%), Gaps = 6/278 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR GSFT AA QL ++Q ++S+ ISGLE  + I+L  R  R ++ T
Sbjct: 1   MKRNLNDLLYFVTVAREGSFTRAAAQLGVTQPALSQAISGLEERMQIRLLTRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L +       ++ET    L E   KP+G +RI    D+ +  L   L   L  YP
Sbjct: 61  AAGERLLQAIGHRIDEIETELDMLTELRDKPAGTVRITCGPDVLRTTLLPKLTPLLHQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++   ++   DI  D  D  +RL   I    +       + M A A+P Y      P
Sbjct: 121 DIHVEFDANHGFRDIVADRFDAGVRLGDTIDKDMIAIPIGPKLRMAAVASPDYFSRYPLP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + QEL +H  I     + +    + W    D      R+S  L  N+   I+   + G 
Sbjct: 181 QTPQELTRHQCIN--QRMVRSGGLYVWDFDQDGGDLNVRVSGQLTFNTSEHIVDAALAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA LP+        +  L+R++E    P    Y  YP
Sbjct: 239 GIAFLPEEEFGTHIADGRLIRVLEPWCRPFPGYYLYYP 276


>gi|254501531|ref|ZP_05113682.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222437602|gb|EEE44281.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 297

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 133/293 (45%), Gaps = 25/293 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA SGSF+ A   L L+++ +S  ++ LE   G+ LF+R  R L +TE G++L 
Sbjct: 11  LMVFAQVADSGSFSAAGRHLGLTRAVVSYHVNKLEDAYGLSLFHRAPRSLKITEAGAQLL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +    Q  ++    +P G LRI+  + +G N +   L +F  LYP I++ + 
Sbjct: 71  GHCRVIMDETVAAQRAIERYKQEPEGVLRISCPVSVGLNHVVPVLGDFHRLYPKIKLNVS 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +DI  +  D AIR   P+  S L   +L TI     AAP+Y +    P +I +L 
Sbjct: 131 FSDTVVDILEEGFDLAIR-GAPLPDSDLKATRLATISTCLCAAPNYFQTRSRPKTIDDLR 189

Query: 188 KHNLITFGD------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            H  +   +      L+P         + V  P G      +  N+ ++   +   G GI
Sbjct: 190 DHQWVLHMNKQKVEILLP------GGASKVFEPEGS-----ITTNNAVARTAFVEAGHGI 238

Query: 242 ALLPDYIVKDNPNL-VRIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNF 289
             +P Y    +P +   ++E+V+     P   +Y  +P     +  L+   +F
Sbjct: 239 GRIPRY--DADPKIRAGLLEEVLPGTRLPEIAIYGVFPPGAAMSSNLRLLLDF 289


>gi|237747105|ref|ZP_04577585.1| transcription regulator protein [Oxalobacter formigenes HOxBLS]
 gi|229378456|gb|EEO28547.1| transcription regulator protein [Oxalobacter formigenes HOxBLS]
          Length = 303

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 131/275 (47%), Gaps = 8/275 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F   A  GS   A+  L ++   + R+I  LE  +GIKL +R  R LTLTE+G+  
Sbjct: 6   QIEAFVNAAEKGSLAKASLVLGITPVMLGRRIDALERRLGIKLMHRTTRHLTLTERGTVF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +L+  +  + E   K +G L ++     G+  +  +   FL   PD++I  
Sbjct: 66  LDHCRKILDELDQAEKMIGEGLNKATGHLIVSAPAAFGRKHVAPHAPAFLAANPDVKISF 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D +IR+   I   SL+  KL + H    A+P YLK    P +++EL
Sbjct: 126 NLSDQVVDLVREGYDLSIRIGGTI-DPSLVAIKLCSNHRVVCASPDYLKKFGVPRTLKEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           ++HN +TF     +  +   W     +R +       L  N    +  +C+ G G+A   
Sbjct: 185 NQHNCLTFN---LQGGQQRGWHFKENNRTVIVRTSGNLDCNDGELLHHWCLEGYGLAWRS 241

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEAL 277
            + ++    +  LV ++++   P++ +   YP+ L
Sbjct: 242 TWEIQSELASGKLVTVLDEFALPNYDIMAVYPQQL 276


>gi|254505863|ref|ZP_05118008.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219551086|gb|EED28066.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 295

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 17/295 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +++ + S+IS+++  LE  +G++L  R  R +T TE
Sbjct: 1   MDWIQSVHSYIRVVDEGSFNGAARKMNTTSSAISKRVHWLEERIGVQLLKRTTRTVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +        + ++   E +  S  P+G L+I  T+ +G   L   L +FL +YPD
Sbjct: 61  AGALFYERAKMQLEEWQSIVDETRSVSQSPAGLLKIGATLAVGSKFLVQYLNDFLRMYPD 120

Query: 122 IQIQLILDNKD--IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           I+IQLI        ++S+D      R  + + S S     L       YA+P Y++   E
Sbjct: 121 IRIQLITTTPGQLPELSLDL--FISRELEQLNSLSFKATPLFEHKAGFYASPSYIETHGE 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +I+EL  HN + +G+   + +     L    R +    +S     +    M Y    S
Sbjct: 179 PKTIEELTSHNALIWGERPQREIT----LTQGKRIM----LSGNFATTNPEAMFYAAKNS 230

Query: 240 -GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI +  D ++KD   N  L RI+ ++     TVY  YP+      + K F +++
Sbjct: 231 MGILVTNDVMIKDDLNNGTLRRILPNITADEATVYAYYPKLDYQHTRTKLFLDYL 285


>gi|170698271|ref|ZP_02889348.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136852|gb|EDT05103.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 310

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 138/288 (47%), Gaps = 11/288 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V   G+F  A+E + ++   +SR I+ LE ++ I+LF R  R ++LTE+G + +  
Sbjct: 14  VFAAVVDMGTFAAASEVIGMTPPGVSRAIARLEKKLNIRLFNRTTRSVSLTEEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE        S+    GKLR+     + + +L   L  F+  +P+++I+LI  
Sbjct: 74  VMPHLAGLEEAAAAAAGSASTVRGKLRVNLDPVVYRTILGPQLDAFMDAHPELEIELIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187
           +   D+ MD  D A+R  +P ++S+LI RKL+   +   A+P Y+     P   ++L   
Sbjct: 134 DSLGDLVMDGFDIAVRFGEP-RASTLIARKLLDTGIVTVASPSYVARQGRPTKPEDLASR 192

Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242
            H  I F +  P+  + F W       R + + R   L VN   +++  C+ GSGIA   
Sbjct: 193 SHRCIEFRN--PETGKPFAWEFHRRRKRIVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LL    +  +  L+ +  +     F +Y  YP       K +AF +F+
Sbjct: 250 LLGAEPLIASGQLIDLFPEWADERFPLYAYYPSRHHLPAKTRAFLDFV 297


>gi|332185086|ref|ZP_08386835.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
 gi|332014810|gb|EGI56866.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
          Length = 290

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 14/253 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V ++GS    A    LS + +S++I+ LE  +G++L +R  R LT+TE G+  H  
Sbjct: 7   LFVDVVQAGSLAGGARTWRLSPAMVSKRIARLEARLGVRLLHRTTRRLTMTEAGAAFHGE 66

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + +   L   +  +   +  P+G LR+      G+  +   L  FL  YP I++ L L 
Sbjct: 67  VAPLVAGLRAAEARVSHIAAGPTGPLRVTAPTSFGRLWVAPYLPGFLARYPAIRLSLDLT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+  +  D AIR+      S L   +         A+P YL     P  I  L  H
Sbjct: 127 DDFVDVMGERVDLAIRITA-APPSGLAVHRFADNRRVLCASPSYLAQAGTPTGIAALADH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            L+     +P       W  T     G+   S ++ NS   + +  + G+GIAL   + V
Sbjct: 186 RLLAANGQLP-------WRLTGATVTGD---SLIETNSSEVVREMALAGAGIALRSLWDV 235

Query: 250 KD---NPNLVRIM 259
            D   +  LVR++
Sbjct: 236 ADALADGRLVRVL 248


>gi|328725366|ref|XP_003248445.1| PREDICTED: uncharacterized HTH-type transcriptional regulator
           yafC-like, partial [Acyrthosiphon pisum]
          Length = 253

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 122/251 (48%), Gaps = 17/251 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++LR +  V  +GS T AAEQL  + S ISR +S LE+++   L +R  R L LTE+G  
Sbjct: 7   EELRAWVAVVDTGSITAAAEQLDQTSSGISRALSRLESKLQTTLMHRTTRRLALTEEGLI 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++   +E  + ++ +    PSG+LRI        +++   + EF   YP IQ++
Sbjct: 67  FLDHARQILSSVERAEEQIAQRRDIPSGRLRINANAPFMLHVIVPLVAEFRQRYPLIQLE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D+  ID+     D AIR+ + ++ S+L  R L +      A+P YL+    P S++ 
Sbjct: 127 LNTDDIMIDLLEQQTDIAIRVGE-LRDSTLRARVLGSSATRLVASPAYLQQYGSPESVEA 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L  H L+ F  L    +    W      P+ +     LQ+   LS      + Q  + G 
Sbjct: 186 LSAHQLLGFSQLDAHNV----W------PVWQREGEFLQIKPTLSASSGETLRQLALAGQ 235

Query: 240 GIALLPDYIVK 250
           GIA L D++ +
Sbjct: 236 GIARLSDFVSR 246


>gi|330504297|ref|YP_004381166.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918583|gb|AEB59414.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 299

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 131/286 (45%), Gaps = 10/286 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  V   GS T AAE L +S++ +SR ++ LE+  G++L +R  R L+LT  G ++  
Sbjct: 8   RVFVEVLERGSQTAAAEALDMSRAMVSRYLAELESWAGVRLLHRSTRRLSLTAAGEQMLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    E  Q   Q     P G LRI  +    Q  L   L+ F   YP + + L++
Sbjct: 68  QCREMLALAERMQALGQSVDDTPRGTLRITCSQSFAQAWLVHVLRAFTERYPQVSVDLLV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++     D A+R+   +   +LI R+L        A+P YL     P   ++L +
Sbjct: 128 GSEAVNLVEARIDLALRITNQL-DPNLIARRLAVCRSVVCASPDYLARHGAPQRPEDLTR 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP--- 245
           HN + +     + + +F     V   I       L  N  + +++  + G+GI+L P   
Sbjct: 187 HNCLAYA-YFGRSLWEFEHQGEV---IAVSVSGSLSANESMVLLEATLAGAGISLQPLYS 242

Query: 246 -DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D +V++   LV ++ D   P   ++  Y    +    ++   +FI
Sbjct: 243 VDALVREG-RLVHLLADYQPPQLGIHALYGTRRQMLPAMRLLLDFI 287


>gi|317406694|gb|EFV86857.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 302

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 41/303 (13%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  V R+ SF+ AAE L +S + ++++I  LE  +G  LF+R  R + ++E G +++
Sbjct: 10  LRVFNAVVRASSFSRAAEDLGMSAAYVTKRIRLLEASLGTPLFHRTTRRVVVSEAGERVY 69

Query: 68  ----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R+  +V H +E   +  +E    P G LRI ++   G+ ++   L  F+  +P +Q
Sbjct: 70  HWAQRILDDVEHLVEEVGVTRRE----PRGLLRICSSFGFGRRVVAPALSAFVSRHPAVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  + ++ +D++ +  D  +R+   I +  +I RKL   H    AAP YL     P  +
Sbjct: 126 VRFEVFDRLVDVAAEGYDLDVRVGDDI-APHVIARKLAANHRLLCAAPSYLAERGAPRKL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------------SCLQVNSYLSI 231
            +L  H+ +   +               D P G  R+              L  N+   +
Sbjct: 185 DDLAAHDCLVIKER--------------DHPFGVWRMRRGEREHTVKVRGPLSANNGEMV 230

Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFR 287
           +Q+ V G GI L   + V   P +       + P +     ++  YP  L  + K++   
Sbjct: 231 VQWAVDGRGIILRSAWDV--GPLIAAGKLVPVLPQYRQEANIWAVYPARLNASAKVRVCV 288

Query: 288 NFI 290
           +F+
Sbjct: 289 DFL 291


>gi|295700531|ref|YP_003608424.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439744|gb|ADG18913.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 305

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 136/292 (46%), Gaps = 15/292 (5%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           VA +G F  AA++L ++ SS++R +  LE  +G  L  R  R ++LT+ G+      S +
Sbjct: 13  VADAGGFAKAAQRLGVATSSVTRLMDALEDSLGTALLTRTPRRVSLTDAGATYVEQISRL 72

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
             +L      + +S   P G LR+       + +L  +L  FL  YP + + +++ +  +
Sbjct: 73  LDELAEADESVLDSGAAPVGALRVTVPSTYNRIVLAPHLAAFLREYPRVALDVVVADHFV 132

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL-- 191
           D+++D  D A+R+  P    +LI RK+        AA  YLK    P    +L +H    
Sbjct: 133 DLALDRIDVAVRIGLPSGDPNLIVRKMADNPRFVVAAHEYLKKAGMPEEPADLAEHECLR 192

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPDYIVK 250
           I +G           W  T    I +  +    +++ L ++   VL   G ALLPD++V 
Sbjct: 193 IAYGG---SYRARQIWTFTRGEEIEKVNVRGRLISNSLDMLLQAVLAEQGFALLPDWLVN 249

Query: 251 ---DNPNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              D+  L+R   D  +TP      V+  Y    +++ K++A     FL+AR
Sbjct: 250 EHIDSGRLMRCFADWKVTPQSGDVVVHAAYLPNRRHSTKVRAL--LQFLEAR 299


>gi|254418113|ref|ZP_05031837.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
 gi|196184290|gb|EDX79266.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
          Length = 300

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 140/293 (47%), Gaps = 20/293 (6%)

Query: 6   DKLRVFYVVARSGS---FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L      AR+GS   +T AA  L +S S++S+ +  LE  +G+ LF R  R LTLT +
Sbjct: 8   DRLTGLIAFARAGSLGSYTAAARSLSISPSAVSKSVQRLEQRLGVSLFTRTTRSLTLTPE 67

Query: 63  GSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G +LH R    +    E  Q+ +   S +PSG LRIA ++ LG +++   L EF   YP 
Sbjct: 68  GRELHGRALKLLQDAEEIEQVAMTARS-EPSGVLRIAASLPLGIHVIAPALPEFRRRYPK 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +DI     D A+R+ + +  S L+ R+L  + + A+A+P YL +   P+
Sbjct: 127 VTVDLRLSDQIVDIVDLGVDVAVRIGE-LADSRLLSRRLAPMRLGAFASPAYLASRGAPI 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCV 236
               L +H+ +          + F W       IGE  I     S + V+   +++   V
Sbjct: 186 HPDALAEHDTVNL--RYQSSGQVFRW----PFKIGEREIEIVPPSGIIVDVSEAVLATLV 239

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G G+ L   ++         LV I+ +       +   +PE  +    ++AF
Sbjct: 240 AGGGVGLSATFVAAPYVARGELVPILTEYAVERHNITALWPEGRRANPAVRAF 292


>gi|184157763|ref|YP_001846102.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332876450|ref|ZP_08444217.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209357|gb|ACC56755.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322508074|gb|ADX03528.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323517655|gb|ADX92036.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735308|gb|EGJ66368.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 311

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 101/191 (52%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G +
Sbjct: 11  NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I IQ
Sbjct: 71  VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++ +D+  D  D A+R+ +   S  L+ RKL+ I     A P YL     P    +
Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PSGGLMGRKLIDIDHLVCATPEYLAKHGTPNHPHD 189

Query: 186 LDKHNLITFGD 196
           L +H  I  G+
Sbjct: 190 LKQHECIYLGE 200


>gi|170733839|ref|YP_001765786.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|254247460|ref|ZP_04940781.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124872236|gb|EAY63952.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|169817081|gb|ACA91664.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 300

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD      + V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MGFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++  +S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEEAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+  Y+   
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETRVLTCASAAYVARH 179

Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW 207
            EP   ++L D H  +   D  P     + W
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYEW 208


>gi|300716733|ref|YP_003741536.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299062569|emb|CAX59688.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 304

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 135/296 (45%), Gaps = 24/296 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G F+ AA+ L +  +++S+ I  LE  +G+KL  R  R +++T  G+  +
Sbjct: 7   IRAFARVVETGGFSKAAQSLQMPNATLSKSIQALEKHLGVKLLERSTRRVSVTRDGTAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +  +LE     L  S   P G+LRI T   +   LL   L +F   YPDI++Q+ 
Sbjct: 67  ERTKHLLSELEDIDATLGRSQATPKGRLRIETGGAVASLLLIPALPDFCARYPDIELQVG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  D+  +  D AIR+       +LI RK+        A+  YL+    P   Q++ 
Sbjct: 127 VSDRTADVIGENIDGAIRISA--ADGALISRKIGAFGWTTCASKAYLQRYGVPEHPQQIL 184

Query: 188 KHNLITF-------GDLIPK--CMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
             N           G L+P   C +  +          E   +C + VN   + +   + 
Sbjct: 185 DGNFPVAGYFSSQTGILLPMKFCKQGESL---------EITPACKVMVNESNAHLATALA 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+    D+++  +     LV ++ED   P   +YF Y  + + + K++ F +++
Sbjct: 236 GIGLIHTLDFMIHPSIKAGKLVPVLEDWRAPPVDIYFSYAPSRQLSTKVRVFADWV 291


>gi|237812011|ref|YP_002896462.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|237505854|gb|ACQ98172.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 333

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 14/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 37  DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 96

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 97  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 156

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 157 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 215

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W     RP      +    N   +     + G+GIAL
Sbjct: 216 ADLCAHRCIVLGE-----QPRVEWRFDGPRPAAVEVSAAFLTNDGGAARTLALEGAGIAL 270

Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
              + V   P+L      R++ +  + +  ++  YP       +++ F +++ ++  R W
Sbjct: 271 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 328

Query: 298 KF 299
           ++
Sbjct: 329 RW 330


>gi|167902966|ref|ZP_02490171.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 301

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 14/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W     RP      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGE-----QPRVEWRFDGPRPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
              + V   P+L      R++ +  + +  ++  YP       +++ F +++ ++  R W
Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 296

Query: 298 KF 299
           ++
Sbjct: 297 RW 298


>gi|332345484|gb|AEE58818.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 299

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL  +P I+++L 
Sbjct: 67  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIRT-GALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|217974780|ref|YP_002359531.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217499915|gb|ACK48108.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 300

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 17/297 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG +  
Sbjct: 7   IRSFVEVANCGSFTKAAEHLDLSRLQVSRHIQEVEQWLSLRLLHRTTRSVSLTLQGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ ++P + IQL+
Sbjct: 67  QFCQRILSEVAAMESRAHSHNSELVGSIRIATPIGLGQHSLFDVVDRFIKIHPKVSIQLV 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +    +  +  D A+R   +P    +LI R+L+TI     AAP YL +   PL ++ +
Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DDNLIARRLMTIDAVICAAPSYL-DSNTPL-VEPI 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           D   L+    LI    +  NW    +      +++  L+ N    ++   + G GI  LP
Sbjct: 183 D---LLAHNCLIHSAQQ--NWPFLKELQAEHVKVTGNLKANDMGVLVSAALRGHGIVRLP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +      +  L  ++ D  TP  T++  Y   L  + +    R FI   A+ W+ 
Sbjct: 238 CDLANQYLASGQLKEVLPDFTTPGQTLWAVY---LSRSYQQNLVRAFIDFTAQQWQL 291


>gi|78061264|ref|YP_371172.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969149|gb|ABB10528.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 319

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 7/286 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +WD  RVF  V R+G+   AA  L + Q+++ R+++ LE  +G KLF + + G  +T
Sbjct: 27  LSMNWDDARVFLAVHRTGTLREAAAVLDVDQATVGRRLTALEKALGAKLFLKTSSGYVVT 86

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G    +    +       +  +  S  +  G++R+ TT  L  + +   ++      P
Sbjct: 87  QAGEHSLQAAEAMEQAASDFERRVHGSDDRLEGEVRVTTTDSLAMDFVVPAIRSLRRKCP 146

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + L    + ++++   AD AIR   P ++  L++RKL    +  +A+  YL    EP
Sbjct: 147 AIHVILTTSVQVLNLTRRDADLAIRTVMP-ENPDLVRRKLSEWEVGLFASREYLDAHGEP 205

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
                 + H+L+ +   I     D     +++R     RI+  QV+S L +      G G
Sbjct: 206 AIGAAFEGHDLVVYQPAITSNQGDTLCGESMER----GRIAA-QVSSSLMLATAIRSGIG 260

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKA 285
           I  LP Y+ + + +LVRI  D    + + V+      L  T +++A
Sbjct: 261 IGELPVYMAQGDDSLVRIWPDKSRAAPYQVWLVSHTDLNRTARVRA 306


>gi|107023416|ref|YP_621743.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690498|ref|YP_836121.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893605|gb|ABF76770.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648587|gb|ABK09228.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 300

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD      + V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MGFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++  +S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEEAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+  Y+   
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETRVLTCASAAYVARH 179

Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW 207
            EP   ++L D H  +   D  P     + W
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYEW 208


>gi|53717968|ref|YP_106954.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|126441320|ref|YP_001057397.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|167717745|ref|ZP_02400981.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167736776|ref|ZP_02409550.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167813878|ref|ZP_02445558.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167822396|ref|ZP_02453867.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167843983|ref|ZP_02469491.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167892487|ref|ZP_02479889.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167900986|ref|ZP_02488191.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167909202|ref|ZP_02496293.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167917237|ref|ZP_02504328.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|254182077|ref|ZP_04888674.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254188008|ref|ZP_04894520.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196436|ref|ZP_04902860.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|52208382|emb|CAH34316.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|126220813|gb|ABN84319.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|157935688|gb|EDO91358.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169653179|gb|EDS85872.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184212615|gb|EDU09658.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 320

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 142/293 (48%), Gaps = 16/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + 
Sbjct: 6   SMNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L+     +  +SV P G+LR+ +    G   +   +  +   Y D+ +++
Sbjct: 66  YERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYADVTVEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +
Sbjct: 126 TLSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPATIAD 185

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241
           L  H+ I       L+   + +    + V      P    + VN +L  ++  VL G+GI
Sbjct: 186 LQHHSFIRREPNETLLDAAISEVAAASRV------PMSGNVIVN-HLEGLRVAVLGGAGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           ALL   +V ++     LV ++ D + P    +Y  Y      + K+++F +F+
Sbjct: 239 ALLGTEVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFL 291


>gi|295095811|emb|CBK84901.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 297

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 14/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  SGSFT AA+ L++  +++S+ +  LE  +  +L +R  R +  T +G + +
Sbjct: 3   MRAFTRVVESGSFTRAADSLNMPIATLSKLVKSLEAHLETRLLHRTTRRVVTTAEGMEYY 62

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   +E      + S   P G LRI       +++L   L +F   YPD++I L 
Sbjct: 63  EKALRVLIDIEDIDTAFRASCCTPKGHLRIDVGGSTARDVLIPLLPDFFQRYPDLRINLG 122

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           + ++ +D+     DC IR   P+  SSLI R +    M A A P YLK    P   QEL 
Sbjct: 123 VADRPVDLISGNVDCVIR-GGPLDDSSLIARHIGDARMIACATPGYLKTHGIPAYPQELR 181

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISC---LQVNSYLSIMQYCVLGSGIA 242
           + H LI++   +      F +L   DR  GEP  IS    L VN   + +   + G GI 
Sbjct: 182 NGHKLISYLSPVTGRAFPFRFL---DR--GEPLEISVPHHLGVNESNAHLAAALAGLGII 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
               Y  +   +   LV ++ D    ++  +  YP++   T +L+ F
Sbjct: 237 QTFGYAARTHLETGALVEVLSDWRPKAYPFHVVYPQSRHLTHRLRVF 283


>gi|218768928|ref|YP_002343440.1| probable LysR-family transcriptional regulator [Neisseria
           meningitidis Z2491]
 gi|254805668|ref|YP_003083889.1| LysR-family transcriptional regulator [Neisseria meningitidis
           alpha14]
 gi|121052936|emb|CAM09290.1| probable LysR-family transcriptional regulator [Neisseria
           meningitidis Z2491]
 gi|254669210|emb|CBA08010.1| LysR-family transcriptional regulator [Neisseria meningitidis
           alpha14]
 gi|319411226|emb|CBY91633.1| putative HTH-type transcriptional regulator [Neisseria meningitidis
           WUE 2594]
          Length = 303

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LT  G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTGAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184


>gi|190892374|ref|YP_001978916.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697653|gb|ACE91738.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 298

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 15/278 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  VA   SFT AA +L ++QS++S  +  LE  +G++L  R  R +  TE G
Sbjct: 5   NFNELLLFLAVAEERSFTRAAAKLGVAQSTLSYAVKELEARMGLRLLTRTTRSVATTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    ++E     L     KP+G +RI  +    ++++   L   L  YPDI+
Sbjct: 65  ERLRQSLAPRISEIEADIEALMAYRDKPAGTVRITLSNHAMESVVWPKLAPILGEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +DN   +I  D  D  +RL + ++   +  R      +   A+P Y K    P + 
Sbjct: 125 LELSVDNSFRNIVEDGFDAGVRLGESLEKDMVAVRIGPDWRLVVVASPDYFKTRPVPTTP 184

Query: 184 QELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           QEL +HN +       G L     E  N    V R  G+     L  N+   ++   + G
Sbjct: 185 QELMQHNCVNRRLDRIGGLYAWEFEKNNEEVRV-RVEGQ-----LTFNTDREMVGAALQG 238

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
            GIA +P+  V  +     L  I++D  TP F  Y+ Y
Sbjct: 239 YGIAFVPESYVATHLAEGRLTLILDD-WTPKFAGYYLY 275


>gi|237731835|ref|ZP_04562316.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226907374|gb|EEH93292.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 313

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 139/285 (48%), Gaps = 13/285 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + IS++++ LE  + + L +R  R +T+TE+G +
Sbjct: 16  NDLRVFMLVARRAGFAAVAEELGVSPAFISKRVALLEQTLNVVLLHRTTRRVTITEEGER 75

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    EL ++   P G LRI ++   G+ ++   L      YP ++++
Sbjct: 76  IYEWAQRILQDVDQMMDELSDARQIPQGMLRIISSFGFGRRVVAPALSALAKEYPQLELR 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 136 FDVEDRLVDMVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFVARHGVPKQLND 194

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L      TF  L+ K  +    +  +    G   I     L  N    + Q+C+ G GIA
Sbjct: 195 LS-----TFPCLVIKERDHPFGIWQMRNKEGAHSIKVTGPLSSNHGEVVHQWCLDGQGIA 249

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           L   + V DN    +LV I+ +   P+  ++  Y   L  + K++
Sbjct: 250 LRSWWDVCDNIASGHLVHILPEYYQPA-NIWAVYVSRLATSAKIR 293


>gi|170750153|ref|YP_001756413.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656675|gb|ACB25730.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 318

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 136/296 (45%), Gaps = 18/296 (6%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L      ARS   GS++ AA  L +S S++S+ +  LE  +G+ LF R  R LTLT +
Sbjct: 7   DRLTGIVAFARSASLGSYSAAARSLGISPSAVSKSVQRLEARLGVSLFTRTTRSLTLTPE 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  + E  +     +  +P+G L++A +I +G +LL   L  F   +P +
Sbjct: 67  GRDLQERALRLLREAEAIEQAAVAARSEPAGTLKVAASIPVGVHLLGPALPRFRARHPKL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L ++ +D+  +  D AIR+ + +  S L+ R+L    + A+AAP YL     P  
Sbjct: 127 SVDLRLSDRFVDLIEEGIDVAIRVGE-LADSRLVSRRLAPHRLGAFAAPVYLARRGTPRH 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVL 237
             +L  H+ + F        +   W   V    G  RI     + +  +   ++    V 
Sbjct: 186 PDDLAHHDCVNF--RFQSTGQALRWPFQV----GGRRIEFTPHAGIVADFSDAVAAVLVA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI + P YI   +     LV +++D           +PE+ +    +KAF  F+
Sbjct: 240 GGGIGISPTYIAAPHVARGALVPVLQDFAVDRSVFTALWPESRRGNPNVKAFLAFL 295


>gi|220919661|ref|YP_002494964.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
 gi|219952081|gb|ACL62472.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 297

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 125/269 (46%), Gaps = 8/269 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA+ GSFT AA +L ++QS++S  ++GLE  +G++L  R  R ++ TE G +L R+ 
Sbjct: 12  FTTVAQEGSFTRAAARLGVTQSALSHAMNGLEARLGLQLLNRSTRSVSPTEAGERLLRIV 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              + ++E     L E    P+G +RI       + +L   L+  L  YPDI ++++ + 
Sbjct: 72  GPQFEQIEVELSALTELRETPAGTVRITAPEHAAETVLWPALERLLPDYPDITVEVVTEQ 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              +I  +  D  +R+ + ++   +  R    + +    AP Y +   +P   ++L    
Sbjct: 132 SLTNIVAERFDAGVRIGEHVEKDMVAVRIGPPMRIAVVGAPAYFQGRPKPKQPEDLTAQR 191

Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDYI 248
            I      P     + W      R +   R+    V + L +++   L G G+A LP+  
Sbjct: 192 CINLRR--PTRGGFYPWEFGRAGRELAV-RVEGQLVFTSLHLIRNAALAGLGLAYLPEDQ 248

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYP 274
           V+       LVR++ED   P    +  YP
Sbjct: 249 VQAQVAEGRLVRVLEDWCEPFPGYHLYYP 277


>gi|304389125|ref|ZP_07371167.1| LysR family transcriptional regulator [Neisseria meningitidis ATCC
           13091]
 gi|304336924|gb|EFM03116.1| LysR family transcriptional regulator [Neisseria meningitidis ATCC
           13091]
 gi|325203410|gb|ADY98863.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M01-240355]
 gi|325205375|gb|ADZ00828.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M04-240196]
          Length = 303

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LT  G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTGAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184


>gi|289625166|ref|ZP_06458120.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651350|ref|ZP_06482693.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330869162|gb|EGH03871.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 298

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 128/257 (49%), Gaps = 15/257 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGS + AAE++  + S +SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  ++E+ +  L  S   P+G+LRI        + +  ++ EF   YP
Sbjct: 61  EEGKFFLERARHIIEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  ID+     D AIR+   +  S+L  R L +  ++  A+P YL+    P
Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRI-GVLPDSTLHARSLGSCLLNIVASPAYLQRHGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W---LATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + ++L +H L+ F  +     E  N W    A  DR   +P IS     S    +++ V
Sbjct: 180 KTAEDLAQHVLVGFTHV-----ESLNQWPLRHAEGDRLSIKPAISA----SSGDTLRHLV 230

Query: 237 L-GSGIALLPDYIVKDN 252
           L G GIA L D++  D+
Sbjct: 231 LEGVGIACLSDFMTNDD 247


>gi|307727578|ref|YP_003910791.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588103|gb|ADN61500.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 297

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 142/296 (47%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  VA   SF+  AE+L  S S ++R +S LE  +GI+LF R  R + LT+ G+
Sbjct: 4   FRAMQVFTQVAECRSFSQTAERLSTSTSVVTRHVSCLEKHLGIRLFQRTTRKVVLTQAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGN--LKEFLLLYPD 121
           +      ++  +LE  +        + SG++RI   + LG  +LLQ      ++   +P 
Sbjct: 64  EYADGCRDLLRQLEAVESRATTEQTELSGEIRI---VALGSFSLLQLTPLFADYQARFPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + L  + +D+     +  I     ++S +LI R+L++      A+PHYL     P 
Sbjct: 121 VNLNVTLTERRVDLLEGGFEVGIVSEHMVRSETLILRRLISSFCIPVASPHYLALAGHPK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           +  +L    +I+    +P       W+  VDR   +  ++    + VNS +  MQ  + G
Sbjct: 181 TPADLKTCRVIS----VPTDTAQQAWV-FVDREGKQESVTVQPSMTVNSVVMQMQLALNG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G+ALLP+ +V D      LV +++   ++     V   YP     + K++AF N 
Sbjct: 236 MGVALLPNELVADALRARTLVHVLDAYSLLNADVAVSLVYPSRDFVSRKVRAFINL 291


>gi|317054433|ref|YP_004118458.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952428|gb|ADU71902.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 302

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT AA+ L +  +++S+ +  LE  +GI+L  R  R +T+T +G   +
Sbjct: 7   IRAFARVVEAGNFTRAADSLDMPNATLSKLVQELEAHLGIRLLQRTTRRVTVTAEGRDYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE         S +  G LRI       +++L   L +FL  YPDI+I L 
Sbjct: 67  EKALRIVRDLEDIDASFNVVSSRLRGHLRIDVGGSTARDVLIPALPDFLARYPDIRIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           + ++ +D+  D  DC IR   P+  SSLI R +    M   A P YLK    P    EL 
Sbjct: 127 VSDRAVDLISDNVDCVIR-GGPLSDSSLIARHIGDATMITCATPGYLKAFGVPAYPDELK 185

Query: 187 DKHNLITF 194
           + H LI++
Sbjct: 186 NGHRLISY 193


>gi|54301752|ref|YP_131745.1| putative transcriptional regulator [Photobacterium profundum SS9]
 gi|46915172|emb|CAG21945.1| putative transcriptional regulator [Photobacterium profundum SS9]
          Length = 297

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 136/281 (48%), Gaps = 9/281 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +WD +R+F  VA  GS + AA+ + +SQ ++SRQI  LE   G+ LF R   GL LT 
Sbjct: 3   SMEWDSIRIFLAVAEQGSMSAAAQVVGMSQPTVSRQILALEERTGLHLFERSTSGLKLTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     +     E    ++  SS++ SG +R+A +   G + L   L  F  ++P 
Sbjct: 63  VGCQLLESAKDTALGAERFSRQVNGSSIEESGNVRLAVSELFGFHFLPEALAAFHRVHPL 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LI+ N  ++++   AD +I  +KP Q   L+   L++  +  +A   Y+ +   P 
Sbjct: 123 INVELIVSNDKVNLNKRDADISICQQKPEQ-PDLVVTYLMSRTLGFFAHKAYIDDVGYPE 181

Query: 182 SIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  ++ +  H++I F +         N      R + + + +  + +SY   +      +
Sbjct: 182 TPDDIYRAPHSVIGFDN----SNMYINQAEKSGRNLTKKQFT-FRTDSYQMQLNLIQAQA 236

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKN 279
           G+A+    + K    L+ I +D+  P+ T +  C+ +   N
Sbjct: 237 GVAVTITELAKKTAGLIEIFKDIPLPNITWWLVCHRDVQVN 277


>gi|126172855|ref|YP_001049004.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|304410739|ref|ZP_07392357.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307304834|ref|ZP_07584584.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|125996060|gb|ABN60135.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
 gi|304351223|gb|EFM15623.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306912236|gb|EFN42660.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 300

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 17/297 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG +  
Sbjct: 7   IRSFVEVANCGSFTKAAEHLDLSRLQVSRHIQEVEQWLSLRLLHRTTRSVSLTLQGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ ++P + IQL+
Sbjct: 67  QFCQRILSEVAAMESRAHSHNSELVGSIRIATPIGLGQHSLFDVVDRFIKIHPKVSIQLV 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +    +  +  D A+R   +P    +LI R+L+TI     AAP YL +   PL ++ +
Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARRLMTIDAVICAAPSYL-DSNTPL-VEPI 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           D   L+    LI    +  NW    +      +++  L+ N    ++   + G GI  LP
Sbjct: 183 D---LLAHNCLIHSAQQ--NWPFLKELQAEHVKVTGNLKANDMGVLVSAALRGHGIVRLP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +      +  L  ++ D  TP  T++  Y   L  + +    R FI   A+ W+ 
Sbjct: 238 CDLANQYLASGQLKEVLPDFTTPGQTLWAVY---LSRSYQQNLVRAFIDFTAQQWQL 291


>gi|330960836|gb|EGH61096.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 305

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 13/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A  GSFT  AE + + +  ++R I  LE  + ++LF R  R + LT +G + +
Sbjct: 7   MQVFVKLAELGSFTKVAEAMQVGRPHLTRTIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 66

Query: 68  -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV   +    ETT +  +  S    G+LRI       Q      L+ F   +PDI++ L
Sbjct: 67  ERVKGNLADLAETTSMFDRNGSAL-RGRLRIDIPAAFSQRSFMETLRSFTQAFPDIKVVL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+  +  DCA+R+ + +  SSL+ RK+    M   AAP YL     P ++ +L
Sbjct: 126 GVTDRTVDLVAEGIDCALRIGE-LPDSSLVVRKIGKATMVTCAAPSYLYAFGTPQTLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +H  ++F  L         W   L   D P   P    + VN   + +Q  + G GI  
Sbjct: 185 KRHCGVSF--LSGHNHRPLPWHFSLNGEDLPY--PARGGITVNESNAYVQCGLAGFGILQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            P   V+    +  LV ++E        V   YP       +++AF
Sbjct: 241 APGITVESFLASGGLVEVLEAFRPLPRPVSVLYPSRTHLAPQVQAF 286


>gi|323494072|ref|ZP_08099188.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323311699|gb|EGA64847.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 295

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 131/270 (48%), Gaps = 17/270 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW++ R F VVA  GSF+ A   +++SQ ++ RQI+  E E+ + LF R  + L LT
Sbjct: 6   IQFDWNRARAFLVVAEEGSFSAAGRAMNISQPTLGRQIAAFEQELNVTLFERVGKKLVLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNL--LQGNLKEFLL 117
           E GSKL++  S++        +         +G + I+ T +D       L   L+E+  
Sbjct: 66  ESGSKLYQHVSQMAESANQMLLTALGQDENIAGDVSISLTELDAFFRFPPLISQLREYA- 124

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P+I I+LI+ N+  D+    AD AIR ++P     LI RK+    +H Y     +++ 
Sbjct: 125 --PNINIELIVSNQVSDLKRREADIAIRYQRPT-DLDLIARKIGHETVHLYGNKSLVQSF 181

Query: 178 REPLSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               S  E+    +I F  G+ + + +++  WL   + P     + C   ++ L   Q  
Sbjct: 182 SNK-SPSEVSNVQIIGFERGERLKQHLDESGWLLKHN-PFN---MIC---SNQLVQWQLA 233

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP 265
                + L+PD+I + NPNL    +D   P
Sbjct: 234 QHTPSLILVPDHIAQYNPNLTIAFKDHFKP 263


>gi|194366348|ref|YP_002028958.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349152|gb|ACF52275.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 301

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 127/290 (43%), Gaps = 8/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA  GSF  AAE L LS   + + I  LE  +G++L  R  R  +LT+ G    
Sbjct: 7   LRTFAKVAEVGSFAAAAEALDLSPQLVGKHIQALEQHLGVRLLNRTTRKQSLTDFGQAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  +   + +  +P G+LRI+  +  G + L   +  ++  YPD+Q+ L 
Sbjct: 67  ARARVILEEVEGAEQLAEVARGRPMGRLRISAPVTFGVHALGPAVVAYMQQYPDVQVDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N  +DI  D  D   R    +  S L+ R+L    +   A+P YL +        +L 
Sbjct: 127 LSNSLVDIVEDGYDLVFRTGD-LADSGLVARRLGPYPLVLCASPAYLASRPAIAHPSDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + F   I +    F      D  +   P  S   VN    ++   V G G+ L P 
Sbjct: 186 RHECLGFAHSIIRTRWSFR---DADGSVLTVPVSSRFMVNQAEPLLTAAVGGLGLILQPY 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++        LV ++ D +  S  +   YP   + T KL++F +F   +
Sbjct: 243 EMLAAALARGELVEVLPDHVPVSTWINLVYPRDRQLTPKLRSFLDFCLAR 292


>gi|330505841|ref|YP_004382710.1| putative LysR family regulatory protein [Pseudomonas mendocina
           NK-01]
 gi|328920127|gb|AEB60958.1| putative LysR-family regulatory protein [Pseudomonas mendocina
           NK-01]
          Length = 342

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 129/272 (47%), Gaps = 13/272 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  +  SGS T AAE+L+L++S++ + ++ LE  +G +L  R  R   LTE G  
Sbjct: 46  DGVELFLQIVESGSLTEAAERLNLTRSAVGKGLARLEARLGTRLLQRSTRRQWLTEDGQA 105

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +LE  +  L+    +P G+L+ +  +  G +     L   +  +P+++++
Sbjct: 106 YYEHCLRARAELEAAEAVLESGRQQPRGRLKASVPLAFGHHYAAPALWRLMDSHPELEVE 165

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQ 184
           +   ++ +D+  +  D A+R+     S  L  R+L    M   AAP YL+   EP+  I+
Sbjct: 166 ISFSDRRVDMLQEGFDLAVRIGALPDSDRLSARRLGEQVMSLGAAPAYLQR-HEPIERIE 224

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           +L +H LI +G   P       W LA     +   RI S L ++   S+    + G G+A
Sbjct: 225 DLARHRLIGYGSAAPSP----GWQLADEQGRMHHARIASALWLDDLQSVADAAIAGMGLA 280

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
            LP +++        ++   + P    Y C P
Sbjct: 281 WLPSWLLAHY-----VLRGQLQPVLAAYRCQP 307


>gi|307128805|ref|YP_003880821.1| transcription regulator [Dickeya dadantii 3937]
 gi|306526334|gb|ADM96264.1| Transcription regulator [Dickeya dadantii 3937]
          Length = 296

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 133/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  SGSF+ A+ +L + Q +IS+ I  LE ++ +KL  R  RGLT TE G + +
Sbjct: 7   LETFICVYESGSFSAASRRLGIGQPAISKAIMQLEQQLAVKLLLRSTRGLTPTEAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +    +L   Q  ++  + + SG LR++  +   +  +   L  F+  +P +++ +I
Sbjct: 67  EQVAPALQQLHEAQDGVRGGNGELSGYLRVSAPVTFARLHVLPRLHVFMSQHPQLKVDII 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  +  D A+RL + ++ S L  RK+ +  M   A P Y      P S + L+
Sbjct: 127 LDDRPVDLIAEGIDVALRLGE-MKDSGLTARKIGSAPMRLLATPAYFAARGTPASPEALE 185

Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + +     +     NWL    DR         ++ ++   + +  + G+G+ +   
Sbjct: 186 DHDAVIY----LQTDAPGNWLFCRDDRQCRVTMSGRIRTSAAEGVREAVLAGNGLTVASA 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++      +  +   + D       ++  YP     + + +AF  F+
Sbjct: 242 WMFAPELASGAVTTALADWHIGVMDLWAVYPGGRLTSARARAFTEFV 288


>gi|258624968|ref|ZP_05719894.1| putative transcriptional regulator [Vibrio mimicus VM603]
 gi|258582747|gb|EEW07570.1| putative transcriptional regulator [Vibrio mimicus VM603]
          Length = 309

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 144/291 (49%), Gaps = 11/291 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR  SFT AA ++ ++++++S+ +  LE ++ ++L  R  R ++LTE+G +L  + 
Sbjct: 14  FAHIARHRSFTKAASEMGITRAALSQHLKALEQQLQVRLINRTTRNMSLTEEGQRLLDIL 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 +E    EL +S V+PSG +RI+ +    + L++ +L EFL  YP I+++LI+D+
Sbjct: 74  QPALMSIEQVVNELNDSHVEPSGLIRISVSRTAARLLIEPHLGEFLSRYPKIRLELIMDD 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              +I  +  D  IRL   +    +       +      AP Y K    P + ++L+ HN
Sbjct: 134 GFSNIVAEGVDAGIRLGISLDEHMVAVPITPPLTTAIVGAPDYFKRNGTPQNPEDLEAHN 193

Query: 191 LITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            + +       ++ ++ L + D      + EP+ + +  N   S++Q  + G G+    D
Sbjct: 194 CLAYRFTSSGTIDHWS-LTSPDIEKHTVVFEPKGNAV-FNDDHSMLQAAIQGVGLVKHID 251

Query: 247 YIVKDNPNLVRIMEDVITP---SFTVYFCY-PEALKNTGKLKAFRNFIFLK 293
             V+ + N  R +  V+ P   SF  ++ Y P       K++   +F+  K
Sbjct: 252 LWVEKHINEGR-LSRVLAPWCKSFPGFYLYIPSREHMPKKIRVLMDFLIEK 301


>gi|239504242|ref|ZP_04663552.1| transcriptional regulator [Acinetobacter baumannii AB900]
          Length = 310

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 117/253 (46%), Gaps = 9/253 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T + H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRI-GALTDSSFHARIFGTQNYHLAASPQYVAKYGTLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              EL++H  + +     K  E  N WL   + +  +  P    L  N+  S+M   + G
Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWLVRKSNEEWVHYPITPLLSSNNAESLMTAALHG 239

Query: 239 SGIALLPDYIVKD 251
            GI L PD+++ +
Sbjct: 240 MGIVLFPDWLIGE 252


>gi|238793749|ref|ZP_04637371.1| HTH-type transcriptional activator aaeR [Yersinia intermedia ATCC
           29909]
 gi|238726990|gb|EEQ18522.1| HTH-type transcriptional activator aaeR [Yersinia intermedia ATCC
           29909]
          Length = 303

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 113/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LETE+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVECGSFTGAARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + + L
Sbjct: 66  YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P      
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233
                       P  M +F+WL    RP     +  P     Q+        N   ++++
Sbjct: 181 ------------PSDMTNFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLNAGAGIAYAP 240


>gi|238029024|ref|YP_002913249.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
 gi|237880601|gb|ACR32929.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 304

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 139/289 (48%), Gaps = 12/289 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W  L VF  VAR  S T A ++L +  S++ R+++ L+  +G +LF +  R L+L+ +G
Sbjct: 5   EWTDLMVFVEVARGPSLTAAGQRLGIDLSTVRRRLATLQDTLGRELFQKQGRSLSLSVEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++  +   +         +  ++    +G ++++T    G   L   L   +  +P + 
Sbjct: 65  ERIFHIAQRMEMLASEISNDFSDAERDLNGVVKVSTMEGFGSFYLAPRLTGLVKAHPGLS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           IQLI     ++++   AD ++ + KP +   L++ KL    +  +A P Y++    P ++
Sbjct: 125 IQLINSPHILNLAEREADISLNMMKPHRGRFLVE-KLAEFSVGLFAMPSYIEANGMPETM 183

Query: 184 QELDKHNLITF-GDLI--PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +L +H  +T+  DLI  P  +    WL  +   + EPR+  L  +S ++       G+G
Sbjct: 184 ADLKEHTFVTYVEDLISVPYVL----WLPEI---LPEPRVQ-LSCSSLVAQYHATCAGAG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +A+LP ++    P LVR+  + I      +      L+   +++A   F
Sbjct: 236 LAMLPLFMAIKEPRLVRLFPEKINLMRDWWMVVHRDLEAVPRIRAVMEF 284


>gi|116254771|ref|YP_770607.1| putative LysR transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115259419|emb|CAK10557.1| putative LysR transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 294

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 145/293 (49%), Gaps = 17/293 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + ++L  F  V  +GSFT AAE+L ++++ +S+Q++ LE E+   L  R  R +  TE
Sbjct: 3   AVNLNRLAYFAAVVDTGSFTKAAERLAITKTVVSQQVARLEAELKTSLLLRTTRRVEPTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     ++ +      E+  ++ +P+G LRIA   D G + +      F+  YP 
Sbjct: 63  AGKLLYARCVLIFREAGDAVDEITRANSEPTGMLRIAAPNDYGASTIAPIAAAFIQKYPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK----NC 177
            +++L+L +  +D+  +  D +IR+   +  SS   R++ +      A+P +      N 
Sbjct: 123 CRVELLLADTKMDLLANQIDLSIRVGW-LDDSSYQARRIGSFRQFLVASPSFSATLSLNS 181

Query: 178 REPLSIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            E ++ Q     NL     ++ + ++ DF      DR     + S L  NS  +++   +
Sbjct: 182 PEDVAGQPF-IANLALKEPVVWRFIQGDF------DRRTVRMQQS-LMSNSTPAVLAATL 233

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+GI++LPD++  ++     L+R++ D   P+  +Y  YP A     K+ AF
Sbjct: 234 AGAGISVLPDFLAGEHIEAGRLIRLLPDWTLPAGGIYVVYPAARFRPPKVTAF 286


>gi|260580803|ref|ZP_05848629.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae RdAW]
 gi|260582693|ref|ZP_05850481.1| DNA topoisomerase I [Haemophilus influenzae NT127]
 gi|1139588|gb|AAC43726.1| ORF2 [Haemophilus influenzae]
 gi|260092620|gb|EEW76557.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae RdAW]
 gi|260094259|gb|EEW78159.1| DNA topoisomerase I [Haemophilus influenzae NT127]
 gi|1587741|prf||2207242B ORF 2
          Length = 305

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 136/289 (47%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     + + +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GIA L
Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|134291770|ref|YP_001115539.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134959|gb|ABO59284.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 305

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   
Sbjct: 6   SMRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  V  +++  +  +  +   P G+L++     + + ++   L EFL  +P I I+L
Sbjct: 66  YERSVAVLREIDDMEASVSHARNVPRGRLKVNLPPAMARQVVVPALPEFLEAHPGIMIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ ID+  +  DC +R+   +  S +I +++ ++     A+P YL    EP ++ +L
Sbjct: 126 GVTDRQIDLVGEGVDCVVRI-GALDDSGMIAKRIGSLTTCTCASPAYLARFGEPETVDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
            +H  +    +         W   VD   GEPR+      + VN   + ++  V G G+ 
Sbjct: 185 AQH--VAVSHISADTGRPRVWDYVVD---GEPRVVQMCGTVAVNDADNYIECGVAGIGLI 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               Y+V     +  L  ++     P   +   YP       KLK F +++
Sbjct: 240 KTSLYLVDPYLKSGRLREVLTAFNAPPRPISVLYPPNRHIPVKLKVFVDWL 290


>gi|289676526|ref|ZP_06497416.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
          Length = 252

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 118/245 (48%), Gaps = 9/245 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA  GSFT AAE+L+L+ S+IS+ I+ LE  +  +LF R  R L+LTE G   +R 
Sbjct: 12  VFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGETFYRT 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + V   LE  +I L  +  +P GK+RI      G+  +   + +F+  +P +Q  +   
Sbjct: 72  CTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQPHVSFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDK 188
           ++ +D   +  D  +R+       + I  +        + A+P Y+    +P ++ +LD 
Sbjct: 132 DRYVDPVHEGIDIVVRIGGSDAWPAAIAHQFFGTQKLIFCASPEYVNQYGQPRTVSDLDA 191

Query: 189 HNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           H  I +G      IP   +       ++R I  P I+   V      +   + G GIA L
Sbjct: 192 HQCIGYGQNDGMAIPWYFKG-RQPGDMERRIMHPHIA---VGDGEGEVMAVLAGLGIAQL 247

Query: 245 PDYIV 249
           P ++V
Sbjct: 248 PTWLV 252


>gi|270261694|ref|ZP_06189967.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270045178|gb|EFA18269.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 309

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 136/295 (46%), Gaps = 22/295 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR GSFT AA QL ++  ++S+ I  LET +G++LF R +R + L+++G   +
Sbjct: 8   LPFFEAVARLGSFTQAANQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLSDEGKIFY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +    +++    +L+    +PSG LRI         L+   L+EF   YP++Q++L 
Sbjct: 68  RRVAPAMSQIDVAADDLRILRGQPSGLLRITLPQLAASLLVMPYLEEFQARYPEVQLELF 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHYLKNCREPL 181
            D+   D+ +   D  IR+R  +Q   +       QR++V       A+P YL     PL
Sbjct: 128 TDDHFSDLVLGSFDAGIRMRAMLQKDMIAVPIDNGQRRVVI------ASPGYLAQRGVPL 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +   L +HN + +    P   +   W     D  +       L  N    I    + G G
Sbjct: 182 TPAALSEHNCLRY--RFPGSGKFEPWYFRQNDEHLSLEVGGSLIFNEDRLIKDAALAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +       V+   +N  LV ++ D    +P F +YF  P +     KL+ F +F+
Sbjct: 240 MTQRFRGTVQRELENGQLVEVLADYAGDSPGFFIYF--PASRHMPLKLRVFVDFM 292


>gi|167573428|ref|ZP_02366302.1| LysR-family transcriptional regulator [Burkholderia oklahomensis
           C6786]
          Length = 306

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 15/296 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 5   DRFDVFRAVVEAGSFTGAANVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVALTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    V  + E    E +       G LR+ +T++    ++   L+EF   +P ++++
Sbjct: 65  FYKRCLRVLAEAEEAIDEARGEHGGMRGSLRVTSTVEYALKVVAPALREFTSQHPALRVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK--LVTIHMHAYAAPHYLK-----NCR 178
           L       D+  D  D AIRL +  Q   L  R   L T  +    +P  L         
Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRFEQFQDLPYRGVCLDTYDVRPVVSPALLAERGVVRIE 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVL 237
            P ++  L +        +    + D      V RP  +P++    V    S+++ +   
Sbjct: 185 SPDALARLPQLGHSRLSQVASWLLRDREGREHVFRPAAKPQM----VADNASVLRAFAQQ 240

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP+++V+   DN  L+  + D   P  +VY  YP       K++A+ +F+
Sbjct: 241 GSGVALLPEWLVRDDLDNGTLIDALPDYRFPPQSVYALYPSTRHVPQKIRAWIDFM 296


>gi|116250075|ref|YP_765913.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254723|emb|CAK05797.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 299

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 20/296 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L+ F  VA +G  + AA +L +S+S +SR++  LE E+G++L  R  RG  LTE 
Sbjct: 1   MDIEELQTFVEVADAGGVSPAALRLGVSKSIVSRRLFRLEAELGVQLLARTTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118
           G     VT   Y      +I++   ++ P+    G+LR+A  +  GQ      L E    
Sbjct: 61  G-----VTFRDYAARVCAEIDVARETILPAGDLRGRLRVAVPLSFGQTHFAPILAEMARR 115

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P + I     ++ +D+  +  DCAIR+   +Q S+LI R++  I+    A+P Y+K   
Sbjct: 116 HPQLHIHTCYSDRFVDLITEGYDCAIRVGY-LQDSNLIARRVGPIYGKFVASPDYIKAHG 174

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P + +EL  H  +  G    + M D + + TV RP G       + ++  +++   V G
Sbjct: 175 SPETPEELIAHEALMQGTEAWQLM-DGDKIITV-RPQGR-----FKADNGTALVAAAVAG 227

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GIA LPD +  +   +  LV +M     P    Y   P       K++     + 
Sbjct: 228 LGIAYLPDCLTHEFIASGALVPVMTHYPPPPAGAYVIRPPGQHPARKIRVLTELLI 283


>gi|237800669|ref|ZP_04589130.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023528|gb|EGI03585.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 305

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFAKAAESLHVPRASVTIMIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +       ++P G LRI   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYLRCVSLLADLEEAEAAFSSKGIEPKGLLRIDVPVSLGRMIVIPALPEFTRRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YLK    PL + 
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DDALVARPLGSLTQITCASREYLKRYGTPLDLH 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243
           +L +H +I +     +  + +      D  + +  +   + V+S    +  C  G G+  
Sbjct: 183 DLRQHQVIEY--FATRASKRYGLEFMADGELDDYGMERSIAVSSAEGYVAACDAGFGLIQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V        L+ ++ +   P   +   YP   + + +++ F +++
Sbjct: 241 VPRYHVAAQLRTGALIEVLREYRPPPLPLTALYPPHRQLSRRVRVFVDWL 290


>gi|158423621|ref|YP_001524913.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158330510|dbj|BAF87995.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 324

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 138/291 (47%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+F+ A+  L + ++++++ +  LE  +  KL +R  R +T+T  G   +
Sbjct: 7   MRCFIGVVEAGTFSRASTVLRVPKATLTKNVQALEAHLRTKLLHRTTRRVTVTPDGEAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE     +  S   P G+LR+  +  L   LL   L +F   YPDIQI L 
Sbjct: 67  ERAVRLLADLEDLDSTMAVSQANPQGRLRVDISAALATMLLIPALPDFHARYPDIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  +  DC IR  + +   SL+ R++  +H    AAP YL+    P    +L+
Sbjct: 127 VTDDVVDLLGENVDCVIRAGQ-LADQSLVARRIGEMHSVLVAAPGYLEAHGTPAHPLDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLAT--VDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +    G   P+     +   +   D  +   G   ++    N+Y++     + G GIA
Sbjct: 186 TSHR-AVGYFKPRMGRSLSLTLSKDADEAVEVNGRYMLAVSDSNAYITA---AMAGIGIA 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++P ++ +   ++  LV ++ +   P+  +Y  +P +   + +L+ F +++
Sbjct: 242 MMPVFMARPHIESGALVPVLTEWRAPAKPIYAVFPPSRHLSNRLRVFVDWV 292


>gi|146311552|ref|YP_001176626.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145318428|gb|ABP60575.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 297

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 126/251 (50%), Gaps = 9/251 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+WD  R+F  +AR+G+ + AAE +++  +++SR++  LE  + + LF RH  G  LT+ 
Sbjct: 5   FNWDDTRIFLAIARAGTLSGAAEAMNMGIATLSRRLDRLEKSLSVPLFSRHQSGYRLTDD 64

Query: 63  GSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G   L    +  Y  L   ++   +  V  +G++R+AT+ +L  + +  +L   +  +PD
Sbjct: 65  GEALLEHAEALEYAGLAFGEMARLQGHV--AGQVRLATSDNLAAHYILPSLNALMDKHPD 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++++   + +++    AD AIR+ KP  S +L  ++L  +    Y A  Y+K C E  
Sbjct: 123 LRVEVLSGVQSVNLHRRDADLAIRMIKP-DSGNLTLKRLGNVGFGLYGAAAYIKTCAEGP 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +         + +    P+  +       V R +   R   ++ N+ ++ +     G G+
Sbjct: 182 ADVAFSHAQYVGW----PESHQHLPAARWVTRML-RGRACRMEANTLVAQLAAVSAGIGL 236

Query: 242 ALLPDYIVKDN 252
            +LP ++ + N
Sbjct: 237 GVLPHFMARKN 247


>gi|126175566|ref|YP_001051715.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125998771|gb|ABN62846.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 339

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 107/188 (56%), Gaps = 1/188 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F  V + GSF  AA+ L L +SS+S++I+ LE ++G++L  R  R L LT+ G++L
Sbjct: 23  NLYIFRCVTQLGSFQAAADALQLPRSSVSKKIAQLEHQLGLRLLQRSTRQLNLTDSGTEL 82

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +T  +   L  T    +++  KPSG+++I+++  LGQ  L   L +   L+P+I I +
Sbjct: 83  LAITDSLTELLSNTAKLTEQAQAKPSGRVKISSSTILGQRYLLPLLPKLKQLFPEIVIDI 142

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+     D A+R+ + +  SSL+ R++ T     +A+P YLK   +     +L
Sbjct: 143 NLDDRVVDLIELGIDIALRVGE-LPDSSLVARRIGTKSWSCFASPAYLKQAAKLEVPSDL 201

Query: 187 DKHNLITF 194
             H  + F
Sbjct: 202 AAHQCLIF 209


>gi|76818083|ref|YP_336378.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|167829598|ref|ZP_02461069.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|226194034|ref|ZP_03789635.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254185728|ref|ZP_04892246.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254264996|ref|ZP_04955861.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|76582556|gb|ABA52030.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|157933414|gb|EDO89084.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|225933979|gb|EEH29965.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254215998|gb|EET05383.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 313

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 126/296 (42%), Gaps = 25/296 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA+ LHL+QS+IS+QI  LE  +G  LF RHARGL LT +G  LH
Sbjct: 13  LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYLLFVRHARGLALTPKGGALH 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T   +  L  T  +L      P   L+++         L   L EF  L+P   ++L 
Sbjct: 73  EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ID   +S D  D AIR   P    +L    L    + A AAP YL   R P    
Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGTLHVEPLFDESLVAAAAPAYLD--RHPPRAT 185

Query: 185 ELDKHNLITFGDL-----IPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                +++   D       P+ +E   WL A V    G PR    + N     +   V G
Sbjct: 186 AKWVSSVVPLHDASAWPEAPRYVEWRTWLDAVVPGYAGAPRGP--EFNLASLAIAAAVAG 243

Query: 239 SGIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+ +    +V D     R++      V  P+     C   A     ++KAF  ++
Sbjct: 244 QGVVVCRQALVDDEIARGRLVNVFARRVPAPAQYKAIC---ARPEDARVKAFVGWL 296


>gi|322515694|ref|ZP_08068667.1| LysR family transcriptional regulator [Actinobacillus ureae ATCC
           25976]
 gi|322118239|gb|EFX90531.1| LysR family transcriptional regulator [Actinobacillus ureae ATCC
           25976]
          Length = 291

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 24/293 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  S SF  +AEQL + +S++S+ IS LE    +KL +R  R +  T +G   +
Sbjct: 7   MRAFVRVVESLSFHKSAEQLGIPRSTLSKWISDLEQHYAVKLLHRSTRTVMPTAEGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  + ++ +      G LR+   +   + L    L +F   YP I++ L 
Sbjct: 67  LQAVRLLAEFDELEQQMHDKHRVVKGHLRVDMPMLFAEQLFIPKLPDFYQRYPQIKLTLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ++I+ D  DC IR+ + +   +LI RK         A+P YL     P +  EL+
Sbjct: 127 ISDRAVNIAQDGVDCVIRIGE-VHDQTLIGRKFTDFDFVTCASPAYLTEYGVPQTPNELE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI-- 241
            H LI +         D N      RP+  P++   Q     N    I+     G GI  
Sbjct: 186 NHRLIGY-------FSDING----TRPLCFPQVEMNQFHYSANGANGIVAMLKAGLGIGQ 234

Query: 242 ---ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              AL+  ++      LV I+ D   PS   Y    E  K + +L+AF ++++
Sbjct: 235 PLRALVQTWLYSG--ELVEILADYPHPSLPAYLLTHER-KQSARLRAFSDWVW 284


>gi|307544103|ref|YP_003896582.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307216127|emb|CBV41397.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 315

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 126/266 (47%), Gaps = 9/266 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  +++F  VARS     AA +L L  S++SR+    E  +  +LF R   G  LTE 
Sbjct: 2   LDWQDIQIFLEVARSQRLADAARRLGLDHSTLSRRTRRFEQRLNTQLFERSTHGYHLTEA 61

Query: 63  GSKLHRVTSEVY-HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G +L     E+  H  E ++  L +   + SG++R+  T   G  ++   L  F   +P 
Sbjct: 62  GHRLLAHAEEMARHAFEASE-SLTDQDHRISGQIRLGVTEGFGTWVIAPLLAAFCDRHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   + +++S   AD AI + +P  S  L+  +L    +  Y +  YL     P 
Sbjct: 121 VTLDLLALPRVVNLSRHEADLAITIERP-SSPGLVISRLCDYRLRLYGSQDYLHRHGTPR 179

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRP--IGEPRIS-CLQVNSYLSIMQYCVL 237
            + +L +H LI +  DLI    E  N+L  +  P  IG P     ++  S  +    C+ 
Sbjct: 180 RLADLGQHRLIGYIDDLI--FSEQLNYLDPLLDPAVIGHPGPHFAMRGTSVTTQHSACLR 237

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVI 263
           G+G+A+LP ++    P L  ++ D +
Sbjct: 238 GAGLAVLPCFMGTTTPTLSSLLVDEV 263


>gi|304410463|ref|ZP_07392081.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307304555|ref|ZP_07584305.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304350947|gb|EFM15347.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306911957|gb|EFN42381.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 299

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 133/282 (47%), Gaps = 19/282 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +++  D +R+F+VVA+ GSF  AA+ L +  S++SR+I+ LE  +G++L +R A  + LT
Sbjct: 3   LNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +       ++ +L     EL     +  GKLRI+  I+     L  +L  F   YP
Sbjct: 63  ATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRHYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I I L L N +ID+S +  D A R+ +P +    I R L TI      A          
Sbjct: 123 NIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISF-VLCASTSATQWHAL 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-----EPRISC-LQVNSYLSIMQY 234
            SI+ L++H +I     I K ++ +     +    G     EPR +  L V+      Q 
Sbjct: 181 QSIEALEQHPVI-----IAKPVKTWRLQHNI---TGQNFEFEPRGNIKLAVDDMAIASQA 232

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            V G GI LLP  +  +   +  LV+I+ +      T Y  Y
Sbjct: 233 VVAGLGIGLLPISMASEQIQSGKLVQILPEWQGIPRTAYLMY 274


>gi|217418966|ref|ZP_03450473.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217398270|gb|EEC38285.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 358

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 28  NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 87

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 88  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 147

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 148 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 207

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 208 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 262

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 263 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 308


>gi|167627607|ref|YP_001678107.1| LysR family transcriptional regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597608|gb|ABZ87606.1| transcriptional regulator, LysR family protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 294

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 104/192 (54%), Gaps = 2/192 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT-LTEQ 62
           ++D + +F  +   G+FT  A+ L++SQS++SR+I  LE  V +KL  R++RGL  +TE 
Sbjct: 2   NFDDIFIFVRLIDIGTFTELAKHLNVSQSTVSRRIQNLEESVNMKLIKRNSRGLIEMTED 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R   ++  +  TT  ++   S + SG L++        N+L   L  F   YP++
Sbjct: 62  GESFYRSFKDIEKQANTTLQQIVNKSKEISGTLKVGIPKLFLDNILANKLGIFYARYPNV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++        +D+  D  D AI ++KPI SS  I + LV      YA+  Y++   +P  
Sbjct: 122 KLVFSYTAGIVDLVKDDIDIAITIKKPITSSCTI-KTLVRAKNKLYASQDYIQTYGQPNL 180

Query: 183 IQELDKHNLITF 194
           +++L+ H+++ F
Sbjct: 181 LEDLESHDVVGF 192


>gi|221067386|ref|ZP_03543491.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220712409|gb|EED67777.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 287

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 18/297 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR+F   AR  S T AA++LH++Q+++S+ I  LE  +G  LF R  RGL LT
Sbjct: 1   MQLPLNALRMFDAAARHLSLTRAAQELHVTQAAVSQHIRNLEERLGKPLFRRLPRGLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L  V ++ + ++E +  ++ E   +P   L +          L   L +F  L+P
Sbjct: 61  DEGQALWPVVAQSFERIEQSLQQVAEP--RPREILSVGVVGTFAIGWLIPRLSQFQQLHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L+ +N  +D++ +  D A+R        +  Q  L+   +     P   +  REP
Sbjct: 119 YIDLRLLTNNNRVDLAGEGLDAAVRFGDGAWHGTHAQ-MLLRAPLSPMCTPMLAQQLREP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +  L+       +  E   W A +D+    P       +S L++ +    G+G
Sbjct: 178 ---ADLARQTLLRSY----RTQEWEGWFAGLDQTA--PLARGAMFDSSLTLAEAAAQGAG 228

Query: 241 IALLPDYIVK---DNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IALLP  + +       LVR    +V T ++  +  Y ++ + +  L+ FR ++  +
Sbjct: 229 IALLPARMFEHMLQQGRLVRPFAHEVDTGAY--WLTYLKSRQASSALQTFRQWLMTQ 283


>gi|169796328|ref|YP_001714121.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|301347079|ref|ZP_07227820.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB056]
 gi|301510611|ref|ZP_07235848.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB058]
 gi|301595033|ref|ZP_07240041.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB059]
 gi|332852016|ref|ZP_08433883.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332871769|ref|ZP_08440209.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149255|emb|CAM87138.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|332729593|gb|EGJ60931.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332731239|gb|EGJ62537.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 301

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 137/261 (52%), Gaps = 14/261 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+  A   +++ S++S+ IS LE  +G++L  R  R   LT +G + 
Sbjct: 11  ELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++ + L+  +  +  + + P G++RI T+     + L   +  F   YP+I+++ 
Sbjct: 71  YEQGIQILNDLDELEQSVTANHI-PKGRIRIHTSFSYWTHFLLPCISLFNQRYPEIELEA 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ I++     D AIR   P++SS+L+ R L + + H+  +P Y++    P    EL
Sbjct: 130 HLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTYKHSVCSPVYIEKYGCPEHPDEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +H L+     +    ++  WL   AT +  +   ++  L+VN   +I+Q  + G+GIA 
Sbjct: 189 HEHQLLD----VSYQRQNKTWLFKKATQEISLTPSKV--LKVNHGEAILQLALAGAGIAQ 242

Query: 244 LPDYIVKD---NPNLVRIMED 261
           L ++ +++      LV+I+ED
Sbjct: 243 LNEFQIRNALQQKQLVKILED 263


>gi|167033289|ref|YP_001668520.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859777|gb|ABY98184.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 306

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 133/295 (45%), Gaps = 12/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F + A SGSFT AA    ++ +++SR ++ LE  +G +LF R  R + L+  G   
Sbjct: 12  SLELFCLAADSGSFTAAAALAGVTPAAVSRNVARLEERLGARLFVRTTRQMRLSAAGHAY 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +   +L   + ++    ++PSG LRI+       + L   L  F   YP +++ +
Sbjct: 72  YLQCRQALGQLVEAERQVTGGQIEPSGLLRISAPTPYAHHRLLPLLPRFRQRYPQVRVDV 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+++D + +  D AIR R+P   S L+ R+L    +   A P YL     P    +L
Sbjct: 132 HVSNRNVDFAEEPFDLAIRGREPA-DSRLVARRLEDAELVVVATPGYLAGAGMPQVPHDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPI---GEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H  I F   +P       W    D R +    +  ++CL    +L+       G G+ 
Sbjct: 191 QHHECIQFE--MPSSGRRPPWTFRQDGRQVEVETQGALTCL--GDFLATATLVRHGGGLM 246

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               + V+D   +  LV ++      S      YP+A     +++ F +F+F +A
Sbjct: 247 QAYRFTVQDALVSGELVEVLTAFGGTSRPFMLIYPQARHMPLRVRVFIDFLFAEA 301


>gi|76818993|ref|YP_337480.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|76583466|gb|ABA52940.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
          Length = 354

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 24  NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 83

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 84  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 143

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 144 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 203

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 204 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 258

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 259 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 304


>gi|89067638|ref|ZP_01155092.1| hypothetical protein OG2516_00514 [Oceanicola granulosus HTCC2516]
 gi|89046608|gb|EAR52663.1| hypothetical protein OG2516_00514 [Oceanicola granulosus HTCC2516]
          Length = 294

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 130/294 (44%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  V+R GSFT+AA++L+++QS++SR I GLE  + ++LF R  R + LTE G  
Sbjct: 9   NALRTFEAVSRHGSFTNAADELNVTQSAVSRMIKGLEEHLELQLFERAGRQIRLTEDGVY 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S+    LE    EL ++     G L I      G   L   L  F+ L+P++ + 
Sbjct: 69  YSEKISKAMDILEVASRELIDTKAG-RGTLSIGMLPTFGTKWLLPRLGSFMQLHPELTVD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   + ++D + +  D AIR        +  +  L++  +    +P  +          +
Sbjct: 128 VTSSDGELDFADERIDVAIRFGYGNWPGARAE-PLMSEELQVVCSPRIMDGPYPLTDYAQ 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+LI      P      +WL  V     E     L++  +  ++Q    G GI LLP
Sbjct: 187 LRRHSLIAHSSR-PGTWS--HWLQAVGAST-EGYDKGLRLEHFYMVLQAAKSGLGIGLLP 242

Query: 246 DYIVKDNPNLVRIMEDVITPSFTV--------YFCYPEALKNTGKLKAFRNFIF 291
            Y+  D+     I    +T  F V        Y   P    +  +++AFR ++ 
Sbjct: 243 SYLAADD-----IANGSLTAPFPVRVVSPGGYYLVTPWDKTDLPRVQAFREWVL 291


>gi|323498515|ref|ZP_08103508.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323316404|gb|EGA69422.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 306

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 142/277 (51%), Gaps = 17/277 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           KL +   V+R+GSF  AA++L+L +S +S+QI  LE ++G+KL  R  R ++LT  G ++
Sbjct: 6   KLTLLLEVSRNGSFAKAADKLNLDRSVLSKQIKQLEEQLGVKLVNRTTRSMSLTSVGKRV 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +V   LE T         +P+G LR+++    G+  LQ  +++FL  +P   I+L
Sbjct: 66  VEQAEKVTLILEDTISIADSHHSEPTGHLRVSSATMFGRVYLQAAVEKFLEKFPKASIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+++ +D+  +  D   R+  P++ SS+I ++L    +   A+  ++     P S +EL
Sbjct: 126 LLNDERVDVVSEGFDIVFRI-GPMRDSSMIAKRLAENKVAIIASKDFVAKHGMPTSPEEL 184

Query: 187 DKHNLITFGDLIPKCMEDF--NWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240
            +   + +G+       +F  + L   D+  G+    P  S  +VN    I++      G
Sbjct: 185 VELPGVIYGN------SNFVVDKLQFADQDSGQSIVYPIKSNYRVNEAELIVESVKASIG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFT-VYFCY 273
            A +  +++    +   LV+++ D+  PSF  +Y  Y
Sbjct: 239 YAQIGQFMIPGDLEQMGLVQLLPDLYLPSFGDIYAMY 275


>gi|300689818|ref|YP_003750813.1| transcription regulator protein, lysR family (aaeR) [Ralstonia
           solanacearum PSI07]
 gi|299076878|emb|CBJ49491.1| putative transcription regulator protein, LysR family (aaeR)
           [Ralstonia solanacearum PSI07]
          Length = 298

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 128/297 (43%), Gaps = 30/297 (10%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V  +G+FT AA QL +S   + + +  LET +G +L  R  R  +LT+ 
Sbjct: 2   DKLRGMETFVAVVDAGNFTEAATQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     V  ++   +  ++    +PSG LR++     G  ++      F   +P +
Sbjct: 62  GRVFYEDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D++ +  D A+R+   +  + L+ + L    M   AAP YL     P +
Sbjct: 122 RVELDLSNRMVDLADEGFDLAVRV-GALGDADLVAKPLCAYRMVICAAPEYLARHGRPET 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPI---GEPRISCLQVNSYLSIM 232
             +L  H          +C+    W       L   DR      +P  SC   N    + 
Sbjct: 181 PADLPAH----------RCLSHMVWNSRNAWQLPGWDRTTPWRNDPAFSC---NDGHGLR 227

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              + G+G+ L P+ +V ++     LVR+++        V+  Y +      KL  F
Sbjct: 228 MAAIAGAGLLLQPEVLVAEDLASGRLVRVLQPYAPEPRPVHLVYRQDRSPLPKLTGF 284


>gi|237508790|ref|ZP_04521505.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|235000995|gb|EEP50419.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 358

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 28  NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 87

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 88  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 147

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 148 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 207

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 208 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 262

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 263 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 308


>gi|239997201|ref|ZP_04717725.1| LysR protein [Alteromonas macleodii ATCC 27126]
          Length = 299

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 136/297 (45%), Gaps = 20/297 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L VF+ +A  GS + AA QL ++  S+S  +  LE  VG+ LF R  R + LT+ G 
Sbjct: 6   FQQLIVFHAIADEGSISGAARQLEMAPPSVSHALKSLEASVGVPLFNRTTRRVELTDAGK 65

Query: 65  KLHRVTSEVYHKLETTQIELQES---SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            L + T   +H ++T  I  +E    S  P G +RI T     Q LL    +EF   YPD
Sbjct: 66  LLKQQT---HHAIDTLDIAFEEVNALSYTPRGTVRITTPRFAFQQLLAPYYQEFCERYPD 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++ +++  +++  D  D  IR    I+   + +R         + +PHY K    P 
Sbjct: 123 LKLEVSINDAAVNLITDGMDVGIRFGDRIEEGMVAKRLTNATKECLFCSPHYAKKYGLPS 182

Query: 182 SIQELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           SI  L +H L     IT   L P  +       +V  PI       + VN    ++    
Sbjct: 183 SIDSLQQHKLIQYRFITSNKLAPLHLWQNQQAVSVSMPI------AMVVNDTDLMIDAAK 236

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  + + +V +      LV ++++   P   ++  + +  +   +++A  +F+
Sbjct: 237 KGLGIGRIVEPMVDELFQTGELVPVLKENWFPYSGLFMYFQQHSQKAQRIRALIDFL 293


>gi|187924323|ref|YP_001895965.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715517|gb|ACD16741.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 344

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 129/287 (44%), Gaps = 13/287 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  GSF  A ++L + +SS+SR +  LE  +  +LF R  R  +LT +G   +   
Sbjct: 39  FLAVANEGSFARAGDRLGIGRSSVSRNVQKLEALLDARLFLRTTRSTSLTREGELFYENC 98

Query: 71  SEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                ++     +++E  +  P G LRI +    G+ ++   L+ F   YP+I ++L+L+
Sbjct: 99  QPGIERIAQALEDMRELRNGPPRGHLRIVSAPGFGRKIVAPLLRGFHTRYPEIALELLLN 158

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D + D  D +    + ++ S ++ R+L+ + M   A+P Y +    P  I EL  H
Sbjct: 159 DRPADFTTDRVDVSFHDGR-LEDSGIVARQLIPMQMLVCASPAYARRHGLPRHIDELADH 217

Query: 190 NLITFGDLIPKCME---DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             I F     +  E     N L    +P+ +        N    I+Q  + G GIA LP 
Sbjct: 218 RCINFLAASGRIREWEFKVNGLPQRRQPVAQ-----HTFNDPDLIVQAVLDGLGIAQLPA 272

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y V D      L+  +          Y CY    +   +++ F +++
Sbjct: 273 YQVCDLLAGGQLLSCLAQHAPEDGGHYLCYLSRKQLPARVRVFVDYM 319


>gi|293395045|ref|ZP_06639332.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422452|gb|EFE95694.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 295

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 11/285 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  +A+ GSF+ AA +L +  SS+ R I  LE ++G+ LF R  RGL LT+ G  
Sbjct: 8   EHLPIFLEIAQQGSFSAAARKLGMVPSSLVRHIDTLEQQLGVVLFIRSTRGLILTDAGDM 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   +   + EL   +  P G LR++     G+  L   L      +P + ++
Sbjct: 68  LKNRAIALQADIIAVRAELTSLNTAPQGVLRLSCLPTFGKTTLLPLLPTLTQRHPKLSVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D   +  D A+R+ +  + S+L   ++ T      A+  Y+     P S+  
Sbjct: 128 LDLTERQTDPKRELLDAAVRIGEQ-KDSTLYASRIGTQRWMMCASADYVARFGRPDSLAA 186

Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H LI  F    P C     W   +D P+       L+ + + +  Q  + G GIA L
Sbjct: 187 LTQHRLIGRFHKQQPAC-----WAQILDAPLLNQCNIVLRCDDFSAQRQATLSGMGIAFL 241

Query: 245 PDYIVKDNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAF 286
           P+++V D+    R++  +  P      +Y   P A K + KL A 
Sbjct: 242 PNWVVGDDVQANRLLALMGGPRGEEQAIYLMRPVA-KISAKLAAL 285


>gi|115372418|ref|ZP_01459727.1| transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370631|gb|EAU69557.1| transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 288

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 135/284 (47%), Gaps = 9/284 (3%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V  +G+F  AAE L L+QS +SR ++ LE  VG++LF R AR ++LT++G + +   + 
Sbjct: 3   AVVEAGNFVRAAEALGLTQSGVSRAVARLEQRVGVRLFDRTARAVSLTDEGRRFYEEVAP 62

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
               +E        ++    G LR+      G  +L   L EFL L+P++  +L++ ++ 
Sbjct: 63  HLAGIEDAATAATGAAATVRGHLRVNADAAFGHYVLAPRLGEFLALHPELSFELVVRDRI 122

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK--HN 190
            D+  +  D A+R  +P + SSLI R++    +   A+P Y+     P    EL +  H 
Sbjct: 123 GDLVAEGLDMAVRFGEP-EPSSLICRQIGRSQVLTCASPEYVARRGRPKHPSELARGAHE 181

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV 249
            I   +        F+W     R + +  +   L VN   S++   + G G+    ++ V
Sbjct: 182 CILVRNTW--TGRHFDWEFHQGREVVQVDVQGRLMVNDSGSLISAMLSGHGVGQPFEFSV 239

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   D+  LV+++       + V+  +        K++AF +F+
Sbjct: 240 RELIDSGRLVKLLPAWSDERYPVHVYHRSREFPAAKVRAFIDFL 283


>gi|332530215|ref|ZP_08406162.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040336|gb|EGI76715.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 304

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 131/271 (48%), Gaps = 12/271 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +A  GS T AAE L+LS++ +SR +  LE+ +G +L +R  R ++L+  G +  
Sbjct: 9   IRSFVEIADQGSLTRAAETLNLSRAMVSRHLENLESWLGARLLHRTTRKVSLSAAGEEAL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++       Q        +  G+LR+ T++    ++L  ++ +F  L+P I+I L+
Sbjct: 69  PRMRQMLELAADLQAVAGVRRSEAQGRLRVTTSLSFALSVLTQSVVDFQALHPRIEIDLL 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D A+R+   +   S++ R+L T      AAP YL +   P + ++L 
Sbjct: 129 TIDRSVDLVSERIDLAVRITNRLD-DSVVARRLATCRSVLCAAPSYLADRGTPAAPEDLA 187

Query: 188 KHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  IT  FG        ++  L    R + +     L  +    + Q  + G+GIA+LP
Sbjct: 188 AHRCITHAFG-----TRAEYR-LGRSGRLLTQAVSGTLSGHETAVLKQAALAGAGIAMLP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
            Y V +      LVR++ D    +  ++  Y
Sbjct: 242 TYFVVEEMRRGALVRVLPDHEPEALGIHALY 272


>gi|311277552|ref|YP_003939783.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308746747|gb|ADO46499.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 299

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 125/271 (46%), Gaps = 7/271 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+ L L + S+SRQI  LE  +GI+L +R  R + LT+ G   +
Sbjct: 7   MQLFIRVAELESFSRAADTLGLPKGSVSRQIQALENHLGIRLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+      Q      SG+LR+   + + +NL+   L  FL  YP I+++L 
Sbjct: 67  ERAKDLLSNLDELDGMFQHDPSSISGRLRVDMPVAVAKNLVIPKLPAFLQQYPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   ++ S L+ R+L  + +   A+  YL     P    +L 
Sbjct: 127 SSDRLVDVIREGFDCVVRV-GALKDSGLVARQLGKLTIINCASQGYLARFGYPERPDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H LI +   I    + F     VD  +   +    L VNS  +    C+ G GI   P 
Sbjct: 186 GHALIHYSANIGVRPQGFEM--KVDNAVRWVKTGGVLTVNSTETYQAACLAGLGIIQAPR 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
             V+D   +  LV I+         V   YP
Sbjct: 244 IGVRDALRSGQLVEILPQYRAEPMPVSLIYP 274


>gi|241664781|ref|YP_002983141.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240866808|gb|ACS64469.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 298

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 125/287 (43%), Gaps = 20/287 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R +  LE  +G+ LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTVGRHVDALERALGMSLFLRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L          LE T   L  ++        G +RI  +  +   +L   L +    YP
Sbjct: 68  SLR----PFAESLEATSAALLRAASSQGEGVRGTVRITASEVVAVEVLPPILADLHAAYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L+  N+  D+    AD A+R++ P Q   L+ R L  I +  +A   YL     P
Sbjct: 124 ELTLELVPSNRMEDLLRREADIAVRMQPPSQ-GVLVARHLGGIELGLFAHQRYLAQRGMP 182

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +I+EL  H LI +      +      F W+        +     L+ +S L+ +     
Sbjct: 183 TTIEELAGHTLIGYDKENAFLRSMRAQFPWV--------QRNRFALRTDSDLAAIAALRA 234

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G GI      + + N +LVR+  + I  +   +    E L+++ + +
Sbjct: 235 GFGIGFCQVGLARHNADLVRLFSEQIAITLDTWLAMHEDLRDSPRCR 281


>gi|255319115|ref|ZP_05360336.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262378144|ref|ZP_06071301.1| transcriptional regulator LysR family [Acinetobacter radioresistens
           SH164]
 gi|255303917|gb|EET83113.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262299429|gb|EEY87341.1| transcriptional regulator LysR family [Acinetobacter radioresistens
           SH164]
          Length = 312

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  SGSFT AAEQ+ L+ + +SR IS LE  +G KL  R  R   LT+ G+   
Sbjct: 13  MHAFLKVIDSGSFTAAAEQMELTTAQVSRLISELEGRLGTKLLQRSTRQHALTDIGASYA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   +E  + +    + +P G+LR+ +    G + +   + EF   +P + ++  
Sbjct: 73  EQCRQVLAMVEEAETQAMGMATEPQGRLRVLSMGSFGHHYISPVMAEFCQNHPKLTVEYR 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+     D ++ L + +  S  + R++ TI     A+P YLK   EP S+ +L 
Sbjct: 133 TSQNVPDLLGKGIDVSLYLTESLTDSRFVARQIGTIFSLLCASPAYLKKYGEPESLDDLQ 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KH  +   +  P     ++ ++             L  ++   ++       GIALLP +
Sbjct: 193 KHACLRLVN--PSITPQWHLISKNSCSYQVDITGPLIADTPELLLDMVQQDMGIALLPTF 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            V +      L R++ D  +P   VY   P            R+FI  K R W
Sbjct: 251 TVIEAVRTGRLCRVLADWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292


>gi|149190788|ref|ZP_01869053.1| LysR-family transcriptional regulator [Vibrio shilonii AK1]
 gi|148835350|gb|EDL52322.1| LysR-family transcriptional regulator [Vibrio shilonii AK1]
          Length = 300

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 139/295 (47%), Gaps = 19/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L VF  + + GS T AA++L ++  S+S  +  LE E+G+ LF R  R + +TE G 
Sbjct: 6   FNQLIVFNTIVQEGSITRAAKKLEMAPPSVSNALKALEQELGLPLFTRTTRRVEVTEAGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH  T     +L      + + S  P+G +R+     + Q L++    EF   YP IQ+
Sbjct: 66  LLHERTLHSISELSLAFESVSDLSRDPTGTVRVTMPRFVYQYLIEPIYAEFCHQYPHIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSI 183
           ++ + +  IDI  +  D  IR    ++   ++ R L T    A +A+P Y+++  +P   
Sbjct: 126 EISVSDATIDILNENFDLGIRFGNKVE-EGMVARPLTTSMKEAFFASPAYIEHYGQPSCP 184

Query: 184 QELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +L  H LI +       + P  +     + +V+ P      + + VN    ++   + G
Sbjct: 185 DDLKHHKLIQYRFISSNKIAPLLLNKQGEMLSVEMP------TSMVVNDTNLMVDAAIKG 238

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  L + +++ +     LV I+ED   P   +Y  +    KNT K K  R  I
Sbjct: 239 LGIGRLVEPMIQSHIAQKQLVPILEDYWYPYSGLYVYFH---KNTQKAKRVRVLI 290


>gi|37676920|ref|NP_937316.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|320159012|ref|YP_004191390.1| putative lactate-responsive regulator LysR family [Vibrio
           vulnificus MO6-24/O]
 gi|37201464|dbj|BAC97286.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319934324|gb|ADV89187.1| predicted Lactate-responsive regulator LysR family [Vibrio
           vulnificus MO6-24/O]
          Length = 299

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 8/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE+  L+ S +S++I+ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVEQGSFSKVAEENSLTNSVVSKRIARLEEEIGAQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF   +P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPTISGDLILADAVAEFCNQHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL   +
Sbjct: 124 MSLDNRFVDLVSGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKHGKPLIPSD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L +HN + +        E   W    ++     R++ C   ++  ++ +  + G GIA +
Sbjct: 183 LTQHNCLQYAYQTTGASE---WEFKGEKGNYIVRVAGCFSTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           P  +V     N  LV I  + +     +Y  YP
Sbjct: 240 PRCLVYHDFRNGQLVDIFPEQVGKKLGIYAVYP 272


>gi|301170116|emb|CBW29720.1| predicted DNA-binding transcriptional regulator [Haemophilus
           influenzae 10810]
          Length = 305

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 136/289 (47%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     + + +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GIA L
Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|15597730|ref|NP_251224.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9948591|gb|AAG05922.1|AE004681_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 303

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 140/290 (48%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  +   G+F  AA+ L L ++S+++ I  LE  +G++L  R  R ++LT  G 
Sbjct: 4   FQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +         P G+LR+     LG+  +   L EF   YP++++
Sbjct: 64  AYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPELEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL  +++ +D+  + ADC +R+ + +  SSL+ R L  +     A+  YL+    P  + 
Sbjct: 124 QLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPRQLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  + +    P     F++  +VD R    P  S + VN+  + +  C  G G+  
Sbjct: 183 ELGGHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P Y V     + +L +++ + + PS  ++  YP   + + +++ F +++
Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLALHAVYPSQRQLSPRVRVFVDWL 290


>gi|322614000|gb|EFY10936.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617892|gb|EFY14785.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625493|gb|EFY22319.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629958|gb|EFY26731.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632153|gb|EFY28904.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636497|gb|EFY33204.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643131|gb|EFY39705.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644648|gb|EFY41184.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651328|gb|EFY47712.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652756|gb|EFY49095.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659057|gb|EFY55309.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663241|gb|EFY59445.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668727|gb|EFY64880.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674469|gb|EFY70562.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678324|gb|EFY74385.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682418|gb|EFY78439.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684132|gb|EFY80138.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192312|gb|EFZ77544.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196260|gb|EFZ81412.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201408|gb|EFZ86474.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206482|gb|EFZ91443.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212074|gb|EFZ96901.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216979|gb|EGA01702.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220344|gb|EGA04798.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224392|gb|EGA08681.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228321|gb|EGA12452.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233412|gb|EGA17505.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237127|gb|EGA21194.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243658|gb|EGA27674.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246098|gb|EGA30085.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250878|gb|EGA34756.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257629|gb|EGA41315.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261836|gb|EGA45403.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266107|gb|EGA49598.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268651|gb|EGA52118.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 299

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 122/279 (43%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 7   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 67  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLPTFLHQYPGIALELC 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R   P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 127 SSDRQVDLLREDFDCVVRT-DPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 186 SHAVVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI   P   V++      L+ I+         V   YP
Sbjct: 236 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 274


>gi|296390569|ref|ZP_06880044.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 304

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 128/274 (46%), Gaps = 12/274 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D L  F V+   GSFT AAE+L  S+  +S++I  LE ++G+ L +R  R L+LT  G
Sbjct: 3   DLDDLAAFAVLHDLGSFTRAAERLGCSKGQLSKRIGVLEQKLGVTLLHRTTRRLSLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +  + E  +  +     +  G++R+   + LG+ L    L++F   +P ++
Sbjct: 63  AALLPEAQALLVQAERARQAVARLQERAEGRVRVTLPVSLGETLFDALLEDFQERHPLLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N   D+  +  D AIR     Q + L+ R L  +     A+P YL    EP   
Sbjct: 123 VELDLYNGLRDLVGEGFDLAIR-SGVEQDARLVARPLFVLQEITCASPAYLARHGEPQRP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242
            EL +   +    L         WL      +   R+S    +++ S+++   L G+GIA
Sbjct: 182 AELAERECL----LNSHYSGHEEWLYHRRHRLERVRVSGFLASNHYSLLKKAALAGTGIA 237

Query: 243 LLPDYIVKDNPN------LVRIMEDVITPSFTVY 270
            LP Y+V D         L+R  +   TP F V+
Sbjct: 238 RLPSYMVHDELGDGRLAWLLRAYQTRSTPMFLVH 271


>gi|157371338|ref|YP_001479327.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323102|gb|ABV42199.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 299

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 126/274 (45%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLISFLMVARERSFTKAAAKLGVSQSALSHAIRGLEERLELRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E+    L E   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  ERLLNSIGPRFAEIESELDALSEMRARPAGNIRITAGEHAVDSVLWPVLKTFLADYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ LDN   DI     D  IRL + +    +  R    + +   A+P Y +    P + 
Sbjct: 125 VEITLDNTLTDIVSGRFDAGIRLGEQVAKDMVAVRIAADMRLIPIASPAYFEQYGTPTTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           QEL  H  I     +P     + W    D R I       L  NS    +    LG GIA
Sbjct: 185 QELQNHRCINM--RLPTMGGLYAWEFEKDGREIKVRVDGQLTFNSLRQRIDAARLGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P   V D   +  LV+++ D   P F  Y+ Y
Sbjct: 243 FVPQDSVTDELADGRLVQVL-DEWCPRFPGYYLY 275


>gi|91779417|ref|YP_554625.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692077|gb|ABE35275.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 324

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 141/300 (47%), Gaps = 28/300 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F   A  GS T AA++L +  S+ SR ++ LE ++ I LF R  RGL+LTE G   +
Sbjct: 25  VRTFVRAAELGSLTRAAQELSIKTSTASRHLNELEADLRIALFNRSTRGLSLTEGGKVFY 84

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              SEV  +L+  +      +  PSG LR+   +  G+  +  ++ EF+  Y DI ++ I
Sbjct: 85  ARVSEVLTQLKDARDATSSLNQSPSGVLRVTLPVSFGRKHVVPHIGEFMDRYRDIDVEAI 144

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +++     D  IR+   +Q SSL+ R+L      A AAP Y + C  P++   L 
Sbjct: 145 FTDDVLNLIESQIDLGIRI-GALQDSSLMARRLAPHREVACAAPAYARACGVPVTPGALK 203

Query: 188 KHNLITFGDLI-------PKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            H  + F   +       P+      W  ATV+          L ++   +++   + G 
Sbjct: 204 DHACLMFSRTVGNVWYVRPREDTAAEWQKATVN--------GRLTLDDTDALLAVALAGR 255

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSF---------TVYFCYPEALKNTGKLKAFRNFI 290
           GIALLP ++  +  +  R+    I P +         +++  YP     + K+++F +F+
Sbjct: 256 GIALLPGWLAHEPLSDGRLTS--ILPGWEIRSSREEASIWAVYPRKKTVSSKVRSFIDFL 313


>gi|332530214|ref|ZP_08406161.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040335|gb|EGI76714.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 309

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 16/255 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V R GSF  AA QL +  +++SR++  LET++G +L  R  R L+LT  
Sbjct: 2   LDLNDVAVFVQVVRYGSFAEAARQLGIPPNTLSRRVQQLETQLGTRLMQRSTRKLSLTTA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + H   ++    L      L   +  PSG +R+A   D         L  FL  +P +
Sbjct: 62  GQEFHDRCAQAVEGLVDAGQSLLSRNETPSGLVRVAAPADFFDFFPMEWLASFLAEHPRV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPL 181
           ++  +L +   D+  D  D AIR    ++ S L  R+++   +    A+P Y+     P 
Sbjct: 122 RLDFVLSDARADLIADRIDVAIR-GGVLEDSGLFARRVLDAGLDGLVASPAYIAARGMPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYC 235
           S+Q+L  H+ + F     +      W   +  P G  + + +QV   LS      + +  
Sbjct: 181 SLQDLADHDCLVFAHPAGQA----TW--GLSGPDG--KDATVQVAGRLSGNTVQVLRKAA 232

Query: 236 VLGSGIALLPDYIVK 250
           + G GIALLP  + +
Sbjct: 233 LAGMGIALLPSTMTR 247


>gi|328469288|gb|EGF40234.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 299

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 8/283 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  +L+ S +S++++ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVIELGSFSKVAEANNLTNSVVSKRMARLEEEIGAQLLYRTTRKLTLTEAGKV 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+  D  D  IR    ++ SSLI R ++       A+P Y+    +P+   +
Sbjct: 124 MSLDNRFVDLVADGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPIEPID 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   W    D      R+S     ++  ++ +  + G GIA +
Sbjct: 183 LTSHNCLQYAYQTTGASE---WEFKSDEGNYIVRVSGSFSTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           P  +V     N  LV I  +++     +Y  YP   +   K+K
Sbjct: 240 PRCLVYHDIRNGQLVDIFPELVGKKLGIYAVYPFTRQPPNKVK 282


>gi|315126504|ref|YP_004068507.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315015018|gb|ADT68356.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 317

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 123/267 (46%), Gaps = 15/267 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  V   GSFT AA+ L LS + ISR ++ LE  +  +L  R  R + LT++G 
Sbjct: 31  WEGIDEFIAVGEEGSFTQAAQTLGLSVAHISRHVTKLEQRLNTQLLTRTTRKVVLTKEGE 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       + H ++     L      P GK+++   +  G++ +   +  F+  +P++++
Sbjct: 91  QFLHQVKHLQHAMDEATQGLASVQTSPKGKIKLTAPVMYGESFIMPIVHSFMHDHPEVEV 150

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+  ++     D AIRL   ++ SSL  R+L +      A+P YL    EP ++ 
Sbjct: 151 IATLSNEQENLLEGGFDLAIRLGH-LKDSSLKARRLSSRRFIMCASPAYLARFGEPHTLG 209

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL+ H  +       +  E+       D+ I    R+ C   NS  +++   + G GI  
Sbjct: 210 ELNNHQCLIGNSSYWRVNEN-----NRDKHIKVAGRLHC---NSGWALVDGAIKGLGIVQ 261

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVY 270
           LPDY +++      I    + P  T Y
Sbjct: 262 LPDYYIEN-----EIKSGQLVPILTAY 283


>gi|239815885|ref|YP_002944795.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802462|gb|ACS19529.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 320

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 16/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  SG F+ AA  L ++ S++S+ ++ LE  +GI+L YR  R L LT +G   
Sbjct: 11  EMEAFVQVVESGGFSAAARLLDMTPSAVSKLVARLELRLGIQLVYRSTRKLQLTPEGLHF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  ++ V   ++  +     +   P G++ I  ++  G + L   +   L L+P I + +
Sbjct: 71  YERSTRVLADMDEAE-RCAAAGAAPRGRVSINASVSFGHHKLVPLVPRLLELHPQITLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  + AD AIR  + +  S L+ R+L        A+P YL     P + QEL
Sbjct: 130 ALTDRIVDLMDERADIAIRWGQ-LPPSDLVARRLGETSQSIVASPGYLAKYGTPRTPQEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + HN + +           +W   VD R I  P    ++     ++ Q  + G+G+A L 
Sbjct: 189 EAHNRLGWS----YRRNTPDWPLRVDGRMIAVPVAGPVRAGDGETLRQLAIAGAGVARLS 244

Query: 246 DYIVK---DNPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y V+   D   LV ++E+     + P   VY      L    +++A  +F+
Sbjct: 245 LYHVQHDIDAGRLVPLLEEFNPGEVEPIHAVYIGKAGTLP--ARVRAVLDFL 294


>gi|126739085|ref|ZP_01754779.1| probable transcription regulator protein [Roseobacter sp.
           SK209-2-6]
 gi|126719702|gb|EBA16410.1| probable transcription regulator protein [Roseobacter sp.
           SK209-2-6]
          Length = 299

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 8/258 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +   V   G+F+ AA  L  + S++ +++  LE  + + L  R  R +TLT  G + 
Sbjct: 6   ELEILLAVVDHGNFSAAARALGYTPSAVGKRVHQLEQRLKVPLLVRSTRRMTLTGAGRRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E++ +L   + ++ + +    G +R+ ++  LG+  +   + EF+  +PDI+I+L
Sbjct: 66  VEEARELFVRLTALEDDITDDADTLRGTIRLTSSAALGRLHVVPLVIEFMERHPDIEIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL +K ID+  D  D AIR    +  SSL+ R+L++     +AAP YL+    P   ++L
Sbjct: 126 ILTDKIIDLISDGFDLAIR-SGILPDSSLVSRRLMSNRRRPFAAPAYLEQHGVPEKPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +  G         FN     +  +G P   C   NS  ++   C    GIA LP+
Sbjct: 185 VTHKCLRLGQERQVSDWGFNGRQGGNVRLG-PGFLC---NSLEALHAACCAERGIAWLPE 240

Query: 247 YIVKDN---PNLVRIMED 261
           ++V +      LV ++ED
Sbjct: 241 FLVSNGVHEGRLVPLLED 258


>gi|325521474|gb|EGD00293.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 201

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 102/182 (56%), Gaps = 1/182 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF +VAR  SF+ AA+ L +S S +S+++  LET +GI+L +R  R +++T+ G +++
Sbjct: 13  LRVFCMVARKASFSAAADALAMSSSYVSKRVGMLETSLGIRLLHRSTRRVSVTDAGERVY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E    ++  +   P G LR++++   G+N++   L E    +P + ++L 
Sbjct: 73  AWAEKILDDVEHLVEDVSSTRRVPRGTLRVSSSFGFGRNVVAPALAELSDRHPQLNVRLE 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D++ +  D  IR+   I +  LI ++L T H    A+P YL     P  + +L 
Sbjct: 133 LFDRIVDVAAEGFDVDIRIGDEI-AGHLIAKRLATNHRVLCASPDYLARHGMPKQVGDLA 191

Query: 188 KH 189
            H
Sbjct: 192 SH 193


>gi|326318738|ref|YP_004236410.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375574|gb|ADX47843.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 330

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 146/302 (48%), Gaps = 26/302 (8%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  VAR  +F  AAE+L L+QS++SRQI  LE EVG+ LF RH R + LT  G++L R
Sbjct: 21  RAFLAVARHLNFRAAAEELSLTQSAVSRQIQALEDEVGVPLFLRHTRAVELTSAGAQLQR 80

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +    +L+ +   +++++ + S  + I T        L   ++EF    PDI I+  +
Sbjct: 81  AVAPALERLDASVRLVRQTAGRKS--VAITTWASFASMWLIPRMEEFQRDNPDIDIR--I 136

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLI-QRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184
           D  D+ + ++ AD  + LR  +  S L   ++L    +   A+P  LK+    R+P  + 
Sbjct: 137 DASDVSVDLETADVDLALRYAVPGSQLQGAQRLFGEQLAVVASPWLLKSGPPIRKPADVA 196

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLG 238
           +     LI  GD          WL T  R   +   S LQ   +L       I+Q  + G
Sbjct: 197 QF---TLIEAGDAHRTAY--LEWL-TWRRWFEQNGQSKLQPKRWLYFNYAHQIVQAALTG 250

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY--PEALKNTGKLKAFRNFIFLK 293
            G+AL    ++ D   + +LV ++      S  VY+    P + +   ++KAF +++  +
Sbjct: 251 QGLALARMPLIADSLASGDLVEVLPGYRLDSPLVYWMLVGPRSGQRP-EIKAFCSWLLRE 309

Query: 294 AR 295
           A+
Sbjct: 310 AQ 311


>gi|260598476|ref|YP_003211047.1| hypothetical protein CTU_26840 [Cronobacter turicensis z3032]
 gi|260217653|emb|CBA31971.1| hypothetical protein CTU_26840 [Cronobacter turicensis z3032]
          Length = 391

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 115/245 (46%), Gaps = 5/245 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  +   GS T AA  L  + S +SR ++ LET +G++L  R  R L+LT+ G   +
Sbjct: 102 VEIFVTIIEKGSITAAAVALGTTASVLSRALTRLETRLGVQLVRRTTRQLSLTQAGRHYY 161

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +   E  + ++Q    +  G +R++         L   L  F   YP I ++L 
Sbjct: 162 EQACSAFSVFERAERDIQGRGAETVGHVRLSAPTTYAHYRLPALLTRFAAQYPGITVELN 221

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+++D+  +  D AIRL   +  S L+ RKL    +   AAP YL+   EP    +L+
Sbjct: 222 IANRNVDLVAEGYDLAIRL-GTLPDSRLVARKLEEAPLCLVAAPSYLRQHGEPQQRADLE 280

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLP 245
            H  + F  ++P       W L   ++P+       +QV +  L ++   V G+GI    
Sbjct: 281 NHRCLPF--IMPSSGRVAQWSLCEEEKPVEWTPKGQIQVSDDILGVISLAVSGAGICQTY 338

Query: 246 DYIVK 250
           D+I +
Sbjct: 339 DFIAR 343


>gi|167033316|ref|YP_001668547.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859804|gb|ABY98211.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 306

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 136/289 (47%), Gaps = 8/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +   GSF  A  QL    + +S+++S LET +GI+L  R  R L  T++G +
Sbjct: 10  DELATLLALHEQGSFAAAGRQLERHPTVLSKRLSSLETRLGIRLVERSTRQLRFTDEGQR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E    +   + E  E +    G+LR+A    +G+  L G L +F+L YP + ++
Sbjct: 70  LVAKVREASRLIAEAEQEAAEGAATVRGRLRLALPAAMGRRWLSGMLADFVLAYPQVTVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++ +D+  +  D AIR+ + +  + L+  KL        A+P YL     P   ++
Sbjct: 130 AEYADRFVDLIGEGFDAAIRIGE-LADNRLVASKLCDHVRILCASPQYLARHGVPAEPEQ 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN + F  L  +   ++  L +    +       L+ N   ++++    G GI    
Sbjct: 189 LPEHNCLGFSGL--RSFPEWR-LKSGAHQVNVKVTGSLRSNDNEALLEAARRGVGILAGG 245

Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D+++ ++    NLVR++    +  +  +Y   P A  NT  L AF+ ++
Sbjct: 246 DWLMGEDLASGNLVRVLPQWQLDVAAGIYLVRPTARLNTAALGAFKAWL 294


>gi|188494226|ref|ZP_03001496.1| transcriptional regulator, LysR family [Escherichia coli 53638]
 gi|188489425|gb|EDU64528.1| transcriptional regulator, LysR family [Escherichia coli 53638]
          Length = 299

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL  +P I+++L 
Sbjct: 67  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIRT-GALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|134295520|ref|YP_001119255.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134138677|gb|ABO54420.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 313

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD+ ++L
Sbjct: 66  LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIGRYRQRYPDVHVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+    +P +  +L
Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRELPDSGLVSQRLGDSYSVICASPDYVGAHGKPQTPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
            +H  +  G + P    D  W  T+  P G+  +       +VN   ++      G GI 
Sbjct: 186 AQHACL--GMVAPGFHFD-EW--TLAGPRGDELVPVTAPPFRVNVAEALAVAVREGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP Y       +  +VR++ +  +   ++Y  YP       K++ + +F+
Sbjct: 241 GLPLYSAIGGLRSGQIVRLLPEYRSQPMSIYALYPSRQYLDAKIRTWVDFL 291


>gi|157376347|ref|YP_001474947.1| putative transcriptional regulator protein [Shewanella sediminis
           HAW-EB3]
 gi|157318721|gb|ABV37819.1| putative transcriptional regulator protein [Shewanella sediminis
           HAW-EB3]
          Length = 296

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 132/275 (48%), Gaps = 13/275 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F +V + GSFT AA  L L ++++SR+I  LE  +  +LF+R  R L LT+ G  
Sbjct: 4   EDLKLFTIVVKLGSFTAAATALDLPRANVSRRIGELEKSLNAQLFFRTTRQLRLTQHGEA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V    E  + +L +   KP GK+++    +     LQ  L  F   YPDI++ 
Sbjct: 64  YYHELLTVLEGFEQAKNKLHDIDDKPVGKVKVGFLPE-SDEALQPILARFQEQYPDIELD 122

Query: 126 LILDNKDI-DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L   N  + DI     D AI   + I  S  I R+L+++    YA+P Y++    P ++ 
Sbjct: 123 LRFTNNYVTDIYSQGLDFAIHGGR-ILDSGFIARRLLSLGRCMYASPEYIEKNGMPKTLD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIAL 243
           EL +H  I +    P    D  W    D      ++S    ++++  ++  ++G  GI  
Sbjct: 182 ELREHQCICY--RWPDGTLDDCW----DLLTETIKVSGRFSSNHMGFVRRAIIGGQGIGF 235

Query: 244 LPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPE 275
           LP    +   ++  LVRI+    + +  V+  YP+
Sbjct: 236 LPPLFAFNAIESEGLVRILPQYQSKTEDVWLIYPD 270


>gi|255292733|dbj|BAH89839.1| LysR family transcriptional regulator [uncultured bacterium]
          Length = 308

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 12/302 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   +++RVF  VA    F  AA +L ++++  +R +S LE E+G +L  R  R ++ T
Sbjct: 1   MTGRIERIRVFVKVAELNGFAAAARELGVTRTIATRYVSELEDELGAQLLVRTTRKVSTT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G         +   L+     + +     SG+L ++  +  GQ  L   L  F   YP
Sbjct: 61  VAGRLYLERMQTLLADLDRADELINQQHATLSGELCLSAPVSFGQRFLPRVLAGFRESYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ +++ L ++ IDI  +  D A+R+  P +  S I RK++ I      +P YL+     
Sbjct: 121 EVLLKIHLTDRFIDIIEEGFDMALRISGPPEDVSTIWRKIMPIRRSIVVSPGYLRTAPPL 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYCV 236
              ++L  H ++ +    P      +W  T  R  GE R + +    + NS   I+   +
Sbjct: 181 EQPEDLSGHAILGYSHF-PGGQ---SWKLTHCR-TGEVRSATVRHGFESNSGELIVASAL 235

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              G+++LPD++V+D      L RI+ D   P       YP       K++AF  FI  +
Sbjct: 236 GNGGVSMLPDFLVRDELAAGTLRRILTDWTPPEIWPTAFYPPYEMLPAKVEAFTGFIEEQ 295

Query: 294 AR 295
            R
Sbjct: 296 VR 297


>gi|255597253|ref|XP_002536731.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
 gi|223518733|gb|EEF25651.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
          Length = 279

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 1/185 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A  GS+T AA  L +S S++S+ I  LE   G++LF R  R LTLT +G  L   
Sbjct: 14  AFARAASLGSYTAAARSLAVSPSAVSKSIQRLEQHFGLRLFSRTTRSLTLTPEGRDLLER 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           T  +  + E  +  +  +  +PSG L++   + +G ++L   L  F   YP + I + L 
Sbjct: 74  TQRLLREAENIEQGVAAARAEPSGMLKVTAPLPVGVHVLAPALPTFRRRYPKLTIDVRLS 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIR+  P   + LI R+L    + A+A+P YL    +P    +L  H
Sbjct: 134 DRYVDLIEEGVDAAIRVGNP-GDTRLIARQLAPHRICAFASPAYLAARGKPQHPSDLLNH 192

Query: 190 NLITF 194
           + + F
Sbjct: 193 DCVNF 197


>gi|332142658|ref|YP_004428396.1| transcriptional regulatory protein [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552680|gb|AEA99398.1| transcriptional regulatory protein [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 289

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 138/284 (48%), Gaps = 9/284 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +AR+G    AA+ + +  +++ R++  LE  +  KLF    +G  LT  G++L 
Sbjct: 1   MRLFLGLARNGRVAIAAKGMKVDPTTLIRRVKKLEDSLNCKLFELTKKGYVLTTHGTELV 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +  H     Q EL +     +G +R++ +   G   L   L +F   YP I I+L+
Sbjct: 61  TYIEKAEHYFLEAQNELGDERSHLAGTIRVSVSEGFGSWFLAPLLPDFKKRYPGISIELV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  ++++   AD AI L KP     L+ +KL   +++ Y     +K  R+P ++Q+L 
Sbjct: 121 ATSGFLNLNKREADMAILLEKP-SRGLLVTQKLTDYNLYLYTHRSLIKE-RKPETLQDLT 178

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +NL+++  DL+      F     +       ++S L+  S  +  Q  + G+G+ +LP 
Sbjct: 179 SYNLVSYVPDLVYAPQLKFIEETALS------QLSALRSTSINAQYQMLINGAGVGILPK 232

Query: 247 YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ +  P LVR++E+ I    T +    +   +  + + F  ++
Sbjct: 233 FMAETQPGLVRLIENDIHIKRTFWLATHKETHSQARFQVFTQWL 276


>gi|109897681|ref|YP_660936.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109699962|gb|ABG39882.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 301

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 136/293 (46%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  +AR+ + + A ++  LS +  S  IS LE  +G++L +R  R ++LTE+G  
Sbjct: 4   EHLKLFVRIARTCNISAAGQEQDLSPAVASAYISKLEDNLGVRLVHRTTRKVSLTEEGEA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+   +ET +  + +    P G LR+      G+  +   L EFL  YPD+ + 
Sbjct: 64  FLPHAEEILTNIETARASVGDGEHNPKGVLRVTAPASFGRMHIVPALDEFLARYPDLSVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              ++  +D+     D AIR    ++ S+L  RKL        A+P Y+K+   P   Q+
Sbjct: 124 FRFNDSIVDLVEGGFDIAIR-DAALKDSNLFARKLAPDRRIICASPKYIKSHGAPKIPQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           +D H  +    L         W    D+  G   I     +++++  ++    + GSG+ 
Sbjct: 183 IDAHQCVNLMGLD-------TWDFETDK--GSVSIKATGRIRIDNGEAVRDAAIEGSGLV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIF 291
           +   + V     +  LV+++ED    S T ++  YP   +   K++AF +F  
Sbjct: 234 MSSIWCVYQALQSGQLVQVLEDYPMVSKTAIWAVYPSNRQLAPKVRAFIDFFL 286


>gi|296388289|ref|ZP_06877764.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313108540|ref|ZP_07794541.1| putative LysR-family transcriptional regulator [Pseudomonas
           aeruginosa 39016]
 gi|310881043|gb|EFQ39637.1| putative LysR-family transcriptional regulator [Pseudomonas
           aeruginosa 39016]
          Length = 317

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 135/292 (46%), Gaps = 15/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSFT AA+ L L ++ +S+++S LE  +G++L  R  R L+LT  GS   
Sbjct: 7   MATFVKVVDAGSFTRAADALGLPKARVSQRVSDLEKHLGVRLLNRTTRALSLTHDGSAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +  L+  +  P G+LR+ + I + + ++   L +F   YP IQ++L 
Sbjct: 67  DKCQVLLQQIDELEATLRGGTATPIGRLRVDSLITIARWVIAPRLHDFQARYPRIQLRLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  ++  D  DC IR    ++ SS+I R L  I M  YA+P YL +     S  +L 
Sbjct: 127 SSDRISNLLEDGIDCTIR-GGALKDSSMIARHLCDIQMGLYASPEYLASIGGVDSPDDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSGIA 242
           +   +++     +    F W    +   G  R        +Q +     +  CV GSGI 
Sbjct: 186 QFRRLSW--FSGRERNPFMW----ELESGSERFVVQSGDGMQFDEPDVAISACVAGSGIC 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
               + V        LV ++      +  V+  YP +   + +++ F N++ 
Sbjct: 240 PGAPFAVAGFVRAGKLVPVLPQWHFSAAPVHVIYPGSRHLSVRVRCFVNWVM 291


>gi|269961920|ref|ZP_06176276.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269968075|ref|ZP_06182112.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827321|gb|EEZ81618.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269833368|gb|EEZ87471.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 294

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 135/296 (45%), Gaps = 25/296 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  VA S  F+ AA+QL  S S +SRQ++ LE  +G+ L  R  R ++LTE G 
Sbjct: 4   FEGINEFVTVAESLGFSAAAKQLGCSTSHVSRQVTRLEERLGVALLARSTRMVSLTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   E+   L+    +L     + SG LR++      +N +   L  F   +P++ +
Sbjct: 64  AYYQQCKELVIGLQQANEQLTTQQTQLSGTLRVSAAGAFSENHVAPALMAFAKQHPNLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +   ++   D  D AIR  + +  S L+ RKLV   M A A+  YL     P   +
Sbjct: 124 EINFNTSMVNFIEDGFDFAIRYGR-LSDSGLVARKLVDRPMAAAASQRYLDEHGLPTHPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +L +H+ I     +        WL   D +P+   ++    + N+  +++Q C  G G+A
Sbjct: 183 QLKRHSCIIANKDV--------WLFEKDGKPLDGVKVQGRWKSNNAHTVLQACAEGLGVA 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP     D   +  LV I+E       + +  Y             R+F+ L+AR
Sbjct: 235 YLPKSSFNDAISSGRLVPILEPYWGSGNSSWIVYQN-----------RHFLPLRAR 279


>gi|217977800|ref|YP_002361947.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
 gi|217503176|gb|ACK50585.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 298

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 121/282 (42%), Gaps = 8/282 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW   R F  V R GS + AA  L L+Q ++ RQI+ LE  +G  LF R  RGL  T+  
Sbjct: 5   DWSHYRAFVAVLREGSLSGAARALGLAQPTLGRQIAELERSLGAALFIRSPRGLVPTDAA 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +      +              +   SG +R+  +  +G  +L   L  F   +P   
Sbjct: 65  RDIAPHAEAMAAAAGAMMRLASGGTDGASGVVRVTASDIIGAEVLPALLGAFRRAHPAAT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L N+  D+    AD A+R+ +P Q  +L+ R +  + +  YA   YL+      S+
Sbjct: 125 IELALSNRVEDLLRGDADIAVRMVRPSQ-QALVTRHIGAVSLGLYAHRRYLEGAPPLRSL 183

Query: 184 QELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             L + H LI F    P   E    L     P+       L+ +S L+ +     G GI 
Sbjct: 184 ATLARDHALIGFDRETPFLREMLTRL-----PLTRDDF-ALRADSDLAQLAAIRAGFGIG 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            +   I + +P L+ I    I  +  ++    E L+ + +L+
Sbjct: 238 FIQHGIARRDPELIPIFPGEIGFTLEMWLALHEDLRASRRLR 279


>gi|170694500|ref|ZP_02885653.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140634|gb|EDT08809.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 317

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 131/293 (44%), Gaps = 35/293 (11%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR GSF  AA      ++++SR++S LE  +G++LF R +RG+ LT++G  L+  T
Sbjct: 27  FNLVARHGSFGEAARVAERPKATLSRRVSELEDSLGLRLFERGSRGVKLTQEGRALYERT 86

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  +   +   S  P G+LRI+      Q  +   +  F L YPDI++++  ++
Sbjct: 87  GALLAELADSAAAITSGSEHPRGRLRISAPALFSQIAMGKLVATFALKYPDIRLEVTTED 146

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  IR+  P    SLI R  +   +   A P   +               
Sbjct: 147 RPVDMVEEGYDLVIRV-NPDVDESLIGRVFLRDRLVVVATPGLARP-------------- 191

Query: 191 LITFGDLIPKCMEDFNWLATVDR--------PIGEPRISCLQV---NSYLSIMQYCVLGS 239
             T G  +P  +       T DR        P G+ RIS   V   +S + +     LG 
Sbjct: 192 --TDGSSVPAVVR-----GTPDRIAAWDVTGPKGKSRISITPVAHLSSLVMVRDTVRLGV 244

Query: 240 GIALLPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G A LP  +V  +    R+    DV  P   ++  YP     + ++ AF + I
Sbjct: 245 GAARLPLSLVSHDIAAGRLAHWGDVDGPDIPLWALYPSRRLLSPRVSAFLDHI 297


>gi|167644959|ref|YP_001682622.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347389|gb|ABZ70124.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 292

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +    SF+ AA  L+L  S+ +  +  LE  +G++L  R  R ++ T  G   +
Sbjct: 1   MRLFVRIVERRSFSRAALDLNLPASTATEGVKQLEARLGVRLLQRTTRHVSPTLDGEAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +  +LE  + E   S  KP G LR+     L ++ L   L  FL  YPDI++ L 
Sbjct: 61  RRCLTILGELEDAEAEF--SDAKPRGLLRVDVHGALARHFLLPGLPAFLERYPDIRLHLG 118

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   ++ S++I R++  +     AAP YLK    P +   L 
Sbjct: 119 EGDRLVDLVREGVDCVLRVGD-LKDSAMIARRVGMLDEVTCAAPSYLKRRGVPATPDTLA 177

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
               +  G +     E F    T+D   R +  P +  + V +  +I   C LG GI  +
Sbjct: 178 ADGHVMIGFVSSATGEPFPLEFTIDGTLRRVTLPTVLTV-VGAETNIAAAC-LGLGIIQV 235

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y  +   D   LV I+ D       V   YP+A     +L+ F  ++
Sbjct: 236 PRYHAQAALDAGRLVEILPDHPPSPTPVSLLYPQARHIPPRLRVFMEWL 284


>gi|83718146|ref|YP_440220.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167616915|ref|ZP_02385546.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257140846|ref|ZP_05589108.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651971|gb|ABC36035.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 321

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 145/312 (46%), Gaps = 26/312 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  +P+
Sbjct: 65  AGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTLSQTMLSRLLPEFLRRFPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++Q+ + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L+    P
Sbjct: 125 VRVQIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLQQNAPP 184

Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231
           L   +L + + +    GD        FN +A    P G       EPR   L     ++I
Sbjct: 185 LVPDDLSRFDTLDTPSGD----GRHVFNLIA----PDGTRHAHEHEPR---LVTADLMTI 233

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +  + G GIA LP+ +  +      L  +M     P   +Y  +         ++AF +
Sbjct: 234 REAVLDGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVD 293

Query: 289 FIF--LKARDWK 298
           ++   L + D+K
Sbjct: 294 YLVEKLDSADYK 305


>gi|325121643|gb|ADY81166.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 311

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 125/265 (47%), Gaps = 16/265 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F   A  GSF+ AA  L L+ +++SR ++ LE  +G++LF+R  R LTLTE G  
Sbjct: 5   SNLESFIRSAEHGSFSAAARHLALTPAAVSRNVAQLEQNLGVRLFHRSTRNLTLTEAGEH 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +  + ++++  E    S  P G L+I+ +   G   +   + EF+  YP+I+++
Sbjct: 65  FFNNIRDNLNSIQSSISEFNTGSSSPKGILKISLSPGFGVEYILPLMPEFINRYPEIKLE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L NK +++  D  D AI     +    +++R L  +HM   A+P +LKN   P   Q+
Sbjct: 125 WHLSNKQVNLITDNFDVAIGSGVKL-GLGIVKRPLSPLHMIIAASPAFLKNKVLPRHPQD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGS 239
           +   + I         + ++ +L     P  E   + L +N  L      ++ Q   LG 
Sbjct: 184 ISGWDGIIMRSPQTGKLHEYKFLG----PNSEQ--AYLNLNEKLVADDPSALHQGAALGM 237

Query: 240 GIALLPDYIVKD---NPNLVRIMED 261
           GIA +     K    N  L+RI+ D
Sbjct: 238 GIAAISTAHAKSYIANGTLIRILPD 262


>gi|293604354|ref|ZP_06686761.1| glycine cleavage system transcriptional regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292817231|gb|EFF76305.1| glycine cleavage system transcriptional regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 308

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 135/297 (45%), Gaps = 23/297 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKL 66
           L+ F V AR  SFT AA++L ++Q ++S+Q+  LE  VG++LF R  +GL LTE G S L
Sbjct: 11  LQAFEVAARHSSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLRIRQGLVLTEAGRSYL 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +V + +  ++E   +EL     +  G L +      G   L   L  F+ L PDI ++ 
Sbjct: 71  TKVQAGL-GQIEAATVELIAHQGQ-GGTLNLTCMPTFGARWLIPRLTAFMRLRPDIHVEF 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLK-NCREPL 181
           +   +  D S    D A+R  + I   S    ++ R++V +      +P  +   C  P 
Sbjct: 129 LPHRQGYDFSTPELDAAVRFGEGIWPGSGADYIVGREIVPV-----CSPRLIPGGCPSP- 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L  + L+     +    + F       R      +   + + Y  + Q    G G+
Sbjct: 183 --EALLAYPLLHHTSALEGWRDWFEQAGCDSR----RSLEGARFDQYALLSQAAAAGFGV 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           AL+P  +++D   +  L   M+  I      Y CYPE   N   L+AFR ++   +R
Sbjct: 237 ALIPRCLIEDELRDGKLAVAMQLPIRARMGYYLCYPEQKANLPTLQAFRAWLMEVSR 293


>gi|293413523|ref|ZP_06656172.1| LysR-like transcriptional regulator [Escherichia coli B185]
 gi|291433581|gb|EFF06554.1| LysR-like transcriptional regulator [Escherichia coli B185]
          Length = 294

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 132/282 (46%), Gaps = 21/282 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V + GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVQEGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDI+
Sbjct: 66  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYC 235
            +L  H  I   F D        + W    D      RP G+  +S    +SY+   +  
Sbjct: 186 ADLKAHPCIAYQFAD-----GSVYQWELNQDDKKISHRPEGQWALS----DSYME-AEAA 235

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            LG G+A +P  +V D+     L+R+++        ++  YP
Sbjct: 236 RLGLGLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 277


>gi|114766362|ref|ZP_01445344.1| Transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114541395|gb|EAU44442.1| Transcriptional regulator, LysR family protein [Roseovarius sp.
           HTCC2601]
          Length = 298

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 133/288 (46%), Gaps = 11/288 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +WD LR+F  VAR  S + A   L +  +++ R+I  LE  +G  LF +  +G  LT
Sbjct: 1   MRGNWDDLRIFLAVARGDSLSGAGRVLRMDPATVGRRIGRLEETLGQPLFAKSPQGYALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L     E    L      ++ +    SG++RI         LL     E     P
Sbjct: 61  EAGARLLSHAEEAEQALGQGAEAVRGAGEGMSGQIRIGAPDGCANFLLPQVCAEIGAQNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++IQ++   + +++S   AD AI +  P  +  L+ +KL    +H  A+  YL      
Sbjct: 121 DLEIQIVALPRIVNLSRREADIAIGVSAPT-AGRLVVQKLADYKLHLAASETYLAEHPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S  +L +H ++ +   IP  +  ++ ++LA     +G  R+  L  NS      +    
Sbjct: 180 RSRADLREHRVVGY---IPDMIFDKELDYLAD----LGVDRVR-LASNSVSVQFHWLRQH 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +G+ ++ D+ +   P L +++ + +  + + Y    E  +  G+L AF
Sbjct: 232 AGLGIVHDFALPAAPGLRKVLAEEVEITRSFYLVRHEDDRRLGRLNAF 279


>gi|310765468|gb|ADP10418.1| Transcriptional regulator, LysR family [Erwinia sp. Ejp617]
          Length = 302

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 124/255 (48%), Gaps = 7/255 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  + S+T AA+ L L++SS+S++IS LE  +G KL  R  R + +TE G   +  
Sbjct: 12  IFAKVVETLSYTEAAKALGLAKSSVSKEISALEVRLGAKLLQRTTRRIQVTEVGMTYYHY 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              + H++++  + +++   +PSG LR+   +  G   +   L  F+     + + L L 
Sbjct: 72  CYRILHEVKSADLFIRQFHEEPSGSLRVVAPVTFGCQCIVPVLNRFIASNIHVSVDLDLT 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ ++   D+ D AI + + +       R L+ I    YAAP YL N     S  +L +H
Sbjct: 132 DRPVNFEDDHIDLAIAITRDLPEHR-NYRPLMDIAWGLYAAPDYLINRTAVTSPDDLARH 190

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I F    P       +     +   E R S  + N+ ++++   V  +GIA LP YI 
Sbjct: 191 ECILFRG--PAHTISLPFRKEKQKKDIEVR-SRFRANNSIALLNSAVAKTGIAYLPSYIA 247

Query: 250 K---DNPNLVRIMED 261
           +   DN  LV+++ D
Sbjct: 248 REAVDNGKLVQLLPD 262


>gi|167839327|ref|ZP_02466011.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 336

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 66  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286


>gi|149187248|ref|ZP_01865546.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148838784|gb|EDL55723.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 300

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 15/290 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  +A + + + A ++L LS +  S  IS LE+ +G++L +R  R ++LTE+G  
Sbjct: 4   EHLKLFVRLAATHNISQAGQELGLSPAVASSYISKLESALGVRLVHRTTRKVSLTEEGVA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   +E  +  +   +  PSG LR++     G+  L   ++ F+  +P ++I 
Sbjct: 64  FLPHAEEVLESIEIARASVGAGNRLPSGVLRVSAPASFGRMHLIPAMQAFMDAHPGLKID 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L +  ID+     D AIR    ++ S+L+ RKL +      A+P YL    +P    +
Sbjct: 124 CRLSDSIIDLVEGGFDVAIR-NAALKDSTLVARKLTSDTRIVCASPSYLIKHGKPTHPTD 182

Query: 186 LDKHNLITFGDLIPKCMEDF-NW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +HN +        C+  F NW   T D P+        + ++  ++   C  G GI +
Sbjct: 183 LLEHNFV--------CLTGFENWTFETPDGPVSVKPKGEFKADNGEAVRDACAHGLGITV 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289
              +      +   L+ I+ED    S T ++  YP +     K++AF +F
Sbjct: 235 SSAWCCYEYLERGELIPILEDYPLISETAIWAVYPSSRLLAPKVRAFIDF 284


>gi|294789434|ref|ZP_06754671.1| transcriptional regulator, LysR family [Simonsiella muelleri ATCC
           29453]
 gi|294482647|gb|EFG30337.1| transcriptional regulator, LysR family [Simonsiella muelleri ATCC
           29453]
          Length = 293

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 15/296 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V +SGSFT AAE L +S    S+ ++ LE  +  +L YR+ R L LTEQG   +
Sbjct: 7   MKVFCQVVQSGSFTRAAELLGISIPMASKHVAHLEKTIQSQLLYRNNRHLKLTEQGEIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R        L   +  +   +VKPSG LR++  +    ++    + E+   YPD+++ L 
Sbjct: 67  RECVMALDILRQAENVVSAGTVKPSGILRVSLPLWFSCDIFANLIAEYRQQYPDVELILS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D++ D  D A+RL   +   ++I + L  I  +  A+P Y+     P   ++L 
Sbjct: 127 LTNRRVDLNTDGEDLALRLSHQL-PDNVIAKFLTRIPFYLVASPDYVARYGLPEHHEDLL 185

Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           KH  I  ++ DL  + +  +       + +  P    L+ N+   I      G G+  +P
Sbjct: 186 KHEAILPSYTDL-SQLVAQYQ-----QQTVPLPMKGTLRSNNTQMIAALIRSGVGLGYMP 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            ++         L+ I+ D       +Y  Y        + ++F +F    A  WK
Sbjct: 240 AWLADVDLQAGRLIHILPDYQIEGVPLYVVYANRAFMNARTRSFIDFF---AEKWK 292


>gi|167578829|ref|ZP_02371703.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 328

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 139/298 (46%), Gaps = 27/298 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE G  
Sbjct: 16  NDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTEAGQL 75

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  +P++++Q
Sbjct: 76  FYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTLSQTMLSRLLPEFLRRFPEVRVQ 135

Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L+    PL   
Sbjct: 136 IRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLQQNAPPLVPD 195

Query: 185 ELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235
           +L + + +    GD        FN +A    P G       EPR   L     ++I +  
Sbjct: 196 DLSRFDTLDTPSGD----GRHVFNLIA----PDGTRHAHEHEPR---LVTADLMTIREAV 244

Query: 236 VLGSGIALLPDYIVKDNPNLVRIME-DVITPSFT--VYFCYPEALKNTGKLKAFRNFI 290
           + G GIA LP+ +     N +R  +   + P +T  V   Y   +   G   A R F+
Sbjct: 245 LDGVGIAALPESMYG---NALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFV 299


>gi|167562725|ref|ZP_02355641.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 306

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G + H
Sbjct: 11  LHVFISVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYH 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
             T++ Y ++   +  L ++  +P G LRI + + L ++++  + L EF   YP + +++
Sbjct: 71  DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     P  + +L
Sbjct: 130 RYEDHLVDIVKERFDAGIRLADRLQPGMVGVKIAPALACALVATPGYLAQHGTPAKVADL 189

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            +H  I F    PK      W
Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208


>gi|90411757|ref|ZP_01219766.1| Hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90327319|gb|EAS43683.1| Hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 288

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 134/290 (46%), Gaps = 15/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V + GSF+ A     ++ + I + I  LE  +G KL  R  R  +LTE G   +
Sbjct: 1   MQAFVSVVQHGSFSGATADCSVTPTMIGKHIKFLEVHLGTKLLNRTTRKQSLTEAGQIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +  LQ    KP G +RI + +  G  +L   + +FL  YP+I I   
Sbjct: 61  LECKRILDDIAEAENSLQTLENKPKGTVRINSPVTFGNIVLAPIVADFLQDYPEINIDFT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN  ID   D  D  IR+ + + +SSLI R++    M   A+ +YL  C  P S+ EL 
Sbjct: 121 LDNSLIDPLHDPFDLVIRIGE-LANSSLIAREIARYEMVFCASANYLSECGTPTSLDELL 179

Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H  + F  GD+      + N    +D    + + + L  NS  ++    + G+GI L P
Sbjct: 180 RHQCLGFSYGDV------NANLALRLDTLAFDKQHTRLISNSGQALKVAALKGAGILLQP 233

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYP-EALKNTGKLKAFRNFIF 291
             ++ D   +  LV I+         V+  Y  +AL    K +AF +F+ 
Sbjct: 234 RLLLNDELSSGQLVEILSSDTPKPMPVHLLYKHKALPL--KTRAFVDFLL 281


>gi|83717101|ref|YP_439840.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650926|gb|ABC34990.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 354

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 24  NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 83

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 84  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 143

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 144 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 203

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 204 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 258

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 259 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 304


>gi|330816651|ref|YP_004360356.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327369044|gb|AEA60400.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 313

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFMRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++     +GQ+        +   YP++Q+ L
Sbjct: 66  LQRCEQILAYVDQAEAEASDAHARPSGKLKVHCMTSMGQHYTVPLAARYRQRYPEVQVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D +I L + +  S L+ ++L        A+  YL+    P    +L
Sbjct: 126 TLAQRLPDLLDEGFDVSIVLGRELPDSGLVSQRLGETFSVVCASRDYLERHGVPRRPSDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
           D H  +  G + P    D  W  T+  P G   +S       VN   ++      G G+ 
Sbjct: 186 DAHTCM--GMVAPGFQWD-EW--TLLGPDGNETLSVASPPFSVNVAEALAVAIREGMGVG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y       N + VR+M +  +    +Y  YP       K++ + +F+
Sbjct: 241 VLPLYTAITGLRNGDFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFM 291


>gi|238561104|ref|ZP_00442413.2| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|254204050|ref|ZP_04910409.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254209026|ref|ZP_04915373.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|147744934|gb|EDK52015.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147750249|gb|EDK57319.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|238525053|gb|EEP88482.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
          Length = 358

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 28  NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 87

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 88  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 147

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 148 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 207

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 208 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 262

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 263 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 308


>gi|107026962|ref|YP_624473.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691841|ref|YP_837374.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896336|gb|ABF79500.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649841|gb|ABK10481.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 303

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 128/294 (43%), Gaps = 15/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G +  
Sbjct: 12  LVAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL--LQGNLKEFLLLYPDIQIQ 125
              ++V+H L T   E     +KP G L +      G  L  L   L  F   YP+I+++
Sbjct: 71  --AAQVHHLL-TQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPNFRAAYPNIKLR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   +
Sbjct: 128 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L    L+   D   + M    W  +  VDR   +P+   + +NSY  I+Q  +LG G++L
Sbjct: 186 LANETLLRLEDGQRQWMSWSEWFDMNDVDRQKAQPQD--ITINSYPQIVQMTILGQGVSL 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              Y++    +   LVR+ E   +     Y   P         + F  ++F +A
Sbjct: 244 GWRYMIDACIEAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWLFEQA 297


>gi|323966589|gb|EGB62022.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|323978867|gb|EGB73947.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
 gi|327251846|gb|EGE63532.1| HTH-type transcriptional activator ttdR [Escherichia coli STEC_7v]
          Length = 310

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 136/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +PLS+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPLSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LVR++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|218662867|ref|ZP_03518797.1| LysR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 297

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 139/292 (47%), Gaps = 16/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE G   
Sbjct: 6   RIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATT-----IDLGQNLLQGNLKEFLLLYPD 121
           +R  S++  +++     ++E++ +  G+LRI+        D+GQ+L+     +F    P+
Sbjct: 66  YRTASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLI-----DFARENPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H  A P +L   R P 
Sbjct: 121 VSLEIAADDRFVDLIEEGFDVAIRITK-LEDSGMIARKISDFRIHLCATPEFL--TRYPN 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                D  N+    D   +      +    +          ++VNS  + ++  + G GI
Sbjct: 178 IEHPSDISNVPFIVDTNARSQASIRFYNPDNTSFAVAVSGPIEVNSPHATLRAALAGIGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +PD+I +   ++  LV +  D I     +Y  YP       K++ F +++
Sbjct: 238 AFIPDFIARKPIESGELVTLFNDYIPTDRGIYAVYPHRRYLPAKVRIFVDYL 289


>gi|117618325|ref|YP_856481.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559732|gb|ABK36680.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 301

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 130/260 (50%), Gaps = 7/260 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GS T AA+ L ++ S++S+ IS LE+ +G+ L +R  R L LTE G  + + 
Sbjct: 9   IFAAVVEAGSMTGAAKALGMTPSAVSQHISQLESLLGLTLLHRSTRRLNLTEAGEVVWQG 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L  T++ L E      G++RI   + +    L   L   L  +P + IQ+I D
Sbjct: 69  CQSLQQTLNQTELRLSEVRDSLLGEVRITAPVGMAGQPLARALSPLLQAHPGLCIQIIAD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+  +  D A+R+   +  S+L+ RKL    M   A+P YL     P S + L  H
Sbjct: 129 DEKRDLIAERIDVALRVGT-LSDSTLVARKLGQTRMLLCASPAYLARKGTPRSPEALLDH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + +   D++   +  F+      R   +PR+ C   N+ L + Q+ + G G++L P+  +
Sbjct: 188 DWLA-ADMLSGGLTFFDEKGQGHRVKPKPRVVC---NNVLPLRQFTLAGQGVSLQPEGEI 243

Query: 250 KDNPNLVRIMEDVITPSFTV 269
            D+    R++E  + P F V
Sbjct: 244 ADDLASGRLLE--LLPGFRV 261


>gi|148254504|ref|YP_001239089.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406677|gb|ABQ35183.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 329

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 6/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F  VA + SFT AA Q+  S  +IS  I  LE  + ++LF R  R + LTE G 
Sbjct: 6   FSELSAFAAVADTLSFTKAAAQIGCSLPTISHTIKSLEERLDVRLFNRTTRSVALTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      ++ +++     +     KP G LRIA         L   ++ FL  YPDIQ+
Sbjct: 66  RLLAEIQPIFEQVDQAIESINAFRDKPVGTLRIAVPRVFAIRGLGPLIRSFLAEYPDIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L +D+ + DI  +  D  IR    ++    + R +  +   A A+P YL     P S +
Sbjct: 126 ELAVDDTNSDIVRNRFDAGIRSGHRVERDMKVIRVVDDLQFVAVASPDYLAVHPAPSSPE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  HN I       + ++   W+        E  +   L VN +   +   + G GIA 
Sbjct: 186 DLGAHNCIRHRFPADETLQ--PWVFEQGEQRAEIAVDGSLIVNDFDLALNAALDGVGIAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L + +V  +     LVR++ D  + +  ++  +P   +    L+ F +F+
Sbjct: 244 LVEPLVDAHLAEGRLVRVLPDWSSATPGLFLYHPSRRQPPMPLQVFLDFV 293


>gi|311109043|ref|YP_003981896.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763732|gb|ADP19181.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           194 [Achromobacter xylosoxidans A8]
          Length = 355

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 141/289 (48%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  V  + SFT AA+ L L +++++  I  LE  +G++L  R  R + LT  G+
Sbjct: 4   FQAMQVFVRVVDANSFTRAADSLSLPRTTVTTIIQNLERLLGVRLLNRTTRRIGLTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E T+   QE++++  G+LRI     +G+ +L  +L +F   YPD+++
Sbjct: 64  GYYQHCVRILADVEETEACFQEAALRLKGRLRIDVPTCIGRLILIPSLCDFHDKYPDVEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  DC IR    ++ SSL+ R++ T+     A+P Y+     P +I 
Sbjct: 124 VLGLGDRPVDMVQEAVDCVIRAGD-LEDSSLVARRIGTLQTVTCASPTYVARHGLPQTID 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H+ + +     +   +  W   VD    E  +   + VN   + +   + G G+  
Sbjct: 183 ELRDHHAVHY--FSSRTGRNCAWDFRVDGKHQEVEMKGVVSVNEAGAYLDCGLKGFGLIQ 240

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              Y+         L+ ++         +   YP++ + + K++AF ++
Sbjct: 241 TARYMALPHLQTGELIEVLPQWKPSPTAISVLYPQSRQLSPKVRAFADW 289


>gi|307729369|ref|YP_003906593.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583904|gb|ADN57302.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 310

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 97/187 (51%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  +  V  +GSF+ AA++L L Q ++S+ I+ LE  +G++L +R  RGLT T+ G + +
Sbjct: 7   METYVCVVEAGSFSAAAKRLKLGQPAVSKSIAQLEDRLGVRLLFRSTRGLTPTDAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +++  +  ++++S   SG LRI   +   +  +   LK FL  +P++QI ++
Sbjct: 67  EHARRAIEEVDLAEQVVRDASTGLSGVLRIGAAVTFARLHILPALKRFLDSHPNLQIDIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ ID+     D A+R+   +  S++  R++          P Y      P S  +L 
Sbjct: 127 LDDRTIDLLEKGVDVALRM-GSLDDSTMTARRIARGRRLVVGTPGYFAEAGVPKSPADLS 185

Query: 188 KHNLITF 194
           +H  + +
Sbjct: 186 QHQAVVY 192


>gi|226194919|ref|ZP_03790510.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225932724|gb|EEH28720.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 330

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 130/296 (43%), Gaps = 22/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G +  
Sbjct: 1   MRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L 
Sbjct: 61  LRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIELT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L 
Sbjct: 121 LSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDLA 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
           +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +L
Sbjct: 181 RHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGML 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 236 PLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 280


>gi|15597643|ref|NP_251137.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107101898|ref|ZP_01365816.1| hypothetical protein PaerPA_01002943 [Pseudomonas aeruginosa PACS2]
 gi|116050394|ref|YP_790788.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891571|ref|YP_002440438.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235454|ref|ZP_04928777.1| hypothetical protein PACG_01367 [Pseudomonas aeruginosa C3719]
 gi|254240883|ref|ZP_04934205.1| hypothetical protein PA2G_01558 [Pseudomonas aeruginosa 2192]
 gi|296389140|ref|ZP_06878615.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313110634|ref|ZP_07796509.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9948495|gb|AAG05835.1|AE004672_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115585615|gb|ABJ11630.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167385|gb|EAZ52896.1| hypothetical protein PACG_01367 [Pseudomonas aeruginosa C3719]
 gi|126194261|gb|EAZ58324.1| hypothetical protein PA2G_01558 [Pseudomonas aeruginosa 2192]
 gi|218771797|emb|CAW27574.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310883011|gb|EFQ41605.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 307

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 136/304 (44%), Gaps = 41/304 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   A +GSF+  AE+L  + S++++ ++ LE E+G +LF R  R L LTE G  
Sbjct: 5   NALAMFVATAETGSFSRGAERLGKTPSALTKAVAHLEAELGARLFERTTRSLALTEAGQI 64

Query: 66  LHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                 +    L T   +IEL ES ++  G+LR+A         LQ     FL  +P I 
Sbjct: 65  YLEAARQSLETLRTAGQEIELLESELR--GELRLAAPPSFAAAFLQQACASFLEAHPRIS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ LD   +D+S    D  +R   PI    L+ R L    +   A+P YL     P   
Sbjct: 123 LRVDLDETFLDLSEGGYDLGLR-DGPIDLPGLVARPLAPNQIVLCASPAYLARQPAPQGP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLA------TVDRPIGEPRISC------LQVNSYLSI 231
           ++ ++H  + F    P   ++F W+        +D+P   PR++       L        
Sbjct: 182 EDFERHAWLVFQH--PSLNQNFWWMERDGARQRIDQP--RPRLASDNYDFLLAHLLAGLG 237

Query: 232 MQYC-------VLGSG--IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           +Q+C       +LG G  + LL DY     P           PS  ++  YP   +NT K
Sbjct: 238 LQFCPQWSVAPLLGEGRLVRLLGDYHFDPGP---------FGPS--IHVLYPGHRRNTRK 286

Query: 283 LKAF 286
           ++AF
Sbjct: 287 VRAF 290


>gi|294677004|ref|YP_003577619.1| glycine cleavage system transcriptional activator [Rhodobacter
           capsulatus SB 1003]
 gi|294475824|gb|ADE85212.1| glycine cleavage system transcriptional activator [Rhodobacter
           capsulatus SB 1003]
          Length = 307

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 22/291 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   AR+ S T AA +L L+QS++SRQI  LE ++G +LF+R  + + LT+ G+   
Sbjct: 14  LQAFETAARTQSITAAAAELSLTQSAVSRQIRALEAQLGTELFHRERQTIRLTQGGAAYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R       K+ T  + L+ +     G L +A     G   L   L +FL  +P I + L+
Sbjct: 74  RDIRAALQKISTASLTLRANPG--GGTLTLAILPTFGTRWLAPRLPDFLAAHPGITLNLV 131

Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                 D + +  D AI    P     + + L    +V       AA H         ++
Sbjct: 132 TRLTQFDFATEAVDAAIHFGVPDWPGAECTWLRGEHVVPACSPDLAARHGFA------TL 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIA 242
           QEL    L+      P   E F      DR    P ++  +  + + ++ Q  ++G G+A
Sbjct: 186 QELRAAPLLHLTSR-PDAWEKF-----FDRAGMAPQQLHGMLFDQFATVAQAAMVGLGVA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP+++++D   +  LV  +   +      Y C P        L AFR+++
Sbjct: 240 LLPEFLIEDEIASGRLVVPLAARMRSDEAYYLCAPRGRGPHPPLAAFRDWL 290


>gi|323529961|ref|YP_004232113.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323386963|gb|ADX59053.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 297

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 145/302 (48%), Gaps = 35/302 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L L+Q ++SRQI  LE      LF RHA+GLTLT +G  
Sbjct: 8   NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEDYYKFPLFKRHAKGLTLTAEGEM 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E + ++E  +I L+ +  +    L++ T +      +   +  F   YP++ +Q
Sbjct: 68  LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQTEYPELHVQ 122

Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +      D+D  ++  D AI         +QS  L++ +L  +      AP  LK+  +P
Sbjct: 123 ITTTWQHDVDFQLEPFDAAIIYGSSPGADVQSVPLLEERLTPV-----CAPDLLKD--KP 175

Query: 181 LS-IQELDKHNLITFGDLIPKCMEDFN-WLATV-------DRPIGE---PRISCLQVNSY 228
           L+ + +L +H L+       +   D+  WLA V        R I     P    L + + 
Sbjct: 176 LAGLGDLARHTLLH----PTRDHRDWKMWLAKVAESDPAHARAIDAEHGPSFDTLDMATN 231

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            ++  + V  S +AL+ + +      LVR  + V+   +  YF YP+++ +  KL  FR+
Sbjct: 232 AALQGFGVAISDLALIDEDVAAR--RLVRPFDTVLKTGWRYYFVYPDSVAHQQKLNLFRD 289

Query: 289 FI 290
           +I
Sbjct: 290 WI 291


>gi|260775779|ref|ZP_05884675.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608195|gb|EEX34364.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 303

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 135/269 (50%), Gaps = 17/269 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F++VA SGSF  AA+++ L +SS+S++I+ LE  + ++L  R  R L+LT+ G +
Sbjct: 8   ENLYLFHLVALSGSFQGAADKVGLPRSSVSKRIAKLEQTLNLRLLERSTRKLSLTQSGHE 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L + T  +   L  T+   ++   +P GK+RI  +  +   LL  ++      YPDI   
Sbjct: 68  LLKSTEPLQQVLHHTETLSEQVHARPQGKVRIGCSTLMAHRLLIPHIHALSDTYPDICFD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ +D+  ++ D AIR+   +  SSL+ R++       YA+P YL     P S + 
Sbjct: 128 FNLTDEVVDLIDNHVDIAIRIGH-LPDSSLLARQIGEKTFGWYASPAYLAQNGAPESPES 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGS 239
           L  H  + F +   K +   NW+     P G   ++ + V   +       ++Q   LG 
Sbjct: 187 LLHHRCLVFKN---KAVTLDNWVFV--HPNGG--VNAINVTPAMISDDARGLVQLATLGQ 239

Query: 240 GIALL-PDYIVKD--NPNLVRIMEDVITP 265
           GI ++ P +I ++  +  L  ++ D   P
Sbjct: 240 GIIMVDPAFIDQELRSNELAPVLTDYTHP 268


>gi|237728837|ref|ZP_04559318.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226909459|gb|EEH95377.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 299

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 5/293 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+ L L + S+SRQI  LE  +G +L +R  R + LT+ G   +
Sbjct: 7   MQLFIRVAELESFSRAADTLGLPKGSVSRQIQALENHLGTQLLHRTTRRVQLTQDGMIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+             SGKLR+   + + +NL+   L  FL  YP ++++L 
Sbjct: 67  ERAKDLLSNLDELDGLFHHDPSSISGKLRVDMPVGVARNLVMPRLPSFLHQYPGLELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   ++ S LI R L  +     A+P YL     P ++++L 
Sbjct: 127 SSDRLVDLIREGFDCVVRV-GTLKDSGLIARPLGKLTQINCASPQYLARFGYPENLEDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +    + F  +AT +          L VNS  +    C+ G GI  +P  
Sbjct: 186 SHAVVHYSVNLGTRAQGFE-VATENGTQWVKTGGMLTVNSTETYHAACLAGLGIIQVPRV 244

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            V+D      LV ++         V   YP     + ++  F  ++    +D+
Sbjct: 245 GVRDALRAGTLVEVLPQYRAEPMPVSLLYPHRRNLSRRVHLFMEWLTGVMKDY 297


>gi|167569906|ref|ZP_02362780.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 306

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G + H
Sbjct: 11  LHVFISVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYH 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
             T++ Y ++   +  L ++  +P G LRI + + L ++++  + L EF   YP + +++
Sbjct: 71  DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     P  + +L
Sbjct: 130 RYEDHLVDIVKERFDAGIRLADRLQPGMVGVKIAPALACALVATPGYLAQHGTPAKVADL 189

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            +H  I F    PK      W
Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208


>gi|300311424|ref|YP_003775516.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074209|gb|ADJ63608.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 327

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 127/274 (46%), Gaps = 11/274 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+Q+ L+ + +SR ++ LE  +  +L  R  R + LTE G + 
Sbjct: 7   NMRVFARVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTEAGERY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   + VKPSG+LRI      GQ  +  ++  +   YPD+ ++L
Sbjct: 67  LLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPDVAVEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ L + +  S LI R+L +      A+P YL     P    +L
Sbjct: 127 TLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGSTFSMLCASPAYLDKYGAPQQPADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
             H  +     I    E   W+  ++ P G   +   S  QVN   +++     G GI +
Sbjct: 187 LNHACLQLVSPISPLDE---WI--LEGPEGGTVVAVKSNFQVNVAEAMLTAIREGMGIGV 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           LP Y   D      +VR++      +  VY  YP
Sbjct: 242 LPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYP 275


>gi|330816606|ref|YP_004360311.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327368999|gb|AEA60355.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 314

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 124/277 (44%), Gaps = 18/277 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   VAR  SF  A+ +L +S +++S  ++GLE  + ++LF R  R + LT+ G + 
Sbjct: 8   ELEVVLAVARLASFRAASRELGMSTTAVSAAVAGLEARLKVRLFNRSTRSVALTDAGQRY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++     E       PSG LR+    +    L+Q  L E+L  YP +++ +
Sbjct: 68  VERVAPALAEIRRADEEAGTGPDVPSGTLRLNAPPETATMLVQPLLAEYLRRYPQVRVDV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + D + IDI  D  D  IRL + +    +       I M   A P YL     P    EL
Sbjct: 128 VSDLRLIDIVADGFDAGIRLAESVPQDMIAVPLTDEIRMRVVATPGYLARHGTPREPAEL 187

Query: 187 DKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSG 240
             H LI+   G  I      ++W   ++R  G+  +S L +    S    I Q  + G G
Sbjct: 188 VDHQLISMRLGRGI------YHW--ELER-AGQKFVSNLPMRLVFSDSRAIRQATLAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           +  L D+ V ++     LV +++D   P   +   YP
Sbjct: 239 LGFLSDWFVSEDLARGALVPVLDDWCQPFGGLRLYYP 275


>gi|260599340|ref|YP_003211911.1| hypothetical protein CTU_35480 [Cronobacter turicensis z3032]
 gi|260218517|emb|CBA33711.1| hypothetical protein CTU_35480 [Cronobacter turicensis z3032]
          Length = 302

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 7/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A  GSF  AAE L +S   +++ ++ LE  +G  L  R  R   L++ G    
Sbjct: 8   MTVFVKAAELGSFAAAAEALGMSPQMVAKHVAWLEARLGATLLNRTTRRQNLSDIGRSYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  + E      QE    PSG LR+   +  G   L   +  +L  YP+  I+L 
Sbjct: 68  ERCKVVLDEAEAADRVAQEMKGTPSGTLRVNAPVTFGATALAPFITRYLRQYPETHIELT 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D      +  IR+ + +  SS+I + L    + A A+P YL     P +  +L+
Sbjct: 128 LSDAIVDPLEAGYEVIIRIGE-LNDSSMIAKPLRPYKLIACASPVYLAREGIPQTPSDLE 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +G  I        W    D    E R+    + N + +++   V G G+ L P 
Sbjct: 187 RHACLVYG--IWSSTHPCRWRFEKDGKTEEARVQGRFRANDWKALLHAAVEGYGVTLGPA 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +++   +   LV+I+ D   PS  ++   P   + T K+++F
Sbjct: 245 DVLRAEMEAGRLVQILPDYTGPSRPMHVLVPPGRRQTVKIRSF 287


>gi|163854767|ref|YP_001629065.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258495|emb|CAP40794.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 305

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  +G+KL  R  R + LT
Sbjct: 1   MDIQLNDIALFVEVAKRKNFSHAAEALNMPASTLSRRVSELEQNIGMKLLNRSTRRIELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +  +      +L + + +P G+LR++    L Q  L   ++EF   +P
Sbjct: 61  EAGLVYFERCRPIVEEARVAHDQLLDMAAQPKGRLRVSMPSSLAQLFLPAVIREFRTQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI+    L+ + ID   +  D  +R  R+P   SSL+ R+++ +    YA+P YL+    
Sbjct: 121 DIECDFDLNMQHIDPISNPFDLVLRFGRQP--DSSLVARQIMLMKHRLYASPQYLERHGV 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
           P    +L  H       L P   E F+ W+      +    +S  L  N+   + +    
Sbjct: 179 PRVPSDLGHHEC-----LRPAMSEAFSYWVLHSGEKVERVAVSGRLAANNVGILSRLASQ 233

Query: 238 GSGIA--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIA  L+ D I +   N  LV ++ D       ++   P +     K +AF +FI
Sbjct: 234 GLGIAPLLVFDAIGQPIRNRGLVPVLPDWSLTPIPLFALMP-SRTIPAKTRAFLDFI 289


>gi|156935761|ref|YP_001439677.1| putative DNA-binding transcriptional regulator [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156534015|gb|ABU78841.1| hypothetical protein ESA_03631 [Cronobacter sakazakii ATCC BAA-894]
          Length = 308

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 114/247 (46%), Gaps = 4/247 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVELGSFTSAARQLEMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L     E L  YP + + L+
Sbjct: 61  QGCRRMLHEVQEVHEQLYAFNNSPIGTLRIGCSSTMAQNVLASLTAEMLRDYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  ++L ++ M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSKRLGSMPMVVCAAKSYLAQAGTPEKPADLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +        E         R + + R      N  +++ ++   G+GIA +P  
Sbjct: 180 NHSWLEYSVRPDNEFELIAPEGISTRLLPQGR---FVTNDPMTLSRWLKAGAGIAYVPLM 236

Query: 248 IVKDNPN 254
            V D  N
Sbjct: 237 WVIDEIN 243


>gi|170721659|ref|YP_001749347.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759662|gb|ACA72978.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 299

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 125/249 (50%), Gaps = 11/249 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F     +  F+ AA +L ++ SS++R +  LE+ +G  L  R  R +TLTE G++ +
Sbjct: 7   MRMFAATVDAQGFSAAARKLGVATSSVTRLVDALESALGATLLNRSTRQVTLTEAGARYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E++  L+     + +   +P G LR+   ++ G+ ++  +L +FL  +  +++ + 
Sbjct: 67  ARAREIFEALDKADASVADRGEEPVGVLRLCLPVEFGRRVIAPHLGQFLARHRALELDID 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS--IQE 185
           + ++  D+     D +IRL  P  S  L+ R+L        A+P YL  C EPL    Q 
Sbjct: 127 MSDRVDDLLGGRYDLSIRLGDPAPSEELVCRQLGRFERWLVASPDYLAGC-EPLQHPGQL 185

Query: 186 LDKHNL-ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243
           LD   L  ++G ++        W   +   + E  +     ++   +++   L GSGIAL
Sbjct: 186 LDHACLRFSYGPMVRP------WRLRLGDEVLELDVRGPLRSANADLLREAALAGSGIAL 239

Query: 244 LPDYIVKDN 252
           L D++V+++
Sbjct: 240 LADWLVRED 248


>gi|330819601|ref|YP_004348463.1| putative transcriptional regulator, LysR family [Burkholderia
           gladioli BSR3]
 gi|327371596|gb|AEA62951.1| putative transcriptional regulator, LysR family [Burkholderia
           gladioli BSR3]
          Length = 297

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 91/191 (47%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR  SFT AA QL +SQS++S  I GLET +G++L  R  R +  TE G
Sbjct: 5   NFSDLLAFLAVARERSFTKAASQLGVSQSALSHTIRGLETRLGVRLLTRTTRSVATTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +V    + ++E+    L E   KP G +RI  T    + +L   LK  L  YP ++
Sbjct: 65  ERLMQVAGPRFDEIESELNALSELRDKPVGLIRITATDHPVETILWPRLKPLLADYPGLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ +D    DI     D  +R    + +  +  R    + M    +P Y      P S 
Sbjct: 125 IEMSIDYNLSDIVAQRYDIGVRFGDQVANDMIAVRIGPDVRMMIAGSPEYFARHPAPKSP 184

Query: 184 QELDKHNLITF 194
           Q+L  H  I  
Sbjct: 185 QDLLDHACINL 195


>gi|327189544|gb|EGE56697.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 297

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE G   
Sbjct: 6   RIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121
           +R  S++  +++     ++E++ +  G+LRI+        D+GQ+L+     +F    PD
Sbjct: 66  YRSASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLI-----DFAAENPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H  A P +++  R P 
Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKVSDFRVHLCATPDFIE--RHPD 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                D  N+    D   +      +    +          ++VNS  + ++  + G GI
Sbjct: 178 LEHPSDISNVPFIVDTNSRTQGSIRFYNPDNTTFAVAVSGPIEVNSPHATLRAALAGIGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL+PD+I +   ++  L+ +  D I     +Y  YP       K++ F +++
Sbjct: 238 ALIPDFIARKPIESGELLTLFNDYIPTDRGIYAVYPHRRYLPAKVRIFVDYL 289


>gi|296532072|ref|ZP_06894847.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296267597|gb|EFH13447.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 314

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 10/264 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D L  F  V  SGS T AA +L L++S +S++++ LE ++  +L  R  R +  T
Sbjct: 1   MRPDVDALATFLQVVDSGSVTAAAARLGLAKSVVSKRVAQLEAQLSTQLLNRARRHVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+ L      +  +L+T   E+   S K SG+LR+A  +  G   L   +  F+  YP
Sbjct: 61  EAGALLAERARALLAQLDTVADEVMARSGKLSGQLRLAAPLSFGTRHLGPLIAGFMRDYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ L LD++ +D+     D  +R+ + +  S+L  R+L         +P Y      P
Sbjct: 121 EIEVVLDLDDRHVDLQAGAYDLGLRIGR-LADSALRARRLGLSRRVLCCSPDYAARHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCV 236
            S++ L  H+ + + +     +  F     V    G PR   L+     NS  ++++   
Sbjct: 180 RSLEALAAHSCLGYANAAAGHLWRF-----VPGDGGAPRSLVLRGRLTANSGEALLEAAC 234

Query: 237 LGSGIALLPDYIVKDNPNLVRIME 260
            G G+ +LP +++       R++E
Sbjct: 235 AGIGLVVLPRFLMAAPLREGRLVE 258


>gi|307730208|ref|YP_003907432.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584743|gb|ADN58141.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 312

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 141/318 (44%), Gaps = 34/318 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELQVFVSVIDSGSITAAAEKLGQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGEGFLQRARAILDAMEEAEESVTLKRRRPSGRLRVDAASPFMLHCIAPHMTAFSELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  + + +D+     D AIR+   +Q S+L  R L    +   A+P YL    EP
Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRI-GALQDSTLHARALGRSKLRVVASPAYLAAHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W----LATVDRPIGEPRISC------------- 222
            ++  L  H LI F        E  N W         R  GE   S              
Sbjct: 180 KTVDALRGHRLIGF-----TAPEHLNRWPLRERGGHKRTNGERSSSAAGRKPEPWKIEPS 234

Query: 223 LQVNSYLSIMQYCVLGSGIALLPDYI----VKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           +  +S  ++ Q  + G GIA L D++    ++D    P L   + D   P   VY+   +
Sbjct: 235 ITASSGETLRQLALAGWGIACLADFMTAADIRDGRLVPILGGALLDERQPVSAVYY---Q 291

Query: 276 ALKNTGKLKAFRNFIFLK 293
           +    G+++ F +FI  +
Sbjct: 292 SASLAGRVQCFLDFIAAR 309


>gi|227328769|ref|ZP_03832793.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 301

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 130/285 (45%), Gaps = 20/285 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +++ L  F  VAR GSFT AA QL ++Q ++S+ I+GLE  + I+L  R  R ++ T
Sbjct: 1   MKRNFNDLLSFVTVAREGSFTRAAAQLGVTQPALSQAITGLENRMQIRLLTRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L +     + ++E     L E   KP+G +RI    ++ +  L   L   L  YP
Sbjct: 61  AAGERLLQAIGNRFDEIEAELDNLTEFRDKPAGTVRITCGPNVLRTTLLPKLLPLLREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++   ++   +I  D  D  +RL + I    +       + M A A+P Y      P
Sbjct: 121 DIKLEFDANHGFRNIVADRFDAGVRLGEAIDKDMIAVPIGQPLRMAAVASPDYFAKHPIP 180

Query: 181 LSIQELDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIM 232
            +  EL +H      ++T G L         ++   D+  G+  +     L  N+   I+
Sbjct: 181 NTPHELTQHQCINQRMVTSGGL---------YVWDFDQDGGDLNVRVDGQLTFNTSEHIV 231

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           +  + G GIA LP+       +   L+R++E    P    Y  YP
Sbjct: 232 EAALAGFGIAFLPEEEFSPHIEEGRLIRVLEPWCAPFSGYYLYYP 276


>gi|206563637|ref|YP_002234400.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039677|emb|CAR55646.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 303

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 19/297 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AAEQL L + ++S  +  LE  + I+L  R  R + LT +G+  +
Sbjct: 7   MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTAEGATYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +   +++   P G +R+        N +   L +F   YPD+++ + 
Sbjct: 67  ERCVRLLADLDDAETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPDLRVAIS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P S  +L 
Sbjct: 127 TTDRFVDLVADGIDCAVRV-GALSDTSLVARRVGEMAQINCASPAYLARHGTPRSPDDLP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  +  G    +   + +W    D   GE       S + VNS  + +  C+ G G+  
Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDSGEMHTVKMHSVVSVNSSQAYLACCLAGLGLIQ 242

Query: 244 LP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            P D +     + +LV ++ +       V   +P     TG+  A R  IF+   DW
Sbjct: 243 APRDGLAPLLADGSLVEVLPEWRAGPLPVSVVFP-----TGRHLAPRVRIFV---DW 291


>gi|34495597|ref|NP_899812.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34101452|gb|AAQ57821.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 294

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 131/283 (46%), Gaps = 10/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  +AR GS   A  QL LS S++ + ++ LE  +G +L +R  R L LT +G +  
Sbjct: 7   IELFAQIARQGSLVAAGRQLGLSASAVGKGLARLEQRLGARLVHRSTRRLALTAEGQQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + E  + ELQ+    PSG+L++    + G  LL  +L +F+  YP + + L 
Sbjct: 67  ARCLRILEEAEAAERELQQGLAAPSGRLKVGVPHESG--LLTPHLADFMRRYPQVALDLD 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  +R  +P   S L  R+L +  M   A+P YL     P + ++L 
Sbjct: 125 YSDRLVDVIGEGFDVVVRGGEP-GDSRLAARRLGSYRMRLLASPGYLAEYGRPQTARDLQ 183

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +   +P   +   W L   +     P +S    N+  ++++    G GI  LPD
Sbjct: 184 RHRCLHY--RLPHSGKLLPWPLVGAEGEDASPPVSA-SCNTGEALIELAARGMGIVCLPD 240

Query: 247 YIVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAF 286
           + V+       +       +  S  +Y  +P       +L+AF
Sbjct: 241 FSVRRELAAGALALLDAPQVARSGNMYLLWPAMPAMPPRLRAF 283


>gi|134293273|ref|YP_001117009.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136430|gb|ABO57544.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 312

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 132/277 (47%), Gaps = 14/277 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  V  SGSFT AA Q++ S + ISR ++ LE ++G++L  R  R + +TE G 
Sbjct: 6   FAAIGIFVRVVESGSFTAAARQVNGSTAQISRAVAFLERQLGVRLLNRTTRHIGMTESGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +    +   +E    E +    KP GKLR+     LG   L   + ++ +  PD++I
Sbjct: 66  RYFKRAKSILADIEHASAEARNRLAKPYGKLRVHAMPSLGLRYLTSAMVQYQVSNPDVKI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L  +  ++  D  D ++     + +SS + + L   +    A+P Y++    P ++ 
Sbjct: 126 ELTLSERFPNLIEDGIDVSLMATADLPTSSYVSKALGGNYSVLVASPDYVQRSGMPSTVT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVL-GS 239
           +L  H+ +T     P    +  W   +  P GE     + S  QVN     M++ +L G+
Sbjct: 186 DLAAHSCLTLN--APNSAPE-KW--RLHGPDGEHAHLVQASPFQVN-MPDAMRFALLAGA 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           GI  L  +   D+     LVR++ +    + TVY  Y
Sbjct: 240 GIGPLTLHSAIDDLRRGTLVRVLPEYRVNALTVYALY 276


>gi|167565055|ref|ZP_02357971.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 323

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 139/302 (46%), Gaps = 27/302 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTLSQTMLSRLLPEFLHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++Q+ + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L+    P
Sbjct: 125 VRVQIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPGLLQQNAPP 184

Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231
           +   +L + + +    GD        FN +A    P G       EPR   L     ++I
Sbjct: 185 IVPADLSRFDTLDTPSGD----GRHVFNLIA----PDGTRHAHEHEPR---LVTADLMTI 233

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +  + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R 
Sbjct: 234 REAVLDGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRA 290

Query: 289 FI 290
           F+
Sbjct: 291 FV 292


>gi|116695723|ref|YP_841299.1| transcriptional regulator [Ralstonia eutropha H16]
 gi|113530222|emb|CAJ96569.1| transcriptional regulator [Ralstonia eutropha H16]
          Length = 339

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 16/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A  GSFT AA    ++  ++SR +  LE  +G++LF R  R + LT++G    
Sbjct: 49  IELFCLAAELGSFTAAAVAAGVTPPAVSRTVQRLEERLGVRLFVRTTRQIRLTDEGRVYF 108

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +     +L   + ++      P+G+LRI+         +   L  F   YP+++I + 
Sbjct: 109 EQSRGALAQLVDAERQISGQQAAPAGRLRISLPTPYAHYRVLPVLPAFRERYPEVEIDVH 168

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+++D + D  D ++R R P   S+LI RKL    +   A P YL+    P S+++L 
Sbjct: 169 ISNRNVDFADDTYDLSVRGRAP-DDSNLIARKLEDAELVVVATPGYLRRAGTPQSLEDLL 227

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS---IMQYCVL---GSGI 241
           +H  I F    P       W   V+   GE     +   SY +   I+    L   G+G+
Sbjct: 228 RHECIQFER--PSSGRRIPWTFRVN---GED-TDIVTAGSYAASEDILGGATLVRAGAGL 281

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                ++V+    +  LV +++D    +      YP A   + +++AF +F+  K
Sbjct: 282 FQTYRFVVEQDLRDGTLVEVLKDYGGSTRPFVLLYPSARHVSRRVRAFVDFLVEK 336


>gi|17549476|ref|NP_522816.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431729|emb|CAD18408.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 329

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 137/297 (46%), Gaps = 21/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LE  +G++L  R  R + +T+ G
Sbjct: 16  DLNDLVLFAAVVTHGSFSAAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           S  +    EV  +     +E+ E +  +PSG+LR++  + +    L   L +FLL  P++
Sbjct: 76  SAFY-AQCEVMTQAARAALEVAEHAGERPSGRLRVSCPVGVAHAFLAPVLSKFLLAQPEV 134

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L + N+ +D+  +  D A+R+R  +  S+L+ R  V  ++   A+P ++       S
Sbjct: 135 RLELDVTNRRVDVIGEGYDVALRVRSTLDDSNLVVRTFVASNLVLAASPSFVAGHGPFDS 194

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + L     +          E   W       ATVD       +     +    + Q  +
Sbjct: 195 AESLRGVAGVG---FGGVGGERARWRLTSPEGATVDIEY----VPAFVTDDLFLLGQVAM 247

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+A LP  +  D   +  LV ++ D   P   ++  +P      G + A R FI
Sbjct: 248 AGVGVAQLPVNLCADAIRDGRLVMLLPDHRQPVHQLHAVFP---SRRGLVPAVRAFI 301


>gi|327190353|gb|EGE57451.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 309

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 15/278 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  VA   SFT AA +L ++QS++S  +  LE  +G++L  R  R +  TE G
Sbjct: 16  NFNELLLFLAVAEERSFTRAAAKLGVAQSTLSYAVKELEARMGLRLLTRTTRSVATTEAG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    ++E     L     KP+G +RI  +    ++++   L   L  YPDI+
Sbjct: 76  ERLRQSLAPRISEIEADIEALMAYRDKPAGTVRITLSNHAMESVVWPKLAPILGEYPDIK 135

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +DN   +I  D  D  +RL + ++   +  R      +   A+P Y K    P + 
Sbjct: 136 LELSVDNSFRNIVEDGFDAGVRLGESLEKDMVAVRIGPDWRLVVVASPDYFKTRPVPTTP 195

Query: 184 QELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           QEL +HN I       G L     E  N    V R  G+     L  N+   ++   + G
Sbjct: 196 QELMQHNCINRRLDRIGGLYAWEFEKNNEEVRV-RVEGQ-----LTFNTDREMVGAALQG 249

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
            GIA +P+  V  +     L  +++D  TP F  Y+ Y
Sbjct: 250 YGIAFVPESYVATHLVERRLTLVLDD-WTPKFAGYYLY 286


>gi|317405053|gb|EFV85401.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 299

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 113/242 (46%), Gaps = 5/242 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A  G F  A   L LS S++ + ++ LE ++ ++LF R  R + LTE+G   +   
Sbjct: 10  FVRSAELGGFAAAGRDLDLSPSAVGKAVARLEQDLHVRLFQRSTRRMQLTEEGRLFYERC 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   L+     L ++  +P G+LR++  + +  + L   L  F   YP I++ +  ++
Sbjct: 70  KRILEDLDDAHAMLSQTLREPRGRLRVSAPL-VSYHFLLPVLPAFAARYPHIELDMDFND 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D AIR    +  S L  R L +  +  YAAP YL     P   ++L++H 
Sbjct: 129 RIVDLIGERVDVAIR-SGDLPDSRLAARTLGSFRLRLYAAPDYLARHGTPQRARDLERHR 187

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            + F    P       W   +      PR+ +    N+  +++   + G GI  +PD++ 
Sbjct: 188 AVRF--RYPNAGTLQEWPLALAAGEAAPRLTAAFTCNNMEALLGATIQGFGIGCMPDFLA 245

Query: 250 KD 251
           ++
Sbjct: 246 RE 247


>gi|260775979|ref|ZP_05884875.1| putative transcriptional regulator LYSR-type [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608395|gb|EEX34564.1| putative transcriptional regulator LYSR-type [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 306

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 132/287 (45%), Gaps = 8/287 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  +A+      A+  L L  ++++R++  LE+E+G +L +R AR   LT +G  
Sbjct: 3   DDMALFVHIAQLRGLKSASAALALPAATVTRRLKKLESELGCQLIHRSARQFRLTAEGHA 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +   LE T+  + +     +G L +    ++    LQ    EFL  YPD+ + 
Sbjct: 63  YYAAFAPLVADLEKTRDRMSQQVASLAGPLTVLAPTNIALGFLQPLWSEFLSAYPDVVLD 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+N + D+  + AD A+R+  P   S L Q  L  I     A+P YL       ++ +
Sbjct: 123 LKLNNDNKDVVQEQADIALRI-GPQPDSGLYQVGLGAIPTLLVASPAYLAKAPPLTALTD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L++H  IT   L    M+      T    I  PR   LQV+       +   G GIALLP
Sbjct: 182 LNQHRCITVSHLPVWPMQRVGLDQT--EVIRLPR--GLQVDDIRMACLWAQDGLGIALLP 237

Query: 246 DYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              V    ++  LV  + + + PS  VY  +P       K +AF+ F
Sbjct: 238 ATEVLSSLESETLVTPLSEWVGPSRDVYLIWPSGQLMGAKAQAFKRF 284


>gi|209516326|ref|ZP_03265183.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503262|gb|EEA03261.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 297

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 142/303 (46%), Gaps = 37/303 (12%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA  L L+Q ++SRQI  LE      LF RHA+GLTLT +G  
Sbjct: 8   NALQIFETVARHRSFTRAANHLCLTQGAVSRQIIALEEYYKFPLFKRHAKGLTLTAEGEM 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E + ++E  ++ L+ +  +    L++ T +      +   +  F   YPD+ +Q
Sbjct: 68  LLPAVKESFARIE--EMSLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQSEYPDLHVQ 122

Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +      D+D   +  D AI         +Q+ SL + +L  +       P  LK+  +P
Sbjct: 123 ITTTWQHDVDFQSEPFDAAIIYGSSPGADVQAVSLFEERLTPV-----CTPELLKD--KP 175

Query: 181 LS-IQELDKHNLITFGDLIPKCMEDFN-WLA-----------TVDRPIGEPRISCLQVNS 227
           L+ + +L +H L+       +   D+  WLA           T+D  +G P    L + +
Sbjct: 176 LAQVADLTRHTLLH----PTRDHRDWKMWLAKAAETDAAGAATIDAELG-PSFDTLDMAT 230

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
             +   + V  S +AL+ + +      LVR  + V+   +  YF YP+++    KL  FR
Sbjct: 231 NAAAQGFGVAISDLALIDEDVAAR--RLVRPFDTVLKTGWRYYFVYPDSVAQQQKLNLFR 288

Query: 288 NFI 290
           ++I
Sbjct: 289 DWI 291


>gi|167616442|ref|ZP_02385074.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142991|ref|ZP_05591253.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 336

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 66  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286


>gi|71733730|ref|YP_273003.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554283|gb|AAZ33494.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 310

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 128/257 (49%), Gaps = 15/257 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGS + AAE++  + S +SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  ++E+ +  L  S   P+G+LRI        + +  ++ EF   YP
Sbjct: 61  EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  ID+     D AIR+   +  S+L  R L +  ++  A+P YL+    P
Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRI-GVLPDSTLHARSLGSCLLNIVASPAYLQRHGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W---LATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + ++L +H L+ F  +     E  N W    A  DR   +P IS     S    +++ V
Sbjct: 180 KTAEDLAQHVLVGFTHV-----ESLNQWPLRHAEGDRLSIKPVISA----SSGDTLRHLV 230

Query: 237 L-GSGIALLPDYIVKDN 252
           L G GIA L D++  D+
Sbjct: 231 LEGVGIACLSDFMTNDD 247


>gi|332306024|ref|YP_004433875.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173353|gb|AEE22607.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 301

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 135/289 (46%), Gaps = 14/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +++F  VA + + + A  +  LS +  S  +S LE  +G++L +R  R ++LT++G  
Sbjct: 5   DYVKLFIRVAATHNISKAGAEFGLSSAVASAHLSKLEESLGVRLIHRTTRKVSLTDEGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V    +   +       K  GKLRI   +      L   L EF+ ++PD+ ++
Sbjct: 65  FLPHARDVLVSADIA-VSSVRGGAKTRGKLRITAPVSFSHIHLIPALNEFMEIFPDLSVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +DI     D AIR    ++ S+LI RKL   +    A+P YLK    P + + 
Sbjct: 124 LRLSDTIVDIVEGGFDVAIR-NAELKDSALIARKLAIDNRIICASPDYLKKHGRPTTPEA 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +HN I         + + NWL    + +   +       ++  ++   C+ G GI + 
Sbjct: 183 LQQHNCINL-------LGNDNWLFKTSKGLLNIKTRGAFTTDNGKAVCDACLNGMGIVMC 235

Query: 245 PDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +I  ++     LV+I+ED  +    +++  YP +     K++AF ++
Sbjct: 236 STWIAYEHLRAGTLVQILEDYPLEADASIWAVYPSSKLVAPKVRAFIDY 284


>gi|332305796|ref|YP_004433647.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173125|gb|AEE22379.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 305

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 145/288 (50%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            +VF +VA+  SF+ AA+ L+L  S++SRQI+ LE  +G++L  R  R + LT++GS   
Sbjct: 7   FKVFQLVAQEQSFSRAADSLNLVPSAVSRQINELEHWLGVRLLNRTTRTVHLTKEGSDYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             TS++   ++  + +  +      GKL+I+  + LGQ+LL   +  F   +P++++ L 
Sbjct: 67  AKTSQIIELVDALKFKKNDHK-NIEGKLKISAPMMLGQHLLPQIVAGFKRDFPNVKLSLF 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D A+R+   +  S+L+ RKL  +     A+  YL +   P    +L 
Sbjct: 126 LLNRKVDLIEEGFDLALRVSH-LADSNLVARKLGNLSFATVASSDYLASNGTPQVPTDLQ 184

Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           +H+      LI   +   N W   ++      +++  +  N  L+++     G G+A LP
Sbjct: 185 QHSC-----LINSAVSSANRWGYKINGRGKNVKVAGDIDANESLALLSLAKQGQGVAFLP 239

Query: 246 D-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + Y+ K+  N  LV ++ +       +   Y      +  LK F +++
Sbjct: 240 EVYVQKELANGTLVEVLREFRPEPLPINLLYVSNRLVSPVLKTFIDYV 287


>gi|107026392|ref|YP_623903.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692419|ref|YP_837952.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|254248467|ref|ZP_04941787.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|105895766|gb|ABF78930.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650419|gb|ABK11059.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|124874968|gb|EAY64958.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 315

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G   
Sbjct: 6   NMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGESY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   +PD+ I+L
Sbjct: 66  LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPALTRYHAQFPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P   Q+L
Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGVPARPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H  +T   L         W+  ++ P G  +I     +Q N+  S+      G GI +
Sbjct: 186 AAHACLT---LCTPAFPTHEWV--LEGPDGVEQIHVAGPVQTNTAESLALAIRDGIGIGM 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   D   +  LVR++   I     VY  YP            R F+  K R W
Sbjct: 241 LPLYSAIDALRDGTLVRVLPAHILQKMNVYALYPS-----------RRFVDAKVRTW 286


>gi|53721781|ref|YP_110766.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|167741983|ref|ZP_02414757.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167819166|ref|ZP_02450846.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167827541|ref|ZP_02459012.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|254192876|ref|ZP_04899311.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254300071|ref|ZP_04967517.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52212195|emb|CAH38215.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|157810406|gb|EDO87576.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|169649630|gb|EDS82323.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
          Length = 336

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 66  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286


>gi|90579567|ref|ZP_01235376.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
 gi|90439141|gb|EAS64323.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
          Length = 273

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 130/262 (49%), Gaps = 8/262 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +++S +S++IS LETE+G++L YR  R LTLTE G  L+     + +  +     ++  S
Sbjct: 1   MTKSVVSKRISKLETELGLQLIYRTTRKLTLTEPGEVLYHRAKSISYVAQAAFDSVKGYS 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
              SGK+R++     G+ +L   + +F   +P + + + L+N  +D+  D  D  IR   
Sbjct: 61  EALSGKIRMSVPTISGELVLAKAVSDFCQKHPGLSVDMSLNNHFVDLVADNYDLVIRTGY 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            ++ SSLI R +        A+P Y+++  +P   ++L+ HN + +    P+    F+W 
Sbjct: 121 -LEDSSLIARHIFNSRWVICASPAYIEHYGKPEKPKDLNCHNCLGYN---PQSTGPFDWQ 176

Query: 209 ATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVIT 264
                 I   ++S     ++ +++ +  + G+GIA LP+ +V D      LV ++     
Sbjct: 177 FIKQNKIYTQKVSGNFSSDNAIALKKNVLAGNGIAYLPNCLVHDELERGELVELLSTHAG 236

Query: 265 PSFTVYFCYPEALKNTGKLKAF 286
               +Y  YP   K   +++A 
Sbjct: 237 KVVGIYAVYPYTRKPAKRIQAL 258


>gi|332715799|ref|YP_004443265.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062484|gb|ADY66174.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 296

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 9/287 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA   +F  A + L LS S++ + ++ LE  +G++LF R  R ++LT +G+ L
Sbjct: 6   EIDAFVRVAERLNFAKAGQSLGLSPSAVGKSVARLEASLGVRLFNRTTRQVSLTSEGAML 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L      + ++   P G LR+ T   +G   L   + EF   YPDI ++L
Sbjct: 66  FERYRSILTDLRDAHEAVTDNLALPRGSLRV-TLPTIGYRFLLPIVPEFRRRYPDIDLEL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +D+     D AIR  + +  SSLI R+L        A+P Y +    P    +L
Sbjct: 125 DFNDRRVDLIEGGFDAAIRSGE-LDDSSLIARRLGPFRFILCASPDYFQRMGTPRHPSQL 183

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  + F    P       W L   D P+   RI+ L   +  +I    + G G+A +P
Sbjct: 184 PEHEALRF--RFPTSGRFQEWLLENGDNPLSSMRIA-LTCGNMEAIRAAAIDGMGLAYMP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +++  D   +  L  ++ + +         +P A     +L+AF +F
Sbjct: 241 EFLATDAIRDGLLETVLNEHLAAPGQFSIVWPSARFMAPRLRAFIDF 287


>gi|323965229|gb|EGB60687.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|327254591|gb|EGE66207.1| putative transcriptional regulator [Escherichia coli STEC_7v]
          Length = 294

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 131/282 (46%), Gaps = 21/282 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +   V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLLMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDI+
Sbjct: 66  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYC 235
            +L  H  I   F D        + W    D      RP G+  +S    +SY+   +  
Sbjct: 186 TDLKAHPCIAYQFAD-----GSVYQWELNQDDKKITHRPEGQWALS----DSYME-AEAA 235

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            LG G+A +P  +V D+     L+R+++        ++  YP
Sbjct: 236 RLGLGLAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYP 277


>gi|308188530|ref|YP_003932661.1| hypothetical protein Pvag_3063 [Pantoea vagans C9-1]
 gi|308059040|gb|ADO11212.1| Uncharacterized HTH-type transcriptional regulator yafC [Pantoea
           vagans C9-1]
          Length = 322

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 138/308 (44%), Gaps = 42/308 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  +  SGS + AA QL  +Q ++SR++  LE  +G+KL  R    L LT+ G +
Sbjct: 11  DLMQTFIRIVESGSLSAAAAQLGTTQPTVSRRLQTLEQRLGLKLILRTTHALKLTDDGER 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++       + EL  +S  P G LR+      GQ+ L   L ++L  YP + I+
Sbjct: 71  CYAQARQLLATWHALEDELTGASDDPVGTLRVRAPHAFGQDQLIAPLVDYLHRYPRLNIE 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L+++  D   +  DCAI++  P    S++   L  +     AAPH L   + P  I+ 
Sbjct: 131 WMLNDRTPDFMAENVDCAIQVGAPT-DPSVVAILLAEVPRIVVAAPHLL--AQHP-PIER 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD--------------RPIG---EPRISCLQVNSY 228
           + +             + D  WLA                 +P+     PR+S    +S 
Sbjct: 187 VAQ-------------LRDLPWLALTSFYRNEVALQKIDDGQPVNLAITPRLSS---DSL 230

Query: 229 LSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            ++ +  + G G A++  + V++   + +LV++M     P   V+  YP A     +L+ 
Sbjct: 231 YAVRKAALAGMGAAIVSSWAVQEDLADGSLVQLMPAWQAPPLPVWLTYPWASYYPARLQH 290

Query: 286 FRNFIFLK 293
           F  F  +K
Sbjct: 291 F--FAMIK 296


>gi|190895534|ref|YP_001985826.1| transcriptional regulator LysR family [Rhizobium etli CIAT 652]
 gi|190699479|gb|ACE93563.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 317

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 135/301 (44%), Gaps = 12/301 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT  
Sbjct: 7   FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++       +  + E  + +L + S+   G +R++             L  F   +P +
Sbjct: 67  GTRFVETAERMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFCATVLHRFAARHPHL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+   + + +S   AD ++ L +P +       KL   H+  Y +  YL        
Sbjct: 127 ALELVTIQQIMSLSRKEADLSVVLDEP-KGGPYFAEKLTDYHLQIYGSRDYLAKAPAITC 185

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             +L +H  +++  ++I       ++L+ V      PRI    Q +S  + +     G G
Sbjct: 186 RDDLLEHPFVSYIEEMI--FAPGLDYLSDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWK 298
           + +LP +     P LVR++   I      +      LK   +++A  +F+   ++  D +
Sbjct: 239 LCILPYFFASRYPELVRVLPAEIDLKRQYWITCHRDLKQAPRVRAVIDFLREAVRGEDAR 298

Query: 299 F 299
           F
Sbjct: 299 F 299


>gi|145632891|ref|ZP_01788624.1| DNA topoisomerase I [Haemophilus influenzae 3655]
 gi|145634327|ref|ZP_01790037.1| DNA topoisomerase I [Haemophilus influenzae PittAA]
 gi|229844177|ref|ZP_04464318.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           6P18H1]
 gi|144986547|gb|EDJ93113.1| DNA topoisomerase I [Haemophilus influenzae 3655]
 gi|145268307|gb|EDK08301.1| DNA topoisomerase I [Haemophilus influenzae PittAA]
 gi|229813171|gb|EEP48859.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           6P18H1]
          Length = 305

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSESYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GIA L
Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|126443473|ref|YP_001062110.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|167578304|ref|ZP_02371178.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167723002|ref|ZP_02406238.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167897612|ref|ZP_02485014.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167914278|ref|ZP_02501369.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167922186|ref|ZP_02509277.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|254183174|ref|ZP_04889766.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254189797|ref|ZP_04896306.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254262850|ref|ZP_04953715.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|126222964|gb|ABN86469.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|157937474|gb|EDO93144.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|184213707|gb|EDU10750.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254213852|gb|EET03237.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 336

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 66  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286


>gi|53717282|ref|YP_105356.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|124381629|ref|YP_001024686.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126445948|ref|YP_001079021.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|254355695|ref|ZP_04971975.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52423252|gb|AAU46822.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|124289649|gb|ABM98918.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126238802|gb|ABO01914.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|148023788|gb|EDK82850.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
          Length = 336

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 66  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286


>gi|289662529|ref|ZP_06484110.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669761|ref|ZP_06490836.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 298

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 138/291 (47%), Gaps = 11/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA    F+ AAE L  S +S++RQ++ LE  +G +L  R  R ++LT  GS 
Sbjct: 5   DAMRVFTAVAERSGFSAAAEALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAGSA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   L+  +  +   +++P+G LR+   +  G   L   L  F   YP +++ 
Sbjct: 65  YYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L ++ +D+  +  D AIR+ R+P  +  LI R+L  + M   A+P YL     P    
Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APMLIARQLGKVRMLPCASPAYLARAGTPQHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  + +    P   E     +  D  +   R+   L+ N+   +    + G GI +
Sbjct: 183 DLAGHECLLY-HYSPSGDEVRFQGSQGDIDV---RLHGGLRANNGHVLNAAALAGQGIVM 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            PD++ + +     LVRI+ +       ++  Y        K+++F +++ 
Sbjct: 239 QPDFLAEPHLAAGRLVRILPEYTLAEIGIFAVYTSRSHLAPKVRSFIDYLI 289


>gi|330818048|ref|YP_004361753.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327370441|gb|AEA61797.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 334

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 135/297 (45%), Gaps = 23/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK- 65
            +R+F  VA + SFT AA  L+ +   +SR I+ LE  +  +L  R  R L LTE G + 
Sbjct: 7   NMRIFVCVANANSFTAAARLLNTTIPQVSRAIAALEAHLHTRLLNRTTRRLALTEAGERY 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           LHR  S +   L+  + E ++++V PSG LR+   + LGQ+ L     ++   YPD+ + 
Sbjct: 67  LHRCRS-ILGYLDEAEAEARDANVNPSGCLRVHCAVSLGQHYLVPAFAKYRQRYPDVLLD 125

Query: 126 LILD-------NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           + L        ++  D+S+   D        + SS LI  +L        A+  YL    
Sbjct: 126 MTLSQRAPALVDEGFDVSVVVGD------DELPSSGLIGVRLGETFGVLCASRDYLDRHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPR-ISCLQVNSYLSIMQYCV 236
            P  I ++ +H  + +    P   E   W L   D P    R  S  +VNS+ ++     
Sbjct: 180 SPRRIADMARHACVAYEAPAPGRSE---WDLVGPDGPEHVARAASSFRVNSHEAMAVAIR 236

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI +LP +       + + VR+M    +PS  ++  Y        K++ + +F+
Sbjct: 237 EGMGIGVLPVHAAIGGLLSGDFVRVMPQCRSPSGVIWALYSSRQYVDAKIRTWLDFL 293


>gi|293407138|ref|ZP_06651062.1| LysR family transcriptional regulator YhjC [Escherichia coli
           FVEC1412]
 gi|298382888|ref|ZP_06992483.1| LysR family transcriptional regulator YhjC [Escherichia coli
           FVEC1302]
 gi|291425949|gb|EFE98983.1| LysR family transcriptional regulator YhjC [Escherichia coli
           FVEC1412]
 gi|298276724|gb|EFI18242.1| LysR family transcriptional regulator YhjC [Escherichia coli
           FVEC1302]
          Length = 299

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 67  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR     +   +I R L  + +   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIRTGASPE-DGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLIYPQRRELSRRVNLFMQWL 290


>gi|119472999|ref|ZP_01614834.1| Transcriptional regulator, LysR family protein [Alteromonadales
           bacterium TW-7]
 gi|119444619|gb|EAW25930.1| Transcriptional regulator, LysR family protein [Alteromonadales
           bacterium TW-7]
          Length = 305

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 120/276 (43%), Gaps = 17/276 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  V   GSFT AA  L LS + ISR ++ LE  +  +L  R  R + LT++G 
Sbjct: 19  WDGIDEFIAVGEEGSFTAAARILGLSVAHISRHVTALEQRLNTQLLTRTTRKVVLTKEGE 78

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + H ++     L      P GK+++   +  G+  +   +  F+  +PD+++
Sbjct: 79  IFLHQIKHLQHAMDDATQGLASHQTTPKGKIKLTAPVMFGETFIMPIVHNFMHDHPDVEV 138

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+  D+     D AIRL   ++ SSL  R+L        A+P YL+   EP ++ 
Sbjct: 139 IANLSNEQEDLLEGGFDLAIRLGH-LKDSSLKARRLSDRRFIMCASPAYLRRFGEPHTLG 197

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241
           EL  H          +C+   +    V+    E  I     L  NS  +++     G GI
Sbjct: 198 ELHNH----------QCLVGNSSYWRVNENEREKHIKIAGRLHCNSGWALVDGAKKGLGI 247

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274
             LPDY + +  N   LV ++         V+  YP
Sbjct: 248 VQLPDYYIDNELNSGELVPVLTSYQPKQEGVWGVYP 283


>gi|157373088|ref|YP_001481077.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157324852|gb|ABV43949.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 337

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 141/306 (46%), Gaps = 32/306 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  ++F +V   GS + AA  L  S+ ++SR +S LE+   ++L  R  R +TLTE GS 
Sbjct: 5   DAFKIFAMVGDRGSISGAARALGESKVTVSRAVSRLESLYNVRLVERTTRRITLTEVGSV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI- 124
           LH     +  ++E    E+      P+G LRI  T D+ + LL  NL EFL  YP+I + 
Sbjct: 65  LHARCIRIREEMEDADAEIATYRSSPAGILRIGCTSDVAKTLLTPNLPEFLANYPEIDVR 124

Query: 125 -----QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
                +L+ ++  +D+ +    C       +  S L  RK+  +     A+  Y++    
Sbjct: 125 VRVGERLLPESNILDVVL---HCGW-----LSDSRLTARKIAEVKNILVASREYVQANGI 176

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLS-----I 231
           P S  +L+ H +I    L    +E     A V R     G+ R +      +LS     I
Sbjct: 177 PTSPDDLEDHAIIGNFYLDAAAIEPGPLPAYVPRLEISRGQERFTLPTYRRFLSTDHSQI 236

Query: 232 MQYCVLG------SGIALLPDYIVKDNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLK 284
           ++    G      +GI  LP  +  +   LVRI+ D  I+ S  +Y  Y + L +  KLK
Sbjct: 237 LELVKHGRVIAPITGIWALPGLLSGE---LVRILPDYEISESPQLYALYLDRLASIPKLK 293

Query: 285 AFRNFI 290
            F +FI
Sbjct: 294 VFLDFI 299


>gi|49085314|gb|AAT51268.1| PA0876 [synthetic construct]
          Length = 315

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 135/299 (45%), Gaps = 25/299 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT AA++L L+ + +SR ++ LE  +  +L +R  R + LTE G + 
Sbjct: 6   NMRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALTEAGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +PSG L++     +GQ+ L   + ++   YP++   L
Sbjct: 66  LMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYPEVGFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L N+  DI     D ++ +   +  S  + + +   +    A+P Y+     P    EL
Sbjct: 126 TLANRITDILDGGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFPKLPAEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGI 241
             H  +    L+   M    WL   D P G+  ++C+     QVN+  ++ +  V G GI
Sbjct: 186 SAHRCLR---LVNSVMSLDRWL--FDGPDGQ-ELACINQTHFQVNTADAMTEAVVSGMGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             LP Y   +   + +LVR++         VY  YP            R ++  K R W
Sbjct: 240 GALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPS-----------RQYLDAKIRTW 287


>gi|134293628|ref|YP_001117364.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136785|gb|ABO57899.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 311

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 136/294 (46%), Gaps = 8/294 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT  A  L  +  +ISR +S LE  +  +L  R  R L +T+ G + +
Sbjct: 7   MSVFVKVVEMGSFTAVANHLDTTVGNISRAVSVLEDNLNTRLLQRSTRRLVVTDAGRRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +   +E  + E +++ ++P G LR+     LG+ L+   +  +   YP++ + L+
Sbjct: 67  ERSVAILSDIERAEAEARDALLEPRGLLRVHAVPGLGRQLVSQAVLAYRSAYPEVSVDLM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  ++  +  D AI + + +  S+ + +K+ T H    A+P YL     P  +++L 
Sbjct: 127 LSQRMPNLLEEQLDVAIVIARTLPDSAYVSQKIGTSHCILAASPDYLARHPAPECVEDLV 186

Query: 188 KHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H   L++  D  P   ++++        +  P  S   VN   ++      G+GI L+ 
Sbjct: 187 GHTCVLLSTVDYAP---DEWHLQGRAGEAVYRPTGSHFSVNDMDAMSTVLREGAGIGLIA 243

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +   D+    +LVR++ +  T    VY  Y        K+K F + + ++  D
Sbjct: 244 AFSAIDDLRKGSLVRVLPEFHTAQRNVYAVYSSRQFVDAKIKRFIDVLKVQVGD 297


>gi|326793670|ref|YP_004311490.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326544434|gb|ADZ89654.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 304

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 138/291 (47%), Gaps = 22/291 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR+G+ +  A +L+L+ S+++++++ LE+ +G++L  R  R ++LT +G       
Sbjct: 10  FISLARNGALSATARELNLTPSAVTKRLTNLESRLGVRLVNRTTRKVSLTNEGEVYLEYI 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  ++E  +  + +    P G LR+   +  G+  +   L EFL   P ++IQL+L +
Sbjct: 70  KNIKEQIEEMEAVITKRRSTPRGLLRVNAPLGFGRTYIAPILSEFLSENPAVEIQLMLTD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + + +  D  D  IR  +    S +I RK+        AAP YLK   +P S  +L +HN
Sbjct: 130 RPMTLPDDSIDVCIRFGQ-APDSRVIARKIAPNRRLVCAAPSYLKRYPKPNSPADLAEHN 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSGIAL- 243
            I         ++    +A+  R     +   ++V + +        +++ + G G+ + 
Sbjct: 189 CI--------IIKQNQQVASAWRFYKNGKEEVIKVKANMVTNDGEIALRWAIDGHGLVMR 240

Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               L  YI +    +V  +ED  TP   +Y  Y E    + KL  F +++
Sbjct: 241 AEWDLAKYIRQGKLEIV--LEDYETPEADIYAVYMERQNQSAKLTRFLDYL 289


>gi|297516999|ref|ZP_06935385.1| putative DNA-binding transcriptional regulator [Escherichia coli
           OP50]
          Length = 260

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITF 194
            H ++ +
Sbjct: 210 SHAIVRY 216


>gi|238023436|ref|YP_002907669.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
 gi|237880489|gb|ACR32818.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 297

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 6/244 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ LRVF V+ R+GS +     L +  ++ SR+IS LE ++G  LF R   G  L  QG
Sbjct: 7   NWNHLRVFLVLGRTGSLSQTGRLLGIDHATASRRISALEHDMGTPLFERDPTGYRLNAQG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +      V   +     +L    + PSG +RIAT   +    L           P I 
Sbjct: 67  RSIFEHIESVEASVLAAASQLAGGEIAPSGTVRIATMEGIASLYLSEQFVRLKRTTPGIV 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+  ++D+ ++   AD  +   KP    +L   K+     H Y +  Y      P S+
Sbjct: 127 IELVTSSRDVRVTHREADIFLGFFKP-PGKNLHAVKIGEFSCHLYGSQDYFARRGTPTSV 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H    + D + + ++   WL   +  +  P  S    +S LS M     G+G+ +
Sbjct: 186 AELPEHEFAGYIDELIQ-LDIVRWL---EEGVANPTYS-FHSSSMLSQMFAAAAGAGLVM 240

Query: 244 LPDY 247
           LP +
Sbjct: 241 LPAF 244


>gi|224823543|ref|ZP_03696652.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603998|gb|EEG10172.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 298

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 136/297 (45%), Gaps = 15/297 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +S LE ++   L  R  R L LT
Sbjct: 1   MKSTTEELLAFVRVVDAGSITAAAEQLGQTTSGVSRALSRLEGKLATTLLNRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   ++  + ++     +PSG+LR+        + +   +  F   YP
Sbjct: 61  EEGRLFLSHARGILGAIDEAEEQMAIRRERPSGRLRVNAASPFMLHAVVPLVGAFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L   ++ ID+     D AIR+   +Q SSL  R L    +   AAP YL+    P
Sbjct: 121 EIELELNTSDEIIDLLEQRTDVAIRI-GTLQDSSLHARPLGQFRLRLVAAPAYLERHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + EL +H LI F    P  +    W        G      L  +S  ++ Q  + G G
Sbjct: 180 QQVDELARHALIGFS--APSSLN--TWPLRRQESSGYVITPALSASSGETVRQLALAGQG 235

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSF-TVYFCYPEALKNTG---KLKAFRNFI 290
           IA L D++  ++     LV+++ +    ++  ++  Y    +NTG   ++  F +F+
Sbjct: 236 IACLSDFMTGEDRRRGALVQVLAEATIETWQAIHAVY---YRNTGLAARIGCFLDFL 289


>gi|50956505|gb|AAT90754.1| putative lysR-family transcriptional regulatory protein [Yersinia
           enterocolitica]
          Length = 303

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 113/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LETE+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + + L
Sbjct: 66  YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P      
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233
                       P  M +F+WL    RP     +  P     Q+        N   ++++
Sbjct: 181 ------------PSDMTNFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKAGAGIAYAP 240


>gi|295676185|ref|YP_003604709.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436028|gb|ADG15198.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 305

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 11/259 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +G+F+ AA QL  + S++SRQI  LE  +G +L  R  R + LT+ G++++
Sbjct: 13  MAMFARVVDAGNFSIAARQLGSTPSTVSRQIKRLEDSLGTRLLERSTRSIRLTDSGAQIY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++            +    P GK+ I+  I   ++++   + EFL  +PD+ + L+
Sbjct: 73  RFCRDMVGAASGAVDVAGQGEGDPRGKVSISAPISFARSVIHPLVPEFLRRWPDVDVHLV 132

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             + D+D      D  IRL R P     L  R+L  +     A+P YL     P   ++L
Sbjct: 133 FADHDVDPLRHDVDLVIRLTRSP--PPGLAARRLGAVKWLLCASPAYLAERGTPAEPRDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLP 245
            +H  +  G+ +    +D  W    D       +    + N   + +   + G GIA LP
Sbjct: 191 ARHACMYLGETV----DDNRWHFRRDSETQTVEVKGRYIANDASARLDAALHGLGIASLP 246

Query: 246 DYIVK---DNPNLVRIMED 261
           D++        ++VR++ D
Sbjct: 247 DFVAAQAISAGDIVRVLTD 265


>gi|264678709|ref|YP_003278616.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262209222|gb|ACY33320.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 313

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 136/294 (46%), Gaps = 23/294 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR  SFT AA ++ ++++++S+ + GLE  + ++L  R  R ++LTE+G +L  V 
Sbjct: 14  FAHIARHRSFTKAAAEMEVTRAALSQHLKGLEQHLNVRLLNRTTRDMSLTEEGQRLLDVL 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 +E    E+ E+  +P+G +R+ ++    + L++ ++ EFL  YP ++++L++D+
Sbjct: 74  QPALTAIERAVAEIGEAHAEPTGLIRMNSSRVAARLLIEPHMGEFLARYPKLRLELVMDD 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              +I  +  D  IRL + +    +       + M    +P Y +    P +  +L KHN
Sbjct: 134 GFSNIVAEGLDAGIRLGESLDEHMVAVPITPPLEMAIVGSPEYFERYGMPETPADLMKHN 193

Query: 191 LITFGDLIPKCMEDFNWLATVDR-----PIGEPRISCLQ------VNSYLSIMQYCVLGS 239
            + +          F    T+DR     P  E R    +       N   S++   + G 
Sbjct: 194 CLAY---------RFTSSGTIDRWSFTSPDEEKRTVVFEPQGNAVFNDDDSMLHGALQGV 244

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+    D  V+    + +LVR++     P    Y   P   +   K +A  +F+
Sbjct: 245 GLVQHIDLCVRRHLADGSLVRVLAAWCPPFPGFYLYVPSRSQMPAKTRALMDFL 298


>gi|167567323|ref|ZP_02360239.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 294

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 17/290 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  VAR G+ + AA +L +  +++ R+++ LETE+ ++L  R  R  TLT  
Sbjct: 2   FDWENLRHFLAVARVGTLSGAARELGVDHATVGRRVTMLETELQVRLVERFPRHCTLTGA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++  + S +       +  +Q    + +G + ++    L  N        F   YP I
Sbjct: 62  GRRIFEIASTMESGAFAIERAVQAERSQLTGTVVVSAPPVLVTNFFAAATTAFRERYPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L    + + +S   AD A+RL +P ++ +++ R++  +    YAA  Y      P  
Sbjct: 122 QLALSGQAQSVSLSRREADVAVRLVRPKEAGNVV-RRIGAMEFALYAARCY------PY- 173

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +QE  +   I + D     M    WL  V    G+  + C ++    S       G+GI 
Sbjct: 174 LQEPARWEFIGYDDQFDD-MPQQRWLKKV---AGKRPVVC-RLGDITSQFAATRAGAGIG 228

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFI 290
           +LP ++   + +LV +  DV    F   ++      LK    ++A  +FI
Sbjct: 229 MLPRFLPSASDDLVEL--DVDAEPFVRDIWLVVHRQLKAAPPIRAVMDFI 276


>gi|254250523|ref|ZP_04943842.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124879657|gb|EAY67013.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 330

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 126/247 (51%), Gaps = 18/247 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F   AR  SFT A ++L+++QS++SRQ+  LE ++ I+LF+RH R LTLT++G +
Sbjct: 17  DFLRGFECAARHLSFTRAGQELNVTQSAVSRQVKALEEQLRIELFHRHIRSLTLTDKGRE 76

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   S     LE+   +L  S  + S  + ++TT+      L   L  F   YPDI ++
Sbjct: 77  LYDAISFALSDLESVVGKLSSSVGQRS--ISLSTTVSFAALWLIPRLGSFRASYPDIDVR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  D+       A+R   P  S+     L + ++V +      +P  +    +  
Sbjct: 135 VSATSEIEDLKRKRLHLAVRYAGPYTSTDDTDVLFRERVVAV-----CSPSLMTAAGDAA 189

Query: 182 SIQ--ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236
           S+Q  +LDKH L+   D  P+    ++  + + + +G PR+     L  + Y  ++Q  V
Sbjct: 190 SMQPADLDKHVLLHLDD--PRGEWPWHGWSHLLKALGVPRLRPAGALHFSQYDQLVQAAV 247

Query: 237 LGSGIAL 243
            G GIA+
Sbjct: 248 DGHGIAI 254


>gi|254250527|ref|ZP_04943846.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124879661|gb|EAY67017.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 307

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 16/264 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  V R+GSF+ AA +L +  +++SR+I   E  +G +L +R  R L  + +
Sbjct: 2   LDLNDLALFVQVVRAGSFSEAARRLRMPANTLSRRIDQFEGHIGTRLLHRSTRKLAPSTE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G  L    +    ++   +IE Q +   +PSG +R+A    L + +    L EF   YP 
Sbjct: 62  GLALFERYAPALDRI--FEIERQHADGQEPSGTVRVAAMAGLFEVIKLEWLAEFYARYPR 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I  +LD+   D+  +  D A+R+      S  + R++    M   A+P YL+    P 
Sbjct: 120 ISIDFLLDDTPSDLIAERIDLALRIGIETGGSFRV-RRIAPDTMILAASPAYLERRGTPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           + +EL  H+ +T      + M    W   +  P G   IS      VN    ++Q C+ G
Sbjct: 179 TPRELADHDCLTVSSRQGRSM----W--RLQGPRGTQEISIDGRFSVNDMRVVVQACLAG 232

Query: 239 SGIALLPDYIVK---DNPNLVRIM 259
            GIAL+P  +     D   L R++
Sbjct: 233 LGIALVPQVLAAAAIDEGKLARVL 256


>gi|317494709|ref|ZP_07953121.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917311|gb|EFV38658.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 310

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 120/256 (46%), Gaps = 7/256 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  V   GSF+  A    ++ SSISRQ+  +E  +  +L YRH R +T TE G  L 
Sbjct: 12  LRLFVAVIDYGSFSAVARNEGIAPSSISRQMQQMEQALNQQLLYRHTRAVTATESGRLLA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +LE  +  LQE  ++P+G +RI   +  G+  +   + E    +P + ++L+
Sbjct: 72  TYARRVLEQLEEAEQALQEKKLEPAGLVRINAPVVFGRLHIAPYIPELCHKHPKLCVELV 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  ID   D +D   R+   +  S+L  R L   +    A+P YL+    P S +EL+
Sbjct: 132 QTDNFIDPMQDASDLLFRI-GILSDSNLQGRVLAQQNYRIAASPEYLRRFGVPSSPEELE 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + F          F      ++ +       L  N+  S++   + G GI + P +
Sbjct: 191 HHNCLVFKGFAGAQRWFFQ---CKNQWVPYNLHGSLTGNNADSLLDAAIQGLGIVVFPTW 247

Query: 248 IVKD---NPNLVRIME 260
           ++ D   +  LV +ME
Sbjct: 248 LLGDALKDGRLVSLME 263


>gi|170697513|ref|ZP_02888603.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137536|gb|EDT05774.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 291

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 123/269 (45%), Gaps = 12/269 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++  F  AA+ L +  S++SR+IS LE  +G++L +R  R + LTE G  
Sbjct: 5   NDMALFVEVVKARGFRSAAQTLGMPNSTLSRRISALEKAIGLRLLHRTTRRIELTEAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      +L     +P+G LR +  +D     L   + EF   YP +   
Sbjct: 65  YFERCKRIVDEARLAHEQLGGLLAEPAGVLRASFPVDFAVTYLAPLIVEFANRYPKLTFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ +D+  +  D AIR+  P + S L+ R+L T+  + YA+P YL    EP   ++
Sbjct: 125 FELTSRRVDLVSEPFDVAIRI-GPSEDSQLVARRLATLRNYLYASPGYLARAGEPREPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  +          +  +W L    R +     S   VNS   + +   L +GI +L
Sbjct: 184 LARHACLGL-------QKSGSWTLHDGTRSVAVAVSSRFAVNSVGMLRRLATLDAGIIVL 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVY 270
            + I+ D+     L R+M +       VY
Sbjct: 237 SEEILADDVAAGRLRRVMPEWEGEPIPVY 265


>gi|78061343|ref|YP_371251.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969228|gb|ABB10607.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 291

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 12/269 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++  F  AAE L +  S++SR+I  LE  +G++L +R  R + LTE G  
Sbjct: 5   NDMALFVEVVKAKGFRSAAETLGMPNSTLSRRIGALEKAIGLRLLHRTTRRIELTEAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      +L     +P+G LR +  +D    +L   L EF   +P +   
Sbjct: 65  YFERCKRIVDEARLAHEQLGGLLAEPTGVLRASFPVDFAVVILAPLLVEFANRHPKLSFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ +D+  +  D AIR+  P + S LI R++ T+  + YA+P YL    EP   ++
Sbjct: 125 YELTSRRVDLVSEPFDVAIRM-GPSEDSQLIARRIATLRNYLYASPGYLARAGEPQQPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  +             +W L    R +  P  S    NS   + +   L +GI +L
Sbjct: 184 LATHACLGL-------QRSGSWTLHDGTRSVAVPVSSRFGANSVGMLRRLATLDAGIIVL 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVY 270
            + IV D+     L R+M +       VY
Sbjct: 237 SEAIVADDLAAGRLRRVMPEWEGEPIPVY 265


>gi|161616662|ref|YP_001590627.1| hypothetical protein SPAB_04479 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194448392|ref|YP_002047636.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197265402|ref|ZP_03165476.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205357602|ref|ZP_02571927.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205359036|ref|ZP_02666698.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|161366026|gb|ABX69794.1| hypothetical protein SPAB_04479 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406696|gb|ACF66915.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197243657|gb|EDY26277.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205330685|gb|EDZ17449.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205338714|gb|EDZ25478.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|321226658|gb|EFX51708.1| LysR family transcriptional regulator YhjC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 300

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 8   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 68  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 187 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI   P   V++      L+ I+         V   YP
Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275


>gi|116250635|ref|YP_766473.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255283|emb|CAK06358.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 283

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 117/247 (47%), Gaps = 19/247 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  L++F  +AR G+   AA  L L+Q ++ R++  LET +G  LF R   G  LT++
Sbjct: 1   MEWSDLKLFLAIARFGTLGAAARSLGLTQPTMGRRLRALETSLGQMLFQRTTDGFVLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ +      +  +    +  L   S +  G LR++++   G ++L   L EF  ++P +
Sbjct: 61  GAAVFAGAERIEEEALAVERVLAGGSRQLDGFLRLSSSDWFGAHVLSPVLAEFSQVHPKV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY---AAPHYLKNCRE 179
            ++L+ D++ + +S   AD   R+ +P   + +I RKL+ I    Y    APH       
Sbjct: 121 VVELLTDSRFLSLSRREADLVFRI-QPFTEAEVISRKLIHIEYGLYISRGAPHPEAGDGA 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
              +  +D+     FGD     M D  WL  +      PR    ++ NS       C  G
Sbjct: 180 GTRLVTMDE----AFGD-----MPDVGWLQRL-----LPRAGIVMRSNSRDVQAALCANG 225

Query: 239 SGIALLP 245
           +G+A+LP
Sbjct: 226 AGLAVLP 232


>gi|254248789|ref|ZP_04942109.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875290|gb|EAY65280.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 310

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 124/277 (44%), Gaps = 17/277 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +G  +  A +L ++  + S+Q++ LE  + ++LF R    + LT +G +L 
Sbjct: 7   LTVFVRVAVAGGISAGARELAMTPQAASKQVAALEALLNVRLFQRSTHRIALTVEGERLL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +LET    L +  V   G LR+A    L +  L   L EF   +P +  +L+
Sbjct: 67  AQCRGAVGELETALRMLDDDRVHAVGTLRVAAPYSLARRFLAPLLGEFCDQHPGMTAELV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   DI     D A+R    +  S LI R++  + +   AAP YL+    P +I  L 
Sbjct: 127 VSDDMADIVEQRIDLAVRT-GDLPDSGLIARRIAELQLVVCAAPAYLRRHGAPQTIDALR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSGI 241
            H    F  L P+  + F W   VD      R+   Q++ +++       +   + G+ I
Sbjct: 186 DHRCTAF--LYPRTGKPFPWEFLVD-----GRVDTRQIDPFIATNDIDAELDTVLSGAAI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
                Y V ++     LV ++   +T  + +Y C P+
Sbjct: 239 GQFFGYSVHEHVREGRLVPLLTRHVTCRYGLYLCMPQ 275


>gi|261213016|ref|ZP_05927300.1| transcriptional regulator LysR family [Vibrio sp. RC341]
 gi|260838081|gb|EEX64758.1| transcriptional regulator LysR family [Vibrio sp. RC341]
          Length = 299

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L +HN + +        + +F     N++  V              ++  ++ +  + G 
Sbjct: 183 LARHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA +P  +V     N  LV I  + +     +Y  YP
Sbjct: 235 GIAYVPRCLVYHDFRNGELVDIFPEQVGKKLGIYAVYP 272


>gi|149188654|ref|ZP_01866946.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148837564|gb|EDL54509.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 316

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 111/224 (49%), Gaps = 15/224 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR+F  V + GSF  AA   ++  SS+S+QI  LE  +G++L  R  R   LT  G  +
Sbjct: 6   QLRLFVDVVQQGSFAKAATLNNMDNSSLSKQIKKLEETLGVQLLNRSTRSFFLTSAGEDI 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              T  +   L+  +        +P G +RI + + LGQ  +Q  +  F+  YP++Q+ L
Sbjct: 66  LAETHVLLESLDNIKGIADSYQSEPKGVIRIVSAVFLGQQYVQPVISCFMRKYPNVQVTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++  DI  D+ D AIR+ K +  S+LI +KL   +    A+  +LK    P + +EL
Sbjct: 126 HLDDRKTDIIADHFDLAIRMGK-LTDSNLIAKKLAKTNFAIVASKEFLKQHGTPQTPEEL 184

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
                + +  GD+   C++ F    T          SC ++ SY
Sbjct: 185 ITLPAVIYNNGDV---CLDSFKMSRTP---------SCQEMTSY 216


>gi|332084038|gb|EGI89245.1| hypothetical protein SD15574_5128 [Shigella dysenteriae 155-74]
          Length = 203

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 67  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIRTSA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITF 194
            H ++ +
Sbjct: 186 SHAIVRY 192


>gi|86137229|ref|ZP_01055807.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85826553|gb|EAQ46750.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 292

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 10/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHIEAIEARLGVKLFQRHARGYTPTESG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+    + SG+L + T++    +LL   L EF  ++P + 
Sbjct: 63  QDLLRVAQATDDQFSQLVGRLKGQGDEVSGEL-VVTSLSSMSHLLVPVLTEFQQMHPGLV 121

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I+ +   +   +    A  A+R    P Q  +++Q       +  +A+  Y+        
Sbjct: 122 IRYLTGERLFRLEYGEAHVALRAGNAPDQPDNVVQ-PFARQRIGLFASQSYVDRHGVLEG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           I +L  H  +  G         FN WL    R          + +  +++ +  + G+GI
Sbjct: 181 IDDLKNHQFV--GTDNENSRAPFNKWL----REHTNEETIIFRCSDGVAMQEAIMAGAGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +  +     P+LV++ME       +++      L  T K+++F +F+  +++ W+
Sbjct: 235 GFMSTWEASRRPDLVKMMEPREEWEGSLWLVTHVDLHRTNKVQSFLSFLKERSKAWQ 291


>gi|103485581|ref|YP_615142.1| LysR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98975658|gb|ABF51809.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis
           RB2256]
          Length = 300

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 127/291 (43%), Gaps = 23/291 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RV   V  +GS +  +  L     S+SR+++ LE  +G  L  R +R + LT+ G  
Sbjct: 5   DAMRVLLAVVDAGSLSAGSRALGSPLPSVSRKVAELERYLGTNLLVRTSRNIQLTDAGRD 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   LE T+         P G+L I   I+ G   +      F+  YP++ + 
Sbjct: 65  YVEAARRIIADLEETERRASGEYQTPRGELSITMPIEFGVRHVIPIALAFIDEYPEVTLN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI  ++ + +  ++ D AIRL   +  S+L   K     + A A+P YL     P S +E
Sbjct: 125 LITSDRLVHMVDEHVDVAIRLGH-LPDSALFAVKAGEFRLIACASPAYLDRRGAPTSPRE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYCVLG 238
           L  H+ I FG L         W   +D   GE       PR+S   VNS    +   + G
Sbjct: 184 LSGHDGIMFGPL------PMFWGYRID---GEDVMCTPRPRVS---VNSAAGNLAAVLSG 231

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+A L DY V +   +  LVRI+ D       V+  YP       K++AF
Sbjct: 232 VGVARLFDYQVSEHLQSGALVRILPDADGEPRPVHIVYPRQGLLPLKVRAF 282


>gi|107028381|ref|YP_625476.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686377|ref|YP_839624.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897545|gb|ABF80503.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652092|gb|ABK12731.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 330

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 126/247 (51%), Gaps = 18/247 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F   AR  SFT A ++L+++QS++SRQ+  LE ++ I+LF+RH R LTLT++G +
Sbjct: 17  DFLRGFECAARHLSFTRAGQELNVTQSAVSRQVKALEEQLRIELFHRHIRSLTLTDKGRE 76

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   S     LE+   +L  S  + S  + ++TT+      L   L  F   YPDI ++
Sbjct: 77  LYDAISFALSDLESVVGKLSSSVGQRS--ISLSTTVSFAALWLIPRLGSFRASYPDIDVR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  D+       A+R   P  S+     L + ++V +      +P  +    +  
Sbjct: 135 VSATSEIEDLKRKRLHLAVRYAGPYTSTDDTDVLFRERVVAV-----CSPSLMTAAGDAA 189

Query: 182 SIQ--ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236
           S+Q  +LDKH L+   D  P+    ++  + + + +G PR+     L  + Y  ++Q  V
Sbjct: 190 SMQPADLDKHVLLHLDD--PRGEWPWHGWSHLLKALGVPRLRPAGALHFSQYDQLVQAAV 247

Query: 237 LGSGIAL 243
            G GIA+
Sbjct: 248 DGHGIAI 254


>gi|304410979|ref|ZP_07392595.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307301898|ref|ZP_07581656.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304350514|gb|EFM14916.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306913936|gb|EFN44357.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 330

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 107/187 (57%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V + GSF  AA+ L L +SS+S++I+ LE ++G++L  R  R L LT+ G++L 
Sbjct: 15  LYIFRCVTQLGSFQAAADALQLPRSSVSKKIAQLEHQLGLRLLQRSTRQLNLTDSGTELL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +T  +   L  T    +++  KPSG+++I+++  LGQ  L   L +   L+P+I I + 
Sbjct: 75  AITDSLTELLSNTAKLTEQAQAKPSGRVKISSSTILGQRYLLPLLPKLKQLFPEIVIDIN 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+     D A+R+ + +  SSL+ R++ T     +A+P YLK   +     +L 
Sbjct: 135 LDDRVVDLIELGIDIALRVGE-LPDSSLVARRIGTKSWACFASPAYLKQAAKLEVPSDLA 193

Query: 188 KHNLITF 194
            H  + F
Sbjct: 194 AHQCLIF 200


>gi|229588511|ref|YP_002870630.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360377|emb|CAY47234.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 322

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAEAGSFTAAAVQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ T   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILAYVEEAEAEASDAHARPAGQLKVHTMTGIGQHFVIDAIARYRRTHPDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L N+  D+  +  D +I L   +  S  + ++L   +  A A+P Y+K         +L
Sbjct: 126 TLANRVPDLLDEGYDVSIVLASELPDSGFVSQRLGITYSIACASPDYVKAKGCAHRPHDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+   ++   W  T + P G+  +    S   VNS  ++      G GI 
Sbjct: 186 LNHACLR---LVSPVIQLDKW--TFNGPEGQESVAINTSPFLVNSADAMKTAITSGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP Y   +   N  LVR+M +  +    +Y  YP       K+K +  ++
Sbjct: 241 LLPVYAAIEGLRNGTLVRVMPNYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|213426510|ref|ZP_03359260.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213612647|ref|ZP_03370473.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213850452|ref|ZP_03381350.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289824321|ref|ZP_06543914.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 299

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 7   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 67  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYPGIALELC 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 127 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 186 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI   P   V++      L+ I+         V   YP
Sbjct: 236 LGIIQTPRIAVREALRAGALIEILPQYRAAPLPVTLHYP 274


>gi|167562996|ref|ZP_02355912.1| transcriptional regulator [Burkholderia oklahomensis EO147]
          Length = 313

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP++ + L
Sbjct: 66  LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYQQRYPEVHVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++N   P   Q+L
Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGVTFSVVCASRGYIENHGAPQRPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             H  +  G + P    D  W   +  P GE  ++      +VN   ++      G GI 
Sbjct: 186 ANH--VCLGMVAPGLYWD-EW--KLMGPRGEESVTLAPPPFRVNVAEALAAGIREGMGIG 240

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y       N + VR+M +  +    +Y  Y           A R ++  K R W
Sbjct: 241 VLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287


>gi|126439144|ref|YP_001058745.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126218637|gb|ABN82143.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 301

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 140/302 (46%), Gaps = 14/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET++G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLETQLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRLRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+  P+      W     RP      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGEQ-PR----VEWRFDGPRPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
              + V   P+L      R++ +  + +  ++  YP       +++ F +++ ++  R W
Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 296

Query: 298 KF 299
           ++
Sbjct: 297 RW 298


>gi|116050478|ref|YP_790703.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218891487|ref|YP_002440354.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254240965|ref|ZP_04934287.1| hypothetical protein PA2G_01645 [Pseudomonas aeruginosa 2192]
 gi|115585699|gb|ABJ11714.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126194343|gb|EAZ58406.1| hypothetical protein PA2G_01645 [Pseudomonas aeruginosa 2192]
 gi|218771713|emb|CAW27487.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 303

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 140/290 (48%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  +   G+F  AA+ L L ++S+++ I  LE  +G++L  R  R ++LT  G 
Sbjct: 4   FQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +         P G+LR+     LG+  +   L EF   YP++++
Sbjct: 64  AYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPELEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL  +++ +D+  + ADC +R+ + +  SSL+ R L  +     A+  YL+    P  + 
Sbjct: 124 QLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPRQLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  + +    P     F++  +VD R    P  S + VN+  + +  C  G G+  
Sbjct: 183 ELGGHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P Y V     + +L +++ + + PS  ++  YP   + + +++ F +++
Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWL 290


>gi|16766893|ref|NP_462508.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16422169|gb|AAL22467.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|261248760|emb|CBG26610.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267995844|gb|ACY90729.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160146|emb|CBW19666.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914631|dbj|BAJ38605.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|323131967|gb|ADX19397.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990458|gb|AEF09441.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 299

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 7   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 67  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 127 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 186 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI   P   V++      L+ I+         V   YP
Sbjct: 236 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 274


>gi|330809357|ref|YP_004353819.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377465|gb|AEA68815.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 313

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 13/237 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SF+ AAE+LH++Q++ISRQI GLE ++G+KLF R  R + LT QG +L RV 
Sbjct: 17  FEAAARLESFSKAAEELHITQAAISRQIRGLEEDLGLKLFCRRNRAVFLTPQGRELGRVV 76

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL--LQGNLKEFLLLYPDIQIQLIL 128
           S     +  + + L++S     GK R+     L +    L   L  F   YP+I+IQ+  
Sbjct: 77  SNALQSISASAVSLRQS----PGKNRVVLLCQLCEAFYWLMPRLSTFHQRYPEIEIQVAT 132

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY--AAPHYLKNCREPLSIQEL 186
               +    ++ D A+   +     S +   + T     +   +PHYL+   + L +++L
Sbjct: 133 STGPLTEFNEHFDVAL---QSTGRPSGVHGLMFTAADEVFPVCSPHYLRT-HKALQVRDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             H L+ +    P  M+   W     +         +  +SY  ++Q  V G GIAL
Sbjct: 189 KSHTLLHYHATPPHWMQWGAWFQAFGQSFDNSSEGSV-FDSYPLMLQAAVEGHGIAL 244


>gi|324006162|gb|EGB75381.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
          Length = 299

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 128/288 (44%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  + +I IQL 
Sbjct: 69  SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHSEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  +K+   L+R++ D  TP    Y  Y    ++ G   AF  FI
Sbjct: 247 DQVERAIKEK-KLIRVL-DKFTPDLPGYHLYYPHRRHAG--SAFSLFI 290


>gi|194364236|ref|YP_002026846.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347040|gb|ACF50163.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 309

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VA  GS T AAE L +S++ +SR ++ +E  +G +L +R  R ++LT  G    
Sbjct: 7   MTVFVEVAERGSLTAAAEVLDMSRAMVSRYLAEVEGWLGARLLHRTTRRVSLTGPGEAAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E  + EL     +P G LR+  ++  GQ+ L   +  F+  +P  +I+L+
Sbjct: 67  ARFRQMLAIGEELRGELASDDPEPHGTLRVTASVSFGQSHLARAVAGFVARHPAARIELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D A+R+ + I   SLI R+L T      A P YL+    P + + L 
Sbjct: 127 LVDRTVNLVEERVDLAVRIARQID-PSLIARRLATCRSVLCATPSYLQARGTPTAPEHLA 185

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN +T    + K +    W L    R +       +  N    +++    G+GIA+LP 
Sbjct: 186 AHNCLTH-HYVGKSL----WQLHREGRSLSVAVGGNISANEASLLLEAVRAGAGIAMLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y V     +  L+ ++ +       ++  Y    +    ++ F +F+
Sbjct: 241 YQVAPFLRSGELIELLPEFSLDELGIHAVYASRRQQPAIMRRFLDFL 287


>gi|149917748|ref|ZP_01906244.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149821530|gb|EDM80930.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 299

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 120/284 (42%), Gaps = 6/284 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW++ R F V A  GSF+ AA  L  +Q ++ RQ++ LE E+G+ LF R    L LT
Sbjct: 6   VNFDWNRARAFLVTASEGSFSAAARALGTTQPTVGRQVAALEEELGVTLFERLGTRLELT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L      +        +     ++   G + I  +      LL   L      YP
Sbjct: 66  ATGVELVEHVRSMGEAATRMSLVATGQALSVEGTVSITASEATAAFLLPPVLTRLRTEYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I ++  N+  D+    AD AIR  +  Q   LI RKL       YA+P Y++     
Sbjct: 126 GIEIDIVASNQIRDLRRREADIAIRNTRTGQ-PELIVRKLRDTEGAFYASPDYIERAGPF 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S ++  +  +  F D     ++         RP   P    +    +L   + C  G G
Sbjct: 185 DSAEDFHRAEIFAFDDSA-MMIDGLRAFGLEVRPEQFP----IMTGDHLVQWELCKRGVG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           I ++   +    P + R+  DV T    +Y      L+ + +++
Sbjct: 240 ICIMMREVGDAEPGVRRVFPDVPTIPVPIYLVCHRELRTSRRIR 283


>gi|325168438|ref|YP_004280228.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064161|gb|ADY67850.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 287

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 126/273 (46%), Gaps = 15/273 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  +++F  +ARSG+   AA  LH S  ++ R++  LE  +G  LF R A GL LTE+
Sbjct: 1   MEWSDVKIFLAIARSGTLGSAARALHTSHPTVGRRLRALEEAIGHTLFQRTADGLVLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           G  +  +  ++       +  L  QE ++K  G LRI++    G  +L   L +F   YP
Sbjct: 61  GHGIIALAEQMEEGALAMERRLAGQEQNLK--GNLRISSADWFGAYVLPPILADFSKAYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++++   +  +++   AD A R+  P  ++ +IQR+L  +    Y A    +   +P
Sbjct: 119 NVDVEILTGTRLFNLAQREADVAFRI-VPFDTADVIQRRLFRLEYDVYIA----EESPDP 173

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +     LIT  D       D  WL T   P   P    L+ N+     + C  G G
Sbjct: 174 -KYGDGTGFRLITH-DTSTGQFPDIAWL-TESFPNARP---VLRSNNRNVQARMCKQGIG 227

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           IA+LP  +    P + R+      P+  ++  Y
Sbjct: 228 IAVLPRVVGNQIPGIRRLELPKPPPARDIWMGY 260


>gi|296159034|ref|ZP_06841861.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295890595|gb|EFG70386.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 312

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 137/305 (44%), Gaps = 15/305 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++RVF  V  SG+FT AA  L+ S  +ISR ++ LET +  +L  R  R + LT  G  
Sbjct: 5   NQMRVFARVVESGTFTAAANTLNTSPGAISRAVAELETRLRTRLLNRSTRKVALTPAGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   ++   +E  + E  ++  +P GKLR+ +   +GQ  +   +KE+   YP++ ++
Sbjct: 65  YLQRCKQILADVEMAEEEASDAQSRPMGKLRVHSFTGIGQYYVLPAIKEYRSRYPNVSVE 124

Query: 126 LILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L  +  ++     D A +     +  S L+   L +      A+P Y+     P S +
Sbjct: 125 LTLSQRAPELYKGSTDIAVVATSSALPDSDLVSHLLGSSFSVLCASPDYVHQRGMPDSPE 184

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
           +L +H  LI      P     + WL   D      ++S  +++N+  +I        GI 
Sbjct: 185 QLARHECLILHSPAFPA----YEWLLESDNGSESMKVSGAVELNTPEAIGMAARASMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-----FLKA 294
           +LP Y   +   N  LVR++         +Y  +P       ++K +  F+      + A
Sbjct: 241 VLPIYTALEGLSNHTLVRVLPGYTLQKMNIYALHPSRRYTDARIKTWVEFLRQHLPTVTA 300

Query: 295 RDWKF 299
           RD + 
Sbjct: 301 RDAQL 305


>gi|229489458|ref|ZP_04383321.1| LysR-family transcriptional regulator [Rhodococcus erythropolis
           SK121]
 gi|229323555|gb|EEN89313.1| LysR-family transcriptional regulator [Rhodococcus erythropolis
           SK121]
          Length = 307

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 124/264 (46%), Gaps = 26/264 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +LRV   VAR GS T AA+ L  +Q SIS  +  LE+EVG+ LF R  RGL LT+ 
Sbjct: 2   LDLIRLRVLVAVAREGSVTAAADSLGYAQPSISHHLRQLESEVGVPLFQRAGRGLRLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L R  +E+   ++    E+Q  +   +G+LR+A       +L+   +  F   YPD+
Sbjct: 62  GAVLVRRATEILGHVDAAVAEVQTYAGLRTGRLRLAAFPSALASLIPQAMAAFTSQYPDV 121

Query: 123 QIQLI----------LDNKDIDISMDYA--DCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
            I L+          L N D+D+++ +A  D      K +  ++L++  L          
Sbjct: 122 SISLVDAEPPKALALLRNNDVDVAVVFAHEDTPEVGLKHVAQTTLLEDPL---------- 171

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
            + + + R   +  E+  +   T+    P C    + L   +R    PRI   + + Y++
Sbjct: 172 -YLITSARNADAANEITDYAGETWIAGCPSCRA--HLLTACNRAGFIPRIE-FETDDYVA 227

Query: 231 IMQYCVLGSGIALLPDYIVKDNPN 254
           +      GSG++ LP   ++ + N
Sbjct: 228 VQALVASGSGVSTLPALALQAHQN 251


>gi|157144708|ref|YP_001452027.1| hypothetical protein CKO_00434 [Citrobacter koseri ATCC BAA-895]
 gi|157081913|gb|ABV11591.1| hypothetical protein CKO_00434 [Citrobacter koseri ATCC BAA-895]
          Length = 300

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 135/274 (49%), Gaps = 10/274 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  +   GSFT AAE L LS+  +SR+++ LE +V  +L  R+ R L++T+ G  
Sbjct: 4   EDIRIFVTIVNMGSFTAAAEHLSLSKQFVSRRMAALEKKVSARLLVRNTRKLSVTDTGQA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++   +  +     K +G  RI+  +  G   L   + EF   +P++ + 
Sbjct: 64  FFHHARRILEEVHEAEQVISARQQKLAGSFRISLPMTYGIRRLAPLIVEFQAAHPELTVH 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + ++++ +D+  +  D  +R+   +  S+LI R L  + M   A+P YL+    PL+  E
Sbjct: 124 IDMNDRYVDVVGEGYDMVLRIGN-LMDSTLIARCLGKLPMVICASPDYLRLHGTPLAPSE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H+ + +G         F W L   + P        L  N+   I +    G+GIALL
Sbjct: 183 LAQHSCLLYGR-----EGQFGWKLTEENSPNTYAVRGNLSSNNGDVIREAAEAGAGIALL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           P +IV+D+     LV+I+ D   P  T+   YP+
Sbjct: 238 PLFIVEDSLQQGALVQILSDYSPPPLTISALYPK 271


>gi|33592370|ref|NP_880014.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33572015|emb|CAE41538.1| probable LysR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332381786|gb|AEE66633.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 303

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 124/272 (45%), Gaps = 14/272 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GS + AA  L +S++ +SR ++ LE  VG++L +R  R L+LT  GS+  
Sbjct: 7   MQVFVEVADRGSLSAAAMHLGMSRAMVSRYLAELEAWVGVRLLHRTTRRLSLTPAGSETL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +  +     +P G LR+   +  G   L   + EF+  +P   I L+
Sbjct: 67  PRCRRMLEMVGDMREAVAAPDAEPRGLLRVTAAMSFGGAQLAEAVAEFVRRHPAASIDLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D A+R+   +   +LI R+L         AP YL+    P   ++L 
Sbjct: 127 LVDRAVNLVEERVDLAVRITNDLD-PNLIGRRLADCRSVVCVAPQYLQQHGAPARAEDLS 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            HN +T   FG    + +  F        P+  P    +  N    +M+  + G+GI +L
Sbjct: 186 LHNCLTHSYFG----RSLWRFE---RAGEPVEVPVGGNITANETDVLMRAALAGAGIVML 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           P Y+        +L  ++ D   P   ++  Y
Sbjct: 239 PTYLAAGQIAAGSLRLLLPDCAPPVLGIHGVY 270


>gi|145299300|ref|YP_001142141.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852072|gb|ABO90393.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 301

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 132/260 (50%), Gaps = 7/260 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GS T AA+ L ++ S++S+ IS LE+ +G+ L +R AR L LTE G  + + 
Sbjct: 9   IFAAVVEAGSMTGAAKALGMTPSAVSQHISQLESLLGLTLLHRSARRLNLTEAGEVVWQG 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L  T++ L E      G++RI   + +    L   L   L  +P + IQ+I D
Sbjct: 69  CQSLQQTLNQTELRLSEVRDSLLGEVRITAPVGMAGQPLARALSPLLQAHPGLCIQIIAD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+  +  D A+R+   +  SSL+ RKL    M   A+P YL     P S  +L +H
Sbjct: 129 DEKRDLIAERIDVALRVGT-LSDSSLVARKLGQTRMLLCASPAYLARKGTPRSPADLLEH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + +   D++   +  F+      +   +PR+ C   N+ L + Q+ + G G++L P+  +
Sbjct: 188 DWLA-ADMLSGGLTFFDDKGQGHKVKPKPRVVC---NNVLPLRQFTLAGQGVSLQPEGEI 243

Query: 250 KDNPNLVRIMEDVITPSFTV 269
            ++    R++E  + P F V
Sbjct: 244 AEDLAQGRLLE--LLPGFRV 261


>gi|91778485|ref|YP_553693.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691145|gb|ABE34343.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 303

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 140/296 (47%), Gaps = 16/296 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +A S S T AA +L LS +++S+ ++ +E+  G+ L  R  R ++LT +G  
Sbjct: 8   DDLAFFSTLAASASLTAAARELGLSTAAVSKHLAQMESRAGVSLVNRTTRRMSLTPEGEL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  + + ++     L  S   P G LR+  T+  G++ +   +  F+  +P++ +Q
Sbjct: 68  YLTRARRILNDMDDLAQLLGGSQAAPKGLLRVNATLGFGRSHVAPLISTFVRRFPEVDVQ 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L       S D  D  +R  +P   + +I R++ +      A+P YL   R P S  E
Sbjct: 128 LQLSVDPPPFSDDAFDVCVRFGEP-PDARVIARRVASNRRLLCASPRYLAQRRTPRSPAE 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238
           L +HN I     I +  + +  W  T  R   E +   ++V   L+       +++ + G
Sbjct: 187 LAQHNCIG----IRQGGDGYGLWRLTSGRGAAE-KTETVRVRGNLTTNDGEIAVKWALDG 241

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GI +  ++ + D   +  LV I+ D  TP   +Y  YP+ L+ T ++KAF + + 
Sbjct: 242 HGILMRAEWDIADYLADGRLVHILPDYRTPGADIYAVYPQQLQMTARVKAFVDMLI 297


>gi|16762695|ref|NP_458312.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144182|ref|NP_807524.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213584054|ref|ZP_03365880.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|25319792|pir||AF0986 hypothetical lysR-family transcription regulator STY4196 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16505001|emb|CAD08018.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139819|gb|AAO71384.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 300

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 8   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 68  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYPGIALELC 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 187 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI   P   V++      L+ I+         V   YP
Sbjct: 237 LGIIQTPRIAVREALRAGALIEILPQYRAAPLPVTLHYP 275


>gi|221639383|ref|YP_002525645.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|221160164|gb|ACM01144.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
          Length = 297

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 129/271 (47%), Gaps = 12/271 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  VAR+ S + A   L L  +++ R+I+ LE  +G+ LF +  +G  LTE 
Sbjct: 1   MDWDDLRIFLGVARAESLSGAGRGLRLDPATVGRRIARLEEALGVPLFAKSPQGYALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L          +     +LQ  +   SG++RI         LL   L +     P +
Sbjct: 61  GQRLLAHAERAEQAVGEAAEDLQ-GAAGLSGQIRIGAPDGCANYLLPQVLAQICTDNPGL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q++   +  ++S   AD AI + +P ++  L  +KL    +H  A+  YL       +
Sbjct: 120 EVQIVALPRVFNLSKREADLAIGVSRP-EAGRLRVQKLADYRLHLAASAEYLSRHPPIRA 178

Query: 183 IQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++L  H L+ +   IP  +  ++ ++L      IG   +     NS    + +   G+G
Sbjct: 179 LEDLKAHQLVGY---IPDMIFDKELDYLTG----IGSGSVP-FASNSVSVQLNWLRAGAG 230

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271
           + ++ D+ +   P LV+I+ + ++ S + + 
Sbjct: 231 VGIVHDFAMPSAPELVKILPEALSLSRSFWL 261


>gi|78062085|ref|YP_371993.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969970|gb|ABB11349.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 303

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 135/298 (45%), Gaps = 21/298 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT +G+  +
Sbjct: 7   MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVALTAEGATYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +   +++   P G +R+        N +   L  F   YPD+++ + 
Sbjct: 67  ERCMRLLADLDDAETLFEDAGTTPRGAIRVDLPERFALNQVIPALPGFHARYPDLRVVIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R+   +  +SL+ R++  +     AAP YL+    P S  EL 
Sbjct: 127 TTDRFVDLVADGIDCAVRV-GAMSDTSLVARRIGELAQINCAAPAYLERHGTPRSPDELP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  +  G    +   + +W    D   G+       S + VNS  + +  C+ G G+  
Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDSGQLHAVKMRSVVSVNSSQAYLACCLAGLGLIQ 242

Query: 244 LP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            P      ++ D  +LV ++ +       V   +P     TG+  A R  IF+   DW
Sbjct: 243 APREGLGPLLADG-SLVEVLPEWNAEPLPVSVVFP-----TGRHLAPRVRIFV---DW 291


>gi|89071934|ref|ZP_01158530.1| putative transcriptional regulator (LysR family protein)
           [Photobacterium sp. SKA34]
 gi|89052035|gb|EAR57486.1| putative transcriptional regulator (LysR family protein)
           [Photobacterium sp. SKA34]
          Length = 297

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 131/281 (46%), Gaps = 22/281 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +  D LR F VVAR GSF  AA  L +  S++SR+I  LE ++ ++L  R A  +TLT  
Sbjct: 5   YSLDDLRCFCVVARHGSFKAAATSLGMPLSTLSRRIRQLEDDLQLRLLNRDAHRVTLTST 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  + ++ ++ +L     EL      P GK+RI+  I+ G   L+    +FL+ YP+I
Sbjct: 65  GEQYFQRSAILFDELHDIDQELHRDKYYPQGKIRISAPINAGSKYLRKIFYDFLIQYPEI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKNCREPL 181
           Q++L     +ID+  +  D A R+   +     I + +  IH    + P Y +     P 
Sbjct: 125 QLELNFSGANIDVEAEGIDMAFRV-GTLSDEDWIAKPIKDIHFIFCSHPDYDVSTLSNP- 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISC-LQVNSYLSIMQYC 235
             +EL  H LI        C     W   ++   GE     P+ +  L+V+    +++  
Sbjct: 183 --EELHDHPLII-------CRPIRVW-EMINHESGEKYDYSPKENVRLEVDEGFMMLEAI 232

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
             G GI  +P Y+      N  + R++    + + T++  Y
Sbjct: 233 KTGIGIGYVPSYLAYPMIANGEIKRVLPAWSSEARTMFMLY 273


>gi|115351408|ref|YP_773247.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115281396|gb|ABI86913.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 301

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 138/291 (47%), Gaps = 10/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE+++G++L +R  R  TLT+ G
Sbjct: 5   DLPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESQLGVRLLHRTTRQQTLTDDG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  + +      G LR+    +LG+  +   +  F   +P++ 
Sbjct: 65  AQFHAQVLRILAEVERAETLMSDRRGTVGGVLRVTAPGELGRLRIAPLIAAFQRRHPELI 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P Y+     P   
Sbjct: 125 VQLMLTDAIVDLLAHDIDVAVRI-GSLADSTMIARELAPNHRVLCASPSYVAAHGLPAEP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I  GD  P+    F+    TV   +     + L  N   +     + G+GIA
Sbjct: 184 AELRAHRCIVMGDQ-PRAEWRFDGAHGTVAVEV----TAALLTNDGGAARTLALEGAGIA 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   + V    D   LVR++     P+  ++  YP       +++AF +F+
Sbjct: 239 LKSIWDVGADLDAGRLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVDFL 289


>gi|294085619|ref|YP_003552379.1| LysR family transcriptional regulator [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665194|gb|ADE40295.1| transcriptional regulatory protein, LysR family [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 306

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 141/303 (46%), Gaps = 23/303 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++R F  V  +GS T AAE+L ++ S++SR++  LE  +G  L  R  R + L E G +
Sbjct: 5   EEIRAFVTVVETGSLTQAAERLGIAVSAVSRRLKDLELRLGAPLIQRSTRRMYLNETGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +LE  Q E+Q +    SG LR+   +  G   +   + +F+   PD++I 
Sbjct: 65  FFSRCRTILDELEAAQQEVQNTEGILSGVLRLNAPLSFGITHITPLITDFMKENPDVRID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +K ID+  +  D AIR+   +Q SSLI +K+ T      A+P ++       + + 
Sbjct: 125 IDLSDKRIDLIAEGFDLAIRI-GALQDSSLIAKKISTARQVPCASPDFIAKHGALDNPEA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GS 239
           L+    + + +   +   D+ ++        E +   + V+  LS     VL      G 
Sbjct: 184 LNDMPGLIYAN--SRTPSDWTYVTP------EGKAGTVHVSQRLSATNGDVLRDAAIAGL 235

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+  LP +++ +  N   LV +M D       ++  YP+      + +AF +F+      
Sbjct: 236 GVVNLPTFLLFEAINDGTLVPLMADHDWSELDIFAVYPKTTILPRRTRAFVDFMA----- 290

Query: 297 WKF 299
           W+F
Sbjct: 291 WRF 293


>gi|187919825|ref|YP_001888856.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718263|gb|ACD19486.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 304

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 131/290 (45%), Gaps = 12/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  S SF+  A++LH +QS+IS+Q++ LE  +G  L  R  R L LTE+G +  
Sbjct: 7   MQTFVRVVESRSFSAVADELHATQSAISKQVAALERSLGANLLVRTTRSLALTEEGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +  L+    +  G +R+A  +  G+  L   +K F+  +PD+++ L 
Sbjct: 67  VQARRLVAEIAEAESALKTGEEQLRGWIRVAAPVGFGRLKLMPLVKSFMAAHPDVRVDLR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK----NCREPLSI 183
           L +  ID+     D  +R+   +  S L+ R++ T      A   Y++        P+  
Sbjct: 127 LHDSFIDLVDQGIDVTVRI-GALDDSRLVARRVGTSQRMLLAHSDYVRALSPGSHAPVDP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGS 239
           ++L  H  I + ++       F   A      G  R       +Q NS   +    V G 
Sbjct: 186 EDLLAHECIVYTEMSNSNSWTFTAGAGASATRGTLRSVRVAGHIQTNSSEVLRLAVVTGM 245

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GI   P ++ ++   +  +VR+M    +P   ++   P   K+  K++AF
Sbjct: 246 GIGYAPTWLFENELASGEVVRLMPYWESPQSPIHLVSPPERKHAAKVRAF 295


>gi|327194116|gb|EGE60990.1| LysR family transcriptional regulator [Rhizobium etli CNPAF512]
          Length = 289

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 127/275 (46%), Gaps = 15/275 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +W  +++F  VARSG+   AA  LH S  ++ R++  LE  +G  LF R A GL LT
Sbjct: 1   MAVEWSDVKIFLAVARSGTLGGAARALHTSHPTVGRRLRTLEEAIGHTLFQRTADGLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           E+G  +  +  ++       +  L  QE ++K  G LRI++    G  +L   L +F   
Sbjct: 61  EEGHGIIALAEQMEEGALAMERRLAGQEQNLK--GNLRISSADWFGAYVLPPILADFSKD 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP++ ++++   +  +++   AD A R+  P  ++ +IQR+L  +    Y A    +   
Sbjct: 119 YPNVDVEILTGTRLFNLAQREADVAFRI-IPFNNADVIQRRLFRLEYGVYIA----EESP 173

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +P    +     LIT  D       D  WL     P   P    L+ N+     + C  G
Sbjct: 174 DP-KFGDGTGFRLITH-DTSTGQFPDIAWLVE-SFPNARP---VLRSNNRNVQGRMCKQG 227

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
            GIA+LP  +    P + R+      P+  ++  Y
Sbjct: 228 VGIAVLPRVVGNQIPGIRRLELPKPPPTRDIWMGY 262


>gi|299531447|ref|ZP_07044855.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298720610|gb|EFI61559.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 291

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 134/274 (48%), Gaps = 11/274 (4%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SF  A   L +S S++ + ++ LE ++G++LF+R  R + LT++GS  H     +  +L 
Sbjct: 18  SFAEAGRALCISASAVGKNVARLEQQLGLRLFHRTTRQVRLTQEGSLFHERCRRILDELH 77

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
             +  +Q ++  P G+LR++    +G   L   L EF   YP++++ L  ++  +D+   
Sbjct: 78  DARAAMQAAAEAPRGRLRMSLPT-IGYRFLLPVLPEFQARYPEVELDLDFNDHLVDVVEA 136

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D  IR    +  S L+ R+L        A+P YL     PL+  +L  H+ + +  L 
Sbjct: 137 GLDVVIR-SGELADSRLVARRLGPFRFILAASPAYLSERGVPLTPADLAGHSSLRYRFLN 195

Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNL 255
              +E++        PI       L  N+  +++   V G G+A +PD++ +D      L
Sbjct: 196 SGKLEEWMLPGLPAMPI------ALVCNNMEAMLGAAVSGLGLAYMPDFMARDALARGEL 249

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +++ + +T S      +P + + + K++AF +F
Sbjct: 250 QQVLAEQLTHSGQFSALWPSSRQLSPKVRAFVDF 283


>gi|307728771|ref|YP_003905995.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583306|gb|ADN56704.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 305

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 11/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +  F  V    S T AA  L L +S+IS +++ LE E+G++L  R  R  ++TE 
Sbjct: 2   LDLNDIYYFVQVIEHKSITAAARALALPKSTISYRVAQLEAELGVRLINRTTRQSSVTEI 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++ +     +  +    +  +++  + PSG +RI+T +   Q  L+G L +F   +P +
Sbjct: 62  GAEFYAHAIAMLQEAHAAESAVRQRILSPSGLIRISTAVATAQFALKGLLPKFCERHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I     + ++D+  +  D AIR     +Q+S+L+QR L       +A+P +L     P 
Sbjct: 122 RILQRTADIEVDVIAERFDIAIRAHSHALQNSTLVQRTLALTPWMLFASPGFLDGSVAPK 181

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
             ++L  + +L    D +P       W+      +   R+   L  +  L++      G 
Sbjct: 182 EPEDLIGRRSLFMVRDGVPN-----EWVLKSGGDVRRLRVDPVLMTDCMLTLKDAAAAGL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP YI K+      L+R++ D       +    P A      ++AF +++
Sbjct: 237 GIVALPAYICKEEVAQGALIRVLSDWTCGDAQLTALVPFAQNRLPSVRAFLDYL 290


>gi|251791692|ref|YP_003006413.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247540313|gb|ACT08934.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 296

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 134/289 (46%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  SGSF+ A+ +L + Q +IS+ I  LE ++ +KL  R  RGLT TE G + +
Sbjct: 7   LETFVCVYESGSFSAASRRLGIGQPAISKAIMQLEQQLAVKLLLRSTRGLTPTEAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +    +L   Q E++  + + SG LR++  +   +  +  +L  F+  +P +++  I
Sbjct: 67  GQVAPALQQLHDAQDEVRGGNGELSGYLRVSAPVTFARLHVLPHLHVFMSQHPQLKVDTI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  +  D A+RL   ++ S L  RK+ +  M   A P Y      P S + L+
Sbjct: 127 LDDRPVDLIAEGIDVALRLGD-LKDSGLTARKMGSAPMRLLATPAYFAAHGLPASPEALE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            H+ +    L  +     NW    D    +  +S  ++  +   + +  + G+G+ +   
Sbjct: 186 NHDAV----LYLQADTPGNWRFRRDDRQCQVTLSGRIRTTAAEGVREAVLAGNGLTVASA 241

Query: 247 YIVKDNPNL-----VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++    P L     V  + D       ++  YP     + + +AF  F+
Sbjct: 242 WMFA--PELASGVVVTALTDWHIGVMDLWAVYPGGRLTSARARAFTEFV 288


>gi|209548436|ref|YP_002280353.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534192|gb|ACI54127.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 300

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 14/298 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G F+ AA +L++S + +   +  LE  +G++L  R  R ++LTE G   +
Sbjct: 7   LTVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTETGKYYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +S++  +L+         S  P G L++ T+  + + LL   + E++ LYP I +   
Sbjct: 67  ERSSQILAELDEADRTAGALSTTPRGTLKVYTSSAIVRFLLP-VVSEYMELYPSIALDFS 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  + +D+  D  D  IR   P   SSL+ RKL         +P Y ++ R P    E+ 
Sbjct: 126 IGERMVDMIEDGYDLVIRTVPP-PDSSLVARKLTPWRHVLVCSPAYFESHRMPQKPAEVA 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVL-GSGIALLP 245
            HN + +    P   E   W         E  +I    V++   ++++  L G GI L P
Sbjct: 185 DHNCLQYA-YYPYGEE---WRFEDGEGRQESVKIGGNAVSNSAEMLRFLTLNGQGIFLAP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
            ++V D+     LV+IM D     F++   YP       K++ F + +   F + R W
Sbjct: 241 SFVVFDDIAEGRLVKIMPDYRPVEFSINAVYPNRSHLATKVRLFIDLLAERFAEHRKW 298


>gi|158424896|ref|YP_001526188.1| regulatory protein [Azorhizobium caulinodans ORS 571]
 gi|158331785|dbj|BAF89270.1| regulatory protein [Azorhizobium caulinodans ORS 571]
          Length = 297

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 128/272 (47%), Gaps = 7/272 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR  SFT AA ++ +SQS++S  I  LE  +G++L  R  R ++ TE G +
Sbjct: 7   NDLLVFLAVARERSFTRAAAKMGVSQSALSHTIRQLEARLGVRLLTRTTRAVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       + ++E     L +   KP+G +RI+       ++L   LK FL  +PDI+++
Sbjct: 67  LLAGIGPHFDEIEAQVDALNDLRDKPAGTIRISAPDFAISSVLWPKLKAFLPQFPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N   DI  +  D  +R+   +    +  R           +  Y  +  EP + Q+
Sbjct: 127 LLQENGLTDIVTERYDAGVRMGDQLAKDMISARIGPDFRFAVVGSKSYFASRPEPATPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ I +    P     + W    +    + R+   L  N+  + +   V G G+A +
Sbjct: 187 LVQHSCINY--RFPTSGGLWAWDFEEEGREFKIRVEGQLVFNNIFNALDAAVAGFGLAYV 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           P+ +   +     LVR++E   +P +  Y+ Y
Sbjct: 245 PEELAIPHLAKGRLVRVLER-WSPYWDGYYLY 275


>gi|90023597|ref|YP_529424.1| LysR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89953197|gb|ABD83212.1| transcriptional regulator, LysR family [Saccharophagus degradans
           2-40]
          Length = 304

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 138/302 (45%), Gaps = 28/302 (9%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D   L  F  +A S SFT A+E L++++S++S+ IS LE E+G K+F R +R + LTE
Sbjct: 5   TIDLKLLHYFVTIAESLSFTAASESLNIAKSALSKGISKLEDELGTKVFERSSRVVRLTE 64

Query: 62  QGSKLHRVTSEVYHKLE---------TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL 112
            G  L       YH+ E          + I+  ++SV  SG L+IA    LG+ L    +
Sbjct: 65  AGQIL-------YHRAEVLLEDADHLVSDIKTLQNSV--SGHLKIAAPPTLGRMLAAEII 115

Query: 113 KEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
             FL  +PD+ I L L     D+  +  D A R+    +  +LI+R L   +    AAP 
Sbjct: 116 PPFLKQWPDVSISLKLSYDYEDLFKEGLDLAFRMGVN-RDQNLIERPLGRANRVVVAAPD 174

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSI 231
           YL       +  +L  H  + F + IP+      W       +    +S  LQ +   ++
Sbjct: 175 YLAQHAPIRTPHDLLPHKSLQFSNHIPQ-----EWTLQNRAKVEHVTLSVALQCSDLAAL 229

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
                 G G+A LP  +V+D   N +L  ++   ++    +   Y E  +   KL  F  
Sbjct: 230 RNAARAGLGVAQLPWMLVRDDINNGHLTHVLPQWLSTGLPIALVYKEGHRKAAKLAEFLK 289

Query: 289 FI 290
           F+
Sbjct: 290 FV 291


>gi|270262583|ref|ZP_06190854.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043267|gb|EFA16360.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 302

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 9/287 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++  W+  R F  V + GS + AA  L ++Q +  R ++ LE+ +G+ LF R   GL  T
Sbjct: 3   LNIPWEWYRTFLAVMKEGSLSGAARMLAITQPTAGRHVAALESALGLVLFTRSQIGLQPT 62

Query: 61  EQGSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +    L    +        +E +       +    G +R++ +  +G  +L   + +   
Sbjct: 63  DAAVALQGHAQAMENTASMIERSAASFSTRTAGLRGVVRVSASEIIGTEVLPPLIAQIKK 122

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP + I+L+L N+  D+    AD A+R+  P+Q   LI R++ +I +  +A+  YL   
Sbjct: 123 DYPQVTIELVLSNRIQDLLNREADIAVRMTAPVQ-EQLIARRIGSIEIGLHASSSYLARR 181

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P S++EL  H L+ F  + P  ++       + R      +  L+ +S ++ +     
Sbjct: 182 AAPESMEELFTHTLVGFDKMTPFILQALKHYPQLHR-----ELFTLRTDSDVAQLNLIRA 236

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G+GI +    +      L R+M D        +    E L+++   K
Sbjct: 237 GAGIGMCQVQLANSPVPLQRLMPDFFAFHLDTWLVMHEDLRHSKACK 283


>gi|288935847|ref|YP_003439906.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890556|gb|ADC58874.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 294

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 125/264 (47%), Gaps = 13/264 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+      +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKHRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   + S  +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIIAERFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L     I   FGD        + W   VD  +    P+      +SY+   +   LG 
Sbjct: 186 ADLVAQPCIAYQFGD-----GSLYAWELNVDGKKITHPPQGQWAFADSYME-AKAARLGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIME 260
           G+A +P+ ++ D+     L+R+++
Sbjct: 240 GLAYVPEELITDDLAQGTLIRVLQ 263


>gi|186470558|ref|YP_001861876.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196867|gb|ACC74830.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 316

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 137/292 (46%), Gaps = 15/292 (5%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           VA +G F  AA++L ++ SS++R +  LE  +G  L  R  R ++LT+ G       S+V
Sbjct: 13  VADAGGFAKAAQRLGVATSSVTRLMDALEASLGTALLTRTPRKVSLTDAGMAYVEQISKV 72

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              L      + +S   P G LRI       +  L  +L  FL  YP I + +++ +   
Sbjct: 73  LDDLAEADESILDSGASPVGALRITVPSAYNRTQLAPHLAAFLAEYPRIALDVVVADHFA 132

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+++D  D A+R+    +  +L+ +KL     +  A+  YL+    P +   L++H  + 
Sbjct: 133 DLALDRIDVAVRIGLISRDPNLVVKKLADNPRYVVASHDYLQRAGTPPAPVALNEHECLR 192

Query: 194 F---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
               G    + +  F+  A  +R     R+     NS   +++  + G GIALLPD++V 
Sbjct: 193 IAYGGSYRARQVWTFSRNALQERVDVRGRLIS---NSLEMLLEAVLAGHGIALLPDWLVN 249

Query: 251 ---DNPNLVRIMEDV-ITP---SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                  L+R+  D  +TP      VY  Y    +++ K++A     FL+AR
Sbjct: 250 HEIGAGRLMRLFADFDVTPQNGEAVVYAAYLPNRRHSSKVRAL--LRFLEAR 299


>gi|326796530|ref|YP_004314350.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326547294|gb|ADZ92514.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 296

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 123/253 (48%), Gaps = 19/253 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RVF  V  + SF  A+E L +S+  ++R I+ LE  +G+KL  R+ R +++T  G+
Sbjct: 4   FQAMRVFCRVYEAESFKSASETLDISRPMVTRYINTLEEVLGVKLLQRNTRNISITHAGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   LE  + EL + S  P G+L+++  +D G + +     EF  LYPDI+I
Sbjct: 64  LYYKHCVAILEALEEAENELNDLSNSPRGRLKVSVPMDFGLSHMVPIFNEFRKLYPDIRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  +++ +D++    D A+R    +     + R L     H  A+P YLK   EP   Q
Sbjct: 124 DVDFNDRRVDLTESGVDIAVR-GGDLGGDLFVARPLTEFKGHVCASPEYLKTYGEPNVPQ 182

Query: 185 ELDKHNLITFG--------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +L +HN + +           I    ++F+ L +               N+  ++ +  +
Sbjct: 183 DLIEHNCLLYSLAPSPNKWTFIDSKNDEFDVLVS----------GTFAANNGGALTRMAL 232

Query: 237 LGSGIALLPDYIV 249
            G+GI   PD++V
Sbjct: 233 EGAGIIYQPDFLV 245


>gi|310765471|gb|ADP10421.1| Transcriptional regulator, LysR family [Erwinia sp. Ejp617]
          Length = 302

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 136/301 (45%), Gaps = 20/301 (6%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M    D+LR    F     SGSFT AA +LHL+ S++S+ I+ LE  +G +LF R  R L
Sbjct: 1   MPVSEDRLRGIAPFVASVESGSFTAAAGRLHLTSSAVSKSIARLEARLGSRLFERTTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G   +   + V  +L   +  L      P G+LR+A     G+  +   L +F  
Sbjct: 61  LLTDAGQAFYDTCARVLSELAEAESVLAAQRSIPVGRLRVAVPHTFGRLHVMPLLNDFCR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN 176
            +P++Q+ L   ++ +D+  +  D A+R+  P     SL  R L +  +   AAP YL  
Sbjct: 121 QHPEMQLNLSFSDRFVDLFEEGVDMAVRIGGPGNYPPSLGVRYLGSERLIFCAAPDYLAQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM---- 232
              P S+ +L++H  I +  +         W   V  P G  RI+   V   +++     
Sbjct: 181 HGTPQSLAQLEQHQAIVYARIDGSTSP---W--HVASPDG--RITTRTVAHRMALADGEA 233

Query: 233 --QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
                V G G+A +  +++++      LV ++  +  P   +   +P   +   K+ A  
Sbjct: 234 QRSAVVAGLGVAQMATWLMEEQLARGELVPLLPQLAVPGLPLCVVWPRRKQLMPKVDALL 293

Query: 288 N 288
           N
Sbjct: 294 N 294


>gi|188592169|ref|YP_001796767.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|170938543|emb|CAP63530.1| putative TRANSCRIPTION REGULATOR PROTEIN, LysR [Cupriavidus
           taiwanensis LMG 19424]
          Length = 306

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 126/271 (46%), Gaps = 9/271 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A +GSF  AA +L L++S+I + I+ LE  VG +LF R  R L LT+ G   +  
Sbjct: 14  AFVAAAEAGSFAQAAVRLGLTRSAIGKAIARLEARVGARLFVRTTRSLVLTDDGQAFYER 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            ++   +L+  Q  L+      +G++R++  +  G++ +   L +    +P ++++    
Sbjct: 74  CAQALEELDAAQHMLEAGRGAVAGRVRVSAPVVFGRHHVAPLLLQLADRHPQLRLEGNFT 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D + D  D AIR  +   S +L+ R L    M   AAP YL+    P S   L  H
Sbjct: 134 DRLVDFADDGIDLAIRSGRLPDSDTLVARPLGAQAMVLCAAPGYLRRHGTPASAAALLSH 193

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
             + +     +  +   W LA  D     P +S  L  +   ++    + G+G+A LP +
Sbjct: 194 QCLVY----LRGSQPVPWLLADTDGNPVRPELSHRLAFDDIDTLAMAAIRGAGVANLPLW 249

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           +V+       LVR++         ++  +P 
Sbjct: 250 LVRAPLQQGTLVRLLPQASASRTPLHLVWPR 280


>gi|169796339|ref|YP_001714132.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213156925|ref|YP_002318970.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483800|ref|YP_002326025.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|239503648|ref|ZP_04662958.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB900]
 gi|301346100|ref|ZP_07226841.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301511204|ref|ZP_07236441.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301595044|ref|ZP_07240052.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332852005|ref|ZP_08433872.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332871758|ref|ZP_08440198.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149266|emb|CAM87149.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|213056085|gb|ACJ40987.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986947|gb|ACJ57246.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332729582|gb|EGJ60920.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332731228|gb|EGJ62526.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 313

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+   
Sbjct: 13  MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ ++  
Sbjct: 73  ERCRQVISMVDEAEAEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+     D ++ L + +  S  + R++ TI     A+P YL+    P S ++L 
Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPEDLK 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P    D++ L              L  ++   ++       G+ALLP +
Sbjct: 193 NHACLRLVN--PSITPDWHLLNANGESCQIDIGGQLIADNPELLLDVVQQDMGVALLPMF 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              D   N  L  I+ +  +P   VY   P            R+FI  K R W
Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292


>gi|94310330|ref|YP_583540.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354182|gb|ABF08271.1| transcriptional regulator, LysR-family [Cupriavidus metallidurans
           CH34]
          Length = 362

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 8/273 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS  
Sbjct: 49  QLETFVSVASRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAF 108

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + + L   +  +    VK SG LRI      G+  +   +  F+  +PD+ + L
Sbjct: 109 LEDCQRILNDLHNAEASVSAGGVKASGHLRITAPAGFGRKHVAPLVPLFIESHPDVTLTL 168

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCAIRL   +  SSL+  +L        A+P YL     P   +EL
Sbjct: 169 DLSDRVVDLVNEGFDCAIRL-GDLPDSSLVSIRLAENRRVVVASPEYLARAGTPTQPEEL 227

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + FG           W+   D      ++   ++      + ++C+ G G+A   
Sbjct: 228 ARHNCLAFG---ASANVQRGWVFQQDGRATTVKVGGNMECTDGAVLHEWCLGGYGLAWRS 284

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            + V     +  LV ++++   P   ++  +P+
Sbjct: 285 WWEVGQEIASGRLVTVLDEFQAPPIGIHAVFPQ 317


>gi|262172925|ref|ZP_06040602.1| putative LysR-family transcriptional regulator [Vibrio mimicus
           MB-451]
 gi|261890283|gb|EEY36270.1| putative LysR-family transcriptional regulator [Vibrio mimicus
           MB-451]
          Length = 309

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 144/291 (49%), Gaps = 11/291 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR  SFT AA ++ ++++++S+ +  LE ++ ++L  R  R ++LTE+G +L  + 
Sbjct: 14  FAHIARHRSFTKAASEMGITRAALSQHLKALEQQLQVRLINRTTRNMSLTEEGQRLLDIL 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 +E    EL +S V+PSG +RI+ +    + L++ +L EFL  YP I+++LI+D+
Sbjct: 74  QPSLMSIEQVVNELNDSHVEPSGLIRISVSRTAARLLIEPHLGEFLSRYPKIRLELIMDD 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              +I  +  D  IRL   +    +       +      AP Y K    P + ++L+ HN
Sbjct: 134 GFSNIVAEGVDAGIRLGISLDEHMVAVPITPPLTTAIVGAPDYFKRNGTPQNPEDLETHN 193

Query: 191 LITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            + +       ++ ++ L + D      + EP+ + +  N   S++Q  + G G+    D
Sbjct: 194 CLAYRFTSSGTIDHWS-LTSPDIEKHTVVFEPKGNAV-FNDDHSMLQAAIQGVGLVKHID 251

Query: 247 YIVKDNPNLVRIMEDVITP---SFTVYFCY-PEALKNTGKLKAFRNFIFLK 293
             V+ + N  R +  V+ P   SF  ++ Y P       K++   +F+  K
Sbjct: 252 LWVEKHINEGR-LSRVLAPWCKSFPGFYLYIPSREHMPKKIRVLMDFLIEK 301


>gi|255291946|dbj|BAH90433.1| LysR family transcriptional regulator [uncultured bacterium]
          Length = 296

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 13/261 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ L+ F  +A++ S + AA +L  S S++SR+I  LE  + ++LF  H  G +LTE 
Sbjct: 1   MDWNDLKFFLALAQAKSLSAAATRLGTSPSTVSRRIEALELALKVRLFRPHRDGYSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L         ++   +    E     +G +RI     LG+++L   L  F+  YP I
Sbjct: 61  GQSLVPEAELAGTRMRVFERNALEIGDGLAGPVRIEAPELLGRDMLLPALIRFMEDYPAI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L    + + ++ + AD  IRL +P++ +  + R++  I    YA+  ++     P +
Sbjct: 121 RIELRSSVQPVQLAAEDADLVIRLVRPVRGNYRL-RRVGAIRFGLYASADHVARHGTPGN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRI-SCLQVNSYLSIMQYCVLGSG 240
            ++L +H ++ +        EDF +LA      G  P +   L++ S  + +     G+G
Sbjct: 180 PEDLHRHRMVGW-------TEDFAYLAMAAWLSGHCPGLRPSLRLTSLAAQVAAVEQGAG 232

Query: 241 IALLPDYIVKDN---PNLVRI 258
            A+LPD+I +     P LV +
Sbjct: 233 WAVLPDFIARPAGFLPGLVSL 253


>gi|238789797|ref|ZP_04633579.1| HTH-type transcriptional activator aaeR [Yersinia frederiksenii
           ATCC 33641]
 gi|238722156|gb|EEQ13814.1| HTH-type transcriptional activator aaeR [Yersinia frederiksenii
           ATCC 33641]
          Length = 303

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 97/208 (46%), Gaps = 17/208 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LETE+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + + L
Sbjct: 66  YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P      
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQYGTPEK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP 214
                       P  M +F+WL    RP
Sbjct: 181 ------------PSDMVNFSWLEYSVRP 196


>gi|89899253|ref|YP_521724.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89343990|gb|ABD68193.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 313

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 137/290 (47%), Gaps = 10/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++  F ++ RSGSF+ AA +L ++  ++S++++ +E  +G++L  R  R + LT +G  
Sbjct: 9   SEMAFFSLLVRSGSFSAAARELDITTPAVSKRLAQMEARLGVQLLNRTTRRIGLTPEGEV 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +   +  +  S   P G LR+  T+  G++ +   + +F   YP++QIQ
Sbjct: 69  YLEHARRILADIGDMEQLVSNSVAAPKGLLRVNATLGFGRSHIAPLISDFAKRYPEVQIQ 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L      ++ D  D  IR  +P   + +I R++ +      AAP YL     P    +
Sbjct: 129 LQLTVNPPSLTEDAFDVCIRFGEP-PDARMIARRIASNRRLICAAPAYLTRQGTPQVPND 187

Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +HN I     I +  E +  W L +  R         L  N     + + + G G+ +
Sbjct: 188 LAQHNCIC----IRQGEEAYGIWHLRSGQRSETVKVRGTLSTNDGEIAVNWALAGHGLIM 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++ +     +  L +++ +  TP   ++  YP++L+   +++AF +F+
Sbjct: 244 RAEWDIAKYLASGRLRQVLANWQTPGADIHAVYPQSLQTAARVRAFVDFV 293


>gi|134293115|ref|YP_001116851.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136272|gb|ABO57386.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 301

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 134/295 (45%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA QL+ +++++S  I  LE E+G+ L  R  R + LT+ G +
Sbjct: 5   DRFAVFRAVVETGSFTAAAAQLNQARAAVSFNIKQLEAELGVTLLTRTTRRVELTDAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + E+   + +       G LR+ +T++ G  ++   L  F+  +P ++++
Sbjct: 65  FYARCVRVLEEAESAIDDARSEHGGMHGVLRVTSTVEYGTMVVAPALHAFMQRHPALRVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK--LVTIHMHAYAAPHYLKNC-----R 178
           L      +D+  +  D AIRL +  Q   L  R   L T  +    AP  L         
Sbjct: 125 LETHATQVDLVRERVDVAIRLGRLEQFQDLPYRGACLATYEVRPVIAPSLLAEAGLSQIG 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P  +  L +        +    + D +      RP  +PR+  +   S L ++     G
Sbjct: 185 SPELLARLPQLGHTRLERIATWTLTDRDGNPHAFRPGAKPRV-VVDNASVLRVLARQ--G 241

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           SG+ALLP+++V+D+     LV  +     P   VY  YP       K++A+ +F+
Sbjct: 242 SGVALLPEWLVRDDLASGALVDALPGYRFPPQAVYALYPSTAHVPQKVRAWVDFM 296


>gi|167584727|ref|ZP_02377115.1| transcriptional regulator [Burkholderia ubonensis Bu]
          Length = 292

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 117/266 (43%), Gaps = 13/266 (4%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +S +     +  LE+  G+KL  R  R L LTE G   +    E+   +       Q   
Sbjct: 28  MSATMAGNHLRALESRTGMKLLNRTTRRLALTEFGETYYARCQEILRLVSDADRHAQHRH 87

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             PSGKLR+   +  G  +L   L ++L  YPDI ++L L ++ +D+  D  D AIR+ K
Sbjct: 88  TLPSGKLRVTAPVSFGNTVLVPALSDYLAQYPDIDVELTLSDRTMDLLDDGFDAAIRIGK 147

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P   + L+ R L    M   A+P YL     P    EL +H  ++F    P   +     
Sbjct: 148 P-ADARLVARPLAPYRMMVCASPAYLAAYGTPTHPDELVRHACLSFAVSAPASWKFRQGE 206

Query: 209 AT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPN---LVRIMEDVIT 264
            T   +P G      L +N    +    + G GI + P  +++ + N   LV +  +   
Sbjct: 207 QTFTAKPSGR-----LTINQGEGLRNAALCGMGIVMQPAVLLEADVNAGRLVPLFGEYEM 261

Query: 265 PSFTVYFCY-PEALKNTGKLKAFRNF 289
           PS  ++  Y P+    + KL++F  F
Sbjct: 262 PSRPMHIVYLPD--NRSQKLRSFVEF 285


>gi|114766628|ref|ZP_01445580.1| transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114541168|gb|EAU44221.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           HTCC2601]
          Length = 314

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F   A +GSFT AA++L +S    S+ ++ LE  +G++L  R  R + +T  G  
Sbjct: 21  DGLRAFVATAETGSFTAAADRLAISNRLTSKYVAELEARLGVRLLSRTTRRVGVTASGEA 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   L+    E+ E     +G LRI+  +  G+  +QG L  F   + D+ + 
Sbjct: 81  LLARAPALLDDLDEMLAEVTEDGRGFTGTLRISAPVTFGEKYVQGMLARFAAPHADLVVD 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D++ +  D A R+ +    +SL +R+L  +     A+P YL     P    +
Sbjct: 141 LRLTDAYVDLASEGIDLAFRVGEG-AVTSLKRRRLGALRSCVVASPDYLSRHGRPERPDD 199

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  I    +     E  +W  T D      ++ S  +VNS        V G GIA  
Sbjct: 200 LVAHACI----VDTNRSEPAHWAFTCDSVETAVQVPSRFRVNSAQVARDLAVAGHGIAFC 255

Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P +++ D+    R   ++ D  +P   +   + E      K+++  +F    AR
Sbjct: 256 PVFVLGDDLETGRLEPLLPDYDSPRRAISAVWLEGRTLPRKVRSLIDFAVEDAR 309


>gi|293396301|ref|ZP_06640579.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291421090|gb|EFE94341.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 310

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 97/190 (51%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++ +F +V   GS   AA +L +S S++S+ +  LE  VG+ L +R  R L LTE G  
Sbjct: 6   NRMAIFAMVVAEGSLAGAARRLGMSPSAVSQHMRSLEKAVGVPLLHRSTRRLALTEAGEA 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  + +  +  L E      G+LRIATT+ +G   L   L   LL +P + ++
Sbjct: 66  FYPGCEAMLQQAQQAEQRLAELRDTLVGELRIATTVGIGGGPLAEALSPLLLAHPKLSLR 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ D++ +D+     D ++R+ + +  +++I   L    M   AAP YL     P + Q+
Sbjct: 126 ILADDRVVDMIEQRVDISLRVNRQLADATMIAHPLSEWPMVLCAAPRYLSQYGVPETPQQ 185

Query: 186 LDKHNLITFG 195
           L  H  IT G
Sbjct: 186 LVHHRWITGG 195


>gi|259907349|ref|YP_002647705.1| LysR-family transcriptional activator [Erwinia pyrifoliae Ep1/96]
 gi|224962971|emb|CAX54452.1| LysR-family transcriptional activator [Erwinia pyrifoliae Ep1/96]
 gi|283477171|emb|CAY73078.1| Uncharacterized HTH-type transcriptional regulator ycaN [Erwinia
           pyrifoliae DSM 12163]
          Length = 292

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 19/287 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA +  L +SS+S++IS LE  +GI+L  R  R L LT  G +  
Sbjct: 8   MALFALVAGCGSFTAAAVRAGLPKSSVSQRISQLEQALGIRLINRTTRQLNLTFAGERYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + ++     PSG+LRI +   +G  LL      F   YPD+ +++ 
Sbjct: 68  VHCQEMLQASERAGVVIERLRDNPSGRLRITSPAGIGATLLARVNTAFQHKYPDVTLEVS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  ++     D A+R  +P Q SSLI R++        A+P YL +       ++L 
Sbjct: 128 ISDEMCNLVQSRFDVALRTGRP-QDSSLIGRRIGYCQRLLVASPDYLADYPALAHPRQLS 186

Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIA 242
            H  I        L+ +  E + WL           +    +   L   + C L S GI 
Sbjct: 187 DHRCIAHRAWNEWLLKRNEEYYRWL-----------LPPTHMTDNLVYARECALSSGGIT 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LLP ++  +   LV+++ +       ++  YP    N+  L  F +F
Sbjct: 236 LLPRFLSGE--KLVQVLPEWEVEGNELWLVYPGRKLNSPALSRFVDF 280


>gi|222149513|ref|YP_002550470.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221736495|gb|ACM37458.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 297

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 140/291 (48%), Gaps = 21/291 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD  R F  +A++GSF+ AA  LH+  +++ R+++ LE ++GIKL  R AR + LT +G
Sbjct: 8   NWDDYRCFLTLAKTGSFSRAARLLHVDHTTVGRRVAALEVDLGIKLVERLAREVRLTAEG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L  +   V   + + +          +G + I+    L   LL   L      YP+I+
Sbjct: 68  HDLATLGLPVEEAMASVERAAAGGGAALAGPVHISAPPGLASLLLAPKLVSLHRQYPEIK 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +  D    +++   AD A+RL +P+ S+ L+ RKL  I    +A+  Y         I
Sbjct: 128 ITMSSDKDFANLNRREADIALRLSRPL-SNGLVARKLRDIPFFFFASHTY--------DI 178

Query: 184 QELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            E D    IT+    D++P+     +WL    + IG  R   L+ +   S +Q    G G
Sbjct: 179 AE-DDWEFITYLQADDILPQQ----SWLM---QHIGS-RTIALRCSDAASQVQAAASGLG 229

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +ALLPDY+  ++  L +    +  P   ++    + +++  +++   +F+ 
Sbjct: 230 VALLPDYLGYNDTRLRKCPSRLTPPRRELWMVVHDDIRHAPRVRVVLDFLI 280


>gi|161521528|ref|YP_001584955.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352303|ref|YP_001947930.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345578|gb|ABX18663.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336325|dbj|BAG45394.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 303

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 130/294 (44%), Gaps = 15/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G +  
Sbjct: 12  LVAFEAAVRHASFTRAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSG--KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              ++V+H L T   E     +KP G  +L IA +  +    L   L EF   YP+I+++
Sbjct: 71  --AAQVHHLL-TQCAEATHDVMKPYGDLELTIACSSGVAVLWLTPRLPEFRAAYPNIKLR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   +
Sbjct: 128 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L    L+   D   + M    W     +DR   +P+   + +NSY  I+Q  +LG G++L
Sbjct: 186 LANETLLRLEDGQRQWMSWSEWFDQNDIDRQKAQPQD--ITINSYPQIVQMTILGQGVSL 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              Y++    +   LVR+ +   +     Y   P         + F  ++F +A
Sbjct: 244 GWRYMIDACIEAGVLVRVTDASASHGGGYYVISPNDRAQNQAARLFSRWLFEQA 297


>gi|325124090|gb|ADY83613.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 297

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 140/310 (45%), Gaps = 34/310 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L  F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 5   MKVDWDHLHFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 64

Query: 61  EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            +G  L  RV      ++E   +++++      G++RI T    G   L   L EF + Y
Sbjct: 65  LEGMALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL     
Sbjct: 120 PLLTIDLIPVPKMIKLSHREADIVVSIDRPTSGPYIITR-LSDYCLKIYGSKNYLAQNPP 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228
             ++++L +H  + +                +D  +  P + CL+            +S 
Sbjct: 179 IRALEDLTQHRFVNY----------------IDDLVYSPELYCLERLPLKLNANFRSSSI 222

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           L+       G+G+A+LP ++  D   L  ++E  +  + T +      L++  ++K   +
Sbjct: 223 LAQQIAVSAGAGLAILPKFLADDKQELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWD 282

Query: 289 FIFLKARDWK 298
           ++  +A  ++
Sbjct: 283 YLRKQADKYQ 292


>gi|264680046|ref|YP_003279955.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210561|gb|ACY34659.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 314

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 100/190 (52%), Gaps = 2/190 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V  +G FT AA++L +++S++ + ++ LE  +G +L  R+ R  TLT +G  
Sbjct: 8   EGVSTFVQVVEAGGFTAAAKRLGVTRSAVGKAVARLEARLGSRLLQRNTRTQTLTAEGQI 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   +    +L+  + +L    ++P G+LR++     GQ  +   L     LYP + I 
Sbjct: 68  YYERCTRALKELDAAEADLDSGRMEPIGRLRVSVPEGFGQLCVAPILLNLTRLYPQLSID 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L   ++ +D+  +  D AIR+  P+Q S +L  R L T H+   A+P YL     P  ++
Sbjct: 128 LSFGDRTVDLIEEGFDLAIRI-GPLQDSGTLSARLLGTQHISVGASPAYLARHGTPSKLE 186

Query: 185 ELDKHNLITF 194
           ELD H +I +
Sbjct: 187 ELDGHAVIGY 196


>gi|329905937|ref|ZP_08274303.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547399|gb|EGF32226.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 304

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GSF  A   L +S + ++R ++ LE  +G +L  R  R L+LTE G    
Sbjct: 7   MRVFAKVVEQGSFAGAGLALDMSNAVVTRHVADLEKHLGARLLNRTTRRLSLTETGLIYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T ++   ++         S KP+G LRI + +  GQ  L   L  + LL+P++++ + 
Sbjct: 67  ERTKQILQDIDDADAMASSQSNKPAGTLRIYSHLGFGQLQLAQLLPRYALLFPEVKLDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D  + +      +S+I R++    +   A+P Y++    PL  +++ 
Sbjct: 127 LSDHTVDLVEEGFDIGMFIELQKFDASMIARQIGLSDIILCASPDYIRLHGTPLEPEDIS 186

Query: 188 KHNLITFGDLIPKCMEDF--NWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +H  + F        E    +W   ++ R +  P  S L  N    + Q  + G GI + 
Sbjct: 187 QHVCLNF------AYEQLRHHWSLIINKRSVDVPITSKLVSNDGNLLRQCALAGMGIVIR 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + + D+     LVR++      +  V   YP   + + K+++F +FI
Sbjct: 241 SSFTLGDDLSSGRLVRLLPQHHLGTLAVTMVYPSRRQLSAKVRSFIDFI 289


>gi|188583535|ref|YP_001926980.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347033|gb|ACB82445.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 322

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 134/292 (45%), Gaps = 22/292 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VAR  SF+ AA  L +  SS+SR+I+  E+ VG++L  R  R L LT  G    
Sbjct: 10  MALFVEVARRKSFSQAAAALGMPISSLSRRITMFESTVGLRLLDRTTRKLALTSYGEAYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGNLKEFLLLYPDIQIQL 126
              S +  + + T  ++   +  PSG L+IA   D      L G + EF  L+  I + +
Sbjct: 70  AQVSRLVDEAQRTFDDMMAVAKGPSGFLKIAAPPDFWVLRHLSGVITEFSALHEHIHVHV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L    +D+  D  D A+ + +P + +SLI RK+  +    + AP YL     P++  +L
Sbjct: 130 DLKPAPVDLVSDNYDLAVAIEEP-RETSLIVRKVAEVENGIFGAPAYLAERGAPMTPFDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + H +I     +P       W       TV   +G P +SC   NS     ++ V G G+
Sbjct: 189 EAHQVI-----VPMQGTSATWTLTRGSETVATTVGGP-LSC---NSLSLARRFAVAGQGL 239

Query: 242 ALLPDYIVKDN----PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               + I  DN      L R++ D   P+  VYF     L    K ++F +F
Sbjct: 240 TRA-NVINVDNDLTTGRLQRVLPDWSLPATPVYFVTTSRLL-PAKARSFIDF 289


>gi|326403474|ref|YP_004283555.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325050335|dbj|BAJ80673.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 315

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 133/293 (45%), Gaps = 10/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA + SFT AA +L +S+ ++S+ IS LE  +G  L  R +R L+LTE G
Sbjct: 6   DLEAWALFAKVAETRSFTRAASELGISKPTVSKAISRLEARIGTALLNRTSRRLSLTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R    +  + E  + E  + +  PSG +R+   +  G   +   L E    YP++ 
Sbjct: 66  RRAARSAGRILTEGEALETEAMDQATAPSGLVRLTAPMSFGIAHVAPLLPELFETYPELS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+     D AIR+   +  S+L  R++  +      AP Y +    P   
Sbjct: 126 VDLHLADEVVDLVGGGFDIAIRIAA-LPDSALRTRRVCRVRRLLVGAPEYFERRGRPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L KH  + +  L       F       VD   G P    L+VN+  ++    V G G+
Sbjct: 185 GDLAKHVCLGYAYLPSSSRWHFRHATGEEVDVVPGGP----LRVNNADALRPMLVAGRGL 240

Query: 242 ALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A+ P+++  ++    R+   M D   P   +    P +     ++ A  +F++
Sbjct: 241 AVQPEFMAAEDIAAGRLEVAMADWSMPPIALNIVTPPSGLRPARVTAVIDFLW 293


>gi|283835609|ref|ZP_06355350.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291068821|gb|EFE06930.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 296

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 132/299 (44%), Gaps = 24/299 (8%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V  SGSFT AA +L +S   + + I+ LE ++G +L  R+ R  +LT+ 
Sbjct: 2   DKLRGMETFIAVVESGSFTSAATRLEMSAVMVGKYITQLEAQLGTRLLERNTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         V  ++   +  ++   + P+G LRI+     G  ++      FL  +P++
Sbjct: 62  GRVYFEEARRVLEQVSIAERSVERLRLAPAGTLRISAPTSFGACVISPLAATFLQAWPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L L N+ +D+  +  D AIR+   I  + ++ + L    M   A+P YL     P +
Sbjct: 122 RIELDLTNRMVDLVNEGVDLAIRI-GDIHQTDVVAKYLCPYRMAICASPDYLARHGTPRT 180

Query: 183 IQELDKHNLITFGD-------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
             +L  H  ++          ++P    +  W           R + L+ N    +    
Sbjct: 181 PADLVDHLCLSHTVWTARNEWMLPGAAGEVRW----------KRDAILRCNDGHGLRMAA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           V G+G+ L P+ ++ +      LVR++E        ++  + + L+   KL  F   + 
Sbjct: 231 VAGAGLLLQPEVLLAEELATGRLVRVLEAFTPQPRPIHLLWRQDLRALPKLTRFVGHVL 289


>gi|152979317|ref|YP_001344946.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150841040|gb|ABR75011.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 295

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 134/271 (49%), Gaps = 5/271 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V  SGSF+ AA+QL+L  S++S+ +  LE ++G +L  R  R L LT +G   +
Sbjct: 7   LQVFAHVVESGSFSKAADQLNLHVSAVSKAVKYLENQLGSRLLNRTTRSLKLTAEGEAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +LE T  +L   S +  GKLRI     +   +    L EF   YP+IQ+ L 
Sbjct: 67  EKAQFLLAELEETFQDLSGVSQQAKGKLRIEMPTAIAPFMF-AKLPEFQRQYPEIQLVLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++   ++  D  DC +RL + +  +S I R+L  + M   AAP Y+     P ++ +L+
Sbjct: 126 ANDGVSNLIDDGLDCTLRLGE-LADASYIARRLTDVAMQTCAAPSYVAAHGTPETLADLE 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+++ +     + +  + +                QVN   +++   + G GI  +P+ 
Sbjct: 185 SHHIVHYVSGSQRKVLPWQFRKKSGETDRFKAAHATQVNDSNALLFAALAGLGIVQMPEL 244

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           +++    N  LV ++  + +P+  ++  YP+
Sbjct: 245 MLRPYLANGELVPVLTALQSPTRPLWLIYPQ 275


>gi|160876657|ref|YP_001555973.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160862179|gb|ABX50713.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315268857|gb|ADT95710.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 299

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 132/283 (46%), Gaps = 21/283 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +++  D +R+F+VVA+ GSF  AA+ L +  S++SR+I+ LE  +G++L +R A  + LT
Sbjct: 3   LNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +       ++ +L     EL     +  GKLRI+  I+     L  +L  F   YP
Sbjct: 63  ATGQRYLERCGPLFIELNHVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRHYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I I L L N +ID+S +  D A R+ +P +    I R L TI      A          
Sbjct: 123 NIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISF-VLCASTSATQWHTL 180

Query: 181 LSIQELDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISC-LQVNSYLSIMQ 233
            +I+ L++H +I    +    +      +DF +         EPR +  L V+      Q
Sbjct: 181 QAIEALEQHPVIIAKPVKTWRLQHNITGQDFEF---------EPRGNIKLAVDDMAIASQ 231

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
             V G GI LLP  +  +   +  LV+I+ +      T Y  Y
Sbjct: 232 AVVAGLGIGLLPISMASEQIQSGKLVQILPEWQGIPRTAYLMY 274


>gi|77459375|ref|YP_348882.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383378|gb|ABA74891.1| LysR family transcription regulatory protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 305

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 144/302 (47%), Gaps = 20/302 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F V A+ GSF+ AAEQL  + S++++ ++ LE+E+G +LF R  R + LTE G    
Sbjct: 7   LKMFVVTAQLGSFSRAAEQLGKTPSALTKAVNHLESELGARLFERSTRRILLTEIGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V  +L+    E+++      G L+I   +  G+  L      FL  YP I +Q+ 
Sbjct: 67  ETARQVLQRLDEASEEIEQLQHGLRGSLKITAPLAYGRAFLDQVCDGFLQQYPQISLQVD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++     D A+R         LI R + +  +    +P YL     P++ Q LD
Sbjct: 127 LCDEFVNLLESGYDLALR-EGHDDLPGLIARVVGSNRLALCGSPEYLARKGLPVTPQTLD 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +H  + +    P    +F W A  D     + +P    L+ ++Y  ++   + G G+   
Sbjct: 186 QHEWLLYRH--PLLSREF-WWAERDGQRLSLAQPTAPLLRSDNYDLLLASALAGRGLLHT 242

Query: 245 P-----DYIVKDNPNLVRIMEDV-ITP-SFT--VYFCYPEALKNTGKLKAFRNFI--FLK 293
           P      YI   +  LVR+M D  I P SF   +   YP   + T K+ AF ++I  FL 
Sbjct: 243 PLWSAAPYIA--DGRLVRVMADYEIDPDSFGPHILAVYPSHRRATAKVVAFIDYIAGFLA 300

Query: 294 AR 295
            R
Sbjct: 301 ER 302


>gi|117920360|ref|YP_869552.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117612692|gb|ABK48146.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 303

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 143/287 (49%), Gaps = 29/287 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + LR+F +V   GSF  AA  + + ++S+SR+I  LE ++G KLF R  R L+LT
Sbjct: 1   MNVRINDLRLFLLVVELGSFAAAASSIGIPRASVSRRIGELEADLGTKLFTRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID---LGQNLLQGNLKEFLL 117
             G   H+   E+  +LE+    ++     P+G +++    D   +  +LLQ    +FL 
Sbjct: 61  PTGENYHQQLMEIIPRLESLNESVKNQRNMPTGSVKLGLVGDADVVTHHLLQ----DFLK 116

Query: 118 LYPDIQIQLILDNKDIDISMDYA-DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP I ++  + N      ++Y  D  I +   I+ +S + R L+ +    YA+P Y+  
Sbjct: 117 NYPLITLETHVSNLGYHDILNYGLDACIHIGN-IKDNSFVARPLMRVCRKLYASPDYIAA 175

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMED---FNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
              P S+ +L +H L+ +  L    +ED   FN        +GE R+    V++    ++
Sbjct: 176 HGMPTSLDDLSQHALMIY-RLQNGELEDRWKFN--------LGEYRVKSRLVSNSSQYIR 226

Query: 234 YCVL-GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVY-----FCYP 274
           + +L G+GI+LL +  V ++  L  ++E  + P + VY       YP
Sbjct: 227 HAILSGAGISLLSELSVVEHLQLGNLVE--VLPEYEVYVDDAWLVYP 271


>gi|149187638|ref|ZP_01865935.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148838518|gb|EDL55458.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 299

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 140/297 (47%), Gaps = 21/297 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA   SFT AAE+L LS+  +SR ++ +E  +  +L +R  R ++LT  G +  
Sbjct: 7   MRSFVEVAHCASFTKAAERLGLSRLQVSRHVNEVEQWLEQRLLHRTTRKVSLTTAGEQAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKP--SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + H  ET+Q+EL      P  SG +R+A  I L QN+L   +++F   +P++ IQ
Sbjct: 67  ARCESILH--ETSQLELSSQPQTPYLSGTVRVAAPIGLTQNILLDAVEQFTEQHPNVVIQ 124

Query: 126 LILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L   +   ++  +  D A+R   KP  + +LI RKL++I     A+ +Y++   EP    
Sbjct: 125 LFASDSFAELVDERIDIALRYTNKP--ADNLIARKLMSIDSLICASKNYIEKHGEPTRFD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN           +E  +W            +S  +  N    +++      GI L
Sbjct: 183 DLSNHNCFLH-------LERTSWEGVKGGETVSVNVSGNITANDLGVLVKAAQRDKGIVL 235

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP  +     ++ +L  I++D   P+ T++  Y   L  + +L   R FI   A  W
Sbjct: 236 LPCDLANPLIESGSLTPILKDYAIPTSTLWAVY---LSRSYQLPIVRQFIDFLADFW 289


>gi|59714331|ref|YP_207106.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59482579|gb|AAW88218.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 320

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 1/181 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V + GSFT AA    +  S++S+QI  LE E+G++L  R  R  +LT  G +
Sbjct: 5   NQLSLFIDVVQQGSFTKAAALHDMDNSALSKQIKKLEAELGVQLLNRSTRTFSLTPAGEE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   L+  +         P G++RI   + +GQ  LQ  + +F+  YPD+++ 
Sbjct: 65  ILEQAYQLVGSLDNVKSIADSYQAVPKGRIRITAPLHIGQGYLQPVISQFMTTYPDVEVV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L++D+K  DI  ++ D A RL + +  SSLI +K+  I     A+   ++   EP + +E
Sbjct: 125 LMMDDKRSDIISEHFDVAFRLGR-LDDSSLIAKKVADIRGVILASHSLIERFGEPSTPEE 183

Query: 186 L 186
           L
Sbjct: 184 L 184


>gi|329123509|ref|ZP_08252073.1| LysR family transcriptional regulator [Haemophilus aegyptius ATCC
           11116]
 gi|327471091|gb|EGF16546.1| LysR family transcriptional regulator [Haemophilus aegyptius ATCC
           11116]
          Length = 305

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSEGYDLALRIDY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GIA L
Sbjct: 184 LEHHN----GLLYKNAMNPVNWVGSRINQTQRFKIQSKVVSNSAFALLNMAKAGLGIANL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|312959076|ref|ZP_07773595.1| transcriptional regulator [Pseudomonas fluorescens WH6]
 gi|311286846|gb|EFQ65408.1| transcriptional regulator [Pseudomonas fluorescens WH6]
          Length = 322

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVADAGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ T   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILAYVEAAEAEASDAHARPAGQLKVHTMTGIGQHFVIDAIARYRRTHPDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L N+  D+  +  D +I L   +  S  + ++L   +  A A+P Y+K         +L
Sbjct: 126 TLANRVPDLLDEGYDVSIVLASELPDSGFVSQRLGITYSIACASPDYVKAKGCAHRPHDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+   ++   W  T + P G+  +    S   VNS  ++      G G+ 
Sbjct: 186 LNHACLR---LVSPVVQLDKW--TFNGPEGQESVAINTSPFLVNSADAMKTAITSGMGVG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP Y   +   N  LVR+M +  +    +Y  YP       K+K +  ++
Sbjct: 241 LLPVYAAIEGLRNGTLVRVMPNYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|221065093|ref|ZP_03541198.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710116|gb|EED65484.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 314

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 138/299 (46%), Gaps = 22/299 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +A  GSF  A   L    S +S+++  LE  +G++L  R  R L  T +G +
Sbjct: 10  DELATLLALAEQGSFAAAGRSLGRHPSVLSKRMQALERRLGVRLVERTTRQLHFTSEGLR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    S+  H +   + E  + + +  G+LR++    +G+  +   L EF L YP++ ++
Sbjct: 70  LVEKVSQASHLIREAEQEAAQGAQETRGRLRLSIPASMGRRWISPMLAEFSLAYPEVVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +DI  +  D AIR+   +  S L+  +L   +    A+  YL+    P   ++
Sbjct: 130 VEYSDRIVDIVGERFDAAIRIGH-LSDSRLVAARLCDQYRLLCASARYLERHEAPRRPED 188

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEP--------RIS-CLQVNSYLSIMQYC 235
           L +HN + +  L+     DF  W   + RP G          R+S  +  N   +++   
Sbjct: 189 LARHNCLGYTGLL-----DFPQW--RLVRPAGRRSARVVESVRVSGSMLSNDNEALLHAA 241

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GI    D+ +  +     LVRI+    +  +  +Y   P    NTG +KAF+ ++
Sbjct: 242 LKGVGIIAGSDWHLVPSIHAGELVRILPQWTLGEAGGIYLVRPSGQYNTGAMKAFKPWM 300


>gi|73539894|ref|YP_294414.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72117307|gb|AAZ59570.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 302

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 137/296 (46%), Gaps = 18/296 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  V   GSF+ AA+ L ++ S++SR +S LE  +G  L  R  R   LTE G  
Sbjct: 7   NAMAVFARVVECGSFSAAAQDLGMTPSAVSRHVSRLEATLGASLLQRTTRAFALTELGHA 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + +            + + +P G LR++ ++  GQ  L   L   L  YP +++Q
Sbjct: 67  VYAACARMSAAAREVTALGTDHTGEPHGVLRVSASVVFGQAWLAPRLPALLERYPALELQ 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D AIR+ + +    L+ R L  +     A+P +L+    P S +E
Sbjct: 127 LTLVDRMVDLVEEGLDVAIRIAREL-PPGLVARPLRPVRYQLVASPGWLRLHDAPASPEE 185

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L     +      FG+      +      TV  P   PR +   VN+ ++I+      +G
Sbjct: 186 LPHTRCVYLGYGAFGERWSLRHKTSGDDVTVRIP---PRFT---VNNSMAIVAMVERDAG 239

Query: 241 IALLPDYIVK---DNPNLVRIME--DVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
           I L+PD+       +  LV +++  D++ P   T Y  Y        K++AF +++
Sbjct: 240 IGLVPDFSAAAGLADGRLVTVLDDWDILEPYIGTAYAVYTPTRHVAPKVRAFVDYL 295


>gi|330811622|ref|YP_004356084.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379730|gb|AEA71080.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 305

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 139/299 (46%), Gaps = 16/299 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + V+  V  +GS T AA+   +S + +   +  LE  +G++L  R  R   LTE GS
Sbjct: 4   FQAMTVYVKVVETGSLTAAAQACEMSTTMVGNHLRALEQRLGVRLINRTTRRQRLTEFGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   EV   +  ++   +++  +P+G LRI   +  G   L   L EF   +  +++
Sbjct: 64  AYYQRCLEVLGLVADSERLAEQTQGEPTGTLRITAPLTFGSERLAPALAEFSQRFAQVKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L N+ +D+     D AIRL  P     LI R L+   +   A+P YL     P    
Sbjct: 124 DVVLTNQRLDLLEHGFDVAIRLGHP--DPKLIARPLMDYTLTICASPAYLARRGTPEKPT 181

Query: 185 ELDKHNLITFGDLIP---KCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           +L +H+ ++F        +  +D +W   ++ P GE ++     + +NS   + +  + G
Sbjct: 182 DLQQHDCLSFAYSAADEWRFAQD-HW--PINGPEGEIKVPVNGPMLINSSSGLHRAALAG 238

Query: 239 SGIALLPDYIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+ +LPD +V    KD  +LV +++    P   +   Y +      KL++F  F   K
Sbjct: 239 MGVVMLPDALVAQELKDG-HLVTLLQGYQLPHRPMSLMYAQDRYRLPKLRSFVEFALEK 296


>gi|326317865|ref|YP_004235537.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374701|gb|ADX46970.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 305

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 134/300 (44%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V R  SF  AA +L  S + +S++I  LE E+ +KL +R  R + +TE+G +
Sbjct: 8   DDLRVFTAVVRKASFAEAATELGASPAYVSKRIRLLEEELAVKLLHRTTRRVAVTEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +    +    E+  +  +P G LR++ +   G+ ++   +   +  +P +Q++
Sbjct: 68  VFHWAQRILDDWDQLLQEVAVTRREPRGLLRLSCSFGFGRRIVAPAVSRLVERHPGLQVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  IR+   I +  LI R+L   H    AAP YL     P ++ +
Sbjct: 128 LEVFDRLVDVAGEGFDLDIRVGDEI-APHLIARRLAGNHRVLCAAPAYLARKGMPRAVDD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------------LQVNSYLSIMQ 233
           L  H+ +   +               D P G  R+              L  N     +Q
Sbjct: 187 LASHDCLVIKER--------------DHPFGVWRLRSGAADRTVKVRGPLSANHGEMAVQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V G GI L   + V  +     LVR++ +       V+  YP  L+ + K++    F+
Sbjct: 233 WAVDGRGIVLRSLWDVGPDLAAGRLVRVLPE-WQQEANVWAVYPTRLERSAKVRVCVEFL 291


>gi|194472746|ref|ZP_03078730.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205358569|ref|ZP_02657497.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194459110|gb|EDX47949.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333194|gb|EDZ19958.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 300

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 8   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 68  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 187 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI   P   V++      L+ I+         V   YP
Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYHAAPLPVTLHYP 275


>gi|171315636|ref|ZP_02904870.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171099168|gb|EDT43941.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 303

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 137/297 (46%), Gaps = 19/297 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AAEQL L + ++S  +  LE  +G++L  R  R + LT +G+  +
Sbjct: 7   MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLGVRLLQRTTRRVALTAEGTTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+  +    ++   P G +R+        N +   L++F   YPD+++ L 
Sbjct: 67  ERCTRLLADLDDAETLFDDAGAAPRGVIRVDLPERFALNKVIPALQDFHERYPDLRVVLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P S  +L 
Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRVGELAQINCASPAYLARHGTPRSPDDLP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  +  G    +   + +W    D   G  +     S + VNS  + +  C+ G G+  
Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDSGALQTVKMRSVVAVNSSQAYLACCLAGLGLIQ 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            P   +    ++ +LV ++ +       V   +P     +G+  A R  IF+   DW
Sbjct: 243 APREGLAPLLESGSLVEVLPEWHAEPLPVSVVFP-----SGRHLAPRVRIFV---DW 291


>gi|157149122|ref|YP_001456441.1| hypothetical protein CKO_04961 [Citrobacter koseri ATCC BAA-895]
 gi|157086327|gb|ABV16005.1| hypothetical protein CKO_04961 [Citrobacter koseri ATCC BAA-895]
          Length = 299

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 133/293 (45%), Gaps = 5/293 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE   L + S+SRQI  LE  +G +L +R  R + LT+ G   +
Sbjct: 7   MQLFIRVAELESFSRAAETSGLPKGSVSRQIQALENHLGTQLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+      Q      SGKLR+   + + +NL+   L  FL  YP I+++L 
Sbjct: 67  ERAKDLLTNLDELDGLFQHDPASISGKLRVDMPVGVAKNLVIPRLPAFLQQYPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   ++ S LI R L  + +   A+P YL     P  + +L 
Sbjct: 127 SSDRLVDLIREGFDCVVRV-GALKDSGLIARPLGKLSVINCASPQYLARFGYPEGLDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +    + F  +AT +          L VNS  +    C+ G GI  +P  
Sbjct: 186 SHAVVHYSVNLGTRPQGFE-VATANGTQWIKTGGILTVNSTETYHAACLAGLGIIQVPRI 244

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            V++      L+ I+         V   YP     + ++  F  ++    +D+
Sbjct: 245 GVREALRAGTLIEILPQYRADPMPVSLLYPHRRNLSRRVHLFMEWLTGVMKDY 297


>gi|254255286|ref|ZP_04948602.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
 gi|124901023|gb|EAY71773.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
          Length = 371

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 10/231 (4%)

Query: 17  SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76
           +GSF  AA QL ++ +++S+ ++GLE  +G++L  R  R L LTE+G    R        
Sbjct: 72  AGSFAAAARQLGVTSAAVSKNVAGLEKALGVRLMNRTTRTLKLTEEGEAFLRHARIALET 131

Query: 77  LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136
           L+     +      P+G++RI+T+   G N +   L   L  YP + +++  D++ IDI 
Sbjct: 132 LDAAIDTVSAQRAVPAGRVRISTSAAFGHNHVLPALPALLARYPALSVEVDFDDRVIDIV 191

Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT--- 193
            D  D A+R    I  S+L+ R +  ++    A+P YL N   P +   L  H LI    
Sbjct: 192 RDGYDIAVRGGN-IPDSALVTRPICRLNTVLVASPDYLANHGVPETPDALHAHRLIARRF 250

Query: 194 -FGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             G + P     D   + T+D P G+   + L +++  S++Q      GIA
Sbjct: 251 LSGQVAPWNFTGDDKSITTID-PSGK---AMLTLSAPESLVQAACDSVGIA 297


>gi|91778427|ref|YP_553635.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691087|gb|ABE34285.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 297

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 146/302 (48%), Gaps = 35/302 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L L+Q ++SRQI  LE      LF RHA+GLTLT +G  
Sbjct: 8   NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEDYYKFPLFKRHAKGLTLTAEGEL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E + ++E  +I L+ +  +    L++ T +      +   +  F   YP++ +Q
Sbjct: 68  LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQAEYPELHVQ 122

Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +      D+D  ++  D AI         +Q+  L + +L  +      AP  LK+  +P
Sbjct: 123 ITTTWQHDVDFQLEPFDAAIIYGSSPGADVQAVPLFEERLTPV-----CAPDLLKD--KP 175

Query: 181 LS-IQELDKHNLITFGDLIPKCMEDFN-WLATV------DRPIGE----PRISCLQVNSY 228
           L+ + +L +H L+       +   D+  WLA V      + P+ +    P    L + + 
Sbjct: 176 LAELADLARHTLLH----PTRDHRDWKMWLARVTEMGAANAPVIDAEHGPSFDTLDMATN 231

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            ++  + V  S +AL+ + +      LVR  + V+   +  YF YP+++ +  KL  FR+
Sbjct: 232 AALQGFGVAISDLALIDEDVAAK--RLVRPFDTVLKTGWRYYFVYPDSVAHQQKLNLFRD 289

Query: 289 FI 290
           +I
Sbjct: 290 WI 291


>gi|121604202|ref|YP_981531.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593171|gb|ABM36610.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 340

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 96/183 (52%), Gaps = 1/183 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  V  +G+FT AA  + L + +++R I  LE E+  KL  R  R +T+T  G+
Sbjct: 4   FSAMQAFVRVVEAGTFTKAAYSMGLPKPTVTRLIQELEKELDTKLLNRTTRKVTVTVDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   S +  ++   +  +  +   P GKL++     LG  ++   L +F   YPDIQ+
Sbjct: 64  AYYEQASRLLGEVHELEASMSRAKASPRGKLKVDIPSSLGMAVIIPALPDFYARYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L + ++ +D+  +  DC IR  + I   S++ R++   ++ + A+P YLK    PL   
Sbjct: 124 ELGVSDRPVDLIAENVDCVIRGGE-ITDQSMVARRIGEFYIMSCASPAYLKRHGTPLHPS 182

Query: 185 ELD 187
           ELD
Sbjct: 183 ELD 185


>gi|84386521|ref|ZP_00989548.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84378626|gb|EAP95482.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 304

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 133/291 (45%), Gaps = 17/291 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  +A + + + A ++L LS    S  I  LE  +G +L +R  R ++LTE+G  
Sbjct: 4   EHLKLFVRLASTHNISQAGQELGLSPPVASIHIGKLEESLGARLVHRTTRKVSLTEEGMA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++   +E     +   +  P G LRI+     G+  +   LK FL  YPD+ + 
Sbjct: 64  FLPHAKQILLSVEAGVASVGTGNELPKGVLRISAPSSFGRMHVMPALKGFLAKYPDLSVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+     D AIR    +Q+SSLI RKL T      A+P YL     P + ++
Sbjct: 124 ISLSDSIVDLVDGGFDVAIR-NAELQNSSLIARKLSTDKRILCASPEYLAGHGHPKTPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L +H  I    L         W  T D P G+  I     ++V+   ++   CV G GIA
Sbjct: 183 LKQHQCINQTGL-------EGW--TFDTPEGDVTIKKKGAIRVDHGEAVRDVCVDGLGIA 233

Query: 243 LLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +   +I        +LV ++ D  +     ++  YP A     K++ F ++
Sbjct: 234 MCATWIAYKQLAEGSLVEVLPDYPLKDEAAIWAVYPSAQLLAPKVRVFIDY 284


>gi|117924083|ref|YP_864700.1| LysR family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117607839|gb|ABK43294.1| transcriptional regulator, LysR family [Magnetococcus sp. MC-1]
          Length = 315

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 133/301 (44%), Gaps = 27/301 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V R G F+ AA    + ++ +SR+++ LE  +G  L  R  R + LTE G
Sbjct: 3   DLNDLAFFAAVVRYGGFSAAARATGIEKTRLSRRVAALERRLGASLLQRSTRMIALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V    +     +     +P G++RI+  + L QN L   L  ++  +P + 
Sbjct: 63  ERFYERCQVVIEGAQGAYESIDALKAEPMGRVRISAPVVLAQNYLAPILPAYMAAHPKVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   ++ ID+     D A+R+   I+ S +L+ R++        A+P +L+   +P S
Sbjct: 123 VHLDATDRVIDLLEGRVDVALRVVAQIEDSPNLVAREVAPTRRIMVASPAFLQAHGQPTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDF----------NWLATVDRPIGEPRISCLQVNSYLSIM 232
           +  L +  +I        C  D           N  A  +   G PR+    +   L   
Sbjct: 183 LLVLKEMAVIC-------CHADLHEGRSRWVLRNGAAMQEGVQGSPRLVADDMRVQL--- 232

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  V G G+ALLP+ +V        L+R++ +  T    ++  YP   +  G L + R+F
Sbjct: 233 KAAVHGIGVALLPEPVVAAELRAGKLMRVLPEWATAERMIHVIYP---RPRGMLPSVRSF 289

Query: 290 I 290
           I
Sbjct: 290 I 290


>gi|91225774|ref|ZP_01260803.1| probable transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91189663|gb|EAS75938.1| probable transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 294

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 25/290 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA S  F+ AA+QL  S S +SRQ++ LE  +G+ L  R  R ++LTE G   ++  
Sbjct: 10  FVTVAESLGFSAAAKQLGCSTSHVSRQVTRLEERLGVALLARSTRMVSLTEAGQAYYQQC 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E+   L+    +L     + SG LR++      +N +   L  F   +P++ +++  + 
Sbjct: 70  KELVIWLQQANEQLTTQQTQLSGTLRVSAAGAFSENHVAPALMAFAKQHPNLTVEINFNT 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             ++   D  D AIR  + +  S L+ RKLV   M A A+  YL     P   ++L +H+
Sbjct: 130 SMVNFIEDGFDFAIRYGR-LSDSGLVARKLVDRPMAATASQRYLDEHGLPTHPEQLKRHS 188

Query: 191 LITFGDLIPKCMEDFNWLATVD-RPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
            I     +        WL   D +P+   ++    + N+  +++Q C  G G+A LP   
Sbjct: 189 CIIANKDV--------WLFEKDGKPLDGVKVQGRWKSNNAHTVLQACAEGLGVAYLPKSS 240

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             D   +  LV I+E       + +  Y             R+F+ L+AR
Sbjct: 241 FNDAISSGRLVPILEPYWGSGNSSWIVYQN-----------RHFLPLRAR 279


>gi|254504429|ref|ZP_05116580.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222440500|gb|EEE47179.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 310

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 12/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F ++A  GS   AA +  +S +++S +++ LE   G+ LF R  R ++LTE+G  
Sbjct: 4   DNLRLFMIIAEKGSLAAAARETGISTTTVSERLAALEAHYGVVLFNRTTRSISLTEEGRT 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V  ++      ++  +   SG +RI+  +DLG++++   +  F    P + I+
Sbjct: 64  LVNGARAVLIEVADLDTRIRHGAETLSGLIRISAPVDLGRSIISRAISAFTEENPAVSIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+     D A+R    +  S+L  R L +      AAP YLK    P + ++
Sbjct: 124 LSLSDGYVDLVGQGFDMAVRFGN-VTDSTLRVRSLGSFQRLICAAPEYLKRHGTPKTPED 182

Query: 186 LDKHN--LITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  HN  ++ FG+ +    E F   +   R  +   R+    VN    I  + + G GI 
Sbjct: 183 LMNHNCLVMRFGETLDSVWE-FGKKSKKKRVTVRGSRV----VNDGWLIRSWALAGHGIV 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L  +  V ++     LV ++ + + P   +   +P       ++ AF
Sbjct: 238 LKSELDVAEDIRSGALVSLLSEHLPPPNPLQMMFPPGRAQPRRVTAF 284


>gi|190575025|ref|YP_001972870.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190012947|emb|CAQ46579.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 301

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 127/289 (43%), Gaps = 14/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA  GSF  AAE L LS   + + I  LE  +G++L  R  R  +LT+ G    
Sbjct: 7   LRTFAKVAEVGSFAAAAEALDLSPQLVGKHIQALEQHLGVRLLNRTTRKQSLTDFGQAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  +   + +  +P G+LRI+  +  G + L   +  ++  YPD+Q+ L 
Sbjct: 67  ARARVILEEVEGAEELAEVARGRPMGRLRISAPVTFGVHALGPAVVAYMQQYPDVQVDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N  +DI  D  D   R    +  S L+ R+L    +   A+P YL +        +L 
Sbjct: 127 LSNSLVDIVEDGYDLVFRTGD-LADSGLVARRLGPYPLVLCASPDYLASRPAITHPNDLS 185

Query: 188 KHNLITFGDLIPKCMEDF----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  + F   I +    F      + TV      P  S   VN    ++   V G G+ L
Sbjct: 186 RHECLGFAHSIIRTRWSFRDADGSVLTV------PVSSRFMVNQAEPLLTAAVGGLGLIL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            P  ++        LV ++ D +  S  +   YP   + T KL++F +F
Sbjct: 240 QPYEMLAAALARGELVEVLPDHVPVSTWINLVYPRDRQLTPKLRSFLDF 288


>gi|87200778|ref|YP_498035.1| LysR family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136459|gb|ABD27201.1| transcriptional regulator, LysR family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 302

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 134/299 (44%), Gaps = 12/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R+F  VAR  SF  AA +LH+S  +++R ++ LE  +G +L  R  R + +TE G+
Sbjct: 4   WQSMRIFAEVARHSSFAEAARRLHMSAPAVTRAVAALEEHIGTRLLVRSTRLVKVTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +  ++   +     S   PSG L +      G+  +   L E+L  YP +  
Sbjct: 64  RYYADCQRILAEIAEAEAMAAGSYATPSGTLTVTAPAMFGRMYVLPILTEYLDRYPQVIG 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +  ++ +++  +  D A+R+   +  SS+I  ++ +  +    AP YL+    P +  
Sbjct: 124 RTLFVDRPVNLIEEGVDLAVRIGH-LTDSSMIATRVGSSRLVVVGAPDYLREHGVPENPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +  +               W    D  +  EP + C   N+  + +   + G G+A 
Sbjct: 183 DLGRFRIAAST----AAWASPEWQFANDVKVRVEPALLC---NTNDAAINASLAGWGLAR 235

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           + DY V     +  L  ++E    P F ++  +PE L    K++AF +    K R  + 
Sbjct: 236 VLDYQVGAAIADGRLQVVLESHEPPPFPIHVIHPEGLHAPAKVRAFIDLAVAKLRSSRL 294


>gi|330962434|gb|EGH62694.1| putative transcriptional regulator protein, LysR family
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 298

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 125/270 (46%), Gaps = 7/270 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA+  SFT AA +L +SQS++S  +  LE  +G++L  R  R ++ TE G +L 
Sbjct: 9   LLAFLAVAKERSFTKAAARLGVSQSALSHTVRSLEARLGLRLLTRTTRSVSPTEAGERLI 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +     + ++E     L +    P+GK+RI     +   +++  L  FL  YPDI +++ 
Sbjct: 69  QKVGPHFDEIEIELAGLSDLRDTPTGKIRINAMDHVLDVIIRPVLNTFLPKYPDISVEVC 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D   +DI+ +  D  +RL + +    +  R    + +    +P Y +    P + ++L 
Sbjct: 129 CDYSFVDIAAEGFDAGVRLGEAVADGMIATRIGPDMRLSVVGSPAYFEGRNRPETPRDLT 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            H        +P     + W  T D      R++  +  N    ++   + G G++ +P 
Sbjct: 189 SHRCNNL--RLPTNGGLYTWEFTKDGETLNVRVTGQVTFNGVYPLLDAALDGFGLSYIPH 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +V    D   L+ ++ED  +P+F  +  Y
Sbjct: 247 DLVAAHIDAGRLIHVLED-WSPTFAGFHLY 275


>gi|260596139|ref|YP_003208710.1| transcriptional regulator [Cronobacter turicensis z3032]
 gi|260215316|emb|CBA27276.1| HTH-type transcriptional activator aaeR [Cronobacter turicensis
           z3032]
          Length = 315

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 114/248 (45%), Gaps = 4/248 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 7   RMSVFAKVVELGSFTSAARQLEMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    + H+++    +L   +  P G LRI  +  + QN+L       L  YP + + L
Sbjct: 67  YQGCRRMLHEVQEVHEQLYAFNNSPIGTLRIGCSSTMAQNVLASLTAGMLRDYPGLSVNL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L ++ M   AA  YL     P    +L
Sbjct: 127 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVVCAAKSYLAQAGTPEKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ + +        E         R + + R      N  +++ ++   G+GIA +P 
Sbjct: 186 ANHSWLEYSVRPDNEFELIAPEGISTRLLPQGRFV---TNDPMTLSRWLKAGAGIAYVPL 242

Query: 247 YIVKDNPN 254
             V D  N
Sbjct: 243 MWVIDEIN 250


>gi|238762579|ref|ZP_04623549.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638]
 gi|238699224|gb|EEP91971.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638]
          Length = 323

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 145/320 (45%), Gaps = 34/320 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  V    SFT  A+ L+L +SS++  +  LE  + I+L  R  R ++ T  G  
Sbjct: 5   DAMRVFIRVVEQRSFTQTAQDLNLPRSSVTDAVKQLEKRLNIRLLQRTTRHVSPTLDGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   +E    E+  ++ KP G LRI     L ++ +   L +F+  YPDI++ 
Sbjct: 65  YYQRCLKIIADIEDA--EMAFANAKPRGLLRIDVQGTLARHFVLPQLPDFIAQYPDIELF 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D  +R+   +Q S ++ R++  +     AAP YL+    PL++ E
Sbjct: 123 ISEGDRLVDLIREGFDGVLRVGN-LQDSDMVARRVALLPQVTCAAPRYLQQHGAPLTLNE 181

Query: 186 LDKHNLITF-----GDLIP-------KCMEDFNWLATVDR--PIGEPRI----------- 220
           L  H +I F     G L+P       +C        +  R  P     I           
Sbjct: 182 LAGHQMIGFRSSATGGLMPLEFCIGTQCQPSAQKEHSYQRSPPYSSAEIQDVEVQNVKLP 241

Query: 221 SCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEAL 277
           + L V+   S +    L  GI  +P Y ++ +     L+ I+ +   P   V F YP   
Sbjct: 242 AILSVSGAESFVAAARLALGIIQVPRYHIESDLRAGTLIEILPEYAPPPMPVSFLYPRNR 301

Query: 278 KNTGKLKAFRNF---IFLKA 294
           + + +++ F ++   +FL A
Sbjct: 302 QLSPRVRIFSDWLSQVFLTA 321


>gi|161505852|ref|YP_001572964.1| hypothetical protein SARI_04029 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867199|gb|ABX23822.1| hypothetical protein SARI_04029 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 300

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE++ L + S+SRQI  LE ++G +L +R  R + LT+ G   +
Sbjct: 8   MKLFIHVAERESFSRAAEEVGLPKGSVSRQIQALENQLGTRLLHRTTRRVQLTQDGMAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 68  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLTNSLIMPRLSTFLHHYPGIALELC 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P S+ +L 
Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLTRVNCASPQYLARFGYPESLDDLA 186

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 187 LHAMVHY-SLTPGISSPGFSFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI   P   V++      L+ I+         V   YP
Sbjct: 237 LGIIQTPRITVREALRAGTLIEILPQYRASPLPVTLHYP 275


>gi|134282217|ref|ZP_01768922.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|134246255|gb|EBA46344.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 301

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 14/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LVDSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W     RP      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGE-----QPRVEWRFDGPRPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
              + V   P+L      R++ +  + +  ++  YP       +++ F +++ ++  R W
Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 296

Query: 298 KF 299
           ++
Sbjct: 297 RW 298


>gi|70732524|ref|YP_262287.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346823|gb|AAY94429.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 302

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 135/288 (46%), Gaps = 12/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS- 64
           ++ RVF  VA  GSF  AA  L L ++++S  +  LET +G +L +R  R + LT  G+ 
Sbjct: 5   EQYRVFIQVADMGSFIKAAHALELPRATVSSAVQQLETGLGTRLLHRTTRHVQLTADGAI 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L R    +    E  Q+      +  SG+L I     + + L+   L  +L  YP +Q+
Sbjct: 65  LLERARRLLADAAELNQL-FHHRQIDVSGRLNIDVPSRIARRLIVPALPRWLAQYPGLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   +++ID+  +  DCAIR+   +  SSL+ R L  + +   A+P YL    EP + Q
Sbjct: 124 ALGASDRNIDLVQEGIDCAIRV-GSLADSSLVARPLGQLALINCASPAYLAEQGEPHTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L     +  G   P    +  W   L   +  +G P  S + VN+  + +  C  G G+
Sbjct: 183 DLQNGQWMV-GYASPDTGREQPWEYLLEGREHLLGLP--SRVIVNNVENYIACCRQGLGL 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +P + V+   D   LV+++ ++      +   YP+    + +L  F
Sbjct: 240 IQVPRFDVQHLLDRGELVQVLRELPVAPMDICALYPDRRHRSRRLNVF 287


>gi|78049452|ref|YP_365627.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037882|emb|CAJ25627.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 307

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 2/179 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G F  AAE L +  +++S+ IS LE  +G+KL  R  R + ++  G+  +
Sbjct: 7   IRAFARVVETGGFNRAAESLQMPNATLSKSISALEKHLGVKLLERSTRRVRVSNDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+  +  L  +   P G+LR+ T       LL   L EF   YPDIQ+QL 
Sbjct: 67  ARVRHLLTELDDVEATLGRAQGSPKGRLRVDTGGSTACGLLIPALPEFCARYPDIQLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + ++ +D+  +  DCAI  R      +LI RK+ ++     A+P YL     P   ++L
Sbjct: 127 VTDRTVDVIGENIDCAI--RSTADDGALISRKIGSLAWTTCASPDYLVRYGVPTHPEQL 183


>gi|192290314|ref|YP_001990919.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192284063|gb|ACF00444.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 305

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 134/300 (44%), Gaps = 14/300 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA    F  AA +L LS S+++R ++ LE  +G +L  R  R + LT+ G +
Sbjct: 5   DTMTAFVAVADLQGFAPAARKLGLSPSAVTRMVAALEERLGTRLLQRTTRSVALTDTGVR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +E          + PSG+L ++  +  G+  +   L ++L  YP++  +
Sbjct: 65  YLERVRRILADVEEADTSAAAERIIPSGRLVVSAPVGFGRRHVAPLLSDYLRRYPEVTGE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  I++  D  DCA+R+   +  SSL+ R+L  +     A+P YL     P +  E
Sbjct: 125 LRLSDLMINLVEDGVDCAVRIGH-LSDSSLVARQLGAMRRIVVASPAYLAARGIPATPAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           +  H++I FG    +      W   VD    + RI+C   L  N     +     G G+ 
Sbjct: 184 IAAHDVIHFG----QTGAPVGWHFVVDGR--DVRIACTPRLVSNVADVAILDAERGGGLT 237

Query: 243 LLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +  Y   D     R+   + T   P   +   YP +   + K++AF + +  +  DW+F
Sbjct: 238 RVLAYQAADAIAAGRLQIVLATYEVPPLPIAIVYPTSRLLSAKVRAFID-LAAETSDWRF 296


>gi|114762412|ref|ZP_01441870.1| transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114545030|gb|EAU48034.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           HTCC2601]
          Length = 303

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 122/255 (47%), Gaps = 8/255 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+ +D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R L+ T
Sbjct: 1   MSY-FDNIRTFVRVYELGSMSAAGRDLRISSAVTSSRISQLEEHLGVRLFQRTTRSLSPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +R  +E+   +E+ + ++   +    G L +A  + +G+ L+   +  FL  YP
Sbjct: 60  EHGQSFYRGATEILDAVESAEAQIVNVTEHLKGALYVAAPLGVGRRLIAPQVPLFLAEYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L ++ +D++ +  D A  L +P + S+L  RK+  +     A+P Y+     P
Sbjct: 120 DVSVRLRLTDRKVDLTTEGLDLAFFLGQP-EDSNLRIRKIADVPRVLCASPEYVARRGMP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
                L  D+H  I      P   E F W L T D P         + +    +  + + 
Sbjct: 179 DDGDALLADRHECINL--RFPGAAE-FQWRLLTPDGPRRFAVTGRYESDDGDVLTDWALG 235

Query: 238 GSGIALLPDYIVKDN 252
           G GI L P + V ++
Sbjct: 236 GHGIVLKPVFEVAEH 250


>gi|331665142|ref|ZP_08366043.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
 gi|331057652|gb|EGI29638.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
          Length = 323

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  IQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR     +   +I R L  + +   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIRTGASPE-DGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|293394647|ref|ZP_06638939.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422773|gb|EFE96010.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 303

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 129/284 (45%), Gaps = 8/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT+ G +  + 
Sbjct: 9   VFVSIVERGSMIAAAEALGMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTDAGERTLQR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++    +   +  +ESS +  G LRI  +  LGQ  L G + ++L  +P + + L ++
Sbjct: 69  CRQMLQVAQDIDLAQEESSDELRGLLRITCSQSLGQTALVGAVSQYLKRHPQVAVDLQMN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +++  +  D A+R+   +   +LI R L T      AAP YL     P   Q+L  H
Sbjct: 129 NRAVNLVEERIDLALRITNEL-DPNLIARPLSTCASVVCAAPAYLVAHGTPRQPQDLALH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N +T+     K +  F              +S    N  + +M   + G+GI+L P Y  
Sbjct: 188 NCLTY-SYFGKSLWHFEHQGVKSAVAVSGNLSA---NESVVLMAGTLQGAGISLQPYYSA 243

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                   LV +M D    S  +Y  Y    +    L+   +F+
Sbjct: 244 APLLAKGELVELMPDYQPQSMGIYGIYTSRRQMPATLRTMLDFL 287


>gi|270262507|ref|ZP_06190778.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043191|gb|EFA16284.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 297

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 125/274 (45%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLISFLVVARERSFTKAAAKLGVSQSALSHAIRGLEERLELRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E+    L E   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  ERLLNSIGPRFAEIESELDALSEMRERPAGNIRITAGEHAVDSVLWPMLKSFLADYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  IRL + +    +  R    + M   A+P Y +    P + 
Sbjct: 125 VEITVDNTLTDIVAGRFDAGIRLGEQVAKDMIAVRIAPDMRMVPVASPAYFERYGIPNTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q L  H  I     +P     + W  A   R I       L  NS    +   +LG GIA
Sbjct: 185 QALQNHRCINM--RLPTMGGIYAWEFAKDGREIKVRVEGQLIFNSLRQRIDAALLGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+  V D      L R++ D   P F  Y+ Y
Sbjct: 243 FVPEDTVTDELAGGRLARVL-DEWCPLFPGYYLY 275


>gi|254485499|ref|ZP_05098704.1| transcriptional regulatory protein [Roseobacter sp. GAI101]
 gi|214042368|gb|EEB83006.1| transcriptional regulatory protein [Roseobacter sp. GAI101]
          Length = 294

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 27/297 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  L  F  VAR+GS   AAEQL+ + +++ RQ+ GLE ++G++LF R A GL L+  G
Sbjct: 3   DWKSLPAFLAVARAGSLRGAAEQLNGTHATVRRQVEGLEAQLGVQLFRRSAGGLDLSAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL     E    L      ++    + +G++R++        LL   L EFL LYPDI 
Sbjct: 63  RKLLPQALEAETALRQGFNAVRGLDSEAAGRIRLSADPMTAHFLLAPVLGEFLTLYPDIH 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + L      I     D +IR  + I   + + RKL  + +  +A+  Y          
Sbjct: 123 IDMNLSYAIDSIEKLETDVSIRHVREIDGDA-VGRKLFPLSLGVFASRDY---------- 171

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--------PRISCLQVNSYLSI-MQY 234
             LD+H      D  P+  E   WL   + P  +        PR +     +  ++ M  
Sbjct: 172 --LDRH----LHDAGPRG-EGLTWLGYGEVPELQAMIAASPFPRAAVRHAIADPAMHMHL 224

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              G G+  L  ++    P L R+    +  S + +      L+   +++ F +F++
Sbjct: 225 ARAGVGMTFLATWVQSVFPELERVRGTELDQSRSTWVLMHGDLRRVQRVRLFVDFLY 281


>gi|167565462|ref|ZP_02358378.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 336

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 130/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I++
Sbjct: 66  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRGQHPDVSIEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 186 ARHACLT---LRTPAFPTHEWL--LEGPNGTEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286


>gi|16119467|ref|NP_396173.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15162007|gb|AAK90614.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 313

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 13/276 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D      F  VA   SF  AA++L+++ S+IS  I  LE  + ++LF R  R ++LTE G
Sbjct: 12  DLAAFSAFLAVATHRSFRSAADELNMTPSAISHSIKVLEERLNVRLFNRTTRSVSLTEAG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          +E    EL+ +   PSG +RI  +    + +L+  L  FL  YP + 
Sbjct: 72  ERLASKLKPAMASIEEAVQELEGNGPVPSGTVRINASEGAIRLVLRPVLAPFLREYPQVH 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++ D +  DI  D  D  IRL + +    +    +  +   A A+P Y +    PL  
Sbjct: 132 LDIVSDGRLSDIVADGFDAGIRLAEAVPKDMVAIPVMGEVRFAAVASPEYFERRGYPLIP 191

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           Q+L  H+ I F     +    + W    +R     RI+    L ++    +++  + G G
Sbjct: 192 QDLHSHDCIRFRF---ESGAIYRW--EFERMGASERINVSGPLTLSDQPLMVEAAIDGIG 246

Query: 241 IALLPDYIVK---DNPNLVRIMED--VITPSFTVYF 271
           IA +PD++     ++  L R++ED     P   +Y+
Sbjct: 247 IAFVPDHLATEALEHGRLERVLEDWCPALPGLCLYY 282


>gi|73537956|ref|YP_298323.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72121293|gb|AAZ63479.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 303

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 16/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A  GSFT AA    ++ +++SR +  LE  +G +LF R  R + LT++G    
Sbjct: 13  IELFCLAAELGSFTAAAVAASVTPAAVSRTVQRLEERLGARLFVRTTRQIRLTDEGRVYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +     +L   + ++      P+G+LRI+         +   L EF  LYP+++I + 
Sbjct: 73  EQSRAALAQLVDAERQISGQQAAPAGRLRISLPTPYAHYRVLPVLPEFRSLYPEVEIDVH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+++D + D  D ++R R P   S+LI RKL    +   A P YL+   +P S  +L 
Sbjct: 133 ISNRNVDFADDTYDLSVRGRAP-DDSNLIARKLEDAELVVVATPEYLRRAGKPESPDDLP 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS---IMQYCVL---GSGI 241
           +H  I F    P       W   V+    +     +   SY +   I+    L   G+G+
Sbjct: 192 RHECIQFER--PSSGRRIPWTFQVN----DEDTDIMTAGSYAASEDILGGATLVRAGAGL 245

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                ++V+    +  LV ++++    +      YP A   T +++AF +F+  K
Sbjct: 246 FQTYRFVVEQDLRDGTLVEVLQEFGGSTRPFVLLYPSARYVTRRVRAFVDFLVDK 300


>gi|260769246|ref|ZP_05878179.1| transcriptional regulators LysR family [Vibrio furnissii CIP
           102972]
 gi|260614584|gb|EEX39770.1| transcriptional regulators LysR family [Vibrio furnissii CIP
           102972]
          Length = 310

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 6/180 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V R GSFT AA    +  S++S+QI  LE  +G++L  R  R ++LT  G ++
Sbjct: 6   QLSLFVDVVRQGSFTKAALLHDMDNSALSKQIKKLEQSLGVQLLNRSTRTISLTPVGEQI 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +   L   Q   +   + PSG ++IA     GQ  LQ  L  F+  YPD+++ L
Sbjct: 66  YQQAQVLEDTLNNIQRIAETHQLTPSGSIKIAAPNYFGQRYLQPVLDAFIGKYPDVELTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-----VTIHMHAYAAPHYLKNCREPL 181
           ILD+K  DI  D  D AIR+ K +  S+LI +K+     V I  + + A H L    E L
Sbjct: 126 ILDDKRADIIADKFDVAIRIGK-LADSNLIAKKITNTNFVLIASNDFVAKHGLPQSPEAL 184


>gi|184157726|ref|YP_001846065.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332876409|ref|ZP_08444178.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209320|gb|ACC56718.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|193077041|gb|ABO11799.2| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           17978]
 gi|322508033|gb|ADX03487.1| Transcriptional regulator LysR family [Acinetobacter baumannii
           1656-2]
 gi|323517619|gb|ADX92000.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735419|gb|EGJ66477.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 313

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+   
Sbjct: 13  MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ ++  
Sbjct: 73  ERCRQVISMVDEAEAEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+     D ++ L + +  S  + R++ TI     A+P YL+    P S ++L 
Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPEDLK 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P    D++ L              L  ++   ++       G+ALLP +
Sbjct: 193 NHACLRLVN--PSITPDWHLLNANGESYQIDIGGQLIADNPELLLDVVQQDMGVALLPMF 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              D   N  L  I+ +  +P   VY   P            R+FI  K R W
Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292


>gi|170767064|ref|ZP_02901517.1| transcriptional regulator, LysR family [Escherichia albertii
           TW07627]
 gi|170124502|gb|EDS93433.1| transcriptional regulator, LysR family [Escherichia albertii
           TW07627]
          Length = 299

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT  G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALENQLGTQLLQRTTRRVRLTPDGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   L       Q      SGKLR+     + +NL   +L +FL  YP I+++L 
Sbjct: 67  QRAKDILSNLNELDGLFQHDVTSISGKLRVDIPPGIAKNLFLPHLPDFLYQYPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +DI  D  DC +R+   +    +I R L  + M   A+PHYL     P ++  L 
Sbjct: 127 SSDHPVDILRDGFDCVVRIGT-LPDDGMITRPLGKLTMVNCASPHYLTRFGYPENLDNLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H L+ +   +   +    +    D  +   +    L VNS  + +   + G GI  +P 
Sbjct: 186 SHALVHYTPNL--AVHPLGFEVASDNGVQWVKSGGMLTVNSSETYLAAGLAGLGIIQIPR 243

Query: 247 YIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
            IV++     R++E  + P +      +   YP+  + + ++  F  ++
Sbjct: 244 VIVREALRAGRLIE--VLPGYRAEPLLISLVYPQRRELSRRVNLFMQWL 290


>gi|107024158|ref|YP_622485.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116688515|ref|YP_834138.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105894347|gb|ABF77512.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116646604|gb|ABK07245.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 11/248 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V    SF+ AA +L ++ SS++R+I  LET++GI+L +R    L  TE G  L+
Sbjct: 9   LALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLLY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +L   Q +L     +P G LR+      G+  L   L  F+  YP +Q+ L+
Sbjct: 69  GRATRMLAELRGLQEDLHSQHDEPGGLLRVDCPAPFGRRHLMAALAAFMQRYPALQVDLV 128

Query: 128 LDNKDIDISMDY----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L +  +D+         D A+R+  P++ +  +   L        A+  YL  C EP S 
Sbjct: 129 LTDSMVDLQGARLGSDVDLAVRI-GPLEDTRFVATVLAPQRRVLCASAAYLARCGEPASP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H+ + +    P     F     V     +PR    + N   ++++  + G G+A 
Sbjct: 188 DALGGHDCLAWHGAPPPGAWRFGERRHVP---AQPR---FRSNHSEALLEAAIDGLGLAH 241

Query: 244 LPDYIVKD 251
           LP ++V D
Sbjct: 242 LPTWLVAD 249


>gi|270262942|ref|ZP_06191213.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043626|gb|EFA16719.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 319

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 127/289 (43%), Gaps = 11/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VA  GSF+ AA +L +  SS+ R I  LE+ +   LF R  RGL LT+ G  
Sbjct: 27  EHLPIFLEVALLGSFSAAARKLGMVPSSLVRHIDALESALDATLFIRSTRGLMLTDAGEM 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +   +   + EL   S  P G LRI+     G+  +   L      YP + + 
Sbjct: 87  LKARAAALLSDITDIRAELASLSDVPQGTLRISCLPTFGKTYILPLLPTLAERYPQLFVD 146

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D + +  D AIR+ +  + S L   ++ T      A+P Y+     P  +  
Sbjct: 147 LDLTERQTDPTQELLDAAIRIGEQ-KDSGLYASRIATQRWVMCASPGYIARYGCPGDLNA 205

Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H LI  +    P C     W   +   +       L+ N + +  Q  +LG GI  L
Sbjct: 206 LPEHRLIARYNKQQPAC-----WTQILSGQLLNRCSMVLRCNDFTAQRQAALLGLGITFL 260

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+++V  +     L +++ED       +Y   P A K + +L AF   +
Sbjct: 261 PNWVVGPDIQAGRLHQVLEDPRQEQQGIYLLRPVA-KISARLSAFSALL 308


>gi|254795474|ref|YP_003080311.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|254594874|gb|ACT74235.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
          Length = 299

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL  +L EFL  +P I+++L 
Sbjct: 67  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPHLSEFLYQHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P +  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQNPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|238791596|ref|ZP_04635234.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238729212|gb|EEQ20728.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 300

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 130/266 (48%), Gaps = 12/266 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L+LT +G + +   
Sbjct: 10  FVRTAETGSFSAAGRDLGLGQPNVSRHVATLEEHLQTRLLHRTTRKLSLTPEGERYYLEA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   +E ++   +E +V P+G LR+A    L    L  ++ +FL  YP++ + L +++
Sbjct: 70  RRILEAVEESESSFRE-NVTPTGLLRVACPTALAHTFLVPHIPDFLERYPELTLDLQIND 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + I++  + A+ AIR+   ++ S++  R+L        A+  YL     P + ++L KH+
Sbjct: 129 RYINLVDEGAELAIRIGH-LEDSAMRARRLGMFERVCVASNKYLAKHGTPNTPEDLKKHD 187

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + +  L       F       + I  P    L+VNS  ++ ++   G GIA  P+++ +
Sbjct: 188 CLIYTLLTTGATWRF-------QDINVPVSGRLRVNSPEAVQKFVNAGIGIAQGPEWLFE 240

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCY 273
              +N NL  ++ D       +   Y
Sbjct: 241 EGLENGNLQLLLTDYTASPVPIQAVY 266


>gi|222110725|ref|YP_002552989.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221730169|gb|ACM32989.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 288

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 134/293 (45%), Gaps = 14/293 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR F   AR  + T AAE+LH++Q+++S+ I  LE  VG  LF R  RGL LT
Sbjct: 1   MHLPLNALRAFEAAARHLNLTRAAEELHVTQTAVSQHIRNLEERVGKPLFRRLPRGLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L  V S+ + ++      L ++  +P   L +          L   L+ F   +P
Sbjct: 61  DEGRQLVPVLSDSFARIGQALQRLADT--RPREVLTVGVVGTFAVGWLLPRLRAFHESHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L+  N  +D++ +  DCAIR        +  +R L+   +    AP      REP
Sbjct: 119 FVDLRLLTHNNRVDLAGEGLDCAIRFGDGAWHGTDAER-LMPAPLAPLCAPEVAARLREP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L    L+       +  E   W A    P   P +     +S L++ +    G+G
Sbjct: 178 ---ADLGAEALLRSY----RTDEWPAWFAAAHAPC--PVLRGAVFDSSLTLAEAAAQGAG 228

Query: 241 IALLPDYIVKDNPNLVRIMED-VITPSFTVYF-CYPEALKNTGKLKAFRNFIF 291
           +ALLP  + +      R+++    T +   Y+ C  ++   T  L+AFR+++ 
Sbjct: 229 VALLPVRMFERELRQGRLVQPFACTAALGDYWLCRLKSRAPTDALQAFRDWLL 281


>gi|217974510|ref|YP_002359261.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217499645|gb|ACK47838.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 299

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 136/287 (47%), Gaps = 29/287 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +++  D +R+F+VVA+ GSF  AA+ L +  S++SR+I+ LE  +G++L +R A  + LT
Sbjct: 3   LNYSLDDMRLFWVVAQQGSFKLAAQHLCIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +       ++ +L     EL     +  GKLRI+  I+     L  +L  F   YP
Sbjct: 63  ATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRHYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP-----HYLK 175
           +I I L L N +ID+S +  D A R+ +P +    I R L TI     A       H L+
Sbjct: 123 NIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISFVLCACSSATQWHALQ 181

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-----EPRISC-LQVNSYL 229
                 SI+ L++H +I     I K ++ +     +    G     EPR +  L V+   
Sbjct: 182 ------SIEALEQHPVI-----IAKPVKTWRLQHNI---TGQNFEFEPRGNIKLAVDDMA 227

Query: 230 SIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
              Q  V G GI LLP  +  +   +  LV+I+ +      T Y  Y
Sbjct: 228 IASQAVVAGLGIGLLPISMASEQIQSGKLVQILPEWQGIPRTAYLMY 274


>gi|121593069|ref|YP_984965.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120605149|gb|ABM40889.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 300

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 145/296 (48%), Gaps = 18/296 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR F  VA + SFT AAE+LH+++  +S QI  LE  +G  LF+R  R +TLT+ G
Sbjct: 7   DLNLLRAFLAVADARSFTAAAERLHIARPQVSLQIRRLENVLGAALFHRTTRTVTLTDAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +L   ++ +   LE     LQ +  + S   G+LR++  ++    ++   + EF + +P
Sbjct: 67  QRLFEESAPLMQGLEQV---LQHAGSRGSGLRGRLRVSAPVEYAVQVMSPVVAEFAVRHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L++ +K  D+  +  D +IR+   +++SS    KL        A+P Y   C  P
Sbjct: 124 EVSLELVVSDKVQDLVGEGIDVSIRVGW-LRNSSARVAKLGEFGQAVLASPEYRARCPRP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + ++L  H  I    L+P  +    W  T        R++  L+ +S +++    + G+
Sbjct: 183 EAPEDLAHHRWIAL-TLLPAPL---TWSFTNGTKDITVRMAPKLRTDSAVALRALLLNGA 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+++     ++ +     LVR++ +       VY  YP     T    A R F+ L
Sbjct: 239 GVSVGSLLHLESDIRSGTLVRLLPEWTLRKGGVYAVYP---PGTAIAPAARAFVEL 291


>gi|308050743|ref|YP_003914309.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632933|gb|ADN77235.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 293

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 121/259 (46%), Gaps = 9/259 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L+ F  V  +GSF+ AAE L L  + ISR ++ LE ++G  L  R  R L LT
Sbjct: 1   MKTRSDDLQCFLAVVDAGSFSAAAEALDLQVARISRAVTRLEQQLGTTLLNRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+           +L+  +  + + + +P G+LR+       Q+ L  +L  F   YP
Sbjct: 61  EEGATFADAVRAGLAQLDAAEEAVAQVAGRPVGRLRVDAASPFIQHQLLPHLAAFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L      ID+     D AIR+   +  S+L  R L    +H  AAP YL     P
Sbjct: 121 EIRLELSASEGIIDLLEKRIDVAIRI-GTLSDSTLHARPLGRSALHLVAAPDYLARQGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+  LD H+L+ F   IP    +  W      PI   R +    N  L + +  + G G
Sbjct: 180 DSVDALDGHSLLGF---IPPSRLN-QWPLPGTAPI---RPAVAVSNGEL-LRRMALDGHG 231

Query: 241 IALLPDYIVKDNPNLVRIM 259
           IA L  ++V  +    R+M
Sbjct: 232 IACLSHFMVAQDLEAGRLM 250


>gi|218892081|ref|YP_002440948.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254240345|ref|ZP_04933667.1| hypothetical protein PA2G_00992 [Pseudomonas aeruginosa 2192]
 gi|126193723|gb|EAZ57786.1| hypothetical protein PA2G_00992 [Pseudomonas aeruginosa 2192]
 gi|218772307|emb|CAW28089.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 311

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E  +  + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +   R 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGRR- 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIM 232
            L   E D  +L   G +      D    AT+  P G       EPR   L V+ ++   
Sbjct: 180 -LEHPE-DLEDLPFLGAI----HNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVLRK 230

Query: 233 QYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  V G G+ LLP+ Y  ++  + +LVRI+     P  T+   Y   L  + ++ A R  
Sbjct: 231 KAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIRAL 287

Query: 290 I 290
           I
Sbjct: 288 I 288


>gi|271502613|ref|YP_003335639.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270346168|gb|ACZ78933.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 296

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 137/292 (46%), Gaps = 19/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V   GSF+ AA +L + Q +IS+ I  LE ++ +KL  R  RGLT TE G + +
Sbjct: 7   LETFVCVYECGSFSAAASRLGIGQPAISKAIMQLEQQLAVKLLLRSTRGLTPTEAGQQFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +    +L+  Q  ++  + + SG LR++  +   +  +  +L  FL  +P+++  +I
Sbjct: 67  RQVAPALRQLQEAQDAVRGGNGELSGYLRVSAPVTFARLHVLPHLHTFLSQHPNLKADII 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  +  D A+R+   ++ S L  RK+ +  M   A P Y      P S   L+
Sbjct: 127 LDDRPVDLIAEGIDVALRVGD-LKDSGLTARKIGSAPMRLLATPAYFAAHGTPTSPDALE 185

Query: 188 KHNLITF-GDLIPK--CMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241
            H+ + +  D  P   C +        DR   + R++    ++  +   + +  + G+G+
Sbjct: 186 HHDAVIYLQDEAPGSVCFQKG------DR---QHRVTLSGRIRTTAAEGVREAVLAGNGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +   ++      N  +V  + D       V+  YP     + + +AF  F+
Sbjct: 237 TVASAWMFAPELANGTVVTALTDWHIGVRDVWAVYPGGRLTSVRAQAFTGFV 288


>gi|222872209|gb|EEF09340.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 124/277 (44%), Gaps = 18/277 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS   
Sbjct: 17  LETFVSVASRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSAFL 76

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + + L   +  +    VK SG LRI      G+  +   +  F+  +PD+ + L 
Sbjct: 77  EDCQRILNDLHNAEASVSAGGVKASGHLRITAPAGFGRKHVAPLVPLFIESHPDVTLTLD 136

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  DCAIRL   +  SSL+  +L        A+P YL     P   +EL 
Sbjct: 137 LSDRVVDLVNEGFDCAIRL-GDLPDSSLVSIRLAENRRVVVASPEYLARAGTPTQPEELA 195

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGI 241
           +HN + FG           W+   D      R + ++V   +       + ++C+ G G+
Sbjct: 196 RHNCLAFG---ASANVQRGWVFQQD-----GRATTVKVGGNMECTDGAVLHEWCLGGYGL 247

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           A    + V     +  LV ++++   P   ++  +P+
Sbjct: 248 AWRSWWEVGQEIASGRLVTVLDEFQAPPIGIHAVFPQ 284


>gi|218682193|ref|ZP_03529794.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 894]
          Length = 298

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 132/276 (47%), Gaps = 11/276 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  VA   SFT AA +L ++QS++S  +  LE  +G++L  R  R +  TE G
Sbjct: 5   NFNELLLFLAVAEERSFTRAAAKLGVAQSTLSYAVKELEARMGLRLLTRTTRSVATTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    ++E     L     KP+G +RI  +    ++++   L   L  YPDI+
Sbjct: 65  ERLRQSLAPRISEIEADIEALMAYRDKPAGTVRITLSNHAMESVVWPKLAPILGEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +DN   +I  D  D  +RL + ++   +  R      +   A+P Y  +   P + 
Sbjct: 125 LELSVDNSFRNIVEDGFDAGVRLGESLEKDMVAVRIGPDWRLVVVASPDYFNSRPVPTTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           QEL +HN I     + +    + W    ++   E R+     L  N+   ++   + G G
Sbjct: 185 QELMQHNCIN--RRLDRIGGLYAW--EFEKNDEEVRVRVEGQLTFNTDREMVGAALQGYG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           IA +P+  V  +     L  I+ED  TP F  Y+ Y
Sbjct: 241 IAFVPESYVATHLAERRLTLILED-WTPKFAGYYLY 275


>gi|160897431|ref|YP_001563013.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363015|gb|ABX34628.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 302

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 122/279 (43%), Gaps = 12/279 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V  SGS + A   + L+Q ++ R I GLE+ +G++LF R + G   TE   
Sbjct: 11  WEWYRSFLQVLESGSLSAAGRAMGLAQPTVGRHIDGLESALGLQLFTRSSDGFAPTEAAY 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    + +       +           G +R+  +  +G  LL   L +    +P+++I
Sbjct: 71  ELQPYAASMAATAAALRRVAASHGAGVRGTVRLTASEVVGVELLPPVLAQLRAAHPELRI 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L N   D+    AD A+R+ +P Q  +L+ R +  I +  +A   YL     P S+Q
Sbjct: 131 ELVLSNAVDDLLRREADVAVRMFRP-QQEALVARHIGAIELGLHAHESYLARHGVPASLQ 189

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           EL  H+LI F      I +  + F        P+       L  +S L+ +     G GI
Sbjct: 190 ELAGHSLIGFDHENAFIRRFQQQF--------PMFTREAMALSSDSDLAQLGAIRAGFGI 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
            +    +   +  LVR++    +     +    E L+ +
Sbjct: 242 GICQSALAARDAGLVRVLPQAFSWKLDTWVAMHEDLRKS 280


>gi|330963653|gb|EGH63913.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 299

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 132/286 (46%), Gaps = 13/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A  GSFT  AE + + +  ++R I  LE  + ++LF R  R + LT +G + +
Sbjct: 1   MQVFVKLAELGSFTKVAEAMQVGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60

Query: 68  -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV S +    ETT +  +  S    G+LRI       Q      L+ F   +PDI + L
Sbjct: 61  ERVKSNLADLAETTSMFDRNGSTL-RGRLRIDIPAAFSQRSFMETLRGFTRAFPDIDVVL 119

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+  +  DCA+R+ + +  SSL+ R +    M   AAP YL+    P  +++L
Sbjct: 120 GVTDRTVDLVAEGIDCALRIGE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTPEMLEDL 178

Query: 187 DKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++H  ++F  L         W   L   D P   P    + VN   + +Q  + G GI  
Sbjct: 179 ERHCGVSF--LSGHNHRPLPWHFSLNGEDLPY--PAQGAITVNESNAYVQCGLAGFGILQ 234

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            P   V+    +  LV ++E        V   YP       +++AF
Sbjct: 235 APGITVESFLASGELVEVLEAYRPLPRPVSVLYPSRSHLAPQVQAF 280


>gi|330820643|ref|YP_004349505.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327372638|gb|AEA63993.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 291

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 19/298 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  +RVF  +AR GS   AA +L  +Q ++ R++  LE ++G +LF R  +G   T++
Sbjct: 4   IDWSDVRVFLAIAREGSLGAAARRLGQTQPTMGRRLKALEQQLGQRLFQRTQQGFIPTDE 63

Query: 63  GSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G  L     R+  E    L     EL  + ++ SG LR++ +   G   L   + E+   
Sbjct: 64  GQALLVHAERMEIEALAALR----ELSGAQMQLSGLLRVSCSDWFGSLRLAPVIAEYTAR 119

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P + ++L+ D +   +    ADC +R+  P     ++ R+L++     YAA        
Sbjct: 120 HPGVTVELLADPRLYSLPHREADCVMRI-APFVEPDVVSRRLLSTAYAVYAAAGASAE-- 176

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
               +    +   +   D     M D  W   + R + E  ++  + NS  +  + C LG
Sbjct: 177 ----LSARGRGCRLVLMDTAFGAMPDVGW---IQRRLPEAAVAA-RSNSRETQARLCALG 228

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            G+A+LP  + +  P LVR+      PS   +  Y   ++   +L  F   +  +  D
Sbjct: 229 VGLAVLPIPLGEATPGLVRLDLGEAPPSRETWLGYHRDMRRQPRLSRFVELVVERLGD 286


>gi|298293420|ref|YP_003695359.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929931|gb|ADH90740.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 306

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 116/265 (43%), Gaps = 16/265 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  VAR+G    AA QL L  +++ R++  LE  +G KL  R   G  LT  
Sbjct: 1   MDWDHLRIFLAVARAGQMLAAARQLGLDHATVGRRLGVLEASLGSKLIERRTTGSELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      V  ++   Q  L    +  +G +RI      G   L   L      +P +
Sbjct: 61  GERLLAHAERVETEMLQAQAALGNVDLALAGTVRIGAPDGFGTYFLAPRLGRLAEEHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL    +   +     D A+ L++P +   L+ RKL    +  YA+  YL+       
Sbjct: 121 TIQLAPLPRSFSLPKREVDIAVTLQRPSE-GRLVARKLTDYTLGVYASRGYLERTGAIDG 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYCVL 237
             +L    LIT+   +P    D  +   +D     R I   R+ C  V   +  M+    
Sbjct: 180 TGDLAGRLLITY---VP----DLVYSPALDYFEAFREIEARRLECASV---VGQMEAVRA 229

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDV 262
           G+G+ +L DY  + +  LV+++ ++
Sbjct: 230 GAGVGILHDYAARTHGELVQVLPEL 254


>gi|290509831|ref|ZP_06549202.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289779225|gb|EFD87222.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 301

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 134/288 (46%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R++  V  + SF  AAE L   +S++SR +  LE  +G +L  R  R L++T +G +
Sbjct: 5   DAMRLYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++   +      S +P+G+ ++     L ++ +   + EFL  YPD+++ 
Sbjct: 65  YYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPDLELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI  +  DC IR  +   S++L+ R L        A+P +L     P SI +
Sbjct: 125 LCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQSIDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  +  G L  +     +WL ++D      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LHQHRAV--GYLNHRTGRTIDWLFSLDDGDCAIRMQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y+ +    +  LV  +E V +    +   YP+       ++AF ++
Sbjct: 243 ASYLAQPYLQSGALVACLEQVAS-DLPLSLVYPQNRYLPPAVRAFYDW 289


>gi|260555408|ref|ZP_05827629.1| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           19606]
 gi|260411950|gb|EEX05247.1| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           19606]
          Length = 313

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+   
Sbjct: 13  MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ ++  
Sbjct: 73  ERCRQVISMVDEAEAEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYT 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+     D ++ L + +  S  + R++ TI     A+P YL+    P S ++L 
Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPEDLK 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P    D++ L              L  ++   ++       G+ALLP +
Sbjct: 193 NHACLRLVN--PSITPDWHLLNANGESYQIDIGGQLIADNPELLLDVVQQDMGVALLPMF 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              D   N  L  I+ +  +P   VY   P            R+FI  K R W
Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292


>gi|218707150|ref|YP_002414669.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|300897309|ref|ZP_07115743.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|218434247|emb|CAR15165.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|284923546|emb|CBG36641.1| LysR-family transcriptional regulator [Escherichia coli 042]
 gi|300358915|gb|EFJ74785.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
          Length = 323

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR     +   +I R L  + +   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIRTGASPE-DGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLIYPQRRELSRRVNLFMQWL 314


>gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans]
 gi|133738827|emb|CAL61874.1| putative Bacterial regulatory protein, LysR family [Herminiimonas
           arsenicoxydans]
          Length = 293

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 126/268 (47%), Gaps = 10/268 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D L+ F  V  SG+   AA+ L  + S++SR +S LE ++   L  R  R + LT
Sbjct: 1   MDINSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    +    +   ++  +  ++    +PSG+LRI        + +  ++ EF  LYP
Sbjct: 61  DEGRLFLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  +++  D+     D AIR+   +Q S+L  R L    +H  A+P YL+    P
Sbjct: 121 QITLELTSNDQVADLLEHRTDIAIRIGN-LQDSTLHARALTANPLHLLASPDYLQRHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            + ++L  H L+ F        E  N W        G      L  +S  ++    + G 
Sbjct: 180 TTPEQLAGHQLLGF-----LQFESGNTWPIRHAGGEGLTVTPALFASSGETLRALALHGQ 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVIT 264
           GIA L DY+ +D+     LVRI+E+  T
Sbjct: 235 GIASLADYMTRDDIAAGRLVRILENYYT 262


>gi|146311770|ref|YP_001176844.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145318646|gb|ABP60793.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 294

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 130/282 (46%), Gaps = 21/282 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA +L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAARRLGLAQSGVSRSVRDLEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++     +  L+     L      PSG +RI  +       L   L      YPDI+
Sbjct: 66  EQLYQTAESGFDALDRGFSTLAHYRQTPSGTVRINASQHAIDKCLLPKLAVIKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ +++ +DI  +  D  +RL   + +  +  R    + M   A P + +    P + 
Sbjct: 126 LELMNESRFVDIIAERFDAGVRLGPEVGNGMIAVRITPDMEMAVVATPDHFRRYGFPQTP 185

Query: 184 QELDKHNLIT--FGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYC 235
            +L  H  I   FGD        + W    D      RP G+   S    +SY+   Q  
Sbjct: 186 ADLVIHPCIAYQFGD-----GSLYQWELAHDGKKIMHRPQGQWVFS----DSYME-AQAA 235

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            LG G+A +P  ++ D+     L+R+M+        ++  YP
Sbjct: 236 RLGLGLAYVPVELIADDLERGTLIRVMQRYSLRMDGLFLYYP 277


>gi|197106876|ref|YP_002132253.1| transcriptional regulator, LysR family [Phenylobacterium zucineum
           HLK1]
 gi|196480296|gb|ACG79824.1| transcriptional regulator, LysR family [Phenylobacterium zucineum
           HLK1]
          Length = 320

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 129/287 (44%), Gaps = 6/287 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +DW+ L+ F  VAR GS   AA  L ++Q++++R+I  LE  + +KLF R   G  LTE 
Sbjct: 2   YDWNDLKAFLAVARGGSTLAAARGLGVNQTTVARRIESLEAALKLKLFERGQTGSRLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      V    E             +G +R+     L  ++L   + EF  L+P++
Sbjct: 62  GHDLVAEAERVERAAERFGNRAAGHQRGMAGAIRVTAAEILANHMLMPGIAEFRRLHPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI+ ++ +D+    AD AIR    +  S L+ RK+       Y +  Y      P +
Sbjct: 122 QVDLIVTDRPLDLEAGEADVAIRSAPALAVSDLVARKVGEYDFALYCSRDYAARRGVP-T 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L  H+LI  G+L    M +   +A + R  G  +    + N+  +++     G G+ 
Sbjct: 181 LETLGSHDLIG-GELE---MAEGPGMAWMFRAAG-GKAPVTRSNTMSNLLHALKAGLGVG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +          L+R    +       +      LK+T +++AF +F
Sbjct: 236 PMVCQAADLERELLRCSPVIEEARGASWLITRRDLKDTPRVRAFIDF 282


>gi|15966629|ref|NP_386982.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307300336|ref|ZP_07580116.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307319619|ref|ZP_07599045.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15075901|emb|CAC47455.1| Putative transcription regulator [Sinorhizobium meliloti 1021]
 gi|306894741|gb|EFN25501.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306904502|gb|EFN35086.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 297

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 16/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G  L  R  R  +LTE G   
Sbjct: 6   RIRAFIDVVDAEGFSAAARRIGKSKALLSKYVRELEDELGALLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121
           +R  SE+  +++     ++ ++    G+LRI         D+GQ+L+     +F   +P+
Sbjct: 66  YRSASEILKEIDNLADLVRANNSDLKGRLRITVPRTFVDADIGQSLI-----DFGKEHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++ D++ ID+  +  D AIR+ + ++ S+LI RKL    +   A+P ++       
Sbjct: 121 LSLDIVSDDRFIDLVEEGFDVAIRITR-LEDSTLIARKLDDFQVLVCASPDFMAKAGPLG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL K   I   D   +    + ++     P        ++VNS L+  +  V G G+
Sbjct: 180 HPSELSKLPCIL--DTNGRSYSSWRFVEKDGSPFTVSVSGQIEVNSPLAAARAAVSGIGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LPD+I +       LV   +D +     +Y  YP       K++ F +F+
Sbjct: 238 AVLPDFIARPKIAAGELVTFFDDFLPKDRGIYAIYPHRRYLPTKVRTFVDFL 289


>gi|270262556|ref|ZP_06190827.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043240|gb|EFA16333.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 309

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 21/300 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F + A+S SFT AAEQL +++S++ + ++ LE  +G +LF+R  R L+LT  G       
Sbjct: 16  FVITAKSNSFTEAAEQLGITKSAVGKSVARLEERLGTRLFHRSTRKLSLTSDGEAYLTSC 75

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 L++ +  L      P+G +RI      G+NL+   L +    +P +++ L  ++
Sbjct: 76  LSALEILDSAENTLSRRQDNPAGTVRIDMPASFGRNLMMPVLLDITRRFPALRLALTFND 135

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + ID   +  D  +RL +   +  LI R+L    +   A P YL+    P   + L KH 
Sbjct: 136 RLIDPVEEGVDLVLRLGELQSTDELIARRLSRQRLLLCATPAYLEQHGIPTDTEMLKKHC 195

Query: 191 LITFGDLIPKCMEDFNWLATVD---RPIGEPRI-----SCLQVNSYLSIMQYCVLGSGIA 242
                     C+  +   A +    RP  E  I     +  Q++   +++  C+ G+GIA
Sbjct: 196 ----------CIMGYRRGAPLAWRFRPADEREIRFISAAAHQISDGDAMLMACLAGAGIA 245

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             P+ +V    D   LV +M D       +   +P       K++   + +  KA +  F
Sbjct: 246 QFPESMVNSHLDAGTLVTLMADHTPEPVELNVVWPRTRHLIPKVRLIVDELLRKAAEGHF 305


>gi|50119682|ref|YP_048849.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610208|emb|CAG73651.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 301

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 136/295 (46%), Gaps = 10/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +   GSF+ AAE+L L ++++S  I  LE  +G++L  R  R + +T++G   +
Sbjct: 7   MRVFVRIVELGSFSRAAERLALPRATVSNTIKQLEGRLGVRLLQRTTRQVQITDEGRVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++E       +  ++P GK+R+     L + ++   L EF   YP + + L 
Sbjct: 67  ERCLQLLAEIEEIDTLFTQQKLQPVGKVRVDMPHSLAREIVVPALGEFYARYPQVTLMLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  I++  +  DC +R  +     +L  R L ++     A+  YL     P S+ EL 
Sbjct: 127 ANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQVTCASADYLARYGVPRSLDELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
            H+++ +  L  + +    +++  +R I       LQVN   + +     G GI   P  
Sbjct: 186 GHHMVGYFSLRTEYLYPLEFMSGDER-ITRMLPGTLQVNGADAYIAGACAGLGIIQAPRR 244

Query: 247 --YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
               + D   LV I+ ++  P+  +Y  Y       G+  A R  +F++  D  F
Sbjct: 245 GLISLLDGGELVEILPEIPPPAMPLYVMY-----TPGRFLAPRIRVFIEWLDELF 294


>gi|296114396|ref|ZP_06833050.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295979157|gb|EFG85881.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 297

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 123/268 (45%), Gaps = 19/268 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSF+  + +   SQ +ISR I+ LE   G  LF R  R L +TE G  L 
Sbjct: 7   LHSFVRVAATGSFSAVSRETGASQPTISRHIALLEAHYGATLFARTTRSLMMTEDGRSLL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV   LET +  L       SG +R+  T   G   L G L + L  +PD+ ++L+
Sbjct: 67  PHAYEVLEILETAETALGRRRASVSGLVRLGITTAFGL-YLTGKLGKLLEEHPDLSVELV 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+  +  D A+R+   I   SLI R+L ++  +  A+  YL     P+  ++L 
Sbjct: 126 MRDGFGDLVEEGLDLAVRV-GSIAEGSLIARRLGSVRRYVVASSDYLARRGTPVHPRDLL 184

Query: 188 KHNLITFG------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            H  I +       D    C  + N +A              + NS  +++Q    G GI
Sbjct: 185 NHPCIAYSYGGSRHDWHFDCKGEENVVAAS---------GPFRANSSEAVLQAVRSGLGI 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTV 269
            +LP + V+++    R++   + P +TV
Sbjct: 236 GMLPSFQVEEDVASGRLIH--LFPEWTV 261


>gi|218709187|ref|YP_002416808.1| transcriptional Regulator [Vibrio splendidus LGP32]
 gi|218322206|emb|CAV18320.1| Transcriptional Regulator [Vibrio splendidus LGP32]
          Length = 294

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 17/273 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  VA    F+ AA+QL  S S +SRQ+S LE  VG+ L  R  R ++LTE G  
Sbjct: 5   EGINEFVAVAECHGFSAAAKQLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTESGHT 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   L+    ++     + SG LR++      +N +   +  F   +PD+ I+
Sbjct: 65  YYQQCKDLVIGLQQANEQVTSQQAQLSGTLRVSAAGAFAENHVAAAMMAFAKDHPDLTIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +   ++   D  D AIR  + +  S L+ RKLV   M A A+ +Y+     P   ++
Sbjct: 125 MNFNTNMVNFIEDGIDFAIRYGR-LDDSGLVARKLVDRPMAAAASQNYIDQFGSPTQPEQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L  H+ I              WL   D +P+   R+    + N+  ++++ C  G GI  
Sbjct: 184 LKWHSCII--------ANSDQWLFEKDGKPLNAVRVHGRWKSNNSSAVLKACEEGLGIVY 235

Query: 244 LPDYIVKD---NPNLVRIMED---VITPSFTVY 270
           LP         N  LV ++E+     T S+ VY
Sbjct: 236 LPKSSFNGGLANGKLVPVLEEYWGAGTSSWIVY 268


>gi|206576830|ref|YP_002238652.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288935617|ref|YP_003439676.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206565888|gb|ACI07664.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288890326|gb|ADC58644.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 303

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 121/248 (48%), Gaps = 5/248 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  V   GSF+  AE++ +S + +   I  LE  +G++L  R  R  +LT+ G  
Sbjct: 5   ESMAVFVRVVDRGSFSAVAEEMRISGTMVGLHIKALEEHLGVRLLNRTTRRQSLTDFGQV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   +E ++ +      KP GKLR+   +  G + L     +FL+ + D+ + 
Sbjct: 65  YYQSCRRILADIEDSESQAFALHQKPRGKLRVGCPVSFGVHALSPVTAQFLIEWTDMAVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L +K +D++ +  D  I++ + +  ++L+ R +        A+P Y+K   EP++ +E
Sbjct: 125 LVLSDKSMDMADEGLDVMIKIGELLHVNTLVARPIAPYRSVMCASPAYIKRAGEPITPEE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  + F   I        W L    +P+  P    +  N+  ++ +  + G GI + 
Sbjct: 185 LCHHRCLGFAHPIAAN----EWTLQREGKPVRAPVNITMTCNNGEALRRAALNGLGIIMQ 240

Query: 245 PDYIVKDN 252
           P+ ++ ++
Sbjct: 241 PEILLAED 248


>gi|260776949|ref|ZP_05885843.1| putative transcriptional regulator LysR family [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260606615|gb|EEX32889.1| putative transcriptional regulator LysR family [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 297

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 17/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +   V  SG F+ AAE L++  + ISR +S +E ++G+ +  R  R + LT++G  
Sbjct: 10  DELEMLLAVVDSGGFSAAAEMLNIQVARISRAVSKVEKQLGVSILNRTTRRVELTQEGRT 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +  H +   + +L   S +P GKLR+        + L   ++ F   YP+I+++
Sbjct: 70  FVDSVRKGLHIIHQAEEDLISGSERPRGKLRVDAASPFVFHQLVPLIQSFKDTYPEIELE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +   +D+     D AIR+ + ++ S+L  R L    +   A+P YL++   P +  E
Sbjct: 130 ITSNEGFVDLLEQRTDVAIRIGQ-LKDSTLHARPLGKSELFIVASPQYLESSGAPRTTSE 188

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H LI F    PK +    W L  VD    EP I+    ++  ++ Q  +  +GIA L
Sbjct: 189 LQSHQLIGFTS--PKVLN--QWPLKGVDAI--EPDITS---SNGETVRQLALASNGIACL 239

Query: 245 PDYIVKDN---PNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++V+++     LV +++D     T    V   Y ++     ++ AF +FI
Sbjct: 240 SGFMVREDIKQGRLVSLLDDAKRLDTGREQVSAVYYKSSAVARRISAFIDFI 291


>gi|229589658|ref|YP_002871777.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361524|emb|CAY48400.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 297

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 122/258 (47%), Gaps = 7/258 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L  + ++++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRYFLELQRSGRLLTAAQRLKTTHATVARHIEAIEKSLGTALFVQHAQGYELTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     + EL  S+  P GK+R+     LG   L   +      YP +
Sbjct: 62  GEALLKHAEAMENVALLAEDELTHSAA-PLGKIRLGVAEGLGVMFLASRMGGLFDRYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P     L+ RKL    +  YA+  YL        
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-SVDQLVTRKLTDYRLALYASRAYLDRNPPIEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H  I + D +    E   +L++  R    P++      S ++  Q    G GIA
Sbjct: 180 REDLAAHAWIDYVDDLLFSQE-LKFLSSFCR---NPKV-VFHSTSVIAQHQAARSGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIME 260
           +LP ++   +P LV +++
Sbjct: 235 VLPCFMAAGDPELVPLLQ 252


>gi|170733835|ref|YP_001765782.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817077|gb|ACA91660.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 320

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 137/291 (47%), Gaps = 22/291 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++A+  S + AA  L LS  + ++++  +E  +G++L  R  R ++LT +G    R  
Sbjct: 14  FILLAKLRSLSGAARALDLSPPAATKRLGVIEQRLGVRLVNRTTRSVSLTPEGEIYLRYA 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S++  ++   + EL      P G LRI  T+  G+  +   + EF   YP +++Q  + +
Sbjct: 74  SQIVGQVREMEEELSGGKGDPQGLLRINATLGFGRTTIAPLVSEFAKRYPSVEVQFEVTD 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+     D AIR  + +  S L  R++++      A+P YL+    P  +++L  H 
Sbjct: 134 RPVDLVEGAFDMAIRFGE-LPDSRLSARRIMSNRRFLCASPKYLEKYGSPERVEDLAAHR 192

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGIAL- 243
            I     I +  +D      V R I    I  ++V   LS      ++++ + G G+ + 
Sbjct: 193 CI-----IHRQNDD---AYGVWRYIVNDHIETIKVKGALSSNDGDIVLRWALEGHGVLIR 244

Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               L  Y+     NLV  + + + PS  +Y  YP     T + +AF +F+
Sbjct: 245 SEWDLAKYLQSGRLNLV--LPNTVLPSADLYVYYPRQKNQTARARAFIDFL 293


>gi|170735495|ref|YP_001774609.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821533|gb|ACA96114.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 301

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 134/304 (44%), Gaps = 22/304 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++ G+
Sbjct: 4   FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V  +L      + +    PSG LR++  +  G   L  ++  F+  +P + +
Sbjct: 64  VYYARAKRVLGELADADALVADRGDAPSGPLRVSVPVAYGLRRLAPHVAAFVARHPKLDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+     D AIRL     ++ ++ R L T   +  A+  YL     P +  
Sbjct: 124 DLQLTDERVDLVSARIDVAIRLGDAAPTADVVARPLGTFRRYVVASRAYLDAHGTPATPG 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------G 238
           EL  H  + F   + +    F         +G  R + + V   L      VL      G
Sbjct: 184 ELVDHACLRFHFGVDQQTWTF---------VGAQRTTQVVVTGRLKSNHSEVLREAALDG 234

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDV-ITPS---FTVYFCYPEALKNTGKLKAFRNFIF 291
           +GIALLPD++V  +     L R+ +   +TP      +   Y    + + ++ AF +F+ 
Sbjct: 235 AGIALLPDWLVDTDLEAGRLQRLFDQYDVTPGSARAVITALYLPNQRGSKRVTAFIDFVE 294

Query: 292 LKAR 295
             AR
Sbjct: 295 SLAR 298


>gi|118592819|ref|ZP_01550208.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
 gi|118434589|gb|EAV41241.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
          Length = 305

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 16/307 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D +R F  V   GS + AA +L++S+S +SR+I+ +E  +G +L  R  RG+  TE 
Sbjct: 2   IDLDDMRCFVEVVDCGSLSAAATRLNISKSVVSRKIARIEDLLGTRLLDRTTRGIAPTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +    +  +  + E T   + E S +  G+LR++  +  G   L   L      YP +
Sbjct: 62  GLEFKSRSERILLEYEETLEAISEHSNEIVGELRLSVPLAFGTRHLGPVLASLACRYPRL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     ++ +D+  +  D  IR+   ++ SS I RK+  I     A+P YL+    P S
Sbjct: 122 KVDASFSDRVVDLIGERFDAVIRIGH-LRDSSYIARKIAPISSIVVASPTYLERNGTPQS 180

Query: 183 IQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L  H+ LI    L P  +          RP G      L+ ++  + + + V G GI
Sbjct: 181 PEDLTAHDCLIYTAALSPDWVFQSGNRKISVRPSGR-----LRTDNGDTTVAWAVAGLGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF------L 292
           A  P ++V    +  +LV ++ D  TP   +Y           K++   + +       L
Sbjct: 236 AHAPLFLVNEAVERGDLVPLLLDYPTPEVGLYVLRAPGANTPRKVRVLIDALVENVSGKL 295

Query: 293 KARDWKF 299
              DW +
Sbjct: 296 NWADWTY 302


>gi|160873375|ref|YP_001552691.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160858897|gb|ABX47431.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315265603|gb|ADT92456.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 307

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 132/288 (45%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SFT A+  L LS++ +S  ++  ET +G +L  R  R + LT+ G   +
Sbjct: 8   MQIFMRVAELQSFTQASVSLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLTQDGQSCY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +   Q  + + SG+LR+  +  + +NL+   L EF+  YP I+++L 
Sbjct: 68  ERCKSLLAEFQELESLFQLQAEQVSGRLRVDMSTGIARNLVIPKLAEFIEQYPHIELELS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC IR+   +Q   LI +KL    M    +P Y+     P SI +L 
Sbjct: 128 STDRKVDVIAEGFDCVIRVGS-VQQEGLIAKKLGHFKMQNCVSPAYIAQYGRPESIADLT 186

Query: 188 KHN--LITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            HN  L+ +   +      F + A         I  P++  + VN+  +    C+ G GI
Sbjct: 187 LHNHKLVHYVSQLGGTDSGFEYQAPHTHQGSLTIQLPKL--ITVNNADAYSSACLAGLGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +P   V        LV I+ +   P   V   YP     + +L+ F
Sbjct: 245 IQVPSIGVAKYLHTGELVEILPNYPAPPMPVSLLYPHRRHLSKRLQVF 292


>gi|71280634|ref|YP_269388.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71146374|gb|AAZ26847.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 294

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 127/277 (45%), Gaps = 18/277 (6%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR   +F  +A  GSFT  AEQ++ S+S IS++IS LE ++G +L +R  R + LT  
Sbjct: 2   DKLRAIQLFVRLADLGSFTRVAEQVNSSKSMISKEISRLEADLGTRLLHRSTRSVQLTHV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +   E+  KL+     +Q+      GKL+I   + LG   L     +F+   P+I
Sbjct: 62  GEGYLQRAREILSKLDDADNFVQDLQQNLRGKLKINAPMALGITDLSHLFADFMKANPEI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +D+     D   R       S+ + R L         +P YLK       
Sbjct: 122 ELDIHLGDESVDLVEQGFDLGFRASSQPIDSNYVGRPLTRFTYKVCVSPDYLKMHSTITH 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSG 240
            ++L +HN   +     K +    W      PI  G      L+VN+ + +M+    G G
Sbjct: 182 PRDLKEHNCFIYSYFQGKNV----W------PIEGGIEVKGSLRVNNTMFMMESIKQGLG 231

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274
           I  +PD++ +   N   +V ++ D      T+Y  YP
Sbjct: 232 IGFIPDFVCQQAINSGQVVEVLADSKKSMLTLYALYP 268


>gi|126443487|ref|YP_001063973.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126222978|gb|ABN86483.1| transcriptional regulator [Burkholderia pseudomallei 668]
          Length = 313

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA+ LHL+QS+IS+QI  LE  +G  LF RHARGL LT +G  LH
Sbjct: 13  LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T   +  L  T  +L      P   L+++         L   L EF  L+P   ++L 
Sbjct: 73  EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
            +   ID   +S D  D AIR   P    +L    L    + A AAP YL
Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYL 177


>gi|315181784|gb|ADT88697.1| transcriptional regulators, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 310

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 6/180 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V R GSFT AA    +  S++S+QI  LE  +G++L  R  R ++LT  G ++
Sbjct: 6   QLSLFVDVVRQGSFTKAALLHDMDNSALSKQIKKLEQSLGVQLLNRSTRTISLTPVGEQI 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +   L   Q   +   + PSG ++IA     GQ  LQ  L  F+  YPD+++ L
Sbjct: 66  YQQAQVLEDTLNNIQRIAETHQLTPSGSIKIAAPNYFGQRYLQPVLDAFIGKYPDVELTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-----VTIHMHAYAAPHYLKNCREPL 181
           ILD+K  DI  D  D AIR+ K +  S+LI +K+     V I  + + A H L    E L
Sbjct: 126 ILDDKRADIIADKFDVAIRIGK-LADSNLIAKKITNTNFVLIASNDFVAKHGLPQSPEAL 184


>gi|28558879|ref|NP_788139.1| putative transcriptional regulator [Ruegeria sp. PR1b]
 gi|22726430|gb|AAN05225.1| RC152 [Ruegeria sp. PR1b]
          Length = 306

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 131/298 (43%), Gaps = 15/298 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V    SF  AA  L ++ +SI+R ++ LE ++G +L  R  R ++LT  G+ + 
Sbjct: 7   IRVFLEVVAQDSFIGAARSLRMTPASITRIVAQLEEDLGQQLLTRTTRQISLTGAGALVA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V    +    E+  ++    G+L +   +  G  LL G +  F L YP IQ+ + 
Sbjct: 67  ARYRPVLEDFDRVTQEITSATHPDRGRLSLNAPLSFGMRLLPGLIDSFRLAYPQIQVDVQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI  +  D AIR+  P    S I R++  +     A P        P +  ELD
Sbjct: 127 LTDTLVDIIDESCDLAIRISGPPTDKSTIWRRICMVPRAIVAGPALFDRISVPQNPDELD 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            ++ +++G   P+  + F         IG  R     + +  N+   ++     G+G+  
Sbjct: 187 PNHCLSYGTGKPETWKMFR--------IGTARTFRAGTEIVSNNGELLLALAAAGNGMVN 238

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LP ++V+D  N   +V ++ D       +   YP        +  F +F     RD++
Sbjct: 239 LPRFLVQDAINKKKVVEVLPDWDLSPLNLMLYYPPYDALPPLIATFSDFFEAYIRDFE 296


>gi|116049912|ref|YP_791279.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585133|gb|ABJ11148.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 311

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E  +  + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +   R 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGHR- 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIM 232
            L   E D  +L   G +      D    AT+  P G       EPR   L V+ ++   
Sbjct: 180 -LEHPE-DLEDLPFLGAI----HNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVLRK 230

Query: 233 QYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  V G G+ LLP+ Y  ++  + +LVRI+     P  T+   Y   L  + ++ A R  
Sbjct: 231 KAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIRAL 287

Query: 290 I 290
           I
Sbjct: 288 I 288


>gi|325121821|gb|ADY81344.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 301

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 131/262 (50%), Gaps = 16/262 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+  A    ++ S++S+ IS LE  +G++L  R  R   LT +G + 
Sbjct: 11  ELAIFIRVVELGSFSAVARACDMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +    ++ + L+    EL++S      P G++RI T+     + L   +  F   YP I+
Sbjct: 71  YEQGIQILNNLD----ELEQSVTANHMPQGRIRIHTSFSYWTHFLLPCISLFNERYPQIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  L ++ I++     D AIR   P++SS+L+ R L +   H   +P Y++    P   
Sbjct: 127 LEAHLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTQKHYVCSPTYIEKNGYPQHP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L +H L+     +    ++  WL    D+ I       L+VN   +I+Q  + G+GIA
Sbjct: 186 EQLYEHQLLD----VSYQRQNKTWLFKKDDQEITLAPTKVLRVNHGEAILQLALAGAGIA 241

Query: 243 LLPDYIVK---DNPNLVRIMED 261
            L  + VK   +   LV+I+ED
Sbjct: 242 QLNQFQVKKALEQKQLVKILED 263


>gi|301025851|ref|ZP_07189341.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|331675011|ref|ZP_08375768.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
 gi|300395817|gb|EFJ79355.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|331067920|gb|EGI39318.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
          Length = 323

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR     +   +I R L  + +   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIRTGASPE-DGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLIYPQRRELSRRVNLFMQWL 314


>gi|195873787|ref|ZP_02698999.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|204928657|ref|ZP_03219856.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205359577|ref|ZP_02830572.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205360334|ref|ZP_02682632.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|195632270|gb|EDX50754.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|204322090|gb|EDZ07288.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205344560|gb|EDZ31324.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350333|gb|EDZ36964.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|320088026|emb|CBY97788.1| probable RuBisCO transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 300

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 8   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 68  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 187 SHAVVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI   P   V++      L+ I+         V   YP
Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275


>gi|323525206|ref|YP_004227359.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382208|gb|ADX54299.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 308

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 136/289 (47%), Gaps = 13/289 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  +G+F  A+E + ++   +SR I+ LE  + I+LF R  R ++LTE+G + +  
Sbjct: 14  VFAAVVDAGTFAAASEVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVSLTEEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE         +    GKLRI     + + +L   L  F+  +P++ I+ I  
Sbjct: 74  VMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRTILGQPLDAFMDAHPELDIECIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187
           +   D+ MD  D A+R  +P ++S+LI RKL+   +   AAP Y+     P   + L+  
Sbjct: 134 DSLGDLVMDGFDLAVRFGEP-RASTLIARKLLDTPIVTVAAPSYVARHGRPAKPEGLESR 192

Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA--- 242
            H  + F +  P+  + F W       R + + R   L VN   +++  C+ GSGIA   
Sbjct: 193 SHRCLEFRN--PETGKPFQWEFHRRRKRLVVDTR-GRLTVNDPGALLNACLAGSGIAQML 249

Query: 243 -LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  + ++ D   L+ +  +     + +Y  YP       K +AF +FI
Sbjct: 250 LLGAEPLIADG-RLINLFPEWTDERYPLYAYYPSRHHVPAKTRAFLDFI 297


>gi|269959929|ref|ZP_06174306.1| Transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
 gi|269835228|gb|EEZ89310.1| Transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
          Length = 295

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 33/288 (11%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +L+ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVNSYIRVVEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYERAKVQLDSWQSVLDETRSVNESPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLI--LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           I++QLI  L  +  ++S+D      R  + + S S     L       YAAP YL+    
Sbjct: 121 IKLQLITTLPGQIPELSLDL--FISRELEQLNSLSFKASPLFEHKAQFYAAPSYLEKHGT 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISC---LQVNSYLS 230
           P SI+EL +HN++ +G                ++P+ E       R+S        +  +
Sbjct: 179 PQSIEELSQHNVLIWG----------------EKPVREIKTNRGKRVSLSGNFATTNPEA 222

Query: 231 IMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           +      G GI L  + ++K++     LV I+ D+     TVY  YP+
Sbjct: 223 LFHGAKRGMGILLSNNVMIKEDLRSGALVPILPDITADEATVYAYYPK 270


>gi|260778094|ref|ZP_05886987.1| transcriptional regulator LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260606107|gb|EEX32392.1| transcriptional regulator LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 302

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 138/300 (46%), Gaps = 19/300 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M ++ + L +F  V  +GS + AA++L   +SS+SR I+ LE  + IKL  R++R L LT
Sbjct: 1   MDWNLNDLPIFIAVTETGSVSKAAKRLGNQKSSVSRAINRLEESLNIKLLERNSRHLNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L+     +   L  + I+ Q  S    G LRIATT    + +L  NLK F   YP
Sbjct: 61  SDGEQLYNQLKPLMQNL--SAIKEQVPSQSLCGTLRIATTFAFSREILSPNLKAFTERYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ+ +   +    +  D  D AI+L   +  S    ++L  + +  +  P YL      
Sbjct: 119 DIQLSIRSMSHRAHLLEDKLDLAIQL-GDLAPSGFYAKRLTVVKLLWFCTPEYL------ 171

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL------QVNSYLSIMQY 234
           L+  EL    L T    +    E  N  + +   + +     +      Q++  L +   
Sbjct: 172 LANPELQSATLETLQQHVSFYHEQENNQSVLYSTMTDGSKQTIEFKHANQLDDVLLVRDM 231

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              GSG++LLPD   +    +  LV+I  ++ + P   +   Y     ++ +LKA  NF+
Sbjct: 232 VASGSGVSLLPDIYCRQLCRDGKLVQIAHELNVLPHVNISAVYASKTTHSPRLKAMLNFM 291


>gi|254486690|ref|ZP_05099895.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214043559|gb|EEB84197.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 301

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 142/286 (49%), Gaps = 11/286 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V ++ SF  AA  L ++ S++S+Q+  LE ++ +KL  R  R +++TE+G+  
Sbjct: 6   RVGVFIAVVKAQSFAGAARSLGITSSAVSKQVQNLEQDLQVKLLNRTTRNVSVTEEGAVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +     L+  Q ++ E   +P G L+I+  + LG       +  F   YP++ + +
Sbjct: 66  YEGAARALEDLQEAQEQIYELKSRPRGPLKISFPLSLGNKYFGQAIASFAAQYPEVDLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD + +DI  +  D A+R+   ++ +SL+ R++ +      A+  YL+    P +  +L
Sbjct: 126 SLDERFVDIVNEGFDLAVRI-GSLKDTSLVARRMASCPFVICASAGYLETHGTPQTPGDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             HN++ F       + ++ +     + IG+  +    + +S   +    + G GIA+LP
Sbjct: 185 ADHNVLAFTG--NSGLHEWRYQDATGQ-IGQVSLRGNFKADSGEILCSAALQGVGIAILP 241

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCY-PEALKNTGKLKAF 286
            + V  +     L  ++ D +T P   +Y  + P   ++T +L+ F
Sbjct: 242 VFYVAKHLKTRKLQAVLPDYVTSPKRDIYAVFQPNRFQST-RLRLF 286


>gi|167588545|ref|ZP_02380933.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 299

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 121/283 (42%), Gaps = 6/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+ +R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  TE 
Sbjct: 5   LNWELIRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTEA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              L      +       +          SG +RI+ +  +G  +L   L +    +P +
Sbjct: 65  ALALRGHAETLRSAAAAFERAAASHGAGVSGVVRISASDVIGVEVLPPMLTQLRRDHPGL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L   ++  D+    AD A+R+  P Q  +L+ R++  I +  YA   YL     P +
Sbjct: 125 VVELAPTDRIQDVLNREADIAVRMAPPAQ-DALVARRIGNIELGMYARDDYLAEHGAPAT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H LI F  + P     F   A    PI       L+ +S L+ +     G GI 
Sbjct: 184 LAELAQHALIGFDAMTP-----FLRAAAHALPIWNRDAFALRTDSNLAQLALIRAGYGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +    + K +  LVR++ D +      +    E L+ + + +A
Sbjct: 239 ICQTALAKRDARLVRVLPDQVVLPLETWVVMHEDLRASPRCRA 281


>gi|313111304|ref|ZP_07797122.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310883624|gb|EFQ42218.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 311

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E  +  + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +   R 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGHR- 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIM 232
            L   E D  +L   G +      D    AT+  P G       EPR   L V+ ++   
Sbjct: 180 -LEHPE-DLEDLPFLGAI----HNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVLRK 230

Query: 233 QYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  V G G+ LLP+ Y  ++  + +LVRI+     P  T+   Y   L  + ++ A R  
Sbjct: 231 KAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIRAL 287

Query: 290 I 290
           I
Sbjct: 288 I 288


>gi|310766950|gb|ADP11900.1| Uncharacterized HTH-type transcriptional regulator yhjC [Erwinia
           sp. Ejp617]
          Length = 301

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 101/191 (52%), Gaps = 14/191 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V    SFT AA+ L + + ++S+ I  LE ++G+KL +R  R L++T +G      
Sbjct: 11  IFVHVVDLHSFTKAADTLQMHRPAVSKSIQQLEDDLGVKLLHRTTRSLSVTAEG------ 64

Query: 70  TSEVYHKLETTQIELQE--SSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             E+Y + +T   ++ E  +SV P+    G+LRI   + L   +L  +L EF  LYP I+
Sbjct: 65  -DEIYQRAKTLLNDVNEMMASVSPTQPPRGRLRIDAPLALTHAILIPSLGEFQALYPQIE 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L   ++  D+  +  DC IRL + +  SS I R++  + M   AAP YL     P++ 
Sbjct: 124 IVLTASDRLTDLVSEGIDCVIRLGE-LVDSSFISRRVGNVRMTTCAAPSYLDKYGTPVTP 182

Query: 184 QELDKHNLITF 194
            +L  H  I F
Sbjct: 183 DDLVHHKAIHF 193


>gi|289667709|ref|ZP_06488784.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 321

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 133/283 (46%), Gaps = 21/283 (7%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G+ +HR    +  + 
Sbjct: 5   GGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVGTSVHRHAQTMLAEA 64

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           +  +  +   S +P G +R++  + L Q  L   L +FL  YP +++QL + N+ +D+  
Sbjct: 65  QAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPQFLAKYPKVRLQLNISNRRVDVIN 124

Query: 138 DYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGD 196
           +  D A+R+R  +    SL+ R    +     A+P YL     P    EL  H  ++  +
Sbjct: 125 EGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRTGRPKDPSELANHTTMSTSE 184

Query: 197 LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSGIALLPDYIVK 250
                 ++ +    +  P GE R   LQ    L+   + +L      G GI +LP+ +  
Sbjct: 185 ------DEAHQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMARDGFGITMLPETVCA 236

Query: 251 DNPNLVRIME-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
           +    VR  E +V+ P +++    C+       G L A R FI
Sbjct: 237 EA---VRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 276


>gi|218702286|ref|YP_002409915.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|331659828|ref|ZP_08360766.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA206]
 gi|218372272|emb|CAR20135.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|315295795|gb|EFU55112.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
 gi|331053043|gb|EGI25076.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA206]
          Length = 323

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L 
Sbjct: 91  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR     +   +I R L  + +   A+PHYL     P S  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIRTGASPE-DGVIARPLGKLTVVNCASPHYLTRFGYPQSPDDLA 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|218677013|ref|YP_002395832.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
 gi|218325281|emb|CAV27279.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 299

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 138/303 (45%), Gaps = 33/303 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA   SFT AAE L +S+  +SR +  +E  +  +L +R  R ++LT  G    
Sbjct: 8   MRSFVEVANCASFTQAAEHLDMSRLQVSRHVQEIEGWLKQRLLHRTTRKVSLTAAGEIAL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++     +   SG +RIA  I L QN+L   +++F  L+P+I ++L 
Sbjct: 68  QRCEKILHETAELEVTSLNQTDDLSGVIRIAAPIGLTQNMLLDVVEQFTELHPNITVELF 127

Query: 128 -------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
                  L ++ IDI++ Y D      +P    SLI RKL+ I     A+  YL    EP
Sbjct: 128 ASDRFAQLVDERIDIALRYTD------QP--DDSLIARKLMEIDSVVCASQDYLDKHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +++ L +HN         + +    W    D       +S  ++ N    + +    G 
Sbjct: 180 ETVEALRQHNCF-------RHLSVSKWDFVKDNQHYSVEVSGTIKANDVGVLTRAAQHGK 232

Query: 240 GIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  LP  +   NP      L RI++D ++PS  ++  Y   L  + +L   R FI   A
Sbjct: 233 GIVRLPCDLA--NPLIAGGKLKRILDDFVSPSSVLWAVY---LSRSYQLPIVRQFIDFAA 287

Query: 295 RDW 297
             W
Sbjct: 288 EVW 290


>gi|254255376|ref|ZP_04948692.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124901113|gb|EAY71863.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 305

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 134/291 (46%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   
Sbjct: 6   SMRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  V  +++  +  + ++   P G+L++     + + ++   L  FL  +P I I+L
Sbjct: 66  YERSVAVLREIDDMEASVSQARNVPRGRLKVNLPPAMAKQVVVPALPAFLDAHPGIMIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ ID+  +  DC +R+   +  S +I +++ ++      +P Y +   EP ++ +L
Sbjct: 126 GVTDRQIDLVGEGVDCVVRI-GALDDSGMIAKRIGSLTTCTCGSPGYFERFGEPQTVDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
            +H  +    +         W   VD   GE RI      + VN   + +   V G G+ 
Sbjct: 185 AQH--VAVSHISADTGRPRAWDYVVD---GETRIVQMCGTVAVNDADNYIACGVAGIGLI 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               Y+V+    +  L  ++ D   P+  +   YP       KLK F +++
Sbjct: 240 KTSLYLVEPYLQSGRLREVLTDFNAPARPISVLYPPNRHTPVKLKVFVDWL 290


>gi|254437458|ref|ZP_05050952.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198252904|gb|EDY77218.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 310

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 136/295 (46%), Gaps = 28/295 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++  F  +  +G+ T A+ +  L+ S++SR++  LE  +G  L +R  R  +L+ +G  
Sbjct: 5   DEIETFVAIVDAGTLTEASRRSGLALSAVSRRLRDLEARMGTTLIHRSTRTFSLSSEGQD 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   L+  + +L+++  + +G++RIA  +      L   L EF+ L+P+++I 
Sbjct: 65  FYLRCKQILSDLQEAETDLRDTKGRITGRIRIAAPLTFSVLHLSPILNEFMTLHPEVEID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L ++++ +D+  +  D AIR+ + +  SS + ++L  I      AP  ++   +P   ++
Sbjct: 125 LDVNDRQVDLVAEGFDLAIRIGR-LSDSSFLAKRLTRIRHVPTVAPSLIERLGQPERPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L     +T+    P     F       RP G  R   + V   L+      +    + G 
Sbjct: 184 LTDFPALTYRSSGPGTEWRFV------RPDG--RKGSVTVKGTLACNNGDVLRSAAIAGL 235

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSF--------TVYFCYPEALKNTGKLKAF 286
           G+A  P +I         I++ ++TP F          Y  +P     T +++A 
Sbjct: 236 GVAFEPTFICGPA-----ILDGLLTPLFFDHTWSENAAYAVFPPGRAQTARVRAL 285


>gi|293607528|ref|ZP_06689863.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292814099|gb|EFF73245.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 310

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 15/290 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  + +F  A+E L +S   +SR I+ LE ++ I+LF R  R ++LTE+G + +  
Sbjct: 14  VFAAVVDAKTFAAASEVLGMSPPGVSRAIARLEEKLKIRLFNRTTRSVSLTEEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE         +    GKLR+       + +L   L EF+  +P+++I+ I  
Sbjct: 74  VMPHLAGLEEAAAAAAGGASAVRGKLRVNLDPVFYRIILGQRLNEFMDAHPELEIEFIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   D+ MD  D A+R  +P ++S+LI RKL+   +   AAP Y+     P   +EL+  
Sbjct: 134 DSLGDLVMDGFDLALRFGEP-KTSTLIARKLLDSGIVTVAAPSYIARWGRPAKPEELESG 192

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSGIA-- 242
           N        P+  + F W     R     RI       L VN   +++  C+ G G+A  
Sbjct: 193 NHRCLEFRNPETGKPFPWEFHRRR----KRILVDTQGRLTVNDPSALLNACLAGFGVAQM 248

Query: 243 --LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             L  ++++ +   LV +  +     +  Y  YP       K +AF +F+
Sbjct: 249 LVLGAEHLIAEG-RLVNLFPEWTDERYPFYAYYPSRHHMPAKTRAFLDFV 297


>gi|86358410|ref|YP_470302.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282512|gb|ABC91575.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 300

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 32/305 (10%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G F+ AA    ++ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERGGFSAAATARRMTPSAVSKLVARLEARLGARLVNRSTRKLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +  +  +   +   + E Q SS  + SG++RI T+   G ++L   +  F+ L+  + + 
Sbjct: 71  YERSIAILADI--AEAERQASSGEQASGRIRINTSGSFGNHVLAPLVPAFMALHSAVTLD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  + AD AIR   P+++SSLI RKL        A+P Y+    EP S+ +
Sbjct: 129 ITHTDRIVDLMEERADVAIRT-GPLKNSSLIARKLGATGKLIVASPDYISRHGEPRSVAD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD----RPIGE----PRISCLQVNSYLSIMQYCVL 237
           L +H           C   F++   V+    R  GE    P    +QV    ++    + 
Sbjct: 188 LSRH-----------CRIGFSYARAVEGWPLREDGETVTVPITPGVQVGDGEAMRHLALS 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+G+A L  + V+   D  +LV ++E      I   + VY      L   G+++A  +F+
Sbjct: 237 GAGLARLAAFTVRADIDAGHLVPVLEAANPGDIEEFYAVYMGQGGPLP--GRVRALLDFL 294

Query: 291 FLKAR 295
               R
Sbjct: 295 VKHVR 299


>gi|88859450|ref|ZP_01134090.1| Transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
 gi|88818467|gb|EAR28282.1| Transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
          Length = 299

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 87/148 (58%), Gaps = 2/148 (1%)

Query: 1   MSFDW--DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M F++  D +R F  VA+ GSF  A+  L +  S++SR+++ LE ++ I+L  R A  + 
Sbjct: 1   MKFNYSLDDMRCFCAVAQYGSFKQASAALEIPLSTLSRRVAKLEEDLAIRLLNRDAHRVQ 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT  G + ++ ++ ++ +LE   + LQ+   +  G +RI+  ++ G ++L  +   FL+ 
Sbjct: 61  LTHSGQRYYQRSASLFEELEDVAVCLQQDKTQAKGTIRISAPVNFGVHVLAQHFNAFLIE 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRL 146
           YPDI + L L N++IDI  +  D A R+
Sbjct: 121 YPDIHLDLRLSNQNIDIEEEAIDIAFRV 148


>gi|325526806|gb|EGD04305.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 288

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 134/291 (46%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +  SGSFT AA+QL + ++S ++ +  LE  +G +L  R  R ++ T  G+  +
Sbjct: 1   MRLFTCIVDSGSFTRAAQQLGMQRASATQIMKQLEAHLGARLLVRTTRHVSPTLDGAAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   ++  +     ++  P G L++       + ++   L +F   YP + + + 
Sbjct: 61  QRCVDILDGIDEAEASFSHAARHPQGALKVDLASSFARLVVIPALPDFFARYPQVTLDIS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D++ +  DC +R+ + +  SSL+ R++  +     A+P YL     P ++  L 
Sbjct: 121 IGDRRVDLARESVDCVVRIGE-LTDSSLVARRVGMLEQVTCASPGYLARYGRPRNLAALA 179

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           KH  + +     G  +P        + T + P      + + VN+  + +  C  G GI 
Sbjct: 180 KHREVAYVSASSGKRVPLVFSVDGRVETRELP------ASVSVNNGDAYVAACEAGLGIV 233

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P Y V        L  I+  V  P   +   YP     + +L+ F +++
Sbjct: 234 QVPRYHVVGQLQRGTLTEILTRVRPPPLPLSVLYPHRGHLSPRLRVFIDWV 284


>gi|260599102|ref|YP_003211673.1| hypothetical protein CTU_33100 [Cronobacter turicensis z3032]
 gi|260218279|emb|CBA33234.1| hypothetical protein CTU_33100 [Cronobacter turicensis z3032]
          Length = 308

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 142/299 (47%), Gaps = 27/299 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            +L +F  V  + SFT AA  L  +++ +S  I  LE+E+G+ L  R  R LTLT+ G +
Sbjct: 12  SRLAMFVAVVDAKSFTGAAAALGQTKAVVSFNIRQLESELGVTLLLRSTRRLTLTDAGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++ +  +         ++Q S    SG+LR+ TT +   +++   L  F   +P ++I+
Sbjct: 72  LYQRSLLLLRNAGELLEDVQASHEGFSGELRVTTTPEYASHVVGPALAAFSRAHPALRIR 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++  D+  +  D AIRL   +Q S+     +    +   A+P +L+  R P+S  E
Sbjct: 132 HFSSSQHADLISERVDVAIRL-GTLQDSAYRAALISRFDIFPVASPAWLE--RHPISTPE 188

Query: 186 -LDKHNLITFGDLIPKCMEDFNWLAT----------VDRPIGEPRISCLQVNSYLSIMQY 234
            L +   +       +      W  T          + RP   P I+    +   ++M +
Sbjct: 189 ALSQAQWLVH----TRLASPLRWALTGPHDETLWFEITRP---PAIAA---DGAGALMSF 238

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G G+ALLP ++V    +   LVR++     P+  VY  YP+A   +GK++ F +F+
Sbjct: 239 ALEGCGVALLPAWLVNTALEEGKLVRLLPAYRFPAQGVYAVYPDARHVSGKVRGFIDFL 297


>gi|157373290|ref|YP_001471890.1| LyrR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157315664|gb|ABV34762.1| transcriptional regulator, LyrR family [Shewanella sediminis
           HAW-EB3]
          Length = 301

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 142/294 (48%), Gaps = 22/294 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GS T AA +L +S+S +S+ +  LE     +L +R  R + LTE G   
Sbjct: 10  RMLVFANVVEQGSLTAAANELGISRSMVSQHLKKLELRCATQLIHRTTRKMALTEDGQSF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPS-----GKLRIATTIDLG-QNLLQGNLKEFLLLYP 120
           +   +E+    +       E+S KP      G ++I+  + LG QNL+Q ++ +F   YP
Sbjct: 70  YHYCAELLQLAKQA-----ENSTKPQDRELQGSIKISAPVCLGEQNLIQ-HIGDFNKRYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I L L+++ +++  +  D AI+  +  + +S+   +L     +  A+P Y++    P
Sbjct: 124 KIRITLRLEDRRLNLLENNIDIAIQTEQATEFTSI---RLGQFDEYLIASPEYVEQHGSP 180

Query: 181 LSIQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L    L KH  ++   + +PK     N      +    P ISC   NS   I++    G 
Sbjct: 181 LHPDMLAKHQWIMQSSNYLPKSCLLQNSFGDKFKIKINPFISC---NSNHGIVKLAKQGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+LP Y+V+   ++   V I+ D       +Y  +P       +++AF NFI
Sbjct: 238 GIAILPSYLVQAQIESGKFVHILPDYHLREGVIYAVHPFDDVTPPRVRAFLNFI 291


>gi|254240977|ref|ZP_04934299.1| hypothetical protein PA2G_01658 [Pseudomonas aeruginosa 2192]
 gi|126194355|gb|EAZ58418.1| hypothetical protein PA2G_01658 [Pseudomonas aeruginosa 2192]
          Length = 305

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 123/269 (45%), Gaps = 9/269 (3%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    +    +   LE     L 
Sbjct: 29  QMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYRQRLERILDDLEAADAALT 88

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
                PSG LR++  + L    L   +  FL  YPD++++L+L +   D+  +  D A+R
Sbjct: 89  SMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELLLQDGRQDLIAEGIDLALR 148

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
               +  S L+ R L+ +     AAP YL    +PL  + L +H  I F           
Sbjct: 149 GSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALREHECIRFS----LSGHAD 204

Query: 206 NWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMED 261
            W     R  I  P     +V+S L++    + G G++L+P   V+       LV ++ D
Sbjct: 205 RWTFRKGRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPRLYVQAELAEGRLVELLAD 264

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                  ++  YP + +  GK + F +F+
Sbjct: 265 WKADETAIHAVYP-SRQLAGKTRVFLDFL 292


>gi|87120661|ref|ZP_01076554.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86163889|gb|EAQ65161.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 300

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 145/282 (51%), Gaps = 13/282 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  + +      AA +L++S ++I+R++  LE  +  +L +R AR   LT +G 
Sbjct: 2   YDDLNLFIQIVQHQGLAKAATKLNMSAATITRRLQKLEQTLNTQLVHRSARQFVLTPEGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    ++ +LE ++  L   S +  G L++ T  ++    LQ     F+  YPDI++
Sbjct: 62  TYYQTYEPIFEQLEASKNALDMESQETCGSLKVFTPTNISLGFLQPMWSAFIKQYPDIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L+N+  D+    AD A+R+  P   S L Q+KL ++     AAP YL    EP +++
Sbjct: 122 ELQLNNQREDLLAAKADIALRI-GPQSDSQLYQKKLGSLSTLFVAAPSYLTLKGEPQTLE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++H L+    L P      N ++T    +  P+IS L  N    I  +   G GI+LL
Sbjct: 181 ELEEHTLLATHTL-PNW--QLNQISTGRSCVYHPKISTL-TNDISLITHFVCDGLGISLL 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           P    +D   +  +V++++D   P   ++     A+ +TG+L
Sbjct: 237 PINEARDHLASGRIVQVLKDWKGPERELF-----AVWSTGRL 273


>gi|209518365|ref|ZP_03267189.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501184|gb|EEA01216.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 305

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 1/192 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F  +  SGSF  AA  + + Q ++S+QI+ LE  +G +L  R +R +TLTE G  
Sbjct: 5   DALKLFIRIVESGSFAAAARDMGVGQPAVSKQIASLERYLGAQLVRRTSRSMTLTETGQS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +       +  +    V P+G +R+      G+  +   L  F   YP + + 
Sbjct: 65  VYEAGLRIIGDFTELESSVGHGQVSPAGLVRVTVAPVFGRLYVVPRLPAFFSRYPHVSVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L    +++++  +  D +I+   P+  SS+I R L +  +   A P YL+    P   Q+
Sbjct: 125 LSATERNVNLVEEGFDLSIK-SGPLADSSMIARHLASSPVVVVATPDYLEKYGRPERPQD 183

Query: 186 LDKHNLITFGDL 197
           LD+H  + F  +
Sbjct: 184 LDRHACVVFAPM 195


>gi|186472197|ref|YP_001859539.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184194529|gb|ACC72493.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 308

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +G+F+ AA QL  + S++SRQI  LE  +G +L  R  R + +T+ G++++
Sbjct: 13  MATFARVVDAGNFSEAARQLGSTPSTVSRQIKRLEESLGTRLLERSTRRIRVTDAGAQVY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++            +S  +P GK+ I+  I   ++++   + EFL  +PD+ +QL+
Sbjct: 73  RYCRDIVGAASGAVDVAGQSVGEPRGKVSISAPIAFARSVIHPLIPEFLRSWPDVDVQLV 132

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++++D   D  D  IRL R P     L  R+L T+     A+P YL     P   ++L
Sbjct: 133 FADREVDPLRDDVDIVIRLTRSP--PLGLAARRLGTVRWLLCASPAYLDAHGTPAEPRDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            +H  +  G+ +    +D  W
Sbjct: 191 ARHECLYLGETV----DDNRW 207


>gi|27380654|ref|NP_772183.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27353819|dbj|BAC50808.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 286

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 19/293 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  LR+F  +AR G+   AA ++  +Q ++ R++  LET +G  LF R A G  LT++
Sbjct: 4   MDWSDLRIFLAIAREGTLGAAARKIGQTQPTMGRRLRALETALGQTLFQRTADGFVLTDE 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ + R    +  +    +     +  +  G LR++++   G  +L   +  F   +P +
Sbjct: 64  GTAVLRHAERIEEEALALERHATGAETQLDGLLRLSSSDWFGTVMLSPVIAAFGKRHPKV 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+ D +   +    AD   R+ KP     +I RKL+ I    Y      K  + P +
Sbjct: 124 TVELLTDARLYSLPRREADLVFRI-KPFSEPEVISRKLLHIPYALYGK----KGSKPPRA 178

Query: 183 IQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
                   +I    F D     M D  WL  V      PR     + N+  +  + C  G
Sbjct: 179 GDGSGVRVVIMNAEFAD-----MPDAVWLKRV-----LPRAEIASRSNNRQAQAELCAGG 228

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           SG+A+LP  +   +  LV +      P    +  Y   LK  G+L+A  + + 
Sbjct: 229 SGLAVLPRPLGDRDRRLVALDIGSTPPGRDTFVGYHRDLKRLGRLRAMLDLVI 281


>gi|53716359|ref|YP_105184.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|124382889|ref|YP_001025559.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|254359358|ref|ZP_04975630.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52422329|gb|AAU45899.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|148028545|gb|EDK86505.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|261827027|gb|ABM99766.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 315

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA+ LHL+QS+IS+QI  LE  +G  LF RHARGL LT +G  LH
Sbjct: 15  LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T   +  L  T  +L      P   L+++         L   L EF  L+P   ++L 
Sbjct: 75  EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 130

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
            +   ID   +S D  D AIR   P    +L    L    + A AAP YL
Sbjct: 131 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYL 179


>gi|77463520|ref|YP_353024.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462376|ref|YP_001043490.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|77387938|gb|ABA79123.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
 gi|126104040|gb|ABN76718.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 297

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 130/271 (47%), Gaps = 12/271 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  VAR+ S + A   L L  +++ R+I+ LE  +G+ LF +  +G  LTE 
Sbjct: 1   MDWDDLRIFLGVARAESLSGAGRGLRLDPATVGRRIARLEEALGVPLFAKSPQGYALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L          +     +LQ  +   SG++RI         LL   L +     P +
Sbjct: 61  GQRLLAHAERAEQAVGEAAEDLQ-GAAGLSGQIRIGAPDGCANYLLPQVLAQICTDNPGL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q++   +  ++S   AD AI + +P ++  L  +KL    +H  A+  YL       +
Sbjct: 120 EVQIVALPRVFNLSKREADLAIGVSRP-EAGRLRVQKLADYRLHLAASAEYLSRHPPIRA 178

Query: 183 IQELDKHNLITF-GDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++L  H L+ +  D+I  K ++    L +   P     +S +Q+N       +   G+G
Sbjct: 179 LEDLKAHQLVGYIPDMIFDKELDYLTGLGSGSVPFASNSVS-VQLN-------WLRAGAG 230

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271
           + ++ D+ +   P LV+I+ + ++ S + + 
Sbjct: 231 VGIVHDFAMPSAPELVKILPEALSLSRSFWL 261


>gi|323976713|gb|EGB71801.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
          Length = 302

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 26/302 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +         A P Y 
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQ 233
               +P    +L  H  + F    P   + F+W    +  I     I    V++ L  + 
Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVAGNIILDDVDAELDAV- 230

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
             ++G+GI  L    +K   D   L  ++ED IT  P F +Y  YP     +  L+AF +
Sbjct: 231 --LMGAGIGYLLYEQIKEYLDTGRLECVLEDWITERPGFQIY--YPNRQYMSCGLRAFLD 286

Query: 289 FI 290
           ++
Sbjct: 287 YV 288


>gi|260466513|ref|ZP_05812702.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029662|gb|EEW30949.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 310

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 4/192 (2%)

Query: 6   DKLRVFYVVARSGS---FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L      AR+GS   +T AA  L +S S++S+ I  LE  +G+ LF R  R LT T +
Sbjct: 8   DRLTGIIAFARAGSLGSYTAAARALSISPSAVSKSIQRLERHLGLSLFTRTTRSLTFTPE 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  LH     +  + E  +     +  +PSG LR+A ++ +G +L+   L  F  L+P++
Sbjct: 68  GRDLHERALRLLREAEEIEQAAMTARSEPSGTLRVAASLPIGLHLIAPALPAFRRLHPNL 127

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L ++ +D+  +  D AIR+   +  + L+ RKL    +  +A+P YL+    P  
Sbjct: 128 VVDLRLGDQTVDMIEEGIDVAIRIGD-LADTRLLSRKLAPHRLCCFASPAYLEERGTPTH 186

Query: 183 IQELDKHNLITF 194
             +L  H+ +  
Sbjct: 187 PDDLVGHDTVNL 198


>gi|288960176|ref|YP_003450516.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912484|dbj|BAI73972.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 306

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 1/185 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSFT AA  L +S S++S+ I  LE  +G+ L  R  R LTLT +G +L+  
Sbjct: 15  AFARVGSLGSFTAAARSLSVSPSAVSKSIQRLEQTLGLSLISRTTRSLTLTPEGRELYER 74

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  + +  +   + +S +PSG LR+A ++ +G +++   L EF  +YP + I L L+
Sbjct: 75  ALRLLREADEIEQVAKAASSEPSGPLRVAASLPIGIHMIAPALPEFRRIYPRVTIDLRLN 134

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI     D A+R+ + +  S L+  +L    +  +A+P YL     P    +L +H
Sbjct: 135 DQFVDIVEAGIDIAVRIGE-LADSRLLSCRLAPHRLCCFASPAYLAARGTPAHPDDLARH 193

Query: 190 NLITF 194
             I+ 
Sbjct: 194 ETISL 198


>gi|218673176|ref|ZP_03522845.1| LysR family regulatory protein [Rhizobium etli GR56]
          Length = 247

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 101/182 (55%), Gaps = 1/182 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A SGSFT AA +L L+ +++S+ +  LE ++G++LF R  R + LT +G +  +  
Sbjct: 13  FVESAASGSFTAAAARLDLTPAAVSKNVMQLEQQLGVRLFNRSTRKIVLTAEGREFAQRA 72

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           SEV   L+    ++  +  + +G++RI+    +G+  +   L      +P +++++ LDN
Sbjct: 73  SEVLRALDDAVSDVSRAGGEAAGRVRISVGASIGRRYVLPLLPSLAAAHPRLELEVSLDN 132

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  +R    I+ SSLI R++  + M   A+P YL+    P +  +L  H+
Sbjct: 133 RAVDLVAEGFDIGVR-GGVIRDSSLIARRVCRLPMVLVASPGYLQRHGIPRTPADLAAHS 191

Query: 191 LI 192
           L+
Sbjct: 192 LL 193


>gi|213418103|ref|ZP_03351172.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 294

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 4/237 (1%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   ++    + H++
Sbjct: 2   GSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYYQGCRRMLHEV 61

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           +    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+      D+  
Sbjct: 62  QDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLVTGIPAPDLIA 121

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L  H+ + +   
Sbjct: 122 DGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADLSSHSWLEYSVR 180

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPN 254
                E         R I + R      N  ++++++   G+GIA +P   V D  N
Sbjct: 181 PDNEFELIAPEGISTRLIPQGRFVT---NDPMTLVRWLTAGTGIAYVPLMWVIDEIN 234


>gi|107023034|ref|YP_621361.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686725|ref|YP_839972.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893223|gb|ABF76388.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652440|gb|ABK13079.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 301

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 134/304 (44%), Gaps = 22/304 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++ G+
Sbjct: 4   FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V  +L      + +    PSG LR++  +  G   L  ++  F+  +P + +
Sbjct: 64  VYYARAKRVLGELADADALVADRGDAPSGPLRVSVPVAYGLRRLAPHVAAFVARHPKLDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+     D AIRL     ++ ++ R L T   +  A+  YL     P +  
Sbjct: 124 DLQLTDERVDLVSARIDVAIRLGDAAPTAEVVARPLGTFRRYVVASRAYLDAHGTPATPG 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------G 238
           EL  H  + F   + +    F         +G  R + + V   L      VL      G
Sbjct: 184 ELVDHACLRFHFGVDQQTWTF---------VGAQRTTQVVVTGRLKSNHSEVLREAALDG 234

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDV-ITPS---FTVYFCYPEALKNTGKLKAFRNFIF 291
           +GIALLPD++V    +   L R+ +   +TP      +   Y    + + ++ AF +F+ 
Sbjct: 235 AGIALLPDWLVDTDLEAGRLQRLFDQYDVTPGSARAVITALYLPNQRGSKRVTAFIDFVE 294

Query: 292 LKAR 295
             AR
Sbjct: 295 SLAR 298


>gi|311104983|ref|YP_003977836.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310759672|gb|ADP15121.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           51 [Achromobacter xylosoxidans A8]
          Length = 301

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 120/248 (48%), Gaps = 11/248 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GS + AA  L +S++ +SR ++ +E  VG++L +R  R L+LT  G++  
Sbjct: 7   MQVFVEVADRGSLSAAAIHLDMSRAMVSRYLAEMEQWVGVRLLHRTTRRLSLTPAGAETL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +   +  +      P G LRI T++  G   L   + +++ L+P   + L+
Sbjct: 67  PRCRQMLDMVGDLRNAVSTPDDTPRGLLRITTSMSFGSRHLASAITDYVKLHPGTSVDLM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D A+R+   +   +LI RKL        A+P YL+    P  I++L 
Sbjct: 127 LVDRAVNLVEERVDLAVRITNDLD-PNLIARKLAVCRSVVCASPEYLQREGVPARIEDLS 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             N +T   FG  + +   D         P+  P    +  N    + +  + G+GIA+L
Sbjct: 186 LRNCLTHSYFGKSLWRFERDGE-------PVDVPVSGNISANEVSVLSRAALEGAGIAML 238

Query: 245 PDYIVKDN 252
           P Y   D+
Sbjct: 239 PTYYAADD 246


>gi|229846784|ref|ZP_04466891.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           7P49H1]
 gi|229810273|gb|EEP45992.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           7P49H1]
          Length = 305

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGIM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GIA L
Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKTGLGIANL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|71901256|ref|ZP_00683356.1| regulatory protein, LysR:LysR, substrate-binding [Xylella
           fastidiosa Ann-1]
 gi|71728989|gb|EAO31120.1| regulatory protein, LysR:LysR, substrate-binding [Xylella
           fastidiosa Ann-1]
          Length = 301

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 132/279 (47%), Gaps = 13/279 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +++F  V  +G F  A ++L L++S+I + I+ LE  +G++LF R  R  +LTE G 
Sbjct: 5   FDGVQLFVEVVEAGGFAKAGKRLSLTRSTIGKAIARLEMRLGVQLFQRTTRVQSLTEDGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +        +L   +  L++   + +G+L ++  +  G++ +   L+ +   +P +++
Sbjct: 65  QYYERCLRAIKELRAGEAMLEQGRREVAGRLHVSLPVLFGRHCVAPILRTYAREHPQLEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D+  D  D A+R       ++L  R+L        A+P YL    +P ++ 
Sbjct: 125 ELNFSDHHVDLIADGFDLAVRNGPLGNGTTLRARRLGNQRKILCASPTYLAARGKPHTLA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240
           +L  H+L+T+      C  D N   T+    G     P  S L+ N    I    V G G
Sbjct: 185 DLADHDLLTY------CRNDRNMAWTLPDATGALVDIPITSRLRCNDLEVIADTAVDGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           +A LP +++ +      L+ I  D  +     +  +P A
Sbjct: 239 VAWLPYWLLMERMQRGELIGIWGDRPSAVIECHVVWPAA 277


>gi|309780410|ref|ZP_07675160.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308920803|gb|EFP66450.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 298

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 20/287 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R +  LE  +G+ LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTVGRHVDALERALGMSLFIRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L          LE T   L  ++        G +RI  +  +   +L   L +    YP
Sbjct: 68  SLR----PFAESLEATSAALLRAASSQGEGVRGTVRITASEVVAVEVLPPILADLHAAYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L+  N+  D+    AD A+R+  P Q   L+ R L  I +  +A   YL     P
Sbjct: 124 ELTLELVPSNRMEDLLRREADIAVRMHPPSQ-GVLVARHLGGIELGLFAHQRYLAQRGMP 182

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +I+EL  H LI +      +      F W+        +     L+ +S L+ +     
Sbjct: 183 TTIEELAGHTLIGYDKENAFLRSMRAQFPWV--------QRNRFALRTDSDLAAIAALRA 234

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G GI      + + N +LVR+  + I  +   +    E L+++ + +
Sbjct: 235 GFGIGFCQVGLARHNADLVRLFSEQIAITLDTWLAMHEDLRDSPRCR 281


>gi|152969908|ref|YP_001335017.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238894441|ref|YP_002919175.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150954757|gb|ABR76787.1| putative transcriptional regulator, LysR family [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238546757|dbj|BAH63108.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 301

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 133/288 (46%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++V+  V  + SF  AAE L   +S++SR +  LE  +G +L  R  R L++T +G +
Sbjct: 5   DAMQVYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++   +      S +P+G+ ++     L ++ +   + EFL  YPD+++ 
Sbjct: 65  YYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPDLELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI  +  DC IR  +   S++L+ R L        A+P +L     P SI E
Sbjct: 125 LCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQSIDE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  +  G L  +     +WL ++D      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LHQHRAV--GYLNHRTGRTIDWLFSLDEGDCAIRMRETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y+ +    +  LV  +E   +    +   YP+       ++AF ++
Sbjct: 243 ASYLAQPYLQSGALVACLEQAAS-DLPLSLVYPQNRYLPPAVRAFYDW 289


>gi|197337625|ref|YP_002158576.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314877|gb|ACH64326.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 302

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 142/280 (50%), Gaps = 19/280 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DW    +F  VA+  SF+ AA +L +  +++SR+I  LE+++G +LF R+ R + LT
Sbjct: 2   MNEDW---LLFAKVAQYQSFSEAARRLSVPTTTVSRRIQNLESQLGERLFIRNTRSVVLT 58

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L   T  +   L      ++  S + SGKL+++T+  L Q L+   +  F L YP
Sbjct: 59  ELGQRLLPKTKLLEMALGELHSTIESHSQEISGKLKLSTSDTLSQFLIPNLISTFSLQYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I   +   N++  +  +  D + R+   ++ S+LI  KL  I     AAP +++N    
Sbjct: 119 LINFDISSSNRNEQLLNENIDFSFRI-GLLEDSNLIAYKLCEIEYVLVAAPSFIENSTID 177

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           +++  L +H  I     G  +P C+   + +  ++R   + R+  L +   L+       
Sbjct: 178 ITLDTLIQHPCIIINIDGKEVPWCVSSDDHVLELNRH-KKYRVDNLFIAKSLA-----EA 231

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDV---ITPSFTVYF 271
           GSGIALLP ++ K+      LV I+++V     P   +YF
Sbjct: 232 GSGIALLPKFVAKEAIRTNTLVTILDNVNIQKNPLSLIYF 271


>gi|194364417|ref|YP_002027027.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347221|gb|ACF50344.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 305

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 17/279 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A +GSFT AAE+LHL+ S++ + ++ LE  +G +LF R  R L LTE G   +
Sbjct: 10  IEAFVATAEAGSFTAAAERLHLTSSAVGKTVARLEARLGARLFERSTRRLRLTEAGEGFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    V  +L   +  L   +  P G+LR+      G+  +   L +    +P ++ Q+ 
Sbjct: 70  RTCVRVLGELADAESVLAAHADAPVGRLRVDAPATFGRLKVWPLLLQLAAEFPRLRPQVT 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ ID++ D  D A+R+  P    ++L  R L    +   A+P YL+    P S  EL
Sbjct: 130 FSDRFIDLAEDGVDLAVRIGGPEPLPATLGSRLLGHECLRFCASPAYLQRHGLPTSGAEL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ------VNSYLSIMQYCVLGSG 240
             H+ + FG    +           D   G  R + LQ      V S  + +     G G
Sbjct: 190 ADHDGVLFG----RADGSIGPWQVAD---GGQRSAPLQARARLVVGSAEAQVAAVEAGFG 242

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           IA L  ++V D     +LV I+  +      +   +P+ 
Sbjct: 243 IAQLATWLVDDALARGSLVSILPALDCRGLPLRLLWPQG 281


>gi|254248915|ref|ZP_04942235.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875416|gb|EAY65406.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 325

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 130/294 (44%), Gaps = 15/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G +  
Sbjct: 34  LVAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 92

Query: 68  RVTSEVYHKLETTQIELQESSVKPSG--KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              ++V+H L T   E     +KP G  +L IA +  +    L   L  F   YP+I+++
Sbjct: 93  --AAQVHHLL-TQCAEATHDVMKPYGDLELTIACSSGVAVLWLTPRLPSFRAAYPNIKLR 149

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   +
Sbjct: 150 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAAD 207

Query: 186 LDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L    L+   D   + M    W  L  VDR   +P+   + +NSY  I+Q  +LG G++L
Sbjct: 208 LANETLLRLEDGQRQWMSWSEWFDLNDVDRQKAQPQD--ITINSYPQIVQMTILGQGVSL 265

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              Y++    +   LVR+ E   +     Y   P         + F  ++F +A
Sbjct: 266 GWRYMIDACIEAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWLFEQA 319


>gi|209550967|ref|YP_002282884.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536723|gb|ACI56658.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 297

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 140/292 (47%), Gaps = 16/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE G   
Sbjct: 6   RIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121
           +R  S++  +++     ++E++ +  G+LRI+        D+GQ+L+     +F    PD
Sbjct: 66  YRSASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLI-----DFSRENPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H    P +L+  R P 
Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKISDFRVHLCVTPDFLE--RHPD 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                D  N+    D   +      +    +          ++VNS  + ++  + G GI
Sbjct: 178 LAHPSDISNVPFIVDTNSRTQASIRFHNPDNTSFSVAVSGPMEVNSPHATLRAALAGIGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL+PD+I +   ++  LV +  D +     +Y  YP       K++ F +++
Sbjct: 238 ALIPDFIARKPIESGELVTLFNDYLPTDRGIYAVYPHRRYLPAKVRIFVDYL 289


>gi|90579068|ref|ZP_01234878.1| hypothetical D-serine deaminase activator [Vibrio angustum S14]
 gi|90439901|gb|EAS65082.1| hypothetical D-serine deaminase activator [Vibrio angustum S14]
          Length = 301

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F + A   SFT AAE L L+QS++S +I  LE  +G++LF R  R L LT++G +L 
Sbjct: 14  LHCFLIAAEQMSFTRAAEVLFLTQSAVSHKIKNLEEALGVQLFIRQPRKLILTDEGFRLK 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +V +  +  +     +L+  +V+ SG + I+      Q  L   LK F+ LYP ++I L 
Sbjct: 74  QVLAANFGDIAHEIRDLK--NVELSGDINISVPPTFAQTWLLPRLKSFIDLYPMLRIHLR 131

Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             N+ +D   +  DCAI   K     + S  L+   +  +  H YA  + L +  E L I
Sbjct: 132 TRNELVDFQTESFDCAIYFGKGEYQGLHSCKLMDEAMQPVCSHDYAIANDLYDNPEGL-I 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
           Q L  H+   +     +   +  W    ++   + P   C    S L+ +Q    G G+A
Sbjct: 191 QCLLLHDAAPWA----RAGRNDEWQLWAEQYGTQLPESECTFDRSDLA-LQAAECGIGVA 245

Query: 243 LLPDYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
           +     + +     R++   D++ PS F+ Y      ++NT K+KAF +++F
Sbjct: 246 MGRHSFIAERLVEKRLVTPFDMMAPSPFSYYVVCRHNMQNTPKIKAFSDWLF 297


>gi|15804065|ref|NP_290101.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 EDL933]
 gi|15833655|ref|NP_312428.1| transcriptional regulator LYSR-type [Escherichia coli O157:H7 str.
           Sakai]
 gi|168746941|ref|ZP_02771963.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168753333|ref|ZP_02778340.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168759604|ref|ZP_02784611.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168765928|ref|ZP_02790935.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168772525|ref|ZP_02797532.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168779664|ref|ZP_02804671.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168785386|ref|ZP_02810393.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|168797351|ref|ZP_02822358.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|195935049|ref|ZP_03080431.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808869|ref|ZP_03251206.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208812456|ref|ZP_03253785.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208821989|ref|ZP_03262309.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209396325|ref|YP_002273000.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217324528|ref|ZP_03440612.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|261224836|ref|ZP_05939117.1| transcriptional regulator, LysR family protein [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261254267|ref|ZP_05946800.1| transcriptional regulator, LysR family protein [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284893|ref|YP_003501711.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|12518233|gb|AAG58662.1|AE005577_7 putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EDL933]
 gi|13363875|dbj|BAB37824.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. Sakai]
 gi|187771430|gb|EDU35274.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188018447|gb|EDU56569.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|189002420|gb|EDU71406.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189358954|gb|EDU77373.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189364423|gb|EDU82842.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189369864|gb|EDU88280.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189374461|gb|EDU92877.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|189380120|gb|EDU98536.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|208728670|gb|EDZ78271.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208733733|gb|EDZ82420.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208742112|gb|EDZ89794.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209157725|gb|ACI35158.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209755508|gb|ACI76066.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209755510|gb|ACI76067.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209755512|gb|ACI76068.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209755514|gb|ACI76069.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209755516|gb|ACI76070.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|217320749|gb|EEC29173.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|290764766|gb|ADD58727.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|320191432|gb|EFW66082.1| LysR family transcriptional regulator YhjC [Escherichia coli
           O157:H7 str. EC1212]
 gi|320639837|gb|EFX09431.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. G5101]
 gi|320645337|gb|EFX14353.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H- str. 493-89]
 gi|320650648|gb|EFX19114.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H- str. H 2687]
 gi|320655842|gb|EFX23765.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661624|gb|EFX29039.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320666647|gb|EFX33630.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326337481|gb|EGD61316.1| LysR family transcriptional regulator YhjC [Escherichia coli
           O157:H7 str. 1044]
 gi|326340007|gb|EGD63814.1| LysR family transcriptional regulator YhjC [Escherichia coli
           O157:H7 str. 1125]
          Length = 323

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 31  MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL  +L EFL  +P I+++L 
Sbjct: 91  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPHLSEFLYQHPGIELELS 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P +  +L 
Sbjct: 151 SHDRPVDILHDGFDCVIR-TGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQNPDDLT 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 210 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 268

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 269 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|83746965|ref|ZP_00944011.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83726385|gb|EAP73517.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 298

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 127/283 (44%), Gaps = 20/283 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q +  R +  LE  +G  LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L R  +E    LE+T   L  ++        G +RI  +  +   +L   L +    YP
Sbjct: 68  AL-RPYAE---SLESTSAALLRAASSQGEGVRGTVRITASEVVTGEVLPAILADLHAAYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L+  N+  D+    AD A+R+++P Q   LI R +  I +  +A   YL+    P
Sbjct: 124 GLTLELVPSNRLEDLLRRDADIAVRMQRPSQ-GVLIARHIGGIELGVHAHRRYLERRGTP 182

Query: 181 LSIQELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            ++ +L  H LI +      I        W+   DR         L+ +S L+ +     
Sbjct: 183 ATLDDLAGHALIGYDRETAFIRGMKGQVPWMRR-DR-------FALRTDSDLAGLAALRA 234

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
           G GI +    + + +P+LVR+  D + P    +    E L+++
Sbjct: 235 GFGIGICQVGLARRDPDLVRLFADEVAPVLDTWLAMHEDLRDS 277


>gi|15601735|ref|NP_233366.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121587016|ref|ZP_01676794.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121726358|ref|ZP_01679632.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147671871|ref|YP_001215098.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153212206|ref|ZP_01948001.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|153801819|ref|ZP_01956405.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|153818185|ref|ZP_01970852.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153821081|ref|ZP_01973748.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|153824692|ref|ZP_01977359.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|153827885|ref|ZP_01980552.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|227812547|ref|YP_002812557.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229505883|ref|ZP_04395392.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229510263|ref|ZP_04399743.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229514390|ref|ZP_04403851.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
 gi|229517606|ref|ZP_04407051.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229522503|ref|ZP_04411919.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
 gi|229528123|ref|ZP_04417514.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229605416|ref|YP_002876120.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254224726|ref|ZP_04918342.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|254284605|ref|ZP_04959572.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|254850145|ref|ZP_05239495.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746283|ref|ZP_05420230.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262158164|ref|ZP_06029282.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1]
 gi|262169237|ref|ZP_06036930.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
 gi|9658422|gb|AAF96878.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121548751|gb|EAX58798.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121631106|gb|EAX63481.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|124116758|gb|EAY35578.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124122653|gb|EAY41396.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|125622789|gb|EAZ51107.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|126511291|gb|EAZ73885.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126521455|gb|EAZ78678.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146314254|gb|ABQ18794.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|148876730|gb|EDL74865.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|149741648|gb|EDM55677.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|150425390|gb|EDN17166.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|227011689|gb|ACP07900.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227015627|gb|ACP11836.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|229334485|gb|EEN99970.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229340488|gb|EEO05494.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
 gi|229345642|gb|EEO10615.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229348370|gb|EEO13328.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
 gi|229352708|gb|EEO17648.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229356234|gb|EEO21152.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229371902|gb|ACQ62324.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254845850|gb|EET24264.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736037|gb|EET91435.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262022518|gb|EEY41226.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
 gi|262030042|gb|EEY48688.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1]
 gi|327485952|gb|AEA80358.1| Predicted Lactate-responsive regulator, LysR family [Vibrio
           cholerae LMA3894-4]
          Length = 299

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L +HN + +        + +F     N++  V              ++  ++ +  + G 
Sbjct: 183 LARHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA +P  +V     N  LV +  + +     +Y  YP
Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272


>gi|242312659|ref|ZP_04811676.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|242135898|gb|EES22301.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 358

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +   L  R  R L LT  G + 
Sbjct: 28  NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTHLMNRSTRRLALTPAGERY 87

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 88  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 147

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 148 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHAAPRTPRDL 207

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 208 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 262

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 263 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 308


>gi|116253452|ref|YP_769290.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258100|emb|CAK09201.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 299

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 122/248 (49%), Gaps = 12/248 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F     +G F+ AAE+LHL++S++ + I+ LE  +G++LF R  R  +LTE+G   +  
Sbjct: 9   IFVEAVEAGGFSAAAERLHLTRSAVGKTIARLEQRLGVRLFNRTTRMQSLTEEGRFFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 ++   +  L+       G+LRI+  +  G++ +   L   L  +P++++ L  +
Sbjct: 69  CLRAVEEIRLGEAMLESGRRDVRGRLRISMPVLFGRHCIAPILARLLDEHPNLELDLSFN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  D  D  IR      +  L+ R +    M   AAP YL+    P ++ ++ +H
Sbjct: 129 DRIVDLLEDGFDLVIRNGPLKDNPDLMVRAIARQRMTVCAAPAYLEKHGAPQTVFDIPQH 188

Query: 190 NLITF--GDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALL 244
             I +  GD      +D  W+       G    P+ + L+++   SI    V G G+A L
Sbjct: 189 EGIVYRRGD------DDKGWIFPTATDPGRRLAPK-ARLRLDDLASISDAAVAGRGLAWL 241

Query: 245 PDYIVKDN 252
           P ++V++ 
Sbjct: 242 PCWLVREE 249


>gi|126172500|ref|YP_001048649.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125995705|gb|ABN59780.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 307

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 135/288 (46%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SFT A+  L LS++ +S  ++  ET +G +L  R  R + LT+ G   +
Sbjct: 8   MQIFMRVAELQSFTQASASLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLTQDGQSCY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +   Q  + + SG+LR+  +  + +NL+   L EF+  YP I+++L 
Sbjct: 68  ERCKSLLAEFQELESLFQLQAEQVSGRLRVDMSTGIARNLVLPKLAEFIEQYPHIELELS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC IR+   +Q   LI +K+    M    +P Y+    +P S+++L 
Sbjct: 128 STDRKVDVIAEGFDCVIRVGS-VQQEGLIAKKMGHFKMLNCVSPAYIAKYGKPESLEDLT 186

Query: 188 KHN--LITFGDLIPKCMEDFNW----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            HN  L+ +   +      F +        +  I  P++  + VN+  +    C+ G GI
Sbjct: 187 LHNHKLVHYVSQLGGTDSGFEYQDPHTHQANLTIQLPKL--ITVNNADAYSSACLAGLGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +P   V        LV I+++   P   V   YP     + +L+ F
Sbjct: 245 IQVPSIGVAKYLHTGELVEILQNYPAPPMPVSLLYPHRRHLSKRLQVF 292


>gi|53723130|ref|YP_112115.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|167744055|ref|ZP_02416829.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           14]
 gi|167821255|ref|ZP_02452935.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           91]
 gi|167851075|ref|ZP_02476583.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           B7210]
 gi|167899705|ref|ZP_02487106.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           7894]
 gi|167916361|ref|ZP_02503452.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           112]
 gi|167924220|ref|ZP_02511311.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           BCC215]
 gi|237507950|ref|ZP_04520665.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           MSHR346]
 gi|254300788|ref|ZP_04968232.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52213544|emb|CAH39597.1| putative LysR family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|157810913|gb|EDO88083.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|235000155|gb|EEP49579.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           MSHR346]
          Length = 313

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA+ LHL+QS+IS+QI  LE  +G  LF RHARGL LT +G  LH
Sbjct: 13  LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T   +  L  T  +L      P   L+++         L   L EF  L+P   ++L 
Sbjct: 73  EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
            +   ID   +S D  D AIR   P    +L    L    + A AAP YL
Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYL 177


>gi|157372626|ref|YP_001480615.1| putative DNA-binding transcriptional regulator [Serratia
           proteamaculans 568]
 gi|157324390|gb|ABV43487.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 303

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 113/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVECGSFTAAARQLDMSVSSISQTVSKLENELQVKLLNRSTRSIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  ++     +L   +  P+G LRI ++  + QN+L     + L  YP + + L
Sbjct: 66  YQGCRRMLLEVSEVHEQLYAFNNTPTGTLRIGSSSTMAQNVLATMTADMLKEYPGLTVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR    +Q SSL  ++L ++ M   AA  YL     PL     
Sbjct: 126 VTGIPAPDLIADGLDVVIRT-GALQDSSLFSKRLGSMPMVVCAAKSYLSQHGTPLK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISC---LQVNSYLSIMQ 233
                       P  M +F+WL    RP  E           RIS       N   ++++
Sbjct: 181 ------------PSDMVNFSWLEYSVRPDSEFELIAPEGISTRISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKAGAGIAYAP 240


>gi|254253025|ref|ZP_04946343.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124895634|gb|EAY69514.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 323

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 129/288 (44%), Gaps = 13/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VAR  SF  AA +L ++ S++S+ +  LE+ +G  LF R  R + LTE G +
Sbjct: 13  DGVEAFLSVARHRSFRRAAAELGVTPSAVSQVVRALESRIGTALFIRTTRSVGLTEAGER 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + +L       +E   +P+G LR++    +   LL+  +  F   YP+I+++
Sbjct: 73  FLSRAKPAFEELVAASDAARELGRRPAGLLRLSVPRAVVPILLEPLIASFCNAYPEIEVE 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    K +D++ +  D  +RL + + +  +              +P Y  +   P  I +
Sbjct: 133 IDASEKLVDLAAEGFDAGMRLGQFVAADMVAVPLTPPFRFVVVGSPAYFADHDRPERIDD 192

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H  + +    G L P   +D     T++  +  P    L    + +++   + G G+
Sbjct: 193 LRGHACVRWRRSNGALAPWSFDDGGR--TIEAAVSGP----LVARDFPTVLGAALEGVGL 246

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A LP+ +V +      LV+++E        V+  YP   +   KL+AF
Sbjct: 247 AQLPEPMVAEGLKAGKLVQVLEPFAPMMPGVFLYYPSRRQIAPKLRAF 294


>gi|67642578|ref|ZP_00441332.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121597929|ref|YP_991169.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|126447274|ref|YP_001077632.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|167002418|ref|ZP_02268208.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254177440|ref|ZP_04884096.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254203127|ref|ZP_04909489.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254208461|ref|ZP_04914810.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|121225727|gb|ABM49258.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|126240128|gb|ABO03240.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|147746172|gb|EDK53250.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147751148|gb|EDK58216.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|160698480|gb|EDP88450.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|238523759|gb|EEP87195.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243061902|gb|EES44088.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 313

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA+ LHL+QS+IS+QI  LE  +G  LF RHARGL LT +G  LH
Sbjct: 13  LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T   +  L  T  +L      P   L+++         L   L EF  L+P   ++L 
Sbjct: 73  EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 128

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
            +   ID   +S D  D AIR   P    +L    L    + A AAP YL
Sbjct: 129 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYL 177


>gi|269965003|ref|ZP_06179168.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
 gi|269830306|gb|EEZ84531.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
          Length = 318

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 129/291 (44%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R   LTE G +  
Sbjct: 7   LRFFIATLDGGSFAAAAKVYGTDPSTVSKAIHRLESDLGIQLFQRSTRQSRLTEAGRRYA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +L   +  L+  +   SG+L+I   +  G+  ++  LKEF   YP+I I + 
Sbjct: 67  NTARFVLEELAACEDSLKSHNDALSGQLKINVPVSYGRLYIRPLLKEFCRRYPNITIDIH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+  +DI     D +IR    +  S LI R+L  I     A+  YL     P      +
Sbjct: 127 YDDAYVDIIEQGIDVSIR-SGVVHDSQLIVRQLSPIEFIICASQDYLARHGVPSGPDVFN 185

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+ + F     G L+P  M + +  +  D     P  + + VN   S+ + C  G G+ 
Sbjct: 186 DHSWVRFRFKQTGKLLPIRMPEPDGASEYD-----PERNYI-VNDGESMAELCAEGLGLT 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P +I +D   +  LV I   +      VY  Y        +++ F +FI
Sbjct: 240 QIPHFIARDWLKSGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFI 290


>gi|237808739|ref|YP_002893179.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237501000|gb|ACQ93593.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 297

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 127/268 (47%), Gaps = 8/268 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  +A+ GSFT AA +L +SQS++S  I  LE  + ++LF R  R ++L++ G +L  +
Sbjct: 11  LFIALAQEGSFTKAAAKLGMSQSALSHAIKALEERIKLRLFNRTTRSVSLSDAGERLLTI 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
               + ++E     L E   K +G +R++++    Q ++   +K+F   YPDI++++ ++
Sbjct: 71  IEPRFTEIEDELQLLNEDYHKAAGNIRLSSSDYAAQYIIWPVVKQFAKEYPDIKVEINVE 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           NK  DI  +  D  +R    +    +  R    I       P YL+   EPL   +L KH
Sbjct: 131 NKLTDIVTERYDAGVRFGDQVAKDMIAVRISPDIRFLIVCTPAYLEGKSEPLIPDDLLKH 190

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             I         M  + W    D    + R+      NS   ++   +   G A LPD +
Sbjct: 191 QCINMRLNSNGGM--YAWEFERDGKSSKLRVHGQFAFNSPNQVLDATLDNFGFAYLPDTM 248

Query: 249 VK---DNPNLVRIMED--VITPSFTVYF 271
           V    +   LV ++++   +TP   +Y+
Sbjct: 249 VNKYLEAGQLVSVLKEWSPLTPGLHLYY 276


>gi|218515811|ref|ZP_03512651.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 301

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 14/250 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GSF    + + LS+S+  + +  LE  +G +L  R  R L+LT++G   +  
Sbjct: 11  IFMAVVDAGSFIAGGQAMGLSRSAAGKAVIRLEDRLGTRLLNRTTRRLSLTDEGRLFYEH 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             EV   ++  +  +   S  P G LR+      G+ ++   ++++LL +PDIQ+++   
Sbjct: 71  GLEVLASVDEAEASVAGQSGAPRGVLRLTVPDAFGRLVVLPIVEKYLLAWPDIQVEVNFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSS--SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++  DI  +  D AIR+     +S   L+ R +        A+P YL +  EP  I +L 
Sbjct: 131 DRKADIVEEGFDLAIRIGAMPSASENGLLSRVIAADRARLCASPFYLADRGEPCHIDDLA 190

Query: 188 KHNLITFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+ + F     +        D  W+    R       S L+++S  +I    V G GIA
Sbjct: 191 AHDCLVFSSRDQRQGWRFRGNDGAWVKAQGR-------SRLRLDSSEAIRDAAVAGLGIA 243

Query: 243 LLPDYIVKDN 252
           LLP ++   +
Sbjct: 244 LLPGFLAAGD 253


>gi|163803696|ref|ZP_02197557.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
 gi|159172507|gb|EDP57371.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
          Length = 301

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 109/187 (58%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQISGLET++G+ L  R  R L LT  G + +
Sbjct: 10  IRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLETQMGVTLLTRTTRTLRLTHAGERFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +  + ++   I   +   +  G +R+      +G++++   + EF+L YP+I + L
Sbjct: 70  QECEKALYNIDQALIAAVDDIQEVRGLIRVNCVGGYIGEDIIAKYVNEFMLEYPNITVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID+  D  D AIR+ + ++ +  +  KL+ I M   A+P+YL+   EP++ ++L
Sbjct: 130 DFSSPRIDLIEDQFDVAIRMGE-LEDAGFVASKLMMIDMATLASPNYLEIHGEPVTPKDL 188

Query: 187 DKHNLIT 193
            KH  +T
Sbjct: 189 AKHRTLT 195


>gi|148557216|ref|YP_001264798.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148502406|gb|ABQ70660.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 307

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 134/293 (45%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR+F      G F  AA  L L +S +SR+I+ LE  +G++L  R  R  ++TE G
Sbjct: 3   DLNDLRLFVQAVDHGGFAAAARALGLQKSKLSRRIALLEERLGVRLIQRSTRRFSITEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R    +  + E  Q  + +S  +P G +R++    L        L  F+ LYPD++
Sbjct: 63  QEYYRRCVAMLVEAEAAQAVIDQSRSEPRGVVRLSCPTGLLAFQFGELLGRFMALYPDVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D AIR+R  P+  S L+ R+     +   AAP  L   R   +
Sbjct: 123 LHVESTNRRVDVIGEGFDLAIRVRPPPLAESELVMRRFDERTIRIVAAPALL-TARLVAA 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240
             +L +   + FG        D  W LA  D  + E R     V   +++++   L G+G
Sbjct: 182 PADLSELPTLDFG----PARGDHRWRLAHADGRVAEVRHKPRLVTDDMAVLREAALTGAG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              LP   V D+     LV ++ +    +  V+  +P        ++A  +FI
Sbjct: 238 AVRLPTLAVWDDLQSGKLVTLLPEWRPANEIVHAVFPSRRGLLPSVRALLDFI 290


>gi|83718032|ref|YP_438446.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|257141495|ref|ZP_05589757.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651857|gb|ABC35921.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 317

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 114/253 (45%), Gaps = 16/253 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA  LHL+QS+IS+QI  LE  +G  LF RHARGL LT +GS L+
Sbjct: 13  LRCFEAAGRLGSFTKAAGALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGSVLY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+  +  L  T  +L      P   L+++         L   L EF  L+P   ++L 
Sbjct: 73  EATATAFGSLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLSEFHRLHPQTPVRLR 128

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ID   +  D  D AIR   P    +L    L   ++ A AAP YL       + +
Sbjct: 129 AEFHAIDRETMRADDIDVAIRW-DPFDYRALHVEPLFDEYLVAAAAPAYLGRHPPRATAK 187

Query: 185 ELDK----HNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +      H+   + D  P+ +E   WL A V    GE R     + S    +   V G 
Sbjct: 188 WISSVVPLHDASAWPD-APRYVEWRTWLDAVVPGYAGELRGPEFNLASL--AIGAAVAGQ 244

Query: 240 GIALLPDYIVKDN 252
           G+ +  + +V D 
Sbjct: 245 GVVVCREALVNDE 257


>gi|109897697|ref|YP_660952.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109699978|gb|ABG39898.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 293

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 133/292 (45%), Gaps = 22/292 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L +F  VA+  SFT AA+ L +S+  +S QI  LE ++   LF R  R ++LTE+G+
Sbjct: 8   FERLILFSEVAKQLSFTRAAQVLSISRGYLSEQIRKLEQDMDKHLFIRSTRHVSLTEEGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    +++   L   + E++  +    G+LRI       Q  +     EF   YP I +
Sbjct: 68  QLLAGMNQIKRSLLALEREIRHDNDALEGELRITAPNQFAQRYILDLCAEFQACYPAISV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +       D+S +  D A R  K P Q  +++ +KL        A+P YL    EP  I
Sbjct: 128 SVDCSYTTYDLSQNDFDLAFRATKAPPQ--NMVAKKLFNYRHTCCASPEYLAKHGEPKRI 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240
           ++L  H  +      PK    F           E ++   S L VN    + ++ V G G
Sbjct: 186 EDLGAHICLCQS---PKTHWQF----------AEHKVNINSQLAVNDNFILKKHAVAGKG 232

Query: 241 IAL---LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I L           +  LV ++   ++P F +Y  +P+ +  + +LKAF  F
Sbjct: 233 IILVPEYVVEEEVSSGELVPLLGSALSPDFAMYLIHPQLIHQSARLKAFIAF 284


>gi|262191955|ref|ZP_06050122.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93]
 gi|262032189|gb|EEY50760.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93]
          Length = 299

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L +HN + +        + +F     N++  V              ++  ++ +  + G 
Sbjct: 183 LARHNCLQYAYQTTGATDWEFKGVKGNYIVKVS--------GTFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA +P  +V     N  LV +  + +     +Y  YP
Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272


>gi|260778786|ref|ZP_05887678.1| hypothetical transcriptional regulator [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604950|gb|EEX31245.1| hypothetical transcriptional regulator [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 307

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 1/181 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +   V+ SGSF  AAE+LH+ +S +S+QI  LE  +G++L  R  R L LT  G  
Sbjct: 5   NRLEMLLEVSESGSFAKAAERLHMDRSVLSKQIKKLEETLGVRLLNRSTRSLALTSAGQD 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     +V   L  T+        +P G LRI++    G+  LQ  +++F+  YP I I+
Sbjct: 65  IVHQARKVRELLADTRNIADTYHNEPKGHLRISSATVFGRMYLQPAIEKFMAKYPQITIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LILD++ +D+  +  D   R+ K +Q S+L+ +K+        A+  +++    P + +E
Sbjct: 125 LILDDRRVDVIGERFDVVFRIGK-LQDSNLVAKKIAPNDFSLLASREFVELHGNPETPEE 183

Query: 186 L 186
           L
Sbjct: 184 L 184


>gi|254184488|ref|ZP_04891077.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184215080|gb|EDU12061.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 315

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA+ LHL+QS+IS+QI  LE  +G  LF RHARGL LT +G  LH
Sbjct: 15  LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGGALH 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T   +  L  T  +L      P   L+++         L   L EF  L+P   ++L 
Sbjct: 75  EATVAAFASLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLTEFHRLHPQTPVRLR 130

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
            +   ID   +S D  D AIR   P    +L    L    + A AAP YL
Sbjct: 131 AEFHAIDRETMSADDIDIAIRW-DPFSYGALHVEPLFDESLVAAAAPAYL 179


>gi|157373096|ref|YP_001481085.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157324860|gb|ABV43957.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 297

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 11/255 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A   SF  A E+L +S S++ + ++ LE  +G++LF R  R + LTE+G+   
Sbjct: 7   LLAFVRAAELHSFVAAGERLGISASAVGKSVARLEESLGVRLFNRSTRRINLTEEGALFF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  + E+   S  P GKLR++    +G  +L   L +F  LYP++++ + 
Sbjct: 67  ERCQRIVSEIENAEAEMARISDAPRGKLRVSMPA-IGYRMLVPLLADFSELYPEVELDVD 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  D A+R    +  S L+ R+L    +    AP Y +    P   ++L 
Sbjct: 126 FNDRMVDLIAEGIDVAVR-SGDLADSRLMARRLGPFRLILAGAPEYFQRRGMPQVPEDLL 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISC-LQVNSYLSIMQYCVLGSGIAL 243
            H  + +    P   +   W    D   GEP   R+   L  NS  +++     G GIA 
Sbjct: 185 SHACLRY--RYPGGQQLQEWTLFAD---GEPVSLRVPVTLSCNSIEALIHATQEGLGIAY 239

Query: 244 LPDYIVKDNPNLVRI 258
           LPD+ +    N  R+
Sbjct: 240 LPDFTLCQAANAGRL 254


>gi|104781378|ref|YP_607876.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110365|emb|CAK15073.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 305

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 129/265 (48%), Gaps = 14/265 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  VA   SF  AA  L  S S+++R +  LE   G KLF R A  ++LTE G +L
Sbjct: 8   EIQAFVSVAHKRSFISAARSLGRSPSAVTRAVQTLEDNTGAKLFNRSASAVSLTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +         EL   +    G +R+A    L Q++L   L EF   +P + + +
Sbjct: 68  LPHAERLLDVQRDAADELAALTGSAQGWIRLAAPEVLAQHVLPSVLAEFSQRHPKVTLDV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D      D  IR   P QSS LI   L     + YA+P YL +   P ++ EL
Sbjct: 128 QFGDQALDPLQGKFDFVIRGAFP-QSSELIGYPLWAYRRYLYASPRYLASAGTPTTLDEL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++H LI      P+ ++ +++      T  RP  +PR   L++ S ++++Q  + G+GIA
Sbjct: 187 ERHALILH--TAPRILKAWHFCREGQITSLRP--QPR---LRLGSGVAVLQSTLAGAGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF 267
            L D++ + +    R+++  I P +
Sbjct: 240 RLADWLAEPHVQAGRLVK--ICPQY 262


>gi|254227398|ref|ZP_04920830.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262396337|ref|YP_003288190.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151940010|gb|EDN58836.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262339931|gb|ACY53725.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 318

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 129/291 (44%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R + LTE G +  
Sbjct: 7   LRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTEAGRRYA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +L   +  L+  +   SG L+I   +  G+  ++  LKEF   YP I I + 
Sbjct: 67  NTARFVLDELAACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPSITIDIH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+  +DI     D +IR    +Q S LI R+L  I     A+  YL     P      +
Sbjct: 127 YDDAYVDIIEQGIDVSIR-SGVVQDSQLIVRQLSPIDFIICASQDYLARHGVPSGPDVFN 185

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+ + F     G L+P  M + +  +  +     P  + + VN   S+ + C  G G+ 
Sbjct: 186 DHSWVRFRFKQTGKLLPIRMPEPDGASEYN-----PERNFI-VNDGESMAELCAEGLGLT 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P +I +D   +  LV I   +      VY  Y        +++ F +FI
Sbjct: 240 QIPHFIARDWLKSGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFI 290


>gi|262403056|ref|ZP_06079616.1| transcriptional regulator LysR family [Vibrio sp. RC586]
 gi|297579977|ref|ZP_06941904.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|262350555|gb|EEY99688.1| transcriptional regulator LysR family [Vibrio sp. RC586]
 gi|297535623|gb|EFH74457.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 299

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L +HN + +        + +F     N++  V              ++  ++ +  + G 
Sbjct: 183 LARHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA +P  +V     N  LV +  + +     +Y  YP
Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272


>gi|309973048|gb|ADO96249.1| Putative LysR-family transcriptional regulator [Haemophilus
           influenzae R2846]
          Length = 305

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGIM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GIA L
Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKTGLGIANL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|87121606|ref|ZP_01077494.1| putative transcriptional regulatory protein (LysR family protein)
           [Marinomonas sp. MED121]
 gi|86163138|gb|EAQ64415.1| putative transcriptional regulatory protein (LysR family protein)
           [Marinomonas sp. MED121]
          Length = 301

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 141/298 (47%), Gaps = 18/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  ++ F  V   GSFT AA+   +  SS+SR++S LE ++G  L  R  R + LTE G
Sbjct: 3   EFKAIKYFIKVVELGSFTQAAQHFQVPASSLSRRVSDLEKQLGASLLKRSTRVVKLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+ ++  S +  + E T   ++    KP G L+++     GQ +L   L E + LYPDI 
Sbjct: 63  SQYYQDVSLLLSQFEKTNDAVRSYQAKPMGMLKVSAMTGFGQRVLLPLLDELVQLYPDII 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L ++   +S D  D A R    + +  +   KL+  H    A+  Y +   +P  +
Sbjct: 123 LDVHLTDELSSLSHDEVDIAFR-GGYVPNERINAVKLMDNHFIPVASTAYFERYGKPSHV 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            EL  H  + +    PK      WL+ ++   + +      C    S+L  ++  + G G
Sbjct: 182 SELKNHRGLYY--RTPKGHTP--WLSELEGQWQDVSAKIQVCSNEGSWL--IEKAIQGEG 235

Query: 241 IALLPDYIVKD---NPNLVRI-MEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +LP +++ +      L+ +  E+ +T    P F ++  Y +   +  K+K   +FI
Sbjct: 236 ILMLPKWVLMEYISKGELIELKFENEVTVSPNPDFGIFLLYQKQRYHVPKVKVAVDFI 293


>gi|239503574|ref|ZP_04662884.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB900]
          Length = 311

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 132/296 (44%), Gaps = 20/296 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G +
Sbjct: 11  NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I IQ
Sbjct: 71  VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P     
Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPKYLAKHGTPNHPHN 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-----G 240
           L +H  I  G+        F          G   IS      Y +      L +     G
Sbjct: 190 LKQHECIYLGEQASDSKWKFQQ--------GNKSISVAVRGRYAANHTGVRLSAALQHLG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFI 290
           IA LP ++ +       LV+++ D    ++    ++  YP       KL  F  ++
Sbjct: 242 IASLPYFVARHALQQGTLVQVLPDWYFKTYYSGGLWLLYPPTRHVPPKLSVFIQYL 297


>gi|156935112|ref|YP_001439028.1| hypothetical protein ESA_02963 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533366|gb|ABU78192.1| hypothetical protein ESA_02963 [Cronobacter sakazakii ATCC BAA-894]
          Length = 311

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 113/250 (45%), Gaps = 15/250 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  V    SF+  A +  +S S ISR +  LE  +G +LFYR+ R +  TE G    
Sbjct: 12  LQLFISVFDGQSFSAVARREGVSASMISRTVRQLEEALGQQLFYRNTRAVIPTEAGRLFA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +    + ELQ+ S++PSG LRI   +  GQ  +   L      YP +Q+ L 
Sbjct: 72  QYARGITEQFSEARRELQDRSLEPSGLLRINAPVFFGQRHIAPWLTGLAERYPRLQLALT 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D   D  D  +R+   +  SS   R       +  AAP YL     P S +EL 
Sbjct: 132 QTDDYVDPHRDATDLIVRIGT-LTDSSFHARVFCEQRYYFAAAPRYLARYGAPASPEELQ 190

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSGI 241
            H  + + G   P       WLA   R  GEP +     + L  N+  S++   + G G+
Sbjct: 191 AHQCLVYSGSSGPN-----RWLA---RKPGEPWVHYPVNARLVSNNAHSLLTAALDGMGL 242

Query: 242 ALLPDYIVKD 251
            L PD++  +
Sbjct: 243 VLFPDWMTGE 252


>gi|254672004|emb|CBA04502.1| Transcriptional regulator [Neisseria meningitidis alpha275]
          Length = 430

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LT  G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTGAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEV 184


>gi|194364837|ref|YP_002027447.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347641|gb|ACF50764.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 324

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 136/294 (46%), Gaps = 11/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +A   SFT AA+++ +S+ ++S+ +  LE ++G++L +R  R ++LTE+G +L 
Sbjct: 15  LAGFAHIAHHRSFTKAADEMGISRPALSQNLKTLEKQLGVRLLHRTTREMSLTEEGQRLF 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    +E     L+ +   PSG LRI T     + L++ +L EF   +P+++I+L+
Sbjct: 75  DALRPSLGTIEAAVRGLRANHDAPSGLLRINTARLTAKTLIEPHLPEFFARFPELRIELV 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+    I  D  D  IRL + +    +       + M   A+PHYL     P +  EL 
Sbjct: 135 MDDGLSSIVADGCDAGIRLGERLAEGMIAVPVTPMLEMVVAASPHYLARHGTPTTPAELA 194

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242
            H  + +          + W  +T  +P      EPR   +  N    +++  + G G+ 
Sbjct: 195 SHECLGYRQT--GSGNIYAWEFSTPGQPGHDFEVEPRGRYVS-NDDEGMIRAALQGLGVM 251

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              D  ++    +  LVR+M +  TP    Y   P   +   +++A   F+  K
Sbjct: 252 QHIDLSLQPMLADGRLVRLMPEWSTPFPGFYLYVPSREQMPPRVRALMEFLIEK 305


>gi|66048147|ref|YP_237988.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258854|gb|AAY39950.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 300

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 129/267 (48%), Gaps = 14/267 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F     +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L LT +G + +   
Sbjct: 15  FVRAVETGSFSAAGRDLGLGQPNVSRYVAALEDHLQTRLLHRSTRKLMLTPEGERYYADA 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   +E ++  L+  +V PSG LR+A    L    +  ++  FL  YP++ + L +++
Sbjct: 75  LRILDSVEQSESSLR-GNVAPSGLLRVACPTALAHTFIVPHVASFLARYPELSLDLQIND 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +++  +  + AIR+   ++ S++  R L +      A+  YL+    P S  +L +H+
Sbjct: 134 RYVNLIDEGVELAIRIGH-LEDSAMRARPLASFERVCVASRAYLEKRGSPSSPDDLKEHD 192

Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            + +  L        NW     D P+       L+VNS  +I +Y   G GIA  P ++ 
Sbjct: 193 CLIYTLLSTGT----NWRFKNTDVPVS----GRLRVNSPEAIREYVNAGLGIAQGPQWLY 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCY 273
           ++   + NL  ++ + + P   + F Y
Sbjct: 245 EEGLRSGNLQLLLNEYVAPPVPIQFVY 271


>gi|193077071|gb|ABO11829.2| putative transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 311

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G +
Sbjct: 11  NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I IQ
Sbjct: 71  VYQRCLDMVNAAQAVMESSGQFHVEPEGVIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    +
Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLSKHGTPNHPHD 189

Query: 186 LDKHNLITFGD 196
           L +H  I  G+
Sbjct: 190 LKQHECIYLGE 200


>gi|156977509|ref|YP_001448415.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156529103|gb|ABU74188.1| hypothetical protein VIBHAR_06296 [Vibrio harveyi ATCC BAA-1116]
          Length = 295

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 33/288 (11%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +L+ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVNSYIRVVEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLI--LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           I++QLI  L  +  ++S+D      R  + + S S     L       YAAP YL+    
Sbjct: 121 IKLQLITTLPGQIPELSLDL--FISRELEQLNSLSFKASPLFEHKAQFYAAPSYLEKHGT 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISC---LQVNSYLS 230
           P S++EL +HN++ +G                ++P+ E       RIS        +  +
Sbjct: 179 PHSVEELSQHNVLIWG----------------EKPVREIKTNHGKRISLSGNFATTNPEA 222

Query: 231 IMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           +      G GI L  + ++K++     LV I+ D+     TVY  YP+
Sbjct: 223 LFHGAKRGMGILLSNNVMIKEDLRSGALVPILPDITADEATVYAYYPK 270


>gi|27367205|ref|NP_762732.1| putative Lactate-responsive regulator, LysR family [Vibrio
           vulnificus CMCP6]
 gi|27358773|gb|AAO07722.1| Predicted Lactate-responsive regulator, LysR family [Vibrio
           vulnificus CMCP6]
          Length = 299

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 124/273 (45%), Gaps = 8/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE+  L+ S +S++I+ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVEQGSFSKVAEENSLTNSVVSKRIARLEEEIGAQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF   +P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPTISGDLILADAVAEFCNQHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+   +
Sbjct: 124 MSLDNRFVDLVSGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPVIPSD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L +HN + +        E   W    ++     R++ C   ++  ++ +  + G GIA +
Sbjct: 183 LTQHNCLQYAYQTTGASE---WEFKGEKGNYIVRVAGCFSTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           P  +V     N  LV I  + +     +Y  YP
Sbjct: 240 PRCLVYHDFRNGQLVDIFPEQVGKKLGIYAVYP 272


>gi|254250715|ref|ZP_04944034.1| LysR family regulatory protein [Burkholderia cenocepacia PC184]
 gi|124879849|gb|EAY67205.1| LysR family regulatory protein [Burkholderia cenocepacia PC184]
          Length = 301

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 134/304 (44%), Gaps = 22/304 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++ G+
Sbjct: 4   FSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V  +L      + +    PSG LR++  +  G   L  ++  F+  +P + +
Sbjct: 64  VYYARAKRVLGELADADALVADRGDAPSGPLRVSVPVAYGLRRLAPHVAAFVARHPKLDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+     D AIRL     ++ ++ R L T   +  A+  YL     P +  
Sbjct: 124 DLQLTDERVDLVSARIDVAIRLGDAAPTAEVVARPLGTFRRYVVASRAYLDAHGTPATPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------G 238
           EL  H  + F   + +    F         +G  R + + V   +      VL      G
Sbjct: 184 ELVDHACLRFHFGVDQQTWTF---------VGAQRTTQVVVTGRMKSNHSEVLREAALDG 234

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDV-ITPS---FTVYFCYPEALKNTGKLKAFRNFIF 291
           +GIALLPD++V    +   L R+ +   +TP      +   Y    + + ++ AF +F+ 
Sbjct: 235 AGIALLPDWLVDTDLEAGRLQRLFDQYDVTPGSARAVITALYLPNQRGSKRVTAFIDFVE 294

Query: 292 LKAR 295
             AR
Sbjct: 295 SLAR 298


>gi|153835148|ref|ZP_01987815.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148868382|gb|EDL67499.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 295

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 134/282 (47%), Gaps = 21/282 (7%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +L+ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVNSYIRVVEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLI--LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           I++QLI  L  +  ++S+D      R  + + S S     L       YAAP YL+    
Sbjct: 121 IKLQLITTLPGQIPELSLDL--FISRELEQLNSLSFKASPLFEHKAQFYAAPSYLEKHGA 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCV 236
           P +++EL +HN++ +G+         N +  +    G+ RIS        +  ++     
Sbjct: 179 PQTVEELSQHNVLIWGE---------NPIREIKTNRGK-RISLSGNFATTNPEALFHGAK 228

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            G GI L  + ++K++     LV I+ D+     TVY  YP+
Sbjct: 229 RGMGILLSNNVMIKEDLKSGALVPILPDITADEATVYAYYPK 270


>gi|221065606|ref|ZP_03541711.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|264679844|ref|YP_003279753.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|299530586|ref|ZP_07044005.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|220710629|gb|EED65997.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|262210359|gb|ACY34457.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
 gi|298721427|gb|EFI62365.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 305

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 139/288 (48%), Gaps = 6/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V  +GSFT  A++   +Q ++++Q++ +E  + ++L  R+ RG++LTE G+ 
Sbjct: 5   DAMHMFVRVVETGSFTKVAQEFATTQPTVTKQVAAMEARLKVRLLNRNTRGVSLTEAGAL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   +   +  ++    +  G+LRI +++  G+ +L     +F+   P +Q+ 
Sbjct: 65  YYEKCKIIVSDVAEAENVVKVRQTQVQGQLRIGSSVAFGRRVLIPLAMDFMKHNPQVQVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++  D+  +  D A+RL K +  SSL  R L        A+  YL+    P    +
Sbjct: 125 LSFEDRYTDLVANGIDVALRLGK-LADSSLGARMLGVNPWVLVASNTYLRKHGTPRRPSD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+ + +  +  +  + +        P+  P    L+ N+  +++       GIA LP
Sbjct: 184 LKEHSTLIYSSV--QGNDIWRLRNASGEPVSIPVTGRLRSNNLSALLAAARSHMGIAALP 241

Query: 246 DYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y+ +D+    R++E + T   P   ++  YP       K+++F  F+
Sbjct: 242 RYVAQDSLKDGRVVEVLKTCRLPEQEIHAVYPSPRLVPQKVQSFIAFL 289


>gi|90413364|ref|ZP_01221357.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90325606|gb|EAS42075.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 360

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 126/283 (44%), Gaps = 27/283 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR    +A+ GSF  AA  L +  +++SR++  LE  +G +L  R +R + LT  G  
Sbjct: 66  DDLRALIAIAQHGSFRAAANALDIPPTTLSRRLQRLEDTLGSQLVIRDSRNVALTPLGRN 125

Query: 66  LHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +  +LE T  EL + SS  P G LRI+  + L    L     +FL LYP++ +
Sbjct: 126 YFERCQPLLGELEATTSELMDTSSSNPRGALRISAPVGLLTYQLMPLFNQFLALYPEVTL 185

Query: 125 QLI-LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            L  L N+  D S +  D   R+ ++P  +SS    ++        A+P YL     P  
Sbjct: 186 SLNHLSNQHHDYSPEQYDVVFRVGQQP--NSSFAAARIGESQRTLVASPEYLAQYGIPRH 243

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---------RISCLQVNSYLSIMQ 233
             EL+ H  +         + +F W  T    I            R++   +N   S+ Q
Sbjct: 244 PDELNHHARLA-------TVPEFEWALTCKTDIAHSETIWINSPVRMAIADLN---SVKQ 293

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
             + G GIA LP+Y+V D      L  +++D  +P   +Y  Y
Sbjct: 294 AAISGLGIACLPNYVVADALEKSTLTTMIDDWYSPPRPIYMLY 336


>gi|330971262|gb|EGH71328.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 305

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 135/290 (46%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL +Q
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQHGTPLDLQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
            L +H +I +            ++A  D    E   +C + VNS    +  C  G G+  
Sbjct: 183 ALAQHQVIEYFSTSTGKRYGLEFMA--DGMDVEHASACSIAVNSADGYVAACEAGFGLIQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y V     +  LV ++     P   +   YP   + + +++ F +++
Sbjct: 241 VPRYHVAAQLRSGGLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWL 290


>gi|319780112|ref|YP_004139588.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166000|gb|ADV09538.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 306

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 3/187 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF  V   G+ + A   + +S +  S +I  LE  +G++LF R  R L  TE G+ 
Sbjct: 5   DNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTEHGTV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +V   +   +  +   S +P G +R+   + LG+ L+   + +F   YPDI+++
Sbjct: 65  FYGGAKQVLEAITEAEAAVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPDIEVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L + ++DI  +  D A RL   I+ SSL  R ++       AAP YL+   EPL  QE
Sbjct: 125 LRLSDHNVDIMKEGIDVAFRL-GIIEDSSLRMRGIMECERVLVAAPKYLEARGEPLEPQE 183

Query: 186 L--DKHN 190
           L   KH+
Sbjct: 184 LIGKKHD 190


>gi|260550578|ref|ZP_05824787.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406289|gb|EEW99772.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 296

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 133/276 (48%), Gaps = 8/276 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR GSFT AA ++ +SQS++S  I GLE  +G+ L  R  R ++ T  G
Sbjct: 6   NYNDLYAFLMVAREGSFTKAAGKMGISQSALSHTIRGLEERLGMLLLTRTTRSVSPTAAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  S  + +++     L     +P+G +RI  +    + +L   LK+    YPD+Q
Sbjct: 66  ERLKQTISASFDQIDNELSLLTSFRDQPAGTVRINASSHAIREVLIPKLKKIAGDYPDVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI  +  D  +R    +    +  R    + M   A P Y +    P + 
Sbjct: 126 VELTANSGMVDIVAERFDAGVRFGSRVADGMIAVRISPDVKMAVIATPAYFEKYGIPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
           ++L  H  I F       +  + W    D    + +I    + N    I++    G G+A
Sbjct: 186 KDLVSHQCIGFRLTTQGSV--YAWEFVKDGQETKIKIQGQWIFNESYDIVEAVRAGFGLA 243

Query: 243 LLPDYIVKDN---PNLVRIMED--VITPSFTVYFCY 273
            +P+ +++++     L++++E+  +  P + +Y+ +
Sbjct: 244 YIPEDLIREDLKEGKLIQVLEEYSIQFPGYHLYYPH 279


>gi|238024732|ref|YP_002908964.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879397|gb|ACR31729.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 301

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 134/305 (43%), Gaps = 31/305 (10%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF  AA  L +S S++S  +  LE  +G++LF R  R + LTE G +L
Sbjct: 8   ELTAFVAIAEQRSFRAAARALAVSPSALSHAMRSLEARLGVRLFNRTTRSVALTEAGERL 67

Query: 67  -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            HRV       LE+   E+  +  +PSG +RI       + L++  L +FLL YPDI ++
Sbjct: 68  LHRV-GPALSDLESAVDEVSTAQNRPSGSVRINAPETSARLLIRHVLPDFLLRYPDIHVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            + D + IDI  +  D  IR    +    +  R    +   A A+P YL     P    +
Sbjct: 127 FVTDTRLIDIVAEGFDAGIRALDDVPRDMIAVRFGPDMRFIAVASPAYLARHPAPERPAD 186

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYC 235
           L +H  I      G L+        W   +D      +   L VN  L++      ++  
Sbjct: 187 LMQHRCIRHRFESGALL-------RWDFQLDG-----KTCSLDVNGPLTLGNPNAMIEAA 234

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G G+A +P+  +++   +  L+ +++    P   +   YP        L+ F   +  
Sbjct: 235 LAGIGVAWVPESQIEEHLASGRLIALLDAWSVPLPGLALYYPANRHPPAPLRLFTQAV-- 292

Query: 293 KARDW 297
             RDW
Sbjct: 293 --RDW 295


>gi|56709126|ref|YP_165171.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56680811|gb|AAV97476.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 314

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 9/182 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  WD  R F  VAR G+ + AA  LH+  +++SR+I  +E  +G+ LF RH  G  LTE
Sbjct: 21  SLVWDDTRAFLAVARHGTLSAAAGALHIGIATLSRRIDRMEEALGVPLFVRHQSGYQLTE 80

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESS---VKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            GS L     E    +E   I L   +    + +GK+R+AT  +    L+   L EF   
Sbjct: 81  DGSDL----IEKAEAMENAAIALSTGAKLQAQLTGKVRLATAENFASGLIIPALPEFQAR 136

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P + ++++ D   +++    AD A+R+ KP + +  +QR L T+    YA+  Y++  R
Sbjct: 137 FPGLMVEIVTDITTVNVHRRDADLALRMVKPQRGNVTLQR-LGTLGYGLYASEAYVQG-R 194

Query: 179 EP 180
            P
Sbjct: 195 NP 196


>gi|311106187|ref|YP_003979040.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760876|gb|ADP16325.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           88 [Achromobacter xylosoxidans A8]
          Length = 297

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 130/291 (44%), Gaps = 13/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  +A +GS T AA  L  S  ++SR +  LE +VG++L +R  R  +L+E G  
Sbjct: 5   EDLEAFIHIAETGSLTKAARNLGRSLQAVSRSLVALEDDVGVQLVHRTTRHSSLSEAGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R       ++   ++E+ +    PSG LR+   +  G + L   + E++  YP I++ 
Sbjct: 65  FFRRVKPAMEEIGEARLEVADRRAAPSGLLRVGAPVLFGPDFLVPVIAEYMREYPQIEVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D++    D  +R+   +  S L  R+L  +    + AP Y +    P    E
Sbjct: 125 LQLTDAFVDLAAAGLDLVVRIAD-LPDSGLQGRRLGALRRVVFGAPSYFEQHGRPAHPSE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H  I    +     +   W   +D   R +G       + N+  +I     +G GI 
Sbjct: 184 LRQHACI----VRTVDQQSGQWAFQIDGKRRNVGVR--GPFRTNTMAAIYSAVSVGLGIG 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P + ++   D   +  I+E+  +    ++  + E      K++AF +++
Sbjct: 238 YSPLWQIRHLLDTGQVEVILENFESKPVPIHALWQENRLPPAKVRAFVDYL 288


>gi|171056951|ref|YP_001789300.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774396|gb|ACB32535.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 302

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 138/276 (50%), Gaps = 18/276 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  +  + SF+ AA +  ++Q + ++ ++ +E  +G +L +R  RG+T TE G+  +
Sbjct: 7   VQLFIRIVETASFSKAAAEFGITQPTATKSVAAMEQRLGARLLHRSTRGVTPTEVGALYY 66

Query: 68  RVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +  +++       L +S V   G LRI+T++  G+ ++   +  ++ L+P++ + 
Sbjct: 67  DKCKLIAREIDAADNLATLLQSQV--GGTLRISTSVAFGRRVVVPLVLRYMRLHPEVTVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D++ +++     D AIR+ + +  S+L  R L T      AAP YL+    P +  +
Sbjct: 125 LAFDDRYVNLVEQGVDLAIRMGR-LADSALGARYLGTNPWLMAAAPAYLREHPAPATPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241
           L  H  + +  +      D  W  ++  P GE    P    L+ N+  +++     G G+
Sbjct: 184 LAAHACLVYSSV----QGDERW--SLTTPAGEETSVPVRGPLRSNNLSAVLAAARAGMGL 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           A+LP Y+ ++   +  +  ++ D + P+  V+  +P
Sbjct: 238 AVLPWYVARESVADGAITPVLADHLLPAQAVHAVFP 273


>gi|330819736|ref|YP_004348598.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327371731|gb|AEA63086.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 307

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 140/296 (47%), Gaps = 18/296 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F  VA   SFT AAE L + +   S  +  LE E+G +L +R  R + LTE G  
Sbjct: 5   DALRIFVRVAEMASFTRAAESLGIQKGRASNTVRALEAEIGARLLHRSTRTVQLTEDGHA 64

Query: 66  LHRVTSEVYHKLETTQ-IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++   ++    E  Q +   E  V   G+LR+    ++ +++L   L  F+ ++P++ +
Sbjct: 65  FYQRAQDLLADAEALQSMFTSEHDVPLRGRLRVDLPSEIARSVLVPALPGFIAMHPELAL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D+  +  DC +R+   I   SL+ R+L ++ M   A+P YL     P +++
Sbjct: 125 EVSSTDRRVDLIQEGIDCVLRI-GGIVDESLVARRLGSLRMVNAASPEYLARHGVPRNLR 183

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG-SGI 241
           EL    H L+ +          ++++    RP        L VN   S+  Y   G +GI
Sbjct: 184 ELATQGHRLVNYTMSFANRPTVWDYIER-GRPATLALPCALSVN---SVQTYHAAGLAGI 239

Query: 242 AL-------LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L       L  Y+  ++  LV ++ +    S  V+F        + +++AF ++I
Sbjct: 240 GLIQASRWRLLSYL--ESGELVEVLPEYRPASLPVWFVVAHRRNLSRRVRAFMDWI 293


>gi|307130795|ref|YP_003882811.1| LysR-family transcriptional regulator [Dickeya dadantii 3937]
 gi|306528324|gb|ADM98254.1| LysR-family transcriptional regulator [Dickeya dadantii 3937]
          Length = 302

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 134/299 (44%), Gaps = 18/299 (6%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  +   GS T AA+ L +S++ ++R ++ +E     +L +R  R L+LT +G  + R
Sbjct: 8   QVFVAITEQGSLTGAAQALEMSRAMVTRYLAEMERWAEARLLHRSTRQLSLTSEGEAVLR 67

Query: 69  VTSE---VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              E   V  KLE      +E    PSG +R+  +  L Q  L   +  +L  YP   + 
Sbjct: 68  HCRELIAVSQKLEMPSRGRKE----PSGLMRLTCSPSLAQTTLVAAITTYLRRYPKTAVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  D AIR+   +  S LI R+L        AAP YL     P  +++
Sbjct: 124 LQVASQTLNLIEERIDLAIRITSQLD-SGLIARRLGGCPSVVCAAPSYLAEHGTPQRVED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN +T+     K +  F         +  P       N  L +++  + G+G++L P
Sbjct: 183 LAVHNCLTY-SFFGKSLWRFT---RKGEAVAIPVSGSFSANDSLMLLEAALNGAGVSLQP 238

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298
            Y V D   +  L+ +  +V      +Y  Y    +    L+A  +F+   F    +WK
Sbjct: 239 VYSVTDLIASKRLIALFPEVQPQELDIYAVYHSRERMPSALRALVDFLAEWFDSNLEWK 297


>gi|293606820|ref|ZP_06689171.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292814824|gb|EFF73954.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 334

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 126/253 (49%), Gaps = 12/253 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F  VA  G+F  A ++L + +S++SR +  LE ++G +LF R  R  +LT +G 
Sbjct: 28  YSGVVAFIAVAVEGNFAKAGDRLGIGRSAVSRSVQKLEDQLGTRLFVRTTRTTSLTAEGR 87

Query: 65  KL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +     H   + +   L+  + EL+E    PSG LR+ +T+  G+ ++   L+ F   +P
Sbjct: 88  QFYEQCHPGVARIVQALDNMR-ELREG--PPSGLLRVCSTVGFGRKVVAPLLQGFCREHP 144

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L LD+   D + +  D + R  + ++ S +I +K++ + M   A+P Y      P
Sbjct: 145 GIAVELWLDDAPTDFAAERVDVSFRNGR-MEDSQVIAKKIIPMQMLLCASPAYAAAHGLP 203

Query: 181 LSIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + ++ +H  + F     +  E +F    T+ R +  P +  L  N    ++Q  + G 
Sbjct: 204 ACVDDIARHRCVNFRLASGRIYEWEFKVAGTL-RKVAPPAM--LSFNDADLVLQAVLDGH 260

Query: 240 GIALLPDYIVKDN 252
           G+A +  Y V ++
Sbjct: 261 GMAQMAGYQVGEH 273


>gi|326315097|ref|YP_004232769.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323371933|gb|ADX44202.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 313

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 127/274 (46%), Gaps = 8/274 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  VA   SFT AAE L + ++S S  +  LET++G +L +R  R + LT+ G 
Sbjct: 4   FDRMHTFVRVAELASFTQAAEVLGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    ++   ++  Q   Q +      G++RI  +  + +N++   L E L  +P ++
Sbjct: 64  AYYERCKDLLADVDELQSMFQNADGGGLRGRVRIDMSTGMARNVVVPRLPELLARHPGLE 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L    + +D+  +  DC +R    +  +SL+ R L    +   A+P YL+    P ++
Sbjct: 124 VELSSTERRVDVVREGFDCVLRT-GAVVDASLVARPLGPARLVNCASPAYLRVHGTPQTL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H L+ F + +      F   A VD  +   P    L VN+  + +  C+ G GI 
Sbjct: 183 DDLGDHRLVHFVNTLGARSGGFE--AVVDGTLAAIPMQGALTVNNAEAYIAGCLAGLGII 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P   V D      LV ++     P   +   Y
Sbjct: 241 QVPRLGVVDLLAQGALVEVLPQHAAPPMPLTLMY 274


>gi|119386211|ref|YP_917266.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119376806|gb|ABL71570.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 298

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 129/288 (44%), Gaps = 14/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F + A   +F   A +L ++ +S++R I+ LE  +G++LF R  R ++LT  G+   
Sbjct: 7   LKTFLLAAEKRNFAQVARELDMTPASVTRTIAALEDMLGVQLFVRTTRQVSLTGDGAIFA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    LE  + E+  +     G+LRI   + LGQ +L   L  F  LYP I +++ 
Sbjct: 67  SRIEQAVEALEAARTEMANAHKADEGRLRINAPMSLGQRVLPQILCGFRDLYPRIDVEIR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D AIR+         I RK+  +     AAP             E+ 
Sbjct: 127 LTDRFLDMVEEDFDLAIRISAAPSDKFTIWRKICPVKRLLVAAPGTPH--------AEVK 178

Query: 188 KHNLITFGDLIPKCMEDF--NW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             N ++ GD +    +    NW L+  +  +       +  N+   +      G+G+ LL
Sbjct: 179 HPNELSPGDCLAYSADSHRENWQLSDGNASVTIAAGRSISANNGDLLAHMAADGAGVVLL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P +I+     +  LV+I+ D   P   +   YP   K   ++ AF +F
Sbjct: 239 PVFILAQYLRSGRLVQILPDWTPPQIWLTLYYPPYQKLPPRIAAFSDF 286


>gi|150376059|ref|YP_001312655.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150030606|gb|ABR62722.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 315

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 16/299 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF      GS   AA +L  S +++SR +S LE  VG++L +R  R L L+E G +
Sbjct: 5   DAMKVFVAAIDEGSLAGAARRLKRSPTAVSRALSFLEAHVGVELLHRTTRTLKLSEAGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V   LE   +     S  P G L I+    LG+ +L+  L +FL LYP +  +
Sbjct: 65  YAAACRRVLTDLEEADMLAGGESSAPRGILTISAPPILGEEILRPMLDDFLDLYPTVSAR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQ 184
           L+L ++ +++  +  D A+R+   +  SSLI  +L   +     A+P YL N        
Sbjct: 125 LLLLDRFVNLVDEGVDVALRIGH-LADSSLISTRLGGDVRRVVVASPGYLANHPRIEEPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGS 239
           +L KH ++ F +     +E +++   +   I  PR       C+ VNS  +       G 
Sbjct: 184 DLAKHQILAFTNF---GLESWSFTPAMGSSI--PRTVQFTPRCI-VNSVRAAAASAAAGR 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+  L  Y V +   +  L  ++     P    +   P+   +  K++AF +F   + R
Sbjct: 238 GLTRLYSYHVAEYVRDGRLEIVLAGAEHPPLPAHLLAPQGRMSVPKVRAFVDFAAPRLR 296


>gi|13470517|ref|NP_102086.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14021259|dbj|BAB47872.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 308

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 129/283 (45%), Gaps = 7/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A SGSF   A  L +S   +++ ++ LE  +G +L  R  R  +LT  G   +
Sbjct: 7   MTAFVKAAESGSFAATASALGISPQMVAKHVTYLEARLGARLLNRTTRKQSLTVIGKSYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +++       E+  KP G LR+   +  G + +   +  +L  +P + + L+
Sbjct: 67  DRCKVALAEVDWADAIADEARGKPRGLLRVNAAVSFGAHCVTPVVARYLSSHPSVDVDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  D  +   R+  P+  S+L   +L      A  +P YLK    P  + +L 
Sbjct: 127 LNDRFVDLIDDGFEAVFRI-GPLGESNLGAIELAPFQTIACGSPAYLKERGMPSIVSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            H  + FG+       D  WL   D    +  +   L+VN+  S+++  + G G+AL+ +
Sbjct: 186 NHECLLFGNWPEPTFSD--WLFVRDGLTSKASVHGRLKVNNPASLLEAALAGFGLALIGE 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             V+ +     LVR++ +  TP   ++  +    + T KLK F
Sbjct: 244 EAVRTHLATGRLVRVLPNYETPPRPIHLLFHPDRRQTPKLKTF 286


>gi|239503585|ref|ZP_04662895.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB900]
          Length = 296

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 134/280 (47%), Gaps = 8/280 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR GSFT AA ++ +SQS++S  I GLE  +G+ L  R  R ++ T  G
Sbjct: 6   NYNDLYAFLMVAREGSFTKAAGKMGISQSALSHTIRGLEERLGMLLLTRTTRSVSPTAAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  S  + +++     L     +P+G +RI  +    + +L   LK+    YPD+Q
Sbjct: 66  ERLKQTISASFDQIDNELSLLTSFRDQPAGTVRINASSHAIREVLIPKLKKIAGEYPDVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI  +  D  +R    +    +  R    + M   A   Y +    P S 
Sbjct: 126 VELTANSGMVDIVAERFDAGVRFGSRVADGMIAVRISPDVKMVVIATQAYFEKYGIPQSP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
           ++L  H  I F       +  + W    D    + +I    + N    I++    G G+A
Sbjct: 186 KDLVSHQCIGFRLTTQGSV--YAWEFVKDGQESKIKIQGQWIFNESYDIVEAVRAGFGLA 243

Query: 243 LLPDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEAL 277
            +P+ +++++    NL++++E+  +  P + +Y+ +   L
Sbjct: 244 YIPEDLIREDIKEGNLIQVLEEYSIQFPGYHLYYPHRRQL 283


>gi|16119440|ref|NP_396146.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15161974|gb|AAK90587.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 313

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 127/282 (45%), Gaps = 4/282 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA +GSF  AA+ L+L +SS+S+ +  LE+ +G KL  R  R +T+T +G   H
Sbjct: 7   IRTFVRVAEAGSFAKAADTLNLPRSSVSKLVQDLESHLGTKLVERTTRSVTMTTEGIAYH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+     +  S   P GKLR+     L   +L   L +F   YPDI + L 
Sbjct: 67  ERALKLLADLDDMDGTVAGSRSAPKGKLRVDIGSVLANQILIPALPDFQHQYPDIDLMLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  D+  +  DC IR    +  SS+  RKL  +     A+P YL   + P    +++
Sbjct: 127 VSDRPADLISEGIDCVIR-GGALGDSSMKARKLCELDYVICASPTYLDGLQLPERPDDIE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           K  ++++            +    +R    P    + VN   + +   + G GI     +
Sbjct: 186 KFRIVSYFSASSGKRFPLRFQRGAERSEYFPTSGGVSVNESTAHLNALLSGLGIGQSFGF 245

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + +    +  LV ++ D    +  ++  YP       +L+AF
Sbjct: 246 LARPHFKSGALVELLPDWTPDNHPLHLVYPADRFPNPRLRAF 287


>gi|13473471|ref|NP_105038.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14024220|dbj|BAB50824.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 301

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 129/258 (50%), Gaps = 7/258 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +GSF+ AA  L ++ S++S+ I+ LE  +G +L  R  R L LT +G+  
Sbjct: 11  EIEVFVRVVEAGSFSAAARTLRMTPSAVSKLIARLEARLGARLVSRSTRKLQLTPEGTAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   +   + E    +     +LR+ T +  G + L   L  FL  Y +I + L
Sbjct: 71  YDSGLRILADMAAAEREAAAGAAPRG-RLRVNTYVPFGVHRLIPLLPRFLERYSEISVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  ID+  + AD AIR   P+  S L+ RKL    +   AAP YL+   +PL+  +L
Sbjct: 130 VLTDSVIDLMAERADVAIRA-GPLGESRLVARKLGQSLVVVVAAPSYLEAHGKPLTPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D HNL+ FG +  + ++ + ++    R +  P      V+   ++    + G+GI+ L  
Sbjct: 189 DGHNLMGFGFV--RHIDGWPFVDAEGRAVMVPITGNTLVSDGEAMRLMTLAGAGISRLAR 246

Query: 247 YIVKDN---PNLVRIMED 261
           + V  +     LV ++ED
Sbjct: 247 WHVAADIAAGRLVALLED 264


>gi|15597416|ref|NP_250910.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|12230968|sp|Q01610|OPRR_PSEAE RecName: Full=Putative transcriptional regulator
 gi|9948244|gb|AAG05608.1|AE004648_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 306

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 124/272 (45%), Gaps = 17/272 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VAR G+FT AA QL ++QS++S+ ISGLE  + I+L  R  R ++ T  G +L    
Sbjct: 12  FVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAGERLLNAI 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              + ++E    EL     KPSG +RI     + + LL   L   LL YPDI+++  ++ 
Sbjct: 72  GNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIKVEFDINY 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              DI  D  D  +RL   I    +       + M   AAP Y     +P S ++L  HN
Sbjct: 132 GFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRSPRDLVDHN 191

Query: 191 LITF-----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            I       G L       + W     DR +       L  N+  +I+   + G GIA L
Sbjct: 192 CINMRMQSGGGL-------YAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIAWL 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           P+       +   L+R++E+   P F  Y+ Y
Sbjct: 245 PEEEFAPHIEEGRLLRVLEN-WCPLFPGYYLY 275


>gi|298487206|ref|ZP_07005255.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158230|gb|EFH99301.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 305

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 135/292 (46%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMIVIPALPEFARRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL++ 
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASRDYLQRYGTPLNLP 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L +H +I +            ++A    VD+ +       + VNS    +  C  G G+
Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMAGGVEVDQALA----CSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V        LV ++     P   +   YP   + + +++ F +++
Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290


>gi|194289522|ref|YP_002005429.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223357|emb|CAQ69362.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 303

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 16/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A  GSFT AA    ++  ++SR +  LE  +G++LF R  R + LT++G    
Sbjct: 13  IELFCLAAELGSFTAAAVAAGVTPPAVSRTVQRLEERLGVRLFVRTTRQIRLTDEGRVYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +     +L   + ++      P+G+LRI+         +   L  F   YP+++I + 
Sbjct: 73  EQSRGALAQLLDAERQISGQQRAPAGRLRISLPTPYAHYRVLPVLPAFREQYPEVEIDVH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+++D + D  D ++R R P   S+LI RKL    +   AAP YL+    P S ++L 
Sbjct: 133 ISNRNVDFADDTYDLSVRGRAP-DDSNLIARKLEDAELVVVAAPGYLRRAGTPQSPEDLL 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY------LSIMQYCVLGSGI 241
           +H  I F    P       W   +    GE     +   SY      L        G+G+
Sbjct: 192 RHECIQFER--PSSGRRIPWTLRIH---GE-ETDVVTAGSYAVSEDILGGATLVRAGAGL 245

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                ++V+    +  LV +M D    S      YP A   T +++ F +F+  K
Sbjct: 246 FQTYRFVVEQDLRDGALVEVMRDYGGSSRPFVLLYPSARHVTRRVRVFVDFLVEK 300


>gi|157371330|ref|YP_001479319.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323094|gb|ABV42191.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 301

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 127/265 (47%), Gaps = 14/265 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V + GS   A  +L  S  +++R I+ LE   G +L  R  R L  TE G +
Sbjct: 5   DELAIFVAVIQHGSLAAAGRKLRRSAPAVTRAIASLEQRFGARLVERTTRRLAPTEAGLR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      + H+ +   ++  ++ +  SG LRI + +  G+  +   +  FL LYP +QI+
Sbjct: 65  LAERAHLLLHEYQAAVLDTADTQL--SGLLRITSPVQFGRKHVAPVVMAFLDLYPQMQIE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++++D+  +  D A+R+   +Q SS + R+L  +     A+P YL    EPL   +
Sbjct: 123 MVLNDRNLDLIDEGLDVAVRIGH-LQDSSRVARRLGQVSRVTVASPAYLALRGEPLEPAQ 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ I            F      DR    PR+   +V + L   +    G GIA L 
Sbjct: 182 LVDHDTIVGTQRASLREWRFGPQENGDRVRLTPRLLLNEVETQLLAARA---GKGIARLL 238

Query: 246 DYIVKDN---PNLVRIMEDVITPSF 267
            Y V D+     LVR++     P+F
Sbjct: 239 SYQVADDLAAGTLVRLL-----PAF 258


>gi|152977901|ref|YP_001343530.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150839624|gb|ABR73595.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 301

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 146/304 (48%), Gaps = 18/304 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L  F+ +   GS   AA +L ++  ++S  +  LE  +G+ LF R  R + LTE G 
Sbjct: 6   YGYLTYFHEIVNKGSIAAAARKLEIAPPAVSNALKLLERHLGLPLFTRTTRKMELTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T ++   L+     +++ + KP+G +RI T+      L++ +  EF   YPDI++
Sbjct: 66  RLFDSTKDMIRGLDLMMESVRDLAEKPAGAVRITTSTISYLLLIRPHFAEFCERYPDIRL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +++  +DI  +  D  IR    ++ + + ++ L  I +  YA+  YL    +P S+Q
Sbjct: 126 EISVNDGIVDIVKEGFDVGIRFGDRLEQNVVAKKLLDPIRLGLYASESYLSKYGKPESLQ 185

Query: 185 ELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L +H L     +T     P  +       +V+ P      S L  N    I++   +  
Sbjct: 186 DLSRHKLLGYRFVTANRTYPLTLNQNGREISVNMP-----YSILTNN---LIVELDAIRQ 237

Query: 240 GIAL--LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIAL  L + +V    D+   + ++E+  T    +Y  Y +  +  G+++   +F+  K+
Sbjct: 238 GIALGRLFEPVVNALHDSEKFIPVLEENWTHYPALYLFYMQHSQKAGRVRVLIDFLLEKS 297

Query: 295 RDWK 298
           R  K
Sbjct: 298 RPNK 301


>gi|107027812|ref|YP_625323.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693478|ref|YP_839011.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897186|gb|ABF80350.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651478|gb|ABK12118.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 301

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 16/285 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     VAR+ SFT AA QL +SQS++S  +  LE  +G +L  R++R +T TE G +L 
Sbjct: 13  LTALIAVARAKSFTRAAVQLGVSQSAVSHAVRALEERLGARLLARNSRTVTPTEVGERLL 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            + +    +++     L +    P G +R+       + +L   LKEFL  YPDI+++L 
Sbjct: 73  HIVAPRLKEIDAEMSALSDLGGSPRGSIRVTAPDYPSRTILAPKLKEFLPKYPDIKVELS 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +DN+ +D+  +  D  +RL + I    +  +    +         Y      P +  +L 
Sbjct: 133 IDNRFVDLVAEQFDAGVRLGEAIAQDMIAVQIGPDVRFTVVGTKRYFATHAVPRTPGDLI 192

Query: 188 KHN-----LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            H+     L+  G L       + W      RP+       L  N     +   V G G+
Sbjct: 193 HHSCVNLRLMAHGGL-------WAWEFEKGGRPVNVRVDGQLACNDIYECLAGAVAGLGL 245

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           A +P+ + +      +L+ ++ D        Y  YP   + +G +
Sbjct: 246 AYVPEDLAEPYIKAQHLIPVLTDWCPSWGGFYLYYPSRRQPSGAM 290


>gi|218662030|ref|ZP_03517960.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 298

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 23/298 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR GSFT A ++L ++Q+++S QI  LE  VG  LF R  R + LTE 
Sbjct: 7   FPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTET 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E +  L       ++S     G L I++T       L   L  F L +P I
Sbjct: 67  GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC---RE 179
            ++    +  ID S +  D AIR         L   +L+ +      +P   ++    RE
Sbjct: 124 AVRFQASSDIIDFSREQIDVAIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAESAGGIRE 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCV 236
           P   ++L K +L   GD+  K   +   +   D   RP  +     ++ ++ +S      
Sbjct: 183 P---RDLLKFDLFDAGDIWWKQWFEAAGVTETDLDRRPRNQLGSQAVEADAAIS------ 233

Query: 237 LGSGIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G G+A+L          L R+    E   +     +  YPE  +N  K+KAFRN+I 
Sbjct: 234 -GHGVAILNPAFYAAEIALGRLYQPFELTRSDGKAYWLAYPENRRNLPKIKAFRNWIL 290


>gi|188535174|ref|YP_001908971.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis
           Et1/99]
 gi|188030216|emb|CAO98102.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis
           Et1/99]
          Length = 302

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 13/286 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F     SGSFT AA +LHL+ S++S+ I+ LE  +G +LF R  R L LT+ G   +   
Sbjct: 14  FVASVESGSFTAAAGRLHLTSSAVSKSIARLEARLGSRLFERTTRSLVLTDAGQAFYDTC 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + V  +L   +  L      P+G+LR+A     G+  +   L +F   +P++Q+ L   +
Sbjct: 74  ARVLSELAEAESVLAAQRSIPAGRLRVAVPHTFGRLHVMPLLNDFCRQHPEMQLNLSFSD 133

Query: 131 KDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  +  D A+R+  +     SL  R L +  +   AAP YL     P ++ +L++H
Sbjct: 134 RFVDLFEEGVDVAVRIGGRGNYPPSLGVRYLGSERLIFCAAPDYLAQHGTPQTLTQLERH 193

Query: 190 NLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             I +    G   P  +   + L T  R +   R++     +  S +   V G G+A + 
Sbjct: 194 QAIVYDRIDGSTSPWHVVSPDGLITT-RTVAH-RMALADGEAQRSAV---VAGLGVAQMA 248

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +++K+      LV ++     P   +Y  +P   +   K+ A  N
Sbjct: 249 TWLIKEPLARGELVTLLPQRAVPGLPLYVVWPRRKQLMPKVDALLN 294


>gi|1050749|emb|CAA61941.1| GSTR protein [Rhizobium leguminosarum]
          Length = 298

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 131/294 (44%), Gaps = 10/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + V   V   GS + A+  L    +++SR++S LE  +  +L  R  R +TLTE G  
Sbjct: 5   DAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRKITLTEAGRS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+  ++E  +         P G+L +   I  G+  +   + +FL  YPDI ++
Sbjct: 65  YVEAAREILDRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPDINLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YLK    P    +
Sbjct: 125 LMLGDRLSNLVEDHIDVALRIGN-LPDSNLIATRLGAIRRTVYASPDYLKRNALPRHPGD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ +TF  +        +W  T   R +  P  S L VN+     +  V G GI  +
Sbjct: 184 LAAHDCVTFEGM----ASMLSWTFTEGKRDLTVPIRSRLAVNTA-EARRRAVAGLGITRV 238

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y      +   LV ++ D   P   V+  YP       KL+A  +F   + R
Sbjct: 239 LSYQAAHAESADLLVPLLADFEPPPAPVHLVYPAQGLVPLKLRALLDFATPRLR 292


>gi|68250121|ref|YP_249233.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           86-028NP]
 gi|68058320|gb|AAX88573.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           86-028NP]
          Length = 305

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGIM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GIA L
Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|70728384|ref|YP_258133.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342683|gb|AAY90289.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 322

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAEAGSFTAAAVQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ T   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILAYVEEAEAEASDAHARPAGQLKVHTMTGIGQHFVIDAIARYRKTHPDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+  D+  +  D +I L + +  S  + ++L   +    A+P Y+K    P    +L
Sbjct: 126 TMANRVPDLLDEGYDVSIVLARELPDSGFVSQRLGMTYSIVCASPAYVKANGCPQKPSDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+   +    W  T D P G+  +    S   VNS  ++    + G G+ 
Sbjct: 186 LNHACL---RLVSPVIPLEKW--TFDGPEGQEMVTINSSPFLVNSADAMKTAIISGMGVG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y   +      LVR+M    +    +Y  YP       K+K +  ++
Sbjct: 241 VLPVYAAIEGLRTGTLVRVMPKYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|17548049|ref|NP_521451.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430355|emb|CAD17120.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 298

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 130/297 (43%), Gaps = 30/297 (10%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V  +GSFT AA QL +S   + + +  LET +G +L  R  R  +LT+ 
Sbjct: 2   DKLRSMETFVAVVDAGSFTEAAMQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     V  ++   +  ++    +PSG LR++     G  ++      F   +P +
Sbjct: 62  GRVFYEDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLTATFQQAHPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D++ +  D A+R+   +  + L+ + L    M   A+P YL     P +
Sbjct: 122 RVELDLSNRMVDLADEGFDLAVRI-GALGDADLVAKPLCAYRMVISASPDYLARHGRPET 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIG---EPRISCLQVNSYLSIM 232
             +L  H          +C+    W       L+  D       +P  SC   N    + 
Sbjct: 181 PADLPAH----------RCLSHMVWNSRNAWQLSGWDGTTSWRDDPAFSC---NDGHGLR 227

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              + G+G+ L P+ +V ++     LVR+++        ++  Y +  +   KL AF
Sbjct: 228 MAAIAGAGLLLQPEVLVAEDLASGRLVRVLQTYAPQPRPIHLVYRQDRRPLPKLTAF 284


>gi|170696183|ref|ZP_02887317.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138911|gb|EDT07105.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 342

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 138/287 (48%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +  + SF+ AA+ L+L ++S+S  I  LE  + ++L  R  R L+LT  G+  +
Sbjct: 16  MQVFTRIVDANSFSRAADALNLPRASVSNIIQNLEAHLKVRLLQRTTRRLSLTPDGAAYY 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +     S   P G+LRI     LG+ L+   L EF   YP +++ L 
Sbjct: 76  ERCVRILAEVREAESAFSISGHVPRGRLRIDMPGALGRLLVMPELFEFHAKYPALELVLG 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            + + ID+  +  DCAIR+   ++ SSL+ R++  +     A+P YL +   P ++  L 
Sbjct: 136 FNERRIDLIQEGIDCAIRM-GALEDSSLVARRIGLVPYVTVASPGYLSSHGVPRTVDALQ 194

Query: 188 KHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           KH  +  F D   + + DF+++    + +       + VN   + +   + G GI  LP 
Sbjct: 195 KHTAVKYFIDQSGRAL-DFDFVVGA-QAVQVSMRGTVAVNDAEAYLSCGLKGLGIIQLPF 252

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ +   +   L+ ++ D       +   YP  L  +  ++ F ++I
Sbjct: 253 FMARTYLETGKLIEVLPDFKPLPRPISAVYPHKLHLSPNVRMFVDWI 299


>gi|91778246|ref|YP_553454.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690906|gb|ABE34104.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 331

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 131/299 (43%), Gaps = 26/299 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFVRVVEAGSFTGAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTTAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   + T + E   +  +P+G LR+ +   +GQ+ +   +  +  LYP++ ++L
Sbjct: 66  LTRCQQILADVSTAEEEASCAHERPTGALRMHSFASIGQHYVLPAISRYRALYPEVTVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    AD A+     + +S L+   L T      A+P Y++    P    +L
Sbjct: 126 TLSQRMPDLFEGSADVAVIGASTLPNSDLVSLPLGTTFSILCASPAYVRAHGAPQKPADL 185

Query: 187 DKHN-LITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H  LI      P     +E  N   T++  +  P    + VN   S++     G GI 
Sbjct: 186 AHHECLILHTPAFPPHDWVLEGPNGCETME--VNGP----VHVNIAESLIVAIREGMGIG 239

Query: 243 LLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y     ++D   LVR++         +Y  YP            R FI  K R W
Sbjct: 240 MLPLYAAISGLRDG-TLVRVLPQYTAQKMNIYALYPS-----------RKFIDAKTRTW 286


>gi|78062062|ref|YP_371970.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969947|gb|ABB11326.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 297

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 119/249 (47%), Gaps = 9/249 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +VA  GSFT AA +L +SQS++S+ I  LET +G++LF R  R ++LT  GS+L 
Sbjct: 9   LTAFLLVAEEGSFTRAAARLGISQSALSQVIRALETRLGLQLFARTTRSVSLTAAGSRLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +      ++++   E+     KP+G +R+       Q++LQ  +   L  YPDI+++L 
Sbjct: 69  ELIGPAMGEIDSGLDEITHLRDKPAGTIRLNADEYAVQHVLQPAVTRLLPAYPDIRVELN 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPLSIQEL 186
           +D    DI     D  +R R  + +  +I  ++   H M    AP Y  +   P   ++L
Sbjct: 129 IDYGLTDIVSGRYDAGVR-RGGLVAKDMIAVQISPPHPMSVVGAPAYFASRPAPKLPRDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H  I     +P   E F W+    +   E R+     L  NS  S     + G G+A 
Sbjct: 188 TDHLCINL--RLPTHGEYFPWV--FAKAGKEQRVKVDGQLVGNSIGSARDAALSGLGLAH 243

Query: 244 LPDYIVKDN 252
           LP   V + 
Sbjct: 244 LPHAYVAEQ 252


>gi|319793821|ref|YP_004155461.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596284|gb|ADU37350.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 320

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 16/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  SG F+ AA  L ++ S+IS+ ++ LE  +GI+L +R  R L LT +G   
Sbjct: 11  EMEAFVQVVESGGFSAAARLLDMTPSAISKLVARLELRLGIQLVHRSTRKLQLTPEGLHF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  ++ V   ++  +     +   P G++ I  ++  G + L   +   L ++P+I + +
Sbjct: 71  YERSTRVLADMDEAE-RCAAAGAAPRGRVSINASVSFGHHKLVPLVPRLLEMHPEITLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  + AD AIR  + + +S L+ R+L        A+P YLK    P + QEL
Sbjct: 130 ALTDRIVDLMDERADIAIRWGQ-LPASDLVARRLGETSQAIVASPGYLKKYGTPHTPQEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + HN + +           +W   VD R +  P    ++     ++ Q  + G+G A L 
Sbjct: 189 EAHNRLGWS----YRRNTPDWPLRVDGRTVTMPVAGPVRAGDGETLRQLAIAGAGAARLS 244

Query: 246 DYIVK---DNPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y ++   D   LV ++E+     I P   VY      L    +++A  +F+
Sbjct: 245 LYHIQHDIDAGRLVPLLEEFNPGEIEPIHAVYIGKAGTLP--ARVRAVLDFL 294


>gi|167566326|ref|ZP_02359242.1| LysR-family transcriptional regulator [Burkholderia oklahomensis
           EO147]
          Length = 306

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 15/296 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 5   DRFDVFRAVVEAGSFTGAANVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVALTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    V  + E    E +       G LR+ +T++    ++   L+EF   +P ++++
Sbjct: 65  FYKRCLRVLAEAEEAIDEARGEHGGMRGSLRVTSTVEYALKVVAPALREFTSQHPALRVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK--LVTIHMHAYAAPHYLKN-----CR 178
           L       D+  D  D AIRL +  Q   L  R   L T  +    +P  L         
Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRFEQFQDLPYRGVCLDTYDVRPVVSPALLAERGVVRIE 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVL 237
            P ++  L +        +    + D      V RP  +P++    V    S+++ +   
Sbjct: 185 SPDALACLPQLGHSRLSQVASWLLRDREGREHVFRPAAKPQM----VADNASVLRAFAQQ 240

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+ALLP+++V+   DN  L+  + D   P  +VY  YP       K++A+ +F+
Sbjct: 241 GSGVALLPEWLVRDDLDNGTLIDALPDYRFPPQSVYALYPSTRHVPQKIRAWIDFM 296


>gi|157376667|ref|YP_001475267.1| putative transcription regulator [Shewanella sediminis HAW-EB3]
 gi|157319041|gb|ABV38139.1| conserved hypothetical transcription regulator [Shewanella
           sediminis HAW-EB3]
          Length = 303

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 133/277 (48%), Gaps = 16/277 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DK+  F  V R+GSF+ AA+Q  +S S+ SR I  LE  +G+ L  R  R +  T+ G +
Sbjct: 3   DKIVYFLHVVRTGSFSDAAKQYGISASAGSRWIIELEENMGVSLLKRSTRKVVPTQAGER 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V  +++    E+Q    +  G +RIA+T    +N L   + E+L  YP +  +
Sbjct: 63  LFDRFCHVNTEIDDILTEIQNLGNEDRGVIRIASTPLFAKNFLSRIVGEYLREYPYVSFR 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQS-----SSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++    D+D  +D  D +IR     Q      S L++R L+   + A  +P Y++    P
Sbjct: 123 IVETAYDVD-HIDEVDFSIRANATYQGYLEKDSLLVKRSLLQYPLKACCSPSYIEQFSCP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
              ++L KHN +    L+        W+  +D       I+  ++V     +    + G+
Sbjct: 182 EFPEDLKKHNCLYASTLVGGN----KWVFELDGEFTTVDIAQTVEVEDSEFLKTVALTGA 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP--SFTVYF 271
           GIA LP+ ++KD   +  LV ++++       F++YF
Sbjct: 238 GIAYLPNQLIKDELADGRLVPVLDNYSNSQFEFSLYF 274


>gi|229526471|ref|ZP_04415875.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|298499753|ref|ZP_07009559.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|229336629|gb|EEO01647.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|297541734|gb|EFH77785.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 299

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVG 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L +HN + +        + +F     N++  V              ++  ++ +  + G 
Sbjct: 183 LARHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA +P  +V     N  LV +  + +     +Y  YP
Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272


>gi|301168380|emb|CBW27970.1| putative LysR family transcriptional regulator [Bacteriovorax
           marinus SJ]
          Length = 306

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 3/288 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L    +VA + SF  AAE L++S  +ISR I+ LE  +G+ L  R  R + LT  G+
Sbjct: 6   FDGLIALKLVAENQSFKAAAELLNISTPAISRIIAQLEESMGVTLLTRTTRSVRLTNAGA 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 S    ++   Q  ++    KPSG LRI T +   Q+ L+  +K+FL+ YP+IQ+
Sbjct: 66  IFLEQVSPAMEQILKAQDFIKTYGEKPSGPLRINTPVIFYQHYLKDFIKKFLIKYPEIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D++  +I     D  IR    I    +  +    I     A+P+Y K    P+  +
Sbjct: 126 EIFSDDQATNIFERGFDAGIRADDIIAKDLIAFKLFGPIDFVTVASPNYFKEFGRPMHPK 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN IT        + D        +         L +N+  +I Q  ++G GI   
Sbjct: 186 DLLEHNCITLRFGSGSGIYDKWEFEEKGKEFNVKIHGNLILNNSENIRQAALIGQGIVYT 245

Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               V+++    R   ++      S   Y  YP   + +  L+AF  F
Sbjct: 246 EKGCVEEDLKAGRLEIVLNKYKCQSTGFYLYYPHKTQISPALRAFIEF 293


>gi|167565953|ref|ZP_02358869.1| Transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 301

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 20/306 (6%)

Query: 1   MSFDWDKLRVF--YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           +  +W     F   VVA   SF  AA  L +S S++S  +  LE  + ++LF R  R + 
Sbjct: 3   VGVNWGGPATFRGIVVADQRSFRAAARTLGVSPSALSHAMRNLEARLDVRLFNRTTRSVA 62

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LTE G +  R        LE    E    + +PSG +RI+ + +  + L++  L  F+  
Sbjct: 63  LTEAGEQFLRRVRPAIADLEDAVNEAAAHN-RPSGSIRISASENAARPLIRHVLPGFVAA 121

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YPDI ++ ++D + +DI  +  D  IR+ + +    +  R    +   A A+P YL +  
Sbjct: 122 YPDIHVEFVVDTRLVDIVANGFDAGIRVLEDVPRDMIAIRFGPDMRFAAVASPAYLAHHA 181

Query: 179 EPLSIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            P +  +L +H  I F    G L    +E     A++D  +  P    L + +   ++  
Sbjct: 182 PPQAPHDLMRHRCIRFRFESGTLYRWDLEHRGKTASID--VDGP----LTLGNLNLMVDA 235

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIME--DVITPSFT-VYFCYPEALKNTGKLKAFRNFIF 291
            + G GIA +P+++  ++  L R++      +PSF  +   YP        L+ F   + 
Sbjct: 236 ALEGIGIAWVPEHLAAEHLALGRLVHLLPEWSPSFPGLCLYYPANRHPPTALRLFAQAV- 294

Query: 292 LKARDW 297
              RDW
Sbjct: 295 ---RDW 297


>gi|254188559|ref|ZP_04895070.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157936238|gb|EDO91908.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 313

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP++Q+ L
Sbjct: 66  LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPEVQVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++    P   Q+L
Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEQHGAPQRPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             H  +  G + P    D  W   +  P GE  ++      +VN   ++      G GI 
Sbjct: 186 ASH--VCLGMVAPGLYWD-EW--KLVGPQGEQSVTLAPPPFRVNVAEALAAGIREGMGIG 240

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y       N + VR+M +  +    +Y  Y           A R ++  K R W
Sbjct: 241 VLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287


>gi|288958304|ref|YP_003448645.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288910612|dbj|BAI72101.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 300

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 145/300 (48%), Gaps = 20/300 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +RVF  VA  GSF+     + ++ SS ++ +S LE  +G++L  R  R L LT +G 
Sbjct: 7   WE-MRVFLRVAAQGSFSATGRDVGMTPSSTAKLVSRLEERLGVRLVERSTRKLRLTVEGD 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 + +  +L+    E+   +  P+G +R+  ++  GQ+ L   L EFL  +P I +
Sbjct: 66  LYRERAAALLGELDALDAEVAGGARAPTGLIRVNASVPFGQHCLLPLLPEFLHAHPGITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+     D A R   P+  S+L+ ++L  +     A+P YL+    P+S  
Sbjct: 126 DVTMTDEVVDLYAARVDVAFRA-GPLSDSALLAQRLGVVRRLIVASPAYLERRGVPMSAA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV------DRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +L+ H+ + F         +F   A V       R +     + +  N+  ++    +LG
Sbjct: 185 DLEAHDCLGF---------NFRRAAAVWPLKSGGRLVDREVPTRILANNGETVRHMALLG 235

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+A L DY V+D+     LV ++ED +  +  ++  Y    +   +++AF + +  + R
Sbjct: 236 LGLARLADYHVRDDLREGRLVAVLEDALVDTEEIHAVYTGRDRAPRRVRAFLDHMAPRMR 295


>gi|239816244|ref|YP_002945154.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802821|gb|ACS19888.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 316

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 130/269 (48%), Gaps = 19/269 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+ + GS+T AA +L +S++++S++I+ LE  VG+ L  R  R + LTE G 
Sbjct: 10  WMHLHWLIVLGQQGSYTAAAARLGVSKAAMSQRIAELERAVGVTLVRRTTRSMRLTEAGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T E + ++  + ++ Q+ + +P G +R+   + LG+  L   L +FLL +P I++
Sbjct: 70  QLVDQTREPFEQIAHSFLQAQDHAGEPRGLVRVTAPVALGRQQLLPRLADFLLAHPSIRV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++   ++ +  D A+R       + +  R L        A+  YL+    PL+  
Sbjct: 130 EMELSDRLSSLATEGFDLAVRHAASPPDTHVAWR-LCDTRSVLVASRAYLRRKGTPLAPP 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR---------ISCLQVNSYLSIMQYC 235
            L +H+ + +    P+  E   W  + +R  G  R            L  N+  ++    
Sbjct: 189 MLTEHDCLHY----PRGQETNVW--SFERRGGRARHAERVTVPIAGPLAANNSEALRDAA 242

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMED 261
             G GIALLPD+  +       LV ++ D
Sbjct: 243 QAGLGIALLPDFSAQSGLQAGKLVEVLPD 271


>gi|190893473|ref|YP_001980015.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190698752|gb|ACE92837.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 297

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 145/298 (48%), Gaps = 28/298 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE G   
Sbjct: 6   RIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121
            R  S++  +++     ++E++ +  G+LRI+        D+GQ+L+     +F    PD
Sbjct: 66  FRSASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLI-----DFAAENPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-- 179
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H  A P ++++  E  
Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKISDFRVHLCATPDFIEHHPELE 179

Query: 180 -PLSIQELD---KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            P  I  +      N  T G +     ++  +   V  PI        +VNS  + ++  
Sbjct: 180 HPSDISNVPFIVDTNSRTQGSIRFYNPDNTTFAVAVSGPI--------EVNSPHATLRAA 231

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GIAL+PD+I +   ++  L+ +  D I     +Y  YP       K++ F +++
Sbjct: 232 LAGIGIALIPDFIARKPIESGELLTLFNDYIPTDRGIYAVYPHRRYLPAKVRIFVDYL 289


>gi|91778696|ref|YP_553904.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691356|gb|ABE34554.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 301

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 131/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+ RVF  VA  GSF  AA  L L ++S+S  +  LE  VG++L +R  R + LT  G++
Sbjct: 5   DQYRVFIQVADMGSFIKAAHALELPRASVSAAVQQLEASVGVRLLHRTTRRVQLTADGAQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   +E      Q    + SG+L++     + + L+   L   L  +P +++ 
Sbjct: 65  LRERVRALLTDVEEIDQLFQIRQRQVSGQLKVDMPSRIARRLVVPALPGLLRNHPALRLA 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DCA+R+   +  S+L+ + L  I M   A+P YL+    P    +
Sbjct: 125 LNSTDRAVDLVQEGVDCAVRV-GTLYDSNLVAQSLGNIAMINCASPGYLREYGVPERPDD 183

Query: 186 -LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            LD H  + +    P    +  W      R    P +S + VN+  + +  C  G G+  
Sbjct: 184 LLDGHLCVGYAS--PTTGRELPWDYLAAGREAQIPVVSRVIVNNAENYISCCCEGIGLIQ 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +P + V+   +   LV +M +       V   YP   + + +L AF
Sbjct: 242 IPRFDVQHLLNAGTLVEVMPEFRAAPMAVSALYPHRRQRSRRLVAF 287


>gi|148974131|ref|ZP_01811664.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965828|gb|EDK31076.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 298

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 137/289 (47%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  +A + + + A ++L LS +  S  IS LE  +G++L +R  R ++LTE+G  
Sbjct: 4   EHLKLFVRLASTHNISMAGQELGLSPAVASSHISKLEDNLGVRLVHRTTRKVSLTEEGEA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   ++  +  +   S  P+G LR+  +   G+  L   L  FL  YP +++ 
Sbjct: 64  FLPHAEEVLSSVDAAKSAVGVGSDSPTGTLRVTASASFGRLHLIPALPGFLERYPGLKVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               +  +D+     D AIR+ + ++ S+LI RKL T      A+P YL    +P + Q+
Sbjct: 124 FRFSDSVVDLVEGGFDIAIRISE-LKDSTLIARKLATDKRVVCASPDYLIKYGKPATPQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L+ H  I+   L        NW   T + P         + ++  ++    V G GI + 
Sbjct: 183 LNGHQCISLIGL-------ENWTFHTENGPKTIKATGSFRADNGEALRDAAVGGLGITVT 235

Query: 245 PDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289
            ++   +   +  L++++ED  +T    ++  YP       K++AF ++
Sbjct: 236 SNWCAYEQLKSGQLIQVLEDYPLTSEPAIWAVYPSTRLLAPKVRAFIDY 284


>gi|118593258|ref|ZP_01550643.1| Transcriptional Regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118434149|gb|EAV40805.1| Transcriptional Regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 298

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 134/291 (46%), Gaps = 21/291 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  VA+ GSFT A  +L LS   +S+ +  LE ++  +LF R  R ++LT+ G+ 
Sbjct: 5   ETMRAFVAVAQEGSFTAAGRRLGLSTKLVSKYVQHLEGQLKTQLFNRTTRSVSLTDVGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L+     ++E     +G++R+      G   L   L  FL  +PD+++ 
Sbjct: 65  YLEHCRPILEQLDDLDSLVRERQGALAGQIRLTAPTGFGSTRLSEALVPFLRKHPDVELD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  + +  +  D AIR+   ++ S+LI RKL  + +   A+P YLK    P   + 
Sbjct: 125 MRLTDHRLALVEEGLDLAIRI-GALRDSTLIARKLAGMPLVLCASPDYLKRHGRPQDPRA 183

Query: 186 LDKHNLITFGDLIPKCMEDFN------WLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           L  H           C+ D N      W           R+S  ++ NS  ++    + G
Sbjct: 184 LSTH----------VCLVDSNQTELNIWRFHCGGEEHVVRLSGAVRSNSPGALAHMAMGG 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GI + P Y ++D   +  L R++ D  T +F +Y  YP     T +++A 
Sbjct: 234 LGITIAPLYAIEDALKDGRLERVLPDYETDTFGLYALYPPNRHLTRRVRAL 284


>gi|304395013|ref|ZP_07376897.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304357266|gb|EFM21629.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 300

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 137/273 (50%), Gaps = 10/273 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  VA +GSF+ AA Q  + QS++S+QI+ LE  +G+ L +R  R + LTEQG    
Sbjct: 8   IQTFVRVAEAGSFSAAARQNGMKQSAVSQQIAALEEALGVVLLHRTTRKMALTEQGQHYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   +E  + +L+  +    GKL I     +G  L+  +L  F   +P +Q+ + 
Sbjct: 68  QQVRQLLSAMEELEQQLRPGTQPLHGKLHIQLPSGIGHRLMP-HLIAFQQAHPALQLNIA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++  D+  +  D AIRL +    ++L  R L+T+     A+P ++     P +  +L 
Sbjct: 127 LEDRLSDLIAEGVDVAIRLSES-PPATLAARSLITVETILVASPEWIAQNGMPETPDDLQ 185

Query: 188 KHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F  + P   ++  + + +V  P+     S  + N+  ++MQ    G GI  L  
Sbjct: 186 RHPHIRFSGISPDAPLQLVSGMTSVSVPVK----SVFRSNNSEALMQALEAGLGIGGLQL 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
            I  D   +  LVR++ D   P   +Y  +P+A
Sbjct: 242 LIGADALASGRLVRVLPDWRLPDRYLYAVFPDA 274


>gi|206562644|ref|YP_002233407.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038684|emb|CAR54644.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 315

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 126/294 (42%), Gaps = 15/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G +  
Sbjct: 24  LIAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGEQY- 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL--LQGNLKEFLLLYPDIQIQ 125
              +   H+L     E     +KP G L +      G  L  L   L +F   YP+I+++
Sbjct: 83  ---AAQVHRLLVQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPDFRATYPNIKLR 139

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   +
Sbjct: 140 LIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG--RTLDAAD 197

Query: 186 LDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L    L+   D   + M    W  L  VDR   +P+   + +NSY  I+Q  +LG G++L
Sbjct: 198 LANETLLRLEDGQRQWMSWSEWFDLNDVDRQKAQPQD--ITINSYPQIVQMTILGQGVSL 255

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              Y++    +   LVR+ E   +     Y   P         + F  ++F +A
Sbjct: 256 GWRYMIDACIEAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWLFEQA 309


>gi|289624357|ref|ZP_06457311.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649651|ref|ZP_06480994.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868659|gb|EGH03368.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 303

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 140/301 (46%), Gaps = 33/301 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++TE G +
Sbjct: 7   DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMGVVLLHRSTRQVSITEDGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++   G+  +   L E   LYP + I+
Sbjct: 67  VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALYPKLDIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YLK+   PLSI E
Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGAPLSIGE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-----EPR-ISCLQVNSYLS------IMQ 233
           L  H+ +   +               DRP G      P+    ++V   LS        Q
Sbjct: 186 LANHDCLVIKER--------------DRPFGIWHLNGPQGAETVKVTGSLSSNHGEIARQ 231

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
           +C+ G G+ L   + V+ +    R+++  + P +     ++  +   L ++ K++    F
Sbjct: 232 WCLDGRGVLLRSLWDVRTDLAEGRLIQ--VLPDYRQDADIWAVHTSPLMSSAKVRVTVEF 289

Query: 290 I 290
           +
Sbjct: 290 L 290


>gi|238764597|ref|ZP_04625543.1| HTH-type transcriptional activator aaeR [Yersinia kristensenii ATCC
           33638]
 gi|238697187|gb|EEP89958.1| HTH-type transcriptional activator aaeR [Yersinia kristensenii ATCC
           33638]
          Length = 297

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 111/251 (44%), Gaps = 30/251 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LETE+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVECGSFTGAARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + + L+
Sbjct: 61  QGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLTEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P       
Sbjct: 121 TGIPAPDLITDGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLSQHGTPEK----- 174

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQY 234
                      P  M  F+WL    RP     +  P     Q+        N   +++++
Sbjct: 175 -----------PSDMTHFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIRW 223

Query: 235 CVLGSGIALLP 245
              G+GIA  P
Sbjct: 224 LKAGAGIAYAP 234


>gi|261339915|ref|ZP_05967773.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317826|gb|EFC56764.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 296

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 129/283 (45%), Gaps = 10/283 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA QL +SQS++S  +  LE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRNLEARLEVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S    ++E     L+++  +P+G +R+         +L   LK F+  YPDI 
Sbjct: 65  ERLLMRLSPHLLEIEQELTALRDTRDRPAGNIRLTAGEHAMSAVLWPVLKPFMAQYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  +RL + +    +  R    + M    + +Y +    P + 
Sbjct: 125 VEVTVDNGLTDIVDGRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSANYFERYGTPDTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           ++L  H  I     +P     + W    +R   E R+     L +N+    +     G G
Sbjct: 185 EQLQHHRCINM--RLPTRGGLYAW--EFERDGRELRVRVDGQLTLNNLPQRIDAAESGLG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
           +A +P+  V+   D   L+R++E    P    +  YP   ++T
Sbjct: 241 LAYVPEDTVREALDQGRLLRVLEAWCPPFDGYHLYYPSRRQHT 283


>gi|149923928|ref|ZP_01912315.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149815216|gb|EDM74764.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 314

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 17/291 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D+ R+F  +  +GS   AA QL    SS+SR+++ LET +G +L  R  RG   TE G
Sbjct: 7   DSDE-RLFLRIVEAGSLKAAAAQLGSDPSSVSRRLAALETRLGQQLVRRSTRGSKPTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ +   +++  + +  +  +     +P G+L +    + G   +   L++    YP + 
Sbjct: 66  ARYYEGLAQLVAQQDALEAAVAGGRDEPQGRLHVTAPPEFGVRFVVPVLEQLQRRYPALV 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L     +++    D A+R+ K +  SSL  RKL  +     A+P YL     P S+
Sbjct: 126 VELALGTAFTNLAERGLDAAVRIGK-LSDSSLRARKLGVVPRLLVASPAYLDAAGTPRSL 184

Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238
            EL +H +I++    G    +       L  V+ RP+         VNS  ++++    G
Sbjct: 185 AELPEHRVISYLTRSGVNRVRARTPRGDLREVEVRPV-------FTVNSISTLVRMVEGG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +GI L P +   D      +V + ED    ++ V   YP       K +AF
Sbjct: 238 AGINLAPRWAFADALAAGRVVALFEDHRFEAYPVQIVYPSRRYLPAKTRAF 288


>gi|325527537|gb|EGD04859.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 297

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 3/239 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT AA +L +SQS++S  I  LET +G++L  R  R ++ TE G +L 
Sbjct: 9   LLAFIAVARERSFTRAAARLGVSQSALSYTIRALETRLGVRLLTRTTRSVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +  + ++E     + E   KP+G +RI  T  + + LL   L   L  YPD++++ +
Sbjct: 69  RNLAPRFDEIEAELSAVAELRDKPAGTVRINATDYVIRTLLWPKLSPMLRDYPDLKVEFV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    DI  +  D  +RL   +    +  R    + M    AP Y      P+  ++L 
Sbjct: 129 TDYGLSDIVAERFDIGVRLGDQVAKDMIAVRISPDLKMAIVGAPAYFAQRARPVVPRDLV 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            H+ I     +P     + W    D    + R+   +  N    ++   + G G+A +P
Sbjct: 189 AHDCINL--RLPTHGALYAWELAKDGETLQVRVDGQVTFNGTYEMLDAALDGYGLAYVP 245


>gi|170744847|ref|YP_001773502.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168199121|gb|ACA21068.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 308

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 15/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A +G F  AA +L LS S++ + ++ LE  + ++LF+R  R LTLT +G+   
Sbjct: 7   LNAFVQTAEAGGFAPAAARLGLSASAVGKAVARLEDRLAVRLFHRSTRSLTLTPEGAMFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                ++ ++E  +IEL  +   PSG LR+  ++ L   L+   +  F+  YP+I + L 
Sbjct: 67  DRCRRIFSEIEAAEIELSRTRRAPSGTLRV--SLPLIGMLMMPAVMAFMRAYPEITLDLD 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  IR  +  + S L+ R+L        A+P YL     P + ++L 
Sbjct: 125 FTDRLVDVIEEGFDAVIRTGE-ARDSRLMMRRLGAFSHRIVASPDYLAARGTPRAPEDLL 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM--QYCVL--GSGIAL 243
            H  +      P   +   W    D   G      L V +  S +  Q C+   G G+A 
Sbjct: 184 AHACLH--HRYPTTGKLQRWPLVRD---GADLDLALPVTAVASTLEPQLCLAEEGFGLAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP + V+       LV ++ D +      +  +P +   + KL AF  F+
Sbjct: 239 LPLFAVQRFLRRGALVAVLRDHLREVGAFHILWPASRHPSPKLAAFVAFM 288


>gi|28198337|ref|NP_778651.1| transcriptional regulator [Xylella fastidiosa Temecula1]
 gi|182680977|ref|YP_001829137.1| LysR family transcriptional regulator [Xylella fastidiosa M23]
 gi|28056407|gb|AAO28300.1| transcriptional regulator [Xylella fastidiosa Temecula1]
 gi|182631087|gb|ACB91863.1| transcriptional regulator, LysR family [Xylella fastidiosa M23]
 gi|307579444|gb|ADN63413.1| LysR family transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 301

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 131/279 (46%), Gaps = 13/279 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +++F  V  +G F  A ++L L++S+I + I+ LE  +G++LF R  R  +LTE G 
Sbjct: 5   FDGVQLFVEVVEAGGFAKAGKRLSLTRSTIGKAIARLEMRLGVQLFQRTTRVQSLTEDGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +        +L   +  L++   + +G+L ++  +  G+  +   L+ +   +P +++
Sbjct: 65  QYYERCLRAIKELRAGEAMLEQGRREVAGRLHVSLPVLFGRQCVAPILRTYAREHPQLEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D+  D  D A+R       ++L  R+L        A+P YL    +P ++ 
Sbjct: 125 ELNFSDHHVDLIADGFDLAVRNGPLGNGTTLRARRLGNQRKILCASPTYLAARGKPHTLA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240
           +L  H+L+T+      C  D N   T+    G     P  S L+ N    I    V G G
Sbjct: 185 DLADHDLLTY------CRNDRNMAWTLPDATGALVDIPITSRLRCNDLEVIADTAVDGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           +A LP +++ +      L+ I  D  +     +  +P A
Sbjct: 239 VAWLPYWLLMERMQRGELIGIWGDRPSAVIECHVVWPAA 277


>gi|298717595|ref|YP_003730237.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361784|gb|ADI78565.1| Uncharacterized HTH-type transcriptional regulator yhjC [Pantoea
           vagans C9-1]
          Length = 294

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 143/301 (47%), Gaps = 16/301 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + L VF +VA++ +F  AAEQL +++ +IS+ +  LE  + I L  R  R + LT
Sbjct: 1   MNADKNALEVFVIVAQTRNFRLAAEQLGVTRPAISQSLRRLEDRLNISLMQRTTRSVQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119
           E G +L+   +   ++L     ++ E + +P G+LR+A +  + + +L G  L  F+  Y
Sbjct: 61  EAGQRLYAEVAPAINQLNRAVTDIAELAAEPRGQLRLAIS-SIAERMLGGELLASFITAY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCR 178
           P +++ + + +++ DI     D  +RL + I + ++I   + T     A A+P YL    
Sbjct: 120 PQVELDITVTDEEFDIVGQGYDAGVRLGEVI-AQNMIAVPVSTAQRQVAVASPSYLARAG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P   +EL  H  I  G      +  + W  A   R         L  N    ++     
Sbjct: 179 TPQHPEELVTHRCI--GWRKGPGLAPYRWEFAEQGREFDVAVNPQLTTNDMGVMIHTACA 236

Query: 238 GSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG-KLKAFRNFIF 291
           G GI+         YI  D   LV ++++ + PSF  ++ Y  + KN   KL+A  + + 
Sbjct: 237 GGGISFGMQETFQPYI--DRGELVTVLDEWL-PSFAGFYLYFPSRKNLAPKLRALIDHVR 293

Query: 292 L 292
           L
Sbjct: 294 L 294


>gi|222033251|emb|CAP75991.1| LysR-family transcriptional regulatory [Escherichia coli LF82]
 gi|312946088|gb|ADR26915.1| putative transcriptional regulator, lysR family protein
           [Escherichia coli O83:H1 str. NRG 857C]
          Length = 242

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 2/204 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELERELESLIQLNGAPSGNIRLSAGEHAARSLVWPKLKSFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    +P Y      P + 
Sbjct: 125 VELVVDNGFVDIVDGRFDAGIRLGESVDKDMIAVRIGPDMRMAMVGSPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW 207
            +L  H  I     +P     ++W
Sbjct: 185 HKLQNHRCINM--RLPTAGGLYHW 206


>gi|169796303|ref|YP_001714096.1| putative transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213156961|ref|YP_002319006.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483762|ref|YP_002325987.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301347605|ref|ZP_07228346.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301512809|ref|ZP_07238046.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301596934|ref|ZP_07241942.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332851615|ref|ZP_08433564.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332866504|ref|ZP_08437046.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149230|emb|CAM87112.1| putative transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213056121|gb|ACJ41023.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213987410|gb|ACJ57709.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332729843|gb|EGJ61177.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332734583|gb|EGJ65692.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 311

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G +
Sbjct: 11  NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I IQ
Sbjct: 71  VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    +
Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGTPNHPHD 189

Query: 186 LDKHNLITFGD 196
           L +H  I  G+
Sbjct: 190 LKQHECIYLGE 200


>gi|206559334|ref|YP_002230095.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035372|emb|CAR51248.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 295

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 129/249 (51%), Gaps = 11/249 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R +  +E  +G +L  R  R L+LT+ G   H
Sbjct: 7   MRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAG---H 63

Query: 68  RVTSEVYHKL-ETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +++ H + E  ++E   +S+  +P G L+IA  +  G ++L   +  F + +P I  
Sbjct: 64  LYLAQIRHVIDEIDRVEETIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  D  + L + I +++L++R L  +     AAPHY+     P    
Sbjct: 124 EVTIVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLKQIVCAAPHYVDRHGAPAHPH 183

Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  ++F  D + + +  F+   T  R    P  S    N  L I  + + G GIA+
Sbjct: 184 DLASHACLSFHADFMGEYLS-FDHDQT--RITVRPNKSASSNNVGL-IRNWALSGMGIAV 239

Query: 244 LPDYIVKDN 252
           LPD++V+ N
Sbjct: 240 LPDFLVQSN 248


>gi|190890986|ref|YP_001977528.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190696265|gb|ACE90350.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
          Length = 297

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 130/294 (44%), Gaps = 9/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + V   V   GS + A+  L    +++SR+IS LE  +  KL  R  R +TLTE G  
Sbjct: 5   DAMSVLLAVVEHGSLSAASRHLRSPLATVSRKISELEAHLHAKLLQRSNRKITLTEAGRS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+  ++E  Q         P G+L +   I  G+  +   + +FL  YP+I ++
Sbjct: 65  YVEAAREILDRVEEAQRTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPEINLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YL     P    +
Sbjct: 125 LMLGDRLSNLVEDHIDLALRIGT-LVDSNLIATRLGAIRRTVYASPDYLARNAPPRQPSD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ ITF ++        +W  +   R +  P  S L VN+  + +   V G GI  +
Sbjct: 184 LSAHDCITFENM----ASIRSWTFSDGKRDLAVPIRSRLAVNTAEAAVDAAVAGLGITRV 239

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y          L  ++ D   P   V+  YP       KL+A  +F   + R
Sbjct: 240 LSYQAARAETAGLLAPLLSDFEPPPAPVHLVYPSQGLVPLKLRALLDFATPRLR 293


>gi|209546207|ref|YP_002278097.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539064|gb|ACI58997.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 317

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 135/301 (44%), Gaps = 12/301 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT  
Sbjct: 7   FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++       +  + E  + +L + S+   G +R++             L  F   +P +
Sbjct: 67  GTRFVETAERMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLPRFAAQHPHL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+   + + +S   AD ++ L +P +       +L   H+  Y +  YL        
Sbjct: 127 SLELVTIQQIMSLSRKEADLSVVLDEP-KGGPYFAERLTDYHLQIYGSRDYLAKAPVITC 185

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             +L +H  +++  ++I       ++L+ V      PRI    Q +S  + +     G G
Sbjct: 186 RDDLLEHPFVSYIEEMI--FAPGLDYLSDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWK 298
           + +LP +     P LVR++   I      +      LK   +++A  +F+   ++  D +
Sbjct: 239 LCILPYFFASRYPELVRVLPAEIDLKRHYWITCHRDLKQAPRVRAVIDFLREAVRGEDAR 298

Query: 299 F 299
           F
Sbjct: 299 F 299


>gi|121594671|ref|YP_986567.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120606751|gb|ABM42491.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 288

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 133/295 (45%), Gaps = 18/295 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR F   AR  + T AAE+LH++Q+++S+ I  LE  VG  LF R  RGL LT
Sbjct: 1   MHLPLNALRAFEAAARHLNLTRAAEELHVTQTAVSQHIRNLEERVGKPLFRRLPRGLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L  V S+ + ++      L ++  +P   L +          L   L+ F   +P
Sbjct: 61  DEGRQLVPVLSDSFARIGQALQRLADT--RPREVLTVGVVGTFAVGWLLPRLRAFHESHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L+  N  +D++ +  DCAIR        +  +R L+   +    AP      REP
Sbjct: 119 FVDLRLLTHNNRVDLAGEGLDCAIRFGDGAWHGTDAER-LMPAPLAPLCAPEVAARLREP 177

Query: 181 LSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
               +L    L+     D  P       W      P   P +     +S L++ +    G
Sbjct: 178 ---ADLGAEALLRSYRADEWPA------WFTAAGAPC--PVLRGAVFDSSLTLAEAAAQG 226

Query: 239 SGIALLPDYIVKDNPNLVRIMED-VITPSFTVYF-CYPEALKNTGKLKAFRNFIF 291
           +G+ALLP  + +      R+++    T +   Y+ C  ++   T  L+AFR+++ 
Sbjct: 227 AGVALLPVRMFERELRQGRLVQPFACTAALGDYWLCRLKSRAPTDALQAFRDWLL 281


>gi|325521619|gb|EGD00398.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 313

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 136/298 (45%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD+ ++L
Sbjct: 66  LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAVARYRERYPDVHVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D AI + + +  S L+ ++L   +    AAP Y++    P    +L
Sbjct: 126 TLAQRLPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCAAPSYIEQHGVPQRPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  I  G + P    D   LA  +     PI  P     +VN   ++      G G A
Sbjct: 186 AQH--ICLGMVTPGFQYDEWILAGPNGDEVVPIEAP---PFRVNVAEALAVAVREGMGRA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LP Y       + ++VR+M +  +    +Y  Y           A R ++  K R W
Sbjct: 241 GLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287


>gi|226953053|ref|ZP_03823517.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|226836203|gb|EEH68586.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
          Length = 295

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 138/310 (44%), Gaps = 55/310 (17%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++VF   AR GSF  AA +L++S ++IS QIS LE E+GIKLF R  R +TLT++G K
Sbjct: 9   NSIKVFEATARLGSFKAAAYELNVSPTAISHQISELEKELGIKLFIRGFRIVTLTDEGKK 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V+  +  +L+ T +EL       S  + I+TT       L   L  F   YPDI++Q
Sbjct: 69  LAEVSIRLISELKQTLLEL----TTYSKHITISTTNAFAAMWLVPQLHVFKTQYPDIEVQ 124

Query: 126 LILDNKDIDISMDYA-DCAIRL----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +  D++ IDI  D   D AIR     +K IQ S +I  +        Y      +N    
Sbjct: 125 VKADDRLIDIDHDLKFDMAIRYGFVDKKHIQVSKIINDQFGLFATQQYWRDREEENSDVK 184

Query: 181 LSIQELDKHNLIT----------FGDLIPKC--MEDFNWLATVDRPIGEPRISCLQVNSY 228
           L + +    NL+           FG + P     ED N                      
Sbjct: 185 LLVTQWKNENLLKHDQSDILLQRFGQVCPTVEYFEDEN---------------------- 222

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVY----FCY----PEALKNT 280
             ++Q  + G G+A +   +V+       ++E   +PSF +      CY    P+   N 
Sbjct: 223 -QVIQAALAGQGVAYVSKILVQQTVTQGWLLE---SPSFQIEGMDNLCYYSVIPKRNLNH 278

Query: 281 GKLKAFRNFI 290
             + AF+N++
Sbjct: 279 PSVIAFQNWV 288


>gi|319780180|ref|YP_004139656.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166068|gb|ADV09606.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 296

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 138/296 (46%), Gaps = 25/296 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-- 64
           +L V   VA+ GSF  AA +L ++ S++S  +S LE  +G++L  R  R +  TE+G+  
Sbjct: 8   QLAVLATVAQCGSFRGAARELAIAPSAVSHAVSSLEARLGVRLLARSTRSVAPTEEGAQL 67

Query: 65  --KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             +L    SE+   LET  IE ++   +P+G LR+          L   L  F   YPDI
Sbjct: 68  LERLRPALSEIDLALETA-IETRD---RPAGNLRLTVPRTAAHLALTPRLGAFASAYPDI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++++++++  D+     D  +RL + +Q   +  R    +      AP Y +   +P  
Sbjct: 124 VLEIVIEDRFTDVVEGGFDAGVRLGESLQRDMIAVRIGPDLRGAVVGAPVYFEVNPKPRH 183

Query: 183 IQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            ++L  H  I F    G L       + W     R   E  +   L ++    I Q  V 
Sbjct: 184 PRDLADHRCIRFRFSSGIL-------YRWEFERGREAIEMAVEGPLILDEDHLIAQAAVD 236

Query: 238 GSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNF 289
           G+G+A +  DY+     +  L+R++ED   PSF  +F  YP   +    L+AF +F
Sbjct: 237 GAGLAFVFEDYVRAPLADGRLIRVLED-WCPSFDGFFVYYPSRRQMRPALRAFVDF 291


>gi|34496036|ref|NP_900251.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34101890|gb|AAQ58257.1| transcriptional regulator, LysR family [Chromobacterium violaceum
           ATCC 12472]
          Length = 297

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 134/296 (45%), Gaps = 22/296 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  +  +GS + AA+++ +  ++++R++  LE E+G KL  R AR L  T +G +
Sbjct: 3   DDLDLFVAIVDAGSLSAAAKRMAMPAATLTRRLQALEAELGCKLLNRSARRLVPTNEGWQ 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   L      L  +  +  G +R    + +  +LL    +  L  +P ++++
Sbjct: 63  YYEQCKPLLAALRQAADSLDATLNRVEGVVRAMAPVSMANSLLLPVWQRLLQRHPAVRLE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L N   D+     D AIR+  P   S L QRKL  +     AAP YL+    P + ++
Sbjct: 123 LVLSNGTEDVWAMGGDLAIRV-GPQPDSQLNQRKLGQVSAVLAAAPSYLEARGRPQAFEQ 181

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGS 239
           L  H+L+    L        NW L  VD   G+     P  + L VN  L  ++    G 
Sbjct: 182 LAGHDLLLTTPL-------QNWKLHRVD---GDEERSLPDGARLLVNDMLLGVRMAEAGC 231

Query: 240 GIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+ L P       + D   L RI++D   P   VY  +P+      +++A  + + 
Sbjct: 232 GVVLCPLSQCHRELADG-RLERILQDWWIPPRPVYAVWPQRRAMPARVRALLDILL 286


>gi|53722664|ref|YP_111649.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|77358738|ref|YP_338511.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|134278607|ref|ZP_01765321.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167724403|ref|ZP_02407639.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167743364|ref|ZP_02416138.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167820547|ref|ZP_02452227.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167898973|ref|ZP_02486374.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167907306|ref|ZP_02494511.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|217422239|ref|ZP_03453742.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|254359194|ref|ZP_04975466.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52213078|emb|CAH39117.1| LysR-family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|66967536|gb|AAY59093.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|134250391|gb|EBA50471.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|148028381|gb|EDK86341.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|217394470|gb|EEC34489.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 306

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 5   DRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++++
Sbjct: 65  FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178
           L       D+  D  D AIRL +  Q   L  R +   T  +   A+P     H +    
Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++  L +        +    + D +    V RP  +P +     +   +  Q    G
Sbjct: 185 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 241

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290
            G+ALLP+++V+D+     +++ +    F    VY  YP A     K++A+ +FI
Sbjct: 242 GGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 296


>gi|222149939|ref|YP_002550896.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221736921|gb|ACM37884.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 297

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 5/199 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR  SFT AA  L +S S++S  + GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLLAFAAVARERSFTRAAASLGISPSALSHAMRGLEERLGVRLLARTTRSVAPTEAGDR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +     +  +E     L E    PSG +RI T     + +L   L  FLL +P+IQ++
Sbjct: 67  LLQSIRPAFASIEDGLSALAEWRDSPSGSVRITTFSYPAKTVLMAKLPAFLLSHPEIQVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D++  DI  +  D  IR  + +    +  R    +     A P Y ++  +P +  +
Sbjct: 127 VNIDDRLTDIVAEGYDAGIRFGENVAKDMIAVRVGPDLRTIVVATPCYFEHHPKPKTPGD 186

Query: 186 LDKHNLITF-----GDLIP 199
           L+ HN I +     G L+P
Sbjct: 187 LEVHNCIGYRLASAGGLLP 205


>gi|332284460|ref|YP_004416371.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428413|gb|AEC19747.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 306

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 16/294 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F V+A S     AA  L ++  ++S++++ +E  +G+ L  R  R + LT +G   
Sbjct: 9   ELAFFSVLASSSGLGAAARSLGVTTPAVSKRLAQMEARLGVALVIRTTRRMRLTPEGEIY 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++  +  L  S   P G LR+  +   G++ +   +  F+L +PD+Q+QL
Sbjct: 69  LDHARRILAEIDEMEQLLVGSESAPKGMLRVNASPGFGRSYIAPLISRFMLKHPDMQVQL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L       S D  D  IR   P     +I R+L +      AAP YL     P + ++L
Sbjct: 129 QLSVDPPAYSSDAFDVCIRFGGP-PDGRIIARRLASNRRMLCAAPAYLARHGAPAAPKDL 187

Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239
           ++H  I+    I +  E +  W  T +R  G  +   L+V   LS       + + + G 
Sbjct: 188 ERHQCIS----IEQGGEAYGVWRLTTERD-GSRKTEVLRVQGPLSTNDGEAAVSWALDGH 242

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  ++ +     +  LV+++ D  TP   +Y  Y +  K + +++ F +F+
Sbjct: 243 GILMRAEWDIARYLSSGRLVQVLPDYQTPDADIYATYLQKHKLSARVRVFVDFV 296


>gi|323499888|ref|ZP_08104847.1| LysR family substrate binding transcriptional regulator [Vibrio
           sinaloensis DSM 21326]
 gi|323315129|gb|EGA68181.1| LysR family substrate binding transcriptional regulator [Vibrio
           sinaloensis DSM 21326]
          Length = 303

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 18/293 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++  +F  VA   SF+ AA++L +S+S +S QI  LE E+   L  R  R + LT  G 
Sbjct: 8   FERYALFSEVANQLSFSKAADKLGISRSYLSSQIHQLEQELETSLLIRSTRSVRLTSAGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           K+      +   +   + EL+ +  + +G LRI          L    +EF  ++P I+ 
Sbjct: 68  KILLKMQAINSSILQLEKELEHTESEVTGMLRITAPTIFSHRFLIDICREFQDIHPQIEF 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +     D++    D AIR        +++ +KL+       A+P YL    EP    
Sbjct: 128 DLNVGYTREDLTKTNFDLAIRATTN-PPENMVAKKLMPYQHICCASPQYLARYGEPTHPD 186

Query: 185 ELDKHNLITFGDLIPKCMED---FNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           +L +HN          C+ D     W    D      +    + +N  L +++  + G G
Sbjct: 187 QLVQHN----------CLSDPHLTEWAFFSDNTTIRVKTDGDMFINDNLLLLEAAIQGKG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +PDY+V+   D+  LV+I+        ++Y  YP  L+ + KL AF  F+
Sbjct: 237 IIKMPDYLVRQALDSGALVQILPRYFINQSSIYLIYPPQLRGSTKLAAFTEFM 289


>gi|254787258|ref|YP_003074687.1| LysR family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237684897|gb|ACR12161.1| transcriptional regulator, LysR family [Teredinibacter turnerae
           T7901]
          Length = 296

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 141/288 (48%), Gaps = 12/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R    V   GSFT AAE+L +S   +S+ +  LE ++G +L  R  R L +TE G++
Sbjct: 5   ETMRALVAVVHEGSFTKAAERLQMSPQLVSKYVGKLEEQLGARLLQRTTRSLHVTEAGAR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    +  +L     +L     +  G+LRI+  +      +   + +F   +P++ + 
Sbjct: 65  YAQRAELLLDELADMDQQLGNFQQEAKGELRISAPVSFAAKHMGPLISDFRQTHPEVTVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+++ +DI  +  D A+R+ + ++ SSLI + +  I +   A+P YL+    P   ++
Sbjct: 125 LKLNDRKVDIVDEGFDIALRIGR-LRDSSLIAKPIAPIKLVLCASPAYLEKQGTPAYPKD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ + +  L  + +        +++ +   R S +  N  L + Q  + G+GIAL P
Sbjct: 184 LADHHFLRYSYLDAQAI-------PLNQHLQRARHSLVCNNGDL-LTQAAIAGAGIALQP 235

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +I  D      LV ++ +   P FT+Y  Y        K++AF +FI
Sbjct: 236 TFIAGDAIKRGELVALLTEHTPPPFTLYAVYSHRTHLASKVRAFIDFI 283


>gi|194289221|ref|YP_002005128.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223056|emb|CAQ69061.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 307

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 131/300 (43%), Gaps = 25/300 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F   AR  SFT AA +LH++Q ++S+Q+  LE  +G++LF R  + L LT  G + 
Sbjct: 10  ELHAFEAAARHNSFTVAARELHVTQGAVSKQVRSLEAYLGVELFQRVRQRLVLTPAGERY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +   ++LE   +EL     +  G L IA+   LG   L   L +F   +P++ ++ 
Sbjct: 70  LERIAPSLNELEAATVELMAGQGR-GGVLHIASMPTLGAKWLIPRLPQFFARHPEVTLEF 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +   +  D S    D AIR    +   SL        +M        L  CR  L   E 
Sbjct: 129 VPHAQGYDFSEPDLDAAIRFGDGVWPGSLAD------YMTGR---EVLPVCRPGLLASEP 179

Query: 187 D-----KHNLITFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           D        L+ +  L    +P+   D  W AT+  P  +   S  + + +  + Q  + 
Sbjct: 180 DGVAPTPAALLRYPLLHHTTVPEAWPD--WFATLGLPTRD-AWSGARFDQFSLLTQAALS 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GIAL+P  ++++      LV      +      Y CYPE  ++   L+ FR ++   A
Sbjct: 237 GLGIALIPRCLIEEELATGALVVAHPAQVLAKKGYYLCYPEQKQHLPALRTFRAWVMEGA 296


>gi|71736118|ref|YP_274829.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556671|gb|AAZ35882.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 305

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 135/292 (46%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFAKAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMVVIPALPEFARRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL++ 
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLQRYGTPLNLP 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L +H +I +            ++A    VD+ +       + VNS    +  C  G G+
Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMADGVEVDQALA----CSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V        LV ++     P   +   YP   + + +++ F +++
Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290


>gi|304396408|ref|ZP_07378289.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304355917|gb|EFM20283.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 302

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 27/297 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VA SGSF  AA +L +S   +++ I+ LE  +G  L +R  R  +LT+ G    
Sbjct: 7   MNVFVTVAESGSFAAAAGKLLISPQMVAKHIATLEKHLGTLLLHRTTRRQSLTDVGRNY- 65

Query: 68  RVTSEVYHKLETTQIELQESSV-------KPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
                 Y + +    E+QE+         +PSG L+++  +  G   L   +  +L  +P
Sbjct: 66  ------YERCKIVLAEVQEADAIALDMQQRPSGTLKVSAPVTFGSFSLAPFVTRYLDRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D Q+ L L ++ +D   +  +  IR+   +  SS+I   L    + A A+P YL     P
Sbjct: 120 DTQVDLELSDRLVDPFEEGYEVVIRIGA-LPDSSIIAHPLKPYELIACASPAYLARHGFP 178

Query: 181 LSIQELDKHNLITFGDLIPK--CMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCV 236
            +  +L+ H  + +G   P   C   F     V+   P G      ++ N + +++   +
Sbjct: 179 ATPADLENHACLVYGIWSPSKPCRWVFTQAGKVEEVHPQGR-----MRSNDWKALLHAAL 233

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI L P  I+ +      LV+++ D   P+  ++   P   + T K+++F   I
Sbjct: 234 EGYGITLGPASILSEEIRQGRLVQVLPDYAGPARPMHVLIPAGRRQTVKIRSFVKAI 290


>gi|260769894|ref|ZP_05878827.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|260615232|gb|EEX40418.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
          Length = 299

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 8/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AEQ +L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSKVAEQNNLTNSVVSKRMARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG +R++     G  +L   + EF  L+P + ++
Sbjct: 64  LLASAKNVKQATQEAMDAVAGFGENVSGHIRMSVPSISGDLILADAVAEFCNLHPGLTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLDNRFVDLVEGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIARNGKPIKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +     +W     +     R+S     ++  ++ +  + G GIA +
Sbjct: 183 LVNHNCLQYA---YQTTGATDWEFKSAKGNYIVRVSGTFTTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           P  +V     N  LV I  + +     +Y  YP
Sbjct: 240 PRCLVYHDFRNGELVDIFPEQVGKKLGIYAVYP 272


>gi|260555370|ref|ZP_05827591.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411912|gb|EEX05209.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 311

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G +
Sbjct: 11  NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I IQ
Sbjct: 71  VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLGRYPKIDIQ 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    +
Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLSKHGTPNHPHD 189

Query: 186 LDKHNLITFGD 196
           L +H  I  G+
Sbjct: 190 LKQHECIYLGE 200


>gi|221068165|ref|ZP_03544270.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713188|gb|EED68556.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 303

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 2/186 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V   GSF+ AA    ++ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFARVIEWGSFSAAARACGMTPSAVSKLVARLEQRLGTRLVNRSTRQLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   L+  +     +   P G+LR+   +  G + L   + +FL  +PD+ + +
Sbjct: 71  YERGVRILADLDEAE-RCASTHTAPRGRLRVNANVPFGHHFLLPWVPQFLARHPDVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  IDI     D A+R   P++SS+L+ RKL    M    AP YL     P + QEL
Sbjct: 130 VLTDAVIDILEQRTDVAVRA-GPLKSSNLVARKLGATRMVIVGAPSYLARHGTPTTPQEL 188

Query: 187 DKHNLI 192
             HN +
Sbjct: 189 LAHNCL 194


>gi|206580446|ref|YP_002236343.1| transcriptional activator AaeR [Klebsiella pneumoniae 342]
 gi|288933330|ref|YP_003437389.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290511620|ref|ZP_06550989.1| DNA-binding transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206569504|gb|ACI11280.1| transcriptional activator AaeR [Klebsiella pneumoniae 342]
 gi|288888059|gb|ADC56377.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289776613|gb|EFD84612.1| DNA-binding transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 309

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 130/289 (44%), Gaps = 11/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R L LTE G   
Sbjct: 6   RMSVFAKVVELGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSLGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  + +    +L   +  P G LRI  +  + QN+L     E L  YP + + L
Sbjct: 66  YQGCRRMLFEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLARITAEMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L ++ M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVLCAAKSYLAQAGNPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ + +        E         R I + R      N  ++++++   G GIA +P 
Sbjct: 185 ASHSWLEYSVRPDNEFEIIAPEGISTRLIPQGRFV---TNDPMTLIRWLTAGVGIAYVPL 241

Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
               +  N  R   +++ PS+      VY  Y E  K   K++   N++
Sbjct: 242 MWAIEEIN--RGELEILLPSYQSDPRPVYALYTEKDKLPLKVQVCINYL 288


>gi|197295346|ref|YP_002153887.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195944825|emb|CAR57431.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 318

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 10/231 (4%)

Query: 17  SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76
           +GSF  AA QL ++ +++S+ ++GLE  +G++L  R  R L LTE+G    R        
Sbjct: 19  AGSFAAAARQLGVTSAAVSKNVAGLEKALGVRLMNRTTRTLKLTEEGEVFLRHARIALET 78

Query: 77  LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136
           L+     +      P+G++RI+T+   G N +   L   L  YP + +++  D++ IDI 
Sbjct: 79  LDAAIDTVSAQRAVPAGRVRISTSAAFGHNHVLPALPALLARYPALSVEVDFDDRVIDIV 138

Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT--- 193
            D  D A+R    I  S+L+ R +  ++    A+P YL N   P +   L  H LI    
Sbjct: 139 RDGYDIAVRGGN-IPDSALVTRPICRLNTVLVASPDYLANHGVPETPDALHAHRLIARRF 197

Query: 194 -FGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             G + P     D   + T+D P G+   + L +++  S++Q      GIA
Sbjct: 198 LSGQVAPWNFTGDDKSITTID-PSGK---AMLTLSAPESLVQAACDSVGIA 244


>gi|127510963|ref|YP_001092160.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126636258|gb|ABO21901.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 299

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 128/272 (47%), Gaps = 8/272 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GS T AAE L++S+S +S+ +  LE     +L  R  R L+LT++G   
Sbjct: 8   RMLVFASVVEHGSLTRAAESLNISRSMVSQHLKKLEHRCQSRLLNRTTRSLSLTQEGQSF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R  +E+    +  +  LQ +  +  G + +A    LG   +   +K F   YP + + L
Sbjct: 68  YRYCAELLKLAKQAETSLQPADAELQGSITLAVPQALGDGEIAPIIKTFHQHYPKVHLSL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++ +D++    D AI++    Q  S+ + +L     +  A+P Y+ +   P+    L
Sbjct: 128 LIQDRQLDLTEHQIDVAIQIGAASQ-PSVNETRLGRFDEYLVASPDYVAHHGAPVHPDNL 186

Query: 187 DKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ I   GD +P+  +  N      R    P I+C   NS    +   + G G+ALLP
Sbjct: 187 SHHHWIGLAGDRLPRHWQFENSEGERVRLQLSPFINC---NSLQGTLSLAMQGLGVALLP 243

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
             ++     N  LV+++ D       +Y  +P
Sbjct: 244 SPLISQHLANGQLVQLLPDYHLGRGALYLVHP 275


>gi|307726249|ref|YP_003909462.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586774|gb|ADN60171.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 296

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 15/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F  VA   SF  AA+ L +++S++S  + GLE  +  +L +R  R ++LTE G  
Sbjct: 7   DDLRAFMAVAEHRSFRRAADLLGVTRSTLSHAMRGLEDNLSTRLLHRTTRSVSLTEAGES 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +   L+T   E+  +   P G LRI  +    + LLQ  + EFL  YP I++ 
Sbjct: 67  LLRRIGPLVGDLDTALEEVAGAQGNPRGTLRINGSEGAIRLLLQTVVPEFLARYPGIELD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ + + +DI     D  +RL + +    +  R    +   A A+P YL +   P     
Sbjct: 127 LVAEGRLVDIVEQGFDAGVRLGEAVPRDMVAIRLGPDMRFLAVASPGYLVSHPAPTMPDA 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H  I     +P   + + W       D  I  P    L +++   I++  + G GIA
Sbjct: 187 LLQHQCIR--QRLPSG-KRYRWEFLKRGQDMAIDVP--GALTLDNTQLIVEAAIDGLGIA 241

Query: 243 LLPDYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +P+   +    +  LV ++ED   + P   +YF     +  +  L+AF + +   A
Sbjct: 242 YVPEPYARAALSDGRLVAVLEDWCPLIPGLFLYFLGTRHMPTS--LRAFIDMVRAAA 296


>gi|167625190|ref|YP_001675484.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167355212|gb|ABZ77825.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 297

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V   GSF+ AAE L+++ SS++R I  LE +    L  R  R L LTE G +  
Sbjct: 5   MRIFIKVVELGSFSKAAEVLNMAPSSVARNIDNLEQDFNAVLLKRSTRQLLLTEAGEQFL 64

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E+ +  L +  ++P G LRI+     G+  +   L  FL  YP ++I++ 
Sbjct: 65  TGARKLVSDEESLKASLSQQELQPEGVLRISVFEGFGRVKVCPILPGFLAQYPKVKIEID 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D AIR+  P   SSL  R L+T      A+P YL     P    +L 
Sbjct: 125 LDNQLVDLHSENIDIAIRIGSP-ADSSLHARMLMTNQTSLCASPTYLAQFGSPKKPDDLL 183

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +HN +    L+ +  +   W      +    P    L       I++  +   GI LL  
Sbjct: 184 QHNCL----LLDRDRQRTYWHFHKAKQYKKVPVQGNLTSRGGTPILEAAIHHGGIVLLSS 239

Query: 247 YIVKD---NPNLVRIMEDVITPSFT------VYFCYPEALKNTGKLKAFRNFI 290
           +++ D   + +LVR + +  TPS +      +Y  Y         ++AF +++
Sbjct: 240 WMMDDLIQDGSLVRCLPE-WTPSLSEQSSGDIYALYSGGKHMRPVIRAFIDYL 291


>gi|254372082|ref|ZP_04987575.1| transcription regulator [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151569813|gb|EDN35467.1| transcription regulator [Francisella novicida GA99-3549]
          Length = 299

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 141/291 (48%), Gaps = 19/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
              FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT +G  L 
Sbjct: 14  FETFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 73

Query: 68  RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                + ++++  + +L ES  K PSG L+I+TT    QN+L   +KE+   +  ++I++
Sbjct: 74  NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTTSFFAQNILINLIKEYSKKFSKVKIEV 132

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++ K  +   + AD  + +   P +   ++ RK+ T      A+P Y+     P +I +
Sbjct: 133 SIEEKMPNFKSNEADIILGVNWTPPE--DIVARKIATTRYVLCASPAYINKNGSPSNISD 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242
           L  HN I     +         L  + +    P+   S +  N+ +  ++ CVL   GIA
Sbjct: 191 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +YIVKD   N  L+ +++D       +Y  YP+      K+K F N +
Sbjct: 243 QFHEYIVKDEIRNGQLIELLKDDFLDEQDIYIYYPKNKFVQPKVKEFVNLV 293


>gi|152988572|ref|YP_001349664.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963730|gb|ABR85755.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 304

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 129/278 (46%), Gaps = 15/278 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F V+   GSFT AAE+L  S+  +S++I  LE ++G+ L +R  R L+LT  G
Sbjct: 3   DLKDLAAFAVLVELGSFTRAAERLGCSKGQLSKRIGALERQLGVILLHRTTRRLSLTAAG 62

Query: 64  SKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + L    +       +       LQES     G++R+   + LG+ L    L++F   YP
Sbjct: 63  AALLPEAQALRAQAQRARQAVARLQESV---EGQVRVTLPVSLGETLFDALLEDFQARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L L N   D+  +  D AIR     Q + L+ R L  +     A+P YL    EP
Sbjct: 120 LLRVELDLYNGLRDLVGEGFDLAIRA-GVDQDARLVARPLFVLQEITCASPAYLARHGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239
           L   EL +   +    L         WL      +    +S    +++ S+++   L G+
Sbjct: 179 LRPGELRERECL----LNSHYSGHEEWLYHRRHRLERVAVSGFLASNHYSLLKKAALAGA 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA LP Y+V D   +  L  ++ D  T S  ++  +P
Sbjct: 235 GIARLPSYMVHDELGDGRLAWLLRDYQTRSTPMFLVHP 272


>gi|330950453|gb|EGH50713.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 294

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 11/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  +ISR+++ LE ++G++L +R  R ++LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSVSLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H  ET +  L+  + K SG LR+      GQ ++   L   +   P + + L 
Sbjct: 66  PHAKTMLHTSETARATLKGDTGKASGVLRVTAPSVFGQTVIMPLLPVLMQENPALSVDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL    +P  + EL 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLMRRGQPSVLDELR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  IT        M  + ++     P+          NS  ++   C  G G+A+L  +
Sbjct: 185 QHPCITL-----HAMPYWTFIRE-GGPVAIRAQGTFSANSVEAVRTACKQGLGLAMLTYW 238

Query: 248 IVKDN---PNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286
            V+      +L++I  EDVI    +V    P   +   +++ F
Sbjct: 239 DVQQEIRAGSLLQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLF 281


>gi|170734982|ref|YP_001774096.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821020|gb|ACA95601.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 307

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 124/264 (46%), Gaps = 16/264 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  V R+GSF+ AA +L +  +++SR+I   E  +G +L +R  R L  + +
Sbjct: 2   LDLNDLALFVQVVRAGSFSEAARRLRMPANTLSRRIDQFEGHIGTRLLHRSTRKLAPSTE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G  L    +    ++   +IE Q +   +P+G +R+A    L + +    L EF   +P 
Sbjct: 62  GLALFERYAPALDRI--FEIERQHADGQEPAGTVRVAAMAGLFEVIKLEWLAEFYARHPR 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I  +LD+   D+  +  D A+R+      S  + R++    M   A+P YL+    P 
Sbjct: 120 ISIDFLLDDTPSDLIAERIDLALRIGIETGGSFRV-RRIAPGTMILAASPAYLERRGTPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           + +EL  H+ +T      + M    W   +  P G   IS      VN    +MQ C+ G
Sbjct: 179 TPRELADHDCLTVSSRQGRSM----W--RLQGPRGTQEISIDSRFSVNDMRVVMQACLAG 232

Query: 239 SGIALLPDYIVK---DNPNLVRIM 259
            GIAL+P  +     D   L R++
Sbjct: 233 LGIALVPQVLAAAAIDEGKLARVL 256


>gi|307301326|ref|ZP_07581088.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306903782|gb|EFN34369.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 302

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT A+  L++ +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRAFLRVVETGNFTRASASLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+     L  +   P G+LR+ T       ++   L EF   YPDIQI L 
Sbjct: 67  ERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHKKYPDIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID   +  DCAIR    +   SLI R++  +   A A+  +L+    P    +L+
Sbjct: 127 VSDRTIDYLAESVDCAIRAGT-LTDQSLIARRITEMKFVACASRDFLERHPVPQHPSDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           K N    G  +PK  +   +     R   E  +S    +  N   + +     G G+   
Sbjct: 186 K-NCYVVGYFLPKTGQQMPF--HFRRGNEEIEVSGRYTVAANESTTYLAAARAGLGVIQA 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V++   N  +V ++ D       +Y  YP     + +L+ F +++
Sbjct: 243 PLFMVREDLRNGTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWV 291


>gi|323525546|ref|YP_004227699.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382548|gb|ADX54639.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 309

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 17/295 (5%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V   G F  AAE L  S ++++R ++ LE  +G +L  R +R L+LTE 
Sbjct: 2   DRLRAYEVFVTVVSRGGFARAAEMLGTSPANVTRYVNELEAHLGTRLLNRTSRTLSLTEG 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   +  T+  +  +SV+P G+LRI   +  G   L     EF+  YP I
Sbjct: 62  GETLYARCKSILDDVAETEGLVSSASVEPRGRLRINAPVSFGILHLAPLWPEFMRKYPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +DI  +  D AIR+ +   +++   RKL T      A+P YL     P +
Sbjct: 122 ELDVGLIDRVVDIVDEGYDLAIRISR-AGATNHAARKLATSQNILCASPAYLARAGIPAA 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISC-LQVNSYLSIMQYCVLG 238
             +L  H  I +            W   +DR  G+    ++ C +  N+  +     + G
Sbjct: 181 PADLLGHRCIGY----TYAATGDEW-QLIDRG-GKTHAIKVDCHMHTNNGDTARAAALAG 234

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+   P +++ ++     LV ++ D   P   +   YP     + +++   +F+
Sbjct: 235 HGLIWQPTFLIGNDLRAGTLVHVLPDYRLPEIDILALYPSRRHLSARVRVMIDFL 289


>gi|269961786|ref|ZP_06176145.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833497|gb|EEZ87597.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 299

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 18/288 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE+ +L+ S +S++I+ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVEMGSFSKVAEENNLTNSVVSKRIARLEEEIGAQLLYRTTRKLTLTEAGKV 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+   +
Sbjct: 124 MSLDNRFVDLVAGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPIEPID 182

Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  HN + +        +      D +++  V          C   ++  ++ +  + G 
Sbjct: 183 LTTHNCLQYAYQTTGATDWQFKGKDGDYIVRVS--------GCFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           GIA +P  +V  +     LV I  +++     +Y  YP   +   K+K
Sbjct: 235 GIAYVPRCLVYHDIRSGELVDIFPELVGKKLGIYAVYPFTRQPPNKVK 282


>gi|126456629|ref|YP_001075061.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167849015|ref|ZP_02474523.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|126230397|gb|ABN93810.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
          Length = 336

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +   L  R  R L LT  G + 
Sbjct: 6   NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTHLMNRSTRRLALTPAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 66  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHAAPRTPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286


>gi|209549901|ref|YP_002281818.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535657|gb|ACI55592.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 298

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 130/278 (46%), Gaps = 15/278 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  VA   SFT AA +L ++QS++S  +  LE  +G++L  R  R +  TE G
Sbjct: 5   NFNELLLFLAVAEERSFTRAAAKLGVAQSTLSYAVKELEARMGLRLLTRTTRSVATTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    ++E     L     KP+G ++I  +    ++++   L   L  YPDI+
Sbjct: 65  ERLRQSLAPRISEIEADIAALMAYRDKPAGTVKITLSNHAMESVVWPKLAPVLGEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +DN   +I  D  D  +RL + ++   +  R      + A A+P Y +    P + 
Sbjct: 125 LELSVDNSFRNIVEDGFDAGVRLGESLEKDMVAVRIGPDWRLVAVASPDYFETRAVPTTP 184

Query: 184 QELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           QEL  HN I       G L     E  N    V R  G+        N+   ++   + G
Sbjct: 185 QELMHHNCINRRLDRVGGLYAWEFEKNNEEVRV-RVEGQ-----FTFNTDREMVHAALQG 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            GIA +P+  V+    +  L   +ED  TP F  Y+ Y
Sbjct: 239 YGIAFVPESYVETHIADGRLQLFLED-WTPKFAGYYLY 275


>gi|152969739|ref|YP_001334848.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954588|gb|ABR76618.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 301

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 97/191 (50%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L+ F  V  +GSFT AA+ L++  +++S+ I  LE  +G+ L  R  R +T+T +G 
Sbjct: 4   FSALKAFTRVVEAGSFTRAADSLNMPNATLSKTIQQLEAHLGVSLLQRTTRRITVTPEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +   LE        +  KP G LRIA       ++L   L +F+  +PDI+I
Sbjct: 64  EYYEKARCLLEDLEEIDASFNTARNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPDIRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +K  D+     D AIR   P++ S+LI RK+    +   A P YL+    P S  
Sbjct: 124 NLQVADKPADLISGNIDSAIR-GGPMEDSTLIARKIGEATLVTCATPGYLQRYGTPASPD 182

Query: 185 EL-DKHNLITF 194
           EL   H LI++
Sbjct: 183 ELHHGHRLISY 193


>gi|313107450|ref|ZP_07793638.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310880140|gb|EFQ38734.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 301

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 134/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA +G F  AA Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    
Sbjct: 7   LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   LE     L      PSG LR++  + L    L   +  FL  YPD++++L+
Sbjct: 67  QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+  +  D A+R    +  S L+ R L+ +     AAP YL    +PL  + L 
Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F            W    +R  I  P     +V+S L++    + G G++L+P 
Sbjct: 187 EHECIRFS----LSGHADRWTFRKERECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       LV ++         ++  YP + +  GK + F +F+
Sbjct: 243 LYVQAELAEGRLVELLAGWKADETAIHAVYP-SRQLAGKTRVFLDFL 288


>gi|307317996|ref|ZP_07597433.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306896398|gb|EFN27147.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 302

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT A+  L++ +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRAFLRVVETGNFTRASASLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+     L  +   P G+LR+ T       ++   L EF   YPDIQI L 
Sbjct: 67  ERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHKKYPDIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID   +  DCAIR    +   SLI R++  +   A A+  +L+    P    +L+
Sbjct: 127 VSDRTIDYLAENVDCAIRAGT-LTDQSLIARRITEMKFVACASRDFLERHPVPQHPSDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           K N    G  +PK  +   +     R   E  +S    +  N   + +     G G+   
Sbjct: 186 K-NCYVVGYFLPKTGQQMPF--HFRRGNEEIEVSGRYTVAANESTTYLAAARAGLGVIQA 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V++   N  +V ++ D       +Y  YP     + +L+ F +++
Sbjct: 243 PLFMVREDLRNGTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWV 291


>gi|262278639|ref|ZP_06056424.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258990|gb|EEY77723.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 298

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 138/301 (45%), Gaps = 21/301 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++  F  V  SGSFT AAE L LS+S +S  I  LE ++   L  R+ R + LT
Sbjct: 1   MQKNLKQITSFLQVVDSGSFTKAAEILGLSRSMVSIDIKQLEKQLNTSLLIRNTRNIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++  +++      Q      +G LR ++T + GQ  +   L EF  LYP
Sbjct: 61  EIGQHFYEDFKQIQLQIDDAFERSQHLGTSITGTLRFSSTNEFGQRFILPLLPEFCRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q   ++   D+  +  D  IRL   ++SSSL  RK+    ++  A P +++N   P
Sbjct: 121 HLRLQYSFNSSLDDLVTEKLDLVIRLGN-LKSSSLKTRKIGEYPIYIVATPQFIQN--HP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGE----PRI-SCLQVNSYLSIM 232
           +        N+    D+        NW  +   +   +GE    P I S  + NS  +I 
Sbjct: 178 V-------ENISDLADVPWIGHTLLNWQDSQYILQNSLGEQYSLPFIRSQYESNSITAIH 230

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           Q  +   GIA+ P ++V ++     L+R+  D   P   +   YP       K +AF +F
Sbjct: 231 QMALSSLGIAICPAWLVDEDIQQNRLIRLFPDFSLPLQNIQLLYPSTSNLPAKTRAFIDF 290

Query: 290 I 290
           +
Sbjct: 291 L 291


>gi|218675006|ref|ZP_03524675.1| LysR family transcriptional regulator [Rhizobium etli GR56]
          Length = 276

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 126/261 (48%), Gaps = 17/261 (6%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           E+LHL++S++S+ I+ LE  +G++LF R  R  +LT++G   +        ++   + +L
Sbjct: 1   ERLHLTRSAVSKTIARLEQRLGVRLFNRTTRTQSLTDEGRFFYERCLRAIEEIRIGEAQL 60

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +    +  G+LR++  +  G++     L   L  +PD+++     ++ +D+     D A+
Sbjct: 61  ESGRREVRGRLRVSMPVLFGRHCAAPILTRLLDDHPDLELDFSFSDRVVDLLESGFDLAV 120

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R      +  L+ R +    M   A+P YL+    P ++ EL  H  I +  GD      
Sbjct: 121 RNGPLKDNPDLMARAIARQSMTVCASPAYLEKYGVPQTLDELAHHQGIVYRRGD------ 174

Query: 203 EDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNL 255
            D  W+      +G PR     S L+++   SI    V G G+A L  ++V+D   +  L
Sbjct: 175 NDRPWIFPA--AVGPPREVLPKSRLRLDDLASIADAAVEGRGLAWLTCWLVRDRVLSGEL 232

Query: 256 VRIMEDVITPSFTVYFCYPEA 276
           VR++ D+ +  F  Y  +P +
Sbjct: 233 VRVLTDMPSTIFEAYAVWPRS 253


>gi|163758057|ref|ZP_02165145.1| probable transcriptional regulator protein, LysR family [Hoeflea
           phototrophica DFL-43]
 gi|163761122|ref|ZP_02168199.1| probable transcriptional regulator protein, LysR family [Hoeflea
           phototrophica DFL-43]
 gi|162281673|gb|EDQ31967.1| probable transcriptional regulator protein, LysR family [Hoeflea
           phototrophica DFL-43]
 gi|162284346|gb|EDQ34629.1| probable transcriptional regulator protein, LysR family [Hoeflea
           phototrophica DFL-43]
          Length = 298

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 16/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  VA   +F+  AE+L LS +  S+ +  +E  VG +L  R++R ++LTE G++  
Sbjct: 7   LRVFAEVAEHKNFSAVAERLGLSPAMTSKHVKHVEARVGARLLNRNSRNVSLTEAGAQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +L   + +L  +S+ P G LR++  + +        L  +  L P +   + 
Sbjct: 67  QTIRPLLDELAKAEAQLISNSLSPRGTLRMSMPVWMSNPAFAKLLTAYHQLNPHVTFDVD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + I +  +  D A+R+   +    LI RKL  +     AAP +L N   P +  +L+
Sbjct: 127 LSGRKISMVEEGVDLALRVAFKLD-EGLIARKLADVTFQLVAAPAFLDNFGRPKTTGDLN 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIM-QYCVLGSGIAL 243
              ++ +  +       F     VD   RPI         V++  SI+ Q  V G G A+
Sbjct: 186 NAPMLAYDQVAADGRIKFGGEDGVDVKLRPI--------LVSANESILHQAAVAGMGFAM 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP++  +D   +  L  ++  +  P   +   Y +      K+++F +F+
Sbjct: 238 LPNWAAQDDIEDGRLEAVLPMIAWPKLHIQAIYADRSYLPAKVRSFLDFL 287


>gi|90578297|ref|ZP_01234108.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90441383|gb|EAS66563.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 296

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 125/273 (45%), Gaps = 13/273 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +  F  VA S  F+ AA+QL  S S +SRQ+S LE  +G+ L  R  R + LT+ G 
Sbjct: 4   FDGIIEFVAVAESHGFSSAAKQLGCSTSHVSRQVSRLEERLGVALLARSTRQVNLTDAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + + L+     L    +  SG LR++      +  +   L  F   YPD+ I
Sbjct: 64  LYYQQCRGLVNGLQQASESLNTQQITLSGTLRVSAAGAFAEEHVAPALMAFAKSYPDLTI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +++ ++   D  D AIR    ++ S L+ RKLV   M A A+  YL    EP    
Sbjct: 124 EMDFNSRMVNFIEDGIDFAIRY-GALKDSGLVARKLVDRPMAAVASQDYLARYGEPTHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +H+ I           + +W+   +      R+      N+  +++  C  G GIA 
Sbjct: 183 QLKQHSCI--------IANNDHWIFEKEGNTINTRVHGRWTSNNSNAVISACEEGLGIAY 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           +P   +    D+ +LV I++D      + +  Y
Sbjct: 235 MPKSSLAKGLDSGSLVPILQDFWGKGNSSWIVY 267


>gi|254198250|ref|ZP_04904672.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|169654991|gb|EDS87684.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
          Length = 301

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 144/308 (46%), Gaps = 26/308 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVL 237
            +L  H  I  G+  P+    F+          EP  + ++V++        +     + 
Sbjct: 184 ADLCAHRCIVLGEQ-PRVEWRFD----------EPHPAAVEVSAAFLTNDGGAARTLALE 232

Query: 238 GSGIALLPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+GIAL   + V   P+L      R++ +  + +  ++  YP       +++ F +++ +
Sbjct: 233 GAGIALKSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGV 290

Query: 293 K-ARDWKF 299
           +  R W++
Sbjct: 291 ELRRAWRW 298


>gi|254180008|ref|ZP_04886607.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184210548|gb|EDU07591.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 301

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGE-----QPRVEWRFDGPHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDWKF 299
              + V+ +     L R++ +  + +  ++  YP       +++ F +++ ++  R W++
Sbjct: 239 KSIWDVRPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 298


>gi|262278706|ref|ZP_06056491.1| transcriptional regulator LysR family [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259057|gb|EEY77790.1| transcriptional regulator LysR family [Acinetobacter calcoaceticus
           RUH2202]
          Length = 313

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+   
Sbjct: 13  MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ ++  
Sbjct: 73  ERCRQVISIVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKNYPELTVEYT 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+     D ++ L + +  S  + R++ TI     A+P YL+    P S ++L 
Sbjct: 133 TSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKYGVPKSPEDLK 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P    D++ L              L  ++   ++       G+ALLP +
Sbjct: 193 NHACLRLVN--PSITADWHLLNANGESYQIDIGGQLIADNPELLLDVVQQDMGVALLPMF 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              D   N  L  I+ +  +P   VY   P            R+FI  K R W
Sbjct: 251 SALDAVQNGRLCHILPEWRSPDIGVYTLLPS-----------RHFIDAKTRAW 292


>gi|209809599|ref|YP_002265138.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
 gi|208011162|emb|CAQ81589.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
          Length = 297

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 131/264 (49%), Gaps = 22/264 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  + VV   GSFT AA++L ++ S++S+ I+ LE+ + +KLF R  R L +TE G K++
Sbjct: 5   LATYIVVVNEGSFTAAAKKLGVTPSALSKLITRLESALSVKLFERTTRSLLITESGKKIY 64

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  S +  +     I++  S  + PSG L +A        +LQ  +  FL+ YP IQ++L
Sbjct: 65  Q-QSVIMVEAAQQAIDISSSEHIVPSGSLTVAAPKAFLTIVLQALVTPFLIKYPKIQLKL 123

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DI++     D   RL  KP  +  LI +++  +++   A+P Y++    PL  +E
Sbjct: 124 RASDGDINMIAQGIDVVFRLTDKP--TEGLIMKEIGKVNLSLCASPSYIEERGLPLHPKE 181

Query: 186 LDKHNLITFGDLIPKCM-----EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  H+ +  G+           E+ + +A   R           VN     +     G G
Sbjct: 182 LPNHDCLYLGETTDHIWEFVKGEESHVIAVTGR---------YAVNHSQMRLNGVRDGFG 232

Query: 241 IALLPDYIVKD---NPNLVRIMED 261
           I + PD+++K+   N ++V ++ D
Sbjct: 233 IGIFPDFVIKEALANNDVVPVLSD 256


>gi|50119864|ref|YP_049031.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610390|emb|CAG73834.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 310

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 139/288 (48%), Gaps = 10/288 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA  GSFT AAE+++L+ S++S+ I+ LE+ + ++LF R  R L+L++ G   +R 
Sbjct: 12  LFVCVADVGSFTAAAEKMNLTSSAVSKGIARLESRLQVRLFDRTTRRLSLSDSGVAFYRT 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + V   LE  ++ +Q  +  P GK+RI      G+  +   +  F+  +P +   +   
Sbjct: 72  CTSVLADLEEAELAMQSETTDPRGKVRIDLPASFGRLHVLPVILNFIEKHPLLTPHITFS 131

Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D  ++  D  +R+    I S++L  R L        A+P YL    +P + Q+L++
Sbjct: 132 DRFVDPVVEGIDIIVRIGGSNIWSNTLGHRYLGVQQQIFCASPSYLLKNGQPKNRQDLEQ 191

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLP 245
           H  I + +          W  +  +P    R +    + +      +   + G GIA LP
Sbjct: 192 HACIVYAE---NNSMTTPWHFSGGQPHDTERKAFPARIAIGDGEGQVTAVLAGLGIAQLP 248

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +++K   D   LV ++ ++ T    +   + ++ +   ++ AF + +
Sbjct: 249 SWLIKQQLDKGTLVEVLPELTTEGLPINLAWQKSRQTIPRISAFLDIL 296


>gi|330807000|ref|YP_004351462.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375108|gb|AEA66458.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 307

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 134/294 (45%), Gaps = 14/294 (4%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L      AR+   GS+T AA  L +S S+IS+ +  LE    + LF R  R LTLT +
Sbjct: 2   DRLTGLIAFARAASLGSYTAAARDLSVSPSAISKSVQRLEQHFELSLFNRTTRSLTLTAE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +  ++E  +     S  +PSG L++     +G N+L   +  F   YP +
Sbjct: 62  GRDLYERALRILREVEDIEQAAAASRAEPSGILKVTAPPPIGLNILAPAIPRFRERYPKL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L ++  DI     D A+R+   +  S LI R L    + A+A+P YL     PL 
Sbjct: 122 AIDLRLGDQFSDIVEQGIDVAVRVGD-LADSRLISRTLGPHRICAFASPAYLAKRGTPLE 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +L  H+ + F        +   W  +V DR +     + + +++  ++      G GI
Sbjct: 181 LSDLADHDCVNF--RYQSSGQALRWPFSVGDRMVEIAPDAAIVIDASDAVAAVLAAGGGI 238

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFI 290
            + P Y+    P + R     + P F V        +PE+ + +  +KAF  F+
Sbjct: 239 GISPTYVAA--PYVARGELKPLFPQFAVDRFSITALWPESRRGSPNVKAFVGFL 290


>gi|307301452|ref|ZP_07581212.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306903509|gb|EFN34097.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 301

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 8/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R+F  V  SG F  AA+ LH+S  S++R ++ LE  +G +L  R  R L LT  G 
Sbjct: 4   WQAMRIFVQVVESGGFAPAAKVLHMSPPSVTRAVAKLEDLIGTRLLVRTTRSLKLTAAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  ++   +     S   P+G + +      G+  +   + +FL  YP +Q+
Sbjct: 64  GYVADCRRILGEIAEAEANAAGSFTAPAGLVTVTAPALFGRIHVLPVILDFLDHYPAMQV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + I  ++  ++  +  D AIR+   + +S L+ R++ ++      +P Y     EP S Q
Sbjct: 124 KTIFVDRVTNLVDEGLDVAIRI-ASLPASGLVARRIGSVRQVLCGSPDYFARFGEPGSPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H +I    L       F     +  PI  PR+ C   N+  +++   V G G++  
Sbjct: 183 ELARHRIIGREGLFGHSEWLFGRDNNIRVPI-SPRLIC---NTNDAVLAAAVAGWGLSRF 238

Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y V  + +  R   ++ D       ++  + E    + +++AF +F
Sbjct: 239 QSYQVAPDVSAGRLKVVLADYEREPVPIHIVHAEGRMVSARVRAFVDF 286


>gi|299770569|ref|YP_003732595.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
 gi|298700657|gb|ADI91222.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
          Length = 311

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G +
Sbjct: 11  NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I IQ
Sbjct: 71  VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    +
Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGTPNHPHD 189

Query: 186 LDKHNLITFGD 196
           L +H  I  G+
Sbjct: 190 LKQHECIYLGE 200


>gi|285019715|ref|YP_003377426.1| transcriptional regulator, lysr family transcription regulator
           protein [Xanthomonas albilineans GPE PC73]
 gi|283474933|emb|CBA17432.1| putative transcriptional regulator, lysr family transcription
           regulator protein [Xanthomonas albilineans]
          Length = 302

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 14/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  V     F  AA+ L +S +S++RQ++ LE  +G +L  R  R ++ +  G+ 
Sbjct: 5   EAMRVFVAVVDRNGFNAAADALGISTASVTRQVAWLEQRLGSRLLNRTTRRVSPSSVGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  + +  +  + E ++ PSG LRI          L   L  +   YP + + 
Sbjct: 65  YYQRCQLLLAEFDDMEAAVGEQALTPSGTLRINAPFSFSIARLGPRLAGYSARYPQVALD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +DI  +  D AIR+ + + + +LI RKL    ++  AAP YL     P    E
Sbjct: 125 LSLSDRVVDIVEEGFDLAIRITRHV-APTLIARKLGEAQVYLCAAPSYLARAGTPRMPTE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           +  H  + +  +    +        +  P G+ ++     L  N+   + +  + G GI 
Sbjct: 184 IADHAFLNYSYMPLDTL-------ILHGPDGDTQVRVHGSLCANNGDVLREAAIAGMGIV 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L PD++ +   ++  LVR++ D       VY  Y        K+++F +++
Sbjct: 237 LQPDFMAEAALEDGRLVRVLPDHQLGPIGVYAVYANRSHLAPKVRSFIDYL 287


>gi|229591140|ref|YP_002873259.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
 gi|229363006|emb|CAY49961.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
          Length = 293

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 141/290 (48%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT AAEQL LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRLFCQVMESGSFTAAAEQLGLSKQFVSRRLIQLEDRLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G +R++  +      L   L  FL  +P + +
Sbjct: 64  SYYESALRLLSEVEQVEQGIAGQNSEPRGTIRLSAPLSFAMAHLGCLLPLFLQRHPQVSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ S+LI R++ +I     A+P YL     P    
Sbjct: 124 EVDLSDRPVDLIGEGYDLVLRI-GTLEDSTLIARRIASIPRVYCASPDYLALRGTPQKPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +H+ + +G           W       +    +S  ++VN+   +    + G G+  
Sbjct: 183 DLAEHDCLPYGH-----GRQVQW--RFKGKVQALNVSGRMRVNNGDLLRDTAIAGLGVTY 235

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +IV +   +  LV ++++    + T+   YP+  +++  ++A   F+
Sbjct: 236 LPTFIVGEAVKDGRLVTVLDEFAPEALTLSAVYPQHRQSSRPVQALVEFL 285


>gi|53725430|ref|YP_102663.1| transcriptional regulator [Burkholderia mallei ATCC 23344]
 gi|67642686|ref|ZP_00441439.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|76811674|ref|YP_333256.1| transcriptional regulator [Burkholderia pseudomallei 1710b]
 gi|121599164|ref|YP_992800.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124384622|ref|YP_001026411.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126449851|ref|YP_001080316.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126453910|ref|YP_001065972.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134282397|ref|ZP_01769102.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167002929|ref|ZP_02268719.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167719886|ref|ZP_02403122.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167738887|ref|ZP_02411661.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167824482|ref|ZP_02455953.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167846019|ref|ZP_02471527.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167894592|ref|ZP_02481994.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167919255|ref|ZP_02506346.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|226192921|ref|ZP_03788533.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811984|ref|YP_002896435.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242315641|ref|ZP_04814657.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254177469|ref|ZP_04884124.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254180031|ref|ZP_04886630.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254199600|ref|ZP_04905966.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254205918|ref|ZP_04912270.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254261169|ref|ZP_04952223.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254358681|ref|ZP_04974954.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52428853|gb|AAU49446.1| transcriptional regulator [Burkholderia mallei ATCC 23344]
 gi|76581127|gb|ABA50602.1| transcriptional regulator [Burkholderia pseudomallei 1710b]
 gi|121227974|gb|ABM50492.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124292642|gb|ABN01911.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126227552|gb|ABN91092.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126242721|gb|ABO05814.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134246435|gb|EBA46524.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147749196|gb|EDK56270.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147753361|gb|EDK60426.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148027808|gb|EDK85829.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160698508|gb|EDP88478.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|184210571|gb|EDU07614.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|225935011|gb|EEH30986.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237503348|gb|ACQ95666.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238523874|gb|EEP87310.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242138880|gb|EES25282.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243061476|gb|EES43662.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254219858|gb|EET09242.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 313

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP++Q+ L
Sbjct: 66  LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPEVQVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++    P   Q+L
Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEQHGAPQRPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             H  +  G + P    D  W   +  P GE  ++      +VN   ++      G GI 
Sbjct: 186 AGH--VCLGMVAPGLYWD-EW--KLVGPQGEQSVTLAPPPFRVNVAEALAAGIREGMGIG 240

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y       N + VR+M +  +    +Y  Y           A R ++  K R W
Sbjct: 241 VLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287


>gi|262173316|ref|ZP_06040993.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
 gi|261890674|gb|EEY36661.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
          Length = 299

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIVRNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L KHN + +        + +F     N++  V              ++  ++ +  + G 
Sbjct: 183 LVKHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA +P  +V     N  LV +  + +     +Y  YP
Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272


>gi|119896404|ref|YP_931617.1| putative transcriptional regulator [Azoarcus sp. BH72]
 gi|119668817|emb|CAL92730.1| putative transcriptional regulator [Azoarcus sp. BH72]
          Length = 298

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 123/279 (44%), Gaps = 15/279 (5%)

Query: 6   DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+   +   +A SGS T AA+ L +S   + R ++ LE  +G++LF R  R L+LT++
Sbjct: 2   DKLKAMQIAVAIADSGSLTAAADSLDISLPVVVRTLAALEAGLGVRLFNRSTRRLSLTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        ++   +   +  L   +V PSG++ +   +  GQ  +   L  F+  Y  +
Sbjct: 62  GRDYLARCRQILADIHDAEAALASDAVVPSGRVVVTAPVMFGQQHVAPALTRFVQHYGQM 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L ++ +++  ++ D A+R+   I+  SL+   L T+     AAP YL     P  
Sbjct: 122 RVELRLHDRVVNLLEEHIDVAVRI-GAIEDQSLVAHALGTLRRIVVAAPAYLAARGTPQH 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +EL  H  I F            W   +D     G      L  N     +  C  G G
Sbjct: 181 PRELAAHECIVFNG------NSAGWWRFIDDGHEFGMTVDGRLTYNHVAPALDACRAGMG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
           +     Y + D+     L+ ++E    P   V+  +P A
Sbjct: 235 LGTFIAYQIADDLHAGRLLPVLEAFELPPRPVHVAFPHA 273


>gi|170731633|ref|YP_001763580.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169814875|gb|ACA89458.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 325

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 125/249 (50%), Gaps = 8/249 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  + + L +F     +GS + AA +L L +S++S++++ LE  +G +L +R +R   LT
Sbjct: 21  LEMNLNDLYLFVQAVEAGSMSAAARRLGLPKSTVSKRVAELERTLGARLVHRTSRSFRLT 80

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G++          + ++ +  +   + +P+G +RI +++ + Q++L   L    + +P
Sbjct: 81  PVGAEFFEHARAAVIEADSARDAVLRQAAEPAGVVRITSSVPVAQHILAPCLPALAITHP 140

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + +Q+   ++ +DI+ +  D A+R    P+  S+L+QR L    +   AAP YL     
Sbjct: 141 KLLLQIHASDRLVDIAQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPAYLARAGT 200

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H+ +  G   P+          VD     PR+  LQ +    ++Q    G 
Sbjct: 201 PDTPADLAQHDGLHPG---PQPWRLQRGGDAVDV---TPRLR-LQADESTLLLQAATAGL 253

Query: 240 GIALLPDYI 248
           G+A LPD+I
Sbjct: 254 GLACLPDWI 262


>gi|107022912|ref|YP_621239.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686845|ref|YP_840092.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893101|gb|ABF76266.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652560|gb|ABK13199.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 297

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 125/273 (45%), Gaps = 5/273 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L VF  VAR  SFT AA +L +SQS++S+ +  LE  +G++L  R  R ++ TE G
Sbjct: 5   NFNDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLEARLGVRLLARTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +    ++      L +   KP+G +RI  T      ++   L+  L  YPDI+
Sbjct: 65  EALFNAVAPRIDEISAQLAALSDFRDKPAGVVRITATEHPIDTVIWPKLRAVLPDYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D    +I  +  D  +R    +    +  R    I M   AAP YL   + P   
Sbjct: 125 VELSVDYGLSNIVEERYDIGVRYGDQVAQDMIAVRISPDIRMAMVAAPSYLDGRKPPKKP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ +T      K +  + W     +   + R++  +  N+   ++Q  + G GIA
Sbjct: 185 QDLLDHDCVTLRLATAKGI--YAWELKKGKNAIQARVNGRITCNTQPHLLQAALDGFGIA 242

Query: 243 LLPDYIVKDN--PNLVRIMEDVITPSFTVYFCY 273
            + + I   +     +RI+     P F  Y  Y
Sbjct: 243 FVTEDIAHAHLRSGALRIVMPDWCPVFPGYHAY 275


>gi|323499599|ref|ZP_08104568.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315339|gb|EGA68381.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 294

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 130/269 (48%), Gaps = 3/269 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V + GSF+ A+  L +S +++S+ IS LE  +  +LF+R    LTLTE+G  L
Sbjct: 5   QLPIFIDVVKRGSFSAASRNLGVSPAAVSKSISQLEKHLKQRLFHRSTHSLTLTEEGRLL 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              T ++   L+       ++S +  GK+++   I  GQ L+   L EFL LYPDI++ L
Sbjct: 65  FERTVDLVEALDENVSLSIDASSEMKGKIKVNLPIHFGQTLVYPKLLEFLDLYPDIELDL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             D++ ID+  +  D  I  R   + S LI R+   + +    +  Y      P + Q+L
Sbjct: 125 HFDDRAIDLVENGFDLGIGNRIN-EDSRLIARQYYELQLTYVCSRSYADEHGIPETPQQL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI-ALLP 245
             H  IT+       +  +N++    +P+     + L VN+  S       G GI A+  
Sbjct: 184 IDHECITYRSPTTGRINPWNFVDQ-GKPLQITPEARLVVNNPNSAYLAAKAGFGITAISQ 242

Query: 246 DYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
            Y  K   +LV I+ +    S  V+  YP
Sbjct: 243 SYFEKGEIDLVSILNEFQPNSSPVWLYYP 271


>gi|293607510|ref|ZP_06689845.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292814081|gb|EFF73227.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 301

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSFT AA+ L +  +++S+ +  LE  +G++L  R  R +T+T +G   +
Sbjct: 7   IRGFARVVEAGSFTRAADSLDMPNATLSKMVQDLEAHLGVRLLQRTTRRVTVTPEGRAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE           KP G LRI       +++L   + +FL  YPDI+I   
Sbjct: 67  EKALRIVRDLEDIDGSFNAIQGKPKGYLRIDVGGSTARDVLIPAISDFLARYPDIRIDFG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           + ++ +D+  D  DC IR    +  SSL+ R + +  +   A P YLK    P+  +EL 
Sbjct: 127 VSDRPVDLISDNVDCVIR-GGTLGDSSLVARHVGSADLITCATPAYLKQHGTPIYPEELK 185

Query: 187 DKHNLITF 194
           + H L+ +
Sbjct: 186 NGHKLVNY 193


>gi|288961835|ref|YP_003452145.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914115|dbj|BAI75601.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 318

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 101/194 (52%), Gaps = 1/194 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D+LR F  +  +GS + A  +++L+ S +S++++ LE     +L  R  R L LT
Sbjct: 1   MLDDIDELRTFVRIVAAGSLSAAGREMNLALSVVSKRLASLERRTDTRLVARSTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +LH     +  ++   +  L    V+P G LR+     LG+  +    +  +  YP
Sbjct: 61  EEGRRLHAHAQRILAEIAEAEEALSHGRVEPRGVLRVGAPAALGRIHVGPVCRALVEAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + L L ++ +D+  +  D  +R+  P + S+L+ R+L   H     AP YL+    P
Sbjct: 121 GISVDLCLTDRMVDLIDEGMDVVVRIGVP-RDSTLVMRRLADNHRVVVGAPAYLERRGHP 179

Query: 181 LSIQELDKHNLITF 194
           ++ ++L++H+ I +
Sbjct: 180 VAPRDLERHDCIQY 193


>gi|149909798|ref|ZP_01898449.1| probable transcriptional regulator transcription regulator protein
           [Moritella sp. PE36]
 gi|149807130|gb|EDM67086.1| probable transcriptional regulator transcription regulator protein
           [Moritella sp. PE36]
          Length = 300

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 135/289 (46%), Gaps = 17/289 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+ L+ F  +AR G+ + A   L++  ++++R+I  LE  +G +LF +   G  +T+ 
Sbjct: 1   MNWNDLKYFLALAREGTISGAGRVLNVKHTTVARRIEALELSLGTRLFDKSRTGYAMTQA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              L++    +  K+ T   +        +G L++    +L   L+   + EF   +PDI
Sbjct: 61  AEDLYQQVVSMEEKVRTIDRQAANQDSALAGPLKLTIAFELANRLIIPKMGEFCQRFPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL++    +D++   AD AIR+  P     L+  +++ +H   YA+P +L++      
Sbjct: 121 DMQLLMTKNLVDLAAMEADLAIRM-TPNPPDYLVGAEIMKLHHGIYASPAHLQS------ 173

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              + K  +I F     +     +W   V +   +  +S L+V+   S+      G G+A
Sbjct: 174 --RVTKTKVILFQSENKRP----DW---VRKQASDAEVS-LRVDDVGSMAVAAAHGFGLA 223

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LP +I    P LVR+   +    + ++      L+ T +++A +  + 
Sbjct: 224 KLPCFIGDTQPGLVRLDVQMPPSDWGIWILNHVELRTTARVRACKEHLI 272


>gi|262089730|gb|ACY24824.1| LysR family transcriptional regulator [uncultured organism]
          Length = 290

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 135/295 (45%), Gaps = 26/295 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA +GSF+  A+Q+ +S++ ++R IS LE  +  +L  R  R +TLT+ G +  
Sbjct: 1   MRVFSQVAANGSFSATADQMEMSRAMVTRCISELEEWLNARLLQRTTRKVTLTDAGEQFL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++    +    E    + + SG+LR+  +   G + +   + +FL L+P ++I + 
Sbjct: 61  RRCQQILTLTDEVIEETANLNSELSGQLRLTCSASFGYSQMASAIADFLALHPKLKIDMN 120

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +  I++     D AIR+     P+    LI R+L +      A+P YL+    P S +
Sbjct: 121 VSDVSINLVDARVDLAIRISSNPDPM----LIARRLGSCASILAASPKYLEQFGTPESPE 176

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238
            L  H  +T   +  K +  F       +         +++NS+ S      ++   + G
Sbjct: 177 SLVHHRCMTH-TIAGKYLWQFTRATETTK---------IEINSHFSTNDASILLHAAIAG 226

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI + P Y+  D      LV ++ D   P   +   YP        L+A  +F+
Sbjct: 227 GGITMQPTYLANDYIRAGKLVALLPDWSVPEMAINALYPSRRHMPAALRALLDFL 281


>gi|209884860|ref|YP_002288717.1| putative HTH-type transcriptional regulator YcjZ [Oligotropha
           carboxidovorans OM5]
 gi|209873056|gb|ACI92852.1| putative HTH-type transcriptional regulator YcjZ [Oligotropha
           carboxidovorans OM5]
          Length = 297

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 120/272 (44%), Gaps = 11/272 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  T+ G +L 
Sbjct: 9   LAAFVVVAEERSFTKAAARLGMAQSALSQIVRRIEERLGLRLLSRTTRSVAPTDAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H+L++    L E   +PSG +RI T     + +L   +K  L   PD+ +++ 
Sbjct: 69  ATLGPMLHELDSAIASLSELRDRPSGTIRITTVEHAAKTILVPAMKRLLTGNPDVTVEMT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  D  D  +RL   +    +  R    I M    AP Y +    P S  +L 
Sbjct: 129 IDYGLADVVADRFDAGVRLGGEMAKDMIAMRIGPDIPMAIVGAPDYFRTHPVPASPAQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            H  I     +P      +W L    R +       L +N+   I+   + G G+A LP 
Sbjct: 189 DHRAINL--RLPTSGTLNSWRLKRGGRDVRVRVEGPLILNTIDLILDAALDGHGLAYLPL 246

Query: 246 ----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
                Y+  D   LVR++    TP    Y  Y
Sbjct: 247 DQAQSYL--DKGRLVRVLSK-FTPDLPGYHLY 275


>gi|167576742|ref|ZP_02369616.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 317

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 114/253 (45%), Gaps = 16/253 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA  LHL+QS+IS+QI  LE  +G  LF RHARGL LT +GS L+
Sbjct: 13  LRCFEAAGRLGSFTKAAGALHLTQSAISQQIRQLEARLGYPLFVRHARGLELTPKGSVLY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+  +  L  T  +L      P   L+++         L   L EF  L+P   ++L 
Sbjct: 73  EATATAFGSLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLSEFHRLHPQTPVRLR 128

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ID   +  D  D AIR   P    +L    L   ++ A AAP YL       + +
Sbjct: 129 AEFHAIDRETMRADDIDVAIRW-DPFDYRALHVEPLFDEYLVAAAAPAYLGRHPPRATAK 187

Query: 185 ELDK----HNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +      H+   + D  P+ +E   WL A V    GE R     + S    +   V G 
Sbjct: 188 WISSVVPLHDASAWPD-APRYVEWRTWLDAVVPGYAGELRGPEFNLASL--AIGAAVAGQ 244

Query: 240 GIALLPDYIVKDN 252
           G+ +  + +V D 
Sbjct: 245 GVVVCREALVNDE 257


>gi|330982423|gb|EGH80526.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 300

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 131/283 (46%), Gaps = 11/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  +ISR+++ LE ++G++L +R  R ++LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSVSLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H  ET +  L+  +   SG LR+      GQ ++   L   +   P + I L 
Sbjct: 66  PHAKTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQENPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL    +P  + EL 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLARHGQPSILDELR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  IT        M  + ++     P+          NS  ++   C  G G+A+L  +
Sbjct: 185 QHPCITL-----HAMPYWPFIRE-GEPVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYW 238

Query: 248 IVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286
            V+      +L++I  EDVI    +V    P   +   +++ F
Sbjct: 239 DVQQEIREGSLLQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLF 281


>gi|311105758|ref|YP_003978611.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760447|gb|ADP15896.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           75 [Achromobacter xylosoxidans A8]
          Length = 325

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 131/277 (47%), Gaps = 21/277 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA + SFT AA +L LS+S+I + I+ LE  +G +L +R  R ++L+++GS  +
Sbjct: 25  LLAFVRVADTQSFTAAAAKLGLSRSAIGKCIARLELGLGARLLHRSTRSVSLSDEGSVFY 84

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++     +      P G+LRI   + LG+  +   L+++L  +P+++  + 
Sbjct: 85  EHAQRILSEVDNATDAMASRKQAPRGRLRIDLPVSLGRLHIMPLLRDYLRDWPEVEADVS 144

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  ID+  D  D AIR+      S L++R L    + A AAP YL     P +  +L 
Sbjct: 145 FSDDYIDLVRDGVDVAIRIGGETD-SRLVRRVLAPHRLIACAAPGYLDRHGAPATPDDLA 203

Query: 188 KHNLITF---GDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
            H  + +   G L+P       W   V+   G+ R       +++ +  ++    + G G
Sbjct: 204 SHQTLAYTHAGALVP-------WRFAVN---GQERAVHVAGRMRLGNTEALRDAALAGEG 253

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           IA L  ++V ++     L  ++E V      V   YP
Sbjct: 254 IAQLGAFLVGEDLRAGRLTPVLESVAPAGAPVCAVYP 290


>gi|121597572|ref|YP_991315.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124382277|ref|YP_001025725.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126446665|ref|YP_001077805.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|167828911|ref|ZP_02460382.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|226200055|ref|ZP_03795604.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|251766876|ref|ZP_02265237.2| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254176369|ref|ZP_04883027.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254201104|ref|ZP_04907469.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254205074|ref|ZP_04911427.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254301349|ref|ZP_04968793.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|121225370|gb|ABM48901.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|126239519|gb|ABO02631.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|147748716|gb|EDK55791.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754660|gb|EDK61724.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|157811418|gb|EDO88588.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|160697411|gb|EDP87381.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|225927907|gb|EEH23945.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|243064469|gb|EES46655.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|261826727|gb|ABN00248.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 312

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 11  DRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++++
Sbjct: 71  FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178
           L       D+  D  D AIRL +  Q   L  R +   T  +   A+P     H +    
Sbjct: 131 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 190

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++  L +        +    + D +    V RP  +P +     +   +  Q    G
Sbjct: 191 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 247

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290
            G+ALLP+++V+D+     +++ +    F    VY  YP A     K++A+ +FI
Sbjct: 248 GGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 302


>gi|187918801|ref|YP_001887832.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717239|gb|ACD18462.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 312

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 134/282 (47%), Gaps = 11/282 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   D +  F  V  +GSF  AAE+++L++S++ + I  LE  +G++L  R  R  +LT
Sbjct: 1   MSDILDGVTTFVRVVETGSFALAAERMNLTRSAVGKVIVRLEKRLGVRLLNRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +        +LE  + +L     +P G+LR++     G   +   L      +P
Sbjct: 61  EDGQAYYDRCVRALAELEAAEADLDSGRREPQGRLRVSVPQAFGHYCVAPVLLGLARKHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D  +R+     S SL  RKL   H    AAP YL     P
Sbjct: 121 QLKIDISITDRFVDVIEEGFDLVVRVGPLADSVSLAARKLGMQHASIGAAPAYLARHGTP 180

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +++EL  H +I +   G   P  + D +    + R   +P+   L  +    I+   + 
Sbjct: 181 RNVEELRGHAVIGYLRAGSAQPWDVVDVD--GQIRRAQVQPQ---LGFDDMKGIVDAALA 235

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEA 276
           G G+A LP +++   +    LV +ME+   P+  ++  +P++
Sbjct: 236 GFGLAWLPSWLLTRYEKTGELVTVMENCFRPAQEIHLVWPKS 277


>gi|115358785|ref|YP_775923.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284073|gb|ABI89589.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 303

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 134/290 (46%), Gaps = 11/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT +G+  +
Sbjct: 7   MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLRVRLLQRTTRRVALTAEGATYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+  +    ++   P G +R+        N +   L++F   YPD+++ L 
Sbjct: 67  ERCTRLLADLDDAETLFDDAGAAPRGAIRVDLPERFALNKVIPALQDFHARYPDLRVVLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P S  +L 
Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRIGELSQINCASPAYLARHGTPRSPDDLP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  +  G    +   + +W    D   G  +     S + VNS  + +  C+ G G+  
Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDTGALQTVKMRSVVAVNSSQAYLACCLAGLGLIQ 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P   +    ++ +LV ++ +       V   +P +     +++ F +++
Sbjct: 243 APREGLAPLLEDGSLVEVLPEWHAEPLPVSVVFPNSRHLAPRVRIFVDWL 292


>gi|120611211|ref|YP_970889.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120589675|gb|ABM33115.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 311

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR++S LE ++G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVVERGGFAAAGRALGIPKSRLSRRVSELEAQLGVRLLQRTTRKLSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    V    +     + E   +P G +R++  + L Q +L   +  FL  +P ++
Sbjct: 63  ESYLRHCQAVREAAQAASDAVAEVQTEPRGTVRVSCPVTLAQTVLGELMPIFLERHPQVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +D+  +  D A+R+R  +  S S++ ++L  +     A+P  L     P +
Sbjct: 123 VEMQVTNRAVDLVEEGVDVALRVRPNLDDSGSMVVKRLDDVLQVLVASPALLARQGTPAT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL + + +      P        +    R            +  L++    + G+G+ 
Sbjct: 183 LAELSRLDSMAMS--APDGRTALRLVGPDGREEAVQLTPRYVADDLLTLKFAALAGTGMC 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY+ +       LVRI+    TP   V+  +P      G   A R F+
Sbjct: 241 WLPDYMCQAELGEGRLVRILPGWSTPRGVVHAVFP---SRRGLAPAVRRFL 288


>gi|91782250|ref|YP_557456.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686204|gb|ABE29404.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 312

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 12/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT AA  L ++   +SR I+ LE+ +  +L  R  R ++LTE G +
Sbjct: 5   ENMRMFVRVVEAGSFTKAASLLSVATPQVSRAITELESRLRTRLLNRTTRHMSLTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   ++   +   + E   ++ +PSGKLRI  T   GQ+ L   +  +   +PD+ I 
Sbjct: 65  YLQRCEQILEYVGLAEAEAAGAAAQPSGKLRIHGTTSFGQHYLAPLIARYNQRFPDVLID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L  +  D+  +  D ++ + + +  S+L+ +++ T      A+P YL     P+S+++
Sbjct: 125 LVLAQRVPDMIEEGFDVSVVVARELADSALVSQRIGTTCTVLCASPQYLSKRGMPVSLED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241
           L+ H  +    L+   +    W+   D P  +     R + L VN   ++ +    G GI
Sbjct: 185 LNTHTCL---QLVLPDVPSGQWI--FDGPDAQVFRHTRSTPLTVNVAEALAEAIREGMGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP  +      + +LVR+++     S  +Y  Y        K++ F  F+
Sbjct: 240 GPLPLSLALQGFRDGSLVRVLDGHRLQSNNIYALYASRQYLDAKIRTFVEFL 291


>gi|154244965|ref|YP_001415923.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159050|gb|ABS66266.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 311

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 139/296 (46%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +RVF  +    SFT AA  L L +SS++  + GLE  +G++L  R  R ++ T  G 
Sbjct: 15  FDAMRVFTRIVERRSFTQAAGDLGLPRSSVTDAVKGLEARLGVRLLQRTTRHVSPTLDGE 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   LE  +        KPSG +R+       ++ L   L  FL  YP I++
Sbjct: 75  AYYQRCVSLLADLEDAEGAF--VGAKPSGLIRMDVHGTQARHFLLPGLPRFLATYPGIRL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R  + + +S LI+R+L T+    +A+P YL+    P + +
Sbjct: 133 HMSETHQQLDLIREGFDCILRAGE-LANSPLIRRRLATLERGTFASPGYLRRFGTPRTPE 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL+ H ++  G L     +    L TV   + +  + + L V    + +    LG G+  
Sbjct: 192 ELEGHEMV--GLLATDTAKISPLLFTVAGKVRQLTLPASLTVTGPETNVAAACLGIGLIQ 249

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +P Y V        LV ++ D    +  V+  Y    + + +L+   +++  + R+
Sbjct: 250 VPRYRVAAELAGGALVEVLADFPPAALPVHVLYSHTRQLSPRLRVLIDWMAAQFRE 305


>gi|326629917|gb|EGE36260.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 300

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 8/247 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 8   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 68  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
            H ++ +  L P          T   P G   +     L VNS  +    C+ G GI   
Sbjct: 187 SHAVVHY-SLTPGVSSPGFAFET---PYGMQWVKTGGMLTVNSTETWHTACLAGLGIIQT 242

Query: 245 PDYIVKD 251
           P   V++
Sbjct: 243 PRIAVRE 249


>gi|320641650|gb|EFX11038.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. G5101]
          Length = 314

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 140/291 (48%), Gaps = 13/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 15  NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 75  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 135 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L     +    +I +C   F      ++  G   I     L  N    + Q+C+ G GIA
Sbjct: 194 LSALPCL----VIKECDHPFGVWQLRNKE-GHHAIKVTGPLSSNHGEIVHQWCLDGQGIA 248

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 249 LRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298


>gi|91790390|ref|YP_551342.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699615|gb|ABE46444.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 302

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 138/288 (47%), Gaps = 10/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  V   GSF+ AA  + + Q S ++ ++ LE ++G +L +R   G+T TE G+  +
Sbjct: 7   IQLFIRVVDLGSFSKAAADVGIGQPSATKLVAQLEKQLGSRLLHRSTHGVTPTEIGALYY 66

Query: 68  RVTSEVYHKLETTQI--ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + H +E  +    L +S V+  G LRI+T++  G+ +L   +  F+ L+P +QI+
Sbjct: 67  EKCKLIAHHIEEAETVAALLQSQVQ--GGLRISTSVAFGRRVLVPLVMRFMKLHPQLQIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ +D+     D AIR+  P+  S+L  R L        A+P YL+   EP    +
Sbjct: 125 LNFEDRYVDLVEQGIDVAIRM-GPLADSTLGARYLGVNPWVLVASPEYLERRGEPSVPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + +  +       F     +  P+  P    L+ N+  +++     G G+A LP
Sbjct: 184 LAAHEALIYSTVQGDARWHFTGTDGLTLPV--PVKGPLRSNNLSALLAAARGGMGVAALP 241

Query: 246 DYIVKDN--PNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y+   +    ++R ++ D   P   ++  YP       K+  F  ++
Sbjct: 242 RYVAHKSIRSGVLRPLLTDWTLPQQEIHAVYPSPQLVPTKVSGFVAWL 289


>gi|71908713|ref|YP_286300.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB]
 gi|71848334|gb|AAZ47830.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 300

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 128/278 (46%), Gaps = 20/278 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F   A  GS + AA    ++ + I R++  LET +G+KL  R  R LT+T +G   
Sbjct: 6   QIEAFVSAATRGSLSAAARVEGVTPAIIGRRLDALETRLGVKLLLRTTRKLTITFEGQAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +  + L   +  +   SV+ SG+LR++     G+  +   + +F+L  P++++ L
Sbjct: 66  LEDCQKTLNDLANAEAAVSLGSVRASGQLRVSAPSGFGRQHVAPLVGDFMLANPEVRVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+R+ + +  SSL+  +L  +     A+P YL     P    +L
Sbjct: 126 NLSDRLVDLVNENIDCAVRIGE-LTDSSLVSVRLGEMRRMVVASPAYLVTHGVPREPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSG 240
             HN ++ G       +   WL   D   GE  +  L+VN          + ++ + G G
Sbjct: 185 SGHNCLSLG-------QQRGWLFR-DPASGE--VDALKVNGSFECNDGAVLHEWALAGRG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           +A    + V  +     L  +++    P   +Y  +P+
Sbjct: 235 LAWRSLWEVGQDLKEGRLTSVLDAWQAPPMGIYAVFPQ 272


>gi|27378552|ref|NP_770081.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27351700|dbj|BAC48706.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 305

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 126/269 (46%), Gaps = 20/269 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F    R GSF+ A  ++ LS +S+SR I  LE ++G++L  R  R L LT+ G    
Sbjct: 7   MELFVSAVREGSFSAAGRRVGLSPASVSRYIGELEAQLGVQLLNRSTRHLGLTDAGKIFF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T +V H +E  +         P G LR+ +    G  +L   +  F  LYP+++++L 
Sbjct: 67  QRTEQVLHGIEDAEAAALSLQTAPRGTLRVHSRTLFGIRVLSPLIPGFQKLYPELKVELR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY---LKNCREPLSIQ 184
           L  +   +  D  D   ++ +  +   L+ R+L+       A+P Y   +   REP   +
Sbjct: 127 LSERRPQLREDEFDVDFQI-QAAKDPGLMLRRLLRSERILVASPDYVGRMPKLREP---E 182

Query: 185 ELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ +HN +T+     D++ K M   N L  +  P      S    N+ + +    V G G
Sbjct: 183 DITRHNCLTYWMGPDDVVWKFMRR-NRLREIVVP------SSFGSNNGVVLCDLAVAGHG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV 269
           IALL DY V +     R++   + P F V
Sbjct: 236 IALLDDYTVAEQLKSGRLVR--LLPGFRV 262


>gi|86147816|ref|ZP_01066123.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85834454|gb|EAQ52605.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 294

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 17/268 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA    F+ AA+QL  S S +SRQ+S LE  VG+ L  R  R ++LTE G   ++  
Sbjct: 10  FVAVAECHGFSAAAKQLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTESGHTYYQQC 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            ++   L+    ++     + SG LR++      +N     L EF   +PD+ I++  + 
Sbjct: 70  KDLVIGLQQANEQVTSQQAQLSGTLRVSAAGAFAENHAAAALMEFAKDHPDLTIEMNFNT 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             ++   D  D AIR  + +  S L+ RKLV   M A A+ +Y+     P   ++L  H+
Sbjct: 130 NMVNFIEDGIDFAIRYGR-LDDSGLVARKLVDRPMAAAASQNYIDQFGSPTQPEQLKWHS 188

Query: 191 LITFGDLIPKCMEDFNWLATVD-RPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
            I              WL   D +P+   R+    + N+  ++++ C  G GI  LP   
Sbjct: 189 CII--------ANSDQWLFEKDGKPLNAVRVHGRWKSNNSSAVLKACEGGLGIVYLPKSS 240

Query: 249 VKD---NPNLVRIMED---VITPSFTVY 270
            K    N  LV ++E+     T S+ VY
Sbjct: 241 FKGGLANGKLVPVLEEYWGAGTSSWIVY 268


>gi|134293420|ref|YP_001117156.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136577|gb|ABO57691.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 319

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  G+ + A  +L  S ++ S +++ LE  +  +LF R+ R L LTE+G   H
Sbjct: 9   MRLFVEAAALGNLSAAGRKLGFSPAAASARLAKLEAALSTRLFDRNTRQLRLTEEGRLYH 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S     +E  +  L  S     GK+RI+ + D G++LL   L+ F+   P+++I L 
Sbjct: 69  HHCSIALRAIEDGEAALTASRGIARGKVRISASADFGRHLLNSWLEAFVRTQPELKIALD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+  D  D AIR  +P  + SLI R+L        A+P YL  C  PL   +L 
Sbjct: 129 LTDSVSDLLQDEVDLAIRFGRP-NNPSLIARRLAPNWRVLCASPDYLAKCGTPLVPADLV 187

Query: 188 KHNLITF 194
            H  +  
Sbjct: 188 AHEFVVL 194


>gi|317402965|gb|EFV83505.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 299

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 119/243 (48%), Gaps = 11/243 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GS + AA  L +S++ +SR ++ +E  VG++L +R  R L+LT  G++  
Sbjct: 7   MQVFVEVADRGSLSAAAVHLDMSRAMVSRYLAEMEQWVGVRLLHRTTRRLSLTPAGAETL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +   +  +      P G LR+ T++  G   L   + +++ L+P   + L+
Sbjct: 67  PRCRQMLDMVGDLRSAVSTPEDTPRGLLRMTTSMSFGSRHLARVVTDYVKLHPGTSVDLM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +++  +  D A+R+   +   +LI RKL        A+P YL+   EP  +++L 
Sbjct: 127 LVERAVNLVEERVDLAVRITNDLD-PNLIARKLAVCRSVVCASPEYLQREGEPARVEDLS 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             N +T   FG  + +   D         P+  P    +  N    ++Q  + G+GIA+L
Sbjct: 186 LRNCLTHSYFGKSLWRFERD-------GVPVDVPVSGNISANEVSVLLQAALEGAGIAML 238

Query: 245 PDY 247
           P Y
Sbjct: 239 PTY 241


>gi|218700582|ref|YP_002408211.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|218370568|emb|CAR18375.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
          Length = 302

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 138/302 (45%), Gaps = 26/302 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L L+ S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLTSSAISHNIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +         A P Y 
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQ 233
               +P    +L  H  + F    P   + F+W    +  I     I    V++ L  + 
Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELKIAVAGNIILDDVDAELDAV- 230

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
             ++G+GI  L    +K   D   L  ++ED IT  P F +Y  YP     +  L+AF +
Sbjct: 231 --LMGAGIGYLLYEQIKEYLDTGRLECVLEDWITERPGFQIY--YPNRQYMSCGLRAFLD 286

Query: 289 FI 290
           ++
Sbjct: 287 YV 288


>gi|205354776|ref|YP_002228577.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274557|emb|CAR39606.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
          Length = 299

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 8/247 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 7   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 67  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 127 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
            H ++ +  L P          T   P G   +     L VNS  +    C+ G GI   
Sbjct: 186 SHAVVHY-SLTPGVSSPGFAFET---PYGMQWVKTGGMLTVNSTETWHTACLAGLGIIQT 241

Query: 245 PDYIVKD 251
           P   V++
Sbjct: 242 PRIAVRE 248


>gi|170737245|ref|YP_001778505.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819433|gb|ACA94015.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 301

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 16/285 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     VAR+ SFT AA QL +SQS++S  +  LE  +G +L  R++R +T TE G +L 
Sbjct: 13  LTALIAVARAKSFTRAAVQLGVSQSAVSHAVRALEERLGARLLARNSRTVTPTEVGERLL 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            + +    +++     L +    P G +R+       + +L   LKEFL  YPDI+++L 
Sbjct: 73  HIVAPRLKEIDAEMSALSDLGGSPRGSIRLTAPDYPSRTILAPKLKEFLPKYPDIKVELS 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +DN+ +D+  +  D  +RL + I    +  +    +         Y      P +  +L 
Sbjct: 133 IDNRFVDLVAEQFDAGVRLGEAIAQDMIAVQIGPDVRFTVVGTKRYFATHAVPRTPGDLV 192

Query: 188 KHN-----LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            H+     L+  G L       + W      RP+       L  N     +   V G G+
Sbjct: 193 HHSCVNLRLMAHGGL-------WAWEFEKGGRPVNVRVDGQLACNDIYECLAGAVAGLGL 245

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           A +P+ + +      +L+ ++ D        Y  YP   + +G +
Sbjct: 246 AYVPEDLAEPYIKAQHLIPVLTDWCPSWGGFYLYYPSRRQPSGAM 290


>gi|117619783|ref|YP_855742.1| putative HTH-type transcriptional regulator YcjZ [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561190|gb|ABK38138.1| putative HTH-type transcriptional regulator YcjZ [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 297

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 9/279 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L  F VVAR  SFT AA QL  SQS+IS+ +  LE  +G+KL  R  R +T T
Sbjct: 1   MKENLNELTTFMVVAREQSFTRAAAQLGTSQSAISQTVKTLEQRLGLKLLSRTTRSVTPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L  +      ++++   +L     KP+G +RI       + +L   +  FL  YP
Sbjct: 61  EAGERLIALVGPALAQIDSGLSQLTALRDKPAGTIRITADEYAIRAVLWPKISAFLHHYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D   +DI  +  D  +R    I    +       I M   AAP YL     P
Sbjct: 121 DIRVELSTDYGLVDIVAERYDAGVRRGGLIAKDMIATPISPEIKMLVAAAPRYLAAHGRP 180

Query: 181 LSIQEL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              QE+   H  I     +P     F+W      R +       L  NS  ++++  + G
Sbjct: 181 SRPQEIASAHQCINL--RLPTQGGFFSWSFLEGGRELKIRGEGQLVFNSIGNVLEAALDG 238

Query: 239 SGIALLPDYIVKDNPNLVRIME-----DVITPSFTVYFC 272
            G+A LP  + +      R+ E     +++ P + +Y+ 
Sbjct: 239 YGLAYLPQSMAEPYLADGRLEEVLAGYNMVHPGYYLYYT 277


>gi|222083114|ref|YP_002542479.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221727793|gb|ACM30882.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 298

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 128/281 (45%), Gaps = 6/281 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L  F  V   GSFT AA +L LSQS++S  +  LE  + ++L  R  R L++TE G
Sbjct: 5   DFSELAAFITVVEEGSFTRAAAKLGLSQSALSYAVRMLERRLDVRLISRTTRSLSMTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       +  +++    L     KP+G +RI T     + +L   L +    YPDI 
Sbjct: 65  ERLFNNLRPAFDHIDSEIAALTALRDKPAGTIRITTFRHAARMVLWPALLKLAPEYPDIV 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    DI     D  IRL + ++   +  R    + M    +P Y  N + P + 
Sbjct: 125 VEISVDEGLTDIVAGRFDAGIRLGEQVEKDMVSVRVSPEVRMAVVGSPSYFTNRKRPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
           ++L+ H+ +++       +  + W    D    E R+S  L +N    +    + G G+ 
Sbjct: 185 RDLNNHSCVSYRQSRGGGL--YAWEFERDGVELEARVSGSLILNDNEMLENAALDGLGLV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT 280
            + +  V  +     L+R++ED   P    +  YP   ++T
Sbjct: 243 YVFESQVSQHIAEGRLIRVLEDWCPPFPGYHLYYPSRRQHT 283


>gi|207858845|ref|YP_002245496.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206710648|emb|CAR35006.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 299

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 116/253 (45%), Gaps = 20/253 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 7   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 67  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 127 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 186 SHAVVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 235

Query: 239 SGIALLPDYIVKD 251
            GI   P   V++
Sbjct: 236 LGIIQTPRIAVRE 248


>gi|167578109|ref|ZP_02370983.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 305

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 1/194 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V ++GSFT AA  L + ++++SR++  LE ++G++L +R  R L LT
Sbjct: 1   MAADPNDTLIFVRVVQAGSFTAAARLLRMPKTTVSRRVMTLEAQLGVQLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  +     +  +L+     + +    P G LR+      G   +   L  F   YP
Sbjct: 61  EAGSLYYSHCRNMAAQLDEAHAAVSQLQSGPRGWLRVTLPYSFGTTWIAPLLAGFRQAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++++++  +  +D+  D  D A+RL   +  S L+ R+L +     YA+P YL     P
Sbjct: 121 DVRLEILASHVPLDLVADEIDIALRL-GVLADSDLVARRLGSFATGVYASPSYLMRHGVP 179

Query: 181 LSIQELDKHNLITF 194
               EL  H  +T 
Sbjct: 180 EHPGELGAHRALTL 193


>gi|107101390|ref|ZP_01365308.1| hypothetical protein PaerPA_01002427 [Pseudomonas aeruginosa PACS2]
 gi|254235047|ref|ZP_04928370.1| hypothetical protein PACG_00927 [Pseudomonas aeruginosa C3719]
 gi|126166978|gb|EAZ52489.1| hypothetical protein PACG_00927 [Pseudomonas aeruginosa C3719]
          Length = 311

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 143/303 (47%), Gaps = 28/303 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E  +  + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYL--KNC 177
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +  ++ 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGRHL 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLS 230
             P  +++L           +     D    AT+  P G       EPR   L V+ ++ 
Sbjct: 181 EHPEDLEDL---------PFLGAIHNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVL 228

Query: 231 IMQYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
             +  V G G+ LLP+ Y  ++  + +LVRI+     P  T+   Y   L  + ++ A R
Sbjct: 229 RKKAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIR 285

Query: 288 NFI 290
             I
Sbjct: 286 ALI 288


>gi|76818306|ref|YP_335865.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126457669|ref|YP_001076259.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|76582779|gb|ABA52253.1| LysR-family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126231437|gb|ABN94850.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
          Length = 306

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 5   DRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++++
Sbjct: 65  FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178
           L       D+  D  D AIRL +  Q   L  R +   T  +   A+P     H +    
Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++  L +        +    + D +    V RP  +P +     +   +  Q    G
Sbjct: 185 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 241

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290
            G+ALLP+++V+D+     +++ +    F    VY  YP A     K++A+ +FI
Sbjct: 242 DGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 296


>gi|124268707|ref|YP_001022711.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124261482|gb|ABM96476.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 319

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 104/190 (54%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +     +A+SGSFT AA++L LS++++S++I+ LE  VG+ L  R  R + LTE G 
Sbjct: 15  WPHVHALGTIAQSGSFTLAAQRLGLSKAAVSQRIAELERAVGVPLLQRTTRSVRLTEAGK 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+  + ++E + + +++ + +P G +R+   + LG+  +   L+ FL  +P I++
Sbjct: 75  QLVDETAASFAQIEQSLLGVRDLASQPQGLVRMTAPVALGRQHVGPQLESFLRAWPGIRV 134

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ ++++ +  D A+R        S +  KL        A+P YL+    P    
Sbjct: 135 ELDLSDRLVNLAHEGFDLAVR-HTSAPPDSHVAWKLCASRTLLLASPAYLRRRGTPRHPD 193

Query: 185 ELDKHNLITF 194
           EL  H+ + +
Sbjct: 194 ELAGHDCLPY 203


>gi|116050842|ref|YP_790335.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586063|gb|ABJ12078.1| putative ranscriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 323

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 116/245 (47%), Gaps = 9/245 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSFT AA+ L  S +++SRQ++GLE  +  +L  R+ R + +TE G + +
Sbjct: 7   IRTFVRVVEHGSFTQAAQTLGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTESGLRYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +     ++++S    SG+LR+    +LG   L   L ++L  +PD+ + L 
Sbjct: 67  EHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPDVSVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L      +  +  D  I L + +  S+L+ R L  +     AAP YL     P + ++L 
Sbjct: 127 LAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPRTPEDLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  +      P C +   W+   +R  GE  +     L+VN   +       G G+ LL
Sbjct: 187 RHRCLNVA--APSCPQ--GWVFVGER--GETLLDLDEALKVNLPEAACAAAAAGLGVCLL 240

Query: 245 PDYIV 249
           P ++ 
Sbjct: 241 PGFVA 245


>gi|325928945|ref|ZP_08190106.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325540634|gb|EGD12215.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 307

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 130/294 (44%), Gaps = 20/294 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G F  AAE L +  +++S+ IS LE  +G+ L  R  R + ++  G+  +
Sbjct: 7   IRAFARVVETGGFNRAAESLQMPNATLSKSISALEKHLGVTLLERSTRRVRVSNDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+  +  L  +   P G+LR+ T       LL   L EF   YPDIQ+QL 
Sbjct: 67  ARVRHLLTELDDVEATLGRAQGSPKGRLRVDTGGSTACGLLIPALPEFCARYPDIQLQLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DCAI  R      +LI RK+ ++     A+P YL     P   ++L 
Sbjct: 127 VTDRTVDVIGENIDCAI--RSTADDGALISRKIGSLAWTTCASPDYLARYGVPTHPEQLK 184

Query: 188 KHNLITFGDLIPKC--------MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                  G              ++D   L  V      P  S + VN   + +   + G 
Sbjct: 185 SPAFPVVGYFSAHSGKAPPLHFLDDGAPLEIV------PNCSVM-VNESNAHLATGLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+    D++V+   +   LV +++D       V+  Y  + + + K++ F  ++
Sbjct: 238 GLIHTLDFMVRPAIERGALVPVLQDWRPAPLDVFIAYAPSRQLSTKVRVFIEWV 291


>gi|123443978|ref|YP_001007948.1| putative DNA-binding transcriptional regulator [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090939|emb|CAL13821.1| probable lysR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 303

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE+E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLESELNVKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + + L
Sbjct: 66  YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P      
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233
                       P  M +F+WL    RP     +  P     Q+        N   ++++
Sbjct: 181 ------------PSDMTNFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKAGAGIAYAP 240


>gi|59713207|ref|YP_205982.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59481455|gb|AAW87094.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 316

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 99/174 (56%), Gaps = 1/174 (0%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V   GSFT+ AEQ +L +S IS+QIS LE E+G++L  R  R L+LT  G+++      +
Sbjct: 13  VTELGSFTNVAEQKNLDRSVISKQISRLEEELGVRLLNRTTRSLSLTAAGNEMVNQAKLL 72

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              L  T    Q    +P G LRI +++  G+  +Q  +  F   YPD++ +L L+++ +
Sbjct: 73  RDLLNNTHRLAQNYHSEPRGILRITSSMMFGRQYVQDAISVFQKQYPDVKCELRLEDRVV 132

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           DI  +  D   R+ +P ++SSLI RK+    +   A+P +++   +  +I++L+
Sbjct: 133 DIVQEGFDIGFRIGRP-KNSSLISRKIARSRLLIVASPDFIQQHGKIETIEKLE 185


>gi|70734267|ref|YP_257907.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68348566|gb|AAY96172.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 303

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 139/306 (45%), Gaps = 29/306 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L+VF  V   GS + AAEQL  + S++SR +S LE ++   L  R  R + LTE+G  
Sbjct: 6   DELQVFVCVIECGSISAAAEQLAQTPSAVSRSLSRLEAKLDTTLINRTTRRMDLTEEGRY 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++  +  L      PSG+LRI        + +   + EF  LYPDIQ++
Sbjct: 66  FFEQAKLILDQMDELEERLSSRQRNPSGRLRINAASPFMLHAIVPYVAEFRSLYPDIQLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  ++  ID+     D AIR+   +  S+L  R L    +H  A+P YL     P S+ E
Sbjct: 126 LNSNDLIIDLLEQSTDIAIRI-GVLADSTLHARSLGCSPLHILASPDYLARHGTPQSVAE 184

Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H L+ F        E  N W L  V  DR   +P IS    +S  ++    + G GI
Sbjct: 185 LAGHTLLGFTQ-----TETLNHWPLRHVHGDRWQIQPGIS---ASSGETLRHLALEGQGI 236

Query: 242 ALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTG---KLKAFRNFIF 291
           A L  ++  D+       P L         P   VY+      +N+    +++ F +FI 
Sbjct: 237 ACLSHFMTIDDIRAGRLQPVLASFNSGYRQPINAVYY------RNSQLALRIQCFLDFIQ 290

Query: 292 LKARDW 297
            K  D+
Sbjct: 291 GKLADY 296


>gi|66045716|ref|YP_235557.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256423|gb|AAY37519.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 305

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 132/289 (45%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL +Q
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASHEYLEQHGTPLDLQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H +I +            ++A     +       + VNS    +  C  G G+  +
Sbjct: 183 ALAQHQVIEYFSTSTGKRYGLEFMAD-GMGVAHASACSIAVNSADGYVAACEAGFGLIQV 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y V     +  LV ++     P   +   YP   + + +++ F +++
Sbjct: 242 PRYHVAAQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWL 290


>gi|302186706|ref|ZP_07263379.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 294

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 11/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  +ISR+++ LE ++G++L +R  R ++LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSVSLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H  ET +  L+  +   SG LR+      GQ ++   L   +   P + I L 
Sbjct: 66  PHAKTMLHISETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQENPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL    +P  + EL 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLTRRGQPSLLDELR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  IT        M  + ++   + P+          NS  ++   C  G G+A+L  +
Sbjct: 185 QHPCITL-----HAMPYWPFIRDGE-PVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYW 238

Query: 248 IVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286
            V+      +L++I  EDVI    +V    P   +   +++ F
Sbjct: 239 DVQQEIREGSLLQIHFEDVIPEQLSVTAVLPTRQRVPNRVRLF 281


>gi|298717157|ref|YP_003729799.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361346|gb|ADI78127.1| Uncharacterized HTH-type transcriptional regulator yeaT [Pantoea
           vagans C9-1]
          Length = 304

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 126/255 (49%), Gaps = 12/255 (4%)

Query: 1   MSFDWDKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M    DKL +     R+   GSF+ A   L L Q +ISR ++ LE  +  +L +R  R L
Sbjct: 1   MGNKMDKLLLMTCFVRTVERGSFSAAGRDLGLGQPNISRHVANLEEHLQTRLLHRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT +G + +     +   +E +    +E +V P+G LR+A    L    L  ++  FL 
Sbjct: 61  SLTPEGERYYLEARRILEAVEESDSSFRE-NVSPTGLLRVACPTALAHTFLVPHIPVFLD 119

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP++++ L ++++ I++  + A+ AIR+   ++ S++  R+L        A+  YL   
Sbjct: 120 RYPELELDLQINDRYINLVDEGAELAIRIGH-LEDSAMRARRLGMFVRVCVASNKYLAKH 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P + ++L KH+ + +  L       F       + I  P    L+VNS  +I ++   
Sbjct: 179 GTPDTPEDLKKHDCLIYTLLTTGATWRF-------QDISVPVSGRLRVNSPEAIQKFVNA 231

Query: 238 GSGIALLPDYIVKDN 252
           G+GIA  P+++ K+ 
Sbjct: 232 GTGIAQGPEWLFKEG 246


>gi|209549263|ref|YP_002281180.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535019|gb|ACI54954.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 305

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 22/295 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSF  AA+ +   +S++S+ +  LE  + +KL  R  R +T+T QG   +
Sbjct: 7   IRAFVRVVEAGSFAKAADTMGAPRSTVSKLVQDLEASLSLKLLERTTRSVTVTPQGIAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+    E     +  SGKLR+         +L   L EF  LYP+I++ L 
Sbjct: 67  ERALRLIADLDEMNNEATRGRLATSGKLRVDIGGTFANAILIPRLPEFYALYPEIELHLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  +  DI  +  DC IR    + S+S++ RKL ++ +   A P YL+    P S  +L 
Sbjct: 127 VTERQADIVEEGIDCVIRAGD-LSSASIVARKLCSVEIVTCATPGYLEKYGVPASPSDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISC-----LQVNSYLSIMQYCVLG 238
           + ++          ++ F   +    P+    GE +I       L  +   + +Q  + G
Sbjct: 186 RDHIF---------VQYFFARSLKAAPVRLMKGEEKIEIYSPIKLSTSDATAHLQGILAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI    +++ + +     LV IM D   P + V+   P     + K + F +++
Sbjct: 237 LGIGQTFEFLARPHIARGTLVPIMNDWAPPRYPVHILRPAGRFPSVKYQVFADWV 291


>gi|254228928|ref|ZP_04922350.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151938605|gb|EDN57441.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 321

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 140/306 (45%), Gaps = 29/306 (9%)

Query: 2   SFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + DW   ++ +  V   GSF  AA +L+ + S+IS+++  LE ++G++L  R  R ++ T
Sbjct: 26  TMDWIQSVKSYIRVVEEGSFNAAARKLNTTSSAISKRVQWLEDKIGVQLLKRTTRSISQT 85

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  ++         ++   E +  +  P+G L+I  T+ +G   L   L +FL  YP
Sbjct: 86  EAGALFYQRAKNQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYP 145

Query: 121 DIQIQL--ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           DI +QL   L  +  ++S+D      R  + + S S     L       YAAP YLK   
Sbjct: 146 DITLQLTTTLPGQLPELSLDL--FISRELEQLNSLSFKATALFEHKAQFYAAPSYLKKYG 203

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL- 237
            P  +++L +HN++ +G+                R I   R   + ++   +      L 
Sbjct: 204 TPQCVEDLTEHNVLIWGE-------------KPSREIKTNRGKRISLSGNFATTNPEALF 250

Query: 238 -----GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                G GI +  + ++KD+     LV I+ D+     TVY  YP+      + K F + 
Sbjct: 251 HGAKRGMGILMTNNVMIKDDLKSGALVPILPDITADKATVYAYYPKLDYQHTRTKLFLD- 309

Query: 290 IFLKAR 295
            +LK+R
Sbjct: 310 -YLKSR 314


>gi|238910365|ref|ZP_04654202.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 299

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 116/253 (45%), Gaps = 20/253 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 7   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 67  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 127 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 185

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 186 SHAVVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 235

Query: 239 SGIALLPDYIVKD 251
            GI   P   V++
Sbjct: 236 LGIIQTPRIAVRE 248


>gi|116253006|ref|YP_768844.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257654|emb|CAK08751.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 300

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 130/264 (49%), Gaps = 18/264 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G F+ AA    ++ S++S+ ++ LET +G +L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERGGFSAAATARRMTPSAVSKLLTRLETRLGARLVNRSTRRLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     +   +   + E Q S+  + SG++RI T+   G ++L   +  F+ L+P + + 
Sbjct: 71  YERCITILADI--AEAERQASTGEQASGRIRINTSGSFGNHVLAPLVPTFMALHPAVTLD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  + AD AIR   P+++SSLI RKL        A+P YL    +P +I +
Sbjct: 129 ISHTDRIVDLMEERADVAIRA-GPLKNSSLIARKLGVTGKIIVASPGYLSRHGKPRTIAD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241
           L  H  I F     + +E ++      R  GE    P    LQV    S+    + G+G+
Sbjct: 188 LRHHCRIGFS--YARAIEGWSL-----REGGETVTIPITPGLQVGDGESMRHLALSGAGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDV 262
           A L  + V+   D   LV ++E+ 
Sbjct: 241 ARLAAFTVRADIDAGRLVPVLEEA 264


>gi|88857152|ref|ZP_01131795.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
 gi|88820349|gb|EAR30161.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
          Length = 315

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 140/296 (47%), Gaps = 12/296 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+  +++L+   VF  V   G+ T AA+ + LS++ +S  +  LE+++G+KL  R  R L
Sbjct: 1   MNVSFEQLKSMVVFAQVVEQGNLTAAAKHIGLSRAVVSYHLKKLESQLGVKLLNRSTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT+ G++ ++    +  +      +++    +P G L+I   +++G  ++   L EF  
Sbjct: 61  SLTQAGNEYYQSCRIIAEQATLANQQMENLKHEPEGLLKITCPVNVGLQMVVPALNEFRR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP I++ ++L ++ ++I  +  D AIR   P+  SSL   KL T+      AP Y K  
Sbjct: 121 LYPKIELDVMLTDEVVNIMQEGIDLAIR-GAPLVDSSLQASKLSTLATCLCGAPDYFKKR 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P +  +L++H+ + +     K       L+   R         +  N+  +   +   
Sbjct: 180 GRPTTPTDLEQHDWVIY-----KLTSGAIKLSKGSRSYSVAVKGTISTNNAAARTAFIEG 234

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  +P Y          L  I++D    +  +Y  +P    ++ KL+   +++
Sbjct: 235 GHGLGRIPVYDAWPKIQAGTLETILDDYQLSNIDIYGVFPPGSASSKKLRLLIDYL 290


>gi|254248204|ref|ZP_04941524.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124874705|gb|EAY64695.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 303

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 134/297 (45%), Gaps = 19/297 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AAEQL L + ++S  +  LE  + I+L  R  R + LT +G+  +
Sbjct: 7   MRTFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTAEGATYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +   +++   P G +R+        N +   L +F   YPD+++ + 
Sbjct: 67  ERCVRLLADLDDVETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPDLRVVIS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P S  EL 
Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRVGEMAQINCASPAYLARHGTPRSPDELP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  +  G    +   + +W    D   GE       S + VNS  + +  C+ G G+  
Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDSGELHAVKMHSVVSVNSSQAYLACCLAGLGLIQ 242

Query: 244 LP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            P D +     + +LV ++ +       V   +P     TG+  A R  IF+   DW
Sbjct: 243 APRDGLAPLLADGSLVEVLPEWNAAPLPVSVVFP-----TGRHLAPRVRIFV---DW 291


>gi|198246047|ref|YP_002217567.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197940563|gb|ACH77896.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326625349|gb|EGE31694.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 300

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 116/253 (45%), Gaps = 20/253 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 8   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 68  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 187 SHAVVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236

Query: 239 SGIALLPDYIVKD 251
            GI   P   V++
Sbjct: 237 LGIIQTPRIAVRE 249


>gi|167838893|ref|ZP_02465670.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 323

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 124/257 (48%), Gaps = 21/257 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EFL  YP+
Sbjct: 65  AGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLPEFLRRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++Q+ + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L+    P
Sbjct: 125 VRVQIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLQQNAPP 184

Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231
           L   +L   + +    GD        FN +A    P G       EPR   L     ++I
Sbjct: 185 LVPDDLAGFDTLDTPSGD----GRHVFNLIA----PDGTRHAHEHEPR---LVTADLMTI 233

Query: 232 MQYCVLGSGIALLPDYI 248
            +  + G GIA LP+ +
Sbjct: 234 REAVLDGVGIAALPESM 250


>gi|77459989|ref|YP_349496.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383992|gb|ABA75505.1| putative LysR-family transcriptional regulatory protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 311

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 113/265 (42%), Gaps = 12/265 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  V   GSF+  A +  ++ SSISRQI  +E  +  +L YRH R +T TE G  L 
Sbjct: 12  LRLFVAVLDHGSFSEVARREGVAPSSISRQIQLMEQALNQQLLYRHTRAVTPTEAGRMLG 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +LE  +  LQE   +P+G +RI   +  GQ  L   L      YP +Q+ + 
Sbjct: 72  HHARLVLVQLEEAEQALQEQQSEPTGLVRINAPVVFGQRHLTPWLGRLCERYPKLQLDIQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  ID   + AD   R+  P+  SS+  R L        A+P YLK    P    +L 
Sbjct: 132 QTDHYIDPLQEGADLLFRI-GPLHDSSMQARILAPHRFQVAASPAYLKRYGTPQHPDDLA 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALLP 245
           +H  + +            W    D+    P      +  N   ++ Q  V G G+ + P
Sbjct: 191 RHQCLAYKG----ATGQQRWFFRQDQGEWAPYAVKGPITGNHADTLTQAAVQGLGLVMFP 246

Query: 246 DYIVKDNPNLVRIMEDVITPSFTVY 270
            +++ +      + E  + P    Y
Sbjct: 247 SWLIGEA-----VREGTLVPVLGEY 266


>gi|87121544|ref|ZP_01077432.1| transcriptional regulatory protein [Marinomonas sp. MED121]
 gi|86163076|gb|EAQ64353.1| transcriptional regulatory protein [Marinomonas sp. MED121]
          Length = 295

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 96/182 (52%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  + ++GSF  AAE+L +   ++S+ I  LE E+  +L  R  R ++LTE G K +
Sbjct: 1   MRIFVTLVKAGSFAKAAERLQIKSPTVSKAIQLLEKELHTQLVVRSTRTMSLTETGQKYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + ++L+  + + +++   P GKL + + + LGQ+LL   + +F+  YP++++++ 
Sbjct: 61  EKADFILNELDELENDTKQAQGTPKGKLMVTSPVSLGQHLLAPLMPKFMKRYPELEVEID 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N   D+  D  D AIR +KP     L    +  +     A+P YL     P    EL 
Sbjct: 121 LSNHWRDLKRDGYDVAIRSKKPGADLGLYCLPIKPLLPILVASPDYLAEHGTPAHPNELK 180

Query: 188 KH 189
            H
Sbjct: 181 AH 182


>gi|115352763|ref|YP_774602.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282751|gb|ABI88268.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 295

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 13/248 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R I G+E  +G +L  R  R L+LT+ G   H
Sbjct: 7   MRLFIKVAELHSFARAATELNISNSSATRLIMGIEDRLGARLLNRTTRSLSLTDAG---H 63

Query: 68  RVTSEVYHKLETTQIELQESSV-----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              +++ H +E  +I+  E ++     +P G L+IA  +  G ++L   +  F   +P I
Sbjct: 64  LYLAQIRHVIE--EIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTQHPAI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++ + ++ +D+  +  D  + L + I +++L+ R L  +     AAP Y++    P+ 
Sbjct: 122 VPEVTIVDRHVDLVSEGFDVGLLLSQRISTNTLVTRPLTRLKRIVCAAPRYVEAHGAPIH 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H+ +TF          F+   T  R    P  S    N  L I  + + G GIA
Sbjct: 182 PHDLASHSCLTFHADFAGEYLSFDHEPT--RVAVRPNKSASSNNIGL-IRNWALSGMGIA 238

Query: 243 LLPDYIVK 250
           +LPD++V+
Sbjct: 239 VLPDFLVE 246


>gi|332558400|ref|ZP_08412722.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332276112|gb|EGJ21427.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 297

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 130/271 (47%), Gaps = 12/271 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  VAR+ S + A   L L  +++ R+I+ LE  +G+ LF +  +G  LTE 
Sbjct: 1   MDWDDLRIFLGVARAESLSGAGRGLRLDPATVGRRIARLEEALGVPLFAKSPQGYALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L          +     +LQ  +   SG++RI         LL   L +     P +
Sbjct: 61  GQRLLAHAERAEQAVGEAAEDLQ-GAAGLSGQIRIGAPDGCANYLLPQVLAQICTDNPGL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q++   +  ++S   AD AI + +P ++  L  +KL    +H  A+  YL       +
Sbjct: 120 EVQIVALPRVFNLSKREADLAIGVSRP-EAGRLRVQKLADYRLHLAASAEYLSRHPPIRA 178

Query: 183 IQELDKHNLITF-GDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++L  H L+ +  D+I  K ++    L +   P     +S +Q+N       +   G+G
Sbjct: 179 LEDLKAHQLVGYIPDMIFDKELDYLTGLGSGSVPFASNSVS-VQLN-------WLRAGAG 230

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271
           + ++ D+ +   P LV+I+ + ++ S + + 
Sbjct: 231 VGIVHDFAMPSAPELVKILPESLSLSRSFWL 261


>gi|332163127|ref|YP_004299704.1| putative DNA-binding transcriptional regulator [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|83318556|emb|CAI77370.1| putative lysR-family transcriptional regulator [Yersinia
           enterocolitica W22703]
 gi|318603990|emb|CBY25488.1| putative transcriptional regulator LYSR-type [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667357|gb|ADZ44001.1| putative DNA-binding transcriptional regulator [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 303

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE+E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLESELNVKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + + L
Sbjct: 66  YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P      
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233
                       P  M +F+WL    RP     +  P     Q+        N   ++++
Sbjct: 181 ------------PSDMTNFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKAGAGIAYAP 240


>gi|114569100|ref|YP_755780.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114339562|gb|ABI64842.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 296

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 1/187 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F  VA  GSFT AAE+  ++  + S+QI+ LE  +  +LF R  R + LT+ G  
Sbjct: 5   DALRLFCSVAELGSFTKAAEREAMTPGAASKQITALEQRLQARLFERTTRSVRLTDAGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L         + +  +  + ++   P+G LR+A  +D G   L   +  F+  +P ++++
Sbjct: 65  LLDRVRPWLDEYDGLEQGVADARSAPAGVLRVAAPVDFGARRLMPIITRFMNDWPGVEVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D  IR+   +  S+LI ++L    M   A+P YL     P    +
Sbjct: 125 LSLADRMVDLVNEGFDVGIRIGN-LPDSALIAKRLAAACMSVVASPDYLARAGRPEHPSD 183

Query: 186 LDKHNLI 192
           L +H ++
Sbjct: 184 LAQHEIV 190


>gi|77458675|ref|YP_348181.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382678|gb|ABA74191.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 305

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 134/291 (46%), Gaps = 12/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F    R G ++ AA +L +S SS++RQ++GLE E+G  L  R  R  ++T  G    
Sbjct: 7   LKMFVETVRCGGYSSAARKLGISTSSVTRQVAGLENELGASLLNRTTRNTSVTVAGQTYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++     + +      G+LRI+  ++ G+ ++   L E L  +P ++I + 
Sbjct: 67  EKAVAILDAIDEADAVVADRGSDAQGRLRISVPVEFGRQIIAPQLGELLDRHPGLEISVS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D+  +  D ++RL   + S  ++ +++        A+P YL     P   ++L 
Sbjct: 127 LSDQVSDLLSEQIDVSVRLGSSVVSDDIVSKRVGGFQRWIVASPDYLSGHAVPAHPRDLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + F           +W    D    +  +   LQ N+   + +  V G G+ALL D
Sbjct: 187 EHQCLRF----DYAGSHQHWTFQGDEETIQLNVHGRLQSNNADILREAAVAGRGVALLAD 242

Query: 247 YIVK---DNPNLVRIMEDV-ITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V+   +   L R++E   + P   S  +   Y    + + ++  F +F+
Sbjct: 243 WLVRADVEAGRLTRLLEGYEVNPGNASCCINALYLPNHRGSSRINVFIDFL 293


>gi|148260287|ref|YP_001234414.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146401968|gb|ABQ30495.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
          Length = 315

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 133/293 (45%), Gaps = 10/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA + SFT AA +L +S+ ++S+ IS LE  +G  L  R +R L+LTE G
Sbjct: 6   DLEAWALFAKVAETRSFTRAASELGISKPTVSKAISRLEARIGTALLNRTSRRLSLTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R    +  + E  + E  + +  PSG +R+   +  G   +   L E    YP++ 
Sbjct: 66  RRAARSAGRILTEGEALETEAMDQATAPSGLVRLTAPMSFGIAHVAPLLPELFETYPELS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+     D AIR+   +  S+L  R++  +      AP Y +    P   
Sbjct: 126 VDLHLADEVVDLVGGGFDIAIRIAA-LPDSALRTRRVCRVRRLLVGAPEYFERQGRPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L +H  + +  L       F       VD   G P    L+VN+  ++    V G G+
Sbjct: 185 GDLARHVCLGYAYLPSSSRWHFRHATGEEVDVVPGGP----LRVNNADALRPMLVAGRGL 240

Query: 242 ALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A+ P+++  ++    R+   M D   P   +    P +     ++ A  +F++
Sbjct: 241 AVQPEFMAAEDIAAGRLEVAMADWSMPPIALNIVTPPSGLRPARVTAVIDFLW 293


>gi|116692700|ref|YP_838233.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170738050|ref|YP_001779310.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116650700|gb|ABK11340.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169820238|gb|ACA94820.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 303

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 134/297 (45%), Gaps = 19/297 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AAEQL L + ++S  +  LE  + I+L  R  R + LT +G+  +
Sbjct: 7   MRTFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTAEGATYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +   +++   P G +R+        N +   L +F   YPD+++ + 
Sbjct: 67  ERCVRLLADLDDVETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPDLRVVIS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P S  EL 
Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRVGEMAQINCASPAYLARHGTPRSPDELP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  +  G    +   + +W    D   GE       S + VNS  + +  C+ G G+  
Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDSGELHAVKMHSVVSVNSSQAYLACCLAGLGLIQ 242

Query: 244 LP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            P D +     + +LV ++ +       V   +P     TG+  A R  IF+   DW
Sbjct: 243 APRDGLAPLLADGSLVEVLPEWNAAPLPVSVVFP-----TGRHLAPRVRIFV---DW 291


>gi|289624171|ref|ZP_06457125.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651658|ref|ZP_06483001.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330869351|gb|EGH04060.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 306

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +GSFT AA++L LS S++S+ ++ LE+ +G++LF R  R L LTE+G+  H
Sbjct: 14  IETFVAVANAGSFTAAADRLSLSNSAVSKSVARLESRLGMRLFERTTRSLALTEEGAAYH 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V + +   LE  +  L     +P+G+LRI      G+      +  F   +  ++ ++ 
Sbjct: 74  AVCTRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRIT 133

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +DI  +  D A+R+   P+  + +  R L T  +   AAP YL+    P + ++L
Sbjct: 134 FTDRFVDILEEGIDLAVRIGGPPVWPAGVAHRYLGTERVIFCAAPAYLERHGIPTTFEDL 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
             H  I FG           WL   D+   E R   + L + +  + +       GIA L
Sbjct: 194 ASHACILFGR---GDGSTSPWLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGIAQL 250

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +++++      LV I+  + T    ++  +P   ++  K++A 
Sbjct: 251 ATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQAL 295


>gi|258622452|ref|ZP_05717474.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585152|gb|EEW09879.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 299

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIVRNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L KHN + +        + +F     N++  V              ++  ++ +  + G 
Sbjct: 183 LVKHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALHKAALGGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA +P  +V     N  LV +  + +     +Y  YP
Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272


>gi|15964182|ref|NP_384535.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15073358|emb|CAC41866.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021]
          Length = 296

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT A+  L++ +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 1   MRAFLRVVETGNFTRASASLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+     L  +   P G+LR+ T       ++   L EF   YPDIQI L 
Sbjct: 61  ERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHKKYPDIQIDLG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID   +  DCAIR    +   SLI R++  +   A A+  +L+    P    +L+
Sbjct: 121 VSDRTIDYLAENVDCAIRAGT-LTDQSLIARRITEMKFVACASRDFLERHPVPQHPSDLE 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           K N    G  +PK  +   +     R   E  +S    +  N   + +     G G+   
Sbjct: 180 K-NCYVVGYFLPKTGQQMPF--HFRRGNEEIEVSGRYTVAANESTTYLAAARAGLGVIQA 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V++   N  +V ++ D       +Y  YP     + +L+ F +++
Sbjct: 237 PLFMVREDLRNGTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWV 285


>gi|293608417|ref|ZP_06690720.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828990|gb|EFF87352.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 311

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G +
Sbjct: 11  NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I IQ
Sbjct: 71  VYQRCLDMVNAAQAVMESSGQFHVEPEGVIRMSVPKAVGHFMIHPHLPEFLKRYPKIDIQ 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    +
Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGIPNHPHD 189

Query: 186 LDKHNLITFGD 196
           L +H  I  G+
Sbjct: 190 LKQHECIYLGE 200


>gi|194292790|ref|YP_002008697.1| regulatory protein, LysR:LysR, substrate-binding [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226694|emb|CAQ72645.1| Regulatory protein, LysR:LysR, substrate-binding [Cupriavidus
           taiwanensis LMG 19424]
          Length = 339

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 126/294 (42%), Gaps = 26/294 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  +  +GS + AA QL  +Q ++SR++  LE  +G++L  R    + LTE G +
Sbjct: 26  DLMQTFVRIVEAGSLSRAAAQLQTTQPTVSRRLQTLEQLLGVRLLQRSTHAMKLTEDGER 85

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+       + +++     PSG LR+      GQ +L G L  FL  YP++ ++
Sbjct: 86  CYERARELVADWARFEADVRGVGHAPSGTLRVVVPHAFGQEVLVGPLASFLRQYPEVSVE 145

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L ++  D   +  DCAI + + +    L+  +L  +     AAP        P   Q+
Sbjct: 146 WLLHDRTPDFIAEAIDCAIHVGE-VHEPGLVAVRLAEVPRAVIAAPSLFDGKPLPRRPQD 204

Query: 186 LDK----------HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           L+            N I   +L  +      +          PR+S    +S  ++    
Sbjct: 205 LEDLPWLALRTFYRNEIVLQNLQTQARHGLTF---------APRMST---DSLYALHAAA 252

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            LG G+A+   +I  ++     L+ ++         +Y  YP+A     KL+ F
Sbjct: 253 RLGLGVAVGSSWIFAEDIASGRLLHLLPQWQADPLPIYLVYPQARFYPAKLRLF 306


>gi|193077418|gb|ABO12231.2| putative transcriptional regulator LysR family [Acinetobacter
           baumannii ATCC 17978]
          Length = 310

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 116/255 (45%), Gaps = 13/255 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQKYHLAASPQYVAKYGTLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236
              EL++H  + +     K  E  N WL  V +P  E    P    L  N+  S+M   +
Sbjct: 185 HPTELNQHKCLVY-----KGFEGPNRWL--VRKPNEEWVHYPITPLLSSNNAESLMTAAL 237

Query: 237 LGSGIALLPDYIVKD 251
              GI L PD+++ +
Sbjct: 238 HSMGIVLFPDWLIGE 252


>gi|163758385|ref|ZP_02165473.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
 gi|162284674|gb|EDQ34957.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
          Length = 338

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 7/236 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  +GS + A  +L LS + +S+++  LE  +G +L  R  R ++LTE G   +
Sbjct: 7   LEIFARVVSAGSMSAAGRELGLSPAVVSKRLRRLEDRLGTRLMQRTTRQISLTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+++     G+  +  ++  F+   PD+ + L 
Sbjct: 67  ERVVAILAGIEEAEAFVSRRSALARGVLKVSAPTSFGRMHIAPHINAFMQANPDLGVNLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  SSL+ RKL  +     AA  Y++    P S ++L+
Sbjct: 127 LHDEFVDIVGDGYDLAIRIAE-LSDSSLVARKLAPVRRILVAAADYIRRNGNPDSFEDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  ++  +  P  +E  +  + + RP G      LQ NS   + +  + G GIAL
Sbjct: 186 RHVCLSPHNNDPWKLEGPSG-SMIHRPTGP-----LQTNSSEVVREAVIGGVGIAL 235


>gi|187479375|ref|YP_787400.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115423962|emb|CAJ50515.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 309

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 8/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ AA  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLFYFSQVVDQGGFSAAARVLDIPKSRLSRRISQLEERLGVRLLQRTTRRLRLTTAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+       +  +++  ++PSG + ++  I L Q +L   L EF+  +P++ 
Sbjct: 63  ERYLHYCREMTASARAAEDAMRQLQIEPSGPVVVSCPISLAQQVLAPLLPEFMSAWPEVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           IQ++  N+ +D+  +  D A+R+R  + + + L+ R+         A+P YL+    P +
Sbjct: 123 IQMLATNRRVDLINEGVDLALRVRTKLDTDAELVVRQFGAASSTLVASPAYLQRHGTPET 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L +H  ++F D   + +   +     +R +   PR+ C   N ++ +        GI
Sbjct: 183 PEDLLQHMTLSFNDPQTEVVWSLHNGKGEERHVTVAPRLCC---NDFIVLAAAAANSRGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLP    +       LV ++ D  +P   V+  YP        ++ F +F+
Sbjct: 240 ALLPTAATQTEMRRGELVPVLPDWRSPEGIVHCIYPSRRGMIPAVRVFLDFL 291


>gi|53719583|ref|YP_108569.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|126440010|ref|YP_001058720.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|167816110|ref|ZP_02447790.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167902994|ref|ZP_02490199.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167911234|ref|ZP_02498325.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|217423812|ref|ZP_03455313.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|254197791|ref|ZP_04904213.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|52209997|emb|CAH35970.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|126219503|gb|ABN83009.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|169654532|gb|EDS87225.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|217393670|gb|EEC33691.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 313

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP++Q+ L
Sbjct: 66  LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPEVQVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++    P   Q+L
Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEQHGAPQRPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             H  +  G + P    D  W   +  P GE  ++      +VN   ++      G GI 
Sbjct: 186 AGH--VCLGMVAPGLYWD-EW--KLVGPQGEQSVTLAPPPFRVNVAEALATGIREGMGIG 240

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y       N + VR+M +  +    +Y  Y           A R ++  K R W
Sbjct: 241 VLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287


>gi|296388675|ref|ZP_06878150.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 323

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 116/245 (47%), Gaps = 9/245 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSFT AA+ L  S +++SRQ++GLE  +  +L  R+ R + +TE G + +
Sbjct: 7   IRTFVRVVEHGSFTQAAQALGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTESGLRYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +     ++++S    SG+LR+    +LG   L   L ++L  +PD+ + L 
Sbjct: 67  EHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPDVSVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L      +  +  D  I L + +  S+L+ R L  +     AAP YL     P + ++L 
Sbjct: 127 LAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPRTPEDLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  +      P C +   W+   +R  GE  +     L+VN   +       G G+ LL
Sbjct: 187 RHRCLNVA--APSCPQ--GWVFVGER--GETLLDLDEALKVNLPEAACAAAAAGLGVCLL 240

Query: 245 PDYIV 249
           P ++ 
Sbjct: 241 PGFVA 245


>gi|270261913|ref|ZP_06190185.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043789|gb|EFA16881.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 296

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 11/249 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+ F  +AR  SFT AA ++ ++ S++S  I  LE ++G +L  R  R +  TE+G  
Sbjct: 2   DDLKAFLCIARLQSFTKAAAEIGVTPSALSHTIKTLEEKLGYRLLTRTTRSVAPTEEGEM 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    ++ ++     +L      P+G +R+  + D  Q L++  L +FL  YP+I I+
Sbjct: 62  LMRSLGPLFEQINDELEKLGAMRNTPTGTIRLTGSDDSVQYLIRPVLADFLKKYPEINIE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +   A P Y +    P +  +
Sbjct: 122 IGIDYGFTNIVQERFDAGIRLGESIDKDMVAVRISRDWRLCVVATPSYFQQYSAPQTPND 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSG 240
           L +HN I     I   +  + W    +   G+ + S         NS L  +   + G G
Sbjct: 182 LIRHNCINIRHSITSGI--YAW----EFEKGKHQFSVKVKGQFTANSTLHQLDAVLAGIG 235

Query: 241 IALLPDYIV 249
           IA LPDY+V
Sbjct: 236 IAYLPDYLV 244


>gi|270265239|ref|ZP_06193501.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270040873|gb|EFA13975.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 297

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 119/243 (48%), Gaps = 5/243 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A   SF  A E+L +S S++ + ++ LE  +G++LF R  R + LT++G+   
Sbjct: 7   LLAFVRAAELRSFVAAGERLGVSASAVGKSVARLEESLGVRLFNRSTRRINLTDEGALFF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  + E+   S  P GKLR++    +G  +L   L +F  LYP++++ + 
Sbjct: 67  ERCQRIVSEIENAEAEMARISDAPRGKLRVSMPA-IGYRMLVPLLADFSALYPEVELDVD 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  D A+R    +  S L+ R+L    +    AP YL+    P   ++L 
Sbjct: 126 FNDRMVDLIAEGIDVAVR-SGELADSRLMARRLGPFRLILAGAPEYLQRRGVPQGPEDLL 184

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +    P   +   W L +   P+ +     L  NS  +++     G GIA LPD
Sbjct: 185 EHACLRY--RYPGGQQLQEWRLFSDGEPVSQRIPVTLSCNSIEALIHATQEGLGIAYLPD 242

Query: 247 YIV 249
           + +
Sbjct: 243 FTL 245


>gi|220923367|ref|YP_002498669.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219947974|gb|ACL58366.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 310

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 129/272 (47%), Gaps = 7/272 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +GSF  AA +L+LS+S++ + ++ LE  +G +LF+R  R L LTE G    
Sbjct: 11  LPAFVAAVEAGSFASAAAKLNLSRSAVGKAVTRLEGRLGTRLFHRTTRSLALTEDGQAFF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L+  +  L+      +G+LR++  +  G+  +   L + +  +P +++ L 
Sbjct: 71  ESCRRALGDLQAARAMLESGRRDVAGRLRVSVPVLFGRRCIAPVLVQLVEAHPRLELDLN 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +++ +D+  D  D  +R   P++    L+ R++   HM   A+P YL     P ++ +L
Sbjct: 131 FNDRLVDVVEDGFDLVVR-NGPLRDWPGLMARRIARQHMRVCASPAYLAAHGIPHALTDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  + +G   P  +  + +      P      S ++ +   +I+   V G G+A LP 
Sbjct: 190 ARHRAVLYGR--PGRVRSWLFPQPGAAPAEVTPPSRMRFDDLGAILDAAVDGLGLAWLPC 247

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           +++  +     L  +++ + +  F  +  +P+
Sbjct: 248 WLIGADVRAGRLATVLDHLPSHVFDSHALWPQ 279


>gi|170724490|ref|YP_001758516.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169809837|gb|ACA84421.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 297

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 136/288 (47%), Gaps = 11/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F  +A + + + A + L LS    S  I+ LE  +G +L +R  R ++LTE+G  
Sbjct: 4   EDLRLFVRLAVTNNISKAGQDLGLSPPLASIHINRLEKTLGARLVHRTTRKVSLTEEGIT 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+  +++     + +   +P G L+I+     G+  L   LK FL  +P I + 
Sbjct: 64  FLPHAEEIILRVDEAMESVGKGLTRPQGVLKISAPSSFGRMHLMPALKGFLTQHPAISVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+     D  IR    ++SSSL+ RKL        A+P Y++   +P S +E
Sbjct: 124 IQLTDTMVDLVAGGFDVGIR-NSELKSSSLVARKLAVDRRIICASPEYIRENGQPSSPEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I    L     E  N    ++          ++V+   ++   C+ G G+A+  
Sbjct: 183 LRDHQCINLKGLEGWTFETLNGNVNINTK------GNVRVDQGEAVRDACINGMGVAMCA 236

Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +I  ++    +L++I++D  +    +++  YP +     K++AF ++
Sbjct: 237 TWIAYEHLKRGDLIQILKDYPLIDDASIWAIYPSSKLLAPKIRAFIDY 284


>gi|94311164|ref|YP_584374.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93355016|gb|ABF09105.1| Transcriptional regulatory protein, LysR family, substrate-binding
           protein [Cupriavidus metallidurans CH34]
          Length = 286

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 23/296 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  WD L     + R+GS++  A +L ++ ++  R+I  LET +G  +  R      LT 
Sbjct: 5   TISWDDLLTLSTLMRAGSYSACARELDITHATAIRRIRRLETALGKPVATRADGTFVLTA 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++    +    E++  +   SG +R+A T  +G  LL   L       P+
Sbjct: 65  AGRNALIAARQMEQSADRLLREIEGVASGVSGVVRVAATAAMGTCLLTPRLPALYAANPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +++L LDN+   ++   A  A+RL +P Q  +++ ++  T+H   Y AP  +       
Sbjct: 125 AEVRLELDNRVASLARRRAHIAVRLARP-QEDTVVAQRAGTVHFGLY-APAGMTVATALA 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S   L    L+  G  +P    +  W  +++R          Q NS L++ Q    G G+
Sbjct: 183 SDTPL--CGLLDEGFTLP----EVEWPKSLNRRF------AFQSNSLLAVSQAVRTGLGV 230

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           ALLP Y+   +P L  + +DV   +  ++  YP   +   +   FR  I     DW
Sbjct: 231 ALLPHYLAAGDPGLT-LAQDVPEVTREIWLAYPAEFRGASR---FRPVI-----DW 277


>gi|326794982|ref|YP_004312802.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326545746|gb|ADZ90966.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 299

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 127/271 (46%), Gaps = 8/271 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA +GSF  AAE   +S  S+S++IS LE  +G +L +R  R L+LTE G  L+
Sbjct: 6   LTLFAYVADTGSFNKAAEVAGISTPSLSKKISKLEKSLGAQLIHRTTRRLSLTEAGESLY 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++      +  +S   SG ++++     G+ LL   + EF   +PDI + + 
Sbjct: 66  VHAKNIEEQVNDAVASVSNASRGLSGTIKMSVPTISGELLLSEAIAEFCHQHPDISVDMR 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN   ++  +  D AIR    ++ SSLI + L+  +     +P Y+    EP +  +L 
Sbjct: 126 LDNGFANLIEEGLDLAIR-TGILEDSSLIAKPLIQSNWIVCCSPDYINKYGEPETPDDLK 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            HN + +     +    ++W  T        RIS  +  N+  ++ +  + G GI  +P 
Sbjct: 185 THNCLAY---TYQAKGSYDWRFTHQGEELTVRISGSIATNNAQALRKAALAGFGIVYVPR 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
             V ++     L  I+ D       VY  YP
Sbjct: 242 CCVYEDLVAGKLTAILTDYQPRQLGVYAIYP 272


>gi|162149248|ref|YP_001603709.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545016|ref|YP_002277245.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787825|emb|CAP57423.1| putative transcriptional regulator LysR [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532693|gb|ACI52630.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 301

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 144/301 (47%), Gaps = 20/301 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V   GSF+ AA QL ++ S++S+ I+ LE+ +G++L  R  R L+L+ +G   
Sbjct: 7   EMQVFVRVVECGSFSEAARQLFMTPSTVSKLIARLESRLGVRLIERSTRRLSLSAEGQLY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  +L+  +  + +     SG +R++ ++  G   L+  L  F    P++ + L
Sbjct: 67  YERGQALLAELDDMEQTVSQGMRHTSGIVRVSASVAFGTLGLEPLLPAFWSACPNVIVDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ID+ +D  D A R+ K +  S+L  +++ +      A+P YL     P ++ +L
Sbjct: 127 SLSDEIIDLFLDRTDIAFRVGK-LADSTLTTQRIGSARRKIVASPAYLARHGTPDTVDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATV------DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +HN + F         +F   A V       R +       L  N+  ++ +  V G G
Sbjct: 186 ARHNCLGF---------NFRRAAPVWPLREGGRIVDRMVHGTLLANNGETVRRLAVAGMG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +A L +Y V+++    R++E +          ++  Y    +   +++ F +F+  K R 
Sbjct: 237 LARLGNYHVREDIAAGRLVEVLAQAGIHDEEDIHAIYSGTQRMPQRMRVFLDFVIPKLRA 296

Query: 297 W 297
           +
Sbjct: 297 F 297


>gi|186470480|ref|YP_001861798.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196789|gb|ACC74752.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 313

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 16/281 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    ++A  G++T AA +L +S++++S++IS LE   GI L  R  R + LTE G 
Sbjct: 10  WTHLHWLTMLAEQGTYTAAAARLGVSKAAMSQRISELERAAGISLVQRTTRSVRLTEAGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T   Y ++  +  +++E S  P G++R+   +   +  L   L EFL   P +++
Sbjct: 70  QLVDATRGQYAQIAASFAQVRELSGVPRGQVRVTAPVAFARQQLVPKLPEFLSANPAVRV 129

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           QL + ++ + ++ +  D AIR   +P    + +  KL        A   YL+    P S 
Sbjct: 130 QLEVSDRLVSLATEGFDLAIRHTAEP--PDTHVAWKLCDTRSVIVATRAYLRKRGMPKSP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            EL  H+ + +    P+ M +  W            RP+  P       N+  ++    +
Sbjct: 188 DELASHDCLFY----PRSMGEPMWSFERKSARKNTARPVALPVKGPFCANNSETLRDAAL 243

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEAL 277
              GIAL+PD+  +      +++  V+ P + V   + E L
Sbjct: 244 ESLGIALVPDFTAQAAVQAGKLV--VVLPDWRVTGAFAEQL 282


>gi|107028439|ref|YP_625534.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686434|ref|YP_839681.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|254250479|ref|ZP_04943798.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|105897603|gb|ABF80561.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652149|gb|ABK12788.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|124879613|gb|EAY66969.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 301

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 27/300 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  VA   SFT AAE L + +  +S  +  LE ++G+ L +R  R + LTE G  
Sbjct: 5   DALLIFARVAEMASFTRAAESLGIQKGRVSTVVRTLERDMGVALLHRTTRRVQLTEDGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   +++  +++  Q           G+LR+    +L ++++   L + +  +PD++++
Sbjct: 65  FYARATDLLAEVQELQSMFSGRGASLRGRLRVDMPTELARSVVVPALPQLMAAHPDLELE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC IRL  PI   +LI R L  + M   A+P YL     P ++ +
Sbjct: 125 LSSTDRRVDLVREGFDCVIRL-GPIADETLIARPLGRLRMTNAASPDYLARHGVPRTLAD 183

Query: 186 LDK------HNLITFGDLIPKC----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           L        H  +T G   P       + + WL         P  S +QVNS  +     
Sbjct: 184 LHSQGHRMIHYTLTLGARHPGWEYPDGDGYAWL---------PLPSAMQVNSVQTYHAAG 234

Query: 236 VLG-----SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G     +G + L  +I  ++  LV ++ D+                 + +++AF ++I
Sbjct: 235 LAGIGLIQAGYSALAHHI--ESGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFMDWI 292


>gi|319796367|ref|YP_004158007.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598830|gb|ADU39896.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 308

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 135/295 (45%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F   A SGSF+ AA +L L+ +++S+ ++ LE  +G++LF R  R LTLTE G +
Sbjct: 5   NHLESFVQSAESGSFSAAARRLGLTPAAVSKNVARLEARLGVRLFQRSTRRLTLTEGGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      L+     L +   +P+G L+++     G+  +   + +FL  YP I   
Sbjct: 65  FLAQIGGPLATLQEAVAGLAKDDGQPAGTLKVSMGQAFGREHVLPMMGDFLARYPSILPD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              DN+ +D+  +  D AI     + S  ++ R+L  IH+ A A+P Y+     P    +
Sbjct: 125 WHFDNQQVDLVGEGFDAAIGGGIDL-SPGVVARELSRIHVVAVASPAYMAGRAPPAQPAD 183

Query: 186 LDKHNLI-----TFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L   + +       G L    ++      ATV+ P   PR      N   +I    +LG 
Sbjct: 184 LAGFDALLRRSSPTGRLRSWTLQHSGGQQATVELP--RPRAI---FNDPEAIAHAALLGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+A+LP   V+    +  LVR++ +    +  V+  YP       K + F +F+ 
Sbjct: 239 GVAMLPMPFVERGLRSGELVRLLPEWHFDAGVVWLYYPSKKLLPPKTRVFVDFVL 293


>gi|292489435|ref|YP_003532322.1| HTH-type transcriptional regulator YcaN [Erwinia amylovora
           CFBP1430]
 gi|292898348|ref|YP_003537717.1| LysR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291198196|emb|CBJ45302.1| LysR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291554869|emb|CBA22768.1| Uncharacterized HTH-type transcriptional regulator ycaN [Erwinia
           amylovora CFBP1430]
          Length = 293

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 19/287 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F +VA  GSFT AA +  L +SS+S++I+ LE  +G++L  R  R L LT  G +  
Sbjct: 9   MALFALVAGCGSFTAAATRAGLPKSSVSQRINQLEQTLGLRLINRTTRQLNLTFAGERYL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E   + ++     PSG+LRI +   +   LL      F   YPD+ +++ 
Sbjct: 69  VHCQEIVQASERAGLAIERLRDNPSGRLRITSPAGIAATLLARVNTAFQQKYPDVTLEVS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  D+     D A+R  KP Q SSLI R++        A+P YL +       ++L 
Sbjct: 129 VSDEMCDLVQSRFDVALRTGKP-QDSSLIGRRIGDGQRRLVASPGYLADYPPLAHPRQLS 187

Query: 188 KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIA 242
           +H  I        L+ +  E + WL           +    +   L   + C L S GI 
Sbjct: 188 EHRCIAHRAWNEWLLQRNDEYYRWL-----------LPPTHMTDNLLYARECALSSGGIT 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LLP ++  +   LV+++         ++  YP    N+  L  F +F
Sbjct: 237 LLPRFLCCE--KLVQVLPAWEVEGNELWLVYPSRKLNSPALSRFVDF 281


>gi|260555397|ref|ZP_05827618.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411939|gb|EEX05236.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 301

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 136/261 (52%), Gaps = 14/261 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+  A   +++ S++S+ IS LE  +G++L  R  R   LT +G + 
Sbjct: 11  ELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTNEGCQF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           + +  ++ + L+  +  +  + + P G++RI T+     + L   +  F   YP+I+++ 
Sbjct: 71  YELGIQILNDLDELEQAVTANHI-PKGRIRIHTSFSYWTHFLLPCISLFNQRYPEIELEA 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ I++     D AIR   P++SS+L+ R L + +     +P Y++    P    EL
Sbjct: 130 HLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTYKQYVCSPVYIEKYGRPEHPDEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +H L+     +    ++  WL   AT +  +   ++  L+VN   +I+Q  + G+GIA 
Sbjct: 189 HEHQLLD----VSYQRQNKTWLFKKATQEISLTPSKV--LKVNHGEAILQLALAGAGIAQ 242

Query: 244 LPDYIVKD---NPNLVRIMED 261
           L ++ +++      LV+I+ED
Sbjct: 243 LNEFQIRNALQQKQLVKILED 263


>gi|253997383|ref|YP_003049447.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253984062|gb|ACT48920.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8]
          Length = 301

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 6/248 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +D + +  F  V     F+ AA +L +S+SS+S+ ++ LE  +G  L  R  R L+LTE 
Sbjct: 2   YDLNLMITFAHVVNEQGFSAAARKLGVSRSSVSKAVAKLEHNLGASLLNRSTRHLSLTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      + +  + +  Q  ++  S +P G L++A ++  G   +   + +FL  YP++
Sbjct: 62  GASFFDYCTRISDEADQAQKMIESLSAQPRGVLKVAASVAFGTLHIAPAVGDFLHRYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            I + + ++ +D++ +  D  I + R P +  +L+ +KL  I     A P Y K    P 
Sbjct: 122 DIDMTITDRVVDLAEEGYDLVICVTRNPPE--ALVAKKLAPIRRRLCATPDYFKQFGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S Q L +HN +   D I              +    P    L++N   ++ Q  + G G+
Sbjct: 180 SPQALVQHNCL---DYIHSGDSGLWRFEVAGKETLVPVSGRLRINDDEALSQVVLGGFGL 236

Query: 242 ALLPDYIV 249
           ALLP +I+
Sbjct: 237 ALLPTFII 244


>gi|163733908|ref|ZP_02141350.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
 gi|161393019|gb|EDQ17346.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
          Length = 293

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 137/302 (45%), Gaps = 16/302 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +WD+++  + VAR G+ + AAE L +  +++ R +  LE  +G+KLF RHARG T T
Sbjct: 1   MMNNWDEIKTAFQVARMGTVSGAAEVLGVHHATVIRHVDALEGRLGVKLFQRHARGYTAT 60

Query: 61  EQGSKLHRV---TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           E G  L RV   T + +H+L   +I+ + + V  SG L + + IDL   ++   L  F  
Sbjct: 61  EAGQDLLRVAQATDDQFHQL-AGRIKGRGNEV--SGDLVVTSLIDLSSRMVP-VLVAFQN 116

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YPD+ ++ +   +   +    A  AIR    P Q  +++Q +     +  +A   Y+  
Sbjct: 117 AYPDVVVRYLTGERLFRLEYGEAHVAIRAGTVPDQPDNVVQ-EFRHHRVALFATKDYIAE 175

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P  ++    H  +   D          WL         P  S    +S     +  +
Sbjct: 176 YGRPNGVKSFGDHRFVAH-DAENNRAPFEQWLRQ-----NVPASSIRFRSSDTRAQREAI 229

Query: 237 L-GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L G+GI  LP +  +  P LV +  +    S  ++      L  T K++ F +F+   A+
Sbjct: 230 LEGAGIGFLPAFEARSRPELVEVHPEQEGWSGPLWLVTHVDLHRTTKVQTFLSFVKDAAQ 289

Query: 296 DW 297
           +W
Sbjct: 290 EW 291


>gi|307316823|ref|ZP_07596265.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306897445|gb|EFN28189.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 301

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 8/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R+F  V  SG F  AA+ LH+S  S++R ++ LE  +G +L  R  R L LT  G 
Sbjct: 4   WQAMRIFVQVVESGGFAPAAKVLHMSPPSVTRAVAKLEDLIGTRLLVRTTRSLKLTAAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  ++   +     S   P+G L +      G+  +   + +FL  YP +Q+
Sbjct: 64  GYVADCRRILGEIAEAEANAAGSFTAPAGLLTVTAPALFGRIHVLPVILDFLDHYPAMQV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + I  ++  ++  +  D AIR+   + +S L+ R++ ++      +P Y     +P S Q
Sbjct: 124 KTIFVDRVTNLVDEGLDVAIRIAS-LPASGLVARRIGSVRQVLCGSPDYFARFGDPGSPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H +I    L       F     +  PI  PR+ C   N+  +++   V G G++  
Sbjct: 183 ELARHRIIGREGLFGHSEWLFGRDNNIRVPI-SPRLIC---NTNDAVLAAAVAGWGLSRF 238

Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y V  + +  R   ++ D       ++  + E    + +++AF +F
Sbjct: 239 QSYQVAPDVSAGRLKVVLADYEREPVPIHIVHAEGRMVSARVRAFVDF 286


>gi|239820854|ref|YP_002948039.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805707|gb|ACS22773.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 293

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 10/246 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L  F +VA +G    A+     S++++SR+I+ LE ++G++L  R ARGL LTE 
Sbjct: 1   MDLNALTDFALVAANGGLGKASRASGRSKATLSRRIADLEEQLGVRLIERSARGLKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T    H++       +E    P G+LRIA+ +   Q  +     EF   YP++
Sbjct: 61  GQMLMDRTEGPMHEVADAMTSAREGLSVPRGRLRIASPVLFSQLAMGRIGAEFCAAYPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             +++ D++ +D+  +  D AIR+  P   SSL+ R      +   AAP         + 
Sbjct: 121 SCEVVADDRLVDLVEEQFDAAIRI-NPSPDSSLVGRCFAKDRLVVVAAPS--------VP 171

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +  K  +     ++    +  NW     R + EP +  L+++S+L I    V G+G A
Sbjct: 172 MPKRGKGKVSAVPGVVATTFQGGNWTLDDGRLVVEP-VPRLRLSSFLMIRDAAVAGAGAA 230

Query: 243 LLPDYI 248
           L+P  I
Sbjct: 231 LIPQSI 236


>gi|118591289|ref|ZP_01548687.1| LysR family transcriptional regulatory protein [Stappia aggregata
           IAM 12614]
 gi|118435961|gb|EAV42604.1| LysR family transcriptional regulatory protein [Stappia aggregata
           IAM 12614]
          Length = 301

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 130/294 (44%), Gaps = 9/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L+   +V   GS   AA  L L  S++SR +S +E E+G +LF R  R L+LTE 
Sbjct: 1   MDLQALKTILLVRDLGSLAAAARALDLDASNVSRTVSSVERELGQRLFQRSTRKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +  + +  ++E    ++   S +P G LR+  ++      +   L +F  LYPDI
Sbjct: 61  GEAYLQRVAPLVEEIEAANEDIAARSRQPRGILRMTASVAFVLEGIVPLLPKFQELYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L   + ++D+  +  D AIRL        LI  KL+       A+P YL     P +
Sbjct: 121 SIELFPSDSNLDLLAEGLDLAIRL-AAAPKGDLISTKLLQTRYRVVASPGYLSGEGHPEA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L   N + F   +P     + +    D P          + S L++ +   LG G A
Sbjct: 180 PGDLSVRNCLCFA--LPDFRNAWRFRLGDDAPFDVDVSGRTTIASALALREAARLGLGPA 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG-KLKAFRNFIFLKAR 295
           LL D+++ ++     + E  +   F  Y C P   +     L   R ++ LK R
Sbjct: 238 LLADWLIGND-----LKEGKLVDLFPAYACAPANFETAAWILYPSRAYLPLKVR 286


>gi|160876916|ref|YP_001556232.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160862438|gb|ABX50972.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315269120|gb|ADT95973.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 300

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 141/297 (47%), Gaps = 17/297 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG +  
Sbjct: 7   IRSFVEVANCGSFTKAAEHLDLSRLQVSRHIQEVEQWLSLRLLHRTTRSVSLTLQGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ ++P + IQL+
Sbjct: 67  QFCQRILSEVAAMESRAHSHNSELVGSIRIATPIGLGQHSLFDVVDRFIKIHPKVSIQLV 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +    +  +  D A+R   +P    +LI R+L+TI     AAP YL +   PL ++ +
Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARRLMTIDAVICAAPSYL-DSNTPL-VEPI 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           D   L+    LI    +  NW    +      +++  L+ N    ++   + G GI  LP
Sbjct: 183 D---LLAHNCLIHSAQQ--NWPFLKELQAEHVKVTGNLKANDMGVLVSAALRGHGIVRLP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +      +  L  ++ +  TP  T++  Y   L  + +    R FI   A+ W+ 
Sbjct: 238 CDLANQYLASGQLKEVLPNFTTPGQTLWAVY---LSRSYQQNLVRAFIDFTAQQWQL 291


>gi|15597157|ref|NP_250651.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9947959|gb|AAG05349.1|AE004622_11 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 311

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 142/301 (47%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E     + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMADQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +   R 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGRR- 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIM 232
            L   E D  +L   G +      D    AT+  P G       EPR   L V+ ++   
Sbjct: 180 -LEHPE-DLEDLPFLGAI----HNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVLRK 230

Query: 233 QYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  V G G+ LLP+ Y  ++  + +LVRI+     P  T+   Y   L  + ++ A R  
Sbjct: 231 KAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIRAL 287

Query: 290 I 290
           I
Sbjct: 288 I 288


>gi|327193925|gb|EGE60800.1| transcriptional regulator protein, LysR family [Rhizobium etli
           CNPAF512]
          Length = 297

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + V   V   GS + A+  L    +++SR+IS LE  +  KL  R  R +TLTE G  
Sbjct: 5   DAMSVLLAVVEHGSLSAASRHLRSPLATVSRKISELEAHLHAKLLQRSNRKITLTEAGRS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+  ++E  +         P G+L +   I  G+  +   + +FL  YP+I ++
Sbjct: 65  YVEAAREILDRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPEIDLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YL     P    +
Sbjct: 125 LMLGDRLSNLVEDHIDLALRIGT-LVDSNLIATRLGAIRRTVYASPDYLARNAPPRQPGD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ ITF ++        +W  +   R +  P  S L VN+  + +   V G GI  +
Sbjct: 184 LSAHDCITFENM----ASIRSWTFSDGKRDLAVPIRSRLAVNTAEAAVDAAVAGLGITRV 239

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y          LV ++ D   P   V+  YP       KL+A  +F   + R
Sbjct: 240 LSYQAARAETAGLLVPLLSDFEPPPAPVHLVYPSQGLVPLKLRALLDFATPRLR 293


>gi|293394768|ref|ZP_06639059.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422719|gb|EFE95957.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 300

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 139/294 (47%), Gaps = 16/294 (5%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D  D +R+F  V    SFT AA+ L L +S+++  I  LE  + ++L  R  R ++ 
Sbjct: 1   MAMDRIDAMRLFTRVVEQRSFTQAAQDLALPRSTVTDAIKQLEARLKVRLLQRTTRHVSP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G   ++    +   +E    E+  +  KP G LRI     L ++ L   L +FL  Y
Sbjct: 61  TLDGEAYYQRCLRILADIEDA--EMAFAGAKPRGLLRIDVHGTLARHFLLPGLPDFLARY 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI++ +   ++ ID   +  DC +R+ K ++ S ++ R +  +     A+P YL+    
Sbjct: 119 PDIELFMSEGDRLIDPLREGVDCVVRVGK-LKDSDMVARHIGALSETTCASPDYLQRFGV 177

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYC 235
           P S++ L  H +I F       +    +L  VD   G+PR     + L V+S  S++   
Sbjct: 178 PDSLEALANHRMIGFRSSATGSLMPLEFL--VD---GKPRSITLPTTLTVSSGDSMVAAA 232

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            LG GI  +P Y ++ +    +L+ ++         V   YP   + + +++ F
Sbjct: 233 RLGLGIIQVPHYHLQQDLARGSLLPLLAQYPPTPMPVSLLYPRNRQLSPRVRVF 286


>gi|254297865|ref|ZP_04965318.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157807869|gb|EDO85039.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 307

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 134/297 (45%), Gaps = 23/297 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE G +  
Sbjct: 1   MRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP++Q+ L 
Sbjct: 61  QRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPEVQVDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++    P   Q+L 
Sbjct: 121 LAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEQHGAPQRPQDLA 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIAL 243
            H  +  G + P    D  W   +  P GE  ++      +VN   ++      G GI +
Sbjct: 181 GH--VCLGMVAPGLYWD-EW--KLVGPQGEQSVTLAPPPFRVNVAEALATGIREGMGIGV 235

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y       N + VR+M +  +    +Y  Y           A R ++  K R W
Sbjct: 236 LPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 281


>gi|49084268|gb|AAT51187.1| PA2220 [synthetic construct]
          Length = 307

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 124/272 (45%), Gaps = 17/272 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VAR G+FT AA QL ++QS++S+ ISGLE  + I+L  R  R ++ T  G +L    
Sbjct: 12  FVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAGERLLNAI 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              + ++E    EL     KPSG +RI     + + LL   L   LL YPDI+++  ++ 
Sbjct: 72  GNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIKVEFDINY 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              DI  D  D  +RL   I    +       + M   AAP Y     +P S ++L  HN
Sbjct: 132 GFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRSPRDLVDHN 191

Query: 191 LITF-----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            I       G L       + W     DR +       L  N+  +I+   + G GIA L
Sbjct: 192 CINMRMQSGGGL-------YAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIARL 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           P+       +   L+R++E+   P F  Y+ Y
Sbjct: 245 PEEEFAPHIEEGRLLRVLEN-WCPLFPGYYLY 275


>gi|83749082|ref|ZP_00946088.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83724272|gb|EAP71444.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 330

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 140/302 (46%), Gaps = 32/302 (10%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE
Sbjct: 25  TMEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTE 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P+
Sbjct: 85  AGSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQYLTEPVCQALARFPN 144

Query: 122 IQIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +QIQ+ +  +  D ++  Y    + + + +  SSL+ R++V I    YAAP  L   R P
Sbjct: 145 LQIQVQISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAG-RAP 203

Query: 181 LSIQELDKHNLITFGDLIP-KCM---EDFNW---------LATVDRPIGEPRISCLQVNS 227
           L+          T  DL    C+   +D +W          A ++ PI +PR+  L  N+
Sbjct: 204 LA----------TPADLAGWPCLSGPDDASWGFRPAGAPAAAPLEVPI-QPRLQTL--NA 250

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            + + +  V G G+A +   +     +   LVR++ D       VY   P       K++
Sbjct: 251 EMRV-RAAVRGLGVARMARSVGDAEVETGRLVRVLSDYEPTPLRVYALMPARKLVPRKVR 309

Query: 285 AF 286
            F
Sbjct: 310 VF 311


>gi|330878634|gb|EGH12783.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 298

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 8   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +K +L  YP   + L++
Sbjct: 68  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVKAYLQRYPGTSVDLLI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P S QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGHCDSVVCASPAYLAMHGTPASPQELAA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K + +F        P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 187 HNCLTY-SYFGKSLWEFT---RQQSPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  L+ ++ D    +  ++  Y      +  L+   +F+
Sbjct: 243 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 287


>gi|307543958|ref|YP_003896437.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307215982|emb|CBV41252.1| putative transcriptional regulator [Halomonas elongata DSM 2581]
          Length = 302

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 102/190 (53%), Gaps = 1/190 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +GSF+ A  QL  + S++SR ++ LE  +G +L  R  R L L++ G ++
Sbjct: 12  EMAVFVKVVEAGSFSEAGRQLASTPSAVSRSVARLEKALGTRLLQRTTRKLRLSDSGKEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  + ++ +  +         S +P G +R++    +G+ ++  ++ EFL LYP++ +++
Sbjct: 72  YERSRDIVNAAQAVMEVSGRFSHEPQGLVRLSVPKAVGRFVIHPHIPEFLALYPEVNLEM 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ ID+  D  D AIR+        L+ R+L++I       PHYL     P   ++L
Sbjct: 132 RLDDRYIDLIDDQIDVAIRITDQ-PPPGLMGRRLLSIDHLLCTTPHYLAEHGTPAHPRDL 190

Query: 187 DKHNLITFGD 196
             H+ I  G+
Sbjct: 191 KHHSCIYLGE 200


>gi|229589237|ref|YP_002871356.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361103|emb|CAY47966.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 316

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 10/251 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    +  T  G  
Sbjct: 8   DQLGLFLDVLETGSFSAAARRHPLTPSAVARRIDSLESSVGSRLFQRSTHAVVPTPAGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L+  + E    S  P G +R+      G+  L   + +FL +YP + + 
Sbjct: 68  FAERARRIVSELQLARAEAVSLSHAPEGLIRVDAPAAFGRRHLAPVIADFLNVYPGLDVH 127

Query: 126 LILDNKDIDIS---MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+    +   D  +R    I  + LI   L +I   A A+P YLKN   PL 
Sbjct: 128 LHLIDSFVDMQGAHLGKVDLVLRAGH-IVDTRLIATPLASIVRIACASPAYLKNRGTPLH 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +EL +H+ + +  L P     F W   +D  R    P+   +  N+  +++   + G G
Sbjct: 187 PRELGEHDGLDWDGLAPM----FAWRFELDGRRATYRPQRIRMSANNAEALLSGALAGLG 242

Query: 241 IALLPDYIVKD 251
           IA LP ++  +
Sbjct: 243 IAHLPTWLASE 253


>gi|116253521|ref|YP_769359.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258169|emb|CAK09270.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 302

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 136/294 (46%), Gaps = 17/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +RVF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E  + E   +  KP G LR+     L ++ +  +L  FL  YPDI+ 
Sbjct: 64  AYYQRCLSILADIE--EAEGAFAGAKPKGMLRVDVHGTLARHFVLPSLPSFLETYPDIEF 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R+  P Q S ++ R++  +     A+P Y+    +P   +
Sbjct: 122 YMSEGDRLVDLVREGIDCVLRVGTP-QDSDMVARRVAMLDEVTLASPAYIARHGKPEHPE 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L  H ++ F     G L+P        +A +  P      + + VN+  S +    LG 
Sbjct: 181 RLAGHRMVGFRSSGTGSLLPLEFIVDGAVANIGIP------ATVAVNAAESYISAARLGL 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  +P Y  + +     LV+++ D       V   YP   + + +++ F +++
Sbjct: 235 GMIQIPRYHAEKDLAEGTLVQVLPDFPLTQTPVSLLYPRNRQLSPRVRVFIDWL 288


>gi|325522137|gb|EGD00794.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 321

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 136/299 (45%), Gaps = 13/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  +A +G+FT   ++L ++ + +SR I+ LE  +GI+L  R  R + LTE G 
Sbjct: 4   FQSMQVFVTLADAGTFTETGKRLDITTAQVSRMIATLENHLGIRLLNRTTRSMCLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      ++   ++ ++ E + + + P G+LR   +  +  + +   +  F   YPD+ +
Sbjct: 64  RYLARARDITLAVDASEREARGAQLHPYGRLRAHCSASIASHFVIPLVARFQARYPDVSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L  +  D+     D A+     + SS  +   +  I     AAP Y+     P +++
Sbjct: 124 DLTLAPQVPDLIRGSYDVAVIALPSLPSSDQVAIDVGRIDSVLCAAPAYVARHGMPDTLR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT----VDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            L +H  +    L+     +  W+ T     +    EP    +  +   S+      G+G
Sbjct: 184 ALARHRCV---QLVAPAYLEREWVLTNGLETETLAFEP---AMTADVAASLAVAVREGAG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I LLP ++V D+     L+R++ D  +    V+  +P       K +A+ +F+    RD
Sbjct: 238 IGLLPRFVVDDDLRSGALLRVLPDYRSEEIGVFLVHPSRRHVDAKTRAWVDFMKTALRD 296


>gi|325168392|ref|YP_004280182.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064115|gb|ADY67804.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 302

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 137/290 (47%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ +R F  VAR+ S T  A +L +SQS++SR+I  LE  +G+ LF RH  G  LT++
Sbjct: 1   MDWNDVRYFLTVARTASLTQTASELKVSQSTVSRRIVELEENLGVALFQRHQTGYFLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++ R    V   +   +         P G +R+AT+ +L  +L+   L  F   YP I
Sbjct: 61  GREVLRHAETVEDSILALERGAAGLEKDPQGVVRLATSENLATDLIIPALPAFRERYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP-L 181
            +++I      ++    AD A+R+ +P +  +L+ R +  +    Y +  YL   R P +
Sbjct: 121 CLEIITSTVAAELGRREADIALRVVRPTR-GNLMVRSVGHMTYSVYGSRDYLD--RHPYV 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSG 240
             + L   + IT+ D     M    WL         P    + V S L S +     G G
Sbjct: 178 EGEPLGGRHFITWDD-SHAFMPAAAWLKR-----EHPGCKIVLVTSSLPSQIAAVRAGLG 231

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A++PD++   + +L+ ++      S  V+      L  + +++A  +F+
Sbjct: 232 LAVIPDFLAVGD-DLLPVIPSERMFSNKVWLVTHADLVASARVRAVGDFL 280


>gi|315123380|ref|YP_004065386.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315017140|gb|ADT70477.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 312

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 133/272 (48%), Gaps = 6/272 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +   V   GSF  AAE  ++ +S IS+QIS LE E+G++L  R  R  +LT  G+++
Sbjct: 6   RLLMLLEVVEQGSFAKAAEIRNIDRSVISKQISRLEDELGVRLLNRTTRSFSLTAAGAEM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   E+   L  T    +    +P G L++  +  +G+  LQ  + +F   +P ++++L
Sbjct: 66  IKKAGELRSLLGETVRMAENYHQEPRGVLKVTASTLIGRRYLQPVINDFQKRFPQVEVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +DI  +  D A R+ +P + SSLI RK+    +   AAP +++    P++I +L
Sbjct: 126 RLDDRLVDIVSEGFDLAFRVGEP-KDSSLIARKIARNRLLLLAAPAFIETYGMPITITDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +    ++     +  E  N+         +   S  + N    ++   + G+   L P 
Sbjct: 185 AQLPAASYASNSLRV-EGINYYNHTGEHCEQKIKSVFRANDAEVLLMKTLSGTTYFLAPA 243

Query: 247 YIVKD---NPNLVRIMEDV-ITPSFTVYFCYP 274
           +I+     +  LV ++ DV +     +Y  YP
Sbjct: 244 FILDKEVIDGQLVPLLTDVKLMEHSAMYAVYP 275


>gi|238760469|ref|ZP_04621606.1| Glycine cleavage system transcriptional activator [Yersinia aldovae
           ATCC 35236]
 gi|238701311|gb|EEP93891.1| Glycine cleavage system transcriptional activator [Yersinia aldovae
           ATCC 35236]
          Length = 305

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 132/299 (44%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSSFNAAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    S L   +L    +    AP  L           
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWSGLRTERLYAEFLLPVCAPSLL----------- 174

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238
           + +H L    DL    +       +W+A   R +G P+I+  Q    +    ++Q  V G
Sbjct: 175 MGEHGLKVPADLANHTLLHDTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHG 233

Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIAL+ + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 234 QGIALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|153837397|ref|ZP_01990064.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149749312|gb|EDM60091.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 295

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 15/279 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVQSYIRVIEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQL--ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           I +QL   L  +  ++S+D      R  + + S S     L       YAAP YL+    
Sbjct: 121 ITLQLTTTLPGQLPELSLDL--FISRHLEQLNSLSFKATPLFEHKAQFYAAPSYLEKYGA 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +++EL KHN++ +G+   + ++        +R             +  ++      G 
Sbjct: 179 PQNVEELTKHNILIWGEKPAREIK-------TNRGKRVSLSGNFATTNPEALFHGAKRGM 231

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           GI +  + ++KD+     LV I+ DV     TVY  YP+
Sbjct: 232 GILMTNNVMIKDDLKSGALVPILPDVTADEATVYAYYPK 270


>gi|254472259|ref|ZP_05085659.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211958542|gb|EEA93742.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 321

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 141/286 (49%), Gaps = 9/286 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  + F  VAR+G+ + AA +L +  +++SR+I  LE  + I LF RH  G  LTE G 
Sbjct: 24  WDDTKAFLAVARTGTLSAAAHRLSIGVATLSRKIDRLEETLKIPLFIRHQSGYQLTEDG- 82

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     +E      T      ++    SGKLR+AT  +L  +L+   L EF   YP++ I
Sbjct: 83  RDLLAKAEALEAAATAFASGAKAQAGISGKLRLATAENLATHLILPALPEFRAHYPELHI 142

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++ D   +++    AD AIR+ KP +S ++  R+L T+    YA+  Y     +    +
Sbjct: 143 EILTDVSSVNLHRRDADLAIRMVKP-ESGNVTLRRLGTLGFGLYASKDYALKRAKWTDQE 201

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             ++ + I++ + +   + +  W   ++R + + R   +  +S  + +     G G+A+L
Sbjct: 202 NYEQDDFISWCEALSHLV-NAKW---IERAL-KGRQPAVLTSSLATQVAATQAGLGLAVL 256

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++  D   LV +  D+      +Y      L ++ +++   +F+
Sbjct: 257 PHFLASD-AGLVCMNADIGVEQ-PIYLVMHSDLAHSPRMRVMADFL 300


>gi|167842349|ref|ZP_02469033.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 294

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 132/290 (45%), Gaps = 17/290 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  VAR G+ + AA  L +  +++ R+++ LETE+ ++L  R  R   LT  
Sbjct: 2   FDWENLRHFLAVARVGTLSGAARALGVDHATVGRRVTMLETELQVRLVERFPRHCALTGA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++  + S +       +  +Q    + +G + ++    L  N        F   YP I
Sbjct: 62  GRRIFEIASAMEAGAFAIERTIQAERSQLAGAVVVSAPPVLVTNFFAKATTAFRERYPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L    + + +S   AD A+RL +P ++ +++ R++  +    YAA  Y      P  
Sbjct: 122 QLALSGQAQSVSLSRREADVAVRLVRPKEAGNVV-RRIGAMEFALYAARRY------PY- 173

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +QE  +   + + D     M    WL  +    G+  I+C ++    S       G+GI 
Sbjct: 174 LQEPARWEFVGYDDQFDD-MPQQRWLKKI---AGKRAIAC-RLGDITSQYAATRAGAGIG 228

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFI 290
           +LP ++     +LV +  DV    F   ++      LK +  ++A  +FI
Sbjct: 229 MLPRFLPAAGDDLVEL--DVDAEPFVRDIWLVVHRQLKASPPIRAVMDFI 276


>gi|293392435|ref|ZP_06636757.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291425089|gb|EFE98296.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 299

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 126/287 (43%), Gaps = 6/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VA   SFT AA +L +SQS++S  I GLE  + ++L  R  R + LTE G
Sbjct: 5   NFNDLLSFLMVAEERSFTRAAARLGVSQSALSHAIRGLEERLDLRLLTRTTRSVALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++E   + L +    P+G +R+        ++L   L  FL  YPDI 
Sbjct: 65  ERLVNAIGAHISEIEHQLVALGDMRATPAGNIRLTAGEHAIHSVLWPVLNPFLQRYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I DN   DI     D  IRL + +    +       +   A  +P Y     +P + 
Sbjct: 125 VEVIADNSLTDIVSGRFDAGIRLGEQLAKDMVAIPIGPQLRFVAVGSPDYFAKHGQPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q L +H  IT    +P     + W    D      R+   L +NS    +     G GIA
Sbjct: 185 QALQRHRCITM--RLPTQGGLYAWEFEKDGRTVNVRVDGQLTINSLPQRIDAARSGLGIA 242

Query: 243 LLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P D +  D  N  L+ +++D   P    Y  YP   ++T     F
Sbjct: 243 FVPEDTVAADIANGQLLNVLDDWCAPFPGYYLYYPSRRQHTTAFSLF 289


>gi|283788349|ref|YP_003368214.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282951803|emb|CBG91513.1| putative LysR-family transcriptional regulator [Citrobacter
           rodentium ICC168]
          Length = 308

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 142/296 (47%), Gaps = 26/296 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +   G  + AA QL++S S++S+ ++ +E  +G  L  R  R +TLT+ G  L 
Sbjct: 10  LEFFVRIVDCGGLSEAASQLNVSPSAVSKSLAAMEESLGTTLIKRTTRSITLTDAGQYLF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++ H+ +            P G+LRI  +I  G + L   + ++   +PD+ + + 
Sbjct: 70  NRANKLLHEFDEALNTTSGYYHNPQGELRITCSIAFGYSRLVNLVDKYRSQFPDVNLYID 129

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L++  ++++    D A+R+   P Q+ ++  RKLV I     A+P YL     PL   +L
Sbjct: 130 LNDNFVNLNDTDFDIALRISTAPPQNYAM--RKLVPIRWAYCASPGYLAKKGMPLRRADL 187

Query: 187 DKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             H+ + +  L P  K  ++ + L  +  P      + +Q NS L +++  +   G+A L
Sbjct: 188 VNHDCLIYPGLTPVIKVADEQDRLHQLKLP------APIQANSSLVLLKSVLEDQGVAYL 241

Query: 245 PDYIVKDNPNLVRIMEDVITP----------SFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y++ D+     I +  ITP          +  +Y  Y  +  +  K+++F +F+
Sbjct: 242 PTYLIGDH-----IQKQEITPLMLDGMMSCETHALYALYFPSKYSNPKVRSFIDFL 292


>gi|153002195|ref|YP_001367876.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151366813|gb|ABS09813.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 300

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 140/297 (47%), Gaps = 17/297 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG +  
Sbjct: 7   IRSFVEVANCGSFTKAAEHLDLSRLQVSRHIQEVEQWLSLRLLHRTTRSVSLTLQGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ ++P + IQL+
Sbjct: 67  QFCQRILSEVAAMESRAHSHNSELVGSIRIATPIGLGQHSLFDVVDRFIKIHPKVSIQLV 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +    +  +  D A+R   +P    +LI R+L+TI     AAP YL +   PL ++ +
Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARRLMTIDAVICAAPSYL-DSNTPL-VEPI 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           D   L+    LI    +  NW    +      +++  L+ N    ++   + G GI  LP
Sbjct: 183 D---LLAHNCLIHSAQQ--NWPFLKELQAEHVKVTGNLKANDMGVLVSAALRGHGIVRLP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +      +  L  ++ D  TP  T+   Y   L  + +    R FI   A+ W+ 
Sbjct: 238 CDLANQYLASGQLKEVLPDFTTPGQTLCAVY---LSRSYQQNLVRAFIDFTAQQWQL 291


>gi|187919672|ref|YP_001888703.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718110|gb|ACD19333.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 297

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 142/302 (47%), Gaps = 35/302 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L L+Q ++SRQI  LE      LF RHA+GLTLT +G  
Sbjct: 8   NALQIFETVARHRSFTRAADHLCLTQGAVSRQIIALEDYYKFPLFKRHAKGLTLTAEGEL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E + ++E  +I L+ +  +    L++ T +      +   +  F   YP++ +Q
Sbjct: 68  LLPAVKESFARIE--EISLRLTRQRTDLALKVPTCV---MRWMLPKIMRFQAEYPELHVQ 122

Query: 126 LILD-NKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +      D+D  ++  D AI         +Q+  L + +L  +      AP  LK+  +P
Sbjct: 123 ITTTWQHDVDFQLEPFDAAIIYGSSPGAGVQAVPLFEERLTPV-----CAPDLLKD--KP 175

Query: 181 LS-IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGE----------PRISCLQVNSY 228
           L+ + +L +H L+       +   D+  WLA V                P    L + + 
Sbjct: 176 LAEVADLARHTLLH----PTRDHRDWKMWLAKVTEIDAANAAAIDAEHGPSFDTLDMATN 231

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            ++  + V  S +AL+ + +      LVR  + V+   +  YF YP+++ +  KL  FR+
Sbjct: 232 AALQGFGVAISDLALIDEDVAAK--RLVRPFDTVLKTGWRYYFVYPDSVAHQQKLNLFRD 289

Query: 289 FI 290
           +I
Sbjct: 290 WI 291


>gi|238752486|ref|ZP_04613961.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia rohdei
           ATCC 43380]
 gi|238709249|gb|EEQ01492.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia rohdei
           ATCC 43380]
          Length = 297

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 135/286 (47%), Gaps = 12/286 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68
           VF  +   GS   AA+ L +S++ ++R ++ +E   G +L +R  R L+LT  G + L R
Sbjct: 9   VFVAIVERGSMIGAADALEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTHAGEATLER 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   IE QE+  +  G LRI+ +  LGQ+ L   + E+L  YP + + L +
Sbjct: 69  CRRMLEFAQDMDLIEGQEND-ELRGLLRISCSQSLGQSALVIAVTEYLRRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L T H    AAP YL     P +  +L  
Sbjct: 128 NNRAVNLVEERIDLALRITNEL-DPNLIARPLATCHSVVCAAPAYLLAKGTPKTPSDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           HN +T+     K +  F+         +G      L  N  + ++   + G+GI L P Y
Sbjct: 187 HNCLTY-SYFGKSLWHFDQQGVQSSVAVG----GNLSANESVVLLSGALEGAGITLQPSY 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               +     L++++ D    +  +Y  Y    +  G L+A  +++
Sbjct: 242 SAAPHIARGELIKLLPDYQPQAMGIYGIYTSRRQMPGTLRAMLDYL 287


>gi|238026362|ref|YP_002910593.1| putative LysR family transcriptional regulator [Burkholderia glumae
           BGR1]
 gi|237875556|gb|ACR27889.1| Putative LysR-family transcriptional regulator [Burkholderia glumae
           BGR1]
          Length = 324

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 129/292 (44%), Gaps = 22/292 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G++  
Sbjct: 7   MRVFVCVAELQSFRQAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGTRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  +  +P G LRIA +  L    L   +  F   YP +++QL 
Sbjct: 67  DGCRALLEEFDHLEASVAHTIREPVGTLRIAVSGALSPQRLTPLVDGFRRQYPKVRVQLT 126

Query: 128 LDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +  ID +   Y    +  R+     +L+   L      A A+P Y++   EP    EL
Sbjct: 127 IADGPIDGLDTSYDAAIVAGRRIDDGPALVSHALAPDPFVAIASPAYIEQRGEPHRPDEL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-------QVNSYLSIMQYCVLGS 239
            +H  IT    +P     F W     R +   R + L        +N    +    + GS
Sbjct: 187 ARHAAIT----LPLDTHGFAW-----RFVDAGRFAHLVTLQPSYTINDAWLVRAAVMAGS 237

Query: 240 GIALLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           GIA+LP+  V D      LVR++ D  +  P   +   YP       + ++F
Sbjct: 238 GIAILPESFVADAISRGELVRLLADYRIDDPDAQLAVVYPNRQFVPARTRSF 289


>gi|167616239|ref|ZP_02384874.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142810|ref|ZP_05591072.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 305

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V ++GSFT AA  L + ++++SR++  LE ++G++L +R  R L LT
Sbjct: 1   MAADPNDTLIFVRVVQAGSFTAAARLLRMPKTTVSRRVMTLEAQLGVQLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  +     +  +L+     + +    P G LR+      G   +   L  F   YP
Sbjct: 61  EAGSLYYSHCRNMAAQLDEAHAAVSQLQSGPRGWLRVTLPYSFGTTWIAPLLAGFRQAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++++++  +  +D+  D  D A+RL   +  S L+ R+L +     YA+P YL     P
Sbjct: 121 DVRLEILASHVPLDLVADEIDIALRL-GVLADSDLVARRLGSFATGVYASPSYLMRHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCV- 236
               EL  H  +T    + +      +   + +P G  +   L    V S  +++   + 
Sbjct: 180 EHPGELGAHRALT----LHQARRAVGYAWPLRKPGGRAQYFALDPVIVASDPALIHDALC 235

Query: 237 LGSGIAL-LPDYIVKDNP--NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+ L +   +  D+    + R++ D   P+      +P     + K++AF +++
Sbjct: 236 AGEGLTLAMHQSMAADHEAGRVRRVLSDWSGPAQDFNALFPRGRVASPKVRAFVDYL 292


>gi|107024353|ref|YP_622680.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116688321|ref|YP_833944.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105894542|gb|ABF77707.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116646410|gb|ABK07051.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 325

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 125/249 (50%), Gaps = 8/249 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  + + L +F     +GS + AA +L L +S++S++++ LE  +G +L +R +R   LT
Sbjct: 21  LEMNLNDLYLFVQAVEAGSMSAAARRLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLT 80

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G++          + ++ +  +   + +P+G +RI +++ + Q++L   L    + +P
Sbjct: 81  PVGAEFFEHARAAVIEADSARDAVLRQAAEPAGVVRITSSVPVAQHILAPCLPALAIAHP 140

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + +Q+   ++ +DI+ +  D A+R    P+  S+L+QR L    +   AAP YL     
Sbjct: 141 KLLLQIHASDRLVDIAQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPAYLARAGT 200

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H+ +  G   P+          VD     PR+  LQ +    ++Q    G 
Sbjct: 201 PDTPADLAQHDGLHPG---PQPWRLQRRGDAVDV---TPRLR-LQADESTLLLQAATAGL 253

Query: 240 GIALLPDYI 248
           G+A LPD+I
Sbjct: 254 GLACLPDWI 262


>gi|120613089|ref|YP_972767.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120591553|gb|ABM34993.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 302

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 124/301 (41%), Gaps = 19/301 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRV    AR GS T AA  L ++ ++ S  +  LE +VG++LF R  R L +T QG  L 
Sbjct: 9   LRVLVEAARGGSLTAAARALDVTPAAASAMLKRLEAQVGVRLFERSTRALRITAQGGTLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L+      Q  +    G +R+A   DL + LL   L  F+  +P +Q+ L 
Sbjct: 69  EYAERALELLDEGAGLAQSETGALRGTVRLAAPTDLSRVLLP-RLDRFMERHPGVQLALS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D+  D  D A+R    +  S L+ R L      A AAP YL     P    EL 
Sbjct: 128 ASDRLHDVRRDAVDLALRYSAELPDSQLVARALHHTRRIACAAPEYLARHGTPRHPSELA 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-------LQVNSYLSIMQYCVLGSG 240
            H  I    +      +  W  T +R  G P  +          V+       + + G G
Sbjct: 188 THRCIA---MAIAGRREVRW--TFERAPGHPPETVGITLRADRSVDDGALAHAWALAGGG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I       V+   D+  LV ++   +  ++TVY   P       +++A   F+   A +W
Sbjct: 243 IVYKSRLDVQAHLDSGQLVELLPGWLGQAYTVYAVLPSQRFVPARVRALVEFL---AEEW 299

Query: 298 K 298
           +
Sbjct: 300 R 300


>gi|330982159|gb|EGH80262.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 306

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 118/246 (47%), Gaps = 4/246 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAAESLHMPRASVTVLIKQLEAHLGVQLLQRTTRQVSATPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL     PL++Q
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLAQHGTPLNLQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL +H +I +            ++A  D    E   +C + VNS    +  C  G G+  
Sbjct: 183 ELAQHQVIEYFSTSTGKRYGLEFMA--DGMGVEHASACSIAVNSADGYVAGCEAGFGLIQ 240

Query: 244 LPDYIV 249
           +P Y V
Sbjct: 241 VPRYHV 246


>gi|237729614|ref|ZP_04560095.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226908220|gb|EEH94138.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 298

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 129/294 (43%), Gaps = 24/294 (8%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V  SGSFT AA +L +S   + + I+ LE ++G +L  R+ R  +LT+ 
Sbjct: 2   DKLRGMETFVAVVESGSFTSAATRLEMSAVMVGKYINQLEAQLGTRLLERNTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         V  ++   +  ++   + P+G LRI+     G  ++      FL  +P++
Sbjct: 62  GRVYFEEARRVLEQVSIAERSVERLRLAPAGTLRISAPTSFGACVISPLAAAFLQTWPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L L N+ +D+  +  D AIR+   I  + ++ + L    M   A+P YL     P +
Sbjct: 122 RIELDLTNRMVDLVNEGVDLAIRI-GDIHQTDVVAKYLCPYRMAICASPDYLARHGTPRT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYC 235
             +L  H           C+    W       L  V   +   R + L+ N    +    
Sbjct: 181 PADLVDH----------LCLSHTVWTARNEWILPGVTGEVRWKRDAILRCNDGHGLRMAA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           V G+G+ L P+ ++        L+RI+E        ++  + + L+   KL  F
Sbjct: 231 VAGAGLLLQPEVLLAQELATGKLIRILEGFTPQPRPIHLLWRQDLRPLPKLTRF 284


>gi|222110252|ref|YP_002552516.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221729696|gb|ACM32516.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 304

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 142/295 (48%), Gaps = 22/295 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F ++AR  S +  A +L +S ++ S++++ +E+ +G++L  R  R L LT +G+  
Sbjct: 10  EMAFFSLLARWASLSATARELGISTAAASKRLAQMESRLGVQLVSRTTRRLHLTAEGNTY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +  +++  +  + +   +P G LR+  T+  G++ +   +  F+  +P IQ+QL
Sbjct: 70  LRHARRILAEIDAMEQLVSDMQAEPQGLLRVNATLGFGRSHIAPLVPAFVRRHPQIQLQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +   ++ D  D  IR  +P   + +I R+L        AAP YL     P    EL
Sbjct: 130 QLSVQPPPLADDGFDVCIRFGEP-PDARVIARRLAPNRRLLCAAPAYLARRGTPTRPAEL 188

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238
            +H+ I    GD     +  FN         G  +   +++ ++LS       + + + G
Sbjct: 189 PQHDCIDIRQGDDA-HGVWRFN---------GHRKQETVRLRNHLSTNDGEIAVNWALAG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI +  ++ +     +  LV+++ D  TP   ++  YP+    T ++KAF +F+
Sbjct: 239 MGIVMRAEWDIARYLRSGRLVQVLRDYDTPPADIHAVYPQRHAATARVKAFVDFV 293


>gi|190572638|ref|YP_001970483.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190010560|emb|CAQ44169.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 309

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 136/289 (47%), Gaps = 14/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VA  GS T AAE L +S++ +SR ++ +E  +G +L +R  R ++LT  G    
Sbjct: 7   MTVFVEVAERGSLTAAAEVLDMSRAMVSRYLAEVEAWLGARLLHRTTRRVSLTGPGEAAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E  Q EL     +P G LR+  ++  GQ+ L   +  F+  +P  +I+L+
Sbjct: 67  ARFRQMLAIGEELQGELASDDPEPHGTLRVTASVSFGQSHLARAVAAFVARHPAARIELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D A+R+ + I   SLI R+L T      A P YL+    P + + L 
Sbjct: 127 LVDRMVNLVEERVDLAVRIARQID-PSLIARRLATCRSVLCATPSYLQARGTPTAPEHLA 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            HN +T    G  + +   D   L+     +G      +  N    +++    G+GIA+L
Sbjct: 186 AHNCLTHHYVGKSLWQLHRDGRSLSVA---VG----GNISANEASLLLEAVRAGAGIAML 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y V     +  L+ ++ +       ++  Y    +    ++ F +F+
Sbjct: 239 PTYQVAPLLRSGELIELLPEFSLDELGIHAVYASRRQQPAIMRRFLDFL 287


>gi|167614911|ref|ZP_02383546.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 318

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 114/256 (44%), Gaps = 21/256 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA  LHL+QS+IS+QI  LE  +G  LF RHARGL LT +GS L+
Sbjct: 13  LRCFEAAGRLGSFTKAAGALHLTQSAISQQIRQLEARLGYPLFVRHARGLALTPKGSVLY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+  +  L  T  +L      P   L+++         L   L EF  L+P   ++L 
Sbjct: 73  EATATAFGSLGRTLRQLS----APDAPLQVSCLPSFALQWLMPRLSEFHRLHPQTPVRLR 128

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ID   +  D  D AIR   P    +L    L   ++ A AAP YL   R P    
Sbjct: 129 AEFHAIDRETMRADDIDVAIRW-DPFDYRALHVEPLFDEYLVAAAAPAYLG--RHPPRAT 185

Query: 185 E-------LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                   +  H+   + D  P+ +E   WL A V    GE R     + S    +   V
Sbjct: 186 AAKWISSVVPLHDASAWPD-APRYVEWRTWLDAVVPGYAGELRGPEFNLASL--AIGAAV 242

Query: 237 LGSGIALLPDYIVKDN 252
            G G+ +  + +V D 
Sbjct: 243 AGQGVVVCREALVNDE 258


>gi|330900283|gb|EGH31702.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 305

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 119/246 (48%), Gaps = 4/246 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL++Q
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQHGTPLNLQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL +H +I +            ++A  D    E   +C + VNS    +  C  G G+  
Sbjct: 183 ELVQHQVIEYFSTSTGKRYGLEFMA--DGMGVEHASACSIAVNSADGYVAACEAGFGLIQ 240

Query: 244 LPDYIV 249
           +P Y V
Sbjct: 241 VPRYHV 246


>gi|311107999|ref|YP_003980852.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310762688|gb|ADP18137.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           158 [Achromobacter xylosoxidans A8]
          Length = 296

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 130/289 (44%), Gaps = 9/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD  R+F  + R G+   AA  L + Q++  R+++ LE  +  +LF R   G   T  
Sbjct: 8   MDWDNARIFLAIYRVGTLRGAAALLQVDQATAGRRLAALEASLDARLFLRTPGGYVPTAA 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    +  Q ++Q    + SG +R+AT+  +    +   ++     +PDI
Sbjct: 68  GELAFAAAERMEQAADQLQRQMQGLDHRLSGVVRVATSETVATYYVMEAVRRVHAHHPDI 127

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    +  +++   AD AIR  +P  +  LI R L    +  YA+  YL+   EP  
Sbjct: 128 RVTLSTAIQLSNLTRREADLAIRNIRP-DNPDLIHRHLARKEVGLYASKAYLEAHGEPRL 186

Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                 H L+T+   ++P   + F        P G  R+  +++NS L I++    G GI
Sbjct: 187 GTAFAGHTLVTYQQAVLPGWSDTF-----CGEPTGNGRMG-VELNSGLMIIEAVAAGLGI 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P ++    P+LVRI      P + ++      L  T +++A  + I
Sbjct: 241 GQVPTHMAPQYPDLVRIWPARSEP-YDLWLVMHGDLNRTARVRAVADAI 288


>gi|269961848|ref|ZP_06176205.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833426|gb|EEZ87528.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 304

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 136/289 (47%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  +A + + + A ++L LS +  S  I+ LE  +G++L +R  R ++LTE+G  
Sbjct: 4   EHLKLFVRLASTHNISMAGQELGLSPAVASAHINKLEEGLGVRLVHRTTRKVSLTEEGQA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   +E  +  +      P+G LR+      G+  L   LK F+  YP++ + 
Sbjct: 64  FLPHAEEVLATVEAARGAVGVGHSAPTGTLRVTAPASFGRLHLVPALKGFMAAYPELTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               +  ID+     D AIRL + ++ S+L+ RKL        A+P YL+    P + QE
Sbjct: 124 FRFSDSIIDMVEGGFDVAIRLAE-LKDSTLVARKLAPDRRIIVASPEYLEKHGTPKTPQE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  +T   L        NW+  T D           + ++  ++   C+ G G+++ 
Sbjct: 183 LAEHECVTLMGLD-------NWVFETPDGHYAMRASGSFRTDNGDAMRDACIDGLGVSIN 235

Query: 245 PDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289
             + V        LV I+ED  +  + +++  YP +     K++AF ++
Sbjct: 236 SIWSVYKQLQAGELVEILEDYPLVMNASIWAVYPSSRLIAPKVRAFIDY 284


>gi|167836875|ref|ZP_02463758.1| transcriptional regulator [Burkholderia thailandensis MSMB43]
          Length = 313

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFARVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP++Q+ L
Sbjct: 66  LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRKRYPEVQVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++    P   Q+L
Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEAHGAPQRPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             H  +  G + P    D  W   +  P GE  ++      +VN   ++      G GI 
Sbjct: 186 ASH--VCLGMVAPGLYWD-EW--KLMGPHGEESVTLAPPPFRVNVAEALAAGIREGMGIG 240

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y       N + VR+M +  +    +Y  Y           A R ++  K R W
Sbjct: 241 VLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287


>gi|28898450|ref|NP_798055.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836252|ref|ZP_01988919.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308094384|ref|ZP_05888966.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308095116|ref|ZP_05903524.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308125828|ref|ZP_05777677.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|308126327|ref|ZP_05909356.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28806667|dbj|BAC59939.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750527|gb|EDM61272.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308086042|gb|EFO35737.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308093612|gb|EFO43307.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308110683|gb|EFO48223.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308111607|gb|EFO49147.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 305

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 142/289 (49%), Gaps = 7/289 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VAR  SFT AA ++ ++++++S+ + GLE ++ ++L  R  R ++LTE+G +L    
Sbjct: 14  FAHVARHRSFTKAASEMGVTRAALSQHVKGLEKQLQVRLLNRTTRNMSLTEEGQRLLDTL 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 +E T   L +  ++P+G +RI+ +    + L++ +L EFL  YP I+++LI+D+
Sbjct: 74  HPSLSNIEQTLNSLNDLHIEPAGLIRISVSRTAARLLIEPHLGEFLSRYPKIRLELIMDD 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              +I  +  D  IRL   +    +       +      +P Y K   +P +  +L+ HN
Sbjct: 134 GLTNIVAEGMDAGIRLGVSLDEHMVAIPITPNLTNAIVGSPDYFKRYGKPETPNDLEHHN 193

Query: 191 LITFGDLIPKCMEDFNWLAT-VDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
            + +       ++ ++  +  VD+   I EP+ + +  + Y S++Q  + G G+    D 
Sbjct: 194 CLAYRFTSSGTLDHWSLTSPDVDKHTVIFEPKGNAVFNDDY-SMLQAAMQGVGLIKHIDL 252

Query: 247 YIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +++K  +   L R+  D   P    Y   P       K++   +F+  K
Sbjct: 253 WVLKYLEEGKLERVFVDWCKPFPGFYLYIPSRENMPKKIRVLMDFLIEK 301


>gi|331014330|gb|EGH94386.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 305

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFAKAAESLHIPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP +++
Sbjct: 64  AYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFARRYPQVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL ++
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQITCASREYLQQHGTPLQLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H +I +            ++     P  +  ++C + VNS    +  C  G G+  
Sbjct: 183 DLAHHQVIEYFSASTSKRYGLEFVGEGGAP--DHGLACSISVNSADGYVAACEAGFGLIQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y +     +  LV ++     P   +   YP   + + +++ F +++
Sbjct: 241 VPRYHIAGQLRSGTLVEVLRRHRPPPLALTALYPPHRQLSRRVRVFVDWL 290


>gi|224824574|ref|ZP_03697681.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603067|gb|EEG09243.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 294

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 13/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AAE+L LSQS+ISRQ+  LE  +G+KLF R  R + LT+ G + +
Sbjct: 13  LLVFESAARHESYTRAAEELSLSQSAISRQVQALEEHLGLKLFRREGRSVRLTDAGRRYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              SE   ++ +  ++   SS   +G LR+AT    G   L   L EF   +P + I + 
Sbjct: 73  LELSEALGRIRSATLQAM-SSQSGTGALRLATLPTFGSKWLLPRLHEFYASHPGVTIHIH 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               DID +    D AI +        ++  +L    + A   P  +++ ++ ++     
Sbjct: 132 SRIGDIDFNTSEIDAAITVGTG-DWPGMMAHRLYNEFLVAIVDPSGVEDGQD-IAPDWAM 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           K  L+T         E F+      R +   R+    ++ S+L  +Q    G GI L+P 
Sbjct: 190 KQTLLTVASNPQAWAEWFSHYHLDHRQM---RMGPSFELTSHL--IQAVRAGIGIGLVPQ 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            ++ D      L+ I E + +P  + Y  YP    +   L AFR+++ 
Sbjct: 245 ALIMDELQRKELITIGEAIASPR-SYYLVYPPRNASLPSLTAFRDWLL 291


>gi|242313760|ref|ZP_04812777.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254186299|ref|ZP_04892817.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254193850|ref|ZP_04900282.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254264379|ref|ZP_04955244.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|157933985|gb|EDO89655.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169650601|gb|EDS83294.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|242136999|gb|EES23402.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254215381|gb|EET04766.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 312

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 11  DRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++++
Sbjct: 71  FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178
           L       D+  D  D AIRL +  Q   L  R +   T  +   A+P     H +    
Sbjct: 131 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 190

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++  L +        +    + D +    V RP  +P +     +   +  Q    G
Sbjct: 191 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 247

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290
            G+ALLP+++V+D+     +++ +    F    VY  YP A     K++A+ +FI
Sbjct: 248 DGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 302


>gi|167905975|ref|ZP_02493180.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 336

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 66  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P +  +L
Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPCDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGTEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286


>gi|113867131|ref|YP_725620.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113525907|emb|CAJ92252.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 302

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 131/295 (44%), Gaps = 15/295 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F   AR  SFT AA +LH++Q ++S+Q+  LE  +G++LF R  + L LT  G + 
Sbjct: 10  ELQAFEAAARHNSFTVAARELHVTQGAVSKQVRSLEAYLGVELFQRVRQRLMLTTAGERY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                   ++LE   +EL     +  G L IA+   LG   L   L +F   +P+++++ 
Sbjct: 70  LERIGPSLNELEAATVELMARQGR-GGVLHIASMPTLGAKWLIPRLPQFFARHPEVKLEF 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQ----RKLVTIHMHAYAAPHYLKNCREPLS 182
           +   +  D S    D AIR    +   SL      R+++ +      A         P +
Sbjct: 129 VPHAQGYDFSEPDLDAAIRFGDGVWPGSLADYMTGREVLPVCRPGLLASEPGGVAPTPAA 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +      +  T    +P+   D  W AT+  P  E   S  + + +  + Q  + G GIA
Sbjct: 189 LLRYPLLHHTT----VPEAWPD--WFATLGVPTRE-AWSGARFDQFSLLTQAALSGLGIA 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+P  ++++      LV      +      Y CYPE  ++   L+ FR ++   A
Sbjct: 242 LIPRCLIEEELATGALVVAHPAQVLAKKGYYLCYPEQKQHLPALRTFRAWVMEGA 296


>gi|28869938|ref|NP_792557.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853183|gb|AAO56252.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 305

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFAKAAESLHIPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP +++
Sbjct: 64  AYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFTRRYPQVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL ++
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQITCASREYLQQHGTPLQLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H +I +            ++     P  +  ++C + VNS    +  C  G G+  
Sbjct: 183 DLAHHQVIEYFSASTSKRYGLEFVGEGGAP--DHGLACSISVNSADGYVAACEAGFGLIQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y +     +  LV ++     P   +   YP   + + +++ F +++
Sbjct: 241 VPRYHIAGQLRSGTLVEVLRRHRPPPLALTALYPPHRQLSRRVRVFVDWL 290


>gi|328469471|gb|EGF40417.1| putative transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 318

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 127/291 (43%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R + LTE G +  
Sbjct: 7   LRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTEAGRRYA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +L   +  L+  +   SG L+I   +  G+  ++  LKEF   YP I I + 
Sbjct: 67  NTARFVLDELAACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPSITIDIH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+  +DI     D +IR    +Q S LI R+L  I      +  YL     P      +
Sbjct: 127 YDDAYVDIIEQGIDVSIR-SGVVQDSQLIMRQLSPIDFIICGSQDYLTRHGVPSGPDAFN 185

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+ + F     G L+P  M + +  +  +     P  + + VN   S+ + C  G G+ 
Sbjct: 186 DHSWVRFRFKQTGKLLPIRMPEPDGTSEYN-----PERNFI-VNDGESMAELCAEGLGLT 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P +I +D      LV I   +      VY  Y        +++ F +FI
Sbjct: 240 QIPHFIARDWLKAGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFI 290


>gi|315297457|gb|EFU56736.1| transcriptional regulator, LysR family [Escherichia coli MS 16-3]
          Length = 302

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 10/205 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PS  +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELERELESLIQLNGAPSWNIRLSAGEHAARSLVWPKLKSFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    +P Y      P + 
Sbjct: 125 VELVVDNGFVDIVDGRFDAGIRLGESVDKDMIAVRIGPDMRMAMVGSPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL 208
            EL  H          +C+ +  W+
Sbjct: 185 HELQNH----------RCINNVTWI 199


>gi|296536519|ref|ZP_06898608.1| transcriptional activator AmpR [Roseomonas cervicalis ATCC 49957]
 gi|296263155|gb|EFH09691.1| transcriptional activator AmpR [Roseomonas cervicalis ATCC 49957]
          Length = 291

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 16/242 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT A  +LH++Q++IS Q+  LE  +G+ LF R  RGL LT++G+ 
Sbjct: 11  NALRAFEASARHLSFTKAGLELHVTQAAISHQVKSLEENLGVALFRRLPRGLALTDEGAA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +E + ++  +    +   V+    L +     L    L   L+ F   +P I ++
Sbjct: 71  LLPEIAEGFRRIGRSLDRFEAGQVREV--LTVGVVGSLAVGWLLPRLERFRQAHPFIDLR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N  +D++ +  DCAIR        +   R L +  +    AP      R P   ++
Sbjct: 129 LLTNNNRVDLAGEGLDCAIRFGDGAWHGTEAVR-LFSAPLSPACAPGVAARLRRP---ED 184

Query: 186 LDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L    L+     D  P+      W A++D P   PR   +  +S L + +    G+G+AL
Sbjct: 185 LAGEVLLRSYRADEWPR------WFASLDLPCPPPR--GMIADSSLVLAEAAAQGAGVAL 236

Query: 244 LP 245
           LP
Sbjct: 237 LP 238


>gi|283835902|ref|ZP_06355643.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291068073|gb|EFE06182.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 299

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 133/301 (44%), Gaps = 21/301 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+ L L + S+SRQI  LE  +G +L +R  R + LT+ G   +
Sbjct: 7   MQLFTRVAELESFSRAADTLGLPKGSVSRQIQALENHLGTQLLHRTTRRVQLTQDGMIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+             SGKLR+   + + +NL+   L  FL  YP ++++L 
Sbjct: 67  ERAKDLLSNLDELDGLFHHDPASISGKLRVDMPVGVARNLVMPRLPGFLHQYPGLELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   ++ S LI R L  +     A+P YL     P S+++L 
Sbjct: 127 SSDRLVDLIREGFDCVVRV-GTLKDSGLIARPLGKLTQVNCASPKYLARFGYPESLEDLA 185

Query: 188 KHNLITFGDLIPKCMEDF--------NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            H ++ +   +    + F         W+ T            L VNS  +    C+ G 
Sbjct: 186 SHAVVHYSVNLGTRAQGFEVATGSGIQWVKTG---------GMLTVNSTETYHAACLAGL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  +P   V++      LV ++         V   YP     + ++  F  ++    +D
Sbjct: 237 GIIQVPRVGVREALRAGTLVEVLPQYRAEPMPVSLLYPHRRNLSRRVHLFMEWLTGVMKD 296

Query: 297 W 297
           +
Sbjct: 297 Y 297


>gi|83716147|ref|YP_439671.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83649972|gb|ABC34036.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 325

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V ++GSFT AA  L + ++++SR++  LE ++G++L +R  R L LT
Sbjct: 21  MAADPNDTLIFVRVVQAGSFTAAARLLRMPKTTVSRRVMTLEAQLGVQLLHRTTRRLGLT 80

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  +     +  +L+     + +    P G LR+      G   +   L  F   YP
Sbjct: 81  EAGSLYYSHCRNMAAQLDEAHAAVSQLQSGPRGWLRVTLPYSFGTTWIAPLLAGFRQAYP 140

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++++++  +  +D+  D  D A+RL   +  S L+ R+L +     YA+P YL     P
Sbjct: 141 DVRLEILASHVPLDLVADEIDIALRL-GVLADSDLVARRLGSFATGVYASPSYLMRHGVP 199

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCV- 236
               EL  H  +T    + +      +   + +P G  +   L    V S  +++   + 
Sbjct: 200 EHPGELGAHRALT----LHQARRAVGYAWPLRKPGGRAQYFALDPVIVASDPALIHDALC 255

Query: 237 LGSGIAL-LPDYIVKDNP--NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+ L +   +  D+    + R++ D   P+      +P     + K++AF +++
Sbjct: 256 AGEGLTLAMHQSMAADHEAGRVRRVLSDWSGPAQDFNALFPRGRVASPKVRAFVDYL 312


>gi|115360894|ref|YP_778031.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286222|gb|ABI91697.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 330

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 124/247 (50%), Gaps = 18/247 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F   AR  SFT A ++L+++QS++SRQ+  LE ++ I+LF+RH R LTLT++G +
Sbjct: 17  DFLRGFECAARHLSFTRAGQELNVTQSAVSRQVKALEEQLRIELFHRHIRSLTLTDKGRE 76

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   S     LE+   +L  S  + S  + ++TT+      L   L  F   YPDI ++
Sbjct: 77  LYDAISIALSDLESVVGKLSSSVGQRS--ISLSTTVSFAALWLIPRLGSFRASYPDIDVR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPI----QSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  D+       A+R   P      +  L + ++V +   A A        R  +
Sbjct: 135 VSATSEIEDLKRKRLHLAVRYAGPCTPLDDTQVLFRERVVAVCSPALAT---AVGGRPSM 191

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPR---ISCLQVNSYLSIMQYCV 236
           +  +LDKH L+   D  P+   ++ W A  +  + +G PR   +  L  + Y  ++Q  V
Sbjct: 192 TPDDLDKHVLLHLDD--PR--GEWPWYAWSNLLKALGVPRLRPVGALHFSQYDQLVQAAV 247

Query: 237 LGSGIAL 243
            G GIA+
Sbjct: 248 DGHGIAI 254


>gi|330810344|ref|YP_004354806.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378452|gb|AEA69802.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 299

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 124/257 (48%), Gaps = 7/257 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  WD LR+F  VAR  + + A +QL + QS++SR+I+ LE  +G  +F R + GL L +
Sbjct: 5   NLSWDDLRIFMHVARCQNLSRAGKQLKIDQSTVSRRINQLEYALGFSVFERSSSGLQLND 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG++L      + +       +L   +   SG++R+ T   L    L   + +  LL+P+
Sbjct: 65  QGARLLAQVEVMGNGFSGLLEQLSSGTNTVSGRVRVGTMEGLASLYLTQQVPKLQLLHPN 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+     + ++   AD  +   +P         ++    ++ Y +  YL +   P 
Sbjct: 125 VTLELVTSTHQLQVTRREADIFLGFFEP-SGQGFHTERVGQFELNLYGSDDYLLSHGTP- 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+Q L+ H  + + + + + +E   WL   D  I  P++     NS L+ M     G+G+
Sbjct: 183 SLQTLENHLFVGYIEELVQ-IEAVKWL---DELISTPKL-VFHSNSMLAQMFAASAGAGL 237

Query: 242 ALLPDYIVKDNPNLVRI 258
            +LP +   +   L +I
Sbjct: 238 VMLPSFAHAERFGLRKI 254


>gi|299065182|emb|CBJ36348.1| putative transcription regulator protein, LysR family (aaeR)
           [Ralstonia solanacearum CMR15]
          Length = 299

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 30/297 (10%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V  +GSFT AA QL +S   + + +  LET +G +L  R  R  +LT+ 
Sbjct: 2   DKLRSMETFVAVVDAGSFTEAATQLEISAVMVGKYVRELETRLGARLLQRSTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     V  ++   +  ++    +PSG LR++     G  ++      F   +P +
Sbjct: 62  GRVFYEDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D++ +  D A+R+   +  + L+ + L    M   A+P YL     P +
Sbjct: 122 RVELDLSNRMVDLADEGFDLAVRI-GALGDADLVAKPLCAYRMVICASPDYLARHGRPET 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPI---GEPRISCLQVNSYLSIM 232
             +L  H          +C+    W       L+  D        P  SC   N    + 
Sbjct: 181 PADLPAH----------RCLSHMVWNSRNAWQLSGWDGTTTWRDNPAFSC---NDGHGLR 227

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              + G+G+ L P+ +V ++     LVR+++        V+  Y +  +   KL AF
Sbjct: 228 MAAIAGAGLLLQPEVLVAEDLASGRLVRVLQTYAPQPRPVHLVYRQDRRPLPKLTAF 284


>gi|221214857|ref|ZP_03587826.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221165396|gb|EED97873.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 324

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEGALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +T    +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGELFYQHCQAMLAEAQTAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L     P
Sbjct: 125 VKVHIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L  ++L     +    +  + +  FN +A    P G       +PR   L     ++I +
Sbjct: 185 LVPEDLAHFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292


>gi|207742543|ref|YP_002258935.1| hypothetical protein RSIPO_00731 [Ralstonia solanacearum IPO1609]
 gi|206593935|emb|CAQ60862.1| hypothetical protein RSIPO_00731 [Ralstonia solanacearum IPO1609]
          Length = 308

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 136/290 (46%), Gaps = 32/290 (11%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE
Sbjct: 3   TMEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P+
Sbjct: 63  AGSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQYLTEPVCQALARFPN 122

Query: 122 IQIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +QIQ+ +  +  D ++  Y    + + + +  SSL+ R++V I    YAAP  L   R P
Sbjct: 123 LQIQVQISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAG-RAP 181

Query: 181 LSIQELDKHNLITFGDLIP-KCM---EDFNW---------LATVDRPIGEPRISCLQVNS 227
           L+          T  DL    C+   +D +W          A ++ PI +PR+  L  N+
Sbjct: 182 LA----------TPADLAGWPCLSGPDDASWGFRPAGAPAAAPLEVPI-QPRLQTL--NA 228

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            + + +  V G G+A +   +     +   LVR++ D       VY   P
Sbjct: 229 EMRV-RAAVRGLGVARMARSVGDAEVETGRLVRVLSDYEPTPLRVYALMP 277


>gi|83644012|ref|YP_432447.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632055|gb|ABC28022.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 300

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  VA+  +F  A+ +LHLS SS+SRQI+ LE E+ + LF R  R + LT+QG +L+
Sbjct: 8   LRVFLSVAKHLNFAQASAELHLSASSVSRQITELEKELNVALFTRSTRMVALTQQGQRLY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+     L++   +  G++ ++         +   L      YPD+ + L 
Sbjct: 68  EEAAPLVISLDEVSDCLRQQKEEVGGRVSLSAPWWFASYFIAPALAGLRDHYPDLTVILD 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D++ ID +    D  +R  + +  S L+ +K         A+P Y++   +P   ++L 
Sbjct: 128 CDDRVIDPNEGLHDIYVRFGR-LNDSRLLAKKFGAYEFWLIASPQYIEKYGDPKHPKDLH 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIAL 243
            H L+ +    P      +W+   D    + RI+     L  N+  SI+   +   GI L
Sbjct: 187 DHRLLAYRFSSPHS----SWI--FDDGASQQRIAMQSPYLLTNNTESILHCALNHGGIGL 240

Query: 244 LPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L D+ V ++     L+R+M +  ITP+      Y    K+  K+K  +  I
Sbjct: 241 LADHGVLNSVKRGELIRLMPNYAITPNRFENGMYLVYSKDKAKIKRVKTVI 291


>gi|53718574|ref|YP_107560.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|126453248|ref|YP_001065283.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167737536|ref|ZP_02410310.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167814655|ref|ZP_02446335.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167823123|ref|ZP_02454594.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167844685|ref|ZP_02470193.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167893213|ref|ZP_02480615.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167901667|ref|ZP_02488872.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167909917|ref|ZP_02497008.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167917939|ref|ZP_02505030.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217419696|ref|ZP_03451202.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|254181468|ref|ZP_04888065.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254196355|ref|ZP_04902779.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254260570|ref|ZP_04951624.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|52208988|emb|CAH34927.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|126226890|gb|ABN90430.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|169653098|gb|EDS85791.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184212006|gb|EDU09049.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217397000|gb|EEC37016.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|254219259|gb|EET08643.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 320

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 16/262 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E    +  P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 126 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +LD+HN I         P   E+   L         P    L +    SI +  V G G+
Sbjct: 185 DLDRHNCIGLSGNAKAWPFVAEEGQRLL--------PSAGNLLLGDNESIREAAVSGLGL 236

Query: 242 ALLPDYIVK---DNPNLVRIME 260
           A L  + V    D   LV ++E
Sbjct: 237 ARLARFHVDADLDAGRLVPVLE 258


>gi|242240724|ref|YP_002988905.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242132781|gb|ACS87083.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 306

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 130/273 (47%), Gaps = 11/273 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  + SF+ AAE + L ++++S+ +  LE  +G +L  R  R + +T++G   +
Sbjct: 7   MRVFVRIVETESFSRAAENMGLPRATVSQVLKRLEVRLGARLLLRTTRQVRMTDEGRLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++  ++E T         +PSG++RI     L + ++   L  F   YPDI + L 
Sbjct: 67  QRCVQLLAEIEETDALFSHQRQRPSGRVRIDMPHSLARLVVIPQLPAFYQRYPDISLALS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  I++  +  DC +R    I   SL  R+L ++     A+  Y     EP S++ L 
Sbjct: 127 ANDTPINVIREGVDCVLRAWI-IDDDSLAARQLASLPQITCASAEYCARYGEPDSLESLS 185

Query: 188 KHNLITFGDLIPKCMEDF--NWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H ++  G   P+  + +   ++    R P   P  + + VN   + +  C+ G GI   
Sbjct: 186 SHRMV--GYFSPRMAQGYPLEFMRQGQRLPYMLP--TWIDVNGADAYVAACLAGMGIMQA 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           P Y ++   D+  LV ++  +  P   +Y  YP
Sbjct: 242 PCYGLRPYLDSGELVTLLPQMPPPDMPLYVMYP 274


>gi|167033915|ref|YP_001669146.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860403|gb|ABY98810.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 300

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 24/297 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A  QL + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  + E     +   S +P G+LR++  + L    L   +  FL  YP +Q
Sbjct: 63  ERYLHHCQAMLLEAEAADETVASMSSEPRGRLRVSCPVALAHAFLPDVISRFLEQYPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++L N+ +D+  +  D A+R+R    +  +L+ R+L    M   AAP +  + REP  
Sbjct: 123 LDMVLINRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIREPGE 182

Query: 183 IQEL------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +  L      +   L+ F  L P   +    L        EPR++   ++ ++       
Sbjct: 183 LASLPVLGAAEADRLVHFRLLGPDGKQQEIAL--------EPRLA---IDDFVVRNAAVR 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G   LP    ++      LVR++ D   P   +   YP      G L A R +I
Sbjct: 232 AGLGFTALPSMFCEEELERGELVRLLPDWSLPGGYLQAVYPH---RRGLLPAVRVWI 285


>gi|94499203|ref|ZP_01305741.1| putative transcriptional regulatory protein (LysR family)
           [Oceanobacter sp. RED65]
 gi|94428835|gb|EAT13807.1| putative transcriptional regulatory protein (LysR family)
           [Oceanobacter sp. RED65]
          Length = 300

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 139/299 (46%), Gaps = 20/299 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  VA++ SFT A ++  +  SSISR+I+ LE  +G  L  R  R + LTE G + +
Sbjct: 7   MQYFAEVAQTSSFTAAGKRFDVPASSISRRIADLEQHLGATLLNRTTRLVHLTEVGQEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E ++  +++   +P GKL I++ +  G+ +L   L EF  L+P + + + 
Sbjct: 67  AQVKSILDQIERSETYVRQYQSEPQGKLVISSMVGFGERILIPLLDEFRALHPKVVLDVR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++   ++ D  D AIR      +  ++ +KL+       A+P YL+    P+  ++L 
Sbjct: 127 LSDEVSQLNRDQVDIAIR-GGYAPNERVVAKKLMNNQFIPVASPSYLEANGLPIKHEDLK 185

Query: 188 KHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           KH  + F    G       ++  W     +P        L  N+   ++   + G G+ +
Sbjct: 186 KHQGLFFRTPMGPTPWLYQQNGQWHDVSPKP-------TLISNNGKWLIARAIEGQGLLM 238

Query: 244 LPDYIVKDNPNLVRIMEDVITP--------SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP ++V+       ++   + P         F VY  Y   +    K+KA  +FI  +A
Sbjct: 239 LPAWVVQSQLESGELVSLKLDPPLQISDGAGFGVYILYETDMYRIPKIKAAVDFILARA 297


>gi|124266064|ref|YP_001020068.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124258839|gb|ABM93833.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 313

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 8/298 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  V  +G+FT AA+ L L + +++R +  LE ++  KL  R  R +T+T  G+
Sbjct: 4   FSAMQAFVRVVEAGNFTKAADSLQLPKPTVTRLVQMLEAQLQTKLLNRTTRRVTVTPDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  +  +   P G+LRI     +G  +L   L +F  LYPDIQI
Sbjct: 64  AYYDRAIRLLGDIDELESSMSHAKTSPRGRLRIDVGSSVGTLVLIPALPQFHALYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +D+  +  DC +R  + I   SL+ R++  +   A A+P YLK    P   +
Sbjct: 124 DLGVSDRPVDLLSENVDCVLRGGELI-DQSLVARRVGELQFLAAASPDYLKRHGMPRHPR 182

Query: 185 ELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL+   H +I F          F++    +R I       L VN   + +   + G G+ 
Sbjct: 183 ELESGAHAVIGFFSARTGRQYPFDFHKDGER-IEVAGRYVLSVNDSNAYVAAGLAGLGVV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF-LKARD 296
               ++++       L  ++ D  +    ++  YP     + KL+ F +++  L ARD
Sbjct: 242 QAATFMLQTHISRGELEPVLADWCSEPVPIHVVYPPNRHLSAKLRVFVDWVAELFARD 299


>gi|330967376|gb|EGH67636.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 297

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 129/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +   E G +
Sbjct: 7   NDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPPEAGEQ 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +L+  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    AP Y +    PL  Q+
Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFEKHPVPLQPQD 186

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L +H  I         C   + W    D      R++     NS + ++   + G G+A 
Sbjct: 187 LTQHTCINIRHSPNGSC---YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSF-TVYFCYPEALKNTGKLKAF 286
           +P  + + +    R+ E ++  +P F   +  YP   + +    AF
Sbjct: 244 VPISLAQPHIESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAF 289


>gi|323967147|gb|EGB62571.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|327253689|gb|EGE65318.1| hypothetical protein ECSTEC7V_1114 [Escherichia coli STEC_7v]
          Length = 302

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 26/302 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLIPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +         A P Y 
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQ 233
               +P    +L  H  + F    P   + F+W    +  I     I    V++ L  + 
Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVAGNIILDDVDAELDAV- 230

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
             ++G+GI  L    +K   D   L  ++ED IT  P F +Y  YP     +  L+AF +
Sbjct: 231 --LMGAGIGYLLYEQIKEYLDTGRLECVLEDWITERPGFQIY--YPNRQYMSCGLRAFLD 286

Query: 289 FI 290
           ++
Sbjct: 287 YV 288


>gi|268593088|ref|ZP_06127309.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291311357|gb|EFE51810.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 306

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 147/291 (50%), Gaps = 11/291 (3%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L+   VF  +   GS + AAE+L +S++ ++R +S +E   G++L  R  R L+LT  
Sbjct: 2   DRLKAAEVFITIVEQGSLSGAAEKLDMSRAMVTRYLSEMEQWAGVRLLNRTTRKLSLTSA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +++ + ++    +   ++ +  +   SG +RI+ +  + Q+ L   + EF+ LYP++
Sbjct: 62  GEGVYQQSLQLNAISQMVPVQQELDAKALSGLVRISCSQSIAQSALSVAISEFMKLYPNM 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I + + NK +++  +  D AIR+   ++  SLI + L T H    A+P +LK  ++P  
Sbjct: 122 AIDMQISNKSVNLIEERIDLAIRITNQLE-PSLIAKPLSTCHSVICASPDFLKGKKQPEK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L   + +T+ +   + +  F         + + R+S    N  + + +  + G+GI+
Sbjct: 181 PEDLVLLDCLTY-NFFGRSLWVFEKAGMQHSVLVDGRLSA---NESVFLAEATLQGAGIS 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + P Y V +   +  LV+++ +       +Y  Y    K    L+   +++
Sbjct: 237 MQPYYSVANHLASGELVQLLPEYTPMPLGIYAVYTSRQKMPTALRVVIDYL 287


>gi|157370695|ref|YP_001478684.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157322459|gb|ABV41556.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 295

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 122/283 (43%), Gaps = 16/283 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR  SFT AA QL ++Q ++S+ IS LE  + I+L  R  R ++ T
Sbjct: 1   MKRNLNDLLYFVTVARESSFTRAAAQLGVTQPALSQAISALEERMQIRLLTRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L         ++E     L E   KP+G++RI    D+  + L   L   L  YP
Sbjct: 61  SAGERLLLAIGNRIDEIEAELDMLTELRDKPAGRVRITCGPDVLHSTLLPKLSPLLREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI I+   ++   DI  D  D  +RL   I    +       + M   AAP Y      P
Sbjct: 121 DINIEFDANHGFRDIVADRFDAGVRLGDTIDKDMIAVPIGPKLRMAVVAAPDYFSRYPIP 180

Query: 181 LSIQELDKH-----NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQY 234
            +  EL +H      ++  G L       + W    D      R+S  L  N+ + I+  
Sbjct: 181 NTPHELTQHLCINQRMVRSGGL-------YVWDFDQDGGDLNVRVSGQLIFNTSVHIVDA 233

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            + G GIA LP+       ++  L+R++E    P    Y  YP
Sbjct: 234 ALAGLGIAFLPEEEFGKHIEDGRLIRVLEPWCKPFPGYYLYYP 276


>gi|114763708|ref|ZP_01443102.1| transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114543709|gb|EAU46722.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           HTCC2601]
          Length = 293

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 134/288 (46%), Gaps = 16/288 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAYQVARLGTVSGAAEVLGVHHATVIRHIDALEARMGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      + +     ++      SG+L + + I+    L+ G L+ F   +P+I 
Sbjct: 63  QDLARVAQATDDQFQQLAGRIKGQGEGVSGELLVTSLINF-SPLMVGALESFREAHPEIV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +   +   +    A  A+R     Q    + +      +  + A  Y++   +P S+
Sbjct: 122 VRYLTGTRLFRLEYGEAHVALRAGSAPQEPDNVVQPFARQAVALFGARSYIERRGKPDSV 181

Query: 184 QELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCV-LGSGI 241
           + L  H+ + + D  P     +  W+    + +   R+     +    + Q  V  G+G+
Sbjct: 182 EALQSHDFVGYDD--PDSRAPYAIWM---KKHVPFERVVFRAEDG--RVQQEAVRAGAGL 234

Query: 242 ALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAF 286
             + +   + +P+LV+I+   ED  +P + V       L  T K++AF
Sbjct: 235 GFMAEQEGRADPDLVQILPAQEDWSSPLWLVTHV---DLHRTPKVQAF 279


>gi|91223043|ref|ZP_01258309.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91191856|gb|EAS78119.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 318

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 128/291 (43%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R   LTE G +  
Sbjct: 7   LRFFIATLDGGSFAAAAKVYGTDPSTVSKAIHRLESDLGIQLFQRSTRQSRLTEAGRRYA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +L   +  L+  +   SG+L+I   +  G+  ++  LKEF   YP+I I + 
Sbjct: 67  NTARFVLEELAACEDSLKSHNDALSGQLKINVPVSYGRLYIRPLLKEFCRRYPNITIDIH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+  +DI     D +IR    +  S LI R+L  I     A+  YL     P      +
Sbjct: 127 YDDAYVDIIEQGIDVSIR-SGVVHDSQLIVRQLSPIDFIICASQDYLARHGVPSGSDVFN 185

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+ + F     G L+P  M + +  +  D     P  + + VN   S+ + C  G G+ 
Sbjct: 186 DHSWVRFRFKQTGKLLPIRMPEPDGASEYD-----PERNYI-VNDGESMAELCAEGLGLT 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P +I +D      LV I   +      VY  Y        +++ F +FI
Sbjct: 240 QIPHFIARDWLKAGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFI 290


>gi|300702496|ref|YP_003744096.1| transcriptional regulators, lysr family [Ralstonia solanacearum
           CFBP2957]
 gi|299070157|emb|CBJ41448.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           CFBP2957]
          Length = 298

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 124/283 (43%), Gaps = 20/283 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q +  R +  LE  +G  LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L          LE+T   L  ++        G +RI  +  +   +L   L +    YP
Sbjct: 68  VLQ----PYAESLESTSAALLRAASSQGQGVRGTVRITASEVVTGEVLPAILADLHAAYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L+  N+  D+    AD A+R+++P Q   LI R +  I +  +A   YL+    P
Sbjct: 124 GLTLELVPSNRLEDLLRRDADIAVRMQRPSQ-GVLIARHIGGIELGVHAHRRYLERRGTP 182

Query: 181 LSIQELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            ++ +L  H LI +      I        W+   DR         L+ +S L+ +     
Sbjct: 183 ATLDDLAGHALIGYDRETAFIRGMKGQVPWMRR-DR-------FALRTDSDLAGLAALRA 234

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
           G GI +    + + +P+LVR+  D + P    +    E L+++
Sbjct: 235 GFGIGICQVGLARRDPDLVRLFADEVAPVLDTWLAMHEDLRDS 277


>gi|264678214|ref|YP_003278121.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262208727|gb|ACY32825.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 278

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 22/290 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   AR  S T AA++LH++Q+++S+ I  LE  +G  LF R  RGL LT++G  L  V
Sbjct: 1   MFDAAARHQSLTRAAQELHVTQAAVSQHIRNLEERLGKPLFRRLPRGLALTDEGQALWPV 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            ++ + ++E +  ++ E   +P   L +          L   L +F  L+P I ++L+ +
Sbjct: 61  VAQSFERIEQSLQQVAEP--RPREILTVGVVGTFAIGWLIPRLSQFQQLHPYIDLRLLTN 118

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP--LSIQELD 187
           N  +D++ +  D A+R        +  Q  L+   +     P   +  REP  L++Q L 
Sbjct: 119 NNRVDLAGEGLDAAVRFGDGAWHGTHAQ-MLLRAPLSPMCTPMLAQQLREPADLALQTLL 177

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +           +  E   W A +D+    P       +S L++ +    G+GIALLP  
Sbjct: 178 RSY---------RTQEWEGWFAGLDQ--AAPLARGAMFDSSLTLAEAAAQGAGIALLPAR 226

Query: 248 IVK---DNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +       LVR    +V T ++  +  Y ++ + +  L+ FR ++  +
Sbjct: 227 MFEHMLQQGRLVRPFAHEVDTGAY--WLTYLKSRQASAALQTFRQWLMTQ 274


>gi|258625175|ref|ZP_05720091.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258582550|gb|EEW07383.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 299

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIGLGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIVRNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L KHN + +        + +F     N++  V              ++  ++ +  + G 
Sbjct: 183 LVKHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA +P  +V     N  LV +  + +     +Y  YP
Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272


>gi|118593198|ref|ZP_01550584.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118434283|gb|EAV40938.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 308

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 130/284 (45%), Gaps = 6/284 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW++ R F V A  GS + AA  L L+Q ++SRQ++ LE  +G+ LF R ++ L LT
Sbjct: 6   ITFDWNQARAFLVTAEEGSLSAAARALGLTQPTLSRQVAALEETLGVTLFQRVSKSLILT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L      +        +     S +  G + ++TT  +  ++L G L++     P
Sbjct: 66  EAGIELADHVRAMGDAASRVSLAASGKSQQVEGLVTVSTTDLMAAHVLPGILRDLRKKAP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++++  N   D+    AD AIR  +P     L  RKL +     + A   ++    P
Sbjct: 126 GVEVKVLCTNSLSDLRRREADIAIRHVEP-DHPDLYARKLRSAPARIFGARSLVEQFGRP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+ ++    + I F +      E   +L      + E  I  L   S +   ++   G G
Sbjct: 185 LTKEDAPDLDFIGFDN----NEELIGYLRVFGLKVTEVNIR-LGSPSGVVAWEFVRQGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           +A++ D I    P +V    D+   SF ++      L  + +++
Sbjct: 240 LAIMADEIADRFPEVVPAFADIEPISFPIWLVTHRELHTSRRIR 283


>gi|72383824|ref|YP_293178.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72123167|gb|AAZ65321.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 303

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 18/256 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   +  F  V   G FT A   L L +S++S ++  LE  +G++L  R +R  T+TE 
Sbjct: 2   LDLKDVYFFVQVVDRGGFTSAGNSLGLPKSTLSHRVKELEASLGVRLINRTSRQFTVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++ ++    +    +  +  +++   +PSG +R+   ++L Q  L+  L  FL  +P +
Sbjct: 62  GAEFYQYAVALLQSAQVAEEAMRQRLAEPSGVIRVTVAVELAQFALRRILPTFLGNHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            I  +   + +D+  +  D AIR    P+Q S+LIQR L       +A   YL+      
Sbjct: 122 SIIEVATERLVDVVGEGFDLAIRGHTAPLQDSNLIQRPLARAPWFLFAGADYLERAPRLD 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQY 234
              +L  H +I  G   P       W   +  P G       EPR    Q  S +S+ + 
Sbjct: 182 EPAQLASHTIIAMGRKGPP-----QW--QLQGPQGQTVTVHIEPR---FQSTSMMSLKEA 231

Query: 235 CVLGSGIALLPDYIVK 250
                GIA +P YI +
Sbjct: 232 ACSNLGIAAIPGYICR 247


>gi|323966039|gb|EGB61479.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|327251164|gb|EGE62857.1| hypothetical protein ECSTEC7V_4151 [Escherichia coli STEC_7v]
          Length = 299

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 134/288 (46%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL  +P I+++L 
Sbjct: 67  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             N+ +DI  D  DC IR    +    +I   L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHNRPVDILHDGFDCVIR-TGALSEDGVIACPLGKLTMVNCASPHYLTRFGYPQSPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +     G GI  +P  
Sbjct: 186 SHAIVRYTPHLSVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGFAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|167718486|ref|ZP_02401722.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 320

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 16/262 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E    +  P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 126 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +LD+HN I         P   E+   L         P    L +    SI +  V G G+
Sbjct: 185 DLDRHNCIGLSGNAKAWPFVAEEGQRLL--------PSAGNLLLGDNESIREAAVSGLGL 236

Query: 242 ALLPDYIVK---DNPNLVRIME 260
           A L  + V    D   LV ++E
Sbjct: 237 ARLARFHVDADLDAGRLVPVLE 258


>gi|317049580|ref|YP_004117228.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951197|gb|ADU70672.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 299

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 134/285 (47%), Gaps = 26/285 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++LR +  V  +GS T AAEQL  + S ISR +S LE+++   L +R  R L LT
Sbjct: 1   MKITLEELRAWVTVVDTGSITSAAEQLEQTSSGISRALSRLESKLETTLLHRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   +E  + ++ +    P+G+LR+        +++   +  F   +P
Sbjct: 61  EEGQIFLEHARQILASVELAEEQIAQRRDVPAGRLRVNAAAPFMLHVIVPLVDAFRQRFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  D+  ID+     D AIR+ + ++ SSL  R L +  +   A+P YL     P
Sbjct: 121 QIQLELNTDDIVIDLLEQQTDIAIRVGE-LRDSSLRARVLGSSAIRLLASPAYLAKHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLS------IMQ 233
            ++  L  H L+ F  L     E  N W      P+ +     L+V   LS      + Q
Sbjct: 180 QTVASLHDHQLLGFSQL-----EAHNVW------PVWQQEGEFLRVKPTLSASSGETLRQ 228

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIME----DVITPSFTVYF 271
             + G GI  L D++ + +     LV+++E    ++  P   VY+
Sbjct: 229 LALAGQGIVRLSDFVSRGDRVSGRLVQVLETETRELRLPIHAVYY 273


>gi|217423379|ref|ZP_03454880.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217393237|gb|EEC33258.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 350

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 136/302 (45%), Gaps = 14/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 54  DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 113

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 114 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 173

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 174 VQMQLTDAVVDLIAHDVDVAVRI-GMLADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 232

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 233 ADLCAHRCIVLGE-----QPRVEWRFDGSHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 287

Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
              + V   P+L      R++ +  + +  ++  YP       +++ F +++ ++  R W
Sbjct: 288 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 345

Query: 298 KF 299
           ++
Sbjct: 346 RW 347


>gi|76812150|ref|YP_333284.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|76581603|gb|ABA51078.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
          Length = 333

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 136/302 (45%), Gaps = 14/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 37  DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 96

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 97  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 156

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 157 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 215

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 216 ADLCAHRCIVLGE-----QPRVEWRFDGPHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 270

Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
              + V   P+L      R++ +  + +  ++  YP       +++ F +++ ++  R W
Sbjct: 271 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 328

Query: 298 KF 299
           ++
Sbjct: 329 RW 330


>gi|15837734|ref|NP_298422.1| LysR family transcriptional regulator [Xylella fastidiosa 9a5c]
 gi|9106094|gb|AAF83942.1|AE003949_6 transcriptional regulator (LysR family) [Xylella fastidiosa 9a5c]
          Length = 301

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 132/279 (47%), Gaps = 13/279 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +++F  V  +G F  A ++L L++S+I + I+ LE  +G++LF R  R  +LTE G 
Sbjct: 5   FDGVQLFVEVVEAGGFAKAGKRLSLTRSTIGKAIARLEMRLGVQLFQRTTRVQSLTEDGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +        +L   +  L++   + +G+L ++  +  G++ +   L+ +   +P +++
Sbjct: 65  QYYERCLRAIKELRAGEAMLEQGRREVAGQLHVSLPVLFGRHCVAPILRTYAREHPQLEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D+  D  D A+R       ++L  R+L        A+P YL    +P ++ 
Sbjct: 125 ELNFSDHHVDLIADGFDLAVRNGPLGNGTTLRARRLGNQRKILCASPIYLAARGKPHTLA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240
           +L  H+L+T+      C  D N   T+    G     P  S L+ N    I    V G G
Sbjct: 185 DLADHDLLTY------CRNDRNMAWTLPDATGALVDIPITSRLRCNDLEVIADTAVDGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           +A LP +++ +      L+ I  D  +     +  +P A
Sbjct: 239 VAWLPYWLLMERMQRGELIGIWGDRPSAVMECHVVWPAA 277


>gi|330823298|ref|YP_004386601.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|329308670|gb|AEB83085.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 321

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 3/188 (1%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  VAR  +F  AA++L L+QS++SRQI  LE EVG+ LF RH R + LT  G +LHR
Sbjct: 21  RAFLAVARHLNFRAAADELALTQSAVSRQIQALEDEVGVPLFLRHTRAVELTGAGVQLHR 80

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +    +L+    ++++ + + S  + IAT        L   ++EF   +PDI I++  
Sbjct: 81  AVAPALDRLDAAVRQVRQMAGRRS--VAIATWASFASMWLIPRMEEFQCAHPDIDIRIDT 138

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +  +D+     D A+R   P  S+   +R L    +   A+P  LK+        ++ +
Sbjct: 139 SDSVVDLDTADVDLALRWATPGGSAPGAER-LFGEQLAVVASPWLLKSMPPVRQPADVAR 197

Query: 189 HNLITFGD 196
             LI  GD
Sbjct: 198 FALIEAGD 205


>gi|68342508|gb|AAY90131.1| putative transcriptional regulator [uncultured bacterium pCosCE1]
          Length = 309

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 101/193 (52%), Gaps = 12/193 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR GSFT AA QL ++  ++S+ I  LET +G++LF R +R + L+++G   +
Sbjct: 8   LPFFEAVARLGSFTQAANQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLSDEGRLFY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +    +++    +L+    +PSG LRI         L+  +L EF   YP+IQ++L 
Sbjct: 68  QRVAPAMGQIDVAAEDLRTLRGRPSGLLRITLPQLAASLLVIPHLAEFQARYPEIQLELF 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYLKNCREPL 181
            D+   D+ +D  D  IR+       +++Q+ ++ + +         AAP YL     P 
Sbjct: 128 TDDHFSDLVLDSFDAGIRMH------AMLQKDMIAVPIDNGQKRVVIAAPGYLAQHGTPQ 181

Query: 182 SIQELDKHNLITF 194
           + Q L+ H+ + +
Sbjct: 182 TPQALNDHDCLRY 194


>gi|312961245|ref|ZP_07775750.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311284903|gb|EFQ63479.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 304

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 7/234 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR GSF+ A ++LH++Q++ISRQI GLE  +G+KLFYR  R + LT++G  L RV 
Sbjct: 17  FEAAARLGSFSKAGDELHITQAAISRQIRGLEDNLGVKLFYRRNRAVFLTQEGHDLARVV 76

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S+  H +  +   L+ S    S ++ +   +      L   L  F   YP I+IQ++   
Sbjct: 77  SDALHSIRDSAARLRAS--PHSNRVVLLCQLCEAFYWLMPRLSSFHQQYPQIEIQVVTST 134

Query: 131 KDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +       D A++  R+   +  L+     +  +    +P YL   + PLS+ +L   
Sbjct: 135 RPLTEFTGPFDVALQSTRRASGAHPLM--FTASDEVFPVCSPAYLATPK-PLSLADLQSC 191

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             +      P  ME  +WL    + + E   S +  +SY  ++Q  V G G+A+
Sbjct: 192 TFLHHSSEPPHLMEWESWLQVFGQALAEDARS-VTFDSYPLMLQAAVEGHGVAM 244


>gi|311107070|ref|YP_003979923.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761759|gb|ADP17208.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           130 [Achromobacter xylosoxidans A8]
          Length = 301

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 129/283 (45%), Gaps = 8/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA +L +S +S+S+ +S LE  +G  L  R  R + LT+ G   +
Sbjct: 7   MSVFCKVVEHGSFTVAATRLDMSTASVSKNVSALEDHIGTPLLARTTRRIVLTDAGKTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +   +E  +    +    P G L++   I  G   L   +  F   +P++ +++ 
Sbjct: 67  DKCSRILEDVEEAERTAGQVQTTPRGLLKVRAPISFGSANLGRLITAFTTSFPEVTVEMT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D + +  D A+ +    +  +   + + T+     AAP YL+    P  IQ+L 
Sbjct: 127 LNDRYLDPAEEGVDVALYIGATPKHFAAGAQAIATLPRMLVAAPLYLERQGLPTEIQDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +     +      W  T +       +S  L+ N+  ++    + G+G+ LLP 
Sbjct: 187 SHQCLVYT----RGASPSEWRFTRNGVEQTVHVSGSLRCNNSQTLHDAALSGAGVGLLPT 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++V  +     L  ++ D       +Y  YP+  +++ K++ F
Sbjct: 243 FLVAQDLACGRLTHLLPDWQPAERNLYAVYPQPRRSSPKVREF 285


>gi|254524116|ref|ZP_05136171.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721707|gb|EED40232.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 324

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 99/188 (52%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SFT AAE++ +S+ ++S+ +  LE ++G++L +R  R ++LTE+G +L
Sbjct: 14  QLAWFAHIAHHRSFTKAAEEMGVSRPALSQSLKTLEKQLGVRLLHRTTREMSLTEEGQRL 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     +++   +L+ S   PSG LRI T     + L++ +L EF  LYP+++++L
Sbjct: 74  FDAVQPSLSTIDSAVRDLRASHDAPSGLLRINTARLTAKTLIEPHLPEFFALYPELRVEL 133

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D+    I  +  D  IRL + +    +       + M   A+P YL     P +  EL
Sbjct: 134 VMDDGLSSIVAEGCDAGIRLGERLAKGMIAVPVTPMLEMVVVASPAYLARHGTPSTPAEL 193

Query: 187 DKHNLITF 194
             H  + +
Sbjct: 194 AGHECLGY 201


>gi|212635360|ref|YP_002311885.1| transcriptional regulator [Shewanella piezotolerans WP3]
 gi|212556844|gb|ACJ29298.1| Transcriptional regulator [Shewanella piezotolerans WP3]
          Length = 297

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 17/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA   SFT AAE+L LS+  +SR ++ +E  +  +L +R  R ++LT  G    
Sbjct: 7   MRSFVEVAHCASFTKAAERLDLSRLQVSRHVNEIEAWLEQRLLHRTTRKVSLTTAGEAAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H+    ++  +  +   SG +RIA  I L QN+L   +++F   +  + +QL 
Sbjct: 67  LRCEMILHETLALEVAAKHHTPSLSGTIRIAAPIGLTQNMLIDAVEKFTGAHAGVNVQLF 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  ++  +  D A+R  +   + +LI R+L+ I     A+  YL+   EP  I+EL 
Sbjct: 127 ASDQFAELVDERIDIALRYTEQ-PADNLIARRLMNIDSVICASAAYLEQFGEPKEIEELK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP- 245
           +HN           +E  +W    D       +S  ++ N    +++    G GI LLP 
Sbjct: 186 EHNCFLH-------LEKTSWEFIRDNSRSAITVSGSIKANDLGVLVKAAQHGKGIVLLPC 238

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              + ++ D  +L  I+ +   PS T++  Y   L  + +L   R FI   A  W
Sbjct: 239 DLANPLISDG-SLQMILSEYEIPSSTLWAVY---LSRSYQLPVVRQFIDFLAEHW 289


>gi|167856830|ref|ZP_02479465.1| transcriptional regulator, LysR family protein [Haemophilus
           parasuis 29755]
 gi|167852046|gb|EDS23425.1| transcriptional regulator, LysR family protein [Haemophilus
           parasuis 29755]
          Length = 243

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 124/254 (48%), Gaps = 29/254 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           ++VF  VA +GSFT  AE+L +S+  ISR ++ +E  +  +LF R  R + LT+ G    
Sbjct: 7   IKVFLTVAETGSFTATAERLEISKPMISRYVALMEEWLNARLFQRSTRKVALTDAGEQAV 66

Query: 65  ----KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               ++  +T+E+  ++   Q EL+       G LR+ ++   G   L   +  FL L+P
Sbjct: 67  LFCQRIANLTAEMEQEMMAQQGELR-------GALRVTSSQTFGAYHLVQMVNRFLQLHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQL+L+++ +D+  +  D AIR+       + I RKL   H    A P YL     P
Sbjct: 120 KLNIQLLLNDQTMDLISERIDLAIRITN-TPDPNFIARKLADCHSLLVATPEYLTKFGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYC 235
              ++L +H+ ++  ++  K      W  T     GE  +     S    N   +++   
Sbjct: 179 TQPEDLYQHHYLSHHNINRKA-----WKCTQ----GEQEVLLDLNSRFTTNDTQALLNSV 229

Query: 236 VLGSGIALLPDYIV 249
           +  +GIA+LP Y++
Sbjct: 230 LDSNGIAMLPKYML 243


>gi|84389440|ref|ZP_00991246.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84376955|gb|EAP93828.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 298

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 139/304 (45%), Gaps = 35/304 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA   SFT AAE L +S+  +SR +  +E  +  +L +R  R ++LT  G    
Sbjct: 7   MRSFVEVANCASFTQAAEHLDMSRLQVSRHVQEIEGWLKQRLLHRTTRKVSLTTAGEIAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL- 126
           +   ++ H+    ++     +   SG +RIA  I L Q++L   +++F  L+P I ++L 
Sbjct: 67  QRCEKILHETAELEVTALNQTDALSGTIRIAAPIGLTQHMLLSVVEQFTELHPSITVELF 126

Query: 127 -------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
                  ++D++ IDI++ Y D      +P    SLI RKL+ I     A+  YL    E
Sbjct: 127 ASDHFAQLVDDR-IDIALRYTD------QP--DDSLIARKLMEIDSVVCASQDYLDKHGE 177

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P +++ L +HN         + +    W    D       +S  ++ N    + +    G
Sbjct: 178 PETVEALRQHNCF-------RHLSVSKWDFVKDNQHYSVEVSGTIKANDVGVLARAAQHG 230

Query: 239 SGIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+  LP  +   NP      L RI++D ++PS  ++  Y   L  + +L   R FI   
Sbjct: 231 KGVVRLPCDLA--NPLITEGKLKRILDDFVSPSSVLWAVY---LSRSYQLPVVRQFIDFA 285

Query: 294 ARDW 297
           A  W
Sbjct: 286 AEAW 289


>gi|332307014|ref|YP_004434865.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174343|gb|AEE23597.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 302

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 139/299 (46%), Gaps = 18/299 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT AA+  H+  SS+SR+++ LE  +G  L  R  R + LTE G   +
Sbjct: 7   IRYFCKVVETGNFTQAAKAFHVPASSLSRRVADLEKSLGATLLKRSTRVVKLTEIGRTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++  +LE +   ++     P+G+LRI+  ++ G+ +L   L+EF   YP I + + 
Sbjct: 67  AQVNDILRQLELSNDTVRSYQTVPTGQLRISAMVEFGEPILFPLLEEFSQRYPQIVLDVR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++   ++ D  D AIR      +  ++  KL+     A A+  YL     P    EL 
Sbjct: 127 LSDELSALTRDEVDIAIR-GGYAPNERVVAIKLMENQFVAVASQQYLTQFGTPTCPWELK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H  + +    P       W++ ++   + +  P I+      +L  +   + G GI + 
Sbjct: 186 NHKGLYY--RTPNG--PLRWVSEINGQWQDVSAPPIAVSNNGKWL--LGKVLAGQGIMMA 239

Query: 245 PDYIVKDNPNLVRIMEDVITPS--------FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P +++ +  +   + E  +TPS        F +Y  Y +      K+KA  +F+  + +
Sbjct: 240 PKWLLNEYLDAEELQELTLTPSVNITSSSDFGIYLLYQKQRYLVPKVKAAVDFLVARIK 298


>gi|330876786|gb|EGH10935.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 266

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 132/272 (48%), Gaps = 16/272 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEIEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L  H+ + +G           W   V    G+P I      ++ N+   +    V G G
Sbjct: 183 DLHAHDCLPYGH-----SRQAQWRFQVQ---GKPLILNISGRMRANNGELLRDTAVAGLG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTV 269
           I  LP +IV     + +LVR+++D+     T+
Sbjct: 235 ITYLPTFIVGAALRDGSLVRVLDDLRPEPLTL 266


>gi|78066066|ref|YP_368835.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966811|gb|ABB08191.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 313

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 137/291 (47%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD+ ++L
Sbjct: 66  LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRERYPDVHVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D AI + + +  S L+ ++L   +    A+ +Y++    P    +L
Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASRNYVEAHGVPQRPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  +  G + P    D   LA  +     PI  P     +VN   ++      G GI 
Sbjct: 186 AQH--VCLGMVAPGFQFDEWALAGPNGDEVVPITAP---PFRVNVAEALAVAVREGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP Y       + ++VR+M +  +    +Y  YP       K++ + +F+
Sbjct: 241 GLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFL 291


>gi|320181163|gb|EFW56082.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Shigella boydii ATCC 9905]
          Length = 307

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR  SF   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRASFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|296389043|ref|ZP_06878518.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 303

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 139/290 (47%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  +   G+F  AA+ L L ++S+++ I  LE  +G++L  R  R ++LT  G 
Sbjct: 4   FQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +         P G+LR+     LG+  +   L EF   YP++++
Sbjct: 64  AYYERCVRLLAGLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPELEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL  +++ +D+  + ADC +R+ + +  SSL+ R L  +     A+  YL+    P  + 
Sbjct: 124 QLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPRQLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  + +         DF +  +VD R    P  S + VN+  + +  C  G G+  
Sbjct: 183 ELGGHLAVNYQSPSSGRTADFEF--SVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P Y V     + +L +++ + + PS  ++  YP   + + +++ F +++
Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWL 290


>gi|58040796|ref|YP_192760.1| transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58003210|gb|AAW62104.1| Transcriptional regulator [Gluconobacter oxydans 621H]
          Length = 303

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 134/297 (45%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSF+ D L  F  VAR+G F  AA    LS S +S  +  LET +G +L +R  R ++LT
Sbjct: 1   MSFELDDLSAFVAVARAGGFREAARVSGLSASGLSEALRRLETRLGTRLLHRSTRSISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    S    ++      +   + +P+G + +    ++ + +L G L  FL+ +P
Sbjct: 61  ETGARLFERLSPALTEISAALDTVHAQTYQPAGTIHLNVPANVARTVLPGILSPFLIAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSL-IQRKLVTIHMHAYAAPHYLKNCRE 179
            I++ + +++  +DI    AD  IR  + ++   + I     T  +   AAP YL     
Sbjct: 121 QIRVDVTVEDSFVDILASGADAGIRYEERLEQDMIAIPIGPATQRVLTAAAPSYLSARGR 180

Query: 180 PLSIQELDKHNL--ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           P    EL +H    + F    P  M +F     V R +  P    +Q  S   ++    L
Sbjct: 181 PQHSSELLEHACLRLRFAGGAP-AMWEFEKDEEVIR-LDPPGPLLVQPGSACDLLVETAL 238

Query: 238 -GSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  L  D++     +  L  +++D  TP       Y    +    L+AF +FI
Sbjct: 239 SGLGIVCLFEDWLAPHIRSGALEVVLDDWATPFSGPMLYYSGRRQLPPPLRAFIDFI 295


>gi|28900374|ref|NP_800029.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362094|ref|ZP_05775090.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260877328|ref|ZP_05889683.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260898365|ref|ZP_05906861.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260902902|ref|ZP_05911297.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28808685|dbj|BAC61862.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085082|gb|EFO34777.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308090523|gb|EFO40218.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308107919|gb|EFO45459.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308113815|gb|EFO51355.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 295

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 15/279 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVQSYIRVIEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQL--ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           I +QL   L  +  ++S+D      R  + + S S     L       YAAP YL+    
Sbjct: 121 ITLQLTTTLPGQLPELSLDL--FISRHLEQLNSLSFKATPLFEHKAQFYAAPSYLEKYGT 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +++EL KHN++ +G+   + ++        +R             +  ++      G 
Sbjct: 179 PQNVEELTKHNILIWGEKPAREIK-------TNRGKRMSLSGNFATTNPEALFHGAKRGM 231

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           GI +  + ++KD+     LV I+ DV     TVY  YP+
Sbjct: 232 GILMTNNVMIKDDLKSGALVPILPDVTADEATVYAYYPK 270


>gi|124385436|ref|YP_001026863.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126448309|ref|YP_001079850.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|124293456|gb|ABN02725.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126241179|gb|ABO04272.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
          Length = 320

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 16/262 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E    +  P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 126 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +LD+HN I         P   E+   L         P    L +    SI +  V G G+
Sbjct: 185 DLDRHNCIGLSGNAKAWPFVAEEGQRLL--------PSAGNLLLGDNESIREAAVSGLGL 236

Query: 242 ALLPDYIVK---DNPNLVRIME 260
           A L  + V    D   LV ++E
Sbjct: 237 ARLARFHVDADLDAGRLVPVLE 258


>gi|327481604|gb|AEA84914.1| Transcriptional regulator, LysR family [Pseudomonas stutzeri DSM
           4166]
          Length = 300

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 147/295 (49%), Gaps = 28/295 (9%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+    F  +  +GS + AA+    S +S+ R ++ LE  +G++L  R  R + LT++
Sbjct: 2   DKLKAMANFVRIVDNGSLSAAADASGQSVASVVRSLAALERHLGVRLLNRSTRRMALTDE 61

Query: 63  GSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G++      R+ +E +  +E  +++ Q+ SV+  G LR+   ++ GQ  L   +  FL  
Sbjct: 62  GAQYLAWSRRMLAE-FADIE-QRLDAQDGSVR--GLLRLTAPVEFGQRYLAPLVNAFLEE 117

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P +Q++L L+++ + +  +  D A+R+   +  S+L+ R L T  +   A+P YL +  
Sbjct: 118 HPQVQVELNLNDQIVPLLDERLDLALRIGH-LPDSTLVARPLGTTRLVTCASPDYLASSP 176

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGE---PRISCLQVNSYLSIMQY 234
              +   L +H  I F        +  +W     DR   E   PR++C Q+    S    
Sbjct: 177 PIDTPAALKEHACILFA------AQGRHWYYRDGDREQAEEITPRLTCNQIR---SASLA 227

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           CV G GI  L  Y V D   +  LVR+++D       +   YP +L+ + +++AF
Sbjct: 228 CVQGLGITRLMHYQVADELADGRLVRLLKDYEPDYLPIQLVYPHSLQLSPRVRAF 282


>gi|307322609|ref|ZP_07601947.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306891747|gb|EFN22595.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 297

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 135/299 (45%), Gaps = 19/299 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  +A SGS T AA +L+ S  ++SR ++ LE +VG++L +R  R   L+E G  
Sbjct: 5   EDLEAFIHIAESGSLTRAATRLNRSLQAVSRSLTSLEVDVGLQLVHRTTRHSALSEAGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R       ++   Q+E       PSG LR+   +  G + L   + E++  YP  ++ 
Sbjct: 65  FYRRVKPAVLEIREAQLEAAGRRTGPSGILRVGAPMLFGPDFLVPIVAEYIESYPQAEVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D++ +  D  +R+   +  S+L  ++L  +    + AP Y      P    E
Sbjct: 125 LSLTDAFVDLASEGIDVVVRIAD-LPDSNLQSKRLGALRRVVFGAPSYFARNGRPEHPAE 183

Query: 186 LDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239
           L +H  I  T G+          W   +D   G+ R+       + N+  +I      G 
Sbjct: 184 LRQHACIVRTIGN------RPGQWAFQID---GKRRMVGVRGSFRSNAMAAIYSAVRSGL 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+   P + ++   D   +  ++++       ++  + E+ +   K++AF + + ++ R
Sbjct: 235 GLGYSPLWQIRHLVDAGQVEIVLQEFEPKPVPIHALWQESTRPPAKVRAFVDLLAMRLR 293


>gi|320323639|gb|EFW79723.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328278|gb|EFW84282.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 294

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 4   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 63

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +K +L  YP   + L++
Sbjct: 64  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVKAYLQRYPGTSVDLLI 123

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P S QEL  
Sbjct: 124 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGHCDSVVCASPAYLAMHGTPASPQELAA 182

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K + +F        P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 183 HNCLTY-SYFGKSLWEFT---RQQSPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 238

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  L+ ++ D    +  ++  Y      +  L+   +F+
Sbjct: 239 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 283


>gi|293608444|ref|ZP_06690747.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829017|gb|EFF87379.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 301

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 131/262 (50%), Gaps = 16/262 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+  A    ++ S++S+ IS LE  +G++L  R  R   LT +G + 
Sbjct: 11  ELAIFIRVVELGSFSAVARACDMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +    ++ + L+    EL++S      P G++RI T++    + L   +  F   YP I+
Sbjct: 71  YEQGIQILNNLD----ELEQSVTANHMPQGRIRIHTSLSYWTHFLLPCISLFNERYPQIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  L ++ I++     D AIR   P++SS+L+ R L     H   +P Y++    P   
Sbjct: 127 LEAHLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGRTQKHYVCSPTYIEKNGYPQHP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L +H L+     +    ++  WL    D+ I       L++N   +I+Q  + G+GIA
Sbjct: 186 EQLYEHQLLD----VSYQRQNKTWLFKKDDQEITLAPTKVLRINHGEAILQLALAGAGIA 241

Query: 243 LLPDYIVK---DNPNLVRIMED 261
            L  + VK   +   LV+I+ED
Sbjct: 242 QLNQFQVKKALEQKQLVKILED 263


>gi|260770545|ref|ZP_05879478.1| putative LysR-family transcriptional regulator [Vibrio furnissii
           CIP 102972]
 gi|260615883|gb|EEX41069.1| putative LysR-family transcriptional regulator [Vibrio furnissii
           CIP 102972]
          Length = 307

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 140/292 (47%), Gaps = 13/292 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR  SFT AA ++ ++++++S+ +  LE ++ ++L  R  R ++LT++G +L  + 
Sbjct: 14  FTHIARHRSFTKAASEMGVTRAALSQHLKALEQQLQVRLLNRTTRNMSLTDEGQRLLDIL 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 +E    EL ES ++PSG +RI+++    + L++ +L EFL  YP I+++L++D+
Sbjct: 74  HPSLTNIEQVVSELNESHIEPSGLIRISSSRTAARLLIEPHLGEFLARYPKIRLELMMDD 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              +I  +  D  IRL   +    +       +      +P Y K    P S ++L+ HN
Sbjct: 134 GFTNIVAEGLDAGIRLGVSLDEHMVAVPITPPLTTAIVGSPAYFKQHGIPQSPKDLETHN 193

Query: 191 LITFGDLIPKCMEDFNWLA------TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            + +       ++ ++  A      TV   + EP+ + +  + Y S++Q  + G G+   
Sbjct: 194 CLAYRFTSSGTLDHWSLTAPDSDQHTV---VFEPKGNAVFNDDY-SMLQAAIQGVGLVKH 249

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            D  V     +  L R++     P    Y   P       K++   +F+  K
Sbjct: 250 IDLWVHGAIQDGRLTRVLTPWCKPFPGFYLYIPSREHMPKKIRVLMDFLIEK 301


>gi|254473151|ref|ZP_05086549.1| transcriptional regulator [Pseudovibrio sp. JE062]
 gi|211957872|gb|EEA93074.1| transcriptional regulator [Pseudovibrio sp. JE062]
          Length = 313

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 144/290 (49%), Gaps = 13/290 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  SG F+ AA  +  S++ IS+ +S LE E+G++L  R  R ++LT+ G   
Sbjct: 6   RIRCFLQVVESGGFSAAARDMGRSKALISKYVSELEDELGVRLLNRTTRQISLTQVGEAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   E+  + +  +  +Q+   +  G+LR++      +  L   L  FL  +P +++ +
Sbjct: 66  FREAGELLQRFDDLKDAVQQDHREVRGRLRLSAPRSFSEATLGRVLASFLQEHPRVELDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            ++++ +DI  +  D AIR+ + ++ SSLI RK+  + +   A+P Y +    P    +L
Sbjct: 126 EMEDRFVDIVEEGYDVAIRVAE-LEDSSLIARKIRDVRVVVCASPAYWEAHGMPEKPGDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
              N+    D   K   ++ +L   +R   P+  P    + VNS  + +   + G G+  
Sbjct: 185 --ANMPCIIDTNYKHKTNWMFLENGERFSVPVKGP----MHVNSAKTAVAAALAGLGVVR 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP + V +   +  L+  +ED   P   +Y  YP     + K++AF +++
Sbjct: 239 LPIFYVLEELMSGQLIPALEDCEVPGPAMYAVYPHRRHLSAKVRAFVDYM 288


>gi|172063515|ref|YP_001811166.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996032|gb|ACB66950.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 303

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 134/290 (46%), Gaps = 11/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT +G+  +
Sbjct: 7   MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLRVRLLQRTTRRVALTAEGATYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+  +    ++   P G +R+        N +   L++F   YPD+++ L 
Sbjct: 67  ERCTRLLADLDDAETLFDDAGAAPRGVIRVDLPERFALNKVIPALQDFHARYPDLRVVLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P S  +L 
Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRIGELSQINCASPAYLARYGTPRSPDDLP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  +  G    +   + +W    D   G  +     S + VNS  + +  C+ G G+  
Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDTGALQTVKMRSVVAVNSSQAYLACCLAGLGLIQ 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P   +    ++ +LV ++ +       V   +P +     +++ F +++
Sbjct: 243 APREGLAPLLEDGSLVEVLPEWHAEPLPVSVVFPNSRHLAPRVRIFVDWL 292


>gi|159184411|ref|NP_353687.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159139724|gb|AAK86472.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 119/242 (49%), Gaps = 19/242 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA SGS + AA++L  S + IS++I  LE ++G +LF R  R ++LTE G   +
Sbjct: 7   LEVFASVAASGSMSLAAKELGYSPAVISKRIKRLEEKLGARLFQRTTRQISLTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   LE  +  +   +   +G L+++     G+  +  +LK F+  +PD+ + L+
Sbjct: 67  ERVLAVLAGLEEAEDFVSGRANTVNGTLKVSAPTSFGRMHIAPHLKGFMERHPDLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ IDI     D AIR+   + SSSL+ R+L  +     A+  Y+     P +I++L 
Sbjct: 127 LSDEFIDIIEGGYDLAIRIAD-LNSSSLVARRLAPVRRVLCASADYVVAHGMPATIEDLK 185

Query: 188 KHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           KH          +C+   N   W   ++ P G   I     L  NS   I +  + G GI
Sbjct: 186 KH----------RCLPAHNNDIW--RLEGPGGALSIRPEGMLVTNSSEVIREAVISGLGI 233

Query: 242 AL 243
           AL
Sbjct: 234 AL 235


>gi|323494873|ref|ZP_08099965.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323310837|gb|EGA64009.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 299

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 8/283 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSKVAEINNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LTSGAKNVKQAAQEAMDAVSGFGENVSGHIKMSVPSISGDLILADAVAEFCNLHPGLSVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+  Q+
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIARNGKPIEPQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   W    ++     R+S     ++  ++ +  + G GIA +
Sbjct: 183 LTLHNCLQYAYQTTGASE---WEFKSEQSNYIIRVSGSFSTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           P  +V     N  LV +  + +     +Y  YP   +   K+K
Sbjct: 240 PRCLVYHDIRNGQLVDLFPEQVGKKLGIYAVYPFTRQPPNKVK 282


>gi|319794740|ref|YP_004156380.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597203|gb|ADU38269.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 291

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 12/247 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L  F +VA +G    A+     S++++SR+I+ LE ++G++L  R ARGL LTE 
Sbjct: 1   MDLNALSDFALVAMNGGLGKASRASGRSKATLSRRIADLEEQLGVRLIERSARGLKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T    H++       +E    P G+LR+A+ +   Q  +     EF   YP++
Sbjct: 61  GQMLMDRTEGPMHEVADAMTSAREGLSVPRGRLRVASPVLFSQLTMGRISAEFCTAYPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             +++ D++ +D+  +  D AIR+  P   SSL+ R      +   AAP          S
Sbjct: 121 SCEVVADDRLVDLVEEQFDAAIRI-NPAPDSSLVGRCFAKDRLVVVAAP----------S 169

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +       +     ++    +D NW     R + EP I  L+++S+L I    + G+G A
Sbjct: 170 VPMPKPGKVSPVPGIVSTNFQDGNWTLDDGRLVLEP-IPRLRLSSFLMIRDAAIAGAGAA 228

Query: 243 LLPDYIV 249
           L+P  I 
Sbjct: 229 LIPQSIA 235


>gi|326319123|ref|YP_004236795.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375959|gb|ADX48228.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 302

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 123/301 (40%), Gaps = 19/301 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRV    AR GS T AA  L ++ ++ S  +  LE +VG++LF R  R L +T QG  L 
Sbjct: 9   LRVLVEAARGGSLTAAARALEVTPAAASAMLKRLEAQVGVRLFERSTRALRITAQGGTLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L+      Q  +    G +R+A   DL + LL      F+  +P +Q+ L 
Sbjct: 69  EYAERALELLDEGAGLAQSETGALRGTVRLAAPTDLSRVLLP-RFDRFMERHPGVQLALS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D+  D  D A+R    +  S L+ R L      A AAP YL     P    EL 
Sbjct: 128 ASDRLHDVRRDAVDLALRYSAELPDSQLVARALHRTRRLACAAPEYLARHGTPRHPSELA 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-------LQVNSYLSIMQYCVLGSG 240
            H  I    +      +  W  T +R  G P  +          V+       + + G G
Sbjct: 188 AHRCIA---MAIAGRREVRW--TFERAPGHPPETVGITLRAERSVDDGALAHAWALAGGG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I       V+   D+  LV ++   +  ++TVY   P       +++A   F+   A +W
Sbjct: 243 IVYKSRLDVQAHLDSGQLVELLPGWLGQAYTVYAVLPSQRFVPARVRALVEFL---AEEW 299

Query: 298 K 298
           +
Sbjct: 300 R 300


>gi|76810635|ref|YP_332567.1| LysR substrate binding domain-containing protein [Burkholderia
           pseudomallei 1710b]
 gi|126438962|ref|YP_001058046.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|134281239|ref|ZP_01767948.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|226194419|ref|ZP_03790017.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242314530|ref|ZP_04813546.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|76580088|gb|ABA49563.1| LysR substrate binding domain protein [Burkholderia pseudomallei
           1710b]
 gi|126218455|gb|ABN81961.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|134247545|gb|EBA47630.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|225933504|gb|EEH29493.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242137769|gb|EES24171.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 349

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 16/262 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 36  FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 95

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E    +  P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 96  AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 154

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 155 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 213

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +LD+HN I         P   E+   L         P    L +    SI +  V G G+
Sbjct: 214 DLDRHNCIGLSGNAKAWPFVAEEGQRLL--------PSAGNLLLGDNESIREAAVSGLGL 265

Query: 242 ALLPDYIVK---DNPNLVRIME 260
           A L  + V    D   LV ++E
Sbjct: 266 ARLARFHVDADLDAGRLVPVLE 287


>gi|298487058|ref|ZP_07005109.1| Probable transcription regulator protein of MDR efflux pump cluster
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298158411|gb|EFH99480.1| Probable transcription regulator protein of MDR efflux pump cluster
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 133/287 (46%), Gaps = 13/287 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF  +A  GSFT  AE   + +  ++R I  LE  + ++LF R  R + LT +G + 
Sbjct: 6   SMQVFAKLAELGSFTKVAEATQIGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRF 65

Query: 67  H-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + RV + +    ETT +  +  S    G LRI       Q     +LK F   +P+I++ 
Sbjct: 66  YERVKNNLADLAETTSMFDRNGSTL-RGLLRIDIPAAFSQRSFMESLKGFTQAFPEIELA 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  DCA+R+ + +  SSL+ R++    M   AAP YL+    P ++ E
Sbjct: 125 LGVTDRTVDLVAEGIDCALRIGE-LPDSSLVVREIGRATMVTCAAPSYLQAFGTPETLDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H  ++F  L  +      W   L   D P+  P    + VN   + +Q  + G GI 
Sbjct: 184 LAGHCGVSF--LSGQSNRPLPWHFSLNGDDFPV--PPRGGITVNESNAYVQCGLAGFGIL 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             P   V+    +  LV ++E        V   YP       +++AF
Sbjct: 240 QAPGITVESFLASGELVEVLEAFRPLPRPVSVLYPSRTHLAPQVQAF 286


>gi|254251907|ref|ZP_04945225.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124894516|gb|EAY68396.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 324

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 136/300 (45%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  +       +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGELFYQHCQAMLAEARAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLRRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L     P
Sbjct: 125 VKVHIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLNQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L   +L K   +    +  + +  FN +A    P G       +PR   L     ++I +
Sbjct: 185 LVPDDLAKFETLDTPSVDGRHV--FNLIA----PDGTRHLHEHDPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292


>gi|115352291|ref|YP_774130.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282279|gb|ABI87796.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 325

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 139/300 (46%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L     P
Sbjct: 125 VKVHIRVTNRVIDLFEDSVDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L   +L +   +    +  + +  FN +A    P G       +PR   L     ++I +
Sbjct: 185 LVPDDLARFETLDTPSVDGRHV--FNLIA----PDGTRHLHEHDPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIME-DVITPSFT--VYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +     N +R  +   + P +T  V   Y   +   G   A R F+
Sbjct: 236 AVLDGLGIAALPEMMYG---NALRAGQLSPVMPGWTLPVPQLYAAFVSRQGMPPAVRAFV 292


>gi|134293313|ref|YP_001117049.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136470|gb|ABO57584.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 319

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 138/290 (47%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           S +WD LR F  VAR+   + AA++L +  ++++R+I  LET +G  LF +  + G TLT
Sbjct: 11  SLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALETAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   +L  +    SG +RI +T   G   L   L +F + +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQLANTGHALSGHVRIGSTEGFGCFFLAPQLAQFRVAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +   ++  KL    +  YA   YL N    
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATRDYLANHPPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  +L +H  I++ D +    E    L  ++R +     + L+  S ++ +   + G  
Sbjct: 190 ASTDDLARHAFISYVDDLAFSSE----LLYLERAV-PGATAGLRTTSVIAQVFAALQGGA 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++    P LV ++   +  +   +    E L+   ++ A  +++
Sbjct: 245 LAILPCFMAATQPALVPVLPHDVVVTRCFWLTCREDLRKLRRVTALWDYL 294


>gi|322834695|ref|YP_004214722.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169896|gb|ADW75595.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 312

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSFT AA +L +S S+IS+ IS LE ++ IKL  R  R + LTE G   
Sbjct: 6   RMSIFAQVVESGSFTAAARRLDMSVSAISQTISKLENDLQIKLLNRSTRSIGLTEAGKLY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   ++ H +     +L   +  P+G LRI ++  + QN+L     E L  YP + + L
Sbjct: 66  YQGCRKMLHDVREVHEQLYAFNNTPTGTLRIGSSSTMAQNVLAAMTAEMLTEYPGLTVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL   +L ++ M   AA  YL     P      
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFCTRLGSMPMVVCAARSYLAQHGTPEK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISC---LQVNSYLSIMQ 233
                       P  M +F+WL    RP  E           RI+       N   ++++
Sbjct: 181 ------------PADMVNFSWLEYSVRPDSEFELIAPEGVSTRITPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G GIA +P
Sbjct: 229 WLKAGVGIAYVP 240


>gi|264678676|ref|YP_003278583.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262209189|gb|ACY33287.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 308

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 131/297 (44%), Gaps = 10/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+  R +  V   GS + AA  + ++Q ++ R +  LE  +G+ LF R   GL  TE 
Sbjct: 17  IGWELYRSYLGVLEEGSLSGAARAMGIAQPTVGRHVDALEKALGVTLFTRSQMGLLPTEA 76

Query: 63  GSKLHRVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
              L      ++      +   E Q S ++  G +R+  +  +GQ +L   L +    +P
Sbjct: 77  ALALKPFAQTMHSAAAALRRVAESQGSGIQ--GTVRVTASEVIGQEVLPPILAQLQDTHP 134

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L+L ++  D+    AD A+R+ +P Q   LI R++  + +  +A   YL     P
Sbjct: 135 GLTVELVLTSRVQDLLQREADIAVRMTQPRQ-EQLIARRIGVMPLGLHAHKRYLDKHGTP 193

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L +H LI F +  P     F   A    PI       ++ ++ ++ M     G G
Sbjct: 194 ASLADLAQHALIGFDEEAP-----FVRAARKAFPIWSRENFAVRTDNDMAQMALIRAGCG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I +    +   +PNLV I+   I  S   +    E L+N    K   + +    +D+
Sbjct: 249 IGVCQVNLAARDPNLVNILPGSIPLSLETWLTMHEDLRNNPSCKVTFDALLKGLQDY 305


>gi|260461471|ref|ZP_05809718.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259032541|gb|EEW33805.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 302

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 137/289 (47%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ ++ F  VA +GS + AA +L  SQ ++ R IS LE  +G+ LF R   G  LTE 
Sbjct: 4   IDWNLIKSFVTVAETGSLSAAARKLSASQPTLGRHISELEQALGVTLFRRGRSGYALTEA 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L      V  +     +  Q S     G +RIA +  +   +L   +    +  P I
Sbjct: 64  GATLFERGKTVSEQASAFSLLAQGSVEAIEGTVRIAASEVVAAYVLPQMMARLDIEEPGI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++++  N+  ++    AD AIR+ KP Q + L+ RK+  I + A AA  YL     PL 
Sbjct: 124 EVEIVASNQVENLLRRDADIAIRMVKPAQ-NELVARKVCDIPLCACAAISYLDRRGRPLE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +L  H LI F D   + +  F     V   I   R S   + ++ + + +    G+GI
Sbjct: 183 PGDLVDHALIGF-DRSDEMIRGF-----VQAGIPVTRNSFRFRADNQMVLWEAVRAGNGI 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  + + + +P + +++  +  P+  V+      ++ + +++   +F+
Sbjct: 237 GLGQEPLAERDPLVEKVLPGLPLPALPVWLAMHRDVRTSVRIRRVADFL 285


>gi|254500724|ref|ZP_05112875.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222436795|gb|EEE43474.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 314

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 134/290 (46%), Gaps = 16/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + A  +++LS + +S++I  LE ++G +L  R  R + +TE G   +
Sbjct: 7   MEIFARVVSAGSMSAAGREMNLSPAVVSKRIRRLEEKLGSRLLQRTTRQIAMTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S K  G L++A     G+  +  ++ +FL   PD+ I L 
Sbjct: 67  ERVIAILASVEEAESFVSRGSAKARGHLKVAVPTSFGRLHIAPHVGKFLANNPDLSINLD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE-L 186
           L +  +DI  +  D AIR+ + +  SSL+ R+L  IH    A+P Y++    P SI + L
Sbjct: 127 LSDDFVDIVGEGYDLAIRIAE-LSDSSLVARRLAPIHRILCASPEYVEKYGTPQSIDDLL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +   +  P  +   N + TV         S ++ NS   + +  + G GIAL   
Sbjct: 186 ANHVTLAAANQDPWRLAGPNGIETVRTQ------SPVKTNSSEVVRECLLSGVGIALRST 239

Query: 247 YIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
           + +   P L      ++ P +       +Y  YP       K++ F +F+
Sbjct: 240 WDI--GPELREGKLQILLPEYRASKDVGLYAVYPSRQFLPAKVRVFIDFL 287


>gi|190572834|ref|YP_001970679.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190010756|emb|CAQ44365.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 123/279 (44%), Gaps = 17/279 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A +GSFT AAE+LHL+ S++ + I+ LE  +G +LF R  R L LTE G   +
Sbjct: 10  IEAFVATADAGSFTAAAERLHLTSSAVGKTIARLEARLGARLFERSTRRLRLTEAGEGFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    V  +L   +  L   +  P G+LR+      G+  +   L +    +P +  Q+ 
Sbjct: 70  RTCVRVLGELADAESVLVSHADAPVGRLRVDAPATFGRLKVWPLLLQLAAEFPQLHPQVT 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186
             ++  D++ D  D A+R+  P    + +  +L+      + A+P YL    +P S  EL
Sbjct: 130 FSDRFSDLAEDGVDLAVRIGGPEPLPATLGSRLLGYECLRFCASPAYLLRHGQPRSAAEL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ------VNSYLSIMQYCVLGSG 240
             H+ + FG    +           D   G  R + LQ      V S  + +     G G
Sbjct: 190 AGHDGVLFG----RADGSIGPWQVAD---GRQRSTPLQARARLVVGSAEAQVAAVEAGFG 242

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           IA L  ++V D     +LV I+  +      +   +P+ 
Sbjct: 243 IAQLATWLVDDALARGSLVSILPSLDCRGLPLRLLWPQG 281


>gi|162456046|ref|YP_001618413.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161166628|emb|CAN97933.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 345

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L++F  VA  GSFT A E L + ++ +S ++  LE E+G +L  R  R + LT
Sbjct: 43  MTVDVGSLKIFVKVAELGSFTRAGEHLGMPKARVSLRLKALEAELGTRLLQRSTRVVRLT 102

Query: 61  EQGSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G +L  +       LE  ++  + +++    G++RI   ++  ++++   L E L  +
Sbjct: 103 PDGEEL--LPRARRLALEADELGAMFQAARGLRGRVRIDLPVNFARDVIIPRLPELLARH 160

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++++ L   ++ ++   +  DC +R+  P     L+ R+L  + M   A+P YL+    
Sbjct: 161 PELEVLLSTTDRRVEPLREGFDCVLRVGAP-GGDGLVGRRLGLLRMMNCASPSYLRQYGT 219

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLG 238
           P  I++LD+H L+ +   +      F +    D    E P  S + VNS  +    CV G
Sbjct: 220 PRRIEDLDRHLLVHYSTTLGAEAPSFEY--PHDGGYREWPMRSVVTVNSADAYFAACVAG 277

Query: 239 SGIALLP 245
            GI   P
Sbjct: 278 LGIIQAP 284


>gi|34496170|ref|NP_900385.1| transcriptional regulator PtxR [Chromobacterium violaceum ATCC
           12472]
 gi|34102024|gb|AAQ58391.1| transcriptional regulator PtxR [Chromobacterium violaceum ATCC
           12472]
          Length = 312

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 8/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L++F  VA +G FT AAE+L ++++++S Q+  LE ++G  LF R  R + LTE G
Sbjct: 18  NLEGLQIFVAVAEAGGFTAAAERLGMTKANVSLQVGRLEAQLGATLFTRTTRRVKLTEAG 77

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+         L    ++    + + SG LR+   +      +     +F+  +P +Q
Sbjct: 78  QALYLDAQPALAALRDALLQAGHGAAELSGTLRLTAPVSHMAESVAPAATQFIRRHPGLQ 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  D AIRL   ++ SSL   KL        A+P YL+    P   
Sbjct: 138 LELHAIDRMVDLVAEGMDLAIRL-GTLRDSSLRALKLGEFAQQLVASPAYLRERGMPAHP 196

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL  H+ +    L       F      +  +   R+   ++V+S  S+    + G+G++
Sbjct: 197 GELAGHDWVALTLLKTPLTWRFAGAGGAEETV---RMRARIKVDSAASLRSLLLAGAGMS 253

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +L  + V+++     L+ ++     P   VY  +P         +AF  F
Sbjct: 254 VLDSFSVQEDLRQGRLIHLLPQWTLPKGGVYAVFPPGRHAPAAARAFVEF 303


>gi|53719562|ref|YP_108548.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|167816079|ref|ZP_02447759.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|52209976|emb|CAH35949.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
          Length = 301

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 138/302 (45%), Gaps = 14/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+  P+      W      P      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGEQ-PR----VEWRFDGSHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
              + V   P+L      R++ +  + +  ++  YP       +++ F +++ ++  R W
Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 296

Query: 298 KF 299
           ++
Sbjct: 297 RW 298


>gi|330816140|ref|YP_004359845.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327368533|gb|AEA59889.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 321

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 125/293 (42%), Gaps = 14/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  VA SGSF+ AA  L  S + +SR +S LE  +  +L  R+ R + LTE G + 
Sbjct: 6   NMSVFVRVAESGSFSGAAAALQRSTAQVSRAVSDLEAHLNTRLLNRNTRRVALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            R   ++   LE  + EL   +    P G+LRI +    G + +   + EF+  YP I I
Sbjct: 66  LRHCRKILADLEFAEAELLTDQPPQVPRGQLRIHSMTSFGTHYVMPLVAEFMRAYPQISI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L  + +DI  +  D  + +        ++ R+L  I     A+P YL     P +  
Sbjct: 126 DLTLSQRSVDILNEMYDGTLTISDMPAGDGIVSRRLGEISCIVCASPDYLAAHGVPRTPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSG 240
           +L  H  +    L    M   +W      P G  ++   Q    VN   S+      G G
Sbjct: 186 DLQAHTCL---HLRSPGMPFSDW--QFSGPAGIEQVRFEQHPFVVNVAASMAVAVEQGMG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +LP  I         L R++     PS  V   +P   + + +L A+  F+
Sbjct: 241 VGILPAPIALGGLRKGTLRRLLPAYTMPSMLVELAHPARAQLSPQLGAWIAFL 293


>gi|299069657|emb|CBJ40930.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 329

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 21/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LE  +G++L  R  R + +T+ G
Sbjct: 16  DLNDLVLFAAVVTHGSFSAAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           S  +    EV  +     +E+ E +  +PSG+LR++  + +    L   L +FLL  P++
Sbjct: 76  SAFY-AQCEVMTQAARAALEVAEHAGERPSGRLRVSCPVGVAHAFLAPVLSKFLLAQPEV 134

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L + N+ +D+  +  D A+R+R  +  S+L+ R     ++   A+P ++       S
Sbjct: 135 RLELDVTNRRVDVIGEGYDVALRVRSTLDDSNLVVRTFTASNLVLAASPSFVAGHGPFDS 194

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + L     +          E   W       ATVD       +     +    + Q  +
Sbjct: 195 AESLQGVAGVG---FGGVGGERARWRLTSPEGATVDIDY----VPAFVTDDLFLLGQVAM 247

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+A LP  +  D   +  LV ++ D   P   ++  +P      G + A R FI
Sbjct: 248 AGVGVAQLPVNLCADAIRDGRLVVLLPDHRQPVHQLHAVFP---SRRGLVPAVRAFI 301


>gi|167839047|ref|ZP_02465824.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 6/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF  AA++L +SQS+I+RQ++ LE ++G +L  R  R L++T+ G    
Sbjct: 7   MRSFVQVVDDGSFVRAADRLGISQSAINRQVTLLEQQLGERLLIRKTRELSVTDFGRSYC 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  KL+  +  +   + +P+G LRIA    L    L   L ++   Y D+    +
Sbjct: 67  ARIRDILKKLDALERAVLAPTRRPAGTLRIAVLASLSLEHLASCLYDYCKTYSDVLPMPV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D+  +  D  I  R  +  +SL+ R +      A A+P YL    EP   ++L 
Sbjct: 127 LVDRPTDLVREGYDVGIIDRSSVSCTSLVVRTIYNTPRIACASPAYLTRHGEPTRPEQLT 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H  +T            +    V  P G   + C   L VN+   ++Q  + G+GI  +
Sbjct: 187 DHVCVTMSAARVSGTRHTHSEMLVTGPDGSTMLKCRPALVVNNVDFLVQMILSGTGIGFV 246

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +V+       L  ++    +P  T+   YP       K++ F + + 
Sbjct: 247 EPALVRSAIQKGTLKPLLPGYSSPGPTICVAYPSRHHLPPKVRTFVDHLL 296


>gi|167570187|ref|ZP_02363061.1| transcriptional regulator [Burkholderia oklahomensis C6786]
          Length = 313

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP++ + L
Sbjct: 66  LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYQQRYPEVHVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++N   P   ++L
Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGVTFSVVCASRGYIENHGAPQRPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             H  +  G + P    D  W   +  P GE  ++      +VN   ++      G GI 
Sbjct: 186 ANH--VCLGMVAPGLYWD-EW--KLMGPRGEESVTLAPPPFRVNVAEALAAGIREGMGIG 240

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y       N + VR+M +  +    +Y  Y           A R ++  K R W
Sbjct: 241 VLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287


>gi|146308226|ref|YP_001188691.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576427|gb|ABP85959.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 309

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 136/289 (47%), Gaps = 12/289 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  SGS + AA +L  ++S +S++I  LE  +G  L  R  R   LTE G   
Sbjct: 6   EMHAFVAVVDSGSISEAARRLGTAKSMVSQRIQQLEKRLGCILLER-GRQTRLTEAGEVF 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R  + +   +E  +  +  S     G LRIA  +  G   L   L  F   YP++ + +
Sbjct: 65  YRHCTAILADIENAENAVLTSQSSVRGNLRIAAPMAFGMRYLTPILASFAKQYPELYLDV 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQE 185
             D++ +++  +  D A+R+ + +  SSL+  K++T + H   A+P YL     P + Q+
Sbjct: 125 EFDDRRVNLHEEGFDAAVRIGE-LPDSSLVA-KIITPNRHIICASPDYLDAHGTPRTPQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H  + + +  P  M    W   V+  +   R+ C ++ N    +M     G G+A+L
Sbjct: 183 LAQHFGMLYVNREPHGM----WTLPVNDTLESFRVRCRMRTNCGHQLMDAAKAGLGLAIL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++      +  L+ ++E        +   Y ++ + + KL+A   F+
Sbjct: 239 PTFLAAQAIVDGELIEVLEPYAPRGGNISVVYRQSQRASPKLRALSGFL 287


>gi|330821046|ref|YP_004349908.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373041|gb|AEA64396.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 329

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 15/243 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F   AR  SFT A ++L ++QS++SRQ+  LE ++ ++LF+RH R L+LTE G  
Sbjct: 14  DFLRGFESAARHLSFTRAGQELDITQSAVSRQVKALEEQLSVELFHRHIRALSLTEHGRV 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S    ++E          V+ S  + ++TT+      L   L  F   +P+I + 
Sbjct: 74  FYAAISGALAEIEAAIWSFSSGGVRRS--ISLSTTVPFAALWLIPRLGSFTTRHPEIDVH 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    +  D+S    D  +R   P + S    R L   H+ A A+P      R P   ++
Sbjct: 132 VSTARESEDLSRKRLDLVVRF-VPARMSLAQARPLFHEHVVAVASPALAATLRAP---RD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEP---RISCLQVNSYLSIMQYCVLGSG 240
           L++H L+   D      +++ WLA  +    +G P   ++  L    Y  ++Q  + G G
Sbjct: 188 LERHVLLHVAD----AGDEWPWLAWKSFLSMLGVPPLRQMRTLHFTQYDQVIQAALDGHG 243

Query: 241 IAL 243
           +AL
Sbjct: 244 VAL 246


>gi|325277495|ref|ZP_08143098.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097382|gb|EGB95625.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 277

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 133/277 (48%), Gaps = 16/277 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  +GSFT AA++L +S+ S+SR++  LE  +G++L  R  R L  T  G 
Sbjct: 4   YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEARLGVRLLNRSTRRLDATPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++    +  +++  + ++   +    G LR++  +      L   L EFL L+  + +
Sbjct: 64  QYYQSAMRLLGEVQQVEHDISGQAQALRGTLRLSAPLSFAMAHLGCLLTEFLQLHAQVDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++  +     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLIGEGYDLALRI-GALEDSSLIARRIADVQRVYCASPAYLAARGVPARPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           +L  H+ + +G           W     R  G+ +       ++ N+   +    + G G
Sbjct: 183 DLAGHDCLPYGH-----SRQVQWQF---RQAGKAQAIQVAGRMRANNGEILRDAAIAGMG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           +  LP +IV     +  LV +++D   P+  +   YP
Sbjct: 235 VTYLPTFIVGQALADGRLVTVLDDWRPPALQLSAVYP 271


>gi|269102362|ref|ZP_06155059.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162260|gb|EEZ40756.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 306

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  SFT AA+ L +S++ +S+QI  LE  +G++L  R  R   LTE G   
Sbjct: 7   QMVVFNALTKQQSFTKAAQLLDISRTQVSKQIQLLEERLGVQLVQRTTRSFALTEAGKAF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +  ++   + EL        G L++        N L   + EF   YP +++++
Sbjct: 67  AAHCANIVAEINEAESELLSDCDTLQGTLKVGVAQSFASNHLAPYIAEFHAQYPQLKLEM 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +DI  +  D  I +         + R LV  H    A+P YL     P   ++L
Sbjct: 127 SLFDHRVDIIAEQLDLWIGMMDS-PPEGFVARHLVDCHFVLAASPEYLALHGVPYHPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN IT+     +  +D  W    D    + ++S   +V+S  +I    + G+GI  L 
Sbjct: 186 KEHNCITY---FSRERKDNVWSFKKDDEALQIKVSGNYRVDSADAIRDATLTGNGIGYLA 242

Query: 246 DYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y++KD      L+R++ D  +     +Y  YP       K++AF +F+
Sbjct: 243 TYLLKDELRQGKLIRLLPDWDLNQYMPLYAVYPRHKFLPIKVQAFIDFV 291


>gi|149915438|ref|ZP_01903965.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810727|gb|EDM70568.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           AzwK-3b]
          Length = 293

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 139/304 (45%), Gaps = 26/304 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AAE L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAFNVARIGTVSGAAEVLGVHHATVIRHIDALEQRLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       ++      SG+L + T++    +LL   L EF   +PDI 
Sbjct: 63  EDLLRVAQATDDQFSQLVGRIKGRGNDVSGEL-VVTSLGGLSHLLVPVLTEFQAEFPDII 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQ----RKLVTIHMHAYAAPHYLKNCR 178
           ++ +  ++   +    A  AIR    P Q  +++Q    +K+      AYAA H L    
Sbjct: 122 VRYLTGDRLFRLEYGEAHVAIRAGAVPDQPDNVVQPFFEQKITLFASDAYAARHGL---- 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMED-FNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            P S  E+  H  +   D  P      F W+  T+  P          V++    ++   
Sbjct: 178 -PQSEAEMSGHRFVGADD--PNSRAPFFRWMRETI--PAANIVFRSGDVHAQRRAIKQ-- 230

Query: 237 LGSGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+GI  +     ++   L+ ++   ED   P + V       L  T K+++F +F+  +
Sbjct: 231 -GAGIGFVSRLQAREMGGLIEVVPPREDWAAPLWLVTHM---DLHRTTKVQSFLSFLKNR 286

Query: 294 ARDW 297
           ARDW
Sbjct: 287 ARDW 290


>gi|288961631|ref|YP_003451941.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288913911|dbj|BAI75397.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 296

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 129/297 (43%), Gaps = 16/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R+F  VA +GSF   A  +HLS  +++R ++ LE  +G +LF R  R + LTE G 
Sbjct: 4   WQAMRIFAKVAETGSFAETARLMHLSAPAVTRAVASLEDVIGARLFVRTTRSVKLTEAGI 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +   +   +     S   P+G L I  +   GQ  +   + EFL ++P ++ 
Sbjct: 64  RYFEDCRRILADIAEAEAAAGGSYANPAGTLAITASALFGQMHVLPIVTEFLDIHPAMRA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +  ++ ++I  +  D A+R+   +  S     K+ T+      +P Y +    PL+  
Sbjct: 124 RTLFIDRPVNIVEEGVDVAVRIGH-LPDSGFTAVKVGTVRRVICGSPAYFERHGAPLTPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGI 241
           +L  H +               W +   R  G+ R++    LQ N+  + +     G G+
Sbjct: 183 DLRNHRI---------AASTSAWASPEWRFAGDQRVTIDLVLQCNTNEAAIATAREGWGL 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y +     + +L  ++ +   P   ++  YPE      K++AF +    + R
Sbjct: 234 TRVLHYQIGPALLDGSLRIVLSEHEEPPLPIHVLYPEGRHAPAKVRAFVDLAVARLR 290


>gi|157376747|ref|YP_001475347.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319121|gb|ABV38219.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 316

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 140/289 (48%), Gaps = 11/289 (3%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSFT AA+  ++ +S IS+QI  LE E+ ++L  R  R L+LT  G+++ +    +   L
Sbjct: 17  GSFTKAADLRNVDRSVISKQIGKLEDELDVRLLNRTTRSLSLTTAGAEMVKQAVSLREML 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
             T    Q    +P G LRI+++   G+  +Q  ++ F   Y  I ++L L+++ +D+  
Sbjct: 77  SETSRIAQHYHSEPRGTLRISSSTFFGRQYVQKAVEVFQRKYHQIHVELRLEDRVVDMVS 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           +  D   R+ +P + SSL+ RK+    +   A+P +LK  +EPL+I+ L++     +   
Sbjct: 137 EGFDIGFRIGEP-KESSLVARKIARNRLLIVASPDFLKRHKEPLTIEALEQLPTAVYS-- 193

Query: 198 IPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NP 253
            P  + D       +      ++    +VN    ++   + G+ +A++    +++     
Sbjct: 194 APGILLDKIKYFDAEGEAAHIQLDIAYRVNDVEMMVMAALSGNMLAVVTAQTIENEVLEG 253

Query: 254 NLVRIMEDVITPSF-TVYFCYPE---ALKNTGKLKAFRNFIFLKARDWK 298
            LV IM DV    F T Y  YP    A+K T  ++  R  I      W+
Sbjct: 254 KLVPIMTDVNLADFGTFYAVYPHREPAIKTTLFIETLREIIGADIPVWE 302


>gi|238758281|ref|ZP_04619459.1| Transcriptional regulatory protein [Yersinia aldovae ATCC 35236]
 gi|238703404|gb|EEP95943.1| Transcriptional regulatory protein [Yersinia aldovae ATCC 35236]
          Length = 284

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 123/278 (44%), Gaps = 6/278 (2%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
           +V R  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G +L      
Sbjct: 1   MVVRERSFTKAAAKLGVSQSALSHSIRGLEDRLELRLLTRTTRSVAPTEAGERLANSLGP 60

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
            + ++E+    L E   +P+G +RI        ++L   LK FL+ Y DI +++ +DN  
Sbjct: 61  RFAEIESELNALSEMRARPAGNIRITAGEHAVDSILWPVLKSFLVEYSDINVEITVDNTL 120

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
            DI     D  IRL + +    +  R    + M    +P YL     P++  +L  H  I
Sbjct: 121 TDIVTGRFDAGIRLGEQVAKDMIAVRIGADMSMAVVGSPSYLAKYDIPVTPADLQNHRCI 180

Query: 193 TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
                +P     + W      R +       L  NS    +    +G G+ ++P   VK 
Sbjct: 181 NM--RLPTMDGLYAWEFEKAGRELKVRVDGQLTFNSLRQRIDAATIGFGLTMVPADTVKT 238

Query: 252 ---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              + +L+R++E+   P    Y  YP   ++T     F
Sbjct: 239 EIADGSLIRVLEEWCEPFPGYYLYYPSRRQHTTTFSLF 276


>gi|209548055|ref|YP_002279972.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533811|gb|ACI53746.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 283

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 19/247 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  L++F  +AR G+   AA  L L+Q ++ R++  LE  VG  LF R   G  LTE+
Sbjct: 1   MEWSDLKIFLAIARFGTLGAAARSLRLTQPTMGRRLRSLEASVGQTLFQRTTEGFVLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ +      +  +    +  L   S +  G LR++++   G ++L   L EF  L+P +
Sbjct: 61  GAAVLAGAERIEEETLAMERILAGGSRQLGGFLRLSSSDWFGAHVLSPVLAEFSQLHPKV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY---AAPHYLKNCRE 179
            ++L+ D++ + +    AD   R+ +P   + +I RKL+ I    Y    APH       
Sbjct: 121 VVELLTDSRLLSLPRREADLVFRI-QPFTEAEIISRKLIHIKYGLYIRRGAPHPRAFDGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
              +  +D+     FGD     M D  WL  +      PR    ++ NS       C  G
Sbjct: 180 GARLVTMDQ----AFGD-----MPDAGWLQRL-----LPRAEIAMRSNSRDVQATLCANG 225

Query: 239 SGIALLP 245
           +G+A+LP
Sbjct: 226 AGLAVLP 232


>gi|148553478|ref|YP_001261060.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498668|gb|ABQ66922.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 301

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 5/197 (2%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           +  D D+ R   +F  VA  GSF+ A  +L L+ S++SR I  +E  +G++L  R  R L
Sbjct: 5   IGGDTDRARALELFAAVAAEGSFSAAGRKLGLTPSAVSRAIDRIEARLGVRLLLRTTRAL 64

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT +G         +   L+  +  + +    P G+LR++ ++  G+  +   L +F+ 
Sbjct: 65  TLTVEGQAYLGAARRILADLDDAEQAIADQGA-PRGRLRVSVSLAHGRQCVVPLLGDFVR 123

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           L+P I + + L ++ +D++   AD AIR   P+  S+L  RKL        A+P YL   
Sbjct: 124 LHPHILVDVGLTDRVVDVAGGQADVAIRF-GPLADSALTARKLGETRRVIVASPDYLARH 182

Query: 178 REPLSIQELDKHNLITF 194
             P   ++L  H  + F
Sbjct: 183 GTPSVPEDLHDHVCLNF 199


>gi|150376589|ref|YP_001313185.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150031136|gb|ABR63252.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 297

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 127/279 (45%), Gaps = 17/279 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VAR  SFT AA  L  SQS++S  I  LE  +G++L  R  R +  TE G
Sbjct: 5   DMKDLLWFLEVAREQSFTKAAAALGTSQSTLSYTIKQLEARLGVRLLTRTTRSVATTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     L     KPSG +R+  +    Q  +   L   L  YPDI+
Sbjct: 65  ERLFQSLAPRFQQIEADLAALVAFREKPSGTVRLTLSDHALQTTVWPKLSRVLSDYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  DN   +I  +  D  +RL + +    +  R      + A A+P Y      P + 
Sbjct: 125 LELYSDNGMSNIVEERFDAGVRLGESVDKDMIAVRISPDWRLRAVASPEYFTKHGIPTTP 184

Query: 184 QELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
           Q+L  H  I     T+G         ++W    D      R+   L  NS ++ ++  + 
Sbjct: 185 QDLVGHVCINMRQATWGGF-------YSWEFEKDGRELRVRVDGQLSFNSSITQVEAALE 237

Query: 238 GSGIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCY 273
           G GIA +P+ +V+++  + R   +++D   P FT Y  Y
Sbjct: 238 GYGIAYVPENLVEEHLAVGRLRAVLDDWSQP-FTGYHLY 275


>gi|115361082|ref|YP_778219.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286410|gb|ABI91885.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 299

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 129/283 (45%), Gaps = 23/283 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR GSF  AA      ++++SR+++ LE  + ++LF R +RG+TLT++G  L+  T
Sbjct: 9   FNLVARHGSFGEAARAAGRPKATLSRRVTELENSLALRLFERGSRGVTLTQEGRALYERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  +   +     +P G+LRI+  +      +   +  F L YPD+++++  ++
Sbjct: 69  GALLAELADSASAIASRGERPHGRLRISAPMLFSHFAMGKLVATFALKYPDVRVEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQR-----KLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D+  +  D  IR+  P    SLI R     +LV +   A A P    +   P  ++ 
Sbjct: 129 RPVDMIDEGYDLVIRV-NPDPDESLIGRVFLRDRLVVVATPALARPS--GDAAAPAVVRG 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            D            +   D    A   R   EP     +++S + +     LG G A LP
Sbjct: 186 TDDR----------RAAWDVTGPAATSRIAIEP---VARLSSLIMVRDTVRLGLGAACLP 232

Query: 246 DYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286
             +V  +     ++   DV  P   ++  YP     + ++ AF
Sbjct: 233 VSLVSGDLAAGTLVSWGDVPGPDIALWALYPSRRLLSARVSAF 275


>gi|323494653|ref|ZP_08099756.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           brasiliensis LMG 20546]
 gi|323311086|gb|EGA64247.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           brasiliensis LMG 20546]
          Length = 294

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AA    LS + I + +S LE  +G +L +R  R  +LTE G   +
Sbjct: 7   MKVFAYVVEHGSFRSAAHHFDLSATMIGKHVSFLEQSLGTQLIHRTTRKQSLTEAGKIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   +   +  +Q    +P G +++   +  G+ +L   + +FL  YPDI ++LI
Sbjct: 67  QECHRIIEDITNAENLIQTLVNRPIGTVKVNCPVTYGKKVLAPVVADFLAQYPDINVELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN  ID     AD  IR+ + +  SSL+ R+L    M   AAP YL    +  S+ +L 
Sbjct: 127 LDNNLIDPFRSEADVIIRIGELV-DSSLVARRLGDYQMTYCAAPEYLDKYGKIDSLDDLS 185

Query: 188 KHNLITF 194
           +H+ + F
Sbjct: 186 QHSCLGF 192


>gi|319792995|ref|YP_004154635.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595458|gb|ADU36524.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 301

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 137/296 (46%), Gaps = 20/296 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSF+  A+QL L +S++S+ I+ LE  + IKL  R  R +T T  G + +
Sbjct: 7   MRAFVRVVDTGSFSRTADQLALPRSTVSKLITDLEKHLNIKLMQRTTRAVTPTSDGIEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++++ +  ++   VKPSG LRI        +LL   L +F   YP+I + + 
Sbjct: 67  GHAMRWIAEMDSVESAVRGKKVKPSGHLRIDAPAVFANSLLIPELPDFHREYPEITVAVG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ + I  +  DC IR  + +   +++ R++  +     AAP YL     P S ++L 
Sbjct: 127 ISDRPLKIVEEGVDCVIRAGR-LDDMAMVGRRVTELQYVTCAAPAYLDCKGIPSSPEDLQ 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRI---SCL-QVNSYLSIMQYCVLGSG 240
            ++      F    P+       L   +R  G  R    +C+   N    + +  + G G
Sbjct: 186 LNHAAACYFFSTGKPE-------LLIFER--GNERFEIGNCVFSTNEGNGLKEMLLAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +      IV+   D+  LV ++ED   P+   +  YP       +LKAF +++  K
Sbjct: 237 VGQHFRRIVQPYLDSGELVAVLEDWSRPAMPFHILYPPNRHQNARLKAFADWVVQK 292


>gi|330816505|ref|YP_004360210.1| putative transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327368898|gb|AEA60254.1| putative transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++  F  VA +GSF+ AA +L  + S++SR I+ LE  +G +L  R  R L L+++G +
Sbjct: 11  DEMATFVKVAEAGSFSEAARRLGSTPSAVSRSIARLERALGTRLILRSTRRLRLSDEGLE 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R   E+    +      +  S +P+  +RI+    LG+ L+  ++ +FL  +P + + 
Sbjct: 71  ALRHAGELVAAAKAVMSLAERRSAEPADTIRISAPRALGRFLIHPSIPDFLAAHPAVDVV 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD++ +D   D  D   R+        L+ RKL+ I     A P YL     P   +E
Sbjct: 131 LKLDDRQVDPVDDQVDIVFRITDD-PPPGLVGRKLMRIEHVVCATPAYLARHGRPAHPRE 189

Query: 186 LDKHNLITFGD 196
           L  H  IT  +
Sbjct: 190 LAAHGCITLSE 200


>gi|312961408|ref|ZP_07775911.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311284303|gb|EFQ62881.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 267

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 126/270 (46%), Gaps = 9/270 (3%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           + +S S+I + ++ LE  +G++LF+R  R + LT +G         V ++LE  ++EL  
Sbjct: 1   MGVSSSAIGKSVARLEQRLGVRLFHRSTRSINLTAEGMLFLNRCQRVLNELEAAELELSS 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
           +S +P GKLR+  ++ L    L   L  F   YPDI ++L   ++ +D+  +  D  +R 
Sbjct: 61  TSSEPRGKLRV--SLPLAGQFLFTLLSSFAKRYPDIHLELDFSDRLVDVVEEGFDAVVRT 118

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
            + +  S L+ R+L         AP Y +    P+   +L  H+ + +   +P   +   
Sbjct: 119 GE-LNDSRLVARRLGAFRFLLVGAPAYFQAQGTPVDASDLSNHDCLLY--RVPSTGKLER 175

Query: 207 WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDV 262
           W        G   + + L  N+   +    + G GIA LP++ VK   ++  L  ++   
Sbjct: 176 WPLPDKSHNGMQDLRAVLVCNNIDMLFNAAMQGRGIACLPEFAVKEALESGELQAVLTQE 235

Query: 263 ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +T +      +P     T KL+ F +FI L
Sbjct: 236 VTRTIHFSVLWPPNRFITPKLRCFVDFISL 265


>gi|94312798|ref|YP_586007.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
 gi|93356650|gb|ABF10738.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
          Length = 289

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 112/250 (44%), Gaps = 13/250 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++  F  AA+ L +  S++SR+IS LE  +G++L +R  R + LTE G  
Sbjct: 5   NDMALFVEVVKAKGFRSAADVLDMPSSTLSRRISALEKAIGLRLLHRTTRKIELTEAGRI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +         +L     +P G LR +  +D     L   + EF   YP +   
Sbjct: 65  YFERCKRIVGDARLAHEQLGTMLAEPVGVLRASFPVDFAVTYLAPLIAEFAGRYPGLSFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D+  +  D AIR  +P + S LI R+L +   + YA+P Y+K   EP +  +
Sbjct: 125 FDLTPRRVDLVSEPFDVAIRAGEP-EVSQLIARQLASFRTYLYASPGYIKRAGEPRAPAD 183

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L+ H  +     G       ED     T   P+G    S   +NS     +   L  GI 
Sbjct: 184 LNHHECLGIQRGGAWTLHRGED-----TTTIPVG----SRFTLNSVGMARRLAALDMGIV 234

Query: 243 LLPDYIVKDN 252
           L+ + IV D+
Sbjct: 235 LMAEAIVADD 244


>gi|319761434|ref|YP_004125371.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|317115995|gb|ADU98483.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
          Length = 318

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 3/188 (1%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  VAR  +F  AA++L L+QS++SRQI  LE EVG+ LF RH R + LT  G +LHR
Sbjct: 18  RAFLAVARHLNFRAAADELALTQSAVSRQIQALEDEVGVPLFLRHTRAVELTGAGVQLHR 77

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +    +L+    ++++ + + S  + IAT        L   ++EF   +PDI I++  
Sbjct: 78  AVAPALDRLDAAVRQVRQMAGRRS--VAIATWASFASMWLIPRMEEFQCAHPDIDIRIDT 135

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +  +D+     D A+R   P  S+   +R L    +   A+P  LK+        ++ +
Sbjct: 136 SDSVVDLDTADVDLALRWATPGGSAPGAER-LFGEQLAVVASPWLLKSMPPVRQPADVAR 194

Query: 189 HNLITFGD 196
             LI  GD
Sbjct: 195 FALIEAGD 202


>gi|163856083|ref|YP_001630381.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163259811|emb|CAP42112.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 306

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            DWD LR F  VAR+   + AA +L +  ++++R+I  LE E+   LF +  + G  LTE
Sbjct: 2   LDWDSLRYFLEVARTQRVSAAARRLGVEHTTVARRIRALEAELDSLLFEKSRSTGFVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   ++T +  L       SG LRI  T   G  +L     +F   YP 
Sbjct: 62  DGQRLFVYAEQMESAVQTARENLSGIGQALSGHLRIGATEGFGSYVLTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    +  KL    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCTKLCDYTLRLYGTPGYLARHAPIA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I + D +    E   +L  +   + + R+  L+  S ++     + G  +
Sbjct: 181 TRADLAGHTFIGYVDEL-LFSERLRYLEDL---LPDSRV-VLRSTSVVAQYHAALQGRSL 235

Query: 242 ALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I   +  LV ++ED   IT SF +Y C+ E L    ++    +F+
Sbjct: 236 AILPCFIAAQDARLVPVLEDDIAITRSFWMY-CH-EDLHKLKRMSVLWDFM 284


>gi|163855485|ref|YP_001629783.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163259213|emb|CAP41513.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 323

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 132/294 (44%), Gaps = 14/294 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F    ++GSFT AA  L L++S++ + ++ LE  +G++L +R  R L  T++G  +   
Sbjct: 26  AFVSAVKTGSFTAAAASLGLTRSAVGKSVARLEARLGVRLMHRTTRKLNPTDEGLVVFDR 85

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S++   L+     + +   KP G LR+   +  GQ  +   L  ++  +P IQ  +   
Sbjct: 86  WSQILEDLDEVDATMAQRRGKPGGILRLTAPLSFGQRHILPVLNAYVKTWPQIQADVWFT 145

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ ID+  +  D A+R+      + ++ R +        A+P YL +   P +  +L +H
Sbjct: 146 DRYIDLIEEGIDVAVRIGGIKDDARVLSRTIGGQQFVTCASPGYLADRGVPATPADLAQH 205

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + I F            W    D  I    G  R   + ++S  ++ +  + G G+  LP
Sbjct: 206 DTIFF----LSGQRPMPWRFLHDGAIEVCDGPGR---MNIDSSEALREAALSGFGLIHLP 258

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            YI   +    +LV ++E    P+  +   YP     + + + F + +  + RD
Sbjct: 259 TYITGKDLQRGDLVEVLEAYRPPADPIRLIYPSKRHLSPRTRTFIDLLVDQWRD 312


>gi|330967620|gb|EGH67880.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 301

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 139/301 (46%), Gaps = 33/301 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++TE G +
Sbjct: 7   DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNIGVVLLHRSTRQVSITEDGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++  LG+  +   L E    YP + I+
Sbjct: 67  VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGLGRRFVAPALSELAARYPKLDIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L +      A+P Y++    PLS+ E
Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNDI-APHLRARHLASNWRVLCASPAYVQQHGVPLSLAE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ------VNSYLSI------MQ 233
           L  H+ +   +               DRP G   ++ LQ      V   LS        Q
Sbjct: 186 LANHDCLVIKER--------------DRPFGIWHLNGLQGAETVKVTGSLSTNHGEIARQ 231

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
           +C+ G G+ L   + V+ +    R+++  + P +     ++  Y   L ++ K++    F
Sbjct: 232 WCLDGRGVLLRSLWDVRTDLAEGRLIQ--VLPEYRQDADIWAVYTSPLMSSAKVRVTVEF 289

Query: 290 I 290
           +
Sbjct: 290 L 290


>gi|300703240|ref|YP_003744842.1| hth-type transcriptional activator aaer [Ralstonia solanacearum
           CFBP2957]
 gi|299070903|emb|CBJ42205.1| putative HTH-type transcriptional activator aaeR [Ralstonia
           solanacearum CFBP2957]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 137/306 (44%), Gaps = 31/306 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE 
Sbjct: 1   MEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P +
Sbjct: 61  GSHFYDDIAPLFERLREVHADTTAASETVSGALRIAAPYEVGAQYLTEPVCQALARFPHL 120

Query: 123 QIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+ +  +  D ++  Y    + + + +  SSL+ R++V I    YAAP  L   R PL
Sbjct: 121 QIQVHISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAG-RAPL 179

Query: 182 SI-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---------NSYLSI 231
           +   +L     ++  D       D +W     RP G P     +V         N+ + +
Sbjct: 180 ATPADLSGWPCLSGPD-------DASW---GFRPAGAPAAEPFEVPIQPRLQTLNAEMRV 229

Query: 232 MQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +  V G G+A +   +     +   LVR++ D       VY     AL    KL   + 
Sbjct: 230 -RAAVRGLGVARMARSVGDVEVETGRLVRVLSDYEPTPLRVY-----ALMPARKLVPRKV 283

Query: 289 FIFLKA 294
            +FL A
Sbjct: 284 RVFLDA 289


>gi|290509650|ref|ZP_06549021.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289779044|gb|EFD87041.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 295

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 119/244 (48%), Gaps = 5/244 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GSF+  AE++ +S + +   I  LE  +G++L  R  R  +LT+ G   ++ 
Sbjct: 1   MFVRVVDRGSFSAVAEEMRISGTMVGLHIKALEEHLGVRLLNRTTRRQSLTDFGQGYYQS 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   +E ++ +      KP GKLR+   +  G + L     +FL+ + D+ + L+L 
Sbjct: 61  CRRILADIEDSESQAFALHQKPRGKLRVGCPVSFGVHALSPVTAQFLIEWTDMAVDLVLS 120

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +K +D++ +  D  I++ + +  ++L+ R +        A+P Y+K   EP++ +EL  H
Sbjct: 121 DKSMDMADEGLDVMIKIGELLHVNTLVARPIAPYRSVMCASPAYIKRAGEPITPEELCHH 180

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             + F   I        W L    +P+  P    +  N+  ++ +  + G GI + P+ +
Sbjct: 181 RCLGFAHPIAAN----EWTLQREGKPVRAPVNITMTCNNGEALRRAALNGLGIIMQPEIL 236

Query: 249 VKDN 252
           + ++
Sbjct: 237 LAED 240


>gi|237811197|ref|YP_002895648.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|237505379|gb|ACQ97697.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 349

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 16/262 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 36  FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 95

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E    +  P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 96  AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 154

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 155 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 213

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +LD+HN I         P   E+   L         P    L +    SI +  V G G+
Sbjct: 214 DLDRHNCIGLSGNAKAWPFVAEEGQRLL--------PSAGNLLLGDNESIREAAVSGLGL 265

Query: 242 ALLPDYIVK---DNPNLVRIME 260
           A L  + V    D   LV ++E
Sbjct: 266 ARLARFHVDADLDAGRLVPVLE 287


>gi|194365374|ref|YP_002027984.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348178|gb|ACF51301.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 13/250 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  +G F+ AA  L ++ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFVRVIETGGFSAAARTLDMTPSAVSKLVARLEQRLGTRLLQRSTRQLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V   LE  +     +  +P G+LR+ + +  GQ+ L   L  FL   P + + L
Sbjct: 71  YERGLRVLADLEEAE-RCASAHAEPRGRLRVNSNVPFGQHFLLPLLPAFLERNPQVGVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ ID+     D A+R   P++SSSL+ R+L    M   AAP Y +    P + +EL
Sbjct: 130 TLNDEVIDLLEQRTDVAVRA-GPLKSSSLVARRLGATRMMIVAAPAYAQRHGLPRTPEEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGIA 242
             HN +  G    + M+ +  L       G  R+     N+  S    + Q  + G G+A
Sbjct: 189 QSHNRLDIGH--ARAMQGWPLLQD-----GRERMLLPSGNARASNGNALRQLVLGGLGLA 241

Query: 243 LLPDYIVKDN 252
            L  Y V+++
Sbjct: 242 RLATYQVQED 251


>gi|222086880|ref|YP_002545414.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724328|gb|ACM27484.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 303

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 135/292 (46%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT AA  L + +++++  I  LE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRAFARVVETGNFTRAAATLSMPKATVTTLIQSLEAHLHAKLLNRTTRRVMVTTDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +++     +  S   PSG+LR+       + ++   L +F   YPDI I L 
Sbjct: 67  ERAIQILSEIDELDGSISNSQSLPSGRLRVEMAGAFAEKIIMPALCDFYQRYPDIHIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D   +  DCA+R   P    SLI R++  I +   AAP Y++    P    EL+
Sbjct: 127 VGDRLVDYLAENVDCALRAGMP-SDQSLIARRVGEISLITCAAPLYIEKFGLPERPDELE 185

Query: 188 K-HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             H  +++     G +IP   +  N    ++     PR   L VN   S +   + G GI
Sbjct: 186 STHYAVSYFRAQTGRVIPFEFQRGNESLEIN-----PRY-ILSVNDSRSYVNAAMAGLGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A  P ++++D     +L+ ++         ++  YP     + K++ F +++
Sbjct: 240 AQAPAFMIRDELARGDLIPVLPGWTRSPIPLHIVYPPNRHLSNKVRVFVDWL 291


>gi|254247303|ref|ZP_04940624.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124872079|gb|EAY63795.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 295

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 138/274 (50%), Gaps = 14/274 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R +  +E  +G +L  R  R L+LT+ G   H
Sbjct: 7   MRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAG---H 63

Query: 68  RVTSEVYHKL-ETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +++ H + E  ++E   +S+  +P G L+IA  +  G ++L   +  F + +P I  
Sbjct: 64  LYLAQIRHVIDEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  D  + L + I +++L++R L  +     AAP Y++    P   Q
Sbjct: 124 EVTIVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLRQLVCAAPQYVERHGTPAHPQ 183

Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  + F  D + + +  F+   T  R    P  S    N  L I  + + G GIA+
Sbjct: 184 DLASHACLAFHADFMGEYLS-FDHDQT--RITVRPNKSASSNNVGL-IRNWALSGMGIAV 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           LPD++VK   D+  L+ ++      +  +   YP
Sbjct: 240 LPDFLVKSDLDDGRLLALLPGYRLEALEMNVAYP 273


>gi|170733060|ref|YP_001765007.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169816302|gb|ACA90885.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 297

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 127/286 (44%), Gaps = 8/286 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VA   SFT AA +L  SQS++S  +  LET +G++L  R  R + LT  G
Sbjct: 5   DLIDLNAFVAVAEERSFTRAAARLLTSQSALSHTLRRLETRLGVRLLTRTTRSVALTPAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +     +  ++ T   +      P G LRI T      ++L   L+EF+  YPDI 
Sbjct: 65  ETFLQGLKPAFEAIDLTLGTVGSLRESPRGTLRITTPRHAAVSVLWPVLQEFVRDYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    D++ D  D  IRL + +  + +  +    + +   A P Y+     P   
Sbjct: 125 VEVNIDAAFRDLADDRFDAGIRLGELVAPNMVAVKIGPALRLAIVATPGYVARRGIPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L +H  I F   +P     + W     R   + R+   L  +    I+   V G G+A
Sbjct: 185 HQLAQHACINF--RLPGSGALYAWQFKKGRQEMKVRVEGPLTFDDPDMILAAAVDGQGVA 242

Query: 243 -LLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            L+ D+   +++D   LVR +ED  +P    +  YP    N+   +
Sbjct: 243 CLVEDHAAPMIRDG-RLVRFLEDWCSPFSGYHLYYPTRKNNSAAFR 287


>gi|116695918|ref|YP_841494.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530417|emb|CAJ96764.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 339

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 132/286 (46%), Gaps = 9/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSF+ A E+L + +S++SR +  LET++  +LF R  R   LT +G +    
Sbjct: 30  AFMAVATEGSFSKAGERLGIGRSAVSRNVLKLETQLSTRLFLRTTRTTQLTREGERFFEN 89

Query: 70  TSE-VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             + V H +E     L+     PSG LRI+ T   G+ ++   L +F   YPDI + L+L
Sbjct: 90  CHQGVAHIVEAMNDMLELRLGPPSGLLRISATAGFGRKVVAPLLSKFSAAYPDISLDLVL 149

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++  D +    D A R  + I+ SS++ ++L+ + M   A+P Y      P +++++ +
Sbjct: 150 DDRPTDFAAGNIDVAFRNGR-IEDSSIVAKQLIPMQMAVCASPAYAARHGLPSTLEDIAR 208

Query: 189 HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I       + +E +F     V + +   R   L  N    ++   + G GIA +  Y
Sbjct: 209 HECINTRIAGARILEWEFKVEGHVRKVVPAAR---LTFNDPELVLAAVLDGLGIAQMAGY 265

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              D      LV  M          Y CY        +++ F +F+
Sbjct: 266 QACDRIARGELVIAMGRYAPDDRGHYICYLSRQHLPSRIRVFVDFM 311


>gi|16263755|ref|NP_436547.1| putative gstR-like transcriptional regulator protein [Sinorhizobium
           meliloti 1021]
 gi|15139879|emb|CAC48407.1| putative gstR-like transcriptional regulator protein [Sinorhizobium
           meliloti 1021]
          Length = 301

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 8/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R+F  V  SG F  AA+ LH+S  S++R ++ LE  +G +L  R  R L LT  G 
Sbjct: 4   WQAMRIFVQVVESGGFAPAAKVLHMSPPSVTRAVAKLEDLIGTRLLVRTTRSLKLTAAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  ++   +     S   P+G L +      G+  +   + +FL  YP +Q+
Sbjct: 64  GYVADCRRILGEIAEAEANAAGSFTAPAGLLTVTAPALFGRIHVLPVILDFLDHYPAMQV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + I  ++  ++  +  D AIR+   + +S L+ R++ ++      +P Y     +P S Q
Sbjct: 124 KTIFVDRVTNLVDEGLDVAIRI-ASLPASGLVARRIGSVRQVLCGSPDYFARFGDPGSPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H +I    L       F     +  PI  PR+ C   N+  +++   V G G++  
Sbjct: 183 ELARHRIIGREGLFGHSEWLFGRDNNIRVPI-SPRLIC---NTNDAVLAAAVAGWGLSRF 238

Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y V  + +  R   ++ D       ++  + E    + +++AF +F
Sbjct: 239 QSYQVAPDVSAGRLKVVLADYEREPVPIHIVHAEGRIVSARVRAFVDF 286


>gi|297537389|ref|YP_003673158.1| LysR family transcriptional regulator [Methylotenera sp. 301]
 gi|297256736|gb|ADI28581.1| transcriptional regulator, LysR family [Methylotenera sp. 301]
          Length = 310

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 26/298 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F    + GS    A    ++ ++ S+ I  LE  +G +L  R  R L +TE G   +   
Sbjct: 10  FVKAVQGGSIAAGARLQGITPAAASQNIQRLEKSLGTRLLIRTTRQLAMTESGELYYAEV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   L   Q  + E   +P G+++I  ++  G+++L   +  F L YP+I +++IL +
Sbjct: 70  RNIIEGLAKAQYAITEFQGQPQGRIKIGCSVAFGRHVLMPLIPAFTLKYPNISVEVILTD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
            + D   +  D +IR ++ ++   LI RK+ T+ +   A+P YL     P    EL +H+
Sbjct: 130 GNADHISEDIDVSIRFKQQLE-PGLIARKIATVPVLFCASPSYLARKGFPKEPAELLEHD 188

Query: 191 LITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            + F   +P      +W    D     P  +P I C  ++S  S+    + G+GIA L  
Sbjct: 189 CLVF--RMPVDGRILSWGFLRDGLRYEPEIKPTIICNDIDSLGSL---AIAGAGIARLAA 243

Query: 247 YIVKD-------------NP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +I  +             NP N   I  D +   F  Y C+ +    T K++AF +++
Sbjct: 244 FIANEEIKKGRLVALFQANPHNPESIQSDSVPLEF--YACFQDKHAITKKVRAFVDYL 299


>gi|205356892|ref|ZP_02342928.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205325836|gb|EDZ13675.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 300

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 122/279 (43%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+  AE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 8   MKLFVRVAERESFSRVAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 68  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALELC 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L 
Sbjct: 128 SSDRQVDLLREDFDCVVRT-EPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDLA 186

Query: 188 KHNLITFGDLIP---------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H ++ +  L P         +      W+ T            L VNS  +    C+ G
Sbjct: 187 SHAMVHY-SLTPGVSSPGFAFETPHGMQWVKTG---------GMLTVNSTETWHTACLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI   P   V++      L+ I+         V   YP
Sbjct: 237 LGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYP 275


>gi|71908405|ref|YP_285992.1| regulatory protein, LysR:LysR, substrate-binding [Dechloromonas
           aromatica RCB]
 gi|71848026|gb|AAZ47522.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 295

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 19/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  VA  GSF+  A+Q  +++S ++RQI+ LE  +G+KL  R  R LTLT  G+ 
Sbjct: 5   DAMHLFVRVAELGSFSAVAQQQGVARSVVTRQIAALEAHLGVKLMARSTRRLTLTSGGTA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  + + +E  +  + E  + P G +RI+  +  G   L   L +F   YP++ + 
Sbjct: 65  YLEKCRVILNLVEAAETGVAEERLTPRGNIRISLPLSYGLKKLAPVLLDFSQRYPEVVLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +++  +  D +IR+ + ++S   + RK+ +  M   AAP YL     PL   E
Sbjct: 125 MDYSDRRVNLIEEGIDLSIRITRRLESGD-VARKIGSGRMLVVAAPDYLARHGRPLHPAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L  H  +  G       + + ++        E ++    V S L+      + +    G 
Sbjct: 184 LVHH--VCLGYTYAGSSQVWQFMV-------EGQLESFHVRSRLNANNGDVLTEAAAQGL 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GI   PD+IV        +  I+ D   P   +Y   P
Sbjct: 235 GITCQPDFIVDTFLAAGRVEEILADFPIPELGIYAMLP 272


>gi|330821997|ref|YP_004350859.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373992|gb|AEA65347.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 314

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 132/292 (45%), Gaps = 10/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + VF  V   GSFT  A  L  +  +ISR +S LE  +  +L +R  R LT+T+ G 
Sbjct: 4   FHNMSVFAKVVEMGSFTAVANHLDTTVGNISRAVSTLEEALNTRLLHRSTRRLTITDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +  ++ +   LE  + E +++ ++P G LR+     LG++L+   +  +   +P + +
Sbjct: 64  RFYERSAAILADLEHAEAEARDALLEPRGLLRVHCVPGLGRDLVTRAVLAYREAFPQVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L  +  ++  D  D +I + + +  S+ + +++ T H    A+P YL     P   +
Sbjct: 124 DLRLSQRMPNLLEDQLDISIVIARALPDSAYVSQQIGTSHCVLAASPAYLAAHPAPERPE 183

Query: 185 ELDKHNLITFG--DLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L  H  +  G  D  P   + +     TV RP G P  S   VN   ++      G+GI
Sbjct: 184 DLVDHRCVLLGTVDYAPDVWQLEGAGGETVFRPTG-PHFS---VNDMEAMGTALEAGAGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LL  Y   D      L R++    T    V+  Y        ++K F  F+
Sbjct: 240 GLLAGYAALDALRAGRLQRVLPGYHTWRRKVFVMYSSRQFVDARIKRFVEFV 291


>gi|157371299|ref|YP_001479288.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323063|gb|ABV42160.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 310

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 13/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++ F  VA  GS + AA  L L+Q ++S+QI+ LE ++  +L +R  R +TLT+ G+ 
Sbjct: 5   NAMQTFVRVAELGSLSAAARDLGLTQPAVSQQIASLEQQLRAQLLFRSTRAVTLTDAGAG 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    +   +   +  L   +++  G LRI      GQ  L      F   +P + I+
Sbjct: 65  YYRQIKPILAAVGEAEEVLHGQNLRLQGSLRIHAPTGFGQQHLTPLAIAFQQQHPQLNIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD++  D+  +  D AIR  + + S   + R+L  +     A+P YL    EP ++ E
Sbjct: 125 LLLDDRRADVIGEGIDVAIRFGE-LSSPGTVARRLGELQRILVASPAYLAAQGEPQTLAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIA 242
           L  H  I +  L      D + L T+  P G   +      + N+  S++     G GI 
Sbjct: 184 LATHPHIRYSGL-----SDADTL-TLIGPHGPEMVELRPVFRANNTFSLLAAIESGLGIG 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                ++     +  LV I+     P   ++  YP A    GK++A+  ++ 
Sbjct: 238 GAQRPLIGRQLASGALVPILPAWRYPPMALHAVYPAARFIPGKVRAWVEYLL 289


>gi|186476703|ref|YP_001858173.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184193162|gb|ACC71127.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 325

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + + Q ++   L EF+  YP+
Sbjct: 65  AGQLFYQHCQAMLSEAQAAVNVVQQLRASPRGTVRVSVPVTISQTIMSQILPEFMHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ +D+  D  D A+R+R +P ++++++ R L         AP  L     P
Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSEPPENANIVVRPLWRTQQMLVGAPSLLSQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L   +L +    T           +N +A    P G       EPR   L     + + +
Sbjct: 185 LEPADLKRFE--TLDTPTGDGRHVYNLIA----PDGTRHAHEHEPR---LVTADLMMVTE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +      +  L  +M     PS  +Y  +   L   G + A R F+
Sbjct: 236 AALAGVGIAALPEMMYGAALRSGRLSPVMPGWTLPSPQLYAVF---LSRQGMVPAVRTFV 292


>gi|27375232|ref|NP_766761.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27348368|dbj|BAC45386.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 294

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF +VA   SF  AA++L +S +  S+ +  LE  +G +L  R +R ++L+E G+   
Sbjct: 7   MRVFCLVAELKSFATAAQRLRISPAMASKHVMQLEKRLGTRLLNRTSRRVSLSESGALYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +  + +++V P G LR+   + +   +  G L ++   YP++ + + 
Sbjct: 67  EQARQMLDSLDEVEAAVSKATVVPRGTLRLTAPVWMANAIFAGVLADYQARYPEVCLDVD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +++  +  D A+R        +LI R +  +     AAP +LK    P    +L 
Sbjct: 127 LSGRLVNLVEEGFDLALRATG-TPDEALIARPITKVPFLLVAAPAFLKRAGRPTKFADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L+ +  L P      N   TV+     P    L+  +   +    + G G A LP +
Sbjct: 186 GQALLHYA-LYPGESFSLNRNGTVETIKLNP---VLRSGNETLLHMAALEGMGFAFLPKW 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V D+     LV ++ D I     ++  YP     + K++ F +FI
Sbjct: 242 LVADDIAAGRLVHMLPDDIIFEGRLFAVYPSRKYLSAKVRTFIDFI 287


>gi|148254263|ref|YP_001238848.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406436|gb|ABQ34942.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 209

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 15/184 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD  R+F  V R+GSF  AAE+L LS +++ R+I   E ++G  LF R   G  LT++G
Sbjct: 29  DWDAARIFLEVVRAGSFRSAAERLTLSINAVRRRIDDFERQIGATLFTRDVHGARLTDEG 88

Query: 64  SKLHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +    +      ++ET   EL  +    +   SG++R+A T  LG   L   L EF   +
Sbjct: 89  A----LVVSAVERMETAAFELLRAGDGLAGAASGEVRVAVTEGLGTFWLAPRLVEFQQSF 144

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI---HMHAYAAPHYLKN 176
           P++ + L    +  D+S   AD AI L +P    S +  KLV +   H+  +A+  YL  
Sbjct: 145 PNVLVDLYCAMRSADVSRHEADVAIHLSRP----SALDVKLVRLGRMHLMCFASEKYLGR 200

Query: 177 CREP 180
             +P
Sbjct: 201 GLKP 204


>gi|49085150|gb|AAT51256.1| PA1961 [synthetic construct]
          Length = 312

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 142/301 (47%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPPDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E     + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMADQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +   R 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGRR- 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIM 232
            L   E D  +L   G +      D    AT+  P G       EPR   L V+ ++   
Sbjct: 180 -LEHPE-DLEDLPFLGAI----HNDRKVHATLIGPDGSRYQLEREPR---LGVDDFVLRK 230

Query: 233 QYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  V G G+ LLP+ Y  ++  + +LVRI+     P  T+   Y   L  + ++ A R  
Sbjct: 231 KAAVAGLGVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAY---LPRSSQIPAIRAL 287

Query: 290 I 290
           I
Sbjct: 288 I 288


>gi|152986667|ref|YP_001348428.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961825|gb|ABR83850.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 306

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 124/272 (45%), Gaps = 17/272 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VAR G+FT AA QL ++QS++S+ ISGLE  + I+L  R  R ++ T  G +L    
Sbjct: 12  FVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAGERLLNAI 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              + ++E    EL     KPSG +RI     + + LL   L   LL YPDI+++  ++ 
Sbjct: 72  GNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIKVEFDINY 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              DI  D  D  +RL   I    +       + M   AAP Y     +P + ++L  HN
Sbjct: 132 AFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRNPRDLVDHN 191

Query: 191 LITF-----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            I       G L       + W     DR +       L  N+  +I+   + G GIA L
Sbjct: 192 CINMRMQSGGGL-------YAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIAWL 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           P+       +   L+R++E+   P F  Y+ Y
Sbjct: 245 PEEEFAPHIEEGRLLRVLEN-WCPLFPGYYLY 275


>gi|226944717|ref|YP_002799790.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
 gi|226719644|gb|ACO78815.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
          Length = 311

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 135/284 (47%), Gaps = 15/284 (5%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           +A +G+F  AA QL +++S IS +I  LE  +   LF+R +R + L+E G   ++   E+
Sbjct: 1   MAETGNFAKAARQLGVTRSVISHRIQQLEQFIQAPLFHRSSRHVRLSEVGETYYQDCVEM 60

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
               E     ++    KP G+LRI  T     + L   L EF+ LYP I++++++ ++ +
Sbjct: 61  LAGFERLTENMRNLRAKPQGRLRIQVTSAFAIDYLGYLLAEFMQLYPGIELEVVVQDRIV 120

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+  +  D A++   P    +L++R+L  +     A+P YL+N   P    +L +H +  
Sbjct: 121 DLIQEGFDVALQF-FPALVDTLVERQLFRVRRIFCASPGYLRNHAAPCHPGDLLRHTIGL 179

Query: 194 FGDLIPK----CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + D  P          +    ++ P G+ R S + +     +  + + G+GI  LP  + 
Sbjct: 180 Y-DGYPSRYQFVFRRGDERLEINLP-GQVRSSSVHL-----LRDFALGGAGIVCLPSLVA 232

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                   LV ++ D +  +F     YP   + + K++    F+
Sbjct: 233 GKELLAGRLVPVLGDYVVGTFAFRAVYPTTQRGSLKVRKLIEFL 276


>gi|325919477|ref|ZP_08181498.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325550022|gb|EGD20855.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 291

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 12/246 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L  F +VA +     A+     S++++SR+I+ LE ++G++L  R ARGL LTE 
Sbjct: 1   MDLNALIDFALVAANQGLGKASRASGRSKATLSRRIADLEEQLGVRLVERSARGLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T     ++       +E    P G+LR+A+ +   Q  +     EF   YP+I
Sbjct: 61  GQLLMDRTEVPLSEVAEAMAAAREGLSTPRGRLRVASPVLFSQLAMGRIGAEFCAAYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I +++ +D+  +  D AIR+  P   SSL+ R      +   AAP +      P+S
Sbjct: 121 MLEVIAEDRTVDLVEEQFDVAIRI-NPSPDSSLVGRCFAKDRLVVVAAPGFAM----PIS 175

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                   L +   ++    +   W+    R + EP I  L+ +S+L +    + G  +A
Sbjct: 176 ------GALTSVPAVVMSSFQPTTWVLDDGRLVLEP-IPRLRFSSFLMVRDAAIAGGSVA 228

Query: 243 LLPDYI 248
           LLP  I
Sbjct: 229 LLPQSI 234


>gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas
           arsenicoxydans]
 gi|133737918|emb|CAL60963.1| putative transcriptional regulator (LysR family) [Herminiimonas
           arsenicoxydans]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 136/287 (47%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++ + GS   AA++L ++  S+S++++G+E  + ++L  R  R ++LT +G    
Sbjct: 7   LAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTPEGEIYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +LE  +  +   +V   G L+I+ T   G+  +   L  F  LYP++ +QL 
Sbjct: 67  ADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPEVDVQLH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++     D  IR  + +  + L  RK+        A+P YLKN   PL+ ++L 
Sbjct: 127 LTDRPVNLVEQGFDADIRFGQ-LPDARLTARKIADNRRLVCASPAYLKNHGIPLTPRDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KHN I   +   +    +++ +   +   + R S L  N       + + G GI +  ++
Sbjct: 186 KHNCILLRE-SDEIYGSWHFSSGTKQETVKVRGS-LSANDGECATAWALDGQGIVVRSEW 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            V     +  L  ++ED   P   +Y  +P     + K +A  +F+ 
Sbjct: 244 DVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFML 290


>gi|104780739|ref|YP_607237.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95109726|emb|CAK14427.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 318

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 118/251 (47%), Gaps = 10/251 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    +  T  G+ 
Sbjct: 8   EQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDNLESAVGSRLFSRSTHAVRATPAGNA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL+ YP + +Q
Sbjct: 68  FAERARRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVQ 127

Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+   +    D  +R   P+  + L+   L  +   A A+P YL +   P  
Sbjct: 128 LRLIDSFVDLHGSHLGEVDLVLRA-GPLADTRLVATPLAYMVRIACASPAYLASRGVPAC 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSG 240
             EL +H+ + +  L P     F W  +VD  +    P    +  N+  +++   + G G
Sbjct: 187 PSELPEHDGLDWDGLAPP----FAWRFSVDGQVRLYRPARMRMAANNAETLLFGALAGLG 242

Query: 241 IALLPDYIVKD 251
           IA LP +++ D
Sbjct: 243 IAHLPTWLISD 253


>gi|328470331|gb|EGF41242.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 295

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 15/279 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVQSYIRVIEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQL--ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           I +QL   L  +  ++S+D      R  + + S S     L       YAAP YL+    
Sbjct: 121 ITLQLTTTLPGQLPELSLDL--FISRHLEQLNSLSFKATPLFEHKAQFYAAPSYLEKYGT 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +++EL KHN++ +G+   + ++        +R             +  ++      G 
Sbjct: 179 PQNVEELTKHNILIWGEKPAREIK-------TNRGKRVSLSGNFATTNPEALFHGAKRGM 231

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           GI +  + ++KD+     LV I+ DV     TVY  YP+
Sbjct: 232 GILMTNNVMIKDDLKSGALVPILPDVTADEATVYAYYPK 270


>gi|157145436|ref|YP_001452755.1| hypothetical protein CKO_01179 [Citrobacter koseri ATCC BAA-895]
 gi|157082641|gb|ABV12319.1| hypothetical protein CKO_01179 [Citrobacter koseri ATCC BAA-895]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 142/290 (48%), Gaps = 11/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  VAR   F+  AE+L +S + IS++++ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMRVARRAGFSAVAEELGVSPAFISKRVALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVDQMMDELSDVRQVPQGMLRIISSFGFGRRIVAPALSALAKQYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I +S+LI  KL T +    A+P +L+    P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDEI-ASNLIAHKLGTNYRILCASPAFLEQHGTPKQLSD 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L     +    +I +    F  W L T +R         L  N    + Q+C+ G GIAL
Sbjct: 187 LAAFPCL----VIKERDHPFGIWQLRTKEREYSIKVTGSLSSNHGEIVHQWCLDGQGIAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V DN    +LV+++ +   P+  ++      L ++ K++    F+
Sbjct: 243 RSWWDVCDNIASGHLVQVLPEYYQPA-NIWAVSASRLSSSAKIRITVEFL 291


>gi|170735037|ref|YP_001774151.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821075|gb|ACA95656.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 301

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 27/300 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  VA   SFT AAE L + +  +S  +  LE ++G+ L +R  R + LTE G  
Sbjct: 5   DALLIFARVAEMASFTRAAESLGIQKGRVSTVVRTLERDMGVALLHRTTRRVQLTEDGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   +++  +++  Q           G+LR+    +L ++++   L + +  +PD++++
Sbjct: 65  FYARATDLLAEVQELQSMFSGRGASLRGRLRVDMPTELARSVVVPALPQLMAAHPDLELE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC IRL  PI   +LI R L  + M   A+P YL     P ++ +
Sbjct: 125 LSSTDRRVDLVREGFDCVIRL-GPIADETLIARPLGRLRMTNAASPDYLARHGVPHTLAD 183

Query: 186 LDK------HNLITFGDLIPKC----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           L        H  +T G   P       + + WL         P  S +QVNS  +     
Sbjct: 184 LHSQGHKMIHYTLTLGARHPGWEYPDGDGYAWL---------PLPSAMQVNSVQTYHAAG 234

Query: 236 VLG-----SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G     +G + L  +I  ++  LV ++ D+                 + +++AF ++I
Sbjct: 235 LAGIGLIQAGYSALAHHI--ESGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFMDWI 292


>gi|84503058|ref|ZP_01001154.1| Transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84388602|gb|EAQ01474.1| Transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 125/268 (46%), Gaps = 15/268 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD LR+F  VAR  S + A  +L +  +++ R++  LE E G  LF +  +G  LT+ G 
Sbjct: 3   WDDLRIFLAVARDESLSAAGRRLRIDPATVGRRVGRLEQETGAALFVKSPQGYALTDAGQ 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L     +    +   Q  +   +   SG++RI     +   LL       L   P+++I
Sbjct: 63  RLLDHAQQAEQAVLAAQEGIAGQAGGLSGQIRIGAPDGVANFLLPQVCARILDANPELEI 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++   +  ++S   AD A+ +  P     L+Q K+    +H  A+  Y+       +++
Sbjct: 123 QIVALPRLFNLSRREADMAVTVSAPTAGRLLVQ-KITDYRLHLAASHDYMARHDPIAALR 181

Query: 185 ELDKHNLITFGDLIPKCMED--FNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L  H ++ +   IP  + D   ++L  +D  P+       L  NS L  + +   G+G+
Sbjct: 182 DLKAHRMVGY---IPDMIFDRELDYLGELDAGPV------PLASNSVLVQLHWLRQGAGV 232

Query: 242 ALLPDYIVKDNPNLVRIMED--VITPSF 267
            ++ D+ +   P L RI+ D   +T SF
Sbjct: 233 GIVHDFALPSAPELRRILTDQVALTRSF 260


>gi|331652378|ref|ZP_08353397.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
 gi|331050656|gb|EGI22714.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
          Length = 257

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 109/239 (45%), Gaps = 3/239 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQLI
Sbjct: 69  SVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLI 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245


>gi|307728674|ref|YP_003905898.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583209|gb|ADN56607.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 298

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 143/292 (48%), Gaps = 16/292 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ LR F  VAR+GS + AA  L +  S++SR+IS LE  + + LF R   G +LT +
Sbjct: 1   MDWNDLRYFLCVARTGSLSKAAGDLGVGVSTVSRRISELEASLRVTLFTRSPTGYSLTRE 60

Query: 63  GSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G ++      V + V+  +E +   L E   +PSG +R+AT+ ++  +L+   L +F   
Sbjct: 61  GERVLEGAEMVEAGVF-AVERSAYGLAE---QPSGTVRLATSENIATDLVIPALPQFREQ 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP I+++++      ++    AD A+R+ +P    +L  R+L  +    Y    YL+   
Sbjct: 117 YPLIRLEIVTSTLTAELDTQEADIALRMVRP-NRGNLKVRRLGRMTYSVYGRRDYLQA-- 173

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P +  +  K       D     +    W A     I +  I  L  +S  + +     G
Sbjct: 174 HPATDGDPLKGRSFIAWDGAHAHLPAAVWAA---ERIPDSDI-ALVTSSLPTQIAAVRAG 229

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+A++PD++V  N +LV+++  V   S  V+      + ++ ++KA  +F+
Sbjct: 230 LGLAIIPDFLVA-NDDLVQVLPPVRVFSNHVWLVVHPDISSSARVKAVSDFL 280


>gi|262378573|ref|ZP_06071730.1| LysR family transcriptional regulator [Acinetobacter radioresistens
           SH164]
 gi|262299858|gb|EEY87770.1| LysR family transcriptional regulator [Acinetobacter radioresistens
           SH164]
          Length = 309

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 133/273 (48%), Gaps = 11/273 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE 
Sbjct: 3   DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMEVILLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+    E  ++ + E   +  G LRIATT ++G   L   L  ++  +  +
Sbjct: 63  GQAFFHSCREMLAAAERGKVRINELRDELVGDLRIATTPEIGAMHLVPALSHWISAHRGL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +    +NK ID+     D A+R+   I+ S+L    L  +     A+P YL N   P+S
Sbjct: 123 SVHFEAENKYIDLIEGRIDIAVRMSSKIEDSNLTAVPLARVEQILVASPSYL-NQSAPIS 181

Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             E L  H+LI     +    + F++   V   + +  + S L  N+ L     C  G G
Sbjct: 182 RPEDLKNHDLIPIN--VMNNYQQFSFQHGVTSEVVDLEMRSRLYSNNVLVAKSLCQHGHG 239

Query: 241 IA-LLPDYIVKD--NPNLVRIMEDVITPSFTVY 270
           +A +L   + KD  N +LV ++ +   P+FT+Y
Sbjct: 240 LARILYLDVQKDLINGSLVEVLPEWKLPAFTLY 272


>gi|254471805|ref|ZP_05085206.1| transcriptional regulator, putative [Pseudovibrio sp. JE062]
 gi|211959007|gb|EEA94206.1| transcriptional regulator, putative [Pseudovibrio sp. JE062]
          Length = 346

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 127/289 (43%), Gaps = 9/289 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DW+ +  F  VAR+GS    AE LH +  +++R I  LE   G+ LF R  +G  LTE
Sbjct: 49  SSDWELMPAFLAVARAGSLRAGAELLHTNYGTVNRNIQALEASYGVALFVRSTKGFKLTE 108

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +     +    +   +  ++      +G LR + T     +++   +  F   YPD
Sbjct: 109 AGEAVLPFAEQAEQVIINARKRVEGLDKTEAGTLRFSVTPTFAYDVITPIISRFQEAYPD 168

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L L +   +I+ D  D ++R    + S  ++ RKL  + M  YA+  Y+       
Sbjct: 169 IQVALRLTSAVENINKDETDVSLRAAYDV-SGDVVARKLYPMAMGIYASKAYIDTTFAKA 227

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q      L   G   P+     NW++    P  + R S    + Y+  +Q    G GI
Sbjct: 228 GPQ---GAGLSWIG--WPENGPFSNWISQSAFPQADVRHSV--SDGYMR-LQMLREGCGI 279

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +P    K  P+L R+    +    T++      L+ T +++ F +F+
Sbjct: 280 SPMPVVFEKYFPDLYRVPGTPLEFGQTLWIVLHADLRKTVRIRRFVDFL 328


>gi|297180159|gb|ADI16381.1| transcriptional regulator [uncultured bacterium HF130_12L15]
          Length = 292

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 1/192 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ L+ F  VA +GS + AA ++ +SQ S+ R ++ LE ++GIKLF R   G  L+E 
Sbjct: 1   MDWNLLKSFVAVAETGSLSAAARKIEVSQPSVGRHVAELERQLGIKLFRRGRAGYELSED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  + E        ++   +G +RIA +  +   +L      F  + P I
Sbjct: 61  GIALLGRARAMREQAEAISRLALGATEAVAGTVRIAASEVVSAYVLPSMTAAFAKMEPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+++  N+  ++    AD AIR+ +P Q   L+ RK+  I + A AA  YL     P S
Sbjct: 121 EIEIVASNQVENLLRRDADIAIRMVEPAQ-LDLVARKITDIPLAACAATSYLDRRGRPAS 179

Query: 183 IQELDKHNLITF 194
             E+  H+L+ +
Sbjct: 180 PAEIVGHDLVGY 191


>gi|289673880|ref|ZP_06494770.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
          Length = 205

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 100/190 (52%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   GSF  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGSFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL++Q
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQHGTPLNLQ 182

Query: 185 ELDKHNLITF 194
           EL +H +I +
Sbjct: 183 ELVQHQVIEY 192


>gi|206560654|ref|YP_002231419.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198036696|emb|CAR52595.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 324

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLRRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L     P
Sbjct: 125 VKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L+  +L     +    +  + +  FN +A    P G       +PR   L     ++I +
Sbjct: 185 LAPDDLTGFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292


>gi|123442718|ref|YP_001006695.1| Lys family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122089679|emb|CAL12531.1| putative Lys-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 310

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 14/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GSF+  A QL +S S+ISR +S LE  +  +L  R  R L L+E G ++
Sbjct: 12  EMAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGEEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  + + +   +      + S +P G +R++    +G+ ++  ++ EFL  Y  I +QL
Sbjct: 72  FKRCNAMLNAANSVMEISGQYSQEPEGLIRVSVPKAVGRFVVHPHMPEFLQRYSKIDVQL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ILD++ +D   +  D  IR+  +P     ++ R+L+ I     A P YL     PL   +
Sbjct: 132 ILDDRYVDFIDENVDLVIRITDQP--PPGMVGRQLMNIEHLLCATPEYLAAQGTPLHPHD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALL 244
           L +H+ I  G+        F     V     + R +       L +++Q+  +GS    L
Sbjct: 190 LAQHSCIYLGETPGDARWKFRQGTKVITVAVKGRYAANHTGVRLDAVLQHIGIGS----L 245

Query: 245 PDYIVK---DNPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P +  +       LV+++ +   + + S  ++  YP       KL+ F ++I  + RD
Sbjct: 246 PYFTARTTLQQGQLVQVLPEWRFISSYSGGLWLLYPPTRYLPAKLRVFIDYIVGRLRD 303


>gi|170733562|ref|YP_001765509.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169816804|gb|ACA91387.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 324

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLRRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L     P
Sbjct: 125 VKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L+  +L     +    +  + +  FN +A    P G       +PR   L     ++I +
Sbjct: 185 LAPDDLTGFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292


>gi|21244433|ref|NP_644015.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21110097|gb|AAM38551.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 298

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 137/298 (45%), Gaps = 27/298 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA    F+ AA+ L  S +S++RQ++ LE  +G +L  R  R ++LT  GS 
Sbjct: 5   DAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAGSA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   L+  +  +   +++P+G LR+   +  G   L   L  F   YP +++ 
Sbjct: 65  YYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L ++ +D+  +  D AIR+ R+P  +  LI R+L  + + A A+P YL     P    
Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APMLIARQLGKVRILACASPAYLARAGTPQHPS 182

Query: 185 ELDKHNLITF-----GDLI----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           +L  H  + +     GD      P+   D                  L+ N+   +    
Sbjct: 183 DLAGHECLLYHYSPNGDDARFQGPQSDIDVRLHGG------------LRANNGHVLNAAA 230

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GI + PD++ + +     LVRI+ +       ++  Y        K+++F +++
Sbjct: 231 LAGQGIVIQPDFLAEPHIAAGRLVRILPEYAMGEIGIFAVYTSRSHLAPKVRSFIDYL 288


>gi|107028619|ref|YP_625714.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690222|ref|YP_835845.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897783|gb|ABF80741.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648311|gb|ABK08952.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 324

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLRRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L     P
Sbjct: 125 VKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L+  +L     +    +  + +  FN +A    P G       +PR   L     ++I +
Sbjct: 185 LAPDDLTGFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292


>gi|260463168|ref|ZP_05811370.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031018|gb|EEW32292.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 306

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 3/187 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF  V   G+ + A   + +S +  S +I  LE  +G++LF R  R L  TE G+ 
Sbjct: 5   DNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTEHGTV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +V   +   +  +   S +P G +R+   + LG+ L+   + +F   YPDI+++
Sbjct: 65  FYAGAKQVLEAITEAEAAVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPDIEVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L + ++DI  +  D A RL   I+ SSL  R ++       AAP YL+   EP+  QE
Sbjct: 125 LRLSDHNVDIMKEGIDVAFRL-GIIEDSSLRMRGIMECERVLVAAPKYLEARGEPVEPQE 183

Query: 186 L--DKHN 190
           L   KH+
Sbjct: 184 LIGKKHD 190


>gi|157369642|ref|YP_001477631.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321406|gb|ABV40503.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 296

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 15/294 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V   GSF  AAE++ +S + + + I  LE  +   L  R  R   LTE G   +  
Sbjct: 9   VFVRVVEKGSFVAAAEEMAISPTMVGKHIRYLEQRLNAPLLNRTTRRQGLTETGRVFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +    +  +   +     PSG LRI+  +  G  +L   L EFL  +P+++ +++L 
Sbjct: 69  CRRLLADADAAEASARALLSSPSGLLRISAPVTFGNRVLTPILTEFLQRHPEVEAEVVLS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  + A R+  P+    L+ R L    M   A+P YL     P   ++L  H
Sbjct: 129 DRKVDLIEEGYEAAFRI-GPVADDGLVARALPDYRMTLAASPDYLAQQGVPTQPEQLSAH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +   F         D N    +  P GE   P    L+++S   + +  + G GIAL   
Sbjct: 188 SCFGFSQW------DGNHFWRLQGPTGEISVPVRPRLRMDSGEGVRRAALAGFGIALHAC 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            ++ ++     LVR++ D    S  ++  Y    + + KL+AF       AR W
Sbjct: 242 MLLDEDIASGRLVRVLPDYSPLSRPMHLVYLPERRQSPKLEAF--IALTVARLW 293


>gi|150395293|ref|YP_001325760.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150026808|gb|ABR58925.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 302

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 131/289 (45%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT A+  L++ +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRAFLRVVETGNFTRASVSLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+     L  +   P G+LR+ T       ++   L EF   YPDIQI L 
Sbjct: 67  ERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHNKYPDIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID   +  DCAIR    +   SLI R++  +   A A+  +L+    P    +L+
Sbjct: 127 VSDRTIDYLAENVDCAIRAGT-LTDQSLIARRITEMQFVACASRDFLERHPVPQHPSDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           K N    G  +PK  +   +     R   E  +S    +  N   S +     G G+   
Sbjct: 186 K-NCYVVGYFLPKTGQQMPF--HFRRGNEEIEVSGRYTVAANESTSYIAAARAGLGVIQA 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V++   N  ++ ++ D       VY  YP     + +L+ F +++
Sbjct: 243 PLFMVREDLRNGTMLPVLPDWQVDPMPVYLVYPPNRHLSSRLRVFADWV 291


>gi|91224530|ref|ZP_01259792.1| probable LysR-family transcriptional regulator [Vibrio
           alginolyticus 12G01]
 gi|269968258|ref|ZP_06182284.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91190872|gb|EAS77139.1| probable LysR-family transcriptional regulator [Vibrio
           alginolyticus 12G01]
 gi|269827115|gb|EEZ81423.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 301

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 144/301 (47%), Gaps = 19/301 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++R F  V  +GS + AAE L ++ S++SR +S LE ++   L  R  R L +T
Sbjct: 1   MKATLDEMRTFMAVVDTGSISSAAELLSMTVSAVSRSVSRLEAKLETTLLNRTTRKLDVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+        +   +E  + +L+    KPSG LRI        ++L  ++ ++  LYP
Sbjct: 61  NEGTIYLDKVRHIVEAVENAEAQLKSQKYKPSGLLRINAATPFLLHVLTPHIAKYQSLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L  + ++I +     D A R+ + +Q+S++    L    +   A+P YL+    P
Sbjct: 121 EVEIDLNSNEENISLLGTKTDIAFRIGE-LQNSTMRAIFLGKSRIRIVASPEYLRQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI +L  H L+ F    P+ +++  W    D+      +S L+ ++  ++    + G+G
Sbjct: 180 TSIDQLLNHKLLGFNK--PEYLKE--WPIMDDKNKLLRIMSSLRSDNGETLRCLALHGAG 235

Query: 241 IALLPDYIVKDNPNLVRIM-------EDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FL 292
           IA L D++   +    R++        +V  P   VY+      KN    +   +FI F+
Sbjct: 236 IACLSDFMTYSDRQAGRLVGVLSEHTHNVEQPVHAVYY------KNASTSRRISSFIDFI 289

Query: 293 K 293
           K
Sbjct: 290 K 290


>gi|148253783|ref|YP_001238368.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405956|gb|ABQ34462.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 297

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 126/277 (45%), Gaps = 14/277 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +AR  SFT+AA +L +SQS++S  I  LE  +G++L  R  R +  T  G +
Sbjct: 7   DDLLAFVAIARERSFTNAAAKLGVSQSALSYTIRELEARLGVRLLTRTTRSVAPTAAGLR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L         ++E     ++E   KP+G +RI  T    + +L   L + L  YPDI+++
Sbjct: 67  LLTTAGPRLEEIEAELAAIRELRDKPAGTIRITATEYAAEAILLPKLAKLLPAYPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +++D    DI     D  +R  + ++   +  R    + +    AP Y K    P   Q+
Sbjct: 127 IVVDYGLTDIVAKGFDAGVRSGEQVEKDMVAVRIAPDMRIAVVGAPSYFKTRPVPKKPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L  HN +T    +P       W    ++   + R+     L  N+   IM+  + G G+A
Sbjct: 187 LIGHNCLTL--RLPTHGGLHAW--EFEKGGRDLRVRVEGQLTYNATSQIMKAALAGLGLA 242

Query: 243 LLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCYP 274
            +P+     +I K    L R++ED   P    +  YP
Sbjct: 243 YVPEGWAQPHIAKG--RLKRVLEDWCLPYSGYHLYYP 277


>gi|260550586|ref|ZP_05824795.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406297|gb|EEW99780.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 309

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G +
Sbjct: 11  NEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQQ 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I IQ
Sbjct: 71  VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    +
Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGIPNHPHD 189

Query: 186 LDKHNLITFGD 196
           L +H  I  G+
Sbjct: 190 LKQHECIYLGE 200


>gi|227822930|ref|YP_002826902.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227341931|gb|ACP26149.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 307

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 129/294 (43%), Gaps = 15/294 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR GSFT A E+L ++Q+++S QI  +E  VG  LF R  R +TLTE 
Sbjct: 14  FPLNALRVFEAAARLGSFTRAGEELGMTQTAVSYQIKLIEESVGEPLFLRRPRQVTLTEV 73

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E +  L      +  +       L I +T       L  N+  F + +P I
Sbjct: 74  GQRLAPKVTEAFELLLEA---VTSARTDADTALFIHSTPTFASQWLARNIGTFQIAHPHI 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L   +K ID   + AD AIR         L    L+ +      +P   +       
Sbjct: 131 SVRLATADKVIDFGKEAADIAIRYGDG-NWPGLTCHPLMRVEFTPMLSPALAETIGGVHE 189

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++L K  +I   D      E +   A V+ P   G P  S L   ++ +  +  V G G
Sbjct: 190 PRDLLKLRIIDPND---PWWEQWFRAAGVENPELAGRP-ASRLGAQAFEA--RAAVAGQG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +A+L      D+  L R+ +        S   +  YP A +N  K++AFR++I 
Sbjct: 244 VAILTPDFYSDDVALGRLYQPFDLRCNDSHDYWLVYPHARRNAPKIRAFRDWIL 297


>gi|150376269|ref|YP_001312865.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150030816|gb|ABR62932.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 301

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 130/288 (45%), Gaps = 8/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R+F  V  SG F  AA+ LH+S  S++R ++ LE  +G +L  R  R L +T  G 
Sbjct: 4   WQAMRIFVQVVESGGFAPAAKALHMSPPSVTRAVAQLEGLIGTRLLIRTTRSLKMTAAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  ++   +     S   P+G L +      G+  +   + +FL  YP +Q+
Sbjct: 64  GYLADCRRILAEIAEAEANAAGSFTAPAGLLTVTAPALFGRIHVLPVILDFLDAYPAMQV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +  ++  ++  +  D AIR+   + +S LI R++ ++      +P Y     EP S  
Sbjct: 124 KTVFVDRVTNLVDEGLDVAIRI-ASLPASGLIARRIGSVRQVLCGSPDYFARFGEPGSPH 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H +I    L       F   +++  PI  PR+ C   N+  +++   V G G++  
Sbjct: 183 ELAGHRIIGREGLFGHSEWLFGRDSSIRIPI-SPRLIC---NTNDAVLSAAVAGWGLSRF 238

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y V+ +    R+   + D       ++  + E    + +++AF +F
Sbjct: 239 QSYQVEADIRAGRLKVALADYEREPVPIHIVHAEGRMVSARVRAFVDF 286


>gi|111021521|ref|YP_704493.1| LysR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110821051|gb|ABG96335.1| transcriptional regulator, LysR family protein [Rhodococcus jostii
           RHA1]
          Length = 297

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 137/295 (46%), Gaps = 19/295 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  D +R    ++R+G    AA++L +  +++SR+I+ LE + G +LF R   G  LTE 
Sbjct: 2   FTADNMRYLLELSRTGRLADAAKRLGVDHTTVSRRITRLEKDTGTRLFDRGVSGWQLTEA 61

Query: 63  GSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L      V S V   L+ T      S    +G +RI T    G  +L   L     +
Sbjct: 62  GRRLVPHAEAVESAVLAALDETS-----SLGGLTGTVRIITPDGFGSFVLVPGLAALRSV 116

Query: 119 YPDIQIQLILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +PD+  +L+     D+    D+ D A+ L +P    S++ RKL    +  YA+  YL + 
Sbjct: 117 HPDLFTELVTSTTHDLLTGRDF-DIAVTLERP-SPRSVVVRKLADYDLRLYASRRYL-DA 173

Query: 178 REPL-SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            +P+ S+++L  H LI + D       D   L  +D  I + + + +Q N+     Q   
Sbjct: 174 HDPITSLEDLRHHTLIWYVD----AFLDVEPLRILDALIPDFQ-AQIQTNNIAGHYQAVK 228

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G GIA LP YI   + +LV ++ D      T +   P  L    ++KA    ++
Sbjct: 229 HGVGIAPLPSYIGALDEDLVPVLRDDFIAHRTYWLVVPRELTRLARVKAITEALY 283


>gi|24114360|ref|NP_708870.1| transcriptional activator TtdR [Shigella flexneri 2a str. 301]
 gi|30064408|ref|NP_838579.1| transcriptional activator TtdR [Shigella flexneri 2a str. 2457T]
 gi|110806947|ref|YP_690467.1| transcriptional activator TtdR [Shigella flexneri 5 str. 8401]
 gi|24053524|gb|AAN44577.1| putative LYSR-type transcriptional regulator [Shigella flexneri 2a
           str. 301]
 gi|30042665|gb|AAP18389.1| putative LYSR-type transcriptional regulator [Shigella flexneri 2a
           str. 2457T]
 gi|110616495|gb|ABF05162.1| putative transcriptional regulator LYSR-type [Shigella flexneri 5
           str. 8401]
 gi|281602448|gb|ADA75432.1| putative LYSR-type transcriptional regulator [Shigella flexneri
           2002017]
 gi|313648175|gb|EFS12621.1| HTH-type transcriptional activator ttdR [Shigella flexneri 2a str.
           2457T]
 gi|332752732|gb|EGJ83117.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-671]
 gi|332753115|gb|EGJ83499.1| HTH-type transcriptional activator ttdR [Shigella flexneri 4343-70]
 gi|332754693|gb|EGJ85059.1| HTH-type transcriptional activator ttdR [Shigella flexneri 2747-71]
 gi|332765308|gb|EGJ95532.1| DNA-binding transcriptional regulator LYSR-type [Shigella flexneri
           2930-71]
 gi|333000133|gb|EGK19716.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-218]
 gi|333014796|gb|EGK34141.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-304]
          Length = 333

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 9/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + V    ++  LV+++ +    S  ++  Y E L  + K  + RNF
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYRELLYRSMKFVSARNF 291


>gi|87119883|ref|ZP_01075779.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86164585|gb|EAQ65854.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 297

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 17/291 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VA + + + A  +L LS    S  I+ LE  +G+KL +R  R ++LTE+G +
Sbjct: 4   EHLKLFIRVAATNNISLAGSELGLSPPVASMHINKLEESLGVKLIHRTTRKVSLTEEGRE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V + + + +  +   S  P G +R+      G+  +   LK FL L P +++ 
Sbjct: 64  FLPHAEDVINAVNSAKASVGAGSFTPQGTIRVTVASSFGRMHVVPALKAFLALNPQLKVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D+     D AIR    +  SSL+ RKL        A+P Y+    EP + + 
Sbjct: 124 LRQSDSIVDMVEGGFDVAIR-NASLNDSSLVARKLAADRRIICASPEYIHEYGEPKTPEA 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  HN I   +LI     DF        P G  RI     ++ ++  S    C+ G GI 
Sbjct: 183 LLAHNCI---NLIGIDYWDFK------TPQGNVRIKPKGSMRSDNGESTRDTCIDGMGIT 233

Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289
           +      Y   +   LV++++D    S T ++  YP +     K++AF +F
Sbjct: 234 ISSVWCAYQALEEGKLVQVLKDYPLASDTAIWAVYPSSRLLAPKVRAFIDF 284


>gi|327193182|gb|EGE60090.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 301

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 117/250 (46%), Gaps = 14/250 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GSF    + + LS+S+  + +  LE  +G +L  R  R L+LT++G   +  
Sbjct: 11  IFMAVVDAGSFVAGGQAMGLSRSAAGKAVIRLEDRLGTRLLNRTTRRLSLTDEGRLFYEH 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V   ++  +  +   S  P G LR+      G+ ++   ++++LL +PDIQ+++   
Sbjct: 71  GLGVLASVDEAEASVAGQSGAPRGVLRLTVPDAFGRLVVLPIVEKYLLAWPDIQVEVNFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++  DI  +  D AIR+     +S   L+ R +        A+P YL +  EP  I +L 
Sbjct: 131 DRKADIVEEGFDLAIRIGAMPSASENRLVSRVIAADRARLCASPSYLADRGEPCHIDDLA 190

Query: 188 KHNLITFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+ + F     +       +D  W+    R       S L+++S  +I    V G GIA
Sbjct: 191 AHDCLVFSSRDQRQGWRFRGDDGAWVKAQGR-------SRLRLDSNEAIRDAAVAGLGIA 243

Query: 243 LLPDYIVKDN 252
           LLP ++   +
Sbjct: 244 LLPGFLAAGD 253


>gi|312173602|emb|CBX81856.1| Uncharacterized HTH-type transcriptional regulator ycaN [Erwinia
           amylovora ATCC BAA-2158]
          Length = 293

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 129/285 (45%), Gaps = 19/285 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F +VA  GSFT AA +  L +SS+S++I+ LE  +G++L  R  R L LT  G +    
Sbjct: 11  LFALVAGCGSFTAAATRAGLPKSSVSQRINQLEQTLGLRLINRTTRQLNLTFAGERYLVH 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+    E   + ++     PSG+LRI +   +   LL      F   YPD+ +++ + 
Sbjct: 71  CQEMVQASERAGLAIERLRDNPSGRLRITSPAGIAATLLARVNTAFQQKYPDVTLEVSVS 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+     D A+R  KP Q SSLI R++        A+P YL +       ++L +H
Sbjct: 131 DEMCDLVQSRFDVALRTGKP-QDSSLIGRRIGDGQRRLVASPGYLADYPPLAHPRQLSEH 189

Query: 190 NLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALL 244
             I        L+ +  E + WL           +    +   L   + C L S GI LL
Sbjct: 190 RCIAHRAWNEWLLQRNDEYYRWL-----------LPPTHMTDNLLYARECALSSGGITLL 238

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P ++  +   LV+++         ++  YP    N+  L  F +F
Sbjct: 239 PRFLCCE--KLVQVLPAWEVEGNELWLVYPSRKLNSPALSRFVDF 281


>gi|239820772|ref|YP_002947957.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805625|gb|ACS22691.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 316

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 132/291 (45%), Gaps = 21/291 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  VA++ SF  AA QL +S+S ++ ++  LE  VG  LF+R  R + L++ G  
Sbjct: 5   ENIETFVRVAQTQSFAEAARQLRVSKSVVTSRVKQLEDHVGAPLFHRSTRVVRLSDVGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R   E+  +      +++++   P+G LR+              L+ F   +PDI ++
Sbjct: 65  FLRDCVELVGRANDIMDQMRDAKDGPTGTLRVHALTGFVLGHFATLLRAFQSSFPDIHLE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI+ +  +D      DCA+++  P  S+ L+ R L  +     A P YL+    P S +E
Sbjct: 125 LIVSDAVVDPVKAGVDCALQI-FPAASTELVSRSLFPVRRVFCATPEYLRAHGRPASPRE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L KH L  +     +    F+         G  ++     + L  NS   + +Y +  +G
Sbjct: 184 LHKHTLGLYSGYPTRDRWTFHH--------GGEQVTMYMSAALLTNSVHLLREYAMEHAG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAF 286
           I  LP  +  +   ++R   +V+ P     SF++   Y    +N  KL+ F
Sbjct: 236 IVCLPTLVAGE--AILRGELEVVLPAHQLSSFSLSAVYAGTSRNAFKLRLF 284


>gi|170739803|ref|YP_001768458.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194077|gb|ACA16024.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 299

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 139/295 (47%), Gaps = 9/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + V   V   GS +  A +L L  +++SR++S LE  +  +L  R +R + LTE G 
Sbjct: 4   FDAMAVLLAVVEEGSLSAGARRLRLPLTTVSRKVSDLERHLRARLLTRTSRRVDLTEAGH 63

Query: 65  KLHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +  ++ E  +    E SV P G L     +  G+  L   + +FL+ YP+I 
Sbjct: 64  AYVAAARRILEQVREAERAATGEYSV-PRGDLSATAPVVFGRRHLVPIVTDFLVAYPEIA 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L ++ +++  D+ D A+R+  P+  S+L+  ++  +     A+P YL     P + 
Sbjct: 123 VRLLLIDRSVNLVEDHIDVALRI-GPLADSALVATRVGLVRRVVCASPEYLARRGTPAAP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+L+TF          F   AT   P+  P    L VN+  + +     G G+  
Sbjct: 182 EDLAAHDLVTFEGFPATTDWRFRRGAT---PLSIPIRPRLAVNAAEAAVDAARAGLGVTR 238

Query: 244 LPDYIVKD--NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  Y   D      +R++ +   P+   V F +PE  +   K++AF ++   + R
Sbjct: 239 VLSYQAADEIRSGALRVLLEAYEPAPLPVSFVHPERGQLPLKVRAFLDWAIPRMR 293


>gi|83718422|ref|YP_442910.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167581852|ref|ZP_02374726.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|257139126|ref|ZP_05587388.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83652247|gb|ABC36310.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 306

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G + +
Sbjct: 11  LHVFVSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
             T++ Y ++   +  L ++  +P G LRI + + L ++++  + L EF   YP + +++
Sbjct: 71  DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     P  + +L
Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGTPAKVADL 189

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            +H  I F    PK      W
Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208


>gi|254247704|ref|ZP_04941025.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124872480|gb|EAY64196.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 324

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLRRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L     P
Sbjct: 125 VKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L+  +L     +    +  + +  FN +A    P G       +PR   L     ++I +
Sbjct: 185 LAPDDLTGFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292


>gi|322834757|ref|YP_004214784.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169958|gb|ADW75657.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 129/261 (49%), Gaps = 13/261 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++ +F  V + GS   AA +LH S  +I+R I+ LE   G +L  R  R L  TE G++
Sbjct: 5   DEMAIFVAVLQYGSLAEAARKLHRSPPAITRAIASLEHRFGARLVERTTRSLAPTEAGAR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +    +  E+ +  SG LRI   +  G+  +   + EFL  +PD+QI+
Sbjct: 65  LAEKARLLLSQYQNAVEDTAETQL--SGLLRITAPVQFGRKHVAPLVMEFLAQHPDMQIE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++++D+  +  D A+R+    + S  + RK+  +     A+P YL    EP    E
Sbjct: 123 MMLNDRNLDLIDEGLDLAVRIGHQ-EDSGKVARKVAQVTRVLVASPAYLAQHGEPQHPSE 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L  H  +  G L  +  E + +    D  R    PR+    V S L  ++    G GIA 
Sbjct: 182 LASHQTV-MGTLRTQIRE-WRFGPNEDDLRVRLSPRLLSNDVESQLLAVRS---GQGIAR 236

Query: 244 LPDYIVKDN---PNLVRIMED 261
           L  Y V+D+     +VR+++D
Sbjct: 237 LLSYQVRDDVQAGRMVRLLKD 257


>gi|304396976|ref|ZP_07378856.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304355772|gb|EFM20139.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 127/286 (44%), Gaps = 37/286 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QLHLS SSIS+ ++ LE  + +KL  R  R + LTE G   +
Sbjct: 7   MSVFARVVELGSFTAAARQLHLSVSSISQIVAKLEDALQVKLLNRSTRSIGLTEAGKIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +      +L   +  P G+LRI ++  + QN+L G   + L  YP + + L+
Sbjct: 67  QGCRRMLAEATQVHEQLYAFNNTPIGELRIGSSSTMAQNVLAGMTSDMLREYPGLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   ++ SSL  R+L  + M   AA  YL     P       
Sbjct: 127 TGVPAPDLIADGLDLVIRV-GALKDSSLFSRRLGAMPMVVCAAKSYLTQHGTPEK----- 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-------IGEPRISCLQ------VNSYLSIMQY 234
                      P  +++F+WL    RP         E  ++ L        N  L+++++
Sbjct: 181 -----------PADIDNFSWLEYSVRPDNNFELIAPEGLVTRLSPQGRFVTNDSLTLIRW 229

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPE 275
              G+GIA +P   V +  N   I  D++ P +      VY  Y E
Sbjct: 230 LKSGNGIAYVPMMWVINEINAGEI--DILFPQYQSDPRPVYALYTE 273


>gi|319764837|ref|YP_004128774.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330827042|ref|YP_004390345.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317119398|gb|ADV01887.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329312414|gb|AEB86829.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 296

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L+VF  V   GSF+ A  +LHLS S+IS+ I+ +E  +G++LF R A  + LT++G 
Sbjct: 4   FGELQVFLRVVEEGSFSGAGRRLHLSPSTISKLIARMEARLGVRLFERVAGAIRLTQEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      +V   +E  +  ++ +  + SG +RI T +   + L+   L   L  +P + +
Sbjct: 64  RFRAAGEQVVQAMEEAEAGVRVADAEVSGTVRIHTALTTAKYLVAPRLPRLLDRHPRLHL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +L  +  D      D AI   +P +  +LI R L+       AAP YL     P   +
Sbjct: 124 DFVLGTERGDFIRQGLDVAIHSGRPTE-QTLIGRPLMARPWVIAAAPQYLARHGTPQRPE 182

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L +H  + F            D   L T+D P      + +  N    +  + +LG G+
Sbjct: 183 DLLRHRCLNFTIRTQWNRWTFHDEGGLKTIDIP------NYIGANQGELLRTFALLGLGV 236

Query: 242 ALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             L  + +  +       P L +  E      F  Y  YP       +++A  +F+
Sbjct: 237 VRLARFHIAGDLESGELVPLLTQYQERTEDDRF--YLLYPRGRSLAPRVRAVVDFL 290


>gi|254190856|ref|ZP_04897363.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157938531|gb|EDO94201.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 320

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 16/262 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E    +  P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQHRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 126 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +LD+HN I         P   E+   L         P    L +    SI +  V G G+
Sbjct: 185 DLDRHNCIGLSGNAKAWPFVAEEGQRLL--------PSAGNLLLGDNESIREAAVSGLGL 236

Query: 242 ALLPDYIVK---DNPNLVRIME 260
           A L  + V    D   LV ++E
Sbjct: 237 ARLARFHVDADLDAGRLVPVLE 258


>gi|146306542|ref|YP_001187007.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574743|gb|ABP84275.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 312

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 10/187 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A  GSF+ AA +L L+ ++ISR ++ LE+ +G++LF R  R LTLTE G   
Sbjct: 6   NLESFVRSAECGSFSAAARRLGLTPAAISRNVAQLESNLGVRLFQRSTRRLTLTEAG--- 62

Query: 67  HRVTSEVYHKLETTQ---IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            R    V   LE+ Q    +L  S+  P+G LR++     G++ L   + EFL  YP + 
Sbjct: 63  ERFLGNVGGGLESIQAAIADLTTSAGAPAGMLRLSAAPAFGRDYLLPLMPEFLARYPAVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREP 180
            +   DN+ +++  D  D AI     + +  ++ R+L   H+   A+P YL      R+P
Sbjct: 123 PEWHFDNRQVELITDGFDAAIGGGIEL-TPGVVARELAPAHLVMVASPAYLAGRPAPRQP 181

Query: 181 LSIQELD 187
             + E+D
Sbjct: 182 GQLAEID 188


>gi|227820652|ref|YP_002824622.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
 gi|227339651|gb|ACP23869.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
          Length = 303

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G+FT A+  L++ +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRVFLRVVETGNFTRASVSLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   ++     L  +   P G+LR+ T       ++   L EF   YPDIQI L 
Sbjct: 67  ERAARLLSDIDELDGSLSSAQSLPKGRLRVETASAFANLIIIPALPEFQAKYPDIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID   +  DCAIR    +   SLI R++  +     A+  +L+    P    +L+
Sbjct: 127 VSDRTIDYLAENVDCAIR-GGTLTDQSLIARRITEMKFITCASRDFLERHPMPQHPSDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           K N    G  +PK  +   +     R   E  I     +  N   + +     G G+   
Sbjct: 186 K-NTHAVGYFLPKSGQQMRF--QFRRGNEEIEIDSRYAVAANEATTYVAAARAGMGVIQA 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V+D+     +V ++ D       VY  YP     + +L+ F +++
Sbjct: 243 PFFMVRDDLRAGTMVPVLPDWQVDPMPVYLVYPPNRHLSSRLRVFADWV 291


>gi|170751315|ref|YP_001757575.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657837|gb|ACB26892.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 322

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 127/289 (43%), Gaps = 12/289 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF  V  +GSF  AA +L LS++++S+ +S LE  +G +LF R +R L LTE G
Sbjct: 15  DFEAWAVFAKVVETGSFGRAAAELGLSKATVSKAVSRLELRIGARLFNRTSRKLALTEAG 74

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  +      + +P G +R+A  +  G   +   L  F   YP + 
Sbjct: 75  QAAKDGAARILAEGEAAEALATAGAAEPRGLVRLAAPMTFGVMHVAPILPAFFREYPAVS 134

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  I     A P YL     P   
Sbjct: 135 VDLHLSDAVVDLVGGGFDIGLRIAA-LPDSSLRARRLCEIRRSLVATPAYLDRHGRPEHP 193

Query: 184 QELDKHNLITFGDL-IPKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +L +H  + +  L  P      D +    V  P G+     L+ N+  ++      G G
Sbjct: 194 DDLVRHTCLGYAYLPTPDRWRFVDGSGAEAVVVPAGQ-----LRANNAEALAPALRAGLG 248

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +AL PD+++ D+     L R++     P   ++   P       ++ A 
Sbjct: 249 LALQPDFMIWDDLESGRLERVLPAWSPPPIALHLVTPPGDPRPARVTAL 297


>gi|26249641|ref|NP_755681.1| transcriptional activator TtdR [Escherichia coli CFT073]
 gi|91212488|ref|YP_542474.1| transcriptional activator TtdR [Escherichia coli UTI89]
 gi|191172543|ref|ZP_03034083.1| HTH-type transcriptional activator TtdR [Escherichia coli F11]
 gi|237706178|ref|ZP_04536659.1| transcriptional activator TtdR [Escherichia sp. 3_2_53FAA]
 gi|26110069|gb|AAN82255.1|AE016767_15 Hypothetical transcriptional regulator ygiP [Escherichia coli
           CFT073]
 gi|91074062|gb|ABE08943.1| hypothetical transcriptional regulator YgiP [Escherichia coli
           UTI89]
 gi|190907211|gb|EDV66810.1| HTH-type transcriptional activator TtdR [Escherichia coli F11]
 gi|226899218|gb|EEH85477.1| transcriptional activator TtdR [Escherichia sp. 3_2_53FAA]
 gi|307555167|gb|ADN47942.1| HTH-type transcriptional activator TtdR [Escherichia coli ABU
           83972]
 gi|320195222|gb|EFW69851.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           WV_060327]
          Length = 326

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 27  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 86

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 87  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 146

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 147 LFDRQIDLVQDNIDLDIRINDAI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 205

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 206 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 262

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LVR++ +    S  ++  Y E L  + KL+    F+
Sbjct: 263 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 308


>gi|15598034|ref|NP_251528.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107102388|ref|ZP_01366306.1| hypothetical protein PaerPA_01003450 [Pseudomonas aeruginosa PACS2]
 gi|218890964|ref|YP_002439830.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235827|ref|ZP_04929150.1| hypothetical protein PACG_01768 [Pseudomonas aeruginosa C3719]
 gi|9948924|gb|AAG06226.1|AE004710_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126167758|gb|EAZ53269.1| hypothetical protein PACG_01768 [Pseudomonas aeruginosa C3719]
 gi|218771189|emb|CAW26954.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 323

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 9/245 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSFT AA+ L  S +++SRQ++GLE  +  +L  R+ R + +TE G + +
Sbjct: 7   IRTFVRVVEHGSFTQAAQALGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTESGLRYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +     ++++S    SG+LR+    +LG   L   L ++L  +PD+ + L 
Sbjct: 67  EHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPDVSVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L      +  +  D  I L + +  S+L+ R L  +     AAP YL     P + ++L 
Sbjct: 127 LAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPRTPEDLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  +      P C +   W    +R  GE  +     L+VN   +       G G+ LL
Sbjct: 187 RHRCLNVA--APSCPQ--GWAFVGER--GETLLDLDEALKVNLPEAACAAAAAGLGVCLL 240

Query: 245 PDYIV 249
           P ++ 
Sbjct: 241 PGFVA 245


>gi|288962388|ref|YP_003452683.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914654|dbj|BAI76139.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 302

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  VAR  SFT AA++L ++Q ++SR +  L+ ++G++L  R  RG+ LT  G+ 
Sbjct: 18  NAVRSFVAVARHLSFTRAADELAVTQGAVSRMMQTLQADLGVELIRRVGRGIELTPAGAA 77

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H    E    L+     ++ +  +  G LR++    L Q  L   LK F    PDIQ++
Sbjct: 78  FH---GEASAALDRIAAAVRATRAQDGGVLRVSALPTLTQRWLIPRLKRFQAENPDIQVE 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +    +D + ++ D AIR        + +   L+   M  + AP  L          +
Sbjct: 135 VGIGEHRVDFAKEHIDIAIRYGVEEWPGAEMA-TLMPETMGVFCAPSLLDQGPPLRRPAD 193

Query: 186 LDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H L+             +W   LA    P+ E  +S L    +  I++    G G+A
Sbjct: 194 LASHRLLR------HTTRPDSWRVYLAAFGLPLPESALS-LAFEHFFMIIEAASAGMGVA 246

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP ++ +++     LV+ +++ + P       +    +   +++ F+ ++  +A
Sbjct: 247 LLPVFLAREDVASGRLVQPIQETLRPRGRYLIAHAPGAERARRVRRFKEWLLSEA 301


>gi|255320593|ref|ZP_05361771.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|255302355|gb|EET81594.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
          Length = 309

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 133/273 (48%), Gaps = 11/273 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE 
Sbjct: 3   DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMEVILLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+    E  ++ + E   +  G LRIATT ++G   L   L  ++  +  +
Sbjct: 63  GQAFFHSCREMLAAAERGKVRINELRDELVGDLRIATTPEIGAMHLVPALSHWISAHRGL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +    +NK ID+     D A+R+   I+ S+L    L  +     A+P YL N   P+S
Sbjct: 123 SVHFEAENKYIDLIEGRIDIAVRMSSKIEDSNLTAVPLARVEQILVASPSYL-NQSAPIS 181

Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             E L  H+LI     +    + F++   V   + +  + S L  N+ L     C  G G
Sbjct: 182 RPEDLKNHDLIPIN--VMNNYQQFSFQHGVTSEVVDLEMRSRLYSNNVLVAKSLCQHGHG 239

Query: 241 IA-LLPDYIVKD--NPNLVRIMEDVITPSFTVY 270
           +A +L   + KD  N +LV ++ +   P+FT+Y
Sbjct: 240 LARILYLDVQKDLINGSLVEVLPEWKLPAFTLY 272


>gi|330990581|ref|ZP_08314538.1| Putative HTH-type transcriptional regulator ycaN [Gluconacetobacter
           sp. SXCC-1]
 gi|329762283|gb|EGG78770.1| Putative HTH-type transcriptional regulator ycaN [Gluconacetobacter
           sp. SXCC-1]
          Length = 302

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 133/297 (44%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSF+ D L  F  VAR+G F  AA     S S +S  +  LE  +G +L +R  R ++LT
Sbjct: 1   MSFELDDLSAFVAVARAGGFREAARVSGFSASGLSEALRRLEARLGTRLLHRSTRSISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS+L    S    ++      +   + +P+G +R+    ++ + +L G L  FL+ +P
Sbjct: 61  ETGSRLFAGLSPALAEISAALDTVHAQTDQPAGTIRLNVPANVARTVLPGILSPFLIAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSL-IQRKLVTIHMHAYAAPHYLKNCRE 179
            I++++ +++  +DI    AD  IR  + ++   + +     T  + A AAP YL     
Sbjct: 121 QIRVEVTVEDSFVDILASGADAGIRYEERLEQDMIAVPIGPRTQRVLAAAAPSYLSAKGR 180

Query: 180 PLSIQELDKHNL--ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCV 236
           P     L +H    + F    P  M +F     V R +  P    +Q  S   ++    +
Sbjct: 181 PQHPSALLEHACLRLRFSSGAP-AMWEFEKNGEVIR-LDPPGPLLVQPGSACDLLVDTAI 238

Query: 237 LGSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  L  D++     +  L  ++ED   P       Y    +    L+AF +FI
Sbjct: 239 AGLGIVCLFEDWLAPHIRSGALEVVLEDWAAPFSGPMLYYSGRRQLPPPLRAFVDFI 295


>gi|260429909|ref|ZP_05783884.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260418832|gb|EEX12087.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 299

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 131/294 (44%), Gaps = 8/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW  +  F  +AR+G  T AA++L +  +++SR++  LE  +  +LF R   G +LT Q
Sbjct: 5   FDWGAMEWFLAIARTGRLTLAAQKLGIDHTTLSRRVKTLEEALDARLFDRTVSGYSLTPQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       V         ++   + + +G +RI      G + L   L       P +
Sbjct: 65  GERFLAAAQRVETIALQAASDISGETSRIAGTVRIGAPEGFGSSFLAPALVRLGQAQPGL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   +   ++   AD A+ L +P     L   KL    +  Y +  YL+    P +
Sbjct: 125 KLELVTLPRQFSLTKREADMAVSLARP-SKGRLHAHKLTNYELGLYGSHGYLRERGRPET 183

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +L  H ++ +  DLI     + +++  + R I       L  +S  + M   + G G+
Sbjct: 184 LSDLRHHGILGYIQDLI--YARELDYIPQLSRDIA----PWLTSSSLPAQMNMTLAGGGL 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LP ++  D+  L +++ D +    + +      L++  +++    FI  + R
Sbjct: 238 CVLPRFLAHDHEGLEQVLPDEVRLVRSFWLVVHSELRDLSRIRICSEFITEEVR 291


>gi|237798901|ref|ZP_04587362.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021755|gb|EGI01812.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 306

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 9/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +G FT AAE+L+L+ S++S+ ++ LE+ +G++LF R  R LTLTE+G+  H
Sbjct: 14  IETFVAVANAGGFTAAAERLNLTNSAVSKSVARLESRLGMRLFERTTRRLTLTEEGAAYH 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   +  +LE  +  L    ++P+G+LRI      G+      +  F   +  ++ ++ 
Sbjct: 74  VVCMRMLAELEAAETALAAQRMEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRVT 133

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +DI  +  D A+R+  P +  + L  R L T  +   AAP YL     P + ++L
Sbjct: 134 FTDRFVDILEEGIDLAVRIGGPQVWPAGLAHRYLGTERVIFCAAPAYLHRHGTPETFEDL 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I FG           WL   ++   E R   + L + +  + +       GIA L
Sbjct: 194 ARHACILFGR---GDGSTSPWLFVDEQGQQETRAVEARLVIGNGEAQVAAVTSAWGIAQL 250

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +++K+      LV I+  + T    ++  +P   ++  K++A 
Sbjct: 251 ATWLIKEQLQRGELVEILPQLATQGLDLHLAWPRNRESLPKVQAL 295


>gi|254255212|ref|ZP_04948528.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124900949|gb|EAY71699.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 393

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 142/289 (49%), Gaps = 15/289 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL--- 66
            F  VA  GSFT AAE+L + + ++SR +  LE ++  +LF R  R   LT +G +    
Sbjct: 83  AFVAVASEGSFTKAAERLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGQRFFEN 142

Query: 67  -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   +++   +    +EL++    P G LRI + +  G+ ++   L++F   YPDI I 
Sbjct: 143 CHPGVAQIVEAM-NDMLELRQG--PPRGLLRIGSAVGFGRKVVAPLLEKFANAYPDIVID 199

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD++ +D+  +  D + R  + I+ SS+I R+L+ + M   AAP Y+     P S+++
Sbjct: 200 LLLDDRPLDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVAAHGLPRSVED 258

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  I F     +  E   W   VD  + +    + L  N    +++  + G+G+A L
Sbjct: 259 LGRHACINFRASNGRVSE---WEFKVDGRVQKYTPTARLTFNDADLVLRAVLDGAGLAQL 315

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y V+D      LV  + +        Y CY        +++ F +F+
Sbjct: 316 AGYQVRDPVARGELVVALANHAPDDRGHYICYLSRQHLPTRIRVFVDFM 364


>gi|262396725|ref|YP_003288578.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262340319|gb|ACY54113.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 295

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 29/305 (9%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS+++  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVKSYIRVVEEGSFNAAARKLNTTSSAISKRVQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYQRAKNQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQL--ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           I +QL   L  +  ++S+D      R  + + S S     L       YAAP YLK    
Sbjct: 121 ITLQLTTTLPGQLPELSLDL--FISRELEQLNSLSFKATALFEHKAQFYAAPSYLKKYGT 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-- 237
           P  +++L +HN++ +G+                R I   R   + ++   +      L  
Sbjct: 179 PQCVEDLTEHNVLIWGE-------------KPSREIKTNRGKRISLSGNFATTNPEALFH 225

Query: 238 ----GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G GI +  + ++KD+     LV I+ D+     TVY  YP+      + K F +  
Sbjct: 226 GAKRGMGILMTNNVMIKDDLKSGALVPILPDITADKATVYAYYPKLDYQHTRTKLFLD-- 283

Query: 291 FLKAR 295
           +LK+R
Sbjct: 284 YLKSR 288


>gi|254459584|ref|ZP_05073000.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           HTCC2083]
 gi|206676173|gb|EDZ40660.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 135/301 (44%), Gaps = 24/301 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR    + R G+ T AAE+L L+QS++SRQ+  LE ++G  L  R  R + +T+ G+  
Sbjct: 16  SLRALEALDRLGTATAAAEELSLTQSAVSRQLQILEEQLGAPLITREKRRMHMTDAGA-- 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            R  SEV   L        +  V+P +G L +A     G   L   L +F  L+PD+ + 
Sbjct: 74  -RYASEVRTALSLIARAAMQLHVQPGAGGLSLAILPSFGMRWLVPRLAQFAGLHPDVTVN 132

Query: 126 LILDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           L    + +    +  D AI          QS  L +  L+ +      AP +L   R PL
Sbjct: 133 LSTRMEAVQFQAEPFDAAIHYGNGHWDECQSMLLREETLIPV-----CAPDFLD--RLPL 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E      +   +  P+      WLA+ + P   P ++  Q + + +I Q  + G GI
Sbjct: 186 DSAEALCTLPLLHIETRPEAWR--RWLASHNAP--PPSLAGAQFDQFSTITQAAIHGLGI 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTV---YFCYPEALKNTGKLKAFRNFIFLKA--RD 296
           ALLPD+I +      R++     P+ ++   Y  +P +      L  FR++I  +A   D
Sbjct: 242 ALLPDFIAEQELRAGRLVTAFGGPTRSIGAYYLVWPNSNAQNPTLALFRDWISTQAEGED 301

Query: 297 W 297
           W
Sbjct: 302 W 302


>gi|149921750|ref|ZP_01910197.1| putative Transcriptional regulator, LysR family protein
           [Plesiocystis pacifica SIR-1]
 gi|149817401|gb|EDM76874.1| putative Transcriptional regulator, LysR family protein
           [Plesiocystis pacifica SIR-1]
          Length = 302

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 8/258 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VAR G+F  AA  L L+++++S Q+  LE E+G++L  R  R  +LT+ G      
Sbjct: 3   VFAEVARLGNFAAAARHLGLTRAAVSHQVKRLEDELGVRLLNRTTRSQSLTDAGQVFLAS 62

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +L+     +     +P+  +R+  +++LG   +   L  F  LYP ++I L + 
Sbjct: 63  CEAIATELDVVNRRMDNIRTEPAATIRLTCSVNLGLQAVVPALSAFHELYPKVEIDLTMT 122

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +DI  +  D AIR  K +  S L+ R L        A+P YL+    P  ++EL  H
Sbjct: 123 DDIVDIVAEGIDIAIRGGK-LADSELMARSLGRSRYRICASPEYLQARGRPQKVEELGGH 181

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +                   P G      L+ N+  S + + + G G+A LP+Y +
Sbjct: 182 AWVVYTLGKRTLTLSARGQTHTLTPAGP-----LRTNNAASRLYFTLRGHGLARLPEYDL 236

Query: 250 KDNPNLVRIMEDVITPSF 267
             +P L     + + P +
Sbjct: 237 --SPRLASGELEAVLPDY 252


>gi|167824166|ref|ZP_02455637.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167918938|ref|ZP_02506029.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|226197400|ref|ZP_03792977.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254260124|ref|ZP_04951178.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|225930779|gb|EEH26789.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254218813|gb|EET08197.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 306

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 4/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G + +
Sbjct: 11  LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
             T++ Y ++   +  L ++  +P G LRI + + L ++++  + L EF   YP + +++
Sbjct: 71  DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++  +DI  +  D  IRL   +QS  +  +    +     A P YL     P  + +L
Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLQSGMVGVKIAPALTCALVATPGYLAQHGVPSKLADL 189

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            +H  I F    PK      W
Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208


>gi|17546448|ref|NP_519850.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428746|emb|CAD15431.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 306

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 131/298 (43%), Gaps = 15/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT
Sbjct: 1   MSNPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G      + ++   +E  Q   ++S     G+LR+     + + ++   L  FL  +P
Sbjct: 61  QDGQAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPAGVARKVVIPALPAFLDAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L   ++ +D+  +  DC +R+   +  SSLI R L  +     A+P Y+     P
Sbjct: 121 QLEIELSSTDRRVDLVREGFDCVLRIGT-LGDSSLIARPLGQLPQMNCASPAYIARYGMP 179

Query: 181 LSIQELDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235
            S+ +LD H L+    T G   P       W   +D R    P    + V++  S    C
Sbjct: 180 RSLDDLDHHRLVHYVQTLGTKAP------GWEYRIDGRTAHRPMPGVVTVSTAESYEAAC 233

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G GI   P  ++        LV ++         V   YP       +++ F +++
Sbjct: 234 QAGLGIIQAPVSVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWV 291


>gi|254241505|ref|ZP_04934827.1| hypothetical protein PA2G_02203 [Pseudomonas aeruginosa 2192]
 gi|313107980|ref|ZP_07794149.1| putative ranscriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|126194883|gb|EAZ58946.1| hypothetical protein PA2G_02203 [Pseudomonas aeruginosa 2192]
 gi|310880651|gb|EFQ39245.1| putative ranscriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 323

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 9/245 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSFT AA+ L  S +++SRQ++GLE  +  +L  R+ R + +TE G + +
Sbjct: 7   IRTFVRVVEHGSFTQAAQALGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTESGLRYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +     ++++S    SG+LR+    +LG   L   L ++L  +PD+ + L 
Sbjct: 67  EHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPDVSVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L      +  +  D  I L + +  S+L+ R L  +     AAP YL     P + ++L 
Sbjct: 127 LAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPRTPEDLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  +      P C +   W    +R  GE  +     L+VN   +       G G+ LL
Sbjct: 187 RHRCLNVA--APSCPQ--GWAFAGER--GETLLDLDEALKVNLPEAACAAAAAGLGVCLL 240

Query: 245 PDYIV 249
           P ++ 
Sbjct: 241 PGFVA 245


>gi|218560147|ref|YP_002393060.1| transcriptional activator TtdR [Escherichia coli S88]
 gi|218691365|ref|YP_002399577.1| transcriptional activator TtdR [Escherichia coli ED1a]
 gi|227887783|ref|ZP_04005588.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|300973240|ref|ZP_07172079.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|300977458|ref|ZP_07173921.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|301048104|ref|ZP_07195142.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|306816586|ref|ZP_07450718.1| transcriptional activator TtdR [Escherichia coli NC101]
 gi|331659350|ref|ZP_08360292.1| HTH-type transcriptional activator TtdR [Escherichia coli TA206]
 gi|331684711|ref|ZP_08385303.1| HTH-type transcriptional activator TtdR [Escherichia coli H299]
 gi|118574171|sp|Q8FDH0|TTDR_ECOL6 RecName: Full=HTH-type transcriptional activator ttdR
 gi|118574172|sp|Q1R6S1|TTDR_ECOUT RecName: Full=HTH-type transcriptional activator ttdR
 gi|218366916|emb|CAR04687.1| putative DNA-binding transcriptional regulator [Escherichia coli
           S88]
 gi|218428929|emb|CAR09878.2| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|222034792|emb|CAP77534.1| HTH-type transcriptional activator ttdR [Escherichia coli LF82]
 gi|227835179|gb|EEJ45645.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|281180114|dbj|BAI56444.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|294493058|gb|ADE91814.1| transcriptional regulator, LysR family [Escherichia coli IHE3034]
 gi|300300024|gb|EFJ56409.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300308316|gb|EFJ62836.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|300410820|gb|EFJ94358.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|305850151|gb|EFM50610.1| transcriptional activator TtdR [Escherichia coli NC101]
 gi|307625325|gb|ADN69629.1| transcriptional activator TtdR [Escherichia coli UM146]
 gi|312947631|gb|ADR28458.1| transcriptional activator TtdR [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288828|gb|EFU48226.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|315295026|gb|EFU54363.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
 gi|315297754|gb|EFU57031.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
 gi|323951406|gb|EGB47281.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323957779|gb|EGB53493.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
 gi|324005366|gb|EGB74585.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
 gi|324011993|gb|EGB81212.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
 gi|330909126|gb|EGH37640.1| putative transcriptional regulator LYSR-type [Escherichia coli
           AA86]
 gi|331053932|gb|EGI25961.1| HTH-type transcriptional activator TtdR [Escherichia coli TA206]
 gi|331078326|gb|EGI49532.1| HTH-type transcriptional activator TtdR [Escherichia coli H299]
          Length = 310

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDAI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LVR++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|330937149|gb|EGH41195.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 304

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 13/273 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   AR+GSFT AA++L +++S++ + I+ LE  +G KLF+R  R L LT  G      
Sbjct: 13  IFVTAARAGSFTSAADRLGITKSAVGKSIAKLEERLGCKLFHRSTRSLGLTVDGEAYFAS 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S    ++   +  L  +   P G+LRI      G++++   L + L   P +++ +  +
Sbjct: 73  CSLAVDEVLAAEAFLTSNQKTPGGRLRIDLPAAYGRSVVLPVLLDILEANPGLKLTVTFN 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID+  +  D +IR      +S L+ R+L        AAP Y++    P S ++L +H
Sbjct: 133 DSVIDLIEEGVDLSIRFGALKDTSGLVARRLAVQKQIICAAPRYIQKHGYPESPEDLQQH 192

Query: 190 NLIT---FGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             I     G  +    +++   LA +  P         +V    +I+     G GI  +P
Sbjct: 193 RCIVNYRRGQRVSWTVLDESGELARITPP------GTHEVGDGDAIIAMAAAGPGICQMP 246

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
             +++D   +  LV ++E        ++  +P+
Sbjct: 247 GSLIRDHLKDGRLVPVLEKYHPDDVAIHAVWPQ 279


>gi|261342103|ref|ZP_05969961.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315434|gb|EFC54372.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 294

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 24/294 (8%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V  SGSFT AA +L +S   + + I+ LE+ +G +L  R+ R  +LT+ 
Sbjct: 2   DKLRGMETFIAVVESGSFTGAASRLEMSAVMVGKYIAQLESRLGTRLLERNTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     V  ++   +  ++     P+G LR+      G  ++      FL  YP +
Sbjct: 62  GRVYYDEAKRVLEQVTIAESAVERLRATPAGTLRVTAPTSFGGCVIAPLTATFLQRYPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D+  +  D AIR+   + +  ++ + L    M   AAP YL     P +
Sbjct: 122 RVELDLTNRRVDLVEEGVDLAIRI-GDMHADDVVAKYLCPYRMVICAAPDYLARYGTPQT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYC 235
             +L  H           C+    W A        V+  +   R + L+ N    +    
Sbjct: 181 PADLVDH----------LCLSHTVWTARNEWRLPGVEGEVRWKRDAVLRCNDGYGLRMAA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             G+G+ L P+ +V +   +  LVR++E        V   + + L+   KL  F
Sbjct: 231 RAGAGLLLQPEVLVAEELASGRLVRVLEHYTPTPRPVNLLWRQDLRPLPKLTEF 284


>gi|170740203|ref|YP_001768858.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194477|gb|ACA16424.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 307

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 135/289 (46%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +   +A +G+ + AA+   LS ++ SR ++ LE  +G+ L  R+ R L+LT++G K 
Sbjct: 6   QLELLVAIAEAGTISGAAQARGLSVAAASRTLAALEERLGVLLVRRNTRTLSLTDEGGKF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +  ++ E+  +++ PSG LR++ ++  G   +   L  +   YP++++ +
Sbjct: 66  LARARGILADVADSEAEVTGAALDPSGLLRVSASLSFGLLHIAPLLPAYHARYPNVRVHV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+ +D+     D AIR R+     ++  R+L         AP YL     P   ++L
Sbjct: 126 EISNRYVDLIDAGIDVAIRTREFEPDRAITIRRLAETRRILTGAPSYLARAGCPAHPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H L     LI     + N L     +  +  P    L+ N    +    + G G+ + 
Sbjct: 186 ARHAL-----LIYVYANNPNELTFTRGEETVRVPAHGLLESNDGQILRAAALNGLGLLVQ 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P YIV D+     LV +++    P   + F YP     + K+++F  F+
Sbjct: 241 PTYIVHDDVAAGRLVPVLDAWDLPRLRINFAYPTRKHLSAKVRSFIAFM 289


>gi|167620283|ref|ZP_02388914.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257139347|ref|ZP_05587609.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 301

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE  +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   YP + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGRLRIAPIVAAFRRQYPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGAPERP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+  P+      W     +P+     + L  N   +     + G+GIAL
Sbjct: 184 ADLLAHRCIVMGEQ-PR----VEWRFDGPQPVAVEVSAALLTNDGGAARALALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V  +     L R++ +  + +  ++  YP       +++ F +++ ++ R
Sbjct: 239 KSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELR 293


>gi|325525084|gb|EGD02979.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 290

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 132/285 (46%), Gaps = 10/285 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA+ L + Q+++ R+++ LE ++G  LF R ++G   T  
Sbjct: 1   MNWDDARVFLAIHRERTLRRAAQTLGVDQATVGRRLATLEHQLGATLFLRSSKGYLPTPV 60

Query: 63  GSKLHRVTSEV-YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G    R    +  H  E  ++  Q    + +G +++ TT  L    +  ++      +PD
Sbjct: 61  GELALRAAEAMEQHAHELVRLT-QGVDRRLAGDVKVTTTDALAIEFVMPSIARLHAKHPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L    + ++++   AD A+R  +P  +  L+ R+L    M  +A+P YL+   EP 
Sbjct: 120 VCVSLNTSTQVLNLAKREADIAVRTVRP-ANPDLVARRLARWDMGLFASPDYLQRHGEPT 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                  H+L+ +   I          A    PIG+ RI   ++NS L +      G GI
Sbjct: 179 RGTAFAGHDLVVYQPYIDASRRP----AIAGEPIGDARIVA-RMNSSLMMRAALRAGLGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKA 285
             +P Y+  +   LVR+    +  + + V+      L++T +++A
Sbjct: 234 GEIPVYM-GERDGLVRVWPGQLREAPYEVWLVTHRDLRHTARIRA 277


>gi|299532623|ref|ZP_07046012.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298719426|gb|EFI60394.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 313

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 140/301 (46%), Gaps = 18/301 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR+++ LE  +G++L  R  R L+LT+ G
Sbjct: 3   DLNDMLYFVEVVERGGFAAAGRALGIPKSRLSRRVAELEAHLGVRLLQRTTRKLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +          + E   +P G +R+   + L Q +L   + EFL   P +Q
Sbjct: 63  ETFLRHGQAMRDAALAASDAVAEVQTEPRGTIRVTCPVTLAQTVLGELMPEFLKRCPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +++  +  D A+R+R  ++ S S++ ++L +      A+P  L+    P S
Sbjct: 123 VEMQVTNRPVNLVEEGVDVALRVRATLEDSGSMVVKRLDSSRQILVASPDLLQRQGTPRS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
           +++L   + +         ++  + L  V  P G+     LQ    V+  L++    + G
Sbjct: 183 LEDLQLLDSMAM-----TAVDGHSSLLLVG-PEGKEHRLQLQPRYVVDDLLTLKFAALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294
           SG+  LPDY+ +D      LV+++     P   V+  +P      G   A R+F+ FL  
Sbjct: 237 SGMCWLPDYMCQDELTRGTLVQLLPQWAPPRGIVHAVFP---SRRGLAPAVRHFLDFLGE 293

Query: 295 R 295
           R
Sbjct: 294 R 294


>gi|220925824|ref|YP_002501126.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219950431|gb|ACL60823.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 296

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 14/262 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R    V   GS + AA  L L+Q +I RQI+ LE  +G+ LF R   GLT TE G 
Sbjct: 6   WDHCRAALAVLEEGSLSAAARALGLTQPTIGRQIAALEETLGVVLFTRSQAGLTPTEAGL 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +       +  +  +    +G +RI  +  +G  +L   L      +P + +
Sbjct: 66  ALRPYAEALRATASALERAVTAAGEGVAGTVRITASEVVGGEVLPPILARLHEAHPALTL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L ++  D+    AD A+R+  P+Q ++L+ RK+ ++ +  +A   YL     P +  
Sbjct: 126 ELVLSDRVQDLLRRDADIAVRMTAPLQ-AALLARKVGSVRLGLHAHRRYLDRRGTPAAAA 184

Query: 185 ELDKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +L +H+LI F      L    +E  ++    DR      +   + +S L+ +     G G
Sbjct: 185 DLPRHSLIGFDAETAFLRSMRIEGVDF----DRA-----LFAWRSDSALAQLAAIRAGFG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDV 262
           I +    +   NP+LV ++ ++
Sbjct: 236 IGVCQAALAARNPDLVPVLPEI 257


>gi|330976533|gb|EGH76583.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 304

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 13/273 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   AR+GSFT AA++L +++S++ + I+ LE  +G KLF+R  R L LT  G      
Sbjct: 13  IFVTAARAGSFTSAADRLGITKSAVGKSIAKLEERLGCKLFHRSTRSLGLTVDGEAYFAS 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S    ++   +  L  +   P G+LRI      G++++   L + L   P +++ +  +
Sbjct: 73  CSLAVDEVLAAEAFLTSNQKTPGGRLRIDLPAAYGRSVVLPVLLDILEANPGLKLTVTFN 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID+  +  D +IR      +S L+ R+L        AAP Y++    P S ++L +H
Sbjct: 133 DSVIDLIEEGVDLSIRFGALKDTSGLVARRLAVQKQIICAAPRYIQKHGYPESPEDLQQH 192

Query: 190 NLIT---FGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             I     G  +    +++   LA +  P         +V    +I+     G GI  +P
Sbjct: 193 RCIVNYRRGQRVSWTVLDESGELARITPP------GTHEVGDGDAIIAMAAAGQGICQMP 246

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
             +++D   +  LV ++E        ++  +P+
Sbjct: 247 GSLIRDHLKDGRLVPVLEKYHPDDVAIHAVWPQ 279


>gi|330863503|emb|CBX73620.1| HTH-type transcriptional activator aaeR [Yersinia enterocolitica
           W22703]
          Length = 297

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 30/251 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE+E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLESELNVKLLNRSTRRIGLTEAGRIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + + L+
Sbjct: 61  QGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P       
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEK----- 174

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQY 234
                      P  M +F+WL    RP     +  P     Q+        N   +++++
Sbjct: 175 -----------PSDMTNFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIRW 223

Query: 235 CVLGSGIALLP 245
              G+GIA  P
Sbjct: 224 LKAGAGIAYAP 234


>gi|269963744|ref|ZP_06178063.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831537|gb|EEZ85677.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 294

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 134/278 (48%), Gaps = 19/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF  VA   SFT AA+ L + ++ +S+ +S LE  +  +L +R  R L+LT+ G +
Sbjct: 5   DDMMVFAKVAEKQSFTQAADDLDIGKARVSQIVSKLEQALNTRLLHRTTRSLSLTDAGLR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +         E Q+++  PSG +RI+T      + L   L EFL LYP+I++ 
Sbjct: 65  YYEKCKLIGDIASEANAETQDANQIPSGTIRISTP----SSALVDILSEFLHLYPEIKLD 120

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE---PLS 182
           +I  +   ++     D A+R    ++ SSL   +L        A P YL    +   P  
Sbjct: 121 IIESDSYSNLIESRCDIALRASSALEDSSLYAVRLGYFRDMICATPTYLSKVEKVSTPED 180

Query: 183 IQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  LD   H+++  GD   K +   N    V R +  P++   QV +  ++ ++ +   G
Sbjct: 181 LLALDWISHHIV-HGD---KQLTMTNSQGQVTRLVHSPKV---QVRTAAAVKEFVLNHLG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            A++P +++K+     +LVRI+ DV      +Y  Y E
Sbjct: 234 FAIMPSFMMKEELARGDLVRILPDVHDLEIPIYAVYQE 271


>gi|239817713|ref|YP_002946623.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804290|gb|ACS21357.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 314

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 130/290 (44%), Gaps = 22/290 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  +  +GS + AA Q+  +Q ++SR++  LE  +G++L  R    + LTE G + +
Sbjct: 15  MQTFVHIVEAGSLSAAALQMGATQPTVSRRLQALERSLGVRLLRRSTHAMKLTEDGERCY 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+       + +L+    +P G LR+     LGQ LL G L ++L  YP + ++ +
Sbjct: 75  ERARELLADWHAFEADLRGVGDEPEGTLRVVAPHALGQLLLVGPLADYLRAYPRVSVEWL 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++  D   +  DCAI++ + +  +  +  KL  +     AAP  L     P    EL 
Sbjct: 135 LNDRRPDFIAEGVDCAIQVGE-VTDTLAVALKLSEVPRVVVAAPSVLAGRAPPAHPSELA 193

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYCVLGSG 240
           +   +             N +    RP GE       PR+S    +S  ++     +G G
Sbjct: 194 ELPWLALRTFY------RNEVLLTHRPSGEVARVPIRPRMS---TDSLYALQSAARMGLG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAF 286
             +   ++V ++    R+++ V    + P   VY  YP +     +L+ F
Sbjct: 245 ACMASAWLVNEDIAAGRLVQLVPQWHVAP-LPVYLIYPPSRFQPARLRRF 293


>gi|163757519|ref|ZP_02164608.1| transcriptional regulator [Hoeflea phototrophica DFL-43]
 gi|162285021|gb|EDQ35303.1| transcriptional regulator [Hoeflea phototrophica DFL-43]
          Length = 293

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 140/298 (46%), Gaps = 12/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ LR F  VA +GS T AA +L +SQ SI R I+ LE  + ++LF R  RG  L E+
Sbjct: 1   MDWNLLRSFLAVAETGSLTAAAVRLGMSQPSIGRHIAELERLLDMQLFRRGPRGQELNER 60

Query: 63  GSKLHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G  L      +    +  ++I L  S    +G +R+  +  +G  +L   + E     P 
Sbjct: 61  GLDLLNEVRRMGDAADALSRIALGHSQ-SLTGTVRVTASEVIGALVLPRLVAELRQQEPL 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+++  N   ++    AD AIR+ +P Q   L+ R +  I +   A+  Y     +P 
Sbjct: 120 IEIEIVASNSLGNLLKRDADIAIRMTRP-QQLDLVIRHIGDIPLVPCASSDYFARAGKPQ 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS--YLSIMQYCVLGS 239
            +++L  H LI +             +A + R   +   S  +V S  +L + +    G+
Sbjct: 179 RLEDLAAHELIGYD-------RSDGIIAGLARAGIKINRSSFKVRSDNHLVLWEALRAGA 231

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           GI+     +V  +P+L   +ED+  P    Y      L+++ +++   +++F   R++
Sbjct: 232 GISFAQAPLVAGDPDLETCLEDMELPRLETYLTMHSDLRHSPRIRYVADYLFKAMRNY 289


>gi|13474213|ref|NP_105781.1| LysR family transcriptional regulator [Mesorhizobium loti
           MAFF303099]
 gi|14024965|dbj|BAB51567.1| transcriptional regulator (LysR family) [Mesorhizobium loti
           MAFF303099]
          Length = 296

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 23/295 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-- 64
           +L V   VA+ GSF  AA +L ++ S++S  +S LE  +G++L  R  R +  TE+G+  
Sbjct: 8   QLAVLATVAQCGSFRGAARELAIAPSAVSHAVSSLEARLGVRLLARSTRSVAPTEEGAQL 67

Query: 65  --KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             +L    SE+   LET      E+  +P+G LR++        +L   L  F   YPDI
Sbjct: 68  LERLRPALSEIDLALETA----LEARDRPAGNLRLSVPRTAAHLVLTPRLGAFAKAYPDI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++++++++  D+     D  +RL + +Q   +  R    +      AP Y      P  
Sbjct: 124 VLEILIEDRFTDVVEGGFDAGVRLGESLQRDMIAVRIGPDMRGAVVGAPSYFAAMPRPHH 183

Query: 183 IQELDKHNLITF----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            ++L  H  I F    G L       + W  A     I       L ++    I Q  + 
Sbjct: 184 PRDLADHRCIRFRFSSGIL-------YRWEFAKGGEEIEIAAQGPLILDEDHLIAQAAID 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+G+A + +  V+    +  L+R++ED   P    +  YP   +    L+AF +F
Sbjct: 237 GTGLAFVFEPYVRAPLADGRLIRVLEDWCPPFEGFFVYYPSRRQMRPALRAFVDF 291


>gi|317401396|gb|EFV82030.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 307

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 139/293 (47%), Gaps = 20/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++ + G+ + AA +L L+  ++S +++ LE  +G++L  R  R +++T++G    
Sbjct: 7   LAFFSLLVKHGNLSAAARELGLTPPAVSTRLAKLEQRLGVRLLNRSTRRVSVTQEGELYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +   L+  +  +  S  +P G LR+  T   G+  +   + +F   YP++++QL 
Sbjct: 67  AEGSRILADLQALERSVSSSRAQPQGLLRLNATFGFGRAHVAPAISDFARQYPEVEVQLR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D A+R    +  + L  RK+ +      A+P YL+   EP +  EL 
Sbjct: 127 LTDRPLNLIEEGFDAAVRF-GDLPDARLTARKIASNRRLLCASPRYLETFGEPRTPGELQ 185

Query: 188 KH-------NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +H       N + +G      +E  +   TV   +  P    +  N   S +++ + G G
Sbjct: 186 RHRCIVVRENDVAYGTW---RLESGSRTETVK--VRGP----VSSNDGQSALEWALDGHG 236

Query: 241 IALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +  ++    +     L +++ D  TP   ++  YPE L    K  AF +F+
Sbjct: 237 IVMRSEWETAALLRAGRLRQVLTDWATPPADIHVLYPERLNLPAKTLAFVDFL 289


>gi|299066748|emb|CBJ37942.1| putative transcription regulator protein, HTH-type [Ralstonia
           solanacearum CMR15]
          Length = 309

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 131/298 (43%), Gaps = 15/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT
Sbjct: 4   MSNPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G      + ++   +E  Q   ++S     G+LR+     + + ++   L  FL  +P
Sbjct: 64  QDGQAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPAGVARRVVIPALPAFLDAHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L   ++ +D+  +  DC +R+   +  SSLI R L  +     A+P Y+     P
Sbjct: 124 QLEIELSSTDRRVDLVREGFDCVLRIGT-LGDSSLIARPLGQLPQMNCASPAYIARYGMP 182

Query: 181 LSIQELDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235
            S+ +LD H L+    T G   P       W   +D R    P    + V++  S    C
Sbjct: 183 RSLDDLDHHRLVHYVQTLGTKAP------GWEYRIDGRTAYRPMPGVVTVSTAESYEAAC 236

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G GI   P  ++        LV ++         V   YP       +++ F ++I
Sbjct: 237 QAGLGIIQAPVSVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWI 294


>gi|293606574|ref|ZP_06688931.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292815050|gb|EFF74174.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 302

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 130/288 (45%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GS T AA +  +S +  ++ I  LET +G++L  R  R  +LTE G   +
Sbjct: 7   MEVFVAVVEQGSLTAAATRHEMSTAMAAKHIKALETRLGLRLMNRTTRRQSLTEAGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +   +   + P G LR+ +++  G   L   + ++L +YPD+ ++L+
Sbjct: 67  ARCKTILGDIRDAEQGAEALRLTPRGHLRVTSSVTFGSFELAPAIADYLSVYPDVSVELV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   DI     D A+R+ +P   S L+ R +    M   AAP YL+    P +  +L 
Sbjct: 127 LSDVVEDIVAARYDVAVRIGEP-ADSGLVARTIGRYQMVICAAPAYLERYGTPATPDDLM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H  + F     +      W  T D     G P    +  N+  ++ Q  + G G+ L P
Sbjct: 186 QHQCLDFSYWSRRT----GWQLTGDDGSQAGYPTGRFVS-NNGQALRQAALAGFGVVLQP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + ++ ++     LV I++     +  V   Y +  +   KL  F +F+
Sbjct: 241 ELLLGEDMRAGRLVPILQSFWPVARPVTLLYQKDRQALPKLTTFVDFL 288


>gi|21229521|ref|NP_635438.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766393|ref|YP_241155.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188989443|ref|YP_001901453.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21110985|gb|AAM39362.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66571725|gb|AAY47135.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731203|emb|CAP49375.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 296

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 134/301 (44%), Gaps = 22/301 (7%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   +F  V R GSF  AA +L L+++ +S  +  LE  +G+ L YR  R  +LT  
Sbjct: 5   DELRAMAIFATVVRCGSFAAAARELALTRAVVSHHVGALEARLGVPLAYRSTRSFSLTPA 64

Query: 63  GS--KLH--RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G   ++H  R+  E    L   ++   E    P G++R+  +   G   +   L  F   
Sbjct: 65  GEAFRVHCERLLDEASDGLRGMELLRAE----PQGEVRLTCSHHFGNKRILPALLAFRRR 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP I++ + + + ++D+     D A+R   P+  S+L  R LV       A+P Y+K   
Sbjct: 121 YPAIRLHIAMGDANVDLVQQGVDLAVRA-GPLPDSTLYARPLVREATLLCASPAYVKRYG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P +   L +H  + +    P            +R I  P    +  +S +S + + + G
Sbjct: 180 MPTTAAALKEHRWVIY----PPSQRQTQIQIDGER-IDIPVQGDIVTDSAVSRLAFVLAG 234

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIA LP Y          LV+++    T    +Y  + + +  + +L   R+F+   AR
Sbjct: 235 EGIARLPGYDAAAPLAAGELVQVLPQAQTAPLEIYLVHSKKIGPSARL--LRDFLLEVAR 292

Query: 296 D 296
           +
Sbjct: 293 E 293


>gi|323499612|ref|ZP_08104581.1| transcriptional Regulator [Vibrio sinaloensis DSM 21326]
 gi|323315352|gb|EGA68394.1| transcriptional Regulator [Vibrio sinaloensis DSM 21326]
          Length = 294

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 11/243 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  VA S  F+ AA+ L  S S +SRQ+S LE  VG+ L  R  R ++LTE G 
Sbjct: 4   FEGINEFVAVAESQGFSAAAKLLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTEAGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   L+    +L    ++ +G LR++      +N +   L  F   YP++ I
Sbjct: 64  IYYRQCKDLVTGLQQANEQLSSQQIELNGILRVSAAGAFAENHVAPALMLFAQQYPNLTI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +++ ++   D  D AIR  + +  S L+ RKLV   M A A+  YL     P   +
Sbjct: 124 EMDFNSRMVNFIEDGVDFAIRYGR-LTDSGLVARKLVDRPMAAAASQEYLDQYGCPSHPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +L +H+ I           + +WL     +P+   R+    + N+  +++Q C  G GI 
Sbjct: 183 QLKQHSCII--------ANNDHWLFEEQGKPLNALRVHGRWRSNNSTAVIQACEQGLGIV 234

Query: 243 LLP 245
            LP
Sbjct: 235 YLP 237


>gi|294011967|ref|YP_003545427.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292675297|dbj|BAI96815.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 299

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 136/286 (47%), Gaps = 9/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +GSF+ AA  L + Q ++S+ ++ LE  + ++L  R  R L  TE G   +
Sbjct: 11  MEVFVRVVETGSFSAAARDLRIGQPAVSKLVAALEDRLQVRLLVRSTRQLHPTEAGQAFY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   + +  +   +       G+LR+  ++   +  +   +  FL  +P++++  +
Sbjct: 71  ERARRTLAEADEAETAARGLGKGLDGRLRVCASVTFARLHIVPRIGAFLDAHPNLRVDFV 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D++ ID+  +  D A+R  + +  SSL  RKL T   +  A+P YL     P +  +L 
Sbjct: 131 MDDRYIDLLGENIDVALRAGE-LPDSSLTTRKLATCDRYVVASPAYLTRMGTPSAPSDLL 189

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  I +   +    E++ +  AT D  +  P  + L  ++   + +  + G G+A+   
Sbjct: 190 DHTAIVYTQGL--VAEEWRFRRATADTSVRIP--TRLSFSAAEGVREAVIAGLGLAISSR 245

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           ++++    + ++V ++ D   PS  ++  YP     T K +AF N+
Sbjct: 246 WMMEPELASGSVVPVLTDWKLPSADLWALYPSGRLPTAKARAFVNW 291


>gi|257485983|ref|ZP_05640024.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330891711|gb|EGH24372.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330988647|gb|EGH86750.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010307|gb|EGH90363.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 306

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +GSFT AA++L L+ S++S+ ++ LE+ +G++LF R  R L LTE+G+  H
Sbjct: 14  IETFVAVANAGSFTAAADRLSLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGAAYH 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V + +   LE  +  L     +P+G+LRI      G+      +  F   +  ++ ++ 
Sbjct: 74  AVCTRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRIT 133

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +DI  +  D A+R+  P +  + +  R L T  +   AAP YL+    P + ++L
Sbjct: 134 FTDRFVDILEEGIDLAVRIGGPAVWPAGVAHRYLGTERVIFCAAPAYLERHGVPTTFEDL 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
             H  I FG           WL   D+   E R   + L + +  + +       GIA L
Sbjct: 194 ASHACILFGR---GDGSTSPWLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGIAQL 250

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +++++      LV I+  + T    ++  +P   ++  K++A 
Sbjct: 251 ATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQAL 295


>gi|118587722|ref|ZP_01545132.1| Transcriptional regulator [Stappia aggregata IAM 12614]
 gi|118439344|gb|EAV45975.1| Transcriptional regulator [Stappia aggregata IAM 12614]
          Length = 292

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ LR F+ V+ +GS   AAE+L +S ++  R I  LE ++G +LF +       TE 
Sbjct: 1   MDWNYLRTFHAVSEAGSLAKAAEKLAISHATAFRHIRSLEEQLGSRLFEKVKGRYRATEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+++  +   V   +E     +  + +   G++R+        + L G L +F   +PDI
Sbjct: 61  GAEILDLAQSVVVAMEDIDRRISGADLALKGRIRLTAPASFAVHFLPGYLLDFKARFPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+  N++I++S   A+ A+R+        LI RK+  I    +A+  YL     P S
Sbjct: 121 TVELLTSNEEINMSSRAAEIALRVTSS-PPEHLIGRKVADIPWAYFASQSYLDRKSIPAS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H+LI    L+ +          +DR + + RI  ++ +   ++      G G+ 
Sbjct: 180 AGDLSSHDLIGASGLLAQR----PGFIQMDRSLRD-RI-VVRSDDLTTMAALARKGLGLC 233

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP  + +D    + I  +V  P+  ++      L++  ++     F+
Sbjct: 234 LLPMDVAQDGLKKLAIATEV--PANELWVLTHPDLRSVERVACMARFL 279


>gi|221067424|ref|ZP_03543529.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220712447|gb|EED67815.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 314

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 141/301 (46%), Gaps = 18/301 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR+++ LE  +G++L  R  R L+LT+ G
Sbjct: 3   DLNDMLYFVEVVERGGFAAAGRALGIPKSRLSRRVAELEAHLGVRLLQRTTRKLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +          + E   +P G +R+   + L Q +L   + EFL   P +Q
Sbjct: 63  ETFLRHGQAMRDAALAASDAVAEVQTEPRGTIRVTCPVTLAQTVLGELMPEFLKRCPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +++  +  D A+R+R  ++ S S++ ++L +      A+P  L+    P +
Sbjct: 123 VEMQVTNRPVNLVEEGVDVALRVRATLEDSGSMVVKRLDSSRQILVASPDLLQRQGTPRT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
           +++L   + +         ++  + L  V  P G+     LQ    V+  L++    + G
Sbjct: 183 LEDLQLLDSMAM-----TAVDGHSSLLLVG-PEGKEHRLQLQPRYVVDDLLTLKFAALAG 236

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294
           SG+  LPDY+ +D  N   LV+++     P   V+  +P      G   A R+F+ FL  
Sbjct: 237 SGMCWLPDYMCQDALNQGTLVQLLPQWAPPRGIVHAVFP---SRRGLAPAVRHFLDFLGE 293

Query: 295 R 295
           R
Sbjct: 294 R 294


>gi|53725283|ref|YP_102793.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67641372|ref|ZP_00440152.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121598414|ref|YP_992871.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124386275|ref|YP_001026210.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126453195|ref|YP_001066001.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167003149|ref|ZP_02268939.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167738858|ref|ZP_02411632.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167845986|ref|ZP_02471494.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167894564|ref|ZP_02481966.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167911204|ref|ZP_02498295.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167919227|ref|ZP_02506318.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|242317088|ref|ZP_04816104.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254177818|ref|ZP_04884473.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254188577|ref|ZP_04895088.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199741|ref|ZP_04906107.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254206065|ref|ZP_04912417.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254261080|ref|ZP_04952134.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254297843|ref|ZP_04965296.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254358436|ref|ZP_04974709.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52428706|gb|AAU49299.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|121227224|gb|ABM49742.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124294295|gb|ABN03564.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126226837|gb|ABN90377.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|147749337|gb|EDK56411.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147753508|gb|EDK60573.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148027563|gb|EDK85584.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157806982|gb|EDO84152.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157936256|gb|EDO91926.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698857|gb|EDP88827.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|238522295|gb|EEP85740.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242140327|gb|EES26729.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243061245|gb|EES43431.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254219769|gb|EET09153.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 301

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 136/302 (45%), Gaps = 14/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGE-----QPRVEWRFDGPHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
              + V   P+L      R++ +  + +  ++  YP       +++ F +++ ++  R W
Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 296

Query: 298 KF 299
           ++
Sbjct: 297 RW 298


>gi|254505501|ref|ZP_05117648.1| transcriptional regulator [Vibrio parahaemolyticus 16]
 gi|219551618|gb|EED28596.1| transcriptional regulator [Vibrio parahaemolyticus 16]
          Length = 307

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 136/286 (47%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L++S+S +SRQIS LE ++G+ L  R  R L LT+ G   +
Sbjct: 10  IRSFVLIAQLGNFTKAAEALNVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTDAGRLFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +     ++       E +    G +++ A    LG+ L+   + EF++ +P++ + L
Sbjct: 70  QQCAHALGTIDQALSAATEDTETLQGMIKVNAVGGYLGEELVADLISEFMISHPNVTVSL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+ + ++ +  + RKL+T+ M   A+P YL +   P    +L
Sbjct: 130 EFSSHRVDLIEDEFDIAFRMGQ-LEDAGFVARKLMTVEMGTLASPSYLASSPPPEHPNQL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +T G +     E  +    +D  I       L+  +   +++  +   GI  +P 
Sbjct: 189 RHHQCLT-GSVTRWSFEHPSTKQVMDVNIN----GHLKCKNGRVLVKGALKDHGIIRVPL 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              ++      L  + +D   PS      YP+      +LK F +F
Sbjct: 244 IYCQEELKQGALKEVFQDWRVPSVEFSMIYPKDRYQPKRLKLFISF 289


>gi|320182033|gb|EFW56938.1| Putative LysR-like transcriptional regulator [Shigella boydii ATCC
           9905]
          Length = 302

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 132/295 (44%), Gaps = 12/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAAQVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVASGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F    P   + F+W    +  I       + ++   + ++  ++G+G
Sbjct: 181 RHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED  T  P F +Y  YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDYV 288


>gi|254295211|ref|YP_003061234.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254043742|gb|ACT60537.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 294

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 125/262 (47%), Gaps = 18/262 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +  F  VA+ G+F  AAE L  S S +SR + GLE  +   LF+R  R +TLT+ G 
Sbjct: 4   WLGIEEFVAVAKRGNFKLAAEYLGQSTSHVSRAVMGLEDRIHAPLFFRSTRQVTLTDTGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L     ++    +   + +   S +P G+LR+  ++ +G+  +   L  +   +P++ +
Sbjct: 64  ALFEQCRQLVDDRDEA-LAMVTGSGEPQGELRVTCSMSMGERFIAPILLRYAEQFPNVSV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ ID++ +  D AIR    +  S L+  ++ +  +   AAP YL+      SI 
Sbjct: 123 SIHLTNRIIDLTSEGFDLAIRT-GYLDDSKLVVTRIASRRLILCAAPEYLEKHGRIDSIA 181

Query: 185 ELDKHNLITFGDLIPKCMED---FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L+ HN +       +   D    +WL     P G  R      NS +++    + G G+
Sbjct: 182 DLENHNCLAGTSTHWRFKVDGSEVSWL-----PKGRWR-----CNSGVAVRDAALSGMGL 231

Query: 242 ALLPDYIVKD---NPNLVRIME 260
             LP++ V D   +  LV ++E
Sbjct: 232 CQLPEFYVADYLKSGKLVHVLE 253


>gi|315497152|ref|YP_004085956.1| transcriptional regulator, lysr family [Asticcacaulis excentricus
           CB 48]
 gi|315415164|gb|ADU11805.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 297

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 133/288 (46%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F  VA   SF+ A+E L L ++++S  +  LE  +G +L YR  R + LT  G  
Sbjct: 5   DALRIFTRVAELSSFSQASETLGLPKATVSTAVQTLEAHLGTQLLYRTTRRVQLTHDGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++    +      Q  SV  SG++R+   I + Q+L+  NL   L  +PD++++
Sbjct: 65  FYERAKDLLADADDLSGLFQTRSV--SGRIRVDMPIPVAQSLVIPNLPLLLERHPDLRVE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +DI  +  DC IR+   +  + L  R L  + M  +A+P YL     P ++++
Sbjct: 123 LSSTDRIVDIVREGFDCVIRV-GTLSDTGLTVRALGKLSMGNFASPEYLARWGTPRTLED 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H LI +   +    + F++               + VN+  +     + G GI   P
Sbjct: 182 LKGHRLIHYVTQMGARPDGFDYSDGTQWQTMAME-GVVTVNNSEAYRHAALAGLGIVQAP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + ++     L+ I+   +  +  V   YP+      +++ F +++
Sbjct: 241 RVGMTEHVAQGRLIEILPAYVADALPVSLIYPQRRHLARRVRVFIDWV 288


>gi|294013153|ref|YP_003546613.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292676483|dbj|BAI98001.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 286

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 125/273 (45%), Gaps = 15/273 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  +R+F  + RSG+F  AA  L +S  ++ R++  LE  +G  LF R A GL LT++
Sbjct: 1   MEWSDVRIFLAIVRSGTFGGAARSLQISHPTVGRRLRALEQAIGHTLFQRTADGLVLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           G  +  +  ++       +  L  QE ++K  G LRI++    G  +L   L +F   YP
Sbjct: 61  GHGIIPLAEQMEEGALAMERRLAGQEQTLK--GSLRISSADWFGAYVLPPILADFSKAYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++++   +  +++   AD A R+  P  ++ ++QR+L  +    Y A    +   +P
Sbjct: 119 NVDVEILTGTRLFNLAQREADVAFRI-VPFDTADVVQRRLFRLEYGVYIA----EEAADP 173

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +     LIT  D       D  WL     P   P    L+ N+     + C  G G
Sbjct: 174 -EYGDGTGFRLITH-DTSTGHFPDIAWLIE-SFPNARP---VLRSNNRNVQGRMCREGVG 227

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           IA+LP  +    P + R+      P+  ++  Y
Sbjct: 228 IAVLPRVVGNQIPGIRRVDLPTTPPARDIWMGY 260


>gi|293390883|ref|ZP_06635217.1| LysR protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951417|gb|EFE01536.1| LysR protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 297

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 126/289 (43%), Gaps = 11/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++LR F   A+ GSFT AA +L +S S++S  I  LE ++ IKLF R  R +  TE G +
Sbjct: 6   NELRTFITAAQEGSFTKAAAKLDVSTSALSHSIRKLEEQLNIKLFNRTTRSIATTEAGEQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +    ++  +E     L        GKLRI     +   +L   L  F   YP+++++
Sbjct: 66  LFQNLLPLFESIEDNLNALSTFRNTLKGKLRINGNDHVFLFILWDKLMAFAEQYPEMELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D K +DI     D  IRL   +    +  R    + M     P Y      P  +++
Sbjct: 126 LTSDTKFVDIVAGRFDAGIRLGSDVAQDMIAVRLSDKMQMAVVGTPEYFAKKATPKKVED 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240
           L +H  +     +P       W    A    P+ +  P+      NS+L I +  + G G
Sbjct: 186 LGEHECLLVR--LPTSDSIMTWEFQPAKKSAPVVKFHPKGQLCFNNSHL-ISRAVLAGKG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +A LP   ++   D+  LV ++ +V       +  YP   +N+   KA 
Sbjct: 243 LAWLPIDTMQPYLDSGELVEVLSNVAISYDGYHLYYPNRRQNSPLFKAL 291


>gi|152997501|ref|YP_001342336.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150838425|gb|ABR72401.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 298

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 143/298 (47%), Gaps = 12/298 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SF  A++ L +S+  ++R I+ +E E+G KL  R+ R +++T  G K +
Sbjct: 7   MKVFCRVYEAESFKLASDSLGISRPMVTRYINSIEEELGTKLLQRNTRNISITHAGRKYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   +E  + E+ + + KP G L+I+  +D G + +   L  F  LYP I++ + 
Sbjct: 67  QHCIAILDAIEEAENEIGDLTQKPKGLLKISVPMDFGLSHIVPLLDNFSRLYPQIELDVD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +K +D++    D AIR    +     + R L        A+P Y+    E   I++L 
Sbjct: 127 FSDKRVDMTESGVDIAIR-GGDLGGDQFVARPLCYSKGFVCASPDYILKYGELDHIEDLK 185

Query: 188 KHNLITFGD-LIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H+ + + + L+PK   + D N ++      G         N+  ++ ++ + G GI   
Sbjct: 186 NHSCLLYSNALVPKRWSLTDENGVSQTVSVSG-----AFTANNGGALTRFALAGLGIIYQ 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           PD+++    ++  LV ++ +      + Y  YP+    + K +   +F+  +  + KF
Sbjct: 241 PDFLIAKYIESGELVNLLPNYKGYEISFYAIYPQRKLMSRKTRLLLDFLQEELANTKF 298


>gi|83718504|ref|YP_443118.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83652329|gb|ABC36392.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 555

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE  +G++L  R  R  TLT++G
Sbjct: 259 DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTDEG 318

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   YP + 
Sbjct: 319 ALFHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGRLRIAPIVAAFRRQYPQVT 378

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 379 VQMQLTDAVVDLIAHDVDVAVRI-GMLADSSLIARELAPNYRVLCASPAYLAEHGAPERP 437

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+  P+      W     +P+     + L  N   +     + G+GIAL
Sbjct: 438 ADLLAHRCIVMGEQ-PR----VEWRFDGPQPVAVEVSAALLTNDGGAARALALEGAGIAL 492

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V  +     L R++ +  + +  ++  YP       +++ F +++ ++ R
Sbjct: 493 KSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELR 547


>gi|16330422|ref|NP_441150.1| transcriptional regulator [Synechocystis sp. PCC 6803]
 gi|1652912|dbj|BAA17830.1| transcriptional regulator [Synechocystis sp. PCC 6803]
          Length = 302

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 128/275 (46%), Gaps = 8/275 (2%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SF+ AA +   +Q +IS+QI+ LE  +G++L  R    L LTE+G + ++   ++   + 
Sbjct: 18  SFSAAAREQQTTQPTISKQIAALEKYLGVRLITRSTTKLNLTEEGKQYYQYCQQILETVA 77

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
             +  L E   K  G LR+  ++  G+  +   L  F+  YP ++I L++ +  +D+  +
Sbjct: 78  EAEASL-EGKEKAVGTLRLGCSVLFGEMQIVPRLSLFIARYPQVKIDLMMADYFVDMVQE 136

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D AIR+    Q  +LI  ++        A+  Y +   EP + +EL +HN I +  L 
Sbjct: 137 GLDLAIRIGNH-QDKALISERIGITRRVTVASTSYFEKSGEPKTPEELTRHNCIVYTSLS 195

Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNL 255
                 F+    V   I        Q NS +++    +   GIA+ P ++  D+    NL
Sbjct: 196 TINEWHFHGKNGV---IAINVKGSFQTNSSVAVRAAVLSDLGIAIAPIWMFGDDIYQGNL 252

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +++D     F +Y  Y  +     K+  F +F+
Sbjct: 253 KVVLQDYQPVPFPIYAVYRRSRFYPAKVHCFIDFL 287


>gi|330875082|gb|EGH09231.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 305

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AA+ LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAADSLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP +++
Sbjct: 64  AYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFTRRYPQVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL ++
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQVTCASREYLQQHGTPLQLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H +I +            ++     P  +  ++C + VNS    +  C  G G+  
Sbjct: 183 DLAHHQVIEYFSASTSKRYGLEFVGEGGAP--DHGLACSISVNSADGYVAACEAGFGLIQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y +     +  LV ++     P   +   YP   + + +++ F +++
Sbjct: 241 VPRYHIAGQLRSGTLVEVLRRHRPPPLALTALYPPHRQLSRRVRVFVDWL 290


>gi|116252105|ref|YP_767943.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256753|emb|CAK07843.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 301

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 17/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF     +G F  AAE+L L++S++ + I+ LE  +G++LF+R  R  +LTE G +
Sbjct: 6   DGVQVFVEAVETGGFAKAAERLSLTRSAVGKAIARLEERLGVRLFHRTTRTQSLTEDGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +L   +  L+    +  GKLR++  +  G+      L+ +   +  ++++
Sbjct: 66  YYERCVRAIEELRAGESLLESGRREVVGKLRVSLPVLFGRYCAAPILRAYARQHERLELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  D  D A+R       ++L  R+LV+      A+P YL    EP S+ +
Sbjct: 126 LSFSDRQIDLIADGFDLAVRNGVLGNGTALHARRLVSPRKALCASPAYLAARGEPHSLAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L +H+ + +         D+    T   P     +  L V S L       I    V G 
Sbjct: 186 LPEHDTLVY------WRNDYG--LTWQLPDATGALIDLSVTSRLRFDDLEVIADAAVDGM 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           G+A LP +++ D      LV +  D    +   Y  +P
Sbjct: 238 GLAWLPYWLIHDRVQAGELVELWTDRPRAAMECYAVWP 275


>gi|78063778|ref|YP_373686.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971663|gb|ABB13042.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 352

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 131/289 (45%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A +G+FT   ++L+L+ + +SR I+ LET +GI+L  R  R + LTE G +  
Sbjct: 7   MQVFVTLADAGTFTETGKRLNLTTAYVSRTIASLETHLGIRLLNRTTRSMCLTEAGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++ ++ E + + + P G+LR   +  +    +   +  F   YPD+ + L 
Sbjct: 67  ARARDITLAVDASEREARGARLHPHGRLRAHCSASIANRFVIPLVAHFQARYPDVSVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D+  D  D A+     + SS  +   +  I     A+P Y      P + + L 
Sbjct: 127 LAPQVPDLVRDSYDAAVIAMPSLPSSDQVAIDVGRIGSVLCASPAYAARHGMPDTPRALA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
           +H  +    L+        W  T+ R      ++    +  +   S+      G+GI LL
Sbjct: 187 RHRCL---QLVAPAYPAREW--TLTRGADSETVAFEPAMTADVAASLEIAVREGAGIGLL 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+++  D   +  LVR++ D       V+  YP       K +A+ +F+
Sbjct: 242 PEFVADDGLRSGALVRVLPDYRAEDVGVFLVYPSRKLLDAKTRAWVDFM 290


>gi|332533076|ref|ZP_08408946.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037555|gb|EGI74008.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 315

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V + GSF  AA    +  SS+S+QI  LET +G++L  R  R  +LT  G +
Sbjct: 5   NQLTLFVDVVQKGSFAKAAALHDMDNSSLSKQIKKLETSLGVQLLNRSTRSFSLTSAGEE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +   L            KP G LRI + +  GQ  +Q  +  F+  YP+++I 
Sbjct: 65  ILTQAHILIDTLSDIHSIADSYQAKPKGILRITSGMFFGQQYIQPAINIFMQKYPEVKIT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD+K  DI  D+ D A R+ K +  S+L+ RK+  +H    A+  ++K    P + ++
Sbjct: 125 LMLDDKRNDIIADHYDLAFRIGK-LNDSNLMARKIANMHFALVASHDFIKKHGMPSTPED 183

Query: 186 LDKHNLITFGD 196
           L     I +G+
Sbjct: 184 LLALPAIIYGN 194


>gi|296115479|ref|ZP_06834112.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977962|gb|EFG84707.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 316

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 132/287 (45%), Gaps = 11/287 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S DWD  R F  V  +GS + AA  L L+Q ++  +I  LE  +G  LF R   GL  T
Sbjct: 4   LSPDWDGQRAFLAVLDTGSLSAAARSLGLTQPTVRHRIEALERAIGQPLFSRTVNGLVPT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +   +L      +    E        S  + +G +RI+    +G  ++   L      +P
Sbjct: 64  DDARELAVHVRRMAFASEAFYRAASASGGEIAGTVRISVAEFVGIEVMPRLLAPLRERHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L+L N++ D+    AD AIR+R+P +  +L+ ++   I +  +A   YL+    P
Sbjct: 124 GLAVELVLSNENADLPGQEADIAIRMRRP-RHGALVAKRAGCIPLGFFATASYLERHGVP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS--IMQYCVLG 238
               +L +H LI  G    +  +DF     + + +GE     L+ +S+ +   M    LG
Sbjct: 183 EGATDLARHTLI--GSDRSRMDQDFTR--ELQKTLGEKLYFALRTDSHPAQLAMVRAGLG 238

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            G+  LP        +LVR++  ++      +    E L+++ ++ A
Sbjct: 239 IGVTQLP----IGERDLVRVLPGLVVAELEAWVVAHEDLRHSRRIDA 281


>gi|264678206|ref|YP_003278113.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262208719|gb|ACY32817.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 313

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 140/301 (46%), Gaps = 18/301 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR+++ LE  +G++L  R  R L+LT+ G
Sbjct: 3   DLNDMLYFVEVVERGGFAAAGRALGIPKSRLSRRVAELEAHLGVRLLQRTTRKLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +          + E   +P G +R+   + L Q +L   + EFL   P +Q
Sbjct: 63  ETFLRHGQAMRDAALAASDAVAEVQTEPRGTIRVTCPVTLAQTVLGELMPEFLKRCPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +++  +  D A+R+R  ++ S S++ ++L +      A+P  L+    P S
Sbjct: 123 VEMQVTNRPVNLVEEGVDVALRVRATLEDSGSMVVKRLDSSRQILVASPDLLQRQGTPRS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
           +++L   + +         ++  + L  V  P G+     LQ    V+  L++    + G
Sbjct: 183 LEDLQLLDSMAM-----TAVDGHSSLLLVG-PEGKEHRLQLQPRYVVDDLLTLKFAALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294
           SG+  LPDY+ +D      LV+++     P   V+  +P      G   A R+F+ FL  
Sbjct: 237 SGMCWLPDYMCQDELTRGTLVQLLPQWAPPRGIVHAVFP---SRRGLAPAVRHFLDFLGE 293

Query: 295 R 295
           R
Sbjct: 294 R 294


>gi|104781998|ref|YP_608496.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110985|emb|CAK15705.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 300

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 132/298 (44%), Gaps = 26/298 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A  QL + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLFYFARVVETGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62

Query: 64  SK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            + LH   + +       ++    SS +P G+LR++  + L    L   +  FL  YP +
Sbjct: 63  ERYLHHCQAMLLEAEMADEVVASMSS-EPRGRLRVSCPVALAHAFLPDVISRFLAQYPLV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+ ++L N+ +D+  +  D A+R+R    +  +L+ R+L    M   AAP +  + REP 
Sbjct: 122 QLDMVLLNRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIREPS 181

Query: 182 SIQEL------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            +  L      +   L+ F    P   ++   L        EPR++   ++ ++      
Sbjct: 182 ELATLPVLGAAEADRLVHFRLFGPNGRQEDVAL--------EPRLA---IDDFVVRNAAV 230

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G G   LP    +   +   LVR++ D   P   +   YP      G L A R +I
Sbjct: 231 RAGLGFTALPSMFCEQELERGELVRLLPDWSLPGGYLQAVYPH---RRGLLPAVRVWI 285


>gi|331008540|gb|EGH88596.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 305

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 134/292 (45%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +   P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSAAGAVPKGLLRVDLPVSLGRMIVIPALPEFARRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL++ 
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASRDYLQRYGTPLNLP 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L +H +I +            ++A    VD+ +       + VNS    +  C  G G+
Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMAGGVEVDQALA----CSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V        LV ++     P   +   YP   + + +++ F +++
Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290


>gi|293396999|ref|ZP_06641273.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291420470|gb|EFE93725.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 311

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 132/296 (44%), Gaps = 16/296 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +   G+F+  A +  ++ SS+SR +  LE+ +  +L YR+ R +  TE G    
Sbjct: 12  MRLFVAIVELGNFSEVARREGIAASSVSRVVQQLESALQTQLLYRNTRAVVPTEAGRLFA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +  ++   Q ELQ+   +PSG +R+   +  GQ  +   L E    +P + I+L+
Sbjct: 72  RYARSMLDQMNEAQWELQQQEHEPSGLVRLNAPVVFGQRHIAPWLAELGERFPQLNIELM 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ ID   D  D   R+   + SS+L  R   T   H  A+P YL +        +L 
Sbjct: 132 QTDEFIDPHRDATDLLFRIGV-LNSSTLHARVFATPQYHLAASPAYLAHAPALTQPADLY 190

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
           +HN + + G   P+      W         +P      L  N+  +++   + G G+ + 
Sbjct: 191 QHNCLVYRGFTGPQ-----RWFFLDSDQRWQPHTFSGSLTSNNAETLVSAALNGMGMVVF 245

Query: 245 PDYIVKD---NPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFLK 293
           PD+++ D   N  LV ++      +      +   YP A +   K++A  +F   K
Sbjct: 246 PDWLIGDALKNGTLVPVLPQFAVSTTLEPQAIAAIYPNARRPPLKVRAVIDFFVEK 301


>gi|66046279|ref|YP_236120.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256986|gb|AAY38082.1| Helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae
           B728a]
          Length = 303

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 135/306 (44%), Gaps = 13/306 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+FD + + +F  V RSGSF  AA  L +  +++SR++  LE ++  +L  R  R L LT
Sbjct: 1   MAFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLT 60

Query: 61  EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           + G   + R  S V   +E  + +L     +P G +RIA   D         +  FL  Y
Sbjct: 61  QAGEDFYGRCVSAVDGVMEAAE-QLVSGRDEPRGLVRIAAMADFFDFFSMDWVAGFLARY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCR 178
           P +Q++ +L +   D+  D  D A R    +Q S  + R+L+   H    A+P Y+    
Sbjct: 120 PRVQLEFVLSDDHADLIADRLDIAFR-GGSLQDSGYVGRQLIDEGHDTMVASPAYIAAHG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
            P S+  L  H  ++             W L   +  + E  I+     N+  ++ +  +
Sbjct: 179 LPDSLHSLHGHYCVSAAHRGGVTA----WRLLGPEAKMHEVHIASRFNANTAQALRKATL 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K
Sbjct: 235 AGLGIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDK 294

Query: 294 ARDWKF 299
            RD  F
Sbjct: 295 LRDKAF 300


>gi|322834744|ref|YP_004214771.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169945|gb|ADW75644.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 300

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +++F  V    SFT AA+ L+L +S+++  I  LE+ + I+L  R  R ++ T  G  
Sbjct: 5   DSMQLFTRVVELRSFTQAAQALNLKRSTVTDAIKQLESRLNIRLLQRTTRHVSATLDGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   +E    E+  +  +P G LR+     + ++ L   L +FL  YPDI+  
Sbjct: 65  YYQRCLRILADVEDA--EMAFAGAQPKGLLRVDVHGSMARHFLLPGLADFLAQYPDIEFY 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC IR  + ++ S ++ R L T+     A+P YL+    P +  +
Sbjct: 123 MSEGDRLVDLVREGIDCVIRAGE-LKDSDMVARPLGTLPEITCASPDYLQRFGIPETPDD 181

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  H +I F     G L+P   +    +   +R I  P  + L V+   S+ +    G G
Sbjct: 182 LAGHRMIGFRSSATGGLLPLIFQ----VQGKNREILLP--TSLSVSGAESMKEAARRGMG 235

Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +P Y +++D    +LV+I+ D    S  V   YP   + + +++ F +++
Sbjct: 236 IIQVPHYGLLEDLAQGSLVQILADFPAGSLPVSLLYPRNRQLSPRVRVFIDWM 288


>gi|298487123|ref|ZP_07005173.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298158366|gb|EFH99436.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 303

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++TE G +
Sbjct: 7   DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMGVVLLHRSTRQVSITEDGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++   G+  +   L E   LYP + I+
Sbjct: 67  VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALYPKLDIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YLK+   PLSI E
Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGVPLSIGE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H+ +    +I +    F  +  ++ P G   +     L  N      Q+C+ G G+ 
Sbjct: 186 LANHDCL----VIKERDRPFG-IWHLNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVL 240

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
           L   + V+ +    R+++  + P +     ++  +   L ++ K++    F+
Sbjct: 241 LRSLWDVRTDLAEGRLVQ--MLPEYRQDADIWAVHTSPLMSSAKVRVTVEFL 290


>gi|296389029|ref|ZP_06878504.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 301

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 133/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA +G F  AA Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    
Sbjct: 7   LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   LE     L      PSG LR++  + L    L   +  FL  YPD++++L+
Sbjct: 67  QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+  +  D A+R    +  S L+ R L+ +     AAP YL    +PL  + L 
Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLVLEHVLCAAPAYLGQHGQPLRPEALR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F            W     R  I  P     +V+S L++    + G G++L+P 
Sbjct: 187 EHECIRFS----LSGHADRWTFRKGRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       LV ++         ++  YP + +  GK + F +F+
Sbjct: 243 LYVQAELAEGRLVELLAGWKADETAIHAVYP-SRQLAGKTRVFLDFL 288


>gi|269964039|ref|ZP_06178345.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831258|gb|EEZ85411.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 299

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 153/313 (48%), Gaps = 29/313 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++ VF  V  +GS + AAE L L+ S+ SR ++ LE+++   L  R  R + LT
Sbjct: 1   MKATLDEMNVFVSVVDTGSISAAAELLSLTTSATSRALARLESKLNTTLLNRTTRRIELT 60

Query: 61  EQGS-KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           E+G   L RV + +   ++  +  L     KPSG LR+        +++   + ++   Y
Sbjct: 61  EEGQLYLDRVRN-ILASVDEAEDMLVGDKGKPSGLLRVNAASPFMLHVVAPLVAQYQQEY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I+++L  + ++ID+     D AIR+ + ++ S++   +L T  +   A+P YL     
Sbjct: 120 PEIELELTSNEENIDLLGKRTDIAIRIGQ-LKDSTMRAARLATSSIRVLASPEYLAQHGN 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GE-PRIS-CLQVNSYLSIMQ 233
           P S++EL++H L+ F          F +L   D P+    GE  RI   ++  S  ++  
Sbjct: 179 PKSVKELEQHRLLGFS--------RFEFLN--DWPLQTEAGELLRIKPVVKAESGETLRV 228

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIME-------DVITPSFTVYFCYPEALKNTGKLKAF 286
             + G G+  L D++ +++    R++E       D+  P   VY+    A   + ++++F
Sbjct: 229 MALKGDGVVCLSDFMTQNDRRNGRLVEVLPESRLDIRQPIHAVYYANAVA---SARVRSF 285

Query: 287 RNFIFLKARDWKF 299
            +F+     D  F
Sbjct: 286 IDFLKRHMNDEGF 298


>gi|254465490|ref|ZP_05078901.1| transcriptional regulator [Rhodobacterales bacterium Y4I]
 gi|206686398|gb|EDZ46880.1| transcriptional regulator [Rhodobacterales bacterium Y4I]
          Length = 294

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 120/251 (47%), Gaps = 17/251 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VAR+GS   AA +L +S + + ++I+GLE  +  +L  R  R  +LT  G    
Sbjct: 7   MRTFVEVARAGSMNAAALKLKVSNALVGQRIAGLEDHLQARLLNRTTRQQSLTAFGQVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +  ++ +  +      G+LRI   +  G   L   LK+F    P+++I+L 
Sbjct: 67  EQCQDILELVSISEGKASDQQQHLQGRLRITAPVSFGSAALMPALKKFTQAAPEVEIELF 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +++ D+  +  D A R+ + ++ SSL+Q KL    M   A+P YL +  EP +  +L+
Sbjct: 127 LSDRNEDLLAEGYDGAFRIGQ-LEDSSLMQIKLAPYKMVVCASPEYLADGFEPQTPSDLN 185

Query: 188 KHNLITFGDL------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   + F           +  E  +W          P+ + + VNS  +++     G GI
Sbjct: 186 RFRAVLFSKTGRKPWRFARGSEAIDW---------APK-AAVSVNSGQAVLSAAKAGMGI 235

Query: 242 ALLPDYIVKDN 252
           A++P+ +   +
Sbjct: 236 AMVPEVLAHGD 246


>gi|15966203|ref|NP_386556.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307308554|ref|ZP_07588256.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307317332|ref|ZP_07596772.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15075473|emb|CAC47029.1| Putative transcription regulator [Sinorhizobium meliloti 1021]
 gi|306896921|gb|EFN27667.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306900954|gb|EFN31563.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 299

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 139/286 (48%), Gaps = 11/286 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + VF  VA +G F+ AA +L+LS+S++ + +S LE  +G++LF+R  R  +LTE+G 
Sbjct: 4   FNGISVFVEVADAGGFSAAAARLNLSRSAVGKTVSRLERRLGVRLFHRTTRTQSLTEEGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +   ++ T +  L+    +  G+LRI+  +  G+  +   L++ L  +P ++ 
Sbjct: 64  LFYESCQKALGEIRTAEDLLESGRREIRGRLRISMPVLFGRQCVAPLLRDLLRSHPRLEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  +++ ID+  +  D AIR       S L+ R +    M   A+P YL+    P ++ 
Sbjct: 124 DLSFNDRVIDLLDEGFDLAIRNSPLGNGSGLMMRTVAEQRMTVCASPAYLEAHGMPRTVA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGI 241
           EL  H  I +     +  E  +W    D    E   P+   L+++   +I      G G+
Sbjct: 184 ELAAHEGIVYA----RGGEPLSWSFPSDGKAAEIVLPQTR-LRLDDLAAIADAAAAGHGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           A LP ++V++      LVR++ D     F  +  +P       KL+
Sbjct: 239 AWLPCWLVRERVQKGELVRVLTDRPGLIFKAHAVWPRTQHMLPKLR 284


>gi|330991203|ref|ZP_08315155.1| putative HTH-type transcriptional regulator ltrA [Gluconacetobacter
           sp. SXCC-1]
 gi|329761696|gb|EGG78188.1| putative HTH-type transcriptional regulator ltrA [Gluconacetobacter
           sp. SXCC-1]
          Length = 298

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 4/245 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSF+  + +   SQ +ISR I+ LE   G  LF R  R L +TE G  L 
Sbjct: 7   LHSFVRVAATGSFSAVSRETGASQPTISRHIALLEAHYGATLFARTTRSLMMTEDGRSLL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV   LET +  L       SG +R+  T   G  L    L   L  +PD+ ++L+
Sbjct: 67  PHAYEVLEILETAETALGRRRASVSGLVRLGVTTAFGLYLTS-RLGSLLEEHPDLSVELV 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+  +  D A+R+   I   SLI R+L ++H    A+  YL     P   ++L 
Sbjct: 126 MRDGFGDLVEEGLDLAVRI-GSIAEGSLIARRLGSVHRCVIASTDYLARRGTPEHPRDLL 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I +         D+ +    +           + NS  +++Q    G GI +LP +
Sbjct: 185 NHPCIAYS--YGGTRHDWQFTRKGEGETAVAASGPFRANSSEAVLQAVRAGLGIGMLPAF 242

Query: 248 IVKDN 252
            V+D+
Sbjct: 243 QVEDD 247


>gi|319791169|ref|YP_004152809.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593632|gb|ADU34698.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 308

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 123/279 (44%), Gaps = 13/279 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QLESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEERLGVKLLVRTTRRITLTHEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  + +  +  +    VK SG LR+      G+  +   +  F  L+P++ I L
Sbjct: 66  LEDCQRLLTEFQNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPLVPRFHALHPEVTISL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D++ +  DCA+R+   +  SSL+  +L        A P +L+    P    EL
Sbjct: 126 NLSDRVVDVTGESFDCAVRVGD-LPDSSLVSVRLADNRRRCVATPDFLRRHGTPKHPGEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSG 240
            +   +T   L     +   W   V    G   +  L+ +  L       +  +C+ G G
Sbjct: 185 SRFACLT---LSSDASQTRGWAFRVTTEAGVEELIHLRPSGPLDCSDGQVLHDWCLAGHG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEA 276
           IA    + V+   D   LV ++++   P   +Y  +  A
Sbjct: 242 IAWRSTWEVEAEIDAGLLVPVLDEFAAPPNGIYAVFAGA 280


>gi|254876712|ref|ZP_05249422.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842733|gb|EET21147.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 295

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 103/192 (53%), Gaps = 2/192 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT-LTEQ 62
           ++D + +F  +   G+FT  A+ L++SQS++SR+I  LE  V +KL  R++RGL  +TE 
Sbjct: 3   NFDDIFIFIKLIDIGTFTELAKHLNVSQSTVSRRIQNLEESVNMKLIKRNSRGLIEMTED 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++  +  TT  ++   S + SG L++        N+L   L  F   YP++
Sbjct: 63  GESFYMSFKDIEKQANTTLQQIVNKSKEISGTLKVGIPKLFLDNILADKLGIFYARYPNV 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++        +D+  D  D AI ++KPI SS  I + LV      YA+  Y++   +P  
Sbjct: 123 KLVFSYTAGIVDLVKDDIDIAITIKKPITSSCTI-KTLVRAKNKLYASQDYIQTYGQPSL 181

Query: 183 IQELDKHNLITF 194
           +++L+ H+++ F
Sbjct: 182 LEDLESHDIVGF 193


>gi|160899223|ref|YP_001564805.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364807|gb|ABX36420.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 310

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 134/296 (45%), Gaps = 13/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F   A SGS +  A  L L+ ++ S  +  LE E+G+ LF R  R L LT++G    
Sbjct: 9   LDIFVRTADSGSLSATARALDLTPAAASAALKRLEAELGVTLFVRSTRSLRLTQEGELFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L   + +L        G L++A   DLG+N+L   L EF   +  + ++L 
Sbjct: 69  EHCRPALAGLRQVRDQLAGGQAALRGTLQLAAPSDLGRNVLMPWLDEFQSQHAGVDLRLH 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186
           L ++  ++  +  D A R  +P Q SSL+   L   H     AAP YL+    P +  +L
Sbjct: 129 LSDRAANVYSEPVDAAFRYGRP-QDSSLVALPLSDTHRRVLCAAPSYLQERGAPATPHDL 187

Query: 187 DKHNLITFGDLIPKCMED--FNWLATVDRPIGEP---RISCLQV-NSYLSIMQYCVLGSG 240
             H+ + F  ++ + + D    W A     + EP   R+    V N   ++ ++ V G G
Sbjct: 188 AGHDCLCF--MLGEEVHDRWSFWPAGQGAAVPEPVHVRVRGRNVANDGDAVRRWAVAGRG 245

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA    + V ++     L+ +  D  T    ++   P   + T  ++A R+F+ ++
Sbjct: 246 IAYKSYFDVAEDLARGRLLALCTDWTTECVPLFLVAPSRRQFTPLVRALRDFVAVR 301


>gi|145636072|ref|ZP_01791742.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae
           PittHH]
 gi|145270594|gb|EDK10527.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae
           PittHH]
          Length = 305

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 134/289 (46%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GI  L
Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIVNL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVIYPNRRHLPIKVRAFIEFL 288


>gi|170694624|ref|ZP_02885776.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140506|gb|EDT08682.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 298

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 138/295 (46%), Gaps = 19/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++RVF  VA   SFT A++ L + +++++  +  +E  +G +L  R  R + LT  G 
Sbjct: 4   FEEMRVFVRVAERQSFTRASDDLQIPRATVTNLVKRMEERLGARLLERTTRTVRLTPDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +     S++ P G LR+     L ++ +  +L  FL  YPDI++
Sbjct: 64  AYYGRCVRLIADLEDAEGSF--SNLAPKGLLRVNLQGTLARHFVVPSLPAFLTRYPDIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL+   EP    
Sbjct: 122 TIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLEKYGEPADPS 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLG 238
            L  H  + +     G  +P    +F+ +   + P+  P  +S   V  Y       + G
Sbjct: 181 ALAAHRAVNYVSSATGKPVPL---EFS-IEGRNTPMLLPGAVSVTGVELYTG---SALAG 233

Query: 239 SGIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  +P Y V+D     R   I+     PS  V   YP+  + + +++ F  ++
Sbjct: 234 LGIVQVPRYRVRDELAAGRLKIILAGFPPPSLPVSVLYPQNRQLSSRVRVFAQWL 288


>gi|167923505|ref|ZP_02510596.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
          Length = 306

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++ +S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 5   DRFDVFRAVVEAGSFTGAANVLNQARAVVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++++
Sbjct: 65  FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178
           L       D+  D  D AIRL +  Q   L  R +   T  +   A+P     H +    
Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++  L +        +    + D +    V RP  +P +     +   +  Q    G
Sbjct: 185 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 241

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290
            G+ALLP+++V+D+     +++ +    F    VY  YP A     K++A+ +FI
Sbjct: 242 GGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 296


>gi|241664539|ref|YP_002982899.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240866566|gb|ACS64227.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 306

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 12/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GS + AAE + +S+  IS+ ++ LE  +  +L  R  R L+LTE G+     
Sbjct: 9   IFVQVVERGSLSAAAEAMGMSRGVISKALARLEARLQTRLLQRTTRRLSLTEAGAAFFEK 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           + E    ++  +  +     +  G LR++        LL   L  F   YP +QI L ++
Sbjct: 69  SREGLALVDAAEQAVSALRDEARGTLRVSAPASYAVTLLAPLLGAFQARYPAVQIDLDMN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+     D AIR+   ++ SSL+ R+L       Y AP Y +    P S ++L  H
Sbjct: 129 DRYADLVAGRIDVAIRI-GMLEDSSLVARRLANCAHAIYGAPSYFRERGIPQSPEDLRNH 187

Query: 190 NLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           N + + +         +W+   A   R I     S L  NS L + +    G G++L P 
Sbjct: 188 NCLVYANYDGP----HDWVLTDAAGHRHIAHVAGSMLANNS-LVLREAARSGLGVSLGPA 242

Query: 247 YIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+V+D+    R   ++ D       ++  + + +    K++AF +F+
Sbjct: 243 YLVRDDVAAGRLQAVLTDYTAREVPLHAVFTQRVHLLPKVRAFVDFL 289


>gi|332285571|ref|YP_004417482.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330429524|gb|AEC20858.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 296

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 145/300 (48%), Gaps = 29/300 (9%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L +F  +AR+ S   A  +L ++ +++S+++  LE  + ++L  R  R L +T +G 
Sbjct: 4   YNDLELFASIARTNSLVGAGRELGITGAAVSKRLMALEQRLAVRLVQRTTRTLRITPEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +    +  +L+  +  L+  + KP+G LRI  ++  G+ ++   L EF  LYP++++
Sbjct: 64  RYLQEGKRLLAELQELEQTLRGVTAKPTGLLRINASLGFGRAIVSTILAEFAALYPELEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L ++ +++  +  D  IR+   ++ + L  RKL +      AAP YL     P ++ 
Sbjct: 124 QLHLSDRALNLVEEGYDIGIRV-GELRDARLHARKLRSNRRLICAAPGYLDKHGTPANLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISCLQVNSYLSI------M 232
           +L KH++I               L   D+  G      E R   L+V + +S       +
Sbjct: 183 DLAKHSVIV--------------LHENDQRFGTWHLQNEARYENLKVRARMSTNDGEAAL 228

Query: 233 QYCVLGSGIALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + + G G+ L  ++ ++       +R++      +  VY  YP   + + K +AF +F+
Sbjct: 229 SWALAGFGLLLRSEWSIQALLQEEKLRVVLPDWYETADVYAVYPTQDQLSAKTRAFIDFM 288


>gi|325915661|ref|ZP_08177966.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538078|gb|EGD09769.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 290

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 141/296 (47%), Gaps = 20/296 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +++ LR F  VA +G  + AA +L +++S +SR++  LE  +GI+L  R  RG  +TE 
Sbjct: 1   MEFEDLRTFVEVADAGGVSPAARRLGVAKSIVSRRLIRLEDALGIQLLARTTRGAAVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118
           G+      + +       ++++   ++ P+    G+LRIA  +  G   L   L E    
Sbjct: 61  GATFREHAARM-----CAEMDVARETILPAGDLRGRLRIAAPLTFGPTHLAPVLAELASR 115

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P +Q+     ++ +DI  D  DCAIRL   +  S+L+ R++  +     A P YL+   
Sbjct: 116 HPALQVHACYSDRFVDIVADGFDCAIRLGY-LTDSNLVARRIAPMRGSLMATPAYLRKHG 174

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           EP + Q L  H  +  G    + M D + L T+      PR    + ++  +I    + G
Sbjct: 175 EPDTPQALLTHEALLQGTESWRFM-DGDKLVTI-----HPR-GRFKADNGTAIAAAALAG 227

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GIA LPD++V +   +  LVR+M    +P   +Y     A     K++   + + 
Sbjct: 228 LGIAALPDFLVAEHLASGALVRVMTKYPSPEAGLYVVRAPATHPARKMRVLTDLLI 283


>gi|260466991|ref|ZP_05813172.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029191|gb|EEW30486.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 305

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 141/296 (47%), Gaps = 23/296 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  V  +GSFT A ++L ++++ +S QI  LE E+G  L  R  R +T TE+G  
Sbjct: 8   NRLVYFTTVMETGSFTVAGDRLGVAKAVVSHQIGKLEEELGATLMRRTTRRITPTEEGRL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +  + E    E+   +V+P+G LR+   +D G  ++   +  +L  YP ++++
Sbjct: 68  FYDRATIILREAEAAYGEISHGAVEPAGMLRLTAPLDYGAKVVAPVMAAYLKTYPQMRVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            I D+   ++  +  D  IR+   +  SS   R+L TI     A+P +  +   P  +  
Sbjct: 128 AIFDDAVSNLVDEQIDLGIRVGW-LADSSNQARRLGTIRQIVVASPAFAASL--PSDVGP 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYCVL- 237
               +L   G+   + +    WL + D   GE       P I C +  + L+    CVL 
Sbjct: 185 HQARSLAWVGNAQLRGIG--QWLFSRD---GETVLTELNPVIMCDKSPAALA----CVLA 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+ + PDY V D+     LV +  D   P+  ++  +P A     K++AF + +
Sbjct: 236 GIGLGIFPDYSVDDDIAEGRLVPVFADWTLPTGGIHAVFPPARFRPAKVRAFVDLL 291


>gi|146308120|ref|YP_001188585.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576321|gb|ABP85853.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 309

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 132/288 (45%), Gaps = 14/288 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  V + GS T AAE L +S++ +SR ++ LE   G++L +R  R L+LT  G ++  
Sbjct: 8   QVFVEVVQRGSQTAAAEALEMSRAMVSRYLAELEHWAGVRLLHRSTRKLSLTAAGEQMLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    E  Q   Q     P G LRI  +    Q  L   L+EF   YP + I L++
Sbjct: 68  QCREMLALAENMQALGQGLDDAPRGTLRITCSQSFAQAWLVHALQEFTERYPQVSIDLLV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++     D A+R+   +   +LI R+L        A+P YL     P   QEL +
Sbjct: 128 GSEALNLVEARIDLALRITNQL-DPNLIARRLGVCRSVVCASPAYLARHGTPQHPQELAR 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLP 245
           HN +++     + + +F      +R      +S    L  N  + +++  + G+GI+L P
Sbjct: 187 HNCLSYA-YFGRSLWEF------ERQGEASAVSVAGSLSANESMVLLEAALAGAGISLQP 239

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y V        LV+++ D       ++  Y    +    ++   +FI
Sbjct: 240 LYSVAGLLREGRLVQLLADYRPAELGIHALYGTRRQMLPAMRLLLDFI 287


>gi|24374979|ref|NP_719022.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24349705|gb|AAN56466.1|AE015783_9 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 307

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 129/282 (45%), Gaps = 18/282 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  +VF  +   GS   AAE L +S+S ++R +S +E   G +L +R  R L+LT  G +
Sbjct: 5   EAAKVFVTIVERGSMIGAAEVLDMSRSMVTRYLSEMEEWSGARLLHRSTRRLSLTSAGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +    +         S +P G LRI+ +  +   +L   ++ +L  YP   + 
Sbjct: 65  VLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLILPTVVRPYLAQYPQASVN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + ++ +D+  +  D AIR+   +   SLI R+L        AAP YL +    +  ++
Sbjct: 125 FHVSSQTVDLVAERIDMAIRITNEL-DPSLIARRLGECESVVCAAPRYLASHSPIIQPED 183

Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGE--------PRISCLQVNSYLSIMQY 234
           L +HN +T   FGD++ +     N L T   P G+        P    L  N  + ++  
Sbjct: 184 LTRHNCLTYSYFGDVMWR-FTQINHLVT--HPDGKSAGQQFNIPVKGNLSANDSMVVLNA 240

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            + G GIA+ P + VK   ++  LV ++ D    S  VY  Y
Sbjct: 241 TLAGEGIAMQPVWAVKSYLNSGELVPLLRDFKPQSLGVYGVY 282


>gi|325121849|gb|ADY81372.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 311

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++  F  V  S SF+  A QL  + S++SR ++ LE  +G +L YR  R L L+E G +
Sbjct: 11  NEMATFVKVVESESFSETARQLGTTPSAVSRAVARLERALGTRLLYRTTRKLRLSESGQQ 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I IQ
Sbjct: 71  VYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDIQ 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    +
Sbjct: 131 MLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGIPNHPHD 189

Query: 186 LDKHNLITFGD 196
           L +H  I  G+
Sbjct: 190 LKQHECIYLGE 200


>gi|254559003|ref|YP_003066098.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254266281|emb|CAX22042.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens DM4]
          Length = 298

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 122/275 (44%), Gaps = 17/275 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT AA +L +SQS++S+ +  LE  + ++L  R  R ++ TE G +L 
Sbjct: 9   LAAFLTVARERSFTRAAAKLGISQSALSQTVRNLEERLKVRLLTRTTRSVSPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R        +ET    L E+  +P+G  RI       + +L   + + +  +PDI ++++
Sbjct: 69  RTVGPHLDAVETELAALGETLDQPAGNFRITAIEHAAETILLPGIAKVVGEHPDIHVEVV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    DI     D  +R  + I    +  R    + M    AP Y+     P   QEL 
Sbjct: 129 VDYGLTDIVSHRFDAGVRAGEDIAKDMIAVRVGPDMRMVVVGAPSYIAMRGTPRIPQELV 188

Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            H+ I     T G L       + W    D RP+       L  N+   I+    +G G+
Sbjct: 189 GHSCISLRLQTSGGL-------YAWEFEKDGRPVNVRVEGGLVFNTPRLILNAARMGLGL 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           A +P        ++  LV+I++D   PSF  Y  Y
Sbjct: 242 AFVPSDQAGPLIESGELVQILDD-WCPSFPGYHLY 275


>gi|226199649|ref|ZP_03795202.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225928235|gb|EEH24269.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 360

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 136/302 (45%), Gaps = 14/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 64  DLPALATFARIVVAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 123

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 124 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 183

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 184 VQMQLTDAVVDLIAHDVDVAVRI-GMLADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 242

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 243 ADLCAHRCIVLGE-----QPRVEWRFDGSHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 297

Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
              + V   P+L      R++ +  + +  ++  YP       +++ F +++ ++  R W
Sbjct: 298 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 355

Query: 298 KF 299
           ++
Sbjct: 356 RW 357


>gi|119094203|gb|ABL61025.1| transcriptional regulator [uncultured marine bacterium HF10_25F10]
          Length = 300

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 120/251 (47%), Gaps = 12/251 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M ++ D L  F  VA  G  + AA +L   +S+ISR I+ LE ++G++LF R  R L LT
Sbjct: 1   MKWNVDHLPAFVAVAEIGGISVAARRLGKPKSTISRAIARLEEDIGLQLFVRGPRSLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             GS+ ++    +  ++E    EL   S  P G L +A  +   + ++  +L  F   YP
Sbjct: 61  HDGSQFYQHAVRILEQVEAASAELAGLSETPRGTLSVALPMAFAREIVGPHLARFQAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ L + +   D+  D  D A+ +   +  S LIQ++L+   +   A+P       E 
Sbjct: 121 DIRLDLRIGSGQPDLIRDAIDMAV-IVGSVTDSDLIQQRLINTPLIWIASPEVAATLPES 179

Query: 181 LSIQELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
             + EL   +LI+     +G+  P  + D N      +  GE     +QVN  + + ++ 
Sbjct: 180 PGLDEL--ASLISAVETRYGE-TPVTVVDKNGAIRDIKLQGE---QVMQVNDPILLREFV 233

Query: 236 VLGSGIALLPD 246
               G++  PD
Sbjct: 234 CTSGGLSFAPD 244


>gi|150395824|ref|YP_001326291.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027339|gb|ABR59456.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 310

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 123/259 (47%), Gaps = 17/259 (6%)

Query: 1   MSFDWDKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M    D LR      RS   GS   AA +L ++ ++ S+ I+ LE  +GI+L  R  R  
Sbjct: 1   MELLMDSLRGIESFVRSVEEGSIAAAARRLGITPAAASQNIARLERALGIRLLVRTTRQS 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   +    EV  +LE     +   + +P G+L+IA+++  G++++   +  F  
Sbjct: 61  GLTEAGRLYYDRVREVISELEQAAAAVSVLNEEPRGRLKIASSVAFGRHVIAPLVPSFAA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPD+ I+L++ ++ ID   +  D ++R  + ++   LI RKL ++ +   AAP Y+   
Sbjct: 121 RYPDVSIELVVTDRSIDHIGEGIDISVRFAQQLE-PGLITRKLGSVPLVICAAPSYIARR 179

Query: 178 REPLSIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSI 231
             P + ++L  H+ + +     G L       F W    D    EP +    V N   ++
Sbjct: 180 GRPETPEDLRHHDCLIYRFAGHGRL-------FRWAFVRDGLRFEPELRPTIVSNDIDTL 232

Query: 232 MQYCVLGSGIALLPDYIVK 250
            Q  + G+GI  L  +I  
Sbjct: 233 AQMAIAGAGITRLGTFIAN 251


>gi|71281636|ref|YP_270096.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147376|gb|AAZ27849.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 305

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 140/281 (49%), Gaps = 11/281 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +++F  VAR+   + AA++L +  S++SR++  LE  +  KLF R   G  LT  
Sbjct: 1   MNWDDIKIFLEVARAERLSTAAKRLTMDASTVSRRLHKLEESIATKLFDRTQDGHVLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++    +     +  ++ +  G +RI  T  LG   +  NL      +P I
Sbjct: 61  GEMLLTSACKMEQDAQHALSSIHNNNEENCGLVRIGVTEALGNFFVSPNLLTLQQQHPSI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL----VTIHMHAYAAPHYLKNCR 178
            + L+L ++ + IS + AD AI + +P +S+S+I  KL    + +++H     H LK   
Sbjct: 121 DVHLLLFSRYVKISRNEADIAIAVERP-KSTSMIVSKLCDYKLQLYVHQDYLDHNLKQYP 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL- 237
           + +++  L +H  +T+ D +    +  +++  +DR +     +     S +S  QY  + 
Sbjct: 180 QGITLDNLAEHKWVTYVDNLI-FTDQLSYIKELDRYLSGELKANFSSTSIIS--QYFAIK 236

Query: 238 -GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC-YPEA 276
            G GI +LP ++   + +L+++    IT S + +   +PE+
Sbjct: 237 SGLGIGILPCFLADQDKSLIKLHSQDITISRSFWLVTHPES 277


>gi|126172880|ref|YP_001049029.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|304410720|ref|ZP_07392338.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307304815|ref|ZP_07584565.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|125996085|gb|ABN60160.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
 gi|304351204|gb|EFM15604.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306912217|gb|EFN42641.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 296

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 126/277 (45%), Gaps = 7/277 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR GSFT AA  L ++QS++S+ ISGLET + I+L  R  R ++ T
Sbjct: 2   MKRNLNDLLCFVTVAREGSFTRAAALLGVTQSALSQAISGLETRLEIRLLTRTTRSVSAT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L       + ++E+    L     KP+G +RI     + + LL   L   L  YP
Sbjct: 62  EAGERLLNAIGNRFDEIESELDALTAMRDKPAGTVRITCGDFVLRTLLIPKLSPLLHNYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++  ++    DI  D  D  IRL   I    +         M A A P Y      P
Sbjct: 122 DIKVEFDVNYGFRDIVADRFDAGIRLGDTIDKDMIAIPIGPHQTMAAVATPAYFAQHPIP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGS 239
              Q+L +HN I      P     + W    D + +       L  N+   I+   +  +
Sbjct: 182 KHPQDLIEHNCINI--RFPTHGGLYVWEFEKDGKQLNVHVDGQLIFNASHHIVDAALQSN 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           GIA LP+   + +     LV+++ED  + SF  Y+ Y
Sbjct: 240 GIAYLPEAEFEPHIKAGRLVKVLED-WSLSFAGYYLY 275


>gi|298717287|ref|YP_003729929.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361477|gb|ADI78258.1| Uncharacterized HTH-type transcriptional regulator yafC [Pantoea
           vagans C9-1]
          Length = 292

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 100/190 (52%), Gaps = 1/190 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR++  V  +G+FT AAEQL LS+  +SR+++ LE  +G++L  R+ R L++T+ G  
Sbjct: 4   EDLRIYIAVIHAGNFTAAAEQLMLSKQYVSRRMAALEASLGVRLLIRNTRKLSVTDAGLL 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    +  +++  ++ + E      G  RI   +  G + L   + EFL  +P +Q Q
Sbjct: 64  FAQHAQRILDEIQEAELAVSEQQQTLRGTFRINLPMSFGMSHLSPLIAEFLSHHPALQFQ 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D+  +  D AIR+   +  S+LI R L  +      +P YLK    P    E
Sbjct: 124 IELADRYVDVIGEGVDMAIRI-GTLADSTLIARPLGELKRVICCSPDYLKRAGTPQHPDE 182

Query: 186 LDKHNLITFG 195
           L +H  + +G
Sbjct: 183 LLQHACLRYG 192


>gi|270262473|ref|ZP_06190744.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043157|gb|EFA16250.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 310

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  VA  GS + AA  L L+Q ++S+QI+GLE ++G +L +R  R ++LT+ G   +
Sbjct: 7   MKTFVRVAELGSLSAAARDLGLTQPAVSQQIAGLEQQLGTQLLFRSTRAVSLTDAGGGYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   ++  +  L   + +  G LRI      GQ  L      F   +P++ I+L+
Sbjct: 67  RQIKPILAAVDEAEEALHGLNRRLQGNLRIHAPTGFGQQHLTPLAIAFQQRHPELNIELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++  D+  +  D AIR  + + +   + R+L  +     A+P YL     P +   L 
Sbjct: 127 LDDRRADVIGEGIDVAIRFGE-LSAPGTVARRLGELQRILVASPAYLAAHGMPQTPAALT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALL 244
            H  I +  L      D + L T+  P G   ++     + N+  S++     G GI   
Sbjct: 186 AHAHIRYSGL-----SDGDTL-TLIGPQGAEMVNVRPVFRANNTFSLLAAIESGLGIGGA 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              ++        LV+++     P   ++  YP A    GK++A+ +++ 
Sbjct: 240 QRPLIGRQLAAGTLVQVLPAWHYPPMALHAVYPAARFIPGKVRAWVDYLL 289


>gi|241668177|ref|ZP_04755755.1| transcriptional regulator, LysR family protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 294

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 103/192 (53%), Gaps = 2/192 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT-LTEQ 62
           ++D + +F  +   G+FT  A+ L++SQS++SR+I  LE  V +KL  R++RGL  +TE 
Sbjct: 2   NFDDIFIFIKLIDIGTFTELAKHLNVSQSTVSRRIQNLEESVNMKLIKRNSRGLIEMTED 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++  +  TT  ++   S + SG L++        N+L   L  F   YP++
Sbjct: 62  GESFYMSFKDIEKQANTTLQQIVNKSKEISGTLKVGIPKLFLDNILADKLGIFYARYPNV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++        +D+  D  D AI ++KPI SS  I + LV      YA+  Y++   +P  
Sbjct: 122 KLVFSYTAGIVDLVKDDIDIAITIKKPITSSCTI-KTLVRAKNKLYASQDYIQTYGQPSL 180

Query: 183 IQELDKHNLITF 194
           +++L+ H+++ F
Sbjct: 181 LEDLESHDIVGF 192


>gi|170696157|ref|ZP_02887292.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138972|gb|EDT07165.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 335

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 130/293 (44%), Gaps = 14/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R+F  VA + SF+  AE   ++ + ++R++  LE  +  +LF R  R + LT+ G+
Sbjct: 4   LETIRIFVKVADTSSFSRTAEHFAVTTAVVTRRVVALEKRLDARLFRRTTRHVALTDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   ++  ++ +     +  G LRIA+ +  G   L   LK F   YP +  
Sbjct: 64  TFLESARRILDDIDEAEMAVAGQERRACGVLRIASPVAFGLRHLSPILKSFRDAYPLVMP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I++     D  I        +SL+ R+  +  M   A+P YL+    P ++ 
Sbjct: 124 HVALCDDTINLVERRVDVVIVPEVEASGNSLVTRRFASSPMQLVASPMYLQRHGVPGTVA 183

Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240
            L+ H ++   G    +C+     L       G+ R    S +  NS   + +  V G G
Sbjct: 184 ALNDHVVLQHSGKQFAECLRRLERL-------GDGRCHPDSLIMSNSLAMLHKMSVDGHG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA+LP Y+ +   D+  LV ++  +  P   +   +        +++AF +FI
Sbjct: 237 IAVLPAYLAEPDIDSGLLVNVLPGIDMPRLDLSVAFETRHNMPARIRAFIDFI 289


>gi|148547085|ref|YP_001267187.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511143|gb|ABQ78003.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 300

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 12/266 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F     +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L+LT +G + +   
Sbjct: 10  FVRTVETGSFSSAGRDLGLGQPNVSRYVAALEDHLKTRLLHRSTRKLSLTSEGERYYADA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   +  ++  L+ + V PSG LR+A    L    +   +  FL LYP++ + L +++
Sbjct: 70  RRILDAVAESESALK-NDVPPSGLLRVACPTALAHTFIVPEIPRFLSLYPEMTLDLQIND 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +++  + AD A+R+       +L  ++L +      A+  YL     P + ++L+ H+
Sbjct: 129 RFVNLVDEGADLALRIGH-FDDKTLRTKQLGSFKRVCVASSDYLAKRGTPSTPEDLENHD 187

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            I +  L       F     VD P+       L+VNS  +  +    G GIA  P+++ +
Sbjct: 188 CIIYTLLSTGATWRFR---NVDIPV----TGKLRVNSPEATRELVNAGVGIAQGPEWLYE 240

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCY 273
               N NL  I+++   P   + F Y
Sbjct: 241 AGLSNGNLKLILQEFYPPPVPIQFVY 266


>gi|167035657|ref|YP_001670888.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862145|gb|ABZ00553.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 316

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 10  ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N    
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQDYLDNHAPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L KH  I++ D +    E   +LA +         S   +  Y + +Q    G G
Sbjct: 189 RQVADLAKHPFISYVDDLAFSSE-LLYLANLIPSASAHLRSTSVIAQYTAALQ----GRG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +P LV ++ + I  +   +    E L+   ++    ++I
Sbjct: 244 LAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 293


>gi|217974764|ref|YP_002359515.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217499899|gb|ACK48092.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 296

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 126/277 (45%), Gaps = 7/277 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR GSFT AA  L ++QS++S+ ISGLET + I+L  R  R ++ T
Sbjct: 2   MKRNLNDLLCFVTVAREGSFTRAAALLGVTQSALSQAISGLETRLEIRLLTRTTRSVSAT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L       + ++E+    L     KP+G +RI     + + LL   L   L  YP
Sbjct: 62  EAGERLLNAIGNRFDEIESELDALTAMRDKPAGTVRITCGDFVLRTLLIPKLSPLLHNYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++  ++    DI  D  D  IRL   I    +         M A A P Y      P
Sbjct: 122 DIKVEFDVNYGFRDIVADRFDAGIRLGDTIDKDMIAIPIGPHQTMAAVATPAYFAQHPIP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGS 239
              Q+L +HN I      P     + W    D + +       L  N+   I+   +  +
Sbjct: 182 KHPQDLIEHNCINI--RFPTHGGLYVWEFEKDGKQLNVHVDGQLIFNASHHIVDAALQSN 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           GIA LP+   + +     LV+++ED  + SF  Y+ Y
Sbjct: 240 GIAYLPEAEFEPHIKTGRLVKVLED-WSLSFAGYYLY 275


>gi|110635169|ref|YP_675377.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286153|gb|ABG64212.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 306

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 10/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  V   G  + A   L +S +  S +I  LE  +G++L  R  R LT TE G  
Sbjct: 5   DNLAVFVRVVELGGLSAAGRDLRISPAVASNRIKELEKHLGVRLLNRTTRQLTATEHGRV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   L+  +  +   S +P G +R+   + LG+ L+   + EF   YP I+++
Sbjct: 65  FYDGAKRVLEALDEAEGAVAALSGQPRGTIRVTAPLGLGKRLIASGIPEFRERYPQIEVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++D+DI  +  D A +L   +++SSL  R ++       A+P YL+   EP   ++
Sbjct: 125 LRLSDRDVDIMREGIDVAFKL-GLLENSSLRMRGIMDCERVLAASPVYLERRGEPERPEQ 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L  ++H+ +      P   E F  LAT + P           +    I  + + G GI  
Sbjct: 184 LVEEQHDCLML--RFPGVREYFWTLATPEGPKKFEVRGPFDTDDGDVITGWALAGHGIIN 241

Query: 244 LPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P +     ++D   L  I+      + T+   YP       K++   +F+
Sbjct: 242 KPRFEIEPFIRDG-RLKIILAKTPPTTVTLAAVYPHKKLQDPKVRLLVDFM 291


>gi|209518362|ref|ZP_03267186.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501181|gb|EEA01213.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 295

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 129/290 (44%), Gaps = 17/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR +   AR+GSF+ AA +L++  S ++++I+ LE  +G  LF R  R +T T  G+   
Sbjct: 7   LRAYVATARNGSFSAAARELNVVPSVVTKRINELEATIGASLFERTTRAVTPTSLGASRV 66

Query: 68  RVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +++  KL+     +   S +P    G LR+     L    L+     F  ++P + +
Sbjct: 67  EQATQLLRKLDEL---ISGPSARPEDVEGHLRVKVPTALATTRLRPAFARFQSMFPKVNL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ I    D  D AI +   +    +++  L  IH+   A+P Y+     P   +
Sbjct: 124 EIALLDRQISPVEDGYDLAIGVVL-LHPGGVVEEVLCPIHLLVCASPDYIARNGVPAHPR 182

Query: 185 ELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  ++ +TF    P   E  F       R    PR +    N +  ++   + G+G+ L
Sbjct: 183 ELPDYDCMTF---FPAHAEWRFEKNGASVRVALRPRFTS---NDWFLLLTAALQGNGLTL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPDY+  D      LV ++ D   P   +    PE       L++  N +
Sbjct: 237 LPDYVAGDALKTGKLVHVLPDWTVPPGEIRAVIPEYRAADVALRSLLNIL 286


>gi|163857149|ref|YP_001631447.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163260877|emb|CAP43179.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 302

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 132/289 (45%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++ RVF  VA  GSF  AA  L + ++S+S  +  LE +VG +L +R  R + +T  G 
Sbjct: 4   FEQYRVFAQVAEMGSFIKAANALGMPRASVSAAVQQLEAQVGARLLHRTTRQVRVTSDGM 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +  ++E      Q    + SG+L I     + + L+   L   L  +P +QI
Sbjct: 64  QLLDRVRLLLAEVEDIDQLFQAGQRQVSGRLNIDAPSRIARRLIAPMLPGLLRRHPRLQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+  +  DC +R+   +  SSL+ R L  + M   A+P YL+   EP    
Sbjct: 124 SLGCTDRAIDLIREGVDCVVRV-GTLHDSSLVARPLGHVSMANCASPAYLREFGEPRQPG 182

Query: 185 ELDK-HNLITF--GDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSG 240
           +L   H ++ +    L  +   ++       R I  P R+    V +Y++    C+ G G
Sbjct: 183 DLSSGHWVVGYAPAGLGRQAAWEYQQRDGNVRVIELPSRVLVDNVENYIAC---CLAGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  +P + V+       LV +M D   P   V   YP     + +L AF
Sbjct: 240 LIQIPRFDVQHLLAAGALVEVMPDSPAPPMPVTLLYPHRRPRSRRLIAF 288


>gi|110643304|ref|YP_671034.1| transcriptional activator TtdR [Escherichia coli 536]
 gi|170682678|ref|YP_001745332.1| transcriptional activator TtdR [Escherichia coli SMS-3-5]
 gi|215488391|ref|YP_002330822.1| transcriptional activator TtdR [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218701831|ref|YP_002409460.1| transcriptional activator TtdR [Escherichia coli IAI39]
 gi|218706685|ref|YP_002414204.1| transcriptional activator TtdR [Escherichia coli UMN026]
 gi|293406673|ref|ZP_06650599.1| transcriptional activator TtdR [Escherichia coli FVEC1412]
 gi|293416499|ref|ZP_06659138.1| transcriptional activator TtdR [Escherichia coli B185]
 gi|298382412|ref|ZP_06992009.1| transcriptional activator TtdR [Escherichia coli FVEC1302]
 gi|300818825|ref|ZP_07099031.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300901441|ref|ZP_07119526.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300937457|ref|ZP_07152283.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|301021851|ref|ZP_07185814.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|312968597|ref|ZP_07782806.1| HTH-type transcriptional activator ttdR [Escherichia coli 2362-75]
 gi|331654659|ref|ZP_08355659.1| HTH-type transcriptional activator TtdR [Escherichia coli M718]
 gi|118574170|sp|Q0TD46|TTDR_ECOL5 RecName: Full=HTH-type transcriptional activator ttdR
 gi|110344896|gb|ABG71133.1| hypothetical transcriptional regulator YgiP [Escherichia coli 536]
 gi|170520396|gb|ACB18574.1| HTH-type transcriptional activator TtdR [Escherichia coli SMS-3-5]
 gi|215266463|emb|CAS10901.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218371817|emb|CAR19672.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|218433782|emb|CAR14699.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|284923088|emb|CBG36181.1| LysR-family transcriptional regulator [Escherichia coli 042]
 gi|291426679|gb|EFE99711.1| transcriptional activator TtdR [Escherichia coli FVEC1412]
 gi|291431855|gb|EFF04838.1| transcriptional activator TtdR [Escherichia coli B185]
 gi|298277552|gb|EFI19068.1| transcriptional activator TtdR [Escherichia coli FVEC1302]
 gi|300355143|gb|EFJ71013.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300397867|gb|EFJ81405.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|300457492|gb|EFK20985.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300528610|gb|EFK49672.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|312286815|gb|EFR14726.1| HTH-type transcriptional activator ttdR [Escherichia coli 2362-75]
 gi|323188496|gb|EFZ73781.1| HTH-type transcriptional activator ttdR [Escherichia coli RN587/1]
 gi|331048041|gb|EGI20118.1| HTH-type transcriptional activator TtdR [Escherichia coli M718]
          Length = 310

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LVR++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|313499116|gb|ADR60482.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 300

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 24/297 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A  QL + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  + E     +   S +P G+LR++  + L    L   +  FL  YP +Q
Sbjct: 63  ERYLHHCQAMLLEAEAADETVASMSSEPRGRLRVSCPVALAHAFLPDVISRFLEQYPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++L N+ +D+  +  D A+R+R    +  +L+ R+L    M   AAP +  + REP  
Sbjct: 123 LDMVLLNRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIREPDE 182

Query: 183 IQEL------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +  L      +   L+ F  L P   +    L        EPR++   ++ ++       
Sbjct: 183 LASLPVLGAAEADRLVHFRLLGPHGKQQEISL--------EPRLA---IDDFVVRNAAVR 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G   LP    ++      LVR++ D   P   +   YP      G L A R +I
Sbjct: 232 AGLGFTALPSMFCEEELERGELVRLLPDWSLPGGYLQAVYPH---RRGLLPAVRVWI 285


>gi|217979461|ref|YP_002363608.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
 gi|217504837|gb|ACK52246.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 299

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 140/298 (46%), Gaps = 14/298 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  V   GSF  AA QL +  ++ SR++  LE+ +G +L  R  R L +T+ G +
Sbjct: 5   DDLITFVRVVERGSFIAAARQLGIPPATASRKVQDLESRLGAELLRRTTRRLVVTDAGRE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   ++  + ++  ++  +  + KPSG LR+     +G  L+   L +F  L P++QIQ
Sbjct: 65  VYERAAQGLNLIDEAELVAKTHTSKPSGVLRVLAPYAIGGLLIDRMLSDFQKLCPEVQIQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+N+ +D+     D A+R+   ++ S  + R L+       A+P YL       SI++
Sbjct: 125 LTLNNEPLDLIEHGFDVALRI-GALKDSGYVVRHLLNGERRIVASPAYLAANGPIESIED 183

Query: 186 LDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L+ H  +  +          +F+  A   +    PRI+    N     + + + G G A+
Sbjct: 184 LETHAFLAASIDSSGGAAAYNFSNGAEAKQLTLSPRIAS---NEPSVALNHALNGEGFAI 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L ++ V+  P+L      V+ P +           +P    +  K++ F +F+   +R
Sbjct: 241 LAEFYVR--PHLEDGALKVVLPQWHSAEDLCASLIFPRHATSDPKIRMFIDFLGGSSR 296


>gi|152985802|ref|YP_001348163.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960960|gb|ABR82985.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 307

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 133/299 (44%), Gaps = 31/299 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   A +GSF+  AE+L  + S++++ ++ LE E+G +LF R  R L LTE G  
Sbjct: 5   NALAMFVATAETGSFSRGAERLGKTPSALTKAVAHLEAELGARLFERTTRSLALTEAGQI 64

Query: 66  LHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                 +    L T   +IEL ES ++  G+LR+A         LQ     FL  +P I 
Sbjct: 65  YLEAARQSLETLRTAGQEIELLESELR--GELRLAAPPSFAAAFLQQACASFLEAHPRIS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ LD   +D+S    D  +R   PI    L+ R L    +   A+P YL     P   
Sbjct: 123 LRVDLDETFLDLSEGGYDLGLR-DGPIDLPGLVARPLAPNQIVLCASPAYLARQPAPQGP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVN--------SYLSIMQ 233
           ++ ++H  + F    P   + F W+    + + I +PR      N             +Q
Sbjct: 182 EDFERHAWLVFQH--PSLDQHFWWMERGGIRQRIDQPRPRLASDNYDFLLAHLLAGLGLQ 239

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED------VITPSFTVYFCYPEALKNTGKLKAF 286
           +C   S   LL +        LVR++ D         PS  ++  YP   +NT K++AF
Sbjct: 240 FCPQWSVAPLLAEG------RLVRLLGDHHFDPGPFGPS--IHVLYPGHRRNTRKVRAF 290


>gi|323499606|ref|ZP_08104575.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323315346|gb|EGA68388.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 294

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 145/292 (49%), Gaps = 17/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF  VA   SFT AAE L++ ++ +S+ ++ LE+E+  +L +R  R L+LT+ G  
Sbjct: 5   DDMMVFAKVADKRSFTLAAEDLNIGKARVSQIVTRLESELNTRLLHRTTRSLSLTDSGVA 64

Query: 66  LHR---VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            ++     SE+ H+  T   E+Q  +  PSG +R++T        L   L +FL  YPDI
Sbjct: 65  YYQKCLAISELAHEANT---EIQNVNQVPSGVIRLSTP----STTLVSVLSDFLKRYPDI 117

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ +I  +   ++     D A+R    ++ SSL   KL        A P YL    +  S
Sbjct: 118 QLDIIESDSYSNLIESRCDIALRASSSLEDSSLYAIKLGDFTDMICATPKYLSQFPQVTS 177

Query: 183 IQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++L + + ++   +  +    F N    + +    PR+   QV + +S+ ++ +   G 
Sbjct: 178 VEDLLQMDWVSHHIVHGEKQLTFTNAQGEITKLQHAPRV---QVRTSISVREFVLNDLGF 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A++P ++V+   +   ++RI+ +V      +Y  Y E      +++A  +F+
Sbjct: 235 AIMPSFMVQEALEQGQVMRILPEVHNHKIPLYAVYQEKAMMPLRVRALIDFL 286


>gi|300905800|ref|ZP_07123534.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|301301899|ref|ZP_07208033.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|300402399|gb|EFJ85937.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300842880|gb|EFK70640.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|315256972|gb|EFU36940.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
          Length = 310

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 19/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEV---YHKL--ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
               E+   YH+L  + TQI+      +P G +RI  +   G++ +   + E +  YP++
Sbjct: 71  EHALEILTQYHRLVDDVTQIK-----TRPEGMIRIGCSFGFGRSHIAPAITELMRNYPEL 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+   L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S
Sbjct: 126 QVHFELFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQS 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           +QEL +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI
Sbjct: 185 LQELSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGI 241

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 242 MLRSEWDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|260429957|ref|ZP_05783932.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260418880|gb|EEX12135.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 312

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 5/245 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GSF  AA  L ++ +SI+R I+ LE ++G +L  R  R ++LT  G+ + 
Sbjct: 11  IRVFLSVVEQGSFAGAARSLRMTPASITRIIAQLEEDLGQQLLLRTTRQVSLTGAGAMVA 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  + +    E+  ++    G+L I   +  G  L+ G +  F L YP+I + + 
Sbjct: 71  ARYRPVLEEFDRVTEEITRTTRPDRGRLAINAPMSFGMRLMPGLVASFRLAYPNIALDVQ 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI  +  D AIR+  P    S I R++  +     AAP        P + +EL 
Sbjct: 131 LTDVLVDILDESCDLAIRISDPPGDKSTIWRRICHVPRQVVAAPALFDRIPRPETPEELP 190

Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               +++G       E + +   ++ R +            +L  M   V G+G+  LPD
Sbjct: 191 PAQCLSYGHG--GAAESWTFTRGSLRRTVRAGTDVVSNNGEFLHAM--AVSGNGMVNLPD 246

Query: 247 YIVKD 251
           ++V++
Sbjct: 247 FLVRE 251


>gi|260554158|ref|ZP_05826417.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260404700|gb|EEW98211.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 301

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 20/264 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+  A    ++ S++S+ IS LE  +GI+L  R  R   LT +G + 
Sbjct: 11  ELAIFIRVVELGSFSAVARACDMTPSAVSKLISRLEKRLGIRLLNRSTRQFQLTSEGCQF 70

Query: 67  HRVTSEVYHKLETTQIELQESSV---KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +    ++ + L+    EL++S     KP G++RI T+     + L   +  F   YP+I+
Sbjct: 71  YEQGLQILNNLD----ELEQSVTAHHKPQGRIRIHTSFSYWTHFLLPCISLFNQRYPEIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  L ++ I++     D AIR   P++SS+L+ R L + H +   +P Y++    P   
Sbjct: 127 LEAHLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTHKYYVCSPTYIEKYGCPKHP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            EL  H L+     +    ++  WL   AT +  +   R+  L+VN   +I+Q  V G G
Sbjct: 186 DELHAHRLLD----VSYQRQNKTWLFKKATQEINLTPSRV--LKVNQGEAILQLAVSGVG 239

Query: 241 IALLPDY---IVKDNPNLVRIMED 261
           IA L ++          L++I+ED
Sbjct: 240 IAQLNEFQIQKAIQQKQLIKILED 263


>gi|332529299|ref|ZP_08405261.1| transcriptional regulator [Hylemonella gracilis ATCC 19624]
 gi|332041216|gb|EGI77580.1| transcriptional regulator [Hylemonella gracilis ATCC 19624]
          Length = 308

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 136/300 (45%), Gaps = 29/300 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L+++  VA   SFT AA+ L L ++S+S+ +  LE  +G +L +R  R +  T+ G  
Sbjct: 5   EQLQIYTRVAELASFTQAADSLGLPKASVSQAVQQLEASLGTRLLHRTTRRVQTTQDGQV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  +L+  Q   +       G+LR+     + +  +   L EFL L+P+++++
Sbjct: 65  FYERCKELLAQLDDAQSLFRRGGEAVRGRLRVDMPSGVARQQVLPRLGEFLALHPELELE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC +R+   +  S+L+ R L  +     A+P YL     P ++++
Sbjct: 125 LSSTDRRVDLVREGFDCVLRIGT-LDDSALVARPLGYMVQLNCASPAYLAQHGTPQTLED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATV-DRPIGE-----------PRISCLQVNSYLSIMQ 233
           L KH L+             ++L T+  RP+G            P    L VN   +   
Sbjct: 184 LAKHRLV-------------HYLPTLGGRPVGWEYVEQGDVRNLPMAGALTVNDTAAYSA 230

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            C+ G G+   P    +   +   LV ++     P+  V   Y    +   + + F N++
Sbjct: 231 ACMAGLGLIQAPAIGTRPLIEQGLLVEVLPQWRAPAMPVSLVYANRRQLPRRTQVFMNWL 290


>gi|289807257|ref|ZP_06537886.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 196

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADLS 179

Query: 188 KHNLITF 194
            H+ + +
Sbjct: 180 SHSWLEY 186


>gi|115376998|ref|ZP_01464216.1| LysR-family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310824482|ref|YP_003956840.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365976|gb|EAU64993.1| LysR-family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397554|gb|ADO75013.1| transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 310

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 142/296 (47%), Gaps = 15/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L+ F    RSGSF+ AA     + S+ S++++ LE  +G++L  R A+GL LT +G 
Sbjct: 20  WPSLQSFVQSVRSGSFSAAARDAGTTPSAFSKKVARLEAHLGVRLLIRGAKGLELTPEGQ 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L +     +  +E   ++   ++ +P G +R++  +D G++ L   +  F   YP +++
Sbjct: 80  ELFQRVDRAFEDVEDACMQATRAT-EPRGLVRVSAAMDTGRDWLMPRIPRFARAYPHVEL 138

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+ +      L++R+L  +     A+P YL+    P   +
Sbjct: 139 EVSLSDRFVDLLAERFDVALRVGE-FDDGRLMRRRLGRMRRCFCASPAYLRARGVPRRYE 197

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL  H  + +   +     D   L +  R  P G         ++   + Q  + G G+A
Sbjct: 198 ELAGHVKLAY---LRGTQRDPWELPSGGRLHPQGP-----FASDNNAGLRQLTLAGLGVA 249

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP+  + ++     L  ++E    P   +   +P+      +++AF +F   +AR
Sbjct: 250 WLPELTIAEDVQRGALQVLLEHPPDPGMPISLAFPQGRLLAPRVRAFLDFFAEEAR 305


>gi|71734420|ref|YP_275148.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554973|gb|AAZ34184.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 298

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 8   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +K +L  YP   + L++
Sbjct: 68  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVKAYLQRYPGTSVDLLI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P S QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGHCDSVVCASPAYLAMHGTPASPQELAA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K + +F        P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 187 HNCLTY-SYFGKSLWEFT---RQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  L+ ++ D    +  ++  Y      +  L+   +F+
Sbjct: 243 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 287


>gi|90420070|ref|ZP_01227978.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335404|gb|EAS49154.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 296

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 128/289 (44%), Gaps = 17/289 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  +   GSFT AA  L L +S+ +     LET +G +L  R  R +  T  G  
Sbjct: 5   DRIRLFVRIVERGSFTSAASDLGLPRSTATEATKSLETYLGTRLLDRTTRHVAPTLDGES 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    +   L+  +   +    +P G LR+     L +  L   L EFL  YP I + 
Sbjct: 65  YYRRCITILADLDEAEGAFR--GAEPRGTLRVDAHSRLTRTFLLPGLPEFLNRYPLIDLH 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC IR   P + S LI R L TI     A+P YL+    P +  +
Sbjct: 123 LGQGDRLVDLVREGVDCVIRAGHP-EDSRLILRSLGTIEEITVASPTYLQRHGMPATPDD 181

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  H  + F     G ++P    +F     V RP+  P  S + V++  ++     LG G
Sbjct: 182 LHGHQTVGFVSSRTGGILPL---EFTMDGIV-RPVRLP--SRVIVSNSDAMADLARLGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +   P Y   D+     LV ++ D       +   YP+  +   +L+ F
Sbjct: 236 LVQAPRYRFADDLASGRLVEVLTDFPPSPTPLSALYPQNRQLAPRLRVF 284


>gi|167824453|ref|ZP_02455924.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
          Length = 301

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 138/302 (45%), Gaps = 14/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVVAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+  P+      W      P      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGEQ-PR----VEWRFDGSHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
              + V   P+L      R++ +  + +  ++  YP       +++ F +++ ++  R W
Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAW 296

Query: 298 KF 299
           ++
Sbjct: 297 RW 298


>gi|117625373|ref|YP_855415.1| transcriptional activator TtdR [Escherichia coli APEC O1]
 gi|331648861|ref|ZP_08349949.1| HTH-type transcriptional activator TtdR [Escherichia coli M605]
 gi|115514497|gb|ABJ02572.1| putative transcriptional regulator YgiP [Escherichia coli APEC O1]
 gi|331042608|gb|EGI14750.1| HTH-type transcriptional activator TtdR [Escherichia coli M605]
          Length = 328

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 29  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 88

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 89  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 148

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 149 LFDRQIDLVQDNIDLDIRINDAI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 207

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 208 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 264

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LVR++ +    S  ++  Y E L  + KL+    F+
Sbjct: 265 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 310


>gi|91783116|ref|YP_558322.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687070|gb|ABE30270.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 298

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 14/252 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+   +   GSF  AA  L + +SS+++ I  LE  +G +L  R  R +  T  G  
Sbjct: 5   DAMRLLVRIVERGSFAAAARDLDVPRSSVTQGIQELERRLGAQLLQRTTRQVRPTLDGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    +   +E  + E   +  KPSG +R+     L +  +   L  FL  YPDIQ+Q
Sbjct: 65  FYRRCLGIIADVE--EAEAAFNGAKPSGLVRVDVHGTLARYFMMPALPSFLDTYPDIQVQ 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D++ D  DC +R+ + +  SSL+ R++  +    +A+P YL     P    +
Sbjct: 123 ISEADRLVDLTRDGVDCVLRVGE-LPDSSLVGRRIAMLKQGTFASPEYLARHGVPQHPAQ 181

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+ H ++ +     G++IP       +L    R       S +   +  +I     LG G
Sbjct: 182 LEGHRMVGYLSQITGEIIP-----LEFLVAGKRQSMTLPASVMVTGAETNI-SAARLGLG 235

Query: 241 IALLPDYIVKDN 252
           +  +P Y V D+
Sbjct: 236 LVQVPRYRVADD 247


>gi|290511282|ref|ZP_06550651.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289776275|gb|EFD84274.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 299

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 134/294 (45%), Gaps = 14/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGTISAAARKLEITPPSVSNALKLLEEHIGHPLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+     LET+   L++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTAAAVEVLETSLESLRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  ++I  +  D  IR    ++   + +  +       YA+  YL     P    
Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILEGGVVARPLMKPFREGLYASSAYLAEYGVPAVPA 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L+ H LI +       ++P  + D     TV+ P        L  N    +      G 
Sbjct: 186 DLNHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHGL 239

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  L + I +  P+    + +MED       VY  YP+    T ++KA  +F+
Sbjct: 240 GIGRLFEPIWRLQPDREQFIPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFL 293


>gi|171318438|ref|ZP_02907593.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171096352|gb|EDT41254.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 301

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 139/296 (46%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE+++G++L +R  R  TLT+ G
Sbjct: 5   DLPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESQLGVRLLHRTTRQQTLTDDG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  + +      G L +    +LG+  +   +  F   +P++ 
Sbjct: 65  AQFHAQVLRILAEVERAETLMTDRRGTVGGLLCVTAPGELGRLRIAPLIAAFQRRHPELI 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P Y+     P   
Sbjct: 125 VQLMLTDAIVDLLAHDIDVAVRI-GSLADSTMIARELAPNHRVLCASPSYVAAHGLPAEP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I  GD  P+    F+    +   +     + L  N   +     + G+GIAL
Sbjct: 184 AELRAHRCIVLGDQ-PRAEWRFDGAQGM---VAVEVTAALLTNDGGAARTLALEGAGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              + V    D   LVR++     P+  ++  YP       +++AF +F+  + RD
Sbjct: 240 KSIWDVGADLDAGRLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVDFLREQLRD 295


>gi|170734025|ref|YP_001765972.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817267|gb|ACA91850.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 295

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 138/274 (50%), Gaps = 14/274 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R +  +E  +G +L  R  R L+LT+ G   H
Sbjct: 7   MRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAG---H 63

Query: 68  RVTSEVYHKL-ETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +++ H + E  ++E   +S+  +P G L+IA  +  G ++L   +  F + +P I  
Sbjct: 64  LYLAQIRHVIDEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  D  + L + I +++L++R L  +     AAP Y++    P   Q
Sbjct: 124 EVTIVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLRQLVCAAPQYVERHGTPAHPQ 183

Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  + F  D + + +  F+   T  R    P  S    N  L I  + + G GIA+
Sbjct: 184 DLASHACLAFHADFMGEYLS-FDHDQT--RITVRPNKSASSNNIGL-IRNWALSGMGIAV 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           LPD++VK   D+  L+ ++      +  +   YP
Sbjct: 240 LPDFLVKSDLDDGRLLALLPGYRLEALEMNVAYP 273


>gi|330965341|gb|EGH65601.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 305

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AA+ LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAADSLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP +++
Sbjct: 64  AYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFTRRYPQVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL ++
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQVTCASREYLQQHGTPLQLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H +I +            ++     P  +  ++C + VNS    +  C  G G+  
Sbjct: 183 DLAHHQVIEYFSASTSKRYGLEFVGEGGAP--DHGLACSISVNSADGYVAACEAGFGLIQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y +     +  LV ++     P   +   YP   + + +++ F +++
Sbjct: 241 VPRYHIAGQLRSGTLVEVLRRHRPPPLALKALYPPHRQLSRRVRVFVDWL 290


>gi|312960390|ref|ZP_07774899.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311285275|gb|EFQ63847.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 291

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 135/289 (46%), Gaps = 18/289 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  V R  +   AA  L + Q+++ R+I+ LE  +   LF R + G  LT  
Sbjct: 1   MNWDDARVFLAVCRESTLRGAARVLGVDQATVGRRINALEKSLSATLFLRTSEGYALTAV 60

Query: 63  G-SKLHRVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           G + LH V      K+E + ++L+        + +G +R++TT  L  + L   +     
Sbjct: 61  GEAALHSV-----EKMERSALDLERQIQGLDDRLTGTVRVSTTDSLAIDFLIPAIASLHG 115

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+++QL    + + ++   AD A+R  +P  +  LI R++    +  +AA  Y+   
Sbjct: 116 KHPDVRVQLDASTQILSLAKREADIAVRNTRP-DNPDLIARRIACWPVGLFAAQAYIDRH 174

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P      D H+L+ +       ++    L  V  P+G  RI    ++S L + +    
Sbjct: 175 GVPDPGSLFDGHDLVVY----QPYLQTHKDLTLVSEPLGRGRI-VTALSSSLLVRRSIAA 229

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKA 285
           G GI  +P Y   +   LVR+  + + P  + V+      L++T +++A
Sbjct: 230 GLGIGEIPVY-TGERDGLVRLWPERVRPLPYDVWLVTHADLRHTARVRA 277


>gi|187924251|ref|YP_001895893.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715445|gb|ACD16669.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 294

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 133/286 (46%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS T AAE+  +S + + + I  LET +  +L  R  R  +LTE G + +
Sbjct: 7   MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLETRLATRLLTRTTRRQSLTEIGRQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L++   +  G  +    + EFL  +PDI ++L 
Sbjct: 67  EQCRRILADVKGAESLAEAMAAAPRGVLKVTVPLTYGVEVFSPAMTEFLSAWPDITLELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ ID+  +  D ++R+ + +  SS + R L    M A A+P YL     P + ++L 
Sbjct: 127 LSNRIIDLVEEGFDASVRIGR-LPDSSFVARPLKPYRMRACASPAYLARAGTPRTPEDLM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F   +    E    L   +    + R    + N+  ++    + G G+ L P+ 
Sbjct: 186 HHECLGF---LHWGREGLWRLGGDNADECQLRAGRFRANNGQALKVAALHGFGLVLQPEA 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++     +  LV ++ED +     V+  YP   + T KL +F +F+
Sbjct: 243 LLAREIASGELVSVLEDYLPDGAPVHLLYPRDRRATPKLTSFIDFV 288


>gi|209550308|ref|YP_002282225.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536064|gb|ACI55999.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 299

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 9/282 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V + GS + AA +L L+Q +I R +  LET +G +LF R   GL  T+   
Sbjct: 7   WDFYRAFLTVLQQGSLSAAARELGLTQPTIGRHVDALETAIGAELFTRSPNGLLPTDAAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                + +G +R++ +  +   +L G        YP++QI
Sbjct: 67  ALKPYAETLAATTAALLRTASGERERVAGTVRVSASEVIAVEVLPGIFGPLQDAYPELQI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +   D+    AD A+R+ +P Q  +L+ R++  I +  +A   YL+    P ++ 
Sbjct: 127 ELSASDAIEDLVNREADIAVRMAEP-QQGALVVRRIGDIPLGFHAHRRYLERHGIPQTLA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243
           +L  H LI F            ++  V +    P I    + +S L+ +     G GI L
Sbjct: 186 DLADHRLIGFD-------RQTAYVRLVTKRYEVPGIDFSYRTDSNLAQLSAIRAGVGIGL 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
               + ++NP+LV ++ +        +    E+LK + + +A
Sbjct: 239 CQIGLARNNPDLVHLLPEAFKIPLATWVAMHESLKTSPRCRA 280


>gi|116251096|ref|YP_766934.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255744|emb|CAK06825.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 300

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 14/298 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G F+ AA +L++S + +   +  LE  +G++L  R  R ++LTE G   +
Sbjct: 7   LMVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTETGKYYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +S++  +L+         S  P G L++ T+  + + LL   + EF+ LYP I +   
Sbjct: 67  ERSSQILAELDEADRTAGALSTTPRGTLKVYTSSAIVRFLLP-VVSEFMELYPSISLDFS 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  + +D+  D  D  +R   P   SSL+ RKL         +P Y ++   P +  E+ 
Sbjct: 126 VGERMVDMIEDGYDLVMRTVPP-PDSSLVARKLTPWRHMLVCSPAYFQSHPMPKTPAEVA 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVL-GSGIALLP 245
            HN + +    P   E   W         E  +IS   V++   ++++  L G GI L P
Sbjct: 185 DHNCLQYA-YYPYGDE---WRFEDGEGNKESVKISGNVVSNSAEMLRFLTLTGRGIFLAP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
            ++V D+     LV+IM D     F +   YP       K++ F + +   F + R W
Sbjct: 241 SFVVFDDIAEGRLVKIMPDYRPVEFNINAVYPNRSHLPTKVRLFIDLLAERFAEHRKW 298


>gi|320325421|gb|EFW81486.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327438|gb|EFW83451.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330877344|gb|EGH11493.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 306

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +GSFT AA++L L+ S++S+ ++ LE+ +G++LF R  R L LTE+G+  H
Sbjct: 14  IETFVAVANAGSFTAAADRLSLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGAAYH 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V + +   LE  +  L     +P+G+LRI      G+      +  F   +  ++ ++ 
Sbjct: 74  AVCTRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRIT 133

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +DI  +  D A+R+  P +  + +  R L T  +   AAP YL+    P + ++L
Sbjct: 134 FTDRFVDILEEGIDLAVRIGGPAVWPAGVAHRYLGTERVIFCAAPAYLERHGIPTTFEDL 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
             H  I FG           WL   D+   E R   + L + +  + +       GIA L
Sbjct: 194 ASHACILFGR---GDGSTSPWLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGIAQL 250

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +++++      LV I+  + T    ++  +P   ++  K++A 
Sbjct: 251 ATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQAL 295


>gi|312170846|emb|CBX79106.1| Uncharacterized HTH-type transcriptional regulator yhjC [Erwinia
           amylovora ATCC BAA-2158]
          Length = 305

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 127/269 (47%), Gaps = 10/269 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA+Q+ LS S++S+ ++ LE E+ +KL  R  R L LTE G    
Sbjct: 7   MSVFTKVVELGSFTAAAKQMQLSVSAVSQIVARLENELQVKLLNRSTRNLGLTEAGKIYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  + +    +L   +  P G LRI ++  + QNLL    KE L  YP + + L+
Sbjct: 67  QGCRRMMAEAQQVHEQLWAFNNTPVGTLRIGSSSTMSQNLLAPMAKEILQEYPGLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +  D+  D  D AIR+   +  SSL  ++L ++ M   AA  YL     P    ++ 
Sbjct: 127 TGIRAPDLIADGLDLAIRV-GALPDSSLFAKRLGSMPMVVCAAKAYLLQFGTPEKPSDIS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +  + P    DF+ ++     I          N   +++++   G+GIA +P  
Sbjct: 186 NHSWLEY-SVRPD--NDFDLISPEGIAIRLSPQGRFATNDAQTLIRWLKAGTGIAYVPLM 242

Query: 248 IVKD--NPNLVRIM----EDVITPSFTVY 270
            + D  N   V I+    + V  P + +Y
Sbjct: 243 WIIDEINAGEVEILFAHYQSVPRPVYALY 271


>gi|317048749|ref|YP_004116397.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950366|gb|ADU69841.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 319

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 126/288 (43%), Gaps = 23/288 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VAR  SF+ A  +   + SSI RQI  LE  +   LF R  R LTLT+ G  L 
Sbjct: 23  LGVFVDVARESSFSAAGRRRGRTPSSIGRQIDALEAHLDTPLFLRSTRHLTLTDAGEALL 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L   Q EL     + +G LR+A     G+  +   + E    +PD++++L 
Sbjct: 83  IRARQILDSLVDVQQELASMKGEVTGILRVACYPTFGKRYVLPVMGELARQHPDLRLELD 142

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D   +  D  IR+   +  S+LI  ++        A+P YL     P S+ +L+
Sbjct: 143 LTERLADPVAERLDLVIRIGD-MADSTLIGSRIAMQTRVLCASPAYLAQQGMPASLTDLN 201

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGSG 240
            H LI      DL+  C     W A +  P       P   C   + +  +    V G G
Sbjct: 202 AHRLIDKLHGSDLL--C-----WSAVLGHPTRASNTAPVFGC---DDFEGMRLAAVEGLG 251

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           IA LPD++V ++     I   V+   F  +   P+A      L+A R+
Sbjct: 252 IAYLPDWVVGED-----IQAGVLQQIFPEWSAQPQATTGIYALRALRH 294


>gi|158425744|ref|YP_001527036.1| putative transcription regulator [Azorhizobium caulinodans ORS 571]
 gi|158332633|dbj|BAF90118.1| putative transcription regulator [Azorhizobium caulinodans ORS 571]
          Length = 295

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 118/262 (45%), Gaps = 16/262 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  VAR G    AA +L L  ++++R+++ LE E+G K+F R   G   T  
Sbjct: 1   MNWDHARVFLAVAREGQMLGAARKLGLDHATVTRRLNALEAELGAKVFERSPTGCAPTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L  +   V  ++   Q  L  + +  SG +RI      G   L   L  F  L+PD+
Sbjct: 61  GEQLLAIAERVESEMVKAQSLLGNADLTLSGTVRIGAPDGFGTYFLAARLAAFATLHPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD A+ L +P ++  L+ RKL    +  YAA  +L       +
Sbjct: 121 VIQLVPLPRTFSLSRREADIAVVLDRP-RTGRLVGRKLTGYSLSLYAARAHLDRFGPIET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYCVL 237
            ++L     +T+       ++D  +   +D       +   R  C  V      M+    
Sbjct: 180 PEDLKDRMAVTY-------VQDLTYSPGLDYMEALTGLCARRFECASVAGQ---MEAVRA 229

Query: 238 GSGIALLPDYIVKDNPNLVRIM 259
           G GI +L DY    + +LV ++
Sbjct: 230 GVGIGILHDYAAAPDADLVPVL 251


>gi|15891140|ref|NP_356812.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15159488|gb|AAK89597.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 297

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 137/295 (46%), Gaps = 20/295 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR F  VA +G  + AA +L +S+S +SR++  +E E+G++L  R  RG  LTE 
Sbjct: 1   MDIEDLRTFVAVADAGGVSAAARRLGISKSIVSRRLFRIEAELGVQLLARTTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118
           G     +T   +    + +I+    ++ P+    G+LRIA  +  G       L E    
Sbjct: 61  G-----ITFRDHAARASAEIDTARETILPAGELHGRLRIAMPLTFGPTHFAPVLAEMARQ 115

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P + I     ++ +D+  +  DCAIR    +Q S+LI +++  IH    A+P Y+K   
Sbjct: 116 HPQLHIHTSYSDRFVDLIAEGFDCAIRGAY-LQDSNLIAKRVGPIHGKLVASPAYIKAHG 174

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P  +++L  H  +  G    + M D + + TV +P G+      + +S  ++      G
Sbjct: 175 SPEMVEQLVNHQALMQGTEAWQFM-DGDRIVTV-QPQGK-----FKADSATALAAAAAAG 227

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA LPD I      +  LV IM     P   VY   P +     K++     +
Sbjct: 228 LGIAWLPDCITHAYLASGALVPIMTRYPVPPGAVYVVRPPSQHPARKVRVLTEML 282


>gi|71734272|ref|YP_273747.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554825|gb|AAZ34036.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 302

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +GSFT AA++L L+ S++S+ ++ LE+ +G++LF R  R L LTE+G+  H
Sbjct: 10  IETFVAVANAGSFTAAADRLSLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGAAYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V + +   LE  +  L     +P+G+LRI      G+      +  F   +  ++ ++ 
Sbjct: 70  AVCTRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRIT 129

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +DI  +  D A+R+  P +  + +  R L T  +   AAP YL+    P + ++L
Sbjct: 130 FTDRFVDILEEGIDLAVRIGGPAVWPAGVAHRYLGTERVIFCAAPAYLERHGIPTTFEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
             H  I FG           WL   D+   E R   + L + +  + +       GIA L
Sbjct: 190 ASHACILFGR---GDGSTSPWLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGIAQL 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +++++      LV I+  + T    ++  +P   ++  K++A 
Sbjct: 247 ATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQAL 291


>gi|16128867|ref|NP_415420.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107750|ref|AP_001530.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160423|ref|YP_001457741.1| LysR family transcriptional regulator [Escherichia coli HS]
 gi|170020698|ref|YP_001725652.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739]
 gi|170080558|ref|YP_001729878.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|194438712|ref|ZP_03070799.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|238900158|ref|YP_002925954.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|253774071|ref|YP_003036902.1| LysR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161014|ref|YP_003044122.1| putative DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|256023399|ref|ZP_05437264.1| predicted DNA-binding transcriptional regulator [Escherichia sp.
           4_1_40B]
 gi|300929593|ref|ZP_07145056.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300949740|ref|ZP_07163717.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300955454|ref|ZP_07167827.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|301024419|ref|ZP_07188104.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|312971028|ref|ZP_07785207.1| uncharacterized HTH-type transcriptional regulator ycaN
           [Escherichia coli 1827-70]
 gi|2495398|sp|P75836|YCAN_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator
           ycaN
 gi|1787128|gb|AAC73986.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4062476|dbj|BAA35635.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|157066103|gb|ABV05358.1| transcriptional regulator, LysR family [Escherichia coli HS]
 gi|169755626|gb|ACA78325.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|169888393|gb|ACB02100.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|194422344|gb|EDX38344.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|238862261|gb|ACR64259.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|242376715|emb|CAQ31428.1| putative transcriptional regulator LYSR-type [Escherichia coli
           BL21(DE3)]
 gi|253325115|gb|ACT29717.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972915|gb|ACT38586.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253977129|gb|ACT42799.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|260449954|gb|ACX40376.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|299880391|gb|EFI88602.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|300317646|gb|EFJ67430.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300450854|gb|EFK14474.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300462481|gb|EFK25974.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|309701176|emb|CBJ00476.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           ETEC H10407]
 gi|310336789|gb|EFQ01956.1| uncharacterized HTH-type transcriptional regulator ycaN
           [Escherichia coli 1827-70]
 gi|315135548|dbj|BAJ42707.1| putative DNA-binding transcriptional regulator [Escherichia coli
           DH1]
 gi|323938006|gb|EGB34268.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1520]
 gi|323942816|gb|EGB38981.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|323962892|gb|EGB58466.1| LysR substrate binding domain-containing protein [Escherichia coli
           H489]
 gi|323973227|gb|EGB68419.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
 gi|332342343|gb|AEE55677.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 302

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMSLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +         A P Y 
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SCIVEKDMISVAIGPPVKLCVAATPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               +P    +L  H  + F    P   + F+W    +  I       + ++   + ++ 
Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289
            ++G+GI  L    +K   D   L  ++ED  T  P F +Y  YP     +  L+AF ++
Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287

Query: 290 I 290
           +
Sbjct: 288 V 288


>gi|313498251|gb|ADR59617.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 294

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 142/295 (48%), Gaps = 12/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  +GSFT AA++L +S+ S+SR++  LE  +G++L  R  R L  T  G 
Sbjct: 4   YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++  + ++   +    G LR++  +      L   L EFL L+P + +
Sbjct: 64  HYYQSALRLLGEVQQVEHDISGQAQVLRGTLRLSAPLSFAMAHLGCLLTEFLQLHPQVDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++ ++     A+P YL+    P    
Sbjct: 124 EVDLSDRAVDLIGEGYDLALRI-GALEDSSLIARRIASVERVYCASPAYLQARGVPGKPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL  H+ + +G           W           +++  ++ N+   +    + G G+  
Sbjct: 183 ELAAHDCLPYGH-----SRQVQWQFHKGGKTQAIQVTGRMRANNGELLRGAAIAGMGVTY 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP +IV        LV ++++    +  +   YP+  +    ++ F +  FL+AR
Sbjct: 238 LPTFIVGQALAEGQLVTVLDEWRPSALQLSAVYPQHRQVARPVQGFVS--FLRAR 290


>gi|262278736|ref|ZP_06056521.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259087|gb|EEY77820.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 296

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 130/274 (47%), Gaps = 8/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR GSFT AA ++ +SQS++S  I GLE  +G+ L  R  R ++ T  G
Sbjct: 6   NYNDLYAFLMVAREGSFTKAAGKMGISQSALSHTIRGLEERLGMLLLTRTTRSVSPTAAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  S  + +++     L     +P+G +RI  +    + +L   L++    YPD+Q
Sbjct: 66  ERLKQTISASFDQIDNELSLLTSFRDQPAGTVRINASSHAIREVLIPKLEKIAGDYPDVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI  +  D  +R    +    +  R    + M   A P Y +    P + 
Sbjct: 126 VELAANSGMVDIVAERFDAGVRFGSRVADGMIAVRISADVKMAVIATPEYFEKYGIPATP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
           ++L  H  I +       +  + W    D    + +I    + N    I++    G G+A
Sbjct: 186 KDLINHQCIGYRLTTQGSI--YAWEFMKDGQETKIKIQGQWIFNESYDIVEAVRAGFGLA 243

Query: 243 LLPDYIVK---DNPNLVRIMED--VITPSFTVYF 271
            +P  +++   D   LV+++++  +  P + +Y+
Sbjct: 244 YIPQELIQQDLDQGKLVQVLDEYSIQFPGYHLYY 277


>gi|183596306|ref|ZP_02958334.1| hypothetical protein PROSTU_00041 [Providencia stuartii ATCC 25827]
 gi|188023910|gb|EDU61950.1| hypothetical protein PROSTU_00041 [Providencia stuartii ATCC 25827]
          Length = 306

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 145/304 (47%), Gaps = 25/304 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +   GS + AA++L +S++ ++R ++ +E   G++L  R  R L+LT  G  ++
Sbjct: 7   VQVFISIVEHGSMSAAADKLDMSRAMVTRYLAEMEQWAGVRLLNRTTRRLSLTSAGEGVY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++     T  ++ Q  + + +G +RI+    +    L   + EFL  YP++ I L 
Sbjct: 67  QQALKLNALSLTLPVQQQHDATQLTGLVRISCAQSIASQALSVAITEFLQHYPNMAIDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + NK +++  D  D AIR+   ++  SLI + L T H    AAP + K+ + P+  ++L 
Sbjct: 127 ITNKAVNLIEDRIDLAIRITNQLE-PSLIAKPLSTCHSVICAAPSFFKDKKIPIKPEDLA 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSG 240
               +T   FG  + +  +D           GEP        L  +  + + Q  + G+G
Sbjct: 186 PLECLTYNFFGRSLWRFEKD-----------GEPFSVLVGGRLSADESVFLAQAALNGAG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           IA+ P   VK   ++  L++++ D +     +Y  Y         L+A  +F+   F  +
Sbjct: 235 IAMQPYLSVKKYLESGELLQLLPDYVPQPLGIYAVYASRQNMPTTLRAVLDFLGNWFTTS 294

Query: 295 RDWK 298
             W+
Sbjct: 295 EYWQ 298


>gi|114569714|ref|YP_756394.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114340176|gb|ABI65456.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 302

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 133/296 (44%), Gaps = 18/296 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW    V   V+ +GS T AA +L +SQ +++R++  LE+  G  LF R      LT  G
Sbjct: 3   DWSDYLVCLAVSEAGSLTAAAHELGVSQPTVTRRLQALESRFGEPLFEREQGQTRLTPLG 62

Query: 64  SKLHRVTSEVYHKLETTQIE----LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            K+         + E + IE     Q+ S+  SG + ++ +  LG + L   L+ F    
Sbjct: 63  RKV--TAHAARMRDEASAIERAAMAQDQSL--SGLVVVSASEGLGADWLPLALESFQAAN 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I I + + N   +++   AD A+R   P    SL+ R+  T+    YAA  YL     
Sbjct: 119 PGIGIDIAIKNNSANLADREADIALRWNGPGTQQSLVGRRGATVGAGLYAAKSYLDKHGR 178

Query: 180 PLSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           P ++++L  H  +  + GD        F W +T       PR    + NS  S ++    
Sbjct: 179 PNAVEDLADHAGVGWSIGDY-------FGWPSTQTGAPVLPRHVSFKSNSPASHVKGLEA 231

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G G+ +    + +++  L RI+ D    S  ++    E ++ + +++A  + I  +
Sbjct: 232 GFGVGVTSHRLARNSIYLERILPD-FESSLDLWVVAHETVRKSARVRAAYDHIIAQ 286


>gi|152987996|ref|YP_001346595.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963154|gb|ABR85179.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 317

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT A++QL+ + + +SR ++ LET +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTEAGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   Y D+   L
Sbjct: 66  LLRCEQILAYVEEAEAEASDAHARPAGRLKLHSMTGIGQHYVIRAIAGYRQQYRDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+  D+  +  D AI +   +  S  I +++   +    A+P YL+    P    EL
Sbjct: 126 TMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRRNGTPSEPAEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             H+ +    L+   +    WL   D P G+  +S      QVN   ++ +    G GI 
Sbjct: 186 ANHDCLR---LVSPVVPLDRWL--FDGPNGQEMVSIGASPFQVNVGDAMTEAIRSGLGIG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y   D+     LVR++         VY  YP       K+K +  ++
Sbjct: 241 ILPVYSAIDDLGKGTLVRVLPQHRLQQLNVYALYPSRQYLDAKIKTWVEYL 291


>gi|311104771|ref|YP_003977624.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310759460|gb|ADP14909.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           49 [Achromobacter xylosoxidans A8]
          Length = 306

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 133/296 (44%), Gaps = 21/296 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            DWD LR F  VAR+   + AA +L +  +++SR+I  LE E+   LF +  + G  LTE
Sbjct: 2   LDWDSLRYFLEVARTQRVSAAARKLGVEHTTVSRRIRALEAELDTLLFEKSRSAGFVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   + + +  L       SG LRI  T   G  +L     +F   YP 
Sbjct: 62  DGQRLFVHAEQMESTVHSARENLSGIGQALSGHLRIGATEGFGSYVLTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    +  KL    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCSKLCDYTLRLYGTPGYLARHPPIR 180

Query: 182 SIQELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              +L +H+ I + D +      + +ED    + V           L+  S ++     +
Sbjct: 181 ERADLAEHSFIGYVDELLFSERLRYLEDLLPASKV----------VLRSTSVVAQYHAAL 230

Query: 237 LGSGIALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G  +A+LP +I   +P L  ++ D   IT SF +Y C+ E L+   ++ A  +FI
Sbjct: 231 QGQSLAILPCFIAAQDPRLTPVLADEVEITRSFWMY-CH-EDLRKLKRVTALWDFI 284


>gi|148654094|ref|YP_001281187.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148573178|gb|ABQ95237.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1]
          Length = 304

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 133/276 (48%), Gaps = 12/276 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  +  SGS T A+EQL +++S++SR++  LET +  +L  R  R  T+TE G K
Sbjct: 5   EDMALFVRIVESGSITKASEQLDIAKSAVSRRLKELETSLNTQLISRTTRRSTVTEAGQK 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  ++E    ++   + +  G +R+   +  G   L   +  +   +P +  +
Sbjct: 65  YYQQACSILSEIEVLNEQISGVASQIEGTMRMTAPLSFGLMHLNDIIHNYAQQHPQLNFE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  + AIR+ + ++ SS   ++L  I     A+P Y+     P +I +
Sbjct: 125 LDFSDRHIDLVEEGYEMAIRIGE-LKDSSYQAKRLTVIRRVLCASPDYIARAGMPQTIAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L +H  + +G L  K  E    +  +D      +I   S ++ N+   ++   + G GIA
Sbjct: 184 LKQHAFLQYG-LQSKQGE----IDLIDASGQHHKIETQSRIKANNGNFLLDMAIKGYGIA 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            +P +I   +     L+ +M D   P+   Y  YPE
Sbjct: 239 YMPTFIAYQSLAEGKLIPVMADFELPTLNAYAVYPE 274


>gi|307726242|ref|YP_003909455.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586767|gb|ADN60164.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 283

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 11/256 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  +R+F  +AR+G+   AA  L LS  +I R++  LE  +G  LF R A G  LTE+
Sbjct: 1   MEWSDVRIFLAIARTGTLGAAARTLQLSHPTIGRRLRALEASMGQVLFQRTADGFVLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS +  +   +       +  L     K  G L++++    G  +L   + E+   YP +
Sbjct: 61  GSVIVPLAEHMEESALAMERRLTGEQQKLEGTLKVSSADWFGAYVLPPVIAEYAREYPFV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++++   +   ++   AD A R+  P     ++QR+L  +    Y A  +        S
Sbjct: 121 QMEILTGTRLFSLAQREADVAFRI-VPFDGPDIVQRRLTQMRYGVYVAASHPDPAEGDGS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H LI   D       D +WL       G      LQ N+     Q C  G GIA
Sbjct: 180 -----GHRLIAM-DTSTGAFPDIDWLKNRFPNAG----VVLQSNNRNVQAQMCGRGLGIA 229

Query: 243 LLPDYIVKDNPNLVRI 258
           +LP  +    P + R+
Sbjct: 230 VLPRPVGDQLPTVRRL 245


>gi|254524649|ref|ZP_05136704.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219722240|gb|EED40765.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 305

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 2/189 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  +G F+ AA  L ++ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFVRVIETGGFSAAARTLDMTPSAVSKLVARLEQRLGTRLLQRSTRQLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V   L+  +     +  +P G+LR+ + +  GQ+ L   L  FL   P + + L
Sbjct: 71  YERGLRVLADLDEAE-RCASAHAEPRGRLRVNSNVPFGQHFLLPLLPAFLERNPQVGVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ ID+     D A+R   P++SSSL+ R+L    M   AAP Y +    P S++EL
Sbjct: 130 TLNDEVIDLLEQRTDVAVRA-GPLKSSSLVARRLGATRMMIVAAPTYAQRHGLPASVEEL 188

Query: 187 DKHNLITFG 195
             HN +  G
Sbjct: 189 QAHNRLDIG 197


>gi|218695361|ref|YP_002403028.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|218352093|emb|CAU97830.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
          Length = 307

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 144/305 (47%), Gaps = 41/305 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++           
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIA---------- 176

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATV-----DRPIGEPRIS------CLQVNSYLS---- 230
             +H        +PK + D + L  +     D P G  ++        ++V   LS    
Sbjct: 177 --QHG-------VPKHLTDLSALPCLVIKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHG 227

Query: 231 --IMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
             + Q+C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++ 
Sbjct: 228 EIVHQWCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRI 286

Query: 286 FRNFI 290
              F+
Sbjct: 287 TVEFL 291


>gi|126444368|ref|YP_001063303.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126223859|gb|ABN87364.1| transcriptional regulator [Burkholderia pseudomallei 668]
          Length = 312

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 11  DRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + E    + +       G LR+ +T++    ++   L EF   +P ++++
Sbjct: 71  FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFTSAHPALRVR 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178
           L       D+  D  D AIRL +  Q   L  R +   T  +   A+P     H +    
Sbjct: 131 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 190

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++  L +        +    + D +    V RP  +P +     +   +  Q    G
Sbjct: 191 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 247

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290
            G+ALLP+++V+D+     +++ +    F    VY  YP A     K++A+ +FI
Sbjct: 248 GGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 302


>gi|78060521|ref|YP_367096.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965071|gb|ABB06452.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 330

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 126/247 (51%), Gaps = 18/247 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F   AR  SFT A ++L+++QS++SRQ+  LE ++ I+LF+RH R LTLT++G +
Sbjct: 17  DFLRGFECAARHLSFTRAGQELNVTQSAVSRQVKALEEQLRIELFHRHIRSLTLTDKGRE 76

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   S     LE+   +L  S  + +  + ++TT+      L   L  F   YPDI ++
Sbjct: 77  LYDAISFALSDLESVIGKLSSSVGQRA--ISLSTTVSFAALWLIPRLGSFRASYPDIDVR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  D+       A+R   P  S+     L + ++V +      +P  +    +  
Sbjct: 135 VSATSEIEDLKRKRLHLAVRYAGPYTSTDETDVLFRERVVAV-----CSPSLMSAAGDAA 189

Query: 182 SI--QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236
           S+  ++LDKH L+   D  P+    ++  + + + +G PR+     L  + Y  ++Q  V
Sbjct: 190 SMKPEDLDKHVLLHLDD--PRGEWPWHGWSHLLKELGVPRLRPAGALHFSQYDQLVQAAV 247

Query: 237 LGSGIAL 243
            G GIA+
Sbjct: 248 DGHGIAI 254


>gi|312884531|ref|ZP_07744235.1| transcriptional Regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367843|gb|EFP95391.1| transcriptional Regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 293

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 128/268 (47%), Gaps = 13/268 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA +G F+ AA+QL  S S +SRQIS LE  +G  L  R  R ++LT+ G   ++  
Sbjct: 10  FAAVAETGGFSAAAKQLGCSTSHVSRQISRLEERLGSTLLTRSTRLVSLTDSGIVYYQQV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E+   LE     +  +    SG ++++      +  L   L EF  LYP+I +++ L++
Sbjct: 70  KELIVGLEQANDTINATQQHLSGNIKVSAAGGFVEYYLAPALMEFSALYPNITVEIDLNS 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + I+++ +  D AIR  + +  S+LI +KL++  + A A+  YL+    P     L  H+
Sbjct: 130 RLINLNEEGVDFAIRYGE-VSDSNLIAKKLISRPLMAVASQSYLEKNGTPKHPAHLKDHD 188

Query: 191 -LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            L+   +     ++      TV+R          + N+   I++ C+ G GIA +P    
Sbjct: 189 CLVANKETWEFIVDGKKEFITVNRR--------WKSNNANIILEACIRGLGIAYMPKSTF 240

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYP 274
           +   +N  +  I+E         +  YP
Sbjct: 241 EQALENKQVQPILEPFWGEGTNSWIVYP 268


>gi|197295074|ref|YP_002153615.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195944553|emb|CAR57157.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 330

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 126/247 (51%), Gaps = 18/247 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F   AR  SFT A ++L+++QS++SRQ+  LE ++ I+LF+RH R LTLT++G +
Sbjct: 17  DFLRGFECAARHLSFTRAGQELNVTQSAVSRQVKALEEQLRIELFHRHIRSLTLTDKGRE 76

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   S     LE+   +L  S  + +  + ++TT+      L   L  F   YPDI ++
Sbjct: 77  LYDAISFALSDLESVVGKLSSSVGQRA--ISLSTTVSFAALWLIPRLGSFRASYPDIDVR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  D+       A+R   P  S+     L + ++V +      +P  L    +  
Sbjct: 135 VSATSEIEDLKRKRLHLAVRYAGPYTSTDDTDVLFRERVVAV-----CSPSLLTAMGDAA 189

Query: 182 SIQ--ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCV 236
           S++  +LDKH L+   D  P+    ++  + + + +G PR+     L  + Y  ++Q  V
Sbjct: 190 SMKPADLDKHVLLHLDD--PRGEWPWHGWSHLLKELGVPRLRPAGALHFSQYDQLVQAAV 247

Query: 237 LGSGIAL 243
            G GIA+
Sbjct: 248 DGHGIAI 254


>gi|170702369|ref|ZP_02893261.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|172061162|ref|YP_001808814.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|170132728|gb|EDT01164.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|171993679|gb|ACB64598.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 325

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L     P
Sbjct: 125 VKVHIRVTNRVIDLFEDSVDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L   +L +   +    +  + +  FN +A    P G       +PR   L     ++I +
Sbjct: 185 LVPDDLARFETLDTPSVDGRHV--FNLIA----PDGTRHLHEHDPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292


>gi|296186344|ref|ZP_06854748.1| LysR substrate binding domain protein [Clostridium carboxidivorans
           P7]
 gi|296049145|gb|EFG88575.1| LysR substrate binding domain protein [Clostridium carboxidivorans
           P7]
          Length = 286

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 18/294 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L+ F  +AR G+ T+A+++LH++Q  +S Q+  LE E+GIKL  R  R   LT+ 
Sbjct: 1   MDIKQLKYFLTIAREGTLTNASKKLHIAQPPLSYQLKMLENEIGIKLIERTTRKSQLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+  + ++   +ETT  EL++ +    G L I  TI    ++L   + +F  LYP +
Sbjct: 61  GKFLYNRSEKIVELVETTLKELKDFNKGIEGTLAIG-TIASTASILPEKINDFHKLYPKV 119

Query: 123 QIQLILDN--KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-RE 179
             Q+   N  + +D+  +       +R P  S +L  + L   HM A    ++L +  ++
Sbjct: 120 NFQIREGNSTRILDLLNNGIIQIGIIRCPFDSKNLKYKSLSKEHMLAAIHSNFLSSTKKK 179

Query: 180 PLSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            +S+ EL    LI    F  +I       N+          P I C + +   S++ +  
Sbjct: 180 KISLIELKNLPLIIHVRFKSMIVDACSGLNF---------TPNIFC-ETDDVRSMLTWAT 229

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GIA++P   V   PN+    +++  P+  V   +   L N+      +NF+
Sbjct: 230 TGMGIAIVPKSTVNLIPNINLTYKEITNPNL-VTETFLVWLNNSYMSNTMKNFL 282


>gi|288549493|ref|ZP_06390697.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318185|gb|EFC57123.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 363

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 128/286 (44%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +  +GS + AA QL  +Q+++SR++  LET +G++L  R      LT+ G + +
Sbjct: 66  MRTFVRIVEAGSLSAAARQLSTTQATVSRRLQSLETLLGVRLLVRTTHTTRLTDDGERCY 125

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V       + E+ ++  +P G LR+      GQ+ L   L  FL  YP + ++ +
Sbjct: 126 QHARRVIDSWLALEDEVGQNEDEPVGVLRVRAPHAFGQDQLLKPLTTFLQRYPQLSVEWL 185

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K +D   D  DCAIR+   +  ++ +   L  +     AAP  L       S  +L 
Sbjct: 186 LNDKSVDFLGDNLDCAIRVGAEVDPAT-VSVLLAEVPRCVVAAPSLLAQFPPVSSPDDLQ 244

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +       + +E ++     DRP        L  +S        + G G+A++  +
Sbjct: 245 HLPWVAISTFYQRHVELYD--GKSDRPARIAITPRLSTDSLYVARNTALTGLGVAVVSSW 302

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+++     LV ++ +    +  V+  YP +     +L+ F   I
Sbjct: 303 TVQEDIREGRLVHLLPEWQPAALPVHLVYPWSRYYPARLRRFLEMI 348


>gi|148825902|ref|YP_001290655.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae
           PittEE]
 gi|148716062|gb|ABQ98272.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae
           PittEE]
          Length = 305

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 136/289 (47%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  +  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKIIETQSFTLAAKQQNISVAMASKLVSQLEEYLKTRLLQRTTRKIMPTEAGMM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     + + +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLEANGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GIA L
Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I+    +   L+ ++ +       ++  YP       K++AF  F+
Sbjct: 240 PKFILGSAFEKGELIELLPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|167625800|ref|YP_001676094.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167355822|gb|ABZ78435.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 304

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F  VA  GS T AA +L +S +  S  +  LE E+G  LF R  R L LT+ G +
Sbjct: 4   NDLRLFVRVADCGSLTSAAVELDISSAVASAGLKRLEKELGTTLFIRSTRSLRLTDAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      LE  Q  ++ +    SG + ++   D+G+N+L   L  FLL YP+++++
Sbjct: 64  YLIHCRRALSDLEVGQRAIESTQASISGLVSLSVPSDVGRNVLLPWLDAFLLEYPELKLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +   D   D  D A+R  KP + S+L+  K+        A+P Y+K   E  S+++
Sbjct: 124 LHIGDNLSDFYRDKIDVALRSGKP-KDSALVAFKICNSRRVLCASPDYIKRFGEVSSLEQ 182

Query: 186 LDKHNLITF 194
           L +HN + F
Sbjct: 183 LSQHNCLFF 191


>gi|260900096|ref|ZP_05908491.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308110146|gb|EFO47686.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
          Length = 318

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 127/291 (43%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R + LTE G +  
Sbjct: 7   LRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTEAGRRYA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +L   +  L+  +   SG L+I   +  G+  ++  LKEF   YP I I + 
Sbjct: 67  NTARFVLDELTACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPSITIDIH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+  +DI     D +IR    +Q S LI R+L  I      +  YL     P      +
Sbjct: 127 YDDAYVDIIEQGIDVSIR-SGVVQDSQLIVRQLSPIDFIICGSQDYLTRHGVPSGPDAFN 185

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+ + F     G L+P  M + +  +  +     P  + + VN   S+ + C  G G+ 
Sbjct: 186 DHSWVRFRFKQTGKLLPIRMPEPDGASEYN-----PERNFI-VNDGESMAELCAEGLGLT 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P +I +D      LV I   +      VY  Y        +++ F +FI
Sbjct: 240 QIPHFIARDWLKAGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFI 290


>gi|255525788|ref|ZP_05392718.1| transcriptional regulator, LysR family [Clostridium carboxidivorans
           P7]
 gi|255510521|gb|EET86831.1| transcriptional regulator, LysR family [Clostridium carboxidivorans
           P7]
          Length = 308

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 18/294 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L+ F  +AR G+ T+A+++LH++Q  +S Q+  LE E+GIKL  R  R   LT+ 
Sbjct: 1   MDIKQLKYFLTIAREGTLTNASKKLHIAQPPLSYQLKMLENEIGIKLIERTTRKSQLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+  + ++   +ETT  EL++ +    G L I  TI    ++L   + +F  LYP +
Sbjct: 61  GKFLYNRSEKIVELVETTLKELKDFNKGIEGTLAIG-TIASTASILPEKINDFHKLYPKV 119

Query: 123 QIQLILDN--KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-RE 179
             Q+   N  + +D+  +       +R P  S +L  + L   HM A    ++L +  ++
Sbjct: 120 NFQIREGNSTRILDLLNNGIIQIGIIRCPFDSKNLKYKSLSKEHMLAAIHSNFLSSTKKK 179

Query: 180 PLSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            +S+ EL    LI    F  +I       N+          P I C + +   S++ +  
Sbjct: 180 KISLIELKNLPLIIHVRFKSMIVDACSGLNF---------TPNIFC-ETDDVRSMLTWAT 229

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GIA++P   V   PN+    +++  P+  V   +   L N+      +NF+
Sbjct: 230 TGMGIAIVPKSTVNLIPNINLTYKEITNPNL-VTETFLVWLNNSYMSNTMKNFL 282


>gi|171056998|ref|YP_001789347.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774443|gb|ACB32582.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 322

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 24/296 (8%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GS + AA++L   +S++SR+++ LE   G +L  R  R LTLTE G  +   
Sbjct: 2   LFSRVIDAGSLSAAAKRLEWPKSTVSRRLAALERHFGERLVQRSTRKLTLTEFGQGVLEH 61

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V  +++  Q        +PSG+LR++   D+   +L   L EF+  +P I +++ L 
Sbjct: 62  ARQVAAEVDDAQALAAHRQQRPSGRLRVSMPGDVATQVLGDILSEFMAAHPAIALEMDLS 121

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQEL 186
            + +D+  +  D A+R+ +    + L  R+L       Y AP YL        P  +   
Sbjct: 122 PRRVDLIAENFDLAVRMGELQDEALLSARRLAAFTAGLYVAPSYLARHGPIVHPTDLARA 181

Query: 187 D-KHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           D    L   GD  P    +   D +W        G P ++    NS   ++Q    G G+
Sbjct: 182 DGLLLLGRGGDARPWQLHESAGDGHW-------TGLP-VTRATANSPELLIQLARAGRGV 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             + D           LVR++ D   PS T +  +PE      +L   R  +F+ A
Sbjct: 234 TAVSDLYAAPAVRTGALVRVLPDWCLPSVTAWAVFPER-----RLMPARTRVFIDA 284


>gi|209546774|ref|YP_002278692.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538018|gb|ACI57952.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 296

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 1/177 (0%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS+T AA  L +S S+IS+ +  LE  +G+ LF R  R LTLT +G +LH  T  +    
Sbjct: 19  GSYTAAARSLSISPSAISKSVQRLEQNLGVALFTRTTRSLTLTNEGRELHERTLRLLRDA 78

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E  +   + +   PSG LRIAT++ +G +++   L EF  LYP + I L L ++ +D+  
Sbjct: 79  EEIEQVAKAARAAPSGNLRIATSLPIGLHVIAPALAEFRRLYPTVTIDLRLSDQMVDLIE 138

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF 194
           +  D A+R+ + +  S L+ R+L    +  YA+P YL     P    EL++H  +  
Sbjct: 139 EGIDLAVRIGE-LSDSRLLSRRLSPHRLCCYASPEYLAKRSIPKHPNELEEHETVNM 194


>gi|167582125|ref|ZP_02374999.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 301

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE  +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   YP + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGRLRIAPIVAAFRQQYPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGAPERP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+  P+      W     +P+     + L  N   +     + G+GIAL
Sbjct: 184 ADLLAHRCIVMGEQ-PR----VEWRFDGPQPVAVEVSAALLTNDGGAARALALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V  +     L R++ +  + +  ++  YP       +++ F +++ ++ R
Sbjct: 239 KSIWDVGPDIAAGRLRRVLPEFASSAAPLHAVYPSGRHLALRVRTFVDYLGVELR 293


>gi|282890944|ref|ZP_06299458.1| hypothetical protein pah_c032o023 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499159|gb|EFB41464.1| hypothetical protein pah_c032o023 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 301

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 12/291 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  +  + SF  AA++L +S +++S+Q+  LE  +G++L +R  R L L+E G 
Sbjct: 4   FDQILYFMAIVEANSFAKAAKKLSISTAAVSKQMHLLEKHLGVELIHRTTRRLELSESGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++ H++E  +  +     +P G L + +     Q+ +   L EF+  YP + +
Sbjct: 64  LYFEHCKKIVHEMEEAERLISNVRAEPRGNLFVVSGRHFAQHYILPFLCEFVQAYPQVCL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L  +  D+  +  D  I    P    + +QRK+ T      A+P+YL     PL   
Sbjct: 124 NLELAERIPDLYQEKIDLVIGYSIPGPELA-VQRKIATTTYVLCASPNYLHKYGTPLKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  IT     P     FN  + +   P+       L++N   ++ Q  + G GI  
Sbjct: 183 DLTNHIYITHSMRKPDDKLSFNDGSEIHLNPM-------LKLNDSNALAQCAIAGLGIIK 235

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  YIV    +  +LV I+     P   +Y  Y E+     K++ F +F+ 
Sbjct: 236 IHHYIVAEALEKGSLVEILASYKEPKTPIYLYYQESRHLQPKIRYFIDFVL 286


>gi|167571988|ref|ZP_02364862.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 317

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 119/262 (45%), Gaps = 18/262 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA+ LHL+QS+IS+QI  LE  +G  LF R +RGL LT +G  LH
Sbjct: 13  LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRQSRGLALTPKGGVLH 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+  +  L  T  +L      P  +L+++         L   L +F  L P   ++L 
Sbjct: 73  EATATAFASLGRTLRQLG----APDAQLQVSCLPSFALQWLMPRLTDFHRLNPQTSVRLK 128

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ID   ++ D  D AIR   P    +L    L   ++ A AAP YL     P +  
Sbjct: 129 AEFHAIDQETMTADDIDVAIRW-DPFDYDALHVEPLFDEYLVAVAAPAYLDR-HPPRATA 186

Query: 185 E-----LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           E     +  H+   + D  PK +E   WL A V    GE R     + S    +   + G
Sbjct: 187 EWVSTIVPLHDASAWPD-APKFVEWRTWLDAVVPAYAGELRGPEFNLASL--AIGAALAG 243

Query: 239 SGIALLPDYIVKDNPNLVRIME 260
            G+A+    +V D     R+++
Sbjct: 244 QGVAVCRHALVDDEIARGRLVD 265


>gi|116253894|ref|YP_769732.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|241206376|ref|YP_002977472.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|115258542|emb|CAK09646.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|240860266|gb|ACS57933.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 297

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 144/298 (48%), Gaps = 28/298 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE G   
Sbjct: 6   RIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121
           +R  S++  +++     ++E++ +  G+LRI+        D+GQ+L+     +F    PD
Sbjct: 66  YRTASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLI-----DFAKENPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCR 178
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H  A P +L+   +  
Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRITK-LEDSGMIARKISDFRIHICATPEFLERYPDLD 179

Query: 179 EPLSIQELD---KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            P ++  +      N  T   +     ++ ++   V  PI        +VNS  + ++  
Sbjct: 180 HPTALSSVPFIVDTNARTQASIRFHNPDNTSFAVAVSGPI--------EVNSPHATLRAA 231

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G G+A +PD+I +   ++  LV +  D       +Y  YP       K++ F +++
Sbjct: 232 LAGIGVAFIPDFIARKPIESGELVTLFNDYTPTDRGIYAVYPHRRYLPAKVRIFVDYL 289


>gi|159186099|ref|NP_356363.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141233|gb|AAK89148.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 302

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 130/268 (48%), Gaps = 24/268 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG--- 63
           ++ VF   A   SF+ A  +L LS S++S+ ++ +E  +G +L  R  R +TLT +G   
Sbjct: 7   EMEVFVSAAELQSFSAAGRRLKLSPSAVSKLVTRIEDRLGTRLLVRSTRMMTLTPEGEIY 66

Query: 64  -SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            ++  R+ +++    +T QI      + P G LR+  ++  G+  L   +  FL LYP++
Sbjct: 67  LARARRILADIA---DTEQIVAAGGKLVPRGLLRVNASVGFGERFLLPLIPAFLELYPEV 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ + L +  I +  +  D AIR    +  SSL  RKL+       A+P Y+K    P +
Sbjct: 124 QLDISLTDGIIGLIEERTDIAIR-SGAMDDSSLKARKLLESRRVIIASPSYIKRHGMPQT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL------QVNSYLSIMQYCV 236
             +L  HN  +F     + + ++ +     R  G   I  L       VNS + + + C+
Sbjct: 183 PADLAAHNCFSFN--FRRSLNEWPF-----RDPGSTEIYRLPVSGNSSVNSGMIMRRLCL 235

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMED 261
            GSG+  +  + V+   D   LV ++ED
Sbjct: 236 AGSGLGRVGQFHVQPDIDAGTLVPVLED 263


>gi|325527485|gb|EGD04816.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 313

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP + ++L 
Sbjct: 67  DRCQRILAYIDEAEAEAADAQAKPSGRLHVHATTSFGQTYVVPAVVRYRQRYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P ++++L
Sbjct: 127 LSQHVPDIIDEGYDVSLQLSATELPDSGLVSQRLGEVHSVLCASPAYLKERGTPQTVRDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H  +    L+        W   +D P G    E   S  QVN   ++      G GI 
Sbjct: 187 EGHACL---QLVTPVFPRDRW--HLDGPDGRETFELPASDFQVNIADALGAALRAGLGIG 241

Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ +      TVY  YP       K++ F +F+
Sbjct: 242 SLPMSTALPALASGALVRVLPEYRLQKLTVYTLYPSRQYLDAKIRTFVDFL 292


>gi|73541641|ref|YP_296161.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72119054|gb|AAZ61317.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 304

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 16/270 (5%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           +A  GS + AA    ++ + I R+I  LE  +G+KL  R  R ++LT +GS        +
Sbjct: 1   MASRGSLSAAAGAEGVAPAIIGRRIDALEERLGVKLLIRTTRKISLTFEGSAFLEDCQRI 60

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
            + L   +  +    VK SG LR+      G+  +   +  F+  +PD+ I L L ++ +
Sbjct: 61  LNDLHNAEASVSAGGVKASGHLRVTAPAGYGRKHVAPLVPLFIESHPDVTITLDLSDRVV 120

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+  +  DCAIRL   +  SSL+  +L        A+P YL     P+  +EL  HN + 
Sbjct: 121 DLVNEGFDCAIRLGD-LPDSSLVSIRLAETRRVVVASPDYLARAGTPVLPEELQGHNCLA 179

Query: 194 FGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           FG           W+      TV   +G      ++      + ++C+ G G+A    + 
Sbjct: 180 FG---ASANVQRGWVFQQEGHTVTVKVG----GDMECTDGAVLHEWCLQGHGLAWRSWWE 232

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           V     +  LV ++++   P   ++  +P+
Sbjct: 233 VGSEIASGRLVTVLDEFQAPPIGIHAVFPQ 262


>gi|253687016|ref|YP_003016206.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753594|gb|ACT11670.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 301

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 139/296 (46%), Gaps = 10/296 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  +   GSF+ AAE+L L ++++S  I  LE  +G++L  R  R + +T++G   
Sbjct: 6   SMRVFVRIVELGSFSRAAERLALPRATVSNTIKQLEGRLGVRLLQRTTRQVQITDEGRVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++  ++E       +   +P GK+R+     L ++++   L +F   YP + + L
Sbjct: 66  YERCLQLLAEIEEIDTLFTQQKQQPVGKVRVDMPHSLARDIVVPALGDFYARYPQVTLML 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++  I++  +  DC +R  +     +L  R L ++     A+  YL     P S+ +L
Sbjct: 126 SANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQITCASADYLARYGVPRSLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+++ +  L  + +    +++  +R I     S LQVN   + +     G GI   P 
Sbjct: 185 SGHHMVGYFSLRTEYLYPLEFMSGNER-ITRMLPSILQVNGADAYIASACAGLGIIQAPR 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             ++   ++  LV I+ ++  P+  +Y  Y       G+  A R  +F++  D  F
Sbjct: 244 RGLRPFLESGELVEILPEIPPPAMPLYVMY-----APGRFLAPRIRVFIEWLDELF 294


>gi|190892400|ref|YP_001978942.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697679|gb|ACE91764.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 301

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 117/250 (46%), Gaps = 14/250 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GSF    + + LS+S+  + +  LE  +G +L  R  R L+LT++G   +  
Sbjct: 11  IFMAVVDAGSFIAGGQAMGLSRSAAGKAVIRLEDRLGTRLLNRTTRRLSLTDEGRLFYEH 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V   ++  +  +   S  P G LR+      G+ ++   ++++LL +PDIQ+++   
Sbjct: 71  GLGVLASVDEAEASVAGQSGAPRGVLRLTVPDAFGRLVVLPIVEKYLLAWPDIQVEVNFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++  DI  +  D AIR+     +S   L+ R +        A+P YL +  EP  I +L 
Sbjct: 131 DRKADIVEEGFDLAIRIGAMPSASENRLLSRVIAADRARLCASPSYLADRGEPCHIDDLA 190

Query: 188 KHNLITFGDLIPKC-----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+ + F     +       +D  W+    R       S L+++S  +I    V G GIA
Sbjct: 191 AHDCLVFSSRDQRQGWRFRGDDGAWVKAQGR-------SRLRLDSSEAIRDAAVAGLGIA 243

Query: 243 LLPDYIVKDN 252
           LLP ++   +
Sbjct: 244 LLPGFLAAGD 253


>gi|167564817|ref|ZP_02357733.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 317

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 115/254 (45%), Gaps = 18/254 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R GSFT AA+ LHL+QS+IS+QI  LE  +G  LF R +RGL LT +G  LH
Sbjct: 13  LRCFEAAGRLGSFTKAADALHLTQSAISQQIRQLEARLGYPLFVRQSRGLALTPKGGVLH 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+  +  L  T  +L      P  +L+++         L   L +F  L P   ++L 
Sbjct: 73  EATATAFASLGRTLRQLG----APDAQLQVSCLPSFALQWLMPRLTDFHRLNPQTSVRLK 128

Query: 128 LDNKDID---ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ID   ++ D  D AIR   P    +L    L   ++ A AAP YL     P +  
Sbjct: 129 AEFHAIDQETMTADDIDVAIRW-DPFDYDALHVEPLFDEYLVAVAAPAYLDR-HPPRATA 186

Query: 185 E-----LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           E     +  H+   + D  PK +E   WL A V    GE R     + S    +   + G
Sbjct: 187 EWVSTIVPLHDASAWPD-APKFVEWRTWLDAVVPAYAGELRGPEFNLASL--AIGAALAG 243

Query: 239 SGIALLPDYIVKDN 252
            G+A+    +V D 
Sbjct: 244 QGVAVCRHALVDDE 257


>gi|148553577|ref|YP_001261159.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498767|gb|ABQ67021.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 325

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 131/278 (47%), Gaps = 27/278 (9%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR-GLTLT 60
           +  WD L+ F  +AR+G  T AA QL +  +++ R+I  LE  +G +  +   R G  LT
Sbjct: 10  AMHWDDLQFFLSLARTGLLTIAARQLDVDATTVGRRIRRLERSLGGQTLFVQGRDGHVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIEL--------QESSVKPSGKLRIATTIDLGQNLLQGNL 112
           E G +L         ++ET + E         Q       G LR++ +   G  ++  +L
Sbjct: 70  EAGRRL-------LARVETIEREADAIAGGGDQADGEDVRGHLRVSASEGFGTWMVAHHL 122

Query: 113 KEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
            EF   +P + I L  ++  +D S   AD AI L +P Q   LI +KL    +  YAA  
Sbjct: 123 GEFAGAHPHLSIDLAANSGFLDPSRREADVAILLARP-QRGPLITKKLSDYRLCLYAARA 181

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLS 230
           YL       +  +L  H +I +   +P  +   + N+L  +  P  E R+    +N+   
Sbjct: 182 YLDRHPPIAARSDLPAHRMIGY---VPDLLYSPELNYLDELG-PAVEARLRSSSINAQYR 237

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDV-ITPSF 267
           ++     GSGI +LP +I   +  LVR++ +V IT SF
Sbjct: 238 MV---AAGSGIGVLPCFIGDRDGALVRVLPEVAITRSF 272


>gi|332307373|ref|YP_004435224.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174702|gb|AEE23956.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 292

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 137/289 (47%), Gaps = 16/289 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L +F  VA+  SFT AA+ L +S+  +S QI  LE ++G  LF R  R ++LTE+G+
Sbjct: 8   FERLILFSEVAKQLSFTRAAQVLSISRGYLSEQIRKLEQDMGKHLFIRSTRNVSLTEEGT 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    + +   L   + E++  +    G LR+       Q  L      F   YP I+I
Sbjct: 68  QLLAGMNHIKRSLLELEREVRHDNDTLEGILRLTAPSQFAQRYLLDLCSAFQADYPAIRI 127

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L       D++ +  D A R  + P Q  +++ +KL        A+P YL     P  +
Sbjct: 128 SLDCSYTTHDLNHNDFDLAFRATQTPPQ--NMVAKKLFDYRHMCCASPDYLAKNGTPNQL 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +       + M+     +  + P+  P    + V   L + ++ + G+GI L
Sbjct: 186 SDLRNHACLR------QNMKAQWQFSGQNIPVDGP----IAVTDNLILKKHALAGNGIIL 235

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +P+Y+V        LV ++ D +   F ++  +P+ ++ + +LKAF  F
Sbjct: 236 VPEYLVDKEIQQGLLVPLLTDYLQNDFAIHLIHPQLIQQSARLKAFIAF 284


>gi|193070762|ref|ZP_03051697.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|256020972|ref|ZP_05434837.1| putative DNA-binding transcriptional regulator [Shigella sp. D9]
 gi|293433197|ref|ZP_06661625.1| HTH-type transcriptional regulator ycaN [Escherichia coli B088]
 gi|300816997|ref|ZP_07097216.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300902943|ref|ZP_07120887.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|301302493|ref|ZP_07208624.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|332282195|ref|ZP_08394608.1| transcriptional regulator [Shigella sp. D9]
 gi|192955955|gb|EDV86423.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|291324016|gb|EFE63438.1| HTH-type transcriptional regulator ycaN [Escherichia coli B088]
 gi|300405004|gb|EFJ88542.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300530349|gb|EFK51411.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300842332|gb|EFK70092.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|315257940|gb|EFU37908.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|323175002|gb|EFZ60617.1| hypothetical protein ECLT68_0559 [Escherichia coli LT-68]
 gi|323185394|gb|EFZ70758.1| hypothetical protein ECOK1357_1347 [Escherichia coli 1357]
 gi|332104547|gb|EGJ07893.1| transcriptional regulator [Shigella sp. D9]
          Length = 302

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +         A P Y 
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               +P    +L  H  + F    P   + F+W    +  I       + ++   + ++ 
Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289
            ++G+GI  L    +K   D   L  ++ED  T  P F +Y  YP     +  L+AF ++
Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287

Query: 290 I 290
           +
Sbjct: 288 V 288


>gi|170740666|ref|YP_001769321.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194940|gb|ACA16887.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 312

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 2/188 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  +GS   AA +L L+ S++SR ++ LE  +G++L  R  R L LT +G   
Sbjct: 11  EMSAFLAVVAAGSLAGAARRLGLTPSAVSRIVARLEARLGVRLIVRTTRSLRLTAEGEVY 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +   L+ T+    +   +P G++R++     G+  +   L +F  L+P+I +++
Sbjct: 71  GRAARRILADLDETERAFADQG-RPRGRVRVSAATAHGRLAVVPLLADFAALHPEIVVEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  D+    AD AIR   P+    L  R+L        A+P YL     PL   +L
Sbjct: 130 DLSDELADVLGGRADVAIRF-GPLADGPLTARRLGETGRTVVASPAYLARAGTPLVPADL 188

Query: 187 DKHNLITF 194
             HN + F
Sbjct: 189 AAHNCLEF 196


>gi|84386490|ref|ZP_00989517.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84378595|gb|EAP95451.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 298

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 136/289 (47%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  +A + + + A ++L LS +  S  IS LE  +G++L +R  R ++LTE+G  
Sbjct: 4   EHLKLFVRLASTHNISMAGQELGLSPAVASSHISKLEDNLGVRLVHRTTRKVSLTEEGEA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   ++  +  +      P+G LR+  +   G+  L   L  FL  YP +++ 
Sbjct: 64  FLPHAEEVLSSVDAAKSAVGVGCDSPTGTLRVTASASFGRLHLVPALPGFLERYPGLKVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+     D AIR+ + ++ S+LI RKL T      A+P YL    +P + ++
Sbjct: 124 LRLSDSMVDVVEGGFDIAIRISE-LKDSTLIARKLATDKRIVCASPDYLIKYGKPATPRD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L+ H  I+   L        NW   T   P         + ++  ++      G GI + 
Sbjct: 183 LNDHQCISLIGL-------ENWTFNTESGPKTIKASGSFRADNGEALRDAASGGMGITVT 235

Query: 245 PDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289
            ++   +   +  LV+I+ED  +T    ++  YP       K++AF ++
Sbjct: 236 SNWCAYEQLKSGQLVQILEDYPLTSEPAIWAVYPSTRLLAPKVRAFIDY 284


>gi|332307635|ref|YP_004435486.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174964|gb|AEE24218.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 294

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 6/246 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  VA+  SFT  A+QL +S    S+ I+ LE + G  LF+R  R +TLTE G  
Sbjct: 5   DGMRTFIAVAKQKSFTGGAKQLGISTKLASKYIAQLEQKHGALLFHRTTRSVTLTETGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  + E  +  +Q      SG +R+      G   L   L  FL  +P I ++
Sbjct: 65  YFARCVPLLEQFEELEDVIQHRQSALSGTVRLTAPTAFGSTKLVDALAPFLAQHPKINVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ + I  +  D A+R   P++ S+LI ++L+ + +  +A+P YLK   +P     
Sbjct: 125 LNLSDQYVAIIDEGVDVAVRF-GPLKDSTLIAKRLMDMRIVFFASPEYLKRNGKPSHPCA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN +    L     +  NW    D       +S     NS  ++      G GI + 
Sbjct: 184 LATHNCL----LQTSQNDPENWKFKEDGNTFTVNVSGDFASNSPRAVTHMASQGLGIGMG 239

Query: 245 PDYIVK 250
           P Y+ +
Sbjct: 240 PQYVTE 245


>gi|330965087|gb|EGH65347.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 302

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 13/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++ F  +  +GSF+ AAE+++ + S+ISR +  LE  +G++L  R  R L++T  G +
Sbjct: 5   NAIKAFRNLVEAGSFSSAAERMNTTHSTISRHLQQLENVLGVQLVNRTTRQLSVTRAGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++  +LE   + +  +S K    LR++  + +G   L   L  F   YPDI+++
Sbjct: 65  YYLACIDILDRLEQAGLAVSHASQKLCATLRVSVPMVIGSLELANWLPAFQKRYPDIRLE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+     D A+R+ + +  +SLI R L    +   A+P Y+     P +  +
Sbjct: 125 LSCSDQFVDVVAGGFDLALRIAESLTDTSLIARLLAVSEVRLVASPGYIARHGLPRAAHD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H L+ F           +WL T      E RI     L  +S  ++    +  SGIA
Sbjct: 185 LKHHQLLGFSG------GSADWLLTSTTGQSE-RIKPAGMLCSDSITALHAAALAHSGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  V+      +LV I+ D        +  YP+    +  ++A  +F+
Sbjct: 238 AFTEITVRQQLAQGHLVTILPDWTLGQRRYHALYPQTRHVSPAVRALIDFM 288


>gi|330941811|gb|EGH44557.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 305

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAAESLHMPRASVTVLIKQLEAHLGVQLLQRTTRQVSATPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +        +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSAIGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +   C +R    +   +L+ R L ++     A+  YL+    PL++Q
Sbjct: 124 EIGMSDRPVDLIREGVGCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQHGTPLNLQ 182

Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           EL +H +I  F     KC   +      D    E   +C + VNS    +  C  G G+ 
Sbjct: 183 ELVQHQVIEYFSTSTGKC---YGLEFMADGMGVEHASACSIAVNSADGYVAACEAGFGLI 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P Y V     +  LV ++     P   +   YP   + + +++ F +++
Sbjct: 240 QVPRYHVAAQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWL 290


>gi|320324619|gb|EFW80696.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328991|gb|EFW84990.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330880707|gb|EGH14856.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 305

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 135/292 (46%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFAKAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMVVIPALPEFARRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +++  +  DC +R    +   +L+ R L ++     A+  YL+    PL++ 
Sbjct: 124 EIGMSDRPVELIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLQRYGTPLNLP 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L +H +I +            ++A    VD+ +       + VNS    +  C  G G+
Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMADGVEVDQALA----CSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V        LV ++     P   +   YP   + + +++ F +++
Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290


>gi|255588015|ref|XP_002534475.1| HTH-type transcriptional activator aaeR, putative [Ricinus
           communis]
 gi|223525223|gb|EEF27905.1| HTH-type transcriptional activator aaeR, putative [Ricinus
           communis]
          Length = 319

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 1/185 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A  GS++ AA +L +S S++S+ I+ LE  +GI LF R  R L LT +G  L   
Sbjct: 14  AFAKAAALGSYSAAARELGVSPSAVSKSIARLERHLGIPLFIRTTRSLRLTHEGEALQER 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  + E  Q     +   PSG +R+A    +G ++L   L  F   +P + + L + 
Sbjct: 74  AMRLLQEAEEIQQAAISTRNGPSGVIRVAAPYPIGVHVLGPALTRFRERHPGLMVDLRIR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+  +  D AIR+   I  S LI R+L    + A+AAP YL     P   +EL  H
Sbjct: 134 DQMADLISEGIDIAIRVGD-IPDSRLISRRLAPHRVCAFAAPGYLARKGTPRHPEELSGH 192

Query: 190 NLITF 194
           + + F
Sbjct: 193 DCVNF 197


>gi|49083700|gb|AAT51112.1| PA2838 [synthetic construct]
          Length = 324

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 9/245 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSFT AA+ L  S +++SRQ++GLE  +  +L  R+ R + +TE G + +
Sbjct: 7   IRTFVRVVEHGSFTQAAQALGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTESGLRYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +     ++++S    SG+LR+    +LG   L   L ++L  +PD+ + L 
Sbjct: 67  GHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPDVSVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L      +  +  D  I L + +  S+L+ R L  +     AAP YL     P + ++L 
Sbjct: 127 LAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPRTPEDLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
           +H  +      P C +   W    +R  GE  +     L+VN   +       G G+ LL
Sbjct: 187 RHRCLNVA--APSCPQ--GWAFVGER--GETLLDLDEALKVNLPEAACAAAAAGLGVCLL 240

Query: 245 PDYIV 249
           P ++ 
Sbjct: 241 PGFVA 245


>gi|33597515|ref|NP_885158.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33573943|emb|CAE38261.1| probable LysR family transcriptional regulator [Bordetella
           parapertussis]
          Length = 295

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 6/268 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +  V+A + SFT AA++L +S+S IS ++  LE E+G+ L  R  R +  TE G+ L   
Sbjct: 1   MLAVLADTRSFTAAAQRLGVSKSLISLRMKALEQELGVSLLLRTTRSVRPTEAGALLVER 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE +  E++  +  P G+LR+   + LG+  L   L      +PDI +++ L 
Sbjct: 61  ARPALDTLEDSLGEVRNLARAPRGRLRLTAPVALGRQHLGIWLARLGQHFPDIALEVYLS 120

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +++  +  D A+R    + S + + ++L     H  A+P YL     P    EL +H
Sbjct: 121 DRFVNLRQEGYDFALRHADQV-SDAYVSKRLCATRAHLVASPAYLARHGRPAHPSELARH 179

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +          F         +    + CL VN+   + +    G GIA++PD+ +
Sbjct: 180 RCLLYRGDERSPQWSFAPRQGRGAAVHVKPVDCLSVNNSELLRESAAHGLGIAMVPDFSL 239

Query: 250 KDNPNLVRIMEDVITPSFTVYFCYPEAL 277
            D  +L     + + P +  Y  +  +L
Sbjct: 240 GDCADL-----EPVLPQWDCYAGFGRSL 262


>gi|13474286|ref|NP_105854.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025038|dbj|BAB51640.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 306

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 3/187 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF  V   G+ + A   + +S +  S +I  LE  +G++LF R  R L  TE G+ 
Sbjct: 5   DNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTEHGTV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +V   +   +  +   S +P G +R+   + LG+ L+   + +F   YPDI+++
Sbjct: 65  FYSGAKQVLEAITEAEAAVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPDIEVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L + ++DI  +  D A RL   I+ SSL  R ++       AAP YL+   EP   QE
Sbjct: 125 LRLSDHNVDIMKEGIDVAFRL-GIIEDSSLRMRGIMECERVLVAAPKYLEARGEPAEPQE 183

Query: 186 L--DKHN 190
           L   KH+
Sbjct: 184 LIGKKHD 190


>gi|330875259|gb|EGH09408.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 299

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 134/287 (46%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F +V  + SFT A ++L +S S + + I  LE  +G++LF+R+ R + LT +GS     
Sbjct: 9   LFVLVTETRSFTLAGKRLGISSSGVGKSIGRLEESLGVRLFHRNTRSIALTLEGSIFLDR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +L+  Q+EL  +   P G+LRI+  +  G  L+   + +F+  YPDI++ +   
Sbjct: 69  CRRILSELDAAQLELSNARDLPKGRLRISVPLVFG--LVMPVVIQFMRTYPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R  +P   S L+ +++ +  +    +P Y    R  L  Q  D  
Sbjct: 127 DRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCVVGSPDYF--ARHGLPEQPADLV 183

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
           N        P   +  +W   + R  G       Q    N+   +++    G GI  LPD
Sbjct: 184 NHACLQHKFPSTGKFEHW--PLRREAGSEDFELPQTMVCNTTEVLVEVARAGLGITCLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++        LV I+ D    + +    +P +   + +L+ F +F+
Sbjct: 242 FMLASAIRKGELVPILADYTLHTGSFRLFWPSSKHLSVRLRVFIDFM 288


>gi|260428435|ref|ZP_05782414.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260422927|gb|EEX16178.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 298

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 129/288 (44%), Gaps = 11/288 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +WD +R+F  V R  S + A   L +  +++ R+++ LE  +G  LF +  +G  LT
Sbjct: 1   MRENWDDMRIFLAVGRGDSLSSAGRVLRMDPATVGRRVARLEETLGQTLFAKSPQGYALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L R   E    L      ++ +    SG++RI         LL     E     P
Sbjct: 61  EAGTRLLRHAEEAEQALGLGAQAVRGAGEGMSGQIRIGAPDGCANFLLPQVCAEIGAQNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++IQ++   + +++S   AD AI +  P  +  L+ +KL    +H  A+  YL      
Sbjct: 121 DLEIQIVALPRIVNLSRREADLAIGVSAPT-AGRLVVQKLADYKLHLAASEDYLARHPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S  +L  H ++ +   IP  +  ++ ++LA     +G  R+  L  NS      +   G
Sbjct: 180 RSRTDLKGHRIVGY---IPDMIFDKELDYLAD----LGLDRVG-LASNSVSVQFHWLRQG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +G+ ++ D+ +     L RI+   +    + Y       +  G+L  F
Sbjct: 232 AGVGIVHDFALPAASGLTRILPAEVELIRSFYLVRHADDRRVGRLNTF 279


>gi|26990316|ref|NP_745741.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985271|gb|AAN69205.1|AE016555_3 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 306

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 8/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +   GSF  A  QL    + +S+++S LET +GI+L  R  R L  T++G +
Sbjct: 10  DELATLLALYEQGSFAAAGRQLERHPTVLSKRLSALETRLGIRLVERSTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E    +   + E  E +    G+LR+A    +G+  L G L +F+L YP + ++
Sbjct: 70  LVAKVLEASRLIAEAEEEAAEGAATVRGRLRLALPAAMGRRWLSGMLADFVLAYPQVIVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++ +D+  +  D AIR+ + +  + L+  KL        A+P YL    EP   ++
Sbjct: 130 TEYADRFVDLIGEGFDAAIRIGE-LADNRLVASKLCDHVRILCASPQYLARHGEPAQPED 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F  L  +   ++  L +  R         L+ N   ++++    G GI    
Sbjct: 189 LAAHNCLGFNGL--RSFPEWR-LMSDTRQTSVKVAGSLRSNDNEALLEAARRGVGIVAGG 245

Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D+++ ++     LVR++    +  +  +Y   P A  NT  +  F+ ++
Sbjct: 246 DWLMGEDLASGCLVRVLAQWQLDKAAGIYLVRPTARLNTAAMGVFKAWL 294


>gi|167621768|ref|YP_001676553.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351509|gb|ABZ74239.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 305

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 136/297 (45%), Gaps = 14/297 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  AA    + +S +SR+++ LE ++G++L  R  R   +TE G
Sbjct: 3   DLNDLMFFGDVVTHGGFAAAARATGVPKSKLSRRVAVLEEQLGVRLIERSTRRFVVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H     +  + E     + ES  +P G +R +    + Q  L   L  F  LYP  +
Sbjct: 63  QAFHARCRAMVLEAEGAMALVAESRGEPRGLVRFSCPPGILQA-LSPLLPAFFSLYPGAK 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++  N  +++     D A+R+R  I + +SL+ R L + H    AAP   K   +   
Sbjct: 122 LSILSTNAPVNLIDQRIDVALRVRSSIDKDASLMTRGLASSHRILVAAPDVAKRLDD-AP 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+ L +   +TF D  P+          V     +PR++C ++    +++   V G+G+A
Sbjct: 181 IEALGQAPTLTFMDQ-PQSWGLTRGDGAVRTIELQPRLTCGEI---FTLINAAVGGAGVA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKAR 295
           LLPD+  +    +  LVR+  D   P  ++Y  +       G+    R FI +L AR
Sbjct: 237 LLPDHSCRRELASGALVRLWPDWSGPKSSIYLVF---TTRRGQPPVVRVFIDYLAAR 290


>gi|157377188|ref|YP_001475788.1| LysR family substrate binding transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157319562|gb|ABV38660.1| substrate-binding transcriptional regulator, LysR family
           [Shewanella sediminis HAW-EB3]
          Length = 299

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 17/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F V+A+ GSFT AAE L  S+S +S+Q+S LE  +G+ L  R  R   LTEQG +  
Sbjct: 10  IRAFTVIAKQGSFTQAAEVLGCSRSHLSKQLSQLERFLGVSLITRTTRAQRLTEQGQQFF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                    ++       +++    G++ I      +G+ ++   + +F+ LYPDI + L
Sbjct: 70  EQCQAALETIDGAVASTVDNARHLQGQININCVGGVIGEEIVTALVNDFIALYPDISVNL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+ +D  D   R+ + ++ S ++ RKL++I     A+P YL+    P   + L
Sbjct: 130 DFSSQRVDLVVDEFDLVFRMGE-LEDSGIVARKLMSIENMTMASPQYLERRGYPDHPKAL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
             H  IT G +        +WL   +  P  +  ++     +  +  ++    + G+GI 
Sbjct: 189 KDHLCIT-GSID-------HWLFEQESNPNNKVEVAIKGGFRCKNGRAMKASALAGNGIV 240

Query: 243 LLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LP  Y  ++  +  LV + E+        Y  Y +      +LKAF +F
Sbjct: 241 RLPKLYCPQELASGELVSVFEEWRVADTPFYLLYHKDRFQPARLKAFVSF 290


>gi|254250250|ref|ZP_04943570.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124876751|gb|EAY66741.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 328

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 120/285 (42%), Gaps = 6/285 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 31  IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 90

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 91  EAALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPMLAQLRRDHP 150

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P Q  +L+ R++  I +  YA   YL +   P
Sbjct: 151 GLVIELVPTDRIQDVLKREADIAVRMAPPAQ-DALVARRVGEIEVGLYARDDYLAHHGAP 209

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I  L  H LI F  + P     F   A    P+ +     L+ +S L+ +     G G
Sbjct: 210 ATIDALAHHTLIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYG 264

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           I      + K N  LVR++ D +      +    E L+ + + +A
Sbjct: 265 IGFCQSALAKRNARLVRVLPDALGMRLETWVVMHEDLRTSPRCRA 309


>gi|70729151|ref|YP_258887.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343450|gb|AAY91056.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 322

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 5/192 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GSF+ AA QL  S S++SR IS LE  +  +L  R  R L L++ G ++
Sbjct: 17  EMAIFVRVVETGSFSEAARQLGSSPSAVSRSISRLEKALATRLLQRTTRKLRLSDGGEEV 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  SE+     +      + + +  G +R++    +G+ ++  ++ EFL  YP + ++L
Sbjct: 77  FKRCSEMVSAARSVMEVSGQFTHEAEGVVRVSVPKAVGRFVVHPHMPEFLRRYPQVDVEL 136

Query: 127 ILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +++D+D+  D  D AIR+  R P     LI R+L+ I     A P YL     P   Q
Sbjct: 137 LHEDRDVDLIDDNVDLAIRITDRPP---PGLIGRQLLRIDHLLCATPQYLAEHGTPAHPQ 193

Query: 185 ELDKHNLITFGD 196
           +L +H+ I  G+
Sbjct: 194 DLRQHSCIYLGE 205


>gi|319791811|ref|YP_004153451.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594274|gb|ADU35340.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 352

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 129/277 (46%), Gaps = 22/277 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D+LR+F  VA   SF+ AA+QL L+++ +S  +  LE  +G +L  R  R + LTE 
Sbjct: 1   MNTDELRIFSRVAELASFSRAADQLGLTRARVSVAVQHLEKRLGTRLLQRTTRSVRLTED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +   + E      + ++   +G+LRI     L ++L+   L EFL  +P +
Sbjct: 61  GERFLDRCRDYLSEGEQLATMFRANTGGLTGRLRIDLPATLARDLVIPRLPEFLARHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I +   ++ +D+  +  DC +R+   +  S LI R L  + M   A+P YL+    P +
Sbjct: 121 EIGISTTDRRVDLVNEGFDCVLRV-GVLGDSELIARPLGFMRMANAASPAYLQAHGTPHT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLG 238
           + EL +H ++ F   +     D  W    D   G  RI    + + VN   +     V G
Sbjct: 180 LAELAQHRIVHFAQTL--SPNDAGW-EYFDAAQGRYRIKPVRAIVTVNGTDAYNAAAVAG 236

Query: 239 SGI------ALLPDYIVKDNPNLVRIMEDVITPSFTV 269
            G+       LLP +      +LV +M     P+FT 
Sbjct: 237 LGLIQAPVGGLLPCFAAG---SLVEVM-----PAFTA 265


>gi|167561268|ref|ZP_02354184.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 320

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 1/186 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   +  +   YPD+ +++ 
Sbjct: 67  ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYPDVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P ++ +L
Sbjct: 127 LSDRIVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPEYLAKHGTPTTVADL 186

Query: 187 DKHNLI 192
            +HN+I
Sbjct: 187 QRHNII 192


>gi|90411752|ref|ZP_01219761.1| hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90327314|gb|EAS43678.1| hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 306

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  SFT AA+ L +S++ +S+QI  LE  +G++L  R  R   LTE G   
Sbjct: 7   QMVVFNALTKQQSFTRAAQLLDISRTQVSKQIQQLEERLGVQLVQRTTRSFALTEAGRSF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + V  ++   + EL   +    G LR+        N +   + EF  LYP + +++
Sbjct: 67  SVHCANVVGEINEAESELLSETDSLQGALRVGIAQSFASNHIAPFISEFHDLYPQLDLEM 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I           + R L+  +    A+P YL     P    +L
Sbjct: 127 SLFDYRVDLIAEQLDLWIGFMDS-PPEGFVARHLIDCNFVLAASPAYLAKHGVPYHPNDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN IT+     +  +D  W    +    + ++    +V+S  SI    + G+GI  L 
Sbjct: 186 KDHNCITY---FSRERKDNVWSFRKEEESHQIKVKGNYRVDSADSIRDATLTGNGIGYLA 242

Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y++KD      L+R+M D  +T    +Y  YP       K++ F +FI
Sbjct: 243 TYLLKDELQKGQLIRLMPDWDLTQYMPLYAVYPRHKYLPQKVQVFIDFI 291


>gi|56475859|ref|YP_157448.1| transcription regulator protein [Aromatoleum aromaticum EbN1]
 gi|56311902|emb|CAI06547.1| transcription regulator protein [Aromatoleum aromaticum EbN1]
          Length = 299

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 21/274 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R + LT +G+      
Sbjct: 10  FVSVASRGSLSAAARAEGVTPAIIGRRLDALEQRLGVKLLTRTTRSIALTFEGAAFLEDC 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             + H L   +  +    VK SG +R++     G+  +   +++FL + P++   + L +
Sbjct: 70  QRILHDLANAEASVSLGGVKASGHIRVSAPAGFGRIHVAPLMQDFLEMNPEVSCMMDLSD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  DCAIR+ + +  SSL+  +L        A+P YL     P+  Q+L  H 
Sbjct: 130 RVVDLVNEGIDCAIRIGE-LPDSSLVSIRLAENRRVVVASPAYLARFGTPVVPQDLSGHK 188

Query: 191 LITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            ++ G       +   WL       T+   +G  R  C   N    + ++ + G G+A  
Sbjct: 189 CLSLG-------QQRGWLFRDEDGETITLKVG-GRFEC---NDGAVLHEWALAGHGLAWR 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
             + V  +     LV +++    P+  +Y  +P+
Sbjct: 238 SLWEVDADLRAGRLVSVLDTFAAPTTGIYAVFPQ 271


>gi|325521493|gb|EGD00309.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 284

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  VA+SGS + AA +L +  +++SR++S LE+E+ ++L  R  R   LT  
Sbjct: 2   FDWENLRCFVAVAQSGSLSAAARRLKVDHATVSRRVSALESELKVRLLDRLPRACRLTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G+++         K+E     ++  ++       G + ++    L  N    +L  F  L
Sbjct: 62  GTQV----LAFAQKMEENAFAIERLALAEHLPMHGTVTVSVPPVLASNFFANHLHAFARL 117

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P I++ L+   + + +    AD AIRL +P +  S + RKL  +    YA+  Y  +  
Sbjct: 118 HPGIRLALVSQVQSVSLGRREADIAIRLFRPEEPQS-VTRKLGVMAFALYASRDY-AHAS 175

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +P      D+   I + D     M    WL ++       RI+C +V+   +       G
Sbjct: 176 QP------DRWAFIAY-DAQYAEMPHQKWLQSI---ADGRRIAC-EVSDITTQQAAARTG 224

Query: 239 SGIALLPDYIVKDNPNLVRIMED 261
            G+A LP +I  ++P L R+  D
Sbjct: 225 IGVAGLPVFIGDNDPALQRLPFD 247


>gi|331667720|ref|ZP_08368584.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331065305|gb|EGI37200.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
          Length = 257

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 3/239 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP
Sbjct: 189 DHQAINL--YLPTSGTANRWKLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245


>gi|309782827|ref|ZP_07677547.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308918251|gb|EFP63928.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 306

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 12/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GS + AAE + +S+  IS+ ++ LE  +  +L  R  R L+LTE G+     
Sbjct: 9   IFVQVVERGSLSAAAEAMGMSRGVISKALARLEARLQTRLLQRTTRRLSLTEAGAAFFEK 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           + E    ++  +  +     +  G LR++        LL   L  F   YP +QI L ++
Sbjct: 69  SREGLALVDAAEQAVSALRDEARGTLRVSAPASFAVTLLAPLLGAFQARYPAVQIDLDMN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+     D AIR+   +  SSL+ R+L       Y AP Y +    P S ++L  H
Sbjct: 129 DRYADLVAGRIDVAIRI-GMLGDSSLVARRLANCAHAIYGAPSYFRERGIPQSPEDLRNH 187

Query: 190 NLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           N + + +         +W+   A   R I     S L  NS L + +    G G++L P 
Sbjct: 188 NCLVYANYDGP----HDWVLTDAAGHRHIAHVAGSMLANNS-LVLREAARSGLGVSLGPA 242

Query: 247 YIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+V+D+    R   ++ D       ++  + + +    K++AF +F+
Sbjct: 243 YLVRDDVAAGRLQAVLTDYTAREVPLHAVFTQRVHLLPKVRAFVDFL 289


>gi|331667276|ref|ZP_08368141.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331065632|gb|EGI37525.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
          Length = 302

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYEQLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +         A P Y 
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               +P    +L  H  + F    P   + F+W    +  I       + ++   + ++ 
Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289
            ++G+GI  L    +K   D   L  ++ED  T  P F +Y  YP     +  L+AF ++
Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287

Query: 290 I 290
           +
Sbjct: 288 V 288


>gi|167915666|ref|ZP_02502757.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
          Length = 306

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++ +S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 5   DRFDVFRAVVEAGSFTGAANVLNQARAVVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++++
Sbjct: 65  FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178
           L       D+  D  D AIRL +  Q   L  R +   T  +   A+P     H +    
Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++  L +        +    + D +    V RP  +P    L  ++   +  +   G
Sbjct: 185 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKP---YLIADNASVLRAFAQQG 241

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290
            G+ALLP+++V+D+     +++ +    F    VY  YP A     K++A+ +FI
Sbjct: 242 DGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 296


>gi|322832357|ref|YP_004212384.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167558|gb|ADW73257.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 299

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 146/303 (48%), Gaps = 22/303 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR GS T AA +L ++  S+S+ +  LE  +G  LF R  R + LT+ G 
Sbjct: 6   YNQIRIFQSIAREGSITAAARKLEITPPSVSKALKLLEQHIGHPLFVRTTRRIELTDAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L + TS     LE+    +++ + +PSG +RI  +      +L+  + EF   YP IQ+
Sbjct: 66  QLLQQTSRAVASLESAVESIKDLNQEPSGLVRITLSRFAYLLILKPFMAEFCQSYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  +++  +  D  IR    ++ S + +  +       YA+  YL     P    
Sbjct: 126 EISVYDGTVNMVDERFDLGIRFGDILEESVVARPLMKPFREGLYASAAYLAEHGTPKLPA 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV--- 236
           +L +H LI +       L+P  +ED     TV+ P G+       +++ + +M   +   
Sbjct: 186 DLHQHQLIGYRFITNNRLLPLMLEDKGQQLTVEMP-GQ------LISNDIDVMADGIRSG 238

Query: 237 LGSGIALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK---LKAFRNFIFL 292
           LG G    P Y ++ D    + +M         VY  Y   LKNTGK   +KA  +F+ +
Sbjct: 239 LGIGRLFEPVYELQPDKEQFIPVMMPYWKTYPPVYLYY---LKNTGKAKRVKALIDFLMM 295

Query: 293 KAR 295
           K +
Sbjct: 296 KTK 298


>gi|260464022|ref|ZP_05812217.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259030193|gb|EEW31474.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 296

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 143/300 (47%), Gaps = 19/300 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  V  +GSFT AAE+L ++++ +S+Q++ LE E+   L  R  R L  TE G  
Sbjct: 7   NRLAYFATVIDAGSFTRAAERLGITKAVVSQQVARLEAELQTTLLVRTTRRLEPTEAGRL 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           LH     +   +E    E+ E + + +G LR++ + D G  +L      F   +P   ++
Sbjct: 67  LHARCVMILRDVEEAVAEVAEGNTEVAGVLRVSASNDYGAIVLAPIAARFRQEFPACGVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--EPLSI 183
           L + +  ID+     D +IR+   ++ SSL  R++ T      A+  +       EP   
Sbjct: 127 LFISDAIIDLIGSKMDLSIRV-GWLEDSSLQARRIGTFRQILVASRDFAAKVTVDEP--- 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGS 239
           ++L    L+    L     + F W  +  R   EPR   ++    +NS  ++++  + G 
Sbjct: 183 EDLASLPLVANSVL----RKPFTW--SFTRGDVEPRTVTMRETFSINSTPAVLEATLAGG 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+A+LPDY++ D      LV ++ D   PS  ++  YP A     K+  F + +  + R+
Sbjct: 237 GLAVLPDYLIADYLSQGRLVHMLSDWALPSGGIHVVYPAARFRPQKVTRFVSMLMEQIRE 296


>gi|17548051|ref|NP_521453.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430357|emb|CAD17122.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 298

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 126/283 (44%), Gaps = 20/283 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q +  R +  LE  +G  LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L R  +E    LE+T   L  ++        G +RI  +  +   +L   L +    YP
Sbjct: 68  AL-RPYAE---SLESTSAALLRAASSQGEGVRGTVRITASEVVTAEVLPAILADLHAAYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L+  N+  D+    AD A+R+++P Q   L+ R +  I +  +A   YL+    P
Sbjct: 124 GLILELVPSNRLEDLLRRDADIAVRMQRPSQ-GVLVARHIGGIELGVHAHRRYLERRGTP 182

Query: 181 LSIQELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            ++ +L  H LI +      I        W+   DR         L+ +S L+ +     
Sbjct: 183 ATLDDLAGHALIGYDKETAFIRGMKGQVPWMRR-DR-------FALRTDSDLAGLAALRA 234

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
           G GI +    + + +P+LVR+  D + P    +    E L+ +
Sbjct: 235 GFGIGICQVGLARRDPDLVRLFADDVAPVLDTWLAMHEDLRES 277


>gi|157161263|ref|YP_001458581.1| LysR family transcriptional regulator [Escherichia coli HS]
 gi|170019856|ref|YP_001724810.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739]
 gi|188492998|ref|ZP_03000268.1| transcriptional regulator, LysR family [Escherichia coli 53638]
 gi|300917631|ref|ZP_07134282.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300951404|ref|ZP_07165246.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300956701|ref|ZP_07168975.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|301645691|ref|ZP_07245618.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|312969835|ref|ZP_07784018.1| uncharacterized HTH-type transcriptional regulator yeaT
           [Escherichia coli 1827-70]
 gi|157066943|gb|ABV06198.1| transcriptional regulator, LysR family [Escherichia coli HS]
 gi|169754784|gb|ACA77483.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|188488197|gb|EDU63300.1| transcriptional regulator, LysR family [Escherichia coli 53638]
 gi|300316501|gb|EFJ66285.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300415148|gb|EFJ98458.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300449394|gb|EFK13014.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|301076063|gb|EFK90869.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|309702021|emb|CBJ01335.1| LysR-family transcriptional regulator [Escherichia coli ETEC
           H10407]
 gi|310338120|gb|EFQ03209.1| uncharacterized HTH-type transcriptional regulator yeaT
           [Escherichia coli 1827-70]
 gi|332343524|gb|AEE56858.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 307

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 139/290 (47%), Gaps = 11/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L     +    +I +    F  W L   + P        L  N    + Q+C+ G GIAL
Sbjct: 187 LSALPCL----VIKERDHPFGVWQLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGIAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 243 RSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|262278718|ref|ZP_06056503.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259069|gb|EEY77802.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 301

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 130/262 (49%), Gaps = 16/262 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+  A    ++ S++S+ I+ LE  +G++L  R  R   LT +G + 
Sbjct: 11  ELAIFIRVVELGSFSAVARACDMTPSAVSKLIARLEKRLGVRLLNRSTRQFQLTSEGCQF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +    ++  +L+    EL++S      P G++RI T+     + L   +  F   YP I+
Sbjct: 71  YEQGLQILSELD----ELEQSVTANHTPKGRIRIHTSFSYWTHFLLPCISLFNQRYPQIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  L ++ I++     D AIR   P++SS+L+ R L +   H   +P Y+  C  P   
Sbjct: 127 LEAHLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTQKHYVCSPTYITQCGCPQHP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL +H L+     +    ++  WL    ++ I       L+VN   +I+Q  +  +GIA
Sbjct: 186 DELSEHQLLD----VSYQRQNKTWLFQKENQEITLVPTQVLRVNHGEAILQLALADAGIA 241

Query: 243 LLPDYIVK---DNPNLVRIMED 261
            L ++ V+   +   L++I+ED
Sbjct: 242 QLNEFQVRKALEQKQLIKILED 263


>gi|257484260|ref|ZP_05638301.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331008330|gb|EGH88386.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 299

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 131/289 (45%), Gaps = 22/289 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   SFT AA +L  SQS++S +I  LE  +G++L  R  R ++ T  G +L 
Sbjct: 9   LMAFVAVAEERSFTRAAGRLGTSQSALSHKIRRLEARLGVRLLTRTTRSVSPTAAGERLL 68

Query: 68  RVTSEVYHKLETTQIE-LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    + T Q+E L +   KP+G +RI T   + + +L   L  +L  YPDI++++
Sbjct: 69  ETLKPALADI-TAQLESLTDVRDKPAGSIRITTADHVAETILWPALNRWLPKYPDIEVEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSL------IQRKLVTIHMHAYAAPHYLKNCREP 180
            +DN  +DI  +  D  IRL + +    +      ++R ++        +P YL     P
Sbjct: 128 TVDNGFVDIVAERFDAGIRLGENLDKDMIALPIGPMERCVIV------GSPSYLAKYPVP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
               +L  H  +      P       W    D    + R+S  +  N    I++  V G 
Sbjct: 182 THPDQLVNH--LCINRRFPSLNGKSAWHFEKDGQATQVRVSGQVAFNRPEMILEAAVAGY 239

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLK 284
           G+A L D  V    +   LVR+++D   P+F  Y+  YP   +NT   +
Sbjct: 240 GLACLLDSQVIHQVEAGRLVRVLDD-WCPAFPGYYLYYPSRRQNTSAFQ 287


>gi|206560893|ref|YP_002231658.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198036935|emb|CAR52844.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 308

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 127/290 (43%), Gaps = 22/290 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF      GS   AA +  LS S   + +S +E ++ ++L  R  R LTLT+ G   +
Sbjct: 7   MAVFVSAVEEGSLVSAARRFGLSPSMAGKHVSAIEEQLKVRLLQRSTRKLTLTDVGRSYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + E    E Q++     G LR+A     G   L   +  +L  YPD+ I+  
Sbjct: 67  TRCKRLLEEYEDANREAQDAQQSVHGILRVAAPTTFGALHLGRVVSSYLAEYPDVSIETT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  D  D AIR+ + +Q S L+ R+L +  M   AAP +L    EP ++++L 
Sbjct: 127 LSDRYVDLLADGIDVAIRIGR-LQDSDLVARRLASCRMMFCAAPSFLARHGEPKTVEQLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLAT--------VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +   + F   +       +W  T        +D  I       L  N+   ++   + G+
Sbjct: 186 QAPRLAFSQAVSAG----DWSVTDANGQTHHIDGAIR------LAANNMQMLLAAALTGA 235

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+   P ++ +    +  L  ++ D  T    ++  YP     + K++ F
Sbjct: 236 GVVYGPSFVFEQSIASGALRVLLPDHKTTDLAIHAIYPSKRHVSLKVRRF 285


>gi|167589471|ref|ZP_02381859.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 313

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP + ++L 
Sbjct: 67  DRCQRVLAYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRERYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L T+H    A+P YL+    P +I++L
Sbjct: 127 LSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGTVHSVLCASPAYLREHGTPQTIKDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H  +    ++        W   +D P G    E  +   QVN   ++      G GI 
Sbjct: 187 EAHACL---QIVTPVFPRDRW--HLDGPDGRETFELPLPDFQVNVADALGAALRAGLGIG 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ +      TVY  YP       K++ F  F+
Sbjct: 242 SLPMSTAVPALRSGALVRVLPEYRLQKLTVYTLYPSRQYLDAKIRTFVEFL 292


>gi|167568487|ref|ZP_02361361.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 320

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 1/186 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   +  +   YPD+ +++ 
Sbjct: 67  ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYPDVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P ++ +L
Sbjct: 127 LSDRIVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPEYLAKHGTPTTVADL 186

Query: 187 DKHNLI 192
            +HN+I
Sbjct: 187 QRHNII 192


>gi|160899021|ref|YP_001564603.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364605|gb|ABX36218.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 310

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 1/192 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ +F  V  +GSF+ AA QL  + S+ SR ++ LE  +G++L  R  R L L+E G 
Sbjct: 10  FGEMAIFVKVVDTGSFSEAARQLGSTPSATSRGVARLERALGLRLLERTTRKLRLSEAGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++H    ++    +           +P G +RI+    +G+ ++  ++ +FL LYP++ +
Sbjct: 70  EVHARCLDMVGAAQAVMAASLRQDAQPRGLVRISVPKAVGRTVVHPHMPDFLALYPEVDV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L+++ +D+  D  D AIR+        L+ R L+ I     A+P YL     P+   
Sbjct: 130 QMRLEDRYMDLIDDPVDLAIRITN-HPPPGLMGRHLMDIDHLLCASPQYLARHGTPVHPL 188

Query: 185 ELDKHNLITFGD 196
           EL  H+ I  G+
Sbjct: 189 ELKAHSCIYLGE 200


>gi|70729631|ref|YP_259370.1| LysR substrate binding domain-containing protein [Pseudomonas
           fluorescens Pf-5]
 gi|68343930|gb|AAY91536.1| LysR substrate binding domain protein [Pseudomonas fluorescens
           Pf-5]
          Length = 314

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 113/259 (43%), Gaps = 10/259 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  V   GSF+  A +  L+ SSISRQI  +E  +G +L YRH R ++ TE G  L 
Sbjct: 12  LRLFIAVLDQGSFSAVARREGLAPSSISRQIQLMEQALGQQLLYRHTRAVSPTEAGRLLG 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  + E  +  LQE   +P+G +RI   +  GQ  L   L E    YP +Q+ + 
Sbjct: 72  HHARRVLAQWEEAEQALQEQQDEPAGLVRINAPVVFGQRHLSPWLGELHGRYPKLQLDIQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ ID   D  D   R+   ++ SS+  R L        A+P YL     P   ++L 
Sbjct: 132 QTDRYIDPLQDGTDLLFRIGT-LEDSSMQARLLAPQRYRVAASPAYLARHGTPQHPEQLQ 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALLP 245
           +H  + +     +      W     R    P      L  N   ++ Q    G G+ + P
Sbjct: 191 RHQCLAYKGETGQQ----RWFFRQGRADWTPYSVKGPLTGNHADTLTQAAEQGLGLVMFP 246

Query: 246 DYIVKD---NPNLVRIMED 261
            +++ +      LV + ED
Sbjct: 247 SWLIGEALHQGRLVALFED 265


>gi|194434385|ref|ZP_03066648.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|194417369|gb|EDX33475.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|332095957|gb|EGJ00964.1| hypothetical protein SD15574_1256 [Shigella dysenteriae 155-74]
          Length = 302

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAAQVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +         A P Y 
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               +P    +L  H  + F    P   + F+W    +  I       + ++   + ++ 
Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289
            ++G+GI  L    +K   D   L  ++ED  T  P F +Y  YP     +  L+AF ++
Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287

Query: 290 I 290
           +
Sbjct: 288 V 288


>gi|118496716|ref|YP_897766.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. novicida U112]
 gi|194324023|ref|ZP_03057798.1| transcriptional regulator, MarR family [Francisella tularensis
           subsp. novicida FTE]
 gi|118422622|gb|ABK89012.1| transcriptional regulator, LysR family [Francisella novicida U112]
 gi|194321920|gb|EDX19403.1| transcriptional regulator, MarR family [Francisella tularensis
           subsp. novicida FTE]
          Length = 298

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 141/291 (48%), Gaps = 19/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
              FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT +G  L 
Sbjct: 12  FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71

Query: 68  RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                + ++++  + +L ES  K PSG L+I+T+    QN+L   +KE+   +  ++I++
Sbjct: 72  NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++ K  +   + AD  + +   P +   ++ RK+ T      A+P Y+     P +I +
Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--DIVARKIATTRYVLCASPAYINKNGSPSNISD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242
           L  HN I     +         L  + +    P+   S +  N+ +  ++ CVL   GIA
Sbjct: 189 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +YIVKD   N  L+ +++D       +Y  YP+      K+K F N +
Sbjct: 241 QFHEYIVKDEIRNGQLIELLKDDFFDQQDIYIYYPKNKFVQPKVKEFVNLV 291


>gi|120597550|ref|YP_962124.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120557643|gb|ABM23570.1| transcriptional regulator [Shewanella sp. W3-18-1]
          Length = 302

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 15/296 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AA+ L LS+  +SR I  +E  + ++L +R  R ++LT QG +  
Sbjct: 7   IRSFVEVANCGSFTKAAQHLDLSRLQVSRHIQEIEQWLNLRLLHRTTRSVSLTLQGEETL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ L+P + IQL 
Sbjct: 67  QYCQRLLSEVAAMESRAHSHNTELVGSIRIATPIGLGQHSLFDVVDRFIKLHPKVNIQLA 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +    +  +  D A+R   +P    +LI R+L+ I     AAP YL N   PL+    
Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARRLMMIDAVVCAAPTYLANT-SPLN---- 179

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +  +L+    L+      +++L      + +     L+ N    ++   + G GI  LP 
Sbjct: 180 EPIDLLAHNCLVHTAQHSWHFLKEKQSEVIKV-TGNLKANDMGVLVSAALRGHGIVRLPC 238

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +      +  L  ++ D  TP  T++  Y   L  + +    R FI   A+ W+ 
Sbjct: 239 DLANQYLASGQLQEVLPDFTTPGQTLWAVY---LSRSYQQMLVRAFIDFTAQQWQL 291


>gi|146294309|ref|YP_001184733.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145565999|gb|ABP76934.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 302

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 15/296 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AA+ L LS+  +SR I  +E  + ++L +R  R ++LT QG +  
Sbjct: 7   IRSFVEVANCGSFTKAAQHLDLSRLQVSRHIQEIEQWLNLRLLHRTTRSVSLTLQGEETL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ L+P + IQL 
Sbjct: 67  QYCQRLLSEVAAMESRAHSHNTELVGSIRIATPIGLGQHSLFDVVDRFIKLHPKVNIQLA 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +    +  +  D A+R   +P    +LI R+L+ I     AAP YL N   PL+    
Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARRLMMIDAVVCAAPTYLANT-SPLN---- 179

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +  +L+T   L+      +++L      + +     L+ N    ++   + G GI  LP 
Sbjct: 180 EPIDLLTHNCLVHTAQHSWHFLKEKQSEVIKV-TGNLKANDMGVLVSAALRGHGIVRLPC 238

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +      +  L  ++ D   P  T++  Y   L  + +    R FI   A+ W+ 
Sbjct: 239 DLANQYLASGQLQEVLPDFTAPGQTLWAVY---LSRSYQQMLVRAFIDFTAQQWQL 291


>gi|330977894|gb|EGH77797.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 208

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 92/189 (48%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q+
Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERPPVPLQPQD 186

Query: 186 LDKHNLITF 194
           L +   I  
Sbjct: 187 LTQQTCINI 195


>gi|188993307|ref|YP_001905317.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735067|emb|CAP53279.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 308

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 138/296 (46%), Gaps = 14/296 (4%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           MS D  W+  R F  V  +GS + AA QL ++Q ++  +I+ LE  +G  LF R   GL 
Sbjct: 1   MSHDIAWEDQRTFLAVLDTGSLSAAARQLGVAQPTVRARIASLEAALGTTLFTRAITGLI 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEF 115
            T +   L      +      + + +  +S  P   +G +RI+ +  +G  +L   L   
Sbjct: 61  PTSEARGLEAAARTMA---RASAMFVWLASSPPGLVAGTVRISVSDFVGVEVLPAMLARL 117

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              +P I  +L+L N   D+     D A+R++ P Q  +L+ RK+  I +  +A   Y+ 
Sbjct: 118 RQKHPHIVTELVLSNTPADLLEQEVDIAVRMQPPTQ-GALVARKVGAIALGLFAHRDYIA 176

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P +++ L +H LI       +   D +    +   +   R++  + +S+ + +   
Sbjct: 177 RRGAPATVEALLEHELIGPD----RNRADLSLARALHPHLLRDRLAT-RTDSHPAQLALA 231

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G GIA+    I + +P LV+++ +V  P+ T +    E L++  +++A  N + 
Sbjct: 232 RAGLGIAIAQCPIARADPCLVQVLPEVALPALTTWIVTHEDLRDVPRIRATFNHLV 287


>gi|116053902|ref|YP_788339.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115589123|gb|ABJ15138.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 311

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 9/187 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ F   A +GSF  AA +L L+ + + + ++ LE+ +G++LF R  R LTLTE G   
Sbjct: 6   NIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAG--- 62

Query: 67  HRVTSEVYHKLETTQIELQE-SSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            R   EV   LE  Q  L   SSV  +PSG L+++  +  G++ +   L EFL  YPDI 
Sbjct: 63  ERFLQEVGGSLEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREP 180
                DN+ +D+  +  D AI     +    ++ R L   H+   A+P YL++    R P
Sbjct: 123 PDWHFDNRQVDLIGEGFDAAIGGGFELPPPGVVARNLTPGHLILLASPAYLRDKPPIRHP 182

Query: 181 LSIQELD 187
             +   D
Sbjct: 183 GDLGGFD 189


>gi|330971177|gb|EGH71243.1| transcriptional regulator, lysr family protein [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 296

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 131/273 (47%), Gaps = 13/273 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA+  SFT AA +L +SQS++S  +  LE  +G++L  R  R ++ TE G +L 
Sbjct: 9   LLAFLAVAKERSFTKAAARLGVSQSALSHTVRSLEARLGLRLLTRTTRSVSPTEAGERLI 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIAT---TIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     + ++E     L +    P+GK+RI     ++DL   +++  LK FL  YPDI +
Sbjct: 69  QKVGPHFDEIEIELAGLSDLRDTPAGKIRINAMDHSLDL---IIRPVLKTFLHKYPDISV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D   +DI+ +  D  +RL + +    +  R    + +    +P Y +   +P + +
Sbjct: 126 EVCCDYSFVDIAAEGFDAGVRLGEAVADGMIATRIGPDMRLSVVGSPAYFEGRTKPETPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H        +P     + W    D      R++  +  N    ++   + G G++ 
Sbjct: 186 DLTAHRCNNL--RLPTNGGLYAWEFAKDSETLNVRVTGQVTFNGVYPLLDAALDGFGLSY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           +P  +V ++     L++++ED  +P+F  +  Y
Sbjct: 244 IPHDLVAEHIEAGRLIQVLED-WSPTFAGFHLY 275


>gi|209918150|ref|YP_002292234.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|209911409|dbj|BAG76483.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|324019008|gb|EGB88227.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
 gi|324116113|gb|EGC10037.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
          Length = 302

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYEQLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +         A P Y 
Sbjct: 121 DIKVELTTDDTLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               +P    +L  H  + F    P   + F+W    +  I       + ++   + ++ 
Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289
            ++G+GI  L    +K   D   L  ++ED  T  P F +Y  YP     +  L+AF ++
Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287

Query: 290 I 290
           +
Sbjct: 288 V 288


>gi|254185061|ref|ZP_04891650.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184215653|gb|EDU12634.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 312

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++ +S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 11  DRFDVFRAVVEAGSFTGAANVLNQARAVVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++++
Sbjct: 71  FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178
           L       D+  D  D AIRL +  Q   L  R +   T  +   A+P     H +    
Sbjct: 131 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 190

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++  L +        +    + D +    V RP  +P    L  ++   +  +   G
Sbjct: 191 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKP---YLIADNASVLRAFAQQG 247

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290
            G+ALLP+++V+D+     +++ +    F    VY  YP A     K++A+ +FI
Sbjct: 248 GGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFI 302


>gi|217979712|ref|YP_002363859.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
 gi|217505088|gb|ACK52497.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 307

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 136/301 (45%), Gaps = 20/301 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +RVF  V  +GSF+ AA  + ++ SS ++ I  +E  +  +L  R  R L LT +G 
Sbjct: 7   WE-MRVFLQVVAAGSFSAAARIVGMTPSSTAKLIGRIEGRLAARLIERSTRSLRLTSEGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L+    E+   +  P+G +RI  ++  GQ+ L   L  F   +P I++
Sbjct: 66  LYRERAEAILGDLDALDAEVVGEARAPTGLIRINVSVPFGQHCLMPQLPAFAREFPKIRL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D+    AD A R+ + +  S L+  +L        A+  YL+    P ++ 
Sbjct: 126 DLTLTDDVVDLYATGADIAFRIGQ-LADSELLAIRLGDARRRIVASKTYLEEYGIPRTVA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV------DRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +LD+H  + F         +F   A V       R         +  N+  ++     LG
Sbjct: 185 DLDRHKCLGF---------NFRRAAAVWPLQAGGRLTDREAQGAITANNGETLRCLATLG 235

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+A L ++ +K++     LV +++D +  S  V+  Y        +++AF +F+  + R
Sbjct: 236 LGLARLAEFHIKEDLKAGRLVTVLDDALVDSEAVHALYLGREHAPRRVRAFLDFMTPRLR 295

Query: 296 D 296
           +
Sbjct: 296 E 296


>gi|150397550|ref|YP_001328017.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029065|gb|ABR61182.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 298

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 125/291 (42%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ ++R F  VAR  SFT AA +L +++S++S  +  LE  +GI+L  R  R +  T  G
Sbjct: 5   EFSEMRAFLEVARERSFTRAAAKLGVTRSALSHTVRALEERLGIRLLSRTTRDVAPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       +  +      +     KP+G +RI    D    + +  L  FL  YPDI+
Sbjct: 65  ERLVECIEPHFESIAAEISAISALRDKPAGHIRIVCPDDAIGMVFRPRLPAFLRDYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI DN   +I     D  +RL + I    +  R    +      +P Y      P S 
Sbjct: 125 VELIADNGFTNIVERQFDAGVRLGEAIARDMVAVRIGPDVRYAVVGSPDYFGRHSTPSSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           QEL  H  I     +P     + W    D      R+   L +N+    +   + G G+A
Sbjct: 185 QELTNHKCINL--RLPTLGAIYAWEFNKDAHEFSVRVDGQLTLNNIEPALDAALDGIGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P  +V+   ++  L  ++ D   P+F  Y  Y  + +N     AF  F+
Sbjct: 243 YAPKDLVQPYLESGQLQEVLAD-WCPTFQGYHLYYPSRRNPS--PAFSAFV 290


>gi|15838353|ref|NP_299041.1| LysR family transcriptional regulator [Xylella fastidiosa 9a5c]
 gi|9106824|gb|AAF84561.1|AE003998_3 transcriptional regulator (LysR family) [Xylella fastidiosa 9a5c]
          Length = 324

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 123/278 (44%), Gaps = 19/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  +AR GSFT AA  L ++QS++S+ I+GLE  + I+L  R  R ++ T  G +
Sbjct: 7   NDLLYFVTIAREGSFTRAAAHLGVTQSALSQAINGLEARLQIRLLTRTTRSVSPTAAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       + ++E+   EL E   KP+G +RI     + +  +   L   L  YPDI I+
Sbjct: 67  LLNAIGHRFDEIESELDELTELRDKPAGTVRITCGDHILRTTILPKLTPLLREYPDINIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++    DI  D  D  +R+   I    +       + M   A+P Y  +   P    +
Sbjct: 127 FDVNYGFRDIVADRFDAGVRMGDTIDKDMIAVPIGPPLRMAIAASPEYFASHPVPKKPHD 186

Query: 186 LDKHNLITF------GDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L  HN I        G  +   M     L   VD          L  N+  +++   ++G
Sbjct: 187 LLNHNCINMRMQTSGGIYVWDFMRRGKQLNVRVD--------GQLIFNTTPNMVDAALVG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            GIA LP+       +   L+R++ED   P F+ YF Y
Sbjct: 239 LGIAALPEEEFAPHIEEGRLMRVLEDWCEP-FSGYFLY 275


>gi|5916087|gb|AAD55884.1|AF130250_1 hypothetical protein [Cupriavidus necator]
          Length = 249

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 15/252 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR+GSF+  A +     SS++RQI  LE E+G+ LF R  R L  TE G  
Sbjct: 8   ENLATFVDVARAGSFSAVARRKGQVASSVARQIDALEREMGVALFTRSTRALVRTEAGDL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +  +L  T+  +       SG+LR+A      +  +  +L      YP + ++
Sbjct: 68  LFERATRILQELNETRDAVTALEQGVSGRLRVACLPAFARRHVVPHLGSLYAQYPGLTVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D  ++  D  IR+ +    SSLI R++ +      A P YL+    PL  +E
Sbjct: 128 LELTDRVVDPVLERFDVVIRVGQQ-ADSSLIARRIASQRYIVCATPAYLQAHGRPLHAEE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNS-YLSIMQYCVLGSG 240
           L  H LI         M  +     V RP         + C   ++  LS++Q    G G
Sbjct: 187 LAHHRLIDRAH--STSMRGWR---EVLRPAHAASAAFAMECDDCDARRLSVLQ----GLG 237

Query: 241 IALLPDYIVKDN 252
           IAL+PD+ V ++
Sbjct: 238 IALMPDWSVGED 249


>gi|254174211|ref|ZP_04880873.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|160695257|gb|EDP85227.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
          Length = 336

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 66  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL     P + ++L
Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLCAHGVPRTPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLVR++         VY  YP            R FI  K R W
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286


>gi|83720712|ref|YP_443139.1| transcriptional regulator [Burkholderia thailandensis E264]
 gi|167582148|ref|ZP_02375022.1| transcriptional regulator [Burkholderia thailandensis TXDOH]
 gi|167620306|ref|ZP_02388937.1| transcriptional regulator [Burkholderia thailandensis Bt4]
 gi|257139369|ref|ZP_05587631.1| transcriptional regulator [Burkholderia thailandensis E264]
 gi|83654537|gb|ABC38600.1| transcriptional regulator [Burkholderia thailandensis E264]
          Length = 313

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP++Q+ L
Sbjct: 66  LQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPEVQVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++    P   Q+L
Sbjct: 126 TLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIETHGAPQRPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             H  +  G + P    D  W   +  P GE  ++      +VN   ++      G GI 
Sbjct: 186 AGH--VCLGMVAPGLYWD-EW--KLMGPHGEESVTLAPPPFRVNVAEALAAGIREGMGIG 240

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y       + + VR+M +  +    +Y  Y           A R ++  K R W
Sbjct: 241 VLPLYSAIAGLRHGDFVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287


>gi|107023597|ref|YP_621924.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690681|ref|YP_836304.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893786|gb|ABF76951.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648770|gb|ABK09411.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 295

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 137/274 (50%), Gaps = 14/274 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R +  +E  +G +L  R  R L+LT+ G   H
Sbjct: 7   MRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAG---H 63

Query: 68  RVTSEVYHKL-ETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +++ H + E  ++E   +S+  +P G L+IA  +  G ++L   +  F + +P I  
Sbjct: 64  LYLAQIRHVIDEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  D  + L + I +++L++R L  +     AAP Y +    P   Q
Sbjct: 124 EVTIVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLRQLVCAAPQYAERHGTPAHPQ 183

Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  + F  D + + +  F+   T  R    P  S    N  L I  + + G GIA+
Sbjct: 184 DLASHACLAFHADFMGEYLS-FDHDQT--RITVRPNKSASSNNVGL-IRNWALSGMGIAV 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           LPD++VK   D+  L+ ++      +  +   YP
Sbjct: 240 LPDFLVKSDLDDGRLLALLPGYRLEALEMNVAYP 273


>gi|323975077|gb|EGB70186.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
          Length = 299

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   +
Sbjct: 7   MQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   L       Q+ +   SGKLRI     + ++LL   L EFL  +P I+++L 
Sbjct: 67  QRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPGIELELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +DI  D  DC IR    +    +I   L  + M   A+PHYL     P S  +L 
Sbjct: 127 SHDRPVDILHDGFDCVIR-TGALSEDGVIACPLGKLTMVNCASPHYLTRFGYPQSPNDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P  
Sbjct: 186 SHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRI 244

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            V++     R++E  + P +     ++   YP+  + + ++  F  ++
Sbjct: 245 AVREALRAGRLIE--VLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|320183887|gb|EFW58715.1| Putative transcriptional regulator LYSR-type [Shigella flexneri CDC
           796-83]
          Length = 196

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 1/183 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLS 179

Query: 188 KHN 190
            H+
Sbjct: 180 SHS 182


>gi|295700883|ref|YP_003608776.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440096|gb|ADG19265.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 304

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 140/289 (48%), Gaps = 13/289 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  +G+F  A+E + +S   +SR I+ LE  + I+LF R  R ++LT++G + +  
Sbjct: 14  VFAAVVDAGTFAAASEVIGMSPPGVSRAIARLEKRLKIRLFNRTTRSVSLTDEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE   +     +    GKLR+       + +L   L +F+  +P+++I+ I  
Sbjct: 74  VMPHLAGLEEAAVAAAGGASAVRGKLRVNLDPVCYRAILGQRLDQFMDAHPELEIEFIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187
           +   D+ ++  D A+R  +P ++S+L+ RKL+   +   AAP Y+     P   ++L+  
Sbjct: 134 DHLGDLVLEGFDLALRFGEP-RTSTLVARKLLDTAVVTVAAPSYIARRGRPAKPEDLEGP 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIALL- 244
            H  + F +   +  + F W     R   +  PR   L VN   +++  C+ GSGIA + 
Sbjct: 193 SHRCLEFRN--SETGKPFPWEFHRKRKHVVIAPR-GRLTVNDPGALLNACLAGSGIAQML 249

Query: 245 ---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               ++++ +   L+ +  D     + +Y CYP       K +AF +F+
Sbjct: 250 LFGAEHLIAEG-RLINLFPDWPDERYPLYACYPSRHHIPAKTRAFLDFV 297


>gi|260466907|ref|ZP_05813090.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029303|gb|EEW30596.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 309

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 133/283 (46%), Gaps = 20/283 (7%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LHRVTSEVYHKL 77
           SFT AA ++    + +SR++  LE  +G++L +R  R ++LTE G++ L RV + +    
Sbjct: 24  SFTRAAARVGRDATILSRRLQSLEERLGVRLLHRTTRSVSLTEAGAEFLVRVRAILASVD 83

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E        +   P G LR+A     G+  +   L +FL  +PD++I+    N+  D+  
Sbjct: 84  EAEAAASAHAGGGPRGLLRLALPGTFGRMWIGPLLPQFLADFPDVRIEAEFSNRFADLVA 143

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           +  D A+RL   ++ S L+ RK+ T      AAP YL     P + Q L +H+ + F   
Sbjct: 144 ENFDVAVRL-GALEDSRLVARKVATRRRLLCAAPTYLARSGTPETPQALLEHSCLGF--- 199

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGIALLPDYIVK- 250
                + F      +R   E R   ++V+  L       +++  V G G+ +  D++V  
Sbjct: 200 --SGFQTFPAWEMTNR---EGRRVRVEVSGPLVSDDAEVLVEAAVQGVGLMMSTDWLVGR 254

Query: 251 --DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  LV ++ED  +     VY   P A     K +AF ++I
Sbjct: 255 ELADGRLVPVLEDWTLADEGAVYVVMPSAKGQAAKTRAFADWI 297


>gi|222106519|ref|YP_002547310.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221737698|gb|ACM38594.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 303

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 137/303 (45%), Gaps = 25/303 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT AAE+L + +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRAFIRVVETGNFTRAAERLDMPKATVTNLIQGLEAHLQTKLLNRTTRRVMVTTDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +L      L  +   P G+LR+  +      ++  +L +F   +PD+ I L 
Sbjct: 67  ERAVQIVSELAELDESLSNAQSTPRGRLRVEMSGAFSDWIVVPSLCDFHQKFPDMHIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D   +  DCA+R   P    SLI R++  + M    AP Y++    P   +EL+
Sbjct: 127 VSDRMVDYLAENVDCALRAGTP-SDQSLIARRVCDVEMITCVAPRYIEKFGIPAHPRELE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISC---LQVNSYLSIMQYCVLG 238
            H+          C+  F+   +   P        E  IS    + VN   + M     G
Sbjct: 186 NHHY---------CVNYFSSNNSRKMPFTFKKDKEELEISARYIVSVNDSRTYMTCAQNG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFL 292
            GIA +P ++      +  LV+++ +       +Y  YP     + K++ F ++   + L
Sbjct: 237 LGIAPIPRFMAASLLASGELVQVLAEWRREPLPLYIVYPPNRHLSNKVRVFVDWLVKLLL 296

Query: 293 KAR 295
           +AR
Sbjct: 297 EAR 299


>gi|85717275|ref|ZP_01048230.1| transcriptional regulator, LysR family protein [Nitrobacter sp.
           Nb-311A]
 gi|85695916|gb|EAQ33819.1| transcriptional regulator, LysR family protein [Nitrobacter sp.
           Nb-311A]
          Length = 329

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 131/298 (43%), Gaps = 22/298 (7%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V  +GSFT AAE+L  S    S+ +S LE E+G++L  R  R ++ TE G     
Sbjct: 34  RMFVAVMETGSFTAAAERLGTSSGQASKLVSRLENELGVRLLSRTTRAVSPTEAGHAYFD 93

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  + +     +++ S  P G+LR+   +  G   +   L EF   +P+I++ +  
Sbjct: 94  RLRPLLEEFDNLDAAVRDKSGAPRGRLRLTVPLTFGTTEIAPGLNEFASKFPEIELDVSF 153

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++  +  D AIR+ +    SS+I RKL  + +    +  YLK   EP    +L  
Sbjct: 154 SDRMVNLVDEGFDMAIRVGR-ADDSSMIARKLCDVRIVIVGSQTYLKRRGEPKRPNDLAH 212

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--------NSYLSIMQYCVLGSG 240
            +          C+ D N+      P+   R + + V        ++  + +     G G
Sbjct: 213 FD----------CIIDTNFREPNRWPLRNARGTPIDVAVGGRLRYSNAEACLNAAEAGLG 262

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A +P +I           R+++   T  + V+  YP       K++   +F+  + R
Sbjct: 263 LACVPSFIAGKALRAGRTRRVLQAFETEPYAVHALYPHGRHLATKVRVLVDFLVERYR 320


>gi|311106765|ref|YP_003979618.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761454|gb|ADP16903.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           112 [Achromobacter xylosoxidans A8]
          Length = 298

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 136/310 (43%), Gaps = 43/310 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L ++  V  +GSFT AA+ L  +++ +S  I  LE E+G+ L  R  R L LTE G  
Sbjct: 5   NRLAMYAAVVEAGSFTAAADALGTTKAVVSFNIKQLEQELGVALLTRSTRRLALTEAGEG 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +    ET   E +      SG LR+  ++D G  ++   L  +   +P +++ 
Sbjct: 65  FYGHCARLLRDAETAVDEARSGQAALSGSLRVTASVDYGNLVVAPALAAYAREHPALRVS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               +   D+  +  D AIR+   ++ SS    ++    +   A+P  L     P +   
Sbjct: 125 YRAGSAHADLIAERLDLAIRV-GALEDSSYRATRIGQFRLWLVASPALLAQHGMPRT--- 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR---------------ISCLQVNSYLS 230
                        P+ +    WLA  +RP    R                   Q ++  +
Sbjct: 181 -------------PQALAALPWLA--NRPGRSDRWRLTDGKGREHELRVAPVAQADTASA 225

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKA 285
           ++ + V G G+A LPD+++++   L R +   + PS+T     VY  YP+    + K++ 
Sbjct: 226 LLAFAVAGCGVAALPDWLLQE--PLARGVLQRVLPSYTLPRQEVYAVYPDTRHVSAKVRR 283

Query: 286 FRNFIFLKAR 295
           F +  FL+AR
Sbjct: 284 FID--FLRAR 291


>gi|331664673|ref|ZP_08365579.1| HTH-type transcriptional activator TtdR [Escherichia coli TA143]
 gi|331058604|gb|EGI30585.1| HTH-type transcriptional activator TtdR [Escherichia coli TA143]
          Length = 310

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+    P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPRPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LVR++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|332873390|ref|ZP_08441344.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|332738453|gb|EGJ69326.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 300

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 147/300 (49%), Gaps = 20/300 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT++G +
Sbjct: 6   EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YPDI+I+
Sbjct: 66  FLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ ID+     D A R  + +  SSL  + +   H++  A+P YL     P   +E
Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCESHLYIVASPDYLALKGTPTQPEE 184

Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L++H+LI F      +  P  + D  + A           S ++ +S  ++ Q  + G G
Sbjct: 185 LEQHDLIGFTRPTYINSWPIKVGDEYFFAQ----------SKIKASSGETVRQLTIRGHG 234

Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ I KD     L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|171320681|ref|ZP_02909697.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171094084|gb|EDT39177.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 325

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L     P
Sbjct: 125 VKVHIRVTNRVIDLFEDSVDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L   +L +   +    +  + +  FN +A    P G       +PR   L     ++I +
Sbjct: 185 LVPDDLARFETLDTPSVDGRHV--FNLIA----PDGTRHLHEHDPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292


>gi|84393129|ref|ZP_00991894.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84376286|gb|EAP93169.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 294

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 127/274 (46%), Gaps = 17/274 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  VA    F+ AA+QL  S S +SRQ+S LE  VG+ L  R  R ++LTE G 
Sbjct: 4   FEGINEFVAVAECHGFSAAAKQLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTESGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++   L+    ++     + SG LR++      +N +   L EF   +P++ I
Sbjct: 64  TYYQQCRDLVIGLQQANEQVTSQQTQLSGTLRVSAAGAFAENHVAAALMEFAKDHPELTI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  + K ++      D AIR  + +  S L+ RKLV   M A A+  Y++    P   +
Sbjct: 124 EMNFNTKMVNFIEGGIDFAIRYGR-LDDSGLVARKLVDRPMAAAASQDYIEQFGTPTHPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +L  H+ I              WL   + +P+   R+    + N+  ++++ C  G G+ 
Sbjct: 183 QLKMHSCII--------ANSDQWLFEKEGKPLNAVRVHGRWRSNNSSAVLKACEEGLGVV 234

Query: 243 LLPDYIVK---DNPNLVRIMED---VITPSFTVY 270
            LP         N  LV ++E+     T S+ VY
Sbjct: 235 YLPKSSFNGGLSNGKLVPVLEEYWGAGTSSWVVY 268


>gi|298293680|ref|YP_003695619.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296930191|gb|ADH91000.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 301

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 129/298 (43%), Gaps = 14/298 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD   L    V   V   GSF  AA  L L+ S +SR I  LE  + ++L  R  R +
Sbjct: 1   MAFDGRVLAGVGVLAAVVEGGSFVRAATLLGLTASGVSRAIGRLEARLHVRLLDRTTRAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +         +E     +  S     G+LR+         +L G L  F  
Sbjct: 61  TLTDEGRRFYEEVRPHLAAMEEAAAAVSGSGGVVRGRLRVDVDPFFLPLVLAGRLGIFCD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ I+ +   +  D+  D  D AIR  +P + ++L+ RKL+   +   AAP YL   
Sbjct: 121 RHPDLAIEFVSSERLGDLVSDGIDLAIRFGEP-RHTALVSRKLIEAPILTVAAPAYLARF 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQY 234
             P    EL  H  + F D  P     + W     R   P+ E R   L   +  ++++ 
Sbjct: 180 GAPAHPSELSTHRCLQFVD--PHSGRPYPWEFVKGRQKLPV-ETR-GPLTFTNPQALLEE 235

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           C+ G+G+A +  + V        LV +        F +Y  +P       K++AF +F
Sbjct: 236 CLAGTGVAQVIGWGVGQLLKEGRLVDLFPAWHGERFPLYALHPSKKHVPAKVRAFIDF 293


>gi|254719916|ref|ZP_05181727.1| LysR family transcriptional regulator [Brucella sp. 83/13]
 gi|265984923|ref|ZP_06097658.1| transcriptional regulator [Brucella sp. 83/13]
 gi|264663515|gb|EEZ33776.1| transcriptional regulator [Brucella sp. 83/13]
          Length = 306

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  +  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H
Sbjct: 8   MEIFARIVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 68  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P +I++L 
Sbjct: 128 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E  N    V RP G      LQ NS   + +  + G GIA    +
Sbjct: 187 DHICLAPHNNDPWRLEGPNG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 240

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 241 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|148555721|ref|YP_001263303.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148500911|gb|ABQ69165.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 305

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 140/300 (46%), Gaps = 16/300 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA  GSF+ AA+ L LS++++S+ +S LE  +   LF+R +R L+LTE G
Sbjct: 6   DFEAWAIFAKVAELGSFSAAADDLALSKATVSKAVSRLEQRLAAPLFHRSSRKLSLTESG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  +  + E    P G +R+A  +  G   L+  L  F   YP++ 
Sbjct: 66  QMAQERAALLLAEGEAIEEAISERGAVPRGLVRLAAPMSFGIAHLRPILPLFHQAYPEVV 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L ++ +D+     D A+R+ + ++ S+L  R+L  + +    AP        P   
Sbjct: 126 IDLHLSDERVDLIEQGFDVALRIGQ-LEDSALKARRLFPVRLPLVGAPALFDRLGRPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           ++L ++    +  +       F   A      GE  +     ++ N+   ++   + G+G
Sbjct: 185 RDLVRYPAFAYTHVRHPGRWHFRHPAE-----GELSVEIKGPIRANNGDVLIDALLAGTG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI---FLK 293
           IA  PD++V     + +L  ++ D  + PS  ++   P       ++K   +F+   FLK
Sbjct: 240 IATAPDFLVWRALADGSLEEVLSDWTSGPSIALHLVTPPTPLRPARVKVLIDFLAAAFLK 299


>gi|16263602|ref|NP_436395.1| GstR transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|14524309|gb|AAK65807.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 301

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 134/299 (44%), Gaps = 19/299 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  +A SGS T AA +L+ S  ++SR ++ LE +VG++L +R  R   L+E G  
Sbjct: 9   EDLEAFIHIAESGSLTRAATRLNRSLQAVSRSLTSLEVDVGLQLVHRTTRHSALSEAGQA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R       ++   Q+E       PSG LR+   +  G + L   + E++  YP  ++ 
Sbjct: 69  FYRRVKPAVLEIREAQLEAAGRRTGPSGILRVGAPMLFGPDFLVPIVAEYIESYPQAEVD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D++    D  +R+   +  S+L  ++L  +    + AP Y      P    E
Sbjct: 129 LSLTDAFVDLASKGIDVVVRIAD-LPDSNLQSKRLGALRRVVFGAPSYFARNGRPEHPAE 187

Query: 186 LDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGS 239
           L +H  I  T G+          W   +D   G+ R+       + N+  +I      G 
Sbjct: 188 LRQHACIVRTIGN------RPGQWAFQID---GKRRMVGVRGSFRSNAMAAIYSAVRSGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+   P + ++   D   +  ++++       ++  + E+ +   K++AF + + ++ R
Sbjct: 239 GLGYSPLWQIRHLVDAGQVEIVLQEFEPKPVPIHALWQESTRPPAKVRAFVDLLAMRLR 297


>gi|332186152|ref|ZP_08387898.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
 gi|332013967|gb|EGI56026.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
          Length = 305

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 2/188 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F  V   GSF+ A   L L+ S+++R I  +E  +G++L  R  R LTLT +G   
Sbjct: 14  SLALFASVVEEGSFSAAGRTLGLTPSAVARAIDRIEARLGVRLLLRSTRALTLTAEGQAY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L+  + ++ +    P G+LRI+  +  G+  +   L +F   YP I I +
Sbjct: 74  LLAARRILADLDDAEQQIADQGA-PRGRLRISAALAHGRLCVVPLLGDFARAYPHILIDI 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +DI+    D AIR   P+  S L  RKL        A+P YL     P   ++L
Sbjct: 133 ALTDTLVDIAAGQVDVAIRF-GPLADSGLTARKLSEARRVIVASPDYLARAGTPRVPEDL 191

Query: 187 DKHNLITF 194
             HN + F
Sbjct: 192 HAHNCLNF 199


>gi|260363431|ref|ZP_05776278.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|308112554|gb|EFO50094.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 272

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 131/277 (47%), Gaps = 18/277 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 5   DDYIIFYHLVEQGSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGQS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  VY  + T +  +       SG ++I      G+ +L G + EF   YPDI I 
Sbjct: 65  FFVHAKAVYKAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDINID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P    E
Sbjct: 125 MELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQPIE 183

Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L KHN + +        E      D  +  TVD          L  N+  ++    +LG 
Sbjct: 184 LTKHNCLVYSYQETGAREWAFKAGDKMYQVTVD--------GNLCTNNSSALRNVALLGQ 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           G+  +P  +V ++    +L+++ ++       +Y  Y
Sbjct: 236 GVIYVPRVLVYEDLKQGSLIQLFKEETAKCLGIYAVY 272


>gi|218245164|ref|YP_002370535.1| LysR family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|257058190|ref|YP_003136078.1| LysR family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|218165642|gb|ACK64379.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 8801]
 gi|256588356|gb|ACU99242.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 8802]
          Length = 297

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 129/275 (46%), Gaps = 8/275 (2%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SF+  A +   +Q +IS+QI+ LE ++G++L  R    L+LTE+G K ++   ++   + 
Sbjct: 18  SFSAVAREQQTTQPTISKQIAALEKQLGVQLLIRSTTNLSLTEEGKKYYQYCQQILETVA 77

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
             +  L+    +  G LR+  ++  GQ  +   LK F+  YPD++I L++ +  ++I  +
Sbjct: 78  EAEASLRGKE-QAIGILRLGCSVLFGQMQIVPRLKTFISRYPDVKIDLMMADYFVNIVEE 136

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D  IR+   IQ +SLI  ++ T      A   Y +   EP + +EL  H+ I +  L 
Sbjct: 137 GLDLCIRIGN-IQDNSLISHRIGTTRRVTVATKRYFEQAGEPQTPEELVHHHCIVYTRLS 195

Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPN---L 255
                 F      D  I        Q NS ++I    +   GIA++P ++  D  N   L
Sbjct: 196 TGNEWHFQ---GKDGIIKVQVGGQFQTNSSIAIRAAVLSDLGIAVVPVWMFGDEINRGDL 252

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++ D    S  ++  Y  +     K+  F +F+
Sbjct: 253 KVVLSDYQPTSLPIHAVYRRSRFYPAKITCFIDFL 287


>gi|120611241|ref|YP_970919.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120589705|gb|ABM33145.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 303

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 3/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F   A   SFT AA  + L+ +++SR IS LE  +G++L  R  R + LTE G    
Sbjct: 13  IELFCTTAEQQSFTAAARAMGLTPAAVSRSISRLEARLGVQLLVRTTRQVRLTEAGQAYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   + E+      P+G +RI+     G   +   L  F   YP I + + 
Sbjct: 73  ERCRQAITQLIDAEREVTGQQQAPTGLVRISLPTPYGHYRVLPLLPAFRTRYPGITLDVQ 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID + +  D A+R R  +  S L+ RKL    +   A P YL     P +++ L 
Sbjct: 133 LTNRNIDFAAEGFDLAVRGRT-LPDSGLVARKLEDAELVVVATPAYLSRHGRPTTLESLQ 191

Query: 188 KHNLITFGDLIPKCMEDFNWL 208
           +H+ I F  L+P   +   WL
Sbjct: 192 EHDCIQF--LLPSTGQPTPWL 210


>gi|71277813|ref|YP_271575.1| LysR family substrate binding transcriptional regulator [Colwellia
           psychrerythraea 34H]
 gi|71143553|gb|AAZ24026.1| substrate-binding transcriptional regulator, LysR family [Colwellia
           psychrerythraea 34H]
          Length = 299

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 135/290 (46%), Gaps = 16/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F V+A  GSFT AAE L  S+S IS+Q++ LE+ +G+ L  R  R   LT QG   +
Sbjct: 10  IRTFVVLAEQGSFTKAAEALACSRSHISKQLAQLESSLGVSLLIRTTRTQHLTPQGEAFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
               +  + +      + ES+   SG +RI      + + ++   + +F++L+PDI I+L
Sbjct: 70  ERCKQSLNGISHAIDRVLESADSLSGHIRINCVGGYIAEEIIATLISDFMVLHPDINIEL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+     D   R+ + +  SSLI RKL  I ++ Y +P YL    +P   + +
Sbjct: 130 DFSSRRVDLVSGEFDFVFRMGE-LADSSLIARKLTDIKINTYVSPKYLAKNGKPNDPKGM 188

Query: 187 DKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             H  I  G L        NW    +  ++ I       L   +   ++   + G+GI  
Sbjct: 189 VHHRCIA-GSLK-------NWTFINSDNNKKIEVIVAGNLTCKNGRVMVSSAIAGNGIIR 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P+   K   +   LV + +         Y  Y +      +LKAF++++
Sbjct: 241 VPELYCKTELEQGLLVPLFDHWQVEPTPFYLVYVQDKHQPLRLKAFKDYV 290


>gi|146277433|ref|YP_001167592.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555674|gb|ABP70287.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 297

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 128/264 (48%), Gaps = 12/264 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  VAR+ S + A   L L  +++ R+++ LE  +G  LF +  +G  LTE 
Sbjct: 1   MDWDDLRIFLAVARAESLSGAGRGLRLDPATVGRRVARLEEALGAPLFAKSPQGYALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E   +  T   E  + +   SG++RI         LL   L       P +
Sbjct: 61  GQRLL-AHAERAEQAVTEAAEDLQGAAGLSGQIRIGAPDGCANYLLPQVLAAICDGNPGL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q++   +  ++S   AD AI + +P ++  L  +KL   H+H  A+  YL       +
Sbjct: 120 EVQIVALPRVFNLSKREADMAIGVSRP-EAGRLRVQKLADYHLHLAASRDYLARHPPIAT 178

Query: 183 IQELDKHNLITF-GDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++L  H ++ +  D+I  K ++    L +   P     +S +Q+N       +   G+G
Sbjct: 179 LEDLVAHRMVGYIPDMIFDKELDYLTGLGSGAVPFASNSVS-VQLN-------WLRAGAG 230

Query: 241 IALLPDYIVKDNPNLVRIMEDVIT 264
           + ++ D+ +   P LV+I+ + ++
Sbjct: 231 VGIVHDFAMPSAPELVKILPEALS 254


>gi|323168205|gb|EFZ53891.1| hypothetical protein SS53G_1518 [Shigella sonnei 53G]
 gi|323172306|gb|EFZ57943.1| hypothetical protein ECLT68_2956 [Escherichia coli LT-68]
 gi|332094921|gb|EGI99961.1| hypothetical protein SB359474_1990 [Shigella boydii 3594-74]
          Length = 257

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 3/239 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245


>gi|307730281|ref|YP_003907505.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584816|gb|ADN58214.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 328

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 25/301 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+  YP+
Sbjct: 65  AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSTILPEFMHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ +D+  D  D A+R+R  P ++++++ R L         AP  L+    P
Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSAPPENANIVVRPLWRTQQMLVGAPSLLQQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L  Q  D     T           +N +A    P G       EPR+    V + LS ++
Sbjct: 185 L--QPTDLARFATLDVPTSDGRHVYNLIA----PDGSRHVHEHEPRL----VTADLSTIR 234

Query: 234 YCVL-GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             VL G GIA LP+ +         L  +M     P+  +Y  +   +   G + A R F
Sbjct: 235 EAVLCGVGIAALPEMMYGAPLRAGQLSPVMPGWTFPAPQLYAVF---VSRQGMVPAVRAF 291

Query: 290 I 290
           +
Sbjct: 292 V 292


>gi|222081254|ref|YP_002540617.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725933|gb|ACM29022.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 313

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 127/282 (45%), Gaps = 4/282 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  VA +GSF  AA+ ++L +SS+S+ +  LE  +G KL  R  R +T+T +G   H
Sbjct: 7   IKTFVRVAEAGSFAKAADTMNLPRSSVSKLVQDLEAHLGTKLVERTTRSVTMTTEGVAYH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+     +  S   P GKLR+     L   +L  +L +F   YPDI + L 
Sbjct: 67  ERALKLLADLDDMDGTVAGSRSAPKGKLRVDIGSVLANQILIPSLSDFQSQYPDIDLMLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  D+  +  DC IR    +  SS+  RKL  +     A+P YL     P    ++ 
Sbjct: 127 VSDRPADVVSEGIDCVIR-GGSLSDSSMKARKLCELDYVICASPAYLDGLELPQRPDDIQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++++            +    +R    P  + + VN   + +   + G GI     +
Sbjct: 186 AHRIVSYFSASSGKRFPLRFQRGDERSEYLPTSAGISVNESTAHLNALLSGLGIGQSFGF 245

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + +   ++  LV ++ +    +  ++  YP       +L+AF
Sbjct: 246 LARPHFESGALVELLPEWKPDNHPLHLVYPADRFPNPRLRAF 287


>gi|170724498|ref|YP_001758524.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169809845|gb|ACA84429.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 302

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 12/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GS T AA++L +S+S +S+ +  LE     +L  R  R + LTE G +L
Sbjct: 8   RMLVFANVVEQGSLTGAADELGISRSMVSQHLKKLELRCETQLIERTTRKMALTEDGQQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +E+    +  +   Q  S +  G++ + T I  G+  +  ++ EF   +P ++I L
Sbjct: 68  YHHCAELLLLAKQAEETTQPKSTELRGRVSLLTPICFGEQFITPHIGEFRRQFPKLEINL 127

Query: 127 ILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            LD++ I+   +  D AI+   ++P  +S +   KL     +  A P Y++    PL   
Sbjct: 128 QLDDRRINRLENSVDIAIQNETQQPTDTSFI---KLGQFDEYIVATPEYVQQHGSPLHPD 184

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  ++     +P+     N           P I C   NS   I Q    G+GIA+
Sbjct: 185 MLLNHQWILQTSTHLPQSFLLENSYGDKFTIKVSPFICC---NSRHGISQMVKQGAGIAI 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP Y+V+D      L+ I+ D       VY  +P       ++KAF +FI +K +
Sbjct: 242 LPSYLVEDEIAQGELIHILPDYHLDEGGVYAIHPFDKVIPPRVKAFLDFIQIKMK 296


>gi|154245815|ref|YP_001416773.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159900|gb|ABS67116.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 310

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 122/273 (44%), Gaps = 15/273 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  +  +GS + A  ++ LS   +S+++  LE  +G +LF R  R +TLTE G   +
Sbjct: 8   LEIFARIVTAGSLSAAGREMGLSPPVVSKRVQRLEERLGARLFQRTTRKVTLTEAGQGFY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + +L   S +  G LR++     G+  +  +L+  L   P + I L 
Sbjct: 68  DRVVAILASIEEAESQLARKSSEARGLLRVSAPTSFGRLHIAPHLRPLLDANPGLTIDLE 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI  +  D A+R+   +  SSL+ R+L ++H    A P YL    EP  I +L 
Sbjct: 128 LSDSFVDIVGEGFDVAVRIAD-LDDSSLVARRLASVHRVLCATPDYLARVGEPGHISDLS 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+      P  +E        D P+     S L+ NS   + +  +   GIAL   +
Sbjct: 187 GHVLLATHGQDPWRLEG------PDGPVTLRVHSQLRTNSNEVVREAVLASVGIALRSTW 240

Query: 248 IVKDNPNLVRIMEDVITPSF------TVYFCYP 274
            V   P L      V+ P +       ++  YP
Sbjct: 241 DV--GPELRSGALKVVLPRWRASHRVGLFAVYP 271


>gi|134290919|ref|YP_001114688.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134108|gb|ABO58433.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 313

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 132/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++ VKPSG+L +  T   GQ  L   +  +   YP + ++L 
Sbjct: 67  DRCQRILGYIDEAEAEAADAQVKPSGRLHVHATTSFGQAYLVPAVVRYRQRYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S LI ++L  +H    AAP YLK    P ++++L
Sbjct: 127 LSQHIPDIIDEGYDVSLQLSTTELPDSGLISQRLGDVHSVLCAAPAYLKEHGTPRTVRDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H  +    ++        W   +D P G    E   S  QVN   ++      G GI 
Sbjct: 187 ESHACL---QIVTPIFPRDRW--HLDGPDGRETFELPTSDFQVNIAEALGAALRAGLGIG 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ +      TVY  Y        K++ F  F+
Sbjct: 242 SLPMSTAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVEFL 292


>gi|218673979|ref|ZP_03523648.1| transcriptional regulator, LysR family protein [Rhizobium etli
           GR56]
          Length = 298

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 127/295 (43%), Gaps = 17/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR GSFT A ++L ++Q+++S QI  LE  VG  LF R  R + LTE 
Sbjct: 7   FPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTET 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E +  L       ++S     G L I++T       L   L  F L +P I
Sbjct: 67  GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++    +  ID S +  D  IR         L   +L+ +      +P   ++      
Sbjct: 124 AVRFQATSDIIDFSREQIDVGIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAESAGGIKE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++L K +L   GD+  K   +   +   D   RP  +     ++ ++ +S       G 
Sbjct: 183 PRDLLKFDLFDAGDIWWKQWFEAAGVTDTDLDRRPRNQLGSQAVEADAAMS-------GH 235

Query: 240 GIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+A+L          L R+    E   +     +  YPE  +N  K+KAFRN+I 
Sbjct: 236 GVAILNPAFYAAEIALGRLYQPFELTRSDGKAYWLAYPENRRNVPKIKAFRNWIL 290


>gi|149187968|ref|ZP_01866264.1| Putative transcriptional regulator, LysR family protein [Vibrio
           shilonii AK1]
 gi|148838364|gb|EDL55305.1| Putative transcriptional regulator, LysR family protein [Vibrio
           shilonii AK1]
          Length = 293

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 131/279 (46%), Gaps = 23/279 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  SG F+ AAE L +  + +SR +S LE+++G+ L  R  R + LT++G +
Sbjct: 6   DDLEILLSVVDSGGFSAAAEVLDVQVAKVSRSVSKLESQLGVTLLNRTTRRIELTDEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E    L+ T+ E+      P G+LR+        + L   + EF   YPDI+++
Sbjct: 66  FVDGVREGLRVLQQTEEEIMARGELPKGRLRVDAASPFVLHQLVPLIAEFNREYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  + L    ++  A+P YL     P S  +
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LTDSTLHAKPLGKSLLYLVASPDYLARRGYPKSATD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSY-LSIMQYCVLGSGIAL 243
           L  H+LI F  +  K +    W      P+ G P I    V+S   ++ Q  + G+GIA 
Sbjct: 185 LSTHSLIGF--VGAKVLN--QW------PLPGNPTIRPSMVSSNGETVRQLTLAGNGIAC 234

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           +  ++VK +     I E ++ P         E L  TG+
Sbjct: 235 MSGFMVKQD-----IEEGLLVP-----LLESEKLTTTGR 263


>gi|116252479|ref|YP_768317.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257127|emb|CAK08222.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 297

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 6/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR+ SFT AA +L +SQS++S  I GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLIAFLAVARAQSFTKAAGKLGVSQSALSHTIRGLEERLGLRLLTRTTRSVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L         ++E+    L     KP+G +RI         +L   L++ L  YPDI ++
Sbjct: 67  LLVSIGPRLDEIESELAALSAFREKPAGTIRINAGEHAADAVLWPALQKLLPDYPDINVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+D    DI  +  D  +RL + +    +  R    + M    AP Y     +PL+ Q+
Sbjct: 127 IIVDYGLTDIVAERYDAGVRLGEQVAKDMIAVRIGPDMRMAVVGAPAYFDTRPKPLTPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244
           L  HN I     +P     + W    D      R+    V + +++    VL G G+A +
Sbjct: 187 LTDHNCINL--RLPTYGSVYAWEFEKDGRELRVRVEGQLVFNNIALRLNAVLAGMGLAYM 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           P+ +V+    +  LVR++ED   P    +  YP
Sbjct: 245 PENLVEAPLADGRLVRVLEDWCLPFSGYHLYYP 277


>gi|76804022|gb|ABA55965.1| LysR family transcriptional regulator [Vibrio sp. DAT722]
          Length = 305

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 131/268 (48%), Gaps = 15/268 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W  +R F  VA  GSFT AAE +  S++++S+ +S LE+ +G++L YR  R L LTE
Sbjct: 3   NLSWRGIRAFIYVAECGSFTSAAEAMGASKANVSQLVSELESSLGVQLLYRTTRQLRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G    R   E   +L+      Q+++ +  G++ + +    +G+ L+   +  F   YP
Sbjct: 63  IGDGYFRKCKEAMLQLDAAAEWAQQTTSEIKGRIHMNSVGGPIGEELIAPLVMSFQSAYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L      +D+  D  D  +R+ + +  S+LI R+L T+  H  A+P +L+   + 
Sbjct: 123 NVEVELDFSKHRVDLIEDSYDLVLRVGE-MPDSTLIARRLTTLRTHYVASPDFLERHPKI 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL----------ATVDRPIGEPRISCLQVNSYLS 230
           L  ++L    LI  G +    M++ N            A   R +    +S L V     
Sbjct: 182 LIPEDLKALPLI-HGSVDHWIMKNHNEQRIINVGQGIKAATGRTMRHAAVSGLGVTRLTD 240

Query: 231 IMQYCVLGSG--IALLPDYIVKDNPNLV 256
           +  +  L SG  I +LP++  K   +LV
Sbjct: 241 VYCHADLASGRLIEVLPEWSEKTLLSLV 268


>gi|295700214|ref|YP_003608107.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439427|gb|ADG18596.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 298

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 139/293 (47%), Gaps = 24/293 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F   A + +FT  A++L LS S+I++ I+ LE  +GI+LF+R  R + LT +G  L 
Sbjct: 7   LSIFVHAAETRNFTRTAQRLGLSASAIAKSIARLEDRMGIRLFHRSTRNVMLTHEGEMLL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  +         PSG+LR+   I      +   L++F++ +P+I++ + 
Sbjct: 67  ESCRRIIEEVEMIEERFTRRGKAPSGRLRVIAQIP--SAYIAPVLRKFIVAFPEIELDME 124

Query: 128 LDNKD---IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
                   I+   D A C          S L+ + L    +    A  Y + C  P++ Q
Sbjct: 125 WGTGAAGLIESGFDVAICP----GLDTDSRLMSKHLGYSRICIAGAASYFERCGTPVTPQ 180

Query: 185 ELDKH---NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +L  H   +L   G LI        W L   +   GEP +S + V+   +++     GSG
Sbjct: 181 DLAHHVCLHLKDGGKLI-------RWPLGLGESDAGEPPVS-MAVSMLGALVNLVECGSG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP++ ++    + ++ R++ D ++ S+     +P +     K++AF +F+
Sbjct: 233 IACLPEFAIERQLKDGSMRRVLGDHVSGSYQCVAVWPSSRHMATKIRAFVDFV 285


>gi|295677632|ref|YP_003606156.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295437475|gb|ADG16645.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 317

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 1/188 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A+ GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEARLKARLFERTTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYPD+   L 
Sbjct: 67  NCCRQALQSLDDAEAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPDVTFALT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   ++  +  D AIR   P Q SSL+ R+L        A+P Y+    EP    +L 
Sbjct: 127 LSDALANLVQEDIDLAIRFGVP-QDSSLVARRLAPNRRVLCASPEYIGRRGEPKDPLDLA 185

Query: 188 KHNLITFG 195
             + I  G
Sbjct: 186 NFDCIVLG 193


>gi|270264196|ref|ZP_06192463.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041845|gb|EFA14942.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 287

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 127/280 (45%), Gaps = 15/280 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW  L+ F V+AR+GS + AA +L    +++ R+++ LE  +G++L  R  R   LT  
Sbjct: 2   FDWQDLKHFVVLARTGSLSAAARELGCDHATVGRRVAALEKALGLRLILRLPRSTPLTPD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++  + +E+ ++        + +   P  ++RI+    +   ++  ++ EF   +P I
Sbjct: 62  GQRVTGLAAEIENQSHAIARHARSAGETPQAQVRISAPPSIAARVIAPHIAEFHQAFPHI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L  +    ++    A+ A+R+ +P Q   L+QR +  +    YA P +        +
Sbjct: 122 TLILSGEASIAELDRGDAEVAVRMVRPQQPDLLVQR-IGMMRYRLYATPQHAALPEAARA 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D H    + +   +  + +       RP+        Q +   S+ +    G G  
Sbjct: 181 FIAYDHH----YSN---QPHQQWLLQLLQGRPV------VFQASDLFSLQEAARSGLGAV 227

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFC-YPEALKNTG 281
           +LP ++  D+P LV +   +  P+  ++   YP+  ++T 
Sbjct: 228 VLPTFVADDDPALVALPTSIAPPTRELWLVTYPDLARSTA 267


>gi|323494364|ref|ZP_08099476.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323311527|gb|EGA64679.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 293

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 140/306 (45%), Gaps = 39/306 (12%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWIQSVQSYIRVVDEGSFNGAARKLNTTSSAISKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++       + ++   E +  S  P+G L+I  T+ +G   L   L +FL +YPD
Sbjct: 61  AGALFYQRAKVQLDEWQSIVDETRSVSQTPAGLLKIGATLAVGSKFLVQYLDDFLQMYPD 120

Query: 122 IQIQLILDNKD--IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA---YAAPHYLKN 176
           I+IQL         ++S+D     + + + I+  + +  K   +  H    YA+P Y++ 
Sbjct: 121 IRIQLTTTTPGQLPELSLD-----LFISREIEQLNSLSFKATALFEHRAGFYASPDYIEQ 175

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQ 233
             EP   ++L  HN++ +G                +RP  E  ++  Q   +N   +   
Sbjct: 176 HGEPTIAKDLAHHNMLVWG----------------ERPQREITLTNGQKLLLNGNFATTN 219

Query: 234 YCVL------GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
              L      G G+ L  D ++K+      L RI+ D+     TVY  YP+      + K
Sbjct: 220 PEALYYAAKNGMGVLLSNDVMIKEELRLGTLKRILPDITADEATVYAYYPKLDYQHTRTK 279

Query: 285 AFRNFI 290
            F +++
Sbjct: 280 LFLDYL 285


>gi|317403959|gb|EFV84423.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 296

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 142/298 (47%), Gaps = 24/298 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKL 66
           L  F ++AR  + +  A QL L+  + +++++ LE  +G++L  R  R ++LT +G + L
Sbjct: 9   LEFFVLLARHRNLSTVARQLDLTPPAATKRLAQLEARLGVRLVNRTTRSISLTPEGETYL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H  T  +    E  ++     SV P G LRI  T+  G+  +   + EF L +P +++QL
Sbjct: 69  HYATRILADVREMEEVVSSSGSV-PKGLLRINATLGFGRTAIAPIVSEFALHHPQVEVQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ ID+     D  IR    +    L+ R++++      AAP YL     P S+++L
Sbjct: 128 DVTDRPIDLVESGVDLGIRF-GALPDQRLVARRVLSNRRFLCAAPRYLARHGTPASLRDL 186

Query: 187 DKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238
             H  I     I +  ED    W  T D      R   ++V+  LS      ++ + + G
Sbjct: 187 ADHQCI-----IHRQNEDAYGVWRFTRD-----GRAETVKVHGALSSNDGDIVLNWALDG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI +  ++ +    ++  L  ++ + I PS  ++  YP     + + +AF +F+  +
Sbjct: 237 HGILVRSEWDLAKYLESGRLRVVLPEFILPSADLFVYYPSKRDLSARTRAFIDFLMAR 294


>gi|229590782|ref|YP_002872901.1| LysR family regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229362648|emb|CAY49556.1| LysR family regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 301

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 138/295 (46%), Gaps = 19/295 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V  R  +FT A+E+LH++QS++S Q+  LE   G++LF R  + L LT  G+ L 
Sbjct: 10  LRAFEVATRHATFTSASEELHVTQSAVSHQLKHLEDLWGLQLFQR-GKSLRLTPAGAALA 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  E +  LE T  +L+E   K   +L+++ T       L   L      +P+I I L 
Sbjct: 69  PIVREFFMNLEATLSDLREQ--KGRVRLKVSATYSFALKWLLPRLPSLSQQHPEILITLE 126

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +K I  S   +D AIRL     P   S  + R+     +   A+P  L     P    
Sbjct: 127 TSDKAITFSSADSDVAIRLGNGNYPGLHSEFMLRE----QIFPVASPDLLNRFGTPQEPA 182

Query: 185 ELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL ++ L+T    DL+PK    F  +      + E   S    ++ ++I +  +LG GIA
Sbjct: 183 ELLRYPLLTRDGADLVPKWEAWFEHVGVGSCALNE---SVRFADTNMTI-EAALLGHGIA 238

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L     V+   N   LVR+ E         +F  P+ +++   + +FR+++  ++
Sbjct: 239 LARSGHVEAEINDGRLVRLFEVPFASPVAYFFVCPKGIESQPHIISFRHWLLAES 293


>gi|197103574|ref|YP_002128951.1| transcriptional regulator, LysR family [Phenylobacterium zucineum
           HLK1]
 gi|196476994|gb|ACG76522.1| transcriptional regulator, LysR family [Phenylobacterium zucineum
           HLK1]
          Length = 297

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 130/283 (45%), Gaps = 7/283 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD L+  + V  +GSF+ AA    L+Q ++ R I  LE ++G  LF R  RGL  T+  
Sbjct: 6   DWDLLQSLHAVLEAGSFSAAARLRRLTQPTLGRHIDQLERQLGAPLFLRSPRGLQATDLA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +++         +   ++    G +R+A +  +G  +L   L  F   +P I 
Sbjct: 66  LTLKPHLADMAAAAGAAGRDAAGAADHAGGVVRVAASEIMGAEVLPPILARFREAHPRID 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ + N+  D+S   AD A+R+ +P Q ++++ +K+  I    YA P YL+    P  +
Sbjct: 126 VEIAVSNRVEDLSRRDADIAVRMARPTQ-NAIVAKKVGDIGFGFYATPRYLERHGVPDDL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H LI +    P      +    + RPI    I  L+ ++ ++ +     G GI +
Sbjct: 185 DALGAHTLIGYDRSPPPKGIGVD----IGRPITR-DIFALRTDNDVAQLALLKAGFGIGV 239

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
               I +    LV ++         ++ C  EAL+   +++A 
Sbjct: 240 CQHQIGR-RAGLVHVLPGAFQFRLEIWICMHEALRGAPRMRAM 281


>gi|157963014|ref|YP_001503048.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848014|gb|ABV88513.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 297

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 10/265 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V   GSF+ AAE L+++ SS++R I  LE +    L  R  R L LTE G    
Sbjct: 5   MRIFIKVVELGSFSKAAEVLNMAPSSVARNIDSLEQDFNAVLLKRSTRQLLLTEAGELFL 64

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++ +  ET +  L +   +P G LRI+     G+  +   L +FL  YP ++I++ 
Sbjct: 65  EGARKLVNDEETLKTSLSKRDSQPEGILRISVFEGFGRVKICPILPDFLAQYPKVKIEID 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D AIR+    Q SSL  R L+       A+  YL     P   +EL 
Sbjct: 125 LDNQLVDLHSENVDIAIRIGNA-QDSSLNARMLMANQTSLCASAKYLAQFGTPKKPEELQ 183

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN +    L+ +  +   W     ++    P    L       I++  +   GI  L  
Sbjct: 184 HHNCL----LLDRDRQRTYWHFKKGNQYKKVPVQGNLTSRGGTPILEAAIHHGGIVQLSS 239

Query: 247 YIVKD---NPNLVRIMEDVITPSFT 268
           ++++D   + +LVR + D  TPS +
Sbjct: 240 WMMEDLIQDGSLVRCLPD-WTPSLS 263


>gi|16273274|ref|NP_439515.1| transcriptional regulator [Haemophilus influenzae Rd KW20]
 gi|1176210|sp|P43011|Y1364_HAEIN RecName: Full=Uncharacterized HTH-type transcriptional regulator
           HI_1364; AltName: Full=ORF2
 gi|1574196|gb|AAC23011.1| transcriptional regulator, putative [Haemophilus influenzae Rd
           KW20]
          Length = 288

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 129/273 (47%), Gaps = 9/273 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     + + +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GIA L
Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           P +I+    +   L+ I+ +       ++  YP
Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYP 272


>gi|71276035|ref|ZP_00652316.1| regulatory protein, LysR:LysR, substrate-binding [Xylella
           fastidiosa Dixon]
 gi|71899456|ref|ZP_00681614.1| regulatory protein, LysR:LysR, substrate-binding [Xylella
           fastidiosa Ann-1]
 gi|170729682|ref|YP_001775115.1| LysR family transcriptional regulator [Xylella fastidiosa M12]
 gi|71163118|gb|EAO12839.1| regulatory protein, LysR:LysR, substrate-binding [Xylella
           fastidiosa Dixon]
 gi|71730769|gb|EAO32842.1| regulatory protein, LysR:LysR, substrate-binding [Xylella
           fastidiosa Ann-1]
 gi|167964475|gb|ACA11485.1| transcriptional regulator (LysR family) [Xylella fastidiosa M12]
          Length = 301

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 132/280 (47%), Gaps = 17/280 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +++F  V  +GSF  A E+L L++S+I + I+ LE  +G++LF R  R  +LTE G +
Sbjct: 6   DGVQLFVEVVEAGSFAKAGERLSLTRSTIGKAIARLEMRLGVQLFQRTTRVQSLTEDGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +L   +  L++   + +G+L ++  +  G++ +   L+ +   +P ++++
Sbjct: 66  YYERCLRAIKELRAGEAMLEQGRREVAGRLHVSLPVLFGRHCVAPILRTYAREHPQLELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D+  D  D A+R       ++L  R+L        A+P YL    +P ++ +
Sbjct: 126 LNFSDHHVDLIADGFDLAVRNGPLGNGTTLRARRLGNQRKILCASPTYLAARGKPHTLAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWL------ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  H+L+T+     +      W       A VD P+     S L+ N    I    V G 
Sbjct: 186 LADHDLLTYW----RNDRKMAWTLPDATGALVDIPV----TSRLRCNDLEVIADTAVDGM 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           G+A LP +++ +      L+ I  D  +     +  +P A
Sbjct: 238 GVAWLPYWLLMERMQRGELIGIWGDRPSAVMECHVVWPAA 277


>gi|330819596|ref|YP_004348458.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327371591|gb|AEA62946.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 333

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 134/292 (45%), Gaps = 11/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT AA+  H++   +SR IS LET++ ++L  R  R + +TE G +
Sbjct: 5   ENMRLFVKVVETGSFTKAAQATHVATPQVSRAISSLETQLRVRLLNRTTRRIAVTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+   ++  + E   ++  PSG+LRI  +   G+  L   L  +   YP++ I 
Sbjct: 65  YVAHCREILELVDHAEAEASGAARCPSGRLRIHASSGFGRRYLLPRLARYRETYPEVTID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D+  +  D A+ +   +  S+LI  ++   +    A+P YL+    P ++ +
Sbjct: 125 LTLAQRMPDLVDEGYDLAVVVASQLDDSALIAERIGNTYSVLCASPAYLRRSGAPATVAD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNW----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H  +    ++P      +W    +A+ +      R     VN   ++      G GI
Sbjct: 185 LHDHVCLQL--MVPNASAG-SWQLEGMASSES-FTPRRQWPFVVNVADAMADALRSGMGI 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP     D   + +LVR++      S  ++  YP       K++ F +++
Sbjct: 241 GPLPLSTALDSLRDGSLVRVLPAWRLRSHGIHALYPSRRHLEAKVRTFIDYL 292


>gi|261251441|ref|ZP_05944015.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
 gi|260938314|gb|EEX94302.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
          Length = 295

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 139/302 (46%), Gaps = 23/302 (7%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++I  LE  +G +L  R  R +T TE
Sbjct: 1   MDWIQSVQSYIRVVDEGSFNGAARKLNTTSSAISKRIHWLEERIGAQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  S  P G L+I  T+ +G   L   L +FL +YPD
Sbjct: 61  AGALFYERAKVQLDGWQSIVDETRSVSETPVGLLKIGATLAVGSKFLVQYLNDFLKMYPD 120

Query: 122 IQIQLILDNKD--IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA---YAAPHYLKN 176
           I+IQLI         +S+D     + + + I+  + +  K   +  H    YA+P Y+K 
Sbjct: 121 IRIQLITTTPGQLPALSLD-----LFISREIEQLNSLSFKATPLFEHKAGFYASPDYIKQ 175

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             EP ++++L +HN++ +G+   +      ++ T  R +           +  ++     
Sbjct: 176 HGEPQNVEQLAQHNMLNWGERTQR-----EYILTNGRKLSLS--GNFATTNPEALFYAAK 228

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI L  D ++K+      L RI+  +      VY  YP+      + K F +  +LK
Sbjct: 229 SGMGILLTNDVMIKEELRVGTLKRILPSITADEALVYAYYPKLDYQHTRTKLFLD--YLK 286

Query: 294 AR 295
           AR
Sbjct: 287 AR 288


>gi|317053419|ref|YP_004119186.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953158|gb|ADU72630.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 292

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 131/287 (45%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++++  V  +GSF+ AA  L++ Q ++S+ I+ LE  + ++L  R   GLT TE G + +
Sbjct: 7   MQMYVQVVDAGSFSAAARILNIGQPAVSKTIAQLEKHLDVRLLLRTTHGLTPTEAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   + E  +I  + +    +G LR+A      +  +  +L  F+  +P++Q+ ++
Sbjct: 67  ERVRITLQQAEEAEIAARGADKGLTGILRVAAAPTFARLHVIPHLATFMAQHPELQVDIM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ ID+  +  D  +R+   +Q S  + RKL T    A A   YL     P   +EL 
Sbjct: 127 LDDRPIDLISEGIDICLRM-GTLQDSGAVARKLATSRRSALATSEYLSRYGYPQHPRELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + F  L      +  W  +    +    +   L +++   I    +   GI +  D
Sbjct: 186 QHEALIFSPL------NDTWQFSRKDEVENVSLQGRLHLSAAEGIRSAVLAHMGITVASD 239

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  +   +  + R++ D   P   ++  +P     T K + F  F+
Sbjct: 240 WMFSEEITDGTVERLVSDWTLPDIDLWAVFPGGRMATAKARQFAAFV 286


>gi|238763792|ref|ZP_04624750.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238697922|gb|EEP90681.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
          Length = 303

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 19/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F     +G F+ AAEQL LS+S++ + ++ LE  + ++LF R  R L+LT++G  
Sbjct: 8   NGIRAFVQAVDAGGFSRAAEQLGLSRSTVGKAVARLEERLSVRLFQRTTRSLSLTDEGRI 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +         L+    +L   +V PSG+LR++  +  GQ  +   L      YP ++I+
Sbjct: 68  FYADCVRALAALDAATTQLAARAVAPSGRLRVSLPVLFGQQWVLPVLLTLADKYPALEIE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +  N+ +D +    D  +R+ +   +  L  RKL         +  Y      P   QE
Sbjct: 128 ALFSNQRVDFAEAGIDLVVRIGETGDAVGLTARKLGEQQQVLCGSTAYFTAYGYPQDWQE 187

Query: 186 LDKHNLIT---FGDLIPKCMED----FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L +H  I     G   P  + D     +W++ V R         L+ ++  ++    + G
Sbjct: 188 LTEHRTIGQLQNGHNEPWRLWDNHGQIHWMSPVSR---------LRFDNLAAVATAVLAG 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            G+ALLP ++V D   +  L  I+     P   +   +
Sbjct: 239 QGVALLPRWLVGDALRSGQLQEILPGSTGPGLPINVVW 276


>gi|52426198|ref|YP_089335.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308250|gb|AAU38750.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 321

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 130/276 (47%), Gaps = 28/276 (10%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L  F   AR GSF+ AAE L L+ +++S+ ++ LE  + ++LF R  R L+LTE+G 
Sbjct: 10  FNHLISFTHAARFGSFSAAAEALDLTPAAVSKNVALLEQALNVRLFNRTTRSLSLTEEGQ 69

Query: 65  KLHRVTSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             +  + +    LE    QI L ES  + +G +RI+    +G+NL+   LK F   YP I
Sbjct: 70  VFYAESKKALALLEEAVNQITLAESQ-EIAGNVRISMPNVVGRNLVFPLLKSFNEDYPKI 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L  DNK ID      D  +R+ +  +  SL+ R +  I     A+P YLK+   P +
Sbjct: 129 HLELDFDNKAIDFVKAGFDFVLRVGESSE-GSLVARHIGMIQTCLVASPAYLKSQGVPKN 187

Query: 183 IQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------M 232
           + +L +H L+      G L P     FN             +  L    +L +       
Sbjct: 188 MADLPQHQLLMTRLPNGKLQPWT---FNEQGD--------NVHFLHAQPHLVLTDAEMQT 236

Query: 233 QYCVLGSGIALLPDYIV---KDNPNLVRIMEDVITP 265
           Q  V G GI  LP Y+      N  LV I+ D   P
Sbjct: 237 QAAVQGFGITQLPVYLALPYLQNGELVTILNDSYQP 272


>gi|298486065|ref|ZP_07004135.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298159413|gb|EFI00464.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 302

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +GSFT AA++L L+ S++S+ ++ LE+ +G++LF R  R L LTE+G+  H
Sbjct: 10  IETFVAVANAGSFTAAADRLSLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGAAYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V + +   LE  +  L     +P+G+LRI      G+      +  F   +  ++ ++ 
Sbjct: 70  AVCTRMLADLEAAETALAAQLTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRIT 129

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +DI  +  D A+R+  P +  + +  R L T  +   AAP YL+    P + ++L
Sbjct: 130 FTDRFVDILEEGIDLAVRIGGPAVWPAGVAHRYLGTERVIFCAAPAYLERHGVPTTFEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
             H  I FG           WL   D+   E R   + L + +  + +       GIA L
Sbjct: 190 ASHACILFGR---GDGSTSPWLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGIAQL 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +++++      LV I+  + T    ++  +P   ++  K++A 
Sbjct: 247 ATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQAL 291


>gi|293606407|ref|ZP_06688767.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292815267|gb|EFF74388.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 298

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 127/288 (44%), Gaps = 17/288 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +AR  SF  A E+L LS S++S  I  LE  +G+ LF R  R + LT+ G +L 
Sbjct: 9   LAAFAALARHCSFRRAGEELGLSTSAVSYAIRSLEERLGVNLFNRTTRSVALTDAGQRLA 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + L     E+       SG LRI T+      LL      FL  YPDI++++ 
Sbjct: 69  ERLLPALNDLGDALEEMNHFRGSASGTLRINTSRAASYMLLMPMAASFLAAYPDIRLEIA 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+  +DI     D  +RL + +    +  +    +     A+P Y+     P    EL 
Sbjct: 129 EDDSFVDIVASGFDAGVRLLEAVPEDMVAVQIGPALRAAVVASPDYMAGRPLPRHPDELL 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  + +    P     + W    D    E     RI+   V++ L   +  V G GI+ 
Sbjct: 189 RHECVRY--RFPSGRY-YKWEFEKDGDAIEVDVTGRIALSDVHAEL---RAAVDGIGISC 242

Query: 244 LPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           +P++  +D   +  LVR+++D     P F +Y  YP   + +  L+AF
Sbjct: 243 VPEHYARDGLQSGRLVRMLDDWCPTIPGFMLY--YPRQRRVSSALRAF 288


>gi|289672745|ref|ZP_06493635.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
          Length = 304

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 13/273 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   AR+GSFT AA++L +++S++ + I+ LE  +G KLF+R  R L LT  G      
Sbjct: 13  IFVTAARAGSFTSAADRLGITKSAVGKSIAKLEERLGCKLFHRSTRSLGLTVDGEAYFAS 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S    ++   +  L  +   P G+LRI      G++++   L + L   P +++ +  +
Sbjct: 73  CSLAVDEVLAAEAFLTSNQKTPGGRLRIDLPAAYGRSVVLPVLLDILEANPGLKLTVTFN 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID+  +  D +IR      +S L+ R+L        AAP Y++    P S ++L +H
Sbjct: 133 DSVIDLIEEGVDLSIRFGVLKDTSGLVARRLAVQKQIICAAPRYIQKHGYPESPEDLQQH 192

Query: 190 NLIT---FGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             I     G  +    +++   LA +  P         +V    +I+     G GI  +P
Sbjct: 193 RCIVNYRRGQRVSWTVLDESGELARITPP------GTHEVGDGDAIIAMAAAGQGICQMP 246

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
             +++D   +  LV ++E        ++  +P+
Sbjct: 247 GSLIRDHLKDGRLVPVLEKYHPDDVAIHAVWPQ 279


>gi|54308589|ref|YP_129609.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913018|emb|CAG19807.1| hypothetical transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 299

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 127/286 (44%), Gaps = 9/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  + +  SFT AA+ L +S++ +S+QI  LE  +G++L  R  R   LTE G      
Sbjct: 3   VFNALTKQQSFTRAAQLLDISRTQVSKQIQQLEERLGVQLVQRTTRSFALTEAGRSFSVH 62

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + V  ++   + EL   +    G LR+        N +   + EF  LYP + +++ L 
Sbjct: 63  CANVVGEINEAESELLSETDSLQGALRVGIAQSFASNHIAPFISEFHDLYPQLDLEMSLF 122

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+  +  D  I           + R L+  +    A+P YL     P    +L  H
Sbjct: 123 DYRVDLIAEQLDLWIGFMDS-PPEGFVARHLIDCNFLLAASPAYLAKHGVPYHPNDLKGH 181

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
           N IT+     +  +D  W    +    + ++    +V+S  SI    + G+GI  L  Y+
Sbjct: 182 NCITY---FSRERKDNVWSFRKEEESHQIKVKGNYRVDSADSIRDATLTGNGIGYLATYL 238

Query: 249 VKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +KD      L+R+M D  +T    +Y  YP       K++ F +FI
Sbjct: 239 LKDELQKGQLIRLMPDWDLTQYMPLYAVYPRHKYLPQKVQVFIDFI 284


>gi|148257360|ref|YP_001241945.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146409533|gb|ABQ38039.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
          Length = 307

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 116/248 (46%), Gaps = 11/248 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GS +  A +L + QS+I+R +  LE  VG+ L  R  R +TLT++GS+ +
Sbjct: 11  MRSFVRVAERGSLSAVARELGVGQSTITRHLHELEETVGVPLLSRTTRRVTLTDEGSRYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E    E + +   PSG +RI+ T   G   +   +  F   YPDI + L 
Sbjct: 71  TNCVQILRLIEQAGDEARGTRGAPSGIIRISCTAAFGILHITRLIFAFQDRYPDIAVDLN 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D A+RL  P+  SSL  R L   H    A+P YL     P + Q+L 
Sbjct: 131 LTDERIDLVRDGVDIALRL-APLSDSSLKLRSLGHSHRLLVASPDYLARRGTPRTPQDLI 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIAL 243
            H+ I   ++     E    L     P GE    P     + +  L + +  + G GI  
Sbjct: 190 GHDGIRMTNV--AGSETLVVLG----PDGERHEVPFRGSFRTDHGLGVREAVLSGRGIGG 243

Query: 244 LPDYIVKD 251
              ++V D
Sbjct: 244 SHAWLVDD 251


>gi|191165213|ref|ZP_03027057.1| LysR substrate binding domain protein [Escherichia coli B7A]
 gi|190904985|gb|EDV64690.1| LysR substrate binding domain protein [Escherichia coli B7A]
          Length = 267

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 3/239 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245


>gi|268592418|ref|ZP_06126639.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291312205|gb|EFE52658.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 298

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 10/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + L  F +VA+  SFT AA +L ++ S++S  I  LE  +GI+L  R  R +++T
Sbjct: 2   MKGKMNDLHAFLIVAQEQSFTKAAARLGVTPSALSHTIRLLEERLGIRLLARTTRNVSVT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L      ++ +++     L E    P G +R++ T D  +  ++  L  FL  YP
Sbjct: 62  EAGAQLMNAIRPLFEQIDIELNALSELRASPRGTIRLSCTDDQIEIYIRPILNNFLQKYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI I++ +D    +I  +  D  IR+   I    +  R      + A A+P Y K   +P
Sbjct: 122 DITIEIYVDYGFTNIVEERFDAGIRIGDDINKDMIAVRIGPDWRLIAVASPDYFKQHPKP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L   +L +H  I         +  + W     D          L  NS L  +   + G 
Sbjct: 182 LFPNDLSEHQCINIRHRAAGAI--YAWEFKQNDHTTSIKVDGQLVFNSTLHQLNAALDGM 239

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-----CYPEALKNTGKLKAF 286
           GIA +P+++ +  P + +     +   ++ YF      YP   +++    AF
Sbjct: 240 GIAYIPEHLAE--PYIAKGKLQAVLIDYSPYFEGFHLYYPNRRQSSPAFMAF 289


>gi|254524366|ref|ZP_05136421.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721957|gb|EED40482.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 313

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 14/300 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF     +GSFT A  ++ LS+S++ + ++ LE  +G +L  R  R L LT +G++ +
Sbjct: 12  ISVFVQAVDAGSFTAAGLRMGLSKSAVGKSVATLERRLGTRLLDRTTRRLALTVEGAEFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +V   +  +L+  +        +P+G LR++  +  GQ  +   L      +  +Q+ + 
Sbjct: 72  QVCRRILAELDEAESRAASRRQEPAGMLRVSLPVAFGQRWVMPILVALAQRHSGLQLDVS 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D A+RL    +SSSL  R L   H    AAP YL     P  + +L 
Sbjct: 132 FTDRAVDLLEENIDLAVRLGTLAESSSLSARALGHQHSVICAAPAYLAARGVPHDMADLA 191

Query: 188 KHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H+ ITF   G  +P      +      R  G  RIS  +     ++    + G GI   
Sbjct: 192 GHDCITFGRQGHALPWSTPGPDGTVVRHRIQGRHRISDGE-----ALRSALLAGLGIGEA 246

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298
             ++V +   +  LV ++    TPS  ++  +P       K++A  + +   FL    W+
Sbjct: 247 TTWLVGEELRSGELVGVISADSTPSGPIHAIWPTTRDLAPKVRAAVDALVDAFLPVPPWE 306


>gi|153838439|ref|ZP_01991106.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149748159|gb|EDM59018.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 324

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 129/297 (43%), Gaps = 15/297 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R + LTE G +  
Sbjct: 13  LRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTEAGRRYA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +L   +  L+  +   SG L+I   +  G+  ++  LKEF   YP I I + 
Sbjct: 73  NTARFVLDELAACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPSITIDIH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+  +DI     D +IR    +Q S LI R+L  I      +  YL     P      +
Sbjct: 133 YDDAYVDIIEQGIDVSIR-SGVVQDSQLIVRQLSPIDFIICGSQDYLTRHGVPSGPDAFN 191

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+ + F     G L+P  M + +  +  +     P  + + VN   S+ + C  G G+ 
Sbjct: 192 DHSWVRFRFKQTGKLLPIRMPEPDGTSEYN-----PERNFI-VNDGESMAELCAEGLGLT 245

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +P +I +D      LV I   +      VY  Y        +++ F +FI    +D
Sbjct: 246 QIPHFIARDWLKVGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFITQAIQD 302


>gi|73539649|ref|YP_300016.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122986|gb|AAZ65172.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 325

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 118/265 (44%), Gaps = 14/265 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L    V+ + GSF+ AA +L +S++S+S+ I+ LE   GI L  R  R  TLT+ G 
Sbjct: 10  WEHLHWLVVLHQQGSFSKAAARLGVSKASMSQHIADLEKAAGIMLVQRTTRSATLTDAGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L       + ++ T    +++ +  P G LR+   +   +  L   L EFL  YP IQ+
Sbjct: 70  QLVDSMRGAFEQIATGYANVRDLAGAPRGFLRVTAPVAFSRQQLVPRLPEFLRRYPQIQV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L + ++   ++ +  D A+R        + +   L        A+  YL     P S +
Sbjct: 130 ELDMSDRLRPLAQEGFDIAVR-HTSAPPETHVAWTLAATRTVLVASRSYLGTRSSPESPE 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL---------ATVDRPIGEPRISCLQVNSYLSIMQYC 235
            L  H  + +    P+      W          AT   P+  P    L VN+  ++    
Sbjct: 189 ALVDHACLHY----PRRQGTATWTFVPEAPDEGATHADPVTVPVAGPLAVNNSEALRDAA 244

Query: 236 VLGSGIALLPDYIVKDNPNLVRIME 260
           + G GIALLPD+  +      R++E
Sbjct: 245 IEGLGIALLPDFSAQSALESGRLVE 269


>gi|312173903|emb|CBX82157.1| probable RuBisCO transcriptional regulator [Erwinia amylovora ATCC
           BAA-2158]
          Length = 302

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 4/198 (2%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M    D+LR    F     SGSFT AA +LHL+ S++S+ I+ LE  +G +LF R  R L
Sbjct: 1   MPVSEDRLRGITPFVASVESGSFTAAAGRLHLTCSAVSKSIARLEARLGSRLFERTTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G   +   + V  +L   +  L      P G+LR+A     G+  +   L +F  
Sbjct: 61  VLTDAGQAFYDTCARVLGELAEAESVLAAQRSMPVGRLRVAVPHTFGRLHVMPLLNDFCQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN 176
            +P++Q+ L   ++ +D+  +  D A+R+  P     SL  R L +  +   AAP YL  
Sbjct: 121 QHPEMQLNLSFSDRFVDLFEEGIDVAVRIGGPGNYPPSLGVRYLGSERLIFCAAPDYLAQ 180

Query: 177 CREPLSIQELDKHNLITF 194
              P S+ +L++H  I +
Sbjct: 181 HGMPQSLAQLEQHKAIVY 198


>gi|262164509|ref|ZP_06032247.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|262026889|gb|EEY45556.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 299

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 18/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLENRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIVRNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L KHN + +        + +F     N++  V              ++  ++ +  + G 
Sbjct: 183 LVKHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GIA +P  +V     N  LV +  + +     +Y  YP
Sbjct: 235 GIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 272


>gi|54303303|ref|YP_133296.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46916733|emb|CAG23496.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 315

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 98/180 (54%), Gaps = 1/180 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +   V+  GSF  AA+  ++ +S +S+QI  LE  +G++L  R  R L+LT  G ++
Sbjct: 6   RLELLLEVSEHGSFAKAADARNIDRSVLSKQIKNLEDTLGLRLLNRSTRSLSLTTAGYEI 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    V  +LE T+        +P G LRI+++   G+  +Q  +K F+  +P++ ++L
Sbjct: 66  VKQAQRVRDELEQTRRLADTFHHEPKGHLRISSSTMFGRIYIQKAIKTFMNKFPEVSVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +LD++ +DI  +  D   R+  P + S+LI RKL   H    A+  ++     P + QEL
Sbjct: 126 VLDDRKVDIIGERFDVVFRIGSP-KDSNLIARKLADNHTAILASEDFVAKHGMPQTPQEL 184


>gi|256022537|ref|ZP_05436402.1| putative transcriptional regulator LYSR-type [Escherichia sp.
           4_1_40B]
 gi|301025372|ref|ZP_07188928.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|307138459|ref|ZP_07497815.1| LysR family transcriptional regulator [Escherichia coli H736]
 gi|331642408|ref|ZP_08343543.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
 gi|299880107|gb|EFI88318.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|323940535|gb|EGB36726.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|331039206|gb|EGI11426.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
          Length = 314

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 139/290 (47%), Gaps = 11/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 15  NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 75  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 135 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 193

Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L     +    +I +    F  W L   + P        L  N    + Q+C+ G GIAL
Sbjct: 194 LSALPCL----VIKERDHPFGVWQLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGIAL 249

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 250 RSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298


>gi|237801606|ref|ZP_04590067.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024466|gb|EGI04522.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 297

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 15/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  +  +GSF+ AAE+L+ + S+ISR +  LE  +G +L  R  R L++T  G   +
Sbjct: 7   IKAFRSLVEAGSFSLAAERLNTTHSTISRHLQQLEHVLGAQLVNRTTRHLSVTSAGEHYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +L+   + +  +  K  G LRI+  + +G   L   L  F   YP+I+++L 
Sbjct: 67  LACIDILDRLDQAALSVSCAGQKLGGSLRISVPMVIGTLELASWLPAFQKRYPEIRLELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+     D A+R+ + +  ++L  R L    +   A+P Y+     P +  +L 
Sbjct: 127 CSDRFVDLVAGGFDLALRIAESLTDTTLAARLLAVSEVRLVASPGYIARHGLPRTANDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RI---SCLQVNSYLSIMQYCVLGSGIAL 243
            H L+ F            WL T     G+P RI     L+ +S  ++    + GSGIA 
Sbjct: 187 HHQLLGFSG------SHAEWLLT--SATGQPERIRPAGMLRSDSIAALHAAALAGSGIAA 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             D  V+       LV I+ D        +  YP+    +  ++AF +F+
Sbjct: 239 FTDITVRQPLAQGQLVTILPDWSLGQRRYHALYPQTRYVSPWVRAFIDFM 288


>gi|218530384|ref|YP_002421200.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218522687|gb|ACK83272.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 313

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 26/300 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF VVA + SF  AA++L LS++++S+ ++ LE  +G +LF+R +R L LTE G
Sbjct: 6   DFEAWAVFAVVADALSFARAADELGLSKATVSKAVARLEGRLGARLFHRTSRRLALTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  +    +++  P G++R+A  +  G   +   L EFL  +  + 
Sbjct: 66  RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHVAPVLPEFLAAHAQVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     A P YL     P   
Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLARYGPPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGE-----PRISCLQVNSYLSIMQ 233
           ++L   +          C+  + +L T DR       GE     P    L+ N+  +++ 
Sbjct: 185 EDLKARS----------CL-GYAYLPTPDRWPFANAAGETVTIVPE-GPLRANNADALVP 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G G+A+ PD+ + ++     L R+M D   P   +    P  L    ++ A   F+
Sbjct: 233 ALRAGLGLAVQPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292


>gi|149188711|ref|ZP_01867002.1| regulatory protein, LysR [Vibrio shilonii AK1]
 gi|148837372|gb|EDL54318.1| regulatory protein, LysR [Vibrio shilonii AK1]
          Length = 296

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 136/296 (45%), Gaps = 17/296 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F      GSFT A++QL +S+S +SR I  LE  +G +L  R  + L+LT+ G   +
Sbjct: 7   MRSFISTVEEGSFTGASKQLGVSKSLVSRNIRDLENHLGTRLMNRSTKTLSLTDAGKHYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             ++ +  KL+T    ++  SV  SG L +     L + +L   + EF   YP++++ L+
Sbjct: 67  LESNILVTKLDTLNDSIRHDSVAMSGTLNVLAPNGLTEIMLMPFICEFCTRYPEVKVNLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LD+   DIS    D AIR    + Q   L+  KL        A+P YL+N    L   +L
Sbjct: 127 LDDGVNDISSQGYDVAIRSGNLVKQDLDLVATKLTENQCIVCASPQYLQNHEPILHPTDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             H ++   +L    +  F       + I E  I     + VNS  +I    +   G+A+
Sbjct: 187 LSHRVVEDPNLKNYSLWRFR------KGIEEHDIEVSPSISVNSVQAIKVALLNHFGVAM 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF----RNFIFL 292
           LP  + K    +  L+ ++      +  VY  Y E +    K+K F    R F+ L
Sbjct: 241 LPRQLAKKEIIDGKLIEVLSHYQLQNRAVYALYRERVNTPRKVKTFIEELRAFLML 296


>gi|306838503|ref|ZP_07471341.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|306406370|gb|EFM62611.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 325

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  +  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H
Sbjct: 27  MEIFARIVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 86

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 87  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 146

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P +I++L 
Sbjct: 147 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 205

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E  N    V RP G      LQ NS   + +  + G GIA    +
Sbjct: 206 DHICLAPHNNDPWRLEGPNG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 259

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 260 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306


>gi|294677103|ref|YP_003577718.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294475923|gb|ADE85311.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB
           1003]
          Length = 309

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 122/271 (45%), Gaps = 11/271 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LRVF  VAR+ S + A   L    +++ R+++ LE  VG KLF +  +G  LT +
Sbjct: 1   MDWDDLRVFLAVARAESLSGAGRGLKCDAATVGRRVARLEEAVGAKLFAKSPQGYALTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++L                EL  ++ + +G+LRI         LL     E    +P +
Sbjct: 61  GARLMPHAEAAEAAFAAATEELSGAAGQITGQLRIGAPDGCANYLLPQVCAEICDSHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQ++   +  ++S   AD AI +  P  +  L  +KLV   +H      YL+     L 
Sbjct: 121 EIQIVALPRVFNLSKREADMAIAVSPP-SAGRLTVQKLVEYQLHLAGHEAYLRRHPPILE 179

Query: 183 IQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +L  H ++ +   IP  +  ++ ++LA       E     L  NS    MQ    G+G
Sbjct: 180 RAQLKGHRIVGY---IPDMIFDKELDYLAQTGASTVE-----LASNSVSVQMQMLRAGAG 231

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271
           + ++ D+ +   P ++R++   I  S   + 
Sbjct: 232 LGIVHDFALPFTPGVLRVLPGDIALSRAFWL 262


>gi|67643828|ref|ZP_00442571.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121601579|ref|YP_992292.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|166999975|ref|ZP_02265804.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254175662|ref|ZP_04882322.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254202238|ref|ZP_04908601.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254207571|ref|ZP_04913921.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|121230389|gb|ABM52907.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|147746485|gb|EDK53562.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147751465|gb|EDK58532.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|160696706|gb|EDP86676.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|238525268|gb|EEP88696.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243064090|gb|EES46276.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 317

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 2/190 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E    +  P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHGAT-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 126 DIVLSDSLVDPLDERSDIAIR-SGALDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184

Query: 185 ELDKHNLITF 194
           +LD+HN I  
Sbjct: 185 DLDRHNCIGL 194


>gi|330890792|gb|EGH23453.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 305

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 134/292 (45%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMIVIPALPEFSRRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++  D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL++ 
Sbjct: 124 EIGMSDRPADLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASRDYLQRYGTPLNLP 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L +H +I +            ++A    VD+ +       + VNS    +  C  G G+
Sbjct: 183 DLAQHQVIEYFSTSTGKRYGLEFMAGGVEVDQALA----CSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V        LV ++     P   +   YP   + + +++ F +++
Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWL 290


>gi|330874856|gb|EGH09005.1| Transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 315

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 36/300 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F   A+S SF     ++ +S S++S+ IS LE  VG++LF R  R + LT +G    
Sbjct: 7   LEIFVETAQSQSFVATGRKMGISASAVSKSISRLEVRVGVRLFQRSTRTVRLTSEGEVFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  Q +L   +  P G+L++   +  G  L    +  F+  YPDI++ L 
Sbjct: 67  ERCRRILSEIQAAQDDLSAMTASPRGRLKVGLALAAGLPL--PVISGFMERYPDIELDLD 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  IR    +Q S L+ R L        A+P YL+    P+   +L 
Sbjct: 125 FTDRLVDVIDEGFDVVIR-GSDLQDSRLMSRPLGPYRSCLVASPAYLEKRGTPVKPADLL 183

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV------ 236
            H+ + +     G L       + W      P  +  +  LQ  + L +   C       
Sbjct: 184 NHSCLHYRWQNSGKL-------YQW------PFKKSML--LQPGTSLPVTMVCSNVEALI 228

Query: 237 ----LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                G GI  +PD+ V++   +  L +++ + +  S T +  +P + +   K++AF +F
Sbjct: 229 YLAQAGRGITCVPDFAVEEHVADGRLEKVLSNCLMGSSTFHVVWPSSRQMAPKVRAFVDF 288


>gi|182678742|ref|YP_001832888.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634625|gb|ACB95399.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 297

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 118/273 (43%), Gaps = 10/273 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   SFT AA +L  SQS++S  I  LE  +G++L  R  R +  TE G +L 
Sbjct: 9   LNAFMTVAEEQSFTRAAAKLGTSQSALSHTIRRLEMRLGVRLLTRTTRSVAPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    +      L E   KP+G +RI T+       L   L++ L  YPDI ++L 
Sbjct: 69  GTLRPALDSIGAQLTSLGELREKPAGTIRITTSEHAADTTLWPALEKLLPAYPDIHVELS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD+   DI  +  D  +RL + +    +  R    + M    +P Y +    P + Q L 
Sbjct: 129 LDSGFADIVTERFDAGVRLGEALAKDMIATRIGPDLRMAVVGSPAYFQTRPIPQTPQSLA 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA-L 243
            H  I    L    +  + W   +++   E R+     L  N+   I++    G G+  +
Sbjct: 189 DHQCINLRMLSSGGL--YAW--ELEKDGRELRVRVEGQLAFNNVNMIVRAATAGFGLGFV 244

Query: 244 LPDYIVK--DNPNLVRIMEDVITPSFTVYFCYP 274
           + D +     +  L+R++ED   P    +  YP
Sbjct: 245 MEDQVTAHLADGRLIRVLEDWCPPFPGYHLYYP 277


>gi|73541313|ref|YP_295833.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72118726|gb|AAZ60989.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 303

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 139/298 (46%), Gaps = 25/298 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ AAE L + +++++  I  LE  +G++L  R  R + +T  G 
Sbjct: 4   FQEMQVFVRIADRRSFSLAAEDLQIPRATVTNLIKRLEQRLGVRLLERTTRQVRMTHDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +   +++   P G LR+     L ++ +   L EFL  YPDI +
Sbjct: 64  AYYHRCLRLLTDLEEAENSFRDAP--PKGLLRVNLQGTLARHFVMPALGEFLAQYPDITL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SSLI R++  +     A+P YL+    P ++ 
Sbjct: 122 HVGEDDRLVDLVREGVDCVLRA-GVLQDSSLIGRQIALLEQVTVASPAYLERHGVPNTLD 180

Query: 185 ELDKH---NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYC 235
           +L  H   N ++     P  ++ +    TVD          LQ+ S +S+          
Sbjct: 181 DLKHHYAVNYVSSATGRPSALDFYVGEETVD----------LQLTSKISVTGADLYTGAA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G G+  +P Y ++    +  L  ++ D   P   V   YP+  + + +++ F  ++
Sbjct: 231 ISGLGLVQVPRYRIEKELADGRLRIVLPDSPPPRMPVSVLYPQNRQLSARVRVFSQWL 288


>gi|330969985|gb|EGH70051.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 294

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 11/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  +ISR+++ LE ++G++L +R  R  +LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSASLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H  ET +  L+  +   SG LR+      GQ ++   L   +   P + I L 
Sbjct: 66  PHAKTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQDNPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL    +P  + EL 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLARHGQPSVLDELR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  IT        M  + ++     P+          NS  ++   C  G G+A+L  +
Sbjct: 185 QHPCITL-----HAMPYWPFIRE-GEPVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYW 238

Query: 248 IVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286
            V+      +L +I  EDVI    +V    P   +   +++ F
Sbjct: 239 DVQQEIREGSLQQINFEDVIPEQLSVTAVLPTRQRVPHRVRLF 281


>gi|323978019|gb|EGB73105.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
          Length = 307

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFASVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQYGTPKHLTD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 187 LSA---------LP-CLV----IKERDHPFGIWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|304398706|ref|ZP_07380577.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304353653|gb|EFM18029.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 298

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 127/297 (42%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L+ F  VAR GSFT AA  L ++Q ++S+ I+ LE  + I+L  R  R ++ T
Sbjct: 1   MKRNMNDLQAFITVAREGSFTRAAALLGVTQPALSQTITALENRMEIRLLTRTTRNVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L       + ++E     L     KP+G +RI     +  +LL   L   L  YP
Sbjct: 61  AAGERLILAIGNRFDEIEAELDMLTAMRDKPAGTVRITCGPHILSSLLLPKLTPLLEAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++   ++   +I  D  D  +R+   I    +       + M A AAP Y +    P
Sbjct: 121 DIRLEFDANHGLRNIVADRFDAGVRMGDTIDKDMVAMPITPPLRMAAVAAPDYFRRHAAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               +L  HN I         +  + W     + P+       L  N+   I +  V G 
Sbjct: 181 QVPHDLLHHNCINMRQATAGGL--YVWDFDGEEGPVNVRVNGQLTFNTSAHIAEAAVAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIA LP+  V +      L+R++E    P    Y  YP   +++      R  + LK
Sbjct: 239 GIAFLPEQEVAEGLEQGTLIRVLERWCQPFPGYYLYYPSRKQHSPAFNLVREALRLK 295


>gi|254510965|ref|ZP_05123032.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221534676|gb|EEE37664.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 300

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 138/300 (46%), Gaps = 15/300 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +WD LRVF  VAR G  + A   L +  +++ R+I+ LE  +   LF +  +G  LT
Sbjct: 1   MTPNWDDLRVFLAVAREGGLSAAGRVLKIDPATVGRRIARLEVALDAMLFTKSQQGYVLT 60

Query: 61  EQGSKL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
             G +L  H + +E   +  T  +     S+  SG++RI         LL     +    
Sbjct: 61  TAGQRLMDHGLQAEEAMRAATGVMSGSAKSL--SGQIRIGAPDGCANYLLPQVCAQIGDA 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            PD+ IQ++   + I++S   AD AI +  P     L+ +K+    +H  A+  YL +  
Sbjct: 119 NPDLDIQILALPRIINLSRREADMAITVSAPT-GGQLLVKKITDYRLHVVASQTYLNDHA 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              ++ +L  H +I +   IP  + D   ++L      IG  R++ L  NS    +++  
Sbjct: 178 PIRTVDDLSAHRMIGY---IPDMIFDRELDYL----NDIGVDRVA-LASNSVSVQLRHAS 229

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            G+G+ +  D+ +  +P L +I+ D ++ +   Y    +  +   +L  F   +    RD
Sbjct: 230 QGAGVCVAHDFTLPFHPGLRKIVTDQVSLTRGFYLVRHQGDQRNERLNRFAEALTRGLRD 289


>gi|148652886|ref|YP_001279979.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571970|gb|ABQ94029.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1]
          Length = 205

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 16/201 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V   GSF+ AA++L L+ S +S++I+ LE  +  +L YR  R L+LT+ G  
Sbjct: 5   DDMVLFVQVVDDGSFSKAADKLGLTNSVVSKRIARLEESLNTQLLYRTTRKLSLTDAGRT 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPS-------GKLRIATTIDLGQNLLQGNLKEFLLL 118
           L       YHK +  Q   QE+    +       G +RI   +     LL   + +F   
Sbjct: 65  L-------YHKAKIAQSAFQEAQNAVTRYGEDMKGLIRITMPVVSANLLLSDAIADFCKK 117

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YPDI ++L + N+ +D+  +  D AIR  K ++ SSLI R+L+       AAP YLK   
Sbjct: 118 YPDISVELNITNRLVDLIEEGFDLAIRTAK-LEDSSLIARRLIDSQWIICAAPKYLKQHG 176

Query: 179 EPLSIQELDKHNLITFGDLIP 199
            P +  +L  H  + F D +P
Sbjct: 177 TPKTHDDLIHHECLMF-DFLP 196


>gi|33592700|ref|NP_880344.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33572346|emb|CAE41903.1| probable LysR family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332382115|gb|AEE66962.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 295

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 6/268 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +  V+A + SFT AA++L +S+S IS ++  LE E+G+ L  R  R +  TE G+ L   
Sbjct: 1   MLAVLADTRSFTAAAQRLGVSKSLISLRMKALEQELGVSLLLRTTRSVRPTEAGALLVER 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE +  E++  +  P G+LR+   + LG+  L   L      +PDI +++ L 
Sbjct: 61  ARPALDTLEDSLGEVRNLARAPRGRLRLTAPVALGRQHLGIWLARLGQHFPDIALEVYLS 120

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +++  +  D A+R    + S + + ++L     H  A+P YL     P    EL +H
Sbjct: 121 DRFVNLRQEGYDFALRHADQV-SDAYVSKRLCATRAHLVASPAYLARHGRPAHPSELARH 179

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +          F         +    + CL VN+   + +    G GIA++PD+ +
Sbjct: 180 RCLLYRGDERSPQWSFAPRQGRGAAVHVKPVDCLSVNNSELLRESVAHGLGIAMVPDFSL 239

Query: 250 KDNPNLVRIMEDVITPSFTVYFCYPEAL 277
            D  +L     + + P +  Y  +  +L
Sbjct: 240 GDCADL-----EPVLPQWDCYAGFGRSL 262


>gi|86139200|ref|ZP_01057770.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85824044|gb|EAQ44249.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 314

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 11/252 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R LT TEQG  
Sbjct: 5   DNIRTFVRVYELGSMSAAGRDLRVSPAVTSARISQLEDYLGVRLFQRTTRNLTATEQGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   ++  + ++   +  P G L +A  + +G+ L+  ++  FL  YP I I+
Sbjct: 65  FYSGAVSVLEAVDQAEAQVMHLTDTPRGTLFVAAPLGVGRRLVAPDVPSFLADYPQINIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A  L +P  S+  I RK+        AAP Y+     P   ++
Sbjct: 125 LRLSDRTVDLTTEGLDLAFFLGQPADSNLRI-RKIAECQRVLCAAPDYISRHGAPACGED 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           L    HN +   +L      +F W+   ++  G  R +     + +    +  + + G G
Sbjct: 184 LVNGAHNCL---NLRYPGASEFQWMLQSEQ--GPKRYAVSGRYECDDGDVLTDWALAGEG 238

Query: 241 IALLPDYIVKDN 252
           IAL P + V ++
Sbjct: 239 IALKPVFEVAEH 250


>gi|295676129|ref|YP_003604653.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295435972|gb|ADG15142.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 296

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 134/304 (44%), Gaps = 37/304 (12%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++RVF  +A   SFT AA+ L + +++++  +  LE  +G +L  R  R + LT  G 
Sbjct: 4   FEEMRVFVRIAERQSFTRAADDLQIPRATVTNLMKRLEQRLGARLLERTTRTVRLTPDGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E  + E   S+V P G LR+     L ++ +   L  FL  +PDI++
Sbjct: 64  AHYQRCVRLIADME--EAEGAFSNVAPKGLLRVNVQGTLARHFVVPALPAFLERFPDIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP    
Sbjct: 122 MIGEDDRLVDLVREGIDCVLRA-GVLQDSSMVGRRVAQLQQVTVASPAYLATYGEPADPG 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---------RISCLQVNSYLSI---- 231
            L  H  + +                V    G+P         R + L + S +S+    
Sbjct: 181 ALSTHRAVNY----------------VSSATGKPLPLEFRIDGRDTALVLPSAVSVSGAE 224

Query: 232 --MQYCVLGSGIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAF 286
                 + G GI  +P Y V D     R   I+ D   P   V   YP+  + + +++ F
Sbjct: 225 LYAGAAIAGLGIVQVPRYRVDDELTAGRLRVILADYPPPPMPVSVLYPQNRQLSSRVRVF 284

Query: 287 RNFI 290
             ++
Sbjct: 285 AQWL 288


>gi|254375230|ref|ZP_04990710.1| hypothetical protein FTDG_01421 [Francisella novicida GA99-3548]
 gi|151572948|gb|EDN38602.1| hypothetical protein FTDG_01421 [Francisella novicida GA99-3548]
          Length = 298

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 140/291 (48%), Gaps = 19/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
              FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT +G  L 
Sbjct: 12  FEAFYQLVIHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71

Query: 68  RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                + ++++  + +L ES  K PSG L+I+T+    QN+L   +KE+   +  ++I++
Sbjct: 72  NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++ K  +   + AD  + +   P +   ++ RK+ T      A+P Y+     P +I +
Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--DIVARKIATTRYVLCASPAYINKNGSPSNISD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242
           L  HN I     +         L  + +    P    S +  N+ +  ++ CVL   GIA
Sbjct: 189 LANHNYIPHKSRV-------TLLVNIKKNKLNPETLPSNISANN-IEFIKACVLNDFGIA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +YIVKD   N  L+ +++D       +Y  YP+      K+K F N +
Sbjct: 241 QFHEYIVKDEIRNGQLIELLKDDFFDQQDIYIYYPKNKFVQPKVKEFVNLV 291


>gi|146311255|ref|YP_001176329.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145318131|gb|ABP60278.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 310

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 126/283 (44%), Gaps = 8/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +  SGS + AA QL  +Q+++SR++  LET +G++L  R    + LT+ G + +
Sbjct: 13  MRTFIRIVESGSLSAAARQLDTTQATVSRRLQSLETLLGVRLLLRTTHAMKLTDDGERCY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V       + E+ ++  +P G LR+      GQ  L   L +FL  YP + I+  
Sbjct: 73  HHARRVLDSWLALEDEVGQAEDEPVGILRVRAPHAFGQEQLLPPLMQFLTRYPQLSIEWK 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D   D  DCAIR+   +  ++ +   L  +      +P  L     P+   +L 
Sbjct: 133 LNDRSVDFLSDDIDCAIRVGAEVDPAT-VSVLLAEVPRSVVVSPALLAQFATPVHPDDLS 191

Query: 188 KHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               +       + +E F   +    R    PR+S    +S        ++G G+A +  
Sbjct: 192 ALPWVALSTFYHQHIELFKGGVIEPTRVAISPRLST---DSLYVARNTALMGLGVAAVSS 248

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + V+++     LV ++ D       V+  YP +     +L+ F
Sbjct: 249 WTVEEDIRQGRLVHLLPDWQPSPLPVHLVYPWSRYYPARLRRF 291


>gi|323528774|ref|YP_004230926.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385776|gb|ADX57866.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 298

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 39/295 (13%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR GSF  AA      ++++SR++S LE+ +G++LF R  RGL LT++G  L+  T
Sbjct: 9   FNLVARHGSFGEAARSTERPKATLSRRVSELESSLGLRLFERGPRGLKLTQEGRALYERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  +   +   S +P G+LRI+      Q  +   +  F L YP+I++++  ++
Sbjct: 69  GALLTELAESAAAIASGSEEPRGRLRISAPALFSQLAMGKLVATFALKYPEIRLEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQR-----KLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D+  +  D  IR+  P     LI R     +LV +     A P    +         
Sbjct: 129 RPVDMIEEGYDLVIRV-NPDPDERLIGRVFLRDRLVVVARPGLARPKGKSS--------- 178

Query: 186 LDKHNLITFGDLIPKCMEDFN-----WLATVDRPIGEPRISCLQV---NSYLSIMQYCVL 237
                       +P  +   N     W   V  P G+ RI+   V   +S + +     L
Sbjct: 179 ------------VPAVLRGGNDPIGAW--DVRGPKGKSRIAIEPVAYLSSLIMVRDTVRL 224

Query: 238 GSGIALLPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G A LP  +V  +    R+    DV  P   ++  YP     + ++ AF + I
Sbjct: 225 GVGAASLPLSLVSHDIAAGRLAHWGDVDGPEIALWALYPSRRLLSPRVSAFLDHI 279


>gi|226941083|ref|YP_002796157.1| Transcriptional regulator [Laribacter hongkongensis HLHK9]
 gi|226716010|gb|ACO75148.1| Transcriptional regulator [Laribacter hongkongensis HLHK9]
          Length = 303

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 123/278 (44%), Gaps = 15/278 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR GSFT AA  L ++QS++S+ ISGLE  +GI+L  R  R ++ T  G
Sbjct: 5   NLNDLLYFVTVAREGSFTRAASLLGITQSALSQAISGLEARLGIRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++E    EL     KP+G +RI     +  ++L   L   L  YPDI 
Sbjct: 65  ERLLDTVGYRLDEIEAGLDELTGMRDKPAGTVRITCGEHVLHSILLPRLAPLLREYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+  ++    DI  D  D  +RL   I    +       + M   A+P Y      P + 
Sbjct: 125 IEFDVNYGFRDIVADRFDAGVRLGDSIDKDMIALPISPPLRMAVVASPAYFMEHPMPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLG 238
            +L  HN I         M+    L T D       +S      L  N+   I+   V G
Sbjct: 185 SDLLGHNCINM------RMQTAGGLYTWDFGHQGQTLSVRVDGQLVFNTSPGIVDAAVAG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            GIA LP+       +   LVR++ED   P+F+ Y+ Y
Sbjct: 239 LGIANLPEEEFAPHVEAGRLVRVLED-WCPAFSGYYLY 275


>gi|213967024|ref|ZP_03395174.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301385209|ref|ZP_07233627.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059602|ref|ZP_07251143.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130150|ref|ZP_07256140.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928346|gb|EEB61891.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 305

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AA+ LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFAKAADSLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP +++
Sbjct: 64  AYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFARRYPQVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL ++
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQITCASREYLQQHGTPLQLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H +I +            ++     P  +  ++C + VNS    +  C  G G+  
Sbjct: 183 DLAHHQVIEYFSASTSKRYGLEFVGEGGAP--DHVLACSISVNSADGYVAACEAGFGLIQ 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y +     +  LV ++     P   +   YP   + + +++ F +++
Sbjct: 241 VPRYHIAGQLRSGTLVEVLRRHRPPPLALTALYPPHRQLSRRVRVFVDWL 290


>gi|331662736|ref|ZP_08363659.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
 gi|331061158|gb|EGI33122.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
          Length = 257

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 3/239 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245


>gi|299770703|ref|YP_003732729.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700791|gb|ADI91356.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 298

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 140/301 (46%), Gaps = 21/301 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++  F  V  SGSFT AAE L LS+S +S  I  LE ++   L  R+ R + LT
Sbjct: 1   MQKNLKQITSFLQVVDSGSFTKAAEILGLSRSMVSIDIKQLEKQLNTSLLIRNTRNIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++  +++      Q      +G LR ++T + GQ  +   L EF  LYP
Sbjct: 61  EIGQHFYEDFKQIQLQIDEAFERSQHLGTSITGTLRFSSTNEFGQRFILPLLPEFCRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q + ++   D+  +  D  IRL   +++SSL  RK+    ++  A P ++K+   P
Sbjct: 121 HLRLQYLFNSSLDDLVTEKLDLVIRLGN-LKNSSLKTRKIGEYPIYLVATPQFIKD--HP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGE----PRI-SCLQVNSYLSIM 232
           +        N+    D+        NW  +   +   +GE    P I S  + NS  +I 
Sbjct: 178 I-------ENISDLADVPWIGHTLLNWQDSQYILQNNLGEQYSLPFIRSQYESNSVTAIH 230

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           Q  +   G+A+ P ++V ++     L+R+  D   P  ++   YP       K +AF ++
Sbjct: 231 QMALSSLGVAICPAWLVDEDIQQNRLIRLFPDFSLPLQSIQLLYPHTSNLPAKTRAFIDY 290

Query: 290 I 290
           +
Sbjct: 291 L 291


>gi|261820152|ref|YP_003258258.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604165|gb|ACX86651.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 301

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 135/295 (45%), Gaps = 10/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +   GSF+ AAE+L L ++++S  I  LE  +G++L  R  R + +T++G   +
Sbjct: 7   MRVFVRIVELGSFSRAAERLALPRATVSNTIKQLEARLGVRLLQRTTRQVQITDEGRVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++E       +  ++P GK+R+     L + ++   L EF   YP + + L 
Sbjct: 67  ERCLQLLAEIEEIDTLFTQQKLQPVGKVRVDMPHSLAREIVVPALGEFYARYPQVTLMLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  I++  +  DC +R  +     +L  R L ++     A+  YL     P S+ EL 
Sbjct: 127 ANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQVTCASADYLARYGVPRSLDELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H ++ +  L  +      +++  D  I       LQVN   + +     G GI   P  
Sbjct: 186 RHQMVGYFSLRTEYRYPLEFMSG-DECITRMLPGVLQVNGADAYIASARAGLGIIQAPRR 244

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +    ++  LV I+ ++  P+  +Y  Y       G+  A R  +F++  D  F
Sbjct: 245 GLSSLLESGELVEILPEMPPPAMPLYVMY-----TPGRFLAPRIRVFIEWLDELF 294


>gi|77458181|ref|YP_347686.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382184|gb|ABA73697.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 291

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 132/284 (46%), Gaps = 8/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  V R  +   AA  L + Q+++ R+I+ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDARVFLAVCRESTLRGAARVLGVDQATVGRRITALEKSLGATLFLRTSEGYALTAV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +   ++ H     +  +Q    + +G +R++TT  L  + L   + +    +PD+
Sbjct: 61  GEAALKSVEKMEHSALELERRIQGLDDRLTGSVRVSTTDSLAIDFLIPAMAQLHEQHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL    + + ++   AD A+R  +P  +  LI R++    +  +A+  Y+ +   P  
Sbjct: 121 RVQLDASTQILSLAKREADIAVRNTRP-DNPDLIARRIARWPVGLFASQAYVDSHGVPAP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               + H+L+ +       ++    L  V  P+   RI    ++S L + +    G G+ 
Sbjct: 180 GSSFEGHDLVVY----EPYLQGNKDLTLVSEPMTRGRI-VAGLSSSLLVRRSIAAGLGVG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKA 285
            +P Y+  +   LVR+  +   P  + V+      L++T +++A
Sbjct: 235 EIPVYM-GERDGLVRLWPERTRPLPYEVWLVTHADLRHTARVRA 277


>gi|261251063|ref|ZP_05943637.1| regulatory protein LysR:LysR substrate-binding [Vibrio orientalis
           CIP 102891]
 gi|260937936|gb|EEX93924.1| regulatory protein LysR:LysR substrate-binding [Vibrio orientalis
           CIP 102891]
          Length = 289

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 98/187 (52%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF +AA    +S + + + +S LE  +G +L +R  R  +LTE G   +
Sbjct: 1   MKVFAYVVEHGSFRNAAHHFDISPTMVGKHVSFLEQSLGTQLIHRTTRKQSLTEAGKLYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   +   +  +     +P+G +++   +  G+ +L   + +FL  YPD+ ++LI
Sbjct: 61  QECQRIIEDIINAENLIHTLINRPTGTVKVNCPVTYGKKILAPIVADFLTEYPDLNVELI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN  ID     +D  IR+   +  SSL+ RKL    M   AAP YL    + + +++LD
Sbjct: 121 LDNNLIDPYRSDSDVIIRIGDLV-DSSLVARKLGDYEMTYCAAPSYLAKHDQLVCLEDLD 179

Query: 188 KHNLITF 194
           +H+ + F
Sbjct: 180 QHHCLGF 186


>gi|238797940|ref|ZP_04641431.1| HTH-type transcriptional activator aaeR [Yersinia mollaretii ATCC
           43969]
 gi|238718245|gb|EEQ10070.1| HTH-type transcriptional activator aaeR [Yersinia mollaretii ATCC
           43969]
          Length = 303

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LETE+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFARVVECGSFTAAARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     + L  YP + + L
Sbjct: 66  YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P      
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLLQHGTPEK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233
                       P  M +F+WL    RP     +  P     Q+        N   ++++
Sbjct: 181 ------------PSDMINFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKAGAGIAYAP 240


>gi|91782682|ref|YP_557888.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686636|gb|ABE29836.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 336

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 27/302 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 13  SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 72

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+  YP+
Sbjct: 73  AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSQILPEFMHRYPE 132

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R  P ++++++ R L         AP  L+    P
Sbjct: 133 VRVVMRVTNRVIDLFEDSVDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQNAPP 192

Query: 181 LSIQELDKHNL--ITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231
           L   +L++     +  GD        +N +A    P G       EPR+    +   ++I
Sbjct: 193 LLPADLNRFETLDVPTGD----GRHVYNLIA----PDGTRHAHEHEPRLVTADL---MTI 241

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +  + G GIA LP+ +         L  +M     P+  +Y  +   +   G + A R 
Sbjct: 242 REAVLAGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVF---VSRQGMVPAVRA 298

Query: 289 FI 290
           F+
Sbjct: 299 FV 300


>gi|89076138|ref|ZP_01162496.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89048148|gb|EAR53732.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 296

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 126/273 (46%), Gaps = 13/273 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +  F  VA S  F+ AA+QL  S S +SRQ+S LE  +G+ L  R  R + LT+ G 
Sbjct: 4   FDGIIEFVAVAESHGFSSAAKQLGCSTSHVSRQVSRLEERLGVALLARSTRQVNLTDAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + + L+     L    +  SG LR++      +  +   L  F   YPD+ I
Sbjct: 64  LYYQQCRGLVNGLQQASESLNTQQITLSGTLRVSAAGAFAEEHVAPALMAFAKSYPDLTI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +++ ++   D  D AIR    ++ S L+ RKLV   M A A+  YL    +P    
Sbjct: 124 EMDFNSRMVNFIEDGIDFAIRY-GALKDSGLVARKLVDRPMAAVASQDYLTRYGKPTHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +H+ I           + +W+   +      R+    + N+  +++  C  G GIA 
Sbjct: 183 QLKQHSCI--------IANNDHWIFEKEGNTINTRVHGRWKSNNSNAVISACEEGLGIAY 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           +P   +    D+ +L+ I++D      + +  Y
Sbjct: 235 MPKSSLAKGLDSGSLIPILQDFWGKGNSSWIVY 267


>gi|325921452|ref|ZP_08183308.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325548094|gb|EGD19092.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 323

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 141/305 (46%), Gaps = 17/305 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F     +GS    A+ L +S +++S+ I+ LE  +G++L +R  R L LTE+G+   
Sbjct: 7   IRSFVSTVDAGSIAGGAKLLGVSAAAVSQNIARLEQHLGVRLLHRTTRSLALTERGTLYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   LE  +  +      P+G+LR+A+T    +++L   L      YP ++I+L+
Sbjct: 67  EQVRQLERDLERARQSVAGPQQAPAGRLRVASTAAFARHVLAPMLPALRQRYPQLEIELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +  + +  D ++R+   ++   L+ R +  + +   AAP YL  C  P +  EL 
Sbjct: 127 CTDRAVQHAQESVDVSLRIEAQLE-DGLVARCIAQVPLVVCAAPEYLVRCGTPQTPDELK 185

Query: 188 -KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALLP 245
            +H L+    +  +C+  +N++    R   +P +    V+  + ++      G GIA L 
Sbjct: 186 YQHCLLLRYPVDGRCL-PWNFVRNGVR--FQPELGKAMVSDDIDALATMAAAGGGIARLA 242

Query: 246 DYIVKD-------NPNLV---RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-A 294
            Y+V+         P  V   R           +Y C  +    T K++AF + +  +  
Sbjct: 243 AYVVQPYLQRGQLQPLFVPETRGTTQAAPEPLRIYLCVADRRDFTPKVRAFMDHVLERLP 302

Query: 295 RDWKF 299
            +W+ 
Sbjct: 303 AEWRI 307


>gi|307294328|ref|ZP_07574172.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306880479|gb|EFN11696.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 287

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 132/285 (46%), Gaps = 8/285 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V    SFT AA+ L +S++++S+ ++ LE  +   LF R +R L LTE G +L   
Sbjct: 1   MFAAVVEHRSFTDAAKALSVSKATVSKAVTRLEQHLDTSLFSRTSRRLALTESGKRLADH 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + +  + +  +   ++ + + SG +R+   ++ G   +   + EF    P + I L L 
Sbjct: 61  AARILSEGQAAEEAARDETAELSGTVRLGAPMNFGLLRVAPLIAEFTRQNPQVDIDLHLS 120

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID+     D  IR+   +  SSL  R+L    +H  A+P YL     P    +L  H
Sbjct: 121 DARIDMVEMGLDATIRIAD-MPDSSLRARRLADAKLHTIASPAYLDERGRPAHPSDLGSH 179

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           + + + +     +  F+     +  +    RI+   VNS  +++     G GIA LPD+I
Sbjct: 180 DCLCYSNTQTPDVWRFSGPGQQNVVVQVRARIT---VNSGEAMLPALRAGVGIARLPDFI 236

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V +   +  L  I+ D   P   ++   P +     ++ A  +F+
Sbjct: 237 VGEGLASGELEEILVDWRPPPLGIHLVTPPSRLRPARVDAVLDFL 281


>gi|296162467|ref|ZP_06845258.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887280|gb|EFG67107.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 363

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 27/302 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 40  SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 99

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+  YP+
Sbjct: 100 AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSQILPEFMHRYPE 159

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R  P ++++++ R L         AP  L+    P
Sbjct: 160 VRVVMRVTNRVIDLFEDSVDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQNAPP 219

Query: 181 LSIQELDKHNL--ITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231
           L   +L++     +  GD        +N +A    P G       EPR+    +   ++I
Sbjct: 220 LLPADLNRFETLDVPTGD----GRHVYNLIA----PDGTRHAHEHEPRLVTADL---MTI 268

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +  + G GIA LP+ +         L  +M     P+  +Y  +   +   G + A R 
Sbjct: 269 REAVLAGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVF---VSRQGMVPAVRA 325

Query: 289 FI 290
           F+
Sbjct: 326 FV 327


>gi|145299672|ref|YP_001142513.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852444|gb|ABO90765.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 300

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 134/286 (46%), Gaps = 9/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V    SFT AA QL +S +  S+ +  LE  +  +L  R  R +  TE G   +
Sbjct: 7   MRTFIKVVECQSFTKAANQLGISVAMTSKLMQQLEESLSTRLLSRTTRQVNPTEAGQFYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + +  +  +LE T  +L  ++ +P G L+++  +D G   L   L  F   +PD+++++ 
Sbjct: 67  QRSQALLAELEETHSQLTRNNQQPQGTLKLSVPMDFGYLHLSPALPLFRERFPDLKLEIE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ + +  +  D A+R+   +  SSL+ + L  + +   A+P YL     P S ++L 
Sbjct: 127 YSDRRVALVEEGFDLALRIGN-LPDSSLVAKPLAMMKLEVCASPTYLARRGTPNSPEDLK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ + +    P  +          RP G      L+ N+ +++ +      GI L P +
Sbjct: 186 QHDCLIYTLTQPDWVFKQGGEQLSVRPQGP-----LRANNGVALTRAACDHQGIILQPTF 240

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IV D   +  LV ++ +       +Y  YP     +GK++ F  F+
Sbjct: 241 IVGDALRSGELVPLLPEWEKGQVGLYALYPHRRFVSGKVRCFIEFV 286


>gi|38704018|ref|NP_310535.2| transcriptional regulator LYSR-type [Escherichia coli O157:H7 str.
           Sakai]
 gi|157159337|ref|YP_001463099.1| LysR family transcriptional regulator [Escherichia coli E24377A]
 gi|170681592|ref|YP_001743447.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|189405089|ref|ZP_02813218.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|189406052|ref|ZP_02826045.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|193071305|ref|ZP_03052224.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|194439627|ref|ZP_03071699.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|208810425|ref|ZP_03252301.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|209395982|ref|YP_002270876.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217328689|ref|ZP_03444770.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|218554371|ref|YP_002387284.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|218699633|ref|YP_002407262.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|218705297|ref|YP_002412816.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|253773247|ref|YP_003036078.1| LysR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161858|ref|YP_003044966.1| putative DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|254793421|ref|YP_003078258.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|260855658|ref|YP_003229549.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O26:H11 str. 11368]
 gi|260868318|ref|YP_003234720.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O111:H- str. 11128]
 gi|293405296|ref|ZP_06649288.1| tartrate dehydrogenase/decarboxylase/D-malic enzyme regulator
           protein [Escherichia coli FVEC1412]
 gi|293410108|ref|ZP_06653684.1| conserved hypothetical protein [Escherichia coli B354]
 gi|297517045|ref|ZP_06935431.1| LysR family transcriptional regulator [Escherichia coli OP50]
 gi|298380938|ref|ZP_06990537.1| HTH-type transcriptional regulator yeaT [Escherichia coli FVEC1302]
 gi|300823145|ref|ZP_07103278.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300899037|ref|ZP_07117324.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300904662|ref|ZP_07122497.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300924864|ref|ZP_07140798.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300927876|ref|ZP_07143437.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300938857|ref|ZP_07153563.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|301305895|ref|ZP_07211978.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|301327556|ref|ZP_07220776.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|307314123|ref|ZP_07593735.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|309794175|ref|ZP_07688599.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|331663287|ref|ZP_08364197.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
 gi|331668487|ref|ZP_08369335.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331683301|ref|ZP_08383902.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
 gi|157081367|gb|ABV21075.1| transcriptional regulator, LysR family [Escherichia coli E24377A]
 gi|170519310|gb|ACB17488.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
 gi|189371986|gb|EDU90402.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|189376736|gb|EDU95152.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|192955400|gb|EDV85884.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|194421448|gb|EDX37463.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|208724941|gb|EDZ74648.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|209157382|gb|ACI34815.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217318036|gb|EEC26463.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|218361139|emb|CAQ98722.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|218369619|emb|CAR17388.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|218432394|emb|CAR13284.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|242377520|emb|CAQ32274.1| DmlR DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|253324291|gb|ACT28893.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973759|gb|ACT39430.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253977953|gb|ACT43623.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|254592821|gb|ACT72182.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|257754307|dbj|BAI25809.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O26:H11 str. 11368]
 gi|257764674|dbj|BAI36169.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O111:H- str. 11128]
 gi|284921718|emb|CBG34790.1| LysR-family transcriptional regulator [Escherichia coli 042]
 gi|291427504|gb|EFF00531.1| tartrate dehydrogenase/decarboxylase/D-malic enzyme regulator
           protein [Escherichia coli FVEC1412]
 gi|291470576|gb|EFF13060.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298278380|gb|EFI19894.1| HTH-type transcriptional regulator yeaT [Escherichia coli FVEC1302]
 gi|300357337|gb|EFJ73207.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300403412|gb|EFJ86950.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300418970|gb|EFK02281.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300456216|gb|EFK19709.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300464065|gb|EFK27558.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300524299|gb|EFK45368.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300838821|gb|EFK66581.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|300845866|gb|EFK73626.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|306906261|gb|EFN36778.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|308122080|gb|EFO59342.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|315061102|gb|ADT75429.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|315257390|gb|EFU37358.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|320188495|gb|EFW63157.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Escherichia coli O157:H7 str. EC1212]
 gi|320197978|gb|EFW72586.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Escherichia coli EC4100B]
 gi|323152960|gb|EFZ39229.1| hypothetical protein ECEPECA14_5043 [Escherichia coli EPECa14]
 gi|323175124|gb|EFZ60738.1| hypothetical protein ECLT68_0221 [Escherichia coli LT-68]
 gi|323180578|gb|EFZ66123.1| hypothetical protein ECOK1180_0567 [Escherichia coli 1180]
 gi|323186454|gb|EFZ71802.1| hypothetical protein ECOK1357_0224 [Escherichia coli 1357]
 gi|323378323|gb|ADX50591.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323948316|gb|EGB44304.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|323961853|gb|EGB57452.1| LysR substrate binding domain-containing protein [Escherichia coli
           H489]
 gi|323972694|gb|EGB67897.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
 gi|324118859|gb|EGC12748.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
 gi|326342174|gb|EGD65955.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Escherichia coli O157:H7 str. 1044]
 gi|326343724|gb|EGD67486.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Escherichia coli O157:H7 str. 1125]
 gi|331059086|gb|EGI31063.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
 gi|331063681|gb|EGI35592.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331079516|gb|EGI50713.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
 gi|332089916|gb|EGI95016.1| hypothetical protein SB521682_2027 [Shigella boydii 5216-82]
 gi|332096424|gb|EGJ01421.1| hypothetical protein SB359474_1438 [Shigella boydii 3594-74]
          Length = 307

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|311105114|ref|YP_003977967.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310759803|gb|ADP15252.1| LysR substrate binding domain protein 1 [Achromobacter xylosoxidans
           A8]
          Length = 308

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 129/296 (43%), Gaps = 21/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F V AR  SFT AA++L ++Q ++S+Q+  LE  VGI+LF R  +GL LTE G    
Sbjct: 11  LQAFEVAARHSSFTRAAQELCVTQGAVSKQVKHLEEFVGIELFLRIRQGLVLTEAGRSYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++E   +EL     +  G L +      G   L   L  F+ L PDI ++ +
Sbjct: 71  TKIQAGLGQIEAATVELIAHQGQ-GGTLNLTCMPTFGARWLIPRLTAFMRLRPDIHVEFL 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLK-NCREPLS 182
              +  D S    D A+R  + I   S    ++ R+++ +      +P  +   C  P  
Sbjct: 130 PHRQGYDFSTPELDAAVRFGEGIWPGSGADYIVGREILPV-----CSPRLIPGGCATP-- 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  + L+     +    + F       R      +   + + Y  + Q    G G+A
Sbjct: 183 -ADLLAYPLLHHTSALDGWRDWFEQAGCDTR----RSLEGARFDQYALLSQAAAAGFGVA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+P  +++D   +  L   ++  I      Y CYPE   N   L+AFR ++   +R
Sbjct: 238 LIPRCLIEDELRDGKLAVAIQLPIRARMGYYLCYPEQKANLPTLQAFRTWLMEVSR 293


>gi|170699001|ref|ZP_02890059.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136108|gb|EDT04378.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 295

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 124/250 (49%), Gaps = 13/250 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R + G+E  +G +L  R  R L+LT+ G   H
Sbjct: 7   MRLFIKVAELHSFARAATELNISNSSATRLVMGIEDRLGARLLNRTTRSLSLTDAG---H 63

Query: 68  RVTSEVYHKLETTQIELQESSV-----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              +++ H +E  +I+  E ++     +P G L+IA  +  G ++L   +  F  L+P I
Sbjct: 64  LYLAQIRHVIE--EIDRVEETIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTLHPAI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++ + ++ +D+     D  + L + I +++L+ R L  +     AAP Y++    P+ 
Sbjct: 122 VPEVTIVDRHVDLVSGGFDVGLLLSQRISTNTLVTRPLTRLKRIVCAAPRYVEAHGAPIH 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  +TF           +   T  R    P  S    N  L I  + + G GIA
Sbjct: 182 PHDLASHACLTFHADFAGEYRSSDHEPT--RVAVRPNKSASSNNIGL-IRNWALSGMGIA 238

Query: 243 LLPDYIVKDN 252
           +LPD++V+ +
Sbjct: 239 VLPDFLVESD 248


>gi|163851575|ref|YP_001639618.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|163663180|gb|ABY30547.1| LysR substrate-binding [Methylobacterium extorquens PA1]
          Length = 313

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 135/300 (45%), Gaps = 26/300 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF VVA + SF  AA++L LS++++S+ ++ LE  +G +LF+R +R L LTE G
Sbjct: 6   DFEAWAVFAVVADALSFARAADELGLSKATVSKAVARLEGRLGARLFHRTSRRLALTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  +    +++  P G++R+A  +  G   +   L EFL  +  + 
Sbjct: 66  RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHVAPVLPEFLAAHAQVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     A P YL+    P   
Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLERYGPPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGE-----PRISCLQVNSYLSIMQ 233
           ++L              C+  + +L T DR       GE     P    L+ N+  ++  
Sbjct: 185 EDLKAR----------ACL-GYAYLPTPDRWPFTNAAGETVTIVPE-GPLRANNADALAP 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G G+A+ PD+ + ++     L R+M D   P   +    P  L    ++ A   F+
Sbjct: 233 ALRAGLGLAVQPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292


>gi|193066353|ref|ZP_03047402.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|260844143|ref|YP_003221921.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O103:H2 str. 12009]
 gi|192926001|gb|EDV80646.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|257759290|dbj|BAI30787.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O103:H2 str. 12009]
 gi|323158720|gb|EFZ44734.1| hypothetical protein ECE128010_5178 [Escherichia coli E128010]
          Length = 307

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|226945600|ref|YP_002800673.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
 gi|226720527|gb|ACO79698.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
          Length = 297

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 119/274 (43%), Gaps = 8/274 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L     VAR  SFT AA QL +SQS +S  I GLE  +G++L  R  R +++TE G 
Sbjct: 6   YSELLALIAVARERSFTRAAAQLGISQSMLSHTIRGLEARLGVRLLTRTTRSVSVTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L RV +     +E+    + E S   +G +RI  T      LL   L E L  YP I++
Sbjct: 66  RLLRVVAPRLKDIESELRHVAELSETAAGTIRITATEHAIDTLLWPKLSEILPAYPKIKV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L  D    DI     D  +RL   +   S   R    +      AP Y  +   P   Q
Sbjct: 126 ELNSDYALTDIVQGRYDFGVRLGDGLTRDSSAVRIAPDLQFAIVGAPSYFASRAMPDKPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I     +P     + W     +     R+   L  N    I+   + G G+A 
Sbjct: 186 DLANHECINL--RLPTRGNLYAWELKKSQSESNVRVEGQLVFNGIYQILNAALSGFGLAY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVIT--PSFTVYFC 272
           +P+ + +   ++  L+ +M+      P + +Y+ 
Sbjct: 244 VPEDLARPHLESGRLLPVMKSWWRKFPGYHLYYS 277


>gi|312960406|ref|ZP_07774915.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311285291|gb|EFQ63863.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 310

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 88/187 (47%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  V   GSF+  A +  L+ SSISRQI  +E  +G +L YRH R +T TE G  L 
Sbjct: 12  LRLFVAVLDHGSFSEVARREGLAPSSISRQIQLMEQALGQQLLYRHTRAVTPTEAGRLLG 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    V  +LE     LQE   +PSG +RI   +  GQ  L   L E    YP +Q+ + 
Sbjct: 72  RHARVVLEQLEAASQALQEQEREPSGLVRINAPMVFGQRHLSPWLGELCRRYPKLQLDIQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D   D  D   R+   +  SS+  R          A+P YL     P    EL 
Sbjct: 132 QTDTFVDPLQDGTDLLFRI-GVLNDSSMQARIFAPQRFRIAASPAYLARHGTPRHPDELS 190

Query: 188 KHNLITF 194
           +H+ + +
Sbjct: 191 EHHCLAY 197


>gi|239831902|ref|ZP_04680231.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239824169|gb|EEQ95737.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 308

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 20/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SF+ AAE+L L+Q ++SRQI+ LE ++G  LF R +R + L++ G    
Sbjct: 15  LAAFDAVARHESFSAAAEELSLTQGAVSRQIATLEEQLGTALFDRTSRHVVLSDAGRAYL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +V       +      LQ  S      L +A     G   L   +  F+  YPDI +   
Sbjct: 75  KVVGPALASIRAA--SLQVMSQMRGTTLNLAFLPTFGTRWLIPRIPRFVAKYPDIILNFA 132

Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                 D   +  D AI + +P      S  L+   +  +   A+   H ++    P  +
Sbjct: 133 TRIGQFDFDREGLDAAIHIGQPDWPNADSVFLMDETVAPVCSPAFLQQHPVQ---APTDL 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L   N+ +     P   +  +W  ++D  I  P    ++   + ++ Q C+ G G+AL
Sbjct: 190 LPLPLFNMAS----RPGAWD--HWFKSLD--IAAPVSPGMRFEQFSNVSQACIAGLGVAL 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +P ++++   +N  LV      +    + YF  P+A  +T  + AFR+++ 
Sbjct: 242 MPLFLIRAEIENGQLVVACPHTVRSPSSYYFVTPKARSSTPAVSAFRDWLL 292


>gi|239503529|ref|ZP_04662839.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB900]
          Length = 296

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT  G K
Sbjct: 5   DCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLNRTTRQMNLTSCGEK 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP I+I 
Sbjct: 65  FYQHCKVILSEFEWATYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPSIKID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQ 184
           L + ++ +D++    D  IRL     + SL   K++ T   + YA P Y      P S++
Sbjct: 125 LFMTDQLLDVNQHKFDLTIRLDG--SAPSLANSKILNTYQRYLYATPEYFNQHGLPTSLE 182

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240
           EL +H  LI + D   K +          +   E   +C  V   N+   ++  C+   G
Sbjct: 183 ELKEHKFLIYYQDSRHKKL-------IFQKDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+
Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFL 288


>gi|229591640|ref|YP_002873759.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363506|emb|CAY50742.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
          Length = 307

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 130/279 (46%), Gaps = 5/279 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V+  GSFT AAE+++L+ S+IS+ I+ LE  +G++LF R  R L+LT+ G   +R 
Sbjct: 12  VFVCVSDHGSFTAAAEKMNLTASAISKSIARLEKRLGVRLFQRTTRRLSLTDAGVAFYRT 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + V   LE  ++ L   + +  G++RI     LG+  +   L  FL  +P +       
Sbjct: 72  CTGVLADLEEAELLLHVENTEARGRVRIDLPSALGRAQVLPVLLPFLQAHPLLLAHFTFG 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSIQELDK 188
           +  I+   +  D  +R+         + ++++    H+ YA+P YL     PLS  +L+ 
Sbjct: 132 DGFIEPFEEGVDIVVRIGGTNAWPETVGQRVLAHEWHSLYASPVYLSRHGTPLSEHDLEH 191

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  I +G  +      +N+      P        L V +   ++   + G GI  LP ++
Sbjct: 192 HQCIAYG-WVDGRTSPWNFADEQGAPRRRQITPQLVVGNGDGLLMAALAGCGIVQLPSWM 250

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           V+       LV ++  + T    +   + ++ +   K++
Sbjct: 251 VQQPLQEGTLVEVLPHLATQGAAITLGWVKSRQALPKVR 289


>gi|153832286|ref|ZP_01984953.1| LysR family transcriptional regulator [Vibrio harveyi HY01]
 gi|148871597|gb|EDL70452.1| LysR family transcriptional regulator [Vibrio harveyi HY01]
          Length = 305

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 131/268 (48%), Gaps = 15/268 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W  +R F  VA  GSFT AAE +  S++++S+ +S LE+ +G++L YR  R L LTE
Sbjct: 3   NLSWRGIRAFIYVAECGSFTSAAEAMGASKANVSQLVSELESSLGVQLLYRTTRQLRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G    R   E   +L+      Q+++ +  G++ + +    +G+ L+   +  F   YP
Sbjct: 63  IGDGYFRKCKEAMLQLDAAAEWAQQTTSEIKGRIHMNSVGGPIGEELIAPLVMSFQSAYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L      +D+  D  D  +R+ + +  S+LI R+L T+  H  A+P +L+   + 
Sbjct: 123 NVEVELDFSKHRVDLIEDSYDLVLRVGE-MPDSTLIARRLTTLRTHYVASPDFLERHPKI 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL----------ATVDRPIGEPRISCLQVNSYLS 230
           L  ++L    LI  G +    M++ N            A   R +    +S L V     
Sbjct: 182 LIPEDLKALPLI-HGSVDHWIMKNHNEQRIINVGQGIKAATGRTMRHAAVSGLGVTRLTD 240

Query: 231 IMQYCVLGSG--IALLPDYIVKDNPNLV 256
           +  +  L SG  I +LP++  K   +LV
Sbjct: 241 VYCHADLASGRLIEVLPEWSEKTLLSLV 268


>gi|148256066|ref|YP_001240651.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146408239|gb|ABQ36745.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 291

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 121/279 (43%), Gaps = 23/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA   SFT AA +L +S S++S  I  LE  + ++L  R  R +  TE G +L 
Sbjct: 4   LAMFLAVAEERSFTRAAAKLGVSPSALSHAIRRLEQRMDVRLLTRTTRSVAPTEAGERLM 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +  + +++     L E   +P+G +RI T+    + LL   +   +  YPDI+++L 
Sbjct: 64  ETVAPAFDEIDARIAALTELRSRPAGTVRITTSEHAARTLLWPAIDRIVADYPDIKVELN 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   DI  +  D  +RL + ++   +  R    + M    +P YL  C  P S  +L 
Sbjct: 124 VQSGLTDIVAERFDAGVRLGERLEQDMVAVRIGPRLRMATVGSPAYLAKCGAPKSPDDLT 183

Query: 188 KHNLITFGDLIPKCMEDFNW---------LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +H  I    ++   +  + W            VD P+         +N    I+     G
Sbjct: 184 RHACINL-RMVNGSI--YQWEYGRGGRELKVKVDGPV--------VLNDVDLIVAAASAG 232

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            G+A L D  V        LVR+++D   P    Y  YP
Sbjct: 233 HGLAHLVDDRVAPLLAKGALVRVLDDWCEPFDGYYLYYP 271


>gi|152998799|ref|YP_001364480.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|307306147|ref|ZP_07585892.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|151363417|gb|ABS06417.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
 gi|306911020|gb|EFN41447.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 307

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 134/288 (46%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SFT A+  L LS++ +S  ++  ET +G +L  R  R + LT+ G   +
Sbjct: 8   MQIFMRVAELQSFTQASVSLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLTQDGQSCY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +   Q  + + SG+LR+  +  + +NL+   L EF+  YP I+++L 
Sbjct: 68  ERCKSLLAEFQELESLFQLQAEQVSGRLRVDMSTGIARNLVLPKLAEFIEQYPHIELELS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE-- 185
             ++ +D+  +  DC IR+   +Q   LI +KL    M    +P Y+    +P S+++  
Sbjct: 128 STDRKVDVIAEGFDCVIRVGS-VQQEGLIAKKLGHFKMLNCVSPAYIAKYGKPESLEDLT 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H L+ +   +      F +        +  I  P++  + VN+  +    C+ G GI
Sbjct: 187 LQNHKLVHYVSQLGGTDSGFEYQDPHTHQGNLTIQLPKL--ITVNNADAYSSACLAGLGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +P   V        LV I+ +   P  +V   YP     + +L+ F
Sbjct: 245 IQVPSIGVAKYLHTGELVEILPNYPAPPMSVSLLYPHRRHLSKRLQVF 292


>gi|226945308|ref|YP_002800381.1| transcriptional regulator LysR family protein [Azotobacter
           vinelandii DJ]
 gi|226720235|gb|ACO79406.1| Transcriptional regulator LysR family protein [Azotobacter
           vinelandii DJ]
          Length = 297

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 128/288 (44%), Gaps = 16/288 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  V R GSFT AA  L ++ S++S  +  LE  +G++L     R L+ TE+G 
Sbjct: 6   FNDILAFVHVVREGSFTRAAALLGVTPSALSHAVRALEARLGVRLLTHTTRRLSTTEEGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L       +  ++     ++E   KP+G +RI +      ++L   L + L  YPDI +
Sbjct: 66  RLFVNVLPHFEGIDAELAAVEELRDKPAGTIRITSAEHAANSVLWPKLSKVLHEYPDINV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    DI     D  +RL   +    +  R    + +    +P Y      P +  
Sbjct: 126 EVSVDYALSDIVSQRYDAGVRLGNQVAKDMIAVRIGPDLRIAVVGSPGYFAQRPVPATPH 185

Query: 185 ELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           +L  HN I     T G L+P       W    D    + R+      N+  SI++  + G
Sbjct: 186 DLAGHNCINLRLPTHGGLLP-------WDFAKDGQEVKFRVGGQWTFNNSSSIVKAALAG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            G+A +P+ +V    D   L+R+++D   P    +  YP   +++  L
Sbjct: 239 YGLAFVPEDMVLEHIDAGRLIRVLDDWCDPYPGYHLYYPNRRQSSRAL 286


>gi|260549183|ref|ZP_05823404.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407911|gb|EEX01383.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 298

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L+ F++   VA+  SF+  A +L L +S+++  I  LET  G++LF+R  R ++LT+ 
Sbjct: 2   DRLQQFFIFTEVAKRQSFSEVAHRLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPDI
Sbjct: 62  GQRILPECQNLLLDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELSDFYHRYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL   +   D+     DC +R+ + + SSSLI R +  + M   A+  YL+    P  
Sbjct: 122 HLQLNSSDDMTDLIEKGIDCVVRVGE-LDSSSLIARFIGHLVMVNCASRGYLEQYGMPEQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           +++L +H LI +   + +   +F +        G   + S L VN+  +       G GI
Sbjct: 181 LEDLSQHKLINYVGAVGEKQGEFVYQG------GSVMMDSALSVNNTEAYSAAACAGLGI 234

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V+D      LV ++     PS  +   YP       +L+ F N++
Sbjct: 235 IQVPYYDVQDKIEQGILVEVLSAYSAPSLPLNILYPNRTYIPKRLEVFMNWV 286


>gi|240138742|ref|YP_002963214.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
 gi|240008711|gb|ACS39937.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
          Length = 320

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 26/300 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF VVA + SF  AA++L LS++++S+ ++ LE  +G +LF+R +R L LTE G
Sbjct: 6   DFEAWAVFAVVADALSFARAADELGLSKATVSKAVARLEGRLGARLFHRTSRRLALTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  +    +++  P G++R+A  +  G   +   L EFL  +  + 
Sbjct: 66  RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHVAPVLPEFLAAHAQVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     A P YL+    P   
Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLERHGPPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGE-----PRISCLQVNSYLSIMQ 233
           ++L              C+  + +L T DR       GE     P    L+ N+  +++ 
Sbjct: 185 EDLKAR----------ACL-GYAYLPTPDRWPFTNAAGETVTIVPE-GPLRANNADALVP 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G G+A+ PD+ + ++     L R+M D   P   +    P  L    ++ A   F+
Sbjct: 233 ALRAGLGLAVQPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292


>gi|152981601|ref|YP_001353561.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281678|gb|ABR90088.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 300

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 134/292 (45%), Gaps = 17/292 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VA  G+FT AA +L +SQS++S  I  LE  +G+ L  R  R ++ TE G
Sbjct: 5   DLSDLAAFATVAEEGNFTRAAARLGMSQSALSHAIKALEQRIGLPLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R        +      L + S  P G +RI T     + L+Q  L  F+  YP+I 
Sbjct: 65  ERLLRTLRPALDGITAELASLSDLSETPRGVVRITTDQIAARWLIQPVLARFVEQYPNIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  D+   +I  D  D  +RL + I+   +  R    + +   A+P YL N   PLS 
Sbjct: 125 VEVNNDDGLTNIVADRFDAGVRLGELIEQDMISVRIGPDVKVAIVASPAYLANRGLPLSP 184

Query: 184 QELDKH-----NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL- 237
           Q+L  H      L T G L       + W  T +  + E R+    + +  ++    VL 
Sbjct: 185 QDLKNHRCLNYRLATAGGL-------YAWEFTRNGRMIEVRVDGPLIFNDWTLSYAAVLE 237

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+GI    ++ V+    +  LVR+++D  +P+F  Y  Y    + T  L A 
Sbjct: 238 GAGIGYCFEHQVEQDIADGRLVRMLQD-WSPTFHGYHLYFPDRRRTPALSAL 288


>gi|153832005|ref|ZP_01984672.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148872003|gb|EDL70826.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 291

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF +AA    +S + + + +S LE  +G +L +R  R  +LTE G   +
Sbjct: 7   MKVFAYVVEHGSFRNAAHHFDISPTMVGKHVSFLEQSLGTQLIHRTTRKQSLTEAGRLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   +   +  +Q    +P+G +++   +  G+ ++   + +FL  +PD+ ++L+
Sbjct: 67  QECHRIIEDITNAENLIQTLINRPTGTVKVNCPVTYGKKVIAPIVADFLAEFPDLNVELM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN  ID     AD  IR+ + +  SSL+ RKL   HM   A+P YL+      S+++L+
Sbjct: 127 LDNNLIDPYRSEADVIIRIGELV-DSSLVARKLGEYHMTYCASPSYLEQHEPIQSLEDLE 185

Query: 188 KHNLITF 194
            H+ + F
Sbjct: 186 HHHCLGF 192


>gi|94500748|ref|ZP_01307277.1| Putative transcriptional regulator, LysR family protein
           [Oceanobacter sp. RED65]
 gi|94427070|gb|EAT12051.1| Putative transcriptional regulator, LysR family protein
           [Oceanobacter sp. RED65]
          Length = 296

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 132/296 (44%), Gaps = 25/296 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +      SGS T AA  L +  + +SR IS LE E+   L  R  R L LTE+G  
Sbjct: 8   EDLEILLATIDSGSLTGAANALDIQVARVSRAISRLEAELDCSLLNRTTRKLELTEEGRV 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    L   +  L++   +P+G LR+        + +   L EF + +P I+++
Sbjct: 68  FSERVRQALQHLSHAESTLRDLKEQPAGILRVDAVTPFMIHQIIPLLPEFRIQFPLIELE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+     ID+     D AIR+  P++ S+L  R L    +   A+  Y++    P SI E
Sbjct: 128 LVSSENIIDLIERRTDIAIRI-GPLKDSNLHARPLGRSPLSIVASHDYIERFGAPSSINE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVLGSG 240
           L  HN+I F     +     NW      PIG     EP I     N  L I   C+ G G
Sbjct: 187 LANHNIIGFA----QSPHLNNW------PIGTGINIEPDIKS--SNGEL-IRHLCLEGQG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTG---KLKAFRNFI 290
           +ALL  +++K+   N  L+ ++   +T +           KNT    ++ AF +FI
Sbjct: 234 LALLSHFMIKEDLKNNRLIEVLPGSVTQNNNRERVNAVFYKNTALSSRILAFLDFI 289


>gi|91788928|ref|YP_549880.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91698153|gb|ABE44982.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 338

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 136/307 (44%), Gaps = 11/307 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   V   GS T AA  L ++   ++++++ LE  +G +LF R  R ++ T +
Sbjct: 1   MDRSDLELVLAVREHGSLTAAALSLDVAPPVVTKRLAALEARLGQRLFQRTTRRVSATAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +      +       + ELQE   +P+G +R+A T   G+  L   L +F   YP I
Sbjct: 61  GETMCERALALLQGFTALEAELQERQSEPTGLIRLAATFGFGRLWLGPALADFQERYPRI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQL L  +  D++    D AI L   +  Q++  + R+L        A+P Y++    P
Sbjct: 121 EIQLQLTEQLPDLAEGGFDGAIWLWEVEGRQAAQWVSRRLARNQRVLVASPRYIRQHGAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC---LQVNSYLSIMQYCV 236
            S+++L +H  +   +      + F+ W    +R     R+     L  NS   +  +CV
Sbjct: 181 ASLEDLQRHTCLIVRENGNATGQRFDVWPLHKEREKTPARVRVRGPLSSNSGELVRDWCV 240

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF-- 291
            G GI L   + +     +  LVR++     P   +++  P    +  +++   +F+   
Sbjct: 241 EGRGIMLRSLWDIAPQLASGELVRVLPGYAMPDADIHWLAPFRPDSPRRIRLLVDFLLAQ 300

Query: 292 LKARDWK 298
            +   WK
Sbjct: 301 FQGAPWK 307


>gi|323968566|gb|EGB63972.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|327252920|gb|EGE64574.1| hypothetical protein ECSTEC7V_2165 [Escherichia coli STEC_7v]
          Length = 307

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQYGTPKHLTD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 187 LSA---------LP-CLV----IKERDHPFGIWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|300717146|ref|YP_003741949.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661]
 gi|299062982|emb|CAX60102.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661]
          Length = 297

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 132/293 (45%), Gaps = 13/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L    +V++  SFT AA +L +SQS++S  I GLE  +  +L  R  R +  TE G
Sbjct: 5   NFNDLIYLVMVSKEKSFTRAAAKLGVSQSALSHSIRGLEERLQTRLLTRTTRSVAATEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +   +E   + + ++    SG +RI        + L   LK FL  YP+++
Sbjct: 65  ERLIDSVGPLIADIEKALLHITDNVGSVSGNIRITAGEHALSSTLWPLLKPFLQAYPEVK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +DN   DI     D  +RL + I+   +  R      M   A+P YL     P + 
Sbjct: 125 VELSVDNTLTDIVSGRFDAGVRLGESIEKDMVAVRIGPNWRMAVVASPDYLAKYGRPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
            +L  HN +     +P     ++W  + D    E R+     L  N+  S +   + G G
Sbjct: 185 YQLQDHNCMNM--RLPTLGGLYSWEFSKDGK--EIRVKVEGQLIFNNLASRIDAALSGMG 240

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +P+  V+ + N   L  ++++   P    Y  YP   ++T    AF   I
Sbjct: 241 IACVPEDTVQHHINEGRLESLLDEWCEPFSGYYLYYPSRKQHTA---AFSKLI 290


>gi|260555324|ref|ZP_05827545.1| transcriptional regulatory protein [Acinetobacter baumannii ATCC
           19606]
 gi|260411866|gb|EEX05163.1| transcriptional regulatory protein [Acinetobacter baumannii ATCC
           19606]
          Length = 296

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT  G K
Sbjct: 5   DCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLNRTTRQMNLTSCGEK 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP I+I 
Sbjct: 65  FYQHCKVILSEFEWATYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPSIKID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQ 184
           L + ++ +D++    D  IRL     + SL   K++ T   + YA P Y      P S++
Sbjct: 125 LFMTDQLLDVNQHKFDLTIRLDG--SAPSLANSKILNTYQRYLYATPEYFNQHGLPTSLE 182

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240
           EL +H  LI + D   K +          +   E   +C  V   N+   ++  C+   G
Sbjct: 183 ELKEHKFLIYYQDSRHKKL-------IFQKDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+
Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFL 288


>gi|206579234|ref|YP_002236667.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288933639|ref|YP_003437698.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206568292|gb|ACI10068.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288888368|gb|ADC56686.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 299

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 134/294 (45%), Gaps = 14/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGTISAAARKLEITPPSVSNALKLLEEHIGHPLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+     LET+   L++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTAAAVEVLETSLESLRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  ++I  +  D  IR    ++   + +  +       YA+  YL     P    
Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILEGGVVARPLMKPFREGLYASSAYLAEYGVPAVPA 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L+ H LI +       ++P  + D     TV+ P        L  N    +      G 
Sbjct: 186 DLNHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHGL 239

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  L + I +  P+    + +MED       VY  YP+    T ++KA  +F+
Sbjct: 240 GIGRLFEPIWRLQPDREQFLPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFL 293


>gi|16119552|ref|NP_396258.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15162106|gb|AAK90699.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 300

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 10/289 (3%)

Query: 5   WDKLRVFYVVARSGS---FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +++L      AR+GS   +T AA  L +S S+IS+ I  LE  +G+ LF R  R LTLT 
Sbjct: 7   FERLTGLIAFARAGSLGSYTAAARSLSVSPSAISKSIQRLEAHLGVSLFTRTTRSLTLTA 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  +H     +    E  +   + +  +P+G LRIAT++ +G +++   L +F  L+P 
Sbjct: 67  EGRDIHGRALRLLRDAEAIEQAAKTARAEPTGMLRIATSMAIGLHVIAPALAKFRKLHPK 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L +  +D+  +  D A+R+   +  S L+ R+L    +  YA+P YL     P 
Sbjct: 127 VAFDLRLSDHRVDLVEEGIDLAVRIGD-LPDSRLLSRRLSPHRLCCYASPDYLAMHGTPK 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L+ H  +          + F W   + DR +     S + V++  ++M       G
Sbjct: 186 HPDDLEAHETVNL--RYQSTGQVFRWPFRIGDRDVEIVPSSGIIVDASEAVMATIATDGG 243

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I +   ++ +   +   LV ++ D       +   +PE+ ++   ++AF
Sbjct: 244 IGMAASFMARPWVNRGELVPVLSDFAVERNNITAVWPESRRSNPAVRAF 292


>gi|332307390|ref|YP_004435241.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174719|gb|AEE23973.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 301

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 11/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  +AR+ + + A ++  LS +  S  IS LE  +G++L +R  R ++LTE+G  
Sbjct: 4   EHLKLFVRIARTCNISAAGQEQDLSPAVASAYISKLEDNLGVRLVHRTTRKVSLTEEGEA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+   +ET +  + +    P G LR+      G+  +   L EFL  YP++ + 
Sbjct: 64  FLPHAEEILTNIETARASIGDGEHNPKGVLRVTAPASFGRMHIVPALAEFLARYPELSVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              ++  +D+     D AIR    ++ S+L  RKL        A+P Y+K   EP + Q+
Sbjct: 124 FRFNDSIVDLVEGGFDIAIR-DAALKDSNLFARKLAPDRRIVCASPKYIKEFGEPKTPQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +  H  +    L     E      +V +  G+ RI     ++  ++    + GSG+ +  
Sbjct: 183 VANHQCVNLKGLDTWEFEAEKGSVSV-KANGKIRI-----DNGEAVRDAGIEGSGLVMSS 236

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIF 291
               Y    +  LV++++D    S T ++  YP   +   K++AF +F  
Sbjct: 237 IWCAYQALQSGQLVQVLKDYPMVSKTAIWAVYPSNRQLAPKVRAFIDFFL 286


>gi|328675265|gb|AEB27940.1| transcriptional regulator, LysR family [Francisella cf. novicida
           3523]
          Length = 298

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 17/288 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
              FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT +G  L 
Sbjct: 12  FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELRVDLLNRTTRSLSLTHEGRLLF 71

Query: 68  RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                + ++++  + +L ES  K PSG L+I+T+    QN+L   +KE+   +  ++I++
Sbjct: 72  NYCRNLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130

Query: 127 ILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++ K  D   +  D   A+    P     ++ RK+ T      A+P YLK    P ++ 
Sbjct: 131 SIEEKMPDFKANEVDIIFAVNWTPP---EDIVARKIATTRYVLCASPTYLKKNGFPSNLS 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIAL 243
           +L  HN       IP        + T +  I    +      + +  ++ CVL   GIA 
Sbjct: 188 DLANHN------YIPHKSRTTALVNTKNNKINPQTLPYSISANNIDFIKECVLNDFGIAQ 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             +YIVK+   N  L+ +++D       +Y  YP+      K+K F N
Sbjct: 242 FHEYIVKNEIQNGQLIELLKDDFFDQQDIYIYYPKNKFVQPKVKEFVN 289


>gi|298486830|ref|ZP_07004886.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158697|gb|EFH99761.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 300

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 115/251 (45%), Gaps = 15/251 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  +ISR+++ LE ++G++LF+R  R ++LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H  ET +  L+  +   SG LR+      GQ ++   L   +   P + I L 
Sbjct: 66  PHAKTMLHASETARATLKGDTGTASGVLRVTAPSVFGQTVIMPLLPVLMQENPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI     D AIR+   I+ S+L+ R L        A+P YL    +P  ++EL 
Sbjct: 126 LSDSIVDIVGMGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLARHGKPALLEELR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243
            H  I         +    W +      GEP     Q     NS  ++   C  G G+A+
Sbjct: 185 HHPCI--------ALHAMPWWSFTKN--GEPITIRAQGPFSANSVEAVRTACKQGMGLAM 234

Query: 244 LPDYIVKDNPN 254
           L  + V+   N
Sbjct: 235 LTYWDVRQEIN 245


>gi|222080845|ref|YP_002540208.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725524|gb|ACM28613.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 298

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 13/246 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR+GS T AA +L L+QS++SRQI  LE ++G++LF R  + + LT  G    
Sbjct: 18  LSAFEAAARTGSVTVAARELDLTQSAVSRQIKALEGQLGVELFVRERQTIRLTLAGDSYA 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E   ++ +  ++L+ +     G L +A     G   L   L +FL   P I I L+
Sbjct: 78  REIREALRRISSASLDLRANPN--GGTLNVAILPTFGTRWLAPRLGDFLATNPGITINLV 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--EPLSIQE 185
                 D  +D  D AI    P    + +   +    M A  +P +L   R  EP    +
Sbjct: 136 TRLSPFDFRLDSIDAAIHFGHPHWPGAELAFLMSERTMPA-CSPDFLARHRLVEPADFLQ 194

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +   +L T  D   K      WLA    P     +  +  + + +  Q  + G G+ALLP
Sbjct: 195 VPLLHLTTRPDAWEK------WLAANGAPASG--VRGMLFDQFATAAQAAISGLGVALLP 246

Query: 246 DYIVKD 251
            +++++
Sbjct: 247 TFLIQE 252


>gi|325915944|ref|ZP_08178240.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325537911|gb|EGD09611.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 298

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 136/295 (46%), Gaps = 19/295 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA    F+ AA+ L  S ++++RQ++ LE  +G +L  R  R ++LT  G+ 
Sbjct: 5   DAMRVFTAVAERSGFSAAADALDRSTANVTRQVAALEQRLGTRLLNRTTRRVSLTSAGTA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   L+  +  +   +++PSG LR+   +  G   L   L  F   YP +++ 
Sbjct: 65  YYQRCLQLLADLDDLEATIGAQALEPSGVLRVNAPVSYGIERLGALLPGFRARYPQVELD 124

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L ++ +D+  +  D AIR+ R+P  +  LI R+L  + +   AAP YL     P    
Sbjct: 125 LSLSDRLVDMVEEGFDVAIRITRQP--APMLIARQLGKVRLLTCAAPAYLARAGTPRHPS 182

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L  H  + +     GD +     D +    +           L+ N+   +    + G 
Sbjct: 183 DLAGHECLLYHYSPSGDELRFHGPDGDVTVRIH--------GGLRANNGHVLNAAALAGQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+ + PD++      +  LVR++ +       ++  Y        K+++F +++ 
Sbjct: 235 GVVMQPDFLADAHIASGRLVRLLPEYELGEIGIFAVYASRSHLAPKVRSFIDYLL 289


>gi|271500821|ref|YP_003333846.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344376|gb|ACZ77141.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 302

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 135/299 (45%), Gaps = 18/299 (6%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  +   GS T AA+ L +S++ ++R ++ +E     +L +R  R L+LT +G  + +
Sbjct: 8   QVFVTITEQGSLTGAADALEMSRAMVTRYLAEMERWAEARLLHRSTRQLSLTHEGETVLQ 67

Query: 69  VTSE---VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              E   V HKL+      +E    P+G LR+  +  L Q  L   +  +LL YP   + 
Sbjct: 68  HCRELLAVSHKLDMPAKGRKE----PAGLLRLTCSPSLAQATLVAAITTYLLRYPKTAVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +  +++  +  D AIR+   +  S LI R+L        A+P YL     P  +++
Sbjct: 124 LQVASHTLNLIEERIDLAIRITNQLD-SGLIARRLGGCPSVVCASPSYLATHGTPQRVED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN +T+     K +  F         I  P       N  L +++  + G+G++L P
Sbjct: 183 LAVHNCLTY-SFFGKSLWQFTRKGDA---IAVPVSGSFSANDSLVLLEAALNGAGVSLQP 238

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298
            Y V D   +  L+ +  +       +Y  Y    + +  L+A  +F+   F    +WK
Sbjct: 239 VYSVTDLIASKRLIALFPESQPQELDIYAVYHSRERMSPALRALVDFLAEWFGNNLEWK 297


>gi|186475182|ref|YP_001856652.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191641|gb|ACC69606.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 341

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 1/195 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +   +R+F   A+ GS + A  +L L+ ++ S +++ LE  +  +LF R  R L LT
Sbjct: 1   MTDNLGDIRLFVEAAQLGSLSAAGRKLGLTPAAASARLAKLEGGLKARLFERTTRQLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G        +    L+  +  LQE      GK+RI+ T D G+NLL   L EF  LYP
Sbjct: 61  DEGRVYLSCCQQALRALDDAEAALQEGQNAVRGKVRISATSDFGRNLLMHWLDEFNALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+   L L +   ++  +  D AIR   P Q SSL+ R L        A+P Y+    EP
Sbjct: 121 DVTFALTLSDSLQNLVQEDIDLAIRFGVP-QDSSLVARWLAPNPRVLCASPEYIARHGEP 179

Query: 181 LSIQELDKHNLITFG 195
               +L + + I  G
Sbjct: 180 KDPLDLARFDCIVLG 194


>gi|21232642|ref|NP_638559.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767255|ref|YP_242017.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114447|gb|AAM42483.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572587|gb|AAY47997.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 303

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 137/296 (46%), Gaps = 21/296 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F  VA  GSFT AAE L L ++S+S  +  LE  +G +L +R  R + LT  G+ 
Sbjct: 5   DTLRAFLRVAELGSFTRAAETLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLTADGTA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ + ++   ++  Q   Q    +  G+LR+  +  + +  +   L  FL  +P ++I+
Sbjct: 65  FYQRSRDLLDDMDELQGMFQRDHSQLRGRLRVDMSAGIARQFVIPALPAFLAQHPQLEIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC +R+   ++ +SL+ R L  + +   A+  YL     P ++++
Sbjct: 125 ISGTDRRVDLVREGFDCVLRV-GTVEDTSLVGRPLGVLRIINVASAQYLAQRGVPQTLED 183

Query: 186 LDKHNLI----TFGDLIPKC----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           L +H+L+    T G   P         ++WL         P    + VN+  + +     
Sbjct: 184 LAQHDLVHYVSTLGQRSPGFEYHDGAQYHWL---------PMRGPVTVNNGDAYLAAARA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI   P   ++   D+  LV ++  +      V   Y +      +++ F ++I
Sbjct: 235 GLGIIQAPASPLQAHLDSGVLVEVLAQMAPEPMPVTLLYAQRRHLPQRVRLFMDWI 290


>gi|330815693|ref|YP_004359398.1| Putative LysR-family transcriptional regulator [Burkholderia
           gladioli BSR3]
 gi|327368086|gb|AEA59442.1| Putative LysR-family transcriptional regulator [Burkholderia
           gladioli BSR3]
          Length = 323

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 20/265 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G++  
Sbjct: 7   MRVFVCVAELQSFRQAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGTRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  +  +P G LRI  +  L    L   +  F   YP +++QL 
Sbjct: 67  DGCRALLEEFDHLEASVAHTIREPVGTLRIVVSGSLSPQRLTPLVDGFRRQYPKVRVQLT 126

Query: 128 LDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +  ID +   Y    I  RK    ++L+   L      A A+P Y++   EP    EL
Sbjct: 127 VADGPIDGLDTAYDAAIIAGRKIEDGAALVSHALAPDPFVAVASPAYIEQRGEPHRPDEL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-------QVNSYLSIMQYCVLGS 239
            +H  +T    +P     F W     R +   R + L        +N    +    + GS
Sbjct: 187 ARHAAVT----LPLDSHGFAW-----RFVDAGRFAHLVTLQPAYTINDAWLVRAAVMAGS 237

Query: 240 GIALLPDYIVKD---NPNLVRIMED 261
           GIA+LP+  V D      LVR++ D
Sbjct: 238 GIAILPESFVADAISRGELVRLLAD 262


>gi|327193735|gb|EGE60614.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 300

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 122/281 (43%), Gaps = 6/281 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V + GS + AA +L L+Q +I R +  LE  +G +LF R   GL  T+   
Sbjct: 7   WDFYRSFLTVLQHGSLSAAARELGLTQPTIGRHVDALERAIGAELFTRSPNGLLPTDAAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                + +G +RI+ +  +   +L   L      +P++QI
Sbjct: 67  ALKPYAETLAATTAALLRTASSQRERVAGTIRISASEVIAVEVLPAILGPLQDAHPELQI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +   D+    AD A+R+ +P Q  +L+ R++  I +  +A   YL+    P S+ 
Sbjct: 127 ELSASDAIEDLVNREADIAVRMAEP-QQDALVVRRIGDIPLGFHAHRRYLERYGIPQSVA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H LI F          +  L     P+ E      + +S L+ +     G GI L 
Sbjct: 186 ALANHRLIGF-----DRQTAYVRLVMKRYPVPEGIQFAYRTDSNLAQLAAIRAGVGIGLC 240

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
              + ++NP+LV ++ D        +    E+LK + + +A
Sbjct: 241 QIGLARENPDLVHLLADAFNIPLGTWVAMHESLKTSPRCRA 281


>gi|308186844|ref|YP_003930975.1| hypothetical protein Pvag_1336 [Pantoea vagans C9-1]
 gi|308057354|gb|ADO09526.1| Uncharacterized HTH-type transcriptional regulator yhjC [Pantoea
           vagans C9-1]
          Length = 307

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 132/295 (44%), Gaps = 16/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  SGSFT AA+ L++ ++++S+ +  LE  + ++L  R  R +T+T +G + +
Sbjct: 7   IKAFSRVVESGSFTRAADSLNMPKATLSKLVQELEAHLSVRLLQRTTRRVTVTAEGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H LE           KP G LR+       +++L   L +F   YPDI + L 
Sbjct: 67  EKALRILHDLEDIDACFNALRSKPRGHLRVDIGGSTARDILIPLLPDFFARYPDITLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           + ++ +++  D  DC IR   P+  SSL+ R +    +   A P YLK    P    EL 
Sbjct: 127 VSDRPVNLISDNVDCVIR-GGPLADSSLVARLIGHATLITCATPAYLKASGVPAYPDELR 185

Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + H L+++     G   P   E       +   I   RI   + N +L+     + G GI
Sbjct: 186 NGHWLVSYLSPLTGKPFPLRFERQEEKIEI---ISAHRIGVNESNGHLAA---GLAGLGI 239

Query: 242 ALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                Y    +     +V I+ D     +  +  YP+    T +L+ F +++  +
Sbjct: 240 IQTFSYSLSAILRRGEMVEILRDWRPAGYPFHLVYPQNRHVTQRLRVFIDWLVAR 294


>gi|260777469|ref|ZP_05886363.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607135|gb|EEX33409.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 296

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 131/273 (47%), Gaps = 18/273 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA + SFT AAE L +S+  +SR +  +E  +  +L +R  R ++LT  G +  
Sbjct: 7   IRSFVEVANAKSFTKAAESLDISRLQVSRHVQEVEHWLQQRLLHRTTRKVSLTHAGEQAF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPS--GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +    E   +EL     K +  G +R+A  I   QNLL   ++ F+ L+P + I 
Sbjct: 67  VRCQRILD--EAAALELDSMCGKDALVGTIRVAAPIGFAQNLLIDRVQNFVSLHPKVVID 124

Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +++ ++  +  D A+R   KP  + +LI R+L+ I     A+  YL    EP   +
Sbjct: 125 ILASDQNSELVDERVDVALRFTDKP--ADNLIARRLMAIDTAICASRDYLSEFGEPKHAE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL  HN +T  ++        NWL   D    +  +S  ++ N   ++++  V G G+  
Sbjct: 183 ELVDHNCLTHLNV-------KNWLFVKDNQTVDVEVSGNIRANDLSTLVRVAVNGKGVIR 235

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           LP  +     +   L+ I+ D   PS+ ++  Y
Sbjct: 236 LPCDLANPLIEKGELLSILNDYHYPSYALWAVY 268


>gi|33601913|ref|NP_889473.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33576350|emb|CAE33429.1| probable LysR family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 295

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 6/268 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +  V+A + SFT AA++L +S+S IS ++  LE E+G+ L  R  R +  TE G+ L   
Sbjct: 1   MLAVLADTRSFTAAAQRLGVSKSLISLRMKALEQELGVSLLLRTTRSVHPTEAGALLVER 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE +  E++  +  P G+LR+   + LG+  L   L      +PDI +++ L 
Sbjct: 61  ARPALDTLEDSLGEVRNLARAPRGRLRLTAPVALGRQHLGIWLARLGQHFPDIALEVYLS 120

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +++  +  D A+R    + S + + ++L     H  A+P YL     P    EL +H
Sbjct: 121 DRFVNLRQEGYDFALRHADQV-SDAYVSKRLCATRAHLVASPAYLARHGRPAHPSELARH 179

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +          F         +    + CL VN+   + +    G GIA++PD+ +
Sbjct: 180 RCLLYRGDERSPQWSFAPRQGRGAAVHVKPVDCLSVNNSELLRESAAHGLGIAMVPDFSL 239

Query: 250 KDNPNLVRIMEDVITPSFTVYFCYPEAL 277
            D  +L     + + P +  Y  +  +L
Sbjct: 240 GDCADL-----EPVLPQWDCYAGFGRSL 262


>gi|152979204|ref|YP_001344833.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150840927|gb|ABR74898.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 302

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 8/245 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA+  +F+  A +  ++ S ISRQI  LE + G  LFYR  R +TLT+ G +  
Sbjct: 11  LEIFLAVAKEKNFSEVARRYDVASSVISRQIKQLEDDFGQTLFYRSTRSMTLTQAGERFA 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +    EL+++  +P+G +RI   +  GQ  +  +L E    YP +QI L 
Sbjct: 71  DYVQNLLGQFDGLCNELRQTDSEPTGTVRINAPVFFGQKHITPHLPELQKRYPKLQIHLT 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQEL 186
             +  +D     AD  IR+     S+  ++ K++    H   A+P +L     P S  +L
Sbjct: 131 QTDDFVDPYSQTADLIIRIAGLADSN--LKMKIIARQRHFLLASPAFLAQFGTPRSTDDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            ++  + +   +      F     +    G+P       N+  S+++  V G GI ++PD
Sbjct: 189 PRYQGLFYRGQLGILHWRFGQSGRIMD--GQPYFVS---NNAASLIEMAVKGLGIVMMPD 243

Query: 247 YIVKD 251
           + V D
Sbjct: 244 WAVAD 248


>gi|156978111|ref|YP_001449017.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156529705|gb|ABU74790.1| hypothetical protein VIBHAR_06916 [Vibrio harveyi ATCC BAA-1116]
          Length = 272

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 132/277 (47%), Gaps = 18/277 (6%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79
            + AAE+L ++ S++SR+IS +E   G+KL  R  R L LTE+G  L+R    V   L  
Sbjct: 1   MSKAAEELGINASTVSRKISEIEAYYGVKLLIRSTRALNLTEEGKALYRYFQNVDDVLRR 60

Query: 80  TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139
           ++ E+    ++P+G L++   +DLG  LLQ  L  F   YP + + L   N+ +D+  + 
Sbjct: 61  SEDEIMHHQLEPTGILKVVVPVDLGNLLLQDALVSFSQKYPKVLLDLDFSNRQVDMLEEG 120

Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK-HNLITFGDLI 198
            D    + + + S SLI  +L++   +  A+  YL    E  SI +L   H  +      
Sbjct: 121 IDIWFCIGE-VNSKSLISSELLSYRRYLMASKTYLLEYGEIGSIADLKAPHRQL------ 173

Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNL 255
            K    F +  + D+ + +     L VNS  +I + C  G G+A +   +V+    +  L
Sbjct: 174 -KSKNPFIYQES-DKSVLKQLPVALTVNSGYTIFKACTSGLGLAFIMSSLVEKYDTDKTL 231

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V ++ + I    +V   Y E      KLK  R   FL
Sbjct: 232 VPVLPNEIYQQSSVNMVYKER-----KLKPMRVEYFL 263


>gi|53719362|ref|YP_108348.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|67640533|ref|ZP_00439336.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121600049|ref|YP_992916.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124384979|ref|YP_001026252.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126442202|ref|YP_001058997.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126448249|ref|YP_001080473.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126454207|ref|YP_001066246.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134277448|ref|ZP_01764163.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167002534|ref|ZP_02268324.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167738567|ref|ZP_02411341.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167815787|ref|ZP_02447467.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167845703|ref|ZP_02471211.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167894275|ref|ZP_02481677.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167902669|ref|ZP_02489874.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910914|ref|ZP_02498005.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|217421907|ref|ZP_03453411.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|237812258|ref|YP_002896709.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242317376|ref|ZP_04816392.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254177812|ref|ZP_04884467.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254179800|ref|ZP_04886399.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254188800|ref|ZP_04895311.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199779|ref|ZP_04906145.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254206104|ref|ZP_04912456.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254297645|ref|ZP_04965098.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254358474|ref|ZP_04974747.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52209776|emb|CAH35747.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|121228859|gb|ABM51377.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124292999|gb|ABN02268.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126221695|gb|ABN85201.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126227849|gb|ABN91389.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126241119|gb|ABO04212.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134251098|gb|EBA51177.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147749375|gb|EDK56449.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147753547|gb|EDK60612.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148027601|gb|EDK85622.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157808022|gb|EDO85192.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157936479|gb|EDO92149.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698851|gb|EDP88821.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|184210340|gb|EDU07383.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217395649|gb|EEC35667.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|237503166|gb|ACQ95484.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238521263|gb|EEP84716.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242140615|gb|EES27017.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243061808|gb|EES43994.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 306

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G + +
Sbjct: 11  LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
             T++ Y ++   +  L ++  +P G LRI + + L ++++  + L EF   YP + +++
Sbjct: 71  DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     P  + +L
Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGVPAKLADL 189

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            +H  I F    PK      W
Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208


>gi|322832333|ref|YP_004212360.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167534|gb|ADW73233.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 302

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++ RVF  VA  GSF  AA  L + ++S+S  I  LE+++G++L +R  R + LT  G 
Sbjct: 4   FNQYRVFTQVAEMGSFVRAASALSVPRASVSAAIQQLESQLGVRLLHRTTRTVRLTTDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +  ++E      Q S  + SGKL I     + + L+   L E L  +P +Q+
Sbjct: 64  QLLERVRPLLAEVEDIDQSFQLSQRQASGKLTIDVPSRIARRLIAPALPELLRCHPHLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+  D  DCAIR+   +  SSL+ R L  I +   A+P YL     P    
Sbjct: 124 VLGSSDRAIDLVQDGVDCAIRV-GVLHDSSLVVRSLGHITLINCASPAYLSEHGLPSQPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +L   +L   G +  +  ++  W   + D  I    +   + VN+  S +  C+ G G+ 
Sbjct: 183 DLVGEHL-AIGYISSRTGKELPWQYQSKDGHIHSVSVPHQVGVNNAESYIACCLAGLGLI 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +P + V+   D+  L+ ++ D    S  V   YP   + + +L  F  +
Sbjct: 242 QIPRFDVQHLLDSGELIEVLPDYRAASMPVSLLYPHRRQRSRRLAVFHAW 291


>gi|293394188|ref|ZP_06638488.1| HTH-type transcriptional activator AaeR [Serratia odorifera DSM
           4582]
 gi|291423166|gb|EFE96395.1| HTH-type transcriptional activator AaeR [Serratia odorifera DSM
           4582]
          Length = 303

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ V+  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVYAKVVECGSFTAAARQLDMSVSSISQTVSKLENELQVKLLNRSTRSIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  ++     +L   +  P+G LRI ++  + QN+L     + L  YP + + L
Sbjct: 66  YQGCRRMLQEVSEVHEQLYAFNNTPTGTLRIGSSSTMAQNVLATMTADMLKEYPGLTVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  ++L ++ M   AA  YL     P      
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSKRLGSMPMVICAAKSYLAQHGTPQK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISC---LQVNSYLSIMQ 233
                       P  M +F+WL    RP  E           RIS       N   ++++
Sbjct: 181 ------------PNDMVNFSWLEYSVRPDSEFELIAPEGISTRISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKAGAGIAYAP 240


>gi|209919164|ref|YP_002293248.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|300816316|ref|ZP_07096538.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|209912423|dbj|BAG77497.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|300531006|gb|EFK52068.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|324018056|gb|EGB87275.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
          Length = 307

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|167719585|ref|ZP_02402821.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 247

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G + +
Sbjct: 11  LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
             T++ Y ++   +  L ++  +P G LRI + + L ++++  + L EF   YP + +++
Sbjct: 71  DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     P  + +L
Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGVPTKLADL 189

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            +H  I F    PK      W
Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208


>gi|53723424|ref|YP_102835.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|52426847|gb|AAU47440.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
          Length = 304

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G + +
Sbjct: 9   LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
             T++ Y ++   +  L ++  +P G LRI + + L ++++  + L EF   YP + +++
Sbjct: 69  DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     P  + +L
Sbjct: 128 RYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGVPAKLADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            +H  I F    PK      W
Sbjct: 188 ARHMCIRF--RFPKSGRLHKW 206


>gi|115360371|ref|YP_777508.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285699|gb|ABI91174.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 297

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 5/271 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR  SFT AA +L +SQS++S+ +  LET +G++L  R  R ++ TE G +
Sbjct: 7   NDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLETRLGVRLLTRTTRSVSTTEAGEE 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +  +    ++E     + +   KP+G +RI  T      ++   L+  L  YPDI+++
Sbjct: 67  LFQAVAPRIDEIEMKLAAVADFRDKPAGVVRITATEHPIDTIIWPKLRRVLPDYPDIRVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D    +I  +  D  +R    +    +  R    I M   A+P YL   + P + Q+
Sbjct: 127 LSVDYGLANIVEERYDIGVRYGDQVAKDMIAVRISPDIRMTMVASPAYLDGRKPPKTPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  H+ +T      K +  + W     R   + R+S  +  N+   ++Q  + G GIA +
Sbjct: 187 LLDHDCVTLRLATAKGI--YAWELKKGRNEIQARVSGRITCNTQPHMVQAALDGFGIAFV 244

Query: 245 PDYIVKDN--PNLVRIMEDVITPSFTVYFCY 273
            + IV D+     +RI+     P F  Y  Y
Sbjct: 245 TEDIVLDHVRSGQLRIVMPDWCPVFPGYHAY 275


>gi|116050491|ref|YP_790690.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585712|gb|ABJ11727.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 301

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA +G F  AA Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    
Sbjct: 7   LKVFRAVAANGGFAAAARQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   LE     L      PSG LR++  + L    L   +  FL  YPD++++L+
Sbjct: 67  QRLERILDDLEAADAALTSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+  +  D A+R    +  S L+ R L+ +     AAP YL    +PL  + L 
Sbjct: 127 LQDGRQDLIAEGIDLALRGSDRVADSGLVARPLLILEHVLCAAPAYLGQHGQPLRPEALR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F            W     R  +  P     +V+S L++    + G G++L+P 
Sbjct: 187 EHECIRFS----LSGHADRWTFRKGRECVAVPIAGRYRVSSSLAVRDALLAGFGLSLIPR 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       LV ++         ++  YP + +  GK + F +F+
Sbjct: 243 LYVQAELAEGRLVELLAGWKADETAIHAVYP-SRQLAGKTRVFLDFL 288


>gi|269963740|ref|ZP_06178059.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831533|gb|EEZ85673.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 320

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 140/297 (47%), Gaps = 22/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L +F      G F  A+ + H+S  ++SR ++ LE ++G KL +R+A+   LT  G
Sbjct: 18  DISNLYLFCQSVECGGFAAASLKAHVSAPTLSRAVASLEDKLGEKLVHRNAKQFQLTTAG 77

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++  + ++ +L     +L  S    +G++R++       N LQ    EF+ L+P++ 
Sbjct: 78  DEYYQRFAALFMQLNDEWTQLSNSQPVLTGEIRVSCPEPFADNFLQKMAIEFMQLHPEVS 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +           +  D AI +  P  ++ LIQR+L    +   A+P Y++   +P   
Sbjct: 138 VTIQFSAGTERFFDEQIDLAI-VTTPPHANHLIQRQLFESPLMLAASPSYIEKYGQPERA 196

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPR--ISCLQVNSYLSIMQYCVL 237
           +EL  H L++ G+ +P       W    D    R   +PR  IS L++N     +   + 
Sbjct: 197 EELMNHQLLS-GNNLPY------WELKKDGKAIRIPYQPRYSISSLRLN-----IDATIA 244

Query: 238 GSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+GI ++P    + +     LV ++ DV  P+   +  + +      ++ AFR+ IF
Sbjct: 245 GAGICMMPRAAFEKHAARKELVEVLSDVEYPTGKAFLVWADRKLIATRVVAFRDMIF 301


>gi|18478993|dbj|BAB84544.1| putative temperature-dependent regulator A [Serratia marcescens]
          Length = 303

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 111/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVEFGSFTAAARQLGMSVSSISQTVSKLENELQVKLLNRSTRSIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  ++     +L   +  P+G LRI ++  + QN+L     E +  YP + + L
Sbjct: 66  YQGCRRMLQEVSEVHEQLYAFNNTPAGTLRIGSSSTMAQNVLANMTAEMMKEYPGLTVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR    +Q SSL  R+L  + M   AA  YL     P      
Sbjct: 126 VTGIPAPDLITDGLDLVIRT-GALQDSSLFSRRLGQMPMVVCAAKSYLIQHGTPQK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISC---LQVNSYLSIMQ 233
                       P  M +F+WL    RP  E           RIS       N   ++++
Sbjct: 181 ------------PSDMVNFSWLEYSVRPDSEFELMSPEGITTRISPQGRFVTNDSSTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKNGAGIAYAP 240


>gi|84386686|ref|ZP_00989712.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84378492|gb|EAP95349.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 299

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 136/296 (45%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +++F  V   GSF+ AA+ L ++ + + R I+ +E  +G  L  R  R + LT  G 
Sbjct: 4   YRNMQLFCTVVDKGSFSRAAKALGITPAIVGRHIAAMEDSLGFVLLNRTTRSMHLTPGGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     V   +E  +  L  +    P G +R++    +G  L+   +KEF   Y  I+
Sbjct: 64  AYYEGAQAVLSDIEQLEDSLTTAHQNNPEGLIRLSAPDAMGPYLMT-VIKEFRKEYTGIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L N  +++  +  D +IR    +Q SS I  KL    +  YA+P Y+   + P   
Sbjct: 123 FDLALSNSHLNLIEEEIDLSIRFSFELQDSSYIATKLGESELGLYASPSYISEYQAPSDY 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +L  H+ +  G+      +   W+ TVD       +P ++ +  ++  +++Q  V G G
Sbjct: 183 TDLKNHDCLHMGN----SRDGDYWMLTVDGKSLSYRQPWVAVISDSN--TLIQAAVDGMG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA++P   V    ++ +LV+I      P   +Y  YP     T K   +R  +FL+
Sbjct: 237 IAMIPSIFVNKYVNSGSLVKIKNVAEFPIVNIYGMYP-----TRKHVPYRLSLFLE 287


>gi|222081053|ref|YP_002540416.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725732|gb|ACM28821.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 301

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 123/251 (49%), Gaps = 11/251 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+D L +F  +A++G    A     + ++++SR++S LE  + ++L  R  +G+ LTEQG
Sbjct: 6   DFDGLALFIRIAQAGGLASAERATGIPKATLSRRLSVLEESLNVRLVRRTKKGVVLTEQG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L   +   +   E    E+Q+  V  SG +R++   D+   +L   L +F   YPD+ 
Sbjct: 66  QQLFDRSQTAFMLAEQAVAEVQDERVALSGTVRLSLPPDMATAVLAPTLIDFKTRYPDVT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREP 180
           I++ L ++ + +  +  D  +R+  P+  S L+ +++ T+     A+P +L    +   P
Sbjct: 126 IEMTLADRRVSLIEEGYDLVVRM-GPVADSELMFKRIATLPRTLVASPAFLSGHPDLSAP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++ L    L    D I   +++   +    R    PRI     N    +++    G G
Sbjct: 185 GDVEML--PALAIRRDRIEWDLQNAQGV----RETVRPRIG-FAANRQTILVEAACAGLG 237

Query: 241 IALLPDYIVKD 251
           IA LP +++KD
Sbjct: 238 IANLPKFMIKD 248


>gi|152985332|ref|YP_001348695.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960490|gb|ABR82515.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 311

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 141/301 (46%), Gaps = 21/301 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  ++ + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGREIGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E     + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMADQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+LV       AAP  +   R 
Sbjct: 121 LVQLEILLTNRRVDLLNEGVDVALRVREIGDEDPALVCRRLVPATTQILAAPTLIGGRR- 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIM 232
              ++  D    + F   I     D    AT+  P G       EPR   L V+ +L   
Sbjct: 180 ---LEHPDDLADLPFLGAIEN---DRKVHATLIGPDGSRYHLAREPR---LGVDDFLLRK 230

Query: 233 QYCVLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  + G G+ L+P+ Y  K+    +L+RI+     P  T+   Y         ++A  +F
Sbjct: 231 KAAIAGLGVTLMPEGYCDKELAEGSLIRILPHWTLPQSTLQAAYLPRSSQVPAIRALLDF 290

Query: 290 I 290
           +
Sbjct: 291 L 291


>gi|78357533|ref|YP_388982.1| LysR family transcriptional regulator [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219938|gb|ABB39287.1| transcriptional regulator, LysR family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 297

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 126/261 (48%), Gaps = 29/261 (11%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL----HRV 69
           VAR  SF+ AAE L +  S++SR+I  LE  +G+ LFYR  R + LT+ G+ L      V
Sbjct: 18  VARQKSFSKAAEALGIGVSTLSRRIKLLEKRMGVLLFYRDTRNVELTDNGAYLLDRCGFV 77

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             EV    ++  + +Q    KPSG +R+   +DL   LL+  L +F   +PDI ++L   
Sbjct: 78  LEEVQKAYDSVVLNMQ----KPSGLVRVCMFLDLYDGLLKKVLLDFAARWPDISLELTFQ 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQEL 186
           +  +D+     D A      I + +L+ RKL+TI    YA+P  L+     REP  +  +
Sbjct: 134 DHPVDMRTAPFDVAFVTGNAI-APALVTRKLLTIEPFLYASPLLLERYPMPREPDDLHRM 192

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL-- 244
               L  FG   P  M + +   TVD     PR S    +S      + + G G+ALL  
Sbjct: 193 PCIVLQRFGGRWP--MHNGSRQVTVDV---VPRYS---FSSVEMCRDFLLAGHGVALLRK 244

Query: 245 ----PDYIVKDNPNLVRIMED 261
               PD   +    LVR++ D
Sbjct: 245 ERARPD---EKAGRLVRLLPD 262


>gi|119386961|ref|YP_918016.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377556|gb|ABL72320.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 298

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 129/295 (43%), Gaps = 10/295 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  V   GS T     L +S +  S +I  LET  G++L  R  R L  TE G  
Sbjct: 5   ESLRVFVRVVELGSITAGGRDLRMSPAVASNRIKDLETRYGVRLLNRTTRKLVPTEVGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   L+  +  +   S  P G LR+   + LG+ L+   + +F   YP ++++
Sbjct: 65  FYDNARRVIETLDEAEAVVSGFSGMPHGALRVTAPLGLGRRLIAPLVPKFCDEYPGVEVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++DI  D  D A  L +P Q S+L  R++        A P YL+    P   ++
Sbjct: 125 LRLSDRNVDIIADGIDLAFFLGEP-QDSALKWRRIAECRRVLVATPAYLEQHGRPERPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN +      P+  E +  L T + P           +    +  + + G GI   P
Sbjct: 184 LTAHNCLLL--RYPRSPEYYWVLQTPEGPQKMLVNGKFDADDGDVLSAWALGGRGIVNRP 241

Query: 246 DYIVKDNPNLVRIMEDV----ITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            Y V ++    R++E +     TPS F V    P       K++ F +FI  + R
Sbjct: 242 RYEVAEHLASGRLVEVLPEYPPTPSQFGV--LTPHRRLQDPKVRLFADFIAREVR 294


>gi|26989584|ref|NP_745009.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|148548038|ref|YP_001268140.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|24984463|gb|AAN68473.1|AE016479_13 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
 gi|148512096|gb|ABQ78956.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 300

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 128/297 (43%), Gaps = 24/297 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A  QL + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  + E     +   S +P G+LR++  + L    L   +  FL  YP +Q
Sbjct: 63  ERYLHHCQAMLLEAEAADETVASMSSEPRGRLRVSCPVALAHAFLPDVISRFLEQYPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++L N+ +D+  +  D A+R+R    +  +L+ R+L    M   AAP +  + REP  
Sbjct: 123 LDMVLLNRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIREPGE 182

Query: 183 IQEL------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +  L      +   L+ F    P   +    L        EPR++   ++ ++       
Sbjct: 183 LASLPVLGAAEADRLVHFRLFGPHGKQQEIAL--------EPRLA---IDDFVVRNAAVR 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G   LP    ++      LVR++ D   P   +   YP      G L A R +I
Sbjct: 232 AGLGFTALPSMFCEEELERGELVRLLPDWSLPGGYLQAVYPH---RRGLLPAVRVWI 285


>gi|312971526|ref|ZP_07785701.1| uncharacterized HTH-type transcriptional regulator ycjZ
           [Escherichia coli 1827-70]
 gi|310336123|gb|EFQ01323.1| uncharacterized HTH-type transcriptional regulator ycjZ
           [Escherichia coli 1827-70]
 gi|323962489|gb|EGB58071.1| lysR family protein regulatory helix-turn-helix protein
           [Escherichia coli H489]
          Length = 257

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 3/239 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  I     +P       W L    R +       L +N+   I+   + G G+A LP
Sbjct: 189 DHQAINL--YLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245


>gi|307946693|ref|ZP_07662028.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307770357|gb|EFO29583.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 316

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 137/295 (46%), Gaps = 16/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VA  GS + A  +  LS S+ S +++ LE E+G +L  R  R ++LTE G  
Sbjct: 4   EDLNFFTRVAELGSLSAAGREFGLSPSAASSRLTNLEKELGSQLVARTTRQVSLTEAGKI 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +         +++  +  +  +   P G LRI+  +  G+  +   L EF  LYPD+++ 
Sbjct: 64  MLEHARAALSEIDQARSTIDAAQDAPRGVLRISANVFFGRKHILPYLGEFRQLYPDLKLD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + ++ +D+  +  D AIR   P+  SSL+ RKL        A+P Y+     P S  +
Sbjct: 124 IDMSDRLVDLVNEGYDVAIR-GAPLPDSSLMARKLGGNPRVLCASPDYIARKGAPCSPDD 182

Query: 186 LDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H+ I F D +P       D      +D P+       +  +S     +  + G G+ 
Sbjct: 183 LRNHDYIGF-DPMPVWHFSGPDGEIAFNLDDPV-------ISGDSGDFAYEAALYGLGLT 234

Query: 243 LLPD-YIVKD--NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +    ++ +D  +  LV +M D  IT +  +Y  YP A     K+ AF +F+  K
Sbjct: 235 VKSSAHVWEDLRDGRLVEVMMDYPITRTGNIYAVYPPAKFLAPKVSAFVDFLISK 289


>gi|323525498|ref|YP_004227651.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382500|gb|ADX54591.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 328

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 139/301 (46%), Gaps = 25/301 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+  YP+
Sbjct: 65  AGQLFYQHCQAMLDEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSTILPEFMHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ +D+  D  D A+R+R  P ++++++ R L         AP  L+    P
Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L   +L +   +     +P    D   +  +  P G       EPR+    V + LS ++
Sbjct: 185 LQPNDLSRFETLD----VPTS--DGRHVYNLIAPDGSRHAHEHEPRL----VTADLSTIR 234

Query: 234 YCVL-GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             VL G GIA LP+ +         L  +M     P+  +Y  +   +   G + A R F
Sbjct: 235 EAVLAGVGIAALPEMMYGAALRAGQLSPVMPGWTFPAPQLYAVF---VSRQGMVPAVRAF 291

Query: 290 I 290
           +
Sbjct: 292 V 292


>gi|73540722|ref|YP_295242.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72118135|gb|AAZ60398.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 297

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 133/292 (45%), Gaps = 15/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F   AR  SFT AA  LH++Q ++S+Q+  LE+ +G++LF R  + L LT  G + 
Sbjct: 7   ELQAFEASARHSSFTAAARALHVTQGAVSKQVRSLESLLGVELFERVRQRLILTPAGVRY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    ++E   +E      + +G L IA+   LG   L   L +F   +P+++++ 
Sbjct: 67  LERVRPTLDEIEAATVEAAGREQQ-AGTLHIASMPTLGAKWLIPRLPQFFARHPEVRLEF 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSL----IQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   +    +    D AIR    +   SL    I R++V +   A  A H       P  
Sbjct: 126 VPHAQGYVFAEPELDAAIRFGVGVWPGSLADYMIGREIVPVCRPALVAGHPGGVVGAPAE 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +Q+    +  T    +P+   D  W A +  P  +   +  + + +  + Q  + G GIA
Sbjct: 186 LQQYPLLHHTT----VPEAWPD--WFAELGVPTRD-AWAGARFDQFSLLTQAALSGLGIA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L+P  ++++   N  LV      +  +   Y CYPE  ++   L+ FR ++ 
Sbjct: 239 LIPRCLIEEELANGALVVAHPARVLSNKGYYLCYPEHKQHLPALQTFRAWLM 290


>gi|311109394|ref|YP_003982247.1| HTH-type transcriptional regulator YeaT [Achromobacter xylosoxidans
           A8]
 gi|310764083|gb|ADP19532.1| uncharacterized HTH-type transcriptional regulator YeaT
           [Achromobacter xylosoxidans A8]
          Length = 307

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 133/288 (46%), Gaps = 10/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V + G+ + AA +L L+  ++S +++ LE  +G++L  R  R +++T++G    
Sbjct: 7   LAFFSLVVKHGNLSAAARELGLTPPAVSTRLAKLEQRLGVRLLNRTTRRVSVTQEGELYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +  +  +  +P G LR+  T   G+  +   + +F   YP++++Q+ 
Sbjct: 67  AEGGRILTDLEALERSVSSARARPQGLLRLNATFGFGRAHIVPAVSDFARQYPEVEVQMR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D A+R    +  + L  RK+ +      A+P YL+   EP +  +L 
Sbjct: 127 LTDRPLNLIEEGFDVAVRF-GDLPDARLTARKIASNRRLLCASPRYLETHGEPRAPGDLQ 185

Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H  I     D+        + L      +  P    L  N   S +++ + G GI +  
Sbjct: 186 RHRCIVVRENDVAYGTWRLESGLRAETVKVRGP----LSSNDGQSALEWALDGHGIVMRS 241

Query: 246 DYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++   D+    R   ++ D  TP   ++  YPE L    K  AF  F+
Sbjct: 242 EWETADHLRAGRLRVVLADWRTPPADIHALYPERLNLPAKTIAFVEFL 289


>gi|226944184|ref|YP_002799257.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226719111|gb|ACO78282.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 305

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 2/184 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V   G F+ AA    ++ S++S+ +S LE  +G +L  R  R L LT +G   
Sbjct: 13  ELEVFVRVIELGGFSAAARAFGMTPSAVSKLVSRLEQRLGTRLVNRSTRQLQLTPEGCAF 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   LE  +    E +  P G+LR+   +  G   L     +FL  +PD+ + +
Sbjct: 73  YERGVRILADLEEAERCAGEHTA-PRGRLRVNANVPFGHRFLLPLTPKFLERHPDVTLDI 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ IDI     D A+R   P++SS+L+ RKL    M    AP YL +   P + Q+L
Sbjct: 132 VLTDEVIDILEQRTDVAVRA-GPLKSSNLMARKLGQTRMTIVGAPGYLAHHGTPTTPQDL 190

Query: 187 DKHN 190
            +HN
Sbjct: 191 LQHN 194


>gi|88797432|ref|ZP_01113021.1| Transcriptional regulator [Reinekea sp. MED297]
 gi|88779604|gb|EAR10790.1| Transcriptional regulator [Reinekea sp. MED297]
          Length = 303

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 10/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW++ R F + A +GS + A + L L+QS++ RQ+S  E E+G+ LF R A GL +T
Sbjct: 12  LRFDWNRARAFLLTAETGSLSAAGKALGLTQSTVGRQVSAFEAELGVALFERSATGLNIT 71

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L      +        +   E+S    G + I+ T      LL   + E +   P
Sbjct: 72  PTGLRLLERLRGMGSAANEFYLAATEASETLEGHIAISATQLAATYLLPPLVMELVRKNP 131

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+  N+  D+    AD A+R  +P Q   LI RKL       YA+  Y++     
Sbjct: 132 GLSVDLMATNQSSDLRRREADIALRAYRPDQ-PDLIARKLRDDTYRFYASHDYVERMAGR 190

Query: 181 LSIQELDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L+ +   +   I F     I   ++      ++D          +  N + +  +    G
Sbjct: 191 LNAKHSQELTFIGFDQAHRIVDLLQSQGLNVSLDN-------FAIASNEHPAHWELTKQG 243

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +GI L+   +    P +  ++ D+  P+  ++      +K + +L+   +F+
Sbjct: 244 AGIGLMLSEVGDQEPRVANVLPDIRLPTSELWIVAHRDVKTSRRLRLVWDFL 295


>gi|134293556|ref|YP_001117292.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136713|gb|ABO57827.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 317

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 125/295 (42%), Gaps = 18/295 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G   
Sbjct: 6   NMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTSAGENY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD+ I+L
Sbjct: 66  LRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPTLTRYHAQYPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A+P Y+     P    +L
Sbjct: 126 SLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPEYVTRHGAPEHPTDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  +T   L         W+      + +  ++  +Q N+  S+      G GI +LP
Sbjct: 186 GAHACLT---LCTPAFPTHEWVLEGADGVEQIHVAGPVQTNTAESLALAIRDGLGIGMLP 242

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            Y   D   +  LVR++   I     VY  YP            R F+  K R W
Sbjct: 243 LYSAIDALQDGTLVRVLPSHILQKMNVYALYPS-----------RRFVDAKVRTW 286


>gi|330901545|gb|EGH32964.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 293

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 130/281 (46%), Gaps = 11/281 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  +A S S + AA +L LS  +ISR+++ LE ++G++L +R  R ++LT +G      
Sbjct: 1   MFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSVSLTPEGEVFLPH 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              + H  ET +  L+  +   SG LR+      GQ ++   L   +   P + I L L 
Sbjct: 61  AKTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQENPALSIDLTLS 120

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +DI+    D AIR+   I+ S+L+ R L        A+P YL     P  + EL +H
Sbjct: 121 DSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLARHGRPSILDELRQH 179

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             IT        M  + ++   + P+          NS  ++   C  G G+A+L  + V
Sbjct: 180 PCITL-----HAMPYWPFIREGE-PVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYWDV 233

Query: 250 KD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +      +L++I  EDVI    +V    P   +   +++ F
Sbjct: 234 QQEIREGSLLQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLF 274


>gi|221197379|ref|ZP_03570426.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221204053|ref|ZP_03577071.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176219|gb|EEE08648.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183933|gb|EEE16333.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 297

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 126/293 (43%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+ 
Sbjct: 12  NALRAFEVAARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                    H +      L    VK    L I+TT       L   L +F   +PDI ++
Sbjct: 72  YFSDVQRALHAIADATDRL----VKRRATLTISTTPSFASKWLIPRLAQFTDAHPDIDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D +      D  D AIR  KP     L    L  + + A  +P  L     P S + 
Sbjct: 128 VIADQQLATFRHDGVDLAIRYGKPPFGKHLAAHALFPLDVCAVCSPALLA---APASPRA 184

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    DL P       ++A +  P+       L+ N     +   V G GIAL 
Sbjct: 185 LAGHVLLHDAHDLWPA------FIAALPEPVDVDPHKGLRFNQTSLAIDAAVAGQGIALA 238

Query: 245 PDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D +V+ +    R+ +  D   P S   Y  YP   ++   +   R+++   A
Sbjct: 239 TDPLVERDVAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDAIAVMRDWMIGAA 291


>gi|218710114|ref|YP_002417735.1| hypothetical protein VS_2135 [Vibrio splendidus LGP32]
 gi|218323133|emb|CAV19310.1| similar to transcriptional regulator, LysR family [Vibrio
           splendidus LGP32]
          Length = 319

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 131/262 (50%), Gaps = 8/262 (3%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSF   AEQ ++ +S IS+QIS LE E+ ++L  R  R L+LT  G+++     ++   L
Sbjct: 17  GSFVKVAEQRNVDRSVISKQISRLEEELDVRLLNRTTRSLSLTAAGNEMVNQAHQLRALL 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
             T+   Q    +P G LRI ++   G+  +Q  +  F   YPD+  +L L+++ +D+  
Sbjct: 77  NDTRRLAQNYHAEPRGLLRITSSTMFGRQYVQQAIAVFQKQYPDVDFELRLEDRIVDMVK 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           +  D   R+ KP ++SSLI RK+    +   A+P ++    E  +I++L+      +   
Sbjct: 137 EGFDIGFRIGKP-KNSSLISRKIARSRLLIVASPEFIAQHGEINTIEKLESLPATIYA-- 193

Query: 198 IPKCMED-FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NP 253
            P  + D F+++    +       +  +VN    I +  + GS +A++   +++D   + 
Sbjct: 194 APGLLIDKFSYVDQEGQAQHFQLNAAYKVNDVEMISKSALTGSTLAVVTAQMIEDEVLSG 253

Query: 254 NLVRIMEDVITPSF-TVYFCYP 274
            LV IM  +    F T Y  YP
Sbjct: 254 ELVPIMTHLNLDDFGTFYAVYP 275


>gi|188492459|ref|ZP_02999729.1| transcriptional regulator, LysR family [Escherichia coli 53638]
 gi|188487658|gb|EDU62761.1| transcriptional regulator, LysR family [Escherichia coli 53638]
          Length = 302

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +         A P Y 
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SCIVEKDMISVAIGPPVKLCVAATPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               +P    +L  H  + F    P   + F+W    +  I       + ++   + ++ 
Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289
            ++G+GI  L    +K   D   L  ++ED  T  P F +Y  YP     +  L+AF ++
Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287

Query: 290 I 290
           +
Sbjct: 288 V 288


>gi|27375363|ref|NP_766892.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27348499|dbj|BAC45517.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 325

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 5/195 (2%)

Query: 3   FDWDK---LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           FD ++   + VF  V   G FT AA +L L+ S +S+ IS LE  +G +L  R  R LTL
Sbjct: 4   FDTNRSAEMEVFVRVVDLGGFTQAARKLRLTPSGVSKLISRLEVRLGSRLINRTTRKLTL 63

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE+G   ++    +             S   P G+L + + I  G   +   +  FL  +
Sbjct: 64  TEEGQAFYQRAVRIL-AEMEEAEREAASGAAPRGRLTVNSNIPFGMLHVMPLIPRFLEQH 122

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ + L+L +  ID+  + AD AIR+  P+++S L+ RKL T  M    AP+YL     
Sbjct: 123 PDVTLDLVLTDTLIDLMQERADVAIRV-GPLRASRLVARKLGTSRMVVVGAPNYLARFGT 181

Query: 180 PLSIQELDKHNLITF 194
           P    +L  H  I +
Sbjct: 182 PKIPADLADHRGIGW 196


>gi|238786984|ref|ZP_04630784.1| transcriptional regulator [Yersinia frederiksenii ATCC 33641]
 gi|238724772|gb|EEQ16412.1| transcriptional regulator [Yersinia frederiksenii ATCC 33641]
          Length = 298

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 100/189 (52%), Gaps = 1/189 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GSF+  A QL +S S+ISR +S LE  + I+L  R  R L L++ G ++ 
Sbjct: 1   MAIFVKVVETGSFSAVARQLGVSTSAISRSVSRLEKALTIRLLQRTTRKLRLSDSGEEVF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  + + +   +      + + +P G +RI+    +G+ ++  +L EFL  Y  I +QLI
Sbjct: 61  KRCNAMLNAANSVMEVGGQYNQEPEGLIRISVPKAVGRFVIHPHLPEFLRRYSKINVQLI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  ++ D AIR+        ++ R+L+ I     A P YL     PL   +L 
Sbjct: 121 LDDRYVDLIDEHVDLAIRITNQ-PPPGMVGRQLMNIEHLLCATPEYLATHGVPLHPHDLA 179

Query: 188 KHNLITFGD 196
            H+ I  G+
Sbjct: 180 HHSCIYLGE 188


>gi|323166519|gb|EFZ52282.1| hypothetical protein SS53G_3197 [Shigella sonnei 53G]
          Length = 307

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITIEFL 291


>gi|209522145|ref|ZP_03270790.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209497413|gb|EDZ97623.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 305

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 132/303 (43%), Gaps = 21/303 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  VA  GSF  AA QL++S S ++R +S LE  +GI+LF R  R + LTE G+
Sbjct: 5   FQAMQAFVKVADVGSFAQAAAQLNVSTSVVTRHVSSLEQHLGIRLFQRTTRKVVLTEAGA 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  +LE  +     +S + +G LR+          L     E+   +P + +
Sbjct: 65  QYADGCRVLLAELEEVESRATTASREVAGDLRVVALGSFSLVRLTPLFAEYQARFPQVNL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L  K +D+     D  I     I+S SL+ R+L+  H    AA  YL     P +  
Sbjct: 125 RVTLTEKRVDLLEGGFDVGIVTEHMIRSESLVVRRLIDSHAVPVAAAAYLAQAGHPQTPA 184

Query: 185 ELDKHNLIT--FGDLIPK-CMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS 239
           EL  H LI   F    P       N  A      GE     +   VNS +   Q      
Sbjct: 185 ELAGHRLIAAPFDTTGPMWIFRKGNGDAASASDAGESIAIDASFTVNSMIMQKQAVRGAM 244

Query: 240 GIALLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIALLP  +V+D   +  LVR+++D  V+     V   YP            R F+  K 
Sbjct: 245 GIALLPLEMVEDELRDGTLVRVLDDYTVLNGDVAVSLVYPS-----------REFVPRKV 293

Query: 295 RDW 297
           R++
Sbjct: 294 REF 296


>gi|163759014|ref|ZP_02166100.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
 gi|162283418|gb|EDQ33703.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
          Length = 293

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 135/305 (44%), Gaps = 43/305 (14%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD   L  F  VA   SF+ AA+ L +++ ++SR I+ LE E+GI+L +R    + L+  
Sbjct: 5   FDLRLLTTFAAVAEHQSFSRAAKALGVAKGTVSRTITQLEAELGIELVHRTTHHVALSTA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+  T      L+T+   L E   +PSG LRIA   + G  +L   +  F   +P++
Sbjct: 65  GAALYERTRGHLSALQTSVSNLPELEDEPSGLLRIAAAPEFGVLVLPAIISAFSQRFPNV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  + L   + D+  +  D AIR+    ++ S+L  R++       YAAP Y+     P 
Sbjct: 125 RFDIRLSTDNADLVREGYDLAIRVATGSLKDSALKMRRIARGTTAFYAAPAYIARQGRPK 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV----- 236
            + E  +H+ +    ++     D +                         +QYCV     
Sbjct: 185 RLLE-KRHSWVLHAGIVQLLKLDADG------------------------VQYCVDDFFL 219

Query: 237 ------LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-----CYPEALKNTGKLKA 285
                  G G+ LLP ++ + +     ++E+V      V F      YP + +   K+ A
Sbjct: 220 ARDLMREGVGVGLLPTFMARSDLK-EGLLEEVSLQEPHVLFGDLVVLYPSSGQTPKKVTA 278

Query: 286 FRNFI 290
           FR+F+
Sbjct: 279 FRDFL 283


>gi|152971827|ref|YP_001336936.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956676|gb|ABR78706.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 308

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 14/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGNISAAARKLEITPPSVSNALRLLEEHIGHPLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+     LE +   +++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTAAAVETLEKSLEIIRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  ++I  +  D  IR    ++   + +  +       YA+  YL     P    
Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILEGGVVARPLMKPFREGLYASSAYLAEYGVPAMPA 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L  H LI +       ++P  + D     TV+ P        L  N    +      G 
Sbjct: 186 DLHHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHGL 239

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  L + I++  P+    + +MED       VY  YP+    T ++KA  +F+ + A D
Sbjct: 240 GIGRLFEPILQLQPDREQFIPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFLIMYAAD 299


>gi|119468826|ref|ZP_01611851.1| transcriptional regulator, LysR family protein [Alteromonadales
           bacterium TW-7]
 gi|119447478|gb|EAW28745.1| transcriptional regulator, LysR family protein [Alteromonadales
           bacterium TW-7]
          Length = 298

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 141/293 (48%), Gaps = 14/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VA + + + A  +L LS    S  I  LE  +G+KL +R  R ++LTE+G +
Sbjct: 4   EHLKLFVRVASTHNISSAGAELGLSPPVASMHIIKLEESLGVKLIHRTTRRVSLTEEGRE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+ + + + +  +   S  P G +R+A     G+  +   LK F+  +P++++ 
Sbjct: 64  FLPHAEEILNAINSAKAAVGAGSFTPQGTIRVAAPSSFGRMHIVPALKAFIDQHPELKVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D+     D AIR    +  S+L+ RKL   H    A+P Y+    EP + Q+
Sbjct: 124 LRQSDSIVDMVEGGFDIAIR-NAELNDSTLVARKLARDHRIICASPGYIAEHGEPKTPQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN I    +      D+ W       I + ++   +++++  SI   C+  +GI + 
Sbjct: 183 LLNHNCIKLIGI------DY-WSFKTPNGIEKVKVKGSIRIDNGESIRDACINDAGITIS 235

Query: 245 PDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +   +      LV+I++D  +  +  ++  YP +     K++AF +F F+K
Sbjct: 236 SIWCAHNALKEGTLVQILKDYPMDSNAAIWAVYPSSRLLAPKVRAFIDF-FIK 287


>gi|114777052|ref|ZP_01452072.1| transcriptional regulator, LysR family protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114552573|gb|EAU55033.1| transcriptional regulator, LysR family protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 295

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 125/289 (43%), Gaps = 14/289 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR+F  VAR GS +  A +L +  S++SR++  LET++G++L  R   G  LT  
Sbjct: 1   MNWDDLRLFLAVAREGSISGGARKLGVQHSTVSRRMQTLETKLGVRLIERKKSGYELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      + H++      L     +  G+LR++    +   +L     +F    PD+
Sbjct: 61  GESLKIAACRMEHEVLEVDGFLGGRDNRLIGELRVSAISSMASGILMPMFAKFSRNNPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +++ NK+I +    AD AIRL     S +LI  +L T+    YA+  YL   R    
Sbjct: 121 DLHVLVSNKNISLVERDADVAIRLTN-TPSDALIGTQLATVSSTIYASHRYLDQLR---- 175

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             E  K   +     +  C    +W  T     G+       V+  L          G+A
Sbjct: 176 -SEGGKPKWLG----VSCCAFHQSW--TKKSAAGQRH--NFFVDDALLTTAALKQHMGLA 226

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LP +I    P L R        +  ++  +   LK T ++ AFR+ + 
Sbjct: 227 YLPCFIGDSEPELARYCAPDPQMNLGLWLLFHPDLKRTARVLAFRDHMI 275


>gi|157960385|ref|YP_001500419.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845385|gb|ABV85884.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 304

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 133/288 (46%), Gaps = 13/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F V+A  GSFT AAE+L  S+S +S+Q++ LE  +G+ L  R  R   LTEQG   +
Sbjct: 10  VRAFTVIAEKGSFTLAAEKLGCSRSHLSKQLTQLERYLGVTLITRTTRAQRLTEQGQFFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                    +E    +  + +    GK+ I      +G+ ++   + +F+ L+P+I I L
Sbjct: 70  ERCQHALDVMEQAVAKTVDDAHNLQGKININCVGGYIGEEIVNQLVNDFMSLHPNIHIHL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+ +D  D   R+ + ++ S L+ RKL+ I     A+P Y+     P + +EL
Sbjct: 130 DFSSQRVDLVLDEFDLVFRMGE-LEDSGLVARKLMDIANCTLASPRYIAKHGRPENPKEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244
             H  +T        +  +N+    D+    E  I+   +     +M+   L G+GI  L
Sbjct: 189 KSHACVT------GSVYHWNYHRRSDKTQKTEVTITGALLCKNGRVMKSSALAGNGIVRL 242

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P+       N   LV + +D       +Y  Y +      +L+ F  F
Sbjct: 243 PEIYCSAELNKGELVHVFDDWTISDTPLYLLYSKDQFQPARLRQFIEF 290


>gi|77457164|ref|YP_346669.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381167|gb|ABA72680.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 322

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 137/293 (46%), Gaps = 16/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAEAGSFTAAAVQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  E+  +P+G+L++ T   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILAYVEEAEAEASEAHARPAGQLKVHTMTGIGQHFVIDAIARYRKTHPDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCREPLSIQ 184
            + N+  D+  +  D +I L + +  S  + ++L   +    A+P Y+K   C +  S  
Sbjct: 126 TMANRVPDLLDEGYDVSIVLARELPDSGFVSQRLGITYSIVCASPAYVKANGCAQKPS-- 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           +L  H  +    L+   +    W    D P G+  +    S   VNS  ++      G G
Sbjct: 184 DLLNHACLR---LVSPVIPLEKW--AFDGPDGQEMVTINSSPFLVNSADAMKSAITSGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +LP Y   +   N +LVR+M +  +    +Y  YP       K+K +  ++
Sbjct: 239 VGVLPVYAAIEGLRNGSLVRVMPNYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|86145043|ref|ZP_01063375.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85837942|gb|EAQ56054.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 298

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 137/303 (45%), Gaps = 33/303 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA   SFT AAE L +S+  +SR +  +E  +  +L +R  R ++LT  G    
Sbjct: 7   MRSFVEVANCASFTQAAEHLDMSRLQVSRHVQEIEGWLKQRLLHRTTRKVSLTAAGEIAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++     +   SG +RIA  I L QN+L   +++F   +P+I ++L 
Sbjct: 67  QRCEKILHETAELEVTSLNQTDDLSGVIRIAAPIGLTQNMLLDVVEQFTERHPNITVELF 126

Query: 128 -------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
                  L ++ IDI++ Y D      +P    SLI RKL+ I     A+  YL    EP
Sbjct: 127 ASDRFAQLVDERIDIALRYTD------QP--DDSLIARKLMEIDSVVCASQVYLDKYGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +++ L +HN         + +    W    D       +S  ++ N    + +    G 
Sbjct: 179 ETVEALRQHNCF-------RHLSVSKWDFVKDNQHYSVEVSGTIKANDVGVLTRAAQHGK 231

Query: 240 GIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  LP  +   NP      L RI++D ++PS  ++  Y   L  + +L   R FI   A
Sbjct: 232 GIVRLPCDLA--NPLIAEGKLKRILDDFVSPSSVLWAVY---LSRSYQLPVVRQFIDFAA 286

Query: 295 RDW 297
             W
Sbjct: 287 EVW 289


>gi|271499419|ref|YP_003332444.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342974|gb|ACZ75739.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 319

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 134/291 (46%), Gaps = 20/291 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +A  GS T  A +  LS  ++S++++ LE  +G++L  R  R L LT +G  
Sbjct: 5   DDLLFFSRIAALGSLTAVARESGLSLPAVSKRLTQLEQRLGVQLIRRTTRRLDLTPEGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  + H++E  + +++ + +   G+L +  +   G+  +   + EF  L+P++++Q
Sbjct: 65  YAEGALPILHEIEELESQVRRNQLTLRGRLTVNASFGFGRRHIAPLISEFARLHPELEMQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +++     D  IR   P   S L+  +L+       A+P YL  C  P ++ +
Sbjct: 125 LQLTSQPLNMLDAGVDIDIRFGAP-PDSRLVAHRLMANPRVLCASPAYLARCGTPKTVAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVD------RPIGEPRISCLQVNSYLSIMQYCVLG 238
           L +HN +    ++ +   D+  W    D      R  G      L  N    IM+Y + G
Sbjct: 184 LAEHNCL----VLRQYESDYGLWRFYRDGHEFTHRAFGN-----LSANDGEVIMRYALDG 234

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GI L   + V+    N  LV ++ D I P   +Y  Y +      ++ AF
Sbjct: 235 HGIILRSLWDVRSWLGNGRLVALLPDYIMPEADIYAVYQQRRHVPARISAF 285


>gi|170703181|ref|ZP_02893990.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170131913|gb|EDT00432.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 303

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 132/290 (45%), Gaps = 11/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT +G+  +
Sbjct: 7   MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLRVRLLQRTTRRVALTAEGATYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+  +    ++   P G +R+        N +   L +F   YPD+++ L 
Sbjct: 67  ERCTRLLADLDDAETLFDDAGAAPRGVIRVDLPERFALNKVIPALPDFHARYPDLRVVLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P S  +L 
Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRIGELAQINCASPAYLARHGTPRSPDDLP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  +  G    +   + +W    D   G  +     S + VNS  + +  C+ G G+  
Sbjct: 186 DH--VAVGYFSTRTGRELDW-EYADMDTGALQTVKMRSSVAVNSSQAYLACCLAGLGMIQ 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P   +    ++ +LV ++ +       V   +P       +++ F +++
Sbjct: 243 APREGLAPLLEDGSLVEVLPEWHAEPLPVSVVFPNGRHLAPRVRIFVDWL 292


>gi|167569585|ref|ZP_02362459.1| probable transcriptional regulator [Burkholderia oklahomensis
           C6786]
          Length = 290

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 7/244 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   G F+ AA    ++ S++S+ ++ LE  +G +L  R  R   LT +G   +  
Sbjct: 1   MFVRVIELGGFSAAARACGMTPSAVSKLVTRLEQRLGTRLVNRSTRQFQLTPEGCAFYER 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   LE  +     +   P G+LRI   +  G + L   + EFL L+PD+ + ++L 
Sbjct: 61  GVRILADLEEAE-RCASAYTTPRGRLRINANVPFGHHFLLPLVPEFLELHPDVTLDIVLT 119

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ IDI     D A+R   P++SS+L+ RKL    M    AP YL     P + +EL  H
Sbjct: 120 DEVIDILEQRTDVAVRA-GPLKSSNLLARKLGDTRMVIVGAPGYLTRHGMPATPEELLAH 178

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           N +       +      W L   +  +  P     Q +   ++    + G G+A L  + 
Sbjct: 179 NRLGANYARARS----GWPLRNANEDVVLPVTGNAQASDGEALRHLALAGVGLARLAAFQ 234

Query: 249 VKDN 252
           V+D+
Sbjct: 235 VRDD 238


>gi|148549734|ref|YP_001269836.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513792|gb|ABQ80652.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 316

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 10  ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N    
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQGYLDNHAPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L KH  I++ D +    E   +LA +         S   +  Y + +Q    G G
Sbjct: 189 RQVTDLAKHPFISYVDDLAFSSE-LLYLANLIPNASAHLRSTSVIAQYTAALQ----GRG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +P LV ++ + I  +   +    E L+   ++    ++I
Sbjct: 244 LAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 293


>gi|50119236|ref|YP_048403.1| putative DNA-binding transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609762|emb|CAG73196.1| putative temperature-dependent LysR-family regulator A
           [Pectobacterium atrosepticum SCRI1043]
          Length = 311

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 116/260 (44%), Gaps = 30/260 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S S++S+ +S LE E+ IKL  R  R + LTE G   +
Sbjct: 7   MSVFARVVECGSFTAAARQLQMSVSAVSQTVSKLEDELQIKLLNRSTRSIGLTEAGKIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H+      +L   +  P G LRI ++  + QN+L       L  YP + + L+
Sbjct: 67  HGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLSTMTAAMLKEYPGLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q S+L  ++L ++ M   AA  YL     P      D
Sbjct: 127 TGIPAPDLIADGLDIVIRV-GALQDSTLFSKRLGSMPMVVCAAKSYLAQHGTP------D 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQV--------NSYLSIMQY 234
           K          P  M +F+WL    RP  E     P     +V        N   +++++
Sbjct: 180 K----------PADMVNFSWLEYSVRPDSEFELIAPEGISTRVTPQGRFVTNDPQTLVRW 229

Query: 235 CVLGSGIALLPDYIVKDNPN 254
             +G+GIA +P   + D  N
Sbjct: 230 LKIGAGIAYIPLMWIVDEIN 249


>gi|83748239|ref|ZP_00945265.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207743507|ref|YP_002259899.1| hypothetical protein RSIPO_01686 [Ralstonia solanacearum IPO1609]
 gi|83725080|gb|EAP72232.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206594905|emb|CAQ61832.1| hypothetical protein RSIPO_01686 [Ralstonia solanacearum IPO1609]
          Length = 297

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 139/284 (48%), Gaps = 24/284 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  +  +     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGAAFLAHARGILAAVDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ ID+  +  D AIR+   ++ S+L  R+L T  +   A+P YLK    P
Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRI-GTLRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR------ISCLQVNSYLSIMQY 234
            +I++L  H L+ F  + P+ +   +W      P+  P       +  L+ +S  ++ Q 
Sbjct: 180 RTIEDLRHHVLLGF--VQPESLN--HW------PLRGPHGDRLRIVPTLKASSGETLRQL 229

Query: 235 CVLGSGIALLPDYIV---KDNPNLVRIMED----VITPSFTVYF 271
            + G+G+  L D++    +   +LV+++ D    ++ P   VY+
Sbjct: 230 ALQGAGLVCLADFMTAADRRAGHLVQVLPDATVEILQPIHAVYY 273


>gi|297537387|ref|YP_003673156.1| LysR family transcriptional regulator [Methylotenera sp. 301]
 gi|297256734|gb|ADI28579.1| transcriptional regulator, LysR family [Methylotenera sp. 301]
          Length = 307

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 20/296 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A  GSF+ AA +L ++   +S+ ++ LE ++G++LFYR  R L LTE G       
Sbjct: 10  FVRSAELGSFSAAARRLSMTPGGVSKNVAKLEADLGVRLFYRSTRSLKLTEAGEHFLAQV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           +     ++T          +P+G L++A  +  G++ +   L EFL LYP I+     DN
Sbjct: 70  TGGLDAIQTAIANASREGGQPAGTLKVALGLAFGRDHILPLLGEFLTLYPAIKPDWRFDN 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D AI     + +  ++ R+L  IH+   A+P YLK+   P +  EL K +
Sbjct: 130 RQVDLIGEGFDVAIG-GGIVLAPGVVVRELAPIHLVLVASPAYLKSKFMPQTPAELYKLD 188

Query: 191 LI-----TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +     T   + P  ++      AT++    +PR++   +N   ++    +   GIA +
Sbjct: 189 ALVRYSQTSNQITPWNLKTVAGNQATIEL---QPRVT---LNDPEALCHAAMASLGIAHV 242

Query: 245 P-DYIVK--DNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  + ++  ++  LVR++ D  T     ++YF   + +    K + F +FI  K R
Sbjct: 243 PMPHALQHLESGKLVRVLPDWYTEHGVMSLYFSAKKLMP--AKTRVFVDFIVDKFR 296


>gi|260596704|ref|YP_003209275.1| hypothetical protein CTU_09120 [Cronobacter turicensis z3032]
 gi|260215881|emb|CBA28405.1| hypothetical protein CTU_09120 [Cronobacter turicensis z3032]
          Length = 311

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 111/250 (44%), Gaps = 15/250 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  V    SF+  A +  +S S ISR +  LE  +G +LFYR+ R +  TE G    
Sbjct: 12  LQLFISVFDGQSFSAVARREGVSASMISRTVRQLEEALGQQLFYRNTRAVIPTEAGRLFA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +    + ELQ+ S++PSG LRI   +  GQ  +   L      YP +Q+ L 
Sbjct: 72  QYARGITEQFSEARRELQDRSLEPSGLLRINAPVFFGQRHIAPWLTGLAERYPRLQLALT 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D   D  D  +R+   +  SS   R       +  AAP YL     P S  E  
Sbjct: 132 QTDDYVDPHRDATDLIVRIGT-LTDSSFHARVFCEQRYYFAAAPRYLARYGAPASPAEFH 190

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSGI 241
            H  + + G   P       WLA   R  GEP +     + L  N+  S++   + G G+
Sbjct: 191 AHQCLVYSGSSGPN-----RWLA---RKPGEPWVHYPVSARLVSNNAHSLLTAALDGMGL 242

Query: 242 ALLPDYIVKD 251
            L PD++  +
Sbjct: 243 VLFPDWMTGE 252


>gi|254561342|ref|YP_003068437.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254268620|emb|CAX24579.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           DM4]
          Length = 320

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 135/300 (45%), Gaps = 26/300 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF VVA + SF  AA++L LS++++S+ ++ LE  +G +LF+R +R L LTE G
Sbjct: 6   DFEAWAVFAVVADALSFARAADELGLSKATVSKAVARLEGRLGARLFHRTSRRLALTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  +    +++  P G++R+A  +  G   +   L EFL  +  + 
Sbjct: 66  RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHVAPVLPEFLAAHAQVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     A P YL     P   
Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLARYGPPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGE-----PRISCLQVNSYLSIMQ 233
           ++L              C+  + +L T DR       GE     P    L+ N+  +++ 
Sbjct: 185 EDLKAR----------ACL-GYAYLPTPDRWPFTNAAGETVTIVPE-GPLRANNADALVP 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G G+A+ PD+ + ++     L R+M D   P   +    P  L    ++ A   F+
Sbjct: 233 ALRAGLGLAVQPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292


>gi|152997713|ref|YP_001342548.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150838637|gb|ABR72613.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 304

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 134/277 (48%), Gaps = 15/277 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA +GSF  AA+   +S  ++S++IS LE ++G++L +R  R L+LTE G  L+
Sbjct: 6   LTLFVNVADTGSFNKAAQLAGMSTPALSKRISKLEQDLGVQLIHRTTRRLSLTEAGESLY 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++      +   S   +G ++++     G+ LL   + EF   YP+I + + 
Sbjct: 66  VHAKNIEGQVSDAIASVSAFSQGLTGTIKMSVPTISGELLLAEAIAEFCQKYPNITVDMR 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N  +D+  +  D AIR  K ++ SSLI + L+  +     +P Y++   E  +++ L 
Sbjct: 126 LENDFVDLVGEGLDLAIRTGK-LEDSSLIAKPLIQSNWVVCCSPSYIERHGEVTNLEALK 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP------RIS-CLQVNSYLSIMQYCVLGSG 240
            HN + +     +    F+W  T  + +G+       RIS     N+  ++ +  + G G
Sbjct: 185 DHNCLAY---TYQAQGSFDWRFT-KQGVGKKTVEESVRISGSFATNNAQALRKAALAGFG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           I  +P   V ++     LV I+         VY  YP
Sbjct: 241 IVYVPRCCVYEDLMKGTLVAILPQYKPRQLGVYAIYP 277


>gi|146284551|ref|YP_001165504.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145320684|gb|ABP62830.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 275

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 119/261 (45%), Gaps = 6/261 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           + F  VAR  SFT AA QL +SQS++S  +  LE ++G++L  R  R +++TE G +L  
Sbjct: 10  QAFIAVAREKSFTKAAAQLGVSQSALSYTVRTLEADLGLRLLTRTTRSVSVTEAGERLLS 69

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                + ++E+    L     KP+G +RI         +L   L   +L YPDI I++I 
Sbjct: 70  RVGPHFDEIESEIAALSGLREKPAGTVRITAVEHAADTILWPKLVPVMLEYPDINIEIIS 129

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +    DI  +  D  +RL + +    +              AP Y      P + ++L+ 
Sbjct: 130 EYGLKDIVAERYDAGVRLGEQVDKDMVSLPLARDFRFAVVGAPSYFMGKAFPGTPRDLND 189

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDY 247
           H+ I     +P     + W    D    + RI      S +++M+   L G G+A LP  
Sbjct: 190 HSCIRL--RLPTHGGFYTWEFRKDETEIKVRIDGRATFSTINMMRQAALDGLGLAYLPLD 247

Query: 248 IVK---DNPNLVRIMEDVITP 265
            V+   +N  LV+++ D   P
Sbjct: 248 TVENYLENGMLVQVLTDWCPP 268


>gi|116248839|ref|YP_764680.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253489|emb|CAK11881.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 300

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 128/262 (48%), Gaps = 14/262 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG---- 63
           + VF + A   SF+ A  +L +S S++S+ ++ +E  +G +L  R  R +TLT +G    
Sbjct: 1   MEVFVMAAELQSFSAAGRRLKMSPSAVSKLVTRIEDRLGTRLLVRSTRTMTLTPEGEVYL 60

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+  R+ +++    ET QI      + P G LR+  ++  G+  L   +  FL LYP++Q
Sbjct: 61  SRARRILTDIT---ETEQIVAGGGKMIPRGLLRVNASVGFGERHLLALIPAFLELYPEVQ 117

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L +  I +  +  D AIR    +  SSL  RKL+       A+P YL     P + 
Sbjct: 118 LDISLTDGIIGLIEERTDIAIR-SGAMDDSSLKARKLLESRRVIVASPAYLDAKGIPKTP 176

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  HN  +F     + + ++ +       +   P      VNS + + + C+ GSG+ 
Sbjct: 177 QDLANHNCFSFN--FRRSLNEWPFRNPGTSEVYRLPVTGNTAVNSGMVMRRLCLSGSGLG 234

Query: 243 LLPDYIVK---DNPNLVRIMED 261
            +  + V+   D   L+ ++E+
Sbjct: 235 RVGQFHVQPDIDAGKLIPLLEE 256


>gi|325528891|gb|EGD05929.1| transcriptional regulator, LysR family protein [Burkholderia sp.
           TJI49]
          Length = 309

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 9/272 (3%)

Query: 23  AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82
           AA QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     
Sbjct: 22  AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGEAFYRECAEVVGRVNELTD 81

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
           +++E    P+G+LRI              L EF   YP IQ+ +I++++ +D   +  D 
Sbjct: 82  QMRELRATPTGRLRIQMLPGFALGHFGAPLAEFNRRYPGIQLDVIVNDRVVDPIEEGFDI 141

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202
           A ++  PI S SLI+R+L T+     A+P YL+    P   ++L +H    +     +  
Sbjct: 142 AFQIFPPI-SESLIERRLFTVRRLFCASPAYLEQHGAPQHPRDLLQHTTALYSGYPSRN- 199

Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258
               W  T    + E  +   ++ NS   +  Y + G G+  LP  +  D      LV I
Sbjct: 200 ---RWTMTHGDEVVEMELPGMIRSNSVHLLRDYALTGGGVVCLPTLVASDALVAGTLVPI 256

Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + D      +    YP   +   K+KA   F+
Sbjct: 257 LTDYHLAPLSFAAVYPATQRQALKVKALVEFL 288


>gi|296536969|ref|ZP_06898985.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296262702|gb|EFH09311.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 297

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 130/298 (43%), Gaps = 15/298 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F ++AR G F  AA +  +S S +S+ ++ LE  +G++L  R  R +  TE G +
Sbjct: 7   DQLEIFALIARRGGFRAAAAERGVSSSLMSQTMASLEQALGLRLLNRTTRSVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R       ++     EL +   +PSG LRI       +++L      F+  +P +Q++
Sbjct: 67  LLRRLGPALDEIRLALAELDQLREQPSGTLRINAPAPAAEHILCPLAFAFMAAHPGVQVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ D   IDI     D  +R  + ++   +       +     AAP YL+    P S  +
Sbjct: 127 IVSDAAIIDIVAQGFDAGVRFGRQLEQDMVAMPLGPPLRYAIVAAPEYLRRRGVPRSPAD 186

Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H+ I      G L     E       +  P        L ++S    +Q  + G GI
Sbjct: 187 LMAHDGIRRRYPGGSLARWRFEKAGEAVELTPP------GRLTLSSAHQELQAALAGQGI 240

Query: 242 A-LLPDYI--VKDNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFIFLKAR 295
           A +  DY         LV I+ D  +P+   +F  YP     +  ++AF +F+   AR
Sbjct: 241 AHVFEDYARPALAEGRLVEILAD-WSPTLPGWFLYYPNRRHGSAAMRAFLDFVRRSAR 297


>gi|222112510|ref|YP_002554774.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221731954|gb|ACM34774.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 308

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 130/291 (44%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR G  + AAE LHL+QS++S+Q+  LE  VG+ LF R  + L+LT  G +  
Sbjct: 13  LRAFCTVARFGGISRAAEALHLTQSAVSKQVQELERWVGVPLFERSRKRLSLTPAGERYE 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S +  +LE   +EL  S  +  G L ++    L    L   L +    +P I +  +
Sbjct: 73  KAVSALLARLEAATLELITSGDE-GGALHLSVLPTLAAKWLIPRLPQLRAQHPQITLHFV 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186
                 D +    DC+I         +  +   +T +  A   P        PL S Q++
Sbjct: 132 PYVHGYDFADPELDCSILFGDGHWPGA--RAHYLTGNDVALIGPRAGLAGAPPLHSPQDV 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H L+     +P   + +     V+   P+  P     Q + + +I++   +G G+AL+
Sbjct: 190 ARHTLLRHVS-VPGAWQHWAEAHGVNGLDPLAGP-----QFDQFQTIIRAVSVGMGLALV 243

Query: 245 PDYIVKDNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIF 291
           P  +V+D      + E +    +T     + CYPE+      L  FR+++ 
Sbjct: 244 PRCLVQDEIAAGTVTEPLPGGGYTSDLGYWLCYPESRAQLATLVRFRDWLL 294


>gi|66046169|ref|YP_236010.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256876|gb|AAY37972.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 294

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 130/283 (45%), Gaps = 11/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  +ISR+++ LE ++G++L +R  R  +LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSASLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H  ET +  L+  +   SG LR+      GQ ++   L   +   P + I L 
Sbjct: 66  PHAKTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQDNPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL    +P  + EL 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLARRGQPSLLDELR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  IT        M  + ++   + P+          NS  ++   C  G G+A+L  +
Sbjct: 185 QHPCITL-----HAMPYWPFIREGE-PVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYW 238

Query: 248 IVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286
            V+      +L +I  EDVI    +V    P   +   +++ F
Sbjct: 239 DVQQEIREGSLQQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLF 281


>gi|330954227|gb|EGH54487.1| LysR family transcriptional regulator [Pseudomonas syringae Cit 7]
          Length = 298

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 127/257 (49%), Gaps = 15/257 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGS + AAE++  + S +SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  ++E+ +  L  S   P+G+LRI        + +  ++ EF   YP
Sbjct: 61  EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHSIVPHVAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D+  ID+     D AIR+   +  S+L  R L +  ++  A+P YL+    P
Sbjct: 121 HIELELNSDDWFIDLLEQSTDIAIRI-GALSDSTLHARSLGSCLLNIVASPAYLQRHGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-W---LATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + +EL +H L+ F  +     E  N W    A  DR   +P IS     S    +++ V
Sbjct: 180 KTAEELAQHVLLGFTHV-----EVLNQWPLRHAGGDRLPIKPSISA----SSGDTLRHLV 230

Query: 237 L-GSGIALLPDYIVKDN 252
           L G GIA L D++  D+
Sbjct: 231 LEGVGIACLSDFMTCDD 247


>gi|323494931|ref|ZP_08100023.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323310895|gb|EGA64067.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 295

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 131/271 (48%), Gaps = 15/271 (5%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LH 67
           +VF  VA SGSFT  A++L +S+  ++R I  +E+ +  +L +R  R ++LT  G   L 
Sbjct: 8   KVFVDVATSGSFTATADRLEMSRPMVTRYIEAMESWLNARLLHRTTRKVSLTTAGEDCLE 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V  +++ K   +  +L  +  + SG +R+AT++  G + +   +++FL L+P + I + 
Sbjct: 68  EV--KLWLKQAESLGDLANTGGELSGTIRLATSMSFGYSQVVPVIQQFLALHPKVSIDVD 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ-EL 186
           L +   D++    D AIR+       SLI + +        A+PHYL N  EP+S   +L
Sbjct: 126 LQDSVTDLTDSQIDIAIRIAS-TPDPSLIGKPIALCESVIVASPHYLANS-EPISTPGDL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  + +     K  +   W  T         +SC L  N   +++   +   G+A+ P
Sbjct: 184 THHACLGY-----KNFQQHVWHLTKANLQQSVEVSCRLTANEATTLLNAALCHGGLAMQP 238

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            Y+V     N  L +++ D      TVY  Y
Sbjct: 239 TYLVSQYLKNGQLKQVLPDWKPDDMTVYVLY 269


>gi|319763777|ref|YP_004127714.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330823959|ref|YP_004387262.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317118338|gb|ADV00827.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329309331|gb|AEB83746.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 304

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 143/293 (48%), Gaps = 18/293 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F ++AR GS + AA +  +S ++ S++++ +E+ +G++L  R  R L LT +G   
Sbjct: 10  EMAFFSLLARLGSLSGAAREQGVSTAAASKRLAQMESRLGVRLVSRTTRRLHLTAEGETY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +  +++  +  + +    P G LR+  T+  G++ +   +  F+  YP IQ+QL
Sbjct: 70  LRHARRILAEIDAMEQLVADMQSTPQGLLRVNATLGFGRSHIAPLVPAFVRRYPQIQLQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +   ++ D  D  IR  +P   + +I R+L        AAP YL     P    +L
Sbjct: 130 QLSVQPPPLADDGFDVCIRFGEP-PDARVIARRLAPNRRLLCAAPAYLARRGTPARPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSG 240
            +H+ I       +  +D +    V R  G  +   +++ ++L+       + + + G G
Sbjct: 189 QQHDCIDI-----RQGDDAH---GVWRFAGARKHESVRLRNHLATNDGEIAVNWALAGLG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +  ++ V     +  LV++++D  TP   ++  YP+    T +++AF +F+
Sbjct: 241 LVMRAEWDVARYLRSGRLVQVLQDWQTPPADIHAVYPQRHAATTRVRAFVDFV 293


>gi|300724591|ref|YP_003713916.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
 gi|297631133|emb|CBJ91824.1| putative transcriptional regulator (fragment) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 252

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 3/191 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GSF+ AA QL  + S+ISR +S LE E+G +L  R  R L L+E G ++
Sbjct: 3   EMAIFAKVVETGSFSEAARQLAATPSAISRSVSRLEKELGTRLLQRTTRKLRLSESGQEV 62

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     + +  +         S +P G +RI+    +G  ++  ++  FL  YP + + L
Sbjct: 63  YEHCLNMVNAAQEVMAASGNFSHEPRGMIRISVPKAVGHFVVHPHIPAFLAQYPQVNVNL 122

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            LD++ +D+  D  D AIR+  +P     L+ R+L  I     A P YL     P    +
Sbjct: 123 RLDDRYVDLIDDQIDLAIRITDQP--PPGLMGRRLSNIWHMLCATPEYLAEHGTPQHPHD 180

Query: 186 LDKHNLITFGD 196
           L  HN I  G+
Sbjct: 181 LKTHNCIYLGE 191


>gi|194430021|ref|ZP_03062528.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|194411948|gb|EDX28263.1| transcriptional regulator, LysR family [Escherichia coli B171]
          Length = 314

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 15  NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 75  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 135 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 194 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 239

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 240 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298


>gi|190891899|ref|YP_001978441.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697178|gb|ACE91263.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 304

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 135/301 (44%), Gaps = 40/301 (13%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  +F+ AAE+L L+Q +ISRQI+ LE ++G+ LF R +RG+ LTE G+   
Sbjct: 15  LAAFDSVARLSTFSAAAEELSLTQGAISRQIAALEEQLGVLLFERTSRGVILTEAGTDYA 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +    ++ +    LQ  + + + +L +A     G   L   +  F+  +P+I +   
Sbjct: 75  RAIAGALAEIRSA--SLQAMTKQHNDQLNLAILPTFGTRWLMPRIPRFVARHPEITLNFA 132

Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                 D   D  D AI + +P     +S+ L++  +  +     A+P +L +       
Sbjct: 133 TRIGLFDFDRDDIDMAIHIGQPDWPGAESTFLMEEMVAPV-----ASPSFLSS------- 180

Query: 184 QELDKHNLITFGDLI----------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
                H ++T  DL+          P     F     VD   G P    ++   + S+ Q
Sbjct: 181 -----HPILTAEDLLRLPLLQMASRPAAWSHFFESLQVD---GTPS-QAMRFEQFSSVAQ 231

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            C+ G G+AL+P +++     N  LV+ +   +      Y   P + K+   + AFR ++
Sbjct: 232 ACIAGLGLALMPVFLIDSELANGQLVQALPHQVKSPSAYYAVAPLSRKDFRPVVAFRAWL 291

Query: 291 F 291
            
Sbjct: 292 L 292


>gi|113867777|ref|YP_726266.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526553|emb|CAJ92898.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 317

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 15/252 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR+GSF+  A +     SS++RQI  LE E+G+ LF R  R L  TE G  
Sbjct: 8   ENLATFVDVARAGSFSAVARRKGQVASSVARQIDALEREMGVALFTRSTRALVRTEAGDL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +  +L  T+  +       SG+LR+A      +  +  +L      YP + ++
Sbjct: 68  LFERATRILQELNETRDAVTALEQGVSGRLRVACLPAFARRHVVPHLGSLYAQYPGLTVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D  ++  D  IR+ +    SSLI R++ +      A P YL+    PL  +E
Sbjct: 128 LELTDRVVDPVLERFDVVIRVGQQA-DSSLIARRIASQRYIVCATPAYLQAHGRPLHAEE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNS-YLSIMQYCVLGSG 240
           L  H LI         M  +     V RP         + C   ++  LS++Q    G G
Sbjct: 187 LAHHRLIDRAH--STSMRGWR---EVLRPAHAASAAFAMECDDCDARRLSVLQ----GLG 237

Query: 241 IALLPDYIVKDN 252
           IAL+PD+ V ++
Sbjct: 238 IALMPDWSVGED 249


>gi|87198501|ref|YP_495758.1| LysR family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134182|gb|ABD24924.1| transcriptional regulator, LysR family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 318

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 121/268 (45%), Gaps = 17/268 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF VV+   SFT AA +L  SQS++S  +  LE  +G+KL  R  R ++ TE G +L 
Sbjct: 9   LSVFLVVSEERSFTRAAVRLGTSQSAVSLAVRRLEEHLGLKLLARTTRSVSPTEAGEQLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    +      L     +P+G +RI T+    + LL   +   +  YPDI++++ 
Sbjct: 69  ATLKPSLGDIRDRLTSLTRLRARPAGLVRITTSRHAAETLLWPAVDAVMARYPDIEVEIS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    +I  D  D  +RL + ++   +  R    + M    AP YL+    P   ++L+
Sbjct: 129 IDGALTNIVADRFDAGVRLGESLEKDMVAVRIGPDLRMAVVCAPAYLEGREPPRGPRDLE 188

Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            H  I     T G+L       + W    D      R+   L VN     ++    G G+
Sbjct: 189 AHRCINLRMATRGNL-------YAWEFEKDGRALNVRVEGALIVNDAGIAVRAAKAGHGL 241

Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITP 265
           A  L  + +++D    NLVR++ED   P
Sbjct: 242 ACVLEDEGVLRDIEAGNLVRVLEDWCPP 269


>gi|89899286|ref|YP_521757.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344023|gb|ABD68226.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 294

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 9/254 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  +  F  AA+   +  S++SR+I+ LE  +G++L +R  R + LTE G  
Sbjct: 5   NDMALFVEVVNAKGFRGAADATGVPNSTVSRRIALLEKAIGLRLLHRTTRRVELTEAGRI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  +      +L E   +PSG LR +  +D     L   + EF   YP I+ +
Sbjct: 65  YYERCRRIVDEARIAHEQLGEMLAQPSGVLRASLPVDFASIYLAPIITEFAQHYPGIRFE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D+  +  D AIR+   +  S+LI R+L +I    +A+P YL    EP    +
Sbjct: 125 FDLTPRRVDLITEPFDVAIRVGD-LPDSTLIARQLASIKAEVFASPGYLAKAGEPQIPSD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L KH  + F    PK     +W+        +  +S   V N+     +   L  G+ LL
Sbjct: 184 LSKHECLGF----PKVE---HWVLQSGVHTEQVPVSGRYVLNNVGMFRRLATLDQGLILL 236

Query: 245 PDYIVKDNPNLVRI 258
           P  +V ++  L R+
Sbjct: 237 PRAVVAEDIQLGRL 250


>gi|15802212|ref|NP_288235.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 EDL933]
 gi|82543798|ref|YP_407745.1| transcriptional regulator LYSR-type [Shigella boydii Sb227]
 gi|168749371|ref|ZP_02774393.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168758108|ref|ZP_02783115.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168764256|ref|ZP_02789263.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168770771|ref|ZP_02795778.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168774886|ref|ZP_02799893.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168782230|ref|ZP_02807237.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|191168833|ref|ZP_03030607.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|195937487|ref|ZP_03082869.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EC4024]
 gi|208816738|ref|ZP_03257858.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208818719|ref|ZP_03259039.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|256018013|ref|ZP_05431878.1| putative transcriptional regulator LYSR-type [Shigella sp. D9]
 gi|261227705|ref|ZP_05941986.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258130|ref|ZP_05950663.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282979|ref|YP_003499797.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|293446171|ref|ZP_06662593.1| HTH-type transcriptional regulator yeaT [Escherichia coli B088]
 gi|331653203|ref|ZP_08354208.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
 gi|331673335|ref|ZP_08374103.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
 gi|331677675|ref|ZP_08378350.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332279050|ref|ZP_08391463.1| conserved hypothetical protein [Shigella sp. D9]
 gi|12515836|gb|AAG56788.1|AE005402_14 putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EDL933]
 gi|13361975|dbj|BAB35931.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. Sakai]
 gi|81245209|gb|ABB65917.1| putative transcriptional regulator LYSR-type [Shigella boydii
           Sb227]
 gi|187769471|gb|EDU33315.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188016319|gb|EDU54441.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|189000344|gb|EDU69330.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189355034|gb|EDU73453.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189360394|gb|EDU78813.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189365706|gb|EDU84122.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|190901113|gb|EDV60888.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|208731081|gb|EDZ79770.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208738842|gb|EDZ86524.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209768078|gb|ACI82351.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209768080|gb|ACI82352.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209768082|gb|ACI82353.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209768084|gb|ACI82354.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209768086|gb|ACI82355.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|290762852|gb|ADD56813.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323001|gb|EFE62429.1| HTH-type transcriptional regulator yeaT [Escherichia coli B088]
 gi|320183822|gb|EFW58655.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Shigella flexneri CDC 796-83]
 gi|320647010|gb|EFX15843.1| LysR family transcriptional regulator [Escherichia coli O157:H-
           str. 493-89]
 gi|320652292|gb|EFX20590.1| LysR family transcriptional regulator [Escherichia coli O157:H-
           str. H 2687]
 gi|320657893|gb|EFX25655.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658466|gb|EFX26160.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668364|gb|EFX35191.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. LSU-61]
 gi|331049301|gb|EGI21373.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
 gi|331069533|gb|EGI40920.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
 gi|331074135|gb|EGI45455.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332101402|gb|EGJ04748.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 314

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 15  NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 75  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 135 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 194 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 239

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 240 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298


>gi|15966670|ref|NP_387023.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15075942|emb|CAC47496.1| Transcription regulator LysR family [Sinorhizobium meliloti 1021]
          Length = 310

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++R F  VA  GS +  A +L + QS+++R +  LE  VG+ L  R  R + +T++GS+
Sbjct: 9   ERMRTFARVAERGSLSAVARELGVGQSTVTRHLRELEEAVGVPLLSRTTRRVMMTDEGSR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  + E+   +E    E++ +    +G +R++ T   G   +   +  F  L+P+I I 
Sbjct: 69  YYARSVEILRLVEQASDEVRGTRGAQAGTIRVSCTAAFGVLHVSRLIFAFQDLFPEIGID 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D AIRL  P+  SS+  + L        AAP YL     P + QE
Sbjct: 129 LSLSDERVDLVREGIDVAIRL-GPVSDSSMRMKALGQSRRLLVAAPAYLAERGRPATPQE 187

Query: 186 LDKHNLITFGDL-----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  H  I   ++     +     D  + A    P G      L+V+  L++ +  + G G
Sbjct: 188 LIGHEGIRMSNVSGSETLALQRRDGKYHAV---PFG----GRLRVDHGLAVREALIAGRG 240

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV 269
           I     ++V D     RI  + + P +++
Sbjct: 241 IVPAHRWLVGDLLEAGRI--EAVLPGYSL 267


>gi|84684720|ref|ZP_01012620.1| transcriptional regulator, LysR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667055|gb|EAQ13525.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 298

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 11/274 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD LR+F  VAR  S + A   L    +++ R++S LE  VG  LF R  +G  LT
Sbjct: 1   MDLDWDDLRIFLAVARGESLSAAGRVLKRDPATVGRRVSRLEEVVGAPLFARSPQGYGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L     E    +      L  ++   SG++RI         LL     +    +P
Sbjct: 61  DAGQRLLAHAEEAEQAVTRGAEALAGTTGGLSGQVRIGAPDGCANFLLPQVCAQIAAEHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++Q++   + I++S   AD AI +  P      +Q K+   H+H  AA  YLK     
Sbjct: 121 EIELQIVALPRVINLSKREADLAIAVSPPATGRLTVQ-KITDYHLHLVAARLYLKEHGPV 179

Query: 181 LSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            ++ +L+   ++ +   IP  +  ++ ++L+     IG  R++ L  NS    +     G
Sbjct: 180 ETLADLEGRPIVGY---IPDMIFDKELDYLSE----IGADRVT-LGSNSVSVQLGMLREG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC 272
            G+ +  D+ +    NL +++ D ++ + + Y  
Sbjct: 232 GGLGIAHDFALPFARNLRKVLTDEVSLTRSFYLV 265


>gi|317404172|gb|EFV84615.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 309

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 133/270 (49%), Gaps = 15/270 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +++F  +  +G+ + AA +  +++S +SR +  LE   G +L  R  R L LT +
Sbjct: 7   LDLNLIQLFVTIVEAGTLSEAALRQGVTRSHVSRNLQKLERAFGAQLIRRTTRRLELTHE 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGNLKEFLLLYPD 121
           GS L+   + +  ++E+ +  LQ+   +P+G +R++    LG+ ++L+  L  F L +P 
Sbjct: 67  GSVLYDHGARMAREVESARHALQKLGAEPTGHVRLSLPTGLGELDMLRPLLVRFALEHPS 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++  N+  D+     D A+R    +     + R+L  I  H  AAP YL     P 
Sbjct: 127 LSLRVLFSNRVSDLISSEIDVALRAIS-VPPQDYVARELGRIKWHLCAAPEYLARMGMPA 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVL 237
             ++L + + +  G   P+            R  G+P      + LQ   +  + Q    
Sbjct: 186 HPRDLGRFDFL--GPPGPRPQATLRL-----RGKGQPHEVKLATRLQSEYFPFLAQAARE 238

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSF 267
           G+G+ALLP YIV+ +    R+++  + P++
Sbjct: 239 GAGVALLPAYIVRPDLEAGRLLQ--VLPAY 266


>gi|160901057|ref|YP_001566639.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366641|gb|ABX38254.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 335

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 139/294 (47%), Gaps = 13/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +   GSF  A   L    S +S++++ LET +G++L  R  R L LT++G +
Sbjct: 10  DELAALVALHEQGSFAAAGRALLRHPSVLSKRLNALETRLGVRLVERSTRHLHLTDEGLR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    +   Q E  + + +  G+LR++    +G+  L   L EF L +P I ++
Sbjct: 70  LVDKVRQAAGLIADAQKEAAQGASQARGRLRLSLPAAMGRRWLSPLLAEFALAHPQIVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +DI  +  D A+R+ + +  S L+  +L        AAP YL+    P+  ++
Sbjct: 130 VEYADRFVDIVGERFDAAVRIGR-LADSRLVALRLGGHQRILGAAPAYLQAHGTPVHPED 188

Query: 186 LDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLG 238
           L  H  + F  L   P+  E  +   + D P G+ R + L     +S     ++   V+G
Sbjct: 189 LAAHRCLGFTGLQSFPQW-ELVHGGTSGDVPQGQARHTVLVRGPMVSNDSEALLTAAVMG 247

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRN 288
            GI    D+++ ++     LVR++    +  +  +YF  P A  ++  + A R+
Sbjct: 248 VGILAGGDWLMSEHMAAGRLVRVLPQWRLDGASGIYFVRPSAAFSSAAMTALRD 301


>gi|70731612|ref|YP_261353.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345911|gb|AAY93517.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 316

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 119/251 (47%), Gaps = 10/251 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V  +GSF+ AA +  L+ S+++R+I  LE  VG  LF R    +  T  G  
Sbjct: 8   EQLGLFLDVLEAGSFSAAARRHPLTPSAVARRIDSLENAVGTTLFMRTTHAVVATAAGQA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L+  + E    S  P G +RI      G+  L   + +FL+LYP + +Q
Sbjct: 68  FAERARRIVAELQLARAEAVSLSHAPEGLIRIDAPAAFGRRHLAPAIADFLVLYPGLDVQ 127

Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+   +    D  +R  + +  + ++   L +I   A A+P YLK+   P  
Sbjct: 128 LHLIDSFVDMQGSHLGKVDLVLRAGQRVD-TRMVATSLASIVRIACASPSYLKSRGTPSH 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSG 240
             EL +H+ + +  L P     F W   +D  +    P+   L  N+  +++   + G G
Sbjct: 187 PAELSQHDGLDWDGLAPL----FAWRFELDGQVQSHRPQRIRLGANNAEALLSGALAGLG 242

Query: 241 IALLPDYIVKD 251
           IA LP ++V +
Sbjct: 243 IAHLPTWLVSE 253


>gi|330821761|ref|YP_004350623.1| transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373756|gb|AEA65111.1| transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 303

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 19/299 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   + +F  V RSGSF  AA  L L+++ +S  +  LE+ +G+ L  R  R  +LT  G
Sbjct: 10  DLRGMAIFATVVRSGSFAAAARSLGLTRAVVSHHVRVLESRLGVPLAQRSTRSFSLTPAG 69

Query: 64  S--KLH--RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
              ++H  R+  E    + + ++   E    P G++R+  +   G   +   L  F   Y
Sbjct: 70  QAFRVHCERLLDEAVDGIRSMELLRDE----PRGEVRLTCSHHFGTKRILPALVGFRRRY 125

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++ + + + ++DI     + A+R   P+  S+L  R L+       AAP YL+    
Sbjct: 126 PAVRLHVAMSDANVDIVQQGVELAVRA-GPLADSALHARPLLREATMLCAAPAYLRRHGA 184

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S  +L  H  + +    P        +A  D  +  P    +  +S  S + + + G 
Sbjct: 185 PASADDLVAHRWVVYP---PGQRATRVRVAGHD--VDVPVQGDVVTDSAASRLAFVLAGD 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA LP Y       +  LVR++ +V T    ++  + + +  + +L   R+F+   AR
Sbjct: 240 GIARLPAYDAASLIASGELVRVLPEVQTAPLEIFLVHSKRIGPSARL--LRDFLLETAR 296


>gi|293604952|ref|ZP_06687349.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292816780|gb|EFF75864.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 301

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 121/274 (44%), Gaps = 21/274 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA++ SF+ AA  L + +S++SRQ++ LE  VG++L  R  R + LT+ G    
Sbjct: 1   MELFVEVAKTRSFSRAAATLGVPKSTLSRQVAELEKSVGLRLLSRTTRKVELTDAGRLYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +    ELQ+    P+G LR+    D G + L  +  EF   YPD+   L 
Sbjct: 61  ERCQRIVAEAQIAHEELQKLVDTPAGPLRVNMPADFGTDFLAESFMEFSRRYPDVTFFLD 120

Query: 128 LDNKD--------IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           L N D         DIS++  D        +  S+ I R L  +  H YA+  YL    E
Sbjct: 121 LANPDHASRVFQTCDISIEIGD--------LPDSTQIARLLGMLPAHLYASHDYLDKHGE 172

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P    +L +H  I F            W L+  D+ I     +   VN      +  +LG
Sbjct: 173 PKHPSDLTRHECIEF--RAEGAGRVTRWPLSNGDQHIEFTPGNRFSVNGVAMARRLAMLG 230

Query: 239 SGIALL--PDYIVKDNPNLVRIMEDVITPSFTVY 270
           +GIA+L       + +  L R++ D     F VY
Sbjct: 231 AGIAVLVGGQTAEQQSGQLRRVLPDWQLGPFPVY 264


>gi|254439800|ref|ZP_05053294.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198255246|gb|EDY79560.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 296

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 134/287 (46%), Gaps = 16/287 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  LR F   A + S + AA +L L+Q ++SRQ++ LE  + + LF R  RGL LT+ 
Sbjct: 8   LDWTHLRSFLATAETASLSAAARKLGLTQPTLSRQVAALEDNLSLLLFERVGRGLQLTDA 67

Query: 63  GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G +L     ++    H++  T    Q S +  +G +RI  +       L   + E     
Sbjct: 68  GRELLAHVQDMGGAAHRVAMTAAA-QRSDI--NGTVRITASDIYSSTYLPKMIVEVRKRA 124

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + ++++  N   D+    AD AIR  +P Q   L+ R +     H YAA  YL     
Sbjct: 125 PGLVVEVVATNDISDLMRREADIAIRHVRPEQ-PDLVARLVREATGHFYAAKIYLDRRGR 183

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  EL  H+ I++GD I + +E   +L  +D P+        +V S   I+ + +  +
Sbjct: 184 PQTRTELGTHDWISYGD-IGQMVE---YLVALDIPL---TADAFKVGSQNGIVAWEMARA 236

Query: 240 GIALLP-DYIVKDN-PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G+ + P D  V D    + RIM D +   F V+      +  + +++
Sbjct: 237 GLGICPMDDTVGDQVEEMERIMGDDLKVMFPVWLVTHREVHTSPRIR 283


>gi|163857040|ref|YP_001631338.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163260768|emb|CAP43070.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 306

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 129/292 (44%), Gaps = 21/292 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F V AR  SFT AA++L ++Q ++S+Q+  LE+ +G++LF R  +GL LTE G    
Sbjct: 11  LQAFEVAARHSSFTRAAQELCVTQGAVSKQVKHLESFLGVELFLRIRQGLVLTEAGQSYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +       ++E   +EL     +  G L +      G   L   L  F+ + PDI ++ +
Sbjct: 71  KKIQAGLGQIEAATVELIAHQGQ-GGTLHLTCMPTFGARWLIPRLATFMRVRPDIHVEFL 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKN-CREPLS 182
              +  D S    D A+R    I   S    ++ R +V +      +P  L + C+   S
Sbjct: 130 PHRQGYDFSTPELDAAVRFGDGIWPGSGADYIVGRDIVPV-----CSPRLLGDGCQ---S 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL ++ L+     +    + F       R      +   + + Y  + Q    G GIA
Sbjct: 182 ADELLRYPLLHHTSALEGWRDWFEQAGCDTRRA----LEGARFDQYSLLSQAAAAGFGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L+P  +++D   +  L   +   I      Y CYPE   N   L+AFR ++ 
Sbjct: 238 LIPRCLIEDELRDGKLAVALRLPIRARQGYYLCYPEQKANLPILQAFRAWLM 289


>gi|114705739|ref|ZP_01438642.1| transcriptional regulator, LysR family protein [Fulvimarina pelagi
           HTCC2506]
 gi|114538585|gb|EAU41706.1| transcriptional regulator, LysR family protein [Fulvimarina pelagi
           HTCC2506]
          Length = 342

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 135/298 (45%), Gaps = 15/298 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+ +R+   +A +GS   AA +L    S++ R++  +E   G  LF R  + LT T 
Sbjct: 33  TLTWEDIRLVGAIAETGSLPEAAARLGTHHSTVFRRLRQVEAGTGCPLFERTGQRLTPTA 92

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++  +   +   ++ T +++      PSG+LR+ T   L Q+LL     +F    PD
Sbjct: 93  LGEEIAALADRIGSDVDRTAMKMAGREALPSGELRVTTADSLLQHLLTPIFADFQKACPD 152

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI +++ N+ +++S   AD AIR        +L+ R+L  +    Y       +   P 
Sbjct: 153 VQIDIVVANQALNLSKRDADVAIRASDS-PPETLVGRRLARVAWALYG----RADTASPW 207

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              + +  H+ +  GD +       + + T       P     +V++ L +      G G
Sbjct: 208 PGGDANADHDWVALGDGMAAMGVVRHAVETA-----APGRLRYRVDTVLGLASAIEAGIG 262

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  LP +I   +P LVR+  +   P+F   ++    E L+   +++ F +F+    R+
Sbjct: 263 IGHLPCFIGDRSPVLVRL--EPPEPAFAADLWLLTHEDLRRAARVRVFLDFVAYAVRE 318


>gi|293395436|ref|ZP_06639720.1| glycine cleavage system transcriptional activator [Serratia
           odorifera DSM 4582]
 gi|291422120|gb|EFE95365.1| glycine cleavage system transcriptional activator [Serratia
           odorifera DSM 4582]
          Length = 301

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 136/291 (46%), Gaps = 19/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V  R  +FT AA +L ++QS++S Q+  LE   G++LF R  + L+LT  G+ L 
Sbjct: 10  LRAFEVATRHTTFTSAAAELFITQSAVSHQLKKLEEIWGLQLFQR-GKNLSLTPAGAALA 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  E + KLETT  +L+E   K   +LR+ TT       L   L E   L+P+I + L 
Sbjct: 69  PLVREFFSKLETTLADLREQ--KGRVRLRVNTTYSFALKWLLPRLPELARLHPEILVTLE 126

Query: 128 LDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             ++ I+ +   AD AIR      P   +  + R+     +   A+P  L+    P    
Sbjct: 127 STDQAINFASTDADVAIRFGHGNYPALHTEFMFRE----QLFPVASPALLQRFGTPREPA 182

Query: 185 ELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL ++ L+T    DL+PK    F  L  ++  +    +     N     ++  +LG GIA
Sbjct: 183 ELLRYPLLTRDGADLVPKWDVWFK-LVGINTEVLHESVRFADTN---MTIEAALLGQGIA 238

Query: 243 LL-PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L    ++ K+     LVR+           YF  P+ ++    +  FR+++
Sbjct: 239 LARSGHVEKELGEGTLVRLFAVPFPSPAAYYFVCPQGIETRPHIVKFRSWL 289


>gi|167623093|ref|YP_001673387.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167353115|gb|ABZ75728.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 313

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    E     +   +    G L++  +   G   +   L EF+  +P++++Q
Sbjct: 66  LYTQGEELLRDAEQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMAKHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y++   EP   ++
Sbjct: 126 VSLLDHKVDVVNEGLDLLLTMSEQL-PLGMVARPLMKCQFLLAASPSYVEKHGEPSRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    V G G+  L
Sbjct: 185 LVDHNCLVYQG---EWHEHSIWQFKQGDDFCEIGVSGNFRVDNAPALKSAAVSGLGVVYL 241

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV IM+D  +T    +   YP       K+ AF +FI
Sbjct: 242 ASYLLEDELEKGTLVPIMQDWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|134278949|ref|ZP_01765662.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|134249368|gb|EBA49449.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 336

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L
Sbjct: 66  LLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L
Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H  +T   L         WL  ++ P G   I     +Q N+  S+      G GI +
Sbjct: 186 ARHACLT---LRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   ++    NLV ++         VY  YP            R FI  K R W
Sbjct: 241 LPLYAAIEDLRCGNLVLVLPAHRLQKMNVYALYPS-----------RRFIDAKVRTW 286


>gi|292489724|ref|YP_003532614.1| putative RuBisCO transcriptional regulator [Erwinia amylovora
           CFBP1430]
 gi|292898068|ref|YP_003537437.1| LysR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291197916|emb|CBJ45017.1| LysR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291555161|emb|CBA23351.1| probable RuBisCO transcriptional regulator [Erwinia amylovora
           CFBP1430]
          Length = 302

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 4/198 (2%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M    D+LR    F     SGSFT AA +LHL+ S++S+ I+ LE  +G +LF R  R L
Sbjct: 1   MPVSEDRLRGITPFVASVESGSFTAAAGRLHLTCSAVSKSIARLEARLGSRLFERTTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G   +   + V  +L   +  L      P G+LR+A     G+  +   L +F  
Sbjct: 61  VLTDAGQAFYDTCARVLGELAEAESVLAAQRSMPVGRLRVAVPHTFGRLHVMPLLNDFCR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN 176
            +P++Q+ L   ++ +D+  +  D A+R+  P     SL  R L +  +   AAP YL  
Sbjct: 121 QHPEMQLNLSFSDRFVDLFEEGIDVAVRIGGPGNYPPSLGVRYLGSERLIFCAAPDYLAQ 180

Query: 177 CREPLSIQELDKHNLITF 194
              P S+ +L++H  I +
Sbjct: 181 HGIPQSLAQLEQHKAIVY 198


>gi|330860517|emb|CBX70820.1| putative HTH-type transcriptional regulator ltrA [Yersinia
           enterocolitica W22703]
          Length = 310

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 140/299 (46%), Gaps = 14/299 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++ +F  V  +GSF+  A QL +S S+ISR +S LE  +  +L  R  R L L+E G +
Sbjct: 11  SEMAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGEE 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + +  + + +   +      + S +P G +R++    +G+ ++  ++ EFL  Y  I +Q
Sbjct: 71  VFKRCNAMLNAANSVMEISGQYSQEPEGLIRVSVPKAVGRFVVHPHIPEFLQRYSKIDVQ 130

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           LILD++ +D   +  D  IR+  +P     ++ R+L+ I     A P YL     PL   
Sbjct: 131 LILDDRYVDFIDENVDLVIRITNQP--PPGMVGRQLMNIEHLLCATPEYLSAQGTPLYPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIAL 243
           +L +H+ I  G+        F           + R +       L +++Q+  +GS    
Sbjct: 189 DLAQHSCIYLGETPGDARWKFRQGTKAITVAVKGRYAANHTGVRLDAVLQHIGIGS---- 244

Query: 244 LPDYIVK---DNPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LP +  +       LV+++ +   + + S  ++  YP       KL+ F ++I  + RD
Sbjct: 245 LPYFTARTALQQGQLVQVLPEWRFISSYSGGLWLIYPPTRYLPAKLRVFIDYIVGRLRD 303


>gi|156977860|ref|YP_001448766.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156529454|gb|ABU74539.1| hypothetical protein VIBHAR_06651 [Vibrio harveyi ATCC BAA-1116]
          Length = 309

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 139/291 (47%), Gaps = 11/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G  
Sbjct: 5   NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I+
Sbjct: 65  FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIELYPNVSIK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+     D AIR  +P  S+ ++            A+P Y+ +  E    ++
Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGANERILCASPEYVASNPELTKPED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVLGSGIA- 242
           L +HN + F  ++   + +  W  T +    +  +S   L  +S LS  +  + G GIA 
Sbjct: 185 LHQHNCLCF--MVADSVYN-KWTLTREGETEQVVVSGKLLSNDSDLS-HRLAIKGKGIAN 240

Query: 243 -LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             L D I +D     LVR++ +    S  +Y    +    T  ++ FR+FI
Sbjct: 241 KSLMD-ISQDLIEGRLVRVLPEWDCGSVPLYMVCADRRLLTPTIRTFRDFI 290


>gi|189352738|ref|YP_001948365.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189336760|dbj|BAG45829.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 320

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 129/289 (44%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  A G TLT 
Sbjct: 12  LNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEASLGTLLFDKSRAEGFTLTA 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P 
Sbjct: 72  EGQRLVAYADAMETTVQSACDQVAHTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHPR 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+     + ++   AD A+ L +P +    +  KL    +  YA   YL +     
Sbjct: 132 VTVDLLPVPHFVSLTKREADLAVTLERP-ERGPYVCTKLCDYQLRLYATRDYLASHPPIA 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I++ D +    E       V       R + +   S+ ++      G G+
Sbjct: 191 GTDDLARHTFISYVDDLAFSSELLYLERAVPGATAGLRTTSVIAQSFAALH-----GGGL 245

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I    P LV ++ D +  +   +    E L+   ++ A  +++
Sbjct: 246 AILPCFIAAAQPALVPVLPDQVVVTRCFWLTCREDLRKLRRVTALWDYL 294


>gi|170721548|ref|YP_001749236.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759551|gb|ACA72867.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 306

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 130/295 (44%), Gaps = 14/295 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F + A   SFT AA +  ++ +++SR ++ LE  +G++LF R  R + L+E G   +
Sbjct: 13  LELFCLAAERSSFTAAATEAGVTPAAVSRSVARLEERLGVRLFVRTTRLMRLSEAGQAYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   + ++      PSG+LRI+         L   L  F   YP +Q+ + 
Sbjct: 73  LQCRQALGQLVEAERQVSGGQAMPSGRLRISAPTPYAHYRLLPLLPHFRQRYPQVQVDVH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+++D + ++ D AIR R+P   S L+ R+L    +   A P YL     P   ++L 
Sbjct: 133 VSNRNVDFAEEHFDLAIRGREPA-DSRLVVRRLENAELVVVATPAYLARMGTPHVPEDLA 191

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H  I F     G   P           ++   G    +CL    +L+       G G+ 
Sbjct: 192 GHECIQFELASTGRRPPWRFRREGRELELETQGG---FTCL--GDFLATATLVRHGGGLM 246

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               + V+   D+  LV ++      S      YP+A     +++ F +F+F + 
Sbjct: 247 QAYRFTVQDALDSGELVEVLTAYGGTSQPFMLIYPQARHMPLRVRLFIDFLFAEG 301


>gi|186472990|ref|YP_001860332.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195322|gb|ACC73286.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 289

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 118/272 (43%), Gaps = 11/272 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW  +R+F  +AR G+   AA QL  +Q ++ R++  LE  +G  LF R   G  LT+
Sbjct: 5   NLDWSDVRIFLAIARCGTLGAAARQLRQTQPTMGRRLRALEEALGHTLFQRTTEGFVLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  +      +          L  S  + +G LR++++   G ++L      FL  +P 
Sbjct: 65  EGRSVLSYAERMEEDAHAFMRSLAGSEQELTGNLRVSSSDWYGIHVLTPVFAAFLARHPR 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             I+LI D++  +++   AD   R+  P     ++QRKL+ I    Y     +   R   
Sbjct: 125 TSIELITDSRRYNLARREADLVFRI-TPFDEPDVVQRKLMHIDYALYGRIDLVAPVRGDG 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q L   +   FG+L      D  W+  +   +    I+    N  +   + C  G G 
Sbjct: 184 AGQSLITMD-SAFGEL-----PDVTWIRQM---LPNAHIAYASNNRGVQ-ARMCAQGGGF 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           A+LP  +  + P L RI      P   V+  Y
Sbjct: 234 AVLPCPLGDNTPGLRRIDLGDAPPGRDVWLGY 265


>gi|104783326|ref|YP_609824.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95112313|emb|CAK17040.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 303

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 16/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L  R  R L+LT  G +
Sbjct: 5   NAMRVFVTVVDLGSQSAAADHLELSRPVVSRYLAELEDWVGARLMQRTTRKLSLTAAGLE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++       Q  +++    P G+LRI+ +   GQ  L   L  ++  YP ++++
Sbjct: 65  TLPRCRQLLELAGDLQNAVRQPDDAPRGELRISVSTSFGQAQLVDALAAYVKRYPGVKVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  +  D AIR    +   +LI R+L        A+P YL+    P  ++E
Sbjct: 125 LQMLDRTVNLVDERIDLAIRTSNDV-DPNLIARRLSVCRSVICASPAYLREHGTPQRVEE 183

Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  HN +T   FG  +        W   V+ + +  P    +  N  +++ +  +  +GI
Sbjct: 184 LSGHNCLTHAYFGHSL--------WHFEVNGQSVTVPVQGNISANEAMTLQKAALASAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP Y       +  LVR++ +       +   Y         L++  +F+
Sbjct: 236 AMLPTYQAAPALRSGELVRLLPEARPRELNLNAVYTSRKHMPATLRSMLDFL 287


>gi|227818871|ref|YP_002822842.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36959130|gb|AAQ87555.1| Transcriptional regulators, LysR family [Sinorhizobium fredii
           NGR234]
 gi|227337870|gb|ACP22089.1| putative LysR, transcriptional regulator [Sinorhizobium fredii
           NGR234]
          Length = 305

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 128/288 (44%), Gaps = 8/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  ++VF  V  SG F  AA+ LH+S  S++R I+ LE ++G +L  R  R L LT  G 
Sbjct: 4   WQAMQVFVQVVESGGFAPAAKMLHMSPPSVTRAIAKLEEQIGTRLLVRTTRSLKLTAAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  ++   +     S + P+G L +      G+  +   + EFL  YP +Q+
Sbjct: 64  GYVADCRRILAEIAEAEANAAGSFIHPAGLLTVTAPALFGRIHVLPVILEFLDRYPSMQV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +  ++  ++  +  D A+R+   + +S LI R++ ++     A+P Y     EP   Q
Sbjct: 124 KTVFVDRVTNLVEEGLDVAVRI-AALPASGLIARRVGSVRQVLCASPGYFARFGEPEIPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H +I    L       F    ++  PI  PR+ C   N+    +   V G G++  
Sbjct: 183 DLIHHRIIGRDGLFGHSEWLFGRDNSIRVPI-SPRLIC---NTNDVAIAAAVAGWGLSRF 238

Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y V       R   ++ D       ++  + E    + +++AF +F
Sbjct: 239 QSYQVAPEIEAGRLKVVLADYEREPVPIHIVHAEGRMVSARVRAFVDF 286


>gi|269103637|ref|ZP_06156334.1| putative transcriptional regulator LysR family [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163535|gb|EEZ42031.1| putative transcriptional regulator LysR family [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 305

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 130/304 (42%), Gaps = 35/304 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR    +A+ GSF  AA+ L +  +++SR++  LE  +G +L  R +R + LT  G  
Sbjct: 11  DDLRTLIAIAKHGSFRSAAQALDIPPTTLSRRLQRLEDTLGSQLVLRDSRNVALTPLGQN 70

Query: 66  LHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +  +LE   +EL + S  +P G LRI+  + L    L     EFL LYP++ +
Sbjct: 71  YVERCEPLIKELEVATLELDDISHSEPRGALRISAPVGLLTYKLMPLFNEFLSLYPEVTL 130

Query: 125 QLI-LDNKDIDISMDYADCAIRLRKPIQSS------SLIQRKLVTIHMHAYAAPHYLKNC 177
            L  L N+  D S +  D   R+     SS         QR LV       A+P YL   
Sbjct: 131 SLNHLSNQHHDYSPEQYDVVFRVGHQPDSSFAAATIGQSQRILV-------ASPCYLAKN 183

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-------- 229
             P    +L +H  +         + +F W    D     P    L VNS +        
Sbjct: 184 DTPQHPNDLYQHERLA-------TVPEFEWALRHDDIQQHP--DTLWVNSPVRLAIADLN 234

Query: 230 SIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           S+ Q  + G GIA LP+Y+V D      L  +M D  +PS  +Y  Y         +  F
Sbjct: 235 SVKQAAIAGLGIACLPNYVVADALQRGALKTLMTDWYSPSRPIYMLYQRLEYTPAHISCF 294

Query: 287 RNFI 290
            +F+
Sbjct: 295 IDFM 298


>gi|262368677|ref|ZP_06062006.1| LysR substrate binding domain-containing protein [Acinetobacter
           johnsonii SH046]
 gi|262316355|gb|EEY97393.1| LysR substrate binding domain-containing protein [Acinetobacter
           johnsonii SH046]
          Length = 309

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 129/272 (47%), Gaps = 9/272 (3%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L LTE 
Sbjct: 3   DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLEQEMEVVLLHRSTRKLNLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+    E  +I + E      G+LRIATT +LG N +   L  ++  +  +
Sbjct: 63  GQAFFHSCQEMLAAAERGKIRINELRDDLVGELRIATTPELGANHVIPALSHWMSAHRGL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I +  DN  +D+     D A+R+   +   S+    L  +     A+P YL N   P+S
Sbjct: 123 SIHIEADNHYVDLMNGRIDIALRMSPTVDDQSVHVVPLAHVEQILVASPSYL-NQSAPIS 181

Query: 183 -IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H+LI    +      DF  + T D    E + S +  N+ L     C  G G+
Sbjct: 182 RPEDLKNHDLIPITIMKNNHDFDFKNVVTGDAVKLEMK-SRVASNNILVTKTLCQHGHGV 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVY 270
           A +    V+    N +LV ++ +   P+FT+Y
Sbjct: 241 ARILYLDVQKELVNGSLVEVLPEWKLPNFTLY 272


>gi|239994400|ref|ZP_04714924.1| LysR family transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 296

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF   A+SGSF  AA+ + +S  +++R I+ LE ++  +LF+R  R + L+E G    
Sbjct: 1   MRVFAEAAKSGSFVGAADAMSMSAPAVTRCIAHLEAQLNTRLFHRTTRQVKLSEVGEHYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +   +E ++  +    + P G+L I   I  G+  +   + +FL  YPDI++   
Sbjct: 61  IHVSRILADIEQSEAAVSGIDLVPRGELNITAPILFGERYVTPIISQFLKDYPDIRVNGH 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +++     D AIR+  P + SSL    +  +     AAP YL +       ++L 
Sbjct: 121 FHDDVVNLIDSNMDVAIRIGNP-KDSSLYGVTVGYVRRVTCAAPSYLASSPAIKKPEDLK 179

Query: 188 KHNLITFGDLIPKCM-EDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H++     L PK   E   W    + RPI        Q N   + +   + G G+  L 
Sbjct: 180 RHSV-----LYPKRFNEPAVWTYHKNGRPIAIKLTPRFQSNQNRAAINAAIAGVGVVRLM 234

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y V +   + +LV ++EDV      +     E  KN  K+K F +++
Sbjct: 235 SYQVAEALRSGDLVSLLEDVEDKKLPIQVVSVEGRKNLTKVKMFIDYV 282


>gi|221212620|ref|ZP_03585597.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221167719|gb|EEE00189.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 320

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  A G TLT 
Sbjct: 12  LNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEASLGTLLFDKSRAEGFTLTA 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P 
Sbjct: 72  EGQRLVAYADAMETTVQSACDQVAHTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHPR 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+     + ++   AD A+ L +P +    +  KL    +  YA   YL       
Sbjct: 132 VTVDLLPVPHFVSLTKREADLAVTLERP-ERGPYVCTKLCDYQLRLYATRDYLATHPPIA 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I++ D +    E       V       R + +   S+ ++      G G+
Sbjct: 191 GTDDLARHTFISYVDDLAFSSELLYLERAVPGATAGLRTTSVIAQSFAALH-----GGGL 245

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I    P LV ++ D I  +   +    E L+   ++ A  +++
Sbjct: 246 AILPCFIAAAQPALVPVLPDQIVVTRCFWLTCREDLRKLRRVTALWDYL 294


>gi|160896115|ref|YP_001561697.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361699|gb|ABX33312.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 324

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 125/283 (44%), Gaps = 17/283 (6%)

Query: 6   DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+ F     VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R ++LT +
Sbjct: 15  DKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLMVRTTRRISLTHE 74

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS        +   +   +  +    VK +G LRI      G+  +   +  F  L+PD+
Sbjct: 75  GSAFLEDCQRLLSDVSNAEASVSAGGVKATGHLRITAPAGFGRRHVAPLVPLFRDLHPDV 134

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L ++ +D++ +  DCA+R+   +  S+L+  ++        A P YL+    P  
Sbjct: 135 TISLNLSDRVVDLAGEGFDCAVRVGD-LPDSALVSVRIADNRRQCVATPAYLERRGTPRH 193

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLS------IMQYC 235
             EL +H+ +T   L     +   W   +  P  G   +   +    L       +  +C
Sbjct: 194 PSELTQHDCLT---LSSDASQTRGWAFRIPHPDSGTSEVVHFKPGGPLDCSDGQVLHDWC 250

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           + G GIA    + V+    +  LV ++E    P   ++  +P+
Sbjct: 251 LGGWGIAWRSTWEVEAEITSGRLVAVLETFAAPPNGIFVVFPQ 293


>gi|73538510|ref|YP_298877.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72121847|gb|AAZ64033.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 318

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 18/300 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +  +  V   G  + AA ++ LS+S IS++IS LE E+G+ L  R  R    +
Sbjct: 1   MSLRTEDIEAYLHVVELGGISAAARRMGLSKSVISKRISDLERELGVSLLQRSTRSTRPS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +        +L+     + +++ +  G+LR+   +  G   L   +  F   +P
Sbjct: 61  ENGCYFYEQARAALRQLDHAAQTVSDAAGELRGELRVLAPMTFGTRWLSPLIAAFARAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L LD+K +D+  +  D AIR+ + +  SSLI R+L         +P Y      P
Sbjct: 121 RMNLILELDDKLVDVGYERYDVAIRITR-LGDSSLIARRLTVSRRVLCCSPEYAARAGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYC 235
             I+++ +H  + + +  P  +  F   A  D     R I  PR      N+   +    
Sbjct: 180 QGIEDIAQHACLAYSNSPPAHVWAF---AAGDEHGSVRSIA-PR-GVFTANNGEVLRDAA 234

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
           + G G+A+LP +IV D+ +  R++E  + P        ++  YP +   + KL+    ++
Sbjct: 235 LAGQGLAVLPRFIVWDDLHAGRLVE--VLPHLPPVDDGIFAVYPRSGFGSVKLRTLVQYL 292


>gi|270263276|ref|ZP_06191546.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042964|gb|EFA16058.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 303

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 112/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVECGSFTAAARQLDMSVSSISQTVSKLENELQVKLLNRSTRRIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  ++     +L   +  P+G LRI ++  + QN+L     + L  YP + + L
Sbjct: 66  YQGCRRMLQEVSEVHEQLYAFNNTPTGTLRIGSSSTMAQNVLATMTADMLKEYPGLTVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR    +Q SSL  ++L ++ M   AA  YL     P      
Sbjct: 126 VTGIPAPDLIADGLDVVIRT-GALQDSSLFSKRLGSMPMVICAAKSYLSQHGTPQK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISC---LQVNSYLSIMQ 233
                       P  M +F+WL    RP  E           RIS       N   ++++
Sbjct: 181 ------------PSDMVNFSWLEYSVRPDSEFELIAPEGITTRISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKAGAGIAYAP 240


>gi|221196789|ref|ZP_03569836.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203458|ref|ZP_03576477.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221177392|gb|EEE09820.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183343|gb|EEE15743.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 337

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 128/289 (44%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  A G TLT 
Sbjct: 29  LNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEASLGTLLFDKSRAEGFTLTA 88

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P 
Sbjct: 89  EGQRLVAYADAMETTVQSACDQVAHTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHPR 148

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+     + ++   AD A+ L +P +    +  KL    +  YA   YL       
Sbjct: 149 VTVDLLPVPHFVSLTKREADLAVTLERP-ERGPYVSTKLCDYQLRLYATRDYLATHPPIA 207

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I++ D +    E       V       R + +   S+ ++      G G+
Sbjct: 208 GTDDLARHTFISYVDDLAFSSELLYLERAVPGATAGLRTTSVIAQSFAALH-----GGGL 262

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I    P LV ++ D +  +   +    E L+   ++ A  +++
Sbjct: 263 AILPCFIAAAQPALVPVLPDEVVVTRCFWLTCREDLRKLRRVTALWDYL 311


>gi|254523593|ref|ZP_05135648.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721184|gb|EED39709.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 297

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 133/283 (46%), Gaps = 14/283 (4%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           +A  GS T AAE L +S++ ++R ++ +E  +G +L +R  R ++LT  G        ++
Sbjct: 1   MAERGSLTAAAEVLDMSRAMVTRYLAEVEGWLGARLLHRTTRRVSLTGPGEAALARFRQM 60

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
               E  Q EL     +P G LR+  ++  GQ+ L   +  F+  +P  +I+L+L ++ +
Sbjct: 61  LEIGEALQGELASDDPEPHGTLRVTASVSFGQSHLARAVAGFVARHPAARIELLLVDRTV 120

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           ++  +  D A+R+ + I   SLI R+L T      A P YL+    P + + L  HN +T
Sbjct: 121 NLVEERVDLAVRIARQID-PSLIARRLATCRSVLCATPSYLQAHGTPTAPEHLAAHNCLT 179

Query: 194 ---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
               G  + +   D   L+     +G      +  N    +++    G+GIA+LP Y V 
Sbjct: 180 HHYVGKSLWQLHRDGRSLSVA---VG----GNISANEASLLLEAVRAGAGIAMLPTYQVA 232

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               +  L+ ++ +       ++  Y    +    ++ F +++
Sbjct: 233 PLLRSGELIELLPEFGLDELGIHAVYASRRQQPAIMRRFLDYL 275


>gi|254467629|ref|ZP_05081038.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206684377|gb|EDZ44861.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 305

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 10/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  + LRVF  V   GS T     L L+ +  S++I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LESLRVFTRVVELGSITSGGRDLRLTPAVASKRIKELEKHLGVRLFNRTTRSLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    +V   +E  +  + + S  P G +R+   + +G+ ++   +  F+  YP
Sbjct: 60  EAGQLFYTEAKKVLESIEDAEAVVSQFSAVPRGVIRVTAPLGVGRRIIAPLVPGFVEAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
             +I++ + ++ +DI  D  D A  +  P   S+L  RK+        AAP YL+    P
Sbjct: 120 ATEIRMRMSDRKVDILADGLDVAFFIGTP-HDSTLKMRKIADCARVLCAAPQYLERHGTP 178

Query: 181 LSIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              ++ L  HN +      P+  E +  LAT + P           +    +  + + G 
Sbjct: 179 QVPEDLLSGHNCLLL--RYPRSPEYYWTLATPEGPRKLDVSGKYDADDSDVLTGWALDGR 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNF 289
           GI   P + V     +  LV ++ D   P  TV+ C YP       K++ F ++
Sbjct: 237 GIVNKPRFDVAAHLRSGALVEVLPDT-PPEPTVFGCLYPHRKLQDPKIRLFVDY 289


>gi|13471829|ref|NP_103396.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022573|dbj|BAB49182.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 297

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 134/283 (47%), Gaps = 20/283 (7%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LHRVTSEVYHKL 77
           SFT AA ++    + +SR++  LE  +G++L +R  R ++LTE G++ L RV + +    
Sbjct: 12  SFTRAAVRVGRDATILSRRLQSLEERLGVRLLHRTTRSVSLTEAGAEFLVRVRAILASVD 71

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E        +   P G LR+A     G+  +   L +FL  +PDI+I+    N+  D+  
Sbjct: 72  EAEAAASAHADGSPRGLLRLALPGTFGRMWIGPLLPQFLAEFPDIRIEAEFSNRFADLVA 131

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           +  D A+RL   ++ S L+ RK+ T      AAP YL     P + Q L +H+ + F   
Sbjct: 132 ENFDVAVRL-GALEDSRLVARKVATRRRLLCAAPAYLARRGRPDTPQALLEHSCLGF--- 187

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGIALLPDYIVK- 250
                + F      DR   E R + ++V+  L       +++  V G G+ +  D+++  
Sbjct: 188 --SGFQTFPAWEMTDR---EGRRARVEVSGPLVSDDAEVLVEAAVQGLGLMMSTDWLIGR 242

Query: 251 --DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  LV ++E+  +     VY   P A     K +AF ++I
Sbjct: 243 ELADGRLVPVLEEWTLADEGAVYVVLPSAKGQAAKTRAFADWI 285


>gi|167033025|ref|YP_001668256.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859513|gb|ABY97920.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 296

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 7/247 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  VA  GS + AA  L+L+ S++SR ++  E  +G +L  R  R +TLT +G   
Sbjct: 9   EMEVFARVAHEGSLSAAARALNLTPSAVSRILARTEQRLGTRLLLRTTRAITLTPEGEAY 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    V   +   +  + +  V P G+LR++  +   +  +   L  F   YP + + L
Sbjct: 69  LRGARRVLADMLEVEEAITDQGV-PRGRLRVSAALGHARLTVVPLLAAFSARYPQVLVDL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  DI    AD A+R    +  SSL  R +        A+P YL+ C  PL  ++L
Sbjct: 128 TLSDEVADILGGQADVALRFGH-LPDSSLSARTIGETGQVVVASPDYLQRCGTPLEPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + F     +   D  W    D      R++  ++ +S  ++ Q   LG+GIA + 
Sbjct: 187 ARHNCLRFN--FRRAAPD--WPFRRDGQTFSLRVAGNIECSSGEALAQLARLGAGIARIG 242

Query: 246 DYIVKDN 252
            + V D+
Sbjct: 243 TFTVVDD 249


>gi|182678802|ref|YP_001832948.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634685|gb|ACB95459.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 294

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 131/290 (45%), Gaps = 15/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF+ AA   ++ Q ++S+ I+ LE  +G++L  R  RGL  TE G   +
Sbjct: 7   IETFVRVVDTGSFSAAARIQNIGQPTVSKAIAQLEDWLGVRLLLRSTRGLAPTEAGMSFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   + +   +  + ++   SG++R++  +   +  +   L  FL  +P++++ L+
Sbjct: 67  ERARRAIEEADEAVLAARGTAAGLSGRVRVSAAVCFARLHIVPKLPAFLATHPNVEVDLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++++ID+  +  D A+R+  P+    +  RK+        A P Y +   +P +  +L 
Sbjct: 127 LEDRNIDLVAEGVDVALRM-GPLTDPGMTVRKIAERRRLVMATPEYFERYGKPETPSDLI 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H  + +        EDF +    ++      G  RIS  +      +    + G G+ +
Sbjct: 186 GHQAVIYTR--DNGGEDFTFTRNTEQTSIGLSGRVRISATE-----GLRAAVLAGIGLTI 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++          +V  ++D   P+ ++   YP     + K +AF +F+
Sbjct: 239 ASEFAFSPELKTGEVVTALDDWTLPAISLSAVYPTGRMASTKARAFVSFV 288


>gi|229847429|ref|ZP_04467529.1| putative LysR-family transcriptional regulator [Haemophilus
           influenzae 7P49H1]
 gi|229809667|gb|EEP45393.1| putative LysR-family transcriptional regulator [Haemophilus
           influenzae 7P49H1]
          Length = 295

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 138/303 (45%), Gaps = 17/303 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L VF  V  +GSF+ AA+QL ++ S++SR +  LE ++G+ L  R  R L LT
Sbjct: 1   MKTTSEELTVFVQVVENGSFSRAAKQLSMANSAVSRVVKRLEEKLGVNLINRTTRQLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++   +   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGLQYFRRVQKILQDMAAAEAEMLAVHEVPQGILRVDSAMPMVLHLLVPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+ L+     I++     D A+R  + +  S L  R L   H    A+P YL     P
Sbjct: 121 HIQLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSHFRVIASPDYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S + L  H  + F +  P  +  +  L     P    +IS     S   I++  C+ G 
Sbjct: 180 QSTEALANHQCLGFTE--PSSLNTWEVLDAQGNPY---KISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA L D++V ++       P     + D   P   VY  Y +   N  +L+ F +F+  
Sbjct: 235 GIACLSDFLVDNDIAEGKLIPLFSNHITDETLPFNAVY--YSDKAVNL-RLRVFLDFLAE 291

Query: 293 KAR 295
           K R
Sbjct: 292 KLR 294


>gi|148652987|ref|YP_001280080.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148572071|gb|ABQ94130.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1]
          Length = 299

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 129/265 (48%), Gaps = 15/265 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GS + AAE L ++ S++SR ++ LE ++   LF R  R L LT
Sbjct: 1   MKVTLNELDTFISIVDTGSISQAAEYLDVTVSAVSRSLARLEKKLDTALFRRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G         V + LE  +  L ++   PSGKLRI        +++   + ++   YP
Sbjct: 61  QEGEMYLARIRGVLNDLEAAEDMLIKNKAVPSGKLRIDAATPFMLHVIAPLMTKYSQAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I+L+ +   +D+  +  D AIR+ + ++ S+L    L    +   A+P YL+    P
Sbjct: 121 QIDIELVSNENLVDLLEERTDVAIRIGE-LKDSTLNATPLGLSQIRILASPAYLQRQGTP 179

Query: 181 LSIQELDKHNLITFGDLIPK-----CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            S+++L  H L+ F  L PK       + FN L            + ++ +S  ++ Q  
Sbjct: 180 QSVEDLAHHQLLGFNAL-PKLNDWPIYDAFNNLFHAQ--------TNIKADSGETLRQLA 230

Query: 236 VLGSGIALLPDYIVKDNPNLVRIME 260
           + G+GI  L D++ + +    R++E
Sbjct: 231 LCGTGIVCLSDFMTQQDIKEGRLIE 255


>gi|330828926|ref|YP_004391878.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328804062|gb|AEB49261.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 300

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 137/296 (46%), Gaps = 12/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V    SFT AA QL +S +  S+ +  LE  +  +L  R  R +  TE G   +
Sbjct: 7   MRTFIKVVECQSFTKAANQLGISVAMASKLMQQLEESLATRLLSRTTRQVNPTEAGQFYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + +  +  +LE T  +L   + +P+G L+++  +D G   L   L  F   +PD+++ + 
Sbjct: 67  QRSLALLAELEETHSQLTHHNQQPNGTLKLSVPMDFGYLHLSPALPLFRQRFPDLKLDIE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ + +  +  D A+R+   +  SSL+ R+L TI +   A+P YL     P   ++L 
Sbjct: 127 YSDRRVALVEEGFDLALRIGH-LSDSSLVARQLATIRVELCASPAYLARKGRPGKPEDLK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ + +    P+            RP G      L+ N+ +++ +      GI L P +
Sbjct: 186 QHDCLIYTLTQPEWHFKRGSEQQSIRPQGP-----LRANNGVALTRAACDDQGIILQPTF 240

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
           IV +   +  LV ++ +       +Y  YP     + K++ F  F+   +L  + W
Sbjct: 241 IVGEALRSGQLVSLLPEWDKGDVGLYAVYPHRRFVSAKVRCFIEFVQERYLAPQQW 296


>gi|307300295|ref|ZP_07580075.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307319578|ref|ZP_07599004.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306894700|gb|EFN25460.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306904461|gb|EFN35045.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 310

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 125/264 (47%), Gaps = 5/264 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++R F  VA  GS +  A +L + QS+++R +  LE  VG+ L  R  R + +T++GS+
Sbjct: 9   ERMRTFARVAERGSLSAVARELGVGQSTVTRHLRELEEAVGVPLLSRTTRRVMMTDEGSR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  + E+   +E    E++ +    +G +R++ T   G   +   +  F  L+P+I I 
Sbjct: 69  YYARSVEILRLVEQASDEVRGTRGAQAGTIRVSCTAAFGVLHVSRLIFAFQDLFPEIGID 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D AIRL  P+  SS+  + L        AAP YL     P + QE
Sbjct: 129 LSLSDERVDLVREGIDVAIRL-GPVSDSSMRMKALGQSRRLLVAAPAYLAERGRPATPQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I   ++     E         +    P    L+V+  L++ +  + G GI    
Sbjct: 188 LIGHEGIRMSNV--SGSETLALQGRDGKYHAVPFGGRLRVDHGLAVREALIAGRGIVPAH 245

Query: 246 DYIVKDNPNLVRIMEDVITPSFTV 269
            ++V D     RI  + + P +++
Sbjct: 246 RWLVGDLLEAGRI--EAVLPGYSL 267


>gi|260223119|emb|CBA33365.1| hypothetical protein Csp_B18680 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 341

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 141/298 (47%), Gaps = 18/298 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    VAR  +F  AAE+L L+QS++SRQI  LE EVG+ LF RH R + LT  G +L 
Sbjct: 31  LRALEAVARHLNFRAAAEELALTQSAVSRQIQALEDEVGVPLFLRHTRAVELTGAGGQLL 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R       ++++   +++ ++ + S  + I+T        L   L+ F   YPDI I++ 
Sbjct: 91  RAAVPSLERIDSAVRQIRRTAGRKS--VAISTWASFASMWLIPRLEAFQAEYPDIDIRID 148

Query: 128 LDNKDIDISMDYADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             +  +D+     D AIR  +P  + S ++   +L    +   A+P  LK+        +
Sbjct: 149 ATDNPVDLDTSDVDLAIRYTQPGGVNSDAV---RLFGEQLTPVASPWLLKSGAPLRKAAD 205

Query: 186 LDKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L +  L+   D       + +    WL    +P  EP+   +  N    I Q  + G GI
Sbjct: 206 LARFALLEASDTHRVQNLEWLTWRRWLELNQQPRLEPK-RWMYFNYAHQIAQAALTGQGI 264

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGK--LKAFRNFIFLKA 294
           AL    +V D   + +LV ++      +  VY+    A +N+ +  ++AF +++  +A
Sbjct: 265 ALARMPLVADSLASGDLVEVLPGGRIDTPMVYWLLVGA-RNSSRPEIQAFCDWLLAQA 321


>gi|261822864|ref|YP_003260970.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261606877|gb|ACX89363.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 305

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 12/291 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L+LT+ G K    
Sbjct: 9   VFVTIIDRGSMIAAAETLDMSRAMVTRYLAEMETWAGARLLHRTTRKLSLTDAGEKTLVR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+       ++E    +   SG LR++ +  L Q  +   +  FL  +P + I L ++
Sbjct: 69  CREMLALTADMRVEADTGNAMLSGLLRLSCSQSLAQGAIGMAITTFLRHHPRVAIDLQMN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +++  +  D A+R+   +   +LI R L +      A+P YL     P  + +L  H
Sbjct: 129 NRSVNLVEERIDLALRITNELD-PNLIARPLASCESVLCASPSYLNEHGIPRQLTDLSVH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N +T+     K +  F+     D     P    L  N  L ++   + G+GIAL P Y V
Sbjct: 188 NCLTY-TYFGKSLWHFS---RDDEKFTIPVSGNLSGNESLVLLSGALEGAGIALQPRYSV 243

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                +  LV ++ +    +  +Y  Y    +    L+   +F+     DW
Sbjct: 244 TPYLASGQLVALLPEYRPQAMGIYGIYTSRRQMPAALRTLLDFLV----DW 290


>gi|300691422|ref|YP_003752417.1| transcription regulator protein, HTH-type [Ralstonia solanacearum
           PSI07]
 gi|299078482|emb|CBJ51135.1| putative transcription regulator protein, HTH-type [Ralstonia
           solanacearum PSI07]
          Length = 306

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 116/250 (46%), Gaps = 12/250 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT
Sbjct: 1   MSNPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G      + ++   +E  Q   ++S     G+LR+   + + + ++   L  FL  +P
Sbjct: 61  QDGRAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPVGVARKIVIPALPAFLDAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L   ++ +D+  +  DC +R+   +  SSLI R L  +     A+P YL     P
Sbjct: 121 QLEIELSSTDRRVDLVREGFDCVLRIGT-LGDSSLIARPLGQLPQMNCASPAYLARYGMP 179

Query: 181 LSIQELDKHNLI----TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235
            S+ +LD H ++    T G   P       W   VD R    P    + V++  S    C
Sbjct: 180 RSLDDLDHHRIVHYVQTLGTKAP------GWEYRVDGRTAYRPMQGVVTVSTAESYEAAC 233

Query: 236 VLGSGIALLP 245
             G G+   P
Sbjct: 234 QAGLGMIQAP 243


>gi|300716890|ref|YP_003741693.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299062726|emb|CAX59846.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 306

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 10/244 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A S SFT AAEQL +S+S+I + I  LE  +G  LF+R  R ++LT +G       
Sbjct: 16  FVTAANSNSFTEAAEQLGVSKSAIGKSIQRLEHNLGTALFHRTTRKISLTTEGEAYLASC 75

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 L+  ++ L+    +P+G +RI      G++++   L +    YP +++ +I ++
Sbjct: 76  QSALETLQMAEMALRSKLTEPTGTVRIDLPAAFGRSVMMPILMDMTKRYPHLKLTIIFND 135

Query: 131 KDIDISMDYA-DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + ID  +D   D AIR      ++ LI RKL    +   A+P YL    +P ++ +L+ H
Sbjct: 136 RIID-PLDIGFDLAIRFGAVKDTTDLIARKLNDQQLIICASPDYLSAYGKPETLDDLNHH 194

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL---QVNSYLSIMQYCVLGSGIALLPD 246
             +    L  +     +WL   D    + RI      Q++   +++  C+ G+G+   P 
Sbjct: 195 RCV----LAWRGGAPLSWLIR-DSEGKDVRIKPTPFHQISDGDAMIDACIAGAGLIQFPQ 249

Query: 247 YIVK 250
            +++
Sbjct: 250 ALLR 253


>gi|293604233|ref|ZP_06686641.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292817458|gb|EFF76531.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 301

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 11/243 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GS + AA  L +S++ +SR ++ +E  VG++L +R  R L+LT  G++  
Sbjct: 7   MQVFVEVADRGSLSAAAVHLDMSRAMVSRYLAEMEQWVGVRLLHRTTRRLSLTPAGAETL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +   +  +      P G LRI T++  G   L   + +++  +P   + L+
Sbjct: 67  PRCRQMLDMVGDLRSAVSTPEDTPRGLLRITTSMSFGARHLASAVTDYVKQHPGTSVDLM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +++  +  D A+R+   +   +LI RKL        A+P YL     P  +++L 
Sbjct: 127 LVERAVNLVEERVDLAVRITNDLD-PNLIARKLAVCRSVVCASPEYLSREGVPARVEDLS 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             N +T   FG  + +   D        +P+  P    +  N    ++Q  + G+GIA+L
Sbjct: 186 LRNCLTHSYFGKSLWRFERD-------GQPVDVPVSGNISANEVSMLLQAALEGAGIAML 238

Query: 245 PDY 247
           P Y
Sbjct: 239 PTY 241


>gi|161524251|ref|YP_001579263.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350992|ref|YP_001946620.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221198508|ref|ZP_03571554.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221208542|ref|ZP_03581543.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|160341680|gb|ABX14766.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335014|dbj|BAG44084.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221171533|gb|EEE03979.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221182440|gb|EEE14841.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 324

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEGALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L     P
Sbjct: 125 VKVHIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L  ++L     +    +  + +  FN +A    P G       +PR   L     ++I +
Sbjct: 185 LVPEDLAHFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292


>gi|116251610|ref|YP_767448.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256258|emb|CAK07339.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 297

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 129/276 (46%), Gaps = 15/276 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR  +FT AA +L +SQS++S  +  LET +GI+L  R  R ++LT+ G +
Sbjct: 7   NDLMAFLAVAREKNFTRAAAKLGVSQSALSHTVRQLETRLGIRLLTRTTRAVSLTDAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +     + +++     L E   +P+G +RI  +      ++   L+ FL   PDI+++
Sbjct: 67  LFQGVGPHFDEIDAQLDALTELRDRPAGNIRITASDHAINWIIWPKLQRFLPNKPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI +N   DI  +  D  +R+ + +    +  R           AP Y +    P   Q+
Sbjct: 127 LIRENGLSDIVTERFDGGVRMGEQVAKDMISTRIGPDFPFAVVGAPSYFEGKGVPEHPQD 186

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +HN I     T+G       ED N      R  G+   +    NSY S+ +  + G G
Sbjct: 187 LVRHNCINERLPTYGGFWAWEFED-NGKEIRIRVEGQLAFN----NSYQSV-EAALDGLG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           +A +P+ +   +     L R++E   +P +  Y  Y
Sbjct: 241 LAYVPEDVALPHIAEGRLRRVLE-AFSPYWDGYHLY 275


>gi|91783822|ref|YP_559028.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687776|gb|ABE30976.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 294

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS T AAE+  +S + + + I  LET +  +L  R  R  +LTE G + +
Sbjct: 7   MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLETRLVTRLLTRTTRRQSLTEIGRQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L++   +  G  +    + E+L  +PDI ++L 
Sbjct: 67  EQCRRILADVKDAESLAEAMAAAPRGVLKVTAPLTYGVEVFAPAMTEYLTAWPDITLELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ ID+  +  D ++R+ + +  SS + R L    M A A+P YL     P + ++L 
Sbjct: 127 LSNRVIDLVEEGFDASVRIGQ-LPDSSFVARPLKPYRMRACASPAYLARAGTPRTPEDLM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + F   +    E    L          R    + N+  ++    + G G+ L P+ 
Sbjct: 186 QHECLGF---LHWGREGLWRLGGETADENHLRAGRFRANNGQALKVAALHGFGLVLQPEA 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++     +  LV ++ED +     V+  YP   + T KL +F +F+
Sbjct: 243 LLAREIASGELVSVLEDYLPEGAPVHLLYPRDRRATPKLTSFIDFV 288


>gi|300704477|ref|YP_003746080.1| transcriptional regulator (lysr family) [Ralstonia solanacearum
           CFBP2957]
 gi|299072141|emb|CBJ43473.1| transcriptional regulator (LysR family) [Ralstonia solanacearum
           CFBP2957]
          Length = 297

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 138/284 (48%), Gaps = 24/284 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  +  +     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGAAFLAHARGILAAVDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ ID+  +  D AIR+   ++ S+L  R+L T  +   A+P YLK    P
Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRI-GTLRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR------ISCLQVNSYLSIMQY 234
            ++ +L  H L+ F  + P+ +   +W      P+  P       +  L+ +S  ++ Q 
Sbjct: 180 RTVDDLRHHALLGF--VQPESLN--HW------PLRGPHGDRLRIVPTLKASSGETLRQL 229

Query: 235 CVLGSGIALLPDYIV---KDNPNLVRIMED----VITPSFTVYF 271
            + G+G+  L D++    +   +LV+++ D    ++ P   VY+
Sbjct: 230 ALQGAGLVCLADFMTAADRRAGDLVQVLPDATVEILQPIHAVYY 273


>gi|288958403|ref|YP_003448744.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288910711|dbj|BAI72200.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 295

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 131/297 (44%), Gaps = 21/297 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA++LH++Q++IS QI  LE  +G+ LF R  R L LTE G  
Sbjct: 9   NALRAFEAAARHLSFTKAADELHVTQAAISHQIKALEEWLGLPLFRRMNRALALTEAGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E    L      L  +    SG L I+T        L   L  F   +P++ ++
Sbjct: 69  YLPPVREAMDTLSQATDRLIRAD--SSGTLTISTMPSFASKWLVPRLMRFQKRHPEMDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D +    D AIR    +     ++R L+T  +     P  L   R  ++ ++
Sbjct: 127 VHSTSQMVDFARHDVDLAIRFGSGLWPDLRVER-LLTEDIFPVGHPSLLSGNRPLVNPED 185

Query: 186 LDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           L  H L+          +D+N  W A   R  G   +     L+ +     +Q  + G G
Sbjct: 186 LRHHTLL---------HDDYNISW-AVWCRAAGIEGVDTERGLRFDDSSFTLQAAINGHG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IAL    +V D+     LVR+ E  +  S   Y   P    +  K+KAF +++F +A
Sbjct: 236 IALARGVLVADDIAAGRLVRLFEVRLPGSLAYYVVAPHHYYSRPKVKAFHDWLFEEA 292


>gi|226939579|ref|YP_002794652.1| transcriptional regulator, LysR family [Laribacter hongkongensis
           HLHK9]
 gi|226714505|gb|ACO73643.1| Probable transcriptional regulator, LysR family [Laribacter
           hongkongensis HLHK9]
          Length = 298

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 127/276 (46%), Gaps = 10/276 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L+ F  V + GS + AA Q  +  + I R++  LE  +G++L  R  R LTLT++G
Sbjct: 3   DFRQLQTFVEVVKQGSLSAAARQEGVVPAVIGRRLDALEERLGVRLLVRTTRRLTLTQEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        +  +L   +  +      P G LR+      G+  +  ++  F    PDI+
Sbjct: 63  AAFFEDCQRLLTELAEAEAAVASGVQGPKGHLRVTAPAGFGRRHVAPHVASFQRANPDIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+  +  D AIR+   +  SSL+  +L        AAP YL     PL+ 
Sbjct: 123 VTLDLSDRLVDLLAERVDVAIRISD-LADSSLVAVRLAENRRVVVAAPAYLARHGVPLTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
           ++L + + +T G   P+      W   V   +   ++S  L  N    +  + + G G+A
Sbjct: 182 EDLSRFDCLTLGASQPR-----GWSFVVAGKLVNWKVSGLLACNDGAVLHDWALKGLGLA 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
               + VKD+     LV +++   +P + V    P+
Sbjct: 237 WRSLWEVKDDLTEGRLVTVLDAFSSPDYPVCAVVPQ 272


>gi|188580492|ref|YP_001923937.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179343990|gb|ACB79402.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 304

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (50%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L +F V+AR+G F  AA +L +S S++S  + GLET +G++LF R  R +TLTE G
Sbjct: 8   DLGDLNLFRVIARAGGFRRAALELDVSPSALSHALRGLETRIGVRLFNRTNRAVTLTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L       + ++E     L     KP+G+LR+    D  + +L   L  FL  YPD++
Sbjct: 68  ADLLTRLEAGFGEIEEGLEALNRYRGKPAGRLRLNVLTDAARLVLGPALSGFLAAYPDVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +++++ +  +DI     D  IR    +    +       I     A+P YL+  
Sbjct: 128 LEVVVQDDFVDIVGQGFDAGIRFGGRVPEEMIAVPIGGDIRWIMVASPGYLEKA 181


>gi|241662694|ref|YP_002981054.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240864721|gb|ACS62382.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 298

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 149/304 (49%), Gaps = 21/304 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L+LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLDTTLLSRTTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  + ++     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGATFLAQARRILAAVDEAEEQIALRRQQPAGRLRVNAAMPFMLHVVAPLVPDFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  ++  ID+  +  D AIR+   ++ S+L  R L T  +   A+P YLK    P
Sbjct: 121 QIDLELNTNDLIIDLLEEDTDVAIRI-GTLRDSTLRARLLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L  H L+ F  + P+ +  +       DR   EP    L+ +S  ++ Q  + G+
Sbjct: 180 RNVDDLQTHALLGF--VQPESLNLWPLRGPHGDRLRIEP---TLKASSGETLRQLALQGT 234

Query: 240 GIALLPDYI-VKDNPN--LVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291
           GI  L D++ V+D  +  LV+++ D    V+ P   VY+      +NT        F+ F
Sbjct: 235 GIVCLADFMTVEDRRSGALVQVLPDATVEVLQPIHAVYY------RNTQLASRIACFLDF 288

Query: 292 LKAR 295
           L+AR
Sbjct: 289 LEAR 292


>gi|116251190|ref|YP_767028.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255838|emb|CAK06919.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 308

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + V   V   GS + A+  L    +++SR++S LE  +  +L  R  R +TLTE G  
Sbjct: 5   DAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRKITLTEAGRS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+  ++E  +         P G+L +   I  G+  +   + +FL  YPDI ++
Sbjct: 65  YVEAAREILDRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPDINLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YL     P    +
Sbjct: 125 LMLGDRLSNLVEDHIDVALRIGN-LPDSNLIATRLGAIRRTVYASPDYLTRHTLPPHPGD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ +TF  +        +W  T  +  +  P  S L VN+  + +   V G GI  +
Sbjct: 184 LAGHDCVTFEGM----ASMLSWTFTEGKHDLAVPIRSRLAVNTAEAAVDAAVAGLGITRV 239

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y          LV +++D   P   V+  YP       KL+A  +F   + R
Sbjct: 240 LSYQAARAEMAGLLVPLLQDFEPPPAPVHLVYPAQGLVPLKLRALLDFATPRLR 293


>gi|145639041|ref|ZP_01794649.1| DNA topoisomerase I [Haemophilus influenzae PittII]
 gi|145272013|gb|EDK11922.1| DNA topoisomerase I [Haemophilus influenzae PittII]
 gi|309750999|gb|ADO80983.1| Putative LysR-family transcriptional regulator [Haemophilus
           influenzae R2866]
          Length = 305

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 135/289 (46%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K I++  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKINLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GIA L
Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I+    +   L+ ++ +       ++  YP       K++AF  F+
Sbjct: 240 PKFILGSAFEKGELIELLPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|295676667|ref|YP_003605191.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436510|gb|ADG15680.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 309

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 135/307 (43%), Gaps = 25/307 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  VA  GSF  AA QL++S S ++R +S LE  +GI+LF R  R + LTE G+
Sbjct: 5   FQAMQAFVKVADVGSFAQAAAQLNVSTSVVTRHVSSLEQHLGIRLFQRTTRKVVLTEAGA 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  +LE  +     +S + +G LRI          L     E+   +P + +
Sbjct: 65  QYADGCRVLLAELEEVESRATTASREVAGDLRIVALGSFSLFRLTPLFAEYQARFPQVNL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L  K +D+     D  I     I+S SL+ R+L+  H    AA  YL     P +  
Sbjct: 125 RVTLTEKRVDLLEGGFDVGIVTEHMIRSESLVVRRLINSHAVPVAAAAYLAQAGHPRTPA 184

Query: 185 ELDKHNLIT--FGDLIP-----KCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYC 235
           +LD+H LI   F    P     K   D +  +      GE     +   VNS +   Q  
Sbjct: 185 DLDRHRLIAAPFDTTGPMWIFRKGDGDADSASGGGDDSGESIAIDASFTVNSMIMQKQAA 244

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   GIALLP  +V+D      LVR+++   V+     V   YP            R F+
Sbjct: 245 LGAMGIALLPLEMVEDELRAGTLVRVLDRYAVLNGDVAVSLVYPS-----------REFV 293

Query: 291 FLKARDW 297
             K R++
Sbjct: 294 PRKVREF 300


>gi|319776354|ref|YP_004138842.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           F3047]
 gi|317450945|emb|CBY87172.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           F3047]
          Length = 306

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 128/273 (46%), Gaps = 9/273 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSEGYDLALRIDY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GIA L
Sbjct: 184 LEHHN----GLLYKNAMNPVNWVGSRINQTQRFKIQSKVVSNSAFALLNMAKAGLGIANL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           P +I+    +   L+ I+ +       ++  YP
Sbjct: 240 PKFILGRAFEKGELIEILPEYKQQKLEIHVVYP 272


>gi|172063541|ref|YP_001811192.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996058|gb|ACB66976.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 301

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 29/303 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +  +S  I  LE +VG+ L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMTSFTRAAESLGIQKGRVSMVIRKLERDVGVALLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++  +++  Q     +  +  G+LR+    +L ++++   L + +  +P+++
Sbjct: 63  RAFYSRARDLLAEVQELQSMFSGNGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  PI   +LI R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRL-GPITDDTLIARPLGKLRMTNAASPSYLARHGIPHTL 181

Query: 184 QELDK------HNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIM 232
            +L        H  +T G   P       W    + P G+     P  S +QVNS  +  
Sbjct: 182 DDLRSQGHRMVHYTLTLGARHP------GW----EYPNGDGYASLPLPSAMQVNSVQTYH 231

Query: 233 QYCVLG-----SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
              + G     +G + L  +I  ++  LV ++ D+                 + +++AF 
Sbjct: 232 AAGLAGIGLIQAGYSALAHHI--ESGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFM 289

Query: 288 NFI 290
           ++I
Sbjct: 290 DWI 292


>gi|325518369|gb|EGC98091.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 324

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L     P
Sbjct: 125 VKVHIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLNQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L   +L     +    +  + +  FN +A    P G       +PR   L     ++I +
Sbjct: 185 LVPDDLAHFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 236 AALDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292


>gi|74311889|ref|YP_310308.1| putative LysR type transcriptional regulator [Shigella sonnei
           Ss046]
 gi|73855366|gb|AAZ88073.1| putative transcriptional regulator LYSR-type [Shigella sonnei
           Ss046]
          Length = 314

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 15  NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 75  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 135 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 194 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 239

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 240 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITIEFL 298


>gi|262039924|ref|ZP_06013196.1| LysR family transcriptional regulator protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259042755|gb|EEW43754.1| LysR family transcriptional regulator protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 308

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 14/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGNISAAARKLEITPPSVSNALRLLEEHIGHPLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+     LE +   +++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTAAAVETLEKSLEIIRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  ++I  +  D  IR    ++   + +  +       YA+  YL     P    
Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILEGGVVARPLMKPFREGLYASSAYLAEYGVPAMPA 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L  H LI +       ++P  + D     TV+ P        L  N    +      G 
Sbjct: 186 DLHHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHGL 239

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  L + I++  P+    + +MED       +Y  YP+    T ++KA  +F+ + A D
Sbjct: 240 GIGRLFEPILQLQPDREQFIPVMEDYWKTYPPIYLYYPKNAGRTKRVKALIDFLIMHAAD 299


>gi|170720051|ref|YP_001747739.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758054|gb|ACA71370.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 315

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 14/292 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA+ GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRESHPDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPLSIQE 185
            + N+  D+  +  D +I L   +  S  + ++L   +    A+P Y+ +N      +  
Sbjct: 126 TMANRVPDLLDEGYDVSIVLATELPDSGFVSQRLGITYSIVCASPEYVARNGFAHKPVDL 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241
           L    L     +IP  +E   WL   D P G+  +    S  QVNS  ++      G G+
Sbjct: 186 LQHACLRMVSPVIP--LE--KWL--FDGPEGQELVNITSSPFQVNSADAMKTAIRSGMGM 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP Y   D   + +LVR+M D       +Y  YP       K+K +  ++
Sbjct: 240 GVLPIYSAIDGLRDGSLVRVMPDYRLQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|161523096|ref|YP_001586025.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348079|ref|YP_001941275.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221212138|ref|ZP_03585116.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160346649|gb|ABX19733.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189338217|dbj|BAG47285.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221168223|gb|EEE00692.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 309

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 124/272 (45%), Gaps = 9/272 (3%)

Query: 23  AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82
           AA QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     
Sbjct: 22  AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTD 81

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
           +++E    P+G+LRI        +     L EF   YP IQ+ +I++++ +D   +  D 
Sbjct: 82  QMRELRATPTGRLRIQMLPGFALDHFGVPLAEFNRRYPGIQLDVIVNDRVVDPVEEGFDI 141

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202
           A ++  PI S SLI+R+L  +     A+P YL+    P   +EL +H    +     +  
Sbjct: 142 AFQIFPPI-SDSLIERRLFVVRRLFCASPAYLEAHGAPQHPRELLQHTTALYSGYPSRN- 199

Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258
               W  T    + E  +   ++ NS   + +Y + G G+  LP  +  D      LV I
Sbjct: 200 ---RWTLTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPI 256

Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + D      +    YP   +   K+KA   F+
Sbjct: 257 LTDFQIAPLSFAAVYPATQRQALKVKALVEFL 288


>gi|329847285|ref|ZP_08262313.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Asticcacaulis biprosthecum C19]
 gi|328842348|gb|EGF91917.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Asticcacaulis biprosthecum C19]
          Length = 301

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 131/290 (45%), Gaps = 17/290 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA   SFT AA  L + +S++S  I+ LE+ +  +L YR  R + LT  G  L+  
Sbjct: 9   VFVRVAELSSFTQAAVSLGVPKSAVSSAIAALESRLKTQLLYRTTRKVQLTHDGHLLYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++    E  +   Q S    +G LR+   + + +N +   L EFL  +  +Q++L   
Sbjct: 69  ARDLLSDAEDIEAMFQSSPAALTGTLRVDMPVAMARNFIVPRLPEFLGRHAGLQLELSCT 128

Query: 130 NKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D+  +  DC IR+  +P   S L+ R+L  + M   A+P YL+    P ++ +LD+
Sbjct: 129 DRRVDVVAEGFDCVIRVGAQP--DSGLMARQLGEMVMANVASPAYLERHGTPQTLDDLDR 186

Query: 189 HNLITFGDLI---PKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           H ++ +   +   P   E  D +   T D P        + VNS  S     + G GI  
Sbjct: 187 HFMVHYVSQLGARPWGFEYRDGDSYRTRDVP------GRMFVNSTESFQSAALAGFGIIQ 240

Query: 244 LPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P      V     LV I+         V   YP       +++AF +++
Sbjct: 241 APVAGLAPVLGEGRLVEILPQYEAEPLPVALVYPRRRHQARRVRAFMDWV 290


>gi|290475341|ref|YP_003468229.1| transcriptional regulator [Xenorhabdus bovienii SS-2004]
 gi|289174662|emb|CBJ81456.1| Transcriptional regulator [Xenorhabdus bovienii SS-2004]
          Length = 316

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 10/245 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F + A+ GSFT AAE+L L++S++ + ++ LE  +G+KLF R  R L+LT +G    + 
Sbjct: 12  AFVMTAQLGSFTAAAERLGLTKSAVGKSLNRLEERLGLKLFQRSTRSLSLTPEGDIFLQS 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE  +  +      P G+LRI      G+  +   L      YP++ + +   
Sbjct: 72  CQNAIAILEQAEAGIASHITSPIGRLRIDLPAAFGRQRILPILLNITKEYPELTLSVSFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +D+  D  D  IR+ +   SS LI R+L T  +   A P YL+    P S  EL++H
Sbjct: 132 ERFVDVIEDGIDLVIRIGELADSSGLIARRLTTQKLVICATPDYLQRRGIPTSSDELNQH 191

Query: 190 NLITFGDLIPKCMEDFNWLATV----DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + I       +  + F+W   +    ++ I  P     ++    +++   + G G+A LP
Sbjct: 192 HCIVGF----RRHQPFHWCLRITNSNNKNITPP--PTYELADGDAMLTAVLAGCGLAQLP 245

Query: 246 DYIVK 250
            ++V 
Sbjct: 246 LWMVN 250


>gi|323527294|ref|YP_004229447.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323384296|gb|ADX56387.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 324

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 29/250 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A+ GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAQHGSLSAAGRKMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYPD+   L 
Sbjct: 67  NCCRQALQSLDDAKAVLQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPDVTFALT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   ++  +  D AIR   P Q SSL+ RKL        A+P Y+    EP      D
Sbjct: 127 LSDSLSNLVQEDIDLAIRFGVP-QDSSLVVRKLARNRRVLCASPEYIARKGEP-----KD 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE--------------PRISCLQVNSYLSIMQ 233
            H+L  F  ++         L+T   P+ E              P  S  + N      +
Sbjct: 181 PHDLANFDCIV---------LSTGSGPVNEWRFTRGDEVQHYTVPLDSARETNDGAVARE 231

Query: 234 YCVLGSGIAL 243
           + + G GIA+
Sbjct: 232 WALRGYGIAI 241


>gi|238793677|ref|ZP_04637299.1| Transcriptional regulatory protein [Yersinia intermedia ATCC 29909]
 gi|238726918|gb|EEQ18450.1| Transcriptional regulatory protein [Yersinia intermedia ATCC 29909]
          Length = 297

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 132/289 (45%), Gaps = 10/289 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  T  G
Sbjct: 5   NFNDLISFLMVARERSFTKAAAKLGVSQSALSHSIRGLEERLELRLLTRTTRSVAPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E+    L E   +P+G +RI        + L   LK FL  YPDI 
Sbjct: 65  ERLANSLGPRFAEIESELDALSEMRERPAGNIRITAGEHAVDSTLLPVLKSFLADYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  IRL + +    +  R    + M    +P YL     P++ 
Sbjct: 125 VEITVDNTLTDIVSGRFDAGIRLGEQVAKDMIAVRIGQDMSMAVVGSPSYLAKYGIPVTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
            +L  H  I     +P     + W    ++   E R+     L  NS    +   ++G G
Sbjct: 185 ADLQNHRCINM--RLPTMGGLYAW--EFEKEGYELRVRVDGQLTFNSLRQRIDAAIMGFG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +A +P+  VK    + +LVR++++   P    Y  YP   ++T     F
Sbjct: 241 LAFVPEDAVKAEIASGSLVRVLKEWCEPFPGYYLYYPSRRQHTTAFSLF 289


>gi|134302729|ref|YP_001122697.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134050506|gb|ABO47577.1| Transcription regulator, LysR family [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 298

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 19/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
              FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT +G  L 
Sbjct: 12  FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71

Query: 68  RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                + ++++  + +L ES  K PSG L+I+T+    QN+L   +KE+   +  ++I++
Sbjct: 72  NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++ K  +   + AD  + +   P +  +++ RK+ T      A+P Y+     P +I +
Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--NIVARKIATTRYVLCASPAYINKNGSPSNISD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242
           L  HN I     +         L  + +    P+   S +  N+ +  ++ CVL   GIA
Sbjct: 189 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +YIVK+   N  L+ +++D       +Y  YP+      K+K F N +
Sbjct: 241 QFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLV 291


>gi|121593532|ref|YP_985428.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120605612|gb|ABM41352.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 304

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 142/295 (48%), Gaps = 22/295 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F ++AR  S +  A +L +S ++ S++++ +E+ +G++L  R  R L LT +G+  
Sbjct: 10  EMAFFSLLARWASLSATARELGISTAAASKRLAQMESRLGVQLVSRTTRRLHLTAEGNTY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +  +++  +  + +   +P G LR+  T+  G++ +   +  F+  +P IQ+QL
Sbjct: 70  LQHARRILAEIDAMEQLVSDMQAEPQGLLRVNATLGFGRSHIAPLVPAFVRRHPQIQLQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +   ++ D  D  IR  +P   + +I R+L        AAP YL     P    EL
Sbjct: 130 QLSVQPPPLADDGFDVCIRFGEP-PDARVIARRLAPNRRLLCAAPAYLARRGTPTRPAEL 188

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238
            +H+ I    GD     +  FN         G  +   +++ ++LS       + + + G
Sbjct: 189 PQHDCIDIRQGDDA-HGVWRFN---------GHRKQETVRLRNHLSTNDGEIAVSWALAG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI +  ++ +     +  LV+++ D  TP   ++  YP+    T ++KAF +F+
Sbjct: 239 MGIVMRAEWDIARYLRSGRLVQVLRDYDTPPADIHAVYPQRHAATARVKAFVDFV 293


>gi|91776942|ref|YP_546698.1| LysR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710929|gb|ABE50857.1| transcriptional regulator, LysR family [Methylobacillus flagellatus
           KT]
          Length = 299

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 143/298 (47%), Gaps = 15/298 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VA   SFT AA  L L + SIS  +  LE  +G +L  R  R + LT  G   +
Sbjct: 7   MTVFTRVAELSSFTQAATSLGLPKGSISMAVQKLEAHLGTRLLQRTTRKVVLTHDGELFY 66

Query: 68  RVTSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +   ++   ++   +   L E+ ++  G++R+   + + + +L  +L  FL  +P I+I+
Sbjct: 67  QRCKDLLTDMDELESMFLLDETGIQ--GRIRVDVPLAVAREVLMPHLPAFLRQHPGIRIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC IR+   +  S L+ R++    +   A+P YL+    P ++ E
Sbjct: 125 LSSTDRKVDLVAEGFDCVIRV-GSLGDSGLVARQVGLHPIVNCASPAYLQQHGTPQTLDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +H ++ +  ++    E+  W       I   ++ S + VN+  +  Q C+ G GI  +
Sbjct: 184 LTRHFVVHYTQVLGS--EEAYWEYVQGSDIIRMKMQSIITVNNSDAYTQACLAGLGIIQV 241

Query: 245 PD-----YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P      YI++D   LV ++ +       V   YP       +++ F +++  + +D+
Sbjct: 242 PQAAARPYIMQD--RLVELLPEYRAAPMPVSMLYPNRRHQPRRVRVFMDWLVDRLQDY 297


>gi|309779384|ref|ZP_07674146.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308921942|gb|EFP67577.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 307

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 136/294 (46%), Gaps = 14/294 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A +GS + AA  L ++  ++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 10  ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++     L ++  +PSG LR+  T+  G+  +   + E++  YPD+ +QL
Sbjct: 70  LERARRILGEIDDLDQLLTQAKGRPSGLLRVNATLGFGRMHIAPAISEYVKAYPDVDVQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  +R  +P   + ++ RK+ +      A+P YL+    P +  EL
Sbjct: 130 QLSADPPPLNEDLFDVCVRFGEP-PDARIVARKVASNRRLLCASPAYLRERGTPATPAEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSG 240
            +HN I     I +  + +           + R   + V   L+       + + + G G
Sbjct: 189 ARHNCIG----IRQGSDAYGVWRLASGKGAKRRTETVHVRGNLTTNDGEIAVNWALEGHG 244

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           I +   + ++    +  LV+++    TP   VY  Y +  + + +++ F +F+ 
Sbjct: 245 IVMRAQWDIERYLKSGRLVQVLPQYATPEADVYAVYHQRHQLSSRIRLFVDFLM 298


>gi|154251281|ref|YP_001412105.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gi|154155231|gb|ABS62448.1| transcriptional regulator, LysR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 303

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD  R+F  V  + S + A  +L LS +++ R I+ LE  +G KLF R   G  LT  G
Sbjct: 6   NWDAYRIFLAVVDTQSLSGAGRRLKLSHATVGRHIATLEKRLGTKLFVREPTGYALTGAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +    E           +  G +R+A    +        L EF   +P I+
Sbjct: 66  ERLRAEVEPMSLAAERALHAASSEDGQAQGLVRVAIPHSIASYWFMPYLDEFAARHPGIE 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+++ +   + +    AD  IR   P +  +++ RK+  I +  YA+  Y +    P   
Sbjct: 126 IEIVNEVTQVSVKRRDADIVIRPYGPGR-ENVVGRKIGRIGVGFYASRSYAERFGLPSKR 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +E  +H +I FG    + +E  +WLA V +     R++ L+  S   ++Q    G GI+ 
Sbjct: 185 EEWKEHRIIGFGGRAAE-VELADWLAHVTQG---ARVA-LRCFSDADLVQAVRAGVGIST 239

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L         +L+RI    +     ++      L++T  ++A  +F+  KA+
Sbjct: 240 LVCLTGDHYDDLIRIAPQKLANGTEMWLLAHPDLRDTAPVRAVIDFLGEKAK 291


>gi|28900220|ref|NP_799875.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260361655|ref|ZP_05774682.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260880782|ref|ZP_05893137.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260896508|ref|ZP_05905004.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|28808531|dbj|BAC61708.1| putative transcriptional regulator protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308089249|gb|EFO38944.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092598|gb|EFO42293.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308112751|gb|EFO50291.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 293

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 136/274 (49%), Gaps = 11/274 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F  V + GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT +G  
Sbjct: 4   DDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNKGDA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   +V   L++   +    S++  GK+++    +  ++ LQ  L EF   YP +++ 
Sbjct: 64  YYQDLQKVLTLLDSANQQASNESIEVRGKIKLGLLPETYEH-LQPILFEFQDQYPQVELD 122

Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++N  ID+     D A+     +  S ++ RK++T+     A+P+YL+    P +++
Sbjct: 123 IRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPATLE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  I F    P    D  W         +P++     N+   I    VL  GI+ +
Sbjct: 182 ELSDHQCICFR--WPNGNVDNLWHFQEQNVALKPKLIS---NNIGFIKSSTVLDRGISYI 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           P  +VK   ++  LV+++        T +  YP+
Sbjct: 237 PKLLVKNELESGALVQVLSQYAVTEETGWLLYPQ 270


>gi|77458585|ref|YP_348090.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382588|gb|ABA74101.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 321

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 142/296 (47%), Gaps = 11/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  V R  SF  AA++L  S + +S++IS LET +  KL +R  R + LT+ G +
Sbjct: 28  EDLKVFLTVIRKNSFASAADELGFSPAYVSKRISVLETTLASKLLHRTTRRIALTDDGER 87

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++    +    E+ ++  +P+G L I ++   G+N +   + +     P + I+
Sbjct: 88  VRIWAEKLLGDFDQFLGEISQARHQPAGSLHICSSFGFGRNHVAPAISQLSRACPKLDIR 147

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  I +   +    L  RKLV+      A P YL+    P S+++
Sbjct: 148 LDVFDRVVDLVGEGFDLEILVGDDLPGQHL-ARKLVSNRRVLCATPEYLERRGTPQSLED 206

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L  H+ +    ++ +    F  W  + D      R++  L  NS   ++++ + G GI L
Sbjct: 207 LKDHDCL----VLKERNNAFGIWTLSKDGQEETVRVNGPLSSNSGEIVLEWALSGGGILL 262

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              + VK   +   LV+++ D  T S  V+  YP  L  + KL+    F+    RD
Sbjct: 263 RSMWDVKPMLEQGRLVQVL-DGYTQSANVWAVYPTRLSESAKLRVCVEFLEEYFRD 317


>gi|330892038|gb|EGH24699.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 266

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 15/251 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  +ISR+++ LE ++G++LF+R  R ++LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E  +  L+  +   SG LR+      GQ ++   L   +L  P + I L 
Sbjct: 66  PHAKTILEASEAARTTLKADAGSASGVLRVTAPSVFGQTVIMPLLPALMLENPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L         +P YL    +P  ++EL 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCVSPDYLARHGKPALLEELR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243
            H  I         ++   W        GEP     Q     NS  ++   C  G G+A+
Sbjct: 185 HHPCI--------ALQAMPWWPFTRN--GEPITIRAQGPFSANSVEAVRTACKQGMGLAM 234

Query: 244 LPDYIVKDNPN 254
           L  + V+   N
Sbjct: 235 LTYWDVRQEIN 245


>gi|158422960|ref|YP_001524252.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158329849|dbj|BAF87334.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 309

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 137/298 (45%), Gaps = 13/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + V   V  +GS +  A  L    +++SR+I+ LE  +G  LF R  RGL LTE G 
Sbjct: 4   FDAMSVLLAVVEAGSLSAGARLLRAPLATVSRKIAELELHLGTPLFVRSRRGLALTEPGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  +  +LE  + E       P G L +   I  G+  L     EFL  +P+I +
Sbjct: 64  AFVAASRRILSQLEEAEREAAGEFSTPRGTLHVTAPISFGERHLLPIALEFLAEHPEISL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ I +  ++ D A+R+   ++ S+LI  ++  +H    A+P YL     P   +
Sbjct: 124 RLTLTDRQISLGDEHIDVALRIGH-LEDSALIATRVGAVHRVICASPAYLARRGVPRRPE 182

Query: 185 ELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H  I+F    + P+     +  A    P   P+   L VN+  + +Q    G GI 
Sbjct: 183 DLATHEGISFQGFAVAPEWRYRRDSAAFSIEP--SPK---LAVNTTEAAIQAARAGLGII 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKAR 295
            +  Y V D   +  L  ++ + +     V   YP+A     K+++F ++    L+AR
Sbjct: 238 RVLSYQVADELRSGELQVLLPESVPEPLPVSLIYPQADMLPLKVRSFLDWTVPRLRAR 295


>gi|221199018|ref|ZP_03572063.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205278|ref|ZP_03578294.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175069|gb|EEE07500.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181469|gb|EEE13871.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 309

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 124/272 (45%), Gaps = 9/272 (3%)

Query: 23  AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82
           AA QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     
Sbjct: 22  AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTD 81

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
           +++E    P+G+LRI        +     L EF   YP IQ+ +I++++ +D   +  D 
Sbjct: 82  QMRELRATPTGRLRIQMLPGFALDHFGVPLAEFNRRYPGIQLDVIVNDRVVDPVEEGFDI 141

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202
           A ++  PI S SLI+R+L  +     A+P YL+    P   +EL +H    +     +  
Sbjct: 142 AFQIFPPI-SDSLIERRLFVVRRLFCASPAYLEAHGAPQHPRELLQHTTALYSGYPSRN- 199

Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258
               W  T    + E  +   ++ NS   + +Y + G G+  LP  +  D      LV I
Sbjct: 200 ---RWTLTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPI 256

Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + D      +    YP   +   K+KA   F+
Sbjct: 257 LTDFQIAPLSFAAVYPATQRQALKVKALVEFL 288


>gi|208780014|ref|ZP_03247357.1| transcriptional regulator, MarR family [Francisella novicida FTG]
 gi|208744018|gb|EDZ90319.1| transcriptional regulator, MarR family [Francisella novicida FTG]
          Length = 297

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 140/290 (48%), Gaps = 17/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
              FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT +G  L 
Sbjct: 12  FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71

Query: 68  RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                + ++++  + +L ES  K PSG L+I+T+    QN+L   +KE+   +  ++I++
Sbjct: 72  NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++ K  +   + AD  + +   P +   ++ RK+ T      A+P Y+     P +I +
Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--DIVARKIATTRYVLCASPAYINKNGSPSNISD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGS-GIAL 243
           L  HN I     +         L  + +    P+     +++  +  ++ CVL   GIA 
Sbjct: 189 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISADNIEFIKACVLNDFGIAQ 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +YIVKD   N  L+ +++D       +Y  YP+      K+K F N +
Sbjct: 242 FHEYIVKDEIRNGQLIELLKDDFLDEQDIYIYYPKNKFVQPKVKEFVNLV 291


>gi|309781467|ref|ZP_07676203.1| regulatory protein [Ralstonia sp. 5_7_47FAA]
 gi|308919880|gb|EFP65541.1| regulatory protein [Ralstonia sp. 5_7_47FAA]
          Length = 305

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 140/310 (45%), Gaps = 37/310 (11%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE
Sbjct: 3   TMEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEAGLGVRLMTRTTRQLRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +   + ++ +L     +   +S   +G LRIA   ++G   L   +   L  YP 
Sbjct: 63  AGSHFYDDIAPLFERLREVHADTTAASETVAGTLRIAAPYEVGAQHLTEPVCRTLEKYPH 122

Query: 122 IQIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +QIQ+ +  +  D ++  Y    + + + +  SSL+ R++V I    YA+P  L   R P
Sbjct: 123 LQIQVHISWEQPDLLASGYDIVFVMVDQVLPDSSLVARRVVLIPRGLYASPTLLAE-RPP 181

Query: 181 LSIQELDKHNLITFGDLIP-KCM---EDFNWLATVDRPIGEPRISCLQV---------NS 227
           L           T  DL    C+   +D +W     RP+GEP +  ++V         N+
Sbjct: 182 LK----------TPADLAGWPCLSGPDDASW---AFRPVGEPAVEPIEVPIQPRLQTLNA 228

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            +   +  V G G+A +   +         LVR++ D    +  VY     AL    KL 
Sbjct: 229 EMR-ARAAVRGLGVARMARSVGDTEVAAGRLVRVLPDFELTALRVY-----ALMPARKLV 282

Query: 285 AFRNFIFLKA 294
             +  +FL A
Sbjct: 283 PRKVRVFLDA 292


>gi|325529165|gb|EGD06141.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 308

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 139/293 (47%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +  SGS + AA +L L+ ++IS++++ +E+  G+ L  R  R + LT +G    
Sbjct: 10  LSFFSTLVASGSLSAAARELGLTPAAISKRLTQMESRAGVGLINRTTRRMMLTPEGELYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +++     L  +   P G LR+  T+  G++ +   +  F+  Y  + +QL 
Sbjct: 70  QHARRILDEIDELAELLGTAKKSPKGLLRVNATLGFGRSHVAPAISRFVTKYRQVSVQLQ 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L      ++ D  D  IR  +P   + +I R+L        AAP Y+ +   P +  +L 
Sbjct: 130 LSVTPPPLTDDAFDVCIRFGEP-PDTRVIARRLAGNRRLLCAAPSYIASHGLPTTAHDLT 188

Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSG 240
           +HN I     I +  E +  W  T  R     +   +++N  L+       +++ + G G
Sbjct: 189 RHNCIG----IRQGDEAYGVWRLTSGRGASR-KTEAVRINGTLTTNDGEIAVKWALEGHG 243

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +  ++ +K    + +LVR++ D  TP+  ++  Y +  + + +++AF  FI
Sbjct: 244 ILMRAEWDIKRYLADGSLVRVLPDYETPNADIFAVYSQRHQMSNRIRAFVEFI 296


>gi|317401900|gb|EFV82507.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 306

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 130/293 (44%), Gaps = 15/293 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            DWD LR F  VAR+   + AA +L +  +++SR+I  LETE+   LF +  + G  LTE
Sbjct: 2   LDWDSLRYFLEVARTQRVSAAARRLGVEHTTVSRRIRALETELDTLLFEKSRSAGFVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   + + +  L       SG LRI  T   G  +L     +F   YP 
Sbjct: 62  DGQRLFVHAEQMESTVHSARETLSGIGQALSGHLRIGATEGFGSYVLTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    +  KL    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCSKLCDYTLRLYGTPEYLARHPPIR 180

Query: 182 SIQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              +L  H+ I + D  L  + +     L    R +       L+  S ++     + G 
Sbjct: 181 GRADLAGHSFIGYVDELLFSERLRYLEDLLPASRVV-------LRSTSVVAQYHAALQGQ 233

Query: 240 GIALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +A+LP +I   +P L  ++E    IT SF +Y C+ E L+   ++     FI
Sbjct: 234 SLAILPCFIAAQDPRLKPVLEKEVEITRSFWMY-CH-EDLRKLKRVTVLWEFI 284


>gi|301026539|ref|ZP_07189967.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|300395470|gb|EFJ79008.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
          Length = 307

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQLLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|296163090|ref|ZP_06845863.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295886678|gb|EFG66523.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 294

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 134/293 (45%), Gaps = 21/293 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS T AAE+  +S + + + I  LET +  +L  R  R  +LTE G + +
Sbjct: 7   MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLETRLATRLLTRTTRRQSLTEIGRQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L++   +  G  +    + E+L  +PDI ++L 
Sbjct: 67  EQCRRILADVKDAESLAEAMAAAPRGVLKVTVPLTYGVEVFAPAMTEYLTAWPDITLELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ ID+  +  D ++R+ + +  SS + R L    M A A+P YL     P + ++L 
Sbjct: 127 LSNRVIDLVEEGFDASVRIGQ-LPDSSFVARPLKPYRMRACASPAYLARAGTPRTPEDLM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQYCVLGSG 240
           +H          +C+   +W       +G         R    + N+  ++    + G G
Sbjct: 186 QH----------ECLGFLHWGREGSWRLGGETADENHLRAGRFRANNGQALKVAALHGFG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + L P+ ++     +  LV ++ED +     V+  YP   + T KL +F +F+
Sbjct: 236 LVLQPEALLAREIASGELVSVLEDYLPEGVPVHLLYPRDRRATPKLTSFIDFV 288


>gi|292486778|ref|YP_003529648.1| HTH-type transcriptional regulator YhjC [Erwinia amylovora
           CFBP1430]
 gi|292900822|ref|YP_003540191.1| LysR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291200670|emb|CBJ47802.1| LysR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291552195|emb|CBA19232.1| Uncharacterized HTH-type transcriptional regulator yhjC [Erwinia
           amylovora CFBP1430]
          Length = 305

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 126/269 (46%), Gaps = 10/269 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA+Q+ LS S++S+ ++ LE E+ +KL  R  R L LTE G    
Sbjct: 7   MSVFTKVVELGSFTAAAKQMQLSVSAVSQIVARLENELQVKLLNRSTRNLGLTEAGKIYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  + +    +L   +  P G LRI ++  + QNLL    KE L  YP + + L+
Sbjct: 67  QGCRRMMAEAQQVHEQLWAFNNTPVGTLRIGSSSTMSQNLLAPMAKEILQEYPGLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D AIR+   +  SSL  ++L ++ M   AA  YL     P    ++ 
Sbjct: 127 TGIPAPDLIADGLDLAIRV-GALPDSSLFAKRLGSMPMVVCAAKAYLLQFGTPEKPSDIS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +  + P    DF+ ++     I          N   +++++   G+GIA +P  
Sbjct: 186 NHSWLEY-SVRPD--NDFDLISPEGIAIRLSPQGRFATNDAQTLIRWLKAGTGIAYVPLM 242

Query: 248 IVKD--NPNLVRIM----EDVITPSFTVY 270
            + D  N   V I+    + V  P + +Y
Sbjct: 243 WIIDEINAGEVEILFAHYQSVPRPVYALY 271


>gi|238782977|ref|ZP_04627005.1| HTH-type transcriptional activator aaeR [Yersinia bercovieri ATCC
           43970]
 gi|238716180|gb|EEQ08164.1| HTH-type transcriptional activator aaeR [Yersinia bercovieri ATCC
           43970]
          Length = 303

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LETE+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFARVVECGSFTAAARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     + L  YP + + L
Sbjct: 66  YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P      
Sbjct: 126 VTGIPAPDLIGDGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLLQHGTPEK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233
                       P  M +F+WL    RP     +  P     Q+        N   ++++
Sbjct: 181 ------------PSDMINFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKAGAGIAYAP 240


>gi|209520633|ref|ZP_03269386.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209498916|gb|EDZ99018.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 336

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 136/297 (45%), Gaps = 17/297 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+  YP+
Sbjct: 65  AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSTILPEFMHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ +D+  D  D A+R+R  P ++++++ R L         AP  L+    P
Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTEQMLVGAPSLLQQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L+  +L++   +     +P    D   +  +  P G       EPR   L     ++I +
Sbjct: 185 LTPADLNRFETLD----VPTS--DGRHVYNLISPDGTRHAHEHEPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +        ++   +   SF     Y   +   G + A R F+
Sbjct: 236 AVLAGVGIAALPEMMYGAALRAGQLSPVMPGWSFPTPQLYAVFVSRQGMVPAVRAFV 292


>gi|146307231|ref|YP_001187696.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575432|gb|ABP84964.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 311

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 131/288 (45%), Gaps = 4/288 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VA    F+ AA +L +S S++S+ I  LE  +G+ LF R  R + LTE G +
Sbjct: 7   DGLLTFIAVAEEKGFSAAAVRLGVSPSAVSQSIRNLEQRLGLVLFNRTTRSVCLTEIGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      L++   EL   +  PSG LRI         +LQ  L+ F+  YP+I ++
Sbjct: 67  YLERVQPALELLKSASQELGREADHPSGLLRINVPRAAYLIILQPVLRRFMAAYPEINLE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + ++N  +DI     D  IR    ++   +      T+     A+P YL     P   Q+
Sbjct: 127 IRVENLLVDIVSQGFDAGIRFGDAVEKDMVAIAVGPTLQAQVIASPTYLVQHGVPTHPQQ 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA-LL 244
           L  HN I +       +E +N+    ++    PR   L +N    +++  + G G+A ++
Sbjct: 187 LTMHNCIGYRHTTSGQIERWNFSRGDEKYDLTPR-GRLILNDSEILVRAALEGLGVAYMI 245

Query: 245 PDYI--VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             YI  +     LVR++ D       ++  YP+  +   KL+A  +F+
Sbjct: 246 NGYIEALVAQGRLVRLLADWSPTLPALHLYYPDRRRVPAKLRALIDFL 293


>gi|91789268|ref|YP_550220.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91698493|gb|ABE45322.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 306

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 132/290 (45%), Gaps = 12/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A   SFT AA    ++ +++SR +S LE  +G++LF R  R + LT+ G    
Sbjct: 13  IELFCLAAELSSFTAAAAAASVTPAAVSRSVSRLEERLGVRLFVRTTRQIRLTDGGRVYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   +  +      P+G LRI+         +   L +F   YP +Q+ + 
Sbjct: 73  EQCRQALLQLVDAERLVTGGQAAPAGLLRISMPTPYAHYRVLPLLPQFRKRYPQVQVDVH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID + +  D AIR R P   S+LI RKL    +   AAP YLK   +P ++ +L 
Sbjct: 133 LSNRNIDFADEGYDLAIRGRAP-DDSNLIARKLEDAALVLVAAPSYLKRAGKPKTLDDLQ 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           KH+ I F   +P       W    D      + +    CL  +  L +      G+G+  
Sbjct: 192 KHDCIQFE--LPSTGRKIPWTFQHDGKDIDVVTKGSYCCL--DDVLGVATLVRSGAGLVQ 247

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              YIV+    N +LV +M      S      YP A   + +++ F +F+
Sbjct: 248 TYRYIVEKDLKNGDLVELMPQFGGSSRPFILLYPHARHLSLRVRTFVDFL 297


>gi|169796262|ref|YP_001714055.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157003|ref|YP_002319048.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483717|ref|YP_002325940.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301345502|ref|ZP_07226243.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301594992|ref|ZP_07240000.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332855393|ref|ZP_08435849.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332867261|ref|ZP_08437511.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149189|emb|CAM87069.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|193077106|gb|ABO11877.2| transcriptional regulatory protein [Acinetobacter baumannii ATCC
           17978]
 gi|213056163|gb|ACJ41065.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986383|gb|ACJ56682.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332727483|gb|EGJ58910.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332734094|gb|EGJ65227.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 296

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT  G K
Sbjct: 5   DCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLNRTTRQMNLTGCGEK 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP I+I 
Sbjct: 65  FYQHCKVILSEFEWATYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPSIKID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQ 184
           L + ++ +D++    D  IRL     + SL   K++ T   + YA P Y      P S++
Sbjct: 125 LFMTDQLLDVNQHKFDLTIRLDG--SAPSLANSKILNTYQRYLYATPEYFNQHGLPTSLE 182

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240
           EL +H  LI + D   K +          +   E   +C  V   N+   ++  C+   G
Sbjct: 183 ELKEHKFLIYYQDSRHKKL-------IFQKDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+
Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFL 288


>gi|194433531|ref|ZP_03065809.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|194418294|gb|EDX34385.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|332093296|gb|EGI98355.1| hypothetical protein SD15574_1907 [Shigella dysenteriae 155-74]
          Length = 307

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLKVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 187 LSA---------LP-CLV----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|325917714|ref|ZP_08179904.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325536076|gb|EGD07882.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 299

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 132/283 (46%), Gaps = 6/283 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  VAR GSFT AA QL +SQS++S  +  LET +GI+L  R  R ++ TE G++
Sbjct: 7   NDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSTTEAGAR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    +++     L +   KP+G +RI T        +   L + L  YPD++I+
Sbjct: 67  LFATVAPRLQEIDDELSALTDFRDKPAGTIRITTAGHAADAYVWPALSKLLPDYPDLKIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    DI  +  D  IRL   +    +         M   A P Y  +   P +  +
Sbjct: 127 VTVDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPPQRMAVVAVPGYFVHHTIPAAPAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +HN I  G  +P       W      R I          NS  ++++  + G+G+A L
Sbjct: 187 LAQHNCI--GLRLPTHGGLLAWEFEQSGREIKVRVDGQWTFNSSGAMLRAALAGAGLAYL 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           P+ +V D+     L R++ED   P    Y  YP   +++  LK
Sbjct: 245 PESMVLDHIAAGQLRRVLEDWCEPFEGYYAYYPSRRQSSSALK 287


>gi|311105835|ref|YP_003978688.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760524|gb|ADP15973.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           80 [Achromobacter xylosoxidans A8]
          Length = 302

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 126/287 (43%), Gaps = 37/287 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A +GSFT AA++LHL+ S++ + ++ LE  +  +LF R  R L LT+ GS  +
Sbjct: 10  IEAFVTTADAGSFTAAADRLHLTASAVGKSVARLEARLRTRLFERSTRRLALTDAGSAYY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    V  +L+  +  L     +P G+LR+      G+ +    L +F   +P ++  + 
Sbjct: 70  RTCVRVLAELQDAEAVLAAQRQEPVGRLRVDLPATFGRRVALPLLLQFAQRHPQLRPCVS 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +D++    D A+R+  P Q +  L  R L +  +   A+P YL     PL+  +L
Sbjct: 130 FTDRFVDLADVGIDVAVRIGGPPQWAPGLGHRYLGSERVIFCASPQYLARRGTPLTADDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----------------SCLQVNSYLS 230
            +H+ + +G                 R  GEP +                  + ++S  +
Sbjct: 190 AQHDAVAYG-----------------RADGEPPVWRIAQGAGPASLRSVDGVMTLDSAEA 232

Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            +     G GIA L  ++  D   +  +V ++  +      +Y  +P
Sbjct: 233 QVDAVAAGFGIAQLATWLAADALRDGRVVEVLPQLAAEGLPLYLVWP 279


>gi|59713602|ref|YP_206377.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59481850|gb|AAW87489.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 311

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 127/265 (47%), Gaps = 23/265 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA++L ++ S++S+ I+ LE  + +KLF R  R L +TE G K++
Sbjct: 13  LATFIVVVNEGSFTAAAKKLGVTPSALSKLITRLENALSVKLFERTTRSLLITESGKKIY 72

Query: 68  RVTS-EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           + +   V    +   I   E +V PSG L +A        +LQ  +  FL  YP IQ++L
Sbjct: 73  QQSVIMVEAAQQAVDISSSEHTV-PSGSLTVAAPKAFLTIVLQPLITPFLTKYPKIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D   RL  KP +   L+ +++  +++   A+P YL+    P   QE
Sbjct: 132 RASDGDIDMIAQGIDVVFRLTDKPTE--GLVMKEIGKVNLSLCASPTYLEERGIPHLPQE 189

Query: 186 LDKHNLITFGDLIPKCMEDF------NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  H+ +  G+     + +F      + +A   R           VN     +     G 
Sbjct: 190 LANHDCLFLGETTTDHIWEFVKGTESHVIAVSGR---------YAVNHSQMRLNGVKDGF 240

Query: 240 GIALLPDYIVKD---NPNLVRIMED 261
           GI + PD+++K+   N  ++ ++ D
Sbjct: 241 GIGIFPDFVIKEALANNEVISVLSD 265


>gi|83945226|ref|ZP_00957575.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851396|gb|EAP89252.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 329

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 139/277 (50%), Gaps = 19/277 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDWD LR+F+ +  SGS + AA +L + Q ++SR++  LET +G +L  R A G+ LT  
Sbjct: 8   FDWDDLRIFHALVSSGSMSSAARKLGIGQPTVSRRLEQLETRIGARLVTRGAEGVELTAI 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQ----ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G    R+ ++V   +++T  +++    ++    +G + +A    +    +   L  F+  
Sbjct: 68  G---ERIWAQV-QIMQSTAGDIERIAHQADRADAGTVHLAAPEGVAGYWIARQLPSFVEA 123

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            P I ++ I    D ++++D +D  +++ +  +  S +  +L T+H   +AA  YL    
Sbjct: 124 NPAINLE-INTRVDGELALDQSDICLQMTES-KRMSHVATELGTLHYVPFAARAYLDTYG 181

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            P S+ ++  H +    DL+    +  +W   A+  + +  P    L  ++ L++++   
Sbjct: 182 APKSVADVLNHRI---ADLVSYSAQQTHWPKEASAIKQMMNP---SLTTDNSLALVEAVR 235

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
            G+ I+++P Y  K  P LV +   +  P  T++  Y
Sbjct: 236 AGTAISMIPTYAAKVQPELVHVDLGLEVP-ITLWMVY 271


>gi|239813099|ref|YP_002942009.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239799676|gb|ACS16743.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 303

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 3/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A +G FT AA    ++ +++SR IS LE  +G++LF R  R + LT+ G    
Sbjct: 13  IELFCLAAETGGFTSAALAAGVTPAAVSRSISRLEKRLGLRLFVRTTRSVRLTDAGRSYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   + E+      PSG LRI+     G + +   L  F   +PDI++ + 
Sbjct: 73  AQCRQALAQLAEAEREVMGQQALPSGMLRISVPTTYGHHRILPLLPAFRERFPDIRLHVH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID   +  D A+R+R     S+LI R L    +   A   YL+    P ++ +L 
Sbjct: 133 LSNRNIDFVEEGYDMAVRVRAQ-PDSTLIARHLEDADLVVVATRKYLRRAGTPRTLDDLA 191

Query: 188 KHNLITFGDLIPKCMEDFNWL 208
            H  I F   +P      +WL
Sbjct: 192 AHECIQFE--LPSSGRRISWL 210


>gi|238758348|ref|ZP_04619526.1| HTH-type transcriptional activator aaeR [Yersinia aldovae ATCC
           35236]
 gi|238703471|gb|EEP96010.1| HTH-type transcriptional activator aaeR [Yersinia aldovae ATCC
           35236]
          Length = 303

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 112/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT  A QL +S SSIS+ +S LETE+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVECGSFTATARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + + L
Sbjct: 66  YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTVEMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  +  D  IR+   +Q S L  R+L ++ M   AA  YL     P      
Sbjct: 126 VTGIPAPDLIANGLDVVIRV-GALQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233
                       P  M +F+WL    RP     +  P     Q+        N   ++++
Sbjct: 181 ------------PSDMTNFSWLEYSVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLNAGTGIAYAP 240


>gi|146310752|ref|YP_001175826.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145317628|gb|ABP59775.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 317

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 115/256 (44%), Gaps = 15/256 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S  W  LR F  V  + +F+  A +  +S S +SR I  LE  +G +LFYR+ R +  T
Sbjct: 7   ISIRW--LRFFIDVYETQNFSVVARREGISASQVSRVIHQLEDAIGQQLFYRNTRAVMPT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    R    V   LE  + EL E + +PSG +R+   +  GQ  +   L      YP
Sbjct: 65  ESGHLFVRYARTVTGSLEDARRELDERTREPSGVIRMNAPVFFGQRHIAPWLPALAERYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L L +  ID   D AD   R+ + +  SS   R       H  A+P Y++    P
Sbjct: 125 RLNLDLTLTDDYIDPHKDAADVIFRIGE-LTDSSFHARIFGQQFYHLAASPAYVQKHGAP 183

Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYC 235
               +L +H  + + G   P       WLA   +P G     P    L  N+  +++   
Sbjct: 184 EGPADLARHQCLVYRGSSGPN-----RWLAR--QPGGAWVHYPVTPRLSSNNAETLLIAA 236

Query: 236 VLGSGIALLPDYIVKD 251
           + G GI L PD+++ +
Sbjct: 237 LGGMGIVLFPDWLIGE 252


>gi|187921288|ref|YP_001890320.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719726|gb|ACD20949.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 299

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 131/297 (44%), Gaps = 19/297 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  VAR  SF+ AA +L +SQS  SR +S +E E+G  L  R  R +  TE 
Sbjct: 1   MDINALRIFCRVARLQSFSAAARELSISQSQASRAVSDIEAELGTLLLARTTRAVIPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+        V  +L+     +++  ++  G LR+      G   +   L  F   +P +
Sbjct: 61  GADYLIRVEAVLDQLDDAGQSVRQDELR--GTLRVGMPTSAGVREVIPRLPRFAERHPLL 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I ++LD++  D+  D  D AIR+   +  S+   R L +      A+P YL  C  PLS
Sbjct: 119 RIDVVLDDRRQDLVRDAVDVAIRI-GTLPDSNATARLLTSYARMIVASPAYLARCGTPLS 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
              L  H ++ +G   P       W       T + PI EP IS       ++ ++    
Sbjct: 178 PDALVGHRIV-YG---PAATVSTAWTFTRKGITSNVPI-EPNISFSDNEGAVAAVKA--- 229

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G GI  L  +  +   +  +LV I+ D       V+  +P         +AF NF+ 
Sbjct: 230 GLGITSLGYWACREELEEGSLVPILTDWSMVGTKVHAYFPLGRATRTAARAFINFLL 286


>gi|78066999|ref|YP_369768.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967744|gb|ABB09124.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 324

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL  YP+
Sbjct: 65  AGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLRRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L     P
Sbjct: 125 VKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L   +L     +    +  + +  FN +A    P G       +PR   L     ++I +
Sbjct: 185 LVPDDLSGFETLDTPSVDGRHV--FNLIA----PDGTRHVHEHDPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 236 AVLDGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292


>gi|187939567|gb|ACD38713.1| LysR family transcriptional regulatory protein [Pseudomonas
           aeruginosa]
          Length = 309

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +G+F  AA QL +++S ++ +I  LE  +   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVAETGNFAKAAVQLGVTRSVVTHRIQQLEHFINAPLFHRSTRHVRLSEVGETYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +++     +   +++    KP+GKLR+        +     L EF  LYPDI++ +I
Sbjct: 67  KECADMVAGFNSLTEQMRNLRAKPTGKLRVQMLPGFAIDHFGPLLAEFTALYPDIEVDVI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++  D   +  D A ++  P Q+ +LI+RKL ++     A+P YL+    P    +L 
Sbjct: 127 VNDRLTDPIEEGFDIAFQMFPP-QAETLIERKLFSVRRLFLASPEYLQRHPAPERPADLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H +  +     +    F      D  +       ++ NS   +  Y + G+ +  LP  
Sbjct: 186 EHRIGLYEGYPSRNRWQFQ---HGDETVELSLAGQVRSNSVHLLRDYALAGTALVCLPTL 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +     ++  L+ ++ D    SF     +P   +   K+++  +F+  +  D
Sbjct: 243 VAHADLESGRLLPLLIDYPLSSFNFSAVFPATQRRALKVRSLIDFLVERISD 294


>gi|126732381|ref|ZP_01748181.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
 gi|126707250|gb|EBA06316.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
          Length = 294

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 129/287 (44%), Gaps = 13/287 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AAE L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAFQVARLGTVSGAAEVLGVHHATVIRHIDALEGRLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L RV      + +  +  ++      SG+L + + +     L+   L  F   +PD+ 
Sbjct: 63  TDLLRVAQTTADQFQQLEGRIRGRGSDVSGELLVTSLVAFAP-LMVPALTSFRAAHPDVV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+ +  ++   +    A  A+R     Q    + +      +  Y    Y+     P   
Sbjct: 122 IRFLTGDRLFRLEYGEAHVALRAGNAPQEPDNVVQAFARQAIGLYGHKDYIARRGRPSGA 181

Query: 184 QELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+ +   D  P+    F  WL     P  E R+     +S + + Q  + G+G+ 
Sbjct: 182 ADLVNHDFVGHDD--PENRAPFYRWL-QAQVPYAE-RVVFRSEDSRV-VEQALLAGAGLG 236

Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAF 286
            +     +++P++  +M   ED  +P + V       L  T K++AF
Sbjct: 237 FMSTREARNHPDVELVMEPKEDWTSPLWLVTHV---DLHRTAKVQAF 280


>gi|118590643|ref|ZP_01548044.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118436619|gb|EAV43259.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 314

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 131/290 (45%), Gaps = 16/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + A  ++ LS + +S++I  LE ++G +L  R  R + +TE G   +
Sbjct: 7   MEIFARVVSAGSMSAAGREMSLSPAVVSKRIRRLEEKLGTRLLQRTTRQIAMTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S K  G L++A     G+  +  +L  FL    D+ + L 
Sbjct: 67  ERVVAILASVEEAESFVSRGSAKARGNLKVAVPTSFGRLHIAPHLGTFLAENTDLSVNLD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           L +  +DI  D  D AIR+ + +  SSL+ R+L  +H    A+P YL     P SI++L 
Sbjct: 127 LSDDFVDIVGDGYDLAIRIAE-LSDSSLVARRLAPVHRVLCASPAYLDKYGIPESIEDLV 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I   +  P  +   N + TV         + ++ NS   + +  + G G+AL   
Sbjct: 186 ANHVTIAATNQDPWRLAGPNGIETVRTQ------APIKTNSNEVVRECLLAGVGVALRST 239

Query: 247 YIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
           + V   P L      ++ P +       +Y  YP       K++ F +F+
Sbjct: 240 WDV--GPELREGKLQILLPEYRASKDVGLYAVYPSRQFLPAKVRVFIDFL 287


>gi|332161959|ref|YP_004298536.1| Lys family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666189|gb|ADZ42833.1| Lys family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 298

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 139/297 (46%), Gaps = 14/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GSF+  A QL +S S+ISR +S LE  +  +L  R  R L L+E G ++ 
Sbjct: 1   MAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGEEVF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  + + +   +      + S +P G +R++    +G+ ++  ++ EFL  Y  I +QLI
Sbjct: 61  KRCNAMLNAANSVMEISGQYSQEPEGLIRVSVPKAVGRFVVHPHIPEFLQRYSKIDVQLI 120

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LD++ +D   +  D  IR+  +P     ++ R+L+ I     A P YL     PL   +L
Sbjct: 121 LDDRYVDFIDENVDLVIRITNQP--PPGMVGRQLMNIEHLLCATPEYLSAQGTPLYPHDL 178

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALLP 245
            +H+ I  G+        F           + R +       L +++Q+  +GS    LP
Sbjct: 179 AQHSCIYLGETPGDARWKFRQGTKAITVAVKGRYAANHTGVRLDAVLQHIGIGS----LP 234

Query: 246 DYIVK---DNPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +  +       LV+++ +   + + S  ++  YP       KL+ F ++I  + RD
Sbjct: 235 YFTARTALQQGQLVQVLPEWRFISSYSGGLWLIYPPTRYLPAKLRVFIDYIVGRLRD 291


>gi|295676099|ref|YP_003604623.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295435942|gb|ADG15112.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 335

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 138/302 (45%), Gaps = 27/302 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+  YP+
Sbjct: 65  AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSTILPEFMHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ +D+  D  D A+R+R  P ++++++ R L         AP  L+    P
Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTEQMLVGAPSLLQQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L+  +L++   +     +P    D   +  +  P G       EPR   L     ++I +
Sbjct: 185 LTPADLNRFETLD----VPTS--DGRHVYNLISPDGTRHAHEHEPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAFRN 288
             + G GIA LP+ +         +   +++P     SF     Y   +   G + A R 
Sbjct: 236 AVLAGVGIAALPEMMYG-----AALRAGLLSPVMPGWSFPTPQLYAVFVSRQGMVPAVRA 290

Query: 289 FI 290
           F+
Sbjct: 291 FV 292


>gi|254521894|ref|ZP_05133949.1| regulatory protein, LysR:LysR, substrate-binding [Stenotrophomonas
           sp. SKA14]
 gi|219719485|gb|EED38010.1| regulatory protein, LysR:LysR, substrate-binding [Stenotrophomonas
           sp. SKA14]
          Length = 301

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 10/248 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F   ARSGSFT AA+ L +S+S++ + I+ LE  +G++LF+R  R + LT  G  
Sbjct: 8   NGLVTFVTTARSGSFTEAADALGISRSAVGKAIARLEARLGVRLFHRTTRRIALTTDGEA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   +    ++   +  L  + + PSG+LRI      G+ ++   L      YPD+Q+ 
Sbjct: 68  YYASCAAALEEISAAEACLGSAGL-PSGRLRIDMPSSFGRLVVLPVLLRLCRQYPDLQLT 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +  +D   +  D  IR     Q+  L+ R+L    +   AAP YL+    P +++E
Sbjct: 127 MTFTDHFVDPVEEGIDLLIRFGGLHQAEHLVARRLGRQRLVTCAAPAYLRAHGTPQTVEE 186

Query: 186 L-DKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIA 242
           L  + +++ F     +  +   W    D   G   P  +  Q+N   +++   + G GI 
Sbjct: 187 LAQQRSIVGF-----RHGQPVAWRIGSDDAEGTFIPN-AAYQLNDGDAVIDGAIAGLGIC 240

Query: 243 LLPDYIVK 250
            +P+ +V+
Sbjct: 241 QMPESLVR 248


>gi|182678419|ref|YP_001832565.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634302|gb|ACB95076.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 305

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 15/251 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V R+GSF+ AA +  ++ S+I RQI  LE ++G+ L  R  R LTLT+ G +LH
Sbjct: 9   LSTFVDVVRAGSFSGAARRRAMTPSAIVRQIDTLELDLGVALLVRSTRALTLTDAGRRLH 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L  T  E+       SG LRIA     G+  +   L      +P ++++L 
Sbjct: 69  ERALQLLDDLADTHAEVSAFDGSVSGTLRIACFPTFGKRYVLPVLGTLQAEHPSLKVELD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D  ++  D  +R+ + +  S+LI  KL  +     A+P YL     P    +L 
Sbjct: 129 LTERLADPVLERLDVVVRMGQ-LSDSTLIATKLAPLTRLLVASPAYLAQAGVPGGTVDLA 187

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEP---RISCLQVNSYLSIMQYCVLGSGI 241
            H L+      DL+        W   +  P G     R+   + + + ++    V G GI
Sbjct: 188 SHRLLDKLHGADLL-------GWREVLGCPAGHAGNGRV-VFRSDDFEALRAAAVAGMGI 239

Query: 242 ALLPDYIVKDN 252
           A L  ++V  +
Sbjct: 240 AFLSSWVVGPD 250


>gi|78059647|ref|YP_366222.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964197|gb|ABB05578.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 313

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + E  ++  KPSG+L +  T   GQ  +   +  +   YP + ++L 
Sbjct: 67  DRCQRILGYIEEAESEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P +++EL
Sbjct: 127 LSQHVPDIIDEGYDVSLQLSATELPDSGLVSQRLGEVHSVLCASPAYLKERGTPRTVREL 186

Query: 187 DKHNLITF-GDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           D H  +     + P+    ++  +   T D P+ +      QVN   ++      G GI 
Sbjct: 187 DGHACLQIVTPVFPRDRWHLDGPDGPETFDLPLPD-----FQVNIADALGAALRAGLGIG 241

Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ D      TVY  Y        K++ F +F+
Sbjct: 242 SLPMSSALPALASGALVRVLPDYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292


>gi|85706768|ref|ZP_01037860.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
 gi|85668826|gb|EAQ23695.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
          Length = 323

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 139/300 (46%), Gaps = 16/300 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 33  NWDEVRTAYNVARIGTVSGAAEVLGVHHATVIRHIDALEERLGVKLFQRHARGYTPTEAG 92

Query: 64  SKLHRV---TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             L RV   T + +++L   +I+ Q + V  SG+L + T+I    +LL   L  F   YP
Sbjct: 93  DDLLRVAQATDDQFNQL-AGRIKGQGNDV--SGEL-VVTSIGGLSHLLVPVLAAFQHDYP 148

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + ++ +  ++   +    A  AIR    P Q  +++Q          YA+  Y+     
Sbjct: 149 GLVVRYLTGDRLFRLEYGEAHVAIRAGSVPDQPDNVVQ-PFFQQQFTLYASEGYVARYGL 207

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P   ++L KH  I   D  PK    F  WL   D   GE  +   +     +     + G
Sbjct: 208 PKGTEDLAKHRFIGADD--PKTRAPFLRWLQ--DNVPGEAIV--FRSGDVHAQRNAILAG 261

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +GI         + P L+++M      +  ++      L  T K++AF + +  +A  W+
Sbjct: 262 AGIGFTSVLQAAEMPGLIQVMPPRPEWAAPLWLVTHMDLHRTTKVQAFLSHLKERAAAWQ 321


>gi|293393832|ref|ZP_06638139.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291423659|gb|EFE96881.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 287

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 126/276 (45%), Gaps = 19/276 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  L+ F V+ARSGS + AA +L    +++ R+++ LE  + + L  R  R   LT+ 
Sbjct: 2   IDWQDLKHFVVLARSGSLSAAARELGCDHATVGRRVAALEKSLALPLITRLPRSTPLTQH 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +  + +EV  + +  +  ++ ++      +R++    +    +   + EF  +YP I
Sbjct: 62  GRVIAGLAAEVEQQTQAIERYVRATAETRQATVRVSAPPSVAARAIAPRMAEFQQVYPHI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPL 181
            + L  +    ++    AD A+R+ +P Q   L QR  + I  +A YAAP Y        
Sbjct: 122 TLALSGEAHLAELDRGAADIAVRMVRPQQPDLLTQR--IGIMRYALYAAPDY-------A 172

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           S+ E   H  +T+     +          V DRP+        Q +   S+++    G G
Sbjct: 173 SLPEA-AHRFLTYDARYRQQPHQQWLQQLVNDRPV------VFQASDLFSLIEAARSGLG 225

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFC-YPE 275
              LP ++  D+P L+++   +  P+  ++   YP+
Sbjct: 226 ATALPTFVADDDPLLIKLPTAIPAPTRELWLVTYPD 261


>gi|254489769|ref|ZP_05102964.1| LysR substrate binding domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224464854|gb|EEF81108.1| LysR substrate binding domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 301

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 134/293 (45%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F  +A + + + A  ++ LS +  S  I+ LE  +G++L +R  R ++LTE+G  
Sbjct: 4   DHLKLFTRIAVTENISAAGNEIGLSPAVASSYINKLEKSLGVRLVHRTTRQVSLTEEGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   +E  +  +      PSG LRIA         L   LK+F   YP++++ 
Sbjct: 64  FLPHAREVLESVEAARSSVGAGESIPSGTLRIAAPASFAHMHLIPVLKDFTERYPELKLD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+     D AIR    ++ S+LI RKL        A+P YL    EP++  +
Sbjct: 124 LRLSDTIVDMVEGGFDVAIR-NAELKDSNLIARKLAPDSRVLCASPEYLAKYGEPVTPDD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H+ IT   L         W      P G+  +   S ++V++  ++   C  G G+ 
Sbjct: 183 LKDHHCITLTGL-------DTW--HFHTPTGQVSVKPDSQIRVDNGEAVRDACAHGLGLT 233

Query: 243 L---LPDYIVKDNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +      Y +     LV+++ED  +  +  ++  YP +     K+  F  ++ 
Sbjct: 234 INSTWSAYELLSQGELVKVLEDFPLVCNTAIWAVYPSSRLLAPKVSVFIEYLI 286


>gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151279887|gb|ABR88297.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 361

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 139/293 (47%), Gaps = 18/293 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++AR G+ + AA  L ++  + +++++ LE+ +G++L  R  R ++LT +G   
Sbjct: 64  ELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSEGEIY 123

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +  +++  +  +      P G LR+  T+  G+  +   + EF+  YP +++Q 
Sbjct: 124 LGYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQVEVQF 183

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +K ID+  +  D AIR    +  + L  RKL++      A+P YL+    P ++ +L
Sbjct: 184 EVSDKPIDLVENGFDLAIRF-GTLPDTRLNARKLMSNRRFLCASPIYLERHGTPQTLADL 242

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSG 240
            +H  IT            +  A   R   + R   ++V S LS      ++ + +   G
Sbjct: 243 SRHRCITH--------RQNDEAAATWRFTRDGRNEVIKVESALSSNDGDIVLGWALDAHG 294

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +  ++ +     +  L  ++ D + PS  ++  YP     + + +AF +F+
Sbjct: 295 ILIRSEWDLAKYVKSGRLKIVLPDYVLPSADLFVYYPNRRNQSTRARAFIDFL 347


>gi|88861384|ref|ZP_01136014.1| LysR family transcriptional regulator [Pseudoalteromonas tunicata
           D2]
 gi|88816650|gb|EAR26475.1| LysR family transcriptional regulator [Pseudoalteromonas tunicata
           D2]
          Length = 311

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 104/187 (55%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V + GSF   A+ L L +SS+S++I+ LE  +G++L  R  R L LT+ G +L 
Sbjct: 15  LYLFRRVTQLGSFQATADALQLPRSSVSKKIAQLEQHLGLRLLQRSTRQLNLTDAGKELL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +T  +   L  T    +++  KPSG+++I+++  +GQ  L   L +   L+P+I I + 
Sbjct: 75  IITDSLTDLLSNTAKLTEQAQAKPSGRVKISSSTLIGQRYLLPLLPDLKRLFPEIVIDIN 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+     D A+R+ + +  SSL+ R++       +A+P YL++  +     +L 
Sbjct: 135 LDDRVVDLIELGIDIALRVGQ-LPDSSLVARQIGIKSWACFASPAYLQDAAKLDKPSDLS 193

Query: 188 KHNLITF 194
            H  I F
Sbjct: 194 AHQCIIF 200


>gi|218462975|ref|ZP_03503066.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Kim 5]
          Length = 298

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 129/298 (43%), Gaps = 23/298 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR GS T A ++L ++Q+++S QI  LE  VG  LF R  R + LTE 
Sbjct: 7   FPLNALRVFEAAARLGSITKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTET 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E +  L       ++S     G L I++T       L   L  F L +P I
Sbjct: 67  GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCRE 179
            ++    +  ID S +  D AIR         L   +L+ +      +P   +     RE
Sbjct: 124 AVRFQASSDIIDFSREQIDVAIRWGDG-NWPGLTLHRLMGLEFTPMLSPKLAEAAGGIRE 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCV 236
           P   ++L K +L   GD+  K   +   +   D   RP  +     ++ ++ +S      
Sbjct: 183 P---RDLLKFDLFDAGDIWWKQWFEAAGVTETDLDRRPRNQLGSQAVEADAAMS------ 233

Query: 237 LGSGIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G G+A+L          L R+    E   +     +  YPE  +N  K+KAFRN+I 
Sbjct: 234 -GHGVAILNPAFYAAEIALGRLYQPFELTRSDGKAYWLAYPENRRNLPKIKAFRNWIL 290


>gi|161521084|ref|YP_001584511.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345134|gb|ABX18219.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 339

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 129/289 (44%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  A G TLT 
Sbjct: 31  LNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEASLGTLLFDKSRAEGFTLTA 90

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P 
Sbjct: 91  EGQRLVAYADAMETTVQSACDQVAHTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHPR 150

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+     + ++   AD A+ L +P +    +  KL    +  YA   YL +     
Sbjct: 151 VTVDLLPVPHFVSLTKREADLAVTLERP-ERGPYVCTKLCDYQLRLYATRDYLASHPPIA 209

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I++ D +    E       V       R + +   S+ ++      G G+
Sbjct: 210 GTDDLARHTFISYVDDLAFSSELLYLERAVPGATAGLRTTSVIAQSFAALH-----GGGL 264

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I    P LV ++ D +  +   +    E L+   ++ A  +++
Sbjct: 265 AILPCFIAAAQPALVPVLPDQVVVTRCFWLTCREDLRKLRRVTALWDYL 313


>gi|83643412|ref|YP_431847.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83631455|gb|ABC27422.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 294

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 135/287 (47%), Gaps = 12/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F +VAR G F+ A +     ++++SRQ+  LE ++GI+L  R +R   L+E+G  
Sbjct: 8   DALAYFDLVARHGGFSRAEQASGKPKATLSRQVRRLEDQLGIRLINRDSRAFALSEEGRW 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           LH  T ++   L  T   L        G+LR++  +  G  ++     EF   YP+IQ++
Sbjct: 68  LHERTRDLLGDLNETVTALTHDRAPARGRLRVSCPMMFGHMVMGRRAAEFAQAYPEIQLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + ++++++D+  +  D  IR+  P   S L+ R ++    H  A     +   E   +  
Sbjct: 128 VTVEDREVDLIEEGYDVVIRV-NPRPDSQLVGRCILRNVQHLIAPAGLPQPTDETAPVPA 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + + N  T  + I + ++  N  A + R       S L++ S L      + G  +A+LP
Sbjct: 187 VARSN--TPDERILRVLDGQNERAYLLR-------SALRLPSPLMQRDAVLTGGVVAVLP 237

Query: 246 DYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +V  +     +++   + TP   V+  +      + ++KAF  F+
Sbjct: 238 YALVAQDLAQGTLVDWGRLPTPPVEVWALHASRRLTSARIKAFIEFL 284


>gi|241204239|ref|YP_002975335.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858129|gb|ACS55796.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 297

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 127/276 (46%), Gaps = 15/276 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR  SFT AA +L +SQS++S  +  LE  +GI+L  R  R ++LT+ G +
Sbjct: 7   NDLMAFLAVAREKSFTRAAAKLGVSQSALSHVVRQLEARLGIRLLTRTTRAVSLTDAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +     + ++E     + E   KP+G +RI  +      ++   L+ FL   PDI+++
Sbjct: 67  LFQGVGPHFDEIEAQLETITEFREKPAGNIRITASDHAINWIIWPKLQRFLPNNPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N   DI  +  D  +R+ + +    +  R           AP Y      P   Q+
Sbjct: 127 LMRENGLSDIVTERFDGGVRMGEQVAKDMISARIGPDFPFAVVGAPSYFDGNGVPEHPQD 186

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +HN I     T+G       ED N      R  G+   +    NSY S+ +  + G G
Sbjct: 187 LVRHNCINERLPTYGGFWAWEFED-NGKEIRIRVEGQLAFN----NSYQSV-EAALDGLG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           +A +P+ +   +     L R++E   +P +  Y  Y
Sbjct: 241 LAYVPEDVALPHIAEGRLRRVLE-AFSPHWDGYHLY 275


>gi|184157808|ref|YP_001846147.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332876496|ref|ZP_08444263.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209402|gb|ACC56800.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322508123|gb|ADX03577.1| Transcriptional regulatory protein [Acinetobacter baumannii 1656-2]
 gi|323517697|gb|ADX92078.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735354|gb|EGJ66414.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 296

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT  G K
Sbjct: 5   DCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLNRTTRQMNLTSCGEK 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP I+I 
Sbjct: 65  FYQHCKVILSEFEWATYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPSIKID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQ 184
           L + ++ +D++    D  IRL     + SL   K++ T   + YA P Y      P S++
Sbjct: 125 LFMTDQLLDVNQHKFDLTIRLDG--SAPSLANSKILNTYQRYLYATPEYFNQHGLPNSLE 182

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240
           EL +H  LI + D   K +          +   E   +C  V   N+   ++  C+   G
Sbjct: 183 ELKEHKFLIYYQDSRHKKL-------IFQKDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+
Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFL 288


>gi|157370446|ref|YP_001478435.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157322210|gb|ABV41307.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 303

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 95/186 (51%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AA +L ++ S++S+ +  LE  +G+ L +R  R L LTE G+  H
Sbjct: 1   MAVFATVVAEGSFAGAARRLGMTPSAVSQHMRSLEKALGVPLLHRSTRRLALTEAGAAFH 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  L E      G+LRIATTI +G   L   L   L  +P + ++++
Sbjct: 61  PGCEAMLFQAQQAEQRLAELRDTLVGELRIATTIGIGGRPLAEALAPLLQAHPKLTLRVL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D++ +D+     D A+R+ + +  +++I   L    M   AAP YL     P + Q+L 
Sbjct: 121 ADDRIVDMIEQRIDIALRVNRQLADANMIAHPLAEWPMVLCAAPRYLSQYGVPEAPQDLV 180

Query: 188 KHNLIT 193
           +H  I+
Sbjct: 181 QHRWIS 186


>gi|309788598|ref|ZP_07683199.1| uncharacterized HTH-type transcriptional regulator yeaT [Shigella
           dysenteriae 1617]
 gi|308923529|gb|EFP69035.1| uncharacterized HTH-type transcriptional regulator yeaT [Shigella
           dysenteriae 1617]
          Length = 307

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 142/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P  +     +   D P G  ++        ++V   LS      + Q
Sbjct: 187 LSA---------LPCLL-----IKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVSENIASGHLVQVLLEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|254449980|ref|ZP_05063417.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198264386|gb|EDY88656.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 310

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 125/263 (47%), Gaps = 10/263 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  + ++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISSLEEHLNVRLFQRTTRSLTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++T + ++   +  P G L +A  + +G+ L+   + EF+  YP
Sbjct: 60  EQGRAFYTGAVAVLEAVDTAEGQVAGITDNPKGSLYVAAPLGVGRRLIAPLVPEFVRDYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I+L L ++ +D++ +  D +  L +P  S+  I + +        AAP Y+     P
Sbjct: 120 LIDIRLRLTDRKVDLTTEGLDISFFLGEPADSNLRI-KPIADCDRVLVAAPRYIAERGNP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
           +    L  D HN +      P   E F W L T D P    R+S   + +    + ++ +
Sbjct: 179 VDGTALVKDGHNCLNL--RYPGAPE-FQWRLQTSDGP-QRFRVSGRYECDDGDVLTEWAL 234

Query: 237 LGSGIALLPDYIVKDNPNLVRIM 259
            G GIAL P + V +  N  R++
Sbjct: 235 AGEGIALKPVFEVAEYLNAGRLV 257


>gi|206563006|ref|YP_002233769.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039046|emb|CAR55009.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 319

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 136/290 (46%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  + G TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVANTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +   ++  KL    +  YA   YL N    
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATRDYLANHAPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +       N L  +DR +     + L+  S ++ +   + G G
Sbjct: 190 TCTDDLAQHAFISYVDDLAFS----NELLYLDRAV-PGATAGLRTTSVIAQVFAALQGGG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++    P LV ++ + +  +   +    E L+   ++ A  +++
Sbjct: 245 LAILPCFMAATQPALVPVLPNDVVVTRCFWLTCREDLRKLRRVTALWDYL 294


>gi|187930944|ref|YP_001890928.1| transcription regulator, LysR family [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187711853|gb|ACD30150.1| transcription regulator, LysR family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 298

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 19/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
              FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT +G  L 
Sbjct: 12  FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71

Query: 68  RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                + ++++  + +L ES  K PSG L+I+T+    QN+L   +KE+   +  ++I++
Sbjct: 72  NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSLFAQNILINLIKEYSKKFSKVKIEV 130

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++ K  +   + AD  + +   P +  +++ RK+ T      A+P Y+     P +I +
Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--NIVARKIATTRYVLCASPAYINKNGSPSNISD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242
           L  HN I     +         L  + +    P+   S +  N+ +  ++ CVL   GIA
Sbjct: 189 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +YIVK+   N  L+ +++D       +Y  YP+      K+K F N +
Sbjct: 241 QFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLV 291


>gi|170770092|ref|ZP_02904545.1| transcriptional regulator, LysR family [Escherichia albertii
           TW07627]
 gi|170121049|gb|EDS89980.1| transcriptional regulator, LysR family [Escherichia albertii
           TW07627]
          Length = 307

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 144/305 (47%), Gaps = 41/305 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++           
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIA---------- 176

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATV-----DRPIGEPRI------SCLQVNSYLS---- 230
             +H L       PK + D + L  +     D P G  ++        ++V   LS    
Sbjct: 177 --QHGL-------PKHLTDLSALPCLVIKERDHPFGVWQLHNKDGHHAIKVTGPLSSNHG 227

Query: 231 --IMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
             + Q+C+ G GIAL   + V +N    +L++++ +   P+  V+  Y   L  + K++ 
Sbjct: 228 EIVHQWCLDGQGIALRSWWDVSENIASGHLLQVLPEYYQPA-NVWAVYVSRLATSAKVRI 286

Query: 286 FRNFI 290
              F+
Sbjct: 287 TVEFL 291


>gi|33602709|ref|NP_890269.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33577151|emb|CAE35708.1| probable LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 306

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            DWD LR F  VAR+   + AA +L +  ++++R++  LE E+   LF +  + G  LTE
Sbjct: 2   LDWDSLRYFLEVARTQRVSAAARKLGVEHTTVARRVRALEAELDSLLFEKSRSAGYVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   + T +  L       SG +RI  T   G  +L     +F   YP 
Sbjct: 62  DGQRLFVFAEQMESTVHTARENLSGIGQALSGHVRIGATEGFGSYVLTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    +  KL    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCTKLCDYTLMLYGTPAYLARHAPIR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  HN I + D +    E   +L  V   +   ++  L+  S ++     + G  +
Sbjct: 181 ERADLAGHNFIGYVDEL-LFSERLRYLEDV---LPNSQV-VLRSTSVIAQYHAALQGQSL 235

Query: 242 ALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I   +P L  ++ D   IT SF +Y C+ E L+   ++ A   F+
Sbjct: 236 AILPCFIAAQDPRLTPVLPDDIAITRSFWMY-CH-EDLRRLKRVSALWEFM 284


>gi|299770598|ref|YP_003732624.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700686|gb|ADI91251.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 301

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 130/262 (49%), Gaps = 16/262 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+  A    ++ S++S+ IS LE  +G++L  R  R   LT +G + 
Sbjct: 11  ELAIFIRVVELGSFSAVARACDMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +     + + L+    EL++S      P G++RI T++    + L   +  F   YP I+
Sbjct: 71  YEQGIHILNNLD----ELEQSVTANHMPQGRIRIHTSLSYWTHFLLPCISLFNECYPQIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  L ++ I++     D AIR   P++SS+L+ R L +   H   +P Y++    P   
Sbjct: 127 LEAHLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTQKHYVCSPAYIEKYGCPQHP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +EL  H L+     +    ++  WL   D + I       L+VN   +I+Q  + G G+A
Sbjct: 186 EELYAHQLLD----VSYQRQNKTWLFKKDEQEITLAPTQVLRVNHGEAILQLALAGVGVA 241

Query: 243 LLPDYIVK---DNPNLVRIMED 261
            L ++ V+   +   LV+I+ED
Sbjct: 242 QLNEFQVRKALEQKLLVKILED 263


>gi|209515971|ref|ZP_03264832.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503629|gb|EEA03624.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 330

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 96/188 (51%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF+ AA  L LS S++S  +  +E+ + ++LF R  R + LTE G +L
Sbjct: 13  ELTAFITIAEQRSFSAAARVLGLSPSALSHAMRNMESRLDVRLFNRTTRSVALTEAGEQL 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R        L+    E+  +  +PSG +RI+ +    + L++  L +F   YP+I ++ 
Sbjct: 73  LRRVRPALADLDDAVGEVTAARNRPSGTIRISASESSAKQLVRHVLPDFFARYPEIHVEF 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D++ +DI  +  D  +R+ + +    +  R    + + A A+P YL     P +  +L
Sbjct: 133 VVDSRLVDIVAEGLDAGVRVFEDVPRDMIAIRFGRDMRLGAVASPDYLARHPAPKAPHDL 192

Query: 187 DKHNLITF 194
            +H  I F
Sbjct: 193 MQHRCIRF 200


>gi|330876172|gb|EGH10321.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 301

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 139/301 (46%), Gaps = 33/301 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++TE G +
Sbjct: 7   DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNIGVVLLHRSTRQVSITEDGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++  LG+  +   L E    YP + I+
Sbjct: 67  VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGLGRRFVAPALSELAARYPKLDIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L +      A+P Y++    PLS+ E
Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNDI-APHLRARHLASNWRVLCASPAYVQQHGVPLSLAE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ------VNSYLSI------MQ 233
           L  H+ +   +               DRP G   ++ LQ      V   LS        Q
Sbjct: 186 LANHDCLVIKER--------------DRPFGIWHLNGLQGAETVKVTGSLSTNHGEIARQ 231

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
           +C+ G G+ L   + V+ +    R+++  + P +     ++  +   L ++ K++    F
Sbjct: 232 WCLDGRGVLLRSLWDVRTDLAEGRLIQ--VLPEYRQDADIWAVHTSPLMSSAKVRVTVEF 289

Query: 290 I 290
           +
Sbjct: 290 L 290


>gi|320325528|gb|EFW81590.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 328

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 140/293 (47%), Gaps = 23/293 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  SGSF+ A   L LS S++SRQI  LE  + + L  R  R L +TE G  +  V
Sbjct: 16  VFRQVVVSGSFSGAGRTLGLSPSAVSRQIDRLERILNVALVTRSTRNLFITESGQDVFNV 75

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            SE+    ++    ++ + V+P G LR+   + +G+ LL  ++ EFL +YP I++ L   
Sbjct: 76  ASEIASATDSLMGRIEAAMVEPEGLLRVTAPVTIGKILLSSSIAEFLRVYPKIKVDLNFT 135

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +DI  +  D ++R+        ++ RKL  +     A    + +   P   +++   
Sbjct: 136 DNIVDIYKEKFDLSVRITS-TPPHDMVARKLFDVEYLLVATTGEV-SFEIPSHPEDISST 193

Query: 190 NLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +IT     FG+ +     D+++          PR   L  N+  +++     G+G+ +L
Sbjct: 194 PMITPSDSFFGEEMTFNHTDYSYTVR-----STPR---LMANNSETLLGAIFSGTGVGVL 245

Query: 245 PDYI---VKDNPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+++   + ++  L  I+ +     +TPS   +  +P  +  + K +A+  ++
Sbjct: 246 PNFLAIPLIESGQLRSILPEWQINNVTPSSVFFLSHPSKMI-SAKARAYIEYL 297


>gi|295701042|ref|YP_003608935.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440255|gb|ADG19424.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 324

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 1/183 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A  GSF  AA  L +S  + S  +  LE  +G+++F+R  R L+LT++G +L 
Sbjct: 7   ISVFVRTATLGSFRRAAVDLGISPQAASHAVMQLEKSLGVQVFHRTTRKLSLTDEGQRLL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +        L +   + + S  + +G L ++    LG+ +L   + EF  LYPD+QI + 
Sbjct: 67  QSVEPALAMLSSAIDDARRSKEEVAGPLCVSAPTALGRTVLLPLILEFAALYPDVQIDVR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+   D+  D AD   R   P  S   I R+L+ I +   A+P YL+    P ++ +LD
Sbjct: 127 FDDHFTDLVSDRADVGFRGGSP-PSGGAIARRLLPIQLIVCASPAYLERYGAPKTVNDLD 185

Query: 188 KHN 190
            H 
Sbjct: 186 AHR 188


>gi|308188291|ref|YP_003932422.1| HTH-type transcriptional regulator ltrA [Pantoea vagans C9-1]
 gi|308058801|gb|ADO10973.1| Probable HTH-type transcriptional regulator ltrA [Pantoea vagans
           C9-1]
          Length = 305

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 122/273 (44%), Gaps = 11/273 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QLHLS SSIS+ ++ LE  + +KL  R  R + LTE G   +
Sbjct: 7   MSVFARVVELGSFTAAARQLHLSVSSISQIVAKLEDALQVKLLNRSTRSIGLTEAGKIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +      +L   +  P G LRI ++  + QN+L G   + L  YP + + L+
Sbjct: 67  QGCRRMLAEATQVHEQLYAFNNTPIGVLRIGSSSTMAQNVLAGMTSDMLREYPGLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   ++ SSL  R+L  + M   AA  YL     P    ++D
Sbjct: 127 TGVPAPDLIADGLDLVIRV-GALKDSSLFSRRLGAMPMVVCAAKSYLAQHGTPEKPGDID 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             + + +        E       V R   + R      N  L+++++   G+GIA +P  
Sbjct: 186 NFSWLEYSVRPDNNFELIAPEGLVTRLAPQGRFVT---NDSLTLIRWLKSGNGIAYVPMM 242

Query: 248 IVKDNPNLVRIMEDVITPSF-----TVYFCYPE 275
            V D      I  D++ P +      VY  Y E
Sbjct: 243 WVIDEITAGEI--DILFPHYQSDPRPVYALYTE 273


>gi|261251033|ref|ZP_05943607.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
 gi|260937906|gb|EEX93894.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
          Length = 299

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 128/283 (45%), Gaps = 8/283 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE   L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVEMGSFSKVAEANSLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +    V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LTQGAKTVKQATQEAMDAVSGFGENVSGHIKMSVPSISGDLILADAVAEFCNLHPGLSVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P   Q+
Sbjct: 124 MSLDNRFVDLVEGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNSKPNDPQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   W    ++     ++S     ++  ++ +  + G G+A +
Sbjct: 183 LTLHNCLQYAYQTTGASE---WEFKAEQGNYIVKVSGSFSTDNATALRKAALGGHGVAYV 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           P  +V     N  LV +  + +     +Y  YP   +   K+K
Sbjct: 240 PRCLVYHDIRNGQLVDLFPEQVGKRLGIYAVYPFTRQPPNKVK 282


>gi|254197952|ref|ZP_04904374.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|169654693|gb|EDS87386.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
          Length = 306

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 4/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G + +
Sbjct: 11  LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
             T++ Y ++   +  L ++  +P G LRI + + L ++++  + L EF   YP + +++
Sbjct: 71  DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     P  + +L
Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGVPSKLADL 189

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            +H  I F    PK      W
Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208


>gi|325168294|ref|YP_004280084.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064017|gb|ADY67706.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 312

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 132/283 (46%), Gaps = 7/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   +  GSF   A+ + +S   +++ +  LE  +G  L +R  R  +LT+ G   +
Sbjct: 19  MAVFVKASDLGSFAATAKAMEMSPQMVAKHVVFLEDRLGTALLHRTTRRQSLTDVGRVFY 78

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E  +    +   +P G LR+   +  G   L   +  +L  YPD++I L 
Sbjct: 79  DRCKQLLSDVEAAESVALDMRSQPKGVLRVNAAVTFGAFSLAPFVTRYLDRYPDMRIDLT 138

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D   +  +  +R+ + ++  SLI   L    + A A+P YL     P    +L+
Sbjct: 139 LNDRFVDPLEEGFEVMVRIGE-VEDPSLIALPLAPYRLIACASPDYLIRRGTPRIPLDLE 197

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ + +GD          W  T      E RIS  ++ N + +++   + G GI L P+
Sbjct: 198 QHDCLAYGD--GPSSTPCRWQFTRSGKSEEVRISGRIRSNDWKALLHASIAGYGITLGPE 255

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            ++        LV+++ D   PS  ++  YP   + T K+++F
Sbjct: 256 SVLNAEITAGRLVQVLPDHEGPSRPMHVIYPVGRRPTAKVRSF 298


>gi|296159346|ref|ZP_06842171.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295890330|gb|EFG70123.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 297

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 17/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++RVF  +A   SFT A++ L + +++++  +  +E  +G +L  R  R + LT  G 
Sbjct: 4   FEEMRVFVRIAERQSFTRASDDLQIPRATVTNLMKRMEQRLGARLLERTTRTVRLTHDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   +E  + E   S++ P G LR+     L ++ +   L  FL  +P+I++
Sbjct: 64  AYYRRCVRLIADME--EAEGSFSNLAPKGLLRVNLQGTLARHFVVPALPAFLARFPEIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP    
Sbjct: 122 TIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLAAYGEPADPS 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L  H  + +     G  +P    +FN      R +     S + V          + G 
Sbjct: 181 ALSTHRAVNYVSSATGKAVPL---EFN---VAGREVAMVLPSAVSVTGTELYTGSALAGL 234

Query: 240 GIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P Y V       R   I+ D   P   V   YP+  + + +++ F  ++
Sbjct: 235 GIVQVPQYRVAAELAAGRLKIILADFPPPPMPVSVLYPQNRQLSSRVRVFAQWL 288


>gi|241204988|ref|YP_002976084.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858878|gb|ACS56545.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 297

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 127/273 (46%), Gaps = 6/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR+ SFT AA +L +SQS++S  I GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLIAFLAVARAQSFTKAAGKLGVSQSALSHTIRGLEERLGLRLLTRTTRSVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L         ++E+    L     KP+G +RI         +L   L++ L  YPDI ++
Sbjct: 67  LLVSIGPRLDEIESELAALSAFREKPAGTIRINAGEHAADAVLWPALEKLLPDYPDINVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+D    DI  +  D  +RL + +    +  R    + M    +P Y     +PL+ QE
Sbjct: 127 IIVDYGLTDIVAERYDAGVRLGEQVAKDMIAVRIGPDMRMAVVGSPAYFGTRPKPLTPQE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244
           L  HN I     +P     + W    D      R+    V + +++    VL G G+A +
Sbjct: 187 LTDHNCINL--RLPTYGSVYAWEFEKDGRELRVRVEGQLVFNNIALRLNAVLAGLGLAYM 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           P+ +V     +  LVR++ED   P    +  YP
Sbjct: 245 PENLVDAHLADGRLVRVLEDWCLPFSGYHLYYP 277


>gi|145642219|ref|ZP_01797786.1| lysR-family transcriptional regulator [Haemophilus influenzae
           R3021]
 gi|260583197|ref|ZP_05850976.1| transcriptional regulator [Haemophilus influenzae NT127]
 gi|145273079|gb|EDK12958.1| lysR-family transcriptional regulator [Haemophilus influenzae
           22.4-21]
 gi|260093754|gb|EEW77663.1| transcriptional regulator [Haemophilus influenzae NT127]
 gi|309973858|gb|ADO97059.1| Transcriptional regulator CrgA [Haemophilus influenzae R2846]
          Length = 295

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 125/269 (46%), Gaps = 12/269 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L VF  V  +GSF+ AA+QL ++ S++SR +  LE ++G+ L  R  R L LT
Sbjct: 1   MKTTSEELTVFVQVVENGSFSRAAKQLSMANSAVSRVVKRLEEKLGVNLINRTTRQLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++   +   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGLQYFRRVQKILQDMAAAEAEMLAVHEVPQGILRVDSAMPMVLHLLVPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+ L+     I++     D A+R  + +  S L  R L   H    A+P YL     P
Sbjct: 121 HIQLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSHFRVIASPDYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S + L  H  + F +  P  +  +  L     P    +IS     S   I++  C+ G 
Sbjct: 180 QSTEALANHQCLGFTE--PSSLNTWEVLDAQGNPY---KISPYFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFT 268
           GIA L D++V ++     I E  + P  T
Sbjct: 235 GIACLSDFLVDND-----IAEGKLIPLLT 258


>gi|254038228|ref|ZP_04872286.1| transcriptional activator TtdR [Escherichia sp. 1_1_43]
 gi|226839852|gb|EEH71873.1| transcriptional activator TtdR [Escherichia sp. 1_1_43]
          Length = 310

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEVVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|146338022|ref|YP_001203070.1| DNA-binding transcriptional activator GcvA [Bradyrhizobium sp.
           ORS278]
 gi|146190828|emb|CAL74833.1| Transcriptional Regulator, LysR family; putative Glycine cleavage
           system transcriptional activator (Gcv operon activator)
           [Bradyrhizobium sp. ORS278]
          Length = 306

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 129/290 (44%), Gaps = 12/290 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L+++Q++IS QI  LE E+GI+LF R  R L LT Q   
Sbjct: 8   NGLRAFEAAARHLSFTRAASELNVTQTAISHQIKRLEDELGIRLFLRQNRSLALTPQARD 67

Query: 66  LHRVTSEVYHKLE-TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +  L   T+  +++ + K    L ++T   L    L   L  F   +P I +
Sbjct: 68  YLPLVRAAFDDLRLATERLVRKDNAK---VLTVSTIASLAAKWLLPRLTAFQEAHPTIDV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++      +D   D  D AIR  +     ++    L+   +    +P  L+  +   S +
Sbjct: 125 RITTSTGLVDFRKDDVDAAIRYGRG-HWPAVRAEWLMADELFPVCSPALLQGTKPLRSPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H L+          +D+  WL     P+   R S L  +  L  +Q  + G G+A+
Sbjct: 184 DLAHHTLLQASG---GYDDDWRLWLTAAGLPVEMSRQSRLSFDLSLMTVQAAIDGLGVAI 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                V+D+     LV   E ++      Y   PEA  +  KLKAFR ++
Sbjct: 241 GRTAYVQDDIAKGRLVVPFEMMLPSDAGFYLVTPEARTDPPKLKAFRQWL 290


>gi|91777440|ref|YP_552648.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690100|gb|ABE33298.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 313

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 127/291 (43%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF      GSF  AA +  LS +   + +S LE E+  +L +R  R L+LT+ G   +
Sbjct: 7   LGVFVAAVEEGSFAGAARRFGLSAAMAGKHVSALEAELNARLLHRTTRRLSLTDTGQTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +    +  + E  +S     G LRIA  +  G   L   +  ++  +P + ++++
Sbjct: 67  ERSKRILEAFDEAKREASDSQGTARGVLRIAAPVTFGAMHLGEVVARYMEDHPHVNVEVL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+     D AIR+ K ++   L+ R+L    M   A+P YLK    P    +L 
Sbjct: 127 LGDRYVDLIDAGVDVAIRIGK-LEDPGLVTRRLAPCRMVVCASPAYLKRHGTPRKPDDLL 185

Query: 188 KHNLITFGDLIPKC----MEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +   + F + +        +  N    +D P       C +  N+   ++   + G+GI 
Sbjct: 186 RAQRLAFSEAVSAGDWTLHDRKNRAHVIDGP-------CRMTANNTQMLLASAIAGAGIV 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P ++      +  LV ++        T+   YP A +   K++ F +++
Sbjct: 239 YGPTFVFGAHIRSGELVALLPAYRAADLTIQAVYPSARRIPLKVRRFVDYL 289


>gi|77362280|ref|YP_341854.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76877191|emb|CAI89408.1| putative transcriptional regulator with periplasmic binding domain
           (LysR family, YafC, YeaT) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 312

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 99/180 (55%), Gaps = 1/180 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +   V   GSF  AAE  ++ +S IS+QIS LE E+G++L  R  R  +LT  G+++
Sbjct: 6   RLLMLLEVVEQGSFAKAAEIRNIDRSVISKQISRLEDELGVRLLNRTTRSFSLTAAGAEM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  +++   L  T    +    +P G L+I  +  +G+  LQ  + +F   +P ++++L
Sbjct: 66  IKKAADLRELLGETLRMAENYHQEPRGLLKITASTIIGRRYLQPVINDFQKRFPQVEVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +DI  +  D A R+ +P + SSLI RK+    +   A P ++K    P ++ +L
Sbjct: 126 RLDDRLVDIVSEGFDLAFRIGEP-KDSSLIARKIARNRLLILATPEFVKTYGMPKTMSDL 184


>gi|119776681|ref|YP_929421.1| LyrR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119769181|gb|ABM01752.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 299

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 132/290 (45%), Gaps = 12/290 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GS T AAE L +S+S +S+ +  LE  +G +L +R  R ++LTE G + 
Sbjct: 8   RMLVFASVVEQGSLTMAAEVLGISRSMVSQHLKKLEERLGCELLHRTTRRISLTEDGREF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E+       +   + +     G LR+   + LG++ L   + +F   YP+I++ L
Sbjct: 68  FHYCGELLQLARQAEAVTRPADEHLHGSLRVTAPVGLGEHNLLPLIGDFHRRYPNIRLTL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L++  +++     D AI+   P + S     KL +      A+P Y+    +PL    L
Sbjct: 128 MLEDSKLNLLEHQIDVAIQAGWP-EDSEFRAIKLGSFDEQLVASPEYVAAHGKPLHPDNL 186

Query: 187 DKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H  +      +PK     N      R    P ISC   NS   ++   + G G+A+LP
Sbjct: 187 QHHQWLAHASGHLPKTWTLHNGQGEEFRVRITPFISC---NSTNGLIAMALQGLGVAILP 243

Query: 246 DYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
           D +V  N +L     +++ P +      VY  +P       +++ F +F+
Sbjct: 244 DNLV--NEHLASGALELLLPDYHLREGGVYALHPYKENTPPRVRVFLDFL 291


>gi|330820088|ref|YP_004348950.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327372083|gb|AEA63438.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 300

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 8/255 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  +   GSF+    +  + Q ++S+QI+ LE  +G +L  R +R + +T+ G  
Sbjct: 5   DAIRLFVRLVERGSFSAVGREQGIGQPAVSKQIAALERHLGAQLLLRTSRRVAVTDAGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++    +  +  + E    P G +R+ T    G+  +   L EF   +P++ ++
Sbjct: 65  FYESARQLVEDFDAVESSVGERQQSPRGLVRLNTAPGHGRLWITPRLPEFFARHPEVTVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +  +++D+     D AIR  K +  SSLI R+L    +   A+  YL     P  + +
Sbjct: 125 LSVSERNVDLVGQGIDLAIRHGK-LVDSSLIARRLGETALVLAASRDYLAAHGTPARLDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           LD H  I F     +  E + W   V R      PR S L  ++   +    V G GI+ 
Sbjct: 184 LDAHRCIVFS----RDREPYPWALRVGREALSYRPRGSLLTGDAE-HVRAAVVNGLGISQ 238

Query: 244 LPDYIVKDNPNLVRI 258
            P ++++D     R+
Sbjct: 239 APLWLLEDEIRAGRV 253


>gi|255591949|ref|XP_002535633.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
 gi|223522451|gb|EEF26751.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
          Length = 289

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 18/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  +  SGS T A  +L ++   +S+ ++ LE  +  +L  R +R ++LTE G   H
Sbjct: 3   LRVFCEIVESGSLTAAGNRLGMAPPMVSKHLARLERSLAARLLNRTSRSMSLTEAGRLFH 62

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     + ++S  P G+L+I+  + +        + E+    P++++ + 
Sbjct: 63  EQAMQALEMLDAGVASVSQASGPPRGELKISAPVWIATPRFAALIAEYQQRCPEVRLDVH 122

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-----KNCREPLS 182
           L+N+ +DI  +  D A+R++    S SLI RKL  +  +  A P +L     K+      
Sbjct: 123 LENRMVDIVAEGFDLALRMKNDA-SQSLISRKLCEVQFYCVATPAFLARSATKSEAGAAQ 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  +   N + FG   PK      +LA  D+P+       ++ N         + G G A
Sbjct: 182 LPAMIMPNNLQFGR--PKMPAQGMFLAP-DQPV------AMRSNDTTLSYHAVLAGIGAA 232

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++V D+     LV   E   +    ++  YP       KL++F +F+
Sbjct: 233 FLPGWLVADDLASGRLVHSGEADKSYQGQLFAVYPSRRHQALKLRSFIDFL 283


>gi|221210743|ref|ZP_03583723.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221169699|gb|EEE02166.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 293

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 126/293 (43%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+ 
Sbjct: 8   NALRAFEVAARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                    H +      L    VK    L I+TT       L   L +F   +PDI ++
Sbjct: 68  YFSDVQRALHAIADATDRL----VKRRATLTISTTPSFASKWLIPRLAQFTDAHPDIDVR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D +      D  D AIR  KP     L    L  + + A  +P  L     P S + 
Sbjct: 124 VIADQQLATFRHDGVDLAIRYGKPPFGKHLAAHALFPLDVCAVCSPALLA---APASPRA 180

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    DL P       ++A +  P+       L+ N     +   + G GIAL 
Sbjct: 181 LAGHVLLHDAHDLWPA------FIAALPEPVDVDPHKGLRFNQTSLAIDAAIAGQGIALA 234

Query: 245 PDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D +V+ +    R+ +  D   P S   Y  YP   ++   +   R+++   A
Sbjct: 235 TDPLVERDIAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDTIAVMRDWMIGAA 287


>gi|115358811|ref|YP_775949.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284099|gb|ABI89615.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 301

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 29/303 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +  +S  I  LE +VG+ L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMTSFTRAAESLGIQKGRVSMVIRKLERDVGVALLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++  +++  Q     +  +  G+LR+    +L ++++   L + +  +P+++
Sbjct: 63  RAFYSRARDLLAEVQELQSMFSGNGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  PI   +LI R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRL-GPITDDTLIARPLGKLRMTNAASPGYLARYGIPHTL 181

Query: 184 QELDK------HNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIM 232
            +L        H  +T G   P       W    + P G+     P  S +QVNS  +  
Sbjct: 182 DDLRTQGHRMVHYTLTLGARHP------GW----EYPNGDGYASLPLPSAMQVNSVQTYH 231

Query: 233 QYCVLG-----SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
              + G     +G + L  +I  ++  LV ++ D+                 + +++AF 
Sbjct: 232 AAGLAGIGLIQAGYSALAHHI--ESGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFM 289

Query: 288 NFI 290
           ++I
Sbjct: 290 DWI 292


>gi|325168457|ref|YP_004280247.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064180|gb|ADY67869.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 296

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 128/287 (44%), Gaps = 24/287 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR G F  AA      ++++SR+++ LE  + I+LF R AR L LTE+G  L   T
Sbjct: 9   FNLVARHGGFGKAARASGRPKATLSRRVTELEAALQIRLFDRGARALKLTEEGRALSERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  +L+ T   +   + KP G+LR++  + L Q  +      F L YPD+++++  ++
Sbjct: 69  AVLLTELDETAAAIASGAEKPRGRLRVSAPLLLSQTAMGKIAAGFALKYPDVRLEITTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  IR+  P    SL+ R  +   +   A P  +                
Sbjct: 129 RAVDMIEEGYDLVIRV-NPAPDESLVGRAFLHDRLVVVAPPDIV---------------- 171

Query: 191 LITFGDLIPKCMEDF----NWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
           L + G  +P  +        W     +   + RI   L ++S + +      G G A LP
Sbjct: 172 LPSLGQPVPGVVRGGAGPETWNVMTTKGPAKIRIDPVLTLSSLIMVRDAVRAGVGAARLP 231

Query: 246 DYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +V  +     +M   DV      ++  YP     + ++ AF +F+
Sbjct: 232 ISLVSHDLAAGTLMHWGDVENSEIALWALYPSRRLLSARVSAFLDFL 278


>gi|318605989|emb|CBY27487.1| transcriptional regulator, LysR family [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 310

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 138/298 (46%), Gaps = 12/298 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++ +F  V  +GSF+  A QL +S S+ISR +S LE  +  +L  R  R L L+E G +
Sbjct: 11  SEMAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGEE 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + +  + + +   +      + S +P G +R++    +G+ ++  ++ EFL  Y  I +Q
Sbjct: 71  VFKRCNAMLNAANSVMEISGQYSQEPEGLIRVSVPKAVGRFVVHPHIPEFLQRYSKIDVQ 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LILD++ +D   +  D  IR+        ++ R+L+ I     A P YL     PL   +
Sbjct: 131 LILDDRYVDFIDENVDLVIRITN-HPPPGMVGRQLMNIEHLLCATPEYLSAQGTPLYPHD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALL 244
           L +H+ I  G+        F           + R +       L +++Q+  +GS    L
Sbjct: 190 LAQHSCIYLGETPGDARWKFRQGTKAITVAVKGRYAANHTGVRLDAVLQHIGIGS----L 245

Query: 245 PDYIVK---DNPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P +  +       LV+++ +   + + S  ++  YP       KL+ F ++I  + RD
Sbjct: 246 PYFTARTALQQGQLVQVLPEWRFISSYSGGLWLIYPPTRYLPAKLRVFIDYIVGRLRD 303


>gi|295700209|ref|YP_003608102.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439422|gb|ADG18591.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 341

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 4/242 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   GSF  AA +L + +S++SR +  LE ++  +L  R  R + LT +G   ++  
Sbjct: 39  FLAVVSEGSFAKAASRLGIGRSAVSRNVQKLEAQIDARLLLRTTRSMALTREGELFYQNC 98

Query: 71  SEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +    ++     +++E     P G+LRI +T   G+ ++   L  F   YPDI +  +L 
Sbjct: 99  NPGVERIVRALADMRELRQGPPRGQLRICSTTGFGRRIVAPLLSGFYTAYPDIALDFMLK 158

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  I+ + D  D A R  K +  S +I ++L  + M   A+P Y +    P S+++L  H
Sbjct: 159 DGPIEFTTDRIDVAFRDGK-LDDSQVIAKQLFPMQMIVCASPEYARAHGLPRSVEDLGMH 217

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I    +  +  E    +    R +    +  L  N    ++Q  + G GIA L  Y V
Sbjct: 218 RCINLRLVSGRIAEWEFKVGGASRKVVPKAVHVL--NDADLVLQAVLAGHGIAQLAAYQV 275

Query: 250 KD 251
            +
Sbjct: 276 SE 277


>gi|238754531|ref|ZP_04615885.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia ruckeri
           ATCC 29473]
 gi|238707162|gb|EEP99525.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia ruckeri
           ATCC 29473]
          Length = 302

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 13/296 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68
           VF  +   GS   AA+ + +S++ ++R ++ +E   G +L +R  R L+LT  G + L R
Sbjct: 9   VFVTIVDRGSMIAAADAMGMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTHAGETTLER 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   ++  E+  +  G LRI+ +  L Q  L   +  FLL YP + I L +
Sbjct: 69  CRKMLAFAQDMDLVDGLEND-ELRGLLRISCSQSLAQTALAVAVTAFLLRYPQVAIDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ I++  +  D AIR+   +   +LI R L T H    A+P YLKN   P + Q+L  
Sbjct: 128 NNRAINLVEERIDLAIRITNELD-PNLIARPLSTCHSVVCASPSYLKNKGMPQNPQDLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K +  F+             +S    N  + ++   + G+GIAL P Y 
Sbjct: 187 HNCLTY-SYFGKSLWHFDHHGVKSSVAVSGNLSA---NESVVLLSGALEGAGIALQPRYS 242

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298
                 +  LV+++ D    +  +Y  Y    +    L+   +++   F     W+
Sbjct: 243 AMPYLISGELVQLLPDFHPQAMGIYGIYTSRRQMPATLRTLLDYLIEWFATNEQWR 298


>gi|104779958|ref|YP_606456.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95108945|emb|CAK13641.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 298

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 13/251 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L+VF  V   GS + AAEQ+  + S++SR +S LE ++G  L  R  R + LTE+G  
Sbjct: 6   EELQVFVAVIDCGSISAAAEQIGQTPSAVSRTLSRLEDKLGTTLVNRTTRRMDLTEEGRF 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++  +++  +  L      PSG+LRI        + +   + EF   YP I+++
Sbjct: 66  FLERARQILEQIDDMEERLSMHHQTPSGRLRINAAAPFMLHAILPWIGEFRQQYPGIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D+  ID+     D AIR+ + +  SSL  R L    +   A+P YL     P ++++
Sbjct: 126 LNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARSLGCSPVQVLASPEYLARNGTPQTVED 184

Query: 186 LDKHNLITFGDLIPKCMEDFN-W---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           LD H L+ F  L     E  N W    A  DR    P+   L  +S  ++ Q  + G GI
Sbjct: 185 LDDHCLLGFSTL-----ESLNQWPLRHAQGDRWAIRPQ---LLASSGETLRQLAIAGEGI 236

Query: 242 ALLPDYIVKDN 252
             L  ++  ++
Sbjct: 237 VSLSHFMTHED 247


>gi|152985212|ref|YP_001349266.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960370|gb|ABR82395.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 309

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 134/292 (45%), Gaps = 7/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +G+F  AA QL +++S ++ +I  LE  +   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVAETGNFAKAAVQLGVTRSVVTHRIQQLEHFINAPLFHRSTRHVRLSEVGETYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +++     +   +++    KP+GKLR+        +     L EF  LYPDI++ +I
Sbjct: 67  KECADMVAGFNSLTEQMRNLRAKPTGKLRVQMLPGFAIDHFGPLLAEFTALYPDIEVDVI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++  D   +  D A ++  P Q+ +LI+RKL ++     A+P YL+    P    +L 
Sbjct: 127 VNDRLTDPIEEGFDIAFQMFPP-QAETLIERKLFSVRRLFLASPEYLQRHPAPQRPGDLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H +  +     +    F      D  +       ++ NS   +  Y + G+ +  LP  
Sbjct: 186 EHRIALYEGYPSRNRWQFQ---HGDETVELSLAGQVRSNSVHLLRDYALAGTALVCLPTL 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +     L+ ++ D    SF     +P   +   K++   +F+  +  D
Sbjct: 243 VAHADLASGRLLPLLVDYPLSSFNFSAVFPATQRRALKVRTLIDFLVERISD 294


>gi|71280276|ref|YP_271335.1| LysR family substrate binding transcriptional regulator [Colwellia
           psychrerythraea 34H]
 gi|71146016|gb|AAZ26489.1| substrate-binding transcriptional regulator, LysR family [Colwellia
           psychrerythraea 34H]
          Length = 300

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 139/283 (49%), Gaps = 10/283 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F ++  + SF  AA+   +S +++S++IS LE  +GI+L YR  R L+LTE G  L
Sbjct: 6   ELALFSLIVEAKSFNKAAQLAEISPAALSKKISKLEKNLGIQLLYRTTRRLSLTEAGEIL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  + ++  ++      +   S   SG +++      G+ +L   + EF  L+P + +++
Sbjct: 66  YSHSKDINKQVNDAVSAVSSFSEGLSGTIKMTVPTISGELILAQAVAEFCQLHPKLSVEM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+N+ +D+  +  D AIR    +  SSLI + L+  +     AP Y++    P + QEL
Sbjct: 126 RLENEFVDLIKEGQDLAIR-TGVLSDSSLIAKPLLQSNWIVCCAPSYIEKHGTPQTPQEL 184

Query: 187 DKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +HN +  T+ D   K   D+ + +  D             N+  ++ +  + G GI  +
Sbjct: 185 SRHNCMAYTYQD---KGAHDW-YFSQSDEAYYVKISGNFATNNSQALRKAALAGYGIVYV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           P   V D+    +LV+++ +       +Y  YP     + K++
Sbjct: 241 PRCSVYDDMQRGDLVQLLPEFHGRQLGIYAVYPYTKHQSQKVR 283


>gi|251789949|ref|YP_003004670.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538570|gb|ACT07191.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 302

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 133/295 (45%), Gaps = 19/295 (6%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  +   GS T AA+ L +S++ ++R ++ +E     +L +R  R L+LT +G  + +
Sbjct: 8   QVFVAITEQGSLTGAADALDMSRAMVTRYLAEMERWADARLLHRSTRQLSLTTEGDTVLQ 67

Query: 69  VTSE---VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              E   V  KL+    E  E    P+G +R+  +  L Q  L   +  +L  YP   + 
Sbjct: 68  YCRELLAVSQKLDRPARERME----PAGLMRLTCSPSLAQTTLVEAITAYLRRYPKTAVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +  +++  +  D AIR+   +  S LI R+L        AAP YL     P  ++E
Sbjct: 124 LQVASHTLNLIEERIDLAIRITSQLD-SGLIARRLGGCPSVVCAAPSYLAAQGTPQRVEE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ +T+     K +  F         I  P       N  L++++  + G+GI+L P
Sbjct: 183 LAVHDCLTYS-FFGKSLWQF---IRKGETIAVPVSGSFSANDSLTLLEAALNGAGISLQP 238

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            Y V D   +  L+ +  +V      +Y  Y    + +  L+A  +F+     DW
Sbjct: 239 VYSVTDLIASKRLIALFPEVQPQELDIYAVYHSRERMSPALRALVDFLA----DW 289


>gi|162146669|ref|YP_001601128.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209543338|ref|YP_002275567.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785244|emb|CAP54790.1| putative transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531015|gb|ACI50952.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 308

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 1/185 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  V  +GSF   AE+L +S+ ++S+ IS LE  +G  L +R +R  +LTE G
Sbjct: 6   DLEAWAIFAKVVETGSFARTAEELQISKPTVSKAISRLEHRLGSPLLHRTSRQFSLTETG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  + E +E +V P G +R+   +  G   L   L +F+  YPDI 
Sbjct: 66  RGALERATRILTDGEMAEAEAREQTVHPRGLIRMTAPMTFGIAHLAPVLPDFMASYPDID 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +   ++ +D+     D A+R+   +  SSL  R+L T+ +   A+P  L    +P   
Sbjct: 126 ITIGFSDQIVDLVGGGYDLAVRIAS-LSDSSLRARRLCTVRLLMVASPGLLARVGQPTHP 184

Query: 184 QELDK 188
           ++L++
Sbjct: 185 RDLEQ 189


>gi|170720657|ref|YP_001748345.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758660|gb|ACA71976.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 318

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 117/254 (46%), Gaps = 16/254 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    +  T  G+ 
Sbjct: 8   DQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDSLESAVGSRLFTRSTHAVRATPAGNA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL+ YP + + 
Sbjct: 68  FAERARRIIEELRLARAEAVSLSSAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVH 127

Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+   +    D  +R   P+  + L+   L  +   A A+P YL +   P  
Sbjct: 128 LRLIDSFVDLHGSHLGEVDLVLRA-GPLADTRLVATPLAYMVRVACASPAYLASRGIPAC 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVL 237
             EL  H+ + +  L P     F W   VD   G+ R+       +  N+  +++   + 
Sbjct: 187 PSELPGHDGLDWDGLAPP----FAWRFNVD---GQSRLYRPSRMRMAANNAETLLFGALA 239

Query: 238 GSGIALLPDYIVKD 251
           G G+A LP +++ D
Sbjct: 240 GLGVAHLPTWLISD 253


>gi|114569738|ref|YP_756418.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114340200|gb|ABI65480.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 301

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 138/294 (46%), Gaps = 17/294 (5%)

Query: 6   DKLRVFYVVAR---SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L+   +V +   SGSF+ A+  L +  ++ISRQ++ LE  +G KL  R  R L LT+ 
Sbjct: 2   DRLKAMSIVVQVVDSGSFSGASRALGIPLATISRQVTELEAHLGTKLLTRTTRKLALTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+        +   ++ T+         P G+L +   +  G+ L+   +++FL+ YP I
Sbjct: 62  GTAYLAAARRILDDIDETERAAAGEYHSPRGELIMTAPVAFGRLLVLPVIRDFLVAYPRI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+L ++++ +  ++ D A+R+  P+  SS++  K+ +I     A+P  L    +P S
Sbjct: 122 DVRLVLSDRNLHLMDEHIDMAVRI-GPLPDSSMVATKVGSIRTVVVASPALLAAHGKPQS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLG 238
            ++L     + F  L P       W  T   P G+   S     L V+S  + +     G
Sbjct: 181 PEDLSDLPGVHFDILSPAG----RW--TFTGPGGQTHDSAPRPRLTVSSADAAVWSACDG 234

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G+  +  Y   D   N +L  ++E+       V+  +        KL++F +F
Sbjct: 235 VGVTRVLSYQCADAVKNGSLHVLLEEFEPAPLPVHLVHAGRGVQPAKLRSFLDF 288


>gi|72383942|ref|YP_293296.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72123285|gb|AAZ65439.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 289

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 125/272 (45%), Gaps = 15/272 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +W  +R+F  +AR+G+   AA  +  +Q ++ R++  LE  VG  LF+R + G  LT+
Sbjct: 5   GLEWSDVRIFLAIARAGTLGGAARVIGQTQPTMGRRLRALEEAVGQALFHRTSDGFVLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS +      +  +       L       +G LR+ ++   G ++L      FL  +PD
Sbjct: 65  EGSAVLVYAERMEEEALGLSRTLAGQGNALTGSLRVTSSDWFGMHVLTPVFARFLRQHPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+ D++   ++   AD A R+  P +   +IQRKL  +HM+     + L   R+ +
Sbjct: 125 VSLELVTDSRQYSLARREADLAFRI-MPFEEPDVIQRKL--MHMN-----YALYGHRDLV 176

Query: 182 SIQELDKHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + +  D     LI+  D     + D  W   V R +   RI   + N+     + C  G 
Sbjct: 177 APRAGDGEGVALISM-DTAFGTLPDVEW---VGRMLPRARI-VYRSNNRGVQARMCAEGG 231

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271
           G A+LP  +     +L RI      P   V+F
Sbjct: 232 GFAVLPCALGDATRDLRRIDLGEAPPGRDVWF 263


>gi|160898776|ref|YP_001564358.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364360|gb|ABX35973.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 312

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 114/258 (44%), Gaps = 22/258 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   D++ VF  V    SF  AA QL L+ S++SR +  LE   G++L  R  R L+LTE
Sbjct: 5   AMPLDEMLVFARVVEHQSFAGAARQLGLTTSAVSRSVGRLEAHFGLRLLQRTTRSLSLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+++H+    +    +  Q    +   +P G L+I+    LG   L   L  F   +P+
Sbjct: 65  AGAEIHQACLRLVADAQAVQALAGQLRQQPRGLLKISAPAVLGDIWLSPLLPGFCARWPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +Q+Q+ + ++ +D+  +  D  +R+  P Q +  L+ R L TI     A P YL    + 
Sbjct: 125 VQVQVDMTDRMVDLVAEGLDLGLRISVPGQIAPGLVARPLKTIRYVLVATPGYLARHAQI 184

Query: 181 LSIQELDKHNLITFG-----------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229
               +L  H  I+ G            L P        L  V+ PI         + S L
Sbjct: 185 TEPGQLLAHPFISLGYGQFQNEVELRPLHPAAAPATRLL--VNTPI--------TIASSL 234

Query: 230 SIMQYCVLGSGIALLPDY 247
            I+     G GI ++ D+
Sbjct: 235 GIIHALQQGPGIGVVADF 252


>gi|34496756|ref|NP_900971.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34102611|gb|AAQ58976.1| probable transcriptional regulator, Lys R family [Chromobacterium
           violaceum ATCC 12472]
          Length = 305

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 125/264 (47%), Gaps = 14/264 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ +R F  + R+G    AA Q+  + ++++R I+ LE  +G  LF + A G +LT  
Sbjct: 2   FDWNDVRFFLALQRNGKLLGAARQMGTTHATVARHIAALEKVLGQPLFVQQADGYSLTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L      +   LE T  ++ +S  K     SG +R+     LG   L  ++   +  
Sbjct: 62  GRQL----LPLAESLENTASQMLDSGSKGHAEVSGVVRLGAPEGLGALFLARHMPALMAR 117

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP+++I L+   + + ++    D AI L +P Q++ ++ RKL    +  YA   YL    
Sbjct: 118 YPELEIDLVAVPRFVSVTSREVDIAIALERP-QANMVVTRKLTDYCLGLYATQAYLAAHP 176

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                ++L+ H ++ + D +    E          P   P    L+  S ++  +  +  
Sbjct: 177 PIREREDLNGHAILAYVDDLLFTRELMYHHGLCRHP-SMP----LRSTSVVAQREAALAD 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDV 262
            GIA+LP Y   D+P L +I+ ++
Sbjct: 232 GGIAVLPYYTTYDDPRLTQILPEL 255


>gi|227327282|ref|ZP_03831306.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 292

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 127/267 (47%), Gaps = 14/267 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F     +GSF+ AA  L++ Q ++SR ++ LE  +G++L  R  R L LT +G + +   
Sbjct: 4   FKRTVETGSFSAAARDLNMGQPNVSRYVAALEEHLGVRLLQRTTRQLVLTPEGERYYADV 63

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S +   +  ++  L + + +P+G LR+A    +    L   +  FL  YP + + L L +
Sbjct: 64  SRILDAVAESESSLSDET-EPTGLLRVACPTAMAHAFLMPQIPAFLSRYPGLSLDLQLSD 122

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP-HYLKNCREPLSIQELDKH 189
           + +D+  + A+ AIR+  P  S S ++ + + +    Y A   YL     P + ++L  H
Sbjct: 123 RFVDLVEEGAELAIRIGHP--SDSALRARRIGLFTRVYVASVDYLNRRGIPQTPEDLRDH 180

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + I +  L       +++  T     G       +VNS  ++ +  + G GIA  P ++ 
Sbjct: 181 DCILYSLL--NTGNTWHFRDTEINVSGR-----FRVNSPQAVQEAVIAGLGIASGPKWLY 233

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCY 273
           KD   +  L +++ D   P   + F Y
Sbjct: 234 KDGLQSGRLCQVLCDYEAPPVPIQFLY 260


>gi|167644762|ref|YP_001682425.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347192|gb|ABZ69927.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 297

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 125/287 (43%), Gaps = 9/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +   V  +G    A  +L  S ++++R ++ LE  +G +L  R  R L  TE G  
Sbjct: 5   DELALLVAVIDAGGLAAAGRKLRRSPAAMTRALAALEERMGARLIERTTRRLAPTEAGRD 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +    ET        +V+  G LRI      G   L   + +FL  +PD+Q  
Sbjct: 65  LAERARRLLADYETALRAPAPDAVR--GTLRITGPTVFGGRHLTPVVSDFLAQHPDVQAD 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+       A+R+  P+  SSL+ RKL  +     AAP YL     PL   +
Sbjct: 123 LTLHDRNLDLIEGELHVALRI-GPLADSSLLVRKLGEVRRLVVAAPDYLTRRGTPLEPGD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H++I    + P     F     V     EPR   L+VN+  + +   + G G+  + 
Sbjct: 182 LTDHDVILTTVVSPTPEWRFEAQGRVRAVRLEPR---LRVNNVEAALSAILAGRGVGRVL 238

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            Y V ++     LVR++ D   P+  V             ++AF +F
Sbjct: 239 SYQVAEDLAAGRLVRLLPDFEPPAIPVQLLTAGGRFMPPLVRAFLDF 285


>gi|323492186|ref|ZP_08097344.1| LyrR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323313499|gb|EGA66605.1| LyrR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 296

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 134/276 (48%), Gaps = 17/276 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF  V  + SFT AAEQL + ++ +S+ ++ LE E+  +L +R  R L+LTE G+ 
Sbjct: 5   DDMMVFTRVVETQSFTKAAEQLGIGKARVSQIVTKLEQELNTRLIHRTTRSLSLTETGAH 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +         + Q+ S +P+G +R++T + +   +      +FL  YP IQ++
Sbjct: 65  YYEKCQMIQELATEANNQAQKFSSEPNGMIRVSTPVGIAAYV--DLFSQFLAKYPQIQLE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  +   ++     D AIR    ++ SSL   ++        A+P YL+   E  S Q+
Sbjct: 123 IVESDSYSNLIESRCDIAIRASSDLEDSSLYATRIGQFEDILCASPQYLQRFEELQSAQD 182

Query: 186 L-----DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L       H+++  GD   K +E  +    V R   + R+     NS    +   +   G
Sbjct: 183 LLTLDWISHDIV-HGD---KVLELTSSQGEVVRLKKKARVRVRTTNSLRGFLLNHI---G 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +++P++ VKD   +  LVRI+ DV + +  +Y  Y
Sbjct: 236 FSVVPEFAVKDELASRELVRILPDVHSVTIPLYAVY 271


>gi|222109548|ref|YP_002551812.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221728992|gb|ACM31812.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 312

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 28/289 (9%)

Query: 6   DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+ F     VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R +TLT +
Sbjct: 2   DKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLLVRTTRRITLTHE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS        +   +   +  +    VK +G LR+      G+  +   +  F  L+P++
Sbjct: 62  GSAFLEDCQRLLSDVANAEASVSAGGVKATGHLRVTAPAGFGRRHVAPLVPRFHDLHPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P  
Sbjct: 122 TLSLNLSDRVVDLAGEGYDCAVRVGD-LPDSSLVSVRMADNRRLCVATPQYLQRRGTPTH 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-------------RPIGEPRISCLQVNSYL 229
             EL +H+ +T   L     +   W   V              +P G    S  QV    
Sbjct: 181 PGELAQHDCLT---LSSDASQTRGWAFRVPVAGGGGATEVVHFKPGGPLDCSDGQV---- 233

Query: 230 SIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            +  +C+ G GIA    + V+       LV ++E+   P   +Y  +P+
Sbjct: 234 -LHDWCLGGWGIAWRSTWEVESEIAAGRLVAVLEEFAAPPNGIYVVFPQ 281


>gi|70730747|ref|YP_260488.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345046|gb|AAY92652.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 299

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F   A +GS + AA  L L+ ++ S  +  LET +G +L  R  R + LTE+G +  
Sbjct: 7   LEIFVRTADAGSISAAARSLGLTAAAASIALKRLETRLGSRLLARSTRSMRLTEEGRRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE  ++ L++ S+  +G L+++   D G+N L   L EF   +P +++QL 
Sbjct: 67  ESVRLALATLEDGELALKQQSLGLAGVLQLSAPSDFGRNALLPWLDEFKAEHPQLRLQLR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQEL 186
           LD++  D+  D  D A+R   P + SSL+   ++  H   A A+P YL  C  P + + L
Sbjct: 127 LDDRHADLFRDAVDVALRFGVP-EDSSLVALPILPGHRRIACASPAYLARCGVPQNPEAL 185

Query: 187 DKHNLITF 194
             H+ + +
Sbjct: 186 AGHSALLY 193


>gi|330992730|ref|ZP_08316674.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp.
           SXCC-1]
 gi|329760208|gb|EGG76708.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp.
           SXCC-1]
          Length = 306

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 3/244 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F    + GS + A   L LS    SR +  LE  +G++L +R  R L+LTE G    
Sbjct: 8   MQLFSRAMQMGSISAAGRALGLSPGMASRHLDALERRLGVRLCHRSTRRLSLTEAGQHYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   +  +LE  +  +    ++ SG LR    +  G   +   +  F   +P + + L 
Sbjct: 68  ELCQRLLPELEEVEARIASQRIEASGVLRFNVPLSFGVRYIAPLIPAFHAQHPAVTVDLG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D++ +  D  IR+ + ++ S L+ R+L    +   AAP YL     P S  +L 
Sbjct: 128 LNDRIVDLTGEGWDLTIRIGR-LRDSRLVTRRLAACELLVCAAPDYLTGRGRPRSWADLS 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ + F   +    +   W     R    P    L  N+  +++     G GI   PD+
Sbjct: 187 EHDCLGFS--LSGIAKPGEWFYGRSRERRVPVRGPLCANNGDALVACASAGLGIIYEPDF 244

Query: 248 IVKD 251
           IV D
Sbjct: 245 IVAD 248


>gi|200390770|ref|ZP_03217381.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603215|gb|EDZ01761.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 321

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 10/259 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMITYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I +   I R+L T      A+P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDI-NELYIARQLATNRRILCASPEYLERHGKPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243
           L +H+ +    +I +    F NW+ T  +     R++     NS   ++ + + G GI L
Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255

Query: 244 LPDYIVK---DNPNLVRIM 259
             ++ V    +   LVR++
Sbjct: 256 RSEWDVAQYIERGELVRVL 274


>gi|150377862|ref|YP_001314457.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032409|gb|ABR64524.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 298

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 93/169 (55%), Gaps = 2/169 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +GSF+ AA  L+ + S++S+ ++ LE ++G +LF+R  R LTLT+ G    
Sbjct: 11  LMAFVRTVEAGSFSAAARDLNTTPSAVSKSVARLEKKIGTRLFFRTTRALTLTQDGQLFF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  + +  +L+++   ++ S   PSG+LRI+   +L   LL G  + F   YPD+ + + 
Sbjct: 71  KRVAPLLRELDSSDDAIR-SQAAPSGRLRISMPGELAPLLLPGLFERFATAYPDLHLDIG 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           L ++ +D+  +  D  +R+  P Q   LI R L  + M   A+  +LK+
Sbjct: 130 LTDRFVDLIREDYDVVLRVGDPTQ-GDLIVRHLADLPMVVVASSPFLKS 177


>gi|86356831|ref|YP_468723.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280933|gb|ABC89996.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 299

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 134/298 (44%), Gaps = 15/298 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G F+ AA +L++S + +   +  LE  +G++L  R  R ++LTE G   +
Sbjct: 7   LEVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEERLGVRLLNRTTRKVSLTETGKYYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +S++  +L+         S  P G L++ T+  + + LL     E++ LYP I +   
Sbjct: 67  ERSSQILAELDEADRTASALSTTPRGTLKVYTSGAIVRFLLP-VFSEYMELYPSISVDFS 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  + +D+  D  D  IR   P   SSLI RKL         +P Y+ +   P    E+ 
Sbjct: 126 VGERMVDMIEDGYDLVIRTLPP--DSSLIARKLTPWRHMLVCSPAYVDSHPIPKKPSEIA 183

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
            HN + +    P   E   W     D      ++S   V++   ++++  L G G+ L P
Sbjct: 184 DHNCLQYA-YYPYGDE---WRFEDGDGRQESVKVSGNVVSNNAEMLRFLTLNGRGLFLAP 239

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
            ++V D+     L+RIM D     FT+   Y        K++ F + +   F + R W
Sbjct: 240 SFVVFDDIAEGRLIRIMPDYKPVEFTINAVYSNRSHLPTKVRLFIDLLAERFAEHRKW 297


>gi|221197713|ref|ZP_03570759.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221204729|ref|ZP_03577746.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221214924|ref|ZP_03587892.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221165151|gb|EED97629.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221175586|gb|EEE08016.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181645|gb|EEE14046.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 313

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD+ ++L
Sbjct: 66  LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAVARYRERYPDVHVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D AI + + +  S L+ ++L   +    A+  Y+     P    +L
Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASTAYVAAHGAPQRPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
            +H  +  G + P    D  W  T+  P G+  +       +VN   ++      G GI 
Sbjct: 186 AQH--VCLGMVAPGFHYD-EW--TLTGPDGDESVPVTAPPFRVNVAEALAVAVREGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LP Y       +  +VR+M +  +    +Y  Y           A R ++  K R W
Sbjct: 241 GLPLYSAIGGLRSGQIVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287


>gi|170719962|ref|YP_001747650.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757965|gb|ACA71281.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 298

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 122/248 (49%), Gaps = 7/248 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L+VF  V   GS + AAEQL  + S++SR +S LE ++G  L  R  R + LTE+G  
Sbjct: 6   EELQVFVAVIDCGSISAAAEQLGQTPSAVSRTLSRLEAKLGTTLVNRTTRRMDLTEEGRF 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               +  V  +++  +  L  +   PSG+LRI        + +   + EF   YPDI+++
Sbjct: 66  FLERSRLVLEQMDDMEERLSMNRQTPSGRLRINAAAPFMLHAILPWIGEFRSQYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D+  ID+     D AIR+ + +  SSL  R L    +   A+P YL+    P  +++
Sbjct: 126 LNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARSLGCSPVQVLASPAYLERHGTPQHVED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L+ H L+ F    P+ +  +    A  DR    P    L  +S  ++ Q  + G GI  L
Sbjct: 185 LNHHCLLGFSQ--PESLNQWPLRHAQGDRWAIRP---ALIASSGETLRQLALAGEGIVSL 239

Query: 245 PDYIVKDN 252
             ++  ++
Sbjct: 240 SHFMTHED 247


>gi|152994932|ref|YP_001339767.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835856|gb|ABR69832.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 300

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 33/313 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L VF  VA   +F  AA++L +++S++S+ I  LE ++GI LF R  R + LT
Sbjct: 3   MKIDLNILPVFIAVAEEHNFRVAADRLGITRSAVSQMIRKLEDQLGIALFTRTTRSVKLT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQE--SSVKPSGKLRIATTIDLGQNLLQGN-LKEFLL 117
           E G  L+   S+V  +LE     L+   S   P G LRIA+T  + +  L G  + EF  
Sbjct: 63  EAGEHLY---SQVRPQLENVNSSLENITSHKSPRGLLRIAST-SIAEPFLSGKFIVEFSK 118

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSL------IQRKLVTIHMHAYAAP 171
            YPDI++ + + + + DI     D  +RL   ++   +      +QR +      A A+P
Sbjct: 119 KYPDIELDITVSDDEFDIVKAGFDAGVRLGDSLEQDMIALPICGLQRDM------AVASP 172

Query: 172 HYLKNCREPLSIQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISC-LQVNSYL 229
            Y+     P   ++L  H  I +    PK     + W  + +    E  +   +  N + 
Sbjct: 173 DYIAQQGIPKHPKDLLNHRCIGWR---PKLNNRPYYWEFSENEKDFEVSVEPQVTTNDFR 229

Query: 230 SIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKA 285
            +++  + G GI    +   +       LV ++E+ + P+F+  YF YP     + KL+A
Sbjct: 230 LMLRVALAGGGITFATEETFRPFIKTGKLVPLLEEFL-PTFSGFYFFYPNRENMSPKLRA 288

Query: 286 FRNFIFLKARDWK 298
             +F+    + WK
Sbjct: 289 MVDFV----KSWK 297


>gi|16263562|ref|NP_436355.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|14524265|gb|AAK65767.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 297

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 20/295 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L+ F  VA +G  + AA +L +S+S +SR++  +E E+G++L  R  RG  LTE 
Sbjct: 1   MDIEDLQTFVAVADAGGVSAAARRLGISKSIVSRRLLRVEAELGVQLLARTTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118
           G     +T   +    + +I+  + ++ P+    G+LR+A  +  G       L +    
Sbjct: 61  G-----ITFRDHAARASAEIDTAKETILPTGELRGRLRVAMPLTFGPTHFAPVLADMARQ 115

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P + I     ++ +D+  +  DCAIR    +Q S+LI +++  IH    A+P Y+K   
Sbjct: 116 HPQLHIHTSYSDRFVDLIAEGFDCAIRGAY-LQDSNLIAKRVGPIHGKLVASPDYIKAHG 174

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++ EL  H  +  G    + M D + + TV +P G       + +S  ++      G
Sbjct: 175 SPGTLDELVTHQALMQGTEAWQFM-DGDKIVTV-QPQGR-----FKADSATALAAAAAAG 227

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA LPD I      +  LV IM     P    Y   P     T K++A    +
Sbjct: 228 LGIAWLPDCITYGYVASGALVPIMTRYPVPPGAAYVVRPPGQHPTRKVRALTEML 282


>gi|330965841|gb|EGH66101.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 298

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 133/287 (46%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F +V  + SFT A ++L +S S + + I  LE  +G +LF+R+ R + LT +GS     
Sbjct: 9   LFVLVTETRSFTLAGKRLGISSSGVGKSIGRLEESLGARLFHRNTRSIALTLEGSIFLDR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +L+  Q+EL  +   P G+LRI+  +  G  L+   + +F+  YPDI++ +   
Sbjct: 69  CRRILSELDAAQLELSNARDLPKGRLRISVPLVFG--LVMPVVIQFMRTYPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R  +P   S L+ +++ +  +    +P Y    R  L  Q  D  
Sbjct: 127 DRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCVVGSPDYF--ARHGLPEQPADLV 183

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
           N        P   +  +W   + R  G       Q    N+   +++    G GI  LPD
Sbjct: 184 NHACLQHKFPSTGKFEHW--PLRREAGSEDFELPQTMVCNTTEVLVEVARAGLGITCLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++        LV I+ D    + +    +P +   + +L+ F +F+
Sbjct: 242 FMLASAIRKGELVPILADYTLHTGSFRLFWPSSKHLSVRLRVFIDFM 288


>gi|323499578|ref|ZP_08104547.1| hypothetical protein VISI1226_08774 [Vibrio sinaloensis DSM 21326]
 gi|323315318|gb|EGA68360.1| hypothetical protein VISI1226_08774 [Vibrio sinaloensis DSM 21326]
          Length = 316

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 127/264 (48%), Gaps = 12/264 (4%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSFT  +EQ ++ +S IS+QI  LE E+G++L  R  R L+LT  G+++      +   L
Sbjct: 17  GSFTKVSEQKNVDRSVISKQIRRLEEELGVRLLNRTTRSLSLTAAGNEMVNQAKSLRSLL 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
             T    Q    +P G LRI ++   G+  +Q  +  F   YPD++ +L L+++ +D+  
Sbjct: 77  SDTHRLAQNYHEEPRGVLRITSSTMFGRQYVQDAISVFQKQYPDVEFELRLEDRMVDMVQ 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           +  D   R+ +P ++SSLI RK+    +   AAP +L+   E  S+++L+      +   
Sbjct: 137 EGFDIGFRIGRP-KNSSLITRKIARSRLLIVAAPAFLEKHGEVNSLEKLESLPATIYA-- 193

Query: 198 IPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALLPDYIVKD--- 251
            P  +  F+     D    +         +VN    + +    G+ +A++   +V+D   
Sbjct: 194 APGLL--FDKFGYQDEQGKQQHFQLNVAYKVNDVEMLARSAAGGNTLAVVTAQMVQDEIK 251

Query: 252 NPNLVRIMEDVITPSF-TVYFCYP 274
              LV IM  +    F T Y  YP
Sbjct: 252 QGKLVPIMTHLNIDDFGTFYAVYP 275


>gi|167553533|ref|ZP_02347282.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322032|gb|EDZ09871.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 321

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 10/259 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMITYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I +   I R+L T      A+P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDI-NELYIARQLATNRRILCASPEYLERHGKPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243
           L +H+ +    +I +    F NW+ T  +     R++     NS   ++ + + G GI L
Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255

Query: 244 LPDYIVK---DNPNLVRIM 259
             ++ V    +   LVR++
Sbjct: 256 RSEWDVAQYIERGELVRVL 274


>gi|146341482|ref|YP_001206530.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146194288|emb|CAL78310.1| putative transcriptional regulator, LysR family [Bradyrhizobium sp.
           ORS278]
          Length = 301

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 129/283 (45%), Gaps = 8/283 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  LR F  V R GS + AA    L+Q ++ R I  LE  +G+ LF R   GL  TE  
Sbjct: 6   DWSLLRSFLAVVRRGSLSAAARATGLTQPTVGRHIDELEAGLGVALFTRSQAGLLPTESA 65

Query: 64  SKL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           + L  H    E          +    + +P G +RI+ +  +G  +L   L      +P+
Sbjct: 66  TALLPHAEAMEAAFAALVRTAKTGGDAQQPRGVVRISASEIVGTFVLPPILAGIRHRFPE 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L+L+N+  D+    AD A+R+ +P Q   L+ R++ ++ +  YA   Y+     P 
Sbjct: 126 IVIELVLNNRTDDLLRRDADIAVRMIRPKQ-DGLVARRIGSVPLGLYAHRDYVARFGLPD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I++L  H++I F     +       +A+   PI     S  + +S ++ +     G GI
Sbjct: 185 TIEQLGAHHIIGF----DRDDHSARSVASSQLPISRELFS-YRTDSDVAQVTAIEAGLGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
             +   + + NP L+ ++   I      +    E  K++  ++
Sbjct: 240 GGMQKAMARRNPALLPVLAGQIAFELDCWLAVHEDQKDSPPIR 282


>gi|114800127|ref|YP_760066.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114740301|gb|ABI78426.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 302

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 124/281 (44%), Gaps = 6/281 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +R F  V   GS + AA  L L+Q ++SR I  LE  +G  LF R  RGL  T++  
Sbjct: 8   WDHIRSFLAVLEEGSLSRAARVLSLTQPTLSRHIDQLEATLGGPLFTRSPRGLIPTDKAR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +      +             ++ + +G +RI+ +  +G  LL   L      YP +  
Sbjct: 68  MIEPYARTIAASAAAMARAASGAAGEMTGAVRISASEVVGIELLPEMLAPLREAYPGLTF 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++  N+  D+    AD A+R+ +P Q  +L+ RK+  + +  +A   YL+    P S++
Sbjct: 128 EILPTNQSSDLLRRDADIAVRMVRP-QQGALLARKVGDVMLGLFARRDYLEKYGTPRSMK 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++  H LI F               T+DR          + +S L+       G+GI + 
Sbjct: 187 DVAGHALIGFDHETISVQALRGMGLTLDRA-----SFAWRTDSDLAQTNLIRAGAGIGVC 241

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
              + + +  LV+++ +  T     +    E LK   ++KA
Sbjct: 242 QAGLARRHGALVQVLPEDFTFPMETWVTMHEELKGVTRMKA 282


>gi|323525583|ref|YP_004227736.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382585|gb|ADX54676.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 298

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 23/297 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++RVF  VA   SFT A++ L + +++++  +  +E  +G +L  R  R + LT  G 
Sbjct: 4   FEEMRVFVRVAERQSFTRASDDLQIPRATVTNLVKRMEERLGARLLERTTRTVRLTPDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  + E   S++ P G LR+     L ++ +   L  FL  YP I++
Sbjct: 64  AYYGRCVRLIADLE--EAEGSFSNLAPKGLLRVNLQGTLARHFIVPALPAFLARYPGIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL+   EP    
Sbjct: 122 TIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLEQYGEPADPH 180

Query: 185 ELDKHNLITF-----GDLIPK--CMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCV 236
            L +H  + +     G  +P    ME  N       P+  P  +S   V  Y       V
Sbjct: 181 ALARHRAVNYVSSATGKPVPLEFSMEGRNT------PMLLPGVVSVTGVELYTG---SAV 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  +P Y V+D   +  L  I+ D   P   V   YP+  + + +++ F  ++
Sbjct: 232 AGLGIVQVPRYRVRDELASGRLKIILADFPPPPLPVSVLYPQNRQLSSRVRVFAQWL 288


>gi|239994284|ref|ZP_04714808.1| putative transcriptional regulator, LysR family protein
           [Alteromonas macleodii ATCC 27126]
          Length = 298

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 144/301 (47%), Gaps = 22/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S   + L  F  V  +GSF+ AA  L+   + +SR ++ LE  + + L  R  R L LT
Sbjct: 3   VSSKTEDLEAFLTVVDTGSFSSAANLLNQQVAKVSRAVTRLEDGLDVTLLNRTTRRLELT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   +  + LE  +  L+     PSGKLR+        + L   + EF   +P
Sbjct: 63  EEGELFLQYARDGLNILEKGEEALRLLKRAPSGKLRVDAASPFVFHQLAPLVGEFREAFP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + +   +  ID+     D AIR+   +  S+L  R+L    +H  A+P YL+  + P
Sbjct: 123 DITLDITSHDSIIDLLEHKTDIAIRI-GDLSDSNLHARRLGKSKLHIVASPQYLE--KYP 179

Query: 181 LS-----IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           +S     I  L+KH LI F D  P   +   W    D  +       L+ +S  +I Q C
Sbjct: 180 ISEGEDGISTLNKHKLIGFSD-SPSLNK---WPLKQDINLQ----YSLRASSGETIRQLC 231

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIM-EDVITPSF--TVYFCYPEALKNTGKLKAFRNF 289
           + G GIALL  ++V  +    +LV +  +D+++P+   +V   Y +    + ++ AF +F
Sbjct: 232 LAGQGIALLSHFMVHKDISAGSLVALFRDDIVSPNRRESVQAVYYKNSAVSSRISAFLDF 291

Query: 290 I 290
           I
Sbjct: 292 I 292


>gi|209544929|ref|YP_002277158.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532606|gb|ACI52543.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 305

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VAR  SFT AA +L  S S++S  I  LE  +GI+L  R++R ++++E G++
Sbjct: 8   DDLMAFACVARVRSFTRAAAELGTSTSNLSHTIKRLEGRLGIRLLQRNSRSVSVSEAGNE 67

Query: 66  LHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L R       ++E    +++L+ SS+  SG +R+  T    + +++  L  F+  +PD  
Sbjct: 68  LLRSIGPELERIENAVGRLQLKRSSI--SGAVRLTATRQAYEMVIRPVLPAFVAAHPDAT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++D    D+  D  D  IRL + I+   +  +    + M   AAP YL     P   
Sbjct: 126 VEVLIDYAFRDVIADQFDAGIRLGEKIEQDMIALKVGPDLRMAVVAAPSYLARHGTPRHP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I +  +    +  + W    +    E R+   L  N    ++   + G GIA
Sbjct: 186 RDLVNHRCINYRMVASGAI--YAWEFEENGLAFEVRVPGPLTFNEPQLMLDAALSGLGIA 243

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            L +  V     +  LV ++ +   P    Y  YP  L+      AF
Sbjct: 244 YLLENDVAPHVGSGGLVNLLAEWTAPFPGFYLYYPSRLQMRPVFGAF 290


>gi|146310744|ref|YP_001175818.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145317620|gb|ABP59767.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 305

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 138/295 (46%), Gaps = 18/295 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L ++  V  +GSFT AA+ L L+++ +S  I  LE E+G+ L  R  R +  T+ G + 
Sbjct: 6   RLGMYVAVVDAGSFTGAAQTLGLTKAVVSFNIKQLEQELGVSLLTRSTRHVATTDAGERF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++    E    E++      SG LRI TT + G  ++   L  F   YP ++IQ 
Sbjct: 66  YHRCQQLLQDAERVLDEVRSDHGGLSGLLRITTTPEYGARVVVPALAAFAAQYPHLRIQH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL--SIQ 184
           +  +K  ++     D AIRL + +  S+   R +    ++  A+P YL +  E    +++
Sbjct: 126 VSSSKSDNLISGRFDVAIRLGQ-LADSTHHARLIDQFDIYPVASPAYLDSLSEKGINTLE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSIMQYCVLG 238
           +L     I       +     NW   V  P G+  +        +  +S  +++ + +  
Sbjct: 185 QLASAKWIAHS----RLSTPLNW--QVLTPDGDHVMFAAHQPVTIMADSAATLLAFSLNH 238

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +G+ALLP ++ +D+     L R++ D + P   +Y  YP       K++ F +F+
Sbjct: 239 AGVALLPSWLAQDSLAKGTLRRVLPDHVFPRQGIYALYPNTRHVPEKVRTFIDFL 293


>gi|50084764|ref|YP_046274.1| LysR family transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49530740|emb|CAG68452.1| putative transcriptional regulator (LysR family) [Acinetobacter sp.
           ADP1]
          Length = 294

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 137/303 (45%), Gaps = 36/303 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L+ F V+AR  + T+ A  + +  S++SR+I  LE  +G  LF R + G  LT
Sbjct: 1   MKVDWDHLQFFLVLARVKTLTNTARIIGVEHSTVSRRIQALELALGSTLFKRESTGYELT 60

Query: 61  EQGSKLHRVTSEVYH--KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            +G  L      + H  ++E   +++++S     G +RI T    G   L   L E    
Sbjct: 61  LEGLAL------IPHVEQMEQAFLQIEKSGSPLQGHVRIGTPEGFGTAFLAQLLAELSKQ 114

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP + I LI   K I +S   AD  I + +P +S   I  +L    +  Y + +YL+N  
Sbjct: 115 YPLLTIDLIPVPKMIKLSHREADIVISIDRP-KSGPYIITRLTDYCLKIYGSKNYLENTP 173

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVN------S 227
           +   + +L  H  + +                +D  I  P + C     LQ+N      S
Sbjct: 174 DIKKLDDLMHHRFVNY----------------IDDLIYSPELYCLERLPLQLNANFRSSS 217

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            L+       G+G+A+LP ++ ++   L +++E+ +    T +      L++  ++K   
Sbjct: 218 ILAQQMAVSAGAGLAILPKFLAENRSELQQVLENEVRFIHTFWMLTLVDLQHEPRIKLVW 277

Query: 288 NFI 290
           +F+
Sbjct: 278 DFL 280


>gi|310639228|ref|YP_003943987.1| LysR family transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
 gi|308752804|gb|ADO43948.1| LysR family transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
          Length = 295

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 16/292 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L  F  +A  G F  AA +L+L+ S++S  +  LE ++G++L  R  R + LTE G
Sbjct: 5   DFGELAAFVAIAEEGGFRRAAARLNLTPSTLSHSLRSLEEKLGVRLVSRTTRTVALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R     +  +ET    + +    P+G +R++    +   +L    + F   YPD+ 
Sbjct: 65  HALLRQIGPAFASIETAVETINDFRDHPAGTIRVSVPRTVAVRVLTPKFRAFTDRYPDVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  +N  +DI     D  IRL + ++   +  R    +     A+P Y      P + 
Sbjct: 125 LEVAAENGFVDIVKQGFDAGIRLGESLERDMIAVRVTPDLDTAVVASPDYFSRFPPPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVL- 237
           ++L +H  I +       +  + W    D      R   + VN  L      +M    L 
Sbjct: 185 RDLHRHRCIGWRQTGSGAL--YRWEFEKDG-----RAFNVAVNGPLVLDDPDLMVMAALD 237

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G G+A   +  + +   +  LVR+++D   P    +  YP   +    L+A 
Sbjct: 238 GVGLAYSTEQHIGEHLASGRLVRVLDDWCPPYPGFFLYYPSRRQAPAALRAL 289


>gi|45367|emb|CAA78445.1| ORF3 [Pseudomonas aeruginosa PAO1]
 gi|444426|prf||1907161A opdE upstream ORF 3
          Length = 249

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 111/242 (45%), Gaps = 13/242 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VAR G+FT AA QL ++QS++S+ ISGLE  + I+L  R  R ++ T  G +L    
Sbjct: 12  FVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAGERLLNAI 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              + ++E    EL     KPSG +RI     + + LL   L   LL YPDI+++  ++ 
Sbjct: 72  GNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIKVEFDINY 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              DI  D  D  +RL   I    +       + M   AAP Y     +P S ++L  HN
Sbjct: 132 GFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRSPRDLVDHN 191

Query: 191 LITF-----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            I       G L       + W     DR +       L  N+  +I+   + G GIA L
Sbjct: 192 CINMRMQSGGGL-------YAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIAWL 244

Query: 245 PD 246
           P+
Sbjct: 245 PE 246


>gi|107026116|ref|YP_623627.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|105895490|gb|ABF78654.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
          Length = 303

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 133/297 (44%), Gaps = 19/297 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AAEQL L + ++S  +  L   + I+L  R  R + LT +G+  +
Sbjct: 7   MRTFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLGKHLKIRLLQRTTRRVALTAEGATYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +   +++   P G +R+        N +   L +F   YPD+++ + 
Sbjct: 67  ERCVRLLADLDDVETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPDLRVVIS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P S  EL 
Sbjct: 127 TTDRFVDLVADGIDCAVRV-GVLSDTSLVARRVGEMAQINCASPAYLARHGTPRSPDELP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  +  G    +   + +W    D   GE       S + VNS  + +  C+ G G+  
Sbjct: 186 DH--VAVGYFSSRTGRELDW-EYADMDSGELHAVKMHSVVSVNSSQAYLACCLAGLGLIQ 242

Query: 244 LP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            P D +     + +LV ++ +       V   +P     TG+  A R  IF+   DW
Sbjct: 243 APRDGLAPLLADGSLVEVLPEWNAAPLPVSVVFP-----TGRHLAPRVRIFV---DW 291


>gi|134296386|ref|YP_001120121.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139543|gb|ABO55286.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 326

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 23/291 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE G   ++  
Sbjct: 14  FSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTEAGELFYQHC 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  + +     +Q+    P G +R++  + L Q +L   L EFL  YP++++ + + N
Sbjct: 74  QAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLHRYPEVKVHIRVTN 133

Query: 131 KDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + ID+  D  D A+R+R +P Q+++++ R L         AP  L     PL   +L + 
Sbjct: 134 RVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQHAPPLVPADLARF 193

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVLGSGIA 242
             +    +      D   + T+  P G       +PR   L     ++I +  + G GIA
Sbjct: 194 ETLDTPSV------DGRHVFTLIAPDGTRHLHEHDPR---LVTADLMTIREAVLDGLGIA 244

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+ +  +      L  +M     P   +Y  +   +   G   A R F+
Sbjct: 245 ALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRAFV 292


>gi|170747519|ref|YP_001753779.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654041|gb|ACB23096.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 316

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 132/299 (44%), Gaps = 18/299 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++R F  VA  GS +  A +  + QS+I+R +  LE  +G+ L  R  R L LT +G  
Sbjct: 9   ERMRSFVRVAERGSLSAVAREFGVGQSTITRHLRELEDALGVALISRTTRRLALTAEGLA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  +  + H +E    E ++    P+G +R++ T  LG   +   +  F   YPDI + 
Sbjct: 69  YYENSLRILHLVEQAGAEARDRRHAPAGTVRLSCTAALGVLHVGAIVFAFQDRYPDISVD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D AIRL  P+  S+L  R +        AAP YL     PL+ ++
Sbjct: 129 LSLTDERVDLVREGMDLAIRL-GPLADSALRLRAVGRSERRLVAAPAYLAARGRPLTPED 187

Query: 186 LDKH------NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  H      N+   G L+ +  E          P G      L+V+  L+     + G 
Sbjct: 188 LVGHEGIRMTNVAGSGTLVLEGPEAGRRAV----PFG----GRLRVDHGLAARAAVLAGR 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA    ++V D   +  L  ++ D   PS  +            +++   +F+  + R
Sbjct: 240 GIAPAHRWLVADCLADGRLEAVLPDYALPSVPLSLLIVPERAAIARVRLLADFLAAELR 298


>gi|241518470|ref|YP_002979098.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862883|gb|ACS60547.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 296

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 130/288 (45%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F  V  +G FT AA +   SQ ++S+ I  LE  +G+ LF R  R +TLT+QG + 
Sbjct: 6   ELKAFLAVVETGGFTAAARRTGTSQPAVSKAIGALENRLGVALFNRSTRNVTLTDQGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++    E+  S+V  SG +RIA    LG+  +   + + L  +P +++ L
Sbjct: 66  FDRMKPLLEEIDNANREVIGSAVDMSGSIRIAVPTTLGRLHILPIIPDLLSRFPKLEVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +   D+  D  D  IR+   ++    + R++    +    +  Y +    P    +L
Sbjct: 126 VLSDLMRDMVEDRVDLVIRV-GSVEEPDAVVRRVAKTPLVCVGSRQYFEKHGIPTKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             HN + +G       E  NW     +          L  NS  +I    + G GI +  
Sbjct: 185 ADHNCLVYGGF----KESANWPFVGQEGHFSVAVRGNLTSNSIETIRAGVLAGVGIGMFT 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + +   +P++V I+ + +  +  + F +P+    + +++   +F+
Sbjct: 241 KASLVEELSHPDVVTILGEYVQGTRDISFVWPKRRLVSARVRHVTDFL 288


>gi|326795613|ref|YP_004313433.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326546377|gb|ADZ91597.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 306

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 133/275 (48%), Gaps = 19/275 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA+  SFT AA++L +S+S+IS+QI  LE  +G +L  R+ RG+ LT  G  L 
Sbjct: 10  LLIFVEVAKKRSFTAAAKKLGMSKSAISQQIKRLEESIGHQLLIRNTRGVVLTSAGETLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +  +L  T  EL     +PSG  +++      + ++   LK+  L +P +  +++
Sbjct: 70  ARSELLNEQLSLTLTELNSEKEQPSGHFKVSVPPFFEKGIVIPALKQLCLEFPKLTPEVV 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  K  D+     D AI     I++       +  +     A+P YLK   +  SI+ L 
Sbjct: 130 VTEKWQDLIEHNLDAAI-FGGDIKNCDYRALSVGVVSEVFCASPRYLKQYGDVTSIENLS 188

Query: 188 KHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGI 241
           +H  I      + I     D++          E RI+     +VN+  S ++  +   G+
Sbjct: 189 EHKYIATAWHREKIQIFANDYS---------NEQRIALPYSAKVNTLTSALEVVLNDMGV 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           ALLP+++ +   +  NLVR++ D+   S+  YF +
Sbjct: 240 ALLPEFLAQTHLNQENLVRVLPDLRGRSWHFYFLH 274


>gi|307299931|ref|ZP_07579716.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306904820|gb|EFN35403.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 298

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 133/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +RVF  VA   SFT AAE L L +S+I+  +  LE  +G++L  R  R +  T  G 
Sbjct: 4   FDAMRVFARVAERRSFTLAAEDLGLPRSTITDAVKQLEGRLGVRLLQRTTRVVRTTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +     S   PSG LRI       ++ L   L+ FL  YPDI++
Sbjct: 64  AYYHRCVRLIADLEDAEAVF--SGASPSGLLRIDVHGTQARHFLLPGLQVFLDRYPDIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +DI  +  DC +R    +  S LI RKL  +    +A+P YL     P   +
Sbjct: 122 HISETHQPVDIVREGYDCIVRAGH-LADSPLIGRKLAELKRGTFASPEYLARFGTPHVPE 180

Query: 185 EL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L D H ++         +  F + +A   R +  P +  +      ++   C  G G+ 
Sbjct: 181 DLFDGHQMVGLLSSDTPSVAPFAFVVAGKARELTLPTVVTV-TGPETNVASACA-GLGLI 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +P Y V     +  LV ++ D       V+  Y   L+ + +L+ F ++I  + R
Sbjct: 239 QVPRYRVASELASGALVEVLTDFPPSPLPVHVLYSHTLQLSPRLRVFIDWITERYR 294


>gi|262276030|ref|ZP_06053839.1| D-serine dehydratase transcriptional activator [Grimontia hollisae
           CIP 101886]
 gi|262219838|gb|EEY71154.1| D-serine dehydratase transcriptional activator [Grimontia hollisae
           CIP 101886]
          Length = 301

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 129/294 (43%), Gaps = 22/294 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA + SFT AAE+LHL+QS++S +I  LE  + + LF R  R L+LT +G +L 
Sbjct: 14  LHCFSVVAETMSFTRAAEELHLTQSAVSHRIKKLEQRLDVTLFVRRPRQLSLTNEGEQLK 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V SE +  +    +EL  +  +P G   I+      Q  L   L  F   +PD+ + L 
Sbjct: 74  LVVSEQFSAISLKLLELNRA--RPVGDFIISAPPTFSQKWLVPRLSLFAESFPDLTLHLR 131

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             N  ID   +  DCAI         + S  L+   +V +   +YA  H L N  E L+ 
Sbjct: 132 TRNDLIDFKAEAFDCAIYFGHGRYNGLISHHLMDDAIVPVCSPSYAEHHALYNAPEKLAQ 191

Query: 184 QELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L         D  P      +  WL   +    E + +    +     +     G G+
Sbjct: 192 CQL-------LHDAAPWASASLSDEWLYWANANGLELKGTNHSFDRADLALDAATHGMGV 244

Query: 242 AL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+     + +Y+   N  LV  ++  +   ++ Y  Y E  +   K+ AF+ ++
Sbjct: 245 AIGRMAYIQEYL--HNGKLVAPVDKPVKSPYSFYLVYREEHQGNAKILAFKEWL 296


>gi|172064063|ref|YP_001811714.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996580|gb|ACB67498.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 299

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 120/270 (44%), Gaps = 7/270 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT AA +L +SQS++S  I  LET +G++L  R  R +  TE G +L 
Sbjct: 9   LLAFIAVARERSFTRAAARLGVSQSALSHTIRALETRLGVRLLTRTTRSVAPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +  + ++E     L E   KP+G +RI  T  + + LL   L   L  Y D++++ +
Sbjct: 69  QNLAPRFDEIEDELSALAELRDKPAGTVRINATDYVIRTLLWPRLSPILRDYRDLKVEFV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    DI     D  +RL   +    +  R    + M    AP Y      P + Q+L 
Sbjct: 129 TDYGLSDIVAQRFDIGVRLGDQVAKDMIAVRISPDLKMAIVGAPAYFAEREPPATPQDLV 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ I     +P     + W LA  D  +       +  N    ++   + G G+A +P 
Sbjct: 189 AHDCINL--RLPTHGALYAWELARGDDTLQVRVDGQVTFNGTYEMLDAALAGYGLAYVPA 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +     +   LV +++D   P+F  +  Y
Sbjct: 247 ELAAPHVEAGRLVSVLDD-WCPTFPGHHLY 275


>gi|163859097|ref|YP_001633395.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262825|emb|CAP45128.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 307

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 134/287 (46%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++ + G+ + AA +L L+  ++S +++ LE  +G++L  R  R + +T++G    
Sbjct: 7   LAFFSLLVKHGNLSAAARELGLTPPAVSTRLANLERRLGVRLLNRTTRRVNVTQEGELYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +  +  +  +P G LR+  T   G+  +   + +F   +P++++Q+ 
Sbjct: 67  AEGGRILADLEALERSVASARAQPRGLLRLNATFGFGRAHIVPAVSDFTRQFPEVEVQMQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D A+R  + I  + L  RK+ +      A+P YL+   EP +  EL 
Sbjct: 127 LTDRPVNLLDEGFDVAVRFGE-IPDARLTARKIASNRRLLCASPQYLRAHGEPRTPGELQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I   +     +    W     + +   ++   L  N   S +++ + G GI +  +
Sbjct: 186 RHRCIVVRE---NDVAYGTWHLRAGQRVETVKVRGPLSSNDGQSALEWALDGHGIVMRSE 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +       +  L  ++ D  TP   ++  YPE L    K  AF +F+
Sbjct: 243 WETAAYLRSGRLRHVLPDWSTPPADIHALYPERLNLPAKTVAFVDFL 289


>gi|119504936|ref|ZP_01627013.1| putative transcriptional regulatory protein (LysR family) [marine
           gamma proteobacterium HTCC2080]
 gi|119459222|gb|EAW40320.1| putative transcriptional regulatory protein (LysR family) [marine
           gamma proteobacterium HTCC2080]
          Length = 300

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 28/299 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V  +GSFT AA    +  SS+SR+I+ LE  +G  L  R  R + +TE G + +
Sbjct: 7   LRYFSKVVETGSFTKAAATFSVPASSLSRRIADLEKSLGANLLKRTTRVVQVTEIGQQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V   LE +   ++     P G LRI+T +  G+ +L   L EF  LYP+I + L 
Sbjct: 67  QQVQDVLAHLERSDESVRSYQASPKGFLRISTMVTFGERILIPLLDEFKALYPEIILDLS 126

Query: 128 LDNKDIDISMDYADCAIR----LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             ++   +S D  D AIR      + +Q+  L+  + + +     A+P YL +   P   
Sbjct: 127 FSDELSTLSRDEVDIAIRGGYAPNERVQAVRLMDNEFIPV-----ASPDYLASNGTPKHA 181

Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L  H  + F    G     C E   WL    + +    IS    N+   + +  V G 
Sbjct: 182 TDLRDHQGLFFRTPNGPHPWVCEEKGQWLDVSGKALT---IS----NNSTWLRREAVAGR 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITP--------SFTVYFCYPEALKNTGKLKAFRNFI 290
           GI + P + V+++ +  ++ E  I P        +  +Y  Y +      K+K   +F+
Sbjct: 235 GICMTPRWSVQEDLDNGKVQELTIKPKVRVTQNKNLAIYLLYQKQQYAVPKVKVAVDFL 293


>gi|170735217|ref|YP_001774331.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821255|gb|ACA95836.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 310

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 13/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+    VF  VA   SF  AA +L ++ S++S  +  LE  +G++L  R  R  +LTE G
Sbjct: 16  DFFSFTVFLAVAARRSFRGAATELEITPSAVSHSVKALERRLGVRLLNRTTRSTSLTEAG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          ++    E+ +    PSG +RI  +    + +L+  L  FL  YP++ 
Sbjct: 76  ERLAAKLRPAVSIIDEAMREVDDLRSAPSGTVRINASEGAIRLILRPVLARFLKSYPEVH 135

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++ D +  DI     D  IRL + +    +    +  +   A A+P Y      P + 
Sbjct: 136 LDIVSDGRLTDIVAAGFDAGIRLAEAVPQDMVAIPLMGNVRFAAVASPAYFAAHGRPATP 195

Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L +H+ I F    G +     E      T+D          L +     ++   + G 
Sbjct: 196 HDLYRHDCIRFRFESGSIYQWEFERRGVSETIDVS------GSLTLTDQPLMVDAAMDGI 249

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA +PD++V +   +  L R+++D   P   +   YP     +  L+A   FI
Sbjct: 250 GIAFVPDHLVIEPLRDGRLERVLDDWCAPFPGLCLYYPGHRHVSQALRALIAFI 303


>gi|78063588|ref|YP_373496.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971473|gb|ABB12852.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 309

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 122/269 (45%), Gaps = 9/269 (3%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     +++
Sbjct: 25  QLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGEAFYRECAEVVGRVNELTDQMR 84

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
           E    P+G+LRI        +     L EF   YP IQ+ +I++++ +D   +  D A +
Sbjct: 85  ELRATPTGRLRIQMLPGFALDHFGAPLMEFNRRYPGIQLDVIVNDRVVDPVEEGFDIAFQ 144

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
           +  PI S SLI+R+L T+     A+P YL     P   ++L +H    +     +     
Sbjct: 145 IFPPI-SESLIERRLFTVRRLFCASPAYLDAHGAPQHPRDLLQHTTALYSGYPSRN---- 199

Query: 206 NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261
            W  T    + E  +   ++ NS   + +Y + G G+  LP  +  +      LV I+ D
Sbjct: 200 RWTMTRGDEVVEMELPGMIRSNSVHLLREYALSGGGVVCLPTLVASEALVAGRLVPILTD 259

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +    YP   +   K+KA   F+
Sbjct: 260 FQLAPLSFAAVYPATQRQALKVKALVEFL 288


>gi|269963662|ref|ZP_06177984.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269968367|ref|ZP_06182385.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269826994|gb|EEZ81310.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269831574|gb|EEZ85711.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 292

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF +AA    +S + + + +S LE  +G +L +R  R  +LTE G   +
Sbjct: 7   MKVFAYVVEHGSFRNAAHHFDISPTMVGKHVSFLEQSLGTQLIHRTTRKQSLTEAGRLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   +   +  +Q    +P+G +++   +  G+ ++   + +FL  +PD+ ++L+
Sbjct: 67  QECHRIIEDITNAENLIQTLINRPTGTVKVNCPVTYGKKVIAPIVADFLAEFPDLNVELM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN  ID     AD  IR+ + +  SSL+ RKL   HM   A+P YL+      S+ +L+
Sbjct: 127 LDNNLIDPYRSEADVIIRIGELV-DSSLVARKLGEYHMTYCASPSYLEQHAPIQSLDDLE 185

Query: 188 KHNLITF 194
            H+ + F
Sbjct: 186 HHHCLGF 192


>gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151282981|gb|ABR91391.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 314

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  ++ + +   V  +GSF+ AA +L +  +++SR+I  LET +  ++  R  R L++T
Sbjct: 1   MTDRFESMALLVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +  +++  +  +      P G L I T I  G+  +   + +FL  YP
Sbjct: 61  EAGQAYVAACRRILEEVDEAERAVSGEYAAPKGDLVITTPIVFGRKHVMPVVAQFLKAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++++L +  + +  ++ D A+R+ + +  S+++  ++ TI+    A+P YLK    P
Sbjct: 121 DINVRVVLADHVVHLLEEHVDIAVRVGE-LPDSNMVAARIGTINRVMCASPAYLKKNGTP 179

Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227
               +L KH  ITF G + PK  +    L    R I  P  S + VN+
Sbjct: 180 KKPDDLSKHQCITFDGLMAPKLWQ----LCENGREINVPVFSRVVVNT 223


>gi|78061771|ref|YP_371679.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969656|gb|ABB11035.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 300

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 10/287 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 3   IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 63  EAALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPILAQLRRNHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P+Q  +L+ R++  I +  YA   YL     P
Sbjct: 123 GLVIELVPTDRIQDVLKREADIAVRMAPPVQ-EALVARRIGEIDVALYARDDYLARNGSP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLG 238
            +I EL  H LI F  + P       ++ ++ R  P+ +     L+ +S ++ +     G
Sbjct: 182 TTIDELAHHPLIGFDTVTP-------FIRSMGRSMPLWKRDAFALRTDSNVAQLAMIRAG 234

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            GI      + K +P LVR++ D        +    E L+++ + +A
Sbjct: 235 YGIGFCQSGLAKRDPRLVRVLPDGPAMQLETWGVMHEDLRSSPRCRA 281


>gi|222082250|ref|YP_002541615.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726929|gb|ACM30018.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 314

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 137/290 (47%), Gaps = 10/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  +  V  +GSFT AAE+L ++++ +S Q++ LE E+G+ L  R  R L  T++G  
Sbjct: 8   NRLIFYTTVVDTGSFTLAAERLGVAKAVVSHQVARLEQELGVTLLTRTTRRLHATDEGRL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  + E    E+ + + +PSG L +  ++D G  ++   +  +   +P +Q+ 
Sbjct: 68  FYGRCVIILREAEAAYAEMSQKASEPSGMLTLTASLDYGAAVVAPTIAAYRQRFPQMQVN 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D+  +D++    D AIR+   +  SS   R+L T   +  AAP  +     P     
Sbjct: 128 VIFDDDVMDLAAGQVDLAIRVGW-LADSSNQARRLGTFDQYLVAAPSLIGAM--PSMSSP 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243
            D  NL    +   +      W+ +  +R      ++C            CVL G G+++
Sbjct: 185 ADAINLPWVANAALR--NPLRWIFSHAERETVTIDVNCPVTADKTPAAYACVLAGVGVSV 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            PDY+   +     LVRI+ D   P+  ++  +P A     +++AF + +
Sbjct: 243 FPDYMAAKDIEAGRLVRILPDWSLPAGGIHAVFPSARFRPARVRAFVDML 292


>gi|254426162|ref|ZP_05039879.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335]
 gi|196188585|gb|EDX83550.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335]
          Length = 293

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 90/189 (47%), Gaps = 1/189 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  +A  G  T AA  L LS +S S ++  LE  VG +LF R  R ++LT  G    
Sbjct: 6   LRLFIRIAELGGVTAAAHDLSLSPASASARLVKLEEIVGFRLFNRTTRAVSLTTDGELFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    LET    +Q       G LRIA     G+  +   L EF   YP +++ L 
Sbjct: 66  PYAQQTLETLETGLNTVQGQEKSAQGLLRIAMPGSFGRMYIIPLLAEFQTCYPRVRLDLR 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+     D  IR   P+  SSLI RKL        A+P YLK    PL+  +L 
Sbjct: 126 LSDEVLDVVEGAYDLIIR-NAPLSDSSLIVRKLAFDRRLLVASPTYLKQHGVPLTPADLA 184

Query: 188 KHNLITFGD 196
           +H  +T G+
Sbjct: 185 RHRCVTLGE 193


>gi|150378372|ref|YP_001314966.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032919|gb|ABR65033.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 299

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 137/291 (47%), Gaps = 14/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  V+   SFT AA+++ +S +  S+ +  LE  +G +L  R +R ++LTE G    
Sbjct: 7   LRLFCTVSELKSFTAAADRIGISPAMASKHVMRLENRLGTRLLNRTSRHVSLTETGWLYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +  +   ++ P G L+++  +    N     L E+   YPD+ + + 
Sbjct: 67  NQAKQLLEGLDEVEAAIGNVTMAPRGTLKLSAPVCAASNGFVSRLAEYNRRYPDVCLDVD 126

Query: 128 LDNKDIDISMDYADCAI-RLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  + +++  +  D A+ R   P +    L+ R L  I  H  A+P YL+    P  + +
Sbjct: 127 LSGRMVNLVDEGFDLALRRATSPDRLDLGLVARPLADIEFHLMASPEYLERAGRPKGLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY--LSIMQYCVL-GSGIA 242
           L+ H L+ F       + D   L   +R   + +I+   V S    +I+Q   L G G+ 
Sbjct: 187 LNGHALLRFSG---ANLSDIMELKGANR---QSKITFRTVMSSDNETILQLAALRGMGLV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++ + +     L  ++ + I  S T++  YP     + K++ F +F+
Sbjct: 241 YLPKWMTEQDIAAGRLETVLPNSIAFSITLFAVYPTRKHLSAKVRTFIDFM 291


>gi|83955961|ref|ZP_00964472.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83839725|gb|EAP78903.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 298

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 7/253 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +   G F  +A +  +S S++SR ++ LE ++ + L  R  R + +T +G+ + 
Sbjct: 13  LAAFVGIVDDGGFAESARRRGVSASTLSRSVTRLEEQLKVTLLRRTTRSIEITPEGAAVL 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + ET Q E+  S   P+G LR+   +    ++L   L EF   YP IQ+ + 
Sbjct: 73  AEAREILDRSETLQ-EIATSGQAPAGPLRVNAPVPYVLHVLAPRLAEFRAEYPGIQLSID 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+   +AD AIRL + +  S ++ R L        AAP YL     P +  +L 
Sbjct: 132 MTDALVDLIGSHADVAIRLGQ-LPDSDMLHRPLGRTAWKLVAAPEYLDRNGWPQTPTDLA 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           K   + F    P  +    + A +  P+  P    +   +  ++ Q  + G GIA   D+
Sbjct: 191 KLEQVRFA--APDHINTLRF-AGLSTPVTVP--PAVTAGNGEAVRQMVLGGLGIARFSDF 245

Query: 248 IVKDNPNLVRIME 260
           ++ D+ +  R++E
Sbjct: 246 MIADDIDAGRLVE 258


>gi|119383081|ref|YP_914137.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119372848|gb|ABL68441.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 324

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 139/294 (47%), Gaps = 14/294 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  F  V   G+ T AA +L+LS+S +S++I+ LE  +G  LF R+A  +T T
Sbjct: 1   MRYDLNDLETFLTVMELGTVTAAAARLNLSKSVVSKRITDLEATLGAALFRRNAGRITPT 60

Query: 61  EQG----SKLHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEF 115
           E       +L    +E+    E+T  ++    + P  G L +A  +  G   L   +  F
Sbjct: 61  EAALRLAERLRPALAELIAAAESTAWDMD--GLAPLRGSLSVAAPMSFGVLHLGPIIARF 118

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
               P+++I +  D++  D++ +  D  IR+ K ++  +L+QRKL      A A+P YL 
Sbjct: 119 AAQNPELEISVDYDDRSRDLAREGFDIGIRIGK-MRDKALMQRKLCEDASIACASPAYLD 177

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P ++ +L +H +I +  L    +  F        P  + R+S   +N+  +I    
Sbjct: 178 RKGRPQTLADLREHEVIGYSHLPNSQLWQFQDRDRFVSPFVQGRLS---MNNGEAIRDMT 234

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + G G+A+LP ++V     +  L R++    T    +   +P       KL+ F
Sbjct: 235 IEGLGLAMLPGFVVAPALADGRLERVLPGFGTRPLPIVAVWPPVQPMPAKLRRF 288


>gi|194431656|ref|ZP_03063947.1| HTH-type transcriptional activator TtdR [Shigella dysenteriae 1012]
 gi|194420012|gb|EDX36090.1| HTH-type transcriptional activator TtdR [Shigella dysenteriae 1012]
 gi|320179307|gb|EFW54265.1| Putative transcriptional regulator LYSR-type [Shigella boydii ATCC
           9905]
 gi|332086941|gb|EGI92076.1| HTH-type transcriptional activator ttdR [Shigella dysenteriae
           155-74]
          Length = 310

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLSRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|16763713|ref|NP_459328.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167993350|ref|ZP_02574445.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168465405|ref|ZP_02699287.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194444233|ref|YP_002039573.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197247663|ref|YP_002145313.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265075|ref|ZP_03165149.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205351653|ref|YP_002225454.1| lysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855815|ref|YP_002242466.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|16418833|gb|AAL19287.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194402896|gb|ACF63118.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195631607|gb|EDX50127.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197211366|gb|ACH48763.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197243330|gb|EDY25950.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205271434|emb|CAR36245.1| putative lysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205328599|gb|EDZ15363.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|206707618|emb|CAR31902.1| putative lysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261245616|emb|CBG23412.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992024|gb|ACY86909.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156945|emb|CBW16428.1| putative lysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911366|dbj|BAJ35340.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225049|gb|EFX50110.1| Putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323128647|gb|ADX16077.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326626685|gb|EGE33028.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332987281|gb|AEF06264.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 321

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 10/259 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I +   I R+L T      A+P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDI-NELYIARQLATNRRILCASPEYLERHGKPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243
           L +H+ +    +I +    F NW+ T  +     R++     NS   ++ + + G GI L
Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255

Query: 244 LPDYIVK---DNPNLVRIM 259
             ++ V    +   LVR++
Sbjct: 256 RSEWDVAQYIERGELVRVL 274


>gi|319897018|ref|YP_004135213.1| hth-type transcriptional regulator [Haemophilus influenzae F3031]
 gi|317432522|emb|CBY80880.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           F3031]
          Length = 305

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 134/289 (46%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLEANGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L+ HN    G L    M   NW+ +        +I    V NS  +++     G GIA L
Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 240 AKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|291619112|ref|YP_003521854.1| AaeR [Pantoea ananatis LMG 20103]
 gi|291154142|gb|ADD78726.1| AaeR [Pantoea ananatis LMG 20103]
 gi|327395442|dbj|BAK12864.1| HTH-type transcriptional activator AaeR [Pantoea ananatis AJ13355]
          Length = 305

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 121/273 (44%), Gaps = 11/273 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSFT AA QLHLS SSIS+ ++ LE  + +KL  R  R + LTE G   +
Sbjct: 7   MSIFAKVVELGSFTAAARQLHLSVSSISQIVAKLEDALQVKLLNRSTRSIGLTEAGKIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +      +L   +  P G LRI ++  + QN+L G   + L  YP + + L+
Sbjct: 67  QGCRRMLAEANQVHEQLYAFNNTPIGVLRIGSSSTMAQNVLAGMTSDMLRDYPGLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   ++ SSL  R+L  + M   AA HYL     P    ++ 
Sbjct: 127 TGIPAPDLIADGLDVVIRV-GALKDSSLFSRRLGAMPMVVCAAKHYLTQHGTPEKPGDIT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           K   + +        E       V R   + R      N   +++++   G+GIA +P  
Sbjct: 186 KFAWLEYSVRPDNNFELIAPEGIVTRLSPQGRFVT---NDSQTLIRWLKAGNGIAYVPMM 242

Query: 248 IVKDNPNLVRIMEDVITPSFT-----VYFCYPE 275
            V D      I  D++ P +      VY  Y E
Sbjct: 243 WVADEIKKGEI--DILFPQYQSDPRPVYALYTE 273


>gi|260899715|ref|ZP_05908110.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308106880|gb|EFO44420.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
          Length = 307

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G  
Sbjct: 5   NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I+
Sbjct: 65  FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+     D AIR  +P  S+ ++     +      A+P Y+    E  S  +
Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGSNERILCASPEYVATHPELTSPAD 184

Query: 186 LDKHNLITF 194
           L +HN + +
Sbjct: 185 LTQHNCLCY 193


>gi|271499880|ref|YP_003332905.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343435|gb|ACZ76200.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 297

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 123/270 (45%), Gaps = 7/270 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ I  +E  +G++L  R  R +  TE G +L 
Sbjct: 9   LTAFVVVAEERSFTKAALRLGMAQSALSQIIRRVEERLGLRLLARTTRSVAPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H L+     L +   +PSG +R+ T     + +L   +K  L   P+I I++ 
Sbjct: 69  AKLGPMLHDLDLMISSLGDLRNRPSGTIRLTTVEHAAKTILMPAIKRLLPENPEIHIEIN 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+  +DI  +  D  IRL   I    +  R    I M   A+P YL     P    E+ 
Sbjct: 129 VDHALVDIVANQFDAGIRLGGEIDRDMIAMRIGPDIPMAIVASPAYLTRFPAPKIPTEIV 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN+I F   +P       W L +  R I       L VN+   ++   + G G+  +  
Sbjct: 189 NHNVINF--RLPTSGTVIGWRLMSDGREIKVKGKGQLVVNTIELLVNAVLDGHGLGYIHL 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCY 273
             V+   D+  L++++ D  TP    Y  Y
Sbjct: 247 DQVQGFIDSGELIQVL-DKFTPDIPGYHLY 275


>gi|209548512|ref|YP_002280429.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534268|gb|ACI54203.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 308

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 128/294 (43%), Gaps = 9/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + V   V   GS + A+  L    +++SR++S LE  +  +L  R  R +TLTE G  
Sbjct: 5   DAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRTVTLTEAGRS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+  ++E  +         P G L +   I  G+  +   + +FL  YPDI ++
Sbjct: 65  YVEAAREILDRVEEAERTAAGEYSVPKGALIMTAPIVFGRLHVLPVVVDFLKAYPDINLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YL     P    +
Sbjct: 125 LMLGDRLSNLVEDHIDVALRIGN-LPDSNLIATRLGAIRRTVYASPDYLARQVTPRHPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ ITF  +        +W  T   R +  P  S L VN+  + +   V G GI  +
Sbjct: 184 LAAHDCITFDSM----ASTLSWTFTEGKRGLTVPIRSRLAVNTAEAAVDAAVAGLGITRV 239

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y          L  ++ D   P   V+  YP       KL+A  +F   + R
Sbjct: 240 LSYQAARAETAGLLAPLLADFEPPPAPVHLVYPAQGLVPLKLRALIDFATPRLR 293


>gi|149189756|ref|ZP_01868037.1| putative transcriptional regulator, LysR family protein [Vibrio
           shilonii AK1]
 gi|148836405|gb|EDL53361.1| putative transcriptional regulator, LysR family protein [Vibrio
           shilonii AK1]
          Length = 313

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 143/305 (46%), Gaps = 35/305 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  FY  A  GSF  AA +L +S +++S+QI  LE  +G  LFYR  R + LT +G +L+
Sbjct: 11  LYYFYKAAELGSFKVAANRLFVSAAAVSQQIRQLEESLGCHLFYRQHRKVLLTPEGQQLY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPS-GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI-- 124
           R  ++ +  + T    +Q  +  P+  +L I+T     Q+ L   ++ F    PDI +  
Sbjct: 71  RELAKGFEHIFTG---VQSVNQDPNPNRLSISTLPSFAQHWLVPRIQSFRQQNPDIALLI 127

Query: 125 ----QLI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
               QL+   ++ +DI + Y +    + + +QS  L++  +  +    Y   H + +   
Sbjct: 128 EPNNQLVSFQDQSVDICLRYGEG---IYEGVQSHLLMEDIIYPVCHPLYQQQHQIYD--- 181

Query: 180 PLSIQELDKHNLI--TFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              +Q+L + +LI  T+ D+      D+N WL  V  P+G      LQ N    +++  +
Sbjct: 182 ---VQDLHRADLIEDTWPDM------DWNLWLQHVGAPVGN---RTLQYNGSHFVVEGAL 229

Query: 237 LGSGIALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              G+ L+     Y       LVRI    + P F  Y C PE   N  KLK F  ++  +
Sbjct: 230 SVQGVGLIKHSLAYRYIKEGTLVRIGNYALKPKFAYYLCAPEHYFNRPKLKIFIQWLQQE 289

Query: 294 ARDWK 298
             D+K
Sbjct: 290 VADFK 294


>gi|91785149|ref|YP_560355.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689103|gb|ABE32303.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 327

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A+ GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYP++   L 
Sbjct: 67  NCCRQALQSLDDAEAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVTFALT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   ++  +  D AIR   P Q SSL+ RKL        A+P Y+    EP      D
Sbjct: 127 LSDSLANLVQEDIDLAIRFGVP-QDSSLVARKLAPNRRVLCASPEYIARKGEP-----KD 180

Query: 188 KHNLITF 194
            H+L  F
Sbjct: 181 PHDLANF 187


>gi|330958307|gb|EGH58567.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 302

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 136/291 (46%), Gaps = 21/291 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F +VA + SFT A ++L +S S + + I  LE  +G +LF+R  R + LT +GS     
Sbjct: 9   LFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEENLGARLFHRSTRSIALTLEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LE  + EL  +   P G+LR+  ++ L   L+   + EF+  +PDI++ +   
Sbjct: 69  CRRILAELEAAEKELSNARDLPRGRLRV--SVPLVSGLVMPVIIEFMRAFPDIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R    +  S L+ +++    +    AP Y +    P    +L +H
Sbjct: 127 DRMVDIIEEGFDVVLRT-GDLSDSRLLSKRMGGFQLRIVGAPDYFERRGMPAFPADLVQH 185

Query: 190 NLI-----TFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +     + G  +L P   ED      +D P        +  N+   ++     G GIA
Sbjct: 186 ACLHHKFPSSGKFELWPLRRED--GADDLDLP------QTMICNTTEILVDVARAGLGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPD+++        LV I++D    + +    +P +   + +L+ F +F+
Sbjct: 238 CLPDFMIASAIKRGELVSILDDYTVHTGSFRLLWPSSKHLSVRLRVFIDFL 288


>gi|322832440|ref|YP_004212467.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167641|gb|ADW73340.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 299

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 133/299 (44%), Gaps = 23/299 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +LR F  VA   SF  AA +L+L+ S++S  +  LE  +G++L  R  R ++ TE G
Sbjct: 5   EFGELRAFVAVAEEKSFRKAAARLNLTASTLSHSLRSLEERLGVRLLNRTTRQVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             L    +EV   L      +++ +     P G +RI T       +    L +F   +P
Sbjct: 65  YAL---LAEVVPALSVISDAMEKVNALRGIPKGTVRINTPRIAADMVFLPQLPKFCQAFP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++L  ++  +DI  +  D  +R+R  +Q      R     H   Y +P Y   C +P
Sbjct: 122 DITLELATNDGFVDIISEGFDAGVRIRGDVQQDMSAVRLTADFHSAVYGSPDYFARCPQP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  +L  H  I   ++    +  + W      R I  P    L V+S +S+M    L  
Sbjct: 182 QTPADLKNHACIGRREIASGSL--YRWEFEKNGRQITVPVSGPLVVDS-VSMMTRIAL-D 237

Query: 240 GIALL-------PDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNF 289
           GI L+        D +V +   L+R++ED  V  P F +Y  YP   +    LKA   +
Sbjct: 238 GIGLVYSAQSAEHDALVAEG-KLIRVLEDWSVTFPGFFLY--YPGHRQLPAALKAVTGY 293


>gi|312883118|ref|ZP_07742849.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369278|gb|EFP96799.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 293

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 136/301 (45%), Gaps = 29/301 (9%)

Query: 3   FDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +++ + S+IS++I  LE ++G++L  R  R +  TE
Sbjct: 1   MDWILSVKSYVNVVDEGSFNGAARRMNTTSSAISKRIHWLEEKIGVQLLKRTTRSVIQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  ++         ++   E +  S  P+G L+I TT+ +G   L   L +FL  YPD
Sbjct: 61  EGALFYQRARAQLDDWQSIIDETRSVSQTPAGVLKIGTTLTIGSKFLVQYLNDFLQAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L+        S+       R  + + S S     L    +  YA+P Y+K   EP 
Sbjct: 121 IRIHLVTTPPGELPSLTLDLFISREIEQLNSLSFKATPLFKQKVGFYASPEYVKLHGEPK 180

Query: 182 SIQELDKHNLITFGDLI---------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           S +EL  H L+ +G+ I          K + + N++ T       P           ++ 
Sbjct: 181 SHEELSAHKLLIWGETIQREISLISGEKILLNGNFVTT------NPE----------ALF 224

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                G G+ L  D ++ ++     L+RI+ D+     TVY  YP+      + K F ++
Sbjct: 225 HAAKSGMGLLLSNDAMIIEDIKAGKLIRILPDITVDESTVYAYYPKLDYQHTRTKLFLDY 284

Query: 290 I 290
           +
Sbjct: 285 L 285


>gi|237808402|ref|YP_002892842.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500663|gb|ACQ93256.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 306

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 117/242 (48%), Gaps = 8/242 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A+S SFT AAEQL +S+S++ + IS LE  +G KLF+R  R L+LT  G       
Sbjct: 16  FVTTAQSQSFTQAAEQLGISKSAVGKSISQLEQRLGTKLFHRTTRKLSLTTAGEAYFEGC 75

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
               + L + +  +      PSG ++I      G+ ++   L      +P++++ L  ++
Sbjct: 76  LVALNTLNSAEATVLHRQNVPSGNIKIDMPAAFGRAVMMPILLGIEEQFPELKLTLTFND 135

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           K ID   +  D  IR  +   S+ L+ +KL    +   A+P YL+    P  + +L KH 
Sbjct: 136 KIIDPIEEGIDLCIRFGEVKDSTDLVAKKLGYQRLVMCASPDYLQRFGTPADLDDLKKHR 195

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCL---QVNSYLSIMQYCVLGSGIALLPDY 247
            I    +  +     +WL   D+   + R +     Q++   +++Q C+ GSG+   P+ 
Sbjct: 196 CI----MGYRKGSPLSWLVK-DKHGNDVRFNPTPTHQISDGDAMIQACLAGSGLTQFPES 250

Query: 248 IV 249
           ++
Sbjct: 251 LL 252


>gi|33593404|ref|NP_881048.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33572760|emb|CAE42690.1| probable LysR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332382813|gb|AEE67660.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 306

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            DWD LR F  VAR+   + AA +L +  ++++R++  LE E+   LF +  + G  LTE
Sbjct: 2   LDWDSLRYFLEVARTQRVSAAARKLGVEHTTVARRVRALEAELDSLLFEKSRSAGYVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   + T +  L       SG +RI  T   G  +L     +F   YP 
Sbjct: 62  DGQRLFVFAEQMESTVHTARENLSGIGQALSGHVRIGATEGFGSYVLTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    +  KL    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCTKLCDYTLMLYGTPAYLARHAPIR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  HN I + D +    E   +L  V   +   ++  L+  S ++     + G  +
Sbjct: 181 ERADLAGHNFIGYVDEL-LFSERLRYLEDV---LPNSQV-VLRSTSVIAQYHATLQGQSL 235

Query: 242 ALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I   +P L  ++ D   IT SF +Y C+ E L+   ++ A   F+
Sbjct: 236 AILPCFIAAQDPRLTPVLPDDIAITRSFWMY-CH-EDLRRLKRVSALWEFM 284


>gi|260775863|ref|ZP_05884759.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608279|gb|EEX34448.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 282

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 25/292 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R    V  +GSFT AAE+L LS+S  S+ ++ +E ++G+ LF+R  R L+++  G   +
Sbjct: 1   MRTVVAVIETGSFTAAAERLGLSKSLTSKYVNQVEAQLGVTLFHRTTRKLSVSPPGWHYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +V  + +    +L   +   SG LR+  +    + LL   +  F   YP+IQI L+
Sbjct: 61  RQAQQVLAQFDKLYSQLDAHNQTASGPLRVTASQGFAEELLSPLIPAFHAQYPEIQIDLL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+ +D+     D A R    +  S L  R L+++   AYAAP         L+ Q +D
Sbjct: 121 VTNQKLDLVEHGIDIAFRAST-LDDSGLHYRPLMSLSSAAYAAPE--------LAEQYVD 171

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR------ISCLQVNSYLSIMQYCVLGSGI 241
           +   +        C+ D N   T   P+           +  + NS   I Q  + G G 
Sbjct: 172 RPEAL-------PCLIDSNLHPTARWPVSNTSQRSRAVKTVFKSNSPRLIRQLTLAGMGA 224

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  PD +         L ++ ED    +F +   Y        +++ F +F+
Sbjct: 225 SYQPDVLAAPYVQRGELQKLDEDFSAMTFPLAALYRGGEYQPERVRVFIDFV 276


>gi|209550507|ref|YP_002282424.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536263|gb|ACI56198.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 296

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 22/293 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   ++T AA +L +SQS++S  +  LE ++G++L  R  R +  TE G +L 
Sbjct: 9   LTAFVVVAEERNYTRAANKLGISQSALSGIVRRLEEKLGVRLLARTTRSVAPTEAGERLV 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   ++    +L E   KP+G +RI T     + +L+  + + L  YPDI I++I
Sbjct: 69  QTLRPMLQDIDQVVADLSEFRDKPAGTIRITTVEHAARTILRPAVTKLLKDYPDIVIEII 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D   +D+  D  D  +RL   +    +  R    + M    +P Y +    P + ++L 
Sbjct: 129 IDYGLVDLVTDRFDAGVRLGVQVAKDMIAVRISDDVPMAIVGSPAYFEQHAPPATPEDLV 188

Query: 188 KHNLITFGDLIPKCMEDFNWL-------ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +H  I         +  + +L         VD P        L  N+   I+   + G G
Sbjct: 189 EHRAINLRLPTSGVLNAWRFLQDGREVRVRVDGP--------LVFNTIDLILDAALDGCG 240

Query: 241 IALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A +P D + K      LV ++     P    +  YP    N     AF+ F+
Sbjct: 241 LAYMPLDQVEKHVAEGRLVAVLRSWTPPLPAYHLYYP----NRASSPAFKLFV 289


>gi|16130956|ref|NP_417532.1| transcriptional activator of ttdABT [Escherichia coli str. K-12
           substr. MG1655]
 gi|89109830|ref|AP_003610.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|157156353|ref|YP_001464520.1| transcriptional activator TtdR [Escherichia coli E24377A]
 gi|170018688|ref|YP_001723642.1| transcriptional activator TtdR [Escherichia coli ATCC 8739]
 gi|170082603|ref|YP_001731923.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|188493021|ref|ZP_03000291.1| transcriptional regulator, trunscation [Escherichia coli 53638]
 gi|193061941|ref|ZP_03043037.1| HTH-type transcriptional activator TtdR [Escherichia coli E22]
 gi|193067398|ref|ZP_03048366.1| HTH-type transcriptional activator TtdR [Escherichia coli E110019]
 gi|194426156|ref|ZP_03058711.1| HTH-type transcriptional activator TtdR [Escherichia coli B171]
 gi|194436795|ref|ZP_03068895.1| HTH-type transcriptional activator TtdR [Escherichia coli 101-1]
 gi|209920531|ref|YP_002294615.1| transcriptional activator TtdR [Escherichia coli SE11]
 gi|218555630|ref|YP_002388543.1| transcriptional activator TtdR [Escherichia coli IAI1]
 gi|218696765|ref|YP_002404432.1| transcriptional activator TtdR [Escherichia coli 55989]
 gi|238902171|ref|YP_002927967.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|253772104|ref|YP_003034935.1| transcriptional activator TtdR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163007|ref|YP_003046115.1| transcriptional activator TtdR [Escherichia coli B str. REL606]
 gi|256019024|ref|ZP_05432889.1| transcriptional activator TtdR [Shigella sp. D9]
 gi|256024360|ref|ZP_05438225.1| transcriptional activator TtdR [Escherichia sp. 4_1_40B]
 gi|260845814|ref|YP_003223592.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O103:H2 str. 12009]
 gi|260857190|ref|YP_003231081.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O26:H11 str. 11368]
 gi|297521598|ref|ZP_06939984.1| transcriptional activator TtdR [Escherichia coli OP50]
 gi|300821653|ref|ZP_07101799.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300917402|ref|ZP_07134068.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300923721|ref|ZP_07139746.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300931945|ref|ZP_07147242.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300950731|ref|ZP_07164619.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300958446|ref|ZP_07170585.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|301021235|ref|ZP_07185267.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|301325588|ref|ZP_07219056.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|301644755|ref|ZP_07244730.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|307139748|ref|ZP_07499104.1| transcriptional activator TtdR [Escherichia coli H736]
 gi|307310315|ref|ZP_07589963.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|309793624|ref|ZP_07688050.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|331643758|ref|ZP_08344889.1| HTH-type transcriptional activator TtdR [Escherichia coli H736]
 gi|331679136|ref|ZP_08379808.1| HTH-type transcriptional activator TtdR [Escherichia coli H591]
 gi|332280124|ref|ZP_08392537.1| transcriptional activator TtdR [Shigella sp. D9]
 gi|1723886|sp|P45463|TTDR_ECOLI RecName: Full=HTH-type transcriptional activator ttdR
 gi|1203799|gb|AAA89140.1| alternate name ygiP; ORF_310 [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789440|gb|AAC76096.1| transcriptional activator of ttdABT [Escherichia coli str. K-12
           substr. MG1655]
 gi|85675861|dbj|BAE77111.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|157078383|gb|ABV18091.1| transcriptional regulator, LysR family [Escherichia coli E24377A]
 gi|169753616|gb|ACA76315.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|169890438|gb|ACB04145.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188488220|gb|EDU63323.1| transcriptional regulator, trunscation [Escherichia coli 53638]
 gi|192932161|gb|EDV84759.1| HTH-type transcriptional activator TtdR [Escherichia coli E22]
 gi|192959355|gb|EDV89790.1| HTH-type transcriptional activator TtdR [Escherichia coli E110019]
 gi|194415464|gb|EDX31731.1| HTH-type transcriptional activator TtdR [Escherichia coli B171]
 gi|194424277|gb|EDX40264.1| HTH-type transcriptional activator TtdR [Escherichia coli 101-1]
 gi|209913790|dbj|BAG78864.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|218353497|emb|CAU99612.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|218362398|emb|CAR00022.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|238862289|gb|ACR64287.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|242378610|emb|CAQ33397.1| Dan [Escherichia coli BL21(DE3)]
 gi|253323148|gb|ACT27750.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974908|gb|ACT40579.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253979064|gb|ACT44734.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|257755839|dbj|BAI27341.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O26:H11 str. 11368]
 gi|257760961|dbj|BAI32458.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O103:H2 str. 12009]
 gi|260447904|gb|ACX38326.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|299881593|gb|EFI89804.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|300314887|gb|EFJ64671.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300415359|gb|EFJ98669.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300419991|gb|EFK03302.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300449968|gb|EFK13588.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300460368|gb|EFK23861.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300525791|gb|EFK46860.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300847639|gb|EFK75399.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|301076909|gb|EFK91715.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|306909210|gb|EFN39705.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|308122581|gb|EFO59843.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|315062368|gb|ADT76695.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|315137654|dbj|BAJ44813.1| transcriptional activator TtdR [Escherichia coli DH1]
 gi|315617132|gb|EFU97741.1| HTH-type transcriptional activator ttdR [Escherichia coli 3431]
 gi|323154515|gb|EFZ40715.1| HTH-type transcriptional activator ttdR [Escherichia coli EPECa14]
 gi|323163110|gb|EFZ48943.1| HTH-type transcriptional activator ttdR [Escherichia coli E128010]
 gi|323168096|gb|EFZ53783.1| HTH-type transcriptional activator ttdR [Shigella sonnei 53G]
 gi|323173695|gb|EFZ59324.1| HTH-type transcriptional activator ttdR [Escherichia coli LT-68]
 gi|323183643|gb|EFZ69040.1| HTH-type transcriptional activator ttdR [Escherichia coli 1357]
 gi|323377044|gb|ADX49312.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323935938|gb|EGB32233.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1520]
 gi|323941842|gb|EGB38021.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|323946870|gb|EGB42888.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|323971817|gb|EGB67042.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
 gi|324018224|gb|EGB87443.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
 gi|324119668|gb|EGC13549.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
 gi|331037229|gb|EGI09453.1| HTH-type transcriptional activator TtdR [Escherichia coli H736]
 gi|331073201|gb|EGI44524.1| HTH-type transcriptional activator TtdR [Escherichia coli H591]
 gi|332102476|gb|EGJ05822.1| transcriptional activator TtdR [Shigella sp. D9]
 gi|332345014|gb|AEE58348.1| HTH-type transcriptional activator TtdR [Escherichia coli UMNK88]
          Length = 310

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|332531552|ref|ZP_08407449.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332038915|gb|EGI75344.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 355

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 137/337 (40%), Gaps = 54/337 (16%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS T AA    ++ + + R++  LE  +G+KL  R  R L+LT +GS  
Sbjct: 6   QMESFVAVATRGSLTAAARAEGVAPAIMGRRLDALEERLGVKLLLRTTRRLSLTHEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +   +  +    VK SG LR+      G+  +   +  F  L+ D+ I L
Sbjct: 66  LEDCQRLLADIANAEAGVSAGGVKASGHLRVTAPAGFGRRHVAPLVPRFRELHTDVTISL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D++ +  DCA+R+   +  SSL+  +L        A P YLK    P + Q+L
Sbjct: 126 NLSDRVVDMAREGYDCAVRVGD-LPDSSLVSVRLADNRRLCVATPEYLKRHGTPQTPQDL 184

Query: 187 DKHNLITFGD----------LIPKCMEDFNWLATVDRPIGE------------------- 217
            + + +               +P+  +  +    +DRP GE                   
Sbjct: 185 ARFDCLVLSSEASQTRGWAFRVPRKAQGLHQEELLDRPEGETVLNADLTGTGLAGADLAG 244

Query: 218 ------PRISCLQVNSYL---------------SIMQYCVLGSGIALLPDYIVKDN---P 253
                 P ++  Q    L                +  +C+ G GIA    + V+++    
Sbjct: 245 AGLSDTPLVNGAQAEGELIYYRPQGPLDCSDGQVLHDWCLAGYGIAWRSTWEVEEDVSAG 304

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LV ++ED   P   +Y  +P+      +L+ + +F+
Sbjct: 305 RLVPVLEDYAAPPNGIYVVFPQRKHLPLRLRLWLDFL 341


>gi|295688208|ref|YP_003591901.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295430111|gb|ADG09283.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 298

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 135/291 (46%), Gaps = 19/291 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  +    SFT AA  L L +S+ +  +  LE  +G +L  R  R ++ T  G 
Sbjct: 4   FEAMRLFVRIVERRSFTQAAADLDLPRSTATEAVQQLEARLGARLLQRTTRQVSPTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   L+  +   ++ +  P G LR+     L +  +  +L +FL  YP++++
Sbjct: 64  AYYRRCLRLLDDLDDAESAFRQRT--PRGLLRVDVQGALARRFVLPDLPDFLAAYPELKL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL   ++ +D+  D  DC +R+   +  S+++ R++  +     AAP YL     P +  
Sbjct: 122 QLTEGDRLVDLVRDGVDCVLRMGD-LTDSAMVARRVALLPEVTCAAPAYLARFGTPRTPD 180

Query: 185 ELDKHNLITF-----GDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +L  H ++ F     G   P +  E  N  A        P  + + VNS  + +   +LG
Sbjct: 181 DLGGHRMVGFLQAATGHPYPLEVTEGGNVRAV-------PVAADVTVNSAENTVAMGLLG 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+  +P Y V+D   +  L+ ++ D       V   YP + + + +++ F
Sbjct: 234 LGLIQVPRYRVEDFLADGRLIEVLADYPPTPTPVSLLYPRSRQLSPRVRVF 284


>gi|126642344|ref|YP_001085328.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 311

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 113/221 (51%), Gaps = 5/221 (2%)

Query: 34  ISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSG 93
           ++  I  LE  + ++L  R  R ++LT  G+  +  T+ +   +   +    ++   P G
Sbjct: 1   MTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYYDRTARILADVADIESSFHDAERGPRG 60

Query: 94  KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSS 153
           +LRI   + +G+ +L   L++F   YPDI + + L+++ +D+  +  DCAIR+ + ++ S
Sbjct: 61  QLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIGLNDRPVDLVGEAVDCAIRVGE-LKDS 119

Query: 154 SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVD 212
           SLI R++ T      A+P YL+   EP SI++L K H  I F     +   +F+W   VD
Sbjct: 120 SLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQKNHKAIHF--FSSRTGRNFDWDFVVD 177

Query: 213 RPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252
             I    +   + VN   + +   + G GI   P Y++ ++
Sbjct: 178 DLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGPRYMLTNH 218


>gi|161525037|ref|YP_001580049.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350220|ref|YP_001945848.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160342466|gb|ABX15552.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189334242|dbj|BAG43312.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 313

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD+ ++L
Sbjct: 66  LQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAVARYRERYPDVHVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+  +  D AI + + +  S L+ ++L   +    A+  Y+     P    +L
Sbjct: 126 TLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASTAYVAAHGAPQCPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
            +H  +  G + P    D  W  T+  P G+  +       +VN   ++      G GI 
Sbjct: 186 AQH--VCLGMVAPGFHYD-EW--TLTGPDGDESVPVTAPPFRVNVAEALAVAVREGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LP Y       +  +VR+M +  +    +Y  Y           A R ++  K R W
Sbjct: 241 GLPLYSAIGGLRSGQIVRVMPEYRSHVMNIYALY-----------ASRQYLDAKIRTW 287


>gi|254249178|ref|ZP_04942498.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875679|gb|EAY65669.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 309

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 121/269 (44%), Gaps = 9/269 (3%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     +++
Sbjct: 25  QLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTDQMR 84

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
           E    P+G+LRI        +     L  F   YP IQ+ +I++++ +D   +  D A +
Sbjct: 85  ELRATPTGRLRIQMLPGFALDHFGAPLAAFNQRYPGIQLDIIVNDRVVDPVEEGFDIAFQ 144

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
           +  PI S SLI+R+L T+     AAP Y+     P   ++L +H    +     +     
Sbjct: 145 IFPPI-SESLIERRLFTVRRLFCAAPAYVDAHGAPQHPRDLLQHTTALYSGYPSRN---- 199

Query: 206 NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261
            W  T    + E  +   ++ NS   + +Y + G G+  LP  +  D      LV I+ D
Sbjct: 200 RWTMTCGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPILTD 259

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +    YP   +   K++A   F+
Sbjct: 260 YQLAPLSFAAVYPATQRQALKVRALVEFL 288


>gi|107023136|ref|YP_621463.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686624|ref|YP_839871.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893325|gb|ABF76490.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652339|gb|ABK12978.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 310

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 13/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+    VF  VA   SF  AA +L ++ S++S  +  LE  +G++L  R  R  +LTE G
Sbjct: 16  DFFSFTVFLAVAARRSFRGAATELEITPSAVSHSVKALERRLGVRLLNRTTRSTSLTEAG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          ++    E+ +    PSG +RI  +    + +L+  L  FL  YP++ 
Sbjct: 76  ERLAAKLRPAVSIIDEAMREVDDLRSAPSGTVRINASEGAIRLILRPVLARFLKSYPEVH 135

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++ D +  DI     D  IRL + +    +    +  +   A A+P Y      P + 
Sbjct: 136 LDIVSDGRLTDIVAAGFDAGIRLAEAVPQDMVAIPLMGNVRFAAVASPAYFAAHGRPATP 195

Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L +H+ I F    G +     E      T+D          L +     ++   + G 
Sbjct: 196 HDLYRHDCIRFRFESGSIYQWEFERRGVSETIDVS------GSLTLTDQPLMVDAAMDGI 249

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA +PD++V +   +  L R+++D   P   +   YP     +  L+A   FI
Sbjct: 250 GIAFVPDHLVIEPLRDGRLERVLDDWCAPFPGLCLYYPGHRHVSQALRALIAFI 303


>gi|262280597|ref|ZP_06058381.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258375|gb|EEY77109.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 300

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 146/295 (49%), Gaps = 10/295 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +GSF  AAE L  + S +SR ++ LET++ + L  R  R L LT++G +
Sbjct: 6   EELVAFITIIDTGSFVAAAEHLKQTPSGVSRSLTRLETKLDVTLLERTTRKLKLTQEGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++ ++L   + ELQ+S    +G +RI +      +++   + +F   YPDI+I+
Sbjct: 66  FLVKARKILNELNAAEEELQKSDQGTAGLIRIDSATPFVLHVIAPLMHKFRECYPDIEIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ ID+     D A R  + +  SSL  + +    +   A+P+YL     P   +E
Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLFIVASPYYLAIKGTPTQPEE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L++H+LI F    P  +  +      +    + +I   + +S  ++ Q  + G GIA L 
Sbjct: 185 LEQHDLIGFTR--PAYINSWPIKVGDEYFFAQAKI---KASSGETVRQLTIRGHGIARLS 239

Query: 246 DYIV-KD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++ V KD     L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 240 EFEVWKDIEEGRLIALFEDQIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|325274365|ref|ZP_08140460.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324100499|gb|EGB98250.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 316

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 126/272 (46%), Gaps = 9/272 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 10  ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  F+  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSSVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +    
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQGYLDSHAPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L +H  I++ D +    E       +       R + + +  Y + +Q    G G
Sbjct: 189 RQVADLARHPFISYVDDLAFSSELLYLANLIPGATAHLRSTSV-IAQYTAALQ----GRG 243

Query: 241 IALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
           +A+LP ++   +P LV ++ ED+ +T  F +Y
Sbjct: 244 LAILPCFLAAQDPRLVTVLPEDIEVTRQFWMY 275


>gi|296157336|ref|ZP_06840172.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295892672|gb|EFG72454.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 327

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A+ GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYP++   L 
Sbjct: 67  NCCRQALQSLDDAEAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVTFALT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   ++  +  D AIR   P Q SSL+ RKL        A+P Y+    EP      D
Sbjct: 127 LSDSLANLVQEDIDLAIRFGVP-QDSSLVARKLAPNRRVLCASPEYIARKGEP-----KD 180

Query: 188 KHNLITF 194
            H+L  F
Sbjct: 181 PHDLANF 187


>gi|255262596|ref|ZP_05341938.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
 gi|255104931|gb|EET47605.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
          Length = 297

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 135/290 (46%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD ++VF  VAR+ S + A + L +  +++ R+++ LE E+G  LF +  +G  LT+ 
Sbjct: 2   MNWDDMKVFLAVARAESLSGAGKVLKVDPATVGRRVARLEEELGGALFVKSPQGYALTDL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+++     +    L   + E Q  + + SG++R+         LL     +     PD+
Sbjct: 62  GARIDAHARQAEAALSLAREEAQGQAEQLSGQIRVGAPDGCANFLLPKVCADISRENPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q++   + +++S   AD AI +  P     L+Q K+    +H  A+  YL +C    +
Sbjct: 122 EVQILALPRVVNLSKREADMAITVSPPDTGRLLVQ-KVTDYKLHVVASKPYLAHCDPITT 180

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L  H ++ +  D+I     D+     VDR         +Q+N+          G+G+
Sbjct: 181 KADLKNHPIVGYIHDMIFDAELDYLREMDVDRVTVASNSVAVQLNALRQ-------GAGV 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +  D+ +     L RI+ D I+ + + Y     + K   +LK F + + 
Sbjct: 234 GIGHDFALPLIGRLERILMDEISLTRSFYLVRHASDKRVERLKRFADRLM 283


>gi|170696811|ref|ZP_02887916.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138280|gb|EDT06503.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 328

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 139/301 (46%), Gaps = 25/301 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+  YP+
Sbjct: 65  AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTVSQTILSTILPEFMHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ +D+  D  D A+R+R  P ++++++ R L         AP  L+    P
Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L   +L +   +     +P    D   +  +  P G       EPR+    V + LS ++
Sbjct: 185 LQPNDLARFETLD----VPTT--DGRHVYHLIAPDGSRHVHEHEPRL----VTADLSTIR 234

Query: 234 YCVL-GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             VL G GIA LP+ +         L  +M     P+  +Y  +   +   G + A R F
Sbjct: 235 EAVLCGVGIAALPEMMYGAPLRTGQLSPVMPGWTFPAPQLYAVF---VSRQGMVPAVRAF 291

Query: 290 I 290
           +
Sbjct: 292 V 292


>gi|150396063|ref|YP_001326530.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027578|gb|ABR59695.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 297

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 118/272 (43%), Gaps = 11/272 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   SFT AA +L  SQSS+S  +  LE  +G++L  R  R L  T  G +L 
Sbjct: 9   LLAFLAVAEEKSFTRAAARLGTSQSSLSLILKRLEARLGVRLLTRTTRSLAPTNAGEQLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    +E   + L E   +P+G  RI         +L   L  FLL YPDI+++L+
Sbjct: 69  ATLGPALGSIEAQLLALGEFRDRPAGSFRITAGQHAIDTILWPKLAPFLLEYPDIKVELV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++   DI  +  D  +RL   ++   +  R      M   AAP    +   P   Q+L 
Sbjct: 129 AESALTDIVTERFDAGVRLGDQVEKDMIAVRIGPLARMIVVAAPSCFVDRARPQVPQDLT 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H  I     +P     + W    +R   E R+     +  N    ++   + G G+A +
Sbjct: 189 GHRCINL--RLPSYGGFYAW--EFERDGHEVRVRVDGQVAFNGVPQLVNAALDGFGLAYV 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            + +V++   +  LV+I+ D  TP F  Y  Y
Sbjct: 245 HEDVVREHLKDGRLVQILGD-WTPPFPGYHLY 275


>gi|78062096|ref|YP_372004.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969981|gb|ABB11360.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 290

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 25/292 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR  SFT AAEQL ++Q ++SRQI  LE   G  LF RHA+GLTLT +G +L 
Sbjct: 10  LQIFSTVARHRSFTRAAEQLCITQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V +E + ++E   I ++ +  +    L++ T +      +   +  F   +PD+ +Q+ 
Sbjct: 70  PVVNESFARIE--DISMRLTRQRTDLALKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQE 185
              +  +D S +  D A+ +      + +    L    +    AP   +    PL S+ +
Sbjct: 125 TAWQHVVDFSTEPFDAAV-VYGTSPGAGVFALPLFDERLTPVCAPELRQTS--PLDSVGD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYCVLG 238
           L +H L+          +  +W A +D        P   P    L + +  ++  + V  
Sbjct: 182 LARHTLLH------PTRDHRDWRAWLDHAGERSVDPARGPTFDTLDLATNAAMQGFGVAI 235

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + L+ D +      L R  + V+      +F YPE + N  K++AF ++I
Sbjct: 236 GDVTLVDDDVSAR--RLERPFDIVLETGARYFFVYPENIGNQQKIRAFSDWI 285


>gi|328469377|gb|EGF40323.1| transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 307

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G  
Sbjct: 5   NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I+
Sbjct: 65  FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+     D AIR  +P  S+ ++     +      A+P Y+    E  S  +
Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGSNERILCASPEYVATHPELTSPAD 184

Query: 186 LDKHNLITF 194
           L +HN + +
Sbjct: 185 LTQHNCLCY 193


>gi|269968260|ref|ZP_06182286.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827117|gb|EEZ81425.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 294

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 21/289 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +   V  SG F+ AA+ L +  + +SR +S +E+++GI L  R  R + +TE+G +
Sbjct: 6   DELEILMAVVDSGGFSSAADALGIQVARVSRAVSKVESQLGITLLNRTTRRVEVTEEGHQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +++  + E+      P G+LR+        + L   ++ F   YPDIQ+ 
Sbjct: 66  FVEAVRLGLLQIQQAEEEIITRGELPKGRLRVDAASPFVLHQLVPLIQPFKEAYPDIQLD 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ + +  S+L  + L T  +   A P YL     P ++ +
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGR-LSDSTLHAKPLGTSPLFIVATPGYLSKRGFPEAVGD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HNLI F        +  N        + EP I     +S  ++ Q  + G+GIA L 
Sbjct: 185 LRSHNLIGF-----SGAKVLNQWPLRGFEMIEPDILS---SSGETVRQLVLAGNGIACLS 236

Query: 246 DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++VKD+ +  R+          V     E + NTG+ +   N +F K+
Sbjct: 237 GFMVKDDLDSGRL----------VALFESEKITNTGREQV--NAVFYKS 273


>gi|119896868|ref|YP_932081.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119669281|emb|CAL93194.1| probable transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 296

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 5/189 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W+    F  VA+SGSFT AAEQL L +SS+S  ++ LE ++G +L  R  R L LTE
Sbjct: 3   TINWNDWYAFATVAQSGSFTRAAEQLDLPKSSVSHAVARLERQLGQRLIERSTRRLALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG ++      ++ +L+    E  ++  +P G LRIAT  + G   L   + + L  +P 
Sbjct: 63  QGERMLAQVLPLFERLDAVAAEAGDARDEPQGVLRIATPYEFGAIQLGEVVNDVLNRHPR 122

Query: 122 IQIQL---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +QI++   IL  +      D    A    + +  S  + R++ ++    YAAP  ++   
Sbjct: 123 LQIEIDVRILGAEPASGGYDVVFFAT--GEALPDSERVVRRVYSVARGLYAAPALVRRLG 180

Query: 179 EPLSIQELD 187
            P S+ EL+
Sbjct: 181 LPRSVAELE 189


>gi|116250067|ref|YP_765905.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254715|emb|CAK05789.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 323

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 17/290 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA+  SF  AA +L ++ S+IS+ +  LE  VG  LF R  R + LTE G +
Sbjct: 13  DGVEAFLSVAQHRSFRKAAGELGVTPSAISQAVRALEERVGAVLFIRTTRSVGLTEAGER 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + +L       +E   +P+G LR+     +   LL+  +  F   +P+I+++
Sbjct: 73  FLTRAKPAFEELVAASALARELGQRPAGLLRLTVPPAVVPILLEPLIASFCQAFPEIEVE 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  + + +DI+ D  D  IRL + I +  +  R   +  +    +P YL+    P  I +
Sbjct: 133 IAANEELVDIAADGFDAGIRLGQFIAADMVAVRLTPSFPLVVVGSPEYLRRRGWPERIDD 192

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +H  I      G + P       W   +  +PI       L  + + +++   +   G
Sbjct: 193 LRQHACIRMRRSNGSIAP-------WSFVIGKKPIEAVVSGPLIAHDFPTMLGATIGDMG 245

Query: 241 IALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +A +P+ I    VK    LVR++E     +  V+  YP   +   KL+AF
Sbjct: 246 LAQVPEPIAAGPVKAG-KLVRVLEVFEPVAPGVFLYYPSRHQVMPKLRAF 294


>gi|82776963|ref|YP_403312.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|81241111|gb|ABB61821.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
          Length = 314

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 143/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 15  NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 75  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 135 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 194 LSA---------LP-CL----LIKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQ 239

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 240 WCLDGQGIALRSWWDVSENIASGHLVQVLLEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298


>gi|262377558|ref|ZP_06070779.1| transcriptional regulator [Acinetobacter lwoffii SH145]
 gi|262307445|gb|EEY88587.1| transcriptional regulator [Acinetobacter lwoffii SH145]
          Length = 296

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 126/266 (47%), Gaps = 9/266 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D+L VF  +A  GS    AEQL+ + S+ISR +  LE ++ +KL  R  R L LT
Sbjct: 1   MKSTFDELLVFVTIADCGSIVKTAEQLNQTTSAISRTLQRLEKKLNVKLIERTTRSLNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G        ++   L   +  L     +P+G ++I +      +++   + EF+  YP
Sbjct: 61  YDGKIFLERARKLLSDLNEAEELLINPGTEPTGLIKIDSATPFVLHVIIPLIPEFIERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I+L   +  ID+     D AIR    ++ SSL  + L    ++  A+  YLK    P
Sbjct: 121 KISIELTSHDHVIDLLEHKIDVAIRF-GDLEDSSLYAKLLYKSRLYIVASAEYLKKNNLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI EL++H L+ F    P  +   NW   ++  + +   S    N   S+ Q  + G G
Sbjct: 180 KSIIELNQHRLLGFSH--PLHLN--NWPIYINDQLYKTSPSITASNGE-SVRQLALQGVG 234

Query: 241 IALLPDYIVKDNPN---LVRIMEDVI 263
           IA L ++++  + N   L+ + ED I
Sbjct: 235 IACLSEFLILKDINEGKLIALFEDEI 260


>gi|126738862|ref|ZP_01754558.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126720043|gb|EBA16750.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 297

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 1/191 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ +R F   A +GS + AA +L L+Q ++SRQ++ LE ++G+ LF R  + L+LT+ G
Sbjct: 5   DWNHIRAFLKTAETGSLSAAARKLGLTQPTLSRQVAALEADLGLLLFERLGKSLSLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L   + +V   ++  Q+     +    G +RI  +      +L   L E  L  P + 
Sbjct: 65  RELLAHSQKVGKAVDGLQLAASGQTQSIEGTIRITASDVTTAFVLPPVLHELRLRAPRLT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+  N   D+    AD AIR  +P Q   LI R +       YAA  YL+    P S+
Sbjct: 125 IDLVAANDIRDLMRREADIAIRHVRPEQ-PELITRLVQEPTARFYAATSYLERRGRPRSL 183

Query: 184 QELDKHNLITF 194
            +   H+ ++F
Sbjct: 184 ADFSNHDFVSF 194


>gi|15889471|ref|NP_355152.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157339|gb|AAK87937.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 314

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 126/283 (44%), Gaps = 4/283 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V R GS + AA +L ++Q +  R I  LE  VG  LF R   GL  TE   
Sbjct: 9   WDFYRTFLSVLRDGSLSAAARELGITQPTAGRHIGALEEAVGFPLFIRSPHGLMPTEAAL 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                K  G +RI+ +  +G  +L   +     ++P ++I
Sbjct: 69  ALRPYAENLAATAAALMRAASGEVGKIEGTVRISASDIIGVEMLPPIVALMQEVHPRLEI 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +   D+    AD AIR+ +P Q  +++ R +    +  +A   YL     P +++
Sbjct: 129 ELSLSDTLEDLLRREADIAIRMTEP-QQDAIVMRYIGNFRLGFHATRDYLAKAGIPKAME 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GSGIA 242
           EL++H ++ F    P        + ++D  I +      ++ +  ++ Q  ++   +GI 
Sbjct: 188 ELNEHRMVGFDRKTPFIRAAIQRMRSLDPDIPDIEDISFEIRADSNLAQLAMIRASAGIG 247

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +    + + +P LV ++ D+  P  T +    E LK + + +A
Sbjct: 248 VCQIGLARKDPRLVHVLPDIDIPLHT-WVAMHENLKTSPRCRA 289


>gi|89108638|ref|AP_002418.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|90111335|ref|NP_416313.4| DNA-binding transcriptional activator for dmlA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|170081455|ref|YP_001730775.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|238901013|ref|YP_002926809.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|3915993|sp|P76250|DMLR_ECOLI RecName: Full=HTH-type transcriptional regulator DmlR; AltName:
           Full=D-malate degradation protein R
 gi|1736422|dbj|BAA15594.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|87081978|gb|AAC74869.2| DNA-binding transcriptional activator for dmlA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|169889290|gb|ACB02997.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238862273|gb|ACR64271.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|260449080|gb|ACX39502.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|315136440|dbj|BAJ43599.1| putative DNA-binding transcriptional regulator [Escherichia coli
           DH1]
          Length = 307

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 139/290 (47%), Gaps = 11/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALLALAKAYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 186

Query: 186 LDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L     +    +I +    F  W L   + P        L  N    + Q+C+ G GIAL
Sbjct: 187 LSALPCL----VIKERDHPFGVWQLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGIAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V +N    +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 243 RSWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|330820460|ref|YP_004349322.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327372455|gb|AEA63810.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 327

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 21/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA  L+ +  ++SR +S LE  +  +L  R  R L+LT  G   
Sbjct: 6   NMRVFARVVEAGSFTAAALSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLSLTPAGESY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++  + E   +  +PSG LR+ +   +GQ+ +   L  +    P++ ++L
Sbjct: 66  LLRCRQILADVDAAEEEASCAHERPSGLLRLHSYASIGQHYVLPALNAYREQRPEVSVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+  +L        A+P YL++   P +  EL
Sbjct: 126 TLSQRVPDLFDGSSDMAVVTASSLPDSELVSYRLGETFSILCASPAYLRSRGAPATPAEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
             H+ +T   L        +W L T +  + + R+S  +Q N+  S+      G GI +L
Sbjct: 186 AAHDCLT---LQTPAFPTHDWLLETREGQVEQIRVSGPVQTNTAESLAVAIGEGVGIGML 242

Query: 245 PDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y    +++D  +L+R++        ++Y  YP            R F+  K R W
Sbjct: 243 PLYAAIGLLRDG-SLMRVLPAHTLQRMSIYALYPS-----------RRFVDAKVRTW 287


>gi|300718641|ref|YP_003743444.1| temperature-dependent LysR-family regulator A [Erwinia billingiae
           Eb661]
 gi|299064477|emb|CAX61597.1| Putative temperature-dependent LysR-family regulator A [Erwinia
           billingiae Eb661]
          Length = 305

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 123/282 (43%), Gaps = 36/282 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA ++ +S S++S+ ++ LE E+ +KL  R  R L LTE G    
Sbjct: 7   MSVFARVVELGSFTAAANRMQMSVSAVSQTVAKLEDELQVKLLNRSTRSLGLTEAGKIYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  + +    +L   +  P G LRI ++  + QN+L     E L  YP + + L+
Sbjct: 67  QGCRRMMSEAQQVHEQLYAFNNTPVGTLRIGSSSTMAQNVLANMTAEMLREYPGLTVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+  D  D  IR+   +Q SSL  R+L ++ M   AA  YL     P       
Sbjct: 127 TGSPAPDLIADGLDLVIRV-GALQDSSLFSRRLGSMPMVVCAAKSYLTQHGTPEK----- 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-------------LQVNSYLSIMQY 234
                      P  + +F+WL    RP  +  ++                 N   +++++
Sbjct: 181 -----------PSDLGNFSWLEYSVRPDNDFELTSPEGVSIRLSLQGRFATNDSQTLIRW 229

Query: 235 CVLGSGIALLPDYIVKD--NPNLVRIM----EDVITPSFTVY 270
            V G+GIA +P   V D  N   V I+    +    P + VY
Sbjct: 230 LVSGTGIAHVPLMWVIDEINAGQVEILFAHYQSAPRPVYAVY 271


>gi|260869812|ref|YP_003236214.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O111:H- str. 11128]
 gi|257766168|dbj|BAI37663.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O111:H- str. 11128]
 gi|323178765|gb|EFZ64341.1| HTH-type transcriptional activator ttdR [Escherichia coli 1180]
          Length = 310

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|330817742|ref|YP_004361447.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327370135|gb|AEA61491.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 334

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 142/311 (45%), Gaps = 25/311 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q ++   L EFL  YP+
Sbjct: 65  AGQLFYQHCQAMLAEAQAAMNAVQQLRASPRGTVRVSVPVTLSQTMMSRLLPEFLRRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++Q+ + N+ ID+  D  D A+R+R +P ++++++ R L         +P  L     P
Sbjct: 125 VRVQVRVTNQVIDLFEDSIDIALRVRSEPPENANIVVRPLWRTEQMLVGSPSLLGQNAPP 184

Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSI 231
           L   +L +   +    GD        FN +A    P G       EPR   L     ++I
Sbjct: 185 LVPDDLVRFETLDTPSGD----GRHVFNLIA----PDGTRHVHEHEPR---LVTADLMTI 233

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +  + G GIA LP+ +         L  +M     P   +Y  +         +++F +
Sbjct: 234 REAVLDGVGIAALPEMMYGGALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRSFVD 293

Query: 289 FIFLKA-RDWK 298
           F+  K  RD++
Sbjct: 294 FLVEKLDRDYR 304


>gi|254521917|ref|ZP_05133972.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219719508|gb|EED38033.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 297

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R F  V  +GSFT AA  L +S++++++ +  LE  + ++L  R  R +++T  G+
Sbjct: 4   FEAMRAFARVVETGSFTRAALTLQVSRTTVTQLVQQLEAHLRLRLLNRTTRRVSVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   + +  +LE  +  L +++ +P G+LR+       +  L   L +F + YP+IQ+
Sbjct: 64  AYYPRIARLLAELEEVEGGLGDAATQPRGRLRVDVPGPYARLRLVPALPDFQVRYPEIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++++D+  D  DC IR   P    +L+ R L  + +  +A+P Y++   +P   +
Sbjct: 124 DIGVSDREVDVIADNVDCVIRGGTP-ADPALVARPLGALPIGFHASPGYVQRFGQPADPR 182

Query: 185 ELD--KHNLITF 194
            L+   H+++ F
Sbjct: 183 ALEGPDHHMVGF 194


>gi|167584731|ref|ZP_02377119.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 303

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 136/291 (46%), Gaps = 10/291 (3%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D L+  ++  R+   GSF+  A +  + Q ++S+ +S +E ++G++L  R    LT T++
Sbjct: 2   DSLQSMWLYTRAVELGSFSAVAREEKIGQPTMSKVVSAMEKQLGVRLLQRTTTSLTPTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +    ++         +++  + +P GKL ++  + LG+  L   + EFL  YP+I
Sbjct: 62  GRRFYERCKQMLETYADAVADVRGQAQRPVGKLTVSAPMGLGELRLNALVLEFLAQYPEI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L ++ ID+  +  D AIR+   +   + + R +        A P YLK       
Sbjct: 122 EVELNLTDRIIDLVEESIDVAIRIGNALPPDA-VARNVAWSPRVLVATPDYLKRAPRIRR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ + +         + +  A     I  P     +VN+ +++ +  + G G+ 
Sbjct: 181 PEDLLRHSFVGYARAAVGAQLELSKGAET---IVVPTNGRYRVNNSVALRECYLAGIGLG 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P ++V+   D   LVR++     P  +V+   P       + + F  F+
Sbjct: 238 SAPAWVVQDLIDAGQLVRVLPKWAIPPHSVHLITPSRRYPPLRARVFLQFM 288


>gi|92113463|ref|YP_573391.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796553|gb|ABE58692.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 297

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 134/283 (47%), Gaps = 9/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GSF   A +L LS + +S+QI+ LE  +G++L  R  R L LT +G +  
Sbjct: 7   MHIFRAVVDAGSFAGGARKLELSNAMVSKQIAKLEASLGVRLLTRTTRRLQLTAEGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  +L+  +  L E   +  GKLR++  +D G   L   L+ F   +P + + ++
Sbjct: 67  NGASRLLDELQELETGLGEQRGEVRGKLRLSAPLDFGVRALIPALQAFECRHPAVMLDVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D   +  D  +R+ + ++ SSLI R L+ +  H YAAP YL     P    +L 
Sbjct: 127 LEDRRVDPVAEDFDLVVRIGE-LEDSSLIARPLMDMPRHVYAAPSYLARHGTPTHPADLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +        E   W   V+      RI   +  N+  ++ +  + G G+   P 
Sbjct: 186 GHRCLHYS----LAREGQYWHFQVEGAPYRVRIRPVMACNNGRALTEAAIRGMGLVYKPA 241

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++ +   +   LVR+++       +V+  Y E      +L+A 
Sbjct: 242 FLGEPEVEAGRLVRVLDGFSVAPISVHLLYAEREFIPARLRAL 284


>gi|114327821|ref|YP_744978.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315995|gb|ABI62055.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 315

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 119/247 (48%), Gaps = 11/247 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  V R+G FT AA +    +S++S Q+  LE  +G++L  R  R   LT++G +
Sbjct: 32  DPIQTFVEVVRAGGFTAAARRTGTPRSTVSLQVRALEETLGVRLLKRSTRSFALTDEGQR 91

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   S     L     +LQ       G +R+    D    LL   +  F   +  ++ Q
Sbjct: 92  LYDKASGPVDVLARALDDLQAGDGVLGGLIRLTVPADFPTALLASAITSFTQAHTAVRFQ 151

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  N  +D+  D  D A+R+   P Q++  I+R+L+ I    YA+  +LK    P +I 
Sbjct: 152 IMWTNTVMDLVEDNIDIAVRVGANPAQTA--IERRLLDIEWAFYASASWLKRKGRPENIS 209

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E++  + I+   ++   +E  + L  V  P G      ++V+S+       + G G+ALL
Sbjct: 210 EVE--DFISPQPILRAYLEK-HVLGGVSLPTG-----AIEVDSHAMARDLMLNGFGVALL 261

Query: 245 PDYIVKD 251
           P  + +D
Sbjct: 262 PQGLCQD 268


>gi|325518242|gb|EGC97999.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 293

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 129/289 (44%), Gaps = 16/289 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AAE+L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 13  LLVFEAAARHESYTRAAEELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 73  VELSGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               ++D  +D  D AI +    +   L   +L    + A A+P         ++ Q   
Sbjct: 132 SRIGNVDFHLDDIDAAITVGAG-EWPGLRAHRLYNEFLIAIASPDATAGA--AVTPQWAT 188

Query: 188 KHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           K  L+          E F  N L      IG       ++ S+L  +Q    G GI L+P
Sbjct: 189 KQTLLGVTSNQQAWAEWFSHNRLDHRQMRIG----PSFELTSHL--IQAVRTGMGIGLVP 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +++D      LV I  D IT   + Y  YP A +    L AFR+++ 
Sbjct: 243 KVLMEDELGRGELVSI-GDAITSQRSYYLVYPPANETLPSLAAFRDWLL 290


>gi|315182229|gb|ADT89142.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 297

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 136/298 (45%), Gaps = 21/298 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA +GSFT AA+ L LS+  ++R +  +E  +  +L +R  R ++LT  G +  
Sbjct: 7   MRSFVEVANTGSFTKAADNLTLSRLQVTRHVQEIEDWLKQRLLHRTTRKVSLTAAGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +    +I   E S   +G +RI+  I L Q+LL   ++ F  L+P + I ++
Sbjct: 67  TRCEQILDQTAELEIRALEQSQSLTGSIRISAPIGLAQHLLLDTVEAFTELHPQVTIDIL 126

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++   +  D  D A+R  ++P    SLI R+L+ +     A+P YL+     +   +L
Sbjct: 127 ASDRLSQLVDDRVDVALRFTQQP--DESLIARRLIQVDTVVCASPQYLQTHDPIIEPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
            +HN           + +  W    D      R+S     + + I++   L   G+  LP
Sbjct: 185 SRHNCFVH-------LTNHTWDLVRDNQHFSVRVSGTVRANDMEILRSAALHHKGVVWLP 237

Query: 246 DYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +   NP      LV+++ D  +PS  ++  Y   L  + +    R FI   A  W+
Sbjct: 238 CDLA--NPCLRRGELVKVLADYHSPSSHLWAVY---LSRSYQTPLVRQFIDFVAERWQ 290


>gi|307313748|ref|ZP_07593366.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306899238|gb|EFN29875.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 297

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 20/295 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L+ F  VA +G  + AA +L +S+S +SR++  +E E+G++L  R  RG  LTE 
Sbjct: 1   MDIEDLQTFVAVADAGGVSAAARRLGISKSIVSRRLLRVEAELGVQLLARTTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118
           G     +T   +    + +I+  + ++ P+    G+LR+A  +  G       L +    
Sbjct: 61  G-----ITFRDHAARASAEIDAAKETILPTGELRGRLRVAMPLTFGPTHFAPVLADMARQ 115

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P + I     ++ +D+  +  DCAIR    +Q S+LI +++  IH    A+P Y+K   
Sbjct: 116 HPQLHIHTSYSDRFVDLIAEGFDCAIRGAY-LQDSNLIAKRVGPIHGKLVASPDYIKAHG 174

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++ EL  H  +  G    + M D + + TV +P G       + +S  ++      G
Sbjct: 175 SPETLDELVTHQALMQGTEAWQFM-DGDKIVTV-QPQGR-----FKADSATALAAAAAAG 227

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA LPD I      +  LV IM     P    Y   P     T K++A    +
Sbjct: 228 LGIAWLPDCITYGYVASGALVPIMTRYPVPPGAAYVVRPPGQHPTRKVRALTEML 282


>gi|241203242|ref|YP_002974338.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857132|gb|ACS54799.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 298

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 121/260 (46%), Gaps = 9/260 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  +GS + A   L  S + +S++I  LE  +G +L  R  R ++LTE G   +
Sbjct: 7   LEIFAKVVSTGSMSLAGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +  +   S +  G L+I+     G+  +  +LK+F+  +P++ I L+
Sbjct: 67  DRVLGILAGLEEAEFYISGRSAQMHGTLKISAPTSFGRMHIAPHLKDFMEAHPELAINLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  DI     D AIR+ + +  SSL+ R+L  +     A+P YL +  EP  I EL 
Sbjct: 127 LTDEFSDIVGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLASHGEPKHIDELK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H        +P    D   L   D  +       L  NS   I +  + G GIAL   +
Sbjct: 186 RHR------CLPAHNNDTWRLNGPDGALSLRPEGLLVTNSSEVIREAVIAGLGIALRSTW 239

Query: 248 IVKDNPNLVRIMEDVITPSF 267
            + +     R+++  + P++
Sbjct: 240 DIGEELKAGRLVQ--VLPAY 257


>gi|160896393|ref|YP_001561975.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361977|gb|ABX33590.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 297

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 135/297 (45%), Gaps = 14/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V   GS T AAEQL  + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKTTLDELQAFRAVIDCGSITAAAEQLGQTTSGISRSLSRLEKKLATTLVRRTTRSLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++      EV   L+  + EL      P+G LR+        + +   + EF  LYP
Sbjct: 61  EEGARFLARAREVLQALDAAEEELAARRQAPAGLLRVNAASPFMLHAIVPLVGEFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+     D AIR+ + ++ S+L  R L    +   A+P YL+     
Sbjct: 121 LITLELNTDDLHIDLLAQRTDIAIRIGE-LRDSTLHARLLCHSVLRVLASPAYLQAHGPV 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
            S+  L +H  I     +P      +W   +  P G  R      L  +S  ++ Q  + 
Sbjct: 180 ASVAALARHQRIGNSQ-VPGLN---HW--PLRTPEGGDRWDAAPQLTASSGETMRQLALA 233

Query: 238 GSGIALLPDYI-VKDNPN--LVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  L D++ V+D     LV+++  + +     ++  Y        ++ AF +F+
Sbjct: 234 GQGVVCLADFMTVRDRAQGELVQVLARETVQQRQPIHAVYYRNTALAARITAFLDFL 290


>gi|288962593|ref|YP_003452888.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914859|dbj|BAI76344.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 291

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 128/296 (43%), Gaps = 25/296 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR GSFT AA +L++SQ++ISR +  LE  +G  LF R A  L LTE+G  
Sbjct: 8   NGLRAFEAAARHGSFTAAAAELNVSQAAISRMVKLLEERLGFALFDRRANALVLTERGRA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    ++ +  +   ++E Q S+++    L +     +    L   L  F L +P+I+++
Sbjct: 68  LQPALTDAFDGI-ARRVE-QVSAMRAGPVLTVGMGATVAVRWLIPRLSGFHLDHPEIEVR 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +        +  D+  CA+ L    Q       +L +  +    AP      R P  +  
Sbjct: 126 IATGGAGEPMKDDW-TCAVLLGNG-QWPGYEAERLFSSRLQPVCAPRLAAALRRPADLAG 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
                +  +G+  P      +WLA V   + EP    L  +SY  ++Q  + G G+ L P
Sbjct: 184 TTLLRVSHWGEDWP------HWLAAVG--VAEPASKGLSFSSYAMVLQAAIDGVGVGLAP 235

Query: 246 DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL--KAFR--NFIFLKARDW 297
                    L+   +D+        F     + N+  L  +AFR  +  F   RDW
Sbjct: 236 ---------LLYSQDDIAAGRLATPFGLAVPMVNSWYLVYRAFRREDAGFASFRDW 282


>gi|167571992|ref|ZP_02364866.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 304

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 133/294 (45%), Gaps = 14/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +GIKLF R  RGLTLT  G  
Sbjct: 13  NALRTFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGIKLFERLPRGLTLTADGLA 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S+V   L     +  +  VK    + I+TT       L   L  F   +PDI I+
Sbjct: 73  YF---SDVQRALNLIG-DATDRLVKRRSSVTISTTPSFASRWLIPRLASFGDEHPDIDIR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D++      D  D AIR  KP     L+ R L  + ++A  +P  L +     S ++
Sbjct: 129 VIADSQFATFRSDGVDLAIRYGKPPFGKGLVTRFLFPVDIYAVCSPSLLTSPGALASPRD 188

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    DL P+ +        +D P   PR +     S L+I    + G G+AL+
Sbjct: 189 LAGHVLLHDAHDLWPEFLAAMPERVAID-PHRGPRFN----QSSLAI-DAAIAGHGVALV 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V    +   L R+ +  +  S   +  YP   +    +     ++   AR
Sbjct: 243 SDQLVGRDIEAGRLCRLFDFALPLSVGYHIVYPNEPRRPNDIATMEAWLIRHAR 296


>gi|116696405|ref|YP_841981.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530904|emb|CAJ97251.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 310

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 11/278 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W    +F  V   G FT  AE   + +SS S  ++ LE ++GI+LF R  R + +TE
Sbjct: 3   TIEWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLEGQLGIRLFERTTRRVRVTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L+   + ++ +L     E    S + SG LRI+T  ++G   L  +L   L  +P 
Sbjct: 63  RGQRLYERVAPLFAELHEISAEATSDSAEVSGLLRISTPYEVGSQHLSESLTRVLRAHPG 122

Query: 122 IQIQLIL--DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +++Q+ +  D  D+ I   Y    +     +  +S   +++V +    YAAP  +K    
Sbjct: 123 LRVQVDVSWDQPDL-IRHGYDLAFVMTDTALHDTSFASKRVVLVERAFYAAPALIKTRGL 181

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + Q+L      T G+   +  E       + R   EPRI C   N+ L  ++  + G 
Sbjct: 182 PRTPQDL--QGWPTLGNADDRHWEFLRDGVEIARQDVEPRI-CTH-NAELR-LKAALDGL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           G+  L    V+D      LVR++    +    VY   P
Sbjct: 237 GVTRLSPRFVQDAVGQGQLVRVLPGYASSPLKVYVLMP 274


>gi|116050205|ref|YP_790978.1| transcriptional regulator PtxR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891768|ref|YP_002440635.1| transcriptional regulator PtxR [Pseudomonas aeruginosa LESB58]
 gi|115585426|gb|ABJ11441.1| transcriptional regulator PtxR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218771994|emb|CAW27773.1| transcriptional regulator PtxR [Pseudomonas aeruginosa LESB58]
          Length = 312

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 13/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VA   SFT AAE L LS+S +S Q+  LE ++GI+L  R  R +TLT++G  
Sbjct: 14  NHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGEL 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V   +  +L+    ++++   +PSG+LRI    D  +  +      F+  +P +Q++
Sbjct: 74  LFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVE 133

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ D++  D+     D A+R+  P + S L   KL      A A P YL      L   +
Sbjct: 134 MLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPGYLAGLPPVLQPHD 192

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L +   I    L         W  T +R      +     L  N+ L++ +  + G+G++
Sbjct: 193 LARCEWIGHTRL------STPWTWTFERQRERATVQTRGRLLANNTLAVYRLVLDGAGVS 246

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +LP ++V        LVR++     P   +Y  YP A     +++AF
Sbjct: 247 VLPSFLVAREIARGRLVRLLPGWRLPQGGIYALYPSARYMPVRVRAF 293


>gi|332140669|ref|YP_004426407.1| putative transcriptional regulator, LysR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550691|gb|AEA97409.1| putative transcriptional regulator, LysR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 299

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 144/301 (47%), Gaps = 22/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S   + L  F  V  +GSF+ AA  L+   + +SR ++ LE  + + L  R  R L LT
Sbjct: 4   VSSKTEDLEAFLTVVDTGSFSSAANLLNQQVAKVSRAVTRLEDTLDVTLLNRTTRRLELT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   +  + LE  +  L+     PSGKLR+        + L   + +F   +P
Sbjct: 64  EEGELFLQYARDGLNVLEKGEEALRLLKRTPSGKLRVDAASPFVLHQLAPLVGDFREAFP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + +   +  ID+     D AIR+   +  S+L  R+L    +H  A+P YL+  + P
Sbjct: 124 DITLDITSHDSIIDLLEHKTDIAIRI-GDLSDSNLHARRLGKSKLHIVASPQYLE--KYP 180

Query: 181 LS-----IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           LS     I  L+KH LI F D  P   +   W    D  +       L+ +S  +I Q C
Sbjct: 181 LSENEGGISTLNKHKLIGFSD-SPSLNK---WPLKQDVNLQ----YSLRASSGETIRQLC 232

Query: 236 VLGSGIALLPDYIVKDNPN---LVRIM-EDVITPSF--TVYFCYPEALKNTGKLKAFRNF 289
           + G GIALL  ++V  + +   LV +  +D+++P+   +V   Y +    + ++ AF +F
Sbjct: 233 LAGQGIALLSHFMVHRDLSAGALVDVFSDDIVSPNRRESVQAVYYKNSAVSSRISAFLDF 292

Query: 290 I 290
           I
Sbjct: 293 I 293


>gi|187929830|ref|YP_001900317.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187726720|gb|ACD27885.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 302

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 138/309 (44%), Gaps = 37/309 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE 
Sbjct: 1   MEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEAGLGVRLMTRTTRQLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   + ++ +L     +   +S   +G LRIA   ++G   L   +   L  YP +
Sbjct: 61  GSHFYDDIAPLFERLREVHADTTAASETVAGTLRIAAPYEVGAQHLTEPVCRTLEKYPHL 120

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+ +  +  D+     D   + + + +  SSL+ R++V I    YA+P  L   R PL
Sbjct: 121 QIQVHISWEQPDLLASGFDIVFVMVDQVLPDSSLVARRVVLIPRGLYASPALLAE-RPPL 179

Query: 182 SIQELDKHNLITFGDLIP-KCM---EDFNWLATVDRPIGEPRISCLQV---------NSY 228
                      T  DL    C+   +D +W     RP+GEP +  ++V         N+ 
Sbjct: 180 K----------TPADLAGWPCLSGPDDASW---AFRPVGEPAVEPIEVPIQPRLQTLNAE 226

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +   +  V G G+A +   +         LVR++ D    +  VY     AL    KL  
Sbjct: 227 MR-ARAAVRGLGVARMARSVGDTEVAAGRLVRVLPDFELTALRVY-----ALMPARKLVP 280

Query: 286 FRNFIFLKA 294
            +  +FL A
Sbjct: 281 RKVRVFLDA 289


>gi|209550444|ref|YP_002282361.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536200|gb|ACI56135.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 298

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 126/296 (42%), Gaps = 19/296 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR GSFT A ++L ++Q+++S QI  LE  VG  LF R  R + LTE 
Sbjct: 7   FPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTET 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E +  L       ++S     G L I++T       L   L  F L +P I
Sbjct: 67  GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC---RE 179
            ++    +  ID + +  D  IR         L   +L+ +      +P   ++    +E
Sbjct: 124 AVRFQASSDIIDFTREQIDVGIRWGDG-NWPGLTLHRLMGLEFTPMLSPKLAESAGGIKE 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLG 238
           P  + +LD   L   GD+  K    F      D  +   PR    Q+ S        + G
Sbjct: 183 PRDLLKLD---LFDAGDIWWKQW--FEAAGVTDTDLDRRPRN---QLGSQAVEADAAIAG 234

Query: 239 SGIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G+A+L          L R+    E   +     +  YPE  +N  K+KAFRN+I 
Sbjct: 235 HGVAILHPAFYAAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWIL 290


>gi|326794141|ref|YP_004311961.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326544905|gb|ADZ90125.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 299

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 94/190 (49%), Gaps = 2/190 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+VF      GSF+ AA++L  + +  S  I  LE  VG +LF R  R + L+E G +
Sbjct: 5   DDLKVFIYSVEEGSFSAAAKRLGSTPALASSAIQRLEKAVGARLFIRSTRTIRLSEDGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      LE  + EL       SG LRI+   DLG+N+L   L++F   YPD+ I 
Sbjct: 65  YLAHARAAIDALEAGERELNSKRDDISGTLRISAPSDLGRNVLLPWLQDFQDTYPDLSID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQ 184
           L L +   D+  D +D  IR    +  SSLI   LV  +     A+P YL+    P SI+
Sbjct: 125 LRLGDHISDLYKDTSDVGIRY-GVLGDSSLIALPLVPDNRRIVCASPVYLEQYGTPASIE 183

Query: 185 ELDKHNLITF 194
            L +HN + +
Sbjct: 184 ALRQHNCLLY 193


>gi|296101458|ref|YP_003611604.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055917|gb|ADF60655.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 299

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 116/260 (44%), Gaps = 20/260 (7%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           FD+   + VF  V   GSFT AA  L  + S +SR +S LE  +G +L  R  R + LTE
Sbjct: 5   FDYLGDVEVFITVVEHGSFTAAAVVLSTTPSVLSRAVSRLEARLGRQLLQRTTRRVGLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G          +  L+  + E +      +G++R++     G   L   L  F   YP 
Sbjct: 65  AGRVYLEQARSAFALLDDAEREGRGQEGDLTGRVRMSVPTTYGHYRLPPLLARFAQHYPR 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L + N+++D+  +  D AIRL + +  S L+ RKL    +   A+P YL     P 
Sbjct: 125 VQVELNITNRNVDLIAEGFDLAIRLGQ-LPDSGLVARKLEDAALLLVASPDYLHRMGSPQ 183

Query: 182 SIQELDKHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           +++EL +H  + F     G + P        D +WL      I E           L ++
Sbjct: 184 TLEELHRHTCLPFIMPRTGRIAPWVFRDEERDIDWLPGSTIEISE---------DVLGVV 234

Query: 233 QYCVLGSGIALLPDYIVKDN 252
                G GI    ++IV+D 
Sbjct: 235 SLAEQGMGICQSYEFIVRDR 254


>gi|78061372|ref|YP_371280.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969257|gb|ABB10636.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 297

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 3/239 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT AA QL +SQS++S  I  LET +G++L  R  R +  TE G +L 
Sbjct: 9   LLAFIAVARERSFTRAAAQLGVSQSALSHTIRSLETRLGVRLLTRTTRSVAPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +  + ++E     L E   +P+G +RI  T  + + LL   L   L  Y D++++ +
Sbjct: 69  LNLAPRFDEIEAELTALAELRDQPAGTVRINATDFVIRTLLWPKLAPVLRDYRDLKVEFV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    DI  +  D  +RL   +    +  R    + M    AP Y      P+S Q+L 
Sbjct: 129 NDYGLSDIVAERFDVGVRLGDQVAKDMIAVRISADMKMAIVGAPAYFAERARPVSPQDLV 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H+ I     +P     + W LA  D  +       +  N     +   + G G+A +P
Sbjct: 189 AHDCINL--RLPTHGALYAWELARGDDTLQVRVDGQVTFNGTYETLDAALAGYGLAYVP 245


>gi|115359273|ref|YP_776411.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284561|gb|ABI90077.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 312

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 120/270 (44%), Gaps = 7/270 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT AA +L +SQS++S  I  LET +G++L  R  R +  TE G +L 
Sbjct: 22  LLAFIAVARERSFTRAAARLGVSQSALSHTIRALETRLGVRLLTRTTRSVAPTEAGERLL 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +  + ++E     L E   KP+G +RI  T  + + LL   L   L  Y D++++ +
Sbjct: 82  QNLAPRFDEIEDELSALAELRDKPAGTVRINATDYVIRTLLWPRLSPILRDYRDLKVEFV 141

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    DI     D  +RL   +    +  R    + M    AP Y      P + Q+L 
Sbjct: 142 TDYGLSDIVAQRFDIGVRLGDQVAKDMIAVRISPDLKMAIVGAPAYFAEREPPATPQDLV 201

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ I     +P     + W LA  D  +       +  N    ++   + G G+A +P 
Sbjct: 202 AHDCINL--RLPTHGALYAWELARGDDTLQVRVDGQVTFNGTYEMLDAALAGYGLAYVPA 259

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +     +   LV +++D   P+F  +  Y
Sbjct: 260 ELAAPHVEAGRLVSVLDD-WCPTFPGHHLY 288


>gi|328470190|gb|EGF41101.1| transcriptional regulator LysR family protein [Vibrio
           parahaemolyticus 10329]
          Length = 293

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 135/274 (49%), Gaps = 11/274 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F  V + GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT +G  
Sbjct: 4   DDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNKGDA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   +V   L++   +    S++  GK+++    +  +  LQ  L EF   YP +++ 
Sbjct: 64  YYQDLQKVLTLLDSANQQASNESIEVRGKIKLGLLPETYEP-LQPILFEFQDQYPQVELD 122

Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++N  ID+     D A+     +  S ++ RK++T+     A+P+YL+    P +++
Sbjct: 123 IRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPATLE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  I F    P    D  W         +P++     N+   I    VL  GI+ +
Sbjct: 182 ELSDHQCICFR--WPNGNVDNLWHFQEQNVALKPKLIS---NNIGFIKSSTVLDRGISYI 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           P  +VK   ++  LV+++        T +  YP+
Sbjct: 237 PKLLVKNELESGALVQVLSQYAVTEETGWLLYPQ 270


>gi|317402802|gb|EFV83346.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 306

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 21/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F V AR  SFT AA++L ++Q ++S+Q+  LE  VG++LF R  +GL LTE G    
Sbjct: 11  LQAFEVAARHSSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLRIRQGLVLTEAGRSYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++E   +EL     +  G L +      G   L   L  F+ L PDI ++ +
Sbjct: 71  TKIQAGLGQIEAATVELIAHQGQ-GGTLNLTCMPTFGARWLIPRLTAFMRLRPDIHVEFL 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLK-NCREPLS 182
              +  D S    D A+R  + I   S    ++ R+++ +      +P  +   C  P  
Sbjct: 130 PHRQGYDFSSPELDAAVRFGEGIWPGSGADYIVGREILPV-----CSPRLIPGGCSVP-- 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  + L+     +    + F       R      +   + + Y  + Q    G G+A
Sbjct: 183 -ADLLAYPLLHHTSALEGWRDWFEQAGCDTR----RSLEGARFDQYALLSQAAAAGFGVA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+P  +++D   +  L   ++  I      Y CYPE   N   L+AFR ++   +R
Sbjct: 238 LIPRCLIEDELRDGKLAVAIQLPIRARMGYYLCYPEQKANLPTLQAFRTWLMEVSR 293


>gi|188535171|ref|YP_001908968.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis
           Et1/99]
 gi|188030213|emb|CAO98099.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis
           Et1/99]
          Length = 302

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 120/242 (49%), Gaps = 4/242 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  + S+T AA+ L L++SS+S++IS LE  +G KL  R  R + +TE G   +  
Sbjct: 12  IFAKVVETLSYTEAAKTLGLAKSSVSKEISALEVRLGAKLLQRTTRRIQVTEVGMTYYHY 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              + +++++  + +++   +P+G LR+A  +  G   +   L  F+     + + L L 
Sbjct: 72  CYRILNEVKSADLFIRQFHEEPTGSLRVAAPVTFGCQCIVPALNRFVAGNIHVSVDLDLT 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ ++ + D+ D AI + + +       R L+ I    YAAP YL N     S  +L +H
Sbjct: 132 DRPVNFADDHIDLAIAITRDLPDHRH-YRPLMDIAWGLYAAPDYLLNRPAVTSPDDLARH 190

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I F    P       +     +   E R S  + N+ ++++   V  +GIA LP+YI 
Sbjct: 191 EFILFRG--PAHTISLPFRKEKQKKDIEVR-SRFRANNSIALLNSAVAQTGIAYLPNYIA 247

Query: 250 KD 251
           ++
Sbjct: 248 RE 249


>gi|171318776|ref|ZP_02907915.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171096008|gb|EDT40939.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 301

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 119/253 (47%), Gaps = 26/253 (10%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +  +S  I  LE +VG+ L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMTSFTRAAESLGIQKGRVSMVIRKLERDVGVALLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++   ++  Q     +  +  G+LR+    +L ++++   L + +  +P+++
Sbjct: 63  RAFYSRARDLLADVQELQSMFSGNGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  PI   +LI R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRL-GPIADDTLIARPLGKLRMTNAASPSYLARHGIPRTL 181

Query: 184 QELDK------HNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIM 232
            +L        H  +T G   P       W    + P G+     P  S +QVN   S+ 
Sbjct: 182 DDLRSQGHRMVHYTLTLGARHP------GW----EYPNGDGYASLPLPSAMQVN---SVQ 228

Query: 233 QYCVLG-SGIALL 244
            Y   G +GI L+
Sbjct: 229 TYHAAGLAGIGLI 241


>gi|254227300|ref|ZP_04920732.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262396433|ref|YP_003288286.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151939912|gb|EDN58738.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262340027|gb|ACY53821.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 307

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G  
Sbjct: 5   NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I+
Sbjct: 65  FLDKTTQALATLQEGLEQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+     D AIR  +P  S+ ++     +      A+P Y+    E  S  +
Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGSNERILCASPEYVATHPELTSPAD 184

Query: 186 LDKHNLITF 194
           L +HN + +
Sbjct: 185 LTQHNCLCY 193


>gi|312960818|ref|ZP_07775323.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311284476|gb|EFQ63052.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 300

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 17/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   A +GS + AA  L L+ ++ S  +  LET +G +L  R  R + LTE+G    
Sbjct: 7   LEVFVRTADTGSLSAAARGLGLTPAAASIALKRLETRLGTRLLARSTRSMRLTEEGKHYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E    L   +  L++     +G L++A   D G+N++ G L EF   +P+I++QL+
Sbjct: 67  DSVREALAALAEGEQALKQQGQGLTGLLQLAAPSDFGRNVVLGWLDEFKREHPNIRLQLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQEL 186
           L++ + D+  D  D A+R   P + SSL+   +V  H   A A+P YL     P +  +L
Sbjct: 127 LNDSNADLFRDTVDIALRFGIP-RDSSLVALPVVPGHQRIACASPDYLLRHGTPTTPAQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGI 241
            +H  + +   + +   +  W       + E  ++      YLS     + ++ + G GI
Sbjct: 186 AQHTTLRY---MRQGRANSTWFFCQGNDLQEVEVT----GDYLSDDGEIVRRWALAGHGI 238

Query: 242 ALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A   +  I +D     LV+++ D            P  L+ + ++K    F+
Sbjct: 239 AYKANLDIARDLKAGRLVQLLPDWQGEPTPFNLMCPHRLQVSERVKVLHRFL 290


>gi|222080941|ref|YP_002540304.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725620|gb|ACM28709.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 295

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 16/252 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++ SF  AAE + +  S++SR+IS LE  +G++L +R  R + LTE G  
Sbjct: 5   NDMAMFVEVVKARSFRRAAETIGMPNSTLSRRISSLEKAIGLRLLHRTTRRIELTEAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      +L E    PSG LR +  +D     L   + EF   YPDI  +
Sbjct: 65  YFERCKRIVDEARLAHEQLGEILTPPSGVLRASLPVDFALIYLAPLIAEFARRYPDIDFE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L  + +D+ ++  D AIR+      S+L+  +L  +  + YA+P YL+   EP    +
Sbjct: 125 FDLTPRRVDLVVEPFDVAIRMGGS-PDSNLMSWELACLPRYLYASPRYLELFGEPNEPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +H  + F        +   W       TV+   G       ++N    I +   L  G
Sbjct: 184 LIRHESLQF------PAQSGVWTLNHGHETVEVAAG----GRFRLNGVSMIRRLATLDLG 233

Query: 241 IALLPDYIVKDN 252
           IA+L + IV D 
Sbjct: 234 IAMLAEEIVADE 245


>gi|239813250|ref|YP_002942160.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239799827|gb|ACS16894.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 298

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 130/257 (50%), Gaps = 12/257 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  GSF+ AA+ L ++ S+ SRQ+  LE E+G +L  R  R L LTE G +     
Sbjct: 4   FLRVAELGSFSAAADLLGMTPSAASRQVKRLEKEIGAQLIQRTTRQLRLTEPGVEALARC 63

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E+    +      Q  S KPSG +RI+      + +L  ++ +FL  +P++ +QLI+++
Sbjct: 64  RELVLAAQGAMDVAQRFSKKPSGLVRISAPKAFARRVLHPHILDFLQRHPEVDVQLIVED 123

Query: 131 KDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +DID   +  D  +RL  KP +   L+ R+L+ +     A+P YL         ++L  H
Sbjct: 124 RDIDPIREGVDLVVRLTTKPPE--GLVARQLMPVAHILCASPRYLAQGAAIAHPRDLLAH 181

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDY 247
           + ++ G+       D +W     D    E  +    V+++  + ++  + G G+A +P +
Sbjct: 182 SCLSLGEH----ERDNHWCFRKGDEDEAEVVVRGRYVSNHSEVRLEAALAGLGVACVPAF 237

Query: 248 IVKD---NPNLVRIMED 261
           + +    + +++R++ D
Sbjct: 238 MAQQALKDGSVMRVLAD 254


>gi|163740313|ref|ZP_02147707.1| probable transcriptional regulator [Phaeobacter gallaeciensis 2.10]
 gi|161386171|gb|EDQ10546.1| probable transcriptional regulator [Phaeobacter gallaeciensis 2.10]
          Length = 292

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 123/259 (47%), Gaps = 19/259 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F    R  SF  AA++L ++Q ++++Q+  LE  +G+ LF R  +GL  T  G  
Sbjct: 8   NSLRAFDAAGRRLSFRAAADELGVTQGAVAQQVRQLEAHLGVVLFERVPKGLAFTSVGRS 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   ++V+  L +   EL+        K+ I+ T       L  NL +F   +P+I ++
Sbjct: 68  FHNRVADVFADLRSATAELKPEP----NKVLISVTPSFAAKWLIPNLPDFTAAHPNIDLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR---EPLS 182
           ++   K      D  D A+R   P   +SL    L    + A AAP   ++     EP +
Sbjct: 124 IMATEKVSSFQSDGIDLAVRQGSPPFGASLDVTLLFKQTLIAVAAPSITRDAPHSFEPET 183

Query: 183 IQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +L K H+     DL P      ++LA +D P   PR   L+++     +   + G G+
Sbjct: 184 LSKLPKIHDA---HDLWP------SYLAHLDVPDQSPR--GLRLSQTSLAVDAAIAGQGV 232

Query: 242 ALLPDYIVKDNPNLVRIME 260
           AL+  ++V D+  + R++E
Sbjct: 233 ALVSRFLVADDLEVGRLVE 251


>gi|117620686|ref|YP_856142.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562093|gb|ABK39041.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 300

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 136/292 (46%), Gaps = 21/292 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V    SFT AA QL +S +  S+ +  LE  +  +L  R  R +  TE G   +
Sbjct: 7   MRTFIKVVECQSFTKAANQLGISVAMTSKLMQQLEESLSTRLLSRTTRQVNPTEAGQFYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + +  +  +LE T  +L  ++ +P G L+++  +D G   L   L  F   YPD+++++ 
Sbjct: 67  QRSQALLAELEETHSQLTRNNQQPQGTLKLSVPMDFGYLHLSPALPLFRERYPDLKLEIE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ + +  +  D A+R+   +  SSL+ + L  + +   A+P YL     P + ++L 
Sbjct: 127 YSDRRVALVEEGFDLALRIGN-LPDSSLVAKPLAMMRLEVCASPAYLARRGTPNTPEDLK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +H+ + +    P      +W+   D      RP G      L+ N+ +++ +      GI
Sbjct: 186 QHDCLLYTLTQP------DWVFKRDGEQLSVRPQGP-----LRANNGVALTRAACDHQGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P +IV D   +  LV ++ +       +Y  YP     + K++ F  F+
Sbjct: 235 ILQPTFIVGDALRSGALVSLLPEWEKGQVGLYALYPHRRFVSAKVRCFIEFV 286


>gi|330949858|gb|EGH50118.1| LysR family transcriptional regulator [Pseudomonas syringae Cit 7]
          Length = 302

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 9/273 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +GSFT AAE+L+L+ S++S+ ++ LE+ +G++LF R  R L LTE+G+  H
Sbjct: 10  IETFVAVANAGSFTAAAERLNLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGAAYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   +   LE  +  L     +P+G+LRI      G+      +  F   +  ++ ++ 
Sbjct: 70  TVCVRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRPRIT 129

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +DI  +  D A+R+  P +  + +  R L T  +   AAP YL+    P + ++L
Sbjct: 130 FTDRFVDILEEGIDLAVRIGGPRVWPAGVAHRYLGTERVIFCAAPAYLQRYGTPHTFEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
             H  I FG           WL   ++   E R   + L + +  + +       GIA L
Sbjct: 190 ASHACILFGR---GDGSTSPWLFVDEQGQREARAVEARLVIGNAEAQVAAVTSAWGIAQL 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
             +++++      LV I+  + T    ++  +P
Sbjct: 247 ATWLIREQLQRGELVEILPQLATDGLALHLAWP 279


>gi|323698645|ref|ZP_08110557.1| transcriptional regulator, LysR family [Desulfovibrio sp. ND132]
 gi|323458577|gb|EGB14442.1| transcriptional regulator, LysR family [Desulfovibrio desulfuricans
           ND132]
          Length = 297

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL----HRV 69
           VAR  SFT AAE L +  S++SR+I  LE  +G+ LFYR  R +  T+ G+ L      +
Sbjct: 15  VARRKSFTKAAETLGMGVSTLSRRIKLLEERMGVLLFYRDTRNVEPTDNGAYLLDRCGYI 74

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQIQLIL 128
             EV +  ++  + +Q    KP+G +RI   +DL  +   +  L +F + +PDIQ+ L  
Sbjct: 75  LDEVQNAYDSVVLNMQ----KPAGLIRICMFLDLYDDRPFKDALMDFAVKWPDIQMDLTF 130

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
               +D+  D  D A  L  P  +  LI RKL+TI    YA+P  L+    PL   +L +
Sbjct: 131 VEHPVDMRTDPFDVAF-LIGPSIALPLIARKLLTIEPFLYASPALLERYSMPLEPGDLRR 189

Query: 189 HNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              I    FG+  P  M D     TV+    +P+ S     S     ++ + G G+ALL
Sbjct: 190 LPCIVLQRFGNRWP--MHDGTRQVTVEV---QPQYS---FGSVEMCREFALAGHGVALL 240


>gi|298290356|ref|YP_003692295.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296926867|gb|ADH87676.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 304

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 132/291 (45%), Gaps = 14/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F      GS T AA  L ++Q ++++ +  LE  VG +L  R AR +  T QG+ L+
Sbjct: 7   LRAFVRTVERGSVTAAARDLAVTQPAVTKHLRNLERHVGARLLERSARLVRPTPQGAALY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +      +++    ++       G LRI     LG   L G + EF   +P + + LI
Sbjct: 67  ETSRSALASIDSALEGVRRDMGAIEGTLRIHAPACLGARRLHGIVMEFQAAHPGVNVDLI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +D+  +  D A++  +P +   L+ R+L  +     AAP +L  C    +++ L 
Sbjct: 127 LENRSVDLVYENLDLAVKYGRP-EGQDLVIRRLGLVRRVLVAAPSFLARCGPVDTLERLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIAL 243
           + +++T   ++     D   L     P+GE    P    L+ N+   +++  +LG G A 
Sbjct: 186 EVDIVTTPAVV--SPRDMLMLQRAGTPLGESIEVPVRPVLRTNAA-EVIEQTLLG-GHAA 241

Query: 244 LPD---YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            P    +  +D     LVR++ +        +  YP        ++AF +F
Sbjct: 242 GPVQVLFAARDLAAGRLVRLLPEYEVRPSEAFLAYPSVRFMRPVVRAFTDF 292


>gi|77360330|ref|YP_339905.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76875241|emb|CAI86462.1| Transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 317

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 120/276 (43%), Gaps = 17/276 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  V   GSFT A + + LS + ISR +S LE  +  +L  R  R + LT++G 
Sbjct: 31  WDGIDEFIAVGEEGSFTAAGKAIGLSVAHISRHVSALEQRLNTQLLTRTTRKVVLTKEGE 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + H ++     L +    P GK+ +   +  G++ +   +  F+  +PD+++
Sbjct: 91  VFLHQIKHLQHAMDDATQSLAQQQSTPKGKINLTAPVMYGESFIMPIVHNFMHDHPDVEV 150

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+  ++     D AIRL   ++ SSL  R+L         AP YL    EP ++ 
Sbjct: 151 VATLSNEQENLLEGGFDLAIRLGH-LKDSSLKARRLSARRFIMCCAPDYLTRFGEPHTLG 209

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241
           EL  H          +C+   +    V+    E  I     LQ NS  +++     G GI
Sbjct: 210 ELINH----------QCLVGNSRYWRVNEGGREKHIKIAGRLQCNSGWALVDGAKKGLGI 259

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
             LP+Y +++      LV I+         V+  YP
Sbjct: 260 IQLPNYYIENELKTGQLVPILTSYQPLQEGVWGVYP 295


>gi|15597454|ref|NP_250948.1| transcriptional regulator PtxR [Pseudomonas aeruginosa PAO1]
 gi|107101704|ref|ZP_01365622.1| hypothetical protein PaerPA_01002748 [Pseudomonas aeruginosa PACS2]
 gi|254235274|ref|ZP_04928597.1| transcriptional regulator PtxR [Pseudomonas aeruginosa C3719]
 gi|313110849|ref|ZP_07796697.1| transcriptional regulator PtxR [Pseudomonas aeruginosa 39016]
 gi|17380253|sp|P72131|PTXR_PSEAE RecName: Full=HTH-type transcriptional regulator ptxR
 gi|9948285|gb|AAG05646.1|AE004651_8 transcriptional regulator PtxR [Pseudomonas aeruginosa PAO1]
 gi|13655591|gb|AAC26481.3| PtxR [Pseudomonas aeruginosa PAO1]
 gi|126167205|gb|EAZ52716.1| transcriptional regulator PtxR [Pseudomonas aeruginosa C3719]
 gi|310883199|gb|EFQ41793.1| transcriptional regulator PtxR [Pseudomonas aeruginosa 39016]
          Length = 312

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 13/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VA   SFT AAE L LS+S +S Q+  LE ++GI+L  R  R +TLT++G  
Sbjct: 14  NHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGEL 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V   +  +L+    ++++   +PSG+LRI    D  +  +      F+  +P +Q++
Sbjct: 74  LFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVE 133

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ D++  D+     D A+R+  P + S L   KL      A A P YL      L   +
Sbjct: 134 MLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPGYLAGLPPVLQPHD 192

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L +   I    L         W  T +R      +     L  N+ L++ +  + G+G++
Sbjct: 193 LARCEWIGHTRL------STPWTWTFERQRERATVQTRGRLLANNTLAVYRLVLDGAGVS 246

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +LP ++V        LVR++     P   +Y  YP A     +++AF
Sbjct: 247 VLPSFLVAREIARGRLVRLLPGWRLPQGGIYALYPSARYMPVRVRAF 293


>gi|313498457|gb|ADR59823.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 306

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 8/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +   GSF  A  QL    + +S+++S LET +GI+L  R  R L  T++G +
Sbjct: 10  DELATLLALYEQGSFAAAGRQLERHPTVLSKRLSALETRLGIRLVERSTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E    +   + E  E +    G+LR+A    +G+  L G L +F+L YP + ++
Sbjct: 70  LVAKVLEASRLIAEAEEEAAEGAATVRGRLRLALPAAMGRRWLSGMLADFVLAYPQVIVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++ +D+  +  D AIR+ + +  + L+  KL        A+P YL    EP   ++
Sbjct: 130 TEYADRFVDLIGEGFDAAIRIGE-LADNRLVASKLCDHVRILCASPQYLARHGEPAQPED 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F  L  +   ++  L +  R         L+ N   ++++    G GI    
Sbjct: 189 LAAHNCLGFNGL--RSFPEWR-LMSDTRQTSVKVAGSLRSNDNEALLEAARRGVGILAGG 245

Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D+++ ++     LVR++    +  +  +Y   P A  NT  +  F+ ++
Sbjct: 246 DWLMCEDLASGCLVRVLAQWQLDKAAGIYLVRPTARLNTAAMGVFKAWL 294


>gi|269966161|ref|ZP_06180251.1| Transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|269829308|gb|EEZ83552.1| Transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 295

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 29/305 (9%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS+++  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVKSYIRVVEEGSFNAAARKLNTTSSAISKRVQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYQRAKSQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQL--ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           I +QL   L  +  ++S+D      R  + + S S     L       YAAP YLK    
Sbjct: 121 ITLQLTTTLPGQLPELSLDL--FISRELEQLNSLSFKATALFEHKAQFYAAPSYLKKYGT 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-- 237
           P  +++L +HN++ +G+                R I   R   + ++   +      L  
Sbjct: 179 PQCVEDLTEHNVLIWGE-------------KPSREIKTNRGKRISLSGNFATTNPEALFH 225

Query: 238 ----GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G GI +  + ++KD+     LV I+ D+      VY  YP+      + K F +  
Sbjct: 226 GAKRGMGILMTNNVMIKDDLKSGALVPILPDITADKAIVYAYYPKLDYQHTRTKLFLD-- 283

Query: 291 FLKAR 295
           +LK+R
Sbjct: 284 YLKSR 288


>gi|260433865|ref|ZP_05787836.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417693|gb|EEX10952.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 300

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +WD +RVF  VAR  S + A  +L +  +++ R+I+ LET +   LF +  +G  LT
Sbjct: 1   MTPNWDDMRVFLAVAREESLSSAGRRLKIDPATVGRRIARLETALKAPLFTKSPQGYLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L          +      +  S+   SG++RI         LL           P
Sbjct: 61  SAGERLFEHAQSAEEAMRAAAGAMDGSTKALSGQIRIGAPDGSANYLLPQVCARISDANP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ IQ++   + I++S   AD A+ +  P     L+Q K+    +H  A   YL      
Sbjct: 121 DLDIQILALPRIINLSRREADMALTVSAPTAGKLLVQ-KVSDYCLHMVATEDYLARHAPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            ++ +L  H +I +   IP  + D   ++L      IG  R++ L  NS    ++   LG
Sbjct: 180 RTLNDLRGHRMIGY---IPDMIFDRELDYL----NDIGIDRVA-LASNSVSVQLRQASLG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +G+ +  D+ +  +P L +I+ D ++ + + Y    +  +   +L  F   +    RD
Sbjct: 232 TGVCVAHDFTLPFHPGLRKILTDQVSLTRSFYLVRHQGDQRNERLNRFAKALSQGIRD 289


>gi|197337480|ref|YP_002158016.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314732|gb|ACH64181.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 310

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 128/267 (47%), Gaps = 27/267 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA++L ++ S++S+ I+ LE  + +KLF R  R L +TE G K++
Sbjct: 13  LATFIVVVNEGSFTAAAKKLGVTPSALSKLITRLENALSVKLFERTTRSLLITESGKKIY 72

Query: 68  RVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +   +    +E  Q  +  SS +   PSG L +A        +LQ  +  FL  YP IQ+
Sbjct: 73  Q---QSVIMIEAAQQAVDISSSEHTVPSGSLTVAAPKAFLTIVLQPLITPFLTKYPKIQL 129

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L   + DID+     D   RL  KP +   L+ +++  +++   A+P YL+    P   
Sbjct: 130 KLRASDGDIDMIAQGIDVVFRLTDKPTE--GLVMKEIGKVNLSLCASPTYLEERGIPHLP 187

Query: 184 QELDKHNLITFGDLIPKCMEDF------NWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           QEL  H+ +  G+     + +F      + +A   R           VN     +     
Sbjct: 188 QELANHDCLFLGETTTDHIWEFVKGTESHVIAVSGR---------YAVNHSQMRLNGVKD 238

Query: 238 GSGIALLPDYIVKD---NPNLVRIMED 261
           G GI + PD+++K+   N  ++ ++ D
Sbjct: 239 GFGIGIFPDFVIKEALANNEVISVLSD 265


>gi|167567601|ref|ZP_02360517.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167569115|ref|ZP_02361989.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 320

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 2/190 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ I  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFIQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E    +  P G++RI + +  G+  L   L EF   YP+I +
Sbjct: 67  AFYERCVRILEDIADAEREATRGA-SPQGRVRINSHVPFGKRHLMPLLPEFQRRYPEITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D+  D +D AIR   P   S L+ RKL    M    +P Y +    P +  
Sbjct: 126 DIVLSDAVVDLLDDRSDIAIRSGAP-DDSRLVMRKLGGSRMVVVGSPAYFERWGVPETPD 184

Query: 185 ELDKHNLITF 194
           +LD+H+ I  
Sbjct: 185 DLDRHHCIGL 194


>gi|91223158|ref|ZP_01258424.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91191971|gb|EAS78234.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 307

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G  
Sbjct: 5   NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I+
Sbjct: 65  FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+     D AIR  +P  S+ ++     +      A+P Y+    E  S  +
Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGSNERILCASPEYVATHPELASPAD 184

Query: 186 LDKHNLITF 194
           L +HN + +
Sbjct: 185 LTQHNCLCY 193


>gi|300313187|ref|YP_003777279.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300075972|gb|ADJ65371.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 136/290 (46%), Gaps = 18/290 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A +GSF+ AA QL L+ +++ + ++ LE+ +G++LF+R  R L+LTE G +  +  
Sbjct: 10  FVAAAHAGSFSAAARQLGLTSAAVGKNVARLESSLGVRLFHRSTRKLSLTEAGERFLQEV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 + +    L  +  +P+G L+++     G+  +   L EFL  YP IQ     +N
Sbjct: 70  GGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPGIQPDWHFEN 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELDKH 189
           + +D+  +  D AI     + S  ++ R+L   H    A+P YL +   PL S  +L +H
Sbjct: 130 RPVDLISEGFDAAIAGGTEL-SPGVVARELAPAHRVLLASPAYL-DAHPPLHSPADLAEH 187

Query: 190 NLITF-----GDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
             I       G + P  + D +       P+  + R++    N+   + +   LG  +  
Sbjct: 188 AGILIRSPQTGRVRPFSLRDRSGQ---QAPVTLQQRMTMSDANAACEVAE-AGLGITLVA 243

Query: 244 LPDYIVK-DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P  +   +   LVR++ D  V T   ++YF     L    K + F +F+
Sbjct: 244 MPHALPYLEGGTLVRVLPDWYVDTGMLSLYFTAARLLP--AKTRVFVDFV 291


>gi|28901444|ref|NP_801099.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308094987|ref|ZP_05892639.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308095347|ref|ZP_05905163.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308125561|ref|ZP_05775866.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|28809991|dbj|BAC62932.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085408|gb|EFO35103.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092638|gb|EFO42333.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308112321|gb|EFO49861.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 307

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G  
Sbjct: 5   NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I+
Sbjct: 65  FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+     D AIR  +P  S+ ++     +      A+P Y+    E  S  +
Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGSNERILCASPEYVATHPELTSPAD 184

Query: 186 LDKHNLITF 194
           L +HN + +
Sbjct: 185 LTQHNCLCY 193


>gi|260775781|ref|ZP_05884677.1| transcription regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608197|gb|EEX34366.1| transcription regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 299

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 131/288 (45%), Gaps = 13/288 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +SFDW++ R F   A  GS + AA  L+++Q ++SRQ+S LE E+G+ LF R A+ LTLT
Sbjct: 6   ISFDWNRTRAFLATAELGSLSAAAHSLNVTQPTLSRQVSALEQELGVALFERSAQKLTLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L  +  E+        +     S   +G + ++         L   L +   + P
Sbjct: 66  RSGIELLHIAREMGDVAHKFSMVASGQSEDLNGVVALSVCQLDAMYRLPPILAKLRRVEP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L++ N+  D+    AD A+R  +P Q  SLI +KL    +  Y    YL    E 
Sbjct: 126 KLSIDLVVTNQVSDLKRRDADIALRSVQPTQ-PSLIAKKLGEERVSLYGTRAYLTPFLEA 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            SI+++ +  +I FG   P  M  F+   W       + E     L  +   + +  C  
Sbjct: 185 QSIEDVPELQIIGFGHNGP-IMTQFSHQGW------SLNEKNFK-LSTDFQPAQLALCKQ 236

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLK 284
             G+  LP+ I    P L+R  + +  T    ++    E LK   +++
Sbjct: 237 HLGVMYLPEDIAAQEPQLMRAPDGLFPTMQLPLWLVCHEELKTNRRVR 284


>gi|168819073|ref|ZP_02831073.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343968|gb|EDZ30732.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320084607|emb|CBY94398.1| HTH-type transcriptional activator ttdR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 321

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 10/259 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALCGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I +   I R+L T      A+P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGVDIEIRVGDDI-NELYIARQLATNRRILCASPEYLERHGKPESVST 199

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243
           L +H+ +    +I +    F NW+ T  +     R++     NS   ++ + + G GI L
Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255

Query: 244 LPDYIVK---DNPNLVRIM 259
             ++ V    +   LVR++
Sbjct: 256 RSEWDVAQYIERGELVRVL 274


>gi|115345623|ref|YP_771805.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|115292944|gb|ABI93397.1| transcription regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 304

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 123/256 (48%), Gaps = 19/256 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LRVF  VA   SF  AA+ L+++ ++++R ++ LE E+  +L  R  R ++LT  G
Sbjct: 3   DLKPLRVFLEVAAQESFVRAAKALNMTPATVTRIVAKLEEELDRQLLLRTTRHVSLTSYG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +      V    +    EL + +    G+L I   +  G  L+ G ++ F L YP+I 
Sbjct: 63  ALVAARYRPVVEAFDQVGEELTQDTQPFRGRLSINVPMSFGLRLMPGLIQSFRLAYPNID 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + + ++ +D+  +  D A+R+  P +  S I RK+  I     A+  +L     P   
Sbjct: 123 LVVRMTDRLVDVMAEECDLAVRISNPPEDKSTIWRKVCEIPRKVVASKAFLDRTTRPEHP 182

Query: 184 QELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRI-------SCLQVNSYLSIMQYC 235
            +LD++  +++G D+ P+     +W      P+ +  +       + L  N+   ++   
Sbjct: 183 DQLDRNFCLSYGHDVEPE-----SW------PLHKAGMKNTFTAGTALVSNNGDVLLTMI 231

Query: 236 VLGSGIALLPDYIVKD 251
              +GI LLP++I  D
Sbjct: 232 QRDAGIVLLPEFIAAD 247


>gi|324999506|ref|ZP_08120618.1| LysR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 304

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 12/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F  + R G  T AAE++ +  ++I R+IS LE  +G +LF +  RG T T  G +
Sbjct: 4   DDLRYFLELTRYGRLTVAAERMGVEHTTIRRRISALERGLGQRLFDKTPRGWTPTAAGRR 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +  +  + +    P G +RI  T   G  ++   L      +P IQ++
Sbjct: 64  LLPYAQRIEAEADAARGAVTDDGHSPRGTVRIVATDGFGGAVIAPGLSRLRRAHPGIQVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCREPLS 182
           L+  +  +D  +   D A+ + +P +    I+  L    +  Y +P YL      R+P  
Sbjct: 124 LVTKSHLLDYGVGEFDLAVTIHRPERPGFRIE-HLCDYDLRLYGSPAYLAARSRIRQP-- 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H+L+ F       + D   L + +    +  +     N +  + +    G G+ 
Sbjct: 181 -RDLADHDLVWF----VASLLDLPELQSAEDIAAQANVVFRTTNLFAQV-EAAAGGVGLG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+P ++   +  L  ++ D ++   T +   P  L NT ++      I   AR
Sbjct: 235 LVPCFLAHGDDRLRPVLHDQVSARRTFWVITPNRLLNTERIAIVAEHIAETAR 287


>gi|307131282|ref|YP_003883298.1| putative lysR-family transcriptional regulator [Dickeya dadantii
           3937]
 gi|306528811|gb|ADM98741.1| putative lysR-family transcriptional regulator [Dickeya dadantii
           3937]
          Length = 296

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 15/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GS T AA +L +S+S  +R I+ LE  +G++L +R  R L LT  G+ + 
Sbjct: 7   MQVFVDVADLGSLTAAANKLDMSRSMATRYIASLEHWLGVRLLHRSTRSLGLTSAGNDML 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E           +P G +RIA+++  GQ  L   L  +   YP    +LI
Sbjct: 67  VRCRQILALSEDMAALSGHGDTEPHGVIRIASSVSFGQFYLSPALSRYRARYPHTTTELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ I +  +  D +I +       +LI + L        AAP YL     P++  +L 
Sbjct: 127 LTDRAIKLVEERIDLSIDVTN-TPDHNLIAKPLGHCASVVCAAPDYLARHAHPVTPNDLI 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243
           +H+ +    L         W  T  R  G P    +      N  L ++     G G+A 
Sbjct: 186 RHDCLNHTRL------GREWFFT-HRENGAPHRVMVAGRVIANDTLVLLNAARAGEGVAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+++ +   +   L  ++ D  T +  +Y CY         L+   +F+
Sbjct: 239 LPEFVARAGLEAGELTPLLPDYQTQALGIYACYVSRRHMPATLRTLLDFL 288


>gi|296160294|ref|ZP_06843112.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295889505|gb|EFG69305.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 309

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 122/245 (49%), Gaps = 6/245 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  +  + S+T AA+ L LS+S++S++I+ LET +G+ L  R  R + +TE G   +
Sbjct: 10  MAIFAKIVETNSYTEAAKLLGLSKSAVSKEINRLETGLGVTLLKRTTRKIEVTEIGRTYY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  ++      +++   +P G LR+   +  G   +   L  F+     +Q+ L 
Sbjct: 70  EYCARLLAEVRGADAFVRQYHEEPIGNLRVVAPMTFGNRAVLPALCRFISNNIHVQVDLE 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D++    D AI + +     + +QR L  IH   YA+P YL +       ++L 
Sbjct: 130 LTDRVVDLNDQNVDVAIVINRDKPEEATVQR-LAEIHWGIYASPTYLASHPPVQGPEDLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + FG   P        L    R + E R+ C L+ N+ ++++   + G GIA LP 
Sbjct: 189 RHGFLLFGG--PAHTTSLQ-LRYGKRQL-ETRVRCVLRSNNSVALLYAAIDGIGIAYLPR 244

Query: 247 YIVKD 251
           Y+ ++
Sbjct: 245 YVARE 249


>gi|295097319|emb|CBK86409.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 295

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 148/295 (50%), Gaps = 21/295 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA +GSFT AAE + L+++ +S  I  LE E+G+ L  R  R LTLTE G   H+ 
Sbjct: 9   MFIAVADTGSFTAAAEAMGLTKAVVSFHIRQLEEELGVTLLLRTTRRLTLTEAGKLFHQR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +    E  Q +++ +    +G+LRI TT + G  ++   L EF  L+PD++++ +  
Sbjct: 69  SVMLLRDAERLQDDVRANHAGLTGELRITTTPEYGSQVVVPLLAEFSQLHPDLRVRHVSS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELDK 188
           +   D+  +  D AIRL   +  S      + +  +   A P +L N   P+ S+++L +
Sbjct: 129 SLHADLIAERFDVAIRL-GTLADSRYHAALMTSFTILPVATPGWLAN--HPVDSLEQLAE 185

Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGEP------RISCLQVNSYLSIMQYCVLGSGI 241
            + I    +  +      W +  VD   G+P      +   L  +S  ++M + + G G+
Sbjct: 186 ADWI----IHERLTSPLRWQMRGVD---GQPVSFEIKKAPRLYADSAQALMAFALAGCGV 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ALLP+++V+   D   LV ++         +Y  YP+A     K++ F +F+ ++
Sbjct: 239 ALLPEWLVRNALDAGELVSLLPAYTFAQQGIYAVYPDARHVPAKVRTFIDFMRVR 293


>gi|332086718|gb|EGI91858.1| HTH-type transcriptional activator ttdR [Shigella boydii 5216-82]
          Length = 310

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLSRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWVLEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|167835763|ref|ZP_02462646.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 303

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 96/190 (50%), Gaps = 2/190 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E    ++ P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREAMHGAI-PQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ R+L    M    +P Y +    P +  
Sbjct: 126 DIVLSDAAVDPLDNRSDIAIR-SGALDDSRLVMRRLGGSRMVVVGSPAYFERNGVPATPD 184

Query: 185 ELDKHNLITF 194
           +LD+HN I  
Sbjct: 185 DLDRHNCIGL 194


>gi|330011025|ref|ZP_08306952.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328534314|gb|EGF60926.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 299

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 14/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGNISAAARKLEITPPSVSNALRLLEEHIGHPLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+     LE +   +++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTAAAVETLEKSLEIIRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  ++I  +  D  IR    ++   + +  +       YA+  YL     P    
Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILEGGVVARPLMKPFREGLYASSAYLAEYGVPAMPA 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L  H LI +       ++P  + D     TV+ P        L  N    +      G 
Sbjct: 186 DLHHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHGL 239

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  L + I++  P+    + +MED       VY  YP+    T ++KA  +F+ + A +
Sbjct: 240 GIGRLFEPILQLQPDREQFIPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFLIMHAAE 299


>gi|310815893|ref|YP_003963857.1| transcriptional regulator LysR family precursor [Ketogulonicigenium
           vulgare Y25]
 gi|308754628|gb|ADO42557.1| transcriptional regulator LysR family precursor [Ketogulonicigenium
           vulgare Y25]
          Length = 299

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 126/272 (46%), Gaps = 9/272 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V  +G F  AA +LHLS S++++ I+ LE  +G+ LF R  R L LT++G+ 
Sbjct: 6   DDIGIFLAVCDAGRFAGAATRLHLSPSAVAKAIARLEARLGVTLFARSTRRLALTDEGAI 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +   +++ T+  L+     P+G LRI+     G  ++   L      +P +Q+Q
Sbjct: 66  YAETCRQARAEIDRTEGMLRALHSTPAGLLRISLPPLFGAEVIAPALFSLTDDWPLLQLQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    +  D+     D A+R+  P   + +  R++ T  +   A+  Y+     P  + +
Sbjct: 126 IDTSTQRNDLIGAGIDFAVRIGAPPPLAGITARRIGTQRVMLCASADYVAARGVPRRLAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H LI     +P      + + T+  P G      L ++  L      + G GI ++P
Sbjct: 186 LGAHRLIAMPQGMPWQFSAQDHVETL-LPAGP-----LHLDGSLLTRAAIMAGHGIGMVP 239

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            ++++D      +V ++ + +T    +Y  +P
Sbjct: 240 AWLMRDALAARQVVAVLPEALTGDLPIYALWP 271


>gi|307293670|ref|ZP_07573514.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306879821|gb|EFN11038.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 302

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 116/247 (46%), Gaps = 13/247 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  VA  GSFT AAE L +++   S  +  LE  VG++L +R  R + LTE G
Sbjct: 3   DLEPLLIFTRVADMGSFTRAAESLGIAKGRASTAVRDLEAAVGVRLLHRTTRNVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H    ++    +              G+LR+    ++ +  +   L  FL+ YPD++
Sbjct: 63  RAFHARARDLLAASDDLYSMFAGDRAALRGRLRVDLPTEIARTAIMSALPTFLVAYPDLE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC +R+  P+   +L+   +  + M   A+P YL     P S 
Sbjct: 123 LELSSTDRQVDLVQEGFDCVLRI-GPVGDETLVALPVGKLRMVNVASPAYLARHGVPRSF 181

Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL---SIMQYCVLG 238
           ++L   +H ++ +   +    + + W    + P G  R + + ++  L   S+  Y   G
Sbjct: 182 EDLMRQQHRMVHYSRTL--GAKPYGW----EYPDGNGRYATVPLSGALHVNSVQTYEAAG 235

Query: 239 -SGIALL 244
            +G+ L+
Sbjct: 236 LAGVGLI 242


>gi|301165804|emb|CBW25376.1| putative lysR-family transcriptional regulator [Bacteriovorax
           marinus SJ]
          Length = 299

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 131/290 (45%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L    +VA + SF  AAE L++S  +ISR IS LE  +G+ L  R  R +  TE G  
Sbjct: 7   DGLVALKLVAENKSFKKAAEILNISTPAISRIISNLERRMGVILLTRTTRNVNPTEAGIT 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     ++   Q  ++    +PSG LRI   +   Q+ L+  ++EFL  YP +Q++
Sbjct: 67  FLNKAGPAIDEIIDAQSSVRTLGNEPSGLLRINAPVIFYQHYLKDYVREFLKKYPKVQLE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D++ +DI     D  IR+   I    +  +    I     A+P Y+K    P   +E
Sbjct: 127 IFSDDQAVDIFSQGFDAGIRVDDIIAKDLIALKLFGPIDFITVASPKYIKEFGSPSHPKE 186

Query: 186 LDKHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           L  HN  L+ FG      + D  W     +     R++  L +N+   I Q  +  SGI 
Sbjct: 187 LLDHNCILLRFGS--GTSVYD-KWEFEDKKKEFTVRVNGNLILNNSEHIRQAALSHSGII 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +    V ++     L  ++E+  T S   Y  YP  +  +  L+AF NF
Sbjct: 244 YIEKGSVINDLERGKLKVVLEEYKTQSTGFYLYYPHKIHISPALRAFINF 293


>gi|294011961|ref|YP_003545421.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292675291|dbj|BAI96809.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 313

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 127/284 (44%), Gaps = 9/284 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  VA  GSF  AA QL LS S ++R I+ LE  +G+ L  R  R + LT++G  
Sbjct: 5   DTMRAFVTVATVGSFAEAARQLRLSPSVVTRSIADLEDWLGLILLNRTTRSVRLTDRGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V   +E  +  ++    +P G L++A  I  G+  +   +   L  +P + + 
Sbjct: 65  FLDSCRQVLEDIEGAERRVRGEDAEPRGALKVAAPILFGRLHVLPIITRILTKHPSLTVH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +++I ++ +  D A+R+   +  SS+   +L ++     A+  Y++    P +  +
Sbjct: 125 LTLSDRNIHLAEESVDVAVRV-GDLADSSMKAIRLGSVSRVLVASRRYVERRGMPKAPND 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H++I F  L       F     V R   EPR   L VNS  + +     G GI+   
Sbjct: 184 LSAHDIIAFESLDATNEWRFGPSGKVVRV--EPR---LTVNSADAAIAAAEAGLGISRTL 238

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            Y V D+     LV ++         V   YP     +  L AF
Sbjct: 239 SYQVMDSVLAGRLVPLLVSFTAEKLPVSAIYPARRIASTNLGAF 282


>gi|218660834|ref|ZP_03516764.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 262

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 101/189 (53%), Gaps = 4/189 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   G F+ AA    ++ S++S+ ++ LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEIFVSVVERGGFSAAATVRRMTPSAVSKLVARLEARLGVRLVNRSTRRLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +  +  +   +   + E Q SS  + +G++RI T+   G ++L   +  F+ L+P + + 
Sbjct: 71  YERSIAILADI--AEAERQASSGEEAAGRIRINTSGSFGNHVLAPLVPAFMALHPAVTLD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +K ID+  + AD AIR   P++SSSLI RKL        A+P YL    EP ++ +
Sbjct: 129 IAHTDKVIDLMEERADVAIRA-GPLKSSSLIARKLGATGKIIVASPDYLGRHGEPRTLAD 187

Query: 186 LDKHNLITF 194
           L +H  I F
Sbjct: 188 LRRHCRIGF 196


>gi|187925301|ref|YP_001896943.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187716495|gb|ACD17719.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 327

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A+ GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEAGLKTRLFERTTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYP++   L 
Sbjct: 67  NCCRQALQSLDDAEAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVTFALT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   ++  +  D AIR   P Q SSL+ RKL        A+P Y+    EP      D
Sbjct: 127 LSDSLANLVQEDIDLAIRFGVP-QDSSLVARKLAPNRRVLCASPDYIARKGEP-----KD 180

Query: 188 KHNLITF 194
            H+L  F
Sbjct: 181 PHDLANF 187


>gi|27381047|ref|NP_772576.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27354213|dbj|BAC51201.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 307

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF +    GS   A  +L  S +++SR I+ LE  VG +L +R  R + L+E+G +
Sbjct: 5   DAMKVFVLAVDEGSLAAAGRKLGRSPAAVSRAIAFLEERVGAELLHRTTRSIKLSEEGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              +   V  +LE            P G L I   +  G+ +L+  L  FL  YP +  +
Sbjct: 65  YVAICRRVLTELEEADDIAAGPRAAPRGLLTITAPVVSGEMVLRPILDAFLDAYPTVSAK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++ +++  +  D A+R+   +  S+++  ++  I     AAP YLK       + +
Sbjct: 125 LLLFDRAVNLIEEGVDIALRIGH-LADSAMVAMRIGEISRVVVAAPRYLKQHPRITELGD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L KH ++    L           ++  R +   PR   L VNS  + +   V G G+A +
Sbjct: 184 LAKHQIVAMAHLPNSWTFAPQAGSSAARTVQFTPR---LVVNSTYAAVASAVAGRGVARM 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y V +      L  ++     P    +   P+   +  K++AF +F
Sbjct: 241 YSYQVAEQVARGELEIVLAADQDPEMPAHLICPQGRLSVPKVRAFTDF 288


>gi|89074526|ref|ZP_01160998.1| hypothetical D-serine deaminase activator [Photobacterium sp.
           SKA34]
 gi|89049630|gb|EAR55189.1| hypothetical D-serine deaminase activator [Photobacterium sp.
           SKA34]
          Length = 301

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 140/292 (47%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F + A   SFT AAE L L+QS++S +I  LE  +G++LF R  R L LT++G  L 
Sbjct: 14  LHCFLIAAEQMSFTRAAEVLFLTQSAVSHKIKNLEEALGVQLFIRQPRKLILTDEGLLLK 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +V +  +  +     +L+  +V+ SG + I+      Q  L   LK F+ LYP ++I L 
Sbjct: 74  QVLAANFGDIAHEIRDLK--NVELSGDINISVPPTFAQTWLLPRLKSFIDLYPMLRIHLR 131

Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             N+ +D   +  DCAI   K     + S  L+   +  +  H YA  + L +  E L +
Sbjct: 132 TRNELVDFQTESFDCAIYFGKGEYQGLHSCKLMDEAMQPVCSHDYAIANDLYDNPEGL-M 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
           Q L  H+   +     +   +  W    ++   + P   C    S L+ +Q    G G+A
Sbjct: 191 QCLLLHDAAPWA----RAGRNDEWQLWAEQYGTQLPGSECTFDRSDLA-LQAAECGIGVA 245

Query: 243 LLPDYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
           +     + +     R++   D++ PS F+ Y      ++NT K+KAF +++F
Sbjct: 246 MGRHSFIAEKLVEKRLVTPFDMMAPSPFSYYVVCRHNMQNTPKIKAFSDWLF 297


>gi|332998662|gb|EGK18258.1| HTH-type transcriptional activator ttdR [Shigella flexneri VA-6]
          Length = 333

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 9/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + V    ++  LV+++ +    S  ++  Y E L  + K  +  NF
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKFVSAWNF 291


>gi|238896421|ref|YP_002921159.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548741|dbj|BAH65092.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 299

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 14/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGNISAAARKLEITPPSVSNALRLLEEHIGHSLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+     LE +   +++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTAAAVETLEKSLEIIRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  ++I  +  D  IR    ++   + +  +       YA+  YL     P    
Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILEGGVVARPLMKPFREGLYASSAYLAEYGVPAMPA 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L  H LI +       ++P  + D     TV+ P        L  N    +      G 
Sbjct: 186 DLHHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHGL 239

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  L + I++  P+    + +MED       VY  YP+    T ++KA  +F+ + A +
Sbjct: 240 GIGRLFEPILQLQPDREQFIPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFLIMHAAE 299


>gi|90413646|ref|ZP_01221635.1| hypothetical transcriptional regulator protein, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90325267|gb|EAS41761.1| hypothetical transcriptional regulator protein, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 211

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 12/196 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F+ +  +GS   A+E   L +S+ISR+I  LE E+ I LF+R  R L LTE G+K
Sbjct: 4   EDLKLFHQIVDTGSLNRASEIFDLPKSNISRRIKSLEEELNILLFHRQNRALQLTEAGTK 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRI-----ATTIDLGQNLLQGNLKEFLLLYP 120
            +  T  +   LE +  E+   + + SG LRI        +D+G+ +       F+ +YP
Sbjct: 64  FYTKTKAMLIDLEASIQEITAPTYEVSGHLRIQLLPFPEILDIGRMIFT-----FMDMYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            I +++I   +D ++  ++ D A+R+   K ++ SSL+ R         +  P Y++   
Sbjct: 119 KISVEIITSAEDKNMVENHIDIALRVAEGKTLEDSSLVARPFKHASFGFFCTPEYVEQHG 178

Query: 179 EPLSIQELDKHNLITF 194
            P +  +L K N+I F
Sbjct: 179 MPQTADDLRKLNVIRF 194


>gi|319427671|gb|ADV55745.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 302

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 15/296 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AA+ L LS+  +SR I  +E  + ++L +R  R ++LT QG +  
Sbjct: 7   IRSFVEVANCGSFTKAAQHLDLSRLQVSRHIQEIEQWLNLRLLHRTTRSVSLTLQGEETL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ L+P + IQL 
Sbjct: 67  QYCQRLLSEVAAMESRAHSHNTELVGSIRIATPIGLGQHSLFDVVDRFIKLHPKVNIQLA 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +    +  +  D A+R   +P    +LI R+L+ I     AAP YL N   PL+    
Sbjct: 127 MSDSFAQLVDERVDVALRYTEQP--DENLIARRLMMIDAVVCAAPTYLANT-SPLN---- 179

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +  +L+    L+      +++L      + +     L+ N    ++   + G GI  LP 
Sbjct: 180 EPIDLLAHNCLVHTAQHSWHFLKEKQSEVIKV-TGNLKANDMGVLVSAALRGHGIVRLPC 238

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +      +  L  ++ D   P  T++  Y   L  + +    R FI   A+ W+ 
Sbjct: 239 DLANQYLASGQLQEVLPDFTAPGQTLWAVY---LSRSYQQMLVRAFIDFTAQQWQL 291


>gi|262380606|ref|ZP_06073760.1| transcriptional regulator [Acinetobacter radioresistens SH164]
 gi|262298052|gb|EEY85967.1| transcriptional regulator [Acinetobacter radioresistens SH164]
          Length = 302

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 138/283 (48%), Gaps = 23/283 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +++L+VF  +  SGS   A+EQL  S S +SR +  LE+++ + L  R  R L+LT
Sbjct: 1   MKSTFEELQVFVSIVDSGSIVKASEQLGQSTSGLSRILQRLESKLNVTLLERTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G        ++ ++L   +  L +S  + SGK+RI +      +++   +++F+  YP
Sbjct: 61  QEGQLFLERARKIINELNDAEELLLKSDHEVSGKIRIDSATPFVLHVIAPLMQKFMQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I+L   ++ ID+     D AIR  + +  SSL  R L    ++  A+P YL+    P
Sbjct: 121 YIEIELNSHDQIIDLLEHRTDVAIRFGQ-LNDSSLHARLLTQSRLYIVASPAYLEQYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            +  EL +H LI F    PK +  +     N   T   PI        + ++  ++ Q  
Sbjct: 180 QTAGELLQHQLIGFSS--PKHLNTWPLKLGNEYFTATAPI--------RASNGETVRQLA 229

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVI----TPSFTVYF 271
           +L  GI  L +++V  +     LV + ED I     P   VY+
Sbjct: 230 LLHHGITCLSEFLVGQDLAQNRLVALFEDQIELHYQPIHAVYY 272


>gi|257485828|ref|ZP_05639869.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331011001|gb|EGH91057.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 300

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 15/251 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  +ISR+++ LE ++G++LF+R  R ++LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E  +  L+  +   SG LR+      GQ ++   L   +L  P + I L 
Sbjct: 66  PHAKTILEASEAARTTLKADAGSASGVLRVTAPSVFGQTVIMPLLPALMLENPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L         +P YL    +P  ++EL 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCVSPDYLARHGKPALLEELR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243
            H  I         +    W +      GEP     Q     NS  ++   C  G G+A+
Sbjct: 185 HHPCI--------ALHAMPWWSFTRN--GEPITIRAQGPFSANSVEAVRTACKQGIGLAM 234

Query: 244 LPDYIVKDNPN 254
           L  + V+   N
Sbjct: 235 LTYWDVRQEIN 245


>gi|227112407|ref|ZP_03826063.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 306

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 127/284 (44%), Gaps = 8/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L+LT+ G K    
Sbjct: 9   VFVTIIDRGSMIAAAETLDISRAMVTRYLAEMETWAGARLLHRTTRKLSLTDAGEKTLAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+       ++E        SG LR++ +  L Q  L   +  FL  +P + I L ++
Sbjct: 69  CREMLALTADMRVEADTDDATLSGLLRVSCSQSLAQGALGMAITTFLRRHPRVAIDLQMN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +++  +  D A+R+   +   +LI R L        A+P YL     P  + +L  H
Sbjct: 129 NRTVNLVEERIDLALRITNELD-PNLIARPLSRCESVLCASPSYLNEYGIPRQLTDLSIH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N +T+     K +  F+     D     P    L  N  L ++   + G+GIAL P Y V
Sbjct: 188 NCLTY-TYFGKSLWHFS---RSDEKFTIPVSGNLSGNESLVLLAGALEGAGIALQPRYSV 243

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                +  LV ++ +    +  +Y  Y    +    L+   +F+
Sbjct: 244 APYLASGQLVALLPEYRPQAMGIYGIYTSRRQMPAALRTLLDFL 287


>gi|218694373|ref|YP_002402040.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|218351105|emb|CAU96809.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
          Length = 302

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 136/301 (45%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +           P Y 
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAVTPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               +P    +L  H  + F    P   + F+W    +  I       + ++   + ++ 
Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289
            ++G+GI  L    +K   D   L  ++ED  T  P F +Y  YP     +  L+AF ++
Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287

Query: 290 I 290
           +
Sbjct: 288 V 288


>gi|149919354|ref|ZP_01907836.1| putative transcriptional regulator protein, LysR family
           [Plesiocystis pacifica SIR-1]
 gi|149819854|gb|EDM79278.1| putative transcriptional regulator protein, LysR family
           [Plesiocystis pacifica SIR-1]
          Length = 306

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 145/290 (50%), Gaps = 16/290 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F  V   GS + A+ +L + ++++SR+++ LE  +G++L +R  R + LT+ G + 
Sbjct: 11  ELQAFVAVVEGGSISGASRELSVPRATVSRRLALLEERLGVRLLHRTTRKMRLTDAGVEF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R   E+   ++  +  +++   +P G LR+  ++       +  L  F   YP+++I+L
Sbjct: 71  YRHAREIVLAVDAARAAVRQGDGEPRGLLRV--SVPPTDVRFREVLCAFAERYPEVEIEL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I+  +  D+     D A R    +    LI R + T+ + A A+P YL+    P ++ EL
Sbjct: 129 IVSTRHEDLIARGIDVAWRAAADL-DPGLIARGMRTLELIAVASPAYLEAHGCPRTVDEL 187

Query: 187 DKHN-LITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243
           D H  L+ F G   P+     +W     R  G  R+    V + L +++  VL G GIA+
Sbjct: 188 DAHACLLGFEGGERPET----HWPL---RDGGRVRVRGRLVTNELMLVRDAVLRGLGIAM 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP   ++   D+  LV ++ +++     +   +P+       ++AF  F+
Sbjct: 241 LPALTIQQALDDGRLVPVLPELVGGQAKIALVFPDRKLLEPAVRAFIEFM 290


>gi|172063829|ref|YP_001811480.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996346|gb|ACB67264.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 316

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 9/247 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +    V+A +GSFT AA++L +S++++S++I+ LE   G+ L  R  R + LTE G 
Sbjct: 10  WPHIHSLTVLAVTGSFTAAAQRLGISKAAMSQRIADLEGAAGVPLVRRTTRSVRLTEAGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L   T E Y  +E     +++ + +P G +R+   + LG+  +      F+  YP ++I
Sbjct: 70  TLVDTTREAYETIEMNFARVKDLAGEPRGLVRVTMPVALGRQQIVPLFPAFIEQYPGVRI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++   +S +  D AIR        + +  KL        A+  YL     P    
Sbjct: 130 ELELSDRLFSLSQEGFDLAIR-HTTTAPQTHVAWKLCETRSLLVASREYLARRGTPEHPN 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240
            L  H+ + +     +  E   W     DR    +  P   C   N+  ++ +  + G G
Sbjct: 189 ALVDHDCLCY----LRGNEPTAWSFEPRDRRRARVSVPVRGCFAANNSEAMREAALGGLG 244

Query: 241 IALLPDY 247
           IALLPD+
Sbjct: 245 IALLPDF 251


>gi|71278918|ref|YP_267550.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144658|gb|AAZ25131.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 298

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 142/291 (48%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +  SGS T AA +L+ S  ++ R ++ LE  + I+L  R  R + +TE+G +  
Sbjct: 7   MQVFMQIIESGSLTKAANELNTSLPTVVRTLAALEEHLQIRLINRTTRKIAITEEGKRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ +++E +++E+  +   PSGKL+I+ ++  G   +   + +FL  +  + I+L 
Sbjct: 67  QRCRKIQYEIEQSELEISANQKAPSGKLKISASVMYGSAYIAPLITKFLQEHKQVTIELE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +++I++  +  D AIR+  P+  S++I RK+ ++     A P  L +    +  + + 
Sbjct: 127 LSDQNINLIEEGVDVAIRI-GPLNDSNMIARKVGSVRKIICATPALLNSLAPIIKPKNIS 185

Query: 188 KHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               I F  L        NW        +  P+  P I C  + S LS+++  +   G+ 
Sbjct: 186 DVPCILFTGL----SNGSNWNFYENDKVISIPVKGPLI-CNNITSALSVVKESL---GLG 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               Y ++    N  L  ++E   +P   V   Y  A   + +++ F +++
Sbjct: 238 QFLSYQIEQELKNGELCTVLEAFESPPLDVNVVYSHAKLMSTRIRYFVDWV 288


>gi|154246658|ref|YP_001417616.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160743|gb|ABS67959.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 310

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 142/293 (48%), Gaps = 21/293 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS----K 65
           VF   A +  F+ A  +L LS S++S+ ++ LE  +G  LF R  R L LT +G+    +
Sbjct: 10  VFVAAAETQGFSAAGRKLGLSPSAVSKLVTRLEDRLGTPLFVRSTRQLQLTAEGALYLER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R+ +E+    +T ++    +   P G+LRI+ ++  G+  +   +  FL LYP +++ 
Sbjct: 70  ARRILAEID---DTERLIATGAGAVPRGRLRISASVAFGEMCVLPRVPRFLELYPQVELD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  ID+  +  D AIR  + ++ S+L  RKL  I     A+P YL+    P   ++
Sbjct: 127 ISLSDAVIDLVDERTDIAIRTGR-LRDSTLKARKLFEIGRVIVASPAYLERHGVPQHPED 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L +H  + F     +  ED+ +            +S   + NS + + +  + G+G+A L
Sbjct: 186 LARHLCLCFN--FRRSPEDWPFRDPESGKAFTQAVSGTALGNSGVVLRRLALDGAGLARL 243

Query: 245 PDYIVKDN---PNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y V+ +     LV ++E+     I P   VY  +        +++AF +F+
Sbjct: 244 GRYHVRGDLAAGTLVSVLEEFNAGDIEPIHAVYVGHAHL---AARIRAFVDFL 293


>gi|291619369|ref|YP_003522111.1| LtrA [Pantoea ananatis LMG 20103]
 gi|291154399|gb|ADD78983.1| LtrA [Pantoea ananatis LMG 20103]
          Length = 303

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 126/260 (48%), Gaps = 15/260 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  SGSF+ AA  L ++ SS+SR I  LE  + + LF R  R L +TE G +++
Sbjct: 14  LVLFVQVVESGSFSSAARALSMTPSSVSRMIDRLEKRLNVLLFTRSTRALAVTEAGQEIY 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V    ++   +    S  P G LRI     LG+ LL   L  FL  Y +I I+L 
Sbjct: 74  HQALSVIAATKSLFSQADSYSDVPKGLLRITAPTTLGKILLTPFLPGFLRRYAEINIELN 133

Query: 128 LDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +  I+++ +  D A+R+    PI   +++ R L+ +      A HY  + R P    +
Sbjct: 134 LTDHLINLTHESYDLALRVTDTPPI---NMVARALMPVDYVLVCAEHY--DQRLPDMPGD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +HN I F D      E   WL  T++     PR   L +N+  +++   + G GIAL+
Sbjct: 189 LKQHN-IFFPDDAQFRGEWRFWLNDTMESVTLTPR---LMINNSDAMIDAILQGVGIALI 244

Query: 245 PDYIVKD---NPNLVRIMED 261
           P +I      N  L R++ D
Sbjct: 245 PTFIANGYLLNGQLRRVLPD 264


>gi|227872472|ref|ZP_03990812.1| LysR family transcriptional regulator [Oribacterium sinus F0268]
 gi|227841673|gb|EEJ51963.1| LysR family transcriptional regulator [Oribacterium sinus F0268]
          Length = 339

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 152/305 (49%), Gaps = 27/305 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +    R+FY VA+SG+ + AAEQL++SQ +IS+ I  LE  + IKLF R++RG++LT
Sbjct: 42  MEQNLSTYRIFYEVAKSGNISKAAEQLYISQPAISKTIVRLEDSLEIKLFKRNSRGVSLT 101

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L +   + +  ++  +  LQ+      G L I  +  L + +L   LK F+  YP
Sbjct: 102 DEGKVLFQYIKDAFAHIQEAEETLQKMKDFHIGHLDIGASSTLCRFILLPYLKAFMKEYP 161

Query: 121 DIQIQLILDNKDI--------DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
           +I+I   L N+D         D  +D A  A+  +  I    L++R++  I +   AAP 
Sbjct: 162 NIRIS--LKNQDSGKTLHLLEDHQIDLALAALPKKLGINQEILMEREVEDILV---AAPQ 216

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC---LQVNSY 228
           YL N      ++++       F D     +E+ N     ++  + E +I C   +++N+ 
Sbjct: 217 YLHN------LKKIRGEAFSLFQDANVMLLEEQNLSRHHIENYLKENQIYCPQIMELNTM 270

Query: 229 LSIMQYCVLGSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
             ++    +G GIA ++ D++ +D  N  LV I          + F Y     N+  L++
Sbjct: 271 DLLIDSAKIGIGIAWVIRDFVAEDLKNGQLVEIKLPQPIQKRRIAFLYNNK-NNSPSLES 329

Query: 286 FRNFI 290
           F +F+
Sbjct: 330 FVSFL 334


>gi|152982683|ref|YP_001354316.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151282760|gb|ABR91170.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 299

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 135/289 (46%), Gaps = 19/289 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  +  SGS   A+ +L  S  +I+R +  LE  +G +L  R  R L  TE G  
Sbjct: 5   DELEIFIAILDSGSLVAASRKLRRSPPAITRALGTLEERIGTRLIERTTRHLVATEAGLH 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           L +    +    E T   +QE +  P  G L++   +  G+  +   +  +L  YP++++
Sbjct: 65  LAQQARRLLADYEQT---VQEDASAPLRGTLKVTAPVVFGRRHVAPIVNSYLDQYPEMRV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI +++++D+  +  D  +R+   +  +S++ R++  +     A+P Y++   EP SI 
Sbjct: 122 ELITNDRNLDLIEEGIDVGVRI-GSLADTSMVARRVGQVQSVLVASPDYIERRGEPKSIA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSG 240
           ++  H++I F  +  K  E   W     R  G  +I  L     VN   +++     G G
Sbjct: 181 DIAHHDVI-FTAIREKAPE---WRF---RHNGREQIVALTPRLIVNEIDAVLLAAKAGRG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +A +  Y V D      L+R++  +  P   V    P A     K +AF
Sbjct: 234 LARVLSYQVADELQAGTLLRVLPKLDAPDLPVQLIVPSARLMAPKSRAF 282


>gi|148979121|ref|ZP_01815329.1| regulatory protein, LysR [Vibrionales bacterium SWAT-3]
 gi|145961987|gb|EDK27276.1| regulatory protein, LysR [Vibrionales bacterium SWAT-3]
          Length = 295

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 7/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F V    GSFT AA ++ +S+S +SR +  LET +  +L  R  + L+LTE G +  
Sbjct: 7   IKSFIVTVEEGSFTGAASKIGVSKSLVSRHVRELETYLNTRLLNRSTKSLSLTEAGRRYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E     L+  S +  G L +     L + +L   + EF   YPD+++ L+
Sbjct: 67  SEAHGLVDRIEDLNDSLRFDSSEMVGALSVMAPKGLTEIMLMPFILEFSDKYPDLKLNLM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L +   D++ +  D AIR    +     +I R +        A+P YL N  +  + ++L
Sbjct: 127 LSDGVQDLAEEGCDIAIRSGDLVSKDLGMIARTICVNQNLVCASPSYLANHSDIQTPKDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H +I   +L    +  F+          +P+   L VNS  ++      G GIA+LP 
Sbjct: 187 TNHCIIEDPNLKNDGLWRFDLGGHFHDVNLQPK---LTVNSVQAVKAAVRSGYGIAMLPR 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            + K++    ++V I+ + +     VY  Y E +    K+KAF
Sbjct: 244 QLAKEDLESGSIVEILSEYVLKERKVYALYRERVNTPRKVKAF 286


>gi|194366842|ref|YP_002029452.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349646|gb|ACF52769.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 304

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 131/288 (45%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+ ++   GS + AA  + +S +   + +  LE  +G++L  R  R   +T  G  
Sbjct: 5   ESMQVYVLIVDRGSLSAAATAMDISATMAGKHLRALEARLGMQLLSRTTRRQHMTPFGED 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+   ++ T  + Q   + P+G LRI+  +  G + L   L E++  YPD++++
Sbjct: 65  YYARCKEILRLVDETDAQAQHQQLAPAGTLRISAPVIFGTHALVPALAEYMARYPDVRVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ +D++ +  + A+R+     SS L+ R L    +   A+P YL     P ++  
Sbjct: 125 ATLTDRVVDLTEEGFEAALRIGTLAGSSELVARALTPYRLMMCASPAYLARHGTPDTLPA 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  ++F    P  +    WL      +       LQ+N+  ++    + G GI L  
Sbjct: 185 LASHQCLSFE---PSALA--QWLQAGAGELDRTPDGRLQINNGEALRSAALHGLGIVLQS 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++    D   LV++  +       ++  Y      + +L++F +F+
Sbjct: 240 TLLLAADVDAGRLVQLFPEHGQAGRPMHVVYAHDRYRSTRLRSFLDFL 287


>gi|77460407|ref|YP_349914.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384410|gb|ABA75923.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 331

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 103/192 (53%), Gaps = 5/192 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GSF+ AA QL  S S++SR IS LE  +  +L  R  R L L++ G ++
Sbjct: 12  EMAIFVKVVETGSFSEAARQLGSSPSAVSRSISRLEKALATRLLQRTTRKLRLSDGGEEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   E+    ++      + + +  G +R++    +G+ ++  ++ EFL  YP + ++L
Sbjct: 72  FKRCQEMVSAAKSVMEISGQFTHEAEGLVRVSVPKAVGRFVIHPHMPEFLRRYPKVDVEL 131

Query: 127 ILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+++ +D+  D+ D AIR+  R P   + L+ R+L+TI     A P YL     P    
Sbjct: 132 LLEDRQVDLIDDHVDLAIRITDRPP---AGLVGRQLLTIDHLLCATPQYLAEHGTPTHPH 188

Query: 185 ELDKHNLITFGD 196
           +L  H+ I  G+
Sbjct: 189 DLLNHSCIYLGE 200


>gi|114046663|ref|YP_737213.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113888105|gb|ABI42156.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 307

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 129/279 (46%), Gaps = 12/279 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  +VF  +   GS   AAE L +S+S ++R ++ +E   G +L +R  R L+LT+ G +
Sbjct: 5   EAAKVFVTIVERGSMIGAAEALDMSRSMVTRYLAEMEEWSGARLLHRSTRRLSLTDAGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +    +         S +P G LRI+ +  +   LL   ++ +L  YP   + 
Sbjct: 65  VLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLLLPSVVRPYLAQYPQATVN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL +       ++
Sbjct: 125 FHVTSQTVDLVAERIDLAIRITNEL-DPTLIARRLGECESVVCAAPSYLASHSAITHPED 183

Query: 186 LDKHNLIT---FGDLIPKCMED-FNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVL 237
           L +HN +T   FGD++ +  +      AT  + +G+    P    L  N  + ++   + 
Sbjct: 184 LTRHNCLTYSYFGDVMWRFTQTPIAAKATPTQEVGQIFNIPVKGNLSANDSMVVLNATLA 243

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           G GIA+ P +  K   D+  LV ++ +    S  VY  Y
Sbjct: 244 GEGIAMQPLWAAKPHLDSGALVPLLREFKPQSLGVYGVY 282


>gi|289667986|ref|ZP_06489061.1| transcriptional regulator [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 325

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 139/292 (47%), Gaps = 13/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VA  GSFT AAE L L ++S+S  +  LE  +G +L +R  R + LT  G+ 
Sbjct: 27  ESLRAFLRVAELGSFTRAAETLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLTGDGTA 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ + ++   ++  Q   Q    +  G+LR+  +  + ++ +   L  FL  +P +Q++
Sbjct: 87  FYQRSRDLLDDMDELQSMFQRERSQLRGRLRVDMSAGIARHFVIPALPAFLAQHPQLQVE 146

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC +R+   ++ ++L+ R L    + + A+  YL     P  + +
Sbjct: 147 ISGTDRRVDVVREGFDCVLRVGT-LEDTNLVARPLGAFRIVSCASAQYLARRGTPHCLDD 205

Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L +H+L+    T G   P   E ++  A    P+  P    + VN+    +   + G GI
Sbjct: 206 LAQHDLVHYVPTLGQRSPG-FEYYDGQAYQLLPMRGP----VTVNNGDGYLAAALAGLGI 260

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P   ++    +  LV I+ ++      V   Y +      +++AF +++
Sbjct: 261 IQAPASPLRAHLHSGALVEILPNLAVEPMPVTLLYAQRRHLPQRVRAFMDWV 312


>gi|207744828|ref|YP_002261220.1| hypothetical protein RSIPO_03042 [Ralstonia solanacearum IPO1609]
 gi|206596238|emb|CAQ63165.1| hypothetical protein RSIPO_03042 [Ralstonia solanacearum IPO1609]
          Length = 289

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 20/279 (7%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  V R GS + AA  L L+Q +  R +  LE  +G  LF R  +GL+ TE    L  
Sbjct: 3   RTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAALALR- 61

Query: 69  VTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   LE+T   L  ++        G +RI  +  +   +L   L +    YP + +
Sbjct: 62  ---PYAESLESTSAALLRAASSQGEGVRGTVRITASEVVTGEVLPAILADLHAAYPGLTL 118

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N+  D+    AD A+R+++P Q   LI R +  I +  +A   YL+    P ++ 
Sbjct: 119 ELVPSNRLEDLLRRDADIAVRMQRPSQ-GVLIARHIGGIELGVHAHRRYLERRGTPATLD 177

Query: 185 ELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L  H LI +      I        W+   DR         L+ +S L+ +     G GI
Sbjct: 178 DLAGHALIGYDRETAFIRGMKGQVPWMRR-DR-------FALRTDSDLAGLAALRAGFGI 229

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
            +    + + +P+LVR+  D + P    +    E L+++
Sbjct: 230 GICQVGLARRDPDLVRLFADEVAPVLDTWLAMHEDLRDS 268


>gi|206580580|ref|YP_002238877.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569638|gb|ACI11414.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 301

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 132/288 (45%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++++  V  + SF  AAE L   +S++SR +  LE  +G +L  R  R L++T +G +
Sbjct: 5   DAMQLYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++   +      S +P+G+ ++     L ++ +   + EFL  YPD+++ 
Sbjct: 65  YYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPDLELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI  +  DC IR  +   S++L+ R L        A+P +L     P SI +
Sbjct: 125 LCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQSIDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  +  G L  +     +WL ++D      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LHHHRAV--GYLNHRTGRTIDWLFSLDDGDCAIRMQETLVVDDTDAYIQAGIQGLGLIRI 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y+ +    +  LV  +E   +    +   YP+       ++AF ++
Sbjct: 243 ASYLAQPYLQSGALVACLEQAAS-DLPLSLVYPQNRYLPPAVRAFYDW 289


>gi|117621467|ref|YP_856626.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562874|gb|ABK39822.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 317

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 130/284 (45%), Gaps = 5/284 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  VA   SFT +AEQL + ++++S  I  LE ++G +L +R  R + LT  G  
Sbjct: 5   DAMRMFVRVAELESFTRSAEQLGVPKATLSATIRRLEEQMGTRLLHRTTRRVQLTPDGKL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +E      ++   + SG+LR+     + ++L+   L  +L  +PD+Q+ 
Sbjct: 65  CYARCQDLLADMEEFNALFRQQG-QLSGQLRVDMPSRMARHLVIPALPAWLAAHPDLQLL 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC IR+   ++SSSL+ R L        A+  YL     P S+ E
Sbjct: 124 LSSTDRRVDLVREGFDCVIRV-GALESSSLVARPLGHYRQINCASAGYLARHGTPRSLSE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+ +G         F +L              L VN   S +   + G GI  LP
Sbjct: 183 LSDHRLVHYGGGSGPRESGFEYLQADGSRAVLAMSGALTVNDSESYLAAALAGLGIIQLP 242

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              V+    +  LV I+     P   ++  Y    +   +++AF
Sbjct: 243 RVGVEPLLASGELVAILPKWQAPPLPIHALYAHRRQLAPRVQAF 286


>gi|320201970|gb|EFW76545.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           EC4100B]
          Length = 310

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G + +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGHSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|270265322|ref|ZP_06193583.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270040726|gb|EFA13829.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 299

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 144/301 (47%), Gaps = 20/301 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S+ +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGNISAAARKLEITPPSVSKALKLLEQHIGHPLFVRTTRRIELTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T      LET+   +++ + +PSG +RI  +      +L+  +  F   YP I++
Sbjct: 66  QLLEQTVAAVDSLETSLENIRDQNQEPSGLVRITLSRFAYLLILKPAMAAFCRQYPGIKL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  ++I  +  D  IR    ++   + ++ +       YA+  YL+    P +  
Sbjct: 126 EVSVYDGTVNIIDERFDLGIRFGDILEGGVVARQLMKPFREGLYASSAYLEAFGTPTTPA 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV--- 236
           EL +HNLI +       ++P  ++      TV+ P G+       +++ + +M   +   
Sbjct: 186 ELHQHNLIGYRFITNNRILPLILDHKGEQLTVEMP-GQ------LISNDIEVMADGIRNG 238

Query: 237 LGSGIALLPDY-IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294
           LG G    P + ++ D    + +ME+       VY  YP   KN GK K  +  I FL  
Sbjct: 239 LGIGRLFEPIHSLLPDKERFIPVMENYWKTYPAVYLYYP---KNAGKTKRVKTLIDFLIE 295

Query: 295 R 295
           R
Sbjct: 296 R 296


>gi|269102520|ref|ZP_06155217.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162418|gb|EEZ40914.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 310

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 124/251 (49%), Gaps = 18/251 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF +V   GS+T AA++L ++ S++S+Q+S LE  + +KL  R  R L ++E G +++
Sbjct: 20  LAVFIIVVDEGSYTAAAKKLGVTPSALSKQVSKLEKALSVKLLERTTRKLVMSESGKRIY 79

Query: 68  -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            + T+ +    +  +I   E ++ P+G + +A        +LQ  +  FL LYPDIQ+++
Sbjct: 80  EQCTAMMSAAKQAVEISSSEHTI-PAGTVTVAAPKAFMSIMLQPLVTPFLNLYPDIQLKI 138

Query: 127 ILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+  +  D   RL  KPI+   L  +++  +++   A+P Y+     P    E
Sbjct: 139 KARDGDIDLLAEEIDIVFRLTEKPIEGQVL--KQVGKVNLVLCASPDYIARKGLPQHPLE 196

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-----GSG 240
           L  H+ I  G+     + +F+         G  R S      Y        L     G G
Sbjct: 197 LKHHDCIYLGETNTDHIWEFHQ--------GTERHSIAVTGRYAVNHSQMRLKGVQDGLG 248

Query: 241 IALLPDYIVKD 251
           I + PD+++K+
Sbjct: 249 IGIFPDFVIKE 259


>gi|221209837|ref|ZP_03582818.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
 gi|221170525|gb|EEE02991.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
          Length = 303

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT +G+  +
Sbjct: 7   MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTVEGTTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +   +E+   P G +R+        + +   L +F   YPD+++ + 
Sbjct: 67  ERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHHVIPALPDFHARYPDLRVVIS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+  Y      P +  EL 
Sbjct: 127 MTDRFVDLVADGIDCAVRVGT-LSDTSLVARRIGEMAQLNCASRDYAARHGLPRTPDELP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  +  G    +   + +W  T D   G+       S + VNS  + +  CV G G+  
Sbjct: 186 DH--VAVGYFSSRTGRELDWEYT-DMDTGDVHTVKMRSIVSVNSSQAYLACCVAGLGMIQ 242

Query: 244 LP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P    + ++ D   LV ++ +   P   V   +P       +++ F +++
Sbjct: 243 APRDGLEPLLADG-TLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWL 292


>gi|218674395|ref|ZP_03524064.1| LysR family transcriptional regulator [Rhizobium etli GR56]
          Length = 307

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 133/280 (47%), Gaps = 7/280 (2%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
            A   S+  AA    +S S+I + I+ LE  +G++LF R  R ++LTE+G+ L+     +
Sbjct: 13  AAEQQSYVGAARVAGISPSAIGKSIARLEGRLGVRLFNRTTRSISLTEEGAVLYERYKRI 72

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              ++  +  +  S  +P G+LR++    +G +LL   L  F   +P+I++ +  +++ +
Sbjct: 73  IDDMQDAEAGILRSRQRPRGRLRVSVPHIVGHHLLMPILPMFAARFPEIELDIDFEDRVV 132

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+  +  D  +R  + +  + LI R L   H     +  YL     P +  +L  H  I 
Sbjct: 133 DLVAEGLDAVVRSGE-LADARLIARHLGEQHFVVCGSADYLDRRGRPQTPNDLSGHACIH 191

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN- 252
           F       +  +++    DR +    ++    ++ L   Q    G G+A LP Y+ + + 
Sbjct: 192 FKYPSSGRIAPWSFHQPYDRLLLPKNLTFNNTDAGLRAAQD---GLGLAHLPVYVAQPHL 248

Query: 253 --PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              NLV ++   + P  ++   +P   + + K++AF +F+
Sbjct: 249 RAGNLVPVLTAFMAPFGSLSLVWPSNRQLSPKVRAFVDFV 288


>gi|83594805|ref|YP_428557.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577719|gb|ABC24270.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 293

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 13/289 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF   A +GS + AA +L ++  + +R+++GLE  +G++L  R  R ++LT +
Sbjct: 1   MDTEAVTVFVTAAAAGSLSAAARRLAITPMTATRRLAGLERVLGLRLMQRTTRAVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +       +  L+ +++  SG LR+ T    G+ ++   +   L  +P++
Sbjct: 61  GEAFLPYAQAMVESEAAGRAMLRSAAIGVSGLLRVTTPAAFGRKIIAPLIPGLLRAHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L L++  +DI    AD AIR+   ++ S+LI  K+        AAP YL     P  
Sbjct: 121 RIDLDLNDAVVDIVATGADLAIRI-AVLRDSALIAHKVAASPRVLCAAPAYLAERGTPRL 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           + +L  H+ +T            +W    DR   + R++     N   ++   C+ G+GI
Sbjct: 180 LADLAGHDCLT-------QTGTTHWPFQADRRDLKARVNGRFSANGIEALHGACLGGAGI 232

Query: 242 ALLPDYIVKDN---PNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ALL  + V D+     LVRI +ED      +++  YP A     KL+ F
Sbjct: 233 ALLALWNVGDDLAAGRLVRITLEDAAALDLSIWAVYPSARFVLPKLRVF 281


>gi|119382963|ref|YP_914019.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119372730|gb|ABL68323.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 302

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 122/263 (46%), Gaps = 13/263 (4%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SFT AAE L +++S++ + +S LE  +G+KL +R  R L LT+ G            ++E
Sbjct: 21  SFTGAAESLGMTKSAVGKSVSRLEARLGVKLIHRSTRRLVLTQDGEAYLAAARRALEEIE 80

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
             +  L  +  + +G+LRI      G+ +L   L E  L  P +++ L L ++ ID   +
Sbjct: 81  AAEASLSSNHREIAGRLRIDAPAAWGRRVLLPILTEVALAQPGLRLSLSLTDRIIDPVAE 140

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D  IR  +   ++ LI RKL        AAP YL  C  P   ++L +H  +T     
Sbjct: 141 QVDLVIRFGETADTADLISRKLAEQRAPLVAAPAYLARCGVPAQPEDLLRHCCVT----- 195

Query: 199 PKCMEDFNWLATVDRPIGEP---RIS-CLQVNSYLSIMQYCVLGSGIALLPDYIVKD--- 251
                +      + RP   P   R++   ++    ++++  + G GIA +P  +V D   
Sbjct: 196 -GISREMPIGFRIARPGCAPQRLRVAPAHEIGDGSAVVEAAIAGLGIAQMPLSLVADALS 254

Query: 252 NPNLVRIMEDVITPSFTVYFCYP 274
           +  LV ++ +  T    ++  +P
Sbjct: 255 DGRLVEVLPEFGTVPVGIFALWP 277


>gi|325518543|gb|EGC98223.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 304

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 129/297 (43%), Gaps = 17/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++++S  I  LETE+G+ L  R  R + LT+ G +
Sbjct: 5   DRFVVFRAVVEAGSFTAAATALNQARAAVSFNIKQLETELGVTLLTRTTRRVELTDAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    V  + E    E++      +G LR+ +T++    +L   L  F  L+P ++++
Sbjct: 65  FYRRCLRVLDEAEGAIDEVRGEHGGMAGILRVTSTVEYAARILAPALHAFAALHPALRVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK--LVTIHMHAYAAPHYLKNCREPLSI 183
           L       D+  D  D AIRL +      L  R   L T  +    AP        P   
Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRIEHFRDLPYRGVCLGTYDVLPVMAPDLPARVGAPHPA 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLAT-------VDRPIGEPRISCLQVNSYLSIMQYCV 236
              D   L   G    +      W  T       V RP  +PRI    V++   + +   
Sbjct: 185 SPDDLARLPQLGH--SRLERIAQWTLTDRAGGEHVFRPHAKPRIV---VDNASVLRELAR 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GSG+ALLP ++V D+     LV  +     P   VY  Y        K++A+ +F+
Sbjct: 240 AGSGVALLPAWLVHDDLEAGTLVDALPAYRFPQQNVYALYVATRHVPQKVRAWVDFM 296


>gi|295691115|ref|YP_003594808.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295433018|gb|ADG12190.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 304

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 15/251 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF    +SGSF+ A  +L LS S++SR I  +E  +G++L  R  R LTLT +G   
Sbjct: 12  ELEVFVAAIQSGSFSAAGRKLGLSPSAVSRTIYRIEARLGVRLILRTTRVLTLTAEGQTY 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L+ T+ ++ +    P G+LR++  +  G+  +   L  F  LYP I + +
Sbjct: 72  LGAARRILADLDDTERQIADQGA-PRGRLRVSAALSHGRLCIVPLLGRFAQLYPHILVDI 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D++   AD AIR    +  S L  R++        A+P YL     P   ++L
Sbjct: 131 SLTDAIADVAGGQADVAIRF-GILPDSPLTARRIGETGRTIVASPDYLARHGTPQVPEDL 189

Query: 187 DKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             HN + F       + P   +  ++  TV+          ++ N+  ++ Q  + G GI
Sbjct: 190 HDHNCLNFNFRRAEPVWPFRKDGRDYALTVN--------GSIEANNGETLAQLAIAGVGI 241

Query: 242 ALLPDYIVKDN 252
             + ++ V ++
Sbjct: 242 TRVGNFSVAED 252


>gi|209515646|ref|ZP_03264510.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503882|gb|EEA03874.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 288

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 131/283 (46%), Gaps = 8/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  + R  +   AA  L + Q+++ R+++ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDARIFVALHRERTLRAAARALDIDQATVGRRLAALEHALGATLFLRTSNGYKLTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +           Q    + +G+++++TT  L    +   L+     +PD+
Sbjct: 61  GRIAIRAAEAMEQSAHDLVRHTQGVDKRLAGEVKLSTTDALAHEFVMQALERLHAKHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L      ++++   AD AIR  KP ++  L+ R+L    +  +A+P Y++   EP+ 
Sbjct: 121 SVMLDTTTLLLNLAKREADIAIRTVKP-RNPDLLARRLARWEVGLFASPDYVRRHGEPVP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +    H+L+ +     K        A V  P+ + RI   ++N+ L++      G GI+
Sbjct: 180 GERFAGHDLVVYQPYFAKARVP----AFVGEPLTDGRIVA-RLNTNLTLRAALKAGLGIS 234

Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLK 284
            +P   + +   LVRI  D     S+ V+    + L++T +++
Sbjct: 235 EIP-VPMGERDGLVRIWPDRTNDASYEVWLVTHQDLRHTARIR 276


>gi|220920852|ref|YP_002496153.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219945458|gb|ACL55850.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 311

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 132/301 (43%), Gaps = 20/301 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF      GS   A   L  S +++SR I+ LE +VG  L +R  R + L+E G +
Sbjct: 5   DAMRVFVAALDEGSLAGAGRLLGRSPAAVSRAIAFLERQVGAPLLHRTTRAIKLSEIGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V   L+  ++        P G L I      G+ +L+  +  FL  +P + + 
Sbjct: 65  YAAACRRVLVDLQEAEMVAAGEQAAPRGTLTITAPPISGEEILRPIVDAFLEAFPTVSVN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L +++ ++  +  D A+R+ +   SS +  R    +     A+P YL          +
Sbjct: 125 LLLLDRNANLVEEGIDVALRVAELPDSSMVAVRVGGGVKRVVVASPRYLAMHPRIEQPSD 184

Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVL 237
           L KH ++T   FG       + + +      PIG     +PR   L VNS  + +   V 
Sbjct: 185 LAKHRIVTTAHFGQ------DAWVFPPAAGSPIGRSIHFKPR---LVVNSVRAALGAAVG 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+  L  Y V +   + +L R++ D   P+  V    P+   +  K++AF +F   + 
Sbjct: 236 GLGVTRLYTYHVAERVHDGSLQRLLRDAEPPAMPVNLLMPQGRMSVPKVRAFIDFAAPRL 295

Query: 295 R 295
           R
Sbjct: 296 R 296


>gi|91224528|ref|ZP_01259790.1| Putative transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91190870|gb|EAS77137.1| Putative transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 294

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 21/289 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +   V  SG F+ AA+ L +  + +SR +S +E+++G+ L  R  R + +TE+G +
Sbjct: 6   DELEILMAVVDSGGFSSAADALGIQVARVSRAVSKVESQLGVTLLNRTTRRVEVTEEGHQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +++  + E+      P G+LR+        + L   ++ F   YPDIQ+ 
Sbjct: 66  FVEAVRLGLLQIQQAEEEIITRGELPKGRLRVDAASPFVLHQLVPLIQPFKEAYPDIQLD 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ + +  S+L  + L T  +   A P YL     P ++ +
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGR-LSDSTLHAKPLGTSPLFIVATPGYLSKRGFPEAVSD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HNLI F        +  N        + EP I     +S  ++ Q  + G+GIA L 
Sbjct: 185 LRSHNLIGF-----SGAKVLNQWPLRGFEMIEPDILS---SSGETVRQLVLAGNGIACLS 236

Query: 246 DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++VKD+ +  R+          V     E + NTG+ +   N +F K+
Sbjct: 237 GFMVKDDLDSGRL----------VALFESEKITNTGREQV--NAVFYKS 273


>gi|71736089|ref|YP_274501.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556642|gb|AAZ35853.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 300

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 15/251 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  +ISR+++ LE ++G++LF+R  R ++LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E  +  L+  +   SG LR+      GQ ++   L   +L  P + I L 
Sbjct: 66  PHAKTILEASEAARTTLKADAGSASGVLRVTAPSVFGQTVIMPLLPALMLENPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L         +P YL    +P  ++EL 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCVSPDYLARHGKPTLLEELR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243
            H  I         +    W        GEP     Q     NS  ++   C  G G+A+
Sbjct: 185 HHPCI--------ALHAMPWWPFTRN--GEPITIRAQGPFSANSVEAVRTACKQGMGLAM 234

Query: 244 LPDYIVKDNPN 254
           L  + V+   N
Sbjct: 235 LTYWDVRQEIN 245


>gi|330817116|ref|YP_004360821.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
 gi|327369509|gb|AEA60865.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
          Length = 316

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 145/304 (47%), Gaps = 38/304 (12%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF  +   GSF  AAE++ +S +  S+ ++ LE+ +  +L +R  R ++LTE G   
Sbjct: 6   SMQVFRHIVEIGSFVGAAERMGMSSAMASKHVAHLESRLDARLLHRTTRRVSLTEAG--- 62

Query: 67  HRVTSEVYHKLETTQIELQESS-------VKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
                E Y ++    IE+ E+S       + P G+LR+ +    G   L G + ++   Y
Sbjct: 63  ----REYYERVVPALIEIDEASQSVNTEAIVPRGRLRVVSPSSFGLRHLVGAVTDYTARY 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           P++ + + + ++ +D + +  D AI L  P   + +S   R L T  +   A+P YL   
Sbjct: 119 PEVNVDVAISDRVLDPADERYDIAI-LVTPSSTKPASPFARPLATAQILFVASPAYLAEN 177

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQ--- 233
             P ++ +L  HN+          ++D N    +D    E  I+  + +NS LS+ Q   
Sbjct: 178 GTPATLTDLAAHNI----------LQDSNGAGPLDSIAREAAIASRVALNSNLSVNQPEA 227

Query: 234 ---YCVLGSGIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAF 286
                V G+GIALL   +  D+    +LV ++ DV  T   +++     + + +   ++F
Sbjct: 228 LRIAAVNGAGIALLGTDVAGDDIDAGHLVPLLRDVSPTRRLSIHATLGASPRASTTSRSF 287

Query: 287 RNFI 290
            +F+
Sbjct: 288 VDFL 291


>gi|226953991|ref|ZP_03824455.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226835242|gb|EEH67625.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 328

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 129/300 (43%), Gaps = 30/300 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G+KL  R  R   LT+ G+   
Sbjct: 23  MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGVKLLQRSTRQHALTDIGATYA 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   +E  + E   ++ KP G+LRI +    G   +   + EF   YPD+ ++  
Sbjct: 83  ERCRQVLSIIEEAEAEATGTAAKPKGRLRIQSMASFGHYYVAPVMAEFCQTYPDLTVEYR 142

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+     D ++ L + +  S  + R++ +I     A+P YL+    P S  EL 
Sbjct: 143 TSQNAPDLLAKGIDVSLYLTESLTDSRFVARRIGSIFSVLCASPAYLQKHGIPQSPDELH 202

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-------LQVNSYLSIMQYCVLGSG 240
            H  +   +  P     ++        +GE   S        L  ++   ++       G
Sbjct: 203 DHACLRLVN--PSITPQWHL-------VGENSCSYQIDISGQLIADTPELLLDMVQQDMG 253

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IALLP + V D     +L  I+ D  +P   VY   P            R+FI  K R W
Sbjct: 254 IALLPMFAVIDAVRAGHLCHILPDWRSPDIGVYTLLPS-----------RHFIDAKTRAW 302


>gi|221197243|ref|ZP_03570290.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans
           CGD2M]
 gi|221203915|ref|ZP_03576933.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans
           CGD2]
 gi|221176081|gb|EEE08510.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans
           CGD2]
 gi|221183797|gb|EEE16197.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans
           CGD2M]
          Length = 302

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 131/276 (47%), Gaps = 16/276 (5%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 87  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R  +P   + ++ R+L +      AAP YL     P +  EL +HN I     I +  E 
Sbjct: 147 RFGEP-PDTRVVARRLASNRRLLCAAPAYLARHGTPGTPHELTRHNCIG----IRQGDEG 201

Query: 205 FN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSGIALLPDYIVKD---NPN 254
           +  W  T  R     R   +++N  L+       +++ + G GI +  ++ ++D   +  
Sbjct: 202 YGIWRLTTGRGAAR-RTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADGR 260

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LV ++ D  TPS  +Y  Y +  + + +++AF +F+
Sbjct: 261 LVVVLPDYETPSADIYAVYAQRHQMSTRIRAFVDFL 296


>gi|119945159|ref|YP_942839.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
 gi|119863763|gb|ABM03240.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
          Length = 311

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 18/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE   L+ S +S++I  LE ++G++L YR  R LT++E G  
Sbjct: 16  DDLILFAQVVEEGSFSKVAELNSLTNSVVSKRIKRLEADLGVQLLYRTTRKLTVSEAGKV 75

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++    V          +       +G L+++     G  +L G + EF  ++P   + 
Sbjct: 76  LYQGAKNVKQAALEAIDAVYGYGESVTGHLKMSVPSISGDLVLAGAVAEFCSMHPGFSVD 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N  IDI  D  D  IR    +  SSLI R L+       AAP Y+K   +P++ ++
Sbjct: 136 MSLENSFIDIVGDGYDLVIRTGY-LADSSLIARHLIDSQWVICAAPAYIKRFGKPMTPED 194

Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  HN + +        E      + N++  V         + L+        +  + G 
Sbjct: 195 LINHNCLQYAYQTTGASEWEFKGINGNYIVKVAGNFSTDNATALR--------KAALGGY 246

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           G+A +P  +V  +    +LV I  + +     +Y  YP
Sbjct: 247 GLAYVPKCLVYPDLLKGDLVDIFPERVGKKLGIYAVYP 284


>gi|116049264|ref|YP_791933.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584485|gb|ABJ10500.1| putative LysR family transcriptional regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 303

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 133/294 (45%), Gaps = 14/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+   F  V   GS + AA+ L  +++ +S  +  LE E+G+ L  R  R L LT+ G +
Sbjct: 5   DRFETFRAVVDCGSLSAAADTLGQTRAVVSFNLKRLEAELGVSLLSRSTRRLALTDAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   +V  +      + +    +  G LR+ TT + G   L   L+ F  L+P +Q+Q
Sbjct: 65  FYQRCVKVLDEARLAIDDARAEHGELRGSLRVTTTQEYGLRQLVPALQAFARLHPALQVQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   D+  +  D AIRL + ++ S+    +L +  + A A+P  L    EP     
Sbjct: 125 LSTSSLHADLIGERFDVAIRLGR-LEDSTHHAVQLASFEVLAVASPACLAALGEPPPTDL 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVLGS 239
                L   G    +  +   W   V  P G       PR   L  ++  ++  + + G 
Sbjct: 184 ESLERLQNLGH--SRLADSLPW--QVRAPDGALRSYRGPRHPMLLADNAAALRAFALDGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+LPD++V+ +     L R++ D   P   V+  YP       K++AF +F+
Sbjct: 240 GIAVLPDWLVQADLRCGALQRLLADHGFPLQGVHAVYPPTRHLPSKVRAFIDFL 293


>gi|262280426|ref|ZP_06058210.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258204|gb|EEY76938.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 304

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 132/296 (44%), Gaps = 33/296 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L+    +A   +F  AA +L +S S++SR I+ LE  +GI+LF R  R ++LTE G + L
Sbjct: 9   LKAVIALANHRNFRSAAVELDMSSSALSRNIAQLEHNLGIRLFNRTTRSVSLTEAGLQFL 68

Query: 67  HRVTSEVYHKLETTQIELQES---SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            R+T      LE   + +QE+      PSG LRI     + + +L   + E++  YPD++
Sbjct: 69  TRITP----ALEQIDLAVQETLDRRATPSGTLRINAEEGMSRQILHSVIIEYIRRYPDVR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH------MHAYAAPHYLKNC 177
           + L+ D + IDI  +  D  IR       SS + + +V I       M   A P YL   
Sbjct: 125 VDLVSDGEFIDIVKEGFDAGIRF------SSTVPQDMVAIEIGPKQSMAVVATPTYLNTH 178

Query: 178 REPLSIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
             P    +L KH  I      G +        N   T+D          L +++Y+  + 
Sbjct: 179 GIPHIPSDLLKHQCIRLRLPSGKIYKWEFSQHNESLTIDVS------GHLTIDTYMLAID 232

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             + G G+     + V    +   LVR++ED       +   YP+    +  L+AF
Sbjct: 233 SALSGIGLTYTGHWFVAPLIEQGKLVRVLEDWTPLYAGLCLYYPQGKHPSAALRAF 288


>gi|254440694|ref|ZP_05054187.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198250772|gb|EDY75087.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 310

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 123/262 (46%), Gaps = 8/262 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  + ++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISSLEEHLNVRLFQRTTRSLTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++T + ++   +  P G L +A  + +G+ L+   +  F+  YP
Sbjct: 60  EQGRAFYTGAVAVLEAVDTAEGQVAGITDNPKGSLYVAAPLGVGRRLIAPLVPNFVRDYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I+L L ++ +D++ +  D +  L +P  S+  I + +V       AAP Y+     P
Sbjct: 120 LIDIRLRLTDRTVDLTTEGLDISFFLGEPADSNLRI-KPIVHCDRVLVAAPKYIAQRGNP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           +    L  D HN +   +L      +F W L T D P         + +    + ++ + 
Sbjct: 179 VDGAALVKDAHNCL---NLRYPGAPEFQWRLQTSDGPQRFRVAGRYECDDGDVLTEWALA 235

Query: 238 GSGIALLPDYIVKDNPNLVRIM 259
           G GIAL P + V  + N  R++
Sbjct: 236 GEGIALKPVFEVAGHLNAGRLV 257


>gi|221070000|ref|ZP_03546105.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|264680678|ref|YP_003280588.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|299532758|ref|ZP_07046145.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|220715023|gb|EED70391.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|262211194|gb|ACY35292.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
 gi|298718982|gb|EFI59952.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 311

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 125/283 (44%), Gaps = 17/283 (6%)

Query: 6   DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+ F     VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R ++LT +
Sbjct: 2   DKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLMVRTTRRISLTHE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS        +   +   +  +    VK +G LRI      G+  +   +  F  L+PD+
Sbjct: 62  GSAFLEDCQRLLSDVCNAEASVSAGGVKATGHLRITAPAGFGRRHVAPLVPRFRDLHPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L ++ +D++ +  DCA+R+   +  S+L+  ++        A P YL+    P  
Sbjct: 122 TISLNLSDRVVDLAGEGFDCAVRVGD-LPDSALVSVRIADNRRLCVATPGYLERRGTPKH 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLS------IMQYC 235
             EL +H+ +T   L     +   W   +  P  G   +   +    L       +  +C
Sbjct: 181 PSELTQHDCLT---LSSDASQTRGWAFRIPHPESGTSEVVHFKPGGPLDCSDGQVLHDWC 237

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           + G GIA    + V+       LV ++E+   P   ++  +P+
Sbjct: 238 LGGWGIAWRSTWEVEAEIAAGRLVPVLEEFAAPPNGIFVVFPQ 280


>gi|15803602|ref|NP_289635.1| transcriptional activator TtdR [Escherichia coli O157:H7 EDL933]
 gi|12517639|gb|AAG58194.1|AE005535_6 putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EDL933]
          Length = 310

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNXDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|89093266|ref|ZP_01166216.1| Transcriptional regulator [Oceanospirillum sp. MED92]
 gi|89082562|gb|EAR61784.1| Transcriptional regulator [Oceanospirillum sp. MED92]
          Length = 300

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 147/302 (48%), Gaps = 29/302 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VA + SFT AAE L +S+  +SR +  +E+ +G +L +R  R +TLTE GS+  
Sbjct: 12  LKSFVEVACTSSFTQAAENLKVSRLQVSRHVKEVESWLGQRLLHRTTRKVTLTEAGSEAL 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +    +   Q      +G +RIAT I L QNLL   ++ F+  +P+I+I+++
Sbjct: 72  VYCERILDEAAAMESLAQIRQNTLAGSIRIATPIGLSQNLLIEAVQGFITEHPNIKIEIL 131

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +    +  +  D A+R   +P  + +LI R+L+TI     A+P YL+    P + ++L
Sbjct: 132 ASDSFAQLVDERIDIALRYTAQP--ADNLIARELMTIDSVICASPAYLEKNSAPKAPEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSG 240
            +H          +C+   N+    +   GE   S ++VN  +S  +   L      G G
Sbjct: 190 SQH----------QCLVHLNY-DDWEFDDGEENRS-IKVNGQISANELGTLVNAACAGQG 237

Query: 241 IALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  +P    + ++ D   LVR++ +   P  +++  Y   +  + +L A R FI      
Sbjct: 238 LIRIPCDLANPLISDG-KLVRVLSNYNLPENSLWAVY---MSRSYQLPAVRQFIDYLLTQ 293

Query: 297 WK 298
           W+
Sbjct: 294 WQ 295


>gi|260556647|ref|ZP_05828865.1| transcriptional regulator lysR family [Acinetobacter baumannii ATCC
           19606]
 gi|260409906|gb|EEX03206.1| transcriptional regulator lysR family [Acinetobacter baumannii ATCC
           19606]
          Length = 298

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 100/192 (52%), Gaps = 9/192 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  + F VV   GSF+ AA +L ++Q ++  +I  LE ++G  LF R   GL  TE   
Sbjct: 7   WDDQKFFLVVLEEGSFSAAARKLGVTQPTVRTRIEHLEHQLGTVLFSRSVHGLKPTEHAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L   T      ++        ++  P    +G +R++ +  LG  +L   L +F LLYP
Sbjct: 67  ALEVPT----RAMQRASDYFMRTASAPLNVIAGSVRVSVSDFLGTMVLPQLLSKFRLLYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L L+N   ++    AD AIR+  P+Q  +L+ +K+  + +  YA   Y++    P
Sbjct: 123 EVNIELSLNNSSANLLEQEADLAIRMYPPVQ-EALVAKKIGEVPLGLYAHRDYIQRKGNP 181

Query: 181 LSIQELDKHNLI 192
             +++L +H+LI
Sbjct: 182 TCLEDLRQHDLI 193


>gi|158424745|ref|YP_001526037.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158331634|dbj|BAF89119.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 321

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 1/188 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF  V   GSF  AAEQL L  +S+SR++  LE  +G++L +R  R +  +E G  
Sbjct: 5   DDVEVFLRVVDRGSFNGAAEQLGLPPTSVSRKVKALEDRLGVQLLHRTTRRVWPSEAGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   +    L+     ++  + +P G L++      G  +++  L  F   YP +Q+ 
Sbjct: 65  YYQKCVDAIAALDHADASIRALTQEPEGHLKVLLPHSTGILIVEPELANFRRRYPKVQLH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN  +D+     D A+RL  P++ SS   R L +  +   A+P YL     P   +E
Sbjct: 125 ITLDNHPLDLIEHGFDVAVRL-GPVRDSSYHVRNLGSQQLIFLASPDYLDEFGRPSHPRE 183

Query: 186 LDKHNLIT 193
           L  H++I 
Sbjct: 184 LADHDIIA 191


>gi|150017012|ref|YP_001309266.1| LysR family transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903477|gb|ABR34310.1| transcriptional regulator, LysR family [Clostridium beijerinckii
           NCIMB 8052]
          Length = 288

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 139/304 (45%), Gaps = 37/304 (12%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  +L+ FY +A  G  T+AA++LH++Q  +S Q+  LE E+G+KL  R +R + LT+ G
Sbjct: 2   DIKQLKYFYAIAEEGQITNAAKRLHMAQPPLSYQLKNLEDELGVKLVERGSRNIRLTDAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L++   ++    ++T+ EL++      G L I T    G +LL   L  F   YP I 
Sbjct: 62  VILYKRAKQILSLTKSTENELKDFKQGNHGTLSIGTVSSSGASLLDSRLNIFHEKYPFIN 121

Query: 124 IQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
            ++          +LD   I+I++        +R P  +S +    L    M A      
Sbjct: 122 FEIHEGNTYELLELLDKGIIEIAI--------VRTPFNNSGINSIFLPKEPMVAAMRKDL 173

Query: 174 LKNCREPLSIQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
                E ++I EL+   LI    F  LI K  +DFN+  TV     + R S L  NS   
Sbjct: 174 NWTDSEIINITELNDKPLIFYRRFESLIFKVCQDFNFQPTVFCKNDDARTSLLWANS--- 230

Query: 231 IMQYCVLGSGIALLPDYIVK--DNPNLV--RIMEDVITPSFTVYFCYPEALKNTGK--LK 284
                  G GIA++P   +K   + +++   I  D++T    + +     L ++GK  L 
Sbjct: 231 -------GLGIAIVPKSAIKLIGSSSIIYKEIDSDILTTQIAIIWSKTGYLSSSGKNFLD 283

Query: 285 AFRN 288
            F N
Sbjct: 284 LFEN 287


>gi|115360132|ref|YP_777270.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285420|gb|ABI90936.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 300

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 136/289 (47%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++++  +   G+FT AA+ L L + ++++ +  LE E+GI+L  R  R +++T +G   +
Sbjct: 7   MQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGIRLLNRSTRRVSVTAEGEAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++       +  V P G+LR+   + L + ++   L EF   YP I++ L 
Sbjct: 67  ARCVQLLGSIDDAFASFPKQRVAPKGRLRLDIAVALAKTVVIPALPEFQQRYPQIELVLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D+  +  DC +R+   ++ SS+I R +  + M   A+P Y+     P ++ EL 
Sbjct: 127 ASDQPADLIGEGIDCVVRVGT-LKDSSMIARTVGAVPMVTCASPAYVVRHGLPRTLDELR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI------ 241
            H  + F     + + ++ + A  +R +     S L  N+  +++   + G GI      
Sbjct: 186 THRAVNFFTGANRKILEWTFRANDER-VNVKLPSSLLTNNSEALLSCGLAGLGIVHALRP 244

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL P     D+  L+ ++  V      V   YP       K++ F +++
Sbjct: 245 ALQPSI---DSGQLIELLPGVPAEPKPVSVMYPNRAHLPDKVRVFIDWL 290


>gi|171319706|ref|ZP_02908796.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095047|gb|EDT40060.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 309

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 9/272 (3%)

Query: 23  AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82
           AA QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     
Sbjct: 22  AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTD 81

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
           +++E    P+G+LRI        +     L EF   YP IQ+ +I++++ +D   +  D 
Sbjct: 82  QMRELRATPTGRLRIQMLPGFALDHFGVPLAEFHRRYPGIQLDIIVNDRVVDPVEEGFDI 141

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202
           A ++  PI S SLI+R+L  +     A+P YL+    P   +EL +H    +     +  
Sbjct: 142 AFQIFPPI-SESLIERRLFVVRRLFCASPAYLEAHGAPQHPRELLQHTTALYSGYPSRN- 199

Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258
               W  T    + E  +   ++ NS   + +Y + G G+  LP  +  +      LV I
Sbjct: 200 ---RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASEALVAGRLVPI 256

Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + D      +    YP   +   K+KA   F+
Sbjct: 257 LTDFQIAPLSFAAVYPATQRQALKVKALVEFL 288


>gi|153208506|ref|ZP_01946790.1| LysR transcriptional regulator [Coxiella burnetii 'MSU Goat Q177']
 gi|165924083|ref|ZP_02219915.1| LysR transcriptional regulator [Coxiella burnetii RSA 334]
 gi|212218257|ref|YP_002305044.1| transcriptional regulator, LysR family [Coxiella burnetii
           CbuK_Q154]
 gi|120575962|gb|EAX32586.1| LysR transcriptional regulator [Coxiella burnetii 'MSU Goat Q177']
 gi|165916486|gb|EDR35090.1| LysR transcriptional regulator [Coxiella burnetii RSA 334]
 gi|212012519|gb|ACJ19899.1| transcriptional regulator, LysR family [Coxiella burnetii
           CbuK_Q154]
          Length = 292

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++ +FY VA   SF+ AA +L +S+  +S QI+ LE ++ +KL +R  R LTLTE+G+ 
Sbjct: 5   NQMEIFYFVATLKSFSRAALELGVSKGYVSTQITALEKDLMVKLLHRTTRHLTLTEEGNL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +++ H+ +     L+ES  +PSG L++     +    L   L +F   YP I + 
Sbjct: 65  FLESCAKIVHEKKLAISLLKESQAEPSGHLKVTAPPSMCNTFLTELLPKFQKKYPKISLT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +   ++     D A+R+       + I R + T      A  +YLK    P +  +
Sbjct: 125 IDPSSTVKNLLQHGIDLALRITT-TPDENYIARMITTFRFVVCATSNYLKQRTIPKTPDD 183

Query: 186 LDKHN-LITFGDLI----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +HN LI   D I    P  +++   + TV       + S +  NS L I +  +   G
Sbjct: 184 LSQHNCLIYSADPIQNRWPFQIKNSTKIVTV-------KGSLVSSNS-LIIKKALLANQG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP YI+    +   L  +  + +     VY  Y  A+K   K+K F  F+
Sbjct: 236 IARLPQYILTKEIEEGKLEVLFSENMKIEMPVYAIYASAVKIPPKIKCFIAFL 288


>gi|52425470|ref|YP_088607.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307522|gb|AAU38022.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 302

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 136/302 (45%), Gaps = 20/302 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L VF+ +A  GS   AA +L ++  SIS+ +  LE  +G+ LF R  R + LTE G 
Sbjct: 6   YGYLTVFHTIAAEGSIAGAARKLQMASPSISQSLKLLEQHIGLPLFNRTTRKMELTEAGH 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQ 123
            L   T +   +L      +Q+ S  P G +R+ T   +G  L ++ +L EF   YPDIQ
Sbjct: 66  HLLASTQDAIAQLSVAVESVQDLSGVPKGVVRM-TVPHVGYWLIIEPHLAEFCERYPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +++  +DI  +  D  IR    +    + ++      +  YA+  Y +    P  I
Sbjct: 125 LEISINDGTVDILKEGFDLGIRFGDKVDEQMVAKKLTAPFRLGLYASSAYQQQFGLPKKI 184

Query: 184 QELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            EL  H L+ F       + P  + D     +V+ P      + +  NS   I+   V+ 
Sbjct: 185 AELKNHRLVGFRFATSNRIFPLSLNDKGEEVSVEMP------TPIVANSL--IVAKDVIK 236

Query: 239 SGIAL---LPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           SGIAL       + K  D    + ++E        +Y  Y +  +  G+++A   F   K
Sbjct: 237 SGIALGRFFEPLMSKQADRAAFIPVLEKHWKTFGALYLYYMQHSQKAGRVRAVIEFFTEK 296

Query: 294 AR 295
           A+
Sbjct: 297 AQ 298


>gi|227822779|ref|YP_002826751.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227341780|gb|ACP25998.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 309

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 24/297 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A  GSF+ AA +L L+ +++SR ++ LE+ + ++LF R  R L LTE G   
Sbjct: 6   NLESFVRSAELGSFSSAARRLGLTPAAVSRNVAALESNLKLRLFQRSTRSLALTEAG--- 62

Query: 67  HRVTSEVYHKLETTQIELQESS---VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            R    V   LE+ Q  + E+S    +P+G LR++ +   G   +   L EF+  YP I+
Sbjct: 63  ERFLHSVRDHLESLQGAIAEASNEQAEPAGVLRLSMSPTFGIEYILPKLPEFMSRYPLIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            + + +N+ +D+  +  D AI     + +  +I + L + H+ A A+P Y+++   P   
Sbjct: 123 PEWMFENRQVDLIAEGYDAAIGGGFEL-TPGIIAKTLASAHIIAVASPSYMQDRVPP--- 178

Query: 184 QELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQ----VNSYLSIMQYCV 236
              D   L     ++ + M       W   +    GE + + L+    VN   ++    V
Sbjct: 179 --HDPSGLTELDGIVMRSMRTGRIRQW--QMRNVAGEEQSAALKERIVVNDPAAMRSAAV 234

Query: 237 LGSGIALL--PDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LG G+A++  PD +   +N  LVR+       +  +   Y        K + F +FI
Sbjct: 235 LGLGVAMIAKPDALPYLENGELVRLTPGWYADAGPISIYYANRTLLPTKTRVFIDFI 291


>gi|206559557|ref|YP_002230318.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035595|emb|CAR51481.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 337

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 125/254 (49%), Gaps = 7/254 (2%)

Query: 3   FDWDK---LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           F+ DK   +R F  VA++ SF  AA  L++S    SR ++ LE E+G++L  R  R ++L
Sbjct: 4   FEMDKFRAMRTFVKVAQTSSFIKAANLLNMSVGVASRHVALLEDELGVRLLNRTTRKVSL 63

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPS-GKLRIATTIDLGQNLLQGNLKEFLLL 118
           TE G+        V  +L+   + +  S+ +P+ G+LR++       + L   L  +   
Sbjct: 64  TEAGALFTESCQRVLDELDEA-LSISTSTTRPATGRLRVSAPTVFAISRLAPLLTLYRTS 122

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YPD+ I L+L ++ +D+  +  D  I     ++S +++ R L     H  A P YL +  
Sbjct: 123 YPDVTIDLMLVDRPVDLVEEQLDVCIVPAHHVKSLNVVSRPLTISEFHICATPSYLSDHG 182

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            PL   +L  H  + +     + +  F   A V   +  P+ S +  N++  + +  +  
Sbjct: 183 APLHPSDLADHAFLAYRSDHREEVMVFKDAADVAVEV-LPK-SAVTSNNFGLLRESALAD 240

Query: 239 SGIALLPDYIVKDN 252
            GIA+LP YIV+ +
Sbjct: 241 LGIAMLPAYIVQHD 254


>gi|161521681|ref|YP_001585108.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352153|ref|YP_001947780.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia multivorans ATCC 17616]
 gi|160345731|gb|ABX18816.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336175|dbj|BAG45244.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia multivorans ATCC 17616]
          Length = 297

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+ 
Sbjct: 12  NALRAFEVAARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                    H +      L    VK    L I+TT       L   L +F   +PDI ++
Sbjct: 72  YFSDVQRALHAIADATDRL----VKRRATLTISTTPSFASKWLIPRLAQFTDAHPDIDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D +      D  D AIR  KP          L  + + A  +P  L     P S + 
Sbjct: 128 VIADQQLATFRHDGVDLAIRYGKPPFGKHFAAHALFPLDVCAVCSPALLA---APASPRA 184

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    DL P       ++A +  P+       L+ N     +   V G GIAL 
Sbjct: 185 LAGHVLLHDAHDLWPA------FIAALPEPVDVDPHKGLRFNQTSLAIDAAVAGQGIALA 238

Query: 245 PDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D +V+ +    R+ +  D   P S   Y  YP   ++   +   R+++   A
Sbjct: 239 TDPLVERDIAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDAIAVMRDWMIGAA 291


>gi|134293874|ref|YP_001117610.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137031|gb|ABO58145.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 368

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 16/253 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             WD LR F  V R GS + AA  L +  S+++R+I  LE+ +GI+LF R  RG   T++
Sbjct: 1   MSWDDLRYFLAVMRGGSLSAAARALQVQHSTVARRIDALESALGIRLFDRLPRGWPPTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    + V   +       Q ++    G +R++ +     + L   L      +P +
Sbjct: 61  GLHLAEHAARVEADVHAFARAAQGAATL-DGVVRVSASPVFASHFLAPRLARAQRAWPAL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I LI D    ++    AD A+RL +P +   L  R+L T+     A+P +        +
Sbjct: 120 RIDLIGDMHAANLYAREADLAVRLSRPSE-PGLAARRLGTMRFALCASPDW--------A 170

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D    + + D + + M    WL   +R     R + +  N   ++ + CV G+GIA
Sbjct: 171 AAPPDTWAFVGYDDALAQ-MPQQQWL---ERFAAGRRFAFIS-NDLAALHRACVAGAGIA 225

Query: 243 LLPDYIVKDNPNL 255
           LLP ++V D P +
Sbjct: 226 LLPRFLV-DLPGM 237


>gi|167851614|ref|ZP_02477122.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
          Length = 285

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 1/177 (0%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSFT AA +  ++ +++SR +S LE  +G++LF R  R + LTE G        E   +L
Sbjct: 2   GSFTAAATEAGITPAAVSRSVSRLEARMGVRLFVRTTRRIRLTEVGRAYLDQCREALSRL 61

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
              + E       P+G LR++         +   L EF   YP +++   + N++ID   
Sbjct: 62  INAEREATGQQNAPAGLLRVSMPTPYAHYRVLPLLAEFCARYPQLRVDTHISNRNIDFVD 121

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF 194
           +  D AIR R P+  S+L+ RKL    +   A P YL+    P S+ EL  H  I F
Sbjct: 122 ESFDLAIRGRAPM-GSNLVARKLEDAELVIVATPDYLRRRGIPRSLDELPHHECIQF 177


>gi|167724813|ref|ZP_02408049.1| transcriptional regulator lysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 315

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 26/291 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L R  +E    +E+T   L  ++        G +RI+ +  +G  +L   +      +P
Sbjct: 67  AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L L N+  D+    AD A+R+ +P Q + LI R +  I +  +A   YL  C  P
Sbjct: 123 ALTVELALTNRVQDLLRREADIAVRMTRPAQ-TQLIARHIGGIELGLHAHRDYLARCGTP 181

Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               EL +H LI       F   I K    F+  A             L+ +S L+ +  
Sbjct: 182 RDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----------ALRTDSDLAQLAL 230

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
              G+GI      + K +P LVR++         ++    E L+ + + +A
Sbjct: 231 IRCGAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 281


>gi|325124371|gb|ADY83894.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 298

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 139/300 (46%), Gaps = 22/300 (7%)

Query: 6   DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L+ F++   VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+ 
Sbjct: 2   DRLQQFFIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPDI
Sbjct: 62  GQRILPECQNLLFDYEQLEQLIQAQKQHYRGTLKISMPSRIVHQVIIPELPDFYSRYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL   +   D+     DC +R+ + + +SSLI + +  + M   A+  YL+    P  
Sbjct: 122 HLQLHSSDDITDLIEKGIDCVVRVGQ-LDNSSLIAKFVGNLIMVNCASADYLEQYGIPEQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++L +H LI +   + +    F++      +D        S L VN+  + +   + G 
Sbjct: 181 LEDLSQHKLINYAGAVGEKQGVFSYQDGAVMMD--------SALSVNNTEAYIAAAIAGL 232

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  LP Y V+D      LV ++      S  +   YP       +L+ F  +    ARD
Sbjct: 233 GIIQLPYYDVQDKIEQATLVEVLSAYTAQSLPLNILYPNRSYIPKRLEIFMEW----ARD 288


>gi|190573959|ref|YP_001971804.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011881|emb|CAQ45502.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 305

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 122/257 (47%), Gaps = 13/257 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  +G F+ AA  L ++ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFVRVIETGGFSAAARTLEMTPSAVSKLVARLEQRLGTRLLQRSTRQLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V   L+  +     +  +P G+LR+ + +  GQ+ L   L  FL   P + + L
Sbjct: 71  YERGLRVLADLDEAE-RCASAHAEPRGRLRVNSNVPFGQHFLLPLLPAFLQRNPQVGVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ ID+     D A+R   P++SSSL+ R+L    M   AAP Y +    P + +EL
Sbjct: 130 TLNDEVIDLLEQRTDVAVRA-GPLKSSSLVARRLGATRMMIVAAPAYAQRHGLPRTAEEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             HN +  G    + M+ +  L         P G  R S        ++ Q  + G G+A
Sbjct: 189 QSHNRLDIGH--ARAMQGWPLLQDGRERMLLPSGNARASTGD-----ALRQLVLGGLGMA 241

Query: 243 LLPDYIVKDNPNLVRIM 259
            L  + V+ +    R++
Sbjct: 242 RLAAFQVQQDIAAGRLL 258


>gi|115374726|ref|ZP_01462003.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822698|ref|YP_003955056.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115368297|gb|EAU67255.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395770|gb|ADO73229.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
          Length = 307

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   +F  V   GSF  AAE L  S ++++R ++ LE+ +  +L  R +R L+LTE 
Sbjct: 2   DRLRALEIFVKVVARGSFARAAEALDTSPANVTRYMNELESHLSTRLLNRSSRKLSLTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   +   +     +S++P G+LR+   +  G   L     +F+  +P +
Sbjct: 62  GEALYERGKSILDDVAEAEALASSASLQPRGRLRLNAPVSFGILHLAPLWPQFMQRHPGV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +D+  +  D AIR+ +    ++ + RKL T      AAP YL+    P  
Sbjct: 122 ELDVSLTDRVVDLVEEGYDLAIRISR-AGPATHVARKLATSQNIVCAAPAYLRRHGRPKV 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +L +H  + +        ++++ L    + +   ++ C +  N+  ++    + G+GI
Sbjct: 181 PTDLSRHTCVGYS--YSATADEWHLLDGTGQ-MHAVKVRCAMHANNGDTVRAAALAGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P +++ D+     LV ++     P   V   YP     + K++   +F+
Sbjct: 238 TWQPTFLIADDLRQGRLVPLLPGYRMPDIDVLALYPSRRYLSAKVRVMVDFL 289


>gi|154706329|ref|YP_001424200.1| transcriptional regulator, LysR family [Coxiella burnetii Dugway
           5J108-111]
 gi|154355615|gb|ABS77077.1| transcriptional regulator, LysR family [Coxiella burnetii Dugway
           5J108-111]
          Length = 292

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++ +FY VA   SF+ AA +L +S+  +S QI+ LE ++ +KL +R  R LTLTE+G+ 
Sbjct: 5   NQMEIFYFVATWKSFSRAALELGVSKGYVSTQITALEKDLMVKLLHRTTRHLTLTEEGNL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +++ H+ +     L+ES  +PSG L++     +    L   L +F   YP I + 
Sbjct: 65  FLESCAKIVHEKKLAISLLKESQAEPSGHLKVTAPPSMCNTFLTELLPKFQKKYPKISLT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +   ++     D A+R+       + I R + T      A  +YLK    P +  +
Sbjct: 125 IDPSSTVKNLLQHGIDLALRITT-TPDENYIARMITTFRFVVCATSNYLKQRTIPKTPDD 183

Query: 186 LDKHN-LITFGDLI----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +HN LI   D I    P  +++   + TV       + S +  NS L I +  +   G
Sbjct: 184 LSQHNCLIYSADPIQNRWPFQIKNSTKIVTV-------KGSLVSSNS-LIIKKALLANQG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP YI+    +   L  +  + +     VY  Y  A+K   K+K F  F+
Sbjct: 236 IARLPQYILTKEIEEGKLEVLFSENMKIEMPVYAIYASAVKLPPKIKCFIAFL 288


>gi|254240698|ref|ZP_04934020.1| transcriptional regulator PtxR [Pseudomonas aeruginosa 2192]
 gi|126194076|gb|EAZ58139.1| transcriptional regulator PtxR [Pseudomonas aeruginosa 2192]
          Length = 312

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 13/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VA   SFT AAE L LS+S +S Q+  LE ++GI+L  R  R +TLT++G  
Sbjct: 14  NHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGEL 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V   +  +L+    ++++   +PSG+LRI    D  +  +      F+  +P +Q++
Sbjct: 74  LFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVE 133

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ D++  D+     D A+R+  P + S L   KL      A A P YL      L   +
Sbjct: 134 MLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPGYLAGLPPVLQPHD 192

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L +   I    L         W  T +R      +     L  N+ L++ +  + G+G++
Sbjct: 193 LARCEWIGHTRL------STPWTWTFERQRERATVQTRGRLLANNTLAVYRLVLDGAGVS 246

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +LP ++V        LVR++     P   +Y  YP A     +++AF
Sbjct: 247 VLPSFLVAREIARGRLVRLLPGWHLPQGGIYALYPSARYMPVRVRAF 293


>gi|296161973|ref|ZP_06844773.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887849|gb|EFG67667.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 303

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 135/298 (45%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + +   ++  V R  SFT A+E L +  S++SR+I+ LE  +GI+L  R  R L LT
Sbjct: 1   MDINLNDTAIYVEVVRRQSFTRASEALDIPASTLSRRITELEHAIGIRLLNRSTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +     +  +L     E+ E +   +G LRI+    L Q LL   ++EF   YP
Sbjct: 61  EAGAIYYEHCRRLIDQLRLAHEEIVEMNGSLTGTLRISLPDGLAQMLLPSMMREFGRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            I     + N+ +D   +  D A+R  R+P     L+  +++ +    YA+P YL     
Sbjct: 121 RITCDFHMGNEILDSISNTFDLALRFGRQP--DYELVAHRILMLPSELYASPAYLAERGA 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCV 236
           P++ ++L +H  +   D      +   W   +   +G   I     +  +    +     
Sbjct: 179 PVTPEDLVEHECLRISD----SQDRSTW--ELLNGVGAKHIDVTGRMTASHAGGLAHLAS 232

Query: 237 LGSGIALLPDY-IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GIA LP + +++ N     LVRI+ D       +Y   P +     K +AF +FI
Sbjct: 233 AGLGIAPLPAFDMMRRNVRAAGLVRILPDWSLAPIPLYALLPTS-SVPAKTRAFLSFI 289


>gi|260777805|ref|ZP_05886698.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605818|gb|EEX32103.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 299

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 128/288 (44%), Gaps = 18/288 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V   GSF+  AE  +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDIILFSQVVELGSFSKVAEINNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LTHGAKNVKQAAQEAMDAVSGFGESISGHIKMSVPSISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIARNGKPIKPED 182

Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  HN + +        E        N++  V              ++  ++ +  + G 
Sbjct: 183 LVTHNCLQYAYQTTGASEWEFKSKSGNYIVKVS--------GSFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           GIA +P  +V     N  LV +  +++     +Y  YP   +   K+K
Sbjct: 235 GIAYVPRCLVYHDIRNGQLVDLFPELVGKRLGIYAVYPFTRQPPNKVK 282


>gi|237749257|ref|ZP_04579737.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gi|229380619|gb|EEO30710.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 303

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 127/275 (46%), Gaps = 12/275 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F      GS   AA    ++   + R+I  LE  +GIKL +R  R LTLTE+G+  
Sbjct: 6   QIEAFVNATEKGSLAKAALGQGVTPVMLGRRIDALERRLGIKLMHRTTRHLTLTERGTVF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +L+  +  + E   K +G L ++     G+  +  +   FL   PD++I  
Sbjct: 66  FDQCKKILDELDQAEKMIGEGLNKATGHLIVSAPAAFGRKHVAPHAPAFLAANPDVKISF 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D +IR+   I   SLI   L + H    AAP YL+    P ++++L
Sbjct: 126 NLSDQVVDLVREGYDLSIRIGGTI-DPSLIAVNLYSNHRVVCAAPDYLEKHGVPKNLKDL 184

Query: 187 DKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +HN +TF   G        + N    + R  G      L  N    + ++C+ G G+A 
Sbjct: 185 SQHNCLTFNLQGGQQRGWHFNENNKTVIIRTAGN-----LDCNDGELLHRWCLEGYGLAW 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
              + ++    +  LV +++D   P++ +   YP+
Sbjct: 240 RSTWEIQSELASGKLVTVLDDYALPNYDIMAVYPQ 274


>gi|91782814|ref|YP_558020.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686768|gb|ABE29968.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 297

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 17/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++RVF  +A   SFT A++ L + +++++  +  +E  +G +L  R  R + LT  G 
Sbjct: 4   FEEMRVFVRIAERQSFTRASDDLQIPRATVTNLMKRMEQRLGARLLERTTRTVRLTHDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   +E  + E   S++ P G LR+     L ++ +   L  FL  +P+I++
Sbjct: 64  AYYRRCVRLIADME--EAEGSFSNLAPKGLLRVNLQGTLARHFVVPALPAFLARFPEIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP    
Sbjct: 122 TIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLAAYGEPADPS 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L  H  + +     G  +P    +FN      R +     S + V          + G 
Sbjct: 181 ALSTHRAVNYVSSATGKAVPL---EFN---VAGREVAMVLPSAVSVTGTELYTGSALSGL 234

Query: 240 GIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P Y V       R   I+ D   P   V   YP+  + + +++ F  ++
Sbjct: 235 GIVQVPQYRVAAELAAGRLKIILADFPPPPMPVSVLYPQNRQLSSRVRVFAQWL 288


>gi|254000400|ref|YP_003052463.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253987079|gb|ACT51936.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 318

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F   A+ GS + AA  L +S +  S  +  LE+E+G+ LF R  R L LT +G +L 
Sbjct: 18  LELFITTAQYGSLSAAARSLEISPAVASAALKRLESELGVLLFVRTTRSLRLTAEGERLL 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  + ++L     EL        G+L ++   DLG+N++   L EF   +PD+ +++ 
Sbjct: 78  ARSQPLINELRDLADELVAGHSLIRGELSLSLPSDLGRNVILPWLDEFQQQHPDLHLRVQ 137

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186
           L ++  D+  +  D AIR  +P  SS  +   LVT +     AAPHYL     P S  EL
Sbjct: 138 LSDRIADVMREPVDVAIRYGQPPDSSQ-VALPLVTDNRRVLCAAPHYLATHGTPSSPAEL 196

Query: 187 DKHNLITF 194
            +HN + F
Sbjct: 197 SQHNCLCF 204


>gi|238751465|ref|ZP_04612957.1| Glycine cleavage system transcriptional activator [Yersinia rohdei
           ATCC 43380]
 gi|238710332|gb|EEQ02558.1| Glycine cleavage system transcriptional activator [Yersinia rohdei
           ATCC 43380]
          Length = 305

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 132/299 (44%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    + L   +L    +    AP  L           
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLL----------- 174

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238
           + +H L    DL    +       +WLA   R +G P+I+  Q    +    ++Q  V G
Sbjct: 175 MGEHGLKVPADLANHTLLHDTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHG 233

Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIAL+ + + +      R++    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 234 QGIALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|190892871|ref|YP_001979413.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190698150|gb|ACE92235.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327194721|gb|EGE61566.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 298

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 124/295 (42%), Gaps = 17/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR GSFT A ++L ++Q+++S QI  LE  VG  LF R  R + LTE 
Sbjct: 7   FPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTET 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E +  L       ++S     G L I++T       L   L  F L +P I
Sbjct: 67  GERLAPKVTEAFAMLHDAMATARDSV---DGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++    +  ID + +  D  IR         L   +L+ +      +P   ++      
Sbjct: 124 AVRFQASSDIIDFAREQIDVGIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAESAGGIKE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++L K +L   GD+  K   +   +   D   RP         Q+ S        + G 
Sbjct: 183 PRDLLKFDLFDAGDVWWKQWFEAAGVTETDLDRRPRN-------QLGSQAVEADAAIAGH 235

Query: 240 GIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+A+L          L R+    E   +     +  YPE  +N  K+KAFRN+I 
Sbjct: 236 GVAILHPAFYAAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWIL 290


>gi|167590367|ref|ZP_02382755.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 288

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 134/284 (47%), Gaps = 10/284 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  + R  +   AA  L + Q+++ R+++ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDARIFVALHRERTLRAAARALDIDQATVGRRLAALEHALGATLFLRTSAGYELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +           Q    + +G+++++TT  L Q  +   ++     +PD+
Sbjct: 61  GRIAIRAAEAMEQSAHDLVRHTQGVDKRLAGEVKLSTTDALAQEYVMPAIERLHAKHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L    + ++++   AD AIR  KP ++  L+ R+L +  +  +A+P Y++   EP+ 
Sbjct: 121 SVLLDTTTQVLNLAKREADIAIRTVKP-RNPDLLARRLASWEVGLFASPDYVRRHGEPVP 179

Query: 183 IQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +    H+L+ +     K  +  F     V  P+ + RI   ++N+ L++      G G+
Sbjct: 180 GERFAGHDLVVYQPHFAKARVPSF-----VGEPLADGRIVA-RLNTNLTLRAALKAGLGL 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLK 284
             +P   + +   LVR+  D    + + ++    + L++T +++
Sbjct: 234 CEIP-VPMGERDGLVRVWPDRANDAQYEIWLVTHQDLRHTARIR 276


>gi|251788358|ref|YP_003003079.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247536979|gb|ACT05600.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 319

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 1/182 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F     +GSF  A   L +S +++S+ ++GLE  +G++L  R  R L LT++G+   R  
Sbjct: 13  FVQAVDTGSFAAAGRTLGISSAAVSKNVAGLEQTLGVRLMNRTTRTLNLTDEGAAFLRQA 72

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 L+     L E   +  G +R++ ++  G + L   L    + YP + I+   D+
Sbjct: 73  RIALEALDAAVDVLAEQRAEIGGHVRLSCSVGFGHDHLMPVLPGLQVRYPSLTIEADFDD 132

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  D  D AIR  + I  S+L+ R +  ++M   A+P YL     P + Q+L  H 
Sbjct: 133 RVVDLVRDGYDLAIRGGQ-IVDSALVSRPICRLNMALVASPDYLARAGVPATPQDLPSHR 191

Query: 191 LI 192
           LI
Sbjct: 192 LI 193


>gi|163746630|ref|ZP_02153987.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161379744|gb|EDQ04156.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 326

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 11/273 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +WD LR+F  VAR  S + A + L L  +++ R+++ LE  +   LF +  +G  LT
Sbjct: 21  MEQNWDDLRLFLAVAREESLSGAGKLLRLDPATLGRRMARLEKSLQTVLFVKSPQGYALT 80

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L +        +      +   S + +G++R+         LL           P
Sbjct: 81  EAGSDLMQRAERAEQAMRAATAGVPVQSDQLTGQIRVGAPDGAANYLLPQVCAAIAAENP 140

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ +Q+I   +  ++S   AD AI +  P  +  L+ +K+   H+H  AA  YL    E 
Sbjct: 141 DLDVQIIALPRVFNLSRREADMAIGVSAPT-AGRLVVQKVTDYHLHLAAAESYLAQHPEV 199

Query: 181 LSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S+ +L  H ++ +   IP  + D   ++LA     +G  R++ L  NS    ++    G
Sbjct: 200 TSVTDLQGHRMVGY---IPDMIFDRELDYLAD----LGVSRVA-LASNSVSVQVRMIQQG 251

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271
            GI +  D+ +     + RI+ D ++     Y 
Sbjct: 252 GGIGVAHDFSLAATQGVRRILTDAVSLKRAFYL 284


>gi|33600190|ref|NP_887750.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33567788|emb|CAE31702.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 317

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 7/284 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  +A +GS T AA +L  S  ++SR ++ LE ++G++L +R  R L L+E G  
Sbjct: 5   EDLETFIHIAEAGSLTQAARRLDRSLQAVSRTLAALEQDLGVQLVHRSTRRLALSEAGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +         +   ++++ E    PSG LR+   +  G + L   + +++  YP + + 
Sbjct: 65  YYHRIKPAIAAIAQARLDIAERRAAPSGTLRVGAPVLFGPDFLVPVIADYMRAYPQVHVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D++ +  D  +R+   +  S L  R+L  +    + AP Y      P   +E
Sbjct: 125 LQLTDAFADLADEGLDLVVRIGD-LPDSGLQGRRLGALRRVVFGAPAYFAQHGRPTHPEE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  I    + P        +A   R +G       + N+  +I      G GI   P
Sbjct: 184 LRQHACIVR-TVDPHPGRWVFQIAGKRRTVGV--RGAFRANTMAAIYSAVSAGLGIGYSP 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            + ++   D   +  ++ED       ++  + E      K++AF
Sbjct: 241 LWQIQRLLDAGQVETVLEDFEPRPVPIHVLWQENRLMPAKVRAF 284


>gi|317494219|ref|ZP_07952635.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917992|gb|EFV39335.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 306

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 113/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT A  QL +S SSIS+ IS LE E+ IKL  R  R + LTE G   
Sbjct: 6   RMAVFAKVVECGSFTSAGRQLEMSVSSISQTISKLENELNIKLLNRSTRSIGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   ++  + +    ++   +  P+G LRI ++  + QN++       L  YP + I L
Sbjct: 66  YQGCRKMLLEAQEVHEQIYAFNNTPTGTLRIGSSSTMAQNVIAPMTARMLREYPGLSIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  +R+   +Q SSL  ++L ++ M   AA  YL+    P      
Sbjct: 126 VTGVPAPDLIADGLDLVVRV-GALQDSSLFSKRLGSMPMVVCAAKSYLQQQGTPEK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQV--------NSYLSIMQ 233
                       P  +  F+WL    RP  E     P    L++        N   ++++
Sbjct: 181 ------------PSDIASFSWLTYSVRPDSEFELIAPEGQTLRLSPQGRFVTNDSQTLIR 228

Query: 234 YCVLGSGIALLP 245
           +   G GIA +P
Sbjct: 229 WLCAGVGIAYVP 240


>gi|306845495|ref|ZP_07478065.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306274106|gb|EFM55931.1| LysR family transcriptional regulator [Brucella sp. BO1]
          Length = 325

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H
Sbjct: 27  MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 86

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 87  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 146

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P +I++L 
Sbjct: 147 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 205

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP G      LQ NS   + +  + G GIA    +
Sbjct: 206 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 259

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 260 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306


>gi|218889824|ref|YP_002438688.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218770047|emb|CAW25809.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 317

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT A++QL+ + + +SR ++ LET +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTEAGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+GKL++ +   +GQ+ +   +  +   Y D+   L
Sbjct: 66  LLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+  D+  +  D AI +   +  S  I +++   +    A+P YL+    P    EL
Sbjct: 126 TMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPSEPSEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             H+ +    L+   +    WL   D P G+  +S      QVN   ++ +    G GI 
Sbjct: 186 ASHDCLR---LVSPVVPLDRWL--FDGPNGQEMVSIGASPFQVNVGDAMTEAIRSGLGIG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y   ++     LVR++         VY  YP       K+K +  ++
Sbjct: 241 ILPVYSAIEDLGKGTLVRVLPQHRLQQLNVYALYPSRQYLDAKIKTWVEYL 291


>gi|207722889|ref|YP_002253323.1| hypothetical protein RSMK05546 [Ralstonia solanacearum MolK2]
 gi|206588073|emb|CAQ18653.1| hypothetical protein RSMK05546 [Ralstonia solanacearum MolK2]
          Length = 297

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 138/284 (48%), Gaps = 24/284 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  +  +     +P+G LR+   +    +++   + +F   YP
Sbjct: 61  DEGAAFLAHARGILTAVDEAEELIALRRQQPAGCLRVNAAMPFMLHVIAPLVADFRAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ ID+  +  D AIR+   ++ S+L  R+L T  +   A+P YLK    P
Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRI-GTLRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR------ISCLQVNSYLSIMQY 234
            +I++L  H L+ F  + P+ +   +W      P+  P       +  L+ +S  ++ Q 
Sbjct: 180 RTIEDLRHHALLGF--VQPESLN--HW------PLRGPHGDRLRIVPTLKASSGETLRQL 229

Query: 235 CVLGSGIALLPDYIV---KDNPNLVRIMED----VITPSFTVYF 271
            + G+G+  L D++    +   +LV+++ D    ++ P   VY+
Sbjct: 230 ALQGAGLVCLADFMTAADRRAGDLVQVLPDATVEILQPIHAVYY 273


>gi|182677574|ref|YP_001831720.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633457|gb|ACB94231.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 304

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 131/293 (44%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  +   GSF  AAE L L  S+ +  +  LET +G++L  R  R +  T  G  
Sbjct: 5   DAMRVFVRIVERGSFVRAAEDLGLPPSTATDAVKQLETRLGVRLLQRTTRQVRTTLDGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    + + +E  + E   S   P G LR+       +  +   L  F   YPD+++ 
Sbjct: 65  YYRRCLAILNDIE--EAESAFSGALPRGLLRVDVQGTQARRFIVPALPRFFADYPDLELF 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DCA+R  +P + S +I R++  +     A+ +Y+     P     
Sbjct: 123 MSEGDRFVDLVGEGIDCALRTGEP-KESDIIARRIAMLPEVTVASANYIGRFGHPQRWDA 181

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LD H +I F     G ++P          TV  P      S L VN   +       G G
Sbjct: 182 LDGHRMIGFRSSATGGVLPLEFMVNGTRKTVTLP------STLAVNGADTYKAAAQQGLG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDV--ITPSFT-VYFCYPEALKNTGKLKAFRNFI 290
           +  +P Y V+ +    R++E +    PS T VY  YP + + + +++ F  ++
Sbjct: 236 LIQVPRYSVEQDLAEGRLLECLPETPPSPTPVYVLYPRSRQLSLRVRVFIEWV 288


>gi|104781820|ref|YP_608318.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110807|emb|CAK15520.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 300

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 133/294 (45%), Gaps = 12/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  V  +GSFT AAE+L ++++ +S+Q++ LE E    L  R  R +  TE G  
Sbjct: 9   NRLAYFTAVVETGSFTAAAERLGITKAVVSQQVARLEREFRTTLLVRSTRRVRTTEAGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +  + E    EL  S+ +P+G LR+    D G  ++   + EF   YP  +++
Sbjct: 69  FYYRCASILKEAEEAFEELSASASEPTGTLRLTAPFDYGIGVVVPVITEFSQRYPQCKVE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+     D +IR+   I    L  R++        AAP +           E
Sbjct: 129 VHFSDQTLDLGTHDLDLSIRV-GWITEQHLQARRIGDFEQRLVAAPQWRARMDALQHPTE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +  L+    L     E   W       +R + E + S + +N+ L++ +  + G+G++
Sbjct: 188 LAELPLVANTAL----REPTRWAFARGESERVVVEMK-SSVSLNATLAVREATLQGAGLS 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +LPDY+     +   L+ ++     P   ++  +P A      ++ F   +  K
Sbjct: 243 VLPDYVAAPDLEAGRLIEVLPGWALPRGEIHVVFPTARFRPVNVRVFTELLARK 296


>gi|23499940|ref|NP_699380.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|161620258|ref|YP_001594144.1| hypothetical protein BCAN_B0178 [Brucella canis ATCC 23365]
 gi|163844367|ref|YP_001622022.1| hypothetical protein BSUIS_B0181 [Brucella suis ATCC 23445]
 gi|254699474|ref|ZP_05161302.1| LysR family transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|254702597|ref|ZP_05164425.1| LysR family transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|254706271|ref|ZP_05168099.1| LysR family transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|254711436|ref|ZP_05173247.1| LysR family transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|256014964|ref|YP_003104973.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|256029934|ref|ZP_05443548.1| LysR family transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256043097|ref|ZP_05446041.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256059587|ref|ZP_05449785.1| LysR family transcriptional regulator [Brucella neotomae 5K33]
 gi|256111917|ref|ZP_05452873.1| LysR family transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|256157762|ref|ZP_05455680.1| LysR family transcriptional regulator [Brucella ceti M490/95/1]
 gi|256253270|ref|ZP_05458806.1| LysR family transcriptional regulator [Brucella ceti B1/94]
 gi|261220386|ref|ZP_05934667.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261313717|ref|ZP_05952914.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261319041|ref|ZP_05958238.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261323554|ref|ZP_05962751.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261749926|ref|ZP_05993635.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261753179|ref|ZP_05996888.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|265986955|ref|ZP_06099512.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265989532|ref|ZP_06102089.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993366|ref|ZP_06105923.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|265996265|ref|ZP_06108822.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|23463518|gb|AAN33385.1| transcriptional regulator, LysR family [Brucella suis 1330]
 gi|161337069|gb|ABX63373.1| Hypothetical protein BCAN_B0178 [Brucella canis ATCC 23365]
 gi|163675090|gb|ABY39200.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|255997624|gb|ACU49311.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260918970|gb|EEX85623.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261298264|gb|EEY01761.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261299534|gb|EEY03031.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261302743|gb|EEY06240.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261739679|gb|EEY27605.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261742932|gb|EEY30858.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|262550562|gb|EEZ06723.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|262764236|gb|EEZ10268.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|263000201|gb|EEZ12891.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|264659152|gb|EEZ29413.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
          Length = 306

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H
Sbjct: 8   MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 68  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P +I++L 
Sbjct: 128 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP G      LQ NS   + +  + G GIA    +
Sbjct: 187 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 240

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 241 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|117922034|ref|YP_871226.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614366|gb|ABK49820.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 293

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 9/247 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++   V  SG F+ AAE L +  + +SR ++ LE+++ + L  R  R + LT +G  
Sbjct: 6   DDLQILLTVVDSGGFSAAAEALDIQVARVSRAVTKLESQLQVTLLNRTTRRVELTNEGRL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      ++  + EL     +P GKLR+        + +   + EF  LYP+I+++
Sbjct: 66  FVDAVRLGLQTIQLAEEELMSRGEQPKGKLRVDAASPFVLHQIVPLVHEFKQLYPEIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    +H  A+  YL     P S+ E
Sbjct: 126 LTSNEGFVDLIEKRTDVAIRIGK-LTDSTLHARPLGKSKLHIVASKEYLAKRGLPKSVSE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H+LI F             L T+        +  ++ ++  ++ Q  + G+GIA L 
Sbjct: 185 LNHHSLIGFTGAKVLNQWPLKGLETI--------VPTMRASNGETVRQLALAGNGIACLS 236

Query: 246 DYIVKDN 252
            ++V D+
Sbjct: 237 GFMVSDD 243


>gi|269965803|ref|ZP_06179898.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|269829538|gb|EEZ83777.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 334

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 94/189 (49%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G  
Sbjct: 32  NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 91

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T +    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I+
Sbjct: 92  FLDKTMQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 151

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+     D AIR  +P  S+ ++     +      A+P Y+    E  S  +
Sbjct: 152 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGSNERILCASPEYVATHPELASPAD 211

Query: 186 LDKHNLITF 194
           L +HN + +
Sbjct: 212 LTQHNCLCY 220


>gi|254429073|ref|ZP_05042780.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
 gi|196195242|gb|EDX90201.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
          Length = 301

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 132/296 (44%), Gaps = 19/296 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A+  + + +S +SR+++GLE  +G++L  R +R  ++TE G
Sbjct: 3   DLNDLFYFAKVVEFGGFAPASRAITVPKSKLSRRVAGLEERLGVRLINRSSRQFSVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +  + E+ Q  +   + +P G +R+A  I L    +   L +F+  YP+I 
Sbjct: 63  QQYYEHCKAMLVEAESAQEAIDTVTAEPRGVIRLACPITLLHVHIGSFLADFMKQYPEIT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R P ++ S L+ R L    +   A+P  +     P  
Sbjct: 123 VHLEATNRRVDVISEGVDVAIRVRPPGLEDSDLVVRVLSDRRLALVASPELVAQYGMPGH 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVD----RPIGEPRISCLQVNSYLSIMQYCVL 237
            QEL     +  G   P    DF W L   D    R   +PR         +++ +  V 
Sbjct: 183 PQELSSWPSLGLGTPRP----DFRWSLRGEDGSEVRVFYQPRYVT---TDMIALRRAAVA 235

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  LP   V+   +   LV+++         ++  +P      G L A R  I
Sbjct: 236 GVGVVQLPILTVQHQLERGELVQLLPRWALAKDIIHAVFP---SRRGMLPAVRTLI 288


>gi|167584782|ref|ZP_02377170.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 323

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 137/300 (45%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EFL  YP+
Sbjct: 65  AGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTVSQTMLSRILPEFLHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P +++++I R L         AP  L     P
Sbjct: 125 VKVHVRVTNRVIDLFEDSIDVALRVRSEPPENANIIVRPLWRTEQMLVGAPSLLSQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L   +L     +    +  + +  FN +A    P G       +PR   L     ++I +
Sbjct: 185 LVPDDLAHFETLDTPSVDGRHV--FNLIA----PDGTKHVHEHDPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R+F+
Sbjct: 236 AVLDGVGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRSFV 292


>gi|194367669|ref|YP_002030279.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194350473|gb|ACF53596.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 300

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 28/302 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+++ F  V  SGS + AAEQL  + S +SR +  LE ++GI L  R  R L LT
Sbjct: 1   MKTTLDEMQAFLSVIDSGSISAAAEQLGQTPSGVSRALGRLEDKLGITLLTRTTRRLHLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    R    +   +E+ + ++     +P+G+LR+   +    +++   +  +   YP
Sbjct: 61  AEGEAFLRHARAIIDAVESAEEQMAARRERPAGRLRVDAAMPFVLHVIAPLVAGYRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q++L   ++ ID+     D AIR+  P+  S+L  R L    +   A+P YL    EP
Sbjct: 121 EVQLELNSSDRYIDLLERRTDLAIRI-GPLADSTLHARLLGRCQLRLVASPAYLARHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYC 235
            S+  L +H L++F +  P+ +  +      D     RP        + V+S  ++ +  
Sbjct: 180 ASVAALGQHTLLSFNE--PESLNRWPLPGESDGLLLVRP-------DIAVSSGETLRRLA 230

Query: 236 VLGSGIALLPDYIV---KDNPNLVRIME----DVITPSFTVYFCYPEALKNTGKLKAFRN 288
           V G GI  L D++    +    LV+++     DV  P   VY+      +NT       +
Sbjct: 231 VEGVGITCLSDFVTDRDRSAGTLVQVLAAQTLDVYQPIHAVYY------RNTAVSSRISS 284

Query: 289 FI 290
           F+
Sbjct: 285 FV 286


>gi|37222138|gb|AAP49331.1| Uvs050 [uncultured bacterium]
          Length = 307

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 145/295 (49%), Gaps = 28/295 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A + SF+ AA  L L+ +++S+ ++ LE ++G++LF R  R LTLTE G       
Sbjct: 10  FVRSAETSSFSAAARLLGLTPAAVSKNVATLEGKLGVRLFQRSTRRLTLTEAGEAF---L 66

Query: 71  SEVYHKLETTQIELQESS---VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            EV   L+T Q  L  +S    +PSG L+++     G+  +   L +F+  YPDIQ    
Sbjct: 67  LEVSGGLDTVQAALANASRNRGQPSGTLKVSLAFAFGRQYILPLLADFMAKYPDIQPDWR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +N+ +D+  +  D AI     + S  ++ R+L   +M   A+P +L + + P  + ++ 
Sbjct: 127 FENRQVDLINEGIDVAIGGGIEL-SPGVVARELARPYMVLVASPGFLADQKMPKVLADIT 185

Query: 188 KHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             + I       G + P  + + N     ++ + EP+   + +N   +I    ++G G+A
Sbjct: 186 AWDAIVRRSSNTGRIQPWQLRNKN----NEQEMVEPKARVI-LNDPEAICNAALMGVGVA 240

Query: 243 LLP-----DYIVKDNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFI 290
           L+P     +Y+   + +L+R++    +      +YF   + L    K +AF +F+
Sbjct: 241 LVPMPHVLNYL--QDGSLIRLLPKWYSDVGPLAIYFSSSKLLP--AKTRAFVDFV 291


>gi|86360876|ref|YP_472763.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284978|gb|ABC94036.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 302

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 141/294 (47%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++++F  +    SF  AA  L L++S+ +  I  LE ++G++L  R  R +  T  G+ 
Sbjct: 10  DRMQLFIRIVERRSFAAAASDLGLARSTATEAIKQLEDDLGVRLLERTTRHVAPTLDGAA 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    +  +++  +   ++  ++P G LR+     L +  L   L EFL  YP + +Q
Sbjct: 70  FYRRCVAILAEVDEAENVFRD--MQPRGLLRVDAHPLLTRTFLLPRLNEFLDRYPLLDLQ 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC IR  + I  S LI R+L  I     A+P Y+     P S   
Sbjct: 128 IGQGDRLVDLVREGIDCVIRAGE-IADSGLIMRRLGMIAEITCASPAYIARHGVPRSPDA 186

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           ++ H  + F     G ++P    +F   +TV R +  P   C L VN+  ++     LG 
Sbjct: 187 MEGHRAVGFISSRTGQVMPL---EFTVGSTV-RSVTLP---CRLTVNNSDTMSDLARLGF 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+   P Y ++   D   LV ++ D + P   +   YP+  + + +++ F ++I
Sbjct: 240 GLIQAPRYRLQRDLDEGTLVEVLADFLPPPTPLTALYPQNRQLSPRVRVFLDWI 293


>gi|83950162|ref|ZP_00958895.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
 gi|83838061|gb|EAP77357.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
          Length = 295

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 6/245 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VAR  SFT AA++L L+QS++SRQI  LE ++G  LF R  R + LT++G  L
Sbjct: 3   QLHSFEAVARRMSFTAAADELCLTQSAVSRQIRALEEDLGRALFLRKHRAIELTQEGRDL 62

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++      L+ +S  P  ++ +AT++      L   L+ F   YP+I +++
Sbjct: 63  FEAVTRGLDEIALAVNGLRRASDTP--QITVATSVAFSYYCLMPRLERFADRYPEIDLRI 120

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  ++ +D+  D AD A+ L        +  R+L    ++   +  YL+N  E     +L
Sbjct: 121 LATDQLVDLGKDDADVAV-LFGDGNWPGVEARRLFGERVYPVCSAGYLQNHPELRRPSDL 179

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
               L+    G  I   ++   WL       G+P    +++NSY  ++Q    G G+AL 
Sbjct: 180 LDQTLLHLDGGGTIWGAVDWHAWLVQ-QGVTGQPVRRGIRLNSYPMVLQGAEAGRGVALG 238

Query: 245 PDYIV 249
             YI 
Sbjct: 239 WSYIT 243


>gi|117919540|ref|YP_868732.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611872|gb|ABK47326.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 307

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 129/279 (46%), Gaps = 12/279 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  +VF  +   GS   AAE L +S+S ++R ++ +E   G +L +R  R L+LT+ G +
Sbjct: 5   EAAKVFVTIVERGSMIGAAEALDMSRSMVTRYLAEMEEWSGARLLHRSTRRLSLTDAGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +    +         S +P G LRI+ +  +   LL   ++ +L  YP   + 
Sbjct: 65  VLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLLLPSVVRPYLAQYPQASVN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL +       ++
Sbjct: 125 FHVTSQTVDLVAERIDLAIRITNEL-DPTLIARRLGECESVVCAAPSYLASHSAITHPED 183

Query: 186 LDKHNLIT---FGDLIPKCMED-FNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVL 237
           L +HN +T   FGD++ +  +      AT  + +G+    P    L  N  + ++   + 
Sbjct: 184 LTRHNCLTYSYFGDVMWRFTQTPIAVKATPTQEVGQIFNIPVKGNLSANDSMVVLNATLA 243

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           G GIA+ P +  K   D+  LV ++ +    S  VY  Y
Sbjct: 244 GEGIAMQPLWAAKPHLDSGALVPLLREFKPQSLGVYGVY 282


>gi|22127030|ref|NP_670453.1| DNA-binding transcriptional activator GcvA [Yersinia pestis KIM 10]
 gi|45442590|ref|NP_994129.1| DNA-binding transcriptional activator GcvA [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597332|ref|YP_071523.1| DNA-binding transcriptional activator GcvA [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806497|ref|YP_650413.1| DNA-binding transcriptional activator GcvA [Yersinia pestis
           Antiqua]
 gi|108813133|ref|YP_648900.1| DNA-binding transcriptional activator GcvA [Yersinia pestis
           Nepal516]
 gi|149366970|ref|ZP_01889003.1| glycine cleavage system transcriptional activator [Yersinia pestis
           CA88-4125]
 gi|153947641|ref|YP_001399983.1| DNA-binding transcriptional activator GcvA [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419649|ref|YP_001607574.1| DNA-binding transcriptional activator GcvA [Yersinia pestis Angola]
 gi|165927121|ref|ZP_02222953.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165939821|ref|ZP_02228361.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011919|ref|ZP_02232817.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166211648|ref|ZP_02237683.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167400001|ref|ZP_02305519.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419823|ref|ZP_02311576.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425269|ref|ZP_02317022.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|170023301|ref|YP_001719806.1| DNA-binding transcriptional activator GcvA [Yersinia
           pseudotuberculosis YPIII]
 gi|186896438|ref|YP_001873550.1| DNA-binding transcriptional activator GcvA [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928197|ref|YP_002346072.1| DNA-binding transcriptional activator GcvA [Yersinia pestis CO92]
 gi|229837736|ref|ZP_04457896.1| DNA-binding transcriptional dual regulator [Yersinia pestis
           Pestoides A]
 gi|229840958|ref|ZP_04461117.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843059|ref|ZP_04463209.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903576|ref|ZP_04518689.1| DNA-binding transcriptional dual regulator [Yersinia pestis
           Nepal516]
 gi|270487357|ref|ZP_06204431.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294503046|ref|YP_003567108.1| glycine cleavage system transcriptional activator [Yersinia pestis
           Z176003]
 gi|21960079|gb|AAM86704.1|AE013916_1 positive regulator of gcv operon [Yersinia pestis KIM 10]
 gi|45437455|gb|AAS63006.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51590614|emb|CAH22255.1| glycine cleavage system transcriptional activator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776781|gb|ABG19300.1| glycine cleavage system transcriptional activator [Yersinia pestis
           Nepal516]
 gi|108778410|gb|ABG12468.1| glycine cleavage system transcriptional activator [Yersinia pestis
           Antiqua]
 gi|115346808|emb|CAL19694.1| glycine cleavage system transcriptional activator [Yersinia pestis
           CO92]
 gi|149290584|gb|EDM40660.1| glycine cleavage system transcriptional activator [Yersinia pestis
           CA88-4125]
 gi|152959136|gb|ABS46597.1| glycine cleavage system transcriptional activator [Yersinia
           pseudotuberculosis IP 31758]
 gi|162352464|gb|ABX86412.1| glycine cleavage system transcriptional activator [Yersinia pestis
           Angola]
 gi|165912224|gb|EDR30861.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921017|gb|EDR38241.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989185|gb|EDR41486.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207419|gb|EDR51899.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962564|gb|EDR58585.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167050709|gb|EDR62117.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055669|gb|EDR65453.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169749835|gb|ACA67353.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186699464|gb|ACC90093.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679346|gb|EEO75449.1| DNA-binding transcriptional dual regulator [Yersinia pestis
           Nepal516]
 gi|229689935|gb|EEO81994.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697324|gb|EEO87371.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229704113|gb|EEO91125.1| DNA-binding transcriptional dual regulator [Yersinia pestis
           Pestoides A]
 gi|262361082|gb|ACY57803.1| glycine cleavage system transcriptional activator [Yersinia pestis
           D106004]
 gi|270335861|gb|EFA46638.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294353505|gb|ADE63846.1| glycine cleavage system transcriptional activator [Yersinia pestis
           Z176003]
 gi|320014161|gb|ADV97732.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 305

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 129/295 (43%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRAFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    S L   +L    +    AP  L          +
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWSGLRTERLYAEFLLPVCAPSLLTGENGLKVPSD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
           L  H L+             +WLA   R +G P+I+  Q    +    ++Q  V G GIA
Sbjct: 186 LANHTLL-------HDTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIA 237

Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+ + + +      R++    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 238 LVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|257094595|ref|YP_003168236.1| LysR family transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047119|gb|ACV36307.1| transcriptional regulator, LysR family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 312

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 17/243 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F+V AR  SFT AA +L ++QS++SR+I  LE ++G  LF+R  R L LT+ G +L+
Sbjct: 12  VRGFWVAARHLSFTRAAAELFVTQSAVSREIKKLEEQLGQPLFHRVNRTLQLTQAGEELY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E    ++     L  + V+ S  L + TTI L    L   L  F    P I ++++
Sbjct: 72  RAVDEALALIDAATDRL--AGVERS--LTVTTTIPLASLWLVPRLPRFTQRQPAIDVRIV 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186
             N  +D+   + D AIR   P   ++   R LV         P  +++   PL +  +L
Sbjct: 128 ASNDVLDLVQAHMDIAIRYASP-GGAAPPGRPLVGYSTFPVCTPALMRDPARPLRTFADL 186

Query: 187 DKHNLITFGDLI-PKCMEDF-NWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +H L+ F   +  +   D+  W + V     +P G  R S      Y  +++  + GSG
Sbjct: 187 AQHVLLEFETTVHGRPWYDWEQWFSAVKVAKFKPAGRQRFS-----HYDQVVEAAMAGSG 241

Query: 241 IAL 243
           +A+
Sbjct: 242 VAI 244


>gi|167620019|ref|ZP_02388650.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 306

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 4/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R   G++LTE G + +
Sbjct: 11  LHVFVSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTHGVSLTEAGQRYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
             T++ Y ++   +  L ++  +P G LRI + + L ++++  + L EF   YP + +++
Sbjct: 71  DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     P  + +L
Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGTPAKVADL 189

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            +H  I F    PK      W
Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208


>gi|118590278|ref|ZP_01547681.1| LysR family transcriptional regulatory protein [Stappia aggregata
           IAM 12614]
 gi|118437250|gb|EAV43888.1| LysR family transcriptional regulatory protein [Stappia aggregata
           IAM 12614]
          Length = 342

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 14/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F    + GSF+ AA+ L +SQ ++S+Q+  LE E+GI+L  R  R L+LTE G + +
Sbjct: 22  LSGFVQAVKFGSFSAAAKHLGISQPAVSQQVRALEDELGIRLLNRTTRQLSLTEAGERYY 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +L      +Q    + SG L +   +   + +L   L  F L +P I + + 
Sbjct: 82  AYARDILERLAEADRSVQSEEAQMSGPLSVGLPLGFAETVLSDFLIRFKLDHPGILLDVS 141

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+     D AIR+   I+   LI R+L        A+P YL     P    +L 
Sbjct: 142 LSDQFVDVIQQRLDVAIRMGD-IEDDRLIVRRLGLAQRCLVASPDYLDKRGRPAHPDDLK 200

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RIS-CLQVNSYLSIMQYCVLGSGIAL 243
            H+ + + ++       F        P+GE    +IS  + VN+  ++ +  + G GIAL
Sbjct: 201 DHDYLLYKNISTGTRVPFI------SPVGEKLSVKISPTMLVNNSSTLRRAAMAGLGIAL 254

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +++       +L  ++     P   V+  YP       K++ F + +F
Sbjct: 255 SNRWLIDPFLRTGDLEVVLPQWQYPPHPVHAVYPSNRFIPLKVRRFVDSLF 305


>gi|107026124|ref|YP_623635.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692692|ref|YP_838225.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170738059|ref|YP_001779319.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|254248213|ref|ZP_04941533.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           PC184]
 gi|105895498|gb|ABF78662.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650692|gb|ABK11332.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|124874714|gb|EAY64704.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           PC184]
 gi|169820247|gb|ACA94829.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 290

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 132/291 (45%), Gaps = 23/291 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR  SFT AAEQL L+Q ++SRQI  LE   G  LF RHA+GLTLT +G +L 
Sbjct: 10  LQIFSTVARHRSFTRAAEQLCLTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V  E + ++E   ++L       +  L++ T +      +   +  F   +PD+ +Q+ 
Sbjct: 70  PVVDESFARIEDISMKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D S +  D AI +        ++   L    +    AP  L+      ++ +L
Sbjct: 125 TAWQHVVDFSSEPFDAAI-VYGTSPGPGVVALPLFDERLTPVCAPE-LRQASPLGAVGDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYCVLGS 239
            +H L+          +  +W A +D        P   P    L + +  ++  + V   
Sbjct: 183 ARHTLLH------PTRDHRDWRAWLDHAGERGVDPARGPTFDTLDLATNAAMQGFGVAIG 236

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + L+ D +      L R  + V+      +F YPE L +  K++AF ++I
Sbjct: 237 DVTLVDDDVSAR--RLERPFDIVLETGARYFFVYPENLGSQQKIRAFSDWI 285


>gi|94310547|ref|YP_583757.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354399|gb|ABF08488.1| Transcriptional regulatory protein, LysR family [Cupriavidus
           metallidurans CH34]
          Length = 305

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 124/288 (43%), Gaps = 9/288 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD  R F  VARSG+ + AAEQL    ++++R I  LE  +  +LF++   G  LT+ G
Sbjct: 10  NWDDYRYFLAVARSGTLSAAAEQLGTEHTTVARHIHALERTLNTRLFHKSHTGYALTDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L   T+E                 + +G +RI      G   L   +      +P ++
Sbjct: 70  ERL-LATAETIEGALLASKAAAAGEQEIAGIVRIGAPDGFGSMFLAPRIHALTERHPRLE 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++    +   ++   AD AI L    +   +   +L    M  Y    YLK   +  + 
Sbjct: 129 VEIFAAARIFSLTRREADIAIGLSGA-EHLRVASHRLTDYRMFVYGTKSYLKRAAQIRTK 187

Query: 184 QELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  + +  +L+      F+    V+ P    R+ C  +   L+ +   + G  + 
Sbjct: 188 ADLAQHPFVGYVEELLFSPELSFSGAVGVELP---ARVRCTNL---LTQVHATLSGHCLC 241

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++P Y+  D P LV ++ D +  + T +    E    +  ++A  NFI
Sbjct: 242 IIPAYVAADFPALVPVLPDAVAVTRTFHMHVHEDHWKSAHVRAVANFI 289


>gi|15599090|ref|NP_252584.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116051932|ref|YP_789225.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254242588|ref|ZP_04935910.1| hypothetical protein PA2G_03342 [Pseudomonas aeruginosa 2192]
 gi|296387585|ref|ZP_06877060.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313109319|ref|ZP_07795285.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9950077|gb|AAG07282.1|AE004807_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115587153|gb|ABJ13168.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126195966|gb|EAZ60029.1| hypothetical protein PA2G_03342 [Pseudomonas aeruginosa 2192]
 gi|310881787|gb|EFQ40381.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 317

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT A++QL+ + + +SR ++ LET +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTEAGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+GKL++ +   +GQ+ +   +  +   Y D+   L
Sbjct: 66  LLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+  D+  +  D AI +   +  S  I +++   +    A+P YL+    P    EL
Sbjct: 126 TMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPSEPSEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             H+ +    L+   +    WL   D P G+  +S      QVN   ++ +    G GI 
Sbjct: 186 ASHDCLR---LVSPVVPLDRWL--FDGPNGQEMVSIGASPFQVNVGDAMTEAIRSGLGIG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y   ++     LVR++         VY  YP       K+K +  ++
Sbjct: 241 ILPVYSAIEDLGKGTLVRVLPQHRLQQLNVYALYPSRQYLDAKIKTWVEYL 291


>gi|312959897|ref|ZP_07774412.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311285844|gb|EFQ64410.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 332

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 1/190 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GSF+ AA QL +S S++SR IS LE  +  +L  R  R L L+E G ++
Sbjct: 17  EMAIFVKVVEAGSFSEAARQLSVSPSAVSRSISRLEKALATRLLQRTTRKLRLSEGGEEV 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   E+     +      + + +  G +R++    +G+ ++  ++ EFL  YP + +QL
Sbjct: 77  FKRCQEMVSAARSVMEVGGQFTHEAEGLVRVSVPKAVGRFVVHPHMPEFLRRYPKVDVQL 136

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL+++ +D+  D  D +IR+        L+ R+L+ I     A P YL     P    +L
Sbjct: 137 ILEDRQVDLIDDNVDLSIRITDS-PPPGLVGRQLLPIEHLLCATPQYLAEHGTPAHPHDL 195

Query: 187 DKHNLITFGD 196
            +H+ I  G+
Sbjct: 196 LEHSCIYLGE 205


>gi|293412437|ref|ZP_06655160.1| transcriptional activator TtdR [Escherichia coli B354]
 gi|291469208|gb|EFF11699.1| transcriptional activator TtdR [Escherichia coli B354]
          Length = 310

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R A G+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSAHGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LVR++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|307727366|ref|YP_003910579.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587891|gb|ADN61288.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 335

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 102/200 (51%), Gaps = 1/200 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +    A SGSF+ A+ +LH+   ++SR+++ LE  +  +L  R  R LTLT+ GS 
Sbjct: 5   EAMSILVAAAESGSFSAASRKLHMPLPTVSRKVAELEAHLNARLLVRSTRKLTLTDAGSA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++  ++   +         P G+L +   +  G+  +   + EFL  +P I ++
Sbjct: 65  YLAACKQILEQVSEAENAAAGEYSAPRGELLVTAPVVFGRLHVLPIVSEFLAAFPQITVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++++ +  ++ D A+R+ K +  SS+I  ++ T+     A+P YL    EP S  +
Sbjct: 125 LVLADRNLHLLDEHIDVALRIGK-LPDSSMIATQVGTVSRVVCASPQYLSRAGEPQSPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDF 205
           L + + + F  L    + DF
Sbjct: 184 LARFSCVVFDALPSGSIWDF 203


>gi|50120420|ref|YP_049587.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610946|emb|CAG74391.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 309

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 148/305 (48%), Gaps = 24/305 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR GS T AA +L ++  S+S+ +  LE  +G  LF R  R + LT+ G 
Sbjct: 6   YNQIRIFQSIAREGSITAAARKLEITPPSVSKSLKLLEQHIGHPLFLRTTRRIELTDTGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L + TS     LE     ++  + +PSG +RI  +      +L+  + EF   YP IQ+
Sbjct: 66  QLLQQTSRAVESLENALESIKSLNQEPSGLVRITLSRFAYLLILKPFMAEFCHSYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSI 183
           ++ + +  +++  +  D  IR    I   S++ R+L+       YA+  YL     P+  
Sbjct: 126 EISVYDGTVNMIDERFDLGIRFGD-ILGESVVARQLMKPFREGLYASAAYLAEHPTPVLP 184

Query: 184 QELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV-- 236
            +L +H LI +       ++P  ++D     TVD P G+       +++ + +M   +  
Sbjct: 185 ADLHQHQLIGYRFITNNRILPLMLDDQGEKLTVDMP-GQ------LISNDIDVMADGIRS 237

Query: 237 -LGSGIALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK---LKAFRNFIF 291
            LG G    P Y ++ D    + +M         VY  Y   LK+TGK   +KA  +F+ 
Sbjct: 238 GLGIGRMFEPVYELQPDKEQFIPVMMPYWKTYPPVYLYY---LKSTGKAKRVKALIDFLI 294

Query: 292 LKARD 296
           +K ++
Sbjct: 295 MKTKN 299


>gi|86138228|ref|ZP_01056803.1| hypothetical protein MED193_01835 [Roseobacter sp. MED193]
 gi|85825255|gb|EAQ45455.1| hypothetical protein MED193_01835 [Roseobacter sp. MED193]
          Length = 307

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   LR+F +   + + + A   L ++ +  S +I+ LE  VG  L +R  R ++L+ +
Sbjct: 1   MDTQTLRLFVLACETLNISAAGRTLGMAPAVASTRIAKLERLVGADLLHRSTRKVSLSLE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+  + E     L +   K SG LR A      Q  L   L  F+  YPD+
Sbjct: 61  GQDFLPYAREMIAQEEAALAALGKGRTKVSGTLRFAAPSTFAQLYLAPLLPTFMDKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L +   D+     D A+R    +  SSL  RKL        A+P YL+    P +
Sbjct: 121 RLDLHLSDSQFDLIEGSFDLALR-NAVLADSSLTARKLADDTRILCASPAYLERYGTPAN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L KH LI F D  PK +   N +  +  P  +    CL +N  L+     + G+GI+
Sbjct: 180 PKDLAKHRLIAFKDTEPKALISNNGMQALFDP--KSAAHCLILNDGLTQKLTTLNGAGIS 237

Query: 243 LLPDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   + V++   +  L R++ D  ++    ++  YP++   + K++ F +F+
Sbjct: 238 VNSLWAVQEEIADGTLTRVLPDYALSTEPALWLIYPKSNVVSAKVRVFMDFL 289


>gi|167836576|ref|ZP_02463459.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 306

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 4/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G +  
Sbjct: 11  LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYC 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
             T++ Y ++   +  L ++  +P G LRI + + L ++++  + L EF   YP + +++
Sbjct: 71  DATAQPYRQVVEARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFHRYPKVSVEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++  +DI  +  D  IRL   +    +  R    +     A P YL     P  + +L
Sbjct: 130 RYEDHLVDIVKERLDAGIRLADRLHPGMVGVRIAPALTCALVATPGYLAQHGTPAKVADL 189

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            +H  I F    PK      W
Sbjct: 190 ARHMCIRF--RFPKSGRLHKW 208


>gi|328676170|gb|AEB27040.1| Transcriptional regulator [Francisella cf. novicida Fx1]
          Length = 298

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 141/291 (48%), Gaps = 19/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
              FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT +G  L 
Sbjct: 12  FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71

Query: 68  RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                + ++++  + +L ES  K PSG L+I+T+    QN+L   +KE+   +  ++I++
Sbjct: 72  NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++ K  +   + AD  + +   P +   ++ RK+ T      A+P Y+     P +I +
Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--DIVARKIATTRYVLCASPAYINKNGSPSNISD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242
           L  HN I     +         L  + +    P+   S +  N+ +  ++ CVL   GIA
Sbjct: 189 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +YIVKD   N  L+ +++D       +Y  YP+      K+K F + +
Sbjct: 241 QFHEYIVKDEIRNGQLIELLKDDFLDEQDIYIYYPKNKFVQPKVKEFVSLV 291


>gi|255318698|ref|ZP_05359925.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262378121|ref|ZP_06071278.1| transcriptional regulator [Acinetobacter radioresistens SH164]
 gi|255304196|gb|EET83386.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262299406|gb|EEY87318.1| transcriptional regulator [Acinetobacter radioresistens SH164]
          Length = 293

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 137/310 (44%), Gaps = 34/310 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L+ F V+AR+ + T+ A  + +  S++SR+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLQFFLVLARAKTLTNTARIIGVEHSTVSRRIQALELALGTPLFKREATGYELT 60

Query: 61  EQGSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            +G  L  RV      ++E   +++++      G++RI T    G   L   L E    Y
Sbjct: 61  LEGLALVPRV-----EQMEQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLAKLLAELSKQY 115

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I LI   K I +S   AD  I + +P +S   I  +L    +  Y +  YL     
Sbjct: 116 PLLTIDLIPVPKMIKLSHREADIVISIDRP-KSGPYIITRLSDYCLKIYGSKDYLAASSP 174

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VNSY 228
              +++L +H  + +                +D  I  P + CL+            +S 
Sbjct: 175 IHQLEDLKQHRFVNY----------------IDDLIYSPELYCLERLPLQLSASFRSSSI 218

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           L+       G+G+A+LP ++  + P L +++   +    T +      L++  ++K   +
Sbjct: 219 LAQQIAVSAGAGLAILPKFLADEQPELEQVLHKEVRFIHTFWMLTLVDLQHEPRIKLVWD 278

Query: 289 FIFLKARDWK 298
           F+  +A  ++
Sbjct: 279 FLRTQADKYQ 288


>gi|206561031|ref|YP_002231796.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198037073|emb|CAR52994.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 311

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 124/288 (43%), Gaps = 12/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L   ++++S  +  LET +G +L +R  R + LT  G+ 
Sbjct: 5   DQVRIFLQVAEMGSFIKAAHALDAPRATVSAAVQQLETALGTRLLHRTTRQVQLTADGAL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +      +       G+L +     + + ++   L      YP +Q+ 
Sbjct: 65  LLERGRRLLAEADELDRLFRRRDHDVVGRLNVDVPSRIARRVVAPALPSLFRRYPKLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P     
Sbjct: 125 LGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFTLINCASPDYLRECGVPEHPDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241
           L  H     G   P    +  W    D   G+ R+  L     VN+  + +  C+ G G+
Sbjct: 184 L-AHGHWAIGYASPTTGRELGWEYCAD---GQRRVLTLPSRVIVNNAETYIASCIAGMGL 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +P + V+    +  LV +M         V   YP     + +L AF
Sbjct: 240 IQIPRFDVEHLLASGALVDVMPGHRAEPMDVSAVYPHRRHRSRRLNAF 287


>gi|148557931|ref|YP_001257231.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148369216|gb|ABQ62088.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840]
          Length = 305

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H
Sbjct: 7   MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 67  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P +I++L 
Sbjct: 127 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP G      LQ NS   + +  + G GIA    +
Sbjct: 186 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 239

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 240 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 286


>gi|145631679|ref|ZP_01787442.1| lysR-family transcriptional regulator [Haemophilus influenzae
           R3021]
 gi|319897817|ref|YP_004136014.1| lysr-family transcriptional regulator [Haemophilus influenzae
           F3031]
 gi|144982702|gb|EDJ90238.1| lysR-family transcriptional regulator [Haemophilus influenzae
           R3021]
 gi|317433323|emb|CBY81699.1| LysR-family transcriptional regulator [Haemophilus influenzae
           F3031]
          Length = 295

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 125/269 (46%), Gaps = 12/269 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L VF  V  +GSF+ AA+QL ++ S++SR +  LE ++G+ L  R  R L LT
Sbjct: 1   MKTTSEELTVFVQVVENGSFSRAAKQLSMANSAVSRVVKRLEEKLGVNLINRTTRQLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++   +   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGLQYFRRVQKILQDMAAAEAEMLAVHEVPQGILRVDSAMPMVLHLLVPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+ L+     I++     D A+R  + +  S L  R L   H    A+P YL     P
Sbjct: 121 HIQLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSHFRVIASPDYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGS 239
            S + L  H  + F +  P  +  +  L     P    +IS     S   I++  C+ G 
Sbjct: 180 QSTEALANHQCLGFTE--PSSLNTWTVLDAQGNPY---KISPHFTASSGEILRSLCLSGC 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFT 268
           GIA L D++V ++     I E  + P  T
Sbjct: 235 GIACLSDFLVDND-----IAEGKLIPLLT 258


>gi|104783527|ref|YP_610025.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95112514|emb|CAK17241.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 315

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA+ GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRESHPDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+  D+  +  D +I L   +  S  + ++L   +    A+P Y+          +L
Sbjct: 126 TMANRVPDLLDEGYDVSIVLASELPDSGFVSQRLGITYSIVCASPEYVARHGTAHKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
            KH  +    ++   +    WL   D P G+  +    S  QVNS  ++        G+ 
Sbjct: 186 LKHACLR---MVSPVIPLEKWL--FDGPEGQEMVNITSSPFQVNSADAMKTAIRSSMGVG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y   D   + +LVRIM +       +Y  YP       K+K +  ++
Sbjct: 241 VLPIYSAIDGLRDGSLVRIMPEYRLQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|114562611|ref|YP_750124.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333904|gb|ABI71286.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 328

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 133/281 (47%), Gaps = 25/281 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F+ +  +GS   AA  L+L +S++SR++  LE  + +KLF+R +R +TLT  GS 
Sbjct: 24  EDIALFHRIVETGSILEAANLLNLPKSTVSRRLQSLEESLNLKLFHRQSRAITLTSAGSH 83

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLR-----IATTIDLGQNLLQGNLKEFLLLYP 120
            +  T  +   L+ T  ++ ++  + +G LR     I   +D+   +       F+   P
Sbjct: 84  FYEKTLVMLADLDRTLSDITDNKAELTGHLRILIFPIPQIMDIVSKIFA-----FMDENP 138

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +  I++I   + +D+  +  D A  + +      ++ + +++  M  +A+P YL     P
Sbjct: 139 NCSIEIITSTEPLDMVRNNIDIAFMVNETFSELDMVAKPVISEDMCFFASPEYLTKAGMP 198

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV---- 236
           +++ ++++HN I F    P      N     + P+    +  ++ N   + +Q       
Sbjct: 199 VTLSDIEQHNSILFR--FP------NGKTFSEVPLANDAMQAVKGNLCTNSIQLAYEATK 250

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           LG GI  LP  +  D+     LVR+  D+   +  V+  YP
Sbjct: 251 LGRGIGYLPQKLCHDDVEQGELVRLFNDLAPYTGVVFLVYP 291


>gi|114561995|ref|YP_749508.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333288|gb|ABI70670.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 299

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 128/291 (43%), Gaps = 20/291 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L +F  VA+  SFT AA  L +S+  +S QI  LE EVG  L  R  R + LT QG 
Sbjct: 12  FERLFLFSEVAKQLSFTEAAASLGISRGYLSEQIRQLEKEVGRPLLIRTTRSVRLTPQGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +     +V   L      ++  +   SG++ I     L Q  L     EF  L+P +  
Sbjct: 72  MILSSMGQVKADLLMLDKRIRHDNDDISGRISITAPSQLTQRHLLNICHEFTQLHPQVHF 131

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +       D++ +  D A R    P Q  +++ +KL        AAP YL+    P SI
Sbjct: 132 SIDCSYTLHDLTRNDFDLAFRATATPPQ--NMVAKKLFDYQQICCAAPAYLQQHGTPDSI 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           ++L  H  +T         E  +W         +P +  SCL VN    + Q  +LG GI
Sbjct: 190 EDLHHHQCLT-------ATEQTHWTFN-----AQPILINSCLSVNDNHMLKQLALLGRGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + P+Y+V        L  I+      + T Y  +P+ ++ + +L +F  F
Sbjct: 238 IVGPEYLVDKEIQAGTLQAILTTETMNASTAYLIHPQLVQQSARLSSFIQF 288


>gi|299770577|ref|YP_003732603.1| putative transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700665|gb|ADI91230.1| putative transcriptional regulator [Acinetobacter sp. DR1]
          Length = 296

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 131/274 (47%), Gaps = 8/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR GSFT AA ++ +SQS++S  I GLE  +G+ L  R  R ++ T  G
Sbjct: 6   NYNDLYAFLMVAREGSFTKAAGKMGISQSALSHTIRGLEERLGMLLLTRTTRSVSPTAAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  S  + +++     L     +P+G +RI  +    + +L   LK+    YPD+Q
Sbjct: 66  ERLKQTISASFDQIDNELSLLTSFRDQPAGTVRINASSHAIREVLIPKLKKIAGDYPDVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI  +  D  +R    +    +  R    + M   A P Y +    P + 
Sbjct: 126 VELTANSGMVDIVAERFDAGVRFGSRVADGMIAVRISPDVKMAVIATPAYFEQYGIPNTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
           ++L  H  I  G  +      + W    D    + +I    + N    I++    G G+A
Sbjct: 186 KDLINHQCI--GYRLTTQGSVYAWEFVKDGQETKIKIQGQWIFNESYDIVEAVRAGFGLA 243

Query: 243 LLPDYIVKDN---PNLVRIMED--VITPSFTVYF 271
            +P+ +++++     L++++ +  +  P + +Y+
Sbjct: 244 YIPEDLIREDLKEGTLIQVLAEYSIQFPGYHLYY 277


>gi|92112283|ref|YP_572211.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91795373|gb|ABE57512.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 307

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 130/297 (43%), Gaps = 28/297 (9%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L++   +A SGS   A   L +S +++ R++  LE+ +G++LF RH  G   T  G 
Sbjct: 22  WEDLKIVQAIADSGSLAGAGRTLGISHATVFRRLGALESRLGVRLFERHRTGYVPTLAGD 81

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    + V   +E  +  L     + SG LR+ TT  L   +L   L  F   YP I +
Sbjct: 82  DLATTAARVALDIEAVERRLMGRDARLSGTLRVTTTDTLLMGMLSDELAGFQRTYPHIVL 141

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQS--SSLIQRKLVTIHMHAYAAPHYLKNC-REPL 181
           ++ + N+  D+S   AD AIR   P  +   +LI R++  I     A   Y+  C RE  
Sbjct: 142 EVEVSNRTYDLSRRDADVAIR---PTSAPPETLIGRQVGQI-----AQAVYVSRCHRETS 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
                D H       L    +E +     VD         C   V+S L ++     G G
Sbjct: 194 GWVGPDPH-------LGYPVLERWMARQGVD-------AQCRYHVDSMLGMLAGVRSGMG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
             +LP Y+     +LVR  E +      ++      L+NT +++A   ++   LKAR
Sbjct: 240 RGVLPCYLADMADDLVRASEPLPELQTELWLLTHPDLRNTARVQALFAYLSDSLKAR 296


>gi|146305106|ref|YP_001185571.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145573307|gb|ABP82839.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 317

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 137/304 (45%), Gaps = 37/304 (12%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF   AR  SFT AA +   SQ +IS+QI  LE ++ ++LF R  RGL LTE G  
Sbjct: 11  DSLRVFESAARLLSFTAAANEQGSSQPAISQQIKRLEQQLAVRLFDRVHRGLVLTEAGEL 70

Query: 66  LHRVTSEVYHKLET---TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           L R   E  H L++     +  Q+  V     L++AT        L   L+ F  L+P++
Sbjct: 71  LLRYVQEGLHSLDSGLQAVVARQQHEV-----LQVATDFAFAAYWLMPRLQRFHQLHPEV 125

Query: 123 QIQLILDNKD--------IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
            + L+   +D        ID+++ + D   +        SL+   L    +    +PH L
Sbjct: 126 DVSLVTTERDLGGNLPGEIDVAISFGDGRCK-----HGESLL---LFGEEVFPVCSPHLL 177

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIG---EPRISCLQVNSYL 229
              REP  +        +    L P+     NW A   V R +G    P    L+ ++Y 
Sbjct: 178 HG-REP--VDSAALLARLPLLHLRPEARA--NWFAWDGVFRALGIAEPPSAGALRFDNYT 232

Query: 230 SIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            ++Q  + G G+A+   Y+V +      LVR+++  I  ++  Y   PE  +    ++ F
Sbjct: 233 LLIQAAIAGQGVAIGWRYLVDELLAQGLLVRMLDTSIRSAYGYYVVMPERKRRARLVRCF 292

Query: 287 RNFI 290
            +++
Sbjct: 293 VDWL 296


>gi|62178948|ref|YP_215365.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161615496|ref|YP_001589461.1| hypothetical protein SPAB_03267 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168240136|ref|ZP_02665068.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261251|ref|ZP_02683224.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194448484|ref|YP_002044363.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|224582172|ref|YP_002635970.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|62126581|gb|AAX64284.1| putative transcriptional regulator, LysR family [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364860|gb|ABX68628.1| hypothetical protein SPAB_03267 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406788|gb|ACF67007.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205340316|gb|EDZ27080.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205350095|gb|EDZ36726.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224466699|gb|ACN44529.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322713403|gb|EFZ04974.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 321

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 10/259 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALCGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I +   I R+L T      A+P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDI-NELYIARQLATNRRILCASPEYLERHGKPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243
           L +H+ +    +I +    F NW+ T  +     R++     NS   ++ + + G GI L
Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255

Query: 244 LPDYIVK---DNPNLVRIM 259
             ++ V    +   LVR++
Sbjct: 256 RSEWDVAQYIERGELVRVL 274


>gi|167561666|ref|ZP_02354582.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167568903|ref|ZP_02361777.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 308

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 139/294 (47%), Gaps = 18/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F +VAR GS + AA  L ++  + +++++ LE  +G +L  R  R  +LT +G  
Sbjct: 7   DDLTFFVLVARHGSLSAAARVLDVTPPAATKRLALLENRLGARLVNRTTRSFSLTSEGET 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R  + +   +   +  ++ S   P G LR+  T+  G+  +   + EF  L+P +++Q
Sbjct: 67  YLRYATRIVADIRQMEDAVRASRSVPRGLLRVNATLGFGRTAIAPLVSEFAKLHPQVEVQ 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+     D AIR  +P     +  R++++      A+P YL+    P S+ +
Sbjct: 127 LDVTDRPVDLVEGGYDLAIRFGEP-PDKRINARRIMSNRRFLCASPAYLQRHGAPASLAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L  H  I     + +  +D +    V R + +  I  ++V   LS      ++ + + G 
Sbjct: 186 LAAHRCI-----VHRQNDDAH---GVWRFVRDGEIEVVKVRGALSSNDGDIVLGWALDGH 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  ++ +    ++  L  ++ +   PS  ++  YP     + + +A  +F+
Sbjct: 238 GILIRSEWDLAKYLESGRLRLVLPEYALPSADLFVYYPSRQNQSARARALIDFL 291


>gi|158421870|ref|YP_001523162.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158328759|dbj|BAF86244.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 343

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 128/290 (44%), Gaps = 15/290 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R+   VA + S   AA Q+ ++ S++ R++  +E  +G+ LF RH  G  LT  G 
Sbjct: 31  WDDFRLIKAVADARSLPAAAVQMGVNHSTVFRRLKQIEEALGVALFVRHRTGYALTPAGE 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++  +   V   + +   ++    + P+G+LR+ T   L  +LL   L  F    P +++
Sbjct: 91  EVVALAERVDADITSVTRKIAGRELAPAGELRVTTNDSLLVHLLMPMLARFREACPSVRL 150

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L N+ +++S   AD AIR        +L+ R++  I    Y       +     +I 
Sbjct: 151 DVVLGNQALNLSKRDADVAIRASD-TPPDNLVGRRVARIGWALYGLARRFPSAD---AIA 206

Query: 185 ELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240
           ++D    + ++ GD        F  +  V   +    P     +VN+   + +    G G
Sbjct: 207 QMDPAAEDWVSLGD-------GFGGMKVVKDTLARIPPERIAYRVNTVFGLAEAIEAGLG 259

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   P +I    P LVR+       +  ++      L++  +++ F +F+
Sbjct: 260 IGYAPCFIADPRPALVRLAPPEPAYAADLWLLTHPDLRHAARVRVFLDFM 309


>gi|283785539|ref|YP_003365404.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282948993|emb|CBG88596.1| LysR-family transcriptional regulator [Citrobacter rodentium
           ICC168]
          Length = 305

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 141/300 (47%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F +VAR   F   A+++ +S + +S++I+ LE  + + L +R  R +++TE+G +
Sbjct: 8   NDLRIFMLVARRAGFAAVAQEMGVSPAFVSKRIALLEQSLNVTLLHRTTRRVSITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    EL  +   P G LRI ++   G+ ++   L      YP ++++
Sbjct: 68  IYAWAQRILCDVDQMLDELSAARQVPQGMLRIISSFGFGRRVVAPALSALAKQYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + ++ +D++ +  D  IR+   I + +LI RKL T +    A+P +L     P  + E
Sbjct: 128 FDVADRLVDLANEGVDLDIRIGDDI-APNLIARKLGTNYRILCASPAFLARYGTPKQLNE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L  +  +   +               D P G  ++        ++V   LS      + Q
Sbjct: 187 LSAYPCLVIKER--------------DHPFGVWQLQSKEGQHAIKVTGALSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V DN    +LV ++ +   P+  ++  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVCDNIASGHLVHLLPEYYQPA-NIWAVYVSRLAASAKVRITVEFL 291


>gi|317054286|ref|YP_004118311.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952281|gb|ADU71755.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 306

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 123/288 (42%), Gaps = 10/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF      GS   AA +L+LS     R ++ LE  + ++L  R    L LT+ G    
Sbjct: 7   MSVFVAAVEEGSIAAAARRLNLSPVMAGRYLTSLEEGLSVRLLERSTHQLNLTDAGGSYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   + E     + P G LRIA  +  G   L   +  F+  YP + IQL 
Sbjct: 67  VKAKRILSDIREAEQEATAKHISPQGSLRIAAPVTFGTQYLAPLIAAFMRDYPQVDIQLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  +  D AIR+ + +  S L+ R++    + A A+P YL +   PL  +EL 
Sbjct: 127 LLDRFIDLVDEGVDLAIRIGQ-LPDSDLVARRITDYRLLACASPRYLADAGRPLLPEELA 185

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
           +H LI +       M    W        + +    C  + +  +IM    L  +GI   P
Sbjct: 186 RHVLIGYSG----TMTTSPWQFTAASGEVKQIEAHCRFLANNTAIMVALALQDAGIVYGP 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++++       LV ++ D   P  +++     A     K + F  ++
Sbjct: 242 EFVMQPHLQTGELVEVLPDYRCPVISLFAVTLNAKYVNSKTRLFIQYL 289


>gi|209517867|ref|ZP_03266701.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501700|gb|EEA01722.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 330

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 15/289 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   A  GS   AA    +S  + S  +  LE ++G++LF+R  R L++TE+G +L   
Sbjct: 9   IFVRAATLGSLRSAAVDQGISPQAASHAVMQLEKDLGVRLFHRTTRKLSVTEEGQRLLDS 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  L +   E + S  +  G LR++    LG  +L    +EF  LYP++Q ++ LD
Sbjct: 69  VKPALATLSSALDEARRSKEEVGGVLRVSAARALGLPVLWPYFEEFQKLYPNVQFEVQLD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+  D +D   R   P    S I R+LV I +   A+P Y++    P +I+EL +H
Sbjct: 129 DQFTDLVTDRSDVGFRGGPPPSGGS-IARRLVPIQLIVCASPEYIERNGAPRTIEELAQH 187

Query: 190 NLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
               +     G L        + +   D P      + L VN      Q  + G GI  L
Sbjct: 188 RCTGYRRANTGKLAQWQFRIGDEVVYRDVP------AALCVNDTEMETQAVLSGLGIGQL 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +       +  L+ ++   +T    +Y  Y    + + ++K F +F+
Sbjct: 242 GSFNATPHIRSGRLIPLLTRHVTEHGMIYIYYGHRTEQSLRVKTFIDFM 290


>gi|153839452|ref|ZP_01992119.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149747041|gb|EDM58029.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 307

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 94/189 (49%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G  
Sbjct: 5   NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I+
Sbjct: 65  FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSIK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+     D AIR  +P  S+ ++            A+P Y+    E  S  +
Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGANERILCASPEYVATHPELTSPAD 184

Query: 186 LDKHNLITF 194
           L +HN + +
Sbjct: 185 LTQHNCLCY 193


>gi|49085008|gb|AAT51245.1| PA3895 [synthetic construct]
          Length = 318

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT A++QL+ + + +SR ++ LET +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTEAGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+GKL++ +   +GQ+ +   +  +   Y D+   L
Sbjct: 66  LLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+  D+  +  D AI +   +  S  I +++   +    A+P YL+    P    EL
Sbjct: 126 TMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPSEPSEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             H+ +    L+   +    WL   D P G+  +S      QVN   ++ +    G GI 
Sbjct: 186 ASHDCLR---LVSPVVPLDRWL--FDGPNGQEMVSIGASPFQVNVGDAMTEAIRSGLGIG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y   ++     LVR++         VY  YP       K+K +  ++
Sbjct: 241 ILPVYSAIEDLGKGTLVRVLPQHRLQQLNVYALYPSRQYLDAKIKTWVEYL 291


>gi|71734912|ref|YP_276123.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555465|gb|AAZ34676.1| probable transcriptional regulator, LysR family [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320327185|gb|EFW83199.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330880809|gb|EGH14958.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 328

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 15/244 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  SGSF+ A   L LS S++SRQI  LE  + + L  R  R L +TE G  +  V
Sbjct: 16  VFRQVVVSGSFSGAGRTLGLSPSAVSRQIDRLERILNVALVTRSTRNLFITESGQDVFNV 75

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            SE+    ++    ++ + V+P G LR+   + +G+ LL  ++ EFL +YP I++ L   
Sbjct: 76  ASEIASATDSLMGRIEAAMVEPEGLLRVTAPVTIGKILLSSSIAEFLRVYPKIKVDLNFT 135

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +DI  +  D ++R+        ++ RKL  +     A    + +   P   +++   
Sbjct: 136 DNIVDIYKEKFDLSVRITS-TPPHDMVARKLFDVEYLLVATTGEV-SFEIPSHPEDISST 193

Query: 190 NLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +IT     FG+ +     D+++          PR   L  N+  +++     G+G+ +L
Sbjct: 194 PMITPSDSFFGEEMTFNHTDYSYTVR-----STPR---LMANNSETLLGAIFSGTGVGVL 245

Query: 245 PDYI 248
           P+++
Sbjct: 246 PNFL 249


>gi|330821561|ref|YP_004350423.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327373556|gb|AEA64911.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 306

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 134/288 (46%), Gaps = 11/288 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  +G+F  AAE + ++   +SR I+ LE  + I+LF R  R ++LT++G + +  
Sbjct: 14  VFAAVVDTGTFAAAAEVIGMTPPGVSRAIARLEKRLKIRLFNRTTRSVSLTDEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE         +    G+LR+         +L   L+ F+  +P + +++I  
Sbjct: 74  VMPHLAGLEEAAAAASGDAAVVRGRLRVNLDPVCYGLVLGAPLERFMAAHPGLDVEVIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL--D 187
           +   D+ ++  D AI+  +P ++S+L+ RKL    +   AAP YL     PL  ++L  +
Sbjct: 134 DTVGDLVLEGFDLAIQFGEP-KASTLVARKLFDTGVVTVAAPAYLARHGRPLRPEDLAGE 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H +I F +  P+    + W     R   + E R   L VN   + ++ CV G G+A + 
Sbjct: 193 GHRVIEFRN--PETGRPYRWEFRRKRRHLVVEAR-GRLTVNDPAAHVRACVAGLGVAQML 249

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V+       LV +  D     F +Y  YP       + +AF +F+
Sbjct: 250 AFAVEPMIAAGQLVNLFPDWADERFPLYAYYPSRQHLPARTRAFLDFV 297


>gi|171316746|ref|ZP_02905958.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171098096|gb|EDT42911.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 309

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT  G+ 
Sbjct: 5   DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTADGAL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +      +       G+L +     + + ++   L      YP +Q+ 
Sbjct: 65  LLERGRRLLAEADELDRLFRRRDRDVMGRLNVDAPSRIARRVIAPALPLLFRRYPKLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P     
Sbjct: 125 LGSTDRTIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFALINCASPDYLRECGVPEHPDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H     G   P    +  W    D     +  P  S + VN+  + +  C+ G G+ 
Sbjct: 184 L-AHGHWAIGYASPTTGRELGWEYCADGGQHTLALP--SRVIVNNAETYIASCIAGMGLI 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P + V    D+  LV +M         V   YP     + +L AF
Sbjct: 241 QIPRFDVVHLLDSGALVEVMPGHRAAPMDVSAVYPHRRHRSRRLNAF 287


>gi|172062227|ref|YP_001809878.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994744|gb|ACB65662.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 302

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 19/254 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   GS T  A  L  + S +SR I+ LET +G++L  R  R L+LTEQG    
Sbjct: 11  VEAFVTVIEKGSMTAGAVALGSTPSVLSRAITRLETRLGVQLLRRSTRRLSLTEQGRLYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +   +  ++  +  +Q      +G +R++     G   L   L++F   +P+++++L 
Sbjct: 71  EQSRAAFLLIDDAERAIQGHGGTLTGHVRLSVPTTYGHYRLPPLLRQFTQQHPEVRVELN 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+++D+  +  D AIRL + +  S L+ RKL    +   AAP Y+     P ++ +L 
Sbjct: 131 IANRNVDLVAEGFDLAIRLGE-LPDSGLVARKLEDAALCLVAAPEYVARAGMPENVADLA 189

Query: 188 KHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H  + F     G + P       +D +WL         P  +    +  L ++     G
Sbjct: 190 HHLCLPFMLPSSGRIAPWVFRDDGQDIDWL---------PPSNVAVSDDVLGVVSMAQSG 240

Query: 239 SGIALLPDYIVKDN 252
           +GI    D+IV+D 
Sbjct: 241 AGICQTYDFIVQDR 254


>gi|254228071|ref|ZP_04921501.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262395951|ref|YP_003287804.1| transcriptional regulator LysR family [Vibrio sp. Ex25]
 gi|151939567|gb|EDN58395.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262339545|gb|ACY53339.1| transcriptional regulator LysR family [Vibrio sp. Ex25]
          Length = 293

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 135/274 (49%), Gaps = 11/274 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F  V + GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT +G  
Sbjct: 4   DDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNKGDA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   +V   L++   +    S++  GK+++    +  +  LQ  L EF   YP +++ 
Sbjct: 64  YYQDLQKVLTLLDSANQQASNESIEVRGKIKLGLLPETYEP-LQPILFEFQDQYPQVELD 122

Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++N  ID+     D A+     +  S ++ RK++T+     A+P+YL+    P +++
Sbjct: 123 IRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPATLE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  I F    P    D  W         +P++     N+   I    VL  GI+ +
Sbjct: 182 ELSDHQCICFR--WPNGNVDNLWHFQEQNVALKPKLIS---NNIGFIKSSTVLDRGISYI 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           P  +VK   ++  LV+++        T +  YP+
Sbjct: 237 PKLLVKNELESGALVQVLSQYAVTEETGWLLYPK 270


>gi|257487935|ref|ZP_05641976.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331008625|gb|EGH88681.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 303

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 139/292 (47%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR  SF  AA +L +S + +S+++  LE  + + L +R  R +++TE G +
Sbjct: 7   DDLNVFVHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMSVVLLHRSTRQVSITEDGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++   G+  +   L E   LYP + I+
Sbjct: 67  VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALYPKLDIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YLK+   PLSI E
Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGVPLSIGE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H+ +    +I +    F  +  ++ P G   +     L  N      Q+C+ G G+ 
Sbjct: 186 LANHDCL----VIKERDRPFG-IWHLNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVL 240

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
           L   + V+ +    R+++  + P +     ++  +   L ++ K++    F+
Sbjct: 241 LRSLWDVRTDLAEGRLVQ--MLPEYRQDADIWAVHTSPLMSSAKVRVTVEFL 290


>gi|241203241|ref|YP_002974337.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857131|gb|ACS54798.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 283

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 17/246 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  L++F  +AR G+   AA +L L+Q ++ R++  LE  +G  LF R   G  LT++
Sbjct: 1   MEWSDLKLFLAIARFGTLGAAARRLGLTQPTMGRRLRALEASLGQTLFQRTTDGFVLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ +      +  +    +  L   S +  G LR++++   G ++L   L EF  ++P +
Sbjct: 61  GAAVFAGAERIEEEALAMERSLAGGSRQLDGLLRLSSSDWFGAHVLSPVLAEFSQVHPKV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY---AAPHYLKNCRE 179
            ++L+ D++ + +S   AD   R+ +P   + ++ RKL+ I    Y    APH       
Sbjct: 121 VVELLTDSRLLSLSRREADLVFRI-QPFTEAEIVSRKLIRIEYGLYISRGAPHPEAGDGA 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              +  +D+     FG+     M D  WL    R + +  I   + NS       C  G+
Sbjct: 180 GARLVTMDE----AFGE-----MPDVGWL---RRLLPQADI-VTRSNSRDVQAALCANGA 226

Query: 240 GIALLP 245
           G+A+LP
Sbjct: 227 GLAVLP 232


>gi|254246798|ref|ZP_04940119.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
 gi|124871574|gb|EAY63290.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
          Length = 327

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 123/249 (49%), Gaps = 8/249 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  + + L +F     +G  + AA +L L +S++S++++ LE  +G +L +R +R   LT
Sbjct: 21  LKVNLNDLYLFVQAVEAGGMSAAARRLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLT 80

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G++          + +  +  +   + +P+G +RI +++ + Q++L   L    + +P
Sbjct: 81  PVGAEFFEHARAAVIEADCARDAVLRQAAEPAGVVRITSSVPVAQHILAPCLPVLAIAHP 140

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + +Q+   ++ +DI+ +  D A+R    P+  S+L+QR L    +   AAP YL     
Sbjct: 141 KLLLQIHASDRLVDITQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPAYLARAGT 200

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H+ +  G   P+          VD     PR+  LQ +    ++Q    G 
Sbjct: 201 PDTPADLAQHDGLHPG---PQPWRLQRAGDAVDV---TPRLR-LQADESTLLLQAATAGL 253

Query: 240 GIALLPDYI 248
           G+A LPD+I
Sbjct: 254 GLACLPDWI 262


>gi|194365944|ref|YP_002028554.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348748|gb|ACF51871.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 297

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 22/297 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +R F  +    SFT A+E L L +++++  I  LE  +G++L +R  R +  T +G 
Sbjct: 4   FTAMRAFVRIVERRSFTRASEDLGLPRATVTDAIKALENRLGVRLLHRTTRLVVPTLEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +   ++  V P G LRI     LG++LL  +L +FL  YP+I++
Sbjct: 64  AFYGRCLRLIADMDDAEAAFRD--VPPRGPLRIEVHGTLGRHLLFPHLPDFLQRYPEIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D+  +  D A+R+   +  S L  R+L  +     A+P Y++    P SI 
Sbjct: 122 EVNEGDRYVDLLREGVDAAMRVGT-LADSDLAARRLTMLREVTVASPSYVQARGVPGSID 180

Query: 185 EL-DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            L D H ++ +     G LIP   +    +  V  P      + ++V+   + +   + G
Sbjct: 181 ALQDGHQMVGYRSSATGQLIPLEFQQTGQIRYVPLP------ARVRVSGADAFLGAALAG 234

Query: 239 SGIALLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI   P Y  + NP      LV ++ D       +   YP     + +L+ F +++
Sbjct: 235 LGIIQAPRY--RMNPYIARGQLVELLPDAPPTPSPLSLVYPRNRTPSPRLRVFIDWV 289


>gi|17989410|ref|NP_542043.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. 16M]
 gi|225628646|ref|ZP_03786680.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|260564324|ref|ZP_05834809.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M]
 gi|260568495|ref|ZP_05838964.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|17985286|gb|AAL54307.1| transcriptional regulatory protein, lysr family [Brucella
           melitensis bv. 1 str. 16M]
 gi|225616492|gb|EEH13540.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|260151967|gb|EEW87060.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M]
 gi|260155160|gb|EEW90241.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
          Length = 325

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H
Sbjct: 27  MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 86

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 87  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 146

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P +I++L 
Sbjct: 147 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 205

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP G      LQ NS   + +  + G GIA    +
Sbjct: 206 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 259

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 260 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306


>gi|78045600|ref|YP_361775.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926178|ref|ZP_08187536.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|78034030|emb|CAJ21675.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543360|gb|EGD14785.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 295

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 118/248 (47%), Gaps = 14/248 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D + L  F +VA +     A+     S++++SR+I+ LE ++G++L  R ARGL LTE
Sbjct: 4   SMDLNALIDFSLVAANQGLGKASRASGRSKATLSRRITELEEQLGVRLVERSARGLKLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLYP 120
            G +L   T     ++       +E    P G+LR+A+ +   Q L  G++  +F   YP
Sbjct: 64  AGQQLMERTQVPLSEVAEAMTAAREGLSSPRGRLRVASPVLFSQ-LAMGHIGADFCAAYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++++ +++ +D+  +  D AIR+  P   S L+ R      +   AAP         
Sbjct: 123 EITLEVVAEDRTVDLMEEQFDVAIRI-NPSPDSRLVGRCFAKDRLVVVAAP--------- 172

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI       +     ++    E   W     R + EP I  ++ +S+L +    + G G
Sbjct: 173 -SIAMPSGDAVHPVPGVVMSSFEPTTWTLDGGRLVLEP-IPRMRFSSFLMVRDAVIAGGG 230

Query: 241 IALLPDYI 248
           +AL+P  I
Sbjct: 231 VALIPQSI 238


>gi|94314585|ref|YP_587794.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93358437|gb|ABF12525.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 306

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 123/283 (43%), Gaps = 16/283 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V   GS + A   L ++Q ++ R I  LE+ +G+KLF R   G   TE   
Sbjct: 11  WEWYRTFLQVLEVGSLSAAGRALGITQPTVGRHIDSLESALGLKLFTRSFDGFAPTEAAH 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    + +       +           G +R+  +  +G  +L   L      +P++ +
Sbjct: 71  ELKPYAASIAATAAALRRVASSHGAGVRGTVRLTASEVIGAEVLPPILAALRDAHPELVV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L N+  D+    AD AIR+ +P+Q  +LI R +  I +  +A   YL+    P S  
Sbjct: 131 ELVLSNQPDDLLRREADIAIRMFRPVQ-GALIARHVGGIEIGLHAHSRYLQAHGVPGSTS 189

Query: 185 ELDKHNLITF---GDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           EL +H LI F    D I +    F   W  ++            + +S L+ +     G 
Sbjct: 190 ELSRHALIGFDQENDFIRRLQSKFKPFWRDSL----------AFRSDSDLAQLGAIRAGF 239

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           GI +    +   +P LVR++ +  + +   +    E L++  +
Sbjct: 240 GIGVCQAALAARDPQLVRVLPEQFSVTLDTWVAMHEDLRDNTR 282


>gi|170701828|ref|ZP_02892759.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133245|gb|EDT01642.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 297

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 130/271 (47%), Gaps = 5/271 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR  SFT AA +L +SQS++S+ +  LET +G++L  R  R ++ TE G +
Sbjct: 7   NDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLETRLGVRLLTRTTRSVSTTEAGEE 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +  +    ++E     + +   KP+G +RI  T      ++   L+  L  YPDI+++
Sbjct: 67  LFQAVAPRIDEIEMKLAAVSDFRDKPAGVVRITATEHPIDTIIWPKLRRVLPDYPDIRVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D    +I  +  D  +R    +    +  R    I M   A+P YL   + P + Q+
Sbjct: 127 LSVDYGLSNIVEERYDIGVRYGDQVAKDMIAVRISPDIRMTMVASPAYLDGRKPPKTPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  H+ +T      K +  + W     R   + R++  +  N+   ++Q  + G GIA +
Sbjct: 187 LLDHDCVTLRLATAKGI--YAWELKKGRNEIQARVNGRITCNTQPHMVQAALDGFGIAFV 244

Query: 245 PDYIVKDN--PNLVRIMEDVITPSFTVYFCY 273
            + IV D+     +RI+     P F  Y  Y
Sbjct: 245 TEDIVLDHVRSGQLRIVMPDWCPVFPGYHAY 275


>gi|149911851|ref|ZP_01900452.1| putative transcriptional regulatory protein (LysR family)
           [Moritella sp. PE36]
 gi|149805056|gb|EDM65081.1| putative transcriptional regulatory protein (LysR family)
           [Moritella sp. PE36]
          Length = 301

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 136/304 (44%), Gaps = 21/304 (6%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR    F  V   GSF+ AAE   +  SS+SR+++ LE  +G  L  R  R ++LTE 
Sbjct: 2   DQLRAIKYFVKVVEHGSFSKAAELFSVPPSSLSRRVADLEKSLGATLLKRTTRTVSLTEI 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++  SEV   L  +   ++     P G L I+  +  G+ +L   L EF  LYP I
Sbjct: 62  GQIYYQQVSEVLSLLAYSDETVRNYQATPMGVLNISAMVGFGERILLPLLDEFRELYPQI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + + L +    +  D  D AIR         ++  KL+  +    AAP YLK    P++
Sbjct: 122 TLNVSLSDDLSTLGRDEVDLAIR-GGYAPDERVLAIKLMENNFIVVAAPRYLKTHGVPVN 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGS 239
             EL +H  + F    P       W+  +D    +  +S  QV   N+   +++  V G 
Sbjct: 181 AMELKQHKGLYFK--TPSG--PTPWICEIDNQRQD--VSAEQVLISNNGKWLVEKAVAGL 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPS--------FTVYFCYPEALKNTGKLKAFRNFIF 291
           GI ++P + ++       + E  ITPS          ++  Y +      K+KA  +F+ 
Sbjct: 235 GILMMPRWALEPYIESGELTELTITPSIDITRKANLGIFLLYQKQRYQVPKIKAAVDFLV 294

Query: 292 LKAR 295
            + +
Sbjct: 295 ERVK 298


>gi|116691527|ref|YP_837060.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170736470|ref|YP_001777730.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116649527|gb|ABK10167.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169818658|gb|ACA93240.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 309

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 121/269 (44%), Gaps = 9/269 (3%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     +++
Sbjct: 25  QLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTDQMR 84

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
           E    P+G+LRI        +     L  F   YP IQ+ +I++++ +D   +  D A +
Sbjct: 85  ELRATPTGRLRIQMLPGFALDHFGAPLAAFNQRYPGIQLDIIVNDRVVDPVEEGFDIAFQ 144

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
           +  PI S SLI+R+L T+     AAP Y+     P   ++L +H    +     +     
Sbjct: 145 IFPPI-SESLIERRLFTVRRLFCAAPAYVDAHGAPQHPRDLLQHTTALYSGYPSRN---- 199

Query: 206 NWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261
            W  T    + E  +   ++ NS   + +Y + G G+  LP  +  D      LV I+ D
Sbjct: 200 RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPILTD 259

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +    YP   +   K++A   F+
Sbjct: 260 YQLAPLSFAAVYPATQRQALKVRALVEFL 288


>gi|330891141|gb|EGH23802.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 303

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 139/292 (47%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR  SF  AA +L +S + +S+++  LE  + + L +R  R +++TE G +
Sbjct: 7   DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMSVVLLHRSTRQVSITEDGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++   G+  +   L E   LYP + I+
Sbjct: 67  VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALYPKLDIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YLK+   PLSI E
Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGVPLSIGE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H+ +    +I +    F  +  ++ P G   +     L  N      Q+C+ G G+ 
Sbjct: 186 LANHDCL----VIKERDRPFG-IWHLNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVL 240

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
           L   + V+ +    R+++  + P +     ++  +   L ++ K++    F+
Sbjct: 241 LRSLWDVRTDLAEGRLVQ--MLPEYRQDADIWAVHTSPLMSSAKVRVTVEFL 290


>gi|332717296|ref|YP_004444762.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325063981|gb|ADY67671.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 298

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 131/288 (45%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A  GSF  AA +L +S S+I + ++ LE  + ++LF+R  R LTLT +G+   
Sbjct: 7   LNAFVQTADCGSFAGAAARLGVSGSAIGKAVARLEERLAVRLFHRSTRSLTLTAEGALFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                ++ ++E  ++EL +    P G+LR+  ++ L   L+   +  F+  YP+I++ L 
Sbjct: 67  DRCRRIFSEIEAAELELSQIRQAPRGRLRV--SLPLIGMLMMPAVMAFMRAYPEIELDLD 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  +R  +  + S L+ R+          +P YL     P +  +L 
Sbjct: 125 FTDRLVDVIDEGFDAVVRTGE-ARDSRLMMRRAGAFSHRIVGSPDYLAARGVPSTPDDLL 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GSGIALLP 245
            H         P   +   W    D    E  +    V S L   Q C+   G G+A LP
Sbjct: 184 GHA--CHHHKYPSTGKLERWPMVADGAALELVLPVTSVASTLEP-QICLAEGGFGLACLP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + +++      LV ++ED +      +  +P     + K+ AF +F+
Sbjct: 241 QFAIREQLRRGRLVSVLEDYMQEVGAFHILWPANRHPSPKVSAFVSFM 288


>gi|298293997|ref|YP_003695936.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296930508|gb|ADH91317.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 307

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 131/282 (46%), Gaps = 8/282 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF  VA +GS + AA +L +++S  S ++  LE  +G  L +R  R L+LTE G  
Sbjct: 4   DGIAVFVAVAEAGSISEAARRLRIAKSVASDRLVELERSLGATLVHRSTRKLSLTEDGVA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S    +L+    +L E     +G LR++  +   +  L   L  FL  +P I++ 
Sbjct: 64  FLERASAALRELDAAAADLAERRGTLAGPLRLSAPVSFTRLHLGPALYPFLRAHPSIELT 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD++ ID   +  D  IR   P+  S L+  +L        AAP YL     P S+  
Sbjct: 124 LDLDDRRIDAQAEGYDGVIR-HGPMHDSRLVAWRLARSRRLLVAAPDYLARHGSPDSLAA 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H  I +     + + D+ ++    R +       L+VN+   +    V G GIALLP
Sbjct: 183 LNGHRGIFY---THRGIADWRFVMP-GRTVQVRAQVGLRVNNGEVMRDAAVAGLGIALLP 238

Query: 246 DYIVKD--NPNLVRIME-DVITPSFTVYFCYPEALKNTGKLK 284
            ++         ++++E   +T    +Y  +PE  + + KL+
Sbjct: 239 MFLAGAAIRAGSLQVVEVGAVTEEEFIYIAHPEGRRPSAKLR 280


>gi|224457902|ref|ZP_03666375.1| transcription regulator [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371324|ref|ZP_04987326.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875568|ref|ZP_05248278.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|151569564|gb|EDN35218.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254841567|gb|EET20003.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159944|gb|ADA79335.1| transcription regulator [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 298

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 142/291 (48%), Gaps = 19/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
              FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT +G  L 
Sbjct: 12  FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 71

Query: 68  RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                + ++++  + +L ES  K PSG L+I+T+    QN+L   +KE+   +  ++I++
Sbjct: 72  NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++ K  +   + AD  + +   P +  +++ RK+ +      A+P Y+     P +I +
Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--NIVARKIASTRYVLCASPAYINKNGSPSNISD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242
           L  HN I     +         L  + +    P+   S +  N+ +  ++ CVL   GIA
Sbjct: 189 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +YIVK+   N  L+ +++D       +Y  YP+      K+K F N +
Sbjct: 241 QFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLV 291


>gi|87120076|ref|ZP_01075972.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86164778|gb|EAQ66047.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 306

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 130/287 (45%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +++R+F  VA+  SFT AAE L + +S++S ++S LE  +GI+L  R  R + LTE G
Sbjct: 11  DLNQIRIFTHVAQLASFTKAAEVLGIEKSTVSAKVSQLEASLGIRLLERTTRSVRLTEAG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +  + L+     +   S +PSG +R     +L   +L   ++ FL  YP + 
Sbjct: 71  RDYLAYCEQALNTLQQGDDYIHSLSGEPSGTIRFCAPHNLIDFILSSVIEPFLTCYPKVN 130

Query: 124 IQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++   N D        D AIR  R  I+ +SLI R L         +P  L     P +
Sbjct: 131 LEIHQVNGDEGFLSGNYDLAIRNHRGEIKDTSLICRPLFESQWVFVISPKQLDEFGYPET 190

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L     I   +       D + +    +     R +   V++  +++    LG G  
Sbjct: 191 PEHLLSQPSIGLKNASTNKTYDPHLIWQDQKLNFRHRFA---VDNMRTVIASIKLGLGFG 247

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++P  +VK+      LV I++D++ P  ++Y  YP  +    KL  F
Sbjct: 248 MVPKNMVKEELAQGELVEIIKDIVIPPTSLYLIYPSRVGQPAKLIKF 294


>gi|332992516|gb|AEF02571.1| LysR family transcriptional regulator [Alteromonas sp. SN2]
          Length = 310

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 120/265 (45%), Gaps = 25/265 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L V   VA   S T AA  L +  ++ S  +  +E+ +G  LF R  R L L+  G +
Sbjct: 4   EDLIVILKVAEFRSITAAASSLDMRTATASAAVKRVESTLGSDLFIRTTRSLRLSAAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              V  +    LE  +  LQE +    G+LRI  + DLG+N++   L  F+  +  I ++
Sbjct: 64  YLPVCEQAITMLEHAKQNLQEDTGNIEGELRIGLSSDLGRNVIAPWLNRFMDEHTGISMK 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L + +ID   D  D A+R   P   +SL   K+  +     A+P YLK    P ++++
Sbjct: 124 LHLSDSNIDFYRDPVDIALRYGSP-NDASLYGFKICEVPRLLVASPAYLKQHGTPKTLED 182

Query: 186 LDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG--- 240
           L KHN + +   D+I    E    L   ++P+          N    + ++CV G G   
Sbjct: 183 LPKHNGLFYQLHDIIYNEWE----LTRNNQPVKIKMQGNRAANDGDMVRRWCVNGHGLAV 238

Query: 241 ---------------IALLPDYIVK 250
                          +AL+PDYIVK
Sbjct: 239 KSSLDMCDDLLNNRAVALMPDYIVK 263


>gi|221070133|ref|ZP_03546238.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220715156|gb|EED70524.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 309

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 126/288 (43%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS T AAE+L +S ++ SR +  LE  +G +L  R  R L LTE G   
Sbjct: 8   QIEFFVQVAELGSLTKAAEKLEMSNAAASRTLLALEERLGARLVERTTRRLWLTEVGQTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R  S +  ++   + E+ E++++P+G L + +++      +   L EF   YP + +Q+
Sbjct: 68  YRRCSAMLSEIAEAEAEVNEATLQPTGTLHVTSSVSFAMLHIAPALPEFQRRYPQLNVQI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              N+  D      D AIR R+    S++  RKL        A+P YL     P    +L
Sbjct: 128 TAANRYFDFIEAGIDVAIRTREYESDSNITVRKLARTWRVMAASPGYLAANGVPKHPDDL 187

Query: 187 DKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H ++ +     P  +         D  I     S    N    I+   + G GI + P
Sbjct: 188 KSHRMLIYNLAKDPTVLHLSQGQDHRDVEIS----SAFDSNEGQVIVSAGLAGLGIVIQP 243

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            YI+ D      LV ++ D   P  T+   Y        K++ F +++
Sbjct: 244 LYIIHDEIVAGRLVPVLLDWALPPLTINIAYQSRRHLPAKIRVFTDYL 291


>gi|76812008|ref|YP_333519.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|76581461|gb|ABA50936.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
          Length = 773

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 4/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G + +
Sbjct: 478 LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 537

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPDIQIQL 126
             T++ Y ++   +  L ++  +P G LRI + + L ++++  + L EF   YP + +++
Sbjct: 538 DATAQPYRQVVDARDALNDARDEPEGLLRI-SALHLAKSVVTADVLAEFFRRYPKVSVEI 596

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++  +DI  +  D  IRL   +QS  +  +    +     A P YL     P  + +L
Sbjct: 597 RYEDHLVDIVKERLDAGIRLADRLQSGMVGVKIAPALTCALVATPGYLAQHGVPSKLADL 656

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            +H  I F    PK      W
Sbjct: 657 ARHMCIRF--RFPKSGRLHKW 675


>gi|316936216|ref|YP_004111198.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315603930|gb|ADU46465.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           DX-1]
          Length = 304

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 13/251 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++R F  +A  GS +  A  L++ QS+++RQ+  LET +G  L  R  R +TLT +GS+
Sbjct: 9   ERIRTFVRIAERGSLSAVARDLNVGQSTVTRQLQELETAIGAPLLSRTTRRVTLTAEGSR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   L+    E   +S  P+G +RI+ T   G       +  F   YP+I I 
Sbjct: 69  YYARCVQILRLLDQAGDEALGASGAPAGTIRISCTASFGVLHASRLMFAFQDRYPEIGID 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  +  D A+RL  P+  SSL  R L        A+P YL     P   Q+
Sbjct: 129 FGLTDQRIDLVREGVDLALRL-APLTDSSLKLRPLGHSQRLLVASPDYLSVHGRPAVPQD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  H  I    ++     D   L   D+     P G      L+V+  L+  +  + G G
Sbjct: 188 LSSHQGIR---MVNVAGSDMLMLQGPDQQTHRVPFG----GRLRVDHGLAAREAMIAGRG 240

Query: 241 IALLPDYIVKD 251
           IA    ++V D
Sbjct: 241 IAAAHRWLVDD 251


>gi|115524094|ref|YP_781005.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115518041|gb|ABJ06025.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisA53]
          Length = 297

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 84/187 (44%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT AA +L LS S++S  +  LE  +GI+L  R  R +  TE G +L 
Sbjct: 10  LSAFVAVARERSFTRAAAKLGLSPSALSHTLRELEARLGIRLLTRTTRSVAPTEAGERLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +    ++E     L E   KP+G +RI       + +L   L   L  YPDI+++++
Sbjct: 70  ATVAPRLSEIEAELAGLSELREKPAGTIRITAGDHAAETVLWPALIGLLRDYPDIRVEIV 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            DN   DI     D  +R  + I    +  R    + M    +P Y      P   Q+L 
Sbjct: 130 ADNALTDIVTARFDAGVRFGEQIAKDMIALRIAPDMRMAVVGSPAYFAQRPRPKKPQDLT 189

Query: 188 KHNLITF 194
            H+ I  
Sbjct: 190 AHSCINL 196


>gi|221368980|ref|YP_002520076.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
 gi|221162032|gb|ACM03003.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
          Length = 298

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 27/297 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+LR F   A++GSFT AA+QL +S    S+ ++ LE  +G++L  R  R + LT  G  
Sbjct: 5   DELRAFVATAKTGSFTAAADQLGVSNRLTSKYVAELEKRLGVRLLQRTTRKVGLTPAGET 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   L+    E+   S   +G +R++  +  G++ + G L  F  L P + I 
Sbjct: 65  LLARAPALLDDLDDLLGEVSHGSRGFTGTIRVSAPVTFGEDYVGGMLGRFAALNPGLLID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L++   D++ +  D A R+ +  +  SL  RKL  +   A A+P Y+     P  +++
Sbjct: 125 LRLNDSFADLASEGIDVAFRVGQS-EMLSLKTRKLGEVRTVAAASPGYIAARGAPGRLED 183

Query: 186 LDKHNLITFGDLIPKCMEDFN------WLATVDRPIGEPRI----SCLQVNSYLSIMQYC 235
           L +H+          C+ D N      W    D   G  R        QVNS  +     
Sbjct: 184 LARHD----------CILDTNRRVPRRWTFLQD---GTERSVEIHGRFQVNSARAAADLA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + G GI   P + + +   +  LV ++E+       V   Y E      K++A  +F
Sbjct: 231 MAGLGICYAPRFALAEALRSGRLVPVLEEFGGAVAPVSAVYLEGRSLPRKIRALIDF 287


>gi|118764448|emb|CAL80827.1| LysR:LysR substrate binding domain [[Polyangium] brachysporum]
          Length = 344

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V  +GSF+ AA  L L+ +++SR ++GLE E+G +L  R  R L LT  G    
Sbjct: 7   LSVFTKVVDTGSFSRAASALGLTSAALSRTLAGLEAELGARLLQRTTRRLALTVAGEIYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++     +   + +P GKLR+          +   L  F   YP + +++ 
Sbjct: 67  DRARRILREVDEADAAVAAMAAEPRGKLRLVGPSAFLVYEVARRLPAFTERYPGVSLEVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ--SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                +D+   Y D +I + K        L  R+LV  H+   A+P YL+        +E
Sbjct: 127 PRGYGLDVDSRY-DVSIEIAKEDSRLQDDLAVRQLVQTHLIPCASPSYLRRTGPVAHPRE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L + + +     +P   + + +    +    EPRI+ LQ     S++   + G GIA LP
Sbjct: 186 LLERDCLVAD--VPGVPQVWRFERDNEAIELEPRIA-LQARHGESLLAAALAGMGIASLP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++V+       LVR++ +  T  +T+Y   P+   N G  +AF +F+
Sbjct: 243 TFMVRHALQRGALVRLLPEWRTTPYTLYAAMPDHGPNPGSTQAFVHFL 290


>gi|121596281|ref|YP_988177.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120608361|gb|ABM44101.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 308

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 130/291 (44%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR G  + AAE LHL+QS++S+Q+  LE  VG+ LF R  + L+LT  G +  
Sbjct: 13  LRAFCTVARFGGISRAAEALHLTQSAVSKQVQELERWVGVPLFERSRKRLSLTPAGERYE 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S +  +LE   +EL  S  +  G L ++    L    L   L +    +P I +  +
Sbjct: 73  KAVSALLARLEAATLELITSGDE-GGALHLSVLPTLAAKWLIPRLPQLRAQHPQITLHFV 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186
                 D +    DC+I         +  +   +T +  A   P        PL S Q++
Sbjct: 132 PYVHGYDFADPELDCSILFGDGHWPGA--RAHYLTGNDVALIGPRAGLAGAPPLHSPQDV 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H L+     +P   + +     V+   P+  P     Q + + +I++   +G G+AL+
Sbjct: 190 ARHTLLRHVS-VPGAWQHWAEAHGVNGLDPLAGP-----QFDQFQTIIRAVSVGMGLALV 243

Query: 245 PDYIVKDNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIF 291
           P  +V+D      + E +    +T     + CYPE+      L  FR+++ 
Sbjct: 244 PRCLVQDEIAAGTVTEPLPGGGYTSDLGYWLCYPESRAQLVTLVRFRDWLL 294


>gi|313497082|gb|ADR58448.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 307

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 122/273 (44%), Gaps = 17/273 (6%)

Query: 32  SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91
           S +SR IS LE+ +G++L  R  R L+LT+ G +        + ++ + +  L     + 
Sbjct: 35  SVVSRAISRLESHLGVQLLRRTTRRLSLTDSGLEYVEQARAAFQQIASAEQALSGHG-EV 93

Query: 92  SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151
            G++R++     G + L   L  F L YP +Q++L + N+++D+  +  D AIRL   + 
Sbjct: 94  QGRVRLSAPTTYGHHRLPAMLAAFTLRYPKVQVELNITNRNVDLVAEGYDLAIRL-GDLP 152

Query: 152 SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211
            SSL+ R+L    +   AAP YL     P S+ EL  HN + F  ++P       W    
Sbjct: 153 DSSLVARRLEEARLCLVAAPAYLARAGRPQSLAELAGHNCLPF--IMPSNGRPGVWQFRQ 210

Query: 212 DR------PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDV 262
                   P G P ++    +  L  +     G GI    ++IV +      LVR++ED 
Sbjct: 211 GEEELLFVPQGNPVVA----DDVLGCISLAEQGVGICQTYEFIVAERLQRGRLVRLLEDY 266

Query: 263 ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                     YP   + +G  +A  + +    R
Sbjct: 267 EGARRPFSVIYPPHRQLSGASRALIDSLMTTGR 299


>gi|253686666|ref|YP_003015856.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753244|gb|ACT11320.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 311

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 115/260 (44%), Gaps = 30/260 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S S++S+ ++ LE E+ IKL  R  R + LTE G   +
Sbjct: 7   MSVFARVVEFGSFTAAARQLQMSVSAVSQTVTKLEDELQIKLLNRSTRSIGLTEAGKIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H+      +L   +  P G LRI ++  + QN+L       L  YP + + L+
Sbjct: 67  HGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLSTMTAAMLKEYPGLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  ++L ++ M   AA  YL     P      D
Sbjct: 127 TGIPAPDLIADGLDIVIRV-GALQDSSLFSKRLGSMPMVICAAKSYLAQHGTP------D 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQV--------NSYLSIMQY 234
           K          P  M +F+WL    RP  E     P     +V        N   +++++
Sbjct: 180 K----------PADMVNFSWLEYSVRPDSEFELIAPEGISTRVTPQGRFVTNDPQTLVRW 229

Query: 235 CVLGSGIALLPDYIVKDNPN 254
              G+GIA +P   V D  N
Sbjct: 230 LKAGAGIAYVPLMWVVDEIN 249


>gi|227326618|ref|ZP_03830642.1| putative DNA-binding transcriptional regulator [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 308

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 115/260 (44%), Gaps = 30/260 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S S++S+ ++ LE E+ IKL  R  R + LTE G   +
Sbjct: 1   MSVFARVVEFGSFTAAARQLQMSVSAVSQTVTKLEDELQIKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H+      +L   +  P G LRI ++  + QN+L       L  YP + + L+
Sbjct: 61  HGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLSTMTAAMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  ++L ++ M   AA  YL     P      D
Sbjct: 121 TGIPAPDLIADGLDIVIRV-GALQDSSLFSKRLGSMPMVVCAAKSYLAQHGTP------D 173

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQV--------NSYLSIMQY 234
           K          P  M +F+WL    RP  E     P     +V        N   +++++
Sbjct: 174 K----------PADMVNFSWLEYSVRPDSEFELIAPEGISTRVTPQGRFVTNDPQTLVRW 223

Query: 235 CVLGSGIALLPDYIVKDNPN 254
              G+GIA +P   + D  N
Sbjct: 224 LKAGAGIAYVPLMWIVDEIN 243


>gi|167907710|ref|ZP_02494915.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 315

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 26/291 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L R  +E    +E+T   L  ++        G +RI+ +  +G  +L   +      +P
Sbjct: 67  AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L L N+  D+    AD A+R+ +P Q + LI R +  I +  +A   YL  C  P
Sbjct: 123 ALTIELALTNRVQDLLRREADIAVRMTRPGQ-TQLIARHIGGIELGLHAHRDYLARCGTP 181

Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               EL +H LI       F   I K    F+  A             L+ +S L+ +  
Sbjct: 182 RDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----------ALRTDSDLAQLAL 230

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
              G+GI      + K +P LVR++         ++    E L+ + + +A
Sbjct: 231 IRCGAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 281


>gi|70729803|ref|YP_259542.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344102|gb|AAY91708.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 297

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 120/250 (48%), Gaps = 10/250 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR F  VA + + T A + L +S S++SR+I  LE  +   LF +  +G  LTE 
Sbjct: 1   MNWDDLRFFIAVANASNITDAGQALKVSASTVSRKILVLEQALSSVLFLKTTQGYFLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L  +  E+  +L   + +L     + +G +RI     +G +L+   L +F L +P I
Sbjct: 61  GQALLPMALEIEERLRLMERQLSRPGARMAGVVRIECPELMGSHLIIPALAQFRLQHPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
               +   + + ++  ++D  +RL++P ++ +   R++  +    + +P Y      P  
Sbjct: 121 SFDFVNAARSVKLTQSHSDLLLRLQRP-EAGNFTLRRVGELTQALFCSPGYAAAHGCPEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             EL +H+LI +   +   M    WL  +  D+P+       ++  +  + ++    G G
Sbjct: 180 PSELRQHSLIGWNQTLAH-MPLARWLDQLSGDQPL------WMRTGNLEAQLKAVQAGLG 232

Query: 241 IALLPDYIVK 250
           IA LP YI +
Sbjct: 233 IAALPAYIAE 242


>gi|317053222|ref|YP_004118989.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952961|gb|ADU72433.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 299

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 109/234 (46%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF    + GSF  AAE++ +S   ++R I+ LE ++  +L  R  R  +LT  GS+  
Sbjct: 8   MRVFVAAVQMGSFVAAAEKMGMSPQMVARHIATLEKQLATRLLSRTTRKQSLTSTGSQYF 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   ++  + E   ++  P+G +R+   +  G+  L   L +F+  YP I I+L 
Sbjct: 68  RRCLTILQAIDDAENEASGTAEVPAGTIRVNAPVTFGRYALVNFLTQFIEDYPHINIELT 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  I+ S+   D  IR+    ++  L+ + LV   +   A+P YL    +P    EL 
Sbjct: 128 LADDVINASVAGFDAVIRIGDLDKNLRLVAKPLVAYRLIVCASPEYLIKNGKPQHPTELR 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            H  I F              A+ D        S L VN + ++++  + G+G+
Sbjct: 188 HHQCIGFSPWQEAGSTHLWPFASQDGQSNIEVSSRLTVNDWGAMLEAALKGAGV 241


>gi|241663943|ref|YP_002982303.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240865970|gb|ACS63631.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 302

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 138/309 (44%), Gaps = 37/309 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE 
Sbjct: 1   MEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEAALGVRLMTRTTRQLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   + ++ +L     +   +S   +G LRIA   ++G   L   +   L  YP +
Sbjct: 61  GSHFYDDIAPLFERLREVHADTTAASETVAGTLRIAAPYEVGAQHLTEPVCRTLEKYPHL 120

Query: 123 QIQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+ +  +  D ++  Y    + + + +  SSL+ R++V I    YA+P  L   R PL
Sbjct: 121 QIQVHISWEQPDLLASGYDIVFVMVDQVLPDSSLVARRVVLIPRGLYASPTLLAE-RPPL 179

Query: 182 SIQELDKHNLITFGDLIP-KCM---EDFNWLATVDRPIGEPRISCLQV---------NSY 228
                      T  DL    C+   +D +W     RP+GEP    ++V         N+ 
Sbjct: 180 K----------TPADLAGWPCLSGPDDASW---AFRPVGEPTAEPIEVPIQPRLQTLNAE 226

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +   +  V G G+A +   +         LVR++ D    +  VY     AL    KL  
Sbjct: 227 MR-ARAAVRGLGVARMARSVGDTEVAAGRLVRVLPDFELTALRVY-----ALMPARKLVP 280

Query: 286 FRNFIFLKA 294
            +  +FL A
Sbjct: 281 RKVRVFLDA 289


>gi|126730587|ref|ZP_01746397.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
 gi|126708753|gb|EBA07809.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
          Length = 298

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 129/308 (41%), Gaps = 37/308 (12%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L+ F   A++GSFT AA+QL +S    S+ ++ LE  +G++L  R  R + LT  G  
Sbjct: 5   DQLKTFVATAKTGSFTAAADQLGVSNRLTSKYVAELENRLGVRLLQRTTRKVGLTPAGED 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   L+    E+ ++S   +G +RI+  +  G+  + G L  F    PD+   
Sbjct: 65  LLARAPALLDDLDALLAEVSDTSRGFTGVVRISAPVTFGEVYVAGMLARFAARNPDLTFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D++ D  D A R+ +     SL  RKL  +   A A P YL     P +  +
Sbjct: 125 LRLHDGFVDLASDGIDLAFRVGQS-DMRSLKSRKLGEMRSVAAAGPAYLDGHGAPATPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---------------SCLQVNSYLS 230
           L  H           C+ D N  A        PR                   QVNS  +
Sbjct: 184 LRHH----------ACILDTNRRA--------PRRWVFLKNGTEQAVDVQGRFQVNSARA 225

Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
             +    G GI   P + V D      LV +++D  + +  V   Y E      K++A  
Sbjct: 226 AAELAASGLGICYTPRFAVTDALATGRLVPVLKDYESTTIPVSAVYLEGRSLPRKIRALI 285

Query: 288 NFIFLKAR 295
           +F    +R
Sbjct: 286 DFAVEDSR 293


>gi|309783451|ref|ZP_07678156.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308917782|gb|EFP63474.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 298

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 143/308 (46%), Gaps = 25/308 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +F  +  +G+ ++AA  + +S+++IS +++ LE  VG +L  R  R + LTE 
Sbjct: 1   MDAHSLVLFVDIVEAGNLSNAARNMKMSRANISYRLTQLEKSVGQQLMRRTTRRVELTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++    +  +L   Q  +        G +R++     G  ++ G L EF   YPDI
Sbjct: 61  GQRLYQHGRVIRDELMAAQESVAVFGKTLQGSVRLSVPTGFGHMVMSGWLIEFKRQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQ---SSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            + L+ DN+  D+  D  D A+R + +P Q   ++ L Q + VT    +Y+  H +    
Sbjct: 121 ALDLLFDNRVDDLLRDEVDVAVRVMSEPPQQTVATELAQVRYVTCASTSYSDTHSM---- 176

Query: 179 EPLSIQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            P+++++L +  LIT      DL     +D      +  P        L   ++  + + 
Sbjct: 177 -PVTLEDLGRVPLITSAVAGRDLRVSAYQDEQRHELILHP-------TLASENFQFLREA 228

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR-----NF 289
            + G G+ L+P+Y+V+ +    R+   +     +V+      L+  G+ +        NF
Sbjct: 229 ILAGLGVGLVPNYVVEQDLAEGRVSTTLNDWRLSVFGTRMFLLRMPGRYQTLATRTLINF 288

Query: 290 IFLKARDW 297
           +  KAR W
Sbjct: 289 VVEKARAW 296


>gi|325524915|gb|EGD02852.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 306

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 141/293 (48%), Gaps = 13/293 (4%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D LR  ++  R+   G+F+  A +  L Q +IS+ ++ LE ++G++L  R    L  T++
Sbjct: 2   DSLRSMHLFVRAVELGNFSAVAREEGLGQPTISKIVAALEKDLGVRLLERSTTSLAPTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  +      +++  + +P GKL +   + LG+  L   + EFL +YP+I
Sbjct: 62  GRRFYERCKRLLDEYAGAVADVRGLTQRPVGKLVVNAPMGLGELRLNALMLEFLAVYPEI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L ++ ID+  +  D AIRL   +    ++ R +        AAP YL    +   
Sbjct: 122 EVELHLTDRVIDLIEEGVDVAIRLGH-VLPPDVVARSIAVSPRLLVAAPQYLSRAPKIRK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H+ + +         +  ++   +R +  P  S  +VNS L++ +  + G+ + 
Sbjct: 181 PGDLARHDYVGYARA--GVGAELEFVRGTER-VAVPVRSRYRVNSSLALRECFLAGNAVG 237

Query: 243 LLPDYIVK---DNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P ++V+   D   LVR++   D+  P  T++  Y        + +AF  F+
Sbjct: 238 SGPAWLVQDLIDTGRLVRLLPKWDMALP-HTLHLVYASRRYLPLRTRAFLQFM 289


>gi|325276280|ref|ZP_08142069.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324098584|gb|EGB96641.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 300

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 129/297 (43%), Gaps = 24/297 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A  QL + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  + E     +   S +P G+LR++  + L    L   +  FL  YP +Q
Sbjct: 63  ERYLHHCQAMLLEAEAADETVASMSSEPRGRLRVSCPVALAHAFLPQVISRFLEQYPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++L N+ +D+  +  D A+R+R    +  +L+ R+L    M   AAP +  + R+P  
Sbjct: 123 LDMVLLNRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIRDPAE 182

Query: 183 IQEL------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +  L      +   L+ F  L P   +    L        EPR++   ++ ++       
Sbjct: 183 LATLPVLGAAEADRLVHFRLLGPNGKQQDLAL--------EPRLA---IDDFVVRNAAVR 231

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G   LP    +   +   LVR++ +   P   +   YP      G L A R +I
Sbjct: 232 AGLGFTALPSMFCEAELERGELVRLLPEWSLPGGYLQAVYPH---RRGLLPAVRVWI 285


>gi|262273887|ref|ZP_06051700.1| transcriptional regulator [Grimontia hollisae CIP 101886]
 gi|262222302|gb|EEY73614.1| transcriptional regulator [Grimontia hollisae CIP 101886]
          Length = 292

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 28/301 (9%)

Query: 3   FDWDKLRVFYV-VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW      YV V   GS   AA +L+ S S++S++++ LE ++G++L  R  R LT+T+
Sbjct: 1   MDWITCAKSYVTVVEMGSLAQAATKLNTSSSALSKRLAWLENQLGVQLLKRTTRTLTMTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +         E   +  + SG LR+   +  G  LL  N+ EFL  YP+
Sbjct: 61  AGRLFYQRGKLLLDDWTQLVSETTSTYGEVSGVLRVGAPLATGSRLLVNNIGEFLSTYPN 120

Query: 122 IQI--------QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
           IQ+        QL   N D+ I+ + AD          S+S I  KL       +A+P Y
Sbjct: 121 IQVELHTLAPGQLPDPNLDVVITRELAD--------FNSASFIATKLFEFQPRFFASPAY 172

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN-SYLSIM 232
           L      +  ++L  HN + +G        +F     + R +   R+S   V+ +  +++
Sbjct: 173 LAQHPPIVEPEQLLHHNCLLYGSSSHPQEHEFE----LGRKL---RLSGNFVSPNPEALV 225

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              V G GI L+ D  V+   D   LV ++ D+  P    Y  YP+   N  K + F +F
Sbjct: 226 NAAVAGLGIILVGDVTVRKELDQGLLVPVLPDLRQPKSAAYAYYPKLEYNHTKTRLFIDF 285

Query: 290 I 290
           +
Sbjct: 286 L 286


>gi|186474163|ref|YP_001861505.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196495|gb|ACC74459.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 307

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 12/287 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A +GSF+ AA +L L+ + +S+ ++ LET +G++LF+R  R LT+T  G +L    
Sbjct: 10  FIQTAETGSFSAAARRLGLTPAGVSKNVARLETHLGVRLFHRSTRKLTMTPGGEQLWADA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              +  L+       +   KPSG L++   +  G+  L   L EFL  YPDI      DN
Sbjct: 70  GAPFASLQDAFARAAQHDGKPSGVLKVGMALSFGREYLVPLLGEFLERYPDIVPDWHFDN 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+     D AI     + +  ++ R++        A+P Y+K    P    EL + +
Sbjct: 130 RAVDLIAGGFDAAIGAGIEL-TQGVVAREIARPCTIVAASPAYMKGRPLPAHPSELAELD 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL----SIMQYCVLGSGIALLPD 246
            I         +  +    T+   +GE  ++  +V        +I    + G GIA LP 
Sbjct: 189 GIARRSSSTGRLRAW----TMRNQVGEEALAECRVRMIFDDPEAIAHAAMQGLGIAFLPT 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                  ++  L+R++     P   +   YP       K + F +FI
Sbjct: 245 PHAAPWIESGQLMRLLPGWHAPISPLTLYYPNRKLLPAKTRVFIDFI 291


>gi|171317421|ref|ZP_02906614.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097438|gb|EDT42279.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 310

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 3/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R + LT+ G +  
Sbjct: 13  IELFCLAAELGSFTLAATAATVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDSGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   + E       P+G LRI+     G   +   L  F   YPD+ ++  
Sbjct: 73  EQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAFRERYPDVCVETH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID + +  D AIR R P   SSL+ RKL    +   A P YLK    P ++ +L 
Sbjct: 133 LSNRNIDFAEEGFDLAIRGRAP-ADSSLVARKLEDAELVVVATPGYLKRAGVPRAVDDLH 191

Query: 188 KHNLITFGDLIPKCMEDFNWL 208
            H  I F   +P       WL
Sbjct: 192 AHECIQFE--LPSSGRPIPWL 210


>gi|126726494|ref|ZP_01742335.1| transcriptional regulator [Rhodobacterales bacterium HTCC2150]
 gi|126704357|gb|EBA03449.1| transcriptional regulator [Rhodobacterales bacterium HTCC2150]
          Length = 304

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 16/249 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR GSFT AA++L++ Q SIS  I  LET + ++LFYR  R ++LT  G +L 
Sbjct: 14  LMVFEAAARLGSFTRAAQELNVQQPSISASIKQLETSLDVQLFYRSHRSISLTNAGERLF 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +  +  LE +   +++S       L  ++  +     +   L EF  +YP+I ++L 
Sbjct: 74  ADVTRAFELLEQSSTTIRQSVSNDHVTLSASSAFN--NYWMLPRLSEFQKIYPNIDLRLQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +++ D++++    AIRL     +   S LI  +L+    +  AAP  +    +  +I 
Sbjct: 132 TSDREPDLTVEPISLAIRLGTGNWAGCDSHLIAEELI----YPVAAPRVMAAAIQLRNIT 187

Query: 185 ELDKHNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            L    LI   + I   P   + F      ++P   PR   L++N Y  ++Q  + G G 
Sbjct: 188 GLLHQRLIHLEEPIRERPSWAQWFGAFGITEQP---PR-GGLRLNDYALVLQAAMAGEGF 243

Query: 242 ALLPDYIVK 250
           A   D++V+
Sbjct: 244 AFGWDHVVQ 252


>gi|71736168|ref|YP_274750.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556721|gb|AAZ35932.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320324536|gb|EFW80613.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328909|gb|EFW84908.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 303

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 139/292 (47%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR  SF  AA +L +S + +S+++  LE  + + L +R  R +++TE G +
Sbjct: 7   DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMSVVLLHRSTRQVSITEDGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++   G+  +   L E   LYP + I+
Sbjct: 67  VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALYPKLDIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YLK+   PLSI E
Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGVPLSIGE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H+ +    +I +    F  +  ++ P G   +     L  N      Q+C+ G G+ 
Sbjct: 186 LANHDCL----VIKERDRPFG-IWHLNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVL 240

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
           L   + V+ +    R+++  + P +     ++  +   L ++ K++    F+
Sbjct: 241 LRSLWDVRTDLAEGRLVQ--MLPEYRQDADIWAVHTSPLMSSAKVRVTVEFL 290


>gi|270263853|ref|ZP_06192121.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042046|gb|EFA15142.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 308

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 97/187 (51%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T +G+  +
Sbjct: 1   MRIFTRIVELGSFSRAAERLQLPRATVSNVLKRLEQRLGVRLLIRTTRQVQVTSEGTLYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   LE          ++PSGK+RI     L + ++   L +F   YPDI + L 
Sbjct: 61  QRCVQLLGALEEADTLFSRHKLQPSGKVRIDMPHSLAREIVIPALDDFYRRYPDITLALG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  +D+  +  DC +R  +  +  SL+ R++  +     A+P YL     P SI +L 
Sbjct: 121 ANDTHVDLLREGVDCVLRAWE-TEDDSLVARRIAMLPQLTCASPGYLAAFGVPQSIDDLR 179

Query: 188 KHNLITF 194
           +H  + +
Sbjct: 180 QHRAVGY 186


>gi|170726798|ref|YP_001760824.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812145|gb|ACA86729.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 300

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 136/278 (48%), Gaps = 17/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +++F  V  +G  T AAEQL+L++S++S+++S +E ++ +KL  R  R  +LTE G+ 
Sbjct: 5   ENMQIFIKVVETGGITKAAEQLNLAKSAVSKRLSEIEKQLSVKLINRTTRKSSLTEAGNA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPS--GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++    +    E   +  Q SSV+ S  G L++A  +  G   L   L+ F   +P +Q
Sbjct: 65  YYQKCKLILE--EVDDLNCQISSVQQSLNGALKLAVPLSFGVVHLVKALELFAKQHPSLQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ ID+  +  D AIR+   +  SS+  R +  I     A+P YL     P + 
Sbjct: 123 MDLDFSDRYIDLVEEGFDLAIRI-GTLADSSMHARAIAPISHILCASPEYLALNGSPSTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRIS-CLQVNS-YLSIMQYCVLGSG 240
           ++L  H+L+ +  +    +E    L   D +    P  S C+  N  +L  M   V G G
Sbjct: 182 EQLKSHSLLRYSRMPLAGIE----LTDKDNKKFTVPMESHCIANNGDFLKAM--AVSGHG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           IA LP +IV     N  L  +M++        Y  YP+
Sbjct: 236 IAFLPRFIVWQELANGTLESVMQNYQLAQMKAYAVYPQ 273


>gi|184157737|ref|YP_001846076.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332876420|ref|ZP_08444189.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209331|gb|ACC56729.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322508044|gb|ADX03498.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323517630|gb|ADX92011.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735430|gb|EGJ66488.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 301

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 135/261 (51%), Gaps = 14/261 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+  A   +++ S++S+ IS LE  +G++L  R  R   LT +G + 
Sbjct: 11  ELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++ + L+  +  +  + + P G++RI T+     + L   +  F   YP+I+++ 
Sbjct: 71  YEQGIQILNDLDELEQSVTANHI-PKGRIRIHTSFSYWIHFLLPCISLFNQRYPEIELEA 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ I++     D AIR   P++SS+L+ R L + +     +P Y++    P    EL
Sbjct: 130 HLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTYKQYVCSPLYIEKYGCPEHPDEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +H L+     +    ++  WL   AT +  +   ++  L+VN   +I+Q  + G+GIA 
Sbjct: 189 HEHQLLD----VSYQRQNKTWLFKKATQEISLTPSKV--LKVNHGEAILQLALAGAGIAQ 242

Query: 244 LPDYIVKD---NPNLVRIMED 261
           L ++ +++      LV+I+ED
Sbjct: 243 LNEFQIRNALQQKQLVKILED 263


>gi|170693395|ref|ZP_02884554.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141550|gb|EDT09719.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 330

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A+ GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYP++   L 
Sbjct: 67  NCCRQALQSLDDAKAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVTFALT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   ++  +  D AIR   P Q SSL+ RKL        A+P Y+    EP      D
Sbjct: 127 LSDSLSNLVQEDIDLAIRFGVP-QDSSLVARKLAPNRRVLCASPEYISRKGEP-----ED 180

Query: 188 KHNLITF 194
            H+L  F
Sbjct: 181 PHDLANF 187


>gi|190895100|ref|YP_001985393.1| putative LysR family transcriptional regulator [Rhizobium etli CIAT
           652]
 gi|190700761|gb|ACE94843.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 324

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 133/297 (44%), Gaps = 18/297 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA    L +S +SR+++GLE  +G++L  R  R L +TE G
Sbjct: 6   DLNDLMLFAAVVHHGSFSAAALAHGLPKSKVSRRVAGLERRLGVRLLQRSTRALHVTEVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQ---ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             L           E+ Q  L+    +   PSG+L+++  I +    L   L +FL  +P
Sbjct: 66  QAL---LPHCESMAESAQAALEVAASAGEHPSGRLKVSCPIGVAHIYLAPVLGKFLKAHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++ +L L N+ +D+  +  D A+R+R  +  S+L+ R L T      A+P ++      
Sbjct: 123 AVRFELDLTNRRVDVIAEGYDVALRIRSSLDDSNLVVRSLGTSEQMLVASPEFIATHGPF 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCV 236
            S   L +   +      P  +       ++ +P G       +  L  +    + Q  +
Sbjct: 183 GSADSLQRKPGVG-----PAGVRGERNFWSLLKPDGVSIDIEYLPTLMTDDVYVLCQAAL 237

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+A LP  I  D   +  LV+++      +  V+  +P        ++AF +F+
Sbjct: 238 AGIGVARLPVNICGDAIRDGRLVKVLPHYRLHAHGVHAVFPSRRGLVPAVRAFLDFL 294


>gi|163744756|ref|ZP_02152116.1| transcriptional regulator, LysR family protein [Oceanibulbus
           indolifex HEL-45]
 gi|161381574|gb|EDQ05983.1| transcriptional regulator, LysR family protein [Oceanibulbus
           indolifex HEL-45]
          Length = 295

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 131/290 (45%), Gaps = 12/290 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VA+ G+ + AAE L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAYQVAQMGTVSGAAEVLGVHHATVIRHIDALEGRLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       ++      SG+L I T++D     L   L EF    P++ 
Sbjct: 63  EDLLRVARATDDQFSQLAGRIKGRGSDVSGELVI-TSLDFLAPRLAPLLTEFQRQNPELV 121

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ ++ ++   +    A  A+R    P Q  +++Q     + + AYA+ +Y+     P  
Sbjct: 122 VRYLIGDRLFRLEYGEAHVAVRAGAAPDQPDNVVQ-PYSQLSVGAYASRNYVAQYGIPQG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCV-LGSG 240
            ++  KH  I   +   +      WL A V      P  S    +S  + M+  +  G+G
Sbjct: 181 PEDYPKHRFIAADNRDSRAPY-HQWLWANV------PEESITWRSSSGAAMEAALRAGAG 233

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP  + + +P LV I          ++      L  T K++A   F+
Sbjct: 234 IGGLPAAMGRADPELVEIHAPRADWGSALWLVTHVDLHRTSKVQAVLRFL 283


>gi|327188505|gb|EGE55718.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 304

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 131/293 (44%), Gaps = 20/293 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VAR  +F+ AAE+L L+Q +ISRQI+ LE ++G+ LF R +RG+ LTE G+ 
Sbjct: 13  SALAAFDSVARLSTFSAAAEELSLTQGAISRQIAALEEQLGVLLFERTSRGVILTEAGTD 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R  +    ++ +    L   + + + +L +A     G   L   + EF+  +P+I + 
Sbjct: 73  YARAIAGALAEIRSA--SLHAMTKQHNDQLNLAILPTFGTRWLMPRIPEFVARHPEITLN 130

Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
                   D   D  D AI + +P     +S+ L++  +  +     A+P +L N    L
Sbjct: 131 FATRIGLFDFDRDDIDMAIHIGQPDWPGAESTFLMEEMVAPV-----ASPSFL-NSHPVL 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +  L+            F  L     P        ++   + S+ Q C+ G G+
Sbjct: 185 KAEDLLRLPLLQMASRPGAWSHFFESLQVSGAP-----SQAMRFEQFSSVAQACIAGLGL 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           AL+P +++     N  LV+     +      Y   P + K+   + AFR ++ 
Sbjct: 240 ALMPLFLIDSELANGQLVQAFPHQVKSPSAYYAVAPLSRKDFRPVVAFRAWLL 292


>gi|242241334|ref|YP_002989515.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242133391|gb|ACS87693.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 295

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 138/289 (47%), Gaps = 14/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V   GSF+ AA ++ + Q ++S+ +  LE ++   L  R  RGLT TE G +L+
Sbjct: 7   LETFVCVYECGSFSAAARRMGIGQPAVSKAVMQLEQQLATSLLLRSTRGLTPTEAGQQLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +    ++   Q  +   + + SG+LR++  +   +  +   L +F+ L+P++++ ++
Sbjct: 67  DRIAPALTEIRDAQDSIVGGN-QLSGRLRVSAPVTFARLHIFPRLHQFMALHPELKVDML 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  +  D A+RL   +  S L  R++    M   A P +      P +  E++
Sbjct: 126 LDDRPVDLIAEGIDVALRLGD-LHDSGLTARRIAESPMKLLATPGWFAAHGVPTAPPEIE 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
           + + I +  L     E  NWL    R   + R++    ++ ++   + +  + G+G+A+ 
Sbjct: 185 QQDAIVY--LQSSTPE--NWL--FSRGAQQCRVTLSGRIRTSAAEGMREAVLAGNGLAIA 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++      +  +V  ++D    +  ++  YP     + +  AF  F+
Sbjct: 239 SAWMFAPELADGRVVTALDDWQIGTMALWAVYPGGRLTSARAWAFTEFV 287


>gi|92118745|ref|YP_578474.1| LysR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801639|gb|ABE64014.1| transcriptional regulator, LysR family [Nitrobacter hamburgensis
           X14]
          Length = 303

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 127/292 (43%), Gaps = 7/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  +G F+ A  +L++S + +S  I  LE  +G++LF R  R ++LTE G   +
Sbjct: 7   LTAFVRVVETGGFSAAGRRLNMSTTMVSNHIQALEDRLGVRLFNRTTRKVSLTEVGKTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E           KP G LRI     + Q  +   L ++L  YPD+   L 
Sbjct: 67  ERCVQILADIEQADDIAGALQTKPRGTLRIHCATHIVQ-FVAPILADYLKSYPDVTANLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +    +D+  +  D ++RL  P   SSLI R L T       +P YL      L + +L 
Sbjct: 126 IAEHAVDVIAEGFDLSVRLTPP-PDSSLIVRSLATWRHVLCCSPEYLTEHGPLLQLADLA 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN +    L P    D+++  T  + +       L  NS  ++    + G G+ L   +
Sbjct: 185 GHNCLRHA-LYPY-ENDWHFTDTTGKTVSVRVSGNLITNSGETLRAAALRGVGVFLAAGF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +V D+     LV ++ D     F +   YP     + K++ F + +   + D
Sbjct: 243 LVTDDLPSGRLVPLLPDYTPVEFAMNVVYPHRHHLSAKVRMFIDLLAQHSAD 294


>gi|319796581|ref|YP_004158221.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315599044|gb|ADU40110.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 309

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 115/249 (46%), Gaps = 14/249 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V R GSF  A  +L L  +++SR+I  LE ++G +L  R  R LTLT  
Sbjct: 2   LDLNHIAMFVQVVRHGSFAEAGRRLGLPPNTVSRRIQELEAQLGTRLMQRSTRKLTLTSA 61

Query: 63  GSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G   H R    V   +E  Q  L   S +PSG +R+A T D         + EFL   P 
Sbjct: 62  GQAFHERCAGSVDGLVEAGQ-ALITGSQEPSGLVRVAATADFFDFFPMEWVAEFLAANPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREP 180
           +++  +L +   D+  D  D A R  + +  +  + RKL+        A+P Y+     P
Sbjct: 121 VRVDFVLSDAKADLIADQIDVAFRGGE-LPDTGYVGRKLLGPRTDGLVASPAYIAARGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISC-LQVNSYLSIMQYCV 236
            ++++L  H+ +T      +      W  T   P G   E ++S     N+  ++ +  V
Sbjct: 180 ATLRDLTDHDCVTAAHPSGRA----TWRMT--GPDGVEEEVQVSGRFSGNTAQALRRAAV 233

Query: 237 LGSGIALLP 245
            G GIALLP
Sbjct: 234 AGLGIALLP 242


>gi|254474297|ref|ZP_05087687.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211956671|gb|EEA91881.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 308

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 126/289 (43%), Gaps = 10/289 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +WD L+ F  VARSG+    A  + ++ ++++R++  LE  VG +LF R   GL LTE
Sbjct: 10  SLNWDDLKYFLAVARSGTIRGGATLIRVNHTTLARRLEVLEERVGSRLFDRSKAGLVLTE 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      V  ++ T    +     KP G + +     L    +  +L  F   YPD
Sbjct: 70  LGEALLPYAERVEDEMATASRIIVGRDAKPQGTIHVTMPHGLAMTSIMDDLVLFAEKYPD 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L   N   D++   AD   R+   + +  ++ RKLV +   AY    Y +  ++  
Sbjct: 130 IDLNLNFTNNVADLTRREADVGFRIADEV-TQDVVGRKLVQMSQAAYCTREYAERIKD-- 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                +  N I + +   +      W+     P  + +    +V+  + ++     G G+
Sbjct: 187 --NSGEGLNFIGWHEAEGETTAP--WILNGCYPKAKLK---HRVSELVPLISLAAAGLGM 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L   +   +P L+R       P  +++      L+NT +++ F +F+
Sbjct: 240 AYLACNLGDRHPTLIRAPFQKPMPYRSIWLLLHRDLRNTARVRLFVDFV 288


>gi|162452439|ref|YP_001614806.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161163021|emb|CAN94326.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
          Length = 317

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 126/283 (44%), Gaps = 19/283 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L +F  +   GS + A   L L ++++SR ++ LE  +G  L  R  R L+LT+ G
Sbjct: 25  DLSGLSMFVRIVEEGSLSAAGRALGLPKATLSRNLALLEKRLGAPLLIRSTRALSLTDTG 84

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  + +    +++     PSG LRI   +  GQ  +   L  F+  YP ++
Sbjct: 85  RRFFDKVQPIVREAQQATADVKILHAAPSGLLRITAPVAYGQAAIAPRLLSFMGRYPAVR 144

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +++     D AIR+   I+ S LI  KL  + M   A+P +L+    P   
Sbjct: 145 IDLHLHDGRVNLVNGGYDLAIRM-GAIEDSELISHKLADVTMVIVASPTWLEQHGMPQRP 203

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEP-RISC-LQVNSYLSIMQYCVLGSG 240
            EL +H+ ++T  D++        W     R  GE  R+   +   + +        G G
Sbjct: 204 AELAQHDAVVTRPDIV-------QW-----RVGGETVRVPWRMSTGNMIVTRDAARAGLG 251

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
           IA +P+++V    +   LVR++ DV  P       Y  A   +
Sbjct: 252 IAFVPEFLVLRDLERGTLVRLLPDVELPVIQATALYTRAASQS 294


>gi|71733708|ref|YP_273827.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554261|gb|AAZ33472.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 306

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 131/287 (45%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F+++A+ GS    A +L ++  +IS+++S LE  +G +L  R  R ++LT +G    
Sbjct: 7   LSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEARLGTRLVNRTTRSMSLTAEGELYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +++  +  +  SS  P G +R+  ++  G+  +   L  F   YP++QIQL 
Sbjct: 67  SHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQLE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+++   D  IR    +  ++   RK+ +      A+P YL+    P  + EL 
Sbjct: 127 ISDHPLDLAIHGFDLGIRF-GSLPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAELQ 185

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN I    +  P  +  F+             + C   N     + + + G GI L  +
Sbjct: 186 HHNCIFLRQNETPYGVWSFSNGGRTQNVKVHGALGC---NDGEVALNWALEGFGILLRAE 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +     +  L  ++ED       VY  YP+ L  + +++   NF+
Sbjct: 243 WDIARYVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRYLINFL 289


>gi|15833197|ref|NP_311970.1| transcriptional activator TtdR [Escherichia coli O157:H7 str.
           Sakai]
 gi|168754028|ref|ZP_02779035.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4401]
 gi|168760219|ref|ZP_02785226.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4501]
 gi|168767081|ref|ZP_02792088.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4486]
 gi|168773285|ref|ZP_02798292.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4196]
 gi|168781934|ref|ZP_02806941.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4076]
 gi|168785932|ref|ZP_02810939.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC869]
 gi|168797649|ref|ZP_02822656.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC508]
 gi|195937204|ref|ZP_03082586.1| transcriptional activator TtdR [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808706|ref|ZP_03251043.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4206]
 gi|208814410|ref|ZP_03255739.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4045]
 gi|208821755|ref|ZP_03262075.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4042]
 gi|209395880|ref|YP_002272533.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4115]
 gi|217326801|ref|ZP_03442884.1| lysR substrate binding domain protein [Escherichia coli O157:H7
           str. TW14588]
 gi|254795011|ref|YP_003079848.1| transcriptional activator TtdR [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228072|ref|ZP_05942353.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261254928|ref|ZP_05947461.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284439|ref|YP_003501257.1| transcriptional activator TtdR [Escherichia coli O55:H7 str.
           CB9615]
 gi|118574169|sp|Q8XBK9|TTDR_ECO57 RecName: Full=HTH-type transcriptional activator ttdR
 gi|13363416|dbj|BAB37366.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. Sakai]
 gi|187770892|gb|EDU34736.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4196]
 gi|189000617|gb|EDU69603.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4076]
 gi|189358470|gb|EDU76889.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4401]
 gi|189363827|gb|EDU82246.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4486]
 gi|189369350|gb|EDU87766.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4501]
 gi|189373830|gb|EDU92246.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC869]
 gi|189379803|gb|EDU98219.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC508]
 gi|208728507|gb|EDZ78108.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4206]
 gi|208735687|gb|EDZ84374.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4045]
 gi|208741878|gb|EDZ89560.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4042]
 gi|209157280|gb|ACI34713.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4115]
 gi|209759298|gb|ACI77961.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209759300|gb|ACI77962.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209759302|gb|ACI77963.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209759304|gb|ACI77964.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209759306|gb|ACI77965.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|217319168|gb|EEC27593.1| lysR substrate binding domain protein [Escherichia coli O157:H7
           str. TW14588]
 gi|254594411|gb|ACT73772.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|290764312|gb|ADD58273.1| transcriptional activator TtdR [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189411|gb|EFW64070.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640133|gb|EFX09705.1| transcriptional activator TtdR [Escherichia coli O157:H7 str.
           G5101]
 gi|320645431|gb|EFX14440.1| transcriptional activator TtdR [Escherichia coli O157:H- str.
           493-89]
 gi|320650742|gb|EFX19199.1| transcriptional activator TtdR [Escherichia coli O157:H- str. H
           2687]
 gi|320661810|gb|EFX29218.1| transcriptional activator TtdR [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666961|gb|EFX33937.1| transcriptional activator TtdR [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337763|gb|EGD61597.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. 1125]
 gi|326347328|gb|EGD71053.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. 1044]
          Length = 310

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|307256719|ref|ZP_07538498.1| hypothetical protein appser10_7220 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864767|gb|EFM96671.1| hypothetical protein appser10_7220 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 298

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 139/288 (48%), Gaps = 10/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE G  
Sbjct: 5   NAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTEAGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+IQ+ 
Sbjct: 65  YYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPNIQLN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P ++++
Sbjct: 125 IEFSDRRVDVVAEGYDLVLRI-GTLEDSSIVAKRIARSELVLIASPDYLAKQGTPENLEQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + + +      + + ++    +   +P    +  N Y +++Q    G GI  LP
Sbjct: 184 LTEHTCLIYEN-----HQQWQFMNGEQKVKIKPNAHVISNNGY-ALLQMTKAGQGIVNLP 237

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++VK+     NLV I+      S  +   YP     + K+K F  F+
Sbjct: 238 LFLVKEEISAGNLVEILPQYKQHSIDISVLYPHRRYLSPKVKVFIEFL 285


>gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074243|gb|ADJ63642.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 303

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 127/290 (43%), Gaps = 12/290 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V   GSF  AAE L +S +  +R I+ LE  +G +L  R  R L+LTE G   
Sbjct: 6   SMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTEAGQAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++  +  +   + +P+G L I      GQ+ L   L  +   YP++ + +
Sbjct: 66  LERVRMILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPEVALDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  + ID+  +  D           +S+I R+L    +    +P Y+     P   ++L
Sbjct: 126 SLSERSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCTSPAYIARQGAPEQPEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +HN + F     +     N    V D PI    +S +  NS + +    + G GI L P
Sbjct: 186 SRHNCLNFSHEYLRHHWHVNTNGGVLDVPI----VSKVVSNSGVLLRDLALAGMGIVLRP 241

Query: 246 DYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
            Y + D+    R+++  + P F      +   YP     + K+++F  FI
Sbjct: 242 SYSLGDDLRSGRLVQ--VLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFI 289


>gi|227114039|ref|ZP_03827695.1| putative DNA-binding transcriptional regulator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 305

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 115/260 (44%), Gaps = 30/260 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S S++S+ ++ LE E+ IKL  R  R + LTE G   +
Sbjct: 1   MSVFARVVEFGSFTAAARQLQMSVSAVSQTVTKLEDELQIKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H+      +L   +  P G LRI ++  + QN+L       L  YP + + L+
Sbjct: 61  HGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLSTMTAAMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  ++L ++ M   AA  YL     P      D
Sbjct: 121 TGIPAPDLIADGLDIVIRV-GALQDSSLFSKRLGSMPMVVCAAKSYLVQHGTP------D 173

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQV--------NSYLSIMQY 234
           K          P  M +F+WL    RP  E     P     +V        N   +++++
Sbjct: 174 K----------PADMVNFSWLEYSVRPDSEFELIAPEGISTRVTPQGRFVTNDPQTLVRW 223

Query: 235 CVLGSGIALLPDYIVKDNPN 254
              G+GIA +P   V D  N
Sbjct: 224 LKTGAGIAYVPLMWVVDEIN 243


>gi|145298250|ref|YP_001141091.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851022|gb|ABO89343.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 302

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 124/252 (49%), Gaps = 15/252 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  RVF  +ARSG+ + AA  L +  +++SR++  LE+ +G+ LF RH  G  LT+ G 
Sbjct: 7   WDDARVFLAIARSGTLSGAALALDMGIATVSRRLDRLESALGLPLFSRHQHGYRLTDDGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      + H       E  +   + +G +R+AT  +L   L+  +L     ++PD+++
Sbjct: 67  ALLARAEALEHAGHAFG-EAGQQQGQVAGCVRLATADNLANPLIIPSLARLFAIHPDLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+   + +++    AD A+R+ KP   +  I+R L T+    Y A  Y+ +        
Sbjct: 126 ELVTGVQTVNLHRRDADLAVRMAKPDTGNVTIKR-LGTLGFGLYGASSYVDSRHPGTDAA 184

Query: 185 ELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             D+   I +G+    +P       W+A + R  G P   C ++ N+  + +     G G
Sbjct: 185 SFDEDAFIGWGESHGHLPAA----KWIARMLR--GRP---CRVETNTLSAQLAAATAGLG 235

Query: 241 IALLPDYIVKDN 252
           +A+LP Y+ K+ 
Sbjct: 236 LAVLPHYLAKET 247


>gi|172065646|ref|YP_001816358.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997888|gb|ACB68805.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 297

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 130/271 (47%), Gaps = 5/271 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR  SFT AA +L +SQS++S+ +  LET +G++L  R  R ++ TE G +
Sbjct: 7   NDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLETRLGVRLLTRTTRSVSTTEAGEE 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +  +    ++E     + +   KP+G +RI  T      ++   L+  L  YPDI+++
Sbjct: 67  LFQAVAPRIDEIEMKLAAVADFRDKPAGVVRITATEHPIDTIIWPKLRRVLPDYPDIRVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D    +I  +  D  +R    +    +  R    I M   A+P YL   + P + Q+
Sbjct: 127 LSVDYGLSNIVEERYDIGVRYGDQVAKDMIAVRISPDIRMTMVASPAYLDGRKPPKTPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  H+ +T      K +  + W     R   + R++  +  N+   ++Q  + G GIA +
Sbjct: 187 LLDHDCVTLRLATAKGI--YAWELKKGRNEIQARVNGRITCNTQPHMVQAALDGFGIAFV 244

Query: 245 PDYIVKDN--PNLVRIMEDVITPSFTVYFCY 273
            + IV D+     +RI+     P F  Y  Y
Sbjct: 245 TEDIVLDHVRSGQLRIVMPDWCPVFPGYHAY 275


>gi|157372074|ref|YP_001480063.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323838|gb|ABV42935.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 302

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 134/296 (45%), Gaps = 13/296 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LHR 68
           VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT+ G + L R
Sbjct: 9   VFITIVDRGSMIAAAETLEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTDAGERTLER 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    E   +E  E S +  G LRI  +  LGQ  L G + ++L  +P + + L +
Sbjct: 69  CRQMLALAGEIDLVE-GEQSDELRGLLRITCSQSLGQTALVGAVAQYLKRHPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L +      AAP YL     P   Q+L  
Sbjct: 128 NNRAVNLVEERIDLALRITNEL-DPNLIARPLSSCASVVCAAPAYLAAHGTPRHPQDLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K +  F+    V   +       L  N  + +M   V G+G+++ P Y 
Sbjct: 187 HNCLTY-SYFGKSLWHFDHQG-VKSAVAVS--GNLSANESVVLMAGTVQGAGVSMQPYYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298
                 +  L+ +M D    S  +Y  Y    +    L+   +F+   F     W+
Sbjct: 243 AAPLLASGELIELMPDYRPQSMGIYGIYTSRRQMPATLRTMLDFLVEWFATDAGWR 298


>gi|56708693|ref|YP_170589.1| transcription regulator [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110671165|ref|YP_667722.1| transcription regulator [Francisella tularensis subsp. tularensis
           FSC198]
 gi|56605185|emb|CAG46317.1| transcription regulator [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321498|emb|CAL09700.1| transcription regulator [Francisella tularensis subsp. tularensis
           FSC198]
          Length = 300

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 142/291 (48%), Gaps = 19/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
              FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT +G  L 
Sbjct: 14  FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTHEGMLLF 73

Query: 68  RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                + ++++  + +L ES  K PSG L+I+T+    QN+L   +KE+   +  ++I++
Sbjct: 74  NYCKTLQNEIDNIR-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 132

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++ K  +   + AD  + +   P +  +++ RK+ +      A+P Y+     P +I +
Sbjct: 133 SIEEKMPNFKSNEADIILGVNWTPPE--NIVARKIASTRYVLCASPAYINKNGSPSNISD 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242
           L  HN I     +         L  + +    P+   S +  N+ +  ++ CVL   GIA
Sbjct: 191 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +YIVK+   N  L+ +++D       +Y  YP+      K+K F N +
Sbjct: 243 QFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLV 293


>gi|293449398|ref|ZP_06663819.1| HTH-type transcriptional activator ttdR [Escherichia coli B088]
 gi|291322488|gb|EFE61917.1| HTH-type transcriptional activator ttdR [Escherichia coli B088]
          Length = 300

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 1   MQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 61  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 121 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 180 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 236

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 237 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 282


>gi|260574837|ref|ZP_05842839.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
 gi|259022842|gb|EEW26136.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
          Length = 295

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 135/301 (44%), Gaps = 13/301 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS + WD++R  + VAR G+ + AAE L +  +++ R I  LE  +G +LF RHARG T 
Sbjct: 1   MSIETWDEIRTAFQVARMGTVSGAAEVLGVHHATVIRHIDALEKRLGARLFQRHARGYTP 60

Query: 60  TEQGSKL---HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           TE G  L    + T E +++L  ++I+ Q  +V  SG+L + T+I     LL   L  F 
Sbjct: 61  TEAGRDLLGVAQATEEQFNQL-ASRIKGQGETV--SGEL-VVTSISGIAGLLTPVLAGFQ 116

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            L+P + ++ + D +   +    A  AIR     +    + + LV I    YAA  Y+  
Sbjct: 117 ALHPGLTVRFLTDMRLFRLDYGEAHVAIRAGASPEEPDNVVQPLVRIRTGLYAARSYIAA 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P    +L  H+ I   + + +      WL         P     + +    +     
Sbjct: 177 HGLPAGEADLAGHHFIAADNALSRAPFQ-RWLQDSV----PPEAITYRASEPAGLEAAVR 231

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            G+G+  +  Y+   +P+LV ++      +  ++      L  T K+++F   +   A  
Sbjct: 232 AGAGLGFMSVYLAAGDPDLVEVLPPRPDWAGHLWIVTHVDLHRTLKVQSFLAHLKQAAAG 291

Query: 297 W 297
           W
Sbjct: 292 W 292


>gi|187923402|ref|YP_001895044.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714596|gb|ACD15820.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 329

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 134/313 (42%), Gaps = 49/313 (15%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   SHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+  YP+
Sbjct: 65  AGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTVSQTILSQILPEFMHRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ +D+  D  D A+R+R  P ++++++ R L         AP  L+    P
Sbjct: 125 VRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--------------------EPRI 220
                           L+P    D N   T+D P G                    EPR 
Sbjct: 185 ----------------LLPA---DLNGFETLDVPTGDGRHVYNLIAPDGTRHAHEHEPR- 224

Query: 221 SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEAL 277
             L     ++I +  + G GIA LP+ +         L  +M     P+  +Y  +   +
Sbjct: 225 --LVTADLMTIREAVLAGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVF---V 279

Query: 278 KNTGKLKAFRNFI 290
              G + A R F+
Sbjct: 280 SRQGMVPAVRAFV 292


>gi|170765782|ref|ZP_02900593.1| transcriptional regulator, trunscation [Escherichia albertii
           TW07627]
 gi|170124928|gb|EDS93859.1| transcriptional regulator, trunscation [Escherichia albertii
           TW07627]
          Length = 310

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +   GSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHCGSFSAAAAALGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSYIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+    P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPLPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+    +  LVR++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVQPFLASGKLVRVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|170735859|ref|YP_001777119.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818047|gb|ACA92629.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 319

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 135/290 (46%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  + G TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVANTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +   ++  KL    +  YA   YL N    
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATRDYLANHAPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +       N L  +DR +     + L+  S ++ +   + G G
Sbjct: 190 TCTDDLARHAFISYVDDLAFS----NELLYLDRAV-PGATAGLRTTSVIAQVFAALQGGG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++    P L  ++ + +  +   +    E L+   ++ A  +++
Sbjct: 245 LAILPCFMAATQPALAPVLPNDVVVTRCFWLTCREDLRKLRRVTALWDYL 294


>gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151280909|gb|ABR89319.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 304

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 131/291 (45%), Gaps = 8/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F V+ + GS    A +L ++  +++++++ LE  +G++L  R  R +++T +G
Sbjct: 3   DLSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTHEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  ++E  +  +  S   P G LRI  T   G+  +   + +F+  YP+I+
Sbjct: 63  EIYLAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPEIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL L ++  ++     D  IR+ + +  + +I RK+        AAP Y+K    P   
Sbjct: 123 VQLQLSDRPANLIDQAFDIGIRIGE-MPDARIIARKIAANRRLLCAAPAYIKRHGTPSVP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L K   I   +         +W L    R         L  N   + + + + G GI 
Sbjct: 182 RDLQKLQCIVLRE---NDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGIL 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   + V     +  LV ++ D   P   +Y  YPE L  + K+ AF +F+
Sbjct: 239 MRSQWDVAAYLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDFV 289


>gi|78062005|ref|YP_371913.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969890|gb|ABB11269.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 304

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 21/254 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +   WD +R F  V RSGS + AA  L +  S+++R+I  LE+ +GI+LF R  RG   T
Sbjct: 13  LPMSWDDIRYFLAVMRSGSLSAAARALQVQHSTVARRIDALESALGIRLFDRLPRGWPPT 72

Query: 61  EQGSKLHRVTSEVYHKLET---TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           ++G  L    +E   +LET         + +    G +R++ +     + L   L     
Sbjct: 73  DEGLHL----AEHATRLETDAHAFARAAQGAAALDGVVRVSASPVFASHFLAPRLARAQR 128

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P ++I L+ +    ++    AD A+RL +P +   L  R+L T+     AAP +    
Sbjct: 129 AWPALRIDLLGEMHAANLYAREADLAVRLSRPTE-PGLAARRLGTMRFALCAAPEW---- 183

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               +    D    + + D + +  +   WLA         R      N   +  + C  
Sbjct: 184 ----ADAPPDTWPFVGYDDALAQTPQ-HQWLAR----FAAGRRFAFVTNDLAAQHRACAA 234

Query: 238 GSGIALLPDYIVKD 251
           G+G+ALLP ++V D
Sbjct: 235 GAGVALLPRFLVDD 248


>gi|330807378|ref|YP_004351840.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375486|gb|AEA66836.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 315

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           S +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 10  SLNWDDLKFFLEVARTRKASTAAKRLAVDYTTVSRRISSLEASLGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N    
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLQLYATQQYLDNHPPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L KH+ I++ D +    E   +LA V         S   +  +++  Q    G  
Sbjct: 189 RRPADLSKHSFISYVDDLAFSSE-LLYLANVLPGANAHLRSTSVIAQFVAAQQ----GRS 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +P L+ ++ + IT +   +    E L+   ++    ++I
Sbjct: 244 LAILPCFLAAQDPRLLPVLPEDITVTRQFWMYCREDLRKLKRITLLWDYI 293


>gi|222872882|gb|EEF10013.1| predicted protein [Populus trichocarpa]
          Length = 246

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 102/190 (53%), Gaps = 2/190 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +++F  VA   SFT AA+ + + ++S+S+ +  LE  +G +L +R  R + LT+ G  
Sbjct: 8   EHMQIFSRVAEMASFTRAADSMGMPKASVSQAVQQLEARLGTRLLHRTTRRVQLTQDGQA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +    ++   ++  Q + Q++   P  GK+R+  T  L ++++   L + L  +P +++
Sbjct: 68  CYERCQDLLADVDEFQGQFQQAGDAPLQGKVRLDMTTGLARHVVMPLLPQLLQSHPALEL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L    + +D+  +  DC +RL  P+    L+ R L  + +   A+P Y++    P ++Q
Sbjct: 128 ELSCTERRVDLVREGFDCVLRL-GPVDEPGLVARPLGLVALATCASPGYVQAHGLPATLQ 186

Query: 185 ELDKHNLITF 194
           +L  H L+ +
Sbjct: 187 DLGGHRLVHY 196


>gi|116694467|ref|YP_728678.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528966|emb|CAJ95313.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 306

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 11/216 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A +GSF  AA +L L++S+I + I+ LE  VG +LF R  R L LT+ G   +  
Sbjct: 14  AFVAAAEAGSFAQAAARLGLTRSAIGKAIARLEARVGTRLFVRTTRSLALTDDGQAFYER 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            ++    L+  Q  L+    + +G++R++  +  G++ +   L E    +P ++++    
Sbjct: 74  CAQALEDLDAAQHMLEAGRREVAGRVRVSAPVVFGRHHVAPLLLELADRHPQLRLEGNFT 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D + D  D AIR  +   S  L+ R L    M   AAP YL+    P SI +L  H
Sbjct: 134 DRLADFADDGIDLAIRSGRLPDSDMLVARPLGMQAMVLCAAPGYLRKHGTPASIADLASH 193

Query: 190 NLITF---GDLIPKCMEDFNW-LATVDRPIGEPRIS 221
             + +   G  +P       W LA  D  I  P ++
Sbjct: 194 RCLVYMHGGQSVP-------WSLAGPDGNIARPELA 222


>gi|307730931|ref|YP_003908155.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307585466|gb|ADN58864.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 327

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 117/278 (42%), Gaps = 47/278 (16%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAHQGSLSAAGRRMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYP++   L 
Sbjct: 67  NCCRQALQSLDDAKAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVTFALT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   ++  +  D AIR   P Q SSL+ RKL        A+P Y+    EP      D
Sbjct: 127 LSDSLTNLVQEDIDLAIRFGVP-QDSSLVARKLARNRRVLCASPEYIARKGEP-----KD 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE--------------PRISCLQVNSYLSIMQ 233
            ++L  F  ++         L+T   P+ E              P  +  Q N      +
Sbjct: 181 PNDLANFDCIV---------LSTGSGPVNEWRFTRGDEVQHYTVPLETARQTNDGAVARE 231

Query: 234 YCVLGSGIA------------------LLPDYIVKDNP 253
           + + G GIA                  LLPD+   D P
Sbjct: 232 WALRGYGIAVKSMWDVEADLRSDGLKILLPDWRYPDAP 269


>gi|193077960|gb|ABO12874.2| transcriptional regulator lysR family [Acinetobacter baumannii ATCC
           17978]
          Length = 298

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 103/194 (53%), Gaps = 13/194 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG- 63
           WD  + F VV   GSF+ AA +L ++Q ++  +I  LE ++G  LF R   GL  TE   
Sbjct: 7   WDDQKFFLVVLEEGSFSAAARKLGVTQPTVRTRIEHLEHQLGTVLFSRSVHGLKPTEHAL 66

Query: 64  -----SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
                ++  +  S+ + +  +  + L       +G +R++ +  LG  +L   L +F LL
Sbjct: 67  ALEVPARAMQRASDYFMRTASAPLNLI------AGSVRVSVSDFLGTMVLPQLLSKFRLL 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP++ I+L L+N   ++    AD AIR+  P+Q  +L+ +K+  + +  YA   Y++   
Sbjct: 121 YPEVNIELSLNNSSANLLEQEADLAIRMYPPVQ-EALVAKKIGEVPLGLYAHRDYIQRKG 179

Query: 179 EPLSIQELDKHNLI 192
            P  +++L +H+LI
Sbjct: 180 NPTCLEDLRQHDLI 193


>gi|191167601|ref|ZP_03029412.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|309795290|ref|ZP_07689708.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|190902362|gb|EDV62100.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|308120940|gb|EFO58202.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
          Length = 302

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 137/301 (45%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +         A P Y 
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               +P    +L  +  + F    P   + F+W    +  I       + ++   + ++ 
Sbjct: 175 ARYGKPRHPHDLLNYQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289
            ++G+GI  L    +K   D   L  ++ED  T  P F +Y  YP     +  L+AF ++
Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287

Query: 290 I 290
           +
Sbjct: 288 V 288


>gi|2501844|gb|AAC21675.1| transcriptional activator PtxR [Pseudomonas aeruginosa PAO1]
          Length = 312

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 13/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VA   SFT AAE L LS+S +S Q+  LE ++GI+L  R  R +TLT++G  
Sbjct: 14  NHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGEL 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V   +  +L+    ++++   +PSG+LRI    D  +  +      F+  +P +Q++
Sbjct: 74  LFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVE 133

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ D++  D+     D A+R+  P + S L   KL      A A P YL      L   +
Sbjct: 134 MLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPGYLAGLPPVLQPHD 192

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L +   I    L         W  T +R      +     L  N+ L++ +  + G+G++
Sbjct: 193 LARCEWIGHTRL------STPWTWTFERQRERATVQTRGRLLANNTLAVYRLVLDGAGVS 246

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +LP ++V        LVR++     P   +Y  YP A     +++AF
Sbjct: 247 VLPSFLVAREIARGRLVRLLFGWRLPQGGIYALYPSARYMPVRVRAF 293


>gi|299069759|emb|CBJ41038.1| Transcriptional regulator, LysR family precursor [Ralstonia
           solanacearum CMR15]
          Length = 303

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 131/293 (44%), Gaps = 12/293 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F    ++GSFT  A  L L++S++ + ++ LE+ +  +L  R  R L+LT+ G  ++  
Sbjct: 11  AFVSAVKTGSFTATAAALGLTRSAVGKSVARLESRLSTRLLQRTTRTLSLTDDGRAVYER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++   LE  +  +     +P+G L++   +  GQ  +   L  ++  +P+++  +   
Sbjct: 71  WRQILEDLEEVEATMAIRRGQPAGTLKLTAPLSFGQRHILPILDHYMKQWPELRADVRFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIR+  P   + L+ R +        A+P YL     P +  EL  H
Sbjct: 131 DRFVDVVEEGFDIAIRIGAPQDDTQLLTRTVAWQQFVTCASPTYLAARGMPQTPGELAGH 190

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + I F        +   W      P G         L ++S  ++ +  + G G+  LP 
Sbjct: 191 DTIAF----VSGEQPSPWRYRT--PEGLYLRESAGRLNMDSSEAMREAALAGFGLLHLPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           YI  ++     LV +++    P   +   YP     + +++AF + +  + +D
Sbjct: 245 YITGNDLRAGTLVEVLKPFRAPPDPIRVVYPSKRHLSPRIRAFIDLLVARWQD 297


>gi|146279324|ref|YP_001169482.1| hypothetical protein Rsph17025_3293 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557565|gb|ABP72177.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 312

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 8/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F WD L+ F  VAR+G  + AA QL  S  ++SR+I  LE  + ++LF R+ RG  LT 
Sbjct: 3   NFTWDDLQFFLAVARTGQLSRAARQLRTSHVTVSRRIDRLEAALRMRLFERNPRGYELTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +  + E  Q+EL        G LR+A     G    +  L  F   +P+
Sbjct: 63  VGRRLIETAERMEAETERMQVELLGDGPGQRGVLRMAVPEGFGSWFSRVLLGPFTSRFPN 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LI   + + +S   AD  + L  P +++     K+    +H YA   YL +     
Sbjct: 123 ISLELITLPQIMSLSRREADLTVTL-DPPKATPYHSEKITDYSLHIYATRSYLADHPPVR 181

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L KH  I +  ++I       ++L+ V   I     +  + +S  + +     G G
Sbjct: 182 HRDDLLKHPFIGYIEEMI--FAPGLDYLSEVHPGIR----ASFKSSSIFNQLAATRNGLG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + +LP YI +  P+L  ++   +    T +      ++   + ++  +F+  + R
Sbjct: 236 LCVLPFYIARMFPDLEMVLPHEVVLRRTYWLTCHRDVRPLPRERSVMSFLLEEGR 290


>gi|325916886|ref|ZP_08179134.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325536931|gb|EGD08679.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 325

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 139/292 (47%), Gaps = 13/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VA  GSFT AAE L L ++S+S  +  LE  +G +L +R  R + LT  G+ 
Sbjct: 27  ESLRAFLRVAELGSFTRAAETLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLTGDGAA 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ + ++   ++      Q    +  G+LR+  +  + +N +   L  FL  +P ++++
Sbjct: 87  FYQRSRDLLDDMDELHSMFQREHGQLRGRLRVDMSAGIARNFVIPALPAFLARHPQLEVE 146

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC +R+   ++ +SL+ R L    + + A+  YL     P  + +
Sbjct: 147 ISGTDRRVDVVREGFDCVLRV-GTLEDTSLVARPLGAFRIVSCASAEYLARRGMPTCLDD 205

Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L +H+L+    T G   P   E ++  A    P+  P    + VN+    +   + G GI
Sbjct: 206 LAQHDLVHYVPTLGQRSPG-FEYYDGQAYHLLPMRGP----VTVNNGDGYLAAALAGLGI 260

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P   ++   D+  L+ ++ ++      V   + +      +++AF +++
Sbjct: 261 IQAPASPLRPYLDSGALIEVLAELAPEPMPVTLLHAQRRHLPQRVRAFMDWV 312


>gi|324018945|gb|EGB88164.1| transcriptional regulator, LysR family [Escherichia coli MS 117-3]
          Length = 225

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 89/187 (47%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L 
Sbjct: 9   LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL 
Sbjct: 69  SVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L 
Sbjct: 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188

Query: 188 KHNLITF 194
            H  I  
Sbjct: 189 DHQAINL 195


>gi|295680773|ref|YP_003609347.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440668|gb|ADG19836.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 300

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 10/248 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF  V  +GSFT AAE+LHL++S+I + I+ LE  +G++L  R  R  TLTE G  
Sbjct: 5   DGVAVFVKVIEAGSFTVAAERLHLTRSAIGKVIAKLEARLGVRLLQRTTRSQTLTEAGRS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +L+  + EL+    +P G+LR++  +  G + +   L      +P +QI 
Sbjct: 65  YYDRCVRALAELDAAEAELETGYSEPRGRLRVSAPLAFGHHCVAPVLFGLARKHPQLQID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D A+R+     S+SL  R L        AAP YL     P+ I +
Sbjct: 125 ISFTDRAVDLVEENFDLAVRIGDLRDSTSLAARHLGVQETSIGAAPAYLARYGTPVDIGD 184

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGI 241
             KH  I +   G + P  + D +    V+R  + EP++S   ++   +I    V G G+
Sbjct: 185 FGKHAGIAYSRAGVVSPWRVLDTD---GVERELLIEPQLS---LDDIQAIAGAGVAGLGL 238

Query: 242 ALLPDYIV 249
             LP +++
Sbjct: 239 VQLPCWLL 246


>gi|260777132|ref|ZP_05886026.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606798|gb|EEX33072.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 297

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 136/297 (45%), Gaps = 21/297 (7%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +++ + S+IS+++  LE  +G++L  R  R +T TE
Sbjct: 1   MDWIQSVQSYIRVVDEGSFNGAARKMNTTSSAISKRVHWLEERIGVQLLKRTTRTVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  TI +G   L   L +FL +YPD
Sbjct: 61  AGALFYERAKVQLDGWQSIVDETRSVNQTPAGLLKIGATIAVGSKFLVQYLDDFLQMYPD 120

Query: 122 IQIQLILDNKD--IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA---YAAPHYLKN 176
           I+IQLI        ++S+D     + + + I+  + +  K   +  H    YA+P YL  
Sbjct: 121 IRIQLITTTPGQLPELSLD-----LFISREIEQLNSLSFKASALFEHKAGFYASPEYLDK 175

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             EP S+ EL  HN + +G+   + +     L    + I    ++     +     +  +
Sbjct: 176 YGEPQSVDELTGHNTLIWGERPHREIT----LTNGKKIILSGNLATTNPEALFYAAKNAM 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              GI +  D ++KD      L RI+  +     TVY  YP+      + K F +++
Sbjct: 232 ---GILISNDVMIKDELKAGTLKRILPRITADEATVYAYYPKLDYQHTRTKLFLDYL 285


>gi|152996162|ref|YP_001340997.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837086|gb|ABR71062.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 298

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 145/291 (49%), Gaps = 12/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V  + SF+ AAEQL++S++ +S+ IS LE ++G++L YR  R L+L+  G  
Sbjct: 7   EGIREFLAVVEAHSFSKAAEQLNISRARVSQIISRLEKDLGVQLLYRSTRSLSLSPAGET 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDL-GQNLLQGNLKEFLLLYPDIQI 124
            +++  +   +LE   +  Q +     G++RI +   L G+ +L   L  F+   P ++I
Sbjct: 67  FYQLARQGVDQLEHAVLSAQNAHSSIGGQIRINSVGGLFGEEILAPILIRFMNENPKVEI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +   D+     D  +R+   + +S+LI RKL +   +  A P Y  +  +  S +
Sbjct: 127 ELSFSSTREDLIESQYDLVVRM-GTLSNSNLIGRKLTSYTNYLVANPTYFDSMPKLNSPK 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243
           +L  H LI  G +        +     + P+ + ++ C    S   +++   L G+GI+ 
Sbjct: 186 DLLDHTLIN-GSVKRWSFTHISSKEKYELPV-QGKLKC----SNGHVVKLATLEGTGISR 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            P Y VK +     L+ ++ D   P+  V   YP++   + ++KA  +++ 
Sbjct: 240 QPSYYVKQDIQSGRLIVLLPDWQLPNSDVTLLYPQSRNISLRVKALVHYLM 290


>gi|90409204|ref|ZP_01217316.1| transcriptional regulator [Psychromonas sp. CNPT3]
 gi|90309692|gb|EAS37865.1| transcriptional regulator [Psychromonas sp. CNPT3]
          Length = 294

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 122/291 (41%), Gaps = 14/291 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D LR   +F  VA +GSF  AAE+++ S S IS++I  LE  VG +L  R  R + LTE 
Sbjct: 2   DTLRSMALFVKVAETGSFKQAAEEMNYSNSLISKEIGKLEQMVGARLLQRSTRKIHLTEI 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        ++    +     +QE   +P G+L+I   + LG   L      F  L+P++
Sbjct: 62  GLGYLERCRKILSADQEAHDYVQEMQGQPKGRLKINAPMTLGITDLSLAFAAFTELHPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +D+     D   R+       + + + + +  +H    P YL+N      
Sbjct: 122 ELDVDLSDEPVDLIAQGYDIGFRVSSTFIDVNYVGKPIASFSLHLVTTPKYLQNHGPIEC 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +HN   +     K         TV           L+ N+ + +    + G+ I 
Sbjct: 182 PEQLSEHNFYLYSLANSKNKLPIGGGITVK--------GNLKANNTIFLRDALLQGNAIG 233

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L P ++         LV ++ D   P    Y  YP       KL  F  F+
Sbjct: 234 LFPSFVCAKEIKSGLLVELLVDYPLPKLNFYVLYPSRHYTPPKLAKFVEFM 284


>gi|86144613|ref|ZP_01062945.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222]
 gi|85837512|gb|EAQ55624.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222]
          Length = 309

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 1/181 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V + GSFT AA    +  SS+S+QI  LE ++G++L  R  R  +LT  G  
Sbjct: 5   NQLLLFLDVVQQGSFTKAATLHDMDNSSLSKQIKKLEQDLGVQLLNRSTRSFSLTSAGED 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +   T  +   +   Q        +P G LRI + I  GQ  LQ  + +F+  YPD+QI 
Sbjct: 65  ILAQTYVLKDTINQIQGIADSYQSEPKGVLRITSPIYFGQQYLQPIITQFMRKYPDVQIV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD+K  +I     D A R  K ++ S+LI +K+   +    A+  ++K   EP + Q+
Sbjct: 125 LSLDDKIANIIAGQFDIAFRFSKLVE-SNLIAKKIADSNFMLVASNDFVKEHGEPKTPQD 183

Query: 186 L 186
           L
Sbjct: 184 L 184


>gi|84385422|ref|ZP_00988454.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01]
 gi|84380019|gb|EAP96870.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01]
          Length = 309

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 1/181 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V + GSFT AA    +  SS+S+QI  LE ++G++L  R  R  +LT  G  
Sbjct: 5   NQLLLFLDVVQQGSFTKAATLHDMDNSSLSKQIKKLEQDLGVQLLNRSTRSFSLTSAGED 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +   T  +   +   Q        +P G LRI + I  GQ  LQ  + +F+  YPD+QI 
Sbjct: 65  ILAQTYVLKDTINQIQGIADSYQSEPKGVLRITSPIYFGQQYLQPIITQFMRKYPDVQIV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD+K  +I     D A R  K ++ S+LI +K+   +    A+  ++K   EP + Q+
Sbjct: 125 LSLDDKIANIIAGQFDIAFRFSKLVE-SNLIAKKIADSNFMLVASNDFVKQHGEPKTPQD 183

Query: 186 L 186
           L
Sbjct: 184 L 184


>gi|119387183|ref|YP_918238.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377778|gb|ABL72542.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 297

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 122/263 (46%), Gaps = 10/263 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  VAR+ S + A  +L +  S++ R+++ LE  +G KLF +  +G  L  +
Sbjct: 1   MDWDDLRIFLAVARADSLSGAGRRLGIDASTVGRRVARLEGALGAKLFVKTPQGYALAPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      V   L   + E        +G+LRI         LL          +P +
Sbjct: 61  GERLLPHAEAVEAALSGAE-EALSGPGDLTGQLRIGAPDGCANYLLPQVCARLSEAHPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQ++   +  ++S   AD AI + +P Q+  L+ ++L    +H  A   YL+      S
Sbjct: 120 EIQIVALPRVFNLSKREADMAIAVSQP-QAGRLVVQRLTDYQLHLAAHEDYLRAHPPIRS 178

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L  H +I +  D+I     + ++L            + L  NS    MQ   +G+G+
Sbjct: 179 REDLRGHRMIGYIADMI--FDRELDYLTETG-----AEWAALTSNSVSVQMQAIRVGAGL 231

Query: 242 ALLPDYIVKDNPNLVRIMEDVIT 264
            ++ D+ +   P + R++ D I+
Sbjct: 232 GIVHDFAIPFCPGVRRVLADQIS 254


>gi|126443540|ref|YP_001063714.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126223031|gb|ABN86536.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 322

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 26/291 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 14  WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L R  +E    +E+T   L  ++        G +RI+ +  +G  +L   +      +P
Sbjct: 74  AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L L N+  D+    AD A+R+ +P Q + LI R +  I +  +A   YL  C  P
Sbjct: 130 ALTVELALTNRVQDLLRREADIAVRMTRPGQ-TQLIARHIGGIELGLHAHRDYLARCGTP 188

Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               EL +H LI       F   I K    F+  A             L+ +S L+ +  
Sbjct: 189 RDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----------ALRTDSDLAQLAL 237

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
              G+GI      + K +P LVR++         ++    E L+ + + +A
Sbjct: 238 IRCGAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 288


>gi|78063311|ref|YP_373219.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971196|gb|ABB12575.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 300

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 138/293 (47%), Gaps = 19/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++++  +   G+FT AA+ L L + ++++ +  LE E+G++L  R  R +++T +G   H
Sbjct: 7   MQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGVRLLNRSTRRVSVTAEGEAFH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++       +    P G+LRI   + L + ++   L +F   YP I++ L 
Sbjct: 67  ARCVQLLGSIDDAFASFPKQRAIPKGRLRIDIALALAKTVVIPALPDFQQRYPQIELVLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D+  +  DC +R+ K ++ SS++ R +  + M   A+P Y+     P ++ +L 
Sbjct: 127 ASDQPADLIGEGIDCVVRVGK-LKDSSMVARTVGAVPMVTCASPAYVSRHGLPRTLDDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F     + + ++ +     RP GE  +S    +S L+     +L  G+A L   
Sbjct: 186 THRAVNFFTGSNRKLLEWTF-----RPHGE-TVSVKLASSLLTDNSEALLSCGLAGL--G 237

Query: 248 IVK----------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IV           D+  L+ ++  V      V   YP     + K++AF +++
Sbjct: 238 IVHGLRPALQPSIDSGQLIELLPGVPAEPKPVSVLYPNRAHLSDKVRAFIDWL 290


>gi|89069746|ref|ZP_01157082.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89044692|gb|EAR50803.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 292

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 11/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  LE+ +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARKGTVSGAAEVLGVHHATVIRHIDSLESRLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L  V      +       ++      SG+L + T++     LL   L +F      +Q
Sbjct: 63  QDLLTVAQTTDDQFTQLAGRIRGRGEGVSGEL-VVTSLATLSALLAPVLVDFQRENEGLQ 121

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +  ++   +    A  A+R    P Q  +++Q   ++  +   A+  Y+    +P S
Sbjct: 122 VRYLTGSRLFRLEYGEAHVALRAGAAPEQPDNVVQ-PFLSQAIRMVASRDYIARRGKPES 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++L +H+ +   D +   +    W LA V R     R+   +     S++     G+GI
Sbjct: 181 VEDLKQHDFVGL-DPLDSRVPFMRWLLAQVPR----ERV-VFRTMENQSVVDAIAAGAGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             L ++ + D   +V ++  +      ++      L  T K++AF  F+  +A+ W F
Sbjct: 235 GFLCEWDI-DRERMVEVLPAMEEWQSRLWIVTHVDLHRTPKVQAFLKFLKERAKGWTF 291


>gi|330987281|gb|EGH85384.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 300

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 125/287 (43%), Gaps = 19/287 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  +ISR+++ LE ++G++LF+R  R ++LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E  +  L+  +   SG LR+      GQ ++   L   +L  P + I L 
Sbjct: 66  PHAKTILEANEAARTTLKADAGSASGVLRVTAPSVFGQTVIMPLLPALMLENPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L         +P YL    +P  ++EL 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCVSPDYLARHGKPALLEELR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243
            H  I         +    W        GEP     Q     NS  ++   C  G G+A+
Sbjct: 185 HHPCI--------ALHAMPWWPFTRN--GEPITIRAQGPFSANSVEAVRTACKQGMGLAM 234

Query: 244 LPDYIVKDNPNLVRI----MEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L  + V+   N   +     ED +    +V    P   +   +++ F
Sbjct: 235 LTYWDVRQEINEGSLQQVDFEDAMPEQLSVTAVLPTRQRVPHRVRQF 281


>gi|312883144|ref|ZP_07742875.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369304|gb|EFP96825.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 299

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 101/187 (54%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L++S+S +SRQI+ LE ++ + L  R  R L LT+ G + +
Sbjct: 10  IRSFVLIAQLGNFTKAAEALNVSRSHVSRQINSLEKQMQVTLLTRSTRSLKLTQAGKRFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                  + ++   I   + + +  G +R+      +G+ ++   +  F+L +P IQ+ L
Sbjct: 70  LQCERAINGIDQALIAAVDDTKEVRGLIRVNCVGGYIGEKIISRYVAAFMLEHPQIQVHL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID+  D  D A R+ + ++ SS I +KL+ + + + A+P Y+     P    EL
Sbjct: 130 DFSSNRIDLIQDDFDIAFRMGE-LEDSSFIAKKLMDVDIVSLASPSYVHKYGNPQHPNEL 188

Query: 187 DKHNLIT 193
            +H  +T
Sbjct: 189 AEHRCLT 195


>gi|190892732|ref|YP_001979274.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190698011|gb|ACE92096.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 301

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 123/280 (43%), Gaps = 6/280 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V + GS + AA +L L+Q +I R +  LE  +G +LF R   GL  T+   
Sbjct: 7   WDFYRSFLTVLQHGSLSAAARELGLTQPTIGRHVDALELAIGAELFTRSPNGLLPTDAAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                + +G +RI+ +  +   +L   L      +P++QI
Sbjct: 67  ALKPYAETLAATTAALLRTASSQRERVAGTIRISASEVIAVEVLPAILGPLQDAHPELQI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +   D+    AD A+R+ +P Q  +L+ R++  I +  +A   YL+    P S+ 
Sbjct: 127 ELSASDAIEDLVNREADIAVRMAEP-QQDALVVRRIGDIPLGFHAHRRYLERYGIPQSVA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI F          +  L     P+ +      + +S L+ +     G GI L 
Sbjct: 186 DLANHRLIGF-----DRQTAYVRLVMKRYPVPDGIKFAYRTDSNLAQLAAIRAGVGIGLC 240

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
              + ++NP+LV ++ D        +    E+LK++ + +
Sbjct: 241 QIGLARENPDLVHLLADAFNIPLGTWVAMHESLKSSPRCR 280


>gi|330953396|gb|EGH53656.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 305

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 117/246 (47%), Gaps = 4/246 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    P ++ 
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQYGTPRNLN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL +H +I +            ++A  D    E   +C + VNS    +  C  G G+  
Sbjct: 183 ELAQHQVIEYFSTSTGKRYGLEFMA--DGMDVEHASACSIAVNSADGYVAACEAGFGLIQ 240

Query: 244 LPDYIV 249
           +P Y V
Sbjct: 241 VPRYHV 246


>gi|316932287|ref|YP_004107269.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315600001|gb|ADU42536.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           DX-1]
          Length = 298

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 131/301 (43%), Gaps = 17/301 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   +R F  V   GSF   A +L +  S++S+++  LE  +G++L  R  R + +T +
Sbjct: 7   LDLSAVRAFQSVVLEGSFAGGARRLGVPLSTVSKRVRDLEARLGLRLIERTTRKMRVTAE 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    + +  + +T    + E+   P G LRIA    LGQ L+ G        +P+I
Sbjct: 67  GEALANHATRLLAEADTLLRAMTETGTAPRGHLRIAAPNLLGQLLIGGVAALCRARFPEI 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYLKNCREP 180
            ++ +  +   D+  D  D  IR   P++ SS I RKL++  +   AAP  + +     P
Sbjct: 127 TLEFVFTDAPPDLIEDRFDAVIRF-GPLEDSSQIARKLLSGAVRLVAAPGLNGIDRIAHP 185

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLG 238
             +  L   +      + P     + +    D      EP IS     S L+     + G
Sbjct: 186 RDVANLPIIH------VSPPWSHAWMFQRESDEVTVRFEPAIS---FPSMLAARDAVIAG 236

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +G+ +LP  +     N   LVR++ +   P   +Y  Y      T +L+AF + +    R
Sbjct: 237 AGLTMLPGILAAPEINAGRLVRLLPEWTGPEKAMYVVYGAPDSITPRLRAFLDILTENLR 296

Query: 296 D 296
           D
Sbjct: 297 D 297


>gi|90577391|ref|ZP_01233202.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90440477|gb|EAS65657.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 305

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 135/296 (45%), Gaps = 12/296 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+V   VA   S T AA  L +  ++ S  +  +E  +G+++F R  R L L+  G +
Sbjct: 4   EDLQVILKVAEFRSITAAATNLDIRTATASAAVKRVEAYLGVEIFVRSTRHLRLSSAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E    LE  ++ +QE      G++RIA + DLG+NL+   L EFLL YP++ ++
Sbjct: 64  YLPQCEEALKMLEHAKVNMQEELGIIDGEIRIALSSDLGRNLVTPWLDEFLLQYPNVSLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + + +ID   D  D A+R   P    +L   K+  +     A+P YL     P    +
Sbjct: 124 SSISDSNIDFYRDSVDMALRYGSPTD-QNLYGFKICDVPRVVCASPSYLAENNTPTHPSD 182

Query: 186 LDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
           L +HN + +   D++        WL + +    + ++   +  N    + ++CV G G+A
Sbjct: 183 LLEHNALFYQLYDVLQN-----EWLFSNEETTHKVKLKGNRASNDGDLVRRWCVAGKGVA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +     + D+     ++ IM++  T    ++   P     T  ++  R+    K +
Sbjct: 238 IKSSLDMSDDLLAGRVLSIMQEYKTAPTELWLVCPSRQSVTPTVRLLRDLFRDKTK 293


>gi|16264224|ref|NP_437016.1| putative transcriptional regulator protein [Sinorhizobium meliloti
           1021]
 gi|307316716|ref|ZP_07596159.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15140349|emb|CAC48876.1| putative transcriptional regulator protein [Sinorhizobium meliloti
           1021]
 gi|306897914|gb|EFN28657.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 298

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +RVF  VA   SFT AAE L L +S+I+  +  LE  +G++L  R  R +  T  G 
Sbjct: 4   FDAMRVFARVAERRSFTLAAEDLGLPRSTITDAVKQLEGRLGVRLLQRTTRVVRTTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +     S   PSG LRI       ++ L   LK FL  YPDI++
Sbjct: 64  AYYHRCVRLIADLEDAEAVF--SGASPSGLLRIDVHGTQARHFLLPGLKVFLDRYPDIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +DI  +  DC +R    +  S LI RKL  +    +A+P YL     P   +
Sbjct: 122 HISETHQPVDIVREGYDCIVRAGH-LADSPLIGRKLAELKRGTFASPEYLARFGTPHVPE 180

Query: 185 EL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L D H ++         +  F + +A   R +  P +  +      ++   C  G G+ 
Sbjct: 181 DLFDGHQMVGLLSSDTPSVAPFAFVVAGKARELTLPTVVTV-TGPETNVASACA-GLGLI 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +P Y V     +  LV ++ D       V+  Y    + + +L+ F ++I  + R
Sbjct: 239 QVPRYRVASELASGALVEVLTDFPPSPLPVHVLYSHTRQLSPRLRVFIDWITERYR 294


>gi|304395242|ref|ZP_07377126.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304357495|gb|EFM21858.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 292

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 99/190 (52%), Gaps = 1/190 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR++  V  +G+FT AAEQL LS+  +SR+++ LE  +G++L  R+ R L++T+ G  
Sbjct: 4   EDLRIYVAVMHAGNFTAAAEQLMLSKQYVSRRMAALEASLGVRLLIRNTRKLSVTDAGLL 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    +  +++  ++ + E      G  RI   +  G + L   + EFL  +P +Q Q
Sbjct: 64  FAQHAQRILDEIQEAELAVSEQQQALRGTFRINMPMSFGMSHLSPLIAEFLSHHPALQFQ 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++  D+  +  D AIR+   +  S+LI R L  +      +P YL+    P   + 
Sbjct: 124 IELADRYADVIGEGVDMAIRI-GTLADSTLIARPLGELKRVICCSPRYLERAGTPQQPEA 182

Query: 186 LDKHNLITFG 195
           L +H  + +G
Sbjct: 183 LLQHACLRYG 192


>gi|300714966|ref|YP_003739769.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299060802|emb|CAX57909.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 302

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 122/268 (45%), Gaps = 5/268 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F      GSFT AA+ LHL+ S+IS+ ++ LE  +G +LF R  R L LT+ G   +   
Sbjct: 13  FVASVEHGSFTAAADSLHLTSSAISKSVARLEARLGSRLFERTTRRLALTDAGQAFYETC 72

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + V  +L   +  L      P G+LRIA     G+  +   + EF    P++QI L   +
Sbjct: 73  TRVLSELAEAESVLAAQRAIPVGRLRIAVPNTFGRMQVMPLINEFCQQNPEMQIALSFSD 132

Query: 131 KDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  +  D AIR+   P    SL  R L    +   A+P YL     P S+Q L + 
Sbjct: 133 RFVDLFEEGVDIAIRIGGSPDFPPSLGYRFLGNERLIFCASPDYLAQHGVPDSLQALTER 192

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I + D +      ++  +   R I       + +    + +   V G G+A +  +++
Sbjct: 193 RAIVY-DRVDGSTSPWHIRSPDGRTITRTLPYRMALGDGEAQVAAVVAGLGVAQMATWLM 251

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYP 274
           +    +  LVRI+ ++      ++  +P
Sbjct: 252 EKELASGALVRILPELAVEGLPLFIVWP 279


>gi|218675955|ref|YP_002394774.1| Transcriptional regulator, AsnC family [Vibrio splendidus LGP32]
 gi|218324223|emb|CAV25484.1| Transcriptional regulator, AsnC family [Vibrio splendidus LGP32]
          Length = 309

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 1/181 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V + GSFT AA    +  SS+S+QI  LE ++G++L  R  R  +LT  G  
Sbjct: 5   NQLLLFLDVVQQGSFTKAATLHDMDNSSLSKQIKKLEQDLGVQLLNRSTRSFSLTSAGED 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +   T  +   +   Q        +P G LRI + I  GQ  LQ  + +F+  YPD+QI 
Sbjct: 65  ILAQTYVLKDTINQIQGIADSYQSEPKGVLRITSPIYFGQQYLQPIITQFMRKYPDVQIV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD+K  +I     D A R  K ++ S+LI +K+   +    A+  ++K   EP + Q+
Sbjct: 125 LSLDDKIANIIAGQFDIAFRFSKLVE-SNLIAKKIADSNFMLVASNDFVKEHGEPKTPQD 183

Query: 186 L 186
           L
Sbjct: 184 L 184


>gi|325528096|gb|EGD05303.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 319

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  + G TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++ + ++  +    SG +R+ +T   G   L   L  F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSARDQIANTGEALSGHVRVGSTEGFGCFFLAPQLARFRAAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     + ++   AD AI L +P +    +  KL    +  YA   YL N    
Sbjct: 131 QVTVDLLPVPHFVSLTKREADLAITLERP-ERGPYVCTKLCDYQLRLYATRDYLANHAPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
               +L +H  I++ D +    E    L  ++R +  P  S  L+  S ++     + G 
Sbjct: 190 TCTDDLAQHAFISYVDDLAFSSE----LLYLERAV--PGASAGLRTTSVIAQYFAALQGG 243

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A+LP ++    P LV ++   +  +   +    E L+   ++ A  +++
Sbjct: 244 GLAILPCFMAARQPALVPVLPGEVAVTRCFWLTCREDLRKLRRVTALWDYL 294


>gi|326404632|ref|YP_004284714.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325051494|dbj|BAJ81832.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 305

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 126/286 (44%), Gaps = 14/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF      GS   A  +  LS S   + +S +E ++G++L  R  R L LT+ G    
Sbjct: 7   MSVFVAAVEEGSLVGAGRRFGLSPSMAGKHVSAIEDQLGVRLLQRSTRVLKLTDVGQAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +    E    E Q +     G LR+A     G   L   +  +L  YP++ ++  
Sbjct: 67  KRCKLILEDYEDANREAQRAHQTVRGVLRVAAPTTFGAIHLGPVVARYLAAYPEVTVETT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+ M+  D AIR+ + ++ S L+ ++L   HM   AAP +L     P ++++L 
Sbjct: 127 LSDRYVDLLMESIDVAIRIGR-LKDSDLVAQRLAPCHMVFCAAPSFLARHGVPKTVEQLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS----CLQVNSYLSIMQYCVLGSGIAL 243
           +   + F + +       +W  T+  P G   +      L VN+   ++   + G G+A 
Sbjct: 186 QAPRVAFTEAVSAG----DW--TLTDPSGRTHLIDGPLRLAVNNMQMLLAAALAGIGVAY 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            P ++  +   +  L  +M    T    ++  YP     + KL+ F
Sbjct: 240 GPSFVFGESIASGTLQILMSQHKTSELAIHAIYPTKRHVSLKLRRF 285


>gi|323528951|ref|YP_004231103.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385953|gb|ADX58043.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 306

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 23/292 (7%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           VA +G F+ AA++L ++ SS++R +  LE  +G  L  R  R ++LT+ G       S+V
Sbjct: 13  VADAGGFSKAAQRLGVATSSVTRLMDSLEASLGAALLTRTPRKVSLTDAGLAYVEQVSKV 72

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              L      + +S   P G LR++      +  L  +L  FL  +P + + + + ++ +
Sbjct: 73  IDDLAEADESVFDSGAAPVGSLRVSVPSTYSRLCLAPHLAAFLAEHPRVVLDVAVGDQFV 132

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+++D  D AIR+    + ++L+ +KL     +  A+  YL+    P +  +L  H  + 
Sbjct: 133 DLAVDRIDVAIRIGFAERDANLVVKKLADNPRYVVASHDYLQRSGTPRTPADLAGHECVR 192

Query: 194 F---GDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPDY 247
           F   G    + +    W  T +R   E R+     L  N+   + +  V G GIALLP +
Sbjct: 193 FAYGGGYRARQI----W--TFERDGVEERVDVRGHLLSNNLDILFEAAVAGRGIALLPAW 246

Query: 248 IVKDNPNLVRIMEDVITPSF---------TVYFCYPEALKNTGKLKAFRNFI 290
            V    +  R+M   +  SF          VY  Y    + + K++AF  F+
Sbjct: 247 QVAAEIHAGRLMR--LFESFDARPHSGDAVVYAAYLPNRRQSSKVRAFVQFL 296


>gi|227356652|ref|ZP_03841038.1| LysR family transcriptional regulator [Proteus mirabilis ATCC
           29906]
 gi|227163160|gb|EEI48091.1| LysR family transcriptional regulator [Proteus mirabilis ATCC
           29906]
          Length = 297

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 144/314 (45%), Gaps = 41/314 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++R F  V  +GSFT AA+ L LS+S +S  I  LETE+ + L  R+ R  TLT
Sbjct: 1   MQNQIDRIRSFIAVVDTGSFTQAAKYLRLSKSMVSIHIKALETELNVSLLNRNTRRFTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L++   +V  +LE T  + +       G LR+ +T + G++ +   L +F+ L+P
Sbjct: 61  ETGEILYQDFRQVLVQLEQTLDKARLGQQNLQGTLRLTSTAEFGEHYILPLLHQFMCLHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q I ++   D+     D AIRL   ++ S+   RKL    +    +PH LK     
Sbjct: 121 QLKVQYIFNSSIDDLINHKLDLAIRL-GALKDSNYRYRKLADYTIKLVVSPHLLKKY--- 176

Query: 181 LSIQELD-------------KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227
             IQE+              +H+ ++  D I +     + +A              + N+
Sbjct: 177 -PIQEIADLAAVPYLANSNLRHSKLSQQDKINQLFSQLHSMA------------LFETNT 223

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDV-----ITPSFTVYFCYPEALKNTGK 282
             ++ Q  +   G+ +LP++ ++       ++  +     +  S +V F + E +    +
Sbjct: 224 ISALKQMALKQMGMTILPEWYIQQEITQGELVSPIPELTLLNQSISVIFPHGEHMPRKTR 283

Query: 283 LKAFRNFI-FLKAR 295
           L     FI FLK R
Sbjct: 284 L-----FIDFLKER 292


>gi|169634895|ref|YP_001708631.1| putative transcriptional regulator; transcriptional activator
           [Acinetobacter baumannii SDF]
 gi|169153687|emb|CAP02885.1| putative transcriptional regulator; transcriptional activator
           [Acinetobacter baumannii]
          Length = 300

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 146/300 (48%), Gaps = 20/300 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT++G +
Sbjct: 6   EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++ ++L   + ELQ+S    +G LR+ +      +++   + +F   YPDI+I+
Sbjct: 66  FLIKARKILNELNAAEEELQKSDQGTAGLLRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P   +E
Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTPTQPEE 184

Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L++H+LI F      +  P  + D  + A           S ++ +S  ++ Q  + G G
Sbjct: 185 LEQHDLIGFTRPTYINSWPIKVGDEYFFAQ----------SKIKASSGETVRQLTIRGHG 234

Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ I KD     L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|160899980|ref|YP_001565562.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365564|gb|ABX37177.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 300

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 99/191 (51%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +RVF  V  +  FT A ++L ++ S+ SR +  LE+E+G +L  R++RGL+LT+ G 
Sbjct: 4   WQAMRVFCGVVDAQGFTAAQDRLGMTHSTASRHVKWLESELGTQLLQRNSRGLSLTDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++  +L+  +  L +   + +G LRI   + +G   L   L EF   +P++++
Sbjct: 64  SYYLSCVQLLEQLDAAEAALAQRRARVAGVLRITLPLAVGAIELGDWLPEFEQQFPELEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL+  ++ +D+  +  D A+R+ + +  S L  R L    +   A+P YL          
Sbjct: 124 QLLCTDRLVDLVAEGVDAAVRISRQLPDSGLQARLLTHSPLVLVASPAYLMRQGVVQVPG 183

Query: 185 ELDKHNLITFG 195
           +L +H  + F 
Sbjct: 184 QLAEHRALAFA 194


>gi|89068516|ref|ZP_01155913.1| probable transcription regulator protein [Oceanicola granulosus
           HTCC2516]
 gi|89045935|gb|EAR51995.1| probable transcription regulator protein [Oceanicola granulosus
           HTCC2516]
          Length = 296

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 135/294 (45%), Gaps = 26/294 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF  AAE+LH++ +++S QI  LE ++G+ LF R  R +  T+   +  
Sbjct: 11  LRTFEAAARHESFKRAAEELHVTNAAVSHQIKTLEDKLGLSLFRRRGRAVQPTDAAKRFA 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++ +  +E   +ELQ + +  SG LRIA T   G  ++   L  F  LYP+I+++  
Sbjct: 71  GRLAQAFDTIEAATMELQGNPM--SGTLRIAVTPFYGNRIVLPRLSRFHALYPEIRVEPE 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-----AYAAPHYLKNCREPLS 182
           +    I+ +    D A+R        +     L  I MH       AAP  +     PLS
Sbjct: 129 MSETRINFAKTDLDGALRY------GTGNWPGLTAIAMHEDQLLPVAAPTVVSRRDLPLS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS---IMQYCVLGS 239
             E+ +   +T G +     ED +W A  +  +G   ++  Q+  Y S   ++     G 
Sbjct: 183 AAEIAQ---LTLGYI--DGQED-DWSAWFEM-MGYEGVASTQMIGYGSRARVVDLAFSGH 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+AL    +   +    +LVR+ +  ++    ++  YP+      +L AF ++ 
Sbjct: 236 GVALADRRLTAADVTAGHLVRLNDTPVSTGRGIWLVYPDTEFPDPRLMAFGDWF 289


>gi|115359776|ref|YP_776914.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285064|gb|ABI90580.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 302

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 19/254 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   GS T  A  L  + S +SR I+ LET +G++L  R  R L+LTEQG    
Sbjct: 11  VEAFVTVIEKGSMTAGAVALGSTPSVLSRAITRLETRLGVQLLRRSTRRLSLTEQGRLYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +   +  ++  +  +Q      +G +RI+     G   L   L++F   +P+++++L 
Sbjct: 71  EQSRAAFLLIDDAERAIQGHGGTLTGHVRISVPTTYGHYRLPPLLRQFTQQHPEVRVELN 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+++D+  +  D AIRL + +  S L+ RKL    +   A+P Y+     P ++ +L 
Sbjct: 131 IANRNVDLVAEGFDLAIRLGE-LPDSGLVARKLEDAALCLVASPEYVARAGVPENVADLA 189

Query: 188 KHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H  + F     G + P       +D +WL         P  +    +  L ++     G
Sbjct: 190 HHLCLPFMLPSSGRIAPWVFRDDGQDIDWL---------PPSNVAVSDDVLGVVSMAQSG 240

Query: 239 SGIALLPDYIVKDN 252
           +GI    D+IV+D 
Sbjct: 241 AGICQTYDFIVQDR 254


>gi|260463108|ref|ZP_05811311.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031229|gb|EEW32502.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 297

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 137/301 (45%), Gaps = 22/301 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V    SFT AA  L L +S+ +  I  LE  +G +L  R  R +  T+ G  
Sbjct: 5   DTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQDGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    +  ++E  +   +  + +P G LRI  +  L +  L   L EFL  +  I +Q
Sbjct: 65  YYRRCLSILAEIEDAEAAFR--NAEPFGLLRIDASTLLTRTFLLPRLPEFLARHSRIDLQ 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC IR+ +P   S +I R+L  I     A+P YL+    P S   
Sbjct: 123 IGQSDRLVDLVREGVDCVIRVGEP-PDSGMIMRRLAMIREMTCASPAYLERHGTPASPDA 181

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           LD H  + F     G+++P     F +  TV     E R+   +  N+  +      LG 
Sbjct: 182 LDGHQAVGFVSSRTGEVLP-----FEF--TVGGKTREVRLPGRVAANNSDTAADLARLGL 234

Query: 240 GIALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLK 293
           G+   P Y   KD  +  L+ ++ D       +   YP+  + + +L+ F ++   IF +
Sbjct: 235 GLIQAPRYRFEKDLADGTLIEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWAARIFAE 294

Query: 294 A 294
           A
Sbjct: 295 A 295


>gi|255605119|ref|XP_002538342.1| HTH-type transcriptional activator aaeR, putative [Ricinus
           communis]
 gi|223512645|gb|EEF24040.1| HTH-type transcriptional activator aaeR, putative [Ricinus
           communis]
          Length = 192

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 4/193 (2%)

Query: 1   MSFDW---DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MSFD      + V   V   GSF   AE + ++ S +SR I  LET +G++L  R  R +
Sbjct: 1   MSFDGRILSGVSVLAAVVEGGSFVKGAELIGITDSGVSRAIGRLETRLGVRLLDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +       + +E   + +  ++    G+L++         +L G L  F  
Sbjct: 61  TLTDEGRRFYEEVKPHLNAIEDAAVVVSGAATAVRGRLKVDIDPFFLPLVLAGRLGGFCE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPD+ I+ +      D+  D  D AIR  +P + +SLI RKL+   +   A+P YL+  
Sbjct: 121 RYPDLSIEFVTREHVGDLVADGIDLAIRFGQP-RFASLIARKLIEAPILTVASPRYLERH 179

Query: 178 REPLSIQELDKHN 190
             P   ++L  H 
Sbjct: 180 GRPAHPRDLSVHR 192


>gi|218675083|ref|ZP_03524752.1| LysR family transcriptional regulator [Rhizobium etli GR56]
          Length = 299

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ ++R F  VA+  SFT AA +L LS+S++S  +S LE  +GI+L  R  R +  T  G
Sbjct: 5   EFTEMRAFLEVAKERSFTRAAAKLGLSRSALSHTVSALEERLGIRLLSRTTRDVAPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +        +  +      +     KPSG +R+    D  + + +  L  FL  +PD+ 
Sbjct: 65  ERFMESIQPHFESITAGISAISALRDKPSGDIRVVCPDDAVELVFRPRLSAFLRDFPDVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+DN   +I     D  +RL + +    +  R    +     A+P YL+    P   
Sbjct: 125 VEIIVDNGFTNIVERQFDAGVRLGEAVARDMVAVRIGPDVSYSVVASPDYLERHGPPSIP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L  HN +     +P     + W    D      R+   L +++    +   + G G+A
Sbjct: 185 QDLTGHNCVNL--RLPTSGGLYAWEFERDGREFSVRVEGQLTLSNIAPAIDAALDGIGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P  +V    +   L +++ D   P+F  Y  Y  + +N     AF  F+
Sbjct: 243 YVPTDLVSQHVERGRLRQVLSD-WCPTFQGYHLYYPSRRNPS--PAFSAFV 290


>gi|167570164|ref|ZP_02363038.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 301

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE  +G++L  R  R  TLTE+G
Sbjct: 5   DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTREQTLTEEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H    ++  ++E  +  +++      G LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVKILAEIEQAETLMRDKRGTVGGALRITAPGELGRLRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDIDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAERGMPAHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+  P+      W      P+     +    N   +   + + G+GIAL
Sbjct: 184 ADLCAHRCIVMGEQ-PR----VEWRFDGPEPVAVEVSAAFLTNDGGAARTFALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V  +     L R++ +  + +  ++  YP       +++ F +++  + R
Sbjct: 239 KSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGAELR 293


>gi|157368892|ref|YP_001476881.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320656|gb|ABV39753.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 314

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 98/190 (51%), Gaps = 1/190 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T +G+  +
Sbjct: 7   MRIFTRIVELGSFSRAAERLQLPRATVSNALKRLEQRLGVRLLIRTTRQVQVTSEGTLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   LE          ++PSGK+RI     L + ++   L +F   YPD+ + L 
Sbjct: 67  QRCVQLLGALEEADTLFSHHKLQPSGKVRIDMPHSLAREIVIPALDDFYQRYPDLTLALG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  +D+  +  DC +R  +  +  SL+ R++  +     A+P YL     P SI +L 
Sbjct: 127 ANDTHVDLLREGVDCVLRAWE-TEDDSLVARRIAMLPQLTCASPGYLAAFGVPQSIDQLQ 185

Query: 188 KHNLITFGDL 197
           +H  + +  L
Sbjct: 186 QHQAVGYFSL 195


>gi|313500574|gb|ADR61940.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 316

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 10  ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +    
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQGYLDSHTPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L KH  I++ D +    E   +LA +         S   +  Y + +Q    G G
Sbjct: 189 RQVTDLAKHPFISYVDDLAFSSE-LLYLANLIPNASAHLRSTSVIAQYTAALQ----GRG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +P LV ++ + I  +   +    E L+   ++    ++I
Sbjct: 244 LAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 293


>gi|319761568|ref|YP_004125505.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|317116129|gb|ADU98617.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
          Length = 308

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 138/295 (46%), Gaps = 22/295 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD LR+F  V R+ S   AA ++ +  S+I+R++  LE E+G +LF R   G  LT  G
Sbjct: 7   NWDNLRLFLAVVRAQSAQEAARRMEVDHSTITRRLHRLEKELGAQLFERTPAGHLLTPAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQE----SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            +L     E   ++E++ + + E     S   +G +R+  T   G   L  +L  F   +
Sbjct: 67  QRL----LEHVERMESSMVLVGEDIGGDSHMLTGHVRLGATEGFGSFFLAPHLSYFCDRH 122

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P IQ++L++  + I++S   AD A+ + +P Q S  +  KL    +  YA+  YL+    
Sbjct: 123 PGIQVELLIVPRFINLSQREADLAVNIERP-QRSGQVCSKLTDYRLRLYASRSYLQGQPP 181

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVL 237
              +++L  H    + + +    E   +L ++  D P        + + S   + QY  +
Sbjct: 182 IRRLRDLAAHRFFGYVEELVFSQE-LRYLTSIMPDAP--------MSLRSTSVVAQYNAV 232

Query: 238 --GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G G+A+LP ++      L  ++   +    T +   P   +   +++A  +++
Sbjct: 233 REGRGLAVLPCFMAAQCAELEPVLPHEVDVLRTFWLAAPADRRELARVRALWDYL 287


>gi|218553486|ref|YP_002386399.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|260854191|ref|YP_003228082.1| putative transcriptional regulator, LYSR-type [Escherichia coli
           O26:H11 str. 11368]
 gi|260867072|ref|YP_003233474.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O111:H- str. 11128]
 gi|300823639|ref|ZP_07103766.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300921066|ref|ZP_07137450.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|307311713|ref|ZP_07591353.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|331676688|ref|ZP_08377384.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|218360254|emb|CAQ97804.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|257752840|dbj|BAI24342.1| putative transcriptional regulator, LYSR-type [Escherichia coli
           O26:H11 str. 11368]
 gi|257763428|dbj|BAI34923.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O111:H- str. 11128]
 gi|300411917|gb|EFJ95227.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300523839|gb|EFK44908.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|306908268|gb|EFN38767.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|315060185|gb|ADT74512.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|320202296|gb|EFW76867.1| Putative LysR-like transcriptional regulator [Escherichia coli
           EC4100B]
 gi|323157213|gb|EFZ43336.1| hypothetical protein ECEPECA14_1004 [Escherichia coli EPECa14]
 gi|323379258|gb|ADX51526.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323947311|gb|EGB43319.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|331075377|gb|EGI46675.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
          Length = 302

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 136/301 (45%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +         A P Y 
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               +P    +L  H  + F    P   + F+W    +  I       + ++   + ++ 
Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289
            ++G+GI  L    +K   D   L  ++ D  T  P F +Y  YP     +  L+AF ++
Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLGDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287

Query: 290 I 290
           +
Sbjct: 288 V 288


>gi|167589844|ref|ZP_02382232.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 324

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 25/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSF+  A+++ +S S+++R++S +E  +G+ L +R    +TLTE GS  H
Sbjct: 16  MRAFVRVVETGSFSAVAKEMRVSTSTVARKVSAIEEALGVPLLHRSTHSVTLTEAGSIYH 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+ + 
Sbjct: 76  ERAVTLIADLDDTLRVVAELNARPSGPLKLTAPVAFGRRHLAPLIAPFLAQYPTIQLDVR 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D  I   +     +L+ ++L        A+P YL  C  P    EL 
Sbjct: 136 LTDNHNDLVAGGFDLDIHEGENYL-DNLVAQRLSRNDSILCASPAYLDRCGRPAEPHELA 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGIA 242
            HN + +  + P+   D  W   VD    + R S L   + +S     ++     G GIA
Sbjct: 195 SHNCLRY--VHPEG--DPRW-ELVD---ADARHSILPAGNLVSDHSELLLDATRAGLGIA 246

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT---------VYFCYPEALKNTGKLKAFRNFI 290
               ++V+D   L     +V+ P +          +Y  Y    +++ KL+  R F+
Sbjct: 247 EFEIWLVRD--LLASGQLEVVLPRYRLQNKLTGDFIYMAYLANRRSSAKLRVLREFL 301


>gi|330888402|gb|EGH21063.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 298

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 8   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +  +L  YP   + L++
Sbjct: 68  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSVDLLI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P S QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGHCDSVVCASPAYLAMHGTPSSPQELAA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K + +F        P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 187 HNCLTY-SYFGKSLWEFT---RQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  L+ ++ D    +  ++  Y      +  L+   +F+
Sbjct: 243 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 287


>gi|329295761|ref|ZP_08253097.1| transcriptional regulator [Plautia stali symbiont]
          Length = 305

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 130/290 (44%), Gaps = 15/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSFT AA QL LS SSIS+ ++ LE E+ +K   R  R L LTE G   +
Sbjct: 7   MSIFAKVVELGSFTAAARQLQLSVSSISQIVARLEDELQVKRLNRSTRSLGLTEAGKIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVK--PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +    +    ET+Q+  Q  + K  P G LRI  +  + QN+L     E L  YP + + 
Sbjct: 67  QGCRRMLA--ETSQVHEQLYAFKNTPIGILRIGCSTAMAQNVLSAMTSEMLHEYPGLSVN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+      D+  +  D  IR+ + +Q S+L  R+L  + M   AA  YL     P    E
Sbjct: 125 LMTGIPTPDLIANGLDVVIRVGE-LQDSNLFSRRLGAMPMVVCAAKSYLAQHGTPEKPAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +D  + + +        E       V R   + R      N   +++++   G GIA +P
Sbjct: 184 IDNFSWLEYSVRPDNTFELVAPEGLVTRLTPQGRFV---TNDSQTLIRWLKAGCGIAYVP 240

Query: 246 DYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
              V D  N   I  D++ P +      VY  Y E  K   K++   N++
Sbjct: 241 LMWVIDEINAGEI--DILFPQYHSEPRPVYAVYTEKDKLPLKVQVCINYL 288


>gi|319787805|ref|YP_004147280.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466317|gb|ADV28049.1| transcriptional regulator, LysR family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 302

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 134/303 (44%), Gaps = 33/303 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  VA +GSFT AA  L L+++++++ +  LE  + ++L  R  R +TLT  GS 
Sbjct: 5   DAMQAFVRVAETGSFTRAATDLGLARATVTQLVQQLEARLRVRLLDRTTRRVTLTADGSA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   L+  +  L   +    G+LR+     L + ++   L  F   +P+I++ 
Sbjct: 65  FLERALRLLADLDDAETGLPGQAAAARGRLRVDMPSPLARLVVVPALPAFHARHPEIELV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+     DC +R  + +   SL+ R+L  + +  YAAP YL+    P    E
Sbjct: 125 LGASDRVVDLMGANVDCVVRGGE-LADGSLVARRLARLALGVYAAPAYLERHGTPAHPGE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI--------------GEPRISCLQVNSYLSI 231
           L+     + G         F W A+  RP+                PR++    N+Y   
Sbjct: 184 LEGAAHRSVG---------FLW-ASSGRPLQPVLRRGTEQVQVRARPRLAVDDGNAY--- 230

Query: 232 MQYCVL-GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            Q  VL G G+A +P Y+   +     LV +  D       +   +    +   +L+AF 
Sbjct: 231 -QAAVLAGLGVAWMPRYMADAHVARGELVELFADWRLAPMPLSLAWRPRPQVGARLRAFI 289

Query: 288 NFI 290
           +++
Sbjct: 290 DWM 292


>gi|152988323|ref|YP_001348343.1| transcriptional regulator PtxR [Pseudomonas aeruginosa PA7]
 gi|150963481|gb|ABR85506.1| transcriptional regulator PtxR [Pseudomonas aeruginosa PA7]
          Length = 312

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 140/292 (47%), Gaps = 23/292 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  +A   SFT AAE L LS+S +S Q+  LE ++GI+L  R  R +TLT++G  
Sbjct: 14  NHLYAFVAIAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGEL 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V   +  +L+    ++++   +PSG+LRI    D  +  +      F+  +P +Q++
Sbjct: 74  LFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVE 133

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLS 182
           ++ D++  D+     D A+R+  P + S L   KL      A A P YL      R+P  
Sbjct: 134 MLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPEYLAGLPPLRQPCD 192

Query: 183 IQ--ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
           ++  E   H  ++           +NW  T +R      +     L  N+ L++ +  + 
Sbjct: 193 LERCEWIGHTRLS---------TPWNW--TFERQRERATVQTRGRLLANNTLAVYRLVLD 241

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+G+++LP ++V        LV ++ D   P   +Y  YP A     +++AF
Sbjct: 242 GAGVSVLPSFLVARELARGRLVHLLPDWRLPQGGIYALYPSARYMPVRVRAF 293


>gi|26991352|ref|NP_746777.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24986415|gb|AAN70241.1|AE016663_9 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 316

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 10  ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +    
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQGYLDSHAPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L KH  I++ D +    E   +LA +         S   +  Y + +Q    G G
Sbjct: 189 RQVTDLAKHPFISYVDDLAFSSE-LLYLANLIPNASAHLRSTSVIAQYTAALQ----GRG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +P LV ++ + I  +   +    E L+   ++    ++I
Sbjct: 244 LAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 293


>gi|127514033|ref|YP_001095230.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126639328|gb|ABO24971.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 293

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 1/182 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA S  F+ AA QL LS S +SRQ++ LE  +G  LF R  R ++LT+ G   +R  
Sbjct: 10  FIAVAESNGFSAAARQLGLSTSHVSRQVARLEVRLGCALFARTTRSVSLTQAGQGYYRQC 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   L     E+ +  ++ SG LR++      +  +   L +F   +P + I++  ++
Sbjct: 70  QNLLVGLRQANEEVTQQQLQLSGTLRVSAAGAFAEQYIAPVLIDFARQHPALTIEMDFNS 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + ++   +  D AIR    ++ S L+ RKL    M A A+P YL     P + Q+L  H+
Sbjct: 130 RMVNFVEEGIDFAIRF-GALKDSGLVARKLANRDMMAVASPQYLAEFGIPKTPQDLRLHS 188

Query: 191 LI 192
            I
Sbjct: 189 CI 190


>gi|116052199|ref|YP_788957.1| LysR family transcription regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587420|gb|ABJ13435.1| possible LysR family transcription regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 309

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 134/288 (46%), Gaps = 10/288 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA +GSF+ AAE+LHL+ S++S+ I+ LE  +G++LF R  R L LT+ G+  +R 
Sbjct: 12  VFVCVAEAGSFSAAAERLHLTASAVSKAIARLEDRLGLRLFERTTRRLALTDAGTTFYRT 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S V   LE +++ L     +  G++R+      G+  +   + +F   +  +   +   
Sbjct: 72  CSRVLGDLEESELALHAEHHQTGGRIRLDLPASYGRLHVLPVVLDFARRHALLVPHISFS 131

Query: 130 NKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +  ID      D  +R+  P I   +L  R L    +   AAP YL    EP  ++EL  
Sbjct: 132 DDFIDPVSQGIDILVRIGGPDIWPETLGHRYLGAQRLVFCAAPAYLAAHGEPRDVEELAA 191

Query: 189 HNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           H+ + +G    L        +    ++R +   RI+   +     ++Q  +   GI  LP
Sbjct: 192 HDCVLYGQGDGLTTPWNFPGHQPGELERRVMPTRIA---IGDGEGVVQALLASHGIGQLP 248

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++V    ++  L  ++  + +   ++   + +  +N  K+ A  + +
Sbjct: 249 TWLVSRHLESGRLREVLPQLASDGLSINLAWQKRRENLPKVGALLDVL 296


>gi|330989338|gb|EGH87441.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 294

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 4   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 63

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +  +L  YP   + L++
Sbjct: 64  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSVDLLI 123

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P S QEL  
Sbjct: 124 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGHCDSVVCASPAYLAMHGTPSSPQELAA 182

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K + +F        P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 183 HNCLTY-SYFGKSLWEFT---RQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 238

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  L+ ++ D    +  ++  Y      +  L+   +F+
Sbjct: 239 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 283


>gi|323499170|ref|ZP_08104148.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315803|gb|EGA68836.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 299

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 128/288 (44%), Gaps = 18/288 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVEMGSFSKVAEINNLTNSVVSKRIARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V          +       SG ++++     G  +L   + EF   +P + + 
Sbjct: 64  LTHGAKNVKQATLEAMDAVSGFGENISGHIKMSVPTISGDLILADAVAEFCNTHPGLSVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNAKPVKPED 182

Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L +HN + +        E      + N++  V              ++  ++ +  + G 
Sbjct: 183 LTQHNCLQYAYQTTGASEWEFKGKEGNYIVRVS--------GSFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           GIA +P  +V     N  LV +  +++     +Y  YP   +   K+K
Sbjct: 235 GIAYVPRCLVYHDIRNGQLVDLFPELVGKRLGIYAVYPFTRQPPNKVK 282


>gi|209694777|ref|YP_002262705.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
 gi|208008728|emb|CAQ78918.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
          Length = 311

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 139/294 (47%), Gaps = 19/294 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +FY +A++GSFT AA+Q+ +S S +S+Q+  LE E+ +KL  R  R LTLT+ G + 
Sbjct: 7   QMVIFYALAKAGSFTAAAKQMGVSTSHVSKQLGILEAELNVKLVQRTTRSLTLTDAGQQF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++Y  +      +     + +G LR+  +   G   +   + +    YPD+Q+++
Sbjct: 67  YLYCEKMYSAMTEASAIMDNERDEVAGILRLGLSQSFGTMHIIPAIDKLRHQYPDLQVEV 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+  D  D  +   + +    + QR L   H    A+P YL +   P   Q+L
Sbjct: 127 RLFDHRADMLKDGLDLWVTNFEDLPEGYVAQR-LADSHFVLAASPDYLIDKAVPHHPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSG 240
            +HN +T+     +  +  NW    D   G   + C++V+         ++    + G G
Sbjct: 186 TEHNCLTYQS---RHRDYSNW----DFSKGNEAL-CVKVSGNYCVDLAEAVRDAAISGWG 237

Query: 241 IALLPDYIVKDNPN---LVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A L  Y++ +  N   L++++ D   +    +Y  YP       K+ A  +F+
Sbjct: 238 VAYLASYLLTNEFNDGKLIQLLPDWKASQKMPIYAVYPSRKHLPRKISAVIDFL 291


>gi|146339421|ref|YP_001204469.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146192227|emb|CAL76232.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 321

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 132/290 (45%), Gaps = 16/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA++L LS +  S+ +  LE  +  +L  R +R + LTE G    
Sbjct: 9   IRVFCQVAELKSFAAAADRLSLSPAMASKHVMQLEQRLSTRLLNRTSRRVGLTEAGQVYF 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+  +  + +++V P G L+++  +     L  G L  +   +PD+ + L 
Sbjct: 69  DQVRPMLDQLDEAEAVVSKATVIPRGTLKVSAPVWFANPLFAGMLAAYHARHPDVVLDLD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +++  +  D A+R+        LI R L  + M   A+P YL     P ++ +LD
Sbjct: 129 LSGRLVNLVEEGFDLALRVSA-TPGDGLIARPLPPVLMQLVASPAYLAAAGRPATLADLD 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVLGSGIAL 243
            H  + +     + +        V    GE  +    V    N  L + Q  V G G+A+
Sbjct: 188 GHGFLKYAHYPVRTI-------MVPHADGEVALGFRDVLISGNETL-LHQAAVAGLGMAV 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +++ D+     L  ++ +++T    +   YP     + K++ F +FI
Sbjct: 240 LPRWLMADDLAAGRLEAVLPELLTIKAPLLAVYPSRKYLSAKVRTFIDFI 289


>gi|146307034|ref|YP_001187499.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575235|gb|ABP84767.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 290

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 120/269 (44%), Gaps = 13/269 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V ++ SF  AAE L +  S++SR+I+ LE  +G++L  R  R + LTE G  
Sbjct: 5   NDMALFVEVIKANSFRGAAEALGIPNSTVSRRIAELERRIGLRLLNRTTRRIELTEGGRL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      E+ E    PSG +R++   D G   L   L EF   YP I+  
Sbjct: 65  YFERCRRIVDEARLAHEEISELVDNPSGLIRLSMPTDFGVVYLAPLLAEFAERYPQIRFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  K +D+  +  D  IR+   +  S LI R L T+    +A+P YL     P S   
Sbjct: 125 LDLTPKRLDLIREPVDLVIRI-GTLPDSQLIARPLGTLRRSLFASPAYLARYGMPASPAA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  +         M D  W L    + I         +N+   + +  +LG G+A+L
Sbjct: 184 LLQHQCLR--------MLDAPWVLHDTQQKISLAVQGRFLLNNIGMLRRLALLGQGVAML 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVY 270
            D ++ ++     L R++ D       VY
Sbjct: 236 VDEMIGEDLAQGRLHRVLPDWKAEDLPVY 264


>gi|330974141|gb|EGH74207.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 304

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E+  G +L +R  R L LT  G     
Sbjct: 16  RVFIAINDRGSLIAAAEALDMSRAMVTRYLAQMESWAGARLLHRTTRKLGLTAPGQVTLL 75

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +  +L  YP     L++
Sbjct: 76  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSADLLI 135

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        AAP YL     P   QEL  
Sbjct: 136 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGQCASVVCAAPAYLAVHGTPSRPQELSA 194

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K + +F        P+  P    L  N  + +++  V G+GI+L P + 
Sbjct: 195 HNCLTY-SYFGKSLWEFT---RQQMPLSVPVGGNLSANDSVVLLEAAVAGAGISLQPVHS 250

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  L+ +M +    +  ++  Y      +  L+ F +F+
Sbjct: 251 AAPLIASGKLIALMPEYQPRALGIHAIYTSRHHQSATLRTFLDFL 295


>gi|157371417|ref|YP_001479406.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323181|gb|ABV42278.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 307

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 132/296 (44%), Gaps = 11/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  ++     F  VAR  SF  A ++L LS S++S  I  LE  + ++LF R  R + LT
Sbjct: 1   MQPNFSDFASFIAVARYKSFREAGDELGLSPSAMSHSIKQLEQRLKVRLFNRTTRSVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      V+ +  T   E+      P G L+I T+    +  L   +  F   YP
Sbjct: 61  EAGLTLFERLRPVFDEFNTILDEMNCFRDAPMGTLKINTSRLASRLFLLPIIAGFSRKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++++  D+K +DI     D  IRL   ++   +       I +   A P YLK+   P
Sbjct: 121 DIKVEITTDDKLVDIVRQEFDAGIRLNNRVEKDMITVPIGPKIKLVVVATPEYLKHHPAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
               EL  H  + F     +      +L   + P G+  ++    + ++   S ++  + 
Sbjct: 181 THPCELIHHQSVIF-----RFQSGRPYLWEFENPSGKLEVAPVGNIMLDDMDSALEAVLC 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+G+  L    VK+   +  L ++++D +    ++   YP     +G L+AF +++
Sbjct: 236 GAGLGYLYYEQVKEHLQSGKLAKVLDDWLPERPSLQLYYPNRQYMSGPLRAFIDYM 291


>gi|187479575|ref|YP_787600.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115424162|emb|CAJ50715.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 296

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 137/304 (45%), Gaps = 29/304 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  +G+KL  R  R + LT
Sbjct: 1   MDIPLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERNIGMKLLNRSTRRIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +  +      +LQ+ +  P G+L+I+    L Q  L   ++ F   YP
Sbjct: 61  EAGMVYFERCRHIVEEARVAHEQLQDMAAHPKGRLKISMPTSLAQLFLPVVIRNFRDQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI+    L  + ID   +  D  +R   +P   SSLI +++V +    YA+  YL    E
Sbjct: 121 DIECDFDLSLRPIDPISNPFDLVLRFGAQP--DSSLIAKQIVLMAQQLYASRAYLAQYGE 178

Query: 180 PLSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           P    +L  H  +  T G+     M     L + D      ++  +QVN  L+     +L
Sbjct: 179 PRVPSDLGHHECLRTTLGEPASYWM-----LHSGD------KVERVQVNGRLAANNLGML 227

Query: 238 GS----GIALLPDYIVK------DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAF 286
           G     G+ + P  +            LVR++ +  +TP     F    + +   K +AF
Sbjct: 228 GRMAAHGMGITPLLVFDAMEQAVSESGLVRVLPEWSLTP--VPLFALLPSRRIPAKTRAF 285

Query: 287 RNFI 290
            +FI
Sbjct: 286 LDFI 289


>gi|15964529|ref|NP_384882.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307308477|ref|ZP_07588181.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307319040|ref|ZP_07598471.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15073706|emb|CAC45348.1| Probable transcription regulator [Sinorhizobium meliloti 1021]
 gi|306895454|gb|EFN26209.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306901080|gb|EFN31688.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 298

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  +GS + A   L  S + IS++I  LE  +G +L  R  R ++LTE G   +
Sbjct: 7   LEIFARVVSTGSMSAAGRALGFSAAVISKRIKRLEDRLGARLLQRTTRQISLTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +      S +  G LRI+     G+  +  +L  F+  +PD+++ ++
Sbjct: 67  DRVLGILAGLEEAEAYASGRSSQVQGTLRISAPTSFGRMHIAPHLTGFMKDHPDLKLHIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   DI  +  D AIR+ + +  SSL+ RKL  +     AAP Y+     P  I EL 
Sbjct: 127 LTDDFTDIVAEGFDLAIRIGE-LSDSSLVARKLAPVRRLLCAAPSYVARHGAPTEIGELA 185

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           KH        +P    D NW L   D  +       L  NS   I +  + G+GIAL
Sbjct: 186 KHI------CLPAHNND-NWKLEGPDGSLSYRPEGPLVTNSSEIIREAVIAGAGIAL 235


>gi|221196142|ref|ZP_03569189.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
 gi|221202816|ref|ZP_03575835.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221176750|gb|EEE09178.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221182696|gb|EEE15096.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
          Length = 303

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 132/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT +G+  +
Sbjct: 7   MRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTAEGTTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +   +E+   P G +R+        + +   L +F   YPD+++ + 
Sbjct: 67  ERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHRVIPALPDFHARYPDLRVVVS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+  Y      P +  EL 
Sbjct: 127 TTDRFVDLVADGIDCAVRVGM-LSDTSLVARRIGEMAQLNCASRDYAARHGLPRTPDELP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  +  G    +   + +W  T D   G+       S + VNS  + +  CV G G+  
Sbjct: 186 DH--VAVGYFSSRTGRELDWEYT-DMDTGDVHTVKMRSIVSVNSSQAYLACCVAGLGMIQ 242

Query: 244 LP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P    + ++ D   LV ++ +   P   V   +P       +++ F +++
Sbjct: 243 APRDGLEPLLADG-TLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWL 292


>gi|241203794|ref|YP_002974890.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857684|gb|ACS55351.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 299

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 130/294 (44%), Gaps = 9/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + V   V   GS + A+  L    +++SR++S LE  +  +L  R  R +TLTE G  
Sbjct: 5   DAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRKVTLTEAGRS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+ +++E  +         P G+L +   I  G+  +   + +FL  YPDI ++
Sbjct: 65  YVEAAREILNRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPDINLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YL     P    +
Sbjct: 125 LMLGDRLSNLVEDHIDVALRIGN-LPDSNLIATRLGAIRRTVYASPDYLTRHALPRHPGD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ +TF  +        +W     R  +  P  S L VN+  + +   V G GI  +
Sbjct: 184 LAGHDCVTFEGM----ASMLSWTFIEGRHDLTVPIRSRLAVNTAEAAVDAAVAGLGITRV 239

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y          LV ++ D   P   V+  YP       KL+A  +F   + R
Sbjct: 240 LSYQAARAEMAGLLVPLLADFEPPPAPVHLVYPAQGLVPLKLRALLDFATPRLR 293


>gi|254254929|ref|ZP_04948246.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124899574|gb|EAY71417.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 297

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 128/296 (43%), Gaps = 23/296 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+ 
Sbjct: 12  NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S+V   L     +  +  VK    L I+TT       L   L +F   +PD  ++
Sbjct: 72  YF---SDVQRALLAIA-DATDRLVKRRAALTISTTPSFASKWLIPRLAQFTDAHPDYDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D +      D  D AIR  KP     L+   L  + + A  +P  L     P ++  
Sbjct: 128 VIADPQLATFRHDGVDLAIRYGKPPFGKHLVAHPLFPLDVCAVCSPALLAAPASPRALAG 187

Query: 186 L----DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L    D H      DL P       ++A +  P+       L+ N     +   V G GI
Sbjct: 188 LVLLHDAH------DLWPA------FVAALPEPVDVDPHKGLRFNQTSLAIDAAVAGQGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  D +V+ +     L +  E     S   Y  YP   ++   + A R++I  +A
Sbjct: 236 ALATDPLVERDIAAGRLCKPFEFAFPLSVGFYLVYPAERRDDDAIAAMRDWIVREA 291


>gi|327478897|gb|AEA82207.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 326

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 16/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F  +  +GS + AA QL  +Q ++SR++  LE  +G++L  R    + LT  G +
Sbjct: 13  DLLRTFIRIVDAGSLSAAATQLGTTQPTVSRRLQALERSLGLQLLNRSTHRMQLTGDGER 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +V       + EL  +   P G LR+      GQN L   L ++L  YP++ ++
Sbjct: 73  CYGFARQVLESWGEMEAELLGARDDPRGTLRVQVPHAFGQNQLVAPLGKYLSRYPNVSVE 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L ++  + + +  DCAI++   I+  S++  +L  +       P  L     P + ++
Sbjct: 133 WVLHDRSPNFTAEGIDCAIQVGA-IEDPSVVAIRLGEVPRIVVTHPALLGEGPLPTTTEQ 191

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +   +        +++  C  D        R   +PR+S    +S  ++    + G G
Sbjct: 192 LQRLPWLALRTYYTDEVVLTCQAD----GRSHRFAIQPRMS---TDSLYALRSAALAGLG 244

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +   ++V    +   LV+++         VY  YP A     KL+ F   I
Sbjct: 245 ACVSSAWVVAQDIEEGRLVQLVPQWRAAPLPVYLIYPHARSYPAKLRLFAEII 297


>gi|198284575|ref|YP_002220896.1| LysR family transcriptional regulator [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665299|ref|YP_002427245.1| transcriptional regulator, LysR family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198249096|gb|ACH84689.1| transcriptional regulator, LysR family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517512|gb|ACK78098.1| transcriptional regulator, LysR family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 307

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 134/283 (47%), Gaps = 8/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F   A++G+F+ A  +L  S + +S+++  LE ++ ++LF R  R + LT++G++ +
Sbjct: 9   LTIFVHAAKAGNFSTAGRELGFSAAVVSKRLQRLEDQLSVRLFNRSTRKVGLTDEGAEYY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   LE  +  +   S +P G LR+      G+  +   +  FL  +PD+ + L 
Sbjct: 69  DYCIRVLSDLEEAESLITVGSRQPKGTLRVTVPAAFGRLHIAPLVPVFLRRHPDLHLCLH 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI  +  D A+R+ + ++ S+L+ R L        A P Y+     P    +L 
Sbjct: 129 LSDNVVDIIEERYDVAVRIGE-MKDSNLVARNLCVDKRLVVATPSYIAKYGAPEQPDDLI 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           KHN + F       +  F+        +   R+S   + N+  ++ +  +   GIAL P 
Sbjct: 188 KHNALLFAHSTTSNLWRFSDKFGKQHSV---RVSGNFETNNCDALREAILADIGIALRPT 244

Query: 247 Y-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + I +D  +  ++ ++ D +  SF V   YP       K++ F
Sbjct: 245 WDIWRDILSGRMIALLRDYVPYSFDVKVVYPSRRHLPSKVRVF 287


>gi|167584369|ref|ZP_02376757.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 290

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 15/287 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR  SFT AAEQL ++Q ++SRQI  LE   G  LF RHA+GLTLT +G +L 
Sbjct: 10  LQIFSTVARHRSFTRAAEQLCITQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V +E + ++E   ++L       +  L++ T +      +   +  F   +PD+ +Q+ 
Sbjct: 70  PVVNESFARIEDISMKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124

Query: 128 LD-NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQE 185
                D+D + +  D AI +      + +    L    +    AP   +    PL+ I +
Sbjct: 125 TAWQHDVDFATEPFDAAI-VYGTSPGADVCALPLFDERLTPVCAPGLRQTA--PLAEIGD 181

Query: 186 LDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H L+  T      +   D   + TVD   G P    L + +  ++  + V    + L
Sbjct: 182 LARHTLLHPTRDHRDWRAWLDHAGVRTVDADRG-PSFDTLDLATNAAMEGFGVAIGDVTL 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + D +      L R  + V+      +F YPE+  +  K++AF ++I
Sbjct: 241 VDDDVSAR--RLERPFDVVLETGARYFFVYPESAGSQQKIRAFSDWI 285


>gi|163742283|ref|ZP_02149671.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384613|gb|EDQ08994.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 324

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 3/208 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRVSPAVTSARISQLEEYLGVRLFQRTTRNLTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++  + ++   +  P G L +A  + LG+ LL     EFL  YP
Sbjct: 60  EQGRAFYDGAVAVLDAVDVAEAKVMHLTDTPRGTLFVAAPLGLGRRLLAPQTPEFLATYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L L ++ +D++ +  D A  L +P + S+L  RK+        AAP Y+     P
Sbjct: 120 EINLRLRLSDRAVDLTSEGLDLAFFLGQP-EDSNLRIRKIADCQRVLCAAPDYVARRGMP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL 208
                L + +        P   E F WL
Sbjct: 179 EDGAALLREDHDCLNLRYPGASE-FQWL 205


>gi|84683452|ref|ZP_01011355.1| transcriptional regulator, LysR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668195|gb|EAQ14662.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 288

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD LR  + V R G+ + AA+ L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   DWDGLRTAFEVVRHGTVSGAAQALGVHHATVIRHIDALEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L        G+L + T     + L+   L EF   +P + 
Sbjct: 63  EDLARVAQATDDQFAQLSARLSGQGSAVQGELVVTTLASFTRRLMP-VLAEFQAQHPSVT 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +      +   +    A  AIR   P +    + ++L T+    YAAP Y++    P   
Sbjct: 122 LVYRTGPRIFRLEYGEAHVAIRAGSPPKELDNVVQELATLKTALYAAPSYVERRGMPTEA 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ +   D   +      W++     I   R+    ++  LS+ +    G G+  
Sbjct: 182 -DLVTHDFVGADDEQTRA-PGLRWMSA---NIPRDRVVFRAIDD-LSLYEALRAGVGLGF 235

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            P  + +  P+LV+++      S  ++      L  T K++A    +    +D
Sbjct: 236 SP--VAEAGPDLVQVLPPRDEWSAKLWLVTHVDLHRTAKVQALTQHLKASLKD 286


>gi|325277608|ref|ZP_08143191.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097260|gb|EGB95523.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 301

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 132/286 (46%), Gaps = 16/286 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F     +  F+ AA +L ++ SS++R +  LE+ +G  L  R  R ++LTE G++ +
Sbjct: 7   MKMFVATVDAQGFSAAARRLGVAASSVTRLVDALESALGATLLNRSTRQVSLTEAGARYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    ++  L+     + +   +P G LR+   ++ G+ ++  +L  FL  +P +++ + 
Sbjct: 67  QRARGIFEALDEADASISDRGEEPVGVLRLCLPVEFGRRVIAPHLGPFLARHPALELDID 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D+     D +IRL  P  S  ++ R L        A+P YL      L  ++L 
Sbjct: 127 LSDRIDDLLDGRYDLSIRLGDPAPSDEMVCRPLGRFQRWLVASPGYLAERGPLLHPRQLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246
           +H  + F        +   W  T  +   E  +S    ++   +++   L GSGIALL D
Sbjct: 187 EHPCLRF----RYGQKARPWRLTCGQESLELDVSGPLRSANADMLRETALAGSGIALLAD 242

Query: 247 YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++V+++    R+              +PE   N G      N ++L
Sbjct: 243 WLVREDVEGGRLQR-----------LFPEWQANPGTANDCINALYL 277


>gi|239501130|ref|ZP_04660440.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB900]
          Length = 298

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 103/193 (53%), Gaps = 11/193 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  + F VV   GSF+ AA +L ++Q ++  +I  LE ++G  LF R   GL  TE   
Sbjct: 7   WDDQKFFLVVFEEGSFSAAARKLGVTQPTVRTRIEHLEHQLGTVLFSRSVHGLKPTE--- 63

Query: 65  KLHRVTSEVYHK-LETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             H +  EV  + ++        ++  P    +G +R++ +  LG  +L   L +F LLY
Sbjct: 64  --HALALEVPARAMQRASDYFMRTASAPLNVIAGSVRVSVSDFLGTMVLPQLLSKFRLLY 121

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ I+L L+N   ++    AD AIR+  P+Q  +L+ +K+  + +  YA   Y++    
Sbjct: 122 PEVNIELSLNNSSANLLEQEADLAIRMYPPVQ-EALVAKKIGEVPLGLYAHRDYIQRKGN 180

Query: 180 PLSIQELDKHNLI 192
           P  +++L +H+LI
Sbjct: 181 PTCLEDLRQHDLI 193


>gi|121592772|ref|YP_984668.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120604852|gb|ABM40592.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 312

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 126/289 (43%), Gaps = 28/289 (9%)

Query: 6   DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+ F     VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R ++LT +
Sbjct: 2   DKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLLVRTTRRISLTHE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS        +   +   +  +    VK +G LR+      G+  +   +  F  L+P++
Sbjct: 62  GSAFLEDCQRLLSDVANAEASVSAGGVKATGHLRVTAPAGFGRRHVAPLVPRFHDLHPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P  
Sbjct: 122 TLSLNLSDRVVDLAGEGYDCAVRVGD-LPDSSLVSVRMADNRRLCVATPQYLQRRGTPTH 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-------------RPIGEPRISCLQVNSYL 229
             EL +H+ +T   L     +   W   V              +P G    S  QV    
Sbjct: 181 PGELAQHDCLT---LSSDASQTRGWAFRVPVAGGGGATEVVHFKPGGPLDCSDGQV---- 233

Query: 230 SIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
            +  +C+ G GIA    + V+       LV ++E+   P   +Y  +P+
Sbjct: 234 -LHDWCLGGWGIAWRSTWEVESEIAAGRLVAVLEEFAAPPNGIYVVFPQ 281


>gi|22124100|ref|NP_667523.1| putative DNA-binding transcriptional regulator [Yersinia pestis KIM
           10]
 gi|108809687|ref|YP_653603.1| putative DNA-binding transcriptional regulator [Yersinia pestis
           Antiqua]
 gi|108813649|ref|YP_649416.1| putative DNA-binding transcriptional regulator [Yersinia pestis
           Nepal516]
 gi|145597606|ref|YP_001161682.1| putative DNA-binding transcriptional regulator [Yersinia pestis
           Pestoides F]
 gi|153997380|ref|ZP_02022480.1| transcriptional regulator, LysR family [Yersinia pestis CA88-4125]
 gi|162419064|ref|YP_001605721.1| putative DNA-binding transcriptional regulator [Yersinia pestis
           Angola]
 gi|165928291|ref|ZP_02224123.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165937571|ref|ZP_02226134.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166011359|ref|ZP_02232257.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212210|ref|ZP_02238245.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400511|ref|ZP_02306020.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420766|ref|ZP_02312519.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167426753|ref|ZP_02318506.1| transcriptional activator AaeR [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167466813|ref|ZP_02331517.1| transcriptional activator AaeR [Yersinia pestis FV-1]
 gi|218930692|ref|YP_002348567.1| putative DNA-binding transcriptional regulator [Yersinia pestis
           CO92]
 gi|229836833|ref|ZP_04456998.1| transcriptional regulator, LysR family [Yersinia pestis Pestoides
           A]
 gi|229839268|ref|ZP_04459427.1| transcriptional regulator, LysR family [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229899831|ref|ZP_04514972.1| transcriptional regulator, LysR family [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904143|ref|ZP_04519254.1| transcriptional regulator, LysR family [Yersinia pestis Nepal516]
 gi|270488577|ref|ZP_06205651.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294505276|ref|YP_003569338.1| probable lysR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|21956850|gb|AAM83774.1|AE013617_10 putative transcriptional regulator LYSR-type [Yersinia pestis KIM
           10]
 gi|108777297|gb|ABG19816.1| lysR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|108781600|gb|ABG15658.1| lysR-family transcriptional regulatory protein [Yersinia pestis
           Antiqua]
 gi|115349303|emb|CAL22271.1| probable lysR-family transcriptional regulatory protein [Yersinia
           pestis CO92]
 gi|145209302|gb|ABP38709.1| lysR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149289017|gb|EDM39097.1| transcriptional regulator, LysR family [Yersinia pestis CA88-4125]
 gi|162351879|gb|ABX85827.1| transcriptional activator AaeR [Yersinia pestis Angola]
 gi|165914676|gb|EDR33290.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165919679|gb|EDR37012.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165989743|gb|EDR42044.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206956|gb|EDR51436.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961572|gb|EDR57593.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167049879|gb|EDR61287.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054280|gb|EDR64101.1| transcriptional activator AaeR [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229678261|gb|EEO74366.1| transcriptional regulator, LysR family [Yersinia pestis Nepal516]
 gi|229687323|gb|EEO79398.1| transcriptional regulator, LysR family [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695634|gb|EEO85681.1| transcriptional regulator, LysR family [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705776|gb|EEO91785.1| transcriptional regulator, LysR family [Yersinia pestis Pestoides
           A]
 gi|262363339|gb|ACY60060.1| probable lysR-family transcriptional regulatory protein [Yersinia
           pestis D106004]
 gi|262367283|gb|ACY63840.1| probable lysR-family transcriptional regulatory protein [Yersinia
           pestis D182038]
 gi|270337081|gb|EFA47858.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294355735|gb|ADE66076.1| probable lysR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|320017149|gb|ADW00721.1| transcriptional regulator, LysR family [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 303

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA +L  S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   QMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     + L  YP + + L
Sbjct: 66  YQGCRRMLQEVQQVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKAYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q+S L  R+L  + M   AA  YL     P      
Sbjct: 126 VAGIPAPDLIADGLDVVIRV-GALQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPAK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233
                       P  M +F+WL    RP     +  P     Q+        N   ++++
Sbjct: 181 ------------PSDMANFSWLEYNVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKAGAGIAYTP 240


>gi|187918980|ref|YP_001888011.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717418|gb|ACD18641.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 316

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 123/264 (46%), Gaps = 27/264 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   +  F +V RSGS T A     +S++++SRQ+  LE E+G+ LF R ARG++ T
Sbjct: 1   MQLDMRLVMAFSLVMRSGSLTQAEAISGVSKATLSRQLQVLEEELGVTLFNRRARGMSPT 60

Query: 61  EQGSKLH----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           E     H    ++ ++V  +LE  + +LQE      G+L I    +          K F+
Sbjct: 61  EAARAFHTHCEQILADVSGRLEVAREQLQELGSGIGGELSIKADSEFSTTFAAHVTKLFM 120

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCA--------IRLRKPIQSSSLIQRKLVTIHMHAY 168
             +P++++ L       D++ DY  CA        I    P     L+ + L  I    Y
Sbjct: 121 ARHPNVKLNL-------DVA-DYPGCAKAEEIDGYICAELP-DIPDLVGKLLGQISCGLY 171

Query: 169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--N 226
           A+P YLK    P++  +L  H+ I    +I     + + L    +   +P +    V  N
Sbjct: 172 ASPAYLKQKGTPVTPMDLTCHDSI----VIRSTSGNKDTLMLYSQGGSQPYLPKANVTTN 227

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK 250
            +  +  +C+ G GIALLPD+ V+
Sbjct: 228 DHWIMKTFCIDGFGIALLPDFFVQ 251


>gi|170722380|ref|YP_001750068.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169760383|gb|ACA73699.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 298

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 142/296 (47%), Gaps = 22/296 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +++F  V   GS+T AAE L++ + ++S+ I  LE E+G++L +R  R +  T  G +
Sbjct: 5   EAMQMFVAVVEHGSYTKAAEALNVHRPALSKLIQNLEHELGVQLLHRTTRRVNTTPAGDE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  + ++  +L  T ++    +  P GKLRI     LGQ ++   L E +  YP ++I 
Sbjct: 65  FYERSLKLLAELADT-LDWFSPARPPRGKLRIDMQTVLGQAVIIPRLPELMDRYPGLEIS 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   D+     DC++RL   +  SSL+ +++  + +   AAP Y++    P ++ +
Sbjct: 124 LATSDNLNDLIAQGIDCSVRLGD-LDDSSLVAKRIGEVALVTCAAPAYVQKYGLPGTLDD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI----MQYCVLGSGI 241
           L  H  + F  ++ +  +   W     R  G  ++  +++ S + +       C   +GI
Sbjct: 183 LQAHLAVNF--MVEQRRQIMPW-----RFRGNGKMISVKMRSAIVVDNAGALLCCALAGI 235

Query: 242 AL-------LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +       L  YI  D+  LV ++ DV     TV   +P+    +  ++ F  ++
Sbjct: 236 GMVQGLRPALQRYI--DSGRLVEVLPDVPVEPKTVSVLFPDRRHLSPNVRVFVEWV 289


>gi|86750879|ref|YP_487375.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573907|gb|ABD08464.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 301

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 132/298 (44%), Gaps = 15/298 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + V   V  +GS +  A +LH   ++ISR++  LE  +G++L  R +RGLTLTE+G 
Sbjct: 4   FEAMSVLLAVVDAGSLSAGARRLHAPLATISRKVGELEKHLGVRLVRRTSRGLTLTEEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  +  +LET + +         G L +   +  G+  L     +FL   P+I +
Sbjct: 64  AFVAASRRILEELETAERQAAGDYGALRGALHVTAPVAFGERHLLPIALDFLKQQPEINL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ + ++    D A+R+   +  S+LI  ++ T+     A+P YL     P    
Sbjct: 124 RLTLADQQVSLADAQIDVALRIGH-LADSALIGTRVGTVRRVLCASPDYLARRGVPRRPD 182

Query: 185 ELDKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +L  H+ I+F         +   D    A   RP        L VN+  + +Q  + G G
Sbjct: 183 DLAGHDGISFQGFATAPEWRYRRDSAAFAVDPRP-------KLAVNTTEAAIQSALAGVG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  +  Y V D      L  ++ D       V   +  A+    K+++F ++   + R
Sbjct: 236 IIRVLSYQVSDQLRAGQLRELLPDFAPEPLPVNLIHAPAVPLPPKVRSFLDWTAPRLR 293


>gi|15596509|ref|NP_250003.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100763|ref|ZP_01364681.1| hypothetical protein PaerPA_01001791 [Pseudomonas aeruginosa PACS2]
 gi|218892584|ref|YP_002441453.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234434|ref|ZP_04927757.1| hypothetical protein PACG_00283 [Pseudomonas aeruginosa C3719]
 gi|254239685|ref|ZP_04933007.1| hypothetical protein PA2G_00306 [Pseudomonas aeruginosa 2192]
 gi|9947249|gb|AAG04701.1|AE004560_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126166365|gb|EAZ51876.1| hypothetical protein PACG_00283 [Pseudomonas aeruginosa C3719]
 gi|126193063|gb|EAZ57126.1| hypothetical protein PA2G_00306 [Pseudomonas aeruginosa 2192]
 gi|218772812|emb|CAW28597.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 303

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 14/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+   F  V   GS + AA+ L  +++ +S  +  LE E+G+ L  R  R + LT+ G +
Sbjct: 5   DRFETFRAVVDCGSLSAAADTLGQTRAVVSFNLKRLEAELGVSLLSRSTRRMALTDAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   +V  +      + +    +  G LR+ TT + G   L   L+ F  L+P +Q+Q
Sbjct: 65  FYQRCVKVLDEARLAIDDARAEHGELRGSLRVTTTQEYGLRQLVPALQAFARLHPALQVQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   D+  +  D AIRL + ++ S+    +L +  + A A+P  L    EP     
Sbjct: 125 LSTSSLHADLIGERFDVAIRLGR-LEDSTHHAVQLASFEVLAVASPACLAALGEPPPTDL 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVLGS 239
                L   G    +  +   W   V  P G       PR   L  ++  ++  + + G 
Sbjct: 184 ESLERLQNLGH--SRLADSLPW--QVRAPDGALRSYRGPRHPMLLADNAAALRAFALDGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+LPD++V+ +     L R++ D   P   V+  YP       K++AF +F+
Sbjct: 240 GIAVLPDWLVQADLRCGALQRLLADHGFPLQGVHAVYPPTRHLPSKVRAFIDFL 293


>gi|269960280|ref|ZP_06174654.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
 gi|269834891|gb|EEZ88976.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
          Length = 336

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 95/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G  
Sbjct: 32  NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 91

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ +YP++ I+
Sbjct: 92  FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDVYPNVSIK 151

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+     D AIR  +P  S+ ++            A+P Y+ N       ++
Sbjct: 152 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGANERILCASPEYVANNPVLTKPED 211

Query: 186 LDKHNLITF 194
           L++HN + +
Sbjct: 212 LNQHNCLCY 220


>gi|206562326|ref|YP_002233089.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038366|emb|CAR54323.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 309

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 123/272 (45%), Gaps = 9/272 (3%)

Query: 23  AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82
           AA QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     
Sbjct: 22  AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTD 81

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
           +++E    P+G+LRI        +     L  F   YP IQ+ +I++++ +D   +  D 
Sbjct: 82  QMRELRATPTGRLRIQMLPGFALDHFGKPLAAFNQRYPGIQLDIIVNDRVVDPVEEGFDI 141

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202
           A ++  PI S SLI+R+L T+     AAP Y+     P   ++L +H    +     +  
Sbjct: 142 AFQIFPPI-SESLIERRLFTVRRLFCAAPAYVDAHGAPQHPRDLLQHTTALYSGYPSRN- 199

Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258
               W  T    + E  +   ++ NS   + +Y + G G+  LP  +  D      LV I
Sbjct: 200 ---RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPI 256

Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + D      +    YP   +   K+KA   F+
Sbjct: 257 LTDYQLAPLSFAAVYPATQRQALKVKALVEFL 288


>gi|238763049|ref|ZP_04624016.1| transcriptional regulator [Yersinia kristensenii ATCC 33638]
 gi|238698807|gb|EEP91557.1| transcriptional regulator [Yersinia kristensenii ATCC 33638]
          Length = 310

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 12/297 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GSF+  A QL +S S+ISR +S LE  +  +L  R  R L L+E G ++
Sbjct: 12  EMAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGEEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  + +     +      + + +P G +RI+    +G+ ++  ++ EFL  Y  I ++L
Sbjct: 72  FKRCNAMLCAANSVMEVSGQYNQEPEGLIRISVPKAVGRFVIHPHIFEFLRRYSKIDVEL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  D  D AIR+      S +I R+L+ I     A P YL     PL   +L
Sbjct: 132 RLDDRYVDLIDDNVDLAIRITDQ-PPSGMIGRQLMNIEHLLCATPEYLAAHGVPLHPHDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALLP 245
            +H+ I  G+        F           + R +       L +++Q+  +GS    LP
Sbjct: 191 VQHSCIYLGETPGDARWKFRQGTKTVTVAAKGRYAANHTGVRLDAVLQHMGIGS----LP 246

Query: 246 DYIVKDNPN---LVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +  +       +V+++ D   + + S  ++  YP       KL+ F ++I  + RD
Sbjct: 247 YFTARTALQQGLVVQVLPDWRFISSYSGGLWLLYPPTRYLPPKLRVFIDYIVGRLRD 303


>gi|186471442|ref|YP_001862760.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197751|gb|ACC75714.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 308

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 129/288 (44%), Gaps = 13/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA+  SF  AA +L ++ S+IS+ I  LE  +G  LF R  R + LTE G +
Sbjct: 13  DGVEAFLTVAQHRSFRRAAAELGVTASAISQAIRVLEARIGAALFIRTTRSVGLTEAGER 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + +L       +    +P+G LR++    +   LL+  +  F   YP+++++
Sbjct: 73  FLSRAKPAFEELVAASEVARGLGQRPAGLLRLSVPRAVVPVLLEPLIASFCQAYPEVEVE 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    K IDI+ +  D  IRL + + +  +       +H+    +P Y      P    +
Sbjct: 133 IDATEKLIDIAAEGFDAGIRLGQFVAADMVAVALTPPLHLVVVGSPDYFATRGRPQHPDD 192

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L +H  + +    G L P    +      ++  +  P I+    N + +++   V G G+
Sbjct: 193 LRQHACLRWRRSGGALAPWSFNENG--EAIEIAVSGPFIA----NDFPTMLGAAVEGVGL 246

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A LP  I ++      L++++E        V+  YP+  +   KL+AF
Sbjct: 247 AQLPGPIAREALRAKKLLQVLEPFAPVVPGVFLYYPDRRQIMPKLRAF 294


>gi|297579783|ref|ZP_06941710.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535429|gb|EFH74263.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 200

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 1/194 (0%)

Query: 4   DW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE 
Sbjct: 2   DWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPDI
Sbjct: 62  GALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QLI         +       R  + + S S     L       YA+P YL     P +
Sbjct: 122 RVQLITTTPGQLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVPQT 181

Query: 183 IQELDKHNLITFGD 196
           +QEL +HN++ +G 
Sbjct: 182 LQELTEHNVLCWGS 195


>gi|317404306|gb|EFV84734.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 306

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 135/298 (45%), Gaps = 25/298 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ AAE L + +++++  I  +E  +G +L  R  R + LT  G 
Sbjct: 4   FQEMQVFVRIAERRSFSKAAEDLRIPRATVTNLIKRMEKRLGARLLERTTRQVRLTHDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   LE        ++  P G LR+     L +  +   L  FL  YPD+ +
Sbjct: 64  AYYRRCVRLLADLEEADGAFLNTA--PKGLLRVNMQGTLARVFVMPALPGFLERYPDLVL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  D++ +D+  +  DC +R    +Q SSL+ R++  +     A+P YL    EP ++ 
Sbjct: 122 HLGEDDRLVDLVREGVDCVLRA-GTLQDSSLVGRQIALMPQVTVASPAYLARYGEPATVD 180

Query: 185 ELDKHNLITF-----GDLIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           +L+ H  + +     G  +P    ++  N LA   RP      S + VN         + 
Sbjct: 181 DLEGHRAVDYVSSSTGRSVPLDFMVDGRNVLA---RP-----GSVVSVNGAELYASAALA 232

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPS-----FTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  +P Y V D+    R+   V+ P        V   YP+  + + +++ F  ++
Sbjct: 233 GLGLIQVPRYRVADDLAAGRL--KVVLPGAPPAPMPVSVLYPQNRQVSARVRVFSQWL 288


>gi|168232288|ref|ZP_02657346.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194472640|ref|ZP_03078624.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194459004|gb|EDX47843.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333397|gb|EDZ20161.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 321

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 126/259 (48%), Gaps = 10/259 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I +   I R+L T       +P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGVDIEIRVGDDI-NELYIARQLATNRRILCTSPEYLERHGKPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243
           L +H+ +    +I +    F NW+ T  +     R++     NS   ++ + + G GI L
Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255

Query: 244 LPDYIVK---DNPNLVRIM 259
             ++ V    +   LVR++
Sbjct: 256 RSEWDVAQYIERGELVRVL 274


>gi|303250394|ref|ZP_07336592.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252252|ref|ZP_07534149.1| hypothetical protein appser6_7700 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650720|gb|EFL80878.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860174|gb|EFM92190.1| hypothetical protein appser6_7700 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 298

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 139/288 (48%), Gaps = 10/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE G  
Sbjct: 5   NAINLFCRVIETQSFTQAAQLEQVSLAMASKLIAQLEEHLNVRLLHRTTRKITPTEAGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+IQ+ 
Sbjct: 65  YYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPNIQLN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P ++++
Sbjct: 125 IEFSDRRVDVVAEGYDLVLRI-GTLEDSSIVAKRIARSELVLIASPDYLAKQGTPENLEQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + + +      + + ++    +   +P    +  N Y +++Q    G GI  LP
Sbjct: 184 LTEHTCLIYEN-----HQQWQFMNGEQKVKIKPNAHVISNNGY-ALLQMTKAGQGIVNLP 237

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++VK+     NLV I+      S  +   YP     + K+K F  F+
Sbjct: 238 LFLVKEEISAGNLVEILPQYKQHSIDISVLYPHRRYLSPKVKVFIEFL 285


>gi|262276133|ref|ZP_06053942.1| transcriptional regulator LysR family [Grimontia hollisae CIP
           101886]
 gi|262219941|gb|EEY71257.1| transcriptional regulator LysR family [Grimontia hollisae CIP
           101886]
          Length = 299

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 123/273 (45%), Gaps = 8/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+ AAEQ +L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSKAAEQNNLTNSVVSKRVARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       +G ++++     G  LL   + EF    P + + 
Sbjct: 64  LLHGAKNVKQATQEAVNSVIGFGENITGHIKMSVPTISGDLLLADAVAEFCSQNPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+NK +D+     D  IR    ++ SSLI R  +       A+P YL    +P + + 
Sbjct: 124 MSLNNKFVDLIEGGYDLVIRTGY-LEDSSLIARHFLDSQWVVCASPEYLSRYGKPATPEA 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   W     +     R+S     ++  ++ +  + G GIA +
Sbjct: 183 LVDHNCLQYAYQTTGASE---WEFKASKGNYIVRVSGSFSTDNATALRKAALGGYGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           P  +V  +    NL+ I  + +     +Y  YP
Sbjct: 240 PRCLVYHDLLEGNLIDIFPEQVGKKLGIYAVYP 272


>gi|213156968|ref|YP_002319013.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|301346693|ref|ZP_07227434.1| transcriptional regulator, LysR family protein [Acinetobacter
           baumannii AB056]
 gi|301595406|ref|ZP_07240414.1| transcriptional regulator, LysR family protein [Acinetobacter
           baumannii AB059]
 gi|213056128|gb|ACJ41030.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
          Length = 306

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 140/299 (46%), Gaps = 33/299 (11%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +   GSF+ AA+QL++ +++ S  I  LE+ +  +L  R  R +  +  G 
Sbjct: 4   FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPDI++
Sbjct: 64  AFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHQLYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R  + +  S+LI R L+ +     A+P YL     P   +
Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLIDMPQVICASPDYLNKHGTPEQPE 182

Query: 185 ELDKHNLITFGD-----------LIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLS 230
           +L  H  + F             ++    +DF   +W+A  D             N  LS
Sbjct: 183 DLLSHYCVNFFSTSGGRNYPFELMVNGKKQDFFLKSWIAVNDAE-----------NYVLS 231

Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +Q    G+G+  +P Y V +   N  LV+++ +   P  +V   YP+  + + +++ F
Sbjct: 232 ALQ----GAGLIQVPRYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVF 286


>gi|167588085|ref|ZP_02380473.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 279

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 121/260 (46%), Gaps = 9/260 (3%)

Query: 41  LETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIAT 99
           LE  +  +LF R  R ++LT +G   +         L     +++E  S  PSG LRI +
Sbjct: 4   LEDRLDTRLFQRTTRSMSLTREGELFYENCRPGIDHLAQALDDMRELRSGPPSGHLRIGS 63

Query: 100 TIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK 159
           T   G+ ++   L++F L YPDI ++L+L+++ +D S D  D A R  + ++ S+++ R+
Sbjct: 64  TPGFGRKIIAPLLRDFHLQYPDITLELLLNDRPVDFSADRIDVAFRDGR-MEDSAIVARQ 122

Query: 160 LVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR 219
           L+ + M   AAP Y      P  + EL +H  I       +  E   W   VD    + +
Sbjct: 123 LIPMQMVVCAAPAYAHRYGLPRRVDELAQHRCINLRTASGRVKE---WEFKVDGLAQQAQ 179

Query: 220 ISCLQVNSYLSIMQYCVL-GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            +     + + ++   VL G GIA LP Y V D   +  LV  +          Y CY  
Sbjct: 180 PAAHHTFNDMDLVVRAVLDGLGIAQLPAYQVCDLLADGRLVSCLGQHAPDDGGHYLCYLS 239

Query: 276 ALKNTGKLKAFRNFIFLKAR 295
                 +++AF +++  + R
Sbjct: 240 RKHLPTRIRAFIDYMIEQTR 259


>gi|113867589|ref|YP_726078.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526365|emb|CAJ92710.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 315

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 136/293 (46%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ A+    + +S +SR+I+ LE ++G++L  R  R + +T  G
Sbjct: 3   DLNDLSLFAQVVEHGSFSAASRASGVPKSRLSRRIAQLERDLGVQLLRRTTRQVRVTPLG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     + ++ +  +  ++++  +P G LR++  I + Q LL   +  F+   P ++
Sbjct: 63  ESFYERCRAMLNEAKAAREVIEQAREQPGGTLRVSCPIAIAQILLAPAIGHFMRANPAVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   N+ +D+  +  D A+R+R+ ++ SSL  R      +   A+P  L +   P + 
Sbjct: 123 IELETTNRRVDVIGEGFDLALRVRESMEDSSLAVRTFGESQLMLVASPALLDSIGRPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSG 240
           Q LD   +   G         +      +  I    EPR   L    ++ + +  + G+G
Sbjct: 183 QALD--GMPGVGQPPHDGKHVWTLRCKTNDSIQIAYEPR---LVTEDFVLLREAAIAGAG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP    +D   +  L  ++     P  T++  +P     T   + F +F+
Sbjct: 238 VAMLPRMYCRDALESGELELVLPQYDMPVGTLHAVFPSRKGVTPATRRFLDFL 290


>gi|13471870|ref|NP_103437.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022614|dbj|BAB49223.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 297

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 19/290 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V    SFT AA  L L +S+ +  I  LE  +G +L  R  R +  T+ G  
Sbjct: 5   DTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQDGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    +  ++E  +   +  + +P G LRI  +  L +  L   L EFL  Y  I +Q
Sbjct: 65  YYRRCLPILAEIEDAEAAFR--NAEPFGLLRIDASTLLTRTFLLPRLPEFLARYSRIDLQ 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC IR+ +P   S +I R+L  I     A+P YL     P S   
Sbjct: 123 IGQSDRLVDLVREGVDCVIRVGEP-PDSGMIMRRLGMIREMTCASPAYLSRHGTPASPDA 181

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           LD H  + F     G+++P     F +  TV+    E R+   +  N+  +      LG 
Sbjct: 182 LDGHQAVGFVSSRTGEVLP-----FEF--TVNGKTREIRLPGRVAANNSDTAADLARLGL 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+   P Y  + +     LV ++ D       +   YP+  + + +L+ F
Sbjct: 235 GLIQAPRYRFEKDLAQGMLVEVLADYPPSPTPLSALYPQNRQLSPRLRVF 284


>gi|238787250|ref|ZP_04631049.1| Glycine cleavage system transcriptional activator [Yersinia
           frederiksenii ATCC 33641]
 gi|238724512|gb|EEQ16153.1| Glycine cleavage system transcriptional activator [Yersinia
           frederiksenii ATCC 33641]
          Length = 305

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 132/299 (44%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    + L   +L    +    AP  L           
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLL----------- 174

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238
           + +H L    DL    +       +WLA   R +G P+I+  Q    +    ++Q  V G
Sbjct: 175 MGEHGLKVPSDLAYHTLLHDTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHG 233

Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIAL+ + + +      R++    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 234 QGIALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|284008533|emb|CBA75066.1| glycine cleavage system transcriptional activator (LysR-family
           transcriptional regulator) [Arsenophonus nasoniae]
          Length = 307

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 133/306 (43%), Gaps = 24/306 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L+++Q++IS QI GLE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELYVTQAAISHQIKGLENFLGMKLFRRRNRSLLLTEEGLN 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  + +  G L ++         L   L  F   YPDI ++
Sbjct: 69  YYLDIKEIFSSLREATRKLQ--AFRAKGALTVSLLPSFAIQWLVPRLSSFNHAYPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-Q 184
           +   + + D   D  D AI          L   +L   ++    AP  L   R PL   Q
Sbjct: 127 IQAVDHEGDKMADDVDVAI-FYGYGNWPGLKTDRLYAEYLIPVCAPALLAG-RYPLKKPQ 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSG 240
           +L  H L     L      D+   A   R +    I  ++     S    ++Q  + G G
Sbjct: 185 DLVHHTL-----LHDSSRRDWQAYA---RQLSLQDIINVEQGPIFSHSAMVIQAAIHGQG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA--- 294
           IAL+ + + K   D+  LV    DV+      Y    +     GK+ AFR +I  KA   
Sbjct: 237 IALINNVMTKNELDSGRLVCPFNDVLVSKKAFYLVCHDNQAELGKIAAFRQWILAKAASE 296

Query: 295 -RDWKF 299
              W F
Sbjct: 297 QEKWGF 302


>gi|283832805|ref|ZP_06352546.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291072493|gb|EFE10602.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 305

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 137/285 (48%), Gaps = 13/285 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + IS++++ LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAVAEELGVSPAFISKRVALLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    EL +    P G LRI ++   G+ ++   L       P ++++
Sbjct: 68  IYEWAQRILQDVDQMMDELSDVRQIPQGMLRIISSFGFGRRVVAPALSALAKECPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 128 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFVAQHGVPKQLND 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L      TF  L+ K  +    +  +    G   I     L  N    + Q+C+ G GIA
Sbjct: 187 LS-----TFPCLVIKERDHPFGIWQMRNKEGAHSIKVTGPLSSNHGEVVHQWCLDGQGIA 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           L   + V DN    +L+ I+ +   P+  ++  Y   L  + K++
Sbjct: 242 LRSWWDVCDNIASGHLMHILPEYYQPA-NIWAVYVSRLATSAKIR 285


>gi|221210883|ref|ZP_03583863.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221169839|gb|EEE02306.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 370

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +    SFT AA  L +S+++ +R +  LE  +G+ L  R  R L  T +G   +
Sbjct: 47  MRIFARIVEMNSFTRAALSLGISRATATRTVQELEAALGMPLLVRTTRALRTTPEGEAYY 106

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   ++  +  ++ ++  PSG LR+     +   ++   L  F   +PD+ + L 
Sbjct: 107 RRCLRITADVDELEASIRRAARHPSGPLRVDLPGPVANAIVLPALGTFHARHPDLVLMLG 166

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  +  D+  D  DC++RL + +  SS + R L  +     A+P YL  C  P ++ +LD
Sbjct: 167 VSVRAADMVGDAVDCSVRLGE-LPDSSFVARPLGALERVTCASPAYLDRCGVPRTLDDLD 225

Query: 188 KHNLI 192
           +H  +
Sbjct: 226 RHRAV 230


>gi|197284474|ref|YP_002150346.1| LysR family transcriptional regulator [Proteus mirabilis HI4320]
 gi|194681961|emb|CAR41382.1| LysR-family transcriptional regulator [Proteus mirabilis HI4320]
          Length = 297

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 141/306 (46%), Gaps = 33/306 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++R F  V  +GSFT AA+ L LS+S +S  I  LETE+ + L  R+ R  TLT
Sbjct: 1   MQNQIDRIRSFIAVVDTGSFTQAAKYLRLSKSMVSIHIKALETELNVSLLNRNTRRFTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L++   +V  +LE T  + +       G LR+ +T + G++ +   L +F+ L+P
Sbjct: 61  ETGEILYQDFRQVLVQLEQTLDKARLGQQNLQGTLRLTSTAEFGEHYILPLLHQFMCLHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q I ++   D+     D AIRL   ++ S+   RKL    +    +PH LK     
Sbjct: 121 QLKVQYIFNSSIDDLINHKLDLAIRL-GALKDSNYRYRKLADYTIKLVVSPHLLKKY--- 176

Query: 181 LSIQELD-------------KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227
             IQE+              +H+ ++  D I +     + +A              + N+
Sbjct: 177 -PIQEIADLAAVPYLANSNLRHSKLSQQDKINQLFSQLHSMA------------LFETNT 223

Query: 228 YLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
             ++ Q  +   G+ +LP++ ++       LV  + ++   + ++   +P       K +
Sbjct: 224 ISALKQMALKQMGMTILPEWYIQQEITQGELVSPIPELTLLNQSINVIFPHGEHMPRKTR 283

Query: 285 AFRNFI 290
            F +F+
Sbjct: 284 LFIDFL 289


>gi|163738298|ref|ZP_02145713.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161388219|gb|EDQ12573.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 324

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 3/208 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRVSPAVTSARISQLEEYLGVRLFQRTTRNLTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++  + ++   +  P G L +A  + LG+ LL     EFL  YP
Sbjct: 60  EQGRAFYDGAVAVLDAVDVAEAKVMHLTDTPRGTLFVAAPLGLGRRLLAPQTPEFLATYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L L ++ +D++ +  D A  L +P + S+L  RK+        AAP Y+     P
Sbjct: 120 EINLRLRLSDRAVDLTSEGLDLAFFLGQP-EDSNLRIRKIADCQRVLCAAPDYVARRGMP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL 208
                L + +        P   E F WL
Sbjct: 179 EDGAALLREDHDCLNLRYPGASE-FQWL 205


>gi|83593549|ref|YP_427301.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576463|gb|ABC23014.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 308

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 122/291 (41%), Gaps = 39/291 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR G FT AAE+L ++ +++S Q+ GLE  +G+ LF R  RGL LTE+G  
Sbjct: 9   NALRAFEAAARHGGFTRAAEELGVTPAAVSHQVKGLEDVLGLCLFRRLPRGLELTEEGQA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S  + +L      L+E  +  +G+L ++       N L   L +F    P++ ++
Sbjct: 69  YLPDLSRGFDRLARAGERLREGGL--AGRLTVSVLPSFCANWLAPRLPDFQAACPEVHLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ +N+  D + D  D AIR  + I    L     +   +    AP  L        + +
Sbjct: 127 MLSENRFADFNRDGIDMAIRYGRGIY-PGLRAIPFLAEEVFPVCAPSLLNGALPLRGLAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----------------SCLQVNSY 228
           L  H L                L ++D   GEP +                   +     
Sbjct: 186 LRHHTL----------------LRSIDETAGEPWLYWRLWLAAEGIEGVAPDGGIGFTDG 229

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
            +++Q C+ G G+AL    +V+D+     LVR    +  P+   YF    A
Sbjct: 230 SALVQACLAGVGVALGRTALVEDHLRTGRLVRPFAGLSRPADFSYFAVAPA 280


>gi|115359955|ref|YP_777093.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285243|gb|ABI90759.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 309

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 123/272 (45%), Gaps = 9/272 (3%)

Query: 23  AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82
           AA QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     
Sbjct: 22  AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTD 81

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
           +++E    P+G+LRI        +     L EF   YP IQ+ +I++++ +D   +  D 
Sbjct: 82  QMRELRATPTGRLRIQMLPGFALDHFGVPLAEFNRRYPGIQLDIIVNDRVVDPVEEGFDI 141

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202
           A ++  PI S SLI+R+L  +     A+P YL     P   +EL +H    +     +  
Sbjct: 142 AFQIFPPI-SESLIERRLFVVRRLFCASPAYLDAHGAPQHPRELLQHTTALYSGYPSRN- 199

Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258
               W  T    + E  +   ++ NS   + +Y + G G+  LP  +  +      LV I
Sbjct: 200 ---RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASEALVAGRLVPI 256

Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + D      +    YP   +   K+KA   F+
Sbjct: 257 LTDFEIAPLSFAAVYPATQRQALKVKALVEFL 288


>gi|332715986|ref|YP_004443452.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062671|gb|ADY66361.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 297

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 145/303 (47%), Gaps = 38/303 (12%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA +   S++ +S+ +  LE ++G  L  R  R  +LTE G   
Sbjct: 6   RIRAFIDVVEAEGFSAAARKTGRSKALLSKYVRELEDDLGALLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIAT-----TIDLGQNLLQGNLKEFLLLYPD 121
           +R  S++  +++     ++E +    GKLRI+        D+GQ+L+     +F    P+
Sbjct: 66  YRTASDILKEIDNLADLVREKNADLKGKLRISVPRTFIDADVGQSLI-----DFAKENPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN----- 176
           + ++++ D++ +D+  +  D AIR+ + ++ S LI RK+    ++A A   ++       
Sbjct: 121 LSLEIVADDRFVDLIEEGFDLAIRITR-LEDSGLIARKISDFRVYAVATADFVARHGPLN 179

Query: 177 -----CREPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
                 R P  I    + HN + + +      +  +   T+  PI        +VNS  +
Sbjct: 180 GPQDFSRVPFIIDTNTRFHNTVRYLE-----ADGGSNSVTISGPI--------EVNSPQA 226

Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            ++    G GIA++PD+I +    +  LV + +D I+    +Y  YP       K+++F 
Sbjct: 227 TLRAARAGLGIAMVPDFIARPFIQSGELVTLFDDYISKDRGIYAVYPHRRYLPAKVRSFV 286

Query: 288 NFI 290
           +++
Sbjct: 287 DYL 289


>gi|298291216|ref|YP_003693155.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296927727|gb|ADH88536.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 287

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 13/244 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  L +F  +AR G+   A  +L  +Q ++ R++  LE   G+ LF R + G  LT++
Sbjct: 4   LEWSDLPIFLAIAREGTLGAAGRRLGQTQPTMGRRLRALEAAAGVTLFQRTSDGFVLTDE 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  ++     +  +    Q +L  S     G LR++ +   G  LL   L EF  L+P +
Sbjct: 64  GQAMYAHAIRMEDEALAMQRQLAGSDGGLEGLLRLSCSDWFGTTLLSPVLAEFASLHPKV 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+ D +   ++   AD  +R+  P     +I R+L+TI    Y      +    P +
Sbjct: 124 TVELLTDARVYSLARREADLVMRI-APFDEPEVIARRLMTIRYGLYTGSDRWR----PQA 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGI 241
                 H  +   D     M D  W+  +      PR + +  ++   I  + CVLG+G+
Sbjct: 179 GDGAGCH--LVLMDTAFGGMPDVAWITRL-----LPRATVVSRSNSRDIQARLCVLGAGL 231

Query: 242 ALLP 245
           A+LP
Sbjct: 232 AVLP 235


>gi|170700881|ref|ZP_02891868.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134199|gb|EDT02540.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 301

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 120/253 (47%), Gaps = 26/253 (10%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +  +S  I  LE +VG+ L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMTSFTRAAESLGIQKGRVSMVIRKLERDVGVALLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++  +++  Q     +  +  G+LR+    +L ++++   L + +  +P+++
Sbjct: 63  RAFYSRARDLLAEVQELQSMFSGNGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  PI   +LI R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRL-GPITDDTLIVRPLGKLRMTNAASPGYLARYGIPHTL 181

Query: 184 QELDK------HNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIM 232
            +L        H  +T G   P       W    + P G+     P  S +QVN   S+ 
Sbjct: 182 DDLRTQGHRMVHYTLTLGARHP------GW----EYPHGDGYASLPLPSAMQVN---SVQ 228

Query: 233 QYCVLG-SGIALL 244
            Y   G +GI L+
Sbjct: 229 TYHAAGLAGIGLI 241


>gi|167562974|ref|ZP_02355890.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 301

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE  +G++L  R  R  TLTE+G
Sbjct: 5   DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTEEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H    ++  ++E  +  +++      G LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVKILAEIEQAETLMRDKRGTVGGALRITAPGELGRLRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDIDVAVRIGM-LADSSLIARELAPNYRVLGASPAYLAERGMPAHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+  P+      W      P+     +    N   +   + + G+GIAL
Sbjct: 184 ADLCAHRCIVMGEQ-PR----VEWRFDGPEPVAVEVSAAFLTNDGGAARTFALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V  +     L R++ +  + +  ++  YP       +++ F +++  + R
Sbjct: 239 KSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGAELR 293


>gi|186897033|ref|YP_001874145.1| putative DNA-binding transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|186700059|gb|ACC90688.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
          Length = 303

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA +L  S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   QMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI+ +  + QN+L     + L  YP + + L
Sbjct: 66  YQGCRRMLQEVQQVHEQLYAFNNTPTGTLRISCSSTMAQNVLATMTADMLKAYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q+S L  R+L  + M   AA  YL     P      
Sbjct: 126 VAGIPAPDLIADGLDVVIRV-GALQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPAK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233
                       P  M +F+WL    RP     +  P     Q+        N   ++++
Sbjct: 181 ------------PSDMANFSWLEYNVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKAGAGIAYAP 240


>gi|325275780|ref|ZP_08141652.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099085|gb|EGB97059.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 315

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA+ GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRESHPDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+  D+  +  D +I L   +  S  + ++L   +    A+P Y+     P    +L
Sbjct: 126 TMANRVPDLLDEGYDVSIVLATELPDSGFVSQRLGITYSIVCASPAYIARHGLPHKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
            KH  +    ++   +    WL   D P G+  +    S   VN+  ++      G G+ 
Sbjct: 186 LKHACLR---MVSPVIPLEKWL--FDGPEGQEMVNITSSPFMVNTADAMKTAIRSGMGVG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y   D   + +LVR++ +       +Y  YP       K+K +  ++
Sbjct: 241 VLPIYSAIDGLRDGSLVRVLPEYRLQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|239818197|ref|YP_002947107.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804774|gb|ACS21841.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 310

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 10/252 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V R GSF  AA +L L  +++SR+I  LE ++G +L  R  R LTLT  
Sbjct: 2   LDLNDIAMFVQVVRHGSFAGAARRLGLPPNTVSRRIQQLEAQLGTRLMQRSTRRLTLTSA 61

Query: 63  GSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G   H R    V   +E  Q  L   S +PSG +R+A T D         + +FL  +P 
Sbjct: 62  GQAFHERCAGPVDGLVEAGQ-ALITGSQQPSGLVRVAATADFFDFFPMEWVADFLAAHPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREP 180
           +++  +L +   D+  +  D A R    +  S  + RKL+        A+P Y+     P
Sbjct: 121 VRVDFVLSDARADLIAEQIDIAFR-GGALPDSGYVGRKLLGARTDGMVASPAYIAARGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
            ++Q+L  H+ +T     P       W LA       E +++     N+  ++ +  + G
Sbjct: 180 ATLQDLANHDCVTS----PHPSGRTLWRLAGPGGTEEEVQVAGRFSGNTAQALRKAALAG 235

Query: 239 SGIALLPDYIVK 250
            GIALLP  + +
Sbjct: 236 LGIALLPPTMAR 247


>gi|171057516|ref|YP_001789865.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774961|gb|ACB33100.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 301

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 7/238 (2%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
           RS +FT AAE+L L++S++ + ++ LE  +G KLF+R  R + LT  G       +    
Sbjct: 17  RSRTFTDAAERLGLTKSAVGKTVARLEERLGFKLFHRTTRLMRLTADGEAYLSACTAAIE 76

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
           ++   Q  L   +   SG+L I   +  G+ +L   L E    +PD+ + L   +   D+
Sbjct: 77  EVAAAQAALSSRNQILSGRLHIDMPVAFGRRVLLPVLIEITRPHPDLSLTLTFTDATSDL 136

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG 195
             +  D AIR      SS L+ R+LVT      A+P YL+   EP+++ ++  H  I   
Sbjct: 137 LQEDVDLAIRFGALTDSSDLVARRLVTQERVICASPEYLRMHGEPMTLADVRAHRCIVGS 196

Query: 196 DLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
              P  +   +    V+R  P    R+S  +     ++M   + G GI  LP  +V++
Sbjct: 197 LKGPPLVWFVSDGGAVERFTPPATHRLSDGE-----AMMDAAIGGLGIVQLPISLVRE 249


>gi|170022733|ref|YP_001719238.1| putative DNA-binding transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|169749267|gb|ACA66785.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
          Length = 303

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA +L  S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   QMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     + L  YP + + L
Sbjct: 66  YQGCRRMLQEVQQVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKAYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q+S L  R+L  + M   AA  YL     P      
Sbjct: 126 VAGIPAPDLIADGLDVVIRV-GALQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPAK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233
                       P  M +F+WL    RP     +  P     Q+        N   ++++
Sbjct: 181 ------------PSDMANFSWLEYNVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKAGAGIAYAP 240


>gi|53722921|ref|YP_111906.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76818848|ref|YP_336155.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|134278498|ref|ZP_01765212.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167820944|ref|ZP_02452624.1| transcriptional regulator lysR family protein [Burkholderia
           pseudomallei 91]
 gi|167829297|ref|ZP_02460768.1| transcriptional regulator lysR family protein [Burkholderia
           pseudomallei 9]
 gi|167916050|ref|ZP_02503141.1| transcriptional regulator lysR family protein [Burkholderia
           pseudomallei 112]
 gi|226195570|ref|ZP_03791157.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254185979|ref|ZP_04892497.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254264934|ref|ZP_04955799.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|52213335|emb|CAH39378.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|76583321|gb|ABA52795.1| transcriptional regulator lysR family [Burkholderia pseudomallei
           1710b]
 gi|134250282|gb|EBA50362.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|157933665|gb|EDO89335.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|225932055|gb|EEH28055.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254215936|gb|EET05321.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 315

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 26/291 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L R  +E    +E+T   L  ++        G +RI+ +  +G  +L   +      +P
Sbjct: 67  AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L L N+  D+    AD A+R+ +P Q + LI R +  I +  +A   YL  C  P
Sbjct: 123 ALTVELALTNRVQDLLRREADIAVRMTRPGQ-TQLIARHIGGIELGLHAHRDYLARCGTP 181

Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               EL +H LI       F   I K    F+  A             L+ +S L+ +  
Sbjct: 182 RDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----------ALRTDSDLAQLAL 230

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
              G+GI      + K +P LVR++         ++    E L+ + + +A
Sbjct: 231 IRCGAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 281


>gi|329298649|ref|ZP_08255985.1| LysR family transcriptional regulator [Plautia stali symbiont]
          Length = 291

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 141/296 (47%), Gaps = 21/296 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++LR +  V  +GS T AAEQL  + S ISR +S LE+++   L +R  R L LT
Sbjct: 1   MKIILEELRAWVAVVDTGSITAAAEQLDQTSSGISRALSRLESKLQTTLLHRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   +E  +  + +    PSG+LR+        +++   + EF   YP
Sbjct: 61  EEGLIFLDHARQILASVEQAEEHIAQRRDMPSGRLRVNANTPFTLHVIVPLVAEFCARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  D+  ID+     D AIR+ + ++ S+L  R L         +P YL+    P
Sbjct: 121 QIQLELNTDDIVIDLLEQQTDIAIRIGE-LRDSTLRARVL--------GSPAYLEKAGAP 171

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRIS-CLQVNSYLSIMQYCVLG 238
            S+++L  H L+ F  L      D + +  V +  GE  RI   L  +S  ++ Q  + G
Sbjct: 172 QSVEDLLTHQLLGFSQL------DAHNVWPVWQREGEFLRIKPTLCASSGETLRQLALAG 225

Query: 239 SGIALLPDYIVKDN---PNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             I  L D++ +++     LV+++E D       ++  Y      + ++  F +F+
Sbjct: 226 QSIVRLSDFVSREDRASGRLVQVLENDTRELRLPIHAVYYRNQSLSSRITCFLDFL 281


>gi|52842592|ref|YP_096391.1| LysR family transcriptional regulator [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52629703|gb|AAU28444.1| transcriptional regulator, LysR family [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 308

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 137/287 (47%), Gaps = 15/287 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F       SF+ AA++L++S S +S+QI+ LE E+ + L  R    L +TE G +L+
Sbjct: 7   LKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLIRSTTRLIVTESGHRLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +++ +LE  ++       + +G +R+  T+      L     +F+  YP I+I  I
Sbjct: 67  EKALDLFEQLEVVKVIATPDQFELNGIIRLYLTVTPAIPYLTSLSIQFMRKYPGIEIDFI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   ++     D AI     ++ + L+ ++L +I  + +A+P Y+     P +I EL 
Sbjct: 127 VGSDTKELYSSTFDLAISFDD-VKHAKLVCKRLFSIQRNVFASPDYITQYGLPQTIDELP 185

Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           KHN +  T   L  K +  FN    +    G       + N+   + Q  V G G+ L P
Sbjct: 186 KHNCLINTLYGLQNKWV--FN--KKIIHVSGN-----FKSNNAGVLKQAAVAGLGLLLAP 236

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + V +   N  L++++    +P   +Y  YP+++ +  K+    NF
Sbjct: 237 YFSVYEEIKNEALIQVLPHKSSPDINLYAIYPKSIMDEQKINLLLNF 283


>gi|254249116|ref|ZP_04942436.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124875617|gb|EAY65607.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 296

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 128/300 (42%), Gaps = 23/300 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+ 
Sbjct: 12  NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                    H +     +L    VK    L I+TT       L   L +F   +PD  ++
Sbjct: 72  YFSDVQRALHAIADATDKL----VKRRAALTISTTPSFASKWLIPRLAQFTEAHPDYDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP--LSI 183
           +I D +      D  D AIR  KP     L    L  + M A  +P  L     P  L+ 
Sbjct: 128 VIADPQIATFRHDGVDLAIRYGKPPFGKHLATHALFPLDMCAVCSPSVLTAPASPRALAG 187

Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           Q L  D H      DL P+      +LA +  P+       L+ N     +   V G GI
Sbjct: 188 QVLLHDAH------DLWPE------FLAAMPAPVDVDPHKGLRFNQTSLAIDAAVAGQGI 235

Query: 242 ALLPDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           AL  + +V+ +    R+ +  D   P S   Y  YP   ++   +   R ++   A D +
Sbjct: 236 ALATEPLVERDIAAGRLCKPFDFAFPLSMGFYLVYPAERRDDDAIAVMRAWMIQAASDGR 295


>gi|33601756|ref|NP_889316.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33576193|emb|CAE33272.1| Putative LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 300

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 12/290 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+F + ++R F  VAR  SFT AAEQLH+SQ+ +S  +  LET++G +LF R  R + LT
Sbjct: 1   MNFSFRQMRAFLAVARHASFTKAAEQLHISQAGLSAMVRDLETQLGSRLFERTTRAVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L  V       L     +L         +LRI  T  +  +++   LK F  L P
Sbjct: 61  PAGQSLLPVAQRAVQDLGAAVAQLGALGAGGRDRLRIGVTPLIACSVIPDVLKRFQALAP 120

Query: 121 DIQIQLI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            ++++++ LD   I   ++  D           ++ I+R+ V     A A P      R 
Sbjct: 121 QVRVEVMDLDRSLIAARVESGDLDAGFGAFFTRAAGIRRQTVFPARLALAVPRVEGERRR 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLG 238
            +   ++D+  LI   D  P        L  V+R +G    +  +V ++L +++     G
Sbjct: 181 SVRWPQIDRDGLIALPDENP-----IQRL--VNRHLGVQGDAPARVVTHLETVLAMVEAG 233

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTV-YFCYPEALKNTG-KLKAF 286
            G A++P +         R+    + P   V Y+C   A +  G ++ AF
Sbjct: 234 LGQAVVPSFAAVARRRW-RVSLVPVAPRVAVDYYCIMRAGQGDGERIDAF 282


>gi|13476840|ref|NP_108409.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14027601|dbj|BAB53870.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 300

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF    R  SFT A  +L ++Q+++S  + GLE ++G KLF R  R ++LTE G + H  
Sbjct: 16  VFEAAGRLSSFTAAGRELGMTQAAVSYAVRGLEEQLGAKLFQRRHRQVSLTEAGERFHAD 75

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S     +  +  +L+  +    G + +A +   G   +   L++F    P I +++   
Sbjct: 76  VSLGLSHIRKSAEDLRLQAT--GGHVTLAASTAFGSFWMMPRLQQFRDELPGIDLRIQTA 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++D+DI  +    A+R  +P          L    +   A   YL     P ++ EL  H
Sbjct: 134 DRDLDIIAEGIPLAVRGGEPRDWPDYHSLPLADEEIFPVAGTSYLAKFGMPRAVGELATH 193

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            LI   +   +      W  +    +G+     L++N Y  ++Q  + G GIAL   ++ 
Sbjct: 194 RLIHLEEPYREAASWDEWFQSAGGSLGDT-ARGLRINDYGLVIQGVMEGQGIALGWRHLA 252

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +       LV++ + V+      Y  +P+  + +   +  R+++  +A
Sbjct: 253 ERLLATGLLVQVTDHVLKTGKAFYIVWPKNRELSDNARKVRDWLAAQA 300


>gi|330816309|ref|YP_004360014.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327368702|gb|AEA60058.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 316

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 136/293 (46%), Gaps = 17/293 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTEQ 62
           +WD LR F  VAR  + + AA +L +  ++++R++  LE  +   LF +  A G  LT +
Sbjct: 12  NWDDLRYFLAVARLQTASAAARRLGVDHTTVARRVRELEASLEAVLFEKSRAGGFVLTSE 71

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L     E+   +++   + +  +   SG +RI +T   G   L   L  F   +P+I
Sbjct: 72  GQRLLAYADEIETAVQSASEQFKGGANLLSGHVRIGSTEGFGSFFLAPQLAHFARAHPEI 131

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L+     + +S   AD AI L +P +    +  KL    +  Y    YL+  R P+S
Sbjct: 132 SIDLLPVPHFVSLSKREADIAILLERP-ERGQYVHTKLCDYRLQLYGTRDYLR--RHPVS 188

Query: 183 --IQELDKHNLITF-GDLI--PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             + EL +H  + +  DL+  P+       L  ++R I     + L   S ++     + 
Sbjct: 189 PRLAELREHAFLNYVADLVFSPE-------LLYLERTIPGAGAN-LSTTSIVAQYHAALQ 240

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ +A+LP ++   +  LV +    +  +   + C  E ++N  ++ A  +F+
Sbjct: 241 GTALAILPCFMAAPDERLVPVFPGEVAITRHFWLCCREDIRNLRRISALWDFL 293


>gi|238758902|ref|ZP_04620074.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia aldovae
           ATCC 35236]
 gi|238702859|gb|EEP95404.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia aldovae
           ATCC 35236]
          Length = 303

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 137/291 (47%), Gaps = 24/291 (8%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68
           VF  +   GS   AA+ L +S++ ++R ++ +E   G +L +R  R L+LT  G + L R
Sbjct: 9   VFVAIVERGSMIAAADALAMSRAMVTRYLAEMERWAGARLLHRTTRKLSLTHAGEATLER 68

Query: 69  VTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                   LE  Q   E  E  V  SG LRI+ +  LGQ+ L   + ++L LYP + + L
Sbjct: 69  CR----QMLEFAQDMAEGLEHDVL-SGLLRISCSQSLGQSALVIAVTDYLRLYPQVAVDL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            ++N+ I++  +  D A+R+   +   +LI R L T H    AAP YL     P +  +L
Sbjct: 124 QMNNRAINLVEERIDLALRITNELD-PNLIARPLSTCHSVVCAAPAYLSRQGIPRTPPDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             HN +T+     K + +F+         GE  +      L  N  + ++   + G+GI+
Sbjct: 183 AVHNCLTY-SYFGKSLWNFDLQ-------GEKSVVAVSGNLCANESVVLLNGALEGAGIS 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L P Y       + +LVR++ D    +  +Y  Y    +    L+   +F+
Sbjct: 235 LQPCYSAAPYIASGDLVRLLPDYQPQAMGIYGIYTSRRQMPAALRTMLDFL 285


>gi|212709363|ref|ZP_03317491.1| hypothetical protein PROVALCAL_00399 [Providencia alcalifaciens DSM
           30120]
 gi|212688275|gb|EEB47803.1| hypothetical protein PROVALCAL_00399 [Providencia alcalifaciens DSM
           30120]
          Length = 304

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 141/286 (49%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +   GS + AA++L +S++ ++R ++ +E   G++L  R  R L+LT  G  ++
Sbjct: 7   VQVFITIVEQGSLSGAADKLDMSRAMVTRYLAEMEQWAGVRLLNRTTRRLSLTSAGEGVY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + + ++     +  +E +  +   +G +RI+ +  + Q  L   + EFL +YP++ I + 
Sbjct: 67  QQSLQLNALSLSVPVEQKHDAKALAGLVRISCSQSIAQCALSLAISEFLQIYPNMMIDMQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + NK +++  +  D AIR+   ++  +LI + L T H    A+P +L+    P+  ++L 
Sbjct: 127 ISNKSVNLIEERIDLAIRITNQLE-PNLIAKPLSTCHSVICASPKFLQGKHLPIKPEDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +T+     + M  F         + + R+S    N  + +M+  + G+GI++ P Y
Sbjct: 186 LMECLTY-SFFGRSMWRFEKEGEESTVLVDGRLSA---NESVFLMEATLNGAGISMQPYY 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V     +  L++++ D       +Y  Y         L+A  +F+
Sbjct: 242 SVASYLQSGELIQLLPDYTPMPLGIYGVYTSRQHMPTPLRAVIDFL 287


>gi|32033547|ref|ZP_00133874.1| COG0583: Transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208384|ref|YP_001053609.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           L20]
 gi|126097176|gb|ABN74004.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 294

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 94/191 (49%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  +FT AA +L +SQS++SR I  LE+ +G++LF R  R L+LT  G
Sbjct: 6   NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L +   + + KL+     L      PSG++RI  +      +L   L +F   YP+IQ
Sbjct: 66  NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D    DI  +  D  +R    +    +  R      M    +P+Y      P + 
Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPNYFHTHGFPRTP 185

Query: 184 QELDKHNLITF 194
            +L  H  + +
Sbjct: 186 SDLAHHQCLNY 196


>gi|325527769|gb|EGD05043.1| putative HTH-type transcriptional regulator YcjZ [Burkholderia sp.
           TJI49]
          Length = 298

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 108/241 (44%), Gaps = 7/241 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +VA   SFT AA +L +SQS++S+ I GLE  + ++LF R  R ++LTE G +L 
Sbjct: 9   LSAFVMVAEERSFTRAAARLGVSQSALSQTIRGLEARLDLRLFARTTRSVSLTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +++    E+ E   KP+G +R+       Q++LQ  +  FL  +P I+I++ 
Sbjct: 69  NRVGPAMSEIDAGLEEIGELVGKPTGVVRLTADEFAVQSVLQPAIARFLPDHPGIRIEIT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    DI     D  +R  + +    +  R    I M    AP YL     P    +L 
Sbjct: 129 TDYGLADIVDGRFDAGVRRGRLVAKDMIAVRIGPDIPMTVVCAPAYLDRHPAPKRPADLV 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H  I     +P   E   W+ T  R   E RI     L   S   +    + G G+A L
Sbjct: 189 SHACINL--RLPTHGEFLPWIFT--RAGNEQRIKVDGPLVYTSIAPVRDAALAGLGLAYL 244

Query: 245 P 245
           P
Sbjct: 245 P 245


>gi|160897559|ref|YP_001563141.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363143|gb|ABX34756.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 305

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 137/293 (46%), Gaps = 8/293 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V  + SFT  A +   +Q ++++QI+ +E  + ++L  R+ RG++LTE G+ 
Sbjct: 5   DAMHMFVRVVETSSFTKVAHEFATTQPTVTKQIAAMEARLKVRLLNRNTRGVSLTEAGAL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     + + +      +Q    +  G+LRI +++  G+ +L     EF+   P +Q+ 
Sbjct: 65  YYEKCKTIVNDVAEADKVVQVRQTQVQGQLRIGSSVAFGRRVLIPLALEFMAHNPQVQVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++  D+  +  D A+RL K +  SSL  R L        A+P YL+    P    +
Sbjct: 125 LSFEDRYTDLVANGIDVALRLGK-LADSSLGARTLGVNPWVLVASPTYLRKRGTPRRPSD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + +  +  +  + +        P+       L+ N+  +++       GIA LP
Sbjct: 184 LKEHATLIYSSV--QGNDIWRLRNASGEPVSVAVTGRLRSNNLSALLAASRSHMGIAALP 241

Query: 246 DYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            Y+  D+    R++E + T   P   ++  YP       K+++F    FL+ R
Sbjct: 242 RYVAHDSLEAGRVVEVLKTCRLPEQEIHAVYPSPRLVPQKVQSF--IAFLQGR 292


>gi|116692884|ref|YP_838417.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116650884|gb|ABK11524.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 328

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 120/285 (42%), Gaps = 6/285 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 31  IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 90

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 91  EAALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPLLAQLRRDHP 150

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P Q  +L+ R++  I +  YA   YL +   P
Sbjct: 151 GLVIELVPTDRIQDVLKREADIAVRMAPPAQ-DALVARRVGEIEVGLYARDDYLAHHGAP 209

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I  L  H LI F  + P     F   A    P+ +     L+ +S L+ +     G G
Sbjct: 210 ATIDALAHHTLIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYG 264

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           I      + K +  LVR++ D +      +    E L+ + + +A
Sbjct: 265 IGFCQSALAKRDARLVRVLPDALGMRLDTWVVMHEDLRTSPRSRA 309


>gi|296113235|ref|YP_003627173.1| LysR family transcriptional regulator [Moraxella catarrhalis RH4]
 gi|295920929|gb|ADG61280.1| LysR family transcriptional regulator [Moraxella catarrhalis RH4]
 gi|326560227|gb|EGE10615.1| LysR family transcriptional regulator [Moraxella catarrhalis 7169]
 gi|326562872|gb|EGE13159.1| LysR family transcriptional regulator [Moraxella catarrhalis
           46P47B1]
 gi|326563686|gb|EGE13938.1| LysR family transcriptional regulator [Moraxella catarrhalis
           103P14B1]
 gi|326565234|gb|EGE15419.1| LysR family transcriptional regulator [Moraxella catarrhalis
           12P80B1]
 gi|326566455|gb|EGE16605.1| LysR family transcriptional regulator [Moraxella catarrhalis BC1]
 gi|326570262|gb|EGE20307.1| LysR family transcriptional regulator [Moraxella catarrhalis BC8]
 gi|326570999|gb|EGE21023.1| LysR family transcriptional regulator [Moraxella catarrhalis BC7]
 gi|326575806|gb|EGE25729.1| LysR family transcriptional regulator [Moraxella catarrhalis CO72]
 gi|326576887|gb|EGE26793.1| LysR family transcriptional regulator [Moraxella catarrhalis O35E]
          Length = 289

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 19/243 (7%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D LR   VF  V R GSF+ AA++L ++ S++S+QI  LE ++G+ L +R  R L+LTE 
Sbjct: 3   DNLRGMAVFSSVVRHGSFSGAAKELGITTSAVSQQIRSLENDLGVSLLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+   +++    E  +  + +   + SG LRIATT +L +  L   L ++L+ + ++
Sbjct: 63  GESLYSSATQMVKAAEQGRDSVIQLKDELSGSLRIATTPELAKAYLLPALSDWLVEHDNL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  I+   ++D+  D  D A+ L +  Q  +     L T+     A+P Y+KN  +  +
Sbjct: 123 SLN-IISRDNLDMIEDRVDVALLLSEQAQGIA-----LKTVEQMLIASPEYIKNHGDVEN 176

Query: 183 IQELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           ++ L  H +I  G+   + +E  D N   +V       R+S  +  N++   +     G 
Sbjct: 177 VKALATHTMIICGEKPSESIEFKDANGKQSV-------RVSSRIITNNHAIALNLAAEGY 229

Query: 240 GIA 242
           GIA
Sbjct: 230 GIA 232


>gi|261820739|ref|YP_003258845.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604752|gb|ACX87238.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 300

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 129/267 (48%), Gaps = 14/267 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F     +GSF+ AA  L++ Q ++SR ++ LE  +G++L  R  R L LT +G + +   
Sbjct: 10  FKRTVETGSFSAAARDLNMGQPNVSRYVAALEEHLGVRLLQRTTRQLVLTPEGERYYADV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S +   +  ++  L + + +P+G LR+A    +  + L   +  FL  YP + + L L +
Sbjct: 70  SRILDAVAESESSLSDET-EPTGLLRVACPTAMAHSFLVPQIPAFLARYPGLSLDLQLSD 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDKH 189
           + +D+  + A+ AIR+  P  S+  ++ + + +    Y A+  YL     P + ++L  H
Sbjct: 129 RFVDLVEEGAELAIRIGHPTDSA--LRARRIGLFTRVYVASTDYLSRRGIPQTPEDLRDH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + I +  L       +++  T     G       +VNS  +I +  + G GIA  P ++ 
Sbjct: 187 DCILYSLL--NTGNTWHFRDTEINVSGR-----FRVNSPQAIQEAVIAGLGIANGPAWLY 239

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCY 273
           +D   +  L +++ D   P   + F Y
Sbjct: 240 EDGLKSGRLCQVLCDYEAPPVPIQFLY 266


>gi|218679604|ref|ZP_03527501.1| LysR family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 240

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 1/180 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G+FT AA+ L + +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 7   MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++  +LE     L  S   PSG+LR+         ++   L +F   YPDI+I L 
Sbjct: 67  ERAAQIISELEELDGSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPDIRIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D   +  DCA+R   P    SLI R++  + M   A+P Y++    P   ++L+
Sbjct: 127 VGDRTVDYLAENVDCALRAGTP-ADQSLIARRVSEVEMITCASPSYIQKFGVPERPEDLE 185


>gi|170722261|ref|YP_001749949.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169760264|gb|ACA73580.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 305

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 127/269 (47%), Gaps = 11/269 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  + R  SF  A  ++ +S S++S  I GLET +G++L  R  R +TLT  G +LH + 
Sbjct: 14  FLAIVRHQSFNRAGLEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHTLI 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S    ++      L     +P+G++R+ T  D    LL   L  F   YPDI+I L + N
Sbjct: 74  SGPIDEIGQAMEVLNRYRDEPTGRIRLNTLSDGADLLLGPVLPLFNDRYPDIEIDLTVTN 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+     D  IR    +    + QR    I        +YL+   EP   Q+L KH 
Sbjct: 134 RLVDVIGGGHDAGIRYGGTVPEDMIAQRLSPDIRWVVAGTANYLQRFGEPKHPQDLLKHR 193

Query: 191 LITFGDLIPKCMEDFNWLATVDR-PIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPDYI 248
            +    L    M D+ +    ++  I  P  + + +    +S++++   G+G+   P+ +
Sbjct: 194 CLRI-RLGNDRMYDWEFEKNGEQLAIAVPGATTIDETRIGVSLIRH---GAGLMYAPEPV 249

Query: 249 VKD---NPNLVRIMED--VITPSFTVYFC 272
           +     + +LVR+++D   + P F +Y+ 
Sbjct: 250 IAPLVASGDLVRVLDDWSSVAPGFHMYYS 278


>gi|21240813|ref|NP_640395.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106081|gb|AAM34931.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 291

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 12/246 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L  F +VA +     A+     S++++SR+I+ LE ++G++L  R ARGL LTE 
Sbjct: 1   MDLNALIDFALVAANQGLGKASRASGRSKATLSRRITELEEQLGVRLVERSARGLKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L   T     ++       +E    P G+LR+A+ +   Q  +     +F   YP+I
Sbjct: 61  GQQLMARTEVPLSEVAEAMTAAREGLSTPRGRLRVASPVLFSQLAMGRIGADFCAAYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++++ +++ +D+  +  D AIR+  P   SSL+ R      +   AAP          S
Sbjct: 121 TLEVVAEDRTVDLVEEQFDVAIRI-NPRPDSSLVGRCFAKDRLVVVAAP----------S 169

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I       +     ++    +   W+    R   EP +  +Q +S+L +    + G G+A
Sbjct: 170 IAMPSGDAMHPVPGVVMSSFQPTTWVLDDGRLALEP-VPRMQFSSFLMVRDAVIAGGGVA 228

Query: 243 LLPDYI 248
           L+P  I
Sbjct: 229 LIPQSI 234


>gi|91223797|ref|ZP_01259061.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91191289|gb|EAS77554.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 292

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 98/187 (52%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF +AA    +S + + + +S LE  +G +L +R  R  +LTE G   +
Sbjct: 7   MKVFAYVVEHGSFRNAAHHFDISPTMVGKHVSFLEQSLGTQLIHRTTRKQSLTEAGRLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   +   +  +Q    +P+G +++   +  G+ ++   + +FL  +PD+ ++L+
Sbjct: 67  QECHRIIEDITNAENLIQTLINRPTGTVKVNCPVTYGKKVIAPIVADFLAEFPDLNVELM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN  ID     AD  IR+ + +  SSL+ RKL   HM   A+P YL+      S+ +L 
Sbjct: 127 LDNNLIDPYRSEADVIIRIGELV-DSSLVARKLGEYHMTYCASPSYLEQHAPIQSLDDLA 185

Query: 188 KHNLITF 194
            H+ + F
Sbjct: 186 HHHCLGF 192


>gi|256111989|ref|ZP_05452940.1| transcriptional regulator, LysR family protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|265993440|ref|ZP_06105997.1| LysR family transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|262764310|gb|EEZ10342.1| LysR family transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
          Length = 261

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 121/245 (49%), Gaps = 3/245 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE G   
Sbjct: 6   RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+I + +
Sbjct: 66  YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P   ++L
Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQRPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I   D   +   ++++       +  P    +++NS ++     + G G  +LP 
Sbjct: 185 TDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCMLPA 242

Query: 247 YIVKD 251
           +I +D
Sbjct: 243 FIAED 247


>gi|198245418|ref|YP_002214287.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197939934|gb|ACH77267.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326622032|gb|EGE28377.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 321

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 7/246 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I +   I R+L T      A+P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDI-NELYIARQLATNRRILCASPEYLERHGKPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243
           L +H+ +    +I +    F NW+ T  +     R++     NS   ++ + + G GI L
Sbjct: 200 LVQHDCL----MIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITL 255

Query: 244 LPDYIV 249
             ++ V
Sbjct: 256 RSEWDV 261


>gi|114561397|ref|YP_748910.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114332690|gb|ABI70072.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 293

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 11/264 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +  +V  SG F+ AA+ L++  + +SR +S +E ++G+ +  R  R + LT++G +
Sbjct: 6   DDLDILLMVVDSGGFSAAADALNIQVARVSRAVSKIEQQLGVTILNRTTRRVELTDEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +L+  + EL      P G+LR+        + L   +K+F   YPDI++ 
Sbjct: 66  FVESVRGGLQQLQRAEDELVRRGELPQGRLRVDAASPFVFHQLVPLMKDFRAAYPDIELA 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    +H  A+  YL     P  + +
Sbjct: 126 LTSNEGYVDLLEKRTDVAIRIGK-LADSTLHARPLGKSALHIVASAEYLARRGVPQKVSD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+ F +  PK +   +W L   D  +  P IS    ++  ++ Q  + G+GIA L
Sbjct: 185 LACHELLGFTE--PKILN--HWPLKGCD--VITPTIST---SNGETLRQLALAGNGIACL 235

Query: 245 PDYIVKDNPNLVRIMEDVITPSFT 268
             +++ D+    R++  + +  FT
Sbjct: 236 SSFMINDDLAAGRLVPILQSEKFT 259


>gi|293396104|ref|ZP_06640385.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291421602|gb|EFE94850.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 312

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 14/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  SG+F+ AA  L L +S+++RQI  LE ++ I L +R +R LTLTEQG   +
Sbjct: 22  MQTFIRVVESGAFSRAATLLDLPKSTVTRQIQALEQQLNITLLHRTSRRLTLTEQGRAYY 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +   +L   +  +  +   PSG + ++    L  + +  +L +F   YPDIQ+ L 
Sbjct: 82  QGAVQWLEQLRQFEGGVIGAGQAPSGVIHVSMPHTLAYHKVIPHLTDFYRRYPDIQLTLN 141

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N  ID      DC +R+   + + +LI R L T+     A+P YL+    P     L 
Sbjct: 142 LANHAIDPIEAQVDCVVRI-GALMNDTLIARSLGTLERITCASPDYLQRHGTPTHPNALR 200

Query: 188 K-HNLITFGDLIPKCMEDF-NWLATVDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H +I    + P+  + F + L   D  +   G+ R +   VN   + +     G G+ 
Sbjct: 201 RDHQMIHV--VSPQSGKPFIHQLLRQDERVTLDGDWRFA---VNDANAALHAARAGLGVV 255

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               ++ ++      LV I+ D       V+  +PE      K++ F ++I
Sbjct: 256 TTYHFLAEEALRRGELVPILPDWQCEPAAVHIAWPENRHLASKVRYFIDWI 306


>gi|269959905|ref|ZP_06174282.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835204|gb|EEZ89286.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 292

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 140/296 (47%), Gaps = 29/296 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +KL +F  VA++ +F+ AAEQL +S+S +S QI  LE+E+   L  R  R + LT +G  
Sbjct: 8   EKLMLFAEVAQTLNFSRAAEQLGISKSYLSEQIKRLESELATPLIVRTTRSVRLTAEGES 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++  ++   +  L + S +  G +R+       + +L      F  L+P+++ +
Sbjct: 68  IFAQAEDLKRRVMEMEKSLSQQSEQIDGLIRLTAPKMFAEAVLHDLCVAFRALHPNVEFE 127

Query: 126 LILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +  +++    D A R  R P +  ++I   L+  +    A+P YL+    P ++ 
Sbjct: 128 ILSSYQAFNLTETSVDFAFRATRTPPE--NMIAHHLLNYYHWLVASPQYLQEEGTPETLA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238
           +L +H  +T        +    W      P+   +   +Q   +LS      + +  + G
Sbjct: 186 DLKQHQCLT-------TLHQKEW------PL---KTGTVQTQGWLSSNENRLLKESALSG 229

Query: 239 SGIALLPDYIVK---DNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L  Y V+   +N  LV+++ E+       VY  YP+ +  + K KAF  F+
Sbjct: 230 NGIARLASYFVEQDVENGRLVQVLSEETDHQHNAVYLVYPQLIYQSAKTKAFIEFV 285


>gi|254463336|ref|ZP_05076752.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           HTCC2083]
 gi|206679925|gb|EDZ44412.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 301

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 133/300 (44%), Gaps = 14/300 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +WD LRVF  VAR  S + A ++L +  +++ R+++ LE  +G  LF +   G  L+
Sbjct: 1   MAQNWDDLRVFLAVARGQSLSAAGKRLRIDPATVGRRVARLEQRMGTPLFAKSPLGYELS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLL 117
             G++L  +       +      L  S+      +G +RI         LL       + 
Sbjct: 61  ASGARLLPLAEHAEQAMGAAGELLGTSNTHGNELNGSIRIGAPDGCANFLLPQVCARIVQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +Q++   + +++S   AD AI +  P      +Q KL    +H  A P YL+  
Sbjct: 121 DHPDLDVQIVALPRVVNLSKREADMAITVSAPTAGRLTVQ-KLSDYKLHLAAVPQYLQRA 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               S ++L  H +I +   +P  +  ++ ++L      +G  R+  L  NS        
Sbjct: 180 SALQSKEDLRHHRMIGY---VPDMIFDKELDYLGA----LGVERVP-LASNSVSVQFNAI 231

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             G+G+ ++ D+ +   P L R++ D I+ + + Y     + +   +L  F   +    R
Sbjct: 232 RQGAGLGIVHDFALPSAPELKRVLTDEISLTRSFYLVRHSSDRRLQRLNRFAQALVAGVR 291


>gi|121604447|ref|YP_981776.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593416|gb|ABM36855.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 309

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 17/295 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  VA  G F  A   L L +S +SR+++ LE+ +G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVAERGGFAAAGRALGLPKSRLSRRVAELESRLGVRLLQRTTRKLSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R  S +  +       +    V+P G LR+   + L Q+ L   +  +L L+P ++
Sbjct: 63  DIYLRHCSAMRDEALAAAEAVAHLQVEPRGMLRVTCPVTLAQSTLGYLIPRYLALFPLVK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L + N+ +D+  +  D A+R+R  +  S SL+ ++L     H  A+P  L+    P +
Sbjct: 123 LDLRVTNRVVDLVEEGIDIALRVRPTLDDSGSLVVKQLGATCGHLLASPEQLRRQGTPAT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVL-G 238
           +++L +       D +     D      +  P G+  +   Q   V   L  ++  VL G
Sbjct: 183 LEDLARL------DTVAMSATDGRSAWVLVGPDGQEFVFQHQPRYVADDLQTLKLAVLAG 236

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +GI+ LP+++ +       LV ++          +  +P      G++ A R+F+
Sbjct: 237 TGISFLPEFLSRAELQAQLLVPVLPGWAPKPGMAHAVFP---SRRGQIPAVRSFL 288


>gi|109898963|ref|YP_662218.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109701244|gb|ABG41164.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 301

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 28/301 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  ++ +  F  VA +  F+ AA +L ++ S ISR+++ LE E+G+ L  R  R + LT
Sbjct: 8   MNISFNGIIEFVAVAETHGFSAAARKLGVNVSHISRKVAALEKELGVSLLARSTRTVRLT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G        E+ + L+     + +  V+ SG L+++   +  +  +   L EF  L+P
Sbjct: 68  DAGQAYFARCQELVYGLQEANETVLDKQVELSGVLKVSAAGEFAEQHIAPLLIEFGQLHP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I++  +++ ++   D  D +IR   P++ SSLI RKL    + A A+  YL+    P
Sbjct: 128 KLTIEMDFNSQMVNFVDDAFDFSIRY-GPMKDSSLIARKLTNRSLVAAASKRYLEVNGTP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVL 237
               EL  H          +C+   N     D   +P+     +  + NS  S++  C  
Sbjct: 187 AHPNELTSH----------QCLMTNNSTWFFDNQGKPLEVKLDARWRSNSVRSVVLACER 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GIA LP     D     ++V I+          +  Y           A RNF+  KA
Sbjct: 237 GLGIAYLPRSSFGDALKGGSVVPILAPFWNREIATWIVY-----------ANRNFLPAKA 285

Query: 295 R 295
           R
Sbjct: 286 R 286


>gi|94314490|ref|YP_587699.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93358342|gb|ABF12430.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 332

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 132/296 (44%), Gaps = 23/296 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DW    +F  V   G FT  AE   + +SS S  ++ LE ++G++LF R  R + +T+
Sbjct: 3   SIDWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLEGQLGVRLFERTTRRVRVTQ 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L+   + ++ +L     E    S + SG +RIAT  ++G   L   +   L L+P 
Sbjct: 63  RGQQLYDRVAPLFGELREISAEAASVSEEVSGTIRIATPYEVGSQHLSPTVNRLLKLHPS 122

Query: 122 IQIQLIL--DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +++QL +  D  D+ I   Y    +     +  SS   +++V I    YAAP  ++    
Sbjct: 123 LRVQLDVSWDQPDL-IRHGYDLAFVMTDTGLSDSSFASKRVVLIERAFYAAPSLIRERGL 181

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW------LATVDRPIGEPRISCLQVNSYLSIMQ 233
           P + Q+L      T G+L     +D  W      + T    + EPRI C   N+ +    
Sbjct: 182 PRTPQDL--QGWPTVGNL-----DDTRWEFLRDGVETFAMDV-EPRI-CTH-NAEVR-FN 230

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             V G G+  L    V++      LVR++    +    VY   P        ++AF
Sbjct: 231 AAVDGLGVTRLSPRFVREALVEGKLVRVLPGYASSPLKVYVLMPARKLMPASVRAF 286


>gi|157371949|ref|YP_001479938.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323713|gb|ABV42810.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 298

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 146/301 (48%), Gaps = 17/301 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +L +F  V  +GSFT AA  L  +++ +S  +  LE+E+G+ L  R  R L LT+ 
Sbjct: 2   LNLQRLAIFVAVVDAGSFTAAAVALGQTKAVVSFNVKQLESELGVSLLVRSTRRLALTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++    +    E    +++      SG LRI TT + G  ++   L  F  L+P +
Sbjct: 62  GERFYQRCLRLLQDAENVLDDVRRDHHGLSGVLRITTTPEYGAQVVVPALAAFSQLHPRL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL- 181
           +IQ +  +   D+  +  D AIRL +   SS    R L +  +   A+P YL   R P+ 
Sbjct: 122 RIQHVSSSYHADLISERFDVAIRLGQLADSSHHAAR-LDSFAILPVASPAYL--ARHPVG 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           S+ +L +   I    L        NW + T +R     ++   + L  +S  +++ + + 
Sbjct: 179 SLAQLAQAQWIAHSRL----SSPLNWQVITPERQAVLFKVEDAATLMGDSAAALLAFALH 234

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+G+ALLP+++V+       L  ++ D   P  ++Y  YP       K++AF +  FL+A
Sbjct: 235 GAGVALLPEWLVRPAIAEGKLCSLLADHQFPIQSIYALYPNTRHVPEKVRAFID--FLRA 292

Query: 295 R 295
           R
Sbjct: 293 R 293


>gi|160896327|ref|YP_001561909.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361911|gb|ABX33524.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 336

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 119/293 (40%), Gaps = 22/293 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V R G  + AAE LHL+QS++S+QI  LE  VG+ LF R  + L LT  G +  
Sbjct: 13  LRAFSTVVRFGGVSRAAEALHLTQSAVSKQIQELEKWVGVPLFERERKRLRLTPAGERYE 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +  +LE   +EL  S     G L +++        L   L +F   YP I +  +
Sbjct: 73  RAVRALLGQLEAATLELITSDDS-RGALHLSSLPTFAAKWLIPRLPQFQQRYPQITLHFV 131

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                        DCAI           +  L+ R++  I     A P        P  +
Sbjct: 132 PYVHSYQFDSPGLDCAILFGDGHWNGAHAHYLVGRQVALIAPPRGAGPE--ARITTPQDV 189

Query: 184 QELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               +   +T  D   +  E    N ++ +  P         Q + + +I++  + G GI
Sbjct: 190 ARCTRLRHVTIPDAWARWSEAHGVNGISPLAGP---------QFDQFQTIIRAVMAGMGI 240

Query: 242 ALLPDYIVKDNPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL+P  +V D      + E +       +   + CYP    N G L  FRN++
Sbjct: 241 ALVPRCLVHDEIAAGLVNEPLPQHGYQSALGYWLCYPADRANHGTLGIFRNWL 293


>gi|56461290|ref|YP_156571.1| LysR family transcriptional regulator [Idiomarina loihiensis L2TR]
 gi|56180300|gb|AAV83022.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR]
          Length = 308

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 1/162 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           ++  D +R F +VA+ GSF  AA  L +  S++SR+I+ LE ++ ++LF R A  + LT 
Sbjct: 11  NYSLDDMRCFCMVAQYGSFKQAAVALQMPLSTLSRRIAKLEQDLALRLFNRDAHRVQLTF 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +R ++ ++ +L+     LQ+   +  G +RI+  I+    +L  +   F+  YPD
Sbjct: 71  AGQRYYRRSAPIFDELDNVAACLQQDRNEAKGTIRISAPINFSVQVLVHHFNAFMRQYPD 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI 163
           I++ L L N+ IDI  +  D A R+     ++  I R+L  I
Sbjct: 131 IELDLKLSNQTIDIDEEAMDLAFRIGHH-SATHWIGRQLTNI 171


>gi|319781078|ref|YP_004140554.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166966|gb|ADV10504.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 302

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 3/198 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ ++ F  VA SGS + AA +L  SQ ++ R I  LE  +G+ LF R   G  LTE 
Sbjct: 4   IDWNLIKSFVTVAESGSLSAAARKLSASQPTLGRHIGELEQALGVTLFRRGRHGYELTEA 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS L      V  +     +    S     G +RIA +  +   +L        +  P I
Sbjct: 64  GSTLLERGKAVSEQASAFSLLALGSVEAIEGTVRIAASEVVAAYVLPEMTMRLGIEEPGI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++++  N+  ++    AD AIR+ KP Q + L+ RK+  I + A AA  YL     PL 
Sbjct: 124 EVEIVASNQVENLLRRDADIAIRMVKPAQ-NELMARKVCDIELCACAAKSYLDRRGRPLK 182

Query: 183 IQELDKHNLITF--GDLI 198
             +L  H+L+ F  GD I
Sbjct: 183 PADLVDHDLVGFDRGDEI 200


>gi|221196150|ref|ZP_03569197.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221202824|ref|ZP_03575843.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176758|gb|EEE09186.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221182704|gb|EEE15104.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 309

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 140/295 (47%), Gaps = 31/295 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR GSFT AAEQL ++Q ++SRQI  LE   G  LF RHA+GLTLT +G +L 
Sbjct: 29  LQIFSTVARHGSFTRAAEQLCVTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 88

Query: 68  RVTSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            V +E + ++E  ++++  Q + +     L++ T +      +   +  F   +PD+ +Q
Sbjct: 89  PVVNESFARIEDISSKLTRQRTDL----ALKVPTCV---MRWMLPRIMRFQGEHPDLHVQ 141

Query: 126 LILDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SI 183
           +    +  +D S +  D AI +      + ++   L    +    AP   +    PL ++
Sbjct: 142 ITTAWQHVVDFSSEPFDAAI-VYGTSPGAGVVALPLFGERLTPVCAPELRQTA--PLDAV 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLA--------TVDRPIGEPRISCLQVNSYLSIMQYC 235
            +L +H L+          +  +W A        TVD P   P    L + +  ++  + 
Sbjct: 199 DDLARHTLLH------PTRDHRDWRAWLEHAGVRTVD-PERGPTFDTLDLATNAAMQGFG 251

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V    + L+ D +      L R  + V+      +F YPE+  +  K++AF ++I
Sbjct: 252 VAIGDVTLVDDDVSAR--RLERPFDIVLETGARYFFVYPESGGSQQKIRAFSDWI 304


>gi|254460625|ref|ZP_05074041.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           HTCC2083]
 gi|206677214|gb|EDZ41701.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 298

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 133/275 (48%), Gaps = 15/275 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +SFDW+  R F  V  +GS + AA  L+ +Q ++ RQI+  E E+G+ LF R  R L +T
Sbjct: 6   ISFDWNHARAFLAVVETGSLSAAARVLNQTQPTLGRQITAFEEELGVTLFERVGRSLKIT 65

Query: 61  EQGSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           + G+ L    R  ++   ++ T     Q  +++  G +RIA +     +LL   + +   
Sbjct: 66  QTGADLADHVRAMADAAGRM-TLMASGQSQAIE--GIVRIAASELFAAHLLPPIVAKLRS 122

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           + P I++ ++  N   D+    AD A+R  +P Q   LI R +       YA+  Y++  
Sbjct: 123 IAPKIEVDIVAANTVSDLLQREADIAVRNVRPEQ-PDLIARLIHDSSGRFYASKGYIQKR 181

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P + Q+   H+ ++FG+      +   +LA +   +   +      NS ++  +    
Sbjct: 182 GRPRNYQDFKTHDFVSFGN----TDQMLEYLAMLGLELTADQFKVGSSNSLVA-WEMVKQ 236

Query: 238 GSGIALLPDYIVKDNPNLVRIMED---VITPSFTV 269
           G GIA +   + + +P+L  ++ D   V+ P++ V
Sbjct: 237 GLGIAPMSVDVARASPDLEVLLPDSDPVMFPTWLV 271


>gi|51597840|ref|YP_072031.1| DNA-binding transcriptional regulator [Yersinia pseudotuberculosis
           IP 32953]
 gi|51591122|emb|CAH22787.1| probable lysR-family transcriptional regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
          Length = 303

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA +L  S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   QMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     + L  YP + + L
Sbjct: 66  YQGCRRMLQEVQQVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKAYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q+S L  R+L  + M   AA  YL     P      
Sbjct: 126 VAGIPAPDLIADGLDVVIRV-GALQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPAK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233
                       P  M +F+WL    RP     +  P     Q+        N   ++++
Sbjct: 181 ------------PSDMANFSWLEYNVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKAGAGIAYAP 240


>gi|270263110|ref|ZP_06191380.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042798|gb|EFA15892.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 301

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 121/251 (48%), Gaps = 11/251 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  V   GSF+  AE++ LS + I   I  LE  +GI+L  R  R  +LTE GS 
Sbjct: 5   ESMSVFVRVVERGSFSAVAEEMRLSGTMIGLHIKALEQHLGIRLLNRTTRRQSLTEFGSA 64

Query: 66  LHRVTSEVYHKLETTQ---IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            ++   ++   +E T+   + L +S   P G+L++A  +  G + L      FL  +P++
Sbjct: 65  YYQRCRQILADIEDTESIALALHQS---PRGRLKVACPVSFGVHALSPVTARFLTAWPEM 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+L +K +D++ +  D  I++ +    +SL+   L        A+P YL +   P+ 
Sbjct: 122 TLDLVLSDKMLDMAEEGVDVMIKVGELEHVNSLVAHPLAAYQSVICASPDYLAHSGTPVH 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            Q+L +H  + F       +    W L    + I  P    + VN+  ++    + G GI
Sbjct: 182 PQDLTEHRCLGFA----HPLAGSEWTLQQGGKLIKVPVNIVMAVNNGEALRSAALNGLGI 237

Query: 242 ALLPDYIVKDN 252
            + P+ ++ ++
Sbjct: 238 LMQPEVLLAED 248


>gi|218510469|ref|ZP_03508347.1| regulatory protein, LysR:LysR, substrate-binding [Rhizobium etli
           Brasil 5]
          Length = 308

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA +L ++ S++S  I  LE  +G++L  R  R +  T+ G +
Sbjct: 7   NDLQAFLAVARDQSFTKAAAKLGVTASALSHTIRQLEARLGVRLLARTTRNVAPTDAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R     + ++     EL E   KP+G +RI  T D  + +++  L  FL  +P+I+++
Sbjct: 67  LMRAIGPHFDEIAARVQELGELRDKPAGTIRITCTDDSIEMVIRPLLAGFLQQFPEIKLE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             +D    ++  D  D  IRL + I    +  R      +   A+P Y ++   P++  +
Sbjct: 127 FYVDYGFSNVVEDRFDAGIRLGEAISKDMIAVRIGPDWRLIVVASPGYFQHNAPPVTPHD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +  H  +         +  + W  T + +         L  NS L ++   + G G+A +
Sbjct: 187 ITNHACVNIRHRASGPI--YAWEFTENGKEFTVKGDGQLVFNSTLHVLNGAIDGIGLAYV 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVY-FCYPEALKNTGKLKAF 286
           P+ +      +  LV+++ D   P F+ Y   YP     +    AF
Sbjct: 245 PEQLAMPYIADGRLVQVLSD-YCPYFSGYHLYYPNKRHASPAFSAF 289


>gi|116695449|ref|YP_841025.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529948|emb|CAJ96295.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 310

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 128/294 (43%), Gaps = 14/294 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F    R GSFT AA +LHL+QS+ISRQ++ LE  +G KLF R  R L LT  G + 
Sbjct: 20  NLVAFEAAMRHGSFTRAAAELHLTQSAISRQVAQLEDFLGRKLFIREPRALRLTVSGQRY 79

Query: 67  HRVTSEVYHKLETTQIELQES--SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               +EV  +L     E  E    V+    L +A +  +    L   L  F   +P+IQ+
Sbjct: 80  ----AEVVQRLLVGCAEATEDVMKVRSHTALTVACSSGVAVLWLTPRLASFREAHPEIQL 135

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L +++    +S    D  +   +      L  R+L    +    AP YL N R  L+  
Sbjct: 136 RLTVNDSLASLSPAEFDIGMYYLREGPPPGLAARRLYGEEVFPVCAPGYL-NGRT-LAPA 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243
            L    L+   D   + M    WLA    P    R + L  N Y  ++Q  + G GI L 
Sbjct: 194 ALANETLLMLDDGQRQWMSWQTWLANQGLPDATLR-NVLTSNQYPILLQLAMEGHGIVLG 252

Query: 244 ---LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + D  +++   LVR  E   +     Y  +P         +AFR+++  +A
Sbjct: 253 WRHMIDACLREG-LLVRASEASASLGGGYYAVWPRDRMEPAAARAFRSWLVRQA 305


>gi|251790758|ref|YP_003005479.1| DNA-binding transcriptional activator GcvA [Dickeya zeae Ech1591]
 gi|247539379|gb|ACT08000.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 308

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 132/299 (44%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++  L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSALNEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNTEYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ +   D  D AI   +      L   KL   ++    AP  L           
Sbjct: 127 IQAVDREEERLSDDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCAPQLLAG--------- 176

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238
             +H L T GDL+   +       +WLA   R +G  +I+  Q    +    ++Q  + G
Sbjct: 177 --EHPLKTPGDLVWHTLLHDASRRDWLAYT-RQLGIAQINVQQGPIFSHSAMVLQAAIHG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 234 QGVALANNVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|261378797|ref|ZP_05983370.1| transcriptional regulator, LysR family [Neisseria cinerea ATCC
           14685]
 gi|269144776|gb|EEZ71194.1| transcriptional regulator, LysR family [Neisseria cinerea ATCC
           14685]
          Length = 296

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L  F  +A++ SF  A + L +S S++S  +  LET + ++LF R  R ++LTE G
Sbjct: 3   NFNELNYFLTLAQTQSFVKAGQLLGISSSALSHSMKNLETRLNLRLFNRTTRNVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S +Y  +      L +    PSG +RI       + +L   LK  L  YP I+
Sbjct: 63  QQLFDQLSPLYQAINQEVDALNDFLNTPSGLIRINAPAMAAEAVLYPKLKPILNQYPKIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++D++  DI  +  D  +RL   +    +       + M   A+P YL     P +I
Sbjct: 123 LEIVVDDRWADIVKEGFDIGVRLGNKVAKEMIAVPISAPLKMVLVASPDYLAQHGSPKNI 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L +H LI    L  +   +  W     + +    P+ S   +N++L  +Q    G GI
Sbjct: 183 DDLQQHRLIGI-KLSAEHGTEMQWEFKYKKELITFTPK-SHFSINNHLR-LQAVSDGLGI 239

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A +    V D  N   LV ++ +       +Y  YP    ++   K   + + +KA
Sbjct: 240 AWVAHMSVADELNSGHLVELLPEYAMTYEPLYLYYPSRRGHSNVFKLIVDALKVKA 295


>gi|90414488|ref|ZP_01222463.1| Hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90324396|gb|EAS40958.1| Hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 301

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 17/290 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V    SF+  AE   +++S +S++IS LE ++G++L YR  R LTLTE GS 
Sbjct: 5   DDLVLFTQVIEHASFSKVAELNKITKSVVSKRISKLENQLGVQLIYRTTRKLTLTEPGSI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+  + ++    ++    +   S   SG +R++     G+ LL   L +F   +P + ++
Sbjct: 65  LYHRSKDINQVAQSAFDAITGYSEALSGNIRVSVPTISGELLLAEALSDFCQKHPGLTVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +DN  +D+     D  IR    ++ SSLI R +        A+  YL+    P + + 
Sbjct: 125 MSMDNHFVDLVAQNYDLVIRTGY-LEDSSLIARHIFNSRWVICASTDYLEKNGIPETPKA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L  HN + +     +    F+WL   +          L+VN   S      + +  +  +
Sbjct: 184 LQHHNCLGYTQ---QSTGPFDWLFIRN----NTETYTLKVNGNFSSDNAVALRKATLANN 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GIA LP  +V D+     L+ ++ +       +Y  YP   K + +++A 
Sbjct: 237 GIAYLPTCLVFDDLKSGKLIEVLPEHSGKVVGIYAVYPYTKKPSKRIQAL 286


>gi|17932867|emb|CAD19474.1| hypothetical protein [Enterobacter cloacae]
          Length = 295

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 148/292 (50%), Gaps = 15/292 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA +GSFT AAE + L+++ +S  I  LE E+G+ L  R  R LTLTE G   H+ 
Sbjct: 9   MFIAVADTGSFTAAAEAMGLTKAVVSFHIRQLEEELGVTLLLRTTRRLTLTEAGKLFHQR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +    E  Q +++ +    +G+LRI TT + G  ++   L EF  L+PD++++ +  
Sbjct: 69  SVMLLRDAERLQDDVRANHAGLTGELRITTTPEYGSQVVVPLLAEFSQLHPDLRVRHVSS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELDK 188
           +   D+  +  D AIRL   +  S      + +  +   A P +L N   P+ S+++L +
Sbjct: 129 SLHADLIAERFDVAIRL-GTLADSRYHAALMTSFTILPVATPGWLAN--HPVNSLEQLAE 185

Query: 189 HNLITFGDLIPKCMEDFNW-LATVD-RPIGEP--RISCLQVNSYLSIMQYCVLGSGIALL 244
            + I    +  +      W +  VD +P+     R   L  +S  ++M + + G G+ALL
Sbjct: 186 ADWI----IHERLTSPLRWQVRGVDEQPVSFEIKRAPRLYADSAQALMAFALAGCGVALL 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P+++V+   D   LV ++         +Y  YP+A     K++ F +F+ ++
Sbjct: 242 PEWLVRNALDAGELVSLLPAYTFAQQGIYAVYPDARHVPAKVRTFIDFMRVR 293


>gi|66045459|ref|YP_235300.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256166|gb|AAY37262.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 317

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E+  G +L +R  R L LT  G     
Sbjct: 29  RVFIAINDRGSLIAAAEALDMSRAMVTRYLAQMESWAGARLLHRTTRKLGLTAPGQVTLL 88

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +  +L  YP     L++
Sbjct: 89  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSADLLI 148

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        AAP YL     P   QEL  
Sbjct: 149 GNEAVDLVSERIDLAIRITNQL-DPNVIARPLGQCASVVCAAPAYLAVHGTPSRPQELTA 207

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K + +F        P+  P    L  N  + +++  V G+GI+L P + 
Sbjct: 208 HNCLTY-SYFGKSLWEFT---RQQMPLSVPVGGNLSANDSVVLLEAAVAGAGISLQPVHS 263

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  L+ +M +    +  ++  Y      +  L+ F +F+
Sbjct: 264 AAPLIASGKLIALMPEYQPRALGIHAIYTSRHHQSATLRTFLDFL 308


>gi|113969435|ref|YP_733228.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113884119|gb|ABI38171.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 307

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 130/280 (46%), Gaps = 14/280 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  +VF  +   GS   AAE L +S+S ++R ++ +E   G +L +R  R L+LT+ G +
Sbjct: 5   EAAKVFVTIVERGSMIGAAEALDMSRSMVTRYLAEMEEWSGARLLHRSTRRLSLTDAGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +    +         S +P G LRI+ +  +   LL   ++ +L  YP   + 
Sbjct: 65  VLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLLLPSVVRPYLAQYPQASVN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL  C   ++  E
Sbjct: 125 FHVTSQTVDLVAERIDLAIRITNEL-DPTLIARRLGECESVVCAAPSYLA-CHSAITHPE 182

Query: 186 -LDKHNLIT---FGDLIPKCMED-FNWLATVDRPIGE----PRISCLQVNSYLSIMQYCV 236
            L +HN +T   FGD++ +  +      AT  + +G+    P    L  N  + ++   +
Sbjct: 183 NLTRHNCLTYSYFGDVMWRFTQTPIAAKATSTQEVGQIFNIPVKGNLSANDSMVVLNATL 242

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            G GIA+ P +  K   D+  LV ++ +    S  VY  Y
Sbjct: 243 AGEGIAMQPLWAAKPHLDSGALVPLLREYKPQSLGVYGVY 282


>gi|294142515|ref|YP_003558493.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328984|dbj|BAJ03715.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 301

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 138/301 (45%), Gaps = 23/301 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F V+A  GSFT AAE L  S+S +S+Q+S LE+ +G+ L  R  R   LTEQG    
Sbjct: 11  VKAFTVIAEQGSFTKAAEVLICSRSHLSKQLSHLESYLGVTLITRTTRAQRLTEQGLAFF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                    ++       +++    G ++I      LG+ ++ G + +F+L YP I ++L
Sbjct: 71  SRCKAALDSIDQAVDIAVDNAQNLQGSIKINCVGGYLGEEVVAGLINDFILKYPGISVEL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+ +D  D   R+ + ++ S L+ RKL+ I     A+P YL++   P   + L
Sbjct: 131 DFSSQRVDLLVDQFDLVFRMGE-LEDSGLVARKLMDISNLTLASPKYLQSRGYPQDPKSL 189

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYL------SIMQYCVLGS 239
             H  IT G +        NW    VD   GE ++  + +N         ++    + G+
Sbjct: 190 KTHQCIT-GSI-------NNWSFYHVDN--GEHKLD-VHINGVFRCKNGRAMKHSALAGN 238

Query: 240 GIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  LP  Y V++     LV + ED        Y  Y +       L+ F  F     +D
Sbjct: 239 GIVRLPQLYCVEELNRGELVSVFEDWRVADTPFYLLYHKDKFQPAILREFVGFTAEHFKD 298

Query: 297 W 297
           +
Sbjct: 299 Y 299


>gi|326317491|ref|YP_004235163.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374327|gb|ADX46596.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 324

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 95/182 (52%), Gaps = 12/182 (6%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSF  A   L +S S++ + ++ LE E+G++L  R  R + LTE+G + H     +   L
Sbjct: 20  GSFVAAGRALGISASAVGKAVAKLEQELGVRLLQRSTRRIALTEEGRQFHERCRRILDDL 79

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           +  +  + +++  P G+LR++  I +  +LL   L EFL  +P +++ +  +++ +D+  
Sbjct: 80  DDARAMVSQAAAAPRGRLRVSVPI-VAYHLLLPRLPEFLERHPQVELDIDFNDRIVDLIG 138

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-----AAPHYLKNCREPLSIQELDKHNLI 192
           +  D AIR      S  L   +L+++ +  Y     A+P YL     P ++ +L  H+ I
Sbjct: 139 EGVDIAIR------SGDLPDSRLMSLPLRHYRSLLCASPEYLARRGTPAAVGDLADHDGI 192

Query: 193 TF 194
            F
Sbjct: 193 AF 194


>gi|126667107|ref|ZP_01738082.1| putative transcriptional regulatory protein (LysR family)
           [Marinobacter sp. ELB17]
 gi|126628513|gb|EAZ99135.1| putative transcriptional regulatory protein (LysR family)
           [Marinobacter sp. ELB17]
          Length = 267

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 6/244 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA +GSF+ A+E   +  SS+SR+++ LE  +G  L  R  R + LTE G   +
Sbjct: 7   IRYFVKVAETGSFSRASEHFGVPPSSLSRRVADLEAHLGTSLLKRSTRVVKLTEIGQNYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +LE T   + +   +P G+LRI++ +  G+ +    +  F   YPDI + + 
Sbjct: 67  AEVCHILSQLEATDEAVGQYQSRPIGRLRISSMVGFGETIFLPLMDRFSARYPDITLDIT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +    ++ D  D AIR         +I  +L+     A A+P YLK    P +  +L 
Sbjct: 127 LTDSLSVLNRDDVDLAIR-GGFAPDERVIATRLMDNRFIAVASPTYLKRFGNPHNPGDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
            H  + F    P+      WL  VD  + +       + NS   +      G GI LLP 
Sbjct: 186 NHKGLYF--RTPQGPTP--WLCEVDGRLQDVSAPAAAISNSGHWLRDKAERGEGILLLPR 241

Query: 247 YIVK 250
           ++++
Sbjct: 242 WVLE 245


>gi|330005616|ref|ZP_08305294.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328536182|gb|EGF62563.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 308

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  V R  SFT AA +L ++ S++S  +  LET +G++L  R +R +  T+ G
Sbjct: 13  DLADLNAFRTVERLRSFTQAAVELGITTSALSHSVRNLETRLGVRLLNRTSRTVAPTDAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S L R     ++++     E+     +P G+LRI    D  + +L   L +FL  YPD++
Sbjct: 73  SNLARRLEIGFNEIGEALDEINLLRDRPVGRLRINVLADGARLILSKLLPKFLQTYPDVE 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D+K +DI     D  IR    +    +  +    +   A A+P YL   + P+  
Sbjct: 133 VEVAVDDKMVDIVSAGFDAGIRFGGTVPEDFVAVKLGPELRWVAVASPRYLYRKQAPVIP 192

Query: 184 QELDKHNLI 192
           ++L  HN I
Sbjct: 193 EDLKSHNCI 201


>gi|323498906|ref|ZP_08103889.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323316018|gb|EGA69046.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 299

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LT+ G   +
Sbjct: 10  IRSFVLIAQLGNFTKAAEALDVSRSHVSRQISQLEKQMGVTLLMRTTRMLKLTDAGKTFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +  + ++   +   E      G+L+I      LG+ ++     +F+ L+P I I L
Sbjct: 70  QQCEKALNDIDQALLTAVEDIEVLQGELKINCVGGYLGEEVIAQVASDFMRLHPQITINL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  D  D A R+ K ++ +  I RKL+ I M   A+P YL         ++L
Sbjct: 130 DFSSHRVDLIEDEFDIAFRMGK-LEDAGFIARKLMNIEMGTLASPDYLARNESLSHPKQL 188

Query: 187 DKHNLIT 193
           + H  +T
Sbjct: 189 NSHQCLT 195


>gi|300312373|ref|YP_003776465.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075158|gb|ADJ64557.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 305

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 133/289 (46%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  + RS     AA++L +  S++SR++   E +VG +LF R+  G  LT  
Sbjct: 2   LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L     +V   L     EL   + K SG++R+  T   G  +L  ++  F    P I
Sbjct: 62  GYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++   + +++S   AD ++ + +P+ S + +  KL    +  YA+  YL       +
Sbjct: 122 TVDMLPMPRFVNLSKHEADISVSIERPL-SGNYVVTKLSDYVLKLYASRDYLAQHPPIHT 180

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +L +H+ I +  DL+    E+  +  TV            +  S ++       G  +
Sbjct: 181 MDDLAQHHFIGYIDDLV--FSEELRYKDTV----APDAFRAFRSTSVVAQYTAACAGRAL 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP ++ + +  L  ++   I  + + +       ++  ++ A  +++
Sbjct: 235 AILPCFLAQQSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYL 283


>gi|260769775|ref|ZP_05878708.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260615113|gb|EEX40299.1| transcriptional regulator [Vibrio furnissii CIP 102972]
          Length = 297

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 136/298 (45%), Gaps = 21/298 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA +G+FT AA+ L LS+  ++R +  +E  +  +L +R  R ++LT  G +  
Sbjct: 7   MRSFVEVANTGNFTKAADNLTLSRLQVTRHVQEIEDWLKQRLLHRTTRKVSLTAAGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +    +I   E S   +G +RI+  I L Q+LL   ++ F  L+P + I ++
Sbjct: 67  TRCEQILDQTAELEIRALEQSQSLTGSIRISAPIGLAQHLLLDTVEAFTELHPQVTIDIL 126

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++   +  D  D A+R  ++P    SLI R+L+ +     A+P YL+     +   +L
Sbjct: 127 ASDRLSQLVDDRVDVALRFTQQP--DESLIARRLIQVDTVVCASPQYLQTHDPIIEPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
            +HN           + +  W    D      R+S     + + I++   L   G+  LP
Sbjct: 185 SRHNCFVH-------LTNHTWDLVRDNQHFSVRVSGTVRANDMEILRSAALHHKGVVWLP 237

Query: 246 DYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +   NP      LV+++ D  +PS  ++  Y   L  + +    R FI   A  W+
Sbjct: 238 CDLA--NPCLRRGELVKVLADYHSPSSHLWAVY---LSRSYQTPLVRQFIDFVAERWQ 290


>gi|83310370|ref|YP_420634.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82945211|dbj|BAE50075.1| Transcriptional regulator [Magnetospirillum magneticum AMB-1]
          Length = 301

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 19/292 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  +   GS   AA +L  S  +I+R ++GLE  +G++L  R  R L  T+ G  
Sbjct: 5   DELAIFIAILEVGSLAGAARRLRRSPPAITRCLAGLEDRLGVRLVERTTRRLAPTDAG-- 62

Query: 66  LHRVTSEVYHKLETTQIELQESSV-KP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             R   +  H L      L+ +   +P  G+LR+   +  G+  +   + +FL  YP I 
Sbjct: 63  -RRFAEQARHLLSGYNEALRSAGADEPLRGRLRVTAPVVFGRRHVTPIIVDFLRAYPQIS 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+ +  + ++D+  +  D A+R+   +  S+L+ R++  +     A+P Y+     PL++
Sbjct: 122 IEAVFSDNNLDLIEEELDVAVRI-GTLADSTLVARRVGEVESVLVASPGYIAAHGLPLAV 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL +H++I F    P  +E        +R +   PR+   QV + L+  +    G GIA
Sbjct: 181 DELAEHDVI-FTSGRPVLVEWRLIEGGRERNVRLTPRLMVNQVEASLAAARA---GLGIA 236

Query: 243 LLPDYIVKDN---PNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               Y V D+    +LVR++     + P   V+   P       + +AF NF
Sbjct: 237 RALSYQVVDDLAAGHLVRVLPGSGALQP---VHLVVPGGRHMAARTRAFLNF 285


>gi|254506708|ref|ZP_05118848.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219550289|gb|EED27274.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 296

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 141/301 (46%), Gaps = 30/301 (9%)

Query: 6   DKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL   +V   VA++ SFT  AE+L +S+  ++R +   E  +G +L  R  R ++LT  
Sbjct: 2   DKLTAAKVMLDVAQTESFTATAERLEMSRPMVTRYVEAAENWLGARLLQRTTRKVSLTSA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L      + H +E  Q +  E S+ P+    G +R++ ++  G + L   L+ F   
Sbjct: 62  GEQL---LPNLQHWVE--QAQQMEESLMPTQAITGYVRLSVSMSFGFSQLMPALQAFRQR 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP I++ +   ++ +D+  +  D AIR      + +LI R     +    AAP YL  C 
Sbjct: 117 YPGIKLDIDAQDRAVDMVAERIDLAIRTTNE-PNPALIGRPFSVCYSKLVAAPEYLA-CH 174

Query: 179 EPLS-IQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQ 233
           +P++  Q+L +H  +    FG  I        W  T      +  +SC +  N    ++ 
Sbjct: 175 DPITHPQDLTRHACLGYKNFGRQI--------WQLTQGEQQHDVEVSCDVTANEATVLLH 226

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GI++ PDY+ +   D   LV ++ +    +  +Y  YP     +  ++A  +FI
Sbjct: 227 GSLAGLGISMQPDYLAQEWIDQGKLVWVLPEWQLMTLQMYLLYPSRKHLSPPVRALIDFI 286

Query: 291 F 291
            
Sbjct: 287 I 287


>gi|254507907|ref|ZP_05120036.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219549143|gb|EED26139.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 299

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 127/288 (44%), Gaps = 18/288 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVEMGSFSKVAETNNLTNSVVSKRIARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V          +       SG ++++     G  +L   + EF   +P + + 
Sbjct: 64  LTHGAKNVKQATLEAMDAVSGFGENISGHIKMSVPTISGDLILADAVAEFCNTHPGLSVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYVARNSKPVKPED 182

Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L +HN + +        E      + N++  V              ++  ++ +  + G 
Sbjct: 183 LTQHNCLQYAYQTTGASEWEFKGKEGNYIVRVS--------GSFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           GIA +P  +V     N  LV +  + +     +Y  YP   +   K+K
Sbjct: 235 GIAYVPRCLVYHDIRNGQLVDLFPEQVGKRLGIYAVYPFTRQPPNKVK 282


>gi|326573295|gb|EGE23263.1| LysR family transcriptional regulator [Moraxella catarrhalis
           101P30B1]
          Length = 287

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 19/243 (7%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D LR   VF  V R GSF+ AA++L ++ S++S+QI  LE ++G+ L +R  R L+LTE 
Sbjct: 3   DNLRGMAVFSSVVRHGSFSGAAKELGITTSAVSQQIRSLENDLGVSLLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+   +++    E  +  + +   + SG LRIATT +L +  L   L ++L+ + ++
Sbjct: 63  GESLYSSATQMVKAAEQGRDSVIQLKDELSGSLRIATTPELAKAYLLPALSDWLVEHDNL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  I+   ++D+  D  D A+ L +  Q  +     L T+     A+P Y+KN  +  +
Sbjct: 123 SLN-IISRDNLDMIEDRVDVALLLSEQAQGIA-----LKTVEQMLIASPEYIKNHGDVEN 176

Query: 183 IQELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           ++ L  H +I  G+   + +E  D N   +V       R+S  +  N++   +     G 
Sbjct: 177 VKALATHTMIICGEKPSESIEFKDANGKQSV-------RVSSRIITNNHAIALNLAAEGY 229

Query: 240 GIA 242
           GIA
Sbjct: 230 GIA 232


>gi|227328279|ref|ZP_03832303.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 304

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 2/184 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +GS   AA    +S +++S+ +S LET +G++L  R  R +TLTE G +     
Sbjct: 14  FIRVVENGSIAAAARAKGMSPAAVSQSLSRLETHLGVRLISRTTRSMTLTENGKRYFEKV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             + H +E    +   S  K  G L IATT   G+ ++   +  F   +PDI I+LI  +
Sbjct: 74  RHIPHDIELAS-QAAASETKLQGPLCIATTAAFGRYVIAPLMPAFKASFPDIDIELISTD 132

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           ++++  ++  D +IR+   + +  LI RK+ +I     AA  YL     P + +EL +H 
Sbjct: 133 RNVNHRLEGVDVSIRIEAQL-NDQLIARKIASIPFIFCAAQTYLDRAGTPQTPEELSQHA 191

Query: 191 LITF 194
            + F
Sbjct: 192 CLVF 195


>gi|163801378|ref|ZP_02195277.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
 gi|159174867|gb|EDP59667.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
          Length = 309

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 2/190 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G+ 
Sbjct: 5   NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGAL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T +    L+    ++  +  + SG L I    D G+N+L   L EF+ +YP++ I+
Sbjct: 65  FLDKTIQALATLQEGLDQISSARGELSGPLHITAPSDFGRNMLLNWLDEFIDIYPNVSIK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQ 184
           L L +   D+     D AIR  +P   S+L+   L + +     A+P Y+ +  E     
Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEP-ADSNLVTLALCSANERILCASPEYVADNPELTKPD 183

Query: 185 ELDKHNLITF 194
           +L++HN + +
Sbjct: 184 DLNQHNCLCY 193


>gi|311105892|ref|YP_003978745.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760581|gb|ADP16030.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           82 [Achromobacter xylosoxidans A8]
          Length = 307

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 113/251 (45%), Gaps = 29/251 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA++ SF+ AA  L + +S++SRQ++ LE  VG++L  R  R + LT+ G    
Sbjct: 7   MELFVEVAKTRSFSRAAVILGIPKSTLSRQVAELERSVGLRLLSRTTRKVELTDAGRLYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +    ELQ+    P+G LR+    D G + L  +  EF   YPD+   L 
Sbjct: 67  ERCQRIVAEAQIAHEELQKLVDTPAGPLRVNMPADFGTDFLAESFMEFSRRYPDVTFFLD 126

Query: 128 LDNKD--------IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           L N D         DIS++  +        +  SS I R L  +  H YA+  YL+   E
Sbjct: 127 LANPDHAQRVFQTCDISIEIGE--------LPDSSQIARLLGMLPAHLYASREYLEKHGE 178

Query: 180 PLSIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQ 233
           PL   +L +H  I F     G + P       W  T  R  I     +   VN      +
Sbjct: 179 PLHPSDLTRHECIEFRAKGAGQVTP-------WPLTDGRQHIEFTPGNRFSVNGVAMARR 231

Query: 234 YCVLGSGIALL 244
             +LG+GI +L
Sbjct: 232 LAILGAGIVVL 242


>gi|254420470|ref|ZP_05034194.1| hypothetical protein BBAL3_2780 [Brevundimonas sp. BAL3]
 gi|196186647|gb|EDX81623.1| hypothetical protein BBAL3_2780 [Brevundimonas sp. BAL3]
          Length = 298

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 125/291 (42%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +L  F  V    SF  AA +L +S S++SR I  LE  +G++L  R  R +  TE G
Sbjct: 5   EFAELTAFMAVFDDRSFRKAATRLGVSPSALSRTIRALEDRLGVRLLNRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L         +L++   E      +P G +R+       + +L     EF + YPDI+
Sbjct: 65  LALVDRMRPAMAELDSAVQEAGARQGQPRGLVRLNLPRIAARLILTPLFAEFFVAYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L++D+   D+     D  IR    +    +  R    + M   A+P Y      P + 
Sbjct: 125 FDLVIDDSLTDVVARGFDAGIRSGALVHQDMIALRLTPDLRMAVVASPDYFSRRPPPRTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +T+     +    + W+    D PI     + + VN    I+   + G G+A
Sbjct: 185 RDLHDHVGVTY--RWSETGALYRWVFEGPDGPIEMDIKNRITVNETDLILAAALEGVGVA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+  +        LVR++ED   P    +  YP   +    L+AF +F+
Sbjct: 243 FLPESFIAPWLQTGELVRVLEDWCKPFPGFHLYYPSRRQMPEALRAFIDFV 293


>gi|94313208|ref|YP_586417.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93357060|gb|ABF11148.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 288

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 139/291 (47%), Gaps = 8/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  + R  +   AA  L + Q+++ R+++ LE  +G  LF R + G  LT+ 
Sbjct: 1   MNWDDARIFVALYRERTLRAAARALDIDQATVGRRLAVLEHALGSTLFLRTSNGYELTQV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +           Q    + +G+++++TT  L Q  +   ++     +PD+
Sbjct: 61  GKLAIRAAEAMEQSAHDLVRHTQGMDKRLAGEVKLSTTDALAQEYVVPAIESLHAQHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L      ++++   AD A+R  KP ++  L+ R+L +  +  +A+P Y++   EP+ 
Sbjct: 121 SVVLDTTTHVLNLAKREADIAVRTVKP-RNPDLLARRLASWDVGLFASPAYIRRHGEPVP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +    H+L+ +     K        + +  P+ + RI+  ++N+ L++      G GI+
Sbjct: 180 GERFLGHDLVVYQPHFAKARAP----SFIGEPLTDGRIAA-RLNTNLTLRAALKAGLGIS 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
            +P   + +   LVRI  D  + + + V+    + L++T +++   + I L
Sbjct: 235 EIP-VPMGERDGLVRIWPDRTSGAPYEVWLVTHQDLRHTARVRVTIDEIVL 284


>gi|194367167|ref|YP_002029777.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349971|gb|ACF53094.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 294

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 124/296 (41%), Gaps = 25/296 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SF  A  +L LS S++S  I  LE  +G+ LF+R  R + LTE G +L 
Sbjct: 9   LAAFAAVARHRSFRRAGAELALSTSAVSYAIRALEERLGVGLFHRTTRSVALTEAGQRLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++     E+ +    P+G LRI  T       L   L  FL  +PDI+++L 
Sbjct: 69  ERLQPALGQVHDALEEMNQFRAAPAGLLRINATRAAVPTQLGPRLARFLHAHPDIRVELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHYLKNCREPL 181
            ++  +DI  +  D  +RL +       +   +V + M          AP YL+    P 
Sbjct: 129 ENDGLVDIVAEGYDAGVRLHE------FVPEDMVAVPMGPPLRGLIVGAPDYLRRHPAPR 182

Query: 182 SIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             ++L  H  I F    G L     E       +D P        L +    +++   + 
Sbjct: 183 HPRDLAAHECIRFRFASGHLYKWQFEREGQALEIDVP------GRLTLGEQGTVVSAVLD 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+A + +   +   D+  +V ++ED   P       YP+  +    L+AF + +
Sbjct: 237 GIGLAYVLEDTARPYIDSGQMVAVLEDWSEPFAGFALYYPKQRQMPAALRAFVDML 292


>gi|90409716|ref|ZP_01217733.1| Hypothetical transcription regulator [Photobacterium profundum
           3TCK]
 gi|90329069|gb|EAS45326.1| Hypothetical transcription regulator [Photobacterium profundum
           3TCK]
          Length = 312

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 143/304 (47%), Gaps = 23/304 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +K+  F  V ++GSF  AAE+  +S ++ SR I  LET + ++L  R  R L  T+ G  
Sbjct: 16  NKIAFFCSVIQNGSFREAAEEWGISAAAASRWIKELETLMAVELIKRSTRQLVPTDAGEL 75

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++  S +  +++T   E++  + +  G + I++T       L+  + E++ ++P +  +
Sbjct: 76  LYQRFSTLLPEIDTICSEVESMADEQRGVITISSTPLFASYYLREIIAEYMEMHPKVNFR 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS-----LIQRKLVTIHMHAYAAPHYLKNCREP 180
           L ++  + D    Y D  IR +   + +      LI+R L++  ++A AAP YL  C  P
Sbjct: 136 LFIEAGETDPL--YVDFIIRAKATNRETEEKDSLLIRRPLLSEPLYACAAPSYLARCGTP 193

Query: 181 LSIQELDKHNLITFGDLIPK-----CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           +  +EL  H  +    L+       C++  N   T+           L+ ++   +    
Sbjct: 194 VEPEELGDHRCLYASSLVGGNRWYFCLDGVNRAVTIS--------DALECDNSEILRDLA 245

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G+G+A LP  +++    +  L   + D +   F +   +      + + K F++++  
Sbjct: 246 IRGAGVAYLPYSVIRGALADGRLKVFLTDFVASRFDINLYFRPRHPMSVRCKTFKDYMLR 305

Query: 293 KARD 296
           + ++
Sbjct: 306 RTKE 309


>gi|71279969|ref|YP_268177.1| LysR family substrate binding transcriptional regulator [Colwellia
           psychrerythraea 34H]
 gi|71145709|gb|AAZ26182.1| substrate-binding transcriptional regulator, LysR family [Colwellia
           psychrerythraea 34H]
          Length = 308

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 122/250 (48%), Gaps = 18/250 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   G+F+ AA++L ++ S++SRQIS LE  +GIKL  R  R L LTE G    
Sbjct: 13  MAIFVTVIEQGNFSKAAKKLGVTPSAVSRQISRLEDALGIKLLQRTTRQLALTESGKLTF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +      + ++   SG LR++    L   +L+    EFL  YPDIQ+ L 
Sbjct: 73  DYCKQMVESADQAVNASRSATSTVSGLLRVSAPKSLANKVLRPLFVEFLKCYPDIQLHLK 132

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + ++ +D   D  D  I +   PI+  +L+  K+  +     A+P +L++   P    +L
Sbjct: 133 VTDRILDPIHDGVDFLIHINDYPIE--ALVNIKIGRVEQVLCASPEFLQSHTPPTHPDDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYL---SIMQYCVL--GSG 240
              + I  G+     M D  W     R I E + + +QV  SYL   S M+   +  G G
Sbjct: 191 KYLSCICLGE----NMVDNRW-----RFINENQQTTVQVAGSYLLNHSDMRRDAIEQGFG 241

Query: 241 IALLPDYIVK 250
           I  LPDYI +
Sbjct: 242 IGPLPDYIAQ 251


>gi|17548239|ref|NP_521579.1| transcriptional regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17430485|emb|CAD17169.1| probable transcriptional regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 302

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 21/251 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  WD +R F  +AR GS + AA +L +  ++++R+   LE  +G++LF R  RG  LT 
Sbjct: 13  SLQWDDVRHFLALAREGSLSAAARRLGVEHTTVARRADALEQALGVRLFDRLPRGWRLTA 72

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLL 118
           +G  L    +E   ++E     L   +       G +R++    L  +++  NL      
Sbjct: 73  EGGAL----AEQAGRMEQEAAGLARIAAGAGNLRGTVRVSAPPTLASHVIAPNLATLRRR 128

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P I + L+ + ++ ++    AD A+RL +P  S++L  R L  +    YA P  L    
Sbjct: 129 WPGIDLVLLGEKRNANLMAHEADLAVRLSRPT-SAALATRPLGDLGYGLYATPEVLTRPE 187

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                    +   I + D + + M    WLA      G  R+  L+ +   +I +  + G
Sbjct: 188 A--------EWEFIGYDDTL-RHMPQQRWLAAY---AGARRM-VLRCSDLAAIHRAALTG 234

Query: 239 SGIALLPDYIV 249
            G+A LP ++V
Sbjct: 235 LGVAALPHFLV 245


>gi|238754640|ref|ZP_04615993.1| HTH-type transcriptional activator aaeR [Yersinia ruckeri ATCC
           29473]
 gi|238707099|gb|EEP99463.1| HTH-type transcriptional activator aaeR [Yersinia ruckeri ATCC
           29473]
          Length = 303

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 94/202 (46%), Gaps = 17/202 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   RMSVFAKVVACGSFTAAARQLGISVSSISQTVSKLENELQVKLLNRSTRSIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + + L
Sbjct: 66  YQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKAYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P      
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GTLQDSGLFCRRLGSMPMVVCAAKSYLAQHGTPEK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWL 208
                       P  M +F+WL
Sbjct: 181 ------------PSDMVNFSWL 190


>gi|300312018|ref|YP_003776110.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300074803|gb|ADJ64202.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 2/189 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            ++  LRVF  + R+GSF  AA QL L+ S+ S  +  LE  +  +L YR +R ++ T  
Sbjct: 7   IEFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLATQLLYRSSRAISPTAA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+L     + + ++     +L  S+    G+LRI    D    L++  + EF+   P +
Sbjct: 67  GSELAARLEQGFEQIGAALSQLDSSAAGSLGELRINVFADAAHLLIEPAIPEFVRQCPKV 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPL 181
           ++ +++D+K IDI  +  D  IR    +    ++   L   H   A AAP YL     PL
Sbjct: 127 RLTIVVDDKPIDIVSEGYDAGIRYGHYV-PEGMVTAPLTRAHRWVAAAAPAYLDRHGRPL 185

Query: 182 SIQELDKHN 190
           ++Q+L +H 
Sbjct: 186 TLQDLQQHT 194


>gi|94312980|ref|YP_586189.1| putative LysR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93356832|gb|ABF10920.1| putative transcriptional regulator, LysR family [Cupriavidus
           metallidurans CH34]
          Length = 300

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 133/285 (46%), Gaps = 13/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  +G FT AA +L +S S +SR I+ LET +G++L  R  R +  T  G+  +
Sbjct: 7   MKTFVTVVDTGGFTPAARKLDVSLSVVSRVITELETHLGVRLLTRTTRLVRPTATGATYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  ++    +   P GKL I  ++  G+  +   + E+L  YP++  + +
Sbjct: 67  ENCRRILAEIEEAELATTGAHAAPRGKLSITASVLFGRRFVTPIVVEYLRRYPEVDAECL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +++++   +  D  +R+  P+ SSSL    +  +     AAP YL     P +  +L 
Sbjct: 127 LIDRNVNFVEEGIDVGVRI-GPLPSSSLQAIPVGRVRRVVCAAPDYLARFGTPATPDDLA 185

Query: 188 KHNLI-TFG-DLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
            H +I T G   +P+      W    D      R++  L  ++  S +   V G G+A +
Sbjct: 186 HHTVIQTTGISTLPE------WRFMRDGETAPTRLTPRLATSTNDSAIGAAVAGFGLAAV 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             Y + D   +  L  ++++   P   ++  + E      K++AF
Sbjct: 240 LSYQIADEVRDGKLRIVLDNFEQPPLPIHVIHREGRHAMHKVRAF 284


>gi|260899478|ref|ZP_05907873.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308109207|gb|EFO46747.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
          Length = 293

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 135/274 (49%), Gaps = 11/274 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F  V + GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT +G  
Sbjct: 4   DDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNKGDA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   +V   L++   +    S++  GK+++    +  ++ LQ  L EF   YP +++ 
Sbjct: 64  YYQDLQKVLTLLDSANQQASNESIEVKGKIKLGLLPETYEH-LQPILFEFQDQYPQVELD 122

Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++N  ID+     D A+     +  S ++ RK++T+     A+P+YL+    P +++
Sbjct: 123 IRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPATLE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H  I F    P    D  W         +P++     N+   I    VL  GI+ +
Sbjct: 182 ALSDHQCICFR--WPNGNVDNLWHFQEQNVALKPKLIS---NNIGFIKSSTVLDRGISYI 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           P  +VK   ++  LV+++        T +  YP+
Sbjct: 237 PKLLVKNELESGALVQVLSQYAVTEETGWLLYPQ 270


>gi|238762596|ref|ZP_04623566.1| LysR-family transcriptional regulator [Yersinia kristensenii ATCC
           33638]
 gi|238699241|gb|EEP91988.1| LysR-family transcriptional regulator [Yersinia kristensenii ATCC
           33638]
          Length = 306

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 1/193 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + LRVF  VA  GSF   A+ L +  S++SR IS LE  + ++L  R  R + LT 
Sbjct: 4   NMDLNTLRVFTAVAEKGSFVGGAKALEMPTSNVSRCISQLEERLNLQLIERSTRHMKLTP 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  L    + EF L +P+
Sbjct: 64  AGQLLYTRVKPLLESLEQTEAELTSQQIQIKGPLRICIPNEIGPALFGTLIAEFALQHPE 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+I  + +   ++   D  D AI + R  +  S  I R L T      AAP  L    +P
Sbjct: 124 IEISCVTNLSGLESLRDDLDLAIIITRGQLDDSDYIARHLATFPCSVVAAPAVLARFGKP 183

Query: 181 LSIQELDKHNLIT 193
             I++      IT
Sbjct: 184 TRIEQFATLPCIT 196


>gi|27367830|ref|NP_763357.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37675958|ref|NP_936354.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|27359403|gb|AAO08347.1|AE016813_99 Transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37200498|dbj|BAC96324.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 303

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA++L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LASFILVVNEGSFTAAAKKLDVTPSALSKLITRLEQALQVKLFERTTRKLLITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 73  DQSIAMVNAAQQA-IEISASDHSEPAGALTVAAPEAFLNSVLQPFVVPFLQQYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + +ID+  D  D A +L  KP    +L+ ++L   H+   A+P YL     P    E
Sbjct: 132 RAADGEIDLFRDNIDVAFKLTDKP--DENLVLKELSKTHLVLCASPDYLAQRGMPTHPTE 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +      +D  W    D       +S    VN     +     G GI + 
Sbjct: 190 LTEHDCLYLAE----NDKDNLWSFFKDEAFYSVAVSGRYAVNHSQMRLNGVKQGLGIGIF 245

Query: 245 PDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
            D++++D      +V++++D +  S     +   YP+      +L+ F +FI
Sbjct: 246 HDFVIRDALERGEVVKVLDDWMIKSNYHGAIAMQYPQTKYMPARLRVFIDFI 297


>gi|312961144|ref|ZP_07775649.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311284802|gb|EFQ63378.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 305

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AA+ L L ++S++  I  LE  +G++L  R  R +  T  G+
Sbjct: 4   FNAMRVFTRIVELGGFAKAADSLQLPRASVTVLIKQLEAHLGVQLLQRTTRQVNPTLDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++   LE T+     S   P G L I     +G+ L+   L  F   YP I++
Sbjct: 64  AYYQRCVQLLTDLEETEAVFSTSRRNPRGTLSIDMPSGIGRFLVIPALPTFTARYPQIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L+++ +D+  +  DC +R    +   SL+ R L  +     A+P YL+    P ++ 
Sbjct: 124 EIGLNDRPVDLIREGVDCVLRGGLAL-DESLVARPLAMMDQLTLASPDYLERMGTPATLD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H+++ +   +        + LA   R I    R++   VNS    +  C  G G+ 
Sbjct: 183 DLAGHSMVEYVSTVSGKRFGLEFQLAGELRAINLAKRVA---VNSSDGYLAACQAGYGLI 239

Query: 243 LLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P Y  +++     LV ++  +  P   +   YP   + + +++ F +++
Sbjct: 240 QAPYYHAIQELAQGTLVEVLPQLAVPKMALTALYPPHRQLSQRVRVFVDWL 290


>gi|300698064|ref|YP_003748725.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074788|emb|CBJ54353.1| putative transcription regulator, LysR family; putative ttuA
           activator [Ralstonia solanacearum CFBP2957]
          Length = 309

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 140/294 (47%), Gaps = 16/294 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A +GS + AA  L ++  ++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 10  ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++     L ++  +PSG LR+  T+  G+  +   + E++  YPD+ +QL
Sbjct: 70  LERARRILGEIDDLDQLLTQAKGRPSGLLRVNATLGFGRMHIAPAISEYVRAYPDVDVQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  +R  +P   + +I RK+        A+P YL+    P +  EL
Sbjct: 130 QLSADPPPLNEDLFDVCVRFGEP-PDARIIARKVAPNRRLLCASPAYLQQHGVPQTPAEL 188

Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239
            +HN I     I +  + +  W  T  +   + R   + V   L+       + + + G 
Sbjct: 189 ARHNCIG----IRQGSDAYGVWRLTSGKG-AKARTETVHVRGNLTTNDGEIAVNWALEGH 243

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  ++ ++   ++  LV+++    TP   +Y  Y +  + + +++ F +++
Sbjct: 244 GIVMRAEWDIERYLNSGRLVQVLPHYATPEADIYAVYHQRHQLSSRIRLFVDYL 297


>gi|182679698|ref|YP_001833844.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635581|gb|ACB96355.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 311

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 23/299 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA +GSF+ AA  L L+Q ++SRQ+S LE  +  +L +R    L LT +G ++ 
Sbjct: 7   LRTFLRVAETGSFSAAAVDLKLTQPAVSRQVSALEAHLDTRLLHRSTTALALTSEGERMI 66

Query: 68  RVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +  +V   +E     L ES+ +    SG++R++    LG   +   L   L  +P + +
Sbjct: 67  PMALKVIEAVEA----LGESAGQVGTASGEVRLSVPAPLGL-YMSDRLAALLDHHPQLSV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+   +  D+     D  +RL   I  SSLI R++        A P YL+    P +++
Sbjct: 122 ELLFREEPSDLVGQGIDLEVRLGN-IADSSLICRRIGWTTAFLVATPAYLEKRGTPRALE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ I +     +  +  +WL +        RI+  L VN+ +++ +  + G+GIA+
Sbjct: 181 DLSHHDCICYK----RGGDSRSWLFSNGADEVAVRIAPRLIVNNAVAVHRAVLAGAGIAI 236

Query: 244 L------PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L      PD    +   L+ ++ D       +   YP       +++A  +++    R+
Sbjct: 237 LSHILAVPDI---ETGRLISLIPDFPPARLPITLAYPSRRNMPFRVRAVIDYLVAAMRE 292


>gi|222109829|ref|YP_002552093.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221729273|gb|ACM32093.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 336

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 14/242 (5%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  VAR  +F  AAE+L L+QS++SRQI  LE EVG+ LF RH R + LT  G +L R
Sbjct: 27  RAFLAVARHLNFRAAAEELALTQSAVSRQIQALEDEVGVPLFLRHTRAVELTSAGGQLQR 86

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +    +++     +++++ + S  + I T        L   ++EF    PDI I++  
Sbjct: 87  AVAPALERMDAAVRLVRQTAGRKS--VAITTWASFASMWLIPRMEEFQRDNPDIDIRIDA 144

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELD 187
            +  +D+     D A+R   P   ++  QR L    +   A+P +L N   P+ +  ++ 
Sbjct: 145 TDTIVDLETADVDLALRSSVPGTQAAGAQR-LFGEQLAVVASP-WLLNSMPPIRTPADVA 202

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGI 241
           +  LI  GD     M  F W+ T  R      +  LQ   +L       I+Q  + G G+
Sbjct: 203 QFTLIEAGDA--HRMPYFEWI-TWRRWFELHALGRLQPKRWLYFNYAQQIVQAALAGQGL 259

Query: 242 AL 243
           AL
Sbjct: 260 AL 261


>gi|91226411|ref|ZP_01261210.1| substrate-binding transcriptional regulator, LysR family protein
           [Vibrio alginolyticus 12G01]
 gi|91189225|gb|EAS75505.1| substrate-binding transcriptional regulator, LysR family protein
           [Vibrio alginolyticus 12G01]
          Length = 291

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 140/296 (47%), Gaps = 29/296 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +KL +F  VA++ +F+ AAEQL +S+S +S QI  LE+E+   L  R  R + LT +G  
Sbjct: 8   EKLMLFAEVAQTLNFSRAAEQLGISKSYLSEQIKRLESELATPLIVRTTRSVRLTAEGES 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++  ++   +  L + S +  G +R+       + +L      F  L+P+++ +
Sbjct: 68  IFAQAEDLKRRVMEMEKSLSQRSEQIDGLIRLTAPKMFAEAVLHDLCVAFRALHPNVEFE 127

Query: 126 LILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +  +++    D A R  R P +  ++I   L+  H    A+P YL+    P ++ 
Sbjct: 128 ILSSYQAFNLTETSVDFAFRATRTPPE--NMIAHHLLDYHHWLVASPQYLQEEGTPETLD 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238
           +L +H  +T        +    W      P+   +   +Q   +LS      + +  + G
Sbjct: 186 DLQEHQCLT-------TLHQKEW------PL---KTGTVQTQGWLSSNENRLLKESALSG 229

Query: 239 SGIALLPDYIVK---DNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L  Y V+   ++  LV+++ E+       VY  YP+ +  + K +AF  F+
Sbjct: 230 NGIARLASYFVEQDVEHGRLVQVLSEETDHQHNAVYLVYPQLISQSAKTRAFIEFV 285


>gi|254251650|ref|ZP_04944968.1| LysR [Burkholderia dolosa AUO158]
 gi|124894259|gb|EAY68139.1| LysR [Burkholderia dolosa AUO158]
          Length = 309

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 126/286 (44%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT  G+ 
Sbjct: 5   DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETGLGTRLLHRTTRQVQLTADGTL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +      +       G+L +     + + ++   L      YP +Q+ 
Sbjct: 65  LVERGRRLLAEADELDRLFRRRGRDVVGRLNVDVPSRIARRVIAPALPALFRRYPKLQLA 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P     
Sbjct: 125 LGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGHFELINCASPDYLRECGVPEHPDA 183

Query: 186 L-DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L + H  I +    P      +W   VD      P  S + VN+  + +  C+ G G+  
Sbjct: 184 LANGHRAIGYAS--PTTGRALDWEYCVDGARHALPLPSRVIVNNAETYIASCIAGMGLIQ 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +P + V    D+  LV +M         V   YP     + +L AF
Sbjct: 242 IPRFDVAHLLDSGALVEVMPRYRAAPMDVSAVYPHRRHRSRRLNAF 287


>gi|157157918|ref|YP_001462100.1| LysR family transcriptional regulator [Escherichia coli E24377A]
 gi|193064642|ref|ZP_03045721.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194428345|ref|ZP_03060886.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|260843150|ref|YP_003220928.1| putative transcriptional regulator, LYSR-type [Escherichia coli
           O103:H2 str. 12009]
 gi|300926539|ref|ZP_07142328.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|301325776|ref|ZP_07219224.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|157079948|gb|ABV19656.1| transcriptional regulator, LysR family [Escherichia coli E24377A]
 gi|192927699|gb|EDV82314.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194413560|gb|EDX29841.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|257758297|dbj|BAI29794.1| putative transcriptional regulator, LYSR-type [Escherichia coli
           O103:H2 str. 12009]
 gi|300417456|gb|EFK00767.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300847419|gb|EFK75179.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|323159526|gb|EFZ45506.1| hypothetical protein ECE128010_4142 [Escherichia coli E128010]
          Length = 302

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 133/299 (44%), Gaps = 20/299 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +         A P Y 
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               +P    +L  H  + F    P   + F+W    +  I       + ++   + ++ 
Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++G+GI  L    +K   D   L  ++ED  T        YP     +  L+AF +++
Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERSGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|149187187|ref|ZP_01865485.1| Transcriptional regulator [Vibrio shilonii AK1]
 gi|148838723|gb|EDL55662.1| Transcriptional regulator [Vibrio shilonii AK1]
          Length = 297

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F +VA  G+FT AAE L++S+S +SRQI  LE ++G+ L  R  R + LTE G    
Sbjct: 11  VRAFVLVANLGNFTKAAEALNVSRSHVSRQIQSLEKQMGVSLLIRTTRTMKLTEAGKAFL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                    ++       +   +  G ++I      +G+ L+   L +FLL YP++ I+L
Sbjct: 71  SSCDGALQSIDQAVHAAIDDVEEVRGSIKINCVGGYIGEELVANYLSQFLLNYPEVNIEL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D AIR+   +  S+ I R L  I M   A+P YL    +    +EL
Sbjct: 131 DFSSHRVDLLEEEFDLAIRM-GVLPDSNYIARHLTNIEMQTLASPDYLAKYPKLTHPKEL 189

Query: 187 DKHNLIT 193
            +H  IT
Sbjct: 190 KQHKCIT 196


>gi|99082439|ref|YP_614593.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038719|gb|ABF65331.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 292

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 135/295 (45%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AA+ L +  +++ R I  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARLGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+    + SG+L + T++     +L   L EF  L+PD+ 
Sbjct: 63  LDLLRVAQATDDQFSQLVGRLKGQGDEVSGEL-VVTSLSSMAPMLAPALAEFQQLHPDLV 121

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I+ +  ++   +    A  A+R    P Q  +++Q   V   +  YA+  Y++       
Sbjct: 122 IRYLTGDRLFRLEYGEAHVALRAGAAPEQPDNVVQ-PFVAQRLALYASREYVERHGMLKG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             ++  H  I   +   +   +  WL +    I    I   + +  ++  Q    G+GI 
Sbjct: 181 QDDMVNHRFIASDNENTRAPFE-RWLRST---IPAENI-VFRCSDAVAGHQAIRAGAGIG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            +  +    +P+LV +M+     S  ++      L  T K+++F  F+   A+ W
Sbjct: 236 FVSLWEAASSPDLVMMMDPHDEWSGKIWLVTHVDLHRTNKVQSFVRFLKEHAKSW 290


>gi|329297747|ref|ZP_08255083.1| LysR family transcriptional regulator [Plautia stali symbiont]
          Length = 307

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 119/247 (48%), Gaps = 9/247 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+A  GSFT AAE+L +S++++S++I  LE   G+ L +R  R + LT  G 
Sbjct: 10  WVHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKELEQMAGVALVHRTTRSVRLTSAGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL     E + ++  +   +++ +      +RI+  +   +  L   + +FL  YP +++
Sbjct: 70  KLVDDLREPFARIAQSFFSVRDEAGPVRSLVRISAPVAFARQQLVPIIGDFLRDYPQVRL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L ++ + +  +  D AIR  + +  +  +   L        A+P YL     P + Q
Sbjct: 130 QLNLSDRLVSLGSEGFDLAIRHSQQLPETH-VALPLCETRTLLVASPDYLTRHGMPHTPQ 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
            L +HN + +    P+ +E   W   L + D    + +I      N+  SI    + G G
Sbjct: 189 ALQQHNCLYY----PRALESPQWRFRLHSDDSETVQVKIQGNFATNNSESIRDAVLQGLG 244

Query: 241 IALLPDY 247
           IA+LPD+
Sbjct: 245 IAMLPDF 251


>gi|298717563|ref|YP_003730205.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361752|gb|ADI78533.1| Uncharacterized HTH-type transcriptional regulator yhjC [Pantoea
           vagans C9-1]
          Length = 301

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 8/279 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      ++ F  VA +GSF+ AA Q  + QS++S+QI+ LE  +G+ L +R  R + LT
Sbjct: 1   MQNKLTAIQTFIRVAEAGSFSAAARQNGMKQSAVSQQIAALEEVLGVVLLHRTTRKMALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            QG    +   +V   +E  + +L+  S    G+L +     +GQ L+  +L  F   +P
Sbjct: 61  AQGLHYLQQVRQVLGAMEELEQQLRPGSQPLHGRLHVQLPTGIGQRLMP-HLIAFQQAHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + L+++  D+  +  D AIRL +    + L  R L T+     A+P ++      
Sbjct: 120 ALRLNIALEDRLSDLVAEGVDVAIRLSES-PPAMLAARSLATVETVLVASPEWIARNGTL 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +H  I F  +     +    L +    I  P  S  + N+  ++MQ    G G
Sbjct: 179 QTPDDLMRHPHIRFSGI---ATDAPLQLVSESMRISVPVESVFRSNNSDALMQALEAGLG 235

Query: 241 IA---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEA 276
           I     LP      +  LVR++ D   P   +Y  +P+A
Sbjct: 236 IGGLQTLPGADALASGRLVRVLPDWRLPDRYLYAVFPDA 274


>gi|240137786|ref|YP_002962258.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
 gi|240007755|gb|ACS38981.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
          Length = 314

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 136/302 (45%), Gaps = 13/302 (4%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L      ARS   GS+T AA  L +S S++S+ +  LE  +G+ LF R  R LTLT +
Sbjct: 7   DRLTGIIAFARSASLGSYTAAAHSLGISPSAVSKSVQRLEQRLGLSLFTRTTRALTLTPE 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  LH     + H+ E  +     +  +P+G L++     +G ++L   L  F   YP +
Sbjct: 67  GRDLHERALRLLHEAEEIEQAAVAARSEPAGTLKVTAPFPIGVHVLAPALPRFRERYPKL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L ++  D+  +  D AIR+ + +  S LI R+L    +  +A+P YL+    P  
Sbjct: 127 SIDLRLGDRFADLIEEGIDVAIRVGE-LADSQLITRRLAPHWLCTFASPAYLERRGTPRH 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L +H  + F        +   W   +  R +     + +  +   ++    V G GI
Sbjct: 186 PDDLIQHECVNF--RFQSTGQALRWPFRIGGRTVEITPQAGITTDFSDAVAAIVVAGGGI 243

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKAR 295
            + P Y+         LV ++ +       +   +PE+ +++  +KA   F   +F  A 
Sbjct: 244 GISPTYVAAPYVARGVLVPVLREFAVERSAIVALWPESRRSSPNVKALLAFLEEVFPAAP 303

Query: 296 DW 297
            W
Sbjct: 304 GW 305


>gi|226305456|ref|YP_002765416.1| LysR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226184573|dbj|BAH32677.1| putative LysR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 304

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 26/255 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +LRV   VA+ GS T AA+ L  +Q SIS  +  LE+EVG+ LF R  RGL LT+ 
Sbjct: 2   LDLIRLRVLVAVAQEGSVTAAADSLGYAQPSISHHLRQLESEVGVPLFQRAGRGLRLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L R  +E+   ++    E++  +   +G++R+A       +L+   +  F   YPD+
Sbjct: 62  GAVLVRRATEILGHVDAAVAEVETYAGLRAGRVRLAAFPSALASLIPQAMAAFTSQYPDV 121

Query: 123 QIQLI----------LDNKDIDISM--DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
            I L+          L N D+D+++   +AD      K +  ++L+   L          
Sbjct: 122 SISLVDAEPPKALAMLRNNDVDVAVVFAHADTPDVGLKHVTLTTLLDDPL---------- 171

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
            + + + R   +  E+  +   T+    P C    + L   +R    PRI   + + Y++
Sbjct: 172 -YLITSARNADAANEITDYAGETWIAGCPSCRA--HLLTACNRAGFVPRIE-FETDDYVA 227

Query: 231 IMQYCVLGSGIALLP 245
           +      GSG++ LP
Sbjct: 228 VQALVASGSGVSTLP 242


>gi|71278365|ref|YP_267683.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144105|gb|AAZ24578.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 298

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 15/302 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+  +++L+   VF  V   G+ + AA+ + LS++ +S  I  LE ++GIKL  R  R +
Sbjct: 1   MNISFEQLKSMVVFAQVIEQGTLSGAAKHIGLSRAVVSYHIKKLEAQLGIKLLNRSTRTI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           + TE G + ++    +  +      +++    +P G L+I   +++G   +   L EF  
Sbjct: 61  SATEAGLEYYQYCRVIAEQASAANRQIENLKHEPVGLLKITCPVNVGLQTIVPALNEFRT 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +YP I++ ++L ++ ++I  +  D AIR   P+  S L   KL T+      +P Y +  
Sbjct: 121 IYPKIELDVMLTDEVVNIIKEGIDLAIR-GAPLADSGLQAAKLSTLSTCLCGSPAYFEKF 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P    EL+KH  + +  L    +E    L    R         +  N+  +   +   
Sbjct: 180 GFPKHPTELNKHQWVLY-KLTAGSLE----LTKGSRSFSIEMKGTISTNNAAARTAFVEG 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---F 291
           G G+  +P Y  K       L+ +++D       VY  +P     + KL+   +F+   F
Sbjct: 235 GHGLGRIPVYDAKPRIKAGQLLSVLDDYDMRDIHVYGVFPPGNAESKKLRLLIDFLKAYF 294

Query: 292 LK 293
           LK
Sbjct: 295 LK 296


>gi|52425744|ref|YP_088881.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307796|gb|AAU38296.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 299

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 139/294 (47%), Gaps = 14/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L  F+ +   GS   AA +L ++  ++S  +  LE  +G+ LF R  R + LTE G 
Sbjct: 6   YGYLTYFHEIVIEGSIAGAARKLEVAPPAVSNALKLLERHLGLPLFTRTTRKMELTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T ++   L++    +++ + KPSG +RI T+I     +++ +  EF   YPDI++
Sbjct: 66  RLFESTKDMLRGLDSVMESVRDLTEKPSGLVRITTSIISYLLVIRPHFAEFCERYPDIRL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +++  +DI  +  D  +R    ++ + + ++ L  + +  YA+  YL+   +P +++
Sbjct: 126 EISVNDGIVDIVKEGFDVGMRFGDRLEQNVVAKKLLDPVRLGLYASESYLRKYGKPETLE 185

Query: 185 ELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L +H L     +T     P          ++D P        +  N+    +     G 
Sbjct: 186 DLSQHKLLGYRFVTANRTYPLTFNQDGREISIDMPY------SVLTNNLTVELDTVRQGV 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  L + +V    D  N + +++   T    +Y  Y +  +  GK++A  +F+
Sbjct: 240 ALGQLFEPVVNALHDRKNFIPVLDAHWTQYPALYLFYMQHSQKAGKVRALIDFL 293


>gi|54296319|ref|YP_122688.1| hypothetical protein lpp0348 [Legionella pneumophila str. Paris]
 gi|53750104|emb|CAH11496.1| hypothetical protein lpp0348 [Legionella pneumophila str. Paris]
          Length = 289

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 16/291 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  V     F  AA +  +S +++SRQI+ LE E+  +L  R  R L+LTE G+
Sbjct: 4   FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQITRLEAELKAELLVRTTRKLSLTEIGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   +   +L   +I +  S  +  G L + ++       L   L EF+ L P +QI
Sbjct: 64  RYYQQCKKTLLELNEAEIAIASSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123

Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  +  D++ +  D    + +  P     L+++++ T      A+P YL     P +
Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGP---PELVRKRVSTTRYVLCASPDYLAENGIPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL KH  IT     P  +  F N      +P+       L +N   ++ +  +LG GI
Sbjct: 181 PSELGKHRYITHSMRNPDNLVTFKNNEQIYVKPV-------LWLNDSRALCECALLGMGI 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             L +YIV +   +  L+ ++ +    S +VY  Y  +     K++ F +F
Sbjct: 234 IKLHEYIVAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284


>gi|90423499|ref|YP_531869.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105513|gb|ABD87550.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 300

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 133/298 (44%), Gaps = 14/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA   SFT AA QL LS  ++S  +  LE  + ++LF R  R + LTE G +L
Sbjct: 8   ELAAFVAVADHLSFTRAAHQLGLSLPTVSLTVKALEDRLDVRLFNRTTRSVALTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   ++     +     KP G LR+A +      +L   +K FL  YP+I++ L
Sbjct: 68  LAEIQPLLQGVDDAIESVNRYRDKPIGTLRLAVSRTFATRVLAQLIKPFLDEYPEIRLDL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D+ +IDI     D  IR+   ++    +        +   A+P YL     P+  ++L
Sbjct: 128 EIDDTNIDIVRHRFDAGIRVGDMVERDMKVISVFDPFRLIVVASPVYLAGKPAPVRPEDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             HN I +   +P       W+  V+R   +  I+    L VN +  +M   + G G+A 
Sbjct: 188 RGHNCIRYR--LPHDGSIQRWI--VERSGRQTEIAVEGSLIVNDFDLMMGAALDGVGVAY 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           L + +++    +  L+R++         +Y  +P   +    L  F  FI    ++W+
Sbjct: 244 LSEPLIQGALADRKLIRVLPGWGHTLQGIYLYHPSRRQVPMPLLVFLRFI----KEWR 297


>gi|152981649|ref|YP_001353360.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281726|gb|ABR90136.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 316

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 15/289 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH--- 67
           F ++ R+GS   A  +  + +++ISRQI+ LE  +G++LF R  R +  TE G+  +   
Sbjct: 10  FVLLMRNGSLGRAENEGGIPKTTISRQIAKLEEILGVQLFLRSTRRIAPTEAGTAFYAHC 69

Query: 68  -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R+ +++   L T Q ++Q  S    G L + T   L  + +   L  +L  YP +   L
Sbjct: 70  ERIIADLNAGLATAQTDVQNLSEGLRGDLYLLTNNHLSTSFVSRVLGLYLDSYPGVTCHL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  ++I    D  DC +   +P    +L+ + L  +    YA+P YL+    P   ++L
Sbjct: 130 DLVGEEITSIPDNVDCYV-CSQPPNQPNLVAKLLGNLTYRLYASPEYLRRNGTPTRPEDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++H  I    ++        W L + D     +PR + +  N Y     + + G GI LL
Sbjct: 189 EQHPRI----VLTTSPRAGGWHLRSQDASFHSQPR-TIVTTNDYWVTKTFAIDGYGIVLL 243

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD+  +   D   L+ ++ D       VY  Y +      KL+A  + +
Sbjct: 244 PDFFTRPEIDAGILIPLLPDWHADKVPVYCVYQQQRYMGRKLRALVDLM 292


>gi|327188133|gb|EGE55354.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 293

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 8/240 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V       GS + AAE+L +S++  SR I+ +E   G +L +R  R L+LT  G ++  
Sbjct: 8   KVLLKTVERGSASAAAEELGMSRAMASRYIAAMEDWSGTRLLHRTTRQLSLTSAGERVLD 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
           +  ++  ++     E+   +  P G LR+     L +  L   L +F  LYP I++ L +
Sbjct: 68  MCRDIT-RVADAVTEVANHAETPHGLLRVTAPAILAEAQLIPLLSDFADLYPRIKVDLQI 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ID+  D  D AIR+   +   SLI ++L       YA+P YL+    P   ++LD+
Sbjct: 127 SDRAIDLVQDRIDLAIRIANRLD-PSLIAKRLGQCSSLLYASPQYLEKYGIPTGPEDLDR 185

Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  +T+  L         W L + +  I        Q N  +++ +  + G GIA+LP +
Sbjct: 186 HRCLTYTHL-----GGSEWSLRSSESQIVIAVEGTFQTNDAVALRRAALSGLGIAMLPRF 240


>gi|302878706|ref|YP_003847270.1| transcriptional regulator, LysR family [Gallionella
           capsiferriformans ES-2]
 gi|302581495|gb|ADL55506.1| transcriptional regulator, LysR family [Gallionella
           capsiferriformans ES-2]
          Length = 311

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 1/180 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A SGSF+ AA +L L+  +ISR ++ LE  +G++LF R  RGL LTE G + 
Sbjct: 6   NLESFVRSAESGSFSAAARRLSLTPGAISRNVAYLERNLGVQLFQRSTRGLALTESGERF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        ++    ++  ++ +P+G L+++  +  G   L   +  FL  YP +    
Sbjct: 66  LQSVQGGLDSIQGAIADVMVNAGQPAGMLKVSAPLSFGMEFLLPLMPAFLERYPAVTTDW 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             DN+ +D   D  D A      +    +  R+L  +H+ A A P +L   R P    EL
Sbjct: 126 HFDNRPVDFIADGYDAAFGAGFEL-PPGMKARELARVHLIAVATPAFLHGKRRPKDPSEL 184


>gi|167589223|ref|ZP_02381611.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 322

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  + G  LT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEEAMGTLLFDKSRSGGFVLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L +F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVANTGHALSGHVRIGSTEGFGCFFLAPQLAQFRAAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     + ++   AD AI L +P +    +  KL    +  YA   YL +    
Sbjct: 131 HVTVDLLPVPHFVSLTKREADLAITLERP-ERGPYVCTKLCDYQLRLYATRAYLASHPPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L  H  I++ D +    E       V       R + + +  Y + +Q    G G
Sbjct: 190 AGVGDLAAHTFISYVDDLAFSSELLYLERAVPGAAAGLRTTSV-IAQYFAALQ----GGG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP +I    P LV ++ D +  +   +    E L+   ++ A  +++
Sbjct: 245 LAILPCFIAAQQPALVPVLADEVVVTRCFWLTCREDLRKLRRVTALWDYL 294


>gi|56710248|dbj|BAD80971.1| LysR family of transcriptional regulator [uncultured bacterium]
          Length = 312

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 134/296 (45%), Gaps = 23/296 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  VA +GSFT AA+ L  S + +SR ++ LE  V  +L  R  R L+LTE G +
Sbjct: 5   NSLRVFVRVADAGSFTTAAQALDFSTAQVSRLVADLEQHVQARLLQRTTRRLSLTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++   +     E + + ++P+G+LR+     LG  L+   +  +  LYPD+ ++
Sbjct: 65  FLLRARQILDDMAEATAEARGAHLEPNGRLRLHCLTGLGV-LMTPLIARYCELYPDVVVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  ++ D   D  D  I +   +  S  + + +  I     A+P Y+     P   ++
Sbjct: 124 LTLSQRNPDPLEDGHDVVISIAHELADSQFVAQTVGCIFSMPCASPAYIARRGLPTRPEQ 183

Query: 186 LDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           L++H  +      +GD          W+   ++  GE  +      Q N   +++     
Sbjct: 184 LNEHCCLRMIDPLYGD---------EWVFRDEQ--GEHCVVPGKTFQSNVPEAMVNASEA 232

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI+LLP Y    +     L+R++ +       VY  YP       K++ + +F+
Sbjct: 233 GMGISLLPFYTATRSLREGTLLRLLGNHRLRERNVYALYPSKRFLDAKVRTWVDFL 288


>gi|21244755|ref|NP_644337.1| LysR family transcriptional regulator [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21110450|gb|AAM38873.1| transcriptional regulator lysR family [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 304

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 120/284 (42%), Gaps = 6/284 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+  R F  V   GS + AA  L L+Q +I R ++ LE  + + LF R   GL  T+
Sbjct: 4   TISWELYRSFLAVLEEGSLSAAARALGLTQPTIGRHVAALEDLLAVPLFVRSQTGLLPTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +       Q           G +RI+ +  +G  +L   L      +P 
Sbjct: 64  AAQALRSHARAMADIAAALQRAASRHGEAVQGTVRISASEVVGAEILPPILAALRAAHPQ 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+L N+  D+    AD A+R+ +P Q   L+ R++  + +  +A P Y+     P 
Sbjct: 124 LRMELVLSNRVQDLLHRQADVAVRMIRP-QQDLLVARRVGKVAIGLHAHPDYVDRHGLPQ 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H L+ F    P     F   A    P  EP    L+ +S L+ +     G GI
Sbjct: 183 RPEDLAQHALVGFDTDTP-----FLRGARKGFPFWEPAAFALRADSDLAQLALIRAGCGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
                 + +  P L+ ++   +  +  V+    + L+ +    A
Sbjct: 238 GFCQAMLARRTPGLLPVLPQQVGVALDVWVTMHQDLRASAACSA 281


>gi|332530437|ref|ZP_08406380.1| transcriptional regulator, LysR family protein [Hylemonella
           gracilis ATCC 19624]
 gi|332040097|gb|EGI76480.1| transcriptional regulator, LysR family protein [Hylemonella
           gracilis ATCC 19624]
          Length = 298

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 124/284 (43%), Gaps = 6/284 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+  R F  V + GS + AA +L L+Q ++ R IS LE  +G+ LF R   GL  T+
Sbjct: 4   TIGWELYRTFLAVLQEGSQSGAARELGLAQPTVGRHISALEESLGVTLFTRSQTGLLPTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      ++      +   +       G +R++ +  +G  +L   L      +P 
Sbjct: 64  LALSLREDLEAMHSTAAALERNARGLGAGIRGAVRVSASEVMGVEVLPPILVALREQHPG 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L+L NK  D+    AD A+R+  P Q   L+  ++  + +  +A   Y+    +P 
Sbjct: 124 LEIELVLSNKVQDLVRREADIAVRMTSP-QQDVLLATRVGEVPVGLFAHQSYIAAHGQPE 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L +H LI F    P     F   A+  +P+ +      + +S L+       G+GI
Sbjct: 183 HMADLAQHTLIGFDQETP-----FIRAASERQPLWKRENFAWRCDSDLAQRALLRAGAGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
                 + +    LVR++ D      T +    E L+   + +A
Sbjct: 238 GACQVELARRESELVRVLADQFVFPLTTWVVMHEGLRANPRFRA 281


>gi|330967373|gb|EGH67633.1| transcriptional regulator, lysr family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 301

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 135/300 (45%), Gaps = 20/300 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF+ AA  L +S S++S  + GLE+ + ++LF R  R + LTE G +L
Sbjct: 8   ELTAFVAIAEQRSFSGAARMLGVSPSALSHSMRGLESRLELRLFNRTTRSVALTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +   LE    ++      PSG +R++ +    + L++  +  FL   P I I+ 
Sbjct: 68  FRRVQPLLGDLECAVNDVTSERNTPSGLIRLSASESSFKLLIRHVMPRFLKDNPQIHIEC 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185
           + D + +DI  D  D  +RL   +    +  R    I   A A+P YL     P++   +
Sbjct: 128 VADTRLVDIVADGFDAGVRLFDDVPRDMIAVRFGPDIRFAAVASPEYLSRHPAPVNTPHD 187

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H  I F    G L    ++     A++D  +  P    + +++   + +  + G GI
Sbjct: 188 LKAHRCIRFRFASGTLFRWDLDHLGRSASID--VDGP----MTMDNINLMAEAALAGIGI 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LP++ V ++     LV ++ D   P +T     YP        L+ F   +    RDW
Sbjct: 242 AWLPEHQVAEHLQAGRLVHLLPD-WGPRYTGACLYYPANRHPPMALRMFAEAL----RDW 296


>gi|221209845|ref|ZP_03582826.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221170533|gb|EEE02999.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 290

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 27/293 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR GSFT AAEQL ++Q ++SRQI  LE   G  LF RHA+GLTLT +G +L 
Sbjct: 10  LQIFSTVARHGSFTRAAEQLCVTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V +E + ++E    +L       +  L++ T +      +   +  F   +PD+ +Q+ 
Sbjct: 70  PVVNESFARIEDISSKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQE 185
              +  +D S +  D AI +      + ++   L    +    AP   +    PL ++ +
Sbjct: 125 TAWQHVVDFSSEPFDAAI-VYGTSPGAGVVALPLFGERLTPVCAPELRQTT--PLDAVDD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--------TVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           L +H L+          +  +W A        TVD P   P    L + +  ++  + V 
Sbjct: 182 LARHTLLH------PTRDHRDWRAWLEHAGVRTVD-PERGPTFDTLDLATNAAMQGFGVA 234

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + L+ D +      L R  + V+      +F YPE+  +  K++AF ++I
Sbjct: 235 IGDVTLVDDDVSAR--RLERPFDIVLETGARYFFVYPESGGSQQKIRAFSDWI 285


>gi|116053777|ref|YP_788212.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588998|gb|ABJ15013.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 306

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 1/186 (0%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  V  SGS T AAE+L +S++ +SR ++ LE  VG +L +R  R L+LT+ G++L  
Sbjct: 8   RVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWVGARLLHRSTRRLSLTDAGAELLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    +  Q   Q     P G LRI +++   Q  L      F+  YP   I L +
Sbjct: 68  QCREMLAVADAMQATGQTRRDSPRGTLRITSSLSFAQAWLTRAAAAFVERYPGTAIDLQV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +++  +  D A+R+   +   +LI R+L        AAP YL+    P   ++L  
Sbjct: 128 NSQVVNLVEERIDLALRIANQLD-PNLIARRLGECRSVICAAPDYLRGHGTPRRPEDLAL 186

Query: 189 HNLITF 194
           HN +T+
Sbjct: 187 HNCLTY 192


>gi|307822701|ref|ZP_07652932.1| transcriptional regulator, LysR family [Methylobacter tundripaludum
           SV96]
 gi|307736305|gb|EFO07151.1| transcriptional regulator, LysR family [Methylobacter tundripaludum
           SV96]
          Length = 300

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 139/296 (46%), Gaps = 23/296 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  +VF  +   G+FT  A +++LS   IS+ ++ LE  +G+ L  R  R L++TE G  
Sbjct: 5   NNTQVFCRIVELGTFTAVAREMNLSAMMISKYMAQLEESLGVALLNRTTRQLSMTEAGKI 64

Query: 66  LHRVTSEV---YHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +  + ++   + +LE  T+Q+ LQ   VK  G L+I+  ID G   +   +  +   YP
Sbjct: 65  YYYRSKQLLDDFSELEEYTSQLGLQ---VK--GTLKISAPIDFGGLYMVPAIDAYQRAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I + L N  +++S    D +I +   +    ++ RK+    +  YA+P Y+    EP
Sbjct: 120 DVKILMTLHNSQVNLSEGSFDLSILVTDTL-DLGVVARKIAQTRLCTYASPDYIAEHGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
            +I EL  H  + + D   K   D+ W+   D    E +I        N+  ++ Q   L
Sbjct: 179 QTIAELSSHRCLHYMDTPHK---DY-WVFNDDGE--EVKIKANWHFASNNGRALCQAAAL 232

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI   P+  V    +   L+ I+     PS  +Y  Y +      KL  F +F+
Sbjct: 233 GMGITQAPELSVMNYLEQGKLMEILPAFRIPSLEIYATYLQRRFLPAKLATFVDFL 288


>gi|239814060|ref|YP_002942970.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800637|gb|ACS17704.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 350

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 105/210 (50%), Gaps = 1/210 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D+LR+F  VA   SF+ AA+QL L+++ +S  +  LE  +G +L  R  R + LTE 
Sbjct: 1   MNTDELRIFSRVAELASFSRAADQLGLTRARVSVAVQQLEERLGTRLLQRTTRSVRLTED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++      +   + E      +  +   +G+LR+     + ++L+   L EFL  +P +
Sbjct: 61  GARFLDRCKDYLAEGEQLATMFRSHAGGLTGRLRVDLPNAIARDLVIPRLPEFLARHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +   ++ +D+  +  DC +R+   +  S L+ R L  + M   A+P YL+    P +
Sbjct: 121 EVGISTSDRRVDLVHEGFDCVLRVGM-LGDSELVARPLGALRMANAASPGYLRAHGTPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD 212
           + +L +H ++ F   +      + +L   D
Sbjct: 180 LDDLAQHQVVHFAQTLSSSDAGWEYLDPAD 209


>gi|167577769|ref|ZP_02370643.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 300

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 135/290 (46%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+ G 
Sbjct: 4   FQEMQVFVRIAERQSFSRASDDLQIPRATVTNLMKRMEARLGTRLLERTTRTVRLTQDGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   LE  +   ++++  P G LR+     L +  +   L +FL  YP I++
Sbjct: 64  AYYRRCVRLIADLEEAEGAFRDAA--PKGLLRVNLQGTLARYYVVPALPDFLARYPGIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP  + 
Sbjct: 122 HIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPADLA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  + +  +     +      TVD  + E R+ + + V          V G GI  
Sbjct: 181 ALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQ 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y + D   +  L  ++     P   V   YP++ + + +++ F  ++
Sbjct: 239 VPRYRIADELAHGRLKIVLAAYPPPPMPVSVLYPQSRQLSSRVRVFARWL 288


>gi|161520595|ref|YP_001584022.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353217|ref|YP_001948844.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia multivorans ATCC 17616]
 gi|160344645|gb|ABX17730.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337239|dbj|BAG46308.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia multivorans ATCC 17616]
          Length = 290

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 27/293 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR GSFT AAEQL ++Q ++SRQI  LE   G  LF RHA+GLTLT +G +L 
Sbjct: 10  LQIFSTVARHGSFTRAAEQLCVTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V +E + ++E    +L       +  L++ T +      +   +  F   +PD+ +Q+ 
Sbjct: 70  PVVNESFARIEDISSKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQE 185
              +  +D S +  D AI +      + ++   L    +    AP   +    PL ++ +
Sbjct: 125 TAWQHVVDFSSEPFDAAI-VYGTSPGAGVVALPLFGERLTPVCAPELRQTV--PLEAVDD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--------TVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           L +H L+          +  +W A        TVD P   P    L + +  ++  + V 
Sbjct: 182 LARHTLLH------PTRDHRDWRAWLEHAGVRTVD-PERGPTFDTLDLATNAAMQGFGVA 234

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + L+ D +      L R  + V+      +F YPE+  +  K++AF ++I
Sbjct: 235 IGDVTLVDDDVSAR--RLERPFDIVLETGARYFFVYPESGSSQQKIRAFSDWI 285


>gi|253689850|ref|YP_003019040.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756428|gb|ACT14504.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 302

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 127/291 (43%), Gaps = 12/291 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT+ G K    
Sbjct: 9   VFVTIIDRGSMIAAAETLDMSRAMVTRYLAEMEAWAGARLLHRTTRKLSLTDAGEKTLAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+       +IE        SG LR++ +  L Q  L   +  FL  +P + I L ++
Sbjct: 69  CREMLALTADMRIEADTDDATLSGLLRLSCSQSLAQGALGMAITTFLRHHPRVAIDLQMN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +++  +  D A+R+   +   +LI R L        A+P YL     P  + +L  H
Sbjct: 129 NRAVNLVEERIDLALRITNELD-PNLIARPLARCESVLCASPSYLNEHGIPRQLTDLSIH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N +T+     K +  F+     D     P    L  N  L ++   + G+GIAL P Y V
Sbjct: 188 NCLTY-TYFGKSLWHFS---RDDEKFTIPVSGNLSGNESLVLLAGALEGAGIALQPRYSV 243

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                   LV ++ +    +  +Y  Y    +    L+   +F+     DW
Sbjct: 244 TPYLATGQLVALLPEYRPQAMGIYGIYTSRRQMPAALRTLLDFLV----DW 290


>gi|83749620|ref|ZP_00946604.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207738749|ref|YP_002257142.1| hypothetical protein RSIPO_03437 [Ralstonia solanacearum IPO1609]
 gi|83723727|gb|EAP70921.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206592117|emb|CAQ59023.1| hypothetical protein RSIPO_03437 [Ralstonia solanacearum IPO1609]
          Length = 316

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 93/174 (53%), Gaps = 2/174 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LE  +G++L  R  R + +T+ G
Sbjct: 3   DLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           S  +    EV  +      E+ E +  KPSG+LR++  + +    L   L +FLL  P++
Sbjct: 63  SAFY-AQCEVMTQAARAAFEVAEHAGEKPSGRLRVSCPVGVAHVFLAPVLSKFLLAQPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           +++L + N+ +D+  +  D A+R+R  +  S+L+ R          A+P ++  
Sbjct: 122 RLELDVTNRRVDVIGEGYDVALRVRATLDDSNLVARTFGVSDQVLVASPSFVAE 175


>gi|218672696|ref|ZP_03522365.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 302

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 17/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +RVF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E  +     +  +P G LR+     L ++ +  +L  FL  YP+I+ 
Sbjct: 64  AYYQRCLSILADIEDAEGAF--AGARPKGLLRVDVHGTLARHFVLPSLPSFLDAYPEIEF 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R+  P   S ++ R+L  +     A+P Y+     P    
Sbjct: 122 HMSEGDRLVDLVREGIDCVLRVGTP-GDSDMVARRLAMLDEITLASPAYIAAHGLPQHPD 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L  H ++ F     G L+P    +F     V R I  P  + + VN+  S +    +G 
Sbjct: 181 RLTGHRMVGFRSSSTGTLLPL---EFIVDGAV-RNITLP--ATVAVNAAESYVSAARMGL 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  +P Y  + +     LVR++ED       V   YP   + + +++ F N++
Sbjct: 235 GLIQIPRYHAEKDLTEGRLVRVLEDFPLTPTPVSLLYPRNRQLSPRVRVFINWL 288


>gi|319796589|ref|YP_004158229.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315599052|gb|ADU40118.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 306

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 135/293 (46%), Gaps = 14/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A  GS + AA +L +S  ++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 9   ELGFFSTLAACGSLSAAARELGISTPAVSKRLAQMEARIGVTLLNRTTRRMSLTPEGELY 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   ++     L E+  +P G LR+  T+  G++ +   + +F   +P++++QL
Sbjct: 69  VEHARGILGAIDDMAQLLGEAKAEPRGLLRVNATLGFGRSHVAALISKFARKHPEVEVQL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  IR   P + S +I R++ +      A+P YL     P    +L
Sbjct: 129 QLSVNPPPLTDDAFDVCIRFGAPPE-SRVIARRIASNRRLLCASPAYLARAGHPKVPNDL 187

Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGSG 240
            +H  I     I +  E +  W  +  R   +          L  N     + + + G G
Sbjct: 188 TRHRCIG----IRQGDEAYGVWRLSSGRGAAQHTEAIKTRGALSTNDGEIAVNWALDGHG 243

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +  ++ +     +  LV+++ +  TP   +Y  YP+  + + +++AF +FI
Sbjct: 244 ILMRAEWDIARYLRSGRLVQVLANYRTPDADIYAVYPQRHQLSARVRAFVDFI 296


>gi|319790928|ref|YP_004152568.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593391|gb|ADU34457.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 324

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 1/186 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  GSF+ AA+ L ++ S+ SRQ+  LE E+G++L  R  R L LTE G++     
Sbjct: 16  FLRVAELGSFSAAADLLGMTPSAASRQVKRLEKEIGVQLLQRTTRQLRLTEPGAEAFARC 75

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E+    +      Q  S KPSG +RI+      + +L  ++ +FL  YP++ +QLI+ +
Sbjct: 76  RELVAVAQGAMDIAQRFSKKPSGLVRISAPKAFARRVLHPHILDFLRRYPEVDVQLIVQD 135

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           ++ID   +  D  +RL        L+ R+L+ +     A+P YL+        + L  H+
Sbjct: 136 RNIDPIREGVDLVVRLTTE-PPEGLVARQLMPVAHILCASPRYLEQHEAIAHPRGLVAHS 194

Query: 191 LITFGD 196
            ++ G+
Sbjct: 195 CLSLGE 200


>gi|82544636|ref|YP_408583.1| transcriptional regulator LYSR-type [Shigella boydii Sb227]
 gi|81246047|gb|ABB66755.1| putative transcriptional regulator LYSR-type [Shigella boydii
           Sb227]
 gi|320183877|gb|EFW58707.1| Putative LysR-like transcriptional regulator [Shigella flexneri CDC
           796-83]
 gi|332093679|gb|EGI98737.1| hypothetical protein SB359474_2533 [Shigella boydii 3594-74]
          Length = 302

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 136/301 (45%), Gaps = 24/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINDARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
           DI+++L  D+  +DI     D  +RL      S ++++ ++++ +         A P Y 
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYF 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               +P    +L  H  + F    P   + F+W    +  I       + ++   + ++ 
Sbjct: 175 ARYGKPRHPHDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEA 229

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289
            ++G+GI  L    +K   D   L  ++ D  T  P F +Y  YP     +  L+AF ++
Sbjct: 230 VLMGAGIGYLLYEQIKEYLDTGRLECVLGDWSTERPGFQIY--YPNRQYMSCGLRAFLDY 287

Query: 290 I 290
           +
Sbjct: 288 V 288


>gi|191168818|ref|ZP_03030593.1| HTH-type transcriptional activator TtdR [Escherichia coli B7A]
 gi|190901147|gb|EDV60921.1| HTH-type transcriptional activator TtdR [Escherichia coli B7A]
          Length = 310

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+         I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEF-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|328545095|ref|YP_004305204.1| LysR family transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326414837|gb|ADZ71900.1| LysR family transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 308

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 16/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + A  ++ LS + +S++I  LE  +G +L  R  R + +TE G   +
Sbjct: 1   MEIFARVVSAGSMSAAGREMALSPAVVSKRIRRLEDRLGTRLLQRTTRQIAMTEAGQGFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S +  G L++      G+  +   L  FL   PD+ + L 
Sbjct: 61  ERVVAILASVEEAESFVTRGSAQARGTLKVTAPTSFGRLHIAPYLGRFLEDNPDLAVNLD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI  +  D AIR+ + +  SSL+ R+L  +H    AAP YL    EP SI++L 
Sbjct: 121 LADDFVDIVGEGYDLAIRIAE-LSDSSLVARRLAPVHRILCAAPSYLSRYGEPRSIEDLQ 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           ++++      I    +D  W     R I   R    ++ NS   + +  + G G+AL   
Sbjct: 180 ENHVC-----IAAAAQD-PWRLMGPRGIEIVRTGAPVRTNSSEVVREALLAGVGVALRST 233

Query: 247 YIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
           + +   P L      ++ P +       ++  YP       K++ F +F+
Sbjct: 234 WDI--GPELRDGKLRIVLPQYRASKDVGLHAVYPSRRFLPAKVRVFIDFL 281


>gi|330809407|ref|YP_004353869.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377515|gb|AEA68865.1| putative transcriptional regulator, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 116/272 (42%), Gaps = 14/272 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VAR GSFT AA  L ++QS++S+ I+GLE  + I+L  R  R ++ T  G +L +  
Sbjct: 16  FVTVAREGSFTRAAGALGVTQSALSQAINGLEARLQIRLLTRTTRSVSPTVAGERLLQAI 75

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              + ++E     L E   KP+G +RI     + +  L   L E L  YPD+ ++  +  
Sbjct: 76  GNRFDEIEAELDMLTEMRDKPAGTVRITCGDHVLRTTLLPKLTELLHDYPDVNVEFDVCY 135

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLI-----QRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              DI  D  D  +RL   I    +        ++  +   AY A H +      L    
Sbjct: 136 GFRDIVADRFDAGVRLGDTIDKDMVAVPIGPPLRMAVVASQAYFAAHAIPKAPRDLMSHR 195

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
                + T G L     E       V R  G+     L  N+   I+Q  V G G+A LP
Sbjct: 196 CINQRMQTSGGLYVWDFERRGKQVNV-RVDGQ-----LIFNTSTHIVQAAVAGLGVAYLP 249

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           +   +       LVR++ED   P    Y  YP
Sbjct: 250 EEEFEPYLQEGRLVRVLEDWCPPFSGYYLYYP 281


>gi|294626698|ref|ZP_06705293.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598946|gb|EFF43088.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 304

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 120/284 (42%), Gaps = 6/284 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+  R F  V   GS + AA  L L+Q +I R ++ LE  + + LF R   GL  T+
Sbjct: 4   TISWELYRSFLAVLEEGSLSAAARALGLTQPTIGRHVAALEDLLAVPLFVRSQTGLLPTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +       Q  +        G +RI+ +  +G  +L   L      +P 
Sbjct: 64  AAQALRSHARAMADIAAALQRAVSRHGEAVQGTVRISASEVVGAEILPPILAALRAAHPQ 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+L N+  D+    AD A+R+ +P Q   L+ R++  + +  +A P Y      P 
Sbjct: 124 LRMELVLSNRVQDLLHRQADVAVRMIRP-QQDLLVARRVGKVAIGLHAHPDYADRHGLPQ 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H L+ F    P     F   A    P  EP    L+ +S L+ +     G GI
Sbjct: 183 RPEDLAQHALVGFDTDTP-----FLRGARKGFPFWEPAAFALRADSDLAQLALIRAGCGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
                 + +  P L+ ++   +  +  V+    + L+ +    A
Sbjct: 238 GFCQAMLARRTPGLLPVLPQQVGVALDVWVTMHQDLRASAACSA 281


>gi|289662181|ref|ZP_06483762.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 325

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 139/292 (47%), Gaps = 13/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VA  GSFT AA+ L L ++S+S  +  LE  +G +L +R  R + LT  G+ 
Sbjct: 27  ESLRAFLRVAELGSFTRAAQTLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLTGDGTA 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ + ++   ++  Q   Q    +  G+LR+  +  + ++ +   L  FL  +P +Q++
Sbjct: 87  FYQRSRDLLDDMDELQSMFQRERSQLRGRLRVDMSAGIARHFVIPALPAFLAQHPQLQVE 146

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC +R+   ++ ++L+ R L    + + A+  YL     P  + +
Sbjct: 147 ISGTDRRVDVVREGFDCVLRVGT-LEDTNLVARPLGAFRIVSCASAQYLARRGTPHCLDD 205

Query: 186 LDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L +H+L+    T G   P   E ++  A    P+  P    + VN+    +   + G GI
Sbjct: 206 LAQHDLVHYVPTLGQRSPG-FEYYDGQAYQLLPMRGP----VTVNNGDGYLAAALAGLGI 260

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P   ++    +  LV I+ ++      V   Y +      +++AF +++
Sbjct: 261 IQAPASPLRAHLHSGALVEILPNLAVEPMPVTLLYAQRRHLPQRVRAFMDWV 312


>gi|207724934|ref|YP_002255331.1| hypothetical protein RSMK03392 [Ralstonia solanacearum MolK2]
 gi|206590161|emb|CAQ37122.1| hypothetical protein RSMK03392 [Ralstonia solanacearum MolK2]
          Length = 316

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 93/174 (53%), Gaps = 2/174 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LE  +G++L  R  R + +T+ G
Sbjct: 3   DLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           S  +    EV  +      E+ E +  KPSG+LR++  + +    L   L +FLL  P++
Sbjct: 63  SAFY-AQCEVMTQAARAAFEVAEHAGEKPSGRLRVSCPVGVAHVFLAPVLSKFLLAQPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           +++L + N+ +D+  +  D A+R+R  +  S+L+ R          A+P ++  
Sbjct: 122 RLELDVTNRRVDVIGEGYDVALRVRATLDDSNLVARTFGVSDQVLVASPAFVAE 175


>gi|319795554|ref|YP_004157194.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598017|gb|ADU39083.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 323

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 132/286 (46%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  +GSF  AA+ L +S++S+SR I  LE+ +G +L  R  R +  TE G +  
Sbjct: 7   MQAFVAVVEAGSFVGAADALGISKTSVSRLIVDLESHLGTRLLQRTTRRVRTTEAGERFF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +   LE  + E+   ++ P G LR++  +  G   L   L  +   YPD+++++ 
Sbjct: 67  ARASLLLSDLEEAESEVTWRTLTPHGVLRVSVPLSFGPRYLAPLLPLYRNQYPDVELEVS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+  D  D AIR        + + R L  + +   A+P Y+     P +   L 
Sbjct: 127 STDHLVDLVDDGFDLAIRGAW-QHGETYVARHLAPLRIVICASPGYVAMHGAPPTPDALA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN +T   +     E + +  T D  +  P    ++ +S   ++   + G GI  +P +
Sbjct: 186 AHNCLT--KISGAVSETWTFSRTGDT-VAVPVRGSMRADSDDILLTAALAGEGIVAMPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  D+    +LV ++ D   P  T+   YP     + K++ F  F+
Sbjct: 243 MAGDDIAKGDLVPLLLDWQYPPATLMAVYPTRRYLSAKVRTFVEFM 288


>gi|331669916|ref|ZP_08370761.1| HTH-type transcriptional activator TtdR [Escherichia coli TA271]
 gi|331062829|gb|EGI34743.1| HTH-type transcriptional activator TtdR [Escherichia coli TA271]
          Length = 310

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ I++  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIELVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|260774001|ref|ZP_05882916.1| LysR-family transcriptional regulator [Vibrio metschnikovii CIP
           69.14]
 gi|260610962|gb|EEX36166.1| LysR-family transcriptional regulator [Vibrio metschnikovii CIP
           69.14]
          Length = 300

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 137/302 (45%), Gaps = 16/302 (5%)

Query: 6   DKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL   +VF  VA + SFT  A++L +S+  ++R I  +E+ +  +L  R  R ++LT  
Sbjct: 2   DKLTAAQVFLDVAITQSFTATADRLDISRPMVTRHIETMESWLQTRLLNRTTRKVSLTTA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +          + +  + +L +S    +GK+RIAT++  G   L   +K FL  +P +
Sbjct: 62  GEQCLEAIKLWVEQAQQLEHQLMDSQ-SLAGKIRIATSMSFGFAQLIPAVKPFLAKHPQV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I + + +K  D+  +  D AIR+       SLI R +        AAP YL        
Sbjct: 121 EIDIDVQDKTADLIAERIDLAIRIAAD-PDPSLIGRPIAKCDSILVAAPSYLAAHPAITQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +L +H  + +     K  E   W  T    +    +SC L  N   +++   V G GI
Sbjct: 180 PSDLTQHACLGY-----KNFERHIWHLTKGETLQSVEVSCRLTANEATTLLHAAVHGMGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARD 296
           AL P Y+         +V ++ D    + ++Y  YP     +  ++A  + +  +  + D
Sbjct: 235 ALQPTYLTSGALAKGEVVSVLADWQPKTMSIYALYPSRRHLSPAVRALIDHLADYFASHD 294

Query: 297 WK 298
           W+
Sbjct: 295 WQ 296


>gi|239994447|ref|ZP_04714971.1| LysR family substrate binding transcriptional regulator
           [Alteromonas macleodii ATCC 27126]
          Length = 305

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 34/299 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  VA + +F  AAE++ +S+  +S QI  LE  +G+KL  R  R ++LT +G +
Sbjct: 8   ERLMLFSAVAETLNFGAAAEKMQISRGYLSEQIRELELALGVKLLQRSTRQVSLTNEGKQ 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLR--IATTID--LGQNLLQGNLKEFLLLYPD 121
           ++  T     K+  + +EL+++ V+   +L   IA T        LL      F   +PD
Sbjct: 68  VYADT----QKINRSVVELEQNLVREQTQLEGIIAITAPNMFAHYLLSELCFSFSQQHPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +   L    +  D++  + D A R    P Q   ++ + L T      AAP YLK    P
Sbjct: 124 VSFHLDTSYQRHDLNRGHFDLAFRSTNNPPQ--DMVAKPLFTYSHTIVAAPQYLKQAGTP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +LD H      D      +D NWL    R   +     L++N  L+++Q+ + G G
Sbjct: 182 KVLSDLDAHQCFCGPD------QD-NWLIKGKRTAVK---GWLKLNDNLALIQHVLEGRG 231

Query: 241 IALLPDYIVKDNPN---LVRIMEDV----------ITPSFTVYFCYPEALKNTGKLKAF 286
           IA LP Y+ K +     LV + E++          I  +  ++  +P+    + ++KAF
Sbjct: 232 IARLPSYVAKKHSKAGELVALFEEIKLGSTPSEPPIKSTSQLFVVHPQRPHQSLRIKAF 290


>gi|206577630|ref|YP_002235946.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206566688|gb|ACI08464.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 304

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 6/275 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS + AA  L++  +++SR I  LE+ +G++L  R  R LTLT+ G         +  ++
Sbjct: 17  GSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTDAGVDYVAAARRILEEV 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E  + +      +P G+L I+     G+  +   + EF+  YP I+++L+L +++ D+  
Sbjct: 77  ENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPQIRVRLLLSDRNADLVS 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           D+ D A+R+   +  SS++  +L T+ + A A P  L    EP   ++L    +I     
Sbjct: 137 DHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQRPRDLAALPIIRIESP 195

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254
           +P     F      D+ I  P +  L V +  S      LG G+A L  Y   D   +  
Sbjct: 196 MPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGVARLLHYQALDGLRHGE 253

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L  ++E+V      V+  Y        KL+ F +F
Sbjct: 254 LRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDF 288


>gi|206562386|ref|YP_002233149.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038426|emb|CAR54384.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 296

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 128/300 (42%), Gaps = 23/300 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+ 
Sbjct: 12  NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                    H +     +L    VK    L I+TT       L   L +F   +PD  ++
Sbjct: 72  YFSDVQRALHAIADATDKL----VKRRAALTISTTPSFASKWLIPRLAQFTDAHPDYDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP--LSI 183
           +I D +      D  D AIR  KP     L    L  + ++A  +P  L     P  L+ 
Sbjct: 128 VIADPQIATFRHDGVDLAIRYGKPPFGKHLATHALFPLDVYAVCSPSVLTAPASPRALAG 187

Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           Q L  D H      DL P+      +LA +  P+       L+ N     +   V G GI
Sbjct: 188 QVLLHDAH------DLWPE------FLAAMPEPVDVDPHKGLRFNQTSLAIDAAVAGQGI 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           AL  + +V+ +    R+ +  +     S   Y  YP   ++   +   R ++   A D +
Sbjct: 236 ALATEPLVERDIAAGRLCKPFVFAFPLSMGFYLVYPAERRDDDAIAVMRAWMIQAASDGR 295


>gi|159185644|ref|NP_357405.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159140778|gb|AAK90190.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 297

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 145/303 (47%), Gaps = 38/303 (12%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA +   S++ +S+ +  LE ++G  L  R  R  +LTE G   
Sbjct: 6   RIRAFIDVVEAEGFSAAARKTGRSKALLSKYVRELEDDLGALLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIAT-----TIDLGQNLLQGNLKEFLLLYPD 121
           +R  S++  +++     ++E +    GKLRI+        D+GQ+L+     +F    P+
Sbjct: 66  YRTASDILKEIDNLADLVREKNADLKGKLRISVPRTFIDADIGQSLI-----DFAKENPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN----- 176
           + ++++ D++ +D+  +  D AIR+ + ++ S LI RKL    ++A A   ++       
Sbjct: 121 LVLEIVADDRFVDLIEEGFDLAIRITR-LEDSGLIARKLSDFRVYAVATADFVAKHGPLD 179

Query: 177 -----CREPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
                 R P  I    + HN + +    P      N +A     I  P    ++VNS  +
Sbjct: 180 GPQDFARVPFIIDTNTRFHNTVRY--FEPDGGS--NSVA-----ISGP----IEVNSPQA 226

Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            ++    G GIA++PD+I +    +  LV + +D I+    +Y  YP       K+++F 
Sbjct: 227 TLRAARAGLGIAMVPDFIARPHIQSGELVTLFDDYISKDRGIYAVYPHRRYLPAKVRSFV 286

Query: 288 NFI 290
           +++
Sbjct: 287 DYL 289


>gi|330889952|gb|EGH22613.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 302

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 132/279 (47%), Gaps = 9/279 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +  SGS + AA+    S +S+ R ++ LE+ +G++L  R  R + LT++G +  R T
Sbjct: 10  FVRIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTDEGEEYLRWT 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +    +  +  L        G LR+   ++ GQ  +   +  FL  + DI ++L L++
Sbjct: 70  RRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLSEHQDINVELNLND 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + + +  +  D A+R+   +  S+++ R++    + + A+P YL+      + + L +H 
Sbjct: 130 QIVPLLDERLDLALRIGH-LPDSAMVARRIGATRLVSCASPGYLRTAPLLDTPKSLPEHA 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            IT      +          +   I  PR+ C QV +       CV G G+  L  Y V 
Sbjct: 189 CITLASHGRQWYFRHQGKELIQDII--PRLVCNQVRAA---SLACVQGLGVTRLMHYQVA 243

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           D   +  L+R++++  T    +   YP AL+ + ++KAF
Sbjct: 244 DELADGRLIRVLDNFETADLPIQLVYPHALQLSPRVKAF 282


>gi|325522927|gb|EGD01373.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 331

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +    SFT AA  L +S+++ +R +  LET +G+ L  R  R L  T +G   +
Sbjct: 8   MRIFARIVEMNSFTRAALSLGISRATATRTVQDLETALGMPLLVRTTRALRTTPEGDAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   ++  +  ++ ++  PSG LR+     +   ++   L  F   +PD+ + L 
Sbjct: 68  RRCLRITADVDELEASIRRAARHPSGPLRVDLPGPVASAIVLPALGAFHARHPDLMLMLG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  +  D+  D  DC+++L + +  SS + R L  +     A+P YL  C  P ++ EL 
Sbjct: 128 VSARAADMVGDAVDCSVQLGE-LPDSSFVARPLGALERVTCASPAYLDRCGTPRTLDELG 186

Query: 188 KHNLI 192
            H  +
Sbjct: 187 THRAV 191


>gi|319944085|ref|ZP_08018364.1| regulatory protein [Lautropia mirabilis ATCC 51599]
 gi|319742662|gb|EFV95070.1| regulatory protein [Lautropia mirabilis ATCC 51599]
          Length = 322

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 130/304 (42%), Gaps = 22/304 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L  F  +   GSF  AA +L L  S++S  +  LE ++G++L +R  R +  TE G
Sbjct: 13  DFAELAAFAAIVEEGSFRGAAARLGLRPSTVSHSLRALEEKLGVQLLHRTTRSVAPTEAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L          +E     +      P+G++R++    +   +L   L+ F+  +PDIQ
Sbjct: 73  QALFARVGPALAGMENAIEAVNAHRDLPAGRIRLSMPRCVASQVLLPRLRAFMERFPDIQ 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +  DN  +DI  D  D  IRLR+ I    +       +     A+P +L     P + 
Sbjct: 133 LDIAADNGFVDIVRDGFDAGIRLRESIPGDMVAVPVTPDLQTMVVASPDHLALHPAPRTP 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGE--PRISCLQVNSYLSIMQYCVL-- 237
            EL +H  I F  +    +  + ++  A   R  G+  P  S  QV   + +   C L  
Sbjct: 193 HELHRHRCIGFRQIGSGNVYRWEFMRAALPTREAGDTSPGSSAAQVPGLMELNLDCALVL 252

Query: 238 ------------GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
                       G G+A   D I +   ++  L++++ D  +P +  +  Y    + T  
Sbjct: 253 DDPELMLDAAARGLGLAYAMDAICRPWLEDGRLMQVLAD-WSPRYPGFCLYYPNRRITAP 311

Query: 283 LKAF 286
           L+A 
Sbjct: 312 LRAL 315


>gi|212711164|ref|ZP_03319292.1| hypothetical protein PROVALCAL_02236 [Providencia alcalifaciens DSM
           30120]
 gi|212686332|gb|EEB45860.1| hypothetical protein PROVALCAL_02236 [Providencia alcalifaciens DSM
           30120]
          Length = 297

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 140/308 (45%), Gaps = 29/308 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++  F  V  SGSFT AAE L LS+S +S  I  LE  + + L  R+ R + LT
Sbjct: 1   MQKNLKQITSFLQVVDSGSFTKAAEVLGLSRSMVSIDIKQLEKSLNVSLLVRNTRNIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  ++E      Q  +   +G LR ++T + GQ  +   + EF   YP
Sbjct: 61  EVGKHFYDDFKRIQLQIEEAFERNQNLATNITGTLRFSSTNEFGQRYVLPLVPEFCRQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q   ++   D+  +  D AIRL   +++SSL  RKL    ++  A   +L    E 
Sbjct: 121 QLRLQYSFNSSFDDLLAEKLDIAIRLGN-LKNSSLKSRKLGEYAIYLVATAEFL----EQ 175

Query: 181 LSIQELD--------KHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
             ++ +D         H L+   D    L  +  E F      + P+     S  + NS 
Sbjct: 176 YQVENVDDLANIPWITHTLLNLQDSQYALQNRHGEKF------ELPLLN---SQYESNSA 226

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            +I Q  +   G A+ P ++V+++ N   L+R++ D+  P   +   YP       K +A
Sbjct: 227 ETIRQLALASLGAAICPAWLVEEDLNAHRLIRLLPDLELPKQNIQLLYPNTQNLPAKTRA 286

Query: 286 FRNFIFLK 293
           F +F+  K
Sbjct: 287 FIDFLVKK 294


>gi|209547057|ref|YP_002278975.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538301|gb|ACI58235.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 306

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 131/289 (45%), Gaps = 10/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD L++F +V R  S T AA +L +S S++SR+++ LE  VG  L  R   GL LT  
Sbjct: 8   LDWDDLKLFLIVVRCKSVTGAARELKVSHSTVSRRLARLEYTVGGALVERTKDGLLLTPA 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R   E+ + +   + ++     +  G +R+AT   +    L   L E    YPD+
Sbjct: 68  GLVTMRRAEEIENGVNALRSDVSNRD-EIRGTVRLATMEGIATLYLSERLVELSDRYPDL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+   + I ++   AD  +   KP   +SL  + +       +A+  YL     P  
Sbjct: 127 DLELVTSPQSIRVARREADLFLSFFKP-HGTSLDSQLIGRFKTGLFASRTYLDRNGVPSD 185

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              L  H  + + G+L+   +E   WL  +   +  P+I     NS +S M     G+GI
Sbjct: 186 AANLSDHRFVGYIGELVQ--LESVLWLEEL---VPAPKI-VFSSNSMISQMFAASAGAGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP++    +  LV ++ D +     ++      L    +++A + F+
Sbjct: 240 VALPEFARSLDVGLVPVL-DGLRGEREIWLSAHHDLAYLPRVRAVKQFV 287


>gi|77460541|ref|YP_350048.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384544|gb|ABA76057.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 298

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V+   SFT A E L L +S++S Q+  LE  +G +L  R  R +  T+ G  L+
Sbjct: 7   LRTFVRVSELSSFTMAGESLGLPRSTVSEQVQALENLLGTRLLQRTTRKVQPTQDGLALY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++   ++  +   ++     +G++RI     L + L+   L EF+  +P++++++ 
Sbjct: 67  ERSKDLLSHMDEIENLFRQDEASLTGRIRIDMPNILARRLIMPKLPEFMARHPNLELEIS 126

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +D+  +  DC +R+  +P Q  S++ R L    M   A+P YL+    P ++++L
Sbjct: 127 STDRRVDLLAEGFDCVVRIGAQPDQ--SVVARHLGDFSMINCASPAYLERYGVPQTLEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H L+ +  ++    E F +     V R    P    + VNS  +    C+ G G+  +
Sbjct: 185 AQHRLVHYVGVLGSRSEGFVYEQDGQVHR---VPMPGSVTVNSTDAYESACLGGFGLIQV 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   +    D+  +V ++     P+  +   Y        +++ F +++
Sbjct: 242 PRTGMNTYLDSGEIVTVLPQYTAPAMGISLLYARQRHLPLRVRVFMDWL 290


>gi|77359925|ref|YP_339500.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874836|emb|CAI86057.1| putative transcriptional regulator (LysR family) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 300

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 130/288 (45%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F +V  + SF  AAE   +S  ++S++IS LE ++G++L YR  R L+LTE GS L
Sbjct: 6   ELTLFSLVVDAQSFNKAAEVAGISTPALSKKISRLEKDLGVQLLYRTTRKLSLTEAGSSL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +L      +       SG +++      G+ LL   + +F   YP++ + +
Sbjct: 66  YQHAKSIELQLSDALNSVSAYRGAISGSIKMTVPTISGELLLAQVVGQFCEKYPNVNVDM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+N  ID+     D AIR    +  SSLI + ++        AP+Y++   EP ++ +L
Sbjct: 126 RLENDFIDLVDKRIDLAIR-TGVLADSSLIAKPIIKSRWVVCCAPNYIEKFGEPSNLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +HN + +        E   W  T     +          N+  ++ Q  + G GI  +P
Sbjct: 185 SRHNCLAYTYQNKGARE---WRFTHQGEEVSIAIKGNFSANTAQALRQNALSGYGIVYVP 241

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              V +      LV I+ +       VY  YP       K+K    +I
Sbjct: 242 RCCVYEYLLTGELVAILSEYQPRELGVYAVYPYTRHQPEKIKLLIEYI 289


>gi|330992734|ref|ZP_08316678.1| Putative HTH-type transcriptional regulator ycaN [Gluconacetobacter
           sp. SXCC-1]
 gi|329760212|gb|EGG76712.1| Putative HTH-type transcriptional regulator ycaN [Gluconacetobacter
           sp. SXCC-1]
          Length = 304

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 92/188 (48%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VAR  SF  AA++L LS S++S  I  LE  + ++LF+R  R +  TE G++L
Sbjct: 9   ELTAFLAVARHQSFRIAADELALSPSTLSHMIRALEERLELRLFHRTTRSVAPTEAGAQL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +   LE T   +     +PSG LRI  +    + LL+  +  F+  YPD+ + L
Sbjct: 69  VAQLAPILSSLEQTLATVGMLKARPSGTLRINASRHAARALLRDIMPFFVHRYPDVHVDL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + + + IDI  +  D  IRL + +    +  R        A A+P YL     P +  +L
Sbjct: 129 VTNGRFIDIVAEGFDAGIRLAQAVPQDMIAVRFGADGRFVAVASPDYLATHGIPRTPDDL 188

Query: 187 DKHNLITF 194
             H  I F
Sbjct: 189 LHHACIRF 196


>gi|170737849|ref|YP_001779109.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820037|gb|ACA94619.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 300

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 120/285 (42%), Gaps = 6/285 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 3   IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 63  EAALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPLLAQLRRDHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P Q  +L+ R++  I +  YA   YL +   P
Sbjct: 123 GLVIELVPTDRIQDVLKREADIAVRMAPPAQ-DALVARRVGEIEVGLYARDDYLAHHGAP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I  L  H LI F  + P     F   A    P+ +     L+ +S L+ +     G G
Sbjct: 182 ATIDALAHHTLIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           I      + K +  LVR++ D +      +    E L+ + + +A
Sbjct: 237 IGFCQSALAKRDARLVRVLPDALGMRLDTWVVMHEDLRTSPRSRA 281


>gi|153837436|ref|ZP_01990103.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149749236|gb|EDM60021.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 293

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 135/274 (49%), Gaps = 11/274 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F  V + GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT +G  
Sbjct: 4   DDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNKGDA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   +V   L++   +    S++  GK+++    +  ++ LQ  L EF   YP +++ 
Sbjct: 64  YYQDLQKVLTLLDSANQQASNESIEVRGKIKLGLLPETYEH-LQPILFEFQDQYPQVELD 122

Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++N  ID+     D A+     +  S ++ RK++T+     A+P+YL+    P +++
Sbjct: 123 IRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPATLE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H  I F    P    D  W         +P++     N+   I    VL  GI+ +
Sbjct: 182 ALSDHQCICFR--WPNGNVDNLWHFQEQNVALKPKLIS---NNIGFIKSSTVLDRGISYI 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           P  +VK   ++  LV+++        T +  YP+
Sbjct: 237 PKLLVKNELESGALVQVLSQYAVTEETGWLLYPQ 270


>gi|332305426|ref|YP_004433277.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172755|gb|AEE22009.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 301

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 25/302 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VA  GSFT AAE + LS+  ++R +  +E  + ++LF+R  R ++LT QG +  
Sbjct: 7   LQSFVEVAHCGSFTKAAEIIGLSRLQVTRHVQDVEQWLNLRLFHRTTRKVSLTLQGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +   +      + +  G +R+AT I LGQNLL   ++EF+ L+P  QIQ++
Sbjct: 67  EFAKKILSSVADLESRAHSHNHELVGTIRVATPIGLGQNLLFDAVEEFVALHPKAQIQMV 126

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPLSIQE 185
           L +    +  +  D A+R + +P Q   LI R+L+ I     A+P Y+ K   +   +++
Sbjct: 127 LSDGLSQLVEERVDIALRYIDQPHQ--QLIARRLMHIDSVLCASPDYIAKQVTQDSPLEQ 184

Query: 186 ---LDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              L  HN +           +  W    AT D  +       +Q N    I++  + G 
Sbjct: 185 PSDLAAHNCLIHSS-------NHQWRIVSATSDEKVSVS--GNIQANEMGVILKAALRGL 235

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+A LP  +      +  L +++ +   P   ++  Y   L    +    R FI   A+ 
Sbjct: 236 GVANLPCDLANQYLRSQVLTQVLPEYRAPGHNLWAVY---LSRDHQQNVVRAFIDFLAQR 292

Query: 297 WK 298
           W+
Sbjct: 293 WQ 294


>gi|227325998|ref|ZP_03830022.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 302

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 127/284 (44%), Gaps = 8/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS   AA+ L +S++ ++R ++ +ET  G +L +R  R L+LT+ G K    
Sbjct: 9   VFVTIIDRGSMIAAADTLDMSRAMVTRYLAEMETWAGARLLHRTTRKLSLTDAGEKTLAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++       ++E        SG LRI  +  L Q  L   +  FL  +P + I L ++
Sbjct: 69  CRDMLALTADMRVEADTDDATLSGLLRIGCSQSLAQGALGMAITAFLRRHPRVAIDLQMN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +++  +  D A+R+   +   +LI R L +      A+P YL     P  + +L  H
Sbjct: 129 NRTVNLVEERIDLALRITNELD-PNLIARPLSSCESVLCASPSYLNEHGIPRQLTDLSIH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N +T+     K +  F+     D     P    L  N  L ++   + G+GIAL P Y V
Sbjct: 188 NCLTY-TYFGKSLWHFS---RDDEKFTIPVSGNLSGNESLVLLAGALEGAGIALQPRYSV 243

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                +  LV ++ +    +  +Y  Y    +    L+   +F+
Sbjct: 244 APYLASGQLVALLPEYRPQAMGIYGIYTSRRQMPAALRTLLDFL 287


>gi|254464242|ref|ZP_05077653.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206685150|gb|EDZ45632.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 292

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 8/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AA+ L +  +++ R I  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+      SG+L + +   L   ++   LK+F  ++P + 
Sbjct: 63  QDLLRVAQATDDQFSQLVGRLKGQGDDVSGELVVTSLASLAPMMVPA-LKQFQDMHPGLI 121

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I+ +   +   +    A  A+R    P Q  +++Q   +   +  YAA  Y         
Sbjct: 122 IRYLTGERLFRLEYGEAHVAVRAGNAPDQPDNVVQ-PFMKQQVGLYAAKTYADKYGLLKG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++++  H  +   D   +      WL   + P       C    +  + ++    G+GI 
Sbjct: 181 VEDIPNHRFVGQDDEGSRA-PFARWL-RANAPAEAIAFRCTDGATLKAAVRS---GAGIG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +  +  +  P+LV +M         ++      L  T K++AF  F+  + +DW+ 
Sbjct: 236 FMAAWEARQEPDLVEMMAPQEDWEGALWLVTHVDLHRTTKVQAFLKFLKEQVKDWQL 292


>gi|49083966|gb|AAT51162.1| PA0056 [synthetic construct]
          Length = 307

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 1/186 (0%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  V  SGS T AAE+L +S++ +SR ++ LE  VG +L +R  R L+LT+ G++L  
Sbjct: 8   RVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWVGARLLHRSTRRLSLTDAGAELLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    +  Q   Q     P G LRI +++   Q  L      F+  YP   I L +
Sbjct: 68  QCREMLAVADAMQATGQTRRDNPRGTLRITSSLSFAQAWLTRAAAAFVERYPGTAIDLQV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +++  +  D A+R+   +   +LI R+L        AAP YL+    P   ++L  
Sbjct: 128 NSQVVNLVEERIDLALRIANQLD-PNLIARRLGECRSVICAAPDYLRRHGTPRRPEDLAL 186

Query: 189 HNLITF 194
           HN +T+
Sbjct: 187 HNCLTY 192


>gi|298487434|ref|ZP_07005480.1| LysR-family transcriptional regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158053|gb|EFH99127.1| LysR-family transcriptional regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 298

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 8   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +       +P G LRIA +  L   +L   +  +L  YP   + L++
Sbjct: 68  RCQRLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSVDLLI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P S QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGHCDSVVCASPAYLAMHGTPSSPQELAA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K + +F        P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 187 HNCLTY-SYFGKSLWEFT---RQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  L+ ++ D    +  ++  Y      +  L+   +F+
Sbjct: 243 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 287


>gi|222087319|ref|YP_002545856.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724767|gb|ACM27923.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 291

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 129/292 (44%), Gaps = 17/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSF+ AA+   +S +   +QI  +E  +G +L +R  R   LTE G   +
Sbjct: 1   MAMFVRVVEHGSFSAAADAAGVSPTMAGKQIRAIEAHLGARLLHRTTRRQQLTEIGRLYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   ++       E   +P G LRI + +  G + L   L ++L +YP + + ++
Sbjct: 61  ERCKQVLADVQLADASASELQAEPRGLLRIVSPVTFGSHRLMPALSDYLAMYPAVSVDVM 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN   D+S +  + AIR+   +    L+ R L        A+  YL+    P+  ++L 
Sbjct: 121 LDNGVPDLSREGCELAIRI-GSVTEVDLVARPLQPYRRIMAASASYLERRGTPVHPRDLS 179

Query: 188 KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+ +        D       D  W + V   +       L+V +        + G+GI 
Sbjct: 180 AHDCLGLSYWRHRDQWHLFGPDGEWRSDVSGRLSADNGDALRVAA--------LNGAGIV 231

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L P+ ++ D+     LV+++ +    +  +Y  Y    + T KL++  +F+ 
Sbjct: 232 LQPEVMLADDLARGRLVQVLPEWTPVASPMYLLYAVDRRPTAKLRSMIDFLL 283


>gi|221370125|ref|YP_002521221.1| Transcriptional regulator [Rhodobacter sphaeroides KD131]
 gi|221163177|gb|ACM04148.1| Transcriptional regulator [Rhodobacter sphaeroides KD131]
          Length = 318

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 130/296 (43%), Gaps = 22/296 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R F  VA  GS +  A  + + QSS++R ++ LE  VG+ L  R  R +TLTE+G +
Sbjct: 20  DRMRTFVRVAERGSLSAVARDMRIGQSSVTRHLNELERAVGVALLSRTTRRVTLTEEGHR 79

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +     E + +    SG +R++ T  LG   +   +  F   +P+I++ 
Sbjct: 80  YYLQAVQILRLVAEASDEARRAGAASSGLVRLSCTAALGVRHIGRLIHRFQDRHPEIEVD 139

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ID+  +  D AIRL   +  S L  R L        A+P YL     P +  +
Sbjct: 140 LGLTDERIDLVREGVDLAIRL-GTLGDSRLKLRPLGRSRRILVASPGYLDRRGRPQTPAD 198

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
           L++H  I            FN       T++ P G  R+      L+V+  L+  +    
Sbjct: 199 LERHEGIRM----------FNIAGSERLTLEGPDGTTRVVPFGGRLRVDHGLAAREAYRA 248

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+     ++V D   +  L RI+ D   PS  +            +++    F+
Sbjct: 249 GRGLGPAHLWLVDDLLTDGQLERILPDHALPSIPLSLLIAPERARIARIRLMVEFL 304


>gi|206580207|ref|YP_002237685.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569265|gb|ACI11041.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 296

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 141/290 (48%), Gaps = 14/290 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  +AR GSF+  A +  ++ SSI R+I  LE  +   LF R  RG+ LTE G  
Sbjct: 8   ENLSLFVEIARCGSFSAVARRHGVNPSSIMRKIDMLEAVMKAPLFTRSTRGIHLTEIGDA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V   L   + E+   + + +G LRI+      +  +   L EF   YPD+ + 
Sbjct: 68  LFTRAVGVLEALNDMRDEIVSLNEEVTGTLRISCLPTFAKLHIFPWLPEFKSHYPDVDLV 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +    S++  D A+R+ K +++SSL   K+      A A+P Y++    P    E
Sbjct: 128 LDLTEQLEIPSIERLDAAVRIGK-LKNSSLYATKIAHQTWIACASPRYIEQYGFPSGPTE 186

Query: 186 LDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+++  + D  P  +   +W   +D   GE R+  ++ N + ++++  + G GI  L
Sbjct: 187 LAGHHILDKYHD--PHSI---SWSRIIDTQGGEYRLY-MRCNDFEALLKAAISGLGIVFL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEAL-KNTGKLKAFRNFI 290
           P+++V  +     LV I +D       ++F    AL + T KL AF  F+
Sbjct: 241 PNWVVGQDIKAGRLVNIFDDPQQKVDDIHFL--RALPRMTPKLAAFLQFL 288


>gi|89899718|ref|YP_522189.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344455|gb|ABD68658.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 306

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 124/277 (44%), Gaps = 7/277 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSF  D + VF  VA   SFT AA+ L L ++S+S  +  LE  +G++L +R  R + LT
Sbjct: 1   MSF-LDHMLVFSRVAELLSFTQAADSLGLPKASVSNAVQQLENRLGVRLLHRTTRKVVLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G   +    +    ++  Q   Q +SS    G++R+  +  + +  +   L + L  +
Sbjct: 60  HDGQSFYERCKDALSDMDELQTMFQLQSSNALKGRIRLDMSTVVARQAVLPRLPDLLQQH 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +QI++    + +D+  +  DC +R  K +    LI R +  + M    +P Y+     
Sbjct: 120 PQLQIEISSTERRVDLVREGFDCVVRAGK-VTEPGLIARPVGDLRMANCVSPGYMARFGV 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+++L KH L+ +   +   +  F     V   I  P    + VN+  +    C+   
Sbjct: 179 PHSLEDLAKHTLVHYTATLGAKVSGFEC-TQVGEEIAIPMQGPITVNNAEAYQAACLASL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           GI  +P   V++      LV ++     P   +   Y
Sbjct: 238 GIIQVPFVGVRELIAQGQLVEVLTGWTAPPMPLSLVY 274


>gi|71282083|ref|YP_267547.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147823|gb|AAZ28296.1| transcription regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 299

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 21/304 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW+ +R F V A  G+ + AA+ L L+Q ++SRQ+S LETE+ I LF R  + L LT
Sbjct: 6   VNFDWNHIRAFLVTAEEGTLSAAAKALGLTQPTLSRQVSALETELCITLFERVGQRLVLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ----NLLQGNLKEFL 116
             G KL     E    +    +E   +    S K+  +  +  G+     +L   + +  
Sbjct: 66  SSGLKLL----EHARGMGDAALEFSLAVTGQSQKIEGSVIVSAGELTAAYMLPKIISKLR 121

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
              P I I++++ N+  D+    AD AIR   P Q + LI +K+    +  Y  P YL  
Sbjct: 122 REEPGIDIEVVVTNEASDLKRREADIAIRSFHPTQ-NDLIAKKIGEEVIWLYGTPEYLDQ 180

Query: 177 CREPLSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
                S  EL    +I F   + +   +    W       + +   S +     L  +  
Sbjct: 181 LPTIPSFSELKDIQIIGFDRSNSLTDVLNKQGW------QLSKKNFSLITSFQLLQ-LAL 233

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           C  G G+   P+ +    PNLVR  E  + P     V+    + L+ + +++   +FI  
Sbjct: 234 CKEGQGVIFYPEQMGDQEPNLVRAYEH-LGPVMKLPVWLVCHQELRTSLRVRRVFDFIAT 292

Query: 293 KARD 296
           +  D
Sbjct: 293 ELSD 296


>gi|254236795|ref|ZP_04930118.1| hypothetical protein PACG_02808 [Pseudomonas aeruginosa C3719]
 gi|126168726|gb|EAZ54237.1| hypothetical protein PACG_02808 [Pseudomonas aeruginosa C3719]
          Length = 317

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT A++QL+ + + +SR ++ LET +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTEAGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+GKL++ +   +GQ+ +   +  +   Y D+   L
Sbjct: 66  LLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+  D+  +  D AI +   +  S  I +++   +    A+P YL+    P    EL
Sbjct: 126 TMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPSEPSEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             H+ +    L+   +    WL   D P G+  +S      QVN   ++ +    G GI 
Sbjct: 186 ASHDCLR---LVSPVVPLDRWL--FDGPNGQEMVSIGASPFQVNVGDAMTEAIRSGLGIG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y   ++     LVR++         V+  YP       K+K +  ++
Sbjct: 241 ILPVYSAIEDLGKGTLVRVLPQHRLQQLNVFALYPSRQYLDAKIKTWVEYL 291


>gi|311108411|ref|YP_003981264.1| HTH-type transcriptional activator TtdR [Achromobacter xylosoxidans
           A8]
 gi|310763100|gb|ADP18549.1| HTH-type transcriptional activator TtdR [Achromobacter xylosoxidans
           A8]
          Length = 301

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 142/307 (46%), Gaps = 23/307 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L++   + R+G  + AA +L ++ +++S++++ +E  +G++L  R  R L+LT +G  
Sbjct: 5   NELQLVVELVRAGGMSAAARELGVTPAAVSKRLAQIEARLGVRLVNRSTRRLSLTAEGEV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++E     +      P G L++   +  G++ +   + EF   YP++ +Q
Sbjct: 65  YLENARRILGEIEDLDQLIASRQDSPRGLLKVNAPLGFGRSYIAPAIAEFAQAYPEVSLQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D   D  D A+R    +  + LI RK+        A+P YLK    P++  +
Sbjct: 125 LQLTDSPADFVQDAFDVAVRF-GDLPDTRLIARKIAPNRRLVCASPGYLKTHGVPVTPHD 183

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238
           L +H  I    ++ +    +  W  T  R     R   ++V   LS       + + + G
Sbjct: 184 LARHQCI----VLRQNEAAYGLWRFTKGR-----RSETVKVRGNLSSNDGEVTLTWGLAG 234

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FL 292
            GI    ++ +     +  LV+++ED   P   +Y  +PE    + K++ F +F+   F 
Sbjct: 235 LGILQRAEWDLARYLRSGRLVQVLEDYALPQADIYAVFPERHHLSAKVRVFVDFLVAYFR 294

Query: 293 KARDWKF 299
           K  D ++
Sbjct: 295 KGADSRW 301


>gi|300313922|ref|YP_003778014.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076707|gb|ADJ66106.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 308

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 129/295 (43%), Gaps = 14/295 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  SGS + AAEQL LS+  +SR ++ LE  VG +L +R  R L+LT  G++L 
Sbjct: 7   MQVFVTVVDSGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTPAGNELL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E  +  L      P G LRI  +    Q  L   + E+   YP + + L+
Sbjct: 67  PRCRQMLEYSEDMRHALDAPDETPRGLLRITASTSFAQTQLIQAVVEYGRRYPGVAVDLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D AIR+   ++  +LI R L        A P YL     P  +++L 
Sbjct: 127 ALDRTVNLVEERIDLAIRMTNRLE-PNLIARPLGVCRSIICATPDYLARHGLPRKVEDLA 185

Query: 188 KHNLITFGDLIPKCMEDFN---------WLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            HN +T    + + +  F+           A+  +P        +  N    ++Q  + G
Sbjct: 186 LHNCLTH-SYVGRSLWQFDPKKKKARSGRGASAAKPQSVAVGGSISANEVTVLLQAVLAG 244

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  +P Y V     +  LV+++ D       +Y  Y         L+   +F+
Sbjct: 245 VGIGHMPAYTVAPLVASGQLVQLLPDYEPLQLGMYGVYASRKHMPATLRTMLDFL 299


>gi|323530033|ref|YP_004232185.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323387035|gb|ADX59125.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 307

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 124/284 (43%), Gaps = 8/284 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F + A  GS T AAE+L LS ++ SR +S LE  +G++L  R  R L LT+ G + 
Sbjct: 6   QMEFFVLTADLGSLTRAAERLGLSNAAASRMLSALEDRLGVRLVERTTRRLWLTDAGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           HR  S +  +         E S +P G LR+  ++      +   L  F    P++++ +
Sbjct: 66  HRRCSALIAEAAEADAAAGELSARPRGVLRVTCSVSFALLHIAPWLPRFRERNPELRVHI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              N+  +      D A+R R+    S ++ +KL        A+P YL     P + + L
Sbjct: 126 EAANRYPNFIEAGIDVAVRTREHESDSGIMVQKLAQTRRVFAASPAYLARRGWPGTPEAL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
             H+L+ +        + +         + E RI+  L+ N    I      G GI + P
Sbjct: 186 ASHDLLVYA----LAADPYLLHLRKGDEVREVRIAPVLESNEGQVICAAARAGMGILIQP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            YIV+D+     LV ++ED   P   +   Y        K++ F
Sbjct: 242 LYIVRDDIVAGRLVPVLEDWQLPPLIINLAYQSRRHQPAKIRVF 285


>gi|293392983|ref|ZP_06637300.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291424517|gb|EFE97729.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 314

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 100/190 (52%), Gaps = 1/190 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T +G+  +
Sbjct: 7   MRIFTRIVELGSFSRAAERLQLPRATVSNTLKRLEQRLGVRLLIRTTRQVNVTHEGTLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   LE       +  ++PSGK+RI     L + ++   L +F   YP I + L 
Sbjct: 67  QRCIQLLGALEEADTLFSQQKLQPSGKVRIDMPHSLAREIVIPALGDFYQRYPQITLALG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  +D+  +  DC +R  +  +  SLI R++  +     A+P YL++   P SI +L 
Sbjct: 127 ANDSHVDLLREGVDCVLRAWE-TEDDSLIARQITAMPQLTCASPAYLQHYGVPQSIDDLH 185

Query: 188 KHNLITFGDL 197
            H+ + +  L
Sbjct: 186 HHHAVGYFSL 195


>gi|170690406|ref|ZP_02881573.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170144841|gb|EDT13002.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 293

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 114/241 (47%), Gaps = 9/241 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D+L  F+ V  +  F+ AA ++  SQS+IS+ ++ LE  +G+ L  R  R +TLT+QG 
Sbjct: 4   FDELNAFFAVVEASGFSAAARRIGESQSAISKAVNALEKRLGVALLRRSTRKVTLTDQGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +++    EL  ++++ SG +RIA     G+  +   +   L  +P ++I
Sbjct: 64  LYYDRMRPLVDEIQVADSELTSTTLEVSGLIRIAAPSTFGRLHVLPLIPGLLARHPGLRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +   D+  D  D AIR+  P++    + R++    +    +  Y +    P +  
Sbjct: 124 DMVLSDAVRDMVEDRIDLAIRV-SPVEEPDSVVRRVAATSLVCAGSRRYFEQHGVPRTPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + + ++        +W  A    P   P    L  NS  +I+   + G GI +
Sbjct: 183 DLADHNCLVYREMT-------DWPFAGPQGPFNLPVRGNLSSNSVETILAGVLAGVGIGM 235

Query: 244 L 244
            
Sbjct: 236 F 236


>gi|163761430|ref|ZP_02168504.1| putative LysR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162281425|gb|EDQ31722.1| putative LysR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 310

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 135/295 (45%), Gaps = 25/295 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  VAR GSF+ AA++L ++Q+++S QI  LE  +G +LF R  R +  TE   +
Sbjct: 10  NALRVFEAVARHGSFSRAADELGMTQTAVSYQIKLLEGHIGDQLFLRQPRQIVNTETAER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     + +  L       Q+++   S  L I ++     + L  NL  F L +P I ++
Sbjct: 70  MLPSVVKAFDFLGEAMALAQQTA---SETLEIHSSPTFASHWLARNLGAFQLEHPGIAVR 126

Query: 126 LILDNKDIDISMDYADCAIRLR---KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L+  +K  D + D AD AIR      P     L+ R      M + A    +    +P  
Sbjct: 127 LLRVSKITDFNRDPADVAIRWGVGPWPDLECQLLGR-FTYAPMLSPALAASIGGVNQPSD 185

Query: 183 IQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLS---IMQYCVLG 238
           + +L          +I    E + +W A +   I  P ++  + ++Y+         + G
Sbjct: 186 LLKL---------PIIGAQQEAWQHWFAAMGEAI--PDLTSHKQHNYIEQDLSGNAALAG 234

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
            G+A+L      D     R++    TPS     V+  YP + +NT K+KAFR +I
Sbjct: 235 QGVAMLNHIYYPDELASGRLVAPFHTPSGDDVGVWLVYPHSRRNTPKIKAFREWI 289


>gi|157147653|ref|YP_001454972.1| hypothetical protein CKO_03456 [Citrobacter koseri ATCC BAA-895]
 gi|157084858|gb|ABV14536.1| hypothetical protein CKO_03456 [Citrobacter koseri ATCC BAA-895]
          Length = 308

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 141/296 (47%), Gaps = 26/296 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +   G  + AA QL++S S++S+ ++ +E  +G  L  R  R +TLT+ G  L 
Sbjct: 10  LEFFIKIVDCGGLSEAAAQLNVSPSAVSKSLAAMEDTLGTTLIKRTTRSITLTDAGQYLF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++ ++ + T          P G+LRI  +I  G + L   + ++   YPD+ + + 
Sbjct: 70  NRATKLLNEFDETLNTTSGYYHSPQGELRITCSIAFGYSRLVNLVDKYRTQYPDVNLYID 129

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L++  ++++    D A+R+   P Q+ ++  RKLV I     A+P YL     P    EL
Sbjct: 130 LNDNFVNLNETDFDIALRISTAPPQNYAM--RKLVPIRWAWCASPGYLAKKGMPQRRVEL 187

Query: 187 DKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             H+ + +  L P  K  ++   L  +   +       +Q NS L +++  +   G+A L
Sbjct: 188 VNHDCLVYPGLTPVLKVADEQERLHQLKLHMP------IQANSSLVLLKSVLEDQGVAYL 241

Query: 245 PDYIVKDNPNLVRIMEDVITP----------SFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y++ D+     I ++ ITP          +  +Y  Y  +  +  K+++F +F+
Sbjct: 242 PTYLIGDH-----IQKEEITPLMLDGTITCETHALYALYFPSKYSNPKVRSFIDFL 292


>gi|330822744|ref|YP_004386047.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|329308116|gb|AEB82531.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 312

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 132/285 (46%), Gaps = 10/285 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F+++ R GS +  A +L L+  ++SR+++ LE  +G++L  R  R  +LT +G +     
Sbjct: 14  FHLLVRCGSLSATARELGLTTPAVSRRLALLEQRLGVQLLNRTTRRNSLTPEGEEYLVQA 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   +E  +  L+ S  +P G LR+  T+  G++ +   +  F   YP +QIQ  L  
Sbjct: 74  RRILADIEDVEHNLRRSMAEPLGLLRVNATLGFGRSHIAPVISRFCKTYPQVQIQFHLSV 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
               ++ D  D  IR  +P   + +I RK+        AAP YL+    P    +L +H 
Sbjct: 134 TPPPLTDDAFDVCIRFGEP-PDARVIARKVAANRRLLCAAPAYLERHGTPRVPADLARHQ 192

Query: 191 LITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDYI 248
            I+    I    + +  W  +  R     +++   V +   I + + + G GI +  ++ 
Sbjct: 193 CIS----IHHGQDAYGIWRLSAGRRTESVKVAETMVTNDGDIAVAWALDGHGILMRAEWD 248

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     +  L +++E   TP   +Y  YP   +   ++ AF +F+
Sbjct: 249 IDKYLRSGRLRQVLEQYSTPPADIYAVYPSRHQKARRVTAFVDFL 293


>gi|188584192|ref|YP_001927637.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347690|gb|ACB83102.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 302

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 137/292 (46%), Gaps = 10/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA SG F  AA  L++S  +++R ++ LE  +G +L  R  R + LTE G++  
Sbjct: 7   MRVFVRVAESGGFAGAARALNMSPPAVTRAVAALEAAIGARLLIRTTRSVKLTEAGARYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                ++ +L   +     S+  P+G L +   +  G+  +   + ++L  +  + ++ +
Sbjct: 67  EDCRRIFSELAEAEAAAAGSTATPTGTLTLTAPVQFGRLYVLPVVTDYLTHHSAVAVRTL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D  +R+   +  S L   ++ ++     AAP YL+    P + ++L 
Sbjct: 127 FLDRIVNMVEEGIDVGVRIGH-LADSGLTAVRVGSVRRVVCAAPRYLERHGMPTAPRDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H +I  G   P  + ++ +       +  +PR++C  V++ L+     V G GIA L  
Sbjct: 186 AHTVI--GSSNPGSLSEWRFGREQRTAVAVQPRLTCNTVDAALA---AAVEGWGIARLLS 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           Y V     +  L  ++E+       ++   PE  +   K++AF +    + R
Sbjct: 241 YQVAPALADGRLRLLLEEHEAAPVPIHVVSPEGRRAPAKVRAFVDLAATRLR 292


>gi|170736195|ref|YP_001777455.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818383|gb|ACA92965.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 334

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 94/185 (50%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +    SFT AA+ L +S+++ +R +  LE  +G+ L  R  R L  T +G   +
Sbjct: 8   MRIFTRIVEMNSFTRAAQALGISRATATRTVQELEAALGMPLLVRTTRALRPTPEGDAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   ++  +  ++ +++ PSG LR+     +   ++   L EF   +PD+++ L 
Sbjct: 68  RRCVSITADVDELEASIRGAALHPSGPLRVELPASVASTIVLPALGEFHARHPDLELTLA 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  +  D   D  DC+IRL   +  SSL+ R+L ++     A+P YL     P + ++L 
Sbjct: 128 VAGRAGDRIGDAIDCSIRL-GALPDSSLVARRLGSLERVTCASPAYLDRFGVPRTPEDLG 186

Query: 188 KHNLI 192
            H  +
Sbjct: 187 AHRAV 191


>gi|26990279|ref|NP_745704.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985229|gb|AAN69168.1|AE016550_10 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 301

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 128/259 (49%), Gaps = 10/259 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F     +  F+ AA +L L+ SS++R +  LE  +G  L  R  R ++LTE G++ +
Sbjct: 7   MKMFVATVDAQGFSAAARRLGLATSSVTRLVDALEASLGATLLNRSTRQVSLTEAGARYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    ++  L+     + +   +P G LR++  ++ G+ ++  +L  FL  +P +++ + 
Sbjct: 67  QRARGIFEALDEADASIADRGEEPVGVLRLSLPVEFGRRVIAPHLGPFLAQHPALELDID 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186
           L ++  D+     D +IRL  P  +  L+ R+L        A+P YL   REPL   QEL
Sbjct: 127 LSDRLDDLLDGRYDLSIRLGDPSPNDELVCRRLGGFQRWLVASPAYLAG-REPLQHPQEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
             H  + F        +   W  T  +   E  +S    ++   +++   L GSGIALL 
Sbjct: 186 LDHACLRF----RYGQKARPWRLTCGQDSLELDVSGPLRSANADMLRETALAGSGIALLA 241

Query: 246 DYIVKDN---PNLVRIMED 261
           D++V+++     L RI  D
Sbjct: 242 DWLVREDVLAGRLQRIFPD 260


>gi|33597090|ref|NP_884733.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33566541|emb|CAE37797.1| putative LysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 306

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 130/296 (43%), Gaps = 29/296 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F V AR  SFT AA++L ++Q ++S+Q+  LE  VG++LF R  +GL LTE G    
Sbjct: 11  LQAFEVAARHNSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLRIRQGLVLTEAGRSYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +       ++E   +EL     +  G L +   +  G   L   L  F  L PDI ++ +
Sbjct: 71  KKIRAGLGQIEAATLELIAHQGR-GGTLHLTAMLTFGARWLIPRLAAFRRLRPDIHVEFL 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE---P 180
              +  D S    D A+R  + I   S    ++ R +V +             C E   P
Sbjct: 130 PHRQGYDFSTPELDAAVRFGEGIWPGSGADYIVGRDVVPV-------------CSERLVP 176

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLG 238
              Q  D  +L+ +  L+        W    ++   + R  +   + + Y  + Q    G
Sbjct: 177 GGCQ--DAADLLAY-PLLHHTSAMEGWREWFEQAGCDTRRSLEGARFDQYSLLSQAAAAG 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G+AL+P  +++D   +  L   ++  I      Y CYPE   ++  L+AFR ++ 
Sbjct: 234 FGVALIPRCLIEDELRDGKLHVPIQLPIRARQGYYLCYPEQKASSPTLQAFRGWLM 289


>gi|87198895|ref|YP_496152.1| LysR family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134576|gb|ABD25318.1| transcriptional regulator, LysR family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 295

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 134/288 (46%), Gaps = 32/288 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  WD +     VA +G+F   A++L  S S +SR ++ LE  +G +LF+R  R +++T
Sbjct: 1   MSNRWDGIDEVVAVADTGTFVAGAKRLGTSTSHVSRAVARLEQSLGAQLFHRTTRAVSMT 60

Query: 61  EQGSKL----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           + G  L     R+ +E    +    ++LQ    +P G+LRI     LG+  +   ++ ++
Sbjct: 61  DTGRMLVDQFRRLIAERDEAI--AMLDLQG---EPQGQLRITCPTALGERFVAPIVRAYV 115

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP + + L + N+ +++  +  D AIR    +  S LI+ ++ T  +   AAP YL+ 
Sbjct: 116 QEYPKLSVDLDMSNRVVELVSEGYDLAIRT-GTLPDSRLIRTQIATRGIVTCAAPSYLEE 174

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLS 230
              P ++ +L  H      + IP   +   W   VD      RP G  R S     +  +
Sbjct: 175 RGTPQTVDDLLGH------ECIPATSD--VWRYRVDGEQRTIRPRGRWRCS-----NGAA 221

Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           +    V G G+  LP + V        LV ++++       ++  YP+
Sbjct: 222 VFDAAVAGMGLCQLPAFYVNRAIAAGQLVPVLDEFRPEDDPIWAVYPQ 269


>gi|290511746|ref|ZP_06551114.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289775536|gb|EFD83536.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 304

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 6/275 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS + AA  L++  +++SR I  LE+ +G++L  R  R LTLT+ G         +  ++
Sbjct: 17  GSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTDAGVDYVAAAQRILEEV 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E  + +      +P G+L I+     G+  +   + EF+  YP I+++L+L +++ D+  
Sbjct: 77  ENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPQIRVRLLLSDRNADLVS 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           D+ D A+R+   +  SS++  +L T+ + A A P  L    EP   ++L    +I     
Sbjct: 137 DHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQRPRDLAALPIIRIESP 195

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254
           +P     F      D+ I  P +  L V +  S      LG G+A L  Y   D   +  
Sbjct: 196 MPYRGWRFRAAERDDQLINLPPV--LSVTTPESAADAARLGVGVARLLHYQALDGLRHGE 253

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L  ++E+V      V+  Y        KL+ F +F
Sbjct: 254 LRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDF 288


>gi|326315288|ref|YP_004232960.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372124|gb|ADX44393.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 325

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 123/287 (42%), Gaps = 21/287 (7%)

Query: 6   DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+ F     VA  GS T AA    ++ + + R++  LE  +G+KL  R  R ++LT +
Sbjct: 2   DKLKAFESFVSVATRGSLTAAARAEGVAPAIMGRRLDALEEHLGVKLMVRTTRRISLTHE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS        +   +   +  +     + +G LRI      G+  +   +  F  L+PD+
Sbjct: 62  GSAFLEDCQRLLADVAEAEASVSVGGARATGHLRITAPAGFGRRHVAPLVPLFRDLHPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P  
Sbjct: 122 RISLNLSDRVVDLAGEGFDCAVRVGD-LPDSSLVSVRIADNRRLCVATPAYLERHGTPKH 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPR-------ISCLQVNSYLSIM 232
             EL +H  +    L     +   W   +   D P G P           L  +    + 
Sbjct: 181 PSELARHACLM---LSSDASQTRGWAFRMPAAD-PGGAPGDVVHVKPTGPLDCSDGQVLH 236

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
            +C+ G GIA    + V+       LV ++ED   P   +Y  +P A
Sbjct: 237 DWCLGGWGIAWRSTWEVEAEIAAGRLVAVLEDFAAPPNGIYVVFPHA 283


>gi|161521561|ref|YP_001584988.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352271|ref|YP_001947898.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221210885|ref|ZP_03583865.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans
           CGD1]
 gi|160345611|gb|ABX18696.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336293|dbj|BAG45362.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221169841|gb|EEE02308.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans
           CGD1]
          Length = 302

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 133/277 (48%), Gaps = 18/277 (6%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 87  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R  +P   + ++ R+L        AAP YL     P +  EL +HN I     I +  E+
Sbjct: 147 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGTPGTPHELTRHNCIG----IRQGDEN 201

Query: 205 FN-WLATVDRPIGEPR-ISCLQVNSYLSI------MQYCVLGSGIALLPDYIVKD---NP 253
           +  W  T  R  G  R    +++N  L+       +++ + G GI +  ++ ++D   + 
Sbjct: 202 YGIWRLTTGR--GAARHTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADG 259

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LV +++D  TPS  +Y  Y +  + + +++AF +F+
Sbjct: 260 RLVVVLQDYETPSADIYAVYAQRHQMSTRIRAFVDFL 296


>gi|78063910|ref|YP_373818.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971795|gb|ABB13174.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 314

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 140/295 (47%), Gaps = 12/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +  F  V  +GSF+ AA +L  ++S +S +I  LE  +   L  R  R L LT
Sbjct: 1   MMNKFTDMSTFVAVVEAGSFSEAARRLGTTKSIVSTRIQKLERRLACALLKR-GRSLQLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +      ++  +LE  + E+ E+    SG L+++  +      L   L  F  +YP
Sbjct: 60  DPGQRFFEQARQLLQELERIEGEVNEAGSSLSGNLKLSVPVTFVARYLAPLLSRFADMYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179
            + + +  D++  ++   + D AIRL  P+  SSL+ R  VT++ H   A+P YL+    
Sbjct: 120 ALCLDVEADDRLSNLQDGHFDAAIRL-GPLADSSLVARP-VTVNRHLICASPGYLERRGM 177

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P+   +L +H+ + + +  P  M    W   ++      R+   ++ +S   ++   + G
Sbjct: 178 PVHPDDLPQHDGLLYLNREPHGM----WSLPLEYEKQSFRVRVRMRTDSGFQLLAGAIAG 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+A+LP ++  +   +  LV ++ +       V   Y + ++ + K++A   F+
Sbjct: 234 LGLAILPTFLASEALVSGELVSVLPEYAPSGGQVNVVYRKTVRTSPKIQALVRFL 288


>gi|217422023|ref|ZP_03453526.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217394254|gb|EEC34273.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 315

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 128/288 (44%), Gaps = 20/288 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L R  +E    +E+T   L  ++        G +RI+ +  +G  +L   +      +P
Sbjct: 67  AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L L N+  D+    AD A+R+ +P Q + LI R +  I +  +A   YL  C  P
Sbjct: 123 ALTIELALTNRVQDLLRREADIAVRMTRPGQ-TQLIARHIGGIELGLHAHRDYLARCGTP 181

Query: 181 LSIQELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               EL +H LI        I +  E F      DR         L+ +S L+ +     
Sbjct: 182 RDAGELVRHALIGHDRPTAFIRQIAESFPGF---DRG-----AFALRTDSDLAQLALIRC 233

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           G+GI      + K +P LVR++         ++    E L+ + + +A
Sbjct: 234 GAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 281


>gi|123443533|ref|YP_001007506.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090494|emb|CAL13363.1| LysR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 298

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 18/289 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT  G      
Sbjct: 9   VFVTIVERGSMIAAAEALEMSRAMVTRYLAEMEQWAGARLLHRTTRKLSLTHAGEA---T 65

Query: 70  TSEVYHKLETTQ----IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   H LE  +    IE QE+  +  G LRI+ +  LGQ+ +   + ++L  YP + + 
Sbjct: 66  LARCRHMLEFAKDMDLIEGQENE-ELRGLLRISCSQSLGQSAVAIAVTDYLRRYPQVAVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L ++N+ +++  +  D A+R+   +   +LI R L   H    AAP YL     P +  +
Sbjct: 125 LQMNNRSVNLVEERIDLALRITNDLD-PNLIARPLSICHSVVCAAPSYLSAKGTPKTPPD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN +T+     K +  F+         +G      L  N  + ++   + G+GI L 
Sbjct: 184 LAVHNCLTY-SYFGKSLWHFDQQGVKSSVAVG----GNLSANESVVLLSGALEGAGITLQ 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y       +  L+R++ D    +  +Y  Y    +    L++  +F+
Sbjct: 239 PSYSAAPYIASGELIRLLPDYQPQAMGIYGIYTSRRQMPATLRSMLDFL 287


>gi|121593060|ref|YP_984956.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120605140|gb|ABM40880.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 336

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 14/242 (5%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  VAR  +F  AAE+L L+QS++SRQI  LE EVG+ LF RH R + LT  G +L R
Sbjct: 27  RAFLAVARHLNFRAAAEELALTQSAVSRQIQALEDEVGVPLFLRHTRAVELTSAGGQLQR 86

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +    +++     +++++ + S  + I T        L   ++EF    PDI I++  
Sbjct: 87  AVAPALERMDAAVRLVRQTAGRKS--VAITTWASFASMWLIPRMEEFQRDNPDIDIRIDA 144

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELD 187
            +  +D+     D A+R   P   ++  QR L    +   A+P +L N   P+ +  ++ 
Sbjct: 145 TDTIVDLETADVDLALRSSVPGTQAAGAQR-LFGEQLAVVASP-WLLNSMPPIRTPADVA 202

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSGI 241
           +  LI  GD     M  F W+ T  R      +  LQ   +L       I+Q  + G G+
Sbjct: 203 QFTLIEAGDA--HRMPYFEWI-TWRRWFELHGLGRLQPKRWLYFNYAQQIVQAALAGQGL 259

Query: 242 AL 243
           AL
Sbjct: 260 AL 261


>gi|107025529|ref|YP_623040.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|170737440|ref|YP_001778700.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105894903|gb|ABF78067.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|169819628|gb|ACA94210.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 364

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 142/304 (46%), Gaps = 13/304 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  + R GSFT AA+ L +S  + SR +  LE  +G+ L  R  R + LT
Sbjct: 1   MEITLQAMSIFTYIVRVGSFTAAAKLLGISAGTASRLVRNLENHLGVTLLQRSTRCVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G++       V  ++E  +  L  +     G+L +    ++   +L   + EF L +P
Sbjct: 61  TEGAQYFEHCERVLGEIEEVKAHLAGARDVARGRLSVDIDQEIAHTVLP-LIPEFRLTFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L +      +     DCAI +  P+  SSL  R++   +    A+P YL     P
Sbjct: 120 EVELRLEIGGDPGGLVEHGIDCAIAV-GPLPDSSLRGRRIGDFNAVTVASPAYLSRRGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
             + +LD+H++I +       + DF +   VD   GE  +     + V+   S +QY V 
Sbjct: 179 HELGDLDRHDIIHYSPRRFGPVRDFRY--CVDG--GEVSLKFPERISVSDARSAVQYAVE 234

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GIA +   +V +   N  LV ++ +    S  ++  Y +       ++AF +++ ++ 
Sbjct: 235 GIGIAQVCGRMVVNEIANGRLVSLLAENRPTSLQIFALYVDQRYIPRSIRAFIDWLEIQL 294

Query: 295 RDWK 298
           R W+
Sbjct: 295 R-WR 297


>gi|224825387|ref|ZP_03698492.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602308|gb|EEG08486.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 301

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 133/292 (45%), Gaps = 10/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  + + GS T  A++L ++  ++SR++S LE  +G++L  R  R L LT +G
Sbjct: 3   DLSDLAFFTRLMQCGSLTATAQELGITPPAVSRRLSALEKRLGVRLLNRTTRTLALTHEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +   L   + EL  S  +P G LR+  T+  G+  +   +  F+  YP  +
Sbjct: 63  EHYLSQGQRILDDLAELERELTGSQSEPQGLLRVNATLGFGRRHVAPAVSAFVRTYPKTE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL L ++   ++    D +IR  +P + + L+ RK+V       AAP YL       + 
Sbjct: 123 VQLQLSDRMPALTGGAFDVSIRFGEPPE-ARLVARKIVANRRVLCAAPSYLDALAPVTAP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +EL ++  I    ++ +  E +  W L    R         L  N   + + +C+ G GI
Sbjct: 182 RELSRNACI----VVRENQEAYGIWQLHAGSRQETVKVGGALATNDGETAVNWCLEGHGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L   + V     +  L +++ +       ++  +P  L  + K++AF +F+
Sbjct: 238 LLRSLWDVAPYLQSGRLRQVLPEWQGAPADIWALFPPRLNLSAKVRAFVDFL 289


>gi|222832630|gb|EEE71107.1| predicted protein [Populus trichocarpa]
          Length = 249

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 11/242 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  +   GSF  AA+QL +S + ++R ++ LE+ +G +L  R  R L+LT+ G   
Sbjct: 6   SMRVFAKLVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTDAGETY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  S++   +E  +  +   S   SG LR+ T +  G +LL   L+ F  LYPD+   +
Sbjct: 66  LQRCSQILEDVEEAESIVAARSQSLSGTLRLVTPVMFGLHLLPQILERFQQLYPDVVFDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ IDI  +  D  + L      S L+ R L++  +   A+P YL+      +  +L
Sbjct: 126 QLSDRMIDIVEEGRDVGVMLSDLGLGSHLVARPLISAEVILCASPGYLREHPPLRNAHDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGIA 242
             H  I     +P    +  W  T+  P GE     R   L  N+ L+  Q  +   GIA
Sbjct: 186 SNHRAIAMR--LPNA--EHEW--TLSGPEGEVTVPIRPGLLCSNAELA-HQAALTNMGIA 238

Query: 243 LL 244
           +L
Sbjct: 239 ML 240


>gi|116693290|ref|YP_838823.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116651290|gb|ABK11930.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 380

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 142/304 (46%), Gaps = 13/304 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  + R GSFT AA+ L +S  + SR +  LE  +G+ L  R  R + LT
Sbjct: 17  MEITLQAMSIFTYIVRVGSFTAAAKLLGISAGTASRLVRNLENHLGVTLLQRSTRCVRLT 76

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G++       V  ++E  +  L  +     G+L +    ++   +L   + EF L +P
Sbjct: 77  TEGAQYFEHCERVLGEIEEVKAHLAGARDVARGRLSVDIDQEIAHTVLP-LIPEFRLTFP 135

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L +      +     DCAI +  P+  SSL  R++   +    A+P YL     P
Sbjct: 136 EVELRLEIGGDPGGLVEHGIDCAIAV-GPLPDSSLRGRRIGDFNAVTVASPAYLSRRGVP 194

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
             + +LD+H++I +       + DF +   VD   GE  +     + V+   S +QY V 
Sbjct: 195 HELGDLDRHDIIHYSPRRFGPVRDFRY--CVDG--GEVSLKFPERISVSDARSAVQYAVE 250

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GIA +   +V +   N  LV ++ +    S  ++  Y +       ++AF +++ ++ 
Sbjct: 251 GIGIAQVCGRMVVNEIANGRLVSLLAENRPTSLQIFALYVDQRYIPRSIRAFIDWLEIQL 310

Query: 295 RDWK 298
           R W+
Sbjct: 311 R-WR 313


>gi|115359127|ref|YP_776265.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284415|gb|ABI89931.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 301

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 95/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT+ G  
Sbjct: 6   DGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLTDDGQA 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +LE  + +L     +  GKLR++  +  G + +   + +    YP ++I 
Sbjct: 66  YYDRCVRALSELEAAEADLDCGRNEARGKLRLSVPLAFGHHCVMPIVLDLARTYPHLRID 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + ++ +D+  +  D AIR+     S+SL  R+L T +    AAP YL     P S+ +
Sbjct: 126 VSITDRFVDLVEEGIDLAIRIGTLADSTSLAVRRLGTQYGSLGAAPSYLARYGMPQSLDD 185

Query: 186 LDKHNLITF 194
           L  H  I +
Sbjct: 186 LRNHRTIAY 194


>gi|26988591|ref|NP_744016.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24983365|gb|AAN67480.1|AE016374_12 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 317

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 16/254 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    +  T  G+ 
Sbjct: 8   DQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDNLESAVGSRLFTRSTHAVRATPAGNA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL+ YP + +Q
Sbjct: 68  FAERARRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVQ 127

Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+   +    D  +R   P+  + L+   L  +   A A+P YL +   P  
Sbjct: 128 LRLIDSFVDLQGSHLGEVDLVLRA-GPLADTRLVATPLAYMVRIACASPAYLASRGIPTC 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVL 237
             EL  H+ + +  L P     F W  +V    G+ R+       +  N+  +++   + 
Sbjct: 187 PSELPGHDGLDWDGLAPP----FAWRFSV---AGQTRLYRPARMRMAANNAETLLFGALA 239

Query: 238 GSGIALLPDYIVKD 251
           G GIA LP +++ +
Sbjct: 240 GLGIAHLPTWLISE 253


>gi|107029171|ref|YP_626266.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116687042|ref|YP_840289.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105898335|gb|ABF81293.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652757|gb|ABK13396.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 301

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 17/281 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR GSF  AA      ++++SR+++ LE  + ++LF R +RG+ LT++G  L+  T
Sbjct: 9   FNLVARHGSFGEAARVAARPKATLSRRVAELENSLSLRLFERGSRGVKLTQEGRALYERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  +   +   S +P G+LRI+  +   Q  +   +  F L YPD+++++  ++
Sbjct: 69  GALLAELADSASAIAAGSERPRGRLRISAPMLFSQFAMGRLVATFALRYPDVRLEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  IR+  P    SLI R ++   +   A P   +              +
Sbjct: 129 RPVDMIEEGYDLVIRV-NPDPDESLIGRVILRDRLVVVAKPGLARPG-----------GD 176

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN--SYLSIMQYCV-LGSGIALLPDY 247
           + T    + +   D      V  P G  RI    V   S LS+++  V LG G A LP  
Sbjct: 177 VPTPAPAVVRGANDTRTAWEVTGPAGTARIPVEPVARLSSLSMVRDTVRLGLGAACLPIS 236

Query: 248 IVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286
           +V  +     ++   DV      ++  YP     + ++ AF
Sbjct: 237 LVSRDLAAGTLVSWGDVPGSDIALWALYPSRRLLSARVSAF 277


>gi|116051562|ref|YP_789600.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586783|gb|ABJ12798.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 306

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+VF   + SGS + AA QL +S +  S  +  LE+E+ ++LF R  R L LT +G 
Sbjct: 4   YDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +        LE  +  LQ    + +G L+++   D G+NLL   L EF   YP + +
Sbjct: 64  AFLQHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           +L+L ++  D+     D AIR   P   SSL+   L   +     AAP YL    EP   
Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGAPA-DSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182

Query: 184 QELDKHNLITF 194
            +L +HN + +
Sbjct: 183 DDLREHNCLLY 193


>gi|326204107|ref|ZP_08193968.1| transcriptional regulator, LysR family [Clostridium papyrosolvens
           DSM 2782]
 gi|325985874|gb|EGD46709.1| transcriptional regulator, LysR family [Clostridium papyrosolvens
           DSM 2782]
          Length = 292

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 131/251 (52%), Gaps = 20/251 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +++  ++FY  A + SF+ AA +L+++QS++S+ +  LE ++G+ LF+R +R + LT
Sbjct: 1   MDINFELYKIFYQCAENKSFSEAARKLYITQSAVSQSVKNLEKQLGVTLFHRKSRNIQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L    S+ Y+ L+T + +LQE     +G++RI  +  + +  +   +K+F  +YP
Sbjct: 61  NEGELLFSYASQAYNFLKTAEEKLQEFEGLTAGEIRIGVSDSICKYFIMPYIKKFGQMYP 120

Query: 121 DIQIQLILDNKDIDISMDY-----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           +I +++I  N+     +D       D AI    P+          +++    + A    K
Sbjct: 121 NIMVKVI--NRTTPQLLDVLKGGLIDIAISTL-PVNQDMFDAVSFISVQ-DIFVASDRFK 176

Query: 176 NCRE-PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSI 231
             +E  +++QEL+K+ L+           D +   +VDR      ++C   +++ S   +
Sbjct: 177 ELKEREITLQELNKYPLVLL-------QSDSSTRKSVDRFFQSYGLTCSPEIELESLDLL 229

Query: 232 MQYCVLGSGIA 242
           +++  +G+G+A
Sbjct: 230 VEFAKIGTGVA 240


>gi|170696917|ref|ZP_02888013.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170138091|gb|EDT06323.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 303

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 117/254 (46%), Gaps = 19/254 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   GS T  A  L  + S +SR I+ LET +G++L  R  R L+LTEQG    
Sbjct: 11  VEAFVTVIEKGSMTAGAVALASTPSVLSRAITRLETRLGVQLLRRSTRRLSLTEQGRLYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +   +  ++  +  +Q      +G +R++     G   L   L++F   +P+++++L 
Sbjct: 71  EQSRAAFLLIDDAERAIQGHGGTLTGHVRLSVPTTYGHYRLPPLLRQFTQQHPEVRVELN 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+++D+  +  D AIRL + +  S L+ RKL    +   A+P Y+     P  + +L 
Sbjct: 131 IANRNVDLVAEGFDLAIRLGE-LPDSGLVARKLEDAALCLVASPEYVARAGMPEGVADLA 189

Query: 188 KHNLITF-----GDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            H  + F     G + P       +D +WL         P  +    +  L ++     G
Sbjct: 190 HHLCLPFMLPSSGRIAPWVFRDGGQDIDWL---------PPSNVAVSDDVLGVVSMAQSG 240

Query: 239 SGIALLPDYIVKDN 252
           +GI    D+IV+D 
Sbjct: 241 AGICQTYDFIVQDR 254


>gi|107103412|ref|ZP_01367330.1| hypothetical protein PaerPA_01004482 [Pseudomonas aeruginosa PACS2]
          Length = 317

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSFT A++QL+ + + +SR ++ LET +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTEAGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+GKL++ +   +GQ+ +   +  +   Y D+   L
Sbjct: 66  LLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+  D+  +  D AI +   +  S  I +++   +    A+P YL+    P    EL
Sbjct: 126 TMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPSEPSEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSGIA 242
             H+ +    L+   +    WL   D P G+  +S      QVN   ++ +    G GI 
Sbjct: 186 ASHDCLR---LVSPVVPLDRWL--FDGPNGQEMVSIGASPFQVNVGDAMTEAIRSGLGIG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y   ++     LVR++         V+  YP       K+K +  ++
Sbjct: 241 ILPVYSAIEDLGKGTLVRVLPQHRLQQLNVFALYPSRQYLDAKIKTWVEYL 291


>gi|26989254|ref|NP_744679.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24984100|gb|AAN68143.1|AE016446_3 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 299

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 122/258 (47%), Gaps = 10/258 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  VA++GS + AA  L L+ S++SR ++  E  +G +L  R  R LTLT +G   
Sbjct: 9   EMEIFAKVAQAGSLSAAARALGLTPSAVSRILARTEQRLGTRLLLRTTRALTLTPEGEAY 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    V   +   +  + +  V P G+LR++  +   +  +   L  F   YP + + L
Sbjct: 69  LRGARRVLADMLEVEEAITDQGV-PRGRLRVSAALGHARLTVVPLLAAFSARYPQVLVDL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  DI    AD A+R    +  SSL  R +        A+P YL+    PL  ++L
Sbjct: 128 TLSDEVADILGGQADVALRFGH-LPDSSLSARAIGETGQVVVASPEYLQRYGTPLEPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + F     + M D  W    D      ++   ++ +S  ++ Q   LG+G+A + 
Sbjct: 187 ARHNCLRFN--FRRAMPD--WPFHRDGHTFSLKVKGNIECSSGEALAQLARLGAGVARIG 242

Query: 246 DYIVKD---NPNLVRIME 260
            + V D   N  LV ++E
Sbjct: 243 TFTVADDLANGQLVPLLE 260


>gi|332561045|ref|ZP_08415363.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332274843|gb|EGJ20159.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 315

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 14/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++AR  SF+  A+ L LS S++SR+++ LE  +G++L  R  R ++LT +G   +
Sbjct: 6   LSFFVMLARRESFSATAQDLGLSASAVSRRLARLEDRLGVRLLNRTTRKVSLTSEGEAYY 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +  L +   +P+G LRI  T+  G+  L   +  F  ++P +++QL+
Sbjct: 66  GAALRLLDEIADLEHNLSQGRDRPAGLLRINATLGFGRTHLAPAIARFRRIHPAVEVQLL 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +++  +  D  IR   P     ++ R L        AAP YL+    P S+ +L 
Sbjct: 126 LTDAPLNLVEEGIDLGIRFGAP-PFGRMVMRLLQRNRRFLCAAPSYLEARGVPQSLTDLQ 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242
           +H+ I    ++ +  + ++     D  IGE   S      L  N     + + + G GI 
Sbjct: 185 QHSCI----VLRQDHDAYDVWRFDD--IGEASPSAKVSGELSTNDGEIALAWVLDGQGIM 238

Query: 243 LLPDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L  ++ +  +     +R++      +  ++  YPE    + K++ F + +    RD
Sbjct: 239 LRSEWDIAQHVREGRLRLLLPHYRQTANIHALYPERHNLSAKVRVFADHLAAHVRD 294


>gi|259415005|ref|ZP_05738928.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259349456|gb|EEW61203.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 317

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 132/296 (44%), Gaps = 12/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D D+L  F  V   G+ T  A +L+LS+S IS++IS LE E+G  LF R+A  +T T
Sbjct: 15  MRYDLDQLETFLAVLELGTVTATAARLNLSKSVISKRISDLELELGTALFRRNAGRITPT 74

Query: 61  EQGSKLHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           E   +           L T  +      + +  G L I   +  G   L   L  F    
Sbjct: 75  ESAQRFAERIRPALADLRTAAEAAAWGGAEQLRGTLSITAPMSFGTLHLSPILATFAARN 134

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + +++  D++ ID++ D  D A+R+  P++ S+L+ RKL      A A+  +L     
Sbjct: 135 PGLSLRIEYDDRIIDLARDGVDLAVRI-GPLRDSALMVRKLCDDVSVACASSDFLNRHGR 193

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLG 238
           P + Q+L     I +  L    +    W   V R    P +  +  VN+  ++    +  
Sbjct: 194 PETPQDLTGLPAIGYSHLPNSEL----WRFKVGRRDLRPAVKEIATVNNGEAMRDLAIAR 249

Query: 239 SGIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G A+LP +I    + D   L R++ D  T    +   +P+      KL+   +F+
Sbjct: 250 LGFAMLPGFIALPAIADG-KLERVLPDAATRDMPISAVWPQVQPLPAKLRTLIDFL 304


>gi|163858300|ref|YP_001632598.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262028|emb|CAP44330.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 290

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 127/284 (44%), Gaps = 15/284 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR F+ +A +GS + AA  L +  ++++R+I+ LE  +G+ L  R  R  TLT  
Sbjct: 1   MNWDDLRHFHTLATAGSLSAAARMLAVEHATVARRIAALEASLGMLLVDRRGRRWTLTAD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++  + +++ H+    Q     +  + SG + ++    L    L   L E    +P +
Sbjct: 61  GERIAAIAAKMDHEARAVQRRADSARSELSGTVSVSAPPALAAQALTAPLVELQQRHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I++I + +   +    AD AIRL +P +   L   KL  +    YA+P YL +      
Sbjct: 121 TIRIIGEARAASLDRAEADLAIRLSRP-EKGDLTIAKLGKVDFRLYASPAYLAHT----- 174

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241
             E D   + + G L     +     A ++R     R+      S L I Q     G+GI
Sbjct: 175 -SEADWRFIGSDGPLAKAPQQ-----AALER-YAAGRVFAFYSGS-LDIQQAAARSGAGI 226

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           A LPD++   +  LV +  +    S  ++      LK    +KA
Sbjct: 227 AALPDFMGMTDAALVPVTPETRLVSRDIWLVVHTDLKRAAAVKA 270


>gi|218530021|ref|YP_002420837.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218522324|gb|ACK82909.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 310

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 12/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F   A +GSF+ A   L LS S IS +I  LE  +G  L  R  R + LTE G  
Sbjct: 5   ESVRIFMRAAETGSFSAAGRSLRLSPSVISYRIQTLEEHLGCLLLTRTTRRMNLTEAGRV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +E  +  ++     P G L++   + LG+ ++   +  F   +P+  + 
Sbjct: 65  FYDRCLDIAASVERAEKSVETQGAAPRGTLKVTAPLTLGRRVVAPLIPAFRERHPEADVH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+  +  D A+RL + ++ SS   RK+  I     A+P YL     P S  +
Sbjct: 125 LRLSDHLLDLVQEAVDVAVRLAQ-VRDSSFTLRKVADIERILCASPGYLAEHPAPESPAD 183

Query: 186 LDKHN--LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H   L+ F        E F W L   D  +  P    +  +    + ++ + G GI 
Sbjct: 184 LIDHACLLLRF-----PGSEQFRWSLRDGDEVVTLPVAGPIDADDGDVLTEWALQGQGIV 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L P + V     +  LV ++        T+   YP       + K F
Sbjct: 239 LKPVFEVAPYLADGRLVPVLPGAPPTPVTLGVVYPSRKMLPARAKTF 285


>gi|50086563|ref|YP_048073.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49532537|emb|CAG70251.1| putative transcriptional regulator; putative transcriptional
           activator [Acinetobacter sp. ADP1]
          Length = 302

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 15/264 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +GS   AAEQL  + S +SR ++ LE ++ + L  R  R + LT++GS 
Sbjct: 6   EELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLTQEGSL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   L   +  L +S    SG +RI +      ++L   +++F+ LYP I+I+
Sbjct: 66  FLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYPHIEIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ ID+     D AIR    +  SSL  R +    ++  A+P YLK    P   QE
Sbjct: 126 LNSNDQVIDLLQHKTDVAIRF-GALHDSSLHARLICKSRLYIVASPDYLKKAGTPSHPQE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L +H L+ F   +        +L T    I +  I+    ++ +S  ++ Q  + G GIA
Sbjct: 185 LFQHQLVGFSKPV--------YLNTWPLKIEDEYITVHPQIKASSGETVRQLTLRGHGIA 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVI 263
            L +Y +  +    +L+ + ED I
Sbjct: 237 RLSEYEIWQDLQAGSLIALFEDQI 260


>gi|148549059|ref|YP_001269161.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513117|gb|ABQ79977.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 317

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 16/254 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    +  T  G+ 
Sbjct: 8   DQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDNLESAVGSRLFTRSTHAVRATPAGNA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL+ YP + +Q
Sbjct: 68  FAERARRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVQ 127

Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+   +    D  +R   P+  + L+   L  +   A A+P YL +   P  
Sbjct: 128 LRLIDSFVDLQGSHLGEVDLVLRA-GPLADTRLVATPLAYMVRIACASPAYLASRGIPTC 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVL 237
             EL  H+ + +  L P     F W  +V    G+ R+       +  N+  +++   + 
Sbjct: 187 PSELPGHDGLDWDGLAPP----FAWRFSV---AGQTRLYRPARMRMAANNAETLLFGALA 239

Query: 238 GSGIALLPDYIVKD 251
           G GIA LP +++ +
Sbjct: 240 GLGIAHLPTWLISE 253


>gi|331658454|ref|ZP_08359409.1| LysR-family transcriptional regulatory protein [Escherichia coli
           TA206]
 gi|331054430|gb|EGI26446.1| LysR-family transcriptional regulatory protein [Escherichia coli
           TA206]
          Length = 197

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 10/200 (5%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           + F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G ++  
Sbjct: 4   KFFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAGERIIA 63

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  +LE     L + +  PS  +R++      ++L+   LK FL  YP+I ++L++
Sbjct: 64  CLEPRIDELERELESLIQLNGAPSWNIRLSAGEHAARSLVWPKLKSFLREYPEINVELVV 123

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           DN  +DI     D  IRL + +    +  R    + M    +P Y      P +  EL  
Sbjct: 124 DNGFVDIVDGRFDAGIRLGESVDKDMIAVRIGPDMRMAMVGSPAYFAANPAPETPHELQN 183

Query: 189 HNLITFGDLIPKCMEDFNWL 208
           H          +C+ +  W+
Sbjct: 184 H----------RCINNVTWI 193


>gi|254523510|ref|ZP_05135565.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721101|gb|EED39626.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 294

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 125/296 (42%), Gaps = 25/296 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SF  A  +L LS S++S  I  LE  +G+ LF+R  R + LTE G +L 
Sbjct: 9   LAAFAAVARHRSFRRAGAELGLSTSAVSYAIRALEERLGVGLFHRTTRSVALTEAGQRLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++     E+ +    P+G LRI  T       L   L  FL  +PD++++L 
Sbjct: 69  ERLQPALGQVHDALEEMNQFRAAPAGLLRINATRAAVATQLGPRLARFLRAHPDVRVELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHYLKNCREPL 181
            ++  +DI  +  D  +RL +       +   +V + M          +P YL+    P 
Sbjct: 129 ENDGLVDIVAEGYDAGVRLHE------FVPEDMVAVPMGPPLRGLIVGSPDYLRRHPAPQ 182

Query: 182 SIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             ++L  H  I F    G L     E       +D P        L +    +++   + 
Sbjct: 183 HPRDLAAHECIRFRFASGHLYKWQFERAGQALEIDVP------GRLTLGEQGTVVGAVLD 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+A + +   +   D+  +V +++D   P       YP+  +  G L+AF + +
Sbjct: 237 GIGLAYVLEDTARPYIDSGQMVAVLKDWSEPFAGFALYYPKQRQMPGALRAFVDML 292


>gi|109898628|ref|YP_661883.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109700909|gb|ABG40829.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 302

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 99/189 (52%), Gaps = 2/189 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F   A+ GS +  A ++ LS + +S  +  LE ++G+ LF R  R L LT++G +  
Sbjct: 7   LRIFCETAQQGSLSACARKMDLSPAVVSASLKRLEADLGVLLFIRSTRNLRLTQKGEQFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +    L+    ++     + SG ++++   DLG+NLL   L EF+ L+  ++I+L 
Sbjct: 67  RHCIDALSILDEATTQMHSEDTELSGVIQLSAPSDLGRNLLLPWLDEFMTLHQKLEIRLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186
           L +   D+     D A+R  KP + S  I   +   ++    A+P Y++    P ++QEL
Sbjct: 127 LSDSPADLYSQPVDLALRYGKP-KDSGFIAIPVAANNVPVLCASPSYIEQFGSPNTLQEL 185

Query: 187 DKHNLITFG 195
            +HN +  G
Sbjct: 186 TQHNCLCHG 194


>gi|56697065|ref|YP_167428.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678802|gb|AAV95468.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 300

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 134/296 (45%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD ++VF  VAR  S + A  QL L  +++ R+I+ LE+     LF +  +G TLT
Sbjct: 1   MEPHWDDMKVFLAVAREESLSGAGRQLKLDPATVGRRIARLESAYDTPLFAKSPQGYTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L     +    + +    L  ++   +G++RI         LL     +     P
Sbjct: 61  AAGERLLSHGEQAEAAMRSASEALAGTTEGLTGQIRIGAPDGSANYLLPQVCAQISDENP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ IQ++   + I++S   AD A+ +  P     L+Q K+    +H  A+  YL+     
Sbjct: 121 ELDIQILALPRIINLSRREADMAVTVSAPTAGHLLVQ-KITDYKLHMVASRRYLRGHPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H +I +   IP  + D       D  IG  R++ L  NS    ++    GSG
Sbjct: 180 ETLADLRGHRMIGY---IPDMIFDRELDYLND--IGIERVA-LASNSVSVQLRQAGHGSG 233

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I +  D+ +  + NL RI+ D ++ + + Y    +  + + +L  F   +    RD
Sbjct: 234 ICVAHDFTLPFHGNLRRILTDQVSLTRSFYLVRHQGDQRSERLNRFAEALTRGIRD 289


>gi|330810350|ref|YP_004354812.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378458|gb|AEA69808.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 297

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 7/247 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  VA+ GS + AA  L L+ S++SR I+  E  +G +L  R  R +T T +G   
Sbjct: 9   EMSVFATVAQEGSLSAAARALGLTPSAVSRIIARTEQRLGTRLLLRTTRAITFTAEGEAF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +   +   +  + +  V P G+LR++  +  G+  +   +  F   YP+I + L
Sbjct: 69  LRGARRILADMAEVEEAIADQGV-PKGRLRVSAALGHGRLAIVPLVAAFSARYPNIVVDL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +DI    AD A+R    +  S L  R++        A+P YL+    P   ++L
Sbjct: 128 TLGDEVVDILGGQADVAVRFGH-LPDSPLTARRIGDTGQVVVASPDYLRRHGTPEEPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + F         + NW    D      ++S  ++ +S  ++ Q   +G+GIA + 
Sbjct: 187 LRHNCLRFN----FRRAEPNWPFIRDGREFSLKVSGNIECSSGEALAQLARVGAGIARIG 242

Query: 246 DYIVKDN 252
           ++ V ++
Sbjct: 243 EFTVSED 249


>gi|289662419|ref|ZP_06484000.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 310

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 130/274 (47%), Gaps = 21/274 (7%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           L + +S +SR+IS LET++G++L  R  R   +T+ G+ +HR    +  + +  +  +  
Sbjct: 3   LGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVGTSVHRHAQTMLAEAQAAREVVDR 62

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
            S +P G +R++  + L Q  L   L +FL  YP +++QL + N+ +D+  +  D A+R+
Sbjct: 63  LSAEPRGLVRVSVPVSLAQIQLPKLLPQFLAKYPKVRLQLNISNRRVDVINEGYDIALRV 122

Query: 147 RKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
           R  +    SL+ R    +     A+P YL     P    EL  H  ++  +      ++ 
Sbjct: 123 RSRLDDDGSLVMRSFGQVQELLVASPKYLDRTGRPKDPSELANHTTMSTSE------DEA 176

Query: 206 NWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSGIALLPDYIVKDNPNLVRIM 259
           +    +  P GE R   LQ    L+   + +L      G GI +LP+ +  +    VR  
Sbjct: 177 HQRWELHGPNGEMRRVDLQ--PRLAGFDFPLLQSMARDGFGITMLPETVCAEA---VRSG 231

Query: 260 E-DVITPSFTV--YFCYPEALKNTGKLKAFRNFI 290
           E +V+ P +++    C+       G L A R FI
Sbjct: 232 ELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFI 265


>gi|238894241|ref|YP_002918975.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546557|dbj|BAH62908.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 293

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 126/250 (50%), Gaps = 15/250 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD  R+F  +AR+G+ + AA+++++  +++SR++  LE  + + LF RH  G  LT+ 
Sbjct: 5   FHWDDARIFLAIARAGTLSGAADKMNMGIATLSRRLDRLEQALNVPLFSRHQSGYRLTDD 64

Query: 63  GSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G   L R  +  Y  L   +    +  V  +G +R+AT+ +L  + +  +LK  L  YP+
Sbjct: 65  GEALLARAEALEYAGLAFGEAAQLQGHV--AGVVRLATSDNLATHFILPSLKGLLDHYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++++   + +++    AD AIR+ KP ++  L  ++L T+    Y A   L    + L
Sbjct: 123 LRVEVLSGVQPVNLHRRDADLAIRMVKP-EAGHLTLKRLGTVGFGVYGAADCLVGA-DGL 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ E D          +P       W+    R  G P   C ++ N+ ++ +     G G
Sbjct: 181 SLSEADFVGWPETHQHLPAA----QWITRTLR--GRP---CKVEANTLVAQVSAVSAGLG 231

Query: 241 IALLPDYIVK 250
           + +LP ++ +
Sbjct: 232 LGVLPHFMAR 241


>gi|224823554|ref|ZP_03696663.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224604009|gb|EEG10183.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 308

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 136/300 (45%), Gaps = 17/300 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A+  L + +S +SR+++GLE ++G++L  R  R L LTE G
Sbjct: 3   DLNDLLFFAKVVEHGGFNAASRVLGIPKSRLSRRVAGLEEQLGVRLLQRTTRKLALTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +     +  + +  +  +   + +  G +R++    L +  L   L  F+  +P ++
Sbjct: 63  ASFYDHCQAMLAEADAAEESVSRVTAEARGLIRVSCPELLAKTELGPLLPRFMQQHPQVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  D  D AIR+R  I+ S+SL+ R+L        A+P  L+    P S
Sbjct: 123 LLLEATNRRVDLIEDGIDVAIRVRSVIEDSASLVARRLGIARQVLVASPALLQQYGTPAS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLG 238
             ++ +   ++     P     F  L  V       I +PR   L  +  + + +    G
Sbjct: 183 PADVARLPALSMN--WPDGRGHFALLDAVGHDYSVQIEQPR---LITDDLMVLTEAAEAG 237

Query: 239 SGIALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294
            G+A LP    +       LVR++ D I P   ++  +P      G + A R FI FL A
Sbjct: 238 LGVAQLPVQLCHAALAAGRLVRLLPDYIIPGGILHAVFP---SRRGLVPAVRAFIDFLAA 294


>gi|239820457|ref|YP_002947642.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805310|gb|ACS22376.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 308

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 4/192 (2%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V   GSFT AA+ L  S ++++R ++ LE  +  +L  R +R L+LTE 
Sbjct: 2   DRLRAYEVFVTVVARGSFTKAADALDTSPANVTRYVNELEAHLRTRLMNRTSRRLSLTEG 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  ++  T+     +S++P G+LRI   +  G  +L     +F+  YPD+
Sbjct: 62  GEALFDRAKSILEEVAETEALATTASLQPRGRLRINAPLSFGSLVLAPLWPKFMAKYPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +DI  +  D AIR+ +   S + I R+L        A+P YL     P +
Sbjct: 122 ELDIALIDRVVDIVEEGYDLAIRISR-TTSGNHIARRLGRSQNLVCASPGYLAAHGMPET 180

Query: 183 IQELDKHNLITF 194
             +L +H  + +
Sbjct: 181 PADLSRHPCLGY 192


>gi|298486300|ref|ZP_07004363.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159307|gb|EFI00365.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 302

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 131/279 (46%), Gaps = 9/279 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +  SGS + AA+    S +S+ R ++ LE+ +G++L  R  R + LT++G +  R T
Sbjct: 10  FVRIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTDEGEEYLRWT 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +    +  +  L        G LR+   ++ GQ  +   +  FL  + +I ++L L++
Sbjct: 70  RRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLCEHQNINVELNLND 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + + +  +  D A+R+   +  S+++ R++    + + A+P YL+      + + L +H 
Sbjct: 130 QIVPLLDERLDLALRIGH-LPDSAMVARRIGATRLVSCASPGYLRTAPLLDTPKSLPEHA 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            IT      +          +   I  PR+ C QV +       CV G G+  L  Y V 
Sbjct: 189 CITLASHGRQWYFRHQGKELIQDII--PRLVCNQVRAA---SLACVQGLGVTRLMHYQVA 243

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           D   +  L+R++ D  T    +   YP AL+ + ++KAF
Sbjct: 244 DELADGRLIRVLNDFETADLPIQLVYPHALQLSPRVKAF 282


>gi|257486092|ref|ZP_05640133.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331010436|gb|EGH90492.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 294

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 10/286 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 4   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 63

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +  +L  YP   + L++
Sbjct: 64  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSVDLLI 123

Query: 129 DNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            N+ +D+  +  D AIR+  +P    ++I R L        A+P YL     P S QEL 
Sbjct: 124 GNEAVDLVSERIDLAIRITNQP--DPNVIARPLGHCDSVVCASPAYLAMHGTPSSPQELA 181

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN +T+     K + +F        P+  P    L  N  + +++  V G+GI L P +
Sbjct: 182 AHNCLTY-SYFGKSLWEFT---RQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVH 237

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                  +  L+ ++ D    +  ++  Y      +  L+   +F+
Sbjct: 238 SAAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFL 283


>gi|193078755|gb|ABO13827.2| putative transcription activator [Acinetobacter baumannii ATCC
           17978]
          Length = 300

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 145/295 (49%), Gaps = 10/295 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT++G +
Sbjct: 6   EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YPDI+I+
Sbjct: 66  FLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P   +E
Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTPTQPEE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L++H+LI F    P  +  +      +    + +I   + +S  ++ Q  + G GIA L 
Sbjct: 185 LEQHDLIGFTK--PTYINSWPIKVGDEYFFAQSKI---KASSGETVRQLTIRGHGIARLS 239

Query: 246 DY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++ I KD     L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 240 EFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|170702944|ref|ZP_02893782.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170132146|gb|EDT00636.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 300

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 96/187 (51%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++++  +   G+FT AA+ L L + ++++ +  LE E+GI+L  R  R +++T +G   H
Sbjct: 7   MQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGIRLLNRSTRRVSVTAEGEAFH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++       +  V P G+LR+   + L + ++   L EF   YP I++ L 
Sbjct: 67  ARCVQLLGSIDDAFASFPKQRVAPKGRLRLDIAVALAKTVVIPALPEFQQRYPQIELVLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D+  +  DC +R+   ++ SS+I R +  + M   A+P Y+     P ++ +L 
Sbjct: 127 ASDQPADLIGEGIDCVVRVGT-LKDSSMIARTVGAVPMVTCASPAYIVRHGLPRTLDDLR 185

Query: 188 KHNLITF 194
            H  + F
Sbjct: 186 AHRAVNF 192


>gi|241203692|ref|YP_002974788.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857582|gb|ACS55249.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 300

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 135/298 (45%), Gaps = 14/298 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G F+ AA +L++S + +   +  LE  +G++L  R  R ++LTE G   +
Sbjct: 7   LTVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTETGKYYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++  +L+         S  P G L++ T+  + + LL   + EF+ LYP I +   
Sbjct: 67  ERSLQILAELDEADRTAGALSTTPRGTLKVYTSSAIVRFLLP-VVGEFMELYPSISLDFS 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  + +D+  D  D  +R   P   SSL+ RKL         +P Y ++   P +  E+ 
Sbjct: 126 VGERMVDMIEDGYDLVMRTVPP-PDSSLVARKLTPWRHMLVCSPVYFESHPMPKTPAEVA 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVL-GSGIALLP 245
            HN + +    P   E   W         E  +IS   V++   ++++  L G GI L P
Sbjct: 185 DHNCLQYA-YYPYGDE---WRFEDGEGKKESVKISGNVVSNSAEMLRFLTLTGRGIFLAP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
            ++V D+     LV+IM D     F +   YP       K++ F + +   F + R W
Sbjct: 241 SFVVFDDIAEGRLVKIMPDYRPIEFNINAVYPNRSHLPTKVRLFIDLLAERFAEHRKW 298


>gi|309703491|emb|CBJ02831.1| LysR-family transcriptional regulator [Escherichia coli ETEC
           H10407]
          Length = 310

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +   GSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHRGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|117617507|ref|YP_857071.1| transcriptional regulator [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117558914|gb|ABK35862.1| transcriptional regulator [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 325

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 123/278 (44%), Gaps = 18/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V  +GSF+  AEQ  L+ S +S++I  LE E+G++L YR  R LTL+E G  
Sbjct: 29  DDLILFAQVVEAGSFSKVAEQNSLTNSVVSKRIGRLEEELGVQLLYRTTRRLTLSEAGKA 88

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++    V          +     K SG +R++     G+ LL   + +F   +P + ++
Sbjct: 89  LYQGAKNVKAAALDAFDAVAGFGEKVSGHVRMSVPTISGELLLADAVADFCQQHPGLTVE 148

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +++  +  D  IR    +  SSLI R ++       AAP Y++    P    +
Sbjct: 149 MSLDNRFVNLVEEGFDLVIRT-GYLDDSSLIARHILDSQWVICAAPAYVRRFGAPREPSD 207

Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  HN + +              E+ N+L +V           L+        +  + G 
Sbjct: 208 LLTHNCLRYAYQSTGASEWAFKGEEGNYLLSVSGSFCTDNAGALR--------KAALGGR 259

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           GI  +P  +V     N  LV +  D +     +Y  YP
Sbjct: 260 GIVYVPRCLVYHDLMNGELVDLFPDQVGKKLGIYAVYP 297


>gi|33597807|ref|NP_885450.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33574236|emb|CAE38568.1| probable LysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 306

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 131/291 (45%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            DWD LR F  VAR+   + AA +L +  ++++R++  LE E+   LF +  + G  LTE
Sbjct: 2   LDWDSLRYFLEVARTQRVSAAARKLGVEHTTVARRVRALEAELDSLLFEKSRSAGYVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   + T +  L       SG +RI  T   G  +L     +F   YP 
Sbjct: 62  DGQRLFVFAEQMESTVHTARENLSGIGQALSGHVRIGATEGFGSYVLTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    +  KL    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCTKLCDYTLMLYGTPAYLARHAPIR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  HN I + D +    E   +L  V   +   ++  L+  S ++     + G  +
Sbjct: 181 ERADLAGHNFIGYVDEL-LFSERLRYLEDV---LPNSQV-VLRSTSVIAQYHAALQGQSL 235

Query: 242 ALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I   +P L  ++ D   I  SF +Y C+ E L+   ++ A   F+
Sbjct: 236 AILPCFIAAQDPRLTPVLPDDIAIMRSFWMY-CH-EDLRRLKRVSALWEFM 284


>gi|237800755|ref|ZP_04589216.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023613|gb|EGI03670.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 303

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 136/301 (45%), Gaps = 33/301 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++TE G +
Sbjct: 7   DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQSMGVVLLHRSTRQVSITEDGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++   G+  +   L E    YP + I+
Sbjct: 67  VYEWARGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAARYPKLDIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L T      A+P YL+    PLS+ E
Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLATNWRVLCASPAYLQQRGVPLSLGE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI------GEPRISCLQVNSYLSI------MQ 233
           L  H+ +   +               DRP       G      ++V   LS        Q
Sbjct: 186 LANHDCLVIKER--------------DRPFGIWHLNGSQGAETVKVTGSLSTNHGEIARQ 231

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
           +C+ G G+ L   + V+ +    R+++  + P +     ++  +   L ++ K++    F
Sbjct: 232 WCLDGRGVLLRSLWDVRTDLAEGRLIQ--VLPEYRQDADIWAVHTSPLMSSAKVRVTVEF 289

Query: 290 I 290
           +
Sbjct: 290 L 290


>gi|186471572|ref|YP_001862890.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197881|gb|ACC75844.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 297

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 128/268 (47%), Gaps = 8/268 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +AR  SFT AA +L +SQS++S  I  LE  +G++L  R  R ++ TE G +L + 
Sbjct: 11  VFLAIAREKSFTRAAAKLGVSQSALSHTIRDLEARLGLRLLTRTTRSVSTTEAGEELFQA 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +    +++ +   L +   KP+G +RI  T    + ++   L++ L+ YPDI++++ +D
Sbjct: 71  VAPRIEEIDASLAALSDFRDKPAGVIRITATDHPIETVIWPKLRKLLISYPDIKVEVTVD 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
               +I  +  D  +R    +    +  R    I M    +P Y  N   P S ++L  H
Sbjct: 131 YGLSNIVEERYDIGVRFGDQVAKDMIAVRISPDIPMAIVGSPSYFANRNHPKSPEDLLNH 190

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
             IT      K +  + W     +   + R+   +  N+   ++Q  + G G+A +P+  
Sbjct: 191 ECITLRMTTTKAL--YAWELKKGKRETQARVGGQVTFNTQPQMVQAALDGFGLAFVPEDA 248

Query: 249 VKDNPN---LVRIMED--VITPSFTVYF 271
           V +  N   L  +++D   I P +  Y+
Sbjct: 249 VVNYINKGQLQSVLKDWCPIWPGYHAYY 276


>gi|15595254|ref|NP_248746.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107099048|ref|ZP_01362966.1| hypothetical protein PaerPA_01000057 [Pseudomonas aeruginosa PACS2]
 gi|218888801|ref|YP_002437665.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254237699|ref|ZP_04931022.1| hypothetical protein PACG_03787 [Pseudomonas aeruginosa C3719]
 gi|254243166|ref|ZP_04936488.1| hypothetical protein PA2G_03968 [Pseudomonas aeruginosa 2192]
 gi|296386539|ref|ZP_06876038.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313112392|ref|ZP_07798147.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9945879|gb|AAG03446.1|AE004445_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126169630|gb|EAZ55141.1| hypothetical protein PACG_03787 [Pseudomonas aeruginosa C3719]
 gi|126196544|gb|EAZ60607.1| hypothetical protein PA2G_03968 [Pseudomonas aeruginosa 2192]
 gi|218769024|emb|CAW24784.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310884649|gb|EFQ43243.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 306

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 1/186 (0%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  V  SGS T AAE+L +S++ +SR ++ LE  VG +L +R  R L+LT+ G++L  
Sbjct: 8   RVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWVGARLLHRSTRRLSLTDAGAELLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    +  Q   Q     P G LRI +++   Q  L      F+  YP   I L +
Sbjct: 68  QCREMLAVADAMQATGQTRRDSPRGTLRITSSLSFAQAWLTRAAAAFVERYPGTAIDLQV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +++  +  D A+R+   +   +LI R+L        AAP YL+    P   ++L  
Sbjct: 128 NSQVVNLVEERIDLALRIANQLD-PNLIARRLGECRSVICAAPDYLRRHGTPRRPEDLAL 186

Query: 189 HNLITF 194
           HN +T+
Sbjct: 187 HNCLTY 192


>gi|289673146|ref|ZP_06494036.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
 gi|330980789|gb|EGH78892.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 303

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 140/296 (47%), Gaps = 26/296 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW+ LR F + +   S + AA  L +  +++SR+I+ LE  + +KL  R  R   LT
Sbjct: 23  ICFDWEDLRYFVMFSTVSSLSGAARILGVEHATVSRRIASLERSLNVKLVDRRKRLYELT 82

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G ++  +  ++  + +        + V    ++ I+    +    L   L  F  ++P
Sbjct: 83  DEGRRVAAIGRQIEAQTQAVGRLAVAAQVVQGVEVTISAPPSVAVEKLVPQLGAFRAMHP 142

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L+ D++   +S   +D  IR  KP++ S ++ R++ T     Y A  YL+  R P
Sbjct: 143 GIMLRLLGDHQYSSLSSCQSDLCIRFSKPVE-SGIVARRIGTASFSFYCARFYLEQ-RPP 200

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--NWLATV--DRP-IGEPRISCLQVNSYLSIMQYC 235
                  ++  I + +   + M D    WL  +  DRP + E +   LQ+ +  +     
Sbjct: 201 ------QQYEFIAYDN---ELMSDSQNGWLRDIVGDRPFVLEAKTVELQIRAAET----- 246

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
             G GIALLP + V+DN  L R+  ++  P    V+    E L+    ++A  N++
Sbjct: 247 --GVGIALLPSFAVEDNDRLCRV--ELSAPLEVDVWLGVHEDLRAVASIQAAMNYV 298


>gi|258544946|ref|ZP_05705180.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
 gi|258519866|gb|EEV88725.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
          Length = 303

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 120/264 (45%), Gaps = 9/264 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF    + GSF+ AA  L+++    S+Q++ LE  +G+ LF R+ R L LT++G  
Sbjct: 7   DDLAVFLQTVQCGSFSAAARALNVAPKVASKQVARLEAALGVALFTRNTRNLRLTDEGEA 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V   L   + EL + +    G +R+      G+  +   + +F   YP +   
Sbjct: 67  LRDKARSVLDGLAEMR-ELAQGADGMRGMIRLTAPAPFGRKYVAAAVADFSRRYPQVGFS 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  ++     D AIR+ + +  S LI R++        A+P YL     P S  E
Sbjct: 126 LCLSDEVCNLFAGNFDLAIRMGE-LADSRLIARRIAVNRRILVASPAYLAEYGCPQSPAE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H  + F    P    D +W           R+S  L  +S   +  +C+ G GI+L 
Sbjct: 185 LSEHRCLRFA--YPGLAAD-SWTLRNGDAEAVVRVSPHLSSDSGEVLHAWCMAGLGISLR 241

Query: 245 PDYIVK---DNPNLVRIMEDVITP 265
             + V    +N +L R++ D  TP
Sbjct: 242 ETWDVCEALENGSLRRVLPDWQTP 265


>gi|238763992|ref|ZP_04624948.1| Glycine cleavage system transcriptional activator [Yersinia
           kristensenii ATCC 33638]
 gi|238697809|gb|EEP90570.1| Glycine cleavage system transcriptional activator [Yersinia
           kristensenii ATCC 33638]
          Length = 305

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 131/295 (44%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAADELLVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    + L   +L    +    AP  L          +
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLLMGDNGLKVPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
           L  H L+             +W+A   R +G P+I+  Q    +  + ++Q  V G GIA
Sbjct: 186 LANHTLL-------HDTSRRDWMAYT-RQLGVPQINVQQGPIFSHSVMVVQAAVHGQGIA 237

Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+ + + +      R++    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 238 LVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|184159955|ref|YP_001848294.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213158760|ref|YP_002321182.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|260557799|ref|ZP_05830012.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|301345893|ref|ZP_07226634.1| transcriptional regulator, LysR family protein [Acinetobacter
           baumannii AB056]
 gi|301594538|ref|ZP_07239546.1| transcriptional regulator, LysR family protein [Acinetobacter
           baumannii AB059]
 gi|183211549|gb|ACC58947.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213057920|gb|ACJ42822.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|260408590|gb|EEX01895.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 300

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 20/300 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT++G +
Sbjct: 6   EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YPDI+I+
Sbjct: 66  FLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P   +E
Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTPTQPEE 184

Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L++H+LI F      +  P  + D  + A           S ++ +S  ++ Q  + G G
Sbjct: 185 LEQHDLIGFTRPTYINSWPIKVGDEYFFAQ----------SKIKASSGETVRQLTIRGHG 234

Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ I KD     L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|212712113|ref|ZP_03320241.1| hypothetical protein PROVALCAL_03193 [Providencia alcalifaciens DSM
           30120]
 gi|212685254|gb|EEB44782.1| hypothetical protein PROVALCAL_03193 [Providencia alcalifaciens DSM
           30120]
          Length = 313

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 133/296 (44%), Gaps = 18/296 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++ +       L   L  F   +P I ++
Sbjct: 69  YYLDIKEIFSSLNEATRKLQARSAK--GALTVSLSPSFAIQWLVPRLSGFNQAFPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    + L   +L   ++    +P  L    +  + ++
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTDRLYAEYLMPVCSPSLLTGGNQLKNPED 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L KH L+             +W A V + +    I  +Q     S    ++Q  V G G+
Sbjct: 186 LAKHTLL-------HDSSRRDWQAYV-KQLDLQNIVNVQQGPIFSHSSMVIQAAVHGQGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + K   D   LV    +V+      Y    E+  + GK+ AFR +I  +A
Sbjct: 238 ALTNNVMAKNEIDAGRLVCPFSEVLVSKNAFYLVCQESQADLGKIAAFRQWILAQA 293


>gi|167622558|ref|YP_001672852.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352580|gb|ABZ75193.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 304

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F V+A  GSFT AAE+L  S+S +S+Q++ LE  +G+ L  R  R   LTEQG   +
Sbjct: 10  VRAFTVIAEKGSFTIAAEKLGCSRSHLSKQLTQLERYLGVTLITRTTRAQRLTEQGRFFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                    +E    +  + +    GK+ I      +G+ ++   + +F+ L+P+IQ+ L
Sbjct: 70  ERCQHALDIMEQAVAKTVDDAHNLQGKININCVGGYIGEEIVNQLVNDFMTLHPNIQVHL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+ +D  D   R+ + ++ S L+ RKL+ I     A+P Y+     P   +EL
Sbjct: 130 DFSSQRVDLVLDEFDLVFRMGE-LEDSGLVARKLMDIANCTLASPRYIAKHGRPEHPKEL 188

Query: 187 DKHNLIT 193
             H  +T
Sbjct: 189 KHHACVT 195


>gi|116253177|ref|YP_769015.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257825|emb|CAK08923.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 308

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 124/282 (43%), Gaps = 9/282 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V + GS + AA +L L+Q +I R +  LE  +G +LF R   GL  T+   
Sbjct: 7   WDFYRSFLTVLQQGSLSAAARELGLTQPTIGRHVDALELAIGAELFTRSPNGLLPTDAAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                + +G +R++ +  +   +L   L      YP++QI
Sbjct: 67  ALKPYAETLAATTAALLRTASGQRERMAGTVRVSASEVIAVEVLPAILGPLQETYPELQI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +   D+    AD A+R+ +P Q ++L+ R++  I +  +A   YL+    P ++ 
Sbjct: 127 ELSASDMIEDLVNREADIAVRMAEP-QQAALVVRRIGDIPLGFHAHRRYLERHGLPQTLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243
           +L  H LI F            ++    +    P I+   + +S L+ +     G GI L
Sbjct: 186 DLTNHRLIGFD-------RQTAYVRMAMKRYAVPGINFSYRTDSNLAQLSAIRAGVGIGL 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
               + + NP+LV ++ D        +    E LK++ + +A
Sbjct: 239 CQIGLARGNPDLVHVLPDAFAIPLGTWVAMHENLKSSPRYRA 280


>gi|116252416|ref|YP_768254.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257064|emb|CAK08158.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 295

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 125/257 (48%), Gaps = 3/257 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+     A SGSF  AA++L +S + + R+I  LE E G+KL  R  R   LTE G
Sbjct: 3   DLLNLQTLIAAATSGSFAGAAKRLGISPAMVGRRIQALEQEYGVKLIERTTRTQRLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+     + +  +LE      +  +   SG+LR++    LG   L   + E    +P + 
Sbjct: 63  SRFLVKANRIIDELEELNDISRPDAEAMSGRLRLSAPTTLGIKRLAPVMAELAERHPALS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++++D+  +  D AIR+ + ++ SSLI R++ + H    A+P YL     P   
Sbjct: 123 VELNLSDRNVDLVAEGYDLAIRIGE-LKPSSLIARRVGSYHFVCCASPAYLDRFAVPERP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L     I   +L+P+    F         +G      +++++  ++    + G+G+  
Sbjct: 182 EDLRLGRCILNLNLVPRDEWPFETEGRESFTVGVR--GNIEIDNGEALRMAALAGAGVIY 239

Query: 244 LPDYIVKDNPNLVRIME 260
           +P  +V D+    R++E
Sbjct: 240 VPVDLVADDIADGRLVE 256


>gi|238783726|ref|ZP_04627746.1| Glycine cleavage system transcriptional activator [Yersinia
           bercovieri ATCC 43970]
 gi|238715439|gb|EEQ07431.1| Glycine cleavage system transcriptional activator [Yersinia
           bercovieri ATCC 43970]
          Length = 298

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 132/299 (44%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 2   NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 62  YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 119

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    + L   +L    +    AP  L           
Sbjct: 120 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPGLL----------- 167

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238
           + +H L    DL    +       +W+A   R +G P+I+  Q    +    ++Q  V G
Sbjct: 168 MGEHGLKVPADLAYHTLLHDTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHG 226

Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIAL+ + + +      R++    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 227 QGIALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 285


>gi|220924990|ref|YP_002500292.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219949597|gb|ACL59989.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 305

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 133/289 (46%), Gaps = 18/289 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GSF+ A   L LSQ+ +++ ++ LE  +G +L +R  R LTLTE G    
Sbjct: 8   MQVFVRVAALGSFSAAGRALRLSQTGVTKHVAALEERLGTRLLHRSTRRLTLTEAGRGYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +      +V+P G LR+   +  G   +   L +F   +P ++I L 
Sbjct: 68  DACERILAEIDEAEAAAGAEAVEPRGTLRLNVPLSFGVREIAPALADFAAAHPGLRIDLG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D A+R+ + ++ SSL+ R L    +   AAP YL+    P    +L 
Sbjct: 128 LNDRTVDLIEEGWDLAVRIGR-LRDSSLVARFLAPCRLLVCAAPAYLEAHGTPRRPDDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALL 244
            HN + +            W        GE   P    L+ ++  +++   + G G+   
Sbjct: 187 AHNCLGY-----TLASAEGWR------FGERAYPVSGNLRASNGDALLAAAIAGQGLIYQ 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +IV +   +  LV +       +  ++   P   +   K++A  +F+
Sbjct: 236 PTFIVSEALRDGRLVSLDLGAAPATLPIHALMPPGRRQPAKVRACVDFL 284


>gi|115360737|ref|YP_777874.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286065|gb|ABI91540.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 313

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP + ++L 
Sbjct: 67  DRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P S+++L
Sbjct: 127 LSQHVPDIIDEGYDVSLQLSSAELPDSGLVSQRLGDVHSVLCASPAYLKERGTPRSVRDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H+ +    + P    D  W   +D P G    E  +   QVN   ++      G GI 
Sbjct: 187 EAHSCLQI--VTPIFPRD-RW--HLDGPDGRETFELPLPDFQVNIADALGAALRAGLGIG 241

Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ +      TVY  Y        K++ F +F+
Sbjct: 242 SLPMSSAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292


>gi|73537322|ref|YP_297689.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72120659|gb|AAZ62845.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 307

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 117/245 (47%), Gaps = 15/245 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A +GSF+ AA +L L+ +++S+ ++ LE  +G++LF+R  R LTLT  G +  
Sbjct: 7   LESFVHSAETGSFSAAARRLGLTPAAVSKNVARLERHLGLRLFHRSTRRLTLTSGGEQFF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S  +  L        E + KP+G L++   +  G+  L   L EFL LYP I     
Sbjct: 67  SQVSNPFSALRDAFAGAAEDAGKPAGVLKVGMALAFGREYLVPLLGEFLALYPGIVPDWH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +N+  D+  D  D AI     + +  ++ R+L   H+ A A+P +++        + L 
Sbjct: 127 FENRPTDLIRDGFDAAIGGGIEL-TEGVVARELARTHVVAVASPAFMQG-------KALP 178

Query: 188 KH--NLITFGDLIPKCMEDFNWLA-TVDRPIGE----PRISCLQVNSYLSIMQYCVLGSG 240
           +H  +L+ F  ++ +        A T+   +GE       + L  +   ++    + G G
Sbjct: 179 RHPSDLLAFDGIVRRSGATGRLRAWTLRNQVGEQAPAEHRARLIFDDPEAMAHAAMHGLG 238

Query: 241 IALLP 245
           IALLP
Sbjct: 239 IALLP 243


>gi|319945336|ref|ZP_08019598.1| LysR family transcriptional regulator [Lautropia mirabilis ATCC
           51599]
 gi|319741906|gb|EFV94331.1| LysR family transcriptional regulator [Lautropia mirabilis ATCC
           51599]
          Length = 312

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 13/273 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF  A   L +S++++SR ++ LE  +  +L  R  R L+LT +G +  
Sbjct: 7   MSTFVAVVEAGSFVKAMSVLGISKAAVSRHVAELEQHLETRLLQRTTRRLSLTAEGQRYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV   ++  + E++  S +  G+LRI      G   L      FL   P +Q+ ++
Sbjct: 67  ERCKEVLAAVQEAESEIRSRSGEAYGRLRICVPYSFGILHLAPLWSTFLSENPQVQLDIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A+R+   +  S+LI R+L T  +   A P YL+    P  +++L 
Sbjct: 127 LSDRMVDLVEEGYDMAVRI-GVLTDSALISRRLATTRLILCATPTYLERHGTPKVLKDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H  I +            W  + + P G   +     L  N+  + ++  +   GIAL 
Sbjct: 186 HHQAIVYS----YSARAGEW--SFEGPDGRETVQSETRLFANNGDTCLRVALDHQGIALQ 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           P++++ ++     LV+++    T    +Y  YP
Sbjct: 240 PEFMIHEHLRRGELVQLLPQYNTGERNIYALYP 272


>gi|332160549|ref|YP_004297126.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318606979|emb|CBY28477.1| lysr-family transcriptional regulator clustered with PA0057
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664779|gb|ADZ41423.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863539|emb|CBX73655.1| hypothetical protein YEW_CV11670 [Yersinia enterocolitica W22703]
          Length = 298

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 18/289 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT  G      
Sbjct: 9   VFVTIVERGSMIAAAETLEMSRAMVTRYLAEMEQWAGARLLHRTTRKLSLTHAGEA---T 65

Query: 70  TSEVYHKLETTQ----IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   H LE  +    IE QE+  +  G LRI+ +  LGQ+ +   + ++L  YP + + 
Sbjct: 66  LARCRHMLEFAKDMDLIEGQENE-ELRGLLRISCSQSLGQSAVAIAVTDYLRRYPQVAVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L ++N+ +++  +  D A+R+   +   +LI R L   H    AAP YL     P +  +
Sbjct: 125 LQMNNRSVNLVEERIDLALRITNDLD-PNLIARPLSICHSVVCAAPSYLSAKGTPKTPPD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN +T+     K +  F+         +G      L  N  + ++   + G+GI L 
Sbjct: 184 LAVHNCLTY-SYFGKSLWHFDQQGVKSSVAVG----GNLSANESVVLLSGALEGAGITLQ 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y       +  L+R++ D    +  +Y  Y    +    L++  +F+
Sbjct: 239 PSYSAAPYIASGELIRLLPDYHPQAMGIYGIYTSRRQMPATLRSMLDFL 287


>gi|269966149|ref|ZP_06180239.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829296|gb|EEZ83540.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 291

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 140/296 (47%), Gaps = 29/296 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +KL +F  VA++ +F+ AAEQL +S+S +S QI  LE+E+   L  R  R + LT +G  
Sbjct: 8   EKLMLFAEVAQTLNFSRAAEQLSISKSYLSEQIKRLESELATPLIVRTTRSVRLTAEGES 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++  ++   +  L + S +  G +R+       + +L      F  L+P+++ +
Sbjct: 68  IFAQAEDLKRRVMEMEKSLSQQSEQIDGLIRLTAPKMFAEAVLHDLCVAFRALHPNVEFE 127

Query: 126 LILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +  +++    D A R  R P +  ++I   L+  H    A+P YL+    P ++ 
Sbjct: 128 ILSSYQAFNLTETSVDFAFRATRTPPE--NMIAHHLLDYHHWLVASPQYLQEEGTPETLD 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238
           +L +H  +T        +    W      P+   +   +Q   +LS      + +  + G
Sbjct: 186 DLQEHQCLT-------TLHQKEW------PL---KTGTVQTQGWLSSNENRLLKESALSG 229

Query: 239 SGIALLPDYIVK---DNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA L  Y V+   ++  LV+++ E+       VY  YP+ +  + K +AF  F+
Sbjct: 230 NGIARLASYFVEQDVEHGRLVQVLSEETDHQHNAVYLVYPQLIYQSAKTRAFIEFV 285


>gi|120609112|ref|YP_968790.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120587576|gb|ABM31016.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 325

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 123/287 (42%), Gaps = 21/287 (7%)

Query: 6   DKLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+ F     VA  GS T AA    ++ + + R++  LE  +G+KL  R  R ++LT +
Sbjct: 2   DKLKAFESFVSVATRGSLTAAARAEGVAPAIMGRRLDALEEHLGVKLMVRTTRRISLTHE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS        +   +   +  +     + +G LRI      G+  +   +  F  L+PD+
Sbjct: 62  GSAFLEDCQRLLADVAEAEASVSVGGARATGHLRITAPAGFGRRHVAPLVPLFRDLHPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P  
Sbjct: 122 RISLNLSDRVVDLAGEGFDCAVRVGD-LPDSSLVSVRIADNRRLCVATPAYLERHGTPKH 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPR-------ISCLQVNSYLSIM 232
             EL +H  +    L     +   W   +   D P G P           L  +    + 
Sbjct: 181 PSELARHACLM---LSSDASQTRGWAFRMPAAD-PGGAPGDVVHVKPTGPLDCSDGQVLH 236

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
            +C+ G GIA    + V+       LV ++ED   P   +Y  +P A
Sbjct: 237 DWCLGGWGIAWRSTWEVEAEIAAGRLVAVLEDFAAPPNGIYVVFPHA 283


>gi|320158100|ref|YP_004190478.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
 gi|319933412|gb|ADV88275.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
          Length = 303

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA++L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LASFILVVNEGSFTAAAKKLDVTPSALSKLITRLEQALQVKLFERTTRKLLITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 73  DQSIAMVNAAQQA-IEISASDHSEPAGALTVAAPEAFLNSVLQPFVVPFLQQYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + +ID+  D  D A +L  KP    +L+ ++L   H+   A+P YL     P    E
Sbjct: 132 RAADGEIDLFRDNIDVAFKLTDKP--DENLVLKELSKTHLVLCASPDYLAQRGMPSHPTE 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +      +D  W    D       +S    VN     +     G GI + 
Sbjct: 190 LTEHDCLYLAE----NDKDNLWSFFKDEAFYSVAVSGRYAVNHSQMRLNGVKQGLGIGIF 245

Query: 245 PDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
            D++++D      +V++++D +  S     +   YP+      +L+ F +FI
Sbjct: 246 HDFVIRDALERGEVVKVLDDWMIKSNYHGAIAMQYPQTKYMPARLRVFIDFI 297


>gi|313499387|gb|ADR60753.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 299

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 122/258 (47%), Gaps = 10/258 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  VA++GS + AA  L L+ S++SR ++  E  +G +L  R  R LTLT +G   
Sbjct: 9   EMEIFAKVAQAGSLSAAARALGLTPSAVSRILARTEQRLGTRLLLRTTRALTLTPEGEAY 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    V   +   +  + +  V P G+LR++  +   +  +   L  F   YP + + L
Sbjct: 69  LRGARRVLADMLEVEEAITDQGV-PRGRLRVSAALGHARLTVVPLLAAFSARYPQVLVDL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  DI    AD A+R    +  SSL  R +        A+P YL+    PL  ++L
Sbjct: 128 TLSDEVADILGGQADVALRFGH-LPDSSLSARAIGETGQVVVASPEYLQRHGTPLEPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + F     + M D  W    D      ++   ++ +S  ++ Q   LG+G+A + 
Sbjct: 187 ARHNCLRFN--FRRAMPD--WPFHRDGHTFSLKVKGNIECSSGEALAQLARLGAGVARIG 242

Query: 246 DYIVKD---NPNLVRIME 260
            + V D   N  LV ++E
Sbjct: 243 TFTVADDLANGQLVPLLE 260


>gi|83859533|ref|ZP_00953053.1| transcriptional regulator, LysR family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851892|gb|EAP89746.1| transcriptional regulator, LysR family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 296

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F  VA   SFT AAE+L ++  + S+QIS LE  +  +L  R  R + LT+ G  
Sbjct: 5   DALRLFAAVAELESFTRAAERLGMTAGAASKQISALEERMQARLLERTTRSVRLTDAGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L         + +  +  L       +G LR++  +D G + L   +  F+  +P ++++
Sbjct: 65  LLERVGPWLSEYDAIENGLVAEQAAAAGILRVSAPVDFGSSRLIQPITAFMAQWPAVEVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  D  +R+ + +  SSLI R+L    +   A+P YL     P    +
Sbjct: 125 LEFSDRMVDLVDEGFDLGVRIGQ-LTDSSLIARRLAPAPLKVLASPAYLNAAGAPEHPYD 183

Query: 186 LDKHNLI 192
           L +H+ I
Sbjct: 184 LARHDCI 190


>gi|330901197|gb|EGH32616.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 304

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 123/276 (44%), Gaps = 25/276 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR  SF  A  ++ +S S++S  + GLET +GI+L  R  R +TLT  G +L  + 
Sbjct: 14  FLAIARHQSFRKAGLEVGISASALSHAMKGLETRLGIRLLNRTTRSVTLTAAGEELQGLI 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S   + +      L     +P+G++R+    D  + LL   L  F+  YPDI++ L + N
Sbjct: 74  SSPVNDIGQALETLNRLRDEPAGRIRLNVLSDGAKLLLGPVLPVFVDRYPDIEVDLTVTN 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +DI  D  D  IR    + +  + QR    +      AP YLK    P    +L +H 
Sbjct: 134 RMVDIIGDGHDAGIRFGGTVPADMIAQRLSPDVAWAVVGAPDYLKRFGIPKHPSDLYQHR 193

Query: 191 L--ITFGDLIPKCMEDFNWLAT-------VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              I  G+        ++W  +       +D P        + ++     +   + G G+
Sbjct: 194 CLRIRLGN-----ARIYHWQFSKEGQQLEIDAP------GAVTIDETRVGVAMAMRGVGL 242

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI--TPSFTVYFC 272
             +P ++V+      +L R++ED     P F +Y+ 
Sbjct: 243 MYVPAWVVERQIAEGSLHRVLEDWTHHDPGFHIYYS 278


>gi|296115316|ref|ZP_06833955.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978139|gb|EFG84878.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 308

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D++ + VF     +G F  AAE+L LS+S++++ I  +E  +G++LF R  R   LT
Sbjct: 1   MRDDFEGISVFLKAVEAGGFARAAERLSLSRSAVAKTIGRIEKRLGVRLFQRTTRRHNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   +        ++   Q  L+       GKL +     LG+  ++  L +  + Y 
Sbjct: 61  EEGHIYYERCVRAREEVRVGQSVLEFGRFNVKGKLTVIMPTVLGRYCVEPFLLDLAIKYE 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           ++++ L   + + ++  +  D AIR    R+P  +S L  RK+        AAP YL  C
Sbjct: 121 NLELDLRFSDLEHNLVTERFDLAIRNGLDREP--TSFLNVRKIAAQRQVLCAAPSYLLRC 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               S++++  H+ + +      C+  F  +   +  +  P    LQ ++  ++    + 
Sbjct: 179 GPVHSLEDIWHHDALIYWKNEQPCLWKFRDIGGTEFKL--PPKWRLQFDNQEAMADAALR 236

Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPE 275
           G GIA LP +++ ++ N   LV +++++   S  +Y  +P+
Sbjct: 237 GMGIACLPRWLIHNHLNEGRLVSLLDELPLASQDIYAVWPQ 277


>gi|268590611|ref|ZP_06124832.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291314003|gb|EFE54456.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 299

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 141/295 (47%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  K+  F  V  SGSFT AA+ L LS+S +S  I  LE ++ + L  R+ R + LT
Sbjct: 1   MQRNLKKIISFLQVVDSGSFTKAADILGLSRSMVSVDIKQLEAQLNVSLLTRNTRNIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     + ++++    + Q      +G LR ++T + GQ  +   L EF  LYP
Sbjct: 61  EVGKHFYDDFKRIQNQIDEAFEKSQNLGTNIAGLLRFSSTSEFGQRFILPLLPEFCRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q   ++   D+  +  D +IRL   +++SSL  +KL    ++  + P +LK  + P
Sbjct: 121 KLRLQYSFNSSLDDLITEKLDLSIRLGN-LKNSSLKMKKLGEYEIYLVSTPEFLK--KYP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  Q  D  N+      +    +   +L  + +     P I     ++  +++ + VL S
Sbjct: 178 IK-QLTDLANVPWINHALLNWQDPQYFLQNSKNEKYYLPLIKNQYESNSAAVIHHMVLAS 236

Query: 240 -GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA+ P ++V D+     LV ++ +   P   +   YP       K +AF +F+
Sbjct: 237 LGIAICPAWMVDDDLQHERLVHVLPEYRLPKQNIQLLYPNTFVLPAKTRAFIDFL 291


>gi|221369388|ref|YP_002520484.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
 gi|221162440|gb|ACM03411.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
          Length = 315

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 14/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++AR  SF+  A+ L LS S++SR+++ LE  +G++L  R  R ++LT +G   +
Sbjct: 6   LSFFVMLARRESFSATAQDLGLSASAVSRRLARLEDRLGVRLLNRTTRKVSLTSEGEAYY 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +  L +   +P+G LRI  T+  G+  L   +  F  ++P +++QL+
Sbjct: 66  GAALRLLDEIADLEHNLSQGRDRPAGLLRINATLGFGRTHLAPAIARFRRIHPAVEVQLL 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +++  +  D  IR   P     ++ R L        AAP YL+    P S+ +L 
Sbjct: 126 LTDAPLNLVEEGIDLGIRFGAP-PFGRMVMRLLQRNRRFLCAAPSYLEARGVPQSLTDLQ 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242
           +H+ I    ++ +  + ++     D  IGE   S      L  N     + + + G GI 
Sbjct: 185 QHSCI----VLRQDHDAYDVWRFDD--IGEASPSAKVSGELSTNDGEIALAWVLDGQGIM 238

Query: 243 LLPDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L  ++ +  +     +R++      +  ++  YPE    + K++ F + +    RD
Sbjct: 239 LRSEWDIAQHVREGRLRLLLPHYRQTANIHAIYPERHNLSAKVRVFADHLAAHVRD 294


>gi|77457171|ref|YP_346676.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381174|gb|ABA72687.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 293

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+   F  V  +GS T AA+ L  +++ +S  +  LE E+G+ L  R+ R L LT+ G +
Sbjct: 5   DRFDTFKAVVEAGSLTAAADTLGQTRAVVSFNLKRLEEELGVTLLTRNTRQLALTDAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            +R        L+  ++ ++E+  + S   G LRI TT++     +   L+ F    P +
Sbjct: 65  FYR---RCLRTLDEARLAVEEARSEHSQLKGTLRITTTVEFALAQVVPALEVFRQQQPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L   +   D+  +  D AIRL + +  S+L   +L T  + A AAP  ++      +
Sbjct: 122 NIHLSTSSTHADLISERFDLAIRLGRML-DSNLRAVQLSTFEVFAVAAPGLIERFAPVDT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L+    +  G +    + D      + +P  +P  + +  ++  ++  + + G G+A
Sbjct: 181 LAVLESMPTLGHGRVPEMTVSDPAGTEHIYQP--KPGTTAIVADNSATLRAFALTGQGVA 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP ++++   D   L R++ D       VY  YP+      K++AF +F+
Sbjct: 239 ILPQWLIQEDLDAGRLQRLLPDYRFAQQGVYALYPDTRHLPLKVRAFIDFM 289


>gi|315499060|ref|YP_004087864.1| transcriptional regulator, lysr family [Asticcacaulis excentricus
           CB 48]
 gi|315417072|gb|ADU13713.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 298

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 18/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR GS T AA +L+L+QS++SRQI+ LE ++ ++LF+R  + + LT  G    
Sbjct: 14  LAAFEATARLGSVTAAARELNLTQSAVSRQIAALEAQLEVELFHRERQTVRLTAGGEAYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E    + +  + L+ +     G L++A     G   L   L +FL     IQ+ LI
Sbjct: 74  REVREALKIISSASLSLRANPH--GGTLKLAILPTFGTRWLAPRLPDFLRNNSGIQVNLI 131

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
                 D   +  D AI   +   P   S+L++ ++V           Y     EP  ++
Sbjct: 132 TRIGVFDFRSEGLDAAIHFGRPGWPGAESALLRPEVVIPACAPELKAQY--GFAEPADLR 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +    +L +     P   E  NWL     P     +  +  + + ++ Q    G G+ALL
Sbjct: 190 QAPLLHLTS----RPDAWE--NWLEAHSAPSDH--VHGMLFDQFATLAQVARSGLGVALL 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P ++ ++   + +LV  +E  ++     +  +P    N   LKAFR+++ 
Sbjct: 242 PQFLAEEEFASGSLVPALEAPLSTGEAYHLVWPAERSNHPPLKAFRDWLL 291


>gi|158424634|ref|YP_001525926.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158331523|dbj|BAF89008.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 330

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 96/192 (50%), Gaps = 1/192 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++ DW+  R F  V R+GS + AA +L L+Q ++ R+I  LE  +G  LF R   GL  T
Sbjct: 28  LASDWENQRAFLAVLRTGSLSAAARELGLAQPTVRRRIEALEQALGTPLFTRSPAGLLPT 87

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       Q        + SG +RI  +  +G  +L G ++  +  +P
Sbjct: 88  EAARTLGPHAEAMAAAAAAFQRAASGPRAEISGTVRITASDMIGTQVLPGLIEPLMARHP 147

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +++ L N+  D+    AD A+R+ +P Q S+L+ R +  + +  +A P +++    P
Sbjct: 148 RLTLEVHLSNRTQDLLRQEADIAVRMVRPTQ-SALVIRAIGIVRLGLFATPAFVERHGMP 206

Query: 181 LSIQELDKHNLI 192
             + +L ++ LI
Sbjct: 207 ERLSDLSRYPLI 218


>gi|119478548|ref|ZP_01618491.1| transcriptional regulator, LysR family protein [marine gamma
           proteobacterium HTCC2143]
 gi|119448452|gb|EAW29701.1| transcriptional regulator, LysR family protein [marine gamma
           proteobacterium HTCC2143]
          Length = 310

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 138/296 (46%), Gaps = 17/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  + S+T A++   + +S++SR+I+ LE  + ++L  R++R L+LT++
Sbjct: 2   LDINAMLLFARVVAAQSYTQASKDTGIPKSTLSRKIAQLEEHLDVRLLQRNSRSLSLTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  ++     +  ++E  ++ ++ +    +G L++   +   Q++       FL  YP I
Sbjct: 62  GRLVYEKALNILSEVEAVELSVESARQDVAGTLKVLFPVSFDQSIATSLCTGFLKKYPKI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +      + DID+     D A+    P+ SS+LI + L    M   A+P YL+    P S
Sbjct: 122 ETIFQFSDSDIDLISQNFDIAVAF-GPLSSSNLIAKPLFQRDMVLVASPAYLEKQGTPTS 180

Query: 183 IQELDKHNLITFGD-----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           I  L  H  I  G+     + P        L T      +P+ +C  VNS  ++ Q  + 
Sbjct: 181 IAALADHQGILLGNSSSMPIWPLGTGTQKSLVTF-----QPK-AC--VNSAAAVKQLVMA 232

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIALL     K       LV+I+++        Y  Y    + + ++  F +++
Sbjct: 233 GLGIALLSASQCKLGLQQGTLVQILKEFPLEPLKAYGLYSSRHQLSPRISCFLDYV 288


>gi|77458830|ref|YP_348336.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382833|gb|ABA74346.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 302

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 132/293 (45%), Gaps = 14/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A   L + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLGARLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R    +  + E     +   S +P G+LR+++   L   +L   +  FL  YP +Q
Sbjct: 63  ERYLRHCQAMLLEAEMADETVASMSSEPRGRLRVSSPTGLAHEMLPVVISNFLGKYPQVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ L N+ +D+  +  D A+R+R+   +   L+ R+L    M   A+P +++     L 
Sbjct: 123 LEVTLINRRVDLITEGIDVALRVREHGDEEPMLVTRRLRQAQMVVVASPSFVQG----LE 178

Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240
           I    D  NL   G L    M     L    +       + L ++ ++ + + CVL G G
Sbjct: 179 INHPQDLKNLPVLGALEADRMVHVRLLDQHGKSCDLALEARLGIDDFI-VRKACVLAGQG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LLP    +   +N  LV+++ D   P   +   YP      G + A R +I
Sbjct: 238 FTLLPMMYCETELNNGTLVQLLPDWSLPGGWLQAVYPH---RRGVMPAVRAWI 287


>gi|218675396|ref|ZP_03525065.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 304

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 20/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  +F+ AAE+L L+Q +ISRQI+ LE ++G+ LF R +RG+ LTE G+   
Sbjct: 15  LAAFDSVARLSTFSAAAEELSLTQGAISRQIAALEEQLGVLLFERSSRGVILTEAGTDYA 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +    ++ +    LQ  + + + +L +A     G   L   +  F+  +P+I +   
Sbjct: 75  RAIAGALAEIRSA--SLQAMTKQHNDQLNLAILPTFGTRWLMPRIPRFVARHPEITLNFA 132

Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                 D   D  D AI + +P     +S+ L++  +  +     A+P +L++    L  
Sbjct: 133 TRIGVFDFDRDDIDMAIHIGQPDWPGAESTFLMEEMVAPV-----ASPSFLRS-HPILKA 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +  L+      P     F     V+   G P    ++   + ++ Q C+ G G+AL
Sbjct: 187 EDLLRLPLLQMASR-PGAWSHFFESLQVN---GTPS-QAMRFEQFSNVAQACIAGLGLAL 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +P +++     N  LV+     +      Y   P + K+   + AFR ++ 
Sbjct: 242 MPLFLIDSELANGQLVQAFPHQVKSPSAYYAVAPLSRKDFRPVAAFRAWLL 292


>gi|254695312|ref|ZP_05157140.1| LysR family transcriptional regulator [Brucella abortus bv. 3 str.
           Tulya]
 gi|261215682|ref|ZP_05929963.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|260917289|gb|EEX84150.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
          Length = 306

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G  L  R  R + LTE G   H
Sbjct: 8   MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTSLLQRTTRQIALTEAGQGYH 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 68  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P +I++L 
Sbjct: 128 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP G      LQ NS   + +  + G GIA    +
Sbjct: 187 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLSGLGIAQRSTW 240

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 241 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|77465387|ref|YP_354890.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126463790|ref|YP_001044903.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|77389805|gb|ABA80989.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
 gi|126105601|gb|ABN78131.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 315

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 14/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++AR  SF+  A+ L LS S++SR+++ LE  +G++L  R  R ++LT +G   +
Sbjct: 6   LSFFVMLARRESFSATAQDLGLSASAVSRRLARLEDRLGVRLLNRTTRKVSLTSEGEAYY 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +  L +   +P+G LRI  T+  G+  L   +  F  ++P +++QL+
Sbjct: 66  GAALRLLDEIADLEHNLSQGRDRPAGLLRINATLGFGRTHLAPAIARFRRIHPAVEVQLL 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +++  +  D  IR   P     ++ R L        AAP YL+    P S+ +L 
Sbjct: 126 LTDAPLNLVEEGIDLGIRFGAP-PFGRMVMRLLQRNRRFLCAAPSYLEARGVPQSLTDLQ 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA 242
           +H+ I    ++ +  + ++     D  IGE   S      L  N     + + + G GI 
Sbjct: 185 QHSCI----VLRQDHDAYDVWRFDD--IGEASPSAKVSGELSTNDGEIALAWVLDGQGIM 238

Query: 243 LLPDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L  ++ +  +     +R++      +  ++  YPE    + K++ F + +    RD
Sbjct: 239 LRSEWDIAQHVREGRLRLLLPHYRQTANIHAIYPERHNLSAKVRVFADHLAAHVRD 294


>gi|315123246|ref|YP_004065252.1| LysR family transcriptional regulator [Pseudoalteromonas sp.
           SM9913]
 gi|315017006|gb|ADT70343.1| LysR family transcriptional regulator [Pseudoalteromonas sp.
           SM9913]
          Length = 294

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 132/270 (48%), Gaps = 10/270 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F    ++GS + AA  L ++ S+IS+QI  +E +VG+ LF R  R LTLTE G   +
Sbjct: 9   LNIFVRTVQTGSMSKAAADLLMTTSAISQQIKQIELDVGLSLFNRSPRELTLTEAGELYY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++      T  +LQ     PSG+L++A  +  G  LL   +K  +  + DI + L 
Sbjct: 69  QSCLQMLAVATATSEQLQHLQNCPSGQLKLAAPVGFGGGLLSEPVKHLISQFSDIDVHLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+     D  + +  P++ S+LI R+L +  +      ++    +  +++ +L 
Sbjct: 129 LSDEPIDMIRTGIDLVLAI-GPLEDSNLIARQLASWPLILCVHKNHALAQQPKITLDDLK 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN I    + P         +T    + + RI+   +N+  +++Q+ +   G A+LP+ 
Sbjct: 188 AHNRIAHIAVDPALTHLTRGESTT---LPKARIA---INNMQTVIQFVLDELGYAILPEP 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            V++      L+ I  D   P + V+   P
Sbjct: 242 EVRNFLATGELLEICTDWQLPHYDVFALTP 271


>gi|167564820|ref|ZP_02357736.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 304

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 132/294 (44%), Gaps = 14/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +GIKLF R  RGL LT  G  
Sbjct: 13  NALRTFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGIKLFERLPRGLALTADGLA 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S+V   L     +  +  VK    + I+TT       L   L  F   +PDI I+
Sbjct: 73  YF---SDVQRALNLIG-DATDRLVKRRSSVTISTTPSFASRWLIPRLASFGDEHPDIDIR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D++      D  D AIR  KP     L+ R L  + ++A  +P  L +     S ++
Sbjct: 129 VIADSQFATFRNDGVDLAIRYGKPPFGKGLVTRFLFPVDIYAVCSPSLLTSPGALASPRD 188

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    DL P+ +        +D P   PR +     S L+I    + G G+AL+
Sbjct: 189 LAGHVLLHDAHDLWPEFLAAMPERVAID-PHRGPRFN----QSSLAI-DAAIAGHGVALV 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V    +   L R+ +  +  S   +  YP   +    +     ++   AR
Sbjct: 243 SDQLVGRDIEAGRLCRLFDFALPLSVGYHIVYPNEPRRPNDIATMEAWLIRHAR 296


>gi|152994181|ref|YP_001339016.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835105|gb|ABR69081.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 301

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 98/188 (52%), Gaps = 2/188 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA++GS + AA +L L+ S++SR ++ +E  +G++L  R  R L LT +G   
Sbjct: 11  EMETFLTVAKTGSLSGAARELGLTPSAVSRMMTRIEKRLGVRLLVRSTRKLYLTSEGESY 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE T+  + + +  PSG ++++T     +  +    KEFL  YP+I+I++
Sbjct: 71  ALAARRILKDLEETERAIADRA-SPSGLIKVSTPTAYSRLTMIPLYKEFLQRYPNIKIEV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +K  +++  + D AIR   P+  S+L  R+L        A P+YL     P +  +L
Sbjct: 130 EVSDKISNVADGHIDVAIRF-GPLPDSNLTARRLGETGRTIVATPNYLAQAGSPKTPADL 188

Query: 187 DKHNLITF 194
              N + F
Sbjct: 189 QHFNCLDF 196


>gi|77458589|ref|YP_348094.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382592|gb|ABA74105.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 301

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 137/288 (47%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F +V  +GS T AA QL  ++S +S++I+ LE  +G  +  R  R   LTE G   +
Sbjct: 1   MQSFVMVVDTGSITEAARQLGTAKSMVSQRIAQLEKRLGSIVLER-GRQARLTEAGEVFY 59

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +  ++E  +  +        G LR+A  +      L   L  F + YP++++ + 
Sbjct: 60  RYCVRILSEVEEAEDAVLAFQSSLRGSLRLAAPMAFSIRYLTPILSSFAVRYPELRLDIE 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186
            D++ +++  +  D AIR+ + +  SSL+  K +T + H   A+P YL     P + QEL
Sbjct: 120 FDDRHVNLHEERYDAAIRIGE-LPDSSLVA-KTITANRHIICASPDYLAAHGTPQTPQEL 177

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H  + + +  P  M    W   V+  +   R+ C ++ N+   +M+    G G+A+LP
Sbjct: 178 SEHFAMLYVNREPHGM----WTLPVNNALESFRVRCRMRTNNGHQLMEAAKAGMGLAILP 233

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++      +  L  ++         +   Y  + + + KL+A  +F+
Sbjct: 234 TFLAAQAIVDGELQEVLAPYAPRGGNISAVYRRSQRASPKLQALTDFL 281


>gi|107026665|ref|YP_624176.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692145|ref|YP_837678.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896039|gb|ABF79203.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650145|gb|ABK10785.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 319

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 135/290 (46%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  + G TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVANTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +   ++  KL    +  YA   YL      
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATHDYLATHPPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +       N L  +DR +     + L+  S ++ +   + G G
Sbjct: 190 TCTDDLARHAFISYVDDLAFS----NELLYLDRAV-PGATAGLRTTSVIAQVFAALQGGG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++    P LV ++ + +  +   +    E L+   ++ A  +++
Sbjct: 245 LAILPCFMAATQPALVPVLPNDVVVTRCFWLTCREDLRKLRRVTALWDYL 294


>gi|254503524|ref|ZP_05115675.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222439595|gb|EEE46274.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 305

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 136/297 (45%), Gaps = 10/297 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V   G+ + AA  L +S +  S +IS LE  + ++LF R  R L+ TEQG+ 
Sbjct: 5   ENIRTFLRVYELGNMSAAARDLRISSAVASSRISQLEEHLNVRLFQRTTRALSPTEQGNI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R  +++   +E  + E+   +  P G L +A  I +GQ+L+   +  F   +P I I+
Sbjct: 65  FYRGATKIMEAVEEAEAEITNMTRSPRGTLFVAAPISMGQSLIAPAIPTFKADHPLIDIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A  L  P + S+L  RK+        A+P Y+    +P S  +
Sbjct: 125 LRLSDRKVDLTGEGLDAAFFLGVP-EDSNLKIRKIADCQRILCASPDYIAKTGQPASSAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L            P   E F W   ++ P G  RI      + +    +  + + G GI 
Sbjct: 184 LSTGKFDCLNMRYPGAPE-FQW--PLETPEGVKRIPVKGPFESDHGDVLTAWALEGHGIV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L P + V +   +  LV+++E        +   Y    +   K++ F +F+    +D
Sbjct: 241 LKPVFEVAEHLKSGRLVQVLESAPPIPVQMACLYTHRRRQDPKVRLFIDFMVSHIQD 297


>gi|209548369|ref|YP_002280286.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534125|gb|ACI54060.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 306

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 1/197 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +   +D++R F  VA  G+ +  A +L + QS+++R ++ LE  VG+ L  R  R +TLT
Sbjct: 4   VGLSFDRMRTFVRVAERGNLSMVARELDVGQSTVTRHLNKLEEAVGVPLLSRTTRRVTLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+GS+ +    ++   +E    E +++   P+G +R++ T  LG   +   + EF   +P
Sbjct: 64  EEGSRYYTNCLQILRLVEQAAEEARDARQAPAGGVRLSCTAALGVMHVTRMIFEFQDRHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ L L ++ ID+  +  D A+RL  P+  S++    +         AP YL     P
Sbjct: 124 DIRVDLNLTDERIDLVREAVDVALRL-GPLADSAMKLHAIGESQRLLVGAPAYLSARGRP 182

Query: 181 LSIQELDKHNLITFGDL 197
               +L ++  +   ++
Sbjct: 183 QRPADLSRYETVVMSNV 199


>gi|153007799|ref|YP_001369014.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151559687|gb|ABS13185.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 304

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 8/290 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT TE G  
Sbjct: 5   DNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI+++
Sbjct: 65  FYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDKYPDIEVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P S  E
Sbjct: 125 LRLSDHEVDIMSEGVDVAFKL-GVLENSNLRMRGIMNCERVICAAPAYLEKHGVPQSPDE 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L  DKH+ +      P   E F  L T +             +    + Q+ + G GI  
Sbjct: 184 LLGDKHDCLLL--RFPGSKEYFWSLQTAEGLRKFEVTGPFDSDDGDVLTQWALGGRGIIN 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P + VK+   +  LV I+E        +   YP       K++   +F+
Sbjct: 242 KPLFEVKEYIRDGRLVPILESTPPAPIQLAAIYPHKRFQDPKVRLIIDFM 291


>gi|315500544|ref|YP_004089346.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
 gi|315418556|gb|ADU15195.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 302

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 10/290 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  WD LR+   + R G+ + A + L LSQ ++ R++   ET  G +LF R  RGL  T 
Sbjct: 14  NLSWDDLRLVLAIHREGTLSAAGKTLDLSQPTMGRRLEAAETAFGERLFQRTTRGLVATG 73

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +      +  ++      L  +    SG +R++++     ++L    + F+  +P 
Sbjct: 74  LGLAVAEHARAMEDEVLALSRRLSGAQQALSGIIRVSSSEWFFNHVLMPVFEGFMADHPQ 133

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+ ++D + +D+    AD   R     + ++ +QRKL  I    YA+  YL     P 
Sbjct: 134 VVIEAVVDTRALDLDRREADLVFRFGGFTECNA-VQRKLTHIDYGLYASASYLNRHGLP- 191

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E + H LI   + +   + D  WL  +  P+  P     + NS        V G G+
Sbjct: 192 EAGEGENHQLILMDEALGH-LSDVIWLQRL-LPLARP---VFRSNSRDLQALAAVGGRGL 246

Query: 242 ALLPDYIVKDNP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP  I +  P  LV +     TP   V+  Y   LK   +L+A  +++
Sbjct: 247 AVLPTRIAR--PLGLVPVDLGEETPGREVFVGYHADLKPMARLRALIDYV 294


>gi|146338102|ref|YP_001203150.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146190908|emb|CAL74913.1| Putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 300

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 124/286 (43%), Gaps = 30/286 (10%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR G F  AA      ++++SR+++ LE  + I+L  R  R L LTE+G  L   T
Sbjct: 13  FTLVARYGGFGRAARASGRPKATLSRRVAELEASLDIRLIERGGRALKLTEEGRALFERT 72

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L+ T   +      P G+LRI+  +   Q  +      F L YP++++ +  D+
Sbjct: 73  GALLTELDETVGAIASGGQTPRGRLRISAPLLFSQTAMGKLAASFALRYPEVRLDVTTDD 132

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQR-----KLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D+  +  D  IR+  P    SLI R     ++V +   A A P    + R       
Sbjct: 133 RTVDMVEEGYDLVIRV-NPAPDDSLIGRIFLRDRMVVVAHPALARPDDATSVR------- 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
                ++   D I       +W   V  P G  RIS    L++ S + +      G G A
Sbjct: 185 ----AIVRSSDQI------TSW--AVTGPAGPARISVEPILRLTSLIMVRDAVRAGVGAA 232

Query: 243 LLPDYIVKDNPNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAF 286
            LP  +   +    R++   DV  P   ++  YP     + ++ AF
Sbjct: 233 CLPLSLASHDLAAGRLVHWADVDAPPVALWTLYPSRRLLSPRVSAF 278


>gi|194367725|ref|YP_002030335.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194350529|gb|ACF53652.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 297

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 103/192 (53%), Gaps = 3/192 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R F  V  +GSFT AA+ L +S+++ ++ +  LE  + ++L  R  R +++T  G+
Sbjct: 4   FEAMRAFARVVETGSFTRAAQTLQISRTTATQLVQQLEAHLRLRLLNRTTRRVSVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   + +  +LE  +  L +++ +P G+LR+       +  L   L +F   YP+IQ+
Sbjct: 64  AYYPRIARLLAELEEVEGGLGDAATQPRGRLRVDVPGPYARLRLVPALPDFQARYPEIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++++D+  D  DC IR   P    +L+ R L  + +  +A+P Y++    P   +
Sbjct: 124 DIGVSDREVDVIADNVDCVIRGGTPA-DPALVARPLGALPIGFHASPGYVQRFGLPADPR 182

Query: 185 ELD--KHNLITF 194
            L+   H+++ F
Sbjct: 183 ALEGPDHHMVGF 194


>gi|73541604|ref|YP_296124.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72119017|gb|AAZ61280.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 281

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 121/283 (42%), Gaps = 19/283 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  WD L     + R+GS++  A +L ++ ++  R+I  LE  +G  +  R      LT 
Sbjct: 5   TVSWDDLLTLSTLIRAGSYSACARELDITHATAIRRIRRLEEALGKPVATRSEGAFELTS 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++         E++ +    SG +RIA T  LG + L   L      +PD
Sbjct: 65  AGRSALTAARQMEQSAGRLLREIEGAGSGVSGVVRIAATAALGSHFLTPRLPGLYAAHPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L LD++   ++  +A  AIRL +P +   + QR + T+    Y +     +   PL
Sbjct: 125 IVVRLELDDRVASLARRHAHLAIRLARPKEDDVVAQR-VGTVRFGLYGSASVPMDDSTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                    L+  G  IP+      W      P+   R      N+ L+I +    G G 
Sbjct: 184 C-------ALLDEGYDIPEA----TW------PLHAKRRIAFHANNMLAICEGVRAGLGT 226

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           ALLP Y+ +++  L R++ +V      ++  YP   +   + +
Sbjct: 227 ALLPHYVAREDAGL-RLLHEVPEVMREIWLAYPTEFRGASRFR 268


>gi|26988583|ref|NP_744008.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24983357|gb|AAN67472.1|AE016374_4 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 312

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 20/297 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L  F   A  GSF  AA +L L+ +++ + ++ LE  +G++LF R  R LTLTE G 
Sbjct: 6   FSALECFIRSAEVGSFAEAARRLSLTPAAVGKHVAQLEARLGVRLFQRSTRKLTLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     S+ +  ++     L  +  +P+G LR++     G+  +   L EFL  YP I  
Sbjct: 66  RFLGEVSDSFRTIQYAVANLASAEGQPAGSLRVSMGTVFGRLYVLPLLGEFLRRYPAITP 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+     D AI     +    ++ RKL   H    AAP YL+        Q
Sbjct: 126 DWHFDNRQVDLIGQGFDAAIGGGFEL-PPGVVARKLTPAHRVLVAAPAYLQRHASIEDPQ 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM---QYCVL---G 238
            L +H+ I      P+     +W  T      +P    LQ+   +++      C +   G
Sbjct: 185 ALQRHDGILVRS--PQTGRVRSWPLTSRWQAQQP----LQLRQAMTMSDSDAACAVAEQG 238

Query: 239 SGIAL--LP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIAL  LP    Y++     L+R++ D       +   + E     GK +AF +F+
Sbjct: 239 LGIALVSLPFAVPYLLAG--RLLRVLPDWYVDDGHISLYFAEHKLLPGKTRAFIDFV 293


>gi|320656120|gb|EFX24032.1| transcriptional activator TtdR [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 310

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +    P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTHPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|283786511|ref|YP_003366376.1| glycine cleavage system transcriptional activator [Citrobacter
           rodentium ICC168]
 gi|282949965|emb|CBG89593.1| glycine cleavage system transcriptional activator [Citrobacter
           rodentium ICC168]
          Length = 305

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIQWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   S
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGDKPLKS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIAL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GIALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|241764668|ref|ZP_04762681.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241365888|gb|EER60531.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 319

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 136/301 (45%), Gaps = 26/301 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR++S LE ++G++L  R  R L+LT+ G
Sbjct: 7   DLNDMLYFAEVVERGGFAAAGRALGIPKSRLSRRVSELEAQLGVRLLQRTTRKLSLTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +    +     + +   +P G +R++  + L Q +L   + EFL  +P ++
Sbjct: 67  EAYLRHCQAMRESAQAAADTVAQVQTEPQGTVRLSCPVTLAQTVLAELMPEFLARWPRVR 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ + N+ ++   +  D A+R+R  +  S S++ ++L        A+P  L     P +
Sbjct: 127 IEMQVSNRAVNPVEEGVDVALRVRPSLDDSGSMVVKRLDDATQILVASPDLLARQGTPRT 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----------PRISCLQVNSYLSIM 232
           +++L + + I    +  + M          R IGE          PR      +  L++ 
Sbjct: 187 LEDLTRLDSIAMSAVDGRSML---------RLIGEGGREQTLHHHPRYVA---DDLLTLK 234

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + G+G+  LPDY+ ++      LV ++     P   V+  +P     +  ++ F +F
Sbjct: 235 FAALAGTGMCWLPDYMCQEEVRAGRLVHLLPGWAPPRGIVHAVFPSRRGLSPAVRRFLDF 294

Query: 290 I 290
           +
Sbjct: 295 L 295


>gi|218529953|ref|YP_002420769.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218522256|gb|ACK82841.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 297

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 129/282 (45%), Gaps = 21/282 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VA+ G F  AA      ++++SR+++ LE  + ++LF R AR L LTE+G  LH  T
Sbjct: 9   FNLVAQHGGFGRAARAAGRPKATLSRRVAELEASLALRLFERGARILKLTEEGRALHERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  T   +     +P G+LRI+  +   Q+ +      F L +P++++++  ++
Sbjct: 69  KVLLMELSETAAAIATGGDRPRGRLRISAPVLFSQSAMAKLAVGFALKHPEVRLEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  IR+  P    SL+ R  +   +   AAP  ++   +           
Sbjct: 129 RAVDMVEEGYDLVIRV-NPDPDESLVGRIFLRDRLVVVAAPSMVRPTGD----------- 176

Query: 191 LITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQY---CVLGSGIALLPD 246
             T   +I   ME   +W   +  P G   ++   V S  S+M        G+G   LP 
Sbjct: 177 -ATAPAVIRGPMEGSMSW--NMKSPAGRSSVTAEPVLSLPSLMMVRDAVRAGAGAGRLPL 233

Query: 247 YIVKDNPNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAF 286
            +V  +    R++   D+  P  T++  YP     + ++ AF
Sbjct: 234 SLVSHDLAAGRLVLWGDLDRPEITLWTLYPSRRLLSARVSAF 275


>gi|103488617|ref|YP_618178.1| LysR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98978694|gb|ABF54845.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis
           RB2256]
          Length = 308

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 122/292 (41%), Gaps = 13/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA   SF+ AA  L +S S+IS+ I  LE  VG  LF R  R + LT+ G  
Sbjct: 13  DGIEAFLRVAERRSFSAAAADLGVSPSAISQTIKALEARVGAPLFMRTTRSVGLTQAGEM 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +  Y  L       +    +P+G+LRI       Q L +  +  F   YP+I+++
Sbjct: 73  FFERAAPAYSGLADAYEAARNLGNRPAGRLRINLMRGAVQPLFEPIIAGFCETYPEIELE 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D+   D+S    D  +R+ + + +  +  R           AP Y      P + + 
Sbjct: 133 IYADDALSDLSAGGFDAGVRMGESLDADVVAVRLTGPFRFVVAGAPSYFARHGRPATPEA 192

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L +H  + F    G L+P   E  N     D  +  P I    VN + + +     G  +
Sbjct: 193 LREHRCVRFRLATGALMPWTFEKGNR--EFDVAVTGPVI----VNDWSASLVAMRTGVAL 246

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ + +     D   +  ++ D    +  ++  YP   +   KL+AF +++
Sbjct: 247 GMMAEPMATAMVDAGEIELVLTDYAASTSGLFLYYPGRKQVMPKLRAFIDYV 298


>gi|330879634|gb|EGH13783.1| transcriptional regulator, lysr family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 301

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 136/300 (45%), Gaps = 20/300 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF+ AA  L +S S++S  + GLE+ + ++LF R  R + LTE G +L
Sbjct: 8   ELTAFVAIAEQRSFSGAARMLGVSPSALSHSMRGLESRLELRLFNRTTRSVALTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +   LE    ++      PSG +R++ +    + L++  +  FL   P I I+ 
Sbjct: 68  FRRVQPLLGDLECAVNDVTSERNTPSGLIRLSASESSFKLLIRHVMPRFLKDNPQIHIEC 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185
           + D++ +DI  D  D  IRL   +    +  R    I   A A+P YL     P++   +
Sbjct: 128 VADSRLVDIVADGFDAGIRLFDDVPRDMIAVRFGPDIRFAAVASPEYLSRHPAPVTTPHD 187

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H  I F    G L    ++     A++D  +  P    + +++   + +  + G GI
Sbjct: 188 LKAHRCIRFRFASGTLFRWDLDHQGRSASID--VDGP----MTMDNINLMAEAALAGIGI 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LP++ V ++     LV ++ D   P +T     YP        L+ F   +    RDW
Sbjct: 242 AWLPEHQVAEHLQAGRLVHLLPD-WGPRYTGACLYYPANRHPPMALRMFAEAL----RDW 296


>gi|322514465|ref|ZP_08067505.1| LysR family transcriptional regulator [Actinobacillus ureae ATCC
           25976]
 gi|322119628|gb|EFX91696.1| LysR family transcriptional regulator [Actinobacillus ureae ATCC
           25976]
          Length = 298

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 138/290 (47%), Gaps = 14/290 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L YR  R +T TE G  
Sbjct: 5   NAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLYRTTRKITPTEAGLF 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+IQ+ 
Sbjct: 65  YYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFIATYPNIQLN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P  +++
Sbjct: 125 IEFSDRRVDVVAEGYDLVLRIGS-LEDSSIVAKRIAQSELILLASPEYLDKHGTPEILEQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H+ + + +          WL    D+ I  +P    L  N Y +++Q    G GI  
Sbjct: 184 LAQHSCLLYEN-------HQQWLFVDNDQKIKFKPTPHILSNNGY-ALLQMAKAGQGIVN 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++ KD+    NLV ++      S  +   YP     + K+K    F+
Sbjct: 236 LPLFLAKDDLTAGNLVEVLPQYKQNSIDISILYPHRRYLSPKVKVLIEFL 285


>gi|320325256|gb|EFW81323.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327761|gb|EFW83769.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 306

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 131/287 (45%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F+++A+ GS    A +L ++  +IS+++S LE  +G +L  R  R ++LT +G    
Sbjct: 7   LSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEARLGTRLVNRTTRSMSLTAEGELYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +++  +  +  SS  P G +R+  ++  G+  +   L  F   YP++QIQL 
Sbjct: 67  SHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQLE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+++   D  IR    +  ++   RK+ +      A+P YL+    P  + EL 
Sbjct: 127 ISDHPLDLAIHGFDLGIRF-GSLPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAELQ 185

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN I    +  P  +  F+             + C   N     + + + G GI L  +
Sbjct: 186 HHNCIFLRQNETPYGVWSFSNGGRTQNVKVHGALGC---NDGEVALNWALEGFGILLRAE 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +     +  L  ++ED       VY  YP+ L  + +++   +F+
Sbjct: 243 WEIARYVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRCLIDFL 289


>gi|307729427|ref|YP_003906651.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583962|gb|ADN57360.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 323

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 130/286 (45%), Gaps = 21/286 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR  S   AA      ++++SR+++ LE  +G++LF R +RGL LT++G  L+  T
Sbjct: 9   FNLVARYESLGEAARATGRPKATLSRRVTELENSLGLRLFERGSRGLKLTQEGRALYERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  +   +     +P G+LRI+      Q  +   +  F L YPD+++++  ++
Sbjct: 69  GALLSELTESAAAIASGGEQPRGRLRISAPALFSQIAMGKLVATFALKYPDVRLEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK-NCREPLSIQELDKH 189
           + +D+  +  D  IR+  P    +LI R  +   +   A P   +   +  + +    +H
Sbjct: 129 RPVDMVEEGYDLVIRV-NPDPDENLIGRVFMRDRLVVVARPDMARPKGKSSVPVVVRAEH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +             +W   V  P G+ RI+   V   +S + +     LG G A LP 
Sbjct: 188 ERVA------------SW--QVTGPRGQARIAVTPVACLSSLIMVRDTVRLGVGAARLPL 233

Query: 247 YIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +V  +    R+    DV  P   ++  YP     + ++ AF + I
Sbjct: 234 SLVSHDIAAGRLAHWGDVEGPDIALWALYPSRRLLSARVSAFLDHI 279


>gi|260599888|ref|YP_003212459.1| putative transcriptional regulator [Cronobacter turicensis z3032]
 gi|260219065|emb|CBA34420.1| Putative transcriptional regulator [Cronobacter turicensis z3032]
          Length = 303

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 132/302 (43%), Gaps = 19/302 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR GSFT AA QL ++QS++S+ I+GLE  + ++L  R  R ++LT
Sbjct: 1   MKRNLNDLFSFVTVAREGSFTRAAAQLGVTQSALSQAIAGLENRLKLRLLTRTTRRISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L       + ++E     L     KP+GK+RI     +   LL   L   L  YP
Sbjct: 61  AAGERLLEAIGNRFDEIEAELDMLSALRDKPAGKVRITCDPHVLHALLLPKLTPILRDYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ++   ++   DI  D  D  +RL   I    +       + M A A+P Y      P
Sbjct: 121 DIQMEFDANHGFRDIVADRFDAGVRLGGTIDKDMIAVPIGPPMRMAAAASPAYFAAHPVP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  +L  HN I     +      + W     D P+       L  N+   I+   + G 
Sbjct: 181 QTPHDLVHHNCINL--RMTSAGGLYVWEFDDKDGPVNVRVDGQLIFNTSSHIVHAALDGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP-------------EALKNTGKL 283
           GIA LP+    D+    NLVR++E    P    Y  YP             EALK TG  
Sbjct: 239 GIAFLPEGEFDDHFNAGNLVRVLETWCAPFPGYYLYYPSRKQPSPAFSMVVEALKETGSR 298

Query: 284 KA 285
           KA
Sbjct: 299 KA 300


>gi|167590163|ref|ZP_02382551.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 313

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 97/184 (52%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  SGSF  AA ++ +++S++++ ++ LE  +G++L  R  R L+LT++G   +   
Sbjct: 11  FVEVVESGSFAAAALRIGVTRSAVAKIVARLERRLGVRLLQRTTRRLSLTDEGLVYYEQC 70

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             V  +L  T+  L     +PSG+LRI+  +  G+  +   ++  +  +P +++++   +
Sbjct: 71  RRVLAELGETEAALDAGRREPSGRLRISAPVLFGRQCVAPVMRRLVERHPRLEVEMSFSD 130

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D+  D  D A+R+   + +++L+ R L    M   A+P YL     P   ++L  H 
Sbjct: 131 RIADLVNDGFDVAVRVGPLVDTTALVCRPLGMQQMGICASPAYLAQHGRPAGFEDLASHV 190

Query: 191 LITF 194
            I +
Sbjct: 191 GIAY 194


>gi|330942143|gb|EGH44799.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 304

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 25/276 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR  SF  A  ++ +S S++S  + GLET +GI+L  R  R +TLT  G +L  + 
Sbjct: 14  FLAIARHQSFRKAGLEVGISASALSHAMKGLETRLGIRLLNRTTRSVTLTAAGEELQGLI 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S   + +      L     +P+G++R+    D  + LL   L  F+  YPDI++ L + N
Sbjct: 74  SSPVNDIGQALETLNRLRDEPAGRIRLNVLSDGAKLLLGPVLPVFVDRYPDIEVDLTVTN 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +DI  D  D  IR    + +  + QR    +      AP YLK    P    +L +H 
Sbjct: 134 RMVDIIGDGHDAGIRFGGTVPADMIAQRLSPDVAWAVVGAPDYLKRFGIPKHPSDLYQHR 193

Query: 191 L--ITFGDLIPKCMEDFNWLAT-------VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              I  G+        ++W  +       +D P G   I   +V   +++      G G+
Sbjct: 194 CLRIRLGN-----ARIYHWQFSKEGQQLEIDAP-GAVTIDETRVGVAMTMR-----GVGL 242

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI--TPSFTVYFC 272
             +P ++V+      +L R++ED     P F +Y+ 
Sbjct: 243 MYVPAWVVERQIAEGSLHRVLEDWTHHEPGFHIYYS 278


>gi|294679149|ref|YP_003579759.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294477965|gb|ADE87352.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB
           1003]
          Length = 297

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 126/293 (43%), Gaps = 11/293 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA   SFT AA +L  SQS++S  +  LE  + ++L  R  R +++TE G +L   
Sbjct: 11  AFLAVAEERSFTRAAARLGTSQSAVSAVVRRLEERLDVRLLTRTTRSVSVTEAGQRLVDA 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
               +  +E     L +   +P G +R+  +    + ++       +  YP+++++++LD
Sbjct: 71  LRPAFDGIEAELAALDDIRARPQGMIRLTASRHAAERIVMPVANRLMADYPEVRVEILLD 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +DI+ +  D  IRL + +    +  R    + M    +P Y      P + Q+L  H
Sbjct: 131 QRFVDIAKEGFDAGIRLGESVDRDMIGVRISGDLQMVVAGSPAYFARHPAPQTPQDLTAH 190

Query: 190 NLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG-IALLPDY 247
           N I     +P     + W    D RP+          N     +   +   G + L+ DY
Sbjct: 191 NCINL--RLPTLGGLYAWEFEKDGRPLTVRVEGQFTTNDPELAVAAALEDRGLVCLMTDY 248

Query: 248 IVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +     +  LVR++ D   P    +  YP   + T    AFR  + + A  W+
Sbjct: 249 LAPHLASGRLVRVLADWCPPFSGYHLYYPSRRQIT---PAFR--LLIDALRWR 296


>gi|262164996|ref|ZP_06032734.1| transcriptional regulator [Vibrio mimicus VM223]
 gi|262027376|gb|EEY46043.1| transcriptional regulator [Vibrio mimicus VM223]
          Length = 310

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 15/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G  
Sbjct: 5   NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRNIRLTHEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T      L+    ++  +  + +G+L I+   DLG+NLL   ++EF+ L+P++ ++
Sbjct: 65  FLAKTQSAIATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIEEFIALHPNVTVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+  +  D AIR  KP  S+ +      +      A+P YL      L   +
Sbjct: 125 LELSDSLTDMYTNPVDIAIRYGKPADSNLVAMLLCDSNERVLCASPDYLATHPPILHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + F  +I   + +  W+ + D   GE     +Q N   +    + +  V G GI
Sbjct: 185 LQHHNCLCF--MIADTLHN-KWILSRD---GETHSVVVQGNPTCNDSDVVHRLAVKGKGI 238

Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A   L D I +D  +  LVRI+ +  +    +Y    +    T  ++AF+ +I  K 
Sbjct: 239 ANKSLMD-ISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEYIRGKG 294


>gi|241766478|ref|ZP_04764347.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241363307|gb|EER58843.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 299

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 125/300 (41%), Gaps = 35/300 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR G  + AAE LHL+QS++S+QI  LET VG+ LF R  + L LT  G +  
Sbjct: 13  LRAFSTVARFGGVSRAAEALHLTQSAVSKQIKDLETWVGVPLFERTRKRLALTPAGERYE 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V  +LE   +EL  S     G L +++    G   L   L +F  L+P I +  +
Sbjct: 73  KAVQAVLLQLEAATLELITSD-DGGGALHLSSLPTFGAKWLIPRLPQFQRLHPQITLHFV 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D      DC+I   +     +           HA    HYL      L      
Sbjct: 132 PYVNGYDFEQPELDCSILFGEGHWPGA-----------HA----HYLTGNDVALIA---P 173

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP------------IGEPRISCLQVNSYLSIMQYC 235
           +  +  +    P  +  +  L  V  P             G   ++  Q + + ++++  
Sbjct: 174 RTRVADWPIHTPSDVAGYTLLRHVTVPAAWALWSETHGVTGLKLLAGPQFDQFQTMIRAV 233

Query: 236 VLGSGIALLPDYIVKD--NPNLVR--IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + G G+AL+P  +V+D     LVR  +       +   +FCYPE       L++FR ++ 
Sbjct: 234 MAGMGLALVPRCLVQDEITAGLVREPLPAGGYQSALGYWFCYPEGRNPLHPLQSFRQWLL 293


>gi|88800156|ref|ZP_01115725.1| putative transcriptional regulator [Reinekea sp. MED297]
 gi|88777137|gb|EAR08343.1| putative transcriptional regulator [Reinekea sp. MED297]
          Length = 305

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 1/191 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW +   F V+AR+GS   AA+ L +SQ ++SR +  LE  +G  LF R  RGLTLT  G
Sbjct: 5   DWQQWHFFTVIARTGSLNQAADALGVSQPTLSRHLQSLEARLGQNLFDRSTRGLTLTAFG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L     ++    +  +          SG++R++    + Q  L   L  F+   P + 
Sbjct: 65  ASLMEGCQQMEQTAQALERRASGQDQALSGRVRLSVNEMIAQYYLPNILPAFMDANPQLS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ + N+   +    AD A+R+  P Q   LI R L  I +  YA+  YL     P + 
Sbjct: 125 VEIEVTNRASSLDKRDADIAVRMFPPTQ-LDLIARHLYDIPLGFYASQGYLDRFGTPTTP 183

Query: 184 QELDKHNLITF 194
           + L +H ++ +
Sbjct: 184 EALLEHRIMGY 194


>gi|293392475|ref|ZP_06636795.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291424877|gb|EFE98086.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 301

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 7/243 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  V  SGS   AA +L ++  S SR+++ LE E+G +L  R  R ++LT++G++  
Sbjct: 6   VQLFLTVTESGSLAQAARRLGITPMSASRRLAALEQEMGKRLIQRTTRAISLTQEGAEFI 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E+ +     +S   SG LRI     LG   L   L   L   P+++I L 
Sbjct: 66  PYARAIAEAEESAKALFLPNSKGASGLLRITAPSGLGNRTLLPLLPTLLANNPEMRIDLQ 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI     D A+R+  P++ SSLI RK+        A+P YL     P SI +L 
Sbjct: 126 LSDEVVDIVGRGIDVAVRV-APLRDSSLIARKIADNPRILCASPDYLALHGSPRSINQLG 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ +   + +P+   D +   T     G  R SC  V     I   C+ G G+A L  +
Sbjct: 185 QHHCLRLSN-VPQWSFDIDGQITGCSVDG--RFSCSNVE---GIRALCLQGVGLAQLSRW 238

Query: 248 IVK 250
            VK
Sbjct: 239 DVK 241


>gi|218509279|ref|ZP_03507157.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 298

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 123/295 (41%), Gaps = 17/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR GSFT A ++L ++Q+++S QI  LE  VG  LF R  R + LTE 
Sbjct: 7   FPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTET 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E +  L       ++S     G L I++T       L   L  F L +P I
Sbjct: 67  GERLAPKVTEAFAMLHDAMATARDSV---DGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++    +  ID + +  D  IR         L    L+ +      +P   ++      
Sbjct: 124 AVRFQASSDIIDFAREQIDVGIRWGDG-NWPGLALHWLMGLEFTPMLSPKLAESAGGIKE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++L K +L   GD+  K   +   +   D   RP         Q+ S        + G 
Sbjct: 183 PRDLLKFDLFDAGDVWWKQWFEAAGVTETDLDRRPRN-------QLGSQAVEADAAIAGH 235

Query: 240 GIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+A+L          L R+    E   +     +  YPE  +N  K+KAFRN+I 
Sbjct: 236 GVAILHPAFYTAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWIL 290


>gi|170701329|ref|ZP_02892293.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133779|gb|EDT02143.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 290

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 137/290 (47%), Gaps = 21/290 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR  SFT AAEQL L+Q ++SRQI  LE   G  LF RHA+GLTLT +G +L 
Sbjct: 10  LQIFSTVARHRSFTRAAEQLCLTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V  E + ++E   ++L       +  L++ T +      +   +  F   +PD+ +Q+ 
Sbjct: 70  PVVDESFSRIEDISMKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D S +  D A+ +      + +    L    +    AP  L+      ++ +L
Sbjct: 125 TAWQHVVDFSTEPFDAAV-VYGTSPGAGVFALPLFDERLTPVCAPE-LRQVAPLDAVGDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---MQYCVLGSGIAL 243
            +H L+          +  +W A +D   GE  +   +  ++ ++       + G G+A+
Sbjct: 183 ARHTLLH------PTRDHRDWRAWLDH-AGERAVDAERGPTFDTLDLATNAAMQGFGVAI 235

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               +V D+ +   L R  + V+      +F YPE L +  K++AF ++I
Sbjct: 236 GDVTLVDDDVSARRLERPFDIVLETGARYFFVYPENLASQQKIRAFSDWI 285


>gi|78063595|ref|YP_373503.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971480|gb|ABB12859.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 318

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 1/183 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A  GSF  A   L ++ +++S+ ++GLE  +G++L  R  R L LT++GS   R  
Sbjct: 13  FVHAADGGSFAAAGRMLGITSAAVSKNVAGLEQALGVRLMNRTTRTLKLTDEGSVFLREA 72

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 L++    +    + P G++RI+T+   G+  LQ  L   L  YP + ++   D+
Sbjct: 73  RIALDALDSAVDSIVAQRLGPQGRVRISTSAAFGREHLQPVLPGLLARYPGLSVEADFDD 132

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  D  D  IR    I  S+L+ R +  ++    A+P YL +   P +  +L  H 
Sbjct: 133 RIVDVVRDGYDIVIRGGN-IHDSALVSRPIFRMNTVLVASPAYLASHGIPRAPDDLGAHR 191

Query: 191 LIT 193
           LI 
Sbjct: 192 LIA 194


>gi|322509871|gb|ADX05325.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
          Length = 300

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 20/300 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT++G +
Sbjct: 6   EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YPDI+I+
Sbjct: 66  FLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P   +E
Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVWKSRLYIVASPDYLALKGTPTQPEE 184

Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L++H+LI F      +  P  + D  + A           S ++ +S  ++ Q  + G G
Sbjct: 185 LEQHDLIGFTRPTYINSWPIKVGDEYFFAQ----------SKIKASSGETVRQLTIRGHG 234

Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ I KD     L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|193077075|gb|ABO11838.2| putative LysR-family transcriptional regulator [Acinetobacter
           baumannii ATCC 17978]
          Length = 306

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 139/299 (46%), Gaps = 33/299 (11%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +   GSF+ AA+QL++ +++ S  I  LE  +  +L  R  R +  +  G 
Sbjct: 4   FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELENNLQCRLLERTTRHVRPSLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPDI++
Sbjct: 64  AFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P   +
Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGTPEQPE 182

Query: 185 ELDKHNLITFGD-----------LIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLS 230
           +L  H  + F             ++    +D+   +W+A  D             N  LS
Sbjct: 183 DLLSHYCVNFFSTSGGRNYPFELMVNGKKQDYFLKSWIAVNDAE-----------NYVLS 231

Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +Q    G+G+  +P Y V +   N  LV ++ +  +P  +V   YP+  + + +++ F
Sbjct: 232 ALQ----GAGLIQVPHYHVANELKNGRLVEVLSEWESPKMSVSALYPQHRQLSPRVRVF 286


>gi|170700819|ref|ZP_02891809.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134267|gb|EDT02605.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 313

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP + ++L 
Sbjct: 67  DRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P S+++L
Sbjct: 127 LSQHVPDIIDEGYDVSLQLSSAELPDSGLVSQRLGDVHSVLCASPAYLKERGTPRSVRDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H+ +    + P    D  W   +D P G    E  +   QVN   ++      G GI 
Sbjct: 187 EAHSCLQI--VTPIFPRD-RW--HLDGPDGRETFELPLPDFQVNIADALGAALRAGLGIG 241

Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ +      TVY  Y        K++ F +F+
Sbjct: 242 SLPMSSAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292


>gi|165976329|ref|YP_001651922.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303251233|ref|ZP_07337411.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303253055|ref|ZP_07339206.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247898|ref|ZP_07529933.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307252535|ref|ZP_07534431.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|165876430|gb|ABY69478.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|302648087|gb|EFL78292.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302649775|gb|EFL79953.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306855589|gb|EFM87757.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306860127|gb|EFM92144.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 294

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 93/191 (48%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  +FT AA +L +SQS++SR I  LE+ +G++LF R  R L+LT  G
Sbjct: 6   NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L +   + + KL+     L      PSG++RI  +      +L   L +F   YP+IQ
Sbjct: 66  NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D    DI  +  D  +R    +    +  R      M    +P Y      P + 
Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPRTP 185

Query: 184 QELDKHNLITF 194
            +L  H  + +
Sbjct: 186 SDLAHHQCLNY 196


>gi|163735608|ref|ZP_02143039.1| Transcriptional regulator [Roseobacter litoralis Och 149]
 gi|161391036|gb|EDQ15374.1| Transcriptional regulator [Roseobacter litoralis Och 149]
          Length = 292

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 133/290 (45%), Gaps = 40/290 (13%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   + A++   GSF  AA +L LS S +S  +S LE  +G+ L YR  R LTLT +
Sbjct: 3   DRLRQMAIFAKTIDHGSFRGAARELRLSPSVVSHHVSQLEEILGVALIYRSTRKLTLTSE 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L   T ++   +E   ++L  S+  PSG+LR+     L Q+     +  F   YP  
Sbjct: 63  GHRLLAATHKMLEAVEGELVDLSVSASAPSGELRVTIPSVLSQSNFTEQIAAFSRTYP-- 120

Query: 123 QIQLILDNKDIDISM--DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+L LD  D   ++  D  D AIR+  P   ++   RKL ++     A+  YL      
Sbjct: 121 RIKLFLDFSDTRRALIDDGFDIAIRM-GPKAKNTATSRKLFSVERKLVASAEYLS----- 174

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV---DRPIGEPRISCLQ----------VNS 227
                      +  G   PK +  ++WLA     + P+   +   +Q           N 
Sbjct: 175 -----------LRPGPDDPKDLIGWDWLALTPAQNVPLEFGKSGGVQATIKPEAHIFAND 223

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
             ++ +    G+G+A++PD++  ++    ++  ++ D    +  V+  +P
Sbjct: 224 AQALYRLARAGAGLAIVPDFLASEDVEAGSMSYVLPDWKLRAIDVFATWP 273


>gi|149201380|ref|ZP_01878355.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
 gi|149145713|gb|EDM33739.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
          Length = 293

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 16/299 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYNVARIGTVSGAAEVLGVHHATVIRHIDALEERLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRV---TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             L RV   T + +++L   +I+ Q + V  SG+L + T++    +LL   L  F  +YP
Sbjct: 63  EDLLRVAQATDDQFNQL-AGRIKGQGNDV--SGEL-VVTSVGGLSHLLVPVLAAFQEMYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + ++ +  ++   +    A  AIR    P Q  +++Q          YA+  Y+     
Sbjct: 119 ALVVRYLTGDRLFRLEYGEAHVAIRAGAVPDQPDNVVQ-PFFQQQFTLYASESYVARHGL 177

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P   ++L  H  +   D  PK    F  WL   D   GE  +   +     +     + G
Sbjct: 178 PKGPEDLPHHRFVGADD--PKTRAPFLRWLQ--DNVPGEAIV--FRSGDVHAQRNAILAG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +GI         + P L+++       +  ++      L  T K++AF N +  +A  W
Sbjct: 232 AGIGFTSVLQAAEMPGLIQVTPPRPEWAAPLWLVTHMDLHRTTKVQAFLNHLKERAAAW 290


>gi|190890513|ref|YP_001977055.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695792|gb|ACE89877.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 298

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 132/298 (44%), Gaps = 33/298 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  +GS + A   L  S + +S++I  LE  +G +L  R  R ++LTE G   +
Sbjct: 7   LEIFAKVVSTGSMSLAGRMLGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +  +   S +  G L+++     G+  +  +LK F+  +PD+ I L+
Sbjct: 67  DRVLGILAGLEEAEFYISGRSAQMHGTLKVSAPTSFGRMHIAPHLKAFMQAHPDLAINLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  DI     D AIR+ + +  SSL+ R+L  +     A+P YL    EP  I +L 
Sbjct: 127 LTDEFSDIIGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLAAHGEPRDIDDLK 185

Query: 188 KHNLITFGDLIPKCMEDFN---WLATVD------RPIGEPRISCLQVNSYLSIMQYCVLG 238
            H          +C+   N   W  T        RP G      L  NS   I +  + G
Sbjct: 186 HH----------RCLPAHNGDAWRLTGPEGALSLRPEG-----MLITNSSEVIREAVISG 230

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
            GIAL   + + +     R+++  + P++      T+   YP       K++ F +++
Sbjct: 231 LGIALRSTWDIGEELKAGRLLQ--VLPAYEGSHNVTLSAVYPSRQFLPAKVRLFIDYL 286


>gi|170743839|ref|YP_001772494.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198113|gb|ACA20060.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 299

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 119/267 (44%), Gaps = 8/267 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R    V   GS + AA  L L+Q ++ RQI+ LE  +G+ LF R   GL  TE G 
Sbjct: 6   WDHCRAALAVLEEGSLSGAARALGLTQPTVGRQIAALEAALGVVLFTRSPAGLLPTEAGL 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +          +  +    +G +RI  +  +G  +L   L      +P + +
Sbjct: 66  ALRPHAQALRAAAAALARTVTAAGEGVAGTVRITASEVVGGAVLPPILARLHEAHPALIL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L ++  D+    AD A+R+  P Q  +L+ RK+ T+ +  +A   YL     P S+ 
Sbjct: 126 ELVLSDRVQDLLRRDADIAVRMTPPAQ-GALLARKVGTVRLGLHAHRRYLARRGAPASVA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H+LI F D     + D         P+   R +  + +S L+ +     G GI + 
Sbjct: 185 ALAGHSLIGF-DAETAFLRDVR---IGGMPLDRSRFAW-RSDSALAQLAAVRAGFGIGVC 239

Query: 245 PDYIVKDNPNLVRIMEDVI--TPSFTV 269
              +    P+LV ++ ++    P+F V
Sbjct: 240 QAGLAAREPDLVPVLPEIGWDLPTFVV 266


>gi|194365455|ref|YP_002028065.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348259|gb|ACF51382.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 305

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 117/260 (45%), Gaps = 20/260 (7%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           FD+   + VF  V   GSFT  A  L  + S +SR ++ LE  +G +L  R  R + LT+
Sbjct: 5   FDYLGDVEVFLAVVEHGSFTAGAVALSTTPSVLSRAVTRLEARLGRQLLQRTTRRVGLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G          +  L+  + ++       +G++R++     G   L   L  F  LYP 
Sbjct: 65  AGRLYLEQVRTAFGLLDDAERDVLAQDGALAGRVRLSVPTTYGHYRLPPVLARFAQLYPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L + N+++D+  +  D AIRL + +  S L+ RKL    +   A P YL+    P 
Sbjct: 125 VQVELNITNRNVDLVAEGFDLAIRLGQ-LPDSGLVARKLEDAPLLLVATPDYLQRRGSPQ 183

Query: 182 SIQELDKHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           ++ +L +H  + F     G L P        D +WL         PR S    +  L ++
Sbjct: 184 TLDDLQQHLCLPFVMPRTGRLAPWIFRDDGRDVDWL---------PRSSIETSDDVLGVV 234

Query: 233 QYCVLGSGIALLPDYIVKDN 252
                G GI    ++IV++ 
Sbjct: 235 SLAEQGIGICQSYEFIVRER 254


>gi|121604246|ref|YP_981575.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593215|gb|ABM36654.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 300

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 131/293 (44%), Gaps = 16/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR   +  + GSF  AA  L +++S IS+ I+ LE + G  LF R  R + LT  G+ 
Sbjct: 5   DALRALVLSKQCGSFAGAARALGVTRSQISKLIASLEADYGGALFARTTRSVALTSAGAT 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           LH    E+       +  +       +G LR+   +  GQ +L   L  FL L+P I+++
Sbjct: 65  LHSYALELLAIDAEAREAMAALQGMVAGPLRVNAPMSFGQLVLAPLLPGFLALHPQIELR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+++ +D      D  +R+ + ++ SSL  R+L  +    YAAP YL+    P S Q 
Sbjct: 125 VELNDRLLDPFEHGFDLTLRIAE-LEDSSLAARRLCGVPRAIYAAPGYLQAQGVPDSPQA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  + +       +             +G P  S    N+   +++  + G+G+ L 
Sbjct: 184 LKAHRCLNYAHTNTGHVWRLGRGGEKAHVAVGGPLCS----NNGEVLLEAAMAGAGLILQ 239

Query: 245 PDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++   +       P L +  E   +P   +Y  YP   +    ++A  +++
Sbjct: 240 PAFLAAGHLASGRLVPVLAQWQE---SPEIALYALYPATRRVPVAVRALIDYL 289


>gi|83951205|ref|ZP_00959938.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
 gi|83839104|gb|EAP78400.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
          Length = 293

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 16/300 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE+L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAYHVARVGTVSGAAERLGVHHATVIRHIDALEERLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       ++      SG L + T++    +LL   L  F   YP++ 
Sbjct: 63  DDLLRVAQATDDQFSQLVGRIRGRGDGVSGDL-VVTSLGGLSHLLVPVLTRFREDYPEVV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +  ++   +    A  AIR    P Q  +++Q   V   +  YA+  Y++    P  
Sbjct: 122 VRFLTGDRLFRLEYGEAHVAIRAGSVPDQPDNVVQ-PFVKQRVALYASRSYVERHGAPKD 180

Query: 183 IQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++  H  +   D  P     F  W+    R          +   + ++ +  + G+GI
Sbjct: 181 LADMANHFFVGADD--PNSRAPFMRWM----REHIPAENIVFRSGDFHALRRAIIEGAGI 234

Query: 242 ALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +     ++  ++V I+   +D  +P + V       L  T K++AF   +   A++W+
Sbjct: 235 GFMFQLQARELDDMVEILPPQDDWTSPLWLVTHM---DLHRTTKVQAFLTVLKEAAKEWE 291


>gi|317053386|ref|YP_004119153.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953125|gb|ADU72597.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 299

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 120/261 (45%), Gaps = 25/261 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  S T AA +LH++  +ISRQI  LE  +G+KLF R  R + LTE+G++ H
Sbjct: 11  LRAFEAAARLSSMTLAAAELHVTHGAISRQIRKLEEHLGLKLFVRLTRQIILTEEGAQFH 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +L  T+   +     P+  +RI+TT+      L   L +F   YPD  IQL 
Sbjct: 71  HAVTRILGEL--TRESERLRRRSPARYIRISTTVSFATKWLAPRLSQFRQRYPDFDIQLD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + + ++D++    D AIR         ++  +++   +    +P Y             D
Sbjct: 129 VTDINVDLNDGQVDAAIRYGLG-HYRDVVSERILDETVTPVCSPGY------------RD 175

Query: 188 KHNLITFGDLIPKC--MEDF----NWLATVDRPIGEPRISCLQVNSY-LSIM--QYCVLG 238
            HN +T    +  C  + ++    NW A  +   GE    C Q   + L  M  +  + G
Sbjct: 176 THNGLTIIQELSGCVLLHEYRMLANWEAWFEMA-GEKNFRCHQGPLWTLGSMATEAAIRG 234

Query: 239 SGIALLPDYIVKDNPNLVRIM 259
            G+AL    +V D+    R++
Sbjct: 235 EGVALGRSVLVADDVAAGRLV 255


>gi|294675928|ref|YP_003576543.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294474748|gb|ADE84136.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB
           1003]
          Length = 296

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 120/280 (42%), Gaps = 24/280 (8%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M F+ WD++R  Y VAR G+ + AAE L +  +++ R +  LET +G KLF RH RG T 
Sbjct: 1   MRFENWDEIRTAYQVARMGTVSGAAEVLGVHHATVIRHVDALETRLGTKLFQRHPRGYTP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L  V      +       +  +  +  G+L I T++     L+   + E +  +
Sbjct: 61  TEAGQQLLAVGQATEDQFAQLAARIAGAGEEMRGEL-IITSLPALAALVMPAMAELMRAH 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P + ++ I D +   +    A  AIR   +P +  +++  +L       YAAP Y++   
Sbjct: 120 PALVLRYITDPRVFRLEYGEAHVAIRAGARPTEPDNVVS-QLGVNRTALYAAPEYIERHG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMED----FNWLATVDRPIGE--PRISCLQVNSYLSIM 232
            P    +L  H  +      P   E     F WLA      G+  P       N   S  
Sbjct: 179 RPKGPNDLAGHRFVG-----PDSRESRAPFFRWLA------GQVPPEAMVFMANEMASQQ 227

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRI---MEDVITPSFTV 269
                G G+  LP    +  P LV +   M D  +P + V
Sbjct: 228 AAIEAGLGLGFLPVLQGRAIPRLVEVVAPMTDWDSPFWLV 267


>gi|238796592|ref|ZP_04640099.1| Glycine cleavage system transcriptional activator [Yersinia
           mollaretii ATCC 43969]
 gi|238719570|gb|EEQ11379.1| Glycine cleavage system transcriptional activator [Yersinia
           mollaretii ATCC 43969]
          Length = 298

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 132/299 (44%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 2   NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 62  YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 119

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    + L   +L    +    AP  L           
Sbjct: 120 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLL----------- 167

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238
           + +H L    DL    +       +W+A   R +G P+I+  Q    +    ++Q  V G
Sbjct: 168 MGEHGLKIPADLAYHTLLHDTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHG 226

Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIAL+ + + +      R++    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 227 QGIALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 285


>gi|225686033|ref|YP_002734005.1| hypothetical protein BMEA_B0178 [Brucella melitensis ATCC 23457]
 gi|225642138|gb|ACO02051.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|326553651|gb|ADZ88290.1| transcriptional regulator [Brucella melitensis M5-90]
          Length = 306

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H
Sbjct: 8   MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 68  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     A P YLK    P +I++L 
Sbjct: 128 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVATPRYLKERGTPQTIEDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP G      LQ NS   + +  + G GIA    +
Sbjct: 187 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 240

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 241 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|326387855|ref|ZP_08209461.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207901|gb|EGD58712.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 310

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 137/311 (44%), Gaps = 46/311 (14%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA+ G FT AA    + ++ +SR ++ LE  +G++L  R  R ++LT+ G + +   
Sbjct: 9   FAAVAQHGGFTAAARATGIDKARLSRCVASLEENLGVRLLNRSTRSISLTDAGQRFYHGC 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             V          + E   +P+G +RI  ++ L QN L   L  +L  +P  ++ +++++
Sbjct: 69  QAVLGSARAAMESIAELQKEPAGIVRIGCSVVLAQNYLAPILPHYLATHP--KVTVVVEH 126

Query: 131 KD-----IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM----------HAYAAPHYLK 175
            D     +D  +D A     + + +  SSL+ R++  +            H +A  H   
Sbjct: 127 GDRWINPLDSDLDLA--LTTMVEALPGSSLVAREIGRVRRILVTGRTSAGHVFAPDHPDI 184

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLS 230
               PL  +  D H+             +  W  T D     R   +PR   L  N    
Sbjct: 185 LAHLPLIARIEDMHD------------GEVRWALTTDDGRDARVAAQPR---LVTNDQNV 229

Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
             +    G+GIALLP+ +V    D+  LV ++ +  TP ++++  YP      G L + R
Sbjct: 230 QFEAAASGAGIALLPESVVASALDDGTLVHVLPEWSTPEYSLHLVYP---LPRGILPSVR 286

Query: 288 NFI-FLKARDW 297
           +FI FL +  W
Sbjct: 287 SFIDFLASHLW 297


>gi|319778072|ref|YP_004134502.1| lysr substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171791|gb|ADV15328.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 301

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 134/296 (45%), Gaps = 18/296 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F   AR GSFT AA++L ++Q ++S Q+  LE E+G++LF R  + L++T  G  
Sbjct: 9   NALKAFEAAARHGSFTRAADELSVTQGAVSHQVKALELELGVRLFDRERQKLSITRAGLS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              V  + + ++      +Q  S   +G L ++T+ D     L   L  F   +PDI ++
Sbjct: 69  YLEVVRDAFDRIALGTQRIQHLS--RAGALTVSTSPDFASKWLVNRLGRFAETHPDIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +      +D + +  D A+R      +   + R L +  + A  +P   +  REP    +
Sbjct: 127 VSATMHHVDFAREDVDLAVRHGDGNWAGHDVVR-LCSEQLFAVCSPKLHQRMREP---SD 182

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIAL 243
           + K  L+   D      +D++ WL      + + R+S   V N    ++   V G G+AL
Sbjct: 183 VLKFPLLHLDD-----RKDWSEWLEAAG--VRDARLSHGPVLNRASMVIDAAVDGQGVAL 235

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               +      N  LVR     +  S T +   P+A     K+  FR ++  +A D
Sbjct: 236 ARTTLAAWDLINGRLVRPFATALRLSKTYWIVCPQATSMVPKIVTFREWLLAEAAD 291


>gi|217972392|ref|YP_002357143.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217497527|gb|ACK45720.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 314

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 28/290 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT  G +
Sbjct: 5   EAAKVFVTIVERGSMVSAANALDMSRSMVTRYLSEMEEWSGARLLHRSTRSLSLTPAGEQ 64

Query: 66  L----HRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +    HR+      +L      +  +SV  P G LRI+ +  L   +L   ++++L  YP
Sbjct: 65  VLDYCHRLL-----ELANEVPAVSHASVAIPRGLLRISCSQFLAHQILAPVVRQYLASYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              + + + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      
Sbjct: 120 QASVNIHVSSQTVDLVAERIDLAIRITNELD-PNLIARRLGECESVVCAAPSYLAARAAV 178

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VN 226
           +  ++L +HN +T   FGD++ +  +          P  +P+++  Q            N
Sbjct: 179 VHPEDLTQHNCLTYSYFGDVMWRFYQADVAAKQAQAPNSDPKLNQGQAFNVPVNGNFSAN 238

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
             + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y
Sbjct: 239 DSMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVY 288


>gi|152996028|ref|YP_001340863.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836952|gb|ABR70928.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 315

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 143/287 (49%), Gaps = 24/287 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ +  FY+ A  G +T A     +++S +SR+++ LE  +GI+L +R++R  +LT+ 
Sbjct: 1   MDFNDIYYFYLTAEHGGYTAAERVSGITKSLLSRRVAQLEERLGIQLIHRNSRQFSLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +  + ++    +      PSG +R++  + L Q+     L EF+  +P +
Sbjct: 61  GVQLYEGAINMVAEGQSAYESVALLQSVPSGVVRVSCPVLLAQHHFTFFLPEFMKSFPQV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + L + ++++ I  +  D  +R R  + Q + ++ +KL T  M   A+P ++K    P 
Sbjct: 121 SVHLDVTDREVQILEERVDIVLRTRGDLAQEAGIVSKKLATSKMILVASPDFIKEYGMPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMED---FNW-LATVDRPI----GEPRISCLQVNSYLSIMQ 233
              +L K  + T  ++  K  +D   + W L   D  +      PR+ CL  N +L  ++
Sbjct: 181 HPSQLTK--MPTLTEMAGK--QDGTLYQWELLGPDGAVCSVPHHPRLVCL--NRWLQ-LK 233

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEAL 277
             V G G+ L+P+ +  D+    NL+ ++     PS+T      +A+
Sbjct: 234 SAVQGVGVGLIPEIVASDDLAKGNLLHVL-----PSWTTNVSIVQAV 275


>gi|325920459|ref|ZP_08182386.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325549039|gb|EGD19966.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 302

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 17/218 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F   ARS +FT AAE L +S+S++ + I+ LE  + ++LF+R  R + LT  G  
Sbjct: 8   NGLVTFVTAARSRTFTEAAESLGISRSAVGKAIARLEARLRVRLFHRTTRRIALTADGES 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +    ++ + +  L   S  P+G+LR+      G++++   L      +PD+   
Sbjct: 68  YFATCAAALEEIASAEAGLASQSSLPTGRLRVDMPSSFGRHVMLPILLRIGAAHPDLHYT 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  ++  ID + +  D  IR      S  L+ RKL    +   A+P YL     P +I E
Sbjct: 128 LSFNDHLIDPAQEGIDLTIRFGGVESSGGLVARKLGRQRLVLCASPAYLAAHGTPRTINE 187

Query: 186 LDKH-----------------NLITFGDLIPKCMEDFN 206
           L  H                 + +T GD +P+     N
Sbjct: 188 LQAHRSIVGFRNGQPVGWRFGDKVTAGDFVPQGTHQLN 225


>gi|251788572|ref|YP_003003293.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537193|gb|ACT05814.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 306

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 130/295 (44%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ + +F  V RSGSF  AA  L +  +++SR+I  LE ++  +L  R  R LTLT  
Sbjct: 2   LDFNDVALFVQVVRSGSFAEAARSLGMPPNTVSRRIQQLEEQLDTRLLQRSTRKLTLTSV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   +     L     EL   +++PSG +R+A   D         + +FL +YP  
Sbjct: 62  GQTFYDRCAGAVDGLTDAGQELLTGNLEPSGLIRVAAAADFFDFFSVEWVADFLAMYPRT 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPL 181
           +   +L +   D+  D  D AIR  + +  S  I R+L+        A+P Y+     P 
Sbjct: 122 RFDFVLSDARADLIGDRVDVAIRAGR-LDDSGYISRQLLRAGYDGLVASPAYIAKHGMPN 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++Q+L K + ++FG             + V+  I     S    N+  ++ +  + G GI
Sbjct: 181 TLQDLAKLDCVSFGHPSGFTTWRLAGASGVEEDI--QMSSRFSGNTIQALRKATLAGLGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ALLP  I   +     LV ++       + ++  YP        + AF  F+  K
Sbjct: 239 ALLPTVITTRDLHAGRLVPVLPQYKRQGYGLHVLYPSRRHLPLAVSAFIAFLVEK 293


>gi|170700785|ref|ZP_02891777.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134312|gb|EDT02648.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 301

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 97/194 (50%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDRLDGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +  GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALSELEAAEADLDCGRNEARGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDLVEEGIDLAVRIGTLADSTSLAVRRLGTQYGSLGAAPSYLARYGMP 180

Query: 181 LSIQELDKHNLITF 194
            S+ +L  H  I +
Sbjct: 181 QSLDDLRNHRTIAY 194


>gi|168819846|ref|ZP_02831846.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343352|gb|EDZ30116.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087553|emb|CBY97317.1| probable RuBisCO transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 301

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 138/292 (47%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+    F ++A  GS++ AA +  +S+S +SR++S LE ++G+ L  R  R L LT+ 
Sbjct: 2   IDWNDYWYFALIAEEGSYSRAAIRAQVSKSVLSRRMSALEEQLGVHLIQRTTRRLALTKV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +    + ++ E  +  +Q     P G LRI+  + + +  L   + EF+  +P  
Sbjct: 62  GEQFAQECQTLVNQSERARAVVQAVQEYPQGTLRISAPVFMAETWLGALINEFIARWPLA 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +QL+  N+ +D+  +  D A+ +    +  SSL  +K+ T++    A+P +++   +  
Sbjct: 122 NVQLLAVNRPVDMIAEGIDIALSVSSGALPDSSLHYKKINTLYDILVASPQWVEQHPDLK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L  H       L    M+ ++ L    + I       L  N+   ++Q    G+G+
Sbjct: 182 TIGDL--HRAPAMVRLADGRMQSWH-LINGSQEITLSLSPRLYSNNLRVLLQAVAGGNGV 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLP    K+   N  LV++  +       +Y  +P    N G     R F+
Sbjct: 239 ALLPFPACKEELQNGGLVQLFPEWSGQPRQIYALFP---ANKGMPAVARYFM 287


>gi|308049730|ref|YP_003913296.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307631920|gb|ADN76222.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 303

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 21/289 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V    SF+ AA +  L  S++SRQ++ LE+  G +L  R  R ++LT +G    
Sbjct: 7   IRTFVNVVAHQSFSAAAREQGLVTSAVSRQVAELESHYGCQLLTRSTRTMSLTAEGEYFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+  ++   +   K SG +RI + +   Q  LQ +L  F+  YP++ +  +
Sbjct: 67  AEFKAILARLDQLELGAGDRRNKVSGLIRITSPLHSAQLSLQPSLSRFMAKYPEVSLSWL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +++  +  D AIR+ + +  SSL+ R+  T+ +   A+P YL     P   + L 
Sbjct: 127 LANRSVNLLEEGVDLAIRVGE-LPDSSLVARRFTTVAVVFVASPDYLARHGTPDHPRALV 185

Query: 188 KHNLITFGDLIPKCMEDFN------WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +H          +C+ D +      W         + R+ + ++VN      Q+   G G
Sbjct: 186 QH----------RCLVDNSNPQLARWRYQEGGREHQIRVPATVEVNEGDLAGQFAADGHG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA LP ++V+       LV I++        V   YP    N+  ++A 
Sbjct: 236 IAQLPQFMVQQYLAEGRLVPILQAYALTPQPVSLVYPANRTNSVAVQAL 284


>gi|307245822|ref|ZP_07527908.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254795|ref|ZP_07536622.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259236|ref|ZP_07540966.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853524|gb|EFM85743.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862321|gb|EFM94288.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866903|gb|EFM98761.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 294

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 93/191 (48%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  +FT AA +L +SQS++SR I  LE+ +G++LF R  R L+LT  G
Sbjct: 6   NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L +   + + KL+     L      PSG++RI  +      +L   L +F   YP+IQ
Sbjct: 66  NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D    DI  +  D  +R    +    +  R      M    +P Y      P + 
Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPRTP 185

Query: 184 QELDKHNLITF 194
            +L  H  + +
Sbjct: 186 SDLAHHQCLNY 196


>gi|163851170|ref|YP_001639213.1| carbonate dehydratase [Methylobacterium extorquens PA1]
 gi|163662775|gb|ABY30142.1| Carbonate dehydratase [Methylobacterium extorquens PA1]
          Length = 310

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 12/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F   A +GSF+ A   L LS S IS +I  LE  +G  L  R  R + LTE G  
Sbjct: 5   ESVRIFMRAAETGSFSAAGRSLRLSPSVISYRIQTLEEHLGCLLLTRTTRRMNLTEAGRV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +E  +  ++     P G L++   + LG+ ++   +  F   +P+  + 
Sbjct: 65  FYDRCLDIAASVERAEKSVETQGAAPRGTLKVTAPLTLGRRVVAPLIPAFRERHPEADVH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+  +  D A+RL + ++ SS   RK+  I     A+P YL     P S  +
Sbjct: 125 LRLSDHLLDLVQEAVDVAVRLAQ-MRDSSFTLRKVADIERILCASPGYLAEHSAPESPAD 183

Query: 186 LDKHN--LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H   L+ F        E F W L   D  +  P    +  +    + ++ + G GI 
Sbjct: 184 LIDHACLLLRF-----PGSEQFRWSLRDGDEVVTLPVAGPIDADDGDVLTEWALQGQGIV 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L P + V     +  LV ++        T+   YP       + K F
Sbjct: 239 LKPVFEVAPYLADGRLVPVLPGTPPTPVTLGVVYPSRKMLPARAKTF 285


>gi|149920868|ref|ZP_01909330.1| transcriptional regulatory protein [Plesiocystis pacifica SIR-1]
 gi|149818267|gb|EDM77720.1| transcriptional regulatory protein [Plesiocystis pacifica SIR-1]
          Length = 290

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 13/248 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +F ++A +GSF  AA QL +++S++ R++  LE+E+G++L  R  R L LTE G  
Sbjct: 3   DDRAIFAILAEAGSFAGAARQLGVARSTVMRRLDALESELGLRLVQRAGRRLVLTEAGRG 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V  +LE  + EL+     PSGKLR+   I      L   +  F+  +P + + 
Sbjct: 63  YAEALRGVLRELERVENELRSEEATPSGKLRVWLPILGTSAALAPAVASFMDAHPAVVVH 122

Query: 126 LILDNKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           L L      + +   D A+    R+   + + +L++ +++ +   AY   H L     P 
Sbjct: 123 LELGRDVRHLELGAFDLALQFGFRINTELAARTLMRDRMILVASSAYVRAHGL-----PR 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S++ L  H  +   D+  K     +W       +  P  S ++VNS     Q    G+G+
Sbjct: 178 SVEALRHHRAVHARDVEGK---RIHWRDPSGARVPMPPAS-VEVNSVGFAFQLARAGAGV 233

Query: 242 ALLPDYIV 249
              P  + 
Sbjct: 234 VWAPSLLA 241


>gi|116251032|ref|YP_766870.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255680|emb|CAK06761.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 304

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 8/257 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF    + GS + A+ +L +S + + + ++ LE  +G +L  R  R  +LT+ G    
Sbjct: 7   MQVFVTTVQEGSMSAASVKLGISPAMVGQHVAALEERLGTRLLNRTTRRQSLTDFGMSYV 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++  T  + + S  KP G LRI      G  +L   L  +  L PD+ + + 
Sbjct: 67  EQCRDILERVAITDQDAEASQTKPRGLLRITAPTTFGAEVLMPALHRYRKLAPDVTLDIT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++++DI  +  D AIR+ + +  S LI R L    M   A+P YL+    P    EL 
Sbjct: 127 LTDRNVDIVEEGFDIAIRIGE-LPDSRLIARHLAPYRMMICASPDYLERHGNPGHPSELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I F    P     +      D     P+ + + VNS  ++      G G+ + P  
Sbjct: 186 GHETIGF---TPAARSPWKLSKGKDEVEVVPK-TAITVNSGQAVRMAARAGLGVIMQPSI 241

Query: 248 IVKDNPN---LVRIMED 261
           ++  +     LVR+  D
Sbjct: 242 LLTSDTQAGLLVRLFPD 258


>gi|325275279|ref|ZP_08141235.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099587|gb|EGB97477.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 302

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 135/287 (47%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V+   SFT AAE L L +S++S Q+  LE  +G +LF R  R +  T+ G+ L+
Sbjct: 7   LRTFVRVSEVNSFTLAAESLGLPRSTVSEQVRALERLLGTQLFNRTTRRVQATQDGALLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++   ++  +        + +G+LR+     + + ++   L  FL  +P +Q++L 
Sbjct: 67  TRSKDLLSGMDEIESLFSADDAELAGRLRVDLPTMMARRVIIPALPRFLQRFPRLQVELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   +    ++ R +  + M   A+P YL     P ++Q+L 
Sbjct: 127 CTDRQVDLLREGFDCVMRI-GALHDLDVVARPVGQLSMRNCASPAYLARHGVPRTLQDLA 185

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H L+ +  +L  +C   F ++        +P    + VN+  +    C+ G G+  +P 
Sbjct: 186 GHQLVHYVRNLGGRC-AGFEYVQGGQVQY-QPMAGAVTVNNAEAYSAACLAGLGLIQVPA 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V ++     LV ++     P+  V   Y        +++AF  ++
Sbjct: 244 VGVAEHLQRGELVALLPAWQAPAMPVSLLYARQRHVPRRVQAFMQWL 290


>gi|307546886|ref|YP_003899365.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218910|emb|CBV44180.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 305

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 128/288 (44%), Gaps = 12/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA  GS+T AAE L LS++ +SR +  LE  +  +L  R  R L LTE G +
Sbjct: 5   DAMTAFVRVAELGSYTRAAEALALSRTRVSRLVMELEEHLQARLLQRTTRRLHLTEVGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   LE  + E+        G LR+   +  G   L   +  F++ +P++Q++
Sbjct: 65  YLAHAQGILQALEDARAEVGADVHAMHGHLRLNGPMSFGIRHLSPLVASFMVQHPELQVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+++ +D+  +  D AIR+   +  S+L+ R+L    M   A+P YL     P   +E
Sbjct: 125 LDLNDRRVDLLEEGYDLAIRIGD-LPDSTLVARRLTHCRMVLCASPEYLATHGAPRRPEE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +  H  + +   +     D+  L      I  P    L+ N+   +      G GIA  P
Sbjct: 184 IAGHRCLRY---LGAYSGDWQ-LGGQQHDISGP----LESNNGDVLTPAAEAGLGIAHQP 235

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++V D+     LV I  D       V+  YP       K+  F +F+
Sbjct: 236 SFLVADSIRAGRLVPIGTDWPPQILGVHGIYPARRHLPTKVARFLDFL 283


>gi|116695836|ref|YP_841412.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530335|emb|CAJ96682.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 334

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 139/305 (45%), Gaps = 26/305 (8%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DK RV   F  V R+GSF  AA +  ++  + S+ +  LE  +G++L +R  R L+LTE+
Sbjct: 27  DKARVLTLFLGVVRAGSFHRAAVEAGVTPQAASKAVRTLEDHLGVRLLHRTTRKLSLTEE 86

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++L  + +    +L+    +++ S     G +R+     LG  +L   ++ F   YP I
Sbjct: 87  GARLFELAAPGMRQLDEALEQVRSSKSDNDGLIRLTAPPSLGSRVLVPLVRGFREQYPRI 146

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
              ++L +   D+     D   R+   P Q  +L+ R+L  + +   AAP YL    EP 
Sbjct: 147 TFDVVLSDLFTDLVEAKIDVGFRVGTSPGQ--NLVARRLCDLPLVICAAPDYLARHGEPA 204

Query: 182 SIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYC 235
           ++ +L +H    F     G ++P       W   VD  +    +  +   N   + ++  
Sbjct: 205 TLDDLLQHQCTGFRRPATGRMVP-------WELQVDGDLIYQEVPAVASFNDVETEVEAV 257

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
             G GI  LP Y++  + +LV      I P ++     +Y  YP   +   +++ F +F+
Sbjct: 258 RAGMGIGQLPAYMI--HADLVSGRLKAILPGYSSSNVGMYMYYPHRSQMPVRVRRFIDFV 315

Query: 291 FLKAR 295
               R
Sbjct: 316 VEAGR 320


>gi|326410358|gb|ADZ67422.1| transcriptional regulator [Brucella melitensis M28]
          Length = 305

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H
Sbjct: 7   MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 67  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     A P YLK    P +I++L 
Sbjct: 127 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVATPRYLKERGTPQTIEDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP G      LQ NS   + +  + G GIA    +
Sbjct: 186 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 239

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 240 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 286


>gi|190150237|ref|YP_001968762.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307263576|ref|ZP_07545191.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915368|gb|ACE61620.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871219|gb|EFN02948.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 294

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 93/191 (48%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  +FT AA +L +SQS++SR I  LE+ +G++LF R  R L+LT  G
Sbjct: 6   NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L +   + + KL+     L      PSG++RI  +      +L   L +F   YP+IQ
Sbjct: 66  NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D    DI  +  D  +R    +    +  R      M    +P Y      P + 
Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPRTP 185

Query: 184 QELDKHNLITF 194
            +L  H  + +
Sbjct: 186 SDLAHHQCLNY 196


>gi|307256964|ref|ZP_07538741.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864539|gb|EFM96445.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 294

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 93/191 (48%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  +FT AA +L +SQS++SR I  LE+ +G++LF R  R L+LT  G
Sbjct: 6   NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L +   + + KL+     L      PSG++RI  +      +L   L +F   YP+IQ
Sbjct: 66  NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D    DI  +  D  +R    +    +  R      M    +P Y      P + 
Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPKTP 185

Query: 184 QELDKHNLITF 194
            +L  H  + +
Sbjct: 186 SDLAHHQCLNY 196


>gi|270264868|ref|ZP_06193132.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041166|gb|EFA14266.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 302

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 131/285 (45%), Gaps = 10/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LHR 68
           VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT+ G + L R
Sbjct: 9   VFITIVDRGSMIAAAETLEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTDAGERTLER 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    E   +E  E S +  G LRI  +  LGQ  L G + ++L  +P + + L +
Sbjct: 69  CRQMLALAGEIDLVE-GEQSDELRGLLRITCSQSLGQTALVGAVAQYLKRHPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L +      A+P YL     P   Q+L  
Sbjct: 128 NNRAVNLVEERIDLALRITNELD-PNLIARPLSSCASVVCASPAYLAAHGTPRHPQDLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K +  F+    V   +       L  N  + +M   V G+GI++ P Y 
Sbjct: 187 HNCLTY-SYFGKSLWHFDSQG-VKSAVAVS--GNLSANESVVLMAGTVQGAGISMQPYYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  L+ +M D    S  +Y  Y    +    L+   +F+
Sbjct: 243 AAPLLASGELIELMPDYRPQSMGIYGIYTSRRQMPATLRTMLDFL 287


>gi|170742631|ref|YP_001771286.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196905|gb|ACA18852.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 304

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 130/286 (45%), Gaps = 12/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GSF  A   L LSQ+ +++ ++ LE  +G +L +R  R LTLTE G    
Sbjct: 8   MQVFVRVAGLGSFAAAGRSLGLSQTGVTKHVTALEERLGTRLLHRSTRRLTLTEAGRGYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +   +  +++P+G LR+   +  G   +   L  F   +P +Q+ L 
Sbjct: 68  EACERILAEITEAEAAARAEALEPTGTLRLNVPLSFGVREIAPALAAFTAAHPALQVDLG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A+R+   ++ S+L+ R L    +   AAP YL     P   ++L 
Sbjct: 128 LSDRAVDLIEEGWDMAVRIGH-LRDSALVSRFLAPCRLLLCAAPDYLAARGRPRRPEDLG 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN + +  L       F   A             L+ ++  +++   V G G+   P +
Sbjct: 187 RHNCLGY-TLASSGGWRFGGRAYAV-------TGNLRASNGDALVAAAVAGQGLIYQPSF 238

Query: 248 IVKDNPNLVRIME-DVITPS--FTVYFCYPEALKNTGKLKAFRNFI 290
           IV D     R++  D+  P     ++   P   +   K++A   F+
Sbjct: 239 IVGDALRAGRLVALDLGAPPSVLPIHALMPPGRRQPAKVRACVAFL 284


>gi|312881192|ref|ZP_07740990.1| transcriptional Regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309371084|gb|EFP98538.1| transcriptional Regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 289

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 15/261 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +  F  VA +  F+ AA +L ++ S ISR++S LE ++G+ L  R  R + LTE G 
Sbjct: 4   FDGIPEFLAVAETQGFSSAARRLGVATSQISRRVSDLEAKLGVALVARTTRKVKLTEAGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++ ++L+           K +G LR+    D  +  +   L EF+  + ++++
Sbjct: 64  TYYEYCHDIVNQLDQANEIATAGQGKLNGTLRVTAAGDFTETHIVPALIEFVAQHSELEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D + ID   +  D AIR    +  S+LI RKL      A A+P YL+    P + Q
Sbjct: 124 EINHDTRMIDFVEENYDFAIRF-GTLPDSNLIARKLSDHPYAAAASPEYLEKFGIPQTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL KH  IT           +N W     +  I       ++ NS  +++  C  G GI 
Sbjct: 183 ELTKHQCIT---------TTYNRWTFQHNNEDINVSVKGKVKANSIKTLISACKSGLGIL 233

Query: 243 LLPDYIVKDN---PNLVRIME 260
            LP   + +N     LV I+E
Sbjct: 234 YLPQSTLAENFEAGQLVPILE 254


>gi|149188029|ref|ZP_01866324.1| Hypothetical transcription regulator [Vibrio shilonii AK1]
 gi|148838017|gb|EDL54959.1| Hypothetical transcription regulator [Vibrio shilonii AK1]
          Length = 304

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 142/299 (47%), Gaps = 12/299 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DK+  F  V R+GSF+ AA+Q  +S S+ SR I+ LE  VGI L  R  R +  T+ G +
Sbjct: 5   DKIVYFLHVVRTGSFSLAAKQYGISASAGSRWIAELEESVGISLLKRSTRKVVPTQAGLR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   S+V  ++E    E+Q  S    G +RIA+T    ++ L   + E+L  +P +  +
Sbjct: 65  LYERFSQVNTEIEDIFTEIQNLSNDDRGVIRIASTPLFARDYLGKIVGEYLRYHPHVTFR 124

Query: 126 LILDNKDID--ISMDYADCAIRLRKPIQS--SSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++    D+D    +D+A  A  +    Q   S L++R L+   +    +P Y++   EP+
Sbjct: 125 VMETAFDMDHVNEVDFAVRASAIYDGFQEKDSLLVKRSLLKHPLIVCCSPAYIEKYGEPM 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           + ++L++HN +    L+        W+   D  +    I+  ++V     I    + G G
Sbjct: 185 TPEDLNRHNCLYASTLVGGN----KWVFERDGEMTAVDIAQTVEVEDSQFIKTVAINGGG 240

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  LP  ++++      LV I+++     F     Y    +   +   F+ ++  + R+
Sbjct: 241 IGYLPLSLIEEELEQGVLVPILKEYTNSDFEFSLYYRPRRQMPVRCVNFKEYLIRRVRE 299


>gi|187479723|ref|YP_787748.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115424310|emb|CAJ50863.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 312

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 127/289 (43%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VA   SF+ AAE L L+ ++++  +  LE  +G+ L +R  R L LTEQG K  
Sbjct: 7   MTVFVRVAECSSFSRAAESLDLANATVTACVRNLELSLGVTLIHRDTRRLHLTEQGEKYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   ++  +IE++    +  G L + T I  G   L   L  F L +P I   + 
Sbjct: 67  ERAREILRAVDDAEIEVRSQLGELRGPLVVETPISFGHAFLCPALHGFALRHPGISTMVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-PLSIQEL 186
           L N+  ++     D AIR+ + ++ + LI R +        A P       E P  +   
Sbjct: 127 LTNQPHNLIEKAIDVAIRMDR-VEDAGLIARPIYEARYVVCATPEVAAGLPEHPADLNPQ 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           D       G L  +      WL T +      +PR   L  NS  +++   + G+G+  +
Sbjct: 186 D-----CLGVLAEERRTSNPWLLTREEETVAVQPR-GTLHFNSNDAVVNAALHGAGVIHV 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D  V    +   LV +  + IT   T Y     A  ++ K++AF +F+
Sbjct: 240 LDIFVLRAIEQGTLVPVYTNWITQCRTFYSVTTRARNDSAKVRAFTDFL 288


>gi|327191153|gb|EGE58197.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 298

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 133/298 (44%), Gaps = 33/298 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  +GS + A   L  S + +S++I  LE  +G +L  R  R ++LTE G   +
Sbjct: 7   LEIFAKVVSTGSMSLAGRMLGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +  +   S +  G L+++     G+  +  +LK F+  +PD+ I L+
Sbjct: 67  DRVLGILAGLEEAEFYISGRSAQMHGTLKVSAPTSFGRMHIAPHLKAFMQAHPDLAINLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  DI     D AIR+ + +  SSL+ R+L  +     A+P YL    EP +I +L 
Sbjct: 127 LTDEFSDIIGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLAAHGEPRNIDDLK 185

Query: 188 KHNLITFGDLIPKCMEDFN---WLATVD------RPIGEPRISCLQVNSYLSIMQYCVLG 238
            H          +C+   N   W  T        RP G      L  NS   I +  + G
Sbjct: 186 HH----------RCLPAHNGDTWRLTGPEGALSLRPEG-----MLITNSSEVIREAVISG 230

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
            GIAL   + + +     R+++  + P++      T+   YP       K++ F +++
Sbjct: 231 LGIALRSTWDIGEELKAGRLVQ--VLPAYEGSHNVTLSAVYPSRQFLPAKVRLFIDYL 286


>gi|186474178|ref|YP_001861520.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196510|gb|ACC74474.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 304

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 131/296 (44%), Gaps = 12/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  +GS + AA ++ L  S +S++++ LE  VG++L  R  R  TLTE+G+  H
Sbjct: 12  LLAFSRVVSAGSLSAAAREMDLPLSVVSKRLAHLEKSVGVRLIQRTTRRQTLTEEGALFH 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  +  L +   + SG LR+     LG+  +   + +F  L+P + +QL 
Sbjct: 72  ARVVRILDEIEQAEELLSQRRQEVSGLLRVTAPGQLGRQKIAPLIADFQRLHPQLTVQLD 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+     D AIR    +  SSLI R L        A+P YLK    P    +L 
Sbjct: 132 LTDAVVDLVEGGLDLAIRF-GSLADSSLIARALAPNFRVLCASPAYLKQHGTPKHPHDLT 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I  GD          W    D  +     + +  N   +   + +  +GIA+   +
Sbjct: 191 THRCILIGD-----QRRGEWRFEGDESVAVRVDAAIVTNDGEAAHLFALADAGIAVKSIW 245

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
            V D+     L R++      +  ++  YP +     +++ F +++    L+A  W
Sbjct: 246 DVGDDILAGKLRRVLPQHSMSAAPLHAIYPHSQHLAPRVRVFVDYLRERLLQAWRW 301


>gi|78063840|ref|YP_373748.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971725|gb|ABB13104.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 331

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 130/289 (44%), Gaps = 9/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L V   +A SGSF  AA +L  +Q ++SR I  LE  +  KL +R +R + +T+ G  L 
Sbjct: 12  LLVLAAIAESGSFGRAASRLGKTQPAVSRAIQRLEDRLRAKLVHRTSRHVEVTDAGHALL 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E         +   +G LR+A      + +L   L +F+  +P + ++L 
Sbjct: 72  SKVLPLLQGIEEATAGASHQTSIVNGTLRVACDAVFARLVLAPELAQFMKDHPALHVKLE 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
             N   D+  D  D AIR   P   S+LI R+L +  +   A+P YL+    P S Q+L 
Sbjct: 132 TRNDLPDLISDGFDLAIRFGPPT-VSTLICRRLYSPRVLTVASPSYLEQRGRPRSPQDLV 190

Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
            D H  I   D  P     F+W    D    +  ++  L V    + +  C+ G GIA +
Sbjct: 191 DDGHECILAID--PATGRPFDWEFWRDSEKVKVAVNGKLMVTDAGTKIGACLAGYGIAQI 248

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D  +  +     L  ++ D    +F +Y  YP       K++AF +F+
Sbjct: 249 IDLGIDTHLRAGTLEPVLTDWCDETFPLYVYYPSRNHVPAKVRAFIDFV 297


>gi|37526532|ref|NP_929876.1| hypothetical protein plu2641 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785963|emb|CAE15015.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 295

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 130/288 (45%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   A + SFT A +QL +S S++S+ I  LE  +GI+LF+R  R +TLT +G+   
Sbjct: 7   LNVFVRAADARSFTVAGQQLGISSSAVSKAIVRLEERLGIRLFHRSTRTVTLTLEGTLFF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  + EL +    PSGKL+I+    +G  L       F  LYP+I++ + 
Sbjct: 67  ERCKRILDEVEAAETELSQMQKMPSGKLKISLP-SVGM-LFMPKFAAFTRLYPEIKLDIS 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  +R   P + S L+ R L +       +P Y      P   ++L 
Sbjct: 125 CSDRIVDVIEEGFDAVLRTGDP-RDSRLMSRMLGSYRQVIVGSPAYFAAAGFPEEPEDLV 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GSGIALLP 245
            H  + +    P   +   W    D    E  + C  V   L   Q C    G GIA +P
Sbjct: 184 SHPCLLY--RFPTNGKLNVWPLNRDGKKIELNLPCNMVTDSLE-PQVCFAEHGLGIACVP 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  V       +LV I++     S      +P +   + K++ F +F+
Sbjct: 241 NIAVYRQLKEGSLVTILDKYNESSTIFRILWPSSRHLSPKVRVFVDFM 288


>gi|329916431|ref|ZP_08276380.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327544724|gb|EGF30148.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 308

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 131/280 (46%), Gaps = 16/280 (5%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS + AA +   +QS++S+ I+ LE  +G++L  R    L  T QG   +     V  + 
Sbjct: 17  GSMSAAARERGTTQSTVSKAITALEKRLGVRLLARSTTVLVPTTQGQLFYERAKRVLEEF 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           +  + E +  + +P+GKLR+     LGQ  +   ++ FL  YP+++++L L+++ +D+  
Sbjct: 77  DEAEAEARGMTERPAGKLRLNVPSALGQFYVADLVRTFLRTYPEVEVELTLNDRMVDLLE 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN----CREPLSIQELDKHNLIT 193
           +  D A+RL   +   + + R + T   +  AAP YL+       E L+ Q+  +   + 
Sbjct: 137 EGVDVALRLGGKLPPDA-VARYVGTSVRYLVAAPAYLQGRAIVTPEDLATQDYIRFAWLD 195

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD-- 251
            GD++ +       L    R       +   VN+ L I    + G G+ L P ++  D  
Sbjct: 196 GGDMV-ELSNGVQKLTVATR-------ARFAVNNALLIRDALLAGDGVGLCPSWLASDSL 247

Query: 252 -NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  LVR++ +   PS  +    P       + + F +F+
Sbjct: 248 ASGKLVRVLPEWSGPSQQLTLLTPSRRYQPLRARLFIDFM 287


>gi|170694876|ref|ZP_02886026.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140236|gb|EDT08414.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 324

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 100/185 (54%), Gaps = 1/185 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  V    SF+ AA+ L L +S++S  +  LE  + ++L  R  R L+LT +G+
Sbjct: 4   FQSMQVFARVVELNSFSRAADALRLPRSTVSVVVRKLEAHLRVRLMQRTTRHLSLTPEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +R    +  ++  ++  L  +   P G+L +     LG+ ++   + +F   +PD+++
Sbjct: 64  EYYRHCIRILAEIRESEEMLASARNGPRGRLSVQIATALGRIVVLPAIDDFHKRFPDLEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + LD++ I  S +  DC IR+ +P +   +IQR+L  + +    +P YL    EP  ++
Sbjct: 124 MIGLDDRPIHPSDENLDCTIRMGEP-EDPGVIQRRLCDLEIVTAGSPDYLVRYGEPQRVE 182

Query: 185 ELDKH 189
           ++ +H
Sbjct: 183 DIPQH 187


>gi|153009501|ref|YP_001370716.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561389|gb|ABS14887.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 304

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 130/297 (43%), Gaps = 24/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SF+ AAE+L L+Q ++SRQI+ LE ++G  LF R +R + L++ G    
Sbjct: 15  LAAFDAVARHESFSAAAEELSLTQGAVSRQIATLEEQLGTALFDRTSRNVVLSDAGRVYL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +        +      LQ  S      L +A     G   L   +  F+  YPDI +   
Sbjct: 75  KAVGPALASIRAA--SLQVMSHMRGTTLNLAFLPTFGTRWLIPRIPRFVAKYPDIILNFA 132

Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKN--CREPL 181
                 D   +  D AI + +P      S  L+   +  +      +P +L+      P 
Sbjct: 133 TRIGQFDFDREGLDAAIHIGQPDWPNADSVFLMDETVAPV-----CSPAFLQQNPVHVPA 187

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +  L   N+ +     P   +  +W  ++D  I  P    ++   + ++ Q C+ G G+
Sbjct: 188 DLLPLPLFNMAS----RPGAWD--HWFKSLD--IAAPVSPGMRFEQFSNVSQACIAGLGV 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           AL+P ++++   D+  LV      +    + YF  P+A  +T  + AFR+++  + +
Sbjct: 240 ALMPLFLIRAEIDSGQLVVACPHTVKSPSSYYFVTPKARSSTPAVSAFRDWLLAEVK 296


>gi|167644458|ref|YP_001682121.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167346888|gb|ABZ69623.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 311

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 4/204 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L +F  +  +G FT A   L +S S++S +I  +E  +G++L  R  R +  TE G 
Sbjct: 6   WNDLAIFAAIVEAGGFTRAGLGLGVSASALSHRIRAMEARMGVRLLNRTTRSVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L         ++E   I L     +P+G++R+        +++   L      YP++ +
Sbjct: 66  RLLASLRPAMAEVEAALITLDADRARPTGRVRVTAHRSAAFDIVLPRLGGLADAYPEVTV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSI 183
           +L++D+  +DI     D  IR R P     ++  +L   + +   A+P YL++   P + 
Sbjct: 126 ELVVDDGLVDIVRRGFDAGIR-RLPSLEQDMVSVRLDDGVPLAIVASPEYLRSFGVPDTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW 207
           Q+L +H  + +   +P     + W
Sbjct: 185 QDLQRHRCLNY--RLPTAGSLYRW 206


>gi|323175477|gb|EFZ61072.1| hypothetical protein ECOK1180_5761 [Escherichia coli 1180]
          Length = 298

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 134/292 (45%), Gaps = 24/292 (8%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LTE GS L+  
Sbjct: 6   TFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLTEAGSNLYER 65

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
               + +++    E+ +  + P+G L+I       +  L   L  F   YPDI+++L  D
Sbjct: 66  LRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYPDIKVELTTD 125

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYLKNCREPLSI 183
           +  +DI     D  +RL      S ++++ ++++ +         A P Y     +P   
Sbjct: 126 DSLVDIVQQGFDAGVRL------SGIVEKDMISVAIGPPVKLCVAATPEYFARYGKPRHP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + F    P   + F+W    +  I       + ++   + ++  ++G+GI  
Sbjct: 180 HDLLNHQCVVF--RYPSG-KPFHWQFAKELEIAVA--GNIILDDVDAELEAVLMGAGIGY 234

Query: 244 LPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFI 290
           L    +K   D   L  ++ D  T  P F +Y  YP     +  L+AF +++
Sbjct: 235 LLYEQIKEYLDTGRLECVLGDWSTERPGFQIY--YPNRQYMSCGLRAFLDYV 284


>gi|254477949|ref|ZP_05091334.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214028534|gb|EEB69370.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 281

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 27/247 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            R F   AR+ SFT AAE++ L+QS++S+Q+  LE  +G+ LF R  RGL LT+ G KL 
Sbjct: 11  FRSFEAAARTLSFTAAAEEIGLTQSAVSQQVKSLEMRLGVDLFVRRTRGLALTDAGRKL- 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               EV   LE          +  +G  L +AT++ + Q ++  NL  F    P+I++++
Sbjct: 70  --LPEVGSALEMLSGAAARFDIGAAGDLLTVATSVSIAQWVIAPNLAAFKTQNPEIRLRI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY---LKNCREPLSI 183
           +      D     AD  IR     Q  +  QR L+  H+ A  +P+      +C  PL  
Sbjct: 128 LSAIWPDDFHASRADVQIRFGSEKQVGAGSQR-LLPDHLIAVKSPNLETDFGSC--PLIE 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
                +   T+G+               + P+ EP +     ++Y   +Q  V G+G+AL
Sbjct: 185 TVGTSNGWATWGE--------------ANGPVQEPTVFA---DTYGMALQLAVHGNGVAL 227

Query: 244 LPDYIVK 250
           + + + K
Sbjct: 228 VSELVAK 234


>gi|152969742|ref|YP_001334851.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954591|gb|ABR76621.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 260

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 115/233 (49%), Gaps = 12/233 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD  R+F  +AR+G+ + AA+++++  +++SR++  LE  + + LF RH  G  LT+ 
Sbjct: 5   FHWDDARIFLAIARAGTLSGAADKMNMGIATVSRRLDRLEQALNVPLFSRHQSGYRLTDD 64

Query: 63  GSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G   L R  +  Y  L   +    +  V  +G +R+AT+ +L  + +  +LK  L  YP+
Sbjct: 65  GEALLARAEALEYAGLAFGEAAQLQGHV--AGVVRLATSDNLATHFILPSLKGLLDHYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++++   + +++    AD AIR+ KP ++  L  ++L T+    Y A   L    + L
Sbjct: 123 LRVEVLSGVQPVNLHRRDADLAIRMVKP-EAGHLTLKRLGTVGFGVYGAADCLAGA-DGL 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
           S+ E D    + +  L   C       A    P    R+    + S+    QY
Sbjct: 181 SLSEAD---FVGWRKLTSTCRPPNGSRA----PCAAGRVKSKPIRSWPRFPQY 226


>gi|238787282|ref|ZP_04631081.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           frederiksenii ATCC 33641]
 gi|238724544|gb|EEQ16185.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           frederiksenii ATCC 33641]
          Length = 298

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 130/286 (45%), Gaps = 12/286 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68
           VF  +   GS   AA+ L +S++ ++R ++ +E   G +L +R  R L+LT  G + L R
Sbjct: 9   VFVAIVERGSMIAAADALEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTHAGEATLER 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +E QE   +  G LRI+ +  LGQ+ L   +  +L  YP + + L +
Sbjct: 69  CRRMLEFAQDMDLVEGQEDG-ELRGLLRISCSQSLGQSALAIAVAGYLHRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L T H    AAP YL     P    +L  
Sbjct: 128 NNRTVNLVEERIDLALRITNDLD-PNLIARPLATCHSVVCAAPSYLSAKGTPKDPHDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           HN +T+     K +  F+         +G      L  N  + ++   + G+GI L P Y
Sbjct: 187 HNCLTY-SYFGKSLWHFDQQGVKSSVAVG----GNLSANESVVLLSGALEGAGITLQPSY 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                  +  LV+++ D    S  +Y  Y    +    L+   +++
Sbjct: 242 SAAPYIASGQLVKLLPDYQPQSMGIYGIYTSRRQMPATLRTMLDYL 287


>gi|206563628|ref|YP_002234391.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039668|emb|CAR55637.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 290

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 131/291 (45%), Gaps = 23/291 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR  SFT AAEQL ++Q ++SRQI  LE   G  LF RHA+GLTLT +G +L 
Sbjct: 10  LQIFSTVARHRSFTRAAEQLCITQGAVSRQIQTLEAHYGFPLFRRHAKGLTLTAEGEQLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V  E + ++E   ++L       +  L++ T +      +   +  F   +PD+ +Q+ 
Sbjct: 70  PVVDESFARIEDISMKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D S +  D AI +        ++   L    +    AP  L+      ++ +L
Sbjct: 125 TTWQHVVDFSSEPFDAAI-VYGTSPGPGVVALPLFDERLTPVCAPE-LRQASPLGAVGDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYCVLGS 239
             H L+          +  +W A +D        P   P    L + +  ++  + V   
Sbjct: 183 AHHTLLH------PTRDHRDWRAWLDHAGERGVDPARGPTFDTLDLATNAAMQGFGVAIG 236

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + L+ D +      L R  + V+      +F YPE L +  K++AF ++I
Sbjct: 237 DVTLVDDDVSAR--RLERPFDIVLETGARYFFVYPENLGSQQKIRAFSDWI 285


>gi|241518559|ref|YP_002979187.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862972|gb|ACS60636.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 315

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 139/301 (46%), Gaps = 22/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DWD +R F  VAR GS   AA QL ++ ++I R+I+ LET +  +LF +   G  LT
Sbjct: 1   MTIDWDDVRYFLAVARHGSVRAAAAQLDVNHTTILRRIAQLETRLHSQLFEKLPAGYRLT 60

Query: 61  EQGSKLHRVTS--EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           E G ++  +    E    L  +++  ++ +V+  G LR+     L  +LL  +  +F   
Sbjct: 61  EAGEQVQELAEQMEASSNLLVSRVSGRDQAVR--GPLRVTMAPTLATHLLMPDFADFGRQ 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P+I++++    ++ +++   AD A+R+        +  R  +  ++H    P       
Sbjct: 119 HPEIEMEIHSSLENANLTNREADVALRV--------VFNRNSLPQNLHGVKGPDLSVGVY 170

Query: 179 EPLSIQELDKHNLITFGDL--IPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQY 234
             +S   L      T GD+  I K +E     A  D     G P    L+  ++L  M+ 
Sbjct: 171 --MSRDLLAAWKAGTSGDIRWISKNIEGVPEWAHGDVIEVTGAP-FRVLEDAAHLEAMR- 226

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LG GI+ LP ++    P  VR+    + P  T++       + T +++ F  FI  + 
Sbjct: 227 --LGLGISALPSFVGDAEPLFVRVPGTRLGPHGTLWVLTQGEARKTKRVRLFTEFISERL 284

Query: 295 R 295
           R
Sbjct: 285 R 285


>gi|83716781|ref|YP_439353.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167615896|ref|ZP_02384531.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142473|ref|ZP_05590735.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650606|gb|ABC34670.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 300

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 135/290 (46%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+ G 
Sbjct: 4   FQEMQVFVRIAERQSFSRASDDLQIPRATVTNLMKRMEARLGTRLLERTTRTVRLTQDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   LE  +   ++++  P G LR+     L +  +   L +FL  YP I++
Sbjct: 64  AYYRRCVRLIADLEEAEGAFRDAA--PKGLLRVNLQGTLARYYVVPALPDFLARYPGIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP  + 
Sbjct: 122 HIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPADLA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  + +  +     +      TVD  + E R+ + + V          V G GI  
Sbjct: 181 ALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQ 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y + D   +  L  ++     P   V   YP++ + + +++ F  ++
Sbjct: 239 VPRYRIADELAHGCLKIVLAAYPPPPMPVSVLYPQSRQLSSRVRVFARWL 288


>gi|118764440|emb|CAL80819.1| LysR-type regulator [[Polyangium] brachysporum]
          Length = 337

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 127/289 (43%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   G+ T AAE L LS +++SR ++GLE ++G++L  R  R + LT  G    
Sbjct: 7   MHVFTKVVDLGALTKAAESLGLSSAAVSRTVAGLEAQLGVRLLQRTTRSVALTPAGGVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++     +     +P GKLR+        + L   L  F+  YPD+ I ++
Sbjct: 67  ERARRILREVDAADATVAALVAEPKGKLRVLAPSSFVVHQLARQLPVFVARYPDVSIDVV 126

Query: 128 LDNKDIDISMDYADCAIRLR---KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             + D++    Y D +I++      I    ++ R L  +H    AAP YL+ C       
Sbjct: 127 AGDCDLEADSAY-DVSIQVAGVGGSILRDDVVARPLAQVHCLPCAAPGYLERCGPVEHPT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L + + + F       +  F   A V     EPR + L+ +   S+    +   GIA L
Sbjct: 186 DLLQRDCLVFATSGMPPVWRFEGAADVVEI--EPR-AALRSDHGESLYAAALAELGIATL 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V D     +LVR++        T+Y   P         +AF  F+
Sbjct: 243 PTFMVHDALQRNSLVRVLPQWRIAPQTIYAVLPTYRYIPASTRAFVQFL 291


>gi|330892117|gb|EGH24778.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 306

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 130/287 (45%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F+++A+ GS    A +L ++  +IS+++S LE  +G +L  R  R ++LT +G    
Sbjct: 7   LSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEARLGTRLVNRTTRSMSLTAEGELYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +++  +  +  SS  P G +R+  ++  G+  +   L  F   YP++QIQL 
Sbjct: 67  SHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQLE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D++    D  IR    +  ++   RK+ +      A+P YL+    P  + EL 
Sbjct: 127 ISDHPLDLATHGFDLGIRF-GSLPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAELQ 185

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN I    +  P  +  F+             + C   N     + + + G GI L  +
Sbjct: 186 HHNCIFLRQNETPYGVWSFSNGGRTQNVKVHGALGC---NDGEVALNWALEGFGILLRAE 242

Query: 247 YIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +  +    R   ++ED       VY  YP+ L  + +++   +F+
Sbjct: 243 WDIARSVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRCLIDFL 289


>gi|312960758|ref|ZP_07775263.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311284416|gb|EFQ62992.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 319

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 132/292 (45%), Gaps = 13/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V  R  +FT AA++LH++QS++S Q+  LE   G++LF R  R L LT  G+ L 
Sbjct: 28  LRAFEVATRHPTFTAAAQELHVTQSAVSHQLRHLEALWGLQLFER-GRALRLTAAGATLA 86

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  E +  LE T  +L+E   K   +L ++TT       L   L      +P++ + L 
Sbjct: 87  PIVREFFMSLEATLGDLREQ--KGRVRLSVSTTYSFALKWLLPRLPSLSRQHPELLVSLD 144

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  I  S   AD AIRL K      L    L    +   A+P  L+    P S  EL 
Sbjct: 145 TTDAVIHFSDAQADVAIRLGKG-NYPGLYSEFLFGEQVFPVASPELLQRVGTPGSPTELL 203

Query: 188 KHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +  L+     +L PK    F  +     P+ E     ++       ++  +LG G+AL+ 
Sbjct: 204 RLPLLIRDGAELAPKWEVWFEAVGLAFSPLRE----SVRFGDTNMTVEAALLGQGVALVR 259

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              V++   +  LVR+ +         YF  P+ +++   +  FR ++  +A
Sbjct: 260 SGHVENEISDGRLVRLFDVQFQSPLAYYFVCPKGIESQPHIARFRRWLVGEA 311


>gi|188592136|ref|YP_001796734.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|170938510|emb|CAP63497.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 295

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 120/274 (43%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR GSFT AA  L ++QS++S+ + GLE  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLAFVTVAREGSFTRAAASLGVTQSALSQAVRGLEERLRIRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +     + ++E     L     KP+G +RI    ++   +L   L   L  YPDI+
Sbjct: 65  ERLMQAIGHRFDEIEAELDALTALRDKPAGTVRITCGDNVLHTILLPRLTPLLQEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  ++    DI  D  D  +RL   I    +       + M   A+P Y      P + 
Sbjct: 125 LEFDVNYGFRDIVADRFDAGVRLGNTIDKDMIAVPIGPPLRMAVVASPAYFAAHPPPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I     +P     + W      R +       L  N+    +   + G GI 
Sbjct: 185 KDLMAHRCIN--QRMPTSGGLYVWDFERRGRQVNVRVDGPLIFNTTQPQVDAALAGLGIT 242

Query: 243 LLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCY 273
           LLP D ++   +   LVR++ED   P F  Y  Y
Sbjct: 243 LLPEDELMPHIEAGRLVRVLED-WCPKFNGYHLY 275


>gi|89902383|ref|YP_524854.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347120|gb|ABD71323.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 291

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 14/289 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-KLHR 68
           VF  V  +GSF+ AA QL L+ S++SRQ++ LE  + ++L  R  R L LTE GS    R
Sbjct: 3   VFARVVDAGSFSGAARQLGLTPSAVSRQVARLEGVLRVRLLERTTRKLRLTEAGSAAFTR 62

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             + V    E   +   +S+  P G +R++     G+ ++   +  FL  YP++ +QLI+
Sbjct: 63  CQALVAAAREVMALSDSQSAT-PRGLVRVSMPKAFGRQVVHPLMPAFLARYPEVDVQLII 121

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  +  D AIR+   +    L  R L +I     A+  YL     P   ++L +
Sbjct: 122 TDRTVDLFEESIDLAIRITD-VPPPGLAGRPLTSIRHLVCASSQYLAAHGTPAHPRDLVQ 180

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDY 247
           H+ +  G+       D +W           R+S   V ++  + +       GIA LP++
Sbjct: 181 HSCLYLGE----DERDRHWRFQRGAEEATVRVSGRYVANHSEVRLDGARQHLGIASLPEF 236

Query: 248 IVKD---NPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++     +LV +++D       + T +  YP       KL+ + +F+
Sbjct: 237 TAREALAKADLVTVLDDWEHKTDYAGTAWLLYPPNRFLAVKLRVWIDFL 285


>gi|78065829|ref|YP_368598.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966574|gb|ABB07954.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 324

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 133/302 (44%), Gaps = 17/302 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L VF   A   SF  A+ +L ++ S+IS  I  LE  +G++LF R  R ++LT+ G
Sbjct: 11  DLFSLNVFLAAATHLSFRAASIELDVTPSAISHSIKSLEQRLGVRLFNRTTRSVSLTDAG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          +    + +      PSG +RI  +    + +L+  L  FL  YP + 
Sbjct: 71  ERLVDKLRPAISSVAEAMLAVDGMRDTPSGTVRINASEGAIRLVLKPVLARFLRDYPQVH 130

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++ D +  DI     D  IRL + +    +  R    +   A A+P Y      P   
Sbjct: 131 LDIVTDGRLGDIVAGGFDAGIRLAEAVPQDMIAVRVSDPVRFAAVASPAYFAAHGRPDVP 190

Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           Q+L++H  I F    G +     E    + TV+  +  P    L +     ++   + G 
Sbjct: 191 QDLERHACIRFRFDSGAIYRWEFERRGVVETVN--VSGP----LTLTDQPLMVDAAIDGI 244

Query: 240 GIALLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIA +PD++V D   +  L R++ D   + P   +Y  YP     +G L+A  + + + +
Sbjct: 245 GIAFVPDHLVHDALADGRLERVLADWCPVMPGLCLY--YPGHRHVSGGLRALIDRVRIPS 302

Query: 295 RD 296
            D
Sbjct: 303 PD 304


>gi|54303261|ref|YP_133254.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46916691|emb|CAG23454.1| hypothetical transcription regulator LysR family [Photobacterium
           profundum SS9]
          Length = 314

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 14/176 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR GSFT AAE LH++  +IS+QIS LE E+   LF RH+RG+ LT++G++L+
Sbjct: 5   LATFETAARFGSFTQAAEHLHITTGAISQQISHLEQELSFVLFERHSRGIHLTDEGNQLY 64

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL- 126
           RV ++    +     ++Q++     G++ +  T       L   L +F   YPDI+I   
Sbjct: 65  RVVNQSLADIRDVINQIQKAH-HADGEIHLKLTPSFAFKWLVPRLHDFYTQYPDIKIHTF 123

Query: 127 ----ILDNKD--IDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
               ++D+ D   D+++DY     I+ R   Q S L+  KL+ +      +P Y+K
Sbjct: 124 AEGALVDHNDTNFDLAIDYGQTPYIQTRNKSQISLLMAEKLLPV-----MSPDYMK 174


>gi|209551865|ref|YP_002283782.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537621|gb|ACI57556.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 298

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 134/311 (43%), Gaps = 30/311 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + +F  A E+L +++S++S+ +  LE  +G+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119
           E G            ++      ++E   +PSG LRI T   + ++ L G  L  F+   
Sbjct: 61  EAGEVFFEAVGPSVRRVRDAMQTVREMQARPSGLLRI-TVSSIAESFLSGTLLAGFMQAC 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM------HAYAAPHY 173
           P+I++ + + + + DI     D  +RL        +I++ +V I +      +A A+P Y
Sbjct: 120 PEIKLDITITDDEFDIVEAGFDAGVRL------GEVIEQDMVAISVSERQRQYAVASPAY 173

Query: 174 LKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYL 229
           L+    P    EL  H  I +    D  P     + W  T  DR         +  N   
Sbjct: 174 LERRGRPRHPGELQGHACIGWRPRPDTAP-----YRWEFTENDRDFDVSVDPAVTTNDMG 228

Query: 230 SIMQYCVLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            +++    G+GI          Y+  +   LV ++ED   P    Y  YP   +   KL+
Sbjct: 229 MMIRMACAGAGITFGMVETFQSYV--ERGELVPLLEDFCPPFPGFYLYYPRRQRQPLKLR 286

Query: 285 AFRNFIFLKAR 295
           A  + I   AR
Sbjct: 287 ALVDHIRTSAR 297


>gi|168820867|ref|ZP_02832867.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205342398|gb|EDZ29162.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 307

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 69  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 189 NHRCLCHRFTRESGLYRWEFVRGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 247

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 248 DVHEDLQDGQLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297


>gi|17545871|ref|NP_519273.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428166|emb|CAD14854.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 297

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 137/284 (48%), Gaps = 24/284 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  +  +     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGTAFLAHARGILAAVDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ ID+  +  D AIR+   ++ S+L  R+L T  +   A+P YLK    P
Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRI-GALRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-----RIS-CLQVNSYLSIMQY 234
            ++  L  H L+ F  + P+ +   +W      P+  P     RI+  L+ +S  ++ Q 
Sbjct: 180 RTVDALRHHALLGF--VQPESLN--HW------PLRGPHGDRLRITPTLKASSGETLRQL 229

Query: 235 CVLGSGIALLPDYIV---KDNPNLVRIMEDVIT----PSFTVYF 271
            + G+GI  L D++    +   +LV+++ +       P   VY+
Sbjct: 230 ALQGAGIVCLADFMTARDRRAGDLVQVLPEATVEIQQPIHAVYY 273


>gi|213969852|ref|ZP_03397986.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|213925400|gb|EEB58961.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 302

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 137/293 (46%), Gaps = 22/293 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +FDW+ LR F   A   S + AA++  +  +++SR+I+ LE  + +KL  R  R   LT+
Sbjct: 23  TFDWEDLRYFLTFAAVKSLSGAAKKSGVEHATVSRRIASLEKSLNVKLVDRRKRLYELTD 82

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G KL  +   +  + E        +   P+ ++ I+    +    L   L  F  ++P 
Sbjct: 83  DGRKLAVIGRRIEEQAEAIGRLAVAAQDAPATEVTISAPSSVAIEKLVPQLGAFRAMHPG 142

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+ D++   +S   +D  IR  +P++ + ++ R++ T     Y +  YL+      
Sbjct: 143 IVLRLLGDHQYSSLSSCQSDLCIRFSRPVE-NGIVARRIGTASFSFYCSSFYLE------ 195

Query: 182 SIQELDKH-NLITFGDLIPKCMEDFNWLATVD-RP-IGEPRISCLQVNSYLSIMQYCVLG 238
             Q L  H   I +   +    ++    A V  RP + E +   LQ+ +  +       G
Sbjct: 196 --QRLAVHYEFIGYDSEVMTASQNAELKAIVGARPFVLEAKTVELQIRAAEA-------G 246

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLPD+ V+ NP L R+  ++  P    V+    E L++   ++A  N++
Sbjct: 247 VGIALLPDFAVEQNPRLCRL--ELSRPLEVDVWLGVHEDLRSVASIQAAMNYV 297


>gi|170695597|ref|ZP_02886741.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170139584|gb|EDT07768.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 320

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 137/291 (47%), Gaps = 22/291 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++A+  S + AA  L LS  + ++++  +E  +G++L  R  R ++LT +G    R  
Sbjct: 14  FILLAKLRSLSGAARALDLSPPAATKRLGVIEQRLGVRLVNRTTRSVSLTPEGETYLRYA 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S++  ++   +  +  +   P G LRI  T+  G+  +   + EF   +P +++Q  + +
Sbjct: 74  SQIVGQVREMEEAISGAKRDPQGLLRINATLGFGRTTIAPLVSEFAKRFPAVEVQFEVTD 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+     D AIR  + +  S L  R++++      A+P YL+    P  + +L +H 
Sbjct: 134 RPVDLVEGAFDMAIRFGE-LPDSRLSARRIMSNRRFLCASPKYLEKYGTPERVDDLAEHR 192

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGIAL- 243
            I     I +  +D      V R I    I  ++V   LS      ++++ + G GI + 
Sbjct: 193 CI-----IHRQNDD---AYGVWRYIVNDHIEAIKVKGALSSNDGDIVLRWALDGHGILIR 244

Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               L  Y+     NLV  + + + PS  ++  YP     T + +AF +F+
Sbjct: 245 SEWDLAKYVQSGRLNLV--LPNTVLPSADLFVYYPRQKNQTVRARAFIDFL 293


>gi|254248947|ref|ZP_04942267.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875448|gb|EAY65438.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 350

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +    SFT AA+ L +S+++ +R +  LE  +G+ L  R  R L  T +G   +
Sbjct: 24  MRIFTRIVEMNSFTRAAQALGISRATATRTVQELEAALGMPLLVRTTRALRPTPEGDAYY 83

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   ++  +  ++ +++ PSG LR+     +   ++   L EF   +PD+++ L 
Sbjct: 84  RRCVSITADVDELEASIRGAALHPSGPLRVELPASVASTIVLPALGEFHARHPDLELTLA 143

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  +  D   D  DC+IRL   +  SSL+ R+L ++     A+P YL     P +  +L 
Sbjct: 144 VAGRAGDRIGDAIDCSIRL-GALPDSSLVARRLGSLERVTCASPAYLDRFGVPRTPDDLG 202

Query: 188 KHNLI 192
            H  +
Sbjct: 203 AHRAV 207


>gi|54293278|ref|YP_125693.1| hypothetical protein lpl0326 [Legionella pneumophila str. Lens]
 gi|53753110|emb|CAH14557.1| hypothetical protein lpl0326 [Legionella pneumophila str. Lens]
          Length = 287

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  V     F  AA +  +S +++SRQI+ LE E+  +L  R  R L+LT+ G+
Sbjct: 4   FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   +   +L   +I +  S  +  G L + ++       L   L EF+ L P +QI
Sbjct: 64  RYYQQCKKTLLELNEAEIAIASSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123

Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  +  D++ +  D    + +  P +   L+++++ T      A+P YL     P S
Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGPPE---LVRKRVSTTRYVLCASPDYLAKNGIPES 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL KH  IT     P  +  F      ++   EP    L +N   ++ +  +LG GI 
Sbjct: 181 PSELGKHRYITHSMRNPDNLVTFK---DNEQIYVEP---VLWLNDSRALCECALLGMGII 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L +YIV +   +  L+ ++ +    S +VY  Y  +     K++ F +F
Sbjct: 235 KLHEYIVAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284


>gi|323519879|gb|ADX94260.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
          Length = 300

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 145/300 (48%), Gaps = 20/300 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT++G +
Sbjct: 6   EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YPDI+I+
Sbjct: 66  FLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P   +E
Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTPTQPEE 184

Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L++H+LI F      +  P  + D  + A           S ++ +S  ++ Q  + G G
Sbjct: 185 LEQHDLIGFTRPTYINSWPIKVGDEYFFAQ----------SKIKASSGETVRQLTIRGHG 234

Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ I KD     L+ + ED I   +  ++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQNIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|265999210|ref|ZP_05465375.2| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
 gi|263092670|gb|EEZ16886.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
          Length = 325

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H
Sbjct: 27  MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 86

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 87  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 146

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     A P YLK    P +I++L 
Sbjct: 147 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVATPRYLKERGTPQTIEDLQ 205

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP G      LQ NS   + +  + G GIA    +
Sbjct: 206 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 259

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 260 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306


>gi|188532592|ref|YP_001906389.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188027634|emb|CAO95484.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 300

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 136/283 (48%), Gaps = 21/283 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++LR +  V  SGS T AA+QL+ + S ISR +  LE+++   L +R  R + L+
Sbjct: 1   MKITLEELRAWVTVVDSGSITAAADQLNQTTSGISRALGRLESKLQTTLLHRTTRRIALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   ++   +E  + ++      PSG+LR+        + +   + EF   +P
Sbjct: 61  EEGQIFLQHARQIIRSVEAAEEQIARRREIPSGRLRVNAATPFMLHAIVPLIPEFSRRFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  D   ID+     D AIR+ + ++ S+L  R L +  +   A+P YL    EP
Sbjct: 121 LIQLELTSDEVVIDLLEQQTDIAIRIGE-LRDSTLHARALGSSRLRLMASPDYLAEYGEP 179

Query: 181 LSIQE-LDKHNLITFGDLIPKCMEDFN----WLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            ++ E L  H L+ F +L     E  N    W +  +    +P IS    +S  ++ Q  
Sbjct: 180 HNVAELLANHRLLGFCNL-----EQHNIWPLWHSEKELLHIKPTISA---SSGETLRQLA 231

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIME----DVITPSFTVYF 271
           V G GI  + D++ + +     LV ++E    ++  P   VY+
Sbjct: 232 VNGMGIVRISDFLSRADLASGRLVPVLESQTHEMRHPIHAVYY 274


>gi|167032448|ref|YP_001667679.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166858936|gb|ABY97343.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 317

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 16/254 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    +  T  G+ 
Sbjct: 8   DQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDNLESAVGSRLFTRSTHAVRATPAGNA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL+ YP + +Q
Sbjct: 68  FAERARRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVQ 127

Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+   +    D  +R   P+  + L+   L  +   A A+P YL +   P  
Sbjct: 128 LRLIDSFVDLHGSHLGEVDLVLRA-GPLADTRLVATPLAYMVRIACASPAYLASRGIPTC 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVL 237
             EL  H+ + +  L P     F W  +V    G+ R+       +  N+  +++   + 
Sbjct: 187 PSELPGHDGLDWDGLAPP----FAWRFSV---AGQTRLYRPARMRMAANNAETLLFGALA 239

Query: 238 GSGIALLPDYIVKD 251
           G GIA LP +++ +
Sbjct: 240 GLGIAHLPTWLISE 253


>gi|89899887|ref|YP_522358.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344624|gb|ABD68827.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 320

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 119/251 (47%), Gaps = 10/251 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR F  VAR  +F  AA+ L L+QS++SRQI  LE EVG+ LF RH R + LT  G++L
Sbjct: 17  QLRAFEAVARHLNFRAAADDLSLTQSAVSRQIQALEDEVGVGLFLRHTRAVELTSAGAQL 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  S    ++++    ++ S+ + S  + I+T        L   L+ F   +PDI I+ 
Sbjct: 77  LRAVSPSLERMDSAVRLIRRSAGRKS--VAISTWASFASMWLIPRLEAFQSEHPDIDIR- 133

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQR-KLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +D  D+ + +D  D  + LR  + SS      +L    +   A+P  LK+       ++
Sbjct: 134 -IDATDVSVDLDTTDIDLALRYTLPSSVPSNAVRLFGEQLTPVASPWLLKSGHPLKRGED 192

Query: 186 LDKHNLITFGD----LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L    LI   D    L  + +    WL   D    EP+   L  N    I+Q  + G G+
Sbjct: 193 LAHFALIEASDANRTLHLEWLTWRRWLDEHDFKKLEPK-RWLYFNYAHQIVQAALTGQGV 251

Query: 242 ALLPDYIVKDN 252
           AL     V D+
Sbjct: 252 ALARTPQVADS 262


>gi|238792768|ref|ZP_04636399.1| Glycine cleavage system transcriptional activator [Yersinia
           intermedia ATCC 29909]
 gi|238727876|gb|EEQ19399.1| Glycine cleavage system transcriptional activator [Yersinia
           intermedia ATCC 29909]
          Length = 305

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 131/299 (43%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    + L   +L    +    AP  L           
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPTILTG--------- 176

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238
             +H L    DL    +       +W+A   R +G P+I+  Q    +    ++Q  V G
Sbjct: 177 --EHGLKVPADLANHTLLHDTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHG 233

Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIAL+ + + +      R++    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 234 QGIALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|332532582|ref|ZP_08408459.1| putative transcriptional regulator, LysR family protein
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038003|gb|EGI74451.1| putative transcriptional regulator, LysR family protein
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 295

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 117/257 (45%), Gaps = 13/257 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  V   GSF+ AA  L    + +SR +S LE  +   L  R  R L LTE+G  
Sbjct: 8   EDLETFITVVDCGSFSGAANLLDQQVAKVSRAVSRLENTLQCTLLNRTTRRLELTEEGHT 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   E  + L T +  ++     PSGKLRI        + L   + EF   YP I + 
Sbjct: 68  FIKYAREGLNTLYTGEEAIKLLKHAPSGKLRIDAASPFVLHQLTPLIGEFAKQYPHITLD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +  ID+     D AIR+   ++ S+L  RKL +  +   A+P Y+KN      I +
Sbjct: 128 ITSHDSIIDLLEHKTDLAIRI-GDLKDSNLHARKLGSSQLRIVASPEYIKNNATITQIDD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGIAL 243
           L  H +I F D  PK      W      P+  P +    L  +S  ++ Q C+   G+AL
Sbjct: 187 LQNHKIIGFSD-SPKLN---TW------PLVRPALFTFSLSASSGETVRQLCIANQGVAL 236

Query: 244 LPDYIVKDNPNLVRIME 260
           L  +++ ++    +++E
Sbjct: 237 LSHFMIGNDLKTGKLVE 253


>gi|299068455|emb|CBJ39678.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 289

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 17/248 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             WD +R F  +AR GS + AA +L +  ++++R+   LE  +G++LF R  RG  LT +
Sbjct: 1   MQWDDVRHFLALAREGSLSAAARRLGVEHTTVARRADALEQALGVRLFDRLPRGWRLTAE 60

Query: 63  GSKLHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G  L      +  +  +  +I     S++  G +R++    L  +++  NL      +P 
Sbjct: 61  GGALAEQAGRMEQEAASLARIAAGAGSLR--GTVRVSAPPTLASHVIAPNLAALRRRWPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L+ + ++ ++    AD A+RL +P  S++L  R L  +    YA P  L       
Sbjct: 119 IDLVLLGEKRNANLMAHEADLAVRLSRPT-SAALATRPLGDLGYGLYATPEVLARPEA-- 175

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                 +   I + D + + M    WLA      G  R+  L+ +   ++ +  + G G+
Sbjct: 176 ------EWEFIGYDDTL-RHMPQQRWLAAY---AGARRM-VLRCSDLAAVHRAALTGLGV 224

Query: 242 ALLPDYIV 249
           A LP ++V
Sbjct: 225 AALPHFLV 232


>gi|218516764|ref|ZP_03513604.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 297

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 132/298 (44%), Gaps = 33/298 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  +GS + A   L  S + +S++I  LE  +G +L  R  R ++LTE G   +
Sbjct: 6   LEIFAKVVSTGSMSLAGRMLGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFY 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +  +   S +  G L+++     G+  +  +LK F+  +PD+ I L+
Sbjct: 66  DRVLGILAGLEEAEFYISGRSAQMHGTLKVSAPTSFGRMHIAPHLKAFMQAHPDLAINLV 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  DI     D AIR+ + +  SSL+ R+L  +     A+P YL    EP  I +L 
Sbjct: 126 LTDEFSDIIGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLAAHGEPRDIDDLK 184

Query: 188 KHNLITFGDLIPKCMEDFN---WLATVD------RPIGEPRISCLQVNSYLSIMQYCVLG 238
            H          +C+   N   W  T        RP G      L  NS   I +  + G
Sbjct: 185 HH----------RCLPAHNGDAWRLTGPEGALSLRPEG-----MLITNSSEVIREAVISG 229

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
            GIAL   + + +     R+++  + P++      T+   YP       K++ F +++
Sbjct: 230 LGIALRSTWDIGEELKAGRLVQ--VLPAYEGSHNVTLSAVYPSRQFLPAKVRLFIDYL 285


>gi|206559558|ref|YP_002230319.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035596|emb|CAR51482.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 301

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 133/297 (44%), Gaps = 20/297 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  + +SG  +  A  LH S   +SR+++ LE  +G++L  R +R   LT++G  L+  
Sbjct: 9   LFRAIVQSGGISAGAFALHSSPPVVSRRLAALERRLGVRLAQRSSRRFKLTDEGLLLYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++   + E+        G LRI    D G++ +   L +F   +  +  QL+  
Sbjct: 69  CCSILDQIRDAEAEVASRGGAARGLLRIGAPADFGRHHIAPLLADFTSRHSGLYTQLLPS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +++ +D  D  +R   P     +I RKLV+      AAP YL     P+   EL  H
Sbjct: 129 DAGLEVGVDPCDVILRFGLP-NDLGVIARKLVSTASVLCAAPAYLAKHGAPMQPAELGDH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGIAL 243
           N +         ++  + L  V     E     ++V+  LS      ++Q+ + G GI+ 
Sbjct: 188 NCLR--------LQGRHRLNDVWHFDNEGTRQDVRVDGTLSSTSGEVLLQWALAGEGISQ 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
              + V +   N  LVR++ +   P+  +Y  Y        +++ F ++I   L+AR
Sbjct: 240 EAYWDVAEHIANGRLVRVLPEYTCPALDLYAIYASGSPIPPRIRLFVDYIDHVLRAR 296


>gi|157372495|ref|YP_001480484.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157324259|gb|ABV43356.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 298

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 132/283 (46%), Gaps = 22/283 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  SGS T AAEQL  + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKITLEELLAFTTVVDSGSITAAAEQLGQTTSGISRALSRLEKKLDTTLMRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        E+ + +E  + ++    + P+G+LR+       ++++   +  F   YP
Sbjct: 61  EEGQSFLGHAREIINSVENAEEQMALRRLIPAGRLRVNAAAPFMEHVIVPLVAGFRQSYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  DN  ID+     D AIR+   ++ S++  R L    +   A+P YL     P
Sbjct: 121 QIELELNTDNLIIDLLEKRTDIAIRI-GALRDSTIHARLLGASRLRILASPDYLARYGTP 179

Query: 181 LSIQELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            S++ L  H+L+ F      +L P   +     A        P IS    +S  ++ Q  
Sbjct: 180 ASVEALRDHSLLGFTQPESLNLWPLRYQQAQHFAIT------PTISA---SSGETLRQLA 230

Query: 236 VLGSGIALLPDYIVKDNP---NLVRIME----DVITPSFTVYF 271
           + G GI  L D++ +D+     LV ++E    DV  P   VY+
Sbjct: 231 LRGEGIVQLADFMTRDDQRSGRLVPLLEQDTLDVRQPINAVYY 273


>gi|320084383|emb|CBY94176.1| Uncharacterized HTH-type transcriptional regulator ycaN [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 313

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 15  LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 75  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 135 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 195 NHRCLCHRFTRESGLYRWEFVRGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 253

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 254 DVHEDLQDGQLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 303


>gi|319793586|ref|YP_004155226.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596049|gb|ADU37115.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 311

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 97/187 (51%), Gaps = 4/187 (2%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V   GSFT AA+ L  S ++++R ++ LE  +  +L  R +R L+LTE 
Sbjct: 2   DRLRAYEVFVTVVARGSFTKAADALDTSPANVTRYVNELEAHLRTRLINRTSRRLSLTEG 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  ++  T+     +S++P G+LRI   +  G  +L     +F+  YPD+
Sbjct: 62  GEALFDRAKSILEEVAETEALATTASLQPRGRLRINAPLSFGSLVLAPLWPKFMAKYPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +DI  +  D AIR+ +   S + I R+L        A+P YL +   P  
Sbjct: 122 ELDIALIDRVVDIVEEGYDLAIRISR-TSSGNHIARRLGRSQNLVCASPDYLSSHGMPQV 180

Query: 183 IQELDKH 189
             +L +H
Sbjct: 181 PADLSRH 187


>gi|78063497|ref|YP_373405.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971382|gb|ABB12761.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 310

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 125/289 (43%), Gaps = 17/289 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+ 
Sbjct: 12  NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                    H +     +L    VK    L I+TT       L   L +F   +PD  ++
Sbjct: 72  YFSDVQRALHAIADATDKL----VKRRAALTISTTPSFASKWLIPRLAQFTDAHPDYDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D +      D  D AIR  KP     L    L  + + A  +P  L     P S + 
Sbjct: 128 VIADPQIATFRHDGVDLAIRYGKPPFGKHLATHALFPLDVCAVCSPALLA---APASPRA 184

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    DL P+      +LA +  P+       L+ N     +   V G GIAL 
Sbjct: 185 LAGHVLLHDAHDLWPE------FLAAMPEPVDLDPHKGLRFNQTSLAIDAAVAGQGIALA 238

Query: 245 PDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
            D +V+ +    R+ +  D   P S   Y  YP   ++   +   R ++
Sbjct: 239 TDPLVERDIAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDAIVVMREWM 287


>gi|330979517|gb|EGH78120.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 294

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 128/278 (46%), Gaps = 9/278 (3%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH-RVTSE 72
           +A  GSFT  A    + +  ++R I  LE  + ++LF R  R + LT +G + + RV + 
Sbjct: 2   LAELGSFTKVAGATQVGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFYERVKNN 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +    ETT +  +  S    G+LRI       Q     +LK F   +PDI++ L + ++ 
Sbjct: 62  LADLAETTSMFDRNGSTL-RGRLRIDIPAAFSQRSFMESLKGFTRAFPDIELALGVTDRT 120

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           +D+  +  DCA+R+ + +  SSL+ R++    M   AAP YL+    P ++ EL  H  +
Sbjct: 121 VDLVAEGIDCALRIGE-LPDSSLVVREIGRATMVTCAAPSYLQAFGTPETLDELAGHCGV 179

Query: 193 TFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
           +F  L  +      W  +++      P    + VN   + +Q  + G GI   P   V+ 
Sbjct: 180 SF--LSGQSNRPLPWHFSLNGDDFALPPRGGITVNESNAYVQCGLAGFGILQAPGIAVES 237

Query: 252 ---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              +  LV ++E        V   YP       +++AF
Sbjct: 238 FLASGELVEVLEKFRPLPRPVSVLYPSRTHLAPQVQAF 275


>gi|319760839|ref|YP_004124776.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|317115400|gb|ADU97888.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
          Length = 312

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 132/285 (46%), Gaps = 10/285 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F+++ R GS +  A +L L+  ++SR+++ LE  +G++L  R  R  +LT +G +     
Sbjct: 14  FHLLVRCGSLSATARELGLTTPAVSRKLALLEQRLGVQLLNRTTRRNSLTPEGEEYLVQA 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   +E  +  L+ S  +P G LR+  T+  G++ +   +  F   YP +QIQ  L  
Sbjct: 74  RRILADIEDVEHSLRRSMAEPLGLLRVNATLGFGRSHIAPVISRFCKTYPQVQIQFHLSV 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
               ++ D  D  IR  +P   + +I RK+        AAP YL+    P    +L +H 
Sbjct: 134 TPPPLTDDAFDVCIRFGEP-PDARVIARKVAANRRLLCAAPAYLERHGTPRVPADLVRHQ 192

Query: 191 LITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLPDYI 248
            I+    I    + +  W  +  R     +++   V +   I + + + G GI +  ++ 
Sbjct: 193 CIS----IHHGQDAYGIWRLSAGRRTESVKVAETMVTNDGDIAVAWALDGHGILMRAEWD 248

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     +  L +++E   TP   +Y  YP   +   ++ AF +F+
Sbjct: 249 IDKYLHSGRLRQVLEQYSTPPADIYAVYPSRHQKARRVTAFVDFL 293


>gi|262043623|ref|ZP_06016732.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038961|gb|EEW40123.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 313

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F  AAE+L +S + +S+++S LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVMLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    EL +    P G LRI ++   G+ ++   L    L YP ++++
Sbjct: 68  IYEWAQRILQDVDEMMDELSDVRQVPQGTLRIISSFGFGRRVVAPALSALALQYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + ++ +D+  +  D  IR+   I + +LI R+L   H    A+P +L     P  + +
Sbjct: 128 FDVQDRLVDLVNEGVDLDIRVGDDI-APNLIARQLAANHRVLCASPQFLARHASPKQLSD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 187 LAA---------LP-CLV----IKERDHPFGVWQLHSKEGQHAIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V++N    +LV+++ D   P+  V+  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVRENIASGHLVQVLPDYWQPA-NVWAVYVSRLATSAKIRTTVEFL 291


>gi|260466672|ref|ZP_05812859.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029535|gb|EEW30824.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 301

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 140/299 (46%), Gaps = 17/299 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-- 63
           + + +F   A SGS + AA  L    +++SR++S LE  +  +L  R  R LTLT+ G  
Sbjct: 5   EAMSLFVAAAESGSLSAAARHLGTPLATVSRKVSELERHLKTRLLNRSTRRLTLTDAGHA 64

Query: 64  --SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             +   R+  +V     T   E       P+G+L I  +I  G+  +   +  FL  YP 
Sbjct: 65  YLAACRRILEDVGDAERTAGGEYS----APTGELIITASIVFGRLHVLPVVTAFLAAYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L ++   ++ D+ D AIR+ + +  S ++  ++ +I   A A+P YL     P 
Sbjct: 121 VDIRLTLGDRIAQLAEDHIDLAIRIGR-LPDSRMVATRVGSIRHVACASPAYLAEHGAPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
           + ++L+ H+ ITF  L         W   VD+  +  P  S L+VN+  + +     G G
Sbjct: 180 TPKDLETHSCITFEGLGSLA----TWTFAVDKSDVPVPVRSRLRVNTAEAAIDAATAGVG 235

Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  +  Y IV    +  L  ++ED     + V   +    +   KL+AF +F   + R+
Sbjct: 236 MTRVLSYQIVAAVRSGALQPVLEDFEPEPWPVNLVHAGQGRLPVKLRAFLDFAGPRLRE 294


>gi|238028095|ref|YP_002912326.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237877289|gb|ACR29622.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 327

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 137/300 (45%), Gaps = 23/300 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L LTE
Sbjct: 5   AHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  + +     +Q+    P G +R++  + L Q ++   L EFL  +P+
Sbjct: 65  AGQLFYQHCQAMLAEAQAAMNAVQQLRASPRGTVRVSVPVTLSQTMMSRLLPEFLHRFPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + + N+ ID+  D  D A+R+R +P ++++++ R L         +P  L     P
Sbjct: 125 VRVLVRVTNQVIDLFEDSIDVALRVRSEPPENANIVVRPLWRTEQMLVGSPSLLSQNAPP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQ 233
           L+  +L +   +      P    D   + T+  P G       EPR   L     ++I +
Sbjct: 185 LAPGDLGRFETLD----TPSG--DGRHVFTLIAPDGTRHQHEHEPR---LVTADLMTIRE 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA LP+ +  +      L  +M     P   +Y  +   +   G   A R+F+
Sbjct: 236 AVLDGVGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVF---VSRQGMPPAVRSFV 292


>gi|169794243|ref|YP_001712036.1| putative transcriptional regulator; transcriptional activator
           [Acinetobacter baumannii AYE]
 gi|215481801|ref|YP_002323983.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter
           baumannii AB307-0294]
 gi|239502768|ref|ZP_04662078.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter
           baumannii AB900]
 gi|301509960|ref|ZP_07235197.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter
           baumannii AB058]
 gi|332850321|ref|ZP_08432655.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332871571|ref|ZP_08440065.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169147170|emb|CAM85029.1| putative transcriptional regulator; transcriptional activator
           [Acinetobacter baumannii AYE]
 gi|213988055|gb|ACJ58354.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter
           baumannii AB307-0294]
 gi|332730779|gb|EGJ62089.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332731425|gb|EGJ62717.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 300

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 145/300 (48%), Gaps = 20/300 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT++G +
Sbjct: 6   EELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YPDI+I+
Sbjct: 66  FLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYPDIEIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P   +E
Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTPTQPEE 184

Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+ H+LI F      +  P  + D  + A           S ++ +S  ++ Q  + G G
Sbjct: 185 LEHHDLIGFTRPTYINSWPIKVGDEYFFAQ----------SKIKASSGETVRQLTIRGHG 234

Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ I KD     L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|241207243|ref|YP_002978339.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861133|gb|ACS58800.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 298

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 30/306 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + +F  A E+L +++S++S+ +  LE  VG+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRVGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119
           E G            ++      ++E   +PSG LRI T   + +N L G  L  F+   
Sbjct: 61  EAGEVFFEAVRPSVRQVNDAMQTVREMQARPSGLLRI-TVSSIAENFLSGTLLAGFMEAC 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHY 173
           PDI++ + + + + DI     D  +RL        +I++ ++ I +       A A+  Y
Sbjct: 120 PDIKLDITITDDEFDIVEAGFDAGVRL------GEVIEQDMIAISVSEEQRQCAAASRSY 173

Query: 174 LKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYL 229
           L     P   +EL  H  I +    D  P     + W  T  DR         +  N   
Sbjct: 174 LDRRGHPRHPRELQNHACIGWRPRPDTAP-----YRWEFTENDRDFDVSVDPTVTTNDMG 228

Query: 230 SIMQYCVLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            +++    G+GI          YI  D   LV ++ED   P    Y  YP   +   KL+
Sbjct: 229 MMIRMACAGAGITFGMAETFQSYI--DRGELVPLLEDFCPPFPGFYLYYPRRQRQPLKLR 286

Query: 285 AFRNFI 290
           A  +++
Sbjct: 287 ALVDYV 292


>gi|148977078|ref|ZP_01813718.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145963547|gb|EDK28809.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 192

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 1/186 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  VA    F+ AA+QL  S S +SRQ+S LE  VG+ L  R  R ++LTE G 
Sbjct: 4   FEGINEFVAVAECHGFSAAAKQLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTESGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++   L+    ++     + SG LR++      +N +   L EF   +PD+ I
Sbjct: 64  TYYQQCKDLVIGLQQANEQVASQQTQLSGTLRVSAAGAFAENHVAAALMEFAKSHPDLTI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  + K ++   D  D AIR  + +  S L+ RKLV   M A A+  Y+     P   +
Sbjct: 124 EMNFNTKMVNFIEDGIDFAIRYGR-LDDSGLVARKLVDRPMAAAASKAYIDQYGAPTHPE 182

Query: 185 ELDKHN 190
           +L +H+
Sbjct: 183 QLKQHS 188


>gi|323529971|ref|YP_004232123.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323386973|gb|ADX59063.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 297

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 130/289 (44%), Gaps = 11/289 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VA   SFT AA +L  SQS++S     LET +G++L  R  R + LT  G
Sbjct: 5   DLIDLNAFVAVAEERSFTRAAARLLTSQSALSHTSRRLETRLGVRLLTRTTRSVALTPAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +     +  ++ T   +      P G LRI T      ++L   ++EF+  YPDI 
Sbjct: 65  ETFLQGLKPAFEAIDLTLGTVGSLRESPRGTLRITTPRHAAVSVLWPVVQEFVRDYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    D++ D  D  IRL + +  + +  +    + +   A P Y+     P   
Sbjct: 125 VEVNIDAAFRDLADDRFDAGIRLGELVAPNMVAVKIGPALRLAIVATPGYVAQRGIPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L +H  I F   +P     + W     R   + R+   L  +    I+   V G G+A
Sbjct: 185 HQLAQHACINF--RLPGSGALYAWQFKKGRQEMKVRVEGPLTFDDPDMILAAAVDGQGVA 242

Query: 243 -LLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            L+ D+   +++D   LVR++ED  + +F+ Y  Y    KN     AFR
Sbjct: 243 CLIEDHAAPMIRDG-RLVRLLEDWCS-AFSGYHLYYPTRKNNS--AAFR 287


>gi|241206800|ref|YP_002977896.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860690|gb|ACS58357.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 300

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR+GS T AA +L L+QS++SRQ+S LE ++G++LF R  + + LT  G    
Sbjct: 14  LAAFEAVARTGSVTAAARELDLTQSAVSRQVSALEEQLGVELFLRERQTMLLTLAGDGYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E   ++ +  + L+ +     G L +A     G   L   L  FL+  P + I L+
Sbjct: 74  REIREALRRISSASLNLRAN--PHGGTLNLAILPTFGTRWLAPRLGRFLVANPGVTINLV 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN--CREPLSIQE 185
                 D  +D  D AI    P    + +   L++       +P +LK    + P  +  
Sbjct: 132 TRLSPFDFRLDSIDAAIHFGHPHWPGAELA-LLMSERTVPACSPDFLKRYAIKAPEDLLA 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
               +L T     P   E   W A     +    +  +  + + +  Q  + G G+ALLP
Sbjct: 191 APLLHLTT----RPDAWE--QWFA--GNGVSFENVHGMLFDQFATAAQAAIAGLGVALLP 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +++++     +LV  ++  +      Y  +P    +   L AFR++I  +A
Sbjct: 243 TFLMQEEIRRGDLVAAVDREMESRERYYLAFPPERADYAPLAAFRDWIIAEA 294


>gi|146291222|ref|YP_001181646.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145562912|gb|ABP73847.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 320

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 126/272 (46%), Gaps = 9/272 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA+ GSFT AA+ L ++ S++S+ I  LET +G KL +R  R ++LT  G   
Sbjct: 20  EIRHFVTVAQLGSFTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSY 79

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     L+  Q  L      PSG++R+   +  G+  +   L      YP +++ +
Sbjct: 80  LIDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLSLSQKYPKLELSI 139

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++  D+  D  D A+R+ +   +  L+ R+L        A+P Y      P S ++L
Sbjct: 140 TFNDRATDLFNDGIDLAVRVGQLGDTVDLVARRLGEQRRVICASPAYFGRLGTPQSKEDL 199

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL--QVNSYLSIMQYCVLGSGIALL 244
            +H  I    L     +   WL   +  I E     +  ++    +I+   + G G+A +
Sbjct: 200 SQHQCIVGWPL----GQQHRWLLKNEDGITEAHDIPVRHEIADCEAILAATLAGVGLAQV 255

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           P ++V+D      LV +++D+ +    ++  +
Sbjct: 256 PIWLVEDYLKTGELVSVLDDLASDDTPIHLIW 287


>gi|307609093|emb|CBW98533.1| hypothetical protein LPW_03631 [Legionella pneumophila 130b]
          Length = 287

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  V     F  AA +  +S +++SRQI+ LE E+  +L  R  R L+LT+ G+
Sbjct: 4   FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   +   +L   +I +  S  +  G L + ++       L   L EF+ L P +QI
Sbjct: 64  RYYQQCKKTLLELNEAEIAIASSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123

Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  +  D++ +  D    + +  P +   L+++++ T      A+P YL     P S
Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGPPE---LVRKRVSTTRYVLCASPDYLAKNGIPKS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL KH  IT     P  +  F      ++   EP    L +N   ++ +  +LG GI 
Sbjct: 181 PSELGKHRYITHSMRNPDNLVTFK---DNEQIYVEP---VLWLNDSRALCECALLGMGII 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L +YIV +   +  L+ ++ +    S +VY  Y  +     K++ F +F
Sbjct: 235 KLHEYIVAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284


>gi|307295586|ref|ZP_07575422.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878625|gb|EFN09845.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 319

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 138/291 (47%), Gaps = 21/291 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF   AR  +FT AA++L ++Q+++S Q+  LE  +GI LF R  R + LT++G ++ 
Sbjct: 23  VRVFEAAARLENFTAAAQELGMTQAAVSYQVKLLEERLGISLFQRAGRKVALTDRGREIA 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V S  + ++      L +     S  L I+         L   +  F + +P + +++ 
Sbjct: 83  TVVSRAFDQMREGFAALTQDH---STVLTISCMNSFAHLWLAPRIGTFQMRHPGLAVRID 139

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYL-KNCREPLSIQE 185
             N+ +D + D  D A+R  + I     ++ KL+T +  A   +P +L KN   P++   
Sbjct: 140 ATNRVVDFARDGVDVAVRGGEGIWPG--VEAKLLTHNRIAPVCSPGWLAKNG--PIA--- 192

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            D H L     L P  +    W A V     G+     + ++S     +  + G G+A++
Sbjct: 193 -DAHALHAMPRLSPDDLWWHEWFAGVGVEADGKGLRPAIALDSQAMEGRAAMAGQGVAIV 251

Query: 245 PDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
             ++ K       ++E V  PS+     + +  YP   +N  K+KAFR++I
Sbjct: 252 NPFLWKAEMEAGLLVEAV--PSYVRERASYWVAYPPHARNAPKVKAFRDWI 300


>gi|270260903|ref|ZP_06189176.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044387|gb|EFA17478.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 296

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 15/294 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V   GSF  AA+++ +S + + + I  LE  +   L  R  R   LTE G   +  
Sbjct: 9   VFVRVVEKGSFVAAADEMAISPTMVGKHIRYLEQRLNAPLLNRTTRRQGLTEAGRVFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +    +  +   +     PSG LRI+  +  G  +L   L EFL  +PD++ +++L 
Sbjct: 69  CRRLLADADAAEASARALLSSPSGLLRISAPVTFGNRVLTPILTEFLQQHPDVEAEVVLS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  + A R+  P+    L+ R L    M   A+P YL     P   ++L +H
Sbjct: 129 DRKVDLIEERYEAAFRI-GPVADDGLVARALPDYRMTLAASPGYLTQHGVPTRPEQLSEH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +   F         D N    +    GE   P    L+++S   + +  + G GIAL   
Sbjct: 188 SCFGFSQW------DGNHFWRLQGAQGEISVPVRPRLRMDSGEGVRRAALAGFGIALHAA 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            ++ ++     LVR++ D       ++  Y    + + KL+AF       AR W
Sbjct: 242 MLLDEDIAAGRLVRVLPDYSPLPRPMHLVYLPERRQSPKLEAF--IALTVARLW 293


>gi|260553874|ref|ZP_05826142.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260404994|gb|EEW98496.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 300

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 146/300 (48%), Gaps = 20/300 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT++G +
Sbjct: 6   EELIAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLIERTTRKLKLTQEGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YPDI+I+
Sbjct: 66  FLTKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFREYYPDIEIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P   +E
Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTPTQPEE 184

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +H+LI     T+ +  P  + D  + A  +          ++ +S  ++ Q  + G G
Sbjct: 185 LKQHDLIGFTRPTYINSWPIKIGDEYFFAQAN----------IKASSGETVRQLTIRGHG 234

Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ I KD     L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDQIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|170700036|ref|ZP_02891060.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|172062405|ref|YP_001810056.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|170135051|gb|EDT03355.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|171994922|gb|ACB65840.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 309

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 123/272 (45%), Gaps = 9/272 (3%)

Query: 23  AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82
           AA QL ++ S ++ +I  LE  V   LF+R  R + L++ G   +R  +EV  ++     
Sbjct: 22  AARQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSDVGETFYRECAEVVGRVNELTD 81

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
           +++E    P+G+LRI        +     L EF   YP IQ+ +I++++ +D   +  D 
Sbjct: 82  QMRELRATPTGRLRIQMLPGFALDHFGVPLAEFNRRYPGIQLDIIVNDRVVDPVEEGFDI 141

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202
           A ++  PI S SLI+R+L  +     A+P YL     P   +EL +H    +     +  
Sbjct: 142 AFQIFPPI-SESLIERRLFVVRRLFCASPAYLDAHGAPQHPRELLQHTTALYSGYPSRN- 199

Query: 203 EDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI 258
               W  T    + E  +   ++ NS   + +Y + G G+  LP  +  +      LV I
Sbjct: 200 ---RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASEALVAGRLVPI 256

Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + D      +    YP   +   K+KA   F+
Sbjct: 257 LTDFQIAPLSFAAVYPATQRQALKVKALVEFL 288


>gi|85060105|ref|YP_455807.1| transcriptional regulator [Sodalis glossinidius str. 'morsitans']
 gi|84780625|dbj|BAE75402.1| transcriptional regulator [Sodalis glossinidius str. 'morsitans']
          Length = 307

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  V    SFT A   L L +S+++  I  LE  +G  L +R  R +T T+ G  L+
Sbjct: 7   LQSFVWVVELASFTQAGNTLGLPKSTVAEHIQTLEGVLGACLLHRTTRRVTPTQDGLVLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   +E      ++    P G+LR+       +  +   L EFL  +P IQ+++ 
Sbjct: 67  DRARDVLASMEELDGLFRQQGPVPDGRLRVDMPTAFARLEVFPRLGEFLQAHPAIQVEIS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D+     DC +R+ + +   +L+ R+L  + M  YA+P YL+    P++  +LD
Sbjct: 127 CTDRRGDVVRKGFDCVVRIGQ-LNDDNLVARRLGKLRMINYASPAYLRAYGVPVTPADLD 185

Query: 188 KHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H LI +  ++    E F +     + +   P+   R++    ++Y +    C+ G GI 
Sbjct: 186 RHVLIDYVQVLGSQSEGFVYQQHGRMVSRQMPV---RVTVNNADAYEAA---CLNGLGII 239

Query: 243 LLP--DYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P   YI +  +  LV I+   + P   +   Y        ++K F +++
Sbjct: 240 QVPVARYIGLFTSGQLVEILPYYLPPPMDITLLYAHRRHLPPRVKVFIDWL 290


>gi|330811022|ref|YP_004355484.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379130|gb|AEA70480.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 332

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 5/191 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GSF+ AA Q   S S+ISR IS LE  +  +L  R  R L L++ G ++
Sbjct: 12  EMAIFVKVVETGSFSEAARQSGSSPSAISRSISRLEKALATRLLQRTTRKLRLSDGGEEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   E+     +      + + +  G++R++    +G+ ++  ++ EFL  YP + ++L
Sbjct: 72  FKRCQEMVAAARSVMEISGQFTQEAEGRIRVSVPKAVGRFVIHPHMPEFLRRYPKVDVEL 131

Query: 127 ILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+++ +D+  D+ D AIR+  + P+    L+ R+L+TI     A P YL     P    
Sbjct: 132 FLEDRQVDLIDDHVDLAIRITDQPPV---GLVGRQLLTIDHLLCATPQYLAEHGTPTHPH 188

Query: 185 ELDKHNLITFG 195
           +L +H+ I  G
Sbjct: 189 DLLEHSCIYLG 199


>gi|288961046|ref|YP_003451385.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288913354|dbj|BAI74841.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 310

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 132/305 (43%), Gaps = 30/305 (9%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR   VF  +A SG    AA  L LS + +S  ++ LE  +GI L  R  +G +LT  
Sbjct: 2   DKLRAMEVFVQIADSGGIRSAASMLRLSPAMVSMHLAQLERTLGIPLIQRSPKGSSLTTD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   + +L  +S    G+L I     +G  ++   L EF+  YP+I
Sbjct: 62  GQSYLDHCRTILEQISGAEAQLSGTSGLRRGRLSIDMPATVGNCIVLPILPEFMAQYPNI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
              +    +  D+S +  D  IR+  PI  + LI R L    +   AAP YL +  EP +
Sbjct: 122 TFDISYSARAFDLSDEGYDIMIRV-GPIADTGLIARPLGFCQLATAAAPSYLAHHGEPQA 180

Query: 183 IQELDKHNLITF-----GDLIP-KCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSI 231
           I++LD H +I       G ++P + + D   +      ++    GEPRI           
Sbjct: 181 IEDLDTHRVINIRSSRSGRIVPWQFVRDGQTMFRELPGSLLFNDGEPRIHA--------- 231

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
               +LG G+   P Y +     N  L RI+E        +   Y    ++   + AF +
Sbjct: 232 ---ALLGLGLVQAPVYQLSGLLANGRLCRILERFDARMPQISLLYSPQRRSQQLVHAFID 288

Query: 289 FIFLK 293
           F+  +
Sbjct: 289 FLLAR 293


>gi|222084573|ref|YP_002543102.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722021|gb|ACM25177.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 298

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 32/302 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +R F  VAR GS   AAE L +  S++ R+I+ LE  +G ++F +   G  LT  
Sbjct: 2   IDWDDIRYFLAVARGGSVRAAAEGLGVYHSTVLRRIAQLEERLGAQMFEKLPSGYRLTAA 61

Query: 63  GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G ++  + +E+    H+LE T++  ++ SV+  G LR+     L  +LL  +L +F  L+
Sbjct: 62  GEEVLELANEMEASSHQLE-TRVFGRDQSVR--GLLRVTLAPTLATHLLMPDLADFAHLH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI++ ++   +  +++   AD AIR+        +  RK + +++H    P        
Sbjct: 119 PDIEMDIVSSGELANLTNREADVAIRV--------VYDRKTLPLNLHGLKGPELFSGV-- 168

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI------GEPRISCLQVNSYLSIMQ 233
                 + +  L  +    P   +   W+      I      GE R + +   +     Q
Sbjct: 169 -----YMSRDRLAAWHSGAP---DPVRWIVISIHGIPDWASEGEVRTTGVPFRTTDGEAQ 220

Query: 234 YCVL--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +  G G+  LP ++   +P LVR+    +    T++       + T +++ F  F+F
Sbjct: 221 IVAVRQGLGMTTLPCFVGDADPLLVRVPGTDLHMHGTLWLLTQGETRKTKRVRLFTEFVF 280

Query: 292 LK 293
            +
Sbjct: 281 RR 282


>gi|170750230|ref|YP_001756490.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656752|gb|ACB25807.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 290

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 117/287 (40%), Gaps = 16/287 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD  R    VA  G  T A+ +L ++ S+  R+++ LE  +G +LF R   G   T
Sbjct: 1   MELDWDDFRFVKAVADRGGLTAASAELGINHSTAFRRLAALEARLGTRLFERLRTGYVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  +      +   +      +      PSG+LR+         LL   L  F   YP
Sbjct: 61  AAGQAMVDAAGRIETDVTRFARAVAGQGETPSGELRVTAPAGFAAELLMPMLASFAERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I+I+LIL    +++S   AD AIR+ R+P  S +L+ R+L       Y         R 
Sbjct: 121 EIRIELILAEATLNLSRRDADVAIRISREP--SETLVGRRLALTAWAVYG--------RA 170

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +  +L +   I+ G L+               P    R   L++N+   +      G 
Sbjct: 171 DRAYGDLAREAWISPGPLV--AGGSLTRFVEARAPSDRVR---LRINAVPGLEAAVEAGL 225

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GI  LP +    NP L R+          ++      L++  +++AF
Sbjct: 226 GIGPLPCFTADVNPALRRLSGPHPELGADLWILTHPDLRHAARVRAF 272


>gi|197247928|ref|YP_002145124.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197211631|gb|ACH49028.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 307

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 69  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 189 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 247

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 248 DVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297


>gi|124267309|ref|YP_001021313.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124260084|gb|ABM95078.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 293

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 99/185 (53%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF    + GS + A  QL+LS S+IS+ +S LE+ +G++L  R  R L+LTE G +  
Sbjct: 1   MQVFVESVKRGSLSAAGRQLNLSPSAISKLLSRLESRLGVRLINRTTRSLSLTEGGERYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   +E+ +  L     +P+G LRI +T    ++ L   + EF   YP + ++L 
Sbjct: 61  KRCLEILTDIESAEDSLTSFVREPTGTLRINSTQGFAKHQLLEFMAEFQGRYPRLTLELQ 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  + +D+  +  D AIRL + ++ +SL+ RKL        A+P YL     P    +L 
Sbjct: 121 ITGQAVDLIDEGVDLAIRLGE-LRDTSLVGRKLGESQRLVCASPQYLNARGRPTRPSDLL 179

Query: 188 KHNLI 192
            H+ +
Sbjct: 180 DHDCL 184


>gi|254467513|ref|ZP_05080923.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206684514|gb|EDZ44997.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 295

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 133/291 (45%), Gaps = 21/291 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-S 64
           D +R F  VA   SFT  A Q+ +S    S+ ++ LE ++G +L  R  R +TLT+ G +
Sbjct: 5   DCMRTFAAVAAQSSFTGGARQMGISTKLASKYVARLEEQLGAQLLNRTTRKVTLTDTGRA 64

Query: 65  KLHRVTS--EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            L R     + + +LE   ++L++  +  +G +RI     LG   L   L  F   +P +
Sbjct: 65  YLERCLPLLDQFDELEDV-VQLRQQEL--AGPVRITAPTGLGSRELVEALHPFQQAHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+L ++ + I  +  D A+R    ++ S+L+ RKL ++     A+P YL    EP  
Sbjct: 122 TVELVLSDRHLPILEEGVDLAVRF-GALKDSTLVARKLCSMRRVVVASPEYLAAHGEPAG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
            + L   N +    L+    +   W     R  G   I+     + NS  ++      G 
Sbjct: 181 PEALAARNCL----LLTSAPQPEAW--AFGRGSGARTITVGGSFRANSPRAVAHMAAHGL 234

Query: 240 GIALLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GIA  P Y     ++D   L  + E   T   T+Y  YP +   T +++A 
Sbjct: 235 GIARCPHYTALPFLRDG-RLQVLFEKQETDPVTLYAVYPPSRHLTARIRAL 284


>gi|116250064|ref|YP_765902.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254712|emb|CAK05786.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 297

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 133/306 (43%), Gaps = 30/306 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + +F  A E+L +++S++S+ +  LE  VG+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRVGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119
           E G            +++     ++E   +PSG LRI T   + +N L G  L  F+   
Sbjct: 61  EAGEVFFDAVRPSVRQVKDAMQTVREMQARPSGLLRI-TVSSIAENFLSGTLLAGFMEAC 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHY 173
           PDI++ + + + + DI     D  +RL        +I++ ++ I +       A A+  Y
Sbjct: 120 PDIKLDITITDDEFDIVEAGFDAGVRL------GEVIEQDMIAISVSEEQRQCAAASRSY 173

Query: 174 LKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYL 229
           L+    P    EL KH  I +    D  P     + W  T  DR         +  N   
Sbjct: 174 LERRGHPRHPGELQKHACIGWRPRPDTAP-----YRWEFTENDRDFDVSVDPTVTTNDMG 228

Query: 230 SIMQYCVLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            +++    G+GI          YI  +   LV ++ED   P    Y  YP   +   KL+
Sbjct: 229 MMIRMACAGAGITFGMVETFQPYI--ERGELVPLLEDFCPPFAGFYLYYPRRQRQPLKLR 286

Query: 285 AFRNFI 290
           A  +++
Sbjct: 287 ALVDYV 292


>gi|50085610|ref|YP_047120.1| LysR family transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531586|emb|CAG69298.1| putative transcriptional regulator (LysR family) [Acinetobacter sp.
           ADP1]
          Length = 288

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 133/263 (50%), Gaps = 18/263 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD ++VF  VAR+G+ T AAE+L+L  +++SR++  LE ++ + LF RH  G  LT +G 
Sbjct: 3   WDDVKVFLAVARTGTLTTAAEKLNLGIATVSRRLERLEQDMAMTLFTRHQTGYQLTLEGE 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    +E +     +  E  ++  +  G +R+A + +L   L+  +L+     +P+++I
Sbjct: 63  AL-LSNAEAFENAALSLTESGQNHAQAQGLVRLAVSENLANGLIIPSLQSLFSRHPELRI 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++    +  ++    AD AIR  +P    +L  ++L T+    YAA  Y+K       IQ
Sbjct: 122 EINSGVQLTNLHRRDADLAIRTIQP-DVGNLTIKRLGTLRFGLYAATSYMK------FIQ 174

Query: 185 ELDKH----NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + D H    + + + D   + +   +W+    R     +   ++ NS  + +     G G
Sbjct: 175 DHDLHPDQCHYVGWAD-THQHLSLAHWMKDFTR----NQNFKIETNSLSTQIDAVKSGLG 229

Query: 241 IALLPDYIVKDNPNLVRIMEDVI 263
           I LLPD+I  +   LV+I ++ +
Sbjct: 230 IGLLPDFIA-NQLGLVQINDNTL 251


>gi|238764778|ref|ZP_04625720.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           kristensenii ATCC 33638]
 gi|238696976|gb|EEP89751.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           kristensenii ATCC 33638]
          Length = 298

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 12/286 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68
           VF  +   GS   AAE L++S++ ++R ++ +E   G +L +R  R L+LT  G S L R
Sbjct: 9   VFVAIVERGSMIAAAEALNMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTHAGESTLTR 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +E QE+  +  G LRI+ +  LGQ+ +   + ++L  +P + + L +
Sbjct: 69  CRHMLEFAKDMDLVEGQEND-ELRGLLRISCSQSLGQSAVAIAVTDYLRRHPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           DN+ +++  +  D A+R+   +   +LI R L   H    AAP YL     P S  +L  
Sbjct: 128 DNRTVNLVEERIDLALRITNDLD-PNLIARPLSICHSVVCAAPSYLSAKGIPKSPPDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           HN +T+     K +  F+         +G      L  N  + ++   + G+GI L P Y
Sbjct: 187 HNCLTY-SYFGKSLWHFDHQGIKSSVAVG----GNLSANESVVLLSGALDGAGITLQPSY 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                     L+R++ D    +  +Y  Y    +    L++  +F+
Sbjct: 242 SAAPYIARGELIRLLPDYQPQAMGIYGIYTSRRQMPATLRSMLDFL 287


>gi|218682783|ref|ZP_03530384.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 894]
          Length = 298

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 126/295 (42%), Gaps = 17/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR GSFT A  +L ++Q+++S QI  LE  VG  LF R  R + LTE 
Sbjct: 7   FPLNALRVFEAAARLGSFTKAGGELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIVLTET 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E +  L       ++S     G L I++T       L   L  F L +P I
Sbjct: 67  GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++       ID + +  D  IR         L+  +L+ +      +P   ++      
Sbjct: 124 AVRFQATADIIDFTREQIDVGIRWGDG-NWPGLVLHRLMGLEFTPMLSPKLAESAGGIKE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++L K +L   GD+  K   +   +   D   RP  +     ++ ++ ++       G 
Sbjct: 183 PRDLLKFDLFDAGDIWWKQWFEAAGVTETDLDRRPRNQLGSQAVEADAAMA-------GH 235

Query: 240 GIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+A+L          L R+    E   +     +  YP+  +N  K+KAFRN+I 
Sbjct: 236 GVAILNPAFYAGEIALGRLYQPFELTRSDGKAYWLVYPDNRRNVPKIKAFRNWIL 290


>gi|319791750|ref|YP_004153390.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594213|gb|ADU35279.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 327

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 145/299 (48%), Gaps = 21/299 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR  +F  AAE++ L+QS++SRQI  LE EVG+ LF RH R + LT  G++L 
Sbjct: 18  LRAFEAVARHLNFRAAAEEMALTQSAVSRQIQSLEEEVGVSLFLRHTRAVELTSAGAQLL 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +++    ++++S+ + S  + + T        L   L+ F    P+I I+  
Sbjct: 78  LSVQQSLPRIDMAVRQIRQSAGRKS--VSLTTFASFASMWLIPRLEAFQRDNPEIDIR-- 133

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +D  D+ + ++ AD  I LR  P ++      +L   ++   A+P  +K+     + +++
Sbjct: 134 IDASDVAVDLEVADVDIALRYGPREAMPPTAVRLFGENLTPVASPWLIKSSPPIKTPEDI 193

Query: 187 DKHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +  LI  GD     +E   W     +  ++R   +P+   L  N    ++Q  + G G+
Sbjct: 194 TRFTLIEAGDAHRTHLEWLTWRRWFEVNGLER--AQPK-RWLYFNYAYQMVQAALTGQGV 250

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP---EALKNTGKLKAFRNFIFLKA 294
            L    ++ +   N +LV ++      S   Y+       AL+   ++KAF +++ L+A
Sbjct: 251 VLARSSLIAESLANGDLVEVLPQHRMDSPMSYWLIAGPRNALRP--EIKAFWDWLLLQA 307


>gi|238896749|ref|YP_002921494.1| putative DNA-binding transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238549076|dbj|BAH65427.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 309

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 129/302 (42%), Gaps = 37/302 (12%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R L LTE G   
Sbjct: 6   RMSVFAKVVELGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSLGLTEAGKIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  + +    +L   +  P G LRI  +  + QN+L     + L  YP + + L
Sbjct: 66  YQGCRRMLFEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLARITAKMLKEYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q SSL  R+L ++ M   AA  YL     P    +L
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVLCAAKSYLAQAGNPEKPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP------IGEPRISC-------LQVNSYLSIMQ 233
             H                 WL    RP      I    IS           N  +++++
Sbjct: 185 AGH----------------AWLEYSVRPDNEFVIIAPEGISTRLTPQGRFVTNDPMTLVR 228

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRN 288
           +   G GIA +P     +  N  R   +++ PS+      VY  Y E  K   K++   N
Sbjct: 229 WLTAGVGIAYVPLMWAIEEIN--RGELEILLPSYQSDPRPVYALYTEKDKLPLKVQVCIN 286

Query: 289 FI 290
           ++
Sbjct: 287 YL 288


>gi|172065035|ref|YP_001815747.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997277|gb|ACB68194.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 313

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP + ++L 
Sbjct: 67  DRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P S+++L
Sbjct: 127 LSQHVPDIIDEGYDVSLQLSSAELPDSGLVSQRLGDVHSVLCASPAYLKERGTPHSVRDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H+ +    + P    D  W   +D P G    E  +   QVN   ++      G GI 
Sbjct: 187 EAHSCLQI--VTPIFPRD-RW--HLDGPDGRETFELPLPDFQVNIADALGAALRAGLGIG 241

Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ +      TVY  Y        K++ F +F+
Sbjct: 242 SLPMSSAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292


>gi|73539022|ref|YP_299389.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72122359|gb|AAZ64545.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 312

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 131/283 (46%), Gaps = 21/283 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W    +F  V   G FT  AE   + +SS S  ++ LE+++G++LF R  R + +TE
Sbjct: 3   TIEWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLESQLGVRLFERTTRRVRVTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L+   + ++ +L     E    S + SG LRI+T  ++G   L   L   + L+P 
Sbjct: 63  RGQRLYDRVAPLFAELHEINAEAASVSDEVSGVLRISTPYEVGSQHLSDGLSRLMRLHPR 122

Query: 122 IQIQLIL--DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +++ + +  D  D+ I   Y    +     +Q +S   +++V I    YAAP  +++   
Sbjct: 123 LRVHVDVSWDQPDL-IRHGYDLAFVMTNTRLQDTSFASKRVVLIERGFYAAPALIRDRGL 181

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQY 234
           P + Q+L      T G+      +D  W    D     R   EPRI C   N+ L  ++ 
Sbjct: 182 PRTPQDL--AGWPTLGN-----ADDHFWEFLRDDIETARLDVEPRI-CTH-NAELR-LKA 231

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            + G G+A L    V+D      LVR++    +    VY   P
Sbjct: 232 AIDGLGVARLSPRFVQDQIQQGQLVRVLPAYSSSPLKVYVLMP 274


>gi|13473281|ref|NP_104848.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14024029|dbj|BAB50634.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 302

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 137/294 (46%), Gaps = 18/294 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ ++ F  VA +GS + AA +L  SQ ++ R I  LE  +G+ LF R   G  LTE 
Sbjct: 4   IDWNLIKSFVTVAETGSLSAAARKLSASQPTLGRHIGELEQALGVTLFRRGRSGYALTEA 63

Query: 63  GSKL---HRVTSE---VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           G+ L    +  SE    + +L    +E  E      G +RIA +  +   +L        
Sbjct: 64  GATLFERGKAVSEQASAFSRLALGSVEAIE------GTVRIAASEVVAAYVLPDMTARLG 117

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           +  P I+++++  N+  ++    AD AIR+ KP Q + L+ RK+  I + A AA  YL  
Sbjct: 118 VEEPGIEVEIVASNQVENLLRRDADIAIRMVKPAQ-NELVARKVCDIELCACAAISYLDR 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P+   +L  H LI F D   + +  F        P+        + ++ + + +   
Sbjct: 177 RGRPVGPADLVDHPLIGF-DRSDEMIRGFTQFGI---PVTRSSFR-FRADNQVVLWEAVR 231

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+GI L  + +   +P + +++  +  PS  V+      ++++ +++   +F+
Sbjct: 232 AGNGIGLGQEPLADRDPLVEKVLPGLPLPSLPVWLAMHRDVRSSVRIRRVADFL 285


>gi|99078453|ref|YP_611711.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035591|gb|ABF62449.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 304

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 135/293 (46%), Gaps = 14/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V   G+ + AA  + +S +  S +IS LE  + ++LF R  R L  TEQG  
Sbjct: 5   NNIRTFVRVYELGNMSAAARDMRISAAVASSRISQLEEHLKVRLFQRTTRLLHPTEQGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +E  + ++   +  P G L +A  + LGQ L+   + +F   YP I I+
Sbjct: 65  FYHGAVKILEAVEEAEADISNVTQTPRGTLYVAAPLGLGQRLIAPAVPQFNAAYPLINIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A  L  P + S+L  RK+        AAP YLK    P S  E
Sbjct: 125 LRLSDRKLDLAAEGLDAAFFLGLP-EDSNLKIRKITDCPRVLCAAPAYLKARGTPTSSAE 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
           L  D H+ +   +L      +F W   +  P G  R++     + +    + Q+ + G G
Sbjct: 184 LKTDAHDCL---NLRYPGAPEFQW--PLHGPDGLRRVAVTGPFESDHGDVLTQWALDGHG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I L P + + +   +  LV ++ D    +  +   Y        K++ F +F+
Sbjct: 239 IILKPVFEISEHLASGRLVPVLPDEPPATIQMACLYMHRRHQDPKVRLFLDFM 291


>gi|325293551|ref|YP_004279415.1| transcriptional regulator LysR family [Agrobacterium sp. H13-3]
 gi|325061404|gb|ADY65095.1| transcriptional regulator LysR family [Agrobacterium sp. H13-3]
          Length = 373

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 4/283 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V R GS + AA +L ++Q +  R I  LE  +G  LF R   GL  TE   
Sbjct: 68  WDFYRTFLSVLRDGSLSAAARELGITQPTAGRHIGALEEAIGFPLFIRSPHGLMPTEAAL 127

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                K  G +RI+ +  +G  +L   +     ++P ++I
Sbjct: 128 ALRPYAENLAATAAALMRAASGEVGKIEGTVRISASDIIGVEMLPPIIAAMQEIHPRLEI 187

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +   D+    AD AIR+ +P Q  +++ R +    +  +A   YL     P +++
Sbjct: 188 ELSLSDTLEDLLRREADIAIRMTEP-QQDAIVMRYIGNFRLGFHATRDYLARAGIPKNME 246

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GSGIA 242
           EL+ H +I F    P        + ++D  I +      ++ +  ++ Q  ++   +GI 
Sbjct: 247 ELNNHRMIGFDRKTPFIRAAIQRMRSLDPEIPDIEEISFEIRADSNLAQLAMIRASAGIG 306

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +    + + +P LV+++     P    +    E LK + + +A
Sbjct: 307 VCQIGLARKDPRLVQVLPKTDIP-LHAWVAMHENLKTSPRCRA 348


>gi|317403819|gb|EFV84296.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 307

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 5/239 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA++ SF+ AA  L + +S++SRQ++ LE  VG++L  R  R + LT+ G    
Sbjct: 7   MELFVEVAKTHSFSRAAAALGVPKSTLSRQVAELERSVGLRLLSRTTRKVELTDAGRLYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +    ELQ+    PSG LR+    D G + L  +  EF   YPD+   L 
Sbjct: 67  ERCQRIVAEAQIAHEELQKLVDTPSGPLRVNMPADFGTDFLAESFMEFSRRYPDVTFFLD 126

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L N D        +D +I + + +  S+ I R L  +  H YA+  YL+   EP    +L
Sbjct: 127 LANPDHAQRVFQTSDISIEIGE-LPDSTQIARLLGMLPAHLYASREYLEKHGEPKHPSDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I F            W L + D+ I     +   VN      +  +LG+GI +L
Sbjct: 186 TRHECIEF--RAEGAGRVTRWPLNSGDQHIQFTPGNRFSVNGVAMARRLAMLGAGITVL 242


>gi|299768287|ref|YP_003730313.1| transcriptional regulator, LysR family protein [Acinetobacter sp.
           DR1]
 gi|298698375|gb|ADI88940.1| transcriptional regulator, LysR family protein [Acinetobacter sp.
           DR1]
          Length = 300

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 145/300 (48%), Gaps = 20/300 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT++G +
Sbjct: 6   EELVAFIAIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++ ++L   + ELQ+S    +G +RI +      +++   + +F   YP+I+I+
Sbjct: 66  FLVKARKILNELNAAEEELQKSDQGTAGLIRIDSATPFVLHVIAPLMHKFRECYPNIEIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ ID+     D A R  + +  SSL  + +    +   A+P YL     P   ++
Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLFIVASPEYLAIKGTPTQPEQ 184

Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L++HNLI F      +  P  + D  + A  +          ++ +S  ++ Q  + G G
Sbjct: 185 LEQHNLIGFTRPAYINSWPIKVGDEYFFAQAN----------IKASSGETVRQLTIRGHG 234

Query: 241 IALLPDYIV-KD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ V KD     L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEVWKDIQEGRLIALFEDQIEHQYQSIHAVYYQQEHLPKRIRLFIEFLVEQLKD 294


>gi|288935805|ref|YP_003439864.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890514|gb|ADC58832.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 301

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 132/288 (45%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++++  V  + SF  AAE L   +S++SR +  LE  +G +L  R  R L++T +G +
Sbjct: 5   DAMQLYVTVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++   +      S +P+G+ ++     L ++ +   + EFL  YPD+++ 
Sbjct: 65  YYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPDLELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI  +  DC IR  +   S++L+ R L        A+P +L     P  I +
Sbjct: 125 LCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQGIDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  +  G L  +     +WL +++      R+   L V+   + +Q  V G G+  +
Sbjct: 185 LHQHRAV--GYLNHRTGRTIDWLFSLNDGDCAIRMQETLVVDDTDAYIQAGVQGLGLIRV 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y+ +    +  LV  +E   +    +   YP+       ++AF ++
Sbjct: 243 ASYLAQPYLQSGALVACLEQAAS-DLPLSLVYPQNRYLPPAVRAFYDW 289


>gi|326388086|ref|ZP_08209689.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207252|gb|EGD58066.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 302

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 121/267 (45%), Gaps = 4/267 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF +  R GS + A   L +S +  ++ +  LE  +G  L  R  R L+LT+ G+   
Sbjct: 8   IEVFVLAMRLGSLSAAGRSLGMSAAMAAKHLGQLEERLGTTLVNRTTRRLSLTQAGADYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L   + E    S    G LR+      G   +     EF + +P + I+L 
Sbjct: 68  DRAERILAELREAENEASARSQVIEGLLRVNAPASFGVMHISSLAAEFGVRHPGVTIELG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D AIR+ + +  SSL  RKL  +H+   AAP YL+    P S+++L 
Sbjct: 128 LNDRYVDLLEERWDVAIRIGQ-LADSSLKARKLAAVHLALCAAPSYLEQHGTPRSVEDLK 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN +++   +   +    W    D  +       +  N+  ++++    G GI   P +
Sbjct: 187 HHNCLSY--TLSSRLGGNTWGFGRDGSVRVAIKGSMLANNGEALVKAACTGQGIVYGPRF 244

Query: 248 IVKDNPNLVRIME-DVITPSFTVYFCY 273
           I  +  N   ++E ++  P+  +   Y
Sbjct: 245 IAAEALNSGELVEFELDIPAMDMGAVY 271


>gi|307729898|ref|YP_003907122.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584433|gb|ADN57831.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 294

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 133/288 (46%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS T AAE+  +S + + + I  LE+ +G +L  R  R  +LTE G + +
Sbjct: 7   MEIFVAVVEAGSLTAAAERFEISSAMVGKHIRSLESRLGTRLLTRTTRRQSLTEIGRQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L++   +  G  +    + ++L  +P++ ++L 
Sbjct: 67  EQCRRILADVKDAESLAEAMAAAPRGVLKVTVPLTYGVEVFSPAMIDYLSAWPEVTLELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+  D+  +  D A+R+   +  SS + R L    M A A+P YL     P +  +L 
Sbjct: 127 LSNRITDLVEEGFDAAVRIGH-LADSSFVARPLKPYRMRACASPAYLARAGIPRTPADLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + F   +P   E   W    +     P R    + N+  ++    + G G+ L P+
Sbjct: 186 HHECLGF---LPWGREG-TWRLGGEGAAQSPLRAGRFRANNGQALKVAALRGFGLVLQPE 241

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            ++    ++  LV ++ED +     V+  YP   + T KL +F +F+ 
Sbjct: 242 ALLAREIESGELVPVLEDHLPQGAPVHLVYPRDRRATPKLTSFIDFVM 289


>gi|264680812|ref|YP_003280722.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262211328|gb|ACY35426.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 303

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 13/255 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D ++L  F  V   G F  A   L L +S +SR+++ LE  +G +L  R  R   +TE G
Sbjct: 5   DLNELYYFAQVVEHGGFAPAGRALGLPKSKLSRRVALLEERLGAQLLLRSTRSFAVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++    +  + E  +  +     +P GK+R++  + L  + +   L EF+ LYP ++
Sbjct: 65  KRYYQHCRAMLTEAEAAEESVALVHSEPCGKVRMSCPVALLASRVGRMLGEFMRLYPRVE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+   N+ +D+  +  D A+R+R  P+Q S L+ R L        AAP  L+   +P  
Sbjct: 125 LQVDETNRRVDVVGEGLDLALRVRPPPLQDSDLVLRTLADRRQCLVAAPELLQRLGQPGG 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             +L     +  G +     E   W+     A       +PR   L   S L++    +L
Sbjct: 185 PMDLSAWPSLDMGGV----QETHRWVLHGPDAVRAEVRHQPR---LVTQSMLALRDAALL 237

Query: 238 GSGIALLPDYIVKDN 252
           G+G+  LP   V+++
Sbjct: 238 GAGVVQLPSMFVREH 252


>gi|209885928|ref|YP_002289785.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
 gi|209874124|gb|ACI93920.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
          Length = 304

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 141/301 (46%), Gaps = 20/301 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  V   G+ T AA +L+ S  +++R I+ LE +VG +L +R  R + ++E G +
Sbjct: 5   DAIRVFIAVLDEGNLTKAALRLNRSPVAVTRAIAFLEADVGTELLHRTTRSVRVSEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              V   + + LE   +        P G L I   +  G  +L+  + +FL  YP ++I+
Sbjct: 65  YAVVCRRILNDLEEANLAAAGLHSSPRGVLTITAPVLFGTRILRSVIDDFLEKYPALRIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L ++ ++++ +  D A+R+   +  S LI  K+ ++     A+P YLK      +  +
Sbjct: 125 YLLVDRQVNLAEEGIDVALRIGH-LPDSGLIATKIGSVRRVIAASPSYLKGRPAIRTPSD 183

Query: 186 LDKHNLITFGDL--------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           L  HN I+  +L         PK     +    +     +PR+S   VN+  S+++    
Sbjct: 184 LAAHNCISNFELGHGEVWTFPPKPGTKAHRNVRL-----KPRLS---VNTIESLVRSAAD 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+  +  Y +++      L  +++        V+   P+      K++AF +++  + 
Sbjct: 236 GRGVVRVLSYQIEEEVRKGKLQILLKSAEPDPLPVHLVVPDGRAELSKVRAFIDYVAPRL 295

Query: 295 R 295
           R
Sbjct: 296 R 296


>gi|162449193|ref|YP_001611561.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161159775|emb|CAN91080.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 312

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 2/205 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  VAR G+ + AA  L ++Q ++ R+++  E  +G +LF R   G  L+  
Sbjct: 2   LDWDDLRYFLAVARHGNLSAAARVLKVTQPTVGRRVAAFERRLGARLFQRSPSGFALSAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +      +       +           G LRI  +  L   +L   L  FL  +P I
Sbjct: 62  GESVLGHAERMEQDALAAERAAAGRDAGLRGHLRITASEWLATRVLGPLLVPFLARHPAI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + LI D + + +    AD A+R     +   + QR++  I    YA+  YL +   P  
Sbjct: 122 SVDLIADARWLSLPRREADIALRA-AAFEHHEVFQREVARIGFGLYASEAYLADHGPPDW 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW 207
            ++ + H L+T  D  P  + D +W
Sbjct: 181 GRQCEGHTLVTMND-EPPAIADLSW 204


>gi|94313019|ref|YP_586228.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356871|gb|ABF10959.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 305

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 21/297 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR+F  V   GSFT AA  L    S +SR+I  LE  +G++L  R +R L+LTE G
Sbjct: 6   DLNDLRLFAEVVDRGSFTAAARSLGQQTSKLSRRIRALEEALGVRLLNRTSRSLSLTETG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + H+    V  +    +  + ++  +P G +RI+  + L  + +   +  ++   P +Q
Sbjct: 66  RRFHQHCLAVVAEARAAKEIVDQTRSQPQGTVRISCPVALLSSGVAETISRYVHDNPQVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D AIR+R  P++ + L  R+L        A+P   +    P S
Sbjct: 126 VLVDATNRRVDVIEEGLDFAIRVRPAPLEDTDLAVRQLGLSTFVLVASPELARLHAPPAS 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCV 236
           I+ L     I          E + W   VD    E      PR++    +   S+    +
Sbjct: 186 IESLQDWPTIAMA----SNNERYVW-NLVDAGGKEQAFAHRPRLAT---DDIASLRIAAM 237

Query: 237 LGSGIALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+A+LP ++I +D  +  L+ ++ ++ + S  V+  +P      G + A R+ +
Sbjct: 238 FGVGVAMLPREFIEEDLQSGRLLHLLPELASTSGLVHAIFP---TRRGMVPAVRHLL 291


>gi|332288246|ref|YP_004419098.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
 gi|330431142|gb|AEC16201.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
          Length = 297

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 134/296 (45%), Gaps = 13/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  + +L++F+ +A+ GS   AA +L ++  S+S+ +  LE  + + LF+R  R + LTE
Sbjct: 3   STTYHQLQIFHAIAQEGSINAAARKLGITSPSVSQALKLLEQSMDMPLFWRSTRRVQLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L   T  +  +L++   +       PSG +RI  +    + +LQ +L EF   YP 
Sbjct: 63  AGARLLTQTEPLMRELDSRLEQFLGEEHAPSGLVRITLSRFAYRLILQDHLAEFHRRYPH 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN----C 177
           I + + + +  +D+     D  IR    I  + + ++ L       Y +  YLK      
Sbjct: 123 ICLDIAVYDGTVDLVAQGFDLGIRFGDKIDENMVARQLLPAFQEGLYVSDGYLKQYGTPS 182

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           RE L    L  +  IT G ++P  +E      +V+ P     I C   N   +I      
Sbjct: 183 RENLHQHRLIGYRFITTGQILPLILEQGGESVSVEMPTP---IIC---NDIDTIADGVRA 236

Query: 238 GSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  L   I   + D  + + ++ D       VY  YP+A +   ++ A  +F+
Sbjct: 237 GLGIGRLFTPIHQRLSDKNDFIPVLTDYWRNYPPVYLYYPQASQKIKRVAAVIDFL 292


>gi|264676690|ref|YP_003276596.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262207202|gb|ACY31300.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 326

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 118/253 (46%), Gaps = 19/253 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR  +F  AA++L L+QS++SRQI  LE EVGI LF RH+R + LT  G++L 
Sbjct: 22  LRAFLAVARHLNFRAAADELALTQSAVSRQIQSLEDEVGIPLFLRHSRAVELTGAGAQLL 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    ++ T  +++++  + S  + I T        L   L+ F   YPDI I++ 
Sbjct: 82  HAVQPALESIDATVRQIRQTVGRKS--VAITTWASFAAMWLIPRLEAFQRAYPDIDIRID 139

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS---LIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +  +D+     D AIR    +  +S   L   +LV +     A+P  L++     S  
Sbjct: 140 TGDAVVDLETTDVDLAIRYSAGVSDASAKALFGEELVLV-----ASPALLRSGPAVHSPA 194

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLG 238
           +  ++ LI  GD+    M    WL +  R         LQ   +L       I+Q  + G
Sbjct: 195 DAARYTLIETGDV--HRMPQLEWL-SWQRWFAANGCDQLQPPRWLYFNYAHQIVQAALAG 251

Query: 239 SGIALLPDYIVKD 251
            G+A+    +V D
Sbjct: 252 QGLAIARLPLVAD 264


>gi|260461073|ref|ZP_05809322.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259033107|gb|EEW34369.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 301

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 17/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VAR  SFT AAE+L ++Q+++S QI  LE  VG  LF R  R + LTE G +L 
Sbjct: 18  IRVFEAVARHLSFTKAAEELAMTQAAVSYQIKVLEERVGAPLFLRRPRQIALTEAGQRLA 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              SE +  L       +  +    G L + T +    N L  +L  F + +P + ++L 
Sbjct: 78  PAVSEAFAILGQAYAAARGGA---DGVLCVTTVLTFASNWLAHHLGSFQIAHPSLAVRLE 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY---LKNCREPLSIQ 184
             ++  D + +  D AIR     +   L   KL+        +P     +   REP  + 
Sbjct: 135 TSSRLTDFAREDVDLAIR-SGGGKWPGLEAYKLLDADFTPMLSPKLAASIGGVREPADLL 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L    ++  GD+     + F         + +   S +   +Y +     + G G+A+L
Sbjct: 194 RL---PILDPGDIW--WTQWFEAAGVHSHDLAKRPGSSMGAQAYEA--NAAIAGHGVAIL 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + K    +  L++  + V       +  YPEA +N  K++AFR+++ 
Sbjct: 247 TRALFKAELADGRLIQPFDLVGDDGHAYWLVYPEARRNVPKIRAFRDWLL 296


>gi|169796296|ref|YP_001714089.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|215483754|ref|YP_002325979.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB307-0294]
 gi|301511457|ref|ZP_07236694.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB058]
 gi|332851623|ref|ZP_08433572.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332866512|ref|ZP_08437054.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149223|emb|CAM87105.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|213988425|gb|ACJ58724.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB307-0294]
 gi|332729851|gb|EGJ61185.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332734591|gb|EGJ65700.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 306

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 140/299 (46%), Gaps = 33/299 (11%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +   GSF+ AA+QL++ +++ S  I  LE+ +  +L  R  R +  +  G 
Sbjct: 4   FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPDI++
Sbjct: 64  AFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHQLYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R  + +  S+LI R L+ +     A+P YL     P   +
Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLIDMPQVICASPDYLNKHGTPEQPE 182

Query: 185 ELDKHNLITFGD-----------LIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLS 230
           +L  H  + F             ++    +D+   +W+A  D             N  LS
Sbjct: 183 DLLSHYCVNFFSTSGGRNYPFELMVNGKKQDYFLKSWIAVNDAE-----------NYVLS 231

Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +Q    G+G+  +P Y V +   N  LV+++ +   P  +V   YP+  + + +++ F
Sbjct: 232 ALQ----GAGLIQVPRYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVF 286


>gi|186473865|ref|YP_001861207.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196197|gb|ACC74161.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 332

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 128/297 (43%), Gaps = 22/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G + 
Sbjct: 6   NMRVFVRVVEAGSFTGAAQSLNTTTGAMSRAVSELEAHLRTRLLNRSTRRLALTTAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +   ++  + E   +  +P+G LR+ +   +GQ+ +   +  +  LYP++ ++L
Sbjct: 66  LKRCQLILADIDNAEEEASGAHERPAGVLRMHSFASIGQHYVLPAISRYRALYPEVAVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    AD A+     + +S L+   L T      A+P Y+     P   ++ 
Sbjct: 126 TLSQQLPDLFEGSADVAVVGASTLPNSDLVSLLLGTTFSILCASPAYIHAHDAP---KKP 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
                     L         W  T++ P G   ++    +QVN   S++     G GI +
Sbjct: 183 TDLLHHDCLLLKTPAFPTSEW--TLEGPNGNEVLNVNGPVQVNIAESLIVAIREGMGIGI 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y   D     +LVR++ +       VY  YP            R FI  K R W
Sbjct: 241 LPLYAAIDGLRTGSLVRVLPEYTLQKMNVYALYPS-----------RKFIDAKTRTW 286


>gi|332284339|ref|YP_004416250.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428292|gb|AEC19626.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 307

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 1/172 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  +  +GSFT A+E   L +S++SR+++ LE E+G +L  R  R L LTE G +
Sbjct: 9   NDLILFAYIVEAGSFTGASEHTGLPKSTLSRRLTDLENELGERLLQRSTRRLVLTEFGER 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +  + E      Q   + P G LRI+   +  +      L EF   YPD++++
Sbjct: 69  ILEYARRLQEETEAASALAQHRQMTPQGTLRISLPPEFYELSFVKVLVEFSQQYPDVRLE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKN 176
           L L  + +D+  +  D AIR    +   S+L+ R++ T+    YA+P YL N
Sbjct: 129 LDLSPRRVDLVAERFDVAIRAATQLPDDSTLVARRITTLQNSLYASPGYLHN 180


>gi|259414963|ref|ZP_05738886.1| LysR substrate binding domain protein [Silicibacter sp. TrichCH4B]
 gi|259349414|gb|EEW61161.1| LysR substrate binding domain protein [Silicibacter sp. TrichCH4B]
          Length = 306

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 123/254 (48%), Gaps = 2/254 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  SG+FT AAE L + +S++S  +  LE  +G++L  R  R +  T++G + 
Sbjct: 6   QMNVFIQVVESGNFTRAAEALGVPRSTVSSTVQALEDRLGVQLLQRTTRVVRPTQEGLQF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +   + + ++     SG+LRI     + + L+  +L++F   YP + +++
Sbjct: 66  ADTARGLVDAMAQAEGQFRQRPDAISGRLRIDMPSRIARRLVIPHLQDFRAQYPAVTLEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ ID+  +  D  +RL   +Q S LI RK+  + M   A   YL     P +  +L
Sbjct: 126 SATDRMIDLMSEGIDAVVRL-AVLQDSELICRKIGDVPMLTCAGAGYLAEFGVPETPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+L+ +   +P    +++ L    R I     S L V++    +   + G G+  +P 
Sbjct: 185 ADHHLVNYALRMPAVSSEWDGLED-GREIAVAMQSHLCVDNAECYIAGALHGHGLIQVPV 243

Query: 247 YIVKDNPNLVRIME 260
           Y V D+    R++E
Sbjct: 244 YDVADDIAAGRLVE 257


>gi|190574618|ref|YP_001972463.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190012540|emb|CAQ46168.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 313

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 141/298 (47%), Gaps = 24/298 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +R F  +    SFT A+E L L +++++  I  LE  +G++L +R  R +  T +G 
Sbjct: 4   FTAMRAFVRIVERRSFTRASEDLGLPRATVTDAIKALEQRLGVRLLHRTTRLVVPTPEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +   +++   P G LRI     LG++LL  +L EFL  YP+I++
Sbjct: 64  AFYGRCLRLIADMDDAEAAFRDAP--PRGPLRIEVHGTLGRHLLFPHLPEFLQRYPEIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  D A+R+   +  S L  R+L  +     AAP Y++    P +I+
Sbjct: 122 DVSEGDRYVDLLREGVDAALRVGT-LADSDLAARRLTMLREVTVAAPGYVQAHGLPDTIE 180

Query: 185 ELDK-HNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            L++ H ++ +     G LIP   +    L  V      P  + ++V+   + +   + G
Sbjct: 181 SLEQGHQMVGYRSTATGQLIPLEFQQAGQLRYV------PLQARVRVSGADAFLGAALAG 234

Query: 239 SGIALLPDYIVKDNPNLVR------IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI   P Y  + +P + R      + E   TPS  +   YP     + +L+ F +++
Sbjct: 235 LGIIQAPRY--RMDPYIARGQLVELLPETPPTPS-PLSLVYPRNRTPSPRLRVFIDWV 289


>gi|152994971|ref|YP_001339806.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835895|gb|ABR69871.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 317

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 134/279 (48%), Gaps = 27/279 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA+  SFT AA++L +S+S+IS+QI  LE  +G +L  R+ RG+ LT  G  L 
Sbjct: 23  LLIFVEVAKKRSFTAAAKKLGMSKSAISQQIKRLEESIGHQLLIRNTRGVVLTSAGDTLL 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +     +L  T +EL     +PSG  +++    L + ++   LK+  L +P +  +++
Sbjct: 83  ARSELWSEQLSMTLMELDGEKAQPSGHFKVSVPPFLEKGIVVPVLKQLCLEFPKLTPEVL 142

Query: 128 LDNK-------DIDISM---DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +  K       ++D ++   D  DC  R     + S +             A+P Y+K  
Sbjct: 143 VTEKWQDLIEHNLDAAIFGGDIKDCGYRALSVGRVSEVF-----------CASPMYIKQY 191

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               S ++L  H  I       K ++ F+   T +R I      C +VN+  S ++  + 
Sbjct: 192 GAIESTEQLSSHRFIATAWHREK-LQLFDNKQTNERLISVTH--CAKVNTLTSALEAVLS 248

Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCY 273
             GIALLP+++ + + N   LVR++ ++    +  YF +
Sbjct: 249 DMGIALLPEFLAQTHLNKERLVRVLPEIRGREWHFYFLH 287


>gi|241205691|ref|YP_002976787.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859581|gb|ACS57248.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 299

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 124/293 (42%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V + GS + AA +L L+Q +I R +  LE  +G +LF R   GL  T+   
Sbjct: 7   WDFYRSFLTVLQQGSLSAAARELGLTQPTIGRHVDALELAIGAELFTRSPNGLLPTDAAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                  +G +R++ +  +   +L   L      YP++QI
Sbjct: 67  ALKPYAETLAATAAALLRTASGQREHVAGTVRVSASEVIAVEVLPAILGPLQETYPELQI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +   D+    AD A+R+ +P Q ++L+ R++  I +  +A   YL+    P ++ 
Sbjct: 127 ELSASDMIEDLMNREADIAVRMAEP-QQAALVVRRIGDIPLGFHAHRRYLERHGIPQTLA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI F              A  D           + +S L+ +     G GI L 
Sbjct: 186 DLTNHRLIGFDRQTAYVRMAMKRYAVPDIKF------SYRTDSNLAQLSAIRAGVGIGLC 239

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              + + NP+LV ++ D        +    E+LK + + +A  + +    +D+
Sbjct: 240 QIGLARGNPDLVHVLPDAFAIPLGTWVAMHESLKTSPRCRATFDALVKGLQDY 292


>gi|227112604|ref|ZP_03826260.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 305

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 10/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +   GSF+ AAE+L L ++++S  I  LE  +G++L  R  R + +T++G   +
Sbjct: 11  MRVFVRIVELGSFSRAAERLTLPRATVSNTIKQLEARLGVRLLQRTTRQVQITDEGRVYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++E       +   +P GK+R+     L + ++   L EF   YP + + L 
Sbjct: 71  ERCLQLLAEIEEIDTLFTQQKQQPVGKVRVDMPHSLAREIVVPALGEFYARYPQVTLMLS 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  I++  +  DC +R  +     +L  R L ++     A+  YL     P S+ +L 
Sbjct: 131 ANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQITCASADYLARFGVPRSLDDLS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +  L  +      +++  D  I       LQVN   + +     G GI   P  
Sbjct: 190 GHQMVGYFSLRTEHRYPLEFMSG-DECITRMLPGALQVNGTDAYIASARAGLGIIQAPRR 248

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            ++   ++  LV I+ ++  P+  +Y  Y       G+  A R  +F++  D  F
Sbjct: 249 GLRPFLESGELVEILPEMPPPAMPLYVMY-----APGRFLAPRIRVFIEWLDELF 298


>gi|209694745|ref|YP_002262673.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
 gi|208008696|emb|CAQ78884.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
          Length = 300

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  +G  T AAEQL+L++S++S+++S LE ++GIKL  R  R  +LTE G  
Sbjct: 5   ESMHIFTKVVEAGGITKAAEQLNLAKSAVSKRLSELEQQLGIKLINRTTRTSSLTEAGQS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++      +     + +G +++A  +  G   L   L +F   +P +++ 
Sbjct: 65  YFIKCKLILEEVNDLNCHVSAIHQELNGTIKLAVPLTFGVMHLVPALDDFAKAHPKLKLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D AIR+   + SS+L  + +  IH    A+P YL     P +   
Sbjct: 125 IDFSDRKVDLVEEGIDLAIRIGN-LTSSTLQAKAIAPIHHVLCASPAYLAEHGNPSTPDA 183

Query: 186 LDKHNLITFGDLIPKCME---DFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGSGI 241
           L  H L+ +       +E   + N   TV  P+      C+  N  +L  M   V G GI
Sbjct: 184 LKSHQLLRYRQQPLSGVELRDNKNQAMTV--PM---ETHCIANNGDFLKAM--AVSGHGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P +IV +      L+ IM D    S   Y  YPE      K++   +F+
Sbjct: 237 IFMPTFIVWEELAKGTLLPIMNDYHFNSVHAYALYPETRYLPQKVRKLIDFL 288


>gi|190575828|ref|YP_001973673.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190013750|emb|CAQ47385.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 294

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 126/300 (42%), Gaps = 33/300 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SF  A  +L LS S++S  I  LE  +G+ LF+R  R + LTE G +L 
Sbjct: 9   LAAFAAVARHRSFRRAGAELALSTSAVSYAIRALEERLGVGLFHRTTRSVALTEAGQRLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++     E+ +    P+G LRI  T       L   L  FL  +PD++++L 
Sbjct: 69  ERLQPALGQVNDALEEMNQFRAAPAGLLRINATRAAVPTQLGPRLARFLHAHPDVRVELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHYLKNCREPL 181
            ++  +DI  +  D  +RL +       +   +V + M          +P YL+    P 
Sbjct: 129 ENDGLVDIVAEGYDAGVRLHE------FVPEDMVAVPMGPPLRGLIVGSPDYLRRRPAPQ 182

Query: 182 SIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             ++L  H  I F    G L     E       +D P        L +    ++++  + 
Sbjct: 183 HPRDLATHECIRFRFASGHLYKWQFERGGQALEIDVP------GRLTLCEQGTVVRAVLD 236

Query: 238 GSGIALLPDYIVKDNP-------NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+A    Y+++D          +V ++ED   P       YP+  +  G L+AF + +
Sbjct: 237 GIGLA----YVLEDTARPYIESGQMVAVLEDWSEPFAGFALYYPKQRQMPGALRAFVDML 292


>gi|123443501|ref|YP_001007474.1| DNA-binding transcriptional activator GcvA [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332160578|ref|YP_004297155.1| DNA-binding transcriptional activator GcvA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122090462|emb|CAL13330.1| glycine cleavage system transcriptional activator [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|318606946|emb|CBY28444.1| glycine cleavage system transcriptional activator GcvA [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664808|gb|ADZ41452.1| DNA-binding transcriptional activator GcvA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860872|emb|CBX71155.1| glycine cleavage system transcriptional activator [Yersinia
           enterocolitica W22703]
          Length = 305

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 130/295 (44%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    + L   +L    +    AP  L          +
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLLMGENGLKVPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
           L  H L+             +W+A   R +G P+I+  Q    +    ++Q  V G GIA
Sbjct: 186 LANHTLL-------HDTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIA 237

Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+ + + +      R++    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 238 LVNNVMAQSEIEAGRLVCPFSDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|66046304|ref|YP_236145.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257011|gb|AAY38107.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 303

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 26/296 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW+ LR F + +   S + AA  L +  +++SR+I+ LE  + +KL  R  R   LT
Sbjct: 23  ICFDWEDLRYFVMFSTVSSLSGAARMLGVEHATVSRRIASLEKSLNVKLVDRRKRLYELT 82

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G ++  +  ++  + +        + V    ++ I+    +    L   L  F  ++P
Sbjct: 83  DEGRRVAAIGRQIEAQTQAVGRLAVAAQVVQGVEVTISAPPSVAVEKLVPQLGAFRAMHP 142

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L+ D++   +S   +D  IR  +P++ S ++ R++ T     Y A  YL+  R P
Sbjct: 143 GIVLRLLGDHQYSSLSSCQSDLCIRFSRPVE-SGIVARRIGTASFSFYCARFYLEQ-RPP 200

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--NWLATV--DRP-IGEPRISCLQVNSYLSIMQYC 235
                 + +  I + +   + M D    WL  +  DRP + E +   LQ+ +  +     
Sbjct: 201 ------EHYEFIAYDN---ELMSDSQNGWLRDIVGDRPFVLEAKTVELQIRAAET----- 246

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
             G GIALLP + V+DN  L R+  ++  P    V+    E L+    ++A  N++
Sbjct: 247 --GVGIALLPSFAVEDNNRLCRV--ELSAPLEVDVWLGVHEDLRAVASIQAAMNYV 298


>gi|330502482|ref|YP_004379351.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328916768|gb|AEB57599.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 297

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 7/244 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA  GS + AA  L L+ S++SR I+  E  +G +L  R  R +T T +G    R 
Sbjct: 12  VFATVAEQGSLSAAARALGLTPSAVSRIIARTEQRLGTRLLLRTTRAITFTAEGEAYLRG 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   +   +  + +  V P G+LR++  +  G+  +   +  F   YP+I + L L 
Sbjct: 72  ARRILADMAEVEEAIADQGV-PRGRLRVSAALGHGRMTIVPLVAAFSARYPNITVDLSLG 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI    AD A+R    +  S L  RK+        A+P YL+    P   ++L +H
Sbjct: 131 DEVVDILGGQADVAVRFGH-LPDSPLTARKVGETGQVVVASPDYLQRHGTPQQPEDLLQH 189

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           N + F         + NW    D      ++   ++ +S  ++ Q+  +G+GIA + ++ 
Sbjct: 190 NCLRFN----FRRAEPNWPFVRDGQAFSLKVCGNIECSSGEALAQFARVGAGIARIGEFT 245

Query: 249 VKDN 252
           V ++
Sbjct: 246 VAED 249


>gi|237654299|ref|YP_002890613.1| LysR family transcriptional regulator [Thauera sp. MZ1T]
 gi|237625546|gb|ACR02236.1| transcriptional regulator, LysR family [Thauera sp. MZ1T]
          Length = 309

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 131/287 (45%), Gaps = 12/287 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   GS   AA  L  +++ +S+Q++ LE  +G  LF R  R L LT  G    R  
Sbjct: 10  FVRVVEGGSMAAAARTLGCTRAQVSKQVAELERRLGAALFERSTRRLVLTPAGEVFLRHA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           +     +++++I ++    +PSG LR++ T+  G++ +   L       P ++I+L+L +
Sbjct: 70  ARALEAVDSSEIAVRNLGERPSGTLRVSATLAFGRHFVAPLLPVVTAANPGLEIELVLTD 129

Query: 131 KDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  D  D A+R+  +P + +  + R L+ +     AA  Y++    P    EL +H
Sbjct: 130 RLVDLVDDRIDLALRMTARPPEDA--VARHLLRLRWVLCAASAYVERHGSPREPAELAQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I    +       +  +A    P      S ++ +S    +   + G GIA+LP Y+ 
Sbjct: 188 ACIGHPAI---GAAPWGLVAAAGAPARVAVRSRVRFDSLDCTLDTVLAGHGIAILPAYLC 244

Query: 250 KD--NPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
           +       +R + D   P+F     +Y CY        K++ F + +
Sbjct: 245 EPALQAGSLRTVLDGWEPAFDAGRDLYACYTPGRVGVSKVRVFMDAL 291


>gi|167719855|ref|ZP_02403091.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 276

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 123/276 (44%), Gaps = 13/276 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGE-----QPRVEWRFDGPHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDNPNLV-----RIMEDVITPSFTVYFCYP 274
              + V   P+L      R++ +  + +  ++  YP
Sbjct: 239 KSIWDV--GPDLAAGRLRRVLPECASSAAPLHAVYP 272


>gi|158333823|ref|YP_001514995.1| LysR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158304064|gb|ABW25681.1| transcriptional regulator, LysR family [Acaryochloris marina
           MBIC11017]
          Length = 306

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 136/295 (46%), Gaps = 18/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +  F  V  +G F  A+ ++ LS+S +++ +  LE  +G++L  R  R +  T+ G 
Sbjct: 4   FDSMYAFTQVVDAGGFAAASRKMGLSRSQVNKLVINLEDSLGVQLLQRTTRKVVPTKTGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   +  + +   +P G LRI   +  G   L   L +FL  + ++++
Sbjct: 64  AFYERCQAILADVAEAEESITQYQTQPKGILRINAPMSFGTEYLAPLLPDFLTQHSELKV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L+++ ID   +  D +IR+     +SSLI   L        AAP YL+    P    
Sbjct: 124 ELVLNDRFIDPIEEGFDISIRISAQPIASSLIVHTLCPAPRVLCAAPDYLEQHGIPRHPD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV------NSYLSIMQYCVLG 238
           +L  H+ + +G   P      +W        G  +I  +QV      N+   + Q  + G
Sbjct: 184 QLKHHSCLHYGYSEPL----HHWQLK-----GPDQIHRIQVQGAICSNNGEVLRQATLKG 234

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALLP ++V ++     L  ++ +  +P   V+  YP +   + K++ F  F+
Sbjct: 235 LGIALLPIFLVGEDLKGERLQVVLSNYDSPGIAVHILYPVSKHLSAKVQLFTAFL 289


>gi|148974083|ref|ZP_01811616.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965780|gb|EDK31028.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 309

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 1/181 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V + GSFT AA    +  SS+S+QI  LE ++G++L  R  R  +LT  G  
Sbjct: 5   NQLLLFLDVVQQGSFTKAATLHDMDNSSLSKQIKKLEQDLGVQLLNRSTRSFSLTSAGED 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +   T  +   +   Q        +P G LRI + I  GQ  LQ  + +F+  YPD+QI 
Sbjct: 65  ILAQTYVLKDTISQIQGIADSYQSEPKGVLRITSPIYFGQQYLQPIITQFMRKYPDVQIV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD+K  +I     D A R  K ++ S+LI +K+   +    A+  ++K   +P + Q+
Sbjct: 125 LSLDDKIANIIAGQFDIAFRFSKLVE-SNLIAKKIADSNFMLVASNDFVKQHGKPKTPQD 183

Query: 186 L 186
           L
Sbjct: 184 L 184


>gi|126737613|ref|ZP_01753343.1| Transcriptional regulator [Roseobacter sp. SK209-2-6]
 gi|126721006|gb|EBA17710.1| Transcriptional regulator [Roseobacter sp. SK209-2-6]
          Length = 296

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 135/293 (46%), Gaps = 21/293 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  ++ +F   A  GSF  AA +L LS S +S  IS LE+++G+ L YR  R L+LT +G
Sbjct: 4   DLRQIAIFAKTADLGSFRKAAAELRLSPSVVSHHISQLESKLGVALLYRTTRRLSLTGEG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +    +    E+    LQ+++ +P G +R+     L  + L   +  +   +P + 
Sbjct: 64  ERLLQAGRTMLEAAESGLNALQQTAAEPQGMIRVTIPSVLSPSPLAERISGYCRQFPRVV 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++  D+  D+ D AIR+  P +  +  +R L +      A+  Y+    + L+ 
Sbjct: 124 LDLEFSDERRDLIADHFDVAIRM-GPGRKRAANRRSLFSARRLLVASSTYMAGQDQILAP 182

Query: 184 QELDKHNLITFGD-------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           ++L++   I F         L  +  ED ++               + VN   ++ Q   
Sbjct: 183 KDLERLEGIDFAPARLLNSRLRKEGAEDTSFKLKTQ----------ITVNDAQALYQLAR 232

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GSG+A +P+++  ++     +  ++ D    S  V+  +P +    G +++F
Sbjct: 233 TGSGVAAVPEFLATEDLASGKICHLLPDWELDSLEVFAEWPASAPRGGIVRSF 285


>gi|170736254|ref|YP_001777514.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818442|gb|ACA93024.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 300

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 133/293 (45%), Gaps = 19/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++++  +   G+FT AA+ L L + ++++ +  LE E+G++L  R  R +++T +G   H
Sbjct: 7   MQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGVRLLNRSTRRVSVTAEGEAFH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++       +    P G+LRI   + L + ++   L +F   YP I++ L 
Sbjct: 67  ARCVQLLAGIDDAFASFPKQRAVPKGRLRIDIALALAKTIVIPALPDFQQRYPQIELVLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D+  +  DC +R+   ++ SS++ R +  + M   A+P Y+     P ++ +L 
Sbjct: 127 ASDQPADLIGEGIDCVVRVGT-LKDSSMVARTVGAVSMATCASPAYIARHGLPRTLDDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGI-- 241
            H  + F     +      W     RP GE       S L  ++  +++   + G GI  
Sbjct: 186 THRAVNF--FTGRNRRVLEW---TFRPHGETVAVKLASSLLTDNSEALLSCGLAGLGIVH 240

Query: 242 ----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               AL P     D+  L+ ++  V      V   YP       K++AF +++
Sbjct: 241 ALRPALQPSI---DSGQLIELLPGVPAVPKPVSVLYPNRAHLPDKVRAFIDWL 290


>gi|157372091|ref|YP_001480080.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323855|gb|ABV42952.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 316

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 123/263 (46%), Gaps = 12/263 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+A  GSFT AAE+L +S++++S++I  +ET  G+ L  R  R + LT+ G 
Sbjct: 10  WTHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKEIETLAGVPLVQRTTRSVRLTDAGL 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L     + + +++ +   + +S+    G +R+   +   +  L   +  FL   P++++
Sbjct: 70  RLVEELRQPFAQIKQSFSGICDSAGPLRGSVRVTAPVAFARQQLVPRITGFLRANPEVRL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ + ++ +  D AIR    +  + +  R L      A A+  Y+K    P+S  
Sbjct: 130 QLEVSDRLVSLTSEGFDLAIRHSDNLPDTHVAWR-LCQTETLAVASADYVKRHGMPVSPA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP-------IGEPRISCLQVNSYLSIMQYCVL 237
           +L +H  + +    P+  E  +W     R        I  P       N+  SI      
Sbjct: 189 DLQRHQCLYY----PRSSESPSWSFVAKRAAEGKTEKIRVPVSGPFATNNSESIRDAAAE 244

Query: 238 GSGIALLPDYIVKDNPNLVRIME 260
           G GIALLPD+  +      R++E
Sbjct: 245 GLGIALLPDFSAQQALADGRLIE 267


>gi|307304356|ref|ZP_07584107.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307322401|ref|ZP_07601759.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306891961|gb|EFN22789.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306902558|gb|EFN33152.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 264

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 7/230 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +  S++SR++S LE  +G++L +R  R + LTE G   +  +  +  +      +L    
Sbjct: 1   MPNSTLSRRVSELEKAIGLRLLHRTTRKIELTEAGQLYYERSKRIVDEARLAHEQLGAML 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
            +PSG LR++  +DL    L   + EF   YP I  +  L  + +D+  +  D AIR+ K
Sbjct: 61  NQPSGVLRVSLPVDLATFYLTPIIGEFARHYPGITFEFDLTPRRVDLVAEPFDVAIRIGK 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            ++ S LI R +     H YA+P Y++   EP +  EL +H  I  G L          +
Sbjct: 121 -LEDSGLITRLIGRHSRHLYASPGYIEASGEPATPAELAEHECI--GMLRSPIWSLHQGI 177

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRI 258
             VD  +         +NS   I    V   GIALLP+ IV ++    R+
Sbjct: 178 NKVDVAVR----GRFTLNSVGMIRALAVNHQGIALLPEKIVAEDVAFGRL 223


>gi|300691543|ref|YP_003752538.1| transcription regulator protein, lys-R family [Ralstonia
           solanacearum PSI07]
 gi|299078603|emb|CBJ51260.1| putative transcription regulator protein, Lys-R family [Ralstonia
           solanacearum PSI07]
          Length = 318

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 129/287 (44%), Gaps = 9/287 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AA++L L +SS+S  +S LE ++G++LF R  R L LT+ G
Sbjct: 5   DWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGVRLFERSTRRLRLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +     L   + E +  +  ++
Sbjct: 65  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAARQLAEVVLEVMREHAGLR 124

Query: 124 IQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ +  + +D ++  Y       R+P+  S ++ +++  +      AP  L+    PL 
Sbjct: 125 IEVDVAPRQVDPLAQGYDIMLTVPREPLPDSGMVAQRVFDLRRAVVVAPALLETL-GPL- 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              +    LI +  L      ++ + A    P+  P    ++ ++    +Q  V G G+A
Sbjct: 183 ---IHPDQLIDWPCLGLSSESEWQFRAPGGEPLNLPLDFRMRTSNSELRLQAAVAGLGVA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +     ++      L  ++ D  +P   VY  +P       K+K F
Sbjct: 240 RITSAFAEELIATGALREVLTDFQSPPMRVYAVFPGRRLMPAKVKVF 286


>gi|270264879|ref|ZP_06193143.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041177|gb|EFA14277.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 314

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 126/264 (47%), Gaps = 14/264 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+A  GSFT AAE+L +S++++S++I  +E   G+ L  R  R + LT+ G 
Sbjct: 10  WTHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKEIEMLAGVPLVQRTTRSVRLTDAGL 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L     + + +++ +   + +SS    G +R+   +   +  L   +  FL   P++++
Sbjct: 70  RLVEELRQPFAQIKQSFSGICDSSGPLRGSIRVTAPVAFARQQLVPRITGFLRANPEVRV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ + ++ +  D AIR    +  + +  R L      A A+  Y+K    P S  
Sbjct: 130 QLEVSDRLVSLTTEGFDLAIRHSDSLPDTHVAWR-LCPTETLAVASADYIKRHGMPSSPA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--------NSYLSIMQYCV 236
           EL +H  + +    P+  E   W + V R   E ++  ++V        N+  SI     
Sbjct: 189 ELQRHQCLYY----PRGSEQPGW-SFVARHSTEGKVDQVRVPVSGPFATNNSESIRDAAA 243

Query: 237 LGSGIALLPDYIVKDNPNLVRIME 260
            G GIALLPD+  +      R++E
Sbjct: 244 EGLGIALLPDFSAQQALADGRLIE 267


>gi|152969572|ref|YP_001334681.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330010187|ref|ZP_08306702.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150954421|gb|ABR76451.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328534603|gb|EGF61180.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 313

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F  AAE+L +S + +S+++S LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVMLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    EL +    P G LRI ++   G+ ++   L    L YP ++++
Sbjct: 68  IYEWAQRILQDVDEMMDELSDVRQVPQGTLRIISSFGFGRRVVAPALSALALQYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + ++ +D+  +  D  IR+   I + +LI R+L   H    A+P +L     P  + +
Sbjct: 128 FDVQDRLVDLVNEGVDLDIRVGDDI-APNLIARQLAANHRVLCASPQFLARHAPPKQLSD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 187 LAA---------LP-CLV----IKERDHPFGVWQLHSKEGQHAIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V++N    +LV+++ D   P+  V+  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVRENIASGHLVQVLPDYWQPA-NVWAVYVSRLATSAKIRTTVEFL 291


>gi|186473956|ref|YP_001861298.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196288|gb|ACC74252.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 308

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 128/287 (44%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF+ AA +L + Q ++S+ I+ LE  +  +L  R  RGLT T+ G + +
Sbjct: 7   METFVAVVEAGSFSAAARRLQIGQPAVSKSIAQLEEHLNARLLLRSTRGLTPTDAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   + +  +  ++ESS   SG+LR    +   +  +   L  FL  +P + ++++
Sbjct: 67  EHACLAIEEADRAEHSVRESSEGLSGRLRAGAPVTFARLHVIPALGAFLDQHPKLDVEIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D++ ID+  +  D A+R+ + +  S +  R++V+          Y +    P +  +L 
Sbjct: 127 MDDRPIDLLEEGIDVALRMGR-LDDSGMTARRVVSGRRLVVGTKKYFERHGVPRTPADLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246
           +H  I       +   D       D       +S     S    M+  VL   G+A+  +
Sbjct: 186 QHQAIVHA---MRSGGDSWAFGHADGTEAAVTVSSRVRVSAAEGMRAAVLAHMGLAVASE 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++      + ++  ++ D   P   V+  +P     T K +AF +FI
Sbjct: 243 WMFAPELADGSVQAVLSDWTLPGVDVWAVFPSGRMATTKARAFVSFI 289


>gi|299529506|ref|ZP_07042943.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298722369|gb|EFI63289.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 326

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 118/253 (46%), Gaps = 19/253 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR  +F  AA++L L+QS++SRQI  LE EVGI LF RH+R + LT  G++L 
Sbjct: 22  LRAFLAVARHLNFRAAADELALTQSAVSRQIQSLEDEVGIPLFLRHSRAVELTGAGAQLL 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    ++ T  +++++  + S  + I T        L   L+ F   YPDI I++ 
Sbjct: 82  HAVQPALESIDATVRQIRQTVGRKS--VAITTWASFAAMWLIPRLEAFQRAYPDIDIRID 139

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS---LIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +  +D+     D AIR    +  +S   L   +LV +     A+P  L++     S  
Sbjct: 140 TGDAVVDLETTDVDLAIRYSAGVADASAKALFGEELVLV-----ASPALLRSGPAVHSPA 194

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLG 238
           +  ++ LI  GD+    M    WL +  R         LQ   +L       I+Q  + G
Sbjct: 195 DAARYTLIETGDV--HRMPQLEWL-SWQRWFAANGCDQLQPPRWLYFNYAHQIVQAALAG 251

Query: 239 SGIALLPDYIVKD 251
            G+A+    +V D
Sbjct: 252 QGLAIARLPLVAD 264


>gi|153832285|ref|ZP_01984952.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148871596|gb|EDL70451.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 309

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 94/189 (49%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G  
Sbjct: 5   NDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I+
Sbjct: 65  FLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIELYPNVSIK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+     D AIR  +P  S+ ++            A+P Y+ +  E    ++
Sbjct: 125 LELSDSLTDMYTKPVDIAIRYGEPADSNLVVLALCGANERILCASPEYVASNPELTKPED 184

Query: 186 LDKHNLITF 194
           L  HN + +
Sbjct: 185 LHLHNCLCY 193


>gi|187930371|ref|YP_001900858.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187727261|gb|ACD28426.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 306

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 127/279 (45%), Gaps = 12/279 (4%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS + AA+ + +S+  IS+ +  LE  +  +L  R  R L+LTE G+     + E    +
Sbjct: 17  GSLSAAADAMGISRGVISKALVRLEARLQTRLLQRTTRRLSLTEAGAAFFEKSREGLALV 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           +  +  +     +  G LR++        LL   L  F   YP +QI L ++++  D+  
Sbjct: 77  DAAEQAVSALRDEARGTLRVSAPASFAVTLLAPLLGAFQARYPAVQIDLDMNDRYADLVA 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
              D AIR+   ++ SSL+ R+L       Y AP Y      P S ++L  HN + + + 
Sbjct: 137 GRIDVAIRI-GMLEDSSLVARRLANCAHAIYGAPSYFSKNGIPRSPEDLRDHNCLVYANY 195

Query: 198 IPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN-- 252
                  ++W+   A   R +     S L  NS L + +    G G++L P Y+V+D+  
Sbjct: 196 DGP----YDWVLTDADGQRHVAHVTGSMLANNS-LVLREAARSGLGVSLGPAYLVRDDIA 250

Query: 253 -PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              L  ++ D       ++  + + +    K++AF +F+
Sbjct: 251 AGRLQAVLTDYTAREVPLHAVFTQRVHLLPKVRAFVDFL 289


>gi|160876413|ref|YP_001555729.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160861935|gb|ABX50469.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315268603|gb|ADT95456.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 314

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 28/290 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT  G +
Sbjct: 5   EAAKVFVTIVERGSMISAANALDMSRSMVTRYLSEMEEWSGARLLHRSTRSLSLTPAGEQ 64

Query: 66  L----HRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +    HR+      +L      +  +SV  P G LRI+ +  L   +L   ++++L  YP
Sbjct: 65  VLDYCHRLL-----ELANEVPAVSHASVAIPRGLLRISCSQFLAHQILAPVVRQYLASYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              + + + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      
Sbjct: 120 QASVNIHVSSQTVDLVAERIDLAIRITNELD-PNLIARRLGECESVVCAAPSYLAARAAV 178

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VN 226
           +  ++L +HN +T   FGD++ +  +          P  +P+++  Q            N
Sbjct: 179 VHPEDLTQHNCLTYSYFGDVMWRFYQADVAAKQAQAPNSDPKLNQGQAFNVPVNGNFSAN 238

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
             + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y
Sbjct: 239 DSMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVY 288


>gi|28901542|ref|NP_801197.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308094877|ref|ZP_05892735.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308095078|ref|ZP_05903243.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308125488|ref|ZP_05775963.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|28810089|dbj|BAC63030.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308089493|gb|EFO39188.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308091979|gb|EFO41674.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308111959|gb|EFO49499.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 318

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 126/291 (43%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R + LTE   +  
Sbjct: 7   LRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTEAVRRYA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +L   +  L+  +   SG L+I   +  G+  ++  LKEF   YP I I + 
Sbjct: 67  NTARFVLDELAACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPSITIDIH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+  +DI     D +IR    +Q S LI R+L  I      +  YL     P      +
Sbjct: 127 YDDAYVDIIEQGIDVSIR-SGVVQDSQLIVRQLSPIDFIICGSQDYLTRHGVPSGPDAFN 185

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+ + F     G L+P  M + +  +  +     P  + + VN   S+ + C  G G+ 
Sbjct: 186 DHSWVRFRFKQTGKLLPIRMPEPDGTSEYN-----PERNFI-VNDGESMAELCAEGLGLT 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P +I +D      LV I   +      VY  Y        +++ F +FI
Sbjct: 240 QIPHFIARDWLKVGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFI 290


>gi|83950473|ref|ZP_00959206.1| hypothetical protein ISM_05225 [Roseovarius nubinhibens ISM]
 gi|83838372|gb|EAP77668.1| hypothetical protein ISM_05225 [Roseovarius nubinhibens ISM]
          Length = 301

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 135/301 (44%), Gaps = 19/301 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LR+F   A   + + A   L L+ +  S +++ LE  +G +L +R  R ++L+ +
Sbjct: 1   MDTDALRLFVRAADLLNISAAGRDLGLAPAVASARLAKLEAALGAELLHRTTRKVSLSLE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+       E+  + E  +  L    ++ +G LR A      Q  +   L EFL  YP +
Sbjct: 61  GADFLPFAREILAQEEAARAALGSGGLQAAGTLRFAAPSSFAQLYIVPLLPEFLDQYPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L +   D      D A+R   P+Q SSL  RKL        AAP Y+     P +
Sbjct: 121 RLDLRLSDSPFDAIEGSFDLALR-NSPLQDSSLKGRKLAEDRRILCAAPSYIATHGAPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQV--NSYLSIMQYCV 236
            ++L  H LI F D  P+ +        + +  G+    P +S  QV  +  LS     V
Sbjct: 180 PEDLADHRLIAFRDQGPRPL--------LHKDGGQSSYHPALSKGQVIIDDGLSQKLLTV 231

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G+GI+L   + V     +  L R++ D  +     ++  YP +   + K++ F +F+  
Sbjct: 232 QGAGISLNSLWSVHAELGSGALTRVLPDYELDDQAKLWLVYPSSHVLSPKVRVFMDFLIG 291

Query: 293 K 293
           K
Sbjct: 292 K 292


>gi|158422935|ref|YP_001524227.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
 gi|158329824|dbj|BAF87309.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
          Length = 305

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 108/253 (42%), Gaps = 19/253 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V R+GSF+ AA +  ++ S+I RQI  LE ++G+ LF R  R LTLT+ G +LH
Sbjct: 9   LATFVDVVRAGSFSGAARRRAVTPSAIVRQIDALERDLGVSLFIRSTRALTLTDAGQRLH 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L  T  E+       +G LRIA     G+  +   +      +P + ++L 
Sbjct: 69  ERAVRHLDDLADTHAEIAAFEGSVTGTLRIACFPTFGKRYVLPVVVGLQAKHPALLVELD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D   +  D  IR+   +  S+LI  KL  +     A+P YL     P S  +L 
Sbjct: 129 LTERLADPVAERLDVVIRM-GALTDSTLIATKLAPLARLLVASPAYLARAGTPTSAADLS 187

Query: 188 KHNLIT---FGDLIP-----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            H LI      DL+       C   F    TV           L+ + + +       G 
Sbjct: 188 SHRLIDKLHGADLLGWRDVLGCPAGFGGNGTV----------ALRSDDFEAQRAAAEAGL 237

Query: 240 GIALLPDYIVKDN 252
           GIA L  ++V  +
Sbjct: 238 GIAFLSSWVVGPD 250


>gi|107026998|ref|YP_624509.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691805|ref|YP_837338.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896372|gb|ABF79536.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649805|gb|ABK10445.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 334

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +    SFT AA+ L +S+++ +R +  LE  +G+ L  R  R L  T +G   +
Sbjct: 8   MRIFTRIVEMNSFTRAAQALGISRATATRTVQELEAALGMPLLVRTTRALRPTPEGDAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   ++  +  ++ +++ PSG LR+     +   ++   L EF   +PD+++ L 
Sbjct: 68  RRCVSITADVDELEASIRGAALHPSGPLRVELPASVASTIVLPALGEFHARHPDLELTLA 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  +  D   D  DC+IRL   +  SSL+ R+L ++     A+P YL     P +  +L 
Sbjct: 128 VAGRAGDRIGDAIDCSIRL-GALPDSSLVARRLGSLERVTCASPAYLDRFGVPRTPDDLG 186

Query: 188 KHNLI 192
            H  +
Sbjct: 187 AHRAV 191


>gi|194289613|ref|YP_002005520.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223448|emb|CAQ69453.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 315

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 137/297 (46%), Gaps = 19/297 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ A+    + +S +SR+I+ LE ++G++L  R  R + +T  G
Sbjct: 3   DLNDLSLFAQVVEHGSFSAASRATGVPKSRLSRRIAQLERDLGVQLLRRTTRQVRVTPLG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     + ++ E  +  ++++  +P G LR++  I + Q LL   +  F+   P ++
Sbjct: 63  ESFYERCRAMLNEAEAAREVIEQAREQPGGTLRVSCPIAIAQILLAPAIGHFMRANPAVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   N+ +D+  +  D A+R+R+ ++ SSL  R      +   A+P  L +   P + 
Sbjct: 123 IELETTNRRVDVIGEGFDLALRVREVMEDSSLAVRTFGESELMLVASPSLLDSIGRPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCV 236
           Q LD    +       +   D   + T+    G       +PR   L  + +  + +  +
Sbjct: 183 QALDGMPGVG------QQPHDGKHVWTLRCKTGDSIQIAYDPR---LVTDEFALLREAAI 233

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+A+LP    +   ++  L  ++     P  T++  +P     T   + F +F+
Sbjct: 234 AGVGVAMLPRMFCREALESGELELVLPQYDMPVGTLHAVFPSRKGVTPATRRFLDFL 290


>gi|209543915|ref|YP_002276144.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531592|gb|ACI51529.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 298

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 1/186 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D++R+   + R GS + AA  L L+ S +S +++ LE  +G +L  R  R  TLTE G
Sbjct: 3   DADEMRIVVEIVRQGSLSAAARHLGLAPSVVSDRLARLEQRLGTRLLVRTTRRQTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    +  +  ++E+   P G LRI   +  G+  L   +  F+  +PDI+
Sbjct: 63  RIYLDEATAILAATDAMETRVRETVNAPGGMLRITAPMPFGRVRLAPFVAGFISRHPDIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L+++ +DI  +  D AIR   P+  ++L  R+L+       A+P YL     P + 
Sbjct: 123 IHLTLEDRMVDIVGEGYDIAIRA-APVVDTALTGRRLMESRRVLVASPAYLSRHGRPETP 181

Query: 184 QELDKH 189
            +L +H
Sbjct: 182 ADLARH 187


>gi|209551358|ref|YP_002283275.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537114|gb|ACI57049.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 300

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 126/288 (43%), Gaps = 16/288 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR+GS T AA +L L+QS++SRQ+S LE ++G++LF R  + + LT  G    
Sbjct: 14  LAAFEAVARTGSVTAAARELDLTQSAVSRQVSALEEQLGVELFLRERQTMRLTPAGDSYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E   ++ +  + L+ +     G L +A     G   L   L  FL   P + I L+
Sbjct: 74  REIREALRRISSASLNLRAN--PHGGTLNLAILPTFGTRWLAPRLGRFLAANPGVTINLV 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCREPLSIQE 185
                 D  +D  D AI    P    + +   L++       +P +LK      P  +  
Sbjct: 132 TRLSPFDFRLDSIDAAIHFGHPHWPGAELA-FLMSERTVPACSPDFLKRYTISGPQDLLS 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +   +L T     P   E   W A     +    +  +  + + +  Q  + G GIALLP
Sbjct: 191 VPLLHLTT----RPDAWE--QWFA--GNGVSFESVHGMLFDQFATAAQAAIAGLGIALLP 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +++++     +LV  ++  +      Y  +P    +   L AFR++I
Sbjct: 243 TFLMQEELRRGDLVAAVDREMESRERYYLAFPPERADYAPLAAFRDWI 290


>gi|94312803|ref|YP_586012.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
 gi|93356655|gb|ABF10743.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
          Length = 307

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 12/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A +GSF+ AA +L L+ ++IS+ ++ LE  +G++LF R  R LTLT  G +  
Sbjct: 7   LESFIQSAETGSFSAAARRLGLTPAAISKNVARLENHLGLRLFQRSTRRLTLTMGGEQFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S+ +  L        +   KP+G LR++  +  G+  L   L EFL  YP I     
Sbjct: 67  QQVSDPFSTLRDAFASAAQEDGKPAGVLRVSMGVAFGREYLVPLLGEFLARYPGIVPDWH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +N+ +D+     D AI     + +  ++ R+L   ++   A+P Y+K+   P    +L 
Sbjct: 127 FENRTVDLIAGGFDAAIGGGIEL-TEGVVARELARTYVVVAASPAYMKDRAMPRHPSDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL----SIMQYCVLGSGIAL 243
             + I         +  +N    +   IGE  ++ ++    L    ++    + G GIAL
Sbjct: 186 GFDGIVRRSASTGRLRHWN----LRNQIGEQALAEMRTRVILDDPEAMAHAAMSGLGIAL 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP        ++  LVR++      +  +   YP       K + F +FI
Sbjct: 242 LPMPHAAPWLESGALVRLLPGWYADNGPIVLYYPNRKLLPPKTRVFIDFI 291


>gi|325919076|ref|ZP_08181136.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325550460|gb|EGD21254.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 297

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 126/291 (43%), Gaps = 17/291 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L  F  VA   SF  AA +L L+ SS+S  IS LE  +G++L +R  R ++LTE G 
Sbjct: 6   FNDLAAFTSVAVHRSFRRAATELGLAPSSLSHLISALERNLGVRLLHRTTRSVSLTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L+         +E    EL      P+G +RI     + + LLQ  + E L  YP + +
Sbjct: 66  RLYAKLVPALQDVEQALSELDAFRSGPTGTVRINAPEVVVRLLLQQVVPEVLARYPALSV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+ + + +DI     D  IRL + +    +           A AAP YL+    P + +
Sbjct: 126 DLVSEGRLVDIVAAGFDAGIRLSESVPQDMIAVPFGGQTRFIAVAAPAYLQRAGSPDTPE 185

Query: 185 ELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +L +H  I      G L     E       +D P        L ++  L + +    G G
Sbjct: 186 DLHRHACIRHRMPSGRLYRWEFERRGQEVVIDVP------GRLTLDQILMMSEAAEAGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           IA +P++          LVR++E      P   +Y  YP   +    L+AF
Sbjct: 240 IAYVPEHAAMPALARGTLVRVLEQWCPAIPGLVLY--YPGHRQIPPGLRAF 288


>gi|300691178|ref|YP_003752173.1| transcriptional regulator (lysR family) [Ralstonia solanacearum
           PSI07]
 gi|299078238|emb|CBJ50885.1| putative transcriptional regulator (LysR family) [Ralstonia
           solanacearum PSI07]
          Length = 310

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 139/299 (46%), Gaps = 15/299 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++AR GS   AA +L L+  + ++++S +E+ +G++L  R  R ++LT +G   
Sbjct: 8   ELEFFTLIARHGSLAAAARELDLTPPAATKRLSQMESRLGVRLVNRTTRSISLTNEGETY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L   +  +  S  +P G LR+  T+  G+  +   + EF   Y  +++QL
Sbjct: 68  LAYAQRILADLREMESVVASSGSEPRGLLRVNATLGFGRTTIAPLVSEFAKRYAQVEVQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ ID+     D AIR    +    L  R++++      A+P YL+    P S+ +L
Sbjct: 128 EVTDRPIDLVESGVDLAIRF-GTLPDKRLSARRIMSNRRFLCASPVYLEKFGTPKSLSDL 186

Query: 187 DKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243
             H  I     I +  +D +  W    D      +++  L  N    ++ + + G GI +
Sbjct: 187 HHHRCI-----IHRQNDDTHAIWRFEHDGHHESVKVAGALSSNDGDIVLGWALDGHGILI 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARD 296
             ++ +    ++  L  ++     PS  ++  YP+    T + +AF +F+   F + RD
Sbjct: 242 RSEWDLAKYLESGRLRVVLPQFKLPSADLFVYYPQRRNQTARARAFIDFLVEKFQRLRD 300


>gi|227328971|ref|ZP_03832995.1| transcriptional regulator protein [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 214

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 89/191 (46%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+    VF  VA  GSFT AA +L LSQS++S  +  LE  +  +L  R  R L+LT+ G
Sbjct: 5   DFSDFAVFIAVAEEGSFTRAAAKLGLSQSALSYTVRMLEQRLETRLLSRTTRSLSLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       +  +      L     KP+G +RI T     + +L   L  FL  YPDI 
Sbjct: 65  ERLLHALKPAFEHINHEIAALSSRQGKPAGTIRITTFRHAARTVLLPALTPFLHDYPDIV 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ ++    DI     D  IRL + +Q   +  R    I M    +  Y    + P + 
Sbjct: 125 VEISVNEGLTDIVAGRFDAGIRLGEQVQKDMIAVRISPDIRMAVVGSASYFAARKVPNTP 184

Query: 184 QELDKHNLITF 194
           +EL +H  +++
Sbjct: 185 RELSEHRCVSY 195


>gi|332999820|gb|EGK19404.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-272]
 gi|333015688|gb|EGK35027.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-227]
          Length = 310

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 134/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVVLTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 71  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P  +QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCAAPEYLQKYPQPQLLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 190 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEFL 292


>gi|239503567|ref|ZP_04662877.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB900]
          Length = 306

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 139/299 (46%), Gaps = 33/299 (11%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +   GSF+ AA+QL++ +++ S  I  LE  +  +L  R  R +  +  G 
Sbjct: 4   FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELENNLQCRLLERTTRHVRPSLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPDI++
Sbjct: 64  AFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P   +
Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGTPEQPE 182

Query: 185 ELDKHNLITFGD-----------LIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLS 230
           +L  H  + F             ++    +D+   +W+A  D             N  LS
Sbjct: 183 DLLSHYCVNFFSTSGGRNYPFELMVNGKKQDYFLKSWIAVNDAE-----------NYVLS 231

Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +Q    G+G+  +P Y V +   N  LV+++ +   P  +V   YP+  + + +++ F
Sbjct: 232 ALQ----GAGLIQVPHYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVF 286


>gi|116695872|ref|YP_841448.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530371|emb|CAJ96718.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 309

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 128/286 (44%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA + SF  AA QL ++ S +S ++  LE  +   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVADTLSFAEAARQLGVTNSVVSHRVQQLEKYINAPLFHRSTRHVRLSEVGETYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  ++V   L     ++++    P+G+LRI              L  F   YPDI++ ++
Sbjct: 67  RQCADVVANLADLTDQMRDLRATPAGRLRIQVLPGFAIGHFADILAGFSQQYPDIELDVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ ID   +  D A ++  P Q+ SLI R+L T+      AP +++   +P    +L 
Sbjct: 127 VNDRVIDPIEEGFDVAFQIFAP-QNDSLIARRLFTLRRIFCVAPEFIERWGKPERPADLI 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              +  +     +    F+  A        PR   ++ NS   +  Y V G+ +  LP  
Sbjct: 186 CSKVALYSAYPTRNKWTFSRDAESVEIDLAPR---MRTNSVHLLRDYAVSGAAVVCLPTL 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  ++     LV ++ D    SF     YP   +   K++   +++
Sbjct: 243 VASEDLLAGRLVPVLHDYALSSFEFAAVYPATQRQALKVRVLVDYL 288


>gi|116691600|ref|YP_837133.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116649600|gb|ABK10240.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 296

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 128/300 (42%), Gaps = 23/300 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+ 
Sbjct: 12  NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                    H +     +L    VK    L I+TT       L   L +F   +PD  ++
Sbjct: 72  YFSDVQRALHAIADATDKL----VKRRAALTISTTPSFASKWLIPRLAQFTEAHPDYDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP--LSI 183
           +I D +      D  D AIR  KP     L    L  + + A  +P  L     P  L+ 
Sbjct: 128 VIADPQIATFRHDGVDLAIRYGKPPFGKHLATHALFPLDVCAVCSPSVLSPPAAPRALAG 187

Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           Q L  D H      DL P+      +LA +  P+       L+ N     +   V G GI
Sbjct: 188 QVLLHDAH------DLWPE------FLAAMPAPVDVDPHKGLRFNQTSLAIDAAVAGQGI 235

Query: 242 ALLPDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           AL  + +V+ +    R+ +  D   P S   Y  YP   ++   +   R ++   A D +
Sbjct: 236 ALATEPLVERDIAAGRLCKPFDFAFPLSMGFYLVYPAERRDDDAIAVMREWMIQAASDGR 295


>gi|257487827|ref|ZP_05641868.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 230

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 97/190 (51%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTPDGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L+  +     +   P G LR+   + LG+ ++   L EF   YP I++
Sbjct: 64  AYYQRCVSLLADLDDAEASFSAAGAVPKGLLRVDLPVSLGRMIVIPALPEFARRYPQIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL++ 
Sbjct: 124 EIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASRDYLQRYGTPLNLP 182

Query: 185 ELDKHNLITF 194
           +L +H +I +
Sbjct: 183 DLAQHQVIEY 192


>gi|254503624|ref|ZP_05115775.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222439695|gb|EEE46374.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 305

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 129/295 (43%), Gaps = 10/295 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  V   GS T     L ++ +  S++I  LE  +G +LF R  R LT TE G  
Sbjct: 5   ESLRVFTRVVELGSITAGGRDLRMTPAVASKRIKELEKHLGARLFNRTTRSLTPTEVGKV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +    +   +  +   S  P G LRI   +  G+ ++   + +F+  +P  ++ 
Sbjct: 65  FYEHAVKALESINDAEAAVASFSDMPRGVLRITAPLGAGRRIISPLVPKFVEQFPATEVH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +DI  D  D A  +  P + S+L  RK+        AAP YL+    P S  +
Sbjct: 125 MRLSDRKVDIMSDGLDVAFFIGTP-EDSNLKLRKIADCPRVLCAAPGYLEKHGTPQSPDD 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L   +HN +      P   E +  L T D P          V+    +  + + G GI  
Sbjct: 184 LLTCEHNCLLL--RYPHSPEYYWVLETKDGPRKLQVSGKFDVDHSDVLTDWAISGYGIVN 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFIFLKA 294
            P + V ++    +LV I+ D   P  T++ C YP       K++ F +F+   A
Sbjct: 242 KPRFDVAEHLRKGDLVEILIDTPPPP-TIFGCLYPHRRLQDPKIRHFVDFVIKHA 295


>gi|154251278|ref|YP_001412102.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gi|154155228|gb|ABS62445.1| transcriptional regulator, LysR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 309

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA QL L+Q ++ R +  LE  +G+ LF R   GL  TE   
Sbjct: 8   WELYRSFLAVVREGSLSGAARQLGLTQPTVGRHVDALEEALGVGLFTRSQGGLAPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    E  +      + +  G +RI  +  +G  +L   L  F   +P I I
Sbjct: 68  SLVPHAEAMSMAAEALRRAASGEAEEDRGTVRITASEMIGTEVLPSILAAFCEKHPRIAI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L N+  D+    AD AIR+ +P Q +SL+ +K  TI +  +A  + ++    P S++
Sbjct: 128 ELVLSNRTDDLIRRDADIAIRMVRPTQ-TSLVAKKCGTIGLGLHAHKNLIQRFGMPQSVE 186

Query: 185 ELDKHNLITF 194
           +L ++ +I F
Sbjct: 187 DLTQYPIIGF 196


>gi|307129411|ref|YP_003881427.1| putative transcription regulator protein [Dickeya dadantii 3937]
 gi|306526940|gb|ADM96870.1| Probable transcription regulator protein [Dickeya dadantii 3937]
          Length = 300

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 127/272 (46%), Gaps = 5/272 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  + SF+ AAE+L L ++++S+ +  LE  +G++L  R  R + +T++G   +
Sbjct: 7   MRVFVRIVEAESFSRAAEKLGLPRATVSQTLKRLELRLGVRLLQRTTRQVQVTDEGMLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++  ++E T         +PSG++RI     L + ++  +L EF   YP I + L 
Sbjct: 67  QRCVQLLAEIEETDALFSRQRQQPSGRVRIDMPHSLARQVVIPSLPEFYRRYPQISLVLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  I++  +  DC +R  + +   SL+ R L ++     A+  Y      P +++ L 
Sbjct: 127 ANDSAINVMREGVDCVLRAWQ-VDDDSLVARSLPSLPQVTCASAAYCAEFGVPDTLEALM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +  L         ++    + I     S +++N   + +  C  G GI   P Y
Sbjct: 186 SHRMVGYFSLRTSHRYPLEFMQQ-GQIITRTLPSLVEINGADAYIAACQAGMGIIQAPRY 244

Query: 248 ---IVKDNPNLVRIMEDVITPSFTVYFCYPEA 276
               +  +  LV I+  +  P   +Y  YP  
Sbjct: 245 GLVPLLSSGELVEILPQLPPPDMPLYVMYPSG 276


>gi|167550666|ref|ZP_02344423.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|198242490|ref|YP_002214090.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937006|gb|ACH74339.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205324381|gb|EDZ12220.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 307

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 69  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 189 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 247

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 248 DVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297


>gi|145598966|ref|YP_001163042.1| DNA-binding transcriptional activator GcvA [Yersinia pestis
           Pestoides F]
 gi|145210662|gb|ABP40069.1| glycine cleavage system transcriptional activator [Yersinia pestis
           Pestoides F]
          Length = 305

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 128/295 (43%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRAFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    S L    L    +    AP  L          +
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWSGLRTECLYAEFLLPVCAPSLLTGENGLKVPSD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
           L  H L+             +WLA   R +G P+I+  Q    +    ++Q  V G GIA
Sbjct: 186 LANHTLL-------HDTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIA 237

Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+ + + +      R++    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 238 LVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|152986508|ref|YP_001345452.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961666|gb|ABR83691.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 306

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 1/186 (0%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  V  SGS T AAE+L +S++ +SR ++ LE  VG +L +R  R L+LT+ G++L  
Sbjct: 8   RVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWVGARLLHRSTRRLSLTDAGAELLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    ++ Q   Q     P G LRI +++   Q  L      F+  +P   I L +
Sbjct: 68  QCREMLAVADSMQATGQTRRDSPRGTLRITSSLSFAQAWLTRAAAAFVERFPGTAIDLQV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ I++  +  D A+R+   +   +LI R+L        AAP YL+    P   ++L  
Sbjct: 128 NSQVINLVEERIDLALRITNQLD-PNLIARRLGECRSVICAAPDYLRRHGTPRRPEDLAL 186

Query: 189 HNLITF 194
           HN +T+
Sbjct: 187 HNCLTY 192


>gi|28870375|ref|NP_792994.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853622|gb|AAO56689.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 302

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 18/291 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SFDW+ LR F   A   S + AA++  +  +++SR+I+ LE  + +KL  R  R   LT+
Sbjct: 23  SFDWEDLRYFLTFAAVKSLSGAAKKSGVEHATVSRRIASLEKSLNVKLVDRRKRLYELTD 82

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G KL  +   +  + E        +   P+ ++ I+    +    L   L  F  ++P 
Sbjct: 83  DGRKLAVIGRRIEEQAEAIGRLAVAAQDAPATEVTISAPSSVAIEKLVPQLGAFRAMHPG 142

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+ D++   +S   +D  IR  +P++ + ++ R++ T     Y +  YL+      
Sbjct: 143 IVLRLLGDHQYSSLSSCQSDLCIRFSRPVE-NGIVARRIGTASFSFYCSNFYLE------ 195

Query: 182 SIQELDKH-NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             Q L +H   I +   +    ++      + R I   R   L+  +    ++    G G
Sbjct: 196 --QRLAEHYEFIGYDSEVMTASQN-----VLLRTIVGARPFVLEAKTVELQIRAAEAGVG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           IALLPD+ V+ NP L R+  ++  P    V+    E L++   ++A  N++
Sbjct: 249 IALLPDFAVEQNPRLCRL--ELSRPLEVDVWLGVHEDLRSVASIQAAMNYV 297


>gi|332678600|gb|AEE87729.1| Transcriptional regulator [Francisella cf. novicida Fx1]
          Length = 296

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLTEQ 62
           ++D + +F  +   G+FT  A+QL++SQS++SR+I  LE  +  KL  R++RG + +T +
Sbjct: 2   NFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEVTTE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+   S +  +   T  +   +S +  G LR+        NL+   L  F   YP++
Sbjct: 62  GQSLYNNFSYIEEQAVVTFQKWINNSKQIKGILRVGVPKLFFDNLVAPKLDTFYTRYPNV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+        +D+  D  D AI  +KP  ++  I + L+      YA+  Y++    P +
Sbjct: 122 QLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTI-KTLLKAKNKLYASKKYIQEKGVPET 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS 221
           I+EL+ H+++ F D   KC       + +D    E  IS
Sbjct: 181 IKELENHSIVGFIDN-DKCQNALVGFSELDNSSLEVNIS 218


>gi|260549546|ref|ZP_05823764.1| LysR-family transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407339|gb|EEX00814.1| LysR-family transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 303

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 1/193 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V    SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+
Sbjct: 4   ALDFNTLKVFIAVVEKESFVGASKLLEMPTSNVSRCISQLEEKLDLQLIERSTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + EF   YPD
Sbjct: 64  AGQLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVIAEFACQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  + +    +   D  D AI + R  + +S  I R LVTI     AAP  ++    P
Sbjct: 124 LEISCVTNLSGFESLRDDLDLAIIISRGQMDNSDYIARHLVTIPCTIVAAPSLIQRYGTP 183

Query: 181 LSIQELDKHNLIT 193
             I++ ++   IT
Sbjct: 184 TRIEQFEELPCIT 196


>gi|62178706|ref|YP_215123.1| lysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|205351478|ref|YP_002225279.1| lysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855652|ref|YP_002242303.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224581982|ref|YP_002635780.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62126339|gb|AAX64042.1| putative lysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|205271259|emb|CAR36047.1| putative lysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|206707455|emb|CAR31729.1| putative lysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224466509|gb|ACN44339.1| putative LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322713159|gb|EFZ04730.1| lysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|326626505|gb|EGE32848.1| lysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 313

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 15  LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 75  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 135 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 195 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 253

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 254 DVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 303


>gi|330503049|ref|YP_004379918.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328917335|gb|AEB58166.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 316

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 135/309 (43%), Gaps = 38/309 (12%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A +GSF  AA +L LS +++ + ++ LE+ +G++LF R  R LTLTE G +     
Sbjct: 10  FVRTAEAGSFAEAARRLGLSPAAVGKNVARLESSLGVRLFLRSTRRLTLTEAGERFLAEV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S     ++     L  S  +P+G L+++  +  G++ +  +L +FL  YP I      DN
Sbjct: 70  SGGLANIQGAVANLASSQGQPAGTLKVSMGVAFGRDYILPHLTDFLARYPAITPDWHFDN 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+     D AI     +   + I R+L   H    AAP YL         ++L +H+
Sbjct: 130 RAVDLIGGGFDAAIGGGFELPPGA-IARQLAPAHRVLLAAPVYLAKHAPITRPEDLTQHD 188

Query: 191 LITFGDLIPKCMEDFNW-LATVD-----------RPIGEPRISC--------LQVNSYLS 230
            I      P+     +W L T D             + +P  +C        + + S + 
Sbjct: 189 GILIRS--PQTGRVRSWPLRTRDDQQATLELKQRMTMNDPEAACHAALQGLGITLVSTVH 246

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + Y   GS   +LPD+ V              T S ++YF   + L    K + F +FI
Sbjct: 247 ALPYLQRGSMQWVLPDWYVD-------------TGSLSLYFSAQKLLP--AKTRVFIDFI 291

Query: 291 FLKARDWKF 299
             + R+ ++
Sbjct: 292 VERFREHRW 300


>gi|149927560|ref|ZP_01915813.1| LysR-family transcriptional regulator [Limnobacter sp. MED105]
 gi|149823614|gb|EDM82842.1| LysR-family transcriptional regulator [Limnobacter sp. MED105]
          Length = 304

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 13/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L  F  V     F+ AA  L + +S ISR+I+ LE  +  +L YR  R L +TE 
Sbjct: 1   MDLNDLYYFAKVVEHQGFSAAARALGIPKSKISRRIAELEKRLNTQLLYRSTRKLHITEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +  + E+ Q  ++ +  +P G +R+   I L    +   L EFL+ +P +
Sbjct: 61  GKTYYQHCKAMLIEAESAQEVIEHNHAEPRGLIRMTCPIALLHAHIGDMLAEFLVKHPQV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + +   N+ +D+  +  D AIR+R  P+ SS L+ + L    +   A+P  +     P 
Sbjct: 121 TVHMEASNRRVDVVAEGVDLAIRVRPLPLDSSDLVLKVLSDRGLCLVASPCLINKMGAPK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVL 237
             ++L     +  G    +    F W  T     GE    P    L     +++    + 
Sbjct: 181 HPKDLIHWPSLGLGQTQGQVQTAFEWCLT--HASGERIVIPHSPRLVTTDMVALRASAMA 238

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  LP+ +V     N  LV+++ D       ++  +P      G L A R  I
Sbjct: 239 GVGVVQLPNLMVPKQVANGELVKLLPDWSPRREIIHVVFP---SRRGMLPAVRALI 291


>gi|221067396|ref|ZP_03543501.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220712419|gb|EED67787.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 308

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 142/302 (47%), Gaps = 27/302 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA SG F+ AA +L ++ SS++R I GLE  +G  L  R  R +TLT+ G+   
Sbjct: 7   LRAFLDVAESGGFSKAARRLGVATSSVTRLIDGLEESLGTALLTRTTRRVTLTDAGAAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S V   LE     + ++  +  G LR++      +  L  ++  FL   P + + L+
Sbjct: 67  EQVSRVLSDLEEADGSVSDTGTEAVGPLRVSLPATFARLCLAPHIASFLRENPRVSLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D A+R+  P     LI R L     +  A+  YL+    PL  +EL 
Sbjct: 127 LSDAYVDLVSERIDVAVRIGTPALQPQLIVRNLAEHRRYVVASHAYLQRHGTPLIPEELS 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLS-----IMQYCVL-G 238
           KH          +CM  F++     R     R   LQ   V   L+     I++  VL G
Sbjct: 187 KH----------ECMR-FSYQPGPQRWSFRHRDGQLQHVEVQGRLAVNNSDILREAVLDG 235

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDV-ITP---SFTVYFCYPEALKNTGKLKAFRNFIF 291
            GI+LL +++++++     L R+ ED  I P   S  VY  Y    + + K++ F +F+ 
Sbjct: 236 GGISLLAEWLIREDVRVGRLRRLFEDYEINPQEHSVCVYAAYLPNRRYSKKVQVFLDFLQ 295

Query: 292 LK 293
           ++
Sbjct: 296 MQ 297


>gi|120612464|ref|YP_972142.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120590928|gb|ABM34368.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 314

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 126/261 (48%), Gaps = 8/261 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +    ++   GSFT AA +L +S+S++S ++S LE   G+ L  R  R + LT+ G 
Sbjct: 10  WSHVHWLGILDAEGSFTGAAHRLGVSKSAVSHRVSELEQAAGVALVRRTTRTVRLTDAGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L   T E +  +E +   +++ + +P+G LR+   +  G+  +   +  FL  YP +++
Sbjct: 70  HLVDSTRESFASIERSFANIRDLAQEPNGVLRVTVPVAFGRQHIVPRIPGFLRQYPQVRV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +    +S+D  D AIR  + +  +  +   L        A+  YL+ C  P +  
Sbjct: 130 ELELSDGIRSLSLDGFDLAIRHVESVPDTH-VAWPLCPTETVLVASRAYLEACGVPGTPH 188

Query: 185 ELDKHNLITF--GDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L +HN + +  G  +P    E     A   R +  P       N+  ++    + G+GI
Sbjct: 189 DLARHNCLHYLRGASVPSWSFERTGHRADAPR-LSIPIAGTFAANNSEALRTLAIAGAGI 247

Query: 242 ALLPDYIVK---DNPNLVRIM 259
           A+LPD+ V     N  LVR++
Sbjct: 248 AMLPDFSVSGEIGNGELVRVL 268


>gi|212637013|ref|YP_002313538.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212558497|gb|ACJ30951.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 302

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 13/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F +VA   SFT A+ +L++  S++S+ +S LE+    +L YR  R + LT +G    
Sbjct: 15  MRSFVIVAERESFTEASRELNIVASAVSKHVSDLESHFSSQLLYRTTRAMHLTSEGEYYL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  ++++ +    E   + +G L I+            N  EF+  +PD++I  +
Sbjct: 75  EQFKEIIARIDSLENIASERLQQVAGNLTISAPQGSAALGYLHNTSEFIKRHPDVRISWL 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             N+ +++  +  D +IR+ + +  S+LI R+  +I +H  A+P Y+K    P   +EL 
Sbjct: 135 FLNRFVNMVEEGVDLSIRIGE-LADSNLIARQYTSIKVHFVASPDYIKLHGLPKHPKELS 193

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
           +H  +    L     +   W    +    E  I+    +Q N      ++   G GIA L
Sbjct: 194 QHQCV----LDSSNRQPGRW--RYNEAAKESTITVKGYVQANDGEVAARFAADGHGIAYL 247

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P ++++   D+  L  I+ED       V   +P        L+A   F+  K
Sbjct: 248 PSFLMQQYLDSGELCPILEDYEFDETPVSLVFPANRLMNPALRALIEFLIEK 299


>gi|330969845|gb|EGH69911.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 303

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 26/296 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW+ LR F + +   S + AA  L +  +++SR+I+ LE  + +KL  R  R   LT
Sbjct: 23  ICFDWEDLRYFVMFSTVSSLSGAARMLGVEHATVSRRIASLEKSLNVKLVDRRKRLYELT 82

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G ++  +  ++  + +        + V    ++ I+    +    L   L  F  ++P
Sbjct: 83  DEGRRVAAIGRQIEAQTQAVGRLAVAAQVVQGVEVTISAPPSVAVEKLVPQLGAFRAMHP 142

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L+ D++   +S   +D  IR  +P++ S ++ R++ T     Y A  YL+  R P
Sbjct: 143 GIVLRLLGDHQYSSLSSCQSDLCIRFSRPVE-SGIVARRIGTASFSFYCARFYLEQ-RPP 200

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--NWLATV--DRP-IGEPRISCLQVNSYLSIMQYC 235
                 + +  I + +   + M D    WL  +  DRP + E +   LQ+ +  +     
Sbjct: 201 ------EHYEFIAYDN---ELMSDSQNGWLRDIVGDRPFVLEAKTVELQIRAAET----- 246

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
             G GIALLP + V+DN  L R+  ++  P    V+    E L+    ++A  N++
Sbjct: 247 --GVGIALLPSFAVEDNNRLCRV--ELSAPLEVDVWLGVHEDLRAVASIQAAMNYV 298


>gi|289624194|ref|ZP_06457148.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647243|ref|ZP_06478586.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486161|ref|ZP_07004224.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159168|gb|EFI00226.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330868084|gb|EGH02793.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330985532|gb|EGH83635.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 306

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 130/287 (45%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F+++A+ GS    A +L ++  +IS+++S LE  +G +L  R  R ++LT +G    
Sbjct: 7   LSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEARLGTRLVNRTTRSMSLTAEGELYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +++  +  +  SS  P G +R+  ++  G+  +   L  F   YP++QIQL 
Sbjct: 67  SHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQLE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D++    D  IR    +  ++   RK+ +      A+P YL+    P  + EL 
Sbjct: 127 ISDHPLDLATHGFDLGIRF-GSLPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAELQ 185

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN I    +  P  +  F+             + C   N     + + + G GI L  +
Sbjct: 186 HHNCIFLRQNETPYGVWSFSNGGRTQNVKVHGALGC---NDGEVALNWALEGFGILLRAE 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +     +  L  ++ED       VY  YP+ L  + +++   +F+
Sbjct: 243 WDIARYVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRCLIDFL 289


>gi|313202357|ref|YP_004041015.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441673|gb|ADQ85779.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 315

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 4/194 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F   A+ GS + AA  L +S +  S  +  LE+E+G+ LF R  R L LT +G +L 
Sbjct: 15  LELFITTAQYGSLSAAARSLEISPAVASAALKRLESELGVLLFVRTTRSLRLTAEGERLL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  + ++L     EL        G+L ++   DLG+N++   L EF   +PD+ +++ 
Sbjct: 75  ARSQPLINELRDLADELVAGHSLIRGELSLSLPSDLGRNVILPWLDEFQQQHPDLHLRVQ 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186
           L ++  D+  +  D AIR  +P  SS  +   LVT +     AAP YL     P S  EL
Sbjct: 135 LSDRIADVMREPVDVAIRYGQPPDSSQ-VALPLVTDNRRVLCAAPQYLTTHSTPSSPAEL 193

Query: 187 DKHNLITF--GDLI 198
            +HN + F  GD +
Sbjct: 194 SRHNCLCFRVGDAL 207


>gi|71734169|ref|YP_273972.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554722|gb|AAZ33933.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 302

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 137/296 (46%), Gaps = 30/296 (10%)

Query: 6   DKLRVFYVVAR---SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L+     AR   SGS + AA+    S +S+ R ++ LE+ +G++L  R  R + LT++
Sbjct: 2   DRLKAMANFARIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  R T  +    +  +  L        G LR+   ++ GQ  +   +  FL  + DI
Sbjct: 62  GEEYLRWTRRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLSEHQDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L+++ + +  +  D A+R+   +  S+++ R++    + + A+P YL+      +
Sbjct: 122 NVELNLNDQIVPLLDERLDLALRIGH-LPDSAMVARRIGATRLVSCASPGYLRTAPLLDT 180

Query: 183 IQELDKHNLIT---------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            + L +H  IT         F     + ++D             PR+ C QV +      
Sbjct: 181 PKSLPEHACITLASHGRQWYFRHQGKELIQDIT-----------PRLVCNQVRAA---SL 226

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            C+ G G+  L  Y V D   +  L+R++ +  T    +   YP AL+ + ++KAF
Sbjct: 227 ACIQGLGVTRLIHYQVADELADGRLIRVLNNFETADLPIQLVYPHALQLSPRVKAF 282


>gi|126464318|ref|YP_001045431.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|126106129|gb|ABN78659.1| transcriptional regulator [Rhodobacter sphaeroides ATCC 17029]
          Length = 307

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 127/282 (45%), Gaps = 23/282 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R F  VA  GS +  A  + + QSS++R ++ LE  VG+ L  R  R +TLTE+G +
Sbjct: 9   DRMRTFVRVAERGSLSAVARDMRIGQSSVTRHLNELERAVGVALLSRTTRRVTLTEEGHR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +     E + +    SG +R++ T  LG   +   +  F   +P+I++ 
Sbjct: 69  YYLQAVQILRLVAEASDEARRAGAASSGLVRLSCTAALGVRHIGRLIHRFQDRHPEIEVD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ID+  +  D AIRL   +  S L  R L        A+P YL     P +  +
Sbjct: 129 LGLTDERIDLVREGVDLAIRL-GTLGDSRLKLRSLGRSRRILVASPGYLDRRGRPQTPAD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
           L++H  I            FN       T++ P G  R+      L+V+  L+  +    
Sbjct: 188 LERHEGIRM----------FNIAGSERLTLEGPDGTTRVVPFGGRLRVDHGLAAREAYRA 237

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTV-YFCYPE 275
           G G+     ++V D   +  L RI+ D   PS  +     PE
Sbjct: 238 GRGLGPAHLWLVDDLLTDGQLERILPDHALPSVPLSLLIAPE 279


>gi|170751151|ref|YP_001757411.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657673|gb|ACB26728.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 286

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 121/281 (43%), Gaps = 31/281 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  +R+F  +ARSG+   AA  L  S  ++ R++  LE  +G  LF R A GL LTE+
Sbjct: 1   MEWSDVRIFLAIARSGTLGGAARSLQTSHPTVGRRLRALEQAIGHTLFQRTADGLVLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           G  +  +  ++       +  L  QE ++K  G LRI++    G  +L   L +F   YP
Sbjct: 61  GHGIIALAEQMEEGALAMERRLAGQEQNLK--GSLRISSADWFGAYVLPPILADFSRAYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA-----PHYLK 175
            + ++++   +  +++   AD A R+  P  ++ ++QR+L  +    Y A     P Y  
Sbjct: 119 HVDVEILTGTRLFNLAQREADLAFRI-VPFNTADVVQRRLFRLEYGVYIAEESPDPRYGD 177

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV---DRPIGEPRISCLQVNSYLSIM 232
                L   E    +             D  WL       RP+       L+ N+     
Sbjct: 178 GTGFRLITHETSTGHF-----------PDIAWLIETFPNARPV-------LRSNNRNVQG 219

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           + C  G GIA+LP  +    P + R+      P+  ++  Y
Sbjct: 220 RMCRQGVGIAVLPRVVGTQIPGIRRLDLPTQPPARDIWVGY 260


>gi|325168821|ref|YP_004280611.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064544|gb|ADY68233.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 296

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 133/299 (44%), Gaps = 18/299 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R+F  VA + SF   A Q+H+S  +++R ++ LE  +G +LF R  R + +TE G+
Sbjct: 4   WQAMRIFVKVAETESFADTARQMHMSAPAVTRSVAALEDIIGARLFVRTTRSVKMTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      ++   +   +     S   P+G L +  ++  GQ  +   +  FL  +P ++ 
Sbjct: 64  RYFEDCRKILSDIAEAEAAAGGSYATPTGTLSVTASVMFGQMYVLPVVTGFLDAFPTMKA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +  ++ ++I  +  D A+R+   +  S L   K+ ++      +P Y      P +  
Sbjct: 124 RTLFIDRPVNIVDEGIDVAVRIGH-LPDSGLSAIKVGSVRRVVCGSPAYFDRHGIPTTPS 182

Query: 185 ELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H +   T     P+     ++  T+D        + LQ N+  + +     G G+ 
Sbjct: 183 DLRDHRIAASTSAWASPEWRFSDDFRVTID--------AALQCNTNEAAITSAREGWGLT 234

Query: 243 LLPDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            + +Y +   P+L+      ++ +   P   ++  +PE      K++AF +    + R+
Sbjct: 235 RVLNYQI--GPDLMAGDLQIVLSEFEEPPLPIHIMHPEGRNAPAKVRAFVDMAVARLRE 291


>gi|255318048|ref|ZP_05359293.1| LysR substrate binding domain protein [Acinetobacter radioresistens
           SK82]
 gi|255304871|gb|EET84043.1| LysR substrate binding domain protein [Acinetobacter radioresistens
           SK82]
          Length = 302

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 137/283 (48%), Gaps = 23/283 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +++L+VF  +  SGS   A+EQL    S +SR +  LE+++ + L  R  R L+LT
Sbjct: 1   MKSTFEELQVFVSIVDSGSIVKASEQLGQLTSGLSRILQRLESKLNVTLLERTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G        ++ ++L   +  L +S  + SGK+RI +      +++   +++F+  YP
Sbjct: 61  QEGQLFLERARKIINELNDAEELLLKSDHEVSGKIRIDSATPFVLHVIAPLMQKFMQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I+L   ++ ID+     D AIR  + +  SSL  R L    ++  A+P YL+    P
Sbjct: 121 YIEIELNSHDQIIDLLEHRTDVAIRFGQ-LNDSSLHARLLTQSRLYIVASPAYLEQYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            +  EL +H LI F    PK +  +     N   T   PI        + ++  ++ Q  
Sbjct: 180 QTAGELLQHQLIGFSS--PKHLNTWPLKLGNEYFTATAPI--------RASNGETVRQLA 229

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVI----TPSFTVYF 271
           +L  GI  L +++V  +     LV + ED I     P   VY+
Sbjct: 230 LLHHGITCLSEFLVGQDLAQNRLVALFEDQIELHYQPIHAVYY 272


>gi|171315644|ref|ZP_02904878.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171099176|gb|EDT43949.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 290

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 23/291 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR  SFT AAEQL L+Q ++SRQI  LE   G  LF RHA+GLTLT +G +L 
Sbjct: 10  LQIFSTVARHRSFTRAAEQLCLTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V  E + +++   ++L       +  L++ T +      +   +  F   +PD+ +Q+ 
Sbjct: 70  PVVDESFARIDDISMKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQE 185
              +  +D S +  D A+ +      + +    L    +    AP   +    PL ++ +
Sbjct: 125 TAWQHVVDFSTEPFDAAV-VYGTSPGAGVFALPLFDERLTPVCAPELRQAV--PLDAVGD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---MQYCVLGSGIA 242
           L +H L+          +  +W A +D   GE  +   +  ++ ++       + G G+A
Sbjct: 182 LARHTLLH------PTRDHRDWRAWLDH-AGERAVDAERGPTFDTLDLATNAAMQGFGVA 234

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    +V D+ +   L R  + V+      +F YPE L +  K++AF ++I
Sbjct: 235 IGDVTLVDDDVSARRLERPFDTVLETGARYFFVYPENLGSQQKIRAFSDWI 285


>gi|109897454|ref|YP_660709.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109699735|gb|ABG39655.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 298

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 6/246 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  VAR  SFT  A+QL +S    S+ I  LE +    LF+R  R +TLTE G  
Sbjct: 5   EGMRTFIAVARQKSFTSGAKQLGISTKLASKYIGQLEKKHDALLFHRTTRSVTLTETGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  + +  +  +Q      SG +R+      G   L   L  FL  +PDI ++
Sbjct: 65  YFERCVPLLEQFDELEDVIQHRQSALSGTIRLTAPTAFGSTKLVDALAPFLKQHPDISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ + I  +  D AIR    +Q S+LI +KL+ + +  +A+P YL     P     
Sbjct: 125 LSLSDQRVAIIDEGVDVAIRFGD-LQDSTLIAKKLMNMRVVVFASPEYLAQKGAPSHPNA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ +    L    ++  NW    +       +      NS  ++ Q    G GI + 
Sbjct: 184 LATHHCL----LQKSQVDPLNWKFKENGLTFNVNVHGVFASNSPRAVTQMAAQGLGIGMG 239

Query: 245 PDYIVK 250
           P Y+ +
Sbjct: 240 PIYVTE 245


>gi|329997062|ref|ZP_08302689.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328539177|gb|EGF65208.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 327

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 6/275 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS + AA  L++  +++SR I  LE+ +G++L  R  R LTLT+ G         +  ++
Sbjct: 40  GSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTDAGVDYVAAARRILEEV 99

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E  + +      +P G+L I+     G+  +   + EF+  YP I+++L+L +++ D+  
Sbjct: 100 ENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPLIRVRLLLSDRNADLVS 159

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           D+ D A+R+   +  SS++  +L T+ + A A P  L    EP   ++L    +I     
Sbjct: 160 DHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQRPRDLAALPIIRIESP 218

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254
           +P     F      D+ I  P +  L V +  S      LG G+A L  Y   D   +  
Sbjct: 219 MPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGVARLLHYQALDGLRHGE 276

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L  ++E+V      V+  Y        KL+ F +F
Sbjct: 277 LRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDF 311


>gi|89072268|ref|ZP_01158847.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89051800|gb|EAR57252.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 305

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 135/296 (45%), Gaps = 12/296 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+V   VA   S T AA  L +  ++ S  +  +E  +G+++F R  R L L+  G +
Sbjct: 4   EDLQVILKVAEFRSITAAATNLDMRTATASAAVKRVEAYLGVEIFVRSTRHLRLSSAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E    LE  ++ +QE      G++RIA + DLG+NL+   L EFLL YP++ ++
Sbjct: 64  YLPQCEEALKMLEHAKVNMQEELGIIDGEIRIALSSDLGRNLVTPWLDEFLLQYPNVSLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + + +ID   D  D A+R   P    ++   K+  +     A+P YL     P    +
Sbjct: 124 SSISDSNIDFYRDSVDMALRYGSPTD-QNVYGFKICDVPRVVCASPSYLAEHNIPTHPSD 182

Query: 186 LDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
           L +HN + +   D++        WL + +    + ++   +  N    + ++CV G G+A
Sbjct: 183 LLEHNALFYQLYDVLQN-----EWLFSNEETTHKVKLKGNRASNDGDLVRRWCVAGKGVA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +     + D+     +V +M++  T    ++   P     T  ++  R+    K +
Sbjct: 238 IKSSLDMSDDLLAERVVSMMQEYKTTPTELWLVCPSRQSVTPTVRLLRDLFRNKTK 293


>gi|330962472|gb|EGH62732.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 315

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA++L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAAKRLAVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQHLLGYAESIESTLHMACEQVSGSSVALSGHIRMGCTEGFGSFFITPQLSHFLGSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +     
Sbjct: 131 ISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQEYLDSHAPIQ 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVLGS 239
              +L +H  I++ D +    E   +L+ +  P  +      Q+ S   I QY   + G 
Sbjct: 190 RKADLSEHVFISYVDDLAFSSE-LLYLSNL-LPNAQA-----QLRSTSVIAQYTAALQGR 242

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +A+LP ++   +P LV ++ED +  +   +    E L+   ++    ++I
Sbjct: 243 ALAILPCFLATQDPRLVPVLEDEVNITRQFWMYCREDLRKLKRITVLWDYI 293


>gi|330821642|ref|YP_004350504.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373637|gb|AEA64992.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 332

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 131/274 (47%), Gaps = 24/274 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F   AR  SFT A ++L+++QS++SRQ+  LE  + I+LF+RH R LTLTE+G  
Sbjct: 14  DFLRGFECAARHLSFTKAGQELNVTQSAVSRQVKALEERLQIELFHRHIRALTLTEEGRS 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   +     +E     L E   + +  + ++TT+      L   L  F + +PDI ++
Sbjct: 74  LYGTIAMALSDIEHAIDALSEGVAQRA--ISLSTTVSFAALWLIPRLGSFRMQHPDIDVR 131

Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  D+     D A+R   P      +  L + ++V +     A+   +   R P 
Sbjct: 132 VSATSEIEDLRRKRLDFAVRYIGPNMLVPDARVLFRERVVAVCSPGLASAQGMA-IRTP- 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRI---SCLQVNSYLSIMQYCV 236
              +L +H L+   D       ++ W A  T+ + +G PR+     L  + Y  ++Q  V
Sbjct: 190 --ADLGRHVLLHMHD----ARGEWPWYAWDTLLKALGVPRMKPAGGLTFSQYDQLVQAAV 243

Query: 237 LGSGIAL----LPDYIVKDNPNLVRIMEDVITPS 266
            G GIA+    L D +++    L+ +  D   PS
Sbjct: 244 DGHGIAIGRRPLIDGLIRQG-RLIELFGDCTVPS 276


>gi|152981643|ref|YP_001352264.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281720|gb|ABR90130.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 321

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 129/283 (45%), Gaps = 8/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  +  +GS + AAEQL  SQ ++SR++  LE  +G++L  R    + LTE G +  
Sbjct: 15  MQTFVRIVEAGSLSAAAEQLKTSQPTVSRRLQALERSLGLRLLQRSTHVMKLTEDGERCF 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    +  + +L+ +  +P G LR+      GQ  L   L ++L  YP + ++ +
Sbjct: 75  ARAKELLDNWKAMEADLRGTQDEPEGTLRVLVPHAFGQEHLIAPLADYLGRYPRVSVEWM 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D   +  DCAI++   + + S++  KL  +     A+P  +K     L++ EL 
Sbjct: 135 LHDRHPDFIAEGIDCAIQVGV-VVNPSVVAIKLFDVPRIIVASPQLVKAHASSLTVDELH 193

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               + F     + +         +     +PR+S    +S  ++      G G  ++  
Sbjct: 194 TLPWLAFRTFYREEVVLTRQSDGAEHAFSIQPRMST---DSLYALRTAVATGLGAGIVSG 250

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++V D+     L+ ++ D   P   VY  YP A     +L+ F
Sbjct: 251 WLVADDIAQGRLLHLVPDWRAPPLPVYLVYPHARYYPARLRLF 293


>gi|120608988|ref|YP_968666.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120587452|gb|ABM30892.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 298

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 140/309 (45%), Gaps = 31/309 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V  +GS T AA QL  + S +SR ++ LE ++   L  R  R + LT
Sbjct: 1   MKTTLEELQAFAAVVDAGSVTAAAAQLEQTASGVSRALARLEKKLDTTLLRRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G      T  +   L+  +  +     +P+G+LR+        +++   +  F   YP
Sbjct: 61  EEGQAFLTRTRAILAALDEAEEHMAARRGQPAGRLRVNAATPFMLHVVAPLVPAFRDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D ++ID+     D AIR+   ++ S+L  R L +  +   A+P Y+     P
Sbjct: 121 QIALELDTDERNIDLLERRTDVAIRI-GALRDSTLHARPLGSSRLRVLASPAYVATHGRP 179

Query: 181 LSIQELDKHNLITFG-----DLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            S   L +H L+ F      +L P +      W AT D          +  +S  ++ Q 
Sbjct: 180 KSAAALAQHTLLGFTQPEALNLWPLRGPHGDAWAATPD----------IAASSGETLRQL 229

Query: 235 CVLGSGIALLPDYIV---KDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFR 287
            + G+GIA L D++    ++  +LV+++     DV  P   VY+      +NT       
Sbjct: 230 ALQGTGIACLADFMTARDRERGDLVQLLARDTADVRQPISAVYY------RNTQLASRIA 283

Query: 288 NFI-FLKAR 295
            F+ FL AR
Sbjct: 284 CFLDFLAAR 292


>gi|49083952|gb|AAT51161.1| PA0181 [synthetic construct]
          Length = 311

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 10/187 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ F   A +GSF  AA +L L+ + + + ++ LE+ +G++LF R  R LTLTE G   
Sbjct: 6   NIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAG--- 62

Query: 67  HRVTSEVYHKLETTQIELQE-SSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            R   EV   LE  Q  L   SSV  +PSG L+++  +  G++ +   L EFL  YPDI 
Sbjct: 63  ERFLQEVGGSLEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREP 180
                DN+ +D+  +  D AI     +    ++ R L   H+   A+P YL++    R P
Sbjct: 123 PDWHFDNRQVDLIGEGFDAAIGGGFEL-PPGVVARNLTPGHLILLASPTYLRDKPPIRHP 181

Query: 181 LSIQELD 187
             +   D
Sbjct: 182 GDLGGFD 188


>gi|300310059|ref|YP_003774151.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072844|gb|ADJ62243.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 283

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 114/264 (43%), Gaps = 18/264 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DW+ LR F     +GSF+ AA  L ++ ++I R++  LE  +   LF R A  + LT
Sbjct: 1   MHADWESLRSFAAFVDAGSFSGAARVLGVTHATIGRRLQQLEQTLAAPLFIRRADDIELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  +      +  +       L    ++  GKLR+A T  +G   L   L   L  +P
Sbjct: 61  RLGESVLAAARAMQDQTRQLARTLAGEDLRMEGKLRLACTDAMGTLFLAPRLPSLLQQWP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L + ++ + ++   AD A+R  +P Q   LI R+L  +  +       +   R  
Sbjct: 121 ALDIELAMGHQTLSLARREADLALRFARP-QDGELIARRLGVVRFYLCGTADQVAAWR-- 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +     +I + D +P   E   WLA      G P    L+  S ++       G G
Sbjct: 178 ---HQRGSAPVIGYDDSVPDIPET-RWLAA--HADGNP--VRLRSASLVAQCMAARAGVG 229

Query: 241 IALLPDYI-------VKDNPNLVR 257
           +ALLP Y+       V+  P LVR
Sbjct: 230 LALLPSYLLAPELQTVESTPQLVR 253


>gi|296161939|ref|ZP_06844739.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887815|gb|EFG67633.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 313

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 125/291 (42%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF      GSF  AA +  LS +   + +S LE E+  +L +R  R L LT+ G   +
Sbjct: 7   LGVFVAAVEEGSFAAAARRFGLSAAMAGKHVSALEAELNAQLLHRTTRRLRLTDTGQTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +  + E  +S     G LRIA  +  G   L      ++  +P + ++++
Sbjct: 67  ERCKRILEAFDEAKREASDSQGTARGVLRIAAPVTFGAMHLGEVAARYMEDHPHVNVEVL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+     D AIR+ K ++   L+ R+L    M   A+P YLK    P    +L 
Sbjct: 127 LGDRYVDLIDAGVDVAIRIGK-LEDPGLVTRRLAPCRMVVCASPAYLKRHGTPRKPDDLL 185

Query: 188 KHNLITFGDLIPK---CMEDF-NWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +   + F + +      + D  N    +D P       C +  N+   ++   + G+GI 
Sbjct: 186 RAQRLAFSEAVSAGDWTLHDRQNRAHVIDGP-------CRMTANNTQMLLASAIAGAGIV 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P ++      +  LV ++        T+   YP A +   K++ F +++
Sbjct: 239 YGPTFVFGAHIRSGELVALLPAYRAADLTIQAVYPSARRIPLKVRRFVDYL 289


>gi|222084977|ref|YP_002543506.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722425|gb|ACM25581.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 298

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 132/289 (45%), Gaps = 15/289 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  +GS + A   L  S + IS++I  LE  +G +L  R  R ++LTE G   +
Sbjct: 7   LEIFASVVATGSMSLAGRALGFSPAVISKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +  +   S +  G L+I+     G+  +  +LK F+  +PD+ I LI
Sbjct: 67  DRVLAILAGLEEAEAYIAGRSAQMQGTLKISAPTSFGRLHIAPHLKTFMQSHPDLAINLI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  DI     D AIR+ + +  SSL+ R+L  +     A+P Y+     P +I +L 
Sbjct: 127 LTDEFTDIVGGGYDLAIRIAE-LTDSSLVARRLAPVRRLLCASPAYVATHGMPENIDDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +   +  P  ++      T  RP G      L  NS   I +  + G GIAL   +
Sbjct: 186 RHICLPAHNHDPWRLDGPKGALTF-RPEG-----MLITNSSEVIREAVIAGLGIALRSTW 239

Query: 248 IVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
            +       R+++  + P++      T+   YP       K++ F +F+
Sbjct: 240 DIGPELKDGRLVQ--VLPAYEGSHNVTLSAVYPSRQFLPAKVRVFIDFL 286


>gi|254245613|ref|ZP_04938934.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124870389|gb|EAY62105.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 431

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 1/193 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  L  F  +  +GS + AA +L LS S +S++++ LE+ +G++L +R  R  TLT+ G
Sbjct: 46  DFPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESRLGVRLLHRTTRQQTLTDDG 105

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  +++     SG LR+    +LG+  +   +  F   +P + 
Sbjct: 106 AQFHAQVLRILAEVEHAETLMRDRRGTVSGVLRVTAPGELGRLRIAPLVAAFQQRHPQLT 165

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P YL     P   
Sbjct: 166 VQLMLTDAVVDLLAADIDVAVRIGN-LADSTMIARELAPNHRVLCASPGYLAAHGWPAHP 224

Query: 184 QELDKHNLITFGD 196
            EL  H  I  GD
Sbjct: 225 AELRAHRCIVMGD 237


>gi|270262695|ref|ZP_06190966.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043379|gb|EFA16472.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 302

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 118/247 (47%), Gaps = 3/247 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  V   GSF+  AE++ LS + +   I  LE  +GI+L  R  R  +LT+ GS 
Sbjct: 5   ESMSVFVRVVERGSFSAVAEEMRLSGTMVGLHIKALEKHLGIRLLNRTTRRQSLTDFGSA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   +E T+         P G+L++   +  G + L      FL  +P++ + 
Sbjct: 65  YYQSCRRILADIEDTESVALALHQSPRGRLKVGCPVSFGVHALSPATARFLTNWPEMTLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L +K +D++ +  D  I++ +    +SL+ R L        A+P YL+    P+  +E
Sbjct: 125 LVLSDKTMDMAEEGLDVMIKVGELEHVNSLVARPLAAYRSVICASPAYLERAGTPVHPEE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + F    P    +++ L    + I  P    + VN+  ++    + G GI + P
Sbjct: 185 LIEHRCLGFAH--PLAGSEWS-LQQGGKLIKVPVNIVMAVNNGEALRSAALNGLGILMQP 241

Query: 246 DYIVKDN 252
           + ++ ++
Sbjct: 242 EVLLAED 248


>gi|241205836|ref|YP_002976932.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859726|gb|ACS57393.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 298

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 121/295 (41%), Gaps = 17/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR GSFT A  +L ++Q+++S QI  LE  VG  LF R  R + LT+ 
Sbjct: 7   FPLNALRVFEAAARLGSFTKAGNELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTDT 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E +  L       ++S     G L I++T       L   L  F L +P I
Sbjct: 67  GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++    +  ID   +  D  IR         L   +L+ +      +P   +       
Sbjct: 124 AVRFQASSDIIDFGREQIDVGIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAETAGGIKE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++L K +L   GD+  K   +   +   D   RP         Q+ S        + G 
Sbjct: 183 PRDLLKFDLFDAGDIWWKQWFEAAGITETDLDRRPRN-------QLGSQAVEADAAIAGH 235

Query: 240 GIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+A+L          L R+    E   +     +  YPE  +N  K+KAFRN+I 
Sbjct: 236 GVAILHPAFYTAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWIL 290


>gi|224824895|ref|ZP_03698001.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602566|gb|EEG08743.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 317

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 99/195 (50%), Gaps = 5/195 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A+SGSF  AA  L +S +++S+ ++ LE  +G++L  R  R L LT +G       
Sbjct: 13  FVQAAQSGSFAAAARSLGISSAAVSKNVASLEQGLGVRLMNRTTRSLKLTAEGLAFLEQA 72

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 L+     +    V P+G++RI+T+   G++ +   L   L  +P + +++  D+
Sbjct: 73  RIALDALDAAVDTVAAQRVVPAGRVRISTSAAFGRDQVMPALPGLLERHPALSVEVDFDD 132

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D A+R  + +  S+L+ R +  ++M   A+P YL     P + Q+L +H 
Sbjct: 133 RRVDLVQEGYDLAVRGGQ-LVDSALVSRLICRLNMVLIASPAYLARYGVPRTPQDLPQHR 191

Query: 191 LIT----FGDLIPKC 201
           LI      G L P C
Sbjct: 192 LIARRFLGGRLSPWC 206


>gi|170695190|ref|ZP_02886337.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170139810|gb|EDT07991.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 294

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 132/286 (46%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS T AAE+  +S + + + I  LET +G +L  R  R  +LTE G + +
Sbjct: 7   MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLETRLGTRLLTRTTRRQSLTEIGRQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L++   +  G  +    + ++L  +PD+ ++L 
Sbjct: 67  EQCRRILADVKDAESLAEAMAAAPRGVLKVTVPLTYGVEVFSSAMTDYLSAWPDVTLELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+  D+  +  D A+R+   +  SS + R L    M A A+P YL     P +  +L 
Sbjct: 127 LSNRMRDLVEEGFDAAVRIGH-LPDSSFVARPLKPYRMRACASPAYLARAGIPRTPADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F     +        +  + P+   R    + N+  ++    + G G+ L P+ 
Sbjct: 186 HHECLGFLHWGREGTWRLGGESATENPL---RAGRFRANNGQALKVAALRGFGLVLQPEA 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++    ++  LV ++E+ +     V+  YP   + T KL +F +F+
Sbjct: 243 LLAREIESGELVSVLEEHLPQGAPVHLVYPRDRRATPKLTSFIDFV 288


>gi|34497625|ref|NP_901840.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34103481|gb|AAQ59843.1| probable transcriptional regulator, LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 306

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 129/281 (45%), Gaps = 10/281 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V ++G+ + AA++L +S +++SR+++ LE  +GI+L  R  R   +T +G       
Sbjct: 10  FMEVVKAGTLSGAAQELGVSTAAVSRRLANLEVRLGIRLLNRTTRRAAVTYEGELYLAEG 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            ++  +LE  +  L  +   P G LR+  T   G+  +   + +F+ L+PD+ +QL L +
Sbjct: 70  KKILGELEELEQRLASAHSVPKGLLRVNATFGFGRQFIAPAIADFVELHPDVDVQLSLSD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +++  D  D  IR    +  + L  RK+        A+P YL+    P S  +L +H 
Sbjct: 130 RPVNLIEDGFDVCIRF-GDLPDARLTSRKIACNRRLLCASPGYLERFGIPASPMDLQRHR 188

Query: 191 LITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248
            I    +I +  E +  W           ++   +  N     + + + G GI L  ++ 
Sbjct: 189 CI----VIRESDETYGAWHLYSGAAQANVKVRGTVSTNDGEVAVDWALRGLGILLRSEWN 244

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           V     +  L  ++ D   P   ++  YP     + K++AF
Sbjct: 245 VAPYLRSGRLREVLGDWRFPPADIHAVYPMKSNLSAKVRAF 285


>gi|220908328|ref|YP_002483639.1| LysR family transcriptional regulator [Cyanothece sp. PCC 7425]
 gi|219864939|gb|ACL45278.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 7425]
          Length = 293

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 134/297 (45%), Gaps = 34/297 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F      GSF+  A +L  +Q +IS+QI+ LE  + ++L  R  R ++LT++G + +
Sbjct: 8   LKSFVRTVEMGSFSAVARELGTTQPTISKQIAALEAYLDVQLLVRSTRKVSLTDEGLRFY 67

Query: 68  RVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                V   L        ESSV     PSG+LRI  ++  GQ  +   LK FL  YP IQ
Sbjct: 68  EHCQFVLAALSEA-----ESSVGKRQNPSGRLRINCSVAFGQMQVLPRLKRFLDRYPQIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQ----RKLVTIHMHAYAAPHYLKNCRE 179
           I L + +  ID+  +  D AIR+ + +  S + Q     + VT+     AA  YL+   +
Sbjct: 123 IDLTMADHFIDLVEEGMDLAIRIGRFVDPSLMAQPIGVSRFVTV-----AAVDYLEKFGQ 177

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCV 236
           P    +L +HN I +       +  +          G+  ++    LQVN+ +++ +  +
Sbjct: 178 PQVPTDLLQHNCIVYTRQSTGNVWQY----------GDTSVTVQGNLQVNNSIALREAVL 227

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI   P +   +     ++  ++ D       +   Y        KLK F +F+
Sbjct: 228 AGIGIGTSPIWAFSEELQKRSVKLVLADYEPEPLPIQVVYRRGRFQAAKLKCFIDFL 284


>gi|49084716|gb|AAT51225.1| PA1312 [synthetic construct]
          Length = 304

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 14/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+   F  V   G  + AA+ L  +++ +S  +  LE E+G+ L  R  R + LT+ G +
Sbjct: 5   DRFETFRAVVDCGPLSAAADTLGQTRAVVSFNLKRLEAELGVSLLSRSTRRMALTDAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   +V  +      + +    +  G LR+ TT + G   L   L+ F  L+P +Q+Q
Sbjct: 65  FYQRCVKVLDEARLAIDDARAEHGELRGSLRVTTTQEYGLRQLVPALQAFARLHPALQVQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   D+  +  D AIRL + ++ S+    +L +  + A A+P  L    EP     
Sbjct: 125 LSTSSLHADLIGERFDVAIRLGR-LEDSTHHAVQLASFEVLAVASPACLAALGEPPPTDL 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVLGS 239
                L   G    +  +   W   V  P G       PR   L  ++  ++  + + G 
Sbjct: 184 ESLERLQNLGH--SRLADSLPW--QVRAPDGALRSYRGPRHPMLLADNAAALRAFALDGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+LPD++V+ +     L R++ D   P   V+  YP       K++AF +F+
Sbjct: 240 GIAVLPDWLVQADLRCGALQRLLADHGFPLQGVHAVYPPTRHLPSKVRAFIDFL 293


>gi|238894052|ref|YP_002918786.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546368|dbj|BAH62719.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 320

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F  AAE+L +S + +S+++S LE  + + L +R  R +T+TE+G +
Sbjct: 15  NDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVMLLHRTTRRVTITEEGER 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    EL +    P G LRI ++   G+ ++   L    L YP ++++
Sbjct: 75  IYEWAQRILQDVDEMMDELSDVRQVPQGTLRIISSFGFGRRVVAPALSALALQYPQLELR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + ++ +D+  +  D  IR+   I + +LI R+L   H    A+P +L     P  + +
Sbjct: 135 FDVQDRLVDLVNEGVDLDIRVGDDI-APNLIARQLAANHRVLCASPQFLARHAPPKQLSD 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 194 LAA---------LP-CLV----IKERDHPFGVWQLHSKEGQHAIKVTGPLSSNHGEIVHQ 239

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V++N    +LV+++ D   P+  V+  Y   L  + K++    F+
Sbjct: 240 WCLDGQGIALRSWWDVRENIASGHLVQVLPDYWQPA-NVWAVYVSRLATSAKIRTTVEFL 298


>gi|294340728|emb|CAZ89120.1| putative Bacterial regulatory protein, LysR [Thiomonas sp. 3As]
          Length = 302

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 11/256 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA SGSF+ AA QL  + S++SRQ+S LE  +G++L  R  R L LT  G       
Sbjct: 16  FLRVAESGSFSAAARQLGTTPSAVSRQVSRLEKHLGVQLILRTTRQLRLTAAGDAARVRC 75

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E+           Q+ +  P G + I+      +++L   L +FL  +P +Q+QLI  +
Sbjct: 76  GELVAAAHAVMQVPQQIAGTPKGSICISAPKAFARHVLHPLLLQFLAQWPQVQLQLIATD 135

Query: 131 KDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            ++D   +  D  IR+ R P +      R+L+ +     AAP YL          +L  H
Sbjct: 136 HEVDPFREGVDLMIRVTRHPPE--GFAARELMQVEQVLCAAPAYLAAHPAITHPSDLAVH 193

Query: 190 NLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           + +  G D   +C   F    T  + + + R +   VN     ++  ++G G+  LPDY+
Sbjct: 194 SCLPLGEDAHDRCWR-FRQGDTETKVVVQGRYA---VNHSALRLEAMLVGLGLCTLPDYV 249

Query: 249 VK---DNPNLVRIMED 261
            +   +N + V+++ D
Sbjct: 250 ARHALENRSAVQVLPD 265


>gi|260430606|ref|ZP_05784579.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260418635|gb|EEX11892.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 305

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 3/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  V   GS T     L L+ +  S++I  LE+ +G++LF R  R +T TE G   +
Sbjct: 7   LRVFVRVVELGSITSGGRDLRLTPAVASKRIKELESRLGVRLFNRTTRSITPTEVGGVFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   L+  +  +   S  P G LR+   + +G+ ++   + EF   YP++Q+Q+ 
Sbjct: 67  EQAKAVLASLDEAEAVVANFSETPRGALRVTAPLGIGRRIIAPLVPEFTERYPEVQVQMR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           L ++ +D+  +  D A  L  P + S+L  R +        AAP YL+    P S ++L 
Sbjct: 127 LSDRLVDMVGERLDVAFFLGVP-RDSNLKLRHICDCPGVLCAAPGYLERHGTPASPEDLL 185

Query: 187 -DKHNLI 192
             KHN +
Sbjct: 186 GGKHNCL 192


>gi|186472859|ref|YP_001860201.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195191|gb|ACC73155.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 308

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 8/240 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F  +A +GSF+ AA +  +S S+++  +  LE EVG +L  R  R L  T +G +
Sbjct: 5   DALRLFVEIAEAGSFSAAARKSTVSTSTVTLALQKLEEEVGARLIMRTTRRLAFTHEGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V    +   + L+E     +G +R+  + D G+  +   L +F+ LYP +Q+ 
Sbjct: 65  FLDDARRVLADWDAAILSLREDG-PLNGPIRLTASTDFGRTRVVPLLDKFMSLYPQVQVS 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L +  +D+   + D A+R   P+    L  R L+T      AAP Y     + +   +
Sbjct: 124 LLLTDGVVDLVDQHLDLALR-HGPLIDPRLKARLLLTGPRVVCAAPSYWAAHGKAMHPSQ 182

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLGSGIAL 243
           L  HN +    ++ +    F NW   VD      R+S  +V S  S++ ++ V G G+ L
Sbjct: 183 LSSHNCL----ILARPDAPFTNWPFVVDGKQIAVRVSGNRVASDGSVLREWAVNGYGVIL 238


>gi|113868110|ref|YP_726599.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526886|emb|CAJ93231.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 307

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 140/297 (47%), Gaps = 16/297 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA +GS + AA  L ++ +++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 11  ELGFFTSVATAGSLSAAARDLGITTAAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVY 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++     L  S  +PSG LR+  T+  G+  +   + E++  YP++ +QL
Sbjct: 71  LEHARRILSEIDDLDQILTRSKGRPSGLLRVNATLGFGRMHVAPVISEYVATYPEVDVQL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  +R  +P   + ++ RKL        A+P YL++   P +  +L
Sbjct: 131 QLSADPPPLTEDAFDVCVRFGQP-PDARIVARKLAPNRRLLCASPKYLRSHGTPHTPADL 189

Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239
            +HN I     I +  + +  W  T  +   + R   + V   L+       + + + G 
Sbjct: 190 RQHNCIG----IRQGSDAYGVWRLTSGKGT-KARTESVHVRGNLTTNDGEIAVNWALQGH 244

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI +  ++ ++    +  LV+++    TP   +Y  Y +  + + +++ F  F+  +
Sbjct: 245 GILMRAEWDIERFLRSGRLVQVLPQYATPEADIYAVYQQRHQLSSRIRLFVEFLAAR 301


>gi|107099170|ref|ZP_01363088.1| hypothetical protein PaerPA_01000180 [Pseudomonas aeruginosa PACS2]
 gi|218888926|ref|YP_002437790.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254237581|ref|ZP_04930904.1| hypothetical protein PACG_03662 [Pseudomonas aeruginosa C3719]
 gi|296386668|ref|ZP_06876167.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313112244|ref|ZP_07798017.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|126169512|gb|EAZ55023.1| hypothetical protein PACG_03662 [Pseudomonas aeruginosa C3719]
 gi|218769149|emb|CAW24909.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310884519|gb|EFQ43113.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 310

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 10/187 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ F   A +GSF  AA +L L+ + + + ++ LE+ +G++LF R  R LTLTE G   
Sbjct: 6   NIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAG--- 62

Query: 67  HRVTSEVYHKLETTQIELQE-SSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            R   EV   LE  Q  L   SSV  +PSG L+++  +  G++ +   L EFL  YPDI 
Sbjct: 63  ERFLQEVGGSLEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREP 180
                DN+ +D+  +  D AI     +    ++ R L   H+   A+P YL++    R P
Sbjct: 123 PDWHFDNRQVDLIGEGFDAAIGGGFEL-PPGVVARNLTPGHLILLASPAYLRDKPPIRHP 181

Query: 181 LSIQELD 187
             +   D
Sbjct: 182 GDLGGFD 188


>gi|293605825|ref|ZP_06688197.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292815783|gb|EFF74892.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 292

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 127/288 (44%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L++F  V  +GSFT AA+ L  +++ +S  +  LE E+G+ L  R  R L LT  G  
Sbjct: 5   NRLQMFVAVVDAGSFTAAADSLGTTKAVVSFNVKQLEQELGVALLTRSTRRLALTPAGEG 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   S + H  +    + +      SG LR+  ++D G  ++   L  F  L+P +++ 
Sbjct: 65  FHASCSRLLHDADAAVDQARSGQTALSGSLRVTASVDYGNRIVVPALAAFARLHPALRVA 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               +   D+  +  D AIR+   +  SS    ++    +   A+P  L     P S   
Sbjct: 125 YQASSAQADLIGERLDVAIRV-GALADSSHRATRIGEFKLLLVASPALLAEHGTPRS--- 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           LD    + +    P   + +    +  R          Q ++  +++ +   G G+A LP
Sbjct: 181 LDALAALPWLANRPGRSDHWRLTDSKGREHALRVAPVAQADTASALLAFAESGCGVAALP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D+++++      L R++     P   V   YP+    + K++ F +F+
Sbjct: 241 DWLLEEPLARGALQRVLPSYALPRQPVCAVYPDTRHVSAKVRRFIDFL 288


>gi|91781381|ref|YP_556588.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91694041|gb|ABE37238.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 322

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 125/291 (42%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF      GSF  AA +  LS +   + +S LE E+  +L  R  R L+LT+ G   +
Sbjct: 7   LGVFVAAVEEGSFAAAARRFGLSAAMAGKHVSALEAELNARLLQRTTRRLSLTDTGQTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +  + E  +S     G LR+A     G   L   +  +L  +P + ++++
Sbjct: 67  ERCKRILEAFDEARREASDSQGTARGVLRVAAPATFGAMHLGEVVARYLEDHPHVNVEVL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+     D AIR+ + +++  L+ R+L    M   A+P YLK    P    +L 
Sbjct: 127 LGDRYLDLIEAGVDVAIRIGR-LENPGLVTRRLALCRMVVCASPAYLKRHGTPRKPDDLM 185

Query: 188 KHNLITFGDLIPKC----MEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
               + F + +        +  N    +D P       C +  N+   ++   + G+GI 
Sbjct: 186 HAQRLVFSEAVSAGDWTLRDGKNRAHVIDGP-------CRMTANNTQMLLASALAGAGIV 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P ++   +     LV ++ D      T+   YP A +   K++ F +++
Sbjct: 239 YGPTFVFGAHIRRGELVALLPDYRPADLTIQAVYPSARRIPLKVRRFVDYL 289


>gi|167841234|ref|ZP_02467918.1| probable transcriptional regulator [Burkholderia thailandensis
           MSMB43]
          Length = 214

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 101/200 (50%), Gaps = 3/200 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F     +GSFT AA ++ +S+S++ + ++ LE ++G++LF R  R L LT +GS  +  
Sbjct: 14  AFVHAVSAGSFTAAAARMGVSKSAVGKSVAKLEAQLGVRLFDRTTRSLGLTAEGSLYYAS 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +++  +L   Q  L     + SG LR++  +  G+  +   L +    +P +++ L   
Sbjct: 74  CAKILDELAHAQSALAHRRQQASGPLRVSLPVSFGRRWVLPVLLDVAERHPLLRLDLSFT 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R+  P  S+SL  R L        A+P Y      P + ++L +H
Sbjct: 134 DRPVDLVDEGIDLAVRIGDPGDSASLACRGLGRQRSVPCASPAYFARRGRPRTPEQLREH 193

Query: 190 NLITF---GDLIPKCMEDFN 206
           + I F   G + P  + D N
Sbjct: 194 DCIVFARGGRVAPWLLADDN 213


>gi|116253315|ref|YP_769153.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257963|emb|CAK09061.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 298

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 123/298 (41%), Gaps = 23/298 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR GSFT A ++L ++Q+++S QI  LE  VG  LF R  R + LT+ 
Sbjct: 7   FPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTDT 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E +  L       ++S     G L I++T       L   L  F L +P I
Sbjct: 67  GERLAPKVTEAFAMLHDAMATARDSV---EGTLAISSTHTFASKWLAPRLGSFHLKHPAI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCRE 179
            ++    +  ID + +  D  IR         L   +L+ +      +P   +     RE
Sbjct: 124 AVRFQASSDIIDFAREQIDVGIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAEAAGGIRE 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCV 236
           P  +   D   L   GD+  K   +   +   D   RP         Q+ S        +
Sbjct: 183 PRDLLNFD---LFDAGDIWWKQWFEAAGVTETDLDRRPRN-------QLGSQAVEADAAI 232

Query: 237 LGSGIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G G+A+L          L R+    E   +     +  YPE  +N  K+KAFRN+I 
Sbjct: 233 AGHGVAILHPAFYAAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWIL 290


>gi|270262500|ref|ZP_06190771.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043184|gb|EFA16277.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 299

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 122/257 (47%), Gaps = 9/257 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V + GS   A  +L  S  +I+R I+ LE   G +L  R  R L  TE G +
Sbjct: 5   DELAIFVAVIQHGSLAAAGRKLRRSAPAITRAIASLEQRFGTRLVERTTRRLAPTEAGLR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      + H  ++  ++  +S +  SG LR+ + +  G+  +   +  FL  YP +QI+
Sbjct: 65  LAERARLLLHDYDSAVLDTADSQL--SGMLRVTSPVQFGRKHVAPLVMAFLDRYPQMQIE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L+++++D+  +  D A+R+    Q SS + R+L  +     A+P YL    +P    +
Sbjct: 123 MVLNDRNLDLIDEGLDVAVRIGHQ-QDSSRVARRLGQVSRVTVASPAYLARRGKPQHPAQ 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ I            F      +R    PR+   +V + L  ++    G GIA L 
Sbjct: 182 LTDHDTIVGTQRASLREWRFGPQENGERVRLTPRLLINEVETQLLAVRA---GKGIARLL 238

Query: 246 DYIVKDN---PNLVRIM 259
            Y V D+     LVR++
Sbjct: 239 SYQVADDLAAGTLVRLL 255


>gi|262274008|ref|ZP_06051820.1| transcriptional regulator LysR family [Grimontia hollisae CIP
           101886]
 gi|262221818|gb|EEY73131.1| transcriptional regulator LysR family [Grimontia hollisae CIP
           101886]
          Length = 298

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 140/294 (47%), Gaps = 13/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  ++ V   VA    FT AAE L +S+S +S+QI  LE  +G++L  R+ R + LTE G
Sbjct: 4   NLQQMVVLATVAHEQHFTRAAEYLGISKSQVSKQIRFLEARLGVQLVQRNTRSVALTEAG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  +  +     + SG+LR+      G   +   L  F   +P+++
Sbjct: 64  KQYAAFGHQIVETMQNAEAVVAGFRNEVSGRLRVGIAQSFGNAQITQLLSSFQAQFPELE 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ L +   ++  +  DC + + + + S  ++ RKL        A+P Y++    P   
Sbjct: 124 LEVHLFDHCPNLVENGFDCWLVIHE-VPSEGMVTRKLGDCQFKLVASPSYIEKNGTPKHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
            +L +HN IT+ ++  + + D  W  +  R   E  ++     ++N+  ++++    G G
Sbjct: 183 SDLREHNCITYQNV--QHIYD-QW--SFQRDGSEQSVTVRGSYRINNAPAVLEAAKSGVG 237

Query: 241 IALLPDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y++ D   N  L  +M+D   T    VY  YP       K++ F +F+
Sbjct: 238 IAYIATYLLNDEIKNGELNVLMKDWKPTMKLPVYAVYPRREYLAPKVRHFVSFL 291


>gi|157374363|ref|YP_001472963.1| carbonate dehydratase [Shewanella sediminis HAW-EB3]
 gi|157316737|gb|ABV35835.1| Carbonate dehydratase [Shewanella sediminis HAW-EB3]
          Length = 313

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    E     +   +    G L++  +   G   +   L EF+  +P++++Q
Sbjct: 66  LYTQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMTTHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+K   +P   ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLAASPEYIKLHGQPDRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    V G G+  L
Sbjct: 185 LVDHNCLVYQG---EWHEHSVWQFKQGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVYL 241

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV +++D  +T    +   YP       K+ AF +FI
Sbjct: 242 ASYLLEDEVAKGTLVPLLQDWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|307942029|ref|ZP_07657381.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307774819|gb|EFO34028.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 223

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 3/200 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F V+A  GS   AA +  LS +++S +++ LE+  G+ LF R  R ++LTE+G  
Sbjct: 4   NNLRLFLVIAEKGSLVAAARETGLSTTTVSERLASLESHYGVVLFNRTTRSISLTEEGRV 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V  ++      ++  +   SG +R++  IDLG+ L+   +  F L  P + I+
Sbjct: 64  LLEGAKTVLSEVSDLDARIRHGAETLSGPIRMSAPIDLGRGLISEVISSFTLKNPAVSIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+     D A+R    +  +SL  R L        AA  YL+    P + ++
Sbjct: 124 LSLSDGYVDLVGQGFDLAVRFGN-VTDTSLRVRSLGHFQRRVCAATAYLEQHGVPQTPED 182

Query: 186 LDKHN--LITFGDLIPKCME 203
           L  HN  ++ FG  +    E
Sbjct: 183 LANHNCLVMRFGGTLDNIWE 202


>gi|298489044|ref|ZP_07007067.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156542|gb|EFH97639.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 300

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 135/300 (45%), Gaps = 21/300 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF+ AA  L +S S++S  + GLE  + ++LF R  R + LTE G +L
Sbjct: 8   ELTAFVAIAEQRSFSGAARLLGVSPSALSHSMRGLEARLELRLFNRTTRSVALTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE    ++      PSG +R++ +    + L++  + +FL   P I I+ 
Sbjct: 68  FLRVQPLLGDLECAVNDVTSERNTPSGSIRLSASESSFKLLIRHVMPKFLEDNPQIHIEC 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I D++ +DI  D  D  IRL   +    +  R    +   A A+P YL     P +  +L
Sbjct: 128 IADSRLVDIVADGFDAGIRLFDDVPRDMIAIRFGPDVRFAAVASPDYLDIHPAPKAPHDL 187

Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H  I F    G L    +      A++D  +  P    + +++   + +  + G GIA
Sbjct: 188 KAHRCIRFRFASGTLFRWDLGHLGRTASID--VDGP----MTMDNINLMTEAALAGIGIA 241

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYF---C--YPEALKNTGKLKAFRNFIFLKARDW 297
            LP++ V+++    R++   + P +  Y+   C  YP        L+ F   +    RDW
Sbjct: 242 WLPEHQVEEHLKDGRLVH--LLPEWGPYYPGACLYYPANRHPPMALRMFAEAV----RDW 295


>gi|257487616|ref|ZP_05641657.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331013099|gb|EGH93155.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 306

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 130/287 (45%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F+++A+ GS    A +L ++  +IS+++S LE  +G +L  R  R ++LT +G    
Sbjct: 7   LSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEVRLGTRLVNRTTRSMSLTAEGELYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +++  +  +  SS  P G +R+  ++  G+  +   L  F   YP++QIQL 
Sbjct: 67  SHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQLE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D++    D  IR    +  ++   RK+ +      A+P YL+    P  + EL 
Sbjct: 127 ISDHPLDLATHGFDLGIRF-GSLPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAELQ 185

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN I    +  P  +  F+             + C   N     + + + G GI L  +
Sbjct: 186 HHNCIFLRQNETPYGVWSFSNGGRTQNVKVHGALGC---NDGEVALNWALEGFGILLRAE 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +     +  L  ++ED       VY  YP+ L  + +++   +F+
Sbjct: 243 WDIARYVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRCLIDFL 289


>gi|218670649|ref|ZP_03520320.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 261

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 95/180 (52%), Gaps = 1/180 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +G+FT AA+ L + +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 10  MRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++  +LE     L  S   PSG+LR+  +      ++   L +F   YPDI++ L 
Sbjct: 70  ERAAQLISELEELDGSLSNSQSLPSGRLRVEMSGAFADAIVVPALCDFYQRYPDIRLDLG 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D  ++  DCA+R   P    SLI R++  + +   A+P Y++    P   ++L+
Sbjct: 130 VSDRTVDYLVENVDCALRAGTPAD-QSLIARRVSEMELITCASPSYIQKFGMPERPEDLE 188


>gi|91794151|ref|YP_563802.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91716153|gb|ABE56079.1| LysR, substrate-binding [Shewanella denitrificans OS217]
          Length = 294

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 5/192 (2%)

Query: 4   DW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DW    + F ++   GSF+ AA    +S S++S++I  LE ++G+ LF R  R + LTE 
Sbjct: 2   DWLTATKSFNLLVEHGSFSQAAAVAEISPSAMSKRIDWLEKQLGLSLFVRTTRQVNLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G      + ++  + E    E Q+ + +PSG LR+A    +G  +L   ++ FL+LYP++
Sbjct: 62  GFDFLSRSKDLVGQFEDMISETQQFANRPSGTLRVAANSVVGSAILMPCIEAFLVLYPEV 121

Query: 123 QIQL-ILDNKDI-DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + L IL   +  D+  D   C  R      SS+    KL    +  YAAPHYL N    
Sbjct: 122 TLHLDILPFGEFPDLDHDLVLC--RKFDNFNSSAHRGTKLYNYRVGLYAAPHYLANNPAI 179

Query: 181 LSIQELDKHNLI 192
             + ++ +H ++
Sbjct: 180 TQLADVSEHKMV 191


>gi|170751077|ref|YP_001757337.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657599|gb|ACB26654.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 288

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 138/303 (45%), Gaps = 36/303 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LR F  VA +G  + A+ +L++++S +SR++  LE EVG +L  R  RG  LTE 
Sbjct: 1   MDVDDLRTFVEVADAGGVSAASRRLNMAKSIVSRRLLRLEAEVGTQLLARTTRGAALTEA 60

Query: 63  GSKLH----RVTSEVYHKLETTQIELQESSVKPSGK----LRIATTIDLGQNLLQGNLKE 114
           G+       RV +EV   LE         +V P G     LR+A     G       + E
Sbjct: 61  GTTFREHAARVCAEVDAALE---------AVSPGGALRGLLRVAVPSTFGPTHFAPAIAE 111

Query: 115 FLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
               +P ++I     ++ +D+  +  DC IR+   +  S+L+ R++ +  +  +A+P Y+
Sbjct: 112 LTRRHPQLRINCRYSDRYVDLVTEGFDCGIRVGY-LPDSNLVARRIGSFSVRLFASPDYV 170

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS 230
                P + +++ +H  +          E + + A       RP G       + +S ++
Sbjct: 171 ATHGAPETPEDVPRHPAVMI------ATETWTFSAGGKPFPVRPTGR-----FKADSAIA 219

Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           I +    G+GIA LPD I +       L+ +M     PS  ++   P    ++ K++A  
Sbjct: 220 IAEATAAGAGIAALPDVIAEPYVAAGTLIPVMPRYALPSIGMFVVRPPGQHSSRKVQALT 279

Query: 288 NFI 290
           + +
Sbjct: 280 DLL 282


>gi|90410584|ref|ZP_01218600.1| hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90328825|gb|EAS45109.1| hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 314

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 136/283 (48%), Gaps = 21/283 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F   A  G+ T AA QL +S ++ S  +  LE ++GI+LF R  R L +T +G +  
Sbjct: 6   LELFVRTADIGNITAAAVQLDISPAAASAALKRLEKQLGIELFIRSTRQLRITAEGERFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+  +  + E   + +G++R++ + DLG+NL+   L E +   P +  QL 
Sbjct: 66  LHCRQALSSLDDAKASITEMKGEIAGEVRLSVSSDLGRNLILPWLDEVMDNNPKLSFQLS 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D  MD  D A+R  +P + S++I  KL T+     A+P Y+     P   ++L 
Sbjct: 126 IGDSLADFYMDKVDVALRYGQP-EDSTMIAFKLATVDRVICASPGYIATYGSPKKPEDLL 184

Query: 188 KHNLITFG---------DLIPKCMEDFNWLATVDRPI---GEPRISCLQV-NSYLSIMQY 234
           +HN + +          +LI K     N ++  D  I    + ++S  ++ N    + ++
Sbjct: 185 QHNCLLYQLGSKTYNQWELISK--NSGNTISNTDDSIKSRSKIKVSSNRMCNDGDIVKRW 242

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEAL 277
            V G GIAL     +  + N  R++E  + P    Y+  P +L
Sbjct: 243 AVAGKGIALKSRLDLSHDLNAGRVIE--LMPD---YYVEPTSL 280


>gi|78063769|ref|YP_373677.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971654|gb|ABB13033.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 305

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 126/266 (47%), Gaps = 10/266 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           E+LH+++S++ + ++ LE  +G+ LF R  R  +LT++G+  +        +++  +  L
Sbjct: 25  EKLHITRSAVGKSVARLEERLGVVLFQRTTRSQSLTDEGALFYDHCLRAMEQIQAGEALL 84

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +    +  G+LR++     G   +   L E    +P++ + L   ++ +D+  +  D A+
Sbjct: 85  ETGKWQMKGRLRVSMPTLFGHLCVAPILIELAKAHPELDLDLSFSDRSVDLVEERFDLAV 144

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R+     SS L+ R L    M   A+P YL  C EP + +EL++H  + +     +  + 
Sbjct: 145 RVGTLPNSSELVARPLGEHRMAFCASPAYLSRCGEPTTYEELERHKALAYT----RFGQV 200

Query: 205 FNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
             W   VD  R   +P +  L  +   ++M   V   GIA LP ++V+D      L  ++
Sbjct: 201 HRWRVFVDGQRVELQPAVRLLS-DDLSALMDAAVADLGIAWLPYWLVRDALRGGVLRELL 259

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKA 285
            D     F +   +P  L    K++A
Sbjct: 260 PDRPGVIFPIQAVWPYTLHLPLKVRA 285


>gi|253686893|ref|YP_003016083.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753471|gb|ACT11547.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 300

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 2/184 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +GS   AA    +S +++S+ +S LET +G++L  R  R +TLTE G +     
Sbjct: 10  FIRVVENGSIAAAARAKGMSPAAVSQSLSRLETHLGVRLLSRTTRSMTLTENGKRYFEKV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             + H +E    +   S  K  G L IATT   G+ ++   +  F   +PDI I+LI  +
Sbjct: 70  RHIPHDIELAS-QAAASETKLQGPLCIATTAAFGRYVIAPLMPAFKESFPDIDIELISTD 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           ++++  ++  D +IR+   + +  LI RK+ ++     AA  YL     P + +EL +H 
Sbjct: 129 RNVNHRLEGVDVSIRIEAQL-NDQLIARKIASLPFIFCAAQAYLDRAGTPQTPEELSQHA 187

Query: 191 LITF 194
            + F
Sbjct: 188 CLVF 191


>gi|218674327|ref|ZP_03523996.1| LysR family transcriptional regulator [Rhizobium etli GR56]
          Length = 288

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 19/260 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DWD LR F  +A+SG+   AA+QL +  ++ISR+IS LE  +G KL  R  R ++LT+
Sbjct: 8   NIDWDDLRHFLALAQSGTLLGAAKQLGVEHATISRRISSLEGRLGRKLVDRRGRRISLTQ 67

Query: 62  QGSKLHRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            G ++ R  + V   ++T  IE   + S  +  G +RI+    L   LL   +      +
Sbjct: 68  DGEQVARYAALV--AVQTAAIEQLGRSSPTELRGHVRISAPPALSSVLLAKPIAAVRRNH 125

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P ++I L+ + +   ++   AD A+R+ +P      I  KL     H YA+  YL    E
Sbjct: 126 PGVEITLVGEKRLASLNRREADIAVRMSRPEDGDYSIV-KLGETSFHLYASKTYL----E 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +  Q+      I + D +    +    +     RPI   R S L+  +          G
Sbjct: 181 TVPPQDW---TFIGYDDTMNASPQQSRLIELAAGRPIAV-RSSVLEFQA-----AAASFG 231

Query: 239 SGIALLPDYIVKDNPNLVRI 258
           +G+ +LPD++  ++  L RI
Sbjct: 232 AGVVMLPDFVALESSGLRRI 251


>gi|78063703|ref|YP_373611.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971588|gb|ABB12967.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 305

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 92/188 (48%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF+ AA  L +S S++S  +  LE  +G++LF R  R + LTE G +L
Sbjct: 8   ELTTFITIAEQRSFSGAARILGVSPSALSHAVRHLEARLGVRLFNRTTRSVALTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     LE    +   +  +PSG++RI+ +    + L++  L  F+  YPDI ++ 
Sbjct: 68  LLRVRPAVVDLEDALNDAATARNRPSGQIRISASEAAARPLIRHVLPAFVARYPDIHVEF 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + D++ IDI     D  IR+ + +    +  +   TI   A A+P YL     P   Q+L
Sbjct: 128 VTDSRLIDIVEHGFDAGIRVHEDVPRDMIAVKFGDTIRFVAVASPDYLSRHALPARPQDL 187

Query: 187 DKHNLITF 194
             H  I +
Sbjct: 188 VDHRCIRY 195


>gi|330010623|ref|ZP_08306849.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328534448|gb|EGF61043.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 310

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 115/264 (43%), Gaps = 10/264 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D+  L++F  V  + SF+  A +  +S S ISR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   SVDFRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  +    Q  LQ+ +  P G +RI   +  GQ  +   L E    +P 
Sbjct: 66  AGRFFAASARELLGQYADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELAARHPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q  L+L +  ID   D  D   R+   +  +    R   +   +  A+P Y+     P 
Sbjct: 126 LQFDLMLTDDFIDPHRDATDILFRISS-LPDAGYHARVFGSQRYYLTASPEYVSRYGSPT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S + L +H  + +G           WL     +  +  P    +  N+  +++   + G 
Sbjct: 185 SPEALHQHRTLVYG----GSQGANRWLFRQREEAWVHYPLTPLMTSNNADALLTSAIGGV 240

Query: 240 GIALLPDYIVKD---NPNLVRIME 260
           GI L PD++V     N  LV +M+
Sbjct: 241 GIVLFPDWMVSGALHNGTLVTLMD 264


>gi|295699371|ref|YP_003607264.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438584|gb|ADG17753.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 318

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 98/182 (53%), Gaps = 1/182 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +  + SFT AAE L++ +++ +  +  LE  +G  L  R  R L++T +G+  +
Sbjct: 8   MRTFIRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTALLVRTTRRLSITPEGAAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++   ++  +  ++ S+   +G+LRI     +   ++  +L EF  LYP++ + + 
Sbjct: 68  ERCAQILADIDEMEASIRNSTDNLTGRLRIEMPSAVASAIVLPSLDEFHTLYPNLDLAIG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+ +D+  +  DC+I+L + +  S+L+ R+L T+     A+P YL     P  + EL 
Sbjct: 128 VSNRTVDMVSEAIDCSIQLGE-LPDSNLVARQLGTLDQVTCASPGYLARHGSPADLDELR 186

Query: 188 KH 189
            H
Sbjct: 187 AH 188


>gi|254503124|ref|ZP_05115275.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222439195|gb|EEE45874.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 306

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 1/188 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  VA++ S T A   L L  ++++R++  LE ++G +L +R AR   LT +G  
Sbjct: 3   DDIALFVHVAQARSLTGAGAALSLPAATVTRRLQRLEDKLGHQLVHRSARKFGLTSEGEA 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +  + +  + E T   L     + SG L +A   ++    LQ     F+  +P I++ 
Sbjct: 63  YFQAFAGIVEQAEVTARNLSAEMHELSGPLVVAAPTNISVGALQPMWTAFMRRHPGIRLD 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L N +ID+  D  D A+R+  P Q   L Q+K+ +I     AAP YL+    P    +
Sbjct: 123 LRLSNFNIDLLEDRIDLALRI-GPQQDQRLYQKKMGSISTAVMAAPSYLEGGNMPEGPND 181

Query: 186 LDKHNLIT 193
           L++H +I 
Sbjct: 182 LERHAIIA 189


>gi|15595379|ref|NP_248871.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|254243290|ref|ZP_04936612.1| hypothetical protein PA2G_04098 [Pseudomonas aeruginosa 2192]
 gi|9946015|gb|AAG03571.1|AE004456_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126196668|gb|EAZ60731.1| hypothetical protein PA2G_04098 [Pseudomonas aeruginosa 2192]
          Length = 310

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 10/187 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ F   A +GSF  AA +L L+ + + + ++ LE+ +G++LF R  R LTLTE G   
Sbjct: 6   NIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAG--- 62

Query: 67  HRVTSEVYHKLETTQIELQE-SSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            R   EV   LE  Q  L   SSV  +PSG L+++  +  G++ +   L EFL  YPDI 
Sbjct: 63  ERFLQEVGGSLEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREP 180
                DN+ +D+  +  D AI     +    ++ R L   H+   A+P YL++    R P
Sbjct: 123 PDWHFDNRQVDLIGEGFDAAIGGGFEL-PPGVVARNLTPGHLILLASPTYLRDKPPIRHP 181

Query: 181 LSIQELD 187
             +   D
Sbjct: 182 GDLGGFD 188


>gi|322835119|ref|YP_004215146.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170320|gb|ADW76019.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 295

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 135/299 (45%), Gaps = 25/299 (8%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR   VF  V  +G+F+ AAE+L +S   + + I  LE  +  +L  R  R  +LT+ 
Sbjct: 2   DKLRNIEVFISVVETGNFSTAAEKLGISAVMVGKHIQQLEKYLNARLLQRTTRKQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     V  +++ T+  ++     P+G LRI+  + LG +++   L  +L  +  +
Sbjct: 62  GEVFYENGKRVLEQMKFTESAMESLQSVPTGLLRISAPVSLGSSVVAPMLARYLQKHSKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++LIL N  +D+  +  D AIR+ + I    L+ + L    M   A+  YL+    P +
Sbjct: 122 NVELILSNARVDLIAEGFDAAIRIGE-IGDDRLVAKPLNPYEMVICASADYLQRFGTPAT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYC 235
            ++L  H           C+    W       LA  +R      ++   V++    ++  
Sbjct: 181 PEDLKTH----------PCLVHTVWNQSEGWHLANAERTTSAWPVNSRYVSNDGHALRAA 230

Query: 236 VL-GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L G+G+ L P  ++ ++     L+ ++E  I     V+  Y    +   KL +  NF+
Sbjct: 231 ALEGTGLLLQPKVLLAEDIASGKLIPVLESFIPKPRAVHLVYLPDFRPRAKLTSLINFM 289


>gi|294138913|ref|YP_003554891.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293325382|dbj|BAJ00113.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 297

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 133/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GS T AAE+L +S+S +S+ +  LE     +L  R  R + LT+ G   
Sbjct: 8   RMLVFANVVEQGSLTAAAEELGISRSMVSQHLKKLELRCETQLIQRTTRKMGLTQDGQNF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +E+    +  +   +  +++  G +RI   +  G++ L  ++ EF  LYP I+I +
Sbjct: 68  YYYCAELLQLAKQAENSTRPDNIELHGNIRILAPVCFGEHDLLQHMGEFHRLYPKIRISI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L++  +D+  +  D AI+    +    +   KL     +  A+P YL+    PL    L
Sbjct: 128 QLEDSPMDLKDNKIDIAIQTGARM-DPRIDAIKLAQFDEYLVASPEYLEQHGSPLHPDML 186

Query: 187 DKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H  ++   + +PK  +  N      +    P  +C   NS L +M     G GI +LP
Sbjct: 187 QMHLWVLQASNQLPKRYQIQNSYGDNFKLNINPSTTC---NSNLGVMSLVKQGLGIGILP 243

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y+ +    + +LV I+ D       +Y  +P       K++AF +FI
Sbjct: 244 SYLAQPQIASKHLVHILSDYHLQEGLIYATHPFNDVIPPKVQAFIDFI 291


>gi|254821142|ref|ZP_05226143.1| Regulatory protein, LysR:LysR, substrate-binding [Mycobacterium
           intracellulare ATCC 13950]
          Length = 310

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FD D L VF  V    S + AA  L + +S++SR++S LE ++GIKL  ++   LT+T
Sbjct: 9   LPFDLDALLVFGKVVECRSLSKAAALLGMPKSTVSRKLSKLEADLGIKLLRKNTHQLTVT 68

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G K++     +  +    +  ++ S ++P G+LR+A  + +G +       +FL  YP
Sbjct: 69  DLGEKIYSHGVNILAEANGVRALVEGSKLEPQGELRVAIPVFVGIDYASRVGAKFLKQYP 128

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
             ++ + L +  +    D  D       P+Q S+LI RK+ ++ +   A+P +++   EP
Sbjct: 129 QSRLDIRLVDNVVHPVHDGFDVVFG-TGPLQDSTLIARKVFSLELFLCASPEFIRELPEP 187

Query: 181 LSI-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           ++   +LD    I  G  + +            R    P +   + N++    QY + G 
Sbjct: 188 ITAPTQLDTVPFIDCG--VSEGPRRLTVAKNKRRHELSPTVRA-RANNFQVCKQYILNGL 244

Query: 240 GIALLPDYIV-----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+  +P  I+     +D  ++V ++ +       VY  +P  L  +  + AF
Sbjct: 245 GVGAMPSQIIVTSELRDG-SIVPVLPEWRLEQLDVYMIHPFQLSFSTLISAF 295


>gi|325168409|ref|YP_004280199.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064132|gb|ADY67821.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 304

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 125/265 (47%), Gaps = 15/265 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VA +GSF+ AA    L+Q ++SRQ+S LE     +LF+R    L+LT +G ++
Sbjct: 6   ALRTFLRVAETGSFSAAALDCGLTQPAVSRQVSSLEEHYSTRLFHRSTNALSLTVEGEQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  +V   +E             SGK+RI+    LG   +   L  FL   P + + +
Sbjct: 66  ISMAQKVIDAVEALGEAAFADGAVASGKVRISLPAALGL-YISDRLPAFLASCPGLSVDI 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +   +  D+  +  D  +RL + +  SSLI R++        A P Y++    P  + E+
Sbjct: 125 VFCEQSSDLIGEGIDLEVRLGE-VSDSSLICRRIGWTAAFLVATPSYIQRRGTPGHLLEI 183

Query: 187 DKHNLITFGDLIPKCMEDFNWL----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H+ I +     +  E  +W     A ++R    PR   +  N+  ++ +  + G G+A
Sbjct: 184 PDHDCICYN----RGGEGRSWSFLNGADIERVKVTPR---MIFNNTGAVHRAALAGGGLA 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF 267
           +L   +V D+    R+++  + P+F
Sbjct: 237 VLSHILVGDDIAAGRLVK--VMPAF 259


>gi|254712036|ref|ZP_05173847.1| LysR family transcriptional regulator [Brucella ceti M644/93/1]
 gi|254715105|ref|ZP_05176916.1| LysR family transcriptional regulator [Brucella ceti M13/05/1]
 gi|261216813|ref|ZP_05931094.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261319680|ref|ZP_05958877.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|260921902|gb|EEX88470.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292370|gb|EEX95866.1| transcriptional regulator [Brucella ceti M644/93/1]
          Length = 306

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H
Sbjct: 8   MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 68  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHITPYLVPFMRANADLTVNMQ 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P +I++L 
Sbjct: 128 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP G      LQ  S   + +  + G GIA    +
Sbjct: 187 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTKSSEIVREAVLAGLGIAQRSTW 240

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 241 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|212709072|ref|ZP_03317200.1| hypothetical protein PROVALCAL_00105 [Providencia alcalifaciens DSM
           30120]
 gi|212687984|gb|EEB47512.1| hypothetical protein PROVALCAL_00105 [Providencia alcalifaciens DSM
           30120]
          Length = 314

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 138/289 (47%), Gaps = 16/289 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  VAR  SF+ AAE L +S + IS++I  LE  +G  LF+R+AR + LT +G  
Sbjct: 8   EDIRVFVTVARLMSFSQAAELLLVSPAYISKRIKLLEENLGQTLFFRNARAIQLTPEGKI 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + R +  +  +LE  Q ELQ    +  G+LRI+ +   G   L   +      YP + I 
Sbjct: 68  VLRSSELLLEELERMQGELQACRDEIRGELRISCSTGFGSTYLNPFILALRADYPILGID 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ IDI  +  D  I +   I S   I R+L   +    A+P Y++   +P   QE
Sbjct: 128 LTLTDRSIDIISENIDLDICIGGTI-SDQFIARRLARNNRVLCASPAYIQKYGQPSLPQE 186

Query: 186 LD-KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L+ KH+ I   +   +      W L      +     S L VN+     Q+C+ G GI L
Sbjct: 187 LEQKHSCIAIKE---RNQAPAIWKLEHQQESMTITPNSKLMVNNGEVAKQWCLSGEGILL 243

Query: 244 ------LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
                 LP+     +  LVR++      +  V+  Y  +L+N+  L+ F
Sbjct: 244 RSLWSVLPEL---QSGKLVRVLPQWHQGA-DVFAVYSRSLRNSASLRVF 288


>gi|33600934|ref|NP_888494.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33568534|emb|CAE32446.1| putative LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 306

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 29/296 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F V AR  SFT AA++L ++Q ++S+Q+  LE  VG++LF R  +GL LTE G    
Sbjct: 11  LQAFEVAARHNSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLRIRQGLVLTEAGRSYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +       ++E   +EL     +  G L +      G   L   L  F  L PDI ++ +
Sbjct: 71  KKIRAGLGQIEAATLELIAHQGR-GGTLHLTAMPTFGARWLIPRLAAFRRLRPDIHVEFL 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE---P 180
              +  D S    D A+R  + I   S    ++ R +V +             C E   P
Sbjct: 130 PHRQGYDFSTPELDAAVRFGEGIWPGSGADYIVGRDVVPV-------------CSERLVP 176

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLG 238
              Q  D  +L+ +  L+        W    ++   + R  +   + + Y  + Q    G
Sbjct: 177 GGCQ--DAADLLAY-PLLHHTSAMEGWREWFEQAGCDTRRSLEGARFDQYSLLSQAAAAG 233

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIF 291
            G+AL+P  +++D     ++   +  P       Y CYPE   ++  L+AFR ++ 
Sbjct: 234 FGVALIPRCLIEDELRDGKLHVPIQLPIRARQGYYLCYPEQKASSPTLQAFRGWLM 289


>gi|313106300|ref|ZP_07792544.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310879046|gb|EFQ37640.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 303

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 14/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+   F  V   GS + AA+ L  +++ +S  +  LE E+G+ L  R  R + LT+ G  
Sbjct: 5   DRFETFRAVVDCGSLSAAADTLGQTRAVVSFNLKRLEAELGVSLLSRSTRRMALTDAGEC 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   +V  +      + +    +  G LR+ TT + G   L   L+ F  L+P +Q+Q
Sbjct: 65  FYQRCVKVLDEARLAIDDARAEHGELRGSLRVTTTQEYGLRQLVPALQAFARLHPALQVQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   D+  +  D AIRL + ++ S+    +L +  + A A+P  L    EP     
Sbjct: 125 LSTSSLHADLIGERFDVAIRLGR-LEDSTHHAVQLASFEVLAVASPACLAALGEPPPTDL 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCVLGS 239
                L   G    +  +   W   V  P G       PR   L  ++  ++  + + G 
Sbjct: 184 ESLERLQNLGH--SRLADSLPW--QVRAPDGALRSYRGPRHPMLLADNAAALRAFALDGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+LPD++V+ +     L R++ D   P   V+  YP       K++AF +F+
Sbjct: 240 GIAVLPDWLVQADLRCGALQRLLADHGFPLQGVHAVYPPTRHLPSKVRAFIDFL 293


>gi|294665290|ref|ZP_06730583.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604926|gb|EFF48284.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 304

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V   GS T  A  L LS +  S+++  LE E+G++L +R  R L  T +G +
Sbjct: 5   DDIALFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTAEGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   L+    +L+ES+    G LR+  +   G+  +   L EF   +P ++I 
Sbjct: 65  LAERGRVLVEDLDALAEDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPRLRIS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L +  +D+     D AIR+  P++ S L+ R++        A+P YL+    P +  E
Sbjct: 125 AHLSDDLVDLVKQGFDLAIRI-GPLEDSGLVARRIADNRRTLAASPAYLQRHGTPRTPDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  +    +     +D   L T D  +   R+ S  + N    +    V G GIA+ 
Sbjct: 184 LAQHAGVLL--MGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAVH 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + + D   +  LV++M D   P+  +    P       +++AF +F+
Sbjct: 242 SYWHIADELRSGRLVQVMPDYPPPASQISAVMPARRLQPPRVRAFVDFL 290


>gi|283784873|ref|YP_003364738.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282948327|emb|CBG87912.1| putative LysR-family transcriptional regulator [Citrobacter
           rodentium ICC168]
          Length = 316

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 123/284 (43%), Gaps = 10/284 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +  +GS + AA QL+ +Q++ISR++  LET +G+KL  R    + LT+ G + +
Sbjct: 18  MRTFVRIVEAGSLSAAARQLNTTQATISRRLQSLETMLGVKLVLRTTHAMKLTDDGERGY 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +       +  L      P G LR+      GQ  L   L  FL  YP++ ++ +
Sbjct: 78  QHAKRIIDAWLALEDGLNVVEDDPVGTLRVRAPHAFGQQQLLSPLLSFLARYPNLSVEWM 137

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K +D   D  DCAIR+   +  ++ +   L  +     A P  L       S ++L 
Sbjct: 138 LNDKTVDFLRDNIDCAIRVGAEVDPAT-VSVLLAEVPRSVVATPELLARHPRISSPEQLS 196

Query: 188 KHNLITFGDLIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
               I           +   +    V  PI  PR+S    +S        + G G+A++ 
Sbjct: 197 TLPWIALNTFYQHSVSLSHRHSREAVSLPIA-PRLST---DSIYVARNAALAGLGVAIVS 252

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            + V ++     LV ++ D       V+  YP A     +L+ F
Sbjct: 253 SWTVAEDIAAGRLVELVADWQAAPLPVHLVYPWARYYPTRLRRF 296


>gi|206576879|ref|YP_002238101.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206565937|gb|ACI07713.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 288

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 128/275 (46%), Gaps = 17/275 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  L  F+ +AR GS + AA +L +  +++ R+I+ LE+ +G++L  R  R  TLT  
Sbjct: 1   MDWQDLHFFFALARCGSLSAAARELGVDHATVGRRIAALESSLGLRLTERLPRRTTLTGH 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +     E+Y   +  +I+ +    +P+  + I+ +  +  +L+   +  F   +P I
Sbjct: 61  GRIIASGADEMYRIADRIRIQARSLCAEPAVPINISASPAVAAHLIAPAIAGFTRKHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L   +  + ++   AD A+RL +P     L+ R++ T+    YA+  +         
Sbjct: 121 TLSLSGVSHHVLLNKSEADIAVRLERP-DDPDLMTRRIGTMRFGLYASQFW--------- 170

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            QE+ + + +    D     +    WL +    +   R    + +  ++  Q    G GI
Sbjct: 171 -QEIPQEDWVFIAYDSTLAHVTQQQWLES----LLNGRRVIFRASDLMAQQQAARKGLGI 225

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPE 275
             LP ++  ++  LVR+ E++ +P   ++   YPE
Sbjct: 226 VTLPCFMGDNDSELVRLPENLPSPVRNIWLVAYPE 260


>gi|36958597|gb|AAQ87065.1| possible transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 307

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 24/301 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VA +GSF+ AA  L L+Q ++SRQ+S LE  +  +L +R    + LT +G ++
Sbjct: 10  ALRTFLRVAETGSFSAAAVDLDLTQPAVSRQVSALEAHLNTRLLHRTTSAVALTAEGEQV 69

Query: 67  ----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                RV   V    ETT  E   +SV  SGK+R+     LG   +   L   L  +P +
Sbjct: 70  IPMALRVVEAVDALGETTCAE--GASV--SGKVRLTLPAPLGL-YVSDRLTGLLANHPGL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I   +  D+  +  D  +RL  P+  SSL+ R+L         AP YL+    P +
Sbjct: 125 SVEMIFREEPSDLVGEGLDLEVRL-GPVADSSLVCRRLGWTTAFLVGAPSYLRERVAPET 183

Query: 183 IQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
             +L  H  I +   GD       D     +V       RI+  L  N+ +++ +  + G
Sbjct: 184 PNDLRAHECICYSRAGDARTWSFSDGADEVSV-------RIAPRLIANNAVAVHRATLAG 236

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           SG+A+L   +V    +   LV +M D       +   YP       +++   +F+    R
Sbjct: 237 SGLAVLSHILVCPDIEAGRLVNVMPDFPPTRLPINVVYPSRRNMPPRVRVALDFLVEAVR 296

Query: 296 D 296
           +
Sbjct: 297 E 297


>gi|71281959|ref|YP_269996.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147699|gb|AAZ28172.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 316

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 102/174 (58%), Gaps = 1/174 (0%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V+  GSF   +E  ++++S+IS+QI  LE E+G+ L  R  R L+LT  GS++     ++
Sbjct: 13  VSELGSFVKVSELRNVNRSAISKQIGKLEKELGVHLLNRTTRSLSLTAAGSEMVNQAKQL 72

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              L  ++   +    +P G+L+I+++   G+  +Q  + +F   YPDI+I+L+L+++ +
Sbjct: 73  RDLLNNSKRLAENYHSEPRGELKISSSTLFGRQYVQQAVLKFQAQYPDIRIELLLEDRIV 132

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           D+  +  D   R+ +P + S+LI +++    +   AAP +++   +P +I +L+
Sbjct: 133 DLVGEGFDIGFRIGEP-KESNLIAKQIAQNRLLIVAAPSFIEKHGKPTTIPKLE 185


>gi|213966912|ref|ZP_03395062.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301381595|ref|ZP_07230013.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059651|ref|ZP_07251192.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131902|ref|ZP_07257892.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928234|gb|EEB61779.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 304

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 87/179 (48%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR  SF  A  ++ +S S++S  + GLET +G++L  R  R +TLT  G +L  + 
Sbjct: 14  FLAIARHQSFRKAGLEVGISASALSHAMKGLETRLGVRLLNRTTRSVTLTAAGEELQGLI 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S   + +      L     +P+G++R+    D  + LL   L  F+  YPDI++ L + N
Sbjct: 74  SAPVNDIGQALETLNRLRDEPAGRIRLNVLSDGAKLLLGPVLPVFIDRYPDIEVDLTVTN 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           K +DI  D  D  IR    +    + QR    +      AP YL+    P   ++L +H
Sbjct: 134 KMVDIIGDGHDAGIRFGGTVPEDMIAQRLSPDVAWAVVGAPAYLQRFGTPKHPEDLHQH 192


>gi|78065057|ref|YP_367826.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965802|gb|ABB07182.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 306

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 11/248 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V    SF+ AA +L ++ SS++R+I  LET++GI+L +R    L  TE G  L+
Sbjct: 9   LALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLLY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +L   Q +L     +PSG LR+      G+  L   L  F+  +P +Q+ L+
Sbjct: 69  GRATRMLAELRGLQEDLHSQHAEPSGLLRVDCPAPFGRRHLMAALAAFMQRHPALQVDLV 128

Query: 128 LDNKDIDISMDY----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L +  +D+         D A+R+  P++ +  +   L        A+  YL    EP S 
Sbjct: 129 LTDSMVDLQGARLGSDVDLAVRI-GPLEDTRFVATVLAPQRRVLCASAAYLARRGEPESP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H+ + +    P     F     V     +PR    + N   ++++  + G G+A 
Sbjct: 188 DALAGHDCLAWHGAPPPGAWRFGERRHVP---AQPR---FRSNHSEALLEAAIDGLGLAH 241

Query: 244 LPDYIVKD 251
           LP ++  D
Sbjct: 242 LPTWLAGD 249


>gi|146343678|ref|YP_001208726.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146196484|emb|CAL80511.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 312

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 138/304 (45%), Gaps = 24/304 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +GSFT AA  L + +SS++RQI+ LE ++G+ L  R  R L LT+ G    
Sbjct: 7   VRVFLEVVSAGSFTTAARTLKIPKSSVARQIARLEDDIGVMLLARTTRTLELTDHGRTFL 66

Query: 68  RVTSEVYHK-LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +    +E + + ++      SG L +  +   G+  L  +L  F   +P+I++ L
Sbjct: 67  PYARRLLDDGIEASNV-IRSHRDGASGLLTVTASSTFGRMFLAPHLSTFRKQHPNIRVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L    + I +  AD AIRL  PI   +L  +    +     AAP Y+K         +L
Sbjct: 126 KLTATKLVIGVGQADIAIRL-GPIVDPNLGVQSFGRMEFCLVAAPAYMKGRPSVTKPMDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSG 240
            +H LI   +L P   ++   L        + ++ C++    + I         C+   G
Sbjct: 185 ARHELI---ELRPPASDNQLELHK------DGKLQCVRCVPAMVIDDPDTAKVVCLTAGG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           IA +P ++V +   +  LVRI+ D       +   Y + +  + +++A+  F+     + 
Sbjct: 236 IATVPTFLVANEIRDATLVRILPDWTLAPAPISVVYAKQIAPSLRVRAYLEFLASTIGQT 295

Query: 295 RDWK 298
           R W+
Sbjct: 296 RPWE 299


>gi|238894854|ref|YP_002919588.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547170|dbj|BAH63521.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 310

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 115/264 (43%), Gaps = 10/264 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D+  L++F  V  + SF+  A +  +S S ISR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   SVDFRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  +    Q  LQ+ +  P G +RI   +  GQ  +   L E    +P 
Sbjct: 66  AGRLFAASARELLGQYADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELAARHPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q  L L +  ID   D  D   R+   +  +    R   +   +  A+P Y+     P 
Sbjct: 126 LQFDLTLTDDFIDPHRDATDILFRISS-LPDAGYHARVFGSQRYYLTASPEYVSRYGSPT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S + L +H  + +G           WL     +  +  P    +  N+  +++   + G 
Sbjct: 185 SPEALHQHRTLVYG----GSQGANRWLFRQREEAWVHYPLTPLMTSNNADALLTSAIGGM 240

Query: 240 GIALLPDYIVKD---NPNLVRIME 260
           GI L PD++V +   N  LV +M+
Sbjct: 241 GIVLFPDWMVSEALHNGTLVTLMD 264


>gi|241206048|ref|YP_002977144.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859938|gb|ACS57605.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 302

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 136/294 (46%), Gaps = 17/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +RVF  V    SFT AAE   L +S+++  + GLE  +G++L  R  R ++ T  G 
Sbjct: 4   FDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKGLEARLGVRLLQRTTRHVSPTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E  +     +  KP G LR+     L ++ +  +L  FL  YP+I+ 
Sbjct: 64  AYYQRCLSILADIEGAEGAF--AGAKPKGLLRVDVHGTLARHFVLPSLPSFLETYPEIEF 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R+  P   S ++ R++  +     A+P Y+     P    
Sbjct: 122 YMSEGDRLVDLVREGIDCVLRVGTP-GDSDMVARRVAMLDEVTLASPDYIATRGLPQHPH 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L  H ++ F     G L+P    +F    TV R +  P  + + VN+  S +    +G 
Sbjct: 181 RLAGHRMVGFRSSSTGTLLPL---EFIVDGTV-RNVTIP--ATVAVNAAESYISAARMGL 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  +P Y  + +     L+ +++D       V   YP   + + +++ F +++
Sbjct: 235 GMIQIPRYHAEKDLAEGTLIHVLQDFPLTPTPVSLLYPRNRQLSPRVRVFIDWL 288


>gi|121606585|ref|YP_983914.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595554|gb|ABM38993.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 321

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 28/293 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  V   GS T AA    ++ + + R++  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QLESFVSVVARGSLTAAALAEGVAPAIMGRRLDALEERLGVKLLVRTTRRITLTHEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L   +  +    VK SG LRI      G+  +   + +F   + D+ I L
Sbjct: 66  LEDCQRLLADLANAEASVSAGGVKASGHLRITAPAGFGRRHVAPLVAKFREQHADVTITL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D++ +  DCA+R+   +  SSL+  +L        A P YL+    P    EL
Sbjct: 126 NLGDRVVDLAGEGFDCAVRV-GDLPDSSLVSVRLADNRRLCVATPRYLQLHGTPRHPGEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCL---QVNSYLSIMQ--------- 233
            K + +T   L  +  +   W   V R   G  R   L   QV+    I+          
Sbjct: 185 AKFDCLT---LSSEASQTRGWAFRVPRNAQGRQREGVLADAQVDGDSEIIHLKPGGPLDC 241

Query: 234 --------YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
                   +C+ G GIA    + V+       LV ++ED   P+  +Y  +P+
Sbjct: 242 SDGQVLHDWCLAGYGIAWRSTWEVESEIAAGRLVAVLEDFAAPANGIYAVFPQ 294


>gi|121594680|ref|YP_986576.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120606760|gb|ABM42500.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 317

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 135/298 (45%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  VA  G F  A   L + +S +SR+++ LE  +G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVAERGGFAAAGRALGIPKSRLSRRVAELEARLGVRLLQRTTRTLSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +    +  Q  + +   +P G +R+   + L Q ++   + +FL  +P ++
Sbjct: 63  EAYLRHCQAMLDSAQAAQDTVDQVQTEPRGTVRVTCPVTLAQTVVAELMPQFLQRHPQVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +++  +  D A+R+R  ++ S S++ ++L  + +   A+P  L+    P S
Sbjct: 123 LEMQVTNRVVNVVEEGVDVALRVRPTLEDSGSMVVKRLDEVRLLLVASPEQLRRQGTPTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235
           +++L         D +     D      +  P G        PR      +  L++    
Sbjct: 183 LRDL------ALLDTLAMSAADGRASLRLIGPEGREETVHFTPRYVA---DDLLTLKFAA 233

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G+G+  +PDY+         LV ++     P   V+  +      +  +++F +F+
Sbjct: 234 LAGTGLCWMPDYMCMSELQEGRLVHLLPQWTQPRSVVHAVFASRRGLSPAVRSFLDFL 291


>gi|119946957|ref|YP_944637.1| transcriptional regulator, substrate-binding, LysR family protein
           [Psychromonas ingrahamii 37]
 gi|119865561|gb|ABM05038.1| transcriptional regulator, substrate-binding, LysR family protein
           [Psychromonas ingrahamii 37]
          Length = 306

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 9/250 (3%)

Query: 1   MSFDWDKLRVFYVVAR---SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   V AR    GS + AA+ + LS++ +S  I  LET + IKL  R  R +
Sbjct: 1   MDISFEQLKSMIVFARVVEQGSLSAAAKHIGLSRAVVSYHIKKLETHLAIKLLNRSTRSI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLTE GS+ ++    +  +      +++    +P G L+I   ++LG  ++   L  F  
Sbjct: 61  TLTEAGSQYYQRCRVIAEQASAAHQQIENLKNEPEGLLKITCPVNLGLQIIVPALNAFRK 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP I + L L ++ +++  +  D A+R   P+  S L   KL ++      AP Y K  
Sbjct: 121 LYPKIDLDLKLTDEVVNVIKEGIDLAVR-GAPLPDSGLQASKLFSLSTCLCGAPAYFKKH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P S  +L  H  + +  L    +E    L+  +R         +  N+  +   +   
Sbjct: 180 GYPTSPAQLTAHEWVIY-KLTSSTIE----LSKGNRSFSIKVKGGISTNNAAARTAFVEG 234

Query: 238 GSGIALLPDY 247
           G G+  +P Y
Sbjct: 235 GHGLGRIPTY 244


>gi|170720415|ref|YP_001748103.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758418|gb|ACA71734.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 305

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 133/287 (46%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F+++A+ GS    A +L ++  ++S++++ LE  +G++L  R  R ++LT +G    
Sbjct: 7   LGFFHLLAKQGSLAATARELGVTPPAVSKRLAALEARLGVRLVNRTTRSMSLTAEGELYV 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +++  +  +     +P G +R+  ++  G+  +   L +F   YPDI++QL 
Sbjct: 67  AHAARILAQVDEVEQLIGRHRAEPKGLIRVNASLGFGRRYIGPALADFYARYPDIEVQLE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D++    D  IR    +  +S   RK+ +      A+P YL+    P  + +L 
Sbjct: 127 ISDHPLDLASHGFDLGIRF-GTLPDASFHARKIASNRRLLCASPLYLEKHGAPTKLSDLA 185

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +HN I    +  P  +  F           +  +SC   N     + + + G GI L  +
Sbjct: 186 RHNCIFLRQNESPYGVWTFTNGGRTQNIKVQGALSC---NDGEVALNWALQGHGILLRAE 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +     +  L  ++ED       VY  YP+ L  + +++   +F+
Sbjct: 243 WDIARYVRSGRLRLLLEDQTPTRADVYAVYPQQLHLSARVRRLIDFL 289


>gi|170725685|ref|YP_001759711.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169811032|gb|ACA85616.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 313

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSAAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    +     +   +    G L++  +   G   +   L EF+  +P++++Q
Sbjct: 66  LYTQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMTTHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y++   +P   ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLVASPDYIEKHGQPDRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    V G G+  L
Sbjct: 185 LVDHNCLVYQG---EWHEHSVWQFKQGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVYL 241

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV ++ED  +T    +   YP       K+ AF +FI
Sbjct: 242 ASYLLEDEIAKGTLVPLLEDWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|187478146|ref|YP_786170.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115422732|emb|CAJ49260.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 303

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 121/269 (44%), Gaps = 13/269 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA++ +F+ AA+ L + +S++SRQ+S LE  VG++L  R  R + LT  G    
Sbjct: 1   MELFVEVAKTRNFSRAADNLGIPKSTLSRQVSELERAVGLQLLSRTTRKVELTAAGQLYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +    ELQ+    PSG LR+    D G   +  +  EF   YP++   L 
Sbjct: 61  DRCQRIVTEAQAAHEELQKLLETPSGPLRVNLPADFGTEFMAESFVEFSRRYPEVDFYLD 120

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L + +  +      D A+++ + +  S+ I R L  +    YA+P YL     PL   +L
Sbjct: 121 LASPEHAERVFRSCDVALQIGE-LPDSTQIARLLGMLPAGLYASPDYLDRHGRPLHPDDL 179

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSGI 241
            KH  + F   +        W  T     G+ +          VNS   +     LG+GI
Sbjct: 180 AKHECLEF--RVGHAGRVTRWPLTN----GQQQFEITPGRRYSVNSVSMLRSLARLGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVY 270
           A+L     +D  +L +++ D     F VY
Sbjct: 234 AILAARHCEDGESLEKVLPDWHAGPFPVY 262


>gi|330811280|ref|YP_004355742.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379388|gb|AEA70738.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 293

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 133/281 (47%), Gaps = 7/281 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD L+VF  VA+S + T A   L +S S++SR+I+ LE  +G  LF +   G  LTE 
Sbjct: 1   MDWDDLKVFIFVAKSNNVTEAGISLKVSTSTVSRKIAALEESLGTVLFSKKTSGYFLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L  +  E   + +  + ++ +   + +G++RI     +G +L+   L  F   +P+I
Sbjct: 61  GRALLPLALETEERFKLIERQMSQPGDRMAGQVRIDCPELMGTHLIIPQLAVFHDQHPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
               I       ++  ++D  IRLR+P ++ +   R++ T+    + +  Y      P  
Sbjct: 121 SFDFINSAVSSKLTQSHSDIIIRLRRP-ENGNFTMRRVGTLKQGLFCSQAYADANGLPAE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H+LI + + +   M    WL   +   G+ R+  ++V++  + ++      GIA
Sbjct: 180 PADLKHHSLIGWTEEM-SYMPLAQWL---NEMAGDQRL-WMRVSNLNAQLKAVEANLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            LP Y V     L +++ +    S  ++    +A +   ++
Sbjct: 235 ALPIY-VGHQSGLCQVLANRRARSSEIWLLRNQATQGVSRV 274


>gi|330808821|ref|YP_004353283.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376929|gb|AEA68279.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 88/184 (47%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VAR  SF+ A  ++ +S S++S  I GLE  +G++L  R  R +TLT  G +L  + 
Sbjct: 14  FLAVARHSSFSRAGVEVGISASALSHAIKGLEARLGVRLLNRTTRSVTLTAAGEELLALI 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           SE   K++     L +   +P+G++R+    D    LL   L  F   YPDI++++   N
Sbjct: 74  SEPVDKIDQAIELLNKFRDEPTGRIRLNVFSDAALLLLAPVLSTFAHRYPDIEVEVSTTN 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             +DI     D  IR    +    + Q     +       P YL  C  PL  ++L +H+
Sbjct: 134 SMVDIVEGGFDAGIRYGATVPEGMIAQSLSPPVRWVVVGTPDYLDRCGMPLHPEDLKQHS 193

Query: 191 LITF 194
            + F
Sbjct: 194 CLRF 197


>gi|293606621|ref|ZP_06688977.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815006|gb|EFF74131.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC
           43553]
          Length = 315

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 126/263 (47%), Gaps = 12/263 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   +F  ++++ SF+  A Q  +S +S+SR I+  E E+ +KL  R  R + LTE 
Sbjct: 2   DRLRAMELFLSISKTESFSETARQFGVSATSVSRMITEFENELNVKLLLRSTRQVVLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +    +   +      + E    P G LR+ + +  G  +L   +  F   YPDI
Sbjct: 62  GQEYAQQLESILWNINEAHRNITEIRAAPKGILRVHSRMMFGLGVLPPLVAAFRQQYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+L     D+  +  D   R+  P++ + L +R L        A+P YL     P  
Sbjct: 122 HIELVLSEAKTDLRRNNFDIDFRISPPVE-AGLKRRILFKSERFLVASPAYLAKHAAPAK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             ++ +H+ + +  L+P   + + W       I E  I    V N+ +++++  +LG GI
Sbjct: 181 PGDIAQHDCLAY--LLPG--DQYCWRFKQGEAIEEVLIKPRHVTNNGVALLELALLGEGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMED 261
           ALL DY V ++     LVR+  D
Sbjct: 237 ALLDDYTVHNDISRGTLVRLFPD 259


>gi|289627720|ref|ZP_06460674.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649504|ref|ZP_06480847.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866270|gb|EGH00979.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 302

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 130/279 (46%), Gaps = 9/279 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +  SGS + AA+    S +S+ R ++ LE+ +G++L  R  R + LT++G +  R T
Sbjct: 10  FVRIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTDEGEEYLRWT 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +    +  +  L        G LR+   ++ GQ  +   +  FL  + +I ++L L++
Sbjct: 70  RRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLCEHQNINVELNLND 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + + +  +  D A+R+   +  S+++ R+     + + A+P YL+      + + L +H 
Sbjct: 130 QIVPLLDERLDLALRIGH-LPDSAMVARRTGATRLVSCASPGYLRTAPLLDTPKSLPEHA 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            IT      +          +   I  PR+ C QV +       CV G G+  L  Y V 
Sbjct: 189 CITLASHGRQWYFRHQGKELIQDII--PRLVCNQVRAA---SLACVQGLGVTRLMHYQVA 243

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           D   +  L+R++ D  T    +   YP AL+ + ++KAF
Sbjct: 244 DELADGRLIRVLTDFETADLPIQLVYPHALQLSPRVKAF 282


>gi|294012147|ref|YP_003545607.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292675477|dbj|BAI96995.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 302

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 122/264 (46%), Gaps = 13/264 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D+D   +F  +   G    A  +L +S + +S+++  LE  +G +L +R  R L LT
Sbjct: 1   MDPDYD---LFATIVDEGGMAAAGRRLSISPAMVSKRLVRLEERLGTRLIHRTTRRLALT 57

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +LH     +   LE  +  +  +S + +G LR++     G+  +   L  FL  +P
Sbjct: 58  PAGERLHEDLRAIMAALEEAERRVSGASAEAAGTLRVSAPTSFGRMHVAPYLGRFLEAHP 117

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++ L +   D+    AD AIR+      S L   +L T      AAP YL     P
Sbjct: 118 KVRLRIDLSDDYADLLATRADLAIRITAD-PGSGLAAHRLATNRRVLCAAPDYLARFGVP 176

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L +H L+     +P  +      ATV+   G+   S ++ NS   + +  + G G
Sbjct: 177 ETVPDLRRHRLLAADGQLPWRLIGPKGAATVE---GD---SHVRTNSSEMVRELALSGVG 230

Query: 241 IALLPDYIVKD---NPNLVRIMED 261
           IAL   + + D     N+ ++M D
Sbjct: 231 IALRSLWDISDALERGNVRQVMPD 254


>gi|238792503|ref|ZP_04636136.1| transcriptional regulator [Yersinia intermedia ATCC 29909]
 gi|238728138|gb|EEQ19659.1| transcriptional regulator [Yersinia intermedia ATCC 29909]
          Length = 317

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 3/192 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++ VF  V  +GSF+  A QL +S S+ISR +S LE  +  +L +R  R L L+E G +
Sbjct: 11  SEMAVFVKVVETGSFSVVARQLGVSPSAISRSVSRLEKALATRLLHRTTRKLRLSESGEE 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + +    + +   +      + + +P G +RI+    +G+ ++  ++ EFL  +  I +Q
Sbjct: 71  VFKRCHMMLNAANSVMEVSGQYNQEPEGLIRISVPKAVGRFVVHPHIPEFLRRHSKIDVQ 130

Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           LILD++ +D+  +  D +IR+  +P     +I R+L+TI     A P YL     PL   
Sbjct: 131 LILDDRYVDLIEENVDLSIRITDQP--PPGMIGRQLMTIEHLLCATPEYLSIHGVPLHPH 188

Query: 185 ELDKHNLITFGD 196
           +L  H+ I  G+
Sbjct: 189 DLAHHSCIYLGE 200


>gi|167576744|ref|ZP_02369618.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 300

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 132/298 (44%), Gaps = 22/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-- 63
           + LR F V AR  +F  AA ++ ++Q ++++Q+  LE  +G++LF R  RGL LT  G  
Sbjct: 9   NALRAFEVSARHLNFRAAAGEIGVTQGAVAQQVRHLEDTLGVRLFERLPRGLALTADGLA 68

Query: 64  --SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             + + R  + +     T ++  + SSV       I+TT       L   L  F   +PD
Sbjct: 69  YFADVRRALNLIGDA--TDRLAKRRSSVT------ISTTPSFASRWLIPRLASFGDEHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++I D++      D  D AIR  KP     L+ R L  + +HA  +P  L       
Sbjct: 121 VDIRVIADSQFATFQGDGVDLAIRYGKPPFGKGLVARLLFPVDIHAVCSPALLAPSGARA 180

Query: 182 SIQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L    L+    DL P+ +      A VD P   PR +     S L+I    + G G
Sbjct: 181 RARDLAGQVLLHDAHDLWPEFLAALPERAAVD-PAKGPRFN----QSSLAI-DAAIAGHG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +AL  D +V    +   L R+ +  +  S   Y  YP   +    +     ++  +AR
Sbjct: 235 VALASDQLVARDIEAGRLRRLFDFALPLSIGYYIVYPNEPRRPDDIAKTEAWLIREAR 292


>gi|152972539|ref|YP_001337685.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150957388|gb|ABR79418.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 304

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 6/275 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS + AA  L++  +++SR I  LE+ +G++L  R  R LTLT+ G         +  ++
Sbjct: 17  GSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTDAGVDYVAAARRILEEV 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E  + +      +P G+L I+     G+  +   + EF+  YP I+++L+L +++ D+  
Sbjct: 77  ENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPLIRVRLLLSDRNADLVS 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           D+ D A+R+   +  SS++  +L T+ + A A P  L    EP   ++L    +I     
Sbjct: 137 DHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQRPRDLAALPIIRIESP 195

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254
           +P     F      D+ I  P +  L V +  S      LG G+A L  Y   D   +  
Sbjct: 196 MPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGVARLLHYQALDGLRHGE 253

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L  ++E+V      V+  Y        KL+ F +F
Sbjct: 254 LRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDF 288


>gi|144897675|emb|CAM74539.1| transcriptional regulator, LysR family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 302

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 137/304 (45%), Gaps = 21/304 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ A   L L +S +SR+++ LE  +G++L  R +R   LTE G
Sbjct: 3   DLNDLYYFTQVVEHGGFSAAGRALGLPKSKLSRRVAQLEDGLGVRLLQRSSRRFALTEFG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R    +  + E  +  +Q S  +P G +R++  + L Q+ +   +  FL  +P ++
Sbjct: 63  QAYYRHCRAMVIEAEAAEEAVQHSQAEPQGLIRLSCPVALAQSKVGPIIARFLADHPRVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P++ S LI + L     +   AP  L     P S
Sbjct: 123 VHLEATNRRVDVIEEGFDLAIRVRMPPLEDSGLIIKVLERHQGYLVGAPDLLDRLGRPQS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVL 237
             +L    L + G  + +  +  +W        G     +PR   L  +  +++      
Sbjct: 183 PDQLSA--LPSLG--MTRAGDRHSWQLVDAAGEGIEVAHQPR---LVTDDMVALRHAARA 235

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI  LP  +V ++     ++E ++T    P   ++  YP      G + A R F+   
Sbjct: 236 GIGIVQLPSLMVAEDLR-AGVLEKILTAWTPPRGLIHAVYP---SRRGLVPAVRLFLDAL 291

Query: 294 ARDW 297
           A DW
Sbjct: 292 AADW 295


>gi|187918865|ref|YP_001887896.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717303|gb|ACD18526.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 303

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 10/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A   SFT AA    ++ +++SR ++ LE  +G++LF R  R + LT+ G +  
Sbjct: 13  IELFCLAAELESFTEAANAASVTPAAVSRTVARLEERLGVRLFVRTTRQIRLTDAGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +L   + E       P+G LRI+     G   +   L EF   YP + ++  
Sbjct: 73  EQCRLALAQLAEAEREATGQQTAPTGVLRISMPTPYGHYRVLPLLAEFRQRYPGVTVETH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID   +  D AIR   P   S LI R +    +   A+P YL+   +  +  +L 
Sbjct: 133 LSNRNIDFGEEGFDLAIRGAAP-GDSGLIARTIEDAELVVVASPAYLRGAAKLKTPDDLV 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS--YLSIMQYCVLGSGIALLP 245
            H+ + +   +P    +  WL  V+  + E   S    +S   L+       G+GI    
Sbjct: 192 HHDCVQYA--LPSTGRNLPWLFKVEDEVVETMTSGGYTSSGDVLAGATLARHGAGIFQTY 249

Query: 246 DYIVKDNPNLVRIMEDVITP----SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +IV+ +      +++++ P    S      YP A   + ++++F +F+  K
Sbjct: 250 RFIVEKD-IAAGTLKELLIPYGGCSRPFVLLYPHARHLSSRVRSFVDFLMEK 300


>gi|167644427|ref|YP_001682090.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167346857|gb|ABZ69592.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 310

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 137/297 (46%), Gaps = 21/297 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VA   SFT AA+ L + +  +S  +  LE +VG  L +R  R + LTE G  
Sbjct: 5   EALQIFARVAEMASFTKAAKSLGIHKGRVSTAVRQLEADVGAGLLHRTTRAVQLTEDGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++    E  +           GKLR+    +L ++ L   + +F+  +P+++++
Sbjct: 65  FYTRARDLLADAEDLRSMFASEHTSLRGKLRVDLPTELARSTLIPAIPQFMAAHPELELE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC +R+  P+   +LI R +  + M   A+P YL     P ++++
Sbjct: 125 ISSTDRRVDLVQEGFDCVVRI-GPVVDETLIARPIGALRMVNAASPAYLARRGTPRTLED 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-----CLQVNSYLSIMQYCVLG 238
           L    H ++ +   +    + F W    + P G+   S      L VNS  +     + G
Sbjct: 184 LVSQGHAIVHYTPTL--GAKPFGW----EYPDGDDYSSLALPGALSVNSVQTYHAAGLAG 237

Query: 239 -----SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                +G+A +  Y   ++  +V+I+ D+      V+F        + +++A  ++I
Sbjct: 238 VGLVQAGLAAMSPYF--ESGEMVQILPDLPPEPLQVWFVVAHRRNMSRRVRALMSWI 292


>gi|91782924|ref|YP_558130.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686878|gb|ABE30078.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 301

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 5/191 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++ VF  VA++GSFT AAE++  S+S++ + +  LE  +G +LF R  R + LTE G  
Sbjct: 10  NEIAVFVAVAQTGSFTRAAEEIGSSKSNVGKAVQRLEARLGSQLFQRTTRAVRLTEDGET 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQG--NLKEFLLLYPDIQ 123
                 E    L   + +L     +P+G+++I      G+ LL     L+E    YP + 
Sbjct: 70  YLLAAQEALESLREAEQQLASRRAEPAGRVKIDLPAGFGRLLLPSFIQLREK---YPKLT 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ L ++  D   +  D  +R+      S    RKL  + +  YA+P YL    +  ++
Sbjct: 127 VEMALTDRMSDPVGEGWDIVVRIGALPDDSEFTVRKLCDLRLGLYASPEYLARRGDVKTL 186

Query: 184 QELDKHNLITF 194
            EL  H+ I F
Sbjct: 187 AELTDHDAIVF 197


>gi|332993483|gb|AEF03538.1| LysR family transcriptional regulator [Alteromonas sp. SN2]
          Length = 300

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 125/286 (43%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A+ GSF  AAEQL +S  +++R I+ LE ++  +LF+R  R + LTE G +  
Sbjct: 7   MSVFAEAAKLGSFVSAAEQLSMSAPAVTRAIATLEAQLNTRLFHRTTRRIRLTEAGIQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +  ++  +    + P G L +   +  G+  +   + +FL  +P++ +   
Sbjct: 67  NDVQRILADIAQSEAAIAGVQLLPKGTLSVTAPVLFGELYITPIIAQFLRDFPEVNVHGY 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+     D AIR+ KP + S L    +  +     A+P YL N     + ++L 
Sbjct: 127 MYDNIVDLLDTKIDVAIRISKP-KDSGLYATTVGYVRKVTVASPDYLANAPNLKTPEDLK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+   D     + +F           +PR  C Q  S +S  +    G GI  L  Y
Sbjct: 186 HHTLLYPSDFKEPPVWNFKRNGKTVAIRLQPRFECNQNRSTISAAKS---GLGITRLMSY 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V D      LV ++++       +     E   N  K+K F  ++
Sbjct: 243 QVADAIEKGELVSVLDEFNDEKLPIQVVSLEGRHNLEKVKKFVEYV 288


>gi|254374695|ref|ZP_04990176.1| transcriptional regulator [Francisella novicida GA99-3548]
 gi|151572414|gb|EDN38068.1| transcriptional regulator [Francisella novicida GA99-3548]
          Length = 296

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLTEQ 62
           ++D + +F  +   G+FT  A+QL++SQS++SR+I  LE  +  KL  R++RG + +T +
Sbjct: 2   NFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEVTTE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+   S +  +   T  +   +S +  G LR+        NL+   L  F   YP++
Sbjct: 62  GQSLYNNFSYIEEQAVVTFQKWINNSKQIKGILRVGVPKLFFDNLVAPKLDTFYTRYPNV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+        +D+  D  D AI  +KP  ++  I + L+      YA+  Y++    P +
Sbjct: 122 QLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTI-KTLLKSKNKLYASKKYIQEKGVPET 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS 221
           I+EL+ H+++ F D   KC       + +D    E  IS
Sbjct: 181 IKELENHSIVGFIDN-DKCQNALVGFSELDNSSLEVNIS 218


>gi|56708345|ref|YP_170241.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670816|ref|YP_667373.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|134301616|ref|YP_001121584.1| transcriptional regulator, LysR family protein [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|208779950|ref|ZP_03247294.1| pseudin antimicrobial peptide family protein, putative [Francisella
           novicida FTG]
 gi|224457469|ref|ZP_03665942.1| transcriptional regulator, LysR family protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370966|ref|ZP_04986970.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254373238|ref|ZP_04988727.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|254875167|ref|ZP_05247877.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604837|emb|CAG45918.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110321149|emb|CAL09301.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|134049393|gb|ABO46464.1| transcriptional regulator, LysR family protein [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|151569208|gb|EDN34862.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis FSC033]
 gi|151570965|gb|EDN36619.1| LysR transcriptional regulator family protein [Francisella novicida
           GA99-3549]
 gi|208744405|gb|EDZ90705.1| pseudin antimicrobial peptide family protein, putative [Francisella
           novicida FTG]
 gi|254841166|gb|EET19602.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159582|gb|ADA78973.1| transcriptional regulator, LysR family protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 296

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLTEQ 62
           ++D + +F  +   G+FT  A+QL++SQS++SR+I  LE  +  KL  R++RG + +T +
Sbjct: 2   NFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEVTTE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+   S +  +   T  +   +S +  G LR+        NL+   L  F   YP++
Sbjct: 62  GQSLYNNFSYIEEQAVVTFQKWINNSKQIKGILRVGVPKLFFDNLVAPKLDTFYTRYPNV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+        +D+  D  D AI  +KP  ++  I + L+      YA+  Y++    P +
Sbjct: 122 QLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTI-KTLLKSKNKLYASKKYIQEKGVPET 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS 221
           I+EL+ H+++ F D   KC       + +D    E  IS
Sbjct: 181 IKELENHSIVGFIDN-DKCQNALVGFSELDNSSLEVNIS 218


>gi|291562442|emb|CBL41258.1| transcriptional regulator, LysR family [butyrate-producing
           bacterium SS3/4]
          Length = 298

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 147/298 (49%), Gaps = 32/298 (10%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           ++FY VAR G+ + AA++L++SQ +IS+ IS LE  +GIKLF R++RG+ LT +G+ L +
Sbjct: 9   KIFYEVARCGNISRAAKELYISQPAISKAISKLEESLGIKLFSRNSRGVQLTREGAILFQ 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL-- 126
             +  +  +   + EL+       G L+I  +  L + +L   LK F+  YP + I +  
Sbjct: 69  HVNTAFDSIGRGERELKRIHDFHIGNLKIGVSNTLCKYVLLPYLKGFIGKYPHVNIAIES 128

Query: 127 --------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
                   +LD + IDI +        + +P     L  + ++ I       P YL+N  
Sbjct: 129 QSTYQTLDMLDARKIDIGL--------VAEPKSKKGLHFQPVMEISDAFVCTPAYLEN-- 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYC 235
             L ++E +  ++   G+++     + +    VD  + + +I     L+      ++++ 
Sbjct: 179 --LHLREGNDTDIFKTGNIMLLNRSNMSR-KHVDAYLADNQIEINQILETTDMELLIEFS 235

Query: 236 VLGSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNF 289
            +G GI  ++ D++  D  N  L+ I  D+  P   + F C+P+ + +T  L+ F  F
Sbjct: 236 RIGLGIGCVIKDFVEDDLKNGTLIEIPLDIPIPKRVIGFCCHPQDMPDT--LREFMEF 291


>gi|222106718|ref|YP_002547509.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221737897|gb|ACM38793.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 299

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 22/292 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR+GS T AA +L L+QS++SRQI  LE ++G++LF+R  + + LT  G+   
Sbjct: 14  LSAFEAAARTGSVTAAARELSLTQSAVSRQIKALEEQLGVELFHRERQTIRLTAGGNIYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +    + T  + L+ +     G L +A     G   L   L  FL  +P I I L+
Sbjct: 74  REIRDALRIISTASLTLKANPF--GGTLNLAILPTFGTRWLAPRLPGFLSRHPGITINLV 131

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSS--SLIQRKLVTIHMHAYAAPHYLKNCR--EPLS 182
                 D  ++  D AI       Q +  SL++ + V        +P      R   PL 
Sbjct: 132 TKLSYFDFRLEPVDAAIHFGLADWQGAEMSLLRSETVI----PACSPELRDTYRFQTPLD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++    +L T  D   +      WLA+ D  +   ++  +  + + +  Q  + G G+A
Sbjct: 188 LRQAPLLHLTTRPDAWER------WLASND--VQSDQVRGMLFDQFATAAQAAMAGLGVA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LLP++++++   +  LV+ ++  +  +   Y  +P    +   L+AFR++I 
Sbjct: 240 LLPEFLIEEEMASGRLVKAIDRPMQSTEAYYLVWPNERGSHPPLQAFRDWIL 291


>gi|163792702|ref|ZP_02186679.1| Transcriptional Regulator, LysR family protein [alpha
           proteobacterium BAL199]
 gi|159182407|gb|EDP66916.1| Transcriptional Regulator, LysR family protein [alpha
           proteobacterium BAL199]
          Length = 302

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 19/277 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  V  +G+ T A   L +S ++ S+++  LE ++ ++L  R  R ++ TE G  L+
Sbjct: 7   LRLFIRVVDTGNITSAGRSLGMSSTAASKRLQDLEADLRVRLLDRTTRSVSATEAGRHLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +   L+    +  +   +P+G LR+      G   +   L  F   YPD++I L 
Sbjct: 67  ERVSVLLDDLDGALRQAGDMQSRPAGVLRVTARRSFGMLHVLPALPSFRETYPDVEIDLT 126

Query: 128 LDNKDIDISMDYA-DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L  + ++I+     D  IRL +P++  SL+  +L +      A+P Y      P+   +L
Sbjct: 127 L-TEIVEIAPTRGVDLVIRLGEPVE-KSLVAHRLASAERVMCASPAYFAKFPPPVGPDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           D+H  + +     +  E   W+        E  ++  L+ NS  ++    + G G+ALLP
Sbjct: 185 DRHACLGYR----RDFEPSVWVFETASGRKEVTVAGPLRSNSGEALRAALLDGIGLALLP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKN 279
            ++V  +     LVR + D+         CYPE  + 
Sbjct: 241 RWMVAGDLRAGTLVRCLGDIP--------CYPEGYRE 269


>gi|148549065|ref|YP_001269167.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513123|gb|ABQ79983.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 312

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 128/306 (41%), Gaps = 38/306 (12%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L  F   A  GSF  AA +L L+ +++ + ++ LE  +G++LF R  R LTLTE G 
Sbjct: 6   FSALECFIRSAEVGSFAEAARRLSLTPAAVGKHVAQLEARLGVRLFQRSTRKLTLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     S+ +  ++     L  +  +P+G LR++     G+  +   L EFL  YP I  
Sbjct: 66  RFLGEVSDSFRTIQYAVANLASAEGQPAGSLRVSMGTVFGRLYVLPLLGEFLRRYPAITP 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+     D AI     +    ++ RKL   H    AAP YL+        Q
Sbjct: 126 DWHFDNRQVDLIGQGFDAAIGGGFEL-PPGVVARKLTPAHRVLVAAPAYLQRHAPIEDPQ 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLAT----VDRPI--------GEPRISCLQVNSYLSI- 231
            L +H+ I      P+     +W  T      +P+         +   +C      L I 
Sbjct: 185 ALQRHDGILVRS--PQTGRVRSWPLTSRWQAQQPLQLRQAMTMSDSDAACAVAEQALGIA 242

Query: 232 -------MQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
                  + Y + G  + +LPD+ V D                ++YF   + L   GK +
Sbjct: 243 LVSLPFAVPYLLAGRLLRVLPDWYVDDG-------------HISLYFAEHKLLP--GKTR 287

Query: 285 AFRNFI 290
           AF +F+
Sbjct: 288 AFIDFV 293


>gi|324005614|gb|EGB74833.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
          Length = 305

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKTLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|114799488|ref|YP_758751.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114739662|gb|ABI77787.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 299

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 27/298 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L VF +VA   +F  AA++L +++S++S+ I  LE  +GI L  R  R ++LTE G
Sbjct: 4   DLNALSVFALVAEERNFRAAADRLGVTRSAVSQTIRKLEETLGIALVQRTTRSVSLTEAG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLYPD 121
            +L+   +     L    +EL  S S +P G+LR+A +  + ++ L G  L  F   +P 
Sbjct: 64  ERLYVEAAPALGDLRRA-VELTGSLSGRPQGQLRLAVS-SIAEHFLGGALLSTFAKAHPG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSS------SLIQRKLVTIHMHAYAAPHYLK 175
           IQ+ +++ +++ DI  +  D A+RL + I+        S  QR+L      A  AP YL 
Sbjct: 122 IQMDVLVTDEEFDIVAEGYDAAVRLGEVIEQDMIAVPVSAEQRQL------AVGAPSYLA 175

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIM 232
               P   ++L  H  + +    PK    + W    +R   E  +S    +  N    ++
Sbjct: 176 EAGAPAHPRDLVHHRCVGWRS-APK-QAPYRW-EFAERDGREFSVSVSPEITTNDMALMI 232

Query: 233 QYCVLGSGIALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG-KLKAF 286
           +  V G+GI    +   +       LV ++ED   P F+ ++ Y  + +N   KL+A 
Sbjct: 233 KLAVAGAGITFGMEESFWPAMKRGELVAVLED-FCPHFSGFYLYYPSRRNLAPKLRAL 289


>gi|330950994|gb|EGH51254.1| LysR family transcriptional regulator [Pseudomonas syringae Cit 7]
          Length = 315

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILASVEEAEAEASDAHARPAGQLKVHSMPGVGQHYVIDAIARYRRSHPDVAFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K         +L
Sbjct: 126 TMTHRVPDLLEEGYDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAHKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+        WL   D P G+  +    S L VNS  ++      G GI 
Sbjct: 186 LNHACLR---LVSPVFPLDKWL--FDGPEGQEMVTINSSPLLVNSADAMKTAISSGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y   +   N  LVR++ D  +    +Y  YP            R ++  K R W
Sbjct: 241 ILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPS-----------RQYLDAKIRTW 287


>gi|163761395|ref|ZP_02168469.1| putative LysR transcriptional regulator [Hoeflea phototrophica
           DFL-43]
 gi|162281390|gb|EDQ31687.1| putative LysR transcriptional regulator [Hoeflea phototrophica
           DFL-43]
          Length = 302

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 135/299 (45%), Gaps = 10/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            ++ ++L  F  V  +GSFT AA++L ++++ +S QI+ LE E+   L  R+ R ++ TE
Sbjct: 4   GYNLNRLAYFAAVVETGSFTRAADRLKVTKAVVSSQITQLEQEIQATLLIRNTRKVSPTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   + +  + +    EL + +  P+G LR+    D G  ++   +  F   YP 
Sbjct: 64  AGEAFYARCATILAEADEAFEELSQMTAVPAGTLRLTAPNDYGTAIVTPVVAAFRRQYPF 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            ++   L     D+     D AIR+   +  S+L  RK+ +          Y+       
Sbjct: 124 CKVDFHLGESRSDLMTGELDLAIRVGW-LTDSALQARKIGSFRQVLVGGSDYVSGLPAIA 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L   + ++   +    M  F    T    +     + L ++S  ++++    G+G+
Sbjct: 183 HPDDLRTADFVSNALMTDPDMWRFT--NTKGNEVTVRMENTLSIDSTPALLEAVKAGAGL 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+LPDY+V+D     ++   +I P ++     +Y  YP +     K+ AF + + L  +
Sbjct: 241 AVLPDYLVQDQLQTGKL--QIILPGWSLRDGGIYTVYPPSRFRPAKVTAFVSMLMLAEK 297


>gi|156933460|ref|YP_001437376.1| hypothetical protein ESA_01278 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531714|gb|ABU76540.1| hypothetical protein ESA_01278 [Cronobacter sakazakii ATCC BAA-894]
          Length = 303

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 138/303 (45%), Gaps = 24/303 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  V    SF+ AA  LHL+  ++S+QI+ LE  +G  LF R+ R L +T +G  
Sbjct: 7   DDLAVFVHVVECRSFSAAARALHLAPKTVSKQIARLEQALGATLFERNTRNLRITHEGRA 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +          LE  Q     +S    G +R+   +  G+  +   +++F  L+P +   
Sbjct: 67  IAERAKVALGVLEEMQEVATGASRDLRGIIRLTAPMPFGRKYVAPAIQDFCRLHPGVTFD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  D+  D  D AIR+ + +  S L+  ++        A+P YLK   +P   Q+
Sbjct: 127 LRLSDQMQDLYSDDLDLAIRMGE-LADSRLVALRVADNRRILAASPDYLKAHGQPAHPQD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-------SCLQVNSYLSIMQYCVLG 238
           L +HN + F    P   +   W      P+ + R+         L  +S   +  +C+ G
Sbjct: 186 LAQHNCLVFA--YPGLQQSI-W------PLRKGRMEKAVAVGGTLCSDSGDVLHAWCLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIM-EDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI+L   + + +   +  L+R++ E   TPS  ++     E +    +L  F +F+  +
Sbjct: 237 MGISLRETWDIHEELRDGRLIRVLPEWEATPSRISIVRARREPIAR--RLTVFSDFLLER 294

Query: 294 ARD 296
            RD
Sbjct: 295 WRD 297


>gi|114563680|ref|YP_751193.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334973|gb|ABI72355.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 299

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 137/288 (47%), Gaps = 10/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  +  +GS T +A+QL ++  ++S  +  LE ++ ++LF R  R L +T +G +  
Sbjct: 6   LHLFIRIVETGSITESAKQLSITPPAVSSALRRLEKQLDVQLFIRTTRQLRITPEGEQFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E    L   QI   +   K SG LR++ + DLG+N++   + E    +P + I L 
Sbjct: 66  FHCREALESLAQGQIAAHQIQGKISGNLRLSISSDLGRNIVLPWMMELTKQHPTLSIDLN 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D  +D  D A+R  KP + S+++   + T+     A+  YL    EPL  +EL 
Sbjct: 126 IGDSLSDFFLDNVDIALRYGKP-EDSTMVSFLIATMDRITCASADYLSKWGEPLHPEELR 184

Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIM-QYCVLGSGIALLP 245
            HN +    L  K    FN W  +      + ++    +++   I+ ++ + G GIA   
Sbjct: 185 THNCL----LHKKKGYLFNQWEYSNQSGNHKIKVDSNNISNDTDIVRRWAIFGQGIAYRA 240

Query: 246 DY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  ++ D  +  LV+I+ D  +P   ++   P   + T  + A R  +
Sbjct: 241 EIDVLADLRSGKLVQILSDYQSPPVELHLICPSRKQVTPAVLALRELL 288


>gi|161520586|ref|YP_001584013.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353226|ref|YP_001948853.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344636|gb|ABX17721.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337248|dbj|BAG46317.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 303

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 132/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+   VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT +G+  +
Sbjct: 7   MRILARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTVEGTTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +   +E+   P G +R+        + +   L +F   YPD+++ + 
Sbjct: 67  ERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHRVIPALPDFHARYPDLRVVIS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+  Y      P +  EL 
Sbjct: 127 MTDRFVDLVADGIDCAVRV-GTLSDTSLVARRIGEMAQLNCASRDYAARHGLPRTPDELP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  +  G    +   + +W  T D   G+       S + VNS  + +  CV G G+  
Sbjct: 186 DH--VAVGYFSSRTGRELDWEYT-DMDTGDVHSVKMRSIVSVNSSQAYLACCVAGLGMIQ 242

Query: 244 LP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P    + ++ D   LV ++ +   P   V   +P       +++ F +++
Sbjct: 243 APRDGLEPLLADG-TLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWL 292


>gi|170736398|ref|YP_001777658.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818586|gb|ACA93168.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 296

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 128/300 (42%), Gaps = 23/300 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+ 
Sbjct: 12  NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                    H +     +L    VK    L I+TT       L   L +F   +PD  ++
Sbjct: 72  YFSDVQRALHAIADATDKL----VKRRAALTISTTPSFASKWLIPRLAQFTEAHPDYDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP--LSI 183
           +I D +      D  D AIR  KP     L    L  + + A  +P  L     P  L+ 
Sbjct: 128 VIADPQIATFRHDGVDLAIRYGKPPFGKHLATHALFPLDVCAVCSPSLLTAPAAPRALAG 187

Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           Q L  D H      DL P+      +LA +  P+       L+ N     +   V G GI
Sbjct: 188 QVLLHDAH------DLWPE------FLAAMPAPVDVDPHKGLRFNQTSLAIDAAVAGQGI 235

Query: 242 ALLPDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           AL  + +V+ +    R+ +  D   P S   Y  YP   ++   +   R ++   A D +
Sbjct: 236 ALATEPLVERDIAAGRLCKPFDFAFPLSMGFYLVYPAERRDDDAIAVMRAWMIQAASDGR 295


>gi|77459139|ref|YP_348645.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383142|gb|ABA74655.1| LysR family transcription regulatory protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 299

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F   A SGS + AA  L L+ ++ S  +  LET +GI+LF R  R + LTE+G +  
Sbjct: 7   LEIFVRTADSGSISAAARALELTPAAASIALKRLETRLGIRLFARSTRSMRLTEEGRRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L   +  L++ +   SG L++A   D G+N+L   L +F   +P IQ+QL+
Sbjct: 67  ESVRLALATLAEGEQALKQQTEGLSGVLQLAAPSDFGRNVLLPWLDDFKREHPHIQLQLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQEL 186
           L+++  D+  +  D A+R   P   S+L+   ++  H   A A+P Y++    P +  EL
Sbjct: 127 LNDRHADLFRETVDVALRFGVP-SDSTLVALPILPEHRRVACASPAYIERHGTPQNPAEL 185

Query: 187 DKHNLITF 194
            +H  + +
Sbjct: 186 SEHGALLY 193


>gi|239820117|ref|YP_002947302.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239804970|gb|ACS22036.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 295

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +GSF+ AA  L  S S++S+ ++ LE   G++LF R  R L+LT++G+  +
Sbjct: 10  LVAFASAVEAGSFSAAARTLGTSPSAVSKSVARLEQRFGVRLFQRSTRVLSLTQEGAAYY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+     ++ + +   G LRI    DLG+ LL+  +  FL  +P++++++ 
Sbjct: 70  ERIAPLLRALDQAGDAMRPAGIA-QGVLRITAPGDLGRILLEPVIGRFLPRHPELKLEMS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D AIR  + +  S L  R+L  + +   A+P YL     P SI+ L 
Sbjct: 129 LADRHVDLIREGYDIAIRAGQ-VADSDLTARRLADLPLVLVASPVYLARRGTPDSIEALH 187

Query: 188 KHNLITF 194
            H  + +
Sbjct: 188 SHAHVRY 194


>gi|209519846|ref|ZP_03268630.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499722|gb|EDZ99793.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 318

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 143/289 (49%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  +AR GSF  A+ ++ LS S +S++I+ LE  +G+KLF R  R +++T  G    
Sbjct: 18  LQLFCHIARRGSFVAASTEMGLSPSHVSKRIAMLEAGLGVKLFQRTTRRVSVTSDGEAAL 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   ++       +   + SG LRI+T++ LG+  +   L      +P+++I L 
Sbjct: 78  QWAQKILDDVQGMADAFADRRTELSGLLRISTSLRLGRKHVSPILAMLRERHPNLEIWLE 137

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D+  +  D  +R+ + +Q   LI  ++V       A+P YL+    P+ + +L 
Sbjct: 138 LLDRRADVVGENFDIDVRVGE-VQEPHLIAHRMVESARILCASPAYLEQHGAPVELNDLT 196

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLS--IMQYCVLGSGIALL 244
            H+ + F     +  +D   +  +  P GE  +     V S LS  ++Q+   G GI ++
Sbjct: 197 SHDCLLF-----RGRDDRFGVWRLSGPDGEKSVKVTGTVASNLSDIVVQWAKDGYGIVMV 251

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V ++     LVR++ D    S  V+    E L ++ +++    F+
Sbjct: 252 SIWDVAESLRAGELVRVLPD-YQQSADVWAVTAERLSSSARIQVCIEFL 299


>gi|194365773|ref|YP_002028383.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348577|gb|ACF51700.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 343

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 143/295 (48%), Gaps = 17/295 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG----SK 65
            F  VA  GSF  AA++L + +S++SR +  LE+++G++LF R  R  TLT +G      
Sbjct: 29  AFIAVAAEGSFARAADRLGIGRSAVSRSVQKLESQLGVRLFLRTTRSTTLTREGELFLEG 88

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +   LE  + +L+E    P G LRI+ +   G+ ++   L  F   YP + ++
Sbjct: 89  CNPGVNCILQALEEMR-DLREG--PPRGHLRISASHGFGRRVIAPLLAAFRAEYPQVSVE 145

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD +  D++ D  D A R    ++ S +I ++LV + +   A+P Y++    P S+  
Sbjct: 146 LLLDEQAPDLAGDRIDVAFR-DGLLEDSQVIAKQLVPMQLVVCASPAYVRAQGLPSSVDA 204

Query: 186 LDKHNLITFGDLIPKC-MEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L  H  I  G  +P   M+ + + +   D  +  P  + L  N     +Q  + G GIA 
Sbjct: 205 LSTHACI--GRRLPGGRMQPWEFRVDGTDVHLQPP--AALVFNDADLALQAVIDGLGIAQ 260

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP Y V++      +V  +E         Y CY    +   +++AF +F   + R
Sbjct: 261 LPSYQVREALWAGRVVTCLERYAPLDRGHYLCYLSRRQLPKRVRAFIDFSTQRVR 315


>gi|118497885|ref|YP_898935.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. novicida U112]
 gi|194323859|ref|ZP_03057635.1| pseudin antimicrobial peptide family protein, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|118423791|gb|ABK90181.1| transcriptional regulator, LysR family [Francisella novicida U112]
 gi|194322223|gb|EDX19705.1| pseudin antimicrobial peptide family protein, putative [Francisella
           tularensis subsp. novicida FTE]
          Length = 296

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLTEQ 62
           ++D + +F  +   G+FT  A+QL++SQS++SR+I  LE  +  KL  R++RG + +T +
Sbjct: 2   NFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEVTTE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+   S +  +   T  +   +S +  G LR+        NL+   L  F   YP++
Sbjct: 62  GQSLYNNFSYIEEQAVVTFQKWINNSKQIKGILRVGVPKLFFDNLVAPKLDTFYTRYPNV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+        +D+  D  D AI  +KP  ++  I + L+      YA+  Y++    P +
Sbjct: 122 QLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTI-KTLLKSKNKLYASKKYIQEKGVPET 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS 221
           I+EL+ H+++ F D   KC       + +D    E  IS
Sbjct: 181 IKELENHSIVGFIDN-DKCQNALVGFSELDNTSLEVNIS 218


>gi|319780290|ref|YP_004139766.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166178|gb|ADV09716.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 301

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 128/290 (44%), Gaps = 17/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VAR  SFT AAE+L ++Q+++S QI  LE  VG  LF R  R + LTE G +L 
Sbjct: 18  IRVFEAVARHLSFTKAAEELAMTQAAVSYQIKVLEERVGAPLFLRRPRQIALTEAGQRLA 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              SE +  L       +  +    G L + T +    N L  +L  F + +P + ++L 
Sbjct: 78  PAVSEAFAILGQAYAAARGGA---DGLLCVTTVLTFASNWLAHHLGSFQIAHPSLAVRLE 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY---LKNCREPLSIQ 184
             ++  D + +  D AIR     +   L   KL+        +P     +   REP  + 
Sbjct: 135 TSSRLTDFAREDVDLAIR-SGGGKWPGLEAYKLLDADFTPMLSPKLAASIGGVREPADLL 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L    ++  GD+     + F         + +   S +   +Y +     + G G+A+L
Sbjct: 194 RLP---ILDPGDIW--WTQWFEAAGVHSHDLAKRPGSSMGAQAYEA--NAAIAGHGVAIL 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + K       L++  + V       +  YPEA +N  K++AFR+++ 
Sbjct: 247 TRALFKAELAGGRLIQPFDLVGDDGHAFWLVYPEARRNVPKIRAFRDWLL 296


>gi|163857341|ref|YP_001631639.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261069|emb|CAP43371.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 309

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 134/309 (43%), Gaps = 33/309 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA++ +F  AA  L + +S++SRQ++ LE  +G++L  R  R + LTE G    
Sbjct: 7   MEFFVEVAKTCNFGRAAANLGMPKSTVSRQVAELERSLGLQLLSRTTRKVELTEAGRLYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +    ELQ+    PSG LR+    D G + L     EF   YP++   L 
Sbjct: 67  ERCQRIVADAQIAHEELQKLVEMPSGPLRVNMPADFGTDFLAEAFMEFSQRYPEVTFYLD 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L + +      +  C I +    +  S+ I R L  +  + YA+P YLK    P    +L
Sbjct: 127 LASPE-HAGRVFQRCDISIEIGALPDSTQIARLLGRLSAYLYASPDYLKRHGTPQHPSDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDR-PI--GEPRISC-----LQVNSYLSIMQYCVLG 238
             H          +C+E     A V R P+  G+ RI         VNS   +     LG
Sbjct: 186 TSH----------ECLEFRADNARVTRWPLSRGDERIEVTPGNRFSVNSVAMVRSLASLG 235

Query: 239 SGIALL-PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT----GKLKAFRNFI 290
           +GIA+L P   V+   +   L R++ +     F VY     A+ +T     K + F  F+
Sbjct: 236 AGIAILAPAQSVRQDVEQRRLQRVLPEWQAGPFPVY-----AVTDTRLLPAKTRIFIEFL 290

Query: 291 FLKARDWKF 299
             + RD K 
Sbjct: 291 MERLRDGKL 299


>gi|116695673|ref|YP_841249.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530172|emb|CAJ96519.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 322

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 132/296 (44%), Gaps = 32/296 (10%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA+ G F+ AA QL ++ S ++R+I+ LE E+ + L  R+ R L LT  G       
Sbjct: 10  FVAVAQRGGFSAAARQLGVTASILTRRIASLEQELRVPLLVRNTRKLALTPAGEAYFVRC 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI--- 127
            E+   +E  + EL+ +   P G+L +   + + +  +   L EF+  YP I +++    
Sbjct: 70  REILSSMEEAEQELERACDDPVGRLHVQLPLIVARLHVVPRLSEFVEQYPGINLKITQAD 129

Query: 128 -----LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
                L  + +DI++   D        +  S L+ R L        A P YL     P  
Sbjct: 130 GLQHDLIGRGLDIAVWGGD--------LPDSRLVARPLTRNLRVTCATPEYLDRYGRPER 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL--------SIMQY 234
           I++L  HN +T  DL        +WL     P GE R++ ++ N           +++  
Sbjct: 182 IEDLASHNCLT-ADLF---HGGRSWL--FQTPEGE-RLAPVKGNLAFDNSDNYREAVLAG 234

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LG G ++L D  V+    L +++   +    T+Y  YP A     K+KAF  F+
Sbjct: 235 LGLGQGPSILFDVDVRVG-RLEQVLTGYVARGQTLYAVYPPAQGRNAKVKAFVEFL 289


>gi|311104359|ref|YP_003977212.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310759048|gb|ADP14497.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           36 [Achromobacter xylosoxidans A8]
          Length = 321

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 114/247 (46%), Gaps = 10/247 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +    V+A +GS+T AA +L +S++S+S++I  LE   G+ L  R  R + LTE G 
Sbjct: 11  WSHIHCLGVLADTGSYTAAARRLQISKASVSQRIVELEQAAGVPLVRRTTRSVGLTEAGQ 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L   T+  + ++E     +++ S  P G L +   + LG+ ++   + EFL  +PD++I
Sbjct: 71  SLVDQTAAAFLRIEEGFSAVRDLSEGPRGVLSVTAPVALGRQVIAPLIPEFLKRFPDVRI 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ----SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           QL L +    ++ +  D AIR    +     +S + + + V +     A P YL     P
Sbjct: 131 QLELSDHLASLATEGFDLAIRHVAGVPDTHVASVICETRSVLV-----ATPEYLARNGTP 185

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  HN + +          F      D+ +  P       N+   + +      G
Sbjct: 186 KIPMDLAAHNCLHYLRRSGSATWSFESRDG-DKRVAVPVRGSFTANNSEVLREVAAGSLG 244

Query: 241 IALLPDY 247
           IALLPD+
Sbjct: 245 IALLPDF 251


>gi|291615863|ref|YP_003518605.1| PtxR [Pantoea ananatis LMG 20103]
 gi|291150893|gb|ADD75477.1| PtxR [Pantoea ananatis LMG 20103]
          Length = 289

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 8/244 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V    SFT AA  L +S+S ISR+I+GLE  +GI+L  R  R +TLTE G   +  
Sbjct: 3   LFARVVELKSFTEAARVLGVSKSHISREIAGLEQRLGIRLLQRTTRRMTLTELGQAYYPF 62

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++   +  +Q++   P+G +R+   +  G   +   L  FL  +  I + L L 
Sbjct: 63  CVRMLDEMHRAEDFVQQAHQNPAGNVRLQAPVTYGCQCIVPLLNRFLRGHLHINVDLSLT 122

Query: 130 NKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + + +   D  D AI +R   P Q +    R L  IH   YAAP YL         + L 
Sbjct: 123 DNNDETLGDGVDIAIVIRAHAPRQGNF---RVLSDIHWGLYAAPDYLAQHPAISHPRLLP 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+L+ F    P       +     R   + R S  + N+ +++++  + G+GIA LP Y
Sbjct: 180 RHDLLMFHG--PAHTAALPFRRDKLRLAVDVR-SRFRANNSMALLKAALAGNGIAYLPSY 236

Query: 248 IVKD 251
           +V++
Sbjct: 237 MVQE 240


>gi|206558762|ref|YP_002229522.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198034799|emb|CAR50667.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 318

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 11/248 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V    SF+ AA +L ++ SS++R+I  LET++GI+L +R    L  TE G  L+
Sbjct: 21  LALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLLY 80

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +L   Q +L     +P G LR+      G+  L   L  F+  YP +Q+ L+
Sbjct: 81  GRATRMLAELRGLQEDLHSQHDEPGGLLRVDCPAPFGRRHLMAALAAFMQRYPALQVDLV 140

Query: 128 LDNKDIDISMDY----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L +  +D+         D A+R+  P++ +  +   L        A+  YL    EP S 
Sbjct: 141 LTDSMVDLQGARLGSDVDLAVRI-GPLEDTRFVATVLAPQRRVLCASAAYLARRGEPASP 199

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H+ + +    P     F     V     +PR    + N   ++++  + G G+A 
Sbjct: 200 DALAGHDCLAWHGAPPPGAWRFGERRHVP---AQPR---FRSNHSEALLEAAIDGLGLAH 253

Query: 244 LPDYIVKD 251
           LP ++  D
Sbjct: 254 LPTWLAAD 261


>gi|183599131|ref|ZP_02960624.1| hypothetical protein PROSTU_02585 [Providencia stuartii ATCC 25827]
 gi|188021356|gb|EDU59396.1| hypothetical protein PROSTU_02585 [Providencia stuartii ATCC 25827]
          Length = 294

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 76/138 (55%), Gaps = 2/138 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR GSF  AA++LH++ S+ISRQI  LE ++GI+LF R  R + LT  G KL+
Sbjct: 10  LRFFDAAARHGSFVKAADELHVTHSAISRQIRLLEEQIGIELFERRNRAVFLTLAGKKLY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + TSE++ +L+ T  EL   SV  S  + I+    +    L   L +F   +P I + LI
Sbjct: 70  QTTSEIFAQLDKTLAEL--GSVVDSNVVSISCEPTIAMKWLIPRLTQFYQQFPHITVHLI 127

Query: 128 LDNKDIDISMDYADCAIR 145
                ID +    D A R
Sbjct: 128 AAGGPIDFTKAGVDLAFR 145


>gi|330815659|ref|YP_004359364.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327368052|gb|AEA59408.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 301

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 135/286 (47%), Gaps = 19/286 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F     +GSF+ AA  L L Q ++SR ++ LE  + ++L +R  R L+LT +G + +   
Sbjct: 10  FARAVETGSFSAAARDLGLGQPNVSRHVAALEAHLRVRLLHRSTRRLSLTPEGERYYAEV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   ++ ++  L++  + PSG LR+A    L    +   +  FL  YP + ++L + +
Sbjct: 70  RRILDAVDESESSLRD-ELAPSGSLRVACPTALAHAFVMPQVPAFLERYPGLSLELQIQD 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +++  + A+ AIR+   ++ S+L  R++        A+  YL     P +   L +H+
Sbjct: 129 RYVNLLDEGAELAIRIGH-LEDSALRARRIGRFARVCVASRDYLARHGAPATPAALREHD 187

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV 249
            I +  L  +    F          GE  +S  L+VNS  ++ +  + G GIA  P ++ 
Sbjct: 188 CIVYTLLASQAAWQFR--------DGEVAVSGRLRVNSPQAVQEAVLAGVGIAHGPRWLF 239

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +    +  L  ++++   P   ++  Y        +L + R  +F+
Sbjct: 240 EAGLADGRLQLLLDEHAAPPVPIHLLY-----AANRLLSRRAIVFM 280


>gi|16326468|gb|AAL17790.1|AF361470_11 putative positive transcriptional regulator [Rhizobium
           leguminosarum bv. trifolii]
          Length = 299

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 14/292 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  LR F + A   +F   A +L ++ ++++R I+ LE ++G++LF R  R ++LT  G
Sbjct: 3   DYKLLRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEEDLGVQLFVRTTRQVSLTTDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +            L+  + +L  +     G+LRI+     GQ +L   L  F   YP I 
Sbjct: 63  AIFAAQIQPAVQALDNARKDLMNTHKADHGRLRISAPTWFGQQVLPPILSAFRERYPKIS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            ++ L +  ++I  D  D AIR+         I RK+  +H    AAP   + C      
Sbjct: 123 FEISLADGLVNIIDDDYDLAIRISAAPSDKFTIWRKISVVHRILVAAPGS-RFC------ 175

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSG 240
            ++   N +   D +    +      T+    G   IS    +  NS   +      G+G
Sbjct: 176 -DMKHPNELIPDDCLAYSGDSKRETWTLSDGSGSATISAGRAVSANSGEVLASMAADGAG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +A+LP + V ++     L  +++D   P   +   YP       ++ +F  F
Sbjct: 235 VAMLPKFHVAEHLRTGRLAHVLQDWSPPDLWLTLYYPPYQALPPRIASFSKF 286


>gi|56696827|ref|YP_167189.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678564|gb|AAV95230.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 303

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 136/300 (45%), Gaps = 29/300 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR    + R GS +  AE+L L+QS++SRQ+  LE ++G++L  R  + L+LT      
Sbjct: 13  SLRALEALDRLGSASAVAEELALTQSAVSRQLQTLEGQMGVELIRRDRKRLSLTPAAQDY 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPS-GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                E  +++    + LQ   V P+ G + +A     G   L   L EF  L+PDI I 
Sbjct: 73  VTEIREALNRIAQASLRLQ---VAPAGGTVNLAILPTFGMRWLMPRLPEFSRLHPDITIN 129

Query: 126 LILDNKDIDISMDYADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +    +  + + +  D A+   +P    +  L+ R    + +    AP  L +   P S 
Sbjct: 130 MTTRLRPFNFASEPFDAALHFGEPDWPGTDRLLLRAERVLPV---CAPGLLPHG-APKSP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV------NSYLSIMQYCVL 237
            +L +  L+      P+  +D  W A +        ++C +       + + +I Q  + 
Sbjct: 186 ADLLRLPLLHI-QTRPRAWQD--WFAQMG-------VTCPETLPGTLYDQFATIGQAALH 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+ALLP+Y+V+ +     LV    D +      Y  +P A  N   L+AFR+++  +A
Sbjct: 236 GLGVALLPNYVVEQDLATGRLVAAYPDAVETLGAYYLVWPRARGNDPSLRAFRHWLAAQA 295


>gi|77456947|ref|YP_346452.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77380950|gb|ABA72463.1| LysR-family regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 303

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 7/248 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L++F  V   GS + AAEQ+  + S++SR +S LE ++   L  R  R + LTE+G  
Sbjct: 6   DELQIFVCVIECGSISAAAEQVGQTPSAVSRTLSRLEAKLDTTLINRTTRRMDLTEEGKY 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++  +  L      PSG+LRI        + +   + EF  LYPDIQ++
Sbjct: 66  FFEQAKLILDQMDQLEERLSSRQQTPSGRLRINAASPFMLHAIVPYIDEFRRLYPDIQLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  ++  ID+     D AIR+   +  S+L  R L    +   A+P YL+    P  + +
Sbjct: 126 LNSNDLIIDLLEQSTDVAIRI-GTLADSTLHARSLGCSPLLIVASPAYLEKHGAPREVAD 184

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H L+ F        E  N W          P    +  +S  ++    + G GIA L
Sbjct: 185 LSEHTLLGFTQ-----NEGLNQWPLRYVHGDRWPITPAISASSGETVRHLALEGQGIACL 239

Query: 245 PDYIVKDN 252
             ++  D+
Sbjct: 240 SHFMTIDD 247


>gi|254242265|ref|ZP_04935587.1| hypothetical protein PA2G_03003 [Pseudomonas aeruginosa 2192]
 gi|126195643|gb|EAZ59706.1| hypothetical protein PA2G_03003 [Pseudomonas aeruginosa 2192]
          Length = 306

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+VF   + SGS + AA QL +S +  S  +  LE+E+ ++LF R  R L LT +G 
Sbjct: 4   YDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  LQ    + +G L+++   D G+NLL   L EF   YP + +
Sbjct: 64  AFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           +L+L ++  D+     D AIR   P   SSL+   L   +     AAP YL    EP   
Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGAPA-DSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182

Query: 184 QELDKHNLITF 194
            +L +HN + +
Sbjct: 183 DDLREHNCLLY 193


>gi|311103551|ref|YP_003976404.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758240|gb|ADP13689.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           9 [Achromobacter xylosoxidans A8]
          Length = 305

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 115/245 (46%), Gaps = 21/245 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V R  S T AA+ LH++QS++SRQI  LE  +G+ L  R  R ++ T +G++
Sbjct: 12  DLVRGFVAVGRRMSITLAAQDLHVTQSAVSRQIRALEAHLGVPLLVRGFRSVSFTSEGAQ 71

Query: 66  LHRVTSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L R+      +L   T Q+   E        + + TTI +    L   L +F   YP I 
Sbjct: 72  LFRMADVWLSQLGDLTEQLRAPERRT----PVTVTTTIGVASLWLLPRLGDFQAAYPHID 127

Query: 124 IQLILDNKDIDISMDYADCAIR--LRK--PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +++  DN+ IDI  +  D AIR  LR   P  ++ L    +V +     A P        
Sbjct: 128 VRVAADNRLIDIDRESVDIAIRYSLRDGVPDSAAWLFGEAVVPV-----AHPSLKARL-- 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLG 238
            L  +EL +H L+ F D     ++   WL    R +G  P    L+ N Y  I+   + G
Sbjct: 181 -LDAEELQRHVLLEFDDPTRPWLQWSEWLNA--RGLGRAPARGMLRFNQYDQIVHAALAG 237

Query: 239 SGIAL 243
            GIAL
Sbjct: 238 HGIAL 242


>gi|227820037|ref|YP_002824008.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227339036|gb|ACP23255.1| putative transcriptional regulatory protein, LysR family
           [Sinorhizobium fredii NGR234]
          Length = 303

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 24/301 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VA +GSF+ AA  L L+Q ++SRQ+S LE  +  +L +R    + LT +G ++
Sbjct: 6   ALRTFLRVAETGSFSAAAVDLDLTQPAVSRQVSALEAHLNTRLLHRTTSAVALTAEGEQV 65

Query: 67  ----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                RV   V    ETT  E   +SV  SGK+R+     LG   +   L   L  +P +
Sbjct: 66  IPMALRVVEAVDALGETTCAE--GASV--SGKVRLTLPAPLGL-YVSDRLTGLLANHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I   +  D+  +  D  +RL  P+  SSL+ R+L         AP YL+    P +
Sbjct: 121 SVEMIFREEPSDLVGEGLDLEVRL-GPVADSSLVCRRLGWTTAFLVGAPSYLRERVAPET 179

Query: 183 IQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
             +L  H  I +   GD       D     +V       RI+  L  N+ +++ +  + G
Sbjct: 180 PNDLRAHECICYSRAGDARTWSFSDGADEVSV-------RIAPRLIANNAVAVHRATLAG 232

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           SG+A+L   +V    +   LV +M D       +   YP       +++   +F+    R
Sbjct: 233 SGLAVLSHILVCPDIEAGRLVNVMPDFPPTRLPINVVYPSRRNMPPRVRVALDFLVEAVR 292

Query: 296 D 296
           +
Sbjct: 293 E 293


>gi|227115332|ref|ZP_03828988.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 300

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 2/184 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +GS   AA    +S +++S+ +S LET +G++L  R  R +TLTE G +     
Sbjct: 10  FIRVVENGSIAAAARAKGMSPAAVSQSLSRLETHLGVRLISRTTRSMTLTENGKRYFEKV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             + H +E    +   S  K  G L IATT   G+ ++   +  F   +PDI I+LI  +
Sbjct: 70  RHIPHDIELAS-QAAASETKLQGPLCIATTAAFGRYVIAPLMPAFKESFPDIDIELISTD 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           ++++  ++  D +IR+   + +  LI RK+ ++     AA  YL     P + +EL +H 
Sbjct: 129 RNVNHRLEGVDVSIRIEAQL-NDQLIARKIASLPFIFCAAQAYLDRAGTPQTPEELSQHA 187

Query: 191 LITF 194
            + F
Sbjct: 188 CLVF 191


>gi|197104632|ref|YP_002130009.1| transcriptional regulator,LysR family [Phenylobacterium zucineum
           HLK1]
 gi|196478052|gb|ACG77580.1| transcriptional regulator,LysR family [Phenylobacterium zucineum
           HLK1]
          Length = 308

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 97/187 (51%), Gaps = 2/187 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L  F  VA + SFT  A +L +S + +S+ ++ LE  +G +L  R  R ++LT+ G  
Sbjct: 5   DELAAFVAVADARSFTQGARKLGVSSAQVSKLVARLENRLGARLLNRTTRDVSLTDTGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++    E  +  +++ S  PSG+L+++  +  G+N L   L +F      + + 
Sbjct: 65  YLERARDLLDGFEALETSVKDQS-GPSGRLKVSAPVSFGRNQLTPALLDFAAGCSAVSLD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  ++ +++  +  D A+R+   +  SSL+ R+L  + +   A+P YL     P ++ +
Sbjct: 124 VVFSDRMVNLVEEGFDVAVRIGH-LSDSSLVARRLAAVRLVTCASPDYLARAGTPTTLAD 182

Query: 186 LDKHNLI 192
           L +H  +
Sbjct: 183 LARHEAV 189


>gi|78063249|ref|YP_373157.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971134|gb|ABB12513.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 372

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 100/201 (49%), Gaps = 1/201 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +    SFT AA+ L +S+++ +R +  LET +G+ L  R  R L  T +G   +
Sbjct: 13  MRIFTRIVEMNSFTRAAQALGISRATATRTVQELETALGMPLLVRTTRALRATPEGDAYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   ++  +  ++ +++ PSG LR+     +   ++   L  F   +PD+ + L 
Sbjct: 73  RRCVRITADVDELEASIRGAALHPSGPLRVELPAAVADTIVLPALGAFHARHPDLVLTLG 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  +  D   D  DC++RL + +  SSL+ R+L  +     A+P YL     P ++ +L 
Sbjct: 133 VSGRAADRVGDAIDCSVRLGE-LPDSSLVARRLGMLERVTCASPAYLDRHGVPRTLDDLA 191

Query: 188 KHNLITFGDLIPKCMEDFNWL 208
            H  ++   +  +   + ++L
Sbjct: 192 MHRAVSLSSVPGQRTAELDFL 212


>gi|260777550|ref|ZP_05886444.1| transcriptional regulators LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607216|gb|EEX33490.1| transcriptional regulators LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 299

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 153/308 (49%), Gaps = 23/308 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D  +++VF  +  SGS T AA++L +S+S +S  + GLE  +G+KL  R  R  +LT
Sbjct: 1   MKSDLHRMQVFAQIVESGSITKAADKLDVSKSVLSHHLQGLEQHLGVKLLTRTTRRQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + ++   E+   +   + E+++S+   +G + + +   L  +L+  ++ EF+  + 
Sbjct: 61  EAGQRYYQRCLEMKKLMSLAEEEVRDSNTGLAGTVTVTSPHTLMTHLIGPSMCEFVKNHS 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL--KNCR 178
            I+ +L+ ++  +++   Y D +I + +   SSS    K+  +     ++P YL   N  
Sbjct: 121 GIEPRLLANDMRLNLIDKYIDLSITVGELPDSSSRAT-KIGELEQVLCSSPEYLTKNNIT 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRI-----SCLQVNSYLSI 231
            P++  EL  +      D I    E  N    V+R   +G+  I     S    +S  +I
Sbjct: 180 LPVTSTELIDY------DYIANQWEGIN----VERKFSVGKQSITYRFHSTRLGDSVPTI 229

Query: 232 MQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
               + G GIA LP   V+D+     L+RI  D ++   +V+  +   L+   +++AF +
Sbjct: 230 RMMTLSGLGIACLPILAVEDDLKEGRLIRITADGMSLKASVWAVHNYGLQMPARIRAFID 289

Query: 289 FIFLKARD 296
           F+  KA+D
Sbjct: 290 FVKEKAKD 297


>gi|241764188|ref|ZP_04762222.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241366465|gb|EER60969.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 297

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 85/185 (45%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VAR  SFT AA QL +SQS++S  I  LE  +G++L  R  R ++ TE G +L + 
Sbjct: 11  AFLAVARERSFTRAAAQLGVSQSALSHTIRALEARLGLRLLTRTTRSVSPTEAGERLIQR 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +  +  +    +  +E   KP+G +RI  +      +L   L +    YPD++I++ ++
Sbjct: 71  VAPRFEAITDELVAFEELRDKPAGTVRITASDFAANTILWPKLSKLQQKYPDVKIEVAIE 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
               DI  +  D  +R    I       R    I M    AP YL+    P +  +L  H
Sbjct: 131 PGLTDIVAERFDAGVRFGDQISKDMTAVRISPDIRMVIVGAPSYLEGHPAPKTPSDLTDH 190

Query: 190 NLITF 194
             I  
Sbjct: 191 ECINM 195


>gi|238897139|ref|YP_002921885.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238549467|dbj|BAH65818.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 304

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 6/275 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS + AA  L++  +++SR I  LE+ +G++L  R  R LTLT+ G         +  ++
Sbjct: 17  GSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTDAGVDYVAAARRILEEV 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E  + +      +P G+L I+     G+  +   + EF+  YP I+++L+L +++ D+  
Sbjct: 77  ENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPLIRVRLLLSDRNADLVS 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           D+ D A+R+   +  SS++  +L T+ + A A P  L    EP   ++L    +I     
Sbjct: 137 DHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQRPRDLAALPIIRIESP 195

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254
           +P     F      D+ I  P +  L V +  S      LG G+A L  Y   D   +  
Sbjct: 196 MPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGVARLLHYQALDGLRHGE 253

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L  ++E+V      V+  Y        KL+ F +F
Sbjct: 254 LRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDF 288


>gi|17545353|ref|NP_518755.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17427645|emb|CAD14164.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 318

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 1/183 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A +GSF  A   L +S +++S+ ++GLE  + ++L  R  R L LTE+G+   R  
Sbjct: 13  FVQAATTGSFAAAGRVLGISSAAVSKNVAGLEKALKVRLMNRTTRTLQLTEEGAVFLRQA 72

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 L+     +     +P+G++RI+T+   GQ  L   L   L  YP + + +  D+
Sbjct: 73  RLALEALDVAVDAVAAKRDEPTGRVRISTSAAFGQQQLMPMLPGLLARYPGLSVLVDFDD 132

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  D  D A+R    ++ S+L+ R +  ++    A+P YL +   P  I++L +H 
Sbjct: 133 RIVDLVRDGYDLALR-GGHMRDSALVSRPVCRLNKILVASPGYLAHHAVPRMIEDLPQHK 191

Query: 191 LIT 193
           L+ 
Sbjct: 192 LVA 194


>gi|121606876|ref|YP_984205.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595845|gb|ABM39284.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 298

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/293 (20%), Positives = 137/293 (46%), Gaps = 13/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +R+F  +   GSFT AA+ L L +++++  +  LE  +G +L +R  R ++ ++ G 
Sbjct: 4   FHAMRLFTRIVELGSFTKAADDLQLPRATVTHAVQQLEKRLGTRLLHRTTRQVSASQDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +     S+ +P GKLR+     L ++ +   + +F   YP I++
Sbjct: 64  AYYERCRRLLADLEEAETAFANSAAQPKGKLRVDLQGTLAKHFVLPVIADFFARYPGIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R  + +  SS++ R++  +     A+  YL     P +++
Sbjct: 124 EIGMGDRFVDLVREGVDCVLRAGE-LSDSSMVARRVARLRQVTCASRDYLARHGTPDTVE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSG 240
            L  H  + F  L P+      +   ++  +     + +++    ++Y++    C    G
Sbjct: 183 ALRGHQAVNF--LSPQDGRPLPFEFLINGAVRSLQLQGQVAVSDADAYVAC---CAAHLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  LP Y V    D+   V ++         V   YP+  + + +++ F +++
Sbjct: 238 LIQLPRYHVAARLDSGCFVEVLAPWRPAPMPVSVLYPQHRQLSPRVRVFVDWL 290


>gi|227820574|ref|YP_002824545.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227339573|gb|ACP23792.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
          Length = 311

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 132/289 (45%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF    R  +FT AA +L ++Q+++S  I GLE ++G+ LF+R  R + LTE G + H
Sbjct: 14  LVVFEAAGRHQNFTRAASELGMTQAAVSYAIRGLEDQLGVPLFHRVHRAVELTEAGERFH 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++  +  E++    + +  + +A +       +   L +     P+I +++ 
Sbjct: 74  ADVSVGLARIRKSAEEIRAKGRETN--VTLAASTAFASMWMLPRLNQLREDLPEIDLRIQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +D+D+  +     +R   P          L    ++A A P Y++    P S  +L 
Sbjct: 132 TSVRDLDLDEEPIPLGVRGGDPSHWPRYHAALLADEVVNAVATPAYIEAHGLPRSPADLL 191

Query: 188 KHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           KHNLI   + + +  +   W A+  +  P    R   L +N Y+ ++Q  + G GIAL  
Sbjct: 192 KHNLIHLEEPVRRACDWAEWFASAGLSSPAQGKR---LAINDYILVIQAVLAGEGIALGW 248

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++++     +  LV +   V+      Y  +P + +   + +  R+++ 
Sbjct: 249 EHLIARQVQSGALVPVGGHVLRTGQAFYVVWPRSRELNAQARRIRDWLI 297


>gi|170731818|ref|YP_001763765.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169815060|gb|ACA89643.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 306

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 11/248 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V    SF+ AA +L ++ SS++R+I  LET++GI+L +R    L  TE G  L+
Sbjct: 9   LALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLLY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +L   Q +L     +P G LR+      G+  L   L  F+  YP +Q+ L+
Sbjct: 69  GRATRMLAELRGLQEDLHSQHDEPGGLLRVDCPAPFGRRHLMAALAAFMQRYPALQVDLV 128

Query: 128 LDNKDIDISMDY----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L +  +D+         D A+R+  P++ +  +   L        A+  YL    EP S 
Sbjct: 129 LTDSMVDLQGARLGSDVDLAVRI-GPLEDTRFVATVLAPQRRVLCASAAYLARRGEPASP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H+ + +    P     F     V     +PR    + N   ++++  + G G+A 
Sbjct: 188 DALAGHDCLAWHGAPPPGAWRFGERRHVP---AQPRF---RSNHSEALLEAAIDGLGLAH 241

Query: 244 LPDYIVKD 251
           LP ++  D
Sbjct: 242 LPTWLAAD 249


>gi|86358592|ref|YP_470484.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282694|gb|ABC91757.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 316

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 128/302 (42%), Gaps = 14/302 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V + GS + AA +L L+Q +I R +  LE  +G++LF R   GL  T+   
Sbjct: 11  WDFYRSFLTVLQRGSLSAAARELGLTQPTIGRHVDALEQAIGVELFIRSPNGLVPTDAAQ 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                + +G +R++ +  +   +L   L      YP++ I
Sbjct: 71  ALKPYAETLAATAAALLRTASGERERVAGTVRLSASEVVAVEVLPRILGPLQEAYPELHI 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +   D+    AD A+R+ +P Q  +LI R +  I +  +A   YL+    P ++ 
Sbjct: 131 ELSASDAIEDLVNREADIAVRMAEP-QQDALIVRCIGDIPIAFHAHRRYLERHGIPQTMA 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI F          +  +     P  E      + +S L+ +     G GI L 
Sbjct: 190 DLVNHRLIGFDR-----QTAYVRMVMKRYPAPEGIKFSYRTDSNLAQLSAIRAGVGIGLC 244

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK--------LKAFRNFIFLKARD 296
              + ++NP+LV ++ D        +    E+L+ + +        +K  R+++   AR 
Sbjct: 245 QIGLARENPDLVHVLPDAFEIPLGTWVVMHESLRTSPRCRVTFDALVKGLRDYVIPPARK 304

Query: 297 WK 298
            K
Sbjct: 305 RK 306


>gi|83594697|ref|YP_428449.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577611|gb|ABC24162.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 307

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 135/299 (45%), Gaps = 19/299 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   A+  SFT AAE L ++Q+++S QI GLE  +G+ LF R  + + +TE G  
Sbjct: 9   NALRAFTAAAKRLSFTQAAEDLGVTQAAVSHQIRGLEDWLGVALFRRRNKQVVMTEAGQV 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +   ++      L  +  + +G L I+T        L   L  F+   PDI+++
Sbjct: 69  YALAIGQALDEIAEATAALVRNDPR-AGMLTISTMPSFAIKWLVQRLGGFINANPDIEVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L    + ++ + +  D AIR+ + +    L    L+   +    +P  ++  R      +
Sbjct: 128 LHTTRELVNFATEGIDVAIRMTREV-GDDLHADLLLEEELFPVCSPALMRGIRPLRQPSD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS---IMQYCVLGSGIA 242
           L +H L+   D+        +W++ +D P G   +   +   YL     +Q C+   G+ 
Sbjct: 187 LSQHLLLQ--DV------GISWVSWLD-PAGALDVRPARGPGYLDSALAIQACIESQGVM 237

Query: 243 LLPDYIVKDNPNLVRIMEDVI--TPSFTVYF--CYPEALKNTGKLKAFRNFIFLKARDW 297
           L    +V+D+    R++E      PS   Y+  C P  L   G ++AFR +I  +A  W
Sbjct: 238 LGRTVMVEDDLKAGRLVEPFTLRVPSPMKYWLVCPPGHLARPG-VRAFREWILAEASKW 295


>gi|309780695|ref|ZP_07675436.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308920377|gb|EFP66033.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 302

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 19/281 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR GSF  AA      ++++SR++S LE  + ++LF R +RGL LT++G  L+  T
Sbjct: 12  FNLVARHGSFGEAARATGRPKATLSRRVSELEGSLELRLFERGSRGLKLTQEGQALYERT 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  ++  T   +   S +P G+LRI+  +   Q  +   +  F L YP++Q+++  ++
Sbjct: 72  GTLLAEIAETAAAIASGSERPRGRLRISAPMLFSQVAMGKLVATFALKYPEVQLEVTTED 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  IR+  P    SLI R  +   +   A P             EL++ +
Sbjct: 132 RGVDMIEEGYDLVIRV-NPDPDESLIGRVFLRDRLVVVATP-------------ELERPS 177

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPDY 247
                  + +     +    V  P G  RI+   V   +S + +     LG G A LP  
Sbjct: 178 GKAVVPAVLRGAGTGSAAWDVTGPDGTSRIAIRPVAHLSSLIMVRDTVRLGVGAACLPVS 237

Query: 248 IVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286
           +V  +     ++   DV +P   ++  YP     + ++ AF
Sbjct: 238 LVAHDLEAGTLVHWGDVDSPDIALWALYPSRRLLSARVSAF 278


>gi|239831215|ref|ZP_04679544.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239823482|gb|EEQ95050.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 344

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 132/300 (44%), Gaps = 28/300 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT TE G  
Sbjct: 45  DNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRV 104

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI+++
Sbjct: 105 FYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDKYPDIEVR 164

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P S  E
Sbjct: 165 LRLSDHEVDIMSEGVDVAFKL-GVLENSNLRMRGIMNCERVICAAPAYLEKHGVPQSPDE 223

Query: 186 L--DKHN--LITFGD--------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
           L  DKH+  L+ F            P+ +  F      D   G+             + Q
Sbjct: 224 LLGDKHDCLLLRFPGSKEYYWSLQTPEGLRKFEVTGPYDSDDGD------------VLTQ 271

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + G GI   P + VK+   +  LV I+E+       +   YP       K++   +F+
Sbjct: 272 WALGGRGIINKPLFEVKEYIRDGRLVPILENTPPAPIQLAAIYPHKRFQDPKVRLIIDFM 331


>gi|206562544|ref|YP_002233307.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038584|emb|CAR54543.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 300

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 133/293 (45%), Gaps = 19/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++++  +   G+FT AA+ L L + ++++ +  LE E+G++L  R  R +++T +G   H
Sbjct: 7   MQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGVRLLNRSTRRVSVTAEGEAFH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++       +    P G+LRI   + L + ++   L +F   YP I++ L 
Sbjct: 67  ARCVQLLGSIDDAFASFPKQRAVPKGRLRIDVALALAKTVVIPALPDFQQRYPQIELVLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D+  +  DC +R+   ++ SS++ R +  + M   A+P Y+     P ++ +L 
Sbjct: 127 ASDQPADLIGEGIDCVVRVGT-LKDSSMVARTVGAVPMATCASPAYIARHGLPRTLDDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGI-- 241
            H  I F     +      W     RP G+       S L  ++  +++   + G GI  
Sbjct: 186 MHRAINF--FTGRNRRVLEW---TFRPHGDTVAVKLASSLLTDNSEALLSCGLAGLGIVH 240

Query: 242 ----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               AL P     D+  LV ++  V      V   YP       K++AF +++
Sbjct: 241 ALRPALQPSI---DSGQLVELLPGVPAVPKPVSVLYPNRAHLPDKVRAFIDWL 290


>gi|167647992|ref|YP_001685655.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167350422|gb|ABZ73157.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 297

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 29/286 (10%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR G    AA      ++++SR+++ LE  +G++LF R  R L LT++G  LH  T
Sbjct: 9   FNLVARHGGVGRAARTAGRPKATLSRRVAELEASLGLRLFERGGRALKLTQEGRALHERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  +L+ T   +      P G+LRI+  +   Q  +     EF L +P++++++  ++
Sbjct: 69  AALLTELDETAANIASGGSTPRGRLRISAPLLFSQTAMGRLAAEFALKFPEVRLEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  IR+  P    +L+ R  +   +   A+P   +               
Sbjct: 129 RPVDMIEEGYDLVIRV-NPDPDETLVGRAFLRDRLVVVASPDLARP-------------- 173

Query: 191 LITFGDLIPKCMEDFN-----WLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
             T G  +P  +         W  TV    G   I     L ++S + +      G G  
Sbjct: 174 --TDGSAVPAVVRGSATGPEVW--TVANATGRSTILVDPVLSLSSMIMVRDAVRAGCGAG 229

Query: 243 LLPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286
            LP  +V  +    R+    DV  P   ++  YP     + ++ AF
Sbjct: 230 RLPVSLVSHDLAAGRLEHWGDVDGPEIALWTLYPSRRLLSARVSAF 275


>gi|50084417|ref|YP_045927.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49530393|emb|CAG68105.1| putative transcriptional regulator (LysR family) [Acinetobacter sp.
           ADP1]
          Length = 309

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 127/272 (46%), Gaps = 9/272 (3%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V    SF+ AA  L ++ S++S+QI  LE E+ + L +R  R L+LTE 
Sbjct: 3   DQLRAMGVFACVVEKSSFSGAARNLGITTSAVSQQIRSLEQEMDVTLLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+    E  +I + E      G LRIATT +LG   +   L  ++  +  +
Sbjct: 63  GQAFFHSCQEMLAAAERGKIRINELRDDLIGDLRIATTPELGALHVVPALSHWMSAHRGL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +    D++ ID+     D AIR+   I   SL    +V +     A+P YL N   P+S
Sbjct: 123 SVHFEADHRYIDLIEGRIDIAIRMSPRIDDQSLNAIPMVRVDQILVASPSYL-NQSAPIS 181

Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             E L  H+LI    +       F  L+T +    E + + LQ N+       C  G G+
Sbjct: 182 RPEDLMNHDLIPVNLMSGYQHLSFQHLSTGESIDIEMK-NRLQTNNVFIAKSLCQHGHGV 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVY 270
           A +    V+    N +LV ++ +   P+FT+Y
Sbjct: 241 ARILYLDVQKELINGSLVEVLPEWNLPAFTLY 272


>gi|298294286|ref|YP_003696225.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296930797|gb|ADH91606.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 310

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 100/194 (51%), Gaps = 4/194 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W ++ VF  VA  GS + AA +L+LSQ S+SR + GLE  +G  L  R  R ++LT
Sbjct: 1   MSDRWQEMTVFVRVAEGGSLSRAARELNLSQPSVSRIVGGLEARLGTTLLLRTTRSISLT 60

Query: 61  EQGS-KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           E G+  L R    +    E  Q      S+   G +R+A  +  G   +   L  FL  +
Sbjct: 61  EAGALYLERARYLLAEMEEAEQATRGVDSLH--GVVRLAMPVLYGARAVIPALAPFLSRH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           PD+++++I+ +   ++ +D  D +IRL   P+  S+   RKL  +     AAP YL +  
Sbjct: 119 PDLRVEIIMTDARQNLVVDGVDVSIRLGVGPLDDSTFGARKLAQVERLVVAAPAYLSSRG 178

Query: 179 EPLSIQELDKHNLI 192
           EP +  EL  H+ I
Sbjct: 179 EPATPAELAGHDCI 192


>gi|238562991|ref|ZP_00439552.2| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|238521530|gb|EEP84981.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
          Length = 293

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 125/281 (44%), Gaps = 13/281 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G +
Sbjct: 11  DRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAGER 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++++
Sbjct: 71  FYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALRVR 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAP-----HYLKNCR 178
           L       D+  D  D AIRL +  Q   L  R +   T  +   A+P     H +    
Sbjct: 131 LETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVARID 190

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++  L +        +    + D +    V RP  +P +     +   +  Q    G
Sbjct: 191 SPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPHLIADNASVLRAFAQQ---G 247

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEA 276
            G+ALLP+++V+D+     +++ +    F    VY  YP A
Sbjct: 248 GGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSA 288


>gi|167841448|ref|ZP_02468132.1| transcriptional regulator, LysR family, putative [Burkholderia
           thailandensis MSMB43]
          Length = 301

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 132/288 (45%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKL 66
           L  F   AR G+FT AAE+L+++Q ++S+Q+  LE+ +G++LF R A+ L LT  G +  
Sbjct: 12  LVFFDAAARHGNFTRAAEELNVTQGAVSKQVVKLESFLGMQLFVRDAKALHLTRAGQAYA 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R+   +    E T   ++E S      + IA         L   + +F   YP++ I++
Sbjct: 72  DRIHDMLTSCAEATAFVMKEPSPH---SITIACASGTAGMFLTPIIADFSREYPNVAIRI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++     +++    D  +   + +    +   +++   +HAY AP YL   R  +S QEL
Sbjct: 129 LVREGVFNLNTAEFDIGVYYIRDVPPPGMSGVRIIEEEVHAYCAPGYLG--RRRVSPQEL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               L+   +   + M   +W    D  I       +  NSY  ++Q  + G G+ L  +
Sbjct: 187 TSATLLVAEEQQRQWMSWRDWFHLCDSEIAYKPSRTITANSYPVLLQLALRGHGVLLGWN 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            ++    ++ +LV   +   +        +P+  ++T  +  FR ++ 
Sbjct: 247 QMITPLVESSDLVLASDASASFGGAYQLVWPDDRRDTAAVAHFREWLL 294


>gi|186471054|ref|YP_001862372.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197363|gb|ACC75326.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 297

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 118/254 (46%), Gaps = 13/254 (5%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           QL++    +SR+I+ LE ++G++LF+R  R LTLT +G         +       + E+ 
Sbjct: 24  QLNVVPMQVSRRIAALEEDLGVRLFHRTTRSLTLTAEGEAFVPYARAMVAAEAGARAEVS 83

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
            SS   SG LR+      GQ+++   L   L   P++++ L L ++ +DI     D AIR
Sbjct: 84  PSSGTASGILRLTAPSGFGQSVVLPMLPGLLEANPELRLDLDLSDRQVDIVGQGLDLAIR 143

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
           +  P++ S L+ RK+        A+P YLK    P +  ELD+H  I    +        
Sbjct: 144 I-APLEDSELVARKIAPNPRLICASPEYLKKHGRPSTSAELDQHRCIRLDSV-------G 195

Query: 206 NWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV---KDNPNLVRI-ME 260
           +W   V   +   RI   +   S  +     V G G+A+L  + V     + +LV++ +E
Sbjct: 196 SWPLVVGGKLIRKRIEGYVTTTSVEAARTAAVQGLGLAMLTSWDVFRQLADHSLVQVQLE 255

Query: 261 DVITPSFTVYFCYP 274
           D      +V+   P
Sbjct: 256 DAAMEDLSVWAVIP 269


>gi|15598761|ref|NP_252255.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107103078|ref|ZP_01366996.1| hypothetical protein PaerPA_01004147 [Pseudomonas aeruginosa PACS2]
 gi|218890208|ref|YP_002439072.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|296387931|ref|ZP_06877406.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313108916|ref|ZP_07794894.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9949718|gb|AAG06953.1|AE004777_6 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|218770431|emb|CAW26196.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310881396|gb|EFQ39990.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 306

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+VF   + SGS + AA QL +S +  S  +  LE+E+ ++LF R  R L LT +G 
Sbjct: 4   YDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  LQ    + +G L+++   D G+NLL   L EF   YP + +
Sbjct: 64  AFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           +L+L ++  D+     D AIR   P   SSL+   L   +     AAP YL    EP   
Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGAPA-DSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182

Query: 184 QELDKHNLITF 194
            +L +HN + +
Sbjct: 183 DDLREHNCLLY 193


>gi|119775523|ref|YP_928263.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119768023|gb|ABM00594.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 293

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 9/254 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V   G F+ AAE L +  + +SR +S +E ++G+ +  R  R + LT++G +
Sbjct: 6   DDLEILLTVVDCGGFSAAAELLDIQVARVSRAVSKVENQLGVSILNRTTRRIELTDEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +++  + ++      P+G+LR+        + L   +K F  +YPDI+I+
Sbjct: 66  FVESVRGGLLQIQRAEEDIITRGEVPAGRLRVDAASPFVFHQLVPLIKPFNQMYPDIRIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+  P+  S+L  R L    ++  AAP YL     P    +
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRI-GPMSDSTLHARPLGRSRLYIVAAPEYLAQRGIPRKTAD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H+ I F    P+ + ++     V     EP    L  ++  ++ Q  + G+GIA L 
Sbjct: 185 LEHHDTIGFS--APRSLNEWPLKGFVGL---EP---ALTSSNGETVRQLALSGNGIACLS 236

Query: 246 DYIVKDNPNLVRIM 259
            ++V  +    R+M
Sbjct: 237 GFMVNKDIEEGRLM 250


>gi|299770824|ref|YP_003732850.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700912|gb|ADI91477.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 303

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 1/193 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V    SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+
Sbjct: 4   ALDFNTLKVFIAVVERESFVGASKILEMPTSNVSRCISQLEEKLDLQLIERSTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   YPD
Sbjct: 64  AGQLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVIADFACQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  + +    +   D  D AI + R  + +S  I R LVTI     AAP  ++    P
Sbjct: 124 LEISCVTNLSGFESLRDDLDLAIIITRGQMDNSDYIARHLVTIPCTIVAAPSLIQRYDTP 183

Query: 181 LSIQELDKHNLIT 193
             IQ+ ++   IT
Sbjct: 184 THIQQFEELPCIT 196


>gi|222110715|ref|YP_002552979.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221730159|gb|ACM32979.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 317

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 135/298 (45%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  VA  G F  A   L + +S +SR+++ LE  +G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVAERGGFAAAGRALGIPKSRLSRRVAELEARLGVRLLQRTTRTLSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +    +  Q  + +   +P G +R+   + L Q ++   + +FL  +P ++
Sbjct: 63  EAYLRHCQAMRDSAQAAQDTVDQVQTEPRGTVRVTCPVTLAQTVVAELMPQFLQRHPQVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +++  +  D A+R+R  ++ S S++ ++L  + +   A+P  L+    P S
Sbjct: 123 LEMQVTNRVVNVVEEGVDVALRVRPTLEDSGSMVVKRLDEVRLLLVASPEQLRRQGTPTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235
           +++L         D +     D      +  P G        PR      +  L++    
Sbjct: 183 LRDL------ALLDTLAMSAADGRASLRLIGPEGREETVHFTPRYVA---DDLLTLKFAA 233

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G+G+  +PDY+         LV ++     P   V+  +      +  +++F +F+
Sbjct: 234 LAGTGLCWMPDYMCMSELQEGRLVHLLPQWTQPRSVVHAVFASRRGLSPAVRSFLDFL 291


>gi|319796268|ref|YP_004157908.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598731|gb|ADU39797.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 296

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 124/285 (43%), Gaps = 8/285 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  +A  GS T AAE L  S  ++ R ++ LE  +G++LF+R  R L+LTE+G 
Sbjct: 4   FKAMQTFVQIADQGSMTRAAESLGTSLPAVVRSLAALEAHLGVRLFHRTTRRLSLTEEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  EV    +     L   + +P+G+L I   +  G   +   +  F+  Y  ++ 
Sbjct: 64  HYLPSAREVLLAADAADRALNAEAREPAGQLTITAPVLFGHMYVAPAITRFMKRYDKVRC 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L ++ +++  +  D  IR+  P++ SSL+ + L TI      +P YL     P   +
Sbjct: 124 SVLLYDRAVNLLEENIDVGIRI-SPLEDSSLVAQTLGTIRRVVAVSPDYLARHGTPQHPR 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL+    +  G +       F+      + I     + L+ N     ++ C  G G  + 
Sbjct: 183 ELNGAPCVR-GRIDAPPQWQFH---EAGKTISVTPSNRLEFNHLAPAVEACAAGMGFGIF 238

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             Y V        L  ++ED   P   V   YP A     + +AF
Sbjct: 239 FSYQVLPYVAQGRLAIVLEDFEPPPRPVSVIYPNARLLPARTRAF 283


>gi|298291731|ref|YP_003693670.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928242|gb|ADH89051.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 297

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 1/187 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA  GS T AA  L  S  SI+R ++ LE  VG++L  R  R   LT+ G  
Sbjct: 5   DDIEAFLAVAEKGSQTAAARHLRRSLQSINRSLAALERSVGVELVRRTTRHSHLTDAGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        ++   ++E  ++  +PSG LRIA  +      +   +  F+  +P ++I+
Sbjct: 65  FYERVKPALAEINDARLEAAKARGEPSGLLRIAAPVFFAPAYVVPAIAAFMERHPGVEIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  D  D A+R+R+ +  SSL+ R+L  + + A+ +P Y      P    +
Sbjct: 125 LKVSDRMVNLLEDGIDVAVRIRE-MADSSLMTRRLGELRVVAFGSPDYFARHGRPQHPDD 183

Query: 186 LDKHNLI 192
           L +H  +
Sbjct: 184 LVRHECV 190


>gi|294648659|ref|ZP_06726121.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292825449|gb|EFF84190.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 300

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 134/272 (49%), Gaps = 13/272 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE+L  + S +SR +S LE+++ + L  R  R L LT
Sbjct: 1   MKSSIEELLAFITIVDTGSFVAAAERLGQTASGLSRSLSRLESKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ + L   +  L  S    SG +R+ + +    +++   ++ F   YP
Sbjct: 61  QEGQQFLNHARKILNDLNAAEEALLRSDQDTSGIIRVDSAVPFILHVIAPLMQLFHQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+I+L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P
Sbjct: 121 NIEIELNSNDQVIDLLEHKTDVAFRFGE-LHDSSLHAKLVCQSRLYLVASPAYLTQRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLG 238
              Q+L  H++I F     + +    W   VD   GE  +  S ++ +S  ++ Q C+ G
Sbjct: 180 QHSQQLAMHDVIGF----TRPLYINKWPIKVD---GEYFVAQSSIKASSGETVRQLCLRG 232

Query: 239 SGIALLPDY-IVKD--NPNLVRIMEDVITPSF 267
            GIA L ++ I KD     LV + ED I  S+
Sbjct: 233 LGIARLSEFEIWKDLEEGRLVALFEDQIEHSY 264


>gi|270260953|ref|ZP_06189226.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044437|gb|EFA17528.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 303

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF      GSF+ AA  L ++ ++ S  +  LE  +G++L  R  R L LTE+G +  
Sbjct: 7   LDVFVRTVDGGSFSEAARALDITPAAASIAVKRLEQRLGVRLLVRSTRSLRLTEEGRRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L   +  ++E     SG L+I+   D G+NLL G L EF L +P IQ+QL+
Sbjct: 67  DSARLALGALAEGEQAIREKHQGLSGVLQISAPSDFGRNLLLGWLDEFKLQHPHIQLQLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186
           ++++  D+  +  D A+R  + +  SSL+   ++  H     A+P YL+    P +  EL
Sbjct: 127 INDRQADLFREPVDIALRFGQ-LADSSLVALPILPQHRRLICASPAYLQRYGVPQTPAEL 185

Query: 187 DKHNLITF 194
            +H ++ +
Sbjct: 186 AQHGILIY 193


>gi|269960021|ref|ZP_06174398.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835320|gb|EEZ89402.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 293

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 21/294 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V   G F+ AAE L +  + +SR +S LE ++G+ L  R  R + LT++G +
Sbjct: 6   DDLEILLTVVDCGGFSAAAEALDVQVARVSRSVSRLEQQLGVSLLNRTTRRVELTDEGRR 65

Query: 66  L--HRVTSEVY-HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              H  T+  Y  + E   + L E+   P G LR+        + L   +K F   YP I
Sbjct: 66  FVEHVRTAMQYIQQAEECILSLGET---PQGTLRVDAASPFVFHQLVDLIKPFREAYPQI 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L  +   +D+     D AIR+ K +  S+L  R L    ++  A+P YLK+   P  
Sbjct: 123 ELELTSNEGFVDLLEKRTDVAIRIGK-LSDSTLHARALGKSELYLVASPDYLKHRGIPQK 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H++I F +  PK +   N L     P  EP  + L  N   +I Q  + G+GIA
Sbjct: 182 PTDLAHHDIIGFTE--PKIL---NKLPLKGAPEIEP--TLLSSNGE-TIRQLALAGNGIA 233

Query: 243 LLPDYIVK---DNPNLVRIME-DVITPSF--TVYFCYPEALKNTGKLKAFRNFI 290
            L  ++V+   +   LV I+E D IT +    +   Y ++   + ++ AF +FI
Sbjct: 234 CLSGFMVRKDMEEGRLVPILESDKITNTGREQINAVYYKSSSVSLRISAFLDFI 287


>gi|212637277|ref|YP_002313802.1| Substrate-binding transcriptional regulator, LysR family
           [Shewanella piezotolerans WP3]
 gi|212558761|gb|ACJ31215.1| Substrate-binding transcriptional regulator, LysR family
           [Shewanella piezotolerans WP3]
          Length = 299

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 9/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F V+A  GSFT AAE+L  S+S +S+Q++ LET +G+ L  R  R   LT+QG   +
Sbjct: 10  VRAFTVIAEQGSFTLAAEKLGCSRSHLSKQLTQLETYLGVTLITRTTRAQRLTDQGEFFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                    +E    +  +++    G + I      +G+ ++   + +F+  +P+I I L
Sbjct: 70  ERCQHALDVMEQAVAKTVDNAQNLQGNININCVGGYIGEEIVTRLVNDFISAHPNISINL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+ +D+ D   R+ + ++ S L+ RKL+ I     AAP YL+    P   + L
Sbjct: 130 DFSSQRVDLVLDHFDLVFRMGE-LEDSGLVARKLMDITNCTLAAPTYLEQKGIPSHPKAL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ I  G +       F   A   +          +  +   +    + G GI  LP+
Sbjct: 189 HEHSCI-IGSI---NHWSFQHKADAQQKAEVAITGKFRCKNGRVMKSSALAGHGIVRLPE 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               D      LV + +  + P+  +Y  Y +      +L+ F  F
Sbjct: 245 LYCADELRRGELVHVFDQWLIPATPLYLLYSKDKFQPARLREFIAF 290


>gi|167579536|ref|ZP_02372410.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 304

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 95/196 (48%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V    SF  AA QL +S ++++R I  LE  + ++L  R  R L+LTE G +  
Sbjct: 7   MRVFTRVVDLASFNLAARQLGMSAAAVTRSIGMLEAHLNMRLLNRTTRSLSLTEAGREYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  KL+  +  L +++  P G LRIA+++    + L   L  + +L+P +   + 
Sbjct: 67  DGCRAIIDKLDEIESNLVQATRDPRGTLRIASSMSFAASGLGPLLAAYRILHPRVAFDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+     D      + + SS+L+ R L TI     A+P YL     P +  EL 
Sbjct: 127 TFDTHVDMVEGAYDVCFSDDRHLASSTLVSRALTTIREVTVASPAYLARHGTPHNPAELG 186

Query: 188 KHNLITFGDLIPKCME 203
           +H+L+   D   +  E
Sbjct: 187 EHSLLAISDGTARSWE 202


>gi|152972165|ref|YP_001337311.1| putative DNA-binding transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|329997570|ref|ZP_08302842.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150957014|gb|ABR79044.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328538989|gb|EGF65039.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 303

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 128/301 (42%), Gaps = 37/301 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R L LTE G   +
Sbjct: 1   MSVFAKVVELGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSLGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  + +    +L   +  P G LRI  +  + QN+L     + L  YP + + L+
Sbjct: 61  QGCRRMLFEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLARITAKMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L ++ M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVLCAAKSYLAQAGNPEKPADLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP------IGEPRISC-------LQVNSYLSIMQY 234
            H                 WL    RP      I    IS           N  ++++++
Sbjct: 180 GH----------------AWLEYSVRPDNEFVIIAPEGISTRLTPQGRFVTNDPMTLVRW 223

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNF 289
              G GIA +P     +  N  R   +++ PS+      VY  Y E  K   K++   N+
Sbjct: 224 LTAGVGIAYVPLMWAIEEIN--RGELEILLPSYQSDPRPVYALYTEKDKLPLKVQVCINY 281

Query: 290 I 290
           +
Sbjct: 282 L 282


>gi|300693936|ref|YP_003749909.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299075973|emb|CBJ35285.1| Transcriptional regulator, LysR family [Ralstonia solanacearum
           PSI07]
          Length = 305

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 8/220 (3%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           L ++ +++S+ ++GLE  +G++L  R  R L+LTE+G+   R        L+T    +  
Sbjct: 16  LGVTSAAVSKNVAGLERALGVRLMNRTTRTLSLTEEGAAFLRQARVALEALDTAIDSIAA 75

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
               PSG++RI+T+   G+  L   L   L  YP + +++  D++ +D+  +  D AIR 
Sbjct: 76  QRAAPSGRVRISTSWAFGREQLMPALPGLLARYPGLSVEVDFDDRIVDLVREGYDLAIR- 134

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT----FGDLIPKCM 202
              I  S+L+ R +  +++   A+P YL     P    EL  H LIT     G L P   
Sbjct: 135 GGSIPDSALVSRPIFRLNLVVVASPDYLARHGIPRVPAELRLHRLITRRFLGGRLAPWGF 194

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + +   T   P      + L +++  +++Q    G G+A
Sbjct: 195 REEDGSITTFDPADS---AVLTLSAPEAVVQAACDGVGVA 231


>gi|239503659|ref|ZP_04662969.1| transcriptional regulator [Acinetobacter baumannii AB900]
 gi|193077051|gb|ABO11810.2| putative transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 301

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 134/261 (51%), Gaps = 14/261 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+  A   +++ S++S+ IS LE  +G++L  R  R   LT +G + 
Sbjct: 11  ELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++ + L+  +  +  + + P G++RI T+     + L   +  F   Y +I+++ 
Sbjct: 71  YEQGIQILNGLDELEQSVTANHI-PKGRIRIHTSFSYWTHFLLPCISLFNQRYQEIELEA 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ I++     D AIR   P++SS+L+ R L + +     +P Y++    P    EL
Sbjct: 130 HLSDEVINLVEQRIDVAIRT-GPLKSSNLVARSLGSTYKQYVCSPLYIEKYGCPEHPDEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +H L+     +    ++  WL   AT +  +   ++  L+VN   +I+Q  + G+GIA 
Sbjct: 189 HEHQLLD----VSYQRQNKTWLFKKATQEISLTPSKV--LKVNHGEAILQLALAGAGIAQ 242

Query: 244 LPDYIVKD---NPNLVRIMED 261
           L ++ +++      LV+I+ED
Sbjct: 243 LNEFQIRNALQQKQLVKILED 263


>gi|167835260|ref|ZP_02462143.1| glycine cleavage system transcriptional activator [Burkholderia
           thailandensis MSMB43]
          Length = 320

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA +L ++  ++S Q+  LE E+G++LF RH + L LTE G +
Sbjct: 10  NALRVFEAAARHESFSRAANELSVTHGAVSHQMRALEAELGVRLFVRHGKRLALTEAGGR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S      +L ++T        +   +  F+  +P+I ++
Sbjct: 70  YAQQVRAALTLLADATREIRASDR--DKRLVVSTLSSFAARWITPRIGPFIERHPEIDLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 128 LRASDSLVDFTRDDVDVAIRFGYGVYPGLYVE-PLLDETFFPVCAP-TLNGGVLPETPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 186 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 240

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++AFR ++ 
Sbjct: 241 RSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLL 289


>gi|254250545|ref|ZP_04943864.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124879679|gb|EAY67035.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 313

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 129/281 (45%), Gaps = 17/281 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR GSF  AA      ++++SR+++ LE  + ++LF R +RG+ LT++G  L+  T
Sbjct: 21  FNLVARHGSFGEAARVADRPKATLSRRVAELENSLSLRLFERGSRGVKLTQEGRALYERT 80

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  +   +   S +P G+LRI+  +   Q  +   +  F L YPD+++++  ++
Sbjct: 81  GALLAELADSASAIAAGSERPRGRLRISAPMLFSQFAMGRLVATFALQYPDVRLEVTTED 140

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  IR+  P    SLI R ++   +   A P   +              +
Sbjct: 141 RPVDMIDEGYDLVIRV-NPDPDESLIGRVILRDRLVVVAKPGLARPG-----------GD 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN--SYLSIMQYCV-LGSGIALLPDY 247
             T    + +   D      V  P G  RI    V   S LS+++  V LG G A LP  
Sbjct: 189 APTPAPAVVRGANDMRAAWEVMGPDGTARIPVEPVARLSSLSMVRDTVRLGLGAACLPIS 248

Query: 248 IVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286
           +V  +     ++   DV      ++  YP     + ++ AF
Sbjct: 249 LVSRDLAAGTLVSWGDVPASDIALWALYPSRRLLSARVSAF 289


>gi|309779713|ref|ZP_07674471.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308921512|gb|EFP67151.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 306

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 124/274 (45%), Gaps = 10/274 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  +   GS   AA   +L  ++++R++  LET +G +L  R AR L  T +G  
Sbjct: 3   DDLALFVSIVDHGSLQAAARHANLPPATLTRRLQKLETALGCQLLLRSARSLKPTPEGQL 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   L  T   L +   +  G LR+   ++L + LL      F+  +P+I+++
Sbjct: 63  YYEQCRPLLTALAQTTATLDDDLNQVKGTLRVLAPLNLSRGLLAPAYASFMAAWPEIRLE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L N++ D+    AD AIR+ +      L QR+L  I M   A+P Y+     P    E
Sbjct: 123 LSLSNRNEDVWRHGADLAIRVGQ-QDDPKLRQRRLGVIGMVLVASPAYVAEHGAPTHPHE 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    L        +   T++ +P G   ++ +++   L+       G G+   
Sbjct: 182 LQAHRLLVSSPLSTWRFTSPDGEETIELQPHGRCDLNDIELGVTLAET-----GLGLLYC 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           P  +     +   LVR++ D  TP   +Y  +P+
Sbjct: 237 PRTLCHQALEAGRLVRLLPDWRTPQRPIYAVWPQ 270


>gi|262042799|ref|ZP_06015952.1| HTH-type transcriptional activator AaeR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039866|gb|EEW40984.1| HTH-type transcriptional activator AaeR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 303

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R L LTE G   +
Sbjct: 1   MSVFAKVVELGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSLGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  + +    +L   +  P G LRI  +  + QN+L     + L  YP + + L+
Sbjct: 61  QGCRRMLFEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLARITAKMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L ++ M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRV-GALQDSSLFSRRLGSMPMVLCAAKSYLAQAGNPEKPADLA 179

Query: 188 KHNLITF 194
            H  + +
Sbjct: 180 GHAWLEY 186


>gi|56461591|ref|YP_156872.1| LysR family transcriptional regulator [Idiomarina loihiensis L2TR]
 gi|56180601|gb|AAV83323.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR]
          Length = 285

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 132/272 (48%), Gaps = 23/272 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F       S + AA +LH++ S+IS+Q+  LE + GI LF+R+ R L+LTE G   +
Sbjct: 9   LKAFTRTVELNSMSAAANELHMTVSAISQQLQRLENDNGISLFHRNTRSLSLTEAGQVFY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++       Q    + + +P G+++I   +  G  LL   LK+    + ++  QL 
Sbjct: 69  QSCLDMLAIAAKNQERWDQLTNQPQGQIKIIAPVGFGGGLLSEPLKQLQHEFANVSFQLH 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLSIQEL 186
           + ++ ID+    AD AIR+  P+  S+L  R L   HM    AA H              
Sbjct: 129 MTDEPIDLITAGADLAIRI-GPLADSTLYARHLADWHMVPCIAAEH------------PA 175

Query: 187 DKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            ++++ +F DL   C +     L   D P  +P++    +N+  +++Q  + G G ALLP
Sbjct: 176 AENSIKSFDDLPEGCFIGHIPSLPNKDFP--KPKV---LLNNMQTVVQLTLDGVGYALLP 230

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
              +K   ++  L+R++ +     ++V+   P
Sbjct: 231 QPEIKHYIESGRLLRLLPEWEGSPYSVHAVLP 262


>gi|16263531|ref|NP_436324.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|14524232|gb|AAK65736.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 369

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 122/263 (46%), Gaps = 17/263 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA  GS T  A  L  + S +SR I+ LE  +G +L  R  R L LT++G    
Sbjct: 62  VEAFITVAEKGSMTEGAVTLSTTPSVLSRAITRLEARLGAQLMRRTTRRLRLTDEGRAYL 121

Query: 68  RVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  ++  +  +Q  +    +G +RI+     G   L   L  F  ++P++Q++L
Sbjct: 122 EQARAAFSMIDDAERAIQGPTGASLTGHVRISVPTTYGHYRLPAMLDRFTQIHPEVQVEL 181

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+++D+  +  D AIRL  P   S L+ RKL    +   A+PHYL+    P S+++L
Sbjct: 182 SITNRNVDLVAEGYDLAIRL-GPFPDSGLVARKLEDAPLRLVASPHYLERAGVPRSVEDL 240

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             H  + F  ++P       WL  V+       P G  R+     +  L ++     G G
Sbjct: 241 ATHQCLPF--VMPSTGRCAPWLFRVEGRDVDWTPPGRIRV----FDDVLGVVSLAENGLG 294

Query: 241 IALLPDYIVK---DNPNLVRIME 260
           I    D+IV+   +   LV ++E
Sbjct: 295 ICQTYDFIVRGRIEQGRLVDVLE 317


>gi|50085801|ref|YP_047311.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531777|emb|CAG69489.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 318

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 98/191 (51%), Gaps = 3/191 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GSF+  + Q+  + S++SR IS LE  +G +L  R  R L L+E G ++
Sbjct: 12  EMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESGQQI 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++ +  +       +   +P G +R++    +G  ++  ++ EFL  YP I +Q+
Sbjct: 72  YENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKIDVQM 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +L+++ +D   D  D AIR+  +P     L+ R+L+ I     A P YL     P    +
Sbjct: 132 LLEDRYVDFIDDGVDLAIRITDQP--PGGLMGRRLIEIGHLLCATPEYLAMHGTPEHPHD 189

Query: 186 LDKHNLITFGD 196
           L +H  I  G+
Sbjct: 190 LKQHACIYLGE 200


>gi|331008324|gb|EGH88380.1| LysR family transcriptional regulator protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 310

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 92/189 (48%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  V R  SFTHAA +L ++ S++S  I  LE  +G++L  R +R ++ T+ G
Sbjct: 13  DLADLNSFLAVERMRSFTHAAVELGITTSALSHSIRNLENRLGVRLLNRTSRTVSATDAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L +  +  ++++      L     +PSG+LR+    D  + L    L  FL  YP++ 
Sbjct: 73  AALAKRLAVGFNEISGALAALDRHRDRPSGRLRLNVLSDGARLLFTKYLPPFLEAYPEVS 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D++ +DI     D  +R    I    +  R    +   A A+P YL      +  
Sbjct: 133 VEVAVDDRMVDIVSAGFDAGVRFGNTIPEDYIAVRLSEDLRWVAVASPRYLNANPRIVIP 192

Query: 184 QELDKHNLI 192
           ++L  HN I
Sbjct: 193 EDLKNHNCI 201


>gi|332288874|ref|YP_004419726.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
 gi|330431770|gb|AEC16829.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
          Length = 288

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 129/292 (44%), Gaps = 20/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +   GSF+ AAEQL+LS S +S+ +S LE  +  KL  R +R L+LTE G+  +
Sbjct: 7   MKVFRQIVEKGSFSKAAEQLNLSTSMVSKHLSNLEHYLQAKLLNRTSRRLSLTEVGADYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +        LE  +    + ++ P G L+I   +          L E+   Y  + +QL 
Sbjct: 67  QRCVAALDDLEEAKQIASQGTIHPQGTLKITLPVWFATRRFAEFLAEYQHRYSQVNLQLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN   D+     D A+++     + +LI + L  +  H  A+P Y++            
Sbjct: 127 LDNHHTDLVGQGFDLALKVTAH-PAENLIVKPLAGMPFHWVASPKYIQQ----------- 174

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
                 FG L  +       L      +    +  +  N+ L + Q  +   GIA LP +
Sbjct: 175 ------FGQLNEQSWAQHKGLIPTYTHVEHHFVDIISSNNTLMLYQLALAAQGIAYLPSF 228

Query: 248 IVKDNPNL--VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           + +D+     ++I+      + T+Y  Y      + K+++F +F+  K  ++
Sbjct: 229 LCEDDLQRGDLQIVPHPANRNHTLYAAYMNREFMSAKVRSFIDFMAEKFSNY 280


>gi|254524615|ref|ZP_05136670.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219722206|gb|EED40731.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 301

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 127/289 (43%), Gaps = 14/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA  GSF  AA  L LS   + + I  LE  +G++L  R  R  +LT+ G    
Sbjct: 7   LRTFAKVAEVGSFAAAAAVLDLSPQLVGKHIQALEQHLGVRLLNRTTRKQSLTDFGQAFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  +   + +  +P G+LRI+  +  G + L   +  ++  YPD+Q+ L 
Sbjct: 67  ARARVILEEVEGAEQLAEVARGRPMGRLRISAPVTFGVHALGPAVVAYMQDYPDVQVDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N  ++I  D  D   R    +  S L+ R+L    +   A+P Y+ +    +   +L 
Sbjct: 127 LSNSLVNIVEDGYDLVFRTGD-LADSGLVARRLGPYPLVLCASPAYVASRPAIVHPTDLS 185

Query: 188 KHNLITFGDLIPKCMEDF----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  + F   I +    F      + TV      P  S   VN    ++   V G G+ L
Sbjct: 186 RHECLGFAHSIIRTRWSFRDADGSVLTV------PVSSRFMVNQAEPLLTAAVGGLGLIL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            P  ++       +LV ++      S  ++  YP   + T KL++F +F
Sbjct: 240 QPFEMLSAALARGDLVEVLPTFEPVSTWIHLLYPRDRQVTPKLRSFVDF 288


>gi|184157770|ref|YP_001846109.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332876457|ref|ZP_08444224.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209364|gb|ACC56762.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322508082|gb|ADX03536.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323517662|gb|ADX92043.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735315|gb|EGJ66375.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 306

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 139/299 (46%), Gaps = 33/299 (11%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +   GSF+ AA+QL++ +++ S  I  LE+ +  +L  R  R +  +  G 
Sbjct: 4   FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPDI++
Sbjct: 64  AFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R  + +  S+LI R L  +     A+P YL     P   +
Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLADMPQVICASPDYLNKHGTPQQPE 182

Query: 185 ELDKHNLITFGD-----------LIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLS 230
           +L  H  + F             ++    +D+   +W+A  D             N  LS
Sbjct: 183 DLLSHYCVNFFSTSGGRNYPFELMVNSKKQDYFLKSWIAVNDAE-----------NYVLS 231

Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +Q    G+G+  +P Y V +   N  LV+++ +   P  +V   YP+  + + +++ F
Sbjct: 232 ALQ----GAGLIQVPRYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVF 286


>gi|317407411|gb|EFV87374.1| hypothetical protein HMPREF0005_05338 [Achromobacter xylosoxidans
           C54]
          Length = 311

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 143/286 (50%), Gaps = 15/286 (5%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS + A+    +S +S+SR+IS LE  VG +L  R  R L LTE G + +     +  ++
Sbjct: 28  GSLSGASRVSGISLASVSRRISALEERVGTRLLVRSTRALRLTEAGQRYYAEAKRLLAEM 87

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           +  +  ++  + +PSG+LR+      G+  LQ  L +FL+ +P + + L L ++ +++  
Sbjct: 88  DELESSMRIDAAEPSGRLRVTAPTLYGRVHLQPLLAKFLMQHPKVALDLHLLDRPVNLLE 147

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           +  D A+ L     SSSL+ R+L +I     A+P YL     P S+Q+L +H+ + +  L
Sbjct: 148 EGIDLAV-LVGEQPSSSLVARRLGSIRWVLSASPDYLARRGIPHSLQDLAQHDGLVYSHL 206

Query: 198 IPKCMEDFNWLATVDRPIGEP---RISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKDNP 253
                ED  W   +D+  G+P   R+S  ++ N+   ++     G+GI   P + + D+ 
Sbjct: 207 ---ATED-AW-TLIDK--GKPTIVRVSTRMRSNTVDGVVTAAAAGAGIVYAPAWAIADHV 259

Query: 254 NLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              R+   ++   TP   V+          GK+++   F+  K R+
Sbjct: 260 AAGRLRPLMVASETPPRPVFALMTHQRLMAGKVRSLVEFLVEKLRE 305


>gi|260555363|ref|ZP_05827584.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           19606]
 gi|260411905|gb|EEX05202.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           19606]
          Length = 306

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 139/299 (46%), Gaps = 33/299 (11%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +   GSF+ AA+QL++ +++ S  I  LE+ +  +L  R  R +  +  G 
Sbjct: 4   FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   ++   +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPDI++
Sbjct: 64  AFYERCTQRLSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P   +
Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGTPEQPE 182

Query: 185 ELDKHNLITFGD-----------LIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLS 230
           +L  H  + F             ++    +D+   +W+A  D             N  LS
Sbjct: 183 DLLSHYCVNFFSTSGGRNYPFELMVNGKKQDYFLKSWIAVNDAE-----------NYVLS 231

Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +Q    G+G+  +P Y V +   N  LV ++ +  +P  +V   YP+  + + +++ F
Sbjct: 232 ALQ----GAGLIQVPHYHVANELKNERLVEVLSEWESPKMSVSALYPQHRQLSPRVRVF 286


>gi|119470640|ref|ZP_01613308.1| putative LysR-family transcriptional regulatory protein
           [Alteromonadales bacterium TW-7]
 gi|119446110|gb|EAW27388.1| putative LysR-family transcriptional regulatory protein
           [Alteromonadales bacterium TW-7]
          Length = 295

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 128/290 (44%), Gaps = 18/290 (6%)

Query: 6   DKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL   +VF  VA SGSFT +AE+L +S+  ++R I   E  +  +L +R  R +TLT  
Sbjct: 2   DKLTAAQVFVDVAYSGSFTASAERLEMSRPMVTRHIESAEAWLNTRLLHRTTRKVTLTTA 61

Query: 63  GSKLHRVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           G        E+   L      +E  +S  + SGK+R+AT++ LG   L      F+  +P
Sbjct: 62  GEA---CLPEIEQWLAQANRLVEQTKSQQQLSGKIRVATSMSLGFAQLAPIFTRFMKRHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++QI + L++   D+     D AIR+       SLI + +        A+  YL +    
Sbjct: 119 NVQIDIDLEDSTTDLIEQRVDLAIRIAAN-PDPSLIGKPIAECESILVASASYLADYPPI 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + Q+L  H  + +     K  + + W            + C L  N   +++   + G 
Sbjct: 178 TTPQQLSAHQCLGY-----KNFDRYIWHLHNGNEFQSVDVKCNLSANEATTLLHAAIAGG 232

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GI++ P Y+      +  L R++    +    +Y  YP     +  ++A 
Sbjct: 233 GISVQPTYLANQYILDGRLQRVLAPWTSNPMKIYVLYPSRQHLSATVRAL 282


>gi|13471779|ref|NP_103346.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022523|dbj|BAB49132.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 300

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 131/285 (45%), Gaps = 9/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V  SGS + AA ++ LS+S IS ++S LE  +G +L  R  R L +TE G   +  
Sbjct: 9   AFVAVTESGSISEAARRMGLSKSVISERLSELERSLGTRLLDRTTRKLFITEAGRGFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++   + E+ E   + +G LRI+     G   L   L  FL  +P I++ L +D
Sbjct: 69  AKRIMQEVADAKAEIAEDRGELAGPLRISAPTSFGILHLGPALYGFLARHPGIELTLDVD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ + +  D  D  +R    +    +I +KL +      A+P Y++    P +  +L +H
Sbjct: 129 DRFVSMVADGYDAIVRHGPVVDGGPVIVKKLASSRRFLVASPDYVERFGLPATTDDLKRH 188

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             I +           +W   + R +   R ++ L+VN+ + +    + G G+ALLP Y 
Sbjct: 189 KGIIY-----SIRGAADWRFKISRRLVTIRPVTALRVNNGILMRDAALAGLGLALLPAYF 243

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++    +  L  I         T+Y   PE  + + KL+A   ++
Sbjct: 244 IRTEIADKRLTVIDVGAEPEGATIYIACPEDRRGSAKLRALTAWL 288


>gi|59714094|ref|YP_206869.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59482342|gb|AAW87981.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 302

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 132/269 (49%), Gaps = 18/269 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DW    +F  VA+  SF+ AA +L    +++SR+I  LE+++G +LF R+ R +TLT
Sbjct: 2   MKEDW---LLFAKVAQYQSFSEAARRLSTPTTTVSRRIQQLESQLGERLFIRNTRSVTLT 58

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L   T  +   LE  Q  ++  S + SGKL+++T+  L Q LL   +  F   +P
Sbjct: 59  EFGQRLLPKTKLLEMALEELQSTIESHSQEISGKLKLSTSDTLSQFLLPSLISSFSSQHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I   +   N++  +  +  D + R+ + ++ S+LI  KL  I     AAP +++     
Sbjct: 119 LINFDISSSNRNEQLLNENIDFSFRIGQ-LEDSNLIAYKLCEIEYVLVAAPSFIEKSTIG 177

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCV 236
           ++ + L +H  I     G  +P       W  + D  + E       +V++         
Sbjct: 178 ITPETLIQHPCIIIDIDGKEVP-------WFVSSDDHVLELTTYKKYRVDNLFIAKSLAE 230

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDV 262
            G+GI LLP ++ K+      LV ++++V
Sbjct: 231 SGNGITLLPKFVAKEAIKTNTLVTVLDNV 259


>gi|52840529|ref|YP_094328.1| LysR family transcriptional regulator [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52627640|gb|AAU26381.1| transcriptional regulator, LysR family [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 287

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  V     F  AA +  +S +++SRQI+ LE E+  +L  R  R L+LT+ G+
Sbjct: 4   FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   +   +L   +I +  S  +  G L + ++       L   L EF+ L P +QI
Sbjct: 64  RYYQQCKKTLLELNEAEIAIANSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123

Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  +  D++ +  D    + +  P     L+++++ T      A+P YL     P +
Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGP---PELVRKRVSTTRYVLCASPDYLAKNGIPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL KH  IT     P  +  F      ++   EP    L +N   ++ +  +LG GI 
Sbjct: 181 PSELGKHRYITHSMRNPDNLVTFK---DNEQIYVEP---VLWLNDSRALCECALLGMGII 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L +YIV +   +  L+ ++ +    S +VY  Y  +     K++ F +F
Sbjct: 235 KLHEYIVTEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284


>gi|148358484|ref|YP_001249691.1| LysR family transporter transcriptional regulator [Legionella
           pneumophila str. Corby]
 gi|148280257|gb|ABQ54345.1| transcriptional regulator, LysR family [Legionella pneumophila str.
           Corby]
          Length = 287

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  V     F  AA +  +S +++SRQI+ LE E+  +L  R  R L+LT+ G+
Sbjct: 4   FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   +   +L   +I +  S  +  G L + ++       L   L EF+ L P +QI
Sbjct: 64  RYYQQCKKTLLELNEAEIAIANSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123

Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  +  D++ +  D    + +  P     L+++++ T      A+P YL     P +
Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGP---PELVRKRVSTTRYVLCASPDYLAKNGIPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL KH  IT     P  +  F      ++   EP    L +N   ++ +  +LG GI 
Sbjct: 181 PSELGKHRYITHSMRNPDNLVTFK---DNEQIYVEP---VLWLNDSRALCECALLGMGII 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L +YIV +   +  L+ ++ +    S +VY  Y  +     K++ F +F
Sbjct: 235 KLHEYIVAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284


>gi|116255135|ref|YP_770969.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259783|emb|CAK02875.1| putative LysR-family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 306

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 133/288 (46%), Gaps = 8/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD L++F +V R  S T AA +L +S S++SR+++ LE  VG  L  R   GL LT  
Sbjct: 8   LDWDDLKLFLIVVRCKSVTGAARELKVSHSTVSRRLARLEYTVGGALVERTRDGLLLTPA 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R   E+ + +   + ++     +  G +R+AT   +    L   L E    YPD+
Sbjct: 68  GLVTMRRAEEIENGVNALRSDVSNRD-EVRGTVRLATMEGIATLYLSERLVELSSRYPDL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+   + + ++   AD  +   KP   ++L  + +       +A+  YL+    P  
Sbjct: 127 DIELVTSPQTVRVARREADLFLSFFKP-HGTALDSQLIGRFKTGLFASQAYLERNGVPSQ 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  + + + +   +E   WL  +   +  P +     NS +S M     G+GI 
Sbjct: 186 AADLREHRFVGYIEEL-VLLESVLWLEEL---VPAPTM-AFSSNSMMSQMFAASAGAGIV 240

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP++       L+ ++E+ ++    ++    + L    +++A + F+
Sbjct: 241 ALPEFARSLKLGLIPVLEE-LSGEREIWMSAHQDLAYLPRVRAVKQFV 287


>gi|34496846|ref|NP_901061.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34102702|gb|AAQ59067.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 295

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 129/290 (44%), Gaps = 41/290 (14%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   V A++   GSF  AA  L L+ S +S  +S LE+ +G+ L YR  R L+LT  
Sbjct: 3   DELRALAVFAKTTETGSFRAAARALGLAPSVVSHHVSQLESRLGVALLYRSTRRLSLTPD 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +    ET   EL   + +P+G LR++      +  L  +L  F   +P +
Sbjct: 63  GQALYGHAQAMLQAAETGLNELAGRAAEPAGTLRLSLPAFFARGPLTTSLAAFSRCHPKV 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L   ++  D+  D  D AIR+ + +Q S+L  R+L  +     AAP  L    EP S
Sbjct: 123 ELELDYSDEKRDLIRDGIDLAIRIGE-LQDSALKSRRLFDMPRLLVAAPSLLDARGEPAS 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--------TVDRPIG-------EPRISCLQVNS 227
             EL                 D+ WL         T+    G       +PRI+    NS
Sbjct: 182 PAEL----------------ADWPWLGIRMRAKRKTLIDAAGRRHDFAIQPRITA---NS 222

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
             +  Q  + G G+A  P ++V++      L  ++ D    +  VY  +P
Sbjct: 223 VDAACQLAIAGCGLATPPAFLVENELAAGQLRVVLPDCQVEALGVYAVWP 272


>gi|50122575|ref|YP_051742.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613101|emb|CAG76552.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 302

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 125/284 (44%), Gaps = 8/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT+ G K    
Sbjct: 9   VFVTIIDRGSMIAAAETLDMSRAMVTRYLAEMEAWAGARLLHRTTRKLSLTDAGEKTLVR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+       ++E        SG LR++ +  L Q  L   +  FL  +P + I L ++
Sbjct: 69  CREMLALTADMRVEANTDDATLSGLLRLSCSQSLAQGALGIAITAFLRRHPRVAIDLQMN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +++  +  D A+R+   +   +LI R L        A+P YL     P  + +L  H
Sbjct: 129 NRSVNLVEERIDLALRITNELD-PNLIARPLANCESVLCASPSYLNEHGIPRQLTDLSIH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N +T+     K +  F   +  D     P    L  N  L ++   + G+GIAL P Y V
Sbjct: 188 NCLTY-TYFGKSLWHF---SRGDEKFTIPVSGNLSGNESLVLLSGALEGAGIALQPRYSV 243

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                +  LV ++ +       +Y  Y    +    L+   +F+
Sbjct: 244 TSYLASGQLVALLPEYRPQMMGIYGIYTSRRQMPTALRTLLDFL 287


>gi|307726977|ref|YP_003910190.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587502|gb|ADN60899.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 300

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 105/241 (43%), Gaps = 15/241 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  +A  G+ T AA +L  S  ++SR +  LE E G  L  R  R   LT  G + +
Sbjct: 9   LEVFVAIAEEGNLTGAARRLDRSLQAVSRSLQVLEREAGTLLVARTTRQCRLTTPGEQFY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   L   + EL E +   SG+LRI      G   +   L  FL  YP +   L 
Sbjct: 69  ARVKQVLADLAMARAELAEYATTVSGRLRICGPTLFGPRYIAPLLAAFLARYPQLTASLD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D +   AD  IR+ +    S+L+ R+L TI    +A+P YL+    PL   +L 
Sbjct: 129 LSEEYDDPATSGADVTIRIGE-TPDSNLVARRLGTIRRVTFASPAYLEARGRPLRPADLK 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV------NSYLSIMQYCVLGSGI 241
           +H+ +    L    +    W     R + E     +QV      NS  +I +  V G GI
Sbjct: 188 QHDCVVRSALPEASL----WRYRSKRGVEE----AVQVRGRFESNSTAAINEAVVSGLGI 239

Query: 242 A 242
            
Sbjct: 240 G 240


>gi|271501383|ref|YP_003334408.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344938|gb|ACZ77703.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 297

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 128/274 (46%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F  VAR  SFT AA +L +SQS++S  +  LE+ + I+L  R  R +  TE G
Sbjct: 5   NFNELQLFLAVARERSFTRAAAKLGISQSALSHAMKALESRLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE    +L + +   +G +RI+      ++L+   LK FL  Y +I 
Sbjct: 65  ERIITCLEPRLAELEQELEQLVQLNGIAAGNIRISAGEHAAKSLVWPKLKPFLREYSEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  IDI     D  +RL + +    +  R    + +    +P Y      P + 
Sbjct: 125 VELVVDNGFIDIVEGRFDAGVRLGESLDKDMVAVRIGPDLRLVVVGSPDYFARYGVPDTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I     +P     ++W    D +P+       L  N     +     G G++
Sbjct: 185 HDLQHHRCINM--RLPTMGGLYHWEFEKDGKPLQVKVDGQLTFNHLSERIDAAESGFGLS 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +P+  V+   ++  L+ ++ +  +P F  Y+ Y
Sbjct: 243 FVPEDTVQSQLESGTLIEVLHE-WSPLFPGYYLY 275


>gi|172063507|ref|YP_001811158.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996024|gb|ACB66942.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 290

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 136/290 (46%), Gaps = 21/290 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR  SFT AAEQL L+Q ++SRQI  LE   G  LF RHA+GLTLT +G +L 
Sbjct: 10  LQIFSTVARHRSFTRAAEQLCLTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V  E + ++E   ++L       +  L++ T +      +   +  F   +PD+ +Q+ 
Sbjct: 70  PVVDESFSRIEDISMKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D S +  D A+ +      + +    L    +    AP  L+      ++ +L
Sbjct: 125 TAWQHVVDFSTEPFDAAV-VYGTSPGTGVCALPLFDERLTPVCAPE-LRQAAPLDAVGDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---MQYCVLGSGIAL 243
            +H L+          +  +W A +D   GE  +   +  ++ ++         G G+A+
Sbjct: 183 ARHTLLH------PTRDHRDWRAWLDY-AGERAVDAERGPTFDTLDLATNAATQGFGVAI 235

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               +V D+ +   L R  + V+      +F YPE L +  K++AF ++I
Sbjct: 236 GDVTLVDDDVSARRLERPFDIVLETGARYFFVYPENLASQQKIRAFSDWI 285


>gi|238796564|ref|ZP_04640071.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           mollaretii ATCC 43969]
 gi|238719542|gb|EEQ11351.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           mollaretii ATCC 43969]
          Length = 298

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 12/286 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68
           VF  +   GS   AAE L +S++ ++R ++ +E   G++L +R  R L+LT  G + L R
Sbjct: 9   VFVAIVERGSMIAAAEALEMSRAMVTRYLAQMEQWAGVRLLHRTTRKLSLTHAGEATLER 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +  QES+ +  G LRI+ +  LGQ+ L   + ++L  +P + + L +
Sbjct: 69  CRRMLEFAQDMDAVAGQESN-ELRGLLRISCSQSLGQSALVIAVTDYLRQHPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L   H    A+P YL     P    +L  
Sbjct: 128 NNRAVNLVEERIDLALRITNEL-DPNLIARPLAICHSVVCASPAYLAAKGTPKGPPDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           HN +T+     K +  F+         +G      L  N  + ++   + G+GIAL P Y
Sbjct: 187 HNCLTY-SYFGKSLWHFDQQGVKSSVAVG----GNLSANESVVLLSGALEGAGIALQPSY 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                     L++++ D    +  +Y  Y    +    L+   +F+
Sbjct: 242 SAAPYIARGELIKLLPDYQPQAMGIYGIYTSRRQMPATLRTMLDFL 287


>gi|319780135|ref|YP_004139611.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166023|gb|ADV09561.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 302

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 129/288 (44%), Gaps = 13/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  VAR  +F  AA QL ++ S++S+ +  LE  +G  LF R  R + LTE G +
Sbjct: 13  EGIEAFLAVARHRNFRRAAAQLGVTPSAVSQAVRALEARMGAALFVRTTRSVGLTEPGQR 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + +L      +++   +P+G LR++    +   +L+  +  F   YP+I+++
Sbjct: 73  FLDRAGPAFEELVAAGEAVRDIGQRPTGLLRLSVPRAVVPLILEPMIASFCRAYPEIELE 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D++    D  IRL + I    +  R   +       +P YLK    P  + +
Sbjct: 133 IAASDEMVDLAAGGFDAGIRLGQFIAVDMVAVRLTPSFSFVVVGSPDYLKRHGRPERVDD 192

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H  +      G + P    D N   T++  +  P I+    + Y +++   + G G+
Sbjct: 193 LRNHACLRLRRSNGAIAPWAFVDGNE--TIEAMLSGPLIA----HDYPTLLGAAMRGVGL 246

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A  P  I +       L  +++ +   +  V+  +P   +   KL+AF
Sbjct: 247 AQTPRPIAEAPIAEGKLEPVLDGIAATTPGVFLYHPGKRQVLPKLRAF 294


>gi|293610195|ref|ZP_06692496.1| transcriptional regulator [Acinetobacter sp. SH024]
 gi|292827427|gb|EFF85791.1| transcriptional regulator [Acinetobacter sp. SH024]
          Length = 298

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 137/300 (45%), Gaps = 22/300 (7%)

Query: 6   DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L+ F++   VA+  SF   A QL L +S+++  I  LET  G++LF+R  R ++LT+ 
Sbjct: 2   DRLQQFFIFTEVAKRQSFIEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPDI
Sbjct: 62  GQRILPECQNLLFDYEQLEQLIQAQKQHYRGTLKISMPSRIVHQVIIPELPDFYSRYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL   +   D+     DC +R+ + + +SSLI + +  + M   A+  YL+    P  
Sbjct: 122 HLQLHSSDDITDLIEKGIDCVVRVGQ-LDNSSLIAKFVGNLIMVNCASADYLEQYGIPEQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++L +H LI +   + +    F++      +D        S L VN+  + +     G 
Sbjct: 181 LEDLSQHKLINYAGAVGEKQGVFSYQDGAVMMD--------SALSVNNTEAYIAAASAGL 232

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  LP Y V+D      LV ++      S  +   YP       +L+ F  +    ARD
Sbjct: 233 GIIQLPYYDVQDKIEQGTLVEVLSAYTAQSLPLNILYPNRSYIPKRLEIFMEW----ARD 288


>gi|89073786|ref|ZP_01160300.1| transcriptional regulator [Photobacterium sp. SKA34]
 gi|89050561|gb|EAR56053.1| transcriptional regulator [Photobacterium sp. SKA34]
          Length = 304

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 11/243 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LTE G+
Sbjct: 4   FSDMTLFISIVKNQGMAAAGRELGLSPATVTARLQALEDRYGVKLLNRSTRHISLTESGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+   E+ H ++ T+  LQ  S +  G L+I+   D+G+  +   +  F   YPD+  
Sbjct: 64  LYHQACLEIIHSVKETENLLQTGSQEVRGTLKISAPRDIGKQYISPIISAFCERYPDVVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L LD+K  +++    D  IR  + +  S+LI RKL        A P YL N   P++ Q
Sbjct: 124 YLYLDDKLTNLAESGIDIVIRYGE-LADSNLISRKLAPSRRVLCATPEYLANKGTPVTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSG 240
           +L  H+ +    +I    E   W  T D    +  +  L    +      I Q+ + G+G
Sbjct: 183 DLADHHCLA---MIRSNEELKTWHFTDD---NQQTVITLVPKRFSDDGEVIRQWALDGAG 236

Query: 241 IAL 243
           IAL
Sbjct: 237 IAL 239


>gi|15803330|ref|NP_289363.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H7 EDL933]
 gi|15832922|ref|NP_311695.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H7 str. Sakai]
 gi|16130715|ref|NP_417288.1| DNA-binding transcriptional dual regulator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|26249213|ref|NP_755253.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           CFT073]
 gi|74313379|ref|YP_311798.1| DNA-binding transcriptional activator GcvA [Shigella sonnei Ss046]
 gi|89109594|ref|AP_003374.1| DNA-binding transcriptional dual regulator [Escherichia coli str.
           K-12 substr. W3110]
 gi|91212177|ref|YP_542163.1| DNA-binding transcriptional activator GcvA [Escherichia coli UTI89]
 gi|110642949|ref|YP_670679.1| DNA-binding transcriptional activator GcvA [Escherichia coli 536]
 gi|117625036|ref|YP_854024.1| DNA-binding transcriptional activator GcvA [Escherichia coli APEC
           O1]
 gi|157155797|ref|YP_001464132.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           E24377A]
 gi|157162262|ref|YP_001459580.1| DNA-binding transcriptional activator GcvA [Escherichia coli HS]
 gi|168751025|ref|ZP_02776047.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758193|ref|ZP_02783200.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4401]
 gi|168766781|ref|ZP_02791788.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4486]
 gi|168778802|ref|ZP_02803809.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4076]
 gi|168788072|ref|ZP_02813079.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC869]
 gi|168801672|ref|ZP_02826679.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC508]
 gi|170018946|ref|YP_001723900.1| DNA-binding transcriptional activator GcvA [Escherichia coli ATCC
           8739]
 gi|170082379|ref|YP_001731699.1| DNA-binding transcriptional dual regulator [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170681756|ref|YP_001744973.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           SMS-3-5]
 gi|187733581|ref|YP_001881453.1| DNA-binding transcriptional activator GcvA [Shigella boydii CDC
           3083-94]
 gi|188494481|ref|ZP_03001751.1| glycine cleavage system transcriptional activator [Escherichia coli
           53638]
 gi|193065117|ref|ZP_03046191.1| glycine cleavage system transcriptional activator [Escherichia coli
           E22]
 gi|195936412|ref|ZP_03081794.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H7 str. EC4024]
 gi|208812725|ref|ZP_03254054.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4045]
 gi|209400092|ref|YP_002272274.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4115]
 gi|209920259|ref|YP_002294343.1| DNA-binding transcriptional activator GcvA [Escherichia coli SE11]
 gi|215488125|ref|YP_002330556.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217327004|ref|ZP_03443087.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. TW14588]
 gi|218555359|ref|YP_002388272.1| DNA-binding transcriptional activator GcvA [Escherichia coli IAI1]
 gi|218559796|ref|YP_002392709.1| DNA-binding transcriptional activator GcvA [Escherichia coli S88]
 gi|218690931|ref|YP_002399143.1| DNA-binding transcriptional activator GcvA [Escherichia coli ED1a]
 gi|218696407|ref|YP_002404074.1| DNA-binding transcriptional activator GcvA [Escherichia coli 55989]
 gi|218701525|ref|YP_002409154.1| DNA-binding transcriptional activator GcvA [Escherichia coli IAI39]
 gi|218706304|ref|YP_002413823.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           UMN026]
 gi|227888350|ref|ZP_04006155.1| DNA-binding transcriptional activator GcvA [Escherichia coli 83972]
 gi|237706560|ref|ZP_04537041.1| glycine cleavage system transcriptional activator [Escherichia sp.
           3_2_53FAA]
 gi|238901946|ref|YP_002927742.1| DNA-binding transcriptional dual regulator [Escherichia coli
           BW2952]
 gi|253772335|ref|YP_003035166.1| GcvA family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037862|ref|ZP_04871920.1| glycine cleavage system transcriptional activator [Escherichia sp.
           1_1_43]
 gi|254162739|ref|YP_003045847.1| DNA-binding transcriptional activator GcvA [Escherichia coli B str.
           REL606]
 gi|254794749|ref|YP_003079586.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H7 str. TW14359]
 gi|256019403|ref|ZP_05433268.1| DNA-binding transcriptional activator GcvA [Shigella sp. D9]
 gi|256024688|ref|ZP_05438553.1| DNA-binding transcriptional activator GcvA [Escherichia sp.
           4_1_40B]
 gi|260845454|ref|YP_003223232.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O103:H2 str. 12009]
 gi|260856918|ref|YP_003230809.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O26:H11 str. 11368]
 gi|260869486|ref|YP_003235888.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O111:H- str. 11128]
 gi|261226109|ref|ZP_05940390.1| DNA-binding transcriptional dual regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256636|ref|ZP_05949169.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284137|ref|YP_003500955.1| Glycine cleavage system transcriptional activator [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406300|ref|ZP_06650226.1| glycine cleavage system transcriptional activator GcvA [Escherichia
           coli FVEC1412]
 gi|293412156|ref|ZP_06654879.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293449134|ref|ZP_06663555.1| LysR family transcriptional regulator [Escherichia coli B088]
 gi|298382036|ref|ZP_06991633.1| glycine cleavage system transcriptional activator [Escherichia coli
           FVEC1302]
 gi|300815771|ref|ZP_07095995.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300820599|ref|ZP_07100750.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300898128|ref|ZP_07116494.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300920334|ref|ZP_07136772.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300923212|ref|ZP_07139267.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300931274|ref|ZP_07146614.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300936272|ref|ZP_07151205.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300950544|ref|ZP_07164451.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300976444|ref|ZP_07173429.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|301027521|ref|ZP_07190858.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|301304580|ref|ZP_07210690.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|301325758|ref|ZP_07219210.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|301645222|ref|ZP_07245175.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|306812311|ref|ZP_07446509.1| DNA-binding transcriptional activator GcvA [Escherichia coli NC101]
 gi|307139495|ref|ZP_07498851.1| DNA-binding transcriptional activator GcvA [Escherichia coli H736]
 gi|307312763|ref|ZP_07592393.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|309795279|ref|ZP_07689698.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|312964920|ref|ZP_07779160.1| glycine cleavage system transcriptional activator [Escherichia coli
           2362-75]
 gi|312972972|ref|ZP_07787145.1| glycine cleavage system transcriptional activator [Escherichia coli
           1827-70]
 gi|331643495|ref|ZP_08344626.1| glycine cleavage system transcriptional activator [Escherichia coli
           H736]
 gi|331648537|ref|ZP_08349625.1| glycine cleavage system transcriptional activator [Escherichia coli
           M605]
 gi|331654293|ref|ZP_08355293.1| glycine cleavage system transcriptional activator [Escherichia coli
           M718]
 gi|331658923|ref|ZP_08359865.1| glycine cleavage system transcriptional activator [Escherichia coli
           TA206]
 gi|331664370|ref|ZP_08365276.1| glycine cleavage system transcriptional activator [Escherichia coli
           TA143]
 gi|331674299|ref|ZP_08375059.1| glycine cleavage system transcriptional activator [Escherichia coli
           TA280]
 gi|331678789|ref|ZP_08379463.1| glycine cleavage system transcriptional activator [Escherichia coli
           H591]
 gi|331684431|ref|ZP_08385023.1| glycine cleavage system transcriptional activator [Escherichia coli
           H299]
 gi|332280521|ref|ZP_08392934.1| glycine cleavage system transcriptional activator [Shigella sp. D9]
 gi|71159365|sp|P0A9F8|GCVA_ECO57 RecName: Full=Glycine cleavage system transcriptional activator;
           AltName: Full=Gcv operon activator
 gi|71159366|sp|P0A9F7|GCVA_ECOL6 RecName: Full=Glycine cleavage system transcriptional activator;
           AltName: Full=Gcv operon activator
 gi|71159367|sp|P0A9F6|GCVA_ECOLI RecName: Full=Glycine cleavage system transcriptional activator;
           AltName: Full=Gcv operon activator
 gi|12517287|gb|AAG57922.1|AE005508_13 positive regulator of gcv operon [Escherichia coli O157:H7 str.
           EDL933]
 gi|26109620|gb|AAN81823.1|AE016765_225 Glycine cleavage system transcriptional activator [Escherichia coli
           CFT073]
 gi|312766|emb|CAA51813.1| glycine cleavage activator protein [Escherichia coli]
 gi|523331|gb|AAC13742.1| GcvA [Escherichia coli]
 gi|882703|gb|AAB40458.1| CG Site No. 28676 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789173|gb|AAC75850.1| DNA-binding transcriptional dual regulator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|13363140|dbj|BAB37091.1| positive regulator of gcv operon [Escherichia coli O157:H7 str.
           Sakai]
 gi|73856856|gb|AAZ89563.1| positive regulator of gcv operon [Shigella sonnei Ss046]
 gi|85675627|dbj|BAE76880.1| DNA-binding transcriptional dual regulator [Escherichia coli str.
           K12 substr. W3110]
 gi|91073751|gb|ABE08632.1| positive regulator of gcv operon [Escherichia coli UTI89]
 gi|110344541|gb|ABG70778.1| LysR family regulator of gcv operon [Escherichia coli 536]
 gi|115514160|gb|ABJ02235.1| positive regulator of gcv operon [Escherichia coli APEC O1]
 gi|157067942|gb|ABV07197.1| glycine cleavage system transcriptional activator [Escherichia coli
           HS]
 gi|157077827|gb|ABV17535.1| glycine cleavage system transcriptional activator [Escherichia coli
           E24377A]
 gi|169753874|gb|ACA76573.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|169890214|gb|ACB03921.1| DNA-binding transcriptional dual regulator [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170519474|gb|ACB17652.1| glycine cleavage system transcriptional activator [Escherichia coli
           SMS-3-5]
 gi|187430573|gb|ACD09847.1| glycine cleavage system transcriptional activator [Shigella boydii
           CDC 3083-94]
 gi|188014879|gb|EDU53001.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4113]
 gi|188489680|gb|EDU64783.1| glycine cleavage system transcriptional activator [Escherichia coli
           53638]
 gi|189003513|gb|EDU72499.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354926|gb|EDU73345.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363687|gb|EDU82106.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4486]
 gi|189372093|gb|EDU90509.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC869]
 gi|189376194|gb|EDU94610.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC508]
 gi|192927248|gb|EDV81868.1| glycine cleavage system transcriptional activator [Escherichia coli
           E22]
 gi|208734002|gb|EDZ82689.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4045]
 gi|209161492|gb|ACI38925.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4115]
 gi|209761208|gb|ACI78916.1| positive regulator of gcv operon [Escherichia coli]
 gi|209761210|gb|ACI78917.1| positive regulator of gcv operon [Escherichia coli]
 gi|209761212|gb|ACI78918.1| positive regulator of gcv operon [Escherichia coli]
 gi|209761214|gb|ACI78919.1| positive regulator of gcv operon [Escherichia coli]
 gi|209761216|gb|ACI78920.1| positive regulator of gcv operon [Escherichia coli]
 gi|209913518|dbj|BAG78592.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|215266197|emb|CAS10623.1| DNA-binding transcriptional dual regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217319371|gb|EEC27796.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. TW14588]
 gi|218353139|emb|CAU98987.1| DNA-binding transcriptional dual regulator [Escherichia coli 55989]
 gi|218362127|emb|CAQ99736.1| DNA-binding transcriptional dual regulator [Escherichia coli IAI1]
 gi|218366565|emb|CAR04318.1| DNA-binding transcriptional dual regulator [Escherichia coli S88]
 gi|218371511|emb|CAR19349.1| DNA-binding transcriptional dual regulator [Escherichia coli IAI39]
 gi|218428495|emb|CAR09421.2| DNA-binding transcriptional dual regulator [Escherichia coli ED1a]
 gi|218433401|emb|CAR14303.1| DNA-binding transcriptional dual regulator [Escherichia coli
           UMN026]
 gi|222034499|emb|CAP77241.1| glycine cleavage system transcriptional activator [Escherichia coli
           LF82]
 gi|226839486|gb|EEH71507.1| glycine cleavage system transcriptional activator [Escherichia sp.
           1_1_43]
 gi|226899600|gb|EEH85859.1| glycine cleavage system transcriptional activator [Escherichia sp.
           3_2_53FAA]
 gi|227834619|gb|EEJ45085.1| DNA-binding transcriptional activator GcvA [Escherichia coli 83972]
 gi|238860919|gb|ACR62917.1| DNA-binding transcriptional dual regulator [Escherichia coli
           BW2952]
 gi|242378360|emb|CAQ33137.1| GcvA transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253323379|gb|ACT27981.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974640|gb|ACT40311.1| DNA-binding transcriptional dual regulator [Escherichia coli B str.
           REL606]
 gi|253978805|gb|ACT44475.1| DNA-binding transcriptional dual regulator [Escherichia coli
           BL21(DE3)]
 gi|254594149|gb|ACT73510.1| DNA-binding transcriptional dual regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|257755567|dbj|BAI27069.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O26:H11 str. 11368]
 gi|257760601|dbj|BAI32098.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O103:H2 str. 12009]
 gi|257765842|dbj|BAI37337.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O111:H- str. 11128]
 gi|260448141|gb|ACX38563.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|281179809|dbj|BAI56139.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|284922747|emb|CBG35835.1| glycine cleavage system transcriptional activator [Escherichia coli
           042]
 gi|290764010|gb|ADD57971.1| Glycine cleavage system transcriptional activator [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322224|gb|EFE61653.1| LysR family transcriptional regulator [Escherichia coli B088]
 gi|291426306|gb|EFE99338.1| glycine cleavage system transcriptional activator GcvA [Escherichia
           coli FVEC1412]
 gi|291468927|gb|EFF11418.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294492655|gb|ADE91411.1| glycine cleavage system transcriptional activator [Escherichia coli
           IHE3034]
 gi|298277176|gb|EFI18692.1| glycine cleavage system transcriptional activator [Escherichia coli
           FVEC1302]
 gi|300308525|gb|EFJ63045.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|300358186|gb|EFJ74056.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300395029|gb|EFJ78567.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|300412659|gb|EFJ95969.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300420521|gb|EFK03832.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300450112|gb|EFK13732.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300458597|gb|EFK22090.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300460928|gb|EFK24421.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300526863|gb|EFK47932.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300531700|gb|EFK52762.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300840184|gb|EFK67944.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|300847457|gb|EFK75217.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|301076492|gb|EFK91298.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|305854349|gb|EFM54787.1| DNA-binding transcriptional activator GcvA [Escherichia coli NC101]
 gi|306907198|gb|EFN37704.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|307554780|gb|ADN47555.1| positive regulator of gcv operon [Escherichia coli ABU 83972]
 gi|307625622|gb|ADN69926.1| DNA-binding transcriptional activator GcvA [Escherichia coli UM146]
 gi|308121250|gb|EFO58512.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|309703166|emb|CBJ02500.1| glycine cleavage system transcriptional activator [Escherichia coli
           ETEC H10407]
 gi|310332914|gb|EFQ00128.1| glycine cleavage system transcriptional activator [Escherichia coli
           1827-70]
 gi|312290476|gb|EFR18356.1| glycine cleavage system transcriptional activator [Escherichia coli
           2362-75]
 gi|312947336|gb|ADR28163.1| DNA-binding transcriptional activator GcvA [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315062089|gb|ADT76416.1| DNA-binding transcriptional dual regulator [Escherichia coli W]
 gi|315137415|dbj|BAJ44574.1| glycine cleavage system transcriptional activator [Escherichia coli
           DH1]
 gi|315256671|gb|EFU36639.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|315289337|gb|EFU48732.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|315293760|gb|EFU53112.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
 gi|315298834|gb|EFU58088.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
 gi|315615196|gb|EFU95833.1| glycine cleavage system transcriptional activator [Escherichia coli
           3431]
 gi|320172920|gb|EFW48150.1| Glycine cleavage system transcriptional activator GcvA [Shigella
           dysenteriae CDC 74-1112]
 gi|320182424|gb|EFW57321.1| Glycine cleavage system transcriptional activator GcvA [Shigella
           boydii ATCC 9905]
 gi|320185278|gb|EFW60053.1| Glycine cleavage system transcriptional activator GcvA [Shigella
           flexneri CDC 796-83]
 gi|320189144|gb|EFW63803.1| Glycine cleavage system transcriptional activator GcvA [Escherichia
           coli O157:H7 str. EC1212]
 gi|320194950|gb|EFW69579.1| Glycine cleavage system transcriptional activator GcvA [Escherichia
           coli WV_060327]
 gi|320202455|gb|EFW77025.1| Glycine cleavage system transcriptional activator GcvA [Escherichia
           coli EC4100B]
 gi|320640458|gb|EFX09997.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H7 str. G5101]
 gi|320645704|gb|EFX14689.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H- str. 493-89]
 gi|320651004|gb|EFX19444.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H- str. H 2687]
 gi|320656500|gb|EFX24396.1| DNA-binding transcriptional activator GcvA [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662396|gb|EFX29793.1| DNA-binding transcriptional activator GcvA [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667094|gb|EFX34057.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154855|gb|EFZ41048.1| glycine cleavage system transcriptional activator [Escherichia coli
           EPECa14]
 gi|323167852|gb|EFZ53543.1| glycine cleavage system transcriptional activator [Shigella sonnei
           53G]
 gi|323172887|gb|EFZ58518.1| glycine cleavage system transcriptional activator [Escherichia coli
           LT-68]
 gi|323180241|gb|EFZ65793.1| glycine cleavage system transcriptional activator [Escherichia coli
           1180]
 gi|323183350|gb|EFZ68747.1| glycine cleavage system transcriptional activator [Escherichia coli
           1357]
 gi|323188773|gb|EFZ74058.1| glycine cleavage system transcriptional activator [Escherichia coli
           RN587/1]
 gi|323377328|gb|ADX49596.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323935830|gb|EGB32133.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1520]
 gi|323941510|gb|EGB37692.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|323946464|gb|EGB42490.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|323950975|gb|EGB46851.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323957179|gb|EGB52903.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
 gi|323960670|gb|EGB56294.1| LysR substrate binding domain-containing protein [Escherichia coli
           H489]
 gi|324015373|gb|EGB84592.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
 gi|324016335|gb|EGB85554.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
 gi|324119850|gb|EGC13729.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
 gi|326339117|gb|EGD62932.1| Glycine cleavage system transcriptional activator GcvA [Escherichia
           coli O157:H7 str. 1044]
 gi|326343001|gb|EGD66769.1| Glycine cleavage system transcriptional activator GcvA [Escherichia
           coli O157:H7 str. 1125]
 gi|330908838|gb|EGH37352.1| glycine cleavage system transcriptional activator GcvA [Escherichia
           coli AA86]
 gi|331036966|gb|EGI09190.1| glycine cleavage system transcriptional activator [Escherichia coli
           H736]
 gi|331042284|gb|EGI14426.1| glycine cleavage system transcriptional activator [Escherichia coli
           M605]
 gi|331047675|gb|EGI19752.1| glycine cleavage system transcriptional activator [Escherichia coli
           M718]
 gi|331053505|gb|EGI25534.1| glycine cleavage system transcriptional activator [Escherichia coli
           TA206]
 gi|331058301|gb|EGI30282.1| glycine cleavage system transcriptional activator [Escherichia coli
           TA143]
 gi|331068393|gb|EGI39788.1| glycine cleavage system transcriptional activator [Escherichia coli
           TA280]
 gi|331073619|gb|EGI44940.1| glycine cleavage system transcriptional activator [Escherichia coli
           H591]
 gi|331078046|gb|EGI49252.1| glycine cleavage system transcriptional activator [Escherichia coli
           H299]
 gi|332087525|gb|EGI92653.1| glycine cleavage system transcriptional activator [Shigella boydii
           5216-82]
 gi|332102873|gb|EGJ06219.1| glycine cleavage system transcriptional activator [Shigella sp. D9]
 gi|332344701|gb|AEE58035.1| glycine cleavage system transcriptional activator protein
           [Escherichia coli UMNK88]
 gi|332999565|gb|EGK19150.1| glycine cleavage system transcriptional activator [Shigella
           flexneri VA-6]
 gi|333000949|gb|EGK20519.1| glycine cleavage system transcriptional activator [Shigella
           flexneri K-272]
 gi|333015549|gb|EGK34888.1| glycine cleavage system transcriptional activator [Shigella
           flexneri K-227]
          Length = 305

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|270261620|ref|ZP_06189893.1| LysR family transcriptional regulator [Serratia odorifera 4Rx13]
 gi|270045104|gb|EFA18195.1| LysR family transcriptional regulator [Serratia odorifera 4Rx13]
          Length = 303

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 93/184 (50%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +V   GS   AA +L ++ S++S+ +  LE  +G+ L +R  R L LTE G+  +  
Sbjct: 3   VFAIVVAEGSLAGAARRLGMTPSAVSQHMRSLEKALGVPLLHRSTRRLALTEAGAAFYPG 62

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  + +  +  L E      G+LRIATT+ +G   L   L   L  +P + ++++ D
Sbjct: 63  CEAMLSQAQQAEQRLAELRDTLVGELRIATTVGIGGRPLAEALAPLLQAHPKLTLRVLAD 122

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D A+R+ + +  +S+I   L    M   AAP YL     P + Q+L  H
Sbjct: 123 DRIVDMIEQRIDIALRVNRQLADASMIAHPLAEWPMVLCAAPRYLSQHGVPETPQDLVAH 182

Query: 190 NLIT 193
             I+
Sbjct: 183 RWIS 186


>gi|237799825|ref|ZP_04588286.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806370|ref|ZP_04593074.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022680|gb|EGI02737.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027483|gb|EGI07538.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 315

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILASVEEAEAEASDAHARPAGQLKMHSMPGVGQHYVIDAIARYRRNHPDVAFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y++         +L
Sbjct: 126 TMTHRVPDLLEEGFDVSIVLASELADSGFVSQRLGITYSIVCASPEYVRTFGMAHKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+        WL   D P G+  +    S L VNS  ++      G GI 
Sbjct: 186 LNHACLR---LVSPVFPLEKWL--FDGPDGQEMVTINSSPLLVNSADAMKTAISSGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y   D   N  LVR++ D  +    +Y  YP            R ++  K R W
Sbjct: 241 ILPIYSAIDGLRNGTLVRVLSDYRSQELNLYAIYPS-----------RQYLDAKIRTW 287


>gi|323971586|gb|EGB66817.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
          Length = 312

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|312173900|emb|CBX82154.1| HTH-type transcriptional regulator ptxR [Erwinia amylovora ATCC
           BAA-2158]
          Length = 301

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  + S+T AA+ L L++SS+S++IS LE  +G KL  R  R + +TE G   +  
Sbjct: 12  IFAKVVETLSYTEAAKALGLAKSSVSKEISALEVRLGAKLLQRTTRRIQVTEVGMTYYHY 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              + H++++    +++   +P G LR+   +  G   +   L  F+     + + L L 
Sbjct: 72  CYRILHEVKSADRFIRQFHEEPGGSLRVVAPVTFGCQCIVPALNRFIASNIHVSVDLDLT 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +++  D  D AI + + +       R L+ I    YAAP YL N     S  +L +H
Sbjct: 132 DRPLNVEDDRIDIAIAITRDLPDHRH-YRPLMDIAWGLYAAPDYLLNRTPVTSPDDLQRH 190

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-------SCLQVNSYLSIMQYCVLGSGIA 242
             I F               T+  P  + ++       S  + N+ ++++   V  +GIA
Sbjct: 191 EFILFR----------GPAHTISLPFRKEKLKKDIEVRSRFRANNSIALLNSAVAETGIA 240

Query: 243 LLPDYIVK---DNPNLVRIMED 261
            LP YI     ++  LVR++ +
Sbjct: 241 YLPSYIAGEAVESGKLVRLLPE 262


>gi|149908411|ref|ZP_01897074.1| transcriptional regulator [Moritella sp. PE36]
 gi|149808574|gb|EDM68509.1| transcriptional regulator [Moritella sp. PE36]
          Length = 309

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 136/296 (45%), Gaps = 16/296 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +A+ GSFT AAE L  S++ +SRQ++ LE ++G++L  R  R   LT  G +  
Sbjct: 10  IRAFVTIAQQGSFTKAAEVLQSSRAHVSRQLAQLEQQLGVQLIVRTTRAQRLTPVGEQFF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
           +        +    I  ++ + +  G + I      +G+++L   + EF L +PDI+++L
Sbjct: 70  QQCLTSLQTINQAVIAAKDDTEQLQGSICINCVGGVIGEDILANIISEFNLQHPDIEVEL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D  +R+ + ++ S L+ RKL  I +   A+P YL         ++L
Sbjct: 130 DFSSPRVDLIAEAFDLVVRMGE-LEDSGLVARKLTDIKVQVLASPDYLAKHAAITHPKDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
           ++HN +T    I +       +   + PI +  I+        S  +++     G+GI  
Sbjct: 189 EQHNCLTGS--IKRWRFHQKSVQHNNAPIHDIEINVKGNFSCKSGRALINAAKHGNGIVR 246

Query: 244 LPDYIVKDNPNLVRIMEDVI---------TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+   ++  N   +   +I         +P   ++  Y        +LK   +FI
Sbjct: 247 LPELYCENEINANTLAPALISEPDEEQWHSPDVPLFLLYHRNRYQPARLKVLIDFI 302


>gi|59713780|ref|YP_206555.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59482028|gb|AAW87667.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 311

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 137/293 (46%), Gaps = 17/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  VA   +FT AAE+L +S+S +S+Q+  LET +  +L  R+ R +++TE GS+ 
Sbjct: 11  EMVIFATVANELNFTRAAEKLGISKSHVSKQVKALETRLDCQLVQRNNRSVSITELGSQY 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++          L     + SG  ++      G + +   L EF   +P+I++++
Sbjct: 71  AEYCQKLIDIAYEADALLDAHHGRISGVFKVGIAQSFGNSHIIHALAEFQAQFPEIELEV 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +    +  D  DC I +   +    ++ RK+        A+P Y++    P    EL
Sbjct: 131 SLFDHKPKLLEDGLDCWIAIHDDL-PEGMVARKIADCRFVVAASPDYIEQHGCPTRPAEL 189

Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241
            KH  IT+          FN W  T D   G  ++    S  ++++  +I+     G+GI
Sbjct: 190 VKHKCITY----QSNERRFNDWEFTRD---GVHQVVNVQSNFKIDNASAILDATKAGAGI 242

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           A L  Y+++   DN +LVR++++        +Y  YP       K++ F +F+
Sbjct: 243 AYLASYLLENEFDNGSLVRLLKEWQADMKLPIYAVYPRRQHLPPKVRTFIDFL 295


>gi|167035575|ref|YP_001670806.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862063|gb|ABZ00471.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 315

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA+ GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRESHPDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+  D+  +  D +I L   +  S  + ++L   +    A+P Y+          +L
Sbjct: 126 TMANRVPDLLDEGYDVSIVLATELPDSGFVSQRLGITYSIVCASPGYIARHGTAHKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
            KH  +    ++   +    WL   D P G+  +    S   VN+  ++      G G+ 
Sbjct: 186 LKHACLR---MVSPVIPLEKWL--FDGPEGQEMVNITSSPFMVNTADAMKTAIRSGMGVG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y   D   + +LVR++ +       +Y  YP       K+K +  ++
Sbjct: 241 VLPIYSAIDGLRDGSLVRVLPEYRLQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|304320565|ref|YP_003854208.1| LysR family transcriptional regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303299467|gb|ADM09066.1| transcriptional regulator, LysR family protein [Parvularcula
           bermudensis HTCC2503]
          Length = 296

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 137/297 (46%), Gaps = 18/297 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AAE+L+++  ++S+Q+  LE  VG+ LF+R A+GL LTE G  
Sbjct: 8   NSLRAFEAAARHLSFTKAAEELNVTPGAVSQQVKLLEETVGVSLFHRGAKGLVLTEGGIA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 + + +L+     + +   + SG+L ++         L   L  F   +PDI + 
Sbjct: 68  ALPSLRDGFDRLDAGVRLMGQQ--RGSGRLAVSVAPSFASKWLVPRLDRFQERHPDIDVY 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQ 184
           +  D   ID SMD  D AIR  +       +QR L+   +    AP  L     PL  I 
Sbjct: 126 VHADMDLIDFSMDDVDVAIRYGQGTYPDLDVQR-LMNEKIVPVCAPKLL-TAEPPLKKIG 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +L  H L+       +      WL    A VD   G PR      N    +++  V G G
Sbjct: 184 DLAHHTLLHDNGNDHEIATWPMWLKAAGARVDGTRG-PRF-----NQSSLVIEAAVAGRG 237

Query: 241 IALLPDYIVKDNPNLVRIM--EDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +AL    + + +    R++   D+ +P+ F  +  +P A     ++KAF+++I  +A
Sbjct: 238 VALAKYALAEADLEAARLVIPFDLTSPTDFAYWLVHPHAKAALPEVKAFKSWIVEEA 294


>gi|237800979|ref|ZP_04589440.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806485|ref|ZP_04593189.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023835|gb|EGI03892.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027598|gb|EGI07653.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 294

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 124/285 (43%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 8   RVFIAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L Q +L   +  +L  Y    +  ++
Sbjct: 68  RCQQLVEMADAVPLAADTQVDEPRGMLRIACSQSLAQAVLATAVTAYLQRYSGTSVDFLI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L   +    A+P YL     P   QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGQCYSIVCASPAYLALRGTPSRPQELAA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K + +F    +   P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 187 HNCLTY-SYFGKSLWEFTHGKS---PLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  LV +M      +  ++  Y      +  L+   +F+
Sbjct: 243 AAPLIASGKLVALMPGYQPRALGIHAIYTSRHHQSATLRTMLDFL 287


>gi|332184418|gb|AEE26672.1| Transcriptional regulator [Francisella cf. novicida 3523]
          Length = 297

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 2/192 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLTEQ 62
           ++D + +F  +   G+FT  A+QL++SQS++SR+I  LE  +  KL  R++RG + +T +
Sbjct: 2   NFDDIFLFVKLVNIGTFTELAKQLNVSQSTVSRRIQSLEESINTKLIKRNSRGVIEITTE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+   S +  +   T  +   SS +  G LRI        NL+   L  F   YP++
Sbjct: 62  GQSLYNNFSYIEKQAVMTLQKWINSSKQVKGILRIGVPKLFFDNLVAPKLDTFYTRYPNV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+        +D+  D  D AI  +KP  ++  I + L+      YA+  Y++    P +
Sbjct: 122 QLVFSYTAGIVDLVKDNIDIAITTKKPTTNNCTI-KTLLKSKNKLYASKKYIQEKGVPET 180

Query: 183 IQELDKHNLITF 194
           I+EL+ H+++ F
Sbjct: 181 IKELENHSIVGF 192


>gi|309779204|ref|ZP_07673967.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308922008|gb|EFP67642.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 301

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 119/251 (47%), Gaps = 26/251 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  VA   SFT AAE L + +  +S  I  LE +VG+ L +R  R + LTE G +
Sbjct: 5   DALLIFARVAEMTSFTRAAESLGIQKGRVSTVIRTLERDVGVALLHRTTRSVQLTEDGRE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++  + +  Q     +     G+LR+    +L ++++   L + +  +P++Q++
Sbjct: 65  FYARARDLLAEAQELQSMFLANGGPLRGRLRVDLPTELARSVVVPALPQLMAAHPELQLE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC IR   PI   ++I R L  + M   A+P YL+    P ++++
Sbjct: 125 LSSTDRRVDLVQEGFDCVIRF-GPITDETMIARPLGKLRMTNAASPAYLERYGVPHTLED 183

Query: 186 L--DKHNLITF---------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
           L    H ++ +         G   P   + + WL         P  S +QVN   S+  Y
Sbjct: 184 LLSQGHQMVHYTLTLGARHAGWQYPDG-DGYAWL---------PLPSAMQVN---SVQTY 230

Query: 235 CVLG-SGIALL 244
              G +GI L+
Sbjct: 231 HAAGLAGIGLI 241


>gi|156934432|ref|YP_001438347.1| hypothetical protein ESA_02263 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532686|gb|ABU77512.1| hypothetical protein ESA_02263 [Cronobacter sakazakii ATCC BAA-894]
          Length = 333

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 133/291 (45%), Gaps = 24/291 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +  SGS + AA+Q++ +Q+++SR++  LE  +G +L  R    + LT+ G + +
Sbjct: 27  MHTFVRIIESGSLSAAAQQMNTTQATVSRRLKSLEDLLGARLLLRTTHAMKLTDDGERCY 86

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V    +  + E++ +  +P G LR+      GQ+ L   L  FL  YP + +  +
Sbjct: 87  QHARSVLASWQALEDEIKNAEGEPVGVLRVRAPHAFGQDQLIAPLTAFLNRYPGLCVDWM 146

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K  D   D  DCA+ +  P    S+I  +L  +     A+P  L   R P  ++++D
Sbjct: 147 LNDKSPDFISDNIDCALHV-GPDIDPSVIAVELAEVPRIVVASPELL--ARHP-PVEDID 202

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---------PRISCLQVNSYLSIMQYCVLG 238
                +   L    +  F         IG          PR+S    +S  +I +  + G
Sbjct: 203 -----SLAALPWVALSTFYRREVTLHHIGSGERQAFTVLPRLSS---DSLYAIRRTILNG 254

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+ ++  + V+++     LV+++     P+  VY  YP A     +L+ F
Sbjct: 255 LGVGMISAWAVEEDLREGRLVQLLPQWQAPALPVYLLYPWARYYPARLRRF 305


>gi|71281856|ref|YP_269784.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147596|gb|AAZ28069.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 289

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 139/307 (45%), Gaps = 41/307 (13%)

Query: 6   DKLRVFYVVA---RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   + A   + GSF  AA++L LS S +S Q++ LE  VG  L YR  R L+LT +
Sbjct: 3   DELRAMAIFAETIKQGSFRAAAKELKLSPSVVSYQVTQLEKSVGTALIYRSTRKLSLTSE 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQG----NLKEFLLL 118
           G  L++      + ++  Q  L + +++   +LR   T+ L   L++      + +F  L
Sbjct: 63  GGVLYQY---ALNMIQAAQQGLNQVAIEKQ-ELRGTLTLTLPSALIKSEISKKISQFSKL 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P +  +L   +   D+     D A R    +  S+L  +++  I+     +  Y K   
Sbjct: 119 HPFLNFKLFYTDDRQDLIHQGIDLAFR-AGSMDDSNLKSKRVGEINRKLVCSYDYWKENI 177

Query: 179 EPLSIQELDKHNLITFGDLIP-----------KCMEDFNWLATVDRPIGEPRISCLQVNS 227
            P+S Q+L   N I   D++P           KC  DF               S + VN+
Sbjct: 178 PPISPQDLTTWNWIKL-DMLPNHRTLVNSAGEKCDIDFE--------------SNISVNN 222

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
             ++ Q C+ G+GIA  PDY+++   +N  LV ++ +    S  +Y  +P  +     +K
Sbjct: 223 VEAMTQLCINGAGIATPPDYLIEKEIENNALVELLPNWQVESIPLYAVWPSNVFQNSSVK 282

Query: 285 AFRNFIF 291
               F+ 
Sbjct: 283 RLLEFLI 289


>gi|107028458|ref|YP_625553.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686453|ref|YP_839700.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897622|gb|ABF80580.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652168|gb|ABK12807.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 300

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 134/266 (50%), Gaps = 12/266 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++  F  +A +GS T AA++LH   S +SR +  LE ++   L  R  R L +T
Sbjct: 1   MKTTLDEMLAFVTIADTGSLTGAADKLHQPTSVMSRILRRLEEKLDTTLIRRTTRRLEMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        E+   +E  + ++      P+G+LRI   +   Q+++   +  F   YP
Sbjct: 61  EEGKLFLDYAREIIASVEFAEEQIVSQREAPAGRLRINAAMPFMQHVIAPMMPGFRDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+ +L   ++ ID+     D AIR+ + ++ S+L  R+L +  +   A+P YL+    P
Sbjct: 121 AIEAELHTSDEIIDLLEQRTDVAIRIGE-LRDSTLHARRLGSSRLRILASPAYLEKAGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
            S+ +L  H L+ F  + P+ +   +W L T D   G  RI   LQ +S  +++   + G
Sbjct: 180 ASVADLANHTLLGF--VQPETLN--HWPLRTADD--GVYRIHPALQASSGETLLTLALNG 233

Query: 239 SGIALLPDYIV---KDNPNLVRIMED 261
           +G+  L DY+    + + +LV ++ D
Sbjct: 234 AGVVCLADYMTGTHRRDGSLVELLVD 259


>gi|311105674|ref|YP_003978527.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760363|gb|ADP15812.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           67 [Achromobacter xylosoxidans A8]
          Length = 303

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 131/295 (44%), Gaps = 19/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ AAE L + + +++  +  +E  +G +L  R  R + LT  G 
Sbjct: 4   FQEMQVFVRIAERRSFSKAAEDLQIPRPTVTNLVKRMEARLGARLLERTTRQVRLTHDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   LE       ++S  P G LR+     L +  +   L  FL  YPDI +
Sbjct: 64  AHYRRCVRLLADLEEADGAFLDTS--PKGLLRVNAQGTLARFFVMPGLPAFLQRYPDIVL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL  D++ +D+  +  DC +R    +Q SSL+ R++  +     A+P YL    EP  ++
Sbjct: 122 QLGEDDRLVDLVREGVDCVLRT-GALQDSSLVGRQIALMPQVTVASPAYLARFGEPRRLE 180

Query: 185 ELDKHNLITF-----GDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +L+ H  + +     G  +P   M D   +    R +    +S      Y       + G
Sbjct: 181 DLEGHCAVDYLSSATGRSLPLDFMVDGRNVQMRPRAV----VSVTGAELYTGA---ALAG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  +P Y V+       L  ++ D       V   YP+  + + +++ F  ++
Sbjct: 234 LGLVQVPRYRVERELAAGELKIVLPDAPPAPMPVSVLYPQNRQVSARVRVFTQWL 288


>gi|262377589|ref|ZP_06070810.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145]
 gi|262307476|gb|EEY88618.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145]
          Length = 320

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 130/289 (44%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T  G +L 
Sbjct: 29  MRIFCVAAESRNFKEAATQLGISPQVVTRAIKELEEQRGEILFYRSTRQIKITADGERLA 88

Query: 68  RVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   YPDI +  
Sbjct: 89  KQAHFAVGSIDALFVKDTKEKRDEMRGTVRLTVSSVLGRKLVVPALAEFATRYPDIVVDC 148

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +   D+  +  D  IR    +  +  + R+L  ++ ++   P  +     P  I +L
Sbjct: 149 VLTDSHSDVIDERIDIGIRF-GFLPDNRYVARELAKVNFYSVGTPELIDKVGMPKKIIDL 207

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           DK+ L    D   K    + W  T  R     +PR     + +     Q  + G G   +
Sbjct: 208 DKYPLTALFD--HKTGRYWPWTFTESRSFTPSKPRFITDDLEAEF---QAILAGVGFGHM 262

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V     +  L++I+ +  +P + +Y   P+      +++A  +++
Sbjct: 263 PGFLVLPWLRSGKLIQILHEETSPVWRLYLYRPQRGPTPLRIRALFDYL 311


>gi|197337242|ref|YP_002158154.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314494|gb|ACH63943.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 307

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 137/293 (46%), Gaps = 17/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  VA   +FT AAE+L +S+S +S+Q+  LET +  +L  R+ R +++TE GS+ 
Sbjct: 7   EMVIFATVANELNFTRAAEKLGISKSHVSKQVKALETRLDCQLVQRNNRSVSITELGSQY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++          L     + SG  ++      G + +   L EF   +P+I++++
Sbjct: 67  AEYCQKLIDIAYEADALLDAHHGRISGVFKVGIAQSFGNSHIIHALAEFQAQFPEIELEV 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +    +  D  DC I +   +    ++ RK+        A+P Y++    P    EL
Sbjct: 127 SLFDHKPKLLEDGLDCWIAIHDDL-PEGMVARKIADCRFVVAASPGYIEQHGCPTRPAEL 185

Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241
            KH  IT+          FN W  T D   G  ++    S  ++++  +I+     G+GI
Sbjct: 186 VKHKCITY----QSNERRFNDWEFTRD---GVHQVVNVQSNFKIDNASAILDATKAGAGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           A L  Y+++   DN +LVR++++        +Y  YP       K++ F +F+
Sbjct: 239 AYLASYLLENEFDNGSLVRLLKEWQADMKLPIYAVYPRRQHLPPKVRTFIDFL 291


>gi|190573119|ref|YP_001970964.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011041|emb|CAQ44650.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 299

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 5/199 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR GSFT AA QL +SQS++S  + GLE  +G++L  R  R ++ TE G++
Sbjct: 7   NDLQAFVHVAREGSFTKAAAQLGVSQSALSHAMRGLEQRLGVRLLTRTTRSVSTTEAGAR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L         ++E     L E   +P+G +RI  T    + +    L   L  YPD++++
Sbjct: 67  LLDTLGPRLAEIEDGLAALAEYRERPAGTIRINATGHAAEYIAWPRLAPLLQQYPDLKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D    DI  +  D  IRL + +    +       + M    AP Y +    P    E
Sbjct: 127 LAADYGLADIVAERYDIGIRLGERLARDMVAVPISPPLRMRVVGAPGYFRQHVVPRHPDE 186

Query: 186 LDKHNLITF-----GDLIP 199
           L  HN +T      G L+P
Sbjct: 187 LADHNCVTLRLPTHGGLMP 205


>gi|167624804|ref|YP_001675098.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354826|gb|ABZ77439.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 314

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 129/271 (47%), Gaps = 18/271 (6%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           VA  GSF+  AEQ ++ +S IS+QI+ LE E+G+ L  R  R L+LT  G ++      +
Sbjct: 13  VAELGSFSKVAEQRNVDRSVISKQINRLEHELGVHLLNRTTRSLSLTAVGHEMVSQAKSL 72

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              L  +    Q    +P G LRI ++   G+  +Q  +  F   YPD+ I+L L+++ I
Sbjct: 73  RTLLNDSHRLAQYYHSEPKGVLRITSSTLFGRQHVQQAVLVFQQQYPDVDIELRLEDRLI 132

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+  +  D   R+ KP + S+LI RK+    +   AAP ++K   E  ++++L+      
Sbjct: 133 DMVGEGFDIGFRIGKP-KDSNLITRKIARNRLLIVAAPEFIKKHGEIKTLEQLEALPAAV 191

Query: 194 FGDLIPKCMED-FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252
           +    P  + D F++L   +           +VN    I Q  V G+ +A++   ++ DN
Sbjct: 192 YA--APGLLIDKFSYLDANNETKQLQLNVVYKVNDVEMITQTAVAGNMLAVVAAQMI-DN 248

Query: 253 PNLVRIMEDVITPSF---------TVYFCYP 274
                I+E  + P           T Y  YP
Sbjct: 249 ----EILEQKLIPVMTQLHLNDLGTFYAVYP 275


>gi|158422321|ref|YP_001523613.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
 gi|158329210|dbj|BAF86695.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
          Length = 303

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 19/276 (6%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           S + AA +L L++S +S +++ LE  +G +L  R  R L LTE G+        +  + E
Sbjct: 18  SISEAARRLGLAKSVVSERLAELERLLGARLMQRSTRRLALTEAGTAFLTRGRRLLREAE 77

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
               E+ E     +G LR++  +  G   L   L  FL  +P I++ L LD++ +D+  D
Sbjct: 78  EAVAEIAEQKSLLAGPLRVSAPVSFGTLHLGRALHPFLAAHPGIELTLELDDRFVDVVTD 137

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D  IR    +  + L  R+L T      AAP YL+    P S+  L  H  I + +  
Sbjct: 138 GFDLVIR-HGQVHDTRLAARRLATSRRFLVAAPAYLEAHEAPASLDALSAHRAILYAN-- 194

Query: 199 PKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN-- 252
                + +W    + P G     PR   L+VN+ + +    V G G+ALLP ++  +   
Sbjct: 195 ----RETDW--RFETPSGAVAVRPR-PGLRVNNGVMMRGAAVAGLGLALLPTFLCHEELA 247

Query: 253 PNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAF 286
              ++++ DV  P+    ++  YP     + KL+A 
Sbjct: 248 AGTLKVV-DVGVPAEGAQLHAAYPLDRSASAKLRAL 282


>gi|325168897|ref|YP_004280687.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064620|gb|ADY68309.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 301

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 124/264 (46%), Gaps = 15/264 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA +GSF+ AA    L+Q ++SRQ+S LE     +LF+R    L+LT +G ++ 
Sbjct: 7   LRTFLRVAETGSFSAAALDRGLTQPAVSRQVSSLEEHYSTRLFHRSTNALSLTVEGEQMI 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  +V   +E             SGK+RI+    LG   +   L  FL   P + + ++
Sbjct: 67  SMAQKVIDAVEALDETASADGAIASGKVRISLPAALGL-YISDRLPAFLKDCPGLSVDVL 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +  D+  +  D  +RL + +  SSLI R++        AAP Y++    P  + E+ 
Sbjct: 126 FCEQSSDLVGEGIDLEVRLGE-VSDSSLICRRIGWTTAFLVAAPSYIQRRGMPNHLLEIP 184

Query: 188 KHNLITFGDLIPKCMEDFNWL----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H+ I +     +  E  +W     A ++R    PR   +  N+ ++  +    G G+A+
Sbjct: 185 DHDCICYN----RGGEGRSWSFLNGADIERIQVAPR---MVFNNAVAAHRAAQAGGGLAV 237

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF 267
           L   I  D+    R++E  + PSF
Sbjct: 238 LSHIIAGDDIAARRLVE--VMPSF 259


>gi|262372784|ref|ZP_06066063.1| LysR family transcriptional regulator [Acinetobacter junii SH205]
 gi|262312809|gb|EEY93894.1| LysR family transcriptional regulator [Acinetobacter junii SH205]
          Length = 320

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 130/289 (44%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T  G +L 
Sbjct: 29  MRIFCVAAESRNFKEAATQLGISPQVVTRAIKELEEQRGEILFYRSTRQIKITADGERLA 88

Query: 68  RVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   YPDI +  
Sbjct: 89  KQARLAVGSIDALLVKDTKEKRDEMRGTVRLTVSSVLGRKLVVPALAEFATRYPDIVVDC 148

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +   D+  +  D  IR    +  +  + R+L  ++ ++   P  +     P  I +L
Sbjct: 149 VLTDSHSDVIDERIDIGIRF-GFLPDNRYVARELAKVNFYSVGTPELIDKVGMPKKIIDL 207

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           DK+ L    D   K    + W  T  R     +PR     + +     Q  + G G   +
Sbjct: 208 DKYPLTALVD--HKTGRYWPWTFTESRSFTPSKPRFITDDLEAEF---QAILAGVGFGHM 262

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V     +  L++I+ +  +P + +Y   P+      +++A  +++
Sbjct: 263 PGFLVLPWLRSGKLIQILHEETSPVWRLYLYRPQLGPTPLRIRALFDYL 311


>gi|260774230|ref|ZP_05883145.1| transcriptional regulator LysR family [Vibrio metschnikovii CIP
           69.14]
 gi|260611191|gb|EEX36395.1| transcriptional regulator LysR family [Vibrio metschnikovii CIP
           69.14]
          Length = 299

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 122/275 (44%), Gaps = 12/275 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+ AAEQ +L+ S +S++I+ LE E+ ++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVIELGSFSKAAEQNNLTNSVVSKRIARLEEELAVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     L       SG ++++     G  LL   + EF   YP + + 
Sbjct: 64  LLISARNVKQATQEAMDALSGFGENVSGHIKMSVPTISGDLLLADAVAEFCNRYPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    +  SSLI R ++       A+P YL    + +  ++
Sbjct: 124 MSLDNRFVDLVEGGFDLVIRTGY-LDDSSLIARHILDSQWVVCASPAYLARHGQLIMPEQ 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  HN + +     +     +W      P G   +        ++  ++ +  + G GIA
Sbjct: 183 LVAHNCLQYA---YQTTGASDW--EFKSPTGNRIVKVSGSFSTDNATALRKAALGGHGIA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
            +P  +V  +     L+ +  D +     +Y  YP
Sbjct: 238 YVPRCLVYHDFREGTLIDLFPDQVGKKLGIYAVYP 272


>gi|24114092|ref|NP_708602.1| DNA-binding transcriptional activator GcvA [Shigella flexneri 2a
           str. 301]
 gi|30064153|ref|NP_838324.1| DNA-binding transcriptional activator GcvA [Shigella flexneri 2a
           str. 2457T]
 gi|82545106|ref|YP_409053.1| DNA-binding transcriptional activator GcvA [Shigella boydii Sb227]
 gi|110806748|ref|YP_690268.1| DNA-binding transcriptional activator GcvA [Shigella flexneri 5
           str. 8401]
 gi|24053222|gb|AAN44309.1| positive regulator of gcv operon [Shigella flexneri 2a str. 301]
 gi|30042409|gb|AAP18134.1| positive regulator of gcv operon [Shigella flexneri 2a str. 2457T]
 gi|81246517|gb|ABB67225.1| positive regulator of gcv operon [Shigella boydii Sb227]
 gi|110616296|gb|ABF04963.1| positive regulator of gcv operon [Shigella flexneri 5 str. 8401]
 gi|281602167|gb|ADA75151.1| Positive regulator of gcv operon [Shigella flexneri 2002017]
 gi|313647873|gb|EFS12319.1| glycine cleavage system transcriptional activator [Shigella
           flexneri 2a str. 2457T]
 gi|332753529|gb|EGJ83909.1| glycine cleavage system transcriptional activator [Shigella
           flexneri 4343-70]
 gi|332753666|gb|EGJ84045.1| glycine cleavage system transcriptional activator [Shigella
           flexneri K-671]
 gi|332754635|gb|EGJ85001.1| glycine cleavage system transcriptional activator [Shigella
           flexneri 2747-71]
 gi|332765765|gb|EGJ95978.1| gcvA transcriptional dual regulator [Shigella flexneri 2930-71]
 gi|333000061|gb|EGK19644.1| glycine cleavage system transcriptional activator [Shigella
           flexneri K-218]
 gi|333015119|gb|EGK34462.1| glycine cleavage system transcriptional activator [Shigella
           flexneri K-304]
          Length = 305

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTL-----LHDASRRDWQ---TYTRQLGFNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|307944428|ref|ZP_07659768.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307772177|gb|EFO31398.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 303

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 139/295 (47%), Gaps = 25/295 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V     F+ AA ++  S++ +S+ +  LE E+G +L  R  R ++LTE G   +
Sbjct: 7   MRCFIQVVDQKGFSAAAREMERSKALVSKYVGELEDELGARLLNRTTRQVSLTEVGHAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+  +L+  Q  ++ S     G+LRIA    +G +L+   + +FL   PD+ + L 
Sbjct: 67  KEALEILQRLDDLQASVRSSHQAVRGRLRIAAPRSMGDDLINQAVMDFLTQNPDVTVDLR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D A+R+ + +  SSLI R++         AP     C  P   + +D
Sbjct: 127 LEDRFVDLVEEGFDLAVRVTE-LADSSLIARRI---------APFRTVVCATP---EVVD 173

Query: 188 KHNLITF-GDLIPK-CMEDFNWLATVDRPIGE--PRISC-----LQVNSYLSIMQYCVLG 238
           KH + +   DL  + C+ D N+    +    +   R S      ++VNS  +     +  
Sbjct: 174 KHGVPSVPADLASRPCIIDTNYRYKQNWAFSQNGERTSVSVNGPIEVNSASAARSAALSH 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G    P   V +      L+ ++ED       +Y  YP     TGK++AF +F+
Sbjct: 234 LGYLRTPLIFVSNEVAAGKLLLLLEDYEQSMPGIYAVYPHRRHLTGKVRAFVDFL 288


>gi|241766101|ref|ZP_04764012.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241363854|gb|EER59174.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 328

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 121/258 (46%), Gaps = 11/258 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  VAR  +F  AA+++ L+QS++SRQI  LE EVG+ LF RH R + LT  G++L R
Sbjct: 22  RTFLAVARHLNFRAAADEMALTQSAVSRQIQALEDEVGVALFLRHTRAVELTSAGAQLQR 81

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  +++     +++++ + S  + I T        L   ++EF    PDI I++  
Sbjct: 82  AVVPALERMDAAVRLVRQTAGRKS--VAITTWASFASMWLIPRMEEFQRNNPDIDIRIDA 139

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +  +D+     D A+R   P  ++    R L    +   A+P  LK      +  +L +
Sbjct: 140 TDSAVDLDTSDVDLALRYSMPGAAARGALR-LFGEQLAVVASPWLLKANPPLRTPADLAQ 198

Query: 189 HNLITFGDL-IPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             LI  GD    + +E  +W    D    P  +P+   L  N    I+Q  + G G+AL 
Sbjct: 199 FTLIEAGDAHRTQNLEWLSWRRWFDIQGCPTLQPK-RWLYFNYASQIVQAALSGQGLALA 257

Query: 245 PDYIVKD---NPNLVRIM 259
              ++ D     +LV +M
Sbjct: 258 RMPLIADALATGDLVEVM 275


>gi|170765790|ref|ZP_02900601.1| glycine cleavage system transcriptional activator [Escherichia
           albertii TW07627]
 gi|170124936|gb|EDS93867.1| glycine cleavage system transcriptional activator [Escherichia
           albertii TW07627]
 gi|323966786|gb|EGB62217.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|323978581|gb|EGB73663.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
 gi|327251549|gb|EGE63235.1| glycine cleavage system transcriptional activator [Escherichia coli
           STEC_7v]
          Length = 305

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGDKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|37522429|ref|NP_925806.1| LysR family transcriptional regulator [Gloeobacter violaceus PCC
           7421]
 gi|35213430|dbj|BAC90801.1| LysR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 321

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 139/288 (48%), Gaps = 13/288 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V   GSF   AE+ +L+ S++SR IS LE  +G +L  R  R L+LTE G
Sbjct: 12  DTNDMAIFACVVNLGSFARTAEEHNLTPSAVSRVISRLELRLGARLLQRSTRKLSLTEAG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H    ++   +   + E+  ++++P G L+++  +  G+  +   +   +  +P++ 
Sbjct: 72  AIYHARVIQILADVAEAEAEVAAANLQPRGTLKLSVPVVFGRLHVAPLIGRLMRQFPELA 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D+  +  D A+R+   +  S L+ R+L T      A+P YL     P+  
Sbjct: 132 VELTLTDRFVDLIEEGIDLALRI-GALPDSRLMARRLCTNRRILVASPDYLARAGTPVRP 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
            +L +H+ + F  L      D+  +     P G   +S    L  N+  ++++  +   G
Sbjct: 191 ADLTRHSCLIFTAL--NRPRDWRLVG----PEGTTSVSVTGRLSANNGDALLEAALESLG 244

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           I     ++  +      LVR++ +       V+  YP A + + K+++
Sbjct: 245 ICPTATFVAAELLMRGELVRVLPEHEFEPTAVHAVYPSARQLSTKVRS 292


>gi|296156122|ref|ZP_06838961.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893628|gb|EFG73407.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 301

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 127/286 (44%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+ RVF  VA  GSF  AA  L L ++S+S  +  LE  VG++L +R  R + LT  G++
Sbjct: 5   DQYRVFIQVADMGSFIKAAHALELPRASVSAAVQQLEASVGVRLLHRTTRRVQLTADGAQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   ++      Q    + SG+L++     + + L+   L   L  +P +++ 
Sbjct: 65  LRERIRALLTDVDEIDQLFQVRQRQVSGQLKVDMPSRIARRLVVPALPGLLRNHPALRLA 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DCA+R+   +  S+L+   L  I M   A+P YL+    P    +
Sbjct: 125 LNSTDRAVDLVQEGVDCAVRV-GTLYDSNLVAHSLGNIAMINCASPGYLREHGAPERPDD 183

Query: 186 -LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            LD H  + +    P    +  W      R       S + VN+  + +  C  G G+  
Sbjct: 184 LLDGHLCVGYAS--PTTGRELPWDYLAAGREAQISVASRVIVNNAENYISCCCEGIGLIQ 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +P + V+       LV +M +       V   YP   + + +L AF
Sbjct: 242 IPRFDVQHLLSAGTLVEVMPEFRAAPMAVSALYPHRRQRSRRLVAF 287


>gi|296105834|ref|YP_003617534.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy]
 gi|295647735|gb|ADG23582.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy]
          Length = 287

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  V     F  AA +  +S +++SRQI+ LE E+  +L  R  R L+LT+ G+
Sbjct: 4   FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   +   +L   +I +  S  +  G L + ++       L   L EF+ L P +QI
Sbjct: 64  RYYQQCKKTLLELNEAEIAIANSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123

Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  +  D++ +  D    + +  P     L+++++ T      A+P YL     P +
Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGP---PELVRKRVSTTRYVLCASPGYLAKNGIPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL KH  IT     P  +  F      ++   EP    L +N   ++ +  +LG GI 
Sbjct: 181 PSELGKHRYITHSMRNPDNLVTFK---DNEQIYVEP---VLWLNDSRALCECALLGMGII 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L +YIV +   +  L+ ++ +    S +VY  Y  +     K++ F +F
Sbjct: 235 KLHEYIVAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284


>gi|241666768|ref|YP_002984852.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862225|gb|ACS59890.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 310

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 12/297 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF      GS   AA +L  S ++ISR +  LE  VG++L +R  R L L+E G +
Sbjct: 5   DAMKVFVTAVEEGSLAGAARRLKRSPTAISRALGLLEQHVGVELLHRTTRSLKLSEAGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V   LE   +        P G L I+    LG+ +L+  L  FLL   ++ ++
Sbjct: 65  YVEACRRVLVDLEEADMIAGSERSSPRGTLTISAPPILGEEVLRPILDSFLLENANVSVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L++ ++ +++  +  D A+R+     S+ +  R    +     AAP YL +        +
Sbjct: 125 LLMLDRFVNLVDEGVDVALRIGNLADSTHMSTRIGGDVRRVVVAAPQYLDSRAAITEPSD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241
           L +H+LI F +     +E  +W     +    PR         VNS  +       G G+
Sbjct: 185 LSRHDLIAFSNF---GLE--SWSFAPAKGTSVPRTVHFTPRYLVNSVRAAAASAAEGMGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             L  Y V +   +  L  ++     P+  V+   P+      K++ F +F   + R
Sbjct: 240 TRLYSYHVAEYVRDGRLRVVLHQAEPPALPVHILTPQGRAAVPKVRTFIDFAVPRLR 296


>gi|325168906|ref|YP_004280696.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064629|gb|ADY68318.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 296

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 132/286 (46%), Gaps = 22/286 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR G F  AA      ++++SR+++ LE  + ++LF R  R L LTE+G  LH  T
Sbjct: 9   FNLVARHGGFGKAARASGRPKATLSRRVAELEAALQLRLFERGVRSLKLTEEGRALHERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  +L+ T   +     KP G+LRI+  +   Q+ +      F L YPD+++++  ++
Sbjct: 69  AALLTELDETAASIAAGGDKPRGRLRISAPLLFSQSAMGRIAAGFSLKYPDVRLEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  IR+  P    SL+ R  +   +   A P+       P  + ++    
Sbjct: 129 RAVDMIEEGYDLVIRV-NPDPDESLVGRVFLHDRLVVVANPNL------PRPVADITSPG 181

Query: 191 LITF-GDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALLPD 246
           ++   GDL+        W  +V    G  +I     L ++S + +      G G A +P 
Sbjct: 182 VVRGPGDLL-------TW--SVRTAKGSSKIKVEPVLALSSLIMVRDAVRTGVGAACMPI 232

Query: 247 YIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +V  +     ++   D+      ++  YP     + ++ AF +F+
Sbjct: 233 SLVSHDLADGTLLNWGDIEGSEIALWVLYPSRRLLSARVSAFLDFL 278


>gi|307307291|ref|ZP_07587027.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306901805|gb|EFN32405.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 319

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 119/293 (40%), Gaps = 23/293 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DWD  R F  V  +GS + AA ++ LSQ ++  +I GLE  +G  LF R   GL  T 
Sbjct: 28  NVDWDDQRAFLAVMETGSLSAAARRMGLSQPTVRARIEGLEAALGTALFTRSVHGLVPTP 87

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               +      + H  E         S   +G++R++ +  +G  +L   L+     +P 
Sbjct: 88  TAEAMATPARAMAHASEAMLRAASADSATAAGRVRLSVSEFVGIEVLPPMLRSLRDKHPQ 147

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++  L N   D+     D A+R+  P Q S+L+ +K+  I +  +A   YL     P 
Sbjct: 148 LTVEFELSNARADLLDQQVDVAVRMHPPEQ-SALVAKKVPLIPLGLFAHRDYLAVYGRPA 206

Query: 182 SIQELDKHNLI----TFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
           +  E+  H  I      GDL            +W+A  D              S+ + + 
Sbjct: 207 TKAEVRDHLFIGPDRNRGDLAVAAQIAGSVPVSWIARTD--------------SHPAQLA 252

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
               G GIA+         P L R++ DV  P    +    E L+   ++ A 
Sbjct: 253 LARAGLGIAVAQIPAAARYPELERVLPDVELPQLPTWIVTHENLRRLPRVAAL 305


>gi|300309577|ref|YP_003773669.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300072362|gb|ADJ61761.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 301

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 128/287 (44%), Gaps = 14/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F    R GSFT AA +LHL+QS+ISRQI+ LE  +G KLF R  R L LT  G +    
Sbjct: 14  AFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRALRLTVSGQRY--- 70

Query: 70  TSEVYHKLETTQIELQESSVKPSG--KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            + +  +L     E  E  +K  G  +L +A +  +    L   L  F   +PD  ++L+
Sbjct: 71  -AALVQRLLVDCAEATEDIMKRKGHQELTVACSQGVAVLWLTPRLARFRARHPDCHLRLV 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++    +S    D  I   +    + L  R+L    +    +P YL      L+ ++L 
Sbjct: 130 VNDSLAQLSETDFDMGIYFLRDGPPAGLAARRLYDEEVFPVCSPGYLDG--RLLAPEDLR 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
              L+T  D   + M   NW+A    P  + RI   +  N Y  ++Q  + G G+ L   
Sbjct: 188 HQTLLTLEDGQRQWMSWQNWMAHNGMP--DVRIEHQILSNQYPVLLQLAMEGQGVVLAWR 245

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++    +   LVR  +   +     Y  +P         +AFR+++
Sbjct: 246 HMIDACMEQGLLVRACQASASLGGGYYAVWPRDRIEHAAARAFRSWL 292


>gi|262369004|ref|ZP_06062333.1| LysR family transcriptional regulator [Acinetobacter johnsonii
           SH046]
 gi|262316682|gb|EEY97720.1| LysR family transcriptional regulator [Acinetobacter johnsonii
           SH046]
          Length = 320

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 130/289 (44%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T  G +L 
Sbjct: 29  MRIFCVAAESRNFKEAATQLGISPQLVTRAIKELEEQRGEILFYRSTRQIKITADGERLA 88

Query: 68  RVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   YPDI +  
Sbjct: 89  KQARFAVGSIDALLVKDTKEKRDEMRGTVRLTVSSVLGRKLVVPALAEFATRYPDIVVDC 148

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +   D+  +  D  IR    +  +  + R+L  ++ ++   P  +     P  I +L
Sbjct: 149 VLTDSHSDVIDERIDIGIRF-GFLPDNRYVARELAKVNFYSVGTPELIDKVGMPKKIIDL 207

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           DK+ L    D   K    + W  T  R     +PR     + +     Q  + G G   +
Sbjct: 208 DKYPLTALFD--HKTGRYWPWTFTESRSFTPSKPRFITDDLEAEF---QAILAGVGFGHM 262

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V     +  L++I+ +  +P + +Y   P+      +++A  +++
Sbjct: 263 PGFLVLPWLRSGKLIQILHEETSPVWRLYLYRPQRGPTPLRIRALFDYL 311


>gi|149928385|ref|ZP_01916624.1| Transcriptional Regulator, LysR family protein [Limnobacter sp.
           MED105]
 gi|149822878|gb|EDM82125.1| Transcriptional Regulator, LysR family protein [Limnobacter sp.
           MED105]
          Length = 190

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 4/189 (2%)

Query: 5   WDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+L++   F  V  +G+F+  A Q H +QS+IS+Q+  LE +VG+ L  R  R   LTE
Sbjct: 1   MDRLKLMETFVRVVETGNFSAVARQAHTTQSAISKQVQALEADVGVLLLVRSTRSHALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   +V   LE  + E+  +  + SG LR+A  +  G+  +   L  F   YP 
Sbjct: 61  AGRLYYQRCRQVLDTLEEARSEVHRAEHEVSGLLRVAAPVAFGRIHIVPRLAAFYERYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L LD+  +D+     D A R+   ++ S LI R++ ++      +  YL     P 
Sbjct: 121 MRIDLQLDDSFVDLVAAGIDVAFRV-GALKDSRLIARRIGSVSRAVIVSAAYLARHGTPQ 179

Query: 182 SIQELDKHN 190
              +L  HN
Sbjct: 180 KPDDLSAHN 188


>gi|54309528|ref|YP_130548.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913964|emb|CAG20746.1| Hypothetical transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 301

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 140/304 (46%), Gaps = 22/304 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V    SF+  AE   +++S +S++IS LE ++G++L YR  R LTLTE GS 
Sbjct: 5   DDLVLFTQVIEHASFSKVAELNKITKSVVSKRISKLENQLGVQLIYRTTRKLTLTEPGSI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+  + ++    ++    +   +   SG +R++     G+ LL   L +F   +P + ++
Sbjct: 65  LYHRSKDINQVAQSAFDAITGYNEALSGNIRVSVPTISGELLLAEALSDFCQKHPGLTVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +DN  +D+     D  IR    ++ SSLI R +        A+  YL+    P + + 
Sbjct: 125 MSMDNHFVDLVAQNYDLVIRTGY-LEDSSLIARHIFNSRWVICASADYLEKHGVPETPKA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L  HN + +     +    F+WL   +          L+V+   S      + +  +  +
Sbjct: 184 LHHHNCLGYTQ---QSTGPFDWLFVRN----NTETYTLKVDGNFSSDNAVALRKATLANN 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF-----RNFIF 291
           GIA LP  +V D+     L+ ++ +       +Y  YP   K + +++A        +I 
Sbjct: 237 GIAYLPTCLVFDDLKSGKLIEVLAEHSGKVVGIYAVYPYTKKPSKRIQALIEHIRERYIT 296

Query: 292 LKAR 295
           +K R
Sbjct: 297 MKER 300


>gi|330882796|gb|EGH16945.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 274

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 9/273 (3%)

Query: 32  SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91
           +++SR++  LE ++G +L +R  R L LT+ G   H         L     +L     +P
Sbjct: 3   NTVSRKVQQLEIQLGTRLLHRSTRKLVLTQAGEDFHERCVGAVDGLMDAAEQLVSGREEP 62

Query: 92  SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151
            G+LRIA   D         + +FL  YP +Q++ +L ++  D+  D  D A R   P+Q
Sbjct: 63  GGRLRIAAMADFFDFFSMEWVADFLAEYPRVQLEFVLSDERADLIADRLDIAFR-GGPLQ 121

Query: 152 SSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLAT 210
            S  + R+L+   H    A+P Y+     P S+Q L  H  ++     P     +  L  
Sbjct: 122 DSGYVGRQLIEEGHDTMVASPAYIAAHGMPDSLQSLHGHYCVSTAH--PGGSTVWRLLGP 179

Query: 211 VDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPS 266
            D  + E +++     N+  ++ +  + G GIALLP  +++    +  LV ++      S
Sbjct: 180 -DAKMHEVQMASRFNANTAQALRKATLAGLGIALLPATLIRSDLRDGRLVPVLTQYQRTS 238

Query: 267 FTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             ++  YP        + AF   +  K RD  F
Sbjct: 239 HGLHVLYPSRQHLPPAVSAFIALVMEKLRDKAF 271


>gi|319792802|ref|YP_004154442.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595265|gb|ADU36331.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 294

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 144/301 (47%), Gaps = 23/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKTTIEELVAFRTVVDTGSITAAAEQLGHTVSGISRALSRLEQKLDTTLMRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+   + T  +   ++  + ++     +P+G+LR+        + +   + EF  LYP
Sbjct: 61  EEGAAFLQRTRAILDAIDDAEEQMAARREQPAGRLRVNAASPFMLHAIVPLVPEFRKLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+     D AIR+  P++ S+L  R L T  +   A+P Y++   +P
Sbjct: 121 QISLELDTDDLPIDLLERRTDIAIRI-GPLRDSTLHARPLGTHRLRVLASPAYIEAHGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  EL  H L+ F    P+ +  +    A  D     P    L  +S  ++ Q  + G+
Sbjct: 180 RTAAELADHALLGFTQ--PESLNRWPLRGAHGDEWAIAP---TLAASSGETLRQLALAGA 234

Query: 240 GIALLPDYIV---KDNPNLVRIME----DVITPSFTVYFCYPEALKNT---GKLKAFRNF 289
           GI  L D++    + +  LV+++     DV  P   VY+      +NT    ++ +F +F
Sbjct: 235 GIVCLADFMTAADRASGALVQVLAKETVDVRQPVNAVYY------RNTQLSARITSFLDF 288

Query: 290 I 290
           +
Sbjct: 289 L 289


>gi|56412411|ref|YP_149486.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361347|ref|YP_002140982.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126668|gb|AAV76174.1| putative LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092822|emb|CAR58248.1| putative LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 313

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 125/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 15  LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 75  ASIRPALAHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 135 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 195 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 253

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 254 DVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 303


>gi|114562097|ref|YP_749610.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333390|gb|ABI70772.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 307

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 130/304 (42%), Gaps = 29/304 (9%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R F  VA++GSFT AA  LHL +SSIS  +  LE  +G +LF R  R +TLT  G+
Sbjct: 4   FEAMRRFVHVAQTGSFTQAAAALHLPKSSISTAVESLEQLLGTRLFQRSTRRVTLTHDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++ H ++  + + Q  +    G +++          +   L E+   YP + +
Sbjct: 64  IYLAQCRQILHDIDALESQFQHENDSVRGVIKVDMPSRFANKTVLPRLSEWCERYPHVNV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +  ID      DC IR+     +S LI R L    +    +P Y++    P ++ 
Sbjct: 124 VISSTDYHIDPIKSGVDCLIRVGNQ-GNSLLIARPLTQYRIINCISPTYIQRYGTPSTLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---------------PRISCLQVNSYL 229
           +L  H +I +   +P      N  A++D    E                 IS    ++Y 
Sbjct: 183 DLQHHRMIGY---VPT----VNHSASIDYNSAEFDYVEQGQNCQHTVPSVISVTNSDAYT 235

Query: 230 SIMQYCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           S    C+ G GIA +P   V D  N   L+RI+         V   YP   +   +L  F
Sbjct: 236 SA---CLAGLGIAQIPQMGVTDYLNTGRLIRILHQYEAAPMPVSILYPSRSQLPKRLSLF 292

Query: 287 RNFI 290
            +++
Sbjct: 293 MDWL 296


>gi|311694571|gb|ADP97444.1| transcriptional regulator, LysR family protein [marine bacterium
           HP15]
          Length = 303

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 136/299 (45%), Gaps = 16/299 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D +    F  V     +T AA+ L + +S +SR ++ LE  +G++L  R +R + +T
Sbjct: 1   MSIDLNDYFYFVHVVEKKGYTAAAKALDMPKSRLSRHVAQLEERLGVRLLQRSSRNVAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   ++   ++  + E  +  +     + SGK+ I+ ++ + Q +L   + +F  L+P
Sbjct: 61  EEGKSFYQHARKLVDQFEMAEAAMDNRGGRLSGKVVISCSLGVAQFVLFDIVTDFARLHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++ I+  + N  ID+  +  D AIR     +  SSLIQR +  +    Y +P YL+   +
Sbjct: 121 NVLIEQRVTNSMIDLITEGVDIAIRGHSGELPDSSLIQRFIANVEWQFYCSPGYLEQLEQ 180

Query: 180 PLSIQELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
             +  +      +  G     + IP  ++  + L T      +     L      +I Q 
Sbjct: 181 LQTPYDFASCRFLKVGRAGAKEAIP--LQHKDGLRT-----HQTTHIALCSEDMSTIRQA 233

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G G+  LPDY+ +   +   LVR++   ++   ++    P  +      KA   FI
Sbjct: 234 AIDGLGVTALPDYVCRAPVEAGQLVRVLPAWVSQYASLSLLMPSRVGVPPHTKALAEFI 292


>gi|255318542|ref|ZP_05359775.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262378767|ref|ZP_06071924.1| LysR family transcriptional regulator [Acinetobacter radioresistens
           SH164]
 gi|255304534|gb|EET83718.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262300052|gb|EEY87964.1| LysR family transcriptional regulator [Acinetobacter radioresistens
           SH164]
          Length = 320

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 130/289 (44%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T  G +L 
Sbjct: 29  MRIFCVAAESRNFKEAATQLGISPQLVTRAIKELEEQRGEILFYRSTRQIKITADGERLA 88

Query: 68  RVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   YPDI +  
Sbjct: 89  KQARFAVGSIDALLVKDTKEKRDEMRGTVRLTVSSVLGRKLVVPALAEFATRYPDIVVDC 148

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +   D+  +  D  IR    +  +  + R+L  ++ ++   P  +     P  I +L
Sbjct: 149 VLTDSHSDVIDERIDIGIRF-GFLPDNRYVARELAKVNFYSVGTPELIDKVGMPKKIIDL 207

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           DK+ L    D   K    + W  T  R     +PR     + +     Q  + G G   +
Sbjct: 208 DKYPLTALFD--HKTGRYWPWTFTESRSFTPSKPRFITDDLEAEF---QAILAGVGFGHM 262

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V     +  L++I+ +  +P + +Y   P+      +++A  +++
Sbjct: 263 PGFLVLPWLRSGKLIQILHEETSPVWRLYLYRPQRGPTPLRIRALFDYL 311


>gi|171317594|ref|ZP_02906781.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097222|gb|EDT42070.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 299

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 119/285 (41%), Gaps = 6/285 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 3   IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 63  EAALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPMLAQLRRDHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P Q  +L+ R++  I +  +A   YL     P
Sbjct: 123 GLVIELVPTDRIQDVLNREADIAVRMAPPAQ-DALVARRVGEIDVGLHARDDYLARNGTP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H LI F  + P     F   A    P+       L+ +S L+ +     G G
Sbjct: 182 STTGELAHHALIGFDTVTP-----FIRSAGRGMPLWNRDAFALRTDSNLAQLAMIRAGYG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           I    + + K +  LVR++ D  T     +    E L+ + + +A
Sbjct: 237 IGFCQNGLAKRDARLVRVLPDGPTMKLETWVVMHEDLRTSPRCRA 281


>gi|153950653|ref|YP_001399411.1| DNA-binding transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|152962148|gb|ABS49609.1| transcriptional activator AaeR [Yersinia pseudotuberculosis IP
           31758]
          Length = 303

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 111/252 (44%), Gaps = 30/252 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AA +L  S SSIS+ +S LE E+ +KL  R  R + LTE G   
Sbjct: 6   QMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGRIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  +++    +L   +  P+G LRI  +  + QN+L     + L  YP + + L
Sbjct: 66  YQGCRRMLQEVQQVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKAYPGLSVNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  IR+   +Q+S L  R+L  + M   AA  YL     P      
Sbjct: 126 VTGIPAPDLIADGLDVVIRV-GALQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPEK---- 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-----IGEPRISCLQV--------NSYLSIMQ 233
                       P  M +++WL    RP     +  P     Q+        N   ++++
Sbjct: 181 ------------PGDMANYSWLEYNVRPDSNFELIAPEGITTQISPQGRFVTNDSQTMIR 228

Query: 234 YCVLGSGIALLP 245
           +   G+GIA  P
Sbjct: 229 WLKAGAGIAYAP 240


>gi|327396128|dbj|BAK13550.1| HTH-type transcriptional regulator PtxR [Pantoea ananatis AJ13355]
          Length = 298

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 117/244 (47%), Gaps = 8/244 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V    SFT AA  L +S+S ISR+I+GLE  +GI+L  R  R +TLTE G   +  
Sbjct: 12  LFARVVELKSFTEAARVLGVSKSHISREIAGLEQRLGIRLLQRTTRRMTLTELGQAYYPF 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++   +  +Q++   P+G +R+   +  G   +   L  FL  +  I + L L 
Sbjct: 72  CVRMLDEMHRAEDFVQQAHQNPAGNVRLQAPVTYGCQCIVPLLNRFLRGHLHINVDLSLT 131

Query: 130 NKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + + +   D  D AI +R   P Q +    R L  IH   YAAP YL         + L 
Sbjct: 132 DNNDETLGDGVDIAIVIRAHAPRQGNF---RVLSDIHWGLYAAPDYLAQHPAISHPRLLP 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+L+ F    P       +     R   + R S  + N+ ++++   + G+GIA LP Y
Sbjct: 189 RHDLLMFHG--PAHTAALPFRRDKLRLAVDVR-SRFRANNSMALLNAALAGNGIAYLPSY 245

Query: 248 IVKD 251
           +V++
Sbjct: 246 MVQE 249


>gi|327191721|gb|EGE58723.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 302

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 20/294 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR+GS T AA +L L+QS++SRQ+S LE ++G++LF R  + + LT  G    
Sbjct: 16  LAAFEAVARTGSVTAAARELDLTQSAVSRQVSALEEQLGVELFLRERQTMRLTLAGDGYA 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E   ++ +  + L+ +     G L +A     G   L   L  FL   P + I L 
Sbjct: 76  REIREALRRISSASLNLRAN--PHGGTLNLAILPTFGTRWLAPRLGRFLAANPGVTINLA 133

Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                 D  +D  D AI    P     + + L+  + V      +   H +   ++ LS+
Sbjct: 134 TRLSPFDFRLDSIDAAIHFGHPHWPGAELTLLMSERTVPACSPDFLERHTITGPQDLLSV 193

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L   +L T     P   E   W A     +    +  +  + + +  Q  + G G+AL
Sbjct: 194 PLL---HLTT----RPDAWE--QWFA--GNGVSFESVHGMLFDQFATAAQAAIAGLGVAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP +++++     +LV  ++  +      Y  +P    +   L AFR++I  +A
Sbjct: 243 LPTFLMQEELRRGDLVAAVDREMESRERYYLAFPRERADYAPLAAFRDWIVAEA 296


>gi|86138220|ref|ZP_01056795.1| probable transcriptional regulator [Roseobacter sp. MED193]
 gi|85825247|gb|EAQ45447.1| probable transcriptional regulator [Roseobacter sp. MED193]
          Length = 292

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 118/254 (46%), Gaps = 25/254 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V  R  +F  AA+++ ++Q ++++Q+  LE  +GI LF R  +GL LT  G  
Sbjct: 8   NGLRAFDVSGRRLNFRAAADEMGVTQGAVAQQVRQLEAHLGITLFERLPKGLALTPAGRS 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H+  +  + +L +   +L+      +GK+ I+ T       L  NL +F   +P+I ++
Sbjct: 68  YHKRIAHAFAELRSATAQLKPE----NGKVLISVTPTFASKWLIPNLPDFSNRHPEIDLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   K      D  D A+R   P   ++L    L   ++ A  AP  ++  R P S + 
Sbjct: 124 ILATEKVSSFHSDGIDLAVRQGSPPFGAALDATLLFRQNLIAVVAPKLVQTARPPYSDET 183

Query: 186 L-------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L       D H      DL PK + ++         IG+     L+++     +   + G
Sbjct: 184 LAHLPKIHDTH------DLWPKVLSEWG--------IGDQSKRGLRLSQTALAVDAAISG 229

Query: 239 SGIALLPDYIVKDN 252
            G+AL+  ++V ++
Sbjct: 230 QGVALVSRFLVAND 243


>gi|254560865|ref|YP_003067960.1| LysRl family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254268143|emb|CAX24027.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           DM4]
          Length = 310

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 123/287 (42%), Gaps = 12/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F   A +GSF+ A   L LS S IS +I  LE  +G  L  R  R + LTE G  
Sbjct: 5   ESVRIFMRAAETGSFSAAGRSLRLSPSVISYRIQTLEEHLGCLLLTRTTRRMNLTEAGRV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +E  +  ++     P G L++   + LG+ ++   +  F   +P+  + 
Sbjct: 65  FYDRCLDIAASVERAEKSVETQGAAPRGTLKVTAPLTLGRRVVAPLIPAFRERHPEADVH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+  +  D A+RL + ++ S+   RK+  I     A+P YL     P S  +
Sbjct: 125 LRLSDHLLDLVQEAVDVAVRLAQ-MRDSTFTLRKVADIERILCASPGYLAEHPAPESPAD 183

Query: 186 LDKHN--LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H   L+ F        E F W L   D  +  P    +  +    + ++ + G GI 
Sbjct: 184 LIDHACLLLRF-----PGSEQFRWSLRDGDEVVTLPVAGPIDADDGDVLTEWALQGQGIV 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L P + V     +  LV ++        T+   YP       + K F
Sbjct: 239 LKPVFEVAPYLADGRLVPVLPGTPPTPVTLGVVYPSRKMLPARAKTF 285


>gi|255602559|ref|XP_002537878.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
 gi|223514740|gb|EEF24504.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
          Length = 300

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 120/282 (42%), Gaps = 8/282 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  VA   SF+ AA QL ++ ++ S+ I  LE   G+ LF R  R + LTE G+ 
Sbjct: 7   DGVRTFLAVAEHRSFSAAAAQLGMTTTAASKAIKTLEQRHGVILFKRTTRSVALTEAGAD 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L         +++     L     KP G LR+     LG  +L+  +  F   Y DI + 
Sbjct: 67  LFTQLRSATSQIDDAFSALNAHRDKPIGTLRLTAPRALGALILKTLIPPFRQRYADIHLD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LD+  +D+     D  IRL   +    ++ +    +      +P Y ++   P +  E
Sbjct: 127 ISLDDGVVDLVAAGFDAGIRLGHAVAKDMVMVQLTPELIWTVVGSPDYFRHAGRPATPAE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I +    P       W    D  + E R   L VN    I ++   G G+A LP
Sbjct: 187 LIHHQTIRY--RFPSSGALPRWRFK-DCEV-ETR-GGLIVNDTTLIAEFARQGQGLAYLP 241

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
              +KD   N  L  I+ + I  +  +Y  +P   +   KL+
Sbjct: 242 RIEIKDDLLNGRLENILAEDIPQTSGLYLYFPARTQQQHKLR 283


>gi|254487446|ref|ZP_05100651.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214044315|gb|EEB84953.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 298

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 124/274 (45%), Gaps = 13/274 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +WD LR+F  VAR  S + A + + L  +++ R+++ +E  +G  LF +   G  LT
Sbjct: 1   MLGNWDDLRLFLAVAREQSLSGAGKLVRLDPATLGRRMARVEKGLGATLFVKSPTGYALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L          +      + E +    G++RI         LL       +  +P
Sbjct: 61  EAGTQLLARAEAAEQTMRMATAGVAEPTDHLGGQIRIGAPDGCANYLLPQVCARLVAQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQ++   +  ++S   AD AI +  P  +  L+ +K+    +H  AA  YL    +P
Sbjct: 121 GLDIQIVALPRVFNLSRREADMAIGVSAPT-AGRLVVQKIADYQLHLAAAESYLA-AHDP 178

Query: 181 L-SIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           +  I +L  H L+ +   IP  + D   ++LA     +G  R+  L  NS    +     
Sbjct: 179 IEGIADLQAHRLVGY---IPDMIFDRELDYLAE----LGMTRVP-LASNSVSVQVNMIRQ 230

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271
           G G+ ++ D+ +   P + RI+ D ++ S   Y 
Sbjct: 231 GGGVGIVHDFSLPTTPGVKRILTDQVSLSRAFYL 264


>gi|152984384|ref|YP_001346963.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959542|gb|ABR81567.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 306

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+VF   + SGS + AA QL +S +  S  +  LE+E+ ++LF R  R L LT +G 
Sbjct: 4   YDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  LQ    + +G L+++   D G+NLL   L EF   YP + +
Sbjct: 64  AFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPRLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           +L+L ++  D+     D AIR   P   SSL+   L   +     AAP YL    EP   
Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGAPA-DSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182

Query: 184 QELDKHNLITF 194
            +L +HN + +
Sbjct: 183 DDLREHNCLLY 193


>gi|299067204|emb|CBJ38400.1| transcriptional regulator (LysR family) [Ralstonia solanacearum
           CMR15]
          Length = 297

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 137/284 (48%), Gaps = 24/284 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  +  +     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGTAFLTHARGILAAVDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ ID+  +  D AIR+   ++ S+L  R+L T  +   A+P YLK    P
Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRI-GALRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-----RIS-CLQVNSYLSIMQY 234
            ++  L  H L+  G + P+ +   +W      P+  P     RI+  L+ +S  ++ Q 
Sbjct: 180 RTVDALRHHALL--GLVQPESLN--HW------PLRGPHGDRLRITPTLKASSGETLRQL 229

Query: 235 CVLGSGIALLPDYIV---KDNPNLVRIMEDVIT----PSFTVYF 271
            + G+GI  L D++    +   +LV+++ +       P   VY+
Sbjct: 230 ALQGAGIVCLADFMTARDRRAGDLVQVLPEATVEIQQPIHAVYY 273


>gi|270263848|ref|ZP_06192116.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042041|gb|EFA15137.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 309

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 136/290 (46%), Gaps = 23/290 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA + SFT AAE+L +S+SS  + ++ LE  +  +L +R  R ++LTE+G   +
Sbjct: 15  LLVFVRVADARSFTLAAERLGISRSSAGKSVNRLEERLATRLLHRTTRSVSLTEEGLVFY 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +  + +    P G+LRI   +  G+  +   L++FLL +P++ +++ 
Sbjct: 75  EHALRILAEVDEAETAINQRHQTPRGRLRIDLPVAFGRLHILPILRDFLLQWPEVDVEVT 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+  +  D AIR+      S L+++ L    +   A+P YL N   P +  +L 
Sbjct: 135 FSDDYSDLVREGIDLAIRIGGN-DDSRLVRKVLAPHRLITCASPRYLDNHGVPQTPDDLV 193

Query: 188 KHNLITF---GDLIPKCMEDFNWLATV-----DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +H+ + F   G  +P       W   V     D P+G      ++ N+  ++    + G 
Sbjct: 194 EHHRLVFSHQGMPVP-------WRYQVNGQHRDEPVG----GRMRFNNTEALRDSALAGL 242

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+  L  ++V +      LV ++E        +   YP     + K+K F
Sbjct: 243 GLCQLGAFLVGEQLSAGTLVPVLEKYCRAEAPICAVYPTRRYLSPKVKRF 292


>gi|152981603|ref|YP_001353709.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281680|gb|ABR90090.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 298

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 19/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ +F  +    SFT AAE L L +++++  ++ LE  +G +L  R  R +T T  G 
Sbjct: 4   FQEMEIFVRIMERRSFTKAAEDLQLPRATVTNAMARLEERLGSRLLNRTTRLVTPTLDGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E      + ++  P G LR+     +  + L   L  F   YP +++
Sbjct: 64  AYYTRCVRLLTDIEEADGAFRNTA--PKGLLRVGVQGTVAAHFLVPTLPAFFARYPGMEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R   P Q SSLI R++  +   + A+P YL    +P +I+
Sbjct: 122 HMDESDRLVDLVREGIDCVLRGGTP-QDSSLIARRIAMLEQVSCASPAYLARYGQPRNIE 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-G 238
           +L KH  + +     G   P        + ++  P     IS      Y      C L G
Sbjct: 181 DLTKHKAVNYISSASGKPFPLEFMVNGRMQSIVLPTA---ISVTGTKVYTG----CALAG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  +P Y ++    +  L +I+ D   P   +   YP+  + + +++ F  ++
Sbjct: 234 LGIVQMPRYHIEQELQDGRLQQILPDTPPPGMPLSVLYPQNRQLSARIRVFSEWL 288


>gi|49084244|gb|AAT51185.1| PA3565 [synthetic construct]
          Length = 307

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+VF   + SGS + AA QL +S +  S  +  LE+E+ ++LF R  R L LT +G 
Sbjct: 4   YDDLQVFVHTSDSGSLSAAARQLGISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  LQ    + +G L+++   D G+NLL   L EF   YP + +
Sbjct: 64  AFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           +L+L ++  D+     D AIR   P   SSL+   L   +     AAP YL    EP   
Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGAPA-DSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182

Query: 184 QELDKHNLITF 194
            +L +HN + +
Sbjct: 183 DDLREHNCLLY 193


>gi|78062934|ref|YP_372842.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970819|gb|ABB12198.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 318

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 127/270 (47%), Gaps = 8/270 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF      G+F+  A +    Q +IS+ ++  E E+G++L  R    L  T++G + +
Sbjct: 7   MRVFVRAIELGNFSAVAREEGTGQPTISKIVAAFEKELGVRLLERSTTSLAPTDEGRRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +  +   E++  +V+P GKL +   + LG+  L   + EFL  +P+I+++L 
Sbjct: 67  DRCKRVIDEYASAVAEVRGQTVRPVGKLVVNAPLGLGELRLNALVLEFLAAWPEIEVELQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  +  D AIRL   +   + + R + +      A P Y+    +     +L 
Sbjct: 127 LTDRVIDLVEEGVDVAIRLGNLLPPDA-VARHIASSPRLLVATPGYVSQAPKLRRPDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KH  + +       + +    A  D  +  P     +VNS +++ +  + G  +   P +
Sbjct: 186 KHEYVGYAR---ADIANELAFARGDEQVVVPVRGRYRVNSSMALRECFLAGHAVGSGPAW 242

Query: 248 IVK---DNPNLVRIMEDV-ITPSFTVYFCY 273
           +V+   D+  LVR++    + P  T++  Y
Sbjct: 243 LVQDLIDSGQLVRLLPKWDMVPPHTLHLVY 272


>gi|71734577|ref|YP_273368.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257487441|ref|ZP_05641482.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289647230|ref|ZP_06478573.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|289678260|ref|ZP_06499150.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
 gi|298485772|ref|ZP_07003851.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|71555130|gb|AAZ34341.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298159798|gb|EFI00840.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|320325797|gb|EFW81858.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327285|gb|EFW83299.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330887760|gb|EGH20421.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330899569|gb|EGH30988.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330938866|gb|EGH42384.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           pisi str. 1704B]
 gi|330988344|gb|EGH86447.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331008966|gb|EGH89022.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 315

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILASVEEAEAEASDAHARPAGQLKVHSMPGVGQHYVIDAIARYRRNHPDVAFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K         +L
Sbjct: 126 TMTHRVPDLLEEGYDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAHKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+        WL   D P G+  +    S L VNS  ++      G GI 
Sbjct: 186 LNHACLR---LVSPVFPLDKWL--FDGPEGQEMVTINSSPLLVNSADAMKTAISSGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y   +   N  LVR++ D  +    +Y  YP            R ++  K R W
Sbjct: 241 ILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPS-----------RQYLDAKIRTW 287


>gi|257483421|ref|ZP_05637462.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330986124|gb|EGH84227.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012718|gb|EGH92774.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 302

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 130/279 (46%), Gaps = 9/279 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +  SGS + AA+    S +S+ R ++ LE+ +G++L  R  R + LT++G +  R  
Sbjct: 10  FVRIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTDEGEEYLRWA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +    +  +  L        G LR+   ++ GQ  +   +  FL  + +I ++L L++
Sbjct: 70  RRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLCEHQNINVELNLND 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + + +  +  D A+R+   +  S+++ R++    + + A+P YL+      + + L +H 
Sbjct: 130 QIVPLLDERLDLALRIGH-LPDSAMVARRIGATRLVSCASPGYLRTAPLLDTPKSLPEHA 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            IT      +          +   I  PR+ C QV +       CV G G+  L  Y V 
Sbjct: 189 CITLASHGRQWYFRHQGKELIQDII--PRLVCNQVRAA---SLACVQGLGVTRLMHYQVA 243

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           D   +  L+R++ D  T    +   YP AL+ + ++KAF
Sbjct: 244 DELADGRLIRVLNDFETADLPIQLVYPHALQLSPRVKAF 282


>gi|188580335|ref|YP_001923780.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179343833|gb|ACB79245.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 310

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 12/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F   A +GSF+ A   L LS S IS +I  LE  +G  L  R  R + LTE G  
Sbjct: 5   ESIRIFMRAAETGSFSAAGRSLRLSPSVISYRIQTLEQHLGCLLLTRTTRRMNLTEAGRV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +E  +  ++     P G L++   + LG+ ++   +  F   +P+  + 
Sbjct: 65  FYDRCLDIAASVERAEKSVETEGAAPRGTLKVTAPLTLGRRVVAPLIPAFRERHPEADVH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+  +  D A+RL + ++ SS   RK+  I     A+P YL     P S  E
Sbjct: 125 LRLSDHLLDLVQEAVDVAVRLAQ-MRDSSFTLRKIADIERILCASPAYLAEHPAPESPAE 183

Query: 186 LDKHN--LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H   L+ F        E F W +   D  +  P    +  +    + ++ + G GI 
Sbjct: 184 LIDHACLLLRF-----PGSEQFRWSVRDGDEVVTLPVSGPIDADDGDVLTEWALQGLGIV 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L P + V     +  LV ++        T+   YP       + K F
Sbjct: 239 LKPVFEVAPHLADGRLVPVLPGTPPTPVTLGVVYPSRKMLPSRAKTF 285


>gi|296136448|ref|YP_003643690.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
 gi|295796570|gb|ADG31360.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
          Length = 299

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 130/288 (45%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A + SF  A   L LS S++ + I+ LE  +G++LF+R  R ++LT++G    
Sbjct: 7   LAAFVRAAETLSFVAAGRDLGLSASAVGKSIARLEKHLGVRLFHRTTRQISLTDEGMTFF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++E  + EL ++   P G+L+I+    +G  LL   + +F   YP+I ++  
Sbjct: 67  VRCRSALQEIEDAEAELSKAKGTPHGRLKISLPT-IGYRLLLPVIPQFRHAYPEIDLEFD 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  IR   P+  S+L  + L        A+P Y          ++L 
Sbjct: 126 FSDRLVDVINEGFDAVIR-SGPLSDSTLTAKPLCPYRFIVCASPAYFVQYGALGDARDLA 184

Query: 188 KHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H  + F       ++++  N ++ +  P    R   L  N+  +++   + G GIA +P
Sbjct: 185 NHVCLRFKYPSSGKLQEWLVNGVSVLQGPSASVRSQQLVFNNTEAVLSAALQGLGIAYVP 244

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D++ ++      L+ ++E   T        +        +L+ F +F+
Sbjct: 245 DFVAREPLAEGKLLPVLESASTRQGMFQILWATNRHMVPRLRVFIDFL 292


>gi|153831537|ref|ZP_01984204.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148872047|gb|EDL70864.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 299

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 38/298 (12%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE+ +L+ S +S++I+ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVIEMGSFSKVAEENNLTNSVVSKRIARLEEEIGAQLLYRTTRKLTLTEAGKV 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+   +
Sbjct: 124 MSLDNRFVDLVAGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIVKNGKPIEPID 182

Query: 186 LDKHNLITF----------------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229
           L  HN + +                GD I K    F+                   ++  
Sbjct: 183 LTTHNCLQYAYQTTGATDWQFKGKQGDYIVKVSGSFS------------------TDNAT 224

Query: 230 SIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           ++ +  + G GIA +P  +V  +     LV I  +++     +Y  YP   +   K+K
Sbjct: 225 ALRKAALGGHGIAYVPRCLVYHDIRSGELVDIFPELVGKKLGIYAVYPFTRQPPNKVK 282


>gi|119961985|ref|YP_946376.1| LysR family transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119948844|gb|ABM07755.1| putative transcriptional regulator, LysR family [Arthrobacter
           aurescens TC1]
          Length = 311

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 136/302 (45%), Gaps = 31/302 (10%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++LR F  +AR G FT AAEQL L+Q S+SRQI+ LE ++G+ LF+R   G TLT  G 
Sbjct: 3   LEQLRSFEAIARVGHFTRAAEQLFLAQPSLSRQIAALEADLGMALFHRGPSGATLTNAGE 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L  +   +    +T + ++ E +    G++R+     L  +L+   L  F   +P +++
Sbjct: 63  LLLPIARRMLGDAQTAREQMNELAGLRRGRIRLGAPPTLCVSLVADVLASFRSAHPGVEL 122

Query: 125 QLILDNKDI------DISMDYADCAIRLRKP-IQSSSLI---QRKLVTIHMHAYAAPHYL 174
            +             + ++D A    R   P +Q + LI     +LV +     A+P   
Sbjct: 123 HITEGGSRFLVEALNESALDLALVVTRGTDPAVQGTELIPLLTEELVVVSAAGSASP--- 179

Query: 175 KNCREPLSIQELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
               E L+++EL +   + F    DL       F+          EP I+ ++     ++
Sbjct: 180 ----EELTLEELARIPQVAFNRSYDLRMATEAAFSASGL------EPVIA-VEGAEMDAV 228

Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF--TVYFCYPEALKNTGKLKAFRNF 289
           +++   G G+A++P  +V   P L      ++ PS   TV       +  +    A + F
Sbjct: 229 LRFVERGLGVAVVPAMVVIGRPGLRS--ARLVNPSLSRTVNLARRNDIGPSAAAAAMQEF 286

Query: 290 IF 291
           IF
Sbjct: 287 IF 288


>gi|254250460|ref|ZP_04943779.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           PC184]
 gi|124879594|gb|EAY66950.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           PC184]
          Length = 300

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 133/266 (50%), Gaps = 12/266 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++  F  +A +GS T AA++LH   S +SR +  LE ++   L  R  R L +T
Sbjct: 1   MKTTLDEMLAFVTIADTGSLTGAADKLHQPTSVMSRILRRLEEKLDTTLIRRTTRRLEMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        E+   +E  + ++      P+G+LRI   +   Q+++   +  F   YP
Sbjct: 61  EEGKLFLDYAREIIASVEFAEEQIVSQREAPAGRLRINAAMPFMQHVIAPMMPGFRDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+ +L   ++ ID+     D AIR+ + ++ S+L  R+L +  +   A+P YL+    P
Sbjct: 121 AIEAELHTSDEIIDLLEQRTDVAIRIGE-LRDSTLHARRLGSSRLRILASPAYLEKAGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
            S+ +L  H L+ F  + P+ +   +W L T D   G  RI   LQ +S  +++   + G
Sbjct: 180 ASVADLANHTLLGF--VQPETLN--HWPLRTADD--GVYRIHPALQASSGETLLTLALNG 233

Query: 239 SGIALLPDYIV---KDNPNLVRIMED 261
           +G+  L DY+    + +  LV ++ D
Sbjct: 234 AGVVCLADYMTGTHRRDGGLVELLVD 259


>gi|208821925|ref|ZP_03262245.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4042]
 gi|208742048|gb|EDZ89730.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4042]
          Length = 305

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE   G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEVFFGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|114769004|ref|ZP_01446630.1| transcriptional regulator [alpha proteobacterium HTCC2255]
 gi|114549921|gb|EAU52802.1| transcriptional regulator [alpha proteobacterium HTCC2255]
          Length = 279

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 108/245 (44%), Gaps = 21/245 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            R F   AR  SFT AAE++ ++QS++S+ +  LET +G+ LF R ARGL+LT+ G KL 
Sbjct: 11  FRAFESAARRLSFTAAAEEIGMTQSAVSQHVKSLETSLGVALFIRRARGLSLTDDGRKL- 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +V   LET  +  +     PS   L +A ++ + Q L+   LKEF    P+I I+ 
Sbjct: 70  --LPQVSSALETLTVAARNFDTVPSKNVLTVAASVSVAQWLISPRLKEFTNKKPEINIRF 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D     AD  I    P  S     R    +       P  L   + P      
Sbjct: 128 LSTIWPDDFHTVRADVEI----PFGSQKQFGRNATRLE------PSGLVALKSP------ 171

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I    LI        W    +   G P +  + V+SY + M   + G+GIAL+ +
Sbjct: 172 KFSGTIKSSTLIESVGTSDGWKLWAESFGGNP-LPKIFVDSYGAAMNLAISGNGIALVSN 230

Query: 247 YIVKD 251
            + +D
Sbjct: 231 ILAQD 235


>gi|332529772|ref|ZP_08405726.1| transcriptional regulator, LysR family protein [Hylemonella
           gracilis ATCC 19624]
 gi|332040793|gb|EGI77165.1| transcriptional regulator, LysR family protein [Hylemonella
           gracilis ATCC 19624]
          Length = 302

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 126/287 (43%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   S T AA  L ++ +++S+ I  LET +G++LF R  R + L+E G    
Sbjct: 9   LAAFEQVAAHRSLTQAAHALGVTPAALSQTIKKLETRLGVRLFERTTRSVNLSEAGHAYL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +     L+    +LQ S+    G LR+  +   GQ L++  L EF   +P I ++L+
Sbjct: 69  ARVAPALASLKAATEDLQSSAGVEGGTLRLTLSYMAGQFLIEPLLPEFFARHPHIGLELM 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+  +DI  D  D  +R+ + ++   +         M   A+P YL+    P    EL 
Sbjct: 129 YDDGFVDIVRDGLDLGMRIGESLERDMVAVPLTREFRMRCVASPAYLREFGTPRHPDELA 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  I +   +      + W   VD  I E  +   L +  + + +   V G GIA+  D
Sbjct: 189 AHRCINY--RMRSSGAIYKWEFLVDGVIVEYAVRGPLVITHWQTSLNAAVAGLGIAMGWD 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + +      LV ++ +       +Y  +P+      K + F +F+
Sbjct: 247 LTLAEPLRTGALVEVLPEYSAGFPGLYAYHPQQAHLPVKTRVFLDFL 293


>gi|304394925|ref|ZP_07376809.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304357178|gb|EFM21541.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 294

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 145/303 (47%), Gaps = 20/303 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + L VF +VA++ +F  AAE+L +++ +IS+ +  LE  + I L  R  R + LT
Sbjct: 1   MNADKNALEVFVIVAQTRNFRLAAEKLGVTRPAISQSLRRLEDRLNITLMQRTTRSVQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119
           E G +L+   +   ++L     +L E + +P G+LR+A +  + + +L G  L  F+  Y
Sbjct: 61  EAGQRLYAEVAPAINQLNRAVTDLTELATEPRGQLRLAIS-SIAERMLGGELLASFITAY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCR 178
           P +++ + + +++ DI     D  +RL + I +  +I   + T     A A+P YL    
Sbjct: 120 PQVELDITVTDEEFDIVGQGYDAGVRLGEVI-AQDMIAVPVSTAQRQVAVASPTYLAREG 178

Query: 179 EPLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            P   +EL  H  I +     L P   E        D  +  P+++    N    +++  
Sbjct: 179 TPQHPEELVNHRCIGWRKGPGLAPYRWEFAEQGCNFDVAV-NPQLTT---NDMGVMIRTA 234

Query: 236 VLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG-KLKAFRNF 289
             G GI+         YI +    L+ I+++ + P F  ++ Y  + KN   K++A  + 
Sbjct: 235 CAGGGISFGMEETFQPYIARG--ELITILDEWL-PGFAGFYLYFPSRKNLAPKMRALIDH 291

Query: 290 IFL 292
           + L
Sbjct: 292 VRL 294


>gi|21230647|ref|NP_636564.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769358|ref|YP_244120.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21112232|gb|AAM40488.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574690|gb|AAY50100.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 335

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 96/185 (51%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F     +GS    A++L +S +++S+ I+ LE  +G++L +R  R L LTE+G+   
Sbjct: 7   IRSFVSTVDAGSIAGGAKRLGVSPAAVSQNIARLEQHLGVRLLHRTTRSLALTERGALYV 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   LE  +  +      P+G+LR+A+T    +++L   L      YP ++I+L+
Sbjct: 67  EQVRQIERDLERARQLVAGPQQAPAGRLRVASTAAFARHVLAPMLPSLRQRYPRLEIELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +  + +  D ++R+   ++   L+ R +  +     AAP YL+ C  P +  EL 
Sbjct: 127 CTDRVVQHAQESVDVSLRIEAQLE-DGLVARHIANVPFVVCAAPAYLQRCGAPQTPDELK 185

Query: 188 KHNLI 192
            H+ +
Sbjct: 186 YHDCL 190


>gi|254250329|ref|ZP_04943648.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124879463|gb|EAY66819.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 316

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++  KPSG+L +  T   GQ+ +   +  +   YP + ++L 
Sbjct: 67  DRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQSYVMPAVVRYRERYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +     A+P YLK    P ++ +L
Sbjct: 127 LSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGDVGSVLCASPAYLKARGTPRTVSDL 186

Query: 187 DKHNLITF-GDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H  +     L P+    ++  N   TV+ P+ +      QVN   ++      G GI 
Sbjct: 187 AGHACLRLVTPLFPRDRWHLDGPNGRETVELPLPD-----FQVNIADALGTALRAGLGIG 241

Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ D      TVY  Y        K++ F +F+
Sbjct: 242 SLPMSAALPALASGALVRVLPDYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292


>gi|332529650|ref|ZP_08405605.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040881|gb|EGI77252.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 311

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 15/289 (5%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SF+ AA + ++  S ++R +  LE   G+KL  R   GL+ T +G++L +    V  +LE
Sbjct: 27  SFSAAAREQNVVVSVVTRGVDRLEAGYGVKLLRRSTHGLSATPEGAELAQEARAVLARLE 86

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
                L +   + +G LR+A++ ++ + L+  +L +    YP ++I+L+ D++  D+  +
Sbjct: 87  DVSASLTDQRSRVAGTLRLASSQEICEELVLPHLSDLQARYPALRIELLADDRVADLVTE 146

Query: 139 YADCAIRLRKPIQSSSL-IQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
             D A  LR  + +S L + R+L       YA+P YL+    P    EL +H  +T    
Sbjct: 147 GIDVA--LRTTVGNSELVVARELGKFQRRLYASPAYLREHGTPADPTELQQHETVTHTAQ 204

Query: 198 IPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLV 256
            P       W+        E  +   L  +S   +    V G+GI +L   +   +    
Sbjct: 205 GPVA----TWVFRKQGKRLELNVQARLAASSSALVHHALVNGAGIGMLSRPLASADVARG 260

Query: 257 RIMEDVITP--SFTVYFCYPEA---LKNTGKLKAFRNFIFLKARD-WKF 299
           R++E V+ P  S TV+  Y  A    +N  ++KA  +F+   +R  W  
Sbjct: 261 RLVE-VLEPFASGTVHTLYAVASPGRRNAARVKAVIDFLERASRGPWAL 308


>gi|330816156|ref|YP_004359861.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327368549|gb|AEA59905.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 333

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 120/295 (40%), Gaps = 9/295 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSF  A E+L + +S++SR +  LE ++  +L  R  R   LT +G   +  
Sbjct: 32  AFLAVAAEGSFAKAGERLGIGRSAVSRNVQKLEAQLDARLLLRTTRCTQLTREGQLFYEH 91

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                 ++     E++E  S  P G LRI      G+ ++   L+ F   YP+I + L+L
Sbjct: 92  CRPGIEQIAQALDEMRELRSGPPRGALRIRAASGFGRRVVAPLLRGFRERYPEIALDLLL 151

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +   D +    D A R    ++ S LI R+L+ + +   A+P Y      P  + EL  
Sbjct: 152 HDGPPDFAAGRIDVAFR-DGILEDSQLIARRLMPMRLLVCASPAYASRHGLPRELVELTA 210

Query: 189 HNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I             F     V R + E R      N     MQ  + G G+A LP Y
Sbjct: 211 HRCIGLRGAAGSVEAWTFRVEGGVRRVVPEARHG---FNDPELAMQAALDGEGLAQLPAY 267

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +  +      L+  +          Y CYP       +++ F +++    R   F
Sbjct: 268 LACEALREGRLLACLGAFADEDRGHYLCYPSRKHLPTRIRVFVDYMSEATRALDF 322


>gi|269966743|ref|ZP_06180820.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
 gi|269828666|gb|EEZ82923.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
          Length = 309

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 145/297 (48%), Gaps = 11/297 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR  SFT AA ++ ++++++S+ +  LE ++ ++L  R  R ++LTE+G +L  + 
Sbjct: 14  FAHIARHRSFTKAALEMGVTRAALSQHLKALEQQLQVRLINRTTRSMSLTEEGQRLLDIL 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 +E    EL +S ++PSG +RI+ +    + L++  L EFL  YP I+++LI+D+
Sbjct: 74  QPSLVNIEQVVNELNDSHLEPSGLIRISVSRTAARLLIEPYLGEFLSRYPKIRLELIMDD 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              +I  +  D  IRL   +    +       +      +P Y +    P + ++L+ HN
Sbjct: 134 GFSNIVAEGVDAGIRLGLSLDEHMVAIPITPPLTTAIVGSPEYFRQNGLPQTPEDLEGHN 193

Query: 191 LITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            + +       ++ ++ L + D      + EP+ + +  + Y S++Q  + G G+    D
Sbjct: 194 CLAYRFTSSGTIDHWS-LTSPDVAKRTLVFEPKGNAIFNDDY-SMLQAAMQGVGLVKHID 251

Query: 247 YIVKDNPNLVRIMEDVITP---SFTVYFCY-PEALKNTGKLKAFRNFIFLKARDWKF 299
             V+ + +  R+   V+TP    F  ++ Y P       K++   +F+  K    K 
Sbjct: 252 LWVEKHIDEGRLTR-VLTPWCKEFPGFYLYIPSREHMPKKIRVLMDFLIEKREALKL 307


>gi|271501163|ref|YP_003334188.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344718|gb|ACZ77483.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 297

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 124/282 (43%), Gaps = 8/282 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+    VF  VA  GSFT AA +L LSQS++S  +  LE  +  +L  R  R L+LT+ G
Sbjct: 5   DFSDFAVFIAVAEEGSFTRAAAKLGLSQSALSYTVRMLEQRLDTRLLSRTTRSLSLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       +  +      L     KP+G +RI T     + +L   L  FL  YPDI 
Sbjct: 65  ERLLHALKPAFEHINHEIAALSSQRGKPAGTIRITTFRHAARTVLLPALTPFLHDYPDIM 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ ++    DI     D  IR+ + +    +  +    I M    +  Y      P + 
Sbjct: 125 VEISVNEGLTDIVAGRFDAGIRMGEQVHKDMIAVKISPDIRMAVVGSASYFAARNTPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H  I++       +  + W    +    E R++   + +   +++   L SG+ L
Sbjct: 185 RELSEHRCISYRQSSGGGI--YAWEFEKEGDALEVRVNGPLIINDNEMLEDAAL-SGLGL 241

Query: 244 L---PDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
           +     ++++      L+R++ED   P    +  YP   ++T
Sbjct: 242 VYTFESHVIQHITAGRLIRVLEDWCPPVSGYHLYYPSRKQHT 283


>gi|261344751|ref|ZP_05972395.1| hypothetical protein PROVRUST_06010 [Providencia rustigianii DSM
           4541]
 gi|282567194|gb|EFB72729.1| glycine cleavage system transcriptional activator [Providencia
           rustigianii DSM 4541]
          Length = 313

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 131/296 (44%), Gaps = 18/296 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++ +       L   L  F   +P I ++
Sbjct: 69  YYLDIKEIFSSLNEATRKLQARSAK--GALTVSLSPSFAIQWLVPRLSGFNQAFPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   K    S L   +L   ++    +P  L   ++    ++
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGKG-NWSGLRTDRLYAEYLMPVCSPTLLTGEKQLKIPED 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L KH L+             +W A V + +    +  +Q     S    ++Q  V G G+
Sbjct: 186 LAKHTLL-------HDSSRRDWQAYV-KQLDIQNVVNVQQGPIFSHSAMVIQAAVHGQGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + K   D   LV    +V+      Y    E     GK+ AFR +I  +A
Sbjct: 238 ALANNVMAKNEIDAGRLVCPFSEVLVSKNAFYLVCQENQAEIGKIAAFRQWILAQA 293


>gi|152970370|ref|YP_001335479.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955219|gb|ABR77249.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 310

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 114/264 (43%), Gaps = 10/264 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D+  L++F  V  + SF+  A +  +S S ISR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   SVDFRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  +    Q  LQ+ +  P G +RI   +  GQ  +   L E    +P 
Sbjct: 66  AGRFFAASARELLGQYADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELAARHPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q  L L +  ID   D  D   R+   +  +    R   +   +  A+P Y+     P 
Sbjct: 126 LQFDLTLTDDFIDPHRDATDILFRISS-LPDAGYHARVFGSQRYYLTASPEYVSRYGSPT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S + L +H  + +G           WL     +  +  P    +  N+  +++   + G 
Sbjct: 185 SPEALHQHRTLVYG----GSQGANRWLFRQREEAWVHYPLTPLMTSNNADALLTSAIGGM 240

Query: 240 GIALLPDYIVKD---NPNLVRIME 260
           GI L PD++V     N  LV +M+
Sbjct: 241 GIVLFPDWMVSGALHNGTLVTLMD 264


>gi|120610488|ref|YP_970166.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120588952|gb|ABM32392.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 305

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GS + AAE + +S++  SR + GLE  +G +L +R  R +TLT+ G    
Sbjct: 7   MRVFVEVVDRGSVSAAAEAMDMSRAMASRYLEGLENWLGARLLHRTTRRITLTDAGQTSL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+         +  + S +  G+LR+ ++       L G + +F  L+P + I L+
Sbjct: 67  VTCREMLVLANDVMAQAGQGSTQAHGRLRLTSSSSFAMAQLTGAVVDFQALHPKVDIDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D A+RL   +    L+ R+L + +    A+P YL+    P + ++L 
Sbjct: 127 MVDRTVDLVQERIDLAVRLSNAVD-PVLVARRLASCYSVLCASPAYLERAGAPKTPEDLQ 185

Query: 188 KHNLI 192
            H  I
Sbjct: 186 VHQCI 190


>gi|77459029|ref|YP_348535.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383032|gb|ABA74545.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 308

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 123/270 (45%), Gaps = 4/270 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + V+  V   GSFT  A  L  +  ++SR +S LE  +  +L  R  R L++T+ G + 
Sbjct: 6   NMSVYVKVVEMGSFTAVANHLDSTVGNVSRAVSALENVLDARLLQRSTRRLSVTDAGRRF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   LE+ + E   +++KP G LR+     L ++L+ G +  +   +PD+ + L
Sbjct: 66  YERCIKILADLESAEAEASNAALKPRGTLRVHCVPGLARHLVTGAVLAYRNEFPDVTVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L  +  ++  D  D +I + + +  S+ + +K+   H    A+P YL+    P +  EL
Sbjct: 126 MLSQRMPNLLEDQLDVSILIARTLPDSAYVSQKIGVSHCVLAASPDYLERHGTPTTPDEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +  G  +    +++   +        P      VN   ++      G+GI LL  
Sbjct: 186 SAHQCLLLG-TVDYVRDEWQLKSKAGDATFVPTGPSFSVNDMDAMAVAIRQGAGIGLLAG 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           +   D+     LVR++ D  T    VY  Y
Sbjct: 245 FTAIDDFRSGQLVRVLPDYHTYERNVYAVY 274


>gi|16761760|ref|NP_457377.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16766286|ref|NP_461901.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29143244|ref|NP_806586.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56414931|ref|YP_152006.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161506474|ref|YP_001573586.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161615917|ref|YP_001589882.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167550145|ref|ZP_02343902.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993480|ref|ZP_02574574.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168231077|ref|ZP_02656135.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236034|ref|ZP_02661092.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168242750|ref|ZP_02667682.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261867|ref|ZP_02683840.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463862|ref|ZP_02697779.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820292|ref|ZP_02832292.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194444978|ref|YP_002042234.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451240|ref|YP_002046954.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194470143|ref|ZP_03076127.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194737180|ref|YP_002115935.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197251092|ref|YP_002147894.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197263267|ref|ZP_03163341.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197363859|ref|YP_002143496.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198245105|ref|YP_002216958.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|204928403|ref|ZP_03219603.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205353924|ref|YP_002227725.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858247|ref|YP_002244898.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213418326|ref|ZP_03351392.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213424888|ref|ZP_03357638.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213583190|ref|ZP_03365016.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213622672|ref|ZP_03375455.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213649825|ref|ZP_03379878.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|224584772|ref|YP_002638570.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238909761|ref|ZP_04653598.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289829844|ref|ZP_06547359.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25321782|pir||AH0863 regulatory protein for glycine cleavage pathway STY3122 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16421532|gb|AAL21860.1| regulator of gcv operon [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16504062|emb|CAD02808.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138877|gb|AAO70446.1| regulatory protein of glycine cleavage pathway [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56129188|gb|AAV78694.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|160867821|gb|ABX24444.1| hypothetical protein SARI_04680 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365281|gb|ABX69049.1| hypothetical protein SPAB_03711 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403641|gb|ACF63863.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194409544|gb|ACF69763.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194456507|gb|EDX45346.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194712682|gb|ACF91903.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195633577|gb|EDX51991.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197095336|emb|CAR60894.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214795|gb|ACH52192.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197241522|gb|EDY24142.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290647|gb|EDY30001.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197939621|gb|ACH76954.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|204322725|gb|EDZ07922.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205273705|emb|CAR38698.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205324797|gb|EDZ12636.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328462|gb|EDZ15226.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334595|gb|EDZ21359.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205338178|gb|EDZ24942.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205342981|gb|EDZ29745.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349161|gb|EDZ35792.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206710050|emb|CAR34405.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|224469299|gb|ACN47129.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|261248118|emb|CBG25953.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267995122|gb|ACY90007.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159542|emb|CBW19061.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914003|dbj|BAJ37977.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087407|emb|CBY97172.1| Glycine cleavage system transcriptional activator Gcv operon
           activator [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321225665|gb|EFX50719.1| Glycine cleavage system transcriptional activator GcvA [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322613384|gb|EFY10325.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322620976|gb|EFY17834.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624039|gb|EFY20873.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628221|gb|EFY25010.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633340|gb|EFY30082.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636082|gb|EFY32790.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639419|gb|EFY36107.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643718|gb|EFY40270.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648831|gb|EFY45278.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655176|gb|EFY51486.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657993|gb|EFY54261.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664095|gb|EFY60294.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667063|gb|EFY63235.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673112|gb|EFY69219.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677897|gb|EFY73960.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681072|gb|EFY77105.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685668|gb|EFY81662.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323131340|gb|ADX18770.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323194807|gb|EFZ79994.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196558|gb|EFZ81706.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323205028|gb|EFZ90011.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207770|gb|EFZ92716.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212677|gb|EFZ97494.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214839|gb|EFZ99587.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222569|gb|EGA06934.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226448|gb|EGA10656.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230672|gb|EGA14790.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234977|gb|EGA19063.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239015|gb|EGA23065.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244627|gb|EGA28633.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247242|gb|EGA31208.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251775|gb|EGA35640.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256418|gb|EGA40154.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262406|gb|EGA45962.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267498|gb|EGA50982.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269098|gb|EGA52553.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326624723|gb|EGE31068.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629038|gb|EGE35381.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989852|gb|AEF08835.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 305

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L+             +W A   R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTLL-------HDASRRDWQAYT-RQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIAL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GIALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|192360587|ref|YP_001982765.1| LysR family transcriptional regulator [Cellvibrio japonicus
           Ueda107]
 gi|190686752|gb|ACE84430.1| transcriptional regulator, LysR family [Cellvibrio japonicus
           Ueda107]
          Length = 309

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 122/263 (46%), Gaps = 18/263 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A SGSF+ AA +L L+ +++SR ++ LE  +G++LF+R  R L LTE G   
Sbjct: 6   NLESFVRSAESGSFSAAARRLALTPAAVSRNVAMLERNLGVRLFHRSTRKLALTEAGEHF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               S     L+     +     +P+G L+++     G + L   L  FL  YP I+ + 
Sbjct: 66  LASVSGNLAALQEAIAAVSVEEGEPTGVLKVSLAPSFGVSHLLPLLPTFLARYPRIRPEW 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +N+ +D+  +  D AI     +    L+ R L   H+ A A+P YL     P     +
Sbjct: 126 HFENRAVDVVAEGYDAAIGGGFDLM-PGLVARTLAPAHIIAVASPAYLAGLTPP-----V 179

Query: 187 DKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGS 239
           +   L+    ++ + +       W+    R  G+   + L+    VN   ++ +   LG 
Sbjct: 180 EPSGLVALDGIVMRSLSTGRIRTWVMRNAR--GDEVTAALRETIVVNDPAALREAARLGL 237

Query: 240 GIALL--PDYI-VKDNPNLVRIM 259
           G+ALL  PD +   ++  L+R++
Sbjct: 238 GVALLAVPDVLPCLESGELIRVL 260


>gi|288932952|ref|YP_003437011.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288887681|gb|ADC55999.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 304

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 127/275 (46%), Gaps = 6/275 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS + AA  L++  +++SR I  LE+ +G++L  R  R LTLT+ G         +   +
Sbjct: 17  GSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTDAGVDYVAAAQRILEDV 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E  + +      +P G+L I+     G+  +   + EF+  YP I+++L+L +++ D+  
Sbjct: 77  ENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPLIRVRLLLSDRNADLVS 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           D+ D A+R+   +  SS++  +L T+ + A A P  L    EP   ++L    +I     
Sbjct: 137 DHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQRPRDLAALPIIRIESP 195

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254
           +P     F      D+ I  P +  L V +  S      LG G+A L  Y   D   +  
Sbjct: 196 MPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGVARLLHYQALDGLRHGE 253

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L  ++E+V      V+  Y        KL+ F +F
Sbjct: 254 LRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDF 288


>gi|259417542|ref|ZP_05741461.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259346448|gb|EEW58262.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 292

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARLGTVSGAAEVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+    + SG+L + T++     +L   L EF  ++PD+ 
Sbjct: 63  LDLLRVAQATDDQFSQLVGRLKGQGDEVSGEL-VVTSLSSMAPMLAPALTEFQQMHPDLV 121

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I+ +  ++   +    A  A+R    P Q  +++Q   V   +  YA+  Y+        
Sbjct: 122 IRYLTGDRLFRLEYGEAHVALRAGAAPEQPDNVVQ-PFVGQRLALYASEEYVARHGMLKG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++  H  +   +   +   +  WL AT+  P       C   +  ++  +    G+GI
Sbjct: 181 QEDMVNHRFVASDNENTRAPFE-RWLRATI--PAENIVFRC---SDAVAGHKAIRAGAGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +  +     P+LV +M+     S  ++      L  T K+++F  F+   A+ W
Sbjct: 235 GFISLWEAASCPDLVMMMDPRDEWSGKIWLVTHVDLHRTNKVQSFVRFLKEHAKTW 290


>gi|226953297|ref|ZP_03823761.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226835923|gb|EEH68306.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 300

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 134/272 (49%), Gaps = 13/272 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE+L  + S +SR +S LE+++ + L  R  R L LT
Sbjct: 1   MKSSIEELLAFITIVDTGSFVAAAERLGQTASGLSRSLSRLESKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ + L   +  L  S    SG +R+ + +    +++   ++ F   YP
Sbjct: 61  QEGQQFLNHARKILNDLNAAEEALLRSDQDTSGIIRVDSAVPFILHVIAPLMQLFHQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+I+L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P
Sbjct: 121 NIEIELNSNDQVIDLLEHKTDVAFRFGE-LHDSSLHAKLVCQSRLYIVASPAYLAQRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLG 238
              Q+L  H++I F     + +    W   +D   GE  +  S ++ +S  ++ Q C+ G
Sbjct: 180 RHPQQLAMHDVIGF----TRPLYINKWPIKID---GEYFVAQSSIKASSGETVRQLCLRG 232

Query: 239 SGIALLPDY-IVKD--NPNLVRIMEDVITPSF 267
            GIA L ++ I KD     LV + ED I  S+
Sbjct: 233 LGIARLSEFEIWKDLEEGRLVALFEDQIEHSY 264


>gi|168230418|ref|ZP_02655476.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194469052|ref|ZP_03075036.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194455416|gb|EDX44255.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205334945|gb|EDZ21709.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 307

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 69  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 189 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 247

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++++ +  +   Y  YP       KL+ F ++   KA
Sbjct: 248 DVHEDLQDGRLCSVLDEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297


>gi|150376633|ref|YP_001313229.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150031180|gb|ABR63296.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 309

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 131/296 (44%), Gaps = 15/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR GSFT A ++L ++Q+++S QI  +E  +G  LF R  R + LTE 
Sbjct: 14  FPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIRLIEENIGEPLFLRRPRQIALTEV 73

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    +E +  L      +  +       L I +T       L   +  F L +P+I
Sbjct: 74  GQHLAPKVTEAFEMLHDA---VASARGNAEAALLINSTATFASQWLAREIGTFQLEHPNI 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+ ++  ID + +  D AIR         L   +L+ +      +P   +      +
Sbjct: 131 AVRLVANDAIIDFNKEAVDVAIRSGMG-DWPGLASHRLMRVEFTPMLSPALAETVGGVRT 189

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++L K  +I   D  P     F   A VD P   G P  S L   ++ +  +  V G G
Sbjct: 190 PRDLLKLRIIDPRD--PWWSLWFR-AAGVDDPDLDGRPG-SRLGAQAFEA--RAAVAGQG 243

Query: 241 IALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A+L      D+  L R+    E   +     +  YP A +N  K++AFR++I  K
Sbjct: 244 VAILMPEFYSDDVALGRLYQPFELRCSDGHDYWLVYPHARRNAPKIRAFRDWILGK 299


>gi|62181492|ref|YP_217909.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62129125|gb|AAX66828.1| regulator of gcv operon (LysR family) [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322715975|gb|EFZ07546.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 305

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 132/298 (44%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L+   D   +     +W A   R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTLLH--DAYRR-----DWQAYT-RQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIAL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GIALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|167589665|ref|ZP_02382053.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 298

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G++LF R  RGL LT  G+ 
Sbjct: 13  NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLRLFERLPRGLALTYDGAA 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S+V   L     +  +  VK    L I+TT       L   L  F   +PD+ ++
Sbjct: 73  YF---SDVQRALNAIA-DATDKLVKRRATLTISTTPSFASKWLIPRLARFTDAHPDLDVR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D +      D  D AIR  KP    SL    L  + ++A  +P  L         + 
Sbjct: 129 VIADAQLATFRHDGVDLAIRYGKPPFGKSLAAHLLFPLDIYAVCSPSLLAAP---APPRA 185

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+  G DL P+      +LA +  P+       L+ N     +   V G GIAL 
Sbjct: 186 LAGHVLLHDGHDLWPE------FLAALPEPVDVDPHKGLRFNQTSLAIDTAVAGQGIALA 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D +V+ +     LV+  E     S   Y  YP   ++   L   R+++  +A
Sbjct: 240 TDPLVERDIAAGRLVKPFEFAFPLSVGFYLVYPGERRDDDGLAVMRDWLIAQA 292


>gi|157148353|ref|YP_001455672.1| DNA-binding transcriptional activator GcvA [Citrobacter koseri ATCC
           BAA-895]
 gi|157085558|gb|ABV15236.1| hypothetical protein CKO_04171 [Citrobacter koseri ATCC BAA-895]
          Length = 305

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIQWLVPRLSSFNSTYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGDKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILTKA 292


>gi|307320020|ref|ZP_07599442.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306894397|gb|EFN25161.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 294

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 136/289 (47%), Gaps = 18/289 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT A  +L +SQ++IS Q+  LE  +G+KLF R  RGL LT++GS 
Sbjct: 9   NALRAFEASARHCSFTRAGLELRVSQTAISHQVKSLEDLLGVKLFRRLPRGLALTDEGSA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+V+ ++  T    +E +      + +  T  +G   L   L +F   +P++ ++
Sbjct: 69  LAPVMSDVFKRMCATLSRFEEGNFHEVVTVGVVGTFAIG--WLMKRLPDFHDAHPNLDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ +N  +D++ D  D AIR        +     L    +    +P      +EP+ +  
Sbjct: 127 ILSNNNRVDLAGDGLDFAIRFGDGSWHGTDAM-HLSAAQLSPVCSPQIAARLKEPVDLAR 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++          + +      W A   R +G   P +  +  ++ L++ +    GSG AL
Sbjct: 186 IE----------LLRSYRSDEW-AQWFRAVGAQPPILRGMVFDTSLALAEAAARGSGAAL 234

Query: 244 LPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP  + +      R+++  D+   +   +  + ++ + T  + AF++++
Sbjct: 235 LPITMFEHYLESGRLVQPFDITVAAGDYWLTWLKSRQFTRGMIAFKSWL 283


>gi|28869851|ref|NP_792470.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969978|ref|ZP_03398111.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301384555|ref|ZP_07232973.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302062669|ref|ZP_07254210.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302132796|ref|ZP_07258786.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28853096|gb|AAO56165.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213925303|gb|EEB58865.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 301

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 136/301 (45%), Gaps = 33/301 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++TE G +
Sbjct: 7   DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMGVVLLHRSTRQVSITEDGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++  LG+  +   L E    YP + I+
Sbjct: 67  VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGLGRRFVAPALSELAARYPKLDIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L +      A+P Y++    PLS+ E
Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNDI-APHLRARHLASNWRVLCASPAYVQQHGVPLSLAE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI------GEPRISCLQVNSYLSI------MQ 233
           L  H+ +   +               DRP       G      ++V   LS        Q
Sbjct: 186 LANHDCLVIKER--------------DRPFGIWHLNGSQGAETVKVTGSLSTNHGEIARQ 231

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
           +C+ G G+ L   + V+ +    R++   + P +     ++  +   L ++ K++    F
Sbjct: 232 WCLDGRGVLLRSLWDVRTDLAEGRLVP--VLPEYRQDADIWAVHTSPLMSSAKVRVTVEF 289

Query: 290 I 290
           +
Sbjct: 290 L 290


>gi|148548391|ref|YP_001268493.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148512449|gb|ABQ79309.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 299

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 117/247 (47%), Gaps = 7/247 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  VA++GS + AA  L L+ S++SR ++  E  +G +L  R  R LTLT +G   
Sbjct: 9   EMEIFVKVAQAGSLSAAARALGLTPSAVSRILARTEQRLGTRLLLRTTRALTLTPEGEAY 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    V   +   +  + +  V P G+LR++  +   +  +   L  F   YP + + L
Sbjct: 69  LRGARRVLADMLEVEEAITDQGV-PRGRLRVSAALGHARLTVVPLLAAFSARYPQVLVDL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  DI    AD A+R    +  SSL  R +        A+P YL+    PL  ++L
Sbjct: 128 TLSDEVADILGGQADVALRFGH-LPDSSLSARAIGETGQVVVASPDYLQRHGTPLEPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + F     + M D  W    D      ++   ++ +S  ++ Q   LG+G+A + 
Sbjct: 187 ARHNCLRFN--FRRAMPD--WPFHRDGHTFSLKVKGNIECSSGEALAQLARLGAGVARIG 242

Query: 246 DYIVKDN 252
            + V D+
Sbjct: 243 TFTVADD 249


>gi|317053392|ref|YP_004119159.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953131|gb|ADU72603.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 305

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 1/193 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V    SF  A++ L +  S++SR I+ LE ++ ++L  R  R + LT+
Sbjct: 4   ALDFNALKVFVAVVERESFVGASKVLEMPTSNVSRCIAQLEEKLNLQLIERSTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   YPD
Sbjct: 64  AGHLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSAIADFACQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  + +   ++   D  D AI + R  +  S  I R LVTI     AAP  ++    P
Sbjct: 124 LEISCVTNLSGLESLRDDLDLAIIVTRGQMDDSDYIARHLVTIPCTIVAAPSVIQRYGTP 183

Query: 181 LSIQELDKHNLIT 193
             IQ+ ++   IT
Sbjct: 184 SHIQQFEELPCIT 196


>gi|13476483|ref|NP_108053.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14027244|dbj|BAB54198.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 310

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 114/247 (46%), Gaps = 3/247 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R F  VA  GS +  A +  + QS+I+R +  LE  VG+ L  R  R +T+T +GS
Sbjct: 8   FERMRSFVRVAERGSLSAVAREFGVGQSTITRHVRELEEAVGVPLLSRTTRRVTMTAEGS 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +  + ++   +E    E + +   P+G +RI+ T   G   +   +  F   +PDI +
Sbjct: 68  RYYANSVQILRLVEQASDEARGTRGAPAGTIRISCTAAFGVLHVSRLIFAFQDRHPDIGV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  D A+RL  P+  SSL  R L        A+P YL     P    
Sbjct: 128 DLSLTDERVDLVREGVDIALRL-GPLTDSSLKLRALGQSRRLLVASPDYLAARGRPADPS 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I   ++     E         +    P    L+++  L+  Q  +   GIA  
Sbjct: 187 DLSRHEGIRMSNV--AGSETLALQGADGQRHTVPFAGRLRIDHGLAARQAMIAARGIAPA 244

Query: 245 PDYIVKD 251
             ++V D
Sbjct: 245 HRWLVDD 251


>gi|323499233|ref|ZP_08104210.1| transcriptional regulator, LysR family protein [Vibrio sinaloensis
           DSM 21326]
 gi|323315621|gb|EGA68655.1| transcriptional regulator, LysR family protein [Vibrio sinaloensis
           DSM 21326]
          Length = 289

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 90/163 (55%), Gaps = 1/163 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R    V  +GSFT AAE+L +S+S  S+ ++ +E E+G+KLF R  R L++ + G + +
Sbjct: 1   MRTVVAVIETGSFTAAAERLGISKSLTSKYVNRVEEELGVKLFNRTTRKLSVNQSGHEFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V  + +    +L  ++   +G LR+  +    + LL   + EF   YPDIQI +I
Sbjct: 61  QQAQQVLMQFDKLYSQLPANNKGAAGPLRVTASQGFAEELLSPFIPEFHHRYPDIQIDMI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           + N+ +D+     D A R  + +  S L  RK++++    YA+
Sbjct: 121 VTNQKLDLVEQGIDIAFRASE-LNDSGLNYRKILSVQSSVYAS 162


>gi|270263148|ref|ZP_06191418.1| LysR family regulatory protein [Serratia odorifera 4Rx13]
 gi|270042836|gb|EFA15930.1| LysR family regulatory protein [Serratia odorifera 4Rx13]
          Length = 298

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 133/285 (46%), Gaps = 26/285 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  SGS T AAEQL  + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKITLEELLAFTSVVDSGSITSAAEQLGQTTSGISRALSRLEKKLDTTLMRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   +E  + ++    + P+GKLR+       ++++   +  F   YP
Sbjct: 61  EEGQSFLGHARDIIRSVENAEEQMALRRLIPAGKLRVNAAAPFMEHVIVPLVAGFRQSYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  DN  ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIELELNTDNLIIDLLEKRTDIAIRI-GILRDSTIHARLLGASRLRILASPDYLERYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPR------ISCLQVNSYLSIMQ 233
            S++ L +H L+ F        E  N W      P+  P+         L  +S  ++ Q
Sbjct: 180 NSVEALREHCLLGFTQ-----PESLNLW------PLRNPQAPHFAITPTLSASSGETLRQ 228

Query: 234 YCVLGSGIALLPDYIVKDNP---NLVRIME----DVITPSFTVYF 271
             + G GI  L D++ +D+     LV+++E    DV  P   VY+
Sbjct: 229 LALRGEGIVQLADFMTRDDQRSGRLVQLLEQDTLDVRQPINAVYY 273


>gi|163801286|ref|ZP_02195185.1| LysR-family transcriptional regulatory protein [Vibrio sp. AND4]
 gi|159174775|gb|EDP59575.1| LysR-family transcriptional regulatory protein [Vibrio sp. AND4]
          Length = 297

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 135/287 (47%), Gaps = 14/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  +   GS + AAE L LS++ ++R +  LE  +  +L +R  R L+LT+ G +
Sbjct: 5   EAMNVFVTIVERGSLSAAAEHLDLSRTKVTRYLGELEKWMDTRLLHRTTRSLSLTDAGRE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              V  E+    E+      ++ V   G+LRI  +  +  + L   +  F+  +P++ I 
Sbjct: 65  TLEVARELLALEESLSGIRNQNRVSLKGQLRITASYSIVNSFLIDAITSFVEQWPNVAID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  ++ +++     D AIR+   +  S+++ ++L        A+P Y++    PL+ Q+
Sbjct: 125 IVSTDEAVNLVESRIDLAIRVTNAL-PSNVVAKQLAECRSVVCASPKYIEQKGTPLNAQD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIA 242
           L  HN ++F            W      P G+  +S    +  N+   ++   + GSGI+
Sbjct: 184 LADHNCLSF-----SYFGRSEW--AFRGPNGDESVSIKGSISANTPEVLLAAALNGSGIS 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L P   VK   D   L++++ +    +  V+  Y    + T  L+AF
Sbjct: 237 LQPFPSVKHLLDEGKLIQLLPEWHPRTLGVHAIYGTRKQVTPLLRAF 283


>gi|170735171|ref|YP_001774285.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821209|gb|ACA95790.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 316

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++  KPSG+L +  T   GQ+ +   +  +   YP + ++L 
Sbjct: 67  DRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQSYVMPAVVRYRERYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +     A+P YLK    P ++ +L
Sbjct: 127 LSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGDVGSVLCASPAYLKARGTPRTVSDL 186

Query: 187 DKHNLITF-GDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H  +     L P+    ++  N   TV+ P+ +      QVN   ++      G GI 
Sbjct: 187 AGHACLRLVTPLFPRDRWHLDGPNGRETVELPLPD-----FQVNIADALGTALRAGLGIG 241

Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ D      TVY  Y        K++ F +F+
Sbjct: 242 SLPMSAALPALASGALVRVLPDYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292


>gi|116251025|ref|YP_766863.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255673|emb|CAK06754.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 296

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 121/260 (46%), Gaps = 15/260 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +A+SG+   AA+QL +  ++ISR++S LET +G KL  R  R + LT  
Sbjct: 17  IDWDDLRHFLALAQSGTLLGAAKQLGVEHATISRRVSSLETSLGRKLVDRRGRRIMLTSD 76

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++ R  + V  +    +   + S+ +  G +RI+    L   LL   +      +P +
Sbjct: 77  GEQVARHAALVAAQTAAIEQLGRSSATELRGHVRISAPPALSSVLLAKPIAALRRDHPGV 136

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+ + +   ++   AD A+R+ +P      I  KL     H YA+  YL    E +S
Sbjct: 137 EITLVGEKRLASLNRREADIAVRMSRPEDGDYAIV-KLGETSFHLYASKTYL----ETVS 191

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             E      I + + +    +          RPI   R S L+  +         LG+G+
Sbjct: 192 PSEW---TFIGYDETMNASPQQLRLTELAAGRPIA-VRSSVLEFQA-----ATASLGAGV 242

Query: 242 ALLPDYIVKDNPNLVRIMED 261
            +LPD+ V ++  L RI  +
Sbjct: 243 VMLPDFAVLESSGLQRIATE 262


>gi|304395216|ref|ZP_07377100.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304357469|gb|EFM21832.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 300

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 24/252 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F      GSFT AAE+LH++ S++S+ +S LET +G +L  R  R L LT+ GS  ++  
Sbjct: 12  FVASVECGSFTAAAERLHVTGSAVSKSVSRLETRLGSRLLERTTRSLHLTDAGSAYYQTC 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   L   +  L    + PSG+LR+A     G+  +   L  F   +P++ + L L +
Sbjct: 72  LRILEDLAEAEAVLAAQRIIPSGRLRLAVPTTYGRLNVMPLLMPFCQQHPELALSLSLSD 131

Query: 131 KDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  +  D A+R+   P   +SL  R +    M   A+P YL     P +   L  H
Sbjct: 132 RFVDLFEEGVDVAVRIGGAPDLPASLGWRNMGREQMQFCASPAYLDREGRPENEAALLNH 191

Query: 190 NLITF----GDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQYCVLG 238
             I +    G   P       WL T +   G+P       R++   V++ L   Q  + G
Sbjct: 192 PAILYERVDGSTKP-------WLFTTED--GQPHWREVPFRLAVGDVDAQL---QAVIAG 239

Query: 239 SGIALLPDYIVK 250
            G+A +P ++++
Sbjct: 240 LGVAQMPSWLIQ 251


>gi|172063691|ref|YP_001811342.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996208|gb|ACB67126.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 300

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 135/278 (48%), Gaps = 12/278 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++  F  +A +GS T AA++LH   S +SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLDEMLAFVTIADTGSLTGAADRLHQPTSVMSRILRRLEDKLDTTLIRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   +E  + ++      P+G+LRI   +   Q+++   +  F   YP
Sbjct: 61  EEGNVFLDYARDIIASVEFAEDQIARQRETPAGRLRINAAMPFMQHVIAPMMPGFREAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+ +L   ++ ID+     D AIR+ + ++ S+L  RKL +  +   A+P YL+    P
Sbjct: 121 AIEAELHTSDEIIDLLEQRTDVAIRIGE-LRDSTLHARKLGSSRLRILASPAYLERAGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H L+ F  + P+ +   +W        G      LQ +S  +++   + G+G
Sbjct: 180 ESVDDLATHTLLGF--VQPETLN--HWPLRTAAGDGYRVQPALQASSGETLLTLALNGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVIT----PSFTVYF 271
           I  L D++    + + +LV ++ D  T    P   VY+
Sbjct: 236 IVCLADFMTGTHRRDGSLVELLVDDTTEFRQPIHAVYY 273


>gi|167585738|ref|ZP_02378126.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 305

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 120/287 (41%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L + ++++S  +  LE   G +L +R  R + LT  G+ 
Sbjct: 5   DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLEAGFGTRLLHRTTRQVQLTADGAL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +              G+L +     + + ++   L      +P +Q+ 
Sbjct: 65  LFERGRRLLAEADELDRLFHGRDRDVVGRLNVDVPSRIARRVIAPALPSLFRRHPKLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P     
Sbjct: 125 LGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFVLINCASPGYLRECGVPEHPDV 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H     G   P    +  W    D   R    P  S + VN+  + +  C+ G G+ 
Sbjct: 184 L-AHGHYAVGYAAPTTGRELPWEVCGDGTTRQFALP--SRVIVNNAETYIASCIAGMGLI 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P + V D      LV +M         V   YP     + +L AF
Sbjct: 241 QIPRFDVADLLAGGALVEVMPGHRAAPMDVSAVYPHRRHRSRRLNAF 287


>gi|220918753|ref|YP_002494057.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956607|gb|ACL66991.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 317

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 126/261 (48%), Gaps = 17/261 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  G F+ A   L  + S++++ ++ LE  +G +L  R  R + LT +G   
Sbjct: 11  EMEAFAAVAELGGFSAAGRALGKTPSALNKLVARLEARLGARLLTRTTRAVRLTAEGEAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H+    +  ++E  + E +  +  P G++R+   +  G + L   ++ FL   P + + L
Sbjct: 71  HQRALRILAEVEEAESEARGGA--PRGRVRVNANLPFGVHCLLPVVRSFLEANPGVTLDL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +D+    AD AIR+  P+++S L+ RKL    +   A+P YL     P +  +L
Sbjct: 129 VLTDEVVDLVERRADVAIRV-GPLRASGLLARKLGESPVAVVASPDYLARRGTPHTPADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIA 242
             H  I F     + ++D+ +     R  GE    P    ++     +  +  + G+G+A
Sbjct: 188 GAHERIGF--TFARTLQDWPF-----RQGGEEVRVPVRGAVRAGDGETARRLALAGAGLA 240

Query: 243 LLPDYIVKDN---PNLVRIME 260
            L  + V D+     LVR++E
Sbjct: 241 RLALFQVTDDLEAGRLVRVLE 261


>gi|254368473|ref|ZP_04984490.1| transcriptional regulator [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157121367|gb|EDO65568.1| transcriptional regulator [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 298

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 140/291 (48%), Gaps = 19/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
              FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT +G  L 
Sbjct: 12  FEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTYEGMLLF 71

Query: 68  RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                + ++++    +L ES  K PSG L+I+T+    QN+L   +KE+   +  ++I++
Sbjct: 72  NYCKTLQNEIDNIH-DLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSKVKIEV 130

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++ K  +   + AD  + +   P +  +++  K+ T      A+P Y+     P +I +
Sbjct: 131 SIEEKMPNFKSNEADIILGVNWTPPE--NIVACKIATTRYVLCASPAYINKNGSPSNISD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS-GIA 242
           L  HN I     +         L  + +    P+   S +  N+ +  ++ CVL   GIA
Sbjct: 189 LANHNYIPHKSRVTP-------LVNIKKNKLNPQTLPSNISANN-IEFIKACVLNDFGIA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +YIVK+   N  L+ +++D       +Y  YP+      K+K F N +
Sbjct: 241 QFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLV 291


>gi|116250969|ref|YP_766807.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255617|emb|CAK06698.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 321

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 12/252 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + V   V  +GS +  A +LH   +++SR+++ LE  +G++L  R  RGL +TE+G 
Sbjct: 27  FEAMSVLLAVVEAGSLSAGARRLHAPLATVSRKVADLEKHLGVRLVLRTRRGLAVTEEGR 86

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  +  +L+  + +         G L +   I  G+  L     EFL   PDI +
Sbjct: 87  AFVAASRRILEELDAAERQANGDYSALRGGLHVTAPIAFGERHLLPIALEFLKEQPDINL 146

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ + ++ ++ D A+R+   +  S+LI  ++ T+     A+P YL     P    
Sbjct: 147 RLSLVDRQLSLADEHVDVALRIGH-LADSALIATRVGTVRRVICASPDYLARRGVPRQPD 205

Query: 185 ELDKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +L +H+ I+F         +   D    A       EPR   L VN+  + +Q  + G G
Sbjct: 206 DLAQHDGISFQGFATAPEWRYRRDGAAFAV------EPRYK-LAVNTTEAAIQAALAGIG 258

Query: 241 IALLPDYIVKDN 252
           I  +  Y + D 
Sbjct: 259 IIRVLSYQISDQ 270


>gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151280349|gb|ABR88759.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 308

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 136/287 (47%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++ + GS   AA++L ++  S+S++++G+E+ + ++L  R  R ++LT +G    
Sbjct: 7   LAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTPEGEIYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +LE  +  +   ++   G L+++ T   G+  +   L  F  LYP++++QL 
Sbjct: 67  ADGTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHITPQLSAFARLYPEVEVQLH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++     D  IR  + I  + L  RK+        A+P YL+    PL  ++L 
Sbjct: 127 LTDRPVNLVEQGFDADIRFGQ-IPDARLSARKIADNRRLVCASPAYLQKHGTPLVPRDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN I   +   +    +++ + + +   + R   L  N       + + G GI +  ++
Sbjct: 186 QHNCILLRE-SDEIYGSWHFSSGIKQETVKVR-GALSANDGECATSWALDGQGIVVRSEW 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            V     +  L  ++E+   P   +Y  +P     + K +A  +F+ 
Sbjct: 244 DVAPYLRSGRLRAVLEEWQLPQADIYIVFPTKNHLSAKTRALVDFML 290


>gi|222084992|ref|YP_002543521.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722440|gb|ACM25596.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 312

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 130/293 (44%), Gaps = 19/293 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLTE 61
            DW+ LR    +AR GSF  A+ ++    +++ R++  LE + G  LF R A G +T T 
Sbjct: 22  IDWNDLRYVLALARGGSFAAASREIKTDATTVGRRLRILEEKFGAALFQRDAGGVMTPTP 81

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +      V  ++      L+ + +   GK+R+         LL     E L  +  
Sbjct: 82  AGDIVVARAEAVEAEVMALSGALEAADITALGKVRLTAPPSFISRLLIPATAELLSQHSG 141

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNC-R 178
           +Q++LI D ++ +++   AD AIRL +P  I +S ++ R++ ++    Y A     +  R
Sbjct: 142 LQLELIGDARNFNLTRREADMAIRLARPSDITNSKVVARRIASLDYAIYVAAGKQDDAER 201

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P  + E    +L       P       W+A      G    + L VN   +++Q  V G
Sbjct: 202 LPWLVYEEGMTHL-------PHA----RWIAEQAEKSGA---AALAVNDAEALLQAAVAG 247

Query: 239 SGIALLPDYIVKDNPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G ALLP  + +    L R+  +D   P   V+      L+N  +++A   ++
Sbjct: 248 LGRALLPKILAERVEGLYRVDTDDRSLPVREVWLLTHAELRNAIRIRAVAGWL 300


>gi|90419368|ref|ZP_01227278.1| putative transcriptional regulator, LysR family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336305|gb|EAS50046.1| putative transcriptional regulator, LysR family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 313

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 128/294 (43%), Gaps = 15/294 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L  F  V R G F  A   L + +S +SR+++ LE  + ++L  R  R L+LT  G
Sbjct: 3   NLDDLFYFEAVVRHGGFAAAGRALGIPKSKLSRRVAALEQRLDVQLLERSVRRLSLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +        + E  +   Q  + +P G +R+      G++ L G L  F   YP ++
Sbjct: 63  DVFYGHCRAALAEAEAAEEAAQTLTAEPRGLVRLGCPPGFGEHALAGVLPAFFAAYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS-LIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++  + ID+  +  D  IR     + +S L+ RKL  I +   A+P +L      ++
Sbjct: 123 LQLLVSLETIDLIAERVDVVIRANLAFEENSDLVARKLGPIGIVLVASPAFLA-AHSAIA 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI---GEPRISCLQVNSYLSIMQYCVLGS 239
             E D   L T      +    +      DRP+    EPR   L VN +    +  + G 
Sbjct: 182 RPE-DLAGLPTIAHQKTQDQSIWELYDGADRPVRIRHEPR---LLVNDFAVSREAAIEGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A+LP  +  D   +  LVR++ D       V+  +       G L A R  +
Sbjct: 238 GVAMLPQAVCYDALASGALVRVLPDYHAGESMVHLLF---TSRRGMLPAVRVLV 288


>gi|107028576|ref|YP_625671.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686578|ref|YP_839825.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897740|gb|ABF80698.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652293|gb|ABK12932.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 316

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++  KPSG+L +  T   GQ+ +   +  +   YP + ++L 
Sbjct: 67  DRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQSYVMPAVVRYRERYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +     A+P YLK    P ++ +L
Sbjct: 127 LSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGDVGSVLCASPAYLKARGTPRTVSDL 186

Query: 187 DKHNLITF-GDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H  +     L P+    ++  N   TV+ P+ +      QVN   ++      G GI 
Sbjct: 187 AGHACLRLVTPLFPRDRWHLDGPNGRETVELPLPD-----FQVNIADALGTALRAGLGIG 241

Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ D      TVY  Y        K++ F +F+
Sbjct: 242 SLPMSAALPALASGALVRVLPDYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292


>gi|311278243|ref|YP_003940474.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308747438|gb|ADO47190.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 305

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   E++ +L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFQDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLTSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKALKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
             +L +H L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PMDLAQHTL-----LHDASRRDWQ---TYTRQLGLTHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIAL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GIALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILSKA 292


>gi|300697902|ref|YP_003748563.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074626|emb|CBJ54181.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 316

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LE  +G++L  R  R + +T+ G
Sbjct: 3   DLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           S  +    E   +      E+ E +  KPSG+LR++  + +    L   L +FLL  P++
Sbjct: 63  SAFY-AQCEAMTQAARAAFEVAEHAGDKPSGRLRVSCPVGVAHIFLAPVLSKFLLAQPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           +++L + N+ +D+  +  D A+R+R  +  S+L+ R          A+P ++  
Sbjct: 122 RLELDVTNRRVDVIGEGYDVALRVRATLDDSNLVARTFGVSGQVLVASPSFVAE 175


>gi|292489721|ref|YP_003532611.1| HTH-type transcriptional regulator ptxR [Erwinia amylovora
           CFBP1430]
 gi|292898071|ref|YP_003537440.1| LysR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291197919|emb|CBJ45020.1| LysR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291555158|emb|CBA23345.1| HTH-type transcriptional regulator ptxR [Erwinia amylovora
           CFBP1430]
          Length = 301

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 120/255 (47%), Gaps = 7/255 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  + S+T AA+ L L++SS+S++IS LE  +G KL  R  R + +TE G   +  
Sbjct: 12  IFAKVVETLSYTEAAKALGLAKSSVSKEISALEVRLGAKLLQRTTRRIQVTEVGMTYYHY 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              + H++++    +++   +P G LR+   +  G   +   L  F+     + + L L 
Sbjct: 72  CYRILHEVKSADRFIRQFHEEPGGSLRVVAPVTFGCQCIVPALNRFIASNIHVSVDLDLT 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ ++   D  D AI + + +       R L+ I    YAAP YL N     S  +L +H
Sbjct: 132 DRPLNFEDDRIDIAIAITRDLPDHRHY-RPLMDIAWGLYAAPDYLLNRTPVTSPDDLQRH 190

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I F    P       +     +   E R S  + N+ ++++   V  +GIA LP YI 
Sbjct: 191 EFILFRG--PAHTISLPFRKEKQKKDIEVR-SRFRANNSIALLNSAVAETGIAYLPSYIA 247

Query: 250 K---DNPNLVRIMED 261
               ++  LVR++ +
Sbjct: 248 GEAVESGKLVRLLPE 262


>gi|206577835|ref|YP_002238067.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206566893|gb|ACI08669.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 299

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 19/287 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +W  +RVF  V R GSF  AA  L +S  ++ R+I  LE E    LF R   GL LT+
Sbjct: 10  GMEWGDVRVFLAVMRKGSFGEAARSLGVSHPTVGRRIKALEAEAQQALFRRTKEGLVLTD 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++ ++   V +     +  L  +  +  G LRI+        +L   L E    +P 
Sbjct: 70  AGDRVLKLAEAVENSALAMERRLAGNHERLEGILRISCAEWFANYVLAPVLSELTRRHPA 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I  ++I   + +++S   AD A R+  P     ++QR+L+TI    Y  P          
Sbjct: 130 IVPEIIASYRLLNLSRRDADIAFRI-VPFTEPDIVQRRLMTIPYALYGTP---------- 178

Query: 182 SIQELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +  + +H+    G ++    +    D  WL  +DR     R+      S     Q C  
Sbjct: 179 DMAGIAQHDPAAVGLILMNTAQSHFSDVAWL--LDRFPQSRRV--FTSTSRAVQAQMCQR 234

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G GIA+LP  +      L  I      PS  ++  Y   L++  +L+
Sbjct: 235 GMGIAVLPRPLGDAITGLQPISMPEPPPSKNIWVGYHSDLRHMDRLR 281


>gi|190574039|ref|YP_001971884.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011961|emb|CAQ45583.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 305

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 117/260 (45%), Gaps = 20/260 (7%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           FD+   + VF  V   GSFT  A  L  + S +SR ++ LE  +G +L  R  R + LT+
Sbjct: 5   FDYLGDVEVFLAVVEHGSFTAGAVALSTTPSVLSRAVTRLEARLGRQLLQRTTRRVGLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G          +  L+  + ++       +G++R++     G   L   L  F   YP 
Sbjct: 65  AGRLYLEQVRTAFGLLDDAERDVLAQDGALAGRVRLSVPTTYGHYRLPPVLARFAQQYPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L + N+++D+  +  D AIRL + +  S L+ RKL    +   A+P YL+    P 
Sbjct: 125 VQVELNITNRNVDLVAEGFDLAIRLGQ-LPDSGLVGRKLEDAPLVLVASPEYLQRRGTPQ 183

Query: 182 SIQELDKHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           ++ +L +H  + F     G L P        D +WL         PR S    +  L ++
Sbjct: 184 TLDDLQQHLCLPFVMPRTGRLAPWIFRDDGRDVDWL---------PRSSIETSDDVLGVV 234

Query: 233 QYCVLGSGIALLPDYIVKDN 252
                G GI    ++IV++ 
Sbjct: 235 SLAEQGIGICQSYEFIVRER 254


>gi|159186669|ref|NP_396483.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141729|gb|AAK90924.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 317

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 120/249 (48%), Gaps = 6/249 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + V   V  +GS +  A +LH   +++SR+++ LE  +G +L  R  RGLTLT++G 
Sbjct: 23  FDAMSVLLAVVDAGSLSAGARRLHAPLATVSRKVADLEKHLGARLVLRTRRGLTLTDEGR 82

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  +   L+  + E+  +     G L +   I  G+  +     EFL  + +I +
Sbjct: 83  NYVAASRRILEALDVAEEEVSGAHGALRGGLHMTAPIAFGERHVLPIALEFLREHQEIDL 142

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-PLSI 183
           +L L ++ I ++ ++ D A+R+   +  S+LI  ++  +     A+P YL  CR  PL  
Sbjct: 143 RLTLADRQISLADEHVDVALRIGH-LADSALIATRVGAVRRVVCASPDYLA-CRGVPLQP 200

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ I+F         +  +   V     EPR +   VN+  + ++  V G GI  
Sbjct: 201 DDLARHDGISFQGF--ATAPEVRYRRDVTAFNVEPR-ARFAVNTTEAAIRAAVSGIGIIR 257

Query: 244 LPDYIVKDN 252
           +  Y V D 
Sbjct: 258 VLSYQVADQ 266


>gi|115358807|ref|YP_775945.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284095|gb|ABI89611.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 306

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 16/249 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD LR F  V R GS + AA  L +  S+++R+I  LE+ +GI+LF R  RG   T++G 
Sbjct: 3   WDDLRYFLAVMRGGSLSAAARALQVQHSTVARRIDALESALGIRLFDRLPRGWPPTDEGL 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    + V   +       Q ++    G +R++ +     + L   L      +P ++I
Sbjct: 63  HLAEHAARVEADVHAFARAAQGAAAL-DGVVRVSASPVFASHFLAPRLARAQRAWPALRI 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+ +    ++    AD A+RL +P +   L  R+L T+     A+P   +   EP    
Sbjct: 122 DLMGEMHAANLYAREADLAVRLSRPSE-PGLAARRLGTMRFALCASP---ERAAEP---- 173

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             D    + + D + + M    WL          R      N   ++ + CV G+GIALL
Sbjct: 174 -PDTWAFLGYDDALAQ-MPQQQWLER----FAAGRRFAFVANDLAALHRACVAGAGIALL 227

Query: 245 PDYIVKDNP 253
           P ++V D P
Sbjct: 228 PRFLV-DAP 235


>gi|300715148|ref|YP_003739951.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299060984|emb|CAX58091.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 303

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 13/290 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F +VA   SF  AA++L LS S++S  +  LE ++ ++L +R  R ++ TE G
Sbjct: 6   DLSALQAFVLVATRRSFRQAADELGLSPSTLSHMLRALEEKMAVRLLHRTTRSVSTTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      V   LE+    ++    +P+G LRI  +    + LLQ  +  FL  YP I 
Sbjct: 66  EQLLNQLKPVLQGLESALSSVEAFRQQPTGTLRINASESAARQLLQRVVPLFLQRYPAIS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++ + + IDI  +  D  +RL + +    +       +   A A+P Y+    EP + 
Sbjct: 126 LDVVTEGRLIDIVSEQFDAGVRLLEDVPQDMVAVPFGGDLRFIAVASPAYVAKSGEPATP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIM-QYCVLGS 239
            +L  H  I F   +P   + + W  +   V+R I    +    +  +L +M +    G 
Sbjct: 186 DDLLTHQCIRF--RLPSG-KLYRWEFSRRGVERHI---EVKGTLMLDHLELMVESAAQGL 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GIA +P  + +    +  L  ++E+   PS  +   YP        L AF
Sbjct: 240 GIAYVPSSVAEPWLQSGKLQIVLEEWSPPSPGLALYYPGHRHVPAVLSAF 289


>gi|251789480|ref|YP_003004201.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538101|gb|ACT06722.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 297

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 134/290 (46%), Gaps = 16/290 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V   G+ + AA QL  S  +++R ++ LE  +G +L  R  R +  T  G +
Sbjct: 5   DELLIFTTVVSQGNLSAAARQLRRSAPAVTRAVAALEKRLGTRLLERTTRKIAPTPAGLR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +    +    E  ES ++  G LR+   +  G+  +   +  FL  +PDIQI+
Sbjct: 65  LAERARILLADYQDAVQESTESQIR--GMLRLTAPVQFGRRHVTPLVMAFLSQHPDIQIE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L++ + D+     D A+R+   ++ SS++ R++ ++     A+P YL     P+   +
Sbjct: 123 LLLNDHNQDLIEQGLDMAVRIGD-LKDSSMVARQVGSVSRMLAASPTYLAARGTPVQPGD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV---LGSGIA 242
           L  H++I  G L+P     F+   T+ +    PR+    V +       CV    G GI 
Sbjct: 182 LAHHDVIA-GSLLPVVEWRFDTHGTMVKVPISPRLITNDVEA------QCVAARAGYGIV 234

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L  Y ++D+    +LV ++ +       V    P       +++AF  F
Sbjct: 235 RLLSYQLEDDFRHGSLVHLLPEWEPAPLPVQLVAPHRELMPRRVRAFWEF 284


>gi|221212147|ref|ZP_03585125.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168232|gb|EEE00701.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 304

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 127/287 (44%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQI  LE ++G+ LF R  R + LT+ G +  
Sbjct: 22  LLVFEAAARHESYTRAADELSLSQSAISRQIQTLEDQLGVPLFRREGRSVKLTDVGRRYF 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 82  AEVGGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 140

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               +ID  +D  D AI +        L   +L    + A A+P    +     +     
Sbjct: 141 SRIGNIDFHVDDLDAAISVGTG-DWPGLHAHRLYNEFLIAIASPDAPPDANGERAPAWAA 199

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           +  L+          E   W A       + RI    ++ S+L  +Q    G GI L+P 
Sbjct: 200 RQTLLGVTSNQHAWAE---WFAHYRLDHRQMRIGPSFELTSHL--IQAVRAGMGIGLVPK 254

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +V+D  + N +  + D IT   + Y  YP   ++   L AFR+++ 
Sbjct: 255 VLVEDELSRNELVSIGDAITSRRSYYLVYPPENESLPSLAAFRDWLM 301


>gi|322831540|ref|YP_004211567.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166741|gb|ADW72440.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 305

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 129/292 (44%), Gaps = 22/292 (7%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS---- 64
           +VF  +   GS   AAE L++S++ ++R +S +E   G +L +R  R L+LT+ G     
Sbjct: 8   QVFVAIVERGSMVSAAESLNMSRAMVTRYLSEMEKWSGARLLHRSTRKLSLTDAGENTLA 67

Query: 65  ---KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              K+  V +E+    +T    L+       G LR++ +   GQ  +   + EFL  +P 
Sbjct: 68  RCRKMLSVAAEMSSVADTGDEALR-------GLLRLSCSQSFGQGAVVIAVSEFLRRHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L+++ I++  D  D A+R+   +   +LI R L        A+P YL     P 
Sbjct: 121 VSIDLQLESRAINLVEDRIDLALRITNDLD-PNLIARPLALCPSVVCASPAYLAAQGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +T+     K +  F   A     +  P    L  N  L ++   V G+GI
Sbjct: 180 HPQDLAVHNCLTY-TWFGKSLWQF---ARQGEQVAIPVSGNLSANESLVLLTGAVEGAGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + P Y       +  LV ++         +Y  Y    +    L+A  +F+
Sbjct: 236 VMQPYYSAAPLIASGQLVALLSGWQPQEMGIYAIYMSRRQMPAALRALLDFL 287


>gi|162146089|ref|YP_001600547.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161784663|emb|CAP54201.1| putative transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 289

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 129/266 (48%), Gaps = 22/266 (8%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ S++S+ +S LE  +G +LF R  R L LT +G+  +  +  +   L   + +   +S
Sbjct: 1   MTPSAVSKLVSRLERRLGTRLFNRSTRQLQLTPEGAAFYDRSVRILADLAEAE-QCASAS 59

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             P G++RI   + +G+  L   +      YPD+ + ++L +  +D+  D  D AIR   
Sbjct: 60  ALPHGRVRINVNVPMGRRFLLPLVPALSARYPDLVLDIVLTDTVVDLMEDRTDIAIR-HG 118

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT-----FGDLIPKCME 203
           P++SS L+ RKL  + M   AAP YL     P +  +L +H  I        D  P+ ++
Sbjct: 119 PLKSSRLMARKLGRMRMRLVAAPAYLARYGMPGTPADLRRHRRIGSSYWRMHDGWPQ-LD 177

Query: 204 DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIME 260
           D   +     P+  P I  +Q +   +++Q  + G G+A L  + V ++     LV ++E
Sbjct: 178 DGGPV-----PVLPPGI--VQASDGDAVLQLAIAGMGLAYLAAFQVDEHIAAGKLVPVLE 230

Query: 261 DVITPSFT-VYFCYPEALKNTGKLKA 285
              +P+    +  Y   L + GKL A
Sbjct: 231 AFHSPALVDTHAVY---LGHHGKLPA 253


>gi|153010332|ref|YP_001371546.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562220|gb|ABS15717.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 309

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 130/287 (45%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H
Sbjct: 8   MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 68  ERVLAILSNIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     A+P Y+     P +I++L 
Sbjct: 128 LTDEMVDIVGDGYDLAIRIAE-LSDSTLVARRLAPVRRILVASPGYIAERGTPQTIEDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP+G      LQ NS   + +  + G GIA    +
Sbjct: 187 DHICLAPHNNDPWRLEGPKG-PIVIRPVGP-----LQTNSSEMVREAVLAGLGIAQRSTW 240

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 241 DIGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|300694249|ref|YP_003750222.1| transcription regulator protein lysr [Ralstonia solanacearum PSI07]
 gi|299076286|emb|CBJ35599.1| putative transcription regulator protein LysR [Ralstonia
           solanacearum PSI07]
          Length = 306

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 139/293 (47%), Gaps = 19/293 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW+ LR    VARSGS   AA  L +S ++  R+I  LE  VG  LF R   G  LTE
Sbjct: 3   NLDWNDLRYLLAVARSGSAAGAARALGVSHATALRRIQALEQVVGSPLFDRLQTGYALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +   +       L   + E++  + + +G +R  TT  LG  L+   L  F   YP 
Sbjct: 63  AGRRFVEMGEAFERTLMEARREIEGQATELAGTIRFTTTDSLGYGLMPDILAAFRERYPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++ + N  +D+    AD  +R+       S + R+L  +    YAAP YL+  RE  
Sbjct: 123 ITVEMKVTNARLDLEKREADVMLRVTDE-PPPSWVGRRLSRLDAAVYAAPAYLEG-RETG 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++ LD         L+P        +A   R  IG  R++    +S+L + +    G G
Sbjct: 181 ALEALDW--------LMPNSPLGQGAVAQWLRSRIGGARVAA-SADSFLVLRRLAESGLG 231

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVY---FCYPEALKNTGKLKAFRNFI 290
             +LP ++ +    LV  +EDV   S +V+     +P+ L++ G++ AF  ++
Sbjct: 232 ATVLPKFLAQQR-GLV-WLEDV-PESLSVHLWLLTHPD-LRHAGRVHAFMEYV 280


>gi|264679741|ref|YP_003279650.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210256|gb|ACY34354.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 314

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 133/282 (47%), Gaps = 15/282 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V    SF  AA QL L+ S++SR +  LET  G++L +R  R L+LTE G+++
Sbjct: 10  EMLVFAKVVELRSFAAAARQLDLTTSAVSRSVGRLETHWGVQLLHRTTRSLSLTELGAEV 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   S++              S  P G +R+      G+  L   L      +P++++ +
Sbjct: 70  YAACSQLAQTASDIHAIAGHYSGVPRGTVRLTAPTIFGEIWLSAQLPALRRQWPELEVAV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN-CREPLSIQ 184
            L ++  D++    D AIRL +P Q    ++ R+L  +   A A+P YL+   + P   Q
Sbjct: 130 SLSDQMQDLAQQGLDLAIRLTRPEQLPPHMVARELRQVRYIAVASPAYLRGLIKPPEHPQ 189

Query: 185 ELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           EL + + +      +GD   +         + +  + E  + S L ++S   I+   +  
Sbjct: 190 ELGREHGVACITLGYGDFQSRLQWVHGQTRSPEAAVTEVAVHSPLSMDSSTGIINLALQH 249

Query: 239 SGIALLPDYIVK---DNPNLVRIMED-VITPSF---TVYFCY 273
            GI L+ D+  +    +  LV+++ D ++T ++   T Y  Y
Sbjct: 250 QGIGLVADFAAQAVLSSGALVQVLPDWLLTGNYAPRTAYALY 291


>gi|150397563|ref|YP_001328030.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029078|gb|ABR61195.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 299

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 96/185 (51%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA +G F+ AA +L+L++S++ + +S LE  +G++LF R  R   LTE+G   +  
Sbjct: 9   VFVEVADAGGFSAAAARLNLTRSAVGKTVSRLEQRLGVRLFNRTTRTQNLTEEGQLFYES 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +   +++T +  L+    +  G+LRI+  +  G+  +   L++ L  +P ++  L  +
Sbjct: 69  CQKALGEIKTAESLLESGRREIRGRLRISMPVLFGRQCVAPLLRDLLQAHPHLEFDLSFN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ ID+  +  D A+R       + L+ R +    M   A+P YL+    P  + EL  H
Sbjct: 129 DRVIDLLDEGFDLAVRNAPLGNGAGLMMRTVAEQRMTVCASPAYLEARGMPKKVAELAAH 188

Query: 190 NLITF 194
             + +
Sbjct: 189 EGVVY 193


>gi|312882549|ref|ZP_07742290.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369949|gb|EFP97460.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 312

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 97/189 (51%), Gaps = 2/189 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  SF+ AAE L++S S IS++++ LE  VG+KL  R  R  TLT+ G K 
Sbjct: 8   QMVVFSALVKCRSFSRAAESLNVSVSHISKKLAALEQSVGVKLIERSTRNFTLTQAGLKF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  +++   +E    E+     + SG  +IA T  +G   +  +L +F   YPDI+I++
Sbjct: 68  SKHCTDLVSNIEQGYAEINSLRDEVSGVFKIACTPHMGTKFVIPSLSDFKQQYPDIEIEV 127

Query: 127 IL-DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L  ++++D+     D  I +   I    + QR      + A A+P YL   + P    E
Sbjct: 128 YLTTDQNLDLLETGIDLWITISGSIAEGYVAQRFADNTFL-AVASPAYLMKNKAPSHPDE 186

Query: 186 LDKHNLITF 194
           L  HN + +
Sbjct: 187 LQDHNCLIY 195


>gi|332143224|ref|YP_004428962.1| putative transcriptional regulator, LysR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553246|gb|AEA99964.1| putative transcriptional regulator, LysR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 294

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 135/275 (49%), Gaps = 18/275 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V  SGS + AA +LH++ S+IS+Q+  LE ++G+ LF R+ R L+LTE G   +
Sbjct: 9   LQVFISVTDSGSMSVAARELHMTVSAISQQLRKLEHDIGLSLFNRNTRSLSLTEAGRIYY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + + ++    E  Q +++     P+GK+ I      G  LL   LK+    +P I I L 
Sbjct: 69  QTSKQMLETAELAQQKIESLQDDPTGKINIIAPEGFGGGLLSEPLKKLCEEFPKITISLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI-QE 185
           + ++  DI    AD  +    P+  ++    +L T   +   +A H L N  E LS   +
Sbjct: 129 ITDEPKDIIASSADLVLCF-APVSDTNFSSLELATWKRILCVSARHPLAN--EALSSPAQ 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGIAL 243
           L+ H  IT      + +ED+      +   GE  +    + VNS  ++++    G G A+
Sbjct: 186 LNSHAYITH-----RHIEDYVMQHDSE---GEYELDTQRIDVNSMQTLIKLTQDGVGYAV 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           LP+  V+    +  + ++  +   P +TVY   P+
Sbjct: 238 LPEPEVRHLLKSGEMKQLFTEWELPGYTVYAVTPK 272


>gi|200388865|ref|ZP_03215477.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605963|gb|EDZ04508.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 307

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 69  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 189 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 247

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++++ +  +   Y  YP       KL+ F ++   KA
Sbjct: 248 DVHEDLQDGRLCSVLDEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297


>gi|162457103|ref|YP_001619470.1| Mau operon transcriptional activator [Sorangium cellulosum 'So ce
           56']
 gi|161167685|emb|CAN98990.1| Mau operon transcriptional activator [Sorangium cellulosum 'So ce
           56']
          Length = 297

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 134/305 (43%), Gaps = 24/305 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD  R+F  VA +GS + AA +L ++Q ++SR+++ LE  +G  LF R   G  LT
Sbjct: 1   MDISWDDARLFLAVAEAGSLSAAARKLQMTQPTVSRRLAELEALLGEPLFDRGVAGTALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLL 117
             G+ L     E   ++     EL  ++ +   P+G +R+     +    L      F  
Sbjct: 61  AYGAGL----VEPAQRMADWAAELTRAAERRHAPTGVVRVTAPPGIAHGFLVPFAAAFWR 116

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P I++ ++   + +D++   AD A+RL  P+   S+     V I + A+A+  Y    
Sbjct: 117 CAPAIELHVVSTVRPLDLTRREADLALRLGVPVDEDSVAS---VDIELRAFASEQYAAR- 172

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               +  + D   L   G   P  ++D +  + + R I   R S    + YL  ++ C L
Sbjct: 173 ----AAGKADPAELAWIGWAPP--LDDLSPNSALGRLIPGWRPS-FASDDYLVQIRACEL 225

Query: 238 GSGIALL----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G G  +L    P +    +P LV +  D+     ++    P + +   +++A    +   
Sbjct: 226 GLGAMMLAREHPHF--PRHPPLVELKVDLPPARRSLVLLCPRSARAIPRVRAVLEPLAES 283

Query: 294 ARDWK 298
            R W+
Sbjct: 284 LRAWR 288


>gi|148549724|ref|YP_001269826.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513782|gb|ABQ80642.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 298

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 7/248 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L+VF  V   GS + AAEQ+  + S++SR +S LE ++G  L  R  R + LTE+G  
Sbjct: 6   EELQVFVAVIDCGSISAAAEQMGQTPSAVSRTLSRLEGKLGTTLVNRTTRRMDLTEEGRY 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               +  +  +++  +  L  +   P+G+LRI        + +   + EF   YP I+++
Sbjct: 66  FLERSRLILQQMDEMEERLSMNRQTPTGRLRINAAAPFMLHAILPWIGEFRRQYPGIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D+  ID+     D AIR+ + +  SSL  R L    +   A+P YL+    P  ++E
Sbjct: 126 LNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARSLGCSPVQVLASPAYLEQHGTPRQVEE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+ F    P+ +  +    A  DR    P    L  +S  ++ Q  + G GI  L
Sbjct: 185 LANHCLLGFSQ--PESLNHWPLRHAQGDRWSIRP---ALVASSGETLRQLALAGEGIVSL 239

Query: 245 PDYIVKDN 252
             ++  ++
Sbjct: 240 SHFMTHED 247


>gi|325520600|gb|EGC99670.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 303

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 3/200 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VAR GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT +G+  +
Sbjct: 7   MRIFARVARLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTAEGATYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +   +E+   P G +R+          +   L  F   +PD+++ + 
Sbjct: 67  ERCERLLADLDDAETLFEEAGASPRGVIRVDLPERFALTRVIPALPAFHARFPDLRVVMS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P S  +L 
Sbjct: 127 TTDRFVDLVADGIDCAVRV-GALSDTSLVARRVGEMAQINCASPAYLARHGTPRSPDDLP 185

Query: 188 KHNLITFGDLIPKCMEDFNW 207
            H  +  G    +   + +W
Sbjct: 186 DH--VAVGYFSSRTGRELDW 203


>gi|298717322|ref|YP_003729964.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1]
 gi|298361511|gb|ADI78292.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1]
          Length = 300

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 24/252 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F      GSFT AAE+LH++ S++S+ +S LET +G +L  R  R L LT+ GS  ++  
Sbjct: 12  FVASVECGSFTAAAERLHVTGSAVSKSVSRLETRLGSRLLERTTRSLNLTDAGSAYYQTC 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             V   L   +  L      PSG+LR+A     G+  +   L  F    P++ + L L +
Sbjct: 72  LRVLEDLAEAEAVLAAQRTIPSGRLRLAVPTTFGRLNVMPVLMPFCQQNPELALSLSLSD 131

Query: 131 KDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  +  D A+R+   P   +SL  R +    M   A+P YL     P +   L  H
Sbjct: 132 RFVDLFEEGVDVAVRIGGAPDLPASLGWRNMGREKMQFCASPAYLDREGRPENEAALLNH 191

Query: 190 NLITF----GDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQYCVLG 238
             I +    G   P       WL T +   G+P       R++   V++ L   Q  + G
Sbjct: 192 PAILYERVDGTTKP-------WLFTTED--GQPHWRDVPYRLALGDVDAQL---QAVIAG 239

Query: 239 SGIALLPDYIVK 250
            G+A +P ++++
Sbjct: 240 LGVAQMPSWLIQ 251


>gi|194426165|ref|ZP_03058720.1| glycine cleavage system transcriptional activator [Escherichia coli
           B171]
 gi|194415473|gb|EDX31740.1| glycine cleavage system transcriptional activator [Escherichia coli
           B171]
 gi|323159875|gb|EFZ45845.1| glycine cleavage system transcriptional activator [Escherichia coli
           E128010]
          Length = 305

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAALGKIAAFRQWILAKA 292


>gi|182678391|ref|YP_001832537.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634274|gb|ACB95048.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 310

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 123/268 (45%), Gaps = 13/268 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++R F  VA  GS +  A +  + QS+++R +  LE  VG+ L  R  R +TLT++GS+
Sbjct: 9   ERIRTFVRVAERGSLSAVAREQEVGQSTVTRHLRELEEAVGVPLLSRTTRRVTLTDEGSR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  + ++   +E    E + +   P+G +RI+ T   G   +   +  F   YP+I + 
Sbjct: 69  YYANSVQILRLVEQAGDEARGTRGAPAGTIRISCTAAFGVLHVSRMIFAFQDRYPNIGVD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D A+RL  P+  SS+  R L        AAP YL     P   Q+
Sbjct: 129 LSLTDERVDLVREGVDIALRL-GPLTDSSMKLRSLGQSRRLLVAAPSYLAARGTPAVPQD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241
           L  H  I    +      D   L     P GE    P     +++  L+  +  V G GI
Sbjct: 188 LSAHEGIRMSHV---AGSDTLILQG---PGGERHAVPFGGRFRIDHGLAAREAFVAGRGI 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTV 269
                ++V D     R+ E  I P +++
Sbjct: 242 GPAHRWLVDDLLQTSRLQE--ILPDYSL 267


>gi|167582943|ref|ZP_02375817.1| LysR family transcriptional regulator [Burkholderia thailandensis
           TXDOH]
          Length = 320

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 2/190 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E    ++ P G++RI + +  G++ L   + EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHGAI-PQGRVRINSHVPFGKHHLMPLVPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +       D +D AIR    +  S L+ R+L    M    +P YL+    P +  
Sbjct: 126 DIVLSDAAAGPLDDRSDIAIR-SGSLDDSRLVMRRLGGSRMIVVGSPAYLELNGMPATPD 184

Query: 185 ELDKHNLITF 194
           +LD+HN I  
Sbjct: 185 DLDRHNCIGL 194


>gi|148252724|ref|YP_001237309.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146404897|gb|ABQ33403.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 300

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 120/274 (43%), Gaps = 17/274 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  LR+F  +AR G+   AA +L LSQ ++ R+++ LE  V   LF R A G  LT +
Sbjct: 17  MEWSDLRIFLAIAREGTLGAAARRLGLSQPTMGRRLAALEAAVSQTLFQRTAEGFVLTHE 76

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ +      +  +    +  L  +  +  G LRI+++   G+ +L   L EF  L+P +
Sbjct: 77  GTAVLAHAERMEEEALAFERRLAGAQAQLDGFLRISSSDWFGRLMLTPVLAEFGRLHPRV 136

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA---APHYLKNCRE 179
            ++L+ D +   +    AD   R+R       +I R+L+ I    Y     P  ++   +
Sbjct: 137 CVELLTDARLYSLPRREADLVFRIRA-FDEPEVISRRLLHIPYAVYGPLDGPQAVEGDGQ 195

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            + +  +D      F D     M D  WLA   + + +  ++    N  +  M     G+
Sbjct: 196 GIRVVTMD----TAFAD-----MPDARWLA---KRLPKAEVAMRSNNRDVQAM-LSAQGA 242

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           G+A+LP  +    P L  +      P    Y  Y
Sbjct: 243 GLAVLPRPLGDATPGLRPVDIGEQPPGRDTYVGY 276


>gi|134292737|ref|YP_001116473.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135894|gb|ABO57008.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 317

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 93/184 (50%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  SGSF  AA +   ++S++++ ++ LE  +G +L  R  R L LT++G   +   
Sbjct: 11  FVDVVESGSFAAAALRAGKTRSAVAKIVARLEQRLGARLLRRTTRQLGLTDEGLIYYEQC 70

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  T+  L     +P+G++RI+  +  G+  +   ++  +  YP +++ L   +
Sbjct: 71  RRLLAELGETEAALDAGRREPAGRVRISVPVLFGRQCVAPVVRRLVERYPKLEVDLSFSD 130

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D+  D  D A+R+ +   +S+L+ RKL    M   AAP YL     P  + EL  H 
Sbjct: 131 RIADLVNDGFDVAVRIGELADTSALVGRKLGVQRMGICAAPAYLSRHGRPSGLDELASHV 190

Query: 191 LITF 194
            I +
Sbjct: 191 GIAY 194


>gi|302187868|ref|ZP_07264541.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae 642]
          Length = 210

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L+ F  V  SGS + AAE++  + S +SR +S LE ++   L  R  R + LTE+G  
Sbjct: 6   DELQAFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLTEEGKF 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++E+ +  L  S   P+G+LRI        + +  ++ EF   YPDI+++
Sbjct: 66  FLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHSIVPHVAEFRQRYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D+  ID+     D AIR+   +  S+L  R L +  ++  A+P YL+    P + ++
Sbjct: 126 LNSDDWFIDLLEQSTDVAIRI-GALSDSTLHARSLGSCLLNIVASPAYLQRHGRPKTAED 184

Query: 186 LDKHNLITF 194
           L +H L+ F
Sbjct: 185 LAQHVLLGF 193


>gi|299531945|ref|ZP_07045345.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298720120|gb|EFI61077.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 303

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 13/255 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D ++L  F  V   G F  A   L L +S +SR+++ LE  +G +L  R  R   +TE G
Sbjct: 5   DLNELYYFAQVVEHGGFAPAGRALGLPKSKLSRRVALLEERLGAQLLLRSTRSFAVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++    +  + E  +  +     +P GK+R++  + L  + +   L EF+  YP ++
Sbjct: 65  KRYYQHCRAMLTEAEAAEESVALVHSEPCGKVRMSCPVALLASRVGRMLGEFMRQYPRVE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+   N+ +D+  +  D A+R+R  P+Q S L+ R L        AAP  L+   +P  
Sbjct: 125 LQVDETNRRVDVIGEGLDLALRVRPPPLQDSDLVLRTLAERRQCLVAAPELLQRLGQPGG 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             +L     +  G L     E   W+     A       +PR   L   S L++    +L
Sbjct: 185 PMDLSAWPSLDMGGL----QETHRWVLHGPEAVRAEVRHQPR---LVTQSMLALRDAALL 237

Query: 238 GSGIALLPDYIVKDN 252
           G+G+  LP   V+++
Sbjct: 238 GAGVVQLPSMFVRED 252


>gi|291458971|ref|ZP_06598361.1| transcriptional regulatory protein [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418225|gb|EFE91944.1| transcriptional regulatory protein [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 322

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 151/294 (51%), Gaps = 29/294 (9%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+FY VA++G+ + AA++L++SQ +IS+ I  LE  +  KLF R++RG+TLT++G  L+R
Sbjct: 24  RIFYEVAKNGNISRAAKRLYISQPAISKSIVKLEEGLDTKLFKRNSRGVTLTDEGEVLYR 83

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E +  +   ++EL+       G LR+  +  + + +L   L++F+  +P+I++ ++ 
Sbjct: 84  HIEEAFGAIGEAELELRRMKDLNIGHLRLGASTTMCRYVLLPYLRKFIKRFPNIRVSIVT 143

Query: 129 DNKDIDISMDYA---DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-----EP 180
            +    +S+  A   D  I      +   L       IH    A P YL+N R     EP
Sbjct: 144 QDSGRTLSLLEARKLDLGITAEPKGKHPGLCLCSPRRIHDIFVATPQYLENLREISEGEP 203

Query: 181 LSIQE-----LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
              +E     LD+HN+        + +++  +  ++ R   EP+   L+V++   ++++ 
Sbjct: 204 DIFREANILLLDEHNMSR------RHVDE--YFKSIQR---EPQ-QVLEVSTMDLLIEFA 251

Query: 236 VLGSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +G G++ ++ +++ ++  +  L  +  +   PS  + F Y EA   +  L AF
Sbjct: 252 KVGIGVSCVIKEFVAEELRSSQLSELPLEREIPSRNIGFIYSEA-NRSKSLDAF 304


>gi|239833522|ref|ZP_04681850.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239821585|gb|EEQ93154.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 309

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 130/287 (45%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H
Sbjct: 8   MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYH 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 68  ERVLAILSNIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     A+P Y+     P +I++L 
Sbjct: 128 LTDEMVDIVGDGYDLAIRIAE-LSDSTLVARRLAPVRRILVASPGYIAERGTPQTIEDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP+G      LQ NS   + +  + G GIA    +
Sbjct: 187 DHICLAPHNNDPWRLEGPKG-PIVIRPVGP-----LQTNSSEMVREAVLAGLGIAQRSTW 240

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 241 DIGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|170691921|ref|ZP_02883085.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143205|gb|EDT11369.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 350

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 127/291 (43%), Gaps = 12/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  VAR  SFT AA +L+++Q+++S QI  LE E+GI+LF+R    L LT  G  
Sbjct: 35  NGLKVFERVARHMSFTKAAAELNVTQTAVSHQIRRLEDELGIRLFHRFKERLELTASGQV 94

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +  S  + +L  +  +L E S K +  L I+T        L   L  F L +PDI I+
Sbjct: 95  YLQGVSLAFEQLRFSTEQLLEGSNKST--LTISTLATFASKWLLPRLGSFRLKHPDIDIR 152

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L      I      AD AIR     +   L   +L+   +    +P  L       S+  
Sbjct: 153 LSASTDLIHFVAGGADAAIRYGSG-EWKGLRVDRLMDDEIFPVCSPKLLTGSHPLTSVDN 211

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    +      D++ WL     P      + L  +  L  +Q  V G G+ + 
Sbjct: 212 LAHHTLLQVSGVTSN---DWSIWLDAAKLPTNLRGGARLTFDLALMAVQAAVEGHGVCIG 268

Query: 245 PDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
               V+D+    R++    + VIT     Y   P  L N  K+ A R ++ 
Sbjct: 269 RRAYVEDDLRAGRLIAPFGKSVITDR-AFYLVSPHDLANCAKVVALRTWLM 318


>gi|251791013|ref|YP_003005734.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247539634|gb|ACT08255.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 300

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 127/277 (45%), Gaps = 15/277 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  + SF+ AAE+L L ++++S+ +  LE  +G++L  R  R + +T++G   +
Sbjct: 7   MRVFVRIVETESFSRAAEKLGLPRATVSQTLKRLELRLGVRLLQRTTRQVQVTDEGLLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++  +++ T         +PSG++RI     L + ++  +L  F   YP I + L 
Sbjct: 67  QRCVQLLAEIDETDALFSHQRQQPSGRVRIDMPHSLARQVVIPSLPAFYRRYPQISLVLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  I++  +  DC +R  + ++  SL+ R L ++     A+  Y      P S++ L 
Sbjct: 127 ANDAAINVLREGVDCVLRAWR-VEDDSLVARALPSLPQVTCASAAYCAEFGVPDSLEALT 185

Query: 188 KHNLITFGDL-----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H ++++  L      P        L T   P        +++N   + +  C  G GI 
Sbjct: 186 SHRMVSYFSLRTSQRYPLEFMQQGQLITRSLP------GLVEINGADAYIAACQAGMGII 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
             P Y +     +  LV I+  +  P   +Y  YP  
Sbjct: 240 QAPRYGLASLLASGELVEILPQLPPPDMPLYVMYPSG 276


>gi|157368947|ref|YP_001476936.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320711|gb|ABV39808.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 307

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 137/293 (46%), Gaps = 14/293 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    ++ +F  V   G+F+ AA++L ++ S++S+ I  LE E+GI+L  R  R L+LT
Sbjct: 1   MSNILKRMAIFSKVVDCGAFSTAAKELGITTSAVSQHIRLLENELGIQLLLRSTRSLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     + H  E  Q  +     + +G+LR+AT+ +   + L   L+ FL  +P
Sbjct: 61  EAGLCFYEDCVLMIHAAERGQQRIAALRGELAGELRVATSTEFATHYLVPALQSFLDEHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L + ++ ID+     D AIR    +  SS +  +L        A+P YL N   P
Sbjct: 121 RITLRLEIHDEKIDLINQRIDLAIR-GGVMADSSYVSTRLARFREVLCASPAYLANHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + Q L  H  +TF    P     F  L   D      R++  L  N+ +++ +  + G 
Sbjct: 180 ETPQALTHHQWVTF---TPLGNPQFVRLLHPDGDEHRLRMTGRLFTNNGMAMKELALAGK 236

Query: 240 GIALLPDYIVK-----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           GI  + ++ V      +   LV ++ +   P  + Y   P   +++  LK  R
Sbjct: 237 GI--IRNFFVNVEKELNRGELVEVLPEWRLPDISCYAIMPR--RDSQPLKVRR 285


>gi|262041564|ref|ZP_06014761.1| glycine cleavage system transcriptional activator [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259041125|gb|EEW42199.1| glycine cleavage system transcriptional activator [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 305

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 131/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   E++ +L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YFQDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIQWLVPRLTSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGDKALKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
             +L +H L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PADLAQHTL-----LHDASRRDWQ---TYTRQLGLSHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +   +   LV +  DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCLFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|317049776|ref|YP_004117424.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951393|gb|ADU70868.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 305

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 110/238 (46%), Gaps = 4/238 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSFT AA QLHLS SSIS+ ++ LE E+ +KL  R  R + LTE G   +
Sbjct: 7   MSIFAKVVELGSFTAAARQLHLSVSSISQIVAKLEDELQVKLLNRSTRSIGLTEAGRIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +      +L   +  P G LRI ++  + QN+L     + L  YP + + L+
Sbjct: 67  QGCRRMLAEAMQVHEQLYAFNNTPIGILRIGSSSTMAQNVLADMTSDMLREYPGLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  +  D  IR+ + +Q S+L  R+L  + M   AA  +L     P    E+D
Sbjct: 127 TGIPAPDLIANGLDLVIRVGE-LQDSNLFSRRLGAMPMVVCAAKSFLAQHGTPEKPGEID 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             + + +        E       V R   + R      N  L+++++   G GIA +P
Sbjct: 186 NFSWLEYSVRPDNTFELIAPEGLVTRLTPQGRFV---TNDSLTLIRWLKAGCGIAYVP 240


>gi|189348073|ref|YP_001941269.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189338211|dbj|BAG47279.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 295

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 127/287 (44%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQI  LE ++G+ LF R  R + LT+ G +  
Sbjct: 13  LLVFEAAARHESYTRAADELSLSQSAISRQIQTLEDQLGVPLFRREGRSVKLTDVGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 73  AEVGGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               +ID  +D  D AI +        L   +L    + A A+P    +     +     
Sbjct: 132 SRIGNIDFHVDDLDAAIAVGTG-DWPGLHAHRLYNEFLIAIASPDAPPDANGERAPAWAA 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           +  L+          E   W A       + RI    ++ S+L  +Q    G GI L+P 
Sbjct: 191 RQTLLGVTSNQHAWAE---WFAHYRLDHRQMRIGPSFELTSHL--IQAVRAGMGIGLVPK 245

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +V+D  + N +  + D IT   + Y  YP   ++   L AFR+++ 
Sbjct: 246 VLVEDELSRNELVSIGDAITSRRSYYLVYPPENESLPSLAAFRDWLM 292


>gi|119474998|ref|ZP_01615351.1| putative transcriptional regulatory protein (LysR family) [marine
           gamma proteobacterium HTCC2143]
 gi|119451201|gb|EAW32434.1| putative transcriptional regulatory protein (LysR family) [marine
           gamma proteobacterium HTCC2143]
          Length = 302

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 20/270 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA +GSFT AA    +  SSISR+I+ LE  +G  L  R  R + LTE G +  
Sbjct: 7   LRYFSKVAETGSFTIAANTFSVPASSISRRIADLEKNLGATLLKRSTRSVHLTEIGQQYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +LE +   ++    KP G+L I+T +  G+ L+   L EF LL+P I + + 
Sbjct: 67  AQVKSILTQLEQSDETVRSYQAKPEGRLHISTLVGFGERLVLPLLDEFKLLHPQIVLDVS 126

Query: 128 LDNKDIDISMDYADCAIR----LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L ++   +  D  D AIR      + +Q+  L+  + + +     A+  YL     P + 
Sbjct: 127 LSDELQSLERDEVDIAIRGGYAPNERVQAIRLMDNEFIPV-----ASRRYLDRRGTPRNA 181

Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            EL +H+ + +    G     C  D  W       +    ++      +L   +  + G 
Sbjct: 182 FELRQHDGLFYRTPHGPTTWLCNTDGQW-----HDVSGTAVAISNNGKWLG--EQTIAGL 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTV 269
           GI + P + + ++     + E    P+ +V
Sbjct: 235 GIMMAPRWSINEHIKSGELQELTFNPALSV 264


>gi|170739561|ref|YP_001768216.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168193835|gb|ACA15782.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 284

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 120/270 (44%), Gaps = 11/270 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W  LR+F  +AR+G+    A  +  +Q ++ R++  LE  +G  LF R A G  LT++G
Sbjct: 3   EWSDLRIFLAIARAGTLGAGARAVGSTQPTMGRRLRALEAAIGHALFQRTADGFVLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +  +    + +L       +G LR++++   G+ LL   L  F   +PD++
Sbjct: 63  EVLLAHAERMEEEALAIERQLAGRPGTLAGSLRLSSSDWFGRTLLAPALATFGHHHPDVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+ D +   +    AD   R+ +      +I R+L+T+    Y A    +    P++ 
Sbjct: 123 IELLTDARLYSLPRREADLVFRITR-FDEPEVISRRLLTVRYGVYGA----RGTTLPVA- 176

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +      IT  D     M D  WL    R +   R++  + N+     Q C  G+G+A+
Sbjct: 177 GDGSGTRTITM-DAAFAEMPDAVWL---RRMLPNARVA-FRSNNREVQAQLCREGAGVAV 231

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           LP  +    P LV +      P    +  Y
Sbjct: 232 LPRPLGDATPGLVALDLGEAPPCRDTFVGY 261


>gi|163858194|ref|YP_001632492.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261922|emb|CAP44224.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 302

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 129/283 (45%), Gaps = 12/283 (4%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SFT  A+ L  S +++SR IS LE ++G+KL  R  R ++ T  G   ++    +  +LE
Sbjct: 10  SFTKTADALETSNATVSRIISKLEADLGVKLLERTTRRVSPTPDGLAFYQRCKLILDQLE 69

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
             + E+      P G LR+   +  G+  +   L  F   + ++ I + L ++  D++ D
Sbjct: 70  EAKNEVTALRDTPRGTLRVVLPVSYGKLWIMPLLNSFAKRFAELTISVTLSDRLDDLTED 129

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D A+ + +  + + L+ RKL    +   AAP YL     P   Q+L +HN +    L 
Sbjct: 130 NFDVALSIGETTE-ARLVARKLRQSRIVTAAAPGYLAEWGTPSVPQDLAQHNCL----LY 184

Query: 199 PKCMEDFNWLAT-VDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPDYIV---KD 251
            +  +   WL   VD       ++    L V++  ++M     G GI   PDY+V     
Sbjct: 185 VRPGKRLKWLWDFVDASQAHHSVAVHGNLLVDNGEALMDAAAQGVGIIQAPDYVVLPQLQ 244

Query: 252 NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              LV ++ D       ++  YP + +   +++   + +F+ A
Sbjct: 245 KGALVEVLGDYRPAGPAIWVLYPPSRQRASRVQMLLDELFVMA 287


>gi|162147423|ref|YP_001601884.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786000|emb|CAP55582.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 298

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 1/186 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D++R+   + R G  + AA  L L+ S +S +++ LE  +G +L  R  R  TLTE G
Sbjct: 3   DADEMRIVVEIVRQGGLSAAARHLGLAPSVVSDRLARLEQRLGTRLLVRTTRRQTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    +  +  ++E+   P G LRI   +  G+  L   +  F+  +PDI+
Sbjct: 63  RIYLDEATAILAATDAMETRVRETVNAPGGMLRITAPMPFGRVRLAPFVAGFISRHPDIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L+++ +DI  +  D AIR   P+  ++L  R+L+       A+P YL     P + 
Sbjct: 123 IHLTLEDRMVDIVGEGYDIAIRA-APVVDTALTGRRLMESRRVLVASPAYLSRHGRPETP 181

Query: 184 QELDKH 189
            +L +H
Sbjct: 182 ADLARH 187


>gi|170721732|ref|YP_001749420.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759735|gb|ACA73051.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 283

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 127/290 (43%), Gaps = 20/290 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F     +GS + AA+QL +  ++++R+I+ LE  + +KL  R  R   LTEQ
Sbjct: 2   FDWEDLRHFCAFISTGSLSAAAKQLGVDHATVARRIAALEAALNLKLVDRRPRAYVLTEQ 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++     ++       +        +  G++ +A    L  +L+   L      YP +
Sbjct: 62  GRRVGDYAEQMTQASFALEHFASAGQQQVEGQVVLAAPPALLGSLIARRLATLCNRYPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+       ++   AD ++ L +P +  +L+   L  +    YAAP YL++   P  
Sbjct: 122 HLKLVGSKSRASLARREADISVALARPSE-PTLVASLLGYLDYRLYAAPGYLRSTSTPRY 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           I            D          WL   T  +P        +Q N      Q    G G
Sbjct: 181 IGY----------DQSQAKSAQQQWLLAQTHHQPF------VVQSNDLRIQAQAAAGGIG 224

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP ++ +++  L  I E+  T S  ++    E ++NT ++KA  +F+
Sbjct: 225 IACLPAFMAQEH-GLQAIGEETQTMSIELWLAVHEDVRNTPRIKAVTDFL 273


>gi|77361937|ref|YP_341511.1| LysR family transcriptional regulator [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876848|emb|CAI89065.1| putative transcriptional regulatory protein (LysR family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 303

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 136/303 (44%), Gaps = 26/303 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSFT AA   ++  SS+SR+++ LE  +G  L  R  R + LTE G   +
Sbjct: 7   IRYFSKVVETGSFTKAASTFNVPPSSLSRRVADLEKSLGATLLKRSTRLVKLTEVGQIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE +   ++     P G+LRI++ +  G+ +L   L EF  LYP+I + + 
Sbjct: 67  NDIQQILSQLEQSNETVRSYQTTPMGRLRISSMVGFGEQILLPLLDEFSALYPEIVLDVS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++   +  D  D AIR         L  R L+       A+P YLK    P +  EL 
Sbjct: 127 LTDQLSTLGRDDVDIAIRGGYAPNERVLAIR-LMDNGFIPVASPCYLKKHGTPNNAMELK 185

Query: 188 KHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI-- 241
           +HN + F    G     C  D  W       +  P ++     S+L+  +    G GI  
Sbjct: 186 QHNGLYFKAPTGPTPWLCNMDGQW-----HDVSGPAVAISNSGSWLA--KKACNGEGILM 238

Query: 242 ----ALLPDYIVKDNPNLVRI---MEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               AL P YI  D+  L ++    E  IT   +  VY  Y +      K+KA  +F+  
Sbjct: 239 STRWALAP-YI--DSGKLQQLHFEHELAITQNANMAVYLLYQKQRYLVPKVKAAVDFLVQ 295

Query: 293 KAR 295
           K +
Sbjct: 296 KIK 298


>gi|283834984|ref|ZP_06354725.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291069266|gb|EFE07375.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 308

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 141/296 (47%), Gaps = 26/296 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +   G  + AA QL++S S++S+ ++ +E  +G  L  R  R +TLT+ G  L 
Sbjct: 10  LEFFTKIVDCGGLSEAAAQLNVSPSAVSKSLAAMEDTLGTTLIKRTTRSITLTDAGQYLF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++  + + T          P G+LRI  +I  G + L   + ++   +PD+ + + 
Sbjct: 70  NRANKLLKEFDETLNTTSGYYHSPQGELRITCSIAFGYSRLVNLVDKYRAQFPDVNLYID 129

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L++  ++++    D A+R+   P Q+ ++  RKLV +     A+P YL     P    +L
Sbjct: 130 LNDNFVNLNETDFDIALRISSAPPQNYAM--RKLVPVRWAYCASPGYLAKKGMPQRRSDL 187

Query: 187 DKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             H+ + +  L P  K  ++ + L  +   +       +Q NS L +++  +   G+A L
Sbjct: 188 VNHDCLVYPGLTPVLKVADEQDRLHQLKLHMP------IQANSSLVLLKSVLEDQGVAYL 241

Query: 245 PDYIVKDNPNLVRIMEDVITP----------SFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y++ D+     I ++ ITP          +  +Y  Y  +  +  K+++F +F+
Sbjct: 242 PTYLIGDH-----IQKEEITPLMLDGTITCETHALYALYFPSKYSNPKVRSFIDFL 292


>gi|254451179|ref|ZP_05064616.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198265585|gb|EDY89855.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 291

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 5/170 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF+ AA  L+++ ++I + +  LE      L  R  RG+++T +G KL 
Sbjct: 12  LRAFESAARHRSFSSAARDLNVTHAAIGQHVRALEDHFSQSLMQRQGRGMSVTAEGRKLA 71

Query: 68  RVTSEVYHKLETTQIE-LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              S+ +  +     + L +S  +P   +R+A T  L  N L   +  F  +YPDI+++L
Sbjct: 72  DALSDAFGLIGVASNDLLDQSKTRP---IRVALTPSLATNWLMPRIGAFWDMYPDIELEL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           +   K +D+  D  D A+R  K   + + + + +   H+ A AAP+YLK+
Sbjct: 129 LPAGKLVDLRRDNVDVALRYGKGGWTGAKVTKLMAAGHV-AVAAPNYLKD 177


>gi|325529472|gb|EGD06383.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 324

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 139/296 (46%), Gaps = 23/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSF+  A+++H+S S+++R+++ +E  +G+ L +R    +TLTE G+   
Sbjct: 16  MRAFVRVVETGSFSAVAKEMHVSTSTVARRVTAIEEALGVPLLHRSTHSVTLTEAGNIYL 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+ + 
Sbjct: 76  ERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLVAPFLARYPTIQLDVR 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D  I   +    + ++ R L        A P YL  C  P S  +L 
Sbjct: 136 LTDNHNDLVAGGFDLDIHEGENYLDNLVVHR-LSRNDSILCATPGYLDRCGRPASPDDLT 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGIA 242
           +HN + +  + P+   D  W   VD   G+ R S L   + ++     +++    G GIA
Sbjct: 195 QHNCLRY--VHPEG--DPRW-ELVD---GDARHSLLPAGNLVTDHSELLLEATCAGLGIA 246

Query: 243 LLPDYIVKDNPNLVRI--------MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               ++V+D     R+        + + +T  F +Y  Y    +++ KL+  ++F+
Sbjct: 247 EFEIWLVRDLLASGRLEAVLPRYRLHNKLTGEF-IYIAYLANRRSSAKLRVLKDFL 301


>gi|309778866|ref|ZP_07673637.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308922390|gb|EFP68016.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 315

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LET +G++L  R  R + +T+ G
Sbjct: 3   DLNDLVLFASVVTHGSFSGAARALGIPKSRVSRRVADLETRLGVRLLQRSTRAVHVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           S       E   +      E+ E +  KPSG+LR++  + +    +   L +FL   PD+
Sbjct: 63  SAFF-THCESMTQAARAAFEVAEHAGEKPSGRLRVSCPVGVAHVFIAPVLSKFLRAQPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           +++L + N+ +D+  D  D A+R+R  +  S+L+ R          A+P ++  
Sbjct: 122 RLELDVTNRRVDVIGDGYDVALRVRSTLDDSNLVVRSFGVSDQVLVASPSFVAE 175


>gi|302188432|ref|ZP_07265105.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae 642]
          Length = 315

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILASVEEAEAEASDAHARPAGQLKMHSMPGVGQHYVIDAIARYRRNHPDVAFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K         +L
Sbjct: 126 TMTHRVPDLLEEGYDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAHKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+        WL   D P G+  +    S L VNS  ++      G GI 
Sbjct: 186 LNHACLR---LVSPVFPLDKWL--FDGPEGQEMVTINSSPLLVNSADAMKTAISSGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y   +   N  LVR++ D  +    +Y  YP            R ++  K R W
Sbjct: 241 ILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPS-----------RQYLDAKIRTW 287


>gi|167588715|ref|ZP_02381103.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 327

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 26/288 (9%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  SGS + AA QL+ +Q +ISR++  LE  +G++L  R    + LT 
Sbjct: 26  GYRFELMETFVRIVESGSLSAAAAQLNTTQPTISRRLQALERSLGVRLLQRTTHTMRLTV 85

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   E+       + +L+ +  +P G LR+A     GQ    G L  FL  YP 
Sbjct: 86  DGERCFKRAKELLASWAAFEADLRGAQEEPEGLLRVAVPHAFGQERFVGPLARFLRDYPR 145

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC---R 178
           + ++ +L ++  D      DCAI++ +P     ++  +L  +     AAP  L       
Sbjct: 146 VSVEWLLQDEVRDFIGSGIDCAIQVGEPTD-PGVVAIRLSKVPRFVVAAPSVLNGAPVPA 204

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSI 231
           EP ++  L   +L T+           N LA      GE       PRIS    N Y ++
Sbjct: 205 EPDALAALPWLSLSTYYR---------NELALTHAVTGETRRIAIRPRIST--ANLY-AL 252

Query: 232 MQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
               +LG+G  +   +++ D+     LV +          VY  YP A
Sbjct: 253 RSAALLGAGACVGSSWLLADDLAHGRLVHLAPQWEAAPLPVYLTYPYA 300


>gi|301382895|ref|ZP_07231313.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
          Length = 215

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 3/193 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++T+ G  L+  
Sbjct: 11  AFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDDGQVLYER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V   L+  +  L      PSG+LR++  + LG+  +  +++  L  +P + + +   
Sbjct: 71  CVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIERCLKDWPSLSVDITFS 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    +P +  +L +H
Sbjct: 131 DRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHPQPQTPDDLSEH 190

Query: 190 NLITF---GDLIP 199
             + F   G L+P
Sbjct: 191 QCLHFVSGGRLLP 203


>gi|294650415|ref|ZP_06727777.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823686|gb|EFF82527.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 328

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 128/300 (42%), Gaps = 30/300 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G+KL  R  R   LT+ G+   
Sbjct: 23  MHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGVKLLQRSTRQHALTDIGATYA 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   +E  + E   ++ KP G+LRI +    G   +   + EF   YPD+ ++  
Sbjct: 83  ERCRQVLSIIEEAEAEATGTAAKPKGRLRIQSMASFGHYYVAPVMAEFCQTYPDLTVEYR 142

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+     D ++ L + +  S  + R++ +I     A+P YL+    P S  EL 
Sbjct: 143 TSQNAPDLLAKGIDVSLYLTESLTDSRFVSRRIGSIFSVLCASPTYLQKHGIPQSPDELH 202

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-------LQVNSYLSIMQYCVLGSG 240
            H  +   +  P     ++        +GE   S        L  ++   ++       G
Sbjct: 203 DHACLRLVN--PSITPQWHL-------VGENSCSYQIDISGQLIADTPELLLDMVQQDMG 253

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IALLP + V D     +L  I+    +P   VY   P            R+FI  K R W
Sbjct: 254 IALLPMFAVIDAVRAGHLCHILPAWRSPYIGVYTLLPS-----------RHFIDAKTRAW 302


>gi|188533894|ref|YP_001907691.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188028936|emb|CAO96802.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 303

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 1/193 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D+  L++F  V    SF  A++ L +  S++SR +S LE ++ ++L  R  R + LT 
Sbjct: 4   ALDFATLKIFVAVVERESFVGASKALEMPTSNVSRCVSQLEKKLNLQLIERSTRHMKLTP 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   YPD
Sbjct: 64  SGQLLYTRAKPLLEMLEQTETELTLRQIQLKGPLRICIPNEIGPALLSSAIADFACKYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  I +   ++   D  D AI + R  +     I R LVTI     AAP  ++    P
Sbjct: 124 VEISCITNLAGLESLRDDLDLAIIVTRGQMDDCDCIARHLVTIPCTIVAAPSVIQRYGTP 183

Query: 181 LSIQELDKHNLIT 193
             IQ+ +    IT
Sbjct: 184 SHIQQFEDLPCIT 196


>gi|170703122|ref|ZP_02893939.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170131970|gb|EDT00481.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 299

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 119/285 (41%), Gaps = 6/285 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 3   IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEVAFGQTLFTRSPSGLLPT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 63  EAALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPMLTQLRRDHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P Q  +L+ R++  I +  +A   YL     P
Sbjct: 123 GLVIELVPTDRIQDVLNREADIAVRMAPPAQ-DALVARRVGEIDIGLHARDDYLARNGTP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H LI F  + P     F   A    P+ +     L+ +S L+ +     G G
Sbjct: 182 SATSELAHHALIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           I    + + K +  LVR++ D  T     +    E L+ + +  A
Sbjct: 237 IGFCQNGLAKRDARLVRVLPDGPTMKLETWVVMHEDLRTSPRCHA 281


>gi|291301408|ref|YP_003512686.1| LysR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570628|gb|ADD43593.1| transcriptional regulator, LysR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 310

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 134/310 (43%), Gaps = 32/310 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   W  L VF  +AR+GSFT AA+ L  +QS+ISR ++ LE+E+   LF+R ARG+ LT
Sbjct: 1   METAW--LEVFRAIARTGSFTAAAKDLGYTQSAISRHVAALESEMDAVLFHRLARGVRLT 58

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      V  +L   + ++ +     +G++R+ +   +G  L+   +  F   +P
Sbjct: 59  EPGRFLLGHAEAVLARLNEAKKDIGDVRRLAAGRVRVGSFATVGVTLVPQAIARFTAAHP 118

Query: 121 DIQIQLILD---NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           D+ +  + D        ++ D  D A+    P Q ++L    L              K C
Sbjct: 119 DVTVTHLDDLTRQLAPRVARDELDVAVLNGYPPQIAALPPLSL-------------RKLC 165

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-----------EPRISCLQVN 226
            EP+S+     H L     +    + D NW+A    P              PRI+ +   
Sbjct: 166 DEPMSVALPAGHRLADRRRVRLTELADENWIAGNPTPEDTLISAALRQGFAPRIAYV-AR 224

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKD-NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLK 284
            + +   +   G G+ L+P        P++  + ++   TP   +Y      ++    ++
Sbjct: 225 EWTAKQGFVAAGLGVTLIPALAAASIRPDIALVPVDSATTPVRGIYAATAPEIEPAPAVR 284

Query: 285 AFRNFIFLKA 294
           AF + +  +A
Sbjct: 285 AFVDVLCAQA 294


>gi|153010770|ref|YP_001371984.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562658|gb|ABS16155.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 298

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 114/249 (45%), Gaps = 15/249 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +RVF  V    SFT AAE L + +S+++  I  LE  +G +LF R  R +  T  G 
Sbjct: 4   FDAMRVFTRVLERRSFTLAAEDLGIPRSTVTDAIKQLERRLGTQLFLRTTRHVNPTLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   E+   +E  +     S   P G LR+     L ++ L   L  FL  YPDI++
Sbjct: 64  AYYQRCIEIIASIEDAEGGF--SGAMPRGLLRVEVQGTLARHFLLPELPAFLEKYPDIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D   +  DC +R+   +Q S +I R++  +     A+P YL    EP    
Sbjct: 122 YMTEGDRFVDPVREGIDCVLRV-GLLQDSDMIARRVAMLDEVTVASPSYLARFGEPQHPD 180

Query: 185 EL-DKHNLITF---GDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +L D H +I F   G +    +E      L TV  P      + + VN+  S      LG
Sbjct: 181 QLTDGHQMIGFRASGSIARMPLEFMVDGKLRTVTIP------APVSVNAAESYTAAASLG 234

Query: 239 SGIALLPDY 247
            GI  +P Y
Sbjct: 235 LGIIQIPRY 243


>gi|15889589|ref|NP_355270.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157479|gb|AAK88055.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 309

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 132/301 (43%), Gaps = 29/301 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR  SFT A E+L ++Q+++S Q+  LE  +G  LF R AR + LTE 
Sbjct: 7   FPLNALRVFDAAARHLSFTKAGEELGMTQTAVSYQVKLLEENIGEPLFIRKARQVQLTEA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL    +E +H L      ++++S      L I +T       L  +L  F L +P I
Sbjct: 67  GQKLAPKVAEAFHSLREAVDNVRDTS---DTTLTIHSTATFASRWLSRHLGAFQLEHPSI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            ++L   +  ID S    D AIR      K +    L+ R + T  +H   A   +    
Sbjct: 124 AVRLDTSSALIDFSQSDCDVAIRWSRDDGKGLAYHQLL-RGVYTPMLHPSLA-ESIGGLH 181

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EP---RISCLQVNSYLSIMQ 233
            P   ++L +  +I  GD+         W +   R +G   P   R    ++N       
Sbjct: 182 RP---EDLLRLRIIDPGDI---------WWSQWFREVGVENPGLDRYPRSRLNVQAFEAA 229

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +   G+A+L   +  D   L R+    E + +     +  YPE  +N  K+K FR++I
Sbjct: 230 AAIANQGVAMLTPELYADEIALGRLYQPFEHLSSEGKNYWLVYPENRRNIRKIKLFRDWI 289

Query: 291 F 291
            
Sbjct: 290 L 290


>gi|332994769|gb|AEF04824.1| transcriptional Regulator [Alteromonas sp. SN2]
          Length = 296

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 8/235 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA    F+ AA+QL  S S ISRQ++ LE  VG  L  R  R + LTE G+  ++  
Sbjct: 10  FVAVAERKGFSAAAKQLGCSTSHISRQVARLEERVGCVLLARSTRQVNLTENGALYYQHA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            ++   L+    ++    V   G LR+++     ++ +   L +F L +P++ + +  ++
Sbjct: 70  KDLLIGLQQANEQVSLQQVTLDGVLRVSSAGGFAEHAVAPALMQFALAHPELTVDMDFNS 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + ++   D  D  IR  + +  SSLI RKL+   M A A   YL    EP    EL KH+
Sbjct: 130 RMVNFVEDDVDFVIRYGE-LADSSLIARKLIERPMMAVATRDYLSQFGEPSHPSELKKHS 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +   + + K  E+   L  + +  G  R      N+  +++  C  G GI  +P
Sbjct: 189 CVISNNDVWKFSENGK-LENI-KVKGRWR-----SNNANAVLAACEQGLGIGYMP 236


>gi|302186626|ref|ZP_07263299.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 306

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E+  G +L +R  R L LT  G     
Sbjct: 16  RVFIAINERGSLIAAAEALDISRAMVTRYLAQMESWAGARLLHRTTRKLGLTAPGQVTLL 75

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +  +L  YP     L++
Sbjct: 76  RCQQLIELADAVPLAADTHVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSADLLI 135

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P+  QEL  
Sbjct: 136 GNEAVDLVSERIDLAIRITNQLD-PNVIARPLGLCASVVCASPAYLAVHGTPIRPQELLA 194

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E  +    +  P+G      L  N  + +++  V G+GI+L P + 
Sbjct: 195 HNCLTYSYFGKSLWEFIHQQLPLSVPVG----GNLSANDSVVLLEAAVAGAGISLQPVHS 250

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  L+ +M +    +  ++  Y      +  L+ F  F+
Sbjct: 251 AAPLMASGKLIALMPEYQPRALGIHAIYTSRHHQSATLRTFLAFL 295


>gi|323530265|ref|YP_004232417.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323387267|gb|ADX59357.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 306

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 9/295 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +   V  +GS + AA  L +  +++SR++  LE  +  +L +R  R L+LTE GS 
Sbjct: 5   EAMSILVAVVDAGSLSAAARHLDMPLATVSRKVGELEAHLKTRLLHRTTRKLSLTEAGSS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++   +         P G+L +   I  G+  +   + +FL  YP+I I 
Sbjct: 65  YVAACRRILEEIGEAERAATGEYAAPRGELVVTAPIAFGRLHVTPVIADFLAQYPEIDIN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++ + +  ++AD AIR+ + +  S+L+ +++ T+      +P YL     P     
Sbjct: 125 LMLTDRVVHLMDEHADVAIRIGQ-LPDSTLVAKQVGTVRRVICGSPAYLDAHGVPERPAA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           LD H  ITF  L  + M  +++  +    +  P  S   VN+  + +   +LG G+  + 
Sbjct: 184 LDTHRCITFEAL--ESMRAWSF-GSGKSEVSVPVRSRFAVNTADAAIAAAILGVGLIRVL 240

Query: 246 DYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKAR 295
            Y V D    N +R ++E   +    V   +        KL+AF +F    L+AR
Sbjct: 241 SYQVADAVRANELRVVLEAFESAPLPVNLVHAGQTPLPLKLRAFLDFATPRLRAR 295


>gi|332530805|ref|ZP_08406731.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332039717|gb|EGI76117.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 315

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 137/302 (45%), Gaps = 18/302 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR+I+ LE+ + ++L  R  R L+LT+ G
Sbjct: 3   DLNDMLYFAEVVERGGFAAAGRVLGIPKSRLSRRIAELESRLDVRLLQRTTRKLSLTQAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R  + V  + +  Q  L    V+P G +R+A  I L Q  +   +  F+  YP ++
Sbjct: 63  ELYLRHCAAVRDEAQAAQDALAAVQVEPRGVIRVACPITLAQTTVGHLVPHFMAQYPQVK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +D+  +  D A+R+R  + +S SL+ + L        A+P  L    EP +
Sbjct: 123 VEMRVSNRVVDLVEEGVDVALRVRASLDESGSLVVKHLGESRSLLVASPELLARQGEPRT 182

Query: 183 IQELDKHNLITFGDLIPKCM-----EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
           +Q+L + + +    L  +        + N          +PR     V   L  +QY V 
Sbjct: 183 VQDLTRLDTVAMSALEGRATLRLLGPEANGKKAEYVLTHQPRY----VADDLVTLQYAVQ 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FL 292
            G G+  LPDY+      +  LV+++      +  V+  +P      G   A R F+ FL
Sbjct: 239 RGIGMTALPDYLCHAALSDGRLVQVLPGWAPQAGIVHAVFP---SRRGLNPAVRRFLDFL 295

Query: 293 KA 294
            A
Sbjct: 296 GA 297


>gi|302059251|ref|ZP_07250792.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
          Length = 214

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 3/193 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++T+ G  L+  
Sbjct: 11  AFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSMTDDGQVLYER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V   L+  +  L      PSG+LR++  + LG+  +  +++  L  +P + + +   
Sbjct: 71  CVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIERCLKDWPSLSVDITFS 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    +P +  +L +H
Sbjct: 131 DRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHPQPQTPDDLSEH 190

Query: 190 NLITF---GDLIP 199
             + F   G L+P
Sbjct: 191 QCLHFVSGGRLLP 203


>gi|300115283|ref|YP_003761858.1| lysR family transcriptional regulator [Nitrosococcus watsonii
           C-113]
 gi|299541220|gb|ADJ29537.1| transcriptional regulator, LysR family [Nitrosococcus watsonii
           C-113]
          Length = 301

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 139/304 (45%), Gaps = 17/304 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +L VF  VAR  S+T AAE+LHLSQ ++S QI  LE  VG+ LF +  + + LT
Sbjct: 1   MHVTLRQLHVFEAVARHLSYTRAAEELHLSQPAVSMQIKQLEDNVGLALFEQLGKKIFLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L+  + ++  +L   +  L+E      G L IA         L   L  F   +P
Sbjct: 61  EAGRELYHYSQQISRELSEAEGVLEELKGSRRGTLTIAVASTATYFALH-LLGRFHQRFP 119

Query: 121 DIQIQLILDNKDI---DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP-HYLKN 176
           +  I L + N+      +  +  D AI + KP +S  ++ +  +   +   A P H L  
Sbjct: 120 EANISLDVTNRKSLLRHLEENTVDMAI-MGKPPESLEVVAKPFMENPLVVIAPPAHPLAG 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            R PL++   +   L   G      ME F         +G    S ++++S  +I Q   
Sbjct: 179 QRVPLTVLRQETFILREHGSGTRIAMERFFA------RLGATITSSMEISSNEAIKQAVQ 232

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFL 292
            G G+ ++  + ++    L R++  +   SF +    Y  Y +  + T   KAF+N +F 
Sbjct: 233 AGFGLGIVSQHTLEKELALQRLV-ILEVDSFPIMRHWYIVYRKNKRATALHKAFKNLVFE 291

Query: 293 KARD 296
           +AR+
Sbjct: 292 EARE 295


>gi|297343178|pdb|3MZ1|A Chain A, The Crystal Structure Of A Possible Transcription
           Regulator From Sinorhizobium Meliloti 1021
 gi|297343179|pdb|3MZ1|B Chain B, The Crystal Structure Of A Possible Transcription
           Regulator From Sinorhizobium Meliloti 1021
 gi|297343180|pdb|3MZ1|C Chain C, The Crystal Structure Of A Possible Transcription
           Regulator From Sinorhizobium Meliloti 1021
 gi|297343181|pdb|3MZ1|D Chain D, The Crystal Structure Of A Possible Transcription
           Regulator From Sinorhizobium Meliloti 1021
          Length = 300

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 125/288 (43%), Gaps = 10/288 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  V  +G+FT A+  L+  +++++  I GLE  +  KL  R  R + +T  G+  + 
Sbjct: 4   RAFLRVVETGNFTRASASLNXPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYYE 63

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             + +   L+     L  +   P G+LR+ T       ++   L EF   YPDIQI L +
Sbjct: 64  RAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHKKYPDIQIDLGV 123

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ID   +  DCAIR    +   SLI R++      A A+  +L+    P    +L+K
Sbjct: 124 SDRTIDYLAENVDCAIRAGT-LTDQSLIARRITEXKFVACASRDFLERHPVPQHPSDLEK 182

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGIALLP 245
            N    G  +PK  +   +     R   E  +S       N   + +     G G+   P
Sbjct: 183 -NCYVVGYFLPKTGQQXPF--HFRRGNEEIEVSGRYTXAANESTTYLAAARAGLGVIQAP 239

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V++   N   V ++ D       +Y  YP     + +L+ F +++
Sbjct: 240 LFXVREDLRNGTXVPVLPDWQVEPXPIYLVYPPNRHLSSRLRVFADWV 287


>gi|115358777|ref|YP_775915.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284065|gb|ABI89581.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 290

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 136/291 (46%), Gaps = 23/291 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR  SFT AAEQL L+Q ++SRQI  LE   G  LF RHA+GLTLT +G +L 
Sbjct: 10  LQIFSTVARHRSFTRAAEQLCLTQGAVSRQIQTLEAHYGFPLFKRHAKGLTLTAEGEQLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V  E + ++E   ++L       +  L++ T +      +   +  F   +PD+ +Q+ 
Sbjct: 70  PVVDESFSRIEDISMKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQE 185
              +  +D S +  D A+ +      + +    L    +    AP   +    PL  + +
Sbjct: 125 TAWQHVVDFSTEPFDAAV-VYGTSPGAGVCALPLFDERLTPVCAPELRQAA--PLDVVGD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---MQYCVLGSGIA 242
           L +H L+          +  +W A +D   GE  +   +  ++ ++         G G+A
Sbjct: 182 LARHTLLH------PTRDHRDWRAWLDY-AGERAVDAERGPTFDTLDLATNAATQGFGVA 234

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    +V D+ +   L R  + V+      +F YPE L +  K++AF ++I
Sbjct: 235 IGDVTLVDDDVSARRLERPFDIVLETGARYFFVYPENLASQQKIRAFSDWI 285


>gi|170697500|ref|ZP_02888590.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137523|gb|EDT05761.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 299

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 119/270 (44%), Gaps = 7/270 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT AA  L +SQS++S  I  LET +G++L  R  R +  TE G +L 
Sbjct: 9   LLAFIAVARERSFTRAAAGLGVSQSALSHTIRSLETRLGVRLLTRTTRSVAPTEAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +  + ++E     L E   KP+G +RI  T  + + LL   L   L  Y +++++ +
Sbjct: 69  QNLAPRFDEIEDELSALAELRDKPAGTVRINATDYVIRTLLWPRLSPILRDYRELKVEFV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    DI     D  +RL   +    +  R    + M    AP Y      P + Q+L 
Sbjct: 129 TDYGLSDIVAQRFDIGVRLGDQVAKDMIAVRISPDLKMAIVGAPAYFAEREPPATPQDLV 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ I     +P     + W LA  D  +       +  N    ++   + G G+A +P 
Sbjct: 189 AHDCINL--RLPTHGALYAWELARGDDTLQVRVDGQVTFNGTYEMLDAALAGYGLAYVPA 246

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCY 273
            +   +     LV +++D   P+F  +  Y
Sbjct: 247 ELAVPHVAAGRLVSVLDD-WCPTFPGHHLY 275


>gi|187926334|ref|YP_001892679.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241665821|ref|YP_002984180.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728088|gb|ACD29252.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240867848|gb|ACS65508.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 315

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 2/174 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LET +G++L  R  R + +T+ G
Sbjct: 3   DLNDLVLFASVVTHGSFSGAARALGIPKSRVSRRVADLETRLGVRLLQRSTRAVHVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           S       E   +      E+ E +  KPSG+LR++  + +    +   L +FL   PD+
Sbjct: 63  SAFF-THCESMTQAARAAFEVAEHAGEKPSGRLRVSCPVGVAHVFIAPVLSKFLRAQPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           +++L + N+ +D+  D  D A+R+R  +  S+L+ R          A+P ++  
Sbjct: 122 RLELDVTNRRVDVIGDGYDVALRVRSTLDDSNLVVRSFGVSDQVLVASPSFVAE 175


>gi|115358924|ref|YP_776062.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284212|gb|ABI89728.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 299

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 119/285 (41%), Gaps = 6/285 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 3   IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEVAFGQTLFTRSPSGLLPT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 63  EAALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPMLAQLRRDHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P Q  +L+ R++  I +  +A   YL     P
Sbjct: 123 GLVIELVPTDRIQDVLNREADIAVRMAPPAQ-DALVARRVGEIDIGLFARDDYLARNGTP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H LI F  + P     F   A    P+ +     L+ +S L+ +     G G
Sbjct: 182 STTGELAHHALIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           I    + + K +  LVR++ D  T     +    E L+ + +  A
Sbjct: 237 IGFCQNGLAKRDARLVRVLPDGPTMKLETWVVMHEDLRTSPRCHA 281


>gi|258542482|ref|YP_003187915.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633560|dbj|BAH99535.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636619|dbj|BAI02588.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639672|dbj|BAI05634.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642728|dbj|BAI08683.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645783|dbj|BAI11731.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648836|dbj|BAI14777.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256654880|dbj|BAI20807.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 298

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 11/262 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW  L+ F  VARSGS + A   + +  +++ R I  LE  VG  LF RH RG  LT 
Sbjct: 4   TLDWRNLQFFVAVARSGSLSEAGRLMGVDHATVGRHIVALERSVGKILFERHPRGYALTR 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L  VT+E   + E TQ+E    +   +G +RI+    +    L   +   L   P 
Sbjct: 64  YGEDLF-VTAEAMDR-EATQVEASSPAHGLTGTVRISALEGVANFFLASRIGPLLADNPA 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++   + I +S   AD AI +  P      +  +L   ++  YA   YL   REP 
Sbjct: 122 LTVEILTIQQIIALSRRQADIAITV-TPAVDDRFLCEQLTPYYLCVYATHEYL--AREP- 177

Query: 182 SIQELDKHNLITFGDLIPKC--MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +I++ +  +   F   + +   M + ++L  +       RI   Q +S  + M+    G 
Sbjct: 178 AIKKREDFSSHLFSGYVDEMIFMRELDYLEDLGVSRKMVRI---QNSSVQAQMEAACSGL 234

Query: 240 GIALLPDYIVKDNPNLVRIMED 261
            +A+LP ++    P LV ++ +
Sbjct: 235 CMAVLPTFVAATRPELVPVLPE 256


>gi|330809305|ref|YP_004353767.1| DNA-binding transcriptional activator GcvA [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377413|gb|AEA68763.1| Putative DNA-binding transcriptional activator GcvA [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 18/293 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F   AR  SFT AA +L+++Q++IS QI  LE E+G++LF R   GL LT++G  
Sbjct: 9   NGLKAFESAARHMSFTKAALELNVTQTAISHQIRRLEEELGVRLFLRLKDGLALTDEGHG 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   +H+L      L ES  + +  L I+T +      L   L  F   +P+I ++
Sbjct: 69  YFPGVRAAFHELRYCTQTLLES--RNNSVLTISTLVSFASKWLLPRLASFQQAFPNIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +    + +D      D AIR      K +++  L+  ++  +      +P  L+      
Sbjct: 127 VTASTERVDFRKGGVDAAIRYGSGDWKGLRAGWLMADEIFPV-----CSPRLLQGLTALE 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +L +H L+    +     +D++ WL+   +P      S L  +  +  +Q  V G G
Sbjct: 182 NPGDLARHTLLQVSGV---THDDWSAWLSAAGQPKKLAEGSRLTFDLAMMAVQAAVDGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +     V+D+    R++      +      YF  P    +T K++AFR ++
Sbjct: 239 VCIGRSTYVEDDLKAGRLVAPFDLRLKSDLGFYFVSPLETADTPKVQAFRTWL 291


>gi|83719310|ref|YP_441355.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167618205|ref|ZP_02386836.1| LysR family transcriptional regulator [Burkholderia thailandensis
           Bt4]
 gi|257139971|ref|ZP_05588233.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83653135|gb|ABC37198.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 320

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 2/190 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E    ++ P G++RI + +  G++ L   + EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHGAI-PQGRVRINSHVPFGKHHLMPLVPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +       D +D AIR    +  S L+ R+L    M    +P YL+    P +  
Sbjct: 126 DIVLSDAAAGPLDDRSDIAIR-SGSLDDSRLVMRRLGGSRMIVVGSPAYLELNGMPATPD 184

Query: 185 ELDKHNLITF 194
           +LD+HN I  
Sbjct: 185 DLDRHNCIGL 194


>gi|115360134|ref|YP_777272.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285422|gb|ABI90938.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 347

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 136/291 (46%), Gaps = 22/291 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +A+  S + AA  L ++  + ++++  LE   G +L  R  R ++LT +G    R  
Sbjct: 40  FVQLAKLKSLSGAARSLGITPPAATKRLGILEDRFGKRLVNRTTRSVSLTPEGEMYARYA 99

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           +++  ++   +  +  +   P G+LRI  T+  G+  +   + EF   YP++ +Q ++ +
Sbjct: 100 TQILDQVREMEDAIAGTPADPHGRLRINATLGFGRTTIAPLVSEFAKRYPNVDVQFVVTD 159

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+     D AIR  + +    L  R+L++      A+P YL+    P   ++L  H 
Sbjct: 160 RPVDLVEGAFDMAIRFGE-LPDQRLRARRLMSNRRFLCASPKYLERNGVPQCKEDLAHHR 218

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGIAL- 243
            I    +  +  + F     V R + E  +  L+V+  LS      ++++ + G GI + 
Sbjct: 219 CI----IHTQNDDAFG----VWRFMQEDHLEALKVSGSLSSNDGDIVLRWALDGHGILIR 270

Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               L  YI      LV  + DV+ PS  ++  YP     + + +AF +F+
Sbjct: 271 SEWDLAKYIQSGRLRLV--LPDVVLPSADLFVYYPGQRNESTRARAFIDFL 319


>gi|330961833|gb|EGH62093.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 315

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILASVEEAEAEASDAHARPAGQLKVHSMPGVGQHYVIDAIARYRRNHPDVAFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K         +L
Sbjct: 126 TMTHRVPDLLEEGFDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAHKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+        WL   D P G+  +    S L VNS  ++      G G+ 
Sbjct: 186 LNHACLR---LVSPVFPLDKWL--FDGPDGQEMVTINSSPLLVNSADAMKTAISSGMGVG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y   +   N  LVR++ D  +    +Y  YP            R ++  K R W
Sbjct: 241 ILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPS-----------RQYLDAKIRTW 287


>gi|327191458|gb|EGE58480.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 308

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V  +GSF+ AA  L ++Q ++SRQ++ LE     +L +R   GL+LT +G ++ 
Sbjct: 7   LRTFQRVVETGSFSAAAHDLDVTQPAVSRQVAALEGHFNTRLLHRTTSGLSLTAEGERML 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   +   +E             SGK+R++    LG +L +  L +FL  +P + ++L+
Sbjct: 67  PMALRILEAVEELGDAAGSEGAMASGKVRLSVPAPLGLHLSE-RLGDFLAAHPKLSVELL 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +  D+  +  D  +RL  P+  SSL+ R++        A+P YL     P + +++ 
Sbjct: 126 FREESSDMIEERLDLEVRL-GPVADSSLVCRRIGWTTAFLVASPAYLARKAAPRTPRDIK 184

Query: 188 KHNLITF 194
            H  + +
Sbjct: 185 DHECLWY 191


>gi|300696839|ref|YP_003747500.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299073563|emb|CBJ53083.1| Transcriptional regulatory protein LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 322

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 8/220 (3%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           L ++ +++S+ ++GLE  +G++L  R  R L LTE+G    R        L+     +  
Sbjct: 33  LGITSAAVSKNVAGLEKALGVRLMNRTTRTLNLTEEGRAFLRQARVALDALDAAIDTIAA 92

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
             V PSG++RI+T+   G+  L   L   L  YP + +++  D++ +D+  D  D AIR 
Sbjct: 93  QRVVPSGRVRISTSWAFGREQLMPALPGLLSRYPALSVEVDFDDRIVDLVRDGYDLAIR- 151

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT----FGDLIPKCM 202
              I  S+L+ R +  +++   A+P YL     P + Q L  H LI      G + P   
Sbjct: 152 GGSIPDSALVSRPIFRLNLVLVASPDYLARHGVPQTPQALRSHRLIARRFLGGAVAPWGF 211

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              N   T   P      + L +++  S++Q    G GIA
Sbjct: 212 SAENGSFTTFDPADA---AVLTLSAPESVVQAACSGVGIA 248


>gi|294011462|ref|YP_003544922.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292674792|dbj|BAI96310.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 337

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 135/289 (46%), Gaps = 17/289 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF   AR  +FT AA++L ++Q+++S Q+  LE  +GI LF R  R + LT++G ++ 
Sbjct: 41  VRVFEAAARLENFTAAAQELGMTQAAVSYQVKLLEERLGISLFQRAGRKVALTDRGREIA 100

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V S  + ++      L +  +     L I+ T       L   +  F +  P + +++ 
Sbjct: 101 TVVSRAFDQMREGFAALTQDHMT---ILTISCTNSFAHLWLAQRIGTFQMRQPGLAVRID 157

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D++ D  D A+R  +  +   L  + L    +    +P +L     P++    D
Sbjct: 158 ATDRVVDLARDGVDVAVRGGRG-EWPGLEAKLLTHNRLAPLCSPAWLA-ANGPIA----D 211

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
              L     L P  M    W A +     G+     + ++S +   +  + G G+A++  
Sbjct: 212 AQALHALPRLSPDDMWWHEWFAAMGVEADGKGLPPAIALDSQVMEGRAAMAGQGVAIVNP 271

Query: 247 YIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFI 290
           ++ K       ++E V  PS+     + +  YP  ++NT K+KAFR++I
Sbjct: 272 FLWKAEVEAGLLVEAV--PSYVRERASYWVVYPPHVRNTAKVKAFRDWI 318


>gi|293394686|ref|ZP_06638978.1| glycine cleavage system transcriptional activator [Serratia
           odorifera DSM 4582]
 gi|291422812|gb|EFE96049.1| glycine cleavage system transcriptional activator [Serratia
           odorifera DSM 4582]
          Length = 305

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   +++ D   D  D AI   R   P     L   +L   ++    +P  L       S
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRGNWP----GLRAERLYAEYLLPVCSPSLLTGDHALKS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
             +L  H L+             +WLA   R +G   I+  Q    +    ++Q  V G 
Sbjct: 183 PDDLAYHTLL-------HDTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL+ + + +      R++    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 235 GVALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|187926689|ref|YP_001893034.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241666201|ref|YP_002984560.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728443|gb|ACD29607.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240868228|gb|ACS65888.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 311

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 120/273 (43%), Gaps = 8/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  +   GS   AA   +L  ++++R++  LET +G +L  R AR L  T +G  
Sbjct: 3   DDLALFVSIVDHGSLQAAARHANLPPATLTRRLQKLETALGCQLLLRSARSLKPTPEGQL 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   L  T   L +   +  G LR+   ++L + L       F+ ++P+I+++
Sbjct: 63  YYEQCRPLLTALAQTTATLDDDLNQVKGTLRVLAPLNLSRGLFAPAYASFMAMWPEIRLE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L N++ D+    AD AIR+ +      L QR+L  I +   A+P Y+     P   ++
Sbjct: 123 LSLSNRNEDVWRHGADLAIRVGQ-QDDPKLRQRRLGVIGIVLVASPAYVAAHGMPAHPRD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+    +        +   T++    +P   C +VN           G G+   P
Sbjct: 182 LAAHRLLVASPISTWRFTSPDGKETIEM---QPEAQC-EVNDIEMAAALAEAGQGLLYCP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
             +     +   LVR + D  TP   +Y  +P+
Sbjct: 238 RTLCHRALEAGQLVRALPDWRTPQRPIYAVWPQ 270


>gi|160901335|ref|YP_001566917.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366919|gb|ABX38532.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 324

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 115/251 (45%), Gaps = 14/251 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR  +F  AA++L L+QS++SRQI  LE EVG+ LF RH R + LT  G++L 
Sbjct: 22  LRAFLAVARHLNFRAAADELSLTQSAVSRQIQSLEDEVGVPLFLRHTRAVELTGAGAQLL 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +    +++ +  +++++  + S  + I T        L   L+ F   +PDI I+  
Sbjct: 82  RSVAPALEQIDASVRQIRQTVGRKS--VAITTWASFAAMWLIPRLESFQRAWPDIDIR-- 137

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQ-RKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +D  D  + +D  D  + LR         Q ++L    +   A+P  L       +  + 
Sbjct: 138 IDTSDTVMDLDTTDVDLALRYGRAGDGWPQAQRLFGEQLAVVASPRLLAGGPPLRTPADA 197

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSG 240
            ++ LI  GD     M    WL    R  G      LQ   +L       I+Q  + G G
Sbjct: 198 ARYTLIETGDA--HRMPQLEWLGW-QRWFGVQGCDQLQPPRWLYFNYAHQIVQAALAGQG 254

Query: 241 IALLPDYIVKD 251
           +A+    +V D
Sbjct: 255 LAIARLPLVAD 265


>gi|161523103|ref|YP_001586032.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160346656|gb|ABX19740.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 329

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 127/287 (44%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQI  LE ++G+ LF R  R + LT+ G +  
Sbjct: 47  LLVFEAAARHESYTRAADELSLSQSAISRQIQTLEDQLGVPLFRREGRSVKLTDVGRRYF 106

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 107 AEVGGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 165

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               +ID  +D  D AI +        L   +L    + A A+P    +     +     
Sbjct: 166 SRIGNIDFHVDDLDAAIAVGTG-DWPGLHAHRLYNEFLIAIASPDAPPDANGERAPAWAA 224

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           +  L+          E   W A       + RI    ++ S+L  +Q    G GI L+P 
Sbjct: 225 RQTLLGVTSNQHAWAE---WFAHYRLDHRQMRIGPSFELTSHL--IQAVRAGMGIGLVPK 279

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +V+D  + N +  + D IT   + Y  YP   ++   L AFR+++ 
Sbjct: 280 VLVEDELSRNELVSIGDAITSRRSYYLVYPPENESLPSLAAFRDWLM 326


>gi|104780732|ref|YP_607230.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95109719|emb|CAK14420.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 310

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 124/296 (41%), Gaps = 16/296 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +  L  F   A  GSF  AA +L L+ +++ + ++ LE  +G++LF R  R LTLTE G
Sbjct: 3   SFSSLECFIRSAEVGSFAEAARRLSLTPAAVGKNVAQLEARLGVRLFQRSTRKLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     S+ +  ++     L  +  +P+G LR++     G+  +   L EFL  YP I 
Sbjct: 63  QRFLGEVSDSFRTIQYAVANLASAEGQPAGLLRVSMGTVFGRLYVLPLLGEFLRRYPAIT 122

Query: 124 IQLILDNKDIDISMDYADCAI--RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
                DN+ +D+     D AI      P+    ++ RKL   H    AAP YL+   +  
Sbjct: 123 PDWHFDNRQVDLIGQGFDAAIGGGFELPL---GVVARKLTPAHRVLVAAPGYLQRHAQID 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV----DRPIGEPRISCLQVNSYLSIMQYCVL 237
             Q L  H  I      P+     +W  T       P+  P+   +  +     +    L
Sbjct: 180 HPQALQAHQGILIRS--PQTGRVRSWPLTSRWQEQCPLQLPQTMTMSDSDAACAVAEQGL 237

Query: 238 GSGIALLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G  +  LP    Y+      L R++ D       +   Y E     GK +AF +F+
Sbjct: 238 GIALVSLPFAVPYLTAG--RLSRVLPDWYVDDGNISLYYAEHKLLPGKTRAFIDFV 291


>gi|331016600|gb|EGH96656.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 304

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 133/287 (46%), Gaps = 13/287 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F +V  + SFT A ++L +S S + + +  LE  +G++LF+R  R + LT +GS     
Sbjct: 9   LFVLVTETRSFTLAGKRLGISSSGVGKSVGRLEESLGVRLFHRSTRSIALTLEGSIFLDR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +L+  Q+EL  +   P G+LRI+  +  G  L+   + +F+  YP+I++ +   
Sbjct: 69  CRRILSELDAAQLELSNARDLPKGRLRISVPLVFG--LVMPVVIQFMRTYPEIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R  +P   S L+ +++ +  +    +P Y      P    +L  H
Sbjct: 127 DRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCIVGSPDYFARHGLPEQPADLIHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +      P   +  +W   + R  G       Q    N+   +++    G GI  LPD
Sbjct: 186 ACLQHK--FPSTGKFEHW--PLRREAGSEDFELPQTMVCNTTEVLVEVARAGLGITCLPD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++        LV I+ D    + +    +P +   + +L+ F +F+
Sbjct: 242 FMLASAIRKGELVPILADYTLHTGSFRLFWPSSKHLSVRLRVFIDFM 288


>gi|313498497|gb|ADR59863.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 307

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 124/247 (50%), Gaps = 7/247 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F     +  F+ AA +L L+ SS++R +  LE  +G  L  R  R ++LTE G++ +
Sbjct: 13  MKMFVATVDAQGFSAAARRLGLATSSVTRLVDALEASLGATLLNRSTRQVSLTEAGARYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    ++  L+     + +   +P G LR++  ++ G+ ++  +L  FL  +P +++ + 
Sbjct: 73  QRARGIFEALDEADASIADRGEEPVGVLRLSLPVEFGRRVIAPHLGPFLAQHPALELDID 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186
           L ++  D+     D +IRL  P  +  L+ R+L        A+P YL   REPL   +EL
Sbjct: 133 LSDRLDDLLDGRYDLSIRLGDPSPNDELVCRRLGGFQRWLVASPAYLAG-REPLQHPREL 191

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
             H  + F        +   W  T  +   E  +S    ++   +++   L GSGIALL 
Sbjct: 192 LDHACLRF----RYGHKARPWRLTCGQDSLELDVSGPLRSANADMLRETALAGSGIALLA 247

Query: 246 DYIVKDN 252
           D++V+++
Sbjct: 248 DWLVRED 254


>gi|300694269|ref|YP_003750242.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299076306|emb|CBJ35618.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 316

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 19/296 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LE  +G++L  R  R + +T+ G
Sbjct: 3   DLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           S  +    EV  +      E+ E +  +PSG+LR++  + +    L   L +FL   P++
Sbjct: 63  SAFY-AQCEVMTQAARAAFEVAEHAGERPSGRLRVSCPVGVAHVFLAPVLSKFLRAQPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL- 181
           +++L + N+ +D+  +  D A+R+R  +  S+L+ R          A+P ++   R P  
Sbjct: 122 RLELDVTNRRVDVIGEGYDVALRVRSTLDDSNLVVRTFAASDQVLVASPSFVAE-RGPFD 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVL 237
           S   L     +          E   W  T   P G       +     +    + Q  + 
Sbjct: 181 SAASLRGVAGVG---FGGTGGERARWRLT--SPGGTAVDIEYVPAFVTDDLFLLGQTAMA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+A LP  +  D   +  LV ++ D   P   ++  +P      G + A R FI
Sbjct: 236 GVGVAQLPFNLCGDAIRDGRLVVLLPDHRLPVHQLHAVFP---SRRGLVPAVRAFI 288


>gi|170697670|ref|ZP_02888758.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137418|gb|EDT05658.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 309

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT  G+ 
Sbjct: 5   DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTADGAL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +      +       G+L +     + + ++   L      YP +Q+ 
Sbjct: 65  LLERGRRLLAEADELDRLFRRRDRDVVGRLNVDAPSRIARRVIAPALPSLFRRYPKLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P     
Sbjct: 125 LGSTDRVIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFALINCASPDYLRECGVPEHPDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H     G   P    +  W    D     +  P  S + VN+  + +  C+ G G+ 
Sbjct: 184 L-AHGHWAIGYASPTTGRELGWEYCADGGQHTLALP--SRVIVNNAETYIASCIAGLGLI 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P + V    D+  LV +M         V   YP     + +L AF
Sbjct: 241 QIPRFDVVHLLDSGALVEVMPGHRAAPMDVSAVYPHRRHRSRRLNAF 287


>gi|298290456|ref|YP_003692395.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296926967|gb|ADH87776.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 309

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 13/241 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+F+ AA+ L + + +I++ I  LE+ +  KL  R  R + +T  G+  +
Sbjct: 7   MRAFVRVVEAGNFSRAADLLEMPKPTITKLIQQLESHLRTKLLNRTTRRVGVTPDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+     + ++   PSG+LR+     L  N+L   L +F   YPDIQ+ L 
Sbjct: 67  ERALALLSDLDELDGSMTKAQTTPSGRLRVDVGSSLALNVLIPALPDFHARYPDIQLDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           + ++  D+  +  DCAIR  + +   SLI R++  + +   A P Y++    P   ++L 
Sbjct: 127 VSDRPADLVGENIDCAIRGGE-LLDPSLIARRIGQVELVMCATPGYIQRHGMPQHPRDLR 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-----CLQVNSYLSIMQYCVLGSGI 241
           D H +I +    P+    F +    D   GE          + VN   + +  C+ G GI
Sbjct: 186 DGHRVIAY--FSPRTGRRFAF----DMIRGEETYELDLPYAVAVNDSTAYLAACLTGLGI 239

Query: 242 A 242
           A
Sbjct: 240 A 240


>gi|218460375|ref|ZP_03500466.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Kim 5]
          Length = 311

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 132/291 (45%), Gaps = 20/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  +F+ AAE+L L+Q +ISRQI+GLE ++G+ LF R +RG+ LTE G+   
Sbjct: 15  LAAFDSVARLSTFSAAAEELSLTQGAISRQIAGLEEQLGVLLFERTSRGVILTEAGTDYA 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +    ++ +    L   + + + +L +A     G   L   + +F+  +P+I +   
Sbjct: 75  RAIAIALAEIRSAS--LHAMTKQHNDQLNLAILPTFGTRWLMPRIPQFVARHPEITLNFA 132

Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                 D   D  D AI + +P     +S+ L++  +  +   ++ + H +    + L +
Sbjct: 133 TRIGMFDFDRDDIDMAIHIGQPDWPGAESTFLMEEMVAPVASPSFLSSHPIAKPEDLLRL 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L   +        P     F     V+   G P    ++   + ++ Q C+ G G+AL
Sbjct: 193 PLLQMASR-------PGAWNHFFESLEVN---GTPS-QAMRFEQFSNVAQACIAGLGLAL 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +P +++     N  LV+     +      Y   P + K+   + AFR ++ 
Sbjct: 242 MPLFLIDSELANGQLVQAFPHQVKSPSAYYAVAPLSRKDFRPVVAFRAWLL 292


>gi|149909032|ref|ZP_01897691.1| substrate-binding transcriptional regulator, LysR family [Moritella
           sp. PE36]
 gi|149808043|gb|EDM67986.1| substrate-binding transcriptional regulator, LysR family [Moritella
           sp. PE36]
          Length = 291

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 134/293 (45%), Gaps = 28/293 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  +A+  SFT AA+ L +S+  +S QI  LE E    L  R  R + LT +G K+ 
Sbjct: 10  LMLFVEIAQQLSFTKAAQNLSISKGYLSDQIRKLEAEFKCPLLVRTTRSVRLTPEGEKI- 68

Query: 68  RVTSEVYHKLETTQIELQESSVKP----SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               E   K++ T ++L  +  +     SG LRI   I   +  L     +F L+YPDI 
Sbjct: 69  ---LEQGKKIKATMLDLDRNVHQEHNAISGSLRITAPILFTERFLLDICHDFKLIYPDIH 125

Query: 124 IQLILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             +     + D++ D  D A R  L+ P    +++ ++L +      A+P YL     P 
Sbjct: 126 FIIDSSYTNYDLNQDDFDLAFRATLQPP---QNMVAKELFSYQHCLCASPEYLAEYGTPQ 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +I +L  H+ ++        +E   W L + D  I       L +N +  +    + G G
Sbjct: 183 NINDLSSHHCLS-------AVETQIWPLKSADAIIK----GWLTINDHHLLKLQALAGRG 231

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  + +Y V        L +++E+   P  ++Y  +P+ +  + KLKAF  F+
Sbjct: 232 IIRVANYYVDRELKEGRLQKVLENEYIPGLSIYLLHPQLIYPSAKLKAFIAFV 284


>gi|154251721|ref|YP_001412545.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gi|154155671|gb|ABS62888.1| transcriptional regulator, LysR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 317

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 139/291 (47%), Gaps = 21/291 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR GSF+ AA +L ++ +++S QI  LE E+G  LF+R  R + LTE+G +L+
Sbjct: 12  LRAFEAAARHGSFSRAAAELSVTHAAVSHQIRALEEELGAGLFHRTGRAVELTERGERLY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V +  + ++        ++  K +  L ++         L   L +F    P+I+++L+
Sbjct: 72  PVLAAAFDQIAEG---WSQAGAKDTAALTVSVEPSFAARWLVLRLGKFNRANPEIELRLL 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D S +  D  +R         ++  KL    ++   +P  L + ++P+   E  
Sbjct: 129 PSSELVDFSREDVDIGVRYGL-GGWPDVVSEKLFEATVYPVCSPALL-DPKKPIRKPE-- 184

Query: 188 KHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
             +L ++  L  + ME +  WL      +  PR +    L + + L+ +Q    G G+AL
Sbjct: 185 --DLKSYPLLHEETMEHWQQWLEAAG--VKHPRWALRGPLFIEASLA-LQAAAGGQGVAL 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290
             D +   +     L+R+  D+  P    Y+  YP+      K++AFRN+I
Sbjct: 240 ANDTLAMADLAEGRLIRLF-DIEMPDEEGYWLVYPKDGLKKPKVQAFRNWI 289


>gi|86156771|ref|YP_463556.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773282|gb|ABC80119.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 313

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 111/257 (43%), Gaps = 9/257 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DW  L  F  + R+GS   AA +L + +++++R+++ LE  +G+ LF R  +G   T 
Sbjct: 20  GLDWGHLEFFLELVRTGSHARAARRLGVDRNTVARRVAALEGALGLALFERGPQGWACTT 79

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L  + S V   +               G +R+ T   L  +L    +      +P 
Sbjct: 80  TGQELAELASRVEQDVLALARHADTRDRALDGTVRLTTASHLATHLFLPAVGVLRERHPG 139

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D +  D++   AD A+R+ +P + + L+ RKL  +    Y     L      +
Sbjct: 140 LVLEIAADQRAFDLTRREADLAVRMGRP-RDAGLVTRKLSDVAYGLYGGRAALGGRSRAV 198

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                    L      +P+      WL  V       R    + NS  +++Q   LG G+
Sbjct: 199 DFAADPFVGLDEGHAAVPQ----ERWLERV----APARRIVFRCNSTTALIQAARLGLGV 250

Query: 242 ALLPDYIVKDNPNLVRI 258
           A+LP ++   +P LVR+
Sbjct: 251 AVLPRFVADRDPALVRL 267


>gi|218515597|ref|ZP_03512437.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 218

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 1/178 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R L+LTE G+     
Sbjct: 9   AFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKALGGTLLHRTTRKLSLTEDGAVFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++E    ++ E     SG +RIA  +  G+  L   L  FL  +P+I + L +D
Sbjct: 69  AGRIVREIEEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLAEHPEIHLTLDID 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++ +D + D  D  IR   P+  S L+  KL        A+P YL     P S+ +L+
Sbjct: 129 DRRVDAASDGYDAIIR-NGPLADSRLVAWKLAPSRRLLCASPDYLARQGMPSSLADLN 185


>gi|90412626|ref|ZP_01220628.1| transcriptional regulators, LysR family protein [Photobacterium
           profundum 3TCK]
 gi|90326434|gb|EAS42846.1| transcriptional regulators, LysR family protein [Photobacterium
           profundum 3TCK]
          Length = 316

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 130/262 (49%), Gaps = 8/262 (3%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSFT+ +EQ ++ +S IS+ IS LE E+G++L  R  R L+LT  G+++      + + L
Sbjct: 17  GSFTNVSEQRNVDRSVISKHISRLEGELGVRLLNRTTRSLSLTAAGNEIVNQAKLLRNLL 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
             T    Q    +P G LRI ++   G+  +Q  +  F   YP++ ++L L+++ +D+  
Sbjct: 77  NDTHRLAQNYHSEPKGILRITSSAMFGRQYVQQAVLAFQQQYPEVDVELRLEDRFMDMVS 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           +  D   R+ KP ++SSLI RK+    +   A+P +++   E  +I++L+      +   
Sbjct: 137 EGFDIGFRIGKP-KNSSLIIRKVARNRLLIVASPEFIEKHGEIKTIEQLEALPAAVYA-- 193

Query: 198 IPKCMED-FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NP 253
            P  + D F +  +             +VN    I +  V G+ +A++   ++++     
Sbjct: 194 APGLLIDKFTYFDSNKESKKLQLNVAYKVNDVEMITKTAVAGNMLAVVTAQMIENEILEG 253

Query: 254 NLVRIMEDVITPSF-TVYFCYP 274
            L+ IM  +    F T Y  YP
Sbjct: 254 KLIPIMTQLHLDDFGTFYAVYP 275


>gi|9967137|dbj|BAB12272.1| probable transcription activator [Acinetobacter sp. M-1]
          Length = 288

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 133/270 (49%), Gaps = 9/270 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE+L  + S +SR +S LE+++ + L  R  R L LT
Sbjct: 1   MKSTVEELLAFMTIVDTGSFIAAAERLGQTASGLSRSLSRLESKLEVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +  +   ++   L   +  LQ+S    SG +RI +      +++   + +F   YP
Sbjct: 61  QEGQQFLQQARKILSDLNAAEEALQKSDQDTSGVIRIDSATPFILHVITPLVHKFRQCYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  ++  ID+     D A R  + +  SSL  + +    ++  A+P YL+    P
Sbjct: 121 NIEVELNSNDLVIDLLEHKTDVAFRFGE-LHDSSLHAKLVCKSRIYIVASPEYLQRKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  Q L +H++I F    P  +  +      +    +P++   + +S  ++ Q C+ G G
Sbjct: 180 LQPQALPEHDVIGFTR--PTYINTWPIKIEGEYFQAQPKV---RASSGETVRQLCLRGQG 234

Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF 267
           IA L ++ I +D     L  + ED I  S+
Sbjct: 235 IARLSEFEIWQDIREGRLEALFEDQIEHSY 264


>gi|291618650|ref|YP_003521392.1| GcvA [Pantoea ananatis LMG 20103]
 gi|291153680|gb|ADD78264.1| GcvA [Pantoea ananatis LMG 20103]
          Length = 313

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 129/295 (43%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 17  NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 76

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F L YP I ++
Sbjct: 77  YYLDIKEIFSALNEATRKLQARSAK--GALTVSLLPSFAIQWLVPRLSSFNLAYPGIDVR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++D +   D  D AI   +      L   KL   ++    +P  L     PL    
Sbjct: 135 IQAVDRDEEKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPA-LMTGENPLKT-- 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
               +L  F  L      D  W + + R +G   I+  Q    +    ++Q  + G G+A
Sbjct: 191 --PMDLARFTLLHDASRRD--WQSYI-RQLGVQHINVQQGPIFSHSAMVLQAAIHGQGVA 245

Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 246 LANNVMAQSEIEAGRLICPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 300


>gi|222084952|ref|YP_002543481.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722400|gb|ACM25556.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 295

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 129/287 (44%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF + A + SF  A E L +S S+I + ++ LE  +G++LF+R+ R + +T +G    
Sbjct: 7   LNVFMIAAETRSFVRAGEVLGVSASAIGKTMARLEKRLGVRLFHRNTRNIAITAEGIMFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                ++ ++E  + EL ++   P G LR+  ++ L   L    + +F+ ++PD+ I L 
Sbjct: 67  ERCRRIFSEIEAAEQELSQTIAAPRGWLRV--SLPLAGMLFMPTITKFMRVFPDVMIDLD 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  +R  + I  S L+ R L         +  Y      P   ++L 
Sbjct: 125 FTDRLVDVIEEGFDVVVRTGE-ITDSRLMVRTLGRFSHRIVGSKEYFDRFGIPKKPEDLS 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSGIALLPD 246
            H  +      P   +   W        G+  +    + S L  ++     G G+A LP 
Sbjct: 184 AH--LCLHHKYPSTGKLERWPLRYGAGAGKLELPVSSMASTLEPLINMAEAGLGVACLPL 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +     +  LV ++ D +  +      +P + + + K++AF  F+
Sbjct: 242 FTIGGQIADGTLVSVLADHVEDAGEFRVLWPSSRQLSPKIQAFVKFM 288


>gi|167573644|ref|ZP_02366518.1| Transcriptional regulator [Burkholderia oklahomensis C6786]
          Length = 301

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 138/280 (49%), Gaps = 16/280 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQTFATVVDTGSITAAAQQLELTVSATSRTLGRLEKKLQTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  + ++     +PSG+LR+        +++   +  +   YP
Sbjct: 61  EEGRAFLQNARAIIESVERAEEQMAARRERPSGRLRVDAATPFMLHVVVPLVNGYRTRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +++ ID+     D AIR+ + ++ S+L  R + +  +   A+P YL     P
Sbjct: 121 HVELELNSNDEIIDLLERRTDVAIRIGR-LKDSTLHSRAIGSSRLRILASPQYLDVHGNP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RIS-CLQVNSYLSIMQYCVLG 238
             + +LDKH L+ F        E  N    + R  GEP RI+  L  +S  ++ Q  + G
Sbjct: 180 RRVDDLDKHTLLGFNQ-----PESLNQWPVLGRD-GEPYRIAPALASSSGETLRQLALQG 233

Query: 239 SGIALLPDYIV---KDNPNLVRIM----EDVITPSFTVYF 271
           +GI  L D++    +D   LV+++     +V+ P   VY+
Sbjct: 234 AGIVCLSDFMTARDRDEGRLVQLLPRQTREVLQPIHAVYY 273


>gi|157368375|ref|YP_001476364.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320139|gb|ABV39236.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 287

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 128/289 (44%), Gaps = 16/289 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW  L+ F V+AR+GS + AA +L    +++ R+++GLE  +G+ L  R  R   LT+ 
Sbjct: 2   FDWQDLKHFVVLARTGSLSAAARELGCDHATVGRRVAGLEKALGLPLILRLPRSTPLTQD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +  + +++ ++        +     P  ++RI+    +   ++   + +F   +P I
Sbjct: 62  GKVIAGLATDIENQSHAIVRHARSIGETPQTQVRISAPPSIAARVIAPQIAQFHQTFPHI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L  ++   ++    A+ A+R+ +P Q   L+QR +  +    YA P +        +
Sbjct: 122 TLILSGESAIAELDRGDAEVAVRMVRPQQPDLLVQR-IGMMRYALYATPQHAALPEAARA 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D H                +         G P +   Q +   S+ +    G G  
Sbjct: 181 FIGYDHH-----------YQNQPHQQWLQQLLQGRPVV--FQASDLFSLQEAARSGLGAV 227

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFI 290
           +LP ++   +P++V +   +  P+  ++   YP+  ++T  ++A  NF+
Sbjct: 228 VLPTFVADGDPDMVTLPTAIAAPTRELWLVTYPDLARSTA-VRAVMNFL 275


>gi|150377616|ref|YP_001314211.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032163|gb|ABR64278.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 317

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 133/298 (44%), Gaps = 26/298 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF      GS   AA +L  S ++ISR +  LE  VG++L +R  R L L+E G +
Sbjct: 5   DAMKVFVTAVEEGSLAAAARKLKRSPTAISRALGLLEERVGVELLHRTTRSLKLSEAGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              V   V   LE   I        P G L I+    LG+ +L+  L +FL  +  + ++
Sbjct: 65  YVEVCRRVLVDLEEADIIAGGERSSPRGVLTISAPPILGEEVLRPILDKFLKQHSSVSVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLS 182
           L++ ++ +++  +  D A+R+     S+ +  R    +     A+P YL N    REP  
Sbjct: 125 LLMLDRFVNLVDERVDIALRIGNLTDSTHITTRIGGDVRRVVVASPDYLANRNAIREP-- 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQ----VNSYLSIMQYC 235
             +L +H++I F         +F   +    P+G+   PR         VNS  +     
Sbjct: 183 -GDLLQHDIIAF--------SNFGIGSWAFSPVGQGTIPRTVHFSPRYVVNSVRAAAASA 233

Query: 236 VLGSGIALLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             G G+  L  Y    +V+D   L  I+ +    +  V+   P+   +  K++AF +F
Sbjct: 234 AGGMGVTRLYSYHVAELVRDG-ALKIILSEYEPSALPVHLLTPQGRISVPKVRAFIDF 290


>gi|28868429|ref|NP_791048.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967126|ref|ZP_03395275.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301386289|ref|ZP_07234707.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061418|ref|ZP_07252959.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302132976|ref|ZP_07258966.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28851667|gb|AAO54743.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927968|gb|EEB61514.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|331015289|gb|EGH95345.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 315

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSSVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILASVEEAEAEASDAHARPAGQLKVHSMPGVGQHYVIDAIARYRRNHPDVAFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K         +L
Sbjct: 126 TMTHRVPDLLEEGFDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAHKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+        WL   D P G+  +    S L VNS  ++      G GI 
Sbjct: 186 LNHACLR---LVSPVFPLDKWL--FDGPEGQEMVTINSSPLLVNSADAMKTAISSGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y   +   N  LVR++ D  +    +Y  YP            R ++  K R W
Sbjct: 241 ILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPS-----------RQYLDAKIRTW 287


>gi|82778187|ref|YP_404536.1| DNA-binding transcriptional activator GcvA [Shigella dysenteriae
           Sd197]
 gi|81242335|gb|ABB63045.1| positive regulator of gcv operon [Shigella dysenteriae Sd197]
          Length = 305

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 130/295 (44%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + ++
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRG-NWLGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPED 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
           L KH L     L      D+    T  R +G   I+  Q    +    ++Q  + G G+A
Sbjct: 186 LAKHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVA 237

Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 238 LANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|110635630|ref|YP_675838.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286614|gb|ABG64673.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 298

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 18/294 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F  + R+GSF  A+ +L +S  ++S  +  LE  +G+KL  R  R ++LTE G++L
Sbjct: 7   ELQTFVSIVRTGSFRAASVELEVSPPAVSLSLKQLEDRLGLKLINRSTRSMSLTEAGARL 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   S     ++     L E   +P+G LRIA +    +  +   +  F+  YP+++++L
Sbjct: 67  YEDLSPALSNIDHAVNNLAELRDRPAGTLRIAASRLAARLYMASLVHGFVRRYPEMKVEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYLKNCREP 180
             D+   D+S D  D  +RL       +++  ++V I +         A P Y  +   P
Sbjct: 127 WADDNLTDLSEDNFDAGVRL------GAIVDDRMVAIPVGPKARFVVVATPAYWHDHPVP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              ++L  H  + F    P     + W+    D  I         VN      +    G 
Sbjct: 181 SHPRDLLAHECVEF--RFPTSRRPYQWMFRRGDEDISIEVNGSTIVNDMEVAAELVRNGL 238

Query: 240 GIA-LLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  LL D + +  ++  LV  +E  + P    Y  YP     +   +AF++F+
Sbjct: 239 GVGYLLYDQVAEEIESGRLVMALESWLPPRAGHYLYYPSNRLVSRGFQAFKDFV 292


>gi|323138734|ref|ZP_08073799.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC
           49242]
 gi|322395981|gb|EFX98517.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC
           49242]
          Length = 303

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 132/305 (43%), Gaps = 23/305 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  AA  L   +S +SR+I  LE  +G++L +R  R   +TE G
Sbjct: 3   DLNDLYFFVQVVDHGGFAPAARALGAPKSRLSRRILVLEERLGVRLIHRSTRSFAVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R    +  +    Q  +  S  +P G +R++    L    +   +  F+  +P + 
Sbjct: 63  QEYYRHCVAMLVEANAAQDAIDRSRAEPQGMVRLSCPPGLVCFKVADIVARFMARHPQVL 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   ++ +D+  +  D AIR+R  P+  S L+ R L     H  A+P        P +
Sbjct: 123 VHLESTSRRVDVIAEGFDIAIRVRFPPLDESDLVMRVLAGSPQHLVASPAIFDGNPLPRT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235
             +L     I FG   P       WL   + P G+       PR   L  + ++ +    
Sbjct: 183 PADLADLPSIDFG---PPQRPHQWWL---EGPDGDSALVTQHPR---LITDDFVQMRSAA 233

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G GIA LPD++V D+     LV ++      +  ++  +P      G L A R F+  
Sbjct: 234 LQGIGIAQLPDFVVDDDLAAGALVEVLPQWRPRAGIIHAVFP---SRRGLLPAVRGFLDF 290

Query: 293 KARDW 297
            A+++
Sbjct: 291 LAKEF 295


>gi|218682247|ref|ZP_03529848.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 894]
          Length = 304

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 130/293 (44%), Gaps = 20/293 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VAR  +F+ AAE+L L+Q +ISRQI+ LE ++G+ LF R  RG+ LTE G+ 
Sbjct: 13  SALAAFDSVARLSTFSAAAEELSLTQGAISRQIAALEEQLGVLLFERTGRGVILTEAGAD 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R  +    ++ +    L   + + + +L +A     G   L   + +F+  +P+I + 
Sbjct: 73  YARAIASALAEIRSA--SLHAMTKQHNDQLNVAILPTFGTRWLMPRIPQFVARHPEITLN 130

Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
                   D   D  D AI + +P     +S+ L++  +  +     A+P +L +    L
Sbjct: 131 FATRIGVFDFDRDDIDMAIHIGQPDWPGAESTFLMEEMVAPV-----ASPPFL-SSHPIL 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +  L+            F  L     P        ++   + ++ Q C+ G G+
Sbjct: 185 KAEDLLRLPLLQMASRPGAWGHFFESLQVSGTP-----SQAMRFEQFSNVAQACIAGLGL 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           AL+P +++     N  LV+     +      Y   P + K+   + AFR ++ 
Sbjct: 240 ALMPLFLIDSELANGQLVQAFPHQVKSPSAYYAVAPLSRKDFRPVAAFRAWLL 292


>gi|220915073|ref|YP_002490381.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
 gi|219952824|gb|ACL63214.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 301

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 128/285 (44%), Gaps = 11/285 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  G F+ A+  L   +S++SR+I+ LE ++G++L  R      LTE GS      
Sbjct: 10  FAKVAEHGGFSAASRVLDQPKSTLSRRIAALERDLGVRLIQRTNNRFALTEIGSAYVAHC 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  + +  Q  ++    +P+G LR++  I L Q  +   +  F++ +P + ++ I  N
Sbjct: 70  QAMIAEAQAAQQVVENWRAEPTGTLRVSCPIALAQARVSEIVARFMIAHPGVSVRFIATN 129

Query: 131 KDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  +  D A+R+R  P++ S L+ R L         AP  L     P + + L   
Sbjct: 130 RTVDLIEEGIDVALRVRFPPLEESDLVMRVLSDSTQAIVGAPALLDRLGRPSAPEALAGM 189

Query: 190 NLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           + +   DLI +       L   D R +  P    L  +  L++ Q    G G+  LP Y+
Sbjct: 190 DAL---DLIRQDRNHVWHLTHQDGRSVAIPFAPRLVSDDMLTLRQAAREGVGVVRLPTYL 246

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V+   D  +L  ++      S  ++   P      G  +A R F+
Sbjct: 247 VQAALDKGDLEAVLPAWTPRSGIIHAVLP---SRRGLARATRLFV 288


>gi|152994371|ref|YP_001339206.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835295|gb|ABR69271.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 299

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 2/148 (1%)

Query: 1   MSFDW--DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M F++  D +R F  VA+ GSF  A+  L +  S++SR+++ LE ++ I+L  R A  + 
Sbjct: 1   MKFNYSLDDMRCFCAVAQYGSFKQASTALEIPLSTLSRRVAKLEEDLAIRLLNRDAHRVQ 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT  G + +  +  ++ +L    + L +   +  G +RI+  ++ G  +L  +   FL+ 
Sbjct: 61  LTHTGQRYYERSLPLFEELNDVAVCLLQDKTQAKGTIRISAPVNFGVQVLAQHFNAFLIE 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRL 146
           YPDI + L L N++IDI  +  D A R+
Sbjct: 121 YPDIHLDLRLSNQNIDIEEEAIDIAFRV 148


>gi|84499913|ref|ZP_00998179.1| probable transcriptional regulator [Oceanicola batsensis HTCC2597]
 gi|84391847|gb|EAQ04115.1| probable transcriptional regulator [Oceanicola batsensis HTCC2597]
          Length = 297

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 120/263 (45%), Gaps = 18/263 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F    R  SF  AAE+L ++Q ++++Q+ GLE  +G++LF R  RGL+ TE+G  
Sbjct: 11  NGLRAFSAAGRHLSFRAAAEELGVTQGAVAQQVRGLEDHLGLRLFLREPRGLSFTEEGRS 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   S  + +L      L ++   PS ++ I+ T       L   L EF   +P I ++
Sbjct: 71  YHAAVSRAFSQLMDATGALLDT---PS-RVTISVTPTFASKWLIPRLAEFTEAHPGIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    + +    D  D A+R  +P   +SL    L    + A  +PH L     P+    
Sbjct: 127 ITATERVMSFHADGIDIAVRQGRPPFGASLRAELLFPQEIIAVCSPH-LVAPEGPVDAAA 185

Query: 186 LDKHNLITFG-DLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +  L+    DL P+ +   F  + T+ R         LQ +     +   + G G+AL
Sbjct: 186 LSRLTLLHDAHDLWPQFLGMAFGTVPTLPR--------GLQFSQTTLSLDAALAGQGVAL 237

Query: 244 LPDYIVK---DNPNLVRIMEDVI 263
              ++V+   D   LVR ++  +
Sbjct: 238 ASRFLVQRDLDAGRLVRAVQAAL 260


>gi|212634198|ref|YP_002310723.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212555682|gb|ACJ28136.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 301

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 135/295 (45%), Gaps = 26/295 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +  +GSF+ AA++L +  +++SR+++ LET +  +L  R+ R L LTE+G  L +  
Sbjct: 15  FVHLVNAGSFSQAAKELEMPIATVSRKLTKLETLLDKQLLMRNTRKLRLTEEGIALFQQY 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  + ++ +    ++   P G LRIA  + +   +    + EF   YPDIQ+ ++ +N
Sbjct: 75  QAIVSQFDSIRGAAVDT---PEGTLRIAAPVSIISMIFINAINEFCEKYPDIQLHIVQNN 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             ID+  +  D AI +      SS I   L  ++   +A+P Y+ +        ELD H 
Sbjct: 132 NVIDLIDEGVDVAI-VGGTQPDSSWISSSLGVLNYGLFASPGYIASAAPFTHPSELDNHA 190

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYCVLGSGIAL 243
           LI       K    FNW  T+  P GE        +++  ++N     ++  V   GI  
Sbjct: 191 LI-------KVWPLFNW--TLKHPSGESFYYDGPAKLTLSELN---GAVRAAVDNGGILY 238

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            P   VK+  N   L  ++ + I     +   Y +      K+K F  F+  KA 
Sbjct: 239 GPALFVKNELNSGQLQSLLPEWIGEKRRISILYHQRSHQPLKVKLFIEFMHSKAE 293


>gi|187479279|ref|YP_787304.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115423866|emb|CAJ50417.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 311

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 17/296 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VA+  SF+ AA+ LH+  S++SR+IS LE  +G++L  R+ R L LT+ GS 
Sbjct: 9   NDIALFVEVAKRKSFSLAAKALHMPTSTLSRRISQLERAIGLRLINRNTRRLELTDAGSI 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R    +  +    Q +L+  S KP G+L I+    L   LL  +L+ F+  YPD++ +
Sbjct: 69  YLRRCQGLIDEARLAQEQLRSLSSKPKGRLSISMPYSLAIWLLPNSLRAFMDAYPDLECE 128

Query: 126 LILDNKDI-DISMDYADCAIRL----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
             L+ K I D   D  D  +R     ++    +S +  +++ +  + YA+  YL+    P
Sbjct: 129 FDLNLKSIADSHGDPFDIMLRFGCDSQELTDDNSPLVDEIIRLEGYLYASCEYLERYGMP 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLGS 239
            +  +L +H  +     I +     +W  T         +S     + +S+M     LG 
Sbjct: 189 KTPADLSQHQCLRTA--IDEAHS--SWTLTQGTQTERIPVSGHLAGNNISVMGSLSGLGM 244

Query: 240 GIALLP-----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA LP     D +++ +  L R++ D      +++  +P+ +    K +AF ++I
Sbjct: 245 GIARLPYCQALDAVIEQH-ALKRVLPDWQVNPISIFGHFPQQIL-PAKTRAFMDYI 298


>gi|325523209|gb|EGD01586.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 290

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 134/286 (46%), Gaps = 13/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F +VAR  SFT AAEQL ++Q ++SRQI  LE   G  LF RHA+GLTLT +G +L 
Sbjct: 10  LQIFSMVARHRSFTRAAEQLCITQGAVSRQIQTLEAHYGFPLFRRHAKGLTLTAEGEQLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V +E + ++E   I L+ +  +    L++ T +      +   +  F   +PD+ +Q+ 
Sbjct: 70  PVVNESFARIE--DISLKLTRQRTDLALKVPTCV---MGWMLPRIMRFQGEHPDLHVQIT 124

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D S +  D AI +      + +    L    +    AP  L+      +I +L
Sbjct: 125 TAWQHVVDFSSEPFDAAI-VYGTSPGAGVFALPLFDERLTPVCAPG-LRQASPLDAIDDL 182

Query: 187 DKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H L+  T      +   D     T+D   G P    L + +  ++  + V    + L+
Sbjct: 183 ARHTLLHPTRDHRDWRAWLDHAGARTIDAERG-PTFDTLDLATNAAMQGFGVAIGDVTLV 241

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D +      L R  + V+      +F YPE   +  K++AF ++I
Sbjct: 242 DDDVSAR--RLERPFDIVLETGARYFFVYPEHSASQQKIRAFSDWI 285


>gi|89054899|ref|YP_510350.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864448|gb|ABD55325.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 294

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 121/297 (40%), Gaps = 14/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     ++  F  V   GSF   A     + S +SR ++ LE   G KLF+R  R L+LT
Sbjct: 1   MPHPAPEIAAFVRVVELGSFASVASDTGYTSSGVSRMVTRLEENFGTKLFFRSTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G         +   +E    +L +++  P G +R+        + L   L +F   YP
Sbjct: 61  PDGEAFLPRARSILDAIEAAGADLSDAAETPRGHIRLNCGTAFANHKLAPRLADFATRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + + + ++ +D     AD  IR+   +  S+LI   L ++     A+P YL    EP
Sbjct: 121 HISLSISVTDQRVDPVARQADVTIRVGD-LADSTLIAIPLGSVARVIAASPAYLAKHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              + L KHN +       +    F       +PI       L  +S  +++   + G+G
Sbjct: 180 QIARHLLKHNCLLLNGFPHQAAWPF---LEKGQPITVSVKGTLTSDSAETLLHAAISGAG 236

Query: 241 IALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L D++  D        P L R  + V  P   +    P    +  +++A  NF+
Sbjct: 237 IIRLGDFLGADALASGQLVPILTRTHDPVRQP---ITALVPPGRHSVPRVRALLNFL 290


>gi|1934654|gb|AAB80905.1| LysR family regulatory protein YrdL [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 296

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 130/267 (48%), Gaps = 19/267 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF   AR GS + AA  L+ +QS+++ +I  LE ++  KLFYRH+RG+TLT  G  L 
Sbjct: 6   LQVFLTTAREGSISKAALTLNYAQSNVTNKIQQLENDLQTKLFYRHSRGITLTPPGQILV 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++ H +E  +  + ESS  PSG LRI +        L   L  +  LYP++ + L+
Sbjct: 66  SYSEKILHTIEEARAAMGESSA-PSGPLRIGSMETTAAVWLPQLLAHYNNLYPNVDLNLV 124

Query: 128 LD--NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLSIQ 184
                + I   + Y      +  PI+   L+Q K++   M    +A H + +     SIQ
Sbjct: 125 TGPTEQQIQAVLHYELNGAFISGPIEHPDLVQEKVLDEEMVLVTSASHPVIS-----SIQ 179

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY--LSIMQYCV-LGSGI 241
           ++    ++ F        +  ++ A ++  + E  +  +++  +  L  +  CV  G GI
Sbjct: 180 DVQTQTMVVF-------RKGCSYRAKLNHILQEEGLLPIKLMEFGILEAIIGCVSAGLGI 232

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFT 268
           +LLP  I+  +    RI    I+  ++
Sbjct: 233 SLLPRSIIASHEKEGRIRSHTISDKYS 259


>gi|152979199|ref|YP_001344828.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150840922|gb|ABR74893.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 299

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 95/190 (50%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L VF+ +A  G    A+ +L ++  S+S+ +  LE  +G+ LF R  R + LTE G 
Sbjct: 6   YGYLTVFHAIAEQGGIAAASRKLEIAPPSVSQSLKLLEKHIGLPLFNRTTRKMELTEAGL 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T ++   LE     +Q+    P+G +RI       Q +L+ +  EF  LYP I++
Sbjct: 66  RLLENTEQLMRSLEYAVESVQDLGEIPTGTVRITVPRFAYQLILKPHFAEFCRLYPHIRL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  +DI     D  IR    I+ + + ++ L   H   Y +  Y +    PL+ Q
Sbjct: 126 EISVHDGTVDILQQGFDLGIRFGDKIEQNMVARKLLEPFHEGLYVSRSYAEQYGIPLTPQ 185

Query: 185 ELDKHNLITF 194
           +L +H LI +
Sbjct: 186 DLHRHFLIGY 195


>gi|311280115|ref|YP_003942346.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308749310|gb|ADO49062.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 305

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 140/300 (46%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++IS LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAVVAEELGVSPAFVSKRISLLEEMLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    EL        G LRI +++  G+ ++   L      YP ++++
Sbjct: 68  IYEWAQSILQDVDQMIDELSNQRQVTQGTLRIISSMGFGRRIVAPALSALSRQYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ ID+  +  D  IR+   I + +LI RKL   H    A+  +L     P  + +
Sbjct: 128 FDVEDRIIDLVNEGVDLDIRVGDEI-APNLIARKLADNHRILCASADFLAKHGTPKQLSD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISCLQVNSYLS------IMQ 233
           L          ++P C+     +   D P G         +  ++V   LS      + Q
Sbjct: 187 L---------PVLP-CLV----IKERDHPFGVWQLHSREGVHSIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G G+AL   + V +N    +L+ I+ +   P+  ++  Y   L  + K++    F+
Sbjct: 233 WCLDGQGVALRSWWDVSENIASGHLIHILPEYYQPA-NIWAVYVSRLATSAKIRTTVEFL 291


>gi|229592194|ref|YP_002874313.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
 gi|229364060|emb|CAY51645.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
          Length = 298

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 137/289 (47%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V    SFT A E L L +S++S  +  LE  +G +L  R  R +  T+ G  L+
Sbjct: 7   LRTFVRVTELSSFTQAGESLGLPRSTVSEHVQALEELLGARLLQRTTRTVQATQDGRVLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++   +E  +   ++   + SG++R+     + + L+   L  F+  +P I++++ 
Sbjct: 67  ERSKDLLSHMEELEGLFRQDEAQLSGRIRVDMPNVMARELILPRLPSFMDAHPLIELEIS 126

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++ +D+  +  DC +R+  +P Q  +++ R+L ++ M   A+  YL+    P ++ +L
Sbjct: 127 TTDRQVDLLAEGFDCVLRVGAQPDQ--TVVARRLCSLPMINCASAAYLQRHGVPETLADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H L+ +   +      F ++    V R     R++   VNS  +    C+ G GI  +
Sbjct: 185 ARHQLVHYVRPLGARSAGFEYVQGNKVQRIAMAGRVT---VNSTDAYKAACLGGFGITQV 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   + D   +  LV ++ D   P+  V   Y        +++ F +++
Sbjct: 242 PALGIGDLLASGELVAVLPDYPAPALDVSLLYAGQRHLPQRVRVFMDWL 290


>gi|332306819|ref|YP_004434670.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174148|gb|AEE23402.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 303

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 97/189 (51%), Gaps = 2/189 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F   A+ GS +  A ++ LS + +S  +  LE ++G+ LF R  R L LT++G +  
Sbjct: 7   LRLFCETAQQGSLSACARKMDLSPAVVSASLKRLEADLGVLLFIRSTRNLRLTQKGEQFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +     L+    E+     + SG ++++   D+G+NLL   L  F+  +P ++++L 
Sbjct: 67  RHCTNALTILDEATTEIHSQDAELSGVIQLSAPSDMGRNLLLPWLDSFMEAHPRVEVRLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186
           L +   D+     D A+R  KP + S  I   +   ++    A+P Y++    P S+Q L
Sbjct: 127 LSDSPADLYSQPVDLALRYGKP-KDSGFIAIPIAAQNVPVLCASPAYIEQFGTPSSLQAL 185

Query: 187 DKHNLITFG 195
            +HN +  G
Sbjct: 186 TQHNCLCHG 194


>gi|325123973|gb|ADY83496.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 300

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 146/300 (48%), Gaps = 20/300 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT++G +
Sbjct: 6   EELVAFIAIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++ ++L   + ELQ+S    +G +RI +      +++   + +F   YP+I+I+
Sbjct: 66  FLVKARKILNELNAAEEELQKSDQGTAGLIRIDSATPFVLHVIAPLMHKFRECYPNIEIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ ID+     D A R  + +  SSL  + +    +   A+P YL+    P   ++
Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLFIVASPEYLEIKGTPTQPEQ 184

Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L++H+LI F      +  P  + D  + A           S ++ +S  ++ Q  + G G
Sbjct: 185 LEQHDLIGFTRPAYINSWPIKVGDEYFFAQ----------SKIKASSGETVRQLTIRGHG 234

Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ I KD     L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDIEEGRLIALFEDQIEYQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|307725551|ref|YP_003908764.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586076|gb|ADN59473.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 309

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 111/255 (43%), Gaps = 14/255 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+  LR+F  + R  SF  AA +L  + S++S  +  LE  +G KL  R +R ++ TE 
Sbjct: 7   IDFADLRLFLAIVRCRSFRLAAIELGQTPSAVSHAMRRLEDRLGAKLLNRTSRAVSPTEA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     E ++++ +     +       G LR+    D    L+   L EF  L P++
Sbjct: 67  GLDLASRLEEGFNQIGSALESFEAPGTARLGSLRLNVFADAAHLLIAPALPEFARLCPEV 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA-PHYLKNCREPL 181
           Q+ +++DN+ IDI  +  D  IR    +    +I   L        AA P YLK    P 
Sbjct: 127 QLTVVVDNRPIDIVAEGYDAGIRYGHHV-PEDMIAVPLTGPQRWVMAASPAYLKKHGTPR 185

Query: 182 SIQELDKHNLIT--FGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + EL  HN +    GD        + W   +A    PI  P    + +N   + +  C 
Sbjct: 186 HVSELADHNCLQLLLGD-----NSSYRWEVNVAGKKSPIRVP--GSITINDTATTISACK 238

Query: 237 LGSGIALLPDYIVKD 251
            G GIA L +  + D
Sbjct: 239 AGMGIAYLLEARIAD 253


>gi|86356767|ref|YP_468659.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280869|gb|ABC89932.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 288

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 123/260 (47%), Gaps = 19/260 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DWD LR F  +A++G+   AA+QL +  +++SR+IS LE  +G KL  R  R ++L  
Sbjct: 8   NIDWDDLRHFLALAQTGTLLGAAKQLGVEHATVSRRISSLEASLGRKLVDRRGRRISLNR 67

Query: 62  QGSKLHRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            G ++ R  + V   + T  IE   + S+ +  G +RI+    L   LL   +      +
Sbjct: 68  DGEQVARHAALV--AVHTAAIEQLGRSSTTELRGHVRISAPPALSSVLLAQPIAAVRRDH 125

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P ++I L+ + +   ++   AD A+R+ +P +    I  KL     H YA+  YL+    
Sbjct: 126 PGVEITLVGEKRLASLNRREADIAVRMSRPEEGDYSIV-KLGETSFHLYASRTYLETV-- 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                       I + + +    +    +     RPI   R S L+  + +       LG
Sbjct: 183 -----PPKDWTFIGYDETMNASPQQLRLVELAAGRPIA-VRSSVLEFQAAI-----ANLG 231

Query: 239 SGIALLPDYIVKDNPNLVRI 258
           +G+ +LPD++V ++  L RI
Sbjct: 232 AGVVMLPDFVVAESSGLQRI 251


>gi|331014422|gb|EGH94478.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 301

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 136/301 (45%), Gaps = 33/301 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  +AR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++TE G +
Sbjct: 7   DDLNVFIHIARRSSFVGAANELGMSAAYVSKRVKLLEQNMGVVLLHRSTRQVSITEDGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++  LG+  +   L E    YP + I+
Sbjct: 67  VYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGLGRRFVAPALSELAARYPKLDIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L +      A+P Y++    PLS+ E
Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNDI-APHLRARHLASNWRVLCASPAYVQQHGVPLSLAE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPI------GEPRISCLQVNSYLSI------MQ 233
           L  H+ +   +               DRP       G      ++V   LS        Q
Sbjct: 186 LANHDCLVIKER--------------DRPFGIWHLNGSQGAETVKVTGSLSTNHGEIARQ 231

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
           +C+ G G+ L   + V+ +    R++   + P +     ++  +   L ++ K++    F
Sbjct: 232 WCLDGRGVLLRSLWDVRTDLAEGRLVP--VLPEYRQDADIWAVHTSPLMSSAKVRVTVEF 289

Query: 290 I 290
           +
Sbjct: 290 L 290


>gi|317402314|gb|EFV82891.1| hypothetical protein HMPREF0005_00148 [Achromobacter xylosoxidans
           C54]
          Length = 303

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 124/260 (47%), Gaps = 28/260 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  V +S SF+ AAE L  S+S+++++I+ LE    ++L  R+ + ++LTE G  
Sbjct: 7   DCLEVFVEVGKSLSFSKAAESLASSRSAVTKKIAWLEAHFEVQLLNRNTKHVSLTESGRL 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   L   +  +Q   +  SG++RI T    G   +   +++FL  YP I++ 
Sbjct: 67  LLENADTLALSLMNLKELVQGPVLTASGRIRIGTPPSFGTVHMVPAIQDFLARYPAIKVS 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L++D+   D+  +  D ++R+   ++ S+ I  K+  +     A   YL     P   Q+
Sbjct: 127 LLIDDGRGDLIAENLDLSVRIAPRLKDSNQIAYKITLVPQVVVATRDYLARHGRPGKPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-------------SIM 232
           L++HN          C+     + ++  P G+   +  Q N+++             ++M
Sbjct: 187 LERHN----------CL-----VHSLKAPTGQWSFTDAQSNTHVVRVAGSFNSNLGEALM 231

Query: 233 QYCVLGSGIALLPDYIVKDN 252
                G G+++ P Y+V+ +
Sbjct: 232 NMTKRGGGVSMHPRYMVEQD 251


>gi|149911159|ref|ZP_01899784.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149805760|gb|EDM65757.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 311

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  + +S     AA++L +  ++++R++  LE +VG KL +R AR   LT +G  
Sbjct: 16  DDIVLFIHIVKSQGLAGAAKKLKIPAATVTRRLKKLEEKVGCKLIHRSARQFRLTTEGQV 75

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +++  + E+   EL   +    G L +    ++    LQ    +F+  +P+IQ+ 
Sbjct: 76  YFESFTDLVERFESISKELSSEANSLEGSLTVLAPTNISIGYLQPMWSQFIGDHPEIQLN 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+N + D+  ++AD A+R+  P + SSL Q K+ +I     A+  YL       S+++
Sbjct: 136 LKLNNDNKDMVEEHADIALRI-GPQRDSSLYQIKVGSIPSVLVASHKYLAKSAPLNSLED 194

Query: 186 LDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  IT   +   K     + L     P      S L+VN      ++   G GIALL
Sbjct: 195 LKHHKCITVSHMPTWKFQHSKSKLKQTINP-----ESSLKVNDISIASKFAKDGHGIALL 249

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V +      L   + D   P+  ++  +P     + K K  +  I
Sbjct: 250 PPSEVLEYLHCEQLFMPLPDWQGPARDIFLIWPSGKLLSAKAKCLKEHI 298


>gi|313500564|gb|ADR61930.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 298

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 7/248 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L+VF  V   GS + AAEQ+  + S++SR +S LE ++G  L  R  R + LTE+G  
Sbjct: 6   EELQVFVAVIDCGSISAAAEQMGQTPSAVSRTLSRLEGKLGTTLVNRTTRRMDLTEEGRY 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               +  +  +++  +  L  +   P+G+LRI        + +   + EF   YP I+++
Sbjct: 66  FLERSRLILQQMDEMEERLSMNRQTPTGRLRINAAAPFMLHAILPWIGEFRRQYPGIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D+  ID+     D AIR+ + +  SSL  R L    +   A+P YL+    P  ++E
Sbjct: 126 LNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARSLGCSPVQVLASPAYLEQHGTPRQVEE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+ F    P+ +  +    A  DR    P    L  +S  ++ Q  + G GI  L
Sbjct: 185 LADHCLLGFSQ--PESLNHWPLRHAQGDRWSIRP---ALVASSGETLRQLALAGEGIVSL 239

Query: 245 PDYIVKDN 252
             ++  ++
Sbjct: 240 SHFMTHED 247


>gi|226952138|ref|ZP_03822602.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|226837123|gb|EEH69506.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
          Length = 306

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 12/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA   SFT AA+   L+ +++SR I+ LE  +  +LF R  R + LT  G    
Sbjct: 13  VELFCAVAEHKSFTQAAKIAGLTPAAVSRSIARLEQRLNTQLFVRSTRQVRLTHAGEIYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +   ++   +  L+  S + +G++RI+     G   +   +  F   YP+IQI L 
Sbjct: 73  QQCQQGLTQIIEAEQLLRNQSQQLNGRIRISLPTPYGHYRVLPLIPIFKQTYPNIQIDLQ 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L NK++D   +  D AIR R   + S+LI R L    +   AA  YL +   P  I  LD
Sbjct: 133 LTNKNVDFIAEGFDLAIRGRY-FKDSNLIVRTLEHAELVVVAAASYLHSHTIPTDIAALD 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H  + F  ++P   +   WL  V+  I E      + CL  +  L  +     G+G+  
Sbjct: 192 QHECLQF--ILPSTGKSVPWLFKVNNQIHEYTTKGSLHCL--DDILGTVTLAKHGAGLLQ 247

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +IV     N   V ++      S      YP     +  ++ F +F+
Sbjct: 248 TYRFIVAQDIQNGQFVELLHPFAGASRPFSLVYPSQKYASAHIRTFIDFL 297


>gi|261342230|ref|ZP_05970088.1| glycine cleavage system transcriptional activator [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315565|gb|EFC54503.1| glycine cleavage system transcriptional activator [Enterobacter
           cancerogenus ATCC 35316]
          Length = 305

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   E++ +L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YFQDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIQWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPMLLTGEKALKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
             +L KH L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PADLAKHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILSKA 292


>gi|78063441|ref|YP_373349.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971326|gb|ABB12705.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 303

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 95/184 (51%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  SGSF  AA +L +++S++++ ++ LE  +G +L  R  R L LT++G   +   
Sbjct: 11  FVDVVESGSFAAAALRLGVTRSAVAKVVARLERRLGTRLLQRTTRQLGLTDEGLVYYEQC 70

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  T+  L     +P+G+LR++  +  G+  +   ++  +  +P ++I +   +
Sbjct: 71  RRLLAELGETEAALDAGQREPAGRLRVSVPVLFGRQCVAPVMRRLVERHPRLEIDVSFSD 130

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D+  D  D A+R+ +   +S+L+ RKL    M   A+P YL+    P  +  L  H 
Sbjct: 131 RVADLVNDGFDIAVRIGELADTSALVGRKLGVQRMGICASPAYLERHGRPAGLDALASHV 190

Query: 191 LITF 194
            I +
Sbjct: 191 GIAY 194


>gi|50122555|ref|YP_051722.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613081|emb|CAG76532.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 305

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 1/193 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V    SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+
Sbjct: 4   ALDFNTLKVFTAVVERESFVGASKVLEMPTSNVSRCISQLEEKLNLQLIERSTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   YPD
Sbjct: 64  AGHLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVVADFACQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  + +    +   D  D AI + R  +  S  I R LVTI     AAP  ++    P
Sbjct: 124 LEISCVTNLSGFESLRDDLDLAIIITRGQMDDSDYIARHLVTIPCTIVAAPSVIQRYGTP 183

Query: 181 LSIQELDKHNLIT 193
             IQ+ ++   IT
Sbjct: 184 SHIQQFEELPCIT 196


>gi|330816315|ref|YP_004360020.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327368708|gb|AEA60064.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 310

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 27/294 (9%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V  +GS   AA  L +S +++S+ ++ LE  +G++L  R  R + LTE G+  +     +
Sbjct: 15  VVENGSIAAAARALGMSAAAVSQNLARLEAHLGVRLLSRTTRSMALTESGTHYYEKVRHI 74

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              L+  Q      ++ P G L +ATT   G++LL   +  F   YP I ++LI  ++ I
Sbjct: 75  PRDLDLAQAA-ATEALAPRGPLCVATTAAFGRHLLAPLMPAFQAAYPRIAVELISTDRRI 133

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI- 192
           D  ++  D ++R+   +    L+ R++ +      A+P YL     P + ++L++H  + 
Sbjct: 134 DHRLEGVDLSLRIAAQLD-ERLVARRIASRPFVFCASPAYLARAGVPAAPEDLEEHACLA 192

Query: 193 ----TFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               T G L+P     +   + A V+     P   C  ++    + Q  V G GIA L  
Sbjct: 193 LRYPTDGRLLPWGFVRDGRRFEAAVN-----PAFICDDID---MLAQIAVSGGGIARLAS 244

Query: 247 YIVK---DNPNLVRIMED-------VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ +   D   L+ + E          +    +Y C  E      K++AF +F+
Sbjct: 245 FVAQPLIDAGKLLPLFEARSRSRAWAESEPMEIYACVAERAALNAKVRAFIDFV 298


>gi|167566565|ref|ZP_02359481.1| Transcriptional regulator [Burkholderia oklahomensis EO147]
          Length = 301

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 138/280 (49%), Gaps = 16/280 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQTFATVVDTGSITAAAQQLELTVSATSRTLGRLEKKLQTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  + ++     +PSG+LR+        +++   +  +   YP
Sbjct: 61  EEGRAFLQNARAIIESVERAEEQMAARRERPSGRLRVDAATPFMLHVVVPLVNGYRTRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +++ ID+     D AIR+ + ++ S+L  R + +  +   A+P YL     P
Sbjct: 121 HVELELNSNDEIIDLLERRTDVAIRIGR-LKDSTLHSRAIGSSRLRILASPQYLDVHGNP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RIS-CLQVNSYLSIMQYCVLG 238
             + +LDKH L+ F        E  N    + R  GEP RI+  L  +S  ++ Q  + G
Sbjct: 180 RRVDDLDKHTLLGFNQ-----PESLNQWPVLGRD-GEPYRIALALASSSGETLRQLALQG 233

Query: 239 SGIALLPDYIV---KDNPNLVRIM----EDVITPSFTVYF 271
           +GI  L D++    +D   LV+++     +V+ P   VY+
Sbjct: 234 AGIVCLSDFMTARDRDEGRLVQLLPRQTREVLQPIHAVYY 273


>gi|119896874|ref|YP_932087.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119669287|emb|CAL93200.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 321

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 128/300 (42%), Gaps = 34/300 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    +  +GS + AA+QL ++Q ++SR++  LE  +G+KL  R   G+ LT +G + +
Sbjct: 18  LRTLVRIVEAGSLSAAAQQLGITQPTVSRRLQALERALGLKLLQRSTHGMKLTGEGERCY 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  + +  + +L  +  +P G LR+      GQ  L   L ++L  YP++ ++ +
Sbjct: 78  AHARDLIERWQAMETDLHGARDEPRGNLRVLVPHAFGQGQLIAPLVDYLRRYPEVAVEWL 137

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-------- 179
           L ++  D   +  DCAI++ + +    ++  +L  +     AAP                
Sbjct: 138 LHDRRPDFLAEGIDCAIQVGE-VADPGVVAVRLAEVPRIVVAAPGAWGEGAPPAAPEALA 196

Query: 180 -----PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQ 233
                 L     D+  L+  GD                R PI  PR+S    +S  ++  
Sbjct: 197 AMPWLALRTYYRDEVLLVRSGD------------GERSRFPI-RPRLS---TDSLYALRT 240

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G G  +   ++V D+     L  ++ +   P   VY  YP A     KL+ F   +
Sbjct: 241 AALTGLGACVTSAWVVADDVAGGKLCHLLPEWEAPPLPVYLVYPHARHYPAKLRVFNAMM 300


>gi|241203613|ref|YP_002974709.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857503|gb|ACS55170.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 306

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 100/196 (51%), Gaps = 1/196 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D++R F  VA  G+ +  A +L + QS+++R ++ LE  VG+ L  R  R +TLT+
Sbjct: 5   GLSLDRMRTFVRVAERGNLSMVARELGVGQSTVTRHLNELEEAVGVPLLSRTTRRVTLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS+ +    ++   +E    E +++   P+G +R++ T  LG   +   + +F   +PD
Sbjct: 65  EGSRYYSNCLQILRLVEQAAEEARDARRAPAGAVRLSCTAALGVMHITRLIFDFQDRHPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L L ++ ID+  +  D A+RL  P+  S++    L   H     AP YL     P 
Sbjct: 125 IRVDLNLTDERIDLVREGVDVALRL-GPLADSAMKLHALGESHRLLVGAPTYLSVHGRPQ 183

Query: 182 SIQELDKHNLITFGDL 197
              +L ++  +   ++
Sbjct: 184 HPADLSRYETVVMSNV 199


>gi|116249212|ref|YP_765053.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253862|emb|CAK12257.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 298

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 120/274 (43%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ ++R F  VA+  SFT AA +L +++S++S  IS LE  +G++L  R  R +  T  G
Sbjct: 5   EFTEMRAFLEVAQERSFTRAASKLGVTRSALSHTISALEARLGVRLLSRTTRDVAPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L       +  +      L     KPSG +R+    D  + + +  L  FL  YPDI 
Sbjct: 65  ARLMESIQPHFESIAAGISALGALRDKPSGTVRLVCPDDAVELVFRSRLPAFLRDYPDIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI+DN   +I     D  +RL + I    +  R    I      +  Y      P + 
Sbjct: 125 VELIVDNGFTNIVERQFDAGVRLGEAIARDMVAVRIGPDISYAVVGSTDYFAARTVPSTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242
            +L  HN +     +P     + W    D      R+    V S +       L G+G++
Sbjct: 185 HDLTDHNCVNL--RLPTSGALYAWEFEKDGREFSVRVEGQLVMSNIGPAINAALDGAGLS 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +P  +++   D+  L  ++ D   P+F  Y  Y
Sbjct: 243 YVPRDLIRQYCDSGQLHEVLAD-WAPTFQGYHLY 275


>gi|239820086|ref|YP_002947271.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239804939|gb|ACS22005.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 347

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 136/297 (45%), Gaps = 21/297 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG----SK 65
            F  V   GSF  AA++L + +S++SR +  LE ++ ++LF R  R  TLT +G    + 
Sbjct: 34  AFIAVVTEGSFARAADRLGIGRSAVSRSVQKLEDQLNVRLFLRTTRSTTLTREGDLFYAN 93

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H     +   +E  + +L++    P G LRI   +  G+ ++   L EF   YP++ I 
Sbjct: 94  CHTGVDRIVQAVEEMR-DLRQG--PPRGHLRINAAVGFGRRVVAPLLGEFRATYPEVTID 150

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L++K  D + D  D A R  + ++ + +I ++++ + +   A+P Y      P S++ 
Sbjct: 151 LLLNDKPTDFTSDRVDIAFRNGR-MEDAQIIAKQIIPMQLLLCASPAYQVAHGLPDSMEA 209

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGI 241
           L +H  I F     +    F W   V    G PR     + L  N    ++Q  + G GI
Sbjct: 210 LAQHECINFRFSSGRI---FEWEFKVG---GHPRKLVPQAKLTYNDADLVLQAVLDGHGI 263

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A LP Y+  +      LV  +          Y CY        +++ F +F+  K R
Sbjct: 264 AQLPGYLACEALRMGALVPCLTQYAPDDSGHYICYLSRQHLPSRMRVFIDFMTSKIR 320


>gi|170745469|ref|YP_001766926.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659070|gb|ACB28124.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 309

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 127/285 (44%), Gaps = 8/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F   A +GSF+ A   L LS S +S +I  LE  +G  L  R  R ++LTE G  
Sbjct: 5   ESIRIFLRSAETGSFSAAGRSLRLSPSVVSYRIQTLEEHLGCLLLTRTTRRMSLTEAGRI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +E  +  ++ +   P G L++   + LG+ ++   +  F   + +  ++
Sbjct: 65  FYDRCLDITAAVEQAEKSVETAGAVPRGVLKVTAPLGLGRRVVAPLVPRFRARHGETDLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L    +D+  +  D AIRL + ++ S+   RK+  I     AAP YL     P    +
Sbjct: 125 LRLSEHLLDLVQEAVDVAIRLSQ-MRDSTFTLRKVAEIDRVLCAAPAYLAEHPAPAEPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +    L     E F W L      +  P    +  +   ++  + + G GI L 
Sbjct: 184 LLQHDCLL---LRYPGSEQFRWTLVDGQETVTLPVAGHIDADDGDTLTAWALAGEGIVLK 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P + V  +     LV+++E     S T+   YP     + + K F
Sbjct: 241 PLFEVAAHLAEGRLVQVLEHTPPTSVTLGLLYPSRKMLSARTKTF 285


>gi|107027058|ref|YP_624569.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691745|ref|YP_837278.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896432|gb|ABF79596.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649745|gb|ABK10385.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 300

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 132/293 (45%), Gaps = 19/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++++  +   G+FT AA+ L L + ++++ +  LE E+G++L  R  R +++T +G   H
Sbjct: 7   MQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGVRLLNRSTRRVSVTAEGEAFH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++       +    P G+LRI   + L + ++   L +F   YP I++ L 
Sbjct: 67  ARCVQLLAGIDDAFASFPKQRAVPKGRLRIDIALALAKTIVIPALPDFQQRYPQIELVLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D+  +  DC +R+   ++ SS++ R +  + M   A+P Y+     P ++ +L 
Sbjct: 127 ASDQPADLIGEGIDCVVRVGT-LKDSSMVARTVGAVSMATCASPAYIARHGLPRTLDDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGI-- 241
            H  + F     +      W     RP GE       S L  ++  +++   + G GI  
Sbjct: 186 THRAVNF--FTGRNRRVLEW---TFRPHGETIAVKLASSLLTDNSEALLSCGLAGLGIVH 240

Query: 242 ----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               AL P     D+  L+ ++  V      V   YP       K++ F +++
Sbjct: 241 ALRPALQPSI---DSGQLIELLPGVPAVPKPVSVLYPNRAHLPDKVRTFIDWL 290


>gi|326388495|ref|ZP_08210090.1| putative transcription regulator protein, LysR [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207043|gb|EGD57865.1| putative transcription regulator protein, LysR [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 316

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 6/246 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   G F  AA +  L+ SS++RQI  LET +G  L  R  R +++T  G   +
Sbjct: 7   MQAFVAVVDEGGFAPAARRAGLAPSSLTRQIDALETHLGTILLNRSTRRVSMTAAGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +      + E +  P G LR +  I   +  +   +  F+  +P I+++++
Sbjct: 67  ANAVRILDDIAAANRSVSELNGPPRGILRASLPIAFARLHVTPFIPRFMQEFPGIELEIL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ + +     D AIRL   +  SSL+ R+L        A+P YL     P    EL 
Sbjct: 127 VSDEPVSLVEQRIDVAIRLGV-LPPSSLVARRLAPHRRILCASPAYLARAGVPQDPSELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H  +TF         +  W+   D  +   RIS  L+ N   ++ +  V G G+ LL  
Sbjct: 186 RHACLTFT----YADGERGWIYRKDGAVERLRISGPLRANHAEALKEAAVAGMGLTLLAT 241

Query: 247 YIVKDN 252
           +++ + 
Sbjct: 242 WMIGEE 247


>gi|206558788|ref|YP_002229548.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198034825|emb|CAR50693.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 305

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 128/305 (41%), Gaps = 35/305 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G  
Sbjct: 10  NALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGRD 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + ++      +  S    SG L ++ T       L   L +F    PD+ +Q
Sbjct: 70  YLPPVRNAFRQIADASQRV--SGAADSGVLTVSVTPFFASAWLVPRLAQFRQACPDVDLQ 127

Query: 126 LILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  +   D + D  D AIR  L + I    L   +L+T+ + A A+P  +     P + 
Sbjct: 128 VVTSHALADFARDGVDVAIRHGLGRYI---GLCSERLLTVEIVALASPDLVARLGMPATP 184

Query: 184 QEL----------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            EL           K   I FG    + ++DF          G PR      +  L  +Q
Sbjct: 185 AELVGWPQLHDAERKGWHIWFGA---QRIDDF----------GPPRGPAFDDSGLL--LQ 229

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V G G  LLP  +V+    +  LV++ +      F  Y  YP       K+ AFR +I
Sbjct: 230 AIVAGQGAGLLPAAMVRGELASGRLVQLADVAWLDDFAYYLVYPPHHAERPKVAAFRRWI 289

Query: 291 FLKAR 295
              A+
Sbjct: 290 LDAAQ 294


>gi|258626653|ref|ZP_05721479.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258581066|gb|EEW05989.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
          Length = 310

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 15/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G  
Sbjct: 5   NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRNIRLTHEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T      L+    ++  +  + +G+L I+   DLG+NLL   ++EF+ L+P++ ++
Sbjct: 65  FLAKTQSAIATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIEEFISLHPNVTVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+  +  D AIR  KP  S+ +      +      A+P YL      L   +
Sbjct: 125 LELSDSLTDMYTNPVDIAIRYGKPADSNLVAMLLCDSNERVLCASPDYLATHPPILHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + +  ++   + +  W+ + D   GE     +Q N   +    + +  V G GI
Sbjct: 185 LLHHNCLCY--MVSDTLHN-KWILSRD---GETHSVVVQGNPTCNDGEVVHRLAVKGKGI 238

Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A   L D I +D  +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K 
Sbjct: 239 ANKSLMD-ISQDIIDGRLVRILPEWESGPVPIYLVCADRRLITPTIRAFQEFIRGKG 294


>gi|170692405|ref|ZP_02883568.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142835|gb|EDT11000.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 297

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 131/268 (48%), Gaps = 8/268 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VAR  SFT AA +L +SQS++S  I  LE  +G++L  R  R ++ TE G +L + 
Sbjct: 11  VFIAVAREKSFTRAAAKLGVSQSALSHTIRDLEARLGLRLLTRTTRSVSTTEAGEELFQA 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +    +++ +   L +   KP+G +RI  T    + ++   L++ L  YPDI++++ +D
Sbjct: 71  VAPRIEEIDASIAALSDFRDKPAGIIRITATDHPVETVIWPKLRKLLPSYPDIKVEVTVD 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
               +I  +  D  +R    +    +  R    I M    +P Y  N   P + ++L +H
Sbjct: 131 YGLSNIVEERYDIGVRFGDQVAKDMIAVRISPDIPMAIVGSPGYFANRELPKTPEDLLRH 190

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP-DY 247
             I+      K +  + W     +   + R++  + VN+   ++Q  + G G+  +P D 
Sbjct: 191 ECISLRMTTTKAL--YAWELKKGKRETQVRVAGQVTVNTQPQMIQAALDGFGLTFVPEDA 248

Query: 248 IVKD--NPNLVRIMED--VITPSFTVYF 271
           +++   N +L+ ++ D   + P +  Y+
Sbjct: 249 VIQHMRNGHLLSVLRDWCPVWPGYRAYY 276


>gi|163742755|ref|ZP_02150140.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384010|gb|EDQ08394.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 298

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 131/298 (43%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD +RVF  VAR  S + A   L +  +++ R+IS  E  +   LF +  +G  L+
Sbjct: 1   MDPQWDDMRVFLAVARESSLSGAGRILKMDPATVGRRISRFEEALDTPLFVKSPQGYALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L          +   Q  L   S   SG++RI         LL     +     P
Sbjct: 61  AAGDRLLGHAEAAEQAMRAGQEALVGPSDTLSGQIRIGAPDGSANYLLPQVCAKIGAENP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ IQ++   + I++S   AD A+ +  P     L+Q K+    +H   + HYL+     
Sbjct: 121 DLDIQIVALPRVINLSRREADMAVTVSAPTAGQLLVQ-KITDYKLHLVGSRHYLREHPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             +++L  H +I +   IP  + D   ++LA     +G  R++ L  NS    ++    G
Sbjct: 180 EKLEDLKHHKMIGY---IPDMIFDRELDYLAN----LGVERVA-LASNSVSVQIKLAAEG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + + +  D+ +  + +L +++ D I+ + + Y    +  + + +L  F   +    RD
Sbjct: 232 TALCVAHDFTLPSHRSLRKVLTDKISLTRSFYLVRHQGDQRSDRLNRFAQALSKGIRD 289


>gi|118592507|ref|ZP_01549898.1| probable transcriptional regulator [Stappia aggregata IAM 12614]
 gi|118434854|gb|EAV41504.1| probable transcriptional regulator [Stappia aggregata IAM 12614]
          Length = 297

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 121/241 (50%), Gaps = 12/241 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR F   AR  SFT AA++L L+Q++ISRQI  LE E+G++LF R  R + +TE+G +L
Sbjct: 10  RLRPFEAAARYESFTRAADELGLTQTAISRQIGQLEEELGVRLFERRNRAVFVTEEGKRL 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +V  E    + T    ++ ++   +  LR           L   L  F   +P+IQ+QL
Sbjct: 70  GQVVGEALRAIRTEVASIRGTADPDTIVLRCQLCEAF--YWLMPRLSGFHAAHPEIQLQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI--HMHAYAAPHYLKNCREPLSIQ 184
           +   + +  + +  D A++       +S   R L T    +    AP  LK+   PL+ +
Sbjct: 128 VSALEPLTEAREPFDVALQT---TGRASGAARLLFTASDEIFPVCAPSLLKDLPLPLTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDF-NWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L    L++   ++P+   D+ +W   +  P    P+I  +  +SY  ++Q  V G G+A
Sbjct: 185 QLSSLPLLSH-RVVPQDWFDWPDWYEAIGMPRRANPKI--IYFDSYPLVLQAAVAGQGVA 241

Query: 243 L 243
           L
Sbjct: 242 L 242


>gi|84499914|ref|ZP_00998180.1| hypothetical protein OB2597_08239 [Oceanicola batsensis HTCC2597]
 gi|84391848|gb|EAQ04116.1| hypothetical protein OB2597_08239 [Oceanicola batsensis HTCC2597]
          Length = 311

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 127/294 (43%), Gaps = 25/294 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++ D D LR+F + A   + + A  +L L+ +  S +++ LE E+G++L  R  R ++L+
Sbjct: 9   IAVDTDSLRLFVMAADRLNISAAGRELGLAPAVASARLAKLEQELGVELLRRTTRKVSLS 68

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+       E+  + +  +  L  +   P G LR A      Q  +   L EF   YP
Sbjct: 69  LDGADFLPYAREILAQADAGRAALGGTGAGPKGTLRFAAPSSFAQLHIMPLLPEFHEEYP 128

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L L +   D      D A+R   P+  SSL  RKL        AAP YL     P
Sbjct: 129 DLTLDLRLSDTRFDAIEGSFDLALR-SGPLTDSSLKGRKLADDTRILCAAPAYLDRRGMP 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------------------ 222
            +  +L  H+LI +G+L P+ + +      +  P     ++C                  
Sbjct: 188 QTPTDLSGHDLIAWGNLEPRELVNAQRETALLDPAS---MTCRTILDDGDAQREATLAGA 244

Query: 223 -LQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRI--MEDVITPSFTVYFCY 273
            L +NS  ++      G  + +LP++ + D   L  I    +V+TP   V+  +
Sbjct: 245 GLSMNSLWNVAGEIARGRLVRILPEWKMNDRSVLWLIYPRTNVLTPKTRVFMDF 298


>gi|290509114|ref|ZP_06548485.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289778508|gb|EFD86505.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 289

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 121/286 (42%), Gaps = 19/286 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  +RVF  V R GSF  AA  L +S  ++ R+I  LE E    LF R   GL LT+ 
Sbjct: 1   MEWGDVRVFLAVMRKGSFGEAARSLGVSHPTVGRRIKALEAEAQQALFRRTKEGLVLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++ ++   V +     +  L  +  +  G LRI+        +L   L E    +P I
Sbjct: 61  GDRVLKLAEAVENSALAMERRLAGNHERLEGILRISCAEWFANYVLAPVLSELTRRHPAI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++I   + +++S   AD A R+  P     ++QR+L+TI    Y  P           
Sbjct: 121 VPEIIASYRLLNLSRRDADIAFRI-VPFTEPDIVQRRLMTIPYALYGTP----------D 169

Query: 183 IQELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +  + +H+    G ++    +    D  WL  +DR     R+      S     Q C  G
Sbjct: 170 MAGIAQHDPAAVGLILMNTAQSHFSDVAWL--LDRFPQSRRV--FTSTSRAVQAQMCQRG 225

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            GIA+LP  +      L  I      PS  ++  Y   L++  +L+
Sbjct: 226 MGIAVLPRPLGDAITGLQPISMPEPPPSKNIWVGYHSDLRHMDRLR 271


>gi|194364712|ref|YP_002027322.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347516|gb|ACF50639.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 299

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 5/199 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR GSFT AA QL +SQS++S  + GLE  +G++L  R  R ++ TE G++
Sbjct: 7   NDLQAFVHVAREGSFTRAAAQLGVSQSALSHAMRGLEERLGVRLLTRTTRSVSTTEAGAR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    ++E     L E   +P+G +RI  T    + +    L   L  YPD++++
Sbjct: 67  LLDTLAPRLAEIEDELAALAEYRERPAGTIRINATGHAAEYIAWPRLAPLLQQYPDLKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D    DI  +  D  IRL + +    +       + M    AP Y      P    +
Sbjct: 127 LTTDYGLADIVAERYDIGIRLGERLARDMIAVPVSPPLRMRVVGAPSYFHQYVVPRHPHD 186

Query: 186 LDKHNLITF-----GDLIP 199
           L  HN +T      G L+P
Sbjct: 187 LANHNCVTLRLPTHGGLMP 205


>gi|83859791|ref|ZP_00953311.1| transcriptional regulator lysR family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852150|gb|EAP90004.1| transcriptional regulator lysR family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 310

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 116/261 (44%), Gaps = 11/261 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W    +   V  +GS   A   + LSQ ++SR++  LET +G  LF R    LT T  G
Sbjct: 3   NWSDYHLALAVFEAGSHAAAGRVMGLSQPTVSRRMRALETHLGGALFERRGDILTPTGLG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +      +  +    +   +    +  G++ +A +  +G + L G L   L  +PD+ 
Sbjct: 63  RSVIDHARNMQDEAAAIERAARSGHERIEGRVTVAASDGIGADWLPGALTPLLEAHPDLS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +  +  +++   AD A+R  +P    SL+ R+   +    YA+  YLK    P ++
Sbjct: 123 VELKIGFEPANLAGGEADIAVRWGQPGPQHSLLARRAAEVGSGMYASECYLKKHGAPQTL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSG 240
           +++  H  + +   I      F W  T   PIG+   PR   +      + ++    G G
Sbjct: 183 EDVADHVAVGWATPIA-----FQWPRT---PIGDELRPRRDVMVAAHPSAHLEGLRNGLG 234

Query: 241 IALLPDYIVKDNPNLVRIMED 261
           + +    + +  P LVRI+ D
Sbjct: 235 LGVTSHRLARARPGLVRILPD 255


>gi|226328187|ref|ZP_03803705.1| hypothetical protein PROPEN_02079 [Proteus penneri ATCC 35198]
 gi|225203891|gb|EEG86245.1| hypothetical protein PROPEN_02079 [Proteus penneri ATCC 35198]
          Length = 254

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++ RVF  V    SFT AA++L+L+ S++SR +  LE ++G+ L  R  R + LT +G  
Sbjct: 27  EEARVFVEVVEHKSFTKAADKLNLANSAVSRTVKKLEDKLGVNLLNRTTRQIALTSEGEL 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    +  +++  + EL  +   P G LRI     +  +LL   +  F   YPDI + 
Sbjct: 87  YFQRMKVILQEMQAAENELHGTQRSPKGLLRIDAATPVVLHLLIPFISVFRQQYPDIILS 146

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+     +++     D AIR+   +  SSL  R L   H    A+P Y++    P + Q 
Sbjct: 147 LVSSETFVNLIERKVDVAIRVGH-LTDSSLRARPLFNSHRKIIASPKYIERKGFPTTAQM 205

Query: 186 LDKHNLITFGD 196
           L +H  +TF +
Sbjct: 206 LSEHTCLTFTE 216


>gi|87119970|ref|ZP_01075866.1| transcription regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86164672|gb|EAQ65941.1| transcription regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 311

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 125/266 (46%), Gaps = 13/266 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+  RVF +VA  GS + A   + +SQ ++ RQIS  E+E+ + LF R  + L LT+ 
Sbjct: 19  FDWNHARVFMLVADEGSLSGAGRLMGMSQPTLGRQISRFESELNLTLFERVGKRLVLTQS 78

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+KL+    ++        +  +  S    G + ++ +      +    L +   + P I
Sbjct: 79  GAKLYEHVKQMSDAANQFALVAKGQSSDIEGDVGLSLSQLDAFFIFPDLLPKLHEIAPKI 138

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L + N   D+    +D AIR ++P + + LI +KL    ++ Y    Y+ +  E  +
Sbjct: 139 RLELDVSNHISDLKRRQSDLAIRYKRP-EEADLIIKKLGVEKVYLYGHKEYVASLNE--T 195

Query: 183 IQELDKH-NLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           I E D    +I F   D + K +E      + D      +IS L  ++ L   Q    G 
Sbjct: 196 IPEFDSTLRIIGFEQTDQLQKLLESLGLKVSSD------QISFL-CDNQLVQWQLIRQGY 248

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITP 265
            + LLPD+I   +PNLV      + P
Sbjct: 249 ALGLLPDHIAAKDPNLVPAFVSSLVP 274


>gi|148547428|ref|YP_001267530.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511486|gb|ABQ78346.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 301

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 123/247 (49%), Gaps = 7/247 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F     +  F+ AA +L L+ SS++R +  LE  +G  L  R  R ++LTE G++ +
Sbjct: 7   MKMFVATVDAQGFSAAARRLGLATSSVTRLVDALEASLGATLLNRSTRQVSLTEAGARYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    ++  L+     + +   +P G LR+   ++ G+ ++  +L  FL  +P +++ + 
Sbjct: 67  QRARGIFEALDEADASIADRGEEPVGVLRLCLPVEFGRRVIAPHLGPFLAQHPALELDID 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186
           L ++  D+     D +IRL  P  +  L+ R+L        A+P YL   REPL   +EL
Sbjct: 127 LSDRLDDLLDGRYDLSIRLGDPSPNDELVCRQLGRFQRWLVASPAYLAG-REPLQHPREL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
             H  + F        +   W  T  +   E  +S    ++   +++   L GSGIALL 
Sbjct: 186 LDHACLRF----RYGQKARPWRLTCGQDSLELDVSGPLRSANADMLRETALAGSGIALLA 241

Query: 246 DYIVKDN 252
           D++V+++
Sbjct: 242 DWLVRED 248


>gi|330873150|gb|EGH07299.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963233|gb|EGH63493.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 315

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSSVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILASVEEAEAEASDAHARPAGQLKVHSMPGVGQHYVIDAIARYRRNHPDVAFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K         +L
Sbjct: 126 TMTHRVPDLLEEGFDVSIVLASELADSGFVSQRLGITYSIVCASPDYVKTFGMAHKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+        WL   D P G+  +    S L VNS  ++      G GI 
Sbjct: 186 LNHACLR---LVSPVFPLDKWL--FDGPEGQEMVTINSSPLLVNSADAMKTAISSGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y   +   N  LVR++ D  +    +Y  YP            R ++  K R W
Sbjct: 241 ILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPS-----------RQYLDAKIRTW 287


>gi|241203616|ref|YP_002974712.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857506|gb|ACS55173.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 296

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 116/257 (45%), Gaps = 15/257 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +A+SG+   AA+QL +  ++ISR++S LE  +G KL  R  R + LT  
Sbjct: 17  LDWDDLRHFLALAQSGTLLGAAKQLGVEHATISRRVSSLEASLGRKLVDRRGRRIILTSD 76

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++ R  + V  +    +   + S+ +  G +RI+    L   LL   +      +P +
Sbjct: 77  GEQVARHAALVAAQTAAIEQLGRSSATELRGHVRISAPPALSSVLLAKPIAAVRRDHPGV 136

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+ + +   ++   AD A+R+ +P      I  KL     H YA+  YL+       
Sbjct: 137 EITLVGEKRLASLNRREADIAVRMSRPEDGDYAIV-KLGETSFHLYASKSYLETVSP--- 192

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                    I + + +    +    +     RPI   R S L+  +         LG+G+
Sbjct: 193 ----SDWTFIGYDETMNASPQQLRLIELAAGRPIA-VRSSVLEFQA-----ATARLGAGV 242

Query: 242 ALLPDYIVKDNPNLVRI 258
            +LPD+ V D   L RI
Sbjct: 243 VMLPDFAVLDTSGLQRI 259


>gi|254523288|ref|ZP_05135343.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219720879|gb|EED39404.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 307

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 20/260 (7%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           FD+   + VF  V   GSFT  A  L  + S +SR ++ LE  +G +L  R  R + LT+
Sbjct: 5   FDYLGDVEVFLAVVEHGSFTAGAVALSTTPSVLSRAVTRLEARLGRQLLQRTTRRVGLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G          +  L+  + ++       +G++R++     G   L   L  F   YP 
Sbjct: 65  AGRLYLEQVRTAFGLLDDAERDVLAQDGALAGRVRLSVPTTYGHYRLPPVLARFAQQYPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L + N+++D+  +  D AIRL + +  S L+ RKL    +   A+P YL+    P 
Sbjct: 125 VQVELNITNRNVDLVAEGFDLAIRLGQ-LPDSGLVGRKLEDAPLMLVASPEYLQRRGAPQ 183

Query: 182 SIQELDKHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           ++ +L +H  + F     G L P        D +WL         PR S    +  L ++
Sbjct: 184 TLDDLQQHLCLPFVMPRTGRLAPWIFRDDGRDVDWL---------PRSSIETSDDVLGVV 234

Query: 233 QYCVLGSGIALLPDYIVKDN 252
                G GI     +IV++ 
Sbjct: 235 SLAEQGIGICQSYAFIVRER 254


>gi|189352270|ref|YP_001947897.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189336292|dbj|BAG45361.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 331

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +    SFT AA  L +S+++ +R +  LE  +G+ L  R  R L  T +G   +
Sbjct: 8   MRIFARIVEMNSFTRAALSLGISRATATRTVQELEAALGMPLLVRTTRALRTTPEGDAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   ++  +  ++ ++  PSG  R+     +   ++   L  F   +PD+ + L 
Sbjct: 68  RRCLRITADVDELEASIRRAARHPSGPQRVDLPGPVASAIVLPALGTFHARHPDLVLMLG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  +  D+  D  DC++RL + +  SS + R L  +     A+P YL  C  P ++ +LD
Sbjct: 128 VSVRAADMVGDAVDCSVRLGE-LPDSSFVARPLGALERVTCASPAYLDRCGVPRTLDDLD 186

Query: 188 KHNLI 192
            H  +
Sbjct: 187 SHRAV 191


>gi|117619067|ref|YP_858201.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560474|gb|ABK37422.1| LysR-family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 302

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 127/299 (42%), Gaps = 18/299 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D+   R+F  V   GSF  A++ L +  S+ISR I+ LE  + ++L  R  R + LT+
Sbjct: 4   GLDFTSSRIFIAVVEQGSFVGASKTLEIPTSNISRSIAQLEERLSLQLIERSTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LR+    + G  LL   + +F   +P+
Sbjct: 64  AGQLLYTRVKPLLESLEQTEAELTSQQIQLKGPLRLCIPNEAGPRLLGTAIADFACQHPE 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+I  I +    +   +  D A+ + R  +  S  I   L TI      +P  ++ C  P
Sbjct: 124 IKISCITNLSGFETLREDLDIAVIIHRGKLDDSDYIASHLTTIPCTVVGSPALIQQCGLP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQY 234
               +L     IT        ++   W  T+  P  E   S +QVN +  +      ++ 
Sbjct: 184 SHTTQLQDLPCIT----TVSALKGMPWQFTL--PSAE--FSTVQVNEHYRVNSGELALKA 235

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G G A+L     +   D+ NLV I  ++      ++  Y        K + F +FI
Sbjct: 236 AIAGVGFAILAKVSCQEFIDDGNLVEIEFELPAAPLQLFAVYANRQYLPAKTRVFIDFI 294


>gi|116696232|ref|YP_841808.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530731|emb|CAJ97078.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 342

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 129/299 (43%), Gaps = 40/299 (13%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  +  +GS + AA QL  +Q ++SR++  LE  +G++L  R    + LTE G + +
Sbjct: 33  LQTFVRIVEAGSLSMAAAQLQTTQPTVSRRLQTLERLLGVRLLQRSTHAMKLTEDGERCY 92

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+       + +++     P+G LR+      GQ LL G L  +L   P++ ++ +
Sbjct: 93  ERAKELVADWTMFEADVRGVGHAPAGTLRVVVPHAFGQELLVGPLAGYLQQCPEVSVEWL 152

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D   +  DCAI + + +    ++  +L  +     AAP   +   +PL  +   
Sbjct: 153 LHDRTPDFIAEAIDCAIHVGE-VHEPGVVAVRLADVPRAVIAAPSLFEG--KPLPRR--- 206

Query: 188 KHNLITFGDLIPKCMEDFNWLA---------------TVDRP--IGEPRISCLQVNSYLS 230
                      P+ +ED  WLA               T+ R     +PR+S    +S  +
Sbjct: 207 -----------PEDLEDLPWLALRTFYRNEVVLQNTQTLARQGIAFQPRMST---DSLYA 252

Query: 231 IMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +     LG G+A+   +I  D+     L+ ++         +Y  YP A     KL+ F
Sbjct: 253 LHSATRLGLGVAVGSAWIFADDIASGRLLHLLPQWQADPLPIYLVYPYARFYPAKLRLF 311


>gi|91775502|ref|YP_545258.1| LysR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91709489|gb|ABE49417.1| transcriptional regulator, LysR family [Methylobacillus flagellatus
           KT]
          Length = 305

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 115/244 (47%), Gaps = 3/244 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L  F  VA + SF+ AA+++    + +SR++S LE+ +G++L  R  R + LTE G+ 
Sbjct: 11  DELVAFVAVAETSSFSVAAKRMGRDPTILSRRVSQLESSLGVRLLTRTTRRVVLTEVGNF 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  +L+   +E    +  P G LRI+     G+  +   +  F+  +P I++ 
Sbjct: 71  YYPRIRTIIDELDAASLEASNFASSPQGLLRISLPFTFGKQWIAPLIPGFIAQHPRIKVD 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D A+RL   + SSSL  +K+        AAP ++     P   ++
Sbjct: 131 VRFTDRLVDLVAEGYDIAVRLGTSLNSSSLTAKKIAPFRYVLLAAPKFIAEHGLPAGPED 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  +  + F  L      ++       R    P    +  NS  +++   + G+GI L  
Sbjct: 191 LAHYPCLGFTSL--STWPEWRLKNGAQRKTIRPEGPLVTDNSE-ALLLAAIQGAGIILTA 247

Query: 246 DYIV 249
           D++ 
Sbjct: 248 DWLA 251


>gi|221212255|ref|ZP_03585233.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168340|gb|EEE00809.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 319

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 9   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP + ++L 
Sbjct: 69  DRCQRILAYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPSVAVELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P ++ +L
Sbjct: 129 LSQHVPDIIDEGYDVSLQLSTAELPDSGLVSQRLGEMHSVLCASPAYLKERGTPRTVSDL 188

Query: 187 DKHN-LITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H  L     + P+    ++  N   T + P+ +      QVN   ++      G GI 
Sbjct: 189 EGHACLQIVTPIFPRDRWHLDGPNGRETFELPLPD-----FQVNIADALGAGLRAGLGIG 243

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ +      TVY  Y        K++ F +F+
Sbjct: 244 ALPMSTALPAFASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFL 294


>gi|200388744|ref|ZP_03215356.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199605842|gb|EDZ04387.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 305

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L+             +W A   R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTLL-------HDASRRDWQAYT-RQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIAL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GIALANNVMSQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|325529533|gb|EGD06430.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 326

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 126/287 (43%), Gaps = 12/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE  +  +L +R  R L+LTE G++  
Sbjct: 7   MRVFVCVAEQQSFRRAAHHLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTEAGARYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  ++ +P G LRI  +  L    L   +  F   YP++++ L 
Sbjct: 67  DGCRALLEEFDHLEASVAHAAREPGGTLRIVASGLLSPLALTPLVSSFRQRYPELRVHLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  I     +  + +LI   L      A AAP YL+   EP S  +L
Sbjct: 127 VAEGPLDMLDSGYDVGIVTGDRLAGNPALIGHPLAPNPFVACAAPAYLERRGEPRSPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H+ I    L P        L   D  +     R +C  VN    +    V GSGIA+L
Sbjct: 187 PRHDWIA---LAPHQHTPAWRLVGPDEVVHAVTVRPAC-TVNQLALVQAAVVAGSGIAML 242

Query: 245 PDYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           P + V    DN  LVR++    +  P   +   YP       + ++F
Sbjct: 243 PSHCVADAIDNGTLVRLLPTYRIDDPDAQLSLVYPNRQFVPARTRSF 289


>gi|197295543|ref|YP_002154084.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195945022|emb|CAR57645.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 338

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 140/298 (46%), Gaps = 12/298 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VAR GSFT AA+ L +S +S S  +  LE  +G+ L  R  R + LT +G +  
Sbjct: 8   MSVFSHVARLGSFTAAADMLGISAASASTLVRRLEEYLGVTLLQRSTRCVRLTTEGEQYQ 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  Q +L  +     G+L +    ++  ++L   L  F   +P++ +++ 
Sbjct: 68  EHCQRILGEIELMQQQLSGAGKIARGRLAVDLDQEVAHSVLP-FLPVFRANHPEVGLRVD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +      +  +  DCA+ + + +  SSL  R++   H    A+P YLK    P+    L 
Sbjct: 127 VGGDADGLIANGVDCAVVVGQ-LADSSLRSRRVGQFHAVTVASPDYLKARGTPVDPDGLH 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H++I +       + +F +  TVD    E R+     + VN   S ++Y V G GIA +
Sbjct: 186 CHDVIHYTPRRFGPVREFRY--TVDG--AETRLKLAERISVNDVRSAVRYAVEGVGIAQV 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            + +V +      LV I+ +   P   +   YP+  +    ++AF +++  + RD + 
Sbjct: 242 SERMVAEELATGTLVSILGEYGPPPLPISVLYPDRRQVPMSIRAFIDWMQTQLRDLEI 299


>gi|94309144|ref|YP_582354.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93352996|gb|ABF07085.1| putative DNA-binding transcriptional regulator [Cupriavidus
           metallidurans CH34]
          Length = 308

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 97/187 (51%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++ + GS   AA+QL ++ S+ S++++ LE  +G++L  R  R L++T +G    
Sbjct: 7   LAFFVLLVKRGSLAGAAQQLGVTPSATSKRLAALEARLGVRLLNRTTRRLSVTPEGEAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+  +  L+ S V P G LR+  T+  G+  L   + +FL+  PDI++QL 
Sbjct: 67  AQGGRILAELDELEQGLRGSRVAPRGLLRVNGTLGFGRRHLAPAIGDFLVACPDIEVQLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ++++ +  D  I L   +  + L  R+L        A+P YL    EP S + L 
Sbjct: 127 LTDRALNLAEEGYDVGI-LVGDLPDARLNARRLALNSRLLCASPAYLARHGEPASPRALT 185

Query: 188 KHNLITF 194
           +H  I  
Sbjct: 186 QHRCIVI 192


>gi|260774088|ref|ZP_05883003.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260611049|gb|EEX36253.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 298

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 135/295 (45%), Gaps = 17/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSFT AAE L+LS+  +SR +  +E  +  +L +R  R ++LT  G +  
Sbjct: 7   MRSFVEVANIGSFTQAAENLNLSRLQVSRHVQEIEDWLKQRLLHRTTRKVSLTASGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++ ++    +I   E S   SG++RI+  I L + LL   ++ F  L+P + I ++
Sbjct: 67  RQCEKILNQTAELEIRALEQSQSLSGRIRISVPIGLARYLLLDAVEAFTDLHPQVTIDIL 126

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++   +  +  D A+R   +P     LI R+L  +   A AAP YL   +  +   +L
Sbjct: 127 ASDRLAQLVDERVDIALRFTTQP--DEQLIARRLFQVDTVACAAPTYLAQHQPIVQPSDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP- 245
            KHN   F  L     E      T    +       ++ N    I +  + G GIALLP 
Sbjct: 185 AKHN--CFVHLSHHKWEFLRHNQTYSVNVN----GTIRANDMSLICRATLHGKGIALLPC 238

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              +  +KD   L++I+ D    +  ++  Y   L  + +    R FI   +  W
Sbjct: 239 DLANRYLKDRA-LIQILPDYHLATNALWAVY---LSRSYQSPLVRQFIDFVSTQW 289


>gi|104780583|ref|YP_607081.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95109570|emb|CAK14271.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 310

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 132/306 (43%), Gaps = 33/306 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V  +GS    A  L +S +++S+ ++ LET +  +L  R  R + LT  GS 
Sbjct: 5   NAIRSFIKVVEAGSIAGGARALGISPAAVSQTLARLETHLQARLLSRTTRSMALTAAGSL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+   L   +  L     +P G+L IA+T   G+++L   +  F   YP + I+
Sbjct: 65  YYERVREIDRDLARAEQALSTPDSEPQGRLCIASTSAFGRHILAPMIPAFAARYPQLSIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+  ++ ++ + +  D ++R+  P    +L+ R +  I     A+P YL +   P S + 
Sbjct: 125 LVTTDRKVNHAREDVDVSLRI-TPQLEDNLLARHIARIPFICCASPGYLASAGWPDSPEA 183

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYC 235
           L  H  + F     G  +P       W    D      P G   IS    +   ++ Q  
Sbjct: 184 LRDHRCLVFRYPVDGRFLP-------WGFVRDGLRFEAPFGPVLIS----DDIDALTQMA 232

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIME--------DVITPSFTVYFCYPEALKNTGKLK 284
           +   GI  L ++IV+   D   LV + E           T    VY C  +    T K++
Sbjct: 233 LNDGGITRLAEFIVRPHLDAGRLVPLFEFSALSQQAYAQTEPMDVYLCLADRHAMTIKVR 292

Query: 285 AFRNFI 290
           AF  ++
Sbjct: 293 AFMAYL 298


>gi|283835422|ref|ZP_06355163.1| glycine cleavage system transcriptional activator [Citrobacter
           youngae ATCC 29220]
 gi|291068595|gb|EFE06704.1| glycine cleavage system transcriptional activator [Citrobacter
           youngae ATCC 29220]
          Length = 305

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTDATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGDKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
             +L KH L+             +W A   R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PDDLAKHTLL-------HDASRRDWQAYT-RQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIAL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GIALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|239820179|ref|YP_002947364.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805032|gb|ACS22098.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 302

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 16/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F    + GS + AA  L LS ++ISR+IS LE E+G++L  R +R L +TE G  
Sbjct: 5   DSLRIFVATQKKGSLSAAARSLSLSPATISRRISALEEELGVQLVDRTSRNLKVTEAGQA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V   +   +  +  +  +P G+LR+ +   +G  +L   L  F  LYPDI+++
Sbjct: 65  FLERAEAVLELMSEAEQVVHNARQRPEGRLRVHSRTHIGLRVLAPLLPRFAELYPDIRVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L    +++     D  IR  +   S  +I+R L +  +   A+P ++K         +
Sbjct: 125 LELSEHPVNLVEHDFDVDIRTGESTDSGFVIKRLLSSDEV-LVASPAFVKTYSRIRHPND 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L +   +T+     +  E   W   +D    +  +     L  N+   +    + G G+A
Sbjct: 184 LPQVRCLTY----RREREVITW-KYIDEAGEQQELVIQGVLSANNGELLRLAAIGGMGVA 238

Query: 243 LLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LL +  V+ +     LVR++ D    V   S  V+  + ++     K++AF +++
Sbjct: 239 LLSEATVRSDLQAGTLVRLLPDYRFAVRAFSNGVFAVFRQSRVLPLKVRAFVDYV 293


>gi|188533870|ref|YP_001907667.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188028912|emb|CAO96778.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 299

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 125/281 (44%), Gaps = 6/281 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L    +VAR  SFT AA +L +SQS++S  I  LE  + ++L  R  R ++ TE G
Sbjct: 5   NFNDLISLMMVARERSFTRAAARLGVSQSALSHSIRALEERLALRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    ++E+  + + E   K +G +R+       +  L   L  FL  YPD+ 
Sbjct: 65  ERLINAIAPRLEEIESQLVAMSEMREKTAGNIRLNAGHHAVKTTLWPALHPFLKQYPDVN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  +RL + +    +  R      M    +P Y  +   P S 
Sbjct: 125 VEITVDNTLTDIVSGRYDAGVRLGEQVAKDMVAVRIGPDWSMAVVGSPDYFSSHGRPQSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   + + W      R I       L  NS    ++  + G G+A
Sbjct: 185 QDLQHHSCINL--RLPTMGDLYAWEFKKEGREIRVRVEGQLIFNSLEPRIEAAIGGLGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
            +P+  V    +N  L R++ D   P    Y  YP   ++T
Sbjct: 243 FVPEDAVNAHLENGRLERVLTDWSEPFTGYYLYYPSRKQHT 283


>gi|299533164|ref|ZP_07046548.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718694|gb|EFI59667.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 314

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 132/282 (46%), Gaps = 15/282 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V    SF  AA QL L+ S++SR +  LE   G++L +R  R L+LTE G+++
Sbjct: 10  EMLVFAKVVEQRSFAAAARQLDLTTSAVSRSVGRLEAHWGVQLLHRTTRSLSLTELGAEV 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   S++              S  P G +R+      G+  L   L      +P++++ +
Sbjct: 70  YAACSQLAQTASDIHAIAGHYSGVPRGTVRLTAPTIFGEIWLSAQLPALRRQWPELEVAV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN-CREPLSIQ 184
            L ++  D++    D AIRL +P Q    ++ R+L  +   A A+P YL+   + P   Q
Sbjct: 130 SLSDQMQDLAQQGLDLAIRLTRPEQLPPHMVARELRQVRYIAVASPAYLRGLIKPPEHPQ 189

Query: 185 ELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           EL + + +      +GD   +         + +  + E  + S L ++S   I+   +  
Sbjct: 190 ELGREHGVACITLGYGDFQSRLQWVHGQTRSPEAAVTEVAVHSPLSMDSSTGIINLALQH 249

Query: 239 SGIALLPDYIVK---DNPNLVRIMED-VITPSF---TVYFCY 273
            GI L+ D+  +    +  LV+++ D ++T ++   T Y  Y
Sbjct: 250 QGIGLVADFAAQAVLSSGALVQVLPDWLLTGNYAPRTAYALY 291


>gi|239818162|ref|YP_002947072.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804739|gb|ACS21806.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 309

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 123/297 (41%), Gaps = 23/297 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V R G  + AAE LHL+Q ++S+Q+  LE  +G+ LF R  + L LT  G +  
Sbjct: 13  LRAFSTVVRFGGVSRAAEALHLTQGAVSKQVQELERWIGVPLFERSRKRLALTPAGERYE 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +LE   +E   S     G L ++T    G   L   L +F  L+P I +  +
Sbjct: 73  KAVRALLAQLEAATLEFITSG-DGGGALHLSTLPTFGAKWLIPRLPDFQRLHPQITLHFV 131

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                 D      DCAI          +S  L  R +  I   A  A   +   R P  +
Sbjct: 132 PFVHGYDFERPELDCAILFGDGHWPGARSHYLAGRDVALIAPRAGLAEAAI---RTPQDV 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                   +T    +P+    ++    V    P+  P     Q + + ++++  ++G G+
Sbjct: 189 ARCTLLRHVT----VPQSWLQWSEAHGVRGLDPLAGP-----QFDQFQTMIRAVMVGMGV 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+P  +V+D      + E +    +      +FCYPE       L  FR ++   A
Sbjct: 240 ALVPRCLVQDEIASGLVDEPLPGGGYRGDQGYWFCYPEGRGQLATLDHFRRWLLADA 296


>gi|183600880|ref|ZP_02962373.1| hypothetical protein PROSTU_04480 [Providencia stuartii ATCC 25827]
 gi|188019663|gb|EDU57703.1| hypothetical protein PROSTU_04480 [Providencia stuartii ATCC 25827]
          Length = 313

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 130/296 (43%), Gaps = 18/296 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S Q+  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQMKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++ +       L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSSINEATRKLQARSAK--GALTVSLSPSFAIQWLVPRLSSFNQAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    S L   +L   ++    +P  L    +    ++
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWSGLRTDRLYAEYLMPVCSPLLLTGAHQLKQPED 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  H L+             +W A + R +    I  +Q     S    ++Q  V G G+
Sbjct: 186 LVNHTLL-------HDSSRRDWQAYI-RQLELHNIINVQQGPIFSHSAMVIQAAVHGQGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + K   D   LV    +V+      Y    E   + GK+ AFR +I  +A
Sbjct: 238 ALTNNVMAKNEIDAGRLVCPFNEVLVSKNAFYLVCQENQADLGKIAAFRQWILTQA 293


>gi|119775618|ref|YP_928358.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119768118|gb|ABM00689.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 313

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSAAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGHL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    +     +   +    G L++  +   G   +   L EF+  +P++++Q
Sbjct: 66  LYVQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMARHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLVASPEYIARHGEPSRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    V G G+  L
Sbjct: 185 LVDHNCLVYHG---EWHEHSVWQFKRGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVYL 241

Query: 245 PDYIVKDNPN---LVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D  N   LV ++ D  +T    +   YP       K+ +F +FI
Sbjct: 242 ASYLMEDEINKGTLVPLLRDWQLTHHLPLQAVYPRRKHLAPKVSSFIDFI 291


>gi|115372290|ref|ZP_01459600.1| regulatory protein, LysR:LysR, substrate-binding [Stigmatella
           aurantiaca DW4/3-1]
 gi|310817295|ref|YP_003949653.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370755|gb|EAU69680.1| regulatory protein, LysR:LysR, substrate-binding [Stigmatella
           aurantiaca DW4/3-1]
 gi|309390367|gb|ADO67826.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
          Length = 302

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 136/302 (45%), Gaps = 19/302 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D L+ F  VAR+  F   A     S S++S  +  LE ++G++LF+R  R + LT
Sbjct: 1   MKADLDDLKAFVAVARARGFREGARVNGGSASALSEAVRRLEAQLGVRLFHRTTRSVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      V  +LE     +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGQGLLERLGPVLAELEAALDVVNGFRDRPAGALRLNVPVSAARLVLPRIVPPFLASYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA-PHYLKNCRE 179
           DI++++I ++  +D+     D  IR  + ++   +       +   + AA P YL     
Sbjct: 121 DIRLEIITEDSFVDVLASGCDAGIRYDERLEQDMIAVPIGPRVQRFSTAASPAYLGRHGR 180

Query: 180 PLSIQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           P   +EL  H  +    + G + P   E    +  VD P+G P I      S L+I +  
Sbjct: 181 PKHPRELLGHTCLRSRFSSGAMPPWEYERNGEVVQVD-PVG-PLIVSAGGASDLAI-EAA 237

Query: 236 VLGSGIALLPDYIVKD--NPNL-VRIMEDVITP---SFTVYFC-YPEALKNTGKLKAFRN 288
           + GSGI     Y  +D   P+L    +E ++ P   +F+  F  YP        L+AF +
Sbjct: 238 ISGSGIV----YHFEDWLRPHLDSGALEPILKPWWQNFSGPFLYYPGRRLVPAPLRAFID 293

Query: 289 FI 290
           FI
Sbjct: 294 FI 295


>gi|307261393|ref|ZP_07543068.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869124|gb|EFN00926.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 294

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 93/191 (48%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  +FT AA +L +SQS++SR I  LE+ +G++LF R  R L+LT  G
Sbjct: 6   NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L +   + + KL+     L      PSG++RI  +      +L   L +F   +P+IQ
Sbjct: 66  NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRHPEIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D    DI  +  D  +R    +    +  R      M    +P Y      P + 
Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPKTP 185

Query: 184 QELDKHNLITF 194
            +L  H  + +
Sbjct: 186 SDLAHHQCLNY 196


>gi|293416055|ref|ZP_06658695.1| glycine cleavage system transcriptional activator GcvA [Escherichia
           coli B185]
 gi|291432244|gb|EFF05226.1| glycine cleavage system transcriptional activator GcvA [Escherichia
           coli B185]
          Length = 305

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    +     GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDNQAELGKIAAFRQWILAKA 292


>gi|269138075|ref|YP_003294775.1| DNA-binding transcriptional activator GcvA [Edwardsiella tarda
           EIB202]
 gi|267983735|gb|ACY83564.1| DNA-binding transcriptional activator GcvA [Edwardsiella tarda
           EIB202]
 gi|304558119|gb|ADM40783.1| Glycine cleavage system transcriptional activator GcvA
           [Edwardsiella tarda FL6-60]
          Length = 315

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 131/299 (43%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSALNDATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++     D  D AI   +       ++R L   ++    +P  L           
Sbjct: 127 IQAVDREEGKLADDVDVAIFYGRGHWPGLRVER-LYAEYLMPVCSPQLL----------- 174

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238
           L +H L    DL    +       +WLA   R +G   I+  Q    +    ++Q  V G
Sbjct: 175 LGEHPLKDPADLAYHTLLHDTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIAL+ + + +   +   LV    DV+      Y    +A  + GK+ AFR +I  +A
Sbjct: 234 QGIALVNNVMAQTEIEAGRLVCPFNDVLISKNAFYLVCQDAQADLGKIAAFRQWILARA 292


>gi|221205391|ref|ZP_03578407.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175182|gb|EEE07613.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
          Length = 319

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 9   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP + ++L 
Sbjct: 69  DRCQRILAYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPSVAVELT 128

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P ++ +L
Sbjct: 129 LSQHVPDIIDEGYDVSLQLSTAELPDSGLVSQRLGEMHSVLCASPAYLKERGTPRTVSDL 188

Query: 187 DKHN-LITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H  L     + P+    ++  N   T + P+ +      QVN   ++      G GI 
Sbjct: 189 EGHACLQIVTPIFPRDRWHLDGPNGRETFELPLPD-----FQVNIADALGAGLRAGLGIG 243

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ +      TVY  Y        K++ F +F+
Sbjct: 244 ALPMSTALPAFASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFL 294


>gi|190574442|ref|YP_001972287.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190012364|emb|CAQ45992.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 343

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 142/296 (47%), Gaps = 19/296 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG----SK 65
            F  VA  GSF  AA++L + +S++SR +  LE+++G++LF R  R  TLT +G      
Sbjct: 29  AFIAVASEGSFARAADRLGIGRSAVSRSVQKLESQLGVRLFLRTTRSTTLTREGELFLEG 88

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   + +   LE  + +L+E    P G LRI+ +   G+ ++   L  F   YP + ++
Sbjct: 89  CNPGVTCILQALEEMR-DLREG--PPRGHLRISASHGFGRRVIAPLLAAFRAEYPQVSVE 145

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD +  D++ D  D A R    ++ S +I ++LV + +    +P Y++    P+S+  
Sbjct: 146 LLLDEQAPDLAGDRIDVAFR-DGLLEDSQVIAKQLVPMQLVVCVSPAYVQAYGLPVSVDA 204

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRP---IGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H  I  G  +P       W   VD     +  P  + L  N    ++Q  + G GIA
Sbjct: 205 LSTHACI--GRRLPGGRMQ-PWEFRVDGAEVHLQPP--AALVFNDADLVLQAVIDGLGIA 259

Query: 243 LLPDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP Y V++     R++   D   P     Y CY    +   +++AF +F   + R
Sbjct: 260 QLPSYQVREALWAGRVVTCLDRHAPLDRGHYLCYLSRRQLPKRVRAFIDFSTQRVR 315


>gi|153832288|ref|ZP_01984955.1| transcriptional regulator [Vibrio harveyi HY01]
 gi|148871599|gb|EDL70454.1| transcriptional regulator [Vibrio harveyi HY01]
          Length = 297

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 136/287 (47%), Gaps = 14/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  +   GS + AAE L LS++ ++R +S LE  +  +L +R  R L+LT  G +
Sbjct: 5   EAMNVFVTIVERGSLSAAAEHLDLSRTKVTRYLSELEKWMDTRLLHRTTRSLSLTSAGKE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              +  E+    ++      ++ V   G+LRI  +  +  + L   +  F+  +PD+ I 
Sbjct: 65  TLEIARELLALEDSLSGIRNQNRVNLKGQLRITASYSIVSSFLIDAITSFVEQWPDVAID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  ++ +++     D AIR+   +  ++++ ++L        A+P Y++    PL+ Q+
Sbjct: 125 IVSTDETVNLVESRIDLAIRITNAL-PANVVAKQLGECRSVICASPKYIEQKGAPLNAQD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L  HN ++F            W+     P G+  +S    +  N+   ++   + G+GI+
Sbjct: 184 LGHHNCLSF-----SYFGRSEWI--FSGPNGDESVSIKGNISANTPEVLLAAALNGNGIS 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L P   VKD      L++++ +    +  V+  Y    + T  L+AF
Sbjct: 237 LQPFPTVKDLITEGKLIQLLPEWHPKTLGVHAIYGTRKQVTPLLRAF 283


>gi|221319845|ref|ZP_03601139.1| LysR family transcriptional regulator [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|255767615|ref|NP_390544.2| LysR family transcriptional regulator [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|251757475|sp|P94501|GLTR_BACSU RecName: Full=HTH-type transcriptional regulator gltR
 gi|1710375|gb|AAB47963.1| GltR [Bacillus subtilis subsp. subtilis str. SMY]
 gi|225185243|emb|CAB14608.2| transcriptional regulator (LysR family) [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 296

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 130/267 (48%), Gaps = 19/267 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF   AR GS + AA  L+ +QS+++ +I  LE ++  KLFYRH+RG+TLT  G  L 
Sbjct: 6   LQVFLTTAREGSISKAALTLNYAQSNVTNKIQQLENDLQTKLFYRHSRGITLTPPGQILV 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++ H +E  +  + ESS  PSG LRI +        L   L  +  LYP++ + L+
Sbjct: 66  SYSEKILHTIEEARAAMGESSA-PSGPLRIGSMETTAAVWLPQLLAHYNNLYPNVDLNLV 124

Query: 128 LD--NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLSIQ 184
                + I   + Y      +  PI+   L+Q K++   M    +A H + +     SIQ
Sbjct: 125 TGPTEQQIQAVLHYELNGAFISGPIEHPDLVQEKVLDEEMVLVTSASHPVIS-----SIQ 179

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY--LSIMQYCV-LGSGI 241
           ++    ++ F        +  ++ A ++  + E  +  +++  +  L  +  CV  G GI
Sbjct: 180 DVQTQTMLVF-------RKGCSYRAKLNHILQEEGLLPIKLMEFGILEAIIGCVSAGLGI 232

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFT 268
           +LLP  I+  +    RI    I+  ++
Sbjct: 233 SLLPRSIIASHEKEGRIRSHTISDKYS 259


>gi|99082543|ref|YP_614697.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038823|gb|ABF65435.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 303

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 2/188 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F  V   GS T     + L+ +  S++I  LE  +G++LF R  R LT TE G +
Sbjct: 5   ESLRLFCRVVELGSITSGGRDVRLTPAVASKRIKELEEHLGVRLFNRTTRSLTPTEAGKR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    +   +E  +  + + S +P G L+I   +  G+ ++   + +F+  +P+I +Q
Sbjct: 65  FYREALRILDVVEEAESVVAQFSGRPRGTLKITAPLAAGRRIIAPLVPDFVDRHPEIDVQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + ++ +DI  +  D A  +  P   SSL  RK+ ++     A+P YL+    P   Q+
Sbjct: 125 MRMSDRRVDILAEGLDLAFFVGTP-SDSSLKMRKIASVDRVLCASPRYLERHGIPHVPQD 183

Query: 186 L-DKHNLI 192
           L  KHN +
Sbjct: 184 LMGKHNCL 191


>gi|254523630|ref|ZP_05135685.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721221|gb|EED39746.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 298

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 136/303 (44%), Gaps = 23/303 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  +F  V  +GS T AA++L LS++ +S  +  LE E+G+ L  R  R L LTE G +
Sbjct: 5   DRFDIFRAVVEAGSLTAAADRLGLSRAVVSFNLKRLEQELGVTLLLRSTRHLALTEAGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   +     +      +    +  G LR+ TT +  Q  L   L+ F   +P +Q+ 
Sbjct: 65  FLQHCVQALDAAQAAIDAARRDQHQLQGVLRLTTTPEYAQLRLIPALEAFRARHPALQLH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN------CRE 179
           L       D+  +  D AIRL + +  S L   +L    + A AAP  L          +
Sbjct: 125 LSTSPAPADLIPERFDLAIRLGR-LPDSGLHASELEQHPLCAVAAPSLLARLSSADAADD 183

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           P+ +  L +       D +P    D +    AT       P  + ++V+   S+  + V 
Sbjct: 184 PVQLGMLPRLGYPRLAD-VPVITPDGSDALFAT------NPANAVVRVDGASSLRAFAVA 236

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+G+ +LP ++++D+     L  ++     P  +VY  YP + + + K++   +F+    
Sbjct: 237 GAGVTVLPHWLIEDDLAQDRLRPVLRHHRFPQQSVYAVYPHSTQPSPKVRQLIDFL---- 292

Query: 295 RDW 297
           RDW
Sbjct: 293 RDW 295


>gi|197123986|ref|YP_002135937.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173835|gb|ACG74808.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 317

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 125/261 (47%), Gaps = 17/261 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  G F+ A   L  + S++++ ++ LE  +G +L  R  R + LT +G   
Sbjct: 11  EMEAFAAVAELGGFSAAGRALGKTPSALNKLVARLEARLGARLLTRTTRAVRLTAEGEAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H+    +  ++E  + E +  +  P G++R+   +  G + L   +  FL   P + + L
Sbjct: 71  HQRALRILAEVEEAEGEARGGA--PRGRVRVNANLPFGVHCLLPVVPSFLEANPGVTLDL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +D+    AD AIR+  P+++S L+ RKL    +   A+P YL     P +  +L
Sbjct: 129 VLTDEVVDLVERRADVAIRV-GPLRASGLLARKLGESPVAVVASPDYLARRGTPHTPADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIA 242
             H  I F    P+ ++D+ +     R  GE    P    ++     +  +  + G+G+A
Sbjct: 188 GAHERIGF--TFPRTLQDWPF-----RQGGEEVRVPVRGAVRAGDGETARRLALAGAGLA 240

Query: 243 LLPDYIVK---DNPNLVRIME 260
            L  + V    +   LVR++E
Sbjct: 241 RLALFQVTADLEAGRLVRVLE 261


>gi|161521562|ref|YP_001584989.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345612|gb|ABX18697.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 358

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +    SFT AA  L +S+++ +R +  LE  +G+ L  R  R L  T +G   +
Sbjct: 35  MRIFARIVEMNSFTRAALSLGISRATATRTVQELEAALGMPLLVRTTRALRTTPEGDAYY 94

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   ++  +  ++ ++  PSG  R+     +   ++   L  F   +PD+ + L 
Sbjct: 95  RRCLRITADVDELEASIRRAARHPSGPQRVDLPGPVASAIVLPALGTFHARHPDLVLMLG 154

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  +  D+  D  DC++RL + +  SS + R L  +     A+P YL  C  P ++ +LD
Sbjct: 155 VSVRAADMVGDAVDCSVRLGE-LPDSSFVARPLGALERVTCASPAYLDRCGVPRTLDDLD 213

Query: 188 KHNLI 192
            H  +
Sbjct: 214 SHRAV 218


>gi|146311937|ref|YP_001177011.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145318813|gb|ABP60960.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 301

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 136/295 (46%), Gaps = 19/295 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V  R  +FT +A +L ++QS++S Q+  LE   G++LF R  + LTLT  G+ L 
Sbjct: 10  LRAFEVATRHPTFTSSATELFITQSAVSHQLKNLEELWGLQLFQR-GKTLTLTPAGAALA 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  E + KLET+  +L+E   K   +LR++TT       L   L E   L+P+I + L 
Sbjct: 69  PIVREFFSKLETSLADLREQ--KSRVRLRVSTTYSFALKWLLPRLPELTRLHPEILVTLE 126

Query: 128 LDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             ++ I  +   ++ AIR      P   S  + R+     +   A+P  L+    P    
Sbjct: 127 STDRAIHFTNSDSNVAIRFGHGNYPALHSEFMFRE----QLFPVASPALLQRFGTPHDPA 182

Query: 185 ELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL ++ L+T    DL+PK    F  LA +        +     N     ++  +LG GIA
Sbjct: 183 ELLRYPLLTRDGADLVPKWDSWFE-LAGIQTDALHESVRFADTN---MTIEAALLGQGIA 238

Query: 243 LL-PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L    ++ K+    +LVR+           YF  P  ++    +  F +++  ++
Sbjct: 239 LARSGHVEKEIKEGSLVRLFNVRFPSPAAYYFVCPRGIETQPHIMKFCSWLMAES 293


>gi|325002746|ref|ZP_08123858.1| LysR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 305

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 97/189 (51%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F  +A +G+ T AA    +S S++S++++ LE  +G +L  R  R LTLT++G +
Sbjct: 7   DDLRFFTGIAAAGTLTEAARVWGVSVSAVSKRLARLERRLGARLVNRSTRRLTLTDEGRR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++  + ++   S +  G++ +  T+  G++ L   L  F   +PD++I 
Sbjct: 67  YAEGAVDVLGRIDDLEDDIGRRSARLHGRIAVHATMGFGRSHLAPLLGSFGAAHPDLRID 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  + +     D A+R   P+  S +  R L+       AAP Y+    EP ++ E
Sbjct: 127 LELSHLPVHVGGTGYDFAVRA-GPLPDSRMHARPLLRNRRVVCAAPSYVARRGEPRTLGE 185

Query: 186 LDKHNLITF 194
           L +H+ I  
Sbjct: 186 LAEHDCIVI 194


>gi|307129807|ref|YP_003881823.1| DNA-binding transcriptional dual regulator [Dickeya dadantii 3937]
 gi|306527336|gb|ADM97266.1| DNA-binding transcriptional dual regulator [Dickeya dadantii 3937]
          Length = 308

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 132/299 (44%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++  L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSALNEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSDYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ +   D  D AI   +      L   KL   ++    +P  L           
Sbjct: 127 IQAVDREEERLSDDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPQLLAG--------- 176

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238
             +H L T GDL+   +       +W+A   R +G  +I+  Q    +    ++Q  + G
Sbjct: 177 --EHPLKTPGDLVWHTLLHDASRRDWMAYT-RQLGITQINVQQGPIFSHSAMVLQAAIHG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 234 QGVALANNVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|264678167|ref|YP_003278074.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262208680|gb|ACY32778.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 312

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-KL 66
           L  F  VA+  S T+AA  + ++ +++S+ I  LET + ++LF R  R L LTE G   L
Sbjct: 9   LAAFEQVAQHRSLTYAAHAIGVTPAALSQTIKKLETRLDVRLFDRTTRSLNLTEAGRIYL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R++  + +  E T+ +LQ  +    G LR+  +   GQ L++  L EF  ++P I ++L
Sbjct: 69  ERISPALTNLREATE-DLQLQAGVEGGTLRLTISHPAGQVLVEPMLAEFFAMHPHIHVEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + D+  +DI  +  D  IR  + ++   +       + M   A+P YL+    P    EL
Sbjct: 128 VYDDGFVDIVREGFDVGIRNGESLEGDMVAVPLTQDLTMCFGASPAYLRTHGTPEHPDEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           ++H  I +   +      + W   +D  + E  +S  L VN   + M+  + G G+    
Sbjct: 188 EQHLCINY--RMSSSGALYKWEFNIDGKLSERSVSGPLTVNHSDTAMRAALDGIGVITGW 245

Query: 246 DYIVKDNPNLVRIMEDVITP---SFTVYFC-YPEALKNTGKLKAFRNFI 290
              + D  N  +++E V+ P   SF  ++  YP       K + F +F+
Sbjct: 246 RESMTDAFNTGQLIE-VLKPYWASFPGFYAYYPHRTHLPLKTRIFLDFL 293


>gi|222086567|ref|YP_002545101.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724015|gb|ACM27171.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 296

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 3/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V + GS + AA +L L+Q +I R I  LE  +G +LF R  +GL  T+   
Sbjct: 8   WDFYRTFLAVLQHGSLSAAARELGLTQPTIGRHIDALEEAIGAELFTRSQQGLLPTDAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            L +  +E         + +  SS  + SG +RI+ +  +G  +L   L      YPD+ 
Sbjct: 68  AL-KPYAETLANTTAALLRVASSSRDRVSGTVRISASEVIGVEVLPPILAGLQAAYPDLT 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   +   D+    AD A+R+  P Q   L+ R + +I +  +   +YL+   EP +I
Sbjct: 127 IELSASDAVEDLLQREADIAVRMVAPAQ-DVLLARYIGSIPLGLFTHRNYLERYGEPKNI 185

Query: 184 QELDKHNLITF 194
           +EL +H LI F
Sbjct: 186 RELHQHKLIGF 196


>gi|260769630|ref|ZP_05878563.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|260614968|gb|EEX40154.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|315182365|gb|ADT89278.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 298

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 134/300 (44%), Gaps = 27/300 (9%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIRVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +          ++   E +  +  P+G L+I  T+ +G   L   + EFL  YPD
Sbjct: 61  AGVLFYERAKAQLESWQSVLDETRSLNQSPAGLLKIGATLAVGSKFLMQYVDEFLQHYPD 120

Query: 122 IQIQLILDNKD--IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA---YAAPHYLKN 176
           I+IQL         ++ +D     + + + I   + +  K   + +H    YA+P YL+ 
Sbjct: 121 IRIQLTTTTPGQLPELHLD-----LFISREIDQLNSLSFKATPLFVHKAGFYASPQYLQR 175

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQ 233
              P ++ +L +HN++ +G+   + ++  N            R++        +  ++  
Sbjct: 176 HGTPSTLHDLTQHNVLCWGEQTSREVKTNN----------HKRLTLSGNFATTNPEALFY 225

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G GI +    ++K+      LVRI+ D+     TV+  YP+      +   F NF+
Sbjct: 226 AGKCGMGIVVSNHVMLKEELKQRTLVRILPDITIDQATVFAYYPKLDYQHTRTHLFLNFL 285


>gi|241113210|ref|YP_002973045.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861418|gb|ACS59084.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 298

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 120/274 (43%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ ++R F  VA+  SFT AA +L +++S++S  IS LE  +G++L  R  R +  T  G
Sbjct: 5   EFTEMRAFLEVAQERSFTRAASKLGVTRSALSHTISALEARLGVRLLSRTTRDVAPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L       +  +      L     KPSG +R+    D  + + +  L  FL   PDI 
Sbjct: 65  ARLVESIQPHFESIAAGISALGVLRDKPSGTVRLVCPDDAVELVFRSRLPAFLRECPDIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI+DN   +I     D  +RL + I    +  R    I      +P Y      P + 
Sbjct: 125 VELIVDNGFTNIVERQFDAGVRLGEAIARDMVAVRIGPDISYAVVGSPGYFAARTVPSTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIA 242
            +L  HN +     +P     + W    D      R+    V S +       L G+G++
Sbjct: 185 HDLTDHNCVNL--RLPTSGALYAWEFEKDGREFSVRVEGQLVMSNIGPAINAALDGAGLS 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +P  +V+   D+  L  ++ D   P+F  Y  Y
Sbjct: 243 YVPRDLVRQYCDSGQLKEVLTD-WAPTFQGYHLY 275


>gi|146337191|ref|YP_001202239.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146189997|emb|CAL73989.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 306

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 10/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +   VA   SF  AA  L+LS +++SR I+ LE  +G ++  R +R + LT+ G
Sbjct: 8   DFEGLALLARVAEERSFAGAARALNLSVATVSRAITRLEDRLGARVLNRTSRKVALTDFG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    + +  + E  +   +E S +P G + +A  +  G   +   L  F+  YP+I 
Sbjct: 68  RTLAERGARMLREAEEAESAARELSSRPRGTVNLAVPMSFGLREVSPLLPAFVREYPEIT 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+  D  D A+R+   +  SSLI R+L  +     A+P Y+     P + 
Sbjct: 128 LNLHLSDATVDLIGDGFDAALRI-AALPDSSLIARRLRPMGRFLVASPDYIARYGRPQTP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL+ H+ + +          ++   T  R         L V +  +++   + G GIA 
Sbjct: 187 AELNVHHCLGYA--YRARTATWHLTHTDGREAAVTPTGPLSVTNIDALLPALLDGIGIAE 244

Query: 244 LPDYIVKDNPNLVR-----IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++   +P++       ++ D   P   +YF  P A     +++    F+
Sbjct: 245 LPCFVA--DPHVAEGRLEILLPDWKLPGGGLYFITPAAHVRPARIEVLSEFL 294


>gi|221199134|ref|ZP_03572179.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221181585|gb|EEE13987.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 317

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP + ++L 
Sbjct: 67  DRCQRILAYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P ++ +L
Sbjct: 127 LSQHVPDIIDEGYDVSLQLSTAELPDSGLVSQRLGEMHSVLCASPAYLKERGTPRTVSDL 186

Query: 187 DKHN-LITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H  L     + P+    ++  N   T + P+ +      QVN   ++      G GI 
Sbjct: 187 EGHACLQIVTPIFPRDRWHLDGPNGRETFELPLPD-----FQVNIADALGAGLRAGLGIG 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ +      TVY  Y        K++ F +F+
Sbjct: 242 ALPMSTALPAFASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292


>gi|161523786|ref|YP_001578798.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351453|ref|YP_001947081.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341215|gb|ABX14301.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335475|dbj|BAG44545.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 310

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 3/190 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE      GK+R+++T D G+N L   L EF   +PD+   L 
Sbjct: 67  NCCRQALQALDDADAMLQEGRNVVGGKVRLSSTSDFGRNQLLDWLDEFTARHPDVTFSLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R+L        AAP +++    P+   +L 
Sbjct: 127 ASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFIERYGTPVDPNDLA 185

Query: 188 KH--NLITFG 195
           +   N+IT  
Sbjct: 186 RFPCNVITIA 195


>gi|111024025|ref|YP_706997.1| LysR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110823555|gb|ABG98839.1| probable transcriptional regulator, LysR family protein
           [Rhodococcus jostii RHA1]
          Length = 303

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 12/296 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR    VAR+G    AA  L +  +++SR++  LE  +G++L  R A G  LT+ G  
Sbjct: 10  DDLRYLLAVARTGRRRSAALDLGVDHTTVSRRVRALEKALGVRLLQRSADGWELTDVGRS 69

Query: 66  LHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     ++   + E   + L  S     G +RI      G   +   L +  + +P + +
Sbjct: 70  IAEKARQIEEAVQEAADVVLGISENPLRGTIRITAPDGFGSLFVAPALAKLRMSHPHLVV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI D + +++     D A+ +  PI +S L+  ++    +  Y +  Y +   EP S+ 
Sbjct: 130 ELITDTRQLNLYQSGFDLAVAVGTPI-TSRLVSERVCQYSLGLYGSEEYFRAHGEPGSLD 188

Query: 185 ELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H L+ F D + +  + D N      R +       +  N +  +      G GI L
Sbjct: 189 ELTAHPLVFFVDSLLQVGDLDLN------RHLPGVAAKFMSTNIFAHVAA-TRSGGGIGL 241

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCY-PEALKNTGKLKAFRNFIFLKARDWK 298
           LP ++   + +L RI+ D +            E+L N   ++A R  I  +AR  +
Sbjct: 242 LPAFMADQHADLRRILPDAVDVRLAFSLAARRESLTNPA-VQAVRQAIQEEARSRR 296


>gi|34498709|ref|NP_902924.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34104560|gb|AAQ60918.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 301

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 2/192 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  VAR GSF  A  +L L  +++SR+I  LE  +  +L  R  R L+LT  
Sbjct: 2   LDLNDVALFVQVARLGSFAEAGRRLGLPANTVSRRIQQLENALDSRLMQRSTRKLSLTSA 61

Query: 63  GSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G   + R  + V   L+  Q +  +   +P G +R+A T D    L    + EFL  +P 
Sbjct: 62  GEAFYQRCAASVDSLLDAGQAQTGDGG-EPGGLIRVAATADFFDFLPMEWVAEFLDAHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+  L +   D+  D  D A R  +   S  + +R  V       A+P YL +   P 
Sbjct: 121 VKIEFALSDARADLIADRIDVAFRGGELADSGYVARRLPVAGGGGLVASPAYLASRGAPA 180

Query: 182 SIQELDKHNLIT 193
           S+ EL  H+ +T
Sbjct: 181 SLAELAGHDCVT 192


>gi|269964808|ref|ZP_06179045.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
 gi|269830468|gb|EEZ84690.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
          Length = 251

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 119/238 (50%), Gaps = 13/238 (5%)

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           ++L+E G   ++    +   LE  ++ + +   +P G LR+   +  G+  L   L +FL
Sbjct: 17  VSLSEAGQLYYQQCKHLVEGLELAELAVTQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFL 76

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP + + L+L N+ +D+     D AIRL + +Q SS+I ++L +   +  A+P YL+ 
Sbjct: 77  EKYPRVDLDLVLTNQKLDLIEQGVDVAIRLGR-LQDSSMIAKRLSSRQNYVCASPMYLER 135

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYC 235
             EP ++ EL +H  +  G +      D+ W    ++     R+S  ++ NS  ++M   
Sbjct: 136 FGEPHTLSELARHQCLV-GSV------DY-WHFKENKRDKSLRVSGRIKCNSGFALMGAA 187

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G G+  LPDY V+   DN  LV ++ D       ++  YP++   + K++   +F+
Sbjct: 188 KRGLGLVQLPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFL 245


>gi|264680291|ref|YP_003280201.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210807|gb|ACY34905.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 314

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 24/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +A  GSF  A   L    S +S+++  LE  +G++L  R  R L  T +G +
Sbjct: 10  DELATLVALADQGSFAAAGRLLARHPSVLSKRMQALERRLGVRLVERTTRQLHFTNEGWR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +  H +   + E  + + +  G+LR++    +G+  +   L +F L YP++ ++
Sbjct: 70  LVEKLRQAAHLIRDAEQEAAQGAQEIRGRLRLSMPATMGRRWISPMLADFSLAYPEVALE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    + +DI  +  D AIR+   +  S L+  +L   +    A+  YL+    P    +
Sbjct: 130 VEYSERIVDIVGERFDAAIRIGN-LADSRLVATRLCDQYRLLCASSSYLERHEAPDRPAD 188

Query: 186 LDKHNLITFGDLIPKCMEDF-NW---------LATVDRPIGEPRIS-CLQVNSYLSIMQY 234
           L +HN + +  L+     DF  W         +A+V   +   R+S  +  N   +++  
Sbjct: 189 LVRHNCLGYTGLL-----DFPQWRLVQSAGKKVASVAESV---RVSGSILSNDNEALLHA 240

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G GI    D+ +  +     LVRI+    +  +  +Y   P    NTG +KAF+ ++
Sbjct: 241 AIKGVGIIAGSDWHLMPSIHAGELVRILPQWTLGEAGGIYLLRPSGQYNTGAMKAFKQWV 300


>gi|271499194|ref|YP_003332219.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342749|gb|ACZ75514.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 300

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 133/291 (45%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  + SF+ AAE+L L ++++S+ +  LE  +G++L  R  R + +T++G   +
Sbjct: 7   MRVFVRIVEAESFSRAAEKLGLPRATVSQTLKRLEVRLGVRLLQRTTRQVQVTDEGLLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++  +L+ T         +PSG++RI     L + ++  +L  F   YP I + L 
Sbjct: 67  QRCVQLLAELDETDALFSHQRQQPSGRVRIDMPHSLARQVVIPSLPAFYRRYPQISLVLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  I++  +  DC +R  + +   SL+ R L ++     A+  Y      P S++ L 
Sbjct: 127 ANDAAINVLREGVDCVLRAWQ-VDDDSLVARSLPSLPQVTCASAAYCAEFGVPDSLEALA 185

Query: 188 KHNLITFGDL-----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H ++ +  L      P        L T   P      S ++++   + +  C  G GI 
Sbjct: 186 THRMVGYFSLRTLQRYPLEFMQQGQLVTRTLP------SLVEISGADAYIAACQAGMGII 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P Y ++       L+ I+  +  P   +Y  YP       +++A  +++
Sbjct: 240 QAPRYGLESLLSGGELIEILPQLPPPDMPLYVMYPSGRFLAPRIRAVIDWL 290


>gi|218675195|ref|ZP_03524864.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 293

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 8/238 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V       GS + AAE+L +S++  SR I+ +E   G +L +R  R L+LT  G ++  
Sbjct: 8   KVLLKTVERGSASAAAEELGMSRAMASRYIAAMEDWSGTRLLHRTTRQLSLTSAGERVLD 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
           +  E+  ++     E+   +  P G LR+     L +  L   L +F   YP I++ L +
Sbjct: 68  MCREIV-RVADAVTEVASHADTPHGLLRVTAPSILAEAQLIPLLSDFADAYPRIKVDLQI 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ID+  D  D AIR+   +   SLI ++L       YA+P YL+    P +  +LD 
Sbjct: 127 SDRTIDLVQDRIDLAIRIANRLD-PSLIAKRLGQCSSLLYASPRYLQEYGIPSTPADLDD 185

Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           H  +T+  L         W L   +  I        Q N  +++ +  + G GIA+LP
Sbjct: 186 HRCLTYTHL-----GGTEWSLKNFESQIVMSVEGTFQTNDAVALRRAALSGLGIAMLP 238


>gi|218532830|ref|YP_002423646.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218525133|gb|ACK85718.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 301

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 133/292 (45%), Gaps = 10/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA SG F  AA  L +S ++++R ++ LE  +G +LF R  R + LTE G +  
Sbjct: 7   MRVFVRVAESGGFAGAARALSMSPAAVTRAVAALEALIGARLFIRTTRSVKLTEAGGRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +     S+  P+G L +   +  G+  +   + ++L  +P + ++ +
Sbjct: 67  EDCRRILAEIAEAEAAAAGSTATPTGILTLTAPVQFGRLYVLPVVTDYLARHPAVAVRAL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D  +R+   +  S L   ++ ++     AAP YL+    P + ++L 
Sbjct: 127 FLDRIVNLVEEGIDVGVRIGH-LADSGLTATRVGSVRRVVCAAPSYLERHGVPETPRDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H +I  G   P  + ++ +       +G   R+ C  V++ L+     + G GIA L  
Sbjct: 186 DHAVI--GASNPGALPEWRFGPEGRTTVGVHARLVCNTVDASLA---AALDGWGIARLLS 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           Y V        L  ++ D   P   ++   PE  +   K +AF +    + R
Sbjct: 241 YQVASAVAEGRLRILLTDDEAPPVPIHVVSPEGRRAPAKTRAFVDLAAARLR 292


>gi|51597362|ref|YP_071553.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 32953]
 gi|186896470|ref|YP_001873582.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590644|emb|CAH22286.1| LysR-family transcriptional regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699496|gb|ACC90125.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
          Length = 302

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 10/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68
           VF  +   GS   AAE L +S++  +R ++ +E   G +L +R  R L+LT  G + L R
Sbjct: 9   VFVAIVDRGSMIAAAESLEMSRAMATRYLAQMEQWAGARLLHRTTRKLSLTHAGEATLER 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +    E QES  +  G LRI+ +  LGQ+ L   + ++L  YP + + L +
Sbjct: 69  CRRMLEFAQDMDLAEGQESE-ELRGLLRISCSQSLGQSALAIAVADYLRRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ I++  +  D A+R+   +   +LI R L T +    A+P YL     P S Q+L  
Sbjct: 128 NNRAINLVEERIDLALRITNELD-PNLIARPLSTCYSVVCASPAYLSVSGIPESPQDLTV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     + +  F+  + V   +       L  N  + ++   + G+GI L P Y 
Sbjct: 187 HNCLTY-SYFGESLWHFDQ-SGVKSSVAVS--GNLSANESVVLLSGALEGAGITLQPIYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V        L++++ D    +  +Y  Y    +    L+   +F+
Sbjct: 243 VAPYIARGELIKLLPDYQPQAMGIYGVYASRRQMPTTLRTMLDFL 287


>gi|37524653|ref|NP_927997.1| DNA-binding transcriptional activator GcvA [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784078|emb|CAE12947.1| Glycine cleavage system transcriptional activator (Gcv operon
           activator) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 306

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 131/298 (43%), Gaps = 22/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S Q+  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQMKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++ +       L   L  F L YP I ++
Sbjct: 69  YYLDIKEIFTAINEATRKLQARSAK--GALTVSLSPSFAIQWLVPRLSSFNLAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   +++ D   D  D AI   R   P     L   +L   ++    +P  L       +
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRGNWP----GLRTDRLYAEYLLPVCSPSLLTGENSLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
             +L +H L+             +W A V +   + +I+  Q    +    ++Q  V G 
Sbjct: 183 PADLARHTLL-------HDSSRRDWQAYVRQLDMQQQINVQQGPIFSHSAMVIQAAVHGQ 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIAL  + + +   D   LV    DV+      Y    +     GK+ AFR ++  +A
Sbjct: 236 GIALANNVMARTEIDAGRLVCPFNDVLVSKNAFYLVCHDNQAELGKIAAFRQWVLAQA 293


>gi|22127063|ref|NP_670486.1| LysR-family transcriptional regulatory protein [Yersinia pestis KIM
           10]
 gi|45442624|ref|NP_994163.1| LysR family transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806467|ref|YP_650383.1| LysR family transcriptional regulator [Yersinia pestis Antiqua]
 gi|108813163|ref|YP_648930.1| LysR family transcriptional regulator [Yersinia pestis Nepal516]
 gi|145598998|ref|YP_001163074.1| LysR family transcriptional regulator [Yersinia pestis Pestoides F]
 gi|150260183|ref|ZP_01916911.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           CA88-4125]
 gi|153948332|ref|YP_001399953.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|162421243|ref|YP_001607603.1| LysR family substrate-binding transcriptional regulator [Yersinia
           pestis Angola]
 gi|165924899|ref|ZP_02220731.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165937387|ref|ZP_02225951.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010346|ref|ZP_02231244.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212848|ref|ZP_02238883.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167399715|ref|ZP_02305233.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167418734|ref|ZP_02310487.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167425282|ref|ZP_02317035.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167466651|ref|ZP_02331355.1| substrate-binding transcriptional regulator, LysR family protein
           [Yersinia pestis FV-1]
 gi|218927979|ref|YP_002345854.1| LysR family transcriptional regulator [Yersinia pestis CO92]
 gi|229837705|ref|ZP_04457865.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides A]
 gi|229840701|ref|ZP_04460860.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842743|ref|ZP_04462897.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229903609|ref|ZP_04518722.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|270487390|ref|ZP_06204464.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294503016|ref|YP_003567078.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Z176003]
 gi|21960116|gb|AAM86737.1|AE013920_1 putative transcriptional regulator [Yersinia pestis KIM 10]
 gi|45437489|gb|AAS63040.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108776811|gb|ABG19330.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|108778380|gb|ABG12438.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Antiqua]
 gi|115346590|emb|CAL19471.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           CO92]
 gi|145210694|gb|ABP40101.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149289591|gb|EDM39668.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           CA88-4125]
 gi|152959827|gb|ABS47288.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354058|gb|ABX88006.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis Angola]
 gi|165914861|gb|EDR33474.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165923099|gb|EDR40250.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990832|gb|EDR43133.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166206140|gb|EDR50620.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166962728|gb|EDR58749.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167050423|gb|EDR61831.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167055682|gb|EDR65466.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229679379|gb|EEO75482.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|229690223|gb|EEO82278.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229697067|gb|EEO87114.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229704082|gb|EEO91094.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides A]
 gi|262361052|gb|ACY57773.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           D106004]
 gi|262364996|gb|ACY61553.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           D182038]
 gi|270335894|gb|EFA46671.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294353475|gb|ADE63816.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Z176003]
 gi|320014130|gb|ADV97701.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 302

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 10/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68
           VF  +   GS   AAE L +S++  +R ++ +E   G +L +R  R L+LT  G + L R
Sbjct: 9   VFVAIVDRGSMIAAAESLEMSRAMATRYLAQMEQWAGARLLHRTTRKLSLTHAGEATLER 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +    E QES  +  G LRI+ +  LGQ+ L   + ++L  YP + + L +
Sbjct: 69  CRRMLEFAQDMDLAEGQESE-ELRGLLRISCSQSLGQSALAIAVADYLRRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ I++  +  D A+R+   +   +LI R L T +    A+P YL     P S Q+L  
Sbjct: 128 NNRAINLVEERIDLALRITNELD-PNLIARPLSTCYSVVCASPAYLSVSGIPESPQDLTV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     + +  F+  + V   +       L  N  + ++   + G+GI L P Y 
Sbjct: 187 HNCLTY-SYFGESLWHFDQ-SGVKSSVAVS--GNLSANESVVLLSGALEGAGITLQPIYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V        L++++ D    +  +Y  Y    +    L+   +F+
Sbjct: 243 VAPYIARGELIKLLPDYQPQAMGIYGVYASRRQMPTTLRTMLDFL 287


>gi|167624664|ref|YP_001674958.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354686|gb|ABZ77299.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 316

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 20/279 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DK+  F  V R+GSF+ AA+Q  +S S+ SR I  LE  +G+ L  R  R +  T+ G +
Sbjct: 14  DKIVYFLHVVRTGSFSDAAKQYGISASAGSRWIIELEENMGVSLLKRSTRKVVPTQAGER 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V  +++    E+Q       G +RIA+T    +  L   + E+L  YP +  +
Sbjct: 74  LFDRFCHVNTEIDDILTEIQNLGNDDRGVIRIASTPLFAKKFLSQVVGEYLCEYPYVSFK 133

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQS-----SSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++    ++D  +   D AIR     Q      S L++R L+   + A  +P Y++    P
Sbjct: 134 IVETAYEMD-HVGEVDFAIRANATYQGYQEKDSLLVKRSLLRYPLKACCSPRYIERFSLP 192

Query: 181 LSIQELDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            + +EL KHN +    L+       E      TV+          +QV     +    + 
Sbjct: 193 ETPEELKKHNCLYASTLVGGNKWVFERGGEFTTVEIA------QTVQVEDSEFLKTVALT 246

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITP--SFTVYF 271
           G+GIA LP  +++   ++ +LV I++D       F +YF
Sbjct: 247 GAGIAYLPTSLIQKELNDGSLVPILDDYSNSHFEFGLYF 285


>gi|91790325|ref|YP_551277.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699550|gb|ABE46379.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 307

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 122/278 (43%), Gaps = 18/278 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  V   GS T AA+   ++ + + R++  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QLESFVAVVARGSLTAAAKAEGVAPAIMGRRLDALEERLGVKLLVRTTRRITLTHEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L   +  +    VK SG LRI      G+  +   + +F   + D+ I L
Sbjct: 66  LEDCQRLLADLANAEASVSAGGVKASGHLRITAPAGFGRRHVAPLVTKFREQHLDVTISL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P    EL
Sbjct: 126 NLSDRVVDLAGEGFDCAVRVGD-LPDSSLVSVRMADNRRLCVATPRYLQRHGTPQHPAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + + +T   L     +   W   V+      +P G    S  QV     +  +C+   G
Sbjct: 185 ARFDCLT---LSSDASQTRGWAFQVNGELIHLKPGGPLDCSDGQV-----LHDWCLADYG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           IA    + V+    + +LV ++E    P   +Y  +P+
Sbjct: 237 IAWRSTWEVESEIASGHLVAVLEAFAAPPNGIYAVFPQ 274


>gi|88859736|ref|ZP_01134376.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
 gi|88818753|gb|EAR28568.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
          Length = 297

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 21/298 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA+SGSF+ AAE   LS+  +SR +  +E  +  +L +R  R +TLT  G  + 
Sbjct: 7   MRSFIEVAKSGSFSKAAELQGLSRLQVSRHVQEIELWLQQRLLHRTTRKVTLTSAGEDVL 66

Query: 68  RVTSEVYHKLETTQIELQ--ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +    + +  +TTQ+E+Q  +      G +RIA  I L QNLL   + +F   +P + I 
Sbjct: 67  KRCEYILY--QTTQLEVQSLQGGHTLQGTIRIAAPIGLAQNLLIAAVTKFSAQHPKVIID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +++ +++  +  +  D A+R  +      LI R+L++I     A+P YL    +   + E
Sbjct: 125 ILVSDRNSQLVDERIDIALRFTEQ-PDEQLIARRLMSIGSVICASPKYLATHPQINDLDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KHN +        C  ++      ++         ++ N  +++ Q  +   GI  LP
Sbjct: 184 LVKHNCLI------HCANEYWTFIHENQQYKVKVAGNIRANDLVTLTQAALADCGIVYLP 237

Query: 246 DYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +   NP       VR++ D       ++  Y   L  + +    R FI   A  W+
Sbjct: 238 CDLA--NPLIASKRFVRVLSDYHCADNALWAVY---LSRSYQTPLVRQFIDFIAEHWQ 290


>gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300075119|gb|ADJ64518.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 128/288 (44%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R + LT +G+  
Sbjct: 6   QISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNEGAAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE  +  + E S + SG+L I+     G+  +   L  FL  + D+ + L
Sbjct: 66  LEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRDVTLTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++  D+  +  D AIR+   +  S+L+  KL   H    AAP YL+    P S  EL
Sbjct: 126 NLNDRIADVIGEGIDVAIRI-ATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQSPDEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLP 245
            +HN +     +        W       +   ++    V N    +  + + G G+A   
Sbjct: 185 MRHNCLA----MSSEGSQRGWTLRQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRS 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V    +   LV +++    P+ ++Y  + +      +++AF +F+
Sbjct: 241 MWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFL 288


>gi|296531779|ref|ZP_06894599.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296267889|gb|EFH13696.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 298

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 14/201 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L VF VVA + SF  AA++L +++S++S+ +  LET++GI L  R  R ++LT
Sbjct: 1   MHLDLNALTVFAVVAETRSFRAAADRLGVTRSAVSQTMRKLETQLGIALLQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQG-NLKEFLLLY 119
           E G++     +    ++             PSG LR+A +  + ++ L G  L  FL  +
Sbjct: 61  EAGARFQAGIAGALAEIGQAAEAAAALRGHPSGLLRLAVS-SIAESFLSGPQLGAFLEAH 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSS------SLIQRKLVTIHMHAYAAPHY 173
           P I++ + + + + DI  +  D  +RL + I         S  QR+L      A AAP Y
Sbjct: 120 PGIRLDVTVTDAEFDIVAEGFDAGVRLGEVIAQDMIAVPVSAPQRQL------AVAAPSY 173

Query: 174 LKNCREPLSIQELDKHNLITF 194
           L     P   +EL  H  I +
Sbjct: 174 LARHGRPAHPRELPAHRCIGW 194


>gi|295699231|ref|YP_003607124.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438444|gb|ADG17613.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 318

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 142/289 (49%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  +AR GSF  A+ ++ LS S +S++I+ LE  +G+KLF R  R +++T  G    
Sbjct: 18  LQLFCHIARRGSFVAASTEMGLSPSHVSKRIAMLEAGLGVKLFQRTTRRVSVTSDGEAAL 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   ++       +   + SG LRI+T++ LG+  +   L      +P+++I L 
Sbjct: 78  QWAQKILDDVQGMADAFADRRTELSGVLRISTSLRLGRKHVSPILAMLRERHPNLEIWLE 137

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D+  +  D  +R+ + +Q   LI  K+V       A+P YL+    P+ + +L 
Sbjct: 138 LLDRRADVVGENFDIDVRVGE-VQEPHLIAHKMVESARILCASPAYLERHGAPVELNDLT 196

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLS--IMQYCVLGSGIALL 244
            H+ + F     +  +D   +  +  P GE  +     V S LS  ++Q+   G GI ++
Sbjct: 197 GHDCLLF-----RGRDDRFGVWRLSGPHGEKSVKVTGTVASNLSDIVVQWAKQGYGIVMV 251

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V ++     LVR++ D    S  V+      L ++ +++    F+
Sbjct: 252 SIWDVAESLRAGELVRVLPD-YQQSADVWAVTAARLSSSARIQVCIEFL 299


>gi|170023270|ref|YP_001719775.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|169749804|gb|ACA67322.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
          Length = 302

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 10/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68
           VF  +   GS   AAE L +S++  +R ++ +E   G +L +R  R L+LT  G + L R
Sbjct: 9   VFVAIVDRGSMIAAAESLEMSRAMATRYLAQMEQWAGARLLHRTTRKLSLTHAGEATLER 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +    E QES  +  G LRI+ +  LGQ+ L   + ++L  YP + + L +
Sbjct: 69  CRRMLEFAQDMDLAEGQESE-ELRGLLRISCSQSLGQSALAIAVADYLRRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ I++  +  D A+R+   +   +LI R L T +    A+P YL     P S Q+L  
Sbjct: 128 NNRAINLVEERIDLALRITNELD-PNLIARPLSTCYSVVCASPAYLSVSGIPESPQDLTV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     + +  F+  + V   +       L  N  + ++   + G+GI L P Y 
Sbjct: 187 HNCLTY-SYFGESLWHFDQ-SGVKSSVAVS--GNLSANESVVLLSGALEGAGITLQPIYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V        L++++ D    +  +Y  Y    +    L+   +F+
Sbjct: 243 VAPYIARGELIKLLPDYQPQAMGIYGVYASRRQMPTTLRTMLDFL 287


>gi|161522360|ref|YP_001585289.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189347995|ref|YP_001941191.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345913|gb|ABX18997.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189338133|dbj|BAG47201.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 317

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP + ++L 
Sbjct: 67  DRCQRILAYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P ++ +L
Sbjct: 127 LSQHVPDIIDEGYDVSLQLSTAELPDSGLVSQRLGEMHSVLCASPAYLKERGTPRTVSDL 186

Query: 187 DKHN-LITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H  L     + P+    ++  N   T + P+ +      QVN   ++      G GI 
Sbjct: 187 EGHACLQIVTPIFPRDRWHLDGPNGRETFELPLPD-----FQVNIADALGAGLRAGLGIG 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ +      TVY  Y        K++ F +F+
Sbjct: 242 ALPMSTALPAFASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292


>gi|218513658|ref|ZP_03510498.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 267

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 127/255 (49%), Gaps = 25/255 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE G   
Sbjct: 6   RIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121
           +R  S++  +++     ++E++ +  G+LRI+        D+GQ+L+     +F    P+
Sbjct: 66  YRSASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLI-----DFAAENPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCR 178
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H  A P +++   +  
Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKISDFRVHLCATPDFIEHHPDLE 179

Query: 179 EPLSIQELD---KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            P  I  +      N  T G +     ++  +   V  PI        +VNS  + ++  
Sbjct: 180 HPSDISNVPFIVDTNSRTQGSIRFYNPDNTTFAVAVSGPI--------EVNSPHATLRAA 231

Query: 236 VLGSGIALLPDYIVK 250
           + G GIAL+PD+I +
Sbjct: 232 LAGIGIALIPDFIAR 246


>gi|167589951|ref|ZP_02382339.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 318

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 130/290 (44%), Gaps = 18/290 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L VF  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L +T+ G  
Sbjct: 10  NRLAVFVAVVEAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLAVTDAGRA 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++    E+    +   +    G LR++  ID G  ++   +      +P + ++
Sbjct: 70  FYDACRDIMRATESALDAVSSETGPLRGTLRVSAPIDYGAQVVAPAIVALRDAHPALDVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLS 182
           LI +++ +D+  D  D AIR+ + +  S+    +L        A+P ++      R+P +
Sbjct: 130 LIANDRLVDLVADNIDVAIRIGR-LADSNYRAVQLGEYEKWPVASPAFVARWGLPRDPAA 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
           +  L    L T     P+  E  N         G+  + C   +  N+  +     + G 
Sbjct: 189 LAALPFVMLSTLPR--PQTFELENARG------GKASVRCTAHVVSNTATACRAIALAGG 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G  LL D+   D+     LVR++    +P   ++  +P     + K++AF
Sbjct: 241 GFGLLTDFSTADDVAAGRLVRLLPGWRSPPAGIHAIFPSTRLPSPKVRAF 290


>gi|330819331|ref|YP_004348193.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327371326|gb|AEA62681.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 309

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 128/290 (44%), Gaps = 15/290 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +F  AAE++ ++Q ++++Q+  LE  +   LF R  RGL LT  G  
Sbjct: 14  NALRAFEAAARHLNFRLAAEEIGVTQGAVAQQVRHLEDVLQRPLFDRLPRGLALTADGRA 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   +  +      L   S +PS  L I+T        L   L +     P ++++
Sbjct: 74  YFPAVQRAFAIVADATDTL---SRRPS-TLSISTAPSFASKWLIPRLAQLRESQPALEVR 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D K      D  D AIRL KP     L    L  + + A AAP  L   R    + E
Sbjct: 130 VIADEKLASFRGDGVDIAIRLGKPPFGKGLAAELLFPLEVFAVAAPSLLA-ARPVRRVDE 188

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L+    DL P+ +E     + VD P   PR +     S L+I    + G GIAL 
Sbjct: 189 LAGQVLLHDAHDLWPEFLEALRAGSAVD-PAKGPRFN----QSSLAI-DAAIDGQGIALT 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + +V+ +     L R+++     S   Y  +P+   ++G L+  R+++F
Sbjct: 243 SEPLVERDIAAGRLRRVLDFSFPLSLGFYVVHPQGAADSGPLRDLRDWLF 292


>gi|295700327|ref|YP_003608220.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439540|gb|ADG18709.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 292

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 20/258 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA++L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G  
Sbjct: 8   NALRAFESSARHLSFTRAAQELNVTQAAVSQQVRSLEERLGTALFKRLPRGLAMTDEGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V SE + ++E    +           + +  T  +G   L   LK F   +P ++++
Sbjct: 68  LRPVLSEAFDRIEAVLKQFDGGHFHEVLTVGVVGTFAVGW--LMPRLKSFREAHPFVELR 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N  +D++ +  D AIR        SL  R L+   +     P        P    +
Sbjct: 126 LLTNNNLVDLATEGLDFAIRFGDGTWPGSLATR-LLDAPLALLCTPETAARLTRP---DD 181

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L    L     L    M+D+ NW A      RP+  P       +S   +++  + G+GI
Sbjct: 182 LANETL-----LRSYRMDDWMNWFAAAGIAPRPVRGPVF-----DSSRLMVEAAIQGAGI 231

Query: 242 ALLPDYIVKDNPNLVRIM 259
           AL P  + +   N  R++
Sbjct: 232 ALAPALMFEREINTGRLV 249


>gi|229528534|ref|ZP_04417925.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229334896|gb|EEO00382.1| transcriptional regulator [Vibrio cholerae 12129(1)]
          Length = 313

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 15/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G  
Sbjct: 5   NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ ++
Sbjct: 65  FLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  D+  +  D AIR  +P  S+ +      +      A+P YL      L   +
Sbjct: 125 LDLSDRLTDMYANPVDIAIRYGQPADSNLVAMLLCDSNERVLCASPEYLATHPPILHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + F  ++   + +  W+ + +   GE     +Q N   +    + +  V G GI
Sbjct: 185 LQHHNCLCF--MLADTLHN-KWILSRN---GETHSVVVQGNPACNDGEVVHRLAVKGKGI 238

Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A   L D I +D  +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K 
Sbjct: 239 ANKSLMD-ISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREKG 294


>gi|171321774|ref|ZP_02910683.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171092938|gb|EDT38181.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 330

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 125/249 (50%), Gaps = 8/249 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  + + L +F     +GS + AA +L L +S++S++++ LE  +G +L +R +R   LT
Sbjct: 27  LEVNLNDLYLFVQAVDAGSMSAAARRLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLT 86

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G++          + E+ +  +   + +P+G +RI +++ + Q++L   L    L +P
Sbjct: 87  PVGTEFFEHARAAVIEAESARDAVLRQASEPAGVVRITSSVPVAQHILAPCLPALALAHP 146

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + +Q+   ++ +DI+ +  D A+R    P+  S+L+QR L    +   AAP YL     
Sbjct: 147 KLLLQIHASDRLVDIAQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPTYLARAGT 206

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H+ +  G   P+         TVD     PR+  LQ +    ++Q    G 
Sbjct: 207 PDTPADLARHDGLHPG---PQPWRLQRGGDTVDV---TPRLR-LQADESTLLLQAAAAGL 259

Query: 240 GIALLPDYI 248
           GIA LPD I
Sbjct: 260 GIACLPDSI 268


>gi|238790069|ref|ZP_04633847.1| LysR-family regulatory protein [Yersinia frederiksenii ATCC 33641]
 gi|238721882|gb|EEQ13544.1| LysR-family regulatory protein [Yersinia frederiksenii ATCC 33641]
          Length = 308

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 132/302 (43%), Gaps = 31/302 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +   G+F+ AAE+L L ++++S  +  LE  +G++LF R  R + +T +GS  +
Sbjct: 7   MRIFVRIVELGNFSRAAEKLQLPRATVSHTLKRLEHRLGVRLFVRTTRQVNITAEGSLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++    E          ++P GK+RI     L +N++   L +F   YP I + L 
Sbjct: 67  QRCLQLLSAFEEANSLFSHQRLQPEGKVRIDMPHSLARNVVIPALSDFYQRYPHITLILG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  ID+  +  DC +R   P     L  R +        A+P YL     P S+ +L 
Sbjct: 127 ANDTTIDLLREGVDCVLRAWLP-HDEQLTARNIGQQPQITCASPAYLAKYGIPTSLDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRI--SCLQVNSYLSIMQYCVLG 238
            H  + +          F+ L + D P+        E RI  S L V+   + +   V G
Sbjct: 186 GHQAVGY----------FSQLNSRDYPLEFVSQGKIESRILPSILSVSGADAYIAAGVAG 235

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+   P   +        L+ ++ D+  P+  ++  +P      G+  A R  + +   
Sbjct: 236 LGLIQAPTPGIHRQLTQGELIEVLPDMPPPTMPLFIMFP-----PGRFLAPRVRVLI--- 287

Query: 296 DW 297
           DW
Sbjct: 288 DW 289


>gi|299532743|ref|ZP_07046131.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298719378|gb|EFI60347.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 314

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 24/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +A  GSF  A   L    S +S+++  LE  +G++L  R  R L  T +G +
Sbjct: 10  DELATLVALADQGSFAAAGRLLARHPSVLSKRMQALERRLGVRLVERTTRQLHFTNEGWR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +  H +   + E  + + +  G+LR++    +G+  +   L +F L YP++ ++
Sbjct: 70  LVEKLRQAAHLIRDAEQEAAQGAQEIRGRLRLSMPATMGRRWISPMLADFSLAYPEVALE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    + +DI  +  D AIR+   +  S L+  +L   +    A+  YL+    P    +
Sbjct: 130 VEYSERIVDIVGERFDAAIRIGN-LADSRLVATRLCDQYRLLCASSSYLERHEAPDRPAD 188

Query: 186 LDKHNLITFGDLIPKCMEDF-NW---------LATVDRPIGEPRIS-CLQVNSYLSIMQY 234
           L +HN + +  L+     DF  W         +A+V   +   R+S  +  N   +++  
Sbjct: 189 LVRHNCLGYTGLL-----DFPQWRLVQSAGKKVASVAESV---RVSGSILSNDNEALLHA 240

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G GI    D+ +  +     LVRI+    +  +  +Y   P    NTG +KAF+ ++
Sbjct: 241 AIKGVGIIAGSDWHLMPSIHAGELVRILPQWTLGEAGGIYLLRPSGQYNTGAMKAFKQWV 300


>gi|299533674|ref|ZP_07047048.1| LysR family transcriptional regulator [Comamonas testosteroni S44]
 gi|298718396|gb|EFI59379.1| LysR family transcriptional regulator [Comamonas testosteroni S44]
          Length = 304

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 134/305 (43%), Gaps = 23/305 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A+  L   +S +SR+I+ LE  +G++L +R  R  ++T
Sbjct: 1   MQQDLNDLMYFAHVVDHGGFAPASRALGEPKSKLSRRIASLEARLGVRLLHRSTRHFSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+  +R    +    +  Q E+++   +P G +R+   I L  + +   + EF+ L P
Sbjct: 61  DIGASYYRHCKAMLLNAKAAQEEVEQVFSEPCGVIRVCCPIALLHSRVTSIVVEFMSLNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +++ L   N+ +D+  +  D AIR R  P++ SSL  RKL        A+P + ++   
Sbjct: 121 KVEVHLKGINRPVDLVAEGYDIAIRARTPPLEDSSLAMRKLAQRDWCLVASPSFCQHF-- 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQY 234
           P+     D  +L +  D       D  W        V      PR      +   S+   
Sbjct: 179 PIPTVPADLADLPSLSD-----ERDHKWHLIGPGGVVASIAHRPR---FVTDDMYSLRAA 230

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI- 290
            + G G+  LP  I++   +   LVR++ +  +    ++  +P      G   A R F+ 
Sbjct: 231 AIAGMGVVHLPSMILEGELERGELVRLLPEWSSKGALIHAVFP---TRRGLQPAVRKFLD 287

Query: 291 FLKAR 295
           FL  R
Sbjct: 288 FLAER 292


>gi|220915491|ref|YP_002490795.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953345|gb|ACL63729.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 313

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 126/289 (43%), Gaps = 10/289 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DW  L  F  + R+GS   AA +L + +++++R+++ LE  +G+ LF R  +G   T 
Sbjct: 20  GLDWGHLEFFLELVRTGSHARAARRLGVDRNTVARRVAALEGALGLALFERGPQGWACTT 79

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L  + S V   +               G +R+ T   L   L    +      +P 
Sbjct: 80  TGQELAELASRVEQDVLALARHADTRDRALDGTVRLTTASHLATYLFLPAVGVLRERHPG 139

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D +  D++   AD A+R+ +P + + L+ RKL  +    Y     +    +P 
Sbjct: 140 LVLEIAADQRAFDLTRREADLAVRMGRP-RDAGLVTRKLSDVAYGLYGGREVVGG--KPR 196

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +      +   D     +    WL  V       R    + NS  +++Q   LG G+
Sbjct: 197 AV-DFAADPFVGL-DEGHAAVPQERWLERV----APARRIVFRCNSTTALLQAARLGVGV 250

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP ++   +P LVR+      P   ++      L+ T +++A  +++
Sbjct: 251 AVLPRFVADRDPALVRLEGPEPAP-HELWLLVHGDLRRTPRVRAVIDWL 298


>gi|221069875|ref|ZP_03545980.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220714898|gb|EED70266.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 303

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 19/296 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D ++L  F  V   G F  A   L L +S +SR+++ LE  +G +L  R  R   +TE G
Sbjct: 5   DLNELYYFAQVVEHGGFAPAGRALGLPKSKLSRRVALLEDRLGAQLLLRSTRSFAVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++    +  + E  +  +     +P GK+R++  + L  + +   L EF+  YP ++
Sbjct: 65  KRYYQHCRAMLTEAEAAEESVALVHSEPCGKVRMSCPVALLASRVGHMLGEFMRQYPRVE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+   N+ +D+  +  D A+R+R  P+Q S L+ R L        AAP  L+    P  
Sbjct: 125 LQVDETNRRVDVIGEGLDLALRVRPPPLQDSDLVLRTLAERRQCLVAAPELLQRLGPPGG 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             +L     +  G +     E   W+     A       +PR   L   S L++    VL
Sbjct: 185 PMDLSAWPSLDMGGV----QETHRWVLHGPDAVRAEVRHQPR---LVTQSMLALRDAAVL 237

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+G+  LP+  V++   +  LV+++         ++  Y       G+L A R  +
Sbjct: 238 GAGVVQLPNMFVREELRSGTLVQVLPGWQPRPEIIHAVY---ASRRGQLPAVRTLL 290


>gi|300310322|ref|YP_003774414.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300073107|gb|ADJ62506.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 288

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD  R+F  + R G+   AAE L L Q+++ R+++ LE  +G +LF R   G   T  
Sbjct: 1   MDWDNARIFLAIYRVGTLRGAAETLELDQATVGRRLAALERSLGARLFLRTPNGYVPTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        ++    E  Q ++Q    +  G +R+A T    ++ L   L      +P I
Sbjct: 61  GEMAAAAAQQMEQGAEQLQRQMQGIDERLCGVVRLAATDVTARHFLIPALHRLRQEHPHI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    +  +++   AD A+R  +P  +  LI R L  +H   YA+  Y+K    P  
Sbjct: 121 RVVLSTSTQITNLTKREADIAVRTLRP-DAPDLIARHLKRLHTAIYASRSYVKKRGLPEP 179

Query: 183 IQELDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              L  H+++ +   + P   E     + ++  +       ++V++ L +      G G+
Sbjct: 180 GTGLKGHDVVIYQRSVSPAKSEQICGESIINAQV------AMEVSTGLVMYDCLQAGFGL 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             LP ++      LVR+     TP + ++      L  T +++A  + I 
Sbjct: 234 GELPTHVGDKASGLVRVWPQRETP-YDMWLVLHSDLNRTARVRAVADAII 282


>gi|237729772|ref|ZP_04560253.1| DNA-binding transcriptional activator GcvA [Citrobacter sp. 30_2]
 gi|226908378|gb|EEH94296.1| DNA-binding transcriptional activator GcvA [Citrobacter sp. 30_2]
          Length = 305

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 129/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTDATRKLQARSAK--GALTVSLLPSFAIQWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGDKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
             +L KH L+             +W A   R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PDDLAKHTLL-------HDASRRDWQAYT-RQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIAL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GIALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|149375267|ref|ZP_01893038.1| transcriptional regulator, LysR-family protein [Marinobacter
           algicola DG893]
 gi|149360303|gb|EDM48756.1| transcriptional regulator, LysR-family protein [Marinobacter
           algicola DG893]
          Length = 297

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 3/174 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR  + +A  G+   A E L + Q+++ R++  +E ++G++ F R+  GL LT  
Sbjct: 1   MDWDYLRYIHALAIGGTLAKAGEILSVHQTTVLRRLDQMEEQMGVQFFERNRDGLQLTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +   +E  + +L      P GK+R+A T  +   L+   + E +  YPDI
Sbjct: 61  GETAFREAERLAADMENLERQLVGQDSAPVGKVRLAATDTMVNALISPMIAELVREYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           +++++ DN  +++S   AD  +R + KP   ++L   ++ TI    Y A  Y K
Sbjct: 121 ELEVLTDNDVLNLSHREADLTLRPVNKP--QATLEGERIGTIESAIYGAASYCK 172


>gi|332530225|ref|ZP_08406172.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040346|gb|EGI76725.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 309

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 117/257 (45%), Gaps = 10/257 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA  GS   AA+ L +S + +SR +  LE  +G +L +R  R +TLT+ G     
Sbjct: 8   QVFVTVAERGSLIQAADHLEMSAAMVSRYLVSLEDWLGARLLHRTTRRVTLTDAGRLALP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +  +      S +P G+LR+   +   +  L   L  +   YP + I L  
Sbjct: 68  SCRQLLETADDVKHIAGNLSQEPRGRLRLTCALSFAEAQLTPALMAYQQRYPQVHISLAT 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +  I+++ D  D A+R+   ++  +LI R L T      A+P YL+    P ++ EL  
Sbjct: 128 TDLGINLAADQIDLAVRISNSLE-PTLIARPLATCRSVLCASPEYLRRHGTPATVDELPH 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDY 247
           H  +    L+      F         + EP +      +  +I++  +L G GI +LP Y
Sbjct: 187 HRCLAHA-LVSATQFRFRQ----GDKVVEPTVDVSFTTNETAILRRALLSGGGIGILPTY 241

Query: 248 IVKDN---PNLVRIMED 261
            V ++     LV +++D
Sbjct: 242 YVSEDLRRGELVPLLKD 258


>gi|197335704|ref|YP_002155894.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197317194|gb|ACH66641.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 311

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 139/294 (47%), Gaps = 19/294 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +FY +A++GSFT AA+Q+ +S S +S+Q+  LE  + +KL +R  R LTLT+ G + 
Sbjct: 7   QMVIFYALAKAGSFTAAAKQMGVSTSHVSKQLGALEETINVKLVHRTTRSLTLTDAGQQF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++Y  +      + +   + +G LR+  +   G   +   + +    YPD+Q+++
Sbjct: 67  FLYCEKIYSAMTEASAIMDDERDEVTGILRLGLSQSFGTMHIIPAIDKLRHQYPDLQVEV 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+  D  D  +   + +    + QR L   +    A+P YL + + P    +L
Sbjct: 127 RLFDHRADMLKDGLDLWVTNFEDLPEGYVAQR-LADSNFVLAASPDYLIDKKVPHHPLDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSG 240
            +HN +T+     +  +  +W    D   G   + C++V+         ++    + G G
Sbjct: 186 VEHNCLTYQS---RHRDYSHW----DFSKGNEAL-CVKVSGNYRVDLAEAVRDAAISGWG 237

Query: 241 IALLPDYIVKDNPN---LVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L  Y++ D  N   L++++ D   +    +Y  YP       K+ A  +F+
Sbjct: 238 IAYLASYLLTDEFNDGKLIQLLPDWKASQKMPIYAVYPSRKHLPRKISAVIDFL 291


>gi|195940570|ref|ZP_03085952.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. EC4024]
          Length = 294

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 115/238 (48%), Gaps = 9/238 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F V+A + + T AA +L +S  S+SR ++ LE ++G  LF R  R ++LT +G +  
Sbjct: 6   VELFTVLAETCNLTQAARRLGMSAMSVSRHLAQLEKDLGTLLFQRTTRAVSLTSEGEEFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    ++ ++   E +   SG L+I     +G+  +   + E +   P +++ L 
Sbjct: 66  PYARTMLEAEQSARVMFNEDTAGASGLLKITAPSGIGRRYILPLMPELMEQNPKMKVDLN 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI     D AIR+  P++ S+LI  +L +      A+P YL     P ++ EL 
Sbjct: 126 LSDDVVDIVGHGYDVAIRV-APLRDSNLIAHRLSSNPRVLCASPDYLSQFGIPTALTELI 184

Query: 188 KHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H  +    +     M+D N ++     I EPR  C  V    SI   C  G+GIA L
Sbjct: 185 NHQCLRTAMVSQWTFMKDGNLISH----IFEPRFICNNVEGVRSI---CKAGAGIAQL 235


>gi|172061445|ref|YP_001809097.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993962|gb|ACB64881.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 309

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 124/287 (43%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT  G+ 
Sbjct: 5   DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTADGAL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +      +       G+L +     + + ++   L      +P +Q+ 
Sbjct: 65  LLERGRRLLAEADELDRLFRRRDRDVVGRLNVDAPSRIARRVIAPALPSLFRRHPKLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P     
Sbjct: 125 LGSTDRTIDLVQEGVDCAIRVGR-LADSSLVVRPLGRFALINCASPDYLRECGVPEHPDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H     G   P    +  W    D     +  P  S + VN+  + +  C+ G G+ 
Sbjct: 184 L-AHGHWAIGYASPTTGRELGWEYCADGGQHTLALP--SRVIVNNAETYIASCIAGMGLI 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P + V    D+  LV +M         V   YP     + +L AF
Sbjct: 241 QIPRFDVVHLLDSGALVEVMPGHRAAPMDVSAVYPHRRHRSRRLNAF 287


>gi|170735055|ref|YP_001774169.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821093|gb|ACA95674.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 300

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 133/266 (50%), Gaps = 12/266 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++  F  +A +GS T AA++LH   S +SR +  LE ++   L  R  R L +T
Sbjct: 1   MKTTLDEMLAFVTIADTGSLTGAADKLHQPTSVMSRILRRLEEKLDTTLIRRTTRRLEMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        E+   +E  + ++      P+G+LRI   +   Q+++   +  F   YP
Sbjct: 61  EEGKLFLDYAREIIASVEFAEEQIVSQREAPAGRLRINAAMPFMQHVIAPMMPGFRDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+ +L   ++ ID+     D AIR+ + ++ S+L  R+L +  +   A+P YL+    P
Sbjct: 121 AIEAELHTSDEIIDLLEHRTDVAIRIGE-LRDSTLHARRLGSSRLRILASPAYLQKAGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
            S+ +L  H L+ F  + P+ +   +W L T D   G  RI   LQ  S  +++   + G
Sbjct: 180 ASVADLANHTLLGF--VQPETLN--HWPLRTADD--GVYRIHPALQAASGETLLTLALNG 233

Query: 239 SGIALLPDYIV---KDNPNLVRIMED 261
           +G+  L DY+    + + +LV ++ D
Sbjct: 234 AGVVCLADYMTGTHRRDGSLVELLVD 259


>gi|332995519|gb|AEF05574.1| putative LysR family transcriptional regulator [Alteromonas sp.
           SN2]
          Length = 294

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 137/278 (49%), Gaps = 24/278 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VA SGS + AA  LH++ S+IS+Q+  LE ++G+ LF R+ R L+LTE G    
Sbjct: 9   LQIFVEVAESGSMSIAARNLHMTVSAISQQLRKLEQDIGLSLFNRNTRNLSLTEAG---- 64

Query: 68  RVTSEVYHKLETTQIELQES----SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           R+  +   K+  T +E QE        PSGK+ I      G  LL   L++    +P I 
Sbjct: 65  RIYYDTSKKMLDTAVEAQERIETLQDAPSGKVNIIAPEGFGGGLLSQPLQKLCEDFPKIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLS 182
           + L L ++  DI +  AD  +    P+  ++    +L T   +   +A H L   + PL 
Sbjct: 125 VSLTLTDQPTDIIVSGADLLLGF-TPVSDTNFSSLELATWRRILCVSADHPL--AKSPLE 181

Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSG 240
             E L +++ I+   +    M+   +    D+ P+   RI   +++S  +++Q    G G
Sbjct: 182 SPEILQEYSYISHRHIEEYVMKHDKF----DKVPLTSSRI---ELDSMQTLIQLTRDGLG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
            A+LP+  V+      ++ ++  D   P +TVY   P+
Sbjct: 235 YAVLPEPEVRHLLSEGSMKQLFTDWSLPDYTVYAVTPK 272


>gi|330829333|ref|YP_004392285.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328804469|gb|AEB49668.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 296

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 131/263 (49%), Gaps = 13/263 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GS T AA+ L ++ S++S+ IS LE+ +G+ L +R  R L+LTE G  + + 
Sbjct: 9   IFAAVVEAGSMTGAAKSLGMTPSAVSQHISQLESLLGLPLLHRSTRRLSLTEAGEVVWQG 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L  T++ L E      G++RI   + +    L   L   L  +P + IQ+I D
Sbjct: 69  CRALQQTLSETELRLSEVRDALLGEVRITAPVGMAGQPLALALSPLLQAHPGLTIQIIAD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+  +  D A+R+   +  S+L+ RKL    M   AAP YL     P    +L  H
Sbjct: 129 DEKRDLIAERIDVALRV-GTLPDSTLVARKLGQTRMLLCAAPAYLARKGTPRMPDDLATH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALLPD 246
           + +  GD++       N L   D   GE R+   + +  N+ L + Q+ + G GI+L P+
Sbjct: 188 DWLC-GDML------GNGLLLQDEKGGEHRVRFKAKVLCNNVLPLRQFALAGQGISLQPE 240

Query: 247 YIVKDNPNLVRIMEDVITPSFTV 269
             + ++    R++E  + P F V
Sbjct: 241 GEIGEDLAQGRLLE--LLPGFRV 261


>gi|332716929|ref|YP_004444395.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325063614|gb|ADY67304.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 305

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSF  AA  +   +S++S+ +  LE  + +KL  R  R LT+T +G   +
Sbjct: 7   IRAFVRVVEAGSFAKAASTMGAPRSTVSKLVQDLEASLSLKLLERTTRSLTVTPEGVAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +    E     +   GKLR+         +L   L EF  LYP+I++ L 
Sbjct: 67  ERALRLIADFDEMNNEATRGRLATRGKLRVDVGGTFANTILIPRLPEFYALYPEIELHLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  +  DI  +  DC IR    + S+SL+ +KL ++ +   A P YL+    P S  +L 
Sbjct: 127 VTERQADIVEEGIDCVIRAGD-LPSASLVAKKLCSVEIVTCATPAYLEKYGVPASPSDLQ 185

Query: 188 K-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGI 241
           + H  + +     + ++     A V    G+ +I       L  +   + +   + G GI
Sbjct: 186 RDHVFVQY--FFARSLK----AAPVRLMNGDEKIEIYSPIKLSTSDATAHLHGILAGLGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               +++ + +     LV I++D   P + V+   P     + K + F +++
Sbjct: 240 GQTFEFLARAHIARGALVPILQDWAPPRYPVHIVRPAGRFPSVKYRVFADWV 291


>gi|296533811|ref|ZP_06896350.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296265862|gb|EFH11948.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 302

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 124/273 (45%), Gaps = 24/273 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +++   + A  GSF+ A  +L L+ S++SR +S LE  +G  L  R  R L  T
Sbjct: 1   MDNRAGEMQAVLLAADLGSFSAAGRRLGLTPSAVSRLVSRLEDRLGTPLLLRSTRALRPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G         +  ++E T+  L  +   P G LR++ T+  G   L   L EFL  YP
Sbjct: 61  AEGEVYLARARRLLAEIEETE-RLVTAGALPRGPLRVSATVGFGTQCLVPLLPEFLARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + L L +  +D+  +  D A+R    ++ S+L  R ++       AAP YL     P
Sbjct: 120 GITLDLSLSDGLVDLVEERTDIALRA-GALRDSALKARLVLRSRRVVVAAPAYLARHGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISC------LQVNSYLSI 231
              Q++  HN + F         +F   A    P  +P   R+S       L+ N+  ++
Sbjct: 179 RLPQDIAAHNCLGF---------NFRHRAG-GWPFRDPQTGRLSTEATPGNLRANNGPTL 228

Query: 232 MQYCVLGSGIALLPDYIVK---DNPNLVRIMED 261
            Q C+ G G+A L  + V+   D   LV ++E+
Sbjct: 229 RQLCLAGLGLARLARFHVQAEIDAGRLVPLLEE 261


>gi|294624343|ref|ZP_06703042.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601359|gb|EFF45397.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 304

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 131/285 (45%), Gaps = 7/285 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GS T  A  L LS +  S+++  LE E+G++L +R  R L  T +G +L   
Sbjct: 9   LFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTAEGQRLAER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L+    +L+ES+    G LR+  +   G+  +   L EF   +P ++I   L 
Sbjct: 69  GRVLVEDLDALAEDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPRLRISAHLS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+     D AIR+  P++ S L+ R++        A+P YL+    P +  EL +H
Sbjct: 129 DDLVDLVKQGFDLAIRI-GPLEDSGLVARRIADNRRTLAASPAYLQRHGTPRTPDELAQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             +    +     +D   L T D  +   R+ S  + N    +    V G GIA+   + 
Sbjct: 188 AGVLL--MGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAVHSYWH 245

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + D   + +LV++M D   P+  +    P       +++AF +F+
Sbjct: 246 IADELRSGHLVQVMPDYPPPTSQISAVMPARRLQPPRVRAFVDFL 290


>gi|209543840|ref|YP_002276069.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531517|gb|ACI51454.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 314

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 135/297 (45%), Gaps = 35/297 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L  F  VAR  SF  AA +  +S S++S  I  LET +GI+LF R  R + +T  G + L
Sbjct: 9   LETFVAVARHRSFRKAAAERGISASALSHIIRDLETSLGIRLFNRTNRTVRITAAGEQFL 68

Query: 67  HRVT------SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           HRV       +E Y ++ T +        KP G LR+       + +++  L  F+  YP
Sbjct: 69  HRVAPALGELTEAYEQINTLRD-------KPRGTLRLNVPRSAAELVIRPLLGRFMSEYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI-----QRKLVTIHMHAYAAPHYLK 175
           DI ++++ ++  +DI     D  IR+ + ++   +      QR+   +      AP Y  
Sbjct: 122 DITLEVVTNDGLVDIVAAGFDAGIRITERLEQDMIAVPVGPQRRFAVV-----GAPSYFA 176

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQY 234
           +   P    EL  HN    G   P  +    W    D    E  I   L V+ ++ ++Q 
Sbjct: 177 DRSVPRHPGEL--HNHACIGRSYPSGVLR-TWTFAKDAETYELTIRGPLIVDEHILMLQG 233

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
            + G GIA + + +V++     +L+R++ED   I P F  + CY         L+AF
Sbjct: 234 ALDGVGIAYVYESLVEEYLREGSLIRVLEDWCPIMPGF--FLCYHGRRHIPATLRAF 288


>gi|332524992|ref|ZP_08401176.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332108285|gb|EGJ09509.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 311

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 24/262 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +A  GS + AA  L L + ++SRQ+  LE  +  +L +R  R L LTE G++++   
Sbjct: 15  FAHIAAQGSISGAAASLGLDKGAVSRQLRALEDLLDTRLMHRSTRRLVLTEAGAQVYERA 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +LE TQ +      +P G L ++ ++  G   L   +  FL  YPD+++QL L +
Sbjct: 75  QRLLQELEQTQADAVSLRSQPRGVLTVSASVAFGTRHLVPLVPAFLQRYPDVELQLCLLD 134

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D   +  D  +RL        L+ ++L  I     A+P                   
Sbjct: 135 RHVDPMEEGVDVLLRLCD-TPPDPLVAQRLCAIDYAVVASPGLAHGA------------G 181

Query: 191 LITFGDLIPK-CM------EDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
           + T  DL  + C+          W  T      E P  + + VNS  ++    V G G A
Sbjct: 182 VTTPADLRDRPCLFYGFKSRSARWRFTQGAATQEVPVTTRVSVNSSEAVRDLAVRGLGFA 241

Query: 243 LLPDYIVKDN---PNLVRIMED 261
           LLP + V D+     L+R++ D
Sbjct: 242 LLPRFAVDDDLAAGRLIRVLAD 263


>gi|238918759|ref|YP_002932273.1| DNA-binding transcriptional activator GcvA [Edwardsiella ictaluri
           93-146]
 gi|238868327|gb|ACR68038.1| transcriptional regulator, LysR family [Edwardsiella ictaluri
           93-146]
          Length = 318

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 131/299 (43%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 12  NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 72  YYLDIKEIFSALNDATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNSAYPGIDVR 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++     D  D AI   +       ++R L   ++    +P  L           
Sbjct: 130 IQAVDREEGKLADDVDVAIFYGRGHWPGLRVER-LYAEYLMPVCSPQLL----------- 177

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238
           L +H L    DL    +       +WLA   R +G   I+  Q    +    ++Q  V G
Sbjct: 178 LGEHPLKDPADLAYHTLLHDTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIAL+ + + +   +   LV    DV+      Y    +A  + GK+ AFR +I  +A
Sbjct: 237 QGIALVNNVMAQTEIEAGRLVCPFNDVLISKNAFYLVCQDAQADLGKISAFRQWILARA 295


>gi|227819487|ref|YP_002823458.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227338486|gb|ACP22705.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 301

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 126/291 (43%), Gaps = 22/291 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V R+GS + AA +++L+QS++SR +  LE ++G  LF RH + L  TE      
Sbjct: 19  LSAFEAVLRTGSISAAAREVNLTQSTVSRLVQSLEEQLGRPLFERHRQRLIPTEAAQAYG 78

Query: 68  RVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           R   +V   L+  Q    E S  P  G L +A     G   L   L  FL   P + I L
Sbjct: 79  R---DVTRALDLIQRGSMEFSANPGGGALSLAILPAFGTRWLAPRLGRFLTKNPGVTINL 135

Query: 127 ILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
               K  + + +  D AI       +      L + +L      A  A H ++      S
Sbjct: 136 ATRLKRFNFAAEGFDAAIHFGTDDWRDAGHMMLFEERLTACISPALLAEHPVR------S 189

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ++    L+    L  +      W A  D     P ++ + ++ + ++ Q  + G G+A
Sbjct: 190 VNDMAGLPLL---QLETRSNAWATWFAAQD--AEAPSVTGMLLDQFATMTQAAISGLGVA 244

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLPDY+     +   LV +++  I  S   +  +P +      L+AFR+++
Sbjct: 245 LLPDYLADIEIEEKRLVPLLKRAIPGSGAYWLVWPRSRAKYPPLEAFRSWL 295


>gi|188992544|ref|YP_001904554.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734304|emb|CAP52514.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 335

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 96/185 (51%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F     +GS    A++L +S +++S+ I+ LE  +G++L +R  R L LTE+G+   
Sbjct: 7   IRSFVSTVDAGSIAGGAKRLGVSPAAVSQNIARLEQHLGVRLLHRTTRSLALTERGALYV 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   LE  +  +      P+G+LR+A+T    +++L   L      YP ++I+L+
Sbjct: 67  EQVRQIERDLERARQLVAGPQQAPAGRLRVASTAAFARHVLAPMLPLLRQRYPRLEIELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +  + +  D ++R+   ++   L+ R +  +     AAP YL+ C  P +  EL 
Sbjct: 127 CTDRVVQHAQESVDVSLRIEAQLE-DGLVARHIANVPFVVCAAPAYLQRCGAPQTPDELK 185

Query: 188 KHNLI 192
            H+ +
Sbjct: 186 YHDCL 190


>gi|254300949|ref|ZP_04968393.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157810837|gb|EDO88007.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 309

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 125/289 (43%), Gaps = 11/289 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  +  LE EVG  L  R  R L +TE G
Sbjct: 14  NLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEVGASLVVRTTRRLNVTEAG 73

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    ET    +   +    G LR++  +D G  ++   L      +P ++
Sbjct: 74  RAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPALE 133

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P S 
Sbjct: 134 IELQCDDRVVDLVRDNLDVAIRLGR-LADSNHRAAKLGGFERWLVASPAFVARHGAPASP 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240
           + L     +    +    +E  N  A  +R      + C +    N+  +     + G G
Sbjct: 193 EALGALPYVMLSTVPRTTLELANAHAHGER----ASVRCRRAFASNTATACRAAVLAGGG 248

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +   +   D+     LVR++     P   ++  +P A   + K++A 
Sbjct: 249 FGVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRAL 297


>gi|160940440|ref|ZP_02087785.1| hypothetical protein CLOBOL_05330 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437020|gb|EDP14787.1| hypothetical protein CLOBOL_05330 [Clostridium bolteae ATCC
           BAA-613]
          Length = 307

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 149/308 (48%), Gaps = 32/308 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  + ++FY VA++G+ + AA++L++SQ +IS+ IS LE  +G+ LF R +RG+ LT
Sbjct: 15  MEQNLSQYKIFYEVAKAGNISKAAKELYISQPAISKAISKLEDSLGLSLFTRSSRGVQLT 74

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L   T E +  L+  + EL+       G LRI  +  L + +L   LK F+  YP
Sbjct: 75  SEGEILFEHTREAFDALDRGEQELKRIQEFDIGHLRIGVSNTLCKYILLPYLKTFIDQYP 134

Query: 121 DIQIQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
            +++ +           L+ + ID+ +  A+ ++R          IQ   VT        
Sbjct: 135 HMKVTIESQATAQTLARLEQQKIDLGL-VAEPSVRRDLAFIPVMDIQDTFVT-------T 186

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRI---SCLQVN 226
           P+YL+N    L ++E    +L   G+++   ++  N     VD  + E  I     L+V 
Sbjct: 187 PNYLEN----LYLREGQDTSLFETGNIM--LLDTSNMTRHHVDEYMAENNIFPHQILEVT 240

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           +   ++++  +G GIA +   +V+   D+  LV I  D+     T+ F Y  A      L
Sbjct: 241 TMDLLIEFAKIGLGIACVIKELVQKELDSGMLVEIPLDIPIHRRTIGFAYHPA-NQAMAL 299

Query: 284 KAFRNFIF 291
           K F  F++
Sbjct: 300 KTFLEFLY 307


>gi|89067774|ref|ZP_01155228.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516]
 gi|89046744|gb|EAR52799.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516]
          Length = 294

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 108/248 (43%), Gaps = 12/248 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F    R  SF  AAE L ++Q ++++Q+ GLE  +G++LF R  RGL  TE G  
Sbjct: 11  NGLRAFAAAGRHLSFRAAAEDLGVTQGAVAQQVRGLEEALGLRLFLREPRGLAFTEAGRA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   +  + +L      L+ +   PS ++ I+ T       L   L E    +PDI ++
Sbjct: 71  YHAAVTRAFAQLLEATGALRAT---PS-RVTISVTPTFASKWLIPRLGELGEAHPDIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +    D  D A+R  +P   +SL    L    + A  AP  +     PL    
Sbjct: 127 ITATDRVLSFHGDGIDLAVRQGRPPFGASLRANLLFAQEVVAVCAPGLVAGESLPLDAAG 186

Query: 186 LDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             +  L+    DL P   E         RP+   R   L++N     +   + G GIAL 
Sbjct: 187 TARRTLLHDTHDLWPAFAE-----VAFGRPVAPAR--GLRLNQTSLTLDAALAGQGIALA 239

Query: 245 PDYIVKDN 252
             ++V  +
Sbjct: 240 SRFLVARD 247


>gi|314947141|gb|ADT64691.1| LysR family transcriptional regulator [Alcaligenes faecalis]
          Length = 313

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 128/279 (45%), Gaps = 13/279 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+ + GS+T AA +L +S++++S+ I+ LE   G+ L  R  R + LTE G 
Sbjct: 10  WSHLHWLVVLEQQGSYTAAAARLGVSKAAMSQHIAELERAAGVPLVRRTTRSMRLTEAGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T   + ++  +   +++ S  P G LR+   + L +  L   L EF    P++++
Sbjct: 70  RLVDDTRAPFERIAHSFAGVRDLSGVPRGLLRVTAPVALARQQLVPRLAEFTRKNPEVRL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++   ++M+  D AIR    +  +  +   L        A+  YL+  + P + +
Sbjct: 130 ELELSDRISSLAMEGFDLAIRHAASVPDTH-VAWPLCDTRSVVVASRAYLRRHKAPKTPE 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISC-----LQVNSYLSIMQYCVLG 238
            L  H+ + +    P+  E   W        G+  R++         N+  ++    + G
Sbjct: 189 ALSAHDCLHY----PRAQETPTWTFEPLSGRGDAERVTVAVAGPFSANNSEALRDAAIAG 244

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEAL 277
            GIALLPD+  +      +++E  + P +     + E L
Sbjct: 245 LGIALLPDFSAQAALKAGKLVE--VLPGWKPVGTFAEQL 281


>gi|116249122|ref|YP_764963.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253772|emb|CAK12166.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 299

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 16/293 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  LR F + A   +F   A +L ++ ++++R I+ LE ++G++LF R  R ++LT  G
Sbjct: 3   DYKLLRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEEDLGVQLFVRTTRQVSLTTDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +            L+  + +L  +     G+LRI+     GQ +L   L  F   YP I 
Sbjct: 63  AIFAAQIQPAVQTLDNARKDLMNTHKADHGRLRISAPTWFGQQVLPPILSAFRERYPKIS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP-HYLKNCREPLS 182
            ++ L +  ++I  D  D AIR+         I RK+  +H    AAP     + + P  
Sbjct: 123 FEISLADGLVNIIDDDYDLAIRISAAPSDKFTIWRKISVVHRILVAAPGSRFCDMKHP-- 180

Query: 183 IQELDKHNLITF-GDLIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             EL   + + + GD   +   + D +  AT+    G      +  NS   +      G+
Sbjct: 181 -NELIPDDCLAYSGDSKRETWALSDGSGSATIS--AGR----AVSANSGEVLASMAADGA 233

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+A+LP + V ++     L  +++D   P   +   YP       ++ +F  F
Sbjct: 234 GVAMLPKFHVAEHLRTGRLAHVLQDWSPPDLWLTLYYPPYQALPPRIASFSKF 286


>gi|83716438|ref|YP_438448.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650263|gb|ABC34327.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 298

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 135/303 (44%), Gaps = 34/303 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-- 63
           + LR F V AR  +F  AA ++ ++Q ++++Q+  LE  +G++LF R  RGL LT  G  
Sbjct: 13  NALRAFEVSARHLNFRAAAGEIGVTQGAVAQQVRHLEDTLGVRLFERLPRGLALTADGLA 72

Query: 64  --SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             + + R  + +     T ++  + SSV       I+TT       L   L  F   +PD
Sbjct: 73  YFADVRRALNLIGDA--TDRLAKRRSSVT------ISTTPSFASRWLIPRLASFGDEHPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL----KNC 177
           + I++I D++      D  D AIR  KP     L+ R L  + +HA  +P  L       
Sbjct: 125 VDIRVIADSQFATFQGDGVDLAIRYGKPPFGKGLVARLLFPVDIHAVCSPALLAPSGARA 184

Query: 178 REPLSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           R+ L+ Q L  D H      DL P+ +      A VD P   PR +     S L+I    
Sbjct: 185 RD-LAGQVLLHDAH------DLWPEFLAALPERAAVD-PAKGPRFN----QSSLAI-DAA 231

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G G+AL  D +V    +   L R+ +  +  S   Y  YP   +    +     ++  
Sbjct: 232 IAGHGVALASDQLVARDIEAGRLRRLFDFALPLSIGYYIVYPNEPRRPDDIAKTEAWLIR 291

Query: 293 KAR 295
           +AR
Sbjct: 292 EAR 294


>gi|296159338|ref|ZP_06842163.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295890322|gb|EFG70115.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 309

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 7/201 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F+ AA QL  + S++SRQI  LE  +  +L  R  R + +TE G+++ 
Sbjct: 13  MAVFARVVDAGNFSVAARQLGSTPSTVSRQIKRLEDALATRLLERSTRTVRVTESGAQVA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++            + + KP GK+ ++      ++++   +  FL  Y ++ +QL+
Sbjct: 73  RFCRDMVSAASGAVDAAGQLAGKPQGKVSVSAPTQFAKSVIHPLIPGFLRAYDEVDLQLL 132

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++D+D   D  D  IRL + P Q   L  R+L  +     A+P YL+    P   ++L
Sbjct: 133 FTDRDVDPLADDIDLVIRLTEHPPQ--GLAGRRLGAVRWLLVASPAYLRERGTPAQPRDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            KH  I  G+      +D  W
Sbjct: 191 LKHACIYLGE----TADDNRW 207


>gi|260429094|ref|ZP_05783071.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260419717|gb|EEX12970.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 293

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 126/288 (43%), Gaps = 16/288 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AAE L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAFQVARLGTVSGAAEVLGVHHATVIRHIDALEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       ++      SG+L + + I+    L+ G L  F   YP+I 
Sbjct: 63  QDLARVAQTTDDQFSQLAGRIKGQGEGVSGELMVTSLINF-SPLMVGALASFQQAYPEIV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +   +   +    A  A+R     Q    + +      +  Y +  Y++    P   
Sbjct: 122 VRYLTGARLFRLEYGEAHVALRAGSVPQEPDNVVQSFARQAVALYGSRSYIEARGMPADE 181

Query: 184 QELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCV-LGSGI 241
           + L  H+ +   D  P     +  W+    R I   R+     +    + Q  V  G+G+
Sbjct: 182 EALRDHDFVGHDD--PDSRAPYAIWM---KRNIPFERVVFRTEDG--RVQQEAVRAGAGL 234

Query: 242 ALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAF 286
             +   +   +P LV+I+   ED  +P + V       L  T K++AF
Sbjct: 235 GFIAVQLAAKDPELVQILAPREDWSSPLWLVTHV---DLHRTPKVQAF 279


>gi|330969281|gb|EGH69347.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 315

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILASVEEAEAEASDAHARPAGQLKMHSMPGVGQHYVIDAIARYRRNHPDVAFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K         +L
Sbjct: 126 TMTHRVPDLLEEGYDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAHKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+        WL   D P G+  +    S L VNS  ++      G G+ 
Sbjct: 186 LNHACLR---LVSPVFPLDKWL--FDGPEGQEMVTINSSPLLVNSADAMKTAISSGMGVG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y   +   N  LVR++ D  +    +Y  YP            R ++  K R W
Sbjct: 241 ILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPS-----------RQYLDAKIRTW 287


>gi|330721921|gb|EGG99870.1| Glycine cleavage system transcriptional activator [gamma
           proteobacterium IMCC2047]
          Length = 297

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 137/299 (45%), Gaps = 27/299 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F   AR  SFTHAA +L+L+Q+++S QI GLE ++G  LF R ARGL LT  G   H
Sbjct: 11  VRAFEAAARHLSFTHAATELNLTQAAVSNQIKGLENQLGCVLFIRLARGLELTSAG---H 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                V   ++  +   QE   +   K L I   +    N L   +  F+  +PDI +++
Sbjct: 68  AYLPAVQESIDRLRAATQEIFGQGRSKLLTINVNLSFFINWLAPKMSRFVAQHPDINLRM 127

Query: 127 ILDNKDIDISMDYADCAIRLR------KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
             +  D  I  D AD  + +R      K  Q+  L   KLV +      +P+YLK     
Sbjct: 128 TTNIWDSYID-DSADNDLEIRYGHGEWKGKQADRLTWDKLVPV-----CSPNYLKTSAPL 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +  ++  H L+     +    E +  WL+ T  +PI   +    Q ++  + ++    G
Sbjct: 182 KTPDDIVNHTLLH----VIGFEEGWGYWLSQTEHKPIKLDQ--RFQFDTLATTLEMAAHG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL    ++ +   +  LV  +E+ +      Y  YP +  N  +   FRN++  +A
Sbjct: 236 VGLALGRTDMITEMIKSGRLVIALEEKVVTEEAFYLVYPSSKLNYSQATDFRNWLLEEA 294


>gi|209695089|ref|YP_002263018.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
 gi|208009041|emb|CAQ79271.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
          Length = 303

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 9/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  + +  SFT AA+ L +S++ +S+QI  LE  +G++L  R  R  +LTE G      
Sbjct: 10  VFNALHQQQSFTKAAQLLEISRTQVSKQIQLLEERLGVQLVQRTTRSFSLTEAGQSFAVH 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + +  ++   + EL  +     GKLR+        N +   L E    YP + +++ L 
Sbjct: 70  CANIADEINEAENELLSNVDNLQGKLRVGIAQSFATNHILPYLSELHQRYPLLNVEITLF 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID+  +  D  I +         + R L+  H    A+P YL     P    +L KH
Sbjct: 130 DHKIDVIAEQLDLWIGVMDS-PPEGFVARHLIDCHFVLVASPSYLSIQGIPYHPYDLKKH 188

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
           N +T+   + +  +D  W    D    + ++S   +++S  +I    + GSGI  +  Y+
Sbjct: 189 NCLTY---VSRERKDNVWGFHKDNDNLQIKVSGNYRIDSADAIRNATIAGSGIGYVATYL 245

Query: 249 VKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + D      L++++ D  +  S  +Y  YP       K+  F  F+
Sbjct: 246 LSDELRTGKLIQLLPDWELNQSMPLYAVYPRRKFLPKKVHVFMEFV 291


>gi|156932715|ref|YP_001436631.1| DNA-binding transcriptional activator GcvA [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156530969|gb|ABU75795.1| hypothetical protein ESA_00503 [Cronobacter sakazakii ATCC BAA-894]
          Length = 305

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 132/298 (44%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   E++ +L     +LQ  S K  G L ++       + L   L  F   +P I ++
Sbjct: 69  YFQDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSSWPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGDKPLKA 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L +H L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLARHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|186470559|ref|YP_001861877.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196868|gb|ACC74831.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 318

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 136/289 (47%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR  SF  A+ ++ +S S +S++I+ LE  +G+KLF R  R +++T  G    
Sbjct: 18  LQLFCTVARRASFVTASAEMGISPSHVSKRIALLEKSLGVKLFMRTTRRVSVTSDGEAAF 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   ++            P G LRI+T++ LG+  +   L      YP ++I L 
Sbjct: 78  QWAQKILDDVQGMADAFAGLKSDPRGVLRISTSLRLGREHVSPILSLLRKRYPGLEIWLE 137

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  IR+   IQ   LI  K+V       A+P YLK    P ++ +L 
Sbjct: 138 LLDRRVDLVGEGFDIDIRVGN-IQEPHLIAHKIVGSARILCASPEYLKRAGTPRTLADLA 196

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
           +H+ + F +   +      W  T   P GE  +     +  N    + Q+ + G GI ++
Sbjct: 197 QHDCLLFRE---RDQRFGAWRLT--GPDGEKSVKVTGPIASNHSDIVQQWALDGDGIIMV 251

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V    ++  LVR++     P+  V+        ++ KL+   +F+
Sbjct: 252 SVWDVASSLESGALVRVLPQHHQPA-DVWAVTSARASSSAKLRVCVDFL 299


>gi|91777741|ref|YP_552949.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690401|gb|ABE33599.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 323

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 136/298 (45%), Gaps = 13/298 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++    VA +G F+ AA++L ++ SS++R +  LE  +G  L  R  R ++LT+ G    
Sbjct: 24  IKTLLEVADAGGFSKAAQRLGVATSSVTRLMDSLEASLGTALLTRTPRKVSLTDAGIAYV 83

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++V   L      + +S   P G LRI+      +  L  +L  FL   P + + ++
Sbjct: 84  EQVAKVLDDLAEADESVFDSGASPVGALRISVPSTYSRLCLAPHLAAFLCENPRVFLDVV 143

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+++D  D AIR+    + +SLI +KL     +  A+  YL+    P + Q+L 
Sbjct: 144 VADHFADLALDRIDVAIRIGLADRDASLIVKKLADNPRYVVASHDYLERSGTPQTPQDLA 203

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H  + F            W  T  R     R+     L  N+   +++  + G GIALL
Sbjct: 204 DHECLRFA-YGGGYRTHQTW--TFQREGAGQRVDVRGHLLSNNLDILLEAVMAGRGIALL 260

Query: 245 PDYIVKDN---PNLVRIMEDV-ITP---SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P++ V+ +     L+R+ E    +P      VY  Y    + + K++A   F+  + R
Sbjct: 261 PEWQVEADIRAGRLLRLFEHFDASPQAGDAVVYAAYLPNRRQSSKVRALVQFLETRLR 318


>gi|296315216|ref|ZP_06865157.1| transcriptional regulator, LysR family [Neisseria polysaccharea
           ATCC 43768]
 gi|296837853|gb|EFH21791.1| transcriptional regulator, LysR family [Neisseria polysaccharea
           ATCC 43768]
          Length = 296

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 127/276 (46%), Gaps = 8/276 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L  F  +A++ SF  A + L +S S++S  +  LET + ++L  R  R ++LTE G
Sbjct: 3   NFNELNYFLTLAQTQSFVKAGQLLGISSSALSHSMKNLETRLNLRLLNRTTRNVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S +Y  +      L +    PSG +RI       + +L   LK  L  YP I+
Sbjct: 63  QQLFDQLSPLYQAINHEVDALNDFLNTPSGLIRINAPTLAAEAVLYPKLKPILNQYPKIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++D++  DI  +  D  +RL   +    +       + M   A+P YL     P +I
Sbjct: 123 LEIVVDDRWADIVKEGFDMGVRLGNDVAKEMVAVPISAPLKMALVASPDYLAQHGSPKNI 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L +H LI    L  +   +  W     + +    P+ S   +N++L  +Q    G GI
Sbjct: 183 DDLQQHRLIG-AKLSAEHGTEMQWEFKYKKELITFTPK-SQFSINNHLR-LQAVSDGLGI 239

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274
           A +    V D  N   L+ ++ +       +Y  YP
Sbjct: 240 AWIAHMSVADALNSGHLIELLPEYAMTYEPLYLYYP 275


>gi|222149434|ref|YP_002550391.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221736417|gb|ACM37380.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 305

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 140/302 (46%), Gaps = 32/302 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF  VAR   FT AAE+L ++Q+++S QI  LE  +G  LF R +R ++LTE 
Sbjct: 7   FPVNALRVFEAVARHNGFTRAAEELGMTQTAVSYQIKLLEDNLGTLLFLRTSRQISLTEA 66

Query: 63  GSKLHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G +L   T E +  L E   +   E+S      L I +T     + L  +L  F L +P 
Sbjct: 67  GERLLPKTREGFELLREAVALARHEASE----VLEIHSTPTFASHWLARHLGSFQLQHPG 122

Query: 122 IQIQLIL-DNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHY---LKN 176
           I ++L+  D K  D + D  D  I + K P+  + LI   ++ +      +P     +  
Sbjct: 123 IAVRLLRSDEKQRDFARDGGDVGIHIGKEPV--AGLICHPILKLDYAPMLSPALADSIGG 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDF--NWL--ATVDRPIGEPRISCLQVNSYLSIM 232
            REP  + +L +         +  C ED+  +W   A +  P+  P    L     L + 
Sbjct: 181 IREPADLLKLPR---------VSSC-EDWWADWFHSAGIASPL--PASIGLDAQGALDLQ 228

Query: 233 QYCVL-GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
               + G G+A+L  + V++   +  L++  E ++      +  YP + +   K+KAF  
Sbjct: 229 AGAAMAGHGVAILSPFYVEEELASGRLIQPFELLLGDEQIYWLVYPPSRRTMPKVKAFHQ 288

Query: 289 FI 290
           ++
Sbjct: 289 WL 290


>gi|167576740|ref|ZP_02369614.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 297

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 134/303 (44%), Gaps = 25/303 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE +  ++L  R  R  T+TE G
Sbjct: 3   DLNDLYYFVKVVEHGGFTQAGRALGVPKSTLSRRIAALEAQYDVRLLQRTTRHFTVTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E  +  ++    +P G +R++    L +  + G +  F+ ++P +Q
Sbjct: 63  REFYDRCLGVLVEAEAAREVIERKHAEPQGIVRLSCPTALLEYRVSGLVARFMAIHPKVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAPH L     P S
Sbjct: 123 VHLEATNRRVDLLSEGIDLALRVRFPPLEDSGLVMRVLGDSPQRLVAAPHLLGGRDLPAS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235
             EL     + +G   P+     + L  +  P G        PR      +   ++    
Sbjct: 183 PDELAGVPSVDWGP--PR-----HHLWQLVGPQGVEAQLRHHPRFIT---DDMHALRDAA 232

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291
           + G GIA LP  +V+D   +  LV ++   +     ++  +P      G L   R  I F
Sbjct: 233 LHGVGIAQLPCMVVEDDLRDGTLVDVLPGWVPKGGVIHAVFP---SRRGLLPRVRLLIDF 289

Query: 292 LKA 294
           L A
Sbjct: 290 LAA 292


>gi|170731844|ref|YP_001763791.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169815086|gb|ACA89669.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 305

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 128/305 (41%), Gaps = 35/305 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G  
Sbjct: 10  NALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGRD 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + ++      +  S    SG L ++ T       L   L +F    PD+ +Q
Sbjct: 70  YLPPVRNAFRQIADASQRV--SGAADSGVLTVSVTPFFASAWLVPRLAQFRQACPDVDLQ 127

Query: 126 LILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  +   D + D  D AIR  L + I    L   +L+T+ + A A+P  +     P + 
Sbjct: 128 VLTSHALADFARDGVDVAIRHGLGRYI---GLCSERLLTVEIVALASPELVARLGMPATP 184

Query: 184 QEL----------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            EL           K   I FG    + ++DF          G PR      +  L  +Q
Sbjct: 185 AELVGWPQLHDAERKGWHIWFGA---QRIDDF----------GPPRGPAFDDSGLL--LQ 229

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V G G  LLP  +V+    +  LV++ +      F  Y  YP       K+ AFR +I
Sbjct: 230 AIVAGQGAGLLPAAMVRGELASGRLVQLADVAWLDDFAYYLVYPPHHAERPKVAAFRRWI 289

Query: 291 FLKAR 295
              A+
Sbjct: 290 LDAAQ 294


>gi|54309299|ref|YP_130319.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913735|emb|CAG20517.1| hypothetical transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 313

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 133/283 (46%), Gaps = 21/283 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F   A  G+ T AA QL +S ++ S  +  LE ++G +LF R  R L +T +G +  
Sbjct: 6   LELFVRTADIGNITAAAVQLDISPAAASAALKRLEKQLGTELFIRSTRQLRITAEGERFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+  +  + E   + +G++R++ + DLG+NL+   L E +   P +  QL 
Sbjct: 66  LHCRQALSSLDDAKASITEMKGEIAGEVRLSVSSDLGRNLILPWLDEVMDNNPKLSFQLS 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D  MD  D A+R  +P + S++I  KL T+     A+P Y+     P   ++L 
Sbjct: 126 IGDSLADFYMDKVDVALRYGQP-EDSTMIAFKLATVDRVICASPAYIATYGSPQKPEDLL 184

Query: 188 KHNLITFG---------DLIPKCMEDFNWLATVDRPIGEP---RISCLQV-NSYLSIMQY 234
            HN + +          DL  K  +D   ++  D  I      ++S  ++ N    + ++
Sbjct: 185 HHNCLLYQLGNKTYNQWDLFSKNSDDT--ISNTDDSIKSKYKIKVSSNRMCNDGDIVRRW 242

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEAL 277
            V G GIAL     +  + N  R++E  + P    Y+  P +L
Sbjct: 243 AVAGKGIALKSRLDLSHDLNAGRVVE--LMPD---YYVKPTSL 280


>gi|226943648|ref|YP_002798721.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226718575|gb|ACO77746.1| transcriptional regulatory protein, LysR family [Azotobacter
           vinelandii DJ]
          Length = 318

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 113/251 (45%), Gaps = 10/251 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+ AA +  L+ S+++R+I GLE  +G  LF R    +  T  G   
Sbjct: 9   QLELFLDVLECGSFSAAARRRQLTPSAVARRIDGLEQTLGSPLFQRSTHEVRATPAGLAF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              +  +  +L   + E+      P G +R+      G+  L   + EFL  YP + +QL
Sbjct: 69  AERSRRILDELRLARAEVVSLDSAPEGLIRVDAPAPFGRRRLAPVIAEFLAAYPGVDVQL 128

Query: 127 ILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L +  ID   ++    D  +R+  P+  S L+   L  +   A A+P YL     P   
Sbjct: 129 RLIDSFIDQQGEHLGQVDLVLRI-GPLADSRLVATPLAPMRRIACASPDYLDRRGIPGDP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGI 241
            EL +H+ + +  L P       W   +D  I    P    +  N+  +++   + G GI
Sbjct: 188 CELPEHDGLDWDGLAPP----HAWRFAIDGQIRTIRPGRRRMTANNAETLLFGALAGLGI 243

Query: 242 ALLPDYIVKDN 252
           A LP +++ ++
Sbjct: 244 AHLPTWLISEH 254


>gi|293610460|ref|ZP_06692760.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826804|gb|EFF85169.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 300

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 145/300 (48%), Gaps = 20/300 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT++G +
Sbjct: 6   EELVAFIAIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLTQEGQQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++ ++L   + ELQ+S    +G +RI +      +++   + +F   YP+I+I+
Sbjct: 66  FLVKARKILNELNAAEEELQKSDQGTAGLIRIDSATPFVLHVIAPLMHKFRECYPNIEIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +++ ID+     D A R  + +  SSL  + +    +   A+P YL     P   ++
Sbjct: 126 LNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLFIVASPEYLAIKGTPTQPEQ 184

Query: 186 LDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L++H+LI F      +  P  + D  + A  +          ++ +S  ++ Q  + G G
Sbjct: 185 LEQHDLIGFTRPAYINSWPIKVGDEYFFAQAN----------IKASSGETVRQLTIRGHG 234

Query: 241 IALLPDY-IVKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ I KD     L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDIQEGRLIALFEDQIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|187927648|ref|YP_001898135.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187724538|gb|ACD25703.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 299

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 128/281 (45%), Gaps = 19/281 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR GSF  AA      ++++SR++S LE  + ++LF R +RGL LT++G  L+  T
Sbjct: 9   FNLVARHGSFGEAARATGRPKATLSRRVSELEGSLELRLFERGSRGLKLTQEGHALYERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  ++  T   +   S +P G+LRI+  +   Q  +   +  F L YP++ +++  ++
Sbjct: 69  GTLLTEIAETAAAIASGSERPRGRLRISAPMLFSQTAMGKLVATFALKYPEVLLEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  IR+  P    SLI R  +   +   A P   +   + L+   L    
Sbjct: 129 RGVDMIEEGYDLVIRV-NPDPDESLIGRVFMRDRLVVVAKPGLERPTGKALAPAVL---- 183

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPDY 247
                    +     N    +  P G+ RI+   V   +S + +     LG G A LP  
Sbjct: 184 ---------RGAGTGNAAWDITGPEGKSRIAIRPVAHLSSLIMVRDTVRLGVGAACLPVS 234

Query: 248 IVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286
           +V  +     ++   DV  P   ++  YP     + ++ AF
Sbjct: 235 LVAHDLEAGTLVHWGDVDGPDIALWALYPSRRLLSARVSAF 275


>gi|87123234|ref|ZP_01079085.1| transcriptional regulator, LysR family protein [Synechococcus sp.
           RS9917]
 gi|86168954|gb|EAQ70210.1| transcriptional regulator, LysR family protein [Synechococcus sp.
           RS9917]
          Length = 315

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 126/262 (48%), Gaps = 19/262 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +V + G  + A     + +S +SR+I+ LE  +G++L  R  R +TLT  G +++   
Sbjct: 13  FVLVVQHGGLSAAERATGIDKSRLSRRITRLEQALGVQLLRRTPRHVTLTTAGERVYAHC 72

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E     E    EL E + +PSG++R++  + + Q  L   L  FL  YP IQ+++   +
Sbjct: 73  REGLLCFERAIEELNELAAEPSGRVRLSCPVQITQTYLTRLLPAFLQAYPRIQVEVEASD 132

Query: 131 KDIDISMDYADCAIRLRKPIQSSS-LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+S D  D A+R+R  ++ S  L+ R L+ +     A+P  L   R  +     D  
Sbjct: 133 RIVDLSRDPIDLALRVRPELEDSRHLVARPLLPVRNWLVASP-VLMEARGAIE----DPE 187

Query: 190 NLITFGDLI-PKCMEDFN--WL----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            L  +  +  P  + +    W     A ++R   +PR   L VN+    ++    G GI 
Sbjct: 188 ALADWPSVAWPSAVSEAGPIWALRRHAQIERFSHQPR---LLVNNLDVQLRAVETGIGIG 244

Query: 243 LLPDYIVK---DNPNLVRIMED 261
           LLP+ IV    +   L R++ D
Sbjct: 245 LLPNVIVTNAIEAGRLARVLPD 266


>gi|77465137|ref|YP_354640.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126464593|ref|YP_001045706.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|77389555|gb|ABA80739.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
 gi|126106404|gb|ABN78934.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 298

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 133/287 (46%), Gaps = 7/287 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+LR F   A++GSFT AA+QL +S    S+ ++ LE  +G++L  R  R + LT  G  
Sbjct: 5   DELRAFVATAKTGSFTAAADQLGVSNRLTSKYVAELEKRLGVRLLQRTTRKVGLTPSGET 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  +L+   +E+   S   +G +R++  +  G++ + G L  F  L+P + + 
Sbjct: 65  LLARAPALLDELDDLLVEVSHGSRGFTGTIRVSAPVTFGEDYVGGMLGRFAALHPGLVVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L++   D++ +  D A R+ +  ++ SL  RKL  +     A+P Y+     P   ++
Sbjct: 125 LRLNDSFADLASEGIDVAFRVGRS-ETLSLKTRKLGEVRTVPAASPGYIATRGAPDRPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+ I   D   +    + +L        E R    QVNS  +     + G GI   P
Sbjct: 184 LVRHDCIL--DTNRRVPRRWTFLEDGTERSVEIR-GRFQVNSARAAADLAMAGLGICYAP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + + +   +  LV ++E        V   Y E      K++A  +F
Sbjct: 241 RFALAEALRSGRLVPVLEAFGGAVVPVSAVYLEGRSLPQKVRALIDF 287


>gi|163760650|ref|ZP_02167731.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
 gi|162282265|gb|EDQ32555.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
          Length = 280

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 128/290 (44%), Gaps = 27/290 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            R F   AR  SFT AAE++ ++QS++S+ +  LE  +G+ LF R ARGLTLT+ G    
Sbjct: 11  FRAFEAAARRLSFTAAAEEIGMTQSAVSQHVKSLEMSLGVPLFIRRARGLTLTDHG---R 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           R+  +V   LET           P+   L +A+++ + Q ++   L EF  ++P+I+I+ 
Sbjct: 68  RLLPQVGTALETLSAAASAFDPIPTQNVLTVASSVSVAQWIISPGLAEFTKIHPNIRIRF 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D     AD  I    P  S   + R  + +  +   A   LK+     ++Q L
Sbjct: 128 LSTIWPDDFHTVRADVEI----PFGSQKQVGRDAIMLEPNGLIA---LKSPSLEGTLQSL 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                     LI        W    D   G P+     V+SY + +   V G+G+AL+ +
Sbjct: 181 ---------PLIESVGTSDGWKTWGDVVGGSPKPHIF-VDSYGAALNLAVDGNGVALVSE 230

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + +       LVR  +D I P    YF        T   K FR++   +
Sbjct: 231 VLAQHAVRTRQLVR-ADDAIAPCKEGYFLRINESDPTA--KQFRDWFLAR 277


>gi|160897641|ref|YP_001563223.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363225|gb|ABX34838.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 311

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 129/301 (42%), Gaps = 35/301 (11%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ ++ VF  V + GS + AA  L +S S++S+Q+  LE + G+ L +R  R + LT+ G
Sbjct: 3   DYKRMAVFAAVVQHGSMSAAARALGMSPSAVSQQVRQLERDGGVTLLHRSTRQIALTDTG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++  + +       + EL  +  +P G+LR++ T+   +++    L  +L  +P ++
Sbjct: 63  ERYYQQCAAMAQAASQARAELAAARDEPGGELRLSATVGFARHIAPA-LGHWLARHPALR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L +D+  ID+     D A+R  + +  S    R+L  +        ++L  C  P  I
Sbjct: 122 LHLDVDDAPIDLIQSRIDLALRFGR-LADSGWAARRLGAMR-------NWL--CASPAWI 171

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-----------RISCLQV------N 226
           Q              P  +    WL       G+                LQV      N
Sbjct: 172 QAQGGSAAWRH----PAPLASMRWLGLAREGQGQALRAEARHPDTGETYSLQVLPHVASN 227

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           + LSI Q C  G G+ALL    V D      LVR++ D       ++   P+      K+
Sbjct: 228 NQLSIQQMCEAGLGLALLGSMDVADTVAEGRLVRLLPDWDFGGLDIWAVTPQRQAQPAKV 287

Query: 284 K 284
           +
Sbjct: 288 R 288


>gi|114570397|ref|YP_757077.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114340859|gb|ABI66139.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 310

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 13/305 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +R+F + A   + + A  QL L+ +  S +++ LE ++G  L +R  R ++L+ +
Sbjct: 1   MDTNGVRLFVLAADLLNISAAGRQLGLAPAVASARLAKLEHQIGADLLHRSTRKVSLSLE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      E+  + +     L    +  SG LR A +    Q  +   L EFL  +P +
Sbjct: 61  GMEFLPFAREILAQEDAANAALGNGRMDVSGTLRFAASSTFVQLHIAPILPEFLDRHPLL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+     D A+R    I+ SSL  RKL        A+P YL     P S
Sbjct: 121 HLDLKLSDTQMDLIEGGFDLALR-NYAIRDSSLRARKLADDQRILCASPDYLARHGTPTS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIG-EPRISCLQVNSYLSIMQYCVLGSG 240
             +L  H LI F +  P+ +       +    P+G +PRI C   +   S+      G+G
Sbjct: 180 AADLVDHQLIGFSNGPPRTLSTKAGEPSGSFPPVGSKPRIIC---DDGASMRLAARAGAG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI---FLK 293
           IA+   + +  +    +LVR++ D  I     ++  YP++   T K++ F +++     K
Sbjct: 237 IAMSSVWSLYQDIQEGSLVRVLPDYEIDDGSAIWLVYPKSNVLTAKVRVFIDYLAEKIGK 296

Query: 294 ARDWK 298
           + DW+
Sbjct: 297 SPDWE 301


>gi|327395030|dbj|BAK12452.1| glycine cleavage system transcriptional activator GcvA [Pantoea
           ananatis AJ13355]
          Length = 305

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F L YP I ++
Sbjct: 69  YYLDIKEIFSALNEATRKLQARSAK--GALTVSLLPSFAIQWLVPRLSSFNLAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++D +   D  D AI   R   P     L   KL   ++    +P  L     PL 
Sbjct: 127 IQAVDRDEEKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPA-LMTGENPLK 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
                  +L  F  L      D  W + + R +G   I+  Q    +    ++Q  + G 
Sbjct: 182 T----PMDLARFTLLHDASRRD--WQSYI-RQLGVQHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLICPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|86747948|ref|YP_484444.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570976|gb|ABD05533.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 304

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 121/264 (45%), Gaps = 9/264 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++R F  +A  GS +  A  L++ QS+++RQ+  LE  +G  L  R  R +TLTE+GS+
Sbjct: 9   ERIRTFVRIAERGSLSAVARDLNVGQSTVTRQLQELEAAIGAPLLSRTTRRVTLTEEGSR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   LE    E   +S   +G +RI+ T   G   +   +  F   YP+I + 
Sbjct: 69  YYARCVQILRLLEQAGDEALGASGAQAGTIRISCTASFGILHVCRLIFAFQDRYPEIGVD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  ID+  +  D A+RL  P+  SS+  R L        A+P YL     P S  +
Sbjct: 129 LGLTDHRIDLVREGVDLALRL-APLTESSMKLRTLGHSQRLLVASPDYLSAHGRPTSPHD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L  H  +   ++    M         T   P G      L+V+  L+  +  + G GIA 
Sbjct: 188 LSGHQGVRMMNVAGSDMLVLQGPGEETHRVPFG----GKLRVDHGLAAREAMIAGRGIAA 243

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF 267
              ++V D     R+  +VI P +
Sbjct: 244 THRWLVDDLLAAGRL--EVILPEY 265


>gi|329115402|ref|ZP_08244156.1| Putative transcriptional regulator [Acetobacter pomorum DM001]
 gi|326695381|gb|EGE47068.1| Putative transcriptional regulator [Acetobacter pomorum DM001]
          Length = 300

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 124/285 (43%), Gaps = 6/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L     VAR+ SFT AA +L +SQS++S  I  LE  + ++L  R  R +T T  G +
Sbjct: 7   NDLTALVAVARAKSFTKAAAKLGVSQSALSHTIRLLEERLDLRLLTRTTRSVTPTTAGQQ 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    ++E   I L E   + SG LRI    D    ++   +KEF+  YP I ++
Sbjct: 67  LISGIAPHLDQIENQLISLGELRNQESGNLRITMPDDALAYVVLPKIKEFVQKYPKINVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            + D K IDI  +  D AIRL + I            I      +P Y     +P   ++
Sbjct: 127 FVADLKLIDIFSEDFDGAIRLGENITKEMTSVPITPDIRFVVAGSPEYFSKNPKPKHPKD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN +T    +P     + W      + I       L  NS   I   C+ G G+A +
Sbjct: 187 LLNHNCLTL--RLPTHGRIYAWEFEKKGKDITVKVEGSLIFNSIFPIRDACLEGLGLAHM 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P+ + +       L++++ED        + C+P   +N   L  F
Sbjct: 245 PEMVARKYIQEGRLLQVLEDWCPYWSGYHLCFPRHHENVAPLSLF 289


>gi|224824501|ref|ZP_03697608.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602994|gb|EEG09170.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 305

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 122/261 (46%), Gaps = 13/261 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  VA   SF  AA  L  S S+++R I  LE EVG  L  R  + ++LT  G   
Sbjct: 8   EISVFCTVAEKRSFVAAARLLGRSPSAVTRAIQALEYEVGSTLLQRSQKLVSLTAAGESY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++       Q EL        G +R A   +L   +L G + EF   +PD++I +
Sbjct: 68  YTYARQMLDLQVEAQEELAGLGAAAQGWIRCAAPENLAIGVLPGVIAEFATQHPDVRIDV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D   +  D AIR   P Q S LI   L     H +A+P Y++    P+S  EL
Sbjct: 128 RFSDELLDPIREKLDFAIRGAFP-QDSELIGFPLWDYRRHLFASPDYIRRRGLPVSPDEL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H LI      P+ ++D+ +++     R   EPR    + NS +++      G GIA L
Sbjct: 187 VEHELIV--HTAPRILKDWYFVSEGRQFRSKVEPR---YRFNSGVAVYLAARHGVGIARL 241

Query: 245 PDYI----VKDNPNLVRIMED 261
             ++    VK+   LV++  D
Sbjct: 242 ASWLAAPAVKEG-ALVKVCPD 261


>gi|157377244|ref|YP_001475844.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319618|gb|ABV38716.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 300

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F  VA  GS T AA +L LS ++ S  +  LE ++G  LF R  R L LT+ G +
Sbjct: 4   NDLRLFVRVADCGSITAAATELELSPATASAALKRLEKQLGTSLFIRSTRSLRLTDTGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      L   Q  + +   K SG + +A   D+G+++L   L EF+  YP+++++
Sbjct: 64  YLIHCRRALSDLALGQQAVNDVREKISGVVSLAVPSDVGRHVLLPWLDEFMDQYPELKLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +   D   D  D A+RL  P + SSL+  ++  +     A+P Y+    E  +I +
Sbjct: 124 LHIGDTLSDFYHDKVDVALRLGTP-KDSSLVAFEIAKVKRLLCASPAYIAKYGEVTTIDQ 182

Query: 186 LDKHNLITF 194
           L  HN + F
Sbjct: 183 LSDHNCLFF 191


>gi|83645276|ref|YP_433711.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83633319|gb|ABC29286.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 320

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 134/297 (45%), Gaps = 15/297 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  VA + S T A++ L +S+ +ISR+I  LE  +G+ L  R  R   LT  
Sbjct: 1   MDLNSMCIFTKVAETKSITSASQMLGISKQTISRKIIQLEESLGVCLIRRTTRNFELTTA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLYPD 121
           G    +  + +  + E     ++     P G+++++  +    N     L   FL   P 
Sbjct: 61  GQAYFQYCTCIVQQAEEANAMVKSLQSTPVGEIKVSMPLAFNNNNAMSKLFTNFLKKTPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I + L N+   +  +  D A RL  P+  S++I R L  +     A+P Y++    P 
Sbjct: 121 VKIDIHLSNRRTCLISEGIDMAFRL-GPLVDSTMIARGLGVLTFTYVASPEYVEMNGLPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  ++  H +I   D   K ++DF     ++  IG+     +Q+N +    Q  + G GI
Sbjct: 180 TPNDVINHTIIAMHDC--KLLDDFR----INEKIGDR----VQINDFSLAKQMAMDGFGI 229

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+LP ++  D      L  I ++   P+  +   Y ++      ++ F N +  + R
Sbjct: 230 AVLPVFMCVDEIREGILTPIQKECFQPTRHLNLVYTQSRHQPAHVRKFINHVVEETR 286


>gi|217972722|ref|YP_002357473.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217497857|gb|ACK46050.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 312

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 120/268 (44%), Gaps = 16/268 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +   L+ F  V  S S++  A +  +S S ISR IS LE  +G +LFYR+ R +  TE
Sbjct: 6   SINMRALKFFIGVYDSKSYSVVARKEGVSPSMISRVISQLEDSLGQQLFYRNTRAIIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +L   + EL + +++P G +RI   +  GQ  +   L  FL  YP 
Sbjct: 66  SGRIFIEYARSMADQLNEVRNELLDRTIEPKGLIRINAPVFFGQRHIAPWLAGFLRRYPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L   +  ID  +  AD   R+   +  SSL  R L +   H  A+  Y+     P 
Sbjct: 126 VQVELTQTDDYIDPHVSAADIIFRIGTLVD-SSLHSRILGSQTYHLAASKAYIALHGMPT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-----WLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              +L+ H  + +     +    FN     WL        +P    L  N+  +++   +
Sbjct: 185 EPADLNNHQCLVYSGSSGQNRWFFNKNKTTWLH-------QPITPILTSNNAETLLIAAL 237

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMED 261
              GI L PD+++ D   N  L+ ++ D
Sbjct: 238 NDMGIVLFPDWLIGDSLKNGQLISLLTD 265


>gi|148976676|ref|ZP_01813363.1| transcriptional regulator [Vibrionales bacterium SWAT-3]
 gi|145964027|gb|EDK29285.1| transcriptional regulator [Vibrionales bacterium SWAT-3]
          Length = 301

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 134/292 (45%), Gaps = 20/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V AR  S++ AAE+L +SQ+++S++I  LE +VG KLF R  R +TLT +G  L+
Sbjct: 11  LRYFEVAARLSSYSKAAEELFVSQAAVSQKIRQLEEQVGCKLFIRKGRAMTLTHEGHILY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++ + K+     ++Q   ++  G L + +        L   L +F + +P+I I+++
Sbjct: 71  GHVTDGFQKVLLGLNKIQSEPIQ--GLLVVRSPPSFASRWLLPRLWKFSVKHPEIPIKVL 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM------HAYAAPHYLKNCREPL 181
             +   ++     D AI     +Q   L   + + + M      + + +P  L N  +  
Sbjct: 129 TGSDTPNLKHGEIDVAI-----LQGEDLCVEQGLALEMLINEPVYPFCSPE-LANSLKFT 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L K  LI F      C     W    D P+    +  ++V ++   +   + G G+
Sbjct: 183 SPEQLLKCWLIHFNS---GCFPWEEWFRQADIPMQYSTVQWMEVGTFDMGLTTVMAGHGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  D +  D      LV+     +TP   V  C+  +     +++AF  ++
Sbjct: 240 CLATDSLAGDFIERGLLVKPFNIGMTPGVQVNLCFDPSSPRKERIEAFTEWL 291


>gi|116691639|ref|YP_837172.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116649639|gb|ABK10279.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 309

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 95/184 (51%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  SGSF  AA +L +++S++++ ++ LE  +G +L  R  R L LT++G   +   
Sbjct: 11  FVDVVESGSFAAAALRLGMTRSAVAKIVARLELRLGARLLQRTTRQLGLTDEGLVYYEQC 70

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  T+  L     +P+G++R++  +  G+  +   ++  +  +P ++I +   +
Sbjct: 71  RRLLAELGETEAALDAGRREPAGRVRVSVPVLFGRQCVAPVVRRLVERHPRLEIDMSFSD 130

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D+  D  D A+R+ +   +S+L+ RKL    M   A+P YL     P  + EL  H 
Sbjct: 131 RVADLVNDGFDLAVRIGELADTSALVGRKLGVQRMGICASPAYLARHGRPSGLDELASHV 190

Query: 191 LITF 194
            I +
Sbjct: 191 GIAY 194


>gi|197286147|ref|YP_002152019.1| DNA-binding transcriptional activator GcvA [Proteus mirabilis
           HI4320]
 gi|227357267|ref|ZP_03841624.1| glycine cleavage system transcriptional activator (LysR-family
           transcriptional regulator) [Proteus mirabilis ATCC
           29906]
 gi|194683634|emb|CAR44550.1| glycine cleavage system transcriptional activator (LysR-family
           transcriptional regulator) [Proteus mirabilis HI4320]
 gi|227162530|gb|EEI47519.1| glycine cleavage system transcriptional activator (LysR-family
           transcriptional regulator) [Proteus mirabilis ATCC
           29906]
          Length = 306

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 16/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDSAARHLSFTKAAEELFVTQAAVSHQIKTLEEFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +L   S K  G L ++ +       L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSSINEATRKLLARSAK--GALTVSLSPSFAIQWLVPRLSGFNQAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    + L   +L   ++    AP  L   +   +  +
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTDRLYAEYLIPVCAPSLLTGEKPLKTPSD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLS-IMQYCVLGSGIA 242
           L  H L+             +W A V +   + +I+  Q  + S+ S ++Q  V G G+A
Sbjct: 186 LIYHTLL-------HDTSRRDWQAYVRQLEIQNQINVQQGPIFSHSSMVIQAAVHGQGVA 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+ + + +   ++  LVR  +DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 239 LVNNVMARSEIESGRLVRPFQDVLVSKNAFYLVCQDSQAELGKIAAFRQWILSQA 293


>gi|190893904|ref|YP_001980446.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190699183|gb|ACE93268.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 302

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 20/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR+GS T AA +L L+QS++SRQ+S LE ++G++LF R  + + LT  G    
Sbjct: 16  LAAFEAVARTGSVTAAARELDLTQSAVSRQVSALEEQLGVELFLRERQTMRLTLAGDGYA 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E   ++ +  + L+ +     G L +A     G   L   L  FL   P + I L 
Sbjct: 76  REIREALRRISSASLNLRAN--PHGGTLNLAILPTFGTRWLAPRLGRFLAANPGVTINLA 133

Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                 D  +D  D AI    P     + + L+  + V      +   H +   ++ LS+
Sbjct: 134 TRLSPFDFRLDSIDAAIHFGHPHWPGAELTLLMSERTVPACSPDFLERHTITGPQDLLSV 193

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L   +L T     P   E   W A     +    +  +  + + +  Q  + G G+AL
Sbjct: 194 PLL---HLTT----RPDAWE--QWFA--GNGVSFESVHGMLFDQFATAAQAAIAGLGVAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP +++++     +LV  ++  +      Y  +P    +   L AFR++I
Sbjct: 243 LPTFLMQEELRRGDLVAAVDREMESRERYYLAFPRERADYAPLAAFRDWI 292


>gi|170736666|ref|YP_001777926.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818854|gb|ACA93436.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 328

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 19/300 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ F  +A +G+FT   ++L ++ + +SR ++ LE  +GI+L  R  R + LTE G + 
Sbjct: 6   SMQAFVTLADAGTFTETGKRLGITTAHVSRLVASLEHRLGIRLLNRTTRSMCLTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++ ++ E +++ V P G+LR   +  +  + +   + +F   YPD+ + L
Sbjct: 66  LARARDITLAVDASEREARDARVHPHGRLRAHCSASIANHFVIPLIGQFQARYPDVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      +  D  D A+     + SS  +   +  I     A+P YL     P S   L
Sbjct: 126 TLAPHLPKLVRDSYDVAVIAMPSLPSSEQVAIDVGRIRSVLCASPAYLDAHGMPDSPGAL 185

Query: 187 DKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             H  +    L+     +  W         TVD    +P ++   V + L+I      G+
Sbjct: 186 VHHRCV---QLVAPAYHERIWTLWNGAEAQTVDV---DPSMTA-DVAASLAIA--VREGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI LLPD++   +     LVR++ D       V+  Y        K +A+ +F+    RD
Sbjct: 237 GIGLLPDFVAAADLRSGALVRVLPDYQAEEIGVFLVYASRQHLDAKTRAWVDFMKAALRD 296


>gi|91782799|ref|YP_558005.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686753|gb|ABE29953.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 336

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 7/201 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F+ AA QL  + S++SRQI  LE  +  +L  R  R + +TE G+++ 
Sbjct: 40  MAVFARVVDAGNFSVAARQLGSTPSTVSRQIKRLEDALATRLLERSTRTVRVTESGAQVA 99

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++            + + KP GK+ ++      ++++   +  FL  Y ++ +QL+
Sbjct: 100 RFCRDMVSAASGAVDAAGQLAGKPQGKVSVSAPTQFAKSVIHPLIPGFLRAYGEVDLQLL 159

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++D+D   D  D  IRL + P Q   L  R+L  +     A+P YL+    P   ++L
Sbjct: 160 FTDRDVDPLADGIDLVIRLTEHPPQ--GLAGRRLGAVRWLLVASPAYLRERGTPAQPRDL 217

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            KH  I  G+      +D  W
Sbjct: 218 LKHACIYLGE----TADDNRW 234


>gi|197121986|ref|YP_002133937.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171835|gb|ACG72808.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 312

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 14/282 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +  +GS + AA QL  SQ +ISR++  LE  +G++L  R    +  TE G +     
Sbjct: 14  FVRIVDAGSLSAAALQLGTSQPTISRRLHALEAALGVRLLQRSTHAIHPTEAGQRYVARA 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E+       + EL+    +P+G LR+      GQ  L G + E+L  YP + ++  L +
Sbjct: 74  RELLGAWRGLEAELRGDGDEPAGHLRVVAPHAFGQQQLLGPVVEYLRRYPALSVEWRLHD 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP---LSIQELD 187
             +    D  DC + +  P +  +++ RK+  +     AAP  +   R P    ++  L 
Sbjct: 134 GPVRFVEDGVDCCVSVDAP-EGEAVVVRKIHEVQRIVVAAPSLVPG-RAPSRPAALAALP 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L+ +     +        AT+      PR      +S  ++ Q    G G AL  D+
Sbjct: 192 WLALVPYYRNTVRLEGARGATATIRI---RPRFVT---DSLFALRQAASSGLGAALASDW 245

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IV ++     LV ++     P+  VY  YP+A     +L+AF
Sbjct: 246 IVAEDVAAGRLVHLLPAWRGPTLPVYVAYPQARFYPARLRAF 287


>gi|170721495|ref|YP_001749183.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759498|gb|ACA72814.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 301

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 124/293 (42%), Gaps = 20/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  +F+ AAE+L +  S+ISR +  LET++GI LF R  R L LTE G    
Sbjct: 7   LNAFVEAARQSNFSRAAERLEVKASTISRYVRDLETDLGIALFNRSTRALRLTEGGRTFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +LE  +      + +P G L++       ++ +   L EF   +P IQ+ L 
Sbjct: 67  VHAQRVLDELEVARAAASSLNDEPRGVLQLNAPPAFARHHIVPALSEFRARFPQIQVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +   +++    AD AIRL   +  SSL  RK+        AAP        P   + L 
Sbjct: 127 CEESQVNLIDAGADLAIRL-GCLPDSSLKARKIADEQWVLCAAPSLWHEPSGPEHPEALA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               I     +     D  W +     + +     L+ N   + +     G G  LLP +
Sbjct: 186 DQGFIASSQRL-----DLYW-SHAGETVRQSHTVTLRTNDLEAQLVAAQAGQGPVLLPAW 239

Query: 248 IVKD---NPNLVRIME-------DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V        LVR +        +V T   +++F YP     + K+++F +F+
Sbjct: 240 LVATAIRQGTLVRWLSAWQCQPGEVGT---SLWFIYPPKRIVSSKVRSFIDFM 289


>gi|268592175|ref|ZP_06126396.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291312576|gb|EFE53029.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 304

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 130/286 (45%), Gaps = 10/286 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  VAR  SF+ AA QL +S + +S++I  LE  +G  LF+R AR + LT +G  
Sbjct: 8   EDIRVFVTVARLMSFSQAASQLLVSPAYVSKRIKLLEENLGQTLFFRTARSIKLTHEGQI 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + R +  +  +LE  Q +L     +  G LRI+ +   G   +   +      +P + I 
Sbjct: 68  ILRSSEVMLAELEQMQQQLNACREEIRGNLRISCSTGFGSTYINPFILTLRGSHPLLGID 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +K +DI  +  D  I +   I +   I R++        A+P YL     P   QE
Sbjct: 128 LTLTDKSVDIISENIDVDICIGGTI-AEQFIARRIARNQRILCASPTYLATHGYPKYPQE 186

Query: 186 LD-KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L+ KH  I   +   +      W L      +     S L VN+     Q+C+ G GI L
Sbjct: 187 LEQKHFCIAIKE---RNQAPAVWKLEYQQESMTVTPNSKLTVNNGEVAKQWCLSGEGILL 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              + V+    +  LVR++      +  VY  Y  +L+ +  L+ F
Sbjct: 244 RSQWSVQPELQSGQLVRVLPQ-WHQTADVYAVYSRSLRTSANLRVF 288


>gi|89053378|ref|YP_508829.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88862927|gb|ABD53804.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 306

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 129/291 (44%), Gaps = 13/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +  F   AR  SF+ AA+ LH+S  ++S+ I  LE ++  +LF R  R + LT +G
Sbjct: 3   DLRLIETFIQAARRESFSSAAKALHVSPGAVSQNIKSLEEQLQTRLFTRTTRQIKLTPEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +  +     L+T    +Q+      G+LRI +T   G+  +   +  F   +P+++
Sbjct: 63  QRFLQRCAPAVEALQTAASAIQDEREAFQGRLRITSTTAFGRAEILPLIASFQETHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L +  +D+  +  D AIR    +  S  I R L+ +     AAP YLK    P + 
Sbjct: 123 IELSLSDGFVDLVAEEYDLAIR-GGILPDSDYIARLLIPVTPLVCAAPGYLKKFGIPKNE 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYL----SIMQYCVLG 238
            +L  H LI  G         F W  +  D P  +PR   +   S +    S ++   LG
Sbjct: 182 ADLASHRLI--GMRSNPSQRVFAWEFSDPDSP--QPRRVEVTPTSVMNDPESTVRAASLG 237

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+A +   +V     +  L  +  +    S  +Y  YP       KL AF
Sbjct: 238 MGLAQVGSNVVLPLVASGELRIVFPEAAVQSRGLYAVYPSKRFAPKKLTAF 288


>gi|325914823|ref|ZP_08177158.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325538914|gb|EGD10575.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 321

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F     +GS    A+ L +S +++S+ I+ LE  +G +L +R  R L LTE+G+   
Sbjct: 7   IRSFVSTVDAGSIAGGAKVLGVSAAAVSQNIARLEQHLGARLLHRTTRSLALTERGALYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   LE  +  +      P+G+LR+A+T    +++L   L      YP ++I+L+
Sbjct: 67  EQVRQLERDLERARQLVAGPQQAPAGRLRVASTAAFARHVLAPMLPALRQRYPQLEIELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +  + +  D ++R+   +    L+ R +  +     AAP YL  C  P    EL 
Sbjct: 127 CTDRVVQHAQENIDVSLRIEAQL-DDGLVARCIAQVPFVVCAAPEYLARCGTPTHPDELK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALLPD 246
            H+ +     +      +N++    R   +P++    V+  + ++    V G GI  L  
Sbjct: 186 YHDCLLLRYPVDGRFLRWNFVRNGVR--FQPQLGQAMVSDDVDALATMAVAGGGITRLAA 243

Query: 247 YIVKDN-----------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++V+             P+    M+  I P   ++ C  +    T K++AF
Sbjct: 244 FVVQPYLQHGKLQALFLPDGSDTMQPAIEP-LRLFLCVADRRDFTPKVRAF 293


>gi|218508759|ref|ZP_03506637.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 306

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 101/196 (51%), Gaps = 1/196 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              +D++R F  VA  G+ +  A++L + QS+++R ++ LE  VG+ L  R  R +TLTE
Sbjct: 5   GLGFDRMRTFVRVAERGNLSMVAKELGIGQSTVTRHLNELEEAVGVALLSRTTRRVTLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS+ +    ++   +E    E + +   P+G +R++ T  LG   +   + +F  L+PD
Sbjct: 65  EGSRYYTNCLQILRLVEQAAEEARAARQAPAGAVRLSCTAALGVMHVTRMIFDFQDLHPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L L ++ ID+  +  D A+RL  P+  SS+    L         AP YL     P 
Sbjct: 125 IRVDLNLTDERIDLVREGVDVALRL-GPLADSSMKLHALGESQRLLVGAPAYLSARGRPE 183

Query: 182 SIQELDKHNLITFGDL 197
              +L ++  I   ++
Sbjct: 184 RPADLSRYETIVMSNV 199


>gi|187477638|ref|YP_785662.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115422224|emb|CAJ48748.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 307

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 122/271 (45%), Gaps = 9/271 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            DWD LR F  VARS   + AA  L +  ++++R+I  LE E+G  LF +  + G  LTE
Sbjct: 2   LDWDSLRYFLEVARSQRVSAAARTLGVEHTTVARRIRALEAELGSLLFEKSRSAGFVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   +   +  L      PSG +RI  T   G  ++     +F   YP 
Sbjct: 62  DGQRLFVHAEQLESTVHAARENLSGIGQAPSGHIRIGATEGFGSYVVTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    I  +L    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYICSRLCDYTLMLYGTPQYLARHPPIR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H+ I + D +    E   +L  +   +   R+  L+  S ++     + G  +
Sbjct: 181 TRADLSGHSFIGYVDEL-LFSERLRYLEDL---LPNSRV-VLRSTSVVAQYHAALQGQSL 235

Query: 242 ALLPDYIVKDNPNLVRIM--EDVITPSFTVY 270
           A+LP +I   +  L  ++  +  IT SF +Y
Sbjct: 236 AILPCFIAAQDSRLKPVLGGDVAITRSFWMY 266


>gi|270265343|ref|ZP_06193604.1| LysR-family transcriptional regulator [Serratia odorifera 4Rx13]
 gi|270040747|gb|EFA13850.1| LysR-family transcriptional regulator [Serratia odorifera 4Rx13]
          Length = 298

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 144/299 (48%), Gaps = 21/299 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +L +F  V  +GSFT AA  L  +++ +S  +  LE+E+G+ L  R  R L LT+ 
Sbjct: 2   LNLQRLAIFVAVVDAGSFTAAAVTLGQTKAVVSFNVKQLESELGVSLLVRSTRRLALTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++    +    E    +++      SG LRI TT + G  ++   L  F  L+P +
Sbjct: 62  GERFYQRCLRLLQDAENVLDDVRRDHHGLSGVLRITTTPEYGAQVVVPALAAFSRLHPRL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSS---SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +IQ +  +   D+  +  D AIRL +   SS   +LI     +  +   AAP YL   R 
Sbjct: 122 RIQHVSSSYHADLISERFDVAIRLGQLADSSHRAALID----SFAILPVAAPDYL--ARH 175

Query: 180 PL-SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI---SCLQVNSYLSIMQY 234
           P+ S+ +L +   I    L        +W + T  R     ++   + L  +S  +++ +
Sbjct: 176 PVGSLTQLAQAQWIAHSRL----SSPLSWQVITPQRQAVLFKVEDAATLMGDSAAALLAF 231

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G+G+ALLP+++V+       L  ++ D   P+ ++Y  YP       K++AF +F+
Sbjct: 232 ALHGAGVALLPEWLVRPAIAEGKLCALLADHQFPAQSIYALYPNTRHVPEKVRAFIDFL 290


>gi|205352645|ref|YP_002226446.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272426|emb|CAR37309.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627712|gb|EGE34055.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 301

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPELELV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|161526048|ref|YP_001581060.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189349237|ref|YP_001944865.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia multivorans ATCC 17616]
 gi|160343477|gb|ABX16563.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189333259|dbj|BAG42329.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia multivorans ATCC 17616]
          Length = 305

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 125/302 (41%), Gaps = 29/302 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G  
Sbjct: 10  NALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGRD 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + ++      +  S    SG L I+ T       L   L  F    PD+ +Q
Sbjct: 70  YLPPVRNAFRQIADASQRV--SGAADSGVLTISVTPFFASAWLVPRLARFRDACPDVDLQ 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  +   D + D  D AIR     + + L    L+T+ + A A+P  +     P +  +
Sbjct: 128 IVTSHALADFARDGVDVAIR-HGLGRYAGLCSEHLLTVEIVALASPELVARLGMPRTPAD 186

Query: 186 L---------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           L         ++    T+ D   + ++DF          G PR         L  +Q  V
Sbjct: 187 LVDWPHLHDAERKGWHTWFDA--QRIDDF----------GPPRGPAFDDAGLL--LQAIV 232

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G  LLP  +V+    N  LV++ +      F  Y  YP       K+ AFR ++   
Sbjct: 233 AGQGAGLLPAAMVRGELANGRLVQLADVARLDDFAYYLVYPPHHAERPKVAAFRRWVLDA 292

Query: 294 AR 295
           AR
Sbjct: 293 AR 294


>gi|107027308|ref|YP_624819.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691295|ref|YP_836828.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896682|gb|ABF79846.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649295|gb|ABK09935.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 328

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 19/300 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ F  +A +G+FT   ++L ++ + +SR ++ LE  +GI+L  R  R + LTE G + 
Sbjct: 6   SMQAFVTLADAGTFTETGKRLGITTAHVSRLVASLEHRLGIRLLNRTTRSMCLTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++ ++ E +++ V P G+LR   +  +  + +   + +F   YPD+ + L
Sbjct: 66  LARARDITLAVDASEREARDARVHPHGRLRAHCSASIANHFVIPLIGQFQARYPDVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      +  D  D A+     + SS  +   +  I     A+P YL     P S   L
Sbjct: 126 TLAPHLPKLVRDSYDVAVIAMPSLPSSEQVAIDVGRIRSVLCASPAYLDAHGMPDSPGAL 185

Query: 187 DKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             H  +    L+     +  W         TVD    +P ++   V + L+I      G+
Sbjct: 186 VHHRCV---QLVAPAYHERIWTLWNGAEAQTVDV---DPSMTA-DVAASLAIA--VREGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI LLPD++   +     LVR++ D       V+  Y        K +A+ +F+    RD
Sbjct: 237 GIGLLPDFVAAADLRSGALVRVLPDYQAEEIGVFLVYASRQHLDAKTRAWVDFMKAALRD 296


>gi|323139163|ref|ZP_08074219.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC
           49242]
 gi|322395546|gb|EFX98091.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC
           49242]
          Length = 310

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 132/308 (42%), Gaps = 24/308 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  AA  L + +S +SR++  LE  +G++L  R  R   +TE G
Sbjct: 3   DLNDLYFFVRVVDNGGFAPAARVLGVPKSRLSRRLVLLEQRLGVRLLQRSTRSFAVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R   E+    +  Q  +     +P G++R+     L    +   +  F+  YP +Q
Sbjct: 63  REYYRHCKEMLEAADAAQEAIDRFHAEPQGRVRVTCPPGLVHFRIGDLVSRFMDRYPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   ++ ID+  D  D +IR+   P++   L++R L        A+P +L     P +
Sbjct: 123 VYLKSTSRPIDVITDSIDVSIRVSTPPLEEGDLVRRILAQSPQRIVASPAFLSRFAPPQT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYC 235
             EL     I  G   P+ +  + W   ++ P  E       PR   L  + ++ +    
Sbjct: 183 PAELSALPTIDIGP--PRSL--YQW--RLEGPDEETLLVSHQPR---LVTDDFVQMRLAA 233

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291
           + G G A LP + V D+     LV IM      +  VY  +P      G   A R  I F
Sbjct: 234 LHGIGAAHLPAFAVDDDLATGALVEIMPQWRPRTGIVYVVFP---SRRGVQPAVRGMIDF 290

Query: 292 LKARDWKF 299
           L A   +F
Sbjct: 291 LAAEFARF 298


>gi|260599151|ref|YP_003211722.1| DNA-binding transcriptional activator GcvA [Cronobacter turicensis
           z3032]
 gi|260218328|emb|CBA33331.1| Glycine cleavage system transcriptional activator [Cronobacter
           turicensis z3032]
          Length = 305

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 132/298 (44%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   E++ +L     +LQ  S K  G L ++       + L   L  F   +P I ++
Sbjct: 69  YFQDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSSWPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGDKPLKA 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L +H L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLARHTL-----LHDASRRDWQ---TYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|257141497|ref|ZP_05589759.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 294

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 135/303 (44%), Gaps = 34/303 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-- 63
           + LR F V AR  +F  AA ++ ++Q ++++Q+  LE  +G++LF R  RGL LT  G  
Sbjct: 9   NALRAFEVSARHLNFRAAAGEIGVTQGAVAQQVRHLEDTLGVRLFERLPRGLALTADGLA 68

Query: 64  --SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             + + R  + +     T ++  + SSV       I+TT       L   L  F   +PD
Sbjct: 69  YFADVRRALNLIGDA--TDRLAKRRSSVT------ISTTPSFASRWLIPRLASFGDEHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL----KNC 177
           + I++I D++      D  D AIR  KP     L+ R L  + +HA  +P  L       
Sbjct: 121 VDIRVIADSQFATFQGDGVDLAIRYGKPPFGKGLVARLLFPVDIHAVCSPALLAPSGARA 180

Query: 178 REPLSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           R+ L+ Q L  D H      DL P+ +      A VD P   PR +     S L+I    
Sbjct: 181 RD-LAGQVLLHDAH------DLWPEFLAALPERAAVD-PAKGPRFN----QSSLAI-DAA 227

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G G+AL  D +V    +   L R+ +  +  S   Y  YP   +    +     ++  
Sbjct: 228 IAGHGVALASDQLVARDIEAGRLRRLFDFALPLSIGYYIVYPNEPRRPDDIAKTEAWLIR 287

Query: 293 KAR 295
           +AR
Sbjct: 288 EAR 290


>gi|258541519|ref|YP_003186952.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632597|dbj|BAH98572.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635654|dbj|BAI01623.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638709|dbj|BAI04671.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641763|dbj|BAI07718.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644818|dbj|BAI10766.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647873|dbj|BAI13814.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650926|dbj|BAI16860.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653917|dbj|BAI19844.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 307

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 16/294 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  R+F  V  + SFTHAAE L + +SS+S  +  LE+ VG +L  R  R +T T  G+ 
Sbjct: 5   DLFRIFARVVEAASFTHAAETLGMPRSSVSAAVQQLESRVGARLLTRTTRTVTPTPDGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   +E  +   +++     G LR+     +G+ ++   L +FL  YP + ++
Sbjct: 65  FYEHCLRLVADVEEAENLFRQNESAVQGVLRVNMPGRIGRLIVAPALPDFLATYPGLSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +++  D  DC +R+  P+Q S LI R++  + +   A+P YLK    P    +
Sbjct: 125 LGVTDRAVNLVEDGLDCVLRV-GPLQDSGLIARRMGELELINVASPTYLKQHGTPQCPTD 183

Query: 186 LDK-HNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L K H  + +       +E + W        +D P        + VNS  +++   + G 
Sbjct: 184 LLKGHEAVRYASPQNGRVEQWEWEEHGHTHMLDVP------GRVTVNSAEALIACTLAGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  +P Y V+       LV I+         +   YP     + +++ F  ++
Sbjct: 238 GVIQIPAYDVRSYLHTGQLVEILPQWRAAPLPMALLYPHRRHLSMRVQVFATWL 291


>gi|238921339|ref|YP_002934854.1| DNA-binding transcriptional regulator [Edwardsiella ictaluri
           93-146]
 gi|238870908|gb|ACR70619.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 320

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 14/250 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   GSFT AA QL +S SSIS+ I+ LE  + I+L  R  R ++LTE G   
Sbjct: 20  RMAIFARVVECGSFTGAAAQLAMSVSSISQTITKLEQSLQIRLLNRSTRRISLTEAGRIY 79

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   ++  + +    +L   +  PSG LRI  +  + QN+L       L  YP + + L
Sbjct: 80  YQGCRKMLQEAQEVHEQLYAYNNTPSGTLRIGCSATMAQNVLAPISARMLAEYPGLSVNL 139

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +      D+  D  D  +R    +Q S L  R L  + M   AA  YL+    P +  EL
Sbjct: 140 VTGVPAPDLIADGLDLVVRAGD-LQDSRLFCRSLGAMPMVICAAKCYLQRHGTPENPAEL 198

Query: 187 DKHNLITF-GDLIPKCMEDFNWLATVDRPIGEP-RI---SCLQVNSYLSIMQYCVLGSGI 241
             ++ + F G   P+         T+  P GE  R+        N   +++ +   G+GI
Sbjct: 199 GSYSWLNFSGQPAPEL--------TLTAPEGESLRLMPSGRFHTNDAQTLLSWLNAGAGI 250

Query: 242 ALLPDYIVKD 251
             LP   V D
Sbjct: 251 TYLPLMWVID 260


>gi|239816224|ref|YP_002945134.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802801|gb|ACS19868.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 314

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 130/294 (44%), Gaps = 23/294 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  S  +AA++L ++  ++S+ I  LE  +GI LF R  RG+ LT+ G  
Sbjct: 9   NALRAFEATARHLSVKNAADELCVTAGAVSQLIKSLELHLGIALFRRANRGIFLTDAGQA 68

Query: 66  LHRVTSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   + ++   T +I +       +G L ++TT       L   LK F   +PDI 
Sbjct: 69  YLPPVRNAFRQISDATRRIAMPAE----TGILTVSTTPFFASAWLVPRLKSFHDAHPDID 124

Query: 124 IQLILDNKDIDISMDYADCAIR---LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +Q++      D S D  D AIR    R P     LI ++++T+ +   A P  ++    P
Sbjct: 125 LQVVSSTALADFSRDGVDVAIRHGLGRYP----GLISQRVLTVEIVPVATPALVRQLGMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGS 239
            S  +L +   +   +     M  F      D RP   P       +S L +++  + G 
Sbjct: 181 ASPADLTRWPRVNDAERKGWAMW-FEAQGIEDARPARGPSFD----DSGL-LLKAVLAGQ 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G  LLP  +V D      LV++ E      F  Y  +PE  ++  K+ AFR +I
Sbjct: 235 GAGLLPAALVADEVAEGRLVQLSEAAWLEDFAYYLVHPEDSRHRPKVAAFREWI 288


>gi|146308233|ref|YP_001188698.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576434|gb|ABP85966.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 294

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 139/289 (48%), Gaps = 19/289 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +W+  RVF  V RSGS + A+  L ++QS+  R++  LE  +G+ LF R + GLT T 
Sbjct: 3   GIEWESQRVFLAVLRSGSLSGASRLLGIAQSTARRRLESLEGSLGLSLFTRTSTGLTPTA 62

Query: 62  QGSKL-HRVTS-----EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
              +L H V S     + ++++ +++ E+        G +RI ++  LG  ++   L++F
Sbjct: 63  SARRLIHHVESMDIAAQAFNRMASSETEVSR------GTIRITSSDLLGVEVMPRLLRDF 116

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              +PD+ +QL ++++  D++   +D A+RL +P ++  ++ R+   + +  YA+   L 
Sbjct: 117 HHDHPDLNLQLSINDQMEDLARQESDIAVRLVRPSEAGVVV-RRTGALRVGLYASAECLA 175

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P S+  L +  LI       +   D   L  +     + R + +  +++L+ +   
Sbjct: 176 RYELPASLAVLRQAPLIG----PDRRTADLRRLVELGFCEADQRFA-IATDNHLAQLAAI 230

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
             G G  L P   + +N  L+R++ +       V+      L+   ++ 
Sbjct: 231 RAGLGFGLCP-VTIAENYQLIRVLPESFGFEIDVWIAMHSDLRRISRIS 278


>gi|119898658|ref|YP_933871.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119671071|emb|CAL94984.1| transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 298

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 119/266 (44%), Gaps = 24/266 (9%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V RSGS + AA +L  +Q +I R +  LE  +G  LF R   GLT     S
Sbjct: 8   WELYRSFLAVMRSGSLSAAARELSTTQPTIGRHVEALEQALGTTLFVRTPSGLTPNAIAS 67

Query: 65  KLHRVTSEVYHKLETTQ-----IELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLL 118
            L      V H           + L         G +R+A +  +G  LL   L  F   
Sbjct: 68  GL------VPHAENMEMAAAALVRLASGGADDVGGAVRLAASHIVGTELLPDILTGFHQA 121

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P I I+L+L +   D+    AD A+R+ +P+Q  +L+ R++ T  +  +A   Y++   
Sbjct: 122 HPRIAIELVLSSAASDLLRGEADIAVRMFRPVQ-DALVARRVGTGRIGLFAHRRYIERHG 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYC 235
            P S+ EL++H +I F         D  W    A ++  I     S L+ +S ++ +   
Sbjct: 181 LPASLAELERHTVIGFD-------RDMAWTRATAALNVEITREMFS-LRCDSEVAQLAAL 232

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMED 261
             G GI     ++ + +  LV ++ +
Sbjct: 233 RAGFGIGACHVHVARRDAALVPVLTE 258


>gi|206560896|ref|YP_002231661.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198036938|emb|CAR52847.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 297

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 141/294 (47%), Gaps = 13/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  +R+F +VAR  S   AA +L ++  ++S++++ LE  +G++L +R  R LTLT +G
Sbjct: 3   EFSDIRLFTLVARHRSLAAAARELGVTPPAVSKRLAHLEKRLGVRLTHRTTRRLTLTPEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     S +  +L+  +  L     +P+G LR+  +   G+  +   +  F+  YP I+
Sbjct: 63  ERYLAEGSRLLGELQELEQVLIRGHAEPAGLLRVNASYGFGRVRVAPAISAFVARYPAIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL L ++ +++     D  IR   P  S+ +  R L   H    A+P Y+     P   
Sbjct: 123 VQLQLTDQPLNLREHGYDIGIRFGDP-PSTRINARLLQRNHRLVCASPAYVARNGRPAVP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  +   +          W     +     ++ S L  N   +++++ + G GIA
Sbjct: 182 HDLVRHACLIVRE---NDAAYGAWHFRRGKSTETVKVDSVLSSNDGNAVLRWTLDGHGIA 238

Query: 243 L-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALK-NTGKLKAFRNFI 290
           +     +  Y+ +    L+ ++ D   P+  +Y  Y E  + ++ K++AF +FI
Sbjct: 239 IRSAWEIAPYLARG--ELIPLLGDWKLPNADIYATYLERSEVSSAKVRAFVDFI 290


>gi|114762713|ref|ZP_01442147.1| probable transcription regulator protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114544623|gb|EAU47629.1| probable transcription regulator protein [Roseovarius sp. HTCC2601]
          Length = 298

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 12/275 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L     VA   SFT AA +L++SQS++S  I GLE  +G++L  R  R +  T +G  
Sbjct: 7   NDLIALAAVAEERSFTKAAARLNVSQSALSHAIKGLEQRLGLRLLTRTTRSVAPTLEGED 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +  + K+E   + L +S  +P+G +RI       +++L   L   L  +P + ++
Sbjct: 67  LLATLNPCFEKIEARLLALNDSRDQPTGTVRIVAVEYAIESILWPKLSPVLKEHPAVNVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++D    D++    D  +R    +    +  R      M   AAP Y +    P    E
Sbjct: 127 FVMDYGYTDLASSQCDAGVRYGDQVSEGMISMRIGPDERMICVAAPGYYEAAGVPQEPTE 186

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  H  +     T G L     ED +      +  G+   +C   N+   +++  + G G
Sbjct: 187 LSDHRCVNLRLSTHGALYAWEFEDADGNEIRVKVSGQ---TCF--NTINPVLRAAMDGHG 241

Query: 241 IALLPDYIVKDN--PNLVRIMEDVITPSFTVYFCY 273
           +AL+P+ + + +     +R   D   PSF  +  Y
Sbjct: 242 LALVPERLAQPHIEAGRLRTCLDDYCPSFPGFHLY 276


>gi|78065082|ref|YP_367851.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965827|gb|ABB07207.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 305

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 126/300 (42%), Gaps = 35/300 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G  
Sbjct: 10  NALRAFEAAARHLSVKAAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGRD 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + ++      +  S    SG L ++ T       L   L +F    PD+ +Q
Sbjct: 70  YLPPVRNAFRQIADASQRV--SGAADSGVLTVSVTPFFASAWLVPRLAQFREACPDVDLQ 127

Query: 126 LILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  +   D S D  D AIR  L + I    L   +L+T+ + A A+P  +     P + 
Sbjct: 128 VVTSHALADFSRDGVDVAIRHGLGRYI---GLCSERLLTVEIVALASPELVARLGMPATP 184

Query: 184 QEL----------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            +L           K   I FG    + ++DF          G PR      +  L  +Q
Sbjct: 185 ADLVGWPQLHDAERKGWHIWFGA---QRIDDF----------GPPRGPAFDDSGLL--LQ 229

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V G G  LLP  +V+    +  LV++ +      F  Y  YP       K+ AFR +I
Sbjct: 230 AIVAGQGAGLLPAAMVRGELASGRLVQLADVAWLDDFAYYLVYPPHHAERPKVAAFRRWI 289


>gi|37523327|ref|NP_926704.1| LysR family transcriptional regulator [Gloeobacter violaceus PCC
           7421]
 gi|35214331|dbj|BAC91699.1| LysR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 304

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 113/247 (45%), Gaps = 3/247 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F  V R GSF   A    +  S +SR ++ LE ++G++L  R  R L LTE G +
Sbjct: 4   EALRLFVEVTRRGSFAAVARDRRIDPSLVSRAVASLEHDLGVRLLQRTTRRLALTEAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L+  +  +   S  P G LR+  ++  GQ  L   L +    +P ++++
Sbjct: 64  YLGRIEPLVDELDRAREAVLVLSTGPIGTLRLTASVAFGQRCLVPLLPQLRSSFPQLRLE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L +  +D+  +  D AIRL  P      ++ K    H    A+P YL+         E
Sbjct: 124 LLLTDAKLDLVGERIDLAIRL-GPAVPGDGVRVKWFDTHYRVCASPAYLQRAHSLRDPAE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + F   +P+    + +          P    + +++ L++ +  + G G ALL 
Sbjct: 183 LPAHRCLLFA--LPEFRSQWRFRDAEGIVSEVPVDGDIVISNALALRECTLAGMGPALLA 240

Query: 246 DYIVKDN 252
            +++ ++
Sbjct: 241 HWLIDED 247


>gi|134293973|ref|YP_001117709.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137130|gb|ABO58244.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 299

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 118/282 (41%), Gaps = 6/282 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  TE 
Sbjct: 5   LNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTEA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              L      +       +           G +RI+ +  +   +L   L +    +P +
Sbjct: 65  AVALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPMLAQLHRDHPGL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+  ++  D+    AD A+R+  P Q  +L+ R++  I +  +A   YL     P +
Sbjct: 125 VIELVSTDRIQDVLNREADIAVRMAPPAQ-DALVARRIGAIEVALHARDDYLARNGTPST 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H LI F  + P     F   A    P  +     L+ +S L+ +     G GI 
Sbjct: 184 VDELARHALIGFDTVTP-----FIRAAGRAMPQWKRDAFALRTDSNLAQLAMIRAGYGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
                + + +  LVR++ D    +   +    E L+ + + +
Sbjct: 239 FCQSALARRDARLVRVLPDTPALALETWVVMHEDLRTSPRCR 280


>gi|222082091|ref|YP_002541456.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726770|gb|ACM29859.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 292

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 124/289 (42%), Gaps = 16/289 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++V   VA  GSF  AA QLH+S   ++R I+ LE   G +LF R  R + LT QG    
Sbjct: 1   MKVLVKVADVGSFAAAARQLHMSPPVVTRAIAFLEEVTGARLFLRSTRSVKLTAQGRHYV 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +     S   PSG L +   +  GQ  +   +  FL L+P +  +++
Sbjct: 61  EDCRRILSDIDEAEASAGGSYATPSGMLTVTAPVLFGQYYIMPIVTAFLALHPAVIGRVL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D AIR+   +  SS    K+ T+      AP Y +    P +  +L 
Sbjct: 121 LFDRIVNLVEEGIDVAIRIGH-LPDSSYNAVKVGTVRRVVCGAPSYFECHGLPETPADLV 179

Query: 188 KHNLIT-FGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H +I   G   P      +W    +    P   PR+ C  V + +S       G G+A 
Sbjct: 180 GHTIIANTGSSAP-----LDWHFCPEGKLSPALHPRLFCNSVEASISAASS---GWGLAR 231

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              Y +        L  I+ED       ++  +PE    + K +AF +F
Sbjct: 232 TLSYQIAKPVAEGRLRVILEDFEEEPLPIHVVHPEGRHASAKTRAFVDF 280


>gi|206562004|ref|YP_002232767.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038044|emb|CAR53990.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 290

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 129/285 (45%), Gaps = 10/285 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA+ L + Q+++ R+++ LE  +G  LF R ++G   T  
Sbjct: 1   MNWDDARVFLAIHRERTLRRAAQTLGVDQATVGRRLATLEHMLGATLFLRSSKGYLPTPV 60

Query: 63  GSKLHRVTSEV-YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G    R    +  H  E  ++       + +G+++I TT  L    +  ++      +PD
Sbjct: 61  GELALRAAEAMEQHAHELVRLT-HGVDRRLAGEVKITTTDALAIEFVMPSIARLHAKHPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L      ++++   AD AIR  +P ++  L+ R+L    M  +A+P YL+   EP 
Sbjct: 120 VSVALNTSTHILNLAKREADIAIRTVRP-ENPDLVARRLACWDMGLFASPDYLRRHGEPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +    H+L+ +   I    +          PI   RI   + NS L +      G G+
Sbjct: 179 RGRAFAGHDLVVYQPYIDASRKP----TLAGEPIDGGRI-VTRTNSNLMMRAALRAGLGV 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKA 285
             +P ++  +   L RI  D +  S + V+      L++T +++A
Sbjct: 234 GEIPVHM-GERDGLTRIWPDRMRQSPYEVWLVTHRDLRHTARIRA 277


>gi|170737987|ref|YP_001779247.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820175|gb|ACA94757.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 290

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 21/250 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +R F  V R GS + AA  L +  S+++R+I  LE+ +GI+LF R  RG   T++G 
Sbjct: 3   WDDIRYFLAVMRGGSLSAAARALQVQHSTVARRIDALESALGIRLFDRLPRGWPATDEGL 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            L    +E   +LE        ++       G +R++ +     + L   L      +P 
Sbjct: 63  HL----AEHAARLEADAHAFARAAQGAAALDGVVRVSASPVFASHFLAPRLARAQRAWPA 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L+ +    ++    AD A+RL +P +   L  R+L T+     AAP +        
Sbjct: 119 LRIDLMGEMHAANLYAREADLAVRLSRPSE-PGLAARRLGTMRFALCAAPEW-------- 169

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +    D    + + D + +  +   WL  V       R      N   +  + C  G+G+
Sbjct: 170 ADAPPDTWPFVGYDDALAQTPQQ-QWLERV----AAGRRFAFIANDLAAQHRACAAGAGV 224

Query: 242 ALLPDYIVKD 251
           ALLP ++V D
Sbjct: 225 ALLPRFLVDD 234


>gi|254248146|ref|ZP_04941466.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124874647|gb|EAY64637.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 306

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 111/254 (43%), Gaps = 21/254 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +   WD +R F  V R GS + AA  L +  S+++R+I  LE+ +GI+LF R  RG   T
Sbjct: 15  LPMSWDDIRYFLAVMRGGSLSAAARALQVQHSTVARRIDALESALGIRLFDRLPRGWPPT 74

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLL 117
           ++G  L    +E   +LE        ++       G +R++ +     + L   L     
Sbjct: 75  DEGLHL----AEHAARLEADAHAFARAAQGAAALDGVVRVSASPVFASHFLAPRLARAQR 130

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P ++I L+ +    ++    AD A+RL +P +   L  R+L T+     AAP +    
Sbjct: 131 AWPALRIDLMGEMHAANLYAREADLAVRLSRPSE-PGLAARRLGTMRFALCAAPEWAD-- 187

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
                    D    + + D + +  +   WL  V       R      N   +  + C  
Sbjct: 188 ------APPDTWPFVGYDDALAQTPQQ-QWLERV----AAGRRFAFIANDLAAQHRACAA 236

Query: 238 GSGIALLPDYIVKD 251
           G+G+ALLP ++V D
Sbjct: 237 GAGVALLPRFLVDD 250


>gi|209548056|ref|YP_002279973.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533812|gb|ACI53747.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 298

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 7/236 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  +GS + A   L  S + +S++I  LE  +G +L  R  R ++LTE G   +
Sbjct: 7   LEIFAKVVSTGSMSLAGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +  +   S +  G L+I+     G+  +  +LK F+  +P++ I L+
Sbjct: 67  DRVLGILAGLEEAEFYISGRSTQMHGTLKISAPTSFGRMHIAPHLKAFMEAHPELAINLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  DI     D AIR+ + +  SSL+ R+L  +     A+P YL    EP  I +L 
Sbjct: 127 LTDEFSDIVGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLAEHGEPGDIDDLK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H        +P    D   L   D  I       L  NS   I +  + G GIAL
Sbjct: 186 HHR------CLPAHNGDTWRLNGPDGMISLRPEGMLVTNSSEVIREAVISGLGIAL 235


>gi|206562067|ref|YP_002232830.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038107|emb|CAR54055.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 322

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 132/299 (44%), Gaps = 19/299 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  +A +G+FT   ++L ++ + +SR ++ LE  +GI+L  R  R + LTE G +  
Sbjct: 1   MQAFVTLADAGTFTETGKRLGITTAHVSRLVASLEHRLGIRLLNRTTRSMCLTEAGERYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++ ++ E +++ V P G+LR   +  +  + +   + +F   YPD+ + L 
Sbjct: 61  ARARDITLAVDASEREARDARVHPHGRLRAHCSASIANHFVIPLIGQFQARYPDVSVDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L      +  D  D A+     + SS  +   +  I     A+P YL     P S   L 
Sbjct: 121 LAPHLPKLVRDSYDVAVIAMPSLPSSEQVAIDVGRIRSVLCASPAYLDAHGMPDSPGALV 180

Query: 188 KHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            H  +    L+     +  W         TVD    +P ++   V + L+I      G+G
Sbjct: 181 HHRCV---QLVAPAYHERIWTLWNGAEAQTVDV---DPSMTA-DVAASLAIA--VREGAG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I LLPD++   +     LVR++ D       V+  Y        K +A+ +F+    RD
Sbjct: 232 IGLLPDFVAAADLRSGALVRVLSDYQAEEIGVFLVYASRQHLDAKTRAWVDFMKAALRD 290


>gi|320322273|gb|EFW78369.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331921|gb|EFW87859.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330873213|gb|EGH07362.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 301

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 133/296 (44%), Gaps = 12/296 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+   VF  V  S S T AA+QL+LS  ++S  +  LE E+G  L  R  R +++T+ 
Sbjct: 2   DKLKSMQVFVQVVDSASLTKAAQQLNLSIGTVSNYLKYLEGELGAVLLMRTTRKISITDY 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    ++  L  +          P G L I+     G       L++F  ++P I
Sbjct: 62  GVYYYKTCRSIFDLLHESAEVASNVIHNPEGVLNISMPRSFGIFGFLPTLEKFYRIHPKI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + + +  +D S +  D A+RL   +  SSL+ R L    +   A+P YL     P +
Sbjct: 122 RVDVSISDSLVDFSENRFDAAVRL-GVLSDSSLVARPLRPYKLVLCASPAYLARKGRPAT 180

Query: 183 IQELDKHNLI-TFGDLIPKC----MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            ++L  H+ I T+ D            + +L      I     + +QVN    +    + 
Sbjct: 181 PKDLIVHDCIATYFDEYRTAWNTLQNTWEFLCADGEFIKVSVPARMQVNDAQGVCIMVLS 240

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIALLP+ IV  +     L+ ++ D   PS  +   Y +      KLKAF  F+
Sbjct: 241 GQGIALLPEIIVSAHLTEGRLIELLPDYQIPSRPMSLVYRKNSLMPFKLKAFIGFL 296


>gi|332161431|ref|YP_004298008.1| LysR-family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318605408|emb|CBY26906.1| putative transcriptional regulator, LysR family [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325665661|gb|ADZ42305.1| LysR-family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 305

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 1/193 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V  S SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+
Sbjct: 4   ALDFNTLKVFIAVVESESFVGASKVLEMPTSNVSRCISQLEEKLNLQLIERSTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   YPD
Sbjct: 64  AGHLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSIVADFACQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++  + +    +   D  D AI + R  +  S  I R L+TI     AAP  ++    P
Sbjct: 124 LEVSCVTNLSGFESLRDDLDLAIIITRGQMDDSDYIARHLLTIPCTIVAAPSIIQRYGTP 183

Query: 181 LSIQELDKHNLIT 193
             IQ+ +    IT
Sbjct: 184 SHIQQFEALPCIT 196


>gi|295093382|emb|CBK82473.1| transcriptional regulator, LysR family [Coprococcus sp. ART55/1]
          Length = 365

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 23/200 (11%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F+ VA++G+ + AA QL++SQ +IS+ IS LE E+G  LF R ++G+TLTE+G  L+  
Sbjct: 10  IFHTVAKAGNISKAANQLYISQPAISKSISKLEAELGTALFSRSSKGVTLTEEGQVLYEY 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL--- 126
               +  L   +  L+       G +RI  +  L +++L   LK+F+   P+I+  +   
Sbjct: 70  VERAFDSLNMGEENLKNYKELGIGHIRIGVSTSLCKHILLDYLKDFIRENPNIKFSIDCH 129

Query: 127 -------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
                  +L N+DIDI +    C   L K I  S + +     IH    A+P YL N  E
Sbjct: 130 STVNTIKLLRNEDIDIGL---ICNTELPKGIVYSPVKE-----IHDVFVASPEYLDNFYE 181

Query: 180 PLSIQELDKHNLITFGDLIP 199
                  +  +  +F D +P
Sbjct: 182 -----RTNGRDQYSFADELP 196


>gi|229589888|ref|YP_002872007.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361754|emb|CAY48636.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 291

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 130/283 (45%), Gaps = 8/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  V R  +   AA  L + Q+++ R+++ LE  +   LF R + G  LT  
Sbjct: 1   MNWDDARVFLAVCRESTLRGAARVLGVDQATVGRRVNALEKSLSATLFLRTSEGYALTAV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        ++       + ++Q    + +G +R++TT  L  + L   +      +PD+
Sbjct: 61  GEAALLSVEKMERSALDLERQIQGLDERLTGTVRVSTTDSLAIDFLIPAIACLHAKHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL    + + ++   AD A+R  +P  +  LI R++    +  +A+  Y+     P  
Sbjct: 121 RVQLDASTQILSLAKREADIAVRNTRP-DNPDLIARRIARWSVGLFASQGYIDRHGVPEP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D H+L+ +   + +  +D   +A V  P+G  RI    ++S L + +    G GI 
Sbjct: 180 GSLFDGHDLVVYQPYL-QSQKD---MALVSEPLGRGRIVA-ALSSSLLVRRSIAAGIGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLK 284
            +P Y   +   LVR+  +   P  + V+      L++T +++
Sbjct: 235 EIPVY-TGERDGLVRLWPERTRPLPYDVWLVTHADLRHTARVR 276


>gi|207722243|ref|YP_002252679.1| hypothetical protein RSMK04825 [Ralstonia solanacearum MolK2]
 gi|206587420|emb|CAQ18002.1| hypothetical protein RSMK04825 [Ralstonia solanacearum MolK2]
          Length = 318

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 8/220 (3%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           L ++ +++S+ ++GLE  +G++L  R  R L LTE+G    R        L+     +  
Sbjct: 29  LGITSAAVSKNVAGLEKALGVRLMNRTTRTLNLTEEGRAFLRQARVALDALDAAIDTIAA 88

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
             V PSG++RI+T+   G+  L   L   L  YP + +++  D++ +D+  D  D AIR 
Sbjct: 89  QRVVPSGRVRISTSWAFGREQLMPALPGLLSRYPALSVEVDFDDRIVDLVRDGYDLAIR- 147

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT----FGDLIPKCM 202
              I  S+L+ R +  +++   A+P YL     P + Q L  H LI      G + P   
Sbjct: 148 GGSIPDSALVSRPIFRLNLVLVASPDYLVRHGVPQTPQALRSHRLIARRFLGGAVAPWGF 207

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              N   T   P      + L +++  S++Q    G GIA
Sbjct: 208 SAENGSLTTFDPADA---AVLTLSAPESVVQAACSGVGIA 244


>gi|209549638|ref|YP_002281555.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535394|gb|ACI55329.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 297

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 95/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR+ SFT AA +L +SQS++S  I GLE  +G++L  R  R ++ TE G +
Sbjct: 7   NDLIAFLAVARAKSFTKAAAKLGVSQSALSHTIRGLEERLGLRLLTRTTRSVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L         ++ET  + L     KP+G +RI         +L   L++ L  YPDI ++
Sbjct: 67  LLLTIGPRLDEIETELVALSAFREKPAGSIRINAGEHAADAVLWPALEKLLPDYPDINVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+D    DI  +  D  +RL + +    +  R    + M    AP Y +   +PL+ Q+
Sbjct: 127 IIVDYGLTDIVAERYDAGVRLGEQVAKDMIAVRIGPDMRMAVVGAPGYFERRTKPLTPQD 186

Query: 186 LDKHNLITF 194
           L  HN I  
Sbjct: 187 LTDHNCINL 195


>gi|153001675|ref|YP_001367356.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151366293|gb|ABS09293.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 314

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 28/290 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT  G +
Sbjct: 5   EAAKVFVTIVERGSMVSAANALDMSRSMVTRYLSEMEEWSGARLLHRSTRSLSLTPAGEQ 64

Query: 66  L----HRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +    HR+      +L      +  +SV  P G LRI+ +  L   +L   + ++L  YP
Sbjct: 65  VLDYCHRLL-----ELANEVPAVSHASVAIPRGLLRISCSQFLAHQILAPVVNQYLASYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              + + + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      
Sbjct: 120 QASVNIHVSSQTVDLVAERIDLAIRITNELD-PNLIARRLGECESVVCAAPSYLAARAAV 178

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VN 226
           L  ++L +HN +T   FGD++ +  +       V     +P+++  Q            N
Sbjct: 179 LHPEDLTQHNCLTYSYFGDVMWRFYQADVAAKQVQALNSDPKLNQGQAFNVPVNGNFSAN 238

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
             + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y
Sbjct: 239 DSMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVY 288


>gi|170736720|ref|YP_001777980.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818908|gb|ACA93490.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 315

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 129/286 (45%), Gaps = 10/286 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD  RVF  + R  +   AA+ L + Q+++ R+++ LE  +G  LF R ++G   T 
Sbjct: 25  TMNWDDARVFLAIHRERTLRRAAQTLGVDQATVGRRLATLEHMLGATLFLRSSKGYLPTP 84

Query: 62  QGSKLHRVTSEV-YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            G    R    +  H  E  ++  Q    + +G+++I TT  L    +  ++      +P
Sbjct: 85  VGELALRAAEAMEQHAHELVRL-TQGVDRRLAGEVKITTTDALAIEFVMPSIARLHTKHP 143

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L      ++++   AD AIR  +P ++  L+ R+L    M  +A+P YL    EP
Sbjct: 144 DVSVALNTSTHILNLAKREADIAIRTVRP-ENPDLVARRLACWDMGLFASPDYLHRHGEP 202

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +    H+L  +   I    +          PI   RI   + NS L +      G G
Sbjct: 203 ERGRAFAGHDLAVYQPYIDASRKP----TLAGEPIDGGRI-VTRTNSNLMLRAALRAGLG 257

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKA 285
           +  +P ++  +   L RI  D +  S + V+      L++T +++A
Sbjct: 258 VGEIPVHM-GERDGLARIWSDRMRASPYEVWLVTHRDLRHTARIRA 302


>gi|237729235|ref|ZP_04559716.1| substrate-binding transcriptional regulator [Citrobacter sp. 30_2]
 gi|226908964|gb|EEH94882.1| substrate-binding transcriptional regulator [Citrobacter sp. 30_2]
          Length = 308

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 141/296 (47%), Gaps = 26/296 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +   G  + AA QL++S S++S+ ++ +E  +G  L  R  R +TLT+ G  L 
Sbjct: 10  LEFFTKIVDCGGLSEAAAQLNVSPSAVSKSLAAMEDTLGTTLIKRTTRSITLTDAGQYLF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++  + + T          P G+LRI  +I  G + L   + ++   +PD+ + + 
Sbjct: 70  NRANKLLKEFDETLNTTSGYYHSPQGELRITCSIAFGYSRLVNLVDKYRSQFPDVNLYID 129

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L++  ++++    D A+R+   P Q+ ++  RKLV +     A+P YL     P    +L
Sbjct: 130 LNDNFVNLNETDFDIALRISTAPPQNYAM--RKLVPVRWAYCASPGYLAKKGMPQRRSDL 187

Query: 187 DKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             H+ + +  L P  K  ++ + L  +   +       +Q NS L +++  +   G+A L
Sbjct: 188 VDHDCLVYPGLTPVLKVADEQDRLHQLKLHMP------IQANSSLVLLKSVLEDQGVAYL 241

Query: 245 PDYIVKDNPNLVRIMEDVITP----------SFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y++ D+     I ++ ITP          +  +Y  Y  +  +  K+++F +F+
Sbjct: 242 PTYLIGDH-----IQKEEITPLMLDGTITCETHALYALYFPSKYSNPKVRSFIDFL 292


>gi|170693129|ref|ZP_02884290.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142127|gb|EDT10294.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 307

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 1/190 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  +A  G+ T AA +L  S  ++SR +  LE E G  L  R  R   LT  G + +
Sbjct: 16  LEVFVAIAEEGNLTAAARRLDRSLQAVSRSLQVLEREAGTLLVARTTRQCRLTTAGEQFY 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   L   + EL E +   SG+LRI      G   +   +  FL  YP +   L 
Sbjct: 76  TRIKQVLADLAMARAELAEHATTVSGRLRICGPTLFGPRYIAPLVAAFLARYPRLTASLD 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D +   AD  IR+ +    S+LI R+L TI    +A+P YL+    PL   +L 
Sbjct: 136 LSEEYDDPATSGADVTIRIGE-TPDSNLIARRLGTIRRVTFASPAYLEARGRPLRPADLK 194

Query: 188 KHNLITFGDL 197
           +H+ +    L
Sbjct: 195 QHDCVVRSSL 204


>gi|167723194|ref|ZP_02406430.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 219

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 1/188 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++ 
Sbjct: 1   MQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQML 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  ++    E     + E    P G LRI  +    Q  +   + ++L+ YP + + L+
Sbjct: 61  PLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLVRYPAVSVDLL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L 
Sbjct: 121 VTDRTADLVDERIDLAIRITNAVD-PSLIARRLGTCRSALCASPGYLAEHGVPKRPHDLT 179

Query: 188 KHNLITFG 195
           +HN +T+ 
Sbjct: 180 RHNCLTYA 187


>gi|209520338|ref|ZP_03269103.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499212|gb|EDZ99302.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 292

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 20/244 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA++L+++Q+++S+Q+  LE  +G  LF R  RGL +TE+G  
Sbjct: 8   NALRAFESSARHLSFTRAAQELNVTQAAVSQQVRSLEERLGTALFKRLPRGLAITEEGRA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+ + ++E    +           + +  T  +G   L   LK F   +P ++++
Sbjct: 68  LQPVLSDAFDRIEAVLKQFDGGHFHEVLTVGVVGTFAVG--WLMPRLKSFRDAHPFVELR 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N  +D++ +  D AIR        SL   KL+   +    AP        P    +
Sbjct: 126 LLTNNNLVDLATEGLDFAIRFGDGTWPGSLAT-KLLDAPLALLCAPEIAARLARP---DD 181

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L    L     L    M+D+ NW A      RP+  P       +S   +++  + G+G+
Sbjct: 182 LANETL-----LRSYRMDDWMNWFAAAGIAPRPVRGPVF-----DSSRLMVEAAIQGAGV 231

Query: 242 ALLP 245
           AL P
Sbjct: 232 ALAP 235


>gi|167614913|ref|ZP_02383548.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 302

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 135/303 (44%), Gaps = 34/303 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-- 63
           + LR F V AR  +F  AA ++ ++Q ++++Q+  LE  +G++LF R  RGL LT  G  
Sbjct: 13  NALRAFEVSARHLNFRAAAGEIGVTQGAVAQQVRHLEDTLGVRLFERLPRGLALTADGLA 72

Query: 64  --SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             + + R  + +     T ++  + SSV       I+TT       L   L  F   +PD
Sbjct: 73  YFADVRRALNLIGDA--TDRLAKRRSSVT------ISTTPSFASRWLIPRLASFGDEHPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL----KNC 177
           + I++I D++      D  D AIR  KP     L+ R L  + +HA  +P  L       
Sbjct: 125 VDIRVIADSQFATFQGDGVDLAIRYGKPPFGKGLVARLLFPVDIHAVCSPALLAPSGARA 184

Query: 178 REPLSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           R+ L+ Q L  D H      DL P+ +      A VD P   PR +     S L+I    
Sbjct: 185 RD-LAGQVLLHDAH------DLWPEFLAALPERAAVD-PAKGPRFN----QSSLAI-DAA 231

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G G+AL  D +V    +   L R+ +  +  S   Y  YP   +    +     ++  
Sbjct: 232 IAGHGVALASDQLVARDIEAGRLRRLFDFALPLSIGYYIVYPNEPRRPDDIAKTEAWLIR 291

Query: 293 KAR 295
           +AR
Sbjct: 292 EAR 294


>gi|78049440|ref|YP_365615.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037870|emb|CAJ25615.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 308

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 16/296 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +   V   GSF+ A   L   +S +SR+++ LE  +G++L  R  R ++LTE G
Sbjct: 3   DLNDFALLVAVVDHGSFSAAGRALGFPRSKVSRRVADLEQRLGVRLLQRSTRAVSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ +     +    +      + ++  PSG++R++    +    L   L  FLL +PD+Q
Sbjct: 63  AEFYTHCKSITRSAQWALDVAERATQHPSGRIRVSCPTGVAHLFLAKLLPRFLLAHPDVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +++  +  D AIR+R  +  S LI R          A+P ++       S 
Sbjct: 123 VDLELTSRRVELIAEGIDVAIRVRSSLDDSGLILRSFGVSRQALVASPGFVHAHGPFASA 182

Query: 184 QELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
             L  H ++  G   P+ +  E   W  T   P G   +    S L       + Q  + 
Sbjct: 183 AAL--HEVLGMG---PRGVNGEPPRWRLT--SPQGTSELVDYRSRLFTEDVELLHQAALA 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+A LP  + + +     LV ++ D   P   ++  YP        ++A   F+
Sbjct: 236 GMGVAQLPLALCRGSIARGELVVLLGDHTLPVHQLHAVYPSRRGLAPGVRALIEFL 291


>gi|295689438|ref|YP_003593131.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295431341|gb|ADG10513.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 306

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 111/247 (44%), Gaps = 17/247 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V R+GSF+ AA +  ++ S+I RQI  LE  +G+++  R  R L +T+ G +L   
Sbjct: 12  VFVDVVRAGSFSGAARRRGVTPSAIVRQIDALEHGLGVRVLVRSTRALAMTDAGQRLFER 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L     E+       +G LR+A     G+  +       +  +P + ++L L 
Sbjct: 72  GQRLIDDLVDVHAEIAAFDGAVAGVLRVACFPTFGKRYVLPVAGALMRQHPGLSVELDLT 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            +  D  +D  D AIR+ + +  S LI  KL        A+P YL     P S+++L  H
Sbjct: 132 ERLADPVLDRLDAAIRIGQ-LTDSGLIATKLADQARLLVASPDYLARYGAPGSVEDLRGH 190

Query: 190 NLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVLGSGIA 242
            ++      DL+        W   +    G+P  +C QV    + + ++      G G A
Sbjct: 191 RVLDKLHGADLL-------GWTDLLGGAAGQP--NCGQVVFRSDDFEALRLAAREGVGAA 241

Query: 243 LLPDYIV 249
           LLP ++ 
Sbjct: 242 LLPSWVA 248


>gi|260775724|ref|ZP_05884620.1| probable transcriptional regulator [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608140|gb|EEX34309.1| probable transcriptional regulator [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 301

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 135/281 (48%), Gaps = 17/281 (6%)

Query: 6   DKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL    VF  V    SF  AA+ L LS+S++S+ I+ LE  +G+ L  R  R + +T  
Sbjct: 2   DKLVAANVFKRVVELDSFHLAADDLGLSRSAVSKNIAELEGFLGVALITRTTRTMRVTPT 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +R   ++         +   +S +  G L ++  + LG   +Q  L +F   YPD+
Sbjct: 62  GEEYYRQVCQLLDMWAMADQQAMAASSRMQGTLTVSIPMSLGLVSIQPKLCQFAKQYPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L ++ ID+     D AIR    ++ S+L  RKL T+     AAP YL +   PL+
Sbjct: 122 LLNVLLSDEQIDLVTGGIDVAIRGSGHLKDSTLHARKLDTLPRVLCAAPCYLADIDLPLN 181

Query: 183 -IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVL 237
              +L  H+ + +           NWL   +    E +I+     +Q N+ L++ Q CV 
Sbjct: 182 HPSDLSHHDCLIYS----LSTSPTNWLFYSEAE--ECQIAIHQIRMQTNNTLALKQACVE 235

Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPE 275
           G G+ L P  +V++      L  I+ D   P+  VY  YP+
Sbjct: 236 GLGVMLAPKIMVEEELTRGVLQPILTDWRIPNHDVYAVYPQ 276


>gi|239626248|ref|ZP_04669279.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239520478|gb|EEQ60344.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA]
          Length = 304

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 34/309 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  + ++FY VA++G+ + AA++L++SQ +IS+ IS LE  +G+ LF R +RG+ LT
Sbjct: 12  MEQNLSQYKIFYEVAKAGNISKAAKELYISQPAISKAISKLEDSLGLSLFTRSSRGVQLT 71

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L   T E +  L+  ++EL+       G LRI  +  L + +L   LK F+  YP
Sbjct: 72  AEGEILFEHTREAFDALDRGEMELKRIQEFDIGHLRIGVSNTLCKYILLPYLKTFIDQYP 131

Query: 121 DIQIQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
            +++ +           L+ + ID+ +  A+ ++R          IQ   VT    +Y  
Sbjct: 132 HMKVTIESQSTALTLTRLEQQKIDLGL-VAEPSVRRDLAFIPVMDIQDIFVT--TPSYLE 188

Query: 171 PHYLKNCR-----EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV 225
             YL+  R     E  +I  LD  N+      + + M D N L         PR   L+V
Sbjct: 189 NLYLREGRDTNIFETGNIMLLDTSNMTRHH--VDEYMSDNNIL---------PR-QVLEV 236

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
            +   ++++  +G GI  +   +V+   DN +LV I  ++     T+ F Y  +      
Sbjct: 237 TTMDLLIEFAKIGLGIGCVIKELVQKELDNGSLVEIPLEIPIHRRTIGFAYHPS-NQAMA 295

Query: 283 LKAFRNFIF 291
           LK F  F++
Sbjct: 296 LKTFLEFLY 304


>gi|148554644|ref|YP_001262226.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148499834|gb|ABQ68088.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 326

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 16/291 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   AR  SFT AA +L L+QS++SRQI  LE  +G +LF+R  + + LT  G+   R 
Sbjct: 42  AFDAAARHQSFTAAARELALTQSAVSRQIRALEELLGSELFHREKQKVKLTLAGNAYARE 101

Query: 70  TSEVYHKLETTQIELQESSVKPSG-KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                 ++ +  +  +     P G  L +A     G   L   L  FL  +PDI + +  
Sbjct: 102 IRGALARISSATLGFR---ANPGGASLHLALLPMFGLRWLMPRLPGFLAAHPDITVHVST 158

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQELD 187
                D   +  D AI   +   + + + R +  T+      A        +P  + E  
Sbjct: 159 RTTPFDFRTETIDAAIHFGEGEWAGAQLDRLMGETVAPLCSPALRARLGAAKPADLIEAP 218

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             +L++     P   E   W A ++   GE  +  + ++ +L + +    G G+ALLP++
Sbjct: 219 LLHLMS----RPDAWE--RWFAAMEVDPGE--VHGMLLDQFLLVAEAARAGLGVALLPEF 270

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +V+    + +LVR ++  +  +   Y  +P   +    L AFR +I  +AR
Sbjct: 271 LVEAELRSGDLVRALDAPVVQADHYYLVWPHTHERHPPLDAFRTWILQEAR 321


>gi|115352583|ref|YP_774422.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282571|gb|ABI88088.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 309

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 125/287 (43%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT  G+ 
Sbjct: 5   DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTADGAL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +      +       G+L +     + + ++   L      +P +Q+ 
Sbjct: 65  LLERGRRLLAEADELDRLFRRRDRDVVGRLNVDAPSRIARRVIAPALPSLFRRHPKLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P     
Sbjct: 125 LGSTDRTIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFVLINCASPDYLRECGVPEHPDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H     G   P    +  W    D   G+  +   S + VN+  + +  C+ G G+ 
Sbjct: 184 L-AHGHWAIGYASPTTGRELGWEYCADG--GQHTLTLPSRVIVNNAETYIASCIAGMGLI 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P + V    D+  LV +M         V   YP     + +L AF
Sbjct: 241 QIPRFDVAHLLDSGALVEVMPGHRAAPMDVSAVYPHRRHRSRRLNAF 287


>gi|91229368|ref|ZP_01262919.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91187404|gb|EAS73755.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 260

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 100/197 (50%), Gaps = 5/197 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS+++  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVKSYIRVVEEGSFNAAARKLNTTSSAISKRVQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYQRAKSQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLDKYPD 120

Query: 122 IQIQL--ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           I +QL   L  +  ++S+D      R  + + S S     L       YAAP YLK    
Sbjct: 121 ITLQLTTTLPGQLPELSLDL--FISRELEQLNSLSFKATALFEHKAQFYAAPSYLKKYGT 178

Query: 180 PLSIQELDKHNLITFGD 196
           P  +++L +HN++ +G+
Sbjct: 179 PQCVEDLTEHNVLIWGE 195


>gi|15838331|ref|NP_299019.1| LysR family transcriptional regulator [Xylella fastidiosa 9a5c]
 gi|9106798|gb|AAF84539.1|AE003996_8 transcriptional regulator (LysR family) [Xylella fastidiosa 9a5c]
          Length = 296

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 133/296 (44%), Gaps = 34/296 (11%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSF  AA + ++  SS+SR ++ LE E+G +LF R+ R L LTE GS        +  +L
Sbjct: 7   GSFAAAAREQNVDPSSVSRAVAALEAELGTRLFARNTRHLALTEAGSVFTERLPLLLEEL 66

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
              +    +++ +  G+LR+  +       L   L  F   +P I++ L+L    +D+  
Sbjct: 67  SQARDAAVDTTGEVRGRLRVTVSNAFAMRHLSPLLPAFYEAHPAIELDLLLTESPVDLVS 126

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELDKHNLITFGD 196
           +  D AIRL   ++ SSLI   L+ I  H  A+P +++    PL   Q+L     ++F  
Sbjct: 127 ERVDVAIRLGN-LRDSSLIAVPLMPIRYHVAASPAWVRAQTAPLREPQDLQAIRCLSF-- 183

Query: 197 LIPKCMEDF--NWL-ATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIALLPDYI 248
                +  F   WL A  D   G   I       L   + L +    + G G  LL D++
Sbjct: 184 ----ALAGFRDRWLFAPAD---GGAEIEVHVRPRLVSTNALMLRDGALSGLGPTLLADWV 236

Query: 249 VKDN----------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + D+          P    ++    +P+ T +  YP       K++AF   +FL+A
Sbjct: 237 IGDDLASGALEALFPG--HVVRTAHSPT-TAWAVYPSRSHVPAKVRAF--VVFLQA 287


>gi|330501000|ref|YP_004377869.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328915286|gb|AEB56117.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 297

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 147/302 (48%), Gaps = 25/302 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++  F  V  SGS + AAEQL  + S +SR +S LE ++G+ L  R  R L LT
Sbjct: 1   MKTSLEEMLAFVSVVDSGSISAAAEQLEQTASGVSRALSRLEEKLGVTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E  + ++   S  P+G+LRI T      + +   + EF  LYP
Sbjct: 61  EEGEVFLAQARRILTSVEEAEEQMTLRSQAPAGRLRINTASPFMLHAIVPLIGEFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D++ ID+     D AIR+   +  SSL  R L   +    A+P YL     P
Sbjct: 121 QIELELNSDDRIIDLLERRTDLAIRIGH-LPDSSLHARPLCHSYRRVLASPEYLSRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RIS-CLQVNSYLSIMQYCVLG 238
           L  ++L  H+LI F +  P  + ++     +   +GE  RI+  L+ +S  +I++  + G
Sbjct: 180 LRTEDLPGHSLIGFTE--PDSLNEW----PLRHALGERWRITPSLRASSGDTILELALAG 233

Query: 239 SGIALLPDYI---VKDNPNLVRIME----DVITPSFTVYFCYPEALKNTG---KLKAFRN 288
            G+  L D++    + +  LV ++     +V  P   VY+      +NT    ++  F +
Sbjct: 234 EGMVCLSDFMTDTARASGALVEVLAEQRVEVRQPINAVYY------RNTALASRITCFLD 287

Query: 289 FI 290
           F+
Sbjct: 288 FL 289


>gi|299069388|emb|CBJ40654.1| putative transcription regulator, LysR family; putative ttuA
           activator [Ralstonia solanacearum CMR15]
          Length = 306

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 136/294 (46%), Gaps = 16/294 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A +GS + AA  L ++  ++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 10  ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++     L ++  +P G LR+  T+  G+  +   + E++  YP + +QL
Sbjct: 70  LEHARRILGEIDDLDQLLTQAKGRPRGLLRVNATLGFGRRHIAPAISEYVRQYPGVDVQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  IR  +P   + +I RK+        AAP YL     PL+  +L
Sbjct: 130 QLTADPPPLNEDAFDVCIRFGEP-PDARIIARKVAPNRRLLCAAPDYLHRHGTPLAPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239
            +HN I     I +  + +  W  T  +   + R   + V   L+       + + + G 
Sbjct: 189 ARHNCIG----IRQGSDAYGVWRLTSGKG-AKRRTETVHVRGNLTTNDGEIAVNWALEGH 243

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  ++ V+       LV+++    TP   +Y  Y +  + + +++ F +F+
Sbjct: 244 GIVMRAEWDVERYLRGGQLVQVLPLYATPEADIYAVYLQRHQLSPRIRLFVDFL 297


>gi|163816821|ref|ZP_02208184.1| hypothetical protein COPEUT_03011 [Coprococcus eutactus ATCC 27759]
 gi|158448078|gb|EDP25073.1| hypothetical protein COPEUT_03011 [Coprococcus eutactus ATCC 27759]
          Length = 365

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 93/180 (51%), Gaps = 18/180 (10%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F+ VA++G+ + AA QL++SQ +IS+ IS LE E+G  LF R +RG+ LTE+G  L+  
Sbjct: 10  IFHTVAKTGNISKAASQLYISQPAISKSISKLEAELGTALFSRSSRGVVLTEEGQVLYEY 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL--- 126
               +  L   +  L+       G +RI  +  L +++L   LK+F+   P+I+  +   
Sbjct: 70  VERAFDSLNMGEENLKNYKELGIGHIRIGVSTSLCKHILLDYLKDFIRENPNIKFSIDCH 129

Query: 127 -------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
                  +L N+DIDI +    C   L K I  S + +     IH    A+P YL N  E
Sbjct: 130 STINTIKLLRNEDIDIGL---ICNTELPKGIVYSPVRE-----IHDVFVASPEYLDNFYE 181


>gi|186473797|ref|YP_001861139.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196129|gb|ACC74093.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 320

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 95/190 (50%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  +   GSFT A+E+L +S  ++SR +  LET VG +L  R  R +  T+ G 
Sbjct: 4   FREMEVFVAIVDRGSFTGASEKLGMSAPTVSRALHSLETRVGAQLIARTTRSIRPTDAGM 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   V   +   +  +     KP+G L ++  +  GQ  +   +  ++  YPD+ +
Sbjct: 64  FYLDACRSVLDTITDAEANISAGQDKPAGTLTVSAPVLFGQRFIAPLINAYVNSYPDVSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++  ++   +  +  D A+R+   +  SS+    L ++    YAAP YL    EP+  +
Sbjct: 124 KVVYVDRTTRLIEEGVDIAVRIGH-LGDSSVFAVPLGSVCRRTYAAPAYLDAYGEPVHPK 182

Query: 185 ELDKHNLITF 194
           ++ +H+ +++
Sbjct: 183 DIGRHHCVSY 192


>gi|90579704|ref|ZP_01235513.1| putative transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
 gi|90439278|gb|EAS64460.1| putative transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
          Length = 303

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 135/272 (49%), Gaps = 18/272 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F V+   GS+T A+ +L ++ S++S+QI+ LE  + +KL  R  R L ++E G++++
Sbjct: 13  LATFIVIVDEGSYTAASRKLGVTPSALSKQIARLEKALSVKLLERTTRKLMISESGNRIY 72

Query: 68  R-VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  T  +    +  +I   E +V PSG + IA        LLQ  +K FL  YP++ ++L
Sbjct: 73  KQCTQMIDAAKQAIEISSSEHTV-PSGTVTIAAPKAFMNILLQPLVKPFLTQYPEVNLKL 131

Query: 127 ILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DIDI  +  D   RL  +P  S  L+ +K+  +++   A+P+Y+     P+  ++
Sbjct: 132 KACDGDIDIIAEGIDVVFRLTERP--SEGLVLKKIGKVNLTLCASPNYIAQRGMPIHPRD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS----GI 241
           L  H+ +   +     + DF+         GE     +     ++  Q  + G     GI
Sbjct: 190 LKHHDCLYLAETNIDHIWDFD-------KNGEQITVAVSGRYAVNHSQMRLKGVKDDLGI 242

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
            + PD+++K +    ++++  + P +T+   Y
Sbjct: 243 GIFPDFVIKHDLVAGKVIQ--VLPDWTIRGNY 272


>gi|238783694|ref|ZP_04627714.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           bercovieri ATCC 43970]
 gi|238715407|gb|EEQ07399.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           bercovieri ATCC 43970]
          Length = 298

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 130/286 (45%), Gaps = 12/286 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68
           VF  +   GS   AAE L +S++ ++R ++ +E   G++L +R  R L+LT  G + L R
Sbjct: 9   VFVAIVERGSMIAAAESLAMSRAMVTRYLAQMEQWAGVRLLHRTTRKLSLTHAGEATLER 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +   ES     G LRI+ +  LGQ+ L   + ++L  YP + + L +
Sbjct: 69  CRRMLEFAQDMNAVVGPESG-GLHGLLRISCSQSLGQSALVIAVTDYLRRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L T H    A+P YL     P +  +L  
Sbjct: 128 NNRAVNLVEERIDLALRITNELD-PNLIARPLATCHSVVCASPAYLSAKGVPKNPSDLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           HN +T+     K +  F+         +G      L  N  + ++   + G+GI L P Y
Sbjct: 187 HNCLTY-SYFGKSLWHFDQQGVKSSVAVG----GNLSANESVVLLSGALEGAGITLQPSY 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                     L++++ D    +  +Y  Y    +    L+   +F+
Sbjct: 242 SAAPYIARGELIKLLPDYQPQAMGIYGIYTSRRQMPATLRTMLDFL 287


>gi|107026054|ref|YP_623565.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692762|ref|YP_838295.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105895428|gb|ABF78592.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650762|gb|ABK11402.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 111/254 (43%), Gaps = 21/254 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +   WD +R F  V R GS + AA  L +  S+++R+I  LE+ +GI+LF R  RG   T
Sbjct: 15  LPMSWDDIRYFLAVMRGGSLSAAARALQVQHSTVARRIDALESALGIRLFDRLPRGWPPT 74

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLL 117
           ++G  L    +E   +LE        ++       G +R++ +     + L   L     
Sbjct: 75  DEGLHL----AEHAARLEADAHAFARAAQGAAALDGVVRVSASPVFASHFLAPRLARAQR 130

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P ++I L+ +    ++    AD A+RL +P +   L  R+L T+     AAP +    
Sbjct: 131 AWPALRIDLMGEMHAANLYAREADLAVRLSRPSE-PGLAARRLGTMRFALCAAPEWAD-- 187

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
                    D    + + D + +  +   WL  V       R      N   +  + C  
Sbjct: 188 ------APPDTWPFVGYDDALAQTPQQ-QWLERV----AAGRRFAFIANDLAAQHRACAA 236

Query: 238 GSGIALLPDYIVKD 251
           G+G+ALLP ++V D
Sbjct: 237 GAGVALLPRFLVDD 250


>gi|198243188|ref|YP_002215467.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197937704|gb|ACH75037.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326623215|gb|EGE29560.1| Regulatory protein LysR [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 301

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|187923426|ref|YP_001895068.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714620|gb|ACD15844.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 303

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 126/289 (43%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++RVF  +A   SFT A++ L + +++++  +  +E  +G +L  R  R + LT  G 
Sbjct: 4   FEEMRVFIRIAERQSFTRASDDLQIPRATVTNLMKRMEQRLGARLLERTTRTVRLTHDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   +E  + E   S++ P G LR+     L ++ +   L  FL  +P I++
Sbjct: 64  AYYRRCVRLIADME--EAEGSFSNLAPKGLLRVNLQGTLARHFVVPALPAFLARFPGIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP    
Sbjct: 122 TIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLAAYGEPAEPS 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H  + +            +     R +     S + V          + G GI  +
Sbjct: 181 ALSTHRAVNYVSSATAKAVPLEF-KVAGREVAMVLPSAVSVTGTELYTGSALAGLGIVQV 239

Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y V       R   I+ D   P   V   YP+  + + +++ F  ++
Sbjct: 240 PQYRVAAELATGRLKIILADFPPPPMPVSVLYPQNRQLSSRVRVFAQWL 288


>gi|254252670|ref|ZP_04945988.1| Regulatory protein LysR [Burkholderia dolosa AUO158]
 gi|124895279|gb|EAY69159.1| Regulatory protein LysR [Burkholderia dolosa AUO158]
          Length = 299

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 87/161 (54%), Gaps = 1/161 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR GSF  AA      ++++SR+++ LE  + ++LF R ARG+ LT++G  L+  T
Sbjct: 9   FNLVARHGSFGEAARAAGRPKATLSRRVTELENALHLRLFERGARGVKLTQEGRALYERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  +   +     +P G+LRI+      Q  +   +  F L YPD+++++  ++
Sbjct: 69  GALLAELVDSASAIASGGERPRGRLRISAPALFSQLAMSKLVATFALAYPDVRLEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP 171
           + +D+  +  D  IR+  P +  SLI R  +   +   AAP
Sbjct: 129 RAVDMVEEGYDLVIRV-NPARDESLIGRVFLRDRLVVVAAP 168


>gi|325276028|ref|ZP_08141845.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324098839|gb|EGB96868.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 317

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 114/249 (45%), Gaps = 6/249 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V +SGSF+ AA +  L+ S+++R+I  LE  VG +LF R    +  T  G  
Sbjct: 8   EQLSLFLDVLQSGSFSAAARRYPLTPSAVARRIDALEAAVGSRLFTRSTHAVRATPAGHA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FLL YP + + 
Sbjct: 68  FAERAKRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLLAYPGLDVH 127

Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+   +    D  +R   P+  + L+   L  +   A A+P YL +   P  
Sbjct: 128 LRLIDSFVDLHGSHLGEVDLVLRA-GPLADTRLVATPLAYMVRIACASPTYLASRGMPSC 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H+ + +  L P     F  +A   R +  P    +  N+  +++   + G GIA
Sbjct: 187 PSELPGHDGLDWDGLAPPYAWRFE-VAGQTR-LYRPARMRMAANNAETLLFGALAGLGIA 244

Query: 243 LLPDYIVKD 251
            LP +++ +
Sbjct: 245 HLPTWLISE 253


>gi|262194795|ref|YP_003266004.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262078142|gb|ACY14111.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 310

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 1/171 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F      GSF   A    +S SSISR +S LETE+ ++LF R  R L+LTE G    
Sbjct: 6   IRAFVHTVELGSFAAVARAERVSPSSISRLVSELETELCVRLFQRTTRRLSLTEAGRVYL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +LE  +   +E S  P G LR+A      Q  L   L  FL  YP++ ++L+
Sbjct: 66  DRVAPLLEELERARDLARELSATPRGVLRVACAPTFAQMHLARWLPSFLQRYPELDVELV 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L+    D+     D A+RL + +  ++L+ +KL  +     A+P +L   R
Sbjct: 126 LEVGVTDLIAARIDVALRLGR-VDGATLVAKKLCEMPRVVVASPQWLDGRR 175


>gi|254474589|ref|ZP_05087975.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214028832|gb|EEB69667.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 298

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 131/298 (43%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD +RVF  VAR  S + A   L +  +++ R+IS  E  +   LF +  +G  L+
Sbjct: 1   MDPQWDDMRVFLAVARESSLSGAGRVLKMDPATVGRRISRFEEALDTPLFVKSPQGYALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L          +   Q  L   S   SG++RI         LL           P
Sbjct: 61  AAGDRLLGHAEAAEQAMRAGQEALAGPSDTLSGQIRIGAPDGSANYLLPQVCARISEDNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ IQ++   + I++S   AD A+ +  P     L+Q K+    +H   + HYL++    
Sbjct: 121 DLDIQIVALPRVINLSRREADMAVTVSAPTAGQLLVQ-KITDYKLHLVGSRHYLRDHPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             +++L KH +I +   IP  + D   ++L      +G  R++ L  NS    ++    G
Sbjct: 180 EKLEDLKKHKMIGY---IPDMIFDRELDYLNN----LGIERVA-LASNSVSVQIKLAAEG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + + +  D+ +  + +L +++ D I+ + + Y    +  + + +L  F   +    RD
Sbjct: 232 TALCVAHDFTLPAHRSLRKVLTDKISLTRSFYLVRHQGDQRSERLNRFAQALSKGIRD 289


>gi|207856808|ref|YP_002243459.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206708611|emb|CAR32933.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 301

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|190890919|ref|YP_001977461.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190696198|gb|ACE90283.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 293

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 8/240 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V       GS + AAE+L +S++  SR I+ +E     +L +R  R L+LT  G ++  
Sbjct: 8   KVLLKTVERGSASAAAEELGMSRAMASRYIAAMEDWSETRLLHRTTRQLSLTSAGERVLD 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
           +  ++  ++     E+   +  P G LR+     L +  L   L +F  LYP I++ L +
Sbjct: 68  MCRDIV-RVADAVTEVATHAETPHGLLRVTAPAILAEAQLIPLLSDFADLYPRIKVDLQI 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ID+  D  D AIR+   +   SLI ++L       YA+P YL+    P   ++LD+
Sbjct: 127 SDRAIDLVQDRIDLAIRIANRLD-PSLIAKRLGQCSSLLYASPQYLEKYGIPTGPEDLDR 185

Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  +T+  L         W L + +  I        Q N  +++ +  + G GIA+LP +
Sbjct: 186 HRCLTYTHL-----GGSEWSLRSSESQIVIAVEGTFQTNDAVALRRAALSGLGIAMLPRF 240


>gi|73539393|ref|YP_299760.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72122730|gb|AAZ64916.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 326

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 131/295 (44%), Gaps = 14/295 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+    F  V   G+FT AAEQL   +S +S  ++ LET +G KL  R  R + LT+
Sbjct: 20  TIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTD 79

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS ++R  + ++ +L   + E         G LRIAT  + G   L G +   L  +P 
Sbjct: 80  AGSAVYRDVAPLFARLREIRQETLAREEGVQGVLRIATPYEFGAQQLGGIICRTLAAHPA 139

Query: 122 IQIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + + + +    +D   D  D A + +   +  S  + R++  +    + AP  L     P
Sbjct: 140 LDVSVEITQGLVDPIRDGFDVAFVIVDADLPDSGTVARRIYHVERGLFVAPA-LAASLPP 198

Query: 181 LSIQE--LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L+  E  ++   L T GD + +   D     ++  PI  PR+     N+ L  +Q  + G
Sbjct: 199 LARPEDLVNMPTLTTPGDTVWEFQRDGE---SITVPI-RPRMQTY--NAELR-LQGALAG 251

Query: 239 SGIALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA L  +Y   +     LVR++ D   P    +   P+      K++AF   I
Sbjct: 252 LGIAKLSVNYCEAEIAQGRLVRVLPDYPLPPLRAFALLPDRRLQPRKVRAFMEAI 306


>gi|16760210|ref|NP_455827.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142021|ref|NP_805363.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213053174|ref|ZP_03346052.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425885|ref|ZP_03358635.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213645923|ref|ZP_03375976.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213865151|ref|ZP_03387270.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829642|ref|ZP_06547185.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25319789|pir||AD0660 probable transcription regulator STY1386 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502505|emb|CAD01653.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137650|gb|AAO69212.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 301

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|293608409|ref|ZP_06690712.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828982|gb|EFF87344.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 300

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 138/299 (46%), Gaps = 33/299 (11%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +   GSF+ AA+QL++ +++ S  I  LE  +  +L  R  R +  +  G 
Sbjct: 4   FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELENNLQCRLLERTTRHVRPSLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPDI++
Sbjct: 64  AFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P   +
Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGMPQQPE 182

Query: 185 ELDKHNLITFGD-----------LIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLS 230
           +L  H  + F             ++    +D+   +W+A  D             N  LS
Sbjct: 183 DLLSHYCVNFFSTSGGRNYPFELMVNGKKQDYFLKSWIAVNDAE-----------NYVLS 231

Query: 231 IMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +Q    G+G+  +P Y V +   +  LV ++ +   P  +V   YP+  + + +++ F
Sbjct: 232 ALQ----GAGLIQVPRYHVANELKDGQLVEVLSEWEIPKMSVSALYPQHRQLSPRVRVF 286


>gi|332288198|ref|YP_004419050.1| DNA-binding transcriptional activator GcvA [Gallibacterium anatis
           UMN179]
 gi|330431094|gb|AEC16153.1| DNA-binding transcriptional activator GcvA [Gallibacterium anatis
           UMN179]
          Length = 303

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 92/188 (48%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L   + +A+SGS + AA++L +S +++S+ +  LE E+G+ L  R  R L LTE G 
Sbjct: 6   YQQLLFLHTIAQSGSISAAAKKLEISAAAVSKSLQTLEQEMGLPLILRTTRKLVLTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL + T E  + +E     L   +  PSG ++I          +Q    +F   YP+IQ+
Sbjct: 66  KLIQQTKEAVYAIEDAFESLSSDANPPSGTVKITLPQVAFYIAIQPIYAQFCQQYPNIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L ++N  +DI   Y D  IR    I+   +  +    +    + +  Y +    P SI 
Sbjct: 126 ELSINNAMVDIVDHYFDLGIRFGHSIEEGMIAHQLTAPMREGLFVSKEYAQKYGVPQSIA 185

Query: 185 ELDKHNLI 192
           +L  H  I
Sbjct: 186 DLKNHRFI 193


>gi|126734932|ref|ZP_01750678.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           CCS2]
 gi|126715487|gb|EBA12352.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           CCS2]
          Length = 292

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 126/288 (43%), Gaps = 8/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AA+QL +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAFQVARKGTVSGAADQLGVHHATVIRHIDALEQRLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +V      +       ++      SG L + T++ +   +L   L  F   +P+++
Sbjct: 63  QDLLQVAQATDDQFTQLAGRIKGQGEGVSGDL-VVTSLGMASRMLTPILVNFQAEHPEVR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++    ++   +    A  AIR     +    + +  +   M   A+  Y+     P   
Sbjct: 122 VRYRTGDRVFRLEYGEAHVAIRAGTMPEEPDNVVQPFLQQQMALVASEAYIARHGRPKDE 181

Query: 184 QELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  +T  +   K    F  WL  +   + E R    +     ++    V G+GI 
Sbjct: 182 DDLKNHVFVTHDN--DKSRAPFTRWLRDM---VSEDRF-VYRATDNRNMQDAIVAGAGIG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +    ++ +P L  ++    T S  ++      L  T K+++F  F+
Sbjct: 236 FVLAQELRMHPELTEVIPRQETWSAPLWIVTHVDLHRTAKVQSFLRFL 283


>gi|296159808|ref|ZP_06842630.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295890022|gb|EFG69818.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 214

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F   A SGSF  AA    +S     R +  LE  VG  L  R  R  +LTE G   +
Sbjct: 7   MAIFVKAAESGSFAAAALAFGISSQMAGRHVIALEERVGAPLLARTTRRQSLTEIGQIFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E  +    + S  P G+LR+   +  G   L   +  +L   P++Q+ L 
Sbjct: 67  ERCKALLADAEAAESVAMDFSASPRGRLRVTAPVTFGSCCLAPLITRYLRSNPEVQVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  + AIRL  P+  SS+I + L+   + A A+P YLK   EP + + L 
Sbjct: 127 LTDRFVDLVDEGYEVAIRL-GPLSDSSMIAKPLMPYRLLACASPAYLKERGEPRTPEALA 185

Query: 188 KHNLITF 194
           +H  + F
Sbjct: 186 RHECLGF 192


>gi|163858800|ref|YP_001633098.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262528|emb|CAP44831.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 367

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 137/293 (46%), Gaps = 18/293 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++   + R+GSF+ AA ++ ++ +++S++++ +E  +G++L  R+ R ++LT +G   
Sbjct: 69  ELQLLVELVRAGSFSAAAREMGVTTAAVSKRLAQIEDRLGVRLLNRNTRRISLTAEGELY 128

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +E     +     +P G L++   +  G++ +   + +F   YP +++QL
Sbjct: 129 LENARRILDDIEHLDQLMANRQAQPRGLLKVNAPLGFGRSYIAPAIVQFARRYPKVEVQL 188

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D   D  D AIR    I  + LI R++        AAP YLK    P + Q+L
Sbjct: 189 QLTDAPGDFVQDAFDVAIRF-GDIPDARLIARRIAPNRRLVCAAPAYLKKHGRPQTPQDL 247

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSG 240
            +H  I       +  +D   L    R  G+ R   ++V   LS       + + + G G
Sbjct: 248 ARHQCIVL-----RQNDDTYGLWRFTR--GD-RSDTVKVRGGLSSNDGEVTLTWGLAGLG 299

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I    ++ +     +  L  +++D   P   ++  +PE    + K++ F +F+
Sbjct: 300 ILQRAEWDLARYLRSGRLELLLQDYALPPADIHAVFPERNHLSAKVRVFIDFL 352


>gi|150398676|ref|YP_001329143.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150030191|gb|ABR62308.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 296

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 128/294 (43%), Gaps = 21/294 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   VA  GSF  AA++L ++ S++S  +S LE  +G++L  R  R +  TE+G +L
Sbjct: 8   QLAVLSAVAAHGSFRGAAKELGIAPSAVSHAVSSLEASLGVRLLARTTRSVAATEEGGRL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    ++    +   E+  +P+G LRI         +L   L +FL  YPDI +++
Sbjct: 68  LERLQPALDEIAHALLRAAEARDRPAGNLRITAPRFAADLILAPRLGDFLGTYPDIVLEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++   +I  +  D  IRL + +++  +  +    +     AAP Y +    P   ++L
Sbjct: 128 ANEDGFTNIVEEGYDAGIRLGESLEADMIAVKVGPELKSAVVAAPSYFERFPTPRHPRDL 187

Query: 187 DKHNLI----TFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             H  I    + G +      K  E+     +    +GE R           I+   + G
Sbjct: 188 AAHRCIRRRFSNGTIYRWEFEKGGEELTVSVSGPLILGEDR----------PIITAALGG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +G+A L +  V        L+R++ED   P    +  YP        L+AF +F
Sbjct: 238 AGLAYLFEPRVSALLVEGRLIRVLEDWCAPYAGPFLYYPTRRLMRPALRAFIDF 291


>gi|254248618|ref|ZP_04941938.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124875119|gb|EAY65109.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 319

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 119/253 (47%), Gaps = 7/253 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  + G TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVANTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +   ++  KL    +  YA   YL N    
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATHDYLANHAPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +       N L  +DR +     + L+  S ++ +   + G G
Sbjct: 190 TCTDDLARHAFISYVDDLAFS----NELLYLDRAV-PGATAGLRTTSVIAQVFAALQGGG 244

Query: 241 IALLPDYIVKDNP 253
           +A+LP ++    P
Sbjct: 245 LAILPCFMAATQP 257


>gi|107024131|ref|YP_622458.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116688543|ref|YP_834166.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105894320|gb|ABF77485.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116646632|gb|ABK07273.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 305

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 128/305 (41%), Gaps = 35/305 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G  
Sbjct: 10  NALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGRD 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + ++      +  S    SG L ++ T       L   L +F    PD+ +Q
Sbjct: 70  YLPPVRNAFRQIADASQRV--SGAADSGVLTVSVTPFFASAWLVPRLAQFRQACPDVDLQ 127

Query: 126 LILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  +   D + D  D AIR  L + I    L   +L+T+ + A A+P  +     P + 
Sbjct: 128 VLTSHALADFARDGVDVAIRHGLGRYI---GLCSERLLTVEIVALASPGLVARLGMPATP 184

Query: 184 QEL----------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            EL           K   I FG    + ++DF          G PR      +  L  +Q
Sbjct: 185 AELVGWPQLHDAERKGWHIWFGA---QRIDDF----------GPPRGPAFDDSGLL--LQ 229

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V G G  LLP  +V+    +  LV++ +      F  Y  YP       K+ AFR +I
Sbjct: 230 AIVAGQGAGLLPAAMVRGELASGRLVQLADVAWLDDFAYYLVYPPHHAERPKVAAFRRWI 289

Query: 291 FLKAR 295
              A+
Sbjct: 290 LDAAQ 294


>gi|304410195|ref|ZP_07391814.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307302094|ref|ZP_07581852.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304351604|gb|EFM16003.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306914132|gb|EFN44553.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 314

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 132/290 (45%), Gaps = 28/290 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT  G +
Sbjct: 5   EAAKVFVTIVERGSMVSAANALDMSRSMVTRYLSEMEEWSGARLLHRSTRSLSLTPAGEQ 64

Query: 66  L----HRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +    HR+      +L      +  +SV  P G LRI+ +  L   +L   + ++L  YP
Sbjct: 65  VLDYCHRLL-----ELANEVPAVSHASVAIPRGLLRISCSQFLAHQILAPVVHQYLASYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              + + + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      
Sbjct: 120 QASVNIHVSSQTVDLVAERIDLAIRITNELD-PNLIARRLGECESVVCAAPSYLAARAAV 178

Query: 181 LSIQELDKHNLIT---FGDLI---------PKCMEDFNWLATVD--RPIGEPRISCLQVN 226
           L  ++L +HN +T   FGD++          K  +  N   T++  +    P       N
Sbjct: 179 LHPEDLTQHNCLTYSYFGDVMWRFYQTDVAAKQAQALNSDLTLNQGQAFNVPVNGNFSAN 238

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
             + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y
Sbjct: 239 DSMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVY 288


>gi|260222552|emb|CBA32228.1| hypothetical protein Csp_D31080 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 298

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 1/192 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D + +F  +A+ G+ + AA + ++  S ++R ++ LE   G++L +R   GL+LT
Sbjct: 1   MQLQLDDVALFTRIAKLGTLSAAARERNVPVSQVTRALTRLEAACGVRLLHRTTHGLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L      +         EL      PSG +R++ +  L + ++  +L+     +P
Sbjct: 61  DEGDTLLSYGQRLLETTAELDSELSGKLSGPSGWVRVSVSPLLAECVIAPSLQGLYDRHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +  D++  D++ D  D AIR   P  S +L+ RK+       YAAP YL  C  P
Sbjct: 121 ALHLDINADDRVADMARDGIDIAIRTGSP-NSDTLVARKIGEHGRSLYAAPAYLARCGTP 179

Query: 181 LSIQELDKHNLI 192
               +L  H+LI
Sbjct: 180 QHPDDLALHHLI 191


>gi|206562601|ref|YP_002233364.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038641|emb|CAR54601.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 333

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +    SFT AA+ L +S+++ +R +  LE  +G+ L  R  R L  T +G   +
Sbjct: 8   MRIFTRIVEMNSFTRAAQALGISRATATRTVQELEAALGMPLLVRTTRALRPTPEGDAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   ++  +  ++ +++ PSG LR+     +   ++   L EF   +PD+++ L 
Sbjct: 68  RRCVSITADVDELEASIRGAALHPSGPLRVELPASVAGAIVLPALGEFHSRHPDLELMLA 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  +  D   D  DC++RL   +  SSL+ R+L  +     A+P YL     P +  +L 
Sbjct: 128 VAGRAGDRIGDAIDCSVRL-GALPDSSLVARRLGALERVTCASPAYLDLFGVPRTPDDLG 186

Query: 188 KHNLI 192
            H  I
Sbjct: 187 AHRAI 191


>gi|170698978|ref|ZP_02890036.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136085|gb|EDT04355.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 310

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 11/256 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE++V  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLESKVATRLFERSTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     +GK+R+++T D G+N L   L EF  L+P +   L 
Sbjct: 67  NCCRQALQALDDAHALLQEGRNVVAGKVRLSSTSDFGRNQLLDWLDEFTTLHPGVTFSLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R+L        AAP +++    P      D
Sbjct: 127 ASDSASNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFVERHGVP-----AD 180

Query: 188 KHNLITFG-DLIPKCMEDFN-WLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIA 242
            H+L +F  ++I       N W  T    +     P  +  + N      ++ + G GIA
Sbjct: 181 PHDLASFPCNVITIASGPMNTWRFTRGDEVQTHTVPVSTAFETNDGGLTREWTLRGHGIA 240

Query: 243 LLPDYIVKDNPNLVRI 258
           L   + + D+    R+
Sbjct: 241 LKSLWDIADDVRAGRL 256


>gi|91790917|ref|YP_551868.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91700797|gb|ABE46970.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 304

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 10/189 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RV    AR G+ T AA    L +         LE ++G +LF R  R + +T+QG  
Sbjct: 7   EDIRVLVETARCGTLTAAAASAMLKR---------LEAQLGARLFERSTRAMRITQQGQT 57

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +     LE  + +L   S    G +R+A   DL +++L     +F+  +P +++ 
Sbjct: 58  LLDYATRALELLEEGEAQLSSDSRSLMGTVRVAAPSDLTRSVLLPWFDDFISAHPGVRLA 117

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++  D+  D  D A+R  + +  S L+ R L T      A+P YLK    PL+ Q+
Sbjct: 118 LTVTDRVQDVIRDTVDLALRYGE-LSDSRLVARSLFTTRRVLCASPAYLKCHAAPLTPQQ 176

Query: 186 LDKHNLITF 194
           L +HN +TF
Sbjct: 177 LGQHNCLTF 185


>gi|89053252|ref|YP_508703.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88862801|gb|ABD53678.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 306

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 136/295 (46%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VA+ G+ + AAE L +  +++ R I  LE  +G KLF RHARG T TE G
Sbjct: 17  NWDEVRTAFQVAKVGTVSGAAEALGVHHATVIRHIDALEARLGAKLFQRHARGYTATEAG 76

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L  V  +   +       ++    + +G+L I T++     LL   +  F   +PD++
Sbjct: 77  QDLLSVAGQTDDQFTQLAGRIKGRGDEVTGEL-IVTSLGALSPLLVPTIALFQERHPDLR 135

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++L+ D +   +    A  AIR  K P Q  +++Q    T  +   A+  Y+    + L+
Sbjct: 136 VRLVSDARLFRLEYGEAHVAIRAGKLPDQPDNIVQ-PFFTQTLRLVASQSYIDRFGQ-LT 193

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + ++ H  +   +  P+    F WL   +  +    I   + +S +++ +  + G GI 
Sbjct: 194 GENVEAHRFVGSTEETPRAPY-FKWL---NETVPSSTI-YFRASSMVAVKEAVLAGIGIG 248

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            +  +      +LV ++  +   +  ++      L  T K++ F   +  + + W
Sbjct: 249 FVASWDRDRTDDLVEVLPPLEDWTAKIWLVTHMDLHRTAKVQTFVKHLKDQVKTW 303


>gi|16765020|ref|NP_460635.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167993714|ref|ZP_02574807.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|197264896|ref|ZP_03164970.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|16420204|gb|AAL20594.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|197243151|gb|EDY25771.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205328254|gb|EDZ15018.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261246867|emb|CBG24684.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993608|gb|ACY88493.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158203|emb|CBW17702.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912668|dbj|BAJ36642.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224304|gb|EFX49367.1| LysR family transcriptional regulator YcjZ [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323129945|gb|ADX17375.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988562|gb|AEF07545.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 301

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTIDWFFTREGKDYAIRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|312959768|ref|ZP_07774284.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311285934|gb|EFQ64499.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 316

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 117/251 (46%), Gaps = 10/251 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    +  T  G  
Sbjct: 8   NQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDSLESSVGSRLFQRSTHAVLPTPAGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L+  + E    S  P G +R+      G+  L   + +FL +YP + + 
Sbjct: 68  FAERARRIVSELQLARAEAVSLSHAPEGLIRVDAPAAFGRRHLAPVIADFLNVYPGLDVH 127

Query: 126 LILDNKDIDIS---MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+    +   D  +R    I  + LI   L +I   A A+P YLK+   P  
Sbjct: 128 LHLIDSFVDMQGAHLGKVDLVLRAGH-IVDTRLIATPLASIVRIACASPAYLKSRGTPTH 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +EL  H+ + +  L P     F W   +D  R    P+   +  N+  +++   + G G
Sbjct: 187 PRELSDHDGLDWDGLAPM----FAWRFEMDGRRATYRPQRIRMSANNAEALLCGALAGLG 242

Query: 241 IALLPDYIVKD 251
           IA LP ++  +
Sbjct: 243 IAHLPTWLASE 253


>gi|218547680|ref|YP_002381471.1| DNA-binding transcriptional activator GcvA [Escherichia fergusonii
           ATCC 35469]
 gi|218355221|emb|CAQ87828.1| DNA-binding transcriptional dual regulator [Escherichia fergusonii
           ATCC 35469]
 gi|324111208|gb|EGC05191.1| LysR substrate binding domain-containing protein [Escherichia
           fergusonii B253]
 gi|325496156|gb|EGC94015.1| DNA-binding transcriptional activator GcvA [Escherichia fergusonii
           ECD227]
          Length = 305

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 131/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++ +L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIQWLVPRLSSFNTAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGDKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTL-----LHDASRRDWQ---TYIRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILEKA 292


>gi|121603442|ref|YP_980771.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120592411|gb|ABM35850.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 347

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 128/273 (46%), Gaps = 13/273 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR F  VAR  +F  A+E+L L+QS++SRQI  LE +VG+ LF RH R + LT  G++L
Sbjct: 39  QLRAFEAVARHLNFRAASEELSLTQSAVSRQIQSLEEDVGVSLFLRHTRAVELTSAGAQL 98

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R       +++     +++S+ + S  + I+T        L   L+ F   +PDI I++
Sbjct: 99  LRAVLPSLERIDGVVRMIRQSAGRKS--VAISTWASFASMWLIPRLEAFQREHPDIDIRI 156

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+     D A+R   P  S     R+L    +    +P  LK+     + Q+L
Sbjct: 157 DATDTPVDLETTDVDLALRYSMPA-SVPAQARRLFGEQLTPVISPWLLKSGPRLQNAQDL 215

Query: 187 DKHNLITFGDL-IPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGI 241
            +  L+   D    + ME  +W    D   G    EP+   L  N    I Q  + G G+
Sbjct: 216 ARFALVEASDAHRTQHMEWLSWQRWFDM-QGLRRFEPK-RWLYFNYAHQIAQAALTGQGV 273

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYF 271
           AL    ++ +   + +LV ++ D    S   Y+
Sbjct: 274 ALARMPLIAESLASGDLVEVLPDRRMDSPMAYW 306


>gi|66044297|ref|YP_234138.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255004|gb|AAY36100.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 332

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 23  NMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 82

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 83  LLRCEQILASVEEAEAEASDAHARPAGQLKMHSMPGVGQHYVIDAIARYRRNHPDVAFDL 142

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K         +L
Sbjct: 143 TMTHRVPDLLEEGYDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAHKPADL 202

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+        WL   D P G+  +    S L VNS  ++      G G+ 
Sbjct: 203 LNHACLR---LVSPVFPLDKWL--FDGPEGQEMVTINSSPLLVNSADAMKTAISSGMGVG 257

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y   +   N  LVR++ D  +    +Y  YP            R ++  K R W
Sbjct: 258 ILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPS-----------RQYLDAKIRTW 304


>gi|325272792|ref|ZP_08139134.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324102073|gb|EGB99577.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 298

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 128/298 (42%), Gaps = 13/298 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V    SF  AA +L +S ++++R +S LE ++G+KL  R  R + LTE G +  
Sbjct: 7   MKVFVAVGELESFAAAARRLAISPAAVTRAVSALEEQLGVKLLLRTTRSVRLTEAGGRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +   +          +  P G L +   I  G+  +  ++  +L  YP + +   
Sbjct: 67  EDTRHILASIHEANEAAAGINATPKGDLAVTAPILFGRKFVMPSIVRYLQQYPQVDVAAY 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D A+R+  P+  S L   ++  +     AAP YL     P    +L 
Sbjct: 127 FLDRVVNLVEEGMDVAVRI-GPLPDSGLKALRVGQVRRMLCAAPDYLARHGVPRHPSDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H +I   +L P+    F      D P     +PR   L V S    +     G GIA L
Sbjct: 186 GHAVIGTTNLSPRAGWRFG---VTDEPTLVRMKPR---LTVTSNDGAIAAACGGLGIARL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             Y V D   +  L  I+ +     + ++  + E+   + K++ F + +    RD + 
Sbjct: 240 LSYQVADELASGQLQVILAEYEEAPWPIHILHRESKYGSAKVRTFIDMLAQALRDQQL 297


>gi|329891190|ref|ZP_08269533.1| glycine cleavage system transcriptional activator [Brevundimonas
           diminuta ATCC 11568]
 gi|328846491|gb|EGF96055.1| glycine cleavage system transcriptional activator [Brevundimonas
           diminuta ATCC 11568]
          Length = 313

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 144/302 (47%), Gaps = 26/302 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR GSF  AAE+L ++  ++SR +  LE  +G++LF R  R + LT  G +L 
Sbjct: 13  LRAFDAAARLGSFREAAEELGVTPGAVSRHVKALEMRLGLRLFDRFNRSVRLTADGKRLA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKP--SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +  ++ + +LE+        +V+P  S +LRI     L    L   L  F    PD+ + 
Sbjct: 73  QGVADAFERLESAL-----EAVRPGRSRQLRITALPSLASKWLSPRLHRFSEENPDLDLI 127

Query: 126 LILDNKDIDISMDYADCAIRLRK---PIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +++  D+S   AD A+R  +   P Q +  L+  +L+ +   ++AA   L    + L
Sbjct: 128 VFAEDRIADLSNGEADVALRYGEGPYPGQVARRLVNERLIPVCAPSFAAARRLNQPSDLL 187

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQ----VNSYLSIMQYCV 236
            +  + +    T+ D+     +   W A  +   + +PR++ L+     +S+L+ ++  +
Sbjct: 188 DVVLIHE----TWHDM--PYADRMGWKAWFESAGVDDPRVNHLRGPHFSHSHLA-LEAAL 240

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+AL    +  D+     L++ ++  +T     +        +  KL+ F N+I  +
Sbjct: 241 SGRGVALTSAPLAADDLREGRLIQPVDHALTNDLAYWAVVLPERADEPKLRRFLNWIVAE 300

Query: 294 AR 295
           +R
Sbjct: 301 SR 302


>gi|298682305|gb|ADI95367.1| transcriptional regulator protein [Pseudomonas putida]
          Length = 254

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F     +GSF+ A + LH+S   + + ++ LE  +G++L  R  R  +LT+ G 
Sbjct: 4   FTSMQAFVKAVETGSFSAAGKVLHMSAQLVGKHVNSLEERLGVRLLTRTTRTHSLTDFGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     + H +E  +     +   P+G+L+I   +  G + L   L EF+  YP + I
Sbjct: 64  SFYARAKLILHDVEEAENLAAVALASPNGRLKINAPVSFGMHALAPVLPEFMKAYPQVNI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+ +D+  +  D   R+ + +  S LI R L    +   A+P YL+    P +  
Sbjct: 124 ELNLSNRAVDLIDEGYDVIFRVGR-LADSGLIARVLAPYQLVLCASPDYLQAHGAPSTPD 182

Query: 185 ELDKHNLITF 194
           +L  H  + F
Sbjct: 183 DLRHHECLGF 192


>gi|258620748|ref|ZP_05715783.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258586946|gb|EEW11660.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 310

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 15/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G  
Sbjct: 5   NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRNIRLTHEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T      L+    ++  +  + +G+L I+   DLG+NLL   ++EF+ L+P++ ++
Sbjct: 65  FLAKTQSAIATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIEEFIALHPNVMVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+  +  D AIR  KP  S+ +      +      A+P YL      L   +
Sbjct: 125 LELSDSLTDMYTNPVDIAIRYGKPADSNLVAMLLCDSNERVLCASPDYLATHPPILHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + +  ++   + +  W+ + D   GE     +Q N   +    + +  V G GI
Sbjct: 185 LLHHNCLCY--MVSDTLHN-KWILSRD---GETHSVVVQGNPACNDGEVVHRLAVKGKGI 238

Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A   L D I +D  +  LVRI+ +  +    +Y    +    T  ++AF+ +I  K 
Sbjct: 239 ANKSLMD-ISQDIIDGRLVRILPEWESGPVPIYLVCADRRLITPTIRAFQEYIRGKG 294


>gi|218674394|ref|ZP_03524063.1| LysR family transcriptional regulator [Rhizobium etli GR56]
          Length = 251

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 7/251 (2%)

Query: 46  GIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ 105
           GIKL  R  R  +LT+ G   +     +  ++E  +  + E+   P G+LRI+  I  G 
Sbjct: 1   GIKLLNRTTRRQSLTDSGRIFYEHAKNILAEMEAAEALIAETRSIPRGRLRISAPITFGS 60

Query: 106 NLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM 165
           + L   L E+L  +P++ + L L N+ +D+  +  D A R  + +  S L+ R L  + +
Sbjct: 61  HALAPELPEYLKQHPEVSLDLSLTNRTVDLVEEGFDVAFRTGE-LPDSRLLARGLSPLRL 119

Query: 166 HAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV 225
              AAP YLK+  +    ++L +H  + F     +    F     +   +  P       
Sbjct: 120 VLCAAPAYLKSAEKLNRPEDLQRHECLVFSHTSLRTQWSFEGPHGL---VSVPITGRFST 176

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           +S  ++    V G G+ L P  +V    +   LVR++ D   P+  ++  Y    + T K
Sbjct: 177 DSGEALRAAAVAGMGVLLQPHELVVREIEAGRLVRLLPDYEPPARPLHALYAPDRRMTPK 236

Query: 283 LKAFRNFIFLK 293
           L++F +F   K
Sbjct: 237 LRSFIDFALKK 247


>gi|126726343|ref|ZP_01742184.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126704206|gb|EBA03298.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 299

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 128/290 (44%), Gaps = 21/290 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD LR+F  VAR  S + A +Q+ L  ++I R+I  LE  +G  LF +  +G  LT+ G
Sbjct: 3   NWDDLRIFLAVARFESLSAAGKQISLDPATIGRRIQRLEETIGAVLFVKSPQGYQLTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKP------SGKLRIATTIDLGQNLLQGNLKEFLL 117
            +L      + H  +  Q  L  S V        +G +RI         +L         
Sbjct: 63  LRL------MEHAGQAEQAFLAASDVSQTEFEGLTGSIRIGAPDGCANFILPAVCGRIAD 116

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P ++IQ++   +  ++S   AD AI +  P  S  L  +K+V   +H  A   YLK  
Sbjct: 117 ENPGLEIQIVSLPRVFNLSKREADMAIAVSPPT-SGRLSVQKIVDYKLHLAAQADYLKQA 175

Query: 178 REPLSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            E   +Q+L +H +I +  D+I     D+     ++RP        +Q NS  +      
Sbjct: 176 AELNDLQDLKQHRVIGYIPDMIFDSELDYLTKIGIERPELASNSVSVQFNSINA------ 229

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G G+ ++ D+ +    N+ R++ D ++ S + Y    E  +   +   F
Sbjct: 230 -GIGVGIMHDFALPFAQNVRRLLMDQLSLSRSFYLIRHEDDRKVARFNRF 278


>gi|254246457|ref|ZP_04939778.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124871233|gb|EAY62949.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 305

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 128/305 (41%), Gaps = 35/305 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G  
Sbjct: 10  NALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGRD 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + ++      +  S    SG L ++ T       L   L +F    PD+ +Q
Sbjct: 70  YLPPVRNAFRQIADASQRV--SGAADSGVLTVSVTPFFASAWLVPRLAQFRQACPDVDLQ 127

Query: 126 LILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  +   D + D  D AIR  L + I    L   +L+T+ + A A+P  +     P + 
Sbjct: 128 VLTSHALADFARDGVDVAIRHGLGRYI---GLCSERLLTVEIVALASPDLVARLGMPATP 184

Query: 184 QEL----------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            EL           K   I FG    + ++DF          G PR      +  L  +Q
Sbjct: 185 AELVGWPQLHDAERKGWHIWFGA---QRIDDF----------GPPRGPAFDDSGLL--LQ 229

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V G G  LLP  +V+    +  LV++ +      F  Y  YP       K+ AFR +I
Sbjct: 230 AIVAGQGAGLLPAAMVRGELASGRLVQLADVAWLDDFAYYLVYPPHHAERPKVAAFRRWI 289

Query: 291 FLKAR 295
              A+
Sbjct: 290 LDAAQ 294


>gi|170729122|ref|YP_001763148.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169814469|gb|ACA89053.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 289

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 144/289 (49%), Gaps = 12/289 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++ ++F ++   GS    A+ L++S S++S++++ LE+++G++L  R  R + +TE G 
Sbjct: 4   FERAQLFKLIVELGSMVATAKALNISPSAVSKRLAELESQLGVQLLKRSTRSIVITEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   E+  + ++   E       PSG+L +A    +   +L   L  F   +P+I++
Sbjct: 64  HFYQEVRELSGRWQSLVDETATLGESPSGRLTVAAPAPVLSRVLMPMLPGFNANFPEIKL 123

Query: 125 QLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L+  + D D+ +  AD ++ R  +   S + +   L       +A+P Y+     P  +
Sbjct: 124 ELLSVDYD-DLPLRSADISLARHIEAFDSGTFVGVPLCEYRNGLFASPEYINKHGSPHKV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H+ + +G       E+ ++L  +     E +   +  N+ + I+Q  V G GIA 
Sbjct: 183 EELVQHSCLCYGK------ENRSYLWCLGEESVEVKGRLVSDNTEV-IIQAAVQGMGIAY 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +P  I++       L+ ++  V +  F+++  Y +      K +AF ++
Sbjct: 236 IPRMIIERELACGELMSVLTYVESQRFSMWGYYQQLAYLPAKTRAFIDY 284


>gi|104779941|ref|YP_606439.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95108928|emb|CAK13624.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 316

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 9/291 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+I  LE  +G  LF +    G  LT
Sbjct: 10  ALNWDDLKFFLEVARTRKASSAAKRLAVDYTTVSRRIGSLEGALGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  +P
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFVTPQLSHFVDAWP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL    EP
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQDYLDR-HEP 187

Query: 181 L-SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  I +L +H  I++ D +    E   +LA +         S   +  Y + +Q    G 
Sbjct: 188 IREIGDLMRHPFISYVDDLAFSSE-LLYLANLIPNANAHLRSTSVIAQYTAALQ----GR 242

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A+LP ++   +P LV ++ + I  +   +    E L+   ++    ++I
Sbjct: 243 GLAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 293


>gi|23501257|ref|NP_697384.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|23347142|gb|AAN29299.1| transcriptional regulator, LysR family [Brucella suis 1330]
          Length = 304

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 99/194 (51%), Gaps = 4/194 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S + +S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVVSNRIKELEKNLGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 60  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 120 DIEVRLRLSDHEVDIMSEGVDVAFKL-GVLENSNLRMRGIMNCERVVCAAPQYLERHGTP 178

Query: 181 LSIQEL--DKHNLI 192
            S + L  D+H+ +
Sbjct: 179 QSPEALLSDRHHCL 192


>gi|290510729|ref|ZP_06550099.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
 gi|289777445|gb|EFD85443.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
          Length = 320

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 141/291 (48%), Gaps = 13/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F  AAE+L +S + +S+++S LE  + + L +R  R +T+TE+G +
Sbjct: 15  NDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVVLLHRTTRRVTITEEGER 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    EL +    P G LRI ++   G+ ++   L    L YP ++++
Sbjct: 75  IYEWAQRILQDVDEMMDELSDVRQVPQGTLRIISSFGFGRRVVAPALSALALQYPQLELR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + ++ +D+  +  D  IR+   I + +LI R+L   H    A+P +L   R P   Q 
Sbjct: 135 FDVQDRLVDLVNEGVDLDIRVGDDI-APNLIARQLAANHRVLCASPQFL--ARHPPPKQL 191

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
            D   L     L+ K  +    +  +    G+  I     L  N    + Q+C+ G GIA
Sbjct: 192 SD---LAALPCLVIKERDHPFGIWQLHSKEGQHAIKVTGPLSSNHGEIVHQWCLDGQGIA 248

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   + V++N    +LV ++ +   P+  V+  Y   L  + K++    F+
Sbjct: 249 LRSWWDVRENIASGHLVHVLPEFFQPA-NVWAVYVSRLATSAKIRTTVEFL 298


>gi|254255142|ref|ZP_04948458.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124900879|gb|EAY71629.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 315

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 135/299 (45%), Gaps = 14/299 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS D    +R+F  VA  GSFT AA++L ++ +  SR ++ LE  +  +L  R  R + L
Sbjct: 1   MSMDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLEAHLRTRLLNRSTRRIAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G +       +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   Y
Sbjct: 61  TDAGQRYLDRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P + ++L L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK   
Sbjct: 121 PSVAVELTLSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGEVHSVLCASPAYLKERG 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQY 234
            P ++++L+ H  +    + P    D  W   +D P G    E  +   QVN   ++   
Sbjct: 181 TPRTVRDLEGHACLQI--VTPIFPRD-RW--HLDGPDGRETFELPLPDFQVNLAEALGAA 235

Query: 235 CVLGSGIALLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              G GI  +P         +  LVR++ +      TVY  Y        K++ F +F+
Sbjct: 236 LRAGVGIGAVPMSTALPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFL 294


>gi|194366909|ref|YP_002029519.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349713|gb|ACF52836.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 287

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 113/241 (46%), Gaps = 14/241 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT AA +L +SQ+++S QI GLE  +GI+LF+R  RG+ LTE+G+ 
Sbjct: 9   NALRAFEAAARHQNFTRAALELCVSQAALSHQIRGLEDRLGIRLFHRLPRGVALTEEGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+ V +E + ++  +         +    L +  T   G   L   L  F   +PDI+++
Sbjct: 69  LYPVLNESFERISASIARYTGGPAREVLTLGVVGTFATG--WLLPRLAAFEAAHPDIELR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N  ID++ +  D AIR           Q +  T  + A  AP     C   L+ + 
Sbjct: 127 LQTHNNRIDLAGEGLDLAIRF-----GDGDWQGQACTAILDAPFAPL----CAPALARRL 177

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
               +L T   L     +++  WL        E R      +S L++    V G+G+ALL
Sbjct: 178 KQPRDLGTLPLLRSYRSDEWPRWLQAAGVSGVEARGPVF--DSSLTVAMAAVGGAGVALL 235

Query: 245 P 245
           P
Sbjct: 236 P 236


>gi|85710490|ref|ZP_01041554.1| transcriptional regulator, LysR family protein [Erythrobacter sp.
           NAP1]
 gi|85687668|gb|EAQ27673.1| transcriptional regulator, LysR family protein [Erythrobacter sp.
           NAP1]
          Length = 295

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 128/294 (43%), Gaps = 14/294 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VAR  SF  A  +++ S ++++R ++ LE  +G  LF R  R + LTE G +  
Sbjct: 1   MKVFLEVARRQSFAAAGREMNASPATVTRTVAALEEMIGADLFVRTTRTVRLTEAGERYA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++           +P G L I   +  G+  +   + EF  LYPD+ +QL+
Sbjct: 61  PECERILAEIDAADALAAGVQAQPVGLLAITAPVLFGRLYIAPIVTEFCDLYPDVSVQLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  ++  +  D A+R+   ++ SSL   ++  +      +  YL+    P S Q+L 
Sbjct: 121 LLDRVTNMVDEGFDIALRIGH-LRDSSLKAAQVGHVRRVVTGSAAYLRRNGVPQSPQDLK 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H ++     +       +W    D        P+I C   N+  + +     G G+  +
Sbjct: 180 SHKIVA----VSSGFSGVDWRFGKDEKAVVRVHPQILC---NNNAAAIGMAADGWGLTRV 232

Query: 245 PDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y V    N  R   ++ED    S  V+  +        K++AF +F   + R
Sbjct: 233 LSYQVGPEVNAGRLRLVLEDYEEASLPVHIVHGGTRNTAAKVRAFVDFAVERLR 286


>gi|259909480|ref|YP_002649836.1| DNA-binding transcriptional activator GcvA [Erwinia pyrifoliae
           Ep1/96]
 gi|224965102|emb|CAX56634.1| Glycine cleavage system transcriptional activator [Erwinia
           pyrifoliae Ep1/96]
 gi|283479553|emb|CAY75469.1| Carbapenem-hydrolyzing beta-lactamase transcriptional activator
           [Erwinia pyrifoliae DSM 12163]
 gi|310766613|gb|ADP11563.1| DNA-binding transcriptional activator GcvA [Erwinia sp. Ejp617]
          Length = 305

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F L YP I ++
Sbjct: 69  YYLDIKEIFTALNDATRKLQARSAK--GALTVSLLPSFAIQWLVPRLTSFNLTYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++D +   D  D AI   R   P     L   KL   ++    +P  L       S
Sbjct: 127 IQAVDRDEEKLADDVDVAIFYGRGNWP----GLRAEKLYAEYLLPVCSPLLLTGAHPLTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLG 238
              L  H L     L      D+    +  R +G   I+ +Q     S    ++Q  + G
Sbjct: 183 PAALAHHTL-----LHDASRRDWQ---SYTRQLGLNTIN-VQHGPIFSHSAMVLQAAIHG 233

Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 234 QGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|167561360|ref|ZP_02354276.1| glycine cleavage system transcriptional activator [Burkholderia
           oklahomensis EO147]
          Length = 312

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 135/289 (46%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + LTLT+ G +
Sbjct: 3   NALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLTLTDAGGR 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        +     +++ S      +L ++T        +   +  F+  +P+I ++
Sbjct: 63  YAQQVRAALTLIADATRDIRASDR--DKRLIVSTLPSFAARWITPRIGPFIERHPEIDLE 120

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 121 LRASDALVDFARDDVDVAIRFGYGVYPGLYVE-PLLDETFFPVCAP-TLNGGVLPETPAD 178

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 179 LARYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 233

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +     +  RI+   D+  PS +  +F  P +L  T +++AFR ++ 
Sbjct: 234 RSLAVPELSAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLL 282


>gi|146293789|ref|YP_001184213.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145565479|gb|ABP76414.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 337

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G  
Sbjct: 30  EPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGHL 89

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++Q
Sbjct: 90  LYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMAKHPELELQ 149

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   ++
Sbjct: 150 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLVASPDYVAKHGEPTRPEQ 208

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  L
Sbjct: 209 LVDHNCLVYQG---EWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVYL 265

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV ++ED  +T    +   YP       K+ AF  FI
Sbjct: 266 ASYLMEDEITKGTLVPLLEDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFI 315


>gi|269125373|ref|YP_003298743.1| LysR family transcriptional regulator [Thermomonospora curvata DSM
           43183]
 gi|268310331|gb|ACY96705.1| transcriptional regulator, LysR family [Thermomonospora curvata DSM
           43183]
          Length = 350

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 127/272 (46%), Gaps = 27/272 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
               +L  F  VA    FTHAAE L ++Q S+S+QI  LETE+G  LF R    +TLT  
Sbjct: 1   MQLQQLAYFVAVAEIRHFTHAAEALRVAQPSLSKQIRALETELGASLFSRARGNITLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L  +   +   ++T ++E+QE      G++R+  T  L   LL   L+ F   YP I
Sbjct: 61  GEALLPLAKRILADVDTARLEVQELVGLRRGRVRLGATPSLCAGLLADVLRRFHDTYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLR---------KPIQSSSLIQRKLVTIHMHAYAAPHY 173
           Q+ L+ +    D+       A+ L           P++++++++  LV       A+P  
Sbjct: 121 QL-LVEEGGSRDLVRQLTRGALDLALVILPLAGDAPLETTAILREHLVV------ASPAP 173

Query: 174 LKNCREPLSIQE--LDKHNLITFGDLIPKCMEDFN-----WLATVD--RPIG-EPRISCL 223
            +N   P +++   L +   +   DL  + +  F        AT+   R  G EPR + +
Sbjct: 174 RRNGSRPPAVRGALLPRRPYVRIEDLRDRPLVMFRPGYDLREATIGACRQAGFEPRFA-V 232

Query: 224 QVNSYLSIMQYCVLGSGIALLPDYIVKDNPNL 255
           +     +++++   G G+A++P  ++   P L
Sbjct: 233 EGGEMDAVLRFVEAGLGVAVVPSMVLAGRPGL 264


>gi|170736194|ref|YP_001777454.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818382|gb|ACA92964.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 310

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 131/277 (47%), Gaps = 18/277 (6%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 31  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLEYARRILDQMDELGELL 90

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YPD+ +QL L      ++ D  D  I
Sbjct: 91  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPDVSVQLQLSVMPPPLTDDAFDVCI 150

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R  +P   + ++ R+L        AAP YL     P +  +L +HN I     I +  E 
Sbjct: 151 RFGEP-PDARVVARRLAPNRRLLCAAPAYLARHGVPGTPHDLTRHNCIG----IRQGDEG 205

Query: 205 FN-WLATVDRPIGEPR-ISCLQVNSYLSI------MQYCVLGSGIALLPDYIVKD---NP 253
           +  W  T  R  G  R    +++N  L+       +++ + G GI +  ++ ++D   + 
Sbjct: 206 YGVWRLTSGR--GAARHTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDLRDYLADG 263

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LV ++ D  TPS  +Y  Y +  + + +++AF +F+
Sbjct: 264 RLVVVLPDHETPSADIYAVYAQRHQMSTRIRAFVDFL 300


>gi|33603605|ref|NP_891165.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
 gi|33577730|emb|CAE34995.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
          Length = 309

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 15/242 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V R  S T AA+ LHL+QS++SRQI  LE  +G+ L  R  R ++ T +G++
Sbjct: 12  DLVRGFVAVGRRMSITLAAQDLHLTQSAVSRQIRALEAHLGVALLSRGFRSVSFTAEGAQ 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R+       +E  ++  Q  + +    + + +TI +    L   L  F   +P I ++
Sbjct: 72  LFRMADRWL--IELGELAAQWRAPERRTPVTVTSTIGVASLWLLPRLGRFQEAHPSIDVR 129

Query: 126 LILDNKDIDISMDYADCAIRL----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  DN+ +D+  +  D AIR       P  ++ +    +V +   A             L
Sbjct: 130 VAADNRVLDLDREQVDIAIRYCPRDAAPEGAAWMFGETVVPVAHPALGVAR--------L 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+ F D     ++  +WL T       P+   L+ N Y  I+Q  + G G+
Sbjct: 182 DAAALAGQVLLEFDDPTRPWLQWADWLGTQGLGRARPK-GMLRFNQYDQIVQAALAGHGV 240

Query: 242 AL 243
           AL
Sbjct: 241 AL 242


>gi|26987997|ref|NP_743422.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|148549663|ref|YP_001269765.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|24982714|gb|AAN66886.1|AE016317_3 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
 gi|148513721|gb|ABQ80581.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
 gi|313500507|gb|ADR61873.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 315

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 133/291 (45%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA+ GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRETHPDVTFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+  D+  +  D +I L   +  S  + ++L   +    A+P Y+          +L
Sbjct: 126 TMANRVPDLLDEGYDVSIVLATELPDSGFVSQRLGITYSIVCASPAYIAQHGVAHKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
            KH  +    ++   +    WL   D P G+  +    S   VN+  ++      G G+ 
Sbjct: 186 LKHACLR---MVSPVIPLEKWL--FDGPEGQEMVNITSSPFMVNTADAMKTAIRSGMGVG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP Y   +   + +LVR++ +       +Y  YP       K+K +  ++
Sbjct: 241 VLPIYSAIEGLRDGSLVRVLPEYRLQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|325121856|gb|ADY81379.1| putative LysR family transcriptional regulator [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 300

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 136/289 (47%), Gaps = 13/289 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +   GSF+ AA+QL++ +++ S  I  LE+ +  +L  R  R +  +  G 
Sbjct: 4   FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPDI++
Sbjct: 64  AFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHQLYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P   +
Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGTPQQPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           +L  H  + F          F  +       G+ +     S + VN   + +   + G+G
Sbjct: 183 DLLSHYCVNFFSTSGGRNYPFELMVN-----GKKQDYFLKSWIAVNDAENYVLSALRGAG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  +P Y V +   +  LV ++ +   P  +V   YP+  + + +++ F
Sbjct: 238 LIQVPRYHVANELKDGQLVEVLSEWQIPKMSVSALYPQHRQLSPRVRVF 286


>gi|322836457|ref|YP_004215834.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321171010|gb|ADW76707.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 305

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 1/193 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V    SF  A++ L +  S++SR IS LE  + ++L  R  R + LT+
Sbjct: 4   ALDFNTLKVFIAVVERDSFVGASKVLEMPTSNVSRCISQLEDRLNLQLIERSTRYMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+  T  +   LE T+ EL    ++  G LRI    ++G  LL   + +F   +PD
Sbjct: 64  AGHLLYTRTKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVIADFACQHPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  + +   ++   D  D AI + R  +  S  I R LVTI     AAP  ++    P
Sbjct: 124 LEISCVTNLSGLESLRDDLDLAIIVSRGQLDDSDYIARHLVTIPCTIVAAPSVIQRYGIP 183

Query: 181 LSIQELDKHNLIT 193
             IQ+ +    IT
Sbjct: 184 SRIQQFETLPCIT 196


>gi|289676912|ref|ZP_06497802.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
          Length = 174

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 84/168 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI+
Sbjct: 67  LMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
           + +D    +I  +  D  IRL + I    +  R      +    +P Y
Sbjct: 127 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAY 174


>gi|271499482|ref|YP_003332507.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343037|gb|ACZ75802.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 308

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 130/299 (43%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++  L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSALNEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNTEYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ +   D  D AI   +      L   KL   ++    AP  L           
Sbjct: 127 IQAVDREEERLSDDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCAPQLLAG--------- 176

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238
             +H L T  DL    +       +WLA   R +G  +I+  Q    +    ++Q  + G
Sbjct: 177 --EHPLKTPADLAWHTLLHDASRRDWLAYT-RQLGIAQINVQQGPIFSHSAMVLQAAIHG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 234 QGVALANNVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|257095389|ref|YP_003169030.1| LysR family transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047913|gb|ACV37101.1| transcriptional regulator, LysR family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 306

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 124/276 (44%), Gaps = 16/276 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F   A  GS + AA    ++ + I R++  LE  +G+KL  R  R L+LT +G   
Sbjct: 6   QIQAFVDSATRGSLSAAARAESVTPAVIGRRLDALEARLGVKLLLRTTRKLSLTFEGQAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + ++L   +  +    ++ SG L+++     G+  L   +  F+   P + ++L
Sbjct: 66  LEDCQRILNELANAEAAVSLGGIRASGHLKVSAPAGFGRRHLAPLVAAFMDANPGVTVRL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+R+   +  SSL   KL  +     A+P YL     P +  +L
Sbjct: 126 DLTDRLVDLLNEGVDCAVRI-GDMADSSLASSKLGEMRRVVVASPVYLARHGVPRTPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RIS-CLQVNSYLSIMQYCVLGSGIA 242
             HN ++         +   W    + P GE    ++S   + N    +  + + G G+A
Sbjct: 185 AHHNCLSLD-------QQRGW-TLRESPAGEGANRKVSGSFECNDGAVLHAWALAGKGLA 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
               + V D+     LV +++D  T    +Y  +P+
Sbjct: 237 WRSMWEVGDDLRSGRLVSLLDDYATAPVGIYAVFPQ 272


>gi|268590548|ref|ZP_06124769.1| glycine cleavage system transcriptional activator [Providencia
           rettgeri DSM 1131]
 gi|291313935|gb|EFE54388.1| glycine cleavage system transcriptional activator [Providencia
           rettgeri DSM 1131]
          Length = 313

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 130/296 (43%), Gaps = 18/296 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S Q+  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQMKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++ +       L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSSLNEATRKLQARSAK--GALTVSLSPSFAIQWLVPRLSGFNQAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   K      L   +L   ++    +P  L    +    ++
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGKG-NWPGLRTDRLYAEYLMPVCSPSLLTGDSQLKIPED 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L KH L+             +W A V + +    +  +Q     S    ++Q  V G G+
Sbjct: 186 LAKHTLL-------HDSSRRDWQAYV-KQLELQNVVNVQQGPIFSHSAMVIQAAVHGQGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + K   D   LV    +V+      Y    E   + GK+ AFR +I  +A
Sbjct: 238 ALTNNVMAKNEIDAGRLVCPFSEVLVSKNAFYLVCQENQADLGKIAAFRQWILGQA 293


>gi|300716727|ref|YP_003741530.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299062563|emb|CAX59682.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 501

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 131/297 (44%), Gaps = 30/297 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  + S   AA+ L+L +SS+S+ +  LE  +G KL  R  R  T+T  G +  
Sbjct: 7   MRVFIRITDARSLAKAADSLNLPRSSVSKLLQDLEQHLGAKLIERSTRSFTITPLGERYR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T E+  +L+      + + V P GKLR+     L   ++   L EF   YP +++ L 
Sbjct: 67  EQTREILAQLDEMDTAARYAKVNPQGKLRVDVGSSLANEIIIPALPEFHARYPQLELLLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           ++++  D+  +  DC IR    +  SS+I R+L T+     A   YL     P+  Q++ 
Sbjct: 127 VNDRPADLIGEGVDCVIR-GGVLPDSSMIGRQLCTLDYVTCATSGYLSAHGTPVHPQDIK 185

Query: 187 DKHNLITF-----GDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           D H  + +     G  +P       ++F               + + ++   ++ +  + 
Sbjct: 186 DNHQTVRYFFPHSGKSLPLQFSNGTDEFEIHGN----------TVVNISESTALTEALLT 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKN------TGKLKA 285
           G GI  +  +  +    +  L+ ++E+   PS  V   YP  L        TG+ KA
Sbjct: 236 GMGIGQIFRFSAEHHFLSGRLIPLLEEWKQPSLPVQLVYPANLAEGAHVYITGRNKA 292


>gi|15601393|ref|NP_233024.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121585575|ref|ZP_01675371.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121725808|ref|ZP_01679108.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147672145|ref|YP_001215418.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153819775|ref|ZP_01972442.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|227812202|ref|YP_002812212.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229506200|ref|ZP_04395709.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229509942|ref|ZP_04399422.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229513175|ref|ZP_04402640.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229516497|ref|ZP_04405944.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229525993|ref|ZP_04415397.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229605739|ref|YP_002876443.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254285660|ref|ZP_04960623.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|254849795|ref|ZP_05239145.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746591|ref|ZP_05420538.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|261212406|ref|ZP_05926691.1| transcriptional regulator [Vibrio sp. RC341]
 gi|262158817|ref|ZP_06029930.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262168486|ref|ZP_06036182.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|262190215|ref|ZP_06048491.1| transcriptional regulator [Vibrio cholerae CT 5369-93]
 gi|298499440|ref|ZP_07009246.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9658049|gb|AAF96536.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121550192|gb|EAX60206.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121631573|gb|EAX63941.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|126509674|gb|EAZ72268.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|146314528|gb|ABQ19068.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|150424157|gb|EDN16095.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|227011344|gb|ACP07555.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227015302|gb|ACP11511.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|229336151|gb|EEO01169.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229346378|gb|EEO11349.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229349585|gb|EEO14540.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229352387|gb|EEO17327.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229356551|gb|EEO21469.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229372225|gb|ACQ62647.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254845500|gb|EET23914.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736345|gb|EET91743.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|260838337|gb|EEX64993.1| transcriptional regulator [Vibrio sp. RC341]
 gi|262023015|gb|EEY41720.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|262029390|gb|EEY48041.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262033912|gb|EEY52376.1| transcriptional regulator [Vibrio cholerae CT 5369-93]
 gi|297541421|gb|EFH77472.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|327485652|gb|AEA80058.1| Transcriptional regulator, LysR family [Vibrio cholerae LMA3894-4]
          Length = 313

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 15/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G  
Sbjct: 5   NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ ++
Sbjct: 65  FLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  D+  +  D AIR  +P  S+ +      +      A+P YL      L   +
Sbjct: 125 LDLSDRLTDMYANPVDIAIRYGQPADSNLVAMLLCDSNERVLCASPEYLAAHPPILHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + F  ++   + +  W+ + +   GE     +Q N   +    + +  V G GI
Sbjct: 185 LQHHNCLCF--MLADTLHN-KWILSRN---GETHSVVVQGNPACNDGEVVHRLAVKGKGI 238

Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A   L D I +D  +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K 
Sbjct: 239 ANKSLMD-ISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREKG 294


>gi|332978798|gb|EGK15485.1| LysR family transcriptional regulator [Psychrobacter sp.
           1501(2011)]
          Length = 320

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 123/274 (44%), Gaps = 12/274 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T  G +L 
Sbjct: 29  MRIFCVAAESRNFKEAATQLGISPQVVTRAIKELEEQRGEILFYRSTRQIKITADGERLA 88

Query: 68  RVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   YPDI +  
Sbjct: 89  KQARFAVGSIDALLVKDTKEKRDEMRGTVRLTVSSVLGRKLVVPALAEFATRYPDIVVDC 148

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +   D+  +  D  IR    +  +  + R+L  ++ ++   P  +     P  I +L
Sbjct: 149 VLTDLHSDVIDERIDIGIRF-GFLPDNRYVARELAKVNFYSVGTPELIDKVGMPKKIIDL 207

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           DK+ L    D   K    + W  T  R     +PR     + +     Q  + G G   +
Sbjct: 208 DKYPLTALFD--HKTGRYWPWTFTESRSFTPSKPRFITDDLEAEF---QAILAGVGFGHM 262

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           P ++V     +  L++I+ +  +P + +Y   P+
Sbjct: 263 PGFLVLPWLRSGKLIQILHEETSPVWRLYLYRPQ 296


>gi|300693979|ref|YP_003749952.1| transcription regulator, lysr family; ttua activator [Ralstonia
           solanacearum PSI07]
 gi|299076016|emb|CBJ35327.1| putative transcription regulator, LysR family; putative ttuA
           activator [Ralstonia solanacearum PSI07]
          Length = 306

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 136/294 (46%), Gaps = 16/294 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A +GS + AA  L ++  ++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 10  ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++     L ++  +P G LR+  T+  G+  +   + E++  YP + +QL
Sbjct: 70  LEHARRILGEIDDLDQLLTQAKGRPRGLLRVNATLGFGRRHIAPAISEYVRQYPGVDVQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  IR  +P   + +I RK+        A+P YL+    PL+  +L
Sbjct: 130 QLSADPPPLNEDAFDVCIRFGEP-PDARIIARKVAPNRRLLCASPDYLRRHGTPLTPGDL 188

Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239
            +HN I     I +  + +  W  T  +     R   + V   L+       + + + G 
Sbjct: 189 AQHNCIG----IRQGSDAYGVWRLTSGKGTKR-RTETIHVRGNLTTNDGEIAVNWALEGH 243

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  ++ V+       LV+++    TP   +Y  Y +  + + +++ F +F+
Sbjct: 244 GIVMRAEWDVERYLRGGELVQVLPLYATPEADIYAVYLQRHQLSPRIRLFVDFL 297


>gi|62317125|ref|YP_222978.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269112|ref|YP_418403.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus
           2308]
 gi|189022388|ref|YP_001932129.1| transcriptional regulator, LysR family [Brucella abortus S19]
 gi|254698408|ref|ZP_05160236.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254731855|ref|ZP_05190433.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 4 str. 292]
 gi|260759625|ref|ZP_05871973.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260762868|ref|ZP_05875200.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|62197318|gb|AAX75617.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82939386|emb|CAJ12339.1| Bacterial regulatory protein LysR, HTH motif:Helix-turn-helix,
           Fis-type:LysR substrate binding domain [Brucella
           melitensis biovar Abortus 2308]
 gi|189020962|gb|ACD73683.1| transcriptional regulator, LysR family [Brucella abortus S19]
 gi|260669943|gb|EEX56883.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260673289|gb|EEX60110.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
          Length = 306

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 128/287 (44%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G  L     R + LTE G   H
Sbjct: 8   MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTSLLQCTTRQIALTEAGQGYH 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 68  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P +I++L 
Sbjct: 128 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP G      LQ NS   + +  + G GIA    +
Sbjct: 187 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 240

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 241 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|254248946|ref|ZP_04942266.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875447|gb|EAY65437.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 306

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 131/277 (47%), Gaps = 18/277 (6%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLEYARRILDQMDELGELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YPD+ +QL L      ++ D  D  I
Sbjct: 87  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPDVSVQLQLSVMPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R  +P   + ++ R+L        AAP YL     P +  +L +HN I     I +  E 
Sbjct: 147 RFGEP-PDARVVARRLAPNRRLLCAAPAYLARHGVPGTPHDLTRHNCIG----IRQGDEG 201

Query: 205 FN-WLATVDRPIGEPR-ISCLQVNSYLSI------MQYCVLGSGIALLPDYIVKD---NP 253
           +  W  T  R  G  R    +++N  L+       +++ + G GI +  ++ ++D   + 
Sbjct: 202 YGVWRLTSGR--GAARHTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDLRDYLADG 259

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LV ++ D  TPS  +Y  Y +  + + +++AF +F+
Sbjct: 260 RLVVVLPDHETPSADIYAVYAQRHQMSTRIRAFVDFL 296


>gi|304409856|ref|ZP_07391475.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307307856|ref|ZP_07587583.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304351265|gb|EFM15664.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306910046|gb|EFN40485.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 304

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 117/262 (44%), Gaps = 16/262 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  V  S S++  A +  +S S ISR IS LE  +G +LFYR+ R +  TE G    
Sbjct: 4   LKFFIGVYDSKSYSVVARKEGVSPSMISRVISQLEDSLGQQLFYRNTRAIIPTESGRIFI 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L   + EL + +++P G +RI   +  GQ  +   L  FL  YP +Q++L 
Sbjct: 64  EYARSMAEQLNEVRNELLDRTIEPKGLIRINAPVFFGQRHIAPWLAGFLTRYPQVQVELT 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  ID  +  AD   R+   +  SSL  R L +   H  A+  Y+     P    +L 
Sbjct: 124 QTDDYIDPHVSAADIIFRIGT-LVDSSLHSRILGSQTYHLAASKAYIALHGMPTEPADLK 182

Query: 188 KHNLITFGDLIPKCMEDFN-----WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H  + +     +    FN     WL        +P    L  N+  +++   +   GI 
Sbjct: 183 NHQCLVYSGSSGQNRWFFNKNKTTWLH-------QPITPILTSNNAETLLIAALNDMGIV 235

Query: 243 LLPDYIVKD---NPNLVRIMED 261
           L PD+++ D   N  L+ ++ D
Sbjct: 236 LFPDWLIGDSLKNGQLISLLTD 257


>gi|226363910|ref|YP_002781692.1| LysR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242399|dbj|BAH52747.1| putative LysR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 303

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 10/260 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR    VAR+G    AA  L +  +++SR++  LE  +G++L  R   G  LT+ G  
Sbjct: 10  DDLRYLLAVARTGRRQSAAMDLGVDHTTVSRRVRALEKVLGVRLLQRSTDGWELTDVGRS 69

Query: 66  LHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      +   + E   + L  S     G +RI      G   +   L +  + +P + +
Sbjct: 70  IAEKAQLIEEAVQEAADVVLGISENPLRGTVRITAPDGFGSLFVAPALAKLRMNHPHLVV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI D + +++     D A+ +  PI +S L+  ++    +  Y +  Y ++  EP SI+
Sbjct: 130 ELITDTRQLNLYQSGFDLAVAVGTPI-TSRLVSERVCQYSLGLYGSEQYFRDHGEPGSIE 188

Query: 185 ELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H L+ F D + +  + D N       P    +     + ++++  +    G GI L
Sbjct: 189 ELTAHPLVFFVDSLLQVGDLDLNR----HLPGVAAKFMSTNIFAHVAATRS---GGGIGL 241

Query: 244 LPDYIVKDNPNLVRIMEDVI 263
           LP ++   + +L RI+ DV+
Sbjct: 242 LPAFMADQHADLRRILPDVV 261


>gi|187922116|ref|YP_001893758.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713310|gb|ACD14534.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 306

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 1/188 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V R G F+ AA  L L+ S ++ +++GLE  +G+ L  R  R  +LTE G   
Sbjct: 6   EMEIFVEVVRQGGFSAAARSLSLASSVVADRVAGLEKRLGVPLLLRTTRRQSLTEAGEDY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  S + + + T +  + ES+    G L +     LG   +   +  F   YPD+  QL
Sbjct: 66  FQEASRIINDVRTLESRIVESATAVRGTLHVTAPNPLGLRWIAPFVGRFAASYPDMATQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD+   DI     D AIR   P   ++LI   L        A+P YL +   P    EL
Sbjct: 126 TLDDHFADIVAQGIDIAIR-GGPAIDANLIGHHLFDTRRVVVASPAYLDDHGTPRHPDEL 184

Query: 187 DKHNLITF 194
             H  + F
Sbjct: 185 AAHRCLVF 192


>gi|163855502|ref|YP_001629800.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163259230|emb|CAP41530.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 276

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 3/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  +G F+ AA +L ++ SS++RQ++ LE  +G +L  R  R LTLTE G +  
Sbjct: 40  LAAFIAVVENGGFSPAARRLGVAPSSLTRQVNALERSLGTQLLNRSTRALTLTEVGEQYF 99

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   LE       E +  P G LR++  +  G+  +   L  FL  YP +++ + 
Sbjct: 100 DDGRRVLGDLERADQSAGELTGPPKGVLRLSVPVAFGRLHVAPFLPAFLAAYPGVRLDIQ 159

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L +  ++++    D AIRL  +P  ++  I ++L        A+P YL+    P    EL
Sbjct: 160 LTDAVVNLAEQRMDMAIRLGAQPPDTT--IAKRLAPHRRVICASPAYLEAHGTPAEPHEL 217

Query: 187 DKHNLITF 194
             HN + F
Sbjct: 218 SDHNCLLF 225


>gi|197123754|ref|YP_002135705.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173603|gb|ACG74576.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 301

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 124/254 (48%), Gaps = 7/254 (2%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +L L++S++ + +S LE  +G++L  R  R   LTE G  L         ++E  +  L 
Sbjct: 26  RLGLTRSAVGKIVSRLEGRLGVQLIQRTTRTQRLTEDGQALFERAVNALAEMEAAEAALD 85

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
               +P+G+LR++  + LG+  +   L +    +P ++++L L ++ ID+  D  D A+R
Sbjct: 86  SGRREPAGRLRVSAPVLLGRRCVAPILLDLARQHPKLEVELSLSDRLIDLVADGIDIAVR 145

Query: 146 LRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
            R P+Q S+  + R+L+   M   AAP YL+    P ++ +L  H +I +          
Sbjct: 146 -RGPLQDSTGTMARRLMGQPMTVCAAPAYLRARGIPRTLDDLATHEVIAYVRGGRASSWR 204

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261
           F      +R +  PR   L+++   +I      G G+A LP ++V +      LV ++ D
Sbjct: 205 FPLAEGREREV-TPR-GRLRLDDLEAIADAAEAGLGLAWLPRWLVAERVRRKKLVGVLAD 262

Query: 262 VITPSFTVYFCYPE 275
           V    F  Y  +P+
Sbjct: 263 VPPLVFDFYAVWPK 276


>gi|254225139|ref|ZP_04918752.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125622238|gb|EAZ50559.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 313

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 15/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G  
Sbjct: 5   NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ ++
Sbjct: 65  FLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  D+  +  D AIR  +P  S+ +      +      A+P YL      L   +
Sbjct: 125 LDLSDRLTDMYANPVDIAIRYGQPADSNLVAMLLCDSNERVLCASPEYLTAHPPILHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + F  ++   + +  W+ + +   GE     +Q N   +    + +  V G GI
Sbjct: 185 LQHHNCLCF--MLADTLHN-KWILSRN---GETHSVVVQGNPACNDGEVVHRLAVKGKGI 238

Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A   L D I +D  +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K 
Sbjct: 239 ANKSLMD-ISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREKG 294


>gi|218670462|ref|ZP_03520133.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 269

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 17/254 (6%)

Query: 32  SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91
           S+  + +  LE  +G +L  R  R L+LT++G   ++   EV   ++  +  +   S  P
Sbjct: 1   SAAGKAVIRLEDRLGTRLLNRTTRRLSLTDEGRVFYQHGLEVLASVDEAEASVAGQSAAP 60

Query: 92  SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151
            G LR       G+ ++   ++++LL +PDIQ+++   ++  DI  +  D AIR+     
Sbjct: 61  RGVLRFTVPDAFGRLVVLPIVEKYLLAWPDIQVEVNFTDRKTDILEEGFDLAIRIGTTPS 120

Query: 152 SSS--LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN--- 206
           +S   L+ R +        A+P YL +  EP  I +L  H+ + F     +    F    
Sbjct: 121 ASDTRLVSRVIAADRPRLCASPSYLADRGEPRDIDDLAAHDCLVFSSRDQRQGWRFRGEG 180

Query: 207 --WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
             W+    R       S L+++S  +I    V G GIALLPD++V  +     L +++ +
Sbjct: 181 GAWVKAQGR-------SRLRLDSDEAIRDAAVAGLGIALLPDFLVASDLAAGRLRQVLPE 233

Query: 262 VITPSFTVYFCYPE 275
           + T    +   YP+
Sbjct: 234 LETDDAKIVTLYPD 247


>gi|188583728|ref|YP_001927173.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347226|gb|ACB82638.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 303

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GSF+ A   L LSQ+ +++ ++ LE  +G +L +R  R LTLTE G    
Sbjct: 8   MQVFVRVAALGSFSAAGRALGLSQTGVTKHVAALEARLGTRLLHRTTRRLTLTEAGRTYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +  +   +V+  G LR+   +  G   +   L +F   +P + I+L 
Sbjct: 68  EACERILAEIAEAEAAVGAEAVEAHGTLRLNVPLSFGVREIAPALSDFSTAHPALTIELG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D A+R+   +  S LI R+L    +    AP Y +    P   +EL 
Sbjct: 128 LNDRRVDLIEEGWDLAVRI-GALADSGLIARRLAACRLVTCGAPRYFERHGTPHRPEELK 186

Query: 188 KHNLITF 194
            HN + +
Sbjct: 187 HHNCLGY 193


>gi|254560794|ref|YP_003067889.1| LysRl family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254268072|emb|CAX23944.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           DM4]
          Length = 297

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 129/284 (45%), Gaps = 25/284 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VA+ G F  AA      ++++SR+++ LE  + ++LF R AR L LTE+G  LH  T
Sbjct: 9   FNLVAQHGGFGRAARAAGRPKATLSRRVAELEASLALRLFERGARILKLTEEGRALHERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  T   +     +P G+LRI+  +   Q+ +      F L +P++++++  ++
Sbjct: 69  KVLLTELSETAAAIATGGDRPRGRLRISAPVLFSQSAMAKLAVGFALKHPEVRLEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLSIQELD 187
           + +D+  +  D  IR+  P    SL+ R  +   +   AAP  ++   +   P  I+   
Sbjct: 129 RAVDMVEEGYDLVIRV-NPDPDESLVGRIFLRDRLVVVAAPSMVRPTGDAAAPAVIRGPM 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY---CVLGSGIALL 244
           + ++I              W   +  P G   ++   V S  S+M        G+G   L
Sbjct: 188 EGSMI--------------W--NMKSPAGRSSVTAEPVLSLPSLMMVRDAVRAGAGAGRL 231

Query: 245 PDYIVKDNPNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAF 286
           P  +V  +    R++   D+  P   ++  YP     + ++ AF
Sbjct: 232 PLSLVSHDLAAGRLVLWGDLDRPEIALWTLYPSRRLLSARVSAF 275


>gi|107027363|ref|YP_624874.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693927|ref|YP_839460.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|254249380|ref|ZP_04942700.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|105896737|gb|ABF79901.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651927|gb|ABK12567.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|124875881|gb|EAY65871.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 315

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 129/286 (45%), Gaps = 10/286 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD  RVF  + R  +   AA+ L + Q+++ R+++ LE  +G  LF R ++G   T 
Sbjct: 25  TMNWDDARVFLAIHRERTLRRAAQTLGVDQATVGRRLATLEHMLGATLFLRSSKGYLPTP 84

Query: 62  QGSKLHRVTSEV-YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            G    R    +  H  E  ++  Q    + +G+++I TT  L    +  ++      +P
Sbjct: 85  VGELALRAAEAMEQHAHELVRL-TQGVDRRLAGEVKITTTDALAIEFVMPSIARLHAKHP 143

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L      ++++   AD AIR  +P ++  L+ R+L    M  +A+P YL    EP
Sbjct: 144 DVSVALNTSTHILNLAKREADIAIRTVRP-ENPDLVARRLACWDMGLFASPDYLHRHGEP 202

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +    H+L  +   I    +          PI   RI   + NS L +      G G
Sbjct: 203 ERGRAFAGHDLAVYQPYIDASRKP----TLAGEPIDGGRI-VTRTNSNLMLRAALRAGLG 257

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKA 285
           +  +P ++  +   L RI  D +  S + V+      L++T +++A
Sbjct: 258 VGEIPVHM-GERDGLARIWPDRMRASPYEVWLVTHRDLRHTARIRA 302


>gi|299533309|ref|ZP_07046693.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718839|gb|EFI59812.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 311

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 104/191 (54%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  V R  SF  AA   + S + +S++I  LE E+G+KL +R  R + +TEQG +
Sbjct: 5   EDLRVFTTVVRKASFAEAAAAHNASPAFVSKRIRLLEQELGVKLLHRTTRRVAVTEQGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +  ++E    E+  +  +P G LR++T+   G+N++   L + +  YP +Q++
Sbjct: 65  VYHWAQRILDEVEHLLQEVDVTRRQPRGLLRVSTSFGFGRNVVAPALSQLIAQYPALQLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R L   H    AAP Y++    P ++ E
Sbjct: 125 LEVFDRIVDVAAEGFDLDVRVGDEI-APHLIARHLADNHRVLCAAPAYIQRRGSPRTLDE 183

Query: 186 LDKHNLITFGD 196
           L  H+ +   +
Sbjct: 184 LAAHDCLVIKE 194


>gi|213615474|ref|ZP_03371300.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 279

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|163851101|ref|YP_001639144.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|240138283|ref|YP_002962755.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
 gi|163662706|gb|ABY30073.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|240008252|gb|ACS39478.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
          Length = 297

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 129/284 (45%), Gaps = 25/284 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VA+ G F  AA      ++++SR+++ LE  + ++LF R AR L LTE+G  LH  T
Sbjct: 9   FNLVAQHGGFGRAARAAGRPKATLSRRVAELEASLALRLFERGARILKLTEEGRALHERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  T   +     +P G+LRI+  +   Q+ +      F L +P++++++  ++
Sbjct: 69  KVLLTELSETAAAIATGGDRPRGRLRISAPVLFSQSAMAKLAVGFALKHPEVRLEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLSIQELD 187
           + +D+  +  D  IR+  P    SL+ R  +   +   AAP  ++   +   P  I+   
Sbjct: 129 RAVDMVEEGYDLVIRV-NPDPDESLVGRIFLRDRLVVVAAPSMVRPTGDATAPAVIRGPM 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY---CVLGSGIALL 244
           + ++I              W   +  P G   ++   V S  S+M        G+G   L
Sbjct: 188 EGSMI--------------W--NMKSPAGRSSVTAEPVLSLPSLMMVRDAVRAGAGAGRL 231

Query: 245 PDYIVKDNPNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAF 286
           P  +V  +    R++   D+  P   ++  YP     + ++ AF
Sbjct: 232 PLSLVSHDLAAGRLVLWGDLDRPEIALWTLYPSRRLLSARVSAF 275


>gi|149909211|ref|ZP_01897868.1| transcriptional regulator, LysR family protein [Moritella sp. PE36]
 gi|149807735|gb|EDM67681.1| transcriptional regulator, LysR family protein [Moritella sp. PE36]
          Length = 304

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 102/196 (52%), Gaps = 3/196 (1%)

Query: 3   FDWDK-LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +R +  V   GSF  AA QL+ + S+IS++I+ LE +VG++L  R  R L  TE
Sbjct: 1   MDWIMCVRSYIKVVEEGSFNGAAYQLNTTGSAISKRINWLEDKVGVQLLKRTTRSLDQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++ +     +  +   E +  +  P+G L+I  T  +G   +   L +FLL+YP 
Sbjct: 61  AGQLFYQRSRLQLDQWMSLVDEARSINQTPTGILKIGATTAVGSKFIIKYLNDFLLMYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQL+  +    +   Y D  I R  + + + S    +L       +A+P Y++   +P
Sbjct: 121 IKIQLLTTSPG-QMPEAYVDVFISRDLEQLNTHSYKAIELFKNDAKFFASPDYIEKYGKP 179

Query: 181 LSIQELDKHNLITFGD 196
            SI +L+ HN++ +G+
Sbjct: 180 ESIADLESHNMLIWGE 195


>gi|325275893|ref|ZP_08141744.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324098978|gb|EGB96973.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 226

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VA +GS + AA  L+L+ S++SR ++  E  +G +L  R  R LTLT +G    
Sbjct: 1   MAVFAKVADAGSLSAAARALNLTPSAVSRILARTEHRLGTRLLLRTTRALTLTPEGEAYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    V   L+  +  + +  V P G+LRI+      +  +   L  F   YP + + L 
Sbjct: 61  RGARRVLADLQEVEDAIADQGV-PRGRLRISAAQGHARLTVVPLLAAFSARYPQVLVDLT 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  DI    AD A+R    +  SSL  R +        A+P YL  C  PL  ++L 
Sbjct: 120 ISDEVADIHAGQADVALRFGH-LPDSSLSARPIGETGQVVVASPEYLARCGTPLVPEDLA 178

Query: 188 KHNLITF 194
            HN + F
Sbjct: 179 GHNCLHF 185


>gi|296161068|ref|ZP_06843879.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295888767|gb|EFG68574.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 326

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 25/292 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  +  +GS + AA+QL+ SQ ++SR +  LE  +  +L  R    + LTE G + 
Sbjct: 10  QMSTFIRIVEAGSLSVAAKQLNTSQPTVSRHLRALENHLETQLLVRSTHRMNLTEAGRRY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  K+   + E++  +   SG +R+     +GQ  L      +L   P+++I+ 
Sbjct: 70  YEYARGLIGKMAEFEEEMRGQTFVSSGTMRVVVPTAIGQEWLIELADRYLKECPEMRIEW 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLSI 183
            L +  ++   +  DC IR  +P + +S + R L  +     AAP  ++     R P  +
Sbjct: 130 RLSDASVNFEEEAIDCVIRAGEP-EKTSYVARPLGELRRVLAAAPSIVQRYGEIRNPEDL 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVL 237
            EL    + ++           + +A  DR     RI C++++   ++           L
Sbjct: 189 AELPWIAMTSYYT---------DKIALSDRC---DRIKCVEISPRFALDHVFGTRTAARL 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G G  L+ ++IV+    + +LVR++ D    S  +Y  YP+A     KL+ F
Sbjct: 237 GIGAVLISEWIVRADFADRSLVRLLPDWRGTSLPLYAIYPKAKFYPAKLRQF 288


>gi|237510006|ref|ZP_04522721.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|235002211|gb|EEP51635.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 321

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 127/291 (43%), Gaps = 26/291 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 13  WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L R  +E    +E+T   L  ++        G +RI+ +  +G  +L   +      +P
Sbjct: 73  AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 128

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L L N+  D+    AD A+R+ +P Q + LI R +  I +  +A   YL     P
Sbjct: 129 ALTIELALTNRVQDLLRREADIAVRMTRPGQ-TQLIARHIGGIELGLHAHRDYLARRGTP 187

Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               EL +H LI       F   I K    F+  A             L+ +S L+ +  
Sbjct: 188 RDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----------ALRTDSDLAQLAL 236

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
              G+GI      + K +P LVR++         ++    E L+ + + +A
Sbjct: 237 IRCGAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 287


>gi|163736599|ref|ZP_02144018.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161390469|gb|EDQ14819.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 298

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 130/298 (43%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD +RVF  VAR  S + A   L +  +++ R+IS  E  +   LF +  +G  L+
Sbjct: 1   MDPQWDDMRVFLAVARESSLSGAGRILKMDPATVGRRISRFEEALDTPLFVKSPQGYALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L          +   Q  L   S   SG++RI         LL     +     P
Sbjct: 61  AAGDRLLGHAEAAEQAMRAGQEALVGPSDTLSGQIRIGAPDGSANYLLPQVCAKIGAENP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ IQ++   + I++S   AD A+ +  P     L+Q K+    +H   + HYL+     
Sbjct: 121 DLDIQIVALPRVINLSRREADMAVTVSAPTAGQLLVQ-KITDYKLHLVGSRHYLREHPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             + +L  H +I +   IP  + D   ++LA     +G  R++ L  NS    ++    G
Sbjct: 180 EKLDDLKHHKMIGY---IPDMIFDRELDYLAN----LGVERVA-LASNSVSVQIKLAAEG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + + +  D+ +  + +L +++ D I+ + + Y    +  + + +L  F   +    RD
Sbjct: 232 TALCVAHDFTLPSHRSLRKVLTDKISLTRSFYLVRHQGDQRSDRLNRFAQALSKGIRD 289


>gi|330973145|gb|EGH73211.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 304

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 13/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR  SF  AA++L +S + +S++I  LE  +G+ L +R  R +++TE G +
Sbjct: 8   DDLNVFVHVARRSSFVGAADELGMSAAYVSKRIRLLEQGMGVVLLHRSTRQVSITEDGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++   G+  +   L E    YP + I+
Sbjct: 68  VYEWARGMLDSVQQMGEEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAARYPKLDIR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YL     PL++ E
Sbjct: 128 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPGYLNVHGTPLNLGE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H+ +    +I +    F  +  ++ P G   +     L  N      Q+C+ G G+ 
Sbjct: 187 LANHDCL----VIKERDRPFG-IWHLNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVL 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   + V+ +     LV+++ D    +  ++  +   L ++ K++    F+
Sbjct: 242 LRSLWDVRTDLAEGRLVQVLPDYRQDA-DIWAVHTSPLMSSAKVRVTVEFL 291


>gi|289626680|ref|ZP_06459634.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330868399|gb|EGH03108.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 315

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE G + 
Sbjct: 6   NMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTEAGKRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD+   L
Sbjct: 66  LLRCEQILASVEEAEAEASDAHARPAGQLKVHSMPGVGQHYVIDAIARYRRNHPDVAFDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  + +I L   +  S  + ++L   +    A+P Y+K         +L
Sbjct: 126 TMTHRVPDLLEEGYEVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAHKPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIA 242
             H  +    L+        WL   D P G+  +    S L VNS  ++      G GI 
Sbjct: 186 LNHACLR---LVSPVFPLDKWL--FDGPEGQEMVTINSSPLLVNSADAMKTAISSGMGIG 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP Y   +   N  LVR++ D  +    +Y  YP            R ++  K R W
Sbjct: 241 ILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPS-----------RQYLDAKIRTW 287


>gi|183600926|ref|ZP_02962419.1| hypothetical protein PROSTU_04538 [Providencia stuartii ATCC 25827]
 gi|188019255|gb|EDU57295.1| hypothetical protein PROSTU_04538 [Providencia stuartii ATCC 25827]
          Length = 307

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 129/289 (44%), Gaps = 16/289 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF  VAR  SF+ AAEQL +S + +S++I  LE  +G  LF R +R + LT +G  
Sbjct: 8   EDIRVFVTVARLMSFSRAAEQLLVSPAYVSKRIKLLEENLGQTLFLRASRSINLTHEGRI 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      + H+L+     L     +  G+LR++ +   G   L   +      YP + I 
Sbjct: 68  VLSSGERLLHELDNMHNALNACREEIRGELRVSCSTGFGSAYLNPFILALRANYPLLGID 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ IDI  +  D  I +   I     I +++        A+P YL+    P   QE
Sbjct: 128 LTLTDRSIDIISENIDLDIYIGGTI-PDHYIAKQIAKNKRILCASPAYLEQHGSPNHPQE 186

Query: 186 LDK-HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L+K H  IT  +   +      W L      +     S L VN+     Q+C+ G GI L
Sbjct: 187 LEKQHFCITIKE---RNQAPAQWKLQHQTESMTVAPNSKLMVNNGDVAKQWCIGGEGILL 243

Query: 244 ------LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
                 LP+    ++  L+R++     P+  VY  Y    +N   L+ F
Sbjct: 244 RSLWSVLPEL---ESGKLIRVLPQWSQPA-DVYAVYSRTARNNANLRVF 288


>gi|163800143|ref|ZP_02194044.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
 gi|159175586|gb|EDP60380.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
          Length = 309

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 139/297 (46%), Gaps = 26/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLVITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   +EL  E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 73  DQSIAMVNAAQQA-VELSAEDHTEPTGALTVAAPEAFLNSVLQPFVLPFLERYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + +ID+     D A +L  KP    +L+ +++   ++   A+P YL     P    E
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDKP--DENLVLKEISKTNLVLCASPSYLTKHGMPKHPTE 189

Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L+ H+ I   +     +      E F+ +A   R           VN     +     G 
Sbjct: 190 LEHHDCIYLAENDKDNIWSFFKEEAFHSIAVSGR---------YAVNHSQMRLNGVKAGL 240

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  D+++KD      +V ++ D +  S     +   YP+      +L+ F +F+
Sbjct: 241 GIGIFHDFVIKDALEQEEVVEVLPDWMIKSNYHGAIAMQYPQTKYMPARLRVFIDFV 297


>gi|153824363|ref|ZP_01977030.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|149741917|gb|EDM55946.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
          Length = 313

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 15/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G  
Sbjct: 5   NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ ++
Sbjct: 65  FLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  D+  +  D AIR  +P  S+ +      +      A+P YL      L   +
Sbjct: 125 LDLSDRLTDMYANPVDIAIRYGQPADSNLVAMLLCDSNERVLCASPEYLAAHPPILHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + F  ++   + +  W+ + +   GE     +Q N   +    + +  V G GI
Sbjct: 185 LQHHNCLCF--MLADTLHN-KWILSRN---GETHSVVVQGNPACNDGEVVHRLAVKGKGI 238

Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A   L D I +D  +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K 
Sbjct: 239 ANKSLMD-ISQDIIDGRLVRILPEWESGPVPIYLVCADRRLITPTIRAFQEFIREKG 294


>gi|145299170|ref|YP_001142011.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851942|gb|ABO90263.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 310

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 137/294 (46%), Gaps = 17/294 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  VA   SFT +AEQL + ++++S  I  LE ++G +L +R  R + LT  G  
Sbjct: 5   DAMRMFMRVAELESFTRSAEQLGMPKATLSAAIRRLEEQLGARLLHRTTRRVQLTTDGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESS--VKP----SGKLRIATTIDLGQNLLQGNLKEFLLLY 119
                   Y + +    +++E +   +P    SG+LR+     + ++L+   L  FL  +
Sbjct: 65  -------CYARCQALLADMEEFNGLFRPHGQLSGQLRVDMPSRMARHLVIPALPAFLATH 117

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+Q+ L   ++ +D+  +  DC +R+   ++SSSL+ R L        A+  YL     
Sbjct: 118 PDLQLMLSSTDRRVDLVREGFDCVVRV-GALESSSLVARPLGHYRQINCASATYLARHGI 176

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P ++ +L  H L+ +G +       F +L              L VN   + +   + G 
Sbjct: 177 PQTLADLAGHRLVHYGAVPGDKEAGFEYLQADGSRAVLAMAGTLTVNDSETYLAAALAGL 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P   V+    +  LV ++     P   ++  Y    + + +++AF +++
Sbjct: 237 GIIQMPRVGVEALLASGELVMVLPQWQAPPLPIHALYAHRRQLSPRVQAFIHWL 290


>gi|327194059|gb|EGE60933.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 314

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 131/291 (45%), Gaps = 18/291 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GSF+ AA    L +S +SR+++GLE  +G++L  R  R L +TE G  L   
Sbjct: 2   LFAAVVHHGSFSAAALAHGLPKSKVSRRVAGLERRLGVRLLQRSTRALHVTEVGQAL--- 58

Query: 70  TSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                   E+ Q  L+ ++     PSG+L+++  I +    L   L +FL  +P ++ +L
Sbjct: 59  LPHCESMAESAQAALEVAASAGEYPSGRLKVSCPIGVAHIYLAPVLGKFLKAHPAVEFEL 118

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L N+ +D+  +  D A+R+R  +  S+L+ R L T      A+P ++       S   L
Sbjct: 119 DLTNRRVDVIAEGYDVALRIRSSLDDSNLVVRSLGTSEQMLVASPEFIATHGPFGSADSL 178

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGSGIA 242
            +   +      P  +       ++ +P G       +  L  +    + Q  + G G+A
Sbjct: 179 QRKPGVG-----PAGVRGERNFWSLLKPDGVSIDIEYLPTLMTDDVYVLCQAALAGIGVA 233

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP  I  D   +  LV+++      +  ++  +P        ++AF +F+
Sbjct: 234 RLPVNICGDAIRDGRLVKVLPHYRLHAHGLHAVFPSRRGLVPAVRAFLDFL 284


>gi|325521638|gb|EGD00411.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 308

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 113/250 (45%), Gaps = 10/250 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   +AR  SF  AA +L +S +++S  ++GLE  + ++LF R  R ++LT+ G + 
Sbjct: 8   ELEVVLALARRSSFRGAALELGMSTTAVSSAVAGLEARLTVRLFNRSTRSVSLTDAGRRY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++ +   E    S  PSG LR+         L++     +   YPD++I +
Sbjct: 68  VTRIAPALDEIRSAGEEAGTGSDTPSGTLRVNAPQGAAFLLMEPLFYRYAQRYPDVRIDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +++ IDI  +  D  IRL + +    +       I M   A P YLK    P   ++L
Sbjct: 128 VSESRMIDIVAEGFDAGIRLAESVPQDMIAVPLSRDIRMLVVATPDYLKAHGTPRHPRDL 187

Query: 187 DKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H  I    + G +    +E       +D P+       L +N   +I Q  +LG GI 
Sbjct: 188 LAHRSIGMRMSHGGIYHWELERKGEKLRMDLPV------RLALNEMAAIKQAVLLGLGIG 241

Query: 243 LLPDYIVKDN 252
            + ++ + D 
Sbjct: 242 FISEWFIDDE 251


>gi|167549830|ref|ZP_02343588.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205325033|gb|EDZ12872.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 301

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLDVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|149923396|ref|ZP_01911802.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149815754|gb|EDM75279.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 324

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 139/295 (47%), Gaps = 14/295 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D ++L +F  V  + SFT A   L L +S++SR+++ LE  +G++L  R  R ++LT+ G
Sbjct: 6   DLNQLVIFAKVVEARSFTGAGRILGLPKSTVSRKVAQLEERLGVQLLQRTTRRISLTDVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +   + +  ++   +  +   +  P G LR+    +LG   L+  + EFL+++  + 
Sbjct: 66  AAFYERCARIATEIAEAEEAVLHVNEGPRGVLRVHADPELGVG-LRAAVCEFLVVHDQVD 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-----YAAPHYLKNCR 178
           I+L       D+  +  D ++RL  P + ++   R LVT  +H       A+P Y     
Sbjct: 125 IELEFSAGVGDLIEEGFDVSLRLEAPEEPAA---RGLVTRRVHGLARVLVASPDYYARHG 181

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P + ++L+ H ++  G+  P+              +   R   L  N   ++ +  + G
Sbjct: 182 TPQAPEQLEDHAIVIHGN--PRGRSSLQLCNVEGEVVVVQRRPRLVANDPATMREALLGG 239

Query: 239 SGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI L+P +    +  N  L   +++      +V+  YP A   +GK++ F +F+
Sbjct: 240 VGIGLIPAFECVHLLRNGELRTCLDEWTRFDESVHVAYPTARHLSGKVQTFLDFV 294


>gi|90412966|ref|ZP_01220964.1| transcriptional regulator [Photobacterium profundum 3TCK]
 gi|90325981|gb|EAS42420.1| transcriptional regulator [Photobacterium profundum 3TCK]
          Length = 302

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 132/294 (44%), Gaps = 27/294 (9%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           + F  V   GS   AA +L+ S S++S+++S LE ++G++L  R  R LT+T+ G   ++
Sbjct: 8   KSFVTVVEQGSLAQAATKLNTSSSALSKRLSWLEKQLGVQLLKRTTRSLTVTDAGKLFYQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL-- 126
            ++ +    +    E   +  + SG LRI   +  G  LL   L EF+  YP IQ++L  
Sbjct: 68  RSARLLDDWQQMLAETTSTYGEVSGVLRIGAPLATGSRLLVNYLAEFIETYPKIQVELHT 127

Query: 127 -----ILD-NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
                + D N D+ IS +  D          SSS I  +L       YAAP YL++    
Sbjct: 128 VTPGQLPDLNLDVFISRELTD--------FNSSSYIATRLFDFQPGFYAAPSYLEDKPII 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            + Q+L  HN + FG    +    F N L    R             +  +++   V G 
Sbjct: 180 ENHQQLTMHNCLLFGTHGHEQEHIFENNLHLRLR-------GNFTTQNPEALVAAAVAGM 232

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI L     VK   +   LV ++ ++  P  + Y  YP+   N  K K F +FI
Sbjct: 233 GIILAGGNTVKRELSKGLLVPVLPELKQPISSAYAYYPKLDYNHVKTKLFIDFI 286


>gi|86356453|ref|YP_468345.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280555|gb|ABC89618.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 298

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 128/289 (44%), Gaps = 15/289 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  +GS + A   L  S + +S++I  LE  +G +L  R  R ++LTE G   +
Sbjct: 7   LEIFAKVVATGSMSLAGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +  +   S +  G L+I+     G+  +  +L  F+  +P++ I L+
Sbjct: 67  DRVLGILAGLEEAEFYISGRSAQMHGTLKISAPTSFGRMHIAPHLTAFMQAHPELAINLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  DI     D AIR+ + +  SSL+ R+L  +     A+  YL    EP  I EL 
Sbjct: 127 LTDEFSDIIGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASADYLAAHGEPRDIDELK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H        +P    D   L   D P+       L  NS   I +  + G GIAL   +
Sbjct: 186 HHR------CLPAHNGDTWRLNGPDGPLSLRPDGMLITNSSEVIREAVISGLGIALRSTW 239

Query: 248 IVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
            + +     R+++  + P++      T+   YP       K++ F +++
Sbjct: 240 DIGNELKSGRLVQ--VLPAYEGSHNVTLSAVYPSRQFLPAKVRLFIDYL 286


>gi|229589939|ref|YP_002872058.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361805|emb|CAY48693.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 310

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  V   GSF+  A +  L+ SSISRQI  +E  +G +L YRH R ++ TE G  L 
Sbjct: 12  LRLFVAVLDFGSFSEVARREGLAPSSISRQIQLMEQALGQQLLYRHTRAVSPTEAGRLLG 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +  +LE     LQE   +PSG +RI   +  GQ  +   L E    YP +Q+ + 
Sbjct: 72  RHARLMLEQLEAAGQALQEQESEPSGLVRINAPMVFGQRHISPWLGELCRRYPKLQLDIQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D   D  D   R+   +  SS+  R          A+P YL     P    EL 
Sbjct: 132 QTDTYVDPLQDGTDLLFRI-GVLNDSSMQARIFAPQRFRLAASPAYLARHGTPQHPDELI 190

Query: 188 KHNLITF 194
            H  + +
Sbjct: 191 NHQCLAY 197


>gi|221213322|ref|ZP_03586297.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221166774|gb|EED99245.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 346

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 125/300 (41%), Gaps = 25/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G  
Sbjct: 51  NALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGRD 110

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + ++      +  S    SG L I+ T       L   L +F    PD+ +Q
Sbjct: 111 YLPPVRNAFRQIADASQRV--SGAADSGVLTISVTPFFASAWLVPRLAQFRDACPDVDLQ 168

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  +   D + D  D AIR     + + L    L+T+ + A A+P  +     P +  +
Sbjct: 169 IVTSHALADFARDGVDVAIR-HGLGRYAGLCSEHLLTVEIVALASPELVARLGMPRTPAD 227

Query: 186 LDK----HNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L      H+    G  I    + ++DF          G PR         L  +Q  V G
Sbjct: 228 LVDWPHLHDAERKGWHIWFDAQRIDDF----------GAPRGPAFDDAGLL--LQAIVAG 275

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G  LLP  +V+    N  LV++ +      F  Y  YP       K+ AFR +I   AR
Sbjct: 276 QGAGLLPAAMVRGELANGRLVQLADVARLDDFAYYLVYPPHHAERPKVAAFRRWILDAAR 335


>gi|15890564|ref|NP_356236.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15158811|gb|AAK89021.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 306

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 26/295 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VAR GSF+ AA++L L+Q +ISRQ+  LE ++G++LF R ARG++LT +GS 
Sbjct: 13  SALAAFDSVARLGSFSAAADELALTQGAISRQVMSLEEQLGVRLFERGARGVSLTTEGSA 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +    ++ +  +++     K  G  L +A     G   L   + +F+  +P+I I
Sbjct: 73  YAKSIAAALGEIRSASLQIM---TKTHGNTLNLAMLPTFGTRWLLPRIPDFVANHPEITI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
                    D   +  D AI + +   P   S+ +  ++V        +P +       L
Sbjct: 130 NFATRIGQFDFEREQLDMAIHIGQADWPGAESTFLMHEMVA----PVCSPQF-------L 178

Query: 182 SIQELDKHNLITFGDLIPKCMED---FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           S   ++K   I    L+          +W  ++   +  P+   ++   + S+ Q C+ G
Sbjct: 179 SAHPVEKGEDIAALPLLHMASRPGAWGHWFESLGLSLALPQ--GMRFEQFSSVAQACIAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+AL+P +++ +   +  LV+  +       + Y   P +  N   +  FR+++
Sbjct: 237 LGVALMPLFLIDNELKSKQLVKAFDHQARSPSSYYAVAPLSRANHAPVVLFRDWL 291


>gi|307294936|ref|ZP_07574778.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306879410|gb|EFN10628.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 299

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 128/290 (44%), Gaps = 20/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  +    +F+  AE+LH S ++++R++  +E   G  LF+R  R L  T +  +L 
Sbjct: 8   LRTFVRLCEKPNFSRVAEELHASHTTVARRLDQVEAHFGAVLFHRTTRRLIATPEADRLL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  + +      +P G +RI  T  LG + ++  L E    YP +Q    
Sbjct: 68  IHARAMLDALEGAERDFGPVRGEPGGLVRIGFTTALGLHYVE-RLGELTARYPALQFDCA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+  D  D A+R+  P+    L+   L  +     A P YL     P S ++L 
Sbjct: 127 MTDWQRDMVEDRLDLALRV-GPVGDDRLVVHPLGRLPRLLVARPAYLAVHGMPASAEDLP 185

Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIAL 243
            H  I   +GD+  +      W  T+D   G  R+     + +S  ++ +  + G GIAL
Sbjct: 186 AHQCIAYAYGDVPAR------W--TID---GRERVVGGAFRSDSSEAVHRAALSGLGIAL 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP   V+D+     L  ++ D +     +   +P   +   + +A  +F+
Sbjct: 235 LPAVRVRDDIAAGRLAPVLPDSVIAPLDIAAVHPSHKRPAPQARAVLDFL 284


>gi|229519898|ref|ZP_04409330.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229343092|gb|EEO08078.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 313

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 15/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G  
Sbjct: 5   NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ ++
Sbjct: 65  FLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTMK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  D+  +  D AIR  +P  S+ +      +      A+P YL      L   +
Sbjct: 125 LDLSDRLTDMYANPVDIAIRYGQPADSNLVAMLLCDSNERVLCASPEYLATHPPILHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + F  ++   + +  W+ + +   GE     +Q N   +    + +  V G GI
Sbjct: 185 LQHHNCLCF--MLADTLHN-KWILSRN---GETHSVVVQGNPACNDGEVVHRLAVKGKGI 238

Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A   L D I +D  +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K 
Sbjct: 239 ANKSLMD-ISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREKG 294


>gi|262044473|ref|ZP_06017531.1| LysR substrate binding domain protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038166|gb|EEW39379.1| LysR substrate binding domain protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 310

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 10/264 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D+  L++F  V  + SF+    +  +S S ISR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   SVDFRALQLFIAVYDNQSFSVVTRREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  +    Q  LQ+ +  P G +RI   +  GQ  +   L E    +P 
Sbjct: 66  AGRLFAASARELLGQYADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELAARHPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q  L L +  ID   D  D   R+   +  +    R   +   +  A+P Y+     P 
Sbjct: 126 LQFDLTLTDDFIDPHRDATDILFRISS-LPDAGYHARVFGSQRYYLTASPEYVSRYGSPT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S + L +H  + +G           WL     +  +  P    +  N+  +++   + G 
Sbjct: 185 SPEALHQHRTLVYG----GSQGANRWLFRQREEAWLHYPLTPLMTSNNADALLTSAIGGM 240

Query: 240 GIALLPDYIVKD---NPNLVRIME 260
           GI L PD++V +   N  LV +M+
Sbjct: 241 GIVLFPDWMVSEALHNGTLVTLMD 264


>gi|237816688|ref|ZP_04595680.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|260544363|ref|ZP_05820184.1| transcriptional regulator [Brucella abortus NCTC 8038]
 gi|237787501|gb|EEP61717.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|260097634|gb|EEW81508.1| transcriptional regulator [Brucella abortus NCTC 8038]
          Length = 325

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 128/287 (44%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G  L     R + LTE G   H
Sbjct: 27  MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTSLLQCTTRQIALTEAGQGYH 86

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 87  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 146

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P +I++L 
Sbjct: 147 LSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 205

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP G      LQ NS   + +  + G GIA    +
Sbjct: 206 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 259

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 260 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306


>gi|221069188|ref|ZP_03545293.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220714211|gb|EED69579.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 326

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 19/253 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR  +F  AA++L L+QS++SRQI  LE EVGI LF RH+R + LT  G++L 
Sbjct: 22  LRAFLAVARHLNFRAAADELALTQSAVSRQIQSLEDEVGIPLFLRHSRAVELTGAGAQLL 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    ++ T  +++++  + S  + I T        L   L+ F   +PDI I++ 
Sbjct: 82  HAAQPALESIDATVRQIRQTVGRKS--VAITTWASFAAMWLIPRLEAFQRAHPDIDIRID 139

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS---LIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +  +D+     D AIR    +  +S   L   +LV +     A+P  L++     S  
Sbjct: 140 TGDAVVDLETTDVDLAIRYSAGVSDASAKALFGEELVLV-----ASPTLLRSGPAVRSPA 194

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLG 238
           +   + LI  GD+    M    WL +  R         LQ   +L       I+Q  + G
Sbjct: 195 DAAHYTLIETGDV--HRMPQLEWL-SWQRWFAANGCDQLQPPRWLYFNYAHQIVQAALAG 251

Query: 239 SGIALLPDYIVKD 251
            G+A+    +V D
Sbjct: 252 QGLAIARLPLVAD 264


>gi|329849512|ref|ZP_08264358.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
 gi|328841423|gb|EGF90993.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
          Length = 306

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 128/304 (42%), Gaps = 42/304 (13%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   AR+GS T AA +L+L+QS++SRQI  LE ++ ++LF+R  + + LT  G    
Sbjct: 14  LQAFEAAARTGSVTLAARELNLTQSAVSRQIKALEEQLEVELFHRERQTIRLTPGGEAYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +   K+ T  + L+ + +   G L +A     G   L   L  FL   P I + L+
Sbjct: 74  RDIRDALKKIGTASLNLRANPL--GGTLNLAILPTFGTRWLAPRLPSFLNANPGITLNLM 131

Query: 128 LDNKDIDISMDYADCAIR---LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
                 D +++  D AI     R P   + L++ + V            +  C   L  Q
Sbjct: 132 TRLTVFDFALEPLDAAIHHGLGRWPGAETVLLREEYV------------VPACSPALKAQ 179

Query: 185 ELDKHNLITFGDL----------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               H   T  DL           P   E   WL   + P     +  +  + + ++ Q 
Sbjct: 180 ----HGFATASDLRAAPLLHLTTRPDAWE--RWLRVHNAPAEH--VQGMLFDQFATVAQV 231

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIME----DVITPSFTVYFCYPEALKNTGKLKAFR 287
              G G+ALLP +++++      LVR ++      +  +   Y  +P        L+AFR
Sbjct: 232 ARAGLGVALLPTFLIEEELKAGQLVRALDLPDGGEMKNAEAYYLAWPAERAEHPPLRAFR 291

Query: 288 NFIF 291
            +I 
Sbjct: 292 EWIL 295


>gi|270304149|gb|ACZ71241.1| alginate lyase [Vibrio sp. AL14]
          Length = 293

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 17/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  +G F+ AAE L +  + +SR +S +E+++G+ +F R  R + LTE+G +
Sbjct: 6   DDLEMVLTVVDAGGFSAAAEALDVQVAKVSRSVSKVESQLGVSIFNRTTRRVELTEEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      +++ + E+      P G+LR+        + L   ++ F   YPDI+++
Sbjct: 66  FVDSVRLGLQVIQSAEEEIVSRGELPKGRLRVDAASPFVFHQLVPLVQSFKEAYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    +H  A+P YL     P   ++
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LSDSTLHARPLGKSLLHIVASPDYLAKRGLPTKPED 184

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H ++ F G+ +       N     ++    P ++    N  + + Q  + G+GIA L
Sbjct: 185 LSSHQVVGFAGNKV------LNHWPLPNQSYIPPTVTA--SNGEI-VRQLALAGNGIACL 235

Query: 245 PDYIVKDN---PNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++V+D+     LV I+E      T    V   Y ++   + ++ AF +FI
Sbjct: 236 SGFMVQDDIAAGRLVPILEQDKLANTDRERVNAVYYKSSSVSKRISAFIDFI 287


>gi|78048553|ref|YP_364728.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925594|ref|ZP_08186979.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|78036983|emb|CAJ24694.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543994|gb|EGD15392.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 304

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 7/286 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GS T  A  L LS +  S+++  LE E+G++L +R  R L  T +G +L   
Sbjct: 9   LFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTAEGQRLAER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L+    +L+ES+    G LR+  +   G+  +   L EF   +P ++I   L 
Sbjct: 69  GRVLVEDLDALAEDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPRLRISAHLS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+     D AIR+  P++ S L+ R++        A+P YL+    P +  EL +H
Sbjct: 129 DDLVDLVKQGFDLAIRI-GPLEDSGLVARRIADNRRTLAASPAYLQRHGTPRTPDELAQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             +    +     +D   L T D  +   R+ S  + N    +    V G GIA+   + 
Sbjct: 188 AGVLL--MGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAVHSYWH 245

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + D   +  LV +M D   P+  +    P       +++AF +F+ 
Sbjct: 246 IADELRSGRLVEVMRDYPPPTSHISAVTPARQLQPPRVRAFVDFLL 291


>gi|330448310|ref|ZP_08311958.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492501|dbj|GAA06455.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 306

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 116/244 (47%), Gaps = 13/244 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  + ++   + A  +L LS ++++ ++  LE   G+KL  R  R ++LTE G+
Sbjct: 4   FSDMTLFISIVKNQGMSAAGRELGLSPATVTARLQALEDRYGVKLLNRSTRHISLTESGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+   E+   ++ T+  LQ  S +  G L+I+   D+G+  +   +  F   YPD+  
Sbjct: 64  LYHQACLEIIDSVKETENLLQTGSQEVRGTLKISAPRDIGKQYISPIITAFCERYPDVVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L LD+K  +++    D  IR  + +  S+LI RKL        A P YL     P++ Q
Sbjct: 124 YLYLDDKLTNLAESGIDIVIRYGE-MADSNLISRKLAASRRVLCATPEYLAKKGTPVTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L  H+ +    +I    E   W  T D      P+   R S    +    I Q+ + G+
Sbjct: 183 DLADHHCLA---MIRSNEELKTWHFTDDNQQTVIPLVPKRFS----DDGEVIRQWALDGA 235

Query: 240 GIAL 243
           GIAL
Sbjct: 236 GIAL 239


>gi|323498848|ref|ZP_08103831.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315960|gb|EGA68988.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 295

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 125/260 (48%), Gaps = 17/260 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW++ R F VVA  GSF+ A   L++SQ ++ RQI+  E E+ + LF R  + L LT
Sbjct: 6   IGFDWNRARAFLVVAEEGSFSAAGRALNMSQPTLGRQIAAFEQELKLTLFERVGKKLVLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNL--LQGNLKEFLL 117
           + G KL++  +++        +         +GK+ I+ T +D       L   LKE+  
Sbjct: 66  DSGQKLYQHVTQMAESANQMLLTALGQDESIAGKVSISLTELDAFFRFPPLITRLKEYA- 124

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P I I+LI+ N+  D+    AD A+R ++P     LI RK+    ++ Y     +K+ 
Sbjct: 125 --PHIDIELIVSNQVSDLKRREADIAMRYKRPT-DLDLIARKIGHETVYLYGHKDLIKSF 181

Query: 178 REPLSIQELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            E  S  E+ K ++I F   + + + ++   W    D       + C   N+ L   Q  
Sbjct: 182 -EDKSPNEVAKLSIIGFDHEEYLRQHLKHSGW----DLKHNPFTLVC---NNQLVQWQLA 233

Query: 236 VLGSGIALLPDYIVKDNPNL 255
                + LLP++I   NP+L
Sbjct: 234 QHTRSLILLPEHIAHHNPDL 253


>gi|240138323|ref|YP_002962795.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
 gi|240008292|gb|ACS39518.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
          Length = 310

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 12/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F   A +GSF+ A   L LS S IS +I  LE  +G  L  R  R + LTE G  
Sbjct: 5   ESVRIFMRAAETGSFSAAGRSLRLSPSVISYRIQTLEEHLGCLLLTRTTRRMNLTEAGRV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +E  +  ++     P G L++   + LG+ ++   +  F   +P+  + 
Sbjct: 65  FYDRCLDIAASVERAEKSVETQGAAPRGTLKVTAPLTLGRRVVAPLIPGFRERHPEADVH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+  +  D A+RL + ++ S+   RK+  I     A+P YL     P S  +
Sbjct: 125 LRLSDHLLDLVQEAVDVAVRLAQ-MRDSTFTLRKVADIERILCASPAYLAEHPAPESPAD 183

Query: 186 LDKHN--LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H   L+ F        E F W L   D  +  P    +  +    + ++ + G GI 
Sbjct: 184 LIDHACLLLRF-----PGSEQFRWSLRDGDEVVTLPVAGPIDADDGDVLTEWALQGQGIV 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L P + V     +  LV ++        ++   YP       + K F
Sbjct: 239 LKPVFEVAPYLADGRLVPVLPGTPPTPVSLGVVYPSRKMLPARAKTF 285


>gi|17549218|ref|NP_522558.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431470|emb|CAD18148.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 306

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 134/294 (45%), Gaps = 16/294 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A +GS + AA  L ++  ++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 10  ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++     L ++  +P G LR+  T+  G+  +   + E++  YP + +QL
Sbjct: 70  LEHARRILGEIDDLDQLLTQAKGRPRGLLRVNATLGFGRRHIAPAISEYVRQYPGVDVQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  IR  +P   + +I RK+        AAP YL+    PL+  +L
Sbjct: 130 QLTADPPPLNEDAFDVCIRFGEP-PDARIIARKVAPNRRLLCAAPDYLRRHGTPLAPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239
            +HN I     I +  + +  W  T  +     R   + V   L+       + + + G 
Sbjct: 189 ARHNCIG----IRQGSDAYGVWRLTSGKGTKR-RTETVHVRGNLTTNDGEIAVNWALEGH 243

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +   + V+       LV+++    TP   +Y  Y +  + + +++ F  F+
Sbjct: 244 GIVMRAQWDVERYLRGGQLVQVLPLYATPEADIYAVYLQRHQLSPRIRLFVEFL 297


>gi|325522279|gb|EGD00900.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 308

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 126/300 (42%), Gaps = 25/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G  
Sbjct: 10  NALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGRD 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + ++      +  S    SG L ++ T       L   L +F    P++ +Q
Sbjct: 70  YLPPVRNAFRQIADASQRV--SGAADSGVLTVSVTPFFASAWLVPRLAQFRHACPEVDLQ 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  +   D S D  D AIR     +   L   +L+T+ + A A+P  +     P +  +
Sbjct: 128 IVASHALADFSRDGVDVAIR-HGLGRYVGLCSERLLTVEIVALASPALVARLGMPATPAD 186

Query: 186 LDK----HNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L      H+    G  I    + ++DF          G PR         L  MQ  V G
Sbjct: 187 LVGWPHLHDAERKGWHIWFDAQRIDDF----------GPPRGPAFDDARLL--MQAIVAG 234

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G  LLP  +V+D   +  LV++ +      F  Y  YP       K+ AFR +I   A+
Sbjct: 235 QGAGLLPAAMVRDELASGRLVQLADTAWLDDFAYYLVYPPHHAERPKVAAFRRWILDAAQ 294


>gi|190893017|ref|YP_001979559.1| transcriptional regulator protein (activator), LysR family
           [Rhizobium etli CIAT 652]
 gi|190698296|gb|ACE92381.1| transcriptional regulator protein (activator), LysR family
           [Rhizobium etli CIAT 652]
          Length = 289

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 26/298 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L ++Q+++S+Q+ GLE  +G+ LF R  RGL +T +G  
Sbjct: 9   NGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKGLEKRLGVALFQRLPRGLKITAEGEA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +  + ++ TT   ++   V+    L +  T  +G  LL+  L +F   +P I I+
Sbjct: 69  LLPTVTASFDQMATTLDRIEAGEVRELLFLGVIGTFAVGWLLLR--LADFQRRHPFIDIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +N  +D + +  D AIR                +   H   A H  +     L I E
Sbjct: 127 VSTNNNRVDPAAEGLDFAIRFG--------------SGSWHGTEAQHLFEAPLSALCIPE 172

Query: 186 LDKHNLITFGDLIPKCM-------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L   +L T  DL    +       E   W A    P      + +  +S +++M+  + G
Sbjct: 173 L-ADDLRTPADLAGATLLRSYRADEWSTWFAAAGVPPAAQVNAGIVFDSSVAMMEAALQG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYP-EALKNTGKLKAFRNFIFLKA 294
            G+AL P  +   + +   I++   T  S   Y+    ++   T  ++AF ++IF +A
Sbjct: 232 LGVALAPPSMFSRHLSSGAIVQPFTTTISLGSYWLTRLQSRPVTPAMRAFSDWIFAQA 289


>gi|220927951|ref|YP_002504860.1| LysR family transcriptional regulator [Clostridium cellulolyticum
           H10]
 gi|219998279|gb|ACL74880.1| transcriptional regulator, LysR family [Clostridium cellulolyticum
           H10]
          Length = 292

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 129/250 (51%), Gaps = 18/250 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +++  ++FY  A + SF+ AA +L ++QS++S+ +  LE ++GI LF+R +R + LT
Sbjct: 1   MDINFELYKIFYHCAENKSFSAAARKLFITQSAVSQSVKSLEKQLGITLFHRKSRNIQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L    S+ Y+ L+T + +L+E     +G++RI  +  + +  +   +K+F  +YP
Sbjct: 61  NEGELLFSYVSQAYNFLKTAEEKLKEFEGLTAGEIRIGVSDSICKYFVMPYIKKFGQMYP 120

Query: 121 DIQIQLILDNKDIDISMDY-----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           +I +++I  N+     +D       D AI    P+   +      +++     A+  + +
Sbjct: 121 NIMVKVI--NRTTPQLLDVLKGGLIDIAISTL-PVNEDTFNAAPFISVQDIFVASDKFKE 177

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIM 232
                +S+QEL+ + L+           D +   +VDR      ++C   +++ S   ++
Sbjct: 178 LKGREISLQELNGYPLVLL-------QSDSSTRKSVDRFFQNQGLTCSPEIELESLDLLV 230

Query: 233 QYCVLGSGIA 242
           ++  +G+GIA
Sbjct: 231 EFAKIGTGIA 240


>gi|86159639|ref|YP_466424.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776150|gb|ABC82987.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 301

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 130/289 (44%), Gaps = 16/289 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F V AR+ SF+ AA ++ +S +++S+ +  LE ++ + LF R  R + LT+ G   
Sbjct: 8   QLQTFLVAARTRSFSAAAREIGVSPAAVSQSVRQLEDQLRVVLFTRTTRTVALTDAG--- 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            R+       L      LQE S +P    G+L++         ++   L  F   +P ++
Sbjct: 65  RRLLEGAGPGLGQALASLQEVSAQPGEAVGRLKLTVPEVAVPYVVTPVLAAFRARHPRVE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++++N+ +DI  D  D  +RL + I+   +  R           AP Y++    P   
Sbjct: 125 VEIVVENRFVDIVADGYDAGVRLHEAIERDMVQVRLTDAFRFVVVGAPSYVERYGTPRRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L +H   TF   IP     F W L    R    P    +  N     +     G G+A
Sbjct: 185 EDLLRHECFTF--RIPSSGALFAWELERGRRNWRVPVRGSVVTNDRRLTLALVEQGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAF 286
              +  V++      LVR++E+     P F +YF  P   + +G L+ F
Sbjct: 243 YAFEPAVREELRTGRLVRVLEEYAPTVPGFFLYF--PSRAQRSGPLRLF 289


>gi|59711198|ref|YP_203974.1| DNA-binding transcriptional activator GcvA [Vibrio fischeri ES114]
 gi|197336135|ref|YP_002155348.1| glycine cleavage system transcriptional activator [Vibrio fischeri
           MJ11]
 gi|59479299|gb|AAW85086.1| DNA-binding transcriptional dual regulator, glycine cleavage system
           transcriptional activator [Vibrio fischeri ES114]
 gi|197317625|gb|ACH67072.1| glycine cleavage system transcriptional activator [Vibrio fischeri
           MJ11]
          Length = 302

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 133/303 (43%), Gaps = 31/303 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NSLRVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++  L     ++ E S K  G L I+         L   L +F    PDI ++
Sbjct: 69  YFLDIKEIFSSLSEATDKVLERSAK--GALTISLPPSFAIQWLVPRLSDFNNQEPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + D     +  D AI   R   P ++   L Q +L+ +      +P  L N +   
Sbjct: 127 IKAVDMDEGSLTEDVDVAIYYGRGNWPGLRVELLYQEQLLPL-----CSPQVLLNEKPLA 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS------YLSIMQYC 235
           +I +L  H L+   D   K  + F         +    ++ + VN          ++Q  
Sbjct: 182 TIDDLRFHTLLH--DTSRKDWKQF---------VKHYELAGMNVNQGPIFSHSTMVLQAA 230

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G GIAL  + + +   D   LV   E+V+      Y    E   +TG++  FR +I  
Sbjct: 231 AHGQGIALGNNVLAQPELDAGRLVAPFEEVLVSKNAFYLVCNEKQADTGRIATFREWILS 290

Query: 293 KAR 295
           KAR
Sbjct: 291 KAR 293


>gi|83717382|ref|YP_438437.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651207|gb|ABC35271.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 454

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 12/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 150 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 209

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  + E    L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 210 NKLYSASQEFVSGLYDVIGSIRRLRHESTGLLRVAAPSGFSTAHLSSIAATFIHQHPQIE 269

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 270 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQMLVASPEYSRKHAVPRHP 328

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 329 DDLPGSHWIGHGGL---ANLSYSVFGNEGRSVRVQTSGRLKVKSVLLAHQMALAGAGISA 385

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            PDY+V ++     L R++     P   +Y     A + + +  + R  +FL A
Sbjct: 386 FPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTSPRQASVRERLFLSA 434


>gi|332530248|ref|ZP_08406194.1| transcriptional regulator [Hylemonella gracilis ATCC 19624]
 gi|332040234|gb|EGI76614.1| transcriptional regulator [Hylemonella gracilis ATCC 19624]
          Length = 305

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 9/195 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++ VF  V  +GSF+ AA Q+ ++ S+ SR ++ LE  +G +L  R  R L L+E    
Sbjct: 11  NEMAVFVRVVETGSFSEAARQMAVTPSAASRAVARLEKALGQRLLQRSTRKLRLSENAQD 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVK---PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              V       L   Q  L+ S  +   P G LR++    +G+ L+  ++ EFL  YP +
Sbjct: 71  ---VFEHCRDMLNAAQAALEASGRQGEEPRGTLRVSVPKAIGRALVHPHMPEFLERYPQV 127

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + L L+++ +D+  +  D AIR+  +P     L+ R+L+ I     A P YL     P 
Sbjct: 128 DVLLRLEDRYMDLYDEQIDLAIRITDQP--PPGLMGRRLLRIDHLLCATPEYLAAHGVPA 185

Query: 182 SIQELDKHNLITFGD 196
             Q+L  HN I  G+
Sbjct: 186 QPQDLKAHNCIYLGE 200


>gi|221211290|ref|ZP_03584269.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168651|gb|EEE01119.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 310

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 3/190 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE      GK+R+++T D G+N L   L EF   +PD+   L 
Sbjct: 67  NCCRQALQALDDADAMLQEGRNVVGGKVRLSSTSDFGRNQLLDWLDEFTARHPDVTFSLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R+L        AAP +++    P    +L 
Sbjct: 127 ASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFIERYGTPADPNDLA 185

Query: 188 KH--NLITFG 195
           +   N+IT  
Sbjct: 186 RFPCNVITIA 195


>gi|171316402|ref|ZP_02905621.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171098435|gb|EDT43238.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 291

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 20/296 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L+ F  VA SG  + AA +L +S+S +SR++  LE+++G++L  R  RG  LTE 
Sbjct: 1   MDIEELQTFVEVADSGGVSPAARRLGVSKSIVSRRLLRLESDLGVQLLARTTRGSALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118
           GS      + V       +I+    ++ P+    G+LRIA  +  G   L   L +    
Sbjct: 61  GSAFRDYAARV-----VAEIDAARETISPAGELRGRLRIAAPLTFGPTHLAPVLADMARR 115

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P + I     ++ +D+  D  DCAIR+   +  S+LI + +  I     A+P Y++   
Sbjct: 116 HPLLHIHTCYSDRMVDLVGDGYDCAIRIGY-LPDSNLIAKCVGPIDGKLVASPGYIEANG 174

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P +  EL  H  +  G    +  +  N   TV RP G       + ++ ++I+   V G
Sbjct: 175 APETPDELLGHEALMQGTESWR-FKHGNKTITV-RPQGR-----FKADNAIAIVAAAVAG 227

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G+A LPD +      +  LV +M     P+  +Y   P+    + K++   + + 
Sbjct: 228 LGLAWLPDGVTAPYVASGELVPVMRRFPPPTAGIYVVRPQGQNPSAKIQMLTDLLI 283


>gi|150395656|ref|YP_001326123.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027171|gb|ABR59288.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 327

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 134/296 (45%), Gaps = 28/296 (9%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF    R  +FT AA +L ++Q+++S  I GLE ++G+ LF+R  R + LTE G + H  
Sbjct: 19  VFEAAGRHQNFTRAAGELGMTQAAVSYAIRGLEDQLGVPLFHRVHRAVELTEAGERFHAD 78

Query: 70  TS----EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            S     +    E  + + +E++V  +     A+   L +      L+E L   P+I ++
Sbjct: 79  VSVGLGRIRKSAEDIRAKGRETNVTLAASTAFASMWMLPR---LARLREDL---PEIDLR 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQ-----SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    +D+D+  +     IR   P Q     ++ L    +  +  H Y   H L     P
Sbjct: 133 IQTSVRDLDLDEEPIPLGIRGGDPNQWPRYHAAVLADEVIQAVATHVYIETHGL-----P 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLG 238
            S  +L +HNLI   + + +  +   W A+     P    R   L +N Y+ ++Q  + G
Sbjct: 188 RSPADLIRHNLIHLEEPVRRACDWTEWFASAGLTYPAQGKR---LAINDYVLVIQAVLAG 244

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GIAL  +++      +  LVR+ E V+      Y  +P +     + +  R+++ 
Sbjct: 245 EGIALGWEHLTARQVRSGALVRVGEHVLKTGQAFYVVWPRSRDLNSQARRVRDWLL 300


>gi|116250971|ref|YP_766809.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255619|emb|CAK06700.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 296

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 123/288 (42%), Gaps = 26/288 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR G F  AA      ++++SR+++ LE+ + ++LF R AR L LTE+G  L   T
Sbjct: 9   FNLVARHGGFGKAARATGRPKATLSRRVAELESGLDLRLFERGARNLKLTEEGRALFERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L+ T   +     KP G+LRI+  +   Q  +      F L YP++++++  ++
Sbjct: 69  GALLAELDETAAAIASGGQKPKGRLRISAPLHFSQTAMGRIAAGFTLQYPEVRLEVTSED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  IR+  P    SL+ R  +   +   A+P   +               
Sbjct: 129 RPVDMIEEGYDLVIRV-NPDPDESLVGRAFLRDRLVVVASPDLPRP-------------- 173

Query: 191 LITFGDLIPKCMEDFNWLAT--VDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALLP 245
             T G   P          T  V  P G   I     L + + + +      G G   LP
Sbjct: 174 --TGGHAAPGVARGAGEAQTWPVKTPGGRSAIRIEPVLTLATLIMVRDAVRAGVGAGRLP 231

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +V     +  LV    D+  P   ++  YP     + ++ AF +F+
Sbjct: 232 ISLVSHDLADGTLVN-WGDIDGPEIALWTLYPSRRLLSARVSAFLDFL 278


>gi|91779823|ref|YP_555031.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692483|gb|ABE35681.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 302

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 15/297 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L++F  VAR  SF+ AA +L +SQS  SR ++ LE E+G+ L  R  R +  TE+
Sbjct: 1   MDINQLKIFSRVARLKSFSGAARELSISQSQASRAVAELEQELGVSLLARTTRAVIPTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++       V  +LE  +  ++   ++  G LRI      G   +   +  F  ++  +
Sbjct: 61  GTEYLARIEPVLDQLEDAEQSVRRGELR--GTLRIGMPTSAGVREIIPLIPPFAEMHAKL 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQ+IL ++  D+  D  D A+R+   +  S+   R L T      A+P YL+    P +
Sbjct: 119 SIQIILGDQKQDLVRDAVDVALRM-GTLPDSNATARLLTTYPRLIVASPGYLERFGTPGT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
             EL  H+++      P       W  T  R   +  I+    +  N    ++     G 
Sbjct: 178 PSELQGHHVVHG----PAGGVATAW--TFSRDGADESIAVRPTISFNDNEGVVAATAAGM 231

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIA +  +  +   +   LVR++         VY  YP         +AF +++ ++
Sbjct: 232 GIASIGLWACRRELEEGRLVRLLSGWDMVPTRVYAYYPLGKATRYPARAFIDYLSVR 288


>gi|238790916|ref|ZP_04634665.1| LysR-family transcriptional regulator [Yersinia frederiksenii ATCC
           33641]
 gi|238720984|gb|EEQ12675.1| LysR-family transcriptional regulator [Yersinia frederiksenii ATCC
           33641]
          Length = 301

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 132/294 (44%), Gaps = 17/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR GS + AA +L ++  S+S+ +  LE  +G  LF R  R + LT+ G 
Sbjct: 6   YNQIRIFQSIAREGSISAAARKLEITPPSVSKSLKLLEQHIGHPLFARTTRRIELTDAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T      LE +   +++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTEAAVDTLEKSLENIRDQNQEPSGLVRITLSRFAYLLILKPVMAAFCQKYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  ++I     D  IR    ++   + ++ +       YA+  YL     P +  
Sbjct: 126 EISVYDGTVNIIEGRFDLGIRFGDILEGGVVARQLMKPFREGLYASSAYLAQFGTPTTPS 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L +H LI +       ++P  ++D     TV+ P        L  N    +      G 
Sbjct: 186 DLYQHKLIGYRFITNNRILPLMLDDQGEQLTVEMP------GQLISNDIDVMADGIRSGL 239

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  L + I +  P+    + +ME        VY  YP   KN GK K  +  I
Sbjct: 240 GIGRLFEPIHRLQPDKEEFLPVMESYWKTYPPVYLYYP---KNAGKTKRVKTLI 290


>gi|94309928|ref|YP_583138.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353780|gb|ABF07869.1| Transcriptional regulator, LysR-family [Cupriavidus metallidurans
           CH34]
          Length = 300

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 132/298 (44%), Gaps = 27/298 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK- 65
           +L+ F   AR  SFT AA +LH++Q ++S+Q+  LE  +G++LF R  + L LT  G + 
Sbjct: 10  ELQAFEAAARHNSFTLAARELHVTQGAVSKQVRSLEAFLGVELFERVRQRLMLTGAGERY 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R+   + +++E   +EL     +  G L IA+   LG   L   L +F   +P++ ++
Sbjct: 70  LERIRPSL-NEIEAASVELIARKGR-GGILHIASMPTLGAKWLIPRLPQFFARHPEVTLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +   +  D S    D AIR    +   SL        +M        L  CR  L  QE
Sbjct: 128 FVPHAQGYDFSQPDLDAAIRFGDGVWPGSLAD------YMTGR---EVLPVCRPGLLAQE 178

Query: 186 -----LDKHNLITFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                     L+ +  L    +P+   D  WL+ +     +   S  + + +  + Q  V
Sbjct: 179 SGGAVASAEGLLRYPLLHHTTVPEAWPD--WLSELGVSTRQA-WSGARFDQFSLLTQAAV 235

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G GIAL+P  ++++      LV      +      Y CYPE   +   L+ FR ++ 
Sbjct: 236 SGLGIALIPRCLIEEEIATGTLVVAHAARVLAKKGYYLCYPEQKAHLPALQTFRAWLM 293


>gi|206579547|ref|YP_002239365.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288936216|ref|YP_003440275.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206568605|gb|ACI10381.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288890925|gb|ADC59243.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 313

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 144/300 (48%), Gaps = 31/300 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F  AAE+L +S + +S+++S LE  + + L +R  R +T+TE+G +
Sbjct: 8   NDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVVLLHRTTRRVTITEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    EL +    P G LRI ++   G+ ++   L    L YP ++++
Sbjct: 68  IYEWAQRILQDVDEMMDELSDVRQVPQGTLRIISSFGFGRRVVAPALSALALQYPQLELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + ++ +D+  +  D  IR+   I + +LI R+L   H    A+P +L     P  + +
Sbjct: 128 FDVQDRLVDLVNEGVDLDIRVGDDI-APNLIARQLAANHRVLCASPQFLARHPPPKQLSD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS------CLQVNSYLS------IMQ 233
           L           +P C+     +   D P G  ++        ++V   LS      + Q
Sbjct: 187 LAA---------LP-CLV----IKERDHPFGIWQLHSKEGQHAIKVTGPLSSNHGEIVHQ 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +C+ G GIAL   + V++N    +LV ++ +   P+  V+  Y   L  + K++    F+
Sbjct: 233 WCLDGQGIALRSWWDVRENIASGHLVHVLPEFFQPA-NVWAVYVSRLATSAKIRTTVEFL 291


>gi|300721474|ref|YP_003710749.1| putative LysR family transcriptional regulator [Xenorhabdus
           nematophila ATCC 19061]
 gi|297627966|emb|CBJ88515.1| putative transcriptional regulator (LysR family) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 300

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 133/278 (47%), Gaps = 15/278 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D     +F+ +   GS   AA+ LHL  S  SR+++ LE ++  +L  R  R L+LT
Sbjct: 1   MNHDLTLWHLFFRIVERGSLIKAAKDLHLDPSVASRRLAALEHQLKAQLINRSTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  +     +  +++    ++   S+   GK++I   ++ G++ +   L  F L  P
Sbjct: 61  AAGTVAYEQMRPLLDEIDGVLSDINNKSL--VGKIKITAPVNFGEHYVTQWLTLFQLQNP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI   L+L ++ +D+  +  D AIR+ + + +S+LI +KL  +     A+P YL     P
Sbjct: 119 DITFDLVLSDQCLDLRQEGIDLAIRIGE-LPASTLIAKKLGNMSGVLCASPEYLLKHGTP 177

Query: 181 LSIQELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCV 236
              Q+L+ H  + +    +  P  ++      + DR +    +S    +N+  +I Q   
Sbjct: 178 KHPQDLNYHKSVIYSLRQNTSPTRLQ-----LSRDRVVEHVELSGSFYLNNVGAIYQAVC 232

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYF 271
            G GI   P ++  +   N  LVR++ D   P+  ++ 
Sbjct: 233 HGVGIHAGPAWLFNEAILNKKLVRLLPDWQLPTLPIHL 270


>gi|270160348|ref|ZP_06189000.1| LysR family transcriptional regulator [Legionella longbeachae
           D-4968]
 gi|269987132|gb|EEZ93391.1| LysR family transcriptional regulator [Legionella longbeachae
           D-4968]
          Length = 189

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 95/174 (54%), Gaps = 1/174 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L +F +V ++ SFT AA +  +S++ +S++IS LE+ +GIKLF R  R L+LT  
Sbjct: 6   LNLNDLAIFALVVKNQSFTQAALEAGISKAWVSQKISQLESVLGIKLFKRTTRSLSLTIG 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  ++   +  L+E +  PSGKL I      G  LL   L EF  LYP I
Sbjct: 66  GKILFEHCQIMLQEVANAENHLREYAKTPSGKLVITCPEITGLELLPTLLSEFNSLYPQI 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           + +LI+ ++ +D++    D A R  K +  S+L+ R +  +     A+P YL +
Sbjct: 126 RTRLIITDQLMDLTQQGIDFAFRTGK-LADSTLVSRYIGKVSRCLVASPAYLSS 178


>gi|168241240|ref|ZP_02666172.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194447330|ref|YP_002045721.1| regulatory protein LysR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194405634|gb|ACF65853.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205339653|gb|EDZ26417.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 301

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVSRPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|87118518|ref|ZP_01074417.1| putative transcriptional regulator, LysR family protein
           [Marinomonas sp. MED121]
 gi|86166152|gb|EAQ67418.1| putative transcriptional regulator, LysR family protein
           [Marinomonas sp. MED121]
          Length = 312

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 145/306 (47%), Gaps = 34/306 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L VF  VAR  SF+ AAE+L++SQS+IS QI  LE  +G  LF R  R L+L+ +G   L
Sbjct: 9   LPVFEAVARLNSFSKAAEELNVSQSAISHQIRLLEDYLGEALFIRQGRQLSLSSEGKHYL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVK--PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             V++ +      +QIE   + +K   +  LRIA         L   L +    YP  ++
Sbjct: 69  DNVSASL------SQIERASNHLKGLQNSHLRIAVYSSFAVYWLIPRLTDLQRRYPHTEV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL--- 181
            + + N D ++S    DC I +    +  +     L +  +    +P +    +  L   
Sbjct: 123 SIEMLNADPELSDRVGDCFITIENNKRGFTF--EHLYSERLFPVCSPEFYAQIQAELIKV 180

Query: 182 SIQELDKH-----------NLITFGDLIPKCMEDFN-WLATVDRPI-GEPRISCLQVNSY 228
           +  +L+ H            LIT   +  K  ED+  W A +++ + GE +       S+
Sbjct: 181 TDDDLETHLIKHPEWITQFPLITTHSIFNKYAEDWRLWFAAINKKLPGEVKFHNF---SH 237

Query: 229 LSIMQYCVLGS-GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           L + +   L S GIAL+ DY++ ++   P+LVR+    +  +   YF Y  + ++  +++
Sbjct: 238 LLLGKEAALHSYGIALINDYMINEDDNVPSLVRLPCHHVNSNCDFYFSYKNSRRHEPEIR 297

Query: 285 AFRNFI 290
           A R++I
Sbjct: 298 AIRSWI 303


>gi|86144474|ref|ZP_01062806.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85837373|gb|EAQ55485.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 298

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 127/286 (44%), Gaps = 29/286 (10%)

Query: 3   FDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++++ LE  +G +L  R  R ++ TE
Sbjct: 1   MDWILNVKSYVKVVEEGSFNGAARKLNTTSSAISKRVNWLEERIGTQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    +     ++   E +  +  P+G L+I  TI +G   L   + +FL  YPD
Sbjct: 61  AGALFYLRAKDQLDNWQSIIDETRSVNQTPAGLLKIGATIAVGSKFLVQYMDDFLEKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++QLI         +       R  + + S S  +  L       YAAP YL     P+
Sbjct: 121 IKVQLITTTPGQLPELGLDLVISRELEQLNSLSFKKTPLFEHKASFYAAPSYLAKHGYPI 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVL- 237
           + Q+L++HN + +G                +RPI E  ++  Q   +N   +      L 
Sbjct: 181 NEQDLEQHNSLIWG----------------ERPIREVTLTKGQRITLNGNFATTNPEALF 224

Query: 238 -----GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
                G G+ L    ++K++     LV ++ ++      VY  YP+
Sbjct: 225 HAAKRGMGVLLTIKAMIKEDLKQGTLVPVLPNITADEVMVYAYYPK 270


>gi|167614909|ref|ZP_02383544.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 297

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 134/303 (44%), Gaps = 25/303 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE +  ++L  R  R  T+TE G
Sbjct: 3   DLNDLYYFVKVVEHGGFTQAGRALGVPKSTLSRRIAALEAQYDVRLLQRTTRHFTVTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E  +  ++    +P G +R++    L +  + G +  F+ ++P +Q
Sbjct: 63  REFYDRCLGVLVEAEAAREVIERKHAEPQGIVRLSCPTALLEYRVSGLVARFMAIHPKLQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAPH L     P S
Sbjct: 123 VHLEATNRRVDLLSEGIDLALRVRFPPLEDSGLVMRVLGDSPQRLVAAPHLLGGRDLPTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235
             EL     + +G   P+     + L  +  P G        PR      +   ++    
Sbjct: 183 PDELAGVPSVDWGP--PR-----HHLWQLVGPQGVEAQLRHHPRFIT---DDMHALRDAA 232

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291
           + G GIA LP  +V+D   +  LV ++   +     ++  +P      G L   R  I F
Sbjct: 233 LHGVGIAQLPCMVVEDDLRDGTLVDVLPGWVPKGGVIHAVFP---SRRGLLPRVRLLIDF 289

Query: 292 LKA 294
           L A
Sbjct: 290 LAA 292


>gi|114327824|ref|YP_744981.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315998|gb|ABI62058.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 310

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 128/274 (46%), Gaps = 17/274 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RV+  V   GS + AA  L + Q ++S +I  LE ++G +L  R+ R +++T+ G+  +
Sbjct: 7   MRVYVRVVERGSMSAAARDLGIGQPAVSERIERLEVDLGTRLLRRNTRAISVTDVGAVFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                     +     +QE  +   G LRIA    LG+ +L   L +    +P++++ L+
Sbjct: 67  ERCKIAIEAADDALASVQED-MPLRGTLRIAAPAGLGEVVLPSILLDLRNHHPELKVDLV 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D + +  D ++RL  P +  + + RKL  +     A+P YL+    P++  EL 
Sbjct: 126 LNDRIVDPTTEGVDISLRLGDPGE-GNFVARKLGHVSRVLVASPGYLERYGAPMTPAELF 184

Query: 188 KHNLITFGDLIPKCMEDFN----WLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H       L       FN     L T D R    P    + ++++  +    + G  I 
Sbjct: 185 RHPFARVSGL-------FNNGRLPLQTADGRLTSAPVDIVMTMSNWRPLHAILLDGGAIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           +L + +  D+     L RI+ D   P F ++  Y
Sbjct: 238 VLQEPVCSDDLAAGRLRRILPDFGLPGFDLHLLY 271


>gi|167647200|ref|YP_001684863.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167349630|gb|ABZ72365.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 305

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 122/288 (42%), Gaps = 17/288 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +A   SF  AA+ L +S+SS+S  +  LE  +G++L  R  R +  T+ G +L 
Sbjct: 9   LTAFSAIAEHRSFRAAADALGVSRSSLSHAMRALERNLGVRLLNRTTRSVFPTDAGQRLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L+    E+ E   +PSG+LRI       + LL+  + +FL  +P +++ ++
Sbjct: 69  ARLGPALRDLDAALDEVAEDRGRPSGRLRINANEIATRRLLRDVVPQFLARHPAVELDIV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D + IDI  +  D  IRL +      +  R    +   A A+P Y  +   P +  +L 
Sbjct: 129 TDGRLIDIVAEGFDAGIRLYETTPKDMVAVRLGDDVRFLAVASPSYFADHAPPATPDDLQ 188

Query: 188 KHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H  I      G       E F     +D P        L ++    ++   + G G+A 
Sbjct: 189 HHQCIRHRLPSGKRYRWEFERFGQEVAIDAP------GSLTLDHTGLMVDAALDGLGLAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAF 286
           +PD   +       L+ ++ D     P   +Y  YP +      L+AF
Sbjct: 243 VPDLAAEPYLKTGELIAVLTDWCPSIPGLCLY--YPGSRHVPASLRAF 288


>gi|319782655|ref|YP_004142131.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168543|gb|ADV12081.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 294

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 1/162 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR G F  AA      ++++SR++  LE+ + ++LF R AR L LTE+G  L   T
Sbjct: 9   FNLVARHGGFGKAARATGRPKATLSRRVGDLESSLDLRLFERGARNLKLTEEGRALFERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L+ T   +     +P G+LRI+  +   Q  +      F L +P++++++  ++
Sbjct: 69  GALLAELDETAAAIASGGQRPKGRLRISAPLLFSQTAMGRIAAGFALKFPEVRLEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
           + +D+  +  D  IR+  P    SL+ R  +   +   A+PH
Sbjct: 129 RAVDMIEEGYDLVIRV-NPDPDESLVGRAFLRDRLVVVASPH 169


>gi|190575822|ref|YP_001973667.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190013744|emb|CAQ47379.1| putative LysR family transcription regulatory protein
           [Stenotrophomonas maltophilia K279a]
          Length = 301

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 131/275 (47%), Gaps = 13/275 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F   ARSGSFT AA+ L +S+S++ + ++ LE  +G +LF+R  R + LT  G  
Sbjct: 8   NGLVTFVTTARSGSFTEAADALGISRSAVGKAVARLEARLGGRLFHRTTRRIALTTDGEA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   +    ++   +  L  + + PSG+LRI      G+ ++   L      YPD+Q+ 
Sbjct: 68  YYASCAAALEEISAAEACLGSAGL-PSGRLRIDMPSSFGRLVVLPVLLRLCRQYPDLQLT 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +  +D   +  D  IR     Q+  L+ R+L    +   A+P YL+    P +++E
Sbjct: 127 MTFTDHFVDPIEEGIDLLIRFGGLHQAEHLVARRLGRQRLVTCASPEYLQAHGVPRTVEE 186

Query: 186 LDKH-NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H +++ F     +  +   W    +   G   P  +  Q+N   ++++  + G GI 
Sbjct: 187 LAQHRSIVGF-----RHGQPVWWRIGSEEDEGTFIPN-APYQLNDGDAVIEAAIAGLGIC 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            +P  +V+   D+  L  +++  +     ++  +P
Sbjct: 241 QMPVSLVRRHLDSGALRSVLDAHMQRHIDIHALWP 275


>gi|295698924|ref|YP_003606817.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438137|gb|ADG17306.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 302

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 98/193 (50%), Gaps = 3/193 (1%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR    F  V  +G+F  A E+L +++S+I++ ++ LE  +G++L  R  R L+LT++
Sbjct: 3   DRLRGIAEFVDVVDAGTFAAAGERLGVTRSAIAKIVARLEQRLGVRLLQRTTRHLSLTDE 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     V  +L   +  L+     PSG+LRI   +  G+  +   + + +  +P +
Sbjct: 63  GHAYYEQCRRVMAELGAVEATLEAGRRDPSGRLRITAPVLFGRQCVAPVMLKLVERHPLL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++   ++  D+  D  D A+R+      ++L+ R+L    M   A+P +L     P  
Sbjct: 123 DVEMSFSDRVSDLVEDGFDIAVRIGPLPDHATLVGRRLGVQRMGICASPAWLDRHGRPSG 182

Query: 183 IQELDKHNLITFG 195
           + EL  H  I +G
Sbjct: 183 LAELGSHVSIAYG 195


>gi|161618332|ref|YP_001592219.1| LysR family transcriptional regulator [Brucella canis ATCC 23365]
 gi|254703714|ref|ZP_05165542.1| LysR family transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|161335143|gb|ABX61448.1| transcriptional regulator, LysR family [Brucella canis ATCC 23365]
          Length = 304

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 99/194 (51%), Gaps = 4/194 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S + +S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVVSNRIKELEKHLGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 60  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 120 DIEVRLRLSDHEVDIMSEGVDVAFKL-GVLENSNLRMRGIMNCERVVCAAPQYLERHGTP 178

Query: 181 LSIQEL--DKHNLI 192
            S + L  D+H+ +
Sbjct: 179 QSPEALLSDRHHCL 192


>gi|157963265|ref|YP_001503299.1| DNA-binding transcriptional regulator DsdC [Shewanella pealeana
           ATCC 700345]
 gi|157848265|gb|ABV88764.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 323

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 95/185 (51%), Gaps = 6/185 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S+   KL  F VVAR  SF+ AAE+L +S S++S +IS LE+E+G KLF R  R + LTE
Sbjct: 26  SYQLAKLHTFEVVARHQSFSLAAEELCVSPSAVSHRISALESELGFKLFSRFHRRIELTE 85

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L+    +    L     E++   V  SGKL + +   + Q  L   + +F   YP 
Sbjct: 86  DGKRLYSKLKDSLKSLNQEVFEIKNQEV--SGKLTVYSRPSIAQCWLVPKIADFSRQYPA 143

Query: 122 IQIQLILDNKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           I I ++  N++++ +  + D AI    R R  +    L+   ++ +    YAA H L   
Sbjct: 144 ISINILTGNENVNFNSFHIDLAIYYDNRPRSKLFCQHLMDETIMPVCSPEYAAEHDLIGK 203

Query: 178 REPLS 182
            E LS
Sbjct: 204 PEHLS 208


>gi|94310832|ref|YP_584042.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354684|gb|ABF08773.1| transcriptional regulator (LysR family) [Cupriavidus metallidurans
           CH34]
          Length = 324

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 125/298 (41%), Gaps = 27/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSFT AA Q+ L+ + +SR +S LE  +  KL  R  R L LT  G +  
Sbjct: 13  MTAFLRVVDAGSFTAAAAQMALTTAQVSRLVSELEKRLQAKLLQRTTRRLALTSVGERYA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +  +  ++V+P G+LR+      G+  +   +  +   YP + ++  
Sbjct: 73  DQCRSILELVAEAESGVGGANVEPDGRLRVRCMAAFGERYVVPLVSMYCARYPKVAVEYG 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  +  D ++ L + +  S+L+ + L   +    AAP YLK    P S++EL 
Sbjct: 133 TSQYAPDLIAEGVDASVYLAQRLSDSNLVAQALGETYGLLCAAPSYLKRRGTPKSVEELA 192

Query: 188 KHNLITFGDLIPKCMEDFNWLA-----TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H  +   +  P    D+         T+D   G P +     ++   ++     G GIA
Sbjct: 193 AHACLRIAN--PSTTPDWTLTDGTRSFTLD--AGGPLVG----DNPGVVLHAASSGLGIA 244

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LLP +   D   N  L  ++    +P+  VY   P            R F+  K R W
Sbjct: 245 LLPIFSAVDHIRNGELRVVLPAWRSPAIGVYLMLPS-----------RKFLEAKTRAW 291


>gi|253997143|ref|YP_003049207.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253983822|gb|ACT48680.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8]
          Length = 301

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 122/281 (43%), Gaps = 11/281 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR+F  VA S +F  A+ +L +S  S++R I  LE  +G  LFYR  R  T+T
Sbjct: 1   MQNQLEMLRIFKAVAESSNFKEASIRLGISPQSVTRAIKELEERLGEPLFYRSTRNTTIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLL 117
           E G ++   + EV  +++T   +L + +  P    G ++I      GQ  L   L  F  
Sbjct: 61  EFGKQMALKSEEVLEQVDTL-FQLNQHADTPQAIEGTVKITMPNTFGQQYLLPALTAFAK 119

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP+IQ+ L   N   ++  D  D  +R+     ++  + R++  I  H   AP  +   
Sbjct: 120 EYPNIQLDLRFSNLIDNVVADQMDIGVRIGF-FSNNRNVARRVNEIKFHIVGAPALIAKT 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P   Q+++    + +  LI +           D P   P       +   + +   + 
Sbjct: 179 GAP---QQVNDLCTMPYTGLIDQNTGRMWSWTFADEPDCFPSAPAFITDDIKAELAAVLA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
           G G   LP++I +    +  LV ++ED     + VY   P+
Sbjct: 236 GIGYGQLPNFICEQYIKSGQLVTVLEDQSPAPWGVYVYRPQ 276


>gi|330992725|ref|ZP_08316669.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter
           sp. SXCC-1]
 gi|329760203|gb|EGG76703.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter
           sp. SXCC-1]
          Length = 325

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 135/293 (46%), Gaps = 16/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  +    SFT AAE ++L +S+ +  I  LE  +G++L +R  R ++ T +G  
Sbjct: 32  DVMRLFMRIVDRESFTQAAEDMNLPRSTATDVIKALEARLGVRLLHRTTRQVSPTPEGET 91

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    +  ++E  +      +V+P G LRI     L ++ L   L  F   YPDI++ 
Sbjct: 92  YYRRCRHIVAEIEDAEAAF--GTVRPKGTLRIDVHGTLARHFLLPALPAFFAAYPDIELH 149

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D   +  DC +R+ + ++ S ++ R+L  +     AAP YL+    P     
Sbjct: 150 MSEGDRLVDPVREGMDCVLRVGE-LKDSGMVARQLGMLEEVTLAAPAYLEAHGVPTHPDA 208

Query: 186 L-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYCVLGSG 240
           L + H ++ F   +   +    ++  +D   G+ R   L     VN+  S +     G G
Sbjct: 209 LAEGHFMVGFQSSLRGRILPLEFV--ID---GKQRDMVLPLHMAVNAAESYVSAARAGLG 263

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +P Y    +     LV I+      S  V   YP   + + +++ F +++
Sbjct: 264 IIQIPRYHATHDLMAGTLVDILAAFPPTSSPVALLYPHNRQMSPRVRLFIDWV 316


>gi|212633326|ref|YP_002309851.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212554810|gb|ACJ27264.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 465

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VA  GS T AA +L +S +  S  +  LE E+G  LF R  R L LT+ G +
Sbjct: 4   NDLTLFVRVADCGSLTAAAVELDISTAVASAGLKRLEKELGTSLFIRSTRSLRLTDAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      L+  Q  +  S  + SG + +A   D+G+N++   L +FL  YP++ ++
Sbjct: 64  YLIHCRSALADLDMGQRAITSSLAEISGSISLAVPSDVGRNVVLSWLDDFLSEYPELNLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +   D   D  D A+R  KP + SSL+  K+        A+P Y++      S+++
Sbjct: 124 LHIGDNLSDFYRDKIDVALRSGKP-KDSSLVAFKICNSSRVLCASPEYIERVGAVTSLEQ 182

Query: 186 LDKHNLITF 194
           L +HN + F
Sbjct: 183 LQQHNCLFF 191


>gi|153802938|ref|ZP_01957524.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|124121506|gb|EAY40249.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
          Length = 313

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 15/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G  
Sbjct: 5   NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ ++
Sbjct: 65  FLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  D+  +  D AIR  +P  S+ +      +      A+P YL      L   +
Sbjct: 125 LDLSDRLTDMYANPVDIAIRYGQPADSNLVAMLLCDSNERVLCASPEYLAAHPPILHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + F  ++   + +  W+ + +   GE     +Q N   +    + +  V G GI
Sbjct: 185 LQHHNCLCF--MLADTLHN-KWILSRN---GETHSVVVQGNPACNDGEVVHRLAVKGKGI 238

Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A   L D I +D  +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K 
Sbjct: 239 ANKSLMD-ISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREKG 294


>gi|118593959|ref|ZP_01551314.1| transcriptional regulator [Stappia aggregata IAM 12614]
 gi|118433465|gb|EAV40137.1| transcriptional regulator [Stappia aggregata IAM 12614]
          Length = 294

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  G+ +  A +L + QS+++R +  LE  VG+ L  R  R +TLTE+G   +
Sbjct: 1   MRTFVRVAERGNLSAVARELGVGQSTVTRHVQELEDAVGVPLLSRTTRRVTLTEEGGGYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    + +  E + S    +G +RI+ T  LG   +  ++  F  L+PD+ I L 
Sbjct: 61  TNCVQILRLTDRSVEEARTSRSALAGSIRISCTAALGVLQISKSIFAFQDLHPDVAIDLS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  +  D A RL  P+  SS+  R L        A+P YL     P   QEL 
Sbjct: 121 LTDERIDLVQEGVDMAFRL-GPLTDSSMKLRALGESRRLLVASPDYLARHGRPTVPQELV 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I   ++    + D          +        +V+  L   +  + G GIA    +
Sbjct: 180 GHKAIRMSNVAGSDVLDLQGSDGSRHSVSFD--GNFRVDHGLGAREALIAGRGIAPAHHW 237

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +V D      L  ++ D   PS  +            +++    F+ ++
Sbjct: 238 LVDDLLRQGRLETVLPDYSPPSVPLSLLIVPERSGIARVRLLVEFLSVR 286


>gi|86144943|ref|ZP_01063275.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222]
 gi|85837842|gb|EAQ55954.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222]
          Length = 300

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 22/298 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  +++VF  +  SGS T AA++L LS+S +S  + GLE  +G+KL  R  R  +LT
Sbjct: 1   MKNELHRMQVFAQIVESGSITKAADKLDLSKSVVSHHLQGLEQHLGVKLLTRTTRRQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G + ++   E+   +   + E++ES    +G + I +   L  +L+   + EF+  +P
Sbjct: 61  DAGQRFYQRCLEMRKLMSLAEEEVRESCSDFAGTITITSPHTLMTHLIGPAMCEFMKSHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            I+ QL+ ++  +D+   Y D ++ +   P  +S  I  KL  +H      P YL   + 
Sbjct: 121 RIEPQLLANDMRVDLIEKYIDLSVTVGALPDSTSRAI--KLGELHQVLCCHPDYLTKVQI 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV------NSYLSIMQ 233
           P  I   D    ++  D I    E  N   + +  I + ++S  Q       +S  +I  
Sbjct: 179 PQPITPSD----LSQYDYIANQWEGINSQRSFE--INKGKVSTYQFRASRIGDSVPTIRM 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAF 286
             + G GIA LP   ++++     LV I+  + V+  SF V   Y   L+   +++AF
Sbjct: 233 MALNGLGIACLPKQAIEEDLKKGTLVNILPKDQVLKASFYVVHNY--GLQVPARIRAF 288


>gi|126175018|ref|YP_001051167.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|153001347|ref|YP_001367028.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|160876066|ref|YP_001555382.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|125998223|gb|ABN62298.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
 gi|151365965|gb|ABS08965.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
 gi|160861588|gb|ABX50122.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315268262|gb|ADT95115.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 312

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 16/268 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +   L+ F  V  S S++  A +  +S S ISR IS LE  +G +LFYR+ R +  TE
Sbjct: 6   SINMRALKFFIGVYDSKSYSVVARKEGVSPSMISRVISQLEDSLGQQLFYRNTRAIIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +L   + EL + +++P G +RI   +  GQ  +   L  FL  YP 
Sbjct: 66  SGRIFIEYARSMAEQLNEVRNELLDRTIEPKGLIRINAPVFFGQRHIAPWLAGFLRRYPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L   +  ID  +  AD   R+   +  SSL  R L +   H  A+  Y+     P 
Sbjct: 126 VQVELTQTDDYIDPHVSAADIIFRIGT-LVDSSLHSRILGSQTYHLAASKAYIALHGMPT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-----WLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              +L  H  + +     +    FN     WL        +P    L  N+  +++   +
Sbjct: 185 EPADLKNHQCLVYSGSSGQNRWFFNKNKTTWLH-------QPITPILTSNNAETLLIAAL 237

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMED 261
              GI L PD+++ D   N  L+ ++ D
Sbjct: 238 NDMGIVLFPDWLIGDSLKNGQLISLLTD 265


>gi|264679599|ref|YP_003279506.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210112|gb|ACY34210.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 311

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 104/191 (54%), Gaps = 1/191 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  V R  SF  AA   + S + +S++I  LE E+G+KL +R  R + +TEQG +
Sbjct: 5   EDLRVFTTVVRKASFAEAAAAHNASPAFVSKRIRLLEQELGVKLLHRTTRRVAVTEQGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +  ++E    E+  +  +P G LR++T+   G+N++   L + +  YP +Q++
Sbjct: 65  VYHWAQRILDEVEHLLQEVDVTRRQPRGLLRVSTSFGFGRNVVAPALSQLIAQYPALQLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R L   H    AAP Y++    P ++ E
Sbjct: 125 LEVFDRIVDVAAEGFDLDVRVGDEI-APHLIARHLADNHRVLCAAPAYVQRRGSPRTLDE 183

Query: 186 LDKHNLITFGD 196
           L  H+ +   +
Sbjct: 184 LAAHDCLVIKE 194


>gi|213583244|ref|ZP_03365070.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 296

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 3/243 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G + +
Sbjct: 2   MQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRRYY 61

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ L 
Sbjct: 62  EECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPELELILC 121

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +L 
Sbjct: 122 SSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDDLQ 181

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +  
Sbjct: 182 KHHAV--GYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLIRVAS 239

Query: 247 YIV 249
           Y+V
Sbjct: 240 YLV 242


>gi|206562427|ref|YP_002233190.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038467|emb|CAR54425.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 309

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 95/184 (51%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  SGSF  AA +L +++S++++ ++ LE  +G +L  R  R L LT++G   +   
Sbjct: 11  FVDVVESGSFAAAALRLGMTRSAVAKIVARLELRLGARLLQRTTRQLGLTDEGFVYYEQC 70

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  T+  L     +P+G++RI+  +  G+  +   ++  +  +P ++I +   +
Sbjct: 71  RRLLAELGETEAALDAGRREPAGRVRISVPVLFGRQCVAPVVRRLVERHPRLEIDMSFSD 130

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D+  D  D A+R+ +   +S+L+ RKL    M   A+P YL     P  ++ L  H 
Sbjct: 131 RVADLVNDGFDLAVRIGELADTSALVGRKLGVQRMGICASPDYLARHGRPSGLEALASHV 190

Query: 191 LITF 194
            I +
Sbjct: 191 GIAY 194


>gi|146284460|ref|YP_001174613.1| transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145572665|gb|ABP81771.1| probable transcriptional regulator [Pseudomonas stutzeri A1501]
          Length = 305

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 137/280 (48%), Gaps = 16/280 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D++  F  V  SGS + AAEQL  + S +SR +S LE ++ + L  R  R L LT
Sbjct: 6   MKTNLDEMLAFVSVVDSGSISAAAEQLEQTASGVSRALSRLEDKLAVTLLRRTTRRLELT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E  + ++      P+G+LR+ T      +++   + +F   YP
Sbjct: 66  EEGEAFLAQARRILASVEEAEEQMALRRQAPAGRLRVNTASPFMLHVIVPLIGDFRARYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D++ +D+     D AIR+  P+  SSL  R L        A+P YL     P
Sbjct: 126 LIELELHSDDRIVDLLERRIDLAIRI-GPLPDSSLHARPLCHTTRRVLASPAYLARHGTP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RIS-CLQVNSYLSIMQYCVLG 238
             +++L +H+LI F +  P  + D+     +   +GE  RI+  L+ +S  ++ +  + G
Sbjct: 185 QKVEDLAEHSLIGFTE--PDRLNDW----PLRHALGESWRINPALRASSGDTVRELALAG 238

Query: 239 SGIALLPDYIV---KDNPNLVRIME----DVITPSFTVYF 271
            GIA L D++    +    LV ++     DV  P   VY+
Sbjct: 239 EGIASLSDFMTGRDRQRGELVEVLAAQRVDVRQPINAVYY 278


>gi|90577797|ref|ZP_01233608.1| transcriptional regulator [Vibrio angustum S14]
 gi|90440883|gb|EAS66063.1| transcriptional regulator [Vibrio angustum S14]
          Length = 306

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LTE GS
Sbjct: 4   FSDMTLFISIVKNQGMAAAGRELGLSPATVTARLQALEDRYGVKLLNRSTRHISLTESGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+   E+   ++ T+  LQ  S +  G L+I+   D+G+  +   +  F   YPD+  
Sbjct: 64  LYHQACLEIIDSVKETENLLQTGSQEVRGTLKISAPRDIGKQYISPIISAFCERYPDVVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L LD+K  +++    D  IR  + +  S+LI RKL        A P YL N   P++ Q
Sbjct: 124 YLYLDDKLTNLAESGIDIVIRYGE-LADSNLISRKLAGSRRVLCATPEYLANKGTPVTPQ 182

Query: 185 ELDKHNLITF 194
           +L  H+ +  
Sbjct: 183 DLADHHCLAM 192


>gi|299533615|ref|ZP_07046989.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718337|gb|EFI59320.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 312

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 5/236 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-KL 66
           L  F  VA+  S T+AA  + ++ +++S+ I  LET + ++LF R  R L LTE G   L
Sbjct: 9   LAAFEQVAQHRSLTYAAHAIGVTPAALSQTIKKLETRLDVRLFDRTTRSLNLTEAGRIYL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R++  + +  E T+ +LQ  +    G LR+  +   GQ L++  L EF  L+P I ++L
Sbjct: 69  ERISPALTNLREATE-DLQLQAGVEGGTLRLTISHPAGQVLVEPMLAEFFALHPHIHVEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + D+  +DI  +  D  IR  + ++   +       + M   A+P YL+    P    EL
Sbjct: 128 VYDDGFVDIVREGFDVGIRNGESLEGDMVAVPLTQDLTMCFGASPAYLRTHGTPEHPDEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           ++H  I +   +      + W   +D  + E  +S  L VN   + M+  + G G+
Sbjct: 188 EQHLCINY--RMSSSGALYKWEFNIDGKLSERSVSGPLTVNHSDTAMRAALDGIGV 241


>gi|260575233|ref|ZP_05843233.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
 gi|259022493|gb|EEW25789.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
          Length = 296

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 124/264 (46%), Gaps = 11/264 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  VAR+ S + A + L L  +++ R+I+ LE  +  +LF +  +G  LTE 
Sbjct: 1   MDWDDLRLFLAVARAESLSGAGKALKLDPATLGRRIARLEQGLAARLFVKSPQGYALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L          +     EL+      +G++RI         LL   L       P +
Sbjct: 61  GQRLLVHAERAEAAMAGAAEELRGVPGSLTGQIRIGAPDGCANYLLPQVLAAICDGNPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q++   +  ++S   AD AI + +P ++  L  +KL   H+H  A+  YL+      S
Sbjct: 121 EVQIVALPRVFNLSKREADLAIAVSRP-EAGRLTVQKLTDYHLHLAASRGYLEAHGAIDS 179

Query: 183 IQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +L    +I +   IP  + D   ++LA     IG   +  L  NS    + +   G+G
Sbjct: 180 PADLRGRRMIGY---IPDMIFDKELDYLAE----IGVAHVP-LASNSVSVQLNWLRHGAG 231

Query: 241 IALLPDYIVKDNPNLVRIMEDVIT 264
           + ++ D+ +   P LVR++ D I+
Sbjct: 232 VGVVHDFALPAAPELVRLIPDQIS 255


>gi|240947910|ref|ZP_04752344.1| LysR protein [Actinobacillus minor NM305]
 gi|240297773|gb|EER48220.1| LysR protein [Actinobacillus minor NM305]
          Length = 296

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 97/192 (50%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + LR F +VA++ SFT  A QL +S++++S  I  LE+ +G+KLF R  R +  T
Sbjct: 1   MQENLNDLRTFLLVAQTNSFTKVAAQLGISRAAVSYTIGQLESRLGMKLFNRTTRSVATT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L +  + ++  ++    ++ +S  +  G LRI  T++   ++L    + F   YP
Sbjct: 61  DAGEQLFQQIAPLFDDIDNRLSQILDSQNQKRGTLRINGTVNAIASVLWNKFQAFSKHYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L ++ + +DI  +  D  IR    +    +  R          A+P YL     P
Sbjct: 121 EITLELAVEMRFVDIVAERFDAGIREGAHVDLGMIAVRVSDDFTQSYVASPDYLAKHGTP 180

Query: 181 LSIQELDKHNLI 192
            +  +L  HN I
Sbjct: 181 ETPDDLVNHNCI 192


>gi|254477165|ref|ZP_05090551.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214031408|gb|EEB72243.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 298

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 137/292 (46%), Gaps = 12/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA + SF   A ++ LS  S +R ++ LE  +G +LF R  R + LT+ G +  
Sbjct: 7   LEVFVAVAEAESFAAGARRMGLSAPSATRGVNALEARLGARLFTRTTRSVRLTDVGRRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++        ++  P G+LRI    + G+  +   L EFL  Y  +  +++
Sbjct: 67  EDARHILAQMQAADDAATGAASNPVGQLRITCPNEFGRIYVTPILTEFLDTYAGVSAEVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  +  D A+R+ + + SS L   ++  +H     +P YL     PL+  +L 
Sbjct: 127 MVDRIVNMVEEGFDLAVRIGE-LPSSGLTAVRVGQVHRVVCGSPAYLAAAGTPLTPADLL 185

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H +++   + P     F   L  V R    PR++   V + + + +      G+  +  
Sbjct: 186 QHKVVSASPISPVSEWRFGGELRDVVRL--RPRLAVTSVAAAIEVARR---DWGLCRVLS 240

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           Y V    +   LVR+++D    +  ++  + E  +   K++AF +F   KAR
Sbjct: 241 YQVGPDLEAGRLVRVLQDHEPAALPIHLVHAEGRRAPAKVRAFIDFA--KAR 290


>gi|327194309|gb|EGE61170.1| transcriptional regulator, LysR family [Rhizobium etli CNPAF512]
          Length = 294

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 114/258 (44%), Gaps = 29/258 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG---- 63
           + +F  V  +GSF  AAE   +S + +++ I  +ET +G KL +R  R   LTE G    
Sbjct: 7   MAMFVRVIDNGSFAAAAEIAQVSPAMVAKHIKTIETRLGAKLIHRTTRRHQLTEVGQLYY 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R  SEV    E +  ELQ +   P G+LR+   +  G  +L   L ++   YPD+ 
Sbjct: 67  ERCKRALSEVALA-EASASELQSA---PRGRLRVVAPVSFGTQVLVPALIDYQNAYPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L LDN   D+  +  +  I +  P+   SL+ R L        AAP YL     P+S 
Sbjct: 123 IELSLDNNVHDLIGEGFELGIHI-GPLSDDSLVARPLTPYRRILAAAPDYLARHGRPVSP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGE----PRISCLQVNSYLSIMQY 234
           + L  H           C+    W    DR     P GE    P       N   ++   
Sbjct: 182 EALTNH----------LCLGHSYWRRQ-DRWHLVGPGGEMRDVPISGKFSTNQGAALRMA 230

Query: 235 CVLGSGIALLPDYIVKDN 252
            + G+GIAL P+ ++  +
Sbjct: 231 ALSGAGIALQPELLLAAD 248


>gi|291616054|ref|YP_003518796.1| YafC [Pantoea ananatis LMG 20103]
 gi|291151084|gb|ADD75668.1| YafC [Pantoea ananatis LMG 20103]
          Length = 320

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A  GSF  AAEQL LS   +++ I+ LET +G  L  R  R  +LT+ G   +
Sbjct: 25  MNVFVKAAEVGSFAAAAEQLRLSPQMVAKHIASLETRLGTVLLNRTTRRQSLTDVGRNYY 84

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  + E       E    PSG L+++  +  G   L   +  +L  Y +IQ+ L 
Sbjct: 85  ERCKVVLAEAEEADAIAMEMKSTPSGILKVSAPLTFGAFTLAPFITRYLARYTEIQVDLE 144

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ++   +  +  IR+ + +  SSL+   L    + A A+P YL     P +  +L 
Sbjct: 145 LSDRLVEPFEEGYEVVIRIGE-LTDSSLVAYPLKPYRLIACASPTYLARMGMPATPADLM 203

Query: 188 KHNLITFGDLIPK--CMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H  + +G   P   C   F     V+  +P G       + N + +++   + G G+ L
Sbjct: 204 DHVCLVYGIWSPSMPCRWHFQRAGRVEEVKPQGR-----FRSNDWKALLHAALEGHGVTL 258

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P  ++    +   L++I+ +   P+  +    P   + T K+++F + I
Sbjct: 259 GPADVLNEEIEKGRLIQILPEYDGPARPMNMLIPTGRRQTVKIRSFVDAI 308


>gi|260550593|ref|ZP_05824802.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406304|gb|EEW99787.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 306

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 135/289 (46%), Gaps = 13/289 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +   GSF+ AA+QL++ +++ S  I  LE+ +  +L  R  R +  +  G 
Sbjct: 4   FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPDI++
Sbjct: 64  AFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P   +
Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKNGTPQQPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           +L  H  + F          F  +       G+ +     S + VN   + +   + G+G
Sbjct: 183 DLLSHYCVNFFSTTAGRNYPFELMVN-----GKKQDYFLKSWIAVNDAENYVLSALRGAG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  +P Y V +   +  LV ++     P  +V   YP+  + + +++ F
Sbjct: 238 LIQVPRYHVANELKDGQLVEVLSAWEIPKMSVSALYPQHRQLSPRVRVF 286


>gi|254691388|ref|ZP_05154642.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 6 str. 870]
 gi|256256573|ref|ZP_05462109.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 9 str. C68]
 gi|260757001|ref|ZP_05869349.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260882812|ref|ZP_05894426.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|297249930|ref|ZP_06933631.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196]
 gi|260677109|gb|EEX63930.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260872340|gb|EEX79409.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|297173799|gb|EFH33163.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196]
          Length = 306

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 128/287 (44%), Gaps = 11/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + AA  L LS + +S+++  LE  +G  L     R + LTE G   H
Sbjct: 8   MEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTSLLQCTTRQIALTEAGQGYH 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S    G L+I+     G+  +   L  F+    D+ + + 
Sbjct: 68  ERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQ 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P +I++L 
Sbjct: 128 LSDEMVDIVGDGYDLAIRVGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   +  P  +E       V RP G      LQ NS   + +  + G GIA    +
Sbjct: 187 DHICLAPHNNDPWRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTW 240

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV+++ D   + +  ++  YP       K++ F +++
Sbjct: 241 DVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|226943280|ref|YP_002798353.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226718207|gb|ACO77378.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 327

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 133/290 (45%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF   A +GS + AA QL +S +  ++ +  LE  +G+KLF R  R L LT+ GS+  
Sbjct: 32  MRVFVRAASAGSLSAAARQLEMSPAMATKHVDALERRLGLKLFQRSTRRLVLTDAGSQYL 91

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+  +  L    V+ SG LR+   +  G   +   L  F   +P ++I+L 
Sbjct: 92  DTCQRLLGELDEAEAALLSQRVEASGLLRMNVPLSFGNRFIAPLLPAFARRHPAVRIELG 151

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  D  D A+R+ + +  S L  R+L        AAP YL     P  + EL 
Sbjct: 152 LTDSQVDLIEDRWDLAVRIGR-LADSPLQARRLGDCPTLVCAAPDYLDRRGVPRRVVELG 210

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
           +HN + +   +        W    D   G  R++    L  N+  +++   + G G+   
Sbjct: 211 QHNCLGYS--LSSWGGSREWAFGRD---GSVRVAISGDLAANNGDALLAAALDGQGLIYQ 265

Query: 245 PDYIVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +IV D      LV + ++    P   ++  YP   +   K++A  +++
Sbjct: 266 PLFIVADALQRGELVSLELDHPPHPLGGIHALYPPERRPPAKVRAMLDYL 315


>gi|172062624|ref|YP_001810275.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995141|gb|ACB66059.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 306

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 131/277 (47%), Gaps = 18/277 (6%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 31  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 90

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 91  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 150

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R  +P   + ++ R+L        AAP YL     P +  EL +HN I     I +  E 
Sbjct: 151 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGTPGTPHELTRHNCIG----IRQGDEG 205

Query: 205 FN-WLATVDRPIGEPR-ISCLQVNSYLSI------MQYCVLGSGIALLPDYIVKD---NP 253
           +  W  T  R  G  R    +++N  L+       +++ + G GI +  ++ ++D   + 
Sbjct: 206 YGIWRLTGGR--GASRNTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADG 263

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LV ++ D  TP+  +Y  Y +  + + +++AF +++
Sbjct: 264 RLVVVLPDYETPAADIYAVYAQRHQMSARIRAFVDYV 300


>gi|319790836|ref|YP_004152476.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593299|gb|ADU34365.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 317

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 121/292 (41%), Gaps = 29/292 (9%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+  R F  V R GS + AA  L ++Q ++ R ++ LE  +G+ LF R   GL  TE
Sbjct: 4   NIGWELYRSFLGVLREGSLSGAARALGITQPTVGRHVAALEAALGVVLFTRSQVGLMPTE 63

Query: 62  QGSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
               L             LE       E   K  G +RI+ +  +G  +L   +      
Sbjct: 64  VALALQGHAEAMESTAASLERAATSQGEEGGKIRGVVRISASEVIGVEVLPPIVARLREA 123

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P ++++L+L N+  D+    AD A+R+ +P Q   L+ R++  I +  +A   YL    
Sbjct: 124 HPALKVELVLTNRVQDLLRREADIAVRMVRPKQ-EQLVARRVGQIELGFHARKDYLARRG 182

Query: 179 EPLSIQELDKHNLITF----------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
            P   ++L  H +I +          G  +P    D                  L+ +S 
Sbjct: 183 TPRKQEDLAAHAVIGYDQPSAFVRNAGKALPGYGRD---------------AFSLRTDSD 227

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
           L+ +     G+GI +    + + +  LVR+M    +     +    E L+N+
Sbjct: 228 LAQLALIRAGAGIGICQAGLARRDAALVRLMPRAFSMKLETWITMHEDLRNS 279


>gi|229590830|ref|YP_002872949.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
 gi|229362696|emb|CAY49606.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
          Length = 291

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 1/165 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VA       A+    +S++++SR+IS LE ++G++L  R ARGL LTE G  L   T
Sbjct: 9   FTLVATHSGLGKASRASGISKATLSRRISDLEEQLGVRLIERSARGLKLTEAGEALMSRT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                ++       +E    P G+LR+A  I   Q  +     EF   YP++ I+++ ++
Sbjct: 69  QGPLSEVTDAMTAAREGVSTPRGRLRVAAPILFSQLAMGRIGAEFCAAYPEVFIEVVSED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           + +D+  +  D AIR+  P   SSL+ R      +   AAP  LK
Sbjct: 129 RRVDLVEEQFDVAIRI-NPSPDSSLVGRCFAKDRLIVVAAPELLK 172


>gi|221199028|ref|ZP_03572073.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205287|ref|ZP_03578303.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175078|gb|EEE07509.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181479|gb|EEE13881.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 304

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 126/288 (43%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQI  LE ++G+ LF R  R + LT+ G +  
Sbjct: 22  LLVFEAAARHESYTRAADELSLSQSAISRQIQTLEDQLGVPLFRREGRSVKLTDVGRRYF 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 82  AEVGGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 140

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               +ID  +D  D AI +        L   +L    + A A+P    +     +     
Sbjct: 141 SRIGNIDFHVDDLDAAIAVGTG-DWPGLHAHRLYNEFLIAIASPDAPPDANGERAPAWAA 199

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           +  L+          E   W A       + RI    ++ S+L  +Q    G GI L+P 
Sbjct: 200 RQTLLGVTSNQHAWAE---WFAHYRLDHRQMRIGPSFELTSHL--IQAVRAGMGIGLVPK 254

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +V+D      LV I E  IT   + Y  YP   ++   L AFR+++ 
Sbjct: 255 VLVEDELSRNELVSIGE-AITSRRSYYLVYPPENESLPSLAAFRDWLM 301


>gi|149201727|ref|ZP_01878701.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
 gi|149144775|gb|EDM32804.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
          Length = 306

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 128/295 (43%), Gaps = 20/295 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A  GSF+ AA  L L+ +++SR ++ LE  +G++LF+R  RGL LTE G   
Sbjct: 6   NLEAFVRSAECGSFSGAARILALTPAAVSRSVAMLERNLGVRLFHRSTRGLRLTEAGESF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E   +L+     +      P+G L+++     G   +   L  FL  YP I+ + 
Sbjct: 66  LASVGEPLDRLQGAISAVTAQGPTPAGTLKLSMPPSFGLAHVLPLLPGFLAQYPLIRAEW 125

Query: 127 ILDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             +N+ +D+  +  D AI     R P      + R+L  +H+ A A+P Y+   R P   
Sbjct: 126 HFENRVVDLVTEGYDAAIGGAIERAP----GTVARRLAPLHVVAVASPAYMAGRRGP--- 178

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQ----VNSYLSIMQYCVLG 238
              D   L  F  +  + +        + R   G+   + L     VN   +I +   LG
Sbjct: 179 --TDPAGLAEFDGIAMRVLRTGRIRHLIMRNRAGQEMEAALNETVVVNEPSAIREAAKLG 236

Query: 239 SGIALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIALL    ++ D  +  L+R++ D       +   Y        K +AF ++I
Sbjct: 237 LGIALLAVAEVLSDLEDGRLIRLLPDWYADDGGISVYYASRSFLPAKTRAFIDWI 291


>gi|116254314|ref|YP_770152.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258962|emb|CAK10071.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 300

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 129/292 (44%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR+GS T AA +L L+QS++SRQ+S LE ++G++LF R  + + LT  G    
Sbjct: 14  LAAFEAVARTGSVTAAARELDLTQSAVSRQVSALEEQLGVELFLRERQTMRLTLAGDGYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E   ++ +  + L+ +     G L +A     G   L   L  FL     + I L+
Sbjct: 74  REIREALRRISSASLNLRAN--PHGGTLNLAILPTFGTRWLAPRLGRFLAANAGVTINLV 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCREPLSIQE 185
                 D  +D  D AI    P    + ++  L++       +P +LK      P  +  
Sbjct: 132 TRLSPFDFRLDSIDAAIHFGHPHWPGAELE-FLMSERTVPACSPDFLKQYTISGPEDLLA 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +   +L T     P   E   W A+    +    +  +  + + +  Q  + G G+ALLP
Sbjct: 191 VPLLHLTT----RPDAWE--QWFASNG--VSFESVHGMLFDQFATAAQAAIAGLGVALLP 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +++++     +LV  ++  +      Y  +P    +   L AFR++I  +A
Sbjct: 243 TFLMQEEIRRGDLVAAVDREMESRERYYLAFPPERADYAPLAAFRDWIVAEA 294


>gi|260549721|ref|ZP_05823938.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407238|gb|EEX00714.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 309

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 126/272 (46%), Gaps = 9/272 (3%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE 
Sbjct: 3   DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMDVILLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+    E  +I + E      G LRIATT DL    +   L  ++  +  +
Sbjct: 63  GQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHIIPALSHWMSAHRGL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +   + ++ ID+  +  D A+R+   P++ SS +   +  +     A+P YL      L
Sbjct: 123 SVHFEVGHRYIDLIEERIDIAVRMSSTPVEESSSVV-PMAFVDQILVASPSYLNQSSPIL 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L+ H L++   +      +F    T ++ +    +S LQ N+       C  G GI
Sbjct: 182 HPNDLNNHELLSINAMNESRTFNFQHAKTGEK-LNIEMVSRLQSNNLQVAKALCQQGHGI 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVY 270
           A +     +      +L+ I+ D   P+FT+Y
Sbjct: 241 ARILYLDAQKELKAGSLIEILPDWKLPAFTLY 272


>gi|152971681|ref|YP_001336790.1| DNA-binding transcriptional activator GcvA [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206577305|ref|YP_002236827.1| glycine cleavage system transcriptional activator [Klebsiella
           pneumoniae 342]
 gi|238896280|ref|YP_002921016.1| DNA-binding transcriptional activator GcvA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|288933777|ref|YP_003437836.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290511143|ref|ZP_06550512.1| LysR family transcriptional regulator, glycine cleavage system
           transcriptional activator [Klebsiella sp. 1_1_55]
 gi|330003171|ref|ZP_08304550.1| glycine cleavage system transcriptional activator [Klebsiella sp.
           MS 92-3]
 gi|150956530|gb|ABR78560.1| positive regulator of gcv operon [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206566363|gb|ACI08139.1| glycine cleavage system transcriptional activator [Klebsiella
           pneumoniae 342]
 gi|238548598|dbj|BAH64949.1| positive regulator of gcv operon [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|288888506|gb|ADC56824.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289776136|gb|EFD84135.1| LysR family transcriptional regulator, glycine cleavage system
           transcriptional activator [Klebsiella sp. 1_1_55]
 gi|328537054|gb|EGF63338.1| glycine cleavage system transcriptional activator [Klebsiella sp.
           MS 92-3]
          Length = 305

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   E++ +L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YFQDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIQWLVPRLTSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGDKALKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
             +L +H L     L      D+    T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PADLAQHTL-----LHDASRRDWQ---TYTRQLGLSHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|219670907|ref|YP_002461342.1| LysR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219541167|gb|ACL22906.1| transcriptional regulator, LysR family [Desulfitobacterium
           hafniense DCB-2]
          Length = 295

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 144/297 (48%), Gaps = 19/297 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  R+F  V+R+ SF+ AA++L+++QS++S+ I+ LE+E+ ++LFYR +RG+ LT +G+ 
Sbjct: 6   DLYRIFNAVSRNKSFSKAAQELYMTQSAVSQAIAKLESELEVQLFYRTSRGVLLTNEGNL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   +     +   + ++ E     +G+LRI     + +  L   L+EF   Y  I++ 
Sbjct: 66  LNEHVNSALGMIHAAEDKILEFKELKAGQLRIGVGDTITRYFLLPYLEEFHSAYHSIKLN 125

Query: 126 LILDNKDIDISMDY-----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IL+    +I  D+     AD  I    PIQ  SL       IH        Y     +P
Sbjct: 126 -ILNGTTTEIQ-DFIKSGKADVGI-CNLPIQDESLYVIPCREIHDIFVGGEKYKDMTVKP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  ++L +  LI     + +     N++ +  +  G P     ++ SY  ++++  +  G
Sbjct: 183 IPFKQLMELPLI----FLEEKSNSRNYVESFLKKEGFPLSPVFELGSYDLMLEFAKINLG 238

Query: 241 IALL-----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA +      DY+   +   +++ ED+  P  ++  CY +++  T   K F   I L
Sbjct: 239 IACVIKEFSEDYLANGSLYELKLEEDI--PKRSIGLCYLKSVPLTPAAKKFVESIIL 293


>gi|83644055|ref|YP_432490.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632098|gb|ABC28065.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 307

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 16/245 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V R+G    A  ++ LS +S++ +++ LE     +L  R  R + LTE G++
Sbjct: 5   DDIELFVRVVRAGGLAAAGREVGLSPASMTARMNALEARYQTRLLQRSTRSIALTEAGAR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  ++   +  L E   +  G LR+  T D G++ +   L +F+ L+P ++  
Sbjct: 65  FYEAGQRVVAEMAQAEAALLEKEGELRGSLRVTATSDFGRHYVAPALAQFVSLHPQVRPA 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQ 184
           L L +  +++  +  D AIR    +  S+LI R LV  +     A+P Y+ +  +P + +
Sbjct: 125 LHLHDGVVNLIEEGFDLAIRYGN-LPDSNLIVRPLVADNRRVLCASPAYVASFGQPQTPE 183

Query: 185 ELDKHN---LITFGDLIP--KCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +L  H    +  FG+++   +   D  W   TV+        + L  N    I Q+ + G
Sbjct: 184 DLQAHRCLVMTRFGEMLAEWRFQSDSGWRTLTVE--------AFLASNDGALIRQWALAG 235

Query: 239 SGIAL 243
            GIAL
Sbjct: 236 MGIAL 240


>gi|167589473|ref|ZP_02381861.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 311

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS- 64
           + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF R+ R + LTE G  
Sbjct: 12  NSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGQALFERYNRRVELTEAGRV 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L  V +        T  +LQ       G LR++         L   L  F + +P I++
Sbjct: 72  YLAEVGASFDRIALATAQQLQRGR---HGVLRVSAPATFSLRWLVPRLSSFQVAHPHIEV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL--KNCREPLS 182
           +L   N+ ID   D  D  IR   P      +  + ++       AP  L  +  R+P  
Sbjct: 129 RLSTSNEPIDKLRDVVDVIIR-GGPQTIEGYVAEEFLSEVRLPVCAPRLLDGRPLRQPAD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +      +  T+  + P+      WLA    P   PR S    + YL+ +Q  + G G+A
Sbjct: 188 LAHFTLLHSATYPGMWPE------WLAAAGHPHLAPRHSLTLEHFYLT-LQGALDGLGVA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + P  +V D+     LV+  +  + P +  +     A    G ++AF +++ L  
Sbjct: 241 MGPIALVADDIAEGRLVQPFDAPVLPPWRYFIYVAAARAEDGAVRAFMDWLKLAG 295


>gi|260778117|ref|ZP_05887010.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606130|gb|EEX32415.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 311

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 130/259 (50%), Gaps = 9/259 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSF+  A++L +S SS+SR I+ LE+ +  +L  R  R + L+  G ++
Sbjct: 12  EMAIFVSVVESGSFSKTAQKLGVSPSSVSRSITRLESALQERLLERTTRKMRLSTTGQEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           + + +++ +  +      Q      SG LR+A    L + +L   + +F+  YP+I +QL
Sbjct: 72  YSLCNDMMNSAKMAISAAQADKTNVSGALRVAAPKALSRQVLMPMILDFIDYYPNISLQL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID   D  D  I +     +  LI ++L    +   A+P Y++    P   +++
Sbjct: 132 KAADHYIDPIGDEVDILIHITDN-PTEGLIAKQLSQCRLIMCASPSYIEKHGMPTHPKDI 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
            +HN +  G+     + DF      ++ +    I    VN +  I +  VL G GI++ P
Sbjct: 191 SEHNCLCLGENPKDRIWDF---TNNNKKLSINVIGSFAVN-HSEIRREAVLRGVGISVFP 246

Query: 246 DYIVK---DNPNLVRIMED 261
           +++++   D+ ++V +++D
Sbjct: 247 EFVIQPYIDSGDVVEVLKD 265


>gi|171319320|ref|ZP_02908432.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095465|gb|EDT40433.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 313

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP + ++L 
Sbjct: 67  DRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +H    A+P YL     P ++++L
Sbjct: 127 LSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGDVHSVLCASPAYLNERGTPRTVRDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H+ +    + P    D  W   +D P G    E  +   QVN   ++      G GI 
Sbjct: 187 EAHSCLQI--VTPIFPRD-RW--HLDGPDGRETFELPLPDFQVNIADALGAALRAGLGIG 241

Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ +      TVY  Y        K++ F +F+
Sbjct: 242 SLPMSSAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292


>gi|21243565|ref|NP_643147.1| LysR family transcriptional regulator [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109133|gb|AAM37683.1| transcriptional regulator lysR family [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 304

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 129/285 (45%), Gaps = 7/285 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GS T  A  L LS +  S+++  LE E+G++L +R  R L  T +G +L   
Sbjct: 9   LFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTAEGQRLAER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L+    +L+ES+    G LR+  +   G+  +   L EF   +P ++I   L 
Sbjct: 69  GRVLVEDLDALAEDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPRLRISAHLS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+     D AIR+  P++ S L+ R++        A+P YL+    P +  EL +H
Sbjct: 129 DDLVDLVKQGFDLAIRI-GPLEDSGLVARRIADNRRTLAASPAYLQRHGTPRTPDELAQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             +    +     +D   L T D  +   R+ S  + N    +    V G GIA+   + 
Sbjct: 188 AGVLL--MGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAVHSYWH 245

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + D   +  LV +M D   P+  +    P       +++AF +F+
Sbjct: 246 IADELRSGRLVHVMPDYPPPASQISAVMPARQLQPPRVRAFVDFL 290


>gi|83593049|ref|YP_426801.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83575963|gb|ABC22514.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 306

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 1/192 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++LR F  VA  G+ +  A +L L QS+I+R +  LE  VG+ L  R  R + LT++GS+
Sbjct: 9   ERLRSFVRVAERGNLSAVARELGLGQSTITRHLRELEEAVGVALLSRTTRRVVLTDEGSR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  + ++   ++    E + +   P+G +R++ T  LG   + G +  F   YPDI++ 
Sbjct: 69  YYADSLQILRLVDQAGEEARAARGAPAGTIRLSCTAALGVLHISGLIFAFQDRYPDIRVD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ID+  +  D A+RL  P+  S L  R L        AAP YL     P +  +
Sbjct: 129 LGLTDERIDLVREGVDIALRL-GPLTDSGLKLRPLGLSRRVLVAAPAYLAARGRPAAPGD 187

Query: 186 LDKHNLITFGDL 197
           L  H+ IT  ++
Sbjct: 188 LAGHDAITMANV 199


>gi|330900649|gb|EGH32068.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 304

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 138/291 (47%), Gaps = 13/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR  SF  AA++L +S + +S++I  LE  +G+ L +R  R +++TE G +
Sbjct: 8   DDLNVFVHVARRSSFVGAADELGMSAAYVSKRIRLLEQGMGVVLLHRSTRQVSITEDGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++   G+  +   L E    YP + I+
Sbjct: 68  VYEWARGMLDSVQQMGEEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAARYPKLDIR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YL     PL++ E
Sbjct: 128 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPGYLNLHGTPLNLGE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H+ +    +I +    F  +  ++ P G   +     L  N      Q+C+ G G+ 
Sbjct: 187 LANHDCL----VIKERDRPFG-IWHLNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVL 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   + V+ +     LV+++ D    +  ++  +   L ++ K++    F+
Sbjct: 242 LRSLWDVRTDLAEGRLVQVLPDYRQDA-DIWAVHTSPLMSSAKVRVTVEFL 291


>gi|294635102|ref|ZP_06713613.1| glycine cleavage system transcriptional activator [Edwardsiella
           tarda ATCC 23685]
 gi|291091479|gb|EFE24040.1| glycine cleavage system transcriptional activator [Edwardsiella
           tarda ATCC 23685]
          Length = 315

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 129/295 (43%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSALNEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++     D  D AI   +       ++R L   ++    +P  L          +
Sbjct: 127 IQAVDREEGKLADDVDVAIFYGRGHWPGLRVER-LYAEYLMPVCSPQLLLGEHPLKDPTD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
           L  H L+             +WLA   R +G   I+  Q    +    ++Q  V G GIA
Sbjct: 186 LAYHTLL-------HDTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHGQGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+ + + +   +   LV    DV+      Y    +A  + GK+ AFR +I  +A
Sbjct: 238 LVNNVMAQTEIEAGRLVCPFNDVLISKNAFYLVCQDAQADLGKIAAFRQWILARA 292


>gi|254502436|ref|ZP_05114587.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438507|gb|EEE45186.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 284

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 129/284 (45%), Gaps = 9/284 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W++ R    VAR G+ + A+  L + + +++R I  LE  +G KLF RHARG T TE G
Sbjct: 3   NWNEFRTAAHVARLGTVSAASAALGVHRITVTRHIDALEGLLGAKLFQRHARGFTPTELG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R+    Y +    +   + +S +  G + I T +D+    +   + +    +P + 
Sbjct: 63  YELLRIADATYAQFGELKRLARGASDELEGTV-IITALDVLVPFILPMIADVRARHPSLN 121

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L+  ++ + +    A  A R+  KP    +++   L  + M  YAAP YL+    PL 
Sbjct: 122 VNLVSSDRVLKLEYGEATLAFRIGPKPDHPDNVVIPAL-KLEMGLYAAPQYLQKRGHPLK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             E   H  +   D  P+    F+WL   + P     I C   N+  +  +    G G+ 
Sbjct: 181 SGEFANHIYVGPDDSCPR-PPYFDWL-DANVPSDRVHIRC---NNVATSFEAVKAGIGVG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            LP    + N   V+I E   + + TV+      L  + K++A 
Sbjct: 236 FLPRATAEAN-GCVQICEREHSWNETVWAVTHMDLHRSSKVQAI 278


>gi|328886881|emb|CCA60120.1| putative lysR-family transcriptional regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 321

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 17/203 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  + +L  F  VA +  FT AAE++H+SQ S+S+QI  LE E+G +LF R    +TLT+
Sbjct: 11  AMQFQQLLYFVAVAETRHFTRAAERVHVSQPSLSQQIKALEQELGAELFSRARGNITLTD 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L  +   +    ET +IE+QE +    G++R+  T  L   LL   L+ F  L+P 
Sbjct: 71  AGEALLPLARRILADTETARIEVQELAQLKRGRVRLGATPSLCTGLLPDVLRAFHDLHPG 130

Query: 122 IQIQLILDNKDIDI-------SMDYADCAIRLRKP---IQSSSLIQRKLVTIHMHAYAAP 171
           I++ LI +    D+       ++D A   + L  P   + +  L++  LV +   +  AP
Sbjct: 131 IEL-LIEEGGSHDLVRELARGALDLALVVLPLPTPSPALTTVELLREDLVVVSSASAPAP 189

Query: 172 HYLKNCREPLSIQELDKHNLITF 194
                 R P+ I +L    L+ F
Sbjct: 190 ------RRPVRITDLRDQPLVMF 206


>gi|330821500|ref|YP_004350362.1| transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327373495|gb|AEA64850.1| transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 323

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 120/270 (44%), Gaps = 4/270 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   G+ + AA  L L Q ++S +I  LE  +G++L  R  R ++ T++GS  +
Sbjct: 7   MRVFVRVVERGNLSRAARDLGLGQPAVSDRIERLEQHLGVRLLLRSTRAVSCTDEGSLFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + +  V    E  ++ +        G++RIA    +G  LL G +      +P + ++++
Sbjct: 67  QKSKLVLDAAEEARVAVAPGDRAVRGRIRIAAPHGVGDALLPGVVAVMREQHPQLHVEMV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++  D   +  D ++RL + I   + I R+L  +     A+P YL     P +  +L 
Sbjct: 127 LNDEPTDPVTEGVDLSLRLGR-IGEGNFIARRLGHVRRVLVASPGYLDAAGRPEAPADLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I    L       F   + +      P      V+ +  + Q  + G GI +L + 
Sbjct: 186 RHPFIRVAGLFSDGQLRFAAASPLPASPAAPINIVTTVSHWGPVHQLLLAGCGIGVLQEI 245

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           +  +      LV ++     P F ++   P
Sbjct: 246 VCAEALATGRLVELLPGHTVPGFELHALLP 275


>gi|311107615|ref|YP_003980468.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310762304|gb|ADP17753.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           146 [Achromobacter xylosoxidans A8]
          Length = 309

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 128/271 (47%), Gaps = 12/271 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + +++F  +  +G+ + AA +  +++S +SR +  LE   G +L  R  R L LT+
Sbjct: 6   ALDLNLIQLFVTIVDAGTLSEAAVRHGVTRSHVSRNLQKLERAFGAQLIRRSTRRLELTQ 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGNLKEFLLLYP 120
           QGS L+   + +  ++E+ +  LQ+   +P+G +R++    LG+ + L+  L  F L +P
Sbjct: 66  QGSVLYEHGARMAREVESARHALQKLGSEPAGHVRLSIPTGLGELDQLRPLLVSFALRHP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + ++++  N+  D+     D A+R +  P Q    + R L  +     AAP YL+    
Sbjct: 126 SLTLRVLFSNRVSDLISSEIDVALRVMTTPPQ--DYVARALGDVKWVLCAAPSYLEQFGA 183

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++L + + +   D  P           +      PR   LQ   +  + Q    G+
Sbjct: 184 PAHPRDLARLHFLGPPDPRPLVTLRLRRKDQLHEAKLAPR---LQSEYFPFLAQAARAGA 240

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVY 270
           G+ALLP Y+V  +     I    +TP    Y
Sbjct: 241 GVALLPAYVVYAD-----IAAGRLTPVLPAY 266


>gi|300715217|ref|YP_003740020.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299061053|emb|CAX58160.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 316

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 119/244 (48%), Gaps = 15/244 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR+G F  AA++L LS S+IS++I+ LE ++ I+LF+R+ R + LT +G  
Sbjct: 21  DDLSVFVTVARNGGFARAAQELGLSPSTISKRIAMLEKQLDIRLFFRNNRSMRLTAEGEI 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++   +     +L       +G + ++ +   G   +   L + + L+  + ++
Sbjct: 81  ALEGAMQIVSGVGDFVSDLNGLRGAVTGNITLSCSFGFGHEYMADALSDLMNLHNGLNVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++++++  +  D  I +   I +   I R+L        A+P YL+    P S+ +
Sbjct: 141 LMLSDREVNLVDEGIDIEIHVGDEI-NDLYIARQLAANRRILCASPDYLRQAGVPTSLDD 199

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGS 239
           L +H+ +   +   +     NW  T     GE  I C +VNS  S      ++ + + G 
Sbjct: 200 LRQHDCLIIQE---RSAAFGNWALTN----GEDSIVC-RVNSQHSSNSGSVVLAWALRGQ 251

Query: 240 GIAL 243
           GI L
Sbjct: 252 GIVL 255


>gi|239814001|ref|YP_002942911.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800578|gb|ACS17645.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 327

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 125/266 (46%), Gaps = 26/266 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR  +F  AAE++ L+QS++SRQI  LE EVG+ LF RH R + LT  G++L 
Sbjct: 18  LRAFEAVARHLNFRAAAEEMALTQSAVSRQIQSLEEEVGVALFLRHTRAVELTSAGAQLL 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +++T   ++++S+ + S  + + T        L   L+ F    P+I I+  
Sbjct: 78  LAVQQSLPRIDTAVRQIRQSAGRKS--VSLTTFASFASMWLIPRLEAFQRDNPEIDIR-- 133

Query: 128 LDNKDIDISMDYADCAIRLR------KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +D  D+ + ++ AD  I LR       P  +  L    L  +     A+P  LK+     
Sbjct: 134 IDASDVAVDLEVADVDIALRYGTREVMPPNAVRLFGETLTPV-----ASPWLLKSSPPIK 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +  ++    LI  GD     +E   W     +  ++R   +PR   L  N    ++Q  +
Sbjct: 189 TPADITGFTLIEAGDAHRTHLEWLTWRRWFEVNGLER--AQPR-RWLYFNYAYQMVQAAL 245

Query: 237 LGSGIALLPDYIVKD---NPNLVRIM 259
            G G+ L    ++ +   N +LV ++
Sbjct: 246 TGQGVTLARSSLIAESLANGDLVEVL 271


>gi|161613847|ref|YP_001587812.1| hypothetical protein SPAB_01582 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363211|gb|ABX66979.1| hypothetical protein SPAB_01582 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 301

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVSRPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGKDYAIRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|254251468|ref|ZP_04944786.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124894077|gb|EAY67957.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 310

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 113/256 (44%), Gaps = 11/256 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE +   +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKTATRLFERSTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     +GK+R+++T D G+N L   L EF  L+P +   L 
Sbjct: 67  NCCRQALQALDDADAMLQEGRNVVAGKVRLSSTSDFGRNQLLDWLDEFTALHPGVTFSLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R+L        AAP +++    P      D
Sbjct: 127 ASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFIERYGAP-----AD 180

Query: 188 KHNLITFG-DLIPKCMEDFN-WLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIA 242
            H+L  F  ++I       N W  T    +     P     + N      ++ + G GIA
Sbjct: 181 PHDLARFPCNVITIASGPMNTWRFTRGDDVQTYTVPMSGAFETNDGGLTREWTLRGHGIA 240

Query: 243 LLPDYIVKDNPNLVRI 258
           L   + + D+    R+
Sbjct: 241 LKSLWDIADDVRAGRL 256


>gi|325924019|ref|ZP_08185602.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325545513|gb|EGD16784.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 332

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 99/189 (52%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VA  GSFT A E L L ++S+S  +  LE  +G +L +R  R + LT  G+ 
Sbjct: 36  ESLRAFLRVAELGSFTRAGETLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLTGDGTA 95

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ + ++   ++  Q   Q    +  G+LR+  +  + +N +   L  FL L+P ++++
Sbjct: 96  FYQRSRDLLDDMDELQGMFQRDRGQLRGRLRVDMSSGIARNFVIPALPVFLALHPQLEVE 155

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC +R+   ++ ++L+ R L    +   A+  YL     P  + +
Sbjct: 156 ISGTDRRVDVVREGFDCVLRV-GTLEDTNLVARPLGAFRIINCASADYLTRRGIPRCLDD 214

Query: 186 LDKHNLITF 194
           L +H+L+ +
Sbjct: 215 LAQHDLVHY 223


>gi|295681353|ref|YP_003609927.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295441248|gb|ADG20416.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 323

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 132/291 (45%), Gaps = 12/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A+  SF+ AA +L L+ +++SR ++ LE  +G++L  R  R +TLTE G +  
Sbjct: 7   LESFVKSAQLQSFSEAARRLGLTPAAVSRNVAMLERNLGVRLLQRSTRRITLTEAGERFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L++   E    + +P+G L+++ +  LG   +   L EFL  YP ++ +  
Sbjct: 67  DSIGASLDSLQSAIEETSSGAAEPAGVLKVSLSPTLGPAYILPLLPEFLRRYPRVRPEWH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            + + +D+  +  D AI     + +  ++ R L   H+ A A+P YL++   P    EL 
Sbjct: 127 FEIRQVDLVREGYDLAIGGGFEL-TPGVVSRALAPAHIVAVASPGYLRDVALPSHPDELR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243
               +    +    +  +  L     P GE   + +     +N   S+ +   LG G+A+
Sbjct: 186 NLRGVVMRGMATGRIRKWTMLG----PNGEEAAAAINEDIVMNDPASMREAARLGLGVAM 241

Query: 244 --LPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             LPD +    +  LVR++ +  + + T+   Y        K + F  F+ 
Sbjct: 242 LALPDVLPDLADRKLVRLLPNWHSDAGTISLYYASRRLLPAKTRVFIEFVI 292


>gi|168462864|ref|ZP_02696795.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168819484|ref|ZP_02831484.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|195634382|gb|EDX52734.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|205343906|gb|EDZ30670.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320085828|emb|CBY95604.1| probable RuBisCO transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 301

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVSRPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|167565864|ref|ZP_02358780.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167574413|ref|ZP_02367287.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 300

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 18/240 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR GSF+ AA++LHL+Q+++SRQI  LE  +G+ LF R  R + LTE G +     
Sbjct: 17  FEAAARLGSFSRAADELHLTQAAVSRQIRALEENLGVSLFQRRNRAVFLTEAGREFSFTL 76

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ--NLLQGNLKEFLLLYPDIQIQLIL 128
           S     +      L+ +    +G+  +     L +  + L   L  F   YPDI+++L  
Sbjct: 77  SHALRSVAVGADRLRGA----AGENEVVLLCQLCEAFHWLMPRLSNFHQRYPDIELKLAT 132

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSL---IQRKLVTIHMHAY--AAPHYLKNCREPLSI 183
             + +     Y D A      IQSS+    +   L+T     +   +P YLK     + +
Sbjct: 133 TTRPLTEFDGYFDIA------IQSSNRDHGLHPLLLTASDDVFPVCSPRYLKGRAAHIEL 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L++H L+      P  +E   WLA +   +  P+   L  +SY  ++Q  V G G+A+
Sbjct: 187 DRLERHTLLHHHATPPYQLEWDTWLAALGHGL-PPKARSLSFDSYSLMLQAAVEGHGLAM 245


>gi|62180241|ref|YP_216658.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127874|gb|AAX65577.1| putative transcriptional regulator, LysR family [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322714715|gb|EFZ06286.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 301

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLRIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|33598653|ref|NP_886296.1| LysR family regulatory protein [Bordetella parapertussis 12822]
 gi|33574782|emb|CAE39442.1| LysR family regulatory protein [Bordetella parapertussis]
          Length = 309

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 15/242 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V R  S T AA+ LHL+QS++SRQI  LE  +G+ L  R  R ++ T +G++
Sbjct: 12  DLVRGFVAVGRRMSITLAAQDLHLTQSAVSRQIRALEAHLGVALLSRGFRSVSFTAEGAQ 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R+       +E  ++  Q  + +    + + +TI +    L   L  F   +P I ++
Sbjct: 72  LFRMADRWL--IELGELAAQWRAPERRTPVTVTSTIGVASLWLLPRLGRFQEAHPSIDVR 129

Query: 126 LILDNKDIDISMDYADCAIRL----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  DN+ +D+  +  D AIR       P  ++ +    +V +   A             L
Sbjct: 130 VAADNRVLDLDREQVDIAIRYCPRDAAPEGAAWMFGETVVPVAHPALGVAR--------L 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+ F D     ++  +WL T       P+   L  N Y  I+Q  + G G+
Sbjct: 182 DAAALAGQVLLEFDDPTRPWLQWADWLGTQGLGRARPK-GMLHFNQYDQIVQAALAGHGV 240

Query: 242 AL 243
           AL
Sbjct: 241 AL 242


>gi|241663443|ref|YP_002981803.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240865470|gb|ACS63131.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 331

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+   +A +G+ + AA QL    ++ S  +  +ETE+G +LF R  R +  TE G +
Sbjct: 5   DDLRLLVRIADAGNLSAAARQLGWLPATASAALKRVETELGARLFERTTRSMRPTEAGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    L+     L +   + SG +RIA T DLG+++L+  L  F   +P ++I 
Sbjct: 65  YLGYARQALEALDEGAESLGQDRTELSGPIRIAATSDLGRHILRPWLDAFCDEHPGVRIT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++  D+  +  D A+R    +Q S+L++R L +       AP Y +    P    +
Sbjct: 125 LVLGDRLADLMREDLDFALRYGN-LQDSALVRRPLASHPRVIVGAPSYFRQHGRPAHPSD 183

Query: 186 LDKHNLI 192
           L  H  +
Sbjct: 184 LADHRCL 190


>gi|148546441|ref|YP_001266543.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148510499|gb|ABQ77359.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 298

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 129/299 (43%), Gaps = 15/299 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V    SF  AA +L +S ++++R +S LE ++G+KL  R  R + LTE G +  
Sbjct: 7   MKVFVAVGELESFAAAARRLDISAAAVTRAVSALEEQLGVKLLLRTTRSVRLTEAGGRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +   +          +  P G L +   I  G+  +   +  +L  YP++ +   
Sbjct: 67  EDTRHILASIHEANEAAAGINATPRGDLAVTAPILFGKKFVMPCIVRYLQQYPEVDVSAF 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D A+R+  P+  S L   ++  +     A+P YL     P    +L 
Sbjct: 127 FLDRVVNMVEEGMDVAVRI-GPLPDSGLKALRVGRVRRMLCASPDYLARHGVPKHPSDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H +I   +L P+      W     D P     +PR   L V S    +     G GIA 
Sbjct: 186 GHAIIGTTNLSPRA----GWRFGVTDEPTLVRMKPR---LTVTSNDGAIAAASGGLGIAR 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           L  Y V D   +  L  ++ +     + ++  + E+   + K++AF + +    RD + 
Sbjct: 239 LLSYQVADELASGQLQVLLAEYEEAPWPIHVLHRESKYGSAKVRAFIDMLAQDLRDQQL 297


>gi|313497525|gb|ADR58891.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 298

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 129/299 (43%), Gaps = 15/299 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V    SF  AA +L +S ++++R +S LE ++G+KL  R  R + LTE G +  
Sbjct: 7   MKVFVAVGELESFAAAARRLDISAAAVTRAVSALEEQLGVKLLLRTTRSVRLTEAGGRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +   +          +  P G L +   I  G+  +   +  +L  YP++ +   
Sbjct: 67  EDTRHILASIHEANEAAAGINATPRGDLAVTAPILFGKKFVMPCIVRYLQQYPEVDVSAF 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D A+R+  P+  S L   ++  +     A+P YL     P    +L 
Sbjct: 127 FLDRVVNMVEEGMDVAVRI-GPLPDSGLKALRVGRVRRMLCASPDYLARHGVPKHPSDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H +I   +L P+      W     D P     +PR   L V S    +     G GIA 
Sbjct: 186 GHAIIGTTNLSPRA----GWRFGVTDEPTLVRMKPR---LTVTSNDGAIAAASGGLGIAR 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           L  Y V D   +  L  ++ +     + ++  + E+   + K++AF + +    RD + 
Sbjct: 239 LLSYQVADELASGQLQVLLAEYEEAPWPIHVLHRESKYGSAKVRAFIDMLAQGLRDQQL 297


>gi|218675884|ref|YP_002394703.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
 gi|218324152|emb|CAV25355.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 293

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 138/292 (47%), Gaps = 17/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  +G F+ AAE L +  + +SR +S +E+++G+ +F R  R + LTE+G +
Sbjct: 6   DDLEMVLTVVDAGGFSAAAETLDVQVAKVSRSVSKVESQLGVSIFNRTTRRVELTEEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      +++ + E+      P G+LR+        + L   ++ F   YPDI+++
Sbjct: 66  FVDSVRVGLQMIQSAEEEIVSRGELPKGRLRVDAASPFVFHQLVPLVQSFKEAYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    +H  A+P YL     P   ++
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LSDSTLHARPLGKSLLHIVASPDYLAKRGLPTKPED 184

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H ++ F G+ +       N     ++    P ++    ++  ++ Q  + G+GIA L
Sbjct: 185 LSSHQIVGFAGNKV------LNHWPLPNQSDVAPTVTA---SNGETVRQLVLAGNGIACL 235

Query: 245 PDYIVKDN---PNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++V+++     L+ I+E      T    V   Y ++   + ++ AF +FI
Sbjct: 236 SGFMVQEDMAAGRLIPILEQDKLANTDRERVNAVYYKSSSVSKRISAFIDFI 287


>gi|220916149|ref|YP_002491453.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954003|gb|ACL64387.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 294

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 130/291 (44%), Gaps = 35/291 (12%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  L  F  ++RSGS   AA++L + ++++ R+++ LE E+G+ LF R  +G   T  
Sbjct: 21  LDWGNLLFFLELSRSGSLARAAKRLGVDRNTVGRRVAALEEELGLPLFERGPQGWACTAA 80

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L  + S V   +                 L IA   D       G +      +P +
Sbjct: 81  GEELAALASRVEEDV-----------------LAIARHADARDRTPAGTVPSLRARHPRL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +  D ++ D++   AD A+RL +P   + L+ RKL ++    YA+P +    R    
Sbjct: 124 LLDVSADFRNYDLTRREADLALRLGRP-SDAGLVARKLASVAYGIYASPAFAAERR---G 179

Query: 183 IQELDKHNLITF-GDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +L +  ++ + G   P  + M+D          +   R    + N+ L++      G 
Sbjct: 180 RMDLARDPVLAYEGATSPQERWMDD----------LAPARAVAFRCNTSLALAAAARTGI 229

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G A+LP ++   +P LVR ++    PS+ ++      L+   +++A   ++
Sbjct: 230 GAAVLPCFVADGDPALVR-LDGPEPPSYDLWLLVHGDLRRVPRVRAVIEWV 279


>gi|119472822|ref|ZP_01614746.1| putative transcriptional regulator with periplasmic binding protein
           domain (LysR family) [Alteromonadales bacterium TW-7]
 gi|119444717|gb|EAW26023.1| putative transcriptional regulator with periplasmic binding protein
           domain (LysR family) [Alteromonadales bacterium TW-7]
          Length = 295

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 22/293 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  +     AA +  LS +++S ++S LE E+   L +R +R + L+  G   +
Sbjct: 7   LETFIAVVENKGVLAAAREQRLSPATVSHRLSKLERELATVLVFRDSRRVRLSPAGEVFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L   +  +   S   SG LR+     +    +   L EF   +PD+++  +
Sbjct: 67  TRIGAIIEALRDAEHSIGARSSSVSGLLRVTMPPWVFSKYVMPRLNEFEHAFPDLKLDFL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  D  D AIR+ + +  S L+ RK+V       AAP Y+K    P +I EL+
Sbjct: 127 ITDQFVNVVDDAQDVAIRVGQ-LNDSGLLSRKIVNNSRVLCAAPSYIKKHSMPTTISELE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSGI 241
           KH  +        C+    W   +     + +I      +  +I       Q  + G GI
Sbjct: 186 KHFWV--------CLP---WQRQLKLYDAQQKIHTFNAQTRFTISNSDNMTQAAIAGHGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           A+     + D   N  LV +M +V+  S   V+F  P+    T K   F +F+
Sbjct: 235 AIKSRLAINDELKNGTLVEVMPNVLAQSDAPVWFLRPQNSLTTRKTDVFFDFM 287


>gi|299066284|emb|CBJ37468.1| Transcriptional regulator, LysR family [Ralstonia solanacearum
           CMR15]
          Length = 322

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 8/220 (3%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           L ++ +++S+ ++ LE  +G++L  R  R L LTE+GS   R        L+T    +  
Sbjct: 33  LGITSAAVSKNVASLEKALGVRLMNRTTRTLKLTEEGSAFLRQARVALEALDTAIDTVAA 92

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
             V PSG++RI+T+   G+  L   L   L  YP + +++  D++ +D+  D  D AIR 
Sbjct: 93  QRVVPSGRVRISTSWAFGREQLMPALPGLLSRYPALSVEVDFDDRIVDLVRDGYDLAIR- 151

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT----FGDLIPKCM 202
              I  S+L+ R +  +++   A+P YL     P + Q L  H LI      G + P   
Sbjct: 152 GGSIPDSALVSRPIFRLNLVLVASPDYLARHGVPQTPQALRSHRLIARRFLGGRVAPWSF 211

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              +   T   P      + L +++  S++Q    G GIA
Sbjct: 212 RAEDSSITTLDPTDS---AVLTLSAPESVVQAACDGVGIA 248


>gi|187926987|ref|YP_001893332.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241665316|ref|YP_002983675.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728741|gb|ACD29905.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240867343|gb|ACS65003.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 305

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 121/250 (48%), Gaps = 15/250 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+++ LET++G +L +R +  +++T  G 
Sbjct: 4   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRVAELETQLGTRLLHRSSHRVSVTPVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + LL   L EF   +P ++I
Sbjct: 64  AVYRHAREMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLLARWLAEFADSHPKLRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L L N  +D+     D AIR    P+ S  ++ R L        A+P  +    EP + 
Sbjct: 124 ELDLSNTYVDLIEQRIDVAIRAATGPLPSREVVARHLAVSPRVLVASPALVARVGEPATP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYLSIMQYCVL 237
            +L+    +  G L  +C    +W+    R      PI  PR +    ++ L++ +  + 
Sbjct: 184 ADLENTPCLGQGALT-RCR---DWVLLDARGHRMVLPI-RPRFAA---DNLLALREAAIA 235

Query: 238 GSGIALLPDY 247
           G G+A+LP +
Sbjct: 236 GLGLAILPQH 245


>gi|186471936|ref|YP_001863254.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184198245|gb|ACC76208.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 313

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 10/272 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR+F  VA  GSFT AA+QL +S +  +R ++ LE  +  +L  R  R +TLTE G   
Sbjct: 6   SLRMFVKVAELGSFTGAADQLKVSSAVATRSVASLEERLDARLLQRTTRSVTLTEAGRLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   ++  +  L  ++  PSG LRIA    +G   L   L  +   +P +  Q+
Sbjct: 66  LDRVRTIVDDIDDVEGGLLAATGVPSGTLRIAVQGSVGAGYLAKLLSAYTERHPRVVPQV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I  +  I +     D A+       + S++ R    + M   A+P Y        ++ ++
Sbjct: 126 IFADGPISLVEGRFDAALTNDTYPHAGSVVVRAFAHLKMTLVASPRYTPGIHRIANLTDI 185

Query: 187 DKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           D   ++T  D       D    WL T          + +  N+   + +  + G G+AL+
Sbjct: 186 DPLVMLTLDDGTTGTEHDPVRRWLDT-----HTAHATRIHANNSDMLRRMAIEGMGVALV 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           P  +V+   D+ +LV +  +   PS  +   Y
Sbjct: 241 PAVLVEDDLDDGSLVPVSSETALPSMGLSVAY 272


>gi|83858249|ref|ZP_00951771.1| transcriptional regulator, LysR family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83853072|gb|EAP90924.1| transcriptional regulator, LysR family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 310

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 129/284 (45%), Gaps = 8/284 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  DW+++R F   A+ GSF+ A+  L L+Q ++SRQ+S LE  +G+ LF R  R + LT
Sbjct: 15  VDLDWNQVRAFLATAQEGSFSAASRALGLTQPTLSRQVSALEAHLGVTLFERGTRSMALT 74

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      +        +  +  S    GK+ I  T     + L   ++      P
Sbjct: 75  EAGQALLSPAKVMLDGALDLSLAAEGRSTSMQGKVSITATSLFAMSYLPPVIEALRHRAP 134

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ +++I  N   D+    AD A+R  +P +   LI R +       YA+  Y++    P
Sbjct: 135 ELTLEVIASNSLQDLRRREADIAVRHVRPSE-DELIGRLIGEHTAGLYASQGYVEQRGAP 193

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ ++  H+ + F D + + +E +  L     P  + R+        L++++    G G
Sbjct: 194 SALADIHGHDFLGF-DNLDQALEVYQQLGLKVTP-DQLRVFSGHGEVLLAMVRQ---GLG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           + +LPD    +   L  ++ D +   F V+      L+   +++
Sbjct: 249 LCILPDGEFCE--GLEPVLADQVRVDFPVWLVTHRELQTNPRIR 290


>gi|148255252|ref|YP_001239837.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146407425|gb|ABQ35931.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 347

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 118/260 (45%), Gaps = 10/260 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++  W+ LR F + AR  SF +AAE L L+ +++ R+I  LE E+G K+F R   GL+L+
Sbjct: 21  LNASWEDLRAFLLCARHQSFRNAAEVLGLTGTTLMRKIDRLEEELGFKVFIRDQSGLSLS 80

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L     E   +L          +    G +R+A T   G   +   L +F   Y 
Sbjct: 81  DEGRSL-LFDVEQMERLSFNIFRRASLATDSQGSVRVAVTEGPGNFWILPRLIDFQKTYR 139

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L    +  D+S   AD +I+  +P     ++  KL  +H+H + +  Y      P
Sbjct: 140 RITVELSCAMEQADVSRLEADVSIQFARPTNPDVIVS-KLGRLHIHGFVSEAYRDAYGLP 198

Query: 181 LSIQELDKHNLIT-FG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S+ +L  H +I   G  L          L ++D  +G      +  NS ++++     G
Sbjct: 199 TSLADLRNHRIIKQHGVQLDETGYARILGLDSLDGIVG------ISTNSSVAVLYAVERG 252

Query: 239 SGIALLPDYIVKDNPNLVRI 258
           +GI  LP   V     LV +
Sbjct: 253 AGIGFLPTSAVALGAPLVPV 272


>gi|134293804|ref|YP_001117540.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136961|gb|ABO58075.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 309

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 139/290 (47%), Gaps = 21/290 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR  SFT AAEQL ++Q ++SRQI  LE   G  LF RHA+GL LT +G +L 
Sbjct: 29  LQIFSTVARHRSFTRAAEQLCVTQGAVSRQIQALEAHYGFPLFKRHAKGLLLTPEGEQLL 88

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V +E + ++E   ++L       +  L++ T +      +   +  F   +PD+ +Q+ 
Sbjct: 89  PVVNESFARIEDISMKLTRQRTDLA--LKVPTCV---IRWMLPRIMRFQGEHPDLHVQIT 143

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D S +  D AI +      + ++   L    +    AP  L++     ++ +L
Sbjct: 144 TAWQHVVDFSTEPFDAAI-VYGTSPGAGVVALPLFDERLTPVCAPE-LRHAAPLDAVGDL 201

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---MQYCVLGSGIAL 243
            +H L+          +  +W A ++   GE  +   +  ++ ++       + G G+A+
Sbjct: 202 VRHTLLH------PTRDHRDWRAWLEH-AGERGVDAQRGPTFDTLDLATNAAMQGFGVAI 254

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               +V D+     L R  + V+      YF YPE++ +  K++AF ++I
Sbjct: 255 GDVTLVDDDVRAHRLERPFDIVLETGARYYFVYPESIGSQQKIRAFSDWI 304


>gi|300906662|ref|ZP_07124351.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300958128|ref|ZP_07170286.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300315194|gb|EFJ64978.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300401563|gb|EFJ85101.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
          Length = 305

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L+             +W  T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTLL-------HDASRRDW-QTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR  I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQRILAKA 292


>gi|307727396|ref|YP_003910609.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587921|gb|ADN61318.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 301

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 129/305 (42%), Gaps = 44/305 (14%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +  +S  I  LE +VG  L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMTSFTRAAESLGIQKGRVSLVIRELERDVGATLLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++   ++  Q     +     G+LR+    +L ++++   L + +  +P++Q
Sbjct: 63  RAFYSRARDLLADVQELQSMFSSNGTPLRGRLRVDMPTELARSVVVPALPQLMAAHPELQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  PI   SLI R L  + M   A+P YL     P  +
Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRL-GPIADESLIARPLGKLRMTNAASPSYLARHGIPHRL 181

Query: 184 QEL--DKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNS--------- 227
            +L    H ++ +   +      +     N  AT+  P        +QVNS         
Sbjct: 182 DDLLNQGHRMVHYTLTLGAKHAGWEYPHGNGYATLALP------GAMQVNSVQTYHAAGL 235

Query: 228 ---------YLSIMQYCVLGSGIALLPD---------YIVKDNPNL---VRIMEDVITPS 266
                    YL++  +   G+ + +LPD          +V    NL   VR   D I   
Sbjct: 236 AGIGLIQAGYLALAHHIQSGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRTFMDWIEGV 295

Query: 267 FTVYF 271
              YF
Sbjct: 296 LAPYF 300


>gi|167646339|ref|YP_001684002.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167348769|gb|ABZ71504.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 298

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 128/302 (42%), Gaps = 32/302 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   ARS SFT AA +L L+QS++SRQI  LE  +G  LF+R  + + LT  G+   
Sbjct: 14  LRAFEAAARSQSFTIAARELSLTQSAVSRQIRALEAMLGADLFHREKQKVRLTLAGATYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E   ++ +  +  + + V   G L +A         L   L  F + +PDI + L+
Sbjct: 74  RDIREALTRISSATLGFRANPV--GGSLNLAVLPLFAARWLAPRLPAFAVAHPDITVNLM 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D   D  D AI         + + R +  I      AP     C  PL   +L 
Sbjct: 132 TRPTPFDFRADSVDAAIHYGLAEWPGAEVSRLMAEI-----VAP----VC-TPLLKAKL- 180

Query: 188 KHNLITFGDLIPKCMEDFN--------WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              L T  DLI   +            W   ++   GE  +  + ++ +   ++    G 
Sbjct: 181 --GLRTAADLIEAPLLHLTSRSDAWERWFGEMEIDAGE--VRGMLLDQFTLSLEVARNGL 236

Query: 240 GIALLPDYIVKDNPNLVR--IMEDVITPSFTV---YFCYPEALKNTGKLKAFRNFIFLKA 294
           GIALLP ++++  P L R  ++  V  P       +F +P   +    L+ FR +I  +A
Sbjct: 237 GIALLPVFLIE--PELARGELVAAVDAPMHNAEAYHFVWPHTHQTHWPLEIFRRWITAEA 294

Query: 295 RD 296
            D
Sbjct: 295 AD 296


>gi|28868009|ref|NP_790628.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851245|gb|AAO54323.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331018345|gb|EGH98401.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 314

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 127/273 (46%), Gaps = 13/273 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLAVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHIRMGCTEGFGSFFITPQLSHFLDNYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N     
Sbjct: 131 ISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQEYLDNHAPIQ 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVLGS 239
              +L +H  I++ D +    E   +L+ +  P  +      Q+ S   I QY   + G 
Sbjct: 190 RKADLSEHVFISYVDDLAFSSE-LLYLSNL-LPNAQA-----QLRSTSVIAQYTAALQGR 242

Query: 240 GIALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
            +A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 243 ALAILPCFLAAQDPRLLPVLTEEVNITRQFWMY 275


>gi|254254194|ref|ZP_04947511.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124898839|gb|EAY70682.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 290

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 138/290 (47%), Gaps = 21/290 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  VAR  SFT AAEQL ++Q ++SRQI  LE   G  LF RHA+GLTLT +G +L 
Sbjct: 10  LQIFSTVARHRSFTRAAEQLCITQGAVSRQIQTLEAHYGFPLFRRHAKGLTLTPEGEQLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V +E + ++E    +L       +  L++ T +      +   +  F   +PD+ +Q+ 
Sbjct: 70  PVVNESFARIEDISSKLTRQRTDLA--LKVPTCV---MRWMLPRIMRFQGEHPDLHVQIT 124

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D S +  D A+ +      + +    L    +    AP  L++     ++ +L
Sbjct: 125 TAWQHVVDFSSEPFDAAV-VYGTSPGAGVFALPLFDERLTPVCAPE-LRHALPLDAVGDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---MQYCVLGSGIAL 243
            +H L+          +  +W A +D   GE  +   +  ++ ++       + G G+A+
Sbjct: 183 ARHTLLH------PTRDHRDWRAWLDY-AGERGVDAERGPTFDTLDLATNAAMQGFGVAI 235

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               +V D+ +   L R  + V+      +F YPE + +  K++AF ++I
Sbjct: 236 GDVTLVDDDVSARRLERPFDIVLETGARYFFVYPETIGSQQKIRAFSDWI 285


>gi|241203558|ref|YP_002974654.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857448|gb|ACS55115.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 296

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 127/291 (43%), Gaps = 32/291 (10%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR G F  AA      ++++SR+++ LE+ + ++LF R AR L LTE+G  L   T
Sbjct: 9   FNLVARHGGFGKAARATGRPKATLSRRVAELESGLDLRLFERGARNLKLTEEGRALFERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L+ T   +     KP G+LRI+  +   Q  +      F L YP++++++  ++
Sbjct: 69  GALLAELDETASAIASGGQKPKGRLRISAPLHFSQTAMGRIAAGFTLQYPEVRLEVTSED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  IR+  P    SL+ R  +   +   A+P   +               
Sbjct: 129 RSVDMIEEGYDLVIRV-NPDPDESLVGRVFLRDRLVVVASPDLPRP-------------- 173

Query: 191 LITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVL------GSGIA 242
             T G   P          T  V  P G    S +++ + LS+    ++      G G  
Sbjct: 174 --TGGRAAPGVARGAGEAQTWQVKTPGGR---SAIRIETVLSLATLIMVRDAVRAGVGAG 228

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP  +V     +  LV    D+  P   ++  YP     + ++ AF +F+
Sbjct: 229 RLPISLVSHDLADGTLVN-WGDMDAPEIALWTLYPSRRLLSARVSAFLDFL 278


>gi|86356764|ref|YP_468656.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280866|gb|ABC89929.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 306

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 100/197 (50%), Gaps = 1/197 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +   +D++R F  VA   + +  A +L + QS+++R ++ LE  VG+ L  R  R +TLT
Sbjct: 4   VGLSFDRMRTFVRVAERANLSMVARELGVGQSTVTRHLNELEEAVGVALLSRTTRRVTLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+GS+ +    ++   +E    E +++   P+G +R++ T  LG   +   + +F   +P
Sbjct: 64  EEGSRYYTNCLQILRLVEQAAEEARDARQAPAGAVRLSCTAALGVMHVTRMIFDFQDRHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ L L ++ ID+  +  D A+RL  P+  SS+    +         AP YL     P
Sbjct: 124 DIRVDLNLTDERIDLVREGVDVALRL-GPLADSSMKLHAIGESQRLLVGAPAYLSAQGRP 182

Query: 181 LSIQELDKHNLITFGDL 197
               +L ++  +   ++
Sbjct: 183 ERPADLSRYETVVMSNV 199


>gi|17548529|ref|NP_521869.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430776|emb|CAD17459.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 305

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 116/248 (46%), Gaps = 15/248 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LET++G +L  R +  +++T  G 
Sbjct: 4   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAALETQLGTRLLQRSSHRVSVTPVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + L+ G L  F    P ++I
Sbjct: 64  AVYRHAREMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLVSGWLAAFAQANPKLRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L + N  +D+     D AIR    P+ S  ++ R L         +P  +    EP + 
Sbjct: 124 ELDVSNTHVDLIEQRIDVAIRAATGPLPSRDVVARHLAASPRVLVGSPALIARVGEPDAP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYLSIMQYCVL 237
            ELD    +  G L    M   +W+    R      PI  PR++    ++ +++ +  + 
Sbjct: 184 AELDALPCLGQGTL----MRSRDWVLLDARGQRHVMPI-RPRMAA---DNLIALREAAIA 235

Query: 238 GSGIALLP 245
           G G A+LP
Sbjct: 236 GLGFAVLP 243


>gi|297538023|ref|YP_003673792.1| LysR family transcriptional regulator [Methylotenera sp. 301]
 gi|297257370|gb|ADI29215.1| transcriptional regulator, LysR family [Methylotenera sp. 301]
          Length = 282

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 117/256 (45%), Gaps = 19/256 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F V AR  S + AA QL +  ++I+R+I+ LET + +KL  R  R   LT+ 
Sbjct: 2   FDWEDLRYFAVFAREKSLSAAARQLKVDHATIARRITALETSLNLKLVDRRPRSYLLTDN 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +  + +++  +            +  +G++ ++    +   L+  +L +    YP I
Sbjct: 62  GKHIAALGAKMEDEAFAVGRAAMAGQLDLTGEVSVSAPPTMANALIAPHLGKLRRQYPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+LI + +   +    +D A+R+ +P + ++L+ RK+ ++    YA+  Y       LS
Sbjct: 122 HIRLIGETRIASLLHRESDIAVRMFQPTE-NNLVARKVGSMSFSMYASIDY-------LS 173

Query: 183 IQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               + +  I F     + ME+     WL    +     R   L+     +     + G 
Sbjct: 174 TTPPENYTFIAFD----RSMENIIQQKWL----KEFANTRPIVLRTFDLETQRIAAMRGV 225

Query: 240 GIALLPDYIVKDNPNL 255
           G+A LP Y+    P L
Sbjct: 226 GVAALPYYVANREPGL 241


>gi|218459013|ref|ZP_03499104.1| transcriptional regulator, LysR family protein [Rhizobium etli Kim
           5]
          Length = 220

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 1/192 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT  
Sbjct: 7   FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++      ++  + E  + +L + S+   G +R++             L  F   +P +
Sbjct: 67  GTRFVETAEKMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLHRFAAQHPHL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+   + + +S   AD ++ L +P +       KL   H+  Y +  YL    +   
Sbjct: 127 SLELVTIQQIMSLSRKEADLSVVLDEP-KGGPYFAEKLTDYHLQIYGSRDYLAKAPDITC 185

Query: 183 IQELDKHNLITF 194
             +L +H  +++
Sbjct: 186 RDDLLEHPFVSY 197


>gi|171315922|ref|ZP_02905151.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171098925|gb|EDT43715.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 296

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 125/290 (43%), Gaps = 15/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 13  LLVFEAAARHESYTRAADELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 73  VELSGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCREPLSIQ 184
                ID   D  D AI +        L   +L    + A A+P      K CR   +  
Sbjct: 132 SRIGGIDFHTDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIASPDAAGRRKACRRAPAWA 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243
                 L+          E F+      R   E RI    ++ S+L  +Q    G GI L
Sbjct: 191 V--GQTLLGVTSNQHAWAEWFSHFGLDHR---EMRIGPSFELTSHL--IQAVRAGMGIGL 243

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +P  +V+D  + N +  + D IT   + Y  YP        L AFR ++ 
Sbjct: 244 VPKVLVEDELSRNELVSIGDAITSQRSYYLVYPPENDTLPSLAAFREWLL 293


>gi|295700226|ref|YP_003608119.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439439|gb|ADG18608.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 345

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 127/270 (47%), Gaps = 13/270 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL-HRV 69
           F  VA+ GSF  A E+L + +SS+SR +  LE ++  +LF R  R   LT +G +     
Sbjct: 36  FMAVAKEGSFAKAGERLGVGRSSVSRSVQRLEKQLSTRLFLRTTRTTRLTREGERFFEHC 95

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V H +      L      P G LR+++ I  G+N++   L +F  LYPDI ++L+LD
Sbjct: 96  NLGVAHIVGAVNDMLDLRHGPPRGLLRVSSGIGFGRNVVAPLLLKFSELYPDISVELLLD 155

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +K +D +    D A R    +  S ++ ++L+ + +   A+  Y +    P S+ EL +H
Sbjct: 156 DKPVDFAGGQIDVAFR-DGHLADSRIVAKRLIPMQLIVCASRSYAERHGLPSSLGELGQH 214

Query: 190 NLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             I       + +E   W   VD   + +  P  S L  N    + +  + G GIA +P 
Sbjct: 215 ECINMRHSTGRVLE---WEFMVDGRTQKLLPP--SKLTFNDADLVREAVLRGRGIAQMPA 269

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           + + D      LV  +   ++   + Y CY
Sbjct: 270 HQIWDYARRRELVMTLNQHVSNERSYYICY 299


>gi|254472427|ref|ZP_05085827.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211958710|gb|EEA93910.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 307

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 134/301 (44%), Gaps = 24/301 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS- 64
           D L  F   AR GSFT AAE+L L+Q ++S+Q+  LE  +G++LF R  + + LT+ G  
Sbjct: 10  DCLIAFESAARHGSFTRAAEELFLTQGAVSKQVRLLEGRLGVELFKRIRQRIVLTDAGRI 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH +   +      T+  +  S       L +A     G   L   L  F   YP+   
Sbjct: 70  YLHDIRGTLEKMTSATRQVM--SFAGSEDVLNVAVLPTFGTRWLARRLPRFHERYPEASF 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCREP 180
            L +  +  D S++  D AI   +P+ + +    L Q +++ +   A+   H L+   + 
Sbjct: 128 NLSVRLRPFDFSVEPFDGAIHYGEPVWAGAIAEPLFQEEVIPVASRAFRDRHSLRTPEDL 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLG 238
           + +  L +          P   + +  LA V  D     PR      + +  I Q    G
Sbjct: 188 VDVMRLHQSTR-------PDAWQKWFSLAGVETDGAFQGPRF-----DQFTMISQAAASG 235

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+AL+P + +++      LVR+ +  +  S   +F YPE       +K+F+ ++  +A+
Sbjct: 236 LGVALVPKFFIEEELAAGTLVRLFDISLKLSSAYHFVYPENRTLRPVVKSFKAWLQEEAQ 295

Query: 296 D 296
           +
Sbjct: 296 E 296


>gi|206562602|ref|YP_002233365.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038642|emb|CAR54602.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 306

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 131/276 (47%), Gaps = 18/276 (6%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L 
Sbjct: 28  ELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLEYARRILDQMDELGELLG 87

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
            +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  IR
Sbjct: 88  SAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCIR 147

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
             +P   + ++ R+L        AAP YL     P +  +L +HN I     I +  E +
Sbjct: 148 FGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGTPGTPHDLTRHNCIG----IRQGDEGY 202

Query: 206 N-WLATVDRPIGEPR-ISCLQVNSYLSI------MQYCVLGSGIALLPDYIVKD---NPN 254
             W  T  R  G  R    +++N  L+       +++ + G GI +  ++ ++D   +  
Sbjct: 203 GVWRLTSGR--GAARHTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDLRDYLADGR 260

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LV ++ D  TPS  +Y  Y +  + + +++AF +F+
Sbjct: 261 LVVVLPDHETPSADIYAVYAQRHQMSARIRAFVDFL 296


>gi|190576327|ref|YP_001974172.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014249|emb|CAQ47893.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 300

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 131/279 (46%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+++ F  V  SGS + AAEQL  + S +SR +  LE ++G  L  R  R L LT
Sbjct: 1   MKTTLDEMQAFLAVIDSGSISAAAEQLGQTPSGVSRALGRLEDKLGTTLLTRTTRRLHLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    R    +   +E+ + ++     +P+G+LR+   +    +++   +  +   YP
Sbjct: 61  AEGEAYLRHARAIIDAVESAEEQMAARRERPAGRLRVDAAMPFVLHVIAPLVAGYRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q++L    + ID+     D AIR+  P+  S+L  R L    +   A+P YL    EP
Sbjct: 121 EVQLELNSSERYIDLLERRTDLAIRI-GPLADSTLHARPLGRCQLRLVASPAYLAAHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            S+  L +H L++F +  P+ +  +      D   G  R+   + V+S  ++ +  V G 
Sbjct: 180 ASVAALGQHTLLSFNE--PESLNHWPLPGDAD---GLLRVRPDIAVSSGETLRRLAVEGV 234

Query: 240 GIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYF 271
           GI  L D++   +       P L     DV  P   VY+
Sbjct: 235 GITCLSDFVTDRDRAAGTLVPVLATQTLDVYQPIHAVYY 273


>gi|296115481|ref|ZP_06834114.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977964|gb|EFG84709.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 297

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 14/277 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR  SFT AA +L +S+S++S  I  LE  +G++L  R  R + LTE G++
Sbjct: 7   NDLLAFMAVARERSFTRAAAKLGVSRSALSHTIRNLEERLGLRLLARTTRSVGLTEAGAR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +  + ++E   + +     +P+G +RI  T      +L   + E L  YPDI+I+
Sbjct: 67  LLDTIAPRFDEIEAELVAMSSLRTRPAGTIRITATEHPTYTVLWPRVSELLRQYPDIKIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +++D    DI  +  D  +R+ + I    ++      +      +P Y+     P + Q+
Sbjct: 127 IVVDYGLRDIVAERFDAGVRVGESIARDMIVVPISPALRSAVVCSPAYVARHGVPATPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  H  I     +P     F W       +++  +  P +    VN+    +   + G G
Sbjct: 187 LTTHACINM--RLPTHDTIFEWEFEKQGRSLNMRVDGPAV----VNTLALRLNAALDGVG 240

Query: 241 IALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYP 274
           +A +P DY +   +   LVRI+ED   P    +  YP
Sbjct: 241 LAYMPEDYAMPHIEAGRLVRILEDWCDPYPGYHLFYP 277


>gi|294139806|ref|YP_003555784.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293326275|dbj|BAJ01006.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 313

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    +     +   +    G L++  +   G   +   L +F+  +P++++Q
Sbjct: 66  LYAQGEELLRDADQAIASVHNLNDATRGVLKVGISQSFGTMHIIPALPDFMATHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y++   +P   ++
Sbjct: 126 ISLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLAASPSYIEKHGQPDRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  L
Sbjct: 185 LVDHNCLVYHG---EWHEHSVWQFKQGEDYCEIGVSGNFRVDNAPALKSAAISGLGVVYL 241

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV +++D  +T    +   YP       K+ AF +FI
Sbjct: 242 ASYLLEDEVEKGTLVPLLQDWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|221197007|ref|ZP_03570054.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203680|ref|ZP_03576698.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175846|gb|EEE08275.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183561|gb|EEE15961.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 300

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 130/298 (43%), Gaps = 24/298 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V     F  A+  L + +S++SR+I+ LE  +G++L  R  R  ++TE G
Sbjct: 3   DLNDLYFFAQVVDYKGFAPASRALGIPKSTLSRRIAMLEARLGVRLVQRSTRRFSITEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +  ++E  Q  +   + +P G +R+   + +    +   L EF+   P + 
Sbjct: 63  QRYYTHCKAMLVEVEAAQQAIDRITGEPQGIVRVTCPVAMLHARIGAMLAEFMAATPRVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P+Q S L+ R L        A+P  + + R    
Sbjct: 123 VHLEATNRVVDVVGEGIDLAIRVRPPPLQDSDLVMRVLGERAWCLLASPALIGD-RTVAM 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235
             +LD    + FG   P+      W   +D P G        PR      +  +S+    
Sbjct: 182 PADLDGWPSLDFGPAQPQ----HTW--QLDGPDGVHAAVRHTPRFVT---DDMISLRHAA 232

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V G+GI  LP  +V D      LVR++ +    S  ++  +P      G L A R  +
Sbjct: 233 VAGAGIVQLPLMMVADELRRGELVRVLPEWAPKSGIIHAVFP---SRRGLLPAVRALV 287


>gi|170079311|ref|YP_001735949.1| transcription regulator [Synechococcus sp. PCC 7002]
 gi|169886980|gb|ACB00694.1| transcription regulator [Synechococcus sp. PCC 7002]
          Length = 273

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 90/169 (53%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           +++ +S++++ +  LE ++ ++L +R  R +T T  G   +    ++   LE  ++   +
Sbjct: 1   MNVGRSAVNKLVIALENQLQVQLLHRSTRKVTPTPTGLAFYEKCVQILADLEEAELAASQ 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
              +P G LRI   +  GQ  +   + +F+  YP +QIQL L+++ +D   +  D  IR+
Sbjct: 61  LHGEPKGLLRINAPMTFGQMQVAPLVAKFMAQYPQVQIQLTLEDRFVDAIAEGYDLVIRI 120

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG 195
            +P++S+SLI   L    +   AAP YL+    P S  +L  HN + +G
Sbjct: 121 AEPVESASLISHPLCETKLILCAAPSYLERHGIPQSPGDLAHHNCLRYG 169


>gi|168235808|ref|ZP_02660866.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194737898|ref|YP_002114706.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|204927892|ref|ZP_03219093.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|194713400|gb|ACF92621.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197291155|gb|EDY30508.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|204323234|gb|EDZ08430.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 301

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|241207249|ref|YP_002978345.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861139|gb|ACS58806.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 298

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 135/309 (43%), Gaps = 52/309 (16%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +R F  VAR GS   AA+ L ++ +++ R+I+ LE  +G ++F +   G  LT  
Sbjct: 2   IDWDDIRYFLAVARGGSVRAAAKGLGVNHATVLRRIAQLEERLGAQMFEKLPSGYRLTAA 61

Query: 63  GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G ++  + +++    H+LE T++  ++ SV+  G LR+     L  +LL  +  +F  L+
Sbjct: 62  GEEVLELANQMEASSHELE-TRVFGRDQSVR--GLLRVTLAPPLATHLLMPDFADFARLH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI+++++   +  +++   AD AIR+        +  RK + +++H    P        
Sbjct: 119 PDIEMEIVSSGELANLTNREADVAIRV--------VYDRKTLPLNLHGLKGPDI------ 164

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI----------------GEPRISCL 223
                         FG +   C     W A    PI                GE R + +
Sbjct: 165 --------------FGGVYMSCDRLAAWRAGAPDPIRWIVISIHGIPDWASEGEIRTTGV 210

Query: 224 QVNSYLSIMQYCVL--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG 281
              +     Q   +  G GI  LP ++   +P LVR+    +    T++       + T 
Sbjct: 211 PFRTTDGEAQIVAVRQGLGITTLPCFVGDADPLLVRVPGTDLHMYGTLWLLTQGETRKTK 270

Query: 282 KLKAFRNFI 290
           +++ F  F+
Sbjct: 271 RVRLFTEFV 279


>gi|330000231|ref|ZP_08303659.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328538054|gb|EGF64224.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 302

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 2/188 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR  SF+ AA +L +S S++S  + GLET +G++L  R  + +T T  G +L +  
Sbjct: 14  FMAIARHRSFSRAAIELGVSASALSHALKGLETRLGVRLLNRTTKSVTPTAAGEELVQSV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            + +  +E     L      P+G++RI   ++    LL   +  F+  YPDI+I ++  N
Sbjct: 74  LQPFDTIEGALESLNRYRNTPTGRIRINAAVEAANLLLAPVMPAFMDRYPDIEIDIVASN 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D++    D  IR    +    + +R    I     A+P YL+    P    +L  H 
Sbjct: 134 RMVDVTDAGFDAGIRYGGTVPEDMVARRLSADIRWVIAASPDYLERYGTPEHPDDLLHHR 193

Query: 191 LIT--FGD 196
            I+   GD
Sbjct: 194 CISNRLGD 201


>gi|212709405|ref|ZP_03317533.1| hypothetical protein PROVALCAL_00444 [Providencia alcalifaciens DSM
           30120]
 gi|212687920|gb|EEB47448.1| hypothetical protein PROVALCAL_00444 [Providencia alcalifaciens DSM
           30120]
          Length = 301

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 21/300 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  F  V   G F+ A   L + +S +SR+I+ LE ++ + L YR  R   +T
Sbjct: 1   MQYDLNDLYYFVKVVEYGGFSQAGAALGIPKSKLSRRIADLEQKLNVSLIYRSTRQFHVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++    V  + +     +      P G ++++  + L Q  LQ  L +F+  YP
Sbjct: 61  EIGQVFYQQCKNVVEEADIAHELICSVQTHPKGTIKLSCPVTLLQVYLQDTLIDFMAKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI +Q++  N+ +D+  +  D A+R+R  P+  S L+ + L        A+P        
Sbjct: 121 DIDVQILAVNRPVDVISEGLDLALRVRSLPLDDSGLMMKVLGYSRRILIASPSLFNEKGY 180

Query: 180 PLSIQELDKHNLITFGD------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
           P + ++L  + ++   +      L  K  +D +    V      P+++   +   L++ +
Sbjct: 181 PSTPEQLVDYPILANTEHSQRYTLSLKNSDDLSVTVHV-----TPKLATTDI---LTLYR 232

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V G GIA LP  +V+       LV ++     P   ++  YP      G L A + F+
Sbjct: 233 AAVKGLGIARLPQGVVEKELKRGELVEVLPHWQFPEDIIHAVYP---SRKGLLPAVQLFL 289


>gi|86144701|ref|ZP_01063033.1| Putative transcriptional regulator, LysR family protein [Vibrio sp.
           MED222]
 gi|85837600|gb|EAQ55712.1| Putative transcriptional regulator, LysR family protein [Vibrio sp.
           MED222]
          Length = 293

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 138/292 (47%), Gaps = 17/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  +G F+ AAE L +  + +SR +S +E+++G+ +F R  R + LTE+G +
Sbjct: 6   DDLEMVLTVVDAGGFSAAAETLDVQVAKVSRSVSKVESQLGVSIFNRTTRRVELTEEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      +++ + E+      P G+LR+        + L   ++ F   YPDI+++
Sbjct: 66  FVDSVRVGLQMIQSAEEEIVSRGELPKGRLRVDAASPFVFHQLVPLVQSFKEAYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    +H  A+P YL     P   ++
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LSDSTLHARPLGKSLLHIVASPDYLAKRGLPTKPED 184

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H ++ F G+ +       N     ++    P ++    ++  ++ Q  + G+GIA L
Sbjct: 185 LSSHQIVGFAGNKV------LNHWPLPNQSDVAPTVTA---SNGETVRQLVLAGNGIACL 235

Query: 245 PDYIVKDN---PNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++V+++     L+ I+E      T    V   Y ++   + ++ AF +FI
Sbjct: 236 SGFMVQEDMAAGRLIPILEQDKLANTDRERVNAVYYKSSSVSKRISAFIDFI 287


>gi|167568591|ref|ZP_02361465.1| glycine cleavage system transcriptional activator [Burkholderia
           oklahomensis C6786]
          Length = 312

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + LTLT+ G +
Sbjct: 3   NALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLTLTDAGGR 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        +     +++ S      +L ++T        +   +  F+  +P+I ++
Sbjct: 63  YAQQVRAALTLIADATRDIRASDR--DKRLIVSTLPSFAARWITPRIGPFIERHPEIDLE 120

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 121 LRASDALVDFARDDVDVAIRFGYGVYPGLYVE-PLLDETFFPVCAP-TLNGGVLPETPAD 178

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 179 LARYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 233

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++AFR ++ 
Sbjct: 234 RSLAVPELAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLL 282


>gi|290474489|ref|YP_003467369.1| putative transcriptional regulator [Xenorhabdus bovienii SS-2004]
 gi|289173802|emb|CBJ80584.1| putative transcriptional regulator with periplasmic binding protein
           domain (LysR family) [Xenorhabdus bovienii SS-2004]
          Length = 306

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 124/260 (47%), Gaps = 21/260 (8%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  + SFT AA+ L LS+SS+SR+I+ LE  +G +L  R  R + +TE G   ++ 
Sbjct: 12  IFARVVETLSFTEAAKSLRLSKSSVSREIAQLEVRLGTQLLNRTTRKIQVTEVGLSYYQY 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S + ++ ++ +  ++    +P G LR+   +  G   +   L  F+     + + L L 
Sbjct: 72  CSRILNEAKSAERFIRNFHDEPMGNLRLIAPVSFGSQCIVPALNNFIARNIHVSVDLELT 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ I+++ D  D AI + +      L+   L+ I    YA P Y+         ++L ++
Sbjct: 132 DRTINMTDDNYDIAIIVGRETPDHPLVM-PLIDITWGLYATPDYMSQFPPIEKPEDLPRY 190

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-------SCLQVNSYLSIMQYCVLGSGIA 242
           + + F               T+  P  + R        S  ++N+ +++M   + G+GIA
Sbjct: 191 DYLLFR----------GPAHTISLPFRKERQKLDIEVRSRFRINNSVALMSSALSGAGIA 240

Query: 243 LLPDYIVKDN---PNLVRIM 259
            LPDYI  ++     LVR++
Sbjct: 241 YLPDYIAHESVAEGKLVRLL 260


>gi|153211877|ref|ZP_01947724.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124116953|gb|EAY35773.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
          Length = 313

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 13/296 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G  
Sbjct: 5   NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ ++
Sbjct: 65  FLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  D+  +  D AIR  +P  S+ +      +      A+P YL      L   +
Sbjct: 125 LDLSDRLTDMYANPVDIAIRYGQPADSNLVAMLLCDSNERVLCASPEYLATHPPILHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + F  ++   + +  W+ + +   GE     +Q N   +    + +  V G GI
Sbjct: 185 LQHHNCLCF--MLADTLHN-KWILSRN---GETHSVVVQGNPACNDGEVVHRLAVKGKGI 238

Query: 242 A---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A   L+       +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K 
Sbjct: 239 ANKSLMDISQEIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREKG 294


>gi|71282643|ref|YP_269671.1| LysR family substrate binding transcriptional regulator [Colwellia
           psychrerythraea 34H]
 gi|71148383|gb|AAZ28856.1| substrate-binding transcriptional regulator, LysR family [Colwellia
           psychrerythraea 34H]
          Length = 294

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 133/301 (44%), Gaps = 36/301 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +RVF   AR GSF  AAE+LH++ ++IS QI  LE  +G  LF R  R + LT +G  
Sbjct: 9   NSIRVFDAAARLGSFKKAAEELHVTPTAISHQIKTLEEALGTLLFVRKTRVIQLTPEGKL 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI--- 122
           L      +  +L  T  E+  +       + ++TT       L  NL +F  LYPDI   
Sbjct: 69  LAETAYNILQQLTNTISEISNT----KNIITVSTTSSFAAMWLVPNLSKFNQLYPDIDVA 124

Query: 123 -----QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
                Q++ +  ++ ID+++ Y      L+  I         L T  +  YA P+Y+K  
Sbjct: 125 VKTGEQVEDLEKDRRIDLAIRYGTYDNSLKNSIL--------LTTEEIGVYATPYYIK-- 174

Query: 178 REPLSIQELDKHNLI-TFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYC 235
               SI  L   NL+ T  D   K + + +W     D    E      Q      I+Q  
Sbjct: 175 ----SINLLGSANLLETKWD--NKNLTEISWHTLFKDNNNHELVYKTRQFTQEHHIIQAA 228

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPS------FTVYFCYPEALKNTGKLKAFRNF 289
           + G GIAL+   +V++      +++   T +      F+ Y   PE    +  + AF+N+
Sbjct: 229 LAGQGIALVSSLLVQNAIEQGWLVKYHFTENRKKIDGFSYYLVIPEHNLRSKSIMAFKNW 288

Query: 290 I 290
           +
Sbjct: 289 L 289


>gi|71907024|ref|YP_284611.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB]
 gi|71846645|gb|AAZ46141.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 303

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 128/281 (45%), Gaps = 12/281 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D + L +F  V  +GSF+ AAE+  L +S++SR+I+ LET++G +L  R  R L +T
Sbjct: 5   MSLDANDLILFAQVMAAGSFSRAAERCGLPKSTLSRRITQLETKLGERLLTRSTRRLAIT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G ++      +  + E            P G LR++   D  +  L   L ++   YP
Sbjct: 65  EFGEQILDHAKRLLEETEAASAMALHRQGTPRGVLRVSLPPDFVELDLTPLLLQYASSYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +++++L L  + +D+  +  D A+R   R P   ++L+ RKL  +    YA+P YL    
Sbjct: 125 EVRLELDLSPRRVDLLAERFDLAVRAASRLP-DDTTLVARKLCEMQNGLYASPAYLARYG 183

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCV 236
            P    +L  H  +  G +I    E   W  +   D+  G P    L  NS         
Sbjct: 184 TPAKPADLLDH--VCLG-MISGTGEALPWQLSCGGDQWEGMPN-GPLAANSRSLQRDLAA 239

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
            G GI  L +       +   L R++ +   P+ T++   P
Sbjct: 240 HGLGIVGLAERFATQWIEQGLLKRVLPEWRLPTVTIWCVTP 280


>gi|33601319|ref|NP_888879.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33575755|emb|CAE32832.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 319

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 127/266 (47%), Gaps = 5/266 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR GSFT AA  L ++QS++S+ ISGLE  + I+L  R  R ++ T  G +L    
Sbjct: 12  FVTIAREGSFTRAAALLGVTQSALSQAISGLEARLRIRLLTRTTRSVSPTAAGERLLNAI 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              + ++E+   EL +   KP+G +RI     + +  +   L   +  YPDI+++  ++ 
Sbjct: 72  GHRFDEIESELDELTQLRDKPAGTVRITCGDHILRATILPRLTPLVREYPDIKLEFDVNY 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              DI  D  D  +RL   I    +       + M   A+P Y +    P   ++L +HN
Sbjct: 132 GFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPLRMAVVASPAYFEAHSTPGQPRDLLRHN 191

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            I       + +  +++L    R +       L  N+   +++  + G GIA LP+    
Sbjct: 192 CINMRMQSGRGVYAWDFLRR-GRRLNVRVDGQLIFNTTPPMVEAALAGLGIAALPEEEFA 250

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCY 273
              +N +LVR++ED   P F+ YF Y
Sbjct: 251 PHLENGSLVRVLEDWCEP-FSGYFLY 275


>gi|238799137|ref|ZP_04642591.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC
           43969]
 gi|238717008|gb|EEQ08870.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC
           43969]
          Length = 315

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 12/195 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  V R  SFT AA +L ++ S++S  I  LET +G++L  R +R +  TE G
Sbjct: 13  DLADLNAFRAVERLKSFTKAAVELGITTSALSHAIRNLETRLGVRLLNRTSRTVAATEAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    +  + ++     E+     +P G+LR+    D  + ++  +L +FL  +PD++
Sbjct: 73  ASLAMRLNVGFREIGEALDEINRLRDRPVGRLRLNILSDSARLIMARHLPKFLNQFPDVE 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYLKNC 177
           +++ +D++ +DI  +  D  IR          +   LV I++       A A+PHYL   
Sbjct: 133 VEISVDDRMVDIVSEGFDAGIRF------GGTVPEDLVAINLGEELKWVAVASPHYLYRR 186

Query: 178 REPLSIQELDKHNLI 192
             P++ ++L  H  I
Sbjct: 187 PIPITPEDLRSHACI 201


>gi|259417229|ref|ZP_05741148.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259346135|gb|EEW57949.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 302

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 97/188 (51%), Gaps = 2/188 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F  V   GS T     + L+ +  S++I  LE  +G++LF R  R LT TE G +
Sbjct: 5   ESLRLFCRVVELGSITSGGRDVRLTPAVASKRIKELEEHLGVRLFNRTTRSLTPTEAGKR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   +E  +  + + S +P G L+I   +  G+ ++   + +F+ L+P+I +Q
Sbjct: 65  FYQEALRILEVVEEAESVVAQFSGRPRGTLKITAPLAAGRLIIAPLVPDFVELHPEIDVQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + ++ +DI  D  D A  +  P   SSL  RK+  +     A+P YL+    P   Q+
Sbjct: 125 MRMSDRRVDILADGLDLAFFVGTP-SDSSLKMRKIAGVERVLCASPSYLERYGTPRVPQD 183

Query: 186 L-DKHNLI 192
           L  KHN +
Sbjct: 184 LMGKHNCL 191


>gi|171318970|ref|ZP_02908099.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095813|gb|EDT40763.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 306

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 131/277 (47%), Gaps = 18/277 (6%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 31  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 90

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 91  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 150

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R  +P   + ++ R+L        AAP YL     P +  EL +HN I     I +  E 
Sbjct: 151 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGAPGTPHELTRHNCIG----IRQGDEG 205

Query: 205 FN-WLATVDRPIGEPR-ISCLQVNSYLSI------MQYCVLGSGIALLPDYIVKD---NP 253
           +  W  T  R  G  R    +++N  L+       +++ + G GI +  ++ ++D   + 
Sbjct: 206 YGIWRLTGGR--GAARNTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADG 263

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LV ++ D  TP+  +Y  Y +  + + +++AF +++
Sbjct: 264 RLVVVLPDYETPAADIYAVYAQRHQMSARIRAFVDYL 300


>gi|107027813|ref|YP_625324.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693477|ref|YP_839010.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737246|ref|YP_001778506.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105897187|gb|ABF80351.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651477|gb|ABK12117.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169819434|gb|ACA94016.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 297

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 8/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +L     VAR  SFT AA QL +SQS +S  I G+ET +G++L  R  R +++TE G
Sbjct: 5   NYSELLALIAVARERSFTRAAAQLGISQSMLSHTIRGMETRLGVRLLTRTTRSVSVTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +V    ++ +E     + E    P+G +RI         LL   L + L LYP I+
Sbjct: 65  ERLLQVVEPRFNDIEAELKSIIEMRDVPAGTIRITAPEHAIDTLLWPRLAKILALYPQIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  D    DI     D  +RL   +       R          AAP Y  +   P   
Sbjct: 125 VEVNADYALTDIVQSRYDFGVRLGDELSKDISAVRIGPDQRFAIVAAPSYFASKPVPTKP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P       W L    R +       L  N    ++   + G G+A
Sbjct: 185 QDLVCHDCINL--RLPTLGNLCAWELGKGQRKVNVRADGRLVFNGIYQVLNAALSGYGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMED--VITPSFTVYF 271
            L + + +   +   LV +++     +P + +Y+
Sbjct: 243 YLHEDLAQPHLETGRLVPVLKPWWRTSPGYHIYY 276


>gi|330963515|gb|EGH63775.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 307

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 3/176 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VA +     A+    + ++++SR+IS LE ++GI+L  R ARGL LT+ G  L   T
Sbjct: 25  FMLVATNEGLGKASRASGIPKATLSRRISELEEQMGIRLIERSARGLKLTDAGEMLMART 84

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                ++       +E    P G+LR+A+ +   Q  + G   EF   YP++ I+ + D+
Sbjct: 85  EGPLGEVAEAMTATREGVATPRGRLRVASPVLFSQLAMGGIGAEFCAAYPEVIIEAVADD 144

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +D+  +  D AIR+  P   SSL+ R      M   AAP   +    P +I+++
Sbjct: 145 HLVDLVEEQFDVAIRI-NPAPDSSLVGRCFARDRMVVVAAPEVPRPA--PGAIRQI 197


>gi|171321343|ref|ZP_02910301.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171093380|gb|EDT38569.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 301

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 95/194 (48%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S+  + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDRLDGVTTFVQVVESGSFALAAERLDMTRSAAGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +  GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALSELEAAEADLDCGRNEARGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D   +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDPVEEGIDLAVRIGTLADSTSLAVRRLGTQYGSLGAAPSYLARHGMP 180

Query: 181 LSIQELDKHNLITF 194
            S+ +L  H  I +
Sbjct: 181 QSLDDLRNHRTIAY 194


>gi|194444641|ref|YP_002040929.1| regulatory protein LysR [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194403304|gb|ACF63526.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 301

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|157960941|ref|YP_001500975.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845941|gb|ABV86440.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 313

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    +     +   +    G L++  +   G   +   L EF+  +P++++Q
Sbjct: 66  LYTQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMARHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+     P   ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLAASPSYVAKHGVPSRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  ++   +V++  ++    V G G+  L
Sbjct: 185 LVDHNCLVYQG---EWHEHSVWQFKQGEDNCEIGVTGNFRVDNAPALKSAAVSGLGVVYL 241

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV ++ED  +T +  +   YP       K+ AF +FI
Sbjct: 242 ASYLLEDELEKGTLVPLLEDWQLTHNLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|254184760|ref|ZP_04891349.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184215352|gb|EDU12333.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 315

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 127/291 (43%), Gaps = 26/291 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L R  +E    +E+T   L  ++        G +RI+ +  +G  +L   +      +P
Sbjct: 67  AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L L N+  D+    AD A+R+ +P Q + LI R +  I +  +A   YL     P
Sbjct: 123 ALTIELALTNRVQDLLRREADIAVRMTRPGQ-TQLIARHIGGIELGLHAHRDYLARRGTP 181

Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               EL +H LI       F   I K    F+  A             L+ +S L+ +  
Sbjct: 182 RDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----------ALRTDSDLAQLAL 230

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
              G+GI      + K +P LVR++         ++    E L+ + + +A
Sbjct: 231 IRCGAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 281


>gi|66045633|ref|YP_235474.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256340|gb|AAY37436.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 304

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 137/291 (47%), Gaps = 13/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR  SF  AA++L +S + +S++I  LE  +G+ L +R  R +++TE G +
Sbjct: 8   DDLNVFVHVARRSSFVGAADELGMSAAYVSKRIRLLEQGMGVVLLHRSTRQVSITEDGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++   G+  +   L E    YP + I+
Sbjct: 68  VYEWAKGMLDSVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAARYPKLDIR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L        A+P YL     PL++ E
Sbjct: 128 LDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLADNWRVLCASPGYLDVHGTPLNLGE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H+ +    +I +    F  +  ++ P G   +     L  N      Q+C+ G G+ 
Sbjct: 187 LANHDCL----VIKERDRPFG-IWHLNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVL 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   + V+ +     LV+++ D    +  ++  +   L ++ K++    F+
Sbjct: 242 LRSLWDVRTDLAEGRLVQVLPDYRQDA-DIWAVHTSPLMSSAKVRVTVEFL 291


>gi|308048909|ref|YP_003912475.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307631099|gb|ADN75401.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 296

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 136/290 (46%), Gaps = 25/290 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F  V   GSF+ AAE L+L ++++SR+I  LE  +G  LF R  R L+LT  G +
Sbjct: 4   DDLKLFMTVVDLGSFSAAAEALNLPRANVSRRIGELEKRLGSTLFSRTTRKLSLTPVGQE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++    +   L+     ++  S  P GK+++    +  + +L   L++F+  YP I ++
Sbjct: 64  LYQRFETLMPMLDAALDSVRSQSRHPVGKIKLGLLPE-AELILHPLLQQFMERYPQISLE 122

Query: 126 LILDNKD----IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +        I + +D    A      +  SS + R L       YA+P YL     P 
Sbjct: 123 VTVSANGYQDLIQLGLDLCLHA----GVLADSSFVARSLGRFGRGLYASPDYLARHGHPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +++L +H L+ F    P   ++ +W    ATV      P  + L  NS   + +  V G
Sbjct: 179 CLEQLAEHRLLGFR--WPDGTQERHWQFEQATV------PVEATLLSNSMTYLRRATVEG 230

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE--ALKNTGKL 283
           +GI+ LP+        +  LV ++    +P   V+  Y +  AL +  +L
Sbjct: 231 AGISHLPELQAVQHVLSGELVPLLTQYQSPQEEVWLVYRDRVALNHAARL 280


>gi|315180407|gb|ADT87321.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 303

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 5/242 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  V + G  T AA+ L L +SS+SR+I  LE    +KL  R AR  TLTE G  
Sbjct: 5   EALTLFQHVVQLGGITQAADFLSLPKSSVSRKIKELEEHYNVKLINRSARHFTLTEAGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H  + +V   ++  + E+     + SGK+R+     + + L +  L+EF   YP IQ++
Sbjct: 65  FHVHSRDVLTHVDVLEQEMAAYGQEMSGKIRLLCVSPMIKCLGE-LLREFCKAYPHIQLE 123

Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L   +  +  I     D  ++L +P+  S+L+ +++  ++   YA+P YL     P + +
Sbjct: 124 LHAQEVVERTIPKRRFDLLVQLGQPV-ISNLVAQQIGAMYADYYASPTYLAEFGTPNTPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H LI F ++  +    F W  +  R +   R +   V+S          G GIALL
Sbjct: 183 DLLQHRLI-FREM-SQDEHKFWWFESPTRKLDLGRANMTIVDSPEMTFTLATQGFGIALL 240

Query: 245 PD 246
           PD
Sbjct: 241 PD 242


>gi|293611333|ref|ZP_06693630.1| predicted protein [Acinetobacter sp. SH024]
 gi|292826344|gb|EFF84712.1| predicted protein [Acinetobacter sp. SH024]
          Length = 301

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 130/289 (44%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T  G +L 
Sbjct: 10  MRIFCVAAESRNFKEAATQLGISPQVVTRAIKELEEQRGEILFYRSTRQIKITADGERLA 69

Query: 68  RVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   YPDI +  
Sbjct: 70  KQARFAVGSIDALLVKDTKEKRDEMRGTVRLTVSSVLGRKLVIPALAEFATRYPDIVVDC 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +   D+  +  D  IR    +  +  + ++L  ++ ++   P  +     P  I +L
Sbjct: 130 VLTDSHSDVIDERIDIGIRF-GFLPDNRYVAKELAKVNFYSVGTPELIDKVGMPKKIIDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           DK+ L    D   K    + W  T  R     +PR     + +     Q  + G G   +
Sbjct: 189 DKYPLTALVD--HKTGRYWPWTFTESRSFTPSKPRFITDDLEAEF---QAILAGVGFGHM 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V     +  L++I+ +  +P + +Y   P+      +++A  +++
Sbjct: 244 PGFLVLPWLRSGKLIQILHEENSPVWRLYLYRPQRGPTPLRIRALFDYL 292


>gi|222087146|ref|YP_002545681.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724594|gb|ACM27750.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 297

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 140/292 (47%), Gaps = 16/292 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA +   S++ +S+ +  LE ++G  L  R  R  ++TE G   
Sbjct: 6   RIRAFIDVVEAEGFSAAARKTGRSKALLSKYVRELEDDLGALLLNRTTRQFSMTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIA-----TTIDLGQNLLQGNLKEFLLLYPD 121
           +R  S++  +++     ++E++ +  G+LR++        D+GQ+L+     +F    PD
Sbjct: 66  YRTASDILKEIDNLADLVRENNQQLKGRLRVSVPRTFVDADVGQSLI-----DFAKENPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D++ +D+  +  D A+R+ K ++ S +I RK+    +H  A   +L   R P 
Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAVRVTK-LEDSGMIARKISDFRVHLCATREFLD--RYPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                D  ++    D   +   +  ++              L+VNS  + ++  + G GI
Sbjct: 178 LEHPSDLAHVPFIIDTNTRSQGNIRFVDADSTTFNVAISGTLEVNSPHATLRAALAGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A++PD+I +   ++  L+ +  D +     +Y  YP       K++ F +++
Sbjct: 238 AIVPDFIGRKAIESGQLLTLFNDYLPTDRGIYAVYPHRRYLPAKVRIFVDYL 289


>gi|146309444|ref|YP_001189909.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145577645|gb|ABP87177.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 298

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 129/303 (42%), Gaps = 29/303 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA++L+L+QS+I RQI GLE+ + ++LF R  RG+ LTE G    
Sbjct: 11  LVAFESAARHQSFTKAADELNLTQSAICRQIGGLESFLNVELFRRSRRGVVLTEAGVAYS 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +     +E   + L  +    S +L +  T   G   L   L+ F  L+P++ + L 
Sbjct: 71  RRVAAQLDAVERDTLALMGNQGTTSIELAVVPT--FGTQWLLPRLRTFQQLHPEVTVHLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +    +  + D AI       S +           H     H L  C   L   E  
Sbjct: 129 NRTRPFLFADTHFDAAIYYGDAEWSGT---------EAHFLMHEHLLPVCSPKLLGDEPV 179

Query: 188 KHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               I    L+ +    + W         +V R +  PR+    +     + Q      G
Sbjct: 180 TAERIAALPLLQQTTRPYAWRQWFAAQGMSVPRDMTGPRLELFSM-----LAQAARHEMG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +AL+P ++++   D  +LV  +   + PS     Y   PE    +  LKAFR+++ L+AR
Sbjct: 235 VALIPPFLIQRELDEGSLVIALNRAV-PSHDHAYYLMVPERKTESAALKAFRDWLLLQAR 293

Query: 296 DWK 298
            ++
Sbjct: 294 AYR 296


>gi|86359631|ref|YP_471523.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86283733|gb|ABC92796.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 302

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 127/292 (43%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR+GS T AA +L L+QS++SRQ+S LE ++G++LF R  + + LT  G    
Sbjct: 16  LAAFEAVARTGSVTAAARELDLTQSAVSRQVSALEDQLGVELFLRERQTMRLTLAGDSYA 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E   ++ +  + L+ +     G L +A     G   L   L  FL   P + I L 
Sbjct: 76  REIREALRRISSASLNLRAN--PHGGTLNLAILPTFGTRWLAPRLGRFLGANPGVTINLA 133

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--EPLSIQE 185
                 D  +D  D AI    P    + +   L++       +P +LK  R   P  +  
Sbjct: 134 TRLSPFDFRLDSIDAAIHFGHPHWPGAELT-LLMSERTVPACSPDFLKQHRISRPEDLLA 192

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +   +L T     P   E   W A     +    +  +  + + +  Q  + G G+ALLP
Sbjct: 193 VPLLHLTT----RPDAWE--QWFA--GNGVSFESVHGMLFDQFATAAQAAIAGLGVALLP 244

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +++++     +LV  ++  +      Y   P    +   L AFR++I  +A
Sbjct: 245 TFLMQEELRRGDLVAAVDREMESRERYYLACPSERADYAPLAAFRDWIVAEA 296


>gi|33593834|ref|NP_881478.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33563907|emb|CAE43166.1| putative LysR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332383253|gb|AEE68100.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 306

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 29/296 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F V AR  SFT AA++L ++Q ++S+Q+  LE  VG++LF    +GL LTE G    
Sbjct: 11  LQAFEVAARHNSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLWIRQGLVLTEAGRSYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +       ++E   +EL     +  G L +      G   L   L  F  L PDI ++ +
Sbjct: 71  KKIRAGLGQIEAATLELIAHQGR-GGTLHLTAMPTFGARWLIPRLAAFRRLRPDIHVEFL 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE---P 180
              +  D S    D A+R  + I   S    ++ R +V +             C E   P
Sbjct: 130 PHRQGYDFSTPELDAAVRFGEGIWPGSGADYIVGRDVVPV-------------CSERLVP 176

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLG 238
              Q  D  +L+ +  L+        W    ++   + R  +   + + Y  + Q    G
Sbjct: 177 GGCQ--DAADLLAY-PLLHHTSAMEGWREWFEQAGCDTRRSLEGARFDQYSLLSQAAAAG 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G+AL+P  +++D   +  L   ++  I      Y CYPE   ++  L+AFR ++ 
Sbjct: 234 FGVALIPRCLIEDELRDGKLHVPIQLPIRARQGYYLCYPEQKASSPTLQAFRGWLM 289


>gi|197251273|ref|YP_002146352.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197214976|gb|ACH52373.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 301

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|71278912|ref|YP_268511.1| LysR family substrate binding transcriptional regulator [Colwellia
           psychrerythraea 34H]
 gi|71144652|gb|AAZ25125.1| substrate-binding transcriptional regulator, LysR family [Colwellia
           psychrerythraea 34H]
          Length = 306

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 122/261 (46%), Gaps = 14/261 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V ++     A  ++ LS + ++ +I+GLE   G++L  R  R ++LT++G K +
Sbjct: 7   IELFVRVIKNEGLAAAGREVGLSPARMTARINGLEERYGVRLLNRTTRRISLTDEGRKFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  +  LQ      +G LRI    DLGQ  +   L  F+  +P I   L 
Sbjct: 67  VSCERILAEVEQAETSLQTGQTSFTGALRITAPSDLGQQHIAPVLSRFVEEHPSITPYLF 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D  IR    ++ S+LI R+L +      A+P YLK    P+  +EL 
Sbjct: 127 LSDSVVDLVGNGFDLGIRF-GSLKDSTLIARRLASNRRVLCASPDYLKRKGIPVLPEELI 185

Query: 188 KHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIAL 243
           +H+ +T   +  P     F   A      G   IS       N    I ++ + G+GIAL
Sbjct: 186 QHDCLTMVRMAEPLTTWHFQGTA------GNSSISIQGTRASNDGALIRRWAIEGAGIAL 239

Query: 244 LPDYIVKDN---PNLVRIMED 261
              + + ++     LV +M++
Sbjct: 240 KSYWDIAEDLKAKRLVTVMDN 260


>gi|312883487|ref|ZP_07743212.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368710|gb|EFP96237.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 308

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 110/240 (45%), Gaps = 8/240 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA+  SF+ AA+ L +S+  +SR I  LE E+   LFYR+ R ++LTE G +L 
Sbjct: 6   LDTFLSVAKMNSFSSAADHLGVSKGLVSRHIKALEVELSCTLFYRNTRNVSLTEAGKELF 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  E+       + ++ +   +  G +R    I LG NL +  + +F   YP++ + + 
Sbjct: 66  LIAKEIEVLRLGAEKKIHDLLQEDQGVIRFTAPISLGPNLCRAVIPKFRARYPNLNLDID 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--EPLSIQE 185
                 D+     D A+R    +   +L+ +    +     ++P +    R   P  +  
Sbjct: 126 FSTLIKDVEFGSMDIALRAYSEL-GDNLVAKDFGWMKNLVVSSPEFQSKHRIKAPSDLVG 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+       G+LI    + +   +  +  +  P    L  +SY  I+Q+ +LG G+A LP
Sbjct: 185 LE-----CIGNLINSDWDQWPLFSANNEKVVVPSGGKLACSSYDGILQFALLGEGVANLP 239


>gi|167841784|ref|ZP_02468468.1| transcriptional regulator [Burkholderia thailandensis MSMB43]
          Length = 305

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 121/255 (47%), Gaps = 11/255 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     +R F  VA + S T A + L++SQS I+  I GLE+E+G +LF RHARG+ LT
Sbjct: 1   MSLSVKSVRYFIAVAEAESVTGATQTLNISQSVITEAIKGLESELGAQLFVRHARGMVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +  R   ++   +   Q  L       +G+L +  T  +    L   L ++  ++P
Sbjct: 61  HAGHQFLRHAHQILAAVRNAQQALSARPDTKTGRLNVGVTSLMTGYFLPYLLDQYKRVFP 120

Query: 121 DIQIQLILDNKD-ID--ISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKN 176
            +++Q++ D +D I+  +     D A+ +   +Q+S  I+ + L+      +   ++   
Sbjct: 121 KVEVQVVEDQRDYIEHLLVNGELDVAVLIVSNVQNSQAIETESLIKAAWRLWLPANHALR 180

Query: 177 CREPLSIQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               +S+QE+    +I    D +      F W A   RP      + ++  S  ++    
Sbjct: 181 GLGSISLQEIANEGMIMLKVDELEDNTTAF-WRAAGLRP-----NTVMRTASVEAVRSLV 234

Query: 236 VLGSGIALLPDYIVK 250
             G+G+++LPD + +
Sbjct: 235 ATGAGLSILPDVLYR 249


>gi|146311533|ref|YP_001176607.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145318409|gb|ABP60556.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 299

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 143/301 (47%), Gaps = 22/301 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +A  GS T AA +L ++  S+S+ +  LE  +G  LF R  R + LT+ G 
Sbjct: 6   YNQIRIFQSIAHEGSITAAARKLEITPPSVSKALKLLEQHIGHPLFVRTTRRIELTDAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L + TS     LE     +++ + +PSG +RI  +      +L+  + EF   YP IQ+
Sbjct: 66  QLLQQTSRAVQSLENAVESIKDLNQEPSGLVRITLSRFAYLLILKPCMAEFCQSYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  +++  +  D  IR    ++ S + ++ +       YA+  YL     P    
Sbjct: 126 EISVYDGTVNMIDERFDLGIRFGDILEESVVARQLMKPFREGLYASAAYLAEHGTPKLPT 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV--- 236
           +L +H LI +       ++P  +ED     TV+       ++   +++ + +M   +   
Sbjct: 186 DLHQHQLIGYRFITNNRILPLMLEDKGEQLTVE-------MAGQIISNDIDVMADGIRSG 238

Query: 237 LGSGIALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK---LKAFRNFIFL 292
           LG G    P Y ++ D    + +M         VY  Y   LK+TGK   +KA  +F+ +
Sbjct: 239 LGIGRLFEPVYELQPDKAQFIPVMMSYWKTYPPVYLYY---LKSTGKAKRVKALIDFLIM 295

Query: 293 K 293
           K
Sbjct: 296 K 296


>gi|73539789|ref|YP_294309.1| DNA-binding transcriptional activator GcvA [Ralstonia eutropha
           JMP134]
 gi|72117202|gb|AAZ59465.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 309

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 134/290 (46%), Gaps = 19/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-KL 66
           LR F   AR  SF+ AA +L ++  ++S QI  LE E+G+ LF RH + + LT  G    
Sbjct: 18  LRAFEAAARHESFSRAATELFVTHGAVSHQIRALEEELGLPLFERHGKRVALTPPGRLYA 77

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R+   +    + T++ LQ  S     +L I+T        L   +  F+  +P++ ++L
Sbjct: 78  ERIRDALLQIADATRV-LQ--SGNRDKRLTISTMPSFAARWLMPRIGSFIERHPELDVEL 134

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  N  +D   +  D A+R+        L   KL+        +P +    R P    +L
Sbjct: 135 LSSNTLVDFGQEEVDIALRMGTG-DYPGLYVEKLLDDVFFPVCSPGF-NGGRLPEKPSDL 192

Query: 187 DKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
              NL+   GD      E     A +D P  EPR   +  +S L ++Q    G GIAL+ 
Sbjct: 193 AGLNLLRGEGDPWKPWFE----AAGLDWP--EPRKGLMLEDSSL-LLQAAAEGQGIALIR 245

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFIF 291
             +  ++     +VR+ +  IT  + +YF C P AL+   K++AFR ++ 
Sbjct: 246 SSLAYNDLLSGRVVRLFDVSITCPWLLYFVCAPGALE-LAKVQAFRGWLL 294


>gi|182678184|ref|YP_001832330.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634067|gb|ACB94841.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 313

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 134/286 (46%), Gaps = 9/286 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD ++ F  V R+G+ + AAEQ+ +  +++SR+I  LE  +G+ LF R   G  LT  G+
Sbjct: 23  WDDIKAFLAVLRTGTLSGAAEQMGVGLATLSRRIERLEDALGLPLFVRQHSGYQLTVDGA 82

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L +    +     + +   +E  ++  G +R+AT  +L   L+   + + L  YPD+ I
Sbjct: 83  NLLQQAEAMEAAALSLRCGARE-QMEIVGTVRLATAENLATGLILPEIGKMLGAYPDLTI 141

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++ D   +++    AD A+R+ KP + +  +QR L T+    Y +  Y+   R    + 
Sbjct: 142 EIVTDIATVNLHRRDADLALRMVKPERGNVTLQR-LGTLGYGLYGSRDYVIQRRTVSDLS 200

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             D    + + +     +    W   ++R I + R   +   S  + +     G G+A+L
Sbjct: 201 SYDTDAFVGWCE-TQSHLPAAQW---IER-ILQGRAPVIATTSLATQISAAKAGLGLAVL 255

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++ +D   L  +  D+      +Y      L  T +++   +F+
Sbjct: 256 PHFLARD-AELTCVQGDLGIDQ-AIYLVIQSDLAQTPRIRIVADFL 299


>gi|170692175|ref|ZP_02883338.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142605|gb|EDT10770.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 309

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 110/255 (43%), Gaps = 14/255 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+  LR+F  + R  SF   A +L  + S++S  +  LE  +G KL  R +R ++ TE 
Sbjct: 7   IDFADLRLFLAIVRCRSFRLTAIELGQTPSAVSHAMRRLEDRLGAKLLNRTSRAVSPTEA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     + ++++ +     +       G LR+    D    L+   L EF  L PD+
Sbjct: 67  GLDLASRLEDGFNQIGSALESFEAPGTARLGSLRLNVFADAAHLLVAPALPEFARLCPDV 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA-PHYLKNCREPL 181
           Q+ +++DN+ IDI  +  D  IR    +    +I   L        AA P YLK    P 
Sbjct: 127 QLTVVVDNRPIDIVAEGYDAGIRYGHHV-PEDMIAVPLTGPQQWVMAASPAYLKKHGTPR 185

Query: 182 SIQELDKHNLIT--FGDLIPKCMEDFNWLATV---DRPIGEPRISCLQVNSYLSIMQYCV 236
            + EL  HN +    GD        + W  +V     PI  P    + +N   + +  C 
Sbjct: 186 HVSELADHNCLQLLLGD-----NSSYRWEVSVAGKKTPIRVP--GSITINDTATTISACK 238

Query: 237 LGSGIALLPDYIVKD 251
            G GIA L +  + D
Sbjct: 239 AGMGIAYLLEARIAD 253


>gi|170739640|ref|YP_001768295.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168193914|gb|ACA15861.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 296

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 125/297 (42%), Gaps = 16/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R+   VA + SF  AA  LH+S  +++R ++GLE  +G +LF R  R + LTE G 
Sbjct: 4   WQAMRIVVKVAETASFAEAARHLHMSPPAVTRAVAGLEEVIGARLFVRTTRSVKLTEAGG 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +   L   +     S   PSG L +  ++  GQ  +   + ++L  YP +  
Sbjct: 64  RYVEDCRRILADLAEAEAAAAGSYATPSGTLTVTASVLFGQMHVLPIVTDYLDAYPTMAA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +  ++ ++I  +  D AIR+   +  S     ++  +      +P Y +    P +  
Sbjct: 124 RTLFVDRLVNIVEEGVDVAIRIGH-LPDSGFTAIRVGAMRRVVCGSPAYFERHGVPATPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           +L  H +          +    W +   R   + R+   S LQ NS  + +   + G G+
Sbjct: 183 DLKDHRI---------AVSTGAWASPEWRFGRDERVTVHSALQSNSNEAPISAALSGWGL 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                Y V     +  L  ++ D   P   ++  +P   +   K++ F +F   + R
Sbjct: 234 TRALHYQVGPALRDGRLRIVLADYEEPPLPIHVLHPGGRRAPAKVRTFVDFAVARLR 290


>gi|83955224|ref|ZP_00963879.1| hypothetical protein NAS141_16279 [Sulfitobacter sp. NAS-14.1]
 gi|83840217|gb|EAP79391.1| hypothetical protein NAS141_16279 [Sulfitobacter sp. NAS-14.1]
          Length = 301

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LR+F + A   + + A   L L+ +  S +++ LE E+G++L  R  R ++L+ +
Sbjct: 1   MDTDNLRLFVMAADRLNISAAGRNLGLAPAVASARLAKLEQELGVELLRRTTRKVSLSLE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS       E+  + E  +  L      P G +R A      Q  +   L +F   +PD+
Sbjct: 61  GSDFLPYAREILAQAEAAKAVLGSHETSPKGTIRFAAPSSFAQRHIMPLLPQFHAAFPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L +   D      D A+R   P+  SSL  RKL        A+P YL+    P S
Sbjct: 121 TLELRLSDARFDAIEGSFDLALRA-APLTDSSLKGRKLADDTRVLCASPAYLEEHGVPQS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGI 241
             EL  H  + + DL P+   D         P+   ++ C   V+   +  +  + G+G+
Sbjct: 180 PAELRGHRFLAWVDLEPR---DLIGPEGETAPLDPAQMICRTIVDDGDAQREATLAGAGL 236

Query: 242 ALLPDYIVKD---NPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++   + V D   +  L+R++ E  +  S  ++  YP +   T K +   +F+ 
Sbjct: 237 SINSLWSVSDELRSGRLIRVLPEWKLNDSSVLWLMYPRSNVLTPKTRILIDFLI 290


>gi|296446879|ref|ZP_06888816.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
 gi|296255650|gb|EFH02740.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
          Length = 304

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 90/169 (53%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD LR   VV+R+G    AA QLH+ +++I+R+++ +E  +G +LF R    L LTE
Sbjct: 3   NLNWDDLRYIIVVSRTGRLAQAARQLHVDETTIARRVARVERALGSRLFERANGQLLLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++ R   ++   +   +        + +GK+R+ +   +   +L   L +F+  +P 
Sbjct: 63  MGQEVLRHAEQIEMSVCGIKSVATGLDDRAAGKVRLTSVALIMNRILMPALPQFVRAHPQ 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +Q+ L+ + +++D+     D A+R  +P Q   L+ R++  +    + A
Sbjct: 123 LQLHLVSEPRNLDLGNREIDIAVRFARPEQDYRLVARRICELPYGVFGA 171


>gi|77456922|ref|YP_346427.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77380925|gb|ABA72438.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 329

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 128/290 (44%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           S +WD L+ F  VAR+   + AA++L +  +++SR+IS LE+ +G  LF +    G  LT
Sbjct: 24  SLNWDDLKFFLEVARTRKASTAAKRLAVDYTTVSRRISSLESALGTLLFEKSRTSGFVLT 83

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 84  AEGQRLLSYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 143

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL      
Sbjct: 144 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLQLYATQEYLDKHPPI 202

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L KH  I++ D +    E   +LA V         S   +  +++  Q    G  
Sbjct: 203 RRPADLGKHQFISYVDDLAFSSE-LLYLANVLPGASAHLRSTSVIAQFVAAQQ----GRS 257

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +P L+ ++ + I  +   +    E L+   ++    ++I
Sbjct: 258 LAILPCFLAAQDPRLLPVLPEEIDITRQFWMYCREDLRKLKRITLLWDYI 307


>gi|293609049|ref|ZP_06691352.1| predicted protein [Acinetobacter sp. SH024]
 gi|292829622|gb|EFF87984.1| predicted protein [Acinetobacter sp. SH024]
          Length = 326

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 134/291 (46%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G  + 
Sbjct: 10  LKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDGKLIL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +QI   
Sbjct: 70  ERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHIAPILSKLMMLYPKLQIHFD 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+     D  IR+   I + ++I +KL +      AAP YL     P SI++L 
Sbjct: 130 TIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCAAPSYLLKHGVPDSIEDLQ 188

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H+ +T  +   +      W    A+ D  +  +PR      N+   I Q  + G GI  
Sbjct: 189 THDCLTISE---RDQSSVLWKFRHASEDVSVHIKPRFVS---NNGEIIHQLAIEGHGIIF 242

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
              + V D   L+      I P +     V+  YP  LK++ KL+    FI
Sbjct: 243 RSIWDVAD--ELITGQLQHILPEYWQDADVWAVYPSRLKSSSKLQTCILFI 291


>gi|156932482|ref|YP_001436398.1| hypothetical protein ESA_00261 [Cronobacter sakazakii ATCC BAA-894]
 gi|156530736|gb|ABU75562.1| hypothetical protein ESA_00261 [Cronobacter sakazakii ATCC BAA-894]
          Length = 293

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 138/290 (47%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A+S SF+ AA  L ++ +++S+ +  LE  +   LF R+   + LTE+G+ L 
Sbjct: 11  LPAFLAAAQSQSFSAAARLLGVTPAAVSKSVRQLEARLSRVLFQRNTHFVVLTEEGAALR 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + ++H L      L++ + +P G +R++     G+ LL   L  F   YP +++ L 
Sbjct: 71  EQVAPLWHALNQA---LEKPADEPQGLVRVSVIPGFGRYLLMPELPAFQQRYPQVRLDLA 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D + +++  +  D AI  R  +Q S ++ R++  + M   A+P YL     P   Q+L 
Sbjct: 128 MDPRRVNLIGERIDVAIGQRT-VQDSRIVTREIRPMRMMLAASPAYLAQFGTPQQPQDLL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246
            H  +   +  P   +  +WLA  D    E + + L ++++  ++    L   GI  L D
Sbjct: 187 HHRCLVHRN--PGNGKLQSWLA--DELAMEEQHAFL-ISTFPDVLVDAALAEMGIVSLAD 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +        LV +ME        ++  YP   +   +++AF +F+  K
Sbjct: 242 WYLAPLIATGRLVPLMEAHWPAPQPLWVKYPHH-RLAPRVRAFVDFLIEK 290


>gi|323492181|ref|ZP_08097339.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323313494|gb|EGA66600.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 295

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 6/152 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F   A   +FTHAAE L+++Q +ISRQI  LE+ +G+ LFYR ARGL LTE+G K 
Sbjct: 10  NLQAFLATAYYLNFTHAAESLNMTQGAISRQIQSLESVMGVTLFYRQARGLALTEEGDKF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +L+T+  E+ +S    + +++I     +   LL   L  F   YPD+ ++L
Sbjct: 70  VPFAEDIIRRLQTSIREVADS----ANRIKINAPSCITSWLL-TRLAHFQQQYPDVNVEL 124

Query: 127 ILDNK-DIDISMDYADCAIRLRKPIQSSSLIQ 157
               + ++  S D  D  IR  KPI+S +  Q
Sbjct: 125 TSTTEHNVVPSFDRFDLIIRYGKPIRSKAYEQ 156


>gi|307544050|ref|YP_003896529.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307216074|emb|CBV41344.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 298

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 122/291 (41%), Gaps = 11/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  V   G  T AA  L  S  S+SR ++ LE  +GI+L  R  R  T +E G  
Sbjct: 5   EDLEAFVGVVEQGGLTAAARWLDRSVQSVSRALATLEDNLGIELVERTTRRSTPSEAGLA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R       +++  ++E  +S + PSG LRI   +      L   + +F+  YP+I ++
Sbjct: 65  FYRRVKPALEEIKEARLEATDSRIAPSGLLRIGAPVLFAPVYLMPVIADFMRRYPEIDVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ++   +  D A+R+ + +  S L  R+L ++    + AP Y      P    +
Sbjct: 125 LKLSDRFVNFEEEELDLAVRIGE-LPDSDLKARRLGSLRRVVFGAPGYFARHGRPRHPDD 183

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I    D  P       W   ++ R    P     + ++  +I        G+  
Sbjct: 184 LQRHACILRTVDRHPN-----QWTFQINGRTRSVPVSGSFRADTMTAIYSAVTHELGLGF 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            P + ++   D   +  ++     P   V+  +P       K + F+ ++ 
Sbjct: 239 SPLWQIRHLVDAGQVELVLTSYELPPVPVHIVWPSGRSPLAKTRLFKEYLL 289


>gi|257095782|ref|YP_003169423.1| LysR family transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048306|gb|ACV37494.1| transcriptional regulator, LysR family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 299

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 15/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++V   V  +  F  AA +L+LS S+++R I+ LE ++G++L  R  R + +T+ G++  
Sbjct: 7   MKVLVAVVDANGFAGAARKLNLSPSAVTRAINELERQLGVRLLARSTRIVRVTDAGARYA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +      +  +   P G+L +   +  G   +   + E+LL YP++    +
Sbjct: 67  DDCRRILADVAEADESVGGTHRAPRGRLTLTAPVLFGAQFVTPIVTEYLLRYPEVSAVCL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ I++  +  D A+R+ + +  SSL    +  +     AAP YL+ C EP +  +L 
Sbjct: 127 FLDRVINMLDEGVDVAVRIGE-LADSSLQAVPVGRVRRVICAAPAYLQQCGEPRTPDDLF 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVLGSGIAL 243
            H +++   + P       W    +   G PR+  LQ      S  S +   + G G+  
Sbjct: 186 AHRIVSAAGVTPTP----EWRLIEN---GAPRVVKLQARMTTTSNDSAVAAALGGFGLTR 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L  Y V +   +  L  ++ D   P+  V+  + E    + +++AF +    + R
Sbjct: 239 LLSYQVAEHLRSGRLQAVLSDFELPALPVHVLHREGQHASQRVRAFLDLAVERLR 293


>gi|253988083|ref|YP_003039439.1| DNA-binding transcriptional activator GcvA [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779533|emb|CAQ82694.1| lysr family regulator of gcv operon [Photorhabdus asymbiotica]
          Length = 306

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 132/298 (44%), Gaps = 22/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S Q+  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQMKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++ +       L   L  F L YP I ++
Sbjct: 69  YYLDIKEIFTSINEATRKLQARSAK--GALTVSLSPSFAIQWLVPRLSGFNLAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   +++ D   D  D AI   R   P     L   +L   ++    +P  L       +
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRGNWP----GLRTDRLYAEYLLPVCSPSLLTGENPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
             +L +H L+             +W A + +   + +I+  Q    +    ++Q  V G 
Sbjct: 183 PADLARHTLL-------HDSSRRDWQAYIRQLDMQQQINVQQGPIFSHSAMVIQAAVHGQ 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +   D   LV    DV+      Y    ++    GK+ AFR ++  +A
Sbjct: 236 GVALANNVMAQTEIDAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWVLAQA 293


>gi|221200111|ref|ZP_03573154.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206736|ref|ZP_03579748.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221173391|gb|EEE05826.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180350|gb|EEE12754.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 325

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 3/190 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT++G    
Sbjct: 22  IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTDEGRLYL 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE      GK+R+++T D G+N L   L EF   +PD+   L 
Sbjct: 82  NCCRQALQALDDADAMLQEGRNVVGGKVRLSSTSDFGRNQLLDWLDEFTARHPDVTFSLT 141

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +L+ R+L        AAP +++    P +  +L 
Sbjct: 142 ASDSSSNLWQDEIDLAIRFAAP-PDGALVARRLAANRRVLCAAPSFVERYGTPAAPNDLA 200

Query: 188 KH--NLITFG 195
           +   N+IT  
Sbjct: 201 RFPCNVITIA 210


>gi|187929253|ref|YP_001899740.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187726143|gb|ACD27308.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 331

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+   +A +G+ + AA QL    ++ S  +  +ETE+G +LF R  R +  TE G +
Sbjct: 5   DDLRLLVRIADAGNLSAAARQLGWLPATASAALKRVETELGARLFERTTRSMRPTEAGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    L+     L +   + SG +RIA T DLG+++L+  L  F   +P ++I 
Sbjct: 65  YLGYARQALEALDEGAESLGQDRTELSGPIRIAATSDLGRHILRPWLDAFCDEHPGVRIT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++  D+  +  D A+R    +Q S+L++R L +       AP Y K    P    +
Sbjct: 125 LVLGDRLADLMREDLDFALRYGH-LQDSALVRRPLASHPRVIVGAPSYFKKHGRPAHPSD 183

Query: 186 LDKHNLI 192
           L  H  +
Sbjct: 184 LADHRCL 190


>gi|86356917|ref|YP_468809.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86281019|gb|ABC90082.1| transcriptional regulator protein, LysR family [Rhizobium etli CFN
           42]
          Length = 297

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 15/291 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + V   V   GS + A+  LH   +++SR++S LE  +G +L  R  R + LTE G  
Sbjct: 5   EAMTVLLTVVEQGSLSAASRHLHSPLATVSRKVSELEAHLGARLLQRTNRKVALTEAGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+  ++E  +         P G+L +   I  G+  +     +FL  YPDI ++
Sbjct: 65  YVEAAREILDRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVAVDFLKAYPDINLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCREPLS 182
           L+L ++  ++  D+ D A+R+   +   +LI  +L  I    YA+P YL      R P  
Sbjct: 125 LMLGDRLANLVEDHIDLALRIGN-LADINLIATRLGLIRRTVYASPDYLALHAAIRHP-- 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L  H+ ITF  +        +W      R +  P  S L VN+  + +   V G GI
Sbjct: 182 -SDLSAHDCITFEGM----ASTRSWTFVEGKRELVVPIRSRLAVNTAEAAVDATVAGLGI 236

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +  Y          LV ++ D       V+  YP       K++A  +F
Sbjct: 237 TRVLSYQAAGAEKAGLLVPLLADFEQQPAPVHLVYPSQGLVPLKMRALIDF 287


>gi|294676371|ref|YP_003576986.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294475191|gb|ADE84579.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB
           1003]
          Length = 302

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 5/288 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++LR F   A++GSFT AA+QL +S    S+ ++ LE  +G++L  R  R + LT  G+ 
Sbjct: 5   EELRAFVATAQTGSFTAAADQLGVSNRLTSKYVAELEARLGVRLLQRTTRRVGLTPAGAD 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   L+     + E S   SG +R++  + LG+  + G L  F   +P +   
Sbjct: 65  LLARAPALLDDLDDLLAGVSEGSRGFSGVIRLSAPVTLGEIYVGGMLARFAAAHPGLSFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A R+ +  +  SL  R+L        A+P YL     P   ++
Sbjct: 125 LRLSDRFVDLAREGIDLAFRIGRS-EMLSLKARRLGESRTVVVASPAYLAAHGTPAEPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ I   +        F+  +       E  +     VNS  +  +  + G GIA  
Sbjct: 184 LARHDCIVDTNRQQPRRWQFHPGSAQAGAAQEVTVQGRFHVNSARAAAELAIAGLGIAHA 243

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P + V    D   LV ++    +P   V   Y E      KL+A  +F
Sbjct: 244 PRFAVCGALDTGALVPVLSGFHSPPSPVSAVYLEGRVLPRKLRALIDF 291


>gi|170698461|ref|ZP_02889533.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136632|gb|EDT04888.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 302

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 131/277 (47%), Gaps = 18/277 (6%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 87  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R  +P   + ++ R+L        AAP YL     P +  EL +HN I     I +  E 
Sbjct: 147 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGTPGTPHELTRHNCIG----IRQGDEG 201

Query: 205 FN-WLATVDRPIGEPR-ISCLQVNSYLSI------MQYCVLGSGIALLPDYIVKD---NP 253
           +  W  T  R  G  R    +++N  L+       +++ + G GI +  ++ ++D   + 
Sbjct: 202 YGIWRLTGGR--GAARNTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADG 259

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LV ++ D  TP+  +Y  Y +  + + +++AF +++
Sbjct: 260 RLVVVLPDYETPAADIYAVYAQRHQMSARIRAFVDYL 296


>gi|307321810|ref|ZP_07601197.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306892551|gb|EFN23350.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 301

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 141/294 (47%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++++F  +    SF  AA  L L++S+ +  I  LE +VG++L  R  R +  T  G+ 
Sbjct: 9   DRMQLFIRIVERRSFAAAASDLGLARSTATEAIKQLEHDVGVRLLERTTRHVAPTLDGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  +++  +   ++  ++P G LR+     L +  L   L EFL  YP + +Q
Sbjct: 69  FYQRCIAILAEVDEAENAFRD--MQPRGLLRVDAHPLLTRTFLLPRLTEFLDRYPLLDLQ 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC IR  + I  S LI R+L  I     A+P Y++    P S   
Sbjct: 127 IAQGDRLVDLVREGIDCVIRAGE-IADSGLIMRRLGMITEITCASPAYIERHGIPHSPDA 185

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           +D H  + F     G ++P    +F   ++V R +  P   C L VN+  ++    + G 
Sbjct: 186 MDGHRAVGFISSRTGQIMPL---EFTMGSSV-RYVTLP---CRLTVNNSDTMNDLALRGF 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+   P Y ++   D   LV ++ +   P   +   YP+  + + +++ F +++
Sbjct: 239 GLIQAPRYRLQRDLDEGGLVEVLAEFPPPPTPLSALYPQNRQLSPRVRVFLDWV 292


>gi|170693127|ref|ZP_02884288.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142125|gb|EDT10292.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 307

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 1/182 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F + A   SF+ AA +L L+ +++S+ ++ LET +G++LF R  R LTLT +G KL R  
Sbjct: 10  FVLSAEHLSFSAAARRLGLTPAAVSKNVARLETSLGLRLFQRSTRKLTLTTEGEKLLREV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           +  +  L+           +P+G L+++  +  G+  L   L EFL  YP I      DN
Sbjct: 70  AAPFTALQDAFAGAAVQDGRPAGTLKVSLGLAFGREYLVPLLGEFLEHYPAIVPDWHFDN 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  D  D AI     + +  ++ R+L   H+   A+P Y+     P    EL   +
Sbjct: 130 RPVDLIADGFDVAIGGGIEL-TPGIVARELARTHVIVAASPAYMATRTMPRHPSELSAFD 188

Query: 191 LI 192
            I
Sbjct: 189 GI 190


>gi|168260116|ref|ZP_02682089.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205350884|gb|EDZ37515.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 301

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 96/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVSRPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITF 194
           L KH+ + +
Sbjct: 185 LQKHHAVGY 193


>gi|84386507|ref|ZP_00989534.1| Putative transcriptional regulator, LysR family [Vibrio splendidus
           12B01]
 gi|84378612|gb|EAP95468.1| Putative transcriptional regulator, LysR family [Vibrio splendidus
           12B01]
          Length = 293

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 138/292 (47%), Gaps = 17/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  +G F+ AAE L +  + +SR +S +E+++G+ +F R  R + LTE+G +
Sbjct: 6   DDLEMVLTVVDAGGFSAAAEALDVQVAKVSRSVSKVESQLGVSIFNRTTRRVELTEEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      +++ + E+      P G+LR+        + L   ++ F   YPDI+++
Sbjct: 66  FVDSVRVGLQMIQSAEEEIVSRGELPKGRLRVDAASPFVFHQLVPLVQSFKEAYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    +H  A+P YL     P   ++
Sbjct: 126 LTSNEGFVDLLEKRTDIAIRIGK-LSDSTLHARPLGKSLLHIVASPDYLAKRGLPTKPED 184

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H ++ F G+ +       N     ++    P ++    ++  ++ Q  + G+GIA L
Sbjct: 185 LSSHQIVGFAGNKV------LNHWPLPNQSDVAPTVTA---SNGETVRQLVLAGNGIACL 235

Query: 245 PDYIVKDN---PNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++V+++     L+ I+E      T    V   Y ++   + ++ AF +FI
Sbjct: 236 SGFMVQEDMAAGRLIPILEQDKLANTDRERVNAVYYKSSSVSKRISAFIDFI 287


>gi|110634823|ref|YP_675031.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285807|gb|ABG63866.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 303

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 122/287 (42%), Gaps = 14/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V R+GS   AA +L L+Q ++SR +  LE ++G +LF RH R L +TE      
Sbjct: 14  LSAFEAVLRTGSTAAAARELDLTQGAVSRLLQNLEEQLGQQLFIRHRRRLIVTEAARSYG 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           R  +     ++   IEL   +  P G  L +A     G   L   L  FL  +P I I L
Sbjct: 74  RDITRALDLIQRASIEL---TTNPGGGVLSLAILPAFGTRWLAPRLGSFLGAHPGITINL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               K  + S +  D AI         +    KL    + A AAP  L     P+   E 
Sbjct: 131 ATRLKRFNFSAEGFDAAIHFGSDDWRDA-EHMKLFEEQLTACAAPSLLAKV--PVETAE- 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D   L  F  +  +      W  T       P    L  + Y  + Q  V G G+ALLP+
Sbjct: 187 DLRRLQLF-QMESRRNAWSVWF-TAQGAEATPSRGML-FDQYAPMTQAAVAGLGVALLPE 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+ +    +  LV +++  +    + +  +PEA  +   L+AFR ++
Sbjct: 244 YLAEPEIADGRLVPLLKRAVRGDGSYWLVWPEARASYPPLEAFRTWL 290


>gi|21492922|ref|NP_659997.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|21467347|gb|AAM55010.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
 gi|327191683|gb|EGE58690.1| LysR family transcriptional regulator [Rhizobium etli CNPAF512]
          Length = 301

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 88/189 (46%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +AR+G F  AA    +S S++S  I GLE  +G++LF+R +R ++LT  G
Sbjct: 7   DLADLETFVAIARAGGFRKAAALRGVSGSALSHSIRGLEARLGVRLFHRTSRSISLTAAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       +  ++     L      P+G++R+ T  D  + L+   L  F   YPD++
Sbjct: 67  EVLLAELEPRFLGIQAAMDLLDSFRSGPTGRVRVTTLRDAAELLIAPRLHSFRKSYPDVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ ++++ ID+  +  D  IR    +    +  R    +      +P YL     P   
Sbjct: 127 VEVSVEDRFIDMVAEGFDAGIRYGGTVPEGMIASRLTSELEWIVVGSPAYLNERGRPARP 186

Query: 184 QELDKHNLI 192
           ++L  H  I
Sbjct: 187 EDLLTHECI 195


>gi|86360743|ref|YP_472630.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284845|gb|ABC93903.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 303

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 4/187 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F    R  +F  AAE+L ++Q ++++Q+  LE ++G++LF R ARGL LT  G+ 
Sbjct: 12  NALRAFEASGRKLNFRGAAEELGVTQGAVAQQVRALEDQLGLRLFQRLARGLALTAYGTA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +  +  L      L +   +P   + I+ T  +   LL   L E     PDI ++
Sbjct: 72  YLADVTRAFDTLAEATGRLLD---RPE-MVTISATPTVATRLLIPRLAELYAALPDIDLR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +      D   D  D A+RL +P   ++L  + L    + A A+PH ++    PL+I+E
Sbjct: 128 TVATEALADFDRDQVDIAVRLTRPPFPANLQAQMLFRQELVAVASPHLVQGLTLPLTIEE 187

Query: 186 LDKHNLI 192
           L K  L+
Sbjct: 188 LRKLPLL 194


>gi|89897759|ref|YP_521246.1| hypothetical protein DSY5013 [Desulfitobacterium hafniense Y51]
 gi|89337207|dbj|BAE86802.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 295

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 143/297 (48%), Gaps = 19/297 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  R+F  V+R+ SF+ AA++L+++QS++S+ I+ LE+E+ ++LFYR +RG+ LT +G  
Sbjct: 6   DLYRIFNAVSRNKSFSKAAQELYMTQSAVSQAIAKLESELEVQLFYRTSRGVLLTNEGKL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   +     +   + ++ E     +G+LRI     + +  L   L+EF   Y  I++ 
Sbjct: 66  LNEHVNSALGMIHAAEDKILEFKELKAGQLRIGVGDTITRYFLLPYLEEFHSAYHSIKLN 125

Query: 126 LILDNKDIDISMDY-----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IL+    +I  D+     AD  I    PIQ  SL       IH        Y     +P
Sbjct: 126 -ILNGTTTEIQ-DFIKSGKADVGI-CNLPIQDESLYVIPCREIHDIFVGGEKYKDMTVKP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  ++L +  LI     + +     N++ +  +  G P     ++ SY  ++++  +  G
Sbjct: 183 IPFKQLMELPLI----FLEEKSNSRNYVESFLKKEGFPLSPVFELGSYDLMLEFAKINLG 238

Query: 241 IALL-----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA +      DY+   +   +++ ED+  P  ++  CY +++  T   K F   I L
Sbjct: 239 IACVIKEFSEDYLANGSLYELKLEEDI--PKRSIGLCYLKSVPLTPAAKKFVESIIL 293


>gi|268592447|ref|ZP_06126668.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291312237|gb|EFE52690.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 301

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 131/284 (46%), Gaps = 18/284 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  F  V   G F+ A   L + +S +SR+I+ LE ++ + L YR  R   +T
Sbjct: 1   MQYDLNDLYYFVKVVEYGGFSQAGLALGIPKSKLSRRIADLEKKLNVSLIYRSTRQFHVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++    V  + E     +      P G ++++  + L Q  L   L +F++ YP
Sbjct: 61  EVGQVFYQQCKNVVDEAEVAHELICSVQSHPKGTIKLSCPVALLQVYLNELLVDFMMKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI IQ++  N+ +D+  +  D AIR+R  P+  S L+ + L        A+P       E
Sbjct: 121 DIDIQILAVNRPVDVISEGLDLAIRVRSLPLDDSGLMMKVLGYSRRILVASPQLFAEQGE 180

Query: 180 PLSIQELDKHNLITFGD------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
            +  ++L  + ++   +      L  K  +D ++          P+++   +   L++ +
Sbjct: 181 LIEPEKLVDYPMLANTEHSQNYTLTLKNSDDLSFTQHF-----TPKLATTDI---LTLYR 232

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
             + G GIA LP  +V+   ++ NL+ ++     P   ++  YP
Sbjct: 233 AALKGVGIARLPYGVVEKDIESGNLIEVLPQWQFPEDIIHAVYP 276


>gi|187919781|ref|YP_001888812.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718219|gb|ACD19442.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 306

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 127/286 (44%), Gaps = 6/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V  +GS T AA +L L+++ +S  +  LE EVG  L  R  R L LTE G  
Sbjct: 10  NRLAIFVAVVEAGSLTAAAARLGLAKTMVSTHMQRLEAEVGASLLVRTTRRLGLTEPGRA 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  + ++    E     +   +    G LR+++ ID G   +   L E    +P + ++
Sbjct: 70  FYEASVKILRATEDALAAIGGETAPVRGTLRVSSPIDYGSLAVAPVLVELRRTHPQLNVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+  ++ +D+  D  D AIRL + +  S+    KL +      A+P +++   +P +  E
Sbjct: 130 LLCTDRYVDLIADGIDVAIRLGR-LADSNFRAVKLGSFVKWIVASPDFVETWGQPQTPAE 188

Query: 186 LDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L          L  P  ++      T D  +   R  + L VN+  +     + G G  L
Sbjct: 189 LSAMPFCALTVLPRPLTLDLQRNGGTGDGDVESVRCENALLVNTADACRAATLAGGGFGL 248

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L D+ +  +     L+R++ +  T   ++   +P       K++A 
Sbjct: 249 LTDFSIGGDIAAGRLIRLLPEWATEPASIQAIFPPTSHPPRKVRAL 294


>gi|168230103|ref|ZP_02655161.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470746|ref|ZP_03076730.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|238911938|ref|ZP_04655775.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|194457110|gb|EDX45949.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335448|gb|EDZ22212.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 301

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 96/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLRIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYSSPENLDD 184

Query: 186 LDKHNLITF 194
           L KH+ + +
Sbjct: 185 LQKHHAVGY 193


>gi|218461805|ref|ZP_03501896.1| transcriptional regulator protein, LysR family [Rhizobium etli Kim
           5]
          Length = 220

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 1/192 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + V   V   GS + A+  L    +++SR++S LE  +G KL  R  R +TLTE G  
Sbjct: 5   DAMSVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLGAKLLQRSNRKITLTEAGRS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+  ++E  +         P G+L +   I  G+  +   + +FL  Y +I ++
Sbjct: 65  YVEAAREILDRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYAEINLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YL     P    +
Sbjct: 125 LMLGDRLSNLVEDHIDLALRI-GTLADSNLIATRLGAIRRTVYASPDYLARHLAPRQPGD 183

Query: 186 LDKHNLITFGDL 197
           L  H+ ITF ++
Sbjct: 184 LSAHDCITFENM 195


>gi|170751071|ref|YP_001757331.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657593|gb|ACB26648.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 296

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 125/297 (42%), Gaps = 16/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R+F  VA + SF   A  +H+S  +++R ++ LE  +G +LF R  R + LTE G 
Sbjct: 4   WQAMRIFAKVAETASFAETARLMHMSPPAVTRAVAALEETIGARLFVRTTRSVKLTEAGG 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +   +   +     S   PSG L +  ++  G   +   + ++L  YP +  
Sbjct: 64  RYYEDCRRILADIVEAEAAAAGSYATPSGTLAVTASVLFGHMHVLPIVTDYLDAYPTMAA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +  ++ ++I  +  D A+R+   +  S     ++ ++      +P Y +    P + Q
Sbjct: 124 RTLFVDRQVNIVEEGIDVAVRIGH-LSDSGFTAARVGSVRRVVCGSPAYFERHGVPQTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGI 241
           +L  H +          M    W +T  R   + R++    L  N+  + +   + G G+
Sbjct: 183 DLRDHRV---------AMSTGAWASTEWRFAQDQRVTVHPALMSNTNEAGIAAALAGWGL 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y +        L  ++ D       ++  YPE  +   K++ F +    + R
Sbjct: 234 TRVLHYQIGSALLEGRLQVVLADYEEEPLPIHVVYPEGRQAPAKVRTFVDLAVARLR 290


>gi|146306190|ref|YP_001186655.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574391|gb|ABP83923.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 312

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 21/290 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + + L+ F  VA +G  + AA  L +S+S +SR++  LE ++GI+L  R  RG  LTE
Sbjct: 5   GLNLEDLQTFVEVADAGGISAAARHLGVSKSIVSRRLFRLEADLGIQLLARTTRGAALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLL 117
            G     +T   +    + +IE    ++ P+    G+LR+A  +  G       L E   
Sbjct: 65  AG-----MTFREHAARASAEIETARETILPTGDLRGRLRVAVPLSSGPIHFAPVLAEMAR 119

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP +QI     ++ +D+  +  DCAIR+   ++ S+L+ +++  I+    A+P Y+K  
Sbjct: 120 RYPRLQIDAAYGDRFVDLVAEGFDCAIRV-GALRDSNLLAKRVGQIYGKLVASPDYIKAH 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P +  E+  H  +  G    + M D N + TV +P G       + ++  ++      
Sbjct: 179 GAPETPDEIAAHQAL-LGAESWRFM-DGNKVITV-QPQGR-----FKSDNGAALAGAAAA 230

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G GIA LPD +  +   +  LV IM     P   VY   P +     K++
Sbjct: 231 GLGIAWLPDCVTYEYLASGALVPIMTRYPLPVGDVYIVRPPSAHPAQKVR 280


>gi|59711928|ref|YP_204704.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59480029|gb|AAW85816.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 303

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 130/289 (44%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  SFT AA+ L +S++ +S+QI  LE  +G++L  R  R  +LTE G   
Sbjct: 7   QMIVFNALTQQQSFTKAAQLLDISRTQVSQQIQLLEERLGVQLVQRTTRSFSLTEAGQTF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +  ++   + EL  +     GKLR+        N +   L E    YP + I++
Sbjct: 67  AVHCANIADEINEAENELLTNIDNLQGKLRVGIAQSFATNHILPYLSELHHAYPQLNIEI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  ID+  +  D  I +         + R L+  H    A+P YL     P    +L
Sbjct: 127 TLFDHKIDVIAEQLDLWIGVMDS-PPEGFVARHLIDCHFVLVASPLYLAKQGIPYHPYDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            KHN +T+   I +  +D  W    +    + ++S   +++S  +I    + G+GI  + 
Sbjct: 186 KKHNCLTY---ISRERKDDVWGFHKEDENLQIKVSGNYRIDSADAIRNATIAGNGIGYIA 242

Query: 246 DYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y++ D      LV+++ D  +  S  +Y  YP       K+  F  F+
Sbjct: 243 TYLLSDELQAGKLVQLLPDWELNQSMPLYAVYPRRKFLPKKVHVFMEFV 291


>gi|78060579|ref|YP_367154.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965129|gb|ABB06510.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 290

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 137/289 (47%), Gaps = 15/289 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  VA++GS + AA +L++  +++SR+++ LE+E+ +++  R  R    T  
Sbjct: 2   FDWENLRYFVAVAQAGSLSAAARRLNVDHATVSRRLAALESELKMRVIDRLPRACRPTAA 61

Query: 63  GSKLHRVTSEV-YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G ++     ++  H     ++ L E  +   G + I+    L  N    +L  F  L+P 
Sbjct: 62  GRQILEFAGKMEEHAFAIERLALTE-HLPMHGTVTISVPPVLANNFFANHLYAFAQLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +    + + ++   AD A+RL +P +  + + RKL  +    YA+  Y  +   P 
Sbjct: 121 IRLSMASQAQSVSLARREADIAVRLFRPEEPQN-VTRKLGEMAFGLYASRDY-AHASTP- 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                D    I +     + M    WL ++ R  G  RI+C +V+   +       G G+
Sbjct: 178 -----DDWAFICYDAQFAE-MPHQKWLESIAR--GR-RIAC-EVSDITTQQVAARTGIGV 227

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP ++   +P L R+  D    +  ++      L+++  ++A  +FI
Sbjct: 228 AGLPVFMGDGDPGLQRLPFDGEPYARDIWLVVHADLRHSPSIRAAIDFI 276


>gi|109897994|ref|YP_661249.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109700275|gb|ABG40195.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 302

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 140/299 (46%), Gaps = 18/299 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSFT+AA   ++  SS+SR+++ LE  +G  L  R  R + LTE G   +
Sbjct: 7   IRYFCKVVETGSFTNAATTFNVPPSSLSRRVADLERSLGATLLKRSTRVVRLTEIGRTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++  +LE +   ++     P+G+LRI+  ++ G+ +L   L+EF   YP I + + 
Sbjct: 67  NQVNDILRQLELSNDTVRSYQTVPTGQLRISAMVEFGEPILFPLLEEFSQRYPQIILDVR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++   +S D  D AIR      +  +I  KL+     A A   YL+    P +  +L 
Sbjct: 127 LSDELSALSRDEVDIAIR-GGYAPNERVIAIKLMENQFIAVATKAYLERYGTPNTPLDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H  + +    P       W++ ++   + +  P+++      +L  +   + G G+ + 
Sbjct: 186 HHKGLYY--RTPNG--PLRWISEINGQWQDVSAPQVAVSNNGKWL--LGKVLAGQGMMMA 239

Query: 245 PDYIVKDNPNLVRIMEDVITPS--------FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P +++K+      + E  ++P         F +Y  Y +      K+KA  +F+  + +
Sbjct: 240 PKWLLKEYLVSGDLQELSLSPEINITSSSDFGIYLLYQKQRYLVPKVKAAVDFLVARIK 298


>gi|115360182|ref|YP_777320.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285470|gb|ABI90986.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 306

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 131/277 (47%), Gaps = 18/277 (6%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 31  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 90

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 91  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 150

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R  +P   + ++ R+L        AAP YL     P +  EL +HN I     I +  E 
Sbjct: 151 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGTPGTPHELTRHNCIG----IRQGDEG 205

Query: 205 FN-WLATVDRPIGEPR-ISCLQVNSYLSI------MQYCVLGSGIALLPDYIVKD---NP 253
           +  W  T  R  G  R    +++N  L+       +++ + G GI +  ++ ++D   + 
Sbjct: 206 YGIWRLTGGR--GAARNTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADG 263

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LV ++ D  TP+  +Y  Y +  + + +++AF +++
Sbjct: 264 RLVVVLPDYETPAADIYAVYAQRHQMSARIRAFVDYL 300


>gi|22125027|ref|NP_668450.1| transcriptional regulator LYSR-type [Yersinia pestis KIM 10]
 gi|45440992|ref|NP_992531.1| LysR family transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808545|ref|YP_652461.1| LysR family transcriptional regulator [Yersinia pestis Antiqua]
 gi|108811198|ref|YP_646965.1| LysR family transcriptional regulator [Yersinia pestis Nepal516]
 gi|145599959|ref|YP_001164035.1| LysR family transcriptional regulator [Yersinia pestis Pestoides F]
 gi|149365274|ref|ZP_01887309.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|153947011|ref|YP_001401960.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|162420915|ref|YP_001606384.1| LysR family substrate-binding transcriptional regulator [Yersinia
           pestis Angola]
 gi|165925201|ref|ZP_02221033.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165937114|ref|ZP_02225679.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166008126|ref|ZP_02229024.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166214573|ref|ZP_02240608.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167399008|ref|ZP_02304532.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167422574|ref|ZP_02314327.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423302|ref|ZP_02315055.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170025296|ref|YP_001721801.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|218929873|ref|YP_002347748.1| putative LysR family transcriptional regulator [Yersinia pestis
           CO92]
 gi|229838381|ref|ZP_04458540.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229895885|ref|ZP_04511055.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Pestoides A]
 gi|229898947|ref|ZP_04514091.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229901430|ref|ZP_04516552.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|270489618|ref|ZP_06206692.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294504618|ref|YP_003568680.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|21957875|gb|AAM84701.1|AE013715_3 putative transcriptional regulator LYSR-type [Yersinia pestis KIM
           10]
 gi|45435851|gb|AAS61408.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108774846|gb|ABG17365.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|108780458|gb|ABG14516.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Antiqua]
 gi|115348484|emb|CAL21421.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis CO92]
 gi|145211655|gb|ABP41062.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149291687|gb|EDM41761.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|152958506|gb|ABS45967.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353730|gb|ABX87678.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis Angola]
 gi|165914977|gb|EDR33589.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165922808|gb|EDR39959.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165992508|gb|EDR44809.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204247|gb|EDR48727.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166958588|gb|EDR55609.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051512|gb|EDR62920.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057472|gb|EDR67218.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169751830|gb|ACA69348.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
 gi|229681359|gb|EEO77453.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|229687892|gb|EEO79964.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229694747|gb|EEO84794.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229700808|gb|EEO88837.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Pestoides A]
 gi|262362677|gb|ACY59398.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis D106004]
 gi|262366604|gb|ACY63161.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis D182038]
 gi|270338122|gb|EFA48899.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294355077|gb|ADE65418.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|320016245|gb|ADV99816.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 297

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 128/274 (46%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L+ F VVAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNELQSFLVVARERSFTKAAGKLGVSQSALSHAIKGLEERLNLRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++          LE     L + +   SG +R++      ++LL   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRLADLEQELETLLQLNGTVSGNIRLSAGEHAARSLLWPKLKPFLRKYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  ++I     D  +RL + +    +  +    + M    +P Y      P++ 
Sbjct: 125 VELVVDNGFVNIVDGRFDAGVRLGESVDKDMIAVKIGPEMRMAVVGSPEYFMANAIPVTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L +N     +     G G+A
Sbjct: 185 HELQHHRCINM--RLPTAGGLYHWEFEKEGKPLRVKVEGQLTLNILPERIDAAQSGFGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+  ++    +  L++++E    PSF  Y+ Y
Sbjct: 243 CVPEDSIQAFLRSGKLIQVLE-AWCPSFPGYYLY 275


>gi|238754821|ref|ZP_04616172.1| Glycine cleavage system transcriptional activator [Yersinia ruckeri
           ATCC 29473]
 gi|238706981|gb|EEP99347.1| Glycine cleavage system transcriptional activator [Yersinia ruckeri
           ATCC 29473]
          Length = 293

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 130/292 (44%), Gaps = 19/292 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G   +  
Sbjct: 1   MFDAAARQLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQSYYLD 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E++  +     +LQ  S K  G L ++         L   L  F   YP I +++   
Sbjct: 61  IKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSSFNSAYPGIDVRIQAV 118

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QELDK 188
           +++ D   D  D AI   +    + L   +L    +    AP  L     PL +  +L  
Sbjct: 119 DREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPGLLMG-EHPLKVPTDLAY 176

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIALLP 245
           H L+             +WLA   R +G P+I+  Q    +    ++Q  V G GIAL+ 
Sbjct: 177 HTLL-------HDTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIALVN 228

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 229 NVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 280


>gi|169244307|gb|ACA50465.1| LysR family regulatory protein [Pseudomonas fluorescens]
          Length = 310

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 143/289 (49%), Gaps = 17/289 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA++GSF  AAEQL +++S I+ ++  LET +   LF+R  R + L++ G    + 
Sbjct: 9   AFVRVAQTGSFAKAAEQLGVTRSVITHRVQQLETFINSPLFHRSTRHVRLSDIGEAYFQE 68

Query: 70  TSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +++   +H L T ++  Q S++  +G+LR+        + L   L +F  L+P+I+  +
Sbjct: 69  CADMVAGFHGL-TEKMRHQRSNL--TGQLRVQVLQGFAVDHLGPMLAKFTALHPEIEFDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +++++ +D   +  D A ++  P+ +  L+ RKL ++H    A+P YL+    P   Q L
Sbjct: 126 VVNDRVVDPIEEGFDIAFQMFPPL-AERLVVRKLFSVHRVFCASPQYLEERGAPEHPQHL 184

Query: 187 DKHNLITFGDLIPKCMEDF-NWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             H++  FG    +    F      +D  + G+ R S + +     +  Y + G+GI  L
Sbjct: 185 KDHHMALFGGYPSRNRWQFVRGEECIDLTLHGQVRSSSIHL-----LRDYALSGAGITCL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +  +      LV I+ D    SF     YPE  +   +++   +F+
Sbjct: 240 PTLVASNELITGRLVPILTDYRLSSFDFAAVYPETQRRALRVRTLIDFL 288


>gi|221065706|ref|ZP_03541811.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710729|gb|EED66097.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 317

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 142/313 (45%), Gaps = 25/313 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V    SF  AA QL L+ S++SR +  LE   G++L +R  R L+LTE G+++
Sbjct: 10  EMLVFAKVVELRSFAAAARQLDLTTSAVSRSVGRLEAHWGVQLLHRTTRSLSLTELGAEV 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   S++              S  P G +R+      G+  L   L      +P+++I +
Sbjct: 70  YAACSQLAQTASDIHAIAGHYSGVPRGTVRLTAPTIFGEIWLSAQLPALRRQWPELEIAV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ- 184
            L ++  D++    D AIRL +P Q    ++ R+L  +   A A+P YL+   +P     
Sbjct: 130 SLSDQMQDLAQQGLDLAIRLTRPEQLPPHMVARELRQVRYIAVASPAYLQGLPKPPGHPL 189

Query: 185 ELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQ 233
           EL + + +      +GD          WL   DR    P ++ + V++ LS      I+ 
Sbjct: 190 ELGRQHGVACITLGYGDF----QSRLQWLHGQDRSPA-PAVTEVAVHAPLSMDSSTGIIN 244

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMED-VITPSF---TVYFCYPEALKNTGKLKAF 286
             +   GI L+ D+  +    +  L++++ D  +T ++   T Y  Y  +     K++A 
Sbjct: 245 LALQHQGIGLVADFAAQAVLHSGALIQVLPDWQLTGNYAPRTAYALYMPSRHLPLKVRAL 304

Query: 287 RNFIFLKARDWKF 299
            + +    R  +F
Sbjct: 305 IDHLVEAGRRQRF 317


>gi|26987899|ref|NP_743324.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24982607|gb|AAN66788.1|AE016308_1 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 298

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 129/298 (43%), Gaps = 13/298 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V    SF  AA +L +S ++++R +S LE ++G+KL  R  R + LTE G +  
Sbjct: 7   MKVFVAVGELESFAAAARRLDISPAAVTRAVSALEEQLGVKLLLRTTRSVRLTEAGGRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +   +          +  P G L +   I  G+  +   +  +L  YP++ +   
Sbjct: 67  EDTRHILASIHEANEAAAGINATPRGDLAVTAPILFGKKFVMPCIVRYLQQYPEVDVSAF 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D A+R+  P+  S L   ++  +     A+P YL     P    +L 
Sbjct: 127 FLDRVVNMVEEGMDVAVRI-GPLPDSGLKALRVGRVRRMLCASPDYLARHGVPKHPSDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H +I   +L P+    F      D P     +PR   L V S    +     G GIA L
Sbjct: 186 GHAIIGTTNLSPRAGWRFG---VTDEPTLVRMKPR---LTVTSNDGAIAAASGGLGIARL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             Y V D   +  L  ++ +     + ++  + E+   + K++AF + +    RD + 
Sbjct: 240 LSYQVADELASGQLQVLLAEYEEAPWPIHVLHRESKYGSAKVRAFIDMLAQGLRDQQL 297


>gi|169786915|ref|YP_001708727.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|169147076|emb|CAM84730.1| putative HTH-type transcriptional regulator (LysR family)
           [Acinetobacter baumannii AYE]
          Length = 320

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 130/289 (44%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T  G +L 
Sbjct: 29  MRIFCVAAESRNFKEAATQLGISPQVVTRAIKELEEQRGEILFYRSTRQIKITADGERLA 88

Query: 68  RVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   YPDI +  
Sbjct: 89  KQARFAVGSIDALLVKDTKEKRDEMRGTVRLTVSSVLGRKLVIPALAEFATRYPDIVVDC 148

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +   D+  +  D  IR    +  +  + ++L  ++ ++   P  +     P  I +L
Sbjct: 149 VLTDSHSDVIDERIDIGIRF-GFLPDNRYVAKELAKVNFYSVGTPELIDKVGMPKKIIDL 207

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           DK+ L    D   K    + W  T  R     +PR     + +     Q  + G G   +
Sbjct: 208 DKYPLTALVD--HKTGRYWPWTFTESRSFTPSKPRFITDDLEAEF---QAILAGVGFGHM 262

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V     +  L++I+ +  +P + +Y   P+      +++A  +++
Sbjct: 263 PGFLVLPWLRSGKLIQILHEENSPVWRLYLYRPQRGPTPLRIRALFDYL 311


>gi|146340660|ref|YP_001205708.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146193466|emb|CAL77482.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 303

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 113/241 (46%), Gaps = 6/241 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSFT  A++L+ +Q +ISRQI  LE  +  +LF R  R LTLT+ G   +
Sbjct: 7   MRTFVRVVEAGSFTAVADELNTTQPTISRQIGALEEHLRTRLFTRTTRALTLTDDGRVFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    +   +  +     KPSG LR+A  +  G+  +   L  FL  YPD+ I LI
Sbjct: 67  EHALRALEAVSEAEGAVGRRRQKPSGLLRLAAPVVFGRLHVVPRLPAFLKRYPDVSIDLI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+     D AIR+   I    LI R++ T+     A+P YLK  R P    +L 
Sbjct: 127 MSDGFADLVEQGIDVAIRVGD-ITDPGLIARRIGTVQRVTVASPAYLKAHRAPKVPADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  I +     +      WL  + D P+        + ++  ++    + G GIA++P 
Sbjct: 186 LHQCIVYS----RLATGNRWLFESKDGPVAVEVSGRYRADNSEAVRDGVLGGLGIAVIPT 241

Query: 247 Y 247
           +
Sbjct: 242 F 242


>gi|262173829|ref|ZP_06041506.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|261891187|gb|EEY37174.1| transcriptional regulator [Vibrio mimicus MB-451]
          Length = 310

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 15/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G  
Sbjct: 5   NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRNIRLTHEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T      L+    ++  +  + +G+L I+   DLG+NLL   ++EF+ L+P++ ++
Sbjct: 65  FLAKTQSAIATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIEEFIALHPNVTVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+  +  D AIR  KP  S+ +      +      A+P YL      L   +
Sbjct: 125 LELSDSLTDMYTNPVDIAIRYGKPADSNLVAILLCDSNERVLCASPDYLATHPPILHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + +  ++   + +  W+ + D   GE     +Q N   +    + +  V G GI
Sbjct: 185 LLHHNCLCY--MVSDTLHN-KWILSRD---GETHSVVVQGNPACNDGEVVHRLAVKGKGI 238

Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A   L D I +D  +  LVRI+ +  +    +Y    +    T  ++AF+ +I  K 
Sbjct: 239 ANKSLMD-ISQDIIDGRLVRILPEWESGPVPIYLVCADRRLITPTIRAFQEYIRGKG 294


>gi|172063535|ref|YP_001811186.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996052|gb|ACB66970.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 292

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 17/252 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD +R F  V R GS + AA  L +  S+++R+I  LE+ +GI+LF R  RG   T
Sbjct: 1   MPTSWDDIRYFLAVMRGGSLSAAARALQVQHSTVARRIDALESALGIRLFDRLPRGWPPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           ++G  LH        + +T              G +R++ +     + L   L      +
Sbjct: 61  DEG--LHLADHAARLEADTHAFARAAQGAAALDGVVRVSASPVFASHFLAPRLARAQRAW 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P ++I L+ +    ++    AD A+RL +P +   L  R+L T+     A+P +      
Sbjct: 119 PALRIDLMGEMHAANLYAREADLAVRLSRPSE-PGLAARRLGTMRFALCASPEW------ 171

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +    D    + + D + +  +   WL   DR     R      N   +  + C  G+
Sbjct: 172 --ADAPSDTWPFVGYDDALAQTPQQ-QWL---DR-FAAGRRFAFVANDLAAQHRACAAGA 224

Query: 240 GIALLPDYIVKD 251
           G+ALLP ++V D
Sbjct: 225 GVALLPRFLVDD 236


>gi|91225436|ref|ZP_01260558.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91189799|gb|EAS76072.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 301

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 130/292 (44%), Gaps = 23/292 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  VAR  S T A+E+L++  +++SR++  LET +  +LF R A    LT  G K
Sbjct: 7   DDLLLFVSVARYQSLTQASERLNVPLATLSRKLKRLETNLNCRLFNRSAHHFALTTDGEK 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +++   +   L      +       SG ++I+  I++ Q  L+  + EF   +P I I 
Sbjct: 67  YYQLCEPLLLSLNNVTSRIATERQSLSGTIKISAPINMTQMWLKRCVYEFAEQHPKICID 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + N+ I++  +  D + RL   I+   + Q KL +I     A+  YL+  +     ++
Sbjct: 127 LDVQNEKINLVSNRVDVSFRLGDLIEQDWIAQ-KLWSIPFALCASRSYLEQHQPITHPEQ 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-------ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L  H LIT  +       D  W         T D P+     S    N  L +    + G
Sbjct: 186 LVHHRLITVNN-------DSQWKLVNQITNETFDHPLKFQFTS----NDVLLVRDAVIHG 234

Query: 239 SGIALLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GIA +P Y    +  D  NL+ ++ +       V+  Y +  K   ++ AF
Sbjct: 235 LGIAWIPTYYFHELNHDQHNLLPLLPEWQCSGKEVFIMYRDRDKRPARVDAF 286


>gi|26991344|ref|NP_746769.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24986407|gb|AAN70233.1|AE016663_1 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 298

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 7/248 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L+VF  V   GS + AAEQ+  + S++SR +S LE ++G  L  R  R + LTE+G  
Sbjct: 6   EELQVFVAVIDCGSISAAAEQMGQTPSAVSRTLSRLEGKLGTTLVNRTTRRMDLTEEGRY 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++  +  L  +   P+G+LRI        + +   + EF   YP I+++
Sbjct: 66  FLERARLILQQMDEMEERLSMNRQTPTGRLRINAAAPFMLHAILPWIGEFRRQYPGIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D+  ID+     D AIR+ + +  SSL  R L    +   A+P YL+    P  +++
Sbjct: 126 LNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARSLGCSPVQVLASPAYLEQHGTPRQVED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+ F    P+ +  +    A  DR    P    L  +S  ++ Q  + G GI  L
Sbjct: 185 LANHCLLGFSQ--PESLNHWPLRHAQGDRWSIRP---TLVASSGETLRQLALAGEGIVSL 239

Query: 245 PDYIVKDN 252
             ++  ++
Sbjct: 240 SHFMTHED 247


>gi|87122541|ref|ZP_01078420.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86162183|gb|EAQ63469.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 300

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 123/269 (45%), Gaps = 25/269 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  +FT AA +L+L+Q++IS+Q+ GLE+++G  LF R  RGL LT+ G    
Sbjct: 11  LRSFEASARHLNFTQAAHELNLTQAAISQQVKGLESQLGTSLFKRLPRGLALTDAGLAYM 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E   +L     EL       S +L +   +      L   L  F   YPDI+I+  
Sbjct: 71  PAVHEAIGRLAAATDEL--FGKGQSRQLTVRVNLVFFTTWLAPRLSRFYEQYPDIKIRFT 128

Query: 128 ----LD--NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
               LD  NKD D+ + Y      +   ++S  L   +L  +      +P  L+   EPL
Sbjct: 129 SNIWLDEKNKDTDLDIRYGHG---VWPGLKSDRLTWDELFPV-----CSPELLEASEEPL 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           SI  L ++ L+     +    E +  WL        +P    +Q ++ +S ++  VLG G
Sbjct: 181 SIDLLAENTLLH----VIGYEEGWGYWLNQTGAYYSDPS-DGIQFDTLISALEMAVLGQG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPS 266
           IAL    +V D   +  LV   E+ I  S
Sbjct: 236 IALGRTSLVADMIASGKLVAPFEERIETS 264


>gi|254236482|ref|ZP_04929805.1| hypothetical protein PACG_02476 [Pseudomonas aeruginosa C3719]
 gi|126168413|gb|EAZ53924.1| hypothetical protein PACG_02476 [Pseudomonas aeruginosa C3719]
          Length = 306

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+VF   + SGS + AA QL +S +  S  +  LE+E+ ++LF R  R L LT +G 
Sbjct: 4   YDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  LQ    + +G L+++   D G+NLL   L EF   YP + +
Sbjct: 64  AFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           +L+L ++  D+     D AIR       SSL+   L   +     AAP YL    EP   
Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRY-GATADSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182

Query: 184 QELDKHNLITF 194
            +L +HN + +
Sbjct: 183 DDLREHNCLLY 193


>gi|116692634|ref|YP_838167.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116650634|gb|ABK11274.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 322

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L+    E + + ++PSGK+RI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAELDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  E
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTPQTPDE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L  H  +          E   W   ++R  GE  +     +  QVN   ++      G G
Sbjct: 185 LPNHVCLRLDTPASPAGE---W--RLERSDGEEAVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA +  Y V D+     L+R++ D    + +VY  Y        K++ F
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPDYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|312959149|ref|ZP_07773668.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311286919|gb|EFQ65481.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 290

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 128/285 (44%), Gaps = 22/285 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  +  SG+ T AAE+L+L++S++ + ++ LE  +G  L  R  R   LTE G 
Sbjct: 6   FDGVELFLHIVESGNLTEAAERLNLTRSAVGKGLARLEARLGTCLLQRSTRRQRLTEDGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        +LE  +  L+    +P G+LR++  +  G +     L   +  YP ++I
Sbjct: 66  AYYEHCLRALAELEAAESVLESGRQQPRGRLRVSLPLAFGHHYAAPALWSLMDRYPALEI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D++ +  D A+R+     +  L  R+L    +   AAP Y++      SI+
Sbjct: 126 EICFADRLVDLAQEGFDIAVRIGPLPDTDRLSARRLGEQSVCLAAAPAYMQRVGPIESIE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I +    P         + V  P        L ++   ++    + G G+A L
Sbjct: 186 DLATHRGIAYRHNTPH-------RSRVASP--------LLMDDLQAVADAAIAGVGLAWL 230

Query: 245 PDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLK 284
           P ++V     ++R   + + P +      ++  +P A     K +
Sbjct: 231 PSWLVAH--YVLRGQLEAVLPGYREQPSPIHVIWPTAAHMPAKTR 273


>gi|134291875|ref|YP_001115644.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135064|gb|ABO59389.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 301

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 3/193 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +   S  +  LE +VG+ L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMTSFTRAAESLGIQKGRASMVVRQLERDVGVALLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++  +++  Q     S  +  G+LR+    +L ++++   L + +  +P+++
Sbjct: 63  RAFYARARDLLAEVQELQSMFSGSGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC +RL  PI   +LI R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLVQEGFDCVVRL-GPIIDDTLIARPLGRLRMINAASPDYLARHGVPHTL 181

Query: 184 QEL--DKHNLITF 194
            +L    H ++ +
Sbjct: 182 DDLLGQGHRMVHY 194


>gi|167835507|ref|ZP_02462390.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 310

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 5/189 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     SGK+R+++T D G+N L   L EF   YPD+   + 
Sbjct: 67  NCCRQALRALDDADAMLQEGRNVVSGKVRLSSTADFGRNQLLDWLDEFNARYPDVTFSVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLSIQ 184
             +   ++  D  D AIR   P    +LI R+L        A+P ++    + +EPL + 
Sbjct: 127 ASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCASPAFVDKYGSPKEPLDLA 185

Query: 185 ELDKHNLIT 193
                N+IT
Sbjct: 186 RF-PCNVIT 193


>gi|107026182|ref|YP_623693.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|105895556|gb|ABF78720.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
          Length = 322

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L+    E + + ++PSGK+RI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAELDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  E
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTPQTPDE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L  H  +          E   W   ++R  GE  +     +  QVN   ++      G G
Sbjct: 185 LPNHVCLRLDTPASPAGE---W--RLERSGGEEAVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA +  Y V D+     L+R++ D    + +VY  Y        K++ F
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPDYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|332307486|ref|YP_004435337.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174815|gb|AEE24069.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 297

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 25/295 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +   V  +G F+ AA+QL    + +SR I+ LE ++   L  R  R + LT++G    
Sbjct: 10  LEMLIAVVDNGGFSAAAKQLDTQVARVSRAIAKLEQDLDCTLLNRTTRRVELTQEGLFFV 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +L   +  L+E    P+G LR+        + L   +  F   YP I+++LI
Sbjct: 70  NEVRVSLQQLNYAESRLRELKQTPTGTLRVDAASPFMLHQLTPLIAGFREAYPLIELELI 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +   ID+     D AIR+ + ++ S+L  R L    +H  A+P YL+    P++++ L 
Sbjct: 130 SNESIIDLIEKRTDVAIRIGQ-LEDSNLHARLLGNSQLHLVASPAYLQTLSAPMTLETLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           + ++I F           NW   +   + +P    +  +S  +I Q C+ G+G+ALL D+
Sbjct: 189 ECSIIGFA----HSANLNNW--PLKHRLPKPLKPNILGSSGETIRQLCLQGNGVALLSDF 242

Query: 248 -IVKD--NPNLVRIME-DVITPS-----FTVYFCYPEALKNTG---KLKAFRNFI 290
            I KD     L+++++  VI+P        VY+      KNT    ++ AF ++I
Sbjct: 243 MIAKDVREGKLLKVLQGSVISPHPREQINAVYY------KNTALSSRISAFLDYI 291


>gi|254502335|ref|ZP_05114486.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438406|gb|EEE45085.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 310

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F    R GSF+ AA  L +SQ ++S+Q+  LE  +G +L  R  R L+LTE G +  
Sbjct: 7   LSSFVNAVRLGSFSAAATHLGVSQPAVSQQVRSLEDTLGTRLINRTTRRLSLTEAGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S++  KL      +Q +  + SG+L ++      +  L G L +F   YP+I   + 
Sbjct: 67  AYASDILEKLSEADRSVQSNEAQMSGRLTVSLPYAFTEPELAGFLTKFKAAYPNILFDVQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D AIR+   ++   LI +KL  +     A+P YL     P + + L 
Sbjct: 127 LSDAMVDLQKERIDVAIRMGH-LRDDRLIVKKLGDMKRCLVASPDYLNRRGRPETPENLK 185

Query: 188 KHNLITF 194
            H+ + +
Sbjct: 186 THDFLLY 192


>gi|294679081|ref|YP_003579691.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294477897|gb|ADE87284.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB
           1003]
          Length = 296

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 13/193 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      L     +AR GSF  AA  L LS +++S+ I+ LE  +G++LF R  R ++LT
Sbjct: 1   MEAGLKALEAVQAIARRGSFRAAALDLGLSTTALSQTIARLEANLGVRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G      T+    ++      ++     PSG+LRI  +   G+ +    L EFL  +P
Sbjct: 61  EAGRDFAARTAPALAEIRAAMERVRAQRDTPSGRLRINASAQGGRAVAPLVL-EFLNSHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHYL 174
            +Q+ L+ + + +DI  +  D  IR       + L+ R ++ + + A       AAP +L
Sbjct: 120 QMQVDLVTEGRLVDIVAEGFDLGIR------PADLVPRDMIALPLGAPARHAVVAAPGWL 173

Query: 175 KNCREPLSIQELD 187
                PLS  +LD
Sbjct: 174 ARHPSPLSPADLD 186


>gi|238756888|ref|ZP_04618076.1| transcriptional regulator [Yersinia aldovae ATCC 35236]
 gi|238704718|gb|EEP97247.1| transcriptional regulator [Yersinia aldovae ATCC 35236]
          Length = 300

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 1/189 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  SGSF+  A QL +S S+ISR IS LE  +  +L  R  R L L++ G ++ 
Sbjct: 1   MAIFVKVVESGSFSAVARQLGVSPSAISRSISRLEKALATRLLQRTTRKLRLSQSGEEVF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  + +     +      + + +P G +RI+    +G+ ++  ++ EFL  Y  I +QLI
Sbjct: 61  KRCNVMLSAANSVMEVSGQYNQEPEGLIRISIPKAVGRFVIHPHMPEFLRRYSKIDVQLI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD+  +D+  +  D AIR+        +I R+L+ I     A P YL +   P    +L 
Sbjct: 121 LDDHYVDLIDENIDLAIRITDQ-PPPGMIGRQLMDIEHLLCATPEYLASRGTPSHPHDLA 179

Query: 188 KHNLITFGD 196
            H+ I  G+
Sbjct: 180 HHSCIYLGE 188


>gi|330967847|gb|EGH68107.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 307

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  ++SR+++ LE ++G++L +R  R ++LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAVSRRLAALENDLGVRLVHRTTRSVSLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E  +  L+  +   SG LR+      GQ ++   L E +L  P + I L 
Sbjct: 66  PHAKTMLQASEAARATLKADAGTASGILRVTAPSVFGQTVIMPLLPELMLENPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL    +P  + +L 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLARRGQPTVLDDLR 184

Query: 188 KHNLITF 194
            H  I  
Sbjct: 185 HHPCIAL 191


>gi|261339086|ref|ZP_05966944.1| hypothetical protein ENTCAN_05298 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318921|gb|EFC57859.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 300

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 124/275 (45%), Gaps = 13/275 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   V R GSF  AA++L +S +++S  ++GLE+ +  +LF R  R + LT+ G + 
Sbjct: 8   ELEVVMAVVRRGSFRGAAQELGMSATAVSNAVAGLESRLDTRLFNRTTRSVALTDAGQRY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    ++     E+   + +P+G LR+     +G   L   L +F++ YP ++++ 
Sbjct: 68  VARIGPALQEIRQASEEIHSDTGEPAGTLRLNVPNHIGTLFLDRLLIDFMIRYPKMRVET 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + + + IDI  +  D  IRL++ +    +       I     A P Y      P +  +L
Sbjct: 128 VSEARMIDIVAEGYDAGIRLQESVPQDMIAVPLTADIRQLVTATPGYFAQHGIPQTPDDL 187

Query: 187 DKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  I    + G +    +       T+  P   PR +   + + ++ ++    G G+ 
Sbjct: 188 LQHQGIGMRMSHGGIYRWELARRGETCTLAVP---PRFATSDLFASIAAVKA---GLGVG 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            LP+  ++D   +  LV ++ D   P   +   YP
Sbjct: 242 FLPELYIQDELKSGELVSVLNDWTQPFAGLRLYYP 276


>gi|254486247|ref|ZP_05099452.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214043116|gb|EEB83754.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 291

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 127/288 (44%), Gaps = 8/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD+++  Y VAR G+ + AA+ L +  +++ R I  LE  + +KLF RHARG   TE G
Sbjct: 3   NWDEIKTAYHVARLGTVSGAADVLGVHHATVIRHIDALEARLAVKLFQRHARGYKATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV +    +       ++      SG+L + + ++L + ++   L  F    PD+ 
Sbjct: 63  EDLLRVAAATNDQFSQLASRIKGRGDSVSGELVVTSLVELTR-VVTPVLVAFQKQNPDVV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +   +   +    A  AIR     Q    + + L+ + +  YA   Y+     P  +
Sbjct: 122 VRFLTGERLFRLEYGEAHVAIRAGSVPQQPDNVVQPLMKMRVGLYAHKTYIAEFGLPERV 181

Query: 184 QELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++   H  +   D  P+    F+ WL  +  P       C  +N   +++     G+GI 
Sbjct: 182 EDYANHRFVVQDD--PENRAPFSIWLRNI-LPEKAMTFRCTDMN---ALVDAITAGAGIG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L      ++P+LV +   +     +++      L  T K++ F  F+
Sbjct: 236 FLSLEDAANDPDLVEVHPPLAEWESSLWLVTHVDLHRTLKVQTFLTFL 283


>gi|34498007|ref|NP_902222.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34103862|gb|AAQ60222.1| probable transcriptional regulator LysR-family [Chromobacterium
           violaceum ATCC 12472]
          Length = 307

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 4/243 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V    SF  AA QL  S SS +R +  LE E+G  L  R ++ + LT  G   +
Sbjct: 7   IRIFCAVVEQKSFVSAARQLGTSPSSATRALQALEEELGAMLLARSSKQVELTMAGEAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +  + EL + +  P G LR +    LG+ LL   L      +P ++ +++
Sbjct: 67  PAARQMLDLQQQAEDELSQQAGAPRGLLRFSAPETLGRELLPAVLGRLADTHPGLRFEVL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  ++   D  D +IR   P  SS LI   L     H YA+P Y+     P S  +L 
Sbjct: 127 YSDSTLEPIRDKLDFSIRGAFPA-SSELIGHPLWHYRRHLYASPDYVARHGAPQSPSDLP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H ++      P+ ++ +N+++  ++ I     +  + NS   ++     G GIA L D+
Sbjct: 186 QHRVVIH--TAPRVLKAWNFVSD-EQAISLNLNAWHRSNSGNGVLDAVRAGMGIARLGDW 242

Query: 248 IVK 250
           + +
Sbjct: 243 LAE 245


>gi|317407262|gb|EFV87242.1| LysR family regulatory protein [Achromobacter xylosoxidans C54]
          Length = 306

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 21/245 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V R  S T AA+ LH++QS++SRQI  LE  +G+ L  R  R ++ T +G++
Sbjct: 12  DLVRGFVAVGRRMSITLAAQDLHVTQSAVSRQIRALEAHLGVPLLVRGFRSVSFTSEGAQ 71

Query: 66  LHRVTSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L R+      +L   T Q+   E        + + TTI +    L   L +F   +P I 
Sbjct: 72  LFRMADTWLSQLGDLTEQLRAPERRT----PVTVTTTIGVASLWLLPRLGDFQAAHPQID 127

Query: 124 IQLILDNKDIDISMDYADCAIR--LRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCRE 179
           +++  DN+ IDI  +  D AIR  LR  +   +  L    +V +   +  A         
Sbjct: 128 VRVAADNRVIDIDRESVDIAIRYSLRDTVPDGAVWLFGESVVPVAHPSLQA--------R 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
            L  +EL +H L+ F D     ++   WL    R +G  R    L+ N Y  I+   + G
Sbjct: 180 ALDARELQRHVLLEFDDPTRPWLQWSEWLNV--RGLGRVRPKGMLRFNQYDQIVHAALAG 237

Query: 239 SGIAL 243
            GIAL
Sbjct: 238 HGIAL 242


>gi|254467582|ref|ZP_05080991.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206684330|gb|EDZ44814.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 302

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 6/204 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   G+ + AA  + +S +  S +IS LE  + ++LF R  R L  TEQG+ 
Sbjct: 5   DNIRTFVRVYELGNMSAAARDMRISAAVASSRISQLEDHLNVRLFQRTTRLLNPTEQGNL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   ++  + ++   +  P G L +A  + LGQ L+   + +F   YP I I+
Sbjct: 65  FYHGAVKILEAVDEAEADISSVTQTPRGTLYVAAPLGLGQRLIAPAVPKFNEAYPLISIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A  L  P + S+L  RK+        AAP Y++   +P + +E
Sbjct: 125 LRLSDRKLDLAAEGLDAAFFLGVP-EDSNLRIRKIADCPRVLCAAPEYIRQRGQPKNSEE 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNW 207
           L  D H+ +      P   E F W
Sbjct: 184 LKTDAHDCLNL--RYPGAPE-FQW 204


>gi|146312895|ref|YP_001177969.1| DNA-binding transcriptional activator GcvA [Enterobacter sp. 638]
 gi|145319771|gb|ABP61918.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 304

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 134/299 (44%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   +++ +L     +LQ  S K  G L ++       + L   L  F   YP+I ++
Sbjct: 69  YFQDIKDIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPEIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGDKALKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLG 238
             +L +H L     L      D+    T  R +G   I+ +Q     S    ++Q  + G
Sbjct: 183 PADLAQHTL-----LHDASRRDWQ---TYTRQLGLNHIN-VQHGPIFSHSAMVLQAAIHG 233

Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I LKA
Sbjct: 234 QGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILLKA 292


>gi|330818575|ref|YP_004362280.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327370968|gb|AEA62324.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 294

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 122/262 (46%), Gaps = 17/262 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF+ A ++LH++  +ISRQ++ LE  +G  +F+RH R + LTE+G +  
Sbjct: 11  LRAFEAAARHESFSAAGDELHVTHGAISRQVAALEAWLGRPVFHRHGRRVRLTEEGRRYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              SE + ++     +L+E+   P+  LRI     +    L   L  F    P+++++L 
Sbjct: 71  ATLSEAFDRIAQASEQLREAG--PAHVLRINAQATIAMKWLLPRLSRFQREMPNVELKLS 128

Query: 128 LDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SI 183
             N  +D      D AIR    R P ++S     + V        +P  L+    P+ S 
Sbjct: 129 TSNAPLDTLDGQFDVAIRSGPGRWPNRASGHFLDETVL----PVCSPKLLRQM--PIASA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H L+   D  P    D  W A    P+   +      + YL+ +Q  V G G+AL
Sbjct: 183 EDLARHVLL-HSDTRPSAWRD--WFAAAGTPLRARKRQSFD-HFYLA-LQAAVDGLGVAL 237

Query: 244 LPDYIVKDNPNLVRIMEDVITP 265
            P  ++ +     R++  +  P
Sbjct: 238 GPLPLLDEELASGRLVAPLAGP 259


>gi|323528343|ref|YP_004230495.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385345|gb|ADX57435.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 312

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 131/289 (45%), Gaps = 15/289 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VAR  SF  AA +L ++ S+IS+ +  LE  +G  LF R  R + LTE G +
Sbjct: 13  DGVEAFLCVARHRSFRRAAAELGVTPSAISQAVRVLEERIGAALFVRTTRSVGLTEAGQQ 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + +L       ++   +P G LR++    +   LL   +  F   YP++Q++
Sbjct: 73  FLSRAKPAFEELVAASDAARDLGQRPRGLLRLSVPRAVVPLLLDPLIASFHEAYPEVQVE 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   N+ ID++ +  D  IRL + +++  +       + +    +P Y      P    +
Sbjct: 133 IAASNQLIDLASEGFDAGIRLGQFVEADMVALPLTPPLRLVVVGSPAYFTGRSRPEHTDD 192

Query: 186 LDKHNLITF----GDLIPKCM-EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +H  + +    G L P     D N    V+  +  P I+    + + +++   + G G
Sbjct: 193 LRQHACLRWRKSSGALAPWSFNNDGN---AVEIAVSGPFIA----HDFPTMLGAAMEGIG 245

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +A LP+ +V +   +  L+ +++ +      V+  YP   +   KL+AF
Sbjct: 246 LAQLPEPMVAEGLQSGKLIEVLKPLAPVIPGVFLYYPSRRQLMPKLRAF 294


>gi|148262047|ref|YP_001236174.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146403728|gb|ABQ32255.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
          Length = 313

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 124/287 (43%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA  GSF+  A   + SQ  ISRQI+ LE ++G++L  R  R L+LTE G    
Sbjct: 7   INTFIRVAERGSFSAVARDFNTSQPVISRQIAALEDQLGVRLIQRTTRRLSLTEDGQTYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   ++     +  +   P+G++R+     +G   L   L EF   +P+I + L 
Sbjct: 67  EHAKAVVDAMDAANASVGSARKTPTGQVRLGVPTAVGL-YLAARLPEFFARHPEISLDLK 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+  +  D  I + +  Q +S+I R L T      A+P Y+     P + ++L 
Sbjct: 126 MRDGAFDLIEEGLDLVISIAEATQ-ASVITRVLGTATSVLVASPAYVAARGAPETPRDLL 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           KH  I +     +   D  W    D       +     V+S  ++ +    G GIALLP 
Sbjct: 185 KHECIVY----TRPGADREWRFARDGVEESVNVQGRFHVDSSEAVRRAARAGLGIALLPR 240

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               D+     L+ +++  +     ++   P       + +A  +F+
Sbjct: 241 LTTIDDVAAGRLITVLDAFVPMQVKIHAILPSRRYVPARTRAILDFL 287


>gi|85703688|ref|ZP_01034792.1| Transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
 gi|85672616|gb|EAQ27473.1| Transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
          Length = 298

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 122/274 (44%), Gaps = 11/274 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD +R+F  VARS S + A   L +  +++ R+I+ LE EVG  LF +   G  L+
Sbjct: 1   MQPHWDDIRIFLAVARSESLSGAGRILRIDPATVGRRIARLEEEVGAPLFAKSPTGYALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L          ++    E+   +   SG++RI         LL           P
Sbjct: 61  EAGQRLMGHAMRAETAMQDAAEEMAGQAGGMSGQIRIGAPDGCANFLLPQVCAAIGAQNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++IQ++   +  +++   AD  I +  P      +Q K+    +H  A+  YL+     
Sbjct: 121 DLEIQIVALPRVFNLTRREADMVIAVSPPTAGRLTVQ-KVTDYQLHLAASVRYLRRHPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             I +L  H ++ +   IP  +  ++ ++L+      G  R+S L  NS    + +   G
Sbjct: 180 AQITDLGAHRMVGY---IPDMIFDKELDYLSEA----GVERVS-LASNSVSVQLNWVRQG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC 272
            GI +L D+ +     L +++ +V + + + Y  
Sbjct: 232 GGIGVLHDFSLPWARGLQKVLPEVFSLTRSFYLV 265


>gi|325529783|gb|EGD06633.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 318

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 135/292 (46%), Gaps = 13/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +  +GS T AA+  +LS + +   +  LE+ +G  L +R  R   ++  G   +
Sbjct: 7   MTVFVRIVETGSLTAAAQACNLSPTMVGNHLQALESRLGTVLIHRTTRRQKVSAFGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV   ++  +    +   +P G+LR+   +      L   L ++   YP++++ ++
Sbjct: 67  ERCVEVLGLVDDAERLALDHLKQPRGRLRVTAPVVFTNECLIPALADYYRRYPEVKLDIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+  +  + AIR+   + S  ++ R L    +   A+P Y+     P +   L 
Sbjct: 127 ATDSLADLFDEGFEAAIRIGV-LSSPDVVARPLAPYRLVLCASPAYVDEHGAPTTPHALG 185

Query: 188 KHNLITFGDLIPKC---MEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241
           +H  +T+    P+         W+  ++ P G   IS    L+++S  ++ +  + G GI
Sbjct: 186 QHQCLTYA-YPPRSEWHTAQSRWV--LEGPDGPLHISVEGRLKIDSAEALRRAALRGLGI 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP  +++++     LV IM D   P  ++   Y +  + + KL++F  F+
Sbjct: 243 AMLPSMLIREDIRAGRLVEIMPDFAAPERSMSLLYLQERQKSPKLRSFTEFV 294


>gi|218677106|ref|YP_002395925.1| Transcriptional regulator [Vibrio splendidus LGP32]
 gi|218325374|emb|CAV27460.1| Transcriptional regulator [Vibrio splendidus LGP32]
          Length = 300

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 146/300 (48%), Gaps = 26/300 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  +++VF  +  SGS T AA++L LS+S +S  + GLE  +G+KL  R  R  +LT
Sbjct: 1   MKNELHRMQVFAQIVESGSITKAADKLDLSKSVVSHHLQGLEQHLGVKLLTRTTRRQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G + ++   E+   +   + E++ES    +G + I +   L  +L+   + EF+  +P
Sbjct: 61  DAGQRFYQRCLEMRKLMSLAEEEVRESCSDFAGTITITSPHTLMTHLIGPAMCEFMKSHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR- 178
            I+ QL+ ++  +D+   Y D ++ +   P  +S  I  KL  +H      P YL   + 
Sbjct: 121 RIEPQLLANDMRVDLIEKYIDLSVTVGALPDSTSRAI--KLGELHQVLCCHPDYLTKVQI 178

Query: 179 -EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV------NSYLSI 231
            +P++  +L ++      D I    E  N   + +  I + ++S  Q       +S  +I
Sbjct: 179 LQPITPSDLSQY------DYIANQWEGINSQRSFE--INKGKVSTYQFRASRIGDSVPTI 230

Query: 232 MQYCVLGSGIALLPDYIVKDN---PNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAF 286
               + G GIA LP   ++++     LV I+  + V+  SF V   Y   L+   +++AF
Sbjct: 231 RMMALNGLGIACLPKQAIEEDLKKGTLVNILPKDQVLKASFYVVHNY--GLQVPARIRAF 288


>gi|213421115|ref|ZP_03354181.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 213

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 96/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITF 194
           L KH+ + +
Sbjct: 185 LQKHHAVGY 193


>gi|308048924|ref|YP_003912490.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307631114|gb|ADN75416.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 313

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 1/180 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++F+ V + GSFT AA    +  S++S+QI  LE  +G++L  R  R  +LT  G ++
Sbjct: 6   QLQLFHDVVQQGSFTKAAALHQMDNSALSKQIKKLEASLGVQLLNRSTRSFSLTSAGEEI 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              TS +   L+  Q        +P G L+I   +  GQ  LQ  +  F+  YP +QI L
Sbjct: 66  LAQTSVLMETLDQIQSIADAYQSEPKGILKITAPVFFGQVYLQPVVARFMQRYPAVQINL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++   +  D  D A R+ K +  S+LI RKL   +    A+  +++    P + + L
Sbjct: 126 TLDDRRAHLIADRYDLAFRVGKLV-DSNLIARKLANTNFALLASRDFIERHGLPHTPEAL 184


>gi|206564415|ref|YP_002235178.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198040455|emb|CAR56440.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 302

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 119/263 (45%), Gaps = 22/263 (8%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+  +D L     F  V   GS T  A  L  + S +SR I+ LE  +G +L  R  R L
Sbjct: 1   MARKFDHLGDVEAFVTVVEKGSMTAGAVALGSTPSVLSRAITRLEARLGTQLLRRSTRRL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G      +   +  ++  +  +Q      +G +R++     G   L   L+ F  
Sbjct: 61  SLTEHGRLYLEQSRAAFLLIDDAERAIQGHGGTLTGHVRLSVPTTYGHYRLPPLLRRFTR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P ++++L + N+++D+  +  D AIRL + +  S L+ RKL    +   A+P Y+ + 
Sbjct: 121 EHPHVRVELNIANRNVDLVAEGFDLAIRLGE-LPDSGLVARKLEDAALCLVASPEYVAHA 179

Query: 178 REPLSIQELDKHNLITF-----GDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSY 228
             P ++ +L+ H  + F     G + P       +D +WL         P  +    +  
Sbjct: 180 GTPGNVADLEHHLCLPFMLPSSGRIAPWVFRDGDQDIDWL---------PASNVAVSDDV 230

Query: 229 LSIMQYCVLGSGIALLPDYIVKD 251
           L ++     G+GI    D+IV+D
Sbjct: 231 LGVVSMAQSGAGICQTYDFIVQD 253


>gi|186471148|ref|YP_001862466.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197457|gb|ACC75420.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 318

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 136/291 (46%), Gaps = 22/291 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F ++A+  S + AA  L L+  + ++++  +E  +G +L  R  R ++LT +G    R  
Sbjct: 12  FILLAKLKSMSGAARALDLTPPAATKRLGIIERRLGARLVNRTTRSVSLTPEGETYLRYA 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           +++  ++   +  +  +   P G LRI  T+  G+  +   + +F   +P++++Q  + +
Sbjct: 72  TQIVGQVREMEEAISGAGRDPQGLLRINATLGFGRTTIAPLVSDFAKRFPNVEVQFEVTD 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+     D AIR  + +  S L  R++++      A+P YL+    P  + +L +H 
Sbjct: 132 RPVDLIEGAFDMAIRFGE-LPDSRLSARRIMSNRRFLCASPKYLERFGTPERVDDLQQHR 190

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGIAL- 243
            I     I +  +D      V R I    I  ++V   LS      ++++ + G GI + 
Sbjct: 191 CI-----IHRQNDD---AYGVWRYIVNDHIEAIKVKGALSSNDGDIVLRWALDGHGILIR 242

Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               L  Y+      LV  + + + PS  ++  YP     T + +AF +F+
Sbjct: 243 SEWDLAKYVQSGRLKLV--LPNTVLPSADLFVYYPRQRNQTARARAFIDFL 291


>gi|254522982|ref|ZP_05135037.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219720573|gb|EED39098.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 297

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 18/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +R F  +    SFT A+E L L +++++  I  LE  +G++L  R  R +  T +G 
Sbjct: 4   FTAMRAFVRIVERRSFTRASEDLGLPRATVTDAIKALEQRLGVRLLNRTTRLVAPTLEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +   ++  V P G LRI     LG++LL  +L +FL  YPDI++
Sbjct: 64  AFYGRCLRLIADMDDAEAAFRD--VPPRGPLRIEVHGTLGRHLLFPHLPDFLQRYPDIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  D AIR+   +  S L  R+L  +     A+P Y++    P  I+
Sbjct: 122 DVSEGDRYVDLLREGVDAAIRVGT-LADSDLAARRLTLLREVTVASPDYVRAKGMPEGIE 180

Query: 185 EL-DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            L D H+++ +     G LIP   +    +  V  P    R+     +++L      + G
Sbjct: 181 CLKDGHDMVGYRSSATGQLIPLEFQQDGQVRYVPLPA---RVLVSGADAFLGA---ALAG 234

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI   P Y +        LV ++  +      +   YP     + +L+ F +++
Sbjct: 235 LGIIQAPRYRMDPYISRGELVELLPQMPPTPSPLNLVYPRNRTPSPRLRVFIDWV 289


>gi|206560928|ref|YP_002231693.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|221199446|ref|ZP_03572490.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205652|ref|ZP_03578667.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|198036970|emb|CAR52885.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|221174490|gb|EEE06922.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180731|gb|EEE13134.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 305

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 119/282 (42%), Gaps = 6/282 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF      GS   AA +   S +   + +S LE+ +  +L  R  R L LT+ G   +
Sbjct: 7   INVFVAAVDEGSLAAAARRFGFSAAMAGKYVSELESTLNARLLQRTTRRLNLTDVGRAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L     E  +S     G LRIA  +  G   L   +  ++  +P + + + 
Sbjct: 67  DRCVQILDALAEANREASDSQTIARGVLRIAAPVTFGALHLGNVVARYMERHPHVNVDVS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++    AD AIR+   +  SS++ RK+    M   A+P YLK    P + +EL 
Sbjct: 127 LSDRYVNLLETGADLAIRI-GTLADSSMVARKIAPCRMIVCASPAYLKRHGTPHTPEELG 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +   +TF + +     D+      DRP        +  N+   ++   + G+GIA  P +
Sbjct: 186 QAQRLTFSEAVSS--GDWTLRDEKDRPHVIDGTCRMSANNMQMLLASTLAGAGIAYGPTF 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +         LV ++    T   T+   YP       K++ F
Sbjct: 244 VFGKYVARGELVALLPTYRTTELTIQAVYPSTRHVPLKVREF 285


>gi|190890816|ref|YP_001977358.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190696095|gb|ACE90180.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 306

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 101/196 (51%), Gaps = 1/196 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              +D++R F  VA  G+ +  A++L + QS+++R ++ LE  VG+ L  R  R +TLTE
Sbjct: 5   GLGFDRMRTFVRVAERGNLSMVAKELGIGQSTVTRHLNELEEAVGVALLSRTTRRVTLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS+ +    ++   +E    E + +   P+G +R++ T  LG   +   + +F  L+PD
Sbjct: 65  EGSRYYTNCLQILRLVEQAAEEARAARQAPAGAVRLSCTAALGVMHVTRMIFDFQDLHPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L L ++ ID+  +  D A+RL  P+  SS+    +         AP YL     P 
Sbjct: 125 IRVDLNLTDERIDLVREGVDVALRL-GPLADSSMKLHAVGESQRLLVGAPAYLSARGRPE 183

Query: 182 SIQELDKHNLITFGDL 197
              +L ++  I   ++
Sbjct: 184 RPADLSRYETIVMSNV 199


>gi|153833544|ref|ZP_01986211.1| transcriptional regulator [Vibrio harveyi HY01]
 gi|148870195|gb|EDL69136.1| transcriptional regulator [Vibrio harveyi HY01]
          Length = 298

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 29/216 (13%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA   SFT AA+ LHL+  +IS+QI  LE ++G  LF RH+RG+ LT +G +L 
Sbjct: 9   LWLFSQVAEHSSFTSAAKALHLTTGAISQQIIQLEEQLGFTLFERHSRGIRLTPKGLQLS 68

Query: 68  RVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + T    +E+   LE  QIE      KP  ++R+  T       L   L+ F L  PD+Q
Sbjct: 69  QSTQFHFTEIGKTLEELQIE------KPHNEIRLKLTPSFAFKWLVPRLESFHLENPDLQ 122

Query: 124 IQLILDN-------KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           +Q+  +        KD D+++DY     R +    +  ++  +L+ +      +P YL++
Sbjct: 123 VQIFAEGALVNSELKDYDVAIDYGSHPYRDKS---AERILDEQLLPV-----MSPKYLED 174

Query: 177 CR--EPLSIQELDKHNLITFGDLIP--KCMEDFNWL 208
            R  + L        +     D +P  K   D+ WL
Sbjct: 175 HRWLKTLKASPEQWRDATLLHDAMPWDKAPRDYEWL 210


>gi|332530133|ref|ZP_08406082.1| transcriptional regulator [Hylemonella gracilis ATCC 19624]
 gi|332040403|gb|EGI76780.1| transcriptional regulator [Hylemonella gracilis ATCC 19624]
          Length = 319

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 129/285 (45%), Gaps = 13/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +  +GS + AAEQL  +Q +ISR++  LE  +G++L  R    + LTE G + +
Sbjct: 16  IETFVRIVEAGSLSAAAEQLGSTQPTISRRLQALERAMGVRLLQRTTHAMRLTEDGQRCY 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +  + E + +  +P+G LR+      GQ  L   L ++L  YP ++++ +
Sbjct: 76  VRAKDLISSWQAFESETRGAGEEPAGTLRVVAPHAFGQQQLVQPLADYLRRYPKMRVEWL 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--REPLSIQE 185
           L ++  D   +  DCAIR+   +Q  S++   L  +      AP          P  +  
Sbjct: 136 LHDRMPDFIAEGVDCAIRVGG-VQDPSVVALPLGEVPRIVVGAPSLFDGALPTHPAELTR 194

Query: 186 LDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L TF  + I       + +A +     +PR+S    +   ++    V G G+A+ 
Sbjct: 195 LPWLALRTFYRNEISLTRAGSDEVARIGI---QPRLST---DGLYALRTAAVEGLGLAVG 248

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             + +++      LV ++         V+  YP+A  +  +L++F
Sbjct: 249 SAWAMQEELRAGRLVHVVPQWRADPLPVFLVYPQARLHPARLRSF 293


>gi|260553990|ref|ZP_05826255.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260404876|gb|EEW98381.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 326

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 134/291 (46%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G  + 
Sbjct: 10  LKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDGKLIL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +QI   
Sbjct: 70  ERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHIAPILSKLMMLYPKLQIHFD 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+     D  IR+   I + ++I +KL +      AAP YL     P SI++L 
Sbjct: 130 TIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCAAPSYLLKHGVPDSIEDLQ 188

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H+ +T  +   +      W    A+ D  +  +PR      N+   I Q  + G GI  
Sbjct: 189 THDCLTISE---RDQSSVLWKFRHASEDVSVHIKPRFVS---NNGEIIHQLAIEGHGIIF 242

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
              + V D   L+      I P +     V+  YP  LK++ KL+    FI
Sbjct: 243 RSIWDVAD--ELITGQLQHILPEYWQDADVWAVYPSRLKSSSKLQTCILFI 291


>gi|260597454|ref|YP_003210025.1| hypothetical protein CTU_16620 [Cronobacter turicensis z3032]
 gi|260216631|emb|CBA29934.1| hypothetical protein CTU_16620 [Cronobacter turicensis z3032]
          Length = 312

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 131/284 (46%), Gaps = 10/284 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +  SGS + AA+Q++ +Q+++SR++  LE  +G +L  R    + LT+ G + +
Sbjct: 12  MHTFVRIIESGSLSAAAQQMNTTQATVSRRLKSLEDLLGARLLLRTTHAMKLTDDGERCY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V    +  + E++ +  +P G LR+      GQ+ L   L  FL  YP + +  +
Sbjct: 72  QHARSVLASWQALEDEIKNAEGEPVGVLRVRAPHAFGQDQLIEPLTAFLNRYPGLCVDWM 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K  D   +  DCA+ +  P    S+I  +L  +     A+P  L+       I +L 
Sbjct: 132 LNDKSPDFIGENIDCALHV-GPDIDPSVIAVQLAEVPRIVVASPALLERHAPVKEIDDLA 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIALLP 245
               +       + +   + +   DR      PR+S    +S  +I +  + G G  ++ 
Sbjct: 191 ALPWVALSTFYRREVT-LHHVQRGDRQAFTVMPRLSS---DSLYAIRRAILNGLGAGMVS 246

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            ++V+D+     LV+++     P+  VY  YP A     +L+ F
Sbjct: 247 AWVVEDDLREGRLVQLLPQWQAPALPVYLLYPWARYYPARLRRF 290


>gi|307129723|ref|YP_003881739.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Dickeya dadantii 3937]
 gi|306527252|gb|ADM97182.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Dickeya dadantii 3937]
          Length = 318

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 12/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +A  GS T  A +  LS  ++S++++ LE  +G++L  R  R L LT +G  
Sbjct: 5   DDLLFFSRIAALGSLTAVARESGLSLPAVSKRLTQLEQRLGVQLIRRTTRRLDLTPEGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  + H++E  + +++ + +   G+L +  +   G+  +   +  F   + ++++Q
Sbjct: 65  YAEGALPILHEIEELESQVRRNQLTLRGRLTVNASFGFGRRHIAPLISAFARQHGELEVQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +++     D  IR   P   S L+  +L+       AAP YL  C  P ++ +
Sbjct: 125 LQLTSQPLNMLDAGVDIDIRFGAP-PDSRLVAHRLMDNPRVLCAAPAYLARCGTPQTVAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L  HN +    ++ +   D+  W    D R         L  N    IM+Y + G GI L
Sbjct: 184 LAGHNCL----VLRQYESDYGLWRFYRDGREFTHRAFGNLSANDGEVIMRYALDGHGIIL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + V+    +  LV ++ D I P   +Y  Y +      ++ AF   ++LK
Sbjct: 240 RSLWDVRPWLSSGELVALLPDYIMPEADIYAVYQQRRHVPARISAF--IVWLK 290


>gi|167717863|ref|ZP_02401099.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 321

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G +
Sbjct: 10  NALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGGR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S  +   +L ++T        +   +  F+  +P+I ++
Sbjct: 70  YAQQVRAALALLADATREVRAS--ERDKRLVVSTLPSFAARWITPRIGPFIERHPEIDLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 128 LRASDSLVDFARDDVDVAIRFGHGVYPGLHVE-PLLDETFFPVCAP-TLNGGMLPETPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 186 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 240

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++A RN++ 
Sbjct: 241 RSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRNWLL 289


>gi|331656360|ref|ZP_08357322.1| LysR-family transcriptional regulatory protein [Escherichia coli
           TA206]
 gi|331054608|gb|EGI26617.1| LysR-family transcriptional regulatory protein [Escherichia coli
           TA206]
          Length = 186

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 80/143 (55%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 30  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 89

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 90  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 149

Query: 124 IQLILDNKDIDISMDYADCAIRL 146
           ++L++DN  +DI     D  IRL
Sbjct: 150 VELVVDNGFVDIVEGRFDAGIRL 172


>gi|225626872|ref|ZP_03784911.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225618529|gb|EEH15572.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
          Length = 383

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 3/189 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT TE G  
Sbjct: 84  DNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRV 143

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI+++
Sbjct: 144 FYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEVR 203

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P S + 
Sbjct: 204 LRLSDHEVDIMSEGVDVAFKLGV-LENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPEA 262

Query: 186 L--DKHNLI 192
           L  D+H+ +
Sbjct: 263 LLSDRHHCL 271


>gi|70734243|ref|YP_257883.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68348542|gb|AAY96148.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 316

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 126/290 (43%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+I  LET +G  LF +    G  LT
Sbjct: 10  TLNWDDLKFFLEVARTRKASSAAKRLAVDYTTVSRRIGSLETALGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  FL  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGTFFITPQLSHFLDAYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL      
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLQLYATQEYLDRHPPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +    E   +LA V         S   +  Y++  Q    G  
Sbjct: 189 RRPGDLGEHQFISYVDDLAFSSE-LLYLANVVPGASANLRSTSVIAQYVAAQQ----GRS 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +P L+ ++   I  +   +    E L+   ++    ++I
Sbjct: 244 LAILPCFLAAQDPRLLPVLPKEINLTRQFWMYCREDLRKLKRITLLWDYI 293


>gi|89067908|ref|ZP_01155352.1| Transcriptional Regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89046506|gb|EAR52562.1| Transcriptional Regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 294

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 115/257 (44%), Gaps = 11/257 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  L  F  VAR GS   AA QL  + ++  RQ+  LE ++G++LF R A G  LT  
Sbjct: 2   LDWKALPAFLAVARHGSLRAAAAQLGGTHATARRQVEALEAQLGVQLFRRGADGFRLTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     E    L      +Q    + SG++R++     G  +L   L EF  LYP+I
Sbjct: 62  GRTLLPQALEAETALLRGFNAVQGLDREASGRIRVSADPLTGHFMLAPVLAEFAALYPEI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L      I     D +IR    +    ++ RKL    +  +AA  YL + R P +
Sbjct: 122 DVELQLSYGIDSIEKLETDVSIRSVAEV-DEDVVGRKLFPAAIGIFAARSYL-DRRLPAA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +      I +G  +P+ +E       ++R P  E R+     +  +  +     G+G+
Sbjct: 180 GPKGQGLQWIGYGP-VPELLE------YIERSPFPEARVRHTIPDPEMH-LHMARAGAGL 231

Query: 242 ALLPDYIVKDNPNLVRI 258
           ALL  ++    P L R+
Sbjct: 232 ALLSAWVEAKFPELQRV 248


>gi|86136116|ref|ZP_01054695.1| Transcriptional Regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85826990|gb|EAQ47186.1| Transcriptional Regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 308

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 134/304 (44%), Gaps = 29/304 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F    R  SF  AA++L ++ +++S QI  LE ++G+ LF+R  R L LTE G++  
Sbjct: 10  IQTFEAACRHLSFKDAADELCVTPTAVSHQIKSLEEQLGVPLFHRLTRALKLTEDGARYA 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E +   E   + L+E  ++  G L I+TT     N L   L+ F   YPDI ++++
Sbjct: 70  PFIIEAFKNFEAASLALEEDVLE--GTLTISTTGSFAANWLSPRLRSFYEKYPDISVRVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D      D AIR      S       +V +     A    L+  +  ++  +L 
Sbjct: 128 SSDQLVDFKTSNVDVAIRY----GSGDYADSNVVWVLNDKVAPVCSLEKAKTLVNATDLL 183

Query: 188 KHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----G 238
              LI      F +  P      N +   DR + EP ++        S    C+L    G
Sbjct: 184 GSKLIEYKWSGFSETDPSWASWMNAVGLADRKV-EPYVT-------YSEEHICLLTASDG 235

Query: 239 SGIALLPDYIVKDNPNLVRIME----DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL+   ++     L R M     D    + + +   PE   N  +++ FR+++  +A
Sbjct: 236 HGVALVS--LLAAARFLERQMLVAPFDTALDNKSYFLVCPETYANRARVRVFRDWLLDQA 293

Query: 295 RDWK 298
            +++
Sbjct: 294 DEFR 297


>gi|300693309|ref|YP_003749282.1| transcriptional regulators, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299075346|emb|CBJ34640.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           PSI07]
          Length = 305

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 15/248 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LET++G +L  R +  +++T  G 
Sbjct: 4   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAELETQLGTRLLQRSSHRVSVTPVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + L+ G L EF   +P ++I
Sbjct: 64  AVYRHAREMADASAAIETLAGAARSEPAGVLRVGTSPLLAETLVSGWLAEFAQAHPKLRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L + N  +D+     D AIR    P+ S  ++ R L         +P  +    EP + 
Sbjct: 124 ELDVSNTYVDLIEQRIDVAIRAATGPLPSRDVVARHLAASPRVLVGSPALIARVGEPDTP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYLSIMQYCVL 237
             LD    +  G L+       +W+    R      PI  PR++    ++ +++ +  + 
Sbjct: 184 AGLDALPCLGQGTLV----RSRDWVLLDARGHRHVIPI-RPRMAA---DNLIALREAAIA 235

Query: 238 GSGIALLP 245
           G G+A+LP
Sbjct: 236 GLGLAVLP 243


>gi|293602467|ref|ZP_06684913.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292819229|gb|EFF78264.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 307

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 130/292 (44%), Gaps = 18/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V + G+ +  A +L L+  +IS +++ LE  +G++L  R  R +++T++G    
Sbjct: 7   LAFFSLVVKHGNLSATARELGLTPPAISARLARLEQRLGVRLLNRTTRRVSVTQEGELYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +  +  +  +P G LR+  T   G+  +   + +F   YPD+++ + 
Sbjct: 67  AEGGRILADLEALERSVSSARAQPQGLLRLNATFGFGRAHIVPAVSDFARQYPDVEVLMR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D A+R    +  + L  RK+ +      A+P YL    EP +  +L 
Sbjct: 127 LTDRPLNLIEEGFDVAVRF-GDMPDARLTARKIASNRRLLCASPRYLDTYGEPRTPGDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV------NSYLSIMQYCVLGSGI 241
           +H  I          E+     T     G+ R   ++V      N   S +++ + G GI
Sbjct: 186 RHRCIV-------VRENDVAYGTWRLQAGQ-RAETVKVRGPVSSNDGQSALEWALDGHGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  ++          L  ++ D  TP   ++  YPE L    K  AF  F+
Sbjct: 238 VMRSEWETAAYLREGRLREVLSDWRTPPADIHALYPERLNLPAKTVAFVEFL 289


>gi|221199047|ref|ZP_03572092.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205305|ref|ZP_03578321.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175096|gb|EEE07527.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181498|gb|EEE13900.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 325

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 123/289 (42%), Gaps = 15/289 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF   A  GS   AA    +S  + S  +  LE  +G++LF+R  R L+LTE+G +L   
Sbjct: 9   VFVRAATLGSLRAAAVDQGISPQAASHAVMQLEKALGVRLFHRTTRKLSLTEEGERLFDS 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  L +   + + S  + +G LR++    LG  +L    + F   YPD+Q+ +  D
Sbjct: 69  AKPALAMLASALGDARRSKSEVAGLLRVSAPRALGLPVLWPCFEAFEHAYPDVQLDVRFD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+  + AD   R   P  + S I R LV I +   A+P Y+     P +I EL  H
Sbjct: 129 DQFTDLVTERADVGFRGGPPPSAGS-IARPLVPIQLIVCASPEYIARHGAPRTIDELAAH 187

Query: 190 NLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
               +     G L        + +A  D P      + L VN         + G G+  L
Sbjct: 188 RCTGYRRANTGKLAQWTFRVGDEIAYRDVP------AALTVNDTDMETHAVLSGLGVGQL 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +       +  LV ++ + +     +Y  Y    + + ++K F +F+
Sbjct: 242 GSFSAAMHIRSGRLVPLLTEHVVEHGMIYLYYGHRTERSLRVKTFIDFV 290


>gi|157374456|ref|YP_001473056.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157316830|gb|ABV35928.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 301

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 132/257 (51%), Gaps = 8/257 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SG+   AAE+L ++  ++S+ IS LE E+ + L YR  R ++L+E G + 
Sbjct: 11  RIAIFCQVIDSGTMRGAAEKLGMTPPAVSQYISQLEAELEVTLIYRSTRKISLSEAGEQY 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R   ++       +  + E     +G+LR++  + L    +   LK  +   P++ + +
Sbjct: 71  YRHGKKMLSAAADAEEAINELKHSLNGELRVSVPVGLATKPIAQALKPLISTNPELNLTI 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I  ++ ID+  +  D A+R+ +P + S+ I   L ++  H +++  YL+    P++  +L
Sbjct: 131 IAHDQYIDLIEEKVDIAVRVGEP-EDSNFIYHPLGSVRKHLFSSAEYLQKNGNPVTPDDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +KH+ +  G +  +   +        +P    P++  L+ N   S++ +   G GIA+LP
Sbjct: 190 EKHSWL--GLINKQTFSEIELHHPKHKPYRLTPKLR-LRFNDLNSLICHVQEGFGIAVLP 246

Query: 246 DYIVK---DNPNLVRIM 259
           +  V    ++  LVR++
Sbjct: 247 ELEVLHLIESGELVRVL 263


>gi|262280820|ref|ZP_06058603.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262257720|gb|EEY76455.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 298

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 18/294 (6%)

Query: 6   DKLRVFYV---VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L+ F++   VA+  SF+  A QL L +S+++  I  LET   ++LF+R  R ++LT+ 
Sbjct: 2   DRLQQFFIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYCVRLFHRTTRKVSLTQD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      +    E  +  +Q       G L+++    +   ++   L +F   YPDI
Sbjct: 62  GQRILPECQNLLFDYEQLEQLIQAQKQHYRGTLKVSMPSRIVHQVIIPELPDFYSRYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL   +   D+     DC +R+ + + +SSLI + +  + M   A+P YL++   P  
Sbjct: 122 HLQLNSSDDITDLIEKGIDCVVRVGQ-LDNSSLIAKFVGNLIMVNCASPDYLEHYGIPEQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++L +H LI +   + +    F   +    +D        S L VN+  + +     G 
Sbjct: 181 LEDLSQHKLINYAGAVGEKQGVFLYQDGTVMMD--------SALSVNNTEAYIAAACAGL 232

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP Y V+   +   LV ++      S  +   YP       +L+ F  ++
Sbjct: 233 GIIQLPYYDVQEKIEQGTLVEVLSAHTPQSLPLNILYPNRSYIPKRLEIFMEWV 286


>gi|170694881|ref|ZP_02886031.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140241|gb|EDT08419.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 288

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 129/291 (44%), Gaps = 14/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ +R F  +A +G+ + AA +L +  ++++R+I+ LE  +G  L  R AR   LTE 
Sbjct: 2   FDWNDMRHFIALAEAGTLSGAARKLKVDHATVARRIAALEHALGETLVDRLARRWRLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  + RV   +  +    ++ ++  +     ++ ++         L     E    +P+I
Sbjct: 62  GLDVARVAEGMQTQAHALEMAVRSRNTGARARVVVSAPPAFASVFLAPRFAELASRHPEI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+     I +S   AD A+RL +P +  S + R++ ++    YAA  Y+   R    
Sbjct: 122 ELTLLGTQPMISLSRQEADIAVRLTQPTE-PSYVSRRIGSVSYGLYAAQGYI--SRASGE 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q +  H  +   D +P+ +    WL       G  RI   + N  +S +     G GIA
Sbjct: 179 WQFIAYHAAL---DHVPEQV----WLLDF---AGGRRIG-FRSNDLVSQLAAAREGLGIA 227

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             P +   D+  ++ +  D    S  +Y      ++    ++   +FI  K
Sbjct: 228 AFPHFFAADDERVIALPVDAEKLSRDIYLIAHVDMRRQAAVRLVMDFIAEK 278


>gi|330882508|gb|EGH16657.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 222

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 11/220 (5%)

Query: 38  ISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI 97
           +  LE  +G+ L  R  R   LTE G+  +    EV   +  ++   +++   PSG LRI
Sbjct: 1   MRALEQRLGVSLLQRTTRRQRLTEFGTAYYERCLEVLGLVAESEQLAEQAQGDPSGTLRI 60

Query: 98  ATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQ 157
              +  G  +L   L  F L +P++++ L+L N+ +D+  +  D AIRL    QSS LI 
Sbjct: 61  TAPLTFGSEVLAPALAGFSLRFPEVKLDLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIA 120

Query: 158 RKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCME----DFNWLATVDR 213
           R +    +   AAP YL     P   ++L  HN + F    P   E       W  T   
Sbjct: 121 RLMQDYTLTICAAPSYLARHGTPAHPEDLGAHNCLAFS--YPAGDEWRTAGTQWRMT--G 176

Query: 214 PIGEPRI---SCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           P GE  +     +  N+   + Q    G G+ +LPD +V+
Sbjct: 177 PEGEVLVDVDGSMVANTSAGLYQAACAGMGVVMLPDALVQ 216


>gi|327190980|gb|EGE58034.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 302

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 135/294 (45%), Gaps = 17/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +RVF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E  +     +  +P G LR+     L ++ +  +L  FL  YP+I+ 
Sbjct: 64  AYYQRCLSILADIEDAEGAF--AGARPKGLLRVDVHGTLARHFVLPSLPSFLQTYPEIEF 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R+  P   S ++ R+L  +     A+P Y+     P    
Sbjct: 122 YMSEGDRLVDLVREGIDCVVRVGTP-GDSDMVARRLAMLDEITLASPAYIAAHGLPQHPD 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L  H ++ F     G L+P    +F     V R I  P  + + VN+  S +    +G 
Sbjct: 181 RLTGHRMVGFRSSSTGTLLPL---EFIVDGAV-RNITLP--AAVAVNAAESYISAARMGL 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  +P Y  +++     LV ++E+       V   YP   + + +++ F +++
Sbjct: 235 GLIQIPRYHAENDLAEGRLVHVLENFPLTPTPVSLLYPRNRQLSPRVRVFIDWL 288


>gi|307249905|ref|ZP_07531879.1| hypothetical protein appser4_7030 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858094|gb|EFM90176.1| hypothetical protein appser4_7030 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 298

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 138/290 (47%), Gaps = 14/290 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE G  
Sbjct: 5   NAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTEAGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+IQ+ 
Sbjct: 65  YYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPNIQLN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P ++++
Sbjct: 125 IEFSDRRVDVVAEGYDLVLRI-GTLEDSSIVAKRIARSELVLIASPDYLAKQGTPENLEQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + + +       D +    +     +P    +  N Y +++Q    G GI  LP
Sbjct: 184 LTEHTCLIYENHQQWQFTDGDQKVKI-----KPNAHVISNNGY-ALLQMTKAGQGIVNLP 237

Query: 246 DYIVKDNPNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ K++ N  R++E  I P     S  +   YP     + K+K    F+
Sbjct: 238 LFLAKEDINAGRLIE--ILPQYKQHSIDISVLYPHRRYLSPKVKVLIEFL 285


>gi|239833168|ref|ZP_04681497.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239825435|gb|EEQ97003.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 300

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 124/283 (43%), Gaps = 21/283 (7%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSF  AA +L ++  ++S  ++ LE  +G++L  R  R +  TE G +L +  +    ++
Sbjct: 19  GSFRGAARELAIAPPAVSHAVATLEDSLGVRLLARTTRSVAPTEAGRRLLKRLAPALAEI 78

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           +       E+  +P+G LRI+  +   Q +L   L EF+  YPDI + L +DN   DI  
Sbjct: 79  DQALGAALETKDRPAGILRISAPLVATQLMLAPRLGEFVRHYPDITLDLRIDNAFTDIVA 138

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
              D  +RL + +++  +  R           +P Y +    P   ++L +H        
Sbjct: 139 AGFDAGVRLGENLEADMIAVRLGGPQRGAVVGSPAYFEARPAPSHPRDLAQH-------- 190

Query: 198 IPKCMED-------FNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV 249
             +C+         + W    +  I E  +   L  N    +++  + G+G+  L +   
Sbjct: 191 --RCLRQRFPGGRLYRWEFEKNGQIVEIGVEGPLIANDNGILLEAALAGAGLVWLFEDYT 248

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +D      LVR++ED   P    +  YP   +    L+AF +F
Sbjct: 249 RDFLAEGRLVRVLEDWCAPFEGFHLYYPSRRQMRPALRAFIDF 291


>gi|171319096|ref|ZP_02908219.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095694|gb|EDT40651.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 324

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 135/297 (45%), Gaps = 25/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF+  A+++H+S S+++R+I+ +E  +G+ L +R    +TLTE G    
Sbjct: 16  MRAFVRVVEMGSFSAVAKEMHVSTSTVARKITAIEEALGVALLHRSTHSVTLTEAGHIYL 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+ + 
Sbjct: 76  ERAATLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQLDVR 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D  I   +    + ++ R L        AAP YL  C  P +  +L 
Sbjct: 136 LTDNHNDLVAGGYDLDIHEGENYLDNLVVHR-LSRNDSILCAAPGYLDRCGRPATPDDLP 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGIA 242
            HN + +  + P+   D  W    +   G+ R S L   + ++     +++    G GIA
Sbjct: 195 HHNCLRY--VHPEG--DPRW----ELVRGDARHSVLPAGNLVTDHSELLLEATCAGLGIA 246

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT---------VYFCYPEALKNTGKLKAFRNFI 290
               ++V+D     R+  + + P +          +Y  Y    +++ KL+  + F+
Sbjct: 247 EFEIWLVRDLLASGRL--EAVLPRYRLHNKLTGEHIYIAYLANRRSSAKLRVLKEFL 301


>gi|165976115|ref|YP_001651708.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876216|gb|ABY69264.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 298

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 138/290 (47%), Gaps = 14/290 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE G  
Sbjct: 5   NAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTEAGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+IQ+ 
Sbjct: 65  YYQRCLPILNELKDAEDSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPNIQLN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P ++++
Sbjct: 125 IEFSDRRVDVVAEGYDLVLRI-GTLEDSSIVAKRIARSELVLIASPDYLAKQGTPENLEQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + + +       D +    +     +P    +  N Y +++Q    G GI  LP
Sbjct: 184 LTEHTCLIYENHQQWQFTDGDQKVKI-----KPNAHVISNNGY-ALLQMTKAGQGIVNLP 237

Query: 246 DYIVKDNPNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ K++ N  R++E  I P     S  +   YP     + K+K    F+
Sbjct: 238 LFLAKEDINAGRLIE--ILPQYKQHSIDISVLYPHRRYLSPKVKVLIEFL 285


>gi|126457789|ref|YP_001076608.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167850772|ref|ZP_02476280.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167899377|ref|ZP_02486778.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167923891|ref|ZP_02510982.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|242311693|ref|ZP_04810710.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254193626|ref|ZP_04900058.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254301036|ref|ZP_04968480.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|126231557|gb|ABN94970.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|157811243|gb|EDO88413.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|169650377|gb|EDS83070.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|242134932|gb|EES21335.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 315

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 127/291 (43%), Gaps = 26/291 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L R  +E    +E+T   L  ++        G +RI+ +  +G  +L   +      +P
Sbjct: 67  AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L L N+  D+    AD A+R+ +P Q + LI R +  I +  +A   YL     P
Sbjct: 123 ALTVELALTNRVQDLLRREADIAVRMTRPGQ-TQLIARHIGGIELGLHAHRDYLARRGTP 181

Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               EL +H LI       F   I K    F+  A             L+ +S L+ +  
Sbjct: 182 RDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----------ALRTDSDLAQLAL 230

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
              G+GI      + K +P LVR++         ++    E L+ + + +A
Sbjct: 231 IRCGAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 281


>gi|309781893|ref|ZP_07676626.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308919534|gb|EFP65198.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 331

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+   +A +G+ + AA QL    ++ S  +  +ETE+G +LF R  R +  TE G +
Sbjct: 5   DDLRLLVRIADAGNLSAAARQLGWLPATASAALKRVETELGARLFERTTRSMRPTEAGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    L+     L +   + SG +RIA T DLG+++L+  L  F   +P ++I 
Sbjct: 65  YLGYARQALEALDEGAESLGQDRTELSGPIRIAATSDLGRHILRPWLDAFCDEHPGVRIT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++  D+  +  D A+R    +Q S+L++R L +       AP Y +    P    +
Sbjct: 125 LVLGDRLADLMREDLDFALRYGH-LQDSALVRRPLASHPRVIVGAPSYFRQHGRPAHPSD 183

Query: 186 LDKHNLI 192
           L  H  +
Sbjct: 184 LADHRCL 190


>gi|269961862|ref|ZP_06176219.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833440|gb|EEZ87542.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 297

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 136/287 (47%), Gaps = 14/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  +   GS + AAE L +S++ ++R +  LE  +  +L +R  R L+LT  G +
Sbjct: 5   EAMNVFVTIVERGSLSAAAEHLGMSRTKVTRYLGELEKWMDTRLLHRTTRSLSLTSAGKE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              +  E+    E+      ++ V   G+LRI  +  +  + L   +  F+  +PD+ I 
Sbjct: 65  TLEIARELLALEESLSGIRNQNRVNLKGQLRITASYSIVSSFLIDAITSFIEQWPDVAID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  ++ +++     D AIR+   +  ++++ ++L        A+P Y++    PL+ Q+
Sbjct: 125 IVSTDETVNLVESRIDLAIRITNEL-PANVVAKQLGECRSVICASPKYIEQKGAPLNAQD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L  HN ++F     +    F+       P G+  +S    +  N+   ++   + G+GI+
Sbjct: 184 LGHHNCLSF-SYFGRSEWGFS------GPNGDESVSIKGNISANTPEVLLAAALNGNGIS 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L P   VKD      L++++ +    +  V+  Y    + T  L+AF
Sbjct: 237 LQPFPTVKDLITEGKLIQLLPEWHPKTLGVHAIYGTRKQVTPLLRAF 283


>gi|227819505|ref|YP_002823476.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227338504|gb|ACP22723.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
          Length = 315

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 15/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +RVF  V   G+ + A     ++ +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNVRVFVRVVELGTLSAAGRDQRVTPAVASNRIKELERHMGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   +   +  + + S  P G +RI   + +G+ L+   + EF   YP
Sbjct: 60  EHGRVFYDGAVKILEAVNEAESAIADLSRNPKGAVRITAPLGIGRRLIASGVPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L ++++DI  +  D A RL   ++ S+L  R ++        AP Y      P
Sbjct: 120 DIEVRLRLSDRNVDILSEGIDVAFRL-GILEDSNLRMRGIMNCDRVLCGAPAYFDKRGVP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYC 235
            +  EL  D H+ +      P   E + W  T+  P G  +         +    + Q+ 
Sbjct: 179 GTPDELITDHHDCLLL--RYPGSKE-YYW--TLQTPEGARKFEVGGPYDSDDGDVLTQWA 233

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GI   P + VK   D   LV I+ +       +   YP       K++   +F+
Sbjct: 234 LDGRGIINKPLFEVKQYIDEGTLVPILRETPPLGAQLAAIYPHKRFQDPKVRLIIDFM 291


>gi|193077926|gb|ABO12824.2| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           17978]
          Length = 306

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 118/246 (47%), Gaps = 9/246 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  +   G ++ AA  L + +S +SR+++ LE  +G++L +R  R  ++TE G
Sbjct: 3   DLNDLYYFAKIVEYGGYSAAARALDIPKSKLSRRVALLEERLGVRLLHRSTRQFSVTELG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++    +    E  Q  +  +  +P G +R++    L  + +   L +F+L +P I+
Sbjct: 63  QQYYQYCHAILIDAENAQEFIDLNQSEPRGTIRVSCPPALLHHHMGEFLTKFMLQFPKIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I + + N+++D+  +  D A R+R  P++ S L+ +K VT      A P  L     P +
Sbjct: 123 IYIDVTNRNVDVLNEGIDIAFRVRYPPLKDSGLVMKKFVTSDQCLVAHPRVLSKQPIPQT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
           + EL +   I  G+   + +    W+    +  G         L VN    ++Q  + G 
Sbjct: 183 LDELHQFRTIGLGNAEQQSV----WVLH-HQEHGTTHFQHDPDLIVNDMTGVLQAVIHGL 237

Query: 240 GIALLP 245
           GIA LP
Sbjct: 238 GIAPLP 243


>gi|167901091|ref|ZP_02488296.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 321

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G +
Sbjct: 10  NALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGGR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S  +   +L ++T        +   +  F+  +P+I ++
Sbjct: 70  YAQQVRAALALLADATREVRAS--ERDKRLVVSTLPSFAARWITPRIGPFIERHPEIDLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 128 LRASDSLVDFARDDVDVAIRFGHGVYPGLHVE-PLLDETFFPVCAP-TLNGGMLPETPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 186 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 240

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++A RN++ 
Sbjct: 241 RSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRNWLL 289


>gi|226330938|ref|ZP_03806456.1| hypothetical protein PROPEN_04861 [Proteus penneri ATCC 35198]
 gi|225201733|gb|EEG84087.1| hypothetical protein PROPEN_04861 [Proteus penneri ATCC 35198]
          Length = 295

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 139/291 (47%), Gaps = 25/291 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R F  V  +GSFT AA+ L LS+S +S  I  LETE+ + L  R+ R  +LTE G  
Sbjct: 6   DRIRSFIAVVDTGSFTQAAKYLRLSKSMVSIHIKALETELDVSLLNRNTRRFSLTETGEM 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++    V  +LE T  + +    +  G LR+++T + G++ +   L +F+ L+P ++IQ
Sbjct: 66  LYQDFRLVLSQLEQTLDKARLGQQELQGSLRLSSTTEFGEHYILPLLNQFIQLHPKLKIQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              ++   D+     D AIRL   ++ S+    KL    +    +P  L    +  SI+ 
Sbjct: 126 YAFNSSIEDLINHKLDLAIRL-GTLKDSNYRSTKLADYKISLVISPGLL----QKFSIKT 180

Query: 186 LDKHNLITF--------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           +D   +I +          L P    +FN L +        + +  + N+  ++ +  + 
Sbjct: 181 IDDLKVIPYLANSNLRQSKLSPSL--EFNILLS-----QLSQDAYFETNTISALKKMVLS 233

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKL 283
            +G+A+LP + +        LV +  D+  +T S  + F Y E +    +L
Sbjct: 234 HTGMAILPHWFIHQELLEEKLVVLFPDISLLTQSVNIIFPYSEYIPRKTRL 284


>gi|116696195|ref|YP_841771.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530694|emb|CAJ97041.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 306

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 13/288 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GS + AA  L LS +  S+++  LE E+G++L +R  R L  T +G  L   
Sbjct: 9   LFLRVLDLGSISAAARSLDLSVAVASQRLQRLERELGVRLLHRTTRRLHATPEGVVLAEQ 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   LE     L+++    SG LR+ T+   G+  +   L EFL L+P + + + L 
Sbjct: 69  GRALVDDLEALGTSLRQAGTGVSGTLRVTTSSSFGRLYISPLLPEFLALHPGLTLSVNLT 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+     D AIR+   +  S+L+ R+L        AAP YL+    P + Q+L +H
Sbjct: 129 DNVLDLVSAGFDLAIRI-GVLDDSTLVARRLANNRRLLCAAPDYLRRRGTPRTPQDLARH 187

Query: 190 N-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLP 245
           + L+  G    +  +D   L   D   GE  +     ++ N+   +    + G GIAL  
Sbjct: 188 DCLVLVGS---QGRQDVWRLG--DGAGGEIAVRVRGRIEANTGELLSDAALAGFGIALHS 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV+++ D       +Y   P+      +++AF +F+
Sbjct: 243 TWHVCADLRAGRLVQVLPDYPLADTGIYAVMPQRRLVPPRVRAFVDFL 290


>gi|51595399|ref|YP_069590.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 32953]
 gi|186894422|ref|YP_001871534.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|51588681|emb|CAH20291.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186697448|gb|ACC88077.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
          Length = 297

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 128/274 (46%), Gaps = 7/274 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L+ F VVAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNELQSFLVVARERSFTKAAGKLGVSQSALSHAIKGLEERLNLRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++          LE     L + +   SG +R++      ++LL   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRLADLEQELETLLQLNGTVSGNIRLSAGEHAARSLLWPKLKPFLRKYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  ++I     D  +RL + +    +  +    + M    +P Y      P++ 
Sbjct: 125 VELVVDNGFVNIVDGRFDAGVRLGESVDKDMIAVKIGPEMRMAVVGSPEYFVANAIPVTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L +N     +     G G+A
Sbjct: 185 HELQHHRCINM--RLPTAGGLYHWEFEKEGKPLRVKVEGQLTLNILPERIDAAQSGFGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +P+  ++    +  L++++E    PSF  Y+ Y
Sbjct: 243 CVPEDSIQAFLRSGKLIQVLE-AWCPSFPGYYLY 275


>gi|330992177|ref|ZP_08316125.1| HTH-type transcriptional activator ttdR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760376|gb|EGG76872.1| HTH-type transcriptional activator ttdR [Gluconacetobacter sp.
           SXCC-1]
          Length = 306

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 138/303 (45%), Gaps = 27/303 (8%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS+D    LR F  +  +GS T AA  L  S +++SR+++ +E  +G  L  R+ R   L
Sbjct: 1   MSYDEIGDLRFFSALVDAGSLTAAARGLGTSPAAVSRRLARIEARLGSTLVIRNTRHFGL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +E G   +     +  +++  + E+  S+  P G L I   ++LG+  +   ++ F   +
Sbjct: 61  SETGRLYYERGLAIVAEIDYLEEEISSSTRAPRGTLGIGAPVELGRRQIAPFIEAFSARH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I L L ++ +    D  D  +RL  P    +++ R   T+ +   A+P Y++    
Sbjct: 121 PKLNINLALASEGVYDFSDSLDVVLRLGLPDTPGAVVTRLASTMRVLC-ASPDYIRRRSL 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIG----------EPRISCLQVNSY 228
           P   +EL +H+ +        C+     +A ++R  IG          EPR+S    N+ 
Sbjct: 180 PAHPRELVRHDCL--------CLRRNKTMALLNRWAIGNDTETEVVTVEPRLSA--TNAE 229

Query: 229 LSIMQYCVLGSGIA--LLPD-YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           + I  + + G GIA  LL D Y   +   LVRI  D+      +Y   P        ++A
Sbjct: 230 I-IHDWALSGQGIAYKLLCDVYQDLEEGKLVRIFPDLQGEKIDLYAVLPGRQHTRASVRA 288

Query: 286 FRN 288
           F N
Sbjct: 289 FVN 291


>gi|160877462|ref|YP_001556778.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160862984|gb|ABX51518.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315269664|gb|ADT96517.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 318

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 123/278 (44%), Gaps = 21/278 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA+ GSFT AA+ L ++ S++S+ I  LET +G KL +R  R ++LT  G   
Sbjct: 20  EIRHFVTVAQLGSFTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSY 79

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        L+  Q  L      PSG++R+   +  G+  +   L      YP +++ +
Sbjct: 80  LKDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLSLSQKYPKLELSI 139

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++  D+  D  D A+R+ +   +  L+ R+L        A+P Y      P    +L
Sbjct: 140 TFNDRATDLFNDGIDLAVRVGQLGDTVDLVARRLGEQRRVICASPAYFARLGTPKDKADL 199

Query: 187 DKHNLITFGDLIPKCMEDFNWL--------ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +H  I    L     +   WL           D P+      C       +I+   + G
Sbjct: 200 SQHQCIVGWPL----GQQHRWLLKNEDGIIEAYDIPVRHEIADC------EAILAATLAG 249

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            G+A +P ++V+D      L+ +++++ +    ++  +
Sbjct: 250 VGLAQVPIWLVEDYLKTGELISVLDELASDDTPIHLIW 287


>gi|330820843|ref|YP_004349705.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327372838|gb|AEA64193.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 307

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 17/266 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +++ +F  V R+GSF  AA +L +  ++ISR I  LE+++   L  R  R LTLT  G
Sbjct: 3   DLNEIYLFVEVIRAGSFAEAARRLGMPANTISRHIQALESKMKSPLILRTTRKLTLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   ++    +     E+ +    P G LR+A   D         + EFL  YP + 
Sbjct: 63  QSFYDQCAQNVADIVQASQEVSDIHAAPGGSLRVALPGDFFHVFPVAWITEFLSAYPSVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D+   D+     D A R    ++ ++ ++R + +      AAP YL     P + 
Sbjct: 123 LEFLTDDARADLVAHAVDVAFRPVFALEDNT-VRRVISSAQRRLVAAPVYLAAHGIPRAP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLG 238
            EL +H+ +    L+ +      W   +  P G  R+       +LS     I +  + G
Sbjct: 182 DELSRHDCL----LLSRTPGLEVW--HLSGPQGNARVEV--SGRFLSSSIELIRKTAIEG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMED 261
            GIALLP+  ++   D   LV +++D
Sbjct: 234 LGIALLPEVCMQADIDAGRLVPVLDD 259


>gi|296114682|ref|ZP_06833334.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978778|gb|EFG85504.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 307

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 2/195 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +AR  SF+ AA +L +S S++S  +  LE  +G++L  R  + +TLT  G
Sbjct: 12  DIADLTYFMTIARHRSFSRAAIELGVSASALSHALKALEQRIGVRLLNRTTKSVTLTSAG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L     E +  ++T    L      P+G++R+   ++    LL   + EF+  YPD++
Sbjct: 72  ESLITAIGEPFQVIDTAMEALNRFRDAPAGRIRLNVAVEAANLLLAPVIPEFMDRYPDVE 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++  N+ +D++    D  IR    +    + QR    I      +  YL     P   
Sbjct: 132 LDVVASNRMVDVTDAGFDAGIRYGNTVPEDMIAQRLSADIRWIIVGSASYLDRFGTPEQP 191

Query: 184 QELDKHNLIT--FGD 196
            +L +H  I+   GD
Sbjct: 192 HDLLEHRCISNRLGD 206


>gi|317047946|ref|YP_004115594.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949563|gb|ADU69038.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 302

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D+L+VF  V + GS   AA +L  S   I+R ++ LE   G  L  R  R L  TE G 
Sbjct: 4   FDELQVFVTVIQQGSLAAAARRLQRSPPVITRTLAALEQRFGTTLIERTTRQLAPTEAGW 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L     ++    +        S ++  G LR+   +  G+  +   +  FL  +P+IQ+
Sbjct: 64  QLFEQARQLLTDYQAAMDSAHHSGLQ--GLLRVTAPVQFGRRHVMPLVNAFLARHPEIQL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L +   D+  +  D A+R+ + +Q SS++ R++ T+     A+P YL+    P    
Sbjct: 122 ELVLSDSYQDLIDNGLDIALRIGE-LQDSSMVARRVGTVRSMLIASPAYLQRAGFPPHPS 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            L +H LI          +   W    D R    PR+   +V S L  ++      GI  
Sbjct: 181 ALSEHALIA------GTRQTREWRFARDVRVRITPRLRVNEVESQLLALRSH---QGIGR 231

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L  Y V D+     L+R++ +    +  V          T K++ F +F   +
Sbjct: 232 LLSYQVLDDLRAGTLIRLLPEWEPAALPVQLVTQRVRNMTPKVRQFWDFALTR 284


>gi|150395618|ref|YP_001326085.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027133|gb|ABR59250.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 298

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 111/240 (46%), Gaps = 15/240 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  +GS + A   L  S + IS++I  LE  +G +L  R  R +++TE G   +
Sbjct: 7   LEIFARVVSTGSMSAAGRALGFSAAVISKRIKRLEDRLGTRLLQRTTRQISMTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +      S +  G LRI+     G+  +  +L  F+  +PD+++ ++
Sbjct: 67  DRVLGILAGLEEAEAYASGRSSQVRGTLRISAPTSFGRLHIAPHLTGFMKDHPDLKLHIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   DI  +  D AIR+ + +  SSL+ R+L  +     AAP Y+ +   P  I EL 
Sbjct: 127 LTDDFTDIVAEGFDLAIRIGE-LSDSSLVARRLAPVRRLLCAAPSYVASHGTPKDIGELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H        +P    D NW   ++ P G     P    L  NS   I +  + G+GIAL
Sbjct: 186 SHI------CLPAHNND-NW--KLEGPEGNLSYRPE-GPLVTNSSEIIREAVIAGAGIAL 235


>gi|15964043|ref|NP_384396.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307301188|ref|ZP_07580950.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307321089|ref|ZP_07600494.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15073219|emb|CAC41727.1| Putative transcription regulator [Sinorhizobium meliloti 1021]
 gi|306893261|gb|EFN24042.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306903644|gb|EFN34231.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 296

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 130/299 (43%), Gaps = 29/299 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   VA  GSF  AA++L ++ S++S  +  LE  +G++L  R  R +  TE+G +L
Sbjct: 8   QLAVLSAVAAHGSFRGAAKELGIAPSAVSHAVGSLEASLGVRLLARTTRSVAATEEGKRL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     +        E+  +P+GKLRI         +L   L +FL  YPD  +++
Sbjct: 68  LERLRPALDDIAEALQRAAEARDRPAGKLRITAPRFAADLILAPRLGDFLGRYPDTVLEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++   +I  +  D  IRL + +++  +  +    +     AAP Y +  + P   ++L
Sbjct: 128 ANEDGFTNIVEEGYDAGIRLGESLEADMVAVKVGPELKSAVVAAPSYFERFQRPRHPRDL 187

Query: 187 DKHNLI----TFGDL----IPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCV 236
             H  I    + G +      K  E+     +V+ P  +GE R           I++   
Sbjct: 188 AGHRCIRRRFSNGTIYRWEFEKEGEELT--VSVNGPLILGEDR----------PIIEAAT 235

Query: 237 LGSGIALL-----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+G+A L       Y+ +    LVR++ED   P    +  YP        L+AF +F 
Sbjct: 236 GGAGLAYLFEPRVSGYVAEG--KLVRVLEDWCAPYAGPFLYYPTRRLMRPALRAFIDFF 292


>gi|145639400|ref|ZP_01795005.1| LysR protein [Haemophilus influenzae PittII]
 gi|145271447|gb|EDK11359.1| LysR protein [Haemophilus influenzae PittII]
 gi|309751755|gb|ADO81739.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
          Length = 296

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 133/296 (44%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L  F  +A++ SF  A + L +S S++S  +  LET + ++L  R  R ++LTE G
Sbjct: 3   NFNELNYFLTLAQTQSFVKAGQLLGISSSALSHSMKNLETRLNLRLLNRTTRNVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +Y  +      L +    PSG +RI       + +L   LK  L  YP I+
Sbjct: 63  QQLFDQLFPLYQAINQEVDALNDFLNTPSGLIRINAPSMAAEAVLYPKLKPILNQYPKIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++D++  DI  +  D  +RL   +    +       + M   A+  YL     P +I
Sbjct: 123 LEIVVDDRWADIVKEGFDMGVRLGNKVAKEMIAVPISAPLKMALVASHDYLAQYGSPKNI 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L +H LI    L  +   +  W     + +    P+ S   +N++L  +Q    G GI
Sbjct: 183 DDLQQHRLIGI-KLSAEHGTEMQWEFKYKKELITFTPK-SQFSINNHLR-LQAVSDGLGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP  I  D   +  LV ++ +       +Y  YP    ++   K   + + LKA
Sbjct: 240 TWLPHIIAADALHSGQLVELLPEYAMTYEPLYLYYPSRCGHSNVFKLIVDALKLKA 295


>gi|330502513|ref|YP_004379382.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328916799|gb|AEB57630.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 307

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 7/189 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +G F  AA++   S SS+S  I  LE E+G++L  R  RGLT TE G++L + 
Sbjct: 11  LFAAVVEAGGFRAAAQRRGTSASSLSDCIRRLEKELGVRLLNRTTRGLTPTEIGARLLQR 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 ++ T   +LQE    P G LR+     + +++L   L  FL  YP I +++ +D
Sbjct: 71  LRPALDEINTALNDLQEDPEHPVGSLRLHVPGVIARHVLPALLDGFLARYPGIALEVNMD 130

Query: 130 NKDIDISMDYADCAIR----LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           N  ID+     D  IR    L K + +  +  R+   +   A AAP YL+    P    E
Sbjct: 131 NTFIDVIGAGYDAGIRYEESLAKDMIAIPIGPRRQCFM---AVAAPSYLQRHGTPQHPGE 187

Query: 186 LDKHNLITF 194
           L++H L+ +
Sbjct: 188 LNEHRLLGY 196


>gi|260464399|ref|ZP_05812590.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029869|gb|EEW31154.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 300

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 127/288 (44%), Gaps = 6/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF    R  SFT A  +L ++Q+++S  + GLE ++G KLF R  R + LTE G + H  
Sbjct: 16  VFEAAGRLSSFTAAGRELGMTQAAVSYAVRGLEEKLGAKLFQRRHRQVLLTEAGERFHAD 75

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S     +  +  +L+  +    G + +A +   G   +   L++F    P + +++   
Sbjct: 76  VSLGLSHIRKSAEDLRLQAT--GGHVTLAASTAFGSFWMMPRLQQFRDELPGVDLRIQTA 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++D+DI  +     +R   P          L    +   A P+YL     P ++ EL  H
Sbjct: 134 DRDLDIIAEGIPLGVRGGVPRDWPDYHSLSLADEEIFPVAGPNYLAKFGLPETVAELAMH 193

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            LI   +   +      W A+    +       L++N Y  ++Q  + G GI+L   ++V
Sbjct: 194 RLIHLEEPYREAPNWDEWFASAGTSLRNAE-RGLRINDYALVIQAVMEGQGISLGWRHLV 252

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +    +  LV + + V+      +  +P+  + +   +  R+++  +A
Sbjct: 253 ERLVASGLLVPVTDHVLRTGIGFHVIWPKNRELSDNARKVRDWLVAQA 300


>gi|239813674|ref|YP_002942584.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800251|gb|ACS17318.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 299

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 127/285 (44%), Gaps = 13/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F VV  +G F  AA +L +S S ++R +S LE  +G++L  R  R + +TE G    
Sbjct: 7   MATFLVVVETGGFASAARRLKVSPSVVTRAVSELEERLGVRLLTRTTRSVRVTEAGMSYA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E        +   P G++ + ++++ G   +    + +L L+P+++I   
Sbjct: 67  ESCRRILVDIEEADSAAAGARTSPRGQITVTSSVNFGCMYVSPIARNYLSLFPEVEINCW 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D AIR+ + +  SSL   K+  +     A+P YL+    P   Q+L 
Sbjct: 127 FVDRVVNLVDEGVDVAIRIGE-LPDSSLQAIKVGQVREVLCASPTYLRQHGTPKRPQDLS 185

Query: 188 KHNLITFGDLIPKC---MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +H +I    + P       D +  AT+     +PR +     +     +    G GI  L
Sbjct: 186 QHVVIAATGVTPTPEWRFRDSSKSATIRL---QPRFTTTMNEAA---AECATAGFGITRL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P Y +       +L  ++ED   P+  ++  + E      K++ F
Sbjct: 240 PLYQIARGVKEGSLALVLEDFERPAVPIHVVHREGRHGARKVRTF 284


>gi|167892595|ref|ZP_02479997.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167909311|ref|ZP_02496402.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167917344|ref|ZP_02504435.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|254295964|ref|ZP_04963421.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157805884|gb|EDO83054.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 321

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G +
Sbjct: 10  NALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGGR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S  +   +L ++T        +   +  F+  +P+I ++
Sbjct: 70  YAQQVRAALALLADATREVRAS--ERDKRLVVSTLPSFAARWITPRIGPFIERHPEIDLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 128 LRASDSLVDFARDDVDVAIRFGHGVYPGLHVE-PLLDETFFPVCAP-TLNGGMLPETPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 186 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 240

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++A RN++ 
Sbjct: 241 RSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRNWLL 289


>gi|319779900|ref|YP_004139376.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317165788|gb|ADV09326.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 303

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 137/298 (45%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+F   +L+ F  VA  G+ + AA+ L +SQSS++  I  LE+++G++LF RH RGL +T
Sbjct: 1   MAFTIRQLQFFIAVAEQGTVSGAAQNLSISQSSVTEAIKELESDLGVELFERHPRGLNIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +  R  +++   +   +          +G+L++  T  +   +L   L  +   YP
Sbjct: 61  HKGHQFLRHATKILADVSDARRSFSGEQAVAAGRLQLGVTSLVAGYVLSDLLARYRRAYP 120

Query: 121 DIQIQLILDNKDIDISM---DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYLK 175
            +++  I DN D    +      D A+ +   ++  + +Q +++ +  +    P  H L 
Sbjct: 121 GVEVSAIEDNGDYLEHLLIGGKLDIAVMVTSNLRDRTALQSEILEVSAYRLWLPLGHPLV 180

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
              + +SI ++    LI     + +  E+   L T    IG       +  S  ++    
Sbjct: 181 GA-DIISIGDIASETLIML--TVDEIEENTGKLLTA---IGAKPHVAFRTRSVEAVRSLV 234

Query: 236 VLGSGIALLPDYIVKD-NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G+G+ALLPD + +  +    RI    I+ S  V        + +G  +A R+FI L
Sbjct: 235 ATGAGVALLPDLVYRPWSLEGDRIESRDISGSLPVVQVGMVWRRGSGLPQAARDFIGL 292


>gi|300721867|ref|YP_003711145.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
 gi|297628362|emb|CBJ88927.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
          Length = 311

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 115/250 (46%), Gaps = 20/250 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF     +GSF+  A  + ++ SS+SR I  LE ++   L  R  R L +TE G +++
Sbjct: 14  LLVFIKTVETGSFSATARAMSMTPSSVSRMIDRLEAQLNQHLLIRTTRMLQVTECGQEIY 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    V    +      +  S  PSG LRI     LG+ LL   L  FL+ YPDI ++L+
Sbjct: 74  RYALNVISATDDLFARAENFSDVPSGILRITAPNTLGKILLTVFLPVFLINYPDINVELL 133

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-PLSIQEL 186
           L +  ++I+ D  D A+R+ +     +++ R L+ I      + +Y K   E P  + E 
Sbjct: 134 LTDNIVNIAHDQFDLALRITES-PPENMVARALMPIEYVFVCSANYHKELPEDPFLLSE- 191

Query: 187 DKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             HN+         G  I K  E    +    R         L +N+  +++   + G G
Sbjct: 192 --HNIFFPEERQIHGGWIFKNKERTEPIFLTPR---------LLINNSDAMLDAILQGVG 240

Query: 241 IALLPDYIVK 250
           IAL+P +I  
Sbjct: 241 IALMPTFIAN 250


>gi|222106868|ref|YP_002547659.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221738047|gb|ACM38943.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 305

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 123/285 (43%), Gaps = 20/285 (7%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           VAR GSF+ AA +L+L+Q +ISRQI  LE ++G +LF R+ RG+  T +G   HR     
Sbjct: 22  VARLGSFSAAASELNLTQGAISRQIQTLEEQLGTQLFLRNGRGVVPTPRGENFHRAVQSA 81

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              ++   +E    S      L IA     G   L   +  F+  +P I +         
Sbjct: 82  LSLIQDASLEAMTGSQ--GNALNIAILPTFGTRWLLPRISSFVAAHPHINLNFATRIGIF 139

Query: 134 DISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           D   +  D AI + KP       + L+   +  +   A+   H++K      +  +L   
Sbjct: 140 DFDAEQLDAAIHIGKPNWPRATCTFLMDETVAPVCSPAFLVSHHIK------ADSDLADL 193

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            LI    +  + +   +W  ++      PR + +    ++++ Q C+ G G+AL+P +++
Sbjct: 194 PLI---QMKSRPLAWDHWFDSLGI-TATPR-AAMSFEQFMNVAQACIAGLGVALMPLFLI 248

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
               ++  LV   +  +      Y   P+    +  L AF  ++ 
Sbjct: 249 GPELESGQLVLASQHSVNSQSNYYLVSPDNRPLSKPLAAFSQWLL 293


>gi|148560165|ref|YP_001258388.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148371422|gb|ABQ61401.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840]
          Length = 383

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 3/189 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT TE G  
Sbjct: 84  DNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRV 143

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI+++
Sbjct: 144 FYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEVR 203

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P S + 
Sbjct: 204 LRLSDHEVDIMSEGVDVAFKLGV-LENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPEA 262

Query: 186 L--DKHNLI 192
           L  D+H+ +
Sbjct: 263 LLSDRHHCL 271


>gi|104780507|ref|YP_607005.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95109494|emb|CAK14195.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 305

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 136/290 (46%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V+   SFT A + L L +S++S Q+  LE  +G +LF R  R + +T+ G+ L+
Sbjct: 7   LRTFVRVSELCSFTQAGDSLGLPRSTVSEQVRALENLLGTRLFNRTTRRVQVTQDGALLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++   ++  +   +    + +G+LRI     + + ++   L  FL  +P +++++ 
Sbjct: 67  ERSKDLLSGMDEIESLFRTDDAELAGRLRIDLPTMMARRVIVPALPGFLERFPRLEVEIS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   +    ++ R +  + M   A+P YL+    P S+ +L 
Sbjct: 127 CTDRQVDLLREGFDCVMRI-GTLGDLDVVARPVGRLSMCNCASPAYLERHGIPRSLSDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYCVLGSGIAL 243
            H+L+ +   +    + F +        GE R   +     VN+  +    C+ G G+  
Sbjct: 186 DHSLVHYVRTLGARSQGFEYEQD-----GELRFQAMGGVVTVNNAEAYSAACLAGLGLIQ 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P   V ++     LV ++E     +  V   Y        +++AF N++
Sbjct: 241 VPVVGVDEHLRRGELVSVLEPWQAQAMPVSLLYARQRHVPRRVQAFMNWL 290


>gi|52425152|ref|YP_088289.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307204|gb|AAU37704.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 297

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 132/288 (45%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  +  S SFT AA   ++S +  S+ ++ LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISVFCRIIESQSFTQAAALENISVAMASKLVAQLEEHLKTRLLQRTTRKIVPTEAGLV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  +L+     + + S    G L ++  +D G   +   L  F+   P++ ++
Sbjct: 65  YYQRCQPILLELKEADSSISDLSTSLQGNLVVSVPMDFGLKFITPTLPAFISANPNLHVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D A+R+   +Q S+L+ +KL T  MH  A+  YL+    P   ++
Sbjct: 125 MEFSDRRVDLMAEGYDLALRI-GSLQDSTLVAKKLATTSMHFAASAEYLRRYGTPRKPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + +  +  +   +F     + R     ++ C   N+ L+++Q      GI   P
Sbjct: 184 LQYHQCLLYKAIGNQIYWEFANKGKIQRVKMRSKMVC---NNGLTLVQLAKADLGIINSP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++V++   +  L+ ++ +       ++  YP       K+KAF  F+
Sbjct: 241 RFLVEEELASGELIEVLPEFKQQLLDIHAVYPHRRHLAAKVKAFVEFL 288


>gi|313499704|gb|ADR61070.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 309

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 125/269 (46%), Gaps = 22/269 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF VVAR  +F  AAE+L ++Q+++++QI GLE  + ++LF R  RGL LT+ G  
Sbjct: 24  NALRVFEVVARHLNFRLAAEELGVTQAAVAQQIRGLEASLNLRLFERLPRGLALTDAGLG 83

Query: 66  LHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               +  + + L    I+     ++P +  L ++ T       L   L  F   +PDI +
Sbjct: 84  ---YSGSIRNAL--AMIDEATRLLRPQASHLTVSVTPTFASKWLIPRLGSFAHSHPDIDL 138

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++  ++    + D  D A+R  KP   + L    L+   + A A+P   + C+ P S +
Sbjct: 139 RVLATDRLSHFNTDGVDLAVRYGKPDIGAGLNSELLMEQRLVAVASPTLFEACKAPTSFE 198

Query: 185 ELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L    L+    D  P+      +LA +    G+     L+ N     +   + G GIAL
Sbjct: 199 QLQAFTLLHDAHDFWPR------FLAQLFPQHGQATARNLRFNQTSLAIDAAISGQGIAL 252

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFC 272
                     +L  +++D++    T  F 
Sbjct: 253 ---------ASLAFVIDDIVAGRLTQVFA 272


>gi|269102278|ref|ZP_06154975.1| D-serine dehydratase transcriptional activator [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162176|gb|EEZ40672.1| D-serine dehydratase transcriptional activator [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 310

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 8/179 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F + A   SFT AAE L L+QS++S +I  LE  +G+KLF R  R LTLT +G  L 
Sbjct: 14  LHCFLIAADQMSFTRAAETLCLTQSAVSHKIKNLEEILGVKLFIRQPRKLTLTPEGQHLK 73

Query: 68  RVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            V +   H      +E+++  S + SG+L ++      Q  L   LK FL  YP +++ L
Sbjct: 74  EVLA---HNFGDIALEIRDLKSTELSGELNVSVPPTFAQRWLVPRLKGFLDKYPSVRVHL 130

Query: 127 ILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
              N  +D   +  DCAI         + +  L+   ++ +  H YA  H L +  E L
Sbjct: 131 RTRNDLVDFQTESFDCAIYFGHGKYAGLHAVKLMDETMLPVCSHEYAVEHNLYHHPENL 189


>gi|255587258|ref|XP_002534204.1| penicillin-binding protein, putative [Ricinus communis]
 gi|223525731|gb|EEF28198.1| penicillin-binding protein, putative [Ricinus communis]
          Length = 606

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 133/288 (46%), Gaps = 6/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VAR GSFT AAE L ++ +S S  +  LE  + + L  R  R + LT +G++ +
Sbjct: 280 MSVFTHVARMGSFTAAAEALGVTAASTSTVVRQLEARLNVTLLQRSTRSMRLTTEGTQYY 339

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   ++  +  L+ SSV P G++ I    ++   ++   + +FL  YP + +++ 
Sbjct: 340 EHCLRVLGDIDDMERHLKGSSVIPRGRISINVAEEIAHTIVP-PIGDFLARYPTMDLRIG 398

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++   + I     DCAI +   + +SSL  R + +      A+P YL+    P S+ +L 
Sbjct: 399 IEGDPLGIIDKGVDCAIVVGN-LANSSLRSRTVGSCQAATVASPDYLRAHGVPRSVLDLH 457

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H +I +          F + A  D  I    +  + V+S  +++ Y V G G+A L   
Sbjct: 458 HHTVIHYSLKPFGSARYFRFNADGDD-IQLKLVEKICVSSTQAMLNYAVDGVGVAQLCRL 516

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I   +     LV I++        V   Y +       ++AF +++ L
Sbjct: 517 IAARDLSAGRLVEILDQCRPDPLPVSVLYSDRRHMPMSVRAFIDWVVL 564


>gi|149922957|ref|ZP_01911377.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149816208|gb|EDM75715.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 324

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 15/291 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D+LR F  VA++GSF  AA++L   ++++ R+++ LE   G+ LF R   G++LT+ 
Sbjct: 1   MDLDELRAFLAVAKTGSFLAAAQELRQPRATLRRRVNALEARAGVTLFERSNSGVSLTQP 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L     E+  +       L+E   +PSG+LR+          L   ++   + YP +
Sbjct: 61  GALLADNGRELLQQAGALLSSLREVDSEPSGELRVVLPEGAPVTGLTPLIQVMRMRYPKL 120

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +   +  +    D+   A   +R P    +     L  + M   A+  YL+    P 
Sbjct: 121 RATIHFSDDPLRAQDDFHLAAHFGVRTPKGPWTAF--PLARMRMGLLASADYLRRNGTPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV-LGSG 240
            +++L +H L+++  L P   ED       +    E   +    NS  S+++ C   G G
Sbjct: 179 RVEDLAEHTLMSW--LCPS--EDPGRWPCANGHYCEVEPAMTSANS--SLLRRCAHAGMG 232

Query: 241 IALLPDYIVKDNPN-----LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA++PD  + D  N     LV ++ + +  +  +     EAL ++ +L A 
Sbjct: 233 IAMVPDVGMPDVGNEDSEALVPVLPEQVGRAHDLRLVIHEALASSPRLSAI 283


>gi|163857972|ref|YP_001632270.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261700|emb|CAP44002.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 302

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  +   GSFT AAE L+L +++ +  I  +E+ +G +L  R  R +  T  G   +
Sbjct: 7   LQLFNRIVELGSFTEAAELLNLPRATATHAIKQMESRLGTRLLDRTTRQVKPTLDGQAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V   LE  +  L      P G LR+         +L  ++ EF   YP+I + L 
Sbjct: 67  ERSRRVLADLEDAEASLSTHVANPHGTLRLDVHGVHASMILLPHINEFRERYPNIDVILS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  +P + SSL+ RKL  +     A+P YLK    P    +L+
Sbjct: 127 SGDRLVDLVKEGIDCVVRAGQP-RDSSLVARKLADLPEIICASPEYLKRHGTPQHPGDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H  + F          F+ +   TV +      IS      Y S     + G G+  +P
Sbjct: 186 QHQAVGFFSRGSSHRYPFSVIVDGTVQQFKASGWISVSDAECYTSA---ALAGCGLIQVP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + ++       LV+++ +   P+  +   YP   + + +++ F +++
Sbjct: 243 RFRLEPALQAGRLVQVLPEWQCPTLPISALYPFHRQLSPRVRVFVDWV 290


>gi|114570062|ref|YP_756742.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114340524|gb|ABI65804.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 307

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 11/199 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW+++R        GSF+ AA  L  +Q ++SRQI+ LE+++G+ LF R+ R    T
Sbjct: 6   IAFDWNQIRALLATIEEGSFSGAARALGQTQPTLSRQIAALESDLGVTLFERNRRATVPT 65

Query: 61  EQGSKLH-----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
             G+ L      R   E   ++  T    Q S+++  G++ +  T  +    L   +K  
Sbjct: 66  --GAALELVEHVRSMGEAAQRISLTA-SGQSSAIE--GRVTVTATNIMASYYLPPIIKHI 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
               P I++++I  N+  D+    AD AIR  +P Q   LI R +     H YA P YL 
Sbjct: 121 RETAPGIRLEIIASNELQDLQKREADIAIRHARPEQ-PDLIARLVGETTGHLYAHPDYLD 179

Query: 176 NCREPLSIQELDKHNLITF 194
               P  I+++++ + I F
Sbjct: 180 RVGRPTCIEDINRLDFIGF 198


>gi|325526602|gb|EGD04147.1| transcriptional regulator [Burkholderia sp. TJI49]
          Length = 274

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 13/258 (5%)

Query: 41  LETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATT 100
           LE ++ +KLF R  R +TLTE G +  +    +   ++     +   +  PSG LR+ + 
Sbjct: 5   LENDLKVKLFTRTTRCVTLTEAGIEYAKHVEGILRSIDDAHRSISSITSAPSGTLRVHSR 64

Query: 101 IDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160
           +  G  +L   + EF  LYP IQI+L L     D++ D  D   R+  PI+ S + +R L
Sbjct: 65  VMFGLGVLPTLITEFSKLYPSIQIELTLSEAPSDLNKDQIDIDFRIAPPIE-SGIKRRIL 123

Query: 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI 220
                H   +P Y        + +EL  H  I +   +P     ++W    D    E   
Sbjct: 124 FRSERHLVVSPGYFIGRSSVTAPEELKNHQCIAYS--MPGS--GYSWRFRKDGAETEVHF 179

Query: 221 SCLQV-NSYLSIMQYCVLGSGIALLPDYIV-KD--NPNLVRIMED--VITPSFT--VYFC 272
               V N+ ++++++  +G GI LL DY V KD  +  LVR++ +  V   SF   +Y  
Sbjct: 180 QPRHVTNNGIALLEFARMGEGIVLLDDYTVHKDLISGKLVRLLPEYQVTNSSFEDGMYAT 239

Query: 273 YPEALKNTGKLKAFRNFI 290
             ++     K++ F +F+
Sbjct: 240 IVDSPAIPTKIRLFLDFV 257


>gi|295095809|emb|CBK84899.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 299

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 18/244 (7%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E   G +L  R  R LTLT  G K+ +
Sbjct: 12  QVYNRICELGSLSAAARALGISRPMVSRYLEQMEKWAGARLVNRSTRKLTLTAAGEKVLQ 71

Query: 69  VTSEVYHKLETTQIELQESSVK--PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            T      L     E+++ SVK  PSG LR+A        ++   L + L  YP ++I+L
Sbjct: 72  KT----RTLSQISQEIEDQSVKDLPSGTLRVACAHFTAMQIIAPVLPDLLQRYPQLRIEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            ++N  I +  +  D AIR+    +   +I R+L        A+PHYL +   P  +++L
Sbjct: 128 DVNNHPISLVGERIDVAIRITDNPE-PGMIARRLGECRSVLCASPHYLASRGVPEQLEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI----MQYCVLGSGIA 242
            +HN + +        + + +L     P GEP  + +  N   SI    M+  +   GIA
Sbjct: 187 ARHNCLHYSFF---AGQSWRFLT----PEGEPITTAVSGNLSASISSLLMEAAINHCGIA 239

Query: 243 LLPD 246
           +LP+
Sbjct: 240 MLPE 243


>gi|9909830|emb|CAC04521.1| AmpR transcriptional activator [Ochrobactrum anthropi]
          Length = 291

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 131/292 (44%), Gaps = 22/292 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L ++Q+++S Q+  LET + + LF R  RGL LT +G  
Sbjct: 9   NSLRAFEASARHLSFTKAAIELCVTQAAVSHQVKSLETRLNVTLFERLPRGLMLTSEGET 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     + + ++  T    +    +    LR+     L    L   L++F   YP I ++
Sbjct: 69  LLPTLKDAFDRIAGTLERFEAGHYRE--ILRVGAVGTLAVGWLLPRLRDFQNRYPFIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           L  +N  +DI+ +  D AIR        I ++ L++  L  + +     P   +  R P+
Sbjct: 127 LSTNNNRVDIAAEGLDYAIRFGSGAWHGIDATRLLEAPLSPLCI-----PELARELRTPV 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H L+       +  E   W          P    +  +S L++M+  + G+GI
Sbjct: 182 ---DLARHTLLRSY----RADEWTQWFVAAGVTGDMPLPRSIMFDSSLAMMEAAMQGAGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL P  +      +  +V+  E  +T   + +    ++   T  + AFR+++
Sbjct: 235 ALAPPLMFSRQLLSETIVQPFETTVTMG-SYWLTRLQSRTETQAMAAFRDWL 285


>gi|172063716|ref|YP_001811367.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996233|gb|ACB67151.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 299

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 118/285 (41%), Gaps = 6/285 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 3   IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 63  KAALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPMLAQLRRDHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+     D A+R+  P Q  +L+ R++  I +  YA   YL     P
Sbjct: 123 GLVIELVPTDRIQDVLNREVDIAVRMAPPAQ-DALVARRVGEIDIGLYARDDYLARNGTP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H LI F  + P     F   A    P  +     L+ +S L+ +     G G
Sbjct: 182 STTGELAHHALIGFDTVTP-----FIRSAGRGMPSWKRDAFALRTDSNLAQLAMIRAGYG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           I    + + K +  LVR++ D  T     +    E L+ + + +A
Sbjct: 237 IGFCQNGLAKRDARLVRVLPDGPTMKLETWVVMHEDLRTSPRCRA 281


>gi|160899839|ref|YP_001565421.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365423|gb|ABX37036.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 298

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 110/243 (45%), Gaps = 6/243 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  + R+ S   AA  L + Q+++ R+++ LE E+G KLF R   G  LT  
Sbjct: 1   MNWDDTRIFLALTRTPSLRAAARSLGVDQATVGRRLNALEAELGSKLFLRARDGYLLTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +       +  ++     P+G +R+ +T  +    L   ++     +P I
Sbjct: 61  GEAALGAARRMEGAALDLRTRIEGLDDSPAGLVRVTSTDSIATEFLLPAIERLQQRWPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L +    +++    AD A R  +P ++  L+ R++V   +  +A+  Y+    +P +
Sbjct: 121 RVDLEVSTHMLNLGRRQADIAFRNVRP-EAPELVVRRVVAWPVGLFASAAYVARFGQPSA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H+L+ +G      +E       VD P    RI  +  NS L + +    G G+ 
Sbjct: 180 EDELRGHHLVVYGPF----LEQRPVPTMVDVPARHARI-AMAANSSLLVRKAVAAGIGLG 234

Query: 243 LLP 245
            +P
Sbjct: 235 EMP 237


>gi|78060818|ref|YP_367393.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965368|gb|ABB06749.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 317

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 121/287 (42%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AAE+L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 32  LLVFEAAARHESYTRAAEELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 91

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 92  AELSGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHDFYTAHPGVTVHLH 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                +D   D  D AI +        L   +L    + A A P      R     +   
Sbjct: 151 SRIGGVDFLNDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIAPPDTGSASRRKADARTPA 209

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
                T   +         W +       + RI    ++ S+L  +Q    G GI L+P 
Sbjct: 210 WAAKQTLLGVTSNQQAWAEWFSHYRLDHRQMRIGPSFELTSHL--IQAVRAGMGIGLVPK 267

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +V+D  + N +  + D IT   + Y  YP   +    L AFR ++ 
Sbjct: 268 VLVEDELSRNELVSIGDAITSQRSYYLVYPPGNETLPSLVAFREWLL 314


>gi|307543878|ref|YP_003896357.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307215902|emb|CBV41172.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 295

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 127/289 (43%), Gaps = 17/289 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +   V  SG F+ AA +L +  + +SR I  LE E+   L  R  R + LTE+GS+
Sbjct: 6   EDLELLLAVVDSGGFSAAAGRLGVPVARVSRAIQRLERELAAPLLNRTTRSVALTEEGSE 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E    L   +  L     +PSG+LR+        + L   + EF   YP IQ++
Sbjct: 66  FVARVREGLEALNAAEEGLVTRREQPSGRLRVDAASPFVLHQLVPLVAEFRERYPSIQLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  I++     D AIR+   ++ S+L  R L    ++  A+P YL     P +  E
Sbjct: 126 LSASDDIINLLEQRTDVAIRI-GALEDSTLHARPLGRSPLYLVASPAYLDTHGRPTAPAE 184

Query: 186 LDKHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  + F  + P  +  +    LA+ D          L  +S   +   C+ G GIA 
Sbjct: 185 LGRHERLGF--IGPATLNRWPIEGLASWD------ITPTLAASSGEVVRHLCLAGHGIAY 236

Query: 244 LPDYIVK---DNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAF 286
           L +++++   D   L  +++D      P   V   Y      + +++AF
Sbjct: 237 LSNFMIRADIDAGRLETVLDDYTLHGGPRERVQAVYYRNTAMSSRIQAF 285


>gi|293390878|ref|ZP_06635212.1| LysR protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951412|gb|EFE01531.1| LysR protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 296

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 128/279 (45%), Gaps = 8/279 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V ++GSF  AA +L ++ S++S+ +  LE  +G++L  R  R ++ T+ G KL    
Sbjct: 14  FIQVVQAGSFAKAANKLGVTSSALSQNVKSLEKSLGLRLLNRTTRSISPTDAGEKLLAQI 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           +  +H +     +L +    P G +RI T+      LL   LK  +  YP+++I+++++N
Sbjct: 74  TPHFHAIVGGLNQLDDWRNSPLGTIRINTSEVAANLLLYPKLKTLMQRYPELKIEMVVEN 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +DI     D  +RL   +    +  +    + M   A+P YL+      +I +L  H 
Sbjct: 134 RWVDIVEQGFDMGVRLGYALYKDMIAVKISDPVRMAVVASPDYLRGKPSVQAIADLPAHL 193

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           LI            + +    +R   +P      VN+ L   Q  + G GIA LP  +V+
Sbjct: 194 LIGLRLSNQHGEAHWEFQHKGERITFQPE-PHFSVNNGLR-HQAALDGLGIAWLPKIVVE 251

Query: 251 DN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +     LV ++++       +Y  YP      G  +AF
Sbjct: 252 KDLEAGRLVELLDEYAMEYEPLYLYYP---NRQGHSRAF 287


>gi|218461976|ref|ZP_03502067.1| LysR family transcriptional regulator [Rhizobium etli Kim 5]
          Length = 308

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 2/199 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA +GSF+ AA  L ++Q ++SRQ++ LE+    +L +R   GL+LT +G ++ 
Sbjct: 7   LRTFQRVAETGSFSAAAHDLDVTQPAVSRQVASLESHFNTRLLHRTTSGLSLTAEGERML 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   +   +E        +    SGK+R++    LG  L +  L + L  +P + ++LI
Sbjct: 67  PMALRILEAVEELGDAAGSNGATASGKVRLSVPAPLGLYLSE-RLGDLLAGHPKLSVELI 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +  D+  +  D  +RL   +  SSL+ R++        A+P YL     P + +++ 
Sbjct: 126 FREQSSDMIEERLDLEVRLGS-VADSSLVCRRIGWTTAFLVASPAYLARKAAPRAPKDIR 184

Query: 188 KHNLITFGDLIPKCMEDFN 206
            H  + +      C   F+
Sbjct: 185 DHECLCYDRAGDTCTWSFS 203


>gi|269140470|ref|YP_003297171.1| putative DNA-binding transcriptional regulator [Edwardsiella tarda
           EIB202]
 gi|267986131|gb|ACY85960.1| putative DNA-binding transcriptional regulator [Edwardsiella tarda
           EIB202]
 gi|304560262|gb|ADM42926.1| Transcriptional regulator [Edwardsiella tarda FL6-60]
          Length = 306

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 4/244 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSFT AA QL +S SSIS+ I+ LE  + I+L  R  R ++LTE G   +
Sbjct: 7   MAIFARVVECGSFTGAAAQLAMSVSSISQTITKLEHALQIRLLNRSTRRISLTEAGRIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++  + +    +L   +  PSG LRI  +  + QN+L       L  YP + + L+
Sbjct: 67  QGCRKMLQEAQEVHEQLYAYNNTPSGTLRIGCSATMAQNVLAPISARMLAEYPGLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  +R    +Q S L  R L  + M   AA  YL+    P S  EL 
Sbjct: 127 TGVPAPDLIADGLDLVVRAGD-LQDSRLFCRALGAMPMVICAAKCYLQRHGTPESPAELG 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            ++ + F     +   D   +A     +          N   +++ +   G+GI  LP  
Sbjct: 186 SYSWLNFSG---QPAHDLTLIAPEGESLRLMPSGRFHTNDAQTLLSWLNAGAGITYLPLM 242

Query: 248 IVKD 251
            V D
Sbjct: 243 WVID 246


>gi|221065600|ref|ZP_03541705.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710623|gb|EED65991.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 324

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 135/285 (47%), Gaps = 26/285 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F +VA+ GSF+ AA    +S S++S+ ++ LET +G++L  R  R L LT +G +L
Sbjct: 20  ELQTFVLVAQQGSFSAAARLREVSPSAVSKIVARLETRLGVQLLRRSTRRLELTAEGEQL 79

Query: 67  HRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                E   +L    + L ESSV    +P+G +RI  +   G  LL   +   +  +P +
Sbjct: 80  ----LEQGRQLLADWLAL-ESSVTRQGQPTGVVRINASSSTGNRLLVPLVGPLMRTWPGL 134

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L   +  +D+    AD A+R  + + SS ++ RKL        A+P YL+    P  
Sbjct: 135 QLDLSFTDHVVDLIAARADIALRWGE-LPSSDMVARKLGHTRQVIVASPDYLQRFGRPAH 193

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             EL  H  +  G   P+ +  + ++     V   +GE     L+VN   ++      G+
Sbjct: 194 PDELSGH--VRIGWNYPRAIPHWPFVVAGKAVTVSMGE----VLRVNDGEAMANLAKAGA 247

Query: 240 GIALLPDYIVKDNPNLVR---IMEDV----ITPSFTVYFCYPEAL 277
           G+A L  Y   ++ +  R   ++ED     + P   VY   P  L
Sbjct: 248 GLARLSLYHAWEDLHAGRLQALLEDFNPGDLQPIHAVYVGKPGQL 292


>gi|78062987|ref|YP_372895.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970872|gb|ABB12251.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 304

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 129/295 (43%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LT+ G +
Sbjct: 5   DRFAVFRAVVEAGSFTAAATALNQARAAVSFNVKQLEAELGVTLLTRTTRRVELTDAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    V  + E    E++       G LR+ +T++    +L   L  F   +P ++++
Sbjct: 65  FYQRCLRVLEEAEGAIDEVRGEHGGMQGILRVTSTVEYAARVLAPMLHAFTARHPALRVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRK-------PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L       D+  D  D AIRL +       P + + L    ++ +      A   L    
Sbjct: 125 LETHTSQADLVRDRFDVAIRLGRHEHFRDLPYRGACLATYDVLAVMAPGLPAKAGLPPPA 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P  +  L +        +    + D        RP  +P I    V++   + +    G
Sbjct: 185 SPGDLARLPQLGHSRLERIAEWTLTDPAGNEHAFRPATKPHIV---VDNASVLSELARQG 241

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           SG+ALLP+++V+D+ +   LV  +     P   VY  Y        K++A+ +F+
Sbjct: 242 SGVALLPEWLVRDDLDSGALVDALPAYRFPQQNVYALYVATRHVPQKVRAWVDFM 296


>gi|330901021|gb|EGH32440.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 266

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 116/269 (43%), Gaps = 13/269 (4%)

Query: 37  QISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLR 96
            +  LE  +G+ L  R  R   LTE G+  +    EV   +  ++   +++   P+G LR
Sbjct: 1   HLRALEERLGVSLLQRTTRRQRLTEFGTAYYERCLEVLGLVAESEQLAEQAHGDPTGTLR 60

Query: 97  IATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI 156
           I   +  G  +L   L EF   +P++++ L+L N+ +D+  +  D AIRL    +SS LI
Sbjct: 61  ITAPLTFGSEVLAPALVEFSRRFPEVKLDLVLTNQRLDMIDNGFDVAIRLGNIPESSPLI 120

Query: 157 QRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCME----DFNWLAT-V 211
            R L    +   AAP YL     P   ++L +HN + F    P   E       W  T  
Sbjct: 121 ARPLQDYTLTICAAPDYLARHGTPTHPEDLRQHNCLAFA--YPAGDEWRTAGTQWRMTGA 178

Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFT 268
           D  +       +  N+   + Q    G G+ +LPD +V+ +     LV +  D   P   
Sbjct: 179 DGDVLVEVSGSMVANTSAGLYQAARAGMGVVMLPDALVQRDLQEGRLVALFPDYHLPRRP 238

Query: 269 VYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               Y   L++  +L   R+F+      W
Sbjct: 239 TNLLY---LQDRYRLPKLRSFVEYATGLW 264


>gi|78059678|ref|YP_366253.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964228|gb|ABB05609.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 301

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 126/292 (43%), Gaps = 27/292 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V   GS + AA  L + QS++S +I+ LE  +GI L YRHAR LT T  G   +
Sbjct: 10  MRIFVRVIERGSISMAARDLDMGQSTVSERINRLEEYLGIPLLYRHARTLTRTSDGQAFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    ++      QE   +  G  RI+    LG+ ++   L E    YPD+ I L 
Sbjct: 70  ACCKAALSAVDDALAVAQEHR-EIRGMFRISAPQSLGEIIMPAVLLEIKAQYPDLYIDLD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSL------IQRKLVTIHMHAYAAPHYLKNCREPL 181
           L++  +D      D ++RL +P++          ++RKLV       AAP YL    E  
Sbjct: 129 LNDSIVDPVTAGVDISLRLGRPVEGRGAKYRMGHVRRKLV-------AAPSYLARYPEIE 181

Query: 182 SIQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               L +H  I     +GD + +  +      ++   +G      + V+ + +  +  + 
Sbjct: 182 DPHGLSQHPFIRVRGVYGDRLLELDDSRGESISISLDLG------MTVSHWRAARELLLG 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+GI +L      D   +  L +I+ D   P F ++   P       K +A 
Sbjct: 236 GAGIGVLQLPACLDALTDGRLQQILPDYTVPGFDLHLILPVTRPIPAKTRAI 287


>gi|206563656|ref|YP_002234419.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039696|emb|CAR55666.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 290

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 21/250 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +R F  V R GS + AA  L +  S+++R+I  LE+ +GI+LF R  RG   T++G 
Sbjct: 3   WDDIRYFLAVMRGGSLSAAARALQVQHSTVARRIDALESALGIRLFDRLPRGWPPTDEGL 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            L    +E   +LE        ++       G +R++ +     + L   L      +P 
Sbjct: 63  HL----AEHAARLEADAHAFARAAQGAAALDGVVRVSASPVFASHFLAPRLARAQRAWPA 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L+ +    ++    AD A+RL +P +   L  R+L T+     AAP +        
Sbjct: 119 LRIDLMGEMHAANLYAREADLAVRLSRPSE-PGLAARRLGTMRFALCAAPEW-------- 169

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +    D    I + D + +  +   WL          R      N   +  + C  G+G+
Sbjct: 170 ADAPPDTWPFIGYDDALAQTPQQ-QWLER----FAAGRRFAFIANDLAAQHRACAAGAGV 224

Query: 242 ALLPDYIVKD 251
           ALLP ++V D
Sbjct: 225 ALLPRFLVDD 234


>gi|239820417|ref|YP_002947602.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805270|gb|ACS22336.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 304

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 122/272 (44%), Gaps = 7/272 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F VVAR  SFT AA Q+ +S+S++S  +  LE  +G++L  R  R +++T+ G++
Sbjct: 7   NDLQAFVVVARERSFTRAAAQMGVSRSALSHSMLALEARLGVRLLTRTTRSVSVTDAGAR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +     +E     L     KP+G +RI T       +L   L   L  +PDIQ++
Sbjct: 67  LLHTLAPRLQDIERELESLCAMRDKPAGTVRITTHDHAVATVLWPRLLPLLKQHPDIQVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             +D    DI+ +  D  +R+   +    +       + M   A+P YL     P+   +
Sbjct: 127 FSVDYGFTDIAAERFDAGVRVGNRVDKDMVAVPIAPALRMAVAASPDYLAGKPVPVKPAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L  H  +     +P     + W     R     R+    V N+   +++  +   G A +
Sbjct: 187 LTAHRCVNL--RLPTHGGLYAWDFEKGRKQVSVRVQGQTVFNNTFLMLRAALDDMGFAYV 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           P  I++   +   LV +++D   P+F  Y  Y
Sbjct: 245 PFDIMEQHIEEGRLVPVLQD-WWPAFPGYHLY 275


>gi|163746544|ref|ZP_02153902.1| putative transcriptional regulator [Oceanibulbus indolifex HEL-45]
 gi|161380429|gb|EDQ04840.1| putative transcriptional regulator [Oceanibulbus indolifex HEL-45]
          Length = 302

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +  D++  F  V   G+ T  A +L+LS+S IS++IS LET +G  LF R+A  ++ T
Sbjct: 1   MKYTLDEIETFLAVMELGTITAVAARLNLSKSVISKRISDLETTLGAALFRRNAGRISPT 60

Query: 61  EQGSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           E   +L    R           +            G L IA  +  G   L   +  F  
Sbjct: 61  EAAQRLDDRLRPALAELTAAAESAAWGGAGDDVLRGTLSIAAPMSFGTLHLSPIIARFAA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P +++++  D++  D+  D  D A+R+   ++ ++L+QRKL        A+P YL   
Sbjct: 121 QHPKLEMRIDYDDRARDLFRDGFDLAVRIGN-LRDTALMQRKLCEDETIPCASPAYLDRY 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P ++  L  H +I +     + M +   L T D        S L +N+  ++    + 
Sbjct: 180 GRPETLDHLGDHQVIGY-----QHMSNAQ-LWTFDNSTPPALHSRLTLNNGEAMRDMAIE 233

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+A+LP ++         L RI+ +  T +  +   +P       KL+ F +++ 
Sbjct: 234 GLGVAILPAFLAMAPIRKGKLERILPNAQTRNLPIVAVWPPVSPMPQKLRQFIDYLI 290


>gi|186472186|ref|YP_001859528.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184194518|gb|ACC72482.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 319

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 104/200 (52%), Gaps = 1/200 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +  + SFT AAE L + +++ +  +  LE  +G  L  R  R L+LT +G+  +
Sbjct: 8   MRTFMRIVDTNSFTRAAESLEIPRATATTIVQNLEALLGTTLLVRTTRRLSLTPEGAAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++   ++  +  L+++   PSG+LR+     +  +++   L +F   YP I + + 
Sbjct: 68  ERCAQILADIDEMEATLRQTLDNPSGRLRVEMPGAVATSIVLPALDDFHERYPSIDLAIG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++++D+  +  DC+I+L + +  S L  ++L T+     A+P YL+    P S+ +L 
Sbjct: 128 VSHRNVDLVGEAVDCSIQLGE-LPDSGLAAKRLGTLEHVTCASPAYLERYGMPESLDDLS 186

Query: 188 KHNLITFGDLIPKCMEDFNW 207
           +H  +     +     DF++
Sbjct: 187 EHVAVNCMSALTGRAVDFDF 206


>gi|313499976|gb|ADR61342.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 317

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 116/252 (46%), Gaps = 12/252 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    +  T  G+ 
Sbjct: 8   DQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDNLESAVGSRLFTRSTHAVRATPAGNA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL+ Y  + +Q
Sbjct: 68  FAERARRIIQELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLVAYTGLDVQ 127

Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+   +    D  +R   P+  + L+   L  +   A A+P YL +   P  
Sbjct: 128 LRLIDSFVDLQGSHLGEVDLVLRA-GPLADTRLVATPLAYMVRIACASPAYLASRGIPTC 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             EL  H+ + +  L P     F W   +A   R +  P    +  N+  +++   + G 
Sbjct: 187 PSELPGHDGLDWDGLAPP----FAWRFRVAGQTR-LYRPARMRMAANNAETLLFGALAGL 241

Query: 240 GIALLPDYIVKD 251
           GIA LP +++ +
Sbjct: 242 GIAHLPTWLISE 253


>gi|292487207|ref|YP_003530079.1| carbapenem-hydrolyzing beta-lactamase transcriptional activator
           [Erwinia amylovora CFBP1430]
 gi|291552626|emb|CBA19671.1| Carbapenem-hydrolyzing beta-lactamase transcriptional activator
           [Erwinia amylovora CFBP1430]
 gi|312171308|emb|CBX79567.1| Carbapenem-hydrolyzing beta-lactamase transcriptional activator
           [Erwinia amylovora ATCC BAA-2158]
          Length = 305

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 128/299 (42%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFTALNDATRKLQARSAK--GALTVSLLPSFAIQWLVPRLTSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++D +   D  D AI   R   P     L   KL   ++    +P  L       S
Sbjct: 127 IQAVDRDEEKLADDVDVAIFYGRGNWP----GLRAEKLYAEYLLPVCSPQLLTGAHPLTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLG 238
              L  H L     L      D+    +  R +G   I+ +Q     S    ++Q  + G
Sbjct: 183 PTALAHHTL-----LHDASRRDWQ---SYTRQLGLNTIN-VQHGPIFSHSAMVLQAAIHG 233

Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 234 QGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|16263687|ref|NP_436480.1| beta lactamase transcriptional activator [Sinorhizobium meliloti
           1021]
 gi|14524402|gb|AAK65892.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 294

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 134/289 (46%), Gaps = 18/289 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT A  +L +SQ++IS Q+  LE  +G+KLF R  RGL LT++GS 
Sbjct: 9   NALRAFEASARHCSFTRAGLELRVSQTAISHQVKSLEDLLGVKLFRRLPRGLALTDEGSA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+V+ ++  T    +E +      + +  T  +G   L   L +F   +P + ++
Sbjct: 69  LAPVMSDVFKRMCATLSRFEEGNFHEVVTVGVVGTFAIG--WLMERLPDFHDAHPSLDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ +N  +D++ D  D AIR        +     L    +    +P      +EP+ +  
Sbjct: 127 ILSNNNRVDLAGDGLDFAIRFGDGSWHGTDAM-HLSAAQLSPVCSPQIAARLKEPVDLAR 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++          + +      W A   R  G   P +  +  ++ L++ +    GSG AL
Sbjct: 186 IE----------LLRSYRSDEW-AQWFRAAGAQPPILRGMVFDTSLALAEAAARGSGAAL 234

Query: 244 LPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP  + +      R+++  D+   +   +  + ++ + T  + AF++++
Sbjct: 235 LPITMFEHYLESGRLVQPFDITISAGDYWLTWLKSRQFTRGMIAFKSWL 283


>gi|116694377|ref|YP_728588.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528876|emb|CAJ95223.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 296

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 133/294 (45%), Gaps = 13/294 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +  SGS   AA  L L+ ++++  ++ +E  +G +L  R  R + +TE G   +
Sbjct: 1   MQVFCQIVDSGSMAQAARVLGLAPATVTGALARIEKRLGARLLDRTTRRIAVTEAGRLWY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +    +  ++  + +P G+LR+   + +    +  +L EF   +P I + L 
Sbjct: 61  KHAKRIIEQSHEAEDAVRRLASEPRGELRVTLPLGVALTFVYPHLDEFTARFPRISLDLQ 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D A+R  +P   S+   R L T      A+P YL +   P    EL 
Sbjct: 121 VSDRIVDLVANGFDLALRAGRP-GDSAFSARCLSTYRRVTCASPGYLASHGAPRHPTELA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +           +W   VD   +  P       N   +++ +   G GI   PD
Sbjct: 180 RHQCLIYRHE----PHSSSWQYQVDGTTMAIPVDGAFSSNESHALIAWAKAGKGITRQPD 235

Query: 247 YIVKDN---PNLVRIME--DVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++V+ +     L+R++E  D I  S    +Y  +P+   +  K++AF  F   K
Sbjct: 236 WLVEQDLLSGGLIRLLEEYDEIGASEQPGIYAVFPKPRNHPRKVEAFVKFFSQK 289


>gi|325276018|ref|ZP_08141837.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324098850|gb|EGB96877.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 309

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 127/292 (43%), Gaps = 10/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L  F   A  GSF  AA +L ++ +++ + ++ LE  +G++LF R  R LTLTE G 
Sbjct: 4   FNALECFIRSAEVGSFAEAARRLRITPAAVGKHVAQLEARLGVRLFQRSTRKLTLTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     S+ +  ++     L  +  +P+G LR++     G+  +   L EFL  YP I  
Sbjct: 64  RFLGEVSDSFRTIQYAVANLASAEGQPAGLLRVSMGTVFGRLYVLPLLGEFLRRYPAITP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+     D AI     +    ++ RKL   H    AAP YL+   +     
Sbjct: 124 DWHFDNRQVDLIGQGFDAAIGGGFEL-PPGVVARKLTPAHRVLVAAPAYLQRHAQIDEPP 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL---GSGI 241
            L +H+ I      P+     +W  T  R  G+  +   Q  +       C +   G GI
Sbjct: 183 VLQRHDGILIRS--PQTGRVRSWPLT-SRWQGQQPLLLRQAMTMSDSDAACAVAEQGLGI 239

Query: 242 AL--LPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL  LP  +       L R++ D       +   + E     GK +AF +FI
Sbjct: 240 ALVSLPFAVPYLQAGRLQRVLPDWYVDDGHISLYFAEHKLLPGKTRAFVDFI 291


>gi|322515351|ref|ZP_08068347.1| transcriptional regulator [Actinobacillus ureae ATCC 25976]
 gi|322118638|gb|EFX90860.1| transcriptional regulator [Actinobacillus ureae ATCC 25976]
          Length = 296

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 139/289 (48%), Gaps = 24/289 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +D+  + VF  V   G+   AAE+L ++ S++++ I  LE  + IKL  R  R L+LT+ 
Sbjct: 2   YDYKAILVFVTVVEQGAMQAAAEKLSMTPSAVTQTIKKLENHLKIKLLNRTTRKLSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++  + + H  E     ++    +P G+L+IA+   L  + L    K  L  +P+I
Sbjct: 62  GNIFYQHIAHIQHSAENAVRSIEALRSEPVGELKIASVSGLIDSFLIRTFKNILDNHPEI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH----AYAAPH-YLKNC 177
           ++ +  ++  +DIS    +  +R      S ++   + V  H+H    A  A H Y+K+ 
Sbjct: 122 RLNITFEDTPVDISEQKFNILLR------SGNITDDRTVARHLHNFEWAIVAHHDYIKHH 175

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--P--RISCLQVNSYLSIMQ 233
             P ++ EL+K + I++ D   K  +    L +  R      P  RI+C  +N+   ++ 
Sbjct: 176 GLPKNLSELEKLDWISYPD---KEKKKSPILLSRGRDTATFMPYYRITCNSLNAAKGLL- 231

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKN 279
             + G GI  LP   ++D   +  L+ +  D   P   +Y   P+ +++
Sbjct: 232 --LNGLGITKLPIKYIRDQLESGKLISLCSDWKLPKTPLYLVTPQRIQS 278


>gi|150377477|ref|YP_001314072.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032024|gb|ABR64139.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 294

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 18/289 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT A  +L +SQ++IS Q+  LE  +G+KLF R  RGL LT++GS 
Sbjct: 9   NALRAFEASARHCSFTRAGLELRVSQTAISHQVKALEDLLGVKLFRRLPRGLALTDEGSA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+V+ ++  T    +E + +    + +  T  +G   L   L +F   +P++ ++
Sbjct: 69  LAPVMSDVFKRMCATVSRFEEGNFQEVVTVGVVGTFAVG--WLMERLSDFHDAHPNLDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ +N  +D++ D  D AIR                T  MH  AAP  L     PL    
Sbjct: 127 ILSNNNRVDLAGDGLDFAIRFGDGSWHG--------TEAMHLIAAP--LSPVCSPLIAAR 176

Query: 186 LDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +   +   +L+     D    W          P +  +  ++ L++ +    G G AL
Sbjct: 177 LVEPADLARIELLRSYRSDEWAQWFQAAGSQ--SPVLRGMMFDTSLALAEAAARGFGAAL 234

Query: 244 LPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP  + +      R+++  +V   +   +  + ++ + T  + AF+ ++
Sbjct: 235 LPVTMFEHYIETGRLVQPFEVTVAAGDYWLTWLKSRQFTRGMLAFKRWL 283


>gi|116694714|ref|YP_728925.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529213|emb|CAJ95560.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 300

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 124/288 (43%), Gaps = 13/288 (4%)

Query: 6   DKLRVFYVVAR---SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR      R    GS T AA  LH S  ++ R ++ LE E+ ++L  R  R L+LT +
Sbjct: 6   DKLRAMQTFVRIVDEGSLTAAATTLHTSLPAVVRTLAALEFELQVRLLNRTTRRLSLTGE 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +   ++  +  L  S V+PSG+L +  ++  GQ  +   +  F+  YP +
Sbjct: 66  GRSYLDSCRRILATIDEVEAGLTASHVEPSGQLTLTASVLFGQMYVAPAVTRFVQRYPRV 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++   ++ +++  +  D  +R+  P+  S+L+ + + +I     A P YL+    P  
Sbjct: 126 RCRMEFTDRVVNLLEEDLDVGVRI-GPLADSTLVAQTVGSIRRVVVATPAYLRKHGVPRH 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
            +EL   N + F            W    D      ++S  L+ N     +  C  G+G 
Sbjct: 185 PEELASANCVRF-----TGNHAHWWTFQEDGREFHVQVSGNLEFNQTAPAVAACAEGAGF 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
                Y V    +   L  ++E    P++ +   YP A     + +AF
Sbjct: 240 GHFLSYQVAQLVEARKLRIVLEAFEQPAWPLSLIYPHARLLPARTRAF 287


>gi|239993963|ref|ZP_04714487.1| LysR family transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 319

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 8/241 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VA  GS T AA +L +S S+ S  +  LE ++G+ LF R  R + L+ +G +
Sbjct: 4   EDLSVFVKVAEVGSITTAAIKLDISSSAASMAVKRLEEQLGVALFVRSTRKIRLSPEGEQ 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              +  +    L+     + E      G+LR+A + ++G+NL++  L +     P++ ++
Sbjct: 64  YLPMAKQALDTLQQGLALVTEQKQSIHGELRMAMSSEMGRNLMRELLNKVQRENPELSLR 123

Query: 126 LILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L + +  +D   D  D A+R   +  ++ S +   K+  I     A+P YL+   EP ++
Sbjct: 124 LHVSDSRVDFYRDGVDVALRAMTKDAVKESQMYGFKVCNIPHVICASPDYLERNGEPTTL 183

Query: 184 QELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L +HN + +   D      E  N    V   +   R     VN    + ++CV G GI
Sbjct: 184 TDLAQHNALLYKLYDQTHNTWELINEGERVKVKVNSNRA----VNDGDIVRRWCVDGEGI 239

Query: 242 A 242
           A
Sbjct: 240 A 240


>gi|186475112|ref|YP_001856582.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191571|gb|ACC69536.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 301

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 138/295 (46%), Gaps = 19/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SFT AA+ LH+ +++++  +  +E  +G +L  R  R + LT  G 
Sbjct: 4   FQEMQVFVRIAERQSFTRAADDLHIPRATVTNLMKRMEARLGARLLERTTRTVRLTHDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E  +   ++++  P G LR+     L ++ +   L  FL  YP I++
Sbjct: 64  AYYGRCVRLLADMEEAEGSFRDAA--PKGLLRVNLQGTLARHFVVPALPAFLSRYPGIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL+    P S  
Sbjct: 122 HIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVARLEQVTVASPAYLERHGMPCSPD 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLG 238
            L  H  + +     G  +P    +F    TVD  + E ++  +  V          V G
Sbjct: 181 ALAMHCAVNYVSSATGHALPL---EF----TVDERVVEVKLEAIVSVTGTDLYSGSAVAG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  +P Y V++     +LV ++     P   V   YP++ + + +++ F  ++
Sbjct: 234 LGLVQVPRYRVQNEIAAGSLVVVLPQFPPPPMPVTVLYPQSRQLSSRVRVFAQWL 288


>gi|261339966|ref|ZP_05967824.1| glycine cleavage system transcriptional activator [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317879|gb|EFC56817.1| glycine cleavage system transcriptional activator [Enterobacter
           cancerogenus ATCC 35316]
          Length = 305

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 131/299 (43%), Gaps = 33/299 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R  S T AA +LH++  +ISRQI  LE  +G++LF R  R + LT++G++ H
Sbjct: 12  LRAFEAAGRLSSMTLAAAELHVTHGAISRQIRKLEEHLGLRLFLRLTRQIILTQEGAEFH 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +L      L+     P+  LRI+T++      L   L      YPD  I L 
Sbjct: 72  HAVTRILGELTGESERLR--GRNPARSLRISTSVSFASKWLAPRLSRLRERYPDFDIHLD 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + + ++D++    D AIR        +  +R ++   +    +P +            LD
Sbjct: 130 VTDINVDLNNGQVDVAIRYGNGHYREASCER-IIEETVTPVCSPGF------------LD 176

Query: 188 KHNLITFGDLIPKCM---ED---FNWLATVDRPIGEPRISCLQVNSYLS---IMQYCVLG 238
            HN +T    +  C+   ED    NW A      GE  I C +  S+       +  + G
Sbjct: 177 AHNGLTDVKQLSGCVLLHEDRMLANWDAWFV-VAGEKNIRCQRGPSWSHGSMAAEAAIRG 235

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVY------FCYPEALKNTGKLKAFRNFIF 291
            G+AL    ++ D+    R++  V  P + +         Y    +++ K++A R +++
Sbjct: 236 EGVALGRSILIADDVAAGRLI--VPFPQYKLIAERGYDLVYRSGSQDSFKVRAVREWLY 292


>gi|28870046|ref|NP_792665.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853292|gb|AAO56360.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 304

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 86/179 (48%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR  SF  A  ++ +S S++S  + GLET +G++L  R  R +TLT    +L  + 
Sbjct: 14  FLAIARHQSFRKAGLEVGISASALSHAMKGLETRLGVRLLNRTTRSVTLTAADEELQGLI 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S   + +      L     +P+G++R+    D  + LL   L  F+  YPDI++ L + N
Sbjct: 74  SAPVNDIGQALETLNRLRDEPAGRIRLNVLSDGAKLLLGPVLPVFIDRYPDIEVDLTVTN 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           K +DI  D  D  IR    +    + QR    +      AP YL+    P   ++L +H
Sbjct: 134 KMVDIIGDGHDAGIRFGGTVPEDMIAQRLSPDVAWAVVGAPAYLERFGTPKHPEDLHQH 192


>gi|170722039|ref|YP_001749727.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169760042|gb|ACA73358.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 310

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 18/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++E G +  
Sbjct: 7   MRTFTRVVECGSFAAAANALDISAAQVSRIVAELENQLQTRLLHRTTRRLRMSEAGERFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++    E    E + + + P G+LR+     LG  LL   +  +  L PD+ ++L 
Sbjct: 67  ERSRQILLLTEEAVGEARGAHLTPRGRLRLHCPHGLGL-LLMPLVAGYNALCPDVVVELT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D   +  D  I + + +  S LI   L TI     AAP YL+    P   ++L 
Sbjct: 126 LSQRNPDPLAEGHDVVITVDEALPDSQLIAVPLGTIFSIPCAAPSYLEVHGVPERPEDLH 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +      P    D+ +   +D  +  PR S L  N   +++    LG GI LLP Y
Sbjct: 186 EHRCLRMA--YPMYEGDWVFPQGLDHCVIAPRDSFL-TNVADAMLVASELGMGIGLLPFY 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 +   L R++         +Y  YP            R+++  K R W
Sbjct: 243 TASQAIEQGRLRRLLAPYRLRECALYAMYPS-----------RHYLDAKVRTW 284


>gi|83718066|ref|YP_440050.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651891|gb|ABC35955.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 299

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 127/298 (42%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 13  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G L + T        L   L +     P + ++++
Sbjct: 73  AAVRQSLDALRVATADIR--SRRANGTLTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 130

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
             ++DID   D+AD AI           S+ L Q ++  +   A+ A H          R
Sbjct: 131 T-SQDIDPQRDHADVAILFGAGDWPGCTSTRLFQERVTPVCSPAFRAAHADIAQPADLLR 189

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 190 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 238

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 239 NQGVALGWAPLV-DTPVAAGQLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 295


>gi|261251795|ref|ZP_05944369.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260938668|gb|EEX94656.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 303

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 127/260 (48%), Gaps = 11/260 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSF+  A++L LS SS+SR I+ LE  +  KL  R  R + L+  G ++
Sbjct: 12  EMAIFVNVVESGSFSKTAKKLGLSPSSVSRSITRLENALEEKLLERTTRQMRLSTTGQEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           + + +++ +  +      Q    + SG LR+A    L + +L   + +F+  YP++ +QL
Sbjct: 72  YSLCNDMMNSAKMAVSAAQADKSEVSGSLRVAAPKALSRQVLMPMILDFIETYPNVALQL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            + +  ID   D  D  I +  KP +   LI R L    +   A+P Y++    P+   +
Sbjct: 132 KVADHYIDPIGDEVDVIIHITDKPTE--GLIARTLDECRLIMCASPSYIEQHGMPIHPDD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           + +HN +  G+     + DF+  L  V   +         VN      +  + G GI++ 
Sbjct: 190 IAQHNCLCLGENPRDRVWDFSHNLKKVSINVS----GSFAVNHSEIRREAVIRGVGISVF 245

Query: 245 PDYIVK---DNPNLVRIMED 261
           P++ ++   D+  +V +++D
Sbjct: 246 PEFAIRSYIDSGEVVEVLKD 265


>gi|260768705|ref|ZP_05877639.1| hypothetical protein VFA_001760 [Vibrio furnissii CIP 102972]
 gi|260616735|gb|EEX41920.1| hypothetical protein VFA_001760 [Vibrio furnissii CIP 102972]
          Length = 303

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 5/242 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  V + G  T AA+ L L +SS+SR+I  LE    +KL  R AR  TLTE G  
Sbjct: 5   EALTLFQHVVQLGGITQAADFLSLPKSSVSRKIKELEDHYNVKLINRSARHFTLTEAGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H  + +V   ++  + E+     + SGK+R+     + + L +  L+EF   YP IQ++
Sbjct: 65  FHAHSRDVLTHVDVLEQEMAAYGQEMSGKIRLLCVSPMIKCLGE-LLREFCKAYPHIQLE 123

Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L   +  +  I     D  ++L +P+  S+L+ +++  ++   YA+P YL     P   +
Sbjct: 124 LHAQEVVERTIPKRRFDLLVQLGQPV-ISNLVAQQIGAMYADYYASPAYLAEFGTPKLPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H LI F ++  +    F W  +  R +   R +   V+S          G GIALL
Sbjct: 183 DLLQHRLI-FREM-SQDEHKFWWFESPTRKLDLGRANMTIVDSPEMTFTLATQGFGIALL 240

Query: 245 PD 246
           PD
Sbjct: 241 PD 242


>gi|261819624|ref|YP_003257730.1| DNA-binding transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261603637|gb|ACX86123.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 314

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 113/260 (43%), Gaps = 30/260 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S S++S+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 7   MSVFARVVECGSFTAAARQLQMSVSAVSQTVSKLENELQVKLLNRSTRSIGLTEAGKIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H+      +L   +  P G LRI ++  + Q++L     + L  YP + + L+
Sbjct: 67  HGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQHVLSTMTAKMLKEYPGLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  +  D  IR+  P+Q S L   +L ++ M   AA  YL     P       
Sbjct: 127 AGIPAPDLIANGLDIVIRV-GPLQDSGLFSTRLGSMPMVVCAAKSYLAQHGTPEK----- 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR---------PIG-EPRISC---LQVNSYLSIMQY 234
                      P  M +F+WL    R         P G   RI+       N   +++++
Sbjct: 181 -----------PTDMGNFSWLEYSVRLDSEFELIAPEGISTRITPQGRFVTNDPQTLVRW 229

Query: 235 CVLGSGIALLPDYIVKDNPN 254
              G+GIA +P   + D  N
Sbjct: 230 LKTGAGIAYVPLMWIVDEIN 249


>gi|213161254|ref|ZP_03346964.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427398|ref|ZP_03360148.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213585942|ref|ZP_03367768.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213648257|ref|ZP_03378310.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 307

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G   L
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +   + H  E  +   Q   + P G LR+         LLQ NL  F+  YPDI++ +
Sbjct: 69  ASIRPALNHIDEAMEHACQSRDI-PGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL
Sbjct: 128 DVNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +         +  + ++    R    P  + L VN     +     G+ +  + +
Sbjct: 188 INHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAELTYVFE 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 247 QDVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297


>gi|170750804|ref|YP_001757064.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657326|gb|ACB26381.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 295

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 135/301 (44%), Gaps = 27/301 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F   AR GSFT AA++L ++  ++SR +  LE  +G+ LF RH R + LTE GS 
Sbjct: 9   NALKAFEAAARHGSFTRAADELRVTHGAVSRHVQTLEGWLGLPLFERHNRRVVLTEAGSA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGK---LRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                +E+   L+  +I L  +     G+   LR+          L   L  F    P I
Sbjct: 69  ---YATEIGAALD--RIALATARQAERGRPRLLRVNALATFTLRWLIPRLSGFQRANPSI 123

Query: 123 QIQLILDNKDIDISMDYADCAIR----LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +++L   N  +    +  D AIR     R   +++  +  + + +      +P  L+  R
Sbjct: 124 EVRLTTSNVPLASVAEPFDVAIRGGPDSRPGHRAAPFLSERRIPV-----CSPDLLR--R 176

Query: 179 EPLSIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            PL + E L +H L+    L P+   D  WL     P   PR +    + YL+ +Q  + 
Sbjct: 177 LPLRVPEDLRQHTLLHAATL-PRVWPD--WLRAAGVPDLAPRATVTLEHFYLT-LQAALD 232

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTV--YFCY-PEALKNTGKLKAFRNFIFLKA 294
           G G+A+ P+ ++ D+    R+      P+     Y+ Y PE       ++AF  ++   A
Sbjct: 233 GLGVAMGPERLIADDVAAGRLTLPFAGPALPARSYYAYVPEPRAEDPAVRAFCGWLAEAA 292

Query: 295 R 295
           R
Sbjct: 293 R 293


>gi|91782256|ref|YP_557462.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686210|gb|ABE29410.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 317

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 127/290 (43%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD LR F  VAR+   + A ++L +  ++++R++  LE  +G+ LF +  A G TLT 
Sbjct: 12  LNWDDLRYFLEVARTQRASAAGKRLGVDHTTVARRVRELEAALGVILFDKSRADGFTLTS 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L R    V   +++   + + ++   SG +RI +T   G   L   +  F   + D
Sbjct: 72  DGHRLLRHADAVETAVQSASEQFRGATQGLSGHVRIGSTEGFGCFFLSPQIARFTAAHRD 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I ++     + +S   AD AI L +P +   +  R L    +  Y    Y        
Sbjct: 132 VSIDILPVPHFVSLSKREADMAITLERPERGKYVFTR-LCDYRLRLYGTRDYFLRHEPVR 190

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            I +L  H  I +  DL      +  +L      +     S   +  Y + +Q    G+ 
Sbjct: 191 CIADLRHHAFIDYVADL--AFSHELLYLNRTIPDVSSSLCSTSVIAQYFAALQ----GNA 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   NP LV I+ D +  +   +    E L+   ++    +++
Sbjct: 245 LAILPCFMAAPNPMLVSILPDEVVVTRQFWLSSREDLRKLRRITVLWDYL 294


>gi|90418619|ref|ZP_01226530.1| putative transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336699|gb|EAS50404.1| putative transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 340

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 20/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  VA + SF   A  L LS  S +R ++ LE  +G +LF R  R + LT+ G +  
Sbjct: 49  LRMFVAVAEAESFAGGARTLGLSGPSATRGVNALEARLGARLFTRTTRQVRLTDVGRRYL 108

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV   L+        ++ KP G LRI    + G+  +   L  FL ++P +  +++
Sbjct: 109 AEVREVLAHLQAADESAAGAAGKPVGHLRITCPQEFGRIYIAPLLTGFLDVFPGMSAEVL 168

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  +  D A+R+  P+ SS L   ++  +      AP Y      P    +L 
Sbjct: 169 MVDRVVNLVEEGIDVALRI-GPLASSDLAAVRIGQVRRVVCGAPAYFAEHGIPRDPADLA 227

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISCLQVNSYLSIMQYCVLGSGI 241
           +H L+         M D         P G      EPR++   V + ++I++    G G+
Sbjct: 228 RHRLVA-------TMPDGQARTWRFGPNGTRIVRVEPRLTVSSVAASIAIVRS---GWGL 277

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +  Y +    ++  L  ++ D       ++  + E  +   K++AF +F
Sbjct: 278 CRVLSYQIGPDLEDGTLQTVLADHEPEPLPIHLVHVEGRRAAAKVRAFVDF 328


>gi|83649144|ref|YP_437579.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83637187|gb|ABC33154.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 301

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF+  A  GS T AA +L ++ ++ S  I  LE  +   LF R  R L LT +G  
Sbjct: 5   NDLTVFHQTALHGSLTAAARELDITPAAASAAIKRLEQSLDTALFVRSTRSLRLTGEGES 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +      + L+T + EL     +  G LRI+ + D G+NLL   L EF   +P++ ++
Sbjct: 65  FLQHCRAALNALDTGRRELLAKKGEIGGTLRISASSDFGRNLLMPWLDEFQTQHPNLVLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  DI+ +  D A+R   P  S+  +   +V        +P Y +   +PL+ ++
Sbjct: 125 LELTDRVADINRENVDIALRYGAPPDSNH-VAFNIVRTRRIICGSPAYFERYGDPLTPED 183

Query: 186 LDKHNLITF 194
           L  HN + +
Sbjct: 184 LQNHNCLLY 192


>gi|126454788|ref|YP_001064744.1| DNA-binding transcriptional activator GcvA [Burkholderia
           pseudomallei 1106a]
 gi|167844091|ref|ZP_02469599.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|242317884|ref|ZP_04816900.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|126228430|gb|ABN91970.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|242141123|gb|EES27525.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 321

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G +
Sbjct: 10  NALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGGR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S  +   +L ++T        +   +  F+  +P+I ++
Sbjct: 70  YAQQVRAALALLADATREVRAS--ERDKRLVVSTLPSFAARWITPRIGPFIERHPEIDLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 128 LRASDSLVDFARDDVDVAIRFGHGVYPGLHVE-PLLDETFFPVCAP-TLNGGMLPETPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 186 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 240

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++A RN++ 
Sbjct: 241 RSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRNWLL 289


>gi|254230037|ref|ZP_04923436.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262392457|ref|YP_003284311.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151937425|gb|EDN56284.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262336051|gb|ACY49846.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 315

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 134/302 (44%), Gaps = 9/302 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D+  L +F    R  S T  A +L+L +S++S+ I+ LE     KL  R  R L +TE
Sbjct: 8   TIDFRTLSIFVTSCRLLSLTKCALELNLPKSTVSKAITKLEQHFEAKLLERTTRKLVITE 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +    + +  +  +   ++QE   +  G+LRIA    L   + +     FL  +P 
Sbjct: 68  AGQMVLERAASLVEEFHSIGQDVQEMEQQIQGRLRIAAPPALDAYMAEHIFLPFLKQWPK 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI L   N  +D+     D AIR+ + I    LI +KL        A+P YL  C  P 
Sbjct: 128 VQIALEASNDFVDLFSHGFDMAIRVGQ-IVDDRLIAKKLGYTTRVLAASPEYLAECGVPK 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + ++L  HN + +  +     E   W L + D  +     S     +  ++++  + G G
Sbjct: 187 TPEDLTTHNCLRYQYV----SEIGPWTLISQDNTVNVSVSSNFSSTTVEAVLKGALKGLG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LP   +    +N +LVR++    T    +Y  Y      T +++A  + I      +
Sbjct: 243 IANLPMQNMTQELENGSLVRVLPQWHTVPMPIYLVYRPGANRTRRVQAMIDHIMSLRSQF 302

Query: 298 KF 299
           +F
Sbjct: 303 EF 304


>gi|197295600|ref|YP_002154141.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195945079|emb|CAR57704.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 316

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 132/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+ G +  
Sbjct: 7   MRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTDAGQRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + E  ++  KPSG+L +  T   GQ+ +   +  +   YP + ++L 
Sbjct: 67  DRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQSYVVPAVVRYRERYPSVAVELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     DI  +  D +++L    +  S L+ ++L  +     A+P YLK    P ++ +L
Sbjct: 127 LSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGDVGSVLCASPAYLKARGTPRTVSDL 186

Query: 187 DKHNLITF-GDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H  +     L P+    ++  N   T + P+ +      QVN   ++      G GI 
Sbjct: 187 AGHACLQIVTPLFPRDRWHLDGPNGRETFELPLPD-----FQVNIADALGAALRAGLGIG 241

Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP         +  LVR++ D      TVY  Y        K++ F +F+
Sbjct: 242 SLPMSAALPALASGALVRVLPDYRLQKLTVYTLYASRQYLDAKIRTFVDFL 292


>gi|189350113|ref|YP_001945741.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189334135|dbj|BAG43205.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 300

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 132/305 (43%), Gaps = 35/305 (11%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V     F  A+  L + +S++SR+I+ LE ++G++L +R  R  ++T+ G
Sbjct: 3   DLNDLYFFAQVVDHRGFAPASRALGIPKSTLSRRIAALEQQLGVRLVHRSTRQFSITDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     V  + E  Q  +++   +P G +R+   + L    +   L EF+   P + 
Sbjct: 63  QHYYNHCKAVLVEAEAAQDAIEQMRAEPRGVIRLVCPVALLHARIAPMLAEFMAKTPRVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKL-----------VTIHMHAYAAP 171
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L             +  H  A P
Sbjct: 123 VHLEATNRVVDVIGEGVDVALRVRPPPLKDSDLVMRVLGERAWSLVASPALVRQHDIAVP 182

Query: 172 HYLKNCREPLSIQELDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSY 228
             L  C              + FG   P+    +E  + + T  R +  PR      +  
Sbjct: 183 ADLAGC------------PTLDFGPPQPQHAWQLEGRDGVQTTIRHV--PRFVT---DDM 225

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +++ Q  V G G+  LP  +V D      LVR++ D +  S  ++  +P        ++A
Sbjct: 226 VALRQAAVAGVGVVQLPMMMVSDEIRRGELVRVLPDWLPRSGIIHAVFPSRRGLLPSVRA 285

Query: 286 FRNFI 290
             +F+
Sbjct: 286 LLDFL 290


>gi|206559305|ref|YP_002230066.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035343|emb|CAR51218.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 310

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 6/187 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTDEGKLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     SGK+R+++T D G++ L   L EF  L+P +   L 
Sbjct: 67  NCCRQALQALDDADAMLQEGRNVVSGKVRLSSTSDFGRHQLLDWLHEFTTLHPGVTFSLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R+L T      AAP +++    P      D
Sbjct: 127 ASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLATNRRVLCAAPSFVERHGVP-----AD 180

Query: 188 KHNLITF 194
            H+L  F
Sbjct: 181 PHDLARF 187


>gi|187920519|ref|YP_001889551.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718957|gb|ACD20180.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 302

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 110/247 (44%), Gaps = 10/247 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VA   SF  AA QL ++ S+IS+ I  LE  VG  LF R  R + LTE G +
Sbjct: 13  DGVEAFLSVAEHRSFRRAAAQLGVTPSAISQTIRMLEARVGAALFVRTTRSVGLTEAGER 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + +L       +E   KP+G LR++        +L+  +  F   YP+++++
Sbjct: 73  FLSRAKPAFEELIGASELARELGQKPAGLLRLSVPSAAVPIVLEPLIASFCRAYPEVEVE 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   + +D++ +  D  +R+ + I++  +  R            P Y + C  P  I +
Sbjct: 133 VVASAELVDLAAEGFDAGVRMGQFIEADMVAVRLTPPFPFMVVGNPDYFRRCGRPERIDD 192

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H+ +      G + P    D +    V+  +  P I+      Y +++   + G G+
Sbjct: 193 LRSHHCLRMRRSNGAIAPWPFVDGH--KAVEAIVSGPLIA----QDYPTLLGAAIRGVGL 246

Query: 242 ALLPDYI 248
           A +P  I
Sbjct: 247 AHVPGPI 253


>gi|89094192|ref|ZP_01167134.1| putative transcription regulator protein [Oceanospirillum sp.
           MED92]
 gi|89081447|gb|EAR60677.1| putative transcription regulator protein [Oceanospirillum sp.
           MED92]
          Length = 297

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 133/288 (46%), Gaps = 20/288 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ +  V   GS+T AA++L  +++ IS QIS LE  + + L  R  R +  T  G   +
Sbjct: 7   MQAYLAVYEEGSYTAAAKRLGKTKALISTQISQLEEHLQVSLVTRSTRSVMPTTAGKSYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++   +  L+E      G+LRI+   + G+ ++   +   +  +PD++I+++
Sbjct: 67  EQCRQILDEISNLESRLKEQHHSLVGQLRISAPTNYGELIVMPFISGLIKKHPDLRIEIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +DI  +  D AIR+   +  SSLI  ++  + MH  A+  +L     P SI EL+
Sbjct: 127 LSDRYVDIVSEGFDAAIRIGN-LSDSSLIANQVGQVQMHLCASAEFLATFGTPQSITELN 185

Query: 188 KHNLITFGDLIPKCMEDFNW------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++           C+ D N+        T    I       ++VNS ++  Q     S +
Sbjct: 186 QY----------PCVFDSNYRHNYWQFPTAQGEITVTPTQSIRVNSAVAAAQIARNHSVL 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  PD+ V +      LV ++++       V   YP     + +++ F
Sbjct: 236 SYGPDFAVAEYIRTGELVTLLDNQFDNCQPVNIIYPHRKHLSARVRTF 283


>gi|241761202|ref|ZP_04759290.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374109|gb|EER63606.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 315

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 139/298 (46%), Gaps = 24/298 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VAR  +F+ AA++L +S S++S+ I  LE  +G+ LF+R  R + LT+ G++
Sbjct: 7   DGLVAFVCVARLANFSSAAQRLGVSPSAVSQSIRALEQRLGVMLFHRTTRSVNLTDAGAR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +L +   ++ + S  PSG LR+          L+  L++FL  YP+++++
Sbjct: 67  FLARVQPAVDELISASTDVGDDSGPPSGLLRLIMPRSGYLLALRPLLRDFLEAYPEMKME 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLS 182
           + +DN  +D+S    D  IR    ++          ++  +  A+P Y+      R P  
Sbjct: 127 IAIDNTMVDLSSHGFDAGIRFGGFVEKDVTSVNIGPSMRWYVVASPEYVAKRGIARHP-- 184

Query: 183 IQELDKHNLITF----GDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            ++L  H  I F    G++I +     ++ N +  +D          L +     ++Q  
Sbjct: 185 -RDLLGHECIKFRRTSGEIIQRWNFTNKNENLMINID--------GRLVLGDLAVMVQAA 235

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G G+    +  V+   ++  LVR++ D   P+  +   YP   + + K+K   +++
Sbjct: 236 LDGLGVIYTVNGYVERFIEDGRLVRMLADWSPPTSGLVLYYPAKPRISRKVKVLIDYL 293


>gi|326405559|ref|YP_004285641.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325052421|dbj|BAJ82759.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 313

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 7/253 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA  GSF+  A   + SQ  ISRQI+ LE ++G++L  R  R L+LTE G    
Sbjct: 7   INTFIRVAERGSFSAVARDFNTSQPVISRQIAALEDQLGVRLIQRTTRRLSLTEDGQTYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   ++     +  +   P+G++R+     +G   L   L EF   +P+I + L 
Sbjct: 67  EHAKAVVDAMDAANASVGSARKTPTGQVRLGVPTAVGL-YLAARLPEFFARHPEISLDLK 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+  +  D  I + +  Q +S+I R L T      A+P Y+     P + ++L 
Sbjct: 126 MRDGAFDLIEEGLDLVISIAEATQ-ASVITRVLGTATSVLVASPAYVAARGAPETPRDLL 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           KH  I +     +   D  W    D       +     V+S  ++ +    G GIALLP 
Sbjct: 185 KHECIVY----TRPGADREWRFARDGVEESVNVQGRFHVDSSEAVRRAARAGLGIALLPR 240

Query: 247 YIVKDNPNLVRIM 259
               D+    R++
Sbjct: 241 LTTIDDVAAGRLI 253


>gi|257140404|ref|ZP_05588666.1| DNA-binding transcriptional activator GcvA [Burkholderia
           thailandensis E264]
          Length = 315

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 132/289 (45%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA +L ++  ++S Q+  LE E+G+ LF RH + L LT+ G +
Sbjct: 5   NALRVFEAAARHESFSRAANELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGGR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S      +L ++T        +   +  F+  +P+I ++
Sbjct: 65  YAQQVRAALALLADATREIRASDR--DKRLAVSTLPSFAARWITPRIGPFIEQHPEIDLE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 123 LRASDTLVDFARDDVDVAIRFGYGVYPGLYVE-PLLDETFFPVCAP-TLNGGVLPETPAD 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 181 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 235

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++AFR ++ 
Sbjct: 236 RSLAMPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLL 284


>gi|195940984|ref|ZP_03086366.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. EC4024]
          Length = 248

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 18/244 (7%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E   G +L  R  R LTLT  G K+ +
Sbjct: 8   QVYNRICELGSLSAAARALGISRPMVSRYLEQMEKWAGARLVNRSTRKLTLTAAGEKVLQ 67

Query: 69  VTSEVYHKLETTQIELQESSVK--PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            T      L     E+++ SVK  PSG LR+A        ++   L + L  YP ++I+L
Sbjct: 68  KT----RTLSQISQEIEDQSVKESPSGTLRVACAHFTAMQIIAPVLPDLLQSYPQLRIEL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            ++N  + +  +  D AIR+    +   +I R+L        A+PHYL +   P  +++L
Sbjct: 124 DVNNHPVSLVGERIDVAIRITDNPE-PGMIARRLGECRSVLCASPHYLASRGVPEQLEDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI----MQYCVLGSGIA 242
            +HN + +        + + +L+    P GEP  + +  N   SI    M+  +   GIA
Sbjct: 183 ARHNCLHYSFF---AGQSWRFLS----PEGEPVTTAVSGNLSASISSLLMEAAINHCGIA 235

Query: 243 LLPD 246
           +LP+
Sbjct: 236 MLPE 239


>gi|152986332|ref|YP_001346330.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961490|gb|ABR83515.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 296

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 13/278 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +A SGS +  AE L LS ++ S  +S LE  +G  L YR++R L+LT+ GS+L   
Sbjct: 10  VFARIAESGSISAGAEALGLSAATASLHLSRLERNLGCALLYRNSRKLSLTQDGSRLLET 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +    E   IE ++ +V     LRI+            +L  F+  +PD+ + +  D
Sbjct: 70  ARSMLELYEKGFIEFRQRAVSTRNSLRISMPAVFINGDFTRHLASFIEEHPDLDLSVACD 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   DI  D  D A R+   +  SSL  R L  +     A+P +L     P   ++L++ 
Sbjct: 130 DSRHDIIADGIDIAFRIGD-LPDSSLKARHLFLLPRQVVASPAFLARQAPPEHPRDLERL 188

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             I   D+ P     F   A+ ++      PRI   +V+S  +  +   LG G+A  P Y
Sbjct: 189 EWIGL-DMRPDS-RVFEHAASGEQAQVRYTPRI---RVDSVEASCRLARLGVGLAAPPTY 243

Query: 248 IVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTG 281
           +  D P     L  ++ +       VY  +P  +  +G
Sbjct: 244 L-GDEPIRRGELRAVLPEWRLAPLKVYAVWPPNVPASG 280


>gi|78062155|ref|YP_372063.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970040|gb|ABB11419.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 322

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  SGSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVESGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P S  E
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTPQSPDE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L  H  +          E   W   ++R  GE  +     +  QVN   ++      G G
Sbjct: 185 LPNHVCLRLDTPASPAGE---W--RLERSDGEEAVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|218671234|ref|ZP_03520905.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 186

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 2/179 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA +GSF+ AA  L ++Q ++SRQ++ LE+    +L +R   GL+LT +G ++ 
Sbjct: 7   LRTFQRVAETGSFSAAAHDLDVTQPAVSRQVASLESHFNTRLLHRTTSGLSLTAEGERML 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   +   +E             SGK+R++    LG  L +  L +FL  +P + ++L+
Sbjct: 67  PMALRILEAVEELGDAAGSEGAMASGKVRLSVPAPLGLYLSE-RLGDFLAAHPKLSVELL 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  D+  +  D  +RL  P+  SSL+ R++        A+P YL     P + +++
Sbjct: 126 FREQSSDMIEERLDLEVRL-GPVADSSLVCRRIGWTTAFLVASPAYLARKAAPCTPRDI 183


>gi|167032441|ref|YP_001667672.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166858929|gb|ABY97336.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 312

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 128/295 (43%), Gaps = 16/295 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L  F   A  GSF  AA +L ++ +++ + ++ LE  +G++LF R  R LTLTE G 
Sbjct: 6   FNALECFIRSAEVGSFAEAARRLSITPAAVGKHVAQLEARLGVRLFQRSTRKLTLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     S+ +  ++     L  +  +P+G LR++     G+  +   L EFL  YP I  
Sbjct: 66  RFLGEVSDSFRTIQYAVANLASAEGQPAGLLRVSMGTVFGRLYVLPLLSEFLRRYPAITP 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+     D AI     +    ++ RKL   H    AAP YL+        Q
Sbjct: 126 DWHFDNRQVDLIGQGFDAAIGGGFEL-PPGVVARKLTPAHRVLVAAPAYLQQHAPIDDPQ 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM---QYCVL---G 238
            L +H  I      P+     +W  T      +P    LQ+   +++      C +   G
Sbjct: 185 VLHRHEGILIRS--PQTGRVRSWPLTSRWQAQQP----LQLRQAMTMSDSDAACAVAEQG 238

Query: 239 SGIAL--LPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIAL  LP  +       L R++ D       +   + E     GK +AF +F+
Sbjct: 239 LGIALVSLPFAVPYLQAGRLRRVLPDWYVDDGHISLYFAEHKLMPGKTRAFIDFV 293


>gi|110635047|ref|YP_675255.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286031|gb|ABG64090.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 302

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 138/288 (47%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  +LTE G   
Sbjct: 6   RMRAFIQVADAEGFSAAARKSGRSKALLSKYVRELEDELGALLLNRTTRKFSLTEAGGLY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   E+  +++     ++ES+    G+++++         +  +L +F   +P+I + +
Sbjct: 66  YQRALELVREIDALSETVRESASGIRGRIKLSAPRTFADAPIGQSLIDFATAHPEITLDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D AIR+ K +  SS+I R+L    +   A+P  ++   +P   +EL
Sbjct: 126 QLDDRFVDLVEEGFDLAIRITK-LDDSSMIARRLNPFRVLLCASPSLIEKYGKPTHPREL 184

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
              NL    D   +     NW       PI  P    ++ NS L++    + G G A +P
Sbjct: 185 --QNLPCLIDTNSRYRH--NWPFQEGGVPITVPVSGPIEANSPLAVRAAALAGLGFAFVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D+I         LV ++++ IT    ++  YP       K++A  +F+
Sbjct: 241 DFIAMAELKAGRLVTVLDEFITDGAGIFAVYPHRRYLPAKVRALVDFL 288


>gi|332529919|ref|ZP_08405870.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040616|gb|EGI76991.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 328

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 121/254 (47%), Gaps = 11/254 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  +  L +  V+A++ S+T AA +L +S++S S +I+ LE  +G+ L  R  R + LT 
Sbjct: 16  TLAYADLHLLTVLAQTRSYTQAARRLGVSKASASMRIAELERSLGLPLVRRTTRAVGLTA 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L       + ++E      ++ +  P G +R++  + LG+  +   L  F   +P+
Sbjct: 76  AGQQLVDDIGAAFARIEQGVASAKDLAGAPRGLVRVSAPVALGRQHIAPTLPAFARAWPE 135

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+L L ++ ++++ +  D AIR  +    +  +   L        A+P YL    EP 
Sbjct: 136 IRIELDLSDRFVNLAQEGFDLAIRHAQAAPDTQ-VATVLCDTRSVLVASPDYLARAGEPK 194

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--------SCLQVNSYLSIMQ 233
              EL +H  + +  L     + + +  +  R + +  +          L+ N+   + +
Sbjct: 195 HPAELARHQCLLY--LRGAAGQSWAFEKSTGRRVADSDVERVAVAVGGPLKANNSEVLRE 252

Query: 234 YCVLGSGIALLPDY 247
             + G GIALLPD+
Sbjct: 253 AALGGLGIALLPDF 266


>gi|260433699|ref|ZP_05787670.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417527|gb|EEX10786.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 303

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 129/292 (44%), Gaps = 13/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    + R GS + AA++L L+QS++SRQ+  LE ++G++L  R  + LTLT       
Sbjct: 14  LRALEALDRLGSASAAADELSLTQSAVSRQLQTLEAQLGVRLIQRDRKRLTLTPAAQD-- 71

Query: 68  RVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              +E+   L +  Q  L+       G L +A     G   L   L +F  L+PDI I +
Sbjct: 72  -YVAEIRQSLNQIAQASLRLHVTPAGGTLHLAILPTFGMRWLVPRLPDFARLHPDITINM 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +  + + +  D AI   +P    +  +R L+ +          L     P +  EL
Sbjct: 131 STRLRPFNFATEPFDAAIHFGEPDWPGT--ERLLLKVERVVPVCAPTLLPSGPPGNAAEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            K  L+      P+  +D  W A        P    +  + + +I Q  V G G+ALLP+
Sbjct: 189 LKLPLLHI-QTRPRAWQD--WFAQQGVTSPSPLPGTVH-DQFTTISQAAVHGLGVALLPN 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           Y+++ +     LV      +      Y  +P++  +   L+ FR+++  +A+
Sbjct: 245 YLIEQDLATGRLVAAYSGAVETMGAYYLVWPQSKSDEPSLREFRHWLASQAQ 296


>gi|213156937|ref|YP_002318982.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483788|ref|YP_002326013.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter
           baumannii AB307-0294]
 gi|213056097|gb|ACJ40999.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986112|gb|ACJ56411.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter
           baumannii AB307-0294]
          Length = 269

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 126/239 (52%), Gaps = 14/239 (5%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ S++S+ IS LE  +G++L  R  R   LT +G + +    ++ + L+  +  +  + 
Sbjct: 1   MTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQFYEQGIQILNDLDELEQSVTANH 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
           + P G++RI T+     + L   +  F   YP+I+++  L ++ I++     D AIR   
Sbjct: 61  I-PKGRIRIHTSFSYWTHFLLPCISLFNQRYPEIELEAHLSDEVINLVEQRIDVAIRT-G 118

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P++SS+L+ R L + + H+  +P Y++    P    EL +H L+     +    ++  WL
Sbjct: 119 PLKSSNLVARSLGSTYKHSVCSPVYIEKYGCPEHPDELHEHQLLD----VSYQRQNKTWL 174

Query: 209 ---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261
              AT +  +   ++  L+VN   +I+Q  + G+GIA L ++ +++      LV+I+ED
Sbjct: 175 FKKATQEISLTPSKV--LKVNHGEAILQLALAGAGIAQLNEFQIRNALQQKQLVKILED 231


>gi|167616751|ref|ZP_02385382.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257143238|ref|ZP_05591500.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 290

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 127/298 (42%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 4   LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G L + T        L   L +     P + ++++
Sbjct: 64  AAVRQSLDALRVATADIR--SRRANGTLTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 121

Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
             ++DID   D+AD AI           S+ L Q ++  +   A+ A H          R
Sbjct: 122 T-SQDIDPQRDHADVAILFGAGDWPGCTSTRLFQERVTPVCSPAFRAAHADIAQPADLLR 180

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 181 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 229

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 230 NQGVALGWAPLV-DTPVAAGQLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 286


>gi|319427248|gb|ADV55322.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 320

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 132/290 (45%), Gaps = 28/290 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT  G +
Sbjct: 5   EAAKVFVTIVERGSMISAANALDMSRSMVTRYLSEMEDWSGARLLHRSTRSLSLTPAGEQ 64

Query: 66  L----HRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +    HR+      +L      +  + V  P G LRI+ +  +   +L   ++++L  YP
Sbjct: 65  VLDYCHRLL-----ELANEVPAVSHAGVTIPRGLLRISCSQFMAHQILAPVVRQYLASYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              +   + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      
Sbjct: 120 QASVNFHVSSQTVDLVAERIDLAIRITNELD-PNLIARRLGECESVVCAAPSYLAARAAV 178

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-----------VN 226
           L  ++L +HN +T   FGD++ +  +       V     +P+++  Q            N
Sbjct: 179 LHPEDLTQHNCLTYSYFGDVMWRFYQTDVGAKQVQTLNSDPKLNQGQAFNVPVNGNFSAN 238

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
             + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y
Sbjct: 239 DSMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVTLLTEFMPQSLGVYGVY 288


>gi|238791588|ref|ZP_04635226.1| LysR-family transcriptional regulator [Yersinia intermedia ATCC
           29909]
 gi|238729204|gb|EEQ20720.1| LysR-family transcriptional regulator [Yersinia intermedia ATCC
           29909]
          Length = 305

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 1/193 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V    SF  A++ L +  S++SR IS LE  + ++L  R+ R + LT+
Sbjct: 4   ALDFNTLKVFIAVVERDSFVGASKILEMPTSNVSRCISQLEDRLNLQLIERNTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   +PD
Sbjct: 64  AGHLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVVADFACQHPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  + +    +   D  D AI + R  +  S  I R LVTI     AAP  ++    P
Sbjct: 124 LEISCVTNLSGFESLRDDLDLAIIVSRGQLDDSDYIARHLVTIPCTIVAAPSIIQRYGIP 183

Query: 181 LSIQELDKHNLIT 193
             IQ+ ++   IT
Sbjct: 184 SRIQQFEELPCIT 196


>gi|157960225|ref|YP_001500259.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845225|gb|ABV85724.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 304

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VA  GS T AA +L +S +  S  +  LE E+   LF R  R L LT+ G +
Sbjct: 4   NDLKLFIRVADCGSLTAAAVELDISTAVASAGLKRLEKELATTLFIRSTRSLRLTDAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      LE     ++ S    SG L +A   D+G+N+L   L EFL+ Y +++++
Sbjct: 64  YLIHCRRALADLELGHRAIESSQASISGLLSLAVPSDIGRNVLLPWLDEFLVEYSELKLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +   D   D  D A+R   P + SSL+  K+        A+P Y++   EP ++ +
Sbjct: 124 LHIGDNLSDFYHDKIDVALRSGVP-KDSSLVAFKICHSRRVLCASPDYIRQFGEPSALDQ 182

Query: 186 LDKHNLITF 194
           L +HN + F
Sbjct: 183 LPQHNCLFF 191


>gi|56413400|ref|YP_150475.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362323|ref|YP_002141960.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127657|gb|AAV77163.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093800|emb|CAR59280.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 301

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 117/245 (47%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH  +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHYAV--GYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|317493203|ref|ZP_07951626.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918863|gb|EFV40199.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 305

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 131/299 (43%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NSLRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSSLNEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNTAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++     D  D AI   +       ++R L   ++    +P  L           
Sbjct: 127 IQAVDREEGKLADDVDVAIFYGRGHWPGLRVER-LYAEYLLPVCSPQLL----------- 174

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLG 238
           L +H L    D+    +       +WLA   R +G   I+  Q    +    ++Q  V G
Sbjct: 175 LSEHPLKDPADMAYHTLLHDTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIAL+ + + +   +   LV    DV+    + Y    ++    GK+ AFR +I  +A
Sbjct: 234 QGIALVNNVMAQTEIEAGRLVCPFNDVLISKNSFYLVCQDSQAELGKIAAFRQWILARA 292


>gi|326317484|ref|YP_004235156.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374320|gb|ADX46589.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 340

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 1/168 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  +  SGS + AA QL  +Q ++SR++  LE  +G++L  R   G+ LTE G +  
Sbjct: 17  LQTFVRIVDSGSLSAAARQLGTTQPTVSRRLQALERGMGLRLLQRSTHGMKLTEDGERCF 76

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +  + +L+ +   P G LR+      GQ+ L   L  FL  YP++ ++ +
Sbjct: 77  THARELLAQWQAMESDLRGAHDTPRGLLRVQAPHAFGQDQLIAPLAAFLRRYPEVSVEWL 136

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           L ++  D   +  DCAI++  P++  S++  ++  +     A+P  L+
Sbjct: 137 LHDRQPDFIAEGIDCAIQV-GPVRDPSVVATQVAEVPRIVVASPGLLE 183


>gi|157372040|ref|YP_001480029.1| DNA-binding transcriptional activator GcvA [Serratia proteamaculans
           568]
 gi|157323804|gb|ABV42901.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 305

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 129/295 (43%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFTSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    + L   +L   ++    +P  L          +
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRAERLYAEYLLPVCSPSLLTGEHALKMTSD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
           L  H L+             +WLA   R +G   I+  Q    +    ++Q  V G GIA
Sbjct: 186 LAYHTLL-------HDTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHGQGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+ + + +   +   LV    +V+      Y    ++    GK+ AFR +I  +A
Sbjct: 238 LVNNVMAQTEIEAGRLVCPFNEVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|260469766|ref|ZP_05813924.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259028449|gb|EEW29767.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 310

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 3/247 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R F  VA  GS +  A +L + QS+I+R +  LE  VG+ L  R  R +T+T +GS
Sbjct: 8   FERMRTFVRVAERGSLSAVARELGVGQSTITRHVRELEEAVGVPLLSRTTRRVTMTAEGS 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +  + ++   +E    E + +   P+G +RI+ T   G   +   +  F   + DI I
Sbjct: 68  RYYANSVQILRLVEQASDEARSTRGAPAGTIRISCTAAFGVLHVSRLIFAFQDRHADIGI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  D A+RL  P+  SSL  R L        A+P YL     P    
Sbjct: 128 DLSLTDERVDLVREGIDIALRL-GPLTDSSLKLRALGQSRRLLVASPAYLAARGRPSVPS 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I   ++     E              P    L+++  L+  Q  V   GIA  
Sbjct: 187 DLSRHEGIRMSNV--AGSETLVLQGAGGERHMVPFAGRLRIDHGLAARQALVAARGIAPA 244

Query: 245 PDYIVKD 251
             ++V D
Sbjct: 245 HRWLVDD 251


>gi|42522467|ref|NP_967847.1| LysR family transcriptional regulator [Bdellovibrio bacteriovorus
           HD100]
 gi|39574999|emb|CAE78840.1| transcriptional regulator, LysR family [Bdellovibrio bacteriovorus
           HD100]
          Length = 293

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 133/284 (46%), Gaps = 20/284 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  +A SGSF+ AA+ L +S+S IS+ IS LE+++G+ LF R  R + LT  G +    
Sbjct: 6   AFVKIADSGSFSAAAQALGVSKSHISKTISLLESDLGVALFVRSTRKVQLTSVGERFLET 65

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +    L++ + E+ + S  P G LR+      G+  +   + +    YPD++I+L   
Sbjct: 66  CRQSLQNLDSAKKEILDLSNTPRGVLRVTLAGIFGEEYIAPVVIDMAKRYPDLKIELDFS 125

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLSIQEL 186
           ++ +D+  +  D AIR+   +++SSL+  K+ +   +  A+  YL    + +EP   ++L
Sbjct: 126 SRVVDLIEEKFDVAIRIGH-LENSSLLATKIASRVEYVVASKAYLSAAPSLKEP---EDL 181

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             HN I          E  +W      +    P     + N+   + +  + G GIA LP
Sbjct: 182 ANHNCIG---------ERSSWSFRKRGKSFHIPVKGNFKCNNPRVLQKAALTGLGIARLP 232

Query: 246 -DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             Y  +D     L+ ++E+       ++   P   K    +K F
Sbjct: 233 GSYAFEDIKKGRLISLLENFSEGRKDIWAVTPIRHKQNINVKIF 276


>gi|209520238|ref|ZP_03269007.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499313|gb|EDZ99399.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 296

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 131/295 (44%), Gaps = 19/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++RVF  +A   SFT AA+ L + +++++  +  LE  +G +L  R  R + LT  G 
Sbjct: 4   FEEMRVFVRIAERQSFTRAADDLQIPRATVTNLMKRLEERLGARLLERTTRTVRLTPDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E  + E   S++ P G LR+     L ++ +   L  FL  +P I++
Sbjct: 64  AHYERCVRLIADME--EAEGAFSNLAPKGLLRVNVQGTLARHFVVPALPAFLERFPGIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS+I R++  +     A+P YL    EP    
Sbjct: 122 MIGEDDRFVDLVREGIDCVLRA-GVLQDSSMIGRRVAQLQQVTVASPAYLAAYGEPADPA 180

Query: 185 ELDKHNLITF-----GDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            L  H  + +     G  +P +   D   +A V         S + V+         + G
Sbjct: 181 ALSAHRAVNYVSSATGKPVPLEFRVDGREIALV-------LPSAVSVSGAELYTGAAIAG 233

Query: 239 SGIALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  +P Y V       R   I+ D   P   +   YP+  + + +++ F  ++
Sbjct: 234 LGIVQVPRYHVDGELAAGRLRVILADYPPPPMPLSVLYPQNRQLSSRVRVFAQWL 288


>gi|78062880|ref|YP_372788.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970765|gb|ABB12144.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 319

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 119/253 (47%), Gaps = 7/253 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  + G TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L +F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVANTGEALSGHVRIGSTEGFGCFFLAPQLAQFRAEHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +   ++  KL    +  YA   YL N    
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATRDYLANHDPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +       N L  +DR +     + L+  S ++     + G G
Sbjct: 190 TCTDDLAQHAFISYVDDLAFS----NELLYLDRAV-PGATAGLRTTSVIAQYFAALQGGG 244

Query: 241 IALLPDYIVKDNP 253
           +A+LP ++    P
Sbjct: 245 LAILPCFMAATQP 257


>gi|241663021|ref|YP_002981381.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|309782060|ref|ZP_07676790.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
 gi|240865048|gb|ACS62709.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
 gi|308919126|gb|EFP64793.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
          Length = 321

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 128/298 (42%), Gaps = 31/298 (10%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AA++L L +SS+S  +S LE ++G++LF R  R L LT+ G
Sbjct: 5   DWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKMGVRLFERSTRRLRLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +     L   + E +  +  ++
Sbjct: 65  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMREHTGLR 124

Query: 124 IQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ +  + ID ++  Y       R P+  S L+ +++  +      AP  L+    PL+
Sbjct: 125 IEVDVAPRQIDPLAQGYDIMLTVPRGPLPDSGLVAQRVFDLRRAVVVAPQLLERL-GPLT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR-------PIGE----PRISCLQVNSYLSI 231
                 H         P  + D+  L T +        P GE    P    ++ ++    
Sbjct: 184 ------H---------PDQLTDWPCLGTSNEAEWQFRTPGGETINLPLDFRMRTSNSELR 228

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           MQ  + G G+A +      D   +  L  ++    +P   VY  +P       K+K F
Sbjct: 229 MQAAIAGLGVARITSVFATDLIASGALQEVLTGFQSPPMRVYAVFPGRRLMPAKVKVF 286


>gi|224583832|ref|YP_002637630.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468359|gb|ACN46189.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 301

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 117/245 (47%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L +T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLRIQLLQRTTRKLRVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|197120779|ref|YP_002132730.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196170628|gb|ACG71601.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 313

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 113/257 (43%), Gaps = 9/257 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DW  L  F  + R+GS   AA +L + +++++R+++ LE  +G+ LF R  +G   T 
Sbjct: 20  GLDWGHLEFFLELVRTGSHARAARRLGVDRNTVARRVAALEGALGLALFERGPQGWACTT 79

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L  +   V   +               G +R+ T   L  +L    +      +P 
Sbjct: 80  TGQELAELALRVEQDVLALARHADTRDRALDGTVRLTTASHLATHLFLPAVGVLRERHPG 139

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D +  D++   AD A+R+ +P + + L+ RKL  +    Y     +    +P 
Sbjct: 140 LVLEIAADQRAFDLTRREADLAVRMGRP-RDAGLVTRKLSDVAYGLYGGREVVGG--KPR 196

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +      +   D     +    WL  V       R    + NS  +++Q   LG G+
Sbjct: 197 AV-DFAADPFVGL-DEGHAAVPQERWLERV----APARRIVFRCNSTTALLQAARLGLGV 250

Query: 242 ALLPDYIVKDNPNLVRI 258
           A+LP ++   +P LVR+
Sbjct: 251 AVLPRFVADRDPALVRL 267


>gi|146282765|ref|YP_001172918.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145570970|gb|ABP80076.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501]
          Length = 318

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 116/250 (46%), Gaps = 10/250 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+ AA +  L+ S+++R++  LE  +G +LF R    +         
Sbjct: 9   QLELFIDVLECGSFSAAARRHGLTPSAVARRVDALEAALGCQLFSRSTHAVRAMPAALAF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L   + E       P G++RI      G+  L   L EFL  YP + IQL
Sbjct: 69  AERARRIVQELHLARAEATSLDSAPEGRIRIDAPAPFGRRHLAPALAEFLQAYPGVDIQL 128

Query: 127 ILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L +  +D+  ++    D  +R+  P+  + L+   L  +     A+P YL+    PL+ 
Sbjct: 129 RLIDSFVDLHGEHLGEVDLVLRI-GPLADTRLVATPLAPMVRIVCASPAYLERRGVPLTP 187

Query: 184 QELDKHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++L +H+ + +  L P     F  N  + + RP G  R+     N+  +++   + G GI
Sbjct: 188 EQLPEHDGLDWDALAPPHAWRFERNGRSQLLRP-GRLRMVA---NNAEALLTGALAGLGI 243

Query: 242 ALLPDYIVKD 251
           A LP +++ +
Sbjct: 244 AHLPTWLISE 253


>gi|187928444|ref|YP_001898931.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725334|gb|ACD26499.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 322

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 127/298 (42%), Gaps = 31/298 (10%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AAE+L L +SS+S  +S LE ++G +LF R  R L LT+ G
Sbjct: 6   DWNDWDTFCTVATLGSFTRAAERLGLPKSSVSTAVSRLEGKMGARLFERSTRRLRLTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +     L   + E +  +  ++
Sbjct: 66  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMREHTGLR 125

Query: 124 IQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ +  + ID ++  Y       R P+  S L+ +++  +      AP  L+    PL+
Sbjct: 126 IEVDVAPRQIDPLAQGYDIMLTVPRGPLPDSGLVAQRVFDLRRAVVVAPQLLERL-GPLT 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR-------PIGE----PRISCLQVNSYLSI 231
                 H         P  + D+  L T +        P GE    P    ++ ++    
Sbjct: 185 ------H---------PDQLADWPCLGTSNETEWQFRTPGGETINLPLDFRMRTSNSELR 229

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           MQ  + G G+A +      D   +  L  ++    +P   VY  +P       K+K F
Sbjct: 230 MQAAIAGLGVARITSVFATDLMASGALQEVLTGFQSPPMRVYAVFPGRRLMPAKVKVF 287


>gi|187923419|ref|YP_001895061.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714613|gb|ACD15837.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 309

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 7/201 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F+ AA QL  + S++SRQI  LE  +  +L  R  R + +TE G+++ 
Sbjct: 13  MAVFARVVDAGNFSVAARQLGSTPSTVSRQIKRLEDALATRLLERSTRTVRVTESGAQVV 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++            + + +P GK+ ++      ++++   +  FL  Y ++ +QL+
Sbjct: 73  RFCRDMVSAASGAVDAAGQLAGRPQGKVSVSAPTQFARSVIHPLIAGFLRAYDEVDLQLL 132

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             + D+D   D  D  IRL + P Q   L  R+L  +     A+P YL+    P   ++L
Sbjct: 133 FTDHDVDPLADDVDLVIRLTEHPPQ--GLAGRRLGAVRWLLVASPAYLRERGTPAQPRDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNW 207
            KH  I  G+      +D  W
Sbjct: 191 HKHACIYLGE----TADDNRW 207


>gi|16759134|ref|NP_454751.1| lysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140684|ref|NP_804026.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|289823723|ref|ZP_06543335.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25513084|pir||AH0519 probable lysR-family transcription regulator STY0159 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501424|emb|CAD01296.1| putative lysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29136308|gb|AAO67875.1| putative LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 313

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G   L
Sbjct: 15  LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 74

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +   + H  E  +   Q   + P G LR+         LLQ NL  F+  YPDI++ +
Sbjct: 75  ASIRPALNHIDEAMEHACQSRDI-PGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDI 133

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL
Sbjct: 134 DVNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQEL 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +         +  + ++    R    P  + L VN     +     G+ +  + +
Sbjct: 194 INHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAELTYVFE 252

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 253 QDVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 303


>gi|254438932|ref|ZP_05052426.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198254378|gb|EDY78692.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 293

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 124/283 (43%), Gaps = 16/283 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R+F  VAR GSF+ AA++L +  S++SR+I  LE ++   L  R + G  LT  G 
Sbjct: 3   WDDARIFLAVAREGSFSSAAKRLGVQHSTVSRRIRELEQKLATPLVERKSSGYVLTPAGE 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +  +L + +  +       +G+LR+A   ++   +L      F   YP I++
Sbjct: 63  ELQISALRIEKELLSFEGSVGGQDEDTAGELRVAAIANMASTVLMPMFARFSAAYPKIEL 122

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            + + N  + +S   AD AIR   +P +  +LI  +L T+    Y    Y   C    S 
Sbjct: 123 NIQVTNDSVRLSEREADVAIRQTNQPRE--TLIGTRLTTVASAVYGLRSY---CAAVNSG 177

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q ++K   +   D   +      W      P  +      + +  L+ ++    G G+  
Sbjct: 178 QAVEKWVGVDCCDY-HRTWTKRAW------PQAKHEFYVDETSLTLAALKE---GLGVGF 227

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP ++   +P+L R  E        ++  Y   L+ T ++  F
Sbjct: 228 LPCFLGDIDPDLARFHEPEKQHHLGLWLLYHRDLRTTNRVTLF 270


>gi|170694464|ref|ZP_02885617.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140598|gb|EDT08773.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 278

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 128/279 (45%), Gaps = 19/279 (6%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++   +SR I+ LE  + I+LF R  R ++LTE+G + +         LE         +
Sbjct: 1   MTPPGVSRAIARLEKRLNIRLFSRTTRSVSLTEEGRRFYEQVMPHLAGLEEAAAAAAGGA 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
               GKLRI     + + +L   L  F+  +P+++I+ I  +   D+ MD  D A+R  +
Sbjct: 61  SAVRGKLRINLDPVVYRTILGQQLDAFMDAHPELEIEFIARDSLGDLVMDGFDLAVRFGE 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD--KHNLITFGDLIPKCMEDFN 206
           P ++S+LI RKL+   +   AAP Y+     P   ++L+   H  + F +  P+  + F 
Sbjct: 121 P-KASTLIARKLLDTRIVTVAAPSYIARWGRPSRPEDLEGRSHRCLEFRN--PETGKPFQ 177

Query: 207 WLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGSGIA----LLPDYIVKDNPNLVR 257
           W     R     RI       L VN   +++  C+ GSGIA    L  + ++ D   L+ 
Sbjct: 178 WEFHRKR----KRIVVDTQGRLTVNDPGALLNACLAGSGIAQMLLLGAEPLIADG-RLIN 232

Query: 258 IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  + +   + +Y  Y        K +AF +F+    R+
Sbjct: 233 LFPEWVDERYPLYVYYASRHHVPAKTRAFLDFVIELTRN 271


>gi|104781984|ref|YP_608482.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110971|emb|CAK15689.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 301

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 122/255 (47%), Gaps = 11/255 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF     +  F+ AA +L ++ SS++R +  LE E+G  L  R  R ++LTE G+  +
Sbjct: 7   IKVFMATVEALGFSAAARKLGVATSSVTRLVDALENELGAALLNRSTRQVSLTEAGAGYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   L      + +   +P G LR+   ++ G+ ++  +L  FL  +P +++ + 
Sbjct: 67  QRARDILEALAEADARVADRGEEPVGVLRLCLPVEFGRRVIAPHLGAFLARHPGMELDID 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186
           L ++  D+     D  IRL +P  S  L+ R L        A+P YL   R PL   ++L
Sbjct: 127 LSDRFDDLLDGRYDMTIRLGEPAPSDELVCRPLGRFERWLVASPAYLAQ-RPPLEHPRQL 185

Query: 187 DKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
                + F       P  +     +  +D  +  P  S    N+ L + +  + GSG+AL
Sbjct: 186 ADCACLRFRYGQSARPWRLRRGEQVLELD--VAGPLRS---ANADL-LREAAMAGSGVAL 239

Query: 244 LPDYIVKDNPNLVRI 258
           L D++V+++    R+
Sbjct: 240 LADWLVREDVQAGRL 254


>gi|315126045|ref|YP_004068048.1| LysR transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315014559|gb|ADT67897.1| LysR transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 305

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 132/296 (44%), Gaps = 12/296 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  +   GS T AA+QL L+++  S  +  LET++ + L  R  R +
Sbjct: 1   MKVSFEQLKSMVVFAQIVEQGSLTAAAKQLGLTRAVASYHLKKLETQLEVTLLNRSTRTM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   +     +  +      +++    +P G L+I+  +++G  L+   +  F  
Sbjct: 61  ALTEAGMAYYERCRVITEQANAANQQIENIKSEPQGLLKISCPVNVGMQLIVPAINTFKR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I I L L +  +DI     D AIR    ++ S+L   KL T+      AP Y  + 
Sbjct: 121 QYPKIDIDLQLTDDVVDIIKHGFDFAIR-GVALRDSNLQATKLTTMSTCICGAPDYFAHF 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +P +  EL KH  + +  L  K +     L    + +       L  N+  +   +   
Sbjct: 180 GKPTTPDELVKHQWVVY-QLGSKTLT----LQKEGKKVDITMQGSLSTNNAAARTAFVEA 234

Query: 238 GSGIALLPDYIV--KDNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  +P Y    K    L++ I++D  +    +Y  +P     + KL+ F +++
Sbjct: 235 GHGLGRIPLYDAWPKVQAGLLQIILDDYKSKDIELYGVFPPGAAGSKKLRLFIDYL 290


>gi|307320054|ref|ZP_07599475.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306894269|gb|EFN25034.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 323

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 127/290 (43%), Gaps = 16/290 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF    R  +FT AA +L ++Q+++S  I GLE ++G+ LF+R  R + LTE G K H  
Sbjct: 16  VFEAAGRHQNFTRAASELGMTQAAVSYAIRGLENQLGVPLFHRVHRAVQLTEAGEKFHAD 75

Query: 70  TSEVYHKLETTQIELQESSVKPSGK---LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            S     +   +I+     ++  G+   + +A +       +   L       P+I +++
Sbjct: 76  VS-----VGLARIQKSAEDIRAKGRETNVTLAASTAFASMWMLPRLARLREDLPEIDLRI 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +D+D+  +     IR   P          L    + A A P Y++    P +  +L
Sbjct: 131 QTSVRDLDLDDEPIPLGIRGGDPSHWPRYHAAVLADEVIQAVATPAYIETHGLPATPADL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +HNLI   + + +  +   W A+     P    R   L +N Y+ ++Q  + G GIAL 
Sbjct: 191 IRHNLIHLEEPVRRACDWTEWFASAGLAYPTQGKR---LAINDYVLVIQAVLAGEGIALG 247

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +++      +  LV +   V+      Y  +P + +   + +  R+++ 
Sbjct: 248 WEHLTARQVRSGALVPVGGHVLRTGQAFYVVWPRSRELNSQARRIRDWLL 297


>gi|296115306|ref|ZP_06833945.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978129|gb|EFG84868.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 300

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 123/285 (43%), Gaps = 6/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L     VAR+ SFT AA +L +SQS++S  I  LE  + ++L  R  R +T T  G +
Sbjct: 7   NDLTALVAVARAKSFTKAAAKLGVSQSALSHTIRLLEERLDLRLLTRTTRSVTPTTAGQQ 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    ++E     L E   + SG LRI    D    ++   +KEF+  YP I ++
Sbjct: 67  LISGIAPHLDQIENQLTSLGELRNQESGNLRITMPDDALAYVVLPKIKEFVQKYPKINVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            + D K IDI  +  D AIRL + I            I      +P Y     +P   ++
Sbjct: 127 FVADLKLIDIFSEDFDGAIRLGENITKEMTSVPITPDIRFVVAGSPEYFSKNPKPKHPKD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN +T    +P     + W      + I       L  NS   I   C+ G G+A +
Sbjct: 187 LLNHNCLTL--RLPTHGRIYAWEFEKKGKDITVKVEGSLIFNSIFPIRDACLEGLGLAHM 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P+ + +       L++++ED        + C+P   +N   L  F
Sbjct: 245 PEMVARKYIQEGRLLQVLEDWCPYWSGYHLCFPRHHENVAPLSLF 289


>gi|238755474|ref|ZP_04616814.1| Transcriptional regulator [Yersinia ruckeri ATCC 29473]
 gi|238706315|gb|EEP98692.1| Transcriptional regulator [Yersinia ruckeri ATCC 29473]
          Length = 303

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 15/306 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V  SGS T AA Q + + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKITLEELQAFISVVDSGSITAAAGQRNQTTSGISRALSRLEQKLETTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G        ++   ++  + ++    +KP+G+LRI   +   Q+++   +  F   YP
Sbjct: 61  GEGELFLAHARQIIDAVDDAEEQIALRRLKPAGRLRINAAVPFMQHVIVPMIGGFRACYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIRL   ++ S++  R+L    +   A+P Y++    P
Sbjct: 121 QIDLELNTDDLNIDLLEQRTDIAIRL-GVLRDSTIHARRLGASRLRILASPEYIQRHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            +I+EL +H+L+ F        E  N  A    P G   I   +  +S  ++    + G 
Sbjct: 180 KTIEELSEHSLLGFTQ-----PESLNQWALPYLPGGGSSIVPTVAASSGETLRHLALRGE 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVIT-------PSFTVYF-CYPEALKNTGKLKAFRNFIF 291
           GI  L D++ +++  + R++E ++        P   VY+   P   + T  L      I 
Sbjct: 235 GIVELSDFMTREDQLVGRLVEVLVEQTLESWQPINAVYYRNTPLVARITCFLDYLTEQIR 294

Query: 292 LKARDW 297
           ++ R W
Sbjct: 295 IQGRHW 300


>gi|167617734|ref|ZP_02386365.1| glycine cleavage system transcriptional activator [Burkholderia
           thailandensis Bt4]
          Length = 313

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 132/289 (45%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA +L ++  ++S Q+  LE E+G+ LF RH + L LT+ G +
Sbjct: 3   NALRVFEAAARHESFSRAANELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGGR 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S      +L ++T        +   +  F+  +P+I ++
Sbjct: 63  YAQQVRAALALLADATREIRASDR--DKRLAVSTLPSFAARWITPRIGPFIEQHPEIDLE 120

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 121 LRASDTLVDFARDDVDVAIRFGYGVYPGLYVE-PLLDETFFPVCAP-TLNGGVLPETPAD 178

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 179 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 233

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++AFR ++ 
Sbjct: 234 RSLAMPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLL 282


>gi|167033359|ref|YP_001668590.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859847|gb|ABY98254.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 301

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 29/256 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F     +  F+ AA +L L+ SS++R +  LET +G  L  R  R ++LTE G++ +
Sbjct: 7   MKMFVATVDAQGFSAAARRLGLATSSVTRLVDALETALGATLLNRSTRQVSLTEAGARYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                ++  L+     + +   +P G LR+   ++ G+ ++  +L  FL  +P +++ + 
Sbjct: 67  ERARGIFEALDEADASVADRGEEPVGVLRLCLPVEFGRRVIAPHLGPFLARHPALELDID 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186
           L ++  D+     D ++RL  P  +  L+ R+L        A+P YL   REPL   ++L
Sbjct: 127 LSDRLDDLLDGRYDLSVRLGDPSPNDELVCRQLGRFQRWLVASPAYLAG-REPLQHPRQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------------MQY 234
            +H  + F                  RP    R++C Q +  L +             + 
Sbjct: 186 LEHACLRF------------RYGQKARPW---RLACGQESLELDVSGPLRSANADMLRET 230

Query: 235 CVLGSGIALLPDYIVK 250
            + GSGIALL D++V+
Sbjct: 231 ALAGSGIALLADWLVR 246


>gi|40068457|gb|AAR38855.1| LysR family transcriptional regulator [Pseudomonas agarici]
          Length = 261

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 102/205 (49%), Gaps = 1/205 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +      +GSF+ A+ +L +   ++SR+++ LE  +G++L  R  R LTLTE G  
Sbjct: 5   EAMAILVATVEAGSFSAASRKLSVPLPTVSRKLAALEEHLGVRLLMRSTRSLTLTEAGLT 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   ++  ++   +         P G+L +   +  G+  L   + +FL  +P I I+
Sbjct: 65  YLQSCKQILDQVTEAERSASGEYTTPRGELVVTAPVVFGRLHLLPIINDFLASFPQINIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LIL +K + +  D+ D A+R+ + +  S ++  ++ T+     A+P YL +  +P    +
Sbjct: 125 LILSDKTMHLVDDHIDAAVRVGR-LPDSGMMATQVGTVCRVVCASPEYLASHGKPTHPND 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT 210
           L +H+ + F  L    +  F   AT
Sbjct: 184 LIEHSCVNFEGLPSGALWTFAPAAT 208


>gi|327482845|gb|AEA86155.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166]
          Length = 300

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 137/280 (48%), Gaps = 16/280 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D++  F  V  SGS + AAEQL  + S +SR +S LE ++ + L  R  R L LT
Sbjct: 1   MKTNLDEMLAFVSVVDSGSISAAAEQLEQTASGVSRALSRLEDKLTVTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E  + ++      P+G+LR+ T      +++   + +F   YP
Sbjct: 61  EEGEAFLAQARRILASVEEAEEQMALRRQAPAGRLRVNTASPFMLHVIVPLIGDFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D++ +D+     D AIR+  P+  SSL  R L        A+P YL     P
Sbjct: 121 LIELELHSDDRIVDLLERRIDLAIRI-GPLPDSSLHARPLCHTTRRVLASPAYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RIS-CLQVNSYLSIMQYCVLG 238
             +++L +H+LI F +  P  + D+     +   +GE  RI+  L+ +S  ++ +  + G
Sbjct: 180 QQVEDLAEHSLIGFTE--PDRLNDW----PLRHALGESWRINPALRASSGDTVRELALAG 233

Query: 239 SGIALLPDYIV---KDNPNLVRIME----DVITPSFTVYF 271
            GIA L D++    +    LV ++     DV  P   VY+
Sbjct: 234 EGIASLSDFMTGRDRQRGELVEVLAAQRVDVRQPINAVYY 273


>gi|251790172|ref|YP_003004893.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538793|gb|ACT07414.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 311

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 111/250 (44%), Gaps = 15/250 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  + +F+  A +  +S S +SR I  +E  +G +LFYR+ R +  TE G    
Sbjct: 12  LLIFIDVYETQNFSVVARREGISASQVSRVIHQMEDALGQQLFYRNTRAIIPTESGHLFI 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  + EL E +++PSG +RI   +  GQ  +   L      YP + I L 
Sbjct: 72  GYARAMTGSLEEARRELNERTLEPSGMVRINAPVFFGQRHVAPALAGLTERYPRLSIDLT 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  ID   + AD   R+   +  SS   R       H  A+P Y++    P S +E  
Sbjct: 132 LTDDYIDPHREQADVIFRI-GVLTDSSFHARVFGQQFYHLAASPDYIRRHGIPESPEEFA 190

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGSGI 241
           +H  + + G   P       WL    R  GE     P    +  N+  +++   + G GI
Sbjct: 191 RHKCLVYRGSSGPN-----RWLL---RRHGEEWVHYPVSPLMSSNNAETLLIAALGGMGI 242

Query: 242 ALLPDYIVKD 251
            L PD+++ D
Sbjct: 243 VLFPDWLIGD 252


>gi|239813476|ref|YP_002942386.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800053|gb|ACS17120.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 314

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 119/287 (41%), Gaps = 29/287 (10%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA  G  T AA+   ++ + + R++  LE  +G+KL  R  R +TLT +GS  
Sbjct: 6   QLESFVSVATRGGLTAAAKAEGVAPAIMGRRLDALEARLGVKLLVRTTRRITLTHEGSAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +    +  +    VK SG LR+      G+  +   +  F  L+P++ I L
Sbjct: 66  LEDCQRLLTEFANAEASVSAGGVKASGHLRVTAPAGFGRRHVAPLVPRFHALHPEVTISL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DCA+R+   +  SSL+  +L        A P +++    P    EL
Sbjct: 126 NLSDRVVDVRGESFDCAVRVGD-MPDSSLVSVRLADNRRRCVATPEFVRRHGMPRHPNEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-----------------RPIGEPRISCLQVNSYL 229
            +   +T   L     +   W   +                  RP G    S  QV    
Sbjct: 185 SRFACLT---LSSDASQTRGWAFRIPRAPAAAGEEAGEELIYLRPEGPLDCSDGQV---- 237

Query: 230 SIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            +  +C+ G GIA    + V+   D   LV ++++   P   +Y  +
Sbjct: 238 -LHDWCLAGHGIAWRSTWEVEAEIDAGLLVPLLDEFAAPPNGIYAVF 283


>gi|209549387|ref|YP_002281304.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535143|gb|ACI55078.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 304

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 130/294 (44%), Gaps = 11/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+   V  +GS +  + +L+    S+SR+++ LE  +G  L  R +R L LT+ G  
Sbjct: 5   EAMRILLAVVDAGSISAGSRRLNAPLPSVSRKVAELERHLGANLVVRTSRNLQLTDAGRD 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++   ++  +         P G L I   I+ G   +      F+  YP++ ++
Sbjct: 65  YVDAARKIIADIDEAERRASGEYQTPRGALTITMPIEYGSRYVLPVALSFMDKYPEVSLK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+  ++ +D+  +  D AIRL   +  SSL   K     +   A+P YL    EP    +
Sbjct: 125 LLSLDRTVDLVSEQVDIAIRLGD-LADSSLHAVKTGEFRLLTCASPAYLARHGEPQRPGD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L   + I F          F W   ++ +P+     + L+VN+  + +   V G+GIA L
Sbjct: 184 LIDRDGIFFNK------PAFFWTFDIEGKPMEAMPRNRLEVNTAANCVAAAVDGAGIARL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            DY V D   +  LV I+ D   P   ++  Y        K++AF ++   + R
Sbjct: 238 FDYQVPDQLASGALVPILRDFDGPPQPIHIVYARQGILALKVRAFVDWALPRLR 291


>gi|170724965|ref|YP_001758991.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810312|gb|ACA84896.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 305

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F V+A  GSFT AAE L  S+S +S+Q+  LE  +G+ L  R  R   LTEQG    
Sbjct: 10  IRAFTVIAEQGSFTQAAEVLGCSRSHLSKQLLQLENLLGVSLITRTTRAQRLTEQGRFFF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQL 126
                    ++       +++ +  G + I      +G+ ++   + +F+  YPDI + L
Sbjct: 70  DSCQAALESIDQAVAVTVDNAQRLQGHININCVGGIIGEEIVTALVNDFISQYPDISVHL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+ +D  D   R+ + ++ S+++ RKL++I     A+P YL     P   ++L
Sbjct: 130 DFSSPRVDLVVDEFDLVFRMGE-LEDSAIVARKLMSIENMTMASPQYLAAHGYPNHPKDL 188

Query: 187 DKHNLIT 193
            +H  IT
Sbjct: 189 KEHLCIT 195


>gi|329296359|ref|ZP_08253695.1| DNA-binding transcriptional activator GcvA [Plautia stali symbiont]
          Length = 305

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 129/295 (43%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F L YP I ++
Sbjct: 69  YYLDIKEIFSALNDATRKLQARSAK--GALTVSLLPSFAIQWLVPRLSSFNLAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++D +   D  D AI   +      L   KL   ++    +P  L     PL    
Sbjct: 127 IQAVDRDEEKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTG-DNPLK--- 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
               +L  F  L      D  W + + R +G   I+  Q    +    ++Q  + G G+A
Sbjct: 182 -SPADLAHFTLLHDASRRD--WQSYI-RQLGLQHINVQQGPIFSHSAMVLQAAIHGQGVA 237

Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 238 LANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILEKA 292


>gi|261856307|ref|YP_003263590.1| LysR family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261836776|gb|ACX96543.1| transcriptional regulator, LysR family [Halothiobacillus
           neapolitanus c2]
          Length = 294

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 26/274 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  ++  F  VA++GSF+ AA+QLHL+Q ++S++++ LE++VG  LF R AR + LTE 
Sbjct: 6   IDHQQILAFLSVAQTGSFSAAAQQLHLTQPAVSKRVALLESQVGAALFERLARQVVLTEF 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++      +V   ++       +SS   SG+L IA +  +G +LL   L+ F   YPD+
Sbjct: 66  GAQFLPAAQKVRQAMDDLAAVTLDSSRPLSGRLAIALSHYVGLHLLPSVLETFSRRYPDV 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLR---------KPIQSSSLIQRKLVTIHMHAYAAPHY 173
            + L   + +  I    A  ++RL            ++++ L Q KLV +    +A  H 
Sbjct: 126 VLDLRFMDSEAAIDA-VAQGSVRLAYGTLGHSAPSTVETTPLWQEKLVPLVALRHAEQHT 184

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFN-WLATVD-RPIGEPRISCLQVNSYLSI 231
                   ++ EL +H  +          +  + WL  +  RP     ++ ++VN   SI
Sbjct: 185 -------PTLHELAQHLPVIAPAAHTSTRQSIDIWLNALQIRP-----LAVIEVNQLDSI 232

Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITP 265
                 G G  +LP+ +   N +L R+ +  + P
Sbjct: 233 ALLVGTGIGWGVLPETL--QNSDLARLPDTALAP 264


>gi|118593494|ref|ZP_01550874.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118433973|gb|EAV40631.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 305

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 114/250 (45%), Gaps = 11/250 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  +AR  S   AA  + L  ++++R+++ LE  VG +L +R AR   LT  G  
Sbjct: 3   DDIALFVHIARHRSLAKAAAHMGLPAATVTRRLAKLEETVGTQLVFRSARKFELTGAGEA 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +++    ETT   L        G L+ A   ++   +L+     FL  YP+I++ 
Sbjct: 63  YFEAFADLVQNAETTLDGLSADLHGLRGALKAAAPTNISIGILEPMWSGFLKAYPEIRLT 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L N++ D+     D A+R   P     L Q++L  +     A+P YL+    P + Q+
Sbjct: 123 LVLSNENKDLLEHKVDIALR-AGPQTDERLYQKRLGVVATVLVASPAYLEEAGAPETPQQ 181

Query: 186 LDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +H ++    L P+      +   L TV      P  + + V+      Q    G GIA
Sbjct: 182 ISEHKVVRVSTL-PQWQLTHRETGALETV------PLDARVVVDDISLARQLAGDGHGIA 234

Query: 243 LLPDYIVKDN 252
           LLP   + D+
Sbjct: 235 LLPVSEISDD 244


>gi|83718916|ref|YP_441149.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167617974|ref|ZP_02386605.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257140189|ref|ZP_05588451.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83652741|gb|ABC36804.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 310

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     SGK+R+++T D G+N L   L EF   YPD+   + 
Sbjct: 67  NCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRNQLLDWLDEFNARYPDVTFSVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R L        A+P ++     P      D
Sbjct: 127 ASDSSSNLWQDEIDLAIRFAAP-PDGALIARPLAANRRVLCASPAFVDKYGTP-----KD 180

Query: 188 KHNLITF 194
            H+L  F
Sbjct: 181 PHDLARF 187


>gi|325292234|ref|YP_004278098.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325060087|gb|ADY63778.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 298

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 143/308 (46%), Gaps = 30/308 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + L  F +VA   +F   A++L +++S++S+ I  LE  +GI L  R  R ++LT
Sbjct: 1   MNVDLNALSTFCMVAEERNFRATADRLGVTRSAVSQTIRRLEETMGIALVQRTTRSVSLT 60

Query: 61  EQGSKLHR-VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLL 118
           E G +L+  V+  + + ++ TQ     S   P G+LR+A +  + +  L G L   F  +
Sbjct: 61  EAGQQLYADVSPSISNLMQATQAASSLSGT-PRGQLRLAVS-SIAERFLSGPLLARFAEI 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPH 172
           +P++Q+ +++ +++ DI  ++ D  +RL        LI + ++ + +       A  +P 
Sbjct: 119 HPEVQLDIVVTDEEFDIVAEHYDAGVRL------GELIAQDMIAVPVSGPQRQLAVCSPQ 172

Query: 173 YLKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSY 228
           Y      P   +EL  H  I +    D+ P     + W  A   R            N  
Sbjct: 173 YRDRVTLPTQPRELIHHKCIGWRPRPDVAP-----YRWEFAENGREFAVAVQPDFTTNDM 227

Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLK 284
             +++    G+GI    +   +   ++  LV ++ED  +P+F   Y  YP       KL+
Sbjct: 228 QLMIKLACAGAGITFGMEETFRPYLESGQLVSMLED-HSPTFAGFYLYYPNRRHLAPKLR 286

Query: 285 AFRNFIFL 292
           AF + + L
Sbjct: 287 AFIDHVRL 294


>gi|317048088|ref|YP_004115736.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949705|gb|ADU69180.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 297

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 85/189 (44%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            +L +   VAR GSF+ AA +L +S S+++  I+ LE  +G++LF R  R + LTE G +
Sbjct: 7   SELEIMLAVARRGSFSGAASELEISPSAVTNAIAALEKRLGVRLFNRTTRSVGLTEAGRR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +     + +   E+      P+G LR+    +         L  FL  YP I+ +
Sbjct: 67  FTLKIAPAVEVIRSASEEIASQPADPAGTLRLNVPPESCALWYDEILLPFLARYPRIRAE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    + +DI     D  IRL   I +  +  +    + M   A+P YL  C  P   Q 
Sbjct: 127 IHSQKEKVDIVAAGFDAGIRLADDIPADMIAVKLTPPLRMILVASPDYLSRCGTPEQPQA 186

Query: 186 LDKHNLITF 194
           L +H  I  
Sbjct: 187 LHEHACICM 195


>gi|115376171|ref|ZP_01463414.1| transcription regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366821|gb|EAU65813.1| transcription regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 299

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 139/287 (48%), Gaps = 15/287 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  +GS + AA+QL LS +++SR ++ LE EV   L  R  R +T+T  G + 
Sbjct: 6   RMATFVRVIEAGSLSAAAKQLRLSTAAVSRHVTALEQEVATPLLARTTRRMTVTVAGQQY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN--LKEFLLLYPDIQI 124
           +     V  +++  Q   ++  ++  G LRI+  + +G   L G   L+  +  +P +++
Sbjct: 66  YERCLRVLREVDEAQSIGRDGRLE--GLLRISLPVTVG--FLSGASLLRSLVGKHPGLRL 121

Query: 125 QLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            + L+++ ID+ ++  D AIR+  KP  S+ ++ R L   H    A+P Y++   +P + 
Sbjct: 122 DVRLEDRLIDLVLEDVDVAIRVAAKPPLSTEIVARPLSRWHRVVVASPAYVRRHGKPKTS 181

Query: 184 QELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             L  H  I+   D   +     N  AT  R   + R SC   N+   + +  + G G+A
Sbjct: 182 AALAAHESISPVRDAATEVWTLLNGAATA-RVRMKVRCSC---NAGHLLRELALDGLGVA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LLP + V     N  L +++    +    VY  Y  + ++  +++  
Sbjct: 238 LLPHWFVAADLQNKRLRQLLPGWQSEPVEVYALYRASRRHEPRVRVL 284


>gi|83718577|ref|YP_440941.1| DNA-binding transcriptional activator GcvA [Burkholderia
           thailandensis E264]
 gi|83652402|gb|ABC36465.1| glycine cleavage system transcriptional activator [Burkholderia
           thailandensis E264]
          Length = 320

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 132/289 (45%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA +L ++  ++S Q+  LE E+G+ LF RH + L LT+ G +
Sbjct: 10  NALRVFEAAARHESFSRAANELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGGR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S      +L ++T        +   +  F+  +P+I ++
Sbjct: 70  YAQQVRAALALLADATREIRASDR--DKRLAVSTLPSFAARWITPRIGPFIEQHPEIDLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 128 LRASDTLVDFARDDVDVAIRFGYGVYPGLYVE-PLLDETFFPVCAP-TLNGGVLPETPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 186 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 240

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++AFR ++ 
Sbjct: 241 RSLAMPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLL 289


>gi|325520452|gb|EGC99556.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia sp. TJI49]
          Length = 297

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 126/293 (43%), Gaps = 17/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+ 
Sbjct: 12  NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S+V   L     +  +  VK    L I+TT       L   L +F   +P   ++
Sbjct: 72  YF---SDVQRALNAIA-DATDRLVKRRATLTISTTPSFASKWLIPRLAQFTDAHPGFDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D +      D  D AIR  KP     L    L  + + A  +P  L     P   + 
Sbjct: 128 VIADQQLATFRHDGVDLAIRYGKPPFGKHLAAHALFPLDVCAVCSPALLAEHASP---RA 184

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    DL P       +LA +  P+       L+ N     +   V G GIAL 
Sbjct: 185 LAGHVLLHDAHDLWPA------FLAALPEPVDVDPHKGLRFNQTSLAIDAAVAGQGIALA 238

Query: 245 PDYIVKDNPNLVRIME--DVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D +V+ +    R+ +  D   P S   Y  YP   ++   +   R ++  +A
Sbjct: 239 TDPLVERDIAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDGIAVMREWMIRQA 291


>gi|262043221|ref|ZP_06016355.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039403|gb|EEW40540.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 342

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 128/291 (43%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R +  +  +GS + AA Q+  +Q+++SR++  LE  +G+KL  R    + LT+ G + +
Sbjct: 44  MRTYIRIVEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKLILRTTHAMKLTDDGERCY 103

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +V       + +L+ +  +P G LR+      GQ  L   L  FL  +P + ++ +
Sbjct: 104 RHARQVVDAWLALEDDLRIADDRPVGVLRVRAPHAFGQQQLLAPLVAFLQRHPQLSVEWM 163

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D   D  DCAIR+   +  ++ +   L  +     A+P  L       S++ L 
Sbjct: 164 LNDNTVDFLSDNIDCAIRVGAEVDPAT-VSVLLAEVPRCVVASPELLAKYPPLTSLEALS 222

Query: 188 KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               I        ++  +       ++T   P       CL  +S        + G G+A
Sbjct: 223 GLPWIAINTFYQHEVRLRHQASGQIVSTAITP-------CLSTDSLYVARNTALAGLGVA 275

Query: 243 LLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  + V ++    R++E        S  V+  YP A   T +L+ F + +
Sbjct: 276 MVSSWTVMEDIAAGRLIELFPQWRPASLPVHLVYPWARYYTTRLRKFLDLM 326


>gi|238752628|ref|ZP_04614100.1| LysR-family regulatory protein [Yersinia rohdei ATCC 43380]
 gi|238709142|gb|EEQ01388.1| LysR-family regulatory protein [Yersinia rohdei ATCC 43380]
          Length = 310

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 132/302 (43%), Gaps = 31/302 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  +   GSF+ AAE++ + ++++S  +  LE ++G++L  R  R + +T +G+  +
Sbjct: 7   MQIFVRIVELGSFSRAAEKMQIPRATVSHTLKRLEQKLGVRLLVRTTRQVNITAEGTMYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++    E          ++P GK+RI     L +N++   L +F   YP I++ L 
Sbjct: 67  QRCLQLLSAFEEANSLFSHQQLEPEGKVRIDMPHSLARNVVIPALNDFYQRYPRIKLILG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  ID+  +  DC +R   P     L+ R +        A+P YL     P S+ EL 
Sbjct: 127 ANDGTIDLLREGVDCVLRAWLP-HDEQLVARNIGQQPQITCASPAYLATYGTPTSLDELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSI------MQYCVLG 238
           KH  + +          F+ L   D P+    + ++   ++   LS+      +   V G
Sbjct: 186 KHQAVGY----------FSQLTGRDYPLEFMYQGKVESRELPGILSVSGADAYIAAGVAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+   P   +        L+ ++ D   P   ++  +P      G+  A R  + +   
Sbjct: 236 LGLIQAPTPGIHQQLLQGELIEVLADTPPPVMPLFIMFP-----PGRFLAPRVRVLI--- 287

Query: 296 DW 297
           DW
Sbjct: 288 DW 289


>gi|259418461|ref|ZP_05742379.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259345856|gb|EEW57700.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 311

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 119/246 (48%), Gaps = 8/246 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD + VF  VARSGS + AA  L +  +++SR++  LE  +G  LF RH  G  LTE+G+
Sbjct: 15  WDDVSVFLAVARSGSLSGAASALSIGLATVSRRVQRLEACLGDPLFLRHHTGYRLTEEGA 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L     E+    +     L E   + SG +R+AT  +L   L+   L      +P + +
Sbjct: 75  ALVERAEEMEAAAQAFGSGLPEEP-EVSGTVRLATAENLATALILPELPRLRRAHPRLTL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D   +++    AD A+R+ +P +    +QR + T+    Y+A  Y++       + 
Sbjct: 134 EIATDIATVNLHRRDADIALRMTRPDRGHVSVQR-IGTLGYGLYSARSYMEGHTGGFEV- 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++  LI + +     +    W   V+R +   R   +   S  + +  C  G G+A+L
Sbjct: 192 DLERDELIAWAEGYGH-LPAAQW---VERAL-RGRAPAVVTTSLAAQVTGCASGLGLAVL 246

Query: 245 PDYIVK 250
           P ++ +
Sbjct: 247 PHFLAQ 252


>gi|186471829|ref|YP_001863147.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184198138|gb|ACC76101.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 303

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 3/201 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A   SFT AA    ++ +++SR ++ LE  +G++LF R  R + LT+ G +  
Sbjct: 13  IELFCLAAELESFTMAAAAASVTPAAVSRSVARLEERLGVRLFVRTTRQIRLTDAGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  ++L   + E       PSG LRI+         +   L EF  LYP++ ++  
Sbjct: 73  EQCRLALNQLADAEREATGQQSTPSGVLRISMPTPYSHYRVLPLLAEFRALYPEVTVETH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID + +  D AIR R P   S+LI RKL    +   A+P YLK+  +  +  +L 
Sbjct: 133 LSNRNIDFADEGFDLAIRGRAP-DDSALIARKLEDAELVVVASPAYLKSAGKLDTPDDLI 191

Query: 188 KHNLITFGDLIPKCMEDFNWL 208
            H  I F   +P    +  W+
Sbjct: 192 HHECIQFA--LPSTGRNIPWI 210


>gi|262164251|ref|ZP_06031989.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|262026631|gb|EEY45298.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 302

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 128/305 (41%), Gaps = 24/305 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +  R F  V   GSFT AA  L L+Q  IS+ +S LE +VG KL +R  R + +T
Sbjct: 1   MELDLNAARCFVKVVELGSFTQAANLLGLTQPGISKAVSRLEAQVGAKLIHRSTRQVRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    + +  E    EL+ S   P G L+++    L  +L+   +K     YP
Sbjct: 61  EDGQLFMKRIQPLIYGFEEAHNELKFSKTTPVGCLKLSAPSALSHSLMMPIVKLLTERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I+L L ++   +  +  D  +R    I    L+   L        A+P YL     P
Sbjct: 121 DLRIELSLTDQKAHVFDEGYDAVLRF-GSIDDERLVAFALQDAEWVTVASPEYLAKQGIP 179

Query: 181 LSIQELDKHNLITFG-----DLIP-------KCMEDFNWLATVDRPIGEPRI-SCLQVNS 227
               EL   N +        + +P       K +E    +  V    G+P I + LQ   
Sbjct: 180 HHPDELRNFNCLHVKPRGQTNTLPWRFRIDGKGIEYRQLVGNVCFDHGDPLIDAALQGLG 239

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            + +++ CV+   +A         N  L  ++ D    + + +  YP + + + KL   R
Sbjct: 240 AVQVLR-CVIADKLA---------NGELKEVLTDFRPQAHSFHLLYPPSRQRSAKLTVLR 289

Query: 288 NFIFL 292
             + L
Sbjct: 290 EALIL 294


>gi|254713072|ref|ZP_05174883.1| LysR family transcriptional regulator [Brucella ceti M644/93/1]
 gi|254716575|ref|ZP_05178386.1| LysR family transcriptional regulator [Brucella ceti M13/05/1]
 gi|261218372|ref|ZP_05932653.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320779|ref|ZP_05959976.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|260923461|gb|EEX90029.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293469|gb|EEX96965.1| transcriptional regulator [Brucella ceti M644/93/1]
          Length = 304

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 134/296 (45%), Gaps = 11/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 60  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 120 DIEVRLRLSDHEVDIMSEGVDVAFKL-GVLENSNLRMRGIMNCERVVCAAPQYLERHGTP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            S + L  D+H+ +      P   E + WL      + +  ++     +    + Q+ + 
Sbjct: 179 QSPEALLSDRHHCLLL--RFPGSKE-YYWLLQTPEGLRKFEVTGPYDADDGDVLTQWALG 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI   P + VK+   +  L  I++        +   YP       K++   +F+
Sbjct: 236 GRGIINKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFM 291


>gi|194291375|ref|YP_002007282.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225279|emb|CAQ71221.1| Putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 300

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 126/294 (42%), Gaps = 15/294 (5%)

Query: 1   MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS   DKLR    F  +   GS T AA  L  S  ++ R ++ LE E+ ++L  R  R L
Sbjct: 1   MSGAMDKLRAMQTFVRIVDEGSLTAAAASLRTSLPAVVRTLAALEAELQVRLLNRTTRRL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT +G         +   ++  +  L ES V+PSG+L +  ++  GQ  +   +  F+ 
Sbjct: 61  SLTAEGRSYLDGCRRILANIDEVEAGLTESHVEPSGQLTLTASVLFGQMYVAPAVTRFVQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP ++ ++   ++ +++  +  D  +R+  P+  S+L+ + +  I     A P YL+  
Sbjct: 121 RYPRVRCRMEFTDRVVNLLEEDLDVGVRI-GPLADSTLVAQSVGRIRRVVVATPAYLRKH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYC 235
             P    EL   N + F           +W +  D  R    P    L+ N     +  C
Sbjct: 180 GVPRHPDELAGANCLRF------TGNHAHWWSFRDGEREFHVPVSGNLEFNQTAPAVAAC 233

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              +G      Y V    +   L  ++ED   P++ +   YP A     + +AF
Sbjct: 234 AADAGFGHFLSYQVAQLVEARKLRIVLEDFELPAWPLSLIYPHARLLPARTRAF 287


>gi|307309318|ref|ZP_07588981.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306900187|gb|EFN30805.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 323

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 127/290 (43%), Gaps = 16/290 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF    R  +FT AA +L ++Q+++S  I GLE ++G+ LF+R  R + LTE G K H  
Sbjct: 16  VFEAAGRHQNFTRAASELGMTQAAVSYAIRGLENQLGVPLFHRVHRAVQLTEAGEKFHAD 75

Query: 70  TSEVYHKLETTQIELQESSVKPSGK---LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            S     +   +I+     ++  G+   + +A +       +   L       P+I +++
Sbjct: 76  VS-----VGLARIQKSAEDIRAKGRETNVTLAASTAFASMWMLPRLARLREDLPEIDLRI 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +D+D+  +     IR   P          L    + A A P Y++    P +  +L
Sbjct: 131 QTSVRDLDLDDEPIPLGIRGGDPSHWPRYHAAVLADEVIQAVATPAYIETHGLPATPADL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +HNLI   + + +  +   W A+     P    R   L +N Y+ ++Q  + G GIAL 
Sbjct: 191 IRHNLIHLEEPVRRACDWTEWFASAGLAYPTQGKR---LAINDYVLVIQAVLAGEGIALG 247

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +++      +  LV +   V+      Y  +P + +   + +  R+++ 
Sbjct: 248 WEHLTARQVRSGALVPVGGHVLRTGQAFYVVWPRSRELNSQARRIRDWLL 297


>gi|300718142|ref|YP_003742945.1| glycine cleavage system transcriptional activator [Erwinia
           billingiae Eb661]
 gi|299063978|emb|CAX61098.1| Glycine cleavage system transcriptional activator [Erwinia
           billingiae Eb661]
          Length = 305

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 129/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFTSLNDATRKLQARSAK--GALTVSLLPSFAIQWLVPRLTSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++D +   D  D AI   R   P     L   KL   ++    +P  L   + PL 
Sbjct: 127 ISAVDRDEEKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGDK-PLK 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
             E D  N     D   +  + +       R +G   I+  Q    +    ++Q  + G 
Sbjct: 182 TPE-DLANQTLLHDASRRDWQSYT------RQLGVGHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQTELEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|260431080|ref|ZP_05785051.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414908|gb|EEX08167.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 301

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 141/306 (46%), Gaps = 14/306 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F + A   + + A  +L L+ +  S +++ LE E+G++L +R  R ++L+ +
Sbjct: 1   MDTEALRLFVMAADRLNISAAGRELGLAPAVASGRLARLEAELGVELLHRTTRKVSLSLE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++      E+  + +  +  L  S   P G LR A      Q  +   L +F   +PD+
Sbjct: 61  GAEFLPYAREILAQSDAARAVLGNSQSHPRGTLRFAAPSSFAQLHIMPLLADFHAGHPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L ++  D+     D A+R   P+  SSL  RKL        A+P YL     P +
Sbjct: 121 TLDLRLSDRQTDLIEGSFDLALR-SAPLADSSLKGRKLADDVRILCASPAYLAEHGTPEA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGSG 240
             +L +H  I + +  P+ +      +T  R   +P  +  +  ++   S  +  + G+G
Sbjct: 180 PDDLSRHRFIAWANADPRELVS----STGARFTLKPAATLCRAIIDDGTSQREATLAGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLK 293
           I++  ++ V        LVR++ E  +     ++  YP +   T K +AF +F+     K
Sbjct: 236 ISINSEWSVAHEIRRGRLVRVLPEWRLNDRAVLWLVYPRSNILTPKTRAFIDFLIERLGK 295

Query: 294 ARDWKF 299
            + W+ 
Sbjct: 296 RKAWRM 301


>gi|227820970|ref|YP_002824940.1| putative transcriptional regulator protein, LysR family
           [Sinorhizobium fredii NGR234]
 gi|227339969|gb|ACP24187.1| putative transcriptional regulator protein, LysR family
           [Sinorhizobium fredii NGR234]
          Length = 298

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 1/182 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V  +GS + A   L LS + IS+++  LE  +G +L  R  R ++LTE G   +
Sbjct: 7   LEVFARVVSTGSMSAAGRALGLSAAVISKRVKRLEERLGTRLLQRTTRQVSLTEAGQGFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   +E  +      S +  G LRI      G+  +  +L  F+  +PD+++ ++
Sbjct: 67  DRVLGVLAGIEEAEAYAAGRSSQAQGTLRITAPTSFGRMHIAPHLTGFMKDHPDLKLHIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  DI  D  D A+R+ + +  SSL+ RKL  +     A+P Y+     P  I +L 
Sbjct: 127 LSDEFSDIVADGFDLAVRIGE-LTDSSLVARKLAPVRRLLCASPDYISRHGAPKEIGDLA 185

Query: 188 KH 189
           +H
Sbjct: 186 EH 187


>gi|157368773|ref|YP_001476762.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320537|gb|ABV39634.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 302

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 100/196 (51%), Gaps = 6/196 (3%)

Query: 1   MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D  R+   F   A++ +F+ AA QL ++ ++IS+ I  LE ++ ++LF R+   +
Sbjct: 1   MSLPFDVHRLLPAFLAAAQAQNFSAAARQLGVTPAAISKNIRVLEEKLALRLFQRNTHNV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT++G  L +  + ++  L  T      +   PSG +R++     G+ +L   + +FL 
Sbjct: 61  VLTDEGKALLQQVAPLWQALSATLETAGSAQQAPSGTVRVSMIPGFGRQMLMPLIPQFLE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP I + L LD + +++  +  D  I  R  P   S L+ R L  + M   A+P YL  
Sbjct: 121 RYPQIDLDLSLDARVVNLVGEGFDVGIGSRVDP--DSRLVARSLYPMQMVLAASPGYLAQ 178

Query: 177 CREPLSIQELDKHNLI 192
              P   Q+L +HN +
Sbjct: 179 HGIPQDPQDLLQHNCL 194


>gi|306842383|ref|ZP_07475039.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306287490|gb|EFM58958.1| LysR family transcriptional regulator [Brucella sp. BO2]
          Length = 331

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 3/189 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT TE G  
Sbjct: 32  DNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRV 91

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI+++
Sbjct: 92  FYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEVR 151

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P S + 
Sbjct: 152 LRLSDHEVDIMSEGVDVAFKL-GVLENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPEA 210

Query: 186 L--DKHNLI 192
           L  D+H+ +
Sbjct: 211 LLSDRHHCL 219


>gi|172061650|ref|YP_001809302.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994167|gb|ACB65086.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 310

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 114/256 (44%), Gaps = 11/256 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKVATRLFERSTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     +GK+R+++T D G+N L   L EF  L+P +   L 
Sbjct: 67  NCCRQALQALDDAHALLQEGRNVVAGKVRLSSTSDFGRNQLLDWLDEFTTLHPGVTFSLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R+L        AAP ++     P      D
Sbjct: 127 ASDSASNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFVARHGMP-----AD 180

Query: 188 KHNLITFG-DLIPKCMEDFN-WLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIA 242
            H+L  F  ++I       N W  T    +     P  +  + N      ++ + G GIA
Sbjct: 181 PHDLARFPCNVITIASGPMNTWRFTRGDEVQTHTVPVSTAFETNDGGLTREWTLRGHGIA 240

Query: 243 LLPDYIVKDNPNLVRI 258
           L   + + D+    R+
Sbjct: 241 LKSLWDIADDVRAGRL 256


>gi|238798255|ref|ZP_04641740.1| LysR-family regulatory protein [Yersinia mollaretii ATCC 43969]
 gi|238717893|gb|EEQ09724.1| LysR-family regulatory protein [Yersinia mollaretii ATCC 43969]
          Length = 305

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 15/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T +G+  +
Sbjct: 7   MRIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITAEGTLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++    E          ++P GK+RI     L +N++   L +F   YP+I + L 
Sbjct: 67  QRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALSDFYQRYPNITLILG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  ID+  +  DC +R   P     L  R +        A+P YL     P+S+ +L 
Sbjct: 127 ANDSTIDLMREGVDCVLRAWLP-HDEQLAVRNIGQQPQITCASPAYLAKYGVPVSLDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +   +     D+    TV   +    + S L VN   + +   V G G+   P 
Sbjct: 186 GHQAVGYFSQL--TQRDYPLEFTVQGKVETRELPSILSVNGADAYIAAGVAGLGLIQAPT 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             ++       L+ ++     P+  ++  +P      G+  A R  + +   DW
Sbjct: 244 QGIQSQLAQGELIEVLPHCPPPAMPLFIMFP-----PGRFLAPRVRVLI---DW 289


>gi|170751867|ref|YP_001758127.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658389|gb|ACB27444.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 297

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 113/251 (45%), Gaps = 24/251 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   G F  A   LH  +S +SR+++ LE  +G +L  R +R   +TE G   +   
Sbjct: 12  FAEVVAHGGFAAAGRALHQPKSKLSRRVAALEARLGARLIERSSRRFRVTEVGQGFYERC 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  + E  +  + E+  +P G++R++    L  +++   ++ FL+ YP +++QL++ +
Sbjct: 72  RAMMLEAERAEALVAEAQTEPHGRIRMSCPSGLA-DIVAARVRGFLVRYPKVRLQLVVTD 130

Query: 131 KDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  +  D A+R+R+ + S +SL  R L +      AAP   +              
Sbjct: 131 RPVDLIEERIDVALRVRRDLTSDASLTMRTLGSSRWILVAAPQVARGL----------GP 180

Query: 190 NLITFGDLIPKCMED----FNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++   G +      D      W       TV     EPR++C     + ++      G G
Sbjct: 181 DIAALGAVPTLGTRDDPGEAEWRLEHRDGTVVTLRHEPRLTC---GDFAALTDAAADGLG 237

Query: 241 IALLPDYIVKD 251
           +A LPD+   D
Sbjct: 238 VAFLPDHACTD 248


>gi|107023627|ref|YP_621954.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690712|ref|YP_836335.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893816|gb|ABF76981.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648801|gb|ABK09442.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 325

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 7/254 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT++G    
Sbjct: 22  IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTDEGKLYL 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     SGK+R+++T D G++ L   L EF  L+P +   L 
Sbjct: 82  NCCRQALQALDDADAMLQEGRNVVSGKVRLSSTSDFGRHQLLDWLHEFTTLHPGVTFSLT 141

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R+L T      AAP +++    P    +L 
Sbjct: 142 ASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLATNRRVLCAAPSFVERHGLPADPHDLA 200

Query: 188 KH--NLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244
           +   N+IT   +    M  +++    +  I   P  +  + N      ++ + G GIAL 
Sbjct: 201 RFPCNVIT---IASGPMNTWHFTRGDEVQIHTVPVSTAFETNDGGLTREWTLRGHGIALK 257

Query: 245 PDYIVKDNPNLVRI 258
             + + D+    R+
Sbjct: 258 SLWDIADDVRAGRL 271


>gi|262042949|ref|ZP_06016093.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039666|gb|EEW40793.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 304

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 4/189 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  +   GSF+ AA  L +S+   +  I  LE  +G +L +R  R +  T +GS 
Sbjct: 5   DTLTLFVRIVERGSFSAAAADLGVSRPVATAAIKALEVSLGARLLHRTTRHVRPTAEGSL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   LE      + +    SG +R+    +L + LL   L +FL  YPDI +Q
Sbjct: 65  YYQRCVSILAALEEAN---RSAGGSISGTIRVDVAGNLARTLLLPALPQFLARYPDITLQ 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    +D+D+  +  DC IR    +  S +I R L  +     A+P YL     P +I+ 
Sbjct: 122 IGESERDVDLVREGVDCVIRGGH-LPDSEMICRPLAGLQEITCASPAYLARYGTPHTIEG 180

Query: 186 LDKHNLITF 194
           L  H +I F
Sbjct: 181 LTGHVMIGF 189


>gi|241204924|ref|YP_002976020.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858814|gb|ACS56481.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 295

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 137/296 (46%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+     A SGSF  AA++L +S + + R+I  LE E G+KL  R  R   LTE G
Sbjct: 3   DLLNLQTLIAAATSGSFAAAAKRLGISPAMVGRRIQALEQEYGVKLIERTTRTQRLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+     + +  +LE      +  +   SG+LR++    LG   L   + E    +P + 
Sbjct: 63  SRFLVKANRIIDELEELNDISRPDAEAMSGRLRLSAPTTLGIKRLAPVMAELAERHPALS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++++D+  +  D AIR+ + ++ SSLI R++ + H    A+  YL     P   
Sbjct: 123 VELNLSDRNVDLVAEGYDLAIRIGE-LKPSSLIARRVGSYHFVCRASSVYLDRFAVPERP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++     I   +L+P+    F         +G      +++++  ++    + G+GI  
Sbjct: 182 EDIRLGRCILNLNLVPRDEWPFETKGGEGFTVGVR--GNIEIDNGEALRMAALAGAGIIY 239

Query: 244 LP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +P D + +D  +  LV ++         ++  +P      G++ A  + I    RD
Sbjct: 240 VPVDLVAEDIADGRLVEVLAGWRKLVLPIHAIHPSRRFVPGRVGAIIDAIARGLRD 295


>gi|77459007|ref|YP_348513.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383010|gb|ABA74523.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 310

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 13/190 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +G F  AA++  LS SS+S  I  LE ++G++L  R  R +T T  G +L   
Sbjct: 11  IFAAVVEAGGFRAAAQKRGLSASSLSDCIRRLEGDLGLRLLNRTTRSVTPTAAGERLLER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 +++    +L + + +P G L++   + + + LL   L  FL LYP + +++++D
Sbjct: 71  LRPALQEIDAAFNDLDDDAQRPVGTLKLNVPVPVARFLLPDLLARFLRLYPGVNVEVVMD 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-------AYAAPHYLKNCREPLS 182
           N  +D++    D  +R  +       + R ++ + +        A AAP YL     P  
Sbjct: 131 NTFVDVNAGGYDAGVRYEES------LARDMIAVPIGPRRQRFVAAAAPCYLAERGTPTQ 184

Query: 183 IQELDKHNLI 192
            +EL  H+L+
Sbjct: 185 PEELPGHDLL 194


>gi|330984478|gb|EGH82581.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 307

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 4/197 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + +S +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDMSAAVASAALKRIERQLGARLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  L  S  +  G L+++   DLG+N+L   L EF   +P + +
Sbjct: 64  GFLEYARAALGSLEEGRRLLASSQDRCEGVLQLSAPSDLGRNVLLPWLDEFQQQHPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           +L+LD++  D+     D A+R  +P + SSL+   ++  +     AAP YL+   EP  +
Sbjct: 124 RLLLDDRIADLFRQPVDVALRYGEP-EDSSLVALPVLPDNRRVLCAAPSYLQRHGEPQQV 182

Query: 184 QELDKHNLITF--GDLI 198
           ++L +HN + F  GD +
Sbjct: 183 EQLAQHNCLLFMLGDRV 199


>gi|307729103|ref|YP_003906327.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583638|gb|ADN57036.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 302

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 146/300 (48%), Gaps = 13/300 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA +L +S++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDVNSLTLLVEILDAGNLSEAARRLKMSRANVSYHLNQLERSVGLQLVRRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + + L   +  +        G++R++     GQ ++ G L EF  LYP I
Sbjct: 61  GLQLYEHGRAIQNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMSGWLIEFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + ++ +N+  D+  D  D A+R + +P Q  +L+ R + ++   A A+  + ++   P+
Sbjct: 121 VLDVLFENRVEDLMRDEVDIAVRIMSEPPQ--NLVARDMGSVRYVACASRSFAESRGMPV 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSG 240
            + EL    LIT   ++ + +    +L      +  EP I      ++L + Q  + G G
Sbjct: 179 RLDELRTAPLIT-AAVVGRQLRVAAYLRDERHEVLLEPTIIS---ENFLFLRQAVLAGLG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + +LPDY+V D+    ++V  +++     F   +Y  Y     +T     F +FI  +AR
Sbjct: 235 VGILPDYVVHDDLKRGDVVTTLDEWRLSIFGTNMYMLYMPNRHHTRAAATFIDFILDQAR 294


>gi|170727306|ref|YP_001761332.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812653|gb|ACA87237.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 306

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 1/174 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  + R GS T AA+ L +S+SS+S+Q++ LE ++G +LF R  R + LTE G
Sbjct: 7   NMQGLVLFSHINRQGSLTAAAQLLGMSRSSVSKQLAALEKKIGSRLFNRTTRKIALTEVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++ +   +V   L+T +   ++S    +G L I+     G+  L   L  FL LYP + 
Sbjct: 67  RQVLKEAHKVELALQTIEHISEDSQSIVAGDLNISCASAQGRVHLVPLLTRFLSLYPKVN 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           + L L+++ ID+  +  D +IR+   +  SSLI RKL  +     A P YL   
Sbjct: 127 VNLQLEDRFIDMVAENIDVSIRVGY-LPDSSLIARKLGDLSGVLCATPEYLTGA 179


>gi|167743751|ref|ZP_02416525.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
          Length = 315

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 127/291 (43%), Gaps = 26/291 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRMPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVK----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            L R  +E    +E+T   L  ++        G +RI+ +  +G  +L   +      +P
Sbjct: 67  AL-RAHAEA---MESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L L N+  D+    AD A+R+ +P Q + LI R +  I +  +A   YL     P
Sbjct: 123 ALTVELALTNRVQDLLRREADIAVRMTRPGQ-TQLIARHIGGIELGLHAHRDYLARRGTP 181

Query: 181 LSIQELDKHNLI------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               EL +H LI       F   I K    F+  A             L+ +S L+ +  
Sbjct: 182 RDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----------ALRTDSDLAQLAL 230

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
              G+GI      + K +P LVR++         ++    E L+ + + +A
Sbjct: 231 IRCGAGIGACQAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRA 281


>gi|83720760|ref|YP_443230.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83654585|gb|ABC38648.1| transcriptional regulator, LysR family, putative [Burkholderia
           thailandensis E264]
          Length = 301

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 10/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKL 66
           L  F   AR G+FT AAE+L+++Q ++S+Q+  LE+ +G++LF R A+ L LT  G +  
Sbjct: 12  LVFFDAAARHGNFTRAAEELNVTQGAVSKQVVKLESYLGMQLFVRDAKALHLTRAGQTYA 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R+   +    E T + ++E S      + IA         L   + +F   YP++ I++
Sbjct: 72  GRIHDMLTGCAEATALVMKEPSPH---SITIACASGTAGMFLTPIIADFSHEYPNVAIRI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++     +++    D  +   + +    +   +++   + AY AP YL   R  +S  EL
Sbjct: 129 LVREGVFNLNPAEFDIGVYYIRDVPPPGMSGIRIIEEEVQAYCAPSYLG--RRRVSPHEL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               L+   +   + M   +W    D  I       +  NSY  ++Q  + G G+ L  +
Sbjct: 187 TNVTLLVAEEQQRQWMSWRDWFHLCDSEIAYKPSRTITANSYPVLLQLALRGHGVLLGWN 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            ++    +  +LV   +   +        +P+  ++T  +  FR ++ LK   WK
Sbjct: 247 QMITPLVERSDLVLASDASASFGGAYQLVWPDDRRDTAAVTHFREWL-LKRVPWK 300


>gi|300314051|ref|YP_003778143.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300076836|gb|ADJ66235.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 131/282 (46%), Gaps = 16/282 (5%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79
           F+ AAE++H++  +IS Q+  LE ++G++LF RH + +++TE G +      +   ++  
Sbjct: 25  FSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGKRISITETGQRFAATIRKSLSEIAL 84

Query: 80  TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139
               L+  + +   +L I+TT       L   L  F+  +P++++ L       D+ +D 
Sbjct: 85  AAEHLRSQNRQQ--RLVISTTPSFASRWLAPRLWRFIDAHPELEVVLQSAAHLNDLRLDG 142

Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIP 199
            D  +R  +    S L+  KL   + +  AAP Y     + L+      H  +   D   
Sbjct: 143 IDVGLRFGRG-NYSGLVSEKLSDDYYYPVAAPGYRGKRSKKLARPADLAHCSLLRVD--- 198

Query: 200 KCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNL 255
              E +  WLA     + EP    L  +S L++ Q    G G+AL    I         L
Sbjct: 199 -SRESWQPWLAEAGLELPEPTGGLLVEDSSLTLRQ-AAEGKGVALARHVIASQEISTGEL 256

Query: 256 VRIMEDVITPSFTV-YFCY-PEALKNTGKLKAFRNFIFLKAR 295
           VR+  DV+ PS    YF + PEAL+  G + AF+ +IF + R
Sbjct: 257 VRLF-DVVVPSEDAHYFVHLPEALEKPG-VAAFKEWIFEEMR 296


>gi|260599404|ref|YP_003211975.1| hypothetical protein CTU_36120 [Cronobacter turicensis z3032]
 gi|260218581|emb|CBA33836.1| hypothetical protein CTU_36120 [Cronobacter turicensis z3032]
          Length = 301

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 103/202 (50%), Gaps = 6/202 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A+S SF+ AA  L ++ ++IS+ +  LE  +G  LF R+   + LTE+G+ L 
Sbjct: 19  LPAFLAAAQSQSFSAAARLLGVTPAAISKSVRQLEARLGRVLFQRNTHFVVLTEEGAALR 78

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + ++H L  TQ  L++ + +P G +R++     G+  L   L  F   YP +++ L 
Sbjct: 79  DRVAPLWHAL--TQ-ALEKPTDEPQGLVRVSVIPGFGRYRLMPELPAFQQRYPQVRLDLA 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D + +++  +  D AI  R  +Q S ++ R++  + M   A+P YL     P   Q+L 
Sbjct: 136 MDPRRVNLIGERMDVAIGQRT-VQDSRIVTREIRPMRMMLAASPAYLARFGAPQQPQDLL 194

Query: 188 KHNLITFGDLIPKCMEDFNWLA 209
            H  +   +  P   +  +WLA
Sbjct: 195 HHRCLVHRN--PGNGKLQSWLA 214


>gi|229592588|ref|YP_002874707.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
 gi|229364454|emb|CAY52275.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
          Length = 315

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 123/275 (44%), Gaps = 15/275 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           S +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 10  SLNWDDLKFFLEVARTRKASVAAKRLAVDYTTVSRRISSLEVSLGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 70  PEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFVTPQLSHFVDTYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---C 177
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL      
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYKLQLYATQEYLDQHPPI 188

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R+P  + E   H  I++ D +    E   +LA V         S   +  Y++  Q    
Sbjct: 189 RKPTDLAE---HPFISYVDDLAFSSE-LLYLANVVPGASASLRSTSVIAQYVAAQQ---- 240

Query: 238 GSGIALLPDYIVKDNPNLVRIMED--VITPSFTVY 270
           G  +A+LP ++   +P L+ ++ +   IT  F +Y
Sbjct: 241 GRSMAILPCFLAAQDPRLLPVLGEQIAITRQFWMY 275


>gi|254523314|ref|ZP_05135369.1| transcriptional regulator LysR family [Stenotrophomonas sp. SKA14]
 gi|219720905|gb|EED39430.1| transcriptional regulator LysR family [Stenotrophomonas sp. SKA14]
          Length = 298

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 5/199 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR GSFT AA QL +SQS++S  + GLE  +G++L  R  R ++ TE G+ 
Sbjct: 7   NDLQAFVHVAREGSFTRAAAQLGVSQSALSHAMRGLEQRLGVRLLTRTTRSVSTTEAGAH 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    ++E     L E   +P+G +RI  T    + +    L   L  YP+++++
Sbjct: 67  LLETLAPRLAEIEDGLAALAEYRERPAGTIRINATGHAAEYIAWPRLAPLLQQYPELKME 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D    DI  +  D  IRL + +    +       + M    AP Y +    P    +
Sbjct: 127 LAADYGLADIVAERYDIGIRLGERLARDMVAVPISPPLRMRVVGAPAYFRQHVVPQHPHD 186

Query: 186 LDKHNLITF-----GDLIP 199
           L +HN +T      G L+P
Sbjct: 187 LAEHNCVTLRLPTHGGLMP 205


>gi|161525145|ref|YP_001580157.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160342574|gb|ABX15660.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 307

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 132/305 (43%), Gaps = 35/305 (11%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V     F  A+  L + +S++SR+I+ LE ++G++L +R  R  ++T+ G
Sbjct: 10  DLNDLYFFAQVVDHRGFAPASRALGIPKSTLSRRIAALEQQLGVRLVHRSTRQFSITDIG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     V  + E  Q  +++   +P G +R+   + L    +   L EF+   P + 
Sbjct: 70  QHYYNHCKAVLVEAEAAQDAIEQMRAEPRGVIRLVCPVALLHARIAPMLAEFMAKTPRVT 129

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKL-----------VTIHMHAYAAP 171
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L             +  H  A P
Sbjct: 130 VHLEATNRVVDVIGEGVDVALRVRPPPLKDSDLVMRVLGERAWSLVASPALVRQHDIAVP 189

Query: 172 HYLKNCREPLSIQELDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSY 228
             L  C              + FG   P+    +E  + + T  R +  PR      +  
Sbjct: 190 ADLAGC------------PTLDFGPPQPQHAWQLEGRDGVQTTIRHV--PRFVT---DDM 232

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +++ Q  V G G+  LP  +V D      LVR++ D +  S  ++  +P        ++A
Sbjct: 233 VALRQAAVAGVGVVQLPMMMVSDEIRRGELVRVLPDWLPRSGIIHAVFPSRRGLLPSVRA 292

Query: 286 FRNFI 290
             +F+
Sbjct: 293 LLDFL 297


>gi|209552098|ref|YP_002284014.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539691|gb|ACI59622.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 325

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 6/242 (2%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V R GS + A+ +  +S++++S +I  LE E+G+ LF R +  L LT  G   +    ++
Sbjct: 12  VVRCGSLSEASRKFLVSKATLSHRIRRLEAELGVSLFDRGSAELRLTSAGRTFYAYAEKI 71

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL-DNKD 132
               E     +     +    LRI TT +LG N        FL   P + ++L+L  + +
Sbjct: 72  AKACEEASDAMISQRSEDLIHLRIGTTDELGTNFFAPMALRFLKRAPTVSMELVLLRSTE 131

Query: 133 IDISMDYADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +       DC I    P   ++++ + +KL+T      AAP YL+NC  P S ++L  H 
Sbjct: 132 LFDRNSGLDCVIFAGDPPATEAANFVAKKLLTYSSQLCAAPSYLENCGNPASPEQLKAHA 191

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           L+   D        +     ++R    P    L  N +  +    V G GI   P + + 
Sbjct: 192 LV--ADTSQLRTRPWTLTNGLERSTIYPN-GRLSSNDFWMMKLSVVQGFGIGFFPSWFIA 248

Query: 251 DN 252
           D+
Sbjct: 249 DD 250


>gi|104782124|ref|YP_608622.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95111111|emb|CAK15831.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 292

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 127/294 (43%), Gaps = 12/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  +   GS + A  +  LS +++S +++ LE   G+ L  R  R L LT++G  
Sbjct: 3   DNLALFLAIIEKGSLSAAGRERGLSPATVSERLAALEAHYGVALLTRTTRSLNLTDEGRV 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +  +  ++  S   +G +R++  +DLGQN++   L  FL  +P + I 
Sbjct: 63  LADGARRLLAEADELEGRIRHGSENIAGLIRLSAPVDLGQNVIAPILDRFLADHPQVAID 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  ID+     D AIR    +  SSL  R L        AAP YL+    P    E
Sbjct: 123 LDLTDGYIDLVGQGIDFAIRY-GTLADSSLRARALGNNRRVVCAAPEYLQRHGIPAHPDE 181

Query: 186 LDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
           L  H+ I   FG        +  W   ++      R+S  +V N+   + ++ + G G+ 
Sbjct: 182 LAGHDCIVMRFG-----IHAERTWPFRLEGKAYPVRVSGRRVANNGEQVRRWALAGHGLC 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L     V+   D+  LV ++         +   YP       +++A    I  +
Sbjct: 237 LKSIRDVQADLDSGRLVEVLAAYGAGEIALQIVYPPTRVQPRRVRALAEVIVAQ 290


>gi|91790637|ref|YP_551589.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699862|gb|ABE46691.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 302

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 133/296 (44%), Gaps = 22/296 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+   +  + GSF  AA  L +++S IS+ I+ LE + G  LF R  R + LT  G+ 
Sbjct: 5   DALQALVLSKQLGSFAAAARALGVTRSQISKLIASLEADYGTALFVRSTRAIALTGAGAT 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           LH    ++       +  +       +G LR+   +  G+ +L   L +FL  +P ++++
Sbjct: 65  LHDYAVDLLAISAEAREAMAALRGTVAGPLRVNAPMSFGKLVLAPLLPQFLAQHPKVELR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+++ ID      D  +R+ + +  SSL  R++  +    YAAP YL+    P S + 
Sbjct: 125 VELNDRLIDPFEHGFDLTLRIAQ-LPDSSLAARRMCAVPRAIYAAPGYLQAHGVPDSPKA 183

Query: 186 LDKHNLITFGDL-------IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L  H  + +          + K  E  N        +G P  S    N+   +++  V G
Sbjct: 184 LKTHRCLNYAHANTGHVWHLGKGREKANVA------VGGPLCS----NNGDLLVEAAVAG 233

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFI 290
           +G+ L P ++   +    R++  +      P  ++Y  YP   +    ++A  +++
Sbjct: 234 AGLILQPGFLAARHIAAGRLVPVLPQWQEFPEISLYALYPATRRVPTTVRALVDYL 289


>gi|15964572|ref|NP_384925.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15073750|emb|CAC45391.1| Probable transcriptional regulator [Sinorhizobium meliloti 1021]
          Length = 326

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 127/290 (43%), Gaps = 16/290 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF    R  +FT AA +L ++Q+++S  I GLE ++G+ LF+R  R + LTE G K H  
Sbjct: 19  VFEAAGRHQNFTRAASELGMTQAAVSYAIRGLENQLGVPLFHRVHRAVQLTEAGEKFHAD 78

Query: 70  TSEVYHKLETTQIELQESSVKPSGK---LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            S     +   +I+     ++  G+   + +A +       +   L       P+I +++
Sbjct: 79  VS-----VGLARIQKSAEDIRAKGRETNVTLAASTAFASMWMLPRLARLREDLPEIDLRI 133

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +D+D+  +     IR   P          L    + A A P Y++    P +  +L
Sbjct: 134 QTSVRDLDLDDEPIPLGIRGGDPSHWPRYHAAVLADEVIQAVATPAYIETHGLPATPADL 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +HNLI   + + +  +   W A+     P    R   L +N Y+ ++Q  + G GIAL 
Sbjct: 194 IRHNLIHLEEPVRRACDWTEWFASAGLAYPTQGKR---LAINDYVLVIQAVLAGEGIALG 250

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +++      +  LV +   V+      Y  +P + +   + +  R+++ 
Sbjct: 251 WEHLTARQVRSGALVPVGGHVLRTGQAFYVVWPRSRELNSQARRIRDWLL 300


>gi|325928957|ref|ZP_08190118.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325540646|gb|EGD12227.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 308

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 131/296 (44%), Gaps = 16/296 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +   V   GSF+ A   L   +S +SR+++ LE  +G++L  R  R ++LTE G
Sbjct: 3   DLNDFALLVAVVDHGSFSAAGRALGFPRSKVSRRVADLEQRLGVRLLQRSTRAVSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ +     +    +      + ++  PSG++R++    +    L   L  FLL +PD+Q
Sbjct: 63  AEFYTHCKSITRSAQWALDVAERATQHPSGRIRVSCPTGVAHLFLAKLLPRFLLAHPDVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +++  +  D AIR+R  +  S LI R          A+P ++       S 
Sbjct: 123 VDLELTSRRVELIAEGIDVAIRVRSSLDDSGLILRSFGVSRQALVASPGFVHAHGPFASA 182

Query: 184 QELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSY---LSIMQYCVL- 237
             L  H ++  G   P+ +  E   W  T   P G   +   +   +   + ++ +  L 
Sbjct: 183 AAL--HEVLGMG---PRGVNGEPPRWRLT--SPQGTSELVDYRSRLFTEDVELLHHAALA 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+A LP  + + +     LV ++ D   P   ++  YP        ++A   F+
Sbjct: 236 GMGVAQLPLALCRGSIARGELVVLLGDHTLPVHQLHAVYPSRRGLAPGVRALIEFL 291


>gi|322833426|ref|YP_004213453.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321168627|gb|ADW74326.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 291

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 88/165 (53%), Gaps = 1/165 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VA +     A+    +S++++SR+I+ LE ++G++L  R ARGL LTE G+ L   T
Sbjct: 9   FILVATNEGLGKASRASGISKATLSRRIADLEEQLGVRLIERSARGLKLTEAGATLISRT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  ++      + +    P G+LR+A  +   Q  +     EF   YP+I+I+++ ++
Sbjct: 69  EGLLSEVTEAMTAVGDGVSTPRGRLRVAAPVLFSQLAMGRIGAEFCAAYPEIEIEIVAED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           + +D+  +  D AIR+  P   S+L+ R      +   AAP  ++
Sbjct: 129 RMVDLVEEQFDVAIRI-NPSPDSNLVGRCFAKDRLVVVAAPEIIR 172


>gi|163842639|ref|YP_001627043.1| LysR family transcriptional regulator [Brucella suis ATCC 23445]
 gi|254701168|ref|ZP_05162996.1| LysR family transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|254709510|ref|ZP_05171321.1| LysR family transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|256031004|ref|ZP_05444618.1| LysR family transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256159058|ref|ZP_05456887.1| LysR family transcriptional regulator [Brucella ceti M490/95/1]
 gi|256254407|ref|ZP_05459943.1| LysR family transcriptional regulator [Brucella ceti B1/94]
 gi|256368809|ref|YP_003106315.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260168136|ref|ZP_05754947.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99]
 gi|261221572|ref|ZP_05935853.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261757593|ref|ZP_06001302.1| transcriptional regulator [Brucella sp. F5/99]
 gi|265997536|ref|ZP_06110093.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|306844988|ref|ZP_07477569.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|163673362|gb|ABY37473.1| transcriptional regulator, LysR family [Brucella suis ATCC 23445]
 gi|255998967|gb|ACU47366.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260920156|gb|EEX86809.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261737577|gb|EEY25573.1| transcriptional regulator [Brucella sp. F5/99]
 gi|262552004|gb|EEZ07994.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|306274620|gb|EFM56409.1| LysR family transcriptional regulator [Brucella sp. BO1]
          Length = 304

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 4/194 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 60  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 120 DIEVRLRLSDHEVDIMSEGVDVAFKL-GVLENSNLRMRGIMNCERVVCAAPQYLERHGTP 178

Query: 181 LSIQEL--DKHNLI 192
            S + L  D+H+ +
Sbjct: 179 QSPEALLSDRHHCL 192


>gi|148258340|ref|YP_001242925.1| DNA-binding transcriptional activator GcvA [Bradyrhizobium sp.
           BTAi1]
 gi|146410513|gb|ABQ39019.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 306

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 122/290 (42%), Gaps = 12/290 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L+++Q++IS QI  LE E+GI+LF R  R L LT Q   
Sbjct: 8   NGLRAFEAAARHLSFTRAASELNVTQTAISHQIKRLEDELGIRLFVRQNRSLALTPQARD 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +  L      L     K +GK L ++T   L    L   L  F   +P I +
Sbjct: 68  YLPLVRAAFDDLRLATERLVR---KDNGKVLTVSTIASLAAKWLLPRLIAFQEAHPGIDV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++      +D   D  D AIR  +     +  +  L+   +    +P  L+  +     +
Sbjct: 125 RITTSTSLVDFRTDDVDAAIRYGRGHWPGARAE-WLMADELFPVCSPALLQGDKPLRCPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H L+          +D+  WL     P+   R S L  +     +Q  + G G+A+
Sbjct: 184 DLAHHTLLQASG---GYDDDWRLWLTAAGLPVEISRQSSLSFDLLFMTVQAAIDGLGVAI 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                V+D+     LV   +  +      Y   PE   +  KL AFR ++
Sbjct: 241 GRTAYVQDDIAKGRLVVPFKMALPSDAGFYLVTPEGRTDAPKLTAFRQWL 290


>gi|228958682|ref|ZP_04120398.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800998|gb|EEM47899.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 300

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 132/284 (46%), Gaps = 22/284 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    + FN+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP   +    N N+  I  +  TP+  +   Y
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQSIKIETPTPTIEIGLIY 274


>gi|148976120|ref|ZP_01812863.1| putative transcriptional regulator protein [Vibrionales bacterium
           SWAT-3]
 gi|145964515|gb|EDK29769.1| putative transcriptional regulator protein [Vibrionales bacterium
           SWAT-3]
          Length = 292

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 21/288 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  V   GSFT AA  L L ++++SR+I+ LE  + I+LF+R  R L++T+ G  
Sbjct: 4   EDLKLFTTVVELGSFTAAANALDLPRANVSRRINDLEKSLNIQLFFRTTRSLSVTKSGEL 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +    LE            P G+++I    + G +++Q  L +F  LYP+I++ 
Sbjct: 64  YYNELLKALSALEKANHVASNLLEVPHGRVKIGLLPETG-DIVQATLFKFQDLYPEIELD 122

Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  + N  ID+     D A+   + +  S+++ RK++ +      +P Y+     P +++
Sbjct: 123 IRSISNGFIDMYRQGLDLAMHGGR-LSDSNVVARKVMDLQRIFVVSPEYIAKTGRPATLE 181

Query: 185 ELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           EL K   + F    GD I K  E  N +  V+  I    I  ++V S            G
Sbjct: 182 ELAKFPFVCFRWPSGD-IDKEWEISNQVVKVEPSIVSDSIGFVKVAS--------ARHRG 232

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE--ALKNTGKL 283
           IALLP  +V+       LV +  +        +  YP+  AL +  +L
Sbjct: 233 IALLPQLMVRQELKEGTLVNLFPNETLQKEEAWLLYPQRKALSHASQL 280


>gi|28870365|ref|NP_792984.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853612|gb|AAO56679.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 304

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 136/289 (47%), Gaps = 17/289 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F +V  + SFT A ++L +S S + + +  LE  +G++LF+R  R + LT +GS     
Sbjct: 9   LFVLVTETRSFTLAGKRLGISSSGVGKSVGRLEESLGVRLFHRSTRSIALTLEGSIFLDR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +L+  Q+EL  +   P G+LRI+  +  G  L+   + +F+  YP+I++ +   
Sbjct: 69  CRRILSELDAAQLELSNARDLPKGRLRISVPLVFG--LVMPVVIQFMRTYPEIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R  +P   S L+ +++ +  +    +P Y      P    +L  H
Sbjct: 127 DRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCIVGSPDYFARHGLPEQPADLIHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +      P   +  +W   + R  G       Q    N+   +++    G GI  LPD
Sbjct: 186 ACLQHK--FPSTGKFEHW--PLRREPGSEDFELPQTMVCNTTEVLVEVARAGLGITCLPD 241

Query: 247 YIVKD---NPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++        L+ I+ D    T SF +++   + L  + +L+ F +F+
Sbjct: 242 FMLASAIRKGELIPILSDYTLHTGSFRLFWASSKHL--SVRLRVFIDFM 288


>gi|126175365|ref|YP_001051514.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125998570|gb|ABN62645.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 314

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 131/290 (45%), Gaps = 28/290 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT  G +
Sbjct: 5   EAAKVFVTIVERGSMVSAANALDMSRSMVTRYLSEMEEWSGARLLHRSTRSLSLTPAGEQ 64

Query: 66  L----HRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +    HR+      +L      +  ++V  P G LRI+ +  L   +L   ++++L  YP
Sbjct: 65  VLDYCHRLL-----ELANEVPAVSHAAVAIPRGLLRISCSQFLAHQILAPVVRQYLASYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              +   + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      
Sbjct: 120 QASVNFHVSSQTVDLVAERIDLAIRITNELD-PNLIARRLGECESVVCAAPSYLAARAAV 178

Query: 181 LSIQELDKHNLIT---FGDLI---------PKCMEDFNWLATVD--RPIGEPRISCLQVN 226
           L  ++L +HN +T   FGD++          K  +  N    ++  +    P       N
Sbjct: 179 LHPEDLTQHNCLTYSYFGDVMWRFYQADVAAKQAQALNSDPKLNQGQAFNVPVNGNFSAN 238

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
             + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y
Sbjct: 239 DSMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVY 288


>gi|323494938|ref|ZP_08100030.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323310902|gb|EGA64074.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 306

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 98/190 (51%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LT+ G+
Sbjct: 4   FSDMTLFVSIVKNHGLAAAGRELGLSPATVTARLQSLEDRYGVKLLNRSTRHISLTDSGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+   E+   ++ T+  LQ    +  G L+I+   D+G+  +   L EF  LYPD+  
Sbjct: 64  MYHQACLEIIDSVKETENLLQTGVKEVRGTLKISAPRDIGKQYISPILAEFSQLYPDVIP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L++   +++    D  IR  + +  S+LI RKL +      A+P YL N   P++ Q
Sbjct: 124 YLYLNDNLSNLAESGLDIVIRYGE-LADSNLISRKLASSRRVLCASPEYLANKGTPITPQ 182

Query: 185 ELDKHNLITF 194
           +L +H+ +  
Sbjct: 183 DLSQHDCLAM 192


>gi|253687323|ref|YP_003016513.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753901|gb|ACT11977.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 307

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 22/297 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSSLNDATRKLQSRSAK--GALTVSLLPSFAIHWLVPRLSSFNSDYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++D D   D  D AI   +      L   KL   ++    +P  L           
Sbjct: 127 IQAVDRDEDRLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPALLTGS-------- 177

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSG 240
              H L T  DL+   +       +WL+   +   +  +    + S+ + ++Q  + G G
Sbjct: 178 ---HPLKTPDDLVAHTLLHDASRRDWLSYTRQLGVQINVQQGPIFSHSAMVLQAAIHGQG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +AL  + + +   +   LV    DV+      Y    ++    GK+ AFR++I  +A
Sbjct: 235 VALANNVMAQTEIEAGRLVCPFNDVLVSRNAFYLVCHDSQAELGKIAAFRHWILARA 291


>gi|229588580|ref|YP_002870699.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360446|emb|CAY47303.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 303

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 115/245 (46%), Gaps = 2/245 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  +  SG+ T AAE+L++++S++ + ++ LE  +G  L  R  R   LTE G 
Sbjct: 6   FDGVELFLQIVESGNLTEAAERLNVTRSAVGKGLARLEARLGTCLLQRSTRRQRLTEDGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        +LE  +  L+    +P G+LR +  +  G +     L   +  + +++I
Sbjct: 66  AYYEHCLRALAELEAAESVLESGRQQPRGRLRASLPLAFGHHYAAPALWGLMDRFAELEI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ ID++ +  D A+R+     +  L  R+L    +   A+P YL+   +   I+
Sbjct: 126 EISFSDRLIDVAQEGFDLAVRIGALPDTDRLSARRLGEQAIGLAASPAYLQRVGQIERIE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I +    P+     N      RP      S L ++   ++    + G G+A L
Sbjct: 186 DLAGHRGIAYRCSAPRLEWALN--DEQGRPHRARVASPLMMDDLQAVADAAIAGVGLAWL 243

Query: 245 PDYIV 249
           P +++
Sbjct: 244 PSWLI 248


>gi|213969841|ref|ZP_03397975.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301384994|ref|ZP_07233412.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302133298|ref|ZP_07259288.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213925389|gb|EEB58950.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 304

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 136/289 (47%), Gaps = 17/289 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F +V  + SFT A ++L +S S + + +  LE  +G++LF+R  R + LT +GS     
Sbjct: 9   LFVLVTETRSFTLAGKRLGISSSGVGKSVGRLEESLGVRLFHRSTRSIALTLEGSIFLDR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +L+  Q+EL  +   P G+LRI+  +  G  L+   + +F+  YP+I++ +   
Sbjct: 69  CRRILSELDAAQLELSNARDLPKGRLRISVPLVFG--LVMPVVIQFMRTYPEIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R  +P   S L+ +++ +  +    +P Y      P    +L  H
Sbjct: 127 DRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCIVGSPDYFARHGLPEQPADLIHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +      P   +  +W   + R  G       Q    N+   +++    G GI  LPD
Sbjct: 186 ACLQHK--FPSTGKFEHW--PLRREPGSEDFELPQTMVCNTTEVLVEVARAGLGITCLPD 241

Query: 247 YIVKD---NPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++        L+ I+ D    T SF +++   + L  + +L+ F +F+
Sbjct: 242 FMLASAIRKGELIPILSDYTLHTGSFRLFWASSKHL--SVRLRVFIDFM 288


>gi|197335985|ref|YP_002156116.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197317475|gb|ACH66922.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 303

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 129/289 (44%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  SFT AA+ L +S++ +S+QI  LE  +G++L  R  R  +LTE G   
Sbjct: 7   QMIVFNALTQQQSFTKAAQLLDISRTQVSQQIQLLEERLGVQLVQRTTRSFSLTEAGQTF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +  ++   + EL  +     GKLR+        N +   L E    YP + I++
Sbjct: 67  AVHCANIADEINEAENELLTNIDNLQGKLRVGIAQSFATNHILPYLSELHHAYPQLNIEI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  ID+  +  D  I +         + R L+  H    A+P YL     P    +L
Sbjct: 127 TLFDHKIDVIAEQLDLWIGVMDS-PPEGFVARHLIDCHFVLVASPLYLAKQGIPYHPYDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            KHN +T+   I +  +D  W    +    + ++S   +++S  +I      G+GI  + 
Sbjct: 186 KKHNCLTY---ISRERKDDVWGFHKEDENLQIKVSGNYRIDSADAIRNATTAGNGIGYIA 242

Query: 246 DYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y++ D      LV+++ D  +  S  +Y  YP       K+  F  F+
Sbjct: 243 TYLLSDELQTGKLVQLLPDWELNQSMPLYAVYPRRKFLPKKVHVFMEFV 291


>gi|167578610|ref|ZP_02371484.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 290

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 126/298 (42%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 4   LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G L + T        L   L +     P + ++++
Sbjct: 64  AAVRQSLDALRVATADIR--SRRANGTLTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 121

Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
             ++DID   D+AD AI           S+ L Q ++  +   A+ A H          R
Sbjct: 122 T-SQDIDPQRDHADVAILFGAGDWPGCTSTRLFQERVTPVCSPAFRAAHADIAQPADLLR 180

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 181 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 229

Query: 238 GSGIAL----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    L D  V     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 230 NQGVALGWAPLVDTTVAAG-QLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 286


>gi|217975299|ref|YP_002360050.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217500434|gb|ACK48627.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 318

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 122/278 (43%), Gaps = 21/278 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA+ GSFT AA+ L ++ S++S+ I  LET +G KL +R  R ++LT  G   
Sbjct: 20  EIRHFVTVAQLGSFTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSY 79

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     L+  Q  L      PSG++R+   +  G+  +   L      YP +++ +
Sbjct: 80  LTDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLSLSQKYPKLELSI 139

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++  D+  D  D A+R+ +   +  L+ R+L        A+P Y      P    +L
Sbjct: 140 TFNDRATDLFSDGIDLAVRVGQLGDTVDLVARRLGEQRRVICASPAYFARLGTPQGKADL 199

Query: 187 DKHNLITFGDLIPKCMEDFNWL--------ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +H  I    L     +   WL           D P+      C       +I+   + G
Sbjct: 200 SQHQCIVGWPL----GQQHRWLLKNEDGIIEAYDIPVRHEIADC------EAILAATLAG 249

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            G+A +P ++V+D      L+ +++++ +    ++  +
Sbjct: 250 VGLAQVPIWLVEDYLKTGELISVLDELASDDTPIHLIW 287


>gi|126726979|ref|ZP_01742817.1| DNA-binding transcriptional dual regulator [Rhodobacterales
           bacterium HTCC2150]
 gi|126703651|gb|EBA02746.1| DNA-binding transcriptional dual regulator [Rhodobacterales
           bacterium HTCC2150]
          Length = 293

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 16/246 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VAR G+FT AAE+L++SQ+++S+++  LE  +GI L  R++R  TLT+QG K
Sbjct: 14  DYLMFFEAVARHGNFTRAAEELNVSQAAVSKRVKSLEERLGIDLIKRNSRAFTLTQQGRK 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   TSE    L+T   +++ ++ +   KL +A  + + Q  L   + E+L+    + I 
Sbjct: 74  LAGNTSEALSFLDTGIQDIRRTNHE---KLSLAANVTISQYWLTPRINEYLIGRNAVTIT 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++D ++ M   D  +   K I +          I +   AAP  +    +  ++  
Sbjct: 131 LTASDRDAELLMSDNDVIVYYGKDIPTGWDGAILFNEIWL-PVAAPELITKEVDITTLPL 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD-RPIGE-PRISCLQVNSYLSIMQYCVLGSGIAL 243
           LD      F    PK    FNW   ++ R   E    + +++ SY S +   + G GIAL
Sbjct: 190 LD------FEKATPKW---FNWNDLINLRQYAEFAHSNRVKLGSYGSSLDAALRGKGIAL 240

Query: 244 -LPDYI 248
             PD +
Sbjct: 241 GCPDVL 246


>gi|120598139|ref|YP_962713.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120558232|gb|ABM24159.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
          Length = 337

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G  
Sbjct: 30  EPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGHL 89

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++Q
Sbjct: 90  LYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMAKHPELELQ 149

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   ++
Sbjct: 150 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLVASPDYVAKHGEPTRPEQ 208

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  L
Sbjct: 209 LVDHNCLVYQG---EWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVYL 265

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV +++D  +T    +   YP       K+ AF  FI
Sbjct: 266 ASYLMEDEITKGTLVPLLKDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFI 315


>gi|311696475|gb|ADP99348.1| transcriptional regulator, LysR family protein [marine bacterium
           HP15]
          Length = 315

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 139/310 (44%), Gaps = 34/310 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VAR  SF+ AA++L +SQS++S QI  LET +G +LF+R  R L+LT++G +  
Sbjct: 9   LPVFEAVARLNSFSLAADELAVSQSAVSHQIKQLETYLGEQLFWRSGRTLSLTDEGRQYL 68

Query: 68  RVTSEVYHKLETTQIEL---QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              S    ++E    +L   +ES      +LR++         L   L     L+P + +
Sbjct: 69  DAVSSALLQIERASEQLLGHEES------RLRLSVFSSFAVRWLVPRLPYLQRLHPQLDL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE----- 179
            L + + +  +S   ADC I +R    + +    KL    +    +  Y K  R      
Sbjct: 123 ALEMSSGNPVLSDRVADCFITIR--TDAPAFSYDKLYEERLFPVCSQDYWKRMRRELGRD 180

Query: 180 ---------PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY-- 228
                    PLS +EL +  L++   +  +   D  W A  D  +GE     ++V  +  
Sbjct: 181 DQLEVRDEPPLSPEELARFPLLSTHSIFDRATGD--WQAWYD-AVGERLPGGVRVQHFSH 237

Query: 229 -LSIMQYCVLGSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            L  ++      G+AL  DY++   +D+ + VR+    +    T YF +  + +    ++
Sbjct: 238 MLLALEAARFHQGVALTNDYMLSTRRDSEDFVRLPSHSVATGDTFYFAWKTSRRQERGIQ 297

Query: 285 AFRNFIFLKA 294
             R ++  +A
Sbjct: 298 TLRRWLVDEA 307


>gi|296136600|ref|YP_003643842.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
 gi|295796722|gb|ADG31512.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
          Length = 302

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 11/260 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GSF+ AA QL  + S++SRQ+  LE  +GI+L  R  R L LT  G   
Sbjct: 12  EMVTFLRVAEFGSFSAAARQLGTTPSAVSRQVFRLEKHLGIQLILRTTRQLRLTAAGDAA 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E+    +      Q+ +  P G + I+      +++L   L +FL  +P +Q+QL
Sbjct: 72  RVRCGELVAAAQAVMQVPQQIAGTPKGSICISAPKAFARHVLHSLLLQFLAQWPQVQLQL 131

Query: 127 ILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           I  + ++D   +  D  IR+ R P +      R+L+ +     AAP YL          +
Sbjct: 132 IATDHEVDPFREGVDLMIRVTRHPPE--GFAARELMQVEQVLCAAPAYLAAHPAITHPSD 189

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ +  G D   +C   F    T    + + R +   VN     ++  + G G+  L
Sbjct: 190 LAAHSCLPLGEDAHDRCWR-FRQGDTETEVVVQGRYA---VNHSALRLEAMLAGLGLCTL 245

Query: 245 PDYIVK---DNPNLVRIMED 261
           PDY+ +   +N + V+++ D
Sbjct: 246 PDYVARHALENRSAVQVLPD 265


>gi|260769365|ref|ZP_05878298.1| LysR-family transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260614703|gb|EEX39889.1| LysR-family transcriptional regulator [Vibrio furnissii CIP 102972]
          Length = 300

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 125/270 (46%), Gaps = 11/270 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA + SFT  A++L +S+  ++R I  +E+ + ++L  R  R ++LT  G +   
Sbjct: 8   KVFIDVATTNSFTATADRLEMSRPMVTRYIDAMESWLNVRLLNRTTRKVSLTTAGEECLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +    + E  Q  L     +  GK+R+AT++  G + L   +  FL  +P ++I + +
Sbjct: 68  EVALWVDQAEGLQHRLLNRD-ELRGKVRVATSMSFGFSQLIPAVNSFLADHPQVEIDIDV 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++  D+  +  D AIR+       SLI R++        A+P YL+N  +  +  +L +
Sbjct: 127 QDRAADLVTERIDLAIRIAAN-PDPSLIGRRIGRCDSVLVASPDYLENASDIRTPADLAQ 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  + +     K  +   W  T         + C L  N   +++   VLG G+++ P Y
Sbjct: 186 HRCLGY-----KNFDRHVWNLTRGSEQAAVEVHCALTANEATTLLSAAVLGMGVSMQPTY 240

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           +V+       LV ++         +Y  YP
Sbjct: 241 LVQSALARGELVPVLAQWQPSVMDIYALYP 270


>gi|222084538|ref|YP_002543067.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221721986|gb|ACM25142.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 297

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 132/292 (45%), Gaps = 41/292 (14%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SF  A ++L ++ S++S  IS LE  +G++L  R  R +  TE+G  L      +   LE
Sbjct: 20  SFRAAGKELSIAPSAVSHAISSLEESLGVRLLARTTRSVLPTEEGQTL---LDRLAPALE 76

Query: 79  TTQIELQESSV---KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
              I L+++     +P+G LRI         L+   L +FL  YPDI +++  ++   DI
Sbjct: 77  QIDIALEDTLAMRGRPAGNLRITAPRFASDLLMAPRLGDFLNTYPDITLEIANEDGFSDI 136

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI--- 192
             +  D  IRL + ++   +  +    I      +P Y +N   PL  ++L  H  I   
Sbjct: 137 VKEGFDAGIRLEESVEGDMIAVKVSPDIRTVIAGSPAYFENNPRPLHPRDLVHHRCIKRR 196

Query: 193 -TFGDLIPKCMEDFNW---------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            T G +       + W         +  VD P+       + +   L+++   V G+G++
Sbjct: 197 FTDGSI-------YRWEFEKDGRELIVAVDGPL-------IVIEDRLAVLA-AVNGAGLS 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289
            L D  VK    + +L+R++ED     P F +Y  YP   +    L+AF +F
Sbjct: 242 YLFDIRVKQELADGSLIRVLEDWCPPYPGFCIY--YPSRRQMRPALRAFIDF 291


>gi|126732614|ref|ZP_01748411.1| Transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
 gi|126706898|gb|EBA05967.1| Transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
          Length = 298

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 129/262 (49%), Gaps = 17/262 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LRVF  VAR  S + A   L +  +++ R+++ LE  +G  LF +  +G  LTE 
Sbjct: 1   MDWDDLRVFLAVARGESLSAAGRVLRMDPATVGRRVARLEQGLGAPLFAKSPQGYALTEA 60

Query: 63  GSKL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           G++L  H  ++E    L T  ++ +   +  SG++RI         LL           P
Sbjct: 61  GARLVDHAESAEQAALLATEAVKGRSEGL--SGQVRIGAPDGCANYLLPQVCATIADQNP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++Q++   + +++S   AD AI +  P  +  L+ +K+    +H  A+  YL + R P
Sbjct: 119 ELEVQIVALPRVVNLSRREADMAIAVSPPT-AGRLVVQKIADYRLHLSASDAYLAS-RAP 176

Query: 181 L-SIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           + ++++L  H ++ +   IP  +  ++ ++LA +     E     L  NS     Q+   
Sbjct: 177 IETLEDLRGHRIVGY---IPDMIFDKELDYLADLGMNGVE-----LASNSVAVQFQWIKG 228

Query: 238 GSGIALLPDYIVKDNPNLVRIM 259
           G+G+ ++ D+ +     + R++
Sbjct: 229 GAGLGIVHDFALPQAEGVKRLL 250


>gi|254254503|ref|ZP_04947820.1| Transcriptional regulator LysR family [Burkholderia dolosa AUO158]
 gi|124899148|gb|EAY70991.1| Transcriptional regulator LysR family [Burkholderia dolosa AUO158]
          Length = 311

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 9/247 (3%)

Query: 1   MSFDW---DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MSFD      + V   V  +GSF+ A E L LS S +SR I+ LE  +G++L  R  R L
Sbjct: 1   MSFDGRLLSGMSVLAAVVEAGSFSRAGEVLGLSASGVSRSIARLEERLGVRLLDRTTRTL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT  G+ L+   +     +E     +  ++V   G LR+       + +L   L     
Sbjct: 61  HLTSDGASLYERAAPHLEGIEEAASYVSGAAVTVRGTLRVGLNPIFARYVLAPKLPLLRE 120

Query: 118 LYPDIQIQLILDNKDI-DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            +P + +  IL   DI D+  +  D A+R   P   S++  R L+   +   A+P YL  
Sbjct: 121 RHPGLDLT-ILQQPDIGDLVSEGIDVAVRF-GPQPPSTMTSRLLLRTRVLTVASPGYLAR 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYC 235
              P   ++L  H+ I + D  P+  + F+W     R +   + S     + + +M Q C
Sbjct: 179 HGRPRRPEKLVDHDCIQYID--PRRGKPFSWEFHRGREVLPVQTSGHLTTTDVDLMVQAC 236

Query: 236 VLGSGIA 242
           V G+GIA
Sbjct: 237 VNGAGIA 243


>gi|89055101|ref|YP_510552.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864650|gb|ABD55527.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 292

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 3/196 (1%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79
            + A   L +S +  S +IS LE  + ++LF R  R LT TE G   +    E+   +E 
Sbjct: 1   MSAAGRDLRISPAVTSSRISQLEEHLSVRLFQRTTRSLTPTEHGKAFYSGAKEILESVEN 60

Query: 80  TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139
            + ++ + +  P G L +A  + +G+ L+   +  FL LYP+++++L L ++ +D++ + 
Sbjct: 61  AEAQVIDITENPKGSLYVAAPLGVGRRLIAPEVPGFLDLYPEVRVRLRLTDRKVDLTTEG 120

Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIP 199
            D A  L +P + S+L  RK+  +     AAP Y+     P    EL            P
Sbjct: 121 LDLAFFLGEP-EDSTLRIRKIADVERVLCAAPDYVAARGMPAGGAELTSGAHECLNLRFP 179

Query: 200 KCMEDFNW-LATVDRP 214
              E F W L T D P
Sbjct: 180 GATE-FQWHLKTPDGP 194


>gi|218704990|ref|YP_002412509.1| putative LysR-family transcriptional regulator [Escherichia coli
           UMN026]
 gi|293404995|ref|ZP_06648987.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298380642|ref|ZP_06990241.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300895882|ref|ZP_07114459.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|301018666|ref|ZP_07182993.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|331663001|ref|ZP_08363911.1| LysR protein [Escherichia coli TA143]
 gi|218432087|emb|CAR12975.1| putative LysR-family transcriptional regulator [Escherichia coli
           UMN026]
 gi|291427203|gb|EFF00230.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298278084|gb|EFI19598.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300360184|gb|EFJ76054.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300399612|gb|EFJ83150.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|331058800|gb|EGI30777.1| LysR protein [Escherichia coli TA143]
          Length = 299

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 135/295 (45%), Gaps = 16/295 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGNISAAARKLEITPPSVSNALKLLEEYIGHPLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L   T+     LE +   +++   +PSG +RI  +      +L+  + EF   YP IQ+
Sbjct: 66  LLLEQTAAAVESLENSLESIRDQHQEPSGMVRITLSRFAYLLILKPAMAEFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  ++I  +  D  IR    ++   + +  +       YA+  YL     P    
Sbjct: 126 EISVYDGTVNIIKERFDLGIRFGDILEGGVVARPLMKPFREGLYASSAYLSRHGTPEVPA 185

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV--- 236
           +L  H LI +       ++P  + D     TV+ P G+       +++ + +M   +   
Sbjct: 186 DLCHHQLIGYRFITNNRILPLLLNDRGEQLTVEMP-GQ------LISNDIDVMADGIRNG 238

Query: 237 LGSGIALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LG G    P + ++ D    + +ME        VY  YP+    T ++KA  +F+
Sbjct: 239 LGIGRLFEPVWQLQPDRERFIPVMESYWKTYPPVYLYYPKNAGKTKRVKALIDFL 293


>gi|167579655|ref|ZP_02372529.1| glycine cleavage system transcriptional activator [Burkholderia
           thailandensis TXDOH]
          Length = 313

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 132/289 (45%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA +L ++  ++S Q+  LE E+G+ LF RH + L LT+ G +
Sbjct: 3   NALRVFEAAARHESFSRAANELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGGR 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S      +L ++T        +   +  F+  +P+I ++
Sbjct: 63  YAQQVRAALALLADATREIRASDR--DKRLAVSTLPSFAARWITPRIGPFIEQHPEIDLE 120

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 121 LRASDTLVDFARDDVDVAIRFGYGVYPGLYVE-PLLDETFFPVCAP-TLNGGVLPETPAD 178

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 179 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 233

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++AFR ++ 
Sbjct: 234 RSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLL 282


>gi|152969871|ref|YP_001334980.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954720|gb|ABR76750.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 304

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 4/189 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  +   GSF+ AA  L +S+   +  I  LE  +G +L +R  R +  T +GS 
Sbjct: 5   DTLTLFVRIVERGSFSAAAADLGVSRPVATAAIKALEVSLGARLLHRTTRHVRPTAEGSL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   LE      + +    SG +R+    +L + LL   L +FL  YPDI +Q
Sbjct: 65  YYQRCVSILAALEEAN---RSAGGSISGTIRVDVAGNLARTLLLPALPQFLARYPDITLQ 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    +D+D+  +  DC IR    +  S +I R L  +     A+P YL     P +I+ 
Sbjct: 122 IGESERDVDLVREGVDCVIRGGH-LPDSEMICRPLAGLQEITCASPTYLARYGTPHTIEG 180

Query: 186 LDKHNLITF 194
           L  H +I F
Sbjct: 181 LTGHVMIGF 189


>gi|167032791|ref|YP_001668022.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859279|gb|ABY97686.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 308

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 132/297 (44%), Gaps = 30/297 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-S 64
           + LRVF VVAR  +F  AAE+L ++Q+++++QI GLE  + ++LF R  RGL LT+ G  
Sbjct: 23  NALRVFEVVARHLNFRLAAEELGVTQAAVAQQIRGLEASLNLRLFERLPRGLALTDAGLG 82

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               + S +    E T++      ++P S  L ++ T       L   L  F   +PDI 
Sbjct: 83  YSGSIRSALAMIDEATRL------LRPQSAHLTVSVTPTFASKWLIPRLGSFAQSHPDID 136

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++  ++    + D  D A+R  KP   + L    L+   + A A+P   +  + P S 
Sbjct: 137 LRVLATDRLSHFNTDGVDIAVRYGKPEIGAGLNSELLMEDRIVAVASPALFEGSQVPASF 196

Query: 184 QEL-------DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           ++L       D HN                +LA V     +P    L+ N     +   +
Sbjct: 197 EQLQDFIMLHDAHNFWP------------QFLAAVFPQHVQPTAKNLRFNQTSLAIDAAI 244

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GIAL     V D+     L+++    +    + Y  +P  L+    L   ++++
Sbjct: 245 SGQGIALASLAFVSDDIVAGRLIQVFAQQLRLDKSFYLVWPRKLQQPESLGVVQHWL 301


>gi|115352796|ref|YP_774635.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282784|gb|ABI88301.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 310

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 114/256 (44%), Gaps = 11/256 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKVATRLFERSTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     +GK+R+++T D G+N L   L EF  L+P +   L 
Sbjct: 67  NCCRQALQALDDAHALLQEGRNVVAGKVRLSSTSDFGRNQLLDWLDEFTTLHPGVTFSLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R+L        AAP ++     P      D
Sbjct: 127 ASDSASNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFVARHGVP-----AD 180

Query: 188 KHNLITFG-DLIPKCMEDFN-WLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIA 242
            H+L  F  ++I       N W  T    +     P  +  + N      ++ + G GIA
Sbjct: 181 PHDLARFPCNVITIASGPMNTWRFTRGDEVQTHTVPVSTAFETNDGGLTREWTLRGHGIA 240

Query: 243 LLPDYIVKDNPNLVRI 258
           L   + + D+    R+
Sbjct: 241 LKSLWDIADDVRAGRL 256


>gi|330504367|ref|YP_004381236.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918653|gb|AEB59484.1| transcriptional regulator, LysR family [Pseudomonas mendocina
           NK-01]
          Length = 325

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 30/302 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     SGS    A  L +S ++ S+ I+ LE  +G++L  R  R L LT+ G+   
Sbjct: 16  LESFVKAVESGSIAAGARLLGISAAAASQNIARLEQSLGLRLLTRTTRSLALTDAGALYF 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +LE  +  + +   +P G+LRIA +   G+++L   +  F+  +P I+ +L+
Sbjct: 76  ERVQAVLQELELARAAVADLQDEPRGQLRIAASAAFGRHVLAPLIPGFMAQHPRIRCELL 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D   +  D +I + + +Q   L+ R++ T      AAP YL+    P   ++L 
Sbjct: 136 TTDAVVDHIQEGVDLSIHIAQQLQ-DGLVARRIATAQTRFCAAPAYLQRAGRPSEPEQLR 194

Query: 188 KHNLITF-----GDLI--PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            H+ + F     G  +      ED ++ A V       R+  +  N   ++ Q    G G
Sbjct: 195 DHDCLLFRFATDGRFLRWGFVREDVHFDAQV-------RVG-MSSNDIDALAQCAAAGGG 246

Query: 241 IALLPDYIVKDNPNLVR--IME--DVITPS--------FTVYFCYPEALKNTGKLKAFRN 288
           I  L  ++   +P L R  ++E     TP+           Y C  +  + T K++ F +
Sbjct: 247 ITRLASFVA--DPYLARGELVELFSSATPTHGRATSAPLDYYLCVRDRYELTPKVRLFMD 304

Query: 289 FI 290
           ++
Sbjct: 305 YL 306


>gi|325123412|gb|ADY82935.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 292

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 1/184 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F V      F+ AA+QL+L +S+IS++++ LE ++G+ L +R +R   L+E G   ++ 
Sbjct: 6   LFVVAVEHQGFSAAAKQLNLPKSTISKRVAILENKLGLTLIHRSSRSFVLSESGKLFYQH 65

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 +    +  L     +PSG +R++ ++ + Q LL   L E    YP + +Q+ + 
Sbjct: 66  AKNAVDEFRYAEENLLIQQQEPSGVVRLSASVPIAQYLLSDCLPELAERYPKLLLQVEVT 125

Query: 130 NKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D+  +  D  IR   +P+  S LIQR L    + A AAP YL       + ++L K
Sbjct: 126 DRYVDVMSENFDIVIRSHFQPLPDSGLIQRVLKNDKIIAVAAPTYLMKSAPIHTPEDLLK 185

Query: 189 HNLI 192
           H  I
Sbjct: 186 HEGI 189


>gi|218680566|ref|ZP_03528463.1| transcriptional regulator, LysR family protein [Rhizobium etli CIAT
           894]
          Length = 271

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 118/235 (50%), Gaps = 3/235 (1%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +L+LS + + R+I  LET+ G+KL  R  R   LTE G +     S V  +LE       
Sbjct: 2   RLNLSPAMVGRRIQALETDYGVKLIERTTRTQRLTEIGVRFLERASRVIDELEQLNDIAG 61

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
             + + SG LRI+    LG   L  ++  F   +P + ++L L ++++D+  +  D AIR
Sbjct: 62  PQNHEISGHLRISGPTTLGVKRLASSIARFANQHPAVSLELSLTDRNVDMISEGYDLAIR 121

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
           +   ++ SSLI RK+ T      A+P YL     P   ++L++H  I   +L+P+  + +
Sbjct: 122 VAH-LRPSSLIARKIGTYRFVCCASPGYLGKNGVPTHPEQLERHRCILSLNLVPR--DQW 178

Query: 206 NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIME 260
           ++     R +     S + +++  ++    V  +GI   P+ +V+++    R+ E
Sbjct: 179 HFEGQDGRVLAAKINSNIGIDNGEAMRVAAVEDAGIVYAPEVMVEEDIAAGRLTE 233


>gi|170741675|ref|YP_001770330.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168195949|gb|ACA17896.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 310

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 1/190 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L  F  VA +GSF  AA+ L    S +SR++S LE  +G++L  R  R + LTE G+ 
Sbjct: 14  DELAAFVTVAEAGSFAAAAKLLGRDASVLSRRVSQLEERLGVRLLSRTTRRVALTEVGAV 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R    +  +L +   E  +S+  P G LR++  +  G+  +   L  FL  +P I+I 
Sbjct: 74  YCRRVQGLLEELASASREASDSAAAPQGLLRVSLPVSFGRQWVAPLLPGFLARHPRIRID 133

Query: 126 LILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L ++ +D+  +  D AIR+   P + SSL  R++ +      AAP YL     P +  
Sbjct: 134 LRLTDRFVDVVAEGFDVAIRVAAGPQRDSSLTTRRIASYRNLLVAAPGYLAARGAPRTPA 193

Query: 185 ELDKHNLITF 194
           +L +H  + F
Sbjct: 194 DLLRHACLGF 203


>gi|161521576|ref|YP_001585003.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352258|ref|YP_001947885.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345626|gb|ABX18711.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336280|dbj|BAG45349.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 317

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 133/301 (44%), Gaps = 36/301 (11%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L VF  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+ G
Sbjct: 8   NLNRLAVFVAVVEAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    ET    +   +    G LR++  +D G  ++   +      +P + 
Sbjct: 68  RAFYEACRDIVQAAETALDAVSSDAGPLRGTLRVSVPVDYGAQVVAPAVVALRDAHPSLD 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREP 180
           ++LI +++ +D+  +  D A+R+ + +  S+    +L T      A+P ++      R+P
Sbjct: 128 VELIANDRVVDLVAESLDVAVRIGR-LADSNYRAVQLGTYEKWLVASPAFVARYGLPRDP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP---------IGEPRISC---LQVNSY 228
            ++  L                  F  L+T+ RP          G+  + C   +  N+ 
Sbjct: 187 AALATL-----------------PFVMLSTLARPHTLELESARGGKASVRCNASVVSNTA 229

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            +     + G G  LL D+ + D+     LVR++         ++  YP     + K++A
Sbjct: 230 TACRSIALAGGGFGLLTDFSIADDVAAGTLVRLLPAWRAAPAGIHAVYPSTRLPSPKVRA 289

Query: 286 F 286
           F
Sbjct: 290 F 290


>gi|167574294|ref|ZP_02367168.1| gp58 [Burkholderia oklahomensis C6786]
          Length = 299

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 6/237 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L  F   AR G+FT AAE+L ++Q ++S+Q+  LET +G+ LF R A+ L LT  G +  
Sbjct: 14  LVFFDAAARHGNFTRAAEELSVTQGAVSKQVVKLETFLGMTLFVRDAKALHLTRAGQQYA 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV + +    E T + ++E +      + IA         L   + EF   +P++ +++
Sbjct: 74  DRVHAILADCAEATALVMKEQTPH---SITIACASGTATLFLADRIAEFSADHPEVSVRI 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++     +++    D  +   + +    ++  +++   +HAY AP +L   R P   QEL
Sbjct: 131 LVREGVFNLNAAEFDIGVYYIRDVPPPGIVGTRIIEEDVHAYCAPAFLGGHRVP--PQEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
               L+   +   + M   +W       IG      +  NSY  ++Q  + G G+ L
Sbjct: 189 MGATLLVAEEQQRQWMGWRDWFRLTAGEIGFRPARTIAANSYPVLLQLALRGHGVIL 245


>gi|153009913|ref|YP_001371128.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561801|gb|ABS15299.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 291

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 22/292 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L ++Q+++S Q+  LET + + LF R  RGL LT +G  
Sbjct: 9   NSLRAFEASARHLSFTKAAIELCVTQAAVSHQVKSLETRLNVTLFERLPRGLMLTSEGET 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     + + ++  T    +    +    LR+     L    L   L++F   YP I ++
Sbjct: 69  LLPTLKDAFDRIAGTLERFEAGHYRE--ILRVGAVGTLAVGWLLPRLRDFQNRYPFIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           L  +N  +DI+ +  D AIR        I ++ L++  L  + +     P   +  R P 
Sbjct: 127 LSTNNNRVDIAAEGLDYAIRFGSGAWHGIDATRLLEAPLSPLCI-----PELARELRTP- 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H L+       +  E   W          P    +  +S L++M+  + G+GI
Sbjct: 181 --ADLARHTLLRSY----RADEWTQWFQAAGVTGDMPLPRSIMFDSSLAMMEAAMQGAGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL P  +      +  +V+  E  +T   + +    ++   T  + AFR+++
Sbjct: 235 ALAPPLMFSRQLLSETIVQPFETTVTMG-SYWLTRLQSRTETQAMAAFRDWL 285


>gi|194367162|ref|YP_002029772.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349966|gb|ACF53089.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 301

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 118/247 (47%), Gaps = 8/247 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F   ARSGSFT AA+ L +S+S++ + I+ LE  +G++LF+R  R + LT  G  
Sbjct: 8   NGLVTFVTTARSGSFTEAADALGISRSAVGKAIARLEARLGVRLFHRTTRRIALTTDGEA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   +    ++   +  L  + + PSG+LRI      G+ ++   L      YPD+Q+ 
Sbjct: 68  YYASCAAALEEISAAEACLGSAGL-PSGRLRIDMPSSFGRLVVLPVLLRLCRQYPDLQLT 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +  +D   +  D  IR      +  L+ R+L    +    +P YL+    P +++E
Sbjct: 127 MTFTDHFVDPVEEGIDLLIRFGGLHHAEHLVARRLGRQRLVTCTSPAYLQAHGVPRTVEE 186

Query: 186 LDKH-NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L +H +++ F     +  +   W    +   G    S   Q+N   ++++  + G GI  
Sbjct: 187 LAQHRSIVGF-----RHGQPVWWRIGSEEDEGTFIPSAPYQLNDGDAVIEAAIAGLGICQ 241

Query: 244 LPDYIVK 250
           +P  +V+
Sbjct: 242 MPVSLVR 248


>gi|116255778|ref|YP_771611.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260426|emb|CAK03530.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 294

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 116/258 (44%), Gaps = 29/258 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG---- 63
           + +F  V  +GSF  AAE   +S + +++ I  +ET +G KL +R  R   LTE G    
Sbjct: 7   MAMFVRVIDNGSFAAAAEIAQVSPAMVAKHIKTIETRLGAKLIHRTTRRHQLTEVGQLYY 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R  SEV    E +  ELQ +   P G+LR+   +  G  +L   L ++   YPD+ 
Sbjct: 67  ERCKRALSEVALA-EASASELQSA---PRGRLRLVAPVSFGTQVLVPTLIDYQNAYPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L LDN   D+  +  +  I +  P+  SSL+ R L        A+P YL     P S 
Sbjct: 123 IELSLDNNVHDLVGEGFELGIHI-GPLSDSSLVARPLTPYRRILAASPDYLARHGRPASP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPR---ISC-LQVNSYLSIMQY 234
           + L  H           C+    W    DR     P GE R   IS     N   ++   
Sbjct: 182 EALANH----------LCLGHSYWRMR-DRWHLVGPGGEMRDVLISGKFSTNQGAALRVA 230

Query: 235 CVLGSGIALLPDYIVKDN 252
            + G+GIAL P+ ++  +
Sbjct: 231 ALSGAGIALQPELLLAAD 248


>gi|91780309|ref|YP_555516.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692969|gb|ABE36166.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 318

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 132/291 (45%), Gaps = 9/291 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R++  LE  +G  LF +  A G  LT
Sbjct: 11  NLNWDDLRYFLEVARTQRASGAAKRLGVDHTTVARRVRELEAALGTVLFDKSRADGFVLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      V   + +   +   ++   SG +RI +T   G   L   L  F   +P
Sbjct: 71  AEGQRLVAYADAVETSVHSASEQFAGAAQSLSGHVRIGSTEGFGCFFLSPQLTRFTARHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I L+     + +S   AD AI L +P +    +  KL    +  Y    YL+     
Sbjct: 131 GISIDLLPVPHFVSLSKREADMAITLERP-ERGQYVFTKLCDYRLRLYGTREYLEAHAPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239
            ++ +L  H  I +   +    E    L  ++R I  P ++    ++ +    Y  L G+
Sbjct: 190 GAVADLRNHAFIDYVADLAFSHE----LLYLNRTI--PNVTARLCSTSVIAQYYAALQGN 243

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +A+LP ++   +P LV I+ + I  +   +    E L+   ++ +  +++
Sbjct: 244 ALAILPCFMGAPDPRLVPILPEEIVVTRHFWLSSREDLRKLRRVASLWDYL 294


>gi|77918693|ref|YP_356508.1| LysR family transcriptional regulator [Pelobacter carbinolicus DSM
           2380]
 gi|77544776|gb|ABA88338.1| transcriptional regulator, LysR family [Pelobacter carbinolicus DSM
           2380]
          Length = 300

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 124/267 (46%), Gaps = 18/267 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +W+ +R F  ++R+ SF  AA QL ++ S++SR+IS LET +  KLF R  +G  LT
Sbjct: 1   MDQNWNDIRFFLALSRTTSFVSAATQLKVTHSTVSRRISALETALQTKLFVRTEKGCRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L  +  E+       Q  + +   + SG +RIAT   LG   L   +       P
Sbjct: 61  SAGEQLLPLAEELEKAALKFQEHVPDRDNQLSGTIRIATPDGLGHCFLASRINALQSKNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+LI       +S    D  I ++KP     +I R++       +A+  YL+     
Sbjct: 121 LLEIELIAVPMYYSLSKREVDILITVKKPT-VDRIIARRITNYRFGLFASREYLEGFPPI 179

Query: 181 LSIQELDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQY 234
               +L +H  + + D +      + +E+++           P + +  + ++ ++ M  
Sbjct: 180 QKFGDLAEHRFVGYIDDLLYDQKLRFLEEYS-----------PALKTSFRSSTIIAQMNA 228

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMED 261
              G+GI ++P ++     +LV ++ +
Sbjct: 229 LKAGAGIGVIPYFMAHTERDLVPVLPE 255


>gi|62289344|ref|YP_221137.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|189023597|ref|YP_001934365.1| LysR family transcriptional regulator [Brucella abortus S19]
 gi|254688659|ref|ZP_05151913.1| Transcriptional regulator, LysR family protein [Brucella abortus
           bv. 6 str. 870]
 gi|254696784|ref|ZP_05158612.1| Transcriptional regulator, LysR family protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254707908|ref|ZP_05169736.1| Transcriptional regulator, LysR family protein [Brucella
           pinnipedialis M163/99/10]
 gi|254729693|ref|ZP_05188271.1| Transcriptional regulator, LysR family protein [Brucella abortus
           bv. 4 str. 292]
 gi|256256906|ref|ZP_05462442.1| Transcriptional regulator, LysR family protein [Brucella abortus
           bv. 9 str. C68]
 gi|260761180|ref|ZP_05873523.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|261315399|ref|ZP_05954596.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|62195476|gb|AAX73776.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|189019169|gb|ACD71891.1| Transcriptional regulator, LysR family [Brucella abortus S19]
 gi|260671612|gb|EEX58433.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|261304425|gb|EEY07922.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
          Length = 304

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 4/194 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 60  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 120 DIEVRLRLSDHEVDIMSEGVDVAFKL-GVLENSNLRMRGIMNCERVVCAAPQYLERHGTP 178

Query: 181 LSIQEL--DKHNLI 192
            S + L  D+H+ +
Sbjct: 179 QSPEALLSDRHHCL 192


>gi|11610565|dbj|BAB18931.1| hypothetical protein [Pseudomonas sp. Y-2]
 gi|37790594|gb|AAR03449.1| putative Lys-R type regulator [Pseudomonas sp. K82]
 gi|54290083|dbj|BAD61052.1| LysR-type regulatory gene [Delftia acidovorans]
 gi|112774543|gb|ABI20712.1| LysR-type regulator [Delftia sp. AN3]
          Length = 300

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 123/261 (47%), Gaps = 21/261 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +R F  + R GS+  AA+   +  S++ R+I  LE   G  LF R   G    +  +
Sbjct: 11  WDLIRAFLALERHGSYEVAADMEGIDDSTLRRRIRVLEQRFGRTLFVRSEAGW---KASA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH + S   H +E       ++  + +G +RI + +D+               +P + +
Sbjct: 68  DLHALVSAAQH-MEEAARSFSQNHQEGAGVVRI-SLMDVFAKRFAPVFVALGEKFPRLLL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +  +   +++  D  D A+RL +P++ S+SL  RK+  + + AYA+  YL   R   S 
Sbjct: 126 NITTETHFVNLEQDQVDIAVRLARPVRNSNSLRVRKIGAVAVGAYASRAYL--ARHDTSA 183

Query: 184 QE---LDKHNLITFGDLIPKCMEDFNWL-ATVDRP----IGEPRISCLQVNSYLSIMQYC 235
                +D H+L+     +    +D N+  A +D       G+ R+   Q +S++ +   C
Sbjct: 184 SNPAFVDDHDLLAMN--LQFFHQDHNFTYANLDWAKFGLTGKVRV---QSDSFVPMAHLC 238

Query: 236 VLGSGIALLPDYIVKDNPNLV 256
            LG G+ALLP ++  D P LV
Sbjct: 239 ALGHGVALLPKFVAADYPELV 259


>gi|218676212|ref|YP_002395031.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
 gi|218324480|emb|CAV25928.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 326

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 17/262 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G  ++
Sbjct: 29  LASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEKALSVKLFERTTRTLIITQAGQLVY 88

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              S V        +EL  S   +P+G + +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 89  D-QSVVMINAAQQAVELSTSDHTEPAGSITVAAPEAFLNSVLQPFVVPFLNQYPEIQLKL 147

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DIDI     D A RL  KP    SL+ ++L   ++   A+P YL     P    E
Sbjct: 148 RAADGDIDILRQGIDIAFRLTDKP--DESLVLKELGKTNLVLCASPDYLDAKGTPHHPTE 205

Query: 186 LDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H+ +   +     + DF   +   TV      P      VN     ++    G G+ 
Sbjct: 206 LSEHDCLYLAETDKDHIWDFLKDDEFYTV------PVSGRYAVNHSQMRLKGVKEGLGVG 259

Query: 243 LLPDYIVKD---NPNLVRIMED 261
           +  D++++D     ++V+++ED
Sbjct: 260 IFHDFVIQDALAEGSVVQVLED 281


>gi|91227770|ref|ZP_01261997.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|269967933|ref|ZP_06181973.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|91188417|gb|EAS74712.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|269827456|gb|EEZ81750.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 314

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  SFT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVIFSALLKHKSFTAAAKSLGVSVSHVSKQLSQLEASLGIKLVQRTTRSFTPTEAGKTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +V   + +  +E++    + +G +R+  +   G   +   ++E   LYP +Q+++
Sbjct: 68  FHHCEQVVQAVSSATLEMETQRDEVAGLVRLGLSQSFGTLHIIPAIQELRELYPQLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  +   + +    + QR L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMLAEGLDLWVTNNEHLPEGYIAQR-LTDCQFVVAASPDYLLKHDTPAEPDDL 186

Query: 187 DKHNLITFGDLIPKCME-DF-NWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
             HN      LI +  E D+  W  T D+     ++S    V+   ++    + G GIA 
Sbjct: 187 SAHNC-----LIYRSWERDYTGWAFTKDQQELNVKVSGNYSVDLAEAVRDAAIAGWGIAY 241

Query: 244 LPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y++ D      L++++ D   + S   Y  YP       K+ A  NFI
Sbjct: 242 LATYLLGDEFRTGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVINFI 292


>gi|271501040|ref|YP_003334065.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344595|gb|ACZ77360.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 303

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 15/285 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG--LTL 59
           S  W+  R F  V R GS + A+  L ++Q +  R ++GLE+ +G  LF R   G   T 
Sbjct: 4   SIPWEWYRTFLAVLREGSLSGASRTLEITQPTAGRHVAGLESALGQVLFTRSQTGLLATD 63

Query: 60  TEQGSKLHRVTSE-VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
                K H  T E   + L  T   L   S    G +R++ +  +G  +L   +      
Sbjct: 64  AALALKAHAETMESTANALLRTAANLSMDSAAIRGVVRVSASEVIGAEVLPPLITRIRQA 123

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP I I+L+L N+  D+    AD A+R+  P+Q   L+ R L  I +  +A+  YL    
Sbjct: 124 YPKIAIELVLSNRFQDVLHREADIAVRMVPPLQ-EQLVARCLGRIELGLHASEAYLARQG 182

Query: 179 EPLSIQELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            P SI +L  H LI F     LI K ++ +        P  +  +  ++ +S L+ +   
Sbjct: 183 APESIDDLLTHALIGFDQSTPLIRKALKQY--------PQFQRDVFSMRTDSDLAQLNLI 234

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
              +GI +    +      L R++ D  +     +    E L+++
Sbjct: 235 RASAGIGICQVQLADGGIPLQRVLPDFFSLHLDTWVVMHEDLRHS 279


>gi|212636430|ref|YP_002312955.1| regulatory protein LysR:LysR substrate-binding [Shewanella
           piezotolerans WP3]
 gi|212557914|gb|ACJ30368.1| Regulatory protein, LysR:LysR, substrate-binding [Shewanella
           piezotolerans WP3]
          Length = 313

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    +     +   +    G L++  +   G   +   L EF+  +P++++Q
Sbjct: 66  LYAQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMAKHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y++    P   ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLAASPSYVEQHGMPSRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    V G G+  L
Sbjct: 185 LVDHNCLVYQG---EWHEHSVWQFKQGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVYL 241

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV I+++  +T    +   YP       K+ AF +FI
Sbjct: 242 ASYLLEDEIAKGTLVPILDEWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|209516286|ref|ZP_03265143.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503222|gb|EEA03221.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 318

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 97/182 (53%), Gaps = 1/182 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +  + SFT AAE L++ +++ +  +  LE  +G  L  R  R L++T +G+  +
Sbjct: 8   MRTFIRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTALLVRTTRRLSITPEGAAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++   L+  +  ++ S+   +G+LRI     +   ++  +L +F   YP++ + + 
Sbjct: 68  ERCAQILADLDEMEASIRNSTDNLTGRLRIEMPSAVASAIVLPSLDDFHTRYPNLDLAIG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+ +D+  +  DC+I+L + +  S+L+ R+L ++     A+P YL     P  + EL 
Sbjct: 128 VSNRTVDMVSEAIDCSIQLGE-LPDSNLVARQLGSLDQITCASPAYLDRYGSPADLDELR 186

Query: 188 KH 189
            H
Sbjct: 187 AH 188


>gi|292900417|ref|YP_003539786.1| regulatory protein for glycine cleavage pathway [Erwinia amylovora
           ATCC 49946]
 gi|291200265|emb|CBJ47393.1| regulatory protein for glycine cleavage pathway (LysR-family
           transcriptional regulator) [Erwinia amylovora ATCC
           49946]
          Length = 305

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 128/299 (42%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFTALNDATRKLQARSAK--GALTVSLLPSFAIQWLVPRLTSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++D +   D  D AI   R   P     L   KL   ++    +P  L       S
Sbjct: 127 IQAVDRDEEKLADDVDVAIFYGRGNWP----GLRAEKLYAEYLLPVCSPQLLTGAHPLTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLG 238
              L  H L     L      D+    +  R +G   I+ +Q     S    ++Q  + G
Sbjct: 183 PTALAHHTL-----LHDASRRDWQ---SYTRQLGLNTIN-VQHGPIFSHSAMLLQAAIHG 233

Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 234 QGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|160900498|ref|YP_001566080.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366082|gb|ABX37695.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 314

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 116/246 (47%), Gaps = 10/246 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F      GS   AA QL +S ++ S+ I+ LE E+G +L  R  R + LTE G +  
Sbjct: 7   IETFVKALEGGSIASAARQLGISPAAASQNIARLERELGTRLITRTTRSMALTEAGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +LE  Q +L +   +  G+LRIA     G+++L   L  F   +P ++++L+
Sbjct: 67  ARVGPVLQELEKAQSDLSQLHGELQGRLRIACMAAFGRHVLAPLLPVFAAQHPRLELELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D ++R R  ++    + R+L  +     A+P YL+    P + Q+L 
Sbjct: 127 VVDRQVDVLKEDVDISVRYRDVLEPGMAV-RQLAAVPRVLCASPAYLQAHGRPRTAQDLL 185

Query: 188 KHNLITFGDLIPKCMED---FNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIAL 243
            H  + +     +   D     W  + D    +P++    + S + ++ +  V G GI  
Sbjct: 186 DHACLLY-----RREADGRFMRWPFSRDGKRVDPQLRVTAIASDVDALTEMAVAGGGIVW 240

Query: 244 LPDYIV 249
           +  +I 
Sbjct: 241 IGSFIA 246


>gi|37525286|ref|NP_928630.1| hypothetical protein plu1320 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784713|emb|CAE13613.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 297

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 136/285 (47%), Gaps = 9/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA + SF  AA QL LS SS+S+ IS LE ++G++L  R  R ++LT +G+     
Sbjct: 9   IFIHVAEARSFATAARQLGLSPSSVSKSISRLEDKLGVRLLQRSTRSVSLTAEGTLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++ T + EL  S   P G+LR+  ++ L  NL+   L  F+  YP I+++L   
Sbjct: 69  CKRILDEISTAEHELLSSISAPQGRLRV--SLPLLSNLMLPVLSAFVTCYPQIELELDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  + +  S L+ +++ +       AP Y     +P   +EL  H
Sbjct: 127 DRLVDVIDEGFDAVVRTGE-LNDSRLMNKRIGSSRFIYVGAPSYFAQHGKPSHPRELLHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
             +         +E   W   + R   +  +   +  N   +++   + G GIA LPD+ 
Sbjct: 186 ACLMHRFPTTGLLE--KWPLCLGRSEIDIHLQAKITSNHVETLLHMAIQGHGIACLPDFT 243

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           VK    +  L+ I++     S T    +P       K++AF +F+
Sbjct: 244 VKQALASGTLLTILDKWAGTSSTFRVLWPSNRWVLPKVRAFVDFM 288


>gi|148548768|ref|YP_001268870.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148512826|gb|ABQ79686.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 297

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 129/283 (45%), Gaps = 16/283 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF VVAR  +F  AA++L ++Q+++++QI GLE  + ++LF R  RGL LT+ G  
Sbjct: 12  NALRVFEVVARHLNFRLAADELGVTQAAVAQQIRGLEASLNLRLFERLPRGLALTDAGLG 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               +  + + L    I+     ++P +  L ++ T       L   L  F   +PDI +
Sbjct: 72  ---YSGSIRNAL--AMIDEATRLLRPQASHLTVSVTPTFASKWLIPRLGRFAHSHPDIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++  ++    + D  D A+R  KP   + L    L+  H+ A A+P   +  + P S +
Sbjct: 127 RVLATDRLSHFNTDGVDLAVRYGKPDIGAGLNSELLMEQHIVAVASPRLFEASKVPTSFE 186

Query: 185 ELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L    L+    D  P+      +LA +    G+     L+ N     +   + G GIAL
Sbjct: 187 QLQAFTLLHDAHDFWPR------FLAQLFPQHGQATAKNLRFNQTSLAIDAAISGQGIAL 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
                V D+     L ++    +    + Y  +P  L+    L
Sbjct: 241 ASLAFVSDDLVAGRLTQVFAQQLRLDKSFYLVWPRKLQQPESL 283


>gi|254247274|ref|ZP_04940595.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124872050|gb|EAY63766.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 310

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 7/254 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTDEGKLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     SGK+R+++T D G++ L   L EF  L+P +   L 
Sbjct: 67  NCCRQALQALDDADAMLQEGRNVVSGKVRLSSTSDFGRHQLLDWLHEFTTLHPGVTFSLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R+L T      AAP +++    P    +L 
Sbjct: 127 ASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLATNRRVLCAAPSFVERHGLPADPHDLA 185

Query: 188 KH--NLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244
           +   N+IT   +    M  +++    +  I   P  +  + N      ++ + G GIAL 
Sbjct: 186 RFPCNVIT---IASGPMNTWHFTRGDEVQIHTVPVSTAFETNDGGLTREWTLRGHGIALK 242

Query: 245 PDYIVKDNPNLVRI 258
             + + D+    R+
Sbjct: 243 SLWDIADDVRAGRL 256


>gi|315181895|gb|ADT88808.1| hypothetical LysR-family transcriptional regulatory protein [Vibrio
           furnissii NCTC 11218]
          Length = 300

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 125/270 (46%), Gaps = 11/270 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA + SFT  A++L +S+  ++R I  +E+ + ++L  R  R ++LT  G +   
Sbjct: 8   KVFIDVATTNSFTATADRLEMSRPMVTRYIDAMESWLNVRLLNRTTRKVSLTTAGEECLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +    + E  Q  L     +  GK+R+AT++  G + L   +  FL  +P ++I + +
Sbjct: 68  EVALWVDQAEGLQHRLLNRD-ELRGKVRVATSMSFGFSQLIPAVNSFLAEHPQVEIDIDV 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++  D+  +  D AIR+       SLI R++        A+P YL+N  +  +  +L +
Sbjct: 127 QDRAADLVTERIDLAIRIAAN-PDPSLIGRRIGRCDSVLVASPDYLENASDIRTPADLAQ 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  + +     K  +   W  T         + C L  N   +++   VLG G+++ P Y
Sbjct: 186 HRCLGY-----KNFDRHVWNLTRGSEQAAVEVHCALTANEATTLLSAAVLGMGVSMQPTY 240

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           +V+       LV ++         +Y  YP
Sbjct: 241 LVQSALARGELVPVLAQWQPNVMDIYALYP 270


>gi|319761168|ref|YP_004125105.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|317115729|gb|ADU98217.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
          Length = 270

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 129/282 (45%), Gaps = 32/282 (11%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           + +S++++S+ +  LE  + ++L +R  R ++LTE+G +L       +  L+     ++ 
Sbjct: 1   MGVSRAALSQHLKALEQRLDVRLLHRTTRDMSLTEEGQRL-------FDALQGALASVER 53

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
           +  +PSG +RI T+    Q LL+ +L EFL  YP ++++L+L +   +I  D  D  IRL
Sbjct: 54  ALAEPSGLIRINTSRVAAQALLEPHLAEFLARYPRLRVELVLADGFSNIVADGMDAGIRL 113

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
            + +    +       + M    +P Y +    P    +L +HN + +          F 
Sbjct: 114 GESLDEHMVAVPITPMVRMAVVGSPGYFERHGTPAEPADLMRHNCLAY---------RFT 164

Query: 207 WLATVDR-----PIGEPRISCLQ------VNSYLSIMQYCVLGSGIALLPDYIVKD---N 252
               +DR     P  E R   L+       N   S+++  + G G+    D  ++    +
Sbjct: 165 SSGAIDRWSFTSPDAEGRTIVLEPQGNAVFNDDESMLRAALQGVGLVKHLDLCMRQHLAS 224

Query: 253 PNLVRIMEDVITPSFTVYFCY-PEALKNTGKLKAFRNFIFLK 293
             LVR+++    P F  +F Y P   +   K++A  +F+  K
Sbjct: 225 GALVRVLQPWCAP-FPGFFLYVPSRAQMPAKIRALMDFLVGK 265


>gi|269968200|ref|ZP_06182231.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827198|gb|EEZ81501.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 301

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 129/292 (44%), Gaps = 23/292 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  VAR  S T A+E+L++  +++SR++  LET +  +LF R A    LT  G K
Sbjct: 7   DDLLLFVSVARYQSLTQASERLNVPLATLSRKLKRLETNLNCRLFNRSAHHFALTTDGEK 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +++   +   L      +       SG ++I+  I++ Q  L+  + EF   +P I I 
Sbjct: 67  YYQLCEPLLLSLNNVTSRIATERQSLSGTIKISAPINMTQMWLKRCVYEFAEQHPKICID 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + N+ I++  +  D + RL   I+   + Q KL +I     A+  YL+  +     ++
Sbjct: 127 LDVQNEKINLVSNRVDVSFRLGDLIEQDWIAQ-KLWSIPFALCASRSYLEQHQPITHPEQ 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-------ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L  H LIT  +       D  W         T D P+     S    N  L +    + G
Sbjct: 186 LVHHRLITVNN-------DSQWKLVNQITNETFDHPLKFQFTS----NDVLLVRDAVIHG 234

Query: 239 SGIALLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GIA +P Y    +  D  NL+ ++         V+  Y +  K   ++ AF
Sbjct: 235 LGIAWIPTYYFHELNHDQHNLLPLLPKWQCSGKEVFIMYRDRDKRPARVDAF 286


>gi|121586696|ref|ZP_01676480.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121549124|gb|EAX59159.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
          Length = 303

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 28/285 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-------YAAPHYLKNCR 178
           + LDN+ +D+     D  IR    ++ SSLI R ++     +       Y AP  +K   
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWGSVRPSSPPYIAPATVKPTF 182

Query: 179 EPLSIQELDKHNLITFGDLIPKCME-DF-----NWLATVDRPIGEPRISCLQVNSYLSIM 232
           +P   ++L +HN + +        + +F     N++  V              ++  ++ 
Sbjct: 183 KP---EDLARHNCLQYAYQTTGATDWEFKGAKGNYIVKVS--------GTFSTDNATALR 231

Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
           +  + G GIA +P  +V     N  LV +  + +     +Y  YP
Sbjct: 232 KAALGGHGIAYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYP 276


>gi|27379103|ref|NP_770632.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27352253|dbj|BAC49257.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 367

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 136/294 (46%), Gaps = 22/294 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +R F  VAR GS   AAE+L ++ +++ R+I+ LE  +G+ +F +   G  LT  
Sbjct: 71  IDWDDVRYFLAVARGGSVRAAAERLGVNHATVLRRIAQLEERLGVHMFEKLPSGYRLTAA 130

Query: 63  GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G ++     ++    H LE T++  ++ SV+  G LR+     L  +LL  +  +F  L+
Sbjct: 131 GEEVLEFADQMETSSHLLE-TRVFGRDQSVR--GLLRVTLAPPLATHLLMPDFADFARLH 187

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-- 177
           PDI+++++   +  +++   AD AIR+        +  RK + +++H    P        
Sbjct: 188 PDIEMEILSFGELANLTNREADVAIRV--------VYDRKTLPLNLHGLKGPELFGAVYM 239

Query: 178 -REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            R+ L+       + + +  +    + D+     V R  G P     +V    + +    
Sbjct: 240 SRDRLAAWRAGAPDPVRWIVISMHGIPDWASEGEV-RTTGGP----FRVTDAGAQIAAVR 294

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  LP ++   +P LVR+    +    TV+       + T +++ F  F+
Sbjct: 295 QGLGITTLPCFVGDADPLLVRVPGTDLHMYGTVWLLTQGETRKTKRVRLFTEFV 348


>gi|99082087|ref|YP_614241.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038367|gb|ABF64979.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 310

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 135/293 (46%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF  VA    F   A ++ LS  S +R I+GLET++G +LF R  R L LT+ G + 
Sbjct: 6   SMQVFVAVAEEEGFAAGARRMGLSAPSATRAINGLETQLGARLFTRTTRRLHLTDVGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L+      + ++  P G LR+    + G+  +   L ++L  YPD++ +L
Sbjct: 66  LEDVRHILTSLQAADDTARGAASAPVGLLRLTCPNEFGRIYILPILLDYLDHYPDMRAEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ ++I  +  D A+R+   + SS+L   K+  +     AAP YL+    P +  +L
Sbjct: 126 VLLDRVVNIVEEGFDVALRIGH-LPSSTLSAVKVGAVRRVLCAAPAYLERYGTPETPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++   ++I    E   W     + I       L V++  +       G G+  +  
Sbjct: 185 SAHRIVAV-NVISSATE---WRFGAQQEIAVRIAPQLCVSTVAAGRDAAREGWGLCRMLS 240

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           Y    +    +L  ++ED    S  ++  + E  +   K+++F +F    ARD
Sbjct: 241 YQAGRDVAEGHLTCLLEDYEPESMPIHLVHTEGRRAPAKVRSFIDF----ARD 289


>gi|330014685|ref|ZP_08307955.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328532829|gb|EGF59610.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 304

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 4/189 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  +   GSF+ AA  L +S+   +  I  LE  +G +L +R  R +  T +GS 
Sbjct: 5   DTLTLFVRIVERGSFSAAAADLGVSRPVATAAIKALEVSLGARLLHRTTRHVRPTAEGSL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   LE      + +    SG +R+    +L + LL   L +FL  YPDI +Q
Sbjct: 65  YYQRCVSILAALEEAN---RSAGGSISGTIRVDVAGNLARTLLLPALPQFLARYPDITLQ 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    +D+D+  +  DC IR    +  S +I R L  +     A+P YL     P +I+ 
Sbjct: 122 IGESERDVDLVREGVDCVIRGGH-LPDSEMICRPLAGLQEITCASPTYLARYGTPHTIEG 180

Query: 186 LDKHNLITF 194
           L  H +I F
Sbjct: 181 LTGHVMIGF 189


>gi|330821977|ref|YP_004350839.1| Transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373972|gb|AEA65327.1| Transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 344

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 127/276 (46%), Gaps = 18/276 (6%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  ++E     L 
Sbjct: 28  ELGLTPAAVSKRLAQMEQRAGVALVNRTTRRMALTPEGEVYLERARRILDEIEQLGELLS 87

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
            S+ +P G LR+  T+  G++ +   +  +   YP++++QL L      ++ D  D  IR
Sbjct: 88  RSNDRPRGLLRVNATLGFGRSAVGPAISRYARRYPEVEVQLQLSVTPPPLTDDSFDVCIR 147

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
             +P   + ++ R+L        A+P YL     P    +L +HN I     I +  E +
Sbjct: 148 FGEP-PDTRVVARRLAPNRRLLCASPAYLAERGMPRKPADLARHNCIG----IRQGDEAY 202

Query: 206 N-WLATVDRPIGEPRIS-------CLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254
             W  T  R  G  R +        L  N     +++ + G GI +  ++ + D   +  
Sbjct: 203 GVWRLTQAR--GAARATEAVRIGGSLTTNDGEIAVKWALDGHGILMRAEWDIHDYLADGR 260

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LV ++    TP+  +Y  YP  L+ + ++++F +FI
Sbjct: 261 LVLVLPGYETPAADIYAVYPRRLQMSARVRSFVDFI 296


>gi|262394854|ref|YP_003286708.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262338448|gb|ACY52243.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 314

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  SFT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVIFSALLKHKSFTAAAKSLGVSVSHVSKQLSQLEASLGIKLVQRTTRSFTPTEAGKTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +V   + +  +E++    + +G +R+  +   G   +   ++E   LYP +Q+++
Sbjct: 68  FHHCEQVVQAVSSATLEMETQRDEVAGLVRLGLSQSFGTLHIIPAIQELRELYPQLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  +   + +    + QR L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMLAEGLDLWVTNNEHLPEGYIAQR-LTDCQFVVAASPDYLLKHDTPTEPDDL 186

Query: 187 DKHNLITFGDLIPKCME-DF-NWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
             HN      LI +  E D+  W  T D+     ++S    V+   ++    + G GIA 
Sbjct: 187 SSHNC-----LIYRSWERDYTGWAFTKDQQELNVKVSGNYSVDLAEAVRDAAIAGWGIAY 241

Query: 244 LPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y++ D      L++++ D   + S   Y  YP       K+ A  NFI
Sbjct: 242 LATYLLGDEFRTGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVINFI 292


>gi|269104590|ref|ZP_06157286.1| transcriptional Regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161230|gb|EEZ39727.1| transcriptional Regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 290

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 128/268 (47%), Gaps = 26/268 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  +    + R G+   AA  L++ Q+++ R+I+ LE+ +  +LF R  +G  LT  
Sbjct: 1   MNWDDTQYLLALGREGTLRKAAASLYVDQATVGRRIAALESHLKCQLFVRSNKGYELTFA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQES----SVKP-----SGKLRIATTIDLGQNLLQGNLK 113
           G +            E T+IEL  S     VK      SG + I+TT  +  + +   +K
Sbjct: 61  GQQAF---------YEATKIELAVSFLVKKVKGFDQQLSGDVVISTTDSVAIDFVTTAVK 111

Query: 114 EFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
           +   + PD++I+L +  +  D++    D AIR  +P ++S LI ++L+   M+ YA+  Y
Sbjct: 112 QIRTIAPDLRIKLDVTTQICDMTKRNVDIAIRNIRP-KNSDLIVKRLLKSPMYLYASEDY 170

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
           + + R   S+  LD  +L+    ++         L+  +  I     S L + S +    
Sbjct: 171 IGHNRPSKSVSSLDDLDLVVHAPMLEANASTLWGLSVENARIALLADSSLLLRSAIK--- 227

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMED 261
               G G+  LP+++ K + NLV I+ D
Sbjct: 228 ---GGIGVGFLPEFMAKKD-NLVSILPD 251


>gi|170734055|ref|YP_001766002.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817297|gb|ACA91880.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 310

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 6/187 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTDEGKLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     SGK+R+++T D G++ L   L EF  L+P +   L 
Sbjct: 67  NCCRQALQALDDADAMLQEGRNVVSGKVRLSSTSDFGRHQLLDWLHEFTTLHPGVTFSLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R+L T      AAP +++    P      D
Sbjct: 127 ASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLATNRRVLCAAPSFVERHGLP-----AD 180

Query: 188 KHNLITF 194
            H+L  F
Sbjct: 181 PHDLARF 187


>gi|261212398|ref|ZP_05926683.1| putative HTH-type transcriptional regulator YcjZ [Vibrio sp. RC341]
 gi|260838329|gb|EEX64985.1| putative HTH-type transcriptional regulator YcjZ [Vibrio sp. RC341]
          Length = 297

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 131/293 (44%), Gaps = 12/293 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   L  F  V + GSFT AA     SQS++S+ +S LE  + +KL  R  R LTLT
Sbjct: 1   MRENLSDLITFLNVVKEGSFTRAAALAGTSQSAVSQTVSNLEQRLQLKLLNRTTRSLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G KL  + +     +     +L E    PSG +RI+      Q +L   L   +  +P
Sbjct: 61  EAGEKLVTLVAPAIEDINIGLEQLGELRDTPSGTVRISADEYAIQQVLWPKLAPVIKQFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCRE 179
           +I ++LI D   +DI+    D  +R R  + +  +I  ++   H M    +P    +C  
Sbjct: 121 EINLELITDYGLVDIAKGGFDAGVR-RGGLIAKDMIAMQISNEHKMSVVVSP----DCSP 175

Query: 180 PLSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
             ++ ++  D  +L      +P   ++F W+ +VD      R+   + VN    ++Q  +
Sbjct: 176 QDTLPKVPSDLVSLPCINLKLPTHGDNFPWIFSVDEQEYRIRVKGQVVVNGINQVVQAAL 235

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G G A +P+ +V    D+  L+ ++          Y  Y   L+++   K  
Sbjct: 236 DGYGYAYVPEVLVAKLIDSGQLISVLPSYCITHSGYYLYYTSRLQSSAAFKVI 288


>gi|213970374|ref|ZP_03398503.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|302132570|ref|ZP_07258560.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213924845|gb|EEB58411.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 307

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 15/241 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  ++SR+++ LE ++G++L +R  R ++LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAVSRRLAALENDLGVRLVHRTTRSVSLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E  +  L+  +   SG LR+      GQ ++   L E +L  P + I L 
Sbjct: 66  PHAKTMLQASEAARATLKADAGTASGILRVTAPSVFGQTVIMPLLPELMLENPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL     P  + +L 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLMRRGTPTVLDDLR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  I    +         W  T D   GEP           NS  ++      G G+A+
Sbjct: 185 HHPCIALHGMP-------YWSFTRD---GEPVTIRAQGSFSANSVEAVRTASKQGLGLAM 234

Query: 244 L 244
           L
Sbjct: 235 L 235


>gi|167035646|ref|YP_001670877.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862134|gb|ABZ00542.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 313

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 120/248 (48%), Gaps = 7/248 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L+VF  V   GS + AA+Q+  + S++SR +S LE ++G  L  R  R + LTE+G  
Sbjct: 21  EELQVFVAVIDCGSISAAADQMGQTPSAVSRTLSRLEGKLGTTLVNRTTRRMDLTEEGRF 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               +  +  +++  +  L  +   PSG+LRI        + +   + EF   YP I+++
Sbjct: 81  FLERSRLILEQMDEMEERLSMNRQTPSGRLRINAAAPFMLHAILPWIGEFRRQYPGIELE 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D+  ID+     D AIR+ + +  SSL  R L    +   A+P YL+    P  +++
Sbjct: 141 LNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARNLGCSPVQVLASPAYLEQHGTPQRVED 199

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+ F    P+ +  +    A  DR    P    L  +S  ++ Q  + G GI  L
Sbjct: 200 LANHCLLGFSQ--PESLNHWPLRHAQGDRFSIRP---ALLASSGETLRQLALAGEGIVSL 254

Query: 245 PDYIVKDN 252
             ++  ++
Sbjct: 255 SHFMTHED 262


>gi|323497111|ref|ZP_08102131.1| putative transcription regulator [Vibrio sinaloensis DSM 21326]
 gi|323317686|gb|EGA70677.1| putative transcription regulator [Vibrio sinaloensis DSM 21326]
          Length = 312

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 141/292 (48%), Gaps = 9/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DK+  F  V RSGSF  A+ Q  +S ++ SR +  LE  + ++L  R  R L  T+ G  
Sbjct: 14  DKIVFFCAVVRSGSFREASLQQGISPAAGSRWVKELEASLSVELIKRSTRQLVPTQAGQL 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +  S +   + +   E+Q  + +  G++RI++T    +  L   + E++ ++P +  +
Sbjct: 74  LFQRFSPMLPDINSLCEEVQNLADEQLGEIRISSTPLFARQYLTKIVAEYIKMHPKVNFR 133

Query: 126 LILDNKDID-ISMDYA--DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++  + D +++D+A    A    +P   S L++++++   ++  A+P Y++   EP++
Sbjct: 134 IFIEAGEFDPMNIDFAFRASASYEGEPQSDSLLVRKRMLREPLYLCASPIYIEQHGEPVN 193

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L +H  +    L+      F     +D    +  + C   NS + ++   +  +G+A
Sbjct: 194 PQQLKQHRCLYARTLLDGTRWCFERDGNIDIVTIQDTLEC--DNSEM-LLDLALADAGVA 250

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LP  +V D   +  L+++M D    SF V   Y        +   F+ F+ 
Sbjct: 251 YLPHSLVADQFESGRLLQVMADYQCASFDVNMFYRPRTPMPERCSGFKRFLL 302


>gi|262173670|ref|ZP_06041347.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
 gi|261891028|gb|EEY37015.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
          Length = 302

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 128/305 (41%), Gaps = 24/305 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +  R F  V   GSFT AA  L L+Q  IS+ +S LE +VG KL +R  R + +T
Sbjct: 1   MELDLNAARCFVKVVELGSFTQAANLLGLTQPGISKAVSRLEAQVGAKLIHRSTRQVRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    + +  E    EL+ S   P G L+++    L  +L+   +K     YP
Sbjct: 61  EDGQLFMKRIQPLIYGFEEAHNELKFSKTTPVGCLKLSAPSALSHSLMMPIVKLLTERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I+L L ++ + +  +  D  +R    I    L+   L        A+P YL     P
Sbjct: 121 DLRIELSLTDQKVHVFDEGYDAVLRF-GSIDDERLVAFALQDAEWGTVASPEYLAKQGIP 179

Query: 181 LSIQELDKHNLITFG-----DLIP-------KCMEDFNWLATVDRPIGEPRI-SCLQVNS 227
               EL   N +        + +P       K +E    +  V    G+P I + LQ   
Sbjct: 180 HHPDELRNFNCLHVKARGQTNTLPWRFRIDGKGIEYRQLVGNVCFDHGDPLIDAALQGLG 239

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            + ++  CV+   +A         N  L  ++ D    + + +  YP + + + KL   +
Sbjct: 240 VVQVLS-CVVADKLA---------NGELKEVLTDFRPQAHSFHLLYPPSRQRSAKLTVLQ 289

Query: 288 NFIFL 292
             + L
Sbjct: 290 EALIL 294


>gi|206578654|ref|YP_002239297.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|290510793|ref|ZP_06550163.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206567712|gb|ACI09488.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|289777509|gb|EFD85507.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 342

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 129/291 (44%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R +  +  +GS + AA Q+  +Q+++SR++  LE  +G+KL  R    + LT+ G + +
Sbjct: 44  MRTYIRIIEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKLILRTTHAMKLTDDGERCY 103

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +V       + +L+ +  +P G LR+      GQ  L   L  FL  +P + ++ +
Sbjct: 104 RHARQVVDAWLALEDDLRIADDQPVGVLRVRAPHAFGQQQLLAPLVAFLQRHPQLSVEWM 163

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D   D  DCAIR+   +  ++ +   L  +     A+P  L       S++ L 
Sbjct: 164 LNDNTVDFLSDNIDCAIRVGAEVDPAT-VSVLLAEVPRCVVASPELLAKYPPLTSLEALS 222

Query: 188 KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               I        ++  + +E    ++T   P       CL  +S        + G G+A
Sbjct: 223 GLPWIAINTFYQHEVRLRHLESGQIVSTAITP-------CLSTDSLYVARNTALAGLGVA 275

Query: 243 LLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  + V ++    R++E        S  V+  YP A     +L+ F + +
Sbjct: 276 MVSSWTVVEDIAAGRLIELFPQWRPASLPVHLVYPWARYYPTRLRKFLDLM 326


>gi|167586305|ref|ZP_02378693.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 327

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 128/286 (44%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA QL +S + ++R I+ LE  +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEQQSFRRAAHQLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTEAGVRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  +  +P G LRI  +  L    L   +  F   YP +++QL 
Sbjct: 67  DGCRALLEEFDHLEASVVHAVREPVGTLRIVASGTLSPLALTPLVNGFQRRYPQVRVQLT 126

Query: 128 LDNKDIDI-SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+    Y    +   +   + +LI   L    + A AAP YL+   EPL   +L
Sbjct: 127 VAEGPLDVLDAGYDVGVVTGNRFDGNPALIGHALSPNTLVACAAPAYLQRRGEPLVPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC-VLGSGIALLP 245
            +H+ +    L P            D  +    +  +   + LS++Q   V GSGIA+LP
Sbjct: 187 PRHDWVA---LAPHQHAPAWRFVGPDDAVHPVTVRPVYTVNQLSLVQAATVAGSGIAVLP 243

Query: 246 DYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           + +V    D+  LVR++    +  P   +   YP       + ++F
Sbjct: 244 ENVVADALDSGALVRLLPGYRIDDPDTQLSLVYPNRQFVPARTRSF 289


>gi|149912095|ref|ZP_01900684.1| Putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
 gi|149804832|gb|EDM64871.1| Putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
          Length = 293

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 126/283 (44%), Gaps = 31/283 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  SG F+ AAE L +  + +SR +S +E ++G+ +  R  R + LT++G +
Sbjct: 6   DDLEILLTVVDSGGFSAAAEALDIQVARVSRAVSKVEKQLGVSILNRTTRRVELTDEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +++  + EL      P G+LR+        + L   ++ F  +YPDIQ++
Sbjct: 66  FVDSIRVGLLQIQQAEEELITRGELPKGRLRVDAASPFVFHQLVPLVQAFNKVYPDIQLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ + +  S+L  R L    ++  A+P YL     P    +
Sbjct: 126 LTSNEGFVDLLEKKTDLAIRIGQ-LTDSTLHARLLGKSLLYIVASPDYLARRGIPKQTND 184

Query: 186 LDKHNLITFGDLIPKC-----MEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  H  I F    PK      ++ F  LA TV    GE            ++ Q  + G+
Sbjct: 185 LSTHETIGFSG--PKILNHWPLKGFETLASTVTSSNGE------------TVRQLTLAGN 230

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           GIA L  ++VK +    R+          V    P+ L NTG+
Sbjct: 231 GIACLSGFMVKKDIEEGRL----------VALLEPDKLINTGR 263


>gi|330819589|ref|YP_004348451.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327371584|gb|AEA62939.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 329

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 126/277 (45%), Gaps = 16/277 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +  SGS + AA  L  +Q ++SR++  LE  +G++L  R    + LT  G +  
Sbjct: 32  METFVRIVESGSLSAAAALLRTTQPTVSRRLQALERSLGVRLLQRSTHSMRLTVDGERAF 91

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+     + + +L+ +  +P G LR+      GQ +  G L  FL  +P + ++ +
Sbjct: 92  KRAKELLASWASFEADLRGAQQEPEGHLRVTVPHAFGQQIFVGPLIGFLREHPRVSVEWL 151

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE-- 185
           L ++  D      DCAI++ + +   S++  ++  +     AAP   ++ R P + +E  
Sbjct: 152 LQDEVHDFIGTGIDCAIQIGE-VTDPSVVAIRIADVARFVVAAPSMFEDGRIPATPEELA 210

Query: 186 -LDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            LD  +L T+   +++ +            R   +PR+S    ++  ++    + G G+ 
Sbjct: 211 ALDWLSLRTYYRNEVVLRHRRS----GETQRFTIQPRVST---DNLFALRSAALHGMGVG 263

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
           +   +++ +      LVR+  D       V+  YP A
Sbjct: 264 IGSSWLLAEELEAGRLVRVAPDWEAAPLPVFLVYPHA 300


>gi|298292886|ref|YP_003694825.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929397|gb|ADH90206.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 305

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 111/257 (43%), Gaps = 13/257 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V R+GSF+ AA +  ++ S+I RQI  LE ++G+ LF R  R LTLT+ G +L 
Sbjct: 9   LATFVDVVRAGSFSGAARRRAVTPSAIVRQIDALERDLGVALFIRSTRALTLTDAGQRLC 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +L  T  E+       SG LRIA     G+  +   +      +P + + L 
Sbjct: 69  ERALRHLDELADTHAEVAAFDGSVSGTLRIACFPTFGKRYVLPVVAALQTEHPALHVDLD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D   +  D  IR+   +  S+LI  +L  +     A+P YL     P S  +L 
Sbjct: 129 LTERLADPVAERLDAVIRM-GALADSTLIATRLAPLTRLLVASPAYLSREGTPSSAADLS 187

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS--YLSIMQYCVLGSGIA 242
            H L+      DL+        W   +  P G      +   S  + ++      G GIA
Sbjct: 188 SHRLLDKLHGADLL-------GWRDVLGCPAGHAGNGTVAFRSDDFEALRAAAEAGLGIA 240

Query: 243 LLPDYIVKDNPNLVRIM 259
           +L  ++V  +    ++M
Sbjct: 241 ILSSWVVGPDVRAGKLM 257


>gi|289674815|ref|ZP_06495705.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
          Length = 315

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 9/271 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLGVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHVRMGCTEGFGSFFITPQLSHFLDSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N     
Sbjct: 131 ISLDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLGLYATQAYLDNHSPIK 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I++ D +    E       +     + R + + +  Y + +Q    G  +
Sbjct: 190 HKADLSEHVFISYVDDLAFSSELLYMSNLLPNAQAQLRSTSV-IAQYTAALQ----GRAL 244

Query: 242 ALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
           A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 245 AILPCFLAAQDPRLLPVLREEVNITRQFWMY 275


>gi|262401763|ref|ZP_06078329.1| LysR family transcriptional regulatory protein [Vibrio sp. RC586]
 gi|262352180|gb|EEZ01310.1| LysR family transcriptional regulatory protein [Vibrio sp. RC586]
          Length = 322

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 5/241 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VA   SFT AA  L L QS++SR+I  +E  + ++LF R +R + LTE G +
Sbjct: 26  EDLHLFVQVANQLSFTGAANILDLPQSTVSRKIKQMEETLEVRLFERTSREIFLTEPGRQ 85

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  +  +  + E  +  L++ S +PSG++ +       + L+   L  F+  +P+I+I 
Sbjct: 86  FYEHSRTIIQEFEDAKSFLRDYSTQPSGEITLYCMPYFTRLLVADFLPIFIKTFPEIRIT 145

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                  +   +   D    L  P +  +++ R+L ++    YA+P YL     P    E
Sbjct: 146 SRSFEPALMEQIQEGDLIFYLFPP-RDPNMVSRRLFSVSRRFYASPEYLLKHGHPSHPCE 204

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN + F + +    E   W    +R +   P       ++  + M+  + G+GI  +
Sbjct: 205 LKNHNCLRFDNRVSPVEE---WTYLEEREVKSVPIQGSFTCDAVDATMELALKGAGICWI 261

Query: 245 P 245
           P
Sbjct: 262 P 262


>gi|158422940|ref|YP_001524232.1| regulatory protein [Azorhizobium caulinodans ORS 571]
 gi|158329829|dbj|BAF87314.1| regulatory protein [Azorhizobium caulinodans ORS 571]
          Length = 300

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 7/211 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD    + + V   V  +GSF  A E L L+Q ++SR ++ LE  +GI++F R AR +
Sbjct: 1   MAFDSRLLNGIGVVSAVVEAGSFARAGEALGLTQPAVSRAVARLEQRIGIRIFNRTARSI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT++G + +   + +   +E   +    +     G+LR+      G  +L   L  FL 
Sbjct: 61  SLTDEGRRYYEAVAPLIAGIEDATLSAGRAKALVRGRLRVNVDGAFGHFVLTRRLGAFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPD+ + + + +   D+  D  D A+R   P + S+L    L+   +   A+  Y+   
Sbjct: 121 QYPDLAVDVAVRDAMGDLVGDGFDVAVRFGYP-EPSNLRAELLLETRVLTCASASYIARY 179

Query: 178 REPLSIQEL-DKHNLITFGDLIPKCMEDFNW 207
             P   ++L + H  +   D  P     + W
Sbjct: 180 GAPSHPRDLVNGHQCVLLRD--PSTGRPYEW 208


>gi|33600024|ref|NP_887584.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33567622|emb|CAE31535.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 293

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 112/246 (45%), Gaps = 13/246 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR G+ T AAE+L ++ S+IS+Q+  LE E GI+L  R  R +  T +G++L 
Sbjct: 10  LRAFEAVARLGNMTRAAEELSVTHSAISKQVQALEEEFGIQLLRRMPRAIEPTPEGARLA 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  +E    +L+       G L ++ +  +    L   L  F  + PDI +++ 
Sbjct: 70  ATLGTAFGLIEAGINQLR------PGPLSLSCSASIMMRWLIPRLANFKKMRPDIDLRVS 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186
            D+  +D+  +  D AIR         ++ + L+   +    +P Y  +   PL ++ +L
Sbjct: 124 ADHGPVDLLREGIDVAIRNNVVPTPQDVVIKPLMREWVGPVCSPEYASSV--PLRALADL 181

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               L+T     P    D+   A +    GEP         +  ++     G G+A+ P 
Sbjct: 182 GAARLLTTSSR-PDAWSDW---AALSGWAGEPLAEHESFEHFYLVLHAAACGLGVAMAPR 237

Query: 247 YIVKDN 252
           ++V D+
Sbjct: 238 FLVADD 243


>gi|238792798|ref|ZP_04636429.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           intermedia ATCC 29909]
 gi|238727906|gb|EEQ19429.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           intermedia ATCC 29909]
          Length = 305

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 133/291 (45%), Gaps = 22/291 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHR 68
           VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT  G + L R
Sbjct: 9   VFVAIVERGSMIAAAEALEMSRAMVTRYLAEMEQWAGARLLHRTTRKLSLTHAGETTLER 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   IE Q S  +  G LRI+ +  LGQ+ L   + ++L  YP + + L +
Sbjct: 69  CRRMLEFAQDMDVIEGQGSD-ELRGLLRISCSQSLGQSALVIAVTDYLRRYPQVAVDLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L T H    A+P YL     P +  +L  
Sbjct: 128 NNRAVNLVEERIDLALRITNELD-PNLIARPLSTCHSVVCASPAYLSAKGIPKTPYDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------GSGIA 242
           HN +T+     K +  F+         GE   S + V+  LS  +  VL      G+GI 
Sbjct: 187 HNCLTY-SYFGKSLWHFDLQ-------GEK--SAVAVSGNLSANESVVLLSGALEGAGIT 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L P Y         +LV ++      +  +Y  Y    +    L+   +F+
Sbjct: 237 LQPSYSAAPYIARGDLVSLLPGYQPQAMGIYGIYTSRRQMPATLRTMLDFL 287


>gi|254253805|ref|ZP_04947122.1| regulatory protein LysR [Burkholderia dolosa AUO158]
 gi|124898450|gb|EAY70293.1| regulatory protein LysR [Burkholderia dolosa AUO158]
          Length = 375

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 139/299 (46%), Gaps = 23/299 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +R F  V  +GSF+  A+++H+S S+I+R+++ +E  +G+ L +R    +TLTE G+
Sbjct: 64  FGAMRAFVRVVETGSFSAVAKEMHVSTSTIARKVTAIEDALGVPLLHRSTHSVTLTEAGN 123

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+
Sbjct: 124 IYLERAVTLIADLDDTLRVVAELNARPSGPLKLTAPVAFGRRHLAPLVAPFLARYPTIQL 183

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +   D+     D  I   +    + ++ R L        A P YL  C  P +  
Sbjct: 184 DVRLTDNHNDLVAGGFDLDIHEGENYLDNLVVHR-LSRNDSILCATPGYLDRCGRPSTPD 242

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGS 239
           +L +HN + +  + P+   D +W    +   G+ R S L   + ++     +++    G 
Sbjct: 243 DLKQHNCLRY--VHPE--GDPHW----ELVNGDARHSLLPAGNLVTDHSELLLEATCAGL 294

Query: 240 GIALLPDYIVKD-------NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA    ++V+D          L R  + + +T  F +Y  Y    +++ KL+  + F+
Sbjct: 295 GIAEFEIWLVRDLLASGQLEAVLPRYRLHNRLTGEF-IYIAYLANRRSSAKLRVLKEFL 352


>gi|104780518|ref|YP_607016.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95109505|emb|CAK14206.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 299

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 127/286 (44%), Gaps = 15/286 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V    SF  AA +L +S ++++R +S LE ++G+KL  R  R + LTE G +  
Sbjct: 7   MKVFVAVGELESFAAAARRLAISPAAVTRAVSALEEQLGVKLLLRTTRSVRLTEAGGRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +   +          +  P G L +   I  G+  +   +  +L  YP++ +   
Sbjct: 67  EDTRHILASIVEANEAAAGINAAPKGDLAVTAPILFGKKFVMPCIVRYLQQYPEVDVSAY 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D A+R+ + +  S L   ++  +     A+P YL+    P    EL 
Sbjct: 127 FLDRVVNLVEEGMDVAVRIGQ-LPDSGLKALRVGKMRRLLCASPEYLERHGTPRHPSELQ 185

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +H +I  G L P+     +W    +D P     +PR   L V S  + +     G GIA 
Sbjct: 186 RHEVIAAGTLSPRT----DWRFGAIDDPTLIRMKPR---LTVTSNDAAIAAASAGLGIAR 238

Query: 244 LPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L  Y V D     R   I+ +     + ++  + E+   + K++ F
Sbjct: 239 LLSYQVADEVAAGRLQVILAEYEEAPWPIHILHRESKYGSTKVRTF 284


>gi|24374874|ref|NP_718917.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24349572|gb|AAN56361.1|AE015773_6 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 312

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGHL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++Q
Sbjct: 66  LYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMAKHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLVASPDYIAKHGEPSRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  L
Sbjct: 185 LVDHNCLVYQG---EWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVYL 241

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV +++D  +T    +   YP       K+ AF  FI
Sbjct: 242 ASYLMEDEIAKGTLVPLLKDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFI 291


>gi|134292663|ref|YP_001116399.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135820|gb|ABO56934.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 348

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 138/298 (46%), Gaps = 12/298 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VAR GSFT AAE L +S +S S  +  LE  +G  L  R  R + LT +G +  
Sbjct: 8   MSVFSQVARLGSFTAAAEMLGISAASASTLVRRLEEHLGATLLQRSTRCVRLTTEGEQYQ 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  Q +L  +     G+L +    ++  ++L   L  F   +P++ +++ 
Sbjct: 68  EHCQRILGEIELMQQQLSGAGKIARGRLAVDLDQEVAHSVLP-FLPVFRANHPEVGLRVD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +      +  +  DCA+ + + +  SSL  R++   H    A+P YLK    P+    L 
Sbjct: 127 VGGDADGLIANGVDCAVVVGQ-LADSSLRSRRVGHFHAVTVASPDYLKARGTPVDPDSLH 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H++I +       + +F +  TVD    E R+     + VN   S ++Y V G GIA +
Sbjct: 186 CHDVIHYTPRRFGPVREFRY--TVDG--AETRLKLAERISVNDVRSAVRYAVEGVGIAQV 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            + +V +      LV I+ +       +   YP+  +    ++AF +++  + RD + 
Sbjct: 242 SERMVAEELARGTLVSILGEYGPAPLPISVLYPDRRQVPMSIRAFIDWMQTQLRDLEI 299


>gi|304412065|ref|ZP_07393675.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307305960|ref|ZP_07585706.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304349615|gb|EFM14023.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306911453|gb|EFN41879.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 306

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 124/278 (44%), Gaps = 21/278 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA+ GS+T AA+ L ++ S++S+ I  LET +G KL +R  R ++LT  G   
Sbjct: 8   EIRHFVTVAQLGSYTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        L+  Q  L      PSG++R+   +  G+  +   L      YP +++ +
Sbjct: 68  LKDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLSLSQKYPKLELSI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++  D+  D  D A+R+ +   +  L+ R+L        A+P Y      P    +L
Sbjct: 128 TFNDRAADLFNDGIDLAVRVGQLGDTVDLVARRLGEQRRVICASPAYFARFGTPKDKADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWL--------ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++H  I    L     +   WL           D P+      C       +I+   + G
Sbjct: 188 NQHQCIVGWPL----GQQHRWLLKNEDGIIEAYDIPVRHEIADC------EAILAATLAG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            G+A +P ++V+D      L+ +++++ +    ++  +
Sbjct: 238 VGLAQVPIWLVEDYLKTGELISVLDELASDDTPIHLIW 275


>gi|262089562|gb|ACY24661.1| LysR family transcriptional regulator [uncultured organism]
          Length = 315

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 13/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L L +S +SR+++ LET +G++L  R  R L+LTE G
Sbjct: 3   DTNDMLYFAEVVERGGFAAAGRHLGLPKSKLSRRVAELETRLGVRLLQRTTRKLSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    V    E     +++   +P G +RIA  + L Q+ L   +  FL  +P ++
Sbjct: 63  EVYLRHCLAVRDAAEAAAEAVEQVQTEPRGTIRIACPVTLAQSTLGPIMPLFLARHPLVK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + + + N+ +D+  +  D A+R+R  +  S SL+ + L   +    A+P  +    +P  
Sbjct: 123 VDMRVSNRVVDLVEEGIDVALRVRSTLDDSGSLVVKTLGGSNTFLVASPLQIARQGKPGL 182

Query: 183 IQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240
             +L   + +    +  K  +            + +PR     V   L  +++ VL G+G
Sbjct: 183 PDDLATMDTLAMSSIDGKATLLLLGPSGARHTLVHQPRY----VADDLLTLKFAVLQGTG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  LPDY+ +   ++  LV ++     P    +  YP      G + A R F+
Sbjct: 239 LCFLPDYMCRRELEDGRLVHVLPGWAPPRGIFHAVYPS---RRGMVPAVRRFL 288


>gi|319427161|gb|ADV55235.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 313

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGHL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++Q
Sbjct: 66  LYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMAKHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLVASPDYVAKHGEPTRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  L
Sbjct: 185 LVDHNCLVYQG---EWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVYL 241

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV +++D  +T    +   YP       K+ AF  FI
Sbjct: 242 ASYLMEDEITKGTLVPLLKDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFI 291


>gi|70728889|ref|YP_258638.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343188|gb|AAY90794.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 306

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 133/260 (51%), Gaps = 36/260 (13%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SF+H AE+L  +Q++IS +I+ LE E+G+KLF R +RG++LT +G K+ 
Sbjct: 6   LETFVWVARLKSFSHTAEKLFTTQAAISSRIAVLEGELGVKLFLRDSRGVSLTPEGVKVL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +  +Q  S K  G++RI     +    L   + E +  YP ++I+L+
Sbjct: 66  EHAEQMLDTLQVLKQSIQAPSSK-VGRVRIGVMDTVIHTWLSPLVAEMMDHYPQVEIELV 124

Query: 128 LDNKDIDISMDYADCAIRLRKP-----IQSSSLIQRKLVTIHMHAY-----AAPHYLKNC 177
            D      S++  D   +L+K      +Q+  L Q  + ++ + +Y     AA + + N 
Sbjct: 125 ADT-----SLNLCD---QLQKGFLDLVLQTDLLRQESIRSLELASYPMGWIAASNSIYN- 175

Query: 178 REPLSIQELDKHNLITFG-DLIP-----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R+  ++ EL +  ++T+  + +P       M+    LA        PR++C  VNS  +I
Sbjct: 176 RDYANVAELARERIVTYSKNSLPHQQVLSLMQANGVLA--------PRLNC--VNSVSAI 225

Query: 232 MQYCVLGSGIALLPDYIVKD 251
            +    G GI  LP  +V++
Sbjct: 226 TRLLRDGFGIGALPPVLVRE 245


>gi|88801143|ref|ZP_01116688.1| putative LysR-family transcriptional regulator [Reinekea sp.
           MED297]
 gi|88776124|gb|EAR07354.1| putative LysR-family transcriptional regulator [Reinekea sp.
           MED297]
          Length = 300

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 131/298 (43%), Gaps = 17/298 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +A  GSF+ AA +L    S++SR+I+ LE+++G +L  R  R L+LT+ G
Sbjct: 2   DLQALLWFVEIAHCGSFSEAARRLVEPSSNLSRRIAKLESDLGERLLTRTTRALSLTDAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L  +  ++    +   ++ ++S  +P+G LR+       +  L   +  +   +P +Q
Sbjct: 62  RQLLPLAEQMLTDQQAV-LDWRDSQQEPNGTLRVTAPGSFARGPLTPWVIRYRQQFPSVQ 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI  N  ++      D A R + P+  S+L  ++L +IH   + +P +L        I
Sbjct: 121 VELIHSNDYLNFQAHRLDFAFR-QGPLPDSTLHAKRLFSIHYGVFVSPGWLTKHGPVTEI 179

Query: 184 QELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             L+ H +IT G    ++P       W           +IS L  + +   +Q    G G
Sbjct: 180 ARLNAHQVITTGATSAVLPWWFRSGVWQPA--------QISYL-FDDFDQCLQAAAEGEG 230

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                 Y  +    +  LV ++ +        +  YP     + K  +F+  I  + R
Sbjct: 231 PTFASHYQAQPWLASGELVEVLAEERADPIGFHLVYPTRTHRSRKSLSFQQHIEQEVR 288


>gi|288936152|ref|YP_003440211.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890861|gb|ADC59179.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 311

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 129/291 (44%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R +  +  +GS + AA Q+  +Q+++SR++  LE  +G+KL  R    + LT+ G + +
Sbjct: 13  MRTYIRIIEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKLILRTTHAMKLTDDGERCY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +V       + +L+ +  +P G LR+      GQ  L   L  FL  +P + ++ +
Sbjct: 73  RHARQVVDAWLALEDDLRIADDQPVGVLRVRAPHAFGQQQLLAPLVAFLQRHPQLSVEWM 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D   D  DCAIR+   +  ++ +   L  +     A+P  L       S++ L 
Sbjct: 133 LNDNTVDFLSDNIDCAIRVGAEVDPAT-VSVLLAEVPRCVVASPELLAKYPPLTSLEALS 191

Query: 188 KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               I        ++  + +E    ++T   P       CL  +S        + G G+A
Sbjct: 192 GLPWIAINTFYQHEVRLRHLESGQIVSTAITP-------CLSTDSLYVARNTALAGLGVA 244

Query: 243 LLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  + V ++    R++E        S  V+  YP A     +L+ F + +
Sbjct: 245 MVSSWTVVEDIAAGRLIELFPQWRPASLPVHLVYPWARYYPTRLRKFLDLM 295


>gi|170698300|ref|ZP_02889376.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136791|gb|EDT05043.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 327

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 121/282 (42%), Gaps = 14/282 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT 
Sbjct: 26  GYRFELMETFVRIVEAGSLSAAAAQLHTTQPTISRRLQALERSLGMRLLQRTTHAMRLTV 85

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      E+       + +L+ +  +P G LR+A     GQ    G L  FL  YP 
Sbjct: 86  DGERCFTRAKELLTNWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVGPLARFLRDYPR 145

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ +L ++  D      DCAI++ +P    S++  +L  +     AAP  L     P 
Sbjct: 146 VSVEWLLQDEVRDFVGSGIDCAIQVGEPTD-PSVVAIRLSKVPRFVVAAPSVLNGADVP- 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVL 237
              + D    + +  L      +     TV     R    PRI+    N Y ++    +L
Sbjct: 204 --ADPDALAALPWLALRTYYRTELTLTHTVTGDTRRIAMRPRITT--ANLY-ALRSAALL 258

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
           G G  +   +++ D+     LV +  D       VY  YP A
Sbjct: 259 GVGACVGSSWMLADHLARGELVHLAPDWYAAPLPVYMTYPHA 300


>gi|149189711|ref|ZP_01867993.1| putative transcriptional regulator protein [Vibrio shilonii AK1]
 gi|148836523|gb|EDL53478.1| putative transcriptional regulator protein [Vibrio shilonii AK1]
          Length = 296

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 16/248 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  V   GSFT AA  L L ++++SR+I+ LE  VG +LF+R  R L+LT  GS   
Sbjct: 6   LKLFTKVVELGSFTAAANALDLPRANVSRRINELEKAVGSQLFHRTTRSLSLTNSGSTYF 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL- 126
              ++     +  Q  L  S    +GK+++    +   +LLQ  L EF   YP+IQ+ + 
Sbjct: 66  DEITQAIELFDRAQQSLSSSRDMLTGKIKLGVLPET-YDLLQPILFEFHDKYPEIQLDIR 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N   +I     D AI     I  S ++ RK++       A+P Y++      S+ EL
Sbjct: 125 SISNGFNEIFQQGLDIAIH-GGTIFDSDIVARKVIQYRRALVASPEYVEEFGALESLDEL 183

Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           D+H  I F    GD+      D  W    D      + S +  NS   I    + G GI+
Sbjct: 184 DQHKCICFRWPSGDI------DSQW--HFDSGTASVKASLI-ANSVGFIKGATIRGRGIS 234

Query: 243 LLPDYIVK 250
            LP  +++
Sbjct: 235 FLPTMMIQ 242


>gi|126737841|ref|ZP_01753571.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126721234|gb|EBA17938.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 304

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 136/297 (45%), Gaps = 22/297 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    + R GS + AAE+L L+Q ++SRQ+  LE ++G++L  R  + L+L+E+ +K++
Sbjct: 14  LRSLEALDRLGSASAAAEELSLTQGAVSRQLKTLEAQIGLQLIERKQKKLSLSEE-AKIY 72

Query: 68  RVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               E+   LE   Q  L+  S   +G L +A     G   L   L +F  L+PDI I +
Sbjct: 73  --AEEIRQALEQIAQATLRLQSAPLAGTLNLAILPAFGMRWLMPRLPQFSRLHPDITINM 130

Query: 127 ILDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                  + S +  D AI   K   P   S L++ +    H+    AP       E  + 
Sbjct: 131 STRLNQFNFSTEAFDAAIHFGKSDWPGTESLLLKSE----HLIPVCAPQLAPEKTE-FTT 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +E+ +  L+      P    D  W+    +            + + +I Q  + G G+AL
Sbjct: 186 REILQLPLLHI-QTRPNAWRD--WVQAQGKTEEIENFGGTTYDQFATITQAALHGLGVAL 242

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LPDY+ + +    R+    + P+ T      Y  +P++   +  LK FR+++  +A+
Sbjct: 243 LPDYLAEQDLATGRL--KALWPNATETKGAYYLVWPKSKSRSPALKTFRSWLAEQAQ 297


>gi|221068492|ref|ZP_03544597.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713515|gb|EED68883.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 314

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F      GS   AA QL +S ++ S+ I+ LE E+G +L  R  R + LTE G +  
Sbjct: 7   IETFVKALEGGSIASAARQLGISPAAASQNIARLERELGTRLITRTTRSMALTEAGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + V  +LE  Q +L     +  G+LRIA     G+++L   L  F  L+P ++++L+
Sbjct: 67  ARVAPVLGELEKAQSDLSLIHGELQGRLRIACMSAFGRHMLAPLLPAFTALHPRLELELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D ++R R  ++    + R L +      A+P YL+    P + QEL 
Sbjct: 127 ITDRHVDVLKEDVDISVRYRDVLEPGMSV-RLLASAPRILCASPQYLQQHGRPQTAQELL 185

Query: 188 KHNLITF 194
           +H  + +
Sbjct: 186 EHACLLY 192


>gi|77460216|ref|YP_349723.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384219|gb|ABA75732.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 318

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 118/251 (47%), Gaps = 10/251 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V  SGSF+ A+ +  L+ S+++R+I  LE+ VG +LF R    +  T  G  
Sbjct: 8   EQLGLFLDVLESGSFSAASRRHPLTPSAVARRIDSLESAVGSQLFIRSTHAVRATPAGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP--DIQ 123
                  +  +L+  + E    S  P G +R+      G+  L   + +FL+LYP  D+Q
Sbjct: 68  FAERARRIVAELQLARAEAVSLSSAPEGLIRVDAPAAFGRRHLAPVIADFLVLYPGLDVQ 127

Query: 124 IQLILDNKDIDIS-MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + LI    D+D S +   D  +R  + +  + L+   L ++   A A+P YLK    P  
Sbjct: 128 LHLIDSFVDMDGSNLGKVDLVLRAGQ-MADTRLVATPLASMVRIACASPDYLKRRGVPSE 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +L +H+ + +  L P     F W    D    +  P    +  N+  +++   + G G
Sbjct: 187 PAQLSEHDGLDWDGLAPP----FAWRFEQDGQMQLHRPARVRMSANNAEALVCGALAGLG 242

Query: 241 IALLPDYIVKD 251
           IA LP ++  +
Sbjct: 243 IAHLPTWLASE 253


>gi|86144352|ref|ZP_01062684.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85837251|gb|EAQ55363.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 310

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 17/262 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G  ++
Sbjct: 13  LASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEKALSVKLFERTTRTLIITQAGQLVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              S V        +EL  S   +P+G + +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 73  D-QSVVMINAAQQAVELSTSDHTEPAGSITVAAPEAFLNSVLQPFVVPFLNQYPEIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DIDI     D A RL  KP    SL+ ++L   ++   A+P YL     P    E
Sbjct: 132 RAADGDIDILRQGIDIAFRLTDKP--DESLVLKELGKTNLVLCASPDYLDAKGIPHHPTE 189

Query: 186 LDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H+ +   +     + DF   +   TV      P      VN     ++    G G+ 
Sbjct: 190 LSEHDCLYLAETDKDHIWDFLKDDEFHTV------PVTGRYAVNHSQMRLKGVKEGLGVG 243

Query: 243 LLPDYIVKD---NPNLVRIMED 261
           +  D++++D     ++V+++ED
Sbjct: 244 IFHDFVIQDALAEGSVVQVLED 265


>gi|307725924|ref|YP_003909137.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586449|gb|ADN59846.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 303

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 127/290 (43%), Gaps = 16/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA +G+F+  A+ +  S  +ISR +  LE  +  +L  R  R ++LTE G + +
Sbjct: 7   MRVFSRVAETGNFSAVAKHMDCSAGNISRAVVSLEEHLHTRLLQRTTRSVSLTECGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++  +++    E   + + P G LR+    D+G   L   + E+   +P + I L 
Sbjct: 67  RRCKKILAEIDEADAEASNAHMLPRGTLRVHAVPDIGLKQLTSTIVEYRHAFPAVSIDLK 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186
           L  +  ++  D  D +I     +  S  + R +        AAP YL   R P+ S+ +L
Sbjct: 127 LLPRMANLIEDEVDVSIISAASLPDSRNVSRLIGRCQRILVAAPSYL--ARHPVHSVDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H L+          E   W      P G+  +     VN+  ++    + G+G+  +P
Sbjct: 185 PNHTLMQSRSSFDPPTE---W------PAGDAAQAGHFVVNNMQALRLALLEGAGVGAVP 235

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            Y V+D      LV++       +  V+  YP       K+K F + + +
Sbjct: 236 AYSVQDELKEGKLVQLFAHYPLEATNVFVVYPSRQFVDAKIKTFVDHLIV 285


>gi|78060809|ref|YP_367384.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965359|gb|ABB06740.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 341

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 128/290 (44%), Gaps = 15/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AAE+L ++QS+ISRQI  LE  +G  LF R  + ++LT+ G K  
Sbjct: 54  LTAFEAAARHESFTSAAEELCVTQSAISRQIRLLEETLGCALFVRSHKAVSLTDGGRKFQ 113

Query: 68  RVTSEVYHKLETTQIELQ----ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           R  +     L     EL+     S+V  S  L IA+      + L   L +F   +P+I 
Sbjct: 114 RTVNAALDLLAAAAYELRVQASTSTVTVSADLAIAS------HWLIPRLPKFRAEHPEII 167

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +   ++D     + AD AI+       +    R L+   +     P YL         
Sbjct: 168 IHVDASDEDTRNIREGADLAIQFGDGYWPAC-NARFLLEEEIFPVCTPAYLARLAPMAHT 226

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +  LI         M+   W A  D  + EPR   L +N+Y +++Q  + G GIA+
Sbjct: 227 RDLLRATLIHLETRHWDWMDWATWFAHHDIALTEPRQD-LYINNYPAVLQAAMGGQGIAM 285

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              Y+  D      LVR +E  +      Y  +P     + + + F ++I
Sbjct: 286 GWRYLADDMLATGVLVRPIETSVRTGRGFYLLHPSDTLLSPEARIFCDWI 335


>gi|107026997|ref|YP_624508.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691806|ref|YP_837339.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896371|gb|ABF79535.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649806|gb|ABK10446.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 131/276 (47%), Gaps = 18/276 (6%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L 
Sbjct: 28  ELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLEYARRILDQMDELGELLG 87

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
            +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  IR
Sbjct: 88  SAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCIR 147

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
             +P   + ++ R+L        AAP YL     P +  +L +HN I     I +  E +
Sbjct: 148 FGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGVPGTPHDLTRHNCIG----IRQGDEGY 202

Query: 206 N-WLATVDRPIGEPR-ISCLQVNSYLSI------MQYCVLGSGIALLPDYIVKD---NPN 254
             W  T  R  G  R    +++N  L+       +++ + G GI +  ++ ++D   +  
Sbjct: 203 GVWRLTSGR--GAARHTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDLRDYLADGR 260

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LV ++ D  TPS  +Y  Y +  + + +++AF +F+
Sbjct: 261 LVVVLPDHETPSADIYAVYAQRHQMSTRIRAFVDFL 296


>gi|332560737|ref|ZP_08415055.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332274535|gb|EGJ19851.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 298

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 131/294 (44%), Gaps = 21/294 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+LR F   A++GSFT AA+QL +S    S+ ++ LE  +G++L  R  R + LT  G  
Sbjct: 5   DELRAFVATAKTGSFTAAADQLGVSNRLTSKYVAELEKRLGVRLLQRTTRKVGLTPSGET 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  +L+   +E+   S   +G +R++  +  G++ + G L  F  L P + + 
Sbjct: 65  LLARAPALLDELDDLLVEVSHGSRGFTGTIRVSAPVTFGEDYVGGMLGRFAALNPGLVVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L++   D++ +  D A R+ +  ++ SL  RKL  +     A+P Y+     P   ++
Sbjct: 125 LRLNDSFADLASEGIDVAFRVGRS-ETLSLKTRKLGEVRTVPAASPGYIATRGAPDRPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFN------WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           L +H+          C+ D N      W    D       I    QVNS  +     + G
Sbjct: 184 LVRHD----------CILDTNRRVPRRWTFLEDGTEHSVEIKGRFQVNSARAAADLAMAG 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GI   P + + +   +  LV ++E        V   Y E      K++A  +F
Sbjct: 234 LGICYAPRFALAEALRSGRLVPVLEAFGGAVVPVSAVYLEGRSLPQKVRALIDF 287


>gi|308049776|ref|YP_003913342.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307631966|gb|ADN76268.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 305

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +  + AR GS + AA QL L+ ++ S  +  +E E+G+ LF R  R L LT++G +  
Sbjct: 7   LDILVLTARLGSLSAAARQLDLTPAATSAALKRIENELGVALFVRSTRSLKLTDEGERFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +E    L++     + +  + +G LR++   DLG+  L   L EF   +P + +QL 
Sbjct: 67  SHCAEALALLKSGAEAARSNQSQFAGPLRLSLPSDLGRRTLLPWLDEFQDAHPQLTLQLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQEL 186
             ++  D+    +D ++R  +P + S+L+   L   +     AAP Y+  C +P    EL
Sbjct: 127 FSDRLFDLYQAGSDLSLRYGEP-EDSNLVALPLAPRNRRLLVAAPSYIARCGQPGHPSEL 185

Query: 187 DKHNLITF 194
             HN ++F
Sbjct: 186 ADHNCLSF 193


>gi|269967178|ref|ZP_06181243.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269828168|gb|EEZ82437.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 298

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 131/289 (45%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +++F  +A + + + A ++L LS +  S  I+ LE  +G++L +R  R ++LTE+G  
Sbjct: 4   DHVKLFVRLASTHNISMAGQELGLSPAVASAHINKLEDSLGVRLVHRTTRKVSLTEEGQA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   +E  +  +      P+G LRI  +   G+  +   LK F+  YP + + 
Sbjct: 64  FLPHAEEVLATVEAARGAVGSGQSAPTGVLRITASATFGRLHIVPALKGFMARYPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               +  ID+     D AIR+ + ++ SSL+ RKL        A+P Y++    P   Q+
Sbjct: 124 CRFSDSIIDLVEGGFDVAIRVAE-LKDSSLVARKLAPDRRIIVASPDYIEQFGRPNKPQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  H  I    +        NW       +   R S   + ++  ++    V G GI++ 
Sbjct: 183 LTNHECINLVGM-------NNWSFNTKDGMFNVRTSGRFKTDNGDAMRDATVNGLGISIN 235

Query: 245 PDYIVK---DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNF 289
             + V     +  LV ++ED  +     ++  YP +     K++AF ++
Sbjct: 236 SVWSVYQELQSGQLVEVLEDHPLAMDAGIWAVYPSSRLIAPKVRAFIDY 284


>gi|229590806|ref|YP_002872925.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
 gi|229362672|emb|CAY49582.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
          Length = 308

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 130/290 (44%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  +     F  AA+ L L ++S++  I  LE  +G++L  R  R ++ T  G+
Sbjct: 4   FNAMRVFTRIVELRGFAKAADSLQLPRASVTVLIKQLEAHLGVQLLQRTTRQVSPTLDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++   LE T+         P G L +     +G+ ++   L  F   YP I++
Sbjct: 64  AYYQRCVQLLTDLEETEAVFSTRRQNPRGTLSVDMPSGIGRLIVIPALPAFTARYPQIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L+++ +++  +  DC +R    +   SL+ R L  +     A+P YL     P S+ 
Sbjct: 124 EVGLNDRPVNLIREGVDCVLRGGLAL-DESLVARPLAMMDQLTLASPEYLARRGVPASLD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243
           +L  H ++ +  +     + F     VD  +    +S  L VNS       C  G G+  
Sbjct: 183 DLANHQMVEY--VSSASGKRFGLEFQVDGHLHTVNLSKGLAVNSSDGYFAACEAGFGLIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P Y         +LV ++  V  P+  +   YP   + + +++ F +++
Sbjct: 241 APHYHAMRQLAEGSLVEVLPQVKVPTMALSALYPPHRQLSQRVRVFVDWL 290


>gi|83591801|ref|YP_425553.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83574715|gb|ABC21266.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 297

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 7/281 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF   A  GSF  AAE L +S   +++ +  LE  +G  L  R  R  +LT+ G   +  
Sbjct: 9   VFIKAADLGSFAAAAEALAMSPQMVAKHVVFLEDRLGTALLNRTTRRQSLTDVGRAYYDR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  + E  +    +   +P G LR+   +  G   L   +  +L  YP++++ L L+
Sbjct: 69  CKLVLSEAEAAEALAHDMRSRPQGVLRVNAPMTFGAFTLAPFVTRYLTRYPEMRVDLTLN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D   D  +  +R+ + I  ++LI   L    + A AAP YL     P    +L  H
Sbjct: 129 DRFVDPLEDGVEVMVRIGE-IADTALIAHPLAPYRLIACAAPSYLAARGTPKEPADLQGH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
           + + +    P       W+ T +    E R +   +   + +++     G GI L P+ +
Sbjct: 188 DCLVYAYWSPSI--PCPWVFTREGQSHEVRANGRFRSTDWKALLHAATAGFGITLGPESV 245

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + D      LVR++ D   P+  ++  YP   + T KL++F
Sbjct: 246 LADEVAAGRLVRVLPDYQGPARPMHVLYPAGRRPTVKLRSF 286


>gi|296390427|ref|ZP_06879902.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 180

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 5/177 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + ++ F  V   GS + AAE++ LS+S IS+++S LE  +G++L YR  R +  T
Sbjct: 1   MSLRLEDIQAFLNVVELGSISAAAERMSLSKSVISKRVSDLERHLGVRLLYRSTRNVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           E G   ++        L      + L+E+ +   G+LR+   +  G   L   + EF+  
Sbjct: 61  EAGGFFYKSAKASLQDLNNAAESVALRENDL--CGELRVMAPMSFGTLWLGPLVMEFMAR 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
            P +++ L LD++ +D   +  D AIR+ + +Q SSLI R+L T       +P YL+
Sbjct: 119 NPRLEVVLQLDDRIVDFEKEGYDLAIRITR-LQDSSLIARQLGTSRRVVCCSPEYLE 174


>gi|254511322|ref|ZP_05123389.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221535033|gb|EEE38021.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 298

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 10/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA + SF   A ++ LS  S +R ++ LET +G +LF R  R + L E G    
Sbjct: 7   LEVFIAVAETESFAEGARRMGLSAPSATRGVNALETRLGTRLFDRTTRRVRLNEVGKMYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+        ++  P G+LR+  + + G+  +   L EFL  +PD+   ++
Sbjct: 67  EDARLIVAQLQAADDAAAGATTNPVGELRLTCSNEFGRIYVTPILTEFLDTFPDVSADVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  +  D A+R+   + SS L   ++ ++      AP YL+    P +  +L 
Sbjct: 127 MVDRVVNLIEEGFDVAVRI-GSLPSSGLTAVRVGSVRRVVCGAPAYLERFGRPETPADLT 185

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H ++    + P     F    + + R   +PR   L+VNS  +     + G G+  +  
Sbjct: 186 GHQIVAAAPVSPTTEWRFGRDQSNIVRL--KPR---LRVNSIAAARAAVIQGWGLTRVLS 240

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           Y V     +  L  I+E        ++  + E  +   K++AF +F   + RD +
Sbjct: 241 YQVGPELQDGRLQSILEGFEPEPLPIHLVFVEGRRAPAKVRAFVDFAKERLRDIR 295


>gi|89095008|ref|ZP_01167937.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
 gi|89080716|gb|EAR59959.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
          Length = 304

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 134/277 (48%), Gaps = 23/277 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VAR GSFT A+++L LS+S+IS+QI  LE E+ ++L  R+ RG+ LT+ G  L 
Sbjct: 14  LLIFAEVARQGSFTGASKKLGLSKSAISQQIKRLEAELDLQLLARNTRGVVLTQVGETLL 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +  +L     ++Q+   +PSG  RI+      +N++   L +  L YP I+ +L+
Sbjct: 74  ARSELLSEQLANAVNDIQKVKDQPSGTFRISLPPFFERNIIVPALHQLCLEYPLIKPELV 133

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  +  D+     D AI     ++ S+   + +  +     A  +YL+    P S+ +L 
Sbjct: 134 VTGRWQDLIEHQLDAAI-FGGTLKDSNYKAQSIGKVRDLFCATANYLQRNSTPESLDDLT 192

Query: 188 KHNLITFGDLIPKCMEDFNW----LATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGS 239
           +H  +             +W    L  +D+      +  L+     N+  ++++  +   
Sbjct: 193 EHKYLA-----------SHWQNHKLTLIDQRNSTDLLFSLEHYALTNNLTTLVEMTLSDM 241

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCY 273
           GIALLP+++ +   N   LV ++ D     +  YF +
Sbjct: 242 GIALLPEFVCQQEINRGDLVHLLPDYHGRPWHFYFLH 278


>gi|115360779|ref|YP_777916.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286107|gb|ABI91582.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 330

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 124/288 (43%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 47  LLVFEAAARHESYTRAADELSLSQSAISRQVQTLEDQLGVSLFRREGRSVKLTEVGRRYF 106

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 107 VELSGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 165

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-PLSIQEL 186
                ID   D  D AI +        L   +L    + A A+P      +  P +    
Sbjct: 166 SRIGGIDFHTDDLDAAITVGSG-DWPGLHAHRLYNEFLIAIASPDAAGRRKAGPRAPAWA 224

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
               L+          E F+      R   E RI    ++ S+L  +Q    G GI L+P
Sbjct: 225 VGQTLLGVTSNQHAWAEWFSHFGLDHR---EMRIGPSFELTSHL--IQAVRAGMGIGLVP 279

Query: 246 DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V+D  + N +  + D IT   + Y  YP        L AFR ++ 
Sbjct: 280 KVLVEDELSRNELVSIGDAITSQRSYYLVYPPENDTLPSLVAFREWLL 327


>gi|331015535|gb|EGH95591.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 338

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 137/302 (45%), Gaps = 19/302 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTEQ 62
           + LR F   AR  SF+ AA +L+++ +++ +Q+  LE+ +GI LF R + G   L LT+ 
Sbjct: 36  NALRAFEAAARHQSFSAAAAELNVTPAAVGQQVRNLESWLGIALFARASSGTARLMLTDV 95

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                    E + +L      L++SSV     L +  +       L   +++F   YPD+
Sbjct: 96  ARTALPDIREGFDRLSIGLTRLKDSSVH--AGLTVTVSPAFASKWLLPRIEQFQQDYPDM 153

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L  + + +D  ++  D  +R     +   L    L+   M    AP Y +  +  L+
Sbjct: 154 NVLLDTNARSVDFQVERVDVGVRYGAG-KWPGLTAVHLMDEVMFPVCAPDYARLKKGKLT 212

Query: 183 IQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
            + L+   LI   DL      D+  W   +D   G   ++    L++N+  S++Q  + G
Sbjct: 213 AKALEGSTLIH--DLSMANDRDYPTWRMWLDAS-GFNHVNASHGLRINNSASVLQAAIDG 269

Query: 239 SGIALLPDYIVKDN---PNLVRIMED--VITPSFTVYF-CYPEALKNTGKLKAFRNFIFL 292
            G+AL    +VKD+     LVR   D  V  P    Y+  Y        K+KAFRN++  
Sbjct: 270 QGLALARSVMVKDDLAAGRLVRPFADKGVDCPLTQAYYIVYRPECAELAKVKAFRNWLLF 329

Query: 293 KA 294
           +A
Sbjct: 330 EA 331


>gi|157377053|ref|YP_001475653.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319427|gb|ABV38525.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 298

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 128/294 (43%), Gaps = 20/294 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  +  +G F+  A+ L++  +++SR++  LE  +  +L  R  R L LTE+G  L + 
Sbjct: 14  LFVHLVNTGGFSQVAKALNMPIATVSRKVHKLEESLDTQLIMRSTRKLRLTEEGEALFKR 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +   + +     +     KP G LRIA  + +   +  G L EF  ++PDIQ+ +  +
Sbjct: 74  YQDAISQFDNCSDSVIN---KPEGTLRIAAPVSIISMIFIGALNEFSKMHPDIQLHIAQN 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N  ID+  +  D AI +      SS +   L  ++   YA+P YL    E     +L +H
Sbjct: 131 NNAIDLVEEGVDIAI-VGGAQPDSSWVSNSLGVLNYGLYASPSYLTQAAEIDHPNQLKQH 189

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLP 245
            LI       K    FNW  T+    GE       + L +      +   V   GI   P
Sbjct: 190 ALI-------KVWPLFNW--TLKHRSGEDFYYDGPAKLTLGDLYGAVHAAVDDGGILYGP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  VK    +  LV ++ +       +   Y +  +   K+K F  F+  KA++
Sbjct: 241 ELFVKQQVKSGQLVEVLPEWTGEQRRISMLYHQRSQQPLKVKLFIEFMQSKAQE 294


>gi|66043955|ref|YP_233796.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63254662|gb|AAY35758.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|330971979|gb|EGH72045.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 315

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 9/271 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLGVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHVRMGCTEGFGSFFITPQLSHFLDSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N     
Sbjct: 131 ISLDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLGLYATQAYLDNHSPIE 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I++ D +    E       +     + R + + +  Y + +Q    G  +
Sbjct: 190 HKADLSEHVFISYVDDLAFSSELLYMSNLLPNAQAQLRSTSV-IAQYTAALQ----GRAL 244

Query: 242 ALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
           A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 245 AILPCFLAAQDPRLLPVLREEVNITRQFWMY 275


>gi|291617440|ref|YP_003520182.1| YagP [Pantoea ananatis LMG 20103]
 gi|291152470|gb|ADD77054.1| YagP [Pantoea ananatis LMG 20103]
          Length = 299

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 138/312 (44%), Gaps = 31/312 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L VF  VA  G+F+ AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPVFIAVAEEGNFSKAAARLGVTRSAVSQGIRRLEDTFGTMLVMRTTRAVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLY 119
           E G +LH+  S     +     E+    V P G LRIA T  + +  L G L   F    
Sbjct: 61  EAGERLHKSLSLPLTGINAAFEEIVSDPV-PRGLLRIAVT-SIAEEFLSGPLIASFAAAN 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHY 173
           P + + +++ +++ DI     D  +RL + I+   +       QR++V       A+P Y
Sbjct: 119 PAVTLDIVVTDEEFDIVAAGYDAGVRLGEVIEKDMIAVPLTGEQREMVV------ASPSY 172

Query: 174 LKNCREPLSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
                 P+  ++L  H  I +     IP     F    +      EP+I+    N    +
Sbjct: 173 FTANGLPVHPRDLVHHQCIGWRQSPDIPPYRWPFEENGSAFDLAIEPQITT---NDLRLM 229

Query: 232 MQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAF 286
           ++  + G GI L      +   ++  LV +++D +   P F +YF  P+      KL+A 
Sbjct: 230 LRLALTGGGITLATQETFRPYIESGELVSVLDDFLPKFPGFYLYF--PQRRNMAPKLRAL 287

Query: 287 RNFIFLKARDWK 298
            + +    R W+
Sbjct: 288 IDHV----RKWR 295


>gi|330008798|ref|ZP_08306301.1| transcriptional regulator, LysR family [Klebsiella sp. MS 92-3]
 gi|328535059|gb|EGF61580.1| transcriptional regulator, LysR family [Klebsiella sp. MS 92-3]
          Length = 212

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 4/187 (2%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR    F  V   GSFT AA +L LS   + + I+ LE+++  +L  R+ R  +LT+ 
Sbjct: 2   DKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         V  ++   +  ++   + P+G LR++     G +++      FL  +P +
Sbjct: 62  GRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPAV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D+  +  D AIR+ + I    L+ R L    M   AAP YL     P +
Sbjct: 122 RVELDLTNRMVDLVDEGFDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPGT 180

Query: 183 IQELDKH 189
            ++L  H
Sbjct: 181 PEDLADH 187


>gi|323499613|ref|ZP_08104582.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323315353|gb|EGA68395.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 307

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 11/240 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  + R+ S   A  ++ LS ++++ ++  LE+  GIKL  R  R L+LT+ G   H
Sbjct: 7   MALFASIVRNQSLAGAGREMGLSPATVTARLQALESRYGIKLLQRTTRHLSLTDSGHLYH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   ++ T+  LQ  S +  G L+I+   D+G+  +   + +F   YPD+   L 
Sbjct: 67  QACLEILASVQETENLLQTGSKEVRGNLKISAPRDIGKQYIAPLINDFAHKYPDVTPYLY 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   +++    D  IR  + +  SSLI RKL +      A P YL+    P    +L 
Sbjct: 127 LGDNLTNLAESGLDIVIRYGE-LADSSLISRKLASSRRVLCATPEYLRRKGTPTCPSDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGIAL 243
            H+ +    +I    E  NW    D    +  I  +    Y      I Q+ + G+GIAL
Sbjct: 186 NHDCLA---MIRSNEELKNWHFEDD---AQHNIVTVVPTRYSDDGEVIRQWALCGAGIAL 239


>gi|260556672|ref|ZP_05828890.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260409931|gb|EEX03231.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 309

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 124/273 (45%), Gaps = 11/273 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE 
Sbjct: 3   DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMDVILLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+    E  +I + E      G LRIATT DL    +   L  ++  +  +
Sbjct: 63  GQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHIIPALSHWMSAHRGL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPI--QSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + ++ ID+  +  D A+R+      +S S+I    V   +   A+P YL      
Sbjct: 123 SVHFEVGHRYIDLIEERIDIAVRMSSTAVEESDSVIPMAFVDQIL--VASPSYLNQTSPI 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L   +L+ H L++   +      +F    T ++ +     S LQ N+       C  G G
Sbjct: 181 LHPNDLNNHELLSINAMNDSRSFNFQHAKTGEK-LNIEMTSRLQSNNLQVAKALCQQGHG 239

Query: 241 IA---LLPDYIVKDNPNLVRIMEDVITPSFTVY 270
           IA    L       N +L+ I+ D   P+FT+Y
Sbjct: 240 IARILYLDAQKELKNGSLIEILPDWKLPAFTLY 272


>gi|150377388|ref|YP_001313983.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150031935|gb|ABR64050.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 314

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 126/292 (43%), Gaps = 23/292 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA + S + A+    L +S++S +I  LE + G++LF R    L LT+ GS+L R  
Sbjct: 9   FVKVADARSISAASRLHRLPKSTLSHRIRQLEDQFGVELFVREGHQLHLTDAGSELLRHA 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            ++    +     + E   + +G LR+ +T + G  +    L  F + YP + + ++  +
Sbjct: 69  RKIRTSCDDAATAMAEMHKEVAGTLRVGSTGEFGTTVTSELLYAFQMKYPQVILDVVFLS 128

Query: 131 KD---IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+S    D      +P      + R+L T     YA+P YL    +P S  EL 
Sbjct: 129 ARQPFTDVSDMALDGIFHWGEP-SDVDYVSRRLATASYGLYASPDYLAQHDQPASEAELA 187

Query: 188 KHNLITFGD---LIPKCMEDFNWLATVDRPIG-EPRI---SCLQVNSYLSIMQYCVLGSG 240
           +H  + F     L P       W   + RP G E  I   + L  N Y ++  + V G G
Sbjct: 188 RHRGLIFRSTTRLQP-------WY--LSRPGGPETEILLTAALTANDYWTLKYFAVAGQG 238

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IA LP + V+       LV ++ +  +    +   Y      + + KAF  F
Sbjct: 239 IAYLPGFFVETECQSGLLVPVLAEWRSRETAINLIYSRRRHVSRRFKAFVGF 290


>gi|330960879|gb|EGH61139.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 301

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 136/301 (45%), Gaps = 33/301 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++TE G +
Sbjct: 7   DDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNLGVVLLHRSTRQVSITEDGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   ++    E+     +PSG LR+ ++   G+  +   L E    YP + I+
Sbjct: 67  IYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAARYPKLDIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  IR+   I +  L  R L        A+P YL+    P++  E
Sbjct: 127 LDIQDRLVDLIEEGVDLDIRVGNQI-APHLRARHLARNWRVLCASPAYLQRQGTPVNPGE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG-----EPR-ISCLQVNSYLSI------MQ 233
           L  H+ +   +               DRP G      P+    ++V   LS        Q
Sbjct: 186 LANHDCLVIKER--------------DRPFGIWHLHGPQGAETVKVTGSLSTNHGEIARQ 231

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
           +C+ G G+ L   + V+ +    R+++  + P +     ++  +   L ++ K++    F
Sbjct: 232 WCLDGRGLLLRSLWDVRTDLAEGRLIQ--VLPKYWQDADIWAVHTSPLMSSAKMRVTVEF 289

Query: 290 I 290
           +
Sbjct: 290 L 290


>gi|329115688|ref|ZP_08244410.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum
           DM001]
 gi|326695116|gb|EGE46835.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum
           DM001]
          Length = 316

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 133/300 (44%), Gaps = 16/300 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V + G F+ AA    L +S +SR+I  LE  +   L  R +R  ++TE G
Sbjct: 10  DLNDFGYFVQVVKYGGFSAAARATGLQKSLLSRRIRLLEERLHTHLIQRSSRHFSVTETG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +  K +T +  +     +P G +R++  + L        L  F++LYP + 
Sbjct: 70  HRFYEHCIAMLEKADTAERSVARLQTEPCGLVRLSCPVALLNFQFGALLARFIMLYPAVT 129

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAA----PHYLKNCR 178
           +QL   N+ +D+  +  D AIR+R  PI SS L+ R L T      AA    PH L +  
Sbjct: 130 LQLESTNRRVDVLKEGMDLAIRVRFPPIASSDLVMRTLDTSTQCLIAAPTLVPHPLSSPA 189

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +  +   LD H   T G             AT+     EPR   L  +    + +  ++G
Sbjct: 190 DLNAFPSLDFHT--TPGSHSWLLENQAGQTATI---FHEPR---LATDDMAVLREAALVG 241

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +GI  +P  +V    +  +L+R++ D    +  ++  +P        ++A  +F+  + R
Sbjct: 242 AGIVQMPTMMVWQDIETGHLIRVLPDWHPQAGIIHAVFPSRRGLVPAVRALLDFLAKECR 301


>gi|264677321|ref|YP_003277227.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|299533859|ref|ZP_07047226.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|262207833|gb|ACY31931.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
 gi|298718143|gb|EFI59133.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 309

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F      GS   AA QL +S ++ S+ I+ LE E+G +L  R  R + LTE G    
Sbjct: 7   IETFVKALEGGSIASAARQLGISPAAASQNIARLERELGTRLITRTTRSMALTEAGESYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + V  +LE  Q +L     +  G+LRIA     G+++L   L  F  L+P ++++L+
Sbjct: 67  ARVAPVLDELEKAQSDLSLIHGELQGRLRIACMAAFGRHVLAPLLPAFAALHPRLELELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D ++R R  ++    + R L ++     A+P YL+    P S Q+L 
Sbjct: 127 ITDRHVDVLKEDVDISVRYRDVLEPGMSV-RLLASVPRILCASPQYLQQHGRPQSAQDLL 185

Query: 188 KHNLITF 194
           +H  + +
Sbjct: 186 EHPCLLY 192


>gi|121608949|ref|YP_996756.1| LysR family transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121553589|gb|ABM57738.1| transcriptional regulator, LysR family [Verminephrobacter eiseniae
           EF01-2]
          Length = 304

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 127/295 (43%), Gaps = 12/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +   AA++L+++ S++S Q+  LE  +G++LF R+   L LT  G  
Sbjct: 18  NALRAFDATARHLTVAKAADELNVTPSAVSHQLRALENALGVQLFRRNKTRLKLTSHGET 77

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       +  +     +L + ++   G L ++  + L   +L  ++ EFL   PD+Q +
Sbjct: 78  LLPSVRSAFQMIANAAAKLGDPAM--VGNLVVSAPVGLSSRVLTRHIGEFLSACPDVQFR 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI  N+D ++     D  +R    I     + R L  + +     P  +       S+ E
Sbjct: 136 LIASNEDKEVYSPAVDLCLRYGTGIWPDRQV-RLLTHVELFPVCNPAMINGQPGLRSVDE 194

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+   +      E   WL     P+   R++ +  N++++ M+  V G G AL  
Sbjct: 195 LRNHQLLCEDN----GTEWTRWLLDAGMPVAGFRMAEMG-NAHIA-MEAAVHGQGAALGD 248

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +V D+     LVR+ E  +      Y      +     + AF  ++    R +
Sbjct: 249 SLLVGDDLAEGRLVRLFERSVPAKHAYYMVCRHEMSANPLVAAFTEWLLTWVRSY 303


>gi|288961211|ref|YP_003451550.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288913519|dbj|BAI75006.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 354

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 130/285 (45%), Gaps = 12/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +  SGS + AA  L  +Q ++SR++  LE  +G++L  R    ++LTE G++ +
Sbjct: 58  LETFVRIVESGSLSAAAALLGSTQPTVSRRLQLLERMLGVRLLQRSTHRMSLTEDGTRCY 117

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +  + +++ +  +PSG LR+      GQ  L G + ++L  YP + ++ +
Sbjct: 118 ERAKDLLAGWQILESDVRGADDQPSGHLRVVAPHAFGQQQLIGPVVDYLRRYPGMTVEWL 177

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQ 184
           L ++  D   +  DCAIR+ + +   S++  ++  +   A A+P  L      R P  + 
Sbjct: 178 LHDRMPDFIAEGIDCAIRVGE-VADPSVVALRVAEVPRIAVASPLMLDGRPPPRHPDELA 236

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL    L TF     + M               PR+S    +   +I    +LG G A+ 
Sbjct: 237 ELPWLALRTF--YRDEVMLTHATTGETASFAIRPRLST---DGLQAIRNAALLGLGAAIG 291

Query: 245 PDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             + +V+D     LV +  D    +  V+  YP A     +L+ F
Sbjct: 292 SQWALVEDLAAGRLVHLAPDWRAAALPVHLVYPPARHQPARLRRF 336


>gi|269964002|ref|ZP_06178308.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831221|gb|EEZ85374.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 310

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 128/296 (43%), Gaps = 27/296 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-- 65
           L +F  V    SF  AA QL++  +++SR+I  LE E+G KL  R  R L+LTE G +  
Sbjct: 14  LPLFARVIELNSFAEAARQLNVPTTTVSRKIQQLEAELGGKLINRSTRSLSLTELGQQVL 73

Query: 66  -----LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
                +    SE+YH       E ++++ KP G L I     L QNLL     EF   YP
Sbjct: 74  PKAQLIADTVSELYH-------EAEDAASKPIGTLNITAPRALSQNLLASLFAEFQARYP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L   N+  D++    D A RL  P+  SSL+   L  +  +  A  + L N    
Sbjct: 127 TIKVNLASSNRYQDMTKQSLDFAFRL-GPLSDSSLVAISLSPVK-YVLAISNALAN---- 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--NW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            ++ + +    +     I   +E +   W  +  D  +       +  + +    Q C+ 
Sbjct: 181 -ALPKFEHPRQLNAAPCIRNHVEGYFLPWRFSLKDEVVEVTEAGSVTTDDFFVSKQLCLD 239

Query: 238 GSGIALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+G+  LP    Y       L  I++D +    T+   Y +      K + F +FI
Sbjct: 240 GAGVCYLPKSMLYQELQTQQLTVILDDWVPQDKTMLLVYQDRKHLPQKSQLFIDFI 295


>gi|218676085|ref|YP_002394904.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
 gi|218324353|emb|CAV25712.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 298

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 126/286 (44%), Gaps = 29/286 (10%)

Query: 3   FDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++++ LE  +G +L  R  R ++ TE
Sbjct: 1   MDWILNVKSYVKVVEEGSFNGAARKLNTTSSAISKRVNWLEERIGTQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    +     ++   E +  +  P+G L+I  TI +G   L   + +FL  YPD
Sbjct: 61  AGALFYLRAKDQLDNWQSIIDETRSVNQTPAGLLKIGATIAVGSKFLVQYMDDFLEKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++QLI         +       R  + + S S  +  L       YAAP YL     P+
Sbjct: 121 IKVQLITTTPGQLPELGLDLVISRELEQLNSLSFKKTPLFEHKASFYAAPSYLAKHGYPI 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVL- 237
           + Q+L++HN + +G                +RP  E  ++  Q   +N   +      L 
Sbjct: 181 NEQDLEQHNSLIWG----------------ERPTREVTLTKGQRITLNGNFATTNPEALF 224

Query: 238 -----GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
                G G+ L    ++K++     LV ++ ++      VY  YP+
Sbjct: 225 HAAKRGMGVLLTIKAMIKEDLKQGTLVPVLPNITADEVMVYAYYPK 270


>gi|15596325|ref|NP_249819.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116049060|ref|YP_792138.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892906|ref|YP_002441775.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254239499|ref|ZP_04932821.1| hypothetical protein PA2G_00112 [Pseudomonas aeruginosa 2192]
 gi|296390504|ref|ZP_06879979.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313106097|ref|ZP_07792354.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9947048|gb|AAG04517.1|AE004543_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115584281|gb|ABJ10296.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126192877|gb|EAZ56940.1| hypothetical protein PA2G_00112 [Pseudomonas aeruginosa 2192]
 gi|218773134|emb|CAW28946.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310878856|gb|EFQ37450.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 303

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  + R  SF H+A++L +S S++S  +  LE  +G+KL  R +R +  T+ GS L 
Sbjct: 12  LNVFMTIVRRRSFRHSAQELGVSTSALSHSMRNLEARLGVKLLNRTSRSVVPTDAGSALA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               + +  +     EL      P G+LR+    D  + LL   L+ F   YPD+Q++L 
Sbjct: 72  AKLEDGFQVIGEALGELDAYRTSPVGRLRLNVPRDASRLLLGPVLRRFTEAYPDLQLELS 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +DI  D  D  IR    +    +       +     A+P YL     P    +L 
Sbjct: 132 VEDRMVDIVADGYDAGIRYGGTVPQDMVAVPLTGELRWVVAASPDYLARHGVPQRPDDLL 191

Query: 188 KHNLI 192
           +H  I
Sbjct: 192 RHACI 196


>gi|207722116|ref|YP_002252554.1| hypothetical protein RSMK02449 [Ralstonia solanacearum MolK2]
 gi|206587290|emb|CAQ17874.1| hypothetical protein RSMK02449 [Ralstonia solanacearum MolK2]
          Length = 281

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 122/272 (44%), Gaps = 20/272 (7%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
           R GS + AA  L L+Q +  R +  LE  +G  LF R  +GL+ TE    L R  +E   
Sbjct: 2   REGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAALAL-RPYAE--- 57

Query: 76  KLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK 131
            LE+T   L  ++        G +RI  +  +   +L   L +    YP + ++L+  N+
Sbjct: 58  SLESTSAALLRAASSQGEGVRGTVRITASEVVTGEVLPAILADLHAGYPGLTLELVPSNR 117

Query: 132 DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL 191
             D+    AD A+R+++P Q   LI R +  I +  +A   YL+    P ++ +L  H L
Sbjct: 118 LEDLLRRDADIAVRMQRPSQ-GVLIARHIGGIELGVHAHRRYLERRGMPATLDDLAGHAL 176

Query: 192 ITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           I +      I        W+   DR         L+ +S L+ +     G GI +    +
Sbjct: 177 IGYDRETAFIRGMKGQVPWMRR-DR-------FALRTDSDLAGLAALRAGFGIGICQVGL 228

Query: 249 VKDNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
            + +P+LVR+  D + P    +    E L+++
Sbjct: 229 ARRDPDLVRLFADEVAPVLDTWLAMHEDLRDS 260


>gi|197105393|ref|YP_002130770.1| transcriptional regulator, LysR family [Phenylobacterium zucineum
           HLK1]
 gi|196478813|gb|ACG78341.1| transcriptional regulator, LysR family [Phenylobacterium zucineum
           HLK1]
          Length = 314

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 131/304 (43%), Gaps = 45/304 (14%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF   AR GSFT AA +L ++Q+++S Q+  LE  +G +LF R  R + LT  G +L 
Sbjct: 13  IRVFEAAARLGSFTRAASELGMTQAAVSWQVKALEQRLGQRLFVRRPREVGLTPAGERLA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S+    L +   ++ E+     G L I T        L G L  F L +P I ++L 
Sbjct: 73  RAASDAMAALRSALSDISETG---EGMLGITTLQTFATQWLAGRLGRFQLAHPKIAVRLD 129

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +N+ +D+  +  D AIR  +   P   S L+   + T+ +   AA   L +   P ++ 
Sbjct: 130 TENRVVDLMREDFDVAIRGGRGDWPGMESLLLFPAVQTV-LCTPAAAARLGDPPRPEAL- 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGE-----PRI----SCLQVNSYLSIMQY 234
             D H        I    E   W A     P GE     PR+      L+V +       
Sbjct: 188 -FDVHR-------IGSDAEWRQWFAAAGVMPEGETGPAAPRLMGDTQTLEVAAA-IADDG 238

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-------CYPEALKNTGKLKAFR 287
             +GS     P    +D      + E  +   F VYF        YP   +  GK+ AFR
Sbjct: 239 AAMGS-----PVMFGRD------LAEGRLVQPFDVYFGDSSYWLVYPRDRRRAGKIAAFR 287

Query: 288 NFIF 291
           +++F
Sbjct: 288 DWLF 291


>gi|254719152|ref|ZP_05180963.1| LysR family transcriptional regulator [Brucella sp. 83/13]
 gi|265984147|ref|ZP_06096882.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306838144|ref|ZP_07471000.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|264662739|gb|EEZ33000.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306406734|gb|EFM62957.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 310

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 128/300 (42%), Gaps = 24/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VAR  SF+ AA++L L+Q ++SRQI+ LE ++G  LF R +R + L+E G  
Sbjct: 13  SALAAFDAVARHESFSAAADELSLTQGAVSRQIASLEEQLGAALFDRTSRNVVLSEAGRV 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        +      LQ  S      L +A     G   L   +  F+  YP I + 
Sbjct: 73  YLQAIGPALASIRAA--SLQVMSQMRGTTLNLAFLPTFGTRWLIPRIPRFVAQYPHIILN 130

Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKN--CRE 179
                   D   +  D AI + +P     + + L+   +  +      +P +LK+     
Sbjct: 131 FATRIGQFDFDREGLDAAIHIGQPDWPNAECTFLMDETVAPV-----CSPAFLKDHPVTS 185

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  +  L   N+ +     P   E  +W  ++   I  P    ++   + ++ Q CV G 
Sbjct: 186 PHDLLRLPLFNMAS----RPGAWE--HWFRSLG--ITTPVPGGMRFEQFSNVSQACVAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L+P ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 238 GMGLMPLFLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEVRN 297


>gi|254505373|ref|ZP_05117520.1| transcription regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219551490|gb|EED28468.1| transcription regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 295

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 130/273 (47%), Gaps = 23/273 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW+  R F VVA  GSF+ A   L++SQ ++ RQI+  E E+ + LF R  + L LT
Sbjct: 6   IQFDWNHARAFLVVAEEGSFSAAGRALNMSQPTLGRQIAAFEHELKLTLFERVGKKLVLT 65

Query: 61  EQGSKLHRVTS---EVYHKLETTQIELQESSVKPSGKLRIA-TTIDLGQNL--LQGNLKE 114
           + G KL++  S   E  ++L  T +   ES    +GK+ I+ T +D       L   L E
Sbjct: 66  DSGQKLYQHVSHMAESANQLLLTALGQDESI---AGKVSISLTELDAFFRFPPLVSQLNE 122

Query: 115 FLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
              L P+I I+LI+ N+  D+    AD A+R ++P     LI +K+    ++ Y     L
Sbjct: 123 ---LAPNIDIELIVSNQVSDLKRREADIALRYQRPT-DLDLIAKKIGRETVYLYGRKE-L 177

Query: 175 KNCREPLSIQELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
            N  E  S  E+    +I F   D + + ++  NW      P        L  N+ L   
Sbjct: 178 VNSFEGKSPNEVANVQIIGFDYTDHLTQHLKHSNW-QLKHNPF------TLVCNNQLVQW 230

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITP 265
           Q       + LLP++I + +P+L    ++   P
Sbjct: 231 QLAQHTRTLILLPEHIARAHPDLRIAFKEHFNP 263


>gi|302187856|ref|ZP_07264529.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 315

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 9/271 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLGVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHVRMGCTEGFGSFFITPQLSHFLDSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N     
Sbjct: 131 ISLDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQAYLDNHPPIE 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I++ D +    E       +     + R + + +  Y + +Q    G  +
Sbjct: 190 HKADLSEHVFISYVDDLAFSSELLYMSNLLPNAQAQLRSTSV-IAQYTAALQ----GRAL 244

Query: 242 ALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
           A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 245 AILPCFLAAQDPRLLPVLTEEVNITRQFWMY 275


>gi|254559415|ref|YP_003066510.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254266693|emb|CAX22474.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
          Length = 298

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 136/290 (46%), Gaps = 16/290 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  VA +GSF  AA+   +S + + + I  LE  +G++L  R  R  +LT+ G   
Sbjct: 6   SMEVFATVADTGSFAAAADAAGISAAMVGKHIRQLEEHLGVRLLNRTTRRQSLTDAGRDF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              T  V  +LE  +    +S  +P G+LRI      G + L   L  ++   P++ ++L
Sbjct: 66  LERTRIVLAELEAAEALAADSRARPRGELRINAPFSFGVHSLSPLLPIYMAENPEVSVRL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  DC  R    +  S+LI R L  + + A A+P YL +  +P    +L
Sbjct: 126 TLSDRVVDLVDEGYDCVFRA-GVLHDSALIARGLRPLRLIACASPTYLAHHTQPKCPDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIAL 243
            +H  + F       +E+  W    D   GE   P +S    NS  ++ Q  + G GI L
Sbjct: 185 ARHTCLGFAG---SALEE-RWTFYGDG--GETIVPIVSRFSTNSGEALRQAALAGLGIVL 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
             + ++ D+    R++   I P +     ++  Y    + T KL++F +F
Sbjct: 239 HAEELLADDVATGRLVH--ILPEWRSERPLHVLYSPDRRITPKLRSFLDF 286


>gi|238023779|ref|YP_002908011.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878444|gb|ACR30776.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 330

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 122/276 (44%), Gaps = 14/276 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +  SGS + AA  L  +Q ++SR++  LE  +G++L +R    + LT  G +  
Sbjct: 32  METFVRIVESGSLSAAAVLLRTTQPTVSRRLQALERSLGVRLLHRSTHTMRLTVDGERAF 91

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++     + + +L+ +  +P G LR+      GQ +    L  FL  +P + ++ +
Sbjct: 92  KRAKDLLASWASFEADLRGAQQEPEGPLRVTVPHAFGQEIFVEPLLRFLREHPRVTVEWL 151

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D   +  DCAI++ +P    +++  KL ++     AAP  L     P S +EL 
Sbjct: 152 LQDEVHDFIGNGIDCAIQIGRPTD-PAVVAIKLASVSRIVVAAPSLLGGGPLPASPEELA 210

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243
               ++            N +A   R  GE R   +Q     ++  ++    + G G+ +
Sbjct: 211 TLAWLSLRTYY------RNEVALTHRGTGETRRFTIQPRMSTDNLFAMRSAMLHGMGVGI 264

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
              +++ D+     LVR+  +        Y  YP A
Sbjct: 265 SSAWLLADDLAAGRLVRLAPEWQAAPLPAYLTYPHA 300


>gi|170734765|ref|YP_001773879.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820803|gb|ACA95384.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 301

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 128/281 (45%), Gaps = 17/281 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR GSF  AA      ++++SR+++ LE  + ++LF R +RG+ LT++G  L+  T
Sbjct: 9   FNLVARHGSFGEAARVADRPKATLSRRVAELENSLSLRLFERGSRGVKLTQEGRALYERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  +   +   S +P G+LRI+  +   Q  +   +  F L YP +++++  ++
Sbjct: 69  GALLAELADSASAIAAGSERPRGRLRISAPMLFSQFAMGRLVATFALRYPAVRLEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  IR+  P    SLI R ++   +   A P   +              +
Sbjct: 129 RPVDMIEEGYDLVIRV-NPDPDESLIGRVILRDRLVVVAKPGLARPG-----------GD 176

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN--SYLSIMQYCV-LGSGIALLPDY 247
             T    + +   D      V  P G  RI    V   S LS+++  V LG G A LP  
Sbjct: 177 APTPAPAVVRGANDTRTGWEVTGPDGTARIPVEPVARLSSLSMVRDTVRLGLGAACLPIS 236

Query: 248 IVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286
           +V  +     ++   DV      ++  YP     + ++ AF
Sbjct: 237 LVSRDLAAGTLVSWGDVPGSDIALWALYPSRRLLSARVSAF 277


>gi|114769922|ref|ZP_01447532.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114549627|gb|EAU52509.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
          Length = 295

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 11/235 (4%)

Query: 23  AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82
           AA    +S +  S +IS LET +G++LF R  R L+ TEQG   +R    +   ++  + 
Sbjct: 4   AARDQRISPAVASARISQLETHLGVRLFQRTTRSLSPTEQGQIFYRGARVILESVQMAEA 63

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
           ++ + +  P G L +A  + +G++L+  N   F   YP + ++L L ++ +D++ +  D 
Sbjct: 64  DIGDVTENPRGVLHVAAPLGVGRSLIAPNSPAFTSKYPLVDLRLRLSDRKVDLTAEGLDI 123

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD--KHNLITFGDLIPK 200
           A  L  P  S+  I RK+        A+P Y+     P+   EL   KHN +      P 
Sbjct: 124 AFFLGHPTDSNLRI-RKIADCPRVLCASPEYIAKNGHPVDGFELQRGKHNCLML--RFPG 180

Query: 201 CMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252
             E F W   ++ P G  +      L+ +    +  + + G+GIA+ P + V D+
Sbjct: 181 STE-FQW--ELNTPDGLRKFDVKGRLESDDGDVLTDWALAGAGIAMKPVFEVYDH 232


>gi|296162751|ref|ZP_06845535.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887000|gb|EFG66834.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 306

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 134/292 (45%), Gaps = 13/292 (4%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           VA +G F+ AA+++ ++ SS++R +  LE  +G  L  R  R ++LT+ G       ++V
Sbjct: 13  VADAGGFSKAAQRIGVATSSVTRLMDSLEASLGTALLTRTPRKVSLTDAGIAYVEQVAKV 72

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              L      + +S   P G LRI+      +  L  +L  FL   P + + +++ +   
Sbjct: 73  LDDLAEADESVFDSGASPVGALRISVPSTYSRLRLAPHLAAFLSENPRVFLDVVVADHFA 132

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+++D  D AIR+    + +SLI +KL     +  A+  YL+    P + Q+L +H  + 
Sbjct: 133 DLALDRIDVAIRIGLADRDASLIVKKLADNPRYVVASHDYLERNGTPQTPQDLAEHECLR 192

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           F            W  T  R     R+     L  N+   +++  + G GIALLP++ V 
Sbjct: 193 FA-YGGGYRTHQTW--TFRREDAGQRVDVHGHLLSNNLDILLEAVMAGRGIALLPEWQVA 249

Query: 251 DN---PNLVRIMEDV-ITP---SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +     L+R+ E    +P      VY  Y    + + K++A   F+  + R
Sbjct: 250 ADIRAGRLLRLFEHFDASPQAGDAVVYAAYLPNRRQSSKVRALVQFLETRLR 301


>gi|213622059|ref|ZP_03374842.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 241

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 2/183 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G   L
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +   + H  E  +   Q   + P G LR+         LLQ NL  F+  YPDI++ +
Sbjct: 69  ASIRPALNHIDEAMEHACQSRDI-PGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL
Sbjct: 128 DVNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQEL 187

Query: 187 DKH 189
             H
Sbjct: 188 INH 190


>gi|11342601|emb|CAC17148.1| transcriptional activator [Ochrobactrum anthropi]
          Length = 291

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 131/292 (44%), Gaps = 22/292 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L ++Q+++S Q+  LET + + LF R  RGL LT +G  
Sbjct: 9   NSLRAFEASARHLSFTKAAIELCVTQAAVSHQVKSLETRLNVTLFERLPRGLMLTSEGET 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     + + ++  T    +    +    LR+     L    L   L++F   YP I ++
Sbjct: 69  LLPTLKDAFDRIAGTLERFEAGHYRE--ILRVGAVGTLAVGWLLPRLRDFQNRYPFIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           L  +N  +DI+ +  D AIR        I ++ L++  L  + +     P   +  R P+
Sbjct: 127 LSTNNNRVDIAAEGLDYAIRFGSGAWHGIDATRLLEAPLSPLCI-----PELARELRTPV 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H L+       +  E   W          P    +  +S L++M+  + G+GI
Sbjct: 182 ---DLARHTLLRSY----RADEWTQWFVAAGVTGDMPLPRSIMFDSSLAMMEAAMQGAGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL P  +      +  +V+  E  +T   + +    ++   T  + AFR+++
Sbjct: 235 ALAPPLMFSRQLLSETIVQPFETTVTMG-SYWLTRLQSRTETQAMVAFRDWL 285


>gi|254234263|ref|ZP_04927586.1| hypothetical protein PACG_00100 [Pseudomonas aeruginosa C3719]
 gi|126166194|gb|EAZ51705.1| hypothetical protein PACG_00100 [Pseudomonas aeruginosa C3719]
          Length = 303

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  + R  SF H+A++L +S S++S  +  LE  +G+KL  R +R +  T+ GS L 
Sbjct: 12  LNVFMTIVRRRSFRHSAQELGVSTSALSHSMRNLEARLGVKLLNRTSRSVVPTDAGSALA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               + +  +     EL      P G+LR+    D  + LL   L+ F   YPD+Q++L 
Sbjct: 72  AKLEDGFQVIGEALGELDAYRTSPVGRLRLNVPRDASRLLLGPVLRRFTEAYPDLQLELS 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +DI  D  D  IR    +    +       +     A+P YL     P    +L 
Sbjct: 132 VEDRMVDIVADGYDAGIRYGGTVPQDMVAVPLTGELRWVVAASPDYLARHGVPQRPDDLL 191

Query: 188 KHNLI 192
           +H  I
Sbjct: 192 RHACI 196


>gi|94310835|ref|YP_584045.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354687|gb|ABF08776.1| Transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 301

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 10/250 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     VAR  SF  AA++L +S +++S  ++GLE  + ++LF R  R + LT+ G + 
Sbjct: 8   ELEAVLAVARRNSFRGAAQELGMSTTAVSSAVAGLEARLKVRLFNRSTRSVALTDAGLRY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +     +++   E       PSG LRI         LL      +   YPD++I +
Sbjct: 68  VERIAPALAAIKSAGEEAGSGPDVPSGTLRINAPQGAANLLLAPLFNVYAQRYPDVRIDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +++ ID+  +  D  IRL + +    +       + M   A P YL++   P   ++L
Sbjct: 128 VSESRMIDVVAEGFDAGIRLAESVPQDMIAVPLSRDVRMLVVATPAYLEHHGTPRHPRDL 187

Query: 187 DKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +H  I    + G +    +E       +D P+   RI+   +N   +I Q  +LG GI 
Sbjct: 188 LQHRSIGMRMSHGGIYQWELEHKGQKLQMDLPV---RIA---LNEMPAIRQALLLGLGIG 241

Query: 243 LLPDYIVKDN 252
            + ++ ++D 
Sbjct: 242 FISEWFIEDE 251


>gi|304398498|ref|ZP_07380371.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304354003|gb|EFM18377.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 298

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 8/244 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V    SF+ AA  L  S+S +SR+I+ LE  +GI+L  R  R L LTE G   +  
Sbjct: 12  VFARVVELQSFSEAARALGWSKSHVSREIARLELRLGIRLLQRTTRRLALTEMGQAYYPY 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +++  +  +Q+   +P+G +R+   +  G   +   L  FL  +  I + L L 
Sbjct: 72  CVRMLAEVQRAEAFVQQLHQQPAGHIRLQAPVTFGCQCVVPVLNLFLRRHLHINVDLDLT 131

Query: 130 NKDIDISMDYADCA--IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++ D   D  D A  IR R P Q +    R L  I    YAAP YL         + L 
Sbjct: 132 DRNHDRLDDQTDLAIVIRSRSPQQGNF---RVLSDIDWGLYAAPAYLAQRPAITHPEMLP 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+L+ F    P       +     R   + R S  + N+ ++++   + GSGIA LP Y
Sbjct: 189 RHDLLMFHG--PAHTAALPFRRDKQRLALDVR-SRFRANNSMALLNAALAGSGIAYLPSY 245

Query: 248 IVKD 251
           + ++
Sbjct: 246 MAQE 249


>gi|194292341|ref|YP_002008248.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193226245|emb|CAQ72194.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 585

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 23/286 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V R GSF  AA +  ++  + S+ +  LET +G++L +R  R L+LTE+G++L 
Sbjct: 7   LTLFLGVVRVGSFRRAAVEAGVTPQAASKAVRTLETYLGVRLLHRTTRKLSLTEEGARLF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +T+    +L+    +++ S  +  G +R+     LG  +L   +K F   +P I   ++
Sbjct: 67  ELTAPGMRQLDEALEQVRASRSEDDGLIRLTAPPSLGSRVLVPLVKGFREQHPGIGFDVV 126

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L +   D+     D   R+   P Q  +L+ R+L  + +   AAP YL     P ++ EL
Sbjct: 127 LSDLFTDLVEARIDVGFRVGTSPGQ--NLVARRLCDLPLVICAAPDYLARHGAPATLDEL 184

Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
            +H    F     G ++P       W   VD  +    I  +   N   + ++    G G
Sbjct: 185 MRHPCTGFRRPATGRMVP-------WELHVDGNLVYREIPAVASFNDVETEVEAVRAGIG 237

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTG 281
           I  LP Y+V D  +LV      I P ++     +Y  YP   +  G
Sbjct: 238 IGQLPAYMVHD--DLVSGRLRAILPGYSSSQVGLYMYYPHRSQMPG 281


>gi|299770562|ref|YP_003732588.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter sp.
           DR1]
 gi|298700650|gb|ADI91215.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter sp.
           DR1]
          Length = 300

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 134/289 (46%), Gaps = 13/289 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +   GSF+ AA+QL++ +++ S  I  LE  +  +L  R  R +  +  G 
Sbjct: 4   FDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELENNLQCRLLERTTRHVRPSLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPDI++
Sbjct: 64  AFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P   +
Sbjct: 124 VISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGTPQQPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           +L  H  + F          F  +       G+ +     S + VN   + +   + G+G
Sbjct: 183 DLLSHYCVNFFSTSGGRNYPFELMVN-----GKKQDYFLKSWIAVNDAENYVLSALRGAG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  +P Y V +   +  LV ++     P  +V   YP+  + + +++ F
Sbjct: 238 LIQVPRYHVANELKDGQLVEVLSAWEIPKMSVSALYPQHRQLSPRVRVF 286


>gi|332285824|ref|YP_004417735.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330429777|gb|AEC21111.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 312

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 13/248 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR GSF  AAE+L ++ +++S QI  LE + G+ LF R  R ++LT+ G++L+
Sbjct: 16  LRAFEAAARLGSFKAAAEELAVTPTAVSHQIRALEAQTGLALFDRQVRKVSLTDAGAQLY 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V  + +   E T   L++   +    + I+ T       L   + +F   +PDI +QL 
Sbjct: 76  PVLRDGFDAFEATLARLKQQRTR--ALVSISATNAFTVKWLVPRMADFRRKHPDIDLQLQ 133

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +  +D+     D AIR  R P     L    L T      A PH        +S ++L
Sbjct: 134 ASDDLVDLRSTAVDIAIRYGRGPY--PGLAIEPLFTDRFAPMANPHLGV-----VSPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +  LI F    P+  E+  W    T+ +    P+ S L+ +     +Q  V G GIAL+
Sbjct: 187 ARVPLIRFDWKQPQP-ENPTWERWFTIAQRRQPPQASQLRFSDEGHAIQAAVAGHGIALV 245

Query: 245 PDYIVKDN 252
              ++ D 
Sbjct: 246 SLALIADE 253


>gi|294648737|ref|ZP_06726197.1| transcriptional regulator [Acinetobacter haemolyticus ATCC 19194]
 gi|292825412|gb|EFF84155.1| transcriptional regulator [Acinetobacter haemolyticus ATCC 19194]
          Length = 301

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 22/275 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A  G+ + AA+ L+ S++ +SR +  LE     +LF R+ R ++LT  G K  
Sbjct: 11  IQVFVCIAHQGNLSKAAQHLNYSKAMVSRYLEHLEQTFSTRLFQRNTRKVSLTPAGEK-- 68

Query: 68  RVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              + VY +    Q +L E    P   SG +R    + L Q  +   +K+F   YP I  
Sbjct: 69  ---ALVYCENILQQQQLLEGLAAPEQHSGTIRFTCGLFLFQLGVNECIKQFKKRYPQIHF 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
            + L    +D+   + D A+R+ + + +  LI R +  I     A PHYL++   PLS  
Sbjct: 126 DVYLTENTVDLMDAHVDLALRITQKV-ADGLIARPVCQIESTFCAHPHYLQD-HTPLSHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L +H      D I     +  W    T  +P   P     + N  +++ Q C+   GI
Sbjct: 184 SQLIQH------DCIAHHTHNQYWTLFDTDQQPQNYPLNVTFKSNDVIALYQMCLKAEGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           A+LP  +V+ +     L ++  D   P  T+   Y
Sbjct: 238 AMLPTLLVRQDIAQQRLQQVFTDFSAPDLTLSLVY 272


>gi|167898351|ref|ZP_02485752.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
          Length = 303

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+ G 
Sbjct: 4   FQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   LE  +   + ++  P G LR+     L +  +   L +FL  YP I++
Sbjct: 64  AYYRRCVRLIADLEEAEGAFRAAA--PRGLLRVNLQGTLARYFVVPALPDFLARYPGIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP  + 
Sbjct: 122 HIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  + +  +     +      TVD  + E R+ + + V          V G GI  
Sbjct: 181 ALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQ 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++
Sbjct: 239 VPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWL 288


>gi|53716728|ref|YP_105766.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|121597226|ref|YP_989718.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124383076|ref|YP_001024147.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126445711|ref|YP_001078456.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|167003719|ref|ZP_02269503.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|238563675|ref|ZP_04610675.1| putative HTH-type transcriptional regulator YhjC [Burkholderia
           mallei GB8 horse 4]
 gi|254174364|ref|ZP_04881026.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254200573|ref|ZP_04906938.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254204597|ref|ZP_04910950.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254356776|ref|ZP_04973051.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52422698|gb|AAU46268.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|121225024|gb|ABM48555.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124291096|gb|ABN00366.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126238565|gb|ABO01677.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|147748185|gb|EDK55260.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754183|gb|EDK61247.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148025803|gb|EDK83926.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160695410|gb|EDP85380.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|238520227|gb|EEP83689.1| putative HTH-type transcriptional regulator YhjC [Burkholderia
           mallei GB8 horse 4]
 gi|243060779|gb|EES42965.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 351

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+ G 
Sbjct: 4   FQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVCLTQDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   LE  +   + ++  P G LR+     L +  +   L +FL  YP I++
Sbjct: 64  AYYRRCVRLIADLEEAEGAFRAAA--PRGLLRVNLQGTLARYFVVPALPDFLARYPGIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP  + 
Sbjct: 122 HIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  + +  +     +      TVD  + E R+ + + V          V G GI  
Sbjct: 181 ALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQ 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++
Sbjct: 239 VPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWL 288


>gi|50119955|ref|YP_049122.1| DNA-binding transcriptional activator GcvA [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610481|emb|CAG73926.1| glycine cleavage system transcriptional activator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 307

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 22/297 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSSLNDATRKLQSRSAK--GALTVSLLPSFAIHWLVPRLSSFNSDYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++D D   D  D AI   +      L   KL   ++    +P  L           
Sbjct: 127 IQAVDRDEDRLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPVLLTG--------- 176

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSG 240
              H L T  DL+   +       +WL+   +   +  +    + S+ + ++Q  + G G
Sbjct: 177 --NHPLKTPDDLVAHTLLHDASRRDWLSYTRQLGVQINVQQGPIFSHSAMVLQAAIHGQG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +AL  + + +   +   LV    DV+      Y    ++    GK+ AFR++I  +A
Sbjct: 235 VALANNVMAQTELEAGRLVCPFNDVLVSRNAFYLVCHDSQAELGKIAAFRHWILARA 291


>gi|227114671|ref|ZP_03828327.1| DNA-binding transcriptional activator GcvA [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 307

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 130/293 (44%), Gaps = 14/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSSLNEATRKLQSRSAK--GALTVSLLPSFAIHWLVPRLSSFNSDYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++D D   D  D AI   +      L   KL   ++    +P  L       +  +
Sbjct: 127 IQAVDRDEDRLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPVLLTGNHPLKTPDD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSGIALL 244
           L  H L+             +WL+   +   +  +    + S+ + ++Q  + G G+AL 
Sbjct: 186 LGAHTLL-------HDASRRDWLSYTRQLGVQINVQQGPIFSHSAMVLQAAIHGQGVALA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR++I  +A
Sbjct: 239 NNVMAQTEIEAGRLVCPFNDVLVSRNAFYLVCHDSQAELGKIAAFRHWILARA 291


>gi|169632900|ref|YP_001706636.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169795192|ref|YP_001712985.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|184158957|ref|YP_001847296.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213158144|ref|YP_002320195.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215482740|ref|YP_002324938.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|239501155|ref|ZP_04660465.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB900]
 gi|301346847|ref|ZP_07227588.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301511126|ref|ZP_07236363.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301596421|ref|ZP_07241429.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332857073|ref|ZP_08436379.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332870011|ref|ZP_08438987.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332874738|ref|ZP_08442608.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|169148119|emb|CAM85982.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|169151692|emb|CAP00482.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii]
 gi|183210551|gb|ACC57949.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213057304|gb|ACJ42206.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986545|gb|ACJ56844.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|322508939|gb|ADX04393.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323518925|gb|ADX93306.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332726888|gb|EGJ58402.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332732511|gb|EGJ63762.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332736999|gb|EGJ67956.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 309

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 124/273 (45%), Gaps = 11/273 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE 
Sbjct: 3   DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMDVILLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+    E  +I + E      G LRIATT DL    +   L  ++  +  +
Sbjct: 63  GQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHIIPALSHWMSAHRGL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPI--QSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + ++ ID+  +  D A+R+      +S S+I    V   +   A+P YL      
Sbjct: 123 SVHFEVGHRYIDLIEERIDIAVRMSSTAVEESDSVIPMAFVDQIL--VASPSYLNQTSPI 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L   +L+ H L++   +      +F    T ++ +     S LQ N+       C  G G
Sbjct: 181 LHPNDLNNHELLSINAMNDSRSFNFQHAKTGEK-LNIEMASRLQSNNLQVAKALCQQGHG 239

Query: 241 IA---LLPDYIVKDNPNLVRIMEDVITPSFTVY 270
           IA    L       N +L+ I+ D   P+FT+Y
Sbjct: 240 IARILYLDAQKELKNGSLIEILPDWKLPAFTLY 272


>gi|149922779|ref|ZP_01911204.1| LysR family transcriptional regulatory protein [Plesiocystis
           pacifica SIR-1]
 gi|149816399|gb|EDM75900.1| LysR family transcriptional regulatory protein [Plesiocystis
           pacifica SIR-1]
          Length = 299

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 132/290 (45%), Gaps = 11/290 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++ +  +L VF  VAR  SF+ AA+ L LS+S++S  ++ LE  +  +L  R +R +  T
Sbjct: 7   LAAELPRLLVFAEVARRRSFSAAAQALGLSRSTVSHHVAALEQALDTRLLERSSRAVRTT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G ++      +  +    +  L +   +P G L +     + +  L   +  F+  YP
Sbjct: 67  SEGERVLAAAEAILAEWVEAREALVDGRTEPRGTLVLTAPDVVAERTLAPVIAAFVRAYP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D  + L +   ++D+  D+ D AIR   P+  S L  R LV       AAP  +++   P
Sbjct: 127 DCAVDLRVTAHNLDLIRDHIDLAIRA-GPLPDSELGARLLVETDHILLAAPSLIRDG-SP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               ELD+   +       +    +  +   ++ +  P  + + V+S  ++    V G+G
Sbjct: 185 RDPSELDRAPWLDH-----RARRRYASVTRGEQTLPLPARATVVVDSAAALAALAVRGAG 239

Query: 241 IALLPDYIVK---DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAF 286
            ALLP+ +V+   +   LV +       P+ +++   P   +   K++ F
Sbjct: 240 FALLPELLVRSELERGELVHVCPGWCALPTLSLHAVIPSPRRRAAKVQRF 289


>gi|187928415|ref|YP_001898902.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725305|gb|ACD26470.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 314

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 8/240 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F  V R  S T AA+ L L+QS++SRQ+S LE  +G+KL  R  R +  T +G +
Sbjct: 12  DLLRGFVAVGRRMSITLAADDLCLTQSAVSRQVSALEEALGVKLLVRGHRSIAFTPEGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R       +L+     ++ ++ +    + I  +I +    L   L  F L YPDI ++
Sbjct: 72  LFRSADSAVQQLQDAIGAIRVAAER--RPVTITASIGVTGLWLLPRLARFQLQYPDIDVR 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +N+ +D+  +  + AIR   P  +     R L    +   A P      R   S + 
Sbjct: 130 VATNNRLVDLKNEGIELAIRYCPPSDAPPGAIR-LFGETVAPVAHPSL--GLRSLDSAEA 186

Query: 186 LDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L    L+ F   DL    ++  +WLA       +PR + L+ N +  I+   V G GIAL
Sbjct: 187 LAGLTLLDFDDRDLRRPWLQWTDWLAAAGWSHAKPR-TVLRFNQHDQIIHAAVAGQGIAL 245


>gi|118497867|ref|YP_898917.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. novicida U112]
 gi|194323840|ref|ZP_03057616.1| LysR substrate binding domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|118423773|gb|ABK90163.1| transcriptional regulator, LysR family [Francisella novicida U112]
 gi|194322204|gb|EDX19686.1| LysR substrate binding domain protein [Francisella tularensis
           subsp. novicida FTE]
          Length = 298

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 13/267 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   IS+QI  LET+    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKAIGISPPVISKQIQILETKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 64  LLYEKASLILNELEATEEKIFAEDILIDSELKISAPNSFGIKYLCNIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+ +     A+  YLKN   P +I+
Sbjct: 124 NINLSDSYINIIDEDFDLVIRI-GALDDSNLITKKLMPMPSLLCASEQYLKNYGIPKTIK 182

Query: 185 ELDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L+ H  I + +        +E  N    ++      RI     NS   ++Q C+ G GI
Sbjct: 183 DLENHLFIQYNNHSSSNRIILESVNKTEIIN---VRQRIVT---NSAEMMLQGCLDGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITP 265
           A LP + + D   +  LV ++ D   P
Sbjct: 237 AKLPLFEIIDKIHDKKLVHLLPDARNP 263


>gi|323499143|ref|ZP_08104121.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315776|gb|EGA68809.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 307

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 141/292 (48%), Gaps = 16/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   +EL  E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 73  DQSIAMVNAAQQA-VELSTEDHTEPTGALTVAAPEAFLNSVLQPFVLPFLQRYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + +ID+     D A +L  KP    +L+ +++   ++   A+P Y+     P    +
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDKP--DENLVLKEISKTNLVLCASPAYISQRGMPQHPTD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALL 244
           LD H+ I   +      +D  W    D       +S     ++  +    V+   GI + 
Sbjct: 190 LDTHDCIYLAE----NDKDNIWSFFKDEAFYSIAVSGRYAINHSQMRLNGVMADLGIGIF 245

Query: 245 PDYIVKDN---PNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
            D++VK++    ++V ++ D +  S     +   YP+      +L+ F +F+
Sbjct: 246 HDFVVKESLERGDVVEVLPDWMIKSNYHGAIAMQYPQTKYMPARLRVFIDFV 297


>gi|307319194|ref|ZP_07598624.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306895301|gb|EFN26057.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 301

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 127/271 (46%), Gaps = 12/271 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF      GSF  AAE L LS   + + +  LE  +G++L  R  R  +LTE G   +
Sbjct: 7   MAVFVKAVDLGSFAAAAEALGLSGPMVGKHVRSLEDRLGVQLINRTTRRHSLTEFGHVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  + +       +   +P GKLR+   + LG++ +   L E    YP +++ L 
Sbjct: 67  ERCRVVLAEAQAADALASDQRSEPRGKLRVTMPVHLGRHCVTPVLLELARKYPALELDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ ID++ D  D +IR       + LI R++    M   A+P YL++   P + ++L 
Sbjct: 127 FNDRIIDLAEDGFDLSIRTGPLGDRAGLIGRRVARQPMIVCASPSYLESNGHPETPEDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H+ + +    P      +WL       P+G       +++   +I    + G G+A LP
Sbjct: 187 QHSAVVYRRSGPVP----HWLFPRQGQSPVGVMPFHRFRLDDLDAIADAAIRGMGLAWLP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            ++V+   +   LVR++ +   P F +Y C+
Sbjct: 243 YWLVRGRIETGTLVRLLPE--HPPF-LYECH 270


>gi|182677306|ref|YP_001831452.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633189|gb|ACB93963.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 299

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 130/291 (44%), Gaps = 19/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  +   GS T AA  L +SQ ++S+ +  LE   G +L  R+ R +  T QG  L+
Sbjct: 7   LRAFVRIVERGSMTAAATDLGISQPAVSKLLRNLEEHTGARLIERNPRAMRPTAQGLALY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    +++  IE   S V    G LR+     +G+  L   + EF   Y  + ++L
Sbjct: 67  EAAGSALAVIDSA-IESVRSDVGAIRGNLRLHGPTCIGERHLHQIVAEFQDRYAAVTVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL+N+ +D+  +  D A+R+ +P+   +LI R++        A+P YL+ C      ++L
Sbjct: 126 ILENRTVDLIHENVDLALRMGRPVD-QNLIMRRIGLSRRILVASPEYLERCGPVRVCEDL 184

Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             H+++       G ++P    +     +V      PR   L  N+   ++     G GI
Sbjct: 185 SGHDMVVTNASLSGGVLPLHKGNQKIEISV-----RPR---LITNNAQVLVGALRTGKGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                 +V D   N +L+R++ +        +  YP +      ++AF +F
Sbjct: 237 GTAQVLLVADELKNGSLIRVLPEYEIEPTEFFLVYPSSKFLRPTVRAFVDF 287


>gi|148975061|ref|ZP_01812041.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965570|gb|EDK30819.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 310

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 13/260 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G  ++
Sbjct: 13  LASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEKALSVKLFERTTRTLIITQAGQLVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              S V        +EL  S   +PSG L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 73  D-QSVVMINAAQQAVELSTSDHTEPSGSLTVAAPEAFLNSVLQPFVVPFLNQYPEIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DIDI     D A RL  KP    SL+ ++L   ++   A+P YL +   P    +
Sbjct: 132 RAADGDIDILRQGIDIAFRLTDKP--DESLVLKELGKTNLVLCASPDYLSHKGTPSHPTD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +      +D  W    D       +S    VN     ++    G GI + 
Sbjct: 190 LSQHDCLYLAE----TDKDHIWDFLKDDEFHTVSVSGRYAVNHSQMRLKGVKEGLGIGIF 245

Query: 245 PDYIVKD---NPNLVRIMED 261
            D++++D     ++V+++ D
Sbjct: 246 HDFVIQDALAEGSVVQVLND 265


>gi|84386806|ref|ZP_00989831.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01]
 gi|84378334|gb|EAP95192.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01]
          Length = 304

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 140/291 (48%), Gaps = 22/291 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +  SGS T AA++L LS+S +S  + GLE  +G+KL  R  R  +LT+ G + +
Sbjct: 1   MQVFAQIVESGSITKAADKLDLSKSVVSHHLQGLEQHLGVKLLTRTTRRQSLTDAGQRFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   +   + E++ES    +G + I +   L  +L+   + EF+  +P I+ QL+
Sbjct: 61  QRCLEMRKLMSLAEEEVRESCSDFAGTITITSPHTLMTHLIGPAMCEFMKSHPRIEPQLL 120

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            ++  +D+   Y D ++ +   P  +S  I  KL  +H      P YL   + P  I   
Sbjct: 121 ANDMRVDLIEKYIDLSVTVGALPDSTSRAI--KLGELHQVLCCHPDYLTKAQIPQPIMPS 178

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV------NSYLSIMQYCVLGSG 240
           D    ++  D I    E  N   + +  I + ++S  Q       +S  +I    + G G
Sbjct: 179 D----LSQYDYIANQWEGINSQRSFE--INKGKVSTYQFRASRIGDSVPTIRMMALNGLG 232

Query: 241 IALLPDYIVKDN---PNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA LP   ++++     LV I+  + V+  SF V   Y   L+   +++AF
Sbjct: 233 IACLPKQAIEEDLKKGTLVNILPKDQVLKTSFYVVHNY--GLQVPARIRAF 281


>gi|330977535|gb|EGH77481.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 315

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 9/271 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLGVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHVRMGCTEGFGSFFITPQLSHFLDSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N     
Sbjct: 131 ISLDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLGLYATQAYLDNHSPIK 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I++ D +    E       +     + R + + +  Y + +Q    G  +
Sbjct: 190 HKADLSEHVFISYVDDLAFSSELLYMSNLLPNAQAQLRSTSV-IPQYTAALQ----GRAL 244

Query: 242 ALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
           A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 245 AILPCFLAAQDPRLLPVLREEVNITRQFWMY 275


>gi|293412273|ref|ZP_06654996.1| transcriptional regulator [Escherichia coli B354]
 gi|291469044|gb|EFF11535.1| transcriptional regulator [Escherichia coli B354]
          Length = 298

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 125/261 (47%), Gaps = 9/261 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+    F ++A  GS++ AA ++ +S+S +SR+++ LE  +G++L  R  R L LT  
Sbjct: 2   IDWNDYYYFALIADEGSYSQAALRVGVSKSVLSRRMAALEERLGVRLIQRTTRRLALTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  + E  +  +  +   P G LR++  + + +      + EF+  +P  
Sbjct: 62  GEQFAVECRALVAQGERARAVVMAAQESPQGMLRVSAPVFMAETWFGEFVSEFIARWPLA 121

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++QL+  N+ +D+  +  D A +     +  S+L  +KL T      A+  +L   R P 
Sbjct: 122 KVQLLAINRPVDMVAEGIDIALVTASGALADSTLHYKKLHTQADILVASSQWL--ARHP- 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +D  N +  G L         W L   D+ I     + LQ N+   ++Q  + G+G
Sbjct: 179 QVKAIDDLNRVD-GILRLTNNGGSQWQLMNGDQEITLHPEARLQTNNIRVMLQAVLGGNG 237

Query: 241 IALLPDYIVKD---NPNLVRI 258
           +ALLP +  K    N  LVR+
Sbjct: 238 VALLPQFACKQGLANGELVRL 258


>gi|288957961|ref|YP_003448302.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288910269|dbj|BAI71758.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 338

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 124/270 (45%), Gaps = 11/270 (4%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +L +S S++ + ++ LE  +GI+LF+R  R LTLT +G         ++ ++E  ++EL 
Sbjct: 25  KLGISASAVGKAVARLEERLGIRLFHRSTRSLTLTPEGELFRDRCRRIFCEIEAAELELS 84

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
           ++   P GKLR+  ++ L   L+   +  F+  YP+I++ L   ++ +D+  +  D  IR
Sbjct: 85  QTRAAPRGKLRV--SLPLIGMLMMPAVMAFMRAYPEIELDLDFTDRLVDVIDEGFDAVIR 142

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
             +  + S L+ R++         +P Y      P   ++L  H  +      P   +  
Sbjct: 143 TGE-ARDSRLMMRRVGAFSHRIVGSPEYFAAHGVPKVPEDLTAHACLHHK--YPSTGKLE 199

Query: 206 NWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--GSGIALLPDYIVK---DNPNLVRIME 260
            W    D    +  +    V S L   Q C+   G G+A LP +  +       LV +++
Sbjct: 200 RWPLARDGVDIDMALPVTLVASTLEP-QICLAEEGFGLACLPQFAARAQLSRGTLVSVLD 258

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D I      +  +P +   + KL AF +F+
Sbjct: 259 DFIRDVGAFHILWPASRHPSPKLSAFVSFM 288


>gi|262278283|ref|ZP_06056068.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258634|gb|EEY77367.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 309

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 125/272 (45%), Gaps = 9/272 (3%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE 
Sbjct: 3   DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMDVILLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+    E  +I + E      G LRIATT DL    L   L  ++  +  +
Sbjct: 63  GQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHLIPALSHWMSAHRGL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +   + ++ ID+  +  D A+R+   P++ SS I   +  +     A+P YL      +
Sbjct: 123 SVHFEVGHRYIDLIEERIDIAVRMSSTPVEESSSI-IPMAFVDQILVASPSYLNQSSPIV 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H L++   +      +F  + T +    E + S LQ N+       C  G GI
Sbjct: 182 HPNDLRDHELLSINVMNDSRHFNFQHVKTGETLNIEMQ-SRLQSNNLQVAKALCQQGHGI 240

Query: 242 A---LLPDYIVKDNPNLVRIMEDVITPSFTVY 270
           A    L       N +L+ +M D   P+FT+Y
Sbjct: 241 ARILYLDAQKELKNGSLIELMPDWKLPAFTLY 272


>gi|193077940|gb|ABO12849.2| putative transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 309

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 124/273 (45%), Gaps = 11/273 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE 
Sbjct: 3   DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMDVILLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+    E  +I + E      G LRIATT DL    +   L  ++  +  +
Sbjct: 63  GQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHIIPALSHWMSAHRGL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPI--QSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + ++ ID+  +  D A+R+      +S S+I    V   +   A+P YL      
Sbjct: 123 SVHFEVGHRYIDLIEERIDIAVRMSSTAVEESDSVIPMAFVDQIL--VASPSYLNQTSPI 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L   +L+ H L++   +      +F    T ++ +     S LQ N+       C  G G
Sbjct: 181 LHPNDLNNHELLSINAMNDSRSFNFKHAKTGEK-LNIEMASRLQSNNLQVAKALCQQGHG 239

Query: 241 IA---LLPDYIVKDNPNLVRIMEDVITPSFTVY 270
           IA    L       N +L+ I+ D   P+FT+Y
Sbjct: 240 IARILYLDAQKELKNGSLIEILPDWKLPAFTLY 272


>gi|153011271|ref|YP_001372485.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151563159|gb|ABS16656.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 295

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 27/295 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF   AR  SFT AAE+L ++Q+++S QI  LE  VG  LF R  R + LTE G +L 
Sbjct: 11  IRVFESAARHASFTRAAEELGMTQAAVSYQIKILEERVGAPLFLRMPRQVELTELGRQLA 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +E +  +      L+E +    G L I+       N L   L  F + +P + ++L 
Sbjct: 71  PAITEAFETMRNAFASLREDA---EGTLSISVLATFAANWLAHRLGSFQMRHPSLAVRLD 127

Query: 128 LDNKDIDISMDYADCAIRL---RKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             +  ID +    D AIR    + P +++  LI+     +   A AA   +   +EP  +
Sbjct: 128 TSDSMIDFATTNVDIAIRSGFGKWPGLEAHQLIKASFTPMLSPALAA--TIGGVKEPADL 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGS 239
             L    +I   D  P     F   A ++ P      + R+    +       +  V G 
Sbjct: 186 LRL---KIIDVSD--PWWNIWFK-AAGIENPQMQGNTQSRLGAQHIEG-----RATVAGQ 234

Query: 240 GIALL-PDY--IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+ +L P +  I      L++  + +     + +  YP++ +NT K++AFR +I 
Sbjct: 235 GVGILTPAFHQIEIATGQLIQPFDILGDDGRSYWLVYPKSRRNTPKVRAFREWIL 289


>gi|161525726|ref|YP_001580738.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189349552|ref|YP_001945180.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160343155|gb|ABX16241.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189333574|dbj|BAG42644.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 327

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 129/287 (44%), Gaps = 12/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE+ +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEHQSFRRAAHHLGVSNALVTRSIAMLESHLNTRLIHRTTRNLSLTEAGVRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  + +++ +P G LR+  +  L    L   L  F   YP++++Q+ 
Sbjct: 67  DGCRALLEEFDHLEASVAQATHEPGGTLRVVASGLLSPVALTPLLGRFRHRYPELRVQMT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  I        + +LI + L      A A+P YL+   EP +  +L
Sbjct: 127 IAEAPLDVLDAGYDVGIVTGDRFDGNPALIAQALAPNPFVACASPAYLERRGEPRTPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H+ +    L P        L   D  +     R +C  VN    +    V GSGIA+L
Sbjct: 187 PRHDWVA---LAPHQHPGAWRLVGPDARVHTVTVRPAC-TVNQLALVHAATVAGSGIAML 242

Query: 245 PDYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           P++ V    D+  LVR++    +  P   +   YP       + ++F
Sbjct: 243 PEHCVADAIDSGTLVRLLPGYRIDDPHTQLSLVYPNRQFVPARTRSF 289


>gi|107023421|ref|YP_621748.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|105893610|gb|ABF76775.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
          Length = 349

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 123/288 (42%), Gaps = 12/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT  G+ 
Sbjct: 45  DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTADGAL 104

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +      +       G+L +     + + ++   L      +P +Q+ 
Sbjct: 105 LLERGRRLLAEADELDRLFRRRDRDVVGRLNVDVPSRIARRVVAPALPSLFRRHPKLQLS 164

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P     
Sbjct: 165 LGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFTLINCASPDYLRECGVPEHPDA 223

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241
           L  H     G   P    +  W    D   G+     L     VN+  + +  C+ G G+
Sbjct: 224 L-AHGHWAIGYASPTTGRELGWEYCAD---GQRHTLTLPSRVIVNNAETYIAGCIAGMGL 279

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +P + V+    +  LV +M         V   YP     + +L AF
Sbjct: 280 IQIPRFDVEHLLASGALVDVMPGHRAEPMDVSAVYPHRRHRSRRLNAF 327


>gi|152988999|ref|YP_001349595.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964157|gb|ABR86182.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 303

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  + R  SF H+A++L +S S++S  +  LE  +G+KL  R +R +  T+ GS L 
Sbjct: 12  LNVFMTIVRRRSFRHSAQELGVSTSALSHSMRNLEARLGVKLLNRTSRSVVPTDAGSALA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               + +  +     EL      P G+LR+    D  + L+   L+ F   YPD+Q++L 
Sbjct: 72  AKLEDGFQVIGEALGELDAYRTSPVGRLRLNVPRDASRLLVGPVLRRFTEAYPDLQLELS 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +DI  D  D  IR    +    +       +     AAP YL     P    +L 
Sbjct: 132 VEDRMVDIVADGYDAGIRYGGTVPQDMVAVPLTGELRWVVAAAPDYLARHGVPERPDDLL 191

Query: 188 KHNLI 192
           +H  I
Sbjct: 192 RHACI 196


>gi|13474402|ref|NP_105970.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025155|dbj|BAB51756.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 296

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 138/305 (45%), Gaps = 46/305 (15%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +R F  VAR GS   AA  L ++ S++ R+I+ LE  +G  +F +   G  LT  
Sbjct: 2   IDWDDVRYFLAVARGGSVRAAAVHLGVNHSTVLRRIAQLEERLGAHMFEKLPSGYRLTAA 61

Query: 63  GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G ++  + +++    H+LE T++  ++ SV+  G LR+     L  +LL  +  +F  L+
Sbjct: 62  GEEVLELANQMEASSHQLE-TRVFGRDQSVR--GLLRVTLAPTLATHLLMPDFADFARLH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH-----YL 174
           PDI+++++   +  +++   AD AIR+        +  RK + +++H    P      Y+
Sbjct: 119 PDIEMEILSSGELANLTNREADVAIRV--------VYDRKTLPLNLHGLKGPELFGGVYM 170

Query: 175 KNCR---------EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV 225
              R         +P+    +  H +  +   +P     F    T D   GE +I  ++ 
Sbjct: 171 SRDRLTVSRAGAPDPIRWIVISNHGIPDWAREVPTTGVPFR---TTD---GEAQIVAVRQ 224

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
                       G G+  LP +I   +P LVR+    +    T++       + T +++ 
Sbjct: 225 ------------GLGMTTLPCFIGDADPLLVRVPGTDLHMYGTLWLLTQGETRKTKRVRL 272

Query: 286 FRNFI 290
           F  F+
Sbjct: 273 FTEFV 277


>gi|330503507|ref|YP_004380376.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328917793|gb|AEB58624.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 316

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 10/252 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE  +G  LF R    + +T  G  
Sbjct: 8   DQLELFLDVLETGSFSAAARRHPLTPSAVARRIDALERAMGSSLFSRTTHAVRVTPAGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL   P + +Q
Sbjct: 68  FAERARRILAELHLARAEAVSLSSAPEGLIRIDAPSPFGRRHLAPAIADFLRANPGLDVQ 127

Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  ID+  ++    D  +R+  P+  S L+   L ++     A+P YL+    P S
Sbjct: 128 LRLIDSFIDLQGEHLGEVDIVVRI-GPLPDSRLVATPLASMIRIVCASPDYLRRRGIPRS 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSG 240
             EL++H+ + +  L P     + W   VD  +   +P+      N+  +++   + G G
Sbjct: 187 PLELEQHDGLDWDSLAPP----YAWRFEVDGKLQLCKPKRLRQTSNNAETLLFGALAGLG 242

Query: 241 IALLPDYIVKDN 252
           +A LP ++  ++
Sbjct: 243 VAHLPTWMSSEH 254


>gi|222106214|ref|YP_002547005.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221737393|gb|ACM38289.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 299

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 12/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  L+VF + A   +F   A +L ++ +++SR I+ LE ++G++LF R  R + LT  G
Sbjct: 3   DYKALKVFLLAAEKRNFAQVARELDMTPAAVSRAIAALERDLGVQLFVRTTRQVALTTDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +            L++ + +++ ++    G+LRI+     G+ +L   L  F  LYP + 
Sbjct: 63  AIFAAQVQPAVTALDSARRDIRNANKSDEGRLRISVPTWFGKAMLPPILSGFRTLYPKMS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP-HYLKNCREPLS 182
            ++ L +  ++I  D  D AIR+         I RK+  +     AAP     + R P  
Sbjct: 123 FEISLSDGLVNIVDDDYDLAIRISSQPSDKFTIWRKIHIVRRILVAAPASKFVDMRHP-- 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL   + + +     +     NW L+     +          NS   +      G+G+
Sbjct: 181 -GELTPDDCLAYSGESRRE----NWVLSDGGSSMTISAGGAFSANSGEVLADMAADGAGV 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           A+LP + V ++     LV ++     P   +   YP       ++ +F  F
Sbjct: 236 AMLPGFHVSEHLKTGRLVHVLRGWSPPDLWLTLYYPPYQALPPRIASFSKF 286


>gi|56551677|ref|YP_162516.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|260752741|ref|YP_003225634.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56543251|gb|AAV89405.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|258552104|gb|ACV75050.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 315

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 138/298 (46%), Gaps = 24/298 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VAR  +F+ AA++L +S S++S+ I  LE  +G+ LF+R  R + LT+ G++
Sbjct: 7   DGLVAFVCVARLANFSSAAQRLGVSPSAVSQSIRALEQRLGVMLFHRTTRSVNLTDAGAR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +L +   ++ + S  PSG LR+          L+  L++FL  YP+++++
Sbjct: 67  FLARVQPAVDELISASTDVGDDSGPPSGLLRLIMPRSGYLLALRPLLRDFLEAYPEMKME 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLS 182
           + +DN  +D+S    D  IR    ++          ++  +  A+P Y+      R P  
Sbjct: 127 IAIDNTMVDLSSHGFDAGIRFGGFVEKDVTSVNIGPSMRWYVVASPEYVAKRGIARHP-- 184

Query: 183 IQELDKHNLITF----GDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            ++L  H  I F    G++I +     ++ N +  +D          L +     ++Q  
Sbjct: 185 -RDLLGHECIKFRRTSGEIIQRWNFTNKNENLMINID--------GRLVLGDLAVMVQAA 235

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G G+    +  V+   +   LVR++ D   P+  +   YP   + + K+K   +++
Sbjct: 236 LDGLGVIYTVNGYVERFIEEGRLVRMLADWSPPTSGLVLYYPAKPRISRKVKVLIDYL 293


>gi|309782089|ref|ZP_07676819.1| regulatory protein [Ralstonia sp. 5_7_47FAA]
 gi|308919155|gb|EFP64822.1| regulatory protein [Ralstonia sp. 5_7_47FAA]
          Length = 314

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 8/240 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F  V R  S T AA+ L L+QS++SRQ+S LE  +G+KL  R  R +  T +G +
Sbjct: 12  DLLRGFVAVGRRMSITLAADDLCLTQSAVSRQVSALEEALGVKLLVRGHRSIAFTPEGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R       +L+     ++ ++ +    + I  +I +    L   L  F L YPDI ++
Sbjct: 72  LFRSADSAVQQLQDAIGAIRVAAER--RPVTITASIGVTGLWLLPRLARFQLQYPDIDVR 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +N+ +D+  +  + AIR   P  +     R L    +   A P      R   S + 
Sbjct: 130 VATNNRLVDLKNEGIELAIRYCPPGDAPPGAIR-LFGETVAPVAHPSL--GLRSLDSAEA 186

Query: 186 LDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L    L+ F   DL    ++  +WLA       +PR + L+ N +  I+   V G GIAL
Sbjct: 187 LAGLTLLDFDDRDLRRPWLQWTDWLAAAGWSHAKPR-TVLRFNQHDQIIHAAVAGQGIAL 245


>gi|200390007|ref|ZP_03216618.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199602452|gb|EDZ00998.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 301

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 117/245 (47%), Gaps = 3/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  F   YP++++ 
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFWRQYPELELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +
Sbjct: 125 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+  +
Sbjct: 185 LQKHHAV--GYLNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLIRV 242

Query: 245 PDYIV 249
             Y+V
Sbjct: 243 ASYLV 247


>gi|152983120|ref|YP_001354504.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151283197|gb|ABR91607.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 303

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 124/292 (42%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +    F  V   G FT A   L + +S++S ++  LE+ +G++L  R +R   +T+ 
Sbjct: 2   LDLNDFYFFVHVVDRGGFTAAGRTLQVPKSTLSHRMQQLESNLGVRLLNRTSRRFGMTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +R    +  + E  +  ++    +P+G +R    +   Q  L   + +FL +YP +
Sbjct: 62  GEEFYRHAVAMLREAELAETTVRNRLGEPTGTVRCTAGVATMQFALAEIITDFLKIYPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +     ++ IDI  +  D AIR    P+  S+L+Q+ L       +A   Y+     P 
Sbjct: 122 NVVAHSADRPIDIVGENYDIAIRAHTDPLPDSNLVQKTLAPTPWFLFAGADYIDANGAPK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +         +     ++     I  P    L  +  + + +  + G GI
Sbjct: 182 KPQDLQNHPSLFMMRTNVAPVWKLRHVSQAKDEIVMPLTPRLLSDDMVGLQRAAINGLGI 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP YI ++   +  L R++ D I    T+    P      G L + R F+
Sbjct: 242 VALPSYICREAVRSGALRRVLPDWIAGDATITALIP---YRKGLLPSVRVFL 290


>gi|167742735|ref|ZP_02415509.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
          Length = 297

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+ G 
Sbjct: 4   FQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   LE  +   + ++  P G LR+     L +  +   L +FL  YP I++
Sbjct: 64  AYYRRCVRLIADLEEAEGAFRAAA--PRGLLRVNLQGTLARYFVVPALPDFLARYPGIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP  + 
Sbjct: 122 HIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  + +  +     +      TVD  + E R+ + + V          V G GI  
Sbjct: 181 ALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQ 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++
Sbjct: 239 VPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWL 288


>gi|107102673|ref|ZP_01366591.1| hypothetical protein PaerPA_01003738 [Pseudomonas aeruginosa PACS2]
          Length = 271

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 21/232 (9%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ S++S+ I+ LE  +G +L  R  R L LT +G   +     +   LE  +    E++
Sbjct: 1   MTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCTFYERGVRILADLEEAERCASENA 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             P G+LR+   +  G + L   + EFL  +P++ + ++L ++ +DI     D A+R   
Sbjct: 61  A-PRGRLRVNANVPFGHHFLLPLVPEFLAQHPEVTLDIVLTDEVVDILEQRTDVAVRA-G 118

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P++SSSL+ RKL +  M    AP YL     P + Q L  HN +             N++
Sbjct: 119 PLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQALLGHNRL-----------GANYV 167

Query: 209 ATVD----RPIGEPRISCLQVNSYLS----IMQYCVLGSGIALLPDYIVKDN 252
            T      R  GE  +  L  N+  S    + +  V G G+A L  + V+++
Sbjct: 168 RTRSGWPLRDAGEELVVPLSGNAQASDGEALRRLAVAGLGLARLAAFQVRED 219


>gi|317054545|ref|YP_004118570.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952540|gb|ADU72014.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 304

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 122/254 (48%), Gaps = 17/254 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +  D+L  F  VARSGSF+ AA  +  SQSS++  +S LE E  + LF R  R ++LT
Sbjct: 1   MKYSLDQLMTFEQVARSGSFSAAARVMKRSQSSVNMAMSNLEDEFNVSLFVRSPRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+ L      V  +     +E + S+   + +  ++  I++    +   L EF + +P
Sbjct: 61  PEGNTLREYVKTVLEQCNA--LEQRVSAFNIATEAHVSLAIEVPYTTVAAVLYEFAMHFP 118

Query: 121 DIQIQL---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKN 176
           D+ I +      + +  +  +  D  I + +P+ S ++   +L  + M H  ++ H L  
Sbjct: 119 DVDIHVREPFQGDVEAMVRKNEVDVGISMARPVDSDTIEFAQLGKLIMVHVVSSQHPLAQ 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            R P+S  +L +   ITFG       E    ++T +  +G P     +V SY +++   +
Sbjct: 179 -RLPVSFADLHRWRHITFG-------EQQKTISTTEY-LGSPM--TWRVESYNAMIDAAI 227

Query: 237 LGSGIALLPDYIVK 250
            G G A LP   V+
Sbjct: 228 AGLGWASLPRIFVQ 241


>gi|298293007|ref|YP_003694946.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929518|gb|ADH90327.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 301

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 134/302 (44%), Gaps = 19/302 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VAR  SF  +A++  +S S++S  +  LE ++G++L  R  R +TLTE G
Sbjct: 5   DLSLLDAFVAVARQRSFRQSAKERGVSASTLSEAMRRLEEQLGVRLMNRTTRSVTLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          +     E+      P G LR+     + +  L   L +FL  YP++ 
Sbjct: 65  RRLFDRLVPALSDVGEALDEVNHFRDTPIGTLRLNVPTPVARGALAPLLPDFLAAYPELT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLS 182
           +++ +D + +D+     D   R  + + +  +I   L     +  YA+P YL     P  
Sbjct: 125 VEVHIDERFVDVVEGGFDAGARYGESL-AQDMIAVPLGPPQRYGVYASPVYLARRGTPCV 183

Query: 183 IQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            ++L +H  I      G ++P   E       +     EPR   L  NS    M+  + G
Sbjct: 184 PEDLLEHRCICHRFASGAVLPWEFEKDGRTLRI-----EPR-GPLISNSVDVEMRAAIDG 237

Query: 239 SGIAL-LPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+A+   D+   +V D   LV ++ED + P    +  YP        L+AF +F+  +A
Sbjct: 238 IGVAMNFTDFAAPMVADG-RLVSLLEDWLPPFEGPFLYYPSRRHMPAALRAFVDFV--RA 294

Query: 295 RD 296
           R+
Sbjct: 295 RN 296


>gi|221065835|ref|ZP_03541940.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710858|gb|EED66226.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 311

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 139/301 (46%), Gaps = 33/301 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  V R  SF  AA   + S + +S++I  LE E+G+KL +R  R + +TEQG +
Sbjct: 5   EDLRVFTTVVRKASFAEAAAAHNASPAFVSKRIRLLEQELGVKLLHRTTRRVAVTEQGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +  ++E    E+  +  +P G LR++T+   G++++   L + +  YP +Q++
Sbjct: 65  VYHWAQRILDEVEHLLQEVDVTRRQPRGLLRVSTSFGFGRHVVAPALSQLIAQYPALQLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R L   H    AAP Y++    P ++ E
Sbjct: 125 LEVFDRIVDVAAEGFDLDVRVGDEI-APHLIARHLADNHRVLCAAPAYVQRRGSPRTLDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC------------LQVNSYLSIMQ 233
           L  H+ +   +               D P G  ++              L  N     +Q
Sbjct: 184 LAAHDCLVIKER--------------DHPFGVWKLRSGSQERSVKVTGPLSTNHGEMAVQ 229

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
           +   G GI L   + V  +     +++  + P +     ++  YP  L+ + K++    F
Sbjct: 230 WARDGHGIVLRSLWDVAADLQAGHLLQ--LLPEWQQQANIWAVYPTRLERSAKVRVCVEF 287

Query: 290 I 290
           +
Sbjct: 288 L 288


>gi|325121178|gb|ADY80701.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 326

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G  + 
Sbjct: 10  LKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDGKLIL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +QI   
Sbjct: 70  ERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHIAPILSKLMMLYPKLQIHFD 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+     D  IR+   I + ++I +KL +      A+P YL     P SI++L 
Sbjct: 130 TIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCASPSYLLKHGVPDSIEDLQ 188

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H+ +T  +   +      W    A+ D  +  +PR      N+   I Q  + G GI  
Sbjct: 189 THDCLTISE---RDQSSVLWKFRHASEDVSVHIKPRFVS---NNGEIIHQLAIEGHGIIF 242

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
              + V D   L+      I P +     V+  YP  LK++ KL+    FI
Sbjct: 243 RSIWDVAD--ELITGQLQHILPEYWQDADVWAVYPSRLKSSSKLQTCILFI 291


>gi|193076608|gb|ABO11281.2| Transcriptional regulator [Acinetobacter baumannii ATCC 17978]
          Length = 326

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G  + 
Sbjct: 10  LKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDGKLIL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +QI   
Sbjct: 70  ERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHIAPILSKLMMLYPKLQIHFD 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+     D  IR+   I + ++I +KL +      A+P YL     P SI++L 
Sbjct: 130 TIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCASPSYLLKHGVPDSIEDLQ 188

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H+ +T  +   +      W    A+ D  +  +PR      N+   I Q  + G GI  
Sbjct: 189 THDCLTISE---RDQSSVLWKFRHASEDVSVHIKPRFVS---NNGEIIHQLAIEGHGIIF 242

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
              + V D   L+      I P +     V+  YP  LK++ KL+    FI
Sbjct: 243 RSIWDVAD--ELITGQLQHILPEYWQDADVWAVYPSRLKSSSKLQTCILFI 291


>gi|78062834|ref|YP_372742.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970719|gb|ABB12098.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 330

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 137/296 (46%), Gaps = 23/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSF+  A+++H+S S+++R+++ +E  +G+ L +R    +TLTE G    
Sbjct: 24  MRAFVRVVETGSFSAVAKEMHVSTSTVARKVTAIEEALGVALLHRSTHSVTLTEAGHIYL 83

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+ + 
Sbjct: 84  ERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLVAPFLARYPTIQLDVR 143

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D  I   +    + ++ R L        A P YL  C  P +  EL 
Sbjct: 144 LTDNHNDLVAGGFDLDIHEGENYLDNLVVHR-LSRNDSILCATPGYLDRCGRPSTPDELK 202

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGIA 242
           +HN + +  + P+   D  W    D   G+   S L   + ++     +++    G GIA
Sbjct: 203 QHNCLRY--VHPEG--DPRW----DLVNGDAHHSLLPAGNLVTDHSELLLEATCAGLGIA 254

Query: 243 LLPDYIVKDNPNLVRI--------MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               ++V+D     R+        +++ +T  + +Y  Y    +++ KL+  ++F+
Sbjct: 255 EFEIWLVRDLLASGRLEAVLPRYRLQNRLTGEY-IYIAYLANRRSSAKLRVLKDFL 309


>gi|294633908|ref|ZP_06712465.1| LysR family transcriptional regulator [Streptomyces sp. e14]
 gi|292830160|gb|EFF88512.1| LysR family transcriptional regulator [Streptomyces sp. e14]
          Length = 303

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 128/294 (43%), Gaps = 28/294 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA+ GSF+ AA++L  S S +SR ++ LE +VG++L  R AR ++LT+ G +     
Sbjct: 10  FVTVAQVGSFSGAAKKLGSSGSLVSRHVAELERQVGVRLVNRTARSVSLTQPGQRYAEFA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  ++E     + +   +P G L +     +G   L   +  F   +P IQ++  L  
Sbjct: 70  ARILDEIEAEDAGIAQLHDRPEGTLSVICPKWIGSLDLGDAIAAFSAAHPKIQVRFELGG 129

Query: 131 KDIDISMDYADCAIRLR---KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              D + D+ D    +    + ++ SS+  +K+ ++     A+  Y+  C       +L 
Sbjct: 130 MS-DRTYDFLDSGFDVAFHTRDLRDSSVRLKKISSLPFVLCASEDYVARCGALEHPNDLA 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--------VNSYLSIMQYCVLGS 239
            H+ +         + D  W       IG    S L          NSY+++ +  V G 
Sbjct: 189 AHDCLVH-------VNDPVWR------IGHGHASTLHKIRNIAFSSNSYIALQKAAVHGR 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIALLP     D+     L  ++ D+  P   +Y  Y        K+  F +F+
Sbjct: 236 GIALLPQRPAYDDLVSGALQVLLPDLAVPDRPLYAIYGPGQDTPRKVSVFLDFL 289


>gi|269104470|ref|ZP_06157166.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161110|gb|EEZ39607.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 308

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 136/291 (46%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +   ++   +FT AA++L +S+S +S+QI  LE  +G +L  R  R + LTE G + 
Sbjct: 7   QMVILATISHEQNFTRAADRLGISKSQVSKQIRLLEERLGCQLVQRSTRTVVLTEIGLQY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +   +  +     +  G LRI      G + +   L EF  L+P++++++
Sbjct: 67  AEYGQQLLDTVNEAEAMVAGYRNEVKGVLRIGIAQSFGNHQITPALAEFQQLHPELELEI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   ++  +  DC I + +      ++ R+L   H    A+P Y+    +P +  +L
Sbjct: 127 SLFDHRPNLLEEGFDCWIAIHEH-PPEGMVARRLANCHFMVVASPEYIAQHGKPETPGDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +HN IT+     K +   NW  T D      R     ++++  +++   V G GIA L 
Sbjct: 186 RRHNCITYQSRERKYV---NWEFTRDGIHQSIRARGTYRIDNAPAVLDATVSGLGIAYLS 242

Query: 246 DYIVKDNPNLVRIMEDVITPSFT------VYFCYPEALKNTGKLKAFRNFI 290
            Y++ D     ++++  + P +       +Y  YP       K+++F +F+
Sbjct: 243 TYLLTDEIEKGKLIQ--LLPEWKADLELPIYAVYPRRKYLAPKVRSFIDFM 291


>gi|229190506|ref|ZP_04317503.1| Transcriptional regulator, LysR [Bacillus cereus ATCC 10876]
 gi|228592851|gb|EEK50673.1| Transcriptional regulator, LysR [Bacillus cereus ATCC 10876]
          Length = 300

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 147/314 (46%), Gaps = 41/314 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPLTILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISIPLYKSDLTLVVPTGHRIAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    + FN+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTV--------YFC-----YP 274
           +Q    G GI +LP    D++  +N   ++I     TP+  +        Y C     + 
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNNNIQAIKIENP--TPTIEIGLIYRKDKYMCAATQEFI 288

Query: 275 EALKNTGKLKAFRN 288
           E LK+T  +++F+N
Sbjct: 289 EQLKST--VRSFQN 300


>gi|299769244|ref|YP_003731270.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
 gi|298699332|gb|ADI89897.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
          Length = 309

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 125/272 (45%), Gaps = 9/272 (3%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE 
Sbjct: 3   DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLEHEMDVTLLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+    E  +I + E      G LRIATT DL    L   L  ++  +  +
Sbjct: 63  GQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHLIPALSHWMSAHRGL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +   + ++ ID+  +  D A+R+   P++ SS I   +  +     A+P YL      +
Sbjct: 123 SVHFEVGHRYIDLIEERIDIAVRMSSTPVEESSSI-IPMAFVDQILIASPSYLNQSSPIV 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H L++   +      +F  + T +    E + S LQ N+       C  G GI
Sbjct: 182 HPNDLRDHELLSINVMNDSRHFNFQHVKTGETLNIEMQ-SRLQSNNLQVAKALCQQGHGI 240

Query: 242 A---LLPDYIVKDNPNLVRIMEDVITPSFTVY 270
           A    L       N +L+ +M D   P+FT+Y
Sbjct: 241 ARILYLDAQKELKNGSLIELMPDWKLPTFTLY 272


>gi|262278791|ref|ZP_06056576.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259142|gb|EEY77875.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 296

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT  G K
Sbjct: 5   DCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLTRTTRQMNLTSCGEK 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP I+I 
Sbjct: 65  FYQHSKVILSEFEWAAYEISYNQQYPEGELKLNTPMSFSNIFLQNIISDFIEKYPSIKID 124

Query: 126 LILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L + ++ +D++ +  D  IR+    P  ++S I   L T   + YA P Y      P S+
Sbjct: 125 LFMTDQLLDMNNNKFDLTIRVDGSPPNLANSKI---LNTYQRYLYATPEYFNQHGLPASL 181

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGS 239
           +EL  H  LI + D   K +          +   E   +C  V   N+   ++  C+   
Sbjct: 182 EELKDHKFLIYYQDSRHKKL-------IFQKDQKEVSFNCFPVMTCNNGELLLDMCLKDH 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+
Sbjct: 235 GIVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFL 288


>gi|254255017|ref|ZP_04948334.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124899662|gb|EAY71505.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 302

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 127/275 (46%), Gaps = 14/275 (5%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 87  GSAQQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R  +P   + ++ R+L        AAP YL     P +  +L +HN I     I +  E 
Sbjct: 147 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGVPATPHDLTRHNCIG----IRQGDEG 201

Query: 205 FN-WLATVDRPIGEP----RISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNL 255
           +  W  T  R         RI   L  N     +++ + G GI +  ++ ++D   +  L
Sbjct: 202 YGIWRLTSGRGAARHTEAVRIGGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADGRL 261

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V ++ D  TPS  +Y  Y +  + + +++AF +F+
Sbjct: 262 VVVLPDHETPSADIYAVYAQRHQMSARIRAFVDFL 296


>gi|257141494|ref|ZP_05589756.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 297

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 133/303 (43%), Gaps = 25/303 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE +  ++L  R  R  T+TE G
Sbjct: 3   DLNDLYYFVKVVEHGGFTQAGRALGVPKSTLSRRIAALEAQYDVRLLQRTTRHFTVTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E  +  ++    +P G + ++    L +  + G +  F+ ++P +Q
Sbjct: 63  REFYDRCLGVLVEAEAAREVIERKHAEPQGIVSLSCPTALLEYRVSGLVARFMAIHPKVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAPH L     P S
Sbjct: 123 VHLEATNRRVDLLSEGIDLALRVRFPPLEDSGLVMRVLGDSPQRLVAAPHLLGGRDLPTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235
             EL     + +G   P+     + L  +  P G        PR      +   ++    
Sbjct: 183 PDELAGVPSVDWGP--PR-----HHLWQLVGPQGVEAQLRHHPRFIT---DDMHALRDAA 232

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291
           + G GIA LP  +V+D   +  LV ++   +     ++  +P      G L   R  I F
Sbjct: 233 LHGVGIAQLPCMVVEDDLRDGTLVDVLPGWVPKGGVIHAVFP---SRRGLLPRVRLLIDF 289

Query: 292 LKA 294
           L A
Sbjct: 290 LAA 292


>gi|153002726|ref|YP_001368407.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151367344|gb|ABS10344.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 306

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 123/278 (44%), Gaps = 21/278 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA+ GS+T AA+ L ++ S++S+ I  LET +G KL +R  R ++LT  G   
Sbjct: 8   EIRHFVTVAQLGSYTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        L+  Q  L      PSG++R+   +  G+  +   L      YP +++ +
Sbjct: 68  LKDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLALSQKYPKLELSI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++  D+  D  D A+R+ +   +  L+ R+L        A+P Y      P    +L
Sbjct: 128 TFNDRTTDLFSDGIDLAVRVGQLGDTVDLVARRLGEQRRVICASPAYFARLGTPKDKADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWL--------ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +H  I    L     +   WL           D P+      C       +I+   + G
Sbjct: 188 SQHQCIVGWPL----GQQHRWLLKNEDGIIEAYDIPVRHEIADC------EAILAATLAG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            G+A +P ++V+D      L+ +++++ +    ++  +
Sbjct: 238 VGLAQVPIWLVEDYLKTGELISVLDELASDDTPIHLIW 275


>gi|167034564|ref|YP_001669795.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861052|gb|ABY99459.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 301

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 118/257 (45%), Gaps = 12/257 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  VA   SF  AA  L  S S+++R +  LE   G KL  R+A  +TLTE G +L
Sbjct: 8   EIQAFVSVAHKRSFVAAARALGRSPSAVTRAVQTLEDNAGSKLLNRNANAVTLTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +         EL   S    G +R A    LG+++L   L EF   +P + + +
Sbjct: 68  LPHAERLLDVQRDAADELAALSGSAQGWIRFAVPQLLGEHVLPQVLAEFSRCHPQVTLDV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D      D  +R   P QSS LI   L     H YA+P YL     P   ++L
Sbjct: 128 QCSDEALDPLQGKFDFVVRGAFP-QSSELIGYPLWPYQRHLYASPAYLALAGTPQHPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H LI      P+ ++ +++      T  RP   PR   L++ S  ++    + G+GIA
Sbjct: 187 EGHTLILH--TAPRILKAWHFCRDGQITSLRP--RPR---LRLGSGHAVYHSTLAGAGIA 239

Query: 243 LLPDYIVKDNPNLVRIM 259
            L  ++ +   N+ R++
Sbjct: 240 RLAAWVGEAQVNVGRLV 256


>gi|120611202|ref|YP_970880.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120589666|gb|ABM33106.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 340

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 1/168 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  +  SGS + AA QL  +Q ++SR++  LE  +G++L  R   G+ LTE G +  
Sbjct: 17  LQTFVRIVDSGSLSAAARQLGTTQPTVSRRLQALERGMGLRLLQRSTHGMKLTEDGERCF 76

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +  + +L+ +   P G LR+      GQ+ L   L  FL  YP++ ++ +
Sbjct: 77  AHARELLAQWQAMESDLRGAHDTPRGLLRVQAPHAFGQDQLIAPLAAFLRRYPEVSVEWL 136

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           L ++  D   +  DCAI++  P++  S++   +  +     A+P  L+
Sbjct: 137 LHDRQPDFIAEGIDCAIQV-GPVRDPSVVATHVAEVPRIVVASPGLLE 183


>gi|169632451|ref|YP_001706187.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169151243|emb|CAO99929.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii]
          Length = 298

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 1/184 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F V      F+ AA++L+L +S+IS++++ LE ++G+ L YR +R   L+E G   ++ 
Sbjct: 12  LFVVAVEHQGFSAAAKRLNLPKSTISKRVAILEKKLGLTLIYRSSRSFVLSEAGKLFYQH 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 +    +  L     +PSG +R++ ++ + Q LL   L E    YP + +Q+ + 
Sbjct: 72  AKNAVDEFRYAEENLLIQQQEPSGVVRLSASVPIAQYLLSDCLPELAERYPKLLLQVEVT 131

Query: 130 NKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D+  +  D  IR   +P+  S LIQR L    + A AAP YL       + ++L K
Sbjct: 132 DRYVDVMSENFDIVIRSHFQPLPDSGLIQRVLKNDKIIAVAAPTYLMKSSPIHTPEDLLK 191

Query: 189 HNLI 192
           H  I
Sbjct: 192 HEGI 195


>gi|241662991|ref|YP_002981351.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240865018|gb|ACS62679.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 314

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 8/240 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F  V R  S T AA+ L L+QS++SRQ+S LE  +G+KL  R  R +  T +G +
Sbjct: 12  DLLRGFVAVGRRMSITLAADDLCLTQSAVSRQVSALEEALGVKLLVRGHRSIAFTPEGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R       +L+     ++ ++ +    + I  +I +    L   L  F L YPDI ++
Sbjct: 72  LFRSADSAVQQLQDAIGAIRVAAER--RPVTITASIGVTGLWLLPRLARFQLQYPDIDVR 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +N+ +D+  +  + AIR   P  +     R L    +   A P      R   S + 
Sbjct: 130 VATNNRLVDLKNEGIELAIRYCPPGDAPPGAIR-LFGETVAPVAHPSL--GLRSLDSAEA 186

Query: 186 LDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L    L+ F   DL    ++  +WLA       +PR + L+ N +  I+   V G GIAL
Sbjct: 187 LAGLTLLDFDDRDLRRPWLQWTDWLAAAGWSHAKPR-TVLRFNQHDQIIHAAVAGQGIAL 245


>gi|311106305|ref|YP_003979158.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760994|gb|ADP16443.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           94 [Achromobacter xylosoxidans A8]
          Length = 301

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 124/295 (42%), Gaps = 17/295 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F        F  A   L + +S +SR+++ LE  +G++L  R  R   +T+ G
Sbjct: 3   DLNDLFYFVQTVEHQGFAPAGRALGMPKSRLSRRLALLEERLGVRLIQRSTRHFMVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  Q  +  + V+P G +++   I L    + G L +F+L YP + 
Sbjct: 63  QTYYERCKAMLAEAEAAQEVIDAAQVEPRGVIKLTCPIALLHTHVGGMLADFMLKYPRVV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           IQL   N+ +D+  +  D AIR+R  P++ S L+ R L        A+P     C +P +
Sbjct: 123 IQLEATNRRVDVLGEAVDVAIRVRPPPLEDSDLVMRVLADRGQSLVASPALAAECGQPAT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDF----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             +L     +  G        D        ATV      PR+        +++    + G
Sbjct: 183 PDDLGAWPSLALGSPNQAYRLDLYKQDGQQATVSL---APRMIT---TDMIALRNAAMAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  LP  +V++      LVR++ D       ++  +P      G L + R  +
Sbjct: 237 VGVVQLPTLMVREQLQAGQLVRVLPDWAPRRELIHAVFP---SRRGLLSSVRALV 288


>gi|206563834|ref|YP_002234597.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039874|emb|CAR55849.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 300

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 117/283 (41%), Gaps = 6/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  TE 
Sbjct: 5   LNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTEA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              L      +       +           G +RI+ +  +   +L   L +    +P +
Sbjct: 65  ALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPMLAQLRRDHPGL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+  ++  D+    AD A+R+  P Q  +L+ R++  I +  YA   YL +   P +
Sbjct: 125 VIELVPTDRVQDVLKREADIAVRMAPPAQ-DALVARRVGAIEVGLYARDDYLAHHGAPAT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  H LI F  + P     F   A    P+ +     L+ +S L+ +     G GI 
Sbjct: 184 TDALAHHALIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
                + K +  LVR++ +        +    E L+ + + +A
Sbjct: 239 FCQTALAKRDARLVRVLPNGPAIRLETWVVMHEDLRASPRCRA 281


>gi|209549261|ref|YP_002281178.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535017|gb|ACI54952.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 299

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 119/294 (40%), Gaps = 18/294 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  LR F + A   +F   A +L ++ ++++R I+ LE E+G++LF R  R ++LT  G
Sbjct: 3   DYKALRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEAELGVQLFVRTTRQVSLTTDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +            LE  + E+  +     G+LRI+     G+ +L   L  F   YP + 
Sbjct: 63  AIFAAQIQPAVKTLEEARREVMNAHKSEEGRLRISAPTWFGKTVLPPILSGFKERYPKMS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            ++ L +  +DI     D AIR+         I RK+  +     AAP            
Sbjct: 123 FEISLSDGLVDIVDGDYDLAIRISSQPSDKFTIWRKIRVVPRILVAAPGS--------RF 174

Query: 184 QELDKHNLITFGDLIPKCMEDF--NWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             ++  N +T  D +    E    NW+         I   R      NS   +      G
Sbjct: 175 ATMEHPNELTPDDCLAYSGESRRENWVLSDGGSSMTISAGR--AFSANSGEVLADMAADG 232

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +G+ALLP + + D   +  L+ +      P   +   YP       ++ +F  F
Sbjct: 233 AGVALLPGFNIADHIRSGRLIHVFHGWAPPDLWLTLFYPPYQALPPRIASFSKF 286


>gi|167828298|ref|ZP_02459769.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
          Length = 302

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+ G 
Sbjct: 4   FQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   LE  +   + ++  P G LR+     L +  +   L +FL  YP I++
Sbjct: 64  AYYRRCVRLIADLEEAEGAFRAAA--PRGLLRVNLQGTLARYFVVPALPDFLARYPGIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP  + 
Sbjct: 122 HIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  + +  +     +      TVD  + E R+ + + V          V G GI  
Sbjct: 181 ALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQ 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++
Sbjct: 239 VPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWL 288


>gi|107100581|ref|ZP_01364499.1| hypothetical protein PaerPA_01001606 [Pseudomonas aeruginosa PACS2]
          Length = 303

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  + R  SF H+A++L +S S++S  +  LE  +G+KL  R +R +  T+ GS L 
Sbjct: 12  LNVFMTIVRRRSFRHSAQELGVSTSALSHSMRNLEARLGVKLLNRTSRSVVPTDAGSALA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               + +  +     EL      P G+LR+    D  + LL   L+ F   YPD+Q++L 
Sbjct: 72  AKLEDGFQLIGEALGELDAYRTSPVGRLRLNVPRDASRLLLGPVLRRFTEAYPDLQLELS 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +DI  D  D  IR    +    +       +     A+P YL     P    +L 
Sbjct: 132 VEDRMVDIVADGYDAGIRYGGTVPQDMVAVPLTGELRWVVAASPDYLARHGVPQRPDDLL 191

Query: 188 KHNLI 192
           +H  I
Sbjct: 192 RHACI 196


>gi|71282259|ref|YP_270635.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147999|gb|AAZ28472.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 323

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  +  +GS T  A Q++L+ +++S  +  LE ++ ++L  R  R L +T QG +  
Sbjct: 32  LNLFIRIVETGSITETANQVNLTPAAVSSALKRLEKQLDVQLLIRTTRQLRITPQGEQFL 91

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE  +I   ++  K SGKLR++ + DLG+N L   ++E L  +P + I L 
Sbjct: 92  FHCRNALASLEQGRISAHQTQGKVSGKLRLSVSSDLGRNTLLPWIEELLEEHPLLSIDLT 151

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D  +D  D A+R  KP + SS++  ++ T+     A+P Y+     P + ++L 
Sbjct: 152 VGDSVSDFYLDQVDMALRFGKP-EDSSMVSFQIATMSRITCASPAYISKYGNPETPEDLR 210

Query: 188 KHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI--- 241
            HN +     G L     E  + L T    +   RIS    N    + ++ V G GI   
Sbjct: 211 NHNCLLHRRAGRLFDH-WEYTDSLGTYKIKVNSNRIS----NDTDIVRRWAVSGKGIVYR 265

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +L+  Y   ++  LV+++    + S  ++   P   + +  + AFR  +
Sbjct: 266 SLIDVYSDLNSGQLVQLLSGYDSSSVELHLICPNREQVSPAVIAFRELL 314


>gi|114046762|ref|YP_737312.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|117919635|ref|YP_868827.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|113888204|gb|ABI42255.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
 gi|117611967|gb|ABK47421.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 313

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 133/290 (45%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGHL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++Q
Sbjct: 66  LYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMAKHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLVASPDYIAKHGEPSRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  L
Sbjct: 185 LVDHNCLVYQG---EWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVYL 241

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV ++ D  +T    +   YP       K+ AF  FI
Sbjct: 242 ASYLMEDEIAKGTLVPLLRDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFI 291


>gi|306843954|ref|ZP_07476549.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306275709|gb|EFM57433.1| LysR family transcriptional regulator [Brucella sp. BO1]
          Length = 310

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 128/300 (42%), Gaps = 24/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VAR  SF+ AA++L L+Q ++SRQI+ LE ++G  LF R +R + L+E G  
Sbjct: 13  SALAAFDAVARHESFSAAADELSLTQGAVSRQIASLEEQLGAALFDRTSRNVVLSEAGRV 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        +      LQ  S      L +A     G   L   +  F+  YP I + 
Sbjct: 73  YLQAIGPALASIRAA--SLQVMSQMRGTTLNLAFLPTFGTRWLIPRIPRFVAQYPHIILN 130

Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKN--CRE 179
                   D   +  D AI + +P     + + L+   +  +      +P +LK+     
Sbjct: 131 FATRIGQFDFDREGLDAAIHIGQPDWPNAECTFLMDETVAPV-----CSPAFLKDHPVTS 185

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  +  L   N+ +     P   E  +W  ++   I  P    ++   + ++ Q CV G 
Sbjct: 186 PHDLLRLPLFNMAS----RPGAWE--HWFRSLG--ITTPVPGGMRFEQFSNVSQACVAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L+P ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 238 GMGLMPLFLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPTVTAFRDWLLAEVRN 297


>gi|71278424|ref|YP_270599.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144164|gb|AAZ24637.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 299

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 135/285 (47%), Gaps = 13/285 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++V+  VA    F+ A+ +L++S  +++R ++ LE  + +KL  R  R + +TE G++  
Sbjct: 7   MKVYIAVAEEQGFSAASRRLNMSAPTVTRAVAHLEETLKVKLLNRTTRYVRMTEAGARYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H ++         +  P GK+ +   +  GQ  +   + ++L+ YP  Q+  +
Sbjct: 67  EDAKRILHDVKVANEAALGINATPQGKISVTAPVLFGQQFVLPTITDYLVRYPQTQVNAV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D  IR+ + +  SS+  +K+  + +   A+P YL     P + QEL 
Sbjct: 127 FLDRVVNLLEEGHDVGIRIGE-LHDSSMRAKKVGNVRLILVASPEYLAKNGIPKNCQELA 185

Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           +H LI    G L P      +W   V++     +I+  L V +  + +     G GI  +
Sbjct: 186 QHTLIAANTGSLNP------DWQFLVNKKNQTIKINPRLTVTTNQAAINAAKNGLGITRI 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             Y V +   N  L  ++E+   P+  +   + E   ++ K+++F
Sbjct: 240 ISYQVAEELKNNKLKILLENFEYPAKPINIVHREDKFSSAKVRSF 284


>gi|94312377|ref|YP_585587.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356229|gb|ABF10318.1| transcriptional regulator, LysR-family [Cupriavidus metallidurans
           CH34]
          Length = 331

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 7/199 (3%)

Query: 2   SFDW---DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           +F W   DKL+    F  V   GS   AA   +++   I R+I+ LE  +G+KL +R  R
Sbjct: 23  TFSWAGMDKLKQIEAFIAVVEHGSMAAAALTQNVTPVMIGRRINALEARIGVKLLHRSTR 82

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + +TEQG+       +    L+  ++ + E   K +G L ++     G+  +  +   F
Sbjct: 83  RIVVTEQGAAFMEQCKKALADLDRAEMLIAEGKHKATGHLIVSAPAAFGRKHVAPHAPAF 142

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           L   P++QI   L ++ +D+  +  D  IR+   I   + +  KL T        P Y  
Sbjct: 143 LAANPEVQISFNLTDRVVDLVREGYDVGIRIGGAI-DPNFVAIKLATNKRVVCGTPAYFA 201

Query: 176 NCREPLSIQELDKHNLITF 194
               P ++++L+KHN + F
Sbjct: 202 RHGVPHTLEDLEKHNCLAF 220


>gi|270261804|ref|ZP_06190076.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043680|gb|EFA16772.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 291

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 1/170 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F +VA +     A+    +S++++SR+I+ LE ++G++L  R ARGL LTE G  
Sbjct: 4   NALSDFILVATNEGLGKASRASGISKATLSRRIADLEDQLGVRLIERSARGLKLTEAGEM 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   T  +  ++      + +    P G+LR+A  +   Q  +     EF   YP+I+I+
Sbjct: 64  LMSRTEGLLSEVTEAITAVGDGVSTPRGRLRVAAPVLFSQLSMGRIGAEFCAAYPEIEIE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           ++ +++ +D+  +  D AIR+  P   S+L+ R      +   AAP  LK
Sbjct: 124 IVAEDRMVDLVEEQFDVAIRI-NPSPDSNLVGRCFAKDRLVVVAAPGILK 172


>gi|299530450|ref|ZP_07043871.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298721590|gb|EFI62526.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 318

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 135/285 (47%), Gaps = 26/285 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F  VA+ GSF+ AA    +S S++S+ ++ LET +G++L  R  R L LT +G +L
Sbjct: 14  ELQTFVQVAQQGSFSAAARLREVSPSAVSKIVARLETRLGVQLLRRSTRRLELTAEGEQL 73

Query: 67  HRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                E   +L T  + L ESSV    +P+G +RI  +   G  LL   +   +  +P +
Sbjct: 74  ----LEQGRQLLTDWLAL-ESSVTRQGQPTGVVRINASSSTGNRLLVPLVGLLMRTWPGL 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L   +  +D+    AD A+R  + + SS ++ RKL        A+P YL+    P  
Sbjct: 129 QLDLSFTDHVVDLIAARADIALRWGE-LPSSDMVARKLGHTRQVIVASPDYLQRFGRPQH 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             EL  H  +  G   P+ +  + ++     V   +GE     L+VN   ++      G+
Sbjct: 188 PDELAGH--VRIGWNYPRAIPHWPFVVAGKAVTVSMGE----VLRVNDGEAMANLAKAGA 241

Query: 240 GIALLPDYIVKDNPNLVR---IMEDV----ITPSFTVYFCYPEAL 277
           G+A L  Y   ++ +  R   ++ED     + P   VY   P  L
Sbjct: 242 GLARLSLYHAWEDLHAGRLQVLLEDFNPGDLQPIHAVYVGKPGQL 286


>gi|293602844|ref|ZP_06685283.1| glycine cleavage system transcriptional activator [Achromobacter
           piechaudii ATCC 43553]
 gi|292818638|gb|EFF77680.1| glycine cleavage system transcriptional activator [Achromobacter
           piechaudii ATCC 43553]
          Length = 349

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 128/295 (43%), Gaps = 16/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF+ AA++L ++QS+IS  I  LE E+G+ LF R  R + LT +G    
Sbjct: 54  LRAFEAAARRLSFSLAAQELFVTQSAISHHIQRLERELGVALFERRTRAVALTPEGLAYF 113

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +     +  L     +L+ +S  P   L++          L   L  F   +P+I +QL+
Sbjct: 114 QHVHPAFELLRQGTDQLR-ASAAPRVTLKVGLLASFATRWLAPRLPAFAAAHPEIDLQLL 172

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D++    D AIR  +      +  R L+T H+    AP  +   + P +  +L 
Sbjct: 173 PDIGLADVAGGDVDVAIRYGR-GSWPGVASRLLMTEHLSVVGAPGLVSGRKRPRTPDDLL 231

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H L+T         + F W A   R  G    R   + ++ Y  +++  + G G+A+  
Sbjct: 232 RHPLLTS-----HARQPFEWDAWA-RQFGMDLGRAQNVHLHDYNIVVEAALAGQGLAMGR 285

Query: 246 DYIVKD---NPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             ++     +  LV+ +   +   P    +F  P       +  A R+++   AR
Sbjct: 286 HRLIASHLASGALVQALPGAVLKDPRIGWWFVAPRGALPP-QAAALRDWLTEAAR 339


>gi|83716184|ref|YP_438445.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650009|gb|ABC34073.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 302

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 133/303 (43%), Gaps = 25/303 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE +  ++L  R  R  T+TE G
Sbjct: 8   DLNDLYYFVKVVEHGGFTQAGRALGVPKSTLSRRIAALEAQYDVRLLQRTTRHFTVTETG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E  +  ++    +P G + ++    L +  + G +  F+ ++P +Q
Sbjct: 68  REFYDRCLGVLVEAEAAREVIERKHAEPQGIVSLSCPTALLEYRVSGLVARFMAIHPKVQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAPH L     P S
Sbjct: 128 VHLEATNRRVDLLSEGIDLALRVRFPPLEDSGLVMRVLGDSPQRLVAAPHLLGGRDLPTS 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235
             EL     + +G   P+     + L  +  P G        PR      +   ++    
Sbjct: 188 PDELAGVPSVDWGP--PR-----HHLWQLVGPQGVEAQLRHHPRFIT---DDMHALRDAA 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291
           + G GIA LP  +V+D   +  LV ++   +     ++  +P      G L   R  I F
Sbjct: 238 LHGVGIAQLPCMVVEDDLRDGTLVDVLPGWVPKGGVIHAVFP---SRRGLLPRVRLLIDF 294

Query: 292 LKA 294
           L A
Sbjct: 295 LAA 297


>gi|300691067|ref|YP_003752062.1| transcriptional regulator, lysR family [Ralstonia solanacearum
           PSI07]
 gi|299078127|emb|CBJ50770.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 322

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 1/187 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+   +A +G+ + AA QL    ++ S  +  +E+E+G +LF R  R +  TE G +
Sbjct: 5   DDLRLLVRIADAGNLSAAARQLGWLPATASAALKRVESELGARLFERTTRSMRPTEAGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    L+     L +   + +G +RIA T DLG+NLL+  L  F   +P +++ 
Sbjct: 65  YLGYARQALEALDEGAESLGQDRTELAGPIRIAATSDLGRNLLRPWLDTFCDEHPGVRVT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++  D+  +  D A+R    +Q S+L++R L +       AP Y +    P     
Sbjct: 125 LMLGDRLADLMREDLDFALRYGH-LQDSALVRRPLASHPRVIVGAPSYFRRHSRPTHPDA 183

Query: 186 LDKHNLI 192
           L  H  +
Sbjct: 184 LRDHRCL 190


>gi|299770523|ref|YP_003732549.1| transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700611|gb|ADI91176.1| transcriptional regulator [Acinetobacter sp. DR1]
          Length = 296

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT  G K
Sbjct: 5   DCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLTRTTRQMNLTSCGEK 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP I+I 
Sbjct: 65  FYQHSKVILSEFEWAAYEISYNQQYPEGELKLNTPMSFSNIFLQNIISDFIEKYPSIKID 124

Query: 126 LILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L + ++ +D++ +  D  IR+    P  ++S I   L T   + YA P Y      P S+
Sbjct: 125 LFMTDQLLDMNNNKFDLTIRVDGSPPNLANSKI---LNTYQRYLYATPEYFNQHGLPASL 181

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGS 239
           +EL  H  LI + D   K +          +   E   +C  V   N+   ++  C+   
Sbjct: 182 EELKDHKFLIYYQDSRHKKL-------IFQKDQKEVSFNCFPVMTCNNGELLLDMCLKDH 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+
Sbjct: 235 GIVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFL 288


>gi|221197255|ref|ZP_03570302.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203927|ref|ZP_03576945.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176093|gb|EEE08522.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183809|gb|EEE16209.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 317

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 134/301 (44%), Gaps = 36/301 (11%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L VF  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+ G
Sbjct: 8   NLNRLAVFVAVVEAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    ET    +   +    G LR++  +D G  ++   +      +P + 
Sbjct: 68  RAFYDACRDIVQAAETALDAVSSDAGPLRGTLRVSVPVDYGAQVVAPAVVALRDAHPSLD 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREP 180
           ++LI +++ +D+  +  D A+R+ + +  S+    +L T      A+P ++      R+P
Sbjct: 128 VELIANDRVVDLVAENLDVAVRIGR-LADSNYRAVQLGTYEKWLVASPAFVARYGLPRDP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP---------IGEPRISC---LQVNSY 228
            ++  L                  F  L+T+ RP          G+  + C   +  N+ 
Sbjct: 187 AALAAL-----------------PFVMLSTLARPHTLELESARGGKASVRCSASVVSNTA 229

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            +     + G G  LL D+ + D+    +LVR++         ++  YP     + K++A
Sbjct: 230 TACRAIALAGGGFGLLTDFSIADDVAAGSLVRLLPAWRAAPAGIHAVYPSTRLPSPKVRA 289

Query: 286 F 286
           F
Sbjct: 290 F 290


>gi|167849749|ref|ZP_02475257.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
          Length = 308

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+ G 
Sbjct: 4   FQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   LE  +   + ++  P G LR+     L +  +   L +FL  YP I++
Sbjct: 64  AYYRRCVRLIADLEEAEGAFRAAA--PRGLLRVNLQGTLARYFVVPALPDFLARYPGIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP  + 
Sbjct: 122 HIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  + +  +     +      TVD  + E R+ + + V          V G GI  
Sbjct: 181 ALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQ 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++
Sbjct: 239 VPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWL 288


>gi|241205475|ref|YP_002976571.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859365|gb|ACS57032.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 307

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V  +GSF+ AA  L ++Q ++SRQ++ LE     +L +R   GL+LT +G ++ 
Sbjct: 7   LRTFQRVVETGSFSAAAHDLDVTQPAVSRQVAALEGHFNTRLLHRTTSGLSLTAEGERML 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   +   +E             SGK+R++    LG  L +  L + L  +P + ++LI
Sbjct: 67  PMALRILEAVEELGDAAGSDGTTASGKVRLSVPAPLGLYLSE-RLGDLLAAHPKLSVELI 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +  D+  +  D  +RL + +  SSL+ R++        A+P YL     P + +E+ 
Sbjct: 126 FREQGSDMIEERLDLEVRLGQ-VADSSLVCRRIGWTTAFLVASPAYLARRAAPRAPKEIK 184

Query: 188 KHNLITF 194
            H  + +
Sbjct: 185 DHECLCY 191


>gi|119476794|ref|ZP_01617104.1| Transcriptional regulator [marine gamma proteobacterium HTCC2143]
 gi|119450050|gb|EAW31286.1| Transcriptional regulator [marine gamma proteobacterium HTCC2143]
          Length = 305

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 142/296 (47%), Gaps = 15/296 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L +F  + R GS + AA+ L +S+SS+S+Q++ LE E+G +LF R  R + LTE G
Sbjct: 7   DMQGLVLFSHINRLGSLSAAAQLLGISRSSVSKQLAALEREIGSRLFNRTTRKIVLTEVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++ +   +V   L+T     ++     +G L +      G+  L   + +FL  YP+I 
Sbjct: 67  RRVLQEAHKVELALQTVNHISEDFQSVIAGDLNVTCASAQGRMHLVPLITKFLARYPEIN 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L+++ +D+  +  D +IR+   +  S+LI RKL  +     A+P YL N     + 
Sbjct: 127 VNLQLEDRVVDMIAENLDISIRIGY-LPDSTLIARKLGDLSGVLCASPEYLSNAPPLQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
            +L  H  + + +     +   +W    D   GE  ++    L +N   +++   +  +G
Sbjct: 186 ADLLHHRCLFYRN---AKLGMNSWSFISDE--GEESVTVSGPLSINDPGALISAALAHAG 240

Query: 241 IALLPDYIVKDNPNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAFRNFIF 291
           + L+   ++ D     R++  V+T      +  +Y  YPE      K +A  +F+ 
Sbjct: 241 VLLIDKGLLGDTMQDGRLIP-VLTSYQSIGTLPMYIVYPEREFIPAKTRALVDFLL 295


>gi|120608930|ref|YP_968608.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120587394|gb|ABM30834.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 318

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 127/279 (45%), Gaps = 13/279 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  VA   SFT AAE L + ++S S  +  LET++G +L +R  R + LT+ G 
Sbjct: 4   FDRMHTFVRVAELASFTQAAEALGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESS------VKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
             +    ++   ++  Q   Q +           G++RI  +  + +N++   L E L  
Sbjct: 64  AYYERCKDLLADVDELQSMFQHADGEGAGGGGLRGRVRIDMSTGMARNVVVPRLPELLAR 123

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +  ++++L    + +D+  +  DC +R    +  +SL+ R L    +   A+P YL+   
Sbjct: 124 HSGLEVELSSTERRVDVVREGFDCVLRT-GAVVDASLVARPLGPARLVNCASPAYLRAHG 182

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVL 237
            P ++++L  H L+ F + +      F   A VD  +   P    L VN+  + +  C+ 
Sbjct: 183 TPQTLEDLGDHRLVHFVNTLGARSGGFE--AMVDGTLAAIPMQGALTVNNAEAYIAGCLA 240

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           G GI  +P   V D      LV ++     P   +   Y
Sbjct: 241 GLGIIQVPRLGVVDLLAQGALVEVLPQHAAPPMPLTLMY 279


>gi|254253367|ref|ZP_04946685.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124895976|gb|EAY69856.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 305

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 121/293 (41%), Gaps = 19/293 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G  
Sbjct: 10  NALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGRD 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + ++      +  S    SG L ++ T       L   L +F    PDI +Q
Sbjct: 70  YLPPVRNAFRQIADASQRV--SGAADSGVLTVSVTPFFASAWLVPRLGQFRHACPDIDLQ 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  +   D + D  D AIR     +   L    L+T+ + A A+P  +     P +   
Sbjct: 128 IVASHALADFARDGVDVAIR-HGLGRYVGLCSEHLLTVEIVALASPDLVARLGMPRT--- 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               +L+++  L     E   W    D       G PR       S L  +Q  V G G 
Sbjct: 184 --PADLVSWPHL--HDAERKGWHVWFDAQRIDDFGPPRGPAFDDASLL--LQAIVAGQGA 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LLP  +V+    +  LV++ +      F  Y  YP       K+ AFR +I 
Sbjct: 238 GLLPAAMVRGELADGRLVQLADVARLDDFAYYLVYPPHHAERNKVAAFREWIL 290


>gi|330818430|ref|YP_004362135.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327370823|gb|AEA62179.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 358

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 133/301 (44%), Gaps = 20/301 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SF+ AA++L ++  +IS Q+  LE E+G+ LF RH + L LTE G +
Sbjct: 10  NALRAFEAAARHESFSRAADELFVTHGAISHQVRALEEELGVPLFVRHGKRLALTESGER 69

Query: 66  LHR-VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             R V + +   L+ TQ      +     +L +++        +   +  F+  +PDI +
Sbjct: 70  YARQVRAALTILLDATQ---DVRAADRGNRLVVSSLQSFAARWITPRIGSFIDRHPDIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N   D S D  D AIR         L   KL         AP  L     P    
Sbjct: 127 ELQSTNSLTDFSRDDVDIAIRFGN-GHYPGLHVEKLFDEMFFPACAP-TLNGGVLPREPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 185 DLARYPLLRSDDELWRPWFDAAGLET----LSEPKRGLLFQDSS-QLVQAAIDGQGIALV 239

Query: 245 PDYIVK---DNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----ARD 296
              +     D   +VR+ + D  +P    + C P  L    +++AFR ++  +     R+
Sbjct: 240 RRSLAAAELDAGRIVRLFDIDGPSPWHCYFVCLPSRLAAP-RVQAFRTWLLAELAHFERE 298

Query: 297 W 297
           W
Sbjct: 299 W 299


>gi|222086740|ref|YP_002545274.1| transcriptional regulator protein (activator) [Agrobacterium
           radiobacter K84]
 gi|221724188|gb|ACM27344.1| transcriptional regulator protein (activator) [Agrobacterium
           radiobacter K84]
          Length = 291

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 132/305 (43%), Gaps = 38/305 (12%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR GSFT A  +L ++Q++IS Q+  LE  +GI LF R  RGL LT++G  
Sbjct: 9   NALRVFEASARHGSFTRAGMELRVTQTAISHQVKALEEVLGITLFKRLPRGLALTDEGHA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V ++ + ++  T  +L+E +      + +  T  +G   L   L  F   +P + ++
Sbjct: 69  LLPVLTDAFRRMSATLSQLEEGNFDEILTVGVVGTFAIGW--LLPRLTSFKTQHPHVDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N   D+ +D  D  +R                    H   A H +     P+    
Sbjct: 127 LKTNNNRADMVLDGLDFFLRFGDGA--------------WHGTEAIHLMDAPLSPVCTPA 172

Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT--VD------RPIGE--PRISCLQVNSYLSIMQYC 235
           L +      G   P  + + + L +  +D      R  G   P +     +S L++++  
Sbjct: 173 LSE------GLHTPADLANLDLLRSYRIDEWPLWFRAAGAAPPNLRGWMFDSSLTLVEAA 226

Query: 236 VLGSGIALLPDYIVKDNPNLVRIME----DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G G AL+P  +  +     RI++     V+T S+  +    ++   T  +K FR ++ 
Sbjct: 227 ARGVGAALVPVAMFSEEIEAGRIIQPFPITVLTGSY--WLTRLKSRAETASMKTFRQWLM 284

Query: 292 LKARD 296
            +  D
Sbjct: 285 AEMED 289


>gi|209518886|ref|ZP_03267698.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209500688|gb|EEA00732.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 302

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 3/193 (1%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR    F  V  +GSF  A E+L +++S+I++ ++ LE  +G++L  R  R L+LT++
Sbjct: 3   DRLRGVAEFVDVVDAGSFAAAGERLGVTRSAIAKIVARLEQRLGVRLLQRTTRHLSLTDE 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     V  +L   +  L+     PSG+LRI   +  G+  +   + + +  +P +
Sbjct: 63  GHAYYEQCRRVMAELGAAEAALEAGRRDPSGRLRITAPVLFGRQCVAPVMLKLVERHPLL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++   ++  D+  D  D A+R+  P   ++L+ R+L    M   A+P +L     P  
Sbjct: 123 DVEMSFSDRVSDLIEDGFDIAVRIGAPPDHATLVGRRLGVQRMGICASPAWLDRHGRPSG 182

Query: 183 IQELDKHNLITFG 195
           + EL  H  I +G
Sbjct: 183 LAELGSHVGIAYG 195


>gi|197286051|ref|YP_002151923.1| LysR family transcriptional regulator [Proteus mirabilis HI4320]
 gi|194683538|emb|CAR44386.1| LysR-family transcriptional regulator [Proteus mirabilis HI4320]
          Length = 301

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 129/279 (46%), Gaps = 8/279 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  F  V   G F+ AAE L + +S +SR+I+ LE  + + L YR  R   +T
Sbjct: 1   MKYDLNDLYYFVKVVEFGGFSQAAETLGIPKSKLSRRIADLEERLKVSLIYRSTRQFHVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   ++    V  + E  Q  +  +   P G ++++  + L Q  +Q  L +F+  YP
Sbjct: 61  KIGQTFYQQCKNVVEQAEIAQEVICSAQGHPHGTIKLSCPVALLQIYIQDILVDFMAKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI IQ++  N+ +D+  +  D A+R+R  P+  S L  + L        A P        
Sbjct: 121 DINIQILAINRPVDVISEGLDLALRVRALPLDDSGLTMKILGYSRRVLVANPLLFATNSA 180

Query: 180 PLSIQELDKHNLITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P S ++L  + ++   +   +  +   +   TV      P+++   V   +++ +  + G
Sbjct: 181 PDSPEQLADYPILANSEHSQQYTLTLTHNDGTVSTQHVTPKLATTDV---MTLYKATLKG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI  LP  +V+    + +LV ++     P   ++  YP
Sbjct: 238 LGITRLPLSVVEKELADGSLVEVLPQWRFPKDVIHAVYP 276


>gi|209550098|ref|YP_002282015.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535854|gb|ACI55789.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 308

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V  +GSF+ AA  L ++Q ++SRQ++ LE     +L +R   GL+LT +G ++ 
Sbjct: 7   LRTFQRVVETGSFSAAAHDLDVTQPAVSRQVAALEGHFNTRLLHRTTSGLSLTAEGERML 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   +   +E          V  SGK+R++    LG  L +  L + L  +P + ++L+
Sbjct: 67  PMALRILEAVEELGDATGSDGVMASGKVRLSVPAPLGLYLSE-QLGDLLAAHPKLSVELL 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +  D+  +  D  +RL   +  SSL+ R++        A+P YL     P + +++ 
Sbjct: 126 FREQSSDMIEERLDLEVRLGS-VADSSLVCRRIGWTTAFLGASPAYLARKAPPRTPKDIK 184

Query: 188 KHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            H  + +          F N    +   I  PR+   S + ++          + S I  
Sbjct: 185 DHECLCYNRAGDAATWSFSNGSEDISVRI-SPRLTACSAVAIHRAALAGAGLAVLSHIIA 243

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +PD I      L+ +MED       +   YP       ++K   +F+
Sbjct: 244 VPDIIAG---RLIPVMEDFQPSRLPITVVYPSRRNMPLRVKTVLDFL 287


>gi|330961366|gb|EGH61626.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 302

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 130/291 (44%), Gaps = 13/291 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AA +L L+Q +I RQI GLE  +G++LF R  RG+ LTE G    R  
Sbjct: 14  FEAAARHESFTKAANELSLTQGAICRQIGGLEEYLGVELFRRSRRGVKLTEAGLSYSRRV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           +     +E   + +     + +  + +A     G   L   LK+F + +PD+ + L    
Sbjct: 74  AMQLDAVERDTLSIM--GQQGANAIELAVVPTFGTQWLLPRLKDFQVKHPDVTVHLTNRT 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +    +  + D AI       S +   R L+  +     +P +LK  R+ L+  EL +  
Sbjct: 132 RPFLFADTHFDAAIYFGDADWSGTEAHR-LMGENPMPVCSPAFLKG-RDSLTADELAELP 189

Query: 191 LITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           L+          + FN  +  V R +  PR     +     + Q  +   G+AL+P +++
Sbjct: 190 LLQQTTRPYAWRQWFNAQSLDVPRDMTGPRYELFSM-----LAQAAMHEMGVALIPPFLI 244

Query: 250 KDNPNLVRIM--EDVITPSFTVY-FCYPEALKNTGKLKAFRNFIFLKARDW 297
           +   +  R+M       PS   Y    PE    +  L AFR+++  +ARD+
Sbjct: 245 QRELHEKRLMIANARPLPSNKAYHLMIPERKVESASLTAFRDWLVDQARDY 295


>gi|269103119|ref|ZP_06155816.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163017|gb|EEZ41513.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 312

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 2/190 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   +R GSF+  A  + ++ +++S  I  LE +VG  LF R  R L LT +G  
Sbjct: 5   NDLQVFIEASRMGSFSKVANSMGITPAAVSAAIKRLEEQVGFPLFIRSTRHLRLTNEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S   + L+    ++       SGKL I    D G+NLL   + EF  +YPDI I+
Sbjct: 65  FCDKASMAVNILQDGLDQIANDRNAFSGKLHITAPSDFGRNLLLTWIAEFQEIYPDITIK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQ 184
           L L +K  DI     D AIR  +P   S+L+   L  ++     A P Y+          
Sbjct: 125 LELSDKVADIYSQPVDIAIRYGQP-ADSNLVAISLCQLNEGITCATPEYIAANPTITEPM 183

Query: 185 ELDKHNLITF 194
           +L  HN + F
Sbjct: 184 DLLAHNCLCF 193


>gi|228939566|ref|ZP_04102152.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972418|ref|ZP_04133028.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228787293|gb|EEM35262.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820109|gb|EEM66148.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326940112|gb|AEA16008.1| LysR family transcriptional regulator [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 300

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 133/286 (46%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L T  +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISIPLYTSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    + FN+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP    D++   N   ++I     TP   +   Y
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPIIEIGLIY 274


>gi|254502867|ref|ZP_05115018.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438938|gb|EEE45617.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 302

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 136/307 (44%), Gaps = 31/307 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F + A   + + A + L L+ S  S +++ LE  +G  L +R  R ++L+++
Sbjct: 1   MDTECLRLFVLAAEKSNISAAGKVLGLAPSIASARLAKLERSLGSDLLHRSTRKVSLSQE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++      E+  + +  +  L     + +G LR        Q  +   L EF+  +P I
Sbjct: 61  GAEFLPYAREILAQEDAARAALGHGKPEATGTLRFTAPSTFAQLYIVPMLPEFMERHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L +   D+     D A+R    ++ +SL  RKL        A+P YL     P +
Sbjct: 121 RLDLRLSDVKYDLIDGSFDLALR-NSAMEDTSLKGRKLADDTRILCASPGYLAAHGVPKA 179

Query: 183 IQELDKHNLITFGDLIPKCM------------EDFNWLATVDRPIGEPRISC----LQVN 226
             EL +H LI F     K +               N   T+D  + +   +     +  N
Sbjct: 180 PDELQQHQLIGFAARTAKPLMSPTGPEGVFDTRGHNARLTMDNGLSQKLATLAGAGISAN 239

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           S  S+ Q   +G+ I +LPD+IV D+P++             ++  YP++   T K++ F
Sbjct: 240 SLWSVHQELKIGTLIRVLPDHIV-DDPSM-------------LWLIYPKSNVLTAKVRVF 285

Query: 287 RNFIFLK 293
            +F+  K
Sbjct: 286 IDFLLEK 292


>gi|188579508|ref|YP_001922953.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179343006|gb|ACB78418.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 346

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 114/259 (44%), Gaps = 30/259 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  LR+F  + R+GSF   A  L +S +S+ R+I  LE  + + LF R   G+  T  
Sbjct: 24  LDWHSLRLFLQLYRAGSFRACAASLEISVNSLRRRIEALEAALQLPLFIRTVDGIRPTTG 83

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKP--SGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           G   H + +    +    ++     SV     G++RIA T  LG   L   L EF   +P
Sbjct: 84  GE--HILAAAEAMEQAAFRVLRARGSVSNDIEGEVRIAVTEGLGTAWLTPRLVEFQNAFP 141

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L       D+    AD A++L +P  +   + R L  +H   +A+  Y      P
Sbjct: 142 NLRVALNCAMNSADVLRMEADIAVQLTRPDAADVKLVR-LGYLHTMPFASRAYAGRNGLP 200

Query: 181 LSIQELDKHNLI-----------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229
            ++ EL KH LI            FGD++P+    F +  TV           +  N+  
Sbjct: 201 TNVDELIKHRLILQIAEQTSQLSIFGDMLPR----FPYPPTVP----------ITTNTSS 246

Query: 230 SIMQYCVLGSGIALLPDYI 248
           ++      G+GI  LP Y+
Sbjct: 247 ALALAIANGAGIGWLPTYV 265


>gi|71277790|ref|YP_267519.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71143530|gb|AAZ24003.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 300

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 128/270 (47%), Gaps = 10/270 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V + GSFT AA  L  ++S+IS+ +S LE  +G++L  R  R L LT  G  +
Sbjct: 13  QMLVFDEVLKQGSFTEAAHSLGHTKSAISQYVSQLERALGVRLLNRSTRTLNLTPTGQLV 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            + + ++   L  T  E+QES++ P+G++ I        +L+   + E    YP +  +L
Sbjct: 73  AKRSEQLLELLTVTLDEIQESAIAPAGRIAITAPHAFEASLVTPIITELCDEYPKLTPEL 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +DI     D AI +  P + SS     +  +     A+P YL      ++ Q L
Sbjct: 133 TFTDERLDILKHQLDLAISV-GPQKDSSYHAILIGELESVLVASPKYLAK-HTGINEQNL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
              NLI    ++P    +F+     +  I    +  L++N+  S +   + G+GI L+P 
Sbjct: 191 SLQNLI----MLP-WQHNFSLTKNDNNAITFSSLKYLKMNTSTSAINSAITGAGICLIPS 245

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCY 273
             +K    +  L R++ D +     VY  +
Sbjct: 246 VFIKSELQSGALQRVLPDYLGEPRNVYAVH 275


>gi|89091863|ref|ZP_01164818.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
 gi|89083598|gb|EAR62815.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
          Length = 300

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 5/183 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R F  VA+ GSFT AAE+   S++S+S+Q+S LE  + ++L YR  R + LTE G 
Sbjct: 6   WSGIRSFLAVAKCGSFTLAAEETGTSKASLSQQVSQLEKTLNLQLLYRTTRSIRLTEVGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDL-GQNLLQGNLKEFLLLYPDIQ 123
              +       +L+  Q          SG +++ +   L G++++   L EF   YPDI 
Sbjct: 66  GYLQRCEAAVAQLDAAQEWAVAHKQIISGTIKMNSVGGLIGESVIAPLLIEFQKHYPDIC 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCREP 180
           ++L   ++ +D+  D  D  +R+   +  SSLI R+L  I     A+P ++   K  R P
Sbjct: 126 VELDFSSRRVDLLKDDYDLVLRMGD-LPDSSLIARRLHQIKTCYVASPEFIQRQKPIRHP 184

Query: 181 LSI 183
           L I
Sbjct: 185 LDI 187


>gi|257465253|ref|ZP_05629624.1| LysR family transcriptional regulator [Actinobacillus minor 202]
 gi|257450913|gb|EEV24956.1| LysR family transcriptional regulator [Actinobacillus minor 202]
          Length = 303

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 131/303 (43%), Gaps = 25/303 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F+ +    S + A+ +L +S   +S  +  LET +G+ L  R  R L LTE G 
Sbjct: 9   YHALTIFHTIVAEKSISAASRKLQVSPPVVSNALKSLETHLGLVLINRTTRSLELTEAGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L+  T  +   LE     +Q+    PSG +RI+        +++ +  EF   YP++ +
Sbjct: 69  RLYAKTQPLVQDLELEMESVQDLGETPSGTVRISVPRFAYHQIIRPHYAEFCRRYPEVLL 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  +D+  D  D  IR    +  S + ++ L  +    Y +P Y +    P ++ 
Sbjct: 129 EISVFDGTVDLLKDGFDLGIRFGDKLSDSIVARQLLPAMQDGLYISPSYAEQYGIPQTLD 188

Query: 185 ELDKHNL-----ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC---- 235
           +L  H L     IT   L+P  + D      ++ P+       L VN  + ++       
Sbjct: 189 DLKHHKLIGYRFITANRLLPLVLNDGGEQREIEMPV------SLIVNDEVDLLVDATRQG 242

Query: 236 -----VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                +  S +A+ P     D  + + ++E   T    VY  Y +  +   ++K   +F+
Sbjct: 243 LGIGRIFASTLAMQP-----DQAHFIPVLEPYWTSYPPVYLYYQQHSQKAKRVKVLIDFL 297

Query: 291 FLK 293
             K
Sbjct: 298 LEK 300


>gi|254189556|ref|ZP_04896066.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157937234|gb|EDO92904.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 309

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 130/298 (43%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 5   NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 64

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 65  NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 121 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYARRHAV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L   + I  G L       ++     +R +       L+V S L   Q  + G+
Sbjct: 180 PRHPDDLPGSHWIGHGGL---ANLSYSVFGNEERSVRIQTPGRLKVKSVLLAHQMALAGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 237 GISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 289


>gi|116695368|ref|YP_840944.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529867|emb|CAJ96214.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 604

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 121/271 (44%), Gaps = 13/271 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH-R 68
            F  V   G F+ AA++L +++S++SR I  LE +VG++L  R  R ++LT +G  LH R
Sbjct: 288 AFITVVAEGGFSKAADRLGITRSAVSRCIQKLEAQVGLRLLSRTTRSISLTREGEILHAR 347

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               V    E  +         P G+LR++ ++  G+ ++   L  F   YPDI+I+L L
Sbjct: 348 CQPSVALITEAMEDLRDLRDGPPRGRLRVSASVGFGRKVVAPLLWAFQEKYPDIEIELHL 407

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
                D + D  D +  L   +  S ++ +++V +     A+P Y      P S   L  
Sbjct: 408 GCVASDFTSDRIDVSF-LNGRLADSRIVAKRIVPMQTLVCASPAYAVRRGMPESPDALML 466

Query: 189 HNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           H+ I     +P     + W   V+   R +  P  S +  N    +++  + G GIA L 
Sbjct: 467 HDCINV--RLPSG-RVYEWEFKVEGGLRKLTPP--SRIMFNDDGLVLEAVLQGKGIAQLG 521

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            Y++ D      LV  M          Y CY
Sbjct: 522 GYLICDLLREGKLVHSMPQYAPDDQGHYICY 552


>gi|194363990|ref|YP_002026600.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194346794|gb|ACF49917.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 303

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 19/303 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F   A +GS   AA  L +S +++ + I+ LE  +G++L  R  R L L+E G+   
Sbjct: 7   IRSFTRTAETGSIAAAARILGISATAVGQNINRLEAHLGVRLLNRSTRQLALSEAGALYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L   Q  +    ++P+G LRIA++   G+++L   L      YP +Q++L 
Sbjct: 67  AQVRHIEADLARAQAMVTSGDIEPAGPLRIASSSAFGRHVLAPLLPSLQQRYPQLQLELR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +    +  D +IR+   ++   ++ R+L  +     A+P YLK    P    EL 
Sbjct: 127 LTDRAVQHGPEAVDASIRIGAQLE-DGVVARQLARVPFVFCASPAYLKAHGTPQQPSELS 185

Query: 188 KHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H  +      P       W        VD  +  P + C  +++  ++    V G+GI 
Sbjct: 186 GHRGLLH--RFPTDGRPLRWGLLKDGQRVDAAL-PPSMVCDDIDALATL---AVAGAGIT 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPS------FTVYFCYPEALKNTGKLKA-FRNFIFLKAR 295
            L  ++ +      R+       S        VYFC  +    T K++A F +     A 
Sbjct: 240 RLAAFVAEPYLRDGRLQAVFGADSEWRPAPMEVYFCVSDRRDFTAKIRALFEHLQAGMAP 299

Query: 296 DWK 298
            W+
Sbjct: 300 AWR 302


>gi|30962004|gb|AAP40274.1| AmpR [Erwinia rhapontici]
          Length = 292

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 112/240 (46%), Gaps = 10/240 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT+AA +L+++ +++S+Q+  LE ++G  LF R ARGL LT +G  
Sbjct: 9   NALRAFEAAARHLSFTNAAVELNVTHAAVSQQVKSLEQQLGCSLFIRVARGLMLTTEGEN 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V +E + ++  T      S+ K   KL++         LL   L++F   +P I++Q
Sbjct: 69  LLPVLNESFDRIANTLDRF--SAGKMREKLKVGVVGSFATGLLLPRLEDFNHRHPHIELQ 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N  +D + +  D  IR       S        T+   A  +P         L  Q 
Sbjct: 127 LSTHNNRVDPAAEGHDYTIRF-----GSGAWHGTEATLICDAPFSPLCHPTIARQLQ-QP 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            D H          +  E  +WL +++     P    +  +S L++++  +LG+GIAL P
Sbjct: 181 ADVHKFTLLRSF--RRDEWSHWLHSLNELPPSPSHPVMIFDSSLTMIEAALLGAGIALAP 238


>gi|330821591|ref|YP_004350453.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373586|gb|AEA64941.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 310

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 124/296 (41%), Gaps = 34/296 (11%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+  R F  V  +GS + A   + L+Q ++ R +  LE  +G+ LF R   G   T+  
Sbjct: 18  NWEWYRSFLQVLDTGSLSAAGRAMGLAQPTVGRHVESLEAALGLTLFTRSVDGYAPTDAA 77

Query: 64  SKL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            +L  H                     V+  G +RI  +  +   +L   L      +P 
Sbjct: 78  RELQPHAAAIAASAAALRRAASGHGDGVR--GTVRITASEVVSVEVLPPMLAALREAHPA 135

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREP 180
           ++I+L+L N+  D+    AD A+R+ +P Q++ L++R   + I +HA  A  YL     P
Sbjct: 136 LRIELMLSNRVDDLLHREADIAVRMFRPEQAALLVRRAGSIEIGLHAQRA--YLARHGTP 193

Query: 181 LSIQELDKHNLITFG-----------DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229
            ++ EL +H LI F             + P   EDF                 L+ +S L
Sbjct: 194 RTMAELSRHTLIGFDRETAFVRSLSHRIAPLTREDF----------------ALRTDSDL 237

Query: 230 SIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           + +     G GI L    +   +P LVR++   I+ +   +    E L+ + +  A
Sbjct: 238 AQLAAIRAGFGIGLCQVALGARDPELVRLLPRAISLTLDTWVAMHEDLRRSARCMA 293


>gi|325528778|gb|EGD05837.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 310

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 6/190 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VAR GSF  AA +LH++  ++ +QI  LE   G+ LF R  RG+ LT++G+ 
Sbjct: 18  NALRAFDAVARHGSFAGAAVELHVTHWAVGKQIRLLEDWFGLPLFDRRPRGVVLTDEGAA 77

Query: 66  LHRVTSEVYHKLETTQIELQES--SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L    S  + +L T  + L+ +  S + SG +R+   +      L   L +F   YPDI 
Sbjct: 78  LLNDVSNAFERLGTAVVRLRHNTFSHRISGVVRVNVPMSFALCWLLPRLADFHSRYPDID 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-S 182
           +++   ++ +    D  D  +R   P Q + ++ R L+         P  L+  R P+ S
Sbjct: 138 VRVSTTSRKLRYVADAFDIGVR-SGPEQGTGIVSRPLMPDLRVPACNPALLR--RHPIQS 194

Query: 183 IQELDKHNLI 192
           + +L  H L+
Sbjct: 195 VADLRHHTLL 204


>gi|300702876|ref|YP_003744477.1| transcriptional regulatory protein, lysr family [Ralstonia
           solanacearum CFBP2957]
 gi|299070538|emb|CBJ41833.1| putative transcriptional regulatory protein, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 289

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 13/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F      GS + AA  L LS     + +  LE  +GIKL  R  R   LT+ G    
Sbjct: 1   MQTFVKAVELGSISAAATDLDLSPQLAGKHVRVLEQSLGIKLLNRTTRRQNLTDSGRIFF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +  + E+   P G+LRI+  I  G + L   + E+L ++P++ + L 
Sbjct: 61  ERAKNILAEMAAAEALVAEARSVPRGRLRISAPITFGSHALAPAIPEYLKVHPEVSVDLS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D   R  + +  S L+ R L  + +   AAP YL++  +    ++L 
Sbjct: 121 LTNRTVDLIDEGFDVVFRTGE-LPDSGLLARNLAPLRLVLCAAPAYLESAAKLRRPEDLQ 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALL 244
            H  + F     +    F      D P G    P       +S  ++    V G GI L 
Sbjct: 180 AHECLVFSHTSLRTQWSF------DGPHGRVTIPIDGRFSTDSGEALRAAAVGGLGIILQ 233

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +++D      LVR++     P   ++  Y    + T KL++F +F   K
Sbjct: 234 PHVLLEDEIEAGRLVRLLPKYEPPPRPLHAIYAPDKRMTPKLRSFLDFAVRK 285


>gi|269962264|ref|ZP_06176617.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833095|gb|EEZ87201.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 307

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 101/181 (55%), Gaps = 1/181 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +KL +   V+++GSF  AA+++++ +S +S+ I  LE  +G++L  R  R L++T+ G +
Sbjct: 5   NKLELLLEVSKAGSFAKAADRMNMDRSVLSKHIKQLEEYLGVRLVNRTTRSLSMTQIGLQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++   L+ T+          SG L+I+++   G+  LQ  ++ FL  +P   I+
Sbjct: 65  VIEKAEQISTLLDETKQLTSSFQTDLSGNLKISSSTMFGRQYLQPAIQRFLEQFPKASIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD+  +D+  +  D A R+  P++ S+L+ ++L    +   A+  +++   EP + Q 
Sbjct: 125 LLLDDHHVDVVGNNFDIAFRI-GPMRDSTLVAKRLAENKVAIVASQSFIEKHGEPKTPQA 183

Query: 186 L 186
           L
Sbjct: 184 L 184


>gi|218513570|ref|ZP_03510410.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 332

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V  +GSF+ AA  L ++Q ++SRQ++ LE     +L +R   GL+LT +G ++ 
Sbjct: 7   LRTFQRVVETGSFSAAAHDLDVTQPAVSRQVAALEGHFNTRLLHRTTSGLSLTAEGERML 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   +   +E             SGK+R++    LG  L +  L + L  +P + ++L+
Sbjct: 67  PMALRIIEAVEELGDAAGSEGAMASGKVRLSVPAPLGLYLSE-RLGDLLAAHPKLSVELL 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +  D+  +  D  +RL  P+  SSL+ R++        A+P YL     P + +++ 
Sbjct: 126 FREESSDMIEERLDLEVRL-GPVADSSLVCRRIGWTTAFLVASPAYLARKAAPRTPRDIK 184

Query: 188 KHNLITF 194
            H  + +
Sbjct: 185 DHECLWY 191


>gi|190890407|ref|YP_001976949.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695686|gb|ACE89771.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 323

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 132/304 (43%), Gaps = 33/304 (10%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + VF  VA   SFT AA +L ++ ++IS  I  LE  VG  LF R  R + LTE G 
Sbjct: 6   FEGIVVFTRVAARRSFTAAALELGVTPAAISWTIKQLEARVGAPLFTRTTRSVGLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 S     +E      Q  S  P G LR++    + Q L++  LK F   YPDI++
Sbjct: 66  VFLEQASVGVAYVEAAYEAAQRLSDNPRGLLRLSVPY-VAQTLIEPMLKGFTDAYPDIEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+ +++ +D++ +  D  IR+ + I    +  R           +P Y     +PL  +
Sbjct: 125 ELVFEDRFVDVAGEGYDAGIRIGEMIAQDMVAVRLTPASPRVVVGSPAYFAERGKPLRPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           EL++H+ I    L    +  ++++   +    R         L VN   + +     G G
Sbjct: 185 ELERHSCINI-RLAGGAVYRWDFVEHTEEIGTRSFAMDVAGGLTVNGPATSLSAAQAGVG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVI---------------TPSFTVYFCYPEALKNTGKLKA 285
           +A           N+  ++E +I               +P F +YF  P+  +   KL+A
Sbjct: 244 LAY----------NIAGVVEPLIRQGLLETCLETFMPTSPGFFIYF--PDRKQALPKLRA 291

Query: 286 FRNF 289
           F ++
Sbjct: 292 FVDY 295


>gi|187922072|ref|YP_001893714.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713266|gb|ACD14490.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 303

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 128/283 (45%), Gaps = 25/283 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR GSFT AA  L ++QS++S+ I+GLE  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLYFVTVAREGSFTRAAALLGVTQSALSQAIAGLEARLEIRLLTRTTRSVSATAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL----Y 119
            +L +     + ++E    EL +   KP+G +RI      G+++L+  L   L      Y
Sbjct: 65  ERLLKAIGHRFEEIEAELDELTQMRNKPAGTVRITC----GEHVLRTTLLPKLKPLLRDY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI ++  ++    DI  D  D  +RL   I    +       + M   A+P Y      
Sbjct: 121 PDINVEFDVNYGFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVASPAYFAARPV 180

Query: 180 PLSIQELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
           P + ++L  HN I     T G L     E       V R  G+     L  N+   ++  
Sbjct: 181 PKTPRDLLSHNCINQRMQTAGGLYVWDFERRGKRQNV-RVNGQ-----LIFNTSPGMVDA 234

Query: 235 CVLGSGIALLPD----YIVKDNPNLVRIMEDVITPSFTVYFCY 273
            + G GIA LP+      +K+   LVR++ +    SF  Y+ Y
Sbjct: 235 ALAGLGIAFLPEDEFAPHIKEG-RLVRVLNEWCA-SFPGYYLY 275


>gi|91223314|ref|ZP_01258580.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91192127|gb|EAS78390.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 308

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 139/301 (46%), Gaps = 20/301 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F   AR  SFT AA++L+++Q +ISRQI  LE  +G  +F R  R + LT  G +
Sbjct: 10  NSLVAFEASARHLSFTLAADELNVTQGAISRQIRQLEEYLGKAMFTRANRSINLTPTGLQ 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++  S+    L+  QI  +    +   K+ +ATT  +    L   + +F   + DI I+
Sbjct: 70  YYQAVSQSL--LDIAQITGEVKKWQGEQKITVATTNAMAALWLLPKVAQFQNEHDDIDIR 127

Query: 126 LILDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++  +  +D+     DC I L   R P   + +    L +  +    +P YL+   +P  
Sbjct: 128 ILASDNVLDLRR--LDCDIALFYCRTP--PAEMDVTTLFSEEVFPVCSPLYLEKIGQPNE 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +E+    L+   +     +    W A+V  P   PR + + +N+Y  ++Q  + G GIA
Sbjct: 184 PEEIFNKTLLYLEESQRDWVNWEQWFASVGLPNISPR-NRMNINNYPMLLQAAINGQGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTG----KLKAFRNFIFLKAR 295
           L    +V D   +  LVR +E V++         P   KN G     +K FR ++  +  
Sbjct: 243 LAWGSLVDDYLQSGALVRPVEHVLSTPSNFSMLEP---KNRGLIPASVKRFREWLLQQLP 299

Query: 296 D 296
           D
Sbjct: 300 D 300


>gi|13472013|ref|NP_103580.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022758|dbj|BAB49366.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 301

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 129/298 (43%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L+ F  VAR+G F  AA   ++S SS+S  +  LET +G++L  R  R +  T
Sbjct: 1   MAADLGDLQAFVAVARAGGFREAARVGNVSASSLSETVRRLETGLGVRLLNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L         ++E     +     +P+G LR+   +   + +L   L  FL  YP
Sbjct: 61  EAGARLLERLGPALDEVEAALDVVNGFRGRPAGTLRLNVPVVAAKLVLPRLLPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSL-IQRKLVTIHMHAYAAPHYLKNCRE 179
           DI++++  ++  +DI     D  IR  + ++   + +       H    AAP YL     
Sbjct: 121 DIRVEVTAEDSFVDILASGCDAGIRYEERLEQDMIAVPIGPRRQHYATAAAPAYLDRHGR 180

Query: 180 PLSIQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           P   ++L  H  +      G   P   E    + +V+ P G   +S     +    ++  
Sbjct: 181 PEHPRDLLHHACLRGRFASGLTPPWEFERDGEVVSVE-PTGPLLVSTGTAMAL--ALEVA 237

Query: 236 VLGSGI-ALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V G GI +L  D++    D+  L  ++E         +  YP        L+AF +F+
Sbjct: 238 VAGGGIVSLFEDWLRPYFDDGRLEPVLEPWWQEFSGPFLYYPGRRLTPAPLRAFIDFV 295


>gi|121605478|ref|YP_982807.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594447|gb|ABM37886.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 312

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 128/289 (44%), Gaps = 12/289 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +WD LR+  VVA   S       L ++ +++SR+I+ LE  VG +L +R   G  LT
Sbjct: 13  LKVNWDDLRLLIVVAGHPSLLEVGRVLGIATTTVSRRIAALEAGVGAQLVHRTHVGTVLT 72

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L      +  +LE T  +   +  +  G ++++    L    L+  ++ F   +P
Sbjct: 73  AAGKTLVAALEPLALELEATVRQSAGADSQIEGAIKVSVAEGLVPLTLEA-IQSFRTAHP 131

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +  +L   ++ +D+  + AD A+R+ +P +S  L+ R++  +H   Y +         P
Sbjct: 132 GVVFELDASHRSLDMGKNEADVAVRMLQP-KSDGLVVRRIGPVHFGVYMSSQLPLARFVP 190

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
                L + + +  G  +    E   WL +  R +       LQ  +  S++     G G
Sbjct: 191 RGAGLLARLDGVVLGGELAGLKESV-WLRSRVRAV------ALQTQTLGSLIDAVRRGIG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + ++PD +V+ +  L R+ +    P  T++    +    T KL   R F
Sbjct: 244 VGVIPDELVRVDTRLRRLCDCEAMPRKTLWLIMHQ---RTAKLPRIRLF 289


>gi|119387306|ref|YP_918340.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377881|gb|ABL72644.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 298

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 125/299 (41%), Gaps = 44/299 (14%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL------- 57
           WD  R F  V   GS + AA  L L+Q ++ R +  LE  +G +LF R   GL       
Sbjct: 8   WDHWRSFLAVVEEGSLSGAARALRLTQPTVGRHVDALEDGIGARLFTRSRGGLDPTPLAL 67

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            L  Q   +  +  ++       + EL+       G +R+A    +G  +L   L  F  
Sbjct: 68  ALVSQARDMAMIADDLVRTASGERDELR-------GTVRLAAVDIVGTFVLPPMLAAFHE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P I I+L L  ++ ++    AD A+R+ +P Q + ++ R +  + +  +A   Y+   
Sbjct: 121 RHPGIDIELALSTRNENLLRREADIAVRMVRPEQQA-IVARHVGFVRVGLFAHRRYVAAH 179

Query: 178 REPLSIQELDKHNLI------------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV 225
             P +++ L  H LI            +FG   P   E F                  + 
Sbjct: 180 GLPETVEALFSHPLIGIDQEEGLVAGISFGGH-PLSRESF----------------AFRC 222

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           +S ++ +     G GI      +  D P LVR++ D++   + ++    E L++T +++
Sbjct: 223 DSAVAQLMAVRAGFGIGACHLGLAADEPELVRVLPDMVEFGYEMWIAMHEDLRDTRRMR 281


>gi|227326520|ref|ZP_03830544.1| DNA-binding transcriptional activator GcvA [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 307

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 22/297 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSSLNEATRKLQSRSAK--GALTVSLLPSFAIHWLVPRLSSFNSDYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++D D   D  D AI   +      L   KL   ++    +P  L           
Sbjct: 127 IQAVDRDEDRLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPVLLTG--------- 176

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSG 240
              H L T  DL+   +       +WL+   +   +  +    + S+ + ++Q  + G G
Sbjct: 177 --NHPLKTPDDLVAHTLLHDASRRDWLSYTRQLGVQINVQQGPIFSHSAMVLQAAIHGQG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +AL  + + +   +   LV    DV+      Y    ++    GK+ AFR++I  +A
Sbjct: 235 VALANNVMAQTEIEAGRLVCPFNDVLVSRNAFYLVCHDSQAELGKIAAFRHWILARA 291


>gi|75760891|ref|ZP_00740903.1| Transcriptional regulators, LysR family [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218897372|ref|YP_002445783.1| transcriptional regulator, LysR family [Bacillus cereus G9842]
 gi|228901018|ref|ZP_04065229.1| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 4222]
 gi|228965395|ref|ZP_04126485.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|74491626|gb|EAO54830.1| Transcriptional regulators, LysR family [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218541706|gb|ACK94100.1| transcriptional regulator, LysR family [Bacillus cereus G9842]
 gi|228794293|gb|EEM41809.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228858615|gb|EEN03064.1| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 4222]
          Length = 300

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 131/284 (46%), Gaps = 22/284 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   ISIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      ++H++E  +  LQ+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHCKTIFHEVEQARSALQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISIPLYKSDLTLVVPTGHRLAK 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    + FN+     RPI       L++++  S+
Sbjct: 181 RNHVSITELQNYPLILLPKNFFLTELITSHCQKFNFRP---RPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP   +    N N+  I  +  TP   +   Y
Sbjct: 231 IQMVSKGMGITVLPQPYIDFLQNKNIQAIKIENPTPIIEIGLIY 274


>gi|88797741|ref|ZP_01113329.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
 gi|88779418|gb|EAR10605.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
          Length = 309

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 136/274 (49%), Gaps = 10/274 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L ++  V  SGSF  AA QL+ S+S IS Q+S LE+ + ++L  R  R LT T +G
Sbjct: 8   DLKLLGIYCAVVDSGSFAGAARQLNSSRSRISEQVSQLESRLEVRLLQRSTRRLTTTTEG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K++   + V  +L  +++E    +  PSG++ +  T D     +   L  F   +PDI+
Sbjct: 68  RKIYE-QARVLPQL-LSRVEAIAGADTPSGRVSMTMTHDFAHRFILPVLPRFTQQHPDIE 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  ILD++ +D+     D A+R+  P +  S++ R +       +A+  Y++    P S 
Sbjct: 126 LDFILDDQPLDLVEQQIDLALRVSLP-KDDSVVARVMHQESFGLFASRKYIEQFGMPRSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA- 242
           +EL++H  +     +P+    F++     R + +P     + NS   ++Q  + G GIA 
Sbjct: 185 EELNQHRWV-MTKQVPRAALPFHF--KDHRLVIQPE-RAHRCNSPHLMIQMVLAGVGIAS 240

Query: 243 LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYP 274
           LLP  +  +  +  L+ I  ++ T     Y  YP
Sbjct: 241 LLPTTVKAEVASGELIPIFPELKTDPVNYYLVYP 274


>gi|261822616|ref|YP_003260722.1| DNA-binding transcriptional activator GcvA [Pectobacterium wasabiae
           WPP163]
 gi|261606629|gb|ACX89115.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 307

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 22/297 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSSLNDATRKLQSRSAK--GALTVSLLPSFAIHWLVPRLSSFNSDYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++D D   D  D AI   +      L   KL   ++    +P  L           
Sbjct: 127 IQAVDRDEDRLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPVLLTG--------- 176

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSG 240
              H L T  DL+   +       +WL+   +   +  +    + S+ + ++Q  + G G
Sbjct: 177 --NHPLKTPDDLVAHTLLHDASRRDWLSYTRQLGVQINVQQGPIFSHSAMVLQAAIHGQG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +AL  + + +   +   LV    DV+      Y    ++    GK+ AFR++I  +A
Sbjct: 235 VALANNVMAQTELEAGRLVCPFNDVLVSRNAFYLVCHDSQAELGKIAAFRHWILARA 291


>gi|315122951|ref|YP_004064957.1| putative LysR-family transcriptional regulatory protein
           [Pseudoalteromonas sp. SM9913]
 gi|315016711|gb|ADT70048.1| putative LysR-family transcriptional regulatory protein
           [Pseudoalteromonas sp. SM9913]
          Length = 295

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 125/290 (43%), Gaps = 18/290 (6%)

Query: 6   DKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL   +VF  VA SGSFT  A++L +S+  ++R I   E  +  +L +R  R +TLT  
Sbjct: 2   DKLTAAQVFVDVAYSGSFTATADRLEMSRPMVTRHIESAEAWLNTRLLHRTTRKVTLTTA 61

Query: 63  GSKLHRVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           G        E+   L      +E  +S  + SGK+R+AT++ LG   L      F+  +P
Sbjct: 62  GEA---CLPEIEQWLAQANRLVEQTKSQQQLSGKIRVATSMSLGFAQLAPIFTRFMKRHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +QI + L++   D+     D AIR+       SLI + +        A+  YL +    
Sbjct: 119 SVQIDIDLEDSTTDLIEQRVDLAIRIAAN-PDPSLIGKPIAECESILVASASYLADYPPI 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + Q+L  H  + +     K  + + W            + C L  N   +++   + G 
Sbjct: 178 TTPQQLSTHQCLGY-----KNFDRYIWHLHNGDEFQSVDVKCNLSANEATTLLHAAIAGG 232

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GI++ P Y+      +  L R++         +Y  YP     +  ++A 
Sbjct: 233 GISVQPTYLANQYILDGRLQRVLAPWTLNPMKIYVLYPSRQHLSATVRAL 282


>gi|317132189|ref|YP_004091503.1| transcriptional regulator, LysR family [Ethanoligenens harbinense
           YUAN-3]
 gi|315470168|gb|ADU26772.1| transcriptional regulator, LysR family [Ethanoligenens harbinense
           YUAN-3]
          Length = 284

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 129/291 (44%), Gaps = 34/291 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR+F+ VA +GS T A+E +  +QS+++  I  LE E+ + LF RH++G+TLTE+G +L
Sbjct: 5   ELRIFWEVAYAGSITKASENMCYAQSNVTAHIRHLEQEIEVTLFVRHSKGVTLTEKGKQL 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD----- 121
            R   +V H L+  +  L ++  KP   L+I  T  +  + L   L  F  +YP      
Sbjct: 65  LRYADQVVHLLDEAKQHLTDN--KP--ILKIGATQTIAAHALPIWLDAFARVYPQTRFSV 120

Query: 122 ---IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
              IQ QL+    D  +   + +  I   K I   S+ Q  L  I         Y ++ R
Sbjct: 121 STGIQSQLLQAVADGGLDCAFVNTQIENSKVIALFSM-QENLALITPENRC---YEESMR 176

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            PL   +            IP C       + V R  G P    +  ++   I++   LG
Sbjct: 177 LPLVASD------------IPGCPYRGLLESWVLRNTGIPA-EVITFDTLAGIIKAVALG 223

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GI+LLP  +V +N  L     D I  +F        A  N     A RNF
Sbjct: 224 WGISLLPRAVVPENEPLRLFCADEIGATFIRL-----AASNNTINPAVRNF 269


>gi|290473569|ref|YP_003466439.1| transcriptional regulator (postitive) of cleavage of glycine (LysR
           family) [Xenorhabdus bovienii SS-2004]
 gi|289172872|emb|CBJ79643.1| transcriptional regulator (postitive) of cleavage of glycine (LysR
           family) [Xenorhabdus bovienii SS-2004]
          Length = 306

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 136/299 (45%), Gaps = 24/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S Q+  LE  +G+KLF R  R L LTE G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQMKSLEDFLGLKLFRRRNRSLLLTEDGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++ +       L   L  F   +P I ++
Sbjct: 69  YYLDIKEIFTAINDATRKLQARSAK--GALTVSLSPSFAIQWLVPRLSGFNQSFPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   +++ D   D  D AI   R   P     +   +L   ++    +P  L   R PL 
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRGNWP----GMRTDRLYPEYLLPVCSPSLLMGER-PLK 181

Query: 183 I-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLS-IMQYCVLG 238
           I  +L KH L+             +W A + +   + +I+  Q  + S+ S ++Q  V G
Sbjct: 182 IPADLAKHTLL-------HDSSRRDWQAYIRQLDMQQQINVQQGPIFSHSSMVIQAAVHG 234

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL  + + +   D   LV    DV+      Y    +     GK+ AFR +I ++A
Sbjct: 235 QGVALANNVMAQNEIDAGRLVCPFNDVLVSKNAFYLVCHDNQAELGKIAAFRKWILMQA 293


>gi|254249096|ref|ZP_04942416.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875597|gb|EAY65587.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 369

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 94/184 (51%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  SGSF  AA +L +++S++++ ++ LE  +G +L  R  R L LT++G   +   
Sbjct: 71  FVDVVESGSFAAAALRLGMTRSAVAKIVARLELRLGARLLQRTTRQLGLTDEGLVYYEQC 130

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L   +  L     +P+G++R++  +  G+  +   ++  +  +P ++I +   +
Sbjct: 131 RRLLAELGEAEAALDAGRREPAGRVRVSVPVLFGRQCVAPVVRRLVERHPRLEIDMSFSD 190

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D+  D  D A+R+ +   +S+L+ RKL    M   A+P YL     P  + EL  H 
Sbjct: 191 RVADLVNDGFDLAVRIGELADTSALVGRKLGVQRMGICASPAYLVRHGRPSGLDELASHV 250

Query: 191 LITF 194
            I +
Sbjct: 251 GIAY 254


>gi|91790593|ref|YP_551545.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699818|gb|ABE46647.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 298

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 97/190 (51%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +++F  +   GSFT AA+ L L +++++  +  LE  +G +L +R  R ++ T+ G+
Sbjct: 4   FHSMQLFTRIVELGSFTKAADDLQLPRATVTHAVQQLEKRLGARLLHRTTRHVSPTQDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +        KP GKLR+     L ++ L   + +F   YPDI++
Sbjct: 64  AYYERCLRLLTDLEEAESAFVNVGSKPRGKLRVDLHGTLAKHFLLPVIGQFFERYPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+  +  DC +R+ + +  SS++ R++  +     A+  YL     P +++
Sbjct: 124 EIGMGDRLVDLVREGVDCVLRVGE-LTESSMVGRRVALLEQVTCASREYLARHGTPDTVE 182

Query: 185 ELDKHNLITF 194
            L  H  + F
Sbjct: 183 ALRGHRAVNF 192


>gi|307313439|ref|ZP_07593061.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306899265|gb|EFN29901.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 294

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 133/289 (46%), Gaps = 18/289 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT A  +L +SQ++IS Q+  LE  +G+KLF R  RGL LT++GS 
Sbjct: 9   NALRAFEASARHCSFTRAGLELRVSQTAISHQVKSLEDLLGVKLFRRLPRGLALTDEGSA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+V+ ++  T    +E +      + +  T  +G   L   L +F   +P + ++
Sbjct: 69  LAPVMSDVFKRMCATLSRFEEGNFHEVVTVGVVGTFAIG--WLMERLPDFHDAHPSLDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ +N  +D++ D  D AIR        +     L    +    +P      +EP+ +  
Sbjct: 127 ILSNNNRVDLAGDGLDFAIRFGDGSWHGTDAM-HLSAAPLSPVCSPQIAARLKEPVDLAR 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++          + +      W A   R  G   P +  +  ++ L++ +    GSG AL
Sbjct: 186 IE----------LLRSYRSDEW-AQWFRAAGAQPPILRGMVFDTSLALAEAAARGSGAAL 234

Query: 244 LPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP  +        R+++  D+   +   +  + ++ + T  + AF++++
Sbjct: 235 LPITMFGHYLESGRLVQPFDITVAAGDYWLTWLKSRQFTRGMIAFKSWL 283


>gi|295700487|ref|YP_003608380.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439700|gb|ADG18869.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 300

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 146/308 (47%), Gaps = 19/308 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D+L  F  V  +GS T AA QL+L+ S+ SR +  LE ++G  L  R  R L LT
Sbjct: 1   MKSTFDELEAFVSVVDTGSITAAANQLNLTISATSRTLGRLEDKLGTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    R    +   LE  + ++     +PSG+LR+        +++  N+  +   +P
Sbjct: 61  EEGQAFLRDARAIISLLENAEEQMAIRRERPSGRLRVDAATPFMLHVIVPNVPGYRARFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R +    M   A+P YL    +P
Sbjct: 121 QVELELNSNEGIIDLLEHRTDVAIRIGQ-LKDSTLHSRLVGRSRMRILASPAYLDAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RIS-CLQVNSYLSIMQYCVLG 238
              ++L KH+L+ F    P+ +  +  L     P  EP RIS  +  +S  ++ Q  + G
Sbjct: 180 RQAEDLRKHSLLGFTK--PEGLNVWPILG----PDNEPYRISPAVHSSSGETLRQLALAG 233

Query: 239 SGIALLPDYIVKDNPN-------LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +GI  L D++   +         L+R   D+  P   VY+        + ++ +F +++ 
Sbjct: 234 AGIVCLSDFMTARDRREGTLVQILLRQTLDLRQPINAVYY---RNTATSSRIGSFVDYLV 290

Query: 292 LKARDWKF 299
              R  +F
Sbjct: 291 ESVRGSEF 298


>gi|208779932|ref|ZP_03247276.1| LysR substrate binding domain protein [Francisella novicida FTG]
 gi|254374677|ref|ZP_04990158.1| hypothetical protein FTDG_00852 [Francisella novicida GA99-3548]
 gi|151572396|gb|EDN38050.1| hypothetical protein FTDG_00852 [Francisella novicida GA99-3548]
 gi|208744387|gb|EDZ90687.1| LysR substrate binding domain protein [Francisella novicida FTG]
          Length = 298

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 130/267 (48%), Gaps = 13/267 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LET+    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKAIGISPPVVSKQIQILETKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 64  LLYEKASLILNELEATEEKIFAEDILIDSELKISAPNSFGIKYLCNIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+ +     A+  YLKN   P +I+
Sbjct: 124 NINLSDSYINIIDEDFDLVIRI-GALDDSNLITKKLMPMPSLLCASEQYLKNYGIPKTIK 182

Query: 185 ELDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L+ H  I + +        +E  N    ++      RI     NS   ++Q C+ G GI
Sbjct: 183 DLENHLFIQYNNHSSSNRIILESVNKTEIIN---VRQRIVT---NSAEMMLQGCLDGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITP 265
           A LP + + D   +  LV ++ D   P
Sbjct: 237 AKLPLFEIIDKIHDKKLVHLLPDARNP 263


>gi|152995725|ref|YP_001340560.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836649|gb|ABR70625.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 311

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 2/139 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F   AR GSF  AA++L ++ S+IS QI GLE+ +G++LF R  R + LTE G  
Sbjct: 21  NSLKCFESAARHGSFNKAAKELSVTPSAISHQIKGLESFLGLELFRRTKRKVILTEAGES 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    ++ +LE+   EL+  S + SG LR+A         L   ++ F   YPDIQI+
Sbjct: 81  YLKPIKSIFEQLESATSELK--SKQKSGSLRLAVAPAFLTRWLMPRMERFQERYPDIQIE 138

Query: 126 LILDNKDIDISMDYADCAI 144
           +      ID S +  D A+
Sbjct: 139 ISSSTGLIDFSANDIDMAV 157


>gi|78063287|ref|YP_373195.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971172|gb|ABB12551.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 313

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 139/302 (46%), Gaps = 26/302 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+ G  
Sbjct: 10  NRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTDAGRA 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++    E+    +   +    G LR++  ID G  ++   +      +P + ++
Sbjct: 70  FYDACRDIVRAAESALDAVSSDTGPLRGTLRVSVPIDYGALVVAPAVVALRDRHPGLDVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +++ +D+  D  D AIR+ + +  S+    +L T      A+P ++     P   Q+
Sbjct: 130 LVANDRVVDLVADNLDVAIRIGR-LADSNYRAVQLGTYEKWLVASPAFVARHGRP---QD 185

Query: 186 LDKHNLITFGDL--IPKC----MEDFNWLATVDRPIGEPRISCL-QV--NSYLSIMQYCV 236
            D    + F  L  +P+     +ED N         G   + C+ QV  N+  +     +
Sbjct: 186 PDALAALPFVMLSTLPRPQTVELEDVNG--------GTASVRCVAQVVSNTATACRAIVL 237

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G  LL D+   D+     LVR++    +    ++  YP     + K++AF +   +K
Sbjct: 238 AGGGFGLLTDFSTADDVAAGRLVRLLPAWRSAPAGIHAVYPSTRLPSPKVRAFVD--AMK 295

Query: 294 AR 295
           AR
Sbjct: 296 AR 297


>gi|195970031|ref|NP_437680.2| putative transcriptional regulator, lysR family protein
           [Sinorhizobium meliloti 1021]
 gi|307312331|ref|ZP_07591966.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307319769|ref|ZP_07599193.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|186929516|emb|CAC49540.2| probable transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306894500|gb|EFN25262.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306899500|gb|EFN30131.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 299

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 130/302 (43%), Gaps = 31/302 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR GSFT A  +L ++Q+++S QI  +E  VG  LF R  R + LTE 
Sbjct: 7   FPLNALRVFEAAARLGSFTKAGNELGMTQTAVSYQIKLIEESVGEPLFLRRPRQIALTEV 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R+  +V    E  Q  +  +    +  L I++T       L  ++  F L  P++
Sbjct: 67  G---QRLAPKVTEAFELMQEAVASARGDAASTLLISSTATFASQWLARHIGTFQLAQPNM 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP---HYLKNCRE 179
            ++L  ++  ID S++  D AIR    +    L+  +L+ +      +P     +    E
Sbjct: 124 AVRLSANDAMIDFSIEAVDVAIRSGLGVW-PGLVSHRLMKVEFTPMLSPALASTIGGVNE 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISC-LQVNSYLSIM 232
           P   ++L K  +I   D          W     R  G      + R+   L   S+ +  
Sbjct: 183 P---RDLLKLRIIDPQD---------RWWPLWFRAAGVRDADLDGRVPTRLGAQSFEA-- 228

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + G G+A+L      D+  L R+ +      +     +  YP A +N  K++ FR++
Sbjct: 229 GAAIAGQGVAILTPQFYTDDVALGRLYQPFDLRGSDGHDYWLVYPHARRNVPKIRNFRDW 288

Query: 290 IF 291
           I 
Sbjct: 289 IL 290


>gi|87118326|ref|ZP_01074225.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86165960|gb|EAQ67226.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 300

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 131/299 (43%), Gaps = 18/299 (6%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  V   GS   AA+ L LS++ +S  +  LE ++G+KL  R  R +
Sbjct: 1   MDVSFEQLKSMVVFAQVVEQGSLVGAAKHLSLSRAVVSYHLKKLEQQLGVKLLNRSTRSI 60

Query: 58  TLTEQGSKLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKE 114
            LT++G   +   RV ++  H+       L++   +P G L+I   +++G  L+   L  
Sbjct: 61  GLTQEGEVYYQRCRVIAQQAHEANQAIENLKD---EPEGLLKITCPVNVGLQLIVPALNG 117

Query: 115 FLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
           F  LYP I++ L+L +  ++I     D AIR    +  S L   KL ++     AAP YL
Sbjct: 118 FRDLYPKIELDLMLSDDVVNIMKQGIDLAIR-GAELTDSGLQASKLASLQNCLCAAPSYL 176

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
                P +  +L +H+ + +     K   +   L   +R         +  N+  +   +
Sbjct: 177 NKQGRPNTPDDLVQHDWVVY-----KLAANSVSLTKGNRFFDIKVSGSISTNNAAARTAF 231

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              G GI  +P Y          L R++         +Y  +P     T KL+   +++
Sbjct: 232 IEAGQGIGRVPLYDAGPKIKAGKLERVLASYKLSDIELYAVFPPGTGETKKLRLLLDYL 290


>gi|182678278|ref|YP_001832424.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634161|gb|ACB94935.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 310

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 8/246 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V   GSF  AA QL +  +++SR++  LE  +GI+L  R  R + +TE G  
Sbjct: 5   DDMITFVRVVERGSFVAAARQLGVPPATVSRKVQELEHRLGIELLRRTTRRVFVTEAGRA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S+    +E  ++  +  S KPSG LR+     +G  ++   L  F  LYP++ I 
Sbjct: 65  FFDNASQALTLIEEAELVAKSYSSKPSGVLRLLAPYTVGVLIIDQILPAFQRLYPEVLIY 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+N+ +D+     D A+R+   +  S+     L+       AAP Y++      +I +
Sbjct: 125 LTLNNEPLDLIEHGFDVAMRV-GALPDSTYAVHHLLRTGRRIVAAPSYIEKHPPIETIAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L+ H  ++F    P        + T +R   + +++    + +N    ++ + + G G +
Sbjct: 184 LEHHVFLSFAIETPPS----GVVMTFNRGEEQAQVTLAPRMVINEASVVLNHVLRGEGFS 239

Query: 243 LLPDYI 248
           L  D +
Sbjct: 240 LFGDIL 245


>gi|170698805|ref|ZP_02889868.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136283|gb|EDT04548.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 310

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 6/190 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VAR GSF  AA +LH++  ++ +QI  LE   G+ LF R  RG+ LT++G+ 
Sbjct: 18  NALRAFDAVARHGSFAGAAAELHVTHWAVGKQIRLLEDWFGLPLFDRRPRGVVLTDEGAV 77

Query: 66  LHRVTSEVYHKLETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L    S  + +L T  + L+ ++   + SG +R+   +      L   L +F   YPDI 
Sbjct: 78  LLNDVSHAFERLGTAVVRLRHNTFTHRISGVVRVNVPMSFAFCWLLPRLADFHSRYPDID 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-S 182
           +++   ++ +    D  D  +R   P Q +S++ R L+         P  L+  R P+ S
Sbjct: 138 VRVSTTSRKLRYVADAFDIGVR-SGPEQGASVVSRPLMPDLRVPACNPALLR--RHPIQS 194

Query: 183 IQELDKHNLI 192
           + +L  H L+
Sbjct: 195 VADLRHHTLL 204


>gi|56710243|dbj|BAD80966.1| LysR family transcriptional regulator [uncultured bacterium]
          Length = 316

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 127/288 (44%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF+ AAE L ++ ++++  +  LE  +G+ L  R+ R L LT+ G    
Sbjct: 7   MQVFVRVVECGSFSRAAESLDIANATVTSSVRNLENYLGVTLLSRNTRSLRLTDDGEGYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++V  ++   + ++++   + SG+L I +     + LL   L  F   +P + + L 
Sbjct: 67  EQCNQVLQQIADMEAQVRQKKGEISGQLCIESPAAFARALLCPALPAFTAQHPGLSVALR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE-L 186
             +   D+     D AIR+   +  + L+ R L   H  A AAP  LK    P   Q  L
Sbjct: 127 QTDHAEDLIATGTDVAIRI-DSVNDADLVARPLYQAHYVACAAPGLLKRIGTPQQPQALL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H L  FG      + D+ +    +     PR   L  NS  +++Q  +   G+  + D
Sbjct: 186 PQHCLGIFG-AGRYTVSDWTFAREGEHHQLTPRGE-LHFNSTDALIQAALAEQGVIYVLD 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             V     +  LV +  D  T S   Y   P++     + +AF  FI 
Sbjct: 244 VFVNGLIRSGELVELFPDWSTGSRNFYTVTPKSRFVAPRTRAFIEFIL 291


>gi|251791386|ref|YP_003006107.1| putative DNA-binding transcriptional regulator [Dickeya zeae
           Ech1591]
 gi|247540007|gb|ACT08628.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 314

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 30/251 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S S++S+ ++ LE E+ +KL  R  R + LTE G   +
Sbjct: 7   MSVFARVVEFGSFTAAARQLAMSVSAVSQTVTRLEDELQVKLLNRSTRSIGLTEAGRIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H+      +L   +  P+G LRI ++  + QN+L     + L  YP + + L+
Sbjct: 67  HGCRRMLHEAHEVHEQLYAFNNTPTGTLRIGSSSTMAQNVLATMTTDMLKEYPGLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL   +L ++ M   AA  YL     P       
Sbjct: 127 CGIPAPDLIADGLDIVIRV-GALQDSSLYSTRLGSMPMVVCAAKSYLAQHSAPEK----- 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-------------VNSYLSIMQY 234
                      P  + + +WL    RP  E  +   +              N  ++++++
Sbjct: 181 -----------PGDVSNASWLEYSVRPDSEFELIAPEGITTRLTPQGRFVTNDPVTLIRW 229

Query: 235 CVLGSGIALLP 245
              G+GIA +P
Sbjct: 230 LKNGAGIAYVP 240


>gi|221210864|ref|ZP_03583844.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221169820|gb|EEE02287.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 317

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 133/301 (44%), Gaps = 36/301 (11%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L VF  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+ G
Sbjct: 8   NLNRLAVFVAVVEAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    ET    +   +    G LR++  +D G  ++   +      +P + 
Sbjct: 68  RAFYDACRDIVQAAETALDAVSSDAGPLRGTLRVSVPVDYGAQVVAPAVVALRDAHPSLD 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREP 180
           ++LI +++ +D+  +  D A+R+ + +  S+    +L T      A+P ++      R+P
Sbjct: 128 VELIANDRVVDLVAENLDVAVRIGR-LADSNYRAVQLGTYEKWLVASPAFVARYGLPRDP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP---------IGEPRISC---LQVNSY 228
            ++  L                  F  L+T+ RP          G+  + C   +  N+ 
Sbjct: 187 AALATL-----------------PFVMLSTLARPHTLELESARGGKASVRCNASVVSNTA 229

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            +     + G G  LL D+ + D+     LVR++         ++  YP     + K++A
Sbjct: 230 TACRAIALAGGGFGLLTDFSIADDVAAGTLVRLLPAWRAAPAGIHAVYPSTRLPSPKVRA 289

Query: 286 F 286
           F
Sbjct: 290 F 290


>gi|190892500|ref|YP_001979042.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697779|gb|ACE91864.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 308

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V  +GSF+ AA  L ++Q ++SRQ++ LE     +L +R   GL+LT +G ++ 
Sbjct: 7   LRTFQRVVETGSFSAAAHDLDVTQPAVSRQVAALEGHFNTRLLHRTTSGLSLTAEGERML 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   +   +E             SGK+R++    LG  L +  L + L  +P + ++L+
Sbjct: 67  PMALRIIEAVEELGDAAGSEGAMASGKVRLSVPAPLGLYLSE-RLGDLLAAHPKLSVELL 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +  D+  +  D  +RL  P+  SSL+ R++        A+P YL     P + +++ 
Sbjct: 126 FREESSDMIEERLDLEVRL-GPVADSSLVCRRIGWTTAFLVASPAYLARKAAPRTPRDIK 184

Query: 188 KHNLITF 194
            H  + +
Sbjct: 185 DHECLWY 191


>gi|170697391|ref|ZP_02888483.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137722|gb|EDT05958.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 296

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 123/288 (42%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 13  LLVFEAAARHESYTRAADELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 73  VELSGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-PLSIQEL 186
                ID   D  D AI +        L   +L    + A A+P      +  P +    
Sbjct: 132 SRIGGIDFHTDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIASPDAAGRRKAGPRAPAWA 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
               L+          E F+      R   E RI    ++ S+L  +Q    G GI L+P
Sbjct: 191 VGQTLLGVTSNQHAWAEWFSHFGLDHR---EMRIGPSFELTSHL--IQAVRAGMGIGLVP 245

Query: 246 DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V+D    N +  + D IT   + Y  YP        L AFR ++ 
Sbjct: 246 KVLVEDELGRNELVSIGDAITSQRSYYLVYPPENDTLPSLVAFRAWLL 293


>gi|254229140|ref|ZP_04922560.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262396585|ref|YP_003288438.1| transcriptional regulator LysR family protein [Vibrio sp. Ex25]
 gi|151938431|gb|EDN57269.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262340179|gb|ACY53973.1| transcriptional regulator LysR family protein [Vibrio sp. Ex25]
          Length = 308

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 139/301 (46%), Gaps = 20/301 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F   AR  SFT AA++L+++Q +ISRQI  LE  +G  +F R  R + LT  G +
Sbjct: 10  NSLVAFEASARHLSFTLAADELNVTQGAISRQIRQLEEYLGKAMFTRANRSINLTPTGLQ 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++  S+    L+  QI  +    +   K+ +ATT  +    L   + +F   + DI I+
Sbjct: 70  YYQAVSQSL--LDIAQITGEVKKWQGEQKITVATTNAMAALWLLPKVAQFQNEHDDIDIR 127

Query: 126 LILDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++  +  +D+     DC I L   R P   + +    L +  +    +P YL+   +P  
Sbjct: 128 ILASDNVLDLRR--LDCDIALFYCRTP--PAEMDVTTLFSEEVFPVCSPLYLEKIGQPSE 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +E+    L+   +     +    W A+V  P   PR + + +N+Y  ++Q  + G GIA
Sbjct: 184 PEEIFNKTLLYLEESQRDWVNWEQWFASVGLPNISPR-NRMNINNYPMLLQAAINGQGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTG----KLKAFRNFIFLKAR 295
           L    +V D   +  LVR +E V++         P   KN G     +K FR ++  +  
Sbjct: 243 LAWGSLVDDYLQSGALVRPVEHVLSTHSNFSMLEP---KNRGLIPASVKRFREWLLHQLP 299

Query: 296 D 296
           D
Sbjct: 300 D 300


>gi|307129050|ref|YP_003881066.1| putative transcriptional regulator LYSR-type [Dickeya dadantii
           3937]
 gi|306526579|gb|ADM96509.1| Putative transcriptional regulator LYSR-type [Dickeya dadantii
           3937]
          Length = 314

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 30/251 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S S++S+ ++ LE E+ +KL  R  R + LTE G   +
Sbjct: 7   MSVFARVVEFGSFTAAARQLQMSVSAVSQTVTRLEDELQVKLLNRSTRSIGLTEAGRIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H+ +    +L   +  P G LRI ++  + QN+L     + L  YP + + L+
Sbjct: 67  HGCRRMLHEAQEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLANMTTDMLKEYPGLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL   +L ++ M   AA  YL     P       
Sbjct: 127 CGIPAPDLIADGLDIVIRV-GALQDSSLYSTRLGSMPMVVCAARSYLTQHGSPEK----- 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-------------VNSYLSIMQY 234
                      P  + + +WL    RP  E  +   +              N  ++++++
Sbjct: 181 -----------PADVSNISWLEYSVRPDSEFELIAPEGITTRLTPQGRFVTNDPVTLIRW 229

Query: 235 CVLGSGIALLP 245
              G+GIA +P
Sbjct: 230 LKNGAGIAYVP 240


>gi|91225331|ref|ZP_01260499.1| putative transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91189970|gb|EAS76242.1| putative transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 307

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 126/260 (48%), Gaps = 11/260 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA+ GSFT AA+ L ++ S++S+ ++ LE ++G KL +R  R + LT  G   
Sbjct: 8   EVRHFVTVAQLGSFTLAAQALGMTGSALSKSVARLEKQLGTKLLHRTTRRIALTNDGDSY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +    LE  +  L    + PSG++RI     LG+  +   L E    +  + + +
Sbjct: 68  LADCLKAMTILEEAEKRLSNQQLLPSGRVRIDLPAVLGRRAILPKLLELTSKFEQLDLSI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE- 185
             +++  D+  D  D AIR+     S  ++ RK+        A+P YL   R P++ +E 
Sbjct: 128 TFNDRPTDLVSDGIDLAIRVGHLENSGDIVARKIGEQKRVICASPSYLAT-RGPITKKED 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCL-QVNSYLSIMQYCVLGSGIAL 243
           L +H+ I    +     +  +WL    +   E   IS   ++     I+Q  + G+G+A 
Sbjct: 187 LAQHDCIVGWPI----GQRHSWLLKNAKGATESVDISARHEIADCEGILQSALSGAGLAQ 242

Query: 244 LPDYIVK---DNPNLVRIME 260
           LP ++VK   D+  L  ++E
Sbjct: 243 LPVWLVKQYLDDGQLCPVLE 262


>gi|16264543|ref|NP_437335.1| putative transcriptional regulator, lysR family protein
           [Sinorhizobium meliloti 1021]
 gi|307307611|ref|ZP_07587343.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307319378|ref|ZP_07598806.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15140680|emb|CAC49195.1| putative transcriptional regulator, lysR family protein
           [Sinorhizobium meliloti 1021]
 gi|306895000|gb|EFN25758.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306901737|gb|EFN32338.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 315

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 131/297 (44%), Gaps = 13/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +RVF  V   G+ + A     ++ +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNVRVFVRVVELGTLSAAGRDQRVTPAVASNRIKELERHMGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   +   +  + + S  P G L+I   + +G+ L+   + EF   YP
Sbjct: 60  EHGRVFYEGAVKILEAVNEAESAIADLSRNPKGALKITAPLGIGRRLIAPGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   ++ S+L  R ++        +P Y +    P
Sbjct: 120 DIEVRLRLSDHNVDILAEGVDIAFKL-GILEDSNLRMRGIMNCDRVLCGSPRYFERRGIP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDR----PIGEPRISCLQVNSYLSIMQYCV 236
            S  +L  H+        P   E +  L T D      +G P  S    +    + Q+ +
Sbjct: 179 SSPDDLLSHSHDCLLLRYPGSKEYYWTLQTPDGVRKFEVGGPYDS----DDGDVLTQWAL 234

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI   P + VK   D   LV ++E+       +   YP       K++   +F+
Sbjct: 235 DGRGIVNKPLFEVKQHIDEGLLVPVLEETPPLGAQLAAIYPHKRFQDPKVRLMIDFM 291


>gi|310823374|ref|YP_003955732.1| transcription regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309396446|gb|ADO73905.1| Transcription regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 293

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 137/283 (48%), Gaps = 15/283 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +GS + AA+QL LS +++SR ++ LE EV   L  R  R +T+T  G + +   
Sbjct: 4   FVRVIEAGSLSAAAKQLRLSTAAVSRHVTALEQEVATPLLARTTRRMTVTVAGQQYYERC 63

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN--LKEFLLLYPDIQIQLIL 128
             V  +++  Q   ++  ++  G LRI+  + +G   L G   L+  +  +P +++ + L
Sbjct: 64  LRVLREVDEAQSIGRDGRLE--GLLRISLPVTVG--FLSGASLLRSLVGKHPGLRLDVRL 119

Query: 129 DNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++ ID+ ++  D AIR+  KP  S+ ++ R L   H    A+P Y++   +P +   L 
Sbjct: 120 EDRLIDLVLEDVDVAIRVAAKPPLSTEIVARPLSRWHRVVVASPAYVRRHGKPKTSAALA 179

Query: 188 KHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  I+   D   +     N  AT  R   + R SC   N+   + +  + G G+ALLP 
Sbjct: 180 AHESISPVRDAATEVWTLLNGAATA-RVRMKVRCSC---NAGHLLRELALDGLGVALLPH 235

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + V     N  L +++    +    VY  Y  + ++  +++  
Sbjct: 236 WFVAADLQNKRLRQLLPGWQSEPVEVYALYRASRRHEPRVRVL 278


>gi|254523707|ref|ZP_05135762.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721298|gb|EED39823.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 300

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 131/283 (46%), Gaps = 22/283 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+++ F  V  +GS + AAEQL  + S +SR +  LE ++G  L  R  R L LT
Sbjct: 1   MKTTLDEMQAFLAVIDTGSISAAAEQLGQTPSGVSRALGRLEDKLGTTLLTRTTRRLHLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    R    +   +E+ + ++     +P+G+LR+   +    +++   +  +   YP
Sbjct: 61  AEGEAYRRHARAIIDAVESAEEQMAARRERPAGRLRVDAAMPFVLHVIAPLVAGYRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q++L   ++ ID+     D AIR+  P+  S+L  R L    +   A+P YL    EP
Sbjct: 121 DVQLELNSSDRYIDLLERRTDLAIRI-GPLADSTLHARPLGRCRLRLVASPAYLDRMGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIMQYC 235
            ++  L +H L+ F +  P+ +  +      +     RP        + V+S  ++ +  
Sbjct: 180 STVAALGQHTLLGFNE--PESLNRWPLPGESEGLLLVRP-------DIAVSSGETLRRLA 230

Query: 236 VLGSGIALLPDYIVKDN-------PNLVRIMEDVITPSFTVYF 271
           V G GI  L D++   +       P L   M +V  P   VY+
Sbjct: 231 VEGVGITCLSDFVTDRDRAAGTLVPVLAAQMLEVYQPIHAVYY 273


>gi|163852937|ref|YP_001640980.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|163664542|gb|ABY31909.1| LysR substrate-binding [Methylobacterium extorquens PA1]
          Length = 307

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 2/186 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA+  SF+ AA  L +  SS+SR+IS  E  VG++L  R  R L LT  G    
Sbjct: 10  MALFVEVAKQKSFSKAAATLGMPISSLSRRISDFEQMVGLRLLDRTTRKLALTSYGEAYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGNLKEFLLLYPDIQIQL 126
              S +  + +     L   +  PSG LRI    D    + L   + EF  L+  I + +
Sbjct: 70  AQASRLVEEAQQAFDNLVAEAKGPSGFLRIVAPPDFWVLHHLSQIVTEFSELHEHIHVHV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L    ID+  D  D A+ + +P + +SLI RK+  +    +A+P YL++C  P   Q+L
Sbjct: 130 DLKPSAIDLVGDNYDLAVTIEEP-RETSLIMRKVAEVRNGLFASPAYLRDCGWPKEPQDL 188

Query: 187 DKHNLI 192
             H+ I
Sbjct: 189 RDHSAI 194


>gi|170719952|ref|YP_001747640.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757955|gb|ACA71271.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 338

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 128/290 (44%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 32  ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 91

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 92  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFVTPQLSHFVDAYP 151

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +    
Sbjct: 152 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQDYLDDHAPI 210

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L  H  I++ D +    E   +LA +         S   +  Y + +Q    G G
Sbjct: 211 NQVSDLIGHPFISYVDDLAFSSE-LLYLANLIPNASAHLRSTSVIAQYTAALQ----GRG 265

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +  LV ++ + I  +   +    E L+   ++    ++I
Sbjct: 266 LAILPCFLAAQDARLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 315


>gi|160900024|ref|YP_001565606.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365608|gb|ABX37221.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 309

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 134/296 (45%), Gaps = 17/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +  F  V   G F  A   L + +S +SR+++ LE  +G++L  R  R L+LT+ 
Sbjct: 2   MDLNDMLYFAEVVERGGFASAGRALGIPKSRLSRRVAELEARLGVRLLQRTTRKLSLTQV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +          + E   +P G +R++  + L Q +L   + +FL   P +
Sbjct: 62  GEAYLRHCQAMRDAALAAADTVAEVQTEPRGTIRVSCPVTLAQTVLGELMPQFLQRCPLV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +++ + N+ +++  +  D A+R+R  ++ S S++ ++L        A+P  L+    P 
Sbjct: 122 HVEMQVTNRPVNLVEEGIDVALRVRPSLEDSGSMVVKRLDVARQILVASPELLERQGTPR 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVL 237
           ++ +L   + ++        ++  + L  V  P G  +   LQ    V+  L++    + 
Sbjct: 182 ALADLQHLDSMSM-----SAVDGQSSLLLVG-PEGREQRLQLQPRYVVDDLLTLKFAALA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSG+  LPDY+  +      LV ++     P   V+  +P      G   A R+F+
Sbjct: 236 GSGMCWLPDYMCHEELAEGRLVHLLPGWEPPQGIVHAVFP---SRRGLAPAVRHFL 288


>gi|24374002|ref|NP_718045.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24348462|gb|AAN55489.1|AE015687_1 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 293

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 130/284 (45%), Gaps = 23/284 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L +   V  SG F+ AAE L +  + +SR +S +E++VG+ +  R  R L LT
Sbjct: 1   MKTRSDDLEILLAVVDSGGFSAAAELLDIQVARVSRAVSKVESQVGVSILNRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +          +++  + E+      P G+LR+        + L   ++ F   YP
Sbjct: 61  EEGRQFVETIRLGLLQIQQAEEEIITRGELPRGRLRVDAASPFVFHQLVPLIRPFKQTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  +   +D+     D AIR+   +  S+L  R L    ++  A+P YL     P
Sbjct: 121 DIELELTSNEGFVDLLEKKTDLAIRIGN-LTDSTLHARPLGKSLLYIVASPDYLSRRGFP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRIS-CLQVNSYLSIMQYCVLG 238
               +L  H+ + F    PK + D  W      P+ G  R++  L  ++  ++ Q  + G
Sbjct: 180 NKSSDLIHHDSLGFS--TPKTLND--W------PLKGFTRLTPTLTSSNGETLRQLALTG 229

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           +GIA L  ++VK +     I E  + P         E + N+G+
Sbjct: 230 NGIACLSGFMVKKD-----IAEGRLIP-----LLESEKISNSGR 263


>gi|239501198|ref|ZP_04660508.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB900]
 gi|260555742|ref|ZP_05827962.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|332876330|ref|ZP_08444103.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|260410653|gb|EEX03951.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|332735481|gb|EGJ66535.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 326

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G  + 
Sbjct: 10  LKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDGKLIL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +QI   
Sbjct: 70  ERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHVAPILSKLMMLYPKLQIHFD 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+     D  IR+   I + ++I +KL +      A+P YL     P SI++L 
Sbjct: 130 TIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCASPSYLLKHGVPDSIEDLQ 188

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H+ +T  +   +      W    A+ D  +  +PR      N+   I Q  + G GI  
Sbjct: 189 THDCLTISE---RDQSSVLWKFRHASEDVSVHIKPRFVS---NNGEIIHQLAIEGHGIIF 242

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
              + V D   L+      I P +     V+  YP  LK++ KL+    FI
Sbjct: 243 RSIWDVAD--ELITGQLQHILPEYWQDADVWAVYPSRLKSSSKLQTCILFI 291


>gi|218671746|ref|ZP_03521415.1| LysR family transcriptional regulator [Rhizobium etli GR56]
          Length = 238

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 1/192 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT  
Sbjct: 9   FTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTAM 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++      ++  + E  + +L + S+   G +R++             L  F   +P +
Sbjct: 69  GTRFVETAEKMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLHRFAAQHPHL 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+   + + +S   AD ++ L +P +       KL   H+  Y +  YL        
Sbjct: 129 SLELVTIQQIMSLSRKEADLSVVLDEP-KGGLYFAEKLTDYHLQIYGSRDYLAKAPAITC 187

Query: 183 IQELDKHNLITF 194
             +L +H  +++
Sbjct: 188 RDDLLEHPFVSY 199


>gi|34497470|ref|NP_901685.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34103325|gb|AAQ59687.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 344

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 1/192 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+++ LET +G++L  R  R L+LTE G
Sbjct: 3   DLNDLLYFAKVVEHGGFMAAGRVLGIPKSKLSRRVAELETRLGVRLLQRTTRRLSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++    +  + E     +  SS +P G +R++    L + +L   L  FL L+P ++
Sbjct: 63  GQYYQHCQAMLAEAEAADEAVLHSSAEPRGLIRVSCPELLCKTMLSLVLPRFLALHPQVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  I+ S+SL+ R+L    +   A+P +L+   EP +
Sbjct: 123 VTLDSTNRRVDLVEEGVDVAIRVRNVIEDSASLVVRRLGRSRVILVASPAFLEIHGEPKT 182

Query: 183 IQELDKHNLITF 194
            + L     +T 
Sbjct: 183 PERLAALPALTM 194


>gi|13474117|ref|NP_105685.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14024869|dbj|BAB51471.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 301

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 128/290 (44%), Gaps = 17/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V+R  SFT AA +L ++Q+++S QI  LE  VG  LF R  R + LTE G +L 
Sbjct: 18  IRVFEAVSRQLSFTKAAVELAMTQAAVSYQIKVLEERVGAPLFLRRPRQIELTEAGQRLA 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              SE +  L       +  +    G L + T +    N L  +L  F + +P + ++L 
Sbjct: 78  PAVSEAFAILSQAYAAARGGA---DGLLCVTTVLTFASNWLAHHLGSFQMAHPALAVRLE 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY---LKNCREPLSIQ 184
             ++  D + +  D AIR     +   L   KL+        +P     +   +EP  + 
Sbjct: 135 TSSRLTDFAREDVDLAIR-SGSGKWPGLEAHKLLDADFTPMLSPKLAASIGGVKEPADLL 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L    ++  GD+     + F         + +   S +   +Y +     + G G+A+L
Sbjct: 194 RL---PILDPGDIW--WTQWFEMAGVHAHDLAKRPGSSMGAQAYEA--NAAIAGHGVAIL 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + K    +  L++  + V       +  YPEA +N  K++AFR+++ 
Sbjct: 247 TRALFKAELADGRLIQPFDLVGDDGHAYWLVYPEARRNVPKIRAFRDWLL 296


>gi|107028272|ref|YP_625367.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686265|ref|YP_839512.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897436|gb|ABF80394.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651980|gb|ABK12619.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 136/294 (46%), Gaps = 17/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +  +GS T AA+   LS + +   +  LE+ +G  L +R  R   ++  G   +
Sbjct: 7   MAVFVRIVETGSLTAAAQASDLSPTMVGNYLQTLESRLGAVLVHRTTRKQKVSAFGHAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   ++ T+        +P G+LR+   +      L   L ++   YP+I++ ++
Sbjct: 67  ERCVEILGLVDDTEQLALAHLKQPRGRLRVTAPVVFTNECLIPALADYYRRYPEIKLDIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+  +  + AIR+   + +  ++ R L    +   A+P Y+     P +   L 
Sbjct: 127 ATDSLADLFDEGFEAAIRIGT-LANPDVVARPLAPYRLVLCASPAYVHEHGAPATPHALG 185

Query: 188 KHNLITFGDLIPKCMEDFNWLA-----TVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
           +H+ +T+    P   E   W A     T++ P G   +S    L++++  ++ +  + G 
Sbjct: 186 EHHCLTYA--YPPRAE---WHAAQTQWTLEGPDGPMSLSVDGRLKIDNADALRRAALRGL 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+LP  +++D+     L+ IM D   P  T+   Y +  + + KL++F  F+
Sbjct: 241 GIAMLPSILIRDDIREKRLIEIMPDFAGPERTMNLLYLQERQQSPKLRSFTEFV 294


>gi|330810625|ref|YP_004355087.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378733|gb|AEA70083.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 299

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 126/286 (44%), Gaps = 12/286 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F ++   G  + A  ++ LS +S+S +++ LET  G  L  R  R ++LT++G  L
Sbjct: 5   NLELFLLIVEKGGLSAAGREVGLSPASVSERLATLETYYGATLLNRTTRAISLTDEGKLL 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +       ++  +   SG +R++   DLG+  +   L  FL  +PD+ + L
Sbjct: 65  VEGARRLLAEAGELHSSIRAGTQTLSGPIRMSAPQDLGRQYIDPILSRFLDEHPDVSLDL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+     D AIR    +  SSL  R L        AAP YL     P    EL
Sbjct: 125 DLGDGYVDLVSQGLDFAIRY-GALADSSLRARPLGENRRVVCAAPTYLARHGTPTHPTEL 183

Query: 187 DKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  +     I    E  F+    V R + + R      N    + Q+C+ G GI+L  
Sbjct: 184 TRHECLVMRLGINTAREWTFSRRGEVHRVLVQGRRIA---NDGGLVRQWCLEGHGISLKS 240

Query: 246 DYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAF 286
            + V+D+    R++E  + P FT     +   YP A     +++A 
Sbjct: 241 IWDVRDDLKSGRLVE--LLPEFTAGSTLLQIVYPTARVQPKRVRAL 284


>gi|332717082|ref|YP_004444548.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325063767|gb|ADY67457.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 308

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 20/292 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VAR GSF+ AA++L L+Q +ISRQ+  LE ++G++LF R ARG++LT +G  
Sbjct: 13  SALAAFDSVARLGSFSAAADELALTQGAISRQVMSLEEQLGVRLFERGARGVSLTTEGGA 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +    ++    +++     K  G  L +A     G   L   + +F+  +P+I I
Sbjct: 73  YAKSIAAALGEIRAASLQIM---TKTHGNTLNLAMLPTFGTRWLLPRIPDFVSSHPEITI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
                    D   +  D AI + +   P   S+ +  ++V        +P +LK    P+
Sbjct: 130 NFATRIGQFDFEREQLDMAIHIGQADWPGAESTFLMHEMVA----PVCSPEFLKA--HPV 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E D   L     +  +     +W  ++   +  P+   ++   + S+ Q C+ G G+
Sbjct: 184 EKGE-DIAGLPLL-HMASRPGAWSHWFESLGHSLALPQ--GMRFEQFSSVAQACIAGLGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL+P +++ +   +  LV+  +       + Y   P +  N   +  FR+++
Sbjct: 240 ALMPLFLIDNELKSRQLVKAYDHQAKSPSSYYAVAPLSRANHVPVVLFRDWL 291


>gi|294651858|ref|ZP_06729149.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822247|gb|EFF81159.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 311

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 10/275 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D    FY+V + G F+ A+E  H+S+S +SR+I  LE +  + L  R  R   +TE G 
Sbjct: 5   FDDFHYFYLVVKHGGFSAASEAEHISKSKLSRRIIELENKFNVSLIQRTTRHFKVTELGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +V  ++E  +  L +   +P G ++I+    +    ++  L EFL  YP ++I
Sbjct: 65  EFYEECCKVIAQVECAENVLLKQKSEPQGLVKISCPPLMMHFQIRKLLNEFLKAYPKVEI 124

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L ++ +D+  D  D AIR   +P + SSLI R ++       AAP  L+  +     
Sbjct: 125 ALELTSRRVDLMHDDIDIAIRTSFEPNEDSSLIVRDVIQTEHCLVAAPELLQG-QHIHHY 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            EL  +  +  G  I K  + F  L  V  D+ +  P    ++ N    +      G GI
Sbjct: 184 SELSHYPSVALG--IQKS-QYFWHLCHVSDDKSVDVPYTPRVRSNDLAGVYYAVSDGLGI 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           A LP   V+   +   L+ I+ +  +   TV   Y
Sbjct: 241 ADLPYLTVQADIEKGKLIHILPEWKSNRGTVQLVY 275


>gi|238562707|ref|ZP_00440010.2| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|254184673|ref|ZP_04891262.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254194115|ref|ZP_04900547.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254202862|ref|ZP_04909224.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254208201|ref|ZP_04914550.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|147745907|gb|EDK52985.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147750888|gb|EDK57956.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|169650866|gb|EDS83559.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184215265|gb|EDU12246.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|238522116|gb|EEP85562.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
          Length = 307

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 125/289 (43%), Gaps = 13/289 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  +  LE EVG  L  R  R L +TE G
Sbjct: 14  NLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEVGASLVVRTTRRLNVTEAG 73

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    ET    +   +    G LR++  +D G  ++   L      +P ++
Sbjct: 74  RAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPALE 133

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P S 
Sbjct: 134 IELQCDDRVVDLVRDNLDVAIRLGR-LADSNHRAAKLGGFERWLVASPAFVARHGAPASP 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240
           + L     +    +    +E  N  A  +R      + C +    N+  +     + G G
Sbjct: 193 EALGALPYVMLSTVPRTTLELAN--AHGER----ASVRCRRAFASNTATACRAAVLAGGG 246

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +   +   D+     LVR++     P   ++  +P A   + K++A 
Sbjct: 247 FGVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRAL 295


>gi|157371399|ref|YP_001479388.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323163|gb|ABV42260.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 316

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 102/191 (53%), Gaps = 3/191 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  SGSF+ AA +L  S S+ SR ++ LE  + ++L +R  R L L+EQG ++
Sbjct: 17  EMAVFVQVVESGSFSAAARRLGTSPSAASRSVAKLEQALALQLLHRTTRKLRLSEQGEEV 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +     +        +V+P G + I+    +G+ +L  ++ EFL  YP + ++L
Sbjct: 77  FLRCRSMLDAANSVMAFSGRGAVEPEGLVSISVPKAVGRFVLHPHIPEFLRRYPKVDVRL 136

Query: 127 ILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L+++ +D+  D  D A+R+  +P  S  LI R+L+TI     A P YL     P   Q+
Sbjct: 137 RLEDRYMDLIDDRVDLALRITERP--SPGLIGRQLMTIEHLLCATPGYLAQHGTPQHPQD 194

Query: 186 LDKHNLITFGD 196
           L +H+ I  G+
Sbjct: 195 LAQHSCIYLGE 205


>gi|27379241|ref|NP_770770.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27352392|dbj|BAC49395.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 346

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 15/246 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD L++F   A+  SF +AAE+L L+ +++ R+I  LE  +  KLF R   GLTL+++G+
Sbjct: 23  WDDLKLFLACAKYKSFRNAAEELGLTSTTLMRRIDRLEESIDCKLFLRDQSGLTLSDEGT 82

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +    + +             SS   SG +R+A T   G   +   L +F   Y  I +
Sbjct: 83  AMIADVAHMERHAFNVFRRASRSSNDTSGTVRVAVTEGPGNFWILPRLIDFQKTYRKITV 142

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L    +  D++   +D AI+L  P  +  LI  KL  +H++ + +  Y      P ++ 
Sbjct: 143 DLRCAMEQADVARLESDIAIQLEPPT-NPDLIVAKLGRLHIYPFVSKEYESLYGLPATLA 201

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           EL  H +I      P+ ++D  +     L T++  +G      ++ NS + ++     G+
Sbjct: 202 ELKNHRIIK--QSAPQ-VDDTAYARVLGLETLEGIVG------IKTNSSVGVLYAVERGA 252

Query: 240 GIALLP 245
           GI  LP
Sbjct: 253 GIGFLP 258


>gi|254248275|ref|ZP_04941595.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124874776|gb|EAY64766.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 322

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L+    E + + ++PSGK+RI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAELDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  E
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTPQTPDE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L  H  +          E   W   ++R  GE  +     +  QVN   ++      G G
Sbjct: 185 LPNHVCLRLDTPASPAGE---W--RLERSDGEEAVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|148549237|ref|YP_001269339.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513295|gb|ABQ80155.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 309

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 133/296 (44%), Gaps = 14/296 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V  +GS    A  L LS +++S+ ++ LE+ + ++L  R  R + LT  G++
Sbjct: 5   NAIRCFIKVVEAGSIAAGARILGLSPAAVSQNLARLESHLQVRLLSRTTRSMALTPSGAQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   L   +  +     +P G+L IA+T   G+++L   +  F   YP + I+
Sbjct: 65  YYERVKHIERDLALAEQAVTTPDSEPQGRLCIASTSAFGRHVLAPLIPAFSARYPLLSIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+  ++ ++ + +  D ++R+  P     L+ R++  I     A+P YL++   P + + 
Sbjct: 125 LVTTDRRVNHAREDVDVSLRI-APQLEDQLLARRIARIPFICCASPGYLQSAGVPATPEA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALL 244
           L  H  + F    P       W    D    E     + ++  + ++ Q  +   GI  L
Sbjct: 184 LRGHRCLVF--RYPVDGRFLRWGFMRDGLRFEAEFGTVLISDDIDALTQMALHDGGITRL 241

Query: 245 PDYIVKD---NPNLVRIME-------DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++IV+    +  LV + E          T    +Y C  +    T K++AF +++
Sbjct: 242 AEFIVRPHLASGALVPLFEYCDSSQAYAQTEPMDIYLCLADRFAMTTKVRAFMDYL 297


>gi|149917385|ref|ZP_01905883.1| regulatory protein, LysR:LysR, substrate-binding [Plesiocystis
           pacifica SIR-1]
 gi|149821722|gb|EDM81118.1| regulatory protein, LysR:LysR, substrate-binding [Plesiocystis
           pacifica SIR-1]
          Length = 303

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 116/249 (46%), Gaps = 17/249 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   G FT A   L + +S +SR +  LE  +G++L  R +R   +TE G    R  
Sbjct: 12  FVHVVEQGGFTAAGRALGVPKSRLSRHVQQLEARLGVRLLQRTSRQFVVTEVGQVFLRHA 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             V  +++  + E++  +   SG++R++ ++ + Q  L   L  FL   P + +   + N
Sbjct: 72  RAVLDEVDAAEAEIKRQTNSLSGQVRLSCSVGMAQFALGEILARFLADNPKVDVIQNVTN 131

Query: 131 KDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+     D A+R    P+  SS +QR++     + +A+P YL++   P S  +L  H
Sbjct: 132 QPLDLVEARIDIALRGHAGPLPDSSFVQRRVARTPWYLFASPGYLEDAGVPDSPDDLQHH 191

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVLGSGIA 242
             +  G   P+  +   W  ++  P G        PR+     +   ++ +  + G G+ 
Sbjct: 192 AGMKVG-WKPELGQ---W--SLRGPGGARATIPFRPRLCS---DDMGTLERAAIEGLGVV 242

Query: 243 LLPDYIVKD 251
            LP Y+ ++
Sbjct: 243 ALPGYVCRE 251


>gi|323495684|ref|ZP_08100754.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323319151|gb|EGA72092.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 302

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 131/260 (50%), Gaps = 11/260 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSF+  A++L +S SS+SR I+ LE+ +  KL  R  R + L+  G ++
Sbjct: 12  EMAIFVNVVESGSFSQTAKKLGVSPSSVSRSITRLESALEEKLLERTTRQMRLSSTGQEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           + + S++ +  +      Q      SG LR+A    L + +L   + +F+  YP++ +QL
Sbjct: 72  YSLCSDMMNSAKMAVSAAQVDKTDVSGSLRVAAPKALSRQVLMPFILDFIDDYPNVSLQL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            + +  ID   D  D  I +  KP++   LI + L    +   A+P Y++    P+  Q+
Sbjct: 132 KVADHYIDPIGDEVDIIIMITDKPME--GLIAKPLGHCRLVLCASPEYIEQYGMPIHPQD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244
           +  HN +  G+  P+   D  W  T +       ++   + ++  I +  VL G G+++ 
Sbjct: 190 ISGHNCLCLGEN-PR---DRVWEFTNNNKKVSINVNGSFIVNHSEIRREAVLRGVGLSVF 245

Query: 245 PDYIVK---DNPNLVRIMED 261
           P++ ++   D+  ++ ++ D
Sbjct: 246 PEFAIQSYIDSGQVIEVLRD 265


>gi|310819352|ref|YP_003951710.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392424|gb|ADO69883.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 310

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 118/279 (42%), Gaps = 36/279 (12%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD LRVF  VA +GS + AA  L LSQ ++ R++  LE   G++LF R +  + LTE G
Sbjct: 7   NWDDLRVFMAVAETGSLSAAARHLQLSQPTVGRRLRALEESAGVRLFDRVSNRIELTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++ RV + +    +  +  L          +RI  T  +   L +  L E +     I 
Sbjct: 67  REIERVAAPMRAAADAVERRLGGLVTGEREPVRITATGSVAFFLTR-FLPELMARTEGIP 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA---APHYL------ 174
           I L    + ++++   AD AIR+R+      L+ RKL  +    Y    AP  +      
Sbjct: 126 IALSSTKEPLNLARREADVAIRMRRLPVDGDLVSRKLAKLRFSIYGPAEAPARMSIIGLP 185

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
           K  R P     LD                  +W A   RPI       L+++      Q 
Sbjct: 186 KTGRRPSQSGFLD------------------DWAA--GRPI------SLRLSDVFLRYQA 219

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
              G G++LLP ++   +  LVR++      +  VY  Y
Sbjct: 220 VRSGRGVSLLPCWLGDGDSELVRLIPPPPELAEDVYCLY 258


>gi|167625469|ref|YP_001675763.1| DNA-binding transcriptional regulator DsdC [Shewanella halifaxensis
           HAW-EB4]
 gi|167355491|gb|ABZ78104.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 314

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 6/177 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S+   KL  F VVAR  SF+ AAE+L +S S++S +I+ LE E+G KLF R  R + LTE
Sbjct: 16  SYQLAKLHTFEVVARHQSFSLAAEELCVSPSAVSHRITALENELGFKLFSRFHRRIELTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     +    L     E++   V  SGKL + +   + Q  L   + +F   YP 
Sbjct: 76  DGKRLFSKLKDSLKSLNQEVFEIKNQEV--SGKLTVYSRPSIAQCWLVPKIADFCRQYPA 133

Query: 122 IQIQLILDNKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
           I I ++  N++++ +  + D AI    R R  +    L+   ++ +    YAA H L
Sbjct: 134 ISINILTGNENVNFNSFHIDLAIYYDNRPRSKLFCQHLMDETIMPVCSPEYAAEHDL 190


>gi|327190409|gb|EGE57505.1| transcriptional regulator protein (activator), LysR family
           [Rhizobium etli CNPAF512]
          Length = 289

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 136/299 (45%), Gaps = 28/299 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L ++Q+++S+Q+  LE  +G+ LF R  RGL +T +G  
Sbjct: 9   NGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKRLEKRLGVALFQRLPRGLKITAEGEA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    S  + ++ TT   ++   V+    L +  T  +G   L   L +F   +P I ++
Sbjct: 69  LLPTVSASFDQMATTLDRIEAGQVRELLFLGVVGTFAVG--WLLPRLADFQRRHPFIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +N  +D + +  D AIR                +   H   A H  +     L I E
Sbjct: 127 ISTNNNRVDPAAEGLDFAIRFG--------------SGSWHGTEAQHLFEAPLSALCIPE 172

Query: 186 LDKHNLITFGDLIP-------KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L   +L T  DL         +  E   W A    P      + +  +S +++M+  + G
Sbjct: 173 L-ADDLRTPADLAGVTLLRSYRADEWSTWFAAAGVPPAAQVNAGIVFDSSVAMMEAALQG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKN---TGKLKAFRNFIFLKA 294
            G+AL P  +   + +   I++   TP+ ++   +   L++   T  ++AF ++IF++A
Sbjct: 232 LGVALAPPSMFSRHLSSGAIVQP-FTPTISLGSYWLTRLQSRPVTPAMRAFSDWIFVQA 289


>gi|293604850|ref|ZP_06687247.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292816678|gb|EFF75762.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 303

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 132/295 (44%), Gaps = 19/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ AAE L + +++++  +  +E  +G +L  R  R + LT  G 
Sbjct: 4   FQEMQVFVRIAERRSFSQAAEDLRIPRATVTNLVKRMEKRLGARLLERTTRQVRLTHDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   LE        ++  P G LR+     L +  +   L  FL  YPDI +
Sbjct: 64  TYYQRCVRLLADLEEADGAFLNTA--PKGLLRVNAQGTLAKYFVMPGLPAFLERYPDIVL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  D++ +D+  +  DC +R    +Q SSL  R++  +     A+P YL     P S+ 
Sbjct: 122 HLGEDDRLVDLVREGVDCVLR-SGALQDSSLAGRQIALMPQVTVASPAYLARFGVPASLD 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238
           +L  H  + +     G  +P    DF     VD R +     S + V+         + G
Sbjct: 181 DLAAHRAVDYISSATGRALPL---DF----MVDGRNVTARPASVVSVSGAELYTSAALAG 233

Query: 239 SGIALLPDYIVKDN--PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
            G+A +P Y V+       +RI+   + P    V   YP+  + + +++ F  ++
Sbjct: 234 LGLAQVPRYRVERELAAGHLRIVLPAMPPEPMPVSVLYPQNRQVSARVRVFTQWL 288


>gi|238761893|ref|ZP_04622867.1| LysR-family regulatory protein [Yersinia kristensenii ATCC 33638]
 gi|238700007|gb|EEP92750.1| LysR-family regulatory protein [Yersinia kristensenii ATCC 33638]
          Length = 308

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 131/302 (43%), Gaps = 31/302 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T +G+  +
Sbjct: 7   MRIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITAEGTLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E          ++P GK+RI     L +N++   L +F   YP I + L 
Sbjct: 67  HRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPVLSDFYQRYPHITLILG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  ID+  +  DC +R   P +   L  R +        A+P YL+    P+S+ +L 
Sbjct: 127 ANDSTIDLLREGVDCVLRAWLP-RDEQLAARNIGQQPQITCASPAYLEKYGVPMSLDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRI--SCLQVNSYLSIMQYCVLG 238
            H  + +          F+ L   D P+        E R+  S L V+   + +   V G
Sbjct: 186 GHQAVGY----------FSQLNNRDYPLEFIYQGKVENRVLPSILSVSGADAYIAAGVAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+   P   ++       L+ ++  +  P   ++  YP      G+  A R  + +   
Sbjct: 236 LGLIQAPTTGIQHQLAQGELIEVLSHLPPPVMPLFIMYP-----PGRFLAPRVRVLI--- 287

Query: 296 DW 297
           DW
Sbjct: 288 DW 289


>gi|227356565|ref|ZP_03840952.1| LysR family transcriptional regulator [Proteus mirabilis ATCC
           29906]
 gi|227163321|gb|EEI48248.1| LysR family transcriptional regulator [Proteus mirabilis ATCC
           29906]
          Length = 301

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 129/279 (46%), Gaps = 8/279 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  F  V   G F+ AAE L + +S +SR+I+ LE  + + L YR  R   +T
Sbjct: 1   MKYDLNDLYYFVKVVEFGGFSQAAETLGIPKSKLSRRIADLEERLKVSLIYRSTRQFHVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   ++    V  + E  Q  +  +   P G ++++  + L Q  +Q  L +F+  YP
Sbjct: 61  KIGQTFYQQCKNVVEQAEIAQEVICSAQGHPHGTIKLSCPVALLQIYIQDILVDFMAKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI IQ++  N+ +D+  +  D A+R+R  P+  S L  + L        A P        
Sbjct: 121 DINIQILAINRPVDVINEGLDLALRVRALPLDDSGLTMKILGYSRRVLVANPLLFATNSA 180

Query: 180 PLSIQELDKHNLITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P S ++L  + ++   +   +  +   +   TV      P+++   V   +++ +  + G
Sbjct: 181 PDSPEQLADYPILANSEHSQQYTLTLTHNDGTVSTQHVTPKLATTDV---MTLYKATLKG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            GI  LP  +V+    + +LV ++     P   ++  YP
Sbjct: 238 LGITRLPLSVVEKELTDGSLVEVLPQWRFPKDVIHAVYP 276


>gi|167906714|ref|ZP_02493919.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|226197960|ref|ZP_03793532.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225929836|gb|EEH25851.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 335

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+ G 
Sbjct: 4   FQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   LE  +   + ++  P G LR+     L +  +   L +FL  YP I++
Sbjct: 64  AYYRRCVRLIADLEEAEGAFRAAA--PRGLLRVNLQGTLARYFVVPALPDFLARYPGIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP  + 
Sbjct: 122 HIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  + +  +     +      TVD  + E R+ + + V          V G GI  
Sbjct: 181 ALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQ 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++
Sbjct: 239 VPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWL 288


>gi|161619037|ref|YP_001592924.1| LysR family transcriptional regulator [Brucella canis ATCC 23365]
 gi|225627561|ref|ZP_03785598.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|254701833|ref|ZP_05163661.1| LysR family transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|254710166|ref|ZP_05171977.1| LysR family transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|254714165|ref|ZP_05175976.1| LysR family transcriptional regulator [Brucella ceti M644/93/1]
 gi|254717600|ref|ZP_05179411.1| LysR family transcriptional regulator [Brucella ceti M13/05/1]
 gi|256031661|ref|ZP_05445275.1| LysR family transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256159808|ref|ZP_05457548.1| LysR family transcriptional regulator [Brucella ceti M490/95/1]
 gi|256255063|ref|ZP_05460599.1| LysR family transcriptional regulator [Brucella ceti B1/94]
 gi|256369514|ref|YP_003107024.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260168794|ref|ZP_05755605.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99]
 gi|260566376|ref|ZP_05836846.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40]
 gi|261219433|ref|ZP_05933714.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261222253|ref|ZP_05936534.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261317721|ref|ZP_05956918.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261321929|ref|ZP_05961126.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261752391|ref|ZP_05996100.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261758276|ref|ZP_06001985.1| bacterial regulatory protein LysR [Brucella sp. F5/99]
 gi|265988752|ref|ZP_06101309.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265998217|ref|ZP_06110774.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|294852331|ref|ZP_06793004.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|161335848|gb|ABX62153.1| transcriptional regulator, LysR family [Brucella canis ATCC 23365]
 gi|225617566|gb|EEH14611.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|255999676|gb|ACU48075.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260155894|gb|EEW90974.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40]
 gi|260920837|gb|EEX87490.1| transcriptional regulator [Brucella ceti B1/94]
 gi|260924522|gb|EEX91090.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261294619|gb|EEX98115.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296944|gb|EEY00441.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261738260|gb|EEY26256.1| bacterial regulatory protein LysR [Brucella sp. F5/99]
 gi|261742144|gb|EEY30070.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|262552685|gb|EEZ08675.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|264660949|gb|EEZ31210.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|294820920|gb|EFG37919.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
          Length = 310

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 128/300 (42%), Gaps = 24/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VAR  SF+ AA++L L+Q ++SRQ++ LE ++G  LF R +R + L+E G  
Sbjct: 13  SALAAFDAVARHESFSAAADELSLTQGAVSRQVASLEEQLGAALFDRTSRNVVLSEAGRV 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        +      LQ  S      L +A     G   L   +  F+  YP I + 
Sbjct: 73  YLQAIGPALASIRAA--SLQVMSQMRGTTLNLAFLPTFGTRWLIPRIPRFVAQYPHIILN 130

Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKN--CRE 179
                   D   +  D AI + +P     + + L+   +  +      +P +LK+     
Sbjct: 131 FATRIGQFDFDREGLDAAIHIGQPDWPNAECTFLMDETVAPV-----CSPAFLKDHPVTS 185

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  +  L   N+ +     P   E  +W  ++   I  P    ++   + ++ Q CV G 
Sbjct: 186 PHDLLRLPLFNMAS----RPGAWE--HWFRSLG--ITTPVPGGMRFEQFSNVSQACVAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L+P ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 238 GMGLMPLFLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEVRN 297


>gi|84390428|ref|ZP_00991439.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84376688|gb|EAP93564.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 310

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 125/259 (48%), Gaps = 11/259 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G  ++
Sbjct: 13  LASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEKALSVKLFERTTRTLIITQAGQLVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              S V        +EL  S   +P+G + +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 73  D-QSVVMINAAQQAVELSTSDHTEPAGSITVAAPEAFLNSVLQPFVVPFLNQYPEIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DIDI     D A RL  KP    SL+ ++L   ++   A+P YL     P    E
Sbjct: 132 RAADGDIDILRQGIDIAFRLTDKP--DESLVLKELGKTNLVLCASPDYLDAKGIPHHPTE 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+ +   +     + DF      D     P      VN     ++    G G+ +  
Sbjct: 190 LSEHDCLYLAETDKDHIWDF---LKDDEFYTVPVSGRYAVNHSQMRLKGVKEGLGVGIFH 246

Query: 246 DYIVKD---NPNLVRIMED 261
           D++++D     ++V+++ED
Sbjct: 247 DFVIQDALAEGSVVQVLED 265


>gi|120598053|ref|YP_962627.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120558146|gb|ABM24073.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
          Length = 313

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 28/290 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT  G +
Sbjct: 5   EAAKVFVTIVERGSMISAANALDMSRSMVTRYLSEMEDWSGARLLHRSTRSLSLTPAGEQ 64

Query: 66  L----HRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +    HR+      +L      +  + V  P G LRI+ +  +   +L   ++++L  YP
Sbjct: 65  VLDYCHRLL-----ELANEVPAVSHAGVTIPRGLLRISCSQFMAHQILAPVVRQYLASYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              +   + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      
Sbjct: 120 QASVNFHVSSQTVDLVAERIDLAIRITNELD-PNLIARRLGECESVVCAAPSYLAARAAV 178

Query: 181 LSIQELDKHNLIT---FGDLI---------PKCMEDFNWLATVD--RPIGEPRISCLQVN 226
           L  ++L +HN +T   FGD++          K  +  N  + ++  +    P       N
Sbjct: 179 LHPEDLTQHNCLTYSYFGDVMWRFYQTDVGAKQAQALNPESKLNQGQAFNVPVNGNFSAN 238

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
             + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y
Sbjct: 239 DSMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVY 288


>gi|297580054|ref|ZP_06941981.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535700|gb|EFH74534.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 312

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +PSG L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMLNAAQQA-IEISSSEHAEPSGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P+   +
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPVHPTD 189

Query: 186 LDKHNLITFGD 196
           L +H+ +   +
Sbjct: 190 LAEHDCLYLAE 200


>gi|262403701|ref|ZP_06080259.1| transcriptional regulator [Vibrio sp. RC586]
 gi|297580434|ref|ZP_06942361.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|262350205|gb|EEY99340.1| transcriptional regulator [Vibrio sp. RC586]
 gi|297536080|gb|EFH74914.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 313

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 138/297 (46%), Gaps = 15/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G  
Sbjct: 5   NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+  +P++ ++
Sbjct: 65  FLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIARHPNVTVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  D+  +  D AIR  +P  S+ +      +      A+P YL      L   +
Sbjct: 125 LDLSDRLTDMYANPVDIAIRYGQPADSNLVAMLLCDSNERVLCASPEYLAAHPPILHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + F  ++   + +  W+ + +   GE     +Q N   +    + +  V G GI
Sbjct: 185 LQHHNCLCF--MLADTLHN-KWILSRN---GETHSVVVQGNPACNDGEVVHRLAVKGKGI 238

Query: 242 A--LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A   L D I +D  +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K 
Sbjct: 239 ANKSLMD-ISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREKG 294


>gi|152979205|ref|YP_001344834.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150840928|gb|ABR74899.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 309

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 135/296 (45%), Gaps = 13/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D+  L  F  V  + SF+  A Q +++ S +SR I  LE ++  + FYR+ R +T TE
Sbjct: 6   STDFRTLYFFLRVLDTQSFSEVARQENVATSVVSRAIRQLEDQLQQQFFYRNTRAVTPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +    Q +L E   +PSG +R+   +  G+  +  +L      YP 
Sbjct: 66  AGLLFAEDVRVMMEQFNQAQRKLHERKQEPSGIVRLNAPVVFGRRHIAPHLPALAEKYPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+L +  I+  ++  D   R+   + +SS+  + +     +  A+P YL     P 
Sbjct: 126 LDVNLMLTDDYIEPHIEPTDIIFRISS-LTNSSMHAKIIAKQRHYIVASPAYLAKYGIPK 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
               L++H  I + +     +    WL   +    +  + + L  N+  +I   C  G G
Sbjct: 185 KPVCLEQHRCIIYRN----NLGINRWLIKENGQWVQQNVPAVLTTNNGETIYTACKQGLG 240

Query: 241 IALLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +A+LPD+ V +   +  LV+++E     + T   T+   YP+   N+  ++A  +F
Sbjct: 241 LAMLPDWSVYEGLRSGELVKVLEHYQTAIHTEQRTIAMLYPDMRHNSLNVRAVLDF 296


>gi|330876846|gb|EGH10995.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 294

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 123/285 (43%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L LT  G     
Sbjct: 8   RVFIAINERGSLIAAAETLDMSRAMVTRYLAQMEGWAGARLLHRTTRKLGLTAPGQATLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G +RIA +  L Q +L   +  +L  YP   + L +
Sbjct: 68  RCQQLLELADAVPLAADTQVDEPRGMVRIACSQSLAQAVLAPAVTAYLQRYPGTSVDLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   +LI R L        A+P YL     P   QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQL-DPNLIARPLGHCDSQVCASPAYLAAHGTPSRPQELSA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E  +    +  P+G      L  N  + +++    G+GIAL P + 
Sbjct: 187 HNCLTYSYFGKSLWEFTHQHTQLSVPVG----GNLSANDSVVLLEAAAAGAGIALQPVHS 242

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V     +  L+ +M D    +  +Y  Y      +  L+   +F+
Sbjct: 243 VAPLIASGKLIALMPDYQPRALGIYAIYTSRHHQSATLRTLLDFL 287


>gi|260778971|ref|ZP_05887863.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605135|gb|EEX31430.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 299

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 135/296 (45%), Gaps = 16/296 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DK+  F  V R+GS + A+   +LS S+ SR +  LE   G+ L +R  R LT T+ G  
Sbjct: 3   DKMAFFVYVIRTGSISAASRHFNLSVSAGSRWLQELENHFGVPLCHRSNRLLTATQAGQT 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    S +    E    +L++      G + IA T     + L   + +++   PD+   
Sbjct: 63  LFDEFSPLVDNAERISRKLEDFQASDKGHINIAVTPVYANHFLIDKIADYITENPDVTFN 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS-----LIQRKLVTIHMHAYAAPHYLKNCREP 180
           L +    +D + +  D  I      Q        L++R+++       A+P YL+   EP
Sbjct: 123 LNVTPWALDHASE-CDLMISANASFQGYREKDLLLVKREVMQCPFIVVASPDYLQRHGEP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
              Q+L +H+      L  + +   N W+   D    + ++   ++VN    +++  +  
Sbjct: 182 QHPQDLTQHHC-----LFARTLTGSNDWIFRQDAETLQMKVPKSVEVNDSDLLLKAALKS 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +GIA LP ++V++   N +LV +MED  T  +++   Y    K +  +  F++F+ 
Sbjct: 237 TGIAYLPQFVVEEAISNKSLVPLMEDYETSIWSLNLYYHPPQKASPLVTRFKDFLL 292


>gi|157369422|ref|YP_001477411.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321186|gb|ABV40283.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 303

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 129/292 (44%), Gaps = 10/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +LR F V+   GSFT AA QL +S S++S+    LET +G++L  R  R + LT+ G
Sbjct: 5   DFAELRAFAVIVEHGSFTRAAAQLGISASALSQTQRNLETRLGVRLLNRTTRSVALTQAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    S    ++E    +     ++P+G LR+  +     + L   L  F   YPDI 
Sbjct: 65  ELLLARLSPAMAEIEAAVTQTAALRLQPAGTLRLNASGLAAIHYLAPLLAPFNAHYPDIV 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L ++++ +D+     D  +RL + ++   +         M   A+P YL     P + 
Sbjct: 125 VDLSVEDRLVDMVAAGFDAGVRLHERLEKDMVAVALGGEQRMCVVASPAYLARYGTPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
             L +H  +      P     + W    +R   +  I+    L V+    +++    G G
Sbjct: 185 DALRQHRCLN--TRWPTNGSIYRW--EFERGGEKLEIAVEGPLIVDEPQVLVRAAADGLG 240

Query: 241 IALLPDYIVKDNPNLVRIME--DVITPSFT-VYFCYPEALKNTGKLKAFRNF 289
           IA L +  V +  N  R++      TP F   Y  YP   +    L+AF +F
Sbjct: 241 IAYLFESQVAEALNDGRLLPLLAAWTPPFPGFYLYYPANRQMPRPLRAFIDF 292


>gi|78063521|ref|YP_373429.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971406|gb|ABB12785.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 310

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VAR GSF  AA +L+++  ++ +QI  LE   G+ LF R  RG+ LT++G+ 
Sbjct: 18  NALRAFDAVARHGSFAGAAAELYVTHWAVGKQIRLLEDWFGLPLFDRRPRGVVLTDEGAA 77

Query: 66  LHRVTSEVYHKLETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L    S  + +L T  + L+ ++V  + SG +R+  T+      L   L +F L YPDI 
Sbjct: 78  LLSDVSHAFERLGTAVVRLRHNTVTHRISGVVRVNVTMSFALCWLLPRLADFQLRYPDID 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV 161
           +++   ++ +    D  D  +R   P   + +I R L+
Sbjct: 138 VRVSTTSRKLRYVADAFDIGVR-SGPEHGAGVISRPLM 174


>gi|53722277|ref|YP_111262.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76817440|ref|YP_335414.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126444710|ref|YP_001062769.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126457975|ref|YP_001075720.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134283688|ref|ZP_01770386.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167819915|ref|ZP_02451595.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167922904|ref|ZP_02509995.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217418385|ref|ZP_03449892.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|242311095|ref|ZP_04810112.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254183613|ref|ZP_04890205.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254191094|ref|ZP_04897599.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254193404|ref|ZP_04899838.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254263102|ref|ZP_04953967.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254301752|ref|ZP_04969195.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52212691|emb|CAH38722.1| putative LysR family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|76581913|gb|ABA51387.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|126224201|gb|ABN87706.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126231743|gb|ABN95156.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|134244870|gb|EBA44966.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|157811741|gb|EDO88911.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157938767|gb|EDO94437.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169650157|gb|EDS82850.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184214146|gb|EDU11189.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217397689|gb|EEC37704.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|242134334|gb|EES20737.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254214104|gb|EET03489.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 335

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+ G 
Sbjct: 4   FQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   LE  +   + ++  P G LR+     L +  +   L +FL  YP I++
Sbjct: 64  AYYRRCVRLIADLEEAEGAFRAAA--PRGLLRVNLQGTLARYFVVPALPDFLARYPGIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP  + 
Sbjct: 122 HIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  + +  +     +      TVD  + E R+ + + V          V G GI  
Sbjct: 181 ALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQ 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++
Sbjct: 239 VPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWL 288


>gi|254562710|ref|YP_003069805.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254269988|emb|CAX25970.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens DM4]
          Length = 307

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 2/186 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA+  SF+ AA  L +  SS+SR+IS  E  VG++L  R  R L LT  G    
Sbjct: 10  MALFVEVAKQKSFSKAAATLGMPISSLSRRISDFEQMVGLRLLDRTTRKLALTSYGEAYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGNLKEFLLLYPDIQIQL 126
              S +  + +     L   +  PSG LRI    D    + L   + EF  L+  I + +
Sbjct: 70  AQASRLVEEAQQAFDNLVAEAKGPSGFLRIVAPPDFWVLHHLSRIVTEFSELHEHIHVHV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L    ID+  D  D A+ + +P + +SLI RK+  +    +A+P YL++C  P   Q+L
Sbjct: 130 DLKPSAIDLVGDNYDLAVTIEEP-RETSLIMRKVAEVRNGLFASPAYLRDCGWPKEPQDL 188

Query: 187 DKHNLI 192
             H+ I
Sbjct: 189 RDHSAI 194


>gi|238028822|ref|YP_002913053.1| transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878016|gb|ACR30349.1| Transcriptional regulator [Burkholderia glumae BGR1]
          Length = 307

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 129/294 (43%), Gaps = 11/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V    SF  AA QL +S ++++R +  LE  + ++L  R  R L+LTE G +  
Sbjct: 7   MRVFTRVVDLASFNLAARQLGMSAAAVTRSVGMLEAHLNMRLLNRTTRSLSLTEAGREYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  KLE  +  L  +S +P G LRIA ++      L   L  +   +P +   + 
Sbjct: 67  EGCRVIIEKLEEIESNLVRASREPRGTLRIAASMCFAAAGLGELLAAYRAQHPRVGFDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+     D      + + S++L+ R L T+     A+P YL     P     L+
Sbjct: 127 TFDTHVDMVEGGYDVCFADDRRLASATLVSRPLTTVREVVVASPAYLARHGRPAVPAALN 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246
           +H+L+T  D   +     NW  T    +           S  ++++   L   G+ALLP+
Sbjct: 187 EHSLLTVSDGAAR-----NWEFTDGDALCRIVTGHALAASGSAMVRLAALAHLGVALLPE 241

Query: 247 YIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +V  +     LV ++E   V      +   YP     + K+++F +F   + R
Sbjct: 242 PLVAGDLVRGELVALLEGYPVNGGPRGISILYPGRHYLSMKVRSFVDFAVGRYR 295


>gi|206563042|ref|YP_002233805.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039082|emb|CAR55045.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 324

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 136/296 (45%), Gaps = 23/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSF+  A+++H+S S+++R+++ +E  +G+ L +R    +TLTE G    
Sbjct: 16  MRAFVRVVETGSFSAVAKEMHVSTSTVARKVTAIEEALGVALLHRSTHSVTLTEAGHIYL 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+ + 
Sbjct: 76  ERAVTLIADLDDTLRVVAELNARPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQLDVR 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D  I   +    + ++ R L        A P YL  C  P +  +L 
Sbjct: 136 LTDNHNDLVAGGFDLDIHEGENYLDNLVVHR-LSRNDSILCATPAYLDRCGRPATPDDLK 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGIA 242
            HN + +  + P+   D  W    D   G+   S L   + ++     ++     G GIA
Sbjct: 195 HHNCLRY--VHPEG--DPRW----DLVSGDAHHSVLPAGNLVTDHSELLLDATCAGLGIA 246

Query: 243 LLPDYIVKD---NPNLVRI-----MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               ++V+D   +  L  +     +++ +T  F +Y  Y    +++ KL+  ++F+
Sbjct: 247 EFEIWLVRDLLASGQLEAVLPRYRLQNRLTGEF-IYIAYLANRRSSAKLRVLKDFL 301


>gi|169796967|ref|YP_001714760.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|301347681|ref|ZP_07228422.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB056]
 gi|301510514|ref|ZP_07235751.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB058]
 gi|301596310|ref|ZP_07241318.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB059]
 gi|332853057|ref|ZP_08434533.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332868358|ref|ZP_08438114.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149894|emb|CAM87787.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|332728872|gb|EGJ60229.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332733442|gb|EGJ64622.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 326

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G  + 
Sbjct: 10  LKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDGKLIL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +QI   
Sbjct: 70  ERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHVAPILSKLMMLYPKLQIHFD 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+     D  IR+   I + ++I +KL +      A+P YL     P SI++L 
Sbjct: 130 TIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCASPSYLLKHGVPDSIEDLQ 188

Query: 188 KHNLITFGDLIPKCMEDFNWL---ATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H+ +T  +   +      W    A+ D  +  +PR      N+   I Q  + G GI  
Sbjct: 189 THDCLTISE---RDQSSVLWKFRHASEDVSVHIKPRFVS---NNGEIIHQLAIEGHGIIF 242

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
              + V D   L+      I P +     V+  YP  LK++ KL+    FI
Sbjct: 243 RSIWDVAD--ELITGQLQHILPEYWQDADVWAVYPSRLKSSSKLQTCILFI 291


>gi|78063070|ref|YP_372978.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970955|gb|ABB12334.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 310

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 121/275 (44%), Gaps = 17/275 (6%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L ++  + S+Q++ LE  + ++L  R  RG+ LT +G +L         +LE+    L
Sbjct: 24  RELGMTPQAASKQVAALEALLNVRLLQRSTRGIVLTLEGERLLAQCRGAVGELESALRML 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
            +     +G +R+A    L +  L   L EF    P +  +LI+ +   DI     D A+
Sbjct: 84  DDDRAPAAGTIRVAAPYSLARRFLAPLLGEFCDRQPGVTAELIVSDDMADIVEQRIDIAV 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R    +  S L+ R++  + +   A+P YL+   EP +I  L  H    F  L P+  + 
Sbjct: 144 RTGN-LPDSGLVARRVADLQLIVCASPAYLRRHGEPQTIDALRDHRCTAF--LYPRTGKP 200

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSGIALLPDYIVKDN---PNL 255
           F W   VD      R+   Q++ +++       +   + G+ I     Y V  +     L
Sbjct: 201 FPWEFLVD-----GRVDTRQIDPFIATNDIDAELDTVLSGAAIGQFFGYSVHAHIREGRL 255

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V ++   +T  + ++ C P+ +    + +   +F+
Sbjct: 256 VPLLTRHVTCRYGLHLCMPQRMHLPRRSRLLMDFL 290


>gi|146278762|ref|YP_001168921.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557003|gb|ABP71616.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 323

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 125/294 (42%), Gaps = 24/294 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            +L  F  V R+GS   AA +L L+Q ++SR + GLE ++G+ LF R  + L  T+    
Sbjct: 37  GQLAAFEAVTRTGSTAAAARELDLTQGTVSRLVQGLEEQLGVALFQRQRKRLKPTQAALA 96

Query: 66  LHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +EV   L+   +  L+ +S    G L +A     G + L   L  FL  +P + I
Sbjct: 97  Y---AAEVRRALDILGRASLRLASDPDGGVLSLAILPTFGTHWLAPRLPGFLRTHPGVTI 153

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L    K  +   +  D AI    P    +   R L    + A AAP +L     P++  
Sbjct: 154 NLATRLKPFEFEGEEFDAAIHFGSPTWPRAGHMR-LFGEGVVAVAAPEFL--AAHPVAGA 210

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
                  +   +  P+      W A        PR   +  + + ++MQ  + G G+ALL
Sbjct: 211 ADLLGLPLLTLETRPRGWT--GWFAHHGVTAAVPR--GMVFDQFATMMQAAIHGIGVALL 266

Query: 245 PDYIVKDNPNLVRIMEDVITPSF--------TVYFCYPEALKNTGKLKAFRNFI 290
           P+++    P L    E V+ P+F          +  +PE   +   L AFR+++
Sbjct: 267 PEFLA--GPALA---EGVLAPAFGGAVEGRHAYWLVWPEDRGDHPPLAAFRDWL 315


>gi|145298600|ref|YP_001141441.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851372|gb|ABO89693.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 322

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 126/289 (43%), Gaps = 11/289 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +L  F  VA   SF  AA +L+L+ S++S  +  LE  +G++L  R  R ++ T+ G
Sbjct: 9   EFGELTAFVAVAEEKSFRKAAARLNLTASTLSHALRALEERLGVRLLNRTTRTVSPTQAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +  ++ +     ++      P G++RI T       +    L++F   YPD+Q
Sbjct: 69  LALLAEIAPAFNVIAHAVKKVNAFRESPQGRVRINTPRIAADMIFLPQLQKFCHQYPDVQ 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI     D  +R+R  +Q      R     H   Y +P Y +    PL+ 
Sbjct: 129 LELATNDGFVDIISQGFDAGVRIRSDVQQDMSAVRLTADFHSAVYGSPAYFERHAIPLTP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I   ++    +  + W    D R I  P    + V++   + +  + G G+ 
Sbjct: 189 ADLQHHLCIGRREITGGSL--YRWEFEKDGRQIAVPVSGPVTVDNVSMMTRLALDGIGLV 246

Query: 243 LLPDYIVKDN----PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKA 285
                   D+      L+R++ D  +  P F +Y  YP   +    LKA
Sbjct: 247 YTAQSPEHDDLVTTGRLIRVLADGSITYPGFFLY--YPGHRQLPAALKA 293


>gi|23501964|ref|NP_698091.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|23347912|gb|AAN30006.1| transcriptional regulator, LysR family [Brucella suis 1330]
          Length = 310

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 128/300 (42%), Gaps = 24/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VAR  SF+ AA++L L+Q ++SRQ++ LE ++G  LF R +R + L+E G  
Sbjct: 13  SALAAFDAVARHESFSAAADELSLTQGAVSRQVASLEEQLGAALFDRTSRNVVLSEAGRV 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        +      LQ  S      L +A     G   L   +  F+  YP I + 
Sbjct: 73  YLQAIGPALASIRAA--SLQVMSQMRGTTLNLAFLPTFGTRWLIPRIPRFVAQYPHIILN 130

Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKN--CRE 179
                   D   +  D AI + +P     + + L+   +  +      +P +LK+     
Sbjct: 131 FATRIGQFDFDREGLDAAIHIGQPDWPNAECTFLMDETVAPV-----CSPAFLKDHPVTS 185

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  +  L   N+ +     P   E  +W  ++   I  P    ++   + ++ Q CV G 
Sbjct: 186 PHDLLRLPLFNMAS----RPGAWE--HWFRSLG--ITTPVPGGMRFEQFSNVSQACVAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L+P ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 238 GMGLMPLFLIRSEIENDQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEVRN 297


>gi|323496723|ref|ZP_08101768.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323318148|gb|EGA71114.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 297

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 125/287 (43%), Gaps = 42/287 (14%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+VF   A+  +FTHAAE ++++Q ++SRQI  LE  +G+ LF+RHARGL+LT +G + 
Sbjct: 9   QLQVFLATAQHLNFTHAAEAMNMTQGAMSRQIQTLEALIGVALFHRHARGLSLTPEGERF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E+ ++L     ++ + +   + +L   T I    + L G L EF   +PDI ++L
Sbjct: 69  VVCAEEIVNQLRKAITDVADGA--NTIRLNAPTCIT---SWLLGRLAEFHQQFPDINVEL 123

Query: 127 ILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              NK     + D  D AI   K I++ +  Q  L    +    +P       +      
Sbjct: 124 TSTNKHQSSPNFDSFDMAILYGKAIKNKTTNQVLLFEERLSPLCSPELWPEVSQTFE--- 180

Query: 186 LDKHNLITFGDLIPKCMEDFNW-------------------LATVDRPIGEPRISC---- 222
            DK   +     +   +E  +W                    AT+D+ +G  ++      
Sbjct: 181 -DKVGALAELPWLHANVEQTDWYLWLEAFAPQLKKSSRNQTFATLDQAVGAAQLGYGIAV 239

Query: 223 ---------LQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIME 260
                    L++N  +     CVL      L      + PN++R++E
Sbjct: 240 GDLVLAERDLKLNRLVQPFDECVLSGNGYYLMTPAGTEQPNILRLVE 286


>gi|160895637|ref|YP_001561219.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361221|gb|ABX32834.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 354

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 141/314 (44%), Gaps = 24/314 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +  RVF  +A + S T AAE+  +++S++SR++  LETE+G +L  R  R + LT+ 
Sbjct: 35  MDLNLCRVFIDIAEAKSLTRAAERGGMTRSNVSRRLRALETEMGAQLLRRTTRNVELTQA 94

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R    +  +L+  +  + +     SG++ +      G   L+  +  F   +PDI
Sbjct: 95  GQLLYRRCLAMMEELQRARDAIHQLRSTVSGEVGVRVPTGFGHFYLKPLILGFCREHPDI 154

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++L+++++  D+     D A+++   P+    L+  +L  +  +  A P  L+   + L
Sbjct: 155 RLRLLINDQMADLVASKVDLAVQITSAPL--DDLVATRLCDVRWNFVATPACLQALEQSL 212

Query: 182 SIQELDKHNLITFGDLIPKCMED-FNWLATVDRPIGEPRISC-------LQVNSYLSIMQ 233
                   +L+    ++P  M     WL       G+  +S        LQ   Y  +  
Sbjct: 213 GRPLRAPADLLQARLILPLAMGGRLAWLTGS----GDDGVSAALDVLPSLQSGDYRLLYD 268

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSF--TVYFCYPEALKNTGKLKAFRN 288
             + G G+ALLPDY+         LV +++ V+       +Y       + T   +AF+ 
Sbjct: 269 AVLDGLGLALLPDYVTSAALAGGTLVAVLDQVVFSGLGNAMYLVRMPDRQPTMAARAFQQ 328

Query: 289 F----IFLKARDWK 298
           F    I   A  W+
Sbjct: 329 FLREAIVTAAPSWQ 342


>gi|170738116|ref|YP_001779376.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820304|gb|ACA94886.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 322

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L+    E + + ++PSGK+RI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAELDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  E
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTPQTPDE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L  H  +          E   W   ++R  GE  +     +  QVN   ++      G G
Sbjct: 185 LPNHVCLRLDTPASPAGE---W--RLERSDGEEAVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|237507897|ref|ZP_04520612.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|235000102|gb|EEP49526.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 335

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+ G 
Sbjct: 4   FQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   LE  +   + ++  P G LR+     L +  +   L +FL  YP I++
Sbjct: 64  AYYRRCVRLIADLEEAEGAFRAAA--PRGLLRVNLQGTLARYFVVPALPDFLARYPGIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP  + 
Sbjct: 122 HIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  + +  +     +      TVD  + E R+ + + V          V G GI  
Sbjct: 181 ALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQ 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++
Sbjct: 239 VPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWL 288


>gi|146283674|ref|YP_001173827.1| transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145571879|gb|ABP80985.1| probable transcriptional regulator [Pseudomonas stutzeri A1501]
          Length = 268

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 121/268 (45%), Gaps = 14/268 (5%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +SQ ++SR +  LE  +G++L  R  R +  TE G  L RV +  + ++++    L E  
Sbjct: 1   MSQPALSRAMRQLEERLGVRLLARTTRSVAPTEAGEHLLRVVAPRFEEIDSELGLLSEFR 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
            KP+GKLR+         +LQ  L   L   PD+ I++I+D    DI  +  D  +RL +
Sbjct: 61  DKPAGKLRLTAGEHAAITILQPVLATLLPDNPDLSIEVIVDYGLTDIVAEGYDAGVRLGQ 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI-----TFGDLIPKCME 203
            +    +  R    + M    +P Y     +P+  ++L +HN I     T+G + P   E
Sbjct: 121 QVAKDMIAMRIGPDMRMAVVGSPAYFARHPQPVIPRDLMQHNCINIRMPTYGGIFPWEFE 180

Query: 204 DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIME 260
                  V R  G+     L  N+    +   + G G+A + + +V+ +     L+R++E
Sbjct: 181 KNGEELKV-RVEGQ-----LVFNNIAMRLGAALQGLGLAYMAEDLVQAHVAEGRLIRVLE 234

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRN 288
           D   P    +  YP   +++      R+
Sbjct: 235 DWCEPFSGYHLYYPSRRQSSPAFTLLRD 262


>gi|34499745|ref|NP_903960.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34105596|gb|AAQ61950.1| probable transcriptional regulator LysR-family [Chromobacterium
           violaceum ATCC 12472]
          Length = 306

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 10/260 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VAR GSF+  A +   + S+I+R+I  LE  VG  L  R  R L LTE G  
Sbjct: 8   EHLAIFVEVARGGSFSAVARRHGATPSTITRKIDMLEEFVGTNLLVRSTRALLLTEAGET 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V   L     E+   S    G LRI+     G+  +   L +    +P ++I 
Sbjct: 68  LFARGVSVLEALTDIHNEVIALSDSMYGTLRISCLPTFGKLHVLPWLADLQQRHPSMRID 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  + S++  D AIR+ K ++ SSL  +++ T      A+P YL+    P  +++
Sbjct: 128 LDLTERLTNPSVERLDAAIRIGK-LKDSSLFAKQIGTQRWVICASPDYLRQRGHPSDLED 186

Query: 186 LDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +  LI    D    C     W   V++   +   +  + + + ++ Q  + G G A L
Sbjct: 187 LRRLRLIDKLHDPHSMC-----WRRLVEKGHIDQIEAAFRCDDFEAMRQAALCGLGAAFL 241

Query: 245 PDYIVKDN---PNLVRIMED 261
           PD+++  +     L+R+ +D
Sbjct: 242 PDWVIAQDLAAGALIRLFDD 261


>gi|153832234|ref|ZP_01984901.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148871545|gb|EDL70400.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 307

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 98/190 (51%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LT+ G+
Sbjct: 4   FSDMTLFVSIVKNQGLAAAGRELGLSPATVTARLQSLEDRYGVKLLNRSTRHISLTDSGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+   E+   ++ T+  LQ  + +  G L+I+   D+G+  +   L EF  LYPD+  
Sbjct: 64  MYHQACLEIIDSVKETENLLQTGTKEVRGTLKISAPRDIGKQYISPILSEFSQLYPDVIP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L++   +++    D  IR  + +  S+LI RKL +      A+P YL     P++ Q
Sbjct: 124 YLYLNDNLSNLTESGLDIVIRYGE-LADSNLISRKLASSRRVLCASPQYLAKKGTPITPQ 182

Query: 185 ELDKHNLITF 194
           +L +H+ +  
Sbjct: 183 DLAQHDCLAM 192


>gi|16119407|ref|NP_396113.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15161935|gb|AAK90554.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 309

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 22/295 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A + SF+ AA +L ++ +++SR ++ LE  +GI+LF+R  R LTLTE G   
Sbjct: 6   NLEAFVRSAEASSFSGAARRLSITPAAVSRNVAMLERNLGIRLFHRSTRKLTLTEAGESF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +  + L+       ++  +P G L+++ ++      +   L +FL  YP ++   
Sbjct: 66  LASIGDSLNHLQGAIDGASQTKGEPVGVLKLSMSLSFAMGYVLPALPDFLARYPGVRPDW 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             D++ +D+  +  D AI     +    ++   L  +H+ A A+P Y    R P S  +L
Sbjct: 126 HFDSRKVDLIAEGFDAAIGGGFELN-PGIVSTTLAPVHVIAVASPSYFAARRRPTSPVDL 184

Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVL 237
             H  I       G +    M D           G    + L     +S    ++Q  + 
Sbjct: 185 ADHAGILMRSSNSGRIRQWMMRDAQ---------GREERALLNETIVMSDAAPMVQAAIA 235

Query: 238 GSGIALL--PDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G GIALL  PD +   ++  L RI+      + ++   Y   +    K +AF +F
Sbjct: 236 GLGIALLAVPDVLPHMESGALERILPKWYADAGSISLYYSGRVLQPLKTRAFIDF 290


>gi|53716824|ref|YP_104945.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53722987|ref|YP_111972.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76819314|ref|YP_336230.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121598134|ref|YP_990862.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124381640|ref|YP_001025342.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126447296|ref|YP_001077328.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126458518|ref|YP_001076701.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134278423|ref|ZP_01765137.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|166999114|ref|ZP_02264960.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167743854|ref|ZP_02416628.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167821041|ref|ZP_02452721.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167829405|ref|ZP_02460876.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167907797|ref|ZP_02495002.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167916158|ref|ZP_02503249.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|226196916|ref|ZP_03792494.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242313735|ref|ZP_04812752.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254176055|ref|ZP_04882713.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254185893|ref|ZP_04892411.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254263695|ref|ZP_04954560.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254359486|ref|ZP_04975758.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52213401|emb|CAH39444.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|52422794|gb|AAU46364.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76583787|gb|ABA53261.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|121225932|gb|ABM49463.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|126232286|gb|ABN95699.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126240150|gb|ABO03262.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134250207|gb|EBA50287.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|148028673|gb|EDK86633.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157933579|gb|EDO89249.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160697097|gb|EDP87067.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|225930899|gb|EEH26908.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242136974|gb|EES23377.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243064677|gb|EES46863.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254214697|gb|EET04082.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|261826422|gb|ABN00536.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 301

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 124/290 (42%), Gaps = 15/290 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  +  LE EVG  L  R  R L +TE G
Sbjct: 8   NLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEVGASLVVRTTRRLNVTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    ET    +   +    G LR++  +D G  ++   L      +P ++
Sbjct: 68  RAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPALE 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P S 
Sbjct: 128 IELQCDDRVVDLVRDNLDVAIRLGR-LADSNHRAAKLGGFERWLVASPAFVARHGAPASP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQV---NSYLSIMQYCVLGS 239
           + L     +    +    +E  N         GE   + C +    N+  +     + G 
Sbjct: 187 EALGALPYVMLSTVPRTTLELANAH-------GERASVRCRRAFASNTATACRAAVLAGG 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G  +   +   D+     LVR++     P   ++  +P A   + K++A 
Sbjct: 240 GFGVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRAL 289


>gi|315180507|gb|ADT87421.1| hypothetical transcriptional regulator, LysR family protein [Vibrio
           furnissii NCTC 11218]
          Length = 307

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 123/268 (45%), Gaps = 13/268 (4%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
           R+GSFT A E+L L+ S++ + ++ LE ++G KL +R  R LT T +G +       +  
Sbjct: 19  RTGSFTAAGERLGLTGSAVGKSVTRLEKKLGTKLLHRTTRSLTPTPEGQRYFDGWIAILD 78

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
           ++++ +  +   SV+ SG L I      G+  +   L E    +P++ + +    K I++
Sbjct: 79  EIDSLEHGVVAGSVQVSGNLNIHLPAAFGRRHVMPLLLELTKAHPNLDLSVAFSEKRINL 138

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG 195
             +  D  +R+      + LI R+L    +   A+P YLK    P  + EL +H+ I  G
Sbjct: 139 VDEGVDLVVRIGALADDADLIARRLGRQRLVVCASPDYLKKKGTPKLVTELTEHDCIVGG 198

Query: 196 DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGIALLPDYIVKD 251
               +      WL    R  G+     +      S    ++   + G G++ LP +++ +
Sbjct: 199 ----QRSNQPAWL--FRRANGDSFTQVVHGRYCFSDGDAMLSAVLDGMGVSQLPTWLINE 252

Query: 252 ---NPNLVRIMEDVITPSFTVYFCYPEA 276
              +  LV I++D       ++  +P +
Sbjct: 253 HLASGALVTILDDYAGAEMPIHAVWPRS 280


>gi|163759221|ref|ZP_02166307.1| transcriptional regulatory protein [Hoeflea phototrophica DFL-43]
 gi|162283625|gb|EDQ33910.1| transcriptional regulatory protein [Hoeflea phototrophica DFL-43]
          Length = 332

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 124/249 (49%), Gaps = 14/249 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ +RVF  VAR  SF  AAE+L +S +++ R IS LE  +G  L +R + G+ LT++G
Sbjct: 9   DWNSIRVFLAVARLYSFRKAAEELGMSVNTVRRTISRLEDILGYPLLFRESEGVRLTDEG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL-LYPDI 122
            ++     +V + +         +    +G +R+A T  LG   L   + +++       
Sbjct: 69  RRVVLAARDVENSVSDMWRVASMAERDANGPIRLAITEGLGSFWLTPRIVDYMNDTGAQN 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L    + +D+    AD +++L +P     L  ++L  +H+  +A+  YL+    P +
Sbjct: 129 RIELQCAMRSVDVLRMEADISVQLERP-NRPELKTKRLGYLHLKPFASRSYLERFGHPKN 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVL--G 238
           + ++  H ++       +  E       +D+  G P+I+   +++ +  S   Y  +  G
Sbjct: 188 VADMVNHRVVEQQTDQLRGYE-------LDKIFG-PQIANRMVRMKTNFSSAHYWAVAKG 239

Query: 239 SGIALLPDY 247
           +GI L+P+Y
Sbjct: 240 AGIGLMPNY 248


>gi|329113966|ref|ZP_08242733.1| Putative HTH-type transcriptional regulator YcjZ [Acetobacter
           pomorum DM001]
 gi|326696713|gb|EGE48387.1| Putative HTH-type transcriptional regulator YcjZ [Acetobacter
           pomorum DM001]
          Length = 305

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 125/292 (42%), Gaps = 16/292 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +L  F  VA+  SFT AA +  ++ S+IS  +  LE  +G+ L  R  R +  T  G
Sbjct: 14  NFSELLSFLAVAQERSFTKAAARRGVTPSAISHTMRLLEERLGVTLLTRTTRRVVPTPAG 73

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +    ++ ++E     L E    P G LRI  T +     L+  + +FL  YP+I 
Sbjct: 74  DYLLQNIQPLFDEIENRMSSLDEFRKCPRGNLRITVTDESLDFFLRPRIADFLKNYPEIS 133

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  D + IDI  +  D  +RL + +    +       I      +P Y KN   P + 
Sbjct: 134 LEISTDLRLIDIVDEGFDAGVRLGELVTQGMISVPVSPDIPFAVVGSPTYFKNHAIPKTP 193

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVL 237
             L +HN I  G  +P   + + W           +P+G+        N+       C+ 
Sbjct: 194 VRLQEHNCI--GVRLPTHGKIYPWRFRQKGKDLKFQPVGQ-----FICNNVFGARDACLD 246

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G G+A +P  + ++   N  L+ ++E         +  YP   +++  L  F
Sbjct: 247 GIGLAYIPKIVTEEHIQNGKLISVLEPFCPTHLGFHLFYPRHHRHSMPLSLF 298


>gi|126208266|ref|YP_001053491.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           L20]
 gi|126097058|gb|ABN73886.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 295

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 134/301 (44%), Gaps = 20/301 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  G
Sbjct: 2   DLNNLRLFVTVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTALG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+     ++H L     +      + SG LRI+T        +   + EF   YP ++
Sbjct: 62  LQLYEKVYLIFHNLTQATQDFIGEQQELSGYLRISTVS--ACEPIWAAIAEFQAEYPQVK 119

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +     ++ +D+  D  D A R+   + + ++I RK++ ++    A P +L     P + 
Sbjct: 120 VHCQATDRVLDLVEDGIDIAFRMGD-LHTENVIARKMMDLNAVLVAHPDFLARHGTPKTP 178

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240
           Q+L       +     K        AT+   +GE  +    +   N   +I         
Sbjct: 179 QDLTALPFACWARAGQKS-------ATLQ--LGEQAVKIEPIFTSNDVYAIAHQAKNAHA 229

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           I  LPDY+ +   +   LV +M D  T ++ ++  YP     +  +K F  F   FL  R
Sbjct: 230 ICQLPDYMAQELTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGFCERFLAER 289

Query: 296 D 296
           +
Sbjct: 290 E 290


>gi|116690503|ref|YP_836126.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170733844|ref|YP_001765791.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116648592|gb|ABK09233.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169817086|gb|ACA91669.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 309

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 123/288 (42%), Gaps = 12/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT  G+ 
Sbjct: 5   DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTADGAL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +      +       G+L +     + + ++   L      +P +Q+ 
Sbjct: 65  LLERGRRLLAEADELDRLFRRRDRDVVGRLNVDVPSRIARRVVAPALPSLFRRHPKLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P     
Sbjct: 125 LGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFTLINCASPDYLRECGVPEHPDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241
           L  H     G   P    +  W    D   G+     L     VN+  + +  C+ G G+
Sbjct: 184 L-AHGHWAIGYASPTTGRELGWEYCAD---GQRHTLTLPSRVIVNNAETYIAGCIAGMGL 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +P + V+    +  LV +M         V   YP     + +L AF
Sbjct: 240 IQIPRFDVEHLLASGALVDVMPGHRAEPMDVSAVYPHRRHRSRRLNAF 287


>gi|300723974|ref|YP_003713288.1| putative LysR family transcriptional regulator [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630505|emb|CBJ91170.1| putative transcriptional regulator (LysR family) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 296

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 120/255 (47%), Gaps = 7/255 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  + SFT AA+ L LS+SS+SR+I+ LE  +  +L  R  R + +TE G   ++ 
Sbjct: 3   VFARVVETLSFTEAAKSLRLSKSSVSREIAQLEVRLSTQLLNRTTRKIQVTEVGMSYYQY 62

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  + +  +  ++    +P G LR+   +  G   +   L  F+     I + L L 
Sbjct: 63  CHRILTEAQNAEHFIRNFHEEPMGSLRLIAPVSFGSQCVVPALNHFIAGNIHISVDLELT 122

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +K I++  D  D A+ + +      LI   L+ I    YA P YL+        ++L ++
Sbjct: 123 DKAINMEEDQCDIAVIIGRATPYHPLIM-PLIDITWGLYATPDYLRQFSPIDKPEDLPRY 181

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + F    P       +     +   E R S  ++N+ +++M   + G+GIA LPDY+ 
Sbjct: 182 DYLLFRG--PAHTLSLPFRKERHKLDIEVR-SRFRINNSVALMSSALAGAGIAYLPDYVT 238

Query: 250 KD---NPNLVRIMED 261
            +      LVR++ +
Sbjct: 239 HEPVAEGRLVRLLPE 253


>gi|239993372|ref|ZP_04713896.1| putative transcriptional regulator, LysR family protein
           [Alteromonas macleodii ATCC 27126]
          Length = 294

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 18/275 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V  SGS + AA +LH++ S+IS+Q+  LE ++G+ LF R+ R L+LTE G   +
Sbjct: 9   LQVFVAVTDSGSMSVAARELHMTVSAISQQLRKLEHDIGLSLFNRNTRSLSLTEAGRIYY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++    E  Q +++     P+GK+ I      G  LL   LK+    +P I I L 
Sbjct: 69  ETSKQMLQTAELAQQKIESLQDDPTGKINIIAPEGFGGGLLSEPLKKLCEEFPKITISLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQE- 185
           + ++  DI    AD  +    P+  ++     L T   +   +A H L N  E L+  E 
Sbjct: 129 VTDEPKDIIASSADLVLCF-APVSDTNFSSLVLATWKRILCVSADHPLAN--ETLTSPEA 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGIAL 243
           L+ H  I    +    M+  +         GE  +    + VNS  ++++      G A+
Sbjct: 186 LNAHTYIAHRHIEEYVMKHESE--------GEYELDTQRIDVNSMQTLIKLTQDSVGYAV 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           LP+  V+    +  + ++  D   P +TVY   P+
Sbjct: 238 LPEPEVRHLLKSGEMKQLFTDWELPDYTVYAVTPK 272


>gi|229589524|ref|YP_002871643.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361390|emb|CAY48265.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 320

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 137/303 (45%), Gaps = 30/303 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   AR  SFT AA +L+L+QS++SRQ+  LE ++   LFYR A+GL+LT  G +  
Sbjct: 18  LQTFEAAARHLSFTQAAHELNLTQSAVSRQVKRLEEDLARPLFYRLAQGLSLTPAGVRYF 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +  +L+    EL+        +L +A+T  +    L G L +F   +PD+ I+++
Sbjct: 78  RTIQRLLRELDRESAELRRRGA--DRQLTLASTPTISSIWLAGLLPDFQREHPDLDIRIL 135

Query: 128 -------LDNKDIDISMDYADCAIRLRKPIQSSSLI-QRKLVTIHMHAYAAPH------Y 173
                  LD  + D+ + Y    +     ++ S +    +++T+    Y   H      +
Sbjct: 136 CSDNPSRLDVSEYDLGLFYHLDELPAPHGLELSPVFDSEQVITVCSPGYIERHGPIRDAH 195

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
                  L I E   H+ +T+ D          W A +      PR   L+ NSY  +MQ
Sbjct: 196 HLLHAHTLLIVEDHYHDWLTWTD----------WFADIGADYYTPR-HALRTNSYQLLMQ 244

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+G G+AL    +++   D+  L   +   +     ++F  P        +++FR ++
Sbjct: 245 SAVMGHGVALGWKSLLESDLDSGRLQMALPHTMHSRGRLHFMQPHHRNPPLAVRSFRQWL 304

Query: 291 FLK 293
             +
Sbjct: 305 LAQ 307


>gi|153830536|ref|ZP_01983203.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148873995|gb|EDL72130.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 268

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 123/262 (46%), Gaps = 19/262 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G  
Sbjct: 5   NDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGEI 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ ++
Sbjct: 65  FLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  D+  +  D AIR  +P  S+ +      +      A+P YL      L   +
Sbjct: 125 LDLSDRLTDMYANPVDIAIRYGQPADSNLVAMLLCDSNERVLCASPEYLAAHPPILHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + F  ++   + +  W+ + +   GE     +Q N   +    + +  V G GI
Sbjct: 185 LQHHNCLCF--MLADTLHN-KWILSRN---GETHSVVVQGNPACNDGEVVHRLAVKGKGI 238

Query: 242 ALLPDYIVKDNPNLVRIMEDVI 263
           A         N +L+ I +D+I
Sbjct: 239 A---------NKSLMDISQDII 251


>gi|160900007|ref|YP_001565589.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365591|gb|ABX37204.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 285

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 133/298 (44%), Gaps = 20/298 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR+F   AR  + T AA++L ++Q+++S+ I  LE  +G  LF R  RGL LT
Sbjct: 1   MQLPLNALRMFDAAARHLNLTRAADELCVTQAAVSQHIRNLEERLGKPLFRRLPRGLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L    +E + ++E +  ++ E   +P   L +          L   L +F   +P
Sbjct: 61  DEGHALWPAVAESFARIEHSLQQVAEP--RPREVLTVGVVGTFAIGWLIPRLGQFQQQHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L+  N  +D++ +  D A+R        +  +  L+   +     P   +  R+P
Sbjct: 119 YIDLRLLTHNNRVDLAGEGLDAAVRFGDGAWQGTRAE-LLLRAPLTPMCTPALAQRLRQP 177

Query: 181 --LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             L+ Q L +           +  E  +W AT+D+    P       +S L++ +    G
Sbjct: 178 ADLAGQTLLRSY---------RLQEWESWFATLDQ--SAPLARGAMFDSSLTLAEAAAQG 226

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +G+ALLP  + +       LVR  E  +  +   +  +  +   +  LK FR ++  +
Sbjct: 227 AGVALLPARMFQHLLQQGRLVRPFEQEVD-TGAYWLTHLRSRAPSAALKTFRQWLLAQ 283


>gi|317054166|ref|YP_004118191.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952161|gb|ADU71635.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 300

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 124/265 (46%), Gaps = 20/265 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F      GSF  AAE+LH++ S++S+ ++ LET +G +L  R  R L LT+ G+  ++  
Sbjct: 12  FVASIECGSFAAAAERLHITGSAVSKSVTRLETRLGSRLLERTTRSLKLTDAGNAYYQTC 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L   +  L      PSGKLR+A     G+  +   L  F   +P++++ L   +
Sbjct: 72  IRILEELAEAEAVLAAQRSIPSGKLRLAVPNTYGRLAVMPLLMPFCQQHPELELSLRFSD 131

Query: 131 KDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  +  D A+R+   P  S+SL  R++    M   AAP YL     P  I +L +H
Sbjct: 132 RMVDLFDEGIDVAVRIGDTPNISASLGCRQMGRECMVFCAAPDYLARAGRPHHISDLLQH 191

Query: 190 NLITF----GDLIPKCMED----FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             I +    G   P  ++       W +   R         + +    + +Q    G GI
Sbjct: 192 PAILYERVDGSTKPWLLQTEDGHLQWRSVPHR---------MALGDVDAQVQAVCAGLGI 242

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPS 266
           A +P +++++   L R   +++ PS
Sbjct: 243 AQMPSWLIRE--PLARGELEILLPS 265


>gi|229069933|ref|ZP_04203212.1| Transcriptional regulator, LysR [Bacillus cereus F65185]
 gi|228713179|gb|EEL65075.1| Transcriptional regulator, LysR [Bacillus cereus F65185]
          Length = 300

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 146/314 (46%), Gaps = 41/314 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPTAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLRNELDIGITFL-PVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    + FN+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTV--------YFC-----YP 274
           +Q    G GI +LP    D++   N   ++I     TP+  +        Y C     + 
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIYRKDKYMCAATREFI 288

Query: 275 EALKNTGKLKAFRN 288
           E LK+T  +++F+N
Sbjct: 289 EQLKST--VRSFQN 300


>gi|226953644|ref|ZP_03824108.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|226835618|gb|EEH68001.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
          Length = 311

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 12/276 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D    FY+V + G F+ A+E  H+S+S +SR+I  LE +  + L  R  R   +TE G 
Sbjct: 5   FDDFHYFYLVVKHGGFSAASEAEHISKSKLSRRIIELENKFNVSLIQRTTRHFKVTELGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +V  ++E  +  L +   +P G ++I+    +    ++  L EFL  YP ++I
Sbjct: 65  EFYEECCKVIAQVECAENVLLKQKSEPQGLVKISCPPLMMHFQIRKLLNEFLKAYPKVEI 124

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L ++ +D+  D  D AIR   +P + SSLI R ++       AAP  L+  +     
Sbjct: 125 ALELTSRRVDLMHDDIDIAIRTSFEPNEDSSLIVRDVIQTEHCLVAAPELLQG-QHIHHY 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            EL  +  +  G  I K    + W L  V  D+ +  P    ++ N    +      G G
Sbjct: 184 SELSHYPSVALG--IQK--NQYFWHLCHVKDDKSVDVPYTPRVRSNDLAGVYYAVSDGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           IA LP   V+   +   L+ I+ +  +   TV   Y
Sbjct: 240 IADLPYLTVQADIEKGKLIHILPEWKSNRGTVQLVY 275


>gi|149377828|ref|ZP_01895559.1| putative transcriptional regulator [Marinobacter algicola DG893]
 gi|149357886|gb|EDM46377.1| putative transcriptional regulator [Marinobacter algicola DG893]
          Length = 315

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 140/309 (45%), Gaps = 32/309 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VAR  SF+ AAE+L +SQS++S QI  LET +G KLF+R  R L LT++G +  
Sbjct: 9   LPVFEAVARLNSFSLAAEELAVSQSAVSHQIKQLETYLGEKLFWRSGRTLALTDEGRQYL 68

Query: 68  RVTSEVYHKLETTQIEL---QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   ++E    +L   +ES      +LR++         L   L +    YP + +
Sbjct: 69  DGVGSALLQIERVSEQLLGHEES------RLRLSVFSSFAVRWLVPRLPDLQREYPQLDL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR------ 178
            L + +++  +S   ADC I + KP  S++     L T  +    +  Y +  R      
Sbjct: 123 SLEMSSENPVLSDRVADCFITI-KP-SSAAFSYELLYTERLFPVCSQDYWQRIRRELGRD 180

Query: 179 -------EP-LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPI-GEPRISCLQVNSY 228
                  EP LS +E+ +  L++   +  K   D+  W   VD+ I G  RI     +  
Sbjct: 181 SEVEGRDEPELSSEEVSRFPLLSTHSIFDKAAGDWEAWYRAVDQKIPGTARIQ--HFSHM 238

Query: 229 LSIMQYCVLGSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           L  ++      GIAL  DY++   +D+ + VR+    +      YF +  + +    L+ 
Sbjct: 239 LLALEAARFHQGIALTNDYMLSTRQDSGDFVRLPCHSVMTGDKFYFAWKTSRRRERGLQV 298

Query: 286 FRNFIFLKA 294
            R ++  +A
Sbjct: 299 LRRWLVDEA 307


>gi|120556099|ref|YP_960450.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8]
 gi|120325948|gb|ABM20263.1| transcriptional regulator, LysR family [Marinobacter aquaeolei VT8]
          Length = 279

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 130/265 (49%), Gaps = 22/265 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  ++   +A +GS + AA  L ++ +++ R++  +E  +G+ LF R  +G   +  G 
Sbjct: 12  WNDFKIVMAIANAGSLSGAARSLGVNHATVFRRLGDIERRLGVALFERSRKGYKPSLAGE 71

Query: 65  KLH---RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +L    R+  E  H  E    ++    ++PSG++ + TT  L   LL    KEF   YPD
Sbjct: 72  ELANTARIMDEAAHSAER---KVAGRDLRPSGEIWVTTTDSLLMGLLAPLFKEFRNRYPD 128

Query: 122 IQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I + + + N+ ++++   AD  IR + +P +  +LI R+L T+    +   H      + 
Sbjct: 129 IVLDVAVANEMLNLTRREADVGIRPVNRPPE--NLIGRRLATVGQAIFG--HRNLGLDKG 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCL-QVNSYLSIMQYCVL 237
            SI  L +   I  G   P+  +     W+A  +        +C+ +V++ + ++     
Sbjct: 185 QSIDFLSQQPWIGAG---PRLQDSVLEQWMAQKNLA-----DACVFRVDTLVGLLSAVNE 236

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDV 262
           G G+A LP Y+ +  P++V++ + +
Sbjct: 237 GLGLAALPCYLAETCPDIVQLSDPI 261


>gi|330821734|ref|YP_004350596.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373729|gb|AEA65084.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 293

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 12/240 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   +R  SFT AA++L+++Q+++S+Q+  LE  +G+ LF R  RGL +T++G  
Sbjct: 8   NALRAFESSSRHLSFTRAAQELNVTQAAVSQQVRALEERLGVSLFKRLPRGLAVTDEGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+ + ++E+   + +         +    T  +G   L   L+ F  L+P ++++
Sbjct: 68  LRPVLSDAFDRIESVLRQFEGGHFHEVLTVGAVGTFAVG--WLMPRLRSFHALHPFVELR 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N  +D++ +  DCAIR        +  Q KL    +    AP   +  R P  +  
Sbjct: 126 LMTNNNLVDLAAEGLDCAIRFGDGNWPGTRAQ-KLFDAPLSLLCAPDIAQRLRVPADL-- 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + +  L ++     +  +  NW A         R +    +S   +++    G+G+AL P
Sbjct: 183 VGETLLRSY-----RADDWMNWFAKAGLAPMPARGAVF--DSSRLMVEAATQGAGVALAP 235


>gi|330818321|ref|YP_004362026.1| Transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327370714|gb|AEA62070.1| Transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 304

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 119/263 (45%), Gaps = 14/263 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F  V  +  FT AA+ L LS   +SR ++ LE  +G++LF+R  R ++LTE   +
Sbjct: 5   DSLRIFCSVVEARGFTRAADMLGLSTPVVSRAVASLEKRLGVRLFHRTTRQISLTEAAEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   L+  +      + +PSG LR+ +      + L   +  +   YP + I 
Sbjct: 65  FYEGCVRVIADLDALEEGASTQAREPSGVLRVISHATATTHRLLPLIASYKRKYPKVSID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  + L   + S +++ R +  I     ++P YL     P    +
Sbjct: 125 VTLAERPVDLVAEGYDIGLLLPFMLTSDTVVTRLMEMIPFELVSSPEYLARAGTPTHPSQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241
           +  H ++ F   I K    F     VD   GE    P    ++ N+    +   + G G+
Sbjct: 185 IADHMVVAFSTSIRKPEMRFR----VD---GEALTVPFRYEIESNNAPFNLGLVLKGFGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMED 261
            +LP  +V+   ++  LV ++ D
Sbjct: 238 GMLPTSVVEEYLESGQLVSVLPD 260


>gi|295699490|ref|YP_003607383.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438703|gb|ADG17872.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 304

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 128/289 (44%), Gaps = 8/289 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + ++L +F  V  +GS + AA +L L+++ +S  +  LE EVG  L  R  R L +TE
Sbjct: 6   NVNLNRLAIFVAVIDAGSLSAAATRLGLAKTMVSTHMQRLEAEVGASLLVRTTRRLGVTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  + ++    E     L   +    G LR++   D G  ++   L E    +  
Sbjct: 66  AGRTFYEASVKILRAAEDALNALGGETSPVRGTLRVSAPNDYGTLVVTPALVELRRAHAQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+  ++ +D+  D  D AIRL + +  S+    KL +      A+P +L+    P 
Sbjct: 126 LDVELLSSDRYVDLIADGIDVAIRLGR-LADSNYRAVKLGSFVKWLVASPEFLRTWGVPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  EL+         L      D   L  VD      R  S L+VN+  +     + G G
Sbjct: 185 TPAELETLPYCALSVLPHPLTLD---LRHVDGKAASVRCESALRVNTANACRAATLAGGG 241

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I LL D+ + D+     L+R++ +  T   ++   +P       K++A 
Sbjct: 242 IGLLTDFSIADDVAAGRLIRLLPEWATAPASIQAVFPPTSHPPAKVRAL 290


>gi|221229305|gb|ACM10024.1| AmpR [Stenotrophomonas maltophilia]
          Length = 288

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 2/141 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT AA +L +SQ+++S QI GLE  +GI+LF+R  RG+ LT++G+ 
Sbjct: 9   NALRAFEAAARHQNFTRAALELCVSQAALSHQIRGLEDRLGIRLFHRLPRGVALTDEGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+ V +E + ++  +         +    L +A T   G   L   L  F   +PDI+++
Sbjct: 69  LYPVLNESFERISASIARYTGGPAREVLTLTVAGTFASG--WLLPRLAAFEAAHPDIELR 126

Query: 126 LILDNKDIDISMDYADCAIRL 146
           L   N  ID++ +  D AIR 
Sbjct: 127 LQTHNNRIDLAGEGLDLAIRF 147


>gi|221201038|ref|ZP_03574078.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206510|ref|ZP_03579523.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221173819|gb|EEE06253.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221178888|gb|EEE11295.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 327

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 129/287 (44%), Gaps = 12/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE  +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEHQSFRRAAHHLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTEAGVRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  + +++ +P G LR+  +  L    L   L  F   YP++++Q+ 
Sbjct: 67  DGCRALLEEFDHLEASVAQATHEPGGTLRVVASGLLSPGALTPLLGRFRHRYPELRVQMT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  I        + +LI + L      A A+P YL+   EP + ++L
Sbjct: 127 IAEAPLDVLDAGYDVGIVTGDRFDGNPALIAQALAPNPFVACASPAYLERHGEPRTPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H+ +    L P        L   D  +     R +C  VN    +    V GSGIA+L
Sbjct: 187 PRHDWVA---LAPHQHPGAWRLVGPDARVHTVTVRPAC-TVNQLALVHAAAVAGSGIAML 242

Query: 245 PDYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           P++ V    D+  LVR++    +  P   +   YP       + ++F
Sbjct: 243 PEHCVADAIDSGTLVRLLPGYRIDDPHTQLSLVYPNRQFVPARTRSF 289


>gi|190574822|ref|YP_001972667.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190012744|emb|CAQ46373.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 298

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 134/303 (44%), Gaps = 23/303 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  +F  V  +GS T AA++L LS++ +S  +  LE E+G+ L  R  R L LTE G +
Sbjct: 5   DRFDIFRAVVEAGSLTAAADRLGLSRAVVSFNLKRLEQELGVTLLLRSTRHLALTEAGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   +     +      +    +  G LR+ TT +  Q  L   L+ F   +P +Q+ 
Sbjct: 65  FLQHCVQALDAAQAAIDAARRDQHQLQGVLRLTTTPEYAQLRLIPALEAFRARHPALQLH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN------CRE 179
           L       D+  +  D AIRL + +  S L   +L    +   AAP  L          +
Sbjct: 125 LSTSPAPADLIPERFDLAIRLGR-LPDSGLHASELERHPLCPVAAPSLLARLPSADAADD 183

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           P+ +  L +       D +P    D +    AT       P  + ++V+   S+  + V 
Sbjct: 184 PVQLGTLPRLGYPRLAD-VPVVAPDGSDALFAT------NPGNAVVRVDGASSLRAFAVA 236

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+G+ +LP ++++D+     L  ++     P  +VY  YP + + + K++   +F+    
Sbjct: 237 GAGVTVLPRWLIEDDLAQDRLRPVLRQHRFPQQSVYAVYPHSTQPSPKVRQLIDFL---- 292

Query: 295 RDW 297
           R W
Sbjct: 293 RGW 295


>gi|154687956|ref|YP_001423117.1| YwbI [Bacillus amyloliquefaciens FZB42]
 gi|154353807|gb|ABS75886.1| YwbI [Bacillus amyloliquefaciens FZB42]
          Length = 302

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 120/266 (45%), Gaps = 21/266 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VAR  SFT A++ L++SQ +IS+ I  LETE+GIKLFYR+ R + LT+ G
Sbjct: 2   DIRHLTYFLEVARLKSFTKASQSLYVSQPTISKMIKNLETELGIKLFYRNGRQVELTDAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             ++    E+    +    EL +      G +RI     +G       L +F + YPD+ 
Sbjct: 62  QSMYVQAQEITKSFQNLTSELNDIMEVKKGHVRIGLPPMIGSGFFPRVLGDFRVTYPDVT 121

Query: 124 IQLILDNKDI------DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            QL+ D          D S+D     +   + I  +  I ++ + + +H     H L + 
Sbjct: 122 FQLVEDGSIKVQQGVEDGSLDIGVVVLPANEEIFHTFTIVKETLMLVVH---PSHRLADE 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQY 234
           +E  S+ EL +   I F        EDF   N + T     G       + + +  I + 
Sbjct: 179 KE-CSLHELKEEPFIFF-------REDFVLHNRIMTECVKAGFRPHVIYETSQWDFISEM 230

Query: 235 CVLGSGIALLPDYIVKD-NPNLVRIM 259
                GI LLP+ I +  +P+ VR +
Sbjct: 231 VSANLGIGLLPERICRGLDPDKVRTI 256


>gi|167621804|ref|YP_001676589.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351545|gb|ABZ74275.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 298

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 4/193 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + LR+F  VAR GSF+ A  +L + QS+ SR I+ LE  VG++L  R  R +TLT
Sbjct: 1   MSDQLESLRLFVRVARKGSFSAAGRELGVPQSTASRTIAELERRVGVQLLARTTRAVTLT 60

Query: 61  EQGSK-LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           + G+  L RV   +    E   +      ++  G LR+         ++  +L  F+  +
Sbjct: 61  DAGADYLARVEPLLAALEEADHVARGTGELR--GMLRVGVGTSFATRMVIPHLPAFMARH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L++++   D+  +  D A R      S++  +R L    M   A+P YL     
Sbjct: 119 PALHLDLLMEDARQDLITEGVDVAFRFGTLTDSTATARRILAWPRM-LVASPAYLARVGA 177

Query: 180 PLSIQELDKHNLI 192
           P+   +L +H LI
Sbjct: 178 PVIPADLPEHELI 190


>gi|254247455|ref|ZP_04940776.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124872231|gb|EAY63947.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 309

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 123/288 (42%), Gaps = 12/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT  G+ 
Sbjct: 5   DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTADGAL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +      +       G+L +     + + ++   L      +P +Q+ 
Sbjct: 65  LLERGRRLLAEADELDRLFRRRDRDVVGRLNVDVPSRIARRVVAPALPSLFRRHPKLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P     
Sbjct: 125 LGSTDRSIDLVQEGVDCAIRVGR-LTDSSLVVRPLGQFTLINCASPDYLRECGVPEHPDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGI 241
           L  H     G   P    +  W    D   G+     L     VN+  + +  C+ G G+
Sbjct: 184 L-AHGHWAIGYASPTTGRELGWEYCAD---GQRHTLTLPSRVIVNNAETYIAGCIAGMGL 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +P + V+    +  LV +M         V   YP     + +L AF
Sbjct: 240 IQIPRFDVEHLLASGALVDVMPGHRAEPMDVSAVYPHRRHRSRRLNAF 287


>gi|307727625|ref|YP_003910838.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588150|gb|ADN61547.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 309

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 122/281 (43%), Gaps = 10/281 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F + A  GS T AAE+L LS ++ SR +S LE  +G++L  R  R L LT+ G + HR  
Sbjct: 10  FVLTADLGSMTRAAERLGLSNAAASRMLSKLEDRLGVRLVERTTRRLWLTDAGREYHRRC 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S +  +         E S +P G LR+  ++      +   L  F    P++++ +   N
Sbjct: 70  SALIAEAADADAAAAELSTRPRGVLRVTCSVSFALLHIAPWLPRFRERNPELRVHIEAAN 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  +      D A+R R+    S ++ +KL        A+P Y+     P + + L  H+
Sbjct: 130 RYPNFIEAGIDVAVRTREYESDSGIMVQKLAQTRRVFAASPAYVARRGWPDTPEALASHD 189

Query: 191 LITFGDLI-PKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPDYI 248
           L+ +     P  +     L   D    E RI+   + N    I      G GI + P YI
Sbjct: 190 LLVYALATDPYVLH----LRKGDES-REVRIAPVFESNEGQVICAAARAGMGILIQPLYI 244

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           V+D+     LV ++ED   P   +   Y        K++ F
Sbjct: 245 VRDDIVAGRLVPLLEDWQLPPLIINLAYQSRRHQPAKIRVF 285


>gi|290473461|ref|YP_003466328.1| regulatory protein, LysR:LysR, substrate-binding [Xenorhabdus
           bovienii SS-2004]
 gi|289172761|emb|CBJ79532.1| Regulatory protein, LysR:LysR, substrate-binding [Xenorhabdus
           bovienii SS-2004]
          Length = 302

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 120/250 (48%), Gaps = 11/250 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  +  +GSFT  A+ L LS +++S+QI+ LE  +G+ LF R  R L +T +G  
Sbjct: 7   EDLSVFIRIIDTGSFTATAQALGLSPTTVSKQIARLEKNLGVVLFVRSTRSLRITPEGKA 66

Query: 66  L-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +V + +    E T+I  ++ S   +G +R+   + LG+  +   + EF   YP +  
Sbjct: 67  IAEKVRAALTLVEEATEIA-KDGSESLTGLIRLTAPVPLGRTYVAAAIAEFRKKYPSVGF 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +K +D+     D AIR+   +  S LI R+L        A+P YL+   E    +
Sbjct: 126 ILHLTDKIVDLYKVEMDLAIRVAN-LTDSGLIARRLTDNKRILVASPDYLRLHGELQHPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241
           EL  H+ + F        +   W +  DR  G   IS    L  N+   +  +C  G GI
Sbjct: 185 ELINHHCLLFS---ASGNKSTIW-SLHDRK-GTKAISLSSDLIANNGDVLRTWCTAGLGI 239

Query: 242 ALLPDYIVKD 251
           AL   + V D
Sbjct: 240 ALRETWDVVD 249


>gi|114769210|ref|ZP_01446836.1| putative transcriptional regulatory protein (LysR family) [alpha
           proteobacterium HTCC2255]
 gi|114550127|gb|EAU53008.1| putative transcriptional regulatory protein (LysR family) [alpha
           proteobacterium HTCC2255]
          Length = 306

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 12/246 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  +A + SF+  A+   +  SS+SR+I  LE  +G++LF R  R ++LT+ G    
Sbjct: 7   LRYFSKLAETLSFSETADYFRVPSSSVSRRIKDLEETLGVELFLRTTRSVSLTDLGI--- 63

Query: 68  RVTSEVYHKLETTQIE---LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +E+   L+T +I     +  SV PSG +RI       +  +   +     LYPD++ 
Sbjct: 64  LYLAEIKTALQTIEIADEMCKAQSVSPSGTVRITAMPGYAELYVLPAIDRMRALYPDLEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +++S + AD AIR    +    ++ R+L   +    AAP ++     P +  
Sbjct: 124 DLNVTDQMLNLSNNDADIAIRATSDL-PDQVVARQLNKHNFILVAAPDFINKNGSPQTSD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY-LSIMQYCVLGSGIAL 243
           +L+K  +  +    P+ +   NW A  ++   +  ++   V ++  S+++  V G GIAL
Sbjct: 183 DLNKFPVFMYR--TPRGV--LNWQAQKNQIWKDIELTPKYVTNHGPSLLESVVEGRGIAL 238

Query: 244 LPDYIV 249
           LP + V
Sbjct: 239 LPSWGV 244


>gi|28870256|ref|NP_792875.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853503|gb|AAO56570.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 307

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  ++SR+++ LE ++G++L +R  R ++LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAVSRRLAALENDLGVRLVHRTTRSVSLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E  +  L+  +   SG LR+      GQ ++   L E +L  P + I L 
Sbjct: 66  PHAKTMLQASEAARATLKADAGTASGILRVTAPSVFGQTVIMPLLPELMLENPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL     P  + +L 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLVRRGTPTVLDDLR 184

Query: 188 KHNLITF 194
            H  I  
Sbjct: 185 HHPCIAL 191


>gi|83943749|ref|ZP_00956207.1| hypothetical protein EE36_11064 [Sulfitobacter sp. EE-36]
 gi|83845429|gb|EAP83308.1| hypothetical protein EE36_11064 [Sulfitobacter sp. EE-36]
          Length = 301

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LR+F + A   + + A   L L+ +  S +++ LE E+G++L  R  R ++L+ +
Sbjct: 1   MDTDNLRLFVMAADRLNISAAGRNLGLAPAVASARLAKLEQELGVELLRRTTRKVSLSLE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS       E+  + E  +  L      P G +R A      Q  +   L +F   +PD+
Sbjct: 61  GSDFLPYAREILAQAEAAKAVLGSHETSPKGTIRFAAPSSFAQRHIMPLLPQFHAAFPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L +   D      D A+R   P+  SSL  RKL        A+P YL+    P S
Sbjct: 121 TLELRLSDARFDAIEGSFDLALRA-APLTDSSLKGRKLAGDTRVLCASPAYLEEHGVPQS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGI 241
             EL  H  + + DL P+   +         P+   ++ C   V+   +  +  + G+G+
Sbjct: 180 PAELRGHRFLAWIDLEPR---ELIAPEGETAPLDPAQMICRTIVDDGDAQREATLAGAGL 236

Query: 242 ALLPDYIVKD---NPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++   + V D   +  L+R++ E  +  S  ++  YP +   T K +   +F+ 
Sbjct: 237 SINSLWSVSDELRSGRLIRVLPEWKLNDSSVLWLMYPRSNVLTPKTRILIDFLI 290


>gi|298717169|ref|YP_003729811.1| HTH-type transcriptional activator AmpR [Pantoea vagans C9-1]
 gi|298361358|gb|ADI78139.1| HTH-type transcriptional activator ampR [Pantoea vagans C9-1]
          Length = 300

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 136/296 (45%), Gaps = 22/296 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W++L+   V+A   SF+ AAE L L +S++S  I GLE  +G++LF+R  R + +TE G 
Sbjct: 6   WNELQAVKVIAGQRSFSRAAEVLGLKRSTLSHMIKGLEATLGVQLFHRTTRSVAMTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    + +  +++    ++  S+ +P G LRI+ +      LL+  L  F+   P I+I
Sbjct: 66  MLIARLTPLLTEMDELLNDVTASAQQPYGTLRISASDAAISLLLETVLPAFIQQKPGIEI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+   + +DI     D  IRL + +    +       +     A+P YL    +    +
Sbjct: 126 DLVAQGQLVDIVAQGFDAGIRLIENVPKDMVAIPLSGPLRFVTVASPEYLSGRPKVCHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           ++ +H  +     +P   + ++W          +D P        L +++   +++  V 
Sbjct: 186 DMMQHACLR--QRLPGG-KRYHWEYKQHEQQFALDVP------GSLTLDNSALMVEAAVA 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+A +P+   +   D   LVR++ED    S  +   +P+   N     A R FI
Sbjct: 237 GLGVAYVPEPYARQGLDTKRLVRLLEDWTIASQGLALYFPQ---NRHMPVALRLFI 289


>gi|113969529|ref|YP_733322.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113884213|gb|ABI38265.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 313

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 133/290 (45%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGHL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++Q
Sbjct: 66  LYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMEKHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLVASPDYIAKHGEPSRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  L
Sbjct: 185 LVDHNCLVYQG---EWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVYL 241

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV ++ D  +T    +   YP       K+ AF  FI
Sbjct: 242 ASYLMEDEIAKGTLVPLLRDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFI 291


>gi|323492162|ref|ZP_08097320.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323313475|gb|EGA66581.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 304

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 145/296 (48%), Gaps = 22/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GSF+  A++L +S SS+SR I+ LE  +  KL  R  R + L+  G ++
Sbjct: 12  EMAIFVNVVETGSFSKTAKKLGVSPSSVSRSITRLENTLEEKLLERTTRQMRLSTTGQEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           + + S++ H  +      Q    + SG LR+A    L + +L   + +F+  +P + +QL
Sbjct: 72  YSLCSDMMHSAKLAVSAAQTDKSEVSGVLRVAAPKALSRQVLMPMILDFIQEFPKVSLQL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            + +  ID   D  D  I +  KP  +  LI R L    +   A+P YLK    P    +
Sbjct: 132 KVADHYIDPIGDEVDVIIHITDKP--NIGLIARTLSQCRLVLCASPDYLKQYGTPQHPDQ 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL----SIMQYCVL-GSG 240
           +  HN +  G+  P+   D  W  T D    E ++S     S+      I +  VL G G
Sbjct: 190 ITDHNCLCLGE-NPR---DRIWDFTQD----EQKLSINANGSFAVNHSEIRREAVLRGIG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDV-ITPSF--TVYFCYPEALKNTGKLKAFRNFI 290
           +++ P++ ++   D+  +V +++D  I  ++   V   Y ++    G++KAF +++
Sbjct: 242 LSVFPEFAIQEYLDSGQVVEVLQDWHIGGNYQGQVIAQYAQSKFIPGQIKAFVDYM 297


>gi|291543539|emb|CBL16648.1| Transcriptional regulator [Ruminococcus sp. 18P13]
          Length = 300

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 121/261 (46%), Gaps = 7/261 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D  RVFY VAR G+ + AA  L  +Q +++R I  LE E+G  LF R  +G+ LT
Sbjct: 1   MYISYDYYRVFYYVARYGNVSQAARLLLNNQPNLTRTIKKLEAELGCPLFSRSRKGMKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L          +   + E+ E     SG + IA +    + +L   LK++ LLYP
Sbjct: 61  PEGEHLFEHIRIAMEHISAGEAEITEQRSLQSGTVYIAASEVALRCMLLPVLKKYRLLYP 120

Query: 121 DIQIQLILDNKDIDISM---DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            I I++   +    IS      AD A+     +Q++SL +  +  I   A  +P++    
Sbjct: 121 GIHIRISNHSTPQAISALKEGTADIAVVTTPTVQAASLTETLVKPITEVAVCSPYFTALT 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
              +S+ +L    LI+ G    K    F+ L T      +P I     +  L ++Q  + 
Sbjct: 181 GRQVSLADLVHFPLISLGKDT-KSFAFFSGLFTEHGLPYQPDIEAFTADQILPMVQADL- 238

Query: 238 GSGIALLPDYIVKDNPNLVRI 258
             G+  +P+  ++D+  + +I
Sbjct: 239 --GVGFVPEEFLQDSSGVCKI 257


>gi|269140330|ref|YP_003297031.1| transcriptional regulator, LysR family [Edwardsiella tarda EIB202]
 gi|267985991|gb|ACY85820.1| transcriptional regulator, LysR family [Edwardsiella tarda EIB202]
 gi|304560154|gb|ADM42818.1| Transcriptional regulator [Edwardsiella tarda FL6-60]
          Length = 311

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 119/250 (47%), Gaps = 17/250 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++ F  VA+SGSFT A E+L  S+S+I + ++ LE+ +G++L  R  R + LT++G+ 
Sbjct: 8   NGIQAFIAVAQSGSFTLAGERLCRSRSAIGKAVAKLESRLGVRLLQRTTRRVALTDEGAA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             + +   ++ LE           +  G +R++  +  G+  +   ++  +  YP ++ +
Sbjct: 68  FLQHSLRAFNALEQAVDVAHAQRGEVQGTIRLSVPVAFGRCWILPVIQRLVQRYPALRPE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   N+ I +  +  D A+R+  P  + +LI R++   H    AAP  L  C + +   E
Sbjct: 128 VSFANQPIALDDERVDIAVRIGPPPNAPTLIARQIGVQHACLCAAPALLARCPD-IDAPE 186

Query: 186 LDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGS 239
              H           C+  + +      DR  GE R       + ++  +++    + G 
Sbjct: 187 ALAHT---------PCLVSQPYQRWPLRDR-DGETRHYAVRQAMVLDDVMALRDAALAGL 236

Query: 240 GIALLPDYIV 249
           G+A LPD++ 
Sbjct: 237 GVARLPDWLA 246


>gi|187922675|ref|YP_001894317.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713869|gb|ACD15093.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 309

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 111/241 (46%), Gaps = 17/241 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           LR F  VAR G  T AA +LH++ S++S+QI  LE  +G+ LF R ARGL LTE+G    
Sbjct: 10  LRCFEAVARLGGVTQAARELHVTHSAVSQQIKVLEDSMGVALFMREARGLRLTEEGRLYA 69

Query: 65  -KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     ++ H     Q    ES      +L I T     Q+ L   L  F   +P  +
Sbjct: 70  LDIRMALRDIAHATRRAQARPHES------ELVITTLPSFAQHWLVPRLGSFRDAHPYYR 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKNCREPLS 182
           I+L    +  D  +  +D  IR+ +     ++ Q+KL    M   AAPH+ L + R P +
Sbjct: 124 IRLQTSLQVEDFRLGASDIGIRMGQG-HWPNVAQQKLFDDEMVVVAAPHFALTHGRLPSN 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             E+    LI+  D       D+   A V  P  E  +  L  N    ++   +LG GIA
Sbjct: 183 AAEVLACPLISSPD---TPWHDWCQAAQVAEP-AEGAV-VLSANDSNIVIGAVLLGQGIA 237

Query: 243 L 243
           L
Sbjct: 238 L 238


>gi|91794044|ref|YP_563695.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91716046|gb|ABE55972.1| transcriptional regulator, LysR family [Shewanella denitrificans
           OS217]
          Length = 313

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 136/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G+ 
Sbjct: 6   EPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGNL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    E     +   +    G L++  +   G   +   L +F+  +PD+++Q
Sbjct: 66  LYVQGEELLRDAEQAVSSVHNLNDATRGVLKVGISQSFGTMHIIPALPDFMARHPDLELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+         ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLVASPSYIAQHGVVARPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    V G G+A L
Sbjct: 185 LVDHNCLVYQG---EWHEHSMWQFKRGEDYCEIGVSGNFRVDNAPALKSAAVSGLGVAYL 241

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      L+ ++ D  +T    +   YP       K+ AF +FI
Sbjct: 242 ASYLMEDEIEKGTLIPLLTDWQLTNHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|323496183|ref|ZP_08101241.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323318460|gb|EGA71413.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 293

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 134/292 (45%), Gaps = 17/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  SG F+ AAE L +  + +SR +S +E ++G+ +  R  R + LT++G +
Sbjct: 6   DDLEILLAVVDSGGFSAAAETLDIQVARVSRAVSKVEKQLGVSILNRTTRRIELTDEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +++  + E+     +P G+LR+        + L   + +F   YPDI+++
Sbjct: 66  FVEAIRVGLGQIQQAEEEIISRGERPQGRLRVDAASPFVFHQLVPLIGDFQKQYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ + +  S+L  R L    ++  AAP YL     P    +
Sbjct: 126 LSSNEGFVDLLEKKTDLAIRIGQ-LNDSTLHARPLGRSPLYFVAAPSYLAKRGLPQQTTD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ I F  + PK +  +     T  +P        L  ++  ++ Q  + G GIA L
Sbjct: 185 LTHHDTIGF--IGPKVLNQWPLKGFTHLQP-------SLTSSNGETVRQLALAGHGIACL 235

Query: 245 PDYIVKDNPNLVRIM----EDVITPSF--TVYFCYPEALKNTGKLKAFRNFI 290
             ++VK +    R+M     D +T S    V   Y ++     ++ AF +FI
Sbjct: 236 SGFMVKKDIEEGRLMSLLENDKLTHSGREQVNAVYYKSSNVARRISAFIDFI 287


>gi|311280764|ref|YP_003942995.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308749959|gb|ADO49711.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 296

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 32/302 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG---- 63
           + +F  V   GSFT AA+   +S + +++ I  +E  +G +L +R  R   LTE G    
Sbjct: 7   MEMFVRVVECGSFTAAADASDVSTTMVAKHIRTIEQRLGARLLHRTTRRQQLTEVGQLYY 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  RV +E +   E + +ELQ +   P G + +   +  G  +L   L  ++  YP++ 
Sbjct: 67  ERCRRVLAE-FSLAEHSAMELQST---PKGLVHMVAPVSFGSQVLVPELSAYMAQYPEVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L LDN+  D++    +  I + + ++  +++ R L +      AAP YL+    P   
Sbjct: 123 ITLTLDNRLPDLADGNVELGIHIGE-VRQPNVVARPLRSYRRILAAAPAYLRQHGSPEHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGE----PRISCLQVNSYLSIMQY 234
           +EL  H+          C+    W A  DR     P GE    P       N   ++   
Sbjct: 182 RELHDHS----------CLGIAYW-AHQDRWELMGPNGEMFKAPIGGRFMSNQGSALRMA 230

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G GI L P+ ++ D+     LVR++         ++  Y +  + + KL++  +F+ 
Sbjct: 231 ALHGCGIVLQPESVLMDDIAQGRLVRVLPAWSYKPTPMFLIYQQDSRPSAKLRSLIDFLM 290

Query: 292 LK 293
            +
Sbjct: 291 AR 292


>gi|326315161|ref|YP_004232833.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323371997|gb|ADX44266.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 298

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 23/305 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AA QL  + S +SR ++ LE ++   L  R  R + LT
Sbjct: 1   MKTTLEELQAFAAVVDGGSVTAAAAQLDQTASGVSRALARLEKKLDTTLLRRTTRRIELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   L+  +  +     +P+G+LR+        +++   +  F   YP
Sbjct: 61  EEGQAFLVRARAILAALDEAEEHMAARRRQPAGRLRVNAATPFMLHVVAPLVPAFRSAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D ++ID+     D AIR+   ++ S+L  R L +  +   A+P Y+     P
Sbjct: 121 QIALELDTDERNIDLLERRTDVAIRI-GALRDSTLHARPLGSSRLRVLASPAYVATHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLG 238
            S   L +H L+ F    P+ +     L  +  P G+  P    +  +S  ++ Q  + G
Sbjct: 180 KSAAALAQHTLLGFTQ--PEALN----LWPLRGPHGDAWPATPDIAASSGETLRQLALEG 233

Query: 239 SGIALLPDYIV---KDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI- 290
           +GI  L D++    ++  +LV+++     DV  P   VY+      +NT        F+ 
Sbjct: 234 AGIVCLSDFMTARDRERGDLVQLLARDTADVRQPISAVYY------RNTQLASRIACFLD 287

Query: 291 FLKAR 295
           FL AR
Sbjct: 288 FLAAR 292


>gi|238796451|ref|ZP_04639959.1| Transcriptional regulator [Yersinia mollaretii ATCC 43969]
 gi|238719656|gb|EEQ11464.1| Transcriptional regulator [Yersinia mollaretii ATCC 43969]
          Length = 320

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 139/315 (44%), Gaps = 29/315 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  V    SFT  A+ L+L +S+++  I  LE  + ++L  R  R ++ T  G  
Sbjct: 5   DAMRVFIRVVEQRSFTQTAQDLNLPRSTVTDAIKQLEKRLNVRLLQRTTRHVSPTLDGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   +E    E+  +  KP G LRI     L ++ +   L +F+  YPDI++ 
Sbjct: 65  YYQRCLRIIADIEDA--EMAFAHAKPRGLLRIDVQGTLARHFVLPQLPDFIAQYPDIELF 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D  +R+   +Q S ++ R++  +     AAP YL+    P    +
Sbjct: 123 ISEGDRLVDLIREGIDGVLRVGN-LQDSDMVARRVALLPQVTCAAPQYLEQHGTPELPTQ 181

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVD-----RPIGEPRIS----------CLQV 225
           L  H ++ F     G L+P      + L           +  P +S           L V
Sbjct: 182 LSGHQMVGFRSSATGGLLPLEFSSHSSLGAYPTVRSAHSLSAPHLSSETLQVKLPAVLSV 241

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
               S +    LG G+  +P Y +  +     L+ I+ +   P   V F YP + + + +
Sbjct: 242 TGAESFVAAARLGLGMIQVPRYHIAPDLAAGTLIEILPEFPPPPMPVSFLYPHSRQLSPR 301

Query: 283 LKAFRNF---IFLKA 294
           ++ F ++   +FL A
Sbjct: 302 VRIFSDWLSQLFLTA 316


>gi|126739578|ref|ZP_01755270.1| regulatory protein, LysR:LysR, substrate-binding [Roseobacter sp.
           SK209-2-6]
 gi|126719224|gb|EBA15934.1| regulatory protein, LysR:LysR, substrate-binding [Roseobacter sp.
           SK209-2-6]
          Length = 300

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 134/283 (47%), Gaps = 10/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSF   A ++ LS  S +R I+ LE  +G +L  R  R + LT+ G    
Sbjct: 7   LEVFIAVAEAGSFVAGARKVGLSAPSATRGINALEARLGARLLSRTTRRVRLTDVGKAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++        +++KPSG+LRI    + G+  +   L +FL L+  +   ++
Sbjct: 67  EDARHILAQMQAADDAATGAAIKPSGQLRITCPTEFGRIYVAPILTDFLDLHHSVTADVL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  +  D A+R+ + + SS L   ++  +       P Y +    P +  +L 
Sbjct: 127 MVDRIVNMVEEGFDLAVRIGE-LPSSGLTAVRVGQVRRLICGTPEYFEKNGRPETPADLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H +I+   + P  + ++ + + +  P+  EPR+    V + +S+ +    G G+  +  
Sbjct: 186 QHQMISASPVSP--VTEWRFGSELQTPVRIEPRLIVSSVATAISVARR---GWGLCRVLS 240

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           Y V     +  L  ++ED       ++  + E  +   K++AF
Sbjct: 241 YQVGPDLQSGKLQTVLEDFEPTPLPIHLVHVEGRRAPAKVRAF 283


>gi|170736360|ref|YP_001777620.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818548|gb|ACA93130.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 309

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 94/184 (51%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  SGSF  AA +L +++S++++ ++ LE  +G +L  R  R L LT++G   +   
Sbjct: 11  FVDVVESGSFAAAALRLGMTRSAVAKIVARLELRLGARLLQRTTRQLGLTDEGLVYYEQC 70

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L   +  L     +P+G++R++  +  G+  +   ++  +  +P ++I +   +
Sbjct: 71  RRLLAELGEAEAALDAGRREPAGRVRVSVPVLFGRQCVAPVVRRLVERHPRLEIDMSFSD 130

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D+  D  D A+R+ +   +++L+ RKL    M   A+P YL     P  + EL  H 
Sbjct: 131 RVADLVNDGFDLAVRIGELADTNALVGRKLGVQRMGICASPAYLARHGRPSGLDELASHV 190

Query: 191 LITF 194
            I +
Sbjct: 191 GIAY 194


>gi|120612005|ref|YP_971683.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120590469|gb|ABM33909.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 303

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 90/191 (47%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L+ F  V    SF  AAE L LS S++S+ I  LE  +G +L  R  R +  +  G
Sbjct: 5   DYAELKAFVAVVERQSFARAAEHLGLSPSALSQTIRQLEGRIGARLLNRTTRSVAPSTSG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+R  + +  ++     E +E++ K  G LRI T     + ++   L  F   +PD  
Sbjct: 65  EQLYRRIAPLLREMAAAVAETREATGKVGGTLRINTLGIAARTVIAPRLARFHQAHPDAI 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +++D+   DI     D  +R+   ++   +  R    + M A A+P Y+     P S 
Sbjct: 125 LDIVVDDALADIVAGRFDAGVRVGGQLEKDMVAVRLTPDMPMVAVASPDYIARRGTPKSP 184

Query: 184 QELDKHNLITF 194
            +L  H  I +
Sbjct: 185 ADLHGHACINW 195


>gi|319761002|ref|YP_004124939.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|317115563|gb|ADU98051.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
          Length = 292

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 22/297 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF VVAR+G+ T AA +L++SQS++SRQ++ LE  +G++LF R   G+ LTE G  
Sbjct: 7   NPLKVFEVVARTGNLTLAASELNVSQSAVSRQVAVLEEYLGVQLFTRERVGVRLTEVGEG 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R     + ++      +         +LR  TT  L    L   L  F   +P++++ 
Sbjct: 67  YARRIGPAFGEIAAATEAITRKYSNNVIRLRTYTT--LTARWLIPRLPHFKARHPEVEVS 124

Query: 126 LILDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     +D   +  D AI L     P   ++L+   +V        AP ++     P  
Sbjct: 125 ILNSTAPLDFGAEQCDLAIVLGDGHWPGAEATLLLEDIV----EPVCAPGFIAEGAPP-- 178

Query: 183 IQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + L    L     L+ K  +D    WLA    P        +  +S +   Q  V G G
Sbjct: 179 -EALRGKRL-----LVSKYRKDDWPRWLAHAGLPELFETAETMVFSSSILTWQAAVDGLG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV---YFCYPEALKNTGKLKAFRNFIFLKA 294
           IA+   ++++ +    R++  +  P  T    Y   P   + +GK+ AF++++ ++A
Sbjct: 233 IAIGQQHMLEADFQAGRLVRPLARPLRTGKGHYLVTPALQRYSGKIAAFKDWLMVEA 289


>gi|296156830|ref|ZP_06839667.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295892716|gb|EFG72497.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 296

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 13/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  F  VA  G F  A+  L   ++++SR+++ LE  +G++L  R +R L LTE+
Sbjct: 1   MDLTSLADFNAVALHGGFGPASRALDRPKATLSRRVAELEEALGVRLIERGSRRLRLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  LH  T  +  +++     +   +  P G+LRI+  +     +L      F L YP +
Sbjct: 61  GLVLHERTRGLMAEIQEAGEVVASRAPVPRGRLRISAPVVFAHVVLGRIAARFALAYPQV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++I +++ +D   D  D  IR+  P +   L+ R++        AAP           
Sbjct: 121 ELEVIAEDRVVDPVEDGYDLVIRI-NPSRDEQLVGRRIFGDERLVVAAPAMSMPSSFAGG 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239
              L    ++   +L  +      W  TV  P G   ++    L+ +S L +    V G 
Sbjct: 180 AAALPVPAIVRASELPGEI-----W--TVHTPGGLQSLAPQPVLRFSSLLMVRDAVVDGV 232

Query: 240 GIALLPDYIVKDNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFI 290
           G ALLP  +V+ + +  R++   +   P   ++  Y      + K++AF N +
Sbjct: 233 GAALLPRLLVEQDVSAGRLVCWGVADGPPVEIWALYNSRRLLSAKVRAFMNLL 285


>gi|254499077|ref|ZP_05111769.1| LysR family transcriptional regulator [Legionella drancourtii
           LLAP12]
 gi|254351704|gb|EET10547.1| LysR family transcriptional regulator [Legionella drancourtii
           LLAP12]
          Length = 312

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   GSFT A+ +L +++S +SR+I+ LE  +G++L  R  R L+LT+ G
Sbjct: 9   DLNDLYFFCRVVDEGSFTQASLKLEMTKSKLSRRIAELENHLGVRLLNRSTRKLSLTDVG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             ++  +  + ++    Q    ++  KP G++ +       Q+     + +F+  YPD++
Sbjct: 69  HLVYEYSKTMVNQAIFAQEVAIQAQSKPKGRIYVTCPTLFAQSDFNHIIIDFMRQYPDVR 128

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   ++ +D+  +  D A+R +   +  S+L+ RKL          P YL+      S
Sbjct: 129 INLYASDRKVDLIEEGFDLALRFQTNELDDSTLVVRKLGESAHCLVGTPSYLQGHFPLKS 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL   + +  G                 + I  P    L+   +  + Q  +   GI 
Sbjct: 189 PTELTGFSWL--GKTRSDGTNQLQLSNANGQKITIPLAPRLESTEWTILKQAALADLGIT 246

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP    +   N   LVRI+ +    + ++Y  YP     T  ++ F +F+
Sbjct: 247 LLPIEYCQQEINAGTLVRILPEWSLSTASLYLIYPSRRGLTPAVRHFIDFV 297


>gi|238028641|ref|YP_002912872.1| transcriptional regulator [Burkholderia glumae BGR1]
 gi|237877835|gb|ACR30168.1| Transcriptional regulator [Burkholderia glumae BGR1]
          Length = 304

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 91/195 (46%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+F  V  +  FT AA+ L LS   +SR I+ LE  +G++LF+R  R ++LTE   +
Sbjct: 5   DSLRIFCSVVEARGFTRAADMLGLSTPVVSRAIASLEKRLGVRLFHRTTRQISLTEAAEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   L+  +      + +P+G LR+ +      + L   +  +   YP + I 
Sbjct: 65  FYEGCVRVIADLDALEAGASTQAREPTGVLRVISHATATMHRLMALIASYKEKYPKVNID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  + L   + S +++ R +  I     A+P YL     P    +
Sbjct: 125 VTLAERPVDLVAEGYDVGLLLPFMLTSDTVVTRLVELIPFELAASPDYLARHPAPTHPAQ 184

Query: 186 LDKHNLITFGDLIPK 200
           L  H ++ F   I K
Sbjct: 185 LADHLVVAFSTSIRK 199


>gi|153825432|ref|ZP_01978099.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|149740978|gb|EDM55055.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
          Length = 312

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +PSG L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPSGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P+   +
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPVHPTD 189

Query: 186 LDKHNLITFGD 196
           L +H+ +   +
Sbjct: 190 LAEHDCLYLAE 200


>gi|332992858|gb|AEF02913.1| LysR family transcriptional regulator [Alteromonas sp. SN2]
          Length = 321

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 118/251 (47%), Gaps = 24/251 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+V   VA   S T AA QL +S S+ S  +  LE +VG +LF R  R + L+ +G +
Sbjct: 4   EDLQVLLKVAELHSITAAANQLDISSSAASVALKRLEQDVGTQLFVRTTRKIRLSPEGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              +  +    L+   + + E     +G++++A + ++G+NL++  L + +  + D+ ++
Sbjct: 64  FLPLCQQALDLLQQGVMRISEEQQDINGEVKMAMSSEMGRNLMRVLLNDIMAEHEDVSVR 123

Query: 126 LILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L + +  +D   D  D A+R   +  +Q  ++   K+  I     A+P Y++   EP S 
Sbjct: 124 LQVSDSRVDFYRDGVDVALRAMTKSAVQELNMYGFKICNIPHFICASPRYIEKYGEPTSP 183

Query: 184 QELDKHNLITFG---------DLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           +EL  HN + +          DL     K  E F      +R + +  I          +
Sbjct: 184 EELANHNALLYKLYELTHDGWDLYKGGEKGKEKFKVKVKSNRAVNDGDI----------V 233

Query: 232 MQYCVLGSGIA 242
            ++CV G GIA
Sbjct: 234 RRWCVDGVGIA 244


>gi|330941250|gb|EGH44114.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 314

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 127/272 (46%), Gaps = 11/272 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLGVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHVRMGCTEGFGSFFITPQLSHFLDSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N   P+
Sbjct: 131 ISLDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLGLYATQAYLDN-HSPI 188

Query: 182 SIQ-ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L +H  I++ D +    E       +     + R + + +  Y + +Q    G  
Sbjct: 189 EHKVDLSEHVFISYVDDLAFSSELLYMSNLLPNAQAQLRSTSV-IPQYTAALQ----GRA 243

Query: 241 IALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
           +A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 244 LAILPCFLAAQDPRLLPVLREEVNITRQFWMY 275


>gi|167589619|ref|ZP_02382007.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 313

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 124/287 (43%), Gaps = 11/287 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A  GS   AA    +S  + S  +  LE E+G++LF+R  R L+LTE+G +L   
Sbjct: 9   TFVRAATLGSLRSAAVDQGISPQAASHAVMQLEKELGVRLFHRTTRKLSLTEEGQRLLDS 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  L +   E + +     G LR++    LG  +L    +EF   Y ++Q+++  D
Sbjct: 69  VKPALAILSSALDEARRAKEDVGGILRVSAPRALGLPVLWPYFEEFQKRYQNVQLEVQFD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+  D +D   R   P    S I R+LV I +   A+P Y++    P +I+EL +H
Sbjct: 129 DQFTDLVADRSDVGFRGGPPPSGGS-IARRLVPIQLIVCASPEYIERNGAPRTIEELARH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               +       +    W   +D  I     P   C  VN      Q  + G GI  L  
Sbjct: 188 RCTGYRRANTGKLA--QWQFRIDDEIVYRDVPAAIC--VNDTELETQAVLSGLGIGQLGS 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +       +  LV ++   +T    +Y  Y    + + ++K F +F+
Sbjct: 244 FNAATHIRSGRLVPLLTRHVTEYGMIYIYYKHRTEQSLRVKTFIDFM 290


>gi|13475773|ref|NP_107340.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14026529|dbj|BAB53126.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 302

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 129/288 (44%), Gaps = 13/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  VAR  +F  AA  L ++ S++S+ +  LE  +G  LF R  R + LTE G +
Sbjct: 13  EGVEVFLAVARHRNFRRAAADLGVTPSAVSQAVRALEARIGAALFVRTTRSVGLTEAGQR 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + ++       ++   +P+G LR++    +   +L+  +  F   YP+++++
Sbjct: 73  FLDRAGPGFEEIVAAGEAARDIGQRPTGLLRLSVPRAVVPLILEPVIASFCQAYPEVELE 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D++    D  IRL + I +  +  R   +       +P YL     P  I +
Sbjct: 133 IAASDEMVDLATGGFDAGIRLGQFIATDMVAVRLTPSFRFVVVGSPDYLDRHGRPERIDD 192

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H  +      G + P    D N    ++  +  P I+    + Y +++   + G G+
Sbjct: 193 LRNHACLRLRRSNGAIAPWTFVDGNE--AIEAMVSGPLIA----HDYPTLLGAAMRGIGL 246

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A +P  + +   +   L  +++ +   +  V+  +P   +   KL+AF
Sbjct: 247 AQIPRPVAEGPIEQGKLEPVLDTIAATTPGVFLYHPGKRQILPKLRAF 294


>gi|238894775|ref|YP_002919509.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547091|dbj|BAH63442.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 301

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 1/192 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ L++F  V    SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+ 
Sbjct: 6   LDFNALKIFIAVVERDSFVGASKALEMPTSNVSRCISQLEDKLNLQLIERSTRHMKLTQA 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   +PD+
Sbjct: 66  GHLLYTRAKPLLEALEQTETELTLRQMQFKGPLRICIPNEIGPVLLGSVVADFACQHPDL 125

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I  + +    +   D  D A+ + R  +  S  I R LVTI     AAP  ++    P 
Sbjct: 126 EISCVTNLSGYESLRDDLDLAVIVSRGQMDDSDYIARHLVTIPCTIVAAPSVIQRYGTPS 185

Query: 182 SIQELDKHNLIT 193
            IQ+ ++   IT
Sbjct: 186 RIQQFEELPCIT 197


>gi|197295547|ref|YP_002154088.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195945026|emb|CAR57649.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 315

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 31/297 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++LR    V    SF  AAE+L L+ S++S  +  LE  VG++L  R  R ++ T  G +
Sbjct: 8   NELRALSAVVSHRSFRKAAEELELAASTLSHMMRDLEERVGVRLLNRTTRSVSPTPAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   L++   E+  +   PSG LR+  +  +   L+Q  + EFL  YP++++ 
Sbjct: 68  LVTKLHPILQDLDSALAEMDANRDHPSGTLRLTASETVSMLLVQKIIPEFLNRYPEMRVD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH------MHAYAAPHYLKNCRE 179
           L+ +   +DI  +  D   RL         + + +V +H      M   A+  YL   + 
Sbjct: 128 LVAEPAFVDIVAEGFDAGFRL------GEAVPQDMVAVHFGGPSRMIPVASKTYLAARKP 181

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIM 232
           P +  +L +H  I      P     + W         ++D P        L +N    ++
Sbjct: 182 PRTPVDLAEHQCIC--SRTPNG-RPYKWEFKRRGHAVSIDVP------GSLVLNRTELML 232

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  + G G+A +P+ + +   DN +L  ++ +       +Y  YP   +    L+AF
Sbjct: 233 EAALQGLGVAFVPEQMARPYLDNGSLSALLSEWCPTYPGLYLYYPGHRQVPVGLRAF 289


>gi|27367016|ref|NP_762543.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27358584|gb|AAO07533.1|AE016810_36 Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 295

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 139/296 (46%), Gaps = 21/296 (7%)

Query: 4   DW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DW   +  +  V   GSF  AA +++ + S+IS++I  LE ++G++L  R  R ++ TE 
Sbjct: 2   DWFQSVNSYIRVVEEGSFNAAARKMNTTSSAISKRIQWLEEKIGVQLLKRTTRSISQTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++         ++   E +  ++ P+G L+I  T+ +G   L   L +FL  YPDI
Sbjct: 62  GALFYQRAKLQLDGWQSVLDETRSVNLSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPDI 121

Query: 123 QIQLI--LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA---YAAPHYLKNC 177
           +IQL   L  +  ++S+D     + + + ++  + +  K   +  H    +AAP Y++  
Sbjct: 122 KIQLFTTLPGQLPELSLD-----LFISRELEQLNSLSFKATALFEHKATFFAAPSYIEKY 176

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P + ++L  HN++ +G+   + ++  N      R             +  ++      
Sbjct: 177 GMPENAEQLVNHNILIWGEKPSRELKLNNGKRMTLR-------GNFSTTNPEALFHGAKR 229

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI L  + ++K+      LV ++ +V     TVY  YP+      + K F +++
Sbjct: 230 GMGILLSNNVMIKEELRTGALVPVLPNVHADEATVYAYYPKLDYQHTRTKLFLDYL 285


>gi|269962394|ref|ZP_06176744.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832890|gb|EEZ86999.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 339

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 104/212 (49%), Gaps = 21/212 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA   SFT AA+ LHL+  +IS+QI  LE ++G  LF RH+RG+ LT +G +L 
Sbjct: 48  LWLFSQVAEHSSFTSAAKALHLTTGAISQQIIQLEEQLGFTLFERHSRGIRLTPKGLQLS 107

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + +   + +L  T  ELQ    KP  ++R+  T       L   L+ F L  PD+Q+Q+ 
Sbjct: 108 QSSQFHFSELGKTIKELQIE--KPHNEIRLKLTPSFAFKWLVPRLESFHLENPDLQVQIF 165

Query: 128 LDN-------KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-- 178
            +        KD D+++DY     R +    +  ++  +L+ +      +P YL++ R  
Sbjct: 166 AEGALVNSELKDYDVAIDYGSHPYRDKS---AERILNEQLLPV-----MSPKYLEDHRWL 217

Query: 179 EPLSIQELDKHNLITFGDLIP--KCMEDFNWL 208
           + L        +     D +P  K   D+ WL
Sbjct: 218 KTLKASPEQWRDATLLHDAMPWDKAPRDYEWL 249


>gi|167617622|ref|ZP_02386253.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 571

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 95/196 (48%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V    SF  AA QL +S ++++R I  LE  + ++L  R  R L+LTE G +  
Sbjct: 7   MRVFTRVVDLASFNLAARQLGMSAAAVTRSIGMLEAHLNMRLLNRTTRSLSLTEAGREYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  KL+  +  L +++  P G LRIA+++    + L   L  + +L+P +   + 
Sbjct: 67  DGCRAIIDKLDEIESNLVQATRDPRGTLRIASSMSFAASGLGPLLAAYRILHPRVAFDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+     D      + + SS+L+ R L TI     A+P YL     P +  EL 
Sbjct: 127 TFDTHVDMVEGAYDVCFSDDRHLASSTLVSRALTTIREVTVASPAYLARHGTPHNPAELG 186

Query: 188 KHNLITFGDLIPKCME 203
           +H+L+   D   +  E
Sbjct: 187 EHSLLAISDGTARSWE 202


>gi|332532112|ref|ZP_08407995.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038453|gb|EGI74897.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 307

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 18/299 (6%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  +   GS T AA+QL L+++  S  +  LET++ + L  R  R +
Sbjct: 1   MKVSFEQLKSMVVFAQIVEQGSLTAAAKQLGLTRAVASYHLKKLETQLEVTLLNRSTRTM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   +     +  +      +++    +P G L+I+  +++G  L+   +  F  
Sbjct: 61  ALTEAGIAYYERCRIITEQANAANQQIENIKSEPQGLLKISCPVNVGMQLIVPAINTFKR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP IQI L L +  +DI  +  D AIR    +  S+L   KL T+      AP Y  + 
Sbjct: 121 QYPKIQIDLQLTDDVVDIIKNGFDFAIR-GVALSDSNLQATKLTTMSTCICGAPEYFAHF 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQY 234
            +P +  EL +H  + +  L  K +       T+ +   +  I+    L  N+  +   +
Sbjct: 180 GKPKTPLELAEHQWVVY-QLGSKTL-------TLQKDGKKHDITMQGGLSTNNAAARTAF 231

Query: 235 CVLGSGIALLPDYIV--KDNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              G GI  +P Y    K    L+  I++D  +    +Y  +P     + KL+ F +++
Sbjct: 232 VEAGHGIGRIPLYDAWPKVQAGLLEIILDDYKSKDIELYGVFPPGAAGSKKLRLFIDYL 290


>gi|221212173|ref|ZP_03585151.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168258|gb|EEE00727.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 324

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 1/185 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF   A  GS   AA    +S  + S  +  LE  +G++LF+R  R L+LTE+G +L   
Sbjct: 9   VFVRAATLGSLRAAAVDQGISPQAASHAVMQLEKALGVRLFHRTTRKLSLTEEGERLFDS 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  L +   + + S  + +G LR++    LG  +L    + F   YPD+Q+ +  D
Sbjct: 69  AKPALAMLASALGDARRSKSEVAGLLRVSAPRALGLPVLWPCFEAFEHAYPDVQLDVRFD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+  + AD   R   P  + S I R LV I +   A+P Y+     P +I EL  H
Sbjct: 129 DQFTDLVTERADVGFRGGPPPSAGS-IARPLVPIQLIVCASPEYIARHGAPRTIDELAAH 187

Query: 190 NLITF 194
               +
Sbjct: 188 RCTGY 192


>gi|148559387|ref|YP_001259011.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148370644|gb|ABQ60623.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840]
          Length = 310

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 128/300 (42%), Gaps = 24/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VAR  SF+ AA++L L+Q ++SRQ++ LE ++G  LF R +R + L+E G  
Sbjct: 13  SALAAFDAVARHESFSAAADELSLTQGAVSRQVASLEEQLGAALFDRTSRNVVLSEAGRV 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        +      LQ  S      L +A     G   L   +  F+  YP I + 
Sbjct: 73  YLQAIGPALASIRAA--SLQVMSQMRGTTLNLAFLPTFGTRWLIPRIPRFVAQYPHIILN 130

Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKN--CRE 179
                   D   +  D AI + +P     + + L+   +  +      +P +LK+     
Sbjct: 131 FATRIGQFDFDREGLDAAIHIGQPDWPNAECTFLMDETVAPV-----CSPAFLKDHPVTS 185

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  +  L   N+ +     P   E  +W  ++   I  P    ++   + ++ Q CV G 
Sbjct: 186 PHDLLRLPLFNIAS----RPGAWE--HWFRSLG--ITTPVPGGMRFEQFSNVSQACVAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L+P ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 238 GMGLMPLFLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEVRN 297


>gi|317406295|gb|EFV86534.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 308

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 125/263 (47%), Gaps = 29/263 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  +G+ + AA +L ++++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDTKALTLLVEILDAGNLSEAARRLKMTRANVSYHLTQLERAVGMQLLRRTTRHVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL++    +  +L   +  ++     P GK+R++     GQ ++   L EF   YPDI
Sbjct: 61  GLKLYQHGRSIQDELAAAREAVETLGKTPQGKVRLSVPSGYGQFVMTPWLLEFKRAYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + ++ +N   D+  D  D A+R + +P    +L+ R+L  +   A A+P ++++   P 
Sbjct: 121 VLDVLFENSVDDLLRDEVDIAVRIMSEP--PHNLVARELGQVRYVACASPAFVRDRGLPD 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-------GEPRI-----SCLQVNSYL 229
              EL +  +I+               A + RP+       G+PR        +   +Y 
Sbjct: 179 KPAELARLPVIS--------------AAVIGRPLRLSAYYGGQPRQHVVLEPTIISRNYA 224

Query: 230 SIMQYCVLGSGIALLPDYIVKDN 252
            +    + G GI ++PDY+V D+
Sbjct: 225 FLRDAMLAGLGIGVVPDYVVHDD 247


>gi|182679053|ref|YP_001833199.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634936|gb|ACB95710.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 307

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 131/303 (43%), Gaps = 25/303 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF      GS   A  +L  S +++SR ++ LE  VG++L +R  R + L+E G +
Sbjct: 5   DAMKVFVAALDEGSLAGAGRRLGRSPAAVSRAVAFLEDHVGVQLLHRTTRSIKLSEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V   LE   I        P G L I   +  G+++L+  L  FL  YP +  +
Sbjct: 65  YAAACRRVLTDLEEADILAVGERSAPRGTLTITAPVISGEDILRPILDAFLDAYPTVSAK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +++  +  D A+R+   +  SS++  ++  +     A+P YL      L   +
Sbjct: 125 LYLLDRPVNLIDEGVDVALRIAH-LPDSSMVATRVGEVRRIIVASPRYLTEHPRILEPSD 183

Query: 186 LDKHNLITFGDLIPKCMEDF---NWL------ATVDRPIG-EPRISCLQVNSYLSIMQYC 235
           L KH +I         M  F   +W       +T+ R +   PR     VNS  + +   
Sbjct: 184 LAKHQII--------AMTHFGLDSWSFPPMEGSTIPRSVSFTPR---FIVNSVRAAVASA 232

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G G+  L  Y V +      L+ I+ D    S  V+    E   +  K++AF +F   
Sbjct: 233 AEGHGVTRLFSYHVAEKVREGQLLIILSDTEHTSLPVHVITQEGRLSVPKVRAFVDFAVP 292

Query: 293 KAR 295
           + R
Sbjct: 293 RLR 295


>gi|113868145|ref|YP_726634.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526921|emb|CAJ93266.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 305

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 13/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +   GSFT AA  L + +++ +  I  LE  VG +L  R  R +  T  G 
Sbjct: 4   FDALQLFTRIVELGSFTGAASALDMPRATATHAIKELEARVGARLLERTTRQVRPTLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +  V   LE  +  L      P G LR+         ++   + EF   YP I +
Sbjct: 64  AFYERSKRVLQDLEDAETSLSTQVANPRGTLRLDLHGTHATMIILPRIGEFRERYPHIDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D++ +  DC +R  +P + SSL+ R+L  +     A+P YL    +P    
Sbjct: 124 IVSSGDRLVDLAGEGIDCVVRAGQP-RDSSLVARRLAEMPEVLCASPAYLAAHGKPEHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSG 240
           EL +H  I  G         + +  TVD  + E +    IS      Y S     + G G
Sbjct: 183 ELAQH--IGVGFFSRNHDRRYPFTLTVDGEVQEFKARGWISVSDAECYTSA---ALAGCG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +P + V+++     LV ++E    P   V   YP   +   +++ F +++
Sbjct: 238 LIQVPRFRVEEHLRAGRLVPVLEAWPCPDLPVSARYPFHRQLAPRVRVFVDWV 290


>gi|91786569|ref|YP_547521.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91695794|gb|ABE42623.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 325

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 9/241 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR F  VAR  +F  A+E+L L+QS++SRQI  LE +VG+ LF+RH R + LT  G  L
Sbjct: 17  QLRAFEAVARHLNFRAASEELALTQSAVSRQIQALEEDVGVSLFHRHTRAVELTGAGGTL 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +    +++    ++++S+ + S  + + T        L   L+ F    PDI I+ 
Sbjct: 77  LRAVTPSLERIDGAVRQIRQSAGRKS--VALTTFASFASMWLIPRLEVFQRENPDIDIR- 133

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +D  D+ + +D +D  + LR  P         +L    +    +P  LK+        +
Sbjct: 134 -IDASDVAVDLDVSDLDLALRYAPASHMPPHAIRLFGEQITPVISPWLLKSGPRLKKPDD 192

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L    LI  GD      E   W   +D+    P++     L  N    ++Q  + G G+ 
Sbjct: 193 LAHFTLIEAGDAHRTHFEWLTWRRWMDQ-HATPKLEAKRWLYFNYAYQMVQAALTGQGVV 251

Query: 243 L 243
           L
Sbjct: 252 L 252


>gi|325293669|ref|YP_004279533.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325061522|gb|ADY65213.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 308

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 128/295 (43%), Gaps = 17/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + LRVF   AR  SFT A E+L ++Q+++S Q+  LE  VG  LF R AR + LTE 
Sbjct: 7   FPLNALRVFEAAARHLSFTKAGEELGMTQTAVSYQVKLLEENVGEPLFIRKARQVVLTEA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL    +E ++ L      ++++S      L I +T       L  +L  F L +P I
Sbjct: 67  GQKLAPKVAEAFNTLREAVDNVRDTS---DTTLTIHSTATFASRWLSRHLGAFQLEHPSI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L   +  ID +    D AIR         LI  +L    +     P    N  E  S
Sbjct: 124 AVRLDTSSALIDFTQSDCDVAIRWSSD-DGKGLIYHQL----LRGVYTPMLHPNLAE--S 176

Query: 183 IQELDK-HNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           I  L+K  +L+    + P  +    W   V  + P G  R    +++         +   
Sbjct: 177 IGGLNKPEDLLRLRIIDPGDIWWSQWFREVGIENP-GLDRYPRSRLSVQAFEAAAAIASQ 235

Query: 240 GIALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+A+L   +  D   L R+    E +       +  YPE  +N  K++ FR++I 
Sbjct: 236 GVAMLTPELYADEIALGRLYQPFEHLSNEGKNYWLVYPENRRNIRKIRLFRDWIL 290


>gi|254373222|ref|ZP_04988711.1| hypothetical protein FTCG_00805 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570949|gb|EDN36603.1| hypothetical protein FTCG_00805 [Francisella novicida GA99-3549]
          Length = 298

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 133/265 (50%), Gaps = 9/265 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LET+    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKAIGISPPVVSKQIQILETKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 64  LLYEKASLILNELEATEEKIFAEDILIDSELKISAPNSFGIKYLCNIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+ +     A+  YLKN   P +I+
Sbjct: 124 NINLSDSYINIIDEDFDLVIRI-GALDDSNLITKKLMPMPSLLCASEQYLKNYGIPKTIK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L+ H  I + +       +   L +V++  I   R   +  N+ + ++Q C+ G GIA 
Sbjct: 183 DLENHLFIQYNN---HSSSNRIILESVNKTEIINVRQRIVTNNAEM-MLQGCLDGLGIAK 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITP 265
           LP + + D   +  LV ++ D   P
Sbjct: 239 LPLFEIIDKIHDKKLVHLLPDARNP 263


>gi|146338914|ref|YP_001203962.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146191720|emb|CAL75725.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 301

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 146/298 (48%), Gaps = 15/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +  + + VF+ V   G  T AA  L + +SS+S+ ++ LE ++GI+LF R++R + +T
Sbjct: 1   MKWRIEDIPVFHAVVADGGMTGAARTLGMPKSSVSKSVARLEQDLGIRLFDRNSRRVRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    +   ++  ++      +      PSG+L +A      + +L  NL EF   YP
Sbjct: 61  REGELFFQQCQKILDQVSEADAVMTGLVGVPSGRLSVALPPAFCEEILAPNLAEFHRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ +    + +D+  D  D A+ +    + S L Q+ L+   +    +P YL      
Sbjct: 121 RIELDIEALTRSVDMLADRFDIAVVVGVQ-EDSELAQKVLIGGRLIWVTSPAYLAAHDIG 179

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             ++ L+ H LI    +GD     ++    L   D  +G P+++  ++N+ +++ +    
Sbjct: 180 DDLRALEHHLLICERRYGDRT-LTVKQHGHLVRFD--VG-PQVT--RINNPVAVRRAVAH 233

Query: 238 GSGIALLPD-YIVK--DNPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+G++ LP+ Y V+      LV I +DV+  T +  +   +P     + + +AF +F+
Sbjct: 234 GAGLSFLPEHYCVELLSEGRLVEIGKDVVFDTRAAQLTAIFPSRKLISSRARAFLDFL 291


>gi|26990205|ref|NP_745630.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985148|gb|AAN69094.1|AE016543_3 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 310

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 123/293 (41%), Gaps = 18/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++E G +  
Sbjct: 7   MRTFTRVVECGSFAAAANALDISAAQVSRIVAELENQLQTRLLHRTTRRLRMSEAGERFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E    E + + + P G LR+     +G  LL   +  + +LYP++ I+L 
Sbjct: 67  ERARQIMLLTEEAVGEARGAHLTPRGHLRLHCPHGMGL-LLMPLVAGYNMLYPEVVIELT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D   +  D  I +   +  S LI   L  I     AAP YL     P   ++L 
Sbjct: 126 LSQRNPDPLAEGHDVVITVDGALPDSQLIAVPLGNIFSIPCAAPGYLDTHGVPERPEDLH 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +      P    D+ +   VD+ +  P  S    N   +++    LG GI LLP Y
Sbjct: 186 GHRCLRMA--YPMYEGDWVFPQGVDQCVIAPNDS-FSTNVADAMLVASELGMGIGLLPFY 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              +      L R++         +Y  YP            R+++  K R W
Sbjct: 243 TASEAIGQGRLCRLLAPYRLRESALYAMYPS-----------RHYLDAKVRTW 284


>gi|307947169|ref|ZP_07662504.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307770833|gb|EFO30059.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 317

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 128/289 (44%), Gaps = 6/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V   G+ + AA  L +S +  S +IS LE  + ++LF R  R L+ TEQG+ 
Sbjct: 5   ENIRTFIRVYELGNMSAAARDLRISSAVASSRISQLEEHLNVRLFQRTTRALSPTEQGNL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +E  + E+   + +P G L IA  I LGQ  L   +  F    P I I+
Sbjct: 65  FYNGAVKIIDAVEEAEAEISNVTRQPRGTLFIAAPIGLGQRFLAPLIPLFKNDNPLIDIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A  L  P + SSL  RK+        A+P YL+    P + +E
Sbjct: 125 LRLSDRKVDLAGEGLDAAFFLGVP-EDSSLRIRKVADCDRVLCASPAYLERKGVPKTSEE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALL 244
           L            P   E F W+      + +  +     + +  ++    L G GI L 
Sbjct: 184 LVDGTHDCLNIRYPGAPE-FQWMLQSQSGVKKVAVRGPFESDHGDVLTSWALDGHGIILK 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P + V +   N  L  ++E+       + F Y        K++ F +F+
Sbjct: 243 PVFEVAEHLSNGALRTVLENEPPVPVQMAFLYTHKKYQDPKVRLFIDFV 291


>gi|269961867|ref|ZP_06176224.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
 gi|269833445|gb|EEZ87547.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
          Length = 301

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 97/187 (51%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LT+ G+  H
Sbjct: 1   MTLFVSIVKNQGLAAAGRELGLSPATVTARLQSLEDRYGVKLLNRSTRHISLTDSGAMYH 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   ++ T+  LQ  + +  G L+I+   D+G+  +   L EF  LYPD+   L 
Sbjct: 61  QACLEIIDSVKETENLLQTGTKEVRGTLKISAPRDIGKQYISPILSEFSQLYPDVIPYLY 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++   +++    D  IR  + +  S+LI RKL +      A+P YL     P++ Q+L 
Sbjct: 121 LNDNLSNLAESGLDIVIRYGE-LADSNLISRKLASSRRVLCASPQYLAKKGTPITPQDLA 179

Query: 188 KHNLITF 194
           +H+ +  
Sbjct: 180 QHDCLAM 186


>gi|90578475|ref|ZP_01234286.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90441561|gb|EAS66741.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 301

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 122/242 (50%), Gaps = 9/242 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F +V    SF+ AA  ++L  S++SRQ+S LE  +G++L  R  R + LT +G    
Sbjct: 7   IETFQLVVEHKSFSGAAHAMNLVPSAVSRQVSELEKWLGVRLLQRTTRSIGLTTEGRAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   +E  +  +  ++    G+LRI   + LG+ +L   L  F   +P++++ L 
Sbjct: 67  AKMALISQNVEDLK-GVTPTTATLKGELRITAPLILGKYILPPILSLFRKQHPEVKLSLF 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+++++  +  D A+R+ + +  S LI R L    +   A P+Y++   E L  Q+L 
Sbjct: 126 LTNRNVNLIEEGYDLALRVGELV-DSELIARSLGEYKIKTVATPNYIQRNGEVLIPQDLK 184

Query: 188 KHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           +H  LI      P+      W   ++  + + +++  ++ N    + ++C+   GI  LP
Sbjct: 185 QHTCLINSARQTPR-----RWTYQMNDKVIQIKVNGEIESNDSDVLREFCLQDQGILQLP 239

Query: 246 DY 247
           D+
Sbjct: 240 DF 241


>gi|73541136|ref|YP_295656.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72118549|gb|AAZ60812.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 315

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 133/297 (44%), Gaps = 19/297 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ A+    + +S +SR+I+ LE ++G++L  R  R + +T  G
Sbjct: 3   DLNDLSLFAQVVEHGSFSAASRATGIPKSRLSRRIAQLERDLGVQLLRRTTRQVRVTPLG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E     ++++  +P G LR++  + + Q LL   +  F+   P ++
Sbjct: 63  ESYYERCRAMLKEAEAAHEVIEQARDQPGGTLRVSCPVAIAQILLAPAIGHFMRANPAVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   N+ +D+  +  D ++R+R  ++ SSL  R      +   A+P  L +   P + 
Sbjct: 123 IELEATNRRVDVIGEGYDLSLRVRDVLEDSSLAVRTFGESQLMLVASPGLLDSIGRPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYCV 236
           Q LD    +       +   D   +  +    GE       PR   L  + +  + +  +
Sbjct: 183 QALDGMPGVG------QKPHDGKHVWVLGCKSGETIQIAYDPR---LVTDEFSLLREAAI 233

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+A+LP    +   D   L  ++     P  T++  +P     T  ++ F +F+
Sbjct: 234 AGIGVAMLPRMYCRDAIDAGELELLLPQWEMPVGTLHAVFPSRKGVTPAVRRFLDFL 290


>gi|323498845|ref|ZP_08103828.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323315957|gb|EGA68985.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 299

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 4/188 (2%)

Query: 1   MSFDWDK-LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ + +K L  F  V +  SF  AA+   +  S +SR I  LE ++G+ L  R  R L+L
Sbjct: 1   MAIELNKQLMAFVDVVKFESFAEAAKHRDMLPSLLSRNIKALEDKLGVVLLKRTTRALSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIEL-QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           TE G  +++  + V  +LE    +  Q  S   +G +R+     L QN +   + +    
Sbjct: 61  TEAGETIYQ-QALVLKELENKMNDFAQNYSSAETGLVRLTCASHLSQNFILPTIGDVQSE 119

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP I+ ++  D++ +DI  +  D AIR+ KP Q SSLI +KL + H+   A+P Y++   
Sbjct: 120 YPKIRFEVEYDDRRVDIIKEEFDMAIRIWKP-QDSSLIGQKLRSTHLLIVASPDYIQRHG 178

Query: 179 EPLSIQEL 186
            P+++++L
Sbjct: 179 MPINLEQL 186


>gi|300714969|ref|YP_003739772.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299060805|emb|CAX57912.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 298

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 120/243 (49%), Gaps = 6/243 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  + S+T AA+ L LS+SS+S++IS LE  +G KL  R  R + +T+ G   +  
Sbjct: 12  IFAKVVETLSYTEAAKLLGLSKSSVSKEISALEVRLGTKLLQRTTRKIVVTDVGMTWYHY 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + +  ++++  + +++   +P+G LR+   +  G   +   L +F+     + + L L 
Sbjct: 72  CARILSEVKSAGLFIRQYHEEPTGSLRVVAPVTFGCQCIVPVLNQFVANNLHVSVDLDLT 131

Query: 130 NKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +++  D  D AI +R+ P + +      L+ I    +AAP YL+         +L +
Sbjct: 132 DRPVNLVDDNVDLAIVIRREPPEHAHCT--PLMDIGWGLFAAPDYLQRFPPITQPDDLPR 189

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H+ I F    P       +     +   E R S  + N+  +++   +  SGIA LP+Y+
Sbjct: 190 HDFILFRG--PAHTISLPFRKEKQKLDIEVR-SRFRANNSTALLNSAIANSGIAYLPEYV 246

Query: 249 VKD 251
            ++
Sbjct: 247 AQE 249


>gi|91795092|ref|YP_564743.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91717094|gb|ABE57020.1| transcriptional regulator, LysR family [Shewanella denitrificans
           OS217]
          Length = 301

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F   A  G F+ A   L + +S +SR+I+ LE  +G+KL YR  R   +T+ G
Sbjct: 3   DLNDFYYFVKTAEYGGFSPAGRALGIPKSKLSRRIALLEERLGVKLIYRSTRQFKVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       +  + E  +  ++  + +PSG +++   I L    ++  L +F+L YP+I 
Sbjct: 63  LKFLEHCKAMLIEAEAAEDVIKSITSEPSGTIKLTCPIALLNAHIRYVLADFMLKYPNIV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S LI + L        A+P  +     P  
Sbjct: 123 IHLEASNRRVDLISEGVDIAIRVRPPPLEDSELILKVLSDRGRRLLASPSLVDKYAMPSK 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +   +  G+  P+    +         I             L++ +  V G G+ 
Sbjct: 183 PCDLAEWPSLGLGE--PQYQHSWTLYGPDGDAINLNHSPRYVTTDMLALREAAVKGVGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP  +  +   + +L+ ++ + +     ++  YP        ++A  +F+
Sbjct: 241 LLPSILATEQLKDGSLIHVLPEWLPKREIIHLVYPSRRGMLPSVRALIDFL 291


>gi|83954697|ref|ZP_00963408.1| probable transcriptional regulator [Sulfitobacter sp. NAS-14.1]
 gi|83840981|gb|EAP80152.1| probable transcriptional regulator [Sulfitobacter sp. NAS-14.1]
          Length = 313

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 16/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F    R  +F  AA++L ++Q ++++Q+ GLE  + ++LF R  RGL  TE+G  
Sbjct: 11  NGLRAFAAAGRHLTFRAAADELGVTQGAVAQQVRGLEDHLNLRLFLREPRGLAFTEEGRT 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   S  + ++      L+ +   PS  + I+ T       L   L  F   +P I ++
Sbjct: 71  YHIAISRAFDQMADATDALRTA---PS-HVTISVTPTFASKWLIPRLAAFTQAHPGIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    +      D  D A+R   P   +SL    L    + A  APH  +    P+    
Sbjct: 127 ITATERVSSFHADGIDLAVRQGNPPFGASLRADLLFEQQIVAVCAPHLAEALNTPMDAAG 186

Query: 186 LDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           + +  L+    DL P+ ++         R +  P    L+ N     +   + G GIAL 
Sbjct: 187 IAEATLLHDTHDLWPQFIK-----TVFGREV--PTARGLRFNQTTLSLDAALAGQGIALA 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             ++V+ +     LV+ +E  ++     Y   P     +G     R+++  +ARD
Sbjct: 240 NRFLVQRDLRAKRLVQPIEGALSGGSGFYLLSPRQGSPSGAAH-VRDWLLGRARD 293


>gi|254181987|ref|ZP_04888584.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184212525|gb|EDU09568.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 321

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G +
Sbjct: 10  NALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGGR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S  +   +L ++T        +   +  F+  +P+I ++
Sbjct: 70  YAQQVRAALALLADATREVRAS--ERDKRLVVSTLPSFAARWITPRIGPFIERHPEIDLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 128 LRASDSLVDFARDDVDVAIRFGHGVYPGLHVE-PLLDETFFPVCAP-TLNGGMLPETPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 186 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 240

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++A R+++ 
Sbjct: 241 RSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRSWLL 289


>gi|126441649|ref|YP_001057494.1| DNA-binding transcriptional activator GcvA [Burkholderia
           pseudomallei 668]
 gi|126221142|gb|ABN84648.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 321

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G +
Sbjct: 10  NALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGGR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S  +   +L ++T        +   +  F+  +P+I ++
Sbjct: 70  YAQQVRAALALLADATREVRAS--ERDKRLVVSTLPSFAARWITPRIGPFIERHPEIDLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 128 LRASDSLVDFARDDVDVAIRFGHGVYPGLHVE-PLLDETFFPVCAP-TLNGGMLPETPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 186 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 240

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++A R+++ 
Sbjct: 241 RSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRSWLL 289


>gi|261252194|ref|ZP_05944767.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
 gi|260935585|gb|EEX91574.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
          Length = 295

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 21/204 (10%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
           +VAR  S T AA++L L+  ++S+Q+  +E ++G  +F RHARG+ LTEQGSKL  V S 
Sbjct: 14  IVARHQSLTSAAKELSLTVGAVSQQLQQIEEKLGFVVFERHARGIRLTEQGSKL--VEST 71

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL---- 128
            +H     +   Q S V    ++R+  T       L   L +F  LYPD+QI        
Sbjct: 72  SHHLAAIEENVFQLSHVSERKQIRLKLTPSFAFKWLVPRLDKFHKLYPDVQIHTFAEGAL 131

Query: 129 ---DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              DN++ DI++DY     + +    +  L++  L+ +      +P YL++   PL +  
Sbjct: 132 VDSDNRNFDIAIDYGPIPYKHQS---AELLMEESLIPV-----ISPSYLQS--HPLRLDN 181

Query: 186 LDKHNLITFGDLIP--KCMEDFNW 207
               +++   D++P     +D  W
Sbjct: 182 DCWRDVVLLHDVMPWAGAAKDHEW 205


>gi|171321296|ref|ZP_02910258.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171093423|gb|EDT38606.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 310

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 11/256 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS T A  +L+L+ ++ S +++ LE ++  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLTAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     +GK+R+++T D G+N L   L  F  L+P +   L 
Sbjct: 67  NCCRQALQALDDAHALLQEGRNVVAGKVRLSSTSDFGRNQLLDWLDAFTTLHPGVTFSLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R+L        AAP +++    P      D
Sbjct: 127 ASDSASNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFVERHGVP-----AD 180

Query: 188 KHNLITFG-DLIPKCMEDFN-WLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIA 242
            H+L  F  ++I       N W  T    +     P  +  + N      ++ + G GIA
Sbjct: 181 PHDLARFPCNVITIASGPMNTWRFTRGDEVQTHTVPVSTAFETNDGGLTREWTLRGHGIA 240

Query: 243 LLPDYIVKDNPNLVRI 258
           L   + + D+    R+
Sbjct: 241 LKSLWDIADDVRAGRL 256


>gi|163843353|ref|YP_001627757.1| LysR family transcriptional regulator [Brucella suis ATCC 23445]
 gi|163674076|gb|ABY38187.1| transcriptional regulator, LysR family [Brucella suis ATCC 23445]
          Length = 310

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 128/300 (42%), Gaps = 24/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VAR  SF+ AA++L L+Q ++SRQ++ LE ++G  LF R +R + L+E G  
Sbjct: 13  SALAAFDAVARHESFSAAADELSLTQGAVSRQVASLEEQLGAALFDRTSRNVVLSEAGRV 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        +      LQ  S      L +A     G   L   +  F+  YP I + 
Sbjct: 73  YLQAIGPALASIRAA--SLQVMSQMRGTTLNLAFLPTFGTRWLIPRIPRFVAQYPHIILN 130

Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKN--CRE 179
                   D   +  D AI + +P     + + L+   +  +      +P +LK+     
Sbjct: 131 FAPRIGQFDFDREGLDAAIHIGQPDWPNAECTFLMDETVAPV-----CSPAFLKDHPVTS 185

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  +  L   N+ +     P   E  +W  ++   I  P    ++   + ++ Q CV G 
Sbjct: 186 PHDLLRLPLFNMAS----RPGAWE--HWFRSLG--ITTPVPGGMRFEQFSNVSQACVAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L+P ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 238 GMGLMPLFLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEVRN 297


>gi|87118559|ref|ZP_01074458.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86166193|gb|EAQ67459.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 317

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 132/274 (48%), Gaps = 11/274 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   VA   S T AA QL +S S+ S  +  +E  +G +LF R  R + L+ +G +  
Sbjct: 6   LQVLIKVAELHSITAAANQLDMSSSAASVALKRIEESLGAQLFVRTTRQIRLSPEGERYL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  +    L+  Q+ + E     +G++++A + ++G+NL++  L + +  +P+++++L 
Sbjct: 66  PICQQALDLLQQGQMAINEELQSINGEVKMAMSSEMGRNLMRILLNDVMSKHPNLKLRLH 125

Query: 128 LDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +  +D   D  D A+R   ++ +Q+ +L   K+  I     A+P Y+     P +++E
Sbjct: 126 VSDSRVDFYRDGVDVALRAMTKEAVQNLNLYGFKICNIPHFLCASPSYISEFGAPDTLEE 185

Query: 186 LDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +HN + +   +++    E +         +   R+    VN    + ++CV G GIA 
Sbjct: 186 LSEHNTLLYKLYEVMHDAWEFYQGEDKYKIKVKSDRV----VNDGDIVRRWCVDGVGIAK 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
                V  +     L RI+ D   P   ++   P
Sbjct: 242 KSAIDVSQDLLAGRLKRILTDYQIPMTEMWLVLP 275


>gi|218663368|ref|ZP_03519298.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 300

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 1/187 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  VA   SFT AA +L ++ ++IS  I  LE  VG  LF R  R + LTE G  
Sbjct: 27  EGIVVFTRVAERRSFTAAALELGVTPAAISWTIKQLEARVGAPLFTRTTRSVGLTEAGQV 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S     +E      Q  S  P G LR++    + Q L++  LK F   YPDI+++
Sbjct: 87  FLEQASAGVAYVEAAYEAAQRLSDNPRGLLRLSVPY-VAQTLIEPMLKGFTDAYPDIELE 145

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +++ +D++ +  D  IR+ + I    +  R           +P Y     +PL  +E
Sbjct: 146 LVFEDRFVDVAGEGYDAGIRIGEMIAQDMVAVRLTPASPRVVVGSPAYFAERGKPLRPEE 205

Query: 186 LDKHNLI 192
           L++H+ I
Sbjct: 206 LERHSCI 212


>gi|160934333|ref|ZP_02081720.1| hypothetical protein CLOLEP_03204 [Clostridium leptum DSM 753]
 gi|156867006|gb|EDO60378.1| hypothetical protein CLOLEP_03204 [Clostridium leptum DSM 753]
          Length = 288

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 120/261 (45%), Gaps = 21/261 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  K   F   A  GSFT AAE L+ SQSSISR I+ LE E  + L  R   G+ LT
Sbjct: 1   MDMNLQKYISFVKTAECGSFTKAAELLNYSQSSISRMINDLEREWKVALLERSVGGVKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G KL      V  + E  Q+E+ E +   SG +RI T   +  + L   +KEF   YP
Sbjct: 61  SDGMKLLPYAKSVVAEFEKLQMEIDELNGLQSGLIRIGTFSSVATHWLPNIIKEFQKAYP 120

Query: 121 DIQIQLIL-DNKDID--ISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHY 173
           +I  +L+L D  +I+  I     DC   LR P    +Q+  L Q KL+ I        H 
Sbjct: 121 NIDYELLLGDYTEIEEWILEGRVDCGF-LRLPTHPELQTIFLEQDKLMAI----IPENHR 175

Query: 174 LKNCRE-PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           L  C + P++    D   L+  G    +  E F      +R    P++     + Y +IM
Sbjct: 176 LAECEKFPVAALCDDPFMLLEKGAK-AEISEIF------ERCGLTPKVHFTTWDDY-AIM 227

Query: 233 QYCVLGSGIALLPDYIVKDNP 253
                G GI++LP  I+K  P
Sbjct: 228 SMVESGLGISILPQLILKRVP 248


>gi|152970270|ref|YP_001335379.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955119|gb|ABR77149.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 288

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 2/186 (1%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            +AR  SF+ AA +L +S S++S  + GLET +G++L  R  + +T T  G +L +   +
Sbjct: 2   AIARHRSFSRAAIELGVSASALSHALKGLETRLGVRLLNRTTKSVTPTAAGEELVQSVLQ 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
            +  +E     L      P+G++RI   ++    LL   +  F+  YPDI+I ++  N+ 
Sbjct: 62  PFDTIEGALESLNRYRNTPTGRIRINAAVEAANLLLAPVMPAFMDRYPDIEIDIVASNRM 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           +D++    D  IR    +    + +R    I     A+P YL+    P    +L  H  I
Sbjct: 122 VDVTDAGFDAGIRYGGTVPEDMVARRLSADIRWVIAASPDYLERYGTPEHPDDLLHHRCI 181

Query: 193 T--FGD 196
           +   GD
Sbjct: 182 SNRLGD 187


>gi|30020498|ref|NP_832129.1| LysR family transcriptional regulator [Bacillus cereus ATCC 14579]
 gi|229127805|ref|ZP_04256791.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-Cer4]
 gi|29896049|gb|AAP09330.1| Transcriptional regulators, LysR family [Bacillus cereus ATCC
           14579]
 gi|228655570|gb|EEL11422.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-Cer4]
          Length = 300

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 132/286 (46%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKVLLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L   H+       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISIPLYKSHLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    +  N+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKLNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP    D++   N   ++I     TP   +   Y
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPIIEIGLIY 274


>gi|206580866|ref|YP_002238471.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288935458|ref|YP_003439517.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290509495|ref|ZP_06548866.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206569924|gb|ACI11700.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288890167|gb|ADC58485.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289778889|gb|EFD86886.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 300

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 1/192 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ L++F  V    SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+ 
Sbjct: 5   LDFNALKIFIAVVERDSFVGASKALEMPTSNVSRCISQLEDKLNLQLIERSTRHMKLTQA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   +PD+
Sbjct: 65  GHLLYTRAKPLLEALEQTETELTLRQMQFKGPLRICIPNEIGPVLLGSVVADFACQHPDL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I  + +    +   D  D A+ + R  +  S  I R LVTI     AAP  ++    P 
Sbjct: 125 EISCVTNLSGYESLRDDLDLAVIVSRGQMDDSDYIARHLVTIPCTIVAAPSVIQRYGTPS 184

Query: 182 SIQELDKHNLIT 193
            IQ+ ++   IT
Sbjct: 185 RIQQFEELPCIT 196


>gi|206580286|ref|YP_002238472.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288935459|ref|YP_003439518.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206569344|gb|ACI11120.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288890168|gb|ADC58486.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 301

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 121/275 (44%), Gaps = 7/275 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +R+F  V   GS + AA  L + Q ++S +I  LE  +G +L  R+ R ++LT  G+
Sbjct: 4   FSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTHSGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +       E   + + E +    GK+RIA     G++LL   L +    +P++Q+
Sbjct: 64  VFYERSKTAVQAAEHA-LSVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPELQV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +I +++ ID   +  D ++RL   +     + R L  +     A+P  L     P + +
Sbjct: 123 DVIFNDRVIDPVTEGVDLSLRLGD-VSEGFFVARPLGAVRRVLVASPALLAKMGHPDTPE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  +       +          +A+ D+ I  P     Q   + S++ + + G  I +L
Sbjct: 182 ALTDYPFAAVSGVF--ASNRIQLIASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEA 276
              + +   ++  L+ ++     P F+ +  +P A
Sbjct: 240 QSPVCRKEMEDGALIPLLSHYPIPPFSAWLLHPPA 274


>gi|170680003|ref|YP_001745068.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|218706419|ref|YP_002413938.1| hypothetical protein ECUMN_3256 [Escherichia coli UMN026]
 gi|293406413|ref|ZP_06650339.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298382149|ref|ZP_06991746.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300896189|ref|ZP_07114738.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|170517721|gb|ACB15899.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
 gi|218433516|emb|CAR14419.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|291426419|gb|EFE99451.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298277289|gb|EFI18805.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300359923|gb|EFJ75793.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
          Length = 298

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 124/261 (47%), Gaps = 9/261 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+    F ++A  GS++ AA +  +S+S +SR+++ LE  +G++L  R  R L LT  
Sbjct: 2   IDWNDYYYFALIADEGSYSQAALRAGVSKSVLSRRMAALEERLGVRLIQRTTRRLALTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  + E  +  +  +   P G LR++  + + +      + EF+  +P  
Sbjct: 62  GEQFAVECRALVAQGERARAVVMAAQESPQGMLRVSAPVFMAETWFGEFVSEFIARWPLA 121

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++QL+  N+ +D+  +  D A +     +  S+L  +KL T      A+  +L   R P 
Sbjct: 122 KVQLLAINRPVDMVAEGIDIALVTASGALADSTLHYKKLHTQADILVASSQWL--ARHP- 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +D  N +  G L         W L   D+ I     + LQ N+   ++Q  + G+G
Sbjct: 179 QVKAIDDLNRVD-GILRLTNNGGSQWQLMNGDQEITLHPEARLQTNNIRVMLQAVLGGNG 237

Query: 241 IALLPDYIVKD---NPNLVRI 258
           +ALLP +  K    N  LVR+
Sbjct: 238 VALLPQFACKQGLANGELVRL 258


>gi|145635677|ref|ZP_01791373.1| LysR protein [Haemophilus influenzae PittAA]
 gi|145267072|gb|EDK07080.1| LysR protein [Haemophilus influenzae PittAA]
          Length = 261

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 93/189 (49%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L  F  +A++ SF  A + L +S S++S  +  LET + ++LF R  R ++LTE G
Sbjct: 3   NFNELNYFLTLAQTQSFVKAGQLLGISSSALSHSMKNLETRLNLRLFNRTTRNVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +Y  +      L +    PSG +RI       + +L   LK  L  YP I+
Sbjct: 63  QQLFDQLFPLYQAINQEVDALNDFLNTPSGLIRINAPSMAAEAVLYPKLKPILNQYPKIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++D++  DI  +  D  +RL   +    +       + M   A+P YL     P +I
Sbjct: 123 LEIVVDDRWADIVKEGFDMGVRLGNKVAKEMIAVPISAPLKMVLVASPDYLAQYGSPKNI 182

Query: 184 QELDKHNLI 192
             L +H LI
Sbjct: 183 DALQQHRLI 191


>gi|187920490|ref|YP_001889522.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718928|gb|ACD20151.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 318

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 140/289 (48%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  +AR GSF  A+ ++ LS S +S++I+ LE  +G+KLF R  R + +T  G    
Sbjct: 18  LQLFCNIARRGSFVAASTEMGLSPSHVSKRIAMLEVSLGVKLFQRTTRRVRVTSDGEAAL 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   ++       +   +  G LRI+T++ LG+  +   L      +P+++I L 
Sbjct: 78  QWAQKILDDVQGMADAFADRRTELRGLLRISTSLRLGRKHVSPILALLRQRHPNLEIWLE 137

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D+  +  D  +R+   +    LI  K+V       A+P YL+    P  + EL 
Sbjct: 138 LLDRRADLVGENFDIDVRV-GEVHEPHLIAHKMVESARILCASPEYLERRGLPRELAELA 196

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLS--IMQYCVLGSGIALL 244
           +H+ + F     +  +D   +  +  P GE  +     V S LS  ++Q+   G G+ ++
Sbjct: 197 QHDCLLF-----RGRDDRFGVWRLSGPDGEKSVKVTGTVASNLSDIVVQWARDGYGVVMV 251

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V ++     LVR++ + +  S  V+    E L ++ K++    F+
Sbjct: 252 SIWDVAESLRAGELVRVLPEYMQ-SADVWAVTAERLSSSAKIQVCIEFL 299


>gi|90410124|ref|ZP_01218141.1| hypothetical transcription regulator LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90329477|gb|EAS45734.1| hypothetical transcription regulator LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 316

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 14/176 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR GSFT AAE LH++  +IS+QIS LE E+   LF RH+RG+ LT +G++L+
Sbjct: 14  LATFETVARFGSFTQAAEHLHITTGAISQQISHLEQELSFVLFERHSRGIRLTNEGNQLY 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL- 126
            V ++    +      +Q++     G++ +  T       L   L +F   YP+I+I   
Sbjct: 74  LVVNQSLTDIRGVINRIQKAH-HAEGEIHLKLTPSFAFKWLVPRLHDFYTQYPEIKIHTF 132

Query: 127 ----ILDNKD--IDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
               ++D+ D   D+++DY     ++ R   Q S L+  KL+ +      +P Y+K
Sbjct: 133 AEGALVDHNDTNFDLAIDYGQTPYLQTRNKSQVSLLMAEKLLPV-----MSPDYMK 183


>gi|254248907|ref|ZP_04942227.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875408|gb|EAY65398.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 306

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 92/187 (49%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + V  +L+  ++E Q  + +P G LR+        N L   +  F   +P++++ 
Sbjct: 65  IYERCAAVLDELDALEVEAQTHTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPNVRLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  I +   + S S + R +  I +   A P YL+    P +  +
Sbjct: 125 VTLTERPVDLVGEGYDIGIVVPYMLTSESTVVRLVERIPVVIVATPAYLQAHARPETPAD 184

Query: 186 LDKHNLI 192
           L  H  +
Sbjct: 185 LANHPFV 191


>gi|327485871|gb|AEA80277.1| Transcriptional regulator, LysR family [Vibrio cholerae LMA3894-4]
          Length = 312

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 121/257 (47%), Gaps = 30/257 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +PSG L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMLNAAQQA-IEISSSEHAEPSGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP----- 180
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P     
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPTHPTD 189

Query: 181 ------LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
                 L + E DK ++ TF     K  E      +    + + ++    V ++L     
Sbjct: 190 LAEHDCLYLAETDKDHIWTFA----KGRETHTVAVSGRYAVNQSQLRLTGVKNHL----- 240

Query: 235 CVLGSGIALLPDYIVKD 251
                GI +  D++V+D
Sbjct: 241 -----GIGIFHDFVVQD 252


>gi|296102899|ref|YP_003613045.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057358|gb|ADF62096.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 300

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 131/283 (46%), Gaps = 8/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +  +GS + AA QL  +Q+++SR++  LET +G++L  R      LT+ G + +
Sbjct: 1   MRTFVRIVEAGSLSAAARQLATTQATVSRRLQSLETMLGVRLILRTTHTTRLTDDGERCY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V       + E+ ++  +P G LR+      GQ+ L   L EFL  YP + I+ +
Sbjct: 61  QHARRVIDSWLALEDEVGQTEDEPVGVLRVRAPHAFGQDQLLKPLTEFLQRYPQLSIEWM 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++  D   D  DCAIR+   +  ++ +   L  +     A+P  L       + ++L 
Sbjct: 121 LNDRSADFLGDNLDCAIRVGVEVDPAT-VSVLLAEVPRSVVASPALLARFPAVNTPEDLQ 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +   I       + +E F+  +     +   PR+S    +S        + G G+A++  
Sbjct: 180 QLPWIAISSFYQRHVELFHDASPATARVAITPRLST---DSLYVARNTALTGLGVAVVSS 236

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + V+++     LV ++ +    +  V+  YP +     +L+ F
Sbjct: 237 WTVQEDIREGRLVHLLPEWQPAALPVHLVYPWSRYYPARLRRF 279


>gi|239831536|ref|ZP_04679865.1| HTH-type transcriptional activator ampR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823803|gb|EEQ95371.1| HTH-type transcriptional activator ampR [Ochrobactrum intermedium
           LMG 3301]
          Length = 350

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 133/296 (44%), Gaps = 30/296 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L ++Q+++S Q+  LET + + LF R  RGL LT +G  
Sbjct: 68  NSLRAFEASARHLSFTKAAIELCVTQAAVSHQVKSLETRLNVTLFERLPRGLMLTSEGET 127

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     + + ++  T    +    +    LR+     L    L   L +F   YP I ++
Sbjct: 128 LLPTLKDAFDRIAGTLERFEAGHYRE--ILRVGAVGTLAVGWLLPRLPDFQKSYPFIDLR 185

Query: 126 LILDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           L  +N  +DI+ +  D AIR        I ++ L++  L  + +     P   +  R P 
Sbjct: 186 LSTNNNRVDIAAEGLDYAIRFGSGAWHGIDATRLLEAPLSPLCI-----PELARELRTP- 239

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL----ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
              +L +H L+       +  E   W      T D P+  PR   +  +S L++M+  + 
Sbjct: 240 --ADLARHTLLRSY----RADEWTQWFLAAGVTGDMPL--PR--SIMFDSSLAMMEAAMQ 289

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GIAL P  +      +  +V+  E  +T   + +    ++   T  + AFR ++
Sbjct: 290 GAGIALAPPLMFSRQLLSETIVQPFETTVTMG-SYWLTRLQSRAGTEAMSAFRGWL 344


>gi|256389613|ref|YP_003111177.1| LysR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256355839|gb|ACU69336.1| transcriptional regulator, LysR family [Catenulispora acidiphila
           DSM 44928]
          Length = 297

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 132/308 (42%), Gaps = 33/308 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             + +LR F  VA +  FT AAE LH++Q S+S+QI  LE E+G  LF R    +TLT+ 
Sbjct: 1   MQFHQLRYFIAVAETRHFTRAAEALHVTQPSLSQQIRALEHELGADLFLRARGNITLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L  +   +    +  + E+QE +    G +R+  T  L   LL   L+ +   YP I
Sbjct: 61  GEALLPMARRILADADAARREVQELAELRRGHVRLGATPSLCTGLLPDVLRTYHRRYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLR---KPIQSSS-------LIQRKLVTIHMHAYAAPH 172
           Q+ L+ ++   D+  D A  A+ L     P+ S S       L++  LV +       P 
Sbjct: 121 QL-LVQESGSHDLVRDLARGALDLALVVLPLPSPSPALTTEELLREDLVVVSAPNLPPPG 179

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSI 231
             +  R    I +L+   LI F     +   D   L     R  G   +  ++     ++
Sbjct: 180 DGRQVR----IADLEHEQLIMF-----RHGYDLRDLTVAACRAQGFEPVFAIEGGEMDAV 230

Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + +   G G+A++P  + ++           + PS  V    P AL  T  L A R  + 
Sbjct: 231 LGFARAGLGVAIVPSMVAQN-----------VDPSLRVTPIAPPALHRTIAL-AHRTDVA 278

Query: 292 LKARDWKF 299
           L     +F
Sbjct: 279 LPRAAQEF 286


>gi|188534856|ref|YP_001908653.1| DNA-binding transcriptional activator GcvA [Erwinia tasmaniensis
           Et1/99]
 gi|188029898|emb|CAO97782.1| Glycine cleavage system transcriptional activator [Erwinia
           tasmaniensis Et1/99]
          Length = 305

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 130/299 (43%), Gaps = 25/299 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L+++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELYVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFTAINDATRKLQARSAK--GALTVSMLPSFAIQWLVPRLTSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++D +   D  D AI   R   P     L   KL   ++    +P  L      ++
Sbjct: 127 IQAVDRDEEKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLAGAFPLIA 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLG 238
             EL  H L     L      D+    +  R +G   I+ +Q     S    ++Q  + G
Sbjct: 183 PSELVHHTL-----LHDASRRDWQ---SYTRQLGLNTIN-VQHGPIFSHSAMVLQAAIHG 233

Query: 239 SGIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL    + +      R++    DV+      Y    ++    GK+ AFR ++  KA
Sbjct: 234 QGVALANSVMAQSEIEAGRLVCPFNDVLASKNAFYLVCHDSQAELGKIAAFRQWVLAKA 292


>gi|161523992|ref|YP_001579004.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351247|ref|YP_001946875.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341421|gb|ABX14507.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335269|dbj|BAG44339.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 309

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L + ++++S  +  LE  +G +L +R  R + LT  G+ 
Sbjct: 5   DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLEAALGTRLLHRTTRQVQLTADGTV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +      +       G+L +     + + ++   L      +P +Q+ 
Sbjct: 65  LLERGRRLLAEADELDRLFRRRDRDVIGRLNVDVPSRIARRVIAPALPALFRRHPKLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+    P     
Sbjct: 125 LGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFALINCASPDYLREHGVPEHPDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H     G   P    + +W    D   G   +   S + VN+  + +  C+ G G+ 
Sbjct: 184 L-AHGHWAIGYASPTTGRELDWEYVTD--AGRHTLTLPSRVVVNNAETYIASCIAGMGLI 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P + V    ++  LV +M         V   YP     + +L AF
Sbjct: 241 QIPRFDVAHLLESGALVEVMRAHRPAPMDVSAVYPHRRHRSRRLNAF 287


>gi|170734891|ref|YP_001774005.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820929|gb|ACA95510.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 306

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 135/294 (45%), Gaps = 17/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +  +GS T AA+   LS + +   +  LE+ +G  L +R  R   ++  G   +
Sbjct: 7   MAVFVRIVETGSLTAAAQAADLSPTMVGNYLQALESRLGAVLVHRTTRKQKVSAFGHAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   ++ T+        +P G+LR+   +      L   L ++   YP+I++ ++
Sbjct: 67  ERCVEILGLVDDTEQLALAHLKQPRGRLRVTAPVVFTTECLIPALADYYRRYPEIKLDIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+  +  + AIR+   + +  ++ R L    +   A+P Y+     P +   L 
Sbjct: 127 ATDSLADLFDEGFEAAIRIGT-LANPDVVARPLAPYRLVLCASPAYVHEHGAPATPHALG 185

Query: 188 KHNLITFGDLIPKCMEDFNWLA-----TVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
           +H+ +T+    P+      W A     T++ P G   +S    L++++  ++ +  + G 
Sbjct: 186 EHHCLTYA-YPPRS----EWHAAQTQWTLEGPDGPMSLSVDGRLKIDNADALRRAALRGL 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+LP  +++D+     LV IM D   P   +   Y +  + + KL++F  F+
Sbjct: 241 GIAMLPSILIRDDIREKRLVEIMPDFAGPERAMNLLYLQERQQSPKLRSFTEFV 294


>gi|293603041|ref|ZP_06685477.1| LysR family regulatory protein [Achromobacter piechaudii ATCC
           43553]
 gi|292818579|gb|EFF77624.1| LysR family regulatory protein [Achromobacter piechaudii ATCC
           43553]
          Length = 305

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 113/245 (46%), Gaps = 21/245 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V R  S T AAE LH++QS++SRQI  LE  +G+ L  R  R ++ T +G++
Sbjct: 12  DLVRGFVAVGRRMSITLAAEDLHVTQSAVSRQIRALEDHLGVPLLVRGFRSVSFTSEGAQ 71

Query: 66  LHRVTSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L R+      +L   T Q+   E        + + TTI +    L   L +F   +P I 
Sbjct: 72  LFRMADVWLSQLGDLTEQLRAPERRT----PVTVTTTIGVASLWLLPRLGDFQAAHPQID 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +++  DN+ IDI  +  D AIR       P  ++ L    ++ +   +  A         
Sbjct: 128 VRVAADNRLIDIDRESVDIAIRYSPADMVPDGAAWLFGESVMPVAHPSLQAGE------- 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
            L  +EL +H L+ F D     ++   WL    R +G  R    L+ N Y  I+   + G
Sbjct: 181 -LDERELQRHVLLEFDDPTRPWLQWSEWLTA--RGLGRTRAKGMLRFNQYDQIVLAALAG 237

Query: 239 SGIAL 243
            G+AL
Sbjct: 238 HGVAL 242


>gi|218507503|ref|ZP_03505381.1| transcriptional regulator, LysR family protein [Rhizobium etli
           Brasil 5]
          Length = 264

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 114/258 (44%), Gaps = 29/258 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG---- 63
           + +F  V  +GSF  AAE   +S + +++ I  +ET +G KL +R  R   LTE G    
Sbjct: 5   MAMFVRVIDNGSFAAAAEIAQVSPAMVAKHIKTIETRLGAKLIHRTTRRHQLTEVGQLYY 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R  SEV    E +  ELQ +   P G+LR+   +  G  +L   L ++   YPD+ 
Sbjct: 65  ERCKRALSEVALA-EASASELQSA---PRGRLRVVAPVSFGTQVLVPALIDYQNAYPDVS 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L LD+   D+  +  +  I +  P+   SL+ R L        AAP YL     P+S 
Sbjct: 121 IELSLDSNVHDLIGEGFELGIHI-GPLSDDSLVARPLTPYRRILAAAPDYLARHGRPVSP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGE----PRISCLQVNSYLSIMQY 234
           + L  H           C+    W    DR     P GE    P       N   ++   
Sbjct: 180 EALTNH----------LCLGHSYWRRQ-DRWHLVGPGGEMRDVPISGKFSTNQGAALRMA 228

Query: 235 CVLGSGIALLPDYIVKDN 252
            + G+GIAL P+ ++  +
Sbjct: 229 ALSGAGIALQPELLLAAD 246


>gi|53718051|ref|YP_107037.1| DNA-binding transcriptional activator GcvA [Burkholderia
           pseudomallei K96243]
 gi|53724941|ref|YP_101904.1| DNA-binding transcriptional activator GcvA [Burkholderia mallei
           ATCC 23344]
 gi|67642410|ref|ZP_00441167.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei GB8 horse 4]
 gi|76809715|ref|YP_332037.1| DNA-binding transcriptional activator GcvA [Burkholderia
           pseudomallei 1710b]
 gi|121599068|ref|YP_991572.1| DNA-binding transcriptional activator GcvA [Burkholderia mallei
           SAVP1]
 gi|124386583|ref|YP_001027355.1| DNA-binding transcriptional activator GcvA [Burkholderia mallei
           NCTC 10229]
 gi|126450378|ref|YP_001082706.1| DNA-binding transcriptional activator GcvA [Burkholderia mallei
           NCTC 10247]
 gi|167003219|ref|ZP_02269009.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei PRL-20]
 gi|167736883|ref|ZP_02409657.1| glycine cleavage system transcriptional activator [Burkholderia
           pseudomallei 14]
 gi|167813987|ref|ZP_02445667.1| glycine cleavage system transcriptional activator [Burkholderia
           pseudomallei 91]
 gi|167822508|ref|ZP_02453979.1| glycine cleavage system transcriptional activator [Burkholderia
           pseudomallei 9]
 gi|217419875|ref|ZP_03451381.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226193664|ref|ZP_03789267.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254176853|ref|ZP_04883510.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei ATCC 10399]
 gi|254187916|ref|ZP_04894428.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196784|ref|ZP_04903208.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254202017|ref|ZP_04908381.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei FMH]
 gi|254207349|ref|ZP_04913700.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei JHU]
 gi|254258246|ref|ZP_04949300.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254357607|ref|ZP_04973881.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei 2002721280]
 gi|52208465|emb|CAH34399.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|52428364|gb|AAU48957.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei ATCC 23344]
 gi|76579168|gb|ABA48643.1| glycine cleavage system transcriptional activator [Burkholderia
           pseudomallei 1710b]
 gi|121227878|gb|ABM50396.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei SAVP1]
 gi|124294603|gb|ABN03872.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei NCTC 10229]
 gi|126243248|gb|ABO06341.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei NCTC 10247]
 gi|147747911|gb|EDK54987.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei FMH]
 gi|147752891|gb|EDK59957.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei JHU]
 gi|148026671|gb|EDK84756.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei 2002721280]
 gi|157935596|gb|EDO91266.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160697894|gb|EDP87864.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei ATCC 10399]
 gi|169653527|gb|EDS86220.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|217397179|gb|EEC37195.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225934242|gb|EEH30226.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|238523559|gb|EEP86997.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei GB8 horse 4]
 gi|243061216|gb|EES43402.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei PRL-20]
 gi|254216935|gb|EET06319.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 321

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G +
Sbjct: 10  NALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGGR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S  +   +L ++T        +   +  F+  +P+I ++
Sbjct: 70  YAQQVRAALALLADATREVRAS--ERDKRLVVSTLPSFAARWITPRIGPFIERHPEIDLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 128 LRASDSLVDFARDDVDVAIRFGHGVYPGLHVE-PLLDETFFPVCAP-TLNGGMLPETPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 186 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 240

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++A R+++ 
Sbjct: 241 RSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRSWLL 289


>gi|330829338|ref|YP_004392290.1| LysR family transcriptional regulatory protein [Aeromonas veronii
           B565]
 gi|328804474|gb|AEB49673.1| LysR family transcriptional regulatory protein [Aeromonas veronii
           B565]
          Length = 311

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 121/250 (48%), Gaps = 6/250 (2%)

Query: 1   MSFDWDKLRVF-YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           +  D + L +F +VV R G FT AA  L + +S ISR+I  LE  +  +L  R +R L+L
Sbjct: 4   LELDLNDLYLFTHVVQRQG-FTAAARALGVPKSRISRRIRLLEERLDTRLLQRTSRQLSL 62

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G  L+R    +  + +  +  +++   +PSG +RI+  I +   LL   L  F+  Y
Sbjct: 63  TDAGEVLYRHCQAMLAEAQAGEAAVRQRQQEPSGLVRISVPITMADALLAPLLPAFMAQY 122

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P +++ +   N+ +D+  +  D  IR     Q+ SSL+Q  L T+     A P +L    
Sbjct: 123 PKVRLAVQASNRQVDLLEEGLDVVIRGVAFEQAPSSLVQVPLCTVQWGVLATPAWLSRHN 182

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
                ++L+  + + F  L  +   D  WL        E  ++  L+ ++  ++ Q  + 
Sbjct: 183 ALAHPRQLEGEDALLFSSL--ERQADLLWLRHDSGESEEVAVNVLLRSDNVQTLKQAALA 240

Query: 238 GSGIALLPDY 247
           G G+  LP Y
Sbjct: 241 GLGMVGLPLY 250


>gi|134279619|ref|ZP_01766331.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|237810645|ref|YP_002895096.1| glycine cleavage system transcriptional activator [Burkholderia
           pseudomallei MSHR346]
 gi|134248819|gb|EBA48901.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|237505935|gb|ACQ98253.1| glycine cleavage system transcriptional activator [Burkholderia
           pseudomallei MSHR346]
          Length = 321

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G +
Sbjct: 10  NALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGGR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S  +   +L ++T        +   +  F+  +P+I ++
Sbjct: 70  YAQQVRAALALLADATREVRAS--ERDKRLVVSTLPSFAARWITPRIGPFIERHPEIDLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D + D  D AIR    +     ++  L+        AP  L     P +  +
Sbjct: 128 LRASDSLVDFARDDVDVAIRFGHGVYPGLHVE-PLLDETFFPVCAP-TLNGGMLPETPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 186 LVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSS-NLLQAAIDGQGIALVR 240

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D+  PS +  +F  P +L  T +++A R+++ 
Sbjct: 241 RSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRSWLL 289


>gi|161523121|ref|YP_001586050.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348058|ref|YP_001941254.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160346674|gb|ABX19758.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189338196|dbj|BAG47264.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 324

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 124/295 (42%), Gaps = 15/295 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF   A  GS   AA    +S  + S  +  LE  +G++LF+R  R L+LTE+G +L   
Sbjct: 9   VFVRAATLGSLRAAAVDQGISPQAASHAVMQLEKALGVRLFHRTTRKLSLTEEGERLFDS 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  L +   + + S  + +G LR++    LG  +L    + F   YPD+Q+ +  D
Sbjct: 69  VKPALAMLASALGDARRSKSEVAGLLRVSAPRALGLPVLWPCFEAFEHAYPDVQLDVRFD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+  + AD   R   P  + S I R LV I +   A+P Y+     P +I EL  H
Sbjct: 129 DQFTDLVTERADVGFRGGPPPSAGS-IARPLVPIQLIVCASPAYIARHGAPRTIDELAAH 187

Query: 190 NLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
               +     G L        + +   D P      + L VN         + G G+  L
Sbjct: 188 RCTGYRRANTGKLAQWTFRVGDEIVYRDVP------AALTVNDTDMETHAVLSGLGVGQL 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +       +  LV ++ + +     +Y  Y    + + ++K F +F+  +  D
Sbjct: 242 GSFSAAMHLRSGRLVPLLTEHVVEHGMIYLYYGHRTERSLRVKTFIDFVVERLAD 296


>gi|54308605|ref|YP_129625.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913034|emb|CAG19823.1| Putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 300

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 126/273 (46%), Gaps = 8/273 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE   L+ S +S++I+ LE ++G++L YR  R LT++E G  
Sbjct: 5   DDLILFAQVVEQGSFSKVAELNSLTNSVVSKRIARLEADLGVQLLYRTTRKLTVSEAGKV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++    V          +       +G ++++     G  LL   + EF  ++P + + 
Sbjct: 65  LYQGAKNVKQAAVEAIDAVYGYGESVTGHVKMSVPTISGDLLLADAVAEFCSMHPGLTVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N  +D+  D  D  IR    ++ SSLI R ++       AAP Y+ +  +P++ ++
Sbjct: 125 MSLENLFVDLVEDGYDLVIRTGY-LEDSSLIARHILDSQWVICAAPAYIASVGKPMTPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   W    D      +++     ++  ++ +  + G G+A +
Sbjct: 184 LVTHNCLQYAYQTTGASE---WEFKGDSGNYIVKVAGNFSTDNAAALRKAALGGYGLAYV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           P  +V  +    +L+ +    +     +Y  YP
Sbjct: 241 PRCLVYQDFLKGDLIDVFPKRVGKKLGIYAVYP 273


>gi|269966574|ref|ZP_06180656.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269828837|gb|EEZ83089.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 308

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 139/301 (46%), Gaps = 20/301 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F   AR  SFT AA++L+++Q +ISRQI  LE  +G  +F R  R + LT  G +
Sbjct: 10  NSLVAFEASARHLSFTLAADELNVTQGAISRQIRQLEEYLGKAMFTRANRSINLTPTGLQ 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++  S+    L+  QI  +    +   K+ +ATT  +    L   + +F   + DI I+
Sbjct: 70  YYQAVSQSL--LDIAQITGEVKKWQGEQKITVATTNAMAALWLLPKVAQFQNEHDDIDIR 127

Query: 126 LILDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++  +  +D+     DC + L   R P   + +    L +  +    +P YL+   +P  
Sbjct: 128 ILASDNVLDLRR--LDCDLALFYCRTP--PAEMDVTTLFSEEVFPVCSPLYLEKIGQPSE 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +E+    L+   +     +    W A+V  P   PR + + +N+Y  ++Q  + G GIA
Sbjct: 184 PEEIFNKTLLYLEESQRDWVNWEQWFASVGLPNISPR-NRMNINNYPMLLQAAINGQGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTG----KLKAFRNFIFLKAR 295
           L    +V D   +  LVR +E V++         P   KN G     +K FR ++  +  
Sbjct: 243 LAWGSLVDDYLQSGALVRPVEHVLSTPSNFSMLEP---KNRGLIPASVKRFREWLLQQLP 299

Query: 296 D 296
           D
Sbjct: 300 D 300


>gi|288935388|ref|YP_003439447.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890097|gb|ADC58415.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 311

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 113/250 (45%), Gaps = 15/250 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  + +F+  A +  +S S +SR I  +E  +G +LFYR+ R +  TE G    
Sbjct: 12  LLIFIDVYETQNFSVVARREGISASQVSRVIHQMEDVLGQQLFYRNTRAIIPTESGHLFI 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   +E  + EL E +++PSG +RI   +  GQ  +   L      YP + I+L 
Sbjct: 72  RYARAMTGSMEEARRELNERTLEPSGMVRINAPVFFGQRHVAPALPGLTERYPKLSIELT 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  ID   + AD   R+   +  S+   R       H  A+P Y++      S +EL 
Sbjct: 132 LTDDYIDPHREPADVIFRI-GVLTDSAFHARVFGQQFYHLAASPDYIRRHGMLGSPEELA 190

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGSGI 241
           +H  + + G   P       WL    R  GE     P    +  N+  +++   + G GI
Sbjct: 191 RHKCLVYRGSSGPN-----QWLL---RRHGEEWVHYPVSPLMSSNNAETLLIAALGGMGI 242

Query: 242 ALLPDYIVKD 251
            L PD+++ D
Sbjct: 243 VLFPDWLIGD 252


>gi|262164436|ref|ZP_06032174.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|262026816|gb|EEY45483.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 312

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPAGALTVAAPEAFLNSVLQPFVMPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P+   +
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPIHPTD 189

Query: 186 LDKHNLITFGD 196
           L +H+ +   +
Sbjct: 190 LAEHDCLYLAE 200


>gi|317049321|ref|YP_004116969.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950938|gb|ADU70413.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 305

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 128/295 (43%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSALNDATRKLQARSAK--GALTVSLLPSFAIQWLVPRLSSFNTAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++D +   D  D AI   +      L   KL   ++    +P  L     PL    
Sbjct: 127 IQAVDRDEEKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSP-LLLTGDHPLK--- 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
               +L  F  L      D  W + + R +G   I+  Q    +    ++Q  + G G+A
Sbjct: 182 -SPADLAHFTLLHDASRRD--WQSYI-RQLGLQHINVQQGPIFSHSAMVLQAAIHGQGVA 237

Query: 243 LLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 238 LANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|148978268|ref|ZP_01814786.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145962569|gb|EDK27846.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 314

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 133/296 (44%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ + +   FT AA+ L++S S IS+Q++ LE  VGIKL  R  R LTLTE G   
Sbjct: 8   QMVIFHALIKHEGFTSAAKSLNVSVSHISKQVALLEDSVGIKLVQRTTRSLTLTEAGEVF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   ++++ ++  Q+++       SG LR+  +   G   +   + E   LYP ++I++
Sbjct: 68  YQHCEQLFNTVKAAQMDMDSQRDDISGILRVGLSQSFGTLHIIPAIDELRQLYPQLRIEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +    + QR L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMIEERLDLWITNNEDLPEGYIAQR-LADSQFVVAASPDYLIKAGTPHVPSDL 186

Query: 187 DKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLGSG 240
             HN      LI +  E D+   A  +   G+  +S      Y      ++    V G G
Sbjct: 187 IDHNC-----LIYRSRERDYTSWAFDN---GQENLSVKVAGDYSVDLAEAVRDAAVSGWG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV------YFCYPEALKNTGKLKAFRNFI 290
           +A L  Y+VK+     ++++  + P +        Y  YP       KL A   FI
Sbjct: 239 VAYLATYLVKEEFRTGKLIQ--VLPEWRASQLMPFYAVYPSRKNMPKKLSAVIEFI 292


>gi|116251020|ref|YP_766858.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255668|emb|CAK06749.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 299

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 10/179 (5%)

Query: 15  ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVY 74
           A  GSF+ AA +L L+ +++SR ++ LE  + ++LF R  R LTLTE G    R    + 
Sbjct: 4   AELGSFSSAARRLGLTPAAVSRNVAALEGNLKLRLFQRSTRSLTLTEAG---ERFLLSIR 60

Query: 75  HKLETTQIELQESS---VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK 131
             L++ Q  + E+S    +PSG L+++ +  LG   +   L EF+  YP I+ + + +N+
Sbjct: 61  DHLDSLQGAISEASNEQSEPSGVLKLSMSPTLGIGYILPLLPEFMRRYPMIRPEWMFENR 120

Query: 132 DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSIQELD 187
            +D+  +  D AI     + S  +I R L   H+   A+P Y+ +     +P  ++ELD
Sbjct: 121 QVDLIAEGYDAAIGGGFEL-SPGIIARPLAPAHIIPVASPGYIGDRVPPDDPSGLRELD 178


>gi|306840992|ref|ZP_07473732.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306288999|gb|EFM60267.1| LysR family transcriptional regulator [Brucella sp. BO2]
          Length = 287

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 123/275 (44%), Gaps = 11/275 (4%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79
            + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H     +   +E 
Sbjct: 1   MSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYHERVLAILANIEE 60

Query: 80  TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139
            +  +   S    G L+I+     G+  +   L  F+    D+ + + L ++ +DI  D 
Sbjct: 61  AEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQLSDEMVDIVGDG 120

Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIP 199
            D AIR+ + +  S+L+ R+L  +     AAP YLK    P +I++L  H  +   +  P
Sbjct: 121 YDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQDHICLAPHNNDP 179

Query: 200 KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLV 256
             +E       V RP G      LQ NS   + +  + G GIA    + V        LV
Sbjct: 180 WRLEGPKG-PIVIRPTGP-----LQTNSSEIVREAVLAGLGIAQRSTWDVGPELAAGKLV 233

Query: 257 RIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++ D   + +  ++  YP       K++ F +++
Sbjct: 234 QVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 268


>gi|307727819|ref|YP_003911032.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588344|gb|ADN61741.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 325

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 129/286 (45%), Gaps = 10/286 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF      GSF  AA +  LS +   + +S +ET++G +L  R  R L+LT+ G   +  
Sbjct: 9   VFVAAVDEGSFAAAARRFGLSAAMAGKYVSTIETQLGARLLQRSTRRLSLTDVGQTYYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +    +    E  ++     G LR+A  +  G   L   L  ++   P +++++ L 
Sbjct: 69  CKRILEAYDEASREASDAHGTARGVLRVAAPVTFGAMHLGDVLAGYMEQCPHVRVEVSLS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+     D A+R+ + +  S+L+ R+L    M   AAP YL+    P S ++L   
Sbjct: 129 DRYVDLVESGVDVAVRIGR-LPDSALVARRLAPCRMVVCAAPAYLERHGVPRSPEDLRNA 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             +TF + +   + D+    +  RP  I  P  S L  N+   ++   + G+GI   P +
Sbjct: 188 PRLTFSEAV--SVGDWTLFDSQQRPHVIDGP--SRLAANNTQMLLAAALAGAGIVYGPTF 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +      LV ++        T+   YP A     K++ F +++
Sbjct: 244 VFGEQIACGKLVELLPQYQASELTIQAVYPSARHLPLKVRHFLDYL 289


>gi|218660430|ref|ZP_03516360.1| transcriptional regulator protein, LysR family [Rhizobium etli
           IE4771]
          Length = 190

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 1/188 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + V   V   GS + A+  L    +++SR++S LE  +G KL  R  R +TLTE G 
Sbjct: 4   LDAMSVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLGAKLLQRSNRKITLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E+  ++E  +         P G+L +   I  G+  +   + +FL  YP+I +
Sbjct: 64  SYVEAAREILDRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPEINL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YL     P    
Sbjct: 124 RLMLGDRLSNLVEDHIDLALRI-GTLADSNLIATRLGAIRRTVYASPDYLARHLAPRQPG 182

Query: 185 ELDKHNLI 192
           +L  H+ I
Sbjct: 183 DLSAHDCI 190


>gi|146307158|ref|YP_001187623.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575359|gb|ABP84891.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 331

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 10/252 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE  +G  LF R    + +T  G  
Sbjct: 19  DQLELFLDVLETGSFSAAARRHPLTPSAVARRIDALERALGSSLFSRSTHAVRVTPAGLA 78

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL   P + +Q
Sbjct: 79  FAERARRILAELHLARAEAVSLSSAPEGLIRIDAPSPFGRRHLAPAIADFLRANPGLDVQ 138

Query: 126 LILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +   D+  ++    D  +R+  P+  S L+   L ++     A+P YL+    P S
Sbjct: 139 LRLIDSFTDLQGEHLGEVDIVVRI-GPLPDSRLVATPLASMTRIVCASPDYLRRRGIPRS 197

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSG 240
             EL++H+ + +  L P     + W   VD  +   +P+      N+  +++   + G G
Sbjct: 198 PLELEQHDGLDWDSLAPP----YAWRFEVDGKLQLCKPKRLRQTSNNAETLLFSALAGLG 253

Query: 241 IALLPDYIVKDN 252
           +A LP ++  ++
Sbjct: 254 VAHLPTWMSSEH 265


>gi|54303319|ref|YP_133312.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46916749|emb|CAG23512.1| Putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 297

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 132/297 (44%), Gaps = 27/297 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L +   V  SG F+ AAE L +  + +SR +S +E ++G+ +  R  R + LT
Sbjct: 5   MQTRSDDLEILLTVVDSGGFSAAAEALDIQVARVSRAVSKVEKQLGVSILNRTTRRVELT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +           ++  + EL      P G+LR+        + L   +K F  +YP
Sbjct: 65  DEGRQFVEAIRVGLLHIQQAEEELISRGELPKGRLRVDAASPFVFHQLVPLIKPFHEVYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  +   +D+     D AIR+ K +  S+L  R L    +   A+P YL     P
Sbjct: 125 DIKLELTSNEGFVDLLEKKTDVAIRIGK-LTDSTLHARPLGKSLLFIVASPEYLSRRGFP 183

Query: 181 LSIQELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               +L  H++I F     L    ++ F  L        EP  +    ++  ++ +  + 
Sbjct: 184 QYSSDLSSHDIIGFAGAKVLNSWPLKGFKAL--------EPTFTS---SNGETVRELALA 232

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+GIA L  ++VK +     I E  + P        PE L NT + +   N +F K+
Sbjct: 233 GNGIACLSGFMVKKD-----IEEGRLVP-----LLEPEKLSNTDREQI--NAVFYKS 277


>gi|298294193|ref|YP_003696132.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296930704|gb|ADH91513.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 298

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 117/250 (46%), Gaps = 8/250 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + V   V  +GS +  A +L    +++SR++  LE  +G++L  R +RGL LTE+G 
Sbjct: 4   FEAMSVLLTVVEAGSLSAGARRLRAPLATVSRKVGELEKHLGVRLVQRTSRGLVLTEEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  +  +L+  + +         G L +   I  G+  +     EFL  +P+I +
Sbjct: 64  TFVAASRRILEELDAAERQAAGDHGALRGGLHVTAPIAFGERHVLPIALEFLKEHPEIDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ + ++ ++ D A+R+   ++ S+LI  ++  +     A+P YL     P    
Sbjct: 124 RLTLADQQVRLADEHIDVALRIGH-LEDSALIATRVGAVRRVICASPAYLARRGIPRQPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L +H+ I+F            W    D P    EPR     VN+  + +Q  + G GI 
Sbjct: 183 DLAEHDGISFQGFATAP----EWRYRRDSPAFAVEPR-PKFAVNTTNAAIQAALAGVGII 237

Query: 243 LLPDYIVKDN 252
            +  Y V ++
Sbjct: 238 RVLSYQVSEH 247


>gi|206578977|ref|YP_002238412.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|290509438|ref|ZP_06548809.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206568035|gb|ACI09811.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|289778832|gb|EFD86829.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 311

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 113/250 (45%), Gaps = 15/250 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  + +F+  A +  +S S +SR I  +E  +G +LFYR+ R +  TE G    
Sbjct: 12  LLIFIDVYETQNFSVVARREGISASQVSRVIHQMEDVLGQQLFYRNTRAIIPTESGHLFI 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   +E  + EL E +++PSG +RI   +  GQ  +   L      YP + I+L 
Sbjct: 72  RYARAMTGSMEEARRELNERTLEPSGMVRINAPVFFGQRHVAPALPGLTERYPKLSIELT 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  ID   + AD   R+   +  S+   R       H  A+P Y++      S +EL 
Sbjct: 132 LTDDYIDPHREPADVIFRI-GVLTDSAFHARVFGQQFYHLAASPDYIRRHGMLGSPEELA 190

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGSGI 241
           +H  + + G   P       WL    R  GE     P    +  N+  +++   + G GI
Sbjct: 191 RHQCLVYRGSSGPN-----QWLL---RRHGEEWVHYPVSPLMSSNNAETLLIAALGGMGI 242

Query: 242 ALLPDYIVKD 251
            L PD+++ D
Sbjct: 243 VLFPDWLIGD 252


>gi|221066272|ref|ZP_03542377.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220711295|gb|EED66663.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 292

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 110/248 (44%), Gaps = 14/248 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V R G+F+ AA  L +  S I++++S LETE+  KLF R  R +T+TEQG KL+
Sbjct: 7   VQTFVAVVRYGNFSEAARHLGVVPSVIAKRVSQLETELNTKLFERTTRRVTVTEQGEKLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + V  + E     ++    KP G L++     L    L      FL   P I ++L 
Sbjct: 67  ARATNVVAEFEDLVRSVERDEGKPEGHLKVMAPTTLTMTELGQVFCGFLQKNPGITLELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++  + S    D AI  R       ++   L  +     A+P YL+   +    ++L 
Sbjct: 127 LEDRSTNPSEGGFDMAISGRA-ASYEGVVDVPLRPVKPLLCASPFYLRAHTQINHPRDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
               + F           NW    +R        PR   L  +   +++Q  V G G+AL
Sbjct: 186 DCACLVF------SATGRNWTFQSNRGTLSIDVHPR---LMADDNRTLLQAAVAGLGVAL 236

Query: 244 LPDYIVKD 251
           LP YI  +
Sbjct: 237 LPTYIASE 244


>gi|116250041|ref|YP_765879.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254689|emb|CAK05763.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 302

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 133/311 (42%), Gaps = 41/311 (13%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   V+   SF  AA++L ++ S+IS  IS LE  +G++L  R  R +  TE+G  L
Sbjct: 8   QLAVLAAVSEHRSFRAAAKELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGRLL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    +++     ++++  KP+G LRI         LL   L +FL LYPDI +++
Sbjct: 68  LERLRPALEEIDIALEAVRDTRAKPAGNLRITAPRFASDLLLAPRLGDFLNLYPDITLEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++   DI  +  D  IRL + +++  +  R    +     A+P Y ++  +P   ++L
Sbjct: 128 ANEDGFTDIVKEGFDAGIRLEESLEADMIAVRVSPDLTTVIAASPEYFEHHPKPEHPRDL 187

Query: 187 DKHNLI----TFGDLIPKCMEDFNW---------LATVDRP--IGEPR-----ISCLQVN 226
             H  I    T G +       + W         + +VD P  + E R            
Sbjct: 188 VHHRCIKRRFTNGSI-------YRWEFEKDGQELVVSVDGPLIVSEDRLALLAALNGAGL 240

Query: 227 SYLSIMQ-YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +YL  M+ Y  L  G              LVR++ED   P    +  YP   +    L+A
Sbjct: 241 AYLFDMRVYDELAGG-------------TLVRVLEDWCAPYSGPFLYYPTRRQMRPALRA 287

Query: 286 FRNFIFLKARD 296
           F +F     +D
Sbjct: 288 FIDFFRYSEQD 298


>gi|91224080|ref|ZP_01259343.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91190991|gb|EAS77257.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 300

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 131/289 (45%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +++F  +A + + + A ++L LS +  S  I+ LE  +G++L +R  R ++LTE+G  
Sbjct: 4   DHVKLFVRLASTHNISMAGQELGLSPAVASAHINKLEDSLGVRLVHRTTRKVSLTEEGQA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   +E  +  +      P+G LRI  +   G+  +   LK F+  YP + + 
Sbjct: 64  FLPHAEEVLATVEAARGAVGSGQSAPTGVLRITASATFGRLHIVPALKGFMARYPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               +  +D+     D AIR+ + ++ SSL+ RKL        A+P Y++    P   Q+
Sbjct: 124 CRFSDSIMDLVEGGFDVAIRVAE-LKDSSLVARKLAPDRRIIVASPDYIEQFGRPNKPQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  H  I    +        NW       +   R S   + ++  ++    V G GI++ 
Sbjct: 183 LTNHECINLVGM-------NNWSFNTKDGMFNVRTSGRFKTDNGDAMRDATVNGLGISIN 235

Query: 245 PDYIVK---DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNF 289
             + V     +  LV ++ED  +     ++  YP +     K++AF ++
Sbjct: 236 SVWSVYQELQSGQLVEVLEDHPLAMDAGIWAVYPSSRLIAPKVRAFIDY 284


>gi|326317816|ref|YP_004235488.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374652|gb|ADX46921.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 320

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 134/287 (46%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  +GSFT AAE+L ++++ +S+Q++ LE E    L  R  R +T T+ G   
Sbjct: 18  RMAYFAAVVETGSFTAAAERLGITKAVVSQQVARLEREFRTTLLTRTTRRVTPTDAGRAF 77

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H   + V  +      EL E   +PSG LR+   +D G   +   + EF   YP  ++  
Sbjct: 78  HARCALVLKEAHDAFDELGEGVTEPSGTLRLTAALDYGITTVVPAVTEFTRRYPQCRVDA 137

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL ++ +D+     + AIR+   +   ++  R++        AAP +          Q +
Sbjct: 138 ILSDQSLDVMSGQVELAIRVGW-LTDPAVQARQIGAFRQLLVAAPAWQGQVDALEDPQGV 196

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +   +    L       F+    ++R  G    + + +++ L++ +   LG+G+++LPD
Sbjct: 197 ARLPFVANTALREPTRWSFS-RGELERQ-GVSVHAVMSMDATLAVREAVRLGAGLSVLPD 254

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y V ++     LV ++     PS  ++  +P A     K++AF + +
Sbjct: 255 YAVAEDLAAGRLVHVLPQWSLPSGGIHAVFPPARFRPAKVRAFVDLL 301


>gi|261212581|ref|ZP_05926866.1| transcriptional regulator LysR family [Vibrio sp. RC341]
 gi|260838512|gb|EEX65168.1| transcriptional regulator LysR family [Vibrio sp. RC341]
          Length = 293

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 119/258 (46%), Gaps = 21/258 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L +   V  +G FT AAE L +  + +SR +S +E+++G+ +  R  R + LT
Sbjct: 1   MRTKSDDLEILLTVVDTGGFTAAAESLDIQVARVSRAVSKVESQLGVTILNRTTRRIELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +          +L+  + E+      P G+LR+        + L   ++ F   YP
Sbjct: 61  DEGRQFVESVRIGLMQLQQAEDEIISRGELPKGRLRVDAASPFVFHQLVPLVQPFNQAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  +   +D+     D AIR+   +  S+L  R L    ++  A+P YL     P
Sbjct: 121 DIELELTSNEGFVDLLEKKTDIAIRI-GALNDSTLHARPLGRSLLYIVASPDYLSKRGFP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMED-----FNWLA-TVDRPIGEPRISCLQVNSYLSIMQY 234
               +L+ H+ I F    PK + +     F+ L  T+    GE            ++ Q 
Sbjct: 180 SKSSDLEHHDTIGFS--TPKTLNEWPLKGFSGLTPTLTSSNGE------------TVRQL 225

Query: 235 CVLGSGIALLPDYIVKDN 252
            ++G+GIA L  ++VK +
Sbjct: 226 ALMGNGIACLSGFMVKKD 243


>gi|258623412|ref|ZP_05718415.1| HTH-type transcriptional regulator [Vibrio mimicus VM573]
 gi|258584227|gb|EEW08973.1| HTH-type transcriptional regulator [Vibrio mimicus VM573]
          Length = 302

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 129/305 (42%), Gaps = 24/305 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +  R F  V   GSFT AA  L L+Q  IS+ +S LE +VG KL +R  R + +T
Sbjct: 1   MELDLNAARCFVKVVELGSFTQAANLLGLTQPGISKAVSRLEAQVGAKLIHRSTRQVRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    + +  E    EL+ S   P G L+++    L  +L+   +K     YP
Sbjct: 61  EDGQLFMKRIQPLIYGFEEAHNELKFSKTTPVGCLKLSAPSALSHSLMMPIVKLLTERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L L ++ + +  +  D  +R    I    L+   L        A+P YL     P
Sbjct: 121 GLRIELSLTDQKVHVFDEGYDAVLRF-GSIDDERLVAFALQDAEWVTVASPEYLAKQGIP 179

Query: 181 LSIQELDKHNLI-----TFGDLIP-------KCMEDFNWLATVDRPIGEPRI-SCLQVNS 227
               EL   N +     +  + +P       K +E    +  V    G+P I + LQ   
Sbjct: 180 HHPDELRNFNCLHVKARSQTNTLPWRFRIDGKGIEYRQLVGNVCFDHGDPLIDAALQGLG 239

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            + +++ CV+   +A         N  L  I+ D    + + +  YP + + + KL   R
Sbjct: 240 AVQVLR-CVVTDKLA---------NGELKEILTDFRPQAHSFHLLYPPSRQRSAKLTVLR 289

Query: 288 NFIFL 292
             + L
Sbjct: 290 EALIL 294


>gi|206971377|ref|ZP_03232327.1| transcriptional regulator, LysR family [Bacillus cereus AH1134]
 gi|206733362|gb|EDZ50534.1| transcriptional regulator, LysR family [Bacillus cereus AH1134]
          Length = 300

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 146/314 (46%), Gaps = 41/314 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLRNELDIGITFL-PVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    + FN+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTV--------YFC-----YP 274
           +Q    G GI +LP    D++   N   ++I     TP+  +        Y C     + 
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIYRKDKYMCAATREFI 288

Query: 275 EALKNTGKLKAFRN 288
           E LK+T  +++F+N
Sbjct: 289 EQLKST--VRSFQN 300


>gi|34498394|ref|NP_902609.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34104248|gb|AAQ60607.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 301

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 114/243 (46%), Gaps = 7/243 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA+ GSFT A ++L +S+  ++R +  LE  +G++L  R  R +TLT+ G    
Sbjct: 7   MQVFAEVAQLGSFTAAGDKLDMSRPMVTRYVEELEQWLGVRLLQRSTRKVTLTDAGLACL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +  + +  +   +  G LR+A +   G  +L G + EF   +P +++ L 
Sbjct: 67  ARCRQMLDLADEVRADASQRDGQVRGLLRVAASTSFGLAVLGGAVAEFGERHPQLRVDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D AIR+        L+ R+L        AAP YL     P    +L+
Sbjct: 127 LGDRAVNLIEERIDLAIRITNE-PDPGLVGRRLCDCRSLLVAAPSYLARHGTPKEPVDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            H  +++ +          W         + R++  +  N   +++   + G+G++L P 
Sbjct: 186 SHRCLSYSNF-----GRSEWRLRKGEEESKVRVAGNISANEASALLSATLAGAGVSLQPS 240

Query: 247 YIV 249
           Y+ 
Sbjct: 241 YLA 243


>gi|170696142|ref|ZP_02887277.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138957|gb|EDT07150.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 330

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 4/192 (2%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKLR   VF  +   GSFT A+E+L +S  ++SR ++ LE  +G +L  R  R +  T+ 
Sbjct: 26  DKLREMEVFVAIVDRGSFTSASEKLGMSTPAVSRALNSLEARLGTQLLARTTRTIRPTDA 85

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        +V   +      +    + P G L ++  +  GQ  +   +  F L YP++
Sbjct: 86  GLGYLDACRKVLDAITEADANVAADHLNPVGTLTVSAPVMFGQRFIAPLINAFALRYPEV 145

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  I  ++   +  +  D A+R+   +  SS+    L  +    YAAP YL    EP  
Sbjct: 146 TVNAIYVDRTTRLLEEGVDIAVRIGH-LGDSSIFAIPLGFVRRRTYAAPAYLAAHGEPRH 204

Query: 183 IQELDKHNLITF 194
            ++L  H  ++F
Sbjct: 205 PKDLADHQCVSF 216


>gi|167626950|ref|YP_001677450.1| LysR family transcriptional regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167596951|gb|ABZ86949.1| transcriptional regulator, LysR family [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 300

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 132/285 (46%), Gaps = 15/285 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
             +FY +   GSFT+ A  L +++++IS  I  LE E+ + L  R  R L+LT +G  L 
Sbjct: 14  FEIFYKLVTYGSFTNTANALGITKAAISHSIKQLEKELKVDLLIRTTRRLSLTHEGKLLF 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + +++E  +   +    +PSG L+I T+    +++L G +KEF   +  ++I++ 
Sbjct: 74  EYCKTLQNEIENIRDLAESFHSEPSGTLKINTSSFFAKSVLIGLIKEFSKRFSKVKIEVN 133

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +  +      D  + +   P     +I RK+ T      A P YL++   P ++ +L
Sbjct: 134 IEERMPNFKTQETDIILGVNWTP--PEDIIARKIATTRYILCATPVYLQHNGIPSNLYDL 191

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGS-GIALL 244
             H  I               L  + +    P+    ++++  +  ++ CVL   GIA  
Sbjct: 192 ANHKYIPHKSRT-------TALVNIKKNNLNPQTLPFELSANNIEFIKECVLNDLGIAQF 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +YIVKD   N  LV +++D       +Y  YP+      K+K F
Sbjct: 245 HEYIVKDEIQNGKLVELLKDEFLDQQDIYIYYPKNKFVQPKVKEF 289


>gi|116252967|ref|YP_768805.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257615|emb|CAK08712.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 316

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 2/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V  +GSF+ AA  L ++Q ++SRQ++ LE     +L +R   GL+LT +G ++ 
Sbjct: 16  LRTFQRVVETGSFSAAAHDLDVTQPAVSRQVAALEGHFNTRLLHRTTSGLSLTAEGERML 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   +   +E             SGK+R++    LG  L +  L + L  +P + ++LI
Sbjct: 76  PMALRILEAVEELGDAAGSDGAMASGKVRLSVPAPLGLYLSE-RLGDLLAAHPKLAVELI 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +  D+  +  D  +RL + +  SSL+ R++        A+P YL     P + +E+ 
Sbjct: 135 FREQSSDMIEERLDLEVRLGQ-VADSSLVCRRIGWTTAFLIASPAYLARRAAPRAPKEIK 193

Query: 188 KHNLITF 194
            H  + +
Sbjct: 194 DHECLCY 200


>gi|148253680|ref|YP_001238265.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405853|gb|ABQ34359.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. BTAi1]
          Length = 301

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 146/298 (48%), Gaps = 15/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +  + + VF+ V  +G  T A+  L + +SS+S+ ++ LE ++GI+LF R++R + +T
Sbjct: 1   MKWRIEDIPVFHAVVATGGMTGASRSLGMPKSSVSKSVARLEQDLGIRLFDRNSRRVRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    +   ++  ++      +      PSG+L +A      + +L   L EF   YP
Sbjct: 61  REGELFFQQCQKILDQVSEADAVMTGLVDVPSGRLSVALPPAFCEEILAPKLAEFHHRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ +    + ID+  D  D A+ +    + S L Q+ L+   +    +P YL      
Sbjct: 121 RIELDVEATTRAIDMLADRFDIAVVVGVQ-EDSELAQKVLIGGRLIWVTSPAYLAAHDIG 179

Query: 181 LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             I+ L+ H +I    +GD     ++    L   D  +G P ++  ++N+ L++ +    
Sbjct: 180 DDIRALEAHLMICERRYGDRT-LTIKQHGHLVRFD--VG-PHVA--RINNPLAVRRAVAH 233

Query: 238 GSGIALLPD-YIVK--DNPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+G++ LP+ Y V+  D   LV I ++V+  T +  +   +P     + + +AF +F+
Sbjct: 234 GAGVSFLPEHYCVELLDEGRLVEIGKEVVFDTRAAQLTAIFPSRKLISSRARAFLDFL 291


>gi|83719834|ref|YP_440834.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|257140511|ref|ZP_05588773.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83653659|gb|ABC37722.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 571

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 95/196 (48%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V    SF  AA QL +S ++++R I  LE  + ++L  R  R L+LTE G +  
Sbjct: 7   MRVFTRVVDLASFNLAARQLGMSAAAVTRSIGMLEAHLNMRLLNRTTRSLSLTEAGREYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  KL+  +  L +++  P G LRIA+++    + L   L  + +L+P +   + 
Sbjct: 67  DGCRAIIDKLDEIESNLVQATRDPRGTLRIASSMSFAASGLGPLLAAYRILHPRVAFDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+     D      + + SS+L+ R L TI     A+P YL     P +  EL 
Sbjct: 127 TFDTHVDMVEGAYDVCFSDDRHLASSTLVSRALTTIREVTVASPAYLARHGTPHNPAELG 186

Query: 188 KHNLITFGDLIPKCME 203
           +H+L+   D   +  E
Sbjct: 187 EHSLLAISDGTARSWE 202


>gi|77163865|ref|YP_342390.1| LysR family transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|254436200|ref|ZP_05049707.1| LysR substrate binding domain protein [Nitrosococcus oceani AFC27]
 gi|76882179|gb|ABA56860.1| transcriptional regulator, LysR family [Nitrosococcus oceani ATCC
           19707]
 gi|207089311|gb|EDZ66583.1| LysR substrate binding domain protein [Nitrosococcus oceani AFC27]
          Length = 301

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +L VF  VAR  S+T AAE+LHLSQ ++S QI  LE  VG+ LF +  + + LT
Sbjct: 1   MHVTLRQLHVFEAVARHLSYTRAAEELHLSQPAVSMQIKQLEGNVGLALFEQLGKKIFLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L+  + ++  +L   +  L+E      G L IA         L   L  F   +P
Sbjct: 61  EAGRELYHYSQQISRELSEAEDVLEELKGSRRGTLTIAVASTATYFALH-LLGRFHQRFP 119

Query: 121 DIQIQLILDNKDI---DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP-HYLKN 176
           +  I L + N+      +  +  D AI + KP +   ++ +  +   +   A P H L  
Sbjct: 120 EANISLDVTNRKSLLRHLEENTIDMAI-MGKPPEGLEVVAKPFMENPLVVIAPPAHPLAG 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            R PL++   +   L   G      ME F         +G    S ++++S  +I Q   
Sbjct: 179 QRVPLTVLRQETFILREHGSGTRIAMERFFA------RLGATITSSMEISSNEAIKQAVQ 232

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFL 292
            G G+ ++  + ++    L R++  +   SF +    Y  Y +  + T   KAF+  +F 
Sbjct: 233 AGFGLGIVSQHTLEKELALRRLV-ILEVDSFPIMRHWYIVYRKNKRATALHKAFKKLVFE 291

Query: 293 KARD 296
           +AR+
Sbjct: 292 EARE 295


>gi|330820616|ref|YP_004349478.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327372611|gb|AEA63966.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 301

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 135/293 (46%), Gaps = 15/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F  +  +GSF+ +A+ L + ++S +  I  LE  +G +L  R  R +  T  GS 
Sbjct: 5   DTLQLFTRIVETGSFSRSADMLGIPRASATHAIKQLEARLGTRLLERTTRQVRPTPDGSA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  +L+  +  L++ +  P G LR+         ++   + +F   YP+I++ 
Sbjct: 65  FYERCVLVLTELDDAEASLRQVASNPRGVLRVDMHGTHATTIVIPRIDDFHRRYPEIELV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC +R  +P   SSL+ R+L  +     A+P YL     P    E
Sbjct: 125 VSSGDRLVDLVREGVDCVVRGGRP-HDSSLVARRLAMMPQVICASPAYLAEFGMPKHPDE 183

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           L  H  + F    G++      D+ +   VD  + +  I   + VN   + +     G G
Sbjct: 184 LPGHRAVRFFSSNGNI------DYPFSLVVDGEVRDYDIGGWISVNDAENYVVAAERGCG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +P + ++    +  LV ++ +  +P   +   YP   + + +++ F +++
Sbjct: 238 LIQVPRFHLEGALRDGRLVEVLPEWRSPDLPLTALYPYRRQLSPRVRVFVDWL 290


>gi|295689918|ref|YP_003593611.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295431821|gb|ADG10993.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 298

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 126/278 (45%), Gaps = 13/278 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR G F  AA +    ++++SR++S LE  + ++LF R  R L LTE+G  L   T
Sbjct: 9   FNLVARHGGFGRAARETGRPKATLSRRVSELEASLDLRLFERGGRTLKLTEEGRALFART 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L+     +      P G+LRI+  +   Q  +     EF L +P++++++  D+
Sbjct: 69  GALLAELDEAAAAIASGGGTPRGRLRISAPLLFSQTAMGRLAAEFALAFPEVRLEVTTDD 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D  IR+  P   + LI R  +   +   A+P  L   ++  SI+      
Sbjct: 129 RAVDMVEEGYDLVIRV-NPNPDAGLIGRIFLRDRLVVVASPD-LARPKDSSSIRA----- 181

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            +  G        D   L    R   EP    L+++S + +        GIA LP  +V 
Sbjct: 182 -VVRGAGADAETWDVTTLNGPSRIAVEP---VLRLSSLIMVRDAVRASVGIARLPISLVS 237

Query: 251 DNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286
            + +  R++   DV      ++  YP     + ++ AF
Sbjct: 238 HDLDAGRLVSWGDVAGSEIALWALYPSRRLLSARVSAF 275


>gi|308187962|ref|YP_003932093.1| HTH-type transcriptional activator ampR [Pantoea vagans C9-1]
 gi|308058472|gb|ADO10644.1| HTH-type transcriptional activator ampR [Pantoea vagans C9-1]
          Length = 305

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F + YP I ++
Sbjct: 69  YYLDIKEIFSAINEATRKLQARSAK--GALTVSLLPSFAIQWLVPRLSSFNMAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++D +   D  D AI   R   P     L   KL   ++    +P  L     PL 
Sbjct: 127 IQAVDRDEEKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPS-LMTGDNPLK 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
              +D        D   +     +W + + R +G   I+  Q    +    ++Q  + G 
Sbjct: 182 T-PMDLSRFTLLHDASRR-----DWQSYI-RQLGLQHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +      R++    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 235 GVALANNVMAQSEIEAGRLICPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILEKA 292


>gi|270264835|ref|ZP_06193099.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041133|gb|EFA14233.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 305

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSSINEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ +   D  D AI   +        +R L   ++    +P  L          +
Sbjct: 127 IQAVDREEEKLADDVDVAIFYGRGNWPGVRAER-LYAEYLLPVCSPSLLTGEHALKVTDD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
           L  H L+             +WLA   R +G   I+  Q    +    ++Q  V G G+A
Sbjct: 186 LAYHTLL-------HDTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHGQGVA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+ + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 238 LVNNVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|260888708|ref|ZP_05899971.1| transcriptional regulator, LysR family [Selenomonas sputigena ATCC
           35185]
 gi|330839890|ref|YP_004414470.1| transcriptional regulator, LysR family [Selenomonas sputigena ATCC
           35185]
 gi|260861577|gb|EEX76077.1| transcriptional regulator, LysR family [Selenomonas sputigena ATCC
           35185]
 gi|329747654|gb|AEC01011.1| transcriptional regulator, LysR family [Selenomonas sputigena ATCC
           35185]
          Length = 291

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 10/145 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   +R FY +   G+ +HAA +L ++Q ++SRQ+  LE+ +G+KLF R +R + LTE 
Sbjct: 1   MDIKDMRAFYAIVEEGNISHAAGRLAVAQPALSRQMKRLESALGVKLFERGSRRIRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++   ++ T  E+Q+     +G++RI T    G NL+ G L  F   +P +
Sbjct: 61  GRVLKERVEQILGLVDGTVREIQDVGEGTAGEVRIGTITSSGANLVPGLLAAFHKTHPRV 120

Query: 123 QIQL----------ILDNKDIDISM 137
             Q+          +LDN+ I+I++
Sbjct: 121 TFQIFEAEGARVLDMLDNRLIEIAV 145


>gi|187918819|ref|YP_001887850.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717257|gb|ACD18480.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 308

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 3/185 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L VF   A + SFT A  QL +S S++ + IS LE  +G++LF+R  R + LT +G+
Sbjct: 4   FGSLNVFVRAAETRSFTEAGRQLGISSSAVGKAISRLEGRLGVRLFHRSTRSIALTPEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  ++E  + EL  ++  P G LR+  ++ +   L+   +  F+  YPDI +
Sbjct: 64  TFLTRCQRIIGEIEAAENELALANAAPRGLLRV--SMPMVSTLMMPVIAAFMKTYPDIVL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  D   R    I  S+L+ R + T       +P Y      P   +
Sbjct: 122 DIDFSDRMVDVIEEGFDVVTRTGDAID-STLVTRTMGTYRHVIVGSPAYFAQRGVPSEPE 180

Query: 185 ELDKH 189
           +L +H
Sbjct: 181 QLREH 185


>gi|306841813|ref|ZP_07474496.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306288094|gb|EFM59488.1| LysR family transcriptional regulator [Brucella sp. BO2]
          Length = 310

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 127/300 (42%), Gaps = 24/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VAR  SF+ AA++L L+Q ++SRQI+ LE ++G  LF R +R + L+E G  
Sbjct: 13  SALAAFDAVARHESFSAAADELSLTQGAVSRQIASLEEQLGAALFDRTSRNVVLSEPGRV 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        +      LQ  S      L +A     G   L   +  F+  YP I + 
Sbjct: 73  YLQAIGPALASIRAA--SLQVMSQMRGTTLNLAFLPTFGTRWLIPRIPRFVAQYPHIILN 130

Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKN--CRE 179
                   D   +  D AI + +P     + + L+   +  +      +P +LK+     
Sbjct: 131 FATRIGQFDFDREGLDAAIHIGQPDWPNAECTFLMDETVAPV-----CSPAFLKDHPVTS 185

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  +  L   N+ +     P   E  +W   +   I  P    ++   + ++ Q CV G 
Sbjct: 186 PHDLLRLPLFNMAS----RPGAWE--HWFRNLG--ITTPVPGGMRFEQFSNVSQACVAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L+P ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 238 GMGLMPLFLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEIRN 297


>gi|77458645|ref|YP_348151.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382648|gb|ABA74161.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 334

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 126/293 (43%), Gaps = 12/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +R F  VA+SGSFT AAE    + +++S+ IS LE  +  +L  R  R L LTE G 
Sbjct: 27  FQSMRFFIAVAQSGSFTAAAEMPDTNTTNVSKAISALEARLHTRLINRTTRRLALTEAGV 86

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      ++   +     E   +   P G+L+I T   +G + +   +  +  ++P +  
Sbjct: 87  RYLERCEKILDDVREADEEAGTAQTLPVGRLKIHTMSAIGNHYVIDAIARYRDIHPTVMF 146

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L N+  D+  +  D +I L + +  S  + ++L   +    A+P Y+     P +  
Sbjct: 147 DLTLTNRVPDLLEEGFDMSIVLARDLPDSGFVAQRLGITYSILCASPAYVAKRGLPQTPG 206

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVLGSG 240
           EL +H  +    ++   M   NW  T + P G   IS       +N+   +      G G
Sbjct: 207 ELCEHECLR---IVNTVMPVENW--TFEGPEGMETISIPVSPFHINTADGMTIAIRKGMG 261

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I + P     D      LVR++ +       ++  YP       K+K +  F+
Sbjct: 262 IGIQPIASAVDGLRAGTLVRVLPEYRLEELNLFAIYPSRKFVDAKIKTWVEFL 314


>gi|313500148|gb|ADR61514.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 309

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 132/296 (44%), Gaps = 14/296 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V  +GS    A  L LS +++S+ ++ LE  + ++L  R  R + LT  G++
Sbjct: 5   NAIRCFIKVVEAGSIAAGARILGLSPAAVSQNLARLEGHLQVRLLSRTTRSMALTPSGAQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   L   +  +     +P G+L IA+T   G+++L   +  F   YP + I+
Sbjct: 65  YYERVKHVERDLALAEQAVTTPDSEPQGRLCIASTSAFGRHVLAPLIPAFSARYPLLSIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+  ++ ++ + +  D ++R+  P     L+ R++  I     A+P YL++   P + + 
Sbjct: 125 LVTTDRRVNHAREDVDVSLRI-APQLEDQLLARRIARIPFICCASPGYLQSAGVPATPEA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALL 244
           L  H  + F    P       W    D    E     + ++  + ++ Q  +   GI  L
Sbjct: 184 LRGHRCLVF--RYPVDGRFLRWGFMRDGLRFEAEFGSVLISDDIDALTQMALHDGGITRL 241

Query: 245 PDYIVKD---NPNLVRIME-------DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++IV+    +  LV + E          T    +Y C  +    T K++AF +++
Sbjct: 242 AEFIVRPHLASGALVPLFEYCDSSQAYAQTEPMDIYLCLADRFAMTTKVRAFMDYL 297


>gi|300693924|ref|YP_003749897.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299075961|emb|CBJ35272.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 308

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 122/272 (44%), Gaps = 7/272 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA QL +S+S++S  + GLE  +G++L  R  R ++ TE G++
Sbjct: 7   NDLQAFVAVARERSFTRAAAQLGVSRSALSHAMLGLEARLGVRLLTRTTRSVSTTEAGAR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    ++ET    L     KP+G +RI         +L   L+  L  YPDI ++
Sbjct: 67  LLNTLAPRLDEIETELASLSSLRDKPAGTVRITAHDHAITTVLWPRLRTLLHAYPDINVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D    DI+    D  +R    +    +  R    + M    +P Y      P + ++
Sbjct: 127 LSVDYAFTDIAAARLDAGVRSGDRVDKDMIAVRIGPDMRMAVAGSPDYFATHDTPATPRD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L +H  I     +P     + W    +      R+    + N+   ++Q  + G G+A +
Sbjct: 187 LTEHRCINL--RLPTHGGLYAWEFEKNGEALNVRVDGQTIFNNTFLMLQAALDGMGLAYV 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           P  +++ +     LV ++ D   P F  Y  Y
Sbjct: 245 PFDLLEPHIAAGRLVPVLHD-WWPQFPGYHLY 275


>gi|221199292|ref|ZP_03572336.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
 gi|221205806|ref|ZP_03578821.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221174644|gb|EEE07076.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221180577|gb|EEE12980.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
          Length = 309

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 124/287 (43%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L + ++++S  +  LE  +G +L +R  R + LT  G+ 
Sbjct: 5   DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLEAALGTRLLHRTTRQVQLTADGTV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +      +       G+L +     + + ++   L      +P +Q+ 
Sbjct: 65  LLERGRRLLAEADELDRLFRRRDRDVIGRLNVDVPSRIARRVIAPALPALFRRHPKLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+    P     
Sbjct: 125 LGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFALINCASPDYLREHGVPEHPDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L  H     G   P    + +W    D   G   +   S + VN+  + +  C+ G G+ 
Sbjct: 184 L-AHGHWAIGYASPTTGREVDWEYGTD--AGRHTLTLPSRVVVNNAETYIASCIAGMGLI 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P + V    ++ +LV +M         V   YP     + +L AF
Sbjct: 241 QIPRFDVAHLLESGSLVEVMRAHRPAPMDVSAVYPHRRHRSRRLNAF 287


>gi|167561621|ref|ZP_02354537.1| putative LysR family transcriptional regulator [Burkholderia
           oklahomensis EO147]
 gi|167568857|ref|ZP_02361731.1| putative LysR family transcriptional regulator [Burkholderia
           oklahomensis C6786]
          Length = 310

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 3/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKVSTRLFERSTRRLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     SGK+R+++T D G+N L   L EF   YPD+   + 
Sbjct: 67  NCCRQALQALDDADAMLQEGRNIVSGKVRLSSTSDFGRNQLLDWLDEFNARYPDVTFAVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R+L        A+P ++     P    +L 
Sbjct: 127 ASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCASPAFVDKHGAPKDPLDLA 185

Query: 188 KH--NLIT 193
           +   N+IT
Sbjct: 186 RFPCNVIT 193


>gi|332529241|ref|ZP_08405205.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332041464|gb|EGI77826.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 309

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 10/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   LR+   VA  G    AA +  L  ++ +  I  LE ++G +LF R +R L  T +
Sbjct: 15  LDLGALRLALRVAELGGVAAAAREQGLLNATATAAIRRLEQQLGARLFMRSSRALRPTPE 74

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +        ++    EL+    +  G LR+    DLG  +L+  L EF+ L+P +
Sbjct: 75  GEAFLQRCLAALSAVDEAAAELRAPLTQVRGLLRLGVPTDLGTQVLRPLLDEFMGLHPQL 134

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPL 181
           Q+ L + ++  D++ +  D AIR      +   I R LV   H    AAP YL+    P 
Sbjct: 135 QLDLAIGDRVADLAREPVDAAIRYGD--AAPGQIARPLVPDNHAILVAAPTYLRRAGTPK 192

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + +L  H +I    L         W L    +P+          +S L   Q+ V G G
Sbjct: 193 RLDDLAAHEMI---GLRIASRPAHRWALLDSGKPVTLKARVRRSADSGLVARQWAVAGCG 249

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IAL     V  +    +L+ ++  V +  + +          + +++A  +F+
Sbjct: 250 IALKSRLDVAADLAAGHLIHVLPQVHSQPYPLVLALARGTHLSARMRALGDFL 302


>gi|254294578|ref|YP_003060601.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254043109|gb|ACT59904.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 295

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 126/298 (42%), Gaps = 10/298 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW  L+ F  V   GSF+ AA   + SQ+++SR I+ LE ++  +LF R   G+ LT 
Sbjct: 3   NIDWSLLQSFVNVCEYGSFSAAARATNGSQATLSRHITMLEQQLETRLFDRLVSGVELTT 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  + R  S +        +  +      SG +R+         +L   + E  +  P 
Sbjct: 63  KGIDVLRHASNMADAAGQLSMATEGEDQAISGTVRVTAATMTATYILPEIISELRIEEPM 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L+  N+  ++    AD AIR+  P Q  +L  RKL  +    Y A  YL     P 
Sbjct: 123 IDIELVASNRTENLVRREADIAIRMATPTQ-ENLFARKLGDMEFGLYGAKEYLNRHPAPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLG 238
           + ++L  HN++ F        +D   L T  +  G   +      + + ++   +  V G
Sbjct: 182 TGEDLLSHNVVGFD------TKDIALLITAMKKHGIDVDREFFTFRSDDHVVCWKMVVAG 235

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            G+ ++   I    P + RI          ++      LK   +++   +F+  K  D
Sbjct: 236 YGLGIIQRKIGDAEPLVSRIDLPNTMARLPIWLIAHSELKTNLRVRRVFDFLAKKITD 293


>gi|170690868|ref|ZP_02882034.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170144117|gb|EDT12279.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 289

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 129/286 (45%), Gaps = 15/286 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+ +R+F  VARSGSF  +A  L +S  ++ R+I  LE E    LF R   GL LT+ 
Sbjct: 1   MEWNDVRIFLAVARSGSFGESARMLDVSHPTVGRRIKVLEDEAKQPLFRRTKDGLVLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +  +   +     + +  L  ++ +  G LRI++       +L   L E    +P +
Sbjct: 61  GDTVLALAESMEDAALSMERRLSGNNQRLEGILRISSADWFAGYVLAPVLAELTRRHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-EPL 181
             ++I   + +D+S   AD A R+  P     ++QR+L  I    YA+    +  + +P 
Sbjct: 121 VPEVIASYRLLDLSRREADVAFRI-VPFSEPDIVQRRLTRIQYGLYASAATAQALQDDPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSG 240
           S+        +   +       D +W+  ++R P+   R +    N  +   Q C+ G G
Sbjct: 180 SVG-------LILMNTAQSHFPDVSWV--LERFPLS--RRAFTSTNRTVQ-AQMCLRGVG 227

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA+LP  +      L RI      P   ++  Y + L++  +L+A 
Sbjct: 228 IAVLPRPLGDAISGLHRIDTPDQPPMRDLWVGYHQDLRHMDRLRAM 273


>gi|167899483|ref|ZP_02486884.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167923994|ref|ZP_02511085.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
          Length = 301

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 15/290 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  +  LE E+G  L  R  R L +TE G
Sbjct: 8   NLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEIGASLVVRTTRRLNVTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    ET    +   +    G LR++  +D G  ++   L      +P ++
Sbjct: 68  RAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPALE 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P S 
Sbjct: 128 IELQCDDRVVDLVRDNLDVAIRLGR-LADSNHRAAKLGGFERWLVASPAFVARHGAPASP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQV---NSYLSIMQYCVLGS 239
           + L     +    +    +E  N         GE   + C +    N+  +     + G 
Sbjct: 187 EALGALPYVMLSTVPRTTLELANAH-------GERASVRCRRAFASNTATACRAAVLAGG 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G  +   +   D+     LVR++     P   ++  +P A   + K++A 
Sbjct: 240 GFGVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRAL 289


>gi|154707716|ref|YP_001424195.1| transcriptional regulator, LysR family [Coxiella burnetii Dugway
           5J108-111]
 gi|154357002|gb|ABS78464.1| transcriptional regulator, LysR family [Coxiella burnetii Dugway
           5J108-111]
          Length = 294

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 131/286 (45%), Gaps = 9/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
              F  VA SG FT AA+QL +S++++S  I  LE  +   LF R  R + LTE+G  L 
Sbjct: 9   FEAFLCVAESGGFTPAAKQLGISKAAVSHTIRLLEESLRTPLFVRDTRNIRLTEEGELLF 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+  +  +   +  PSG LR++      +  L   L+ +   +P ++++L+
Sbjct: 69  SQCKRLKEELDAARNLVAGFNSSPSGTLRMSCNPYFAETHLFDLLQTYTQRFPKVKVELL 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++ +  ++  +  D    +  P   S ++ + +        A+P YL     P +++ L+
Sbjct: 129 VEERMPNMEREKIDIVFGINWP-APSGVVAKTIDKTRYVLCASPKYLNKFGIPKTVKALE 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I      P+     N +  +   +       L++N+   I +  + G GI  L DY
Sbjct: 188 QHRYIPHLGRSPE-----NVIMNLKNKVTLNLTPQLKLNNAHLIKKCALNGLGIIQLHDY 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +VK+   N +LV +++D       +Y  Y +      K++ F N +
Sbjct: 243 MVKEELANGSLVEVLKDHFQAEIPIYIYYQKHRFVQPKVRQFINLV 288


>gi|92114572|ref|YP_574500.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91797662|gb|ABE59801.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 321

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 143/321 (44%), Gaps = 51/321 (15%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L+ F  VA  GSF+ AAEQLHL+Q ++S++I+GLE +VG +LF R  R +TLTE 
Sbjct: 25  MDTQSLQAFLAVADHGSFSLAAEQLHLTQPAVSKRIAGLEGQVGAQLFDRLNRRVTLTEA 84

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++    + ++  L   S   SG L +AT+  +G + L   LK +   YPD+
Sbjct: 85  GRTLLPRARQILVMFDDSRRALSNLSGDISGSLTMATSHHVGLHRLPPLLKAYTQAYPDV 144

Query: 123 QIQL-ILDNK-------DIDISMDYADCAIRLRKPIQSSSLI-------QRKLVTIHMHA 167
           ++ +  LD++       D D+ +     A+    P+   +L        Q + V    HA
Sbjct: 145 RMDMRFLDSEQAYQGVLDGDLEL-----AVVTLAPVPDPALTVVPVWIDQLRFVCGREHA 199

Query: 168 YAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN- 226
            A        R+ +++  L  ++ +  G L       F     VD    +     LQVN 
Sbjct: 200 LAG-------RDTVALSALSDYDAVLPGHLT------FTRGIVVDTFARD----GLQVNV 242

Query: 227 ----SYLSIMQYCV-LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG 281
               +YL  ++  V +G G ++LP+ ++ D   ++ I    I       F     L N  
Sbjct: 243 SLSTNYLETLKMMVAIGLGWSVLPETMIDDEIEVIPIDHRPIQRPLGYLFHKSRTLSNAA 302

Query: 282 K-----LKAFRNFIFLKARDW 297
           +     L A R+     AR W
Sbjct: 303 RAMLEMLDAARD---TTARQW 320


>gi|62262179|gb|AAX78051.1| unknown protein [synthetic construct]
          Length = 333

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LET+    LF R+ R + LTE G 
Sbjct: 30  LERLKIFIKAAHLKSFSKAAKAIGISPPVVSKQIQILETKYRKSLFNRNTRTVHLTEYGK 89

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 90  LLYEKASLILNELEATEEKIFAEDILIDSELKISAPNSFGIKYLCNIFSKFAIDYPKYKL 149

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+++     A+  YLKN   P +I+
Sbjct: 150 NINLSDSYINIIDEDFDLVIRI-GALDDSNLITKKLMSMPSLLCASEQYLKNYGIPKTIK 208

Query: 185 ELDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L+ H  I + +        +E  N    ++      RI     NS   ++Q C+ G GI
Sbjct: 209 DLENHLFIQYNNHSSSNRIILESVNKTEIIN---VRQRIVT---NSAGMMLQSCLDGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITP 265
           A LP + + D   +  LV ++ +   P
Sbjct: 263 AKLPLFEIIDKLHDKKLVHLLPNTRNP 289


>gi|260427438|ref|ZP_05781417.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260421930|gb|EEX15181.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 278

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 124/263 (47%), Gaps = 10/263 (3%)

Query: 30  SQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSV 89
           SQ +  RQ+ G+E ++G++LF R  RGL LTE G+ L      +   L++ ++  +  S 
Sbjct: 15  SQPTAGRQVRGIERQLGVELFRRQPRGLDLTEPGAALLPHAQAMRDSLQSLRLAAEGRSE 74

Query: 90  KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKP 149
           + +G +RI  ++      L   +     L P+I I L+  ++  ++    AD A+R+ +P
Sbjct: 75  RLAGTVRITASVMSAHYHLPPIIARIRTLEPEIAIDLVPTDQTENLHYREADIAVRMYRP 134

Query: 150 IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG--DLIPKCMEDFNW 207
            Q   L+ R L  + M  YAA  YL     P +++ L + +L+     D++ + M     
Sbjct: 135 EQ-LDLVLRHLGDLEMGVYAARDYLDRRGRPDTLEALWQSDLVGLDRRDMMLRAMRGMGL 193

Query: 208 LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF 267
            AT D        +C   + +++  +    G GI +L   I   +P L R++  +  P  
Sbjct: 194 PATRDW-----FSTC--CDDFVTGYELVASGCGIGVLQCNIADRDPRLERLLPGLRLPGL 246

Query: 268 TVYFCYPEALKNTGKLKAFRNFI 290
            VY    EA++ T ++   +  +
Sbjct: 247 PVYLTVHEAMRRTPRIARVQELL 269


>gi|213971086|ref|ZP_03399206.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301384191|ref|ZP_07232609.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302064060|ref|ZP_07255601.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302132850|ref|ZP_07258840.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213924194|gb|EEB57769.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 314

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 13/273 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLAVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHIRMGCTEGFGSFFITPQLSHFLDNYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +     
Sbjct: 131 ISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQEYLDSHAPIQ 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVLGS 239
              +L  H  I++ D +    E   +L+ +  P  +      Q+ S   I QY   + G 
Sbjct: 190 RKADLSDHIFISYVDDLAFSSE-LLYLSNL-LPNAQA-----QLRSTSVIAQYTAALQGR 242

Query: 240 GIALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
            +A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 243 ALAILPCFLAAQDPRLLPVLTEEVNITRQFWMY 275


>gi|257484254|ref|ZP_05638295.1| LysR family transcriptional regulator protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 285

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 87/174 (50%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SFTHAA +L ++ S++S  I  LE  +G++L  R +R ++ T+ G+ L +  +  ++++ 
Sbjct: 3   SFTHAAVELGITTSALSHSIRNLENRLGVRLLNRTSRTVSATDAGAALAKRLAVGFNEIS 62

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
                L     +PSG+LR+    D  + L    L  FL  YP++ +++ +D++ +DI   
Sbjct: 63  GALAALDRHRDRPSGRLRLNVLSDGARLLFTKYLPPFLEAYPEVSVEVAVDDRMVDIVSA 122

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
             D  +R    I    +  R    +   A A+P YL      +  ++L  HN I
Sbjct: 123 GFDAGVRFGNTIPEDYIAVRLSEDLRWVAVASPRYLNANPRIVIPEDLKNHNCI 176


>gi|206564168|ref|YP_002234931.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198040208|emb|CAR56191.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 304

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 131/299 (43%), Gaps = 36/299 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR GS   AA+ L +S  ++S+ +  LE  + ++LF R  R L LT  G  L 
Sbjct: 10  LHTFVEVARCGSMKQAADLLCISPGAVSQHVRNLEDRLAVRLFERTGRELELTGTGRALF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +  ++++E     +  ++ +   +L + TT       L   L  F   YP+I+I + 
Sbjct: 70  DQLAGGFNEIEAAWASVHGANRRIV-RLAVTTTASFANTWLVQRLGSFHAAYPEIEITVE 128

Query: 128 LDNKDIDISMDYADCAIR---LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE----- 179
              + +D+  DY D AIR    R P  +S     ++ T  +    +P  L   R      
Sbjct: 129 TRAQLVDLRRDYVDVAIRHGLGRYPGHASF----RIWTPELWPVCSPQLLDPARPIDAPA 184

Query: 180 -----PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
                PL +Q+ D+ + + +  L  + +ED             PR +    ++ L  ++ 
Sbjct: 185 DCLSYPL-LQDADRADWVLW--LRTQGIEDAR----------APRGASFSEDALL--IRA 229

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V G GIAL+ D   +D      LVR++       F+ Y    E  ++  K+ AFR+++
Sbjct: 230 AVAGQGIALVRDIYARDEVAAGRLVRVLARPWPTEFSYYVVCSEVRQHEWKIAAFRDWL 288


>gi|167579901|ref|ZP_02372775.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 310

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 3/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     SGK+R+++T D G+N L   L EF   YPD+   + 
Sbjct: 67  NCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRNQLLDWLDEFNARYPDVTFSVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R L        A+P ++     P    +L 
Sbjct: 127 ASDSSSNLWQDEIDLAIRFAAP-PDGALIARPLAANRRVLCASPAFVDKYGTPKDPLDLA 185

Query: 188 KH--NLIT 193
           +   N+IT
Sbjct: 186 RFPCNVIT 193


>gi|297584327|ref|YP_003700107.1| LysR family transcriptional regulator [Bacillus selenitireducens
           MLS10]
 gi|297142784|gb|ADH99541.1| transcriptional regulator, LysR family [Bacillus selenitireducens
           MLS10]
          Length = 301

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 122/266 (45%), Gaps = 9/266 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK- 65
           ++R F  VA     T AA  LH++QS++SRQI  LE E+G+ LF R  R L LT  G   
Sbjct: 5   QIRYFIEVANREHMTDAANALHVAQSAVSRQIVNLEEELGVDLFIREGRNLKLTPIGRTF 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R+T  V      TQ E+ E      G +RIA  I L  + L   +  F + YPD + Q
Sbjct: 65  LERITHAVNVIDGATQ-EVSEYLEPEKGTVRIAYPISLAAHTLPRAISSFRMRYPDAKFQ 123

Query: 126 LILD-NKDIDISMDYADCAIRLRKPI-QSSSLIQ-RKLVTIHMHAYAAPHYLKNCREPLS 182
           L+   NKD+   +   D  + +  P+ +    IQ R L T  + A    H+    RE + 
Sbjct: 124 LMQRLNKDLITGIVKGDFNMAMIGPLPKDDRRIQTRALFTEKVVALLPRHHRLADREDIR 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L     +    L+P+  E    +    + +G       + +   ++      G G+ 
Sbjct: 184 LRDLKDEPFV----LLPEPFEFRQIVLDACKEVGFTPYIAFEGDDIDALKGLVAAGLGVT 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT 268
           L+P+  + D+  L  + + +  P+ T
Sbjct: 240 LMPEVTLMDSLFLSTVKKPITDPNVT 265


>gi|85703568|ref|ZP_01034672.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
 gi|85672496|gb|EAQ27353.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
          Length = 301

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 118/262 (45%), Gaps = 10/262 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD L+ F  VAR G  + AA QL  S  ++SR+I  LE  + ++LF R+ RG  LT  G 
Sbjct: 6   WDDLQFFLAVAREGQLSRAARQLQTSHVTVSRRIDRLEAGLELRLFERNPRGYELTSNGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +  + +   ++L        G LR+A          +  L +F+  +P+I +
Sbjct: 66  RLVETAERMEQEADRLLLDLTGDIRAQRGLLRVAMPEGFASFFSESLLPQFMDKFPNIAL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI   + + +S   AD ++ L  P ++S     K+V   +  Y    YL+        +
Sbjct: 126 ELITLPQVMSLSRREADLSVTL-DPTKASPYHSEKIVDYALRVYGTRQYLQARTAITRRE 184

Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
           +L  H    +  D+I       ++L  V      P++    + +S  + +     G  + 
Sbjct: 185 QLLDHPFAGYIEDMI--FARGLDYLGDV-----HPKVRPVFKSSSIFNQLAAVRAGLCLC 237

Query: 243 LLPDYIVKDNPNLVRIMEDVIT 264
           +LP YI +   +LV ++ D IT
Sbjct: 238 VLPCYIARHYDDLVPVLPDEIT 259


>gi|299771324|ref|YP_003733350.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298701412|gb|ADI91977.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 326

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 131/288 (45%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G  + 
Sbjct: 10  LKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDGKLIL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +QI   
Sbjct: 70  ERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHIAPILSKLMMLYPKLQIHFD 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+     D  IR+   I + ++I +KL +      AAP YL     P SI++L 
Sbjct: 130 TIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCAAPSYLLKHGVPDSIEDLQ 188

Query: 188 KHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ +T  +      +  F   +       +PR      N+   I Q  + G GI     
Sbjct: 189 THDCLTISERDQSSVLWKFRHTSEDVSVHVKPRFVS---NNGEIIHQLAIEGHGIIFRSI 245

Query: 247 YIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
           + V D   L+      I P +     ++  YP  LK++ KL+    FI
Sbjct: 246 WDVAD--ELITGQLQHILPEYWQDADIWAVYPSRLKSSSKLQTCILFI 291


>gi|209544224|ref|YP_002276453.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531901|gb|ACI51838.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 308

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 5/183 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRV    A  GS + AA  LH++ SS+SR I+ LE ++G  +F R  RGL LTE G +  
Sbjct: 7   LRVLVATADGGSLSRAAGVLHMTVSSVSRAITVLEQDLGAAVFNRSTRGLHLTEIGGRFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +L+  + E    +  P G+LR+  +  +G+ ++   L  FL  YPDI + L 
Sbjct: 67  ARARDILAELDDARAEAASLNAAPRGRLRVLASPSVGRAVIAPLLPGFLKAYPDIDLDLR 126

Query: 128 LDNKDIDISM----DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                 D+S       AD A+   +P   S L+ R ++T      A P  +     P  +
Sbjct: 127 SGPAGGDLSHILIESGADIAVVTGRP-PDSGLLFRPVLTGSWWLMAPPGRVPADAGPDDL 185

Query: 184 QEL 186
             L
Sbjct: 186 SGL 188


>gi|152970290|ref|YP_001335399.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955139|gb|ABR77169.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 300

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 1/192 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ L++F  V    SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+ 
Sbjct: 5   LDFNALKIFIAVVERDSFVGASKALEMPTSNVSRCISQLEDKLNLQLIERSTRHMKLTQA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   +PD+
Sbjct: 65  GHLLYTRAKPLLEALEQTETELTLRQMQFKGPLRICIPNEIGPVLLGSVVADFACQHPDL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I  + +    +   D  D A+ + R  +  S  I R LVTI     AAP  ++    P 
Sbjct: 125 EISCVTNLSGYESLRDDLDLAVIVSRGQMDDSDYIARHLVTIPCTIVAAPSVIQRYGTPS 184

Query: 182 SIQELDKHNLIT 193
            IQ+ ++   IT
Sbjct: 185 RIQQFEELPCIT 196


>gi|170720368|ref|YP_001748056.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758371|gb|ACA71687.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 298

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 127/290 (43%), Gaps = 15/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V    SF  AA +L +S ++++R +S LE  +G+KL  R  R + LT+ G +  
Sbjct: 7   MKVFVAVGELESFAAAARRLDISPAAVTRAVSALEDMLGVKLLLRTTRSVRLTQAGGRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +   +          +  P G+L +   I  G+  +  ++  +L  YP++ +   
Sbjct: 67  EDTRHILASIFEANEAAAGINATPKGELAVTAPILFGKKFVMPSIVRYLQQYPEVDVSAY 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D A+R+  P+  S L   ++  +     A+P YL     P    +L 
Sbjct: 127 FLDRIVNLVEEGMDVAVRI-GPLPDSGLKALRVGRVRRMLCASPEYLARQGVPQHPSDLP 185

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H +I   +L P+      W     D P     +PR   L V S    +   + G GIA 
Sbjct: 186 AHAVIATTNLSPRA----GWRFGVTDEPTMVRIKPR---LTVTSNDGAIAAALGGLGIAR 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y V D   +  L  I+ D     + ++  + E+   + K++ F + +
Sbjct: 239 LLSYQVVDEIASGQLQVILADYEEAPWPIHVLHRESKHGSAKVRMFVDML 288


>gi|56708327|ref|YP_170223.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670798|ref|YP_667355.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224457451|ref|ZP_03665924.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370949|ref|ZP_04986953.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875149|ref|ZP_05247859.1| lysR transcriptional regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604819|emb|CAG45900.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110321131|emb|CAL09283.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151569191|gb|EDN34845.1| hypothetical protein FTBG_01695 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841148|gb|EET19584.1| lysR transcriptional regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159564|gb|ADA78955.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 298

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LET+    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKAIGISPPVVSKQIQILETKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 64  LLYEKASLILNELEATEEKIFAEDILIDSELKISAPNSFGIKYLCNIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+++     A+  YLKN   P +I+
Sbjct: 124 NINLSDSYINIIDEDFDLVIRI-GALDDSNLITKKLMSMPSLLCASEQYLKNYGIPKTIK 182

Query: 185 ELDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L+ H  I + +        +E  N    ++      RI     NS   ++Q C+ G GI
Sbjct: 183 DLENHLFIQYNNHSSSNRIILESVNKTEIIN---VRQRIVT---NSAGMMLQSCLDGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITP 265
           A LP + + D   +  LV ++ +   P
Sbjct: 237 AKLPLFEIIDKLHDKKLVHLLPNTRNP 263


>gi|121604536|ref|YP_981865.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593505|gb|ABM36944.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 320

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 133/307 (43%), Gaps = 11/307 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   V   GS   AA  L L+   ++++++ LE  +G +LF R  R ++ T +
Sbjct: 1   MDRTDLELVVAVRDHGSLAAAARSLDLAAPMVTKRLAALEARLGQRLFQRTTRRVSPTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +      +       + ELQE   +P+G +R+A T   G+  L   L  F   +P I
Sbjct: 61  GETVCERAVVLLQGFSALEAELQERKAEPTGLIRLAATFGFGRLWLGPALAIFQERHPRI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQL L  +  D++ +  D AI L   +  Q++  + R+L        A+P Y++    P
Sbjct: 121 DIQLQLTEQLPDLASEGFDGAIWLWSVQGRQAAQWVSRRLARNQRVLVASPGYVQRHGMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC---LQVNSYLSIMQYCV 236
             I  L +H  +   +      + F+ W           R+     L  NS   +  +C+
Sbjct: 181 EDINALQEHACLIVRENGNSQGQSFDTWTLHKGNSKTPERVRVRGPLSSNSGELVRDWCL 240

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI L   + +     +  LVR+++D   P   +++  P    +  +++   +F+  +
Sbjct: 241 DGRGIMLRSLWDIAPWLASGQLVRVLQDHAMPDADIHWLAPYRTDSPRRIRLLIDFLVAQ 300

Query: 294 ARD--WK 298
            +D  WK
Sbjct: 301 FQDEPWK 307


>gi|323937057|gb|EGB33337.1| lysR family bacterial regulatory helix-turn-helix protein
           [Escherichia coli E1520]
          Length = 263

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 95/181 (52%), Gaps = 1/181 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G +
Sbjct: 15  NDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGER 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +   +     EL +    P G LRI ++   G+ ++   L      YP ++++
Sbjct: 75  IYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLELR 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + +
Sbjct: 135 FDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLTD 193

Query: 186 L 186
           L
Sbjct: 194 L 194


>gi|162147169|ref|YP_001601630.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785746|emb|CAP55317.1| putative LysR-family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 321

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 5/183 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRV    A  GS + AA  LH++ SS+SR I+ LE ++G  +F R  RGL LTE G +  
Sbjct: 20  LRVLVATADGGSLSRAAGVLHMTVSSVSRAITVLEQDLGAAVFNRSTRGLHLTEIGGRFL 79

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +L+  + E    +  P G+LR+  +  +G+ ++   L  FL  YPDI + L 
Sbjct: 80  ARARDILAELDDARAEAASLNAAPRGRLRVLASPSVGRAVIAPLLPGFLKAYPDIDLDLR 139

Query: 128 LDNKDIDIS----MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                 D+S       AD A+   +P   S L+ R ++T      A P  +     P  +
Sbjct: 140 SGPAGGDLSHILIESGADIAVVTGRP-PDSGLLFRPVLTGSWWLMAPPGRVPADAGPDDL 198

Query: 184 QEL 186
             L
Sbjct: 199 SGL 201


>gi|37527978|ref|NP_931323.1| hypothetical protein plu4133 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787414|emb|CAE16505.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 302

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 2/189 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  S   + AA +L ++ S++S+ I+ LE  +G++L  R  R L LT +GS  
Sbjct: 9   EMAVFVQVIESEGLSAAARKLDMTPSAVSKLINRLEMRLGVRLLNRTTRKLQLTAEGSVF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +   +   + E  + +    G++R+   +  G++ L   L +FL  YP+I + +
Sbjct: 69  YERSVRILEDIIAAEQEANQGTAL-RGRIRVNCHVAFGKHCLMPLLPDFLQRYPEITLDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  D +D AIR   P+  S  + RKL    M    +P YL+    P    +L
Sbjct: 128 SLCDLIVDLLDDRSDVAIRT-GPLDDSCFMVRKLGASRMVVVGSPSYLERMGIPSMPSDL 186

Query: 187 DKHNLITFG 195
            ++N + FG
Sbjct: 187 GRYNRLGFG 195


>gi|330821374|ref|YP_004350236.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
 gi|327373369|gb|AEA64724.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
          Length = 301

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 9/285 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR    V+   SF  AAE L L+ S++S  +  LE  +G +L  R  R ++ T+ G +L
Sbjct: 9   ELRALAAVSSQRSFRKAAEALELAPSTLSHMMRELEERLGTRLLNRTTRSVSPTQAGERL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +   L+    EL  S   P G+LR+  +  +   L++  +  F+  YP++++ L
Sbjct: 69  VAQLAPILAGLDEALAELSASREAPGGRLRLTASETVSMLLVRHVMPVFIERYPEVEVDL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +   +DI  +  D   RL   +    +  R      M   A+P YLK  R P +  EL
Sbjct: 129 VAEPAFVDIVAEGYDAGFRLGDDVPRDMVAIRFGSPSRMLPVASPAYLKGRRAPRTPDEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  I            + W        I       L +N    +++  + G GIA++P
Sbjct: 189 REHRCIRART---PAGRPYRWEFERRGEAISLDVQGALTLNRTELMIEAALKGLGIAMVP 245

Query: 246 DYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + +    ++D  +L  ++ D       ++  YP   +    L+AF
Sbjct: 246 EKLALPHLRDK-SLRALLADWCPVYPGLFLYYPGHRQVPAALRAF 289


>gi|325168828|ref|YP_004280618.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064551|gb|ADY68240.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 299

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 131/299 (43%), Gaps = 29/299 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     VAR G F  AA +L +S S++S  I+ LE  + ++LF R  R ++L+  G + 
Sbjct: 7   ELEAVAGVARHGGFRAAARELGMSSSALSHAIAALEERLAVRLFNRTTRSVSLSAAGEQF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +     LE     + E S +PSG+LR+       + LLQ  + E+   YPD+ I++
Sbjct: 67  LSEIAPALQTLEKAIENVGEHSDRPSGRLRLNMAPGAARILLQPLILEYSRRYPDVDIEI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +N  +D+     D  IRL + I    +    +  +      +P Y     + +   +L
Sbjct: 127 VTENALVDVIGKGFDAGIRLAEAISPDMVAVPIIPKMRSFVVGSPRYFDGRSKLVVPADL 186

Query: 187 DKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCV 236
            +H  I    T G L     E +     +D            V+ +L+      I++  +
Sbjct: 187 ARHVCIQMRMTSGRLYRWEFEKYGETHLID------------VSGHLTFDGSDLILEAAL 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+A L ++ +     + +L+ ++ED     P  ++YF     +    KL+AF   I
Sbjct: 235 AGFGLAYLGEHALAPHIASGDLIPVLEDWSPEYPGLSLYFSQRRHMP--AKLRAFIELI 291


>gi|264679851|ref|YP_003279760.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210366|gb|ACY34464.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 318

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 121/248 (48%), Gaps = 19/248 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F  VA+ GSF+ AA    +S S++S+ ++ LET +G++L  R  R L LT +G +L
Sbjct: 14  ELQTFVQVAQQGSFSAAARLREISPSAVSKIVARLETRLGVQLLRRSTRRLELTAEGEQL 73

Query: 67  HRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                E   +L    + L ESSV    +P+G +RI  +   G  LL   +   +  +P +
Sbjct: 74  ----LEQGRQLLADWLAL-ESSVTRQGQPTGVVRINASSSTGNRLLVPLVGPLMRTWPGL 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L   +  +D+    AD A+R  + + SS ++ RKL        A+P YL+   +P  
Sbjct: 129 QLDLSFTDHVVDLIAARADIALRWGE-LPSSDMVARKLGHTRQVIVASPDYLQRFGKPAH 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             EL  H  +  G   P+ +  + ++     V   +GE     L+VN   ++      G+
Sbjct: 188 PDELSGH--VRIGWNYPRAIPHWPFVVAGKAVTVSMGE----VLRVNDGEAMANLAKAGA 241

Query: 240 GIALLPDY 247
           G+A L  Y
Sbjct: 242 GLARLSLY 249


>gi|167584325|ref|ZP_02376713.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 322

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 125/284 (44%), Gaps = 3/284 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++P+GK+RI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPTGKMRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P + ++
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTPQTPED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KH  +          E        D  + E   +  QVN   ++      G GIA + 
Sbjct: 185 LPKHTCLRLDTPASPASEWRLEHKDGDEQVFELPPAPFQVNVPDALCVAVRAGRGIACVA 244

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            Y V D+     L+R++ +    + +VY  Y        K++ F
Sbjct: 245 LYTVLDDIREGRLIRVLPEYRLQTLSVYAVYATRRYLDAKIRTF 288


>gi|294500702|ref|YP_003564402.1| LysR family transcriptional regulator [Bacillus megaterium QM
           B1551]
 gi|294350639|gb|ADE70968.1| transcriptional regulator, LysR family protein [Bacillus megaterium
           QM B1551]
          Length = 299

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 12/248 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W +L  F VVA++  FT AAE+L ++Q ++SR IS LE+E+G+ LF R  R + L   G
Sbjct: 2   EWQQLEYFNVVAQTEHFTKAAEKLSIAQPTLSRSISKLESELGVPLFERKGRQVILNRYG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +  T++V +++E  + EL +      G +  A    LG + +   +  FL  YP++Q
Sbjct: 62  RLFYERTAKVLNEMEEAKRELSDLIHPHRGSISFAFLKSLGASSVPKLVHAFLQEYPNVQ 121

Query: 124 IQLILDNKDIDI-SMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPL 181
            Q+  +  +I +  +   +    +    +S + IQ + L    ++AY    +    ++ L
Sbjct: 122 FQIFENATNIMLDQLQTGEIDFCMSSVTESRAGIQWEYLWKDELYAYVPDTHSFASKQVL 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLG 238
           SI EL   + I          + +      D+   E  I      +   +L+++ +    
Sbjct: 182 SISELAHESFIA-------LKKGYGSRTIFDQLFDEAEIVPNITFEGEEFLTVIGFVAAH 234

Query: 239 SGIALLPD 246
            GIALLP+
Sbjct: 235 LGIALLPE 242


>gi|289803975|ref|ZP_06534604.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 188

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 2/180 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G   L
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +   + H  E  +   Q   + P G LR+         LLQ NL  F+  YPDI++ +
Sbjct: 69  ASIRPALNHIDEAMEHACQSRDI-PGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL
Sbjct: 128 DVNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQEL 187


>gi|206562447|ref|YP_002233210.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038487|emb|CAR54445.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 299

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 125/299 (41%), Gaps = 12/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+G F  AA    LS S +S  +  LE  +G++L +R  R +  T
Sbjct: 1   MQTDLGDLNAFMAVARAGGFRDAARMTGLSASGLSEAVRRLEARLGVRLLHRTTRSVVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L         ++      + E   +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGERLLARLGPALTEVAAALDGIDEFRGRPAGTLKLNVPVSASRLVLPAIVPRFLDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCRE 179
           DI++++  D   +D+     D  IR  + ++   +       +   A  AAP YL     
Sbjct: 121 DIRLEVTADENFVDVLAAGCDAGIRYDERLEQDMIAVPIGPRVQRFATAAAPGYLDRHGR 180

Query: 180 PLSIQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QY 234
           P   ++L  H  +      G + P   E    +  V+ P   P +  +Q+     +M   
Sbjct: 181 PRHPRDLLDHRCLRGRFASGAMPPWEFERDGEVVRVE-PAAGPLL--VQIGGATELMVDA 237

Query: 235 CVLGSGIA-LLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G+GI  L  D++    D+  L  ++E    P    +  YP        L+AF +FI
Sbjct: 238 AIAGTGIVHLFEDWLRPHVDSGALEPVLEPWWRPFSGPFLYYPGRRLVPPALRAFIDFI 296


>gi|153836871|ref|ZP_01989538.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149749829|gb|EDM60574.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 183

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 91/169 (53%), Gaps = 1/169 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 5   DDYIIFYHLVEQGSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGQS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  VY  + T +  +       SG ++I      G+ +L G + EF   YPDI I 
Sbjct: 65  FFVHAKAVYQAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDINID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
           + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL
Sbjct: 125 MELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYL 172


>gi|160901070|ref|YP_001566652.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366654|gb|ABX38267.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 302

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 121/266 (45%), Gaps = 12/266 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F     +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L+LT +G + +   
Sbjct: 10  FARAVETGSFSAAGRDLGLGQPNVSRYVAALEDHLQARLLHRSTRKLSLTPEGERYYADI 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   ++ ++   + ++V+PSG LR+A    L    +  ++  FL  YP + + L  ++
Sbjct: 70  RRILDAVDESESSFR-NNVEPSGLLRVACPTALAHAFVLPHVPTFLERYPQLTLDLQFND 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  + AIR+   ++ SSL  R+L        A+  YL     P +  +L  H+
Sbjct: 129 RYVDLVNEGTEIAIRIGH-LEDSSLRARRLGWYDRVFVASKDYLAKRGVPQTPDDLRDHD 187

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            I +  L    +  F      D P+       L+VNS  ++      G G+A  P ++ +
Sbjct: 188 CIIYTLLSSGAIWRFR---DADIPVS----GRLRVNSPDAVSAAVTAGLGVAQGPAWLFE 240

Query: 251 DNPNLVR---IMEDVITPSFTVYFCY 273
              N  R   I+ D   P   V   Y
Sbjct: 241 GGLNSGRLQFILTDHAAPPVPVQIVY 266


>gi|253995382|ref|YP_003047446.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253982061|gb|ACT46919.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8]
          Length = 304

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 121/257 (47%), Gaps = 10/257 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GSF  A+ ++ + +S+ISR+I  LE  +G +L  R  R   +TE G   +  
Sbjct: 9   LFAEVVNGGSFAAASRRVRIPKSTISRRIGLLEERLGARLIERSTRRFRVTEIGQSFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   +E     + ES  +P G +R +  + L +  L      FLL +P  ++QL+  
Sbjct: 69  CKVIMLDVEQADSIVSESLSEPKGLVRCSCPLGLYET-LSPIFSSFLLNFPHARLQLVAG 127

Query: 130 NKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +  +++  D  D AIR+R  + +  SL+ R L        A+P+ L N  +   +  L +
Sbjct: 128 DNPVNLIEDRIDVAIRIRTVLDTDGSLVMRTLGHSERVLVASPN-LANGIDQSRLDNLSE 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              I+  D        F+  +   + I  EP++SC+    + ++ +  + G GIALLPD+
Sbjct: 187 LPTISTSDQNSTIEWQFHHASLGTKSIRHEPKLSCID---FATVREAAIAGIGIALLPDH 243

Query: 248 IVK---DNPNLVRIMED 261
                  N  LVR+  +
Sbjct: 244 TCSHDLQNGRLVRVFPE 260


>gi|237801384|ref|ZP_04589845.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024243|gb|EGI04300.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 265

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 11/258 (4%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
           ++SR+++ LE ++G++L +R  R ++LT +G         +    ET +  L+  +   S
Sbjct: 2   AVSRRLAALENDLGVRLVHRTTRSVSLTPEGEVFLPHAKTMLDANETARATLKADAGTAS 61

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G LR+      GQ ++   L   +L  P + I L L +  +DI+    D AIR+   I+ 
Sbjct: 62  GILRVTAPSVFGQTVIMPMLPALMLENPALSIDLTLSDSIVDIAGQGIDVAIRIAT-IRD 120

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
           S+L+ R L        A+P YL     PL + EL  H  I    +       F       
Sbjct: 121 SALVARSLAPNPRVVCASPDYLVRRGMPLVLDELRHHQCIALQAM------PFWSFTRHG 174

Query: 213 RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPN---LVRI-MEDVITPSFT 268
            P+    +     NS  ++   C  G G+A+L  + V+   N   L R+ +EDVI    +
Sbjct: 175 EPVTVRALGSFSANSVEAVRTACRQGMGLAMLTYWDVQQEINEGSLRRVDLEDVIPEQLS 234

Query: 269 VYFCYPEALKNTGKLKAF 286
           V    P   +   +++ F
Sbjct: 235 VTAVLPTRQRVPHRVRLF 252


>gi|153831626|ref|ZP_01984293.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|156976216|ref|YP_001447122.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|148872136|gb|EDL70953.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|156527810|gb|ABU72895.1| hypothetical protein VIBHAR_04988 [Vibrio harveyi ATCC BAA-1116]
          Length = 309

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 139/297 (46%), Gaps = 26/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   +EL  E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 73  DQSIAMVNAAQQA-VELSAEDHAEPTGALTVAAPEAFLNSVLQPFVLPFLDRYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + +ID+     D A +L  KP    +L+ +++   ++   A+P YL     P    E
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDKP--DENLVLKEISKTNLVLCASPDYLAKHGMPAHPTE 189

Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L++H+ I   +     +      E F+ +A   R           VN     +     G 
Sbjct: 190 LEQHDCIYLAENDKDNIWSFFKEEAFHSIAVSGR---------YAVNHSQMRLNGVKSGL 240

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  D+++KD      +V ++ D +  S     +   Y +      +L+ F +F+
Sbjct: 241 GIGIFHDFVIKDALEQGEVVEVLPDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFV 297


>gi|217422609|ref|ZP_03454112.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217394840|gb|EEC34859.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 307

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 125/289 (43%), Gaps = 13/289 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  +  LE E+G  L  R  R L +TE G
Sbjct: 14  NLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEIGASLVVRTTRRLNVTEAG 73

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    ET    +   +    G LR++  +D G  ++   L      +P ++
Sbjct: 74  RAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPALE 133

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P S 
Sbjct: 134 IELQCDDRVVDLVRDNLDVAIRLGR-LADSNHRAAKLGGFERWLVASPAFVARHGAPASP 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240
           + L     +    +    +E  N  A  +R      + C +    N+  +     + G G
Sbjct: 193 EALGALPYVMLSTVPRTTLELAN--AHGER----ASVRCRRAFASNTATACRAAVLAGGG 246

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +   +   D+     LVR++     P   ++  +P A   + K++A 
Sbjct: 247 FGVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRAL 295


>gi|54302643|ref|YP_132636.1| LysR, transcriptional regulator [Photobacterium profundum SS9]
 gi|90412654|ref|ZP_01220656.1| hypothetical LysR, Transcriptional regulator [Photobacterium
           profundum 3TCK]
 gi|46916067|emb|CAG22836.1| hypothetical LysR, Transcriptional regulator [Photobacterium
           profundum SS9]
 gi|90326462|gb|EAS42874.1| hypothetical LysR, Transcriptional regulator [Photobacterium
           profundum 3TCK]
          Length = 308

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 134/299 (44%), Gaps = 29/299 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +   V    +FT AAE+L +S+S +S+QI  LE  +G +L  R  R + LT+ G + 
Sbjct: 7   QMVILATVGNEQNFTRAAERLGISKSQVSKQIRFLEERLGCQLVQRSTRTVALTDIGLQY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +   +  +     +  G LR+      G + +   L EF   +PD+++++
Sbjct: 67  SEYGQQLVDTVNEAEAMVAGYRDEVKGVLRVGVAQSFGNSNITSALAEFQKAHPDLELEV 126

Query: 127 ILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +   ++  +  DC  AI    P     ++ R+L   +    A+P YL     P    
Sbjct: 127 SLFDHRPNLLEEGFDCWVAIHEHPP---EGMVARRLANCNFVVVASPEYLAEHGVPQLPG 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLG 238
           +L +HN IT+     K +   NW  T D      R  G  RI     ++  +++     G
Sbjct: 184 DLRRHNCITYQSRERKYV---NWEFTRDGVHQSIRARGNYRI-----DNAPAVLDAATSG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA L  Y++ D   N  LV+++     DV  P   +Y  YP       K+++F +F+
Sbjct: 236 LGIAYLSTYLITDELVNNKLVQLLPEWKADVELP---IYAVYPRRKYLAPKVRSFIDFM 291


>gi|206562651|ref|YP_002233414.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038691|emb|CAR54652.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 306

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 92/187 (49%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + V  +L+  ++E Q  + +P G LR+        N L   +  F   +P++++ 
Sbjct: 65  IYERCAAVLDELDALEVEAQTHTREPEGLLRLVAHTTAALNRLVPLIAGFKRAHPNVRLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  I +   + S S + R +  I +   A P YL+    P +  +
Sbjct: 125 VTLTERPVDLVGEGYDIGIVVPYMLTSESTVVRLVERIPVVIVATPAYLQTHARPETPAD 184

Query: 186 LDKHNLI 192
           L  H  +
Sbjct: 185 LADHAFV 191


>gi|167561018|ref|ZP_02353934.1| LysR family transcription regulatory protein [Burkholderia
           oklahomensis EO147]
 gi|167568279|ref|ZP_02361153.1| LysR family transcription regulatory protein [Burkholderia
           oklahomensis C6786]
          Length = 322

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 127/294 (43%), Gaps = 30/294 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G    
Sbjct: 10  LETFVCAVEEGSLSQAARKLAKTPSAVTKAIAGLEATLGVQLLERTTRRLVLTEGGRLYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++V  +L     +L E   +P G LRI      G  +L      F   +P ++I+L 
Sbjct: 70  ATATDVLRRLADGARQLSEHDDEPRGLLRITAAHSFGYAILAPLCTPFAQAFPRVRIELS 129

Query: 128 LDNKDIDISMDYADCAIRLR---------KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L +  +DI  +  D A+R+          KPI S+    R L+       A+P YL    
Sbjct: 130 LSDHYVDIVGEGFDLALRMGNYDLPSQIVKPIGSN----RSLLC------ASPDYLARRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P++  +L +H+ + +          F+   T +R   EPR   L  ++Y   +   + G
Sbjct: 180 RPVAPADLAQHDCVIYRHPTLANTWTFDRDGTRERI--EPR-GLLATDNYALALAATLDG 236

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT--------VYFCYPEALKNTGKLK 284
           +G+   P + V D     R++  +    F         +   YP + + + KL+
Sbjct: 237 AGVLPCPQWSVVDALEAGRLVPLLTAWRFESASFGEDRICAAYPSSRRGSTKLR 290


>gi|72383964|ref|YP_293318.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72123307|gb|AAZ65461.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 290

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 130/299 (43%), Gaps = 26/299 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+  RVF  V R  +   AA+ +++ Q+++ R+I+ LE  +G  LF R + G  LT  
Sbjct: 1   MNWNDTRVFLAVQRERTLRRAAKVVNMDQATVGRRIAALEHALGATLFLRTSDGYVLTSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R   ++         + Q    +  G++R+ TT  L    L   ++     +PD+
Sbjct: 61  GENALRSAEKMEQSAHELARQAQGIDTRLEGEVRVTTTDTLALAFLIPAIERLHAEHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    + ++++   AD A+R  KP  +  L  R L    +  YA+  YLK   EP  
Sbjct: 121 RVLLNTSTQMMNLARREADIAVRTIKP-DNPDLAARLLARWTVGLYASRTYLKRHGEPAV 179

Query: 183 IQELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQY 234
                 H+L+     T G  +P               +GEP  +      VNS L +   
Sbjct: 180 GTGFAGHDLVIYQPHTSGSRLPTL-------------VGEPTHTGRLVSAVNSSLMLRAT 226

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              G  I  +P ++ + +  LVRI    +   P + V+    + L++T +++A  + I 
Sbjct: 227 IRAGIAIGEVPVHLAERD-GLVRIWPKRERAQP-YEVWLVTHQDLRHTARVRAMIDAIV 283


>gi|17548883|ref|NP_522223.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431133|emb|CAD17813.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 297

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 22/217 (10%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S +SR+I+ LE + G++L  R  R  ++TE G
Sbjct: 3   DLNDLYYFVKVVEHGGFTRAGLALGMPKSKLSRRIAALEAQYGVRLLQRSTRHFSVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + +  +  ++    +P G +R++    L +  + G + +F++ YP +Q
Sbjct: 63  REFYERCLGVLVEADAAREIMERERSEPQGTVRMSCPTALLEYRIAGLVAQFMVEYPRVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        A P +L+       
Sbjct: 123 VHLEATNRRVDVMGERLDLALRVRFPPLEDSDLVMRVLSDSQQRLVACPAFLE------- 175

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR 219
                       G  +PK   D   + T+D   G PR
Sbjct: 176 ------------GRALPKHPADLAGMPTLD--WGPPR 198


>gi|218508457|ref|ZP_03506335.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 238

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 92/184 (50%), Gaps = 2/184 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GSF    + + LS+S+  + +  LE  +G +L  R  R L+LT++G   +  
Sbjct: 11  IFMAVVDAGSFIAGGQAMGLSRSAAGKAVIRLEDRLGARLLNRTTRRLSLTDEGRLFYEH 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             EV   ++  +  +   S  P G LR+      G+ ++   +++++L +PDIQ+++   
Sbjct: 71  GLEVLASVDEAEASVAGQSGAPRGVLRLTVPDAFGRLVVLPIVEKYILAWPDIQVEVNFT 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++  DI  +  D AIR+     +S   L+ R +        A+P YL +  EP  I +L 
Sbjct: 131 DRKADIVEEGFDLAIRIGAMPSASENRLVSRVIAADRARLCASPSYLADRGEPCHIDDLA 190

Query: 188 KHNL 191
            H+L
Sbjct: 191 AHDL 194


>gi|220919799|ref|YP_002495102.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
 gi|219952219|gb|ACL62610.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 302

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 1/188 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R+F  VA SG F+ AA QL++S  +++R ++ LE  +G +L  R  R + LTE G 
Sbjct: 4   WQAMRIFVRVADSGGFSGAARQLNMSPPAVTRAVAALEDLIGTRLLTRTTRSVKLTEAGG 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +   +E  +     S   PSG L +   +  G+  +   + E+L  Y  +  
Sbjct: 64  RYLEDCRRILADIEEAEAAAAGSYATPSGLLTVTAPVQFGRIYVLPVITEYLSRYSAVTA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +  ++ I++  + AD  +R+   +  S L   ++ T+     AAP YL     P   +
Sbjct: 124 RALFVDRVINMVEEGADVGVRIGH-LADSGLTATRVGTVRRVVCAAPSYLDRYGAPKEPR 182

Query: 185 ELDKHNLI 192
           +L  H +I
Sbjct: 183 DLHDHAVI 190


>gi|91776970|ref|YP_546726.1| LysR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710957|gb|ABE50885.1| transcriptional regulator, LysR family [Methylobacillus flagellatus
           KT]
          Length = 304

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 123/275 (44%), Gaps = 12/275 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F V A + SF  AA +L +S  +++R +  LE+ +G  LFYR+ R + +TE G +
Sbjct: 6   EMMRIFCVTAEASSFKEAAARLSISPQAVTRAVKELESLLGEPLFYRNTRHIRITEFGEQ 65

Query: 66  LHRVTSEVYHKLET---TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           L     E  H ++    T   LQE  +   G +RI   + +G+  LQ  L      +P I
Sbjct: 66  LALRAREAIHSMDELFITDNRLQEQDI--GGVVRITAPVVIGRRFLQPVLSRITREHPHI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +   D+     D  +R+   ++ SS + R L  +     A P        P  
Sbjct: 124 TIDLRLSDMHSDVVEQQIDIGVRV-GLLRDSSFVARSLAKVSFLVVATPALAARVGMPQQ 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H++ T   +     +++ W     + I  PR +    +   S +   + G G A
Sbjct: 183 LKDL--HDVPTIALVDKSSGKNWPWFFADGQQIN-PRQASFITDDSDSEVSLALEGVGFA 239

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYP 274
            +   +V        LV +++D + P++ +    P
Sbjct: 240 QIGAPLVIPQLKRGELVSVLDDFVAPAWDLNVYRP 274


>gi|300721592|ref|YP_003710867.1| putative LysR family transcriptional regulator [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628084|emb|CBJ88635.1| putative transcriptional regulator with periplasmic binding protein
           domain (LysR family) [Xenorhabdus nematophila ATCC
           19061]
          Length = 308

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 123/257 (47%), Gaps = 27/257 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF +VA+  SF  AAE++ +S + IS++I+ LE+ + + L +R  R +++TE G +++
Sbjct: 10  LRVFLLVAKRASFAAAAEEMGVSPAFISKRIAILESVLNVTLLHRTTRRVSITEDGERIY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + + +     EL E   +P G +RI ++   G+  +   L   +  YP ++I+  
Sbjct: 70  EWAQRILNDVNQMLDELSELRQEPQGTIRIVSSFGFGRQFVAPALSALVQAYPQLEIRFD 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ ID+  +  D  IR+   I  ++LI RKL +      AAP YL     P S+ EL 
Sbjct: 130 VEDRIIDLVTEGIDLDIRVGDDI-DNNLIARKLASNRRILCAAPSYLARHPMPKSLNELP 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG------EPRISCLQVNSYLS------IMQYC 235
            H  +   +               D P G            ++V   +S      I Q+C
Sbjct: 189 SHACLVIKER--------------DHPFGIWQLQSSAGYQSVKVTGPMSSNHGEIIHQWC 234

Query: 236 VLGSGIALLPDYIVKDN 252
           + G GI L   + +++N
Sbjct: 235 LDGHGITLRSYWDIREN 251


>gi|229505966|ref|ZP_04395475.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229510180|ref|ZP_04399660.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229517691|ref|ZP_04407136.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229605498|ref|YP_002876202.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|229345727|gb|EEO10700.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229352625|gb|EEO17565.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229356317|gb|EEO21235.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229371984|gb|ACQ62406.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
          Length = 319

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 20  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 79

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 80  DQSLLMVNAAQQA-IEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 138

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P+   +
Sbjct: 139 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPIHPTD 196

Query: 186 LDKHNLITFGD 196
           L +H+ +   +
Sbjct: 197 LAEHDCLYLAE 207


>gi|226951991|ref|ZP_03822455.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226837259|gb|EEH69642.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 300

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 114/247 (46%), Gaps = 5/247 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F VVA+  SFT AA +L  SQS+IS+ +  LE  +GIKL  R  R +  T
Sbjct: 1   MKENLNDLHTFIVVAQERSFTRAAAKLRTSQSAISQTLRNLEDRIGIKLLSRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L  +      ++E    +L      P+G LRI+      Q +L   +++ +  +P
Sbjct: 61  EAGEYLLSLIQPAIAEIEHGMNQLSALKNDPAGTLRISADEYGIQTVLWPAIEKVIQQFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
            I +++  D   +DI     D  +R R  + S  +I  ++   I M A A   YL+    
Sbjct: 121 KISVEITSDYGLVDIVDGRFDAGLR-RGGLVSKDMIALQISDPIPMLAVANKEYLQRYGH 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLG 238
           P   ++L +H  I     +P   E + W  T         ++   V + LS ++Q    G
Sbjct: 180 PKQPKDLVEHQCINL--RLPTHGELYRWQFTKGNKTQSVNVNAKIVFTTLSPVLQAVRSG 237

Query: 239 SGIALLP 245
           +GIA LP
Sbjct: 238 AGIAYLP 244


>gi|183600698|ref|ZP_02962191.1| hypothetical protein PROSTU_04290 [Providencia stuartii ATCC 25827]
 gi|188019800|gb|EDU57840.1| hypothetical protein PROSTU_04290 [Providencia stuartii ATCC 25827]
          Length = 303

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 131/282 (46%), Gaps = 14/282 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  +  V   G F+ A   L + +S +SR+I+ LE ++ + L YR  R   +T
Sbjct: 1   MRYDLNDLYYYVKVVEHGGFSQAGLALGIPKSKLSRRIADLEQKLNVSLIYRSTRQFHVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++    V  + +  +  +      P G ++++  + L Q  LQ  L +F++ YP
Sbjct: 61  EIGQTFYQQCKNVVDEAKIAEELICSVQTDPKGIIKLSCPVALLQVYLQDLLVDFMVKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I +Q++  N+ +D+  +  D A+R+R  P+  S L+ + L        A+P   K   E
Sbjct: 121 EIDVQILAVNRPVDVISEGLDMALRVRSLPLDDSGLMMKVLGYSRRVLVASPLLFKGG-E 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATV----DRPIGEPRISCLQVNSYLSIMQYC 235
           PL   E     L+ +  ++       N+  T+    D    +  I  L     L++ +  
Sbjct: 180 PLQQPE----ELVNY-PILANTEHSQNYTVTLKNSEDLSFTQHFIPKLATTDILTLYKAA 234

Query: 236 VLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYP 274
           + G GIA LP  +V+ + +   L+ I+ +   P   ++  YP
Sbjct: 235 LKGIGIARLPYGVVEKDLSSGALIEILPEWRFPEDIIHAVYP 276


>gi|92114892|ref|YP_574820.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91797982|gb|ABE60121.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 308

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 137/294 (46%), Gaps = 15/294 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VA++GS T AA +L LS S++S+++  LE  +G+ L  R  R L LT +G +
Sbjct: 5   DDLAFFQRVAQAGSLTGAARELGLSLSAVSKRLQQLEARLGVSLAARTTRRLALTAEGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +   L   +  L++     SG+LRI  T   G+  +   +  F  L+P +++ 
Sbjct: 65  YLTRGAMILGDLSDLESSLRDQDALLSGRLRINATFGFGRRHVAPLISRFAALHPQLELL 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  + +     D  IR+ +P   S  I R+L++      AAP YL N  +  ++++
Sbjct: 125 LELTSFPLGLDEQGFDINIRVGEP-PDSRWIARRLLSNRRILCAAPAYLANAPKLETLED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGS 239
           L  H  +    ++ +   D++ L   +   G      ++VN  L      ++ +  + G 
Sbjct: 184 LAHHRCL----IVRENDTDYS-LWRFEATEGTRSQRAIRVNGRLASNDAEAMTRMALDGH 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI L   + V +   + +LV ++          Y  Y E ++   +++ F +F+
Sbjct: 239 GILLRSWWDVHEYLASGDLVPLLPQWQGVRADFYLLYSERMRENARVRKFVDFM 292


>gi|73538556|ref|YP_298923.1| helix-turn-helix, Fis-type [Ralstonia eutropha JMP134]
 gi|72121893|gb|AAZ64079.1| Helix-turn-helix, Fis-type [Ralstonia eutropha JMP134]
          Length = 288

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 125/285 (43%), Gaps = 13/285 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  LR+F  +AR+G+   AA ++ L+Q ++ R++  LE  VG  L +R + G  LT++
Sbjct: 5   LEWSDLRIFLAIARAGTLGAAARRVGLTQPTMGRRLRALEAAVGYMLLHRTSDGFVLTQE 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS +      +  +       L  S    +G LR+ ++   G ++L      FL  +P +
Sbjct: 65  GSAILAYAERMEDEALGLARALAGSDNALTGLLRVTSSDWFGIHVLTPVFARFLAHHPRV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+ D +   ++   AD A R+  P +   +IQR +    MH   A +   +   P +
Sbjct: 125 ALELVTDARQYSLTRREADLAFRI-TPFEEPDVIQRTV----MHMDYALYGHVDLEVP-T 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             + +   LI+  D     + D  W A +      PR  +  + N+     + C    G 
Sbjct: 179 AGDGEGIALISM-DTAFGMLPDVAWTARM-----LPRARTVFRSNNRGVQARMCAERGGF 232

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A+LP  +    P L RI      P   V+      L+   +L+A 
Sbjct: 233 AVLPCPLGDATPGLRRIDLGEAPPGRDVWMGCHRDLRRLTRLQAL 277


>gi|307292725|ref|ZP_07572571.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306880791|gb|EFN12007.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 307

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 27/271 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D+D   +F  +   G    A  +L++S + +S+++  LE  +G +L +R  R L LT
Sbjct: 2   MDPDYD---LFATIVDEGGMAAAGRRLNISPAMVSKRLVRLEERLGTRLIHRTTRRLALT 58

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +LH     +   L+  +  +  +S + +G LR+      G+  +  +L  FL  +P
Sbjct: 59  PAGERLHEDLRGILAALDEAERRVSGASAEAAGTLRVTAPTSFGRMHVAPHLARFLEAHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q+ L +   D+    AD AIR+        L   +L T      AAP YL     P
Sbjct: 119 KVRLQIDLSDDYADLLATRADLAIRITTD-PGPGLAAHRLATNRRVLCAAPAYLDRFGTP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-------QVNSYLSIMQ 233
             I  L +H L+     +P       W     R IG PR + +       + NS   + +
Sbjct: 178 HGISGLKRHRLLAAEGQLP-------W-----RLIG-PRGAVMVEGSSHVRTNSSEMVRE 224

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMED 261
             + G GIAL   + V D   + ++ +IM D
Sbjct: 225 LALSGVGIALRSLWDVSDALESGDIRQIMPD 255


>gi|239818221|ref|YP_002947131.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804798|gb|ACS21865.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 324

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 134/294 (45%), Gaps = 25/294 (8%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  +A   SFT AA++L +S S++S+ +  LE  +G++L  R  R + +TE G +L + 
Sbjct: 11  AFARIAHHASFTRAAQELGVSPSALSQTVRTLEGRLGVRLLDRTTRRVGVTELGQQLLKG 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  L      L E+  KP+G LR+       + LL  +  +F   YPDI ++L+ D
Sbjct: 71  AQPALAALAQAVEGLDEARDKPAGLLRLNVARVSAELLLNPHFADFAEAYPDITLELVCD 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ I++     D  IRL + +    +         M   A+P YL   R P + ++L +H
Sbjct: 131 NRMIELVEGGFDAGIRLGESLAQDVVALPVGGPQRMVTLASPRYLAGRRPPKTPEDLREH 190

Query: 190 NLITF----GDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +    G L       + W        +D  +  P IS    N    ++     G+G
Sbjct: 191 QCLNYRLTTGSL-------YRWEYAQDGRVLDVEVAGPLIS----NDGDVLLAAARDGAG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY-PEALKNTGKLKAFRNFI 290
           I +  + +V+   ++  LV ++E    P+F  ++ Y P   +   KL+ F +F+
Sbjct: 240 IMVAFEGMVRGDLESGRLVPLLEP-WWPTFPGFYLYHPSRAQMPRKLRVFIDFL 292


>gi|167564111|ref|ZP_02357027.1| DNA-binding transcriptional regulator CynR [Burkholderia
           oklahomensis EO147]
 gi|167571255|ref|ZP_02364129.1| DNA-binding transcriptional regulator CynR [Burkholderia
           oklahomensis C6786]
          Length = 311

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 134/311 (43%), Gaps = 45/311 (14%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA  G+FT AAE LH+SQ ++S+QI  LE  +G++LF R AR + LTE G+   
Sbjct: 6   LRYFLAVAERGNFTRAAESLHVSQPTLSQQIRQLEDALGVQLFDRSARTVRLTEFGAAYA 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATT-----------IDLGQNLLQGNLKEFL 116
           R       +LE  +  + +     SG LR+A T           ID G N    NLK  +
Sbjct: 66  RHARAALQQLEAGRRAVHDVENLQSGSLRLAMTPTFSAYLIGWLID-GFNARYPNLKLTI 124

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQR-------KLVTIHMHAYA 169
              P  QI+ +L + ++D+ + +         P QS  +           LV    H YA
Sbjct: 125 REMPQEQIEPLLADDELDVGIAF--------DPTQSPEIEATPLWIETLALVVGRAHRYA 176

Query: 170 APHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQV 225
                   R+PLS  E     LI    L+ +    F   + VD    R    PR+  ++V
Sbjct: 177 ------RRRKPLSPDEAGDEPLI----LLSRA---FATRSKVDQYFHRNGVTPRV-AIEV 222

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           NS  ++++    G    +LP  I     +L  I  +   P  T      +    +  ++A
Sbjct: 223 NSISAMLEMVRGGRIATVLPSAIAARRDDLCAIRLEPPLPRRTAALLTRKGGYRSAAMRA 282

Query: 286 FRNFIFLKARD 296
           F ++   + R+
Sbjct: 283 FIDYALARRRE 293


>gi|162455244|ref|YP_001617610.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161165826|emb|CAN97131.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 312

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 133/297 (44%), Gaps = 9/297 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  VA    F  AA +L +S  +++R IS LE  +G +L +R  R + LTE G++
Sbjct: 17  DAMRVFVAVAEEEGFAPAARRLSMSPPAVTRAISALEERIGTRLLHRTTRVVRLTEAGAR 76

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++E  +     S     G++ +   +  G+  +   L +FL L+P +   
Sbjct: 77  YLADCKRILGEIEEAEASAAGSHTALRGQIGVTAPVLFGRMFVAPALFDFLALHPRVSAW 136

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L ++ +D+  +  D A+R+   +  SSL   ++ ++     A+  YL    EP +  +
Sbjct: 137 TLLVDRVVDMVDEGLDVAVRIAH-LPDSSLSAIRVGSVRRVVCASAEYLAARGEPEAPAD 195

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+ I F          F   + V+R       S L  N+    +   V G G+A + 
Sbjct: 196 LARHDTIAFSWTGSPVEWSFGSGSRVERVSPS---SQLLANTADVAIAAAVAGRGLARVL 252

Query: 246 DYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDW 297
            Y +       R   ++     P   ++  +PE  +   +++AF +F+   L++  W
Sbjct: 253 SYQIDPELRAGRLSIVLAAHEPPPVPIHVVHPEGRRAAVRVRAFVDFLVDRLRSEAW 309


>gi|116694124|ref|YP_728335.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528623|emb|CAJ94970.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 326

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 130/294 (44%), Gaps = 12/294 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+    F  V   G+FT AAEQL   +S +S  ++ LET +G KL  R  R + LT+
Sbjct: 4   TIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  ++R  + ++ +L   + E      +  G LRIAT  + G   L G +   L  +P 
Sbjct: 64  AGKAVYRDVAPLFARLREIRQETLAREERVQGVLRIATPYEFGAQQLGGVICRTLAAHPA 123

Query: 122 IQIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + + + +    +D   D  D A + +   +  S  + R++  +    +AAP    +    
Sbjct: 124 LDVAVEITQGLVDPIRDGFDVAFVVVDTDLPDSGTVARRIYHVERGLFAAPALAASLPAQ 183

Query: 181 LSIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  ++L +   L T GD + +   D     TV  PI  PR   +Q ++    +Q  + G 
Sbjct: 184 LRPEDLANMPTLTTPGDTVWEFTRDGQ---TVSVPI-RPR---MQTHNAELRLQGALAGL 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L     +       LVR++ D   P   V+   P+      K++AF   I
Sbjct: 237 GIARLSVIYCEAEIAQGRLVRVLPDYPLPPLRVFALLPDRRLQPRKVRAFMEAI 290


>gi|103487832|ref|YP_617393.1| LysR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98977909|gb|ABF54060.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis
           RB2256]
          Length = 296

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 129/286 (45%), Gaps = 12/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA  G F  AA +L  S  +++R I+ LE  +G  LF+R  R + LT+ G+   
Sbjct: 7   LEMFVAVASEGGFAAAARKLGSSPPAVTRGIAALEARLGTALFHRSTRAVALTDAGAAFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L   +  L+ ++  PSG+L +   +  G+  +   +   +  + ++ ++++
Sbjct: 67  GEARRILADLAGAERALRGAAAAPSGQLHLTAPVMFGRLHVLPVVDAMMTKHRELGVRMM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++++ I  +  D A+R+   +  S L   ++  +     A+P YL     P  I +L 
Sbjct: 127 LIDRNVRIVEEGIDVAVRI-GALADSGLKAVRIGRVRQMLVASPAYLARRGAPHGIADLK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+LI  G + P+   ++ +     R    PR   L VN+    +     G GIA L  Y
Sbjct: 186 GHDLI--GTMGPRWTSEWQFARERWRLPAPPR---LTVNTVDGALAAAEAGLGIANLLSY 240

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +    D   L+ ++E    P+  V+  +     +   L A R F+
Sbjct: 241 QLAEAIDAGRLIALLEQEQPPALPVHLLFE---PSRAALPAVRLFV 283


>gi|76819569|ref|YP_336844.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|76584042|gb|ABA53516.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b]
          Length = 453

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 130/298 (43%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 149 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 208

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 209 NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 264

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 265 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYARRHAV 323

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L   + I  G L       ++     +R +       L+V S L   Q  + G+
Sbjct: 324 PRHPDDLPGSHWIGHGGL---ANLSYSVFGNEERSVRIQTPGRLKVKSVLLAHQMALAGA 380

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 381 GISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 433


>gi|283833523|ref|ZP_06353264.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291071191|gb|EFE09300.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 298

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 15/291 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  VA +GSF  AA++L ++ S++S  +S LE  +G++L  R  R    TE+G+ L
Sbjct: 8   QLIVFITVAEAGSFRAAADRLGIAPSAVSHAVSALEASMGLRLLARTTRSTRPTEEGANL 67

Query: 67  -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             RVT  +  +++     + E +  PSG LR+   +   + ++   L  F   YP I++ 
Sbjct: 68  LSRVTGPLA-EIKAGFSGVMEGAQAPSGPLRVTMPLLAAETIILPRLAAFSARYPAIELD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +   DI     D  +RL + +++  +  R           AP Y     +P   ++
Sbjct: 127 IRASDIFEDIVESGCDAGLRLGENLEADMIAVRADTPRRSVIVGAPSYFAGNPKPAHPRD 186

Query: 186 LDKHNLITFGDLIPKCMED---FNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  HN I       +  E    + W LA   R I       L +     I Q  + G G+
Sbjct: 187 LAGHNCIR------RRFESGRVYRWELAHDGRAITVDVRGNLILPHQEHIRQAALAGVGL 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           A L +  V+++     LV +ME+        Y  YP   +    L+AF +F
Sbjct: 241 AFLFEDRVREDLREGRLVTVMEEWCPWFDGFYIYYPSRRQMRPALRAFIDF 291


>gi|254469617|ref|ZP_05083022.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211961452|gb|EEA96647.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 292

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 133/289 (46%), Gaps = 16/289 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR GSFT AA +L ++Q+++S Q+  LE  +G  LF R  +GL LT++G+ 
Sbjct: 9   NALRAFEVAARQGSFTRAAIELRVTQAAVSHQLIALEELLGTTLFLRTPKGLVLTDEGTA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           LH V ++ + ++ +      +   + +  L + TT   G   L   L +F   +P + ++
Sbjct: 69  LHPVLTQSFDRIGSVLDRFLDGRYQETLNLGVVTTFATG--YLIERLPDFQAKHPGVNLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N  +DI+ +  D AIR  + +    L    L+T  +    +P   ++ + P   Q+
Sbjct: 127 LFTNNNRVDIAKEGLDIAIRFGEGLW-PGLHAAPLLTTPLTPLCSPEIAQSLKNP---QD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L        +  E   W      P   P+I     +S +++      G GIALLP
Sbjct: 183 LADQPLFRSY----RSDEWELWFQQAAAPC--PKIEGPVFDSSVAMADMVEAGLGIALLP 236

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            ++         L+R     IT +   +  + ++   T  L  F+N++ 
Sbjct: 237 YHMFARRLATGRLIRPFPTQIT-TGKYWLTHLKSKPATPALTLFKNWLL 284


>gi|238789240|ref|ZP_04633028.1| Transcriptional regulatory protein [Yersinia frederiksenii ATCC
           33641]
 gi|238722772|gb|EEQ14424.1| Transcriptional regulatory protein [Yersinia frederiksenii ATCC
           33641]
          Length = 309

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 127/287 (44%), Gaps = 6/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  T+ G
Sbjct: 16  NFNDLISFLVVARERSFTKAAAKLGVSQSALSHSIRGLEERLELRLLTRTTRSVAPTQAG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL       + ++E     L E   +P+G +RI        ++L   L+ FL  Y DI 
Sbjct: 76  EKLANSLGPRFAEIENELDALSEMRDRPAGNIRITAGEHAVDSVLWPVLRSFLTEYADIN 135

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  IRL + +    +  R    + M   ++P YL     P   
Sbjct: 136 VEITVDNTLTDIVAGRFDAGIRLGEQVAKDMVAVRIGPDMSMAVVSSPSYLAKYGIPTIP 195

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  H  I     +P     + W    +    + R+   L  NS    +    +G G+ 
Sbjct: 196 ADLQNHRCINM--RLPTMGGLYAWEFEKEGCQLKVRVDGQLTFNSLRQRIDAATIGFGLT 253

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P+  V+    + +LVR++ +   P    Y  YP   ++T     F
Sbjct: 254 FVPEDSVRAEIASGSLVRVLTEWCEPFPGYYLYYPSRRQHTTAFSLF 300


>gi|307943172|ref|ZP_07658517.1| HTH-type transcriptional activator AmpR [Roseibium sp. TrichSKD4]
 gi|307773968|gb|EFO33184.1| HTH-type transcriptional activator AmpR [Roseibium sp. TrichSKD4]
          Length = 287

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 113/242 (46%), Gaps = 27/242 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A+ G  + AAE+L +S S++S  +  LE E+G  L  R  RGL+LTE+G +L 
Sbjct: 7   LHAFSLLAKLGRASLAAERLGVSPSALSHLMRKLEDELGATLILRDGRGLSLTEEGQRLA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGK--LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               + +      QIE    + K  G+  LRI+T        L   L EF  L PD++I 
Sbjct: 67  LGLGDSF-----DQIEEAVDTFKRRGRTELRISTVSTFATRWLIPKLPEFQALQPDVEIL 121

Query: 126 LILDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKN--CRE 179
           L    + +D+  +  DCAIRL K     + SS L Q      H+    AP  L +    +
Sbjct: 122 LSASTRAVDLDRENYDCAIRLGKGNWQGVDSSLLWQE-----HLAVALAPSLLGSQPTAD 176

Query: 180 PLSIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P  I++L   H+    GD +        WLA VD   GE     +  +  L+I Q  + G
Sbjct: 177 PSRIKDLRLLHSASRRGDWM-------QWLAHVDLEHGEASAGMVLESRDLAI-QAAIAG 228

Query: 239 SG 240
            G
Sbjct: 229 MG 230


>gi|269854705|gb|ACZ51377.1| putative LysR family transcriptional regulator [Pseudomonas sp.
           NyZ402]
          Length = 312

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 137/308 (44%), Gaps = 33/308 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A +G+F +AA Q+ +++S I+ ++  LE  +G+ LF+R +R + L+E G+  +
Sbjct: 7   IEAFVRAAEAGNFANAARQIGVAKSVITTRVQQLEEHLGVSLFHRSSRAVKLSEVGASYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++      +++    SG LR+A         L   ++ F   +P +Q+ + 
Sbjct: 67  TDCQALIDQMQALSQRSRDTCASVSGTLRVAALNGFALEHLPKVIETFRKSHPGVQLDVF 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D   +  D  +++  P  S SLI+R+L  +     A P YL+            
Sbjct: 127 ANDQVVDPVQEGYDIVLQIFPPA-SDSLIERRLFLMRGVFVATPDYLEG----------- 174

Query: 188 KHNLITFGDLIPKCMEDF---------NWLATVDRPIGEPRIS---CLQVNSYLSIMQYC 235
           K  + T  DL   C+ DF          W         +  ++    L+ NS   I ++ 
Sbjct: 175 KPPIETPDDL---CLHDFACYRYYPWRRWSLNNQEHKQQSEVTLTPALRSNSVHLIQEFA 231

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-- 290
             G GIA LP  +  ++     LVR++ D  T +      YP + + T K+K F + +  
Sbjct: 232 RRGMGIAYLPTMVACEDLLQGRLVRVLPDYQTDTPYFSAVYPTSHRLTAKVKLFLDLLSS 291

Query: 291 -FLKARDW 297
            F    +W
Sbjct: 292 TFAMEPEW 299


>gi|171911231|ref|ZP_02926701.1| transcriptional regulator, LysR family protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 307

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 125/292 (42%), Gaps = 42/292 (14%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LR F  +   GS +  A +L ++Q ++SRQ+  LE   G+ L  R    ++LTE G
Sbjct: 6   DLSLLRAFISIVECGSISAGARRLRITQPTLSRQLKTLEERCGMALLRRDTHQMSLTEAG 65

Query: 64  SKLHRVTSE---VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
              HRV ++   +  ++E     L+ES    SG LR+  TID GQ      + +FLL +P
Sbjct: 66  ---HRVLADGHALLAQVEAADKRLRESHTTLSGHLRLFATIDFGQFGATRMISQFLLAHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   L L N+ + +  + AD  + L   +   S+I R++    +    AP  +K  R+P
Sbjct: 123 KVSASLALTNRPLHMIQEGADVGV-LPGKVTDDSVIARRVGAFSLILAVAPALVK--RQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS------------- 227
            + +              P  +  + W+A         R   L+  S             
Sbjct: 180 PAKK--------------PDDLTSWPWIALAGAQFWNARELALRGRSGKTHTLRIDPVFT 225

Query: 228 ---YLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
                S  +  + G G+ +LP ++++ +    NL++++ D       V+  Y
Sbjct: 226 SEGVTSCREAALAGVGLTVLPRWMIEGDLREGNLLQVLPDWNPGDLPVHVIY 277


>gi|94500318|ref|ZP_01306851.1| transcriptional regulator, LysR family protein [Oceanobacter sp.
           RED65]
 gi|94427617|gb|EAT12594.1| transcriptional regulator, LysR family protein [Oceanobacter sp.
           RED65]
          Length = 307

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 49/264 (18%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            R+   +A++ + T AA+QLHL+QS++S Q+  LE  +G +LFYRH +   +T  G ++ 
Sbjct: 13  FRLVDALAQTNNMTLAAKQLHLTQSALSHQLKALEEALGYELFYRHGKKFVITPHGRRVL 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL- 126
                V  +L + Q ELQ         LRIAT        L   +  F   YP+++++L 
Sbjct: 73  ESAKVVLSELTSLQDELQAIEQDDKVVLRIATECITTFQWLPRAIPVFKQAYPNVEVELL 132

Query: 127 ---------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI--HMHAYAAPHYLK 175
                    +LD+ DID+++  A      +KP  + SL   +LV +    H  A+     
Sbjct: 133 PNAYNKVTDLLDSGDIDMAIKMAPA----KKPFINHSLFDDQLVVVLDKNHKLAS----- 183

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCME----------DFNWLATVDRPIGEPRISCLQV 225
             ++ ++ +++ + N++    L P   E          D + + T + P+ E        
Sbjct: 184 --QDIITAEDVARENIL----LCPNAKEKLFRGLSLHVDISKIKTTEFPLTE-------- 229

Query: 226 NSYLSIMQYCVLGSGIALLPDYIV 249
               +I ++C  G GI++L D+ V
Sbjct: 230 ----AITEWCYAGMGISVLADWSV 249


>gi|89092210|ref|ZP_01165164.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
 gi|89083298|gb|EAR62516.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
          Length = 301

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 131/286 (45%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  +   GS + AAE+L +SQSS++R ++ LE  V  +L +R  R LTLTE+G +  
Sbjct: 7   MAIFVKIVDQGSLSKAAEKLGMSQSSVARSLAALEESVATQLIHRTTRKLTLTEEGIEFS 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E  +  L +   KP G +RI      G+  +   + EF+  YP+I+++L+
Sbjct: 67  LRCRQILADVEDAENALTQRQSKPKGLIRITAPQTFGRLHINPLISEFIHTYPEIEVELL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A+R+   +  S+LI +++  +     A+P Y+K   +     EL 
Sbjct: 127 LLDRVVDLIEEGMDIALRIGH-LPDSTLIAKQVGKVAFKVCASPSYIKQAGQAEHPTELF 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            +  I    L       F       +     R    + N   S +  C  G G      Y
Sbjct: 186 DYECIQLTALKSHAQWGFKEAGKHHKISISGR---FKTNHVESALDACKQGLGYGQFLSY 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V +   +  L  ++E    P   V   YP + + + + + F ++I
Sbjct: 243 QVAESVHSGELKTVLESYEPPPLPVNLVYPHSRRLSSRSRTFIDWI 288


>gi|330817135|ref|YP_004360840.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327369528|gb|AEA60884.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 322

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 131/289 (45%), Gaps = 19/289 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   A   + + A  +  +S +  S +++ LE ++G +L +R  R +TLT+ G      
Sbjct: 23  LFVRAALLANVSAAGREFGVSATVASSRLAQLERQLGARLLHRTTRRVTLTQDGELFLAR 82

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +    ++ +  +  +  +P G+LRI+ +   G+  +   +  FL  YP + I L L 
Sbjct: 83  AQTLLDAADSARAAVGRARGEPHGRLRISMSSSFGRQHVAPVIPAFLRRYPQVSIDLRLS 142

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIRL   ++ SSL+ R+L        A+P YL     P    +L +H
Sbjct: 143 DEIVDLVDEGIDLAIRL-GALRDSSLVARRLAVNRRVVCASPAYLAEHGTPHHPADLARH 201

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPD 246
             +  GD         +W    + P G   +     L  ++  +I +  V G GIA+   
Sbjct: 202 ECVVLGD-------QRDW--AFETPAGPLTVRVGGRLVASNGEAIREALVDGFGIAIKST 252

Query: 247 YIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V  N    +LV ++ D  +  PS  ++  YP       KL AF +FI
Sbjct: 253 WDVGPNLRDGSLVPVLADYPLAEPS-AIWAVYPSRAFVPLKLTAFIDFI 300


>gi|311107282|ref|YP_003980135.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761971|gb|ADP17420.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           134 [Achromobacter xylosoxidans A8]
          Length = 311

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 127/288 (44%), Gaps = 15/288 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VAR+ SF+  A +  +  SS++RQI  LE+E+ + LF R  R L  TE G  
Sbjct: 8   ESLSIFVDVARAQSFSEVARRRGMVASSVARQIGALESELKVPLFVRSTRALMPTEAGEV 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    ++ H +   + E+        G LR++      +  +   L++    +P +Q++
Sbjct: 68  LYERAVKILHDMTEARSEVISLEQTVQGLLRVSCLPAFARRYVVPMLQQLGERHPQLQVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY---AAPHYLKNCREPLS 182
           L L  + +D  ++  D  +R+ +   SS + QR    I  H Y   AAP YL+    P +
Sbjct: 128 LELTERVVDPVVERMDVVVRVGQQPDSSLIGQR----IGSHRYLICAAPSYLERHGVPRT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +H LI              W    D    +     L+ +   +     + G GIA
Sbjct: 184 LADLSRHRLIDRR----HSTSVRGWRELGDGQWAQDARFVLECDDCDARRFAALEGLGIA 239

Query: 243 LLPDYIVKDNPNLVRI----MEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L+P++    +    R+    +ED   P  +  +      +   +++AF
Sbjct: 240 LMPNWSAGADIGAGRLVQLTLEDASPPPESGIYLLRAMPRANARIRAF 287


>gi|307944793|ref|ZP_07660131.1| transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307772007|gb|EFO31230.1| transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 307

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 130/295 (44%), Gaps = 16/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS- 64
           D L  F   AR GSFT AA++LHL+Q +IS+Q+  LE  +G++LF R  + + LT+ G  
Sbjct: 10  DTLIAFECAARHGSFTRAAKELHLTQGAISKQVRQLEDRLGVELFRRVRQRIVLTDAGRI 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH +   +      T+  +  S       L +A     G   L   L  FL +YP   +
Sbjct: 70  YLHDIRGAMESLTSATRQVM--SYAGSEDVLNLAVLPTFGTRWLAPRLSGFLKVYPKAGL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCREPLS 182
            L +  +  D + +  D AI    P+ + + I   L    +   A+P +    N  EP  
Sbjct: 128 NLSVRLQPFDFANESFDGAIHHGDPVWAGA-IAEPLFPEDVIPVASPVFRDRHNISEPTD 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  + +  L T     P     +  +A V   +        +   ++ I +  +   G A
Sbjct: 187 LTRVPRLQLAT----RPLAWRQWFDVAGVQTDVA---FQGARFEQFVMISEAAIHHLGAA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+P + ++D      LV++ +  ++ +   +F YPE       +KAFR ++  +A
Sbjct: 240 LMPSFFIRDELAAGRLVQLFDVSLSQATAYHFVYPENRTLRPVVKAFRTWLLDEA 294


>gi|260598250|ref|YP_003210821.1| HTH-type transcriptional regulator YhjC [Cronobacter turicensis
           z3032]
 gi|260217427|emb|CBA31521.1| Uncharacterized HTH-type transcriptional regulator yhjC
           [Cronobacter turicensis z3032]
          Length = 301

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 97/193 (50%), Gaps = 3/193 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L +F  VA   SFT AAE L + +   S  +  LE E+G  L  R  R + LTE+G
Sbjct: 3   NLEPLMIFARVAEMKSFTQAAESLGIQKGRASVVVRELEQEIGATLLNRTTRTVQLTEEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++  + +  +    +S     G+LR+     L +N++   L + L  +P+++
Sbjct: 63  RAFYTRARDLLAEADELKSMFSQSETALRGRLRVDMPAVLAENVVIPALPQLLDAHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  P+   +L+ R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLIQEGFDCVIRL-GPVVDETLVARPLGKLRMVNAASPDYLARVGVPQTL 181

Query: 184 QELDK--HNLITF 194
           ++L +  H ++ +
Sbjct: 182 EDLTRQGHRMVHY 194


>gi|270156590|ref|ZP_06185247.1| LysR family transcriptional regulator [Legionella longbeachae
           D-4968]
 gi|289164951|ref|YP_003455089.1| transcriptional regulator, LysR family [Legionella longbeachae
           NSW150]
 gi|269988615|gb|EEZ94869.1| LysR family transcriptional regulator [Legionella longbeachae
           D-4968]
 gi|288858124|emb|CBJ11990.1| putative transcriptional regulator, LysR family [Legionella
           longbeachae NSW150]
          Length = 299

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V  S SF  AA  L +S +S++R+I+ LE  +G+ L  R+ R  +LT  G   
Sbjct: 4   EIQVFIQVVDSNSFYKAANVLKMSPASVTRKIARLEASLGVTLLNRNTRRFSLTSYGEYC 63

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +   +      + +    P G L ++     G   L   + EF+  +P I+I  
Sbjct: 64  YQHCQMISGLVSELHQSIADKIKSPKGTLHLSIAAYSGYMELIPIISEFIKKFPLIKINY 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              N   D   D  D   R  K I + +L  +KL+   +   A+PHYL++   P    +L
Sbjct: 124 FKSNIYPDFIEDTFDFYFRY-KEIHTRTLQSQKLIEHQLICCASPHYLQHHGMPEHPHDL 182

Query: 187 DKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             HN I    +L    + DF+     ++ I       L+VN+    ++  + G GIA LP
Sbjct: 183 IDHNCIIHQINLYEGEIWDFD---DNNQLISVTASGNLRVNNSALALEAVMEGIGIARLP 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y  +   DN  LV ++ +   P  TV+  +P     +   K F  ++
Sbjct: 240 QYFFQNHLDNGELVEVLVNYRCPPLTVWLIHPRNQYMSYHHKIFMEYL 287


>gi|258622589|ref|ZP_05717611.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258585289|gb|EEW10016.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 312

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P+   +
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPIHPTD 189

Query: 186 LDKHNLITFGD 196
           L +H+ +   +
Sbjct: 190 LAEHDCLYLAE 200


>gi|91223225|ref|ZP_01258491.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91192038|gb|EAS78301.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 309

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 139/297 (46%), Gaps = 26/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   +EL  E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 73  DQSIAMVNAAQQA-VELSAEDHAEPTGALTVAAPEAFLNSVLQPFVLPFLERYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + +ID+     D A +L  KP    +L+ +++   ++   A+P YL     P    E
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDKP--DENLVLKEISKTNLVLCASPDYLAKHGMPEHPTE 189

Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L++H+ I   +     +      E F+ +A   R           VN     +     G 
Sbjct: 190 LEQHDCIYLAENDKDNIWSFFKEEAFHSIAVSGR---------YAVNHSQMRLNGVKSGL 240

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  D+++KD      +V ++ D +  S     +   Y +      +L+ F +F+
Sbjct: 241 GIGIFHDFVIKDALEQGEVVEVLSDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFV 297


>gi|126175236|ref|YP_001051385.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125998441|gb|ABN62516.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 313

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGHL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++Q
Sbjct: 66  LYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGVMHIIPALPSFMAKHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLVASPGYIAQHGEPTRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  L
Sbjct: 185 LVDHNCLVYQG---EWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVYL 241

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV +++D  +T    +   YP       K+ +F  FI
Sbjct: 242 ASYLMEDEITKGTLVPLLKDWQLTHHLPLQAVYPRRKHLAPKVSSFIEFI 291


>gi|134291666|ref|YP_001115435.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134855|gb|ABO59180.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 284

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 11/243 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  +R+F  +AR G+   AA  L LS  +I R++  LET +G  LF R A G  LTE+
Sbjct: 1   MEWSDVRIFLAIARMGTLGAAARALALSHPTIGRRLRALETSMGQVLFQRTADGFVLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +  +  ++     T +  L     K  G L+I+++   G  +L   + E+   YP +
Sbjct: 61  GVAILPLAEQMEESALTMERRLTGEQQKLEGTLKISSSDWFGAYVLPPVIAEYSRDYPLV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I ++   +  +++   AD A R+  P     ++QR+L  +    Y A  +     +P+ 
Sbjct: 121 EIDVLTGTRLFNLAQREADVAFRI-VPFTGQDIVQRRLTRMRYGVYVAAAHA----DPVE 175

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +   H LI   D       D +WL       G      LQ N+     Q C  G GIA
Sbjct: 176 -GDGAGHRLIAM-DTSTGSFPDIDWLKARFPNAG----VVLQSNNRNVQAQMCGRGLGIA 229

Query: 243 LLP 245
           +LP
Sbjct: 230 VLP 232


>gi|319779832|ref|YP_004139308.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317165720|gb|ADV09258.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 294

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 132/297 (44%), Gaps = 21/297 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F       +FT AA +L++++ ++S Q+  LE+ +G KLF R  RG+ LTE G + H
Sbjct: 9   LVAFEAAGSHMNFTAAAHELNVTREAVSMQVRLLESRLGAKLFERGQRGVALTEYGRQFH 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              SE    L     E  E        + ++TT+  G   L   L +F +  P I I+L+
Sbjct: 69  NTVSE---SLWLISREFNEKVADIPANVTVSTTVAFGSCWLMPRLADFRIRNPGINIKLV 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+S    D +IR  +    + L   K+ +       +P Y+ +    +  + L 
Sbjct: 126 ETDECLDMSKFGIDISIRYGRG-DWNKLKSEKVFSEEFFPICSPGYVNS----VGAENLR 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ------VNSYLSIMQYCVLGSGI 241
           K   +T   L  +  E  NW    D+ +   +++ L+        +Y ++++  + G G+
Sbjct: 181 KFQNVTLLHLDGRAHEWENW----DKWLEFAKLTSLRPQQGIWFQNYDNLLRATLEGQGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           AL    +V++   N +LVR  +   T     Y     A       K FRN+I  K R
Sbjct: 237 ALGWTRLVEEKLSNGSLVRPFDLAFTTGNGYYIVEAPANAPNRASKIFRNWIRDKMR 293


>gi|254264503|ref|ZP_04955368.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254299612|ref|ZP_04967061.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157809507|gb|EDO86677.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254215505|gb|EET04890.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 448

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 130/298 (43%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 144 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 203

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 204 NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 259

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 260 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYARRHAV 318

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L   + I  G L       ++     +R +       L+V S L   Q  + G+
Sbjct: 319 PRHPDDLPGSHWIGHGGL---ANLSYSVFGNEERSVRIQTPGRLKVKSVLLAHQMALAGA 375

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 376 GISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 428


>gi|148546158|ref|YP_001266260.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148510216|gb|ABQ77076.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 326

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 136/285 (47%), Gaps = 29/285 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F VV  +GSF  A+ +L ++ S++S+Q+S LE  + I+L  R  R L +  +G++++
Sbjct: 18  MAAFAVVVETGSFVDASARLGVTASAVSKQVSKLENALSIRLLERSTRQLKVNAEGAQVY 77

Query: 68  RVTSEVYHKLETTQ--IELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               E+   LE++      ++  ++ P G +R+A    L   +    + EFL  YP + +
Sbjct: 78  SHCKEL---LESSANIFRFKDRFLESPQGLIRVAVPRSL-YVICHQLVPEFLERYPSVNV 133

Query: 125 QLILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QLI +  + D   +  D  IR+    P+    L+ RKL  +     A+  YL+    P+ 
Sbjct: 134 QLISNEGEFDFIAEGIDVGIRVTDSPPL---GLVARKLFPVDFVVCASNSYLEKHGRPVH 190

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             EL +H+ I F ++     E  NW  T  + + E  +S   V +S  +++   + G GI
Sbjct: 191 PSELTEHSCIPFSEV----SEKQNWKFTSAQGVCEVSVSGRYVSDSPEAVLNATLSGLGI 246

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + LP          VR+  + IT +  V   +PE  K  G L+  
Sbjct: 247 SCLP----------VRLAAEAITTNVLVEV-FPE-WKYVGTLQGM 279


>gi|134291998|ref|YP_001115767.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135187|gb|ABO59512.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 296

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 123/291 (42%), Gaps = 12/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 13  LLVFEAAARHESYTRAADELSLSQSAISRQVQTLEAQLGVALFRREGRSVKLTEVGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L  F   +P + + L 
Sbjct: 73  AEVSGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHGFYAAHPGVTVHLH 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                ID   D  D AI +        L   +L    + A A+P      R     +   
Sbjct: 132 SRIGAIDFHTDDVDAAITVGTG-DWPGLHAHRLSNEFLIAIASP--AAAGRRNAKARAPA 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
                T   +         W A       + R+    ++ S+L  +Q    G GI L+P 
Sbjct: 189 SAAGQTLLGVTSNQHAWAEWFAHFGLDHRDMRVGPSFELTSHL--IQAVRAGIGIGLVPK 246

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +V+D      LV I  D IT   + Y  YP   +    L AFR ++ LKA
Sbjct: 247 VLVEDELTRHELVPI-GDAITSRRSYYLVYPPENETLPSLAAFREWL-LKA 295


>gi|77458668|ref|YP_348174.1| DNA-binding transcriptional activator GcvA [Pseudomonas fluorescens
           Pf0-1]
 gi|77382671|gb|ABA74184.1| positive regulator of gcv operon, LysR family [Pseudomonas
           fluorescens Pf0-1]
          Length = 300

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 126/289 (43%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AAE+L+++Q++IS QI  LE E+G++LF R   GL LTE+G+ 
Sbjct: 9   NGLRAFECAARHMSFTRAAEELNVTQTAISHQIRRLEDELGVRLFMRLKDGLALTEEGNA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + +L  +  +L ESS   +  L I+T + +    L   L  F   +PDI ++
Sbjct: 69  YLPGIRSAFLELRYSTEKLLESSH--NSVLTISTLVSVASKWLLPRLPSFREAHPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    + +D      D AIR         L    L+   +    +P  L   +   +  +
Sbjct: 127 ISASTEWVDFRKGGIDAAIRYGDG-NWPGLRADWLMADEIFPVCSPRLLTGDKPLNTPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H L+    +      D+N WL    +P    +   L  +  +  +Q  + G G+ + 
Sbjct: 186 LAHHPLLQVSGV---TANDWNDWLHAAGQPPLTAKGPRLTFDLAMMAVQAAIDGQGVCIG 242

Query: 245 PDYIVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               V D+    R++      +  +   Y   P     + K+ AFR ++
Sbjct: 243 RSTYVDDDLRAGRLVAPFDLRLKSASGFYLVTPHDQAESKKIVAFRGWL 291


>gi|26988420|ref|NP_743845.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24983177|gb|AAN67309.1|AE016357_2 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 309

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 132/296 (44%), Gaps = 14/296 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V  +GS    A  L LS +++S+ ++ LE  + ++L  R  R + LT  G++
Sbjct: 5   NAIRCFIKVVEAGSIAAGARILGLSPAAVSQNLARLEGHLQVRLLSRTTRSMALTPSGAQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   L   +  +     +P G+L IA+T   G+++L   +  F   YP + I+
Sbjct: 65  YYERVKHIERDLALAEQAVTTPDSEPQGRLCIASTSAFGRHVLAPLIPAFSARYPLLSIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+  ++ ++ + +  D ++R+  P     L+ R++  I     A+P YL++   P + + 
Sbjct: 125 LVTTDRRVNHAREDVDVSLRI-APQLEDQLLARRIARIPFICCASPGYLQSAGVPATPEA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALL 244
           L  H  + F    P       W    D    E     + ++  + ++ Q  +   GI  L
Sbjct: 184 LRGHRCLVF--RYPVDGRFLRWGFMRDGLRFEAEFGTVLISDDIDALTQMALHDGGITRL 241

Query: 245 PDYIVKD---NPNLVRIME-------DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++IV+    +  LV + E          T    +Y C  +    T K++AF +++
Sbjct: 242 AEFIVRPHLASGALVPLFEYCDSSQAYAQTEPMDIYLCLADRFAMTTKVRAFMDYL 297


>gi|293605216|ref|ZP_06687604.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292816401|gb|EFF75494.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 317

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 82/141 (58%), Gaps = 10/141 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR F  +ARSGS + A+  L ++Q ++S+ ++ LE E+G+ LF RHA+G+TLT +G +L
Sbjct: 5   QLRYFLEIARSGSLSLASSTLRIAQPALSQHVAVLENELGVTLFERHAKGVTLTAEGKRL 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI---- 122
            +  + +  +LE+ + ++  S+ KP G +R+     L Q +    ++     YPDI    
Sbjct: 65  QQRAASILDQLESLKTDVLGSTGKPRGPVRVCLARSLAQVVAAPLIRYVEQEYPDIRLLL 124

Query: 123 ------QIQLILDNKDIDISM 137
                 Q++  L+ + +D+++
Sbjct: 125 SSALSSQVRAALETRQLDVAL 145


>gi|145301009|ref|YP_001143850.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853781|gb|ABO92102.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 295

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 98/200 (49%), Gaps = 3/200 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VAR+GSF+  AE+  ++ + I + I  LE  VG +L  R+ R  +LTE G +  
Sbjct: 7   IEIFVEVARAGSFSAVAERFEMTPAMIGKYIKWLEARVGSRLLNRNTRRQSLTEAGREYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +       +   +  + + +GK+RI   I  G   L   L  F+  YP I+I+L 
Sbjct: 67  GGCQNLLQHYRELEQNTRAHTGQAAGKIRINAPITFGSYRLTPLLCRFMAQYPQIRIELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  D  D   R+  P + ++ I R L +      A+P YL+    P+++ +L 
Sbjct: 127 LCDRLVDVIGDGFDLIFRVGTP-KDAAYIARPLTSSTSVFCASPRYLQRHGTPMALADLA 185

Query: 188 KHNLITFGDLIPKC--MEDF 205
           +H  + F   + +    EDF
Sbjct: 186 RHQCLGFTPWLTQSSLAEDF 205


>gi|153001561|ref|YP_001367242.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|160876297|ref|YP_001555613.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|217972510|ref|YP_002357261.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|304410079|ref|ZP_07391698.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307302209|ref|ZP_07581967.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|151366179|gb|ABS09179.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
 gi|160861819|gb|ABX50353.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|217497645|gb|ACK45838.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
 gi|304351488|gb|EFM15887.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306914247|gb|EFN44668.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|315268486|gb|ADT95339.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 313

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGHL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++Q
Sbjct: 66  LYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGVMHIIPALPSFMAKHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLVASPGYIAQHGEPTRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  L
Sbjct: 185 LVDHNCLVYQG---EWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVYL 241

Query: 245 PDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV +++D  +T    +   YP       K+ +F  FI
Sbjct: 242 ASYLMEDEIAKGTLVPLLKDWQLTHHLPLQAVYPRRKHLAPKVSSFIEFI 291


>gi|78061093|ref|YP_371001.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968978|gb|ABB10357.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 313

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 139/280 (49%), Gaps = 16/280 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AA+QL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDSGSITAAAQQLDLTVSATSRTLGRLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +ET + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRTFLQDARAIIESVETAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  +   ID+     D A R+ + ++ S+L  R++ T  +  +A+P Y+    +P
Sbjct: 121 NVELELNSNEGIIDLLERRTDVAFRIGR-LKDSTLHSRRIGTSRIRIFASPAYVAAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RIS-CLQVNSYLSIMQYCVLG 238
             +++LDKH L+ F    P+ +  +  L       GEP RI   ++ +S  ++ Q  + G
Sbjct: 180 RKVEDLDKHTLLGFTQ--PESLNVWPILGA----DGEPCRIEPGIRSSSGETLRQLALDG 233

Query: 239 SGIALLPDYIVKDNPNLVRIME-------DVITPSFTVYF 271
           +G+  L D++   +    R+++       +V  P   VY+
Sbjct: 234 AGVVCLSDFMTAQDREAGRLVQVLARQTLEVEQPIHAVYY 273


>gi|331016471|gb|EGH96527.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 307

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  ++SR+++ LE ++G++L +R  R ++LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAVSRRLAALENDLGVRLGHRTTRSVSLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E  +  L+  +   SG LR+      GQ ++   L E +L  P + I L 
Sbjct: 66  PHAKTMLQASEAARATLKADAGTASGILRVTAPSVFGQTVIMPLLPELMLENPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL     P  + +L 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLVRRGTPTVLDDLR 184

Query: 188 KHNLITF 194
            H  I  
Sbjct: 185 HHPCIAL 191


>gi|217978084|ref|YP_002362231.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
 gi|217503460|gb|ACK50869.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 302

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 127/282 (45%), Gaps = 22/282 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+++LR F  V    SF+ AAE L +S S++S+ +   E  VG +L  R  R + LT+ G
Sbjct: 9   DYNQLRAFVAVGEFLSFSRAAEALGVSPSALSQTVRAFEERVGARLLNRTTRSVALTDAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L         +L    ++ + S  +P+G +R+ +    G+  L+  L  F   +P++ 
Sbjct: 69  EILLGRVRPAVTELGDALVQTRCSGERPTGLVRVHSFRLAGERYLEPILGRFARDFPEVV 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYLKNC 177
           + + LD+   D+     D AIR+        +I+R ++ + +       A A+P YL+  
Sbjct: 129 LDVTLDDAVEDVVAGRYDIAIRI------GEVIERDMIAVQLGPALRQIAVASPAYLERH 182

Query: 178 REPLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            +P   ++L +H  + +   G   P   E F   A  +  +  P I    VN     +  
Sbjct: 183 GKPEHPRDLLQHRCVRWRWPGRATPYAWEFFENGAWFEVAVDGPLI----VNDKNLAVSA 238

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            +  +GIA   + +V++   +  LV ++E         + CY
Sbjct: 239 ALQAAGIAFAVEDVVREQIGSGALVSLLEPWCADFPGYFLCY 280


>gi|94500942|ref|ZP_01307467.1| putative transcriptional regulator, LysR family protein
           [Oceanobacter sp. RED65]
 gi|94426882|gb|EAT11865.1| putative transcriptional regulator, LysR family protein
           [Oceanobacter sp. RED65]
          Length = 313

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 26/305 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VAR  SF+ AA++L +SQS+IS QI  LET +G +LF+R+ R L+LT++G +  
Sbjct: 9   LPVFEAVARLNSFSLAADELAVSQSAISHQIKQLETYLGEQLFWRNGRTLSLTDEGRQYL 68

Query: 68  RVTSEVYHKLETTQIEL---QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              S    ++E    +L   +ES      +LR++         L   L +   L+P +++
Sbjct: 69  DGISTALLQIERASEQLLGHEES------RLRLSVFSSFAVRWLVPRLPDLQRLHPQVEL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRK--PIQSSSLIQ-RKLVTIHMHAYAAPHYLKNCRE-- 179
            L +  +   +S   ADC I + K  P  S  L+   +L  +    Y      +  RE  
Sbjct: 123 SLEMSIESPVLSDRVADCFITIHKESPAYSYELLYVERLFPVCSQDYWQKMRRELGRESA 182

Query: 180 -----PLSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI-M 232
                PLS  ++ +  L++   +  K   D+  W   VD  I  P+ + +Q  S++ + +
Sbjct: 183 EAETLPLSTDDISQFPLLSTHSIFDKTAGDWQAWYKAVDASI--PKHANVQHFSHMLLAL 240

Query: 233 QYCVLGSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +      GI L  DY++   KD+ + VR+   ++      YF +  + +    L+  R +
Sbjct: 241 EAARFHQGIVLTNDYMLSTTKDSEDFVRLPCHLVMTGDEFYFAWKTSRRKERGLQLLRKW 300

Query: 290 IFLKA 294
           +  +A
Sbjct: 301 LLDEA 305


>gi|90580949|ref|ZP_01236750.1| putative transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
 gi|90437827|gb|EAS63017.1| putative transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
          Length = 306

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 132/299 (44%), Gaps = 23/299 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQG 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  +     ++ E   K  G L I+         L   L +F   +PDI ++
Sbjct: 69  YFLDIKDIFSAISDATDKVLERGAK--GALTISLPPSFAIQWLVPRLTDFNEQHPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   + D     D  D AI   +    S L   KL    M    +P  L   +   ++ +
Sbjct: 127 IKAVDLDEGSLTDDVDVAIYYGRG-NWSGLRADKLYQEFMMPVCSPMLLTGAKPLRTLDD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS------YLSIMQYCVLGS 239
           L  H L+   D   K  E  N++   D       +  + VN          ++Q    G 
Sbjct: 186 LKLHTLLH--DTSRK--EWKNYVRHYD-------VQGVNVNQGPIFSHSTMVLQAAAHGQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIAL  + + +   +   LV   ++V+      YF   E   +TG+++ FR+++  KAR
Sbjct: 235 GIALGNNVLAQPELEAGRLVCPFDEVLVSKNAFYFVCQERQADTGRIQIFRDWVLAKAR 293


>gi|83646092|ref|YP_434527.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634135|gb|ABC30102.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 258

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 99/187 (52%), Gaps = 24/187 (12%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-KLHRVTSEVYHKL 77
           SF+ AA+   +  SSISR+IS LE ++G++L +R  R + LTE G   + +V + V    
Sbjct: 2   SFSRAAKSFGVPASSISRRISDLEADLGVELLHRTTRTVRLTEIGMIYVEQVRAGV---- 57

Query: 78  ETTQIELQESSV-----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
             TQ+++ E  V      PSG LRI+      Q LL+  +  F   YPDI + L  ++  
Sbjct: 58  --TQLDVAEEMVGLHSRTPSGTLRISALPSFSQ-LLRPAVIAFNQRYPDILLDLYFNDAV 114

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAY---AAPHYLKNCREPLSIQELD 187
           +++  D  D AIR      SS L Q +++   IH H Y   A+P YLKN   P ++++L 
Sbjct: 115 VEMGRDRIDIAIR------SSLLTQERVIAHKIHSHKYLLAASPEYLKNHGAPRTLEDLQ 168

Query: 188 KHNLITF 194
            H  + +
Sbjct: 169 DHPALLY 175


>gi|298485370|ref|ZP_07003460.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160068|gb|EFI01099.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 315

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 13/273 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLAVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHIRMGCTEGFGSFFITPQLSHFLDSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +     
Sbjct: 131 ISLDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQAYLDSHTAIE 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVLGS 239
              +L  H  I++ D +    E   +L+ +  P  +      Q+ S   I QY   + G 
Sbjct: 190 QKADLSGHVFISYVDDLAFSSE-LLYLSNL-LPNAQA-----QLRSTSVIAQYTAALQGR 242

Query: 240 GIALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
            +A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 243 ALAILPCFLAAQDPRLLPVLAEEVNITRQFWMY 275


>gi|229096915|ref|ZP_04227884.1| Transcriptional regulator, LysR [Bacillus cereus Rock3-29]
 gi|229115904|ref|ZP_04245301.1| Transcriptional regulator, LysR [Bacillus cereus Rock1-3]
 gi|228667566|gb|EEL23011.1| Transcriptional regulator, LysR [Bacillus cereus Rock1-3]
 gi|228686525|gb|EEL40434.1| Transcriptional regulator, LysR [Bacillus cereus Rock3-29]
          Length = 305

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 136/287 (47%), Gaps = 28/287 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   L  F  LYP
Sbjct: 67  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQYGSLTIGSLLTVVNYLLPPTLLHFNTLYP 126

Query: 121 DIQIQLI----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I++ ++          L   ++DI + +         P+Q   ++   L    +     
Sbjct: 127 NIELSVLGLRTGEIREKLFQNELDIGITFL--------PVQDKEIVSIPLYKSELTLVIP 178

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
             +  +  + +SI+EL  + LI    L+PK       L T  +         L++++  S
Sbjct: 179 IGHPLSELDHVSIKELQNYPLI----LLPKNFYLTELLTTYCQNFSFKPKPILEISTMES 234

Query: 231 IMQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           ++Q    G GI +LP    D++  +N   ++I ED  TP+  +   Y
Sbjct: 235 LIQMVSKGMGITVLPKPYIDFLQNENIQAIKI-EDP-TPTIDIGLIY 279


>gi|206563571|ref|YP_002234334.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039611|emb|CAR55579.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 322

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  E
Sbjct: 125 LTLAQRMPNLVKEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTPQTPDE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L  H  +          E   W   ++R  GE  +     +  QVN   ++      G G
Sbjct: 185 LPNHVCLRLDTPASPAGE---W--RLERSDGEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|163800170|ref|ZP_02194071.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
 gi|159175613|gb|EDP60407.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
          Length = 299

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 125/288 (43%), Gaps = 18/288 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE+ +L+ S +S++I+ LE E+  +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSRVAEENNLTNSVVSKRIARLEEEIDAQLLYRTTRRLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  LLHSAKNVKQATQEAMSAVSGFGENVSGHIKMSVPTISGDLILANAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +     +
Sbjct: 124 MSLDNRFVDLVAGGFDLVIR-TGYLEDSSLIARHILDSQWVVCASPSYIVKNGKLTEPTD 182

Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  HN + +        +      D +++  V              ++  ++ +  + G 
Sbjct: 183 LISHNCLQYAYQTTGATDWQFKGKDGDYIVKVS--------GSFSTDNATALRKAALGGH 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           GIA +P  +V  +     LV I  +++     VY  YP   +   K+K
Sbjct: 235 GIAYVPRCLVYHDIRSGELVDIFPELVGKKLGVYAVYPFTRQPPNKVK 282


>gi|152986927|ref|YP_001345657.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150962085|gb|ABR84110.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 310

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 4/184 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ F   A +GSF  AA +L L+ + + + ++ LE+ +G++LF R  R L LTE G + 
Sbjct: 6   NIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLALTEAGERF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        ++T    +     +PSG L+++  +  G++ +   L EFL  YP I    
Sbjct: 66  LQEVGGSLAGIQTALANVSNVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPGIVPDW 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPLSI 183
             DN+ +D+  +  D AI     +    ++ R L   H+   A+P YL++    R P  +
Sbjct: 126 HFDNRQVDLIGEGFDAAIGGGFEL-PPGVVARHLTPGHLILLASPAYLRDKPPIRHPGDL 184

Query: 184 QELD 187
            + D
Sbjct: 185 CDFD 188


>gi|332678582|gb|AEE87711.1| Transcriptional regulator [Francisella cf. novicida Fx1]
          Length = 298

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LET+    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKAIGISPPVVSKQIQILETKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I++    G   L     +F + YP  ++
Sbjct: 64  LLYEKASLILNELEATEEKIFAEDILIDSELKISSPNSFGIKYLCNIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+ +     A+  YLKN   P +I+
Sbjct: 124 NINLSDSYINIIDEDFDLVIRI-GALDDSNLITKKLMPMPSLLCASEQYLKNYGIPKTIK 182

Query: 185 ELDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L+ H  I + +        +E  N    ++      RI     NS   +++ C+ G GI
Sbjct: 183 DLENHLFIQYNNHSSSNRIILESVNKTEIIN---VRQRIVT---NSAEMMLKGCLDGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITP 265
           A LP + + D   +  LV ++ D   P
Sbjct: 237 AKLPLFEIIDKIHDKKLVHLLPDARNP 263


>gi|238782859|ref|ZP_04626888.1| Transcriptional regulator [Yersinia bercovieri ATCC 43970]
 gi|238716282|gb|EEQ08265.1| Transcriptional regulator [Yersinia bercovieri ATCC 43970]
          Length = 305

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 130/279 (46%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEKKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLSHARQIIGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QINLELNTDDLNIDLLEQRTDIAIRI-GTLRDSTIHARLLGASRVRILASPDYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
            SI EL  H+L+ F        E  N  +    P G    I  L  +S  ++    + G 
Sbjct: 180 QSIDELANHSLLGFTQ-----PESLNQWSLPHLPAGRGSIIPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVI----TPSFTVYF 271
           GI  L D++ +++     LV +M D I     P   VY+
Sbjct: 235 GIVELSDFMTREDQLAGRLVEVMADQILETWQPINAVYY 273


>gi|167723769|ref|ZP_02407005.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 290

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 133/290 (45%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  +A   SF+ A++ L + + +++  +  +E  +G +L  R  R + LT+ G 
Sbjct: 4   FQEMQVFVRIAERQSFSRASDDLRIPRVTVTNLMKRMEARLGARLLERTTRTVRLTQDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   LE  +   + ++  P G LR+     L +  +   L +FL  YP I++
Sbjct: 64  AYYRRCVRLIADLEEAEGAFRAAA--PRGLLRVNLQGTLARYFVVPALPDFLARYPGIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP  + 
Sbjct: 122 HIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  H  + +  +     +      TVD  + E R+ + + V          V G GI  
Sbjct: 181 ALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQ 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++
Sbjct: 239 VPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWL 288


>gi|152995507|ref|YP_001340342.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836431|gb|ABR70407.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 287

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 139/290 (47%), Gaps = 24/290 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  + F  +AR G+ T AA+ L +  +++SR+I  LE  +   LF R   G  LT++G 
Sbjct: 6   WDDTKAFLALARFGTLTIAAKSLDMGIATLSRKIERLEHSLQTPLFLRFQTGYQLTDEGK 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            L          +E       +S+ K S   G++++AT  +L  +L+   L  F    P+
Sbjct: 66  NLLNKAE----AMEAAAFTFTKSAKKESQLIGRVKVATAENLATHLIIPALGHFQQTCPN 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I ++ D    ++    AD A+R+ +P   +   QR + T+    Y + HY +N R+  
Sbjct: 122 LHIDIVTDIHTANLHRRDADLALRMVRPTNGNVSFQR-VGTLGYGLYCSTHY-QNERDDA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSG 240
           +       N I +GD     +    W+A+  + +G EP ++   V + +S    C+ G G
Sbjct: 180 N------DNFIQWGDGYEH-LPAARWIAS--QLVGKEPILTTTSVATQVSA---CLAGVG 227

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++V  +  LV  + ++   +  +Y      L  + +++A  +F+
Sbjct: 228 VAILP-HLVARHTELV-CLANIPEINQEIYLVIQTDLTQSKRIRAVADFL 275


>gi|118590353|ref|ZP_01547755.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118436816|gb|EAV43455.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 307

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 20/298 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS- 64
           D L  F   AR  SFT AAE+LHL+Q ++S+Q+  LE  +G++LF R  + + LT+ G  
Sbjct: 10  DTLIAFECAARHLSFTRAAEELHLTQGAVSKQVRQLEDRLGVELFRRVRQRIVLTDAGRI 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH +   +      T+  +  S    +  L +A     G   L   + +F   YPD  +
Sbjct: 70  YLHDIRGALEQMTAATRQVM--SYAGSADVLNLAVLPTFGTRWLAPRIADFGRRYPDAGL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCREP 180
            L +  +  D   +  D AI    P+ + +    L   ++V +    +   H     R P
Sbjct: 128 NLSVRLQPFDFDEEPFDGAIHHGDPVWAGAIAEHLFDEEVVPVASRVFRDRH---EIRTP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +  + +  L T     P     +  LA V+    +      +   ++ I +  +  +G
Sbjct: 185 ADLARVPRLQLAT----RPLAWRQWFDLAGVE---TDAAFQGARFEQFVMISEAAIHHAG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            AL+P + V+    +  LVR+ +  ++     YF YPE       + AFR ++  +AR
Sbjct: 238 AALIPRFFVEAELASGRLVRLFDLSLSQQTAYYFVYPEGRTMRPVVSAFRKWLMEEAR 295


>gi|126445516|ref|YP_001063810.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126225007|gb|ABN88512.1| transcriptional regulator [Burkholderia pseudomallei 668]
          Length = 301

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 123/290 (42%), Gaps = 15/290 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  +  LE EVG  L  R  R L +TE G
Sbjct: 8   NLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEVGASLVVRTTRRLNVTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    ET    +   +    G LR++  +D G  ++   L      +P ++
Sbjct: 68  RAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPALE 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D++ +D+  D  D AIRL +   S+    R L        A+P ++     P S 
Sbjct: 128 IELQCDDRVVDLVRDNLDVAIRLGRLADSNHRAAR-LGGFERWLVASPAFVARHGAPASP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQV---NSYLSIMQYCVLGS 239
           + L     +    +    +E  N         GE   + C +    N+  +     + G 
Sbjct: 187 EALGALPYVMLSTVPRTTLELANAH-------GERASVRCRRAFASNTATACRAAVLAGG 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G  +   +   D+     LVR++     P   ++  +P A   + K++A 
Sbjct: 240 GFGVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRAL 289


>gi|330989468|gb|EGH87571.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 303

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 135/291 (46%), Gaps = 20/291 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ L  F + +   S + AA  L +  +++SR+I+ LE  + +KL  R  R   LT++
Sbjct: 25  FDWEDLHYFVMFSAIRSLSGAARVLGVEHATVSRRIASLEKSLNVKLVDRRKRLYELTDE 84

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L  +  ++  + +        + V    ++ I+    +    L   L  F  ++P I
Sbjct: 85  GRRLAAIGRQIEAQTQAIGRLAVAAQVAQGVEVTISAPPSVAVEKLVPQLGAFRAMHPGI 144

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+ D++   +S   +D  IR  +P++ S ++ R++ T     Y A  YL+  R P  
Sbjct: 145 VLRLLGDHQYSSLSSCQSDLCIRFSRPVE-SGIVARRIGTASFSFYCARFYLEE-RHP-- 200

Query: 183 IQELDKHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               + +  I + +   + M D    WL  +   +GE R   L+  +    ++    G G
Sbjct: 201 ----EHYEFIAYDN---ELMSDSQNGWLRNI---VGE-RPFVLEAKTVELQIRAAETGVG 249

Query: 241 IALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           IALLP + V+ N  L R+  ++  P    V+    E L+    ++A  N++
Sbjct: 250 IALLPSFAVEANSRLCRV--ELSAPLEVDVWLGVHEDLRAVASIQAAMNYV 298


>gi|332283392|ref|YP_004415303.1| regulatory protein [Pusillimonas sp. T7-7]
 gi|330427345|gb|AEC18679.1| regulatory protein [Pusillimonas sp. T7-7]
          Length = 297

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 89/187 (47%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA +L ++ S++S  I  LE  +G++L  R  R ++ TE G +
Sbjct: 7   NDLQAFVAVARDQSFTKAAAKLGVTPSALSHTIRALEERLGVRLLARTTRNVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R  + ++ +L      L E   KP+G +RI  T D  +  ++  L  FL  +PDI ++
Sbjct: 67  FMRSIAPLFEQLAAEIEVLGELRDKPAGTIRITCTDDSIEMSVRPMLAGFLKEHPDITLE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             +D    ++  +  D  IRL + +    +  R      +    AP Y +    P +  E
Sbjct: 127 FYIDYGFTNVVEERFDAGIRLGEAVSKDMIAARIGPDWRLVVVGAPEYFERNPIPETPHE 186

Query: 186 LDKHNLI 192
           L  +  +
Sbjct: 187 LTNYACV 193


>gi|330818555|ref|YP_004362260.1| Transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327370948|gb|AEA62304.1| Transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 307

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 114/248 (45%), Gaps = 10/248 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V    SF  AA QL +S ++++R +  LE  + ++L  R  R L+LTE G +  
Sbjct: 7   MRVFTRVVDLESFNLAARQLGMSAAAVTRSVGMLEAHLNMRLLNRTTRSLSLTEAGREYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  KL+  +  L  ++  P G LR+A ++      L   L  + L +P +   + 
Sbjct: 67  DGCRTIIEKLDEIESNLVRATRDPRGTLRVAASMSFAAGGLGELLAAYRLQHPRVGFDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  ID+     D      + + S++L+ R L T+     A+P YL     P     L+
Sbjct: 127 TFDTHIDMVEGGYDVCFSDDRRLVSATLVSRALTTVREVLVASPAYLARHGTPADPGALN 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGS-GIALL 244
           +H+L+T  D   +  E        DR  G  R+   Q   +S  ++++   L   GIALL
Sbjct: 187 EHSLLTVSDGTARTWE------FADRD-GVCRVYTGQALASSGSAMVRVAALSHMGIALL 239

Query: 245 PDYIVKDN 252
           P+ +V  +
Sbjct: 240 PEPLVAGD 247


>gi|317404268|gb|EFV84701.1| hypothetical protein HMPREF0005_04599 [Achromobacter xylosoxidans
           C54]
          Length = 314

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 123/274 (44%), Gaps = 19/274 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA + SFT A+E+L LS+S+I + I+ LE  +G +L +R  R ++L+++G   +  
Sbjct: 17  AFVRVADAQSFTLASERLGLSRSAIGKCIARLEQGLGARLLHRSTRSVSLSDEGRLFYEH 76

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +++     +      P G+LRI   + LG+  +   L  +L  +P+++  +   
Sbjct: 77  AQRILAEVDNATGAMASRQEAPRGRLRIDLPVALGRLHIMPLLAGYLRQWPEVEADVSFS 136

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   D+  D  D AIR+      S L++R L    +   AAP YL+    P S   L +H
Sbjct: 137 DDYADLVRDGIDLAIRIGGE-ADSRLVRRVLAPHRLITCAAPAYLERHGVPASPDALARH 195

Query: 190 NLITF---GDLIP---KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             + F   G  +P           +A   R         L++    ++    + G+GI  
Sbjct: 196 RTLAFTHMGAPVPWRYASHGQERSVAVAGR---------LRLGDTEALRDAALEGAGIVQ 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           L  ++V ++     LV ++E    P   V   YP
Sbjct: 247 LGAFLVGEDLRQGRLVPLLETHAPPGAPVCAVYP 280


>gi|307945337|ref|ZP_07660673.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307771210|gb|EFO30435.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 315

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 1/190 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A  GSF+ AA+QL +SQ ++S+ +  LE  +G +LF R  R L LTE G +  
Sbjct: 7   LASFVRAADLGSFSSAAKQLGISQPAVSQHVRSLEDSLGARLFNRTTRRLALTEAGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +L    + +Q    + SG L I   +   +N+L   L  F   +P + +++ 
Sbjct: 67  TQAKDIVERLRDADLSVQSEEAQMSGSLAIGLPMGFAENVLSDFLIAFKKEHPCLLLEIS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  +  D AIRL + I+   LI +++        A+P YL     P   ++L 
Sbjct: 127 ISDLFVDVMAERLDVAIRLGE-IRDDRLIVKRIGLSQRCLVASPDYLNRRGRPEKPEDLT 185

Query: 188 KHNLITFGDL 197
            H+ + + ++
Sbjct: 186 GHDYLLYKNI 195


>gi|259415379|ref|ZP_05739300.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259348609|gb|EEW60371.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 304

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 14/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V   G+ + AA  + +S +  S +IS LE  + ++LF R  R L  TEQG  
Sbjct: 5   NNIRTFVRVYELGNMSAAARDMRISAAVASSRISQLEEHLKVRLFQRTTRLLHPTEQGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +E  + ++   +  P G L +A  + +GQ L+   + +F   YP I I+
Sbjct: 65  FYHGAVKILEAVEEAEADISNVTQTPRGTLYVAAPLGVGQRLIAPAVPQFNAAYPLINIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D++ +  D A  L  P + S+L  RK+        A+P Y+K    P S  E
Sbjct: 125 LRLSDRKLDLAAEGLDAAFFLGLP-EDSNLKIRKITDCPRVLCASPAYIKARGMPTSSAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSG 240
           L            P   E F W   +  P G  R++      Y S     + Q+ + G G
Sbjct: 184 LKTEAHDCLNLRYPGAPE-FQW--PLHGPEGIRRVAV--SGPYESDHGDVLTQWALDGHG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I L P + + +   +  LV ++ D    +  +   Y        K++ F +F+
Sbjct: 239 IILKPVFEISEHLASGRLVPVLPDEPPATIQMACLYMHRRHQDPKVRLFLDFM 291


>gi|188592018|ref|YP_001796616.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|170938392|emb|CAP63379.1| putative transcriptional regulator, LysR [Cupriavidus taiwanensis
           LMG 19424]
          Length = 335

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 130/294 (44%), Gaps = 12/294 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+    F  V   G+FT AAEQL   +S +S  ++ LET +G KL  R  R + LT+
Sbjct: 11  TIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTD 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  ++R  + ++ +L   + E      +  G LRIAT  + G   L G +   L  +P 
Sbjct: 71  AGKAVYRDVAPLFARLREIRQETLAREERVQGVLRIATPYEFGAQQLGGVICRTLAAHPA 130

Query: 122 IQIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + + + +    +D   D  D A + +   +  S  + R++  +    +AAP    +    
Sbjct: 131 LDVAVEITQGLVDPIRDGYDVAFVIVDADLPDSGTVARRIYHVERGLFAAPALAASLPAQ 190

Query: 181 LSIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  ++L +   L T GD + +   D     TV  PI  PR   +Q ++    +Q  + G 
Sbjct: 191 LRPEDLANMPTLTTPGDTVWEFTRDGQ---TVSVPI-RPR---MQTHNAELRLQGALAGL 243

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L     +       LVR++ D   P   V+   P+      K++AF   I
Sbjct: 244 GIARLSVIYCEAEVAQGRLVRVLPDYPLPPLRVFALLPDRRLQPRKVRAFMEAI 297


>gi|90022872|ref|YP_528699.1| regulatory protein, LysR [Saccharophagus degradans 2-40]
 gi|89952472|gb|ABD82487.1| LysR, substrate-binding [Saccharophagus degradans 2-40]
          Length = 298

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 133/283 (46%), Gaps = 8/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R +  V ++GSF+ AA +L+LS+  +SR +S LE ++G++L  R  R +++T +G    
Sbjct: 7   MRAYCQVVKAGSFSAAARELNLSKVLVSRYVSELEADLGVRLLQRTTRKMSVTAEGQAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIAT-TIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  V   +   +  ++  +   +GKLR+A  T       L   + EF   +P ++  +
Sbjct: 67  ERSLVVLQDVTELEDAIKNKTGAITGKLRLAAPTEAFSVEHLMPLIGEFAQAHPSVEFDI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  DI  +  D AIR+ K ++ SSL+ RKL  + +   A+P Y+ +     + ++L
Sbjct: 127 EMSDRYTDIVDEGYDLAIRIGK-LKDSSLVARKLADMQVILCASPQYIASNTPISAPEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + H  I   + +      F    TV     +P      +N+  +     + G G+ + P 
Sbjct: 186 NTHTHIVDSNFLNGANWPFKQQETVVNIKPQP---MFLINNSPAARALLLQGLGVGVCPS 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + V++      LV+++ +       +Y  Y      + K+  F
Sbjct: 243 FTVREQLQTGELVQLLPEWELSKGGIYVVYSHRKHLSAKVSGF 285


>gi|15601643|ref|NP_233274.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121726484|ref|ZP_01679748.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147672468|ref|YP_001215190.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153212382|ref|ZP_01948164.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|153819725|ref|ZP_01972392.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153822363|ref|ZP_01975030.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227812455|ref|YP_002812465.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|254850053|ref|ZP_05239403.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746364|ref|ZP_05420311.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|258627622|ref|ZP_05722398.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|262158281|ref|ZP_06029398.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262169156|ref|ZP_06036849.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|262173453|ref|ZP_06041130.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|298499669|ref|ZP_07009475.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9658322|gb|AAF96786.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121631079|gb|EAX63456.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|124116590|gb|EAY35410.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|126509743|gb|EAZ72337.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126520126|gb|EAZ77349.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146314851|gb|ABQ19391.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|227011597|gb|ACP07808.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227015537|gb|ACP11746.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|254845758|gb|EET24172.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736118|gb|EET91516.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|258580065|gb|EEW05038.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|261890811|gb|EEY36798.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|262022437|gb|EEY41145.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|262029963|gb|EEY48610.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|297541650|gb|EFH77701.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 312

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P+   +
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPIHPTD 189

Query: 186 LDKHNLITFGD 196
           L +H+ +   +
Sbjct: 190 LAEHDCLYLAE 200


>gi|148360176|ref|YP_001251383.1| LysR family transporter transcriptional regulator [Legionella
           pneumophila str. Corby]
 gi|148281949|gb|ABQ56037.1| transcriptional regulator, LysR family [Legionella pneumophila str.
           Corby]
          Length = 302

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 136/292 (46%), Gaps = 15/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F       SF+ AA++L++S S +S+QI+ LE E+ + L  R    LT+T+ G +L+
Sbjct: 7   LKGFITTVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLIRSTTRLTVTDSGHRLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +++ +LE  ++      ++ +G +R+  T+      L     +F+  YP I++ +I
Sbjct: 67  EKALQLFEQLEAVKVIATPDQLELNGVIRLYLTVTPAIPYLTKLSIQFMRQYPKIEVDII 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   ++     D AI     ++ S L+ ++L +I    +A+P Y+     P ++ EL 
Sbjct: 127 VGSDTKELYSSTFDLAISFDD-VKHSKLVCKRLFSIQRKVFASPGYITQHGLPQTLDELP 185

Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           KHN +  T   L  K +  FN    +    G       + N+   + Q  V   GI   P
Sbjct: 186 KHNCLINTLYGLQNKWV--FN--KKIIHVSGN-----FKSNNAGVLKQAAVADVGILWAP 236

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + V +   N  L+ ++ +  +P   +Y   P+   +  K+    NF   KA
Sbjct: 237 YFSVYEEIKNEALIPVLPNESSPDINLYAICPKPTVDEQKINLLLNFFCEKA 288


>gi|88799099|ref|ZP_01114679.1| transcription regulator, LysR family protein [Reinekea sp. MED297]
 gi|88778082|gb|EAR09277.1| transcription regulator, LysR family protein [Reinekea sp. MED297]
          Length = 295

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 119/263 (45%), Gaps = 12/263 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW++ R F V A  GS + AA  L+++Q ++ RQ++ LE E+ + LF R  +GL LT
Sbjct: 6   VNFDWNRARAFLVTAEEGSLSAAARALNMTQPTLGRQVAALEKELNVTLFERVNQGLVLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L     ++        +          G + I+ +       L    ++     P
Sbjct: 66  PSGVQLLEHVRQMGSAASAFSLSASGQEKALEGTVCISASEVDAVFRLPEIAEKVRKEEP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++  + N+  D+    AD A+R  +P Q   LI RKL+   +  Y +P YLK     
Sbjct: 126 GIVLEFAVSNEVSDLKKREADIALRSFRPSQ-PDLITRKLMQERIWFYGSPDYLKPYANM 184

Query: 181 LSIQELDKHNLITF--GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            + QE+ + ++I +  GD     +    W +  V+ P+   R   LQ+       +    
Sbjct: 185 TTPQEVREIDIIGYDHGDQFKNALVQQGWPIENVNFPL-VTRFWILQI-------ELIKR 236

Query: 238 GSGIALLPDYIVKDNPNLVRIME 260
           G G+ LLP+ +    P L R  E
Sbjct: 237 GLGVTLLPEDVGDSIPELCRGFE 259


>gi|167615094|ref|ZP_02383729.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257141667|ref|ZP_05589929.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 299

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 124/290 (42%), Gaps = 15/290 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  I  LE EVG  L  R  R L +T+ G
Sbjct: 8   NLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHIQRLEAEVGASLVVRTTRRLNVTQAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    ET    +   +    G LR++  +D G  ++   L      +P + 
Sbjct: 68  RTFYDACRDILRATETALAAVAGEAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPALD 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P + 
Sbjct: 128 IELQCDDRVVDLVRDSLDVAIRLGR-LADSNHRAVKLGGFERWLVASPAFVARHGAPPAP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQV---NSYLSIMQYCVLGS 239
           + L     +    +    +E  N         GE   + C +    N+  +     + G 
Sbjct: 187 EALGALPYVMLSTVPRTTLELANAR-------GERASVRCRRAFASNTATACRAAVLAGG 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G  +   +   D+     LVR++ D   P   ++  +P A   + K++A 
Sbjct: 240 GFGVATSFSSADDIAAGRLVRLLPDWSFPPGDIHAVFPSASHPSAKVRAL 289


>gi|167578018|ref|ZP_02370892.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|257142726|ref|ZP_05590988.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 322

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   DNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P + ++
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPTTPED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSG 240
           L KH  +          E   W   ++R  GE  +  L     Q N   ++      G G
Sbjct: 185 LAKHVCLRLDTPASPGGE---W--RLERDDGEETVYALPPAPFQANVPDALSVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F
Sbjct: 240 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTF 288


>gi|149908675|ref|ZP_01897336.1| putative transcriptional regulator [Moritella sp. PE36]
 gi|149808217|gb|EDM68156.1| putative transcriptional regulator [Moritella sp. PE36]
          Length = 311

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 127/277 (45%), Gaps = 16/277 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VAR  SF+ AA+QL+++QS++S Q+  LE  +G  +F R  R L++T+ G + +
Sbjct: 9   LQCFEAVARFNSFSKAADQLNITQSAVSHQVRQLEEYLGESMFNRKGRTLSMTDMGERYY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+    + T   +++E     SGK+R+A    L    L   L      YP+I + L 
Sbjct: 69  EEVSQSLANISTASQQIREGK---SGKIRLALYSSLAVKWLIPRLDNLRQQYPEIDLSLN 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +   + D S   ADC I +  P    + + + L    ++        +  ++      L 
Sbjct: 126 MVADEPDCSDQVADCFITVNPP--KRNFVSQFLYAERLYPVCGKKLWQQIQDQPLPDALW 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSY-LSIMQYCVLGSGIAL 243
           +H L++   + P      +W    +  +G    P+ + +   S+ L   +      GI L
Sbjct: 184 QHPLLSVQSVYPDSALGEDWQRWCE--LGGFTLPKTATVHYFSHMLMAAEAARYDQGITL 241

Query: 244 LPDYIVKDNP---NLVRI-MEDVITPSFTVYFCYPEA 276
           L  Y++ D     NLVRI M +++T     YF Y ++
Sbjct: 242 LNHYLMNDQDRQHNLVRIPMHEILTGD-NFYFVYKKS 277


>gi|117619846|ref|YP_855443.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561253|gb|ABK38201.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 299

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 130/296 (43%), Gaps = 17/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  FY V + GSF+ AA+ L +S+  +SR +S LE+ +  +L  R  R L+LTE 
Sbjct: 1   MDISHLASFYEVVQKGSFSAAADSLGVSKGMLSRHVSALESTLNAQLLQRTTRRLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   E++      + ++Q  + +  G+LR    +  G  ++   L  F  L P +
Sbjct: 61  GRTLYQQAGEIFALARQAEQDIQALTEEDGGRLRFTCPVSTGDRMVNDLLARFAELCPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L   N  ID+S    D A+R    I   +L+   L  +     A+P  L     P++
Sbjct: 121 QVELNFTNAMIDMSQGEHDIALRAMSSI-PDNLVALPLGRLKDVVVASPALLAREGIPVT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVL 237
             EL   + +  G       E +++        GE     L     + N Y +++Q    
Sbjct: 180 PYELGGRSCLLQGH--NPAWEQWHFRK------GEEEAHILVQGKVRANHYSTVLQLARA 231

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G A  P  +V+       LV ++ +  T    ++  + +  +   K++ F+  +
Sbjct: 232 GMGYAKCPLMLVEPWLAQGELVTVLAEWQTGLHPLHVLHAQQRRVPRKIRLFKQVL 287


>gi|56696966|ref|YP_167328.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678703|gb|AAV95369.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 283

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 133/302 (44%), Gaps = 26/302 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD L+    V  +GS   A+ Q+ ++ +++ R+I+  E  VG ++F R  RG  L   
Sbjct: 1   MNWDDLQFVLSVVEAGSVAGASRQMGVNHATVLRRIAAFEESVGTQVFDRTPRGYVLRPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             +L     EV   +++     Q      +G +R+ +T  L Q LL   L +      ++
Sbjct: 61  RLRLIAAAREVGQAVQSVHQLAQGLDAPLAGHVRVTSTDTLCQCLLPEILADLRQSAGEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ LI  N  +++S   A+  +R   P+    L+    +++   AYAAP     C     
Sbjct: 121 RLSLISTNSHLNLSRLEAELTLR-PAPVLPEGLVGESPISMAFAAYAAP----GC----- 170

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               +    + F D   +    + WL     P  E   +    +S+L + +    G G A
Sbjct: 171 ----ENAGWLGF-DGAMRRSRPWAWL----EPQLERGAAIGSADSFLVLREMVAQGLGRA 221

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI--FLKARDW 297
           LLP +I +D+P LVR+  +V  P  T   ++    E L +  +L   R  +   L+AR  
Sbjct: 222 LLPCFIARDDPRLVRL--EVGLPPETATPIWVACHEELADVPRLIRVRGLLCQALRARAA 279

Query: 298 KF 299
           +F
Sbjct: 280 RF 281


>gi|254224788|ref|ZP_04918404.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125622851|gb|EAZ51169.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 312

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 121/257 (47%), Gaps = 30/257 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L IA       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPAGALTIAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP----- 180
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P     
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPTHPTD 189

Query: 181 ------LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
                 L + E DK ++ TF     K  E      +    + + ++    V ++L     
Sbjct: 190 LAEHDCLYLAETDKDHIWTFA----KGRETHTVAVSGRYAVNQSQLRLTGVKNHL----- 240

Query: 235 CVLGSGIALLPDYIVKD 251
                GI +  D++V+D
Sbjct: 241 -----GIGIFHDFVVQD 252


>gi|260776722|ref|ZP_05885617.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607945|gb|EEX34210.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 302

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V AR  S++ AAE+L +SQ+++S++I  LE  +G KLF R  R + LTEQG  L 
Sbjct: 11  LRYFEVAARLNSYSRAAEELFISQAAVSQKIRQLEDGLGCKLFVRDGREMRLTEQGKILF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S  +  + T   ++Q   ++  G L + +T       L   L +F   +P+I I+++
Sbjct: 71  KHVSHGFEHIITGLNQIQSEPIE--GLLCVNSTPSFASRWLLPRLWKFSTQHPNIPIRIL 128

Query: 128 LDNKDIDISMDYADCAIRLRKPI---QSSSLIQRKLVTIHMHAYAAPHYLK--NCREPLS 182
                 ++    AD AI   + +    + S  +  L    ++ + +PH  K  N ++P  
Sbjct: 129 TSCDAPNLKQGDADLAIWQGEQLDIESNKSFHKEFLFEETIYPFCSPHLAKSINLKKPSQ 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +Q     +  + G          +W A     + +  +  ++V+++   M+  + G G  
Sbjct: 189 LQACWLIHYESGGYPWE------SWFAQAGVSMSKNSVRWMEVSTFDHAMKAVMSGHGAC 242

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  D +  D      LV+  +  +TP       Y E      +++AF N++
Sbjct: 243 LASDSLASDYVERGLLVKPFDIGMTPGIQFNLFYSEDSPRKKRIQAFVNWL 293


>gi|237508921|ref|ZP_04521636.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|235001126|gb|EEP50550.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 312

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 8   NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 67

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 68  NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 123

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 124 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYARRHAV 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L   + I  G L       ++      R +       L+V S L   Q  + G+
Sbjct: 183 PRHPDDLPGSHWIGHGGL---ANLSYSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGA 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 240 GISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 292


>gi|170702258|ref|ZP_02893159.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170132834|gb|EDT01261.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 323

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 119/253 (47%), Gaps = 7/253 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  + G TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F + +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVANTGGALSGHVRIGSTEGFGCFFLAPQLARFRVAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +   ++  KL    +  YA   YL N    
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATRDYLANHAPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  +++ D +    E    L  ++R +     + L+  S ++ +   + G  
Sbjct: 190 TCTDDLARHAFVSYVDDLAFSSE----LLYLERAV-PGATAGLRTTSVIAQVFAALQGGA 244

Query: 241 IALLPDYIVKDNP 253
           +A+LP ++    P
Sbjct: 245 LAILPCFMAATQP 257


>gi|156977706|ref|YP_001448612.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156529300|gb|ABU74385.1| hypothetical protein VIBHAR_06494 [Vibrio harveyi ATCC BAA-1116]
          Length = 301

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 97/187 (51%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LT+ G+  H
Sbjct: 1   MTLFVSIVKNQGLAAAGRELGLSPATVTARLQSLEDRYGVKLLNRSTRHISLTDSGAMYH 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   ++ T+  LQ  + +  G L+I+   D+G+  +   L EF  LYPD+   L 
Sbjct: 61  QACLEIIDSVKETENLLQTGTKEVRGTLKISAPRDIGKQYISPILSEFSQLYPDVIPYLY 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++   +++    D  IR  + +  S+L+ RKL +      A+P YL     P++ Q+L 
Sbjct: 121 LNDNLSNLAESGLDIVIRYGE-LADSNLVSRKLASSRRVLCASPQYLAKKGTPITPQDLA 179

Query: 188 KHNLITF 194
           +H+ +  
Sbjct: 180 QHDCLAM 186


>gi|170720650|ref|YP_001748338.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758653|gb|ACA71969.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 325

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 126/296 (42%), Gaps = 16/296 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ L  F   A  GSF  AA +L ++ +++ + ++ LE  +G++LF R  R LTLTE G
Sbjct: 19  SFNALECFIRSAEVGSFAEAARRLSITPAAVGKHVAQLEARLGVRLFQRSTRKLTLTEAG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     S+ +  ++     L  +  +P+G LR++     G+  +   L EFL  YP I 
Sbjct: 79  QRFLGEVSDSFRTIQYAVANLASAEGQPAGLLRVSMGTVFGRLYVLPLLGEFLRRYPAIT 138

Query: 124 IQLILDNKDIDISMDYADCAI--RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
                DN+ +D+     D AI      P+    ++ R+L   H    AAP YL       
Sbjct: 139 PDWHFDNRQVDLIGQGFDAAIGGGFELPL---GVVARRLTPAHRVLVAAPGYLSQHPVIE 195

Query: 182 SIQELDKHNLITFGDLI--PKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVL 237
             Q L +H     G LI  P+     +W  T      +P +    + ++   +       
Sbjct: 196 DPQVLGRHA----GILIRSPQTGRVRSWPLTSRWQAQQPLLLRQAMTMSDSDAACAVAQQ 251

Query: 238 GSGIAL--LPDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIAL  LP  +       L R++ D       +   Y E     GK +AF  F+
Sbjct: 252 GLGIALVSLPFAVPYLQAGQLQRVLPDWYVDDGHISLYYAEHKLLPGKTRAFIEFV 307


>gi|54308401|ref|YP_129421.1| DNA-binding transcriptional regulator DsdC [Photobacterium
           profundum SS9]
 gi|46912829|emb|CAG19619.1| hypothetical D-serine deaminase activator [Photobacterium profundum
           SS9]
          Length = 304

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 132/293 (45%), Gaps = 20/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F + A   SFT AAE L L+QS++S +I  LE  +G+KLF R  R + LT++G +L 
Sbjct: 14  LHCFLIAADQMSFTRAAEVLCLTQSAVSHKIKNLEDSLGVKLFIRQPRKVILTDEGKRLK 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V ++ +  +     +L+  +++ SG   ++      Q  L   +K F+  YP +++ L 
Sbjct: 74  AVVAQNFGDIAHEIRDLK--TLELSGDFNVSAPPTFAQTWLMPRIKSFIDKYPALRLHLR 131

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             N  ID   +  DCAI         + S  L+   ++ +  H YA  + L +  + L +
Sbjct: 132 TRNDLIDFQTETFDCAIYFGHGKYAGLHSEKLMDESMLPVCTHEYALRYNLYDRPDNLVM 191

Query: 184 QELDKHNLITFGDLIPKCMEDFN--WLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
                   +   D  P      N  W     R  I  P + C    S L+ +Q    G G
Sbjct: 192 -------CMLLHDAAPWARAGRNDEWQYWAQRQGITLPEVGCTFDRSDLA-LQAAERGIG 243

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+     + +   N  LV   +  +    + Y    + +K++ ++KAF++++
Sbjct: 244 VAMGRMSFIAEQLANERLVIPFDMPVKSPLSYYVVCRQDMKSSPRVKAFQDWL 296


>gi|241667526|ref|ZP_04755104.1| LysR family transcriptional regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876072|ref|ZP_05248782.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842093|gb|EET20507.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 300

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 133/285 (46%), Gaps = 15/285 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
             +FY +   GSFT+ A  L +++++IS  I  LE E+ + L  R  R L+LT +G  L 
Sbjct: 14  FEIFYKLVTYGSFTNTANALGITKAAISHSIKQLEKELKVDLLIRTTRRLSLTHEGKLLF 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + +++E  +   +    +PSG L+I T+    +++L G +KE+   +  ++I++ 
Sbjct: 74  EYCKTLQNEIENIRDLAESFHSEPSGTLKINTSSFFAKSVLIGLIKEYSKRFSKVKIEVN 133

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +  +      D  + +   P     +I RK+ T      A+P YL++   P ++ +L
Sbjct: 134 IEERMPNFKTQETDIILGVNWTP--PEDIIARKIATTRYILCASPVYLQHNSIPSNLSDL 191

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS-YLSIMQYCVLGS-GIALL 244
             H  I               L  + +    P+    ++++  +  ++ CVL   GIA  
Sbjct: 192 ANHKYILHKSRT-------TALVNIKKNNLNPQTLPFELSANNIEFIKECVLNDLGIAQF 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +YIVKD   N  LV +++D       +Y  YP+      K+K F
Sbjct: 245 HEYIVKDEIQNGKLVELLKDEFLDQQDIYIYYPKNKFVQPKVKEF 289


>gi|87122005|ref|ZP_01077890.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86162803|gb|EAQ64083.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 305

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 121/253 (47%), Gaps = 6/253 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           ++ ++L  F  +    + T AAE+L LS++ +S+Q+  LE E+G+ L  R+ R L  T+ 
Sbjct: 7   YNLNRLTYFVAIIEEKTITAAAERLGLSKAVVSKQLQLLEEELGVSLVVRNTRHLHATKT 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  + E     +       E S +PSG +R+ + IDLG   L   + +F   YP +
Sbjct: 67  GEAFYTRSKEALKYAQHAFDTAAEDSHEPSGLIRLTSPIDLGIFQLAPIITQFCAKYPKV 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I++ L ++  DI     D + R+   +Q SS   RK+ +    A + P + KN   P +
Sbjct: 127 KIEVNLSDEVKDIVAKRYDLSFRV-GWLQDSSNRARKIGSFREVALSTPAFAKNW-APKT 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++L       + D+I +    F   A   T ++       + L  N+ L+I +  +   
Sbjct: 185 PKDLSSLPFTAY-DVIDRSTRTFIHQASRGTKEQSTEVELTTNLSFNTTLAIREALLTSQ 243

Query: 240 GIALLPDYIVKDN 252
              +LPD+ VK +
Sbjct: 244 YFGVLPDFTVKKD 256


>gi|327393875|dbj|BAK11297.1| transcriptional regulator LysR family YagP [Pantoea ananatis
           AJ13355]
          Length = 299

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 138/311 (44%), Gaps = 29/311 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L VF  VA   +F+ AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPVFIAVAEESNFSKAAARLGVTRSAVSQGIRRLEDTFGTMLVMRTTRAVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLY 119
           E G +LH+  S     +     E+    V P G LRIA T  + +  L G L   F    
Sbjct: 61  EAGERLHKSLSLPLTGINAAFEEIVSDPV-PRGLLRIAVT-SIAEEFLSGPLIASFAAAN 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHY 173
           P + + +++ +++ DI     D  +RL + I+   +       QR++V       A+P Y
Sbjct: 119 PAVTLDIVVTDEEFDIVAAGYDAGVRLGEVIEKDMIAVPLTGEQREMVV------ASPSY 172

Query: 174 LKNCREPLSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
                 P+  ++L  H  I +     IP     F    +      EP+I+    N    +
Sbjct: 173 FTANGLPVHPRDLVHHQCIGWRQSPHIPPYRWPFEENGSAFDLAIEPQITT---NDLRLM 229

Query: 232 MQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY-PEALKNTGKLKAFR 287
           ++  + G GI L      +   ++  LV +++D + P+F  ++ Y P+      KL+A  
Sbjct: 230 LRLALTGGGITLATQETFRPYIESGELVSVLDDFL-PTFPGFYLYFPQRRNMAPKLRALI 288

Query: 288 NFIFLKARDWK 298
           + +    R W+
Sbjct: 289 DHV----RKWR 295


>gi|326319457|ref|YP_004237129.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323376293|gb|ADX48562.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 310

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 28/298 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK- 65
           +L  F  VA +GSF+ AA +  L+ S++SRQ++ LE  +G+ L  R  R L LTE G + 
Sbjct: 12  ELVAFVRVAEAGSFSAAARRHGLTPSAVSRQVARLEKTLGVSLLQRTTRQLRLTEAGLEV 71

Query: 66  LHRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           L R  + V     T Q    E  V  P G +R++      +++L G L  FL L+P++ +
Sbjct: 72  LERGRAMVAEARATLQA--AEGHVGAPRGLVRLSAPKAFARHVLHGPLLSFLRLHPEVDL 129

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L++ ++ +D   +  D  +R+   P Q   +  R L+ +     A+P YL         
Sbjct: 130 HLLVLDRPVDALREDIDLVVRMTDDPPQ--GMAARALMPVRQWVLASPGYLAARGAVRRP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSI----MQYCVL- 237
           ++L  H+ +  G+       D  W             +  +QV    ++    M+   + 
Sbjct: 188 EDLASHSCLPLGE----QAGDSRWRFVRDGDGRRGDGVVEVQVTGRYTVNHSEMRLAAIE 243

Query: 238 -GSGIALLPDYIVKDNPNLVRIMEDVITPSFTV--------YFCYPEALKNTGKLKAF 286
            G G+  +PD++  D     R++   + P +TV        Y  +P +     KL+A 
Sbjct: 244 AGLGVGCVPDFVAGDALQDGRVVR--VLPGWTVDSHYQGIAYLVFPASRHTAPKLRAL 299


>gi|167467785|ref|ZP_02332489.1| substrate-binding transcriptional regulator, LysR family protein
           [Yersinia pestis FV-1]
          Length = 291

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 122/269 (45%), Gaps = 7/269 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G ++  
Sbjct: 4   RAFLCVARERSFTKAAGKLGVSQSALSHAIKGLEERLNLRLLTRTTRSVAPTEAGERIIA 63

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                   LE     L + +   SG +R++      ++LL   LK FL  YP+I ++L++
Sbjct: 64  CLEPRLADLEQELETLLQLNGTVSGNIRLSAGEHAARSLLWPKLKPFLRKYPEINVELVV 123

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           DN  ++I     D  +RL + +    +  +    + M    +P Y      P++  EL  
Sbjct: 124 DNGFVNIVDGRFDAGVRLGESVDKDMIAVKIGPEMRMAVVGSPEYFMANAIPVTPHELQH 183

Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I     +P     ++W      +P+       L +N     +     G G+A +P+ 
Sbjct: 184 HRCINM--RLPTAGGLYHWEFEKEGKPLRVKVEGQLTLNILPERIDAAQSGFGLACVPED 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCY 273
            ++    +  L++++E    PSF  Y+ Y
Sbjct: 242 SIQAFLRSGKLIQVLE-AWCPSFPGYYLY 269


>gi|87120733|ref|ZP_01076626.1| Transcriptional Regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86163961|gb|EAQ65233.1| Transcriptional Regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 314

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 127/274 (46%), Gaps = 9/274 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F V AR  +FT  A++LH++Q ++S+QI  LE ++G KLF R+ R LTLT +G++L 
Sbjct: 10  LFTFEVAARHLNFTKTADELHITQGAVSQQIRQLEEKIGFKLFERYHRRLTLTAEGARLA 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +  + ++++   EL+E   K S  L ++         L   L +    YPD+Q+++ 
Sbjct: 70  LQLNHNFTEIDSLINELKED--KQSNILTLSVMPSFASKWLIPRLGDLQSAYPDMQLRIQ 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCREPLSIQE 185
            ++K+++   D  D AI +   +   +  Q  L+   +    +P + K  N  EP  +  
Sbjct: 128 ANDKEVNFRRDKVDVAI-VHSHLYKGNDFQVPLIKDKVFPVCSPEFAKQHNLLEPQQLVG 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L   N  +        +E  NWL   +    +P    +  N     +Q  V G GIAL  
Sbjct: 187 LPLLNDDSESRFSTPYVEWENWLQKANVKGVKPS-RAISFNRGDLAIQAAVAGQGIALGR 245

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
             +V D+     L++     +    +  F  P+A
Sbjct: 246 TPLVMDDIQSGQLIKPFSVELDEGLSYLFVCPQA 279


>gi|313498168|gb|ADR59534.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 301

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 12/246 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  VA   SF  AA  L  S S+++R +  LE   G KL  R+A  +TLTE G +L
Sbjct: 8   EIQAFVSVAHKRSFVAAARALGRSPSAVTRAVQTLEDNAGSKLLNRNANAVTLTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +         EL   S    G +R A    LG+++L   L EF   +P + + +
Sbjct: 68  LPHAERLLDVQRDAADELAALSGSAQGWIRFAAPQLLGEHVLPQVLAEFSRRHPQVTLDV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D      D  +R   P QSS LI   L     H YA+P YL     P   ++L
Sbjct: 128 QYSDEALDPLQGKFDFVVRGAFP-QSSELIGYPLWPYQRHLYASPAYLALAGTPQHPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           D H LI      P+ ++ +++      T  RP   PR   L++ S  ++    + G+GIA
Sbjct: 187 DGHTLILH--TAPRILKAWHFCHDDQITSLRP--RPR---LRLGSGGAVYHSALAGAGIA 239

Query: 243 LLPDYI 248
            L  ++
Sbjct: 240 RLAAWV 245


>gi|293611088|ref|ZP_06693387.1| transcriptional regulator [Acinetobacter sp. SH024]
 gi|292826740|gb|EFF85106.1| transcriptional regulator [Acinetobacter sp. SH024]
          Length = 298

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 1/181 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F V      F+ AA+QL+L +S+IS++++ LE ++G+ L +R +R   L+E G   ++ 
Sbjct: 12  LFVVAVEHQGFSAAAKQLNLPKSTISKRVAILENKLGLTLIHRSSRSFVLSESGKLFYQH 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 +    +  L     +PSG +R++ ++ + Q LL   L E    YP + +Q+ + 
Sbjct: 72  AKNAVDEFRYAEENLLIQQQEPSGVVRLSASVPIAQYLLSDCLPELAERYPKLLLQVEVT 131

Query: 130 NKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D+  +  D  IR   +P+  S LIQR L    + A AA  YLK      + ++L K
Sbjct: 132 DRYVDVMSENFDIVIRSHFQPLPDSGLIQRVLKNDKIIAVAASTYLKKTAPIHTPEDLLK 191

Query: 189 H 189
           H
Sbjct: 192 H 192


>gi|167826669|ref|ZP_02458140.1| LysR family regulatory protein [Burkholderia pseudomallei 9]
 gi|167921367|ref|ZP_02508458.1| LysR family regulatory protein [Burkholderia pseudomallei BCC215]
          Length = 304

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 20/296 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G+K
Sbjct: 2   NHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAGNK 61

Query: 66  LHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           L+  +    S +Y  + + +    ES    +G LR+A         L      F+  +P 
Sbjct: 62  LYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQHPQ 117

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P 
Sbjct: 118 IELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAVPR 176

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L   + I  G L       ++      R +       L+V S L   Q  + G+GI
Sbjct: 177 HPDDLPGSHWIGHGGL---ANLSYSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGAGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 234 SAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 284


>gi|170722074|ref|YP_001749762.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169760077|gb|ACA73393.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 321

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 11/146 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W  L VF   AR  SFT  AE+LH++  ++S+Q+  LE  +G +LF R ARG+ L+ +
Sbjct: 10  FVW--LHVFSCAARHLSFTRCAEELHITPGAVSQQMRQLEERLGYRLFLRRARGVELSAE 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +  +E Y  +E   + L    ++  G LR+ +        L   L  F   YPDI
Sbjct: 68  GQRLAQTVAEAYGSIEAELLRLDAGEIR--GTLRVRSIPSFLAKWLTPRLPRFQQRYPDI 125

Query: 123 QIQLI-------LDNKDIDISMDYAD 141
           +++L+       L+  D D+++D  D
Sbjct: 126 ELRLVAEDSAQALNPGDFDLAIDLND 151


>gi|83716587|ref|YP_438606.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650412|gb|ABC34476.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 305

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 124/290 (42%), Gaps = 15/290 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  I  LE EVG  L  R  R L +T+ G
Sbjct: 14  NLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHIQRLEAEVGASLVVRTTRRLNVTQAG 73

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    ET    +   +    G LR++  +D G  ++   L      +P + 
Sbjct: 74  RTFYDACRDILRATETALAAVAGEAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPALD 133

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P + 
Sbjct: 134 IELQCDDRVVDLVRDSLDVAIRLGR-LADSNHRAVKLGGFERWLVASPAFVARHGAPPAP 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQV---NSYLSIMQYCVLGS 239
           + L     +    +    +E  N         GE   + C +    N+  +     + G 
Sbjct: 193 EALGALPYVMLSTVPRTTLELANAR-------GERASVRCRRAFASNTATACRAAVLAGG 245

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G  +   +   D+     LVR++ D   P   ++  +P A   + K++A 
Sbjct: 246 GFGVATSFSSADDIAAGRLVRLLPDWSFPPGDIHAVFPSASHPSAKVRAL 295


>gi|301381157|ref|ZP_07229575.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
          Length = 307

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 15/241 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A S S + AA +L LS  ++SR+++ LE ++G++L +R  R ++LT +G    
Sbjct: 6   IEVFAAIASSRSLSEAARRLGLSPMAVSRRLAALENDLGVRLVHRTTRSVSLTPEGEVFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E  +  L+  +   SG LR+      GQ ++   L E +L  P + I L 
Sbjct: 66  PHAKTMLQASEAARATLKADAGTASGILRVTAPSVFGQTVIMPLLPELMLENPALSIDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL     P  +  L 
Sbjct: 126 LSDSIVDIAGLGIDVAIRIAT-IRDSALVARSLAPNPRVVCASPDYLMRRGTPTVLDYLR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  I    +         W  T D   GEP           NS  ++      G G+A+
Sbjct: 185 HHPCIALHGMP-------YWSFTRD---GEPVTIRAQGSFSANSVEAVRTASKQGLGLAM 234

Query: 244 L 244
           L
Sbjct: 235 L 235


>gi|239817923|ref|YP_002946833.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804500|gb|ACS21567.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 296

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 129/303 (42%), Gaps = 36/303 (11%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  +A  GS T AAE L  S  ++ R ++ LE  +G++LF+R  R L+LTE+G 
Sbjct: 4   FKAMQTFVQIADQGSLTRAAEALGSSLPAVVRALAALEAHLGVRLFHRTTRRLSLTEEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  EV    +   + L+  + +P+G+L I   +  G   +   +  F+  +  ++ 
Sbjct: 64  HYLPSAREVLLAADAADLALKAEAREPAGQLTITAPVLFGHMYVAPAITRFMQRHDKVRC 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L ++ +++  +  D  IR+  P+  SSL+ + L TI      +P YL     P   +
Sbjct: 124 TVLLHDRTVNLLEEGIDVGIRI-SPLADSSLVAQTLGTIRRVVAVSPDYLARHGTPRHPR 182

Query: 185 ELDK----------------HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNS 227
           +L                  H       + P C  +FN LA        P I +C     
Sbjct: 183 DLHGAPCVRGRVDAPPQWVFHERGKTISVTPSCRLEFNHLA--------PAIEACAAGMG 234

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           + +   Y VL         ++ +    LV  +ED   P   V   YP A     + +AF 
Sbjct: 235 FGTFFSYQVL--------PHVAQGRLKLV--LEDFEPPPRPVSVIYPNARLLPARTRAFI 284

Query: 288 NFI 290
           +++
Sbjct: 285 DWM 287


>gi|194292760|ref|YP_002008667.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193226664|emb|CAQ72615.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 306

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 135/288 (46%), Gaps = 13/288 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GS + AA  L LS +  S+++  LE E+G++L +R  R L +T +G+ L   
Sbjct: 9   LFLRVLDLGSISAAARSLDLSVAVASQRLQRLERELGVRLLHRTTRRLHVTPEGAVLAEQ 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   LE     L+++    +G LR+ T+   G+  +   L EFL  +P + + + L 
Sbjct: 69  GRALVDDLEALGASLRQAGTGITGTLRVTTSSSFGRLYVSPLLPEFLARHPGVSLSVNLS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+     D AIR+   +  S+L+ R+L        A+P YL+    P + Q+L +H
Sbjct: 129 DHVLDLVSAGFDLAIRI-GALDDSALVARRLANNRRLLCASPDYLRRRGMPRTPQDLARH 187

Query: 190 N-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLP 245
           + L+  G    +  +D   L   D   GE  +     ++ N+   +    + G GIAL  
Sbjct: 188 DCLLLVGS---QGRQDVWRLG--DGAGGEIAVRVRGRIEANTGELLSDAALAGFGIALHS 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV+++ D       +Y   P+      +++AF +F+
Sbjct: 243 AWHVCADLRAGRLVQVLPDYPLADTGIYAVMPQRRLVPPRVRAFVDFL 290


>gi|209520361|ref|ZP_03269125.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499193|gb|EDZ99284.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 304

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 129/289 (44%), Gaps = 8/289 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + ++L +F  V  +GS + AA +L L+++ +S  I  LE EVG  L  R  R L++TE
Sbjct: 6   NVNLNRLAIFVAVIDAGSLSAAAARLGLAKTMVSTHIQRLEAEVGASLLVRTTRRLSVTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  + ++    E     L   +    G LR++   D G  ++   L E    +P 
Sbjct: 66  AGRAFYDASVKILRTAEDALNALGGETSPVRGTLRVSAPNDYGTLVVAPALVELRHTHPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+  ++ +D+  D  D AIRL + +  S+    KL +      A+P +++    P 
Sbjct: 126 VDVELLSSDRYVDLIADGIDVAIRLGR-LADSNYRAVKLGSFVKWLVASPEFVRTWGVPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
           +   L+         L      D   L  VD      R  S L+VN+  +     + G G
Sbjct: 185 TPAALEALPYCALSVLPHPLTLD---LRHVDGKTASVRCASALRVNTADACRAATLAGGG 241

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I LL D+ + ++     L+R++ +  +   ++   +P       K++A 
Sbjct: 242 IGLLTDFSISEDVEAGRLIRLLPEWASAPASIQAVFPPTSHPPAKVRAL 290


>gi|115358194|ref|YP_775332.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283482|gb|ABI88998.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 323

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 119/253 (47%), Gaps = 7/253 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  + G TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F + +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVANTGGALSGHVRIGSTEGFGCFFLAPQLARFRVAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +   ++  KL    +  YA   YL N    
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATRDYLANHAPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  +++ D +    E    L  ++R +     + L+  S ++ +   + G  
Sbjct: 190 TCTDDLARHAFVSYVDDLAFSSE----LLYLERAV-PGATAGLRTTSVIAQVFAALQGGA 244

Query: 241 IALLPDYIVKDNP 253
           +A+LP ++    P
Sbjct: 245 LAILPCFMAATQP 257


>gi|330816178|ref|YP_004359883.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327368571|gb|AEA59927.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 318

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 20/254 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+A  GS+T AA +L +S++++S +I+ LE   G+ L  R  R + LTE G 
Sbjct: 10  WAHLHWLTVLADQGSYTAAAGRLGVSKAAVSLKIAELERAAGVPLVQRTTRSVRLTEAGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L   T  +Y ++  +   +++++    G LR++  + L +  L   L EF   +P+++I
Sbjct: 70  HLVDETRPLYERIAQSFSGVRDTAEVVRGSLRVSAPVALARQQLVPRLAEFRRRHPEVRI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ + ++ +  D AIR       + +  +   T+ +   A P YL     P    
Sbjct: 130 QLDVSDRLVSLATEGYDLAIRHSASAPETHVAWQLCRTVSL-LVATPAYLAARGRPGHPD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-----------LATVDRPIGEPRISCLQVNSYLSIMQ 233
           EL  H+ + +    P+  +   W            A V  PI  P       N+   +  
Sbjct: 189 ELAGHDCLFY----PRSHDSAAWTFERAGTRRQRAARVTVPIAGP----FCANNSEVLRD 240

Query: 234 YCVLGSGIALLPDY 247
             +   GIALLPD+
Sbjct: 241 AALDDLGIALLPDF 254


>gi|229522420|ref|ZP_04411836.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
 gi|229340405|gb|EEO05411.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
          Length = 312

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P+   +
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPIHPTD 189

Query: 186 LDKHNLITFGD 196
           L +H+ +   +
Sbjct: 190 LAEHDCLYLAE 200


>gi|209694280|ref|YP_002262208.1| DNA-binding transcriptional activator GcvA [Aliivibrio salmonicida
           LFI1238]
 gi|208008231|emb|CAQ78376.1| glycine cleavage system transcriptional activator [Aliivibrio
           salmonicida LFI1238]
          Length = 302

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 133/303 (43%), Gaps = 31/303 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NSLRVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQG 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++  L     ++ E S K  G L I+         L   L +F    PDI ++
Sbjct: 69  YFLDIKEIFSSLSEATDKVLERSAK--GALTISLPPSFAIQWLVPRLSDFNQKEPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + D     +  D AI   R   P ++   L Q +L+ +      +P  L N +   
Sbjct: 127 IKAVDMDEGSLTEDVDVAIYYGRGNWPGLRVELLYQEQLLPL-----CSPQVLLNEKPLA 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS------YLSIMQYC 235
           +I +L  H L+   D   K  + F         + +  +  + VN          ++Q  
Sbjct: 182 TIDDLRFHTLLH--DTSRKDWKLF---------VKQFELQGMNVNQGPIFSHSTMVLQAA 230

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G GIAL  + + +   D   LV   E+++      Y    E   +TG++  FR ++  
Sbjct: 231 AHGQGIALGNNVLAQPELDAGRLVAPFEELLISKNAFYLVCNEKQADTGRIATFREWVLS 290

Query: 293 KAR 295
           KAR
Sbjct: 291 KAR 293


>gi|226944668|ref|YP_002799741.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
 gi|226719595|gb|ACO78766.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
          Length = 300

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 15/285 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  + R  SF  +A +L ++ S++S  +  LE+ +G+KL  R +R +  T+ GS L 
Sbjct: 12  LNVFMTIVRRRSFRQSAVELGVTTSALSHAMKNLESRLGVKLLNRTSRSVVPTQAGSALA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               + +  +     EL      P G+LR+    D  + LL   L  F   YP++Q+++ 
Sbjct: 72  ERLEQGFQTIAEALAELDTHRDAPVGRLRLNVPRDASRLLLGPVLPGFFARYPELQLEVA 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +DI  D  D  IR    +    +       +     A+P YL +   P S ++L 
Sbjct: 132 VEDRMVDIVADGFDAGIRYGGTVPRDMIAMPLTGELRWIVVASPDYLSHHGRPRSPEDLL 191

Query: 188 KHNL--ITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +H    I  GD  P     + W L    R I       L  N    ++Q  + G G++  
Sbjct: 192 RHQCMRIRLGDNTP-----YKWELGDAPRAIHLDVPGSLGANETDILLQATLDGLGLSYC 246

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVY---FC--YPEALKNTGKLK 284
            +  V +     R+  +V+ P ++     FC  YP   ++   L+
Sbjct: 247 LELRVAEELRSGRL--EVVLPEWSSMGPPFCMYYPSRRQSQPGLR 289


>gi|269965396|ref|ZP_06179516.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|269830042|gb|EEZ84271.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 309

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 139/297 (46%), Gaps = 26/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   +EL  E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 73  DQSIAMVNAAQQA-VELSAEDHAEPTGALTVAAPEAFLNSVLQPFVLPFLERYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + +ID+     D A +L  KP    +L+ +++   ++   A+P YL     P    E
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDKP--DENLVLKEISKTNLVLCASPDYLAKHGMPEHPTE 189

Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L++H+ I   +     +      E F+ +A   R           VN     +     G 
Sbjct: 190 LEQHDCIYLAENDKDNIWSFFKEEAFHSIAVSGR---------YAVNHSQMRLNGVKSGL 240

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  D+++KD      +V ++ D +  S     +   Y +      +L+ F +F+
Sbjct: 241 GIGIFHDFVIKDALEQGEVVEVLPDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFV 297


>gi|295690757|ref|YP_003594450.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295432660|gb|ADG11832.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 289

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 126/288 (43%), Gaps = 16/288 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L ++Q++IS Q+ GLE  +G  LF R  RGL LT++G  
Sbjct: 9   NALRAFEASARHLSFTKAAIELCVTQAAISHQVKGLEARLGATLFRRLPRGLALTDEGLA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E + +L+ T    +   V     + +  T  +G   L   L  F   +P + ++
Sbjct: 69  LLPSVRESFDRLDDTLARFEGGRVTEVLSVGVVGTFAVG--WLLPRLPAFREAHPFVDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N   D++ +  DCAIR        +     L    M    AP   +    P   Q+
Sbjct: 127 LFTNNNRADLAGEGLDCAIRFGDGAWHGTEAA-PLFAAPMSPLCAPAVAERLSGP---QD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL- 244
           L +  L+       +  +  +W A     +  P I     +S   +++  + G G+AL  
Sbjct: 183 LFRETLLRSY----RAADWPDWFAAAG--LSPPPIRGPVFDSSWVMVEAAIQGLGVALAP 236

Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD  ++D     LVR  E +   +   +  + ++   +  LKAF  +I
Sbjct: 237 PDMFMRDLAQGRLVRPFE-IEVGAGRYWLTWLKSKAPSPALKAFLAWI 283


>gi|227329781|ref|ZP_03833805.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 305

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 133/295 (45%), Gaps = 10/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +   GSF+ AAE+L L ++++S  I  LE  +G++L  R  R + +T++G   +
Sbjct: 11  MRVFVRIVELGSFSRAAERLTLPRATVSNTIKQLEARLGVRLLQRTTRQVQITDEGRVYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++E       +   +P GK+R+     L + ++   L EF   YP + + L 
Sbjct: 71  ERCLQLLAEIEEIDTLFTQQKQQPIGKVRVDMPHSLAREIVVPALGEFYARYPQVTLMLS 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  I++  +  DC +R  +     +L  R L ++     A+  YL     P S+ EL 
Sbjct: 131 ANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQVTCASADYLARYGVPRSLDELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +  L  +      +++  D  I       LQVN   + +     G GI   P  
Sbjct: 190 GHQMVGYFSLRTEYRYPLEFMSG-DECITRMLPGALQVNGTDAYIASARAGLGIIQAPRR 248

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            ++   ++  LV I+ ++  P   +Y  Y       G+  A R  +F++  D  F
Sbjct: 249 GLRPFLESGELVEILPEMPPPEMPLYVMY-----APGRFLAPRIRVFIEWLDELF 298


>gi|153834803|ref|ZP_01987470.1| D-serine deaminase transcriptional activator [Vibrio harveyi HY01]
 gi|148868781|gb|EDL67852.1| D-serine deaminase transcriptional activator [Vibrio harveyi HY01]
          Length = 313

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 93/172 (54%), Gaps = 6/172 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AAE+L ++ S+IS +I+ LE E+GI LF R  R +TLTE
Sbjct: 16  SFQLSKLHTFEVAARHSSFSLAAEELSMTPSAISHRINKLEEELGIALFTRSHRKITLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +++   +   ++L    +E++   V  SG+L I +     Q  L   L  F   +P 
Sbjct: 76  EGERIYLALNRTLNELNQEVMEVRNGEV--SGELTIYSRPSFAQCWLVPRLYLFKQKHPS 133

Query: 122 IQIQLILDNKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYA 169
           I++ ++  N++++      D AI    ++ + + S  L+  +++ +   AYA
Sbjct: 134 IELNILTGNENVNFQGYGIDAAIYFDEQIPEKLWSKELMSEEIIPVCTQAYA 185


>gi|150015407|ref|YP_001307661.1| LysR family transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901872|gb|ABR32705.1| transcriptional regulator, LysR family [Clostridium beijerinckii
           NCIMB 8052]
          Length = 324

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 118/264 (44%), Gaps = 28/264 (10%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L  F  +++  SFT AA+ L  +QSSI+ QI  LE+E+G+KLF R  + +TLT +G
Sbjct: 28  DFKQLNAFLTISKLQSFTKAADNLGYAQSSITTQIKLLESELGVKLFERIGKNITLTHEG 87

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL     ++       +  +  + V PSG L I     L    L   LKE+  LYP++ 
Sbjct: 88  KKLLPYAKQILKLSSAVKNAVLNTDV-PSGTLTIGAAESLCVLRLPEILKEYKKLYPEVD 146

Query: 124 IQLILDN---KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP-HYLKNCR- 178
           I L   N       ++ +  D A  L   I S+  I    +   M   A P H L N + 
Sbjct: 147 ISLKFGNCAEFKYFLNDNIIDVAFSLGVKINSAEFISEIEIPEPMLLLAYPGHPLINKKE 206

Query: 179 --------EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
                   EPL + E+      T  +++  C               +P ++ ++  S  +
Sbjct: 207 VFPKDIESEPLILTEMGCSYRATLENILNSCNI-------------KPNVA-IETGSVQA 252

Query: 231 IMQYCVLGSGIALLPDYIVKDNPN 254
           I Q+ + G GI LLP   V D  N
Sbjct: 253 IKQFTMSGLGITLLPKVAVDDEIN 276


>gi|119387300|ref|YP_918334.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377875|gb|ABL72638.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 322

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 19/289 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     +AR G+F  AA +L +S +++S  I+ LE  +G++LF R  R ++L++ G +  
Sbjct: 31  LEAVLAIARRGTFRAAAIELGMSTTALSHAIARLEAGLGVRLFNRTTRSVSLSDAGRQFV 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++      ++     PSG LRI  +   G+ ++   + +FL  +P +Q+ L+
Sbjct: 91  ASVSPALAEIRGAMDSVRAQGQTPSGMLRINASAVAGREIISPLVLDFLRRHPRMQVDLV 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYLKNCREPL 181
            + + +DI  +  D  IR      +  L+ R ++ + +         A P +L +   PL
Sbjct: 151 TEERLVDIVAEGFDLGIR------TGDLVPRDMIALPLGKPQRYAVVATPAWLADRPLPL 204

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240
              +L  H+ I     +P   E F W       + +  +    +    +I +  VL G+G
Sbjct: 205 VPADLLAHDCIRV--RLPN-RELFRWYFERQGEVVQIDVRGRLILDEAAIARAAVLEGAG 261

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I       V ++     L+R++ED   P       YP     +  L AF
Sbjct: 262 IGFFIKQNVAEDIAAGRLIRLLEDWTPPRPGFCLYYPGRRNPSAGLTAF 310


>gi|322831573|ref|YP_004211600.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166774|gb|ADW72473.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 306

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 133/301 (44%), Gaps = 29/301 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L L+E+G  
Sbjct: 9   NSLRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLSEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F   YP I ++
Sbjct: 69  YYLDIKEIFSALNEATRKLQARSAK--GALTVSLPPSFAIQWLVPRLSGFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CRE 179
           +   +++ D   D  D AI   R   P     L   +L   ++    +P  L      +E
Sbjct: 127 IQAVDREEDKLADDVDVAIFHGRGNWP----GLRAERLYAEYLLPVCSPSLLMGDNPLKE 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCV 236
           P    +L  H L+             +WLA   + +G  +++  Q    +    ++Q  V
Sbjct: 183 P---ADLSHHTLL-------HDASRRDWLAYT-KQLGLQQVNVQQGPIFSHSAMVVQAAV 231

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIAL+ + + +   +   LV    +V+      Y    ++    GK+ AFR +I  +
Sbjct: 232 HGQGIALVNNVMAQTEIEAGRLVCPFSEVLISKNAFYLVCHDSQAELGKIAAFRQWILAR 291

Query: 294 A 294
           A
Sbjct: 292 A 292


>gi|288963007|ref|YP_003453301.1| HTH-type transcriptional regulator [Azospirillum sp. B510]
 gi|288915273|dbj|BAI76757.1| HTH-type transcriptional regulator [Azospirillum sp. B510]
          Length = 300

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 86/186 (46%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     VAR   F  AA +L +S+S++S  I+ LET +G++LF+R  R + LT+ G + 
Sbjct: 8   ELEAVQAVARHRGFRAAAAELGMSRSALSHAIAALETRLGVRLFHRTTRSVALTQAGEQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              T+     +      L E    P+G LRI  +    + +++  + E+L  YP + + +
Sbjct: 68  VADTAPALRDIRAAIDRLSEHRTAPAGTLRINGSSGAARMIMKPVILEYLRRYPGMTVDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + + K +DI ++  D  IRL + +    +       +       P Y      P +  +L
Sbjct: 128 VTEGKLVDIVLEGFDAGIRLAEQVPQDMIAVPLGPDLRFAVVGTPDYFAGRSMPRTPADL 187

Query: 187 DKHNLI 192
             H  I
Sbjct: 188 AGHRCI 193


>gi|90409724|ref|ZP_01217741.1| putative transcriptional regulator protein [Photobacterium
           profundum 3TCK]
 gi|90329077|gb|EAS45334.1| putative transcriptional regulator protein [Photobacterium
           profundum 3TCK]
          Length = 293

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 132/278 (47%), Gaps = 19/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F  V + GSFT AA  + L ++++SR+I  LE  +  +LF+R  R L L++ G  
Sbjct: 4   DDLKLFTTVVQLGSFTVAANAMDLPRANVSRRIGELEKSLNAQLFFRTTRKLRLSQHGEA 63

Query: 66  LHR---VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            ++      E Y K   T ++L +   +P+GK+++    +     +Q  L +F  +YP+I
Sbjct: 64  YYKEVLAVLEAYQKANDTLLKLDD---RPAGKVKLGLLPE-SDEAIQHILYQFQDMYPEI 119

Query: 123 QIQLILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + +   N    D+     D AI   K +  SS + R +  +     A+P Y++    P 
Sbjct: 120 DLDIRSTNSCYTDMYEQGLDLAIHAGK-LHDSSFVARHIAQLGRMLLASPSYIEQYGMPN 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSG 240
           ++ EL  H  I +    P    + NW    D    E +++    ++ +  ++  +L G G
Sbjct: 179 TLAELTTHQCICY--RWPDGTLEDNW----DLIDEEVKVTSRLASNNIGFIRRAMLDGRG 232

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPE 275
           I  LP  +     ++  LVR++    + +  V+  YP+
Sbjct: 233 IGFLPPLLALASMESGALVRVLPQYQSRADDVWLLYPD 270


>gi|290509496|ref|ZP_06548867.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289778890|gb|EFD86887.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 301

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 120/275 (43%), Gaps = 7/275 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +R+F  V   GS + AA  L + Q ++S +I  LE  +G +L  R+ R ++LT  G+
Sbjct: 4   FSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTHSGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +       E   + + E +    GK+RIA     G++LL   L +    +P++Q+
Sbjct: 64  VFYERSKTAVQAAEHA-LSVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPELQV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +I +++ ID   +  D ++RL   +     + R L  +     A+P  L     P + +
Sbjct: 123 DVIFNDRVIDPVTEGVDLSLRLGD-VSEGFFVARPLGAVRRVLVASPALLAKMGHPDTPE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +  +       +          +A+ D+ I  P     Q   + S++ + + G  I +L
Sbjct: 182 AMTDYPFAAVSGVF--ASNRIQLIASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
              + +    +  L+ I+     P F+ +  +P A
Sbjct: 240 QSPVCRKEMADGALIPILSHYPIPPFSAWLLHPPA 274


>gi|289628190|ref|ZP_06461144.1| fused ISPsy20 transposase IstB/transcriptional regulator LysR
           family protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651338|ref|ZP_06482681.1| fused ISPsy20 transposase IstB/transcriptional regulator LysR
           family protein [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330869150|gb|EGH03859.1| fused ISPsy20 transposase IstB/transcriptional regulator LysR
           family protein [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 315

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 13/273 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLAVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHIRMGCTEGFGSFFITPQLSHFLDSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +     
Sbjct: 131 ISLDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQAYLDSHTAIE 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVLGS 239
              +L  H  I++ D +    E   +L+ +  P  +      Q+ S   I QY   + G 
Sbjct: 190 QKADLSGHVFISYVDDLAFSSE-LLYLSNL-LPNAQA-----QLRSTSVIAQYTAALQGR 242

Query: 240 GIALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
            +A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 243 ALAILPCFLAAQDPRLLPVLAEEVNITRQFWMY 275


>gi|317046594|ref|YP_004114242.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316948211|gb|ADU67686.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 298

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 115/244 (47%), Gaps = 8/244 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V    SF+ AA  L +S+S +SR+I+ LE  +GIKL  R  R + LTE G   +  
Sbjct: 12  LFARVVERQSFSEAARTLGVSKSYVSREIARLEVRLGIKLLQRTTRKVALTELGQAYYPF 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + +  ++      +Q+    P+G +R+   +  G   +   L  F+  +  I + L L 
Sbjct: 72  CTRLLDEMHRADAFVQQVHQLPTGNVRLQAPVTFGCQCVVPTLNRFIRRHIHINVDLELT 131

Query: 130 NKDIDISMDYADCA--IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++  +    +AD A  IR R P    +   R+L TI    YAAP YL         ++L 
Sbjct: 132 DRVSEDPACHADVAIVIRARAP---ETPDYRELSTIDWGLYAAPDYLAAHPPIDHPEKLT 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+L+ F    P       +     R   + R S  + N+ ++++   + G+GIA LP Y
Sbjct: 189 RHDLLLFHG--PAHTAALPFRRDKQRLALDVR-SRFRANNSMALLNAALAGTGIAYLPAY 245

Query: 248 IVKD 251
           + ++
Sbjct: 246 MTRE 249


>gi|237801829|ref|ZP_04590290.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024687|gb|EGI04743.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 315

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 131/292 (44%), Gaps = 11/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           S +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T
Sbjct: 10  SLNWDDLKFFLEVARTRKVSSAARRLAVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSSVALSGHVRVGCTEGFGSFFITPQLSHFLDSYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P      +  KL    +  YA   YL +    
Sbjct: 130 SISLDILPLPHFISLSKREADIVIALERP-DHGPYVCCKLCDYSLRLYATQDYLDSHPPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVLG 238
               +L +H  I++ D +    E   +L+ +  P  +      Q+ S   I QY   + G
Sbjct: 189 QRKADLAEHLFISYVDDLAFSSE-LLYLSNL-LPNAQA-----QLRSTSVIAQYTAALQG 241

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +A+LP ++   +P L+ ++ + +  +   +    E L+   ++    ++I
Sbjct: 242 RALAILPCFLAAQDPRLLPVLAEEVNVTRQFWMYCREDLRKLKRITLLWDYI 293


>gi|331007165|ref|ZP_08330380.1| Transcriptional regulator, LysR family [gamma proteobacterium
           IMCC1989]
 gi|330419033|gb|EGG93484.1| Transcriptional regulator, LysR family [gamma proteobacterium
           IMCC1989]
          Length = 285

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 134/293 (45%), Gaps = 26/293 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR GSFT AA++LH +Q +ISRQ++ +E ++ + LF R  + L L++ G    
Sbjct: 2   LLAFEAAARLGSFTKAAKELHQTQGAISRQVAAMEHQLDVCLFERQHKTLVLSDAG---Q 58

Query: 68  RVTSEVYHKLETTQ-IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           R  +E+   L   +   L   S  PSG L +A     G   +   L  FL  +P+I +  
Sbjct: 59  RYANEIRPALGIIRNASLNAMSNVPSGLLNLAILPTFGTRWIMPRLPSFLTQHPNINVNF 118

Query: 127 ILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +      D + +    AI          Q + L+  + V +    +   H ++ C + +S
Sbjct: 119 VTRLAPFDFAQENLHAAIHYGHGDWAGAQCTFLMHEQTVPVCSQKFLDQHPMQ-CAKDIS 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q L    L +      K +E    ++ V     EP +S  +++   ++ Q  V G G+A
Sbjct: 178 EQPLL--GLASRDSAWRKWLEYHQVISHV-----EPAMSFEEIS---TLTQAAVSGLGVA 227

Query: 243 LLPDYIVKDNPNL----VRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290
           LLP ++++  P L    + I+ D   PS+  Y+   P    +   +KAFR ++
Sbjct: 228 LLPTFLIE--PELSSQQLVILNDTPAPSYLGYYLVTPLVYADYAPIKAFRQWL 278


>gi|228952781|ref|ZP_04114853.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229079600|ref|ZP_04212136.1| Transcriptional regulator, LysR [Bacillus cereus Rock4-2]
 gi|228703714|gb|EEL56164.1| Transcriptional regulator, LysR [Bacillus cereus Rock4-2]
 gi|228806900|gb|EEM53447.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 300

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 146/314 (46%), Gaps = 41/314 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVLNYLLPLTILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLRNELDIGITFL-PVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    + FN+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTV--------YFC-----YP 274
           +Q    G GI +LP    D++   N   ++I     TP+  +        Y C     + 
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIYRKDKYMCAATREFI 288

Query: 275 EALKNTGKLKAFRN 288
           E LK+T  +++F+N
Sbjct: 289 EQLKST--VRSFQN 300


>gi|229145007|ref|ZP_04273402.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-ST24]
 gi|228638456|gb|EEK94891.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-ST24]
          Length = 300

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 147/314 (46%), Gaps = 41/314 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKVLLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    +  N+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKLNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTV--------YFC-----YP 274
           +Q    G GI +LP    D++  +N   ++I +   TP+  +        Y C     + 
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNNNIQAIKIEKP--TPTIEIGLIYRKDKYMCAATREFI 288

Query: 275 EALKNTGKLKAFRN 288
           E LK+T  +++F+N
Sbjct: 289 EQLKST--VRSFQN 300


>gi|153828077|ref|ZP_01980744.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148876486|gb|EDL74621.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 312

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAANKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPTGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P+   +
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPVHPTD 189

Query: 186 LDKHNLITFGD 196
           L +H+ +   +
Sbjct: 190 LAEHDCLYLAE 200


>gi|187478411|ref|YP_786435.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115422997|emb|CAJ49527.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 317

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 21/248 (8%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +  V+A + SFT AA++L +S+S IS ++  LE  +G+ L  R  R +  TE G+ L   
Sbjct: 1   MLTVLADTRSFTAAAQRLGVSKSLISLRMKALEQALGVSLLLRTTRSVRPTEAGALLIDR 60

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +      LE +  E++  +  P G+LR+   + LG+  L   L      YPDI +++ L 
Sbjct: 61  SRPALDTLEASFGEVRNLTRAPRGRLRLTAPVALGRQHLGPLLARLGHAYPDIALEVYLS 120

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +++  +  D A+R    + S + + ++L     +  A+P YL     P    EL +H
Sbjct: 121 DRFVNLRQEGYDFALRHADQV-SDAYVSKRLCATRAYLVASPEYLARQGRPTHPSELSRH 179

Query: 190 NLITF-GDLIPKCMEDFNW---------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + + GD       +  W          A   +P G      L +N+   + +    G 
Sbjct: 180 RCLLYRGD-----ERNPQWSFSPRHGRGAAVHVKPTG-----SLTINNSELLRESAGNGL 229

Query: 240 GIALLPDY 247
           GIA++PD+
Sbjct: 230 GIAMVPDF 237


>gi|90411195|ref|ZP_01219208.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90328041|gb|EAS44362.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 294

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 131/294 (44%), Gaps = 25/294 (8%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  +  SGS + A  +L+ S +++S  ++ LE +   +L  R  R   LT +G   ++
Sbjct: 8   RTFIEIVHSGSISAAGRRLNASPANVSAVLARLEKQYDARLLSRTTRNQQLTYEGEHFYQ 67

Query: 69  V-------TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
                     E+ + L   Q +LQ       G + I+ T D G+N+L   L EF+ LYP 
Sbjct: 68  FCLLAADQEDELLNHLSKQQ-QLQ-------GSITISCTCDFGRNVLVPLLDEFMALYPQ 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L +K  D+  D  D AIR    ++ S+L+ R+L   H    A+P YL     P 
Sbjct: 120 LSIHLHLTDKISDLVKDSIDVAIRF-GALKDSNLVARRLADNHRVLVASPEYLAQHGHPQ 178

Query: 182 SIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           S++EL  H  +    LI +  E    W       I    + +    N+   +  + +   
Sbjct: 179 SVEELADHACL----LISREGETQAEWQFNKANQIYSVAVNAAFSSNNGEVVKHWALTSK 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+   + VK    +  LV ++++       VY  +P    +  ++ A  +F+
Sbjct: 235 GIAMKSIWDVKPALADGTLVSVLDEFRQDDGAVYAVFPNRKFSPQRITALIDFL 288


>gi|33596799|ref|NP_884442.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33600569|ref|NP_888129.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33568168|emb|CAE32081.1| Putative LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
 gi|33573500|emb|CAE37487.1| Putative LysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 314

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 133/292 (45%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LR+F      G+F+  A ++  + + +S++I+ LE ++G +L  R+ R L +TE G
Sbjct: 21  DLTTLRIFVRTVEIGNFSEVARRIGANPAMVSKRIANLEHKIGQRLLNRNTRRLMVTEAG 80

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+        +L+    E+     K SG LR+     LG+ ++   L +FL   P + 
Sbjct: 81  QRLYDHCMRALIELDQAAEEMSNMQDKASGLLRMTAPAMLGEAVIAPQLPQFLQQNPLLS 140

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +    + +D+     D A+R+   +    L+  KL         AP Y++    P   
Sbjct: 141 LDINFSLEKVDLFKARIDVAVRIADSV-DPGLVAIKLAPYRRVFCVAPQYIEAKGTPELP 199

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGI 241
            +L  HN LIT G ++     +  W   +D  IG  P    L  ++  +    C+ G G+
Sbjct: 200 ADLMDHNCLITRGSVL-----NTRWPVRLDGEIGNVPVKGNLVTDNGHAARLACLAGLGV 254

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + P +++ ++     LV ++ D +  + +VY    +    + KL+   +F+
Sbjct: 255 MMAPRWLLDEDIRAGRLVEVLADYVPDNRSVYALLLQRTGFSAKLQIAIDFL 306


>gi|299067524|emb|CBJ38723.1| putative transcription regulator protein, Lys-R family [Ralstonia
           solanacearum CMR15]
          Length = 318

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 126/287 (43%), Gaps = 9/287 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AA++L L +SS+S  +S LE ++G++LF R  R L LT+ G
Sbjct: 5   DWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGVRLFERSTRRLRLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +     L   + E +  +  ++
Sbjct: 65  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAARQLAEVVLELMREHAGLR 124

Query: 124 IQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ +  + +D ++  Y       R+P+  S L+ +++  +      AP  L     PL+
Sbjct: 125 IEVDVAPRQVDPLAQGYDIMLTVPREPLPDSGLVAQRVFDLRRAVVVAPALLGRL-GPLT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 + LI +  L      ++ + A     +  P    ++ ++    +Q  V G G+A
Sbjct: 184 ----HPNQLIDWPCLGLSSESEWQFRAPGGETLNLPLDFRMRTSNSELRLQAAVAGLGVA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +      +      L  ++    +P   VY  +P       K+K F
Sbjct: 240 RITSAFADELIAAGALREVLAGFRSPPMRVYAVFPGRRLMPAKVKVF 286


>gi|104781563|ref|YP_608061.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110550|emb|CAK15258.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 317

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 4/144 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W  L VF   AR  SFT  AE+LH++  ++S+Q+  LE  +G +LF R ARG+ LT +
Sbjct: 10  FVW--LHVFSCAARHLSFTRCAEELHITPGAVSQQMRLLEERLGFRLFLRRARGVELTAE 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +  +E Y  +E   + L    ++  G LR+ +        L   L  F   YPDI
Sbjct: 68  GQRLAQTVAEAYGGIEAELLRLDAGEIR--GTLRLRSIPSFLAKWLTPRLPRFQQRYPDI 125

Query: 123 QIQLILDNKDIDISMDYADCAIRL 146
            ++L+ ++ +  +  D  D AI L
Sbjct: 126 ALRLVAEDSNQALHPDDFDLAIDL 149


>gi|84385265|ref|ZP_00988297.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84379862|gb|EAP96713.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 298

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 29/286 (10%)

Query: 3   FDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++++ LE  +G +L  R  R +  TE
Sbjct: 1   MDWILNVKSYVRVVEEGSFNGAARKLNTTSSAISKRVNWLEERIGTQLLKRTTRSINQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    +     ++   E +  +  P+G L+I  TI +G   L   + +FL  YPD
Sbjct: 61  AGALFYLRAKDQLDNWQSIIDETRSVNQTPAGLLKIGATIAVGSKFLVQYMDDFLEKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++QLI         +       R  + + S S  +  L       YAAP YL     P 
Sbjct: 121 IKVQLITTTPGQLPELGLDLVISRELEQLNSLSFKKTPLFEHKASFYAAPSYLAKHGYPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVL- 237
           + Q+L++HN + +G                +RP  E  ++  Q   +N   +      L 
Sbjct: 181 NEQDLEQHNSLIWG----------------ERPTREVTLTKGQRITLNGNFATTNPEALF 224

Query: 238 -----GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
                G G+ L    ++K++     LV ++ ++      VY  YP+
Sbjct: 225 HAAKRGMGVLLTIKAMIKEDLKQGTLVPVLPNITADEVMVYAYYPK 270


>gi|291523654|emb|CBK81947.1| transcriptional regulator, LysR family [Coprococcus catus GD/7]
          Length = 295

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 16/292 (5%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+FY VA+ GS + AA  L++SQ +IS+ IS LE E+   LF R +RG++LTE+G  L  
Sbjct: 9   RIFYTVAQCGSISAAARHLYISQPAISKSISNLENELQTHLFERTSRGVSLTEEGQLLFH 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             S+ +H LE  + EL        G L I  +  L +  L   LK F+  YP I I +  
Sbjct: 69  HVSDAFHSLEAGEAELSRIRDMGLGHLTIGVSTTLCRYRLLPYLKTFIAQYPHISINISC 128

Query: 129 D--NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              N  +D+  D +     + KP  +  +       I       P+YL N +    +  L
Sbjct: 129 QSTNHTLDMLRDGSIDLGLVAKPEDTGHISFVSQGRIEDVFVCTPNYLNNLQMRTQVSGL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA- 242
           D  N  T   L+ K      +   +D  + E  I   + +++ +   ++++   G GIA 
Sbjct: 189 DLLNAGTLM-LLDKANASRQF---IDYFLEENHIHASNLIEITTMDLLIEFARTGLGIAC 244

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFI 290
           ++ D++  D  +   ++ ++ TP       + F + +   +   L AF +F+
Sbjct: 245 VIKDFVADDLKS--GLLVEIPTPQAIHPREIVFAWKKGRSSHRFLNAFIDFV 294


>gi|221214364|ref|ZP_03587335.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221165621|gb|EED98096.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 327

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 128/287 (44%), Gaps = 12/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE  +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEHQSFRRAAHHLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTEAGVRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  + +++ +P G LR+  +  L    L   L  F   YP++++Q+ 
Sbjct: 67  DGCRALLEEFDHLEASVAQATHEPGGTLRVVASGLLSPGALTPLLGRFRHRYPELRVQMT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  I        + +LI + L      A A+P YL+   EP +  +L
Sbjct: 127 IAEAPLDVLDAGYDVGIVTGDRFDGNPALIAQALAPNPFVACASPAYLERRGEPRTPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H+ +    L P        L   D  +     R +C  VN    +    V GSGIA+L
Sbjct: 187 PRHDWVA---LAPHQHPGAWRLVGPDARVHTVTVRPAC-TVNQLALVHAAAVAGSGIAML 242

Query: 245 PDYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           P++ V    D+  LVR++    +  P   +   YP       + ++F
Sbjct: 243 PEHCVADAIDSGTLVRLLPGYRIDDPHTQLSLVYPNRQFVPARTRSF 289


>gi|89902769|ref|YP_525240.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347506|gb|ABD71709.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 299

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 133/275 (48%), Gaps = 15/275 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +  +GS + AA +    +S +SRQ++ LE ++G +L  R  R LTLTE G  + 
Sbjct: 7   LTTFSAIVNAGSISAAATRQGCGKSVLSRQLARLEADLGARLILRTTRKLTLTEVGKVVL 66

Query: 68  RVTSEVYHKLE-TTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               ++   L    QI  Q +  V+  G LR+A    LGQ  L   + EF  L+P +++ 
Sbjct: 67  LQAQQIDRALSNVAQISGQFQQEVR--GPLRVACPRPLGQRHLVPLITEFTQLHPLVELT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+++++  D+  +  D AIR+   +  S+L+ RKL        AAP YL     P   Q+
Sbjct: 125 LLVEDRMSDLIAEQIDVAIRVAH-LDDSTLVARKLADNPRVLVAAPAYLARAGVPAVPQD 183

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           L +H  +    L  +    F+ W   +D      R+   +++N  ++++     G+G+ +
Sbjct: 184 LAQHECL----LWTRDNRVFDEWTFMLDDTTTLVRVQGRIRINDGMALVATACAGAGVTV 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSF-TVYFCYP 274
           L   +V+    +  LV ++     PS  ++Y  YP
Sbjct: 240 LDRLLVEQELASGALVELLPAYRLPSGPSLYAVYP 274


>gi|83952005|ref|ZP_00960737.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
 gi|83837011|gb|EAP76308.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
          Length = 309

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 127/299 (42%), Gaps = 31/299 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRV     R G+     + L L+QS++SRQ+  LE ++G+ LF+R  R L L+       
Sbjct: 14  LRVLETFDRLGTTIATGDALGLTQSAVSRQLKTLEEQLGVALFHREGRHLVLSAAAQAY- 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                       TQ  ++  +    G+L +A     G   L   L EF   +P++ I L 
Sbjct: 73  -AAEAREALARLTQAGMRLRAPVDHGRLNLAILPTFGMRWLVPRLPEFARAHPEVTINLS 131

Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKN------- 176
              +  + + +  D AI          Q+  L+Q +++ +     AAP  L N       
Sbjct: 132 TRLQKFNFASEGIDAAIHFGDADWPGTQALRLMQEQVLPV-----AAPDLLGNLLAGMKP 186

Query: 177 --CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               EP ++ +L   ++ T  +  P       W A  D  +  PR++    + + +I+Q 
Sbjct: 187 DALPEPAALAQLPLLHIDTRPEAWP------TWFARHD--VAAPRLTGTVHDQFSTIIQA 238

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G G+ALLP Y+ +       LV +    +      Y  +PEA      L+AFR+++
Sbjct: 239 ALHGLGVALLPLYLAEPEIAAGRLVALAPHPVELPGAYYLVWPEARATDPALRAFRDWL 297


>gi|107026949|ref|YP_624460.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691854|ref|YP_837387.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896323|gb|ABF79487.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649854|gb|ABK10494.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 92/187 (49%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + V  +L+  ++E Q  + +P G LR+        N L   +  F   +P++++ 
Sbjct: 65  IYERCAAVLDELDALEVEAQTHTREPEGLLRLVAHTTAALNRLVPLIAGFKSAHPNVRLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  I +   + S S + R +  I +   A P YL+    P +  +
Sbjct: 125 VTLTERPVDLVGEGYDIGIVVPYMLTSESTVVRLVERIPVVIVATPAYLQAHARPETPAD 184

Query: 186 LDKHNLI 192
           L  H  +
Sbjct: 185 LANHPFV 191


>gi|323525658|ref|YP_004227811.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382660|gb|ADX54751.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 296

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 121/282 (42%), Gaps = 12/282 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+  R F  V  +GS + A   + L+Q ++ R I  LE+ +G+KLF R   G   T+  
Sbjct: 7   NWEWYRTFLTVLETGSLSAAGRTMGLTQPTVGRHIDSLESALGLKLFTRSFDGFAPTDAA 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + V                   G +R++ +  +G  +L   L      +P++ 
Sbjct: 67  LELKPYAASVAATSAALLRVASSHGSGVRGTVRLSASEVIGIEVLPPILATLRSEHPELI 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+L NK  D+    AD A+R+ +P Q  +L+ +++  I +  +A   YL     P S+
Sbjct: 127 IELVLSNKVDDLLHREADIAVRMLRPTQ-DALVAKRVGGIELGLHAHERYLAAHGTPKSM 185

Query: 184 QELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            EL  H LI F      I + ++ F        P+        + +S L+ +     G G
Sbjct: 186 DELAGHALIGFDHENAYIRRLLDQF--------PMFSRAALAFRADSDLAQLGAIRAGFG 237

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           I +    +   +  LVR++    +     +    E L+ + +
Sbjct: 238 IGVCQSALAARDEALVRVLRGAFSLKMDTWIAMHEDLRESAR 279


>gi|260466546|ref|ZP_05812735.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029695|gb|EEW30982.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 303

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 135/298 (45%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+F   +L+ F  VA  G+ + AA+ L +SQSS++  I  LE+++G++LF RH RGL +T
Sbjct: 1   MAFTIRQLQFFIAVAEQGTVSGAAQNLSISQSSVTEAIKELESDLGVELFERHPRGLNIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +  R  +++   +   +           G+L++  T  +   +L   L  +   YP
Sbjct: 61  HKGHQFLRHATKILADVSDARRSFSGEQAATGGRLQLGVTSLVAGYVLSDLLSRYRRAYP 120

Query: 121 DIQIQLILDNKDIDISM---DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYLK 175
            +++  I DN D    +      D A+ +   ++  + +Q +++ +  +    P  H L 
Sbjct: 121 GVEVSAIEDNGDYLEHLLIGGKLDIAVMVTSNLRDRTALQSEILEVSAYRLWLPLGHPLA 180

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
              + + I ++    LI     + +  E+   L T    IG       +  S  ++    
Sbjct: 181 GA-DIIGIGDIASEPLIML--TVDEIEENTGKLLTA---IGARPHVAFRTRSVEAVRSLV 234

Query: 236 VLGSGIALLPDYIVKD-NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G+G+ALLPD + +  +    RI    I+ S  V        + +G  ++ R+FI L
Sbjct: 235 ATGAGVALLPDLVYRPWSLEGDRIESRDISGSLPVVQVGMVWRRGSGLPQSARDFIGL 292


>gi|229514305|ref|ZP_04403766.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229348285|gb|EEO13243.1| transcriptional regulator [Vibrio cholerae TMA 21]
          Length = 312

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P+   +
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPVHPTD 189

Query: 186 LDKHNLITFGD 196
           L +H+ +   +
Sbjct: 190 LAEHDCLYLAE 200


>gi|172062982|ref|YP_001810633.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995499|gb|ACB66417.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 319

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 119/253 (47%), Gaps = 7/253 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  + G TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F + +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVANTGGALSGHVRIGSTEGFGCFFLAPQLARFRVAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +   ++  KL    +  YA   YL N    
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATRDYLANHAPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  +++ D +    E    L  ++R +     + L+  S ++ +   + G  
Sbjct: 190 TCTDDLARHAFVSYVDDLAFSSE----LLYLERAV-PGATAGLRTTSVIAQVFAALQGGA 244

Query: 241 IALLPDYIVKDNP 253
           +A+LP ++    P
Sbjct: 245 LAILPCFMAATQP 257


>gi|167621781|ref|YP_001676566.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351522|gb|ABZ74252.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 302

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 19/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  +G FT AA+ L + +++ S+ ++ LE  + I+L  R  R + +T +G+  +
Sbjct: 7   IKVFCRVVETGGFTRAADALDMPKATASKLVNELEAHLRIRLLNRTTRSVQVTSEGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    +L+          VKP G++ +  +  +   +L   L  F   YPDIQI L 
Sbjct: 67  ERISRWLRQLDDIDNAFDHERVKPQGRITVDASAWVANAILIPALPRFYDDYPDIQIDLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           + ++ + +  + ADC IR    +   +L+ R L        A+P YL+    P    +L 
Sbjct: 127 VSDRPVHLIRENADCVIR-GGHLADQTLVGRSLGASRWVTAASPSYLERYGTPSHPSDLG 185

Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H LI+     G       E       VD   G  R+S  + N++L+        +G+ 
Sbjct: 186 EGHQLISHQLASGRTTQFRFERDGKEVKVD---GVSRLSVNESNAHLAAGL-----AGLG 237

Query: 243 LLPDYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +L  +  K  P      LV I++D    ++  +  YP       +L+ F +++
Sbjct: 238 VLQSFEWKLRPALRSGQLVSILDDWRPSTYPFHVLYPPNRFMNTRLRVFIDWL 290


>gi|325168361|ref|YP_004280151.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064084|gb|ADY67773.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 303

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 136/305 (44%), Gaps = 27/305 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF VVAR  SFT AA +L +SQ+++S  ++ LE  VG+ L  R  R +  TE G +L 
Sbjct: 9   LAVFEVVARLQSFTKAASELGISQAALSYAMTQLENRVGVALLARTTRNVAATEAGLRLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    +E     LQ+     +G +R+ T       L++ NL  FL  YP +++++ 
Sbjct: 69  ETLRPALQNIEVELQGLQDMRSSVAGTVRLTTVQVAYDALIRPNLPGFLSTYPHVRLEVS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHYLKNCR-EP 180
           +++   D+     D  IR        SL+++ +V + +         A+P YL   +  P
Sbjct: 129 VNDSLADLVSLSFDGGIRF------GSLVEKDMVAVSLSKSSPTVIVASPDYLDRSKGRP 182

Query: 181 LSIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           L   ++  H  I +     G L    +E       V RP G+     L +++  +I    
Sbjct: 183 LDPADMQDHQCINYRFAGSGRLFHWPLEKKEVRLDV-RPPGQ-----LILDNGEAIRAAA 236

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G G+A L +  V ++     L R++ D + P       YP     +   +A+ ++I  
Sbjct: 237 LDGLGLAFLFEAQVAEDIAAGRLERVLVDWVKPLPGFSLFYPNRRHVSPAFRAWIDYIKG 296

Query: 293 KARDW 297
             RD+
Sbjct: 297 TNRDY 301


>gi|269963787|ref|ZP_06178104.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
 gi|269831467|gb|EEZ85609.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
          Length = 309

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 139/297 (46%), Gaps = 26/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   +EL  E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 73  DQSIAMVNAAQQA-VELSAEDHAEPTGALTVAAPEAFLNSVLQPFVLPFLERYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + +ID+     D A +L  KP    +L+ +++   ++   A+P YL     P    E
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDKP--DENLVLKEISKTNLVLCASPDYLTKRGMPKHPTE 189

Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L++H+ I   +     +      E F+ +A   R           VN     +     G 
Sbjct: 190 LEQHDCIYLAENDKDNIWSFFKEEAFHSIAVSGR---------YAVNHSQMRLNGVKSGL 240

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  D+++KD      +V ++ D +  S     +   Y +      +L+ F +F+
Sbjct: 241 GIGIFHDFVIKDALEQGEVVEVLPDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFV 297


>gi|311105495|ref|YP_003978348.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760184|gb|ADP15633.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           59 [Achromobacter xylosoxidans A8]
          Length = 310

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 132/301 (43%), Gaps = 25/301 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F   AR GSFT AAE L ++Q ++SR IS LE   G  L +R+A GLTLTE G +L
Sbjct: 10  ELHAFVTAARLGSFTRAAEVLCVTQGAVSRAISRLEAHFGQPLMHRNAHGLTLTETGRRL 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +        ++E     L+ +  +   +L ++T   L    L   L +F   +PDIQ+  
Sbjct: 70  YDGAQGPLQEIEALSAGLRANDRRL--RLTLSTVPTLASAWLVPRLSDFHARHPDIQLGF 127

Query: 127 ILDNKDIDISMDYADCAIRLRKP-----IQSSSLIQRKLVTI-HMHAYAAPHYLKNCREP 180
               ++ D S    D +I    P      Q+  +I R++V I H    AA         P
Sbjct: 128 AAYRRNEDFSGATPDASILSGMPEQWPGWQADYVIGREMVVICHPGRLAARRAQGLWDTP 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY--LSIMQYCVLG 238
                L    L+   + +   ++   WL+      G PR S    N +  +SI+   V+ 
Sbjct: 188 AG---LLGEPLLYHSNGVDNWVQ---WLSAA----GVPRASVQLANGFDQVSILVRAVMA 237

Query: 239 S-GIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             GIA+L   +V+D+    R+     E  I  +   + C P   ++   L  FR ++   
Sbjct: 238 DMGIAVLQRCLVRDDLQAGRVAAPFPELPIRIARGYHLCAPAQRRDHYALACFRQWLLET 297

Query: 294 A 294
           A
Sbjct: 298 A 298


>gi|299069642|emb|CBJ40914.1| putative transcription regulator protein LysR [Ralstonia
           solanacearum CMR15]
          Length = 309

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 136/288 (47%), Gaps = 17/288 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW+ LR    VARSGS   AA  L +S ++  R+I  LE  VG  LF R   G  LTE
Sbjct: 3   TLDWNDLRYLLAVARSGSAAGAARALGVSHATALRRIQALEQVVGSPLFDRLQTGYALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +   +       L  T+ E++  + + +G +R  TT  LG +L+   L  F   YP 
Sbjct: 63  SGRRFVAMGEAFERALLDTRREIEGQATELAGTIRFTTTDSLGYSLMPDILAAFRTRYPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++ + N  +D+    AD  +R+       S + R+LV +    YAA     + REP 
Sbjct: 123 ITVEMKVTNARLDLERREADVMLRV-TDAPPPSWVGRRLVRLDAALYAA-PAYLDGREPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++  LD         L+P        +A   R  IG  R++    +S+L + +    G G
Sbjct: 181 ALASLDW--------LMPNSPLGQGAVAEWLRARIGGARVAA-SADSFLVLRRLAERGLG 231

Query: 241 IALLPDYIVKDNP--NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +A+LP ++ +      L  + ED+  P +     +P+ L++ G++ AF
Sbjct: 232 VAVLPKFLARQRRLVWLEDVPEDLSVPLW--LLTHPD-LRHAGRVHAF 276


>gi|254693142|ref|ZP_05154970.1| Transcriptional regulator, LysR family protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 304

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 4/194 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   Y 
Sbjct: 60  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYS 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L+L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 120 DIEVRLLLSDHEVDIMSEGVDVAFKL-GVLENSNLRMRGIMNCERVVCAAPQYLERHGTP 178

Query: 181 LSIQEL--DKHNLI 192
            S + L  D+H+ +
Sbjct: 179 QSPEALLSDRHHCL 192


>gi|241666689|ref|YP_002984773.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862146|gb|ACS59811.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 296

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 119/257 (46%), Gaps = 16/257 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V  R  SFT AA++L +SQ+++SRQI  LET +G  LF R  RG+ LT  G+KL 
Sbjct: 11  LRSFEVAGRLESFTRAAQELFISQAAVSRQIRELETLLGEALFERRHRGVHLTASGNKLL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPS-GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            + +  + +++ +   L+E   +P+   L I+         L   L EF   +P+I + +
Sbjct: 71  AILTSSFDRIDES---LEEIRSRPARAALTISVEPSFAACWLVPRLPEFRERHPEIDVTI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPLSIQE 185
             D++ ++     A+ AIR    + +    +   L  + M   AAP  LK          
Sbjct: 128 DADSRLVEFRGGQAEIAIRHSASVTAWPRTESGHLADVRMVPVAAPALLKGG------PA 181

Query: 186 LDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSGIA 242
           +D+   +    L+ +   D  F W       I  P I+   V +    +MQ  + G GIA
Sbjct: 182 IDRPEDMLCHTLLHEETRDVWFRWFEMAG--IAMPEIARGPVYADGGLVMQAVLRGQGIA 239

Query: 243 LLPDYIVKDNPNLVRIM 259
           L+ D   ++     R++
Sbjct: 240 LMDDIFAEEEIRAGRLL 256


>gi|88858752|ref|ZP_01133393.1| transcriptional regulator [Pseudoalteromonas tunicata D2]
 gi|88818978|gb|EAR28792.1| transcriptional regulator [Pseudoalteromonas tunicata D2]
          Length = 298

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 126/277 (45%), Gaps = 22/277 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +  VV   GS T A+ QL +  S++SR+I  LE ++  +L  +  R +  T+ G  
Sbjct: 10  DDLYLLCVVIDLGSITAASTQLAVPTSTVSRRICELEAKLNARLLTKQGRNVIATDFGLT 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++    +++ L    +  +       G++++       + +++  L  FL  YP ++++
Sbjct: 70  LYQDFQGLFNHLSDDLLTKKALHDDVQGRVKLVVPALFYRRIIREPLLHFLTRYPKVELE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L  + I  ++D  D  I   + I   +LI R L+      +A+P ++    +   I++
Sbjct: 130 LVLSEERIQPTLD-TDLIITFNQNI-DPNLIARPLIAAQYATFASPSFINENPDINDIKQ 187

Query: 186 LDK-------HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L K        + I F     K  E  N   TV             VNS  +++ +   G
Sbjct: 188 LAKCKWIATSRDKIEFYQQHKKVAELTNLNLTV-------------VNSIEAVIDFVSSG 234

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPE 275
            G+A LP ++ K+NP LVRIM     P  + Y  Y E
Sbjct: 235 LGVASLPLHLTKNNPQLVRIMPHYHQPEKSGYLVYKE 271


>gi|167915067|ref|ZP_02502158.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
          Length = 329

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 132/287 (45%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+ G   +
Sbjct: 1   MQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQDGEAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   LE  +   + ++  P G LR+     L +  +   L +FL  YP I++ + 
Sbjct: 61  RRCVRLIADLEEAEGAFRAAA--PRGLLRVNLQGTLARYFVVPALPDFLARYPGIRLHIG 118

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP  +  L 
Sbjct: 119 EDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELAALA 177

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +  +     +      TVD  + E R+ + + V          V G GI  +P 
Sbjct: 178 AHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQVPR 235

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y + D   +  L  ++     P   V   YP + + + +++AF  ++
Sbjct: 236 YRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWL 282


>gi|322834202|ref|YP_004214229.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169403|gb|ADW75102.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 297

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 129/278 (46%), Gaps = 21/278 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR F  VA   SF  AA+ L +++SS+S  + GLE  +G +L +R  R ++LTE G +L
Sbjct: 8   ELRAFMAVAEHRSFRRAADLLGITRSSLSHIMRGLEDRLGARLLHRTTRSVSLTETGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  + + + L+    ++     + +G+LRI  +    + LL+  + +F+  YP + + L
Sbjct: 68  LKRINPLMNGLDAALEDVAGEPGRLTGELRINGSEGAIRLLLRNIVPQFMARYPGVALDL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + + K +DI  +  D  IRL + +    +  R    +     A+P YL     P +  +L
Sbjct: 128 VAEGKLVDIVGEGFDAGIRLGEAVPRDMIAVRLSPDMRFLTVASPDYLAAHPAPETPDDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +H  +     +P   + + W          VD P        L +++   +++    G 
Sbjct: 188 ARHQCLR--QRLPSG-KRYRWEFHKRGQEVAVDVP------GNLTLDNTQLMIEAAQDGL 238

Query: 240 GIALLP-DY--IVKDNPNLVRIMEDVIT--PSFTVYFC 272
           GIA +P DY  +      L+ ++ED     P   +YF 
Sbjct: 239 GIAYVPEDYAQVALKEGRLIAVLEDWCPPIPGLFLYFA 276


>gi|330971484|gb|EGH71550.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 308

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 134/302 (44%), Gaps = 16/302 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A   SF  AA  L    + IS++++ +E  +G++L  R  R + LT+ G++
Sbjct: 10  DEISALLAIASERSFVAAARLLQRHPTVISKRLAAIEARLGVRLIERTTRQVRLTDAGAR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L          +   + E    + +  G LR+A    +G+  L   L EFL  +P + ++
Sbjct: 70  LVDRLRAATGLITEAEQEATLGAAEIRGVLRLAMPAAMGRLWLSPLLPEFLFAHPQLSVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    + +DI  +  D AIR+ + +  S L+ +KL        A+P YL+    P    +
Sbjct: 130 VDYSERFVDIIAEGIDAAIRIGE-LNDSRLVAKKLGDHRRILCASPAYLQRWGMPHRPGD 188

Query: 186 LDKHNLITFGDL--IPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  HN + F  L   P+  + D   L T+   IG+    CL  N   +++     G GI 
Sbjct: 189 LRDHNCLGFTGLASFPEWRLSDGERLETI--VIGQ---GCLSSNDSEALLVAAKAGVGIL 243

Query: 243 LLPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKAR 295
              ++++  +     L++++ D  + P   +Y   P A        AF+ +I   F +  
Sbjct: 244 GAGEWLMSRDIGAGRLIQLLPDWTLDPQGGIYLIRPSAKFTPAATLAFKTWIESKFAQGT 303

Query: 296 DW 297
            W
Sbjct: 304 PW 305


>gi|288550338|ref|ZP_05970043.2| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315519|gb|EFC54457.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 331

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 144/297 (48%), Gaps = 31/297 (10%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  SGSFT AA+ L L+++ +S  I  LE E+G+ L  R  R L LTE G   ++ 
Sbjct: 45  MFVAVVESGSFTAAADALGLTKAVVSFNIRQLEDELGVTLLLRSTRRLRLTEAGELFYQR 104

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +    E+   +++ +    +G+LRI +T + G  ++   L EF LL+P+++++L+  
Sbjct: 105 SLALLKNAESLADDVRANHAGLTGELRITSTPEYGAKVVVPLLAEFSLLHPELRVRLVSS 164

Query: 130 NKDIDISMDYADCAIRLRKPIQS---SSLIQR-KLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   D+  +  D AIRL     S   ++LI    ++ +   A+   H + +  E L+  E
Sbjct: 165 SLHRDLISERFDVAIRLGTLADSRYHAALISHFAILPVASPAWLHAHPV-DSPEALAQAE 223

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---------PRISCLQVNSYLSIMQYCV 236
              H          +      W   + +  GE         PR   L  +S  ++M + +
Sbjct: 224 WIIHE---------RLASPLRW--QLRKADGESVVLEIKKAPR---LYADSAQALMAFAL 269

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GSG+ALLP ++V+   D   LV ++ +       +Y  YP+A   + K++ F +F+
Sbjct: 270 AGSGVALLPAWLVQNALDTGQLVPVLPEYTFAQQGIYAVYPDAQHVSAKVRTFIDFM 326


>gi|206560850|ref|YP_002231615.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198036892|emb|CAR52795.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 220

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 7/206 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W  +R+F  +AR+G+   AA  L LS  +I R++  LE  +G  LF R A G  LTE+
Sbjct: 1   MEWSDVRIFLAIARTGTLGGAARALALSHPTIGRRLRALEASLGQVLFQRTADGFVLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +  +  ++     T +  L     K  G L+I+++   G  +L   + E+   YP +
Sbjct: 61  GVAILPLAEQMEESALTMERRLTGEQQKLEGTLKISSSDWFGAYVLPPVIAEYSRDYPLV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I ++   +  +++   AD A R+  P     ++QR+L  +    Y A  +     +P+ 
Sbjct: 121 EIDVLTGTRLFNLAQREADVAFRI-VPFTGQDIVQRRLTRMRYGVYVAAAHA----DPVE 175

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL 208
             +   H LI   D       D +WL
Sbjct: 176 -GDGAGHRLIAM-DTSTGSFPDIDWL 199


>gi|95026180|gb|ABF50908.1| AmpR [Ochrobactrum anthropi]
          Length = 291

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 129/292 (44%), Gaps = 22/292 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L ++Q+++S Q+  LET + + LF R  RGL LT +G  
Sbjct: 9   NSLRAFEASARHLSFTKAAIELCVTQAAVSHQVKSLETRLNVTLFERLPRGLMLTSEGET 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     + + ++  T    +    +    LR+     L    L   L++F   YP I ++
Sbjct: 69  LLPTLKDAFDRIAGTLERFEAGHYRE--ILRVGAVGTLAVGWLLPRLRDFQNRYPFIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           L  +N  +DI+ +  D AIR        I ++ L++  L  + +     P      R P 
Sbjct: 127 LSTNNNRVDIAAEGLDYAIRFGSGAWHGIDATRLLEAPLSPLCI-----PELACELRTP- 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H L+       +  E   W          P    +  +S L++M+  + G+GI
Sbjct: 181 --ADLARHTLLRSY----RADEWTQWFVAAGVTGDMPLPRSIMFDSSLAMMEAAMQGAGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL P  +      +  +V+  E  +T   + +    ++   T  + AFR+++
Sbjct: 235 ALAPPLMFSRQLLSETIVQPFETTVTMG-SYWLTRLQSRTETQAMAAFRDWL 285


>gi|86358951|ref|YP_470843.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86283053|gb|ABC92116.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 302

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 133/295 (45%), Gaps = 19/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +RVF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FDAMRVFCRVLERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E  +     +  +P G LR+     L ++ +  +L  FL  YP+I+ 
Sbjct: 64  AYYQRCLSILADIENAEAAF--AGARPKGLLRVDVHGTLARHFVLPSLPSFLEAYPEIEF 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R+  P+ S  +I R++  +     A+P Y+     P    
Sbjct: 122 YMSEGDRLVDLVHEGIDCVLRVGTPVDSDMII-RRVAMLDEITLASPAYVAARGLPQHPD 180

Query: 185 ELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            L  H ++ F      G L  + M D        R I  P  + + VN+  S +    +G
Sbjct: 181 RLAGHRMVGFRSSSTGGPLPLEFMVDGTL-----RNITIP--ATVTVNAAESYVAAARMG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  +P Y  +    +  L++++ D       V   YP   + + +++ F +++
Sbjct: 234 LGLIQIPRYHAEKDLSDGTLIQVLPDFPLTQTPVSLLYPRNRQLSPRVRVFVDWL 288


>gi|330004976|ref|ZP_08305075.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328536461|gb|EGF62808.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 342

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 127/291 (43%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R +  +  +GS + AA Q+  +Q+++SR++  LE  +G+KL  R    + LT+ G + +
Sbjct: 44  MRTYIRIVEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKLILRTTHAMKLTDDGERCY 103

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +V       + +L+ +  +P G LR+      GQ  L   L  FL  +P + ++ +
Sbjct: 104 RHARQVVDAWLALEDDLRIADDRPVGVLRVRAPHAFGQQQLLAPLVAFLQRHPQLSVEWM 163

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D   D  DCAIR+   +  ++ +   L  +     A+P  L       S++ L 
Sbjct: 164 LNDNTVDFLSDNIDCAIRVGAEVDPAT-VSVLLAEVPRCVVASPELLAKYPPLTSLEALS 222

Query: 188 KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               I        ++  +       ++T   P       CL  +S        + G G+A
Sbjct: 223 GLPWIAINTFYQHEVRLRHQASGQIVSTAITP-------CLSTDSLYVARNTALAGLGVA 275

Query: 243 LLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  + V ++    R++E        S  V+  YP A     +L+ F + +
Sbjct: 276 MVSSWTVVEDIAAGRLIELFPQWRPASLPVHLVYPWARYYPTRLRKFLDLM 326


>gi|167589081|ref|ZP_02381469.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 304

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 17/297 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  VF  VA +GSFT AA  L+ +++++S  I  LE E+G+ L  R  R + LT+ G +
Sbjct: 5   DRFAVFRAVAEAGSFTAAAAALNQARAAVSFNIKQLEAELGVTLLTRTTRRVELTDAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V  + ++   + +       G LR+A+T++    ++   L  F   +P +Q++
Sbjct: 65  FYTRCLRVLDEADSAIDDARGEHGGMHGSLRVASTVEYASMVVAPALHAFTQQHPALQVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK--LVTIHMHAYAAPHYLKNCRE---- 179
           L      +D+  D  D AIRL +  Q + L  R   L +  +   A+P  L         
Sbjct: 125 LETHTSQVDLVRDRFDVAIRLGRAEQFADLPYRGVCLSSYDVRPVASPALLATVGAARID 184

Query: 180 -PLSIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            P ++  L +  H+ +      P    D +    V RP  +PR   L V++   + +   
Sbjct: 185 TPDALARLPQLGHSQLERVAAWPLVSRDGS--EHVFRPSAKPR---LVVDNASVLRELAR 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GSG+ALLP+++V+D+     LV  +     P  +VY  Y        K++A+ +F+
Sbjct: 240 QGSGVALLPEWLVRDDLARGVLVDALPGYRFPRQSVYALYVSTRHVPQKVRAWVDFM 296


>gi|158425802|ref|YP_001527094.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158332691|dbj|BAF90176.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 357

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 127/314 (40%), Gaps = 41/314 (13%)

Query: 1   MSFDWDKLR-----------VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKL 49
           MSF  D++R            F   AR  SF+ AA +LHL+Q ++SRQI  LE ++G+ L
Sbjct: 48  MSFRNDRVRHRFLPSISTLTAFEAAARHQSFSRAAAELHLTQGAVSRQIRHLEEQIGLDL 107

Query: 50  FYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS--VKPSGKLRIATTIDLGQNL 107
           F R  + + LT+ G +L+   +E+   L+      Q +      +G +++A         
Sbjct: 108 FERVRQRVVLTD-GGRLY--LAEIRPLLQALSDATQRAMTYAGGAGSIQLAVLPTFATRW 164

Query: 108 LQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTI 163
           L   L +FL  +PDI I  I      D + +  D AI    P+   +    L+  ++V +
Sbjct: 165 LMPRLPDFLARFPDITINFISRIAPFDFAAEPLDAAIHYGDPVWPGAICEHLMDEEVVPV 224

Query: 164 HMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPR 219
              A+   H L        +  L +       D          WLA        P   PR
Sbjct: 225 CSPAFRDRHALDRPERLAGVVLLQQTTRPHLWD---------EWLALAGASHPSPFRGPR 275

Query: 220 ISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEA 276
                   +  I +    G G+ L+P + V++     R++     P  +    Y  YPEA
Sbjct: 276 F-----EQFTMIAEAAAAGLGVGLVPRFFVEEEVAQGRLVLPFDRPMCSDKAYYVVYPEA 330

Query: 277 LKNTGKLKAFRNFI 290
               G + AF  +I
Sbjct: 331 KAGGGAVTAFARWI 344


>gi|53715975|ref|YP_106447.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|52421945|gb|AAU45515.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
          Length = 312

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 24/300 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 8   NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 67

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 68  NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 123

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 124 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAV 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVL 237
           P    +L   + I  G L       F       R  P G      L+V S L   Q  + 
Sbjct: 183 PRHPDDLPGSHWIGHGGLANLSYSVFGNEGRSVRIQPPGR-----LKVKSVLLAHQMALA 237

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 238 GAGISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 292


>gi|307261163|ref|ZP_07542839.1| hypothetical protein appser12_7240 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869145|gb|EFN00946.1| hypothetical protein appser12_7240 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 298

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 133/288 (46%), Gaps = 10/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE G  
Sbjct: 5   NAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTEAGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+IQ+ 
Sbjct: 65  YYQRCLPILNELKDAEDSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPNIQLN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P ++ +
Sbjct: 125 IEFSDRRVDVVAEGYDLVLRI-GALEDSSIVAKRIARSELVLLASPEYLAKHGTPENLAQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + + +       D +    +     +P    +  N Y +++Q    G GI  LP
Sbjct: 184 LTEHTCLIYENHQQWQFTDGDQKVKI-----KPNAHVISNNGY-ALLQMTKAGQGIVNLP 237

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ K+      LV I+      S  +   YP     + K+K    F+
Sbjct: 238 LFLAKEEISAGKLVEILPQYKQHSIDISILYPHRRYLSPKVKVLIEFL 285


>gi|262374684|ref|ZP_06067956.1| transcriptional regulator [Acinetobacter junii SH205]
 gi|262310340|gb|EEY91432.1| transcriptional regulator [Acinetobacter junii SH205]
          Length = 297

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 18/273 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A+ G+ + AAE L  S++ +SR +  LE     +LF R+ R ++LT  G K  
Sbjct: 7   IQVFVCIAQQGNLSKAAEHLDYSKAMVSRYLEHLEQTFSTRLFQRNTRKVSLTPAGEK-- 64

Query: 68  RVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              + VY +    Q +L E    P   SG +R    + L Q  +   +K+F  LYP I  
Sbjct: 65  ---ALVYCENILQQQQLLEGLAAPEQHSGTIRFTCGLFLFQLGVNECIKQFKKLYPHIHF 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
            + L    +D+     D A+R+ + + +  LI R +  I     A PHYL++   PLS  
Sbjct: 122 DVYLTENTVDLMDAQFDLALRITQKV-ADGLIARPVCDIESIFCAHPHYLQD-HTPLSHP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I          + +    T  +P   P     + N  +++ Q C+   GIA+
Sbjct: 180 SQLIQHECIAHH----THNQYWTLFDTDQQPQNYPLNVTFKSNDVIALYQMCLKAEGIAM 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           LP  +V+ +     L ++  D   P  T+   Y
Sbjct: 236 LPTLLVRQDIAQHRLQQVFTDFSAPDLTLSLVY 268


>gi|163736444|ref|ZP_02143863.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161390314|gb|EDQ14664.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 303

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 136/296 (45%), Gaps = 21/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    + R GS + AA++L L+Q ++SRQ+  LE ++G+ L  R  + LTL+ +     
Sbjct: 14  LRALEALDRLGSASAAADELALTQGAVSRQLQALERQLGVDLVRRDQKRLTLSPEAQTYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +  +++  + + +Q + +  +G L +A     G   L   L EF  L+PD+ I + 
Sbjct: 74  ADIRQALNQIAQSTLRVQAAPL--AGSLNLAILPAFGMRWLMPRLPEFARLHPDVTINMS 131

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYL--KNCREPLS 182
              +  +   +  D AI       P   + L++ +     M    AP  L  +    P+ 
Sbjct: 132 TRLEPFNFVSEGFDAAIHFGTADWPGTQALLLKHE----QMLPVCAPDLLEGRQISTPVD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I  L   ++ T     P+  +  +W  + D  + +  +S    + + +I Q  + G G+A
Sbjct: 188 IAALPLLHIQTR----PQAWQ--HWFESHDIALQD-GLSGTMYDQFATITQAALHGLGVA 240

Query: 243 LLPDYIVKDNPNLVRI--MEDVITPSFTVYF-CYPEALKNTGKLKAFRNFIFLKAR 295
           L+PDY+V+ +    R+  +    T S   YF  +PEA      L  FRN++  +A+
Sbjct: 241 LMPDYLVEQDLATGRLIALHPTATESPGAYFLVWPEARAKDPALIKFRNWLAGQAQ 296


>gi|226944562|ref|YP_002799635.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
 gi|226719489|gb|ACO78660.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
          Length = 319

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 2/190 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   A  GSF+  A ++ L    +S  I  LE ++ I+LF R  R L LT +G +
Sbjct: 5   EDLALFVRSAALGSFSAVAREVDLLPGQVSAAIKRLERDLDIRLFARSTRSLRLTAEGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V   L      L        G L+++   DLG+NLL   L  F   +P + ++
Sbjct: 65  YLPYAERVLETLREGHERLHRERAGLQGLLQVSAPSDLGRNLLLPWLSAFCREHPRLTLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSIQ 184
           L+L ++  DI  D  D AIR   P++ +S I   L   +     AAP YL+ C  P ++ 
Sbjct: 125 LLLSDQVADIFRDPIDVAIRY-GPMEDASFIALPLAPDNRRVLVAAPDYLQRCGRPRTLD 183

Query: 185 ELDKHNLITF 194
           EL  H  + +
Sbjct: 184 ELAGHVCLVY 193


>gi|318607238|emb|CBY28736.1| putative transcription regulator protein [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 308

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 130/302 (43%), Gaps = 31/302 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  +   GSF+ A E+L L ++++S  +  LE  +G++L  R  R + +T +G+  +
Sbjct: 7   MQIFVRIVELGSFSRATEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITAEGTLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E          ++P GK+RI     L +N++   L +F   YP I + L 
Sbjct: 67  HRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALSDFYQRYPHITLILG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  ID+  +  DC +R   P     L  R +       YA+P YL+    P+S+ +L 
Sbjct: 127 ANDSTIDLLREGVDCVLRAWLP-HDEQLAARNIGQQPQITYASPAYLEKYGIPMSLDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRI--SCLQVNSYLSIMQYCVLG 238
            H  + +          F+ L   D P+        E R+  S L V+   + +   + G
Sbjct: 186 GHQAVGY----------FSQLNHRDYPLEFICQGKIENRVLPSILSVSGADAYIAAGMAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+   P   ++       L+ ++  +  P   ++  YP      G+  A R  + +   
Sbjct: 236 LGLIQAPTAGIQGQLAQSELIEVLSHIPPPVMPLFIMYP-----PGRFLAPRVRVLI--- 287

Query: 296 DW 297
           DW
Sbjct: 288 DW 289


>gi|238894118|ref|YP_002918852.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546434|dbj|BAH62785.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 342

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 127/291 (43%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R +  +  +GS + AA Q+  +Q+++SR++  LE  +G+KL  R    + LT+ G + +
Sbjct: 44  MRTYIRIVEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKLILRTTHAMKLTDDGERCY 103

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +V       + +L+ +  +P G LR+      GQ  L   L  FL  +P + ++ +
Sbjct: 104 RHARQVVDAWLALEDDLRIADDRPVGVLRVRAPHAFGQQQLLAPLVAFLQRHPQLSVEWM 163

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D   D  DCAIR+   +  ++ +   L  +     A+P  L       S++ L 
Sbjct: 164 LNDNTVDFLSDNIDCAIRVGAEVDPAT-VSVLLAEVPRCVVASPELLAKYPPLTSLEALS 222

Query: 188 KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               I        ++  +       ++T   P       CL  +S        + G G+A
Sbjct: 223 GLPWIAINTFYQHEVRLRHQASGQIVSTAITP-------CLSTDSLYVARNTALAGLGVA 275

Query: 243 LLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  + V ++    R++E        S  V+  YP A     +L+ F + +
Sbjct: 276 MVSSWTVVEDIAAGRLIELFPQWRPASLPVHLVYPWARYYPTRLRKFLDLM 326


>gi|163853886|ref|YP_001641929.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|163665491|gb|ABY32858.1| LysR substrate-binding [Methylobacterium extorquens PA1]
          Length = 301

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 134/293 (45%), Gaps = 12/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA SG F  AA  L +S ++++R ++ LE  +G +LF R  R + LTE G +  
Sbjct: 7   MRVFVRVAESGGFAGAARALSMSPAAVTRAVAALEAIIGARLFIRTTRSVKLTEAGGRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +     S+  P+G L +   +  G+  +   + ++L  +P + ++ +
Sbjct: 67  EDCRRILAEIAEAEATAAGSTATPTGVLTLTAPVQFGRLYVLPVVTDYLARHPAVAVRAL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D  +R+   +  S L   ++ ++     AAP YL+    P + ++L 
Sbjct: 127 FLDRIVNLIEEGIDVGVRIGH-LADSGLTATRVGSVRRVVCAAPSYLERHGVPETPRDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H +I  G   P  + ++ +       +G   R+ C   N+  + +   + G GIA L  
Sbjct: 186 DHAVI--GASNPGTLPEWRFGPEGRTTVGVHARLVC---NTVDAALAAALDGWGIARLLS 240

Query: 247 YIVKD--NPNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           Y V        +RI+  ED   P   ++   PE  +   K +AF +    + R
Sbjct: 241 YQVAPAVAEGRLRILLSEDEEAP-VPIHVVSPEGRRAPAKTRAFVDLAAARLR 292


>gi|329889413|ref|ZP_08267756.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328844714|gb|EGF94278.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 302

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 10/277 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V     F  AA  L + +S +SR+I+ LE ++G +L  R +R  ++T+ G
Sbjct: 3   DLNDLYYFVQVVDHHGFAPAARALGMQKSKLSRRIAALEDQLGTRLIQRSSRKFSVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +  + E  Q  +  +  +P G +R+A    L    +   +  F+ LYPD+ 
Sbjct: 63  LAYYQHCLAMLIEAEAAQALIDGARSEPCGTIRVACAPGLLTYQMSSLIVRFMALYPDLD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   ++ +D+  +  D AIR+R+ P++ + L+ RKL        A+P  +     P  
Sbjct: 123 VQLHSTSRRVDVIGEGFDLAIRVREPPLEQTDLVMRKLDESVHRLVASPDLIARMGRPTG 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIM-QYCVLGSG 240
             +L     + FG        D  W L   +      R +   V   L ++ +  V G G
Sbjct: 183 PADLANWPSLDFG----PAHRDHVWALHHTEGMTASVRHAPRLVTDDLHMLHEGAVHGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
           +ALLP   V    D   LV ++ D     + V+  +P
Sbjct: 239 VALLPTVAVARDLDAGKLVDLLPDWRPKKWIVHAVFP 275


>gi|262192854|ref|YP_001079366.2| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|261835013|gb|ABO03324.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
          Length = 320

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 24/300 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 16  NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 75

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 76  NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 131

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 132 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAV 190

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVL 237
           P    +L   + I  G L       F       R  P G      L+V S L   Q  + 
Sbjct: 191 PRHPDDLPGSHWIGHGGLANLSYSVFGNEGRSVRIQPPGR-----LKVKSVLLAHQMALA 245

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 246 GAGISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 300


>gi|222110541|ref|YP_002552805.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221729985|gb|ACM32805.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 305

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 125/308 (40%), Gaps = 54/308 (17%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  S + AAE+LHL+QS++SRQ+  LE ++G  LF R  + + LT+ G    
Sbjct: 13  LLAFEAAARHASISRAAEELHLTQSAVSRQVRQLEAQLGQALFTRVRQRVVLTDAGRLYA 72

Query: 68  RVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                V  +L   TQ  +  +     G L +A    LG   L   L  F  L+P++ + L
Sbjct: 73  ADVRAVLQQLGAATQKAM--ALADGGGLLHLAVLPTLGARWLVPRLPAFAALHPELTVNL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +  D + +  D AI                       Y APH+     + L  +E+
Sbjct: 131 SARGEPFDFAQEPFDAAIH----------------------YGAPHWAGAVCDYLMHEEV 168

Query: 187 ---------DKHNLITFGDLIPKCMEDFNWLATVDRPI---------GEPRISCL---QV 225
                     +H + T     P  +     L    RP+         G P    L   + 
Sbjct: 169 VPVCSPALRTRHRIET-----PADVAGLTLLHQTTRPVLWADWFEQEGVPAPQALRGPRF 223

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
             +  I Q  + G G+ALLP +++++   +  LV +   V+T S   Y   P A   +  
Sbjct: 224 EQFAMIAQAAISGLGVALLPRFLMEEELASGALVELPGGVLTSSDAYYLVVPLARAESAG 283

Query: 283 LKAFRNFI 290
           +KAFR ++
Sbjct: 284 VKAFRAWL 291


>gi|254228786|ref|ZP_04922209.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262396496|ref|YP_003288349.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151938733|gb|EDN57568.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262340090|gb|ACY53884.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 309

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 139/297 (46%), Gaps = 26/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   +EL  E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 73  DQSIAMANAAQQA-VELSAEEHAEPTGALTVAAPEAFLNSVLQPFVLPFLERYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + +ID+     D A +L  KP    +L+ +++   ++   A+P YL     P    E
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDKP--DENLVLKEISKTNLVLCASPDYLAKHGMPEHPTE 189

Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L++H+ I   +     +      E F+ +A   R           VN     +     G 
Sbjct: 190 LEQHDCIYLAENDKDNIWSFFKEEAFHSIAVSGR---------YAVNHSQMRLNGVKSGL 240

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  D+++KD      +V ++ D +  S     +   Y +      +L+ F +F+
Sbjct: 241 GIGIFHDFVIKDALEQGEVVEVLPDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFV 297


>gi|325267732|ref|ZP_08134383.1| LysR family transcriptional regulator protein [Kingella
           denitrificans ATCC 33394]
 gi|324980856|gb|EGC16517.1| LysR family transcriptional regulator protein [Kingella
           denitrificans ATCC 33394]
          Length = 288

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 28/297 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +DW+ +R F  +    + T AAE L +  S++SRQI+ LE  +G++LF R  +   LT
Sbjct: 1   MDWDWNGIRHFTTLVEKQTLTAAAEHLGVQHSTVSRQIAQLENALGLRLFDRIGKRYLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID----LGQNLLQGNLKEFL 116
            +G +L+R   E+   +   Q      + +   +LR +  I     + + LL  ++ +F 
Sbjct: 61  PEGERLYRHACEICKDMSMLQ-----RTAREQAELRHSVVISAPPFVARLLLMPHIADFY 115

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             + DI++ +  D    D+    AD A+RL +P Q + L  R++       Y    YLK 
Sbjct: 116 RKHNDIRLIIQSDAALADLHGRQADIALRLVRPTQ-NDLAVRRITHYSYRIYGHEGYLKT 174

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            R     +E  +   I       +      W A     IGE        N + ++ Q   
Sbjct: 175 IR-----RENWRFVQIAVNTRFSR------WFAE---QIGEDADISFASNDFAAVKQAVC 220

Query: 237 LGSGIALLPDYIV--KDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNF 289
              GI +LPD+ V   D  + V +  D   P F   ++    E ++ +  ++A  ++
Sbjct: 221 EQIGIGILPDFAVFPADRLHPVSLNPDAPLPEFAAELFLVMHEDVRRSPSVRAVADY 277


>gi|322832777|ref|YP_004212804.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167978|gb|ADW73677.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 311

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 127/286 (44%), Gaps = 11/286 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++ F  +  SGS + AA QL  SQ ++SR++  LE  +G KL  R    + LT+ G +
Sbjct: 13  DLMQTFVRIVESGSLSAAAAQLSTSQPTVSRRLQSLERLLGAKLILRTTHAMKLTDDGQR 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  +  + + +L  +  +P G LR+      GQ+ L   L  +L  YP++ + 
Sbjct: 73  CYEQAKLLLERWVSLEDQLSGAGDEPVGTLRVRAPHAFGQDQLIAPLTRYLQRYPNLSVD 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQ 184
            +L+++  D   +  DCAI++   +   S++   L  +     A P  L+  + P++ + 
Sbjct: 133 WMLNDRTPDFISEDIDCAIQVGN-VADPSMVAILLAEVPRIVVATPELLR--QHPVTRVS 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243
           EL K   I+F         +F      D  +    I+       L  M+   L G G  +
Sbjct: 190 ELAKLPWISFSTYY---RNEFTLKHDNDGRMESCNIAPRMATDSLYAMRKAALSGLGAGI 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  +IVK++     L R++         VY  YP +     +L+ F
Sbjct: 247 VSAWIVKEDIAEGRLQRVLPGWNALPLPVYLVYPYSSYYPARLRKF 292


>gi|238760371|ref|ZP_04621512.1| Transcriptional regulator, LysR family [Yersinia aldovae ATCC
           35236]
 gi|238701431|gb|EEP94007.1| Transcriptional regulator, LysR family [Yersinia aldovae ATCC
           35236]
          Length = 306

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 6/193 (3%)

Query: 1   MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D  R+   F   A+  +F+ AA QL ++ +++S+ I  LE ++ ++LF R+   +
Sbjct: 1   MSLPFDVHRLLPAFLSAAQCENFSAAARQLGVTPAAVSKNIRVLEEKLALRLFQRNTHSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT +G  L    + ++  L  T   ++    +PSG +R++     G+ LL   + EF+ 
Sbjct: 61  VLTNEGKALLARVAPLWQALSNTLDTVRSDDKQPSGTVRVSVIPGFGRQLLMPLIPEFMA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP I + L L+ + +++  +  D  I  R  P   S LI R+   + M   A+P YL  
Sbjct: 121 RYPLIDVDLSLEARVVNLVGEGFDVGIGTRIDP--DSRLIARQFYPMQMVLAASPAYLAR 178

Query: 177 CREPLSIQELDKH 189
              P + Q+L +H
Sbjct: 179 NGSPSNPQDLYQH 191


>gi|182678458|ref|YP_001832604.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634341|gb|ACB95115.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 301

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 132/294 (44%), Gaps = 28/294 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +    F  V   G F  A   L   +S +SR+I+GLE  +G++L  R +R   +T
Sbjct: 1   MKIDLNDYAYFAEVVAHGGFAAAGRALREPKSKLSRRIAGLEDRLGLRLIERSSRRFRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +     +  + E  +  + ++  +P G++R +    + +  + G +  FL+ YP
Sbjct: 61  DTGQAFYERCRAMLAEAEQAEALVMQAQAEPHGRIRFSCPTGMLEP-ISGLISSFLVRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++QL+  ++ +++  +  D A+R+R  + S + +  + + +      A   + +  + 
Sbjct: 120 KVRLQLVATDRALNLIEERIDLALRVRGSLTSDAALTMRSLGLSTRILVASPLIAS--QV 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-------LATVDRPIGEPRISCLQVNSYLSIMQ 233
            SI++L     +   D      +D  W       L  V R   EPR+ C       ++  
Sbjct: 178 GSIEQLALFPALATND----TADDLEWHLETEDGLKQVIRV--EPRMGC---EDMATVRA 228

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRI------MEDVITPSFTVYFCYPEALK 278
             + G G+A+LPD++  D      LVR+      ++ ++   FT     P A++
Sbjct: 229 AAIDGIGVAILPDHVCLDALEAGRLVRVLPAWRGLQGIVHLVFTTRRGLPPAVR 282


>gi|149916708|ref|ZP_01905210.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149822425|gb|EDM81814.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 304

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 127/280 (45%), Gaps = 16/280 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L++F  V   G    AA  L +++SS+SR ++ L+  +   LF R  R L L 
Sbjct: 1   MDADMKDLQIFVAVVEHGGVAGAAGALRVAKSSVSRAMARLQAALDAALFDRVGRNLELN 60

Query: 61  EQGSKLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G +L+ RV + +    E T+ E     V P G +R++  I +G  LL   +  F+   
Sbjct: 61  ATGRRLYARVEAPLAAIAEATR-EATNQDV-PRGHVRLSAPIGVGSELLPRLVAAFVRRN 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ + + LD+       D  D AI +   ++ SS   R+LV     AYA+P Y      
Sbjct: 119 PEVTVAVKLDSDPAAAMRDGFDMAI-VGGRLEDSSYRCRRLVVSPFRAYASPSYEARRGL 177

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQV-NSYLSIMQYCVL 237
           P + ++L++H +I FG   P     +        RP+   R+S   V NS   + Q    
Sbjct: 178 PRAPEQLEQHEVIIFGG--PHTHATWELTGPEGPRPV---RVSGRVVANSLAFVRQAATA 232

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEAL 277
           G GIALLP     + P  + +   ++ P    +  Y + L
Sbjct: 233 GLGIALLP-----ETPGRLAVDRGLLMPVLPEFALYGDPL 267


>gi|127513598|ref|YP_001094795.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126638893|gb|ABO24536.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 303

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 135/286 (47%), Gaps = 11/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F   AR  S + AA +L ++QS++S+QI  LE     KLFYR    + LTE G +L 
Sbjct: 10  LQIFEACARLESCSLAANELCITQSAVSQQIKQLEDYFLEKLFYRQGGKINLTEAGIELR 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + V++ L +    L ++    +G++R+ +   L    L   +++   +YP++ I + 
Sbjct: 70  ERLAPVFYDLNSVCSSLVQNM---AGEVRVHSYTSLAARWLVPKMEQLRQMYPELNINVG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +   DI++S   AD  I  R+     ++I   LVT  + A+ +P YL    + +S+  LD
Sbjct: 127 MFQNDIEMSDMIADIFIVTRECQDGYTII--PLVTEKLVAFCSPDYLAQ-SQGISLATLD 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H L+ +       ++   W    D  I  P    +  N  +  +Q  + G GI L  + 
Sbjct: 184 QHCLL-YSKHKDYGVDWDTWFRNNDIAIS-PNQKKIFFNHNMLAVQAAIYGQGIVLGLEQ 241

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +K   D+ NLV++         T Y  Y  + K   ++    ++I
Sbjct: 242 TLKVELDSGNLVKLDLPTCLSGLTYYIAYKTSKKRDARIMRIVDWI 287


>gi|217979488|ref|YP_002363635.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
 gi|217504864|gb|ACK52273.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 298

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 136/299 (45%), Gaps = 32/299 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +R F   AR GS   AA +L ++ S++ R+I+ LE  +G ++F +   G  LT  
Sbjct: 2   IDWDDVRYFLAAARGGSVRAAAGRLGVNHSTVLRRIAQLEERLGAQMFEKLPSGYRLTAA 61

Query: 63  GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G ++  + +++    H+LE T++  ++ SV+  G LR+     L  +LL  +  +F  L+
Sbjct: 62  GEEVLELANQMEASSHQLE-TRVFGRDQSVR--GLLRVTLAPPLATHLLMPDFADFTRLH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI+++++   +  +++   AD A+R+        +  RK + +++H    P        
Sbjct: 119 PDIEMEILSSGELANLTNREADVALRV--------VYDRKTLPLNLHGLKGPELFGGV-- 168

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI------GEPRISCLQVNSYLSIMQ 233
                 + +  L  + +  P   +   W+      I      GE R + +   +  +  Q
Sbjct: 169 -----YISRDRLAAWREGAP---DPIRWIVISMHGIPDWASEGEVRATGVPFRTTDAEAQ 220

Query: 234 YCVLGSGIAL--LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  GI +  LP +I   +P LVR     +    TV+       + T +++ F  F+
Sbjct: 221 IVAVRQGIGMTTLPCFIGDADPLLVRTPGADLHMYGTVWLLTQGETRKTKRVRIFTEFV 279


>gi|301632020|ref|XP_002945089.1| PREDICTED: uncharacterized HTH-type transcriptional regulator
           yafC-like [Xenopus (Silurana) tropicalis]
          Length = 303

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 96/190 (50%), Gaps = 1/190 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D L +F  +A  GSF+ AA +  L +S++SR+I+ LE  +G +L  R +R L LT
Sbjct: 1   MTTTADDLILFAHIAACGSFSAAARRAGLPKSTLSRRIAALEASLGERLLTRGSRTLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  +      +  ++       Q   + P+G+LR++   +  +  L   L+ F+  Y 
Sbjct: 61  EFGEGVFHHGQRLLDEMAAVNALAQSRQITPAGRLRVSLPPEFHELSLLPILQTFVQRYA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++L +    +D+   + D A+R+   +   +SL+ R L  +    YA+P YL     
Sbjct: 121 QVQLELDISPHRVDLRAGHFDLAVRVAGSLPDDASLVARPLTQLPHGLYASPAYLAVHGM 180

Query: 180 PLSIQELDKH 189
           P +  +L +H
Sbjct: 181 PDTPADLARH 190


>gi|270263487|ref|ZP_06191756.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042371|gb|EFA15466.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 302

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 127/298 (42%), Gaps = 23/298 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V     F  A   L + +S +SR+++ LE  +G +L  R  R  ++T
Sbjct: 1   MFTDLNDLFYFASVVDHQGFAPAGRALGIPKSKLSRRVALLEERLGARLIQRSTRRFSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  + +  Q  ++++  +P G +R++  + L    +   +  F+  YP
Sbjct: 61  EVGQNYYVHCKAMLVEADAAQQAIEQTRAEPCGTVRMSCPVALLHTRVGTMVAAFMADYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + + L   N+ +D+  +  D AIR+R  P++ S L+ + L     +  A+P  ++    
Sbjct: 121 KVTVHLEATNRRVDVVGEGLDLAIRVRPPPLEDSDLVLKILAQRIWYIAASPALVRTLGP 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIM 232
               +ELDK+  +  G           W  T   P GE       PR   L  +  L + 
Sbjct: 181 VQRPEELDKYPTLDLG----PARAQHQWQLT--GPDGEKVEWEHRPR---LVTDDMLMLR 231

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
              + G GI  LP  +++DN     LV ++ D       V+  YP      G L A R
Sbjct: 232 TAAIAGVGIVQLPSMMMRDNMLRGELVPLLPDWQPQGGVVHAVYP---SRRGLLPAVR 286


>gi|221211509|ref|ZP_03584488.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
 gi|221168870|gb|EEE01338.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
          Length = 309

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R+F  VA  GSF  AA  L + ++++S  +  LE  +G +L +R  R + LT  G+ 
Sbjct: 5   DQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLEAALGTRLLHRTTRQVQLTADGTV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + +      +       G+L +     + + ++   L      +P +Q+ 
Sbjct: 65  LLERGRRLLAEADELDRLFRRRDRDVIGRLNVDVPSRIARRVIAPALPALFRRHPKLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+    P     
Sbjct: 125 LGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFALINCASPDYLREHGVPEHPDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H     G   P    + +W    D     +  P  S + VN+  + +  C+ G G+ 
Sbjct: 184 L-AHGHWAIGYASPTTGRELDWEYGTDGGRHTLTLP--SRVVVNNAETYIASCIAGMGLI 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +P + V    ++  LV +M         V   YP     + +L AF
Sbjct: 241 QIPRFDVAHLLESGALVEVMRAHRPAPMDVSAVYPHRRHRSRRLNAF 287


>gi|134280816|ref|ZP_01767526.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|134247838|gb|EBA47922.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 312

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 8   NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 67

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 68  NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 123

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 124 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAV 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L   + I  G L       ++      R +       L+V S L   Q  + G+
Sbjct: 183 PRHPDDLPGSHWIGHGGL---ANLSYSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGA 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 240 GISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 292


>gi|89901215|ref|YP_523686.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89345952|gb|ABD70155.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 324

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 130/290 (44%), Gaps = 14/290 (4%)

Query: 6   DKLRVFYVVARS---GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           ++LR     A++   GS   AA    +S  + S+ ++ LE  +G++L +R  R L LT++
Sbjct: 4   NELRAIATFAKAVELGSLRRAAVAQGVSPQAASQTLAQLEQHLGVRLLHRTTRNLALTDE 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L   T      LE     ++ S    +G LRI         LL   + EF   +PD+
Sbjct: 64  GRQLLEATQPALAALERALQRVRASKDDIAGPLRIVGPQSSFVPLLWPVIDEFCRQHPDV 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q  + LD+   +   D  D   R+  P Q   LI R+L  + +   AAP YL     P +
Sbjct: 124 QPDVQLDDSIGNWVQDRVDVGFRIGAPPQ-DGLIARRLFPVQLIICAAPDYLARHGAPRT 182

Query: 183 IQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCV 236
           ++EL  H    F     G ++P  ++    +   D P+      + L++ + LS  Q   
Sbjct: 183 LEELASHRCSVFRHPGTGQVLPWYLQVDGEVVHRDMPLALSTNDTELELQAVLS-GQVIA 241

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             SG++  P  ++++   LV I+   +T   +VY  Y        +++AF
Sbjct: 242 QLSGMSAAP--LIREG-RLVPILTQHMTDHMSVYVYYGSRTSQPARVRAF 288


>gi|85706936|ref|ZP_01038026.1| putative transcriptional regulator, lysR family protein
           [Roseovarius sp. 217]
 gi|85668547|gb|EAQ23418.1| putative transcriptional regulator, lysR family protein
           [Roseovarius sp. 217]
          Length = 286

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 124/281 (44%), Gaps = 15/281 (5%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS T     L L+ +  S+++  LE  +G++LF R  R +  TE G+  +     V   L
Sbjct: 4   GSITSGGRDLRLTPAVASKRLKELEKRLGVRLFNRTTRSMMPTEVGTVFYEEARAVLLAL 63

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           +  +  +   S  P G +RI   + +G+ ++   + EF   YP+ +I++ L ++ +DI  
Sbjct: 64  DHAEARVASFSEVPRGAIRITAPLGVGRRIVAPLVPEFTDRYPETEIRMRLSDRKVDILA 123

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL-DKHNLITFGD 196
           D  D A  +  P +S+  + RK         AAP YL     P +  +L   HN +    
Sbjct: 124 DGQDVAFFVGDPGESTMKL-RKFADCDRVLCAAPSYLTRAGIPRTPDDLMHGHNCLLL-- 180

Query: 197 LIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPDYIVK--- 250
             P+  E F W    D  +G  R+        +    +  + + G GI   P + ++   
Sbjct: 181 RYPRSPEYF-WTLRTD--MGARRLDVQGKYDADDGDVLTDWALAGRGIVNKPRFDIREHL 237

Query: 251 DNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFI 290
           ++  LV ++ D   P  T++ C YP       K++ F  +I
Sbjct: 238 ESGRLVEVLPDT-PPMPTIFGCLYPHKKLQDPKVRLFVEYI 277


>gi|83943386|ref|ZP_00955845.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
 gi|83845618|gb|EAP83496.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
          Length = 301

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 133/284 (46%), Gaps = 7/284 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++R F +VA++ SFT AA+++  S   +S+ ++ LE  +G++L  R  R ++LT+ G+ 
Sbjct: 5   DRMRAFALVAKNASFTIAAQRMGRSARLVSKYVADLENALGVQLLNRTTRSVSLTDAGAT 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              +   +    +  +  ++       G + I+     G   L  +L +F   +P++ + 
Sbjct: 65  YLALCEPLLDGFDELEERVRHDQTSLRGAIHISAPTGFGALRLTPSLAKFGAKHPNVDLN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ + I  +  D AIR+  P++ SSL  R+L  + +   A+P YL+    P   + 
Sbjct: 125 LQFSDRRVSIIEEGFDLAIRI-GPMRDSSLKVRQLGPMPLVVCASPAYLERTGTPDHPRA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I  G++    +  F+     +     P     ++N+  +  +    G+ IA  P
Sbjct: 184 LATHECILDGNMTEPTIWRFDINGQEE---AVPVRGRFRMNAPAAAARLAATGAAIARCP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            Y V D   + +LV +  +     + V   +P+  + T +++A 
Sbjct: 241 AYTVADAFRSGDLVELFAEHRVSPYAVAALFPQNRRLTTRVRAL 284


>gi|294010570|ref|YP_003544030.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292673900|dbj|BAI95418.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 299

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 113/249 (45%), Gaps = 17/249 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  +    +F+  A +LH S ++I+R++  +E   G  LF+R  R L  T +  +L 
Sbjct: 8   LRTFVRLCEKPNFSRVARELHASHTTIARRLDQVEAHFGAVLFHRTTRRLIATPEADRLL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  + +      +P G +RI  T  LG + ++  L E    YP +Q    
Sbjct: 68  VHARAMLDALEGAERDFGPVRGEPGGLVRIGFTTALGLHYVE-RLGELTARYPALQFDCA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+  D  D A+R+  P+    L+   L  +     A P YL     P S ++L 
Sbjct: 127 MTDWQRDMVEDRLDLALRV-GPVGDDRLVVHPLGRLPRLLVAQPAYLAARGMPASAEDLS 185

Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVLGSGIAL 243
            H  I   +GD +P       W  T+D   G  R++    + +S  ++ +  + G GIAL
Sbjct: 186 AHQCIAYAYGD-VPA-----RW--TID---GRERVAVGAFRSDSSEAVHRAALSGLGIAL 234

Query: 244 LPDYIVKDN 252
           LP   V+D+
Sbjct: 235 LPAVRVRDD 243


>gi|239820599|ref|YP_002947784.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805452|gb|ACS22518.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 292

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 132/291 (45%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F      G  T AA+ L + ++S SRQ+  LE  VG  L +R A    LT +G +  
Sbjct: 4   VRLFVKAVEVGGLTQAADALSVPKASASRQLKRLEALVGHTLLHRGAGRFGLTGEGREFL 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV   +      L +++   +G+LRI+    LG+ LL  +L  F+  +P +++ + 
Sbjct: 64  STAKEVLEAVNQALSRLSDTNEALTGQLRISVPGYLGRELLSSHLSGFMAAHPLLKLTVD 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  + AD AIR+        L+ R++    +   AAP YL+       + +L 
Sbjct: 124 VNSGRVDLFREDADVAIRVGLE-GCEDLVARRIKRQILVLCAAPWYLERHPAIEKVDDLA 182

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +T G   P+       +  +DR          + N    +++      GIAL+P  
Sbjct: 183 GHFFLTCG---PERQAMEMVVPGLDREHIVRAARVFRANDPELLLRLACSAGGIALVPLL 239

Query: 248 IVK---DNPNLVRIMEDVITPSFTVY-----FCYPEALKNTGKLKAFRNFI 290
             K      +LV ++     PSF +        Y  A +NT K++AF +FI
Sbjct: 240 CAKAEIQGGSLVAVL-----PSFELMPEELNLTYLPARRNTRKIRAFVDFI 285


>gi|311694560|gb|ADP97433.1| transcriptional regulator, LysR family protein [marine bacterium
           HP15]
          Length = 295

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 137/293 (46%), Gaps = 24/293 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   +R  SF  AAE L++SQ+++S  I GLE  +G+KLF R  R + LT +G KL 
Sbjct: 10  LQAFRYASRELSFKSAAEALNISQAAVSTHIRGLEEFLGMKLFVRLTREVKLTHEGRKLS 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 + +LE   I L      P G+L +AT        L   +  F   +P+IQ+ L 
Sbjct: 70  GYVETGFQELEKG-IALFAPDSNP-GRLTVATVPSFASRWLVPRIDSFQRAHPEIQLSLQ 127

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++   D  D AIR      P   S L+Q++ +    H+                +
Sbjct: 128 PNLQLVNFQGDGVDLAIRFGNGEYPGLESRLLQKEKLLPVCHSSVTEG-----------K 176

Query: 185 ELDKHNLITFGDLIPKCME-DFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +   NL     LI + ++ + +WL   ++    I +  I+ L+V    ++++  + G G
Sbjct: 177 PVTPENLARLPWLIDESVDLERSWLVFQEKLGIKIPDNAIT-LRVTEGTTLVEAVLAGRG 235

Query: 241 IALLPDYIVKD--NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IAL+   +V D     L++   D+  P+ +  Y   PEA   T K++AF ++I
Sbjct: 236 IALMRYSLVADLLKAGLIQSPIDISVPAEYQYYLVAPEAKFRTDKVRAFVSWI 288


>gi|302540881|ref|ZP_07293223.1| LysR family transcriptional regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458499|gb|EFL21592.1| LysR family transcriptional regulator [Streptomyces himastatinicus
           ATCC 53653]
          Length = 301

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 114/261 (43%), Gaps = 14/261 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D  ++R    VA + SFT AAE+ H+ QS++S Q++ LE E+G +LF R +R + LT 
Sbjct: 6   SMDLQQMRYVLAVAETASFTRAAERCHIVQSALSHQVARLEKELGARLFERTSRRVRLTT 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        +     +  + E+  ++ +  GKL + +   +    L   L+++ L YP 
Sbjct: 66  AGEAFLPAARQALEAADRARAEVAAATGEIRGKLAVGSISTVAAVDLPAALRDYRLRYPQ 125

Query: 122 IQIQLILDNKD------IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           ++I L +D+ +       D  +D A   +  +   +   +  R+L      A  AP +  
Sbjct: 126 VRISLRVDSSERLVEQVRDGRLDAAFLGV--QPGFRPRGVRDRELAQGQHVAVVAPGHPL 183

Query: 176 NCREPLSIQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
              + + +  L +   + F D    +   D  + A      G  R    +V+    + + 
Sbjct: 184 AAEDEVDLPRLAEEVFVDFADGSAARAQSDEAFAAA-----GLRREVAFEVSGVELMARM 238

Query: 235 CVLGSGIALLPDYIVKDNPNL 255
              G GIALLP     D P L
Sbjct: 239 VRHGLGIALLPAAFAADLPGL 259


>gi|121586400|ref|ZP_01676188.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121549378|gb|EAX59407.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
          Length = 312

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 30/257 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP----- 180
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P     
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPVHPTN 189

Query: 181 ------LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
                 L + E DK ++ TF     K  E      +    + + ++    V ++L     
Sbjct: 190 LAEHDCLYLAETDKDHIWTFA----KGRETHTVAVSGRYAVNQSQLRLTGVKNHL----- 240

Query: 235 CVLGSGIALLPDYIVKD 251
                GI +  D++V+D
Sbjct: 241 -----GIGIFHDFVVQD 252


>gi|167566484|ref|ZP_02359400.1| gp58 [Burkholderia oklahomensis EO147]
          Length = 299

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 111/237 (46%), Gaps = 6/237 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L  F   AR G+FT AAE+L ++Q ++S+Q+  LET +G+ LF R A+ L LT  G +  
Sbjct: 14  LVFFDAAARHGNFTRAAEELSVTQGAVSKQVVKLETFLGMTLFVRDAKALHLTRAGQQYA 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV + +    E T + ++E +      + IA         L   + EF   +P++ +++
Sbjct: 74  DRVHAILADCAEATALVMKEQTPH---SITIACASGTATLFLADRIAEFSADHPEVSVRI 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++     +++    D  +   + +    ++  +++   ++AY AP +L   R P   QEL
Sbjct: 131 LVREGVFNLNAAEFDIGVYYIRDVPPPGIVGTRIIEEDVYAYCAPAFLGGHRVP--PQEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
               L+   +   + M   +W       IG      +  NSY  ++Q  + G G+ L
Sbjct: 189 MGATLLVAEEQQRQWMGWRDWFRLTAGEIGFRPARTIAANSYPVLLQLALRGHGVIL 245


>gi|83943713|ref|ZP_00956171.1| probable transcriptional regulator [Sulfitobacter sp. EE-36]
 gi|83845393|gb|EAP83272.1| probable transcriptional regulator [Sulfitobacter sp. EE-36]
          Length = 313

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 126/295 (42%), Gaps = 16/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F    R  +F  AA++L ++Q ++++Q+ GLE  + ++LF R  RGL  TE+G  
Sbjct: 11  NGLRAFAAAGRHLTFRAAADELGVTQGAVAQQVRGLEDHLNLRLFLREPRGLAFTEEGRA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   +  + ++      L+ +   PS  + I+ T       L   L  F   +P I ++
Sbjct: 71  YHIAIARAFDQMADATDALRTA---PS-HVTISVTPTFASKWLIPRLAAFTQAHPGIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    +      D  D A+R   P   +SL    L    + A  APH  +    P+    
Sbjct: 127 ITATERVSSFHADGIDLAVRQGNPPFGASLRADLLFEQQIVAVCAPHLAEALNTPMDAAG 186

Query: 186 LDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           + +  L+    DL P+ ++         R +  P    L+ N     +   + G GIAL 
Sbjct: 187 IAEATLLHDTHDLWPQFIK-----TVFGRDV--PTARGLRFNQTTLSLDAALAGQGIALA 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             ++V+ +     LV+ +E  ++     Y   P     +G     R+++  +ARD
Sbjct: 240 NRFLVQRDLRAKRLVQPIEGALSGGSGFYLLSPRQGSPSGAAH-VRDWLLGRARD 293


>gi|261212934|ref|ZP_05927218.1| transcriptional regulator LysR family [Vibrio sp. RC341]
 gi|260837999|gb|EEX64676.1| transcriptional regulator LysR family [Vibrio sp. RC341]
          Length = 312

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 30/257 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP----- 180
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P     
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPIHPTN 189

Query: 181 ------LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
                 L + E DK ++ TF     K  E      +    + + ++    V ++L     
Sbjct: 190 LAEHDCLYLAETDKDHIWTFA----KGRETHTVAVSGRYAVNQSQLRLTGVKNHL----- 240

Query: 235 CVLGSGIALLPDYIVKD 251
                GI +  D++V+D
Sbjct: 241 -----GIGIFHDFVVQD 252


>gi|149201935|ref|ZP_01878909.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
 gi|149144983|gb|EDM33012.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
          Length = 298

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 123/274 (44%), Gaps = 11/274 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  WD +R+F  VARS S + A   L +  +++ R+I+ LE E+G  LF +   G  L+
Sbjct: 1   MTPHWDDIRIFLAVARSESLSGAGRILRIDPATVGRRIARLEEELGAPLFAKSPTGYVLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L          ++    E+   +   SG++RI         LL           P
Sbjct: 61  EAGQRLMGPALRAETAMQEATEEMAGQAGGLSGQIRIGAPDGCANFLLPQVCAAIGAENP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++IQ++   +  +++   AD  I +  P      +Q K+    +H  A   YL++    
Sbjct: 121 DLEIQIVALPRVFNLTRREADMVIAVSPPTAGRLTVQ-KITDYRLHLAATVRYLRSHPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            ++ +L  H ++ +   IP  +  ++ ++L+      G  R+S L  NS    + +   G
Sbjct: 180 ATLADLRAHRMVGY---IPDMIFDKELDYLSEA----GIERVS-LASNSVSVQLNWVRQG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC 272
            GI +L D+ +     L +++ D  + + + Y  
Sbjct: 232 GGIGVLHDFSLPWARGLQKVLPDQFSLTRSFYLV 265


>gi|78063891|ref|YP_373799.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971776|gb|ABB13155.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 297

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 129/286 (45%), Gaps = 10/286 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD  RVF  + R  +   AA+ L + Q+++ R+++ LE  +G  LF R ++G   T 
Sbjct: 7   AMNWDDARVFLAIHRERTLRRAAQTLGVDQATVGRRLAQLEHMLGATLFLRSSKGYLTTP 66

Query: 62  QGSKLHRVTSEV-YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            G    R    +  H  E  ++  Q    + +G+++I TT  L    +  ++      +P
Sbjct: 67  VGELALRAAEAMEQHAHELVRLT-QGVDRRLAGEVKITTTDALALEFVMPSIARLHAKHP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L    + ++++   AD A+R  +P  +  L+ R+L    M  +A+  YL+   EP
Sbjct: 126 DVCVSLNTATQVLNLAKREADIAVRTVRP-DNPDLVARRLACWDMGLFASHDYLQRHGEP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
                   H+L+ +   +    +     A    PI   RI   ++NS L +      G G
Sbjct: 185 ARGSAFAGHDLVVYQPYVDASRKP----AIAGEPIAAGRIVG-RMNSSLMMRAALRSGLG 239

Query: 241 IALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKA 285
           I  +P ++  +   L RI  E      + V+      L++T +++A
Sbjct: 240 IGEVPVHM-GERDGLARIWPEQTRETPYEVWLVTHRDLRHTARIRA 284


>gi|87121108|ref|ZP_01076999.1| transcriptional regulator [Marinomonas sp. MED121]
 gi|86163600|gb|EAQ64874.1| transcriptional regulator [Marinomonas sp. MED121]
          Length = 303

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 15/292 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  WD L+    VA  GS   AA  L ++ S++ R+I+  E    ++LF++   G  LT 
Sbjct: 3   SIRWDDLQYVLTVANEGSVAAAARSLGVNHSTVLRRINTFEHRHKLQLFHKLPTGYKLTA 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      +   ++  + ++    +K  G +++ TT  L + +L  +L  F  L+P 
Sbjct: 63  EGQALLDSALSIETTVKALERKIFGQEMKLEGVIKLTTTDALLRLVLAKHLASFHRLHPK 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--RE 179
           IQ++L + ++ +++S   AD AIR    +   S+   KL  I    Y  P+Y+++   + 
Sbjct: 123 IQLELNVTSRLLNLSHLDADIAIRPANTL-PESVKATKLCKIAFGIYGEPNYIESLQGKH 181

Query: 180 PL-SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           PL + Q L K          P  ++  N    +  PI E +I  L+ +SY  +M     G
Sbjct: 182 PLRAAQWLGK---------TPNIIQK-NQGRVIFEPISEEQI-VLKADSYEPLMIAAEQG 230

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  +P +I   +  L R+  +V      ++      L+++ ++KAF +F+
Sbjct: 231 IGLTYMPCFIGDSSQKLQRVDMEVEHKGTDLWMMTHSDLEHSARVKAFFDFM 282


>gi|229526553|ref|ZP_04415957.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|262192075|ref|ZP_06050238.1| transcriptional regulator [Vibrio cholerae CT 5369-93]
 gi|229336711|gb|EEO01729.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|262032057|gb|EEY50632.1| transcriptional regulator [Vibrio cholerae CT 5369-93]
          Length = 312

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 30/257 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP----- 180
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P     
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPTHPTD 189

Query: 181 ------LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
                 L + E DK ++ TF     K  E      +    + + ++    V ++L     
Sbjct: 190 LAEHDCLYLAETDKDHIWTFA----KGRETHTVAVSGRYAVNQSQLRLTGVKNHL----- 240

Query: 235 CVLGSGIALLPDYIVKD 251
                GI +  D++V+D
Sbjct: 241 -----GIGIFHDFVVQD 252


>gi|170698447|ref|ZP_02889519.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136618|gb|EDT04874.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 312

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 130/300 (43%), Gaps = 38/300 (12%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+ G  
Sbjct: 10  NRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTDAGRA 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++ H  E+    +   +    G LR++  ID G  ++   +      +P + ++
Sbjct: 70  FYDACRDIVHATESALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAIVALRDAHPGLDVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSS----SLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            I +++ +D+  D  D AIRL +   S+     L Q +   +   A+ A H L   R+P 
Sbjct: 130 QIANDRVVDLVADNLDVAIRLGRLADSNYRAVQLGQYEKWVVASPAFVARHGLP--RDPD 187

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP---------IGEPRISC---LQVNSYL 229
           ++  L                  F  L+T  RP          G   + C   +  N+  
Sbjct: 188 ALAAL-----------------PFVMLSTPSRPHTLELDDTSGGHASVRCTAPVVSNTAT 230

Query: 230 SIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +     + G G   L D+ + ++     LVR++    +    ++  YP     + K++AF
Sbjct: 231 ACRAIALAGGGFGFLTDFSIAEDIAAGRLVRLLPAWRSARAGIHAVYPSTRLPSRKVRAF 290


>gi|170736148|ref|YP_001777408.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818336|gb|ACA92918.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 306

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 92/187 (49%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + V  +L+  ++E Q  + +P G LR+        N L   +  F   +P++++ 
Sbjct: 65  IYERCAAVLDELDALEVEAQTHTREPEGLLRLVAHTTAALNRLVPLIAGFKSAHPNVRLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  I +   + S S + R +  I +   A P YL+    P +  +
Sbjct: 125 VTLTERPVDLVGEGYDIGIVVPYMLTSESTVVRLVERIPVVIVATPAYLQAHARPETPAD 184

Query: 186 LDKHNLI 192
           L  H  +
Sbjct: 185 LANHPFV 191


>gi|307611231|emb|CBX00882.1| hypothetical protein LPW_25851 [Legionella pneumophila 130b]
          Length = 302

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 98/185 (52%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F       SF+ AA++L++S S +S+QI+ LE E+ + L  R    LT+T+ G +L+
Sbjct: 7   LKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLIRSTTRLTVTDSGHRLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + +++ +LE  ++      ++ +G +R+  T+      L     +F+  YP I++ +I
Sbjct: 67  EKSLQLFEQLEAVKVIATPDQLELNGVIRLYLTVTPAIPYLTKLSIQFMRQYPKIEVDII 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   ++     D AI     ++ S L+ ++L +I    +A+P Y+     P ++ EL 
Sbjct: 127 VGSDTKELYSSTFDLAISFDD-VKHSKLVCKRLFSIQRKVFASPGYISQHGLPQTLDELP 185

Query: 188 KHNLI 192
           KHN +
Sbjct: 186 KHNCL 190


>gi|221199131|ref|ZP_03572176.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205388|ref|ZP_03578404.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175179|gb|EEE07610.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181582|gb|EEE13984.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 301

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 133/298 (44%), Gaps = 21/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR GSFT AA++L ++  +ISR +  LET +G  LF R  R + LT+ G  
Sbjct: 9   NSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLETWLGKPLFERLNRRVVLTDAGRT 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGK---LRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                +EV    +  +I L  +     G+   LR+          L   L  F + +P I
Sbjct: 69  ---YLAEVGASFD--RIALATAQQFGQGQQRVLRVNAPATFSLRWLVPKLSSFQVAHPTI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--REP 180
           +++L   N+ ID   D AD  IR   P      +  + ++       AP  L+    R P
Sbjct: 124 EVRLSTSNEPIDKLRDSADLIIR-GGPQTIDGYVADEFLSEVRLPVCAPKLLERTPLRTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +      +  T+  + P+      WLA    P   PR +    + YL+ +Q  + G G
Sbjct: 183 ADLANFTLLHAATYPGMWPE------WLAAAGCPNLAPRHALTLEHFYLT-LQGALDGLG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV--YFCYPEALK-NTGKLKAFRNFIFLKAR 295
           +A+ P  +V D+    R+++    P+     YF Y  A + +   ++AFR+++ L  R
Sbjct: 236 VAMGPIALVADDIADGRLVQPFSGPALPAWRYFTYVSATRIDDEAVRAFRDWLKLAGR 293


>gi|162456856|ref|YP_001619223.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161167438|emb|CAN98743.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 300

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 137/301 (45%), Gaps = 17/301 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D D +RVF  VAR+G F  A+     S SS S  +  LE E+G++L +R  R +  T
Sbjct: 1   MAVDLDDVRVFAAVARAGGFREASRTSRTSASSASEAVRRLEGELGVRLLHRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L         ++      ++ +S KP+G LR+   +   + +L   L  FL  YP
Sbjct: 61  EAGARLLERLGPALAEIAAALDVVKSTSEKPAGTLRLNVPVVAARLVLPRILPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIR----LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           DI++++  D+K +DI     D  IR    L K + +  + QR+     +   A+  YL+ 
Sbjct: 121 DIRVEVTADDKLVDILAAGCDAGIRYEETLEKDMIAVPIGQREQ---RLALAASGAYLER 177

Query: 177 CREPLSIQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
              P   ++L  H  +      G L P   E    +  VD P G P +  L  N+   ++
Sbjct: 178 HGRPTHPRKLLDHACLRGRFPSGALCPWEFERDGEVVKVD-PTG-PLVGSLG-NATDLLV 234

Query: 233 QYCVLGSGIA-LLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + G+G+     D++    ++  L  ++E   +     +  YP        L+AF +F
Sbjct: 235 DAAIAGTGLVYWFEDWLRPHLESGALKPVLERWWSRLSGPFLYYPSRRHMPAALRAFVDF 294

Query: 290 I 290
           I
Sbjct: 295 I 295


>gi|162451498|ref|YP_001613865.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161162080|emb|CAN93385.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 319

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 135/303 (44%), Gaps = 32/303 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D L  F  V R  SFT AA  L ++ +++S++I  LE   G+ LF R  R + LT
Sbjct: 1   MTDALDGLTTFLAVGRHKSFTAAAAALGVTPTAVSQKIKLLERRCGVVLFQRTTRRVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L +        +E     L +   +PSG LRI      G  L+   + +    YP
Sbjct: 61  EPGESLFQRLRPAIADVEDALAALGDYRGRPSGNLRITAPRVSGAWLVAPLVAQMREAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA------APHYL 174
           ++ I++ LD+  +D+     D  IRL         +++ +V + + +++      +P YL
Sbjct: 121 ELSIEVSLDDAFVDLVASGFDAGIRL------GDAVEKDMVRVPISSHSSWSIVGSPAYL 174

Query: 175 KNCREPLSIQELDKH-----NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229
                P S ++L +H      L+  G +    +E      TVD P G        V   +
Sbjct: 175 AKAGRPRSPEDLVRHRAIRQRLLASGVVYRWELERRGKTITVDVPGG-------VVTDDI 227

Query: 230 SIM-QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVIT--PSFTVYFCYPEALKNTGKL 283
            +M      G+G+A +PD  ++ +     L R++E  IT  P F +YF  P   +   KL
Sbjct: 228 GLMVALACAGAGLAYVPDQAIERDLSEGRLERVLEAFITKGPGFCLYF--PARTQEQPKL 285

Query: 284 KAF 286
           +A 
Sbjct: 286 RAL 288


>gi|330966406|gb|EGH66666.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 314

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 13/273 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VA +   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVAPTRKVSSAARRLAVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHIRMGCTEGFGSFFITPQLSHFLDNYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N     
Sbjct: 131 ISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQEYLDNHAPIQ 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVLGS 239
              +L  H  I++ D +    E   +L+ +  P  +      Q+ S   I QY   + G 
Sbjct: 190 RKADLSDHVFISYVDDLAFSSE-LLYLSNL-LPNAQA-----QLRSTSVIAQYTAALQGR 242

Query: 240 GIALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
            +A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 243 ALAILPCFLAAQDPRLLPVLAEEVNITRQFWMY 275


>gi|296108001|ref|YP_003619702.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy]
 gi|295649903|gb|ADG25750.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy]
          Length = 302

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 136/292 (46%), Gaps = 15/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F       SF+ AA++L++S S +S+QI+ LE E+ + L  R    LT+T+ G +L+
Sbjct: 7   LKGFITTVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLIRSTTRLTVTDSGHRLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +++ +LE  ++      ++ +G +R+  T+      L     +F+  YP I++ +I
Sbjct: 67  EKALQLFEQLEAVKVIATPDQLELNGVIRLYLTVTPAIPYLTKLSIQFMRQYPKIELDII 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   ++     D AI     ++ S L+ ++L +I    +A+P Y+     P ++ EL 
Sbjct: 127 VGSDTKELYSSTFDLAISFDD-VKHSKLVCKRLFSIQRKVFASPGYIAQHGLPQTLDELP 185

Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           KHN +  T   L  K +  FN    +    G       + N+   + Q  V   GI   P
Sbjct: 186 KHNCLINTLYGLQNKWV--FN--KKIIHVSGN-----FKSNNAGVLKQAAVADVGILWAP 236

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + V +   N  L+ ++ +  +P   +Y   P+   +  K+    NF   KA
Sbjct: 237 YFSVYEEIKNEALIPVLPNESSPDINLYAICPKPTVDEQKINLLLNFFCEKA 288


>gi|290509058|ref|ZP_06548429.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289778452|gb|EFD86449.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 303

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 21/299 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  W+  R F  V + GS + A+  L+++Q +  R I+GLE  +G  LF R   GL  T+
Sbjct: 4   SIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLEAALGQALFTRSQTGLLATD 63

Query: 62  QGSKLHRVTSEVY----HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             +   RV +E        LE T         +  G +R+A +  +G  +L   +     
Sbjct: 64  A-ALALRVHAEAMDNTARALERTAANFSRDRTELRGVVRVAASEVVGAEVLPPLVARLRQ 122

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P+I I+L+L N+  D+    AD A+R+  P Q   LI R+L  I +  +A   YL   
Sbjct: 123 ACPNIVIELMLSNRFQDLLHREADIAVRMVAP-QQEQLIARRLGRIELGLHATAAYLTRQ 181

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P ++ +L  H LI F    P             R         ++ +S L+ +     
Sbjct: 182 GLPATLDDLASHALIGFDSATPLVRRALQAYPRFQR-----EAFAMRTDSDLAQLSLIRA 236

Query: 238 GSGIAL----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+GI +    L D I+     L R++    + +   +    E L+++   K  R F FL
Sbjct: 237 GAGIGICQVPLADGIIP----LQRVLASDFSLNLDTWLVMHEDLRHSPACK--RVFDFL 289


>gi|26990639|ref|NP_746064.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985625|gb|AAN69528.1|AE016586_7 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 313

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 12/246 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  VA   SF  AA  L  S S+++R +  LE   G KL  R+A  +TLTE G +L
Sbjct: 20  EIQAFVSVAHKRSFVAAARALGRSPSAVTRAVQTLEDNAGSKLLNRNANAVTLTEAGERL 79

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +         EL   S    G +R A    LG+++L   L EF   +P + + +
Sbjct: 80  LPHAERLLDVQRDAADELAALSGNAQGWIRFAAPQLLGEHVLPQVLAEFSRRHPQVTLDV 139

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D      D  +R   P QSS LI   L     H YA+P YL     P   ++L
Sbjct: 140 QYSDEALDPLQGKFDFVVRGAFP-QSSELIGYPLWPYRRHLYASPAYLALAGTPQHPEDL 198

Query: 187 DKHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           D H LI      P+ ++ +++      T  RP   PR   L++ S  ++    + G+GIA
Sbjct: 199 DGHTLILH--TAPRILKAWHFCHNDQITSLRP--RPR---LRLGSGGAVYHSTLAGAGIA 251

Query: 243 LLPDYI 248
            L  ++
Sbjct: 252 RLAAWV 257


>gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075887|gb|ADJ65286.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 300

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 24/250 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +  F  AAE LH+SQ  ++RQI+ LE E+G +LF R  R + LT  G   +
Sbjct: 7   LTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTAAGKYFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R T+E++  LE  +  +  SS   SG L++   +    N+L    + +   YP++ ++L 
Sbjct: 67  RDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPEVDMRLT 126

Query: 128 ----------LDNKDIDISMDY--ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
                     ++++ ID+ + Y   DC     + + S ++    L+ +        H L 
Sbjct: 127 EYVPNLLATDIEDEKIDVGIMYRPEDC-----RRLDSHTIYAEPLLAV----LPRDHRLA 177

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
             R+ +S  EL +   I+   +I   + D             PRI  L+ N   +I+   
Sbjct: 178 G-RQSISAAELAEDAFISIPRMIAPVVYDLIQQHCQLHGF-RPRI-VLETNLQQTIVNLV 234

Query: 236 VLGSGIALLP 245
             G G+AL+P
Sbjct: 235 GEGLGVALVP 244


>gi|229178767|ref|ZP_04306130.1| Transcriptional regulator, LysR [Bacillus cereus 172560W]
 gi|228604706|gb|EEK62164.1| Transcriptional regulator, LysR [Bacillus cereus 172560W]
          Length = 300

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 146/314 (46%), Gaps = 41/314 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPTAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDIDISM--DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   ++   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLRNELDIGITFL-PVQDKEILSIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    + FN+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTV--------YFC-----YP 274
           +Q    G GI +LP    D++   N   ++I     TP+  +        Y C     + 
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIYRKDKYMCAATREFI 288

Query: 275 EALKNTGKLKAFRN 288
           E LK+T  +++F+N
Sbjct: 289 EQLKST--VRSFQN 300


>gi|254254414|ref|ZP_04947731.1| Helix-turn-helix protein [Burkholderia dolosa AUO158]
 gi|124899059|gb|EAY70902.1| Helix-turn-helix protein [Burkholderia dolosa AUO158]
          Length = 320

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 4/245 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V  SGSF  AA++L +++S++ + I+ LET +G +L  R  R  +LT+ G  
Sbjct: 25  DGVTTFVQVVESGSFALAAQRLGMTRSAVGKAIARLETRLGARLLQRTTRSQSLTDDGQA 84

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +L+  + +L     +P GKLR++  +  G + +   + +    YP ++I 
Sbjct: 85  YYDRCVRALAELDAAEADLDCGRNEPRGKLRLSVPLAFGHHCVTPIVLDLARTYPHLRID 144

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P ++  
Sbjct: 145 VSITDRFVDLIDEGIDLAVRIGTLADSTSLAVRRLGTQYGSLGAAPSYLARYGVPKTLDA 204

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  I +    +P   + ++ LA     +       L  +   +I    V G GIA L
Sbjct: 205 LKDHRTIAYSRSGVP---QPWDLLAPDGSTVRIDMQHQLSFDDVQAIAAAAVSGFGIAWL 261

Query: 245 PDYIV 249
           P +++
Sbjct: 262 PSWLL 266


>gi|27365099|ref|NP_760627.1| glycine cleavage system transcription activator [Vibrio vulnificus
           CMCP6]
 gi|27361245|gb|AAO10154.1| Glycine cleavage system transcription activator [Vibrio vulnificus
           CMCP6]
          Length = 307

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 134/299 (44%), Gaps = 33/299 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  FYV  ++GSF  AAEQL +S +++S+QI  LE  + I LF R  R +TLT +G  L 
Sbjct: 11  LYYFYVACQTGSFKLAAEQLFVSAAAVSQQIRQLEESLNIPLFIRQHRKVTLTPEGKVLF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF--------LLLY 119
               + +  L+   + L  S   P+ +L ++T     Q+ L   L  F        LLL 
Sbjct: 71  EQAQKGFAHLQEG-VRLISSDANPN-QLSVSTLPSFAQHWLVPRLTAFKKQQNEISLLLE 128

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P  Q+ +  +   ID+S+ Y     R + P I++  L+   +  +    YA  H+L +  
Sbjct: 129 PTNQL-VTFEGSKIDLSIRYG----RGKYPNIETKWLMDDLVYPVCHPIYAQQHHLHDLS 183

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVL 237
           +            IT  DLI     D +W  T  R +G     S +Q +    +++  + 
Sbjct: 184 D------------ITRADLIEDTWPDMDW-ETFMRSVGLTGGHSTIQYDGSHFVLEGALA 230

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             G+AL+   +         LVRI +  +   ++ Y C P +     K+K F  ++ ++
Sbjct: 231 VQGVALVKHSLAARYIQEGKLVRIGDIAMKTRYSYYICAPSSYFQRKKVKLFHQWLLME 289


>gi|320158893|ref|YP_004191271.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
 gi|319934205|gb|ADV89068.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
          Length = 295

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 138/296 (46%), Gaps = 21/296 (7%)

Query: 4   DW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DW   +  +  V   GSF  AA +++ + S+IS++I  LE ++G++L  R  R ++ TE 
Sbjct: 2   DWFQSVNSYIRVVEEGSFNAAARKMNTTSSAISKRIQWLEEKIGVQLLKRTTRSISQTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++         ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPDI
Sbjct: 62  GALFYQRAKLQLDGWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPDI 121

Query: 123 QIQLI--LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA---YAAPHYLKNC 177
           +IQL   L  +  ++S+D     + + + ++  + +  K   +  H    +AAP Y++  
Sbjct: 122 KIQLFTTLPGQLPELSLD-----LFISRELEQLNSLSFKATALFEHKATFFAAPSYIEKY 176

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P + ++L  HN++ +G+   + ++  N      R             +  ++      
Sbjct: 177 GMPQNAEQLVNHNILIWGEKPSRELKLNNGKRMTLR-------GNFSTTNPEALFHGAKR 229

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI L  + ++K+      LV ++ +V     TVY  YP+      + K F +++
Sbjct: 230 GMGILLSNNVMIKEELRTGALVPVLPNVHADEATVYAYYPKLDYQHTRTKLFLDYL 285


>gi|171317055|ref|ZP_02906259.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097756|gb|EDT42580.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 307

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 88/188 (46%), Gaps = 2/188 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  VA  GSFT AA ++ L     S  I  LE E+ I+LF R  R L LT +G  
Sbjct: 5   DDLALFVRVAALGSFTRAAREVDLLPGQASAAIQRLERELDIRLFARSTRSLRLTTEGEH 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   L+  +  L     +  G L+IA   DLG+N+L   + EF   +  + ++
Sbjct: 65  YLPYAREVIDTLDDGRERLNADRNELRGVLQIAAPSDLGRNVLLPWITEFRQTHQKLSVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSIQ 184
           L+L +   DI  D  D AIR   P++ +S I   L   +     A+P YL     P  I 
Sbjct: 125 LLLSDCMTDIFQDPVDIAIRY-GPVEDASYICMPLAPDNRRVLVASPSYLDRHGRPEKID 183

Query: 185 ELDKHNLI 192
           +L  H  +
Sbjct: 184 DLQNHQCL 191


>gi|163940208|ref|YP_001645092.1| LysR family transcriptional regulator [Bacillus weihenstephanensis
           KBAB4]
 gi|163862405|gb|ABY43464.1| transcriptional regulator, LysR family [Bacillus weihenstephanensis
           KBAB4]
          Length = 305

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 139/293 (47%), Gaps = 40/293 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   ISIELRQLEYFLAVSKELHFTRAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   + +F   YP
Sbjct: 67  EAGRVLLSHSKTIFHEVEQARSAIQDLNGLHHGSLTIGSLLTVVNYLLPPAILDFNKQYP 126

Query: 121 DIQIQLI----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I++ ++          L   ++DI + +         P+Q   ++   L    +     
Sbjct: 127 NIELSVLGLRTGEIREKLLQNELDIGITFL--------PVQDKEIVSIPLYKSELTLVVP 178

Query: 171 PHYLKNCREPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQ 224
             +    R+ +SI+EL  + LI         +LI    ++FN+     +PI       L+
Sbjct: 179 TSHSLTERKYVSIEELQDYPLILLPKNFYLTELITSHCQNFNFKP---KPI-------LE 228

Query: 225 VNSYLSIMQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +++  S++Q    G GI +LP    D++  ++   ++I     TP+  +   Y
Sbjct: 229 ISTMESLIQMVAQGMGITVLPKPYIDFLQNEHIQAIKIENP--TPTIDIGLIY 279


>gi|83943385|ref|ZP_00955844.1| putative transcription regulator protein [Sulfitobacter sp. EE-36]
 gi|83845617|gb|EAP83495.1| putative transcription regulator protein [Sulfitobacter sp. EE-36]
          Length = 295

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 109/245 (44%), Gaps = 11/245 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RVF  VAR G F  AAE L  + +S+S  I   E  +G++LF R +R + LT  G 
Sbjct: 6   FGDIRVFVEVARRGGFRAAAEHLQQAPASVSEAIQRFEDRLGVRLFERSSRSVVLTRAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L+  +      LE    ++     + +G LR++     G   L   +  F   +P + +
Sbjct: 66  QLYDKSLPAIVDLEGALDDIHAQKDEVAGTLRLSAPYSAGPFFLDDLVARFATAFPTVDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D+K +D+     D AIR    +   +        + M    +  YL     P   +
Sbjct: 126 EVIYDDKKVDLLTSGIDAAIRSNTLLGPDTHAVSVGPELEMTIVGSAEYLAGKGTPAHPR 185

Query: 185 ELDKHNLI--TFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           ++ KH+ I   FG    L P   +    L T+ +P  +PR+     N   S++ Y   G 
Sbjct: 186 DILKHDAICYAFGSGAHLAPWGFDGPEGLYTI-QP--KPRMVA---NDMRSLLTYAQQGL 239

Query: 240 GIALL 244
           G+A L
Sbjct: 240 GLAYL 244


>gi|320155480|ref|YP_004187859.1| putative transcriptional regulator LysR family [Vibrio vulnificus
           MO6-24/O]
 gi|319930792|gb|ADV85656.1| putative transcriptional regulator LysR family [Vibrio vulnificus
           MO6-24/O]
          Length = 307

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 134/299 (44%), Gaps = 33/299 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  FYV  ++GSF  AAEQL +S +++S+QI  LE  + I LF R  R +TLT +G  L 
Sbjct: 11  LYYFYVACQTGSFKLAAEQLFVSAAAVSQQIRQLEESLNIPLFIRQHRKVTLTPEGKVLF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF--------LLLY 119
               + +  L+   + L  S   P+ +L ++T     Q+ L   L  F        LLL 
Sbjct: 71  EQAQKGFAHLQEG-VRLISSDANPN-QLSVSTLPSFAQHWLVPRLTAFKKQQNEISLLLE 128

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P  Q+ +  +   ID+S+ Y     R + P I++  L+   +  +    YA  H+L +  
Sbjct: 129 PTNQL-VTFEGSKIDLSIRYG----RGKYPNIETKWLMDDLVYPVCHPIYAQQHHLHDLS 183

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVL 237
           +            IT  DLI     D +W  T  R +G     S +Q +    +++  + 
Sbjct: 184 D------------ITRADLIEDTWPDMDW-ETFMRSVGLTGGHSTIQYDGSHFVLEGALA 230

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             G+AL+   +         LVRI +  +   ++ Y C P +     K+K F  ++ ++
Sbjct: 231 VQGVALVKHSLAARYIQEGKLVRIGDIAMKTRYSYYICAPSSYFQRKKVKLFHQWLLME 289


>gi|239503281|ref|ZP_04662591.1| putative transcriptional regulator [Acinetobacter baumannii AB900]
          Length = 288

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 117/266 (43%), Gaps = 28/266 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L++F  V   G+   A+ QLH   S+I+ +I  LE E+G  LFYR  + L LT  
Sbjct: 1   MDITQLKMFQTVVECGTMAKASLQLHCVPSNITTRIKQLEEELGAPLFYREGKSLKLTPS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQES---SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G     +  +  HK+     E + S      PSG L+I          L   L ++   Y
Sbjct: 61  G----EIFLDYCHKILALCDEAKRSIHPDAPPSGPLKIGAIESSATTRLPNLLAKYHQRY 116

Query: 120 PDIQIQLILDNKD---IDISMDYADCAI---RLRKPIQSS-SLIQRKLVTIHMHAYAAPH 172
           P++ IQ+I        +DIS    D AI    +  P+ +  S+ Q  +V I  H+    H
Sbjct: 117 PEVSIQIITGTWKQLLVDISQHKLDGAIVAGNIEFPMLNKLSIYQEDMVLIASHSLGEIH 176

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
               C+E L  +E+    + T G      +ED+  L  +  PI         + SY +I+
Sbjct: 177 ----CQEDLIGKEI---FMWTEGCPYRAALEDWLKLKNISLPI-------TSITSYATII 222

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRI 258
                GSG+AL+P  I K   NL  I
Sbjct: 223 GCVSAGSGVALVPKSIYKQYKNLAHI 248


>gi|34496154|ref|NP_900369.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34330285|gb|AAQ58375.2| probable transcriptional regulator LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 291

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 125/250 (50%), Gaps = 20/250 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  +   GSFT AA++L ++ S++SR ++ LE ++G++L  R  R L LT +G+ 
Sbjct: 5   ESLIAFTTIMDCGSFTAAADKLGVTASNVSRSLAQLEKQLGVRLLTRTTRRLDLTAEGAW 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   L   + +LQ ++ +PSG +R+   I +  +LL  +L  F   YPDI+++
Sbjct: 65  LLERARVILENLNDAEQQLQAAAARPSGLVRVNAAIPVLDHLLAPHLAGFQARYPDIRLE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L      +D+  + AD AIR+  P+  S+L  R L    +   AAP YL+    P +  +
Sbjct: 125 LAGAEAVVDLIEERADLAIRV-GPLADSTLNARLLCESPLRIVAAPDYLRRHGRPRTAAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN------SYLSIMQYCVLGS 239
           L  H  + F    P  +  +        P+G    + L+VN      S  ++    + G 
Sbjct: 184 LQAHRQLGFTS--PASLNLW--------PLGA---NGLKVNPSPAASSGATLRALALHGC 230

Query: 240 GIALLPDYIV 249
           GIA L D++V
Sbjct: 231 GIACLADFLV 240


>gi|34496594|ref|NP_900809.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34102448|gb|AAQ58814.1| probable transcriptional regulator LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 301

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 126/295 (42%), Gaps = 11/295 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  +AR  SFT A  +L +S S++S+ +  LE  +G+ L  R  R +  TE G  
Sbjct: 7   EALQAFCAIARHRSFTRAGAELGVSASALSQTMRQLEGALGVPLLTRTTRQVAPTEAGEA 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    ++     E  ++  +P G+LR+       Q L    L +F   +P ++++
Sbjct: 67  LLARLAPALDEIRAALDEAGQAQGQPVGRLRVTLPHTAAQLLFYPALADFAARHPRLRLE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L ++N  +DI     D  +R  + +Q           +     AAP YL     P   ++
Sbjct: 127 LDVNNGLVDIVAQRFDAGVRFGEALQPGMQALPVSRPLRFVVAAAPGYLSRRGAPQHPED 186

Query: 186 LDKHNLIT--FGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H  +   FG       + + W    D  P+       L  N   +++   + G+G+A
Sbjct: 187 LAGHACLGYRFGG-----GQHYRWQFVRDGLPLQLAVDGPLIANDNTAMLHAALGGAGLA 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L + +++       L  +++    P+  +Y  YP   +   KL+A   F+  +A
Sbjct: 242 YLAEPLIEPWVAAGKLAVVLDGYAPPAEALYLYYPHRPQQPAKLRALIAFLRERA 296


>gi|26988900|ref|NP_744325.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24983710|gb|AAN67789.1|AE016410_5 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 328

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 128/283 (45%), Gaps = 16/283 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF VVAR  +F  AAE+L ++Q+++++QI GLE  + ++LF R  RGL LT+ G  
Sbjct: 43  NALRVFEVVARHLNFRLAAEELGVTQAAVAQQIRGLEASLNLRLFERLPRGLALTDAGLG 102

Query: 66  LHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               +  + + L    I+     ++P +  L ++ T       L   L  F   +PDI +
Sbjct: 103 ---YSGSIRNAL--AMIDEATRLLRPQASHLTVSVTPTFASKWLIPRLGSFAHSHPDIDL 157

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++  ++    + D  + A+R  KP   + L    L+   + A A+P   +  + P S +
Sbjct: 158 RVLATDRLSHFNTDGVNLAVRYGKPDIGAGLNSELLMEQRIVAVASPTLFEASKTPTSFE 217

Query: 185 ELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L    L+    D  P+      +LA V    G+     L+ N     +   + G GIAL
Sbjct: 218 QLQAFTLLHDAHDFWPR------FLAQVFPQHGQATARNLRFNQTSLAIDAAISGQGIAL 271

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
                V D+     L ++    +    + Y  +P  L+    L
Sbjct: 272 ASLAFVSDDIVAGRLTQVFAQQLRLDKSFYLVWPRKLQQPESL 314


>gi|93006155|ref|YP_580592.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis
           K5]
 gi|92393833|gb|ABE75108.1| transcriptional regulator, LysR family [Psychrobacter
           cryohalolentis K5]
          Length = 311

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 109/248 (43%), Gaps = 9/248 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  + SF+  A +  +S S +SR I  LE  +G +LFYR+ R +T TE G    
Sbjct: 12  LLFFIEVFDAQSFSVVARKEGVSASKVSRIIKQLEDSLGQQLFYRNTRAVTPTEAGRVFM 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   +   Q ELQ+ +++P G +RI   +  GQ  +   L +    YP +QI L 
Sbjct: 72  RYAKSMTESMSAAQQELQDRTLEPGGLIRINAPVFFGQRHIAPWLPQLSAQYPKLQIDLS 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  ID      D   R+   +  S+   R       H  A+P Y+    +     +L 
Sbjct: 132 LTDDFIDPHHYATDVIFRIGT-LHDSAFHARIFGEQTYHLAASPSYISTHGKLQVPADLT 190

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
            H  + + G   P       WL   +     P +  + L  N+  S++   + G GI L 
Sbjct: 191 HHKCLLYKGSTGPN-----RWLFKTESEDWTPFLAPALLMSNNAESLLVSALKGMGIVLF 245

Query: 245 PDYIVKDN 252
           PD+++ ++
Sbjct: 246 PDWLIGEH 253


>gi|332286702|ref|YP_004418613.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330430655|gb|AEC21989.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 294

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 93/185 (50%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A+  + +  A  L ++  + +R++  LE  +G++L  R  R ++LT +G    
Sbjct: 5   LSFFVLLAQHKNLSAVARALDVTPPAATRKLMQLENRLGVRLANRTTRSISLTSEGELFL 64

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++T +  +     +P G LR+  ++  G+  +     +F L YPDI++ L 
Sbjct: 65  EQAKRILADIKTMEDSVSNHRQQPRGLLRVNASLGFGRRRISALASKFALSYPDIELDLQ 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +K +D+  +  D AIR    +    L+ R+L++   +  A+P YLK   EP S+ +L 
Sbjct: 125 VTDKPVDLVANNIDLAIRF-GSLPDRRLVARRLLSNRRYLCASPKYLKKHGEPESLADLA 183

Query: 188 KHNLI 192
            H  I
Sbjct: 184 HHRCI 188


>gi|157375640|ref|YP_001474240.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318014|gb|ABV37112.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 315

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 132/289 (45%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  +A +GS T AAE+L +S S +S+Q+  LE ++ ++L  R  R L LT++G   
Sbjct: 11  QMVLFNALATTGSLTKAAERLEVSVSHVSKQLHILEDKLNVQLINRSTRSLALTQEGKDF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   + +    + +S  + SG +R+A +   G   +   L      YP +  ++
Sbjct: 71  ADYCDQIVGLIHSANTLMTDSRDEVSGNVRLALSCSFGTLHVLPALDALQKKYPSLTTEV 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D      + I +  + QR +V  H    A+P Y++    P    +L
Sbjct: 131 SLFDYKVDMLEEEIDLWFTTFEEINAGYVAQR-IVDTHFILLASPDYIQVHGAPTHPDDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN +T+     K     +WL   D    + ++S   +V+   +I    + G GI  + 
Sbjct: 190 KAHNCVTYHS---KNRSYTHWLFAKDEEQLDVQVSGNYRVDKAEAIRDAVLAGRGIGYIA 246

Query: 246 DYIVKD---NPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y++ D   +  L+ +M D   T    VY  YP+      +LK   +F+
Sbjct: 247 TYLLTDELESGKLIPLMSDWKPTQKMPVYAVYPKYQNLPVRLKTIIDFV 295


>gi|229526142|ref|ZP_04415546.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229336300|gb|EEO01318.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
          Length = 289

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 129/279 (46%), Gaps = 33/279 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GS + AA++L++S+S +S+ +  LE E+G+ L  R  R  TLT+ G + 
Sbjct: 8   QMAIFAHVVEAGSVSAAADKLNVSKSVVSQHLKTLENELGMVLMKRTTRRQTLTDVGEQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+    E+      +   +P G+ RI  +  L  +L+   + E +  YP ++ +L
Sbjct: 68  YLKCKELNSIAESAWDIASDYQTEPQGRFRITASHALMDSLVAPVIAELMTQYPKLKPEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI----------HMHAYAAPHYLKN 176
           I D++ +D+  +  D AIR+  P   SSL Q+++                   +P Y+ N
Sbjct: 128 IADDQHLDLMANDIDMAIRI-GPSHDSSLKQKRIGEFRDVLCGLEERRTKLNESP-YIAN 185

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             +P  I+    H+         +  E   W       I   + SC   NS+ + +    
Sbjct: 186 VWQPKQIE----HHF--------RSAEGQTW-------IYRQQASC-TANSFHTCLALIR 225

Query: 237 LGSGIALLPD-YIVKDNPNLVRIMEDVITPSFTVYFCYP 274
            G+G+ ++PD Y+ +    LV ++ +   P  TVY   P
Sbjct: 226 SGAGVGIVPDFYLSERGSQLVNVVPNYTLPINTVYTLTP 264


>gi|171319209|ref|ZP_02908327.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095589|gb|EDT40551.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 312

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 130/300 (43%), Gaps = 38/300 (12%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+ G  
Sbjct: 10  NRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTDAGRA 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++ H  E+    +   +    G LR++  ID G  ++   +      +P + ++
Sbjct: 70  FYDACRDIVHATESALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAIVALRDAHPGLDVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSS----SLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            I +++ +D+  D  D AIRL +   S+     L Q +   +   A+ A H L   R+P 
Sbjct: 130 QIANDRVVDLVADNLDVAIRLGRLADSNYRAVQLGQYEKWVVASPAFVARHGLP--RDPD 187

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP---------IGEPRISC---LQVNSYL 229
           ++  L                  F  L+T  RP          G   + C   +  N+  
Sbjct: 188 ALAAL-----------------PFVMLSTPSRPHTLELDDTSGGHASVRCTAPVVSNTAT 230

Query: 230 SIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +     + G G   L D+ + ++     LVR++    +    ++  YP     + K++AF
Sbjct: 231 ACRAIALAGGGFGFLTDFSIAEDVAAGRLVRLLPAWRSARAGIHAVYPSTRLPSRKVRAF 290


>gi|17549458|ref|NP_522798.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431711|emb|CAD18388.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 328

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 139/288 (48%), Gaps = 17/288 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW+ LR    VARSGS   AA  L +S ++  R+I  LE  VG  LF R   G  LTE
Sbjct: 3   TLDWNDLRYLLAVARSGSAAGAARALGVSHATALRRIQALEQVVGSPLFDRLQTGYALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +   +       L  T+ E++  + + +G +R  TT  LG +L+   L  F   YP 
Sbjct: 63  SGRRFVAMGEAFERALLDTRREIEGQATELAGTIRFTTTDSLGYSLMPDILAAFRARYPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++ + N  +D+    AD  +R+       S + R+LV +    YAA     + REP 
Sbjct: 123 ITVEMKVTNARLDLERREADVMLRVTD-APPPSWVGRRLVRLDAALYAA-PAYLDGREPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S++ LD   L+    L    + +  WL +    IG  R++    +S+L + +    G G 
Sbjct: 181 SLESLDW--LMPNSPLGQGAVAE--WLRSR---IGGARVAA-SADSFLVLRRLAERGLGA 232

Query: 242 ALLPDYIVKDNPNLV---RIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +LP ++ +    LV    + ED+  P +     +P+ L++ G+++AF
Sbjct: 233 VVLPRFLARQR-RLVWLEDVPEDLSVPLW--LLTHPD-LRHAGRVQAF 276


>gi|83748060|ref|ZP_00945089.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83725246|gb|EAP72395.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 324

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 1/187 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR+   +A +G+ + AA QL    ++ S  +  +E E+G +LF R  R +  TE G +
Sbjct: 5   DDLRLLVRIADAGNLSAAARQLGWLPATASAALKRVEGELGARLFERTTRSMRPTEAGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    L+     L +     +G +RIA T DLG+NLL+  L  F   +P +++ 
Sbjct: 65  YLGHARQALEALDEGAESLGQDRTALAGPIRIAATSDLGRNLLRPWLDAFCDEHPGVRVT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++  D+  +  D  +R    +Q S+L++R L +       AP Y +    P     
Sbjct: 125 LVLGDRLADLMREDIDFGLRYGH-LQDSALVRRPLASHPRVIVGAPSYFRRHGRPAHPDA 183

Query: 186 LDKHNLI 192
           L +H  +
Sbjct: 184 LREHRCL 190


>gi|295706046|ref|YP_003599121.1| LysR family transcriptional regulator [Bacillus megaterium DSM 319]
 gi|294803705|gb|ADF40771.1| transcriptional regulator, LysR family protein [Bacillus megaterium
           DSM 319]
          Length = 299

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 12/248 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W +L  F VVA++  FT AAE+L ++Q ++SR IS LE+E+G+ LF R  R + L   G
Sbjct: 2   EWQQLEYFNVVAQTEHFTKAAEKLSIAQPTLSRSISKLESELGVPLFERKGRQVILNRYG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +  T++V +++E  + EL +      G +  A    LG + +   +  FL  YP++Q
Sbjct: 62  RLFYERTAKVLNEMEEAKRELSDLIHPHRGSISFAFLKSLGASSVPKLVHAFLQEYPNVQ 121

Query: 124 IQLILDNKDIDI-SMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPL 181
            Q+  +  +I +  +   +    +    +S + IQ + L    ++AY    +    ++ L
Sbjct: 122 FQIFENATNIMLDQLQTGEIDFCMSSVTESRAGIQWEYLWKDELYAYVPDTHSFASKQVL 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLG 238
           SI EL   + I          + +      D+   E  I      +   +L+++ +    
Sbjct: 182 SISELAHESFIA-------LKKGYGSRTIFDQLFEEAEIVPNITFEGEEFLTVIGFVAAH 234

Query: 239 SGIALLPD 246
            G+ALLP+
Sbjct: 235 LGVALLPE 242


>gi|260460119|ref|ZP_05808372.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259034330|gb|EEW35588.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 302

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 137/296 (46%), Gaps = 26/296 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +R F  VAR GS   A E+L ++ S++ R+++ LE  +G ++F +   G  LT  
Sbjct: 2   IDWDDVRYFLAVARGGSVRAAGERLGVNHSTVLRRVAQLEERLGARMFEKLPSGYRLTAA 61

Query: 63  GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G ++  + +++    H+LE T++  ++ SV+  G LR+     L  +LL  +  EF  L+
Sbjct: 62  GEEVLELANQMEASSHQLE-TRVFGRDQSVR--GLLRVTLAPTLATHLLMPDFAEFARLH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-- 177
           PDI++ ++   +  +++   AD AIR+        +  RK + +++H    P        
Sbjct: 119 PDIEMDVLSSGELANLTNREADVAIRV--------VYDRKTLPLNLHGLKGPELFGAVYM 170

Query: 178 -REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            R+ L+       + I +  ++        W +      GE R + +   +  +  Q   
Sbjct: 171 SRDRLAAWRAGASDPIRW--IVISIHGIPEWASE-----GELRTTGVPFRTTDAAAQIVA 223

Query: 237 L--GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  G GI  LP ++   +  LVR+    +    T++       + T +++ F  F+
Sbjct: 224 VRQGLGITTLPCFVGDADLLLVRVPGTELHLYGTLWLLTQGETRKTKRVRLFTEFV 279


>gi|152980333|ref|YP_001353265.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151280410|gb|ABR88820.1| LysR-family transcriptional regulator [Janthinobacterium sp.
           Marseille]
          Length = 293

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 126/277 (45%), Gaps = 20/277 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D L+ F  V  SG+   AA+ L  + S++SR ++ LE ++   L  R  R + LT
Sbjct: 1   MDINSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRALARLEEKLATTLLTRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L      +   L+  +  ++    +PSG+LRI        +++  ++ EF  LYP
Sbjct: 61  DEGRLLLTKARAILAALDEAEESIRVRRQRPSGRLRIDAASPFILHVIVPHVAEFRELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++L  +++  D+     D AIR+ + +  S+L  R L +  M   A+P YL+    P
Sbjct: 121 DITLELTSNDQIADLLEHRTDIAIRVGE-LTDSTLHARPLRSGAMAILASPDYLRRHGIP 179

Query: 181 LSIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               +L +H  + F     G+  P   +   WLAT            +  +S  ++    
Sbjct: 180 KKPADLAQHETLGFLQYENGNSWPLRHDGGEWLATT---------PAIYASSGETLRALA 230

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC 272
           + G GIA L +++ K +     I    + P    Y+ 
Sbjct: 231 LAGQGIACLSEFMTKQD-----IAAGTLVPILAKYYT 262


>gi|152969636|ref|YP_001334745.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954485|gb|ABR76515.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 311

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 127/291 (43%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R +  +  +GS + AA Q+  +Q+++SR++  LE  +G+KL  R    + LT+ G + +
Sbjct: 13  MRTYIRIVEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKLILRTTHAMKLTDDGERCY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +V       + +L+ +  +P G LR+      GQ  L   L  FL  +P + ++ +
Sbjct: 73  RHARQVVDAWLALEDDLRIADDRPVGVLRVRAPHAFGQQQLLAPLVAFLQRHPQLSVEWM 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D   D  DCAIR+   +  ++ +   L  +     A+P  L       S++ L 
Sbjct: 133 LNDNTVDFLSDNIDCAIRVGAEVDPAT-VSVLLAEVPRCVVASPELLAKYPPLTSLEALS 191

Query: 188 KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               I        ++  +       ++T   P       CL  +S        + G G+A
Sbjct: 192 GLPWIAINTFYQHEVRLRHQASGQIVSTAITP-------CLSTDSLYVARNTALAGLGVA 244

Query: 243 LLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  + V ++    R++E        S  V+  YP A     +L+ F + +
Sbjct: 245 MVSSWTVVEDIAAGRLIELFPQWRPASLPVHLVYPWARYYPTRLRKFLDLM 295


>gi|146307746|ref|YP_001188211.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575947|gb|ABP85479.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 293

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 37/237 (15%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  F  +A +GSF+ A E+LHL+Q ++S++I+GLE ++G++LF R  R + LT+ 
Sbjct: 1   MDLANLNAFIAIAETGSFSEAGERLHLTQPAVSKRIAGLEQQLGVRLFDRLGREIGLTQA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++ + L+ T+  L   S + SG+L +AT+  +G + L   L+ F   +P  
Sbjct: 61  GRALLPRAYQILNVLDDTRRALTNLSGEVSGRLTLATSHHIGLHRLPALLRAFTRAHP-- 118

Query: 123 QIQLILDNKDIDISMDYADC------------AIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
             Q+ LD + +D  + Y +             A   R+PI++ ++    L  +     AA
Sbjct: 119 --QVALDIQFLDSEVAYEEVLHGRAELAVITLAPETREPIRAVAVWDDPLDFV-----AA 171

Query: 171 PHYLKNCREPLSIQELDKHNLI-----TF-----------GDLIPKCMEDFNWLATV 211
           P +     E +S+ ++ +H  +     TF           G L P      N+L T+
Sbjct: 172 PEHPLARAEAISLADVARHPAVFPGGNTFTHHIVQRLFEAGGLTPNIAMSTNYLETI 228


>gi|113868439|ref|YP_726928.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113527215|emb|CAJ93560.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 310

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 1/169 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A +GSF+ A  +L L+ +++SR ++ LE  +G++LF R  R LTLTE G + 
Sbjct: 6   NLESFVRSAETGSFSAAGRRLALTPAAVSRNVAMLERNLGVRLFQRSTRKLTLTEAGERF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     L+     +     +P+G L+++     G   +   L +FL  YP I+ + 
Sbjct: 66  LASIGGNLDALQAAIAAMSNDHGEPAGVLKVSLAPSFGVAYVMPLLPDFLQRYPAIRPEW 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
             +N+ ID+  +  D AI     + +  L+ R L   H+ A A+P YL+
Sbjct: 126 HFENRAIDLIAEGFDAAIGGGFEL-APGLVSRPLAPAHIVAVASPAYLR 173


>gi|293609741|ref|ZP_06692043.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828193|gb|EFF86556.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122963|gb|ADY82486.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 309

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 126/273 (46%), Gaps = 11/273 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE 
Sbjct: 3   DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLEHEMDVILLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+    E  +I + E      G LRIATT DL    L   L  ++  +  +
Sbjct: 63  GQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHLIPALSHWMSAHRGL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + ++ ID+  +  D A+R+   P+ +SSS+I    V   +   A+P YL      
Sbjct: 123 SVHFEVGHRYIDLIEERIDIAVRMSSTPVEESSSVIPMAFVDQIL--VASPSYLNQSSPI 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +   +L  H L++   +       F  + T +    E + S LQ N+       C  G G
Sbjct: 181 VHPNDLRDHELLSINVMNDAHHFHFQHVKTGETLNVEMQ-SRLQSNNLQVAKALCQQGHG 239

Query: 241 IA---LLPDYIVKDNPNLVRIMEDVITPSFTVY 270
           IA    L       N +L+ +M D   P+FT+Y
Sbjct: 240 IARILYLDAQKELKNGSLIELMPDWKLPTFTLY 272


>gi|89071933|ref|ZP_01158529.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89052034|gb|EAR57485.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 301

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 122/242 (50%), Gaps = 9/242 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F +V    SF+ AA  ++L  S++SRQ+S LE  +G++L  R  R + LT +G    
Sbjct: 7   IETFQLVVEHKSFSGAAHAMNLVPSAVSRQVSELEKWLGVRLLQRTTRSIGLTTEGRAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   +E  +  +  ++    G+LRI   + LG+ +L   L  F   +P++++ L 
Sbjct: 67  AKMALISQNVEELK-GVTPATATLKGELRITAPLILGKYILPPILSLFRKQHPEVKLSLF 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+++++  +  D A+R+ + +  S LI R L    +   A P+Y++   E L  Q+L 
Sbjct: 126 LTNRNVNLIEEGYDLALRVGELV-DSELIARSLGEYKIKTVATPNYIQCNGEVLIPQDLK 184

Query: 188 KHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           +H  LI      P+      W   ++  + + +++  ++ N    + ++C+   GI  LP
Sbjct: 185 QHTCLINSARQTPR-----RWTYQMNDKVIQIKVNGEIESNDSDVLREFCLQDQGILQLP 239

Query: 246 DY 247
           D+
Sbjct: 240 DF 241


>gi|228921122|ref|ZP_04084454.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838538|gb|EEM83847.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 300

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 24/285 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE E+G+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHELGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPLTILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +I++ ++ L   DI   +   +  I +   P+Q   +I   L    +       +    R
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELHIGITFLPVQDKEIISIPLYKSDLTLVVPTGHRLAER 181

Query: 179 EPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
             +SI EL  + LI         +LI    + FN+     RPI       L++++  S++
Sbjct: 182 NHVSIAELQNYPLILLPKNFFLTELITSYCQKFNF---KPRPI-------LEISTMESLI 231

Query: 233 QYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           Q    G GI +LP    D++  +N   ++I     TP+  +   Y
Sbjct: 232 QMVSKGMGITVLPKPYIDFLQNNNIQAIKIENP--TPTIEIGLIY 274


>gi|228985520|ref|ZP_04145677.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774285|gb|EEM22694.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 300

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 144/312 (46%), Gaps = 37/312 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPTAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDIDISM--DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q    I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLRNELDIGITFL-PVQDKETISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    + FN+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLPDYIVK--DNPNLVRIMEDVITPSFTV--------YFC-----YPEA 276
           +Q    G GI +LP   +    N N+  I  +  TP+  +        Y C     + E 
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQSIKIENPTPTIEIGLIYRKDKYMCAATREFIEQ 290

Query: 277 LKNTGKLKAFRN 288
           LK+T  +++F+N
Sbjct: 291 LKST--VRSFQN 300


>gi|197295106|ref|YP_002153647.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195944585|emb|CAR57189.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 310

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 6/190 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VAR GSF  AA +LH++  ++ +QI  LE   G+ LF R  RG+ LT++G+ 
Sbjct: 18  NALRAFDAVARHGSFAGAAAELHVTHWAVGKQIRLLEDWFGLPLFDRRPRGVVLTDEGAA 77

Query: 66  LHRVTSEVYHKLETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L    S  + +L T  + L+ ++   + SG +R+   +      L   L +F   YPDI 
Sbjct: 78  LLNDVSHAFERLGTAVVRLRHNTFTQRISGVVRVNVPMSFALCWLLPRLADFHARYPDID 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-S 182
           +++   ++ +    D  D  +R   P Q + ++ R L+         P  L+  + P+ S
Sbjct: 138 VRVSTTSRKLRYVADAFDIGVR-SGPEQGAGVVSRPLMPDLRVPACNPALLR--QHPIQS 194

Query: 183 IQELDKHNLI 192
           + +L  H L+
Sbjct: 195 VADLRHHTLL 204


>gi|91780897|ref|YP_556104.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91693557|gb|ABE36754.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 329

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 117/266 (43%), Gaps = 9/266 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+ R F +VA +G F+ AA QL +  S ++++++ LE E+G  LF R  R + LT  G  
Sbjct: 29  DQARAFLLVAETGGFSSAARQLRVVPSVVTKRVTQLEAEIGRPLFVRTTRRVELTPTGKA 88

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++    +    ++     + SG+L++     L    L   +  FL+ +P + ++
Sbjct: 89  ALAHARDMVLAYDRMTGDMTGDVSELSGRLKVKAPSALTYLHLAKVINRFLIRHPKVTLE 148

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++ ++ + +  D  I    P     + +  L  I    +A+P YL     PL  ++
Sbjct: 149 LLLIDRPVNPATEGFDLVITGLPP-SYDQIDEIPLFPIQRMLFASPEYLAEMGTPLQPED 207

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  + +  L        N     VD  +     S  Q N    + Q    G GI +L
Sbjct: 208 LAHHRCLQYSYLSAGMTWTLNGRHGQVDVHVN----STFQTNDIQVMHQAVTDGLGIGIL 263

Query: 245 PDYIVK---DNPNLVRIMEDVITPSF 267
           P Y  +   +N  L+ ++E+   P F
Sbjct: 264 PGYAAQKALENGRLIAVLENFALPEF 289


>gi|330446294|ref|ZP_08309946.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490485|dbj|GAA04443.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 304

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  SFT AA+ L +S++ +S+ +  LE  +G++L  R  R   LTE G   
Sbjct: 7   QMVVFNALTKQQSFTKAAQLLEISRTQVSKLVQQLEERLGVQLVQRTTRSFALTESGRIF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   +V  ++   + EL        G LR+        N +   + EF   +P + ++L
Sbjct: 67  AKHCEKVVDEINEAESELLALGDSQQGSLRVGIAQSFASNHVAPYINEFHERHPLVNLEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I           + R L        A+P YL     P    +L
Sbjct: 127 SLFDHRVDLIAEQLDLWIGFMDS-PPEGFVARHLTNCDFVLVASPDYLAKHGVPYHPDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN IT+     +  +D  W  ++     + +++   +V+S  +I    + G+G+  L 
Sbjct: 186 KQHNCITY---FSRERKDNIWNFSLKEEELQVKVTGNYRVDSADAIRDATIAGNGVGYLA 242

Query: 246 DYIVKD---NPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y++KD   +  L+R+M E  +T    +Y  YP       K+  F  FI
Sbjct: 243 TYLLKDEIRHGKLIRLMPEWQLTQHMPLYAVYPRHKYLPTKVNLFIEFI 291


>gi|325915662|ref|ZP_08177967.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325538079|gb|EGD09770.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 268

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 1/171 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + L  F +VA +     A+     S++++SR+I+ LE ++G++L  R ARGL LTE
Sbjct: 26  TMDLNALLDFALVAANQGLGKASRASGRSKATLSRRIAELEEQLGVRLVERSARGLRLTE 85

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L   T     ++       +E    P G+LR+A+ +   Q  +     EF   YP+
Sbjct: 86  AGQVLMERTEVPLSEVAEAMAAAREGLSTPRGRLRVASPVLFSQLAMGRIGAEFCAAYPE 145

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
           I ++++ +++ +D+  +  D AIR+  P   SSL+ R      +   AAP 
Sbjct: 146 ITLEVVAEDRTVDLVEEQFDVAIRI-NPSPDSSLVGRCFAKDRLVVVAAPS 195


>gi|152986512|ref|YP_001348373.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961670|gb|ABR83695.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 307

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 133/284 (46%), Gaps = 11/284 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +GSF+ AA +L  ++S +S++I  LE  +G+ L  R  R   +T+ G   H   
Sbjct: 10  FVTVVEAGSFSEAARRLGTAKSVVSQRIQQLERHLGVVLIER-GRVFRVTQLGRHYHDFC 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            +V   +   +  +Q       G LRIA  +    +L    + EF L+YP++++ +  D+
Sbjct: 69  VQVLGDVRDMEESIQSFDGGLHGVLRIAVPVAFVAHLAP-LIAEFSLIYPELKMDIDADD 127

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+++   D A+R+   ++ S+L+ R++         +P YL     P S +EL +H+
Sbjct: 128 RHVDLNLGRYDAAVRV-GVLEDSALVARRITANRHVICGSPGYLDRKGRPASAEELREHD 186

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
               G L  +      W   V+      RI S ++ ++   ++   + G G++++P ++ 
Sbjct: 187 ----GLLSMRRAHHGMWRLGVEGREQSFRIRSKMRSDNADILLGATLAGVGLSIMPTFLA 242

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                   L  ++   + P   +   Y  A + + K+ AF  F+
Sbjct: 243 GAYLLAGQLEIVLPGCVPPGGEISVVYRRAQRASPKINAFVEFL 286


>gi|37676797|ref|NP_937193.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37201341|dbj|BAC97163.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 295

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 138/296 (46%), Gaps = 21/296 (7%)

Query: 4   DW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DW   +  +  V   GSF  AA +++ + S+IS++I  LE ++G++L  R  R ++ TE 
Sbjct: 2   DWFQSVNSYIRVVEEGSFNAAARKMNTTSSAISKRIQWLEEKIGVQLLKRTTRSISQTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++         ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPDI
Sbjct: 62  GALFYQRAKLQLDGWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPDI 121

Query: 123 QIQLI--LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA---YAAPHYLKNC 177
           +IQL   L  +  ++S+D     + + + ++  + +  K   +  H    +AAP Y++  
Sbjct: 122 KIQLFTTLPGQLPELSLD-----LFISRELEQLNSLSFKATALFEHKATFFAAPSYIEKY 176

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P + ++L  HN++ +G+   + ++  N      R             +  ++      
Sbjct: 177 GMPENAEQLVNHNILIWGEKPSRELKLNNGKRMTLR-------GNFSTTNPEALFHGAKR 229

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI L  + ++K+      LV ++ +V     TVY  YP+      + K F +++
Sbjct: 230 GMGILLSNNVMIKEELRTGALVPVLPNVHADEATVYAYYPKLDYQHTRTKLFLDYL 285


>gi|322832349|ref|YP_004212376.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167550|gb|ADW73249.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 296

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 121/278 (43%), Gaps = 6/278 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR  SFT AA +L ++QS++S+ IS LE ++ I+L  R  R ++ T
Sbjct: 1   MKRNLNDLLYFITVARESSFTRAAAKLGVTQSALSQAISALEEDMQIRLLTRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L     +    +      L E   KP+G +RI     + + +L   L   L  YP
Sbjct: 61  SAGERLLLTIGDHVDGILAELDMLTEMRDKPAGTVRITCGPHVLKTILLPKLSPLLKHYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++   ++   +I  D  D  +RL   I    +       + M A A+P Y      P
Sbjct: 121 DIRLEFDANHGFRNIVADRFDAGVRLGDTIDKDMIAIPISPKLQMAAVASPEYFATHAMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  +L +HN I         +  + W     + P+       L  N+   ++   + G 
Sbjct: 181 QTPHDLLQHNCINMRQATSGGL--YVWEFDNEEGPVNVRVTGQLTFNTTAHMVDAALAGL 238

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYP 274
           GIA LP+   + +     L+R++E    P    Y  YP
Sbjct: 239 GIAFLPEEEFESHIEEGRLIRVLEPWCQPFPGYYLYYP 276


>gi|254522213|ref|ZP_05134268.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
 gi|219719804|gb|EED38329.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
          Length = 303

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 1/183 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F   A +GS   AA  L +S +++ + I+ LE  +G++L  R  R L L+E G+   
Sbjct: 7   IRSFTRTAETGSIAAAARALGISATAVGQNINRLEAHLGVRLLNRSTRQLALSEAGALYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L   Q  +    ++P+G LRIA++   G+++L   L      YP +Q++L 
Sbjct: 67  AQVRHIEADLARAQAMVTAGDIEPAGPLRIASSSAFGRHVLAPLLPSLQQRYPQLQLELR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +    +  D +IR+   ++   ++ R+L  +     A+P YLK    P    EL 
Sbjct: 127 LSDRAVQHGPEAVDASIRIGAQLE-DGVVARQLARVPFVFCASPAYLKAHGTPQQPSELG 185

Query: 188 KHN 190
            H 
Sbjct: 186 SHR 188


>gi|153829446|ref|ZP_01982113.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148875100|gb|EDL73235.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 287

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 129/279 (46%), Gaps = 33/279 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GS + AA++L++S+S +S+ +  LE E+G+ L  R  R  TLT+ G + 
Sbjct: 6   QMAIFAHVVEAGSVSAAADKLNVSKSVVSQHLKTLENELGMVLMKRTTRRQTLTDVGEQF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+    E+      +   +P G+ RI  +  L  +L+   + E +  YP ++ +L
Sbjct: 66  YLKCKELNSIAESAWDIASDYQTEPQGRFRITASHALMDSLVAPVIAELMTQYPKLKPEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI----------HMHAYAAPHYLKN 176
           I D++ +D+  +  D AIR+  P   SSL Q+++                   +P Y+ N
Sbjct: 126 IADDQHLDLMANDIDMAIRI-GPSHDSSLKQKRIGEFRDVLCGLEERRTKLNESP-YIAN 183

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             +P  I+    H+         +  E   W       I   + SC   NS+ + +    
Sbjct: 184 VWQPKQIE----HHF--------RSAEGQTW-------IYRQQASC-TANSFHTCLALIR 223

Query: 237 LGSGIALLPD-YIVKDNPNLVRIMEDVITPSFTVYFCYP 274
            G+G+ ++PD Y+ +    LV ++ +   P  TVY   P
Sbjct: 224 SGAGVGIVPDFYLSERGSQLVNVVPNYTLPINTVYTLTP 262


>gi|311278082|ref|YP_003940313.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308747277|gb|ADO47029.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 305

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 15/288 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   VA   SF  AA +L +S +++S  ++GLE+ + ++LF R  R + LT  G + 
Sbjct: 8   ELEVILAVAHRQSFRAAARELGMSATAVSNAVAGLESRLKVRLFNRSTRSVALTPAGQRY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    +++    E+      PSG LRI    +    L +  ++ +LL YP +++ +
Sbjct: 68  VERIAPALAEIQRASEEIMAEPDSPSGTLRINAPQESVSLLFEPLIQPYLLRYPQMRLDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +DI  +  D  IRL + +    +       + M   A P Y     +P +  +L
Sbjct: 128 TSESRMVDIVAEGYDAGIRLAESVPQDMIAVPLTGDLKMLIVATPEYFARHGKPQTPDDL 187

Query: 187 DKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H  I    + G L    +E      TV+ P   PRI    +N   +I +  + G G+A
Sbjct: 188 LTHRSIGMRMSHGGLYHWELERHQQKLTVNVP---PRIV---LNEMRAIHRAALSGVGLA 241

Query: 243 LLPDYIVKDNPNLVRIMEDVIT---PSF-TVYFCYPEALKNTGKLKAF 286
            + D  V+++    R +E V+    P+F  +   YP        L+AF
Sbjct: 242 FISDGFVREDLAAGR-LESVMEAWCPAFGGLRLYYPGRRHVPPGLRAF 288


>gi|262372899|ref|ZP_06066178.1| LysR family transcriptional regulator [Acinetobacter junii SH205]
 gi|262312924|gb|EEY94009.1| LysR family transcriptional regulator [Acinetobacter junii SH205]
          Length = 309

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 129/276 (46%), Gaps = 17/276 (6%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE ++ + L +R  R L+LTE 
Sbjct: 3   DQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLEQDMDVTLLHRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+    E  +I + E      G LRIATT +LG   +   L  ++  +  +
Sbjct: 63  GQAFFLSCQEMLAAAERGKIRINELRDDLVGDLRIATTPELGALHVIPALSHWMSAHKAL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I    D++ ID+  +  D AIR+   I    L    L  +     A+P YL N   P+S
Sbjct: 123 AIHFEADHRYIDLIEERIDIAIRMSLKIDDHQLTAVPLARVDQVLVASPSYL-NQAPPIS 181

Query: 183 IQELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVL 237
             E  +H+     +L+P   M+++   +      GE       + L  N+       C  
Sbjct: 182 RPEDLRHH-----ELLPVTLMQNYQHFSFRHGLSGEVVNIDMKTRLSTNNVFVAKSLCQQ 236

Query: 238 GSGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVY 270
           G GIA +L   I K+  N +LV ++ D   P++T++
Sbjct: 237 GHGIARILYMDIQKELVNGSLVEVLPDWNMPAYTLH 272


>gi|260557137|ref|ZP_05829353.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           19606]
 gi|332876297|ref|ZP_08444072.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|260409243|gb|EEX02545.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           19606]
 gi|322509369|gb|ADX04823.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323519393|gb|ADX93774.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735569|gb|EGJ66621.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 298

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 96/184 (52%), Gaps = 1/184 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F V      F+ AA++L+L +S+IS++++ LE ++G+ L +R +R   L+E G   ++ 
Sbjct: 12  LFVVAVEHQGFSAAAKRLNLPKSTISKRVAILEKKLGLTLIHRSSRSFVLSEAGKLFYQH 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 +    +  L     +PSG +R++ ++ + Q LL   L E    YP + +Q+ + 
Sbjct: 72  AKNAVDEFRYAEENLLIQQQEPSGVVRLSASVPIAQYLLSDCLPELAERYPKLLLQVEVT 131

Query: 130 NKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D+  +  D  IR   +P+  S LIQR L    + A AAP YL       + ++L K
Sbjct: 132 DRYVDVMSENFDIVIRSHFQPLPDSGLIQRVLKNDKIIAVAAPAYLMKSSPIHTPEDLLK 191

Query: 189 HNLI 192
           H  I
Sbjct: 192 HEGI 195


>gi|159045020|ref|YP_001533814.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912780|gb|ABV94213.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 322

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 124/290 (42%), Gaps = 8/290 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V  +GS   AA  L    S ISR+++ LE  +  KL  R       T QG   +  
Sbjct: 29  AFLKVVETGSVRAAARALGQDPSGISRRVAQLEARLNAKLVRRSGNATRPTAQGRAYYAR 88

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LE  + E+   +  PSG LR+   ID GQ  L   L EF   +P ++  L+L 
Sbjct: 89  LRAIIDQLEALEAEIGGETDTPSGLLRVTAAIDFGQEFLAPWLLEFRARHPAVEFDLVLA 148

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+  +  D AIR  K +  SSLI  KL  +     A+  Y++    P +  +L  H
Sbjct: 149 SGFVDMGANEIDVAIRAGK-LPDSSLIATKLAELPRVLVASRAYVEAHGAPRTPSDLLAH 207

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPDYI 248
             I F   +P        L + +  + E R S  + +N+  S +     G+GI   P + 
Sbjct: 208 PAIFF---VPGNRNAPLKLRSPEGQVVEVRRSNGIAINAVRSAVAAVRAGAGIHSGPRWA 264

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             D      +V I+ D    +F +Y     A+    ++  F  F+  K R
Sbjct: 265 FSDLIAAGEVVEILPDYTQDAFPLYAVRQPAIVVPARISRFIPFLREKVR 314


>gi|71278689|ref|YP_270603.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144429|gb|AAZ24902.1| transcription regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 303

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 136/290 (46%), Gaps = 11/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F    +S +F  AAEQL+++Q+++S+QI  LE  +  KLF R  R   LTE+G  L 
Sbjct: 10  LQFFLAAGQSKNFKQAAEQLNVTQAAVSQQIRSLEENLQSKLFERTNRHTMLTEKGRTLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 + +L ++ I+       P   LRI+T        L   L+EF  L+P+I +QL 
Sbjct: 70  PFIQRAFEEL-SSGIQSITGDQNPQ-VLRISTVHSFSSLWLIPRLQEFQKLHPEIMVQLA 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ ID    + D AIR+ +    S L+Q+K+   ++   A+P  L    + +  Q   
Sbjct: 128 PSSELIDFKQSHIDLAIRMGRG-GHSELVQKKVYDDNLTFVASPELLTGINKDIPEQVF- 185

Query: 188 KHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
              L    D      E F ++  +V+    E  +  ++ N  L ++   V G G  L+  
Sbjct: 186 --RLPWIEDTSIGIQERFQDYCKSVNIKF-ETLVPVIKTNDALPLIDSAVQGRGFLLVNT 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V ++     LV+++       +++Y   PE   +  K+K F ++I  K
Sbjct: 243 SLVIEHLRTGRLVKLLNYSSKSPYSLYLVAPEQQFSWNKVKLFEDWIVPK 292


>gi|121604268|ref|YP_981597.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593237|gb|ABM36676.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 304

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 1/189 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +GSF+ AA QL ++ S++SRQ++ LE  + ++L  R  R L LTE G+  +
Sbjct: 13  MAVFARVVDAGSFSAAARQLGITPSAVSRQVARLEGALRVRLLERTTRKLRLTEAGTAAY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +              +    G +RI+     G+ ++   +  FL  YP++ +QL+
Sbjct: 73  TGCQAMVAAAREVLALSDTQTATARGLVRISMPKAFGRLVVHPLMASFLQQYPEVDVQLV 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D AIR+        L  R L+ I   A A+P YL     P   ++L 
Sbjct: 133 ITDRTVDLFEESIDLAIRITD-APPPGLAGRPLMRIRHLACASPQYLAAHGTPGHPRDLA 191

Query: 188 KHNLITFGD 196
           +H+ +  G+
Sbjct: 192 RHSCLYLGE 200


>gi|307309080|ref|ZP_07588757.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307320939|ref|ZP_07600347.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306893423|gb|EFN24201.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306900394|gb|EFN31009.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 299

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 31/302 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + VF  VA  G+F  AA++L +++S++S+ I  LE   GI L  R  R + LT
Sbjct: 1   MTIDLNLVPVFLAVAEEGNFRAAADRLGVTRSAVSQGIRRLEDICGIALVSRTTRSVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLY 119
           E G++LH   S+   ++ +   E      +PSG LRIA T  + +  L G L   F   +
Sbjct: 61  EAGNRLHETLSQPMAEVRSA-FENVAGDARPSGLLRIAVT-SIAEQFLSGPLIASFAETH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHY 173
           P I I + + +   DI     D  +RL        +I++ +V + +         A P Y
Sbjct: 119 PGITIDVTVTDDVFDIVAAGFDAGVRL------GEVIEQDMVAVPLTKEEREVVVATPRY 172

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIG---EPRISCLQVNSYL 229
            +    P   +EL +H  +  G         + W    D  P     EP+I+    N   
Sbjct: 173 FELHGTPRHPRELVRHRCV--GWRPSPSAAPYRWEFEEDGIPFDVAVEPQITT---NDLH 227

Query: 230 SIMQYCVLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            +++  + G GI          YIV+    L+  ++D + P    +  +P       KL+
Sbjct: 228 LMVRTALAGGGITFALEETFRPYIVRG--ELITALDDYLPPFPGFFLYFPNRRNMAPKLR 285

Query: 285 AF 286
           A 
Sbjct: 286 AL 287


>gi|170692188|ref|ZP_02883351.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142618|gb|EDT10783.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 302

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 119/271 (43%), Gaps = 30/271 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   LR F  VA  G FT AA +LH+ Q  +S+QI  LE E+G  LF R  RG+ LT  
Sbjct: 1   MELRHLRYFLAVAEEGQFTRAAARLHIRQPPLSQQIQELEQELGFALFVRQPRGVALTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLG-QNLLQGNLKEFLLLYPD 121
           G         V  +L+   I+ +  +    G +R+A T       L    ++ F  LYP+
Sbjct: 61  GETFAARARSVLLELDNAVIQARRVAQGHIGTVRVALTSSAAFHPLTPTAIRNFRELYPE 120

Query: 122 IQIQLILDNKDIDISM---DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYLKN 176
           + I +   N    I M   D AD AI LRKP+ + + ++ +L+         P  H L +
Sbjct: 121 VAIDMTEVNAADIIEMMVDDRADAAI-LRKPVHTPAGLRFELLAEERMLLVLPVGHRLIS 179

Query: 177 CREPLSIQELDKHNLI---------TFGDLIPKCM-EDFNWLATVDRPIGEPRISCLQVN 226
            R  +++Q+L   + I          + D I  C  + F           EP +   +V 
Sbjct: 180 SRA-IALQKLANESFIFVRRHGAPGMYADFISACQSKGF-----------EPHV-VEEVP 226

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKDNPNLVR 257
             ++ +     G GI+L+P  + + +   VR
Sbjct: 227 RMVTAINLVAAGGGISLVPASMHRYHQESVR 257


>gi|107027809|ref|YP_625320.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693481|ref|YP_839014.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897183|gb|ABF80347.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651481|gb|ABK12121.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 297

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 122/293 (41%), Gaps = 23/293 (7%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR    F  V   G+FT AA +L +S   + + +  LE  +  +L  R  R   LT+ 
Sbjct: 2   DRLRAMETFVAVVEGGNFTEAARRLEISAVMVGKYVRELEERLAARLLERTTRRQNLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         +   +  ++     PSG LRI+  I  G  ++      F   YP +
Sbjct: 62  GRVFYEDAKRALEHMRIAETSVERLRASPSGTLRISAPITFGACVIAPLAATFRQRYPLV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+++D+  +  D AIR+ + +  + L+ R L    M   A+P YL     P +
Sbjct: 122 RVELELSNRNVDLIDEGFDLAIRIGE-LGDADLVARPLTRYRMVICASPGYLAQYGRPQT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCV 236
            Q+L  H+          C+    W +     +G+         S    N    +    +
Sbjct: 181 PQDLSAHH----------CLFHTVWSSRNGWKLGDDDSTHFSAESGFTCNDGNGLRMAAI 230

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+G+ L P+ +V  +     LV++++        V+  Y +  +   KL  F
Sbjct: 231 AGAGLLLQPEVLVSHDLASGALVQVLQGYEPKPHPVHIVYRQDRRPLPKLTRF 283


>gi|293396130|ref|ZP_06640410.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291421263|gb|EFE94512.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 289

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 93/185 (50%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  SG+F+ AA++L +S   + + I+ LET +  +L  R+ R   LTE G   +
Sbjct: 1   MEVFIAVVESGNFSEAAKRLDISSVMVGKMIAQLETLLDTRLLQRNTRRQHLTEAGKTWY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + +  V   L + +  ++     P+G LRI+    LG  ++     EF L YP++ I+L 
Sbjct: 61  QDSLGVMAALRSAEGRIESLRQFPAGSLRISAPTTLGSCVVASLCSEFQLRYPEVYIELE 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  D AIR+ +    S  + ++L    M   A+  YL +   P S+ +L 
Sbjct: 121 LSDRFVDPIAEGFDFAIRVGQLPDDSPFVAQRLGDYKMVIAASADYLSSHPAPQSMADLP 180

Query: 188 KHNLI 192
            H  +
Sbjct: 181 AHRCL 185


>gi|170700887|ref|ZP_02891874.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134205|gb|EDT02546.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 293

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 21/250 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +R F  V R GS + AA  L +  S+++R+I  LE+ +GI+LF R  RG   T++G 
Sbjct: 6   WDDIRYFLAVMRGGSLSAAARALQVQHSTVARRIDALESALGIRLFDRLPRGWPPTDEGL 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            L    ++   +LE        ++       G +R++ +     + L   L      +P 
Sbjct: 66  HL----ADHAARLEADAHAFARAAQGAAALDGVVRVSASPVFASHFLAPRLARAQRAWPA 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L+ +    ++    AD A+RL +P +   L  R+L T+     A+P +        
Sbjct: 122 LRIDLMGEMHAANLYAREADLAVRLSRPSE-PGLAARRLGTMRFALCASPEW-------- 172

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +    D    + + D + +  +   WL          R      N   +  + C  G+G+
Sbjct: 173 ADAPSDTWPFVGYDDALAQTPQQ-QWLER----FAAGRRFAFVANDLAAQHRACAAGAGV 227

Query: 242 ALLPDYIVKD 251
           ALLP ++V D
Sbjct: 228 ALLPRFLVDD 237


>gi|38707948|ref|NP_945089.1| gp58 [Burkholderia phage phi1026b]
 gi|38505440|gb|AAR23209.1| gp58 [Burkholderia phage phi1026b]
          Length = 297

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L  F   AR G+FT AAE+L+++Q ++S+Q+  LET +G  LF R A+ L LT  G +  
Sbjct: 12  LVFFDAAARHGNFTRAAEELNVAQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV + +   +E T + ++E +      L IA         L   + EF   +P++ +++
Sbjct: 72  DRVHAILADCVEATALVMKEQTPH---SLTIACASGTATLFLADRIAEFSAEHPEVSVRI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++     +++    D  +   + +    +    +V   +HAY AP +L   R P   Q+L
Sbjct: 129 LVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIVAEDVHAYCAPTFLAGRRVP--PQDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L+   +   + M   +W       IG      +  NSY  ++Q  + G G  L   
Sbjct: 187 MEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILGWK 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +++    ++  LV   +   +        +P   ++T  +  FR ++ 
Sbjct: 247 HMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLL 294


>gi|78067489|ref|YP_370258.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968234|gb|ABB09614.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 310

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 6/187 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE  V  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAAVATRLFDRSTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQ       G++R++ T D G+  L   L EF   YPD+   L 
Sbjct: 67  NGCRQALQALDDANALLQAGRNVVGGRVRLSATSDFGRRRLLDWLDEFTARYPDVTFSLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +++  D  D AIR   P    +LI R+L        AAP +++    P      D
Sbjct: 127 ASDSTVNLWQDEIDLAIRFAAP-PDGALIARRLAADRRVPCAAPSFIERHGVP-----ND 180

Query: 188 KHNLITF 194
            H+L  F
Sbjct: 181 PHDLARF 187


>gi|124266432|ref|YP_001020436.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124259207|gb|ABM94201.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 309

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 4/239 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  VARSGSF+ AA QL L+ +++S  I  +E  +  +L  R  R L LT +G +
Sbjct: 4   DDLNLFIQVARSGSFSAAARQLALTPAAVSATIKRIEASLQRRLIERSTRALRLTPEGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +       L+       G++++A   D    LL   L  +L  +P +++ 
Sbjct: 64  FLATCEAMVTQWAEGTAGLRAEPGTVEGEVQLAAPADTTYQLLSPWLAPWLTAHPGVRLS 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++  D+  +  D A+R    +  S L+ R L +    A A+P YL+    P +  +
Sbjct: 124 LHVSDRLHDVRREAVDIAVRY-GALPDSGLVARPLCSGPRIAVASPAYLRRRGTPQTPAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIA 242
           L  H+ + +  L  +   D+  W     R  GEP R+            Q+ + G GIA
Sbjct: 183 LAGHDCLLW-MLGGRANRDWRFWRGRSVRGEGEPVRVGGALCGDGSLARQWALQGRGIA 240


>gi|296101094|ref|YP_003611240.1| Transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055553|gb|ADF60291.1| Transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 300

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 13/275 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   V R GSF  AA++L +S +++S  I+GLE+ +  +LF R  R + LT+ G + 
Sbjct: 8   ELEVVMAVVRRGSFRGAAQELGMSATAVSNAIAGLESRLETRLFNRTTRSVALTDAGQRY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    ++     E+   + +P+G LR+    ++G   L   L +F++ YP ++++ 
Sbjct: 68  VARIGPALQEIRQAGEEIHSDTGEPAGTLRLNVPNNIGSLFLDQLLIDFMIRYPKMRVET 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + + + IDI  +  D  IRL + +    +       I     A P Y      P + ++L
Sbjct: 128 VSEARMIDIVAEGYDAGIRLEEAVPQDMIAVPLTGEIRQLVTATPDYFARHGVPQTPEDL 187

Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H  I      G +    +        +  P   PR +    +   + ++    G GI 
Sbjct: 188 LLHQGIGMRMAHGGIYRWELARRGVQYALAVP---PRFAT---SDLFASIRAVKAGLGIG 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            LP+  ++D   +  L+ ++ D   P   +   YP
Sbjct: 242 FLPELYIRDELKSGELLSVLNDWTQPFAGLRLYYP 276


>gi|256061172|ref|ZP_05451325.1| LysR family transcriptional regulator [Brucella neotomae 5K33]
 gi|261325176|ref|ZP_05964373.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261301156|gb|EEY04653.1| transcriptional regulator [Brucella neotomae 5K33]
          Length = 310

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 128/300 (42%), Gaps = 24/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VAR  SF+ AA++L L+Q ++SRQ++ LE ++G  LF R +R + L+E G  
Sbjct: 13  SALAAFDAVARHESFSAAADELSLTQGAVSRQVASLEEQLGAALFDRTSRNVVLSEAGRV 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        +      LQ  S      L +A     G   L   +  F+  YP I + 
Sbjct: 73  YLQAIGPALASIRAA--SLQVMSQMRGTTLNLAFLPTFGTRWLIPRIPRFVAQYPHIILN 130

Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKN--CRE 179
                   D   +  D AI + +P     + + L+   +  +      +P +LK+     
Sbjct: 131 FATRIGQFDFDREGLDAAIHIGQPDWPNAECTFLMDETVAPV-----CSPAFLKDHPVTS 185

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  +  L   N+ +     P   E  +W  ++   I  P    ++   + ++ Q CV G 
Sbjct: 186 PHDLLRLPLFNMAS----RPGAWE--HWSRSLG--ITTPVPGGMRFEQFSNVSQACVAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L+P ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 238 GMGLMPLFLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEVRN 297


>gi|152970697|ref|YP_001335806.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955546|gb|ABR77576.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 303

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 119/278 (42%), Gaps = 23/278 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  W+  R F  V + GS + A+  L+++Q +  R I+GLE  +G  LF R   GL  T+
Sbjct: 4   SIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLLATD 63

Query: 62  QGSKLHRVTSEVY----HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             +   RV +E        LE T         +  G +R+A +  +G  +L   +     
Sbjct: 64  A-ALALRVHAEAMDNTARALERTAANFSRDRAELRGVVRVAASEVVGAEVLPPLVARLRQ 122

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P+I I+L+L N+  D+    AD A+R+  P Q   LI R+L  I +  +A   YL   
Sbjct: 123 ACPNIVIELMLSNRFQDLLHREADIAVRMVAP-QQEQLIARRLGRIELGLHATAAYLTRQ 181

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P ++ +L  H LI F    P             R         ++ +S L+ +     
Sbjct: 182 GLPATLDDLASHALIGFDSATPLVRRALQAYPRFQR-----EAFAMRTDSDLAQLSLIRA 236

Query: 238 GSGIAL----LPDYIVKDNPNLVRIMEDVITPSFTVYF 271
           G+GI +    L D I+         ++ V+   F++Y 
Sbjct: 237 GAGIGICQAPLADGIIP--------LQRVLAADFSLYL 266


>gi|83643788|ref|YP_432223.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83631831|gb|ABC27798.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 313

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 36/295 (12%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLTEQGSKL--HRV 69
            V R+ SFT AAE++H+SQ+++S QI  LE ++G+ L  R +   + LT  G  L    +
Sbjct: 16  AVYRARSFTRAAEEMHVSQAAVSYQIRQLEQKIGVCLVVRQSGSRIHLTHAGQNLVDEYL 75

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            SE   +L+ T   L   S+  SG+L+I   ID G  ++   + E   L P +QI+L + 
Sbjct: 76  ISE--QRLQATLDSLAGESL--SGRLKITAPIDFGSLVMPAAIAELEHLAPALQIELHVS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID+     D AI  R P   ++L    L T      A   YL+    P ++ +L  H
Sbjct: 132 DDLIDLIAQQFDVAI--RSPATGAALTHHLLTTSKKQVVAGKEYLQRRGLPETLADLKHH 189

Query: 190 NLIT--------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            L+T        +G L  +   D +  A  +R         +++ +  ++ +      G+
Sbjct: 190 RLLTRANGKAASWGQLFRQ--NDLSLDAMPER---------MRLGNTFALAEGVRNNLGV 238

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTV------YFCYPEALKNTGKLKAFRNFI 290
           A+LP + V  +    +++E  + PSF+       Y  YP +     +L A    I
Sbjct: 239 AILPSFAVGKDIAEGKVIE--LFPSFSAPLLTEFYLSYPPSAPIRKRLAALAQAI 291


>gi|89075442|ref|ZP_01161859.1| putative transcriptional regulator, LysR family protein
           [Photobacterium sp. SKA34]
 gi|89048858|gb|EAR54428.1| putative transcriptional regulator, LysR family protein
           [Photobacterium sp. SKA34]
          Length = 306

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 132/299 (44%), Gaps = 23/299 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQG 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  +     ++ E   K  G L I+         L   L +F   +PDI ++
Sbjct: 69  YFLDIKDIFSAISDATDKVLERGAK--GALTISLPPSFAIQWLVPRLTDFNEQHPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   + D     D  D AI   +    S L   KL    M    +P  L   +   ++ +
Sbjct: 127 IKAVDLDEGSLTDDVDVAIYYGRG-NWSGLRADKLYQEFMMPVCSPMLLTGTKPLRTLDD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS------YLSIMQYCVLGS 239
           L  H L+   D   K  E  N++   D       +  + VN          ++Q    G 
Sbjct: 186 LKLHTLLH--DTSRK--EWKNYVRHYD-------LQGVNVNQGPIFSHSTMVLQAAAHGQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIAL  + + +   +   LV   ++V+      YF   E   +TG+++ FR+++  KAR
Sbjct: 235 GIALGNNVLAQPELEAGRLVCPFDEVLVSKNAFYFVCQERQADTGRIQIFRDWVLAKAR 293


>gi|307245554|ref|ZP_07527641.1| hypothetical protein appser1_7580 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254509|ref|ZP_07536345.1| hypothetical protein appser9_7570 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258967|ref|ZP_07540698.1| hypothetical protein appser11_7640 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853613|gb|EFM85831.1| hypothetical protein appser1_7580 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862559|gb|EFM94517.1| hypothetical protein appser9_7570 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866991|gb|EFM98848.1| hypothetical protein appser11_7640 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 298

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 133/288 (46%), Gaps = 10/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE G  
Sbjct: 5   NAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTEAGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+IQ+ 
Sbjct: 65  YYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPNIQLN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P ++ +
Sbjct: 125 IEFSDRRVDVVAEGYDLVLRI-GALEDSSIVAKRIARSELVLLASPEYLAKHGTPENLAQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + + +       D +    +     +P    +  N Y +++Q    G GI  LP
Sbjct: 184 LAEHTCLIYENHQQWQFTDGDQKVKI-----KPNAHVISNNGY-ALLQMTKAGQGIVNLP 237

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ K+      LV I+      S  +   YP     + K+K    F+
Sbjct: 238 LFLAKEEISAGKLVEILPQYKQHSIDISILYPHRRYLSPKVKVLIEFL 285


>gi|260775737|ref|ZP_05884633.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608153|gb|EEX34322.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 294

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 128/288 (44%), Gaps = 15/288 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  V    SFT AA  L L +S+++  +   ET +G++L  R  R ++ T  G  
Sbjct: 5   DAMRVFTRVLERRSFTLAATDLGLPRSTVTDAVKKWETRLGVRLLERTTRHVSPTLDGDN 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   ++  +   Q+ +  P G LR+       ++ +   L  FL  YP I + 
Sbjct: 65  FYARCVQILRDIDDAESAFQDEN--PKGALRVDAHGSFSRHFILPRLGAFLQRYPGINLF 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D   +  DC +R+   +Q   ++ R++  +     A+P YL     P S+  
Sbjct: 123 LSEADRRVDPLREGIDCVVRIGH-LQQDDVVARQIGLLEEVTVASPAYLAKLGTPRSLNA 181

Query: 186 LDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           L  H ++ +   G  +   +E       V+R +    ++  L VNS  S+++      GI
Sbjct: 182 LKDHQMVGYCASGQSVAMPLE-----FQVNRKVTTQHLAASLWVNSAESLVEAAKRDLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +P Y V +      LV ++E        V+  +P   + + +++ F
Sbjct: 237 IQVPRYHVANALSQGELVALLEAYPPEPSPVWVLFPPHRQASSRVRVF 284


>gi|167033714|ref|YP_001668945.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860202|gb|ABY98609.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 313

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 11/148 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W  L VF   AR  SFT  AE+LH++  ++S+Q+  LE  +G +LF R ARG+ L+ +
Sbjct: 10  FVW--LHVFACAARHLSFTRCAEELHITPGAVSQQMRQLEERLGYRLFLRRARGVELSAE 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +  +E Y  +E   + L    ++  G LR+ +        L   L  F   YPDI
Sbjct: 68  GQRLAQTVAEAYGSIEAELLRLDAGEIR--GTLRVRSIPSFLAKWLTPRLPRFQQRYPDI 125

Query: 123 QIQLILDNK-------DIDISMDYADCA 143
           +++L+ ++        D D+++D  D +
Sbjct: 126 ELRLVAEDSAQALTPGDFDLAIDLNDGS 153


>gi|126444842|ref|YP_001061330.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126224333|gb|ABN87838.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 320

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 16  NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 75

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 76  NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 131

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 132 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAV 190

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L   + I  G L       ++      R +       L+V S L   Q  + G+
Sbjct: 191 PRHPDDLPGSHWIGHGGL---ANLSYSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGA 247

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 248 GISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 300


>gi|315123415|ref|YP_004065421.1| predicted DNA-binding transcriptional regulator [Pseudoalteromonas
           sp. SM9913]
 gi|315017175|gb|ADT70512.1| predicted DNA-binding transcriptional regulator [Pseudoalteromonas
           sp. SM9913]
          Length = 299

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 137/296 (46%), Gaps = 25/296 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  +   GSF+ AA  L L+ + +SR +S LE+ +   L  R  R L LTE+G  
Sbjct: 12  EDLEMFITIVDCGSFSGAASLLDLNVAKVSRALSRLESRLNCTLLNRTTRRLELTEEG-- 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVK-----PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
              +  E   K   T + L E ++K     PSG LRI        + L   + EF   YP
Sbjct: 70  --HIYIEYARKALNTLL-LGEETIKLLKQAPSGHLRIDAASPFVLHQLAPLVNEFKKQYP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + +   +  ID+     D AIR+   ++ S+L  RKL    +   A+  YLKN    
Sbjct: 127 QITLDITSHDNIIDLLERKTDLAIRI-GDLKDSNLHARKLGQSKLKLVASTDYLKNAPPL 185

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L  HNLI F +  P  +    W    ++ +       L+ +S  +I   C+   G
Sbjct: 186 QQVSDLKNHNLIGFSE--PNTLN--QWPLKHEQSLHFD----LRASSGETIRHLCIADQG 237

Query: 241 IALLPDYIVKDNPNLVRIME----DVITPSF--TVYFCYPEALKNTGKLKAFRNFI 290
           IALL  +++ ++    R++E     V +P+   ++Y  Y +    + ++ AF +FI
Sbjct: 238 IALLSQFMIAEDLAKKRLIEVLPHSVSSPNNRESIYGVYYKNEAVSSRIVAFLDFI 293


>gi|83648182|ref|YP_436617.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83636225|gb|ABC32192.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 296

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 119/286 (41%), Gaps = 17/286 (5%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL----HR 68
            +A   SFT AA  + +SQS+IS+ I  +ET++G  L  R  R +  T QG +L     +
Sbjct: 14  AIAEQQSFTAAASAMGVSQSAISQSIKRMETQLGFPLLERTTRRMRFTPQGERLLLGVRK 73

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+   L+    E +E      G LR+ T    G   L   L EF  L+P I++ L  
Sbjct: 74  ALGEIKGALDQIHSEREE------GVLRVETFATFGMYWLLPRLPEFHKLHPGIRVYLNT 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +          AD  +R       S    + L T  +    +P   +   +    Q L +
Sbjct: 128 EESIRPAGSSDADVMLRFAS-APPSGFYSQALGTEQIFPVCSPLLFQQYPDLSGAQMLQQ 186

Query: 189 HNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             L+ T  D    CM+  +W     R         +  +    ++Q    G G+AL   Y
Sbjct: 187 ATLLATANDGSDNCMK--SWEQWSQRAGVNVSKDIIYFSRTELVLQAAQAGQGVALGRTY 244

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IV D   N +L+ +  D I   FT YF  P    +  K+K FR+++
Sbjct: 245 IVADAIANGSLIALDADPIPAPFTYYFATPYERADWPKVKKFRDWL 290


>gi|78063189|ref|YP_373097.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971074|gb|ABB12453.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 306

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 91/187 (48%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + V  +L++ + E Q  + +P G LR+        N L   +  F   +P +++ 
Sbjct: 65  IYERCAAVLDELDSLEAEAQAPTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPKVRLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + ID+  +  D  I +   + + S + R +  I +   A P YL+    P+   +
Sbjct: 125 VTLTERPIDLVGEGYDIGIVVPYMLTNESTVVRLVERIPLVIVATPTYLRAHSRPVMPAD 184

Query: 186 LDKHNLI 192
           L  H  +
Sbjct: 185 LADHPFV 191


>gi|229133268|ref|ZP_04262098.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-ST196]
 gi|228650179|gb|EEL06184.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-ST196]
          Length = 305

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 139/293 (47%), Gaps = 40/293 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   ISIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   + +F   YP
Sbjct: 67  EAGRVLLSHSKTIFHEVEQARSAIQDLNGLHHGSLTIGSLLTVVNYLLPPAILDFNKQYP 126

Query: 121 DIQIQLI----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I++ ++          L   ++DI + +         P+Q   ++   L    +     
Sbjct: 127 NIELSVLGLRTGEIREKLLQNELDIGITFL--------PVQDKEIVSIPLYKSELTLVVP 178

Query: 171 PHYLKNCREPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQ 224
             +    R+ +SI+EL  + LI         +LI    ++FN+     +PI       L+
Sbjct: 179 TSHSLTERKYVSIEELQDYPLILLPKNFYLTELITSHCQNFNFKP---KPI-------LE 228

Query: 225 VNSYLSIMQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +++  S++Q    G GI +LP    D++  ++   ++I     TP+  +   Y
Sbjct: 229 ISTMESLIQMVAQGMGITVLPKPYIDFLQNEHIQAIKIENP--TPTIDIGLIY 279


>gi|254524783|ref|ZP_05136838.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219722374|gb|EED40899.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 299

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 21/294 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F   A + SF        +S S+  + ++ LE  +G++LF+R  R +TLT +G   
Sbjct: 9   NLQTFVHAADTRSFVETGRLQGISASAAGKCVARLEHALGVRLFHRSTRSITLTAEGQLF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  + +  + EL +    P G LRI   + L  +L    + EF+  YPDI++ L
Sbjct: 69  LARCRRILDERDAARTELAQPHATPRGTLRIG--LPLVGDLTLPLMAEFMAAYPDIRLDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  D  +R+ +P   S +  R+L        A+P YL+    P +  EL
Sbjct: 127 DFSDRLVDVIEEGFDAVLRVGEP-SDSRMNARRLGVFPRRIVASPGYLQQRGIPRTPAEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-------VNSYLSIMQYCVLGS 239
            +H L+ +    P   +   W      PI  P     Q        N+  + +   +   
Sbjct: 186 MQHTLLHY--RFPSTGKLELW------PIHWPEDETPQELPVHMVANTIEARVALALRHV 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A +P + V+D   +  LV ++++ +      +  +P       KL+ F +F+
Sbjct: 238 GVAFVPVHSVRDALADGRLVTVLDEHVHSCGIFHLLWPSGRHVLPKLRVFIDFV 291


>gi|218658537|ref|ZP_03514467.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 238

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 96/185 (51%), Gaps = 10/185 (5%)

Query: 19  SFTHAAEQ---------LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F HAAEQ           +S S+I + ++ LE+ + ++LF R  R ++LTE+G+ L+  
Sbjct: 11  AFVHAAEQRSYVAAARLAGVSPSAIGKAVARLESRLRVRLFNRTTRSISLTEEGAVLYEH 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V   ++  +  + +   +P G+LR++    +G +LL   L  F   +P+I++ +  +
Sbjct: 71  YKRVLDDMQDAEAAVSKGRDRPRGRLRVSVPHIVGHHLLMPILPSFTAQFPEIELDIDFE 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ ID+  +  D  +R  + +  + LI R+L   H    A+P YL+    P +  +L +H
Sbjct: 131 DRVIDLITEGLDVVVRSGE-LADARLIARRLGEQHFVVCASPAYLELHERPDTPDDLSRH 189

Query: 190 NLITF 194
             I F
Sbjct: 190 ACIHF 194


>gi|325923063|ref|ZP_08184758.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325546455|gb|EGD17614.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 307

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 133/285 (46%), Gaps = 17/285 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F     +GSF+ A   L L Q ++SR ++ LE  +  +L  R  R L LT +G + +   
Sbjct: 16  FARAVETGSFSAAGRDLGLGQPNVSRHVAALEEHLHTRLLNRSTRKLVLTPEGERYYAEV 75

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   +  +++ L++ +V+PSG LR+A    L    +   + EFL  +P +++ L +++
Sbjct: 76  RRILDAVGESEMSLRD-NVQPSGLLRVACPTALSHQYVMPLVPEFLRRFPGLELDLQIND 134

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +++  + A+ AIR+   +++S+L  R++ +      A+  YL     P    +L +H+
Sbjct: 135 RFVNLLDEGAELAIRIGH-LENSALRARRIGSFKRVCVASKDYLAERGIPTVPDDLRQHD 193

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + +  L       F     VD P+       ++VNS  +  +    G GI   P+++ +
Sbjct: 194 CVLYTLLASGASWRFK---EVDVPV----TGRIRVNSPEAAREAVSAGLGIGQGPEWLFE 246

Query: 251 DNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              N   L  ++     P+  ++  Y        +L A R  +F+
Sbjct: 247 QGLNTGHLQIVLNAFAGPAVPMHIMYA-----ANRLVAKRAIVFM 286


>gi|221195947|ref|ZP_03568994.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221202620|ref|ZP_03575639.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176554|gb|EEE08982.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221182501|gb|EEE14901.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 299

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 115/283 (40%), Gaps = 6/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W++ R F  V   GS + AA  L ++Q +  R I+ LE   G  LF R   GL  T+ 
Sbjct: 5   LNWERYRTFLAVLTEGSLSAAARALGITQPTAGRHIAALEAAFGQTLFTRSPSGLLPTDA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              L      +       +           G +RI+ +  +   +L   L +    +P +
Sbjct: 65  ALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPMLAQLRREHPGL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+  ++  D+    AD A+R+  P Q  +L+ R++  + +  YA   YL     P +
Sbjct: 125 VIELVPTDRIQDVLNREADIAVRMASPSQ-DALVARRIGELEVALYARDDYLARYGAPST 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L  H LI F  + P        L +  R         L+ +S L+ +     G GI 
Sbjct: 184 LDALAHHALIGFDTVTPFVRSAGRGLPSWTR-----EAFALRTDSNLAQLAMIRAGYGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
                + + +  LVR++ D        +    E L+ + + +A
Sbjct: 239 FCQSRLAQRDARLVRVLPDGPAVKLETWVVMHEDLRASPRCRA 281


>gi|254437719|ref|ZP_05051213.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198253165|gb|EDY77479.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 302

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 34/300 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR    + R+G+   AA  L +  +S++R++   E  +G +LF  H R   LT  
Sbjct: 7   MNWDDLRYVLALGRAGTLVGAAASLGVHYTSVARRVKQFEDSLGTQLFDHHPREQVLTAA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L RV   +  ++     +L     + SG+LRIAT   +     + +L EF   +P +
Sbjct: 67  GEELMRVAERMEIEVIALDRKLLGKDARLSGQLRIATVDTIAMAHCK-DLAEFADRHPAV 125

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++  +    ++S   AD AIR  +KP +   L+ R++  +    +A P          
Sbjct: 126 ELEIAAELNLHNLSKREADVAIRATKKPPE--HLVGRQVAIMRFAPFAMPEL-------- 175

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--------RISCLQVNSYLSIMQ 233
            I+++D    +     +       +W    DRP+  P        R   + V++     +
Sbjct: 176 -IEKIDAGTPMVAWPWV-------HWAQQGDRPMWSPWLEQVAVGRGRVINVDNGAVFTE 227

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV---YFCYPEALKNTGKLKAFRNFI 290
               GS    LP      NP L RI      P   +      +PE L++T +++AF  F+
Sbjct: 228 MVESGSCAGFLPLATAALNPALKRI--GPWRPELDIPLWILTHPE-LRHTARIRAFMEFM 284


>gi|190894416|ref|YP_001984709.1| putative LysR family transcriptional regulator [Rhizobium etli CIAT
           652]
 gi|218516864|ref|ZP_03513704.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
 gi|190700077|gb|ACE94159.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327191902|gb|EGE58888.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 299

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 120/292 (41%), Gaps = 14/292 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  LR F + A   +F   A +L ++ ++++R I+ LE E+G++LF R  R ++LT  G
Sbjct: 3   DYKALRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEAELGVQLFVRTTRQVSLTTDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +            LE  + E+  +     G+LRI+     G+ +L   L  F   YP + 
Sbjct: 63  AIFAAQVQPAVKTLEDARREMMNAHKAEEGRLRISAPTWFGKVVLPPILSGFKEKYPKMS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            ++ L +  ++I  D  D AIR+         I RK+  +     AAP            
Sbjct: 123 FEISLSDGLVNIVDDDYDLAIRISSQPSDKFTIWRKIRVVPRILVAAPGS--------RF 174

Query: 184 QELDKHNLITFGDLIPKCMEDF--NW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++   + +T  D +    E    NW L+     I          NS   +      G+G
Sbjct: 175 VDMSHPHELTPDDCLAYSGESRRENWILSDGGSSIAISAGRAFSANSGEVLADMAADGAG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +ALLP + + +   +  LV +      P   +   YP       ++ +F  F
Sbjct: 235 VALLPGFNIAEHIRSGRLVHVFRGWAPPDLWLTLYYPPYQALPPRIASFSKF 286


>gi|53721202|ref|YP_110187.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|217422839|ref|ZP_03454341.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|52211616|emb|CAH37611.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|217393747|gb|EEC33767.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 320

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 16  NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 75

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 76  NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 131

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 132 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAV 190

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L   + I  G L       ++      R +       L+V S L   Q  + G+
Sbjct: 191 PRHPDDLPGSHWIGHGGL---ANLSYSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGA 247

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 248 GISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 300


>gi|310818723|ref|YP_003951081.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391795|gb|ADO69254.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 307

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 134/303 (44%), Gaps = 23/303 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF      GS   A  +L  S +S++R IS LE  VG++L +R  R L L+E G +
Sbjct: 5   DAMRVFVTALDEGSLAGAGRRLGHSPASVTRAISFLEAHVGVQLLHRTTRSLRLSEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V  +LE   +        P G L +   +  G ++L+  L  FL   P +  +
Sbjct: 65  YAAACRRVLTELEEADMLAAGERAAPLGMLTLTAPLVSGAHILRPILDAFLDTQPAVTAR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQ 184
           L+L ++ +++  +  D A+R+   +  SSL+  +L  +     A+P YL + R PLS  +
Sbjct: 125 LLLLDRPVNLLDEGIDVALRIAH-LPDSSLVAIRLGEVRKVVCASPAYLAS-RPPLSEPR 182

Query: 185 ELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVL 237
           +L  H  I         M  F   +W     +    PR       L VN   + +   V 
Sbjct: 183 DLAAHACI--------AMTQFGQDSWSFPPAQGSHAPRHVRLAPRLLVNGVEAAVASAVE 234

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--L 292
           G G+  +  Y V +      LV ++ +   P   V+   PE   +  K++AF +F    L
Sbjct: 235 GHGVTRVFSYQVAEEVRAGRLVVLLPEAEPPPLPVHLIAPEGRLSVPKVRAFVDFAVPKL 294

Query: 293 KAR 295
           KAR
Sbjct: 295 KAR 297


>gi|301166488|emb|CBW26064.1| putative LysR family transcription regulatory protein
           [Bacteriovorax marinus SJ]
          Length = 304

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 142/293 (48%), Gaps = 17/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA++ S++ AA+++ +S++ +S+ I+ LE E G KLF R  R + L+  G +L 
Sbjct: 17  LSVFEKVAKNQSYSLAAKEMGVSKAYVSKIITSLEEEFGEKLFIRSTRKVKLSYLGEELL 76

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S   + LE+    L   S  P G  +++     G++ +   L +    YPD+++ + 
Sbjct: 77  AKCSSPLNILESISESLANRSPTPKGVFKVSLAGAYGEDYIAPVLFKMAKEYPDLKVDIS 136

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +++D+  +  D AIR+   +  S+L  RK+     +  A   Y+K   EP S +EL 
Sbjct: 137 FSTRNVDLLDENVDVAIRV-GDLADSNLYARKISFRREYICATKKYVKLNGEPKSPKELK 195

Query: 188 KHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
           + N L+  GD          W   + + +   ++S  ++ ++   +++  +   G+  LP
Sbjct: 196 EFNCLMGVGDY---------WSFIIKKKVERIKLSGNIRSDNGRVLLKAALDSIGLVKLP 246

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLK 293
           D  VK   D+  L+ +++  +     ++       K++  L+ F + +  FLK
Sbjct: 247 DVYVKEYIDSGKLLSVLDSYLAKEIPIWAVTHTRKKDSVNLQHFLDLLEEFLK 299


>gi|190575513|ref|YP_001973358.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190013435|emb|CAQ47070.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 297

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 132/288 (45%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+ ++   GS + AA  L +S +   + +  LE  +G++L  R  R   +T  G  
Sbjct: 5   ESMQVYVLIVDKGSLSAAAAALAISPTMAGKHLRALEARLGMQLLSRTTRRQHMTPFGED 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+   +E T  + Q   + P+G LRI+  +  G + L   L +++  YPD+++ 
Sbjct: 65  YYARCREILRLVEETDAQAQYQHLAPAGTLRISAPVIFGTHALVPALADYMARYPDVRVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L ++ +D++ +  + A+R+     SS L+ R L    +   A+P YL     P  +  
Sbjct: 125 AVLTDRVVDLAEEGFEAALRIGTLADSSVLVARALAPYRLMMCASPGYLARHGTPSDLLA 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  ++F    P  +    WL      +G      LQ+N+  ++    + G GI L  
Sbjct: 185 LARHQCLSFE---PSALA--QWLQADAGGLGHVPTGRLQINNGEALRTAALHGLGIVLQS 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++    +   LV++  +       ++  Y      + +L++F +F+
Sbjct: 240 ALLLAADVEAGRLVQLFPEHGHAGRPMHVVYAHDRYPSTRLRSFIDFL 287


>gi|152970289|ref|YP_001335398.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955138|gb|ABR77168.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 301

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 121/275 (44%), Gaps = 7/275 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +R+F  V   GS + AA  L + Q ++S +I  LE  +G +L  R+ R ++LT+ G+
Sbjct: 4   FSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTQSGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +       E   + + E +    GK+RIA     G++LL   L +    +P++Q+
Sbjct: 64  VFYERSKTAVQAAEHA-LSVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPELQV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +I +++ I+   +  D ++RL   +     + R L T+     A+P  L     P +  
Sbjct: 123 DVIFNDRVINPVTEGVDLSLRLGD-VSEGFFVARPLGTVRRVLLASPALLAKMGHPDTPD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  +       +          +A+ D+ I  P     Q   + S++ + + G  I +L
Sbjct: 182 ALTDYPFAAVSGVF--ASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
              + +    +  L+ ++     P F+ +  +P A
Sbjct: 240 QSPVCRKEIADGALIPLLSHYPIPPFSAWLLHPPA 274


>gi|187479619|ref|YP_787644.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115424206|emb|CAJ50759.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 299

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 11/240 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  VAR  S T AA+ LH++QS++SRQI  LE  +G+ L  R  R ++LT +G++
Sbjct: 12  DLVRGFVAVARRMSITQAAQDLHVTQSAVSRQIRSLEAHLGVALLTRGFRSVSLTPEGAQ 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKL--RIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L R+      +L     EL      P  +L   + TTI +    L   L  F   +PDI 
Sbjct: 72  LFRLADPWLTELG----ELSAQWRTPGRRLPVTVTTTIGVASLWLLPRLGAFQAEHPDID 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  DN+ +D+  +  + AIR     +  S     L    +   A P +     +  ++
Sbjct: 128 VRVAADNRIMDLDREGVEIAIRYCT-AEHVSEEAHWLFGETVLPVAHPSFDLPSLDAAAL 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL    L+ F D     ++   WL         P+ S L+ N Y  ++   + G+G+AL
Sbjct: 187 REL---VLLEFDDPTRPWLQWGTWLDARGLSRVRPK-SILRFNQYDQVVHAALAGNGVAL 242


>gi|84515971|ref|ZP_01003332.1| transcriptional regulator, LysR family [Loktanella vestfoldensis
           SKA53]
 gi|84510413|gb|EAQ06869.1| transcriptional regulator, LysR family [Loktanella vestfoldensis
           SKA53]
          Length = 290

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 1/193 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AAE+L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAFQVARRGTVSGAAEELGVHHATVIRHIDALEQRLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +V      +       ++      SG L I T++D+  + L   +  F   YPD++
Sbjct: 63  QDLLQVAQATDDQFTQLAGRIKGQGEGVSGDLVI-TSLDMLSHRLTPVMVAFQAQYPDLR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+    ++   +    A  AIR     +    + +  +   M   A+  Y+     P   
Sbjct: 122 IRYRTGDRVFRLEYGEAHVAIRAGTMPEEPDNVVQPFMAQRMSLVASAAYIDRFGLPDGA 181

Query: 184 QELDKHNLITFGD 196
           ++L +H  +   D
Sbjct: 182 EDLPRHRFVIGDD 194


>gi|330988764|gb|EGH86867.1| fused ISPsy20 transposase IstB/transcriptional regulator LysR
           family protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 315

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 13/273 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLAVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHVRMGCTEGFGSFFITPQLSHFLDSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +     
Sbjct: 131 ISLDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQAYLDSHPAIE 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVLGS 239
              +L  H  I++ D +    E   +L+ +  P  +      Q+ S   I QY   + G 
Sbjct: 190 QKADLSGHVFISYVDDLAFSSE-LLYLSNL-LPNAQA-----QLRSTSVIAQYTAALQGR 242

Query: 240 GIALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
            +A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 243 ALAILPCFLAAQDPRLLPVLAEEVNITRQFWMY 275


>gi|300310408|ref|YP_003774500.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300073193|gb|ADJ62592.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 296

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 133/296 (44%), Gaps = 12/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R+F  VA + SF  AA Q+ LS  +++R ++ LE  VG +L  R  R +  TE G+
Sbjct: 4   WLAMRIFVQVAEAASFAKAARQMQLSAPAVTRTVATLEELVGARLLVRTTRSVKTTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  ++   +        +PSG L +   +  GQ  +   + E+L LYP ++ 
Sbjct: 64  RYLEDCRRILAEIAEAEAAAAGHYDQPSGTLSVTAALLFGQMHVLPIVTEYLDLYPGMRA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +    ++ ++I  +  D A+R+   +  S     ++ ++     AAP YL+    P S  
Sbjct: 124 RTFFIDRPVNIVEEGMDVAVRIGH-LPDSGFTAIQVGSVRRVICAAPDYLRRHGVPTSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H ++T             W  A   R + E   + LQ N+  + +     G G+  
Sbjct: 183 DLKQHRIVTSTS----AWASPEWRFADGQRVLVE---AALQTNTNEAAIATARQGWGLTR 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  Y V  +     L R+M +   P   ++  YPE  ++  K++AF +    + R+
Sbjct: 236 VLAYQVAADLQAGRLQRVMSEFEEPPLPIHVLYPEGRRSPAKVRAFIDLAVCRLRE 291


>gi|222081616|ref|YP_002540980.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726295|gb|ACM29384.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 307

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 135/284 (47%), Gaps = 16/284 (5%)

Query: 19  SFTHAAEQ---------LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F HAAEQ            S S+I + +  LE  +G++LF R  R ++LTE+G+  +  
Sbjct: 9   AFVHAAEQQSYVAAARVTGASPSAIGKAVGRLEARLGVRLFNRTTRSMSLTEEGAVFYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L   +  + +S  +P+G+LR++    +G +L    L+ F+  +P I++ +  +
Sbjct: 69  CKRIIDDLGDAEAAILQSRERPTGRLRVSMPHIVGHHLFMPILRSFVESFPGIELDIDFE 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  + +  S LI R L   H     +P Y++    P +  +L  H
Sbjct: 129 DRVVDLVAEGVDLVVRSGE-LADSGLIARVLGQQHFVICGSPEYVERRGRPQTPADLAGH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I F       +  + + A  DR I  P+   L  N+  + ++  + G G++ LP Y+ 
Sbjct: 188 ACIHFRYPSSGRIALWAFQAPHDRLI-LPK--NLIFNNTDAGLRATLDGLGLSHLPVYVA 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    +  L  ++   + P  ++   +    + + K++AF +F+
Sbjct: 245 EPYIRSGILTPVLTSFMVPFGSLSLVWQSNRQLSPKVRAFVDFM 288


>gi|221229323|gb|ACM10030.1| AmpR [Stenotrophomonas maltophilia]
          Length = 288

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 2/141 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT AA +L +SQ+++S QI GLE  +GI+LF+R  RG+ LT++G+ 
Sbjct: 9   NALRAFEAAARHQNFTRAALELCVSQAALSHQIRGLEDRLGIRLFHRLPRGVALTDEGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+ V +E + ++  +         +    L +  T   G   L   L  F   +PDI+++
Sbjct: 69  LYPVLNESFERISASIARYTGGPAREVLTLGVVGTFATG--WLLPRLAAFEAAHPDIELR 126

Query: 126 LILDNKDIDISMDYADCAIRL 146
           L   N  ID++ +  D AIR 
Sbjct: 127 LQTHNNRIDLAGEGLDLAIRF 147


>gi|124383244|ref|YP_001025021.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|238561886|ref|ZP_00441302.2| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|251766800|ref|ZP_02264996.2| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254356136|ref|ZP_04972413.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|148025119|gb|EDK83288.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|238523716|gb|EEP87153.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243064709|gb|EES46895.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|261827193|gb|ABM98518.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 448

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 24/300 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 144 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 203

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 204 NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 259

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 260 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAV 318

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVL 237
           P    +L   + I  G L       F       R  P G      L+V S L   Q  + 
Sbjct: 319 PRHPDDLPGSHWIGHGGLANLSYSVFGNEGRSVRIQPPGR-----LKVKSVLLAHQMALA 373

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 374 GAGISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 428


>gi|161521671|ref|YP_001585098.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352163|ref|YP_001947790.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345721|gb|ABX18806.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336185|dbj|BAG45254.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 323

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 93/184 (50%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  SGSF  AA ++ +++S++++ ++ LE  +G++L  R  R L LT++G   +   
Sbjct: 11  FVEVVESGSFAAAALRIGVTRSAVAKVVARLERRLGVRLLQRTTRQLNLTDEGHLYYEQC 70

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  T+  L     +PSG+LRI+  +  G+  +   ++  +  +P +++ +   +
Sbjct: 71  RRLLAELGDTEAALDAGRREPSGRLRISVPVLFGRQCVAPVMRRLVERHPRLEVDMSFSD 130

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D+  D  D A+R+     +++L+ R+L    M   A+P YL     P     L  H 
Sbjct: 131 RVADLIDDGFDIAVRIGVLADTTALVARRLGVQRMGICASPAYLDRHGWPSGPDALASHV 190

Query: 191 LITF 194
            I +
Sbjct: 191 GIPY 194


>gi|298717494|ref|YP_003730136.1| transcriptional activator AmpR [Pantoea vagans C9-1]
 gi|298361683|gb|ADI78464.1| transcriptional activator ampR [Pantoea vagans C9-1]
          Length = 289

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 20/293 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT A  +L +SQ+++S+Q+  LE  +G+ LF R +RGL LT++   
Sbjct: 8   NALRAFEASARHLNFTRAGMELFVSQAAVSQQVRLLEERLGVTLFKRLSRGLELTDEARL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    SE +H++E    + +    + +  L    T  LG   L   +++F   +P I++ 
Sbjct: 68  LFSEISEQFHRIEKAYRQFEGGHFREALTLSCVGTFALG--WLLPKIEDFQQQHPAIELS 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +N  + I+ +  D AIR       SS    +L+      + AP  L  CR P + + 
Sbjct: 126 IQTNNNVVSIAGEGVDFAIRYGSGSWVSS--HNQLL------FDAPLTLL-CR-PETAKR 175

Query: 186 LDKHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L K   IT   L+     D   NW A    P    RI+    +S   I+   ++   +AL
Sbjct: 176 LRKPADITGETLLRSYRHDEWDNWFAAAGVP--SFRINGPVFDSSRLIIDAVLITGSVAL 233

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            PD + +       LVR   D+ + +   +  + +A K T  ++ FR +I  K
Sbjct: 234 APDIMFESEIKRGLLVRPF-DIYSGNDGYWLTWQKARKMTPSMQIFREWIIQK 285


>gi|221200455|ref|ZP_03573497.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206135|ref|ZP_03579149.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221174147|gb|EEE06580.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221179796|gb|EEE12201.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 306

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 98/194 (50%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDKLDGVTTFVQVVESGSFALAAERLGMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +P GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALAELEAAEADLDCGRNEPRGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDLIEEGIDLAVRIGPLEDSTSLAVRRLGTQYGSLGAAPSYLARYGMP 180

Query: 181 LSIQELDKHNLITF 194
            S+ +L  H  + +
Sbjct: 181 QSLDDLKNHRTVAY 194


>gi|91788240|ref|YP_549192.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91697465|gb|ABE44294.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 301

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 17/295 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  VA  G F  A   L L +S +SR+++ LE  +G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVAERGGFAAAGRSLGLPKSRLSRRVAELEARLGVRLLQRTTRKLSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R  S +  +       + +  V+P G LRI   + L Q+ L   +  F+ L+P ++
Sbjct: 63  EIYLRHCSAMRDEALAAAEAVAQVQVEPRGTLRITCPVTLAQSTLGYLVPRFMALHPQVK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + + + N+ +D+  +  D A+R+R  ++ S SL+ + L +      A+P  L     P  
Sbjct: 123 VDMRVTNRVVDLVEEGIDIALRVRPTLEDSGSLVVKNLGSSGGELLASPTLLARQGRPEK 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVL-G 238
            ++L K + +    +  +     +W  T+  P G+  +   Q   V   L  ++  VL G
Sbjct: 183 PEDLMKLDTVAMSWVDGRS----SW--TLLGPEGQEFVLQHQPRYVADDLQTLKLAVLAG 236

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +GI+ LP+ +         LV ++          +  +P      G++ A R+F+
Sbjct: 237 TGISFLPNSLSAAEQQAQLLVPVLPGWAPKPGVAHAVFP---SRRGQVPAVRSFL 288


>gi|329847740|ref|ZP_08262768.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
 gi|328842803|gb|EGF92372.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
          Length = 299

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 6/239 (2%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           VA+SGS + AA +L +  +S+SR++S LE  +G ++F R +R L LT+ G         +
Sbjct: 13  VAQSGSLSAAARKLRMPLASLSRKVSELEAHLGAQIFTRTSRKLALTDSGEGYLAAARRI 72

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              +   +  +      PSG+L +   +  G+  +      FL  +PDI ++LIL ++ +
Sbjct: 73  LDDISEAERTIAGEFRTPSGELVVTAPVVFGRMHVLPVATAFLKSHPDIDLRLILTDQPL 132

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           +++ ++ D A+R+  P+  S +  R + +      A+P YL     P +  +L  H+ IT
Sbjct: 133 NLAEEHVDVALRI-GPLPDSQMRARLVGSTRRIICASPAYLAVRGPPKTPADLATHDGIT 191

Query: 194 FGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
              L       F +    V  P+  PR+   +VNS  + +   + G G+  +  Y V +
Sbjct: 192 LDSLASAAGWQFRDGKRDVTVPV-RPRV---KVNSPPAAIDAAIAGLGLTRVLSYQVAE 246


>gi|320657001|gb|EFX24836.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 299

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 142/315 (45%), Gaps = 37/315 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA   +F+ AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPIFIAVAEESNFSKAAARLGVTRSAVSQGIRRLEDAFGTMLVMRTTRSVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLY 119
           E G +LH+  S     +ET   E+    V P G LRIA T  + +  L G L   F    
Sbjct: 61  EAGERLHKSLSLPLSGIETAFEEMVSDHV-PRGLLRIAVT-SIAEEFLSGPLIASFAAAN 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHY 173
           P + + +++ +++ DI     D  +RL + I+   +       QR++V       A+P Y
Sbjct: 119 PAVTLDIVVTDEEFDIVAAGYDAGVRLGEVIEKDMIAVPLTGRQREMVV------ASPSY 172

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSY 228
           L     P+  +EL  H  I +       +  + W         D  I EP+I+    N  
Sbjct: 173 LAANSTPVHPRELVNHKCIGWRQ--SPEVAPYRWPFEENGRAFDLAI-EPQITT---NDL 226

Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKL 283
             +++  + G GI +      +   ++  LV +++D +   P F +YF  P+      KL
Sbjct: 227 RLMLRLALAGGGITIATQETFRPYIESGKLVSLLDDFLPQFPGFYLYF--PQRRNIAPKL 284

Query: 284 KAFRNFIFLKARDWK 298
           +A  + +    ++W+
Sbjct: 285 RALIDHV----KEWR 295


>gi|293608372|ref|ZP_06690675.1| predicted protein [Acinetobacter sp. SH024]
 gi|292828945|gb|EFF87307.1| predicted protein [Acinetobacter sp. SH024]
 gi|325121895|gb|ADY81418.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 296

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT  G K
Sbjct: 5   DCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLRTTLLTRTTRQMNLTSCGEK 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP I+I 
Sbjct: 65  FYQHSKVILSEFEWAAYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPSIKID 124

Query: 126 LILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L + ++ +D++ +  D  IR+    P  ++S I   L T   + YA P Y      P S+
Sbjct: 125 LFMTDQLLDMNNNKFDLTIRVDGSPPNLANSKI---LNTYQRYLYATPEYFNQHGLPDSL 181

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGS 239
           +EL +H  LI + D   K +          +   E   +C  V   N+   ++  C+   
Sbjct: 182 EELKEHKFLIYYQDSRHKKL-------IFQKDQKEVSFNCFPVMTCNNGELLLDMCLKDH 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+
Sbjct: 235 GIVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFL 288


>gi|167589853|ref|ZP_02382241.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 312

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 131/288 (45%), Gaps = 10/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +DKLR+F  V    SFT AA+   L++  +SR I+ LE   G +L +R  R ++LTE   
Sbjct: 4   FDKLRLFRSVVELRSFTRAADVHGLARPVVSRAIAELEARFGSRLLHRTTRQVSLTETAE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L+   + V  +L+  + E Q  + +P G LR+     +  N L   +  F   +P +++
Sbjct: 64  RLYERCAAVLDELDALEAEAQTQTREPDGLLRLVAHTTVALNRLVPLIAGFKAAHPKVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L  + +D+  +  D  + +   + S + + R L  I +   A P YL+    P +  
Sbjct: 124 DVTLTERPVDLVGEGFDIGVVVPYMLTSETTVVRLLERIPVVIVATPRYLEQHPRPATPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  ++    + +    F     T+  P+   R      NS +   +  +   GI +
Sbjct: 184 DLADHLFVSMSPALRRPALAFRVGGDTLTVPL---RFDVAS-NSPVFNREMVLRHFGIGV 239

Query: 244 LPDYIVK---DNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286
           +P  +V+    +  LVR++E  D++     +   Y        K+KAF
Sbjct: 240 VPRALVEAELASGALVRLLEDADLVDAFVEIKLAYANRALLPAKVKAF 287


>gi|121597488|ref|YP_990531.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|254176537|ref|ZP_04883195.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254203451|ref|ZP_04909812.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254205330|ref|ZP_04911683.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|121225286|gb|ABM48817.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|147745690|gb|EDK52769.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754916|gb|EDK61980.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|160697579|gb|EDP87549.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
          Length = 453

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 24/300 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 149 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 208

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 209 NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 264

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 265 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAV 323

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVL 237
           P    +L   + I  G L       F       R  P G      L+V S L   Q  + 
Sbjct: 324 PRHPDDLPGSHWIGHGGLANLSYSVFGNEGRSVRIQPPGR-----LKVKSVLLAHQMALA 378

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 379 GAGISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 433


>gi|83716945|ref|YP_439590.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650770|gb|ABC34834.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 430

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 113 DNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQR 172

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    PD+ ++
Sbjct: 173 YFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 232

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P + ++
Sbjct: 233 LTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPTTPED 292

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSG 240
           L KH  +          E   W   ++R  GE  +  L     Q N   ++      G G
Sbjct: 293 LAKHVCLRLDTPASPGGE---W--RLERDDGEETVYALPPAPFQANVPDALSVAVRAGRG 347

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F
Sbjct: 348 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTF 396


>gi|325523710|gb|EGD01975.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 306

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 90/187 (48%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVELRSFTRAADMHGLARPVVSRAVADLEARFGGRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   + V  +L+  ++E Q  + +P G LR+        N L   +  F   +P +++ 
Sbjct: 65  LYERCAAVLDELDALELEAQTQTREPEGLLRLVVHTTAALNQLVPLIAGFKSAHPKLRLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  I +   + S + + R +  I     A P YL+    P +  +
Sbjct: 125 VTLTERPVDLVGEGYDIGIVVPYMLTSETTVVRLIARIPFVIVATPAYLRTHPRPATPAD 184

Query: 186 LDKHNLI 192
           L  H  +
Sbjct: 185 LADHPFV 191


>gi|238895200|ref|YP_002919935.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547517|dbj|BAH63868.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 303

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 119/278 (42%), Gaps = 23/278 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  W+  R F  V + GS + A+  L+++Q +  R I+GLE  +G  LF R   GL  T+
Sbjct: 4   SIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLLATD 63

Query: 62  QGSKLHRVTSE----VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             +   RV +E        LE T         +  G +R+A +  +G  +L   +     
Sbjct: 64  A-ALALRVHAEEMDNTARALERTAANFSRDRAELRGVVRVAASEVVGAEVLPPLVARLRQ 122

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P+I I+L+L N+  D+    AD A+R+  P Q   LI R+L  I +  +A   YL   
Sbjct: 123 ACPNIVIELMLSNRFQDLLHREADIAVRMVAP-QQEQLIARRLGRIELGLHATAAYLTRQ 181

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P ++ +L  H LI F    P             R         ++ +S L+ +     
Sbjct: 182 SLPATLDDLASHALIGFDSATPLVRRALQAYPRFQR-----EAFAMRTDSDLAQLSLIRA 236

Query: 238 GSGIAL----LPDYIVKDNPNLVRIMEDVITPSFTVYF 271
           G+GI +    L D I+         ++ V+   F++Y 
Sbjct: 237 GAGIGICQVPLADGIIP--------LQRVLAADFSLYL 266


>gi|221229299|gb|ACM10022.1| AmpR [Stenotrophomonas maltophilia]
 gi|221229302|gb|ACM10023.1| AmpR [Stenotrophomonas maltophilia]
 gi|221229317|gb|ACM10028.1| AmpR [Stenotrophomonas maltophilia]
 gi|221229320|gb|ACM10029.1| AmpR [Stenotrophomonas maltophilia]
 gi|221229326|gb|ACM10031.1| AmpR [Stenotrophomonas maltophilia]
 gi|221229329|gb|ACM10032.1| AmpR [Stenotrophomonas maltophilia]
 gi|221229335|gb|ACM10034.1| AmpR [Stenotrophomonas maltophilia]
 gi|221229340|gb|ACH95426.2| LysR transcriptional factor [Stenotrophomonas maltophilia]
          Length = 288

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 2/141 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT AA +L +SQ+++S QI GLE  +GI+LF+R  RG+ LT++G+ 
Sbjct: 9   NALRAFEAAARHQNFTRAALELCVSQAALSHQIRGLEDRLGIRLFHRLPRGVALTDEGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+ V +E + ++  +         +    L +  T   G   L   L  F   +PDI+++
Sbjct: 69  LYPVLNESFERISASIARYTGGPAREVLTLGVVGTFATG--WLLPRLAAFEAAHPDIELR 126

Query: 126 LILDNKDIDISMDYADCAIRL 146
           L   N  ID++ +  D AIR 
Sbjct: 127 LQTHNNRIDLAGEGLDLAIRF 147


>gi|190893179|ref|YP_001979721.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190698458|gb|ACE92543.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 302

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 134/294 (45%), Gaps = 17/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + VF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FDAMGVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E  +     +  +P G LR+     L ++ +  +L  FL  YP+I+ 
Sbjct: 64  AYYQRCLSILADIEDAEGAF--AGARPKGLLRVDVHGTLARHFVLPSLPSFLETYPEIEF 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R+  P   S ++ R+L  +     A+P Y+     P    
Sbjct: 122 YMSEGDRLVDLVREGIDCVVRVGTP-GDSDMVARRLAMLDEITLASPAYIAAHGLPQHPD 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L  H ++ F     G L+P    +F     V R I  P  + + VN+  S +    +G 
Sbjct: 181 RLTGHRMVGFRSSSTGTLLPL---EFIVDGAV-RNITLP--AAVAVNAAESYISAARMGL 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  +P Y  +++     LV ++E+       V   YP   + + +++ F +++
Sbjct: 235 GLIQIPRYHAENDLAEGRLVHVLENFPLTPTPVSLLYPRNRQLSPRVRVFIDWL 288


>gi|254182819|ref|ZP_04889412.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184213353|gb|EDU10396.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 448

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 144 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 203

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 204 NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 259

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 260 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYARRHAV 318

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L   + I  G L       ++      R +       L+V S L   Q  + G+
Sbjct: 319 PRHPDDLPGSHWIGHGGL---ANLSYSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGA 375

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 376 GISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 428


>gi|170722395|ref|YP_001750083.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169760398|gb|ACA73714.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 306

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 130/296 (43%), Gaps = 15/296 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  VA   SF  AA  L  S S+++R I  LE   G KL  R+A  +TLT+ G +L
Sbjct: 8   EIQAFVSVAHKRSFVAAARALGRSPSAVTRAIQALEDNSGCKLLNRNANAVTLTDAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +         EL   S    G +R       G+++L G L  F   +P + + +
Sbjct: 68  LPHAERLLDVQRDAADELAALSGSAQGWIRFGVPQLFGEHVLPGVLAAFSRRHPQVTLDV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D  +   D  +R   P QSS LI   L     H YA+P YL     P   ++L
Sbjct: 128 HYRDEALDPLLGKLDFVVRGAFP-QSSELIGYPLWRYQRHLYASPDYLARHGMPKRPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNW----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             H+LI      P+ ++ +++      T  RP   PR   L+++S  ++    + G+GIA
Sbjct: 187 ADHSLILH--TAPRILKAWHFSRDGRITSLRP--HPR---LRLSSGDAVYHSTLAGAGIA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L D++ +       LVR+  D    S T       A+   G+L A    + L  R
Sbjct: 240 RLADWVGEAQVSAGRLVRVCADYRLTSSTGQDPQMHAVYPAGELPARVRELLLALR 295


>gi|119471060|ref|ZP_01613619.1| putative transcriptional regulatory protein (LysR family)
           [Alteromonadales bacterium TW-7]
 gi|119445900|gb|EAW27181.1| putative transcriptional regulatory protein (LysR family)
           [Alteromonadales bacterium TW-7]
          Length = 305

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 1/182 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSFT AA++  +  SS+SR+++ LE  +G  L  R  R + LTE G   +
Sbjct: 7   IRYFIKVVDTGSFTKAAKEFGVPPSSLSRRVADLEKSLGATLLKRSTRIVKLTEVGRIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +L  +   ++     P G+L I+  +  G  +L   L EF  LYP I + + 
Sbjct: 67  NDVQQILGQLAQSHETVKSYQTTPMGRLSISCMVGFGDKILMPLLDEFSALYPQIILDVS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++   +  D  D AIR      +  ++  KL+       A+P YLK   EP  + EL 
Sbjct: 127 LSDELSTLGRDDVDIAIR-GGYAPNERVLAIKLMDNEFIPVASPSYLKEYGEPTHVLELK 185

Query: 188 KH 189
            H
Sbjct: 186 DH 187


>gi|148547788|ref|YP_001267890.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511846|gb|ABQ78706.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 313

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 11/146 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W  L VF   AR  SFT  AE+LH++  ++S+Q+  LE  +G +LF R ARG+ L+ +
Sbjct: 10  FVW--LHVFACAARHLSFTRCAEELHITPGAVSQQMRQLEERLGYRLFLRRARGVELSAE 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +  +E Y  +E   + L    ++  G LR+ +        L   L  F   YPDI
Sbjct: 68  GQRLAQTVAEAYGSIEAELLRLDAGEIR--GTLRVRSIPSFLAKWLTPRLPRFQQRYPDI 125

Query: 123 QIQLILDNK-------DIDISMDYAD 141
           +++L+ ++        D D+++D  D
Sbjct: 126 ELRLVAEDSAQALTPGDFDLAIDLND 151


>gi|310829906|ref|YP_003962263.1| hypothetical protein ELI_4361 [Eubacterium limosum KIST612]
 gi|308741640|gb|ADO39300.1| hypothetical protein ELI_4361 [Eubacterium limosum KIST612]
          Length = 294

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 79/126 (62%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +++  +VFY VAR G+ T AA+ L++SQ ++S+ I  LE E+  +LF+R+ +G+TLT
Sbjct: 1   MNVNFEHYKVFYYVARHGTITQAAQALYISQPAVSKSIHLLEKELSCELFHRNQKGMTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L+   ++ Y +L   + +L E     +G +R+ T+  + +  L   L++F  LYP
Sbjct: 61  PEGEMLYGHVAKAYEQLALGEKKLWEMLNLNNGVVRLGTSDMIARFFLLPYLEKFHSLYP 120

Query: 121 DIQIQL 126
           DI+I +
Sbjct: 121 DIRINM 126


>gi|221229332|gb|ACM10033.1| AmpR [Stenotrophomonas maltophilia]
 gi|221229339|gb|ABX44760.2| AmpR [Stenotrophomonas maltophilia]
          Length = 288

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 2/141 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT AA +L +SQ+++S QI GLE  +GI+LF+R  RG+ LT++G+ 
Sbjct: 9   NALRAFEAAARHQNFTRAALELCVSQAALSHQIRGLEDRLGIRLFHRLPRGVALTDEGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+ V +E + ++  +         +    L +  T   G   L   L  F   +PDI+++
Sbjct: 69  LYPVLNESFERISASIARYTGGPAREVLTLGVVGTFATG--WLLPRLAAFEAAHPDIELR 126

Query: 126 LILDNKDIDISMDYADCAIRL 146
           L   N  ID++ +  D AIR 
Sbjct: 127 LQTHNNRIDLAGEGLDLAIRF 147


>gi|221229314|gb|ACM10027.1| AmpR [Stenotrophomonas maltophilia]
          Length = 288

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 2/141 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT AA +L +SQ+++S QI GLE  +GI+LF+R  RG+ LT++G+ 
Sbjct: 9   NALRAFEAAARHQNFTRAALELCVSQAALSHQIRGLEDRLGIRLFHRLPRGVALTDEGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+ V +E + ++  +         +    L +  T   G   L   L  F   +PDI+++
Sbjct: 69  LYPVLNESFERISASIARYTGGPAREVLTLGVVGTFATG--WLLPRLAAFEAAHPDIELR 126

Query: 126 LILDNKDIDISMDYADCAIRL 146
           L   N  ID++ +  D AIR 
Sbjct: 127 LQTHNNRIDLAGEGLDLAIRF 147


>gi|163856400|ref|YP_001630698.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163260128|emb|CAP42429.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 299

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 18/243 (7%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSF  AA+ L LS   + + +  LET +G +L  R  R  +LT+ G   +     V  ++
Sbjct: 17  GSFAAAADALGLSGPMVGKHVRALETRLGARLLIRTTRRQSLTDFGQAYYERCKVVLAEV 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E       +   +P GKLR+   +  G++ +   L      YP +++ L  +++ +D++ 
Sbjct: 77  EAADALAADQLGEPRGKLRVTMPVHFGRHCVAPVLLRLAQQYPALELDLSFNDRFVDLAE 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--- 194
              D AIR       + +I R++    M   A+P YLK   +P ++  L +H  I +   
Sbjct: 137 GDYDIAIRTGDLADKAGVIARRVARQRMIVCASPAYLKTHGQPATVAALGQHQAIVYRRS 196

Query: 195 GDLIPKCMEDFNWLATVDRPIGEPRISCLQVN-----SYLSIMQYCVLGSGIALLPDYIV 249
           G + P       WL   D   G P    +  N        +I     LG G+A LP +++
Sbjct: 197 GRVSP-------WLFPKD---GHPPEEIVPANRVRMDDLDAIADAATLGMGLAWLPSWLI 246

Query: 250 KDN 252
            D 
Sbjct: 247 SDR 249


>gi|26989862|ref|NP_745287.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24984769|gb|AAN68751.1|AE016507_2 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 313

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 11/146 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W  L VF   AR  SFT  AE+LH++  ++S+Q+  LE  +G +LF R ARG+ L+ +
Sbjct: 10  FVW--LHVFACAARHLSFTRCAEELHITPGAVSQQMRQLEERLGYRLFLRRARGVELSAE 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +  +E Y  +E   + L    ++  G LR+ +        L   L  F   YPDI
Sbjct: 68  GQRLAQTVAEAYGSIEAELLRLDAGEIR--GTLRVRSIPSFLAKWLTPRLPRFQQRYPDI 125

Query: 123 QIQLILDNK-------DIDISMDYAD 141
           +++L+ ++        D D+++D  D
Sbjct: 126 ELRLVAEDSAQALTPGDFDLAIDLND 151


>gi|27382703|ref|NP_774232.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355875|dbj|BAC52857.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 303

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 124/287 (43%), Gaps = 17/287 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V  +G F+ AA +L++S + +S  +  LE  +G++L  R  R + LTE G   +
Sbjct: 7   LEVFSRVVETGGFSAAARKLNMSTTMVSNHVQALEDRLGVRLLQRTTRRVNLTEIGKAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E       E    P G LR+     +    +   + + L  YP+++I L 
Sbjct: 67  DRCVQILADIEQADDIASELQSVPRGTLRVHVATHM-VPFVAPVVAKLLSAYPELKIDLR 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-----MHAYAAPHYLKNCREPLS 182
           +   D+D+  +  D A+R+  P   SSLI R L T        H Y   H      + L+
Sbjct: 126 MGEADVDLIEEGYDVALRMTPP-PDSSLIVRSLATWRHVLCCSHEYIEKHGRVQKLDELA 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                +H    FGD       ++ +L     P           NS  ++ +  + G+ + 
Sbjct: 185 AHNCGRHLNYPFGD-------EWRFLDRKGTPASVRISGSFVTNSGEALRKVALGGAAVC 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           L+  ++++D+     LVR++ +  T   ++   YP     + K++ F
Sbjct: 238 LMAGFLIQDDLEAGRLVRLLPEYRTVELSMNAVYPHKHHLSAKVRTF 284


>gi|94314139|ref|YP_587348.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93357991|gb|ABF12079.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 308

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 15/187 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVG-IKLFYRHARGLTLTEQGSK 65
           +L  F  V+R  SF  AAE+L ++Q+++SR +  LE  +G  +LF R ++G+ LTE+G +
Sbjct: 10  ELHAFLAVSRLRSFRLAAEELCVTQAAVSRAVQRLEQHLGDCQLFERSSQGVALTEEGRQ 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L ++T      LE     LQ    +  GKLR++    LG   L   L  F   +PD+ ++
Sbjct: 70  LRKLTERHVLALEAAATRLQ--GPRADGKLRLSVIPTLGTQWLLPRLARFRAAHPDVDVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKP-------IQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +     D D S D  D  I +++P       +Q   L+ R+LV +      AP  L   +
Sbjct: 128 MRQFRHDEDFSRDDIDIWIEVKRPKRRWPARMQVKYLLGRELVPV-----CAPSLLSRLK 182

Query: 179 EPLSIQE 185
            P  + E
Sbjct: 183 RPRDLLE 189


>gi|206564502|ref|YP_002235265.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198040542|emb|CAR56528.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 327

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 1/179 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA QLH +Q +ISR++  LE+ +G++L  R    + LT 
Sbjct: 26  GYRFELMETFVRIVEAGSLSAAAVQLHTTQPTISRRLQALESSLGMRLLQRTTHAMRLTV 85

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   E+       + +L+ +  +P G LR+A     GQ      L +FL  YP 
Sbjct: 86  DGERCFKRAKELLASWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVVPLAQFLRDYPR 145

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++ +L ++  D      DCAI++ +P     ++  +L  +     AAP  L     P
Sbjct: 146 VSVEWLLQDEVRDFVGSGIDCAIQVGEPT-DPGVVAIRLTKVPRFVVAAPSVLNGADVP 203


>gi|115358206|ref|YP_775344.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283494|gb|ABI89010.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 340

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 134/297 (45%), Gaps = 25/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF+  A+++H+S S+++R+I+ +E  +G+ L +R    +TLTE G    
Sbjct: 32  MRAFVRVVEMGSFSAVAKEMHVSTSTVARKITAIEEALGVALLHRSTHSVTLTEAGHIYL 91

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+ + 
Sbjct: 92  ERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQLDVR 151

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D  I   +    + ++ R L        A P YL  C  P +  +L 
Sbjct: 152 LTDNHNDLVAGGYDLDIHEGENYLDNLVVHR-LSRNDSILCATPGYLDRCGRPATPDDLL 210

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGIA 242
            HN + +  + P+   D  W    +   G+ R S L   + ++     +++    G GIA
Sbjct: 211 HHNCLRY--VHPEG--DPRW----ELVRGDARHSVLPAGNLVTDHSELLLEATCAGLGIA 262

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT---------VYFCYPEALKNTGKLKAFRNFI 290
               ++V+D     R+  + + P +          +Y  Y    +++ KL+  ++F+
Sbjct: 263 EFEIWLVRDLLASGRL--EAVLPRYRLHNKLTGEHIYIAYLANRRSSAKLRVLKDFL 317


>gi|327191988|gb|EGE58969.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 298

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 125/296 (42%), Gaps = 18/296 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + SF  A E+L +++S++S+ +  LE  +G+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARSFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119
           E G            ++      +++   +PSG LRI T   + ++ L G  L  F+   
Sbjct: 61  EAGEVFFAAVRPSVRQVRDAMQTVRDMQARPSGLLRI-TVSSIAESFLSGTLLAGFMQAC 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I++ + + + + DI     D A+RL + I+   +           A A+P YL+    
Sbjct: 120 PEIKLDITVTDDEFDIVEAGFDAAVRLGEVIEQDMIAVPVSEPQRQCAAASPAYLERHGG 179

Query: 180 PLSIQELDKHNLITF---GDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYC 235
           P    EL  H  I +    D  P     + W  T  +R         +  N    +++  
Sbjct: 180 PRHPSELRDHACIGWRPRPDTAP-----YRWEFTENNRDFDVAVDPAVTTNDMGMMIRLA 234

Query: 236 VLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             G+GI          Y   D   LV ++ED   P    Y  YP   +   KL+A 
Sbjct: 235 CAGAGITFGMVETFQSYF--DRGELVPLLEDFCPPFPGFYLYYPRRERQPLKLRAL 288


>gi|323491522|ref|ZP_08096701.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323314098|gb|EGA67183.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 310

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 126/292 (43%), Gaps = 15/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  FY  A+ GSF  AA++L +S ++IS+QI  LE  +G  LF R  R + LT +G  L 
Sbjct: 11  LYYFYTAAKFGSFKRAADELFVSAAAISQQIRQLEESLGADLFIRQHRKVVLTMEGEVLF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPS-GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +     E  Q  +++ +  P+  +L I+T     Q+ L   + +F   +PD+++ +
Sbjct: 71  ---EQAMRGFEHLQQGVRQINQDPNPNQLSISTLPSFAQHWLVPKIGDFRNQHPDLELMI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++  D      D  IR   P    +L    L    ++    P Y    +E   I +L
Sbjct: 128 EPTSQLADFQNSSLDLCIRY-GPGNYPNLNAELLFEELLYPVCHPIY----QEQHGIYDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                +T  DLI     D +W   ++          L+ N    +++  +   G+AL   
Sbjct: 183 SD---LTGADLIEDYWRDLDWGIWLNNAGHSTSKPTLKYNGSHFVLEGALSVQGVALAKH 239

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + K   D   LVRI     T  +  Y C P A     K+K F  +IF +A+
Sbjct: 240 TLAKRYIDEGKLVRIGNLAQTTDYNYYLCAPRAYFKRDKIKRFSEWIFEQAK 291


>gi|313498567|gb|ADR59933.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 310

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 122/293 (41%), Gaps = 18/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++E G +  
Sbjct: 7   MRTFTRVVECGSFAAAANALDISAAQVSRIVAELENQLQTRLLHRTTRRLRMSEAGERFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E    E + + + P G LR+     +G  LL   +  +  LYP++ I+L 
Sbjct: 67  ERARQIMLLTEEAVGEARGAHLTPRGHLRLHCPHGMGL-LLMPLVAGYNTLYPEVVIELT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D   +  D  I +   +  S LI   L  I     AAP YL     P   ++L 
Sbjct: 126 LSQRNPDPLAEGHDVVITVDGALPDSQLIAVPLGNIFSIPCAAPGYLDTHGVPERPEDLH 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +      P    D+ +   VD+ +  P  S    N   +++    LG GI LLP Y
Sbjct: 186 GHRCLRMA--YPMYEGDWVFPQGVDQCVIAPNDS-FSTNVADAMLVASELGMGIGLLPFY 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              +      L R++         +Y  YP            R+++  K R W
Sbjct: 243 TASEAIGQGRLCRLLAPYRLRESALYAMYPS-----------RHYLDAKVRTW 284


>gi|254284519|ref|ZP_04959486.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|150425304|gb|EDN17080.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
          Length = 312

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P+   +
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLVQRGTPIHPTD 189

Query: 186 LDKHNLITFGD 196
           L +H+ +   +
Sbjct: 190 LAEHDCLYLAE 200


>gi|86751490|ref|YP_487986.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86574518|gb|ABD09075.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 314

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 120/298 (40%), Gaps = 19/298 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     +AR GSF  AA  L +S +++S  I  LE  +GI+LF R  R ++LT+ G    
Sbjct: 9   LEAVAAIARRGSFRAAALDLGVSTTALSNAIGKLEASLGIRLFNRTTRSVSLTDTGQVFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +        +       +     PSG LRI       + +L   + EFL  YPD+ + L+
Sbjct: 69  KQVGPALQDIRAAVETARSRQATPSGSLRINAFAMAAREILSPLILEFLRRYPDVHVDLV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA-APHYLKNCREPLSIQEL 186
            + + +DI  +  D  +R+   +  S +I   L     +A A +P Y     +P    +L
Sbjct: 129 TEGRLVDIVAEGFDLGVRVAD-LVPSDMIAVSLGRPQRYAVAGSPRYFAEHGKPQGPSDL 187

Query: 187 DKHNLITF----GDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             H  I      G L+    E         VD PI       L   S         +G G
Sbjct: 188 VDHRCIRARLPNGALLRWQFEKDGRAVQIDVDGPI------TLDEASLARTAALEGIGIG 241

Query: 241 IALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +  D +   +   L+R++ED   P   +   YP     +  +KAF +     AR W
Sbjct: 242 FFMEQDVVGDIEAGRLIRVLEDWTPPFAGLCLYYPGRRNPSAAMKAFISL----ARAW 295


>gi|115358714|ref|YP_775852.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284002|gb|ABI89518.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 322

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 3/284 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  +
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASRDYLARHGTPTTPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +          E        +  + E + +  QVN   ++      G GIA + 
Sbjct: 185 LPNHVCLRLDTPASPASEWRLERGDDEETVYELQPAPFQVNVPDALCVAVRAGRGIACVA 244

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            Y V D+     L+R++ D    + +VY  Y        K++ F
Sbjct: 245 LYTVLDDLREGRLIRVLPDYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|301168012|emb|CBW27598.1| putative LysR-family transcriptional regulator [Bacteriovorax
           marinus SJ]
          Length = 299

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 136/285 (47%), Gaps = 5/285 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L ++  +  + SF+  AE L++ +S++S  I  LE ++G +L  R  R +++T++G  L+
Sbjct: 7   LSIYVKLCETLSFSKTAEALNIPRSTVSDSIKRLEEDLGTELLKRTTRKVSVTDEGHLLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   L   +      S    G++R+     L + ++   L EF L YP+I++++ 
Sbjct: 67  EKAQNVLSDLIDLESSFTGISSTVEGRVRVDMATILAERVIIPRLPEFSLQYPEIKLEIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++D+D+  +  D  IR  K ++ SSLI +++    +    +  Y      P S+  L 
Sbjct: 127 SSDRDLDLVAEGIDFVIRAGK-LKDSSLIAKRIGKHKIVNCVSRSYADTYGIPRSLDSLH 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KH  + +        + F +L      + + + +   VN+ +S    C+ G GI  +P+ 
Sbjct: 186 KHYQVCYLQNFGSGKDGFEYLDGSRVKMIKMK-TFATVNNTVSYQAACLAGLGIIQVPEI 244

Query: 248 -IVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            I+K  ++  ++++++    P   VY  Y    +   ++K F N+
Sbjct: 245 GILKYLESGEMIQVLKKYEMPPMNVYLLYTNRERIPSRVKVFMNW 289


>gi|221212252|ref|ZP_03585230.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168337|gb|EEE00806.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 301

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 132/298 (44%), Gaps = 21/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR GSFT AA++L ++  +ISR +  LET +G  LF R  R + LT+ G  
Sbjct: 9   NSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLETWLGKPLFERLNRRVVLTDAGRA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGK---LRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                +EV    +  +I L  +     G+   LR+          L   L  F + +P I
Sbjct: 69  ---YLAEVGASFD--RIALATAQQFGQGQQRVLRVNAPATFSLRWLVPKLSSFQVAHPTI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--REP 180
           +++L   N+ ID   D AD  IR   P      +  + ++       AP  L+    R P
Sbjct: 124 EVRLSTSNEPIDKLRDSADLIIR-GGPQTIDGYVADEFLSEVRLPVCAPKLLERTPLRTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +      +  T+  + P+      WLA    P   PR +    + YL+ +Q  + G G
Sbjct: 183 ADLANFTLLHAATYPGMWPE------WLAAAGCPNLVPRHALTLEHFYLT-LQGALDGLG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV--YFCY-PEALKNTGKLKAFRNFIFLKAR 295
           +A+ P  +V D+    R+++    P+     YF Y P    +   ++AFR+++ L  R
Sbjct: 236 VAMGPIALVADDIAEGRLVQPFSGPALPAWRYFTYVPATRIDDEAVRAFRDWLKLAGR 293


>gi|167576917|ref|ZP_02369791.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 299

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 124/290 (42%), Gaps = 15/290 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  I  LE EVG  L  R  R L +T+ G
Sbjct: 8   NLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHIQRLEAEVGASLVVRTTRRLNVTQAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    ET    +   +    G LR++  +D G  ++   L      +P + 
Sbjct: 68  RTFYDACRDILRATETALAAVAGEAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPALD 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P + 
Sbjct: 128 IELQCDDRVVDLVRDSLDVAIRLGR-LADSNHRAVKLGGFERWLVASPAFVARHGVPPAP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQV---NSYLSIMQYCVLGS 239
           + L     +    +    +E  N         GE   + C +    N+  +     + G 
Sbjct: 187 EALGALPYVMLSTVPRTTLELANAR-------GERASVRCRRAFASNTATACRAAVLAGG 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G  +   +   D+     LVR++ D   P   ++  +P A   + K++A 
Sbjct: 240 GFGVATSFSSSDDIAAGRLVRLLPDWSFPPGDIHAVFPSASHPSAKVRAL 289


>gi|254225979|ref|ZP_04919580.1| LysR substrate binding domain protein [Vibrio cholerae V51]
 gi|125621513|gb|EAZ49846.1| LysR substrate binding domain protein [Vibrio cholerae V51]
          Length = 287

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 129/279 (46%), Gaps = 33/279 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GS + AA++L++S+S +S+ +  LE E+G+ L  R  R  TLT+ G + 
Sbjct: 6   QMAIFAHVVEAGSVSAAADKLNVSKSVVSQHLKTLENELGMVLMKRTTRRQTLTDVGEQF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+    E+      +   +P G+ RI  +  L  +L+   + E +  YP ++ +L
Sbjct: 66  YLKCKELNTIAESAWDIASDYQTEPQGRFRITASHALMDSLVAPVIAELMTQYPKLKPEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH----------MHAYAAPHYLKN 176
           I D++ +D+  +  D AIR+  P   SSL Q+++                   +P Y+ N
Sbjct: 126 IADDQHLDLMANDIDMAIRI-GPSHDSSLKQKRIGEFRDVLCGLEERKTKLNESP-YIAN 183

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             +P  I+    H+         +  E   W       I   + SC   NS+ + +    
Sbjct: 184 VWQPKQIE----HHF--------RSAEGQTW-------IYRQQASC-TANSFHTCLALIR 223

Query: 237 LGSGIALLPD-YIVKDNPNLVRIMEDVITPSFTVYFCYP 274
            G+G+ ++PD Y+ +    LV ++ +   P  TVY   P
Sbjct: 224 SGAGVGIVPDFYLSERGSQLVNVVPNYTLPINTVYTLTP 262


>gi|59711702|ref|YP_204478.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59479803|gb|AAW85590.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 311

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 138/296 (46%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +FY +A++GSFT AA+Q+ +S S +S+Q+  LE  + +KL +R  R L LT+ G + 
Sbjct: 7   QMVIFYALAKAGSFTAAAKQMGVSTSHVSKQLGALEETLNLKLVHRTTRSLILTDAGQQF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +Y+ +      + +   + +G LR+  +   G   +   + +    YPD+Q+++
Sbjct: 67  FLYCETIYNAMTEASAIMDDERDEVAGILRLGLSQSFGTMHIIPAIDKLRNQYPDLQVEV 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+  D  D  +   + +    + QR L   +    A+P YL + + P    +L
Sbjct: 127 RLFDHQADMLKDGLDLWVTNFEDLPEGYVAQR-LADSNFVLAASPDYLIDKKVPHHPLDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGSG 240
            +HN +T+     +  +  NW    D   G   + C++V+         ++    + G G
Sbjct: 186 VEHNCLTYQS---RYRDYSNW----DFSKGNESL-CVKVSGNYRVDLAEAVRDATISGWG 237

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFT------VYFCYPEALKNTGKLKAFRNFI 290
           IA L  Y++ +  N  ++++  + P +       +Y  YP       K+ A  +F+
Sbjct: 238 IAYLASYLLTNEFNDGKLIQ--LLPGWKASQKMPIYAVYPSRKHLPRKISAVIDFL 291


>gi|226942808|ref|YP_002797881.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226717735|gb|ACO76906.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 299

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 133/292 (45%), Gaps = 19/292 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F  +   GSFT AA  L + +++ +  I  LE  +G +L  R  R +  T  G 
Sbjct: 4   FDALQLFTRIVELGSFTRAAGALDIPRATATHAIKMLEERLGARLLERTTRQVRPTPDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +  L  +   P G LR+         ++   ++EF   YP I++
Sbjct: 64  VFYERCKRILGDLDDAESALSTAMANPRGSLRLDLHGAHANLIILPRIQEFHRRYPQIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R  +P + SSL+ R+L  +     A+P YL     P   +
Sbjct: 124 VISSGDRLVDLVGEGIDCVVRAGQP-RDSSLVARRLALMPEVVCASPDYLDRHGRPRHPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-----MQYCVL-G 238
           EL  H  + F          F++L  +D   GE  ++  +V  ++S+        C L G
Sbjct: 183 ELAAHQAVGFFSSNHDIRYPFSFL--ID---GE--MTKFEVGGWISVNDAECYSTCALSG 235

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVIT----PSFTVYFCYPEALKNTGKLKAF 286
            G+  +P + V+++    R +E+V+T    P   V   YP   + + +++ F
Sbjct: 236 CGLIQVPRFRVEEHLRSGR-LEEVLTEWPSPGLPVSALYPYHRQLSPRVRVF 286


>gi|269101924|ref|ZP_06154621.1| glycine cleavage system transcriptional activator GcvA
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161822|gb|EEZ40318.1| glycine cleavage system transcriptional activator GcvA
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 303

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 132/299 (44%), Gaps = 23/299 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  +     ++ E   K  G L I+         L   L +F   +PDI ++
Sbjct: 69  YFLDIKDIFSSIADATDKVLERGAK--GALTISLPPSFAIQWLVPRLIDFNEQHPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   + D     D  D AI   +    S L   KL    M    +P  L   +   ++ +
Sbjct: 127 IKAVDLDEGSLTDDVDVAIYYGRG-NWSGLRADKLYQEFMMPLCSPMVLTGPKPLRTLDD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS------YLSIMQYCVLGS 239
           L  H L+   D   K  E  N++   D       I  + VN          ++Q    G 
Sbjct: 186 LKNHTLLH--DTSRK--EWKNYVRQYD-------IKGVNVNQGPIFSHSTMVLQAAAHGQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIAL  + + +   +   LV   ++V+      Y    E   ++G+++AFR+++  KAR
Sbjct: 235 GIALGNNVLAQPELEAGRLVCPFDEVLMSKNAFYLVCQEKQADSGRIQAFRDWVLAKAR 293


>gi|229528207|ref|ZP_04417598.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229334569|gb|EEO00055.1| transcriptional regulator [Vibrio cholerae 12129(1)]
          Length = 312

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P+   +
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLVQRGTPVHPTD 189

Query: 186 LDKHNLITFGD 196
           L +H+ +   +
Sbjct: 190 LAEHDCLYLAE 200


>gi|221209493|ref|ZP_03582474.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221170181|gb|EEE02647.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 306

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 98/194 (50%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDKLDGVTTFVQVVESGSFALAAERLGMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +P GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALAELEAAEADLDCGRNEPRGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDLIEEGIDLAVRIGPLEDSTSLAVRRLGTQYGSLGAAPSYLARYGMP 180

Query: 181 LSIQELDKHNLITF 194
            S+ +L  H  + +
Sbjct: 181 QSLDDLKNHRTVAY 194


>gi|99078314|ref|YP_611572.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035452|gb|ABF62310.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 299

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 112/242 (46%), Gaps = 15/242 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  +   G       +L LS +++S +++ LE   G +L  R  R ++LT +G +
Sbjct: 4   DNLSLFLRIVEKGGLAAGGRELGLSPATVSERLAALEAHFGARLLNRTTRSISLTVEGRE 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  + E  +  ++  + + +G +R++   DLG+N L   L  FL   P++ I 
Sbjct: 64  LVHGAQRLLAETEELESRIRLGTQQIAGPIRVSAPSDLGRNRLAPILDRFLEQNPEVSID 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D++    D AIR  + +  SSLI R+L        AAP YL+    P    +
Sbjct: 124 LHLSDGFVDMATMGLDMAIRYGE-LADSSLIMRRLADNARIVCAAPSYLEANGTPGDPLD 182

Query: 186 LDKHN--LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGS 239
           L  HN  L+ FG  +     D  W   +D   G  +   ++ N   +    I Q+ + G 
Sbjct: 183 LAHHNCLLMRFGSDV-----DRAWPFDID---GRRKRVVVRGNRIANDGDLIRQWALEGR 234

Query: 240 GI 241
           GI
Sbjct: 235 GI 236


>gi|312884229|ref|ZP_07743938.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368002|gb|EFP95545.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 297

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 132/287 (45%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V AR  S++ AAE+L +SQ+++S++I  LE  +G KLF R  R + LTEQG  L 
Sbjct: 11  LRYFEVAARLNSYSRAAEELFISQAAVSQKIRQLEDGLGCKLFVREGREMRLTEQGKILF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S+    + T   +LQ   V+  G L +++T       L   L +F   +P+I I++ 
Sbjct: 71  KHVSQGLESIITGLNQLQSEPVE--GLLCVSSTPSFASCWLLPKLWQFSSQHPNIPIRIE 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPLSIQEL 186
               + ++     D AI   + + ++  + ++ L    ++ + +PH L N  E  S ++L
Sbjct: 129 TSCDEPNLKQGNIDLAIWQGEELGNTVGLHKEFLFEEPIYPFCSPH-LANNIELTSPEQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               LI +           +W A     + +  +   +V+++   M   V G G  L  D
Sbjct: 188 LSSWLIHYQS---GGYPWQSWFAQAGVKMNKESVQWTEVSTFDHAMNAVVAGHGACLASD 244

Query: 247 YIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  D  N   L++  +  + P       Y        +++AF N++
Sbjct: 245 SLANDFVNRGLLIKPFQIGMNPGIQFNLFYDHESPRLKRIQAFTNWL 291


>gi|260773207|ref|ZP_05882123.1| transcriptional regulator LysR family [Vibrio metschnikovii CIP
           69.14]
 gi|260612346|gb|EEX37549.1| transcriptional regulator LysR family [Vibrio metschnikovii CIP
           69.14]
          Length = 317

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 132/290 (45%), Gaps = 11/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +   FT AA+QL +S S +S+Q++ LE  +GIKL  R  R +T+TE G   
Sbjct: 8   QMVIFATLVQQKGFTAAAKQLGVSVSHVSKQLALLEASLGIKLVQRTTRSVTITEAGQGF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +E+   ++  Q E++    + +G LR+  +   G   +   L+     YP++Q+++
Sbjct: 68  YWHCAELLRLVDEAQAEVESQRDEVAGLLRLGLSQSFGTLHVLPALESLRQRYPELQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + I    + QR L        A+P YL +   P + + L
Sbjct: 128 HLFDHRVDMLQEGLDLWITSNEHIPQGYIAQR-LADSRFVVVASPDYLLHHGTPHTPEAL 186

Query: 187 DKHNLITFGDLIPKCMEDFN-W-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +HN + +         D+  W  A  D  +         V+   ++    V G G+A L
Sbjct: 187 SEHNCLIY----RSWDRDYTRWSFAKSDHKLTIQVSGNYSVDLAEAVRDAAVAGWGVAYL 242

Query: 245 PDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y++KD   +  L++++ D     +   Y  YP       K  A  +FI
Sbjct: 243 ATYLLKDEFRHGQLIQLLPDWHANQNMPFYAVYPSRQHMPKKTSAVIDFI 292


>gi|271498849|ref|YP_003331874.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342404|gb|ACZ75169.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 314

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 109/251 (43%), Gaps = 30/251 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S S++S+ ++ LE E+ +KL  R  R + LTE G   +
Sbjct: 7   MSVFASVVEFGSFTAAARQLAMSVSAVSQTVTRLEDELQVKLLNRSTRSIGLTEAGRIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H+      +L   +  P G LRI ++  + QN+L     + L  YP + + L+
Sbjct: 67  HGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLATMTTDMLKEYPGLSVNLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL   +L ++ M   AA  YL     P       
Sbjct: 127 CGIPAPDLIADGLDIVIRV-GALQDSSLYSTRLGSMPMVVCAAKSYLAQHTTPEK----- 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-------------VNSYLSIMQY 234
                      P  + + +WL    RP  E  +   +              N  ++++++
Sbjct: 181 -----------PGDVSNASWLEYSVRPDSEFELIAPEGITTRLTPQGRFVTNDPVTLIRW 229

Query: 235 CVLGSGIALLP 245
              G+GIA +P
Sbjct: 230 LKNGAGIAYVP 240


>gi|170697774|ref|ZP_02888860.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137276|gb|EDT05518.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 324

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 134/297 (45%), Gaps = 25/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF+  A+++H+S S+++R+I+ +E  +G+ L +R    +TLTE G    
Sbjct: 16  MRAFVRVVEMGSFSAVAKEMHVSTSTVARKITAIEEALGVALLHRSTHSVTLTEAGHIYL 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+ + 
Sbjct: 76  ERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQLDVR 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D  I   +    + ++ R L        A P YL  C  P +  +L 
Sbjct: 136 LTDNHNDLVAGGYDLDIHEGENYLDNLVVHR-LSRNDSILCATPGYLDRCGRPATPDDLL 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGIA 242
            HN + +  + P+   D  W    +   G+ R S L   + ++     +++    G GIA
Sbjct: 195 HHNCLRY--VHPEG--DPRW----ELVRGDARHSVLPAGNLVTDHSELLLEATCAGLGIA 246

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT---------VYFCYPEALKNTGKLKAFRNFI 290
               ++V+D     R+  + + P +          +Y  Y    +++ KL+  ++F+
Sbjct: 247 EFEIWLVRDLLASGRL--EAVLPRYRLHNKLTGEHIYIAYLANRRSSAKLRVLKDFL 301


>gi|170737242|ref|YP_001778502.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819430|gb|ACA94012.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 297

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 123/293 (41%), Gaps = 23/293 (7%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR    F  V   G+FT AA +L +S   + + +  LE  +  +L  R  R  +LT+ 
Sbjct: 2   DRLRAMETFVAVVEGGNFTEAARRLEISAVMVGKYVRELEERLAARLLERTTRRQSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         +   +  ++     PSG LRI+  I  G  ++      F   YP +
Sbjct: 62  GRVFYDDAKRALEHMRIAETSVERLRASPSGTLRISAPITFGACVIAPLAATFRQRYPLV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+++D+  +  D AIR+ + +  + L+ R L    M   A+P YL     P +
Sbjct: 122 RVELELSNRNVDLIDEGFDLAIRIGE-LGDADLVARPLTRYRMVICASPGYLAQYGRPQT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCV 236
            Q+L  H+          C+    W +     +G+         S    N    +    +
Sbjct: 181 PQDLSAHH----------CLFHSVWSSRNGWKLGDDDSTHFSAESGFTCNDGNGLRMAAI 230

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+G+ L P+ +V  +     LV++++        V+  Y +  +   KL  F
Sbjct: 231 AGAGLLLQPEVLVSHDLASGALVQVLQGYEPKPHPVHIVYRQDRRPLPKLTRF 283


>gi|223983122|ref|ZP_03633318.1| hypothetical protein HOLDEFILI_00598 [Holdemania filiformis DSM
           12042]
 gi|223964928|gb|EEF69244.1| hypothetical protein HOLDEFILI_00598 [Holdemania filiformis DSM
           12042]
          Length = 309

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 2/126 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  V R+GS T AAE LHLSQ ++S  I  LE   GI LF R ++ L LTE G+K+ 
Sbjct: 6   LRIFVEVCRTGSITKAAESLHLSQPAVSLAIRQLEDYYGILLFDRISKKLYLTESGNKML 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +    +   +E Q  +   +G LRI ++I  G  +L   ++ F L +P I+ Q++
Sbjct: 66  SYASHIIESFD--DMETQLKNWDSAGTLRIGSSISTGTQMLPQLVRRFNLRFPQIRTQVL 123

Query: 128 LDNKDI 133
           +DN  I
Sbjct: 124 IDNSRI 129


>gi|221229308|gb|ACM10025.1| AmpR [Stenotrophomonas maltophilia]
 gi|221229311|gb|ACM10026.1| AmpR [Stenotrophomonas maltophilia]
          Length = 288

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 2/141 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT AA +L +SQ+++S QI GLE  +GI+LF+R  RG+ LT++G+ 
Sbjct: 9   NALRAFEAAARHQNFTRAALELCVSQAALSHQIRGLEDRLGIRLFHRLPRGVALTDEGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+ V +E + ++  +         +    L +  T   G   L   L  F   +PDI+++
Sbjct: 69  LYPVLNESFERISASIARYTGGPAREVLTLGVVGTFATG--WLLPRLAAFEAAHPDIELR 126

Query: 126 LILDNKDIDISMDYADCAIRL 146
           L   N  ID++ +  D AIR 
Sbjct: 127 LQTHNNRIDLAGEGLDLAIRF 147


>gi|206580186|ref|YP_002238009.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288934916|ref|YP_003438975.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206569244|gb|ACI11020.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288889625|gb|ADC57943.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 303

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 21/299 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  W+  R F  V + GS + A+  L+++Q +  R I+GLE  +G  LF R   GL  T+
Sbjct: 4   SIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLEAALGQALFTRSQTGLLATD 63

Query: 62  QGSKLHRVTSEVY----HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             +   RV +E        LE T         +  G +R+A +  +G  +L   +     
Sbjct: 64  A-ALALRVHAEAMDNTARALERTAANFSRDRTELRGVVRVAASEVVGAEVLPPLVARLRQ 122

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P+I I+L+L N+  D+    AD A+R+  P Q   LI R+L  I +  +A   YL   
Sbjct: 123 ACPNIVIELMLSNRFQDLLHREADIAVRMVAP-QQEQLIARRLGRIELGLHATAAYLTRQ 181

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P ++ +L  H LI F    P             R         ++ +S L+ +     
Sbjct: 182 GLPATLDDLASHALIGFDSATPLVRRALQAYPRFQR-----EAFAMRTDSDLAQLSLIRA 236

Query: 238 GSGIAL----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+GI +    L D I+     L R++    + +   +    E L+++   K  R F FL
Sbjct: 237 GAGIGICQVPLADGIIP----LQRVLAADFSLNLDTWLVMHEDLRHSPACK--RVFDFL 289


>gi|170740604|ref|YP_001769259.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194878|gb|ACA16825.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 299

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 124/292 (42%), Gaps = 19/292 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  WD  R+   +A       AAE+L ++ S+  R++  +E  +G  LF RH  G   T 
Sbjct: 4   TLAWDDFRLIKAIADQRGLAPAAERLGINASTAFRRLGQIEAALGTMLFERHRAGYAPTP 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  + RV + +   +      L    + PSG+LR+ T   L  +LL   L  F   YP+
Sbjct: 64  AGEAMVRVAARMEEDVAGFSRRLDGQLLAPSGELRVTTADSLFTDLLAPLLARFADRYPE 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ ++L N+ +++S   AD A+R        +L+ R+L TI    Y           P 
Sbjct: 124 VRLDVVLSNRPLNLSKRDADVALRATDE-PPDTLVGRRLATIAWALYG--RAEDGTETPP 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI---GEPRISCLQVNSYLSIMQYCVLG 238
           + +                 +      A V R +    +P    L++++  +++     G
Sbjct: 181 AARRW-------------VSLAQETGAAKVARYVAARADPGRVVLRLDTVSALVAAVEAG 227

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA L        P L+R+ +     +  ++      L++  +++AF +F+
Sbjct: 228 IGIAPLACLAGDRRPGLIRLSQPEPDLAAGLWLLTHADLRHAARVRAFLDFV 279


>gi|52426207|ref|YP_089344.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308259|gb|AAU38759.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 288

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 131/291 (45%), Gaps = 9/291 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +  +  F +    GSF+ AAE+L+L+ S++ + IS LE  +  +LF+R  R +TLT
Sbjct: 1   MNDKFSGIEEFLMTVEMGSFSAAAERLNLTGSAVGKSISRLEQRLNTQLFHRSTRKITLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G         +  +LE  ++ L   S +  G++RI      G++ +   L      YP
Sbjct: 61  REGEVWLASCRRMMEELEQAKLLLSSQSQQIIGEIRIDLPTTYGRSHILPKLLAIQADYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +   ++ +D+  ++ D A+R  +    + +I +++        A P ++    + 
Sbjct: 121 KLYLNISFQDRKVDMIAEHIDIAVRFGELADLTDIIAKQIDCFQNQLCATPAFVSKWGKL 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L     I    +  + M +        +  G P     Q+N   + +Q  +   G
Sbjct: 181 NHPDDLTHFPCIVGNQISWRLMNEQG------KSTGFPLNVQHQINDGDARLQAVLADCG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           IA LPD++++   +   LV+++ +   P   +Y  + + L    K+KA  N
Sbjct: 235 IAFLPDWLIQPAVEAGKLVQLLPEFTPPPEPIYVLWQKKLHLQPKVKAIVN 285


>gi|326795861|ref|YP_004313681.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326546625|gb|ADZ91845.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 292

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 140/310 (45%), Gaps = 37/310 (11%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  +LR F  +A   SFT AAEQL ++Q ++S  I  LET++G+ L +R  R ++LT++G
Sbjct: 2   DIKQLRYFVAIAELASFTKAAEQLGVAQPAVSMAIKKLETDLGLTLIHRADRNISLTDEG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI- 122
           ++L     ++    +   +E+QE      G++R+     LG       L  F   +PDI 
Sbjct: 62  NRLLLHARKIVQSTDDALLEMQELKGFERGEVRVGIPSMLGSYYFPPILMAFRNRFPDIS 121

Query: 123 ---------QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
                    Q+Q +L+N ++D+ +  A+    L + +++  L+Q++     M    A  +
Sbjct: 122 LKVIEGGTWQLQKMLENGELDLGVIVAES---LPESLETQRLLQQE-----MKVVVATDH 173

Query: 174 LKNCREPLSIQELDKHNLITFGD------LIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227
           L + +E ++  E  K  L+ F +      +I K  E+    A V   IG       + N 
Sbjct: 174 LFSKKEYVTPAEFFKEELVMFKEGYFHRRIIDKLAEE----AGVKANIG------FETNL 223

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLV-RIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              I      G GI+ +   ++ D   L+ R  E  I    T+ +     L      +AF
Sbjct: 224 IPLIKSITEQGFGISTMLSMVISDEDQLITRSFEPSIWLDLTIAWRKDSYLSKAN--QAF 281

Query: 287 RNFIFLKARD 296
             F+  + RD
Sbjct: 282 LEFVCEQGRD 291


>gi|315643953|ref|ZP_07897123.1| transcriptional regulator, LysR family protein [Paenibacillus
           vortex V453]
 gi|315280328|gb|EFU43617.1| transcriptional regulator, LysR family protein [Paenibacillus
           vortex V453]
          Length = 296

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 113/255 (44%), Gaps = 16/255 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VAR+ SFT AAE+L+++Q +IS+ I  +E E G+ LFYR  + + LT+ G
Sbjct: 2   DIRHLEYFLEVARNQSFTKAAEKLYITQPTISKTIRNMEDEWGVTLFYRQGKRIELTDAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +++   ++    +    EL++      G LRI     +G +     + +F   YP I 
Sbjct: 62  HIMYQQAQQMVDSFQRVSAELEDLMNLKRGHLRIGLPPMVGSSFFPEVIGQFHQEYPKIT 121

Query: 124 IQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           IQLI D     + D+     D  + +  P+          V   ++    P +    R+ 
Sbjct: 122 IQLIEDGAKKVEADVESGQTDIGVAV-LPVNEEVFHYYSFVKEKLNLLVHPSHRLAGRDH 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCV 236
           +++ EL +   + F        EDF     + R       EPR+   + + +  I     
Sbjct: 181 VNLNELAEEAFVLF-------REDFTLHDRIIRECISAGFEPRV-VYESSQWDLISGMVA 232

Query: 237 LGSGIALLPDYIVKD 251
              GIALLP+ I K+
Sbjct: 233 ANLGIALLPETICKE 247


>gi|313498848|gb|ADR60214.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 305

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 11/146 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W  L VF   AR  SFT  AE+LH++  ++S+Q+  LE  +G +LF R ARG+ L+ +
Sbjct: 2   FVW--LHVFACAARHLSFTRCAEELHITPGAVSQQMRQLEERLGYRLFLRRARGVELSAE 59

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +  +E Y  +E   + L    ++  G LR+ +        L   L  F   YPDI
Sbjct: 60  GQRLAQTVAEAYGSIEAELLRLDAGEIR--GTLRVRSIPSFLAKWLTPRLPRFQQRYPDI 117

Query: 123 QIQLILDNK-------DIDISMDYAD 141
           +++L+ ++        D D+++D  D
Sbjct: 118 ELRLVAEDSAQALTPGDFDLAIDLND 143


>gi|260759774|ref|ZP_05872122.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|261750598|ref|ZP_05994307.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|265985241|ref|ZP_06097976.1| transcriptional regulator [Brucella sp. 83/13]
 gi|260670092|gb|EEX57032.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|261740351|gb|EEY28277.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|264663833|gb|EEZ34094.1| transcriptional regulator [Brucella sp. 83/13]
          Length = 304

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 23/288 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 4   DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    +S + +    IAT    G   L   + +F+  +P I 
Sbjct: 64  RKFLPEVRRLLNQTEDTMLRAM-ASAQSTSSFSIATLPTFGTRWLMPRIPDFVEKHPGIA 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE 179
           + +   +   D      D AI   +P+ + +    L    +V +     A+P  LK  R 
Sbjct: 123 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHATCTFLCSEVIVPV-----ASPSLLKT-RR 176

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S +EL+   L+      PK    +     V+   G+      +   +  ++   + G 
Sbjct: 177 PASPEELENEPLLHLATR-PKMWAQWFESCGVE---GQSAYRGHRFEQFSMVIGAALAGL 232

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G ALLP Y+++    +  LV + E  +      Y   PE     GKL+
Sbjct: 233 GFALLPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPE-----GKLE 275


>gi|184159456|ref|YP_001847795.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|183211050|gb|ACC58448.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
          Length = 244

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 96/184 (52%), Gaps = 1/184 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F V      F+ AA++L+L +S+IS++++ LE ++G+ L +R +R   L+E G   ++ 
Sbjct: 12  LFVVAVEHQGFSAAAKRLNLPKSTISKRVAILEKKLGLTLIHRSSRSFVLSEAGKLFYQH 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 +    +  L     +PSG +R++ ++ + Q LL   L E    YP + +Q+ + 
Sbjct: 72  AKNAVDEFRYAEENLLIQQQEPSGVVRLSASVPIAQYLLSDCLPELAERYPKLLLQVEVT 131

Query: 130 NKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D+  +  D  IR   +P+  S LIQR L    + A AAP YL       + ++L K
Sbjct: 132 DRYVDVMSENFDIVIRSHFQPLPDSGLIQRVLKNDKIIAVAAPAYLMKSSPIHTPEDLLK 191

Query: 189 HNLI 192
           H  I
Sbjct: 192 HEGI 195


>gi|217976575|ref|YP_002360722.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
 gi|217501951|gb|ACK49360.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 298

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 137/294 (46%), Gaps = 22/294 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +R F  VAR GS   AA +L ++ S++ R+I+ LE  +G ++F +   G  LT  
Sbjct: 2   IDWDDVRYFLAVARGGSVRAAAGRLGVNHSTVLRRIAQLEERLGAQMFEKLPSGYRLTAA 61

Query: 63  GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G ++  + +++    H+LE T++  ++ SV+  G LR+     L  +LL  +  +F  L+
Sbjct: 62  GEEVLELANQMEASSHQLE-TRVFGRDQSVR--GLLRVTLAPPLATHLLMPDFADFTRLH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-- 177
           PDI+++++   +  +++   AD A+R+        +  RK + +++H    P        
Sbjct: 119 PDIEMEILSSGELANLTNREADVALRV--------VYDRKTLPLNLHGLKGPELFGGVYI 170

Query: 178 -REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            R+ L+       + I +  +    + D+     V    G P  +       +++ Q   
Sbjct: 171 SRDRLAAWRAGAPDPIRWIVISIHGIPDWASEGEVG-ATGVPFRTTDAEAQIVAVRQ--- 226

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+  LP +I   +P LVR     +    TV+       + T +++ F  F+
Sbjct: 227 -GIGMTTLPCFIGDADPLLVRAPRADLHMYGTVWLLTQGETRKTERVRIFTEFV 279


>gi|78061571|ref|YP_371479.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969456|gb|ABB10835.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 326

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 96/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V  SGSF  AAE+L +++S++ + ++ LE  +G +L  R  R  +LT+ G  
Sbjct: 31  DGVTTFVQVVESGSFALAAERLDMTRSAVGKAVARLEKRLGARLLQRTTRSQSLTDDGQA 90

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +LE  + +L     +P GKLR++  +  G + +   + +    YP ++I 
Sbjct: 91  YYDRCVRALAELEAAEADLDCGRNEPRGKLRLSVPLAFGHHCVTPIVLDLARTYPHLRID 150

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P ++ +
Sbjct: 151 VSITDRFVDLVEEGIDLAVRIGTLADSTSLAVRRLGTQYGSLGAAPSYLARYGMPKTLDD 210

Query: 186 LDKHNLITF 194
           L  H  I +
Sbjct: 211 LKDHRTIAY 219


>gi|71737160|ref|YP_276743.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257482319|ref|ZP_05636360.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289627125|ref|ZP_06460079.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647319|ref|ZP_06478662.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298489134|ref|ZP_07007155.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557713|gb|AAZ36924.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298156334|gb|EFH97433.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322358|gb|EFW78452.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330744|gb|EFW86719.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330865979|gb|EGH00688.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330881108|gb|EGH15257.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|331009848|gb|EGH89904.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 307

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 4/197 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + +S +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDMSAAVASAALKRIERQLGARLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  L  S  +  G L+++   DLG+N+L   L EF   +P + +
Sbjct: 64  GFLEYARAALGSLEEGRRLLASSQDRCEGVLQLSAPSDLGRNVLLPWLDEFQQQHPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSL+   ++  +     AAP YL+   EP  +
Sbjct: 124 RLLLGDRIADLFRQPVDVALRYGEP-EDSSLVALPVLPDNRRVLCAAPSYLQRHGEPQQV 182

Query: 184 QELDKHNLITF--GDLI 198
           ++L +HN + F  GD +
Sbjct: 183 EQLAQHNCLLFMLGDRV 199


>gi|84387180|ref|ZP_00990202.1| transcriptional regulator [Vibrio splendidus 12B01]
 gi|84378041|gb|EAP94902.1| transcriptional regulator [Vibrio splendidus 12B01]
          Length = 297

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 135/285 (47%), Gaps = 10/285 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  +   GS + AAE L LS++ ++R +  LE  +  +L +R  R L+LT  G +
Sbjct: 5   EAMNVFVTIVERGSLSAAAEHLELSRTKVTRYLGELENWMDTRLLHRTTRSLSLTSAGKE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              V  E+   LE +   ++  S +   G+LRI  +  +  + L   +  F+  +P++ I
Sbjct: 65  TLEVARELL-ALEASLAGIRNQSREHLKGQLRITASYSIVDSFLMDVIGRFIDKWPEVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++  ++ +++     D AIR+   + + +++ ++L        A+P YLK    P + Q
Sbjct: 124 DIVSTDQTVNLVESRIDLAIRITNEL-TPNIVAKQLGECRSVICASPQYLKEKGTPSNAQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN ++F     K    FN    ++     P    +  N+   ++   + G+GI++L
Sbjct: 183 DLAHHNCLSF-SYFGKTAWTFNGPNGLE---SVPIKGNISANTSEVLLSATLKGNGISIL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P   VK    +  LV ++ +    +  V+  Y    + T  L+AF
Sbjct: 239 PFPSVKGLIQDGLLVSLLPEWQPKTLGVHAVYGTRKQVTPLLRAF 283


>gi|146293876|ref|YP_001184300.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145565566|gb|ABP76501.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 320

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 130/290 (44%), Gaps = 28/290 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT  G +
Sbjct: 5   EAAKVFVTIVERGSMISAANALDMSRSMVTRYLSEMEDWSGARLLHRSTRSLSLTPAGEQ 64

Query: 66  L----HRVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +    HR+      +L      +  + V  P G LRI+ +  +   +L   ++++L  YP
Sbjct: 65  VLDYCHRLL-----ELANEVPAVSHAGVTIPRGLLRISCSQFMAHQILAPVVRQYLASYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              +   + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      
Sbjct: 120 QASVNFHVSSQTVDLVAERIDLAIRITNELD-PNLIARRLGECESVVCAAPSYLAARAAV 178

Query: 181 LSIQELDKHNLIT---FGDLI---------PKCMEDFNWLATVD--RPIGEPRISCLQVN 226
           L  ++L +HN +T   FGD++          K  +  N  + ++  +    P       N
Sbjct: 179 LHPEDLTQHNCLTYSYFGDVMWRFYQTDVGAKQAQALNPESKLNQGQAFNVPVDGNFSAN 238

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
             + ++   + G GIA+ P +  K   D+  LV ++ +    S  VY  Y
Sbjct: 239 DSMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFKPQSLGVYGVY 288


>gi|260550620|ref|ZP_05824829.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406331|gb|EEW99814.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 296

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT  G K
Sbjct: 5   DCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLRTTLLTRTTRQMNLTSCGEK 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++ +  +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP I+I 
Sbjct: 65  FYQHSKVILSEFEWAAYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPSIKID 124

Query: 126 LILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L + ++ +D + +  D  IR+    P  ++S I   L T   + YA P Y      P S+
Sbjct: 125 LFMTDQLLDTNNNKFDLTIRVDGSPPNLANSKI---LNTYQRYLYATPEYFNQHGLPGSL 181

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGS 239
           +EL +H  LI + D   K +          +   E   +C  V   N+   ++  C+   
Sbjct: 182 EELKEHKFLIYYQDSRHKKL-------IFQKDHKEVSFNCFPVMTCNNGELLLDMCLKNH 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+
Sbjct: 235 GIVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFL 288


>gi|254508088|ref|ZP_05120215.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219549055|gb|EED26053.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 307

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 130/289 (44%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L V   VA   S T AA  L +  ++ S  +  +E  +G +LF R  R L L+  G +
Sbjct: 4   EDLHVVLKVAEMRSITRAATALDMRTATASAAVKRVEASLGSELFIRTTRQLRLSSAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    L   +  ++E   +  G++RI+ + DLG+N++   L EFL  +P + ++
Sbjct: 64  YIPECEKALELLSQAKQLMREEQGEIDGEVRISLSSDLGRNVVVPWLDEFLDAHPKLSLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L + ++D+  D  D A+R   P   S+L   K+  I     A+P YL    EP    +
Sbjct: 124 THLSDSNVDLYRDGVDIALRYGSPTD-SNLYGFKICDIRKVLCASPEYLAKHGEPKHPDD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L  HN + +   +   ++D  W    D    + ++S  +  N    + ++CV G GIA +
Sbjct: 183 LKHHNGLFYQ--LRDVLKD-EWEFVKDGQEIKVKMSGNRASNDADLVRRWCVAGKGIA-I 238

Query: 245 PDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y+   N     N+V IM D    S  ++   P     T  ++  R+ 
Sbjct: 239 KSYLDMSNDLLAGNVVEIMSDYQPTSSELWLVCPSRRSITPTVRLLRDM 287


>gi|150397448|ref|YP_001327915.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150028963|gb|ABR61080.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 320

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 119/248 (47%), Gaps = 7/248 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  V   G F+ AA +L ++ S++S+ +  LE+ +G++L  R  R ++LT +G+ 
Sbjct: 5   EAMAVFLAVVEEGDFSAAARRLRMTPSAVSKIVGRLESRLGVRLLQRSTRSISLTAEGNS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +E  ++ +Q  + +P G+LR++     G  L+   L  F+  +P I+++
Sbjct: 65  YSESVRRILGDMEEAELAIQPGA-EPRGRLRVSLPSAFGHRLIVPMLPAFIGRHPAIELE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D+    A  A+R+      S+L+ R+L         AP Y +    P+   +
Sbjct: 124 LDFTDAIVDLVNGDAHVAVRV-AAQGDSTLVTRRLAPNRRVICGAPDYFERHGVPMRPDD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH  +         + +F+  A   R +   RI S ++ NS  ++ +  + G GI  L
Sbjct: 183 LLKHICLGISSRGGLNLWEFDE-AGGRRSM---RIRSSIEANSTEALRRLALAGMGIVRL 238

Query: 245 PDYIVKDN 252
            + +V  +
Sbjct: 239 SEMLVGQD 246


>gi|71733343|ref|YP_272993.1| fused ISPsy20 transposase IstB/transcriptional regulator LysR
           family protein [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71553896|gb|AAZ33107.1| ISPsy20, transposase IstB, transcriptional regulator, LysR family -
           fusion [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 840

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 13/273 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 510 LNWDDLKFFLEVARTRKVSSAARRLAVDCTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 569

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 570 EGQRLLGYAESIESTLHMAYEQVSGSSVALSGHIRMGCTEGFGSFFITPQLSHFLDSYPS 629

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +     
Sbjct: 630 ISLDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQAYLDSHPAIE 688

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVLGS 239
              +L  H  I++ D +    E   +L+ +  P  +      Q+ S   I QY   + G 
Sbjct: 689 QKADLSGHVFISYVDDLAFSSE-LLYLSNL-LPNAQA-----QLRSTSVIAQYTAALQGR 741

Query: 240 GIALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
            +A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 742 ALAILPCFLAAQDPRLLPVLAEEVNITRQFWMY 774


>gi|71064631|ref|YP_263358.1| LysR family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71037616|gb|AAZ17924.1| transcriptional regulator, LysR family [Psychrobacter arcticus
           273-4]
          Length = 311

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 109/248 (43%), Gaps = 9/248 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  + SF+  A +  +S S +SR I  LE  +G +LFYR+ R +T TE G    
Sbjct: 12  LLFFIEVFDAQSFSVVARKEGVSASKVSRIIRQLEDSLGQQLFYRNTRAVTPTEAGRVFM 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   +   Q ELQ+ +++P G +RI   +  GQ  +   L +    YP +QI L 
Sbjct: 72  RYAKSMTESMSAAQQELQDRTLEPGGLIRINAPVFFGQRHIAPWLPQLSAQYPKLQIDLS 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  ID      D   R+   +  S+   R       H  A+P Y+    +     +L 
Sbjct: 132 LTDDFIDPHHYATDVIFRIGT-LNDSAFHARIFGEQTYHLAASPSYISTHGKLQVPADLT 190

Query: 188 KHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
            H  + + G   P       WL   +     P +  + L  N+  S++   + G GI L 
Sbjct: 191 HHKCLLYKGSTGPN-----RWLFKTESEDWTPFLAPALLMSNNAESLLVSALKGMGIVLF 245

Query: 245 PDYIVKDN 252
           PD+++ ++
Sbjct: 246 PDWLIGEH 253


>gi|218676880|ref|YP_002395699.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
 gi|218325148|emb|CAV27031.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 310

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 5/239 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+V   VA   S T AA  L +  ++ S  +  +E  +G +LF R  R L L+  G +
Sbjct: 4   EDLQVILKVAEFRSITAAATNLDMRTATASAAVKRVEAALGAELFVRTTRHLRLSSAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    LE  ++ ++E      G++RIA + DLG+NL+   L EFLL YP   ++
Sbjct: 64  YLPECEQALKILEQAKLSMREELGILDGEIRIALSSDLGRNLITPWLDEFLLEYPKASLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + + +ID   D  D A+R   P   +++   K+  +     AAP YL     P    +
Sbjct: 124 TSISDSNIDFYRDSVDMALRYGSPTD-ANMYGFKICDVPRILCAAPEYLAEMGTPKHPSD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIAL 243
           L +HN + +   +   ++D  W+    +   + ++   +  N    + ++CV G G+A+
Sbjct: 183 LAQHNGLLYQ--LHDMLQD-EWVFNDGKQDHKVKLKGNRASNDADLVRRWCVAGKGVAI 238


>gi|126737919|ref|ZP_01753649.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126721312|gb|EBA18016.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 298

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 132/298 (44%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD ++VF  VAR  S + A   L +  +++ R+I+  E  +   LF +  +G  L+
Sbjct: 1   MDPQWDDMKVFLAVAREASLSGAGRILKMDPATVGRRIARFEGALDTPLFVKSPQGYALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L          +      L   S   SG++RI         +L     E     P
Sbjct: 61  AAGDRLLVHAEAAEQAMRAGAEALTGPSDTLSGQIRIGAPDGSANYILPQVCAEISEQNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ IQ++   + I++S   AD A+ +  P     L+Q K+    +H  A+ HYL+     
Sbjct: 121 DLDIQIVALPRVINLSRREADMAVTVSAPSAGQLLVQ-KICDYQLHLVASRHYLRAKGAI 179

Query: 181 LSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            ++++L  H +I +   IP  +  ++ ++L+     +G  R++ L  NS    ++    G
Sbjct: 180 ETLEDLKGHKMIGY---IPDMIFDKELDYLSD----LGIERVA-LASNSVSVQIKMAAQG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + + +  D+ +  +  L +I+ D ++ S + Y    +  + + +L  F   +    RD
Sbjct: 232 TALCVAHDFTLPSHRMLRKILTDKLSLSRSFYLVRHQGDQRSERLNRFAQALAKGIRD 289


>gi|73541173|ref|YP_295693.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72118586|gb|AAZ60849.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 304

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 132/298 (44%), Gaps = 13/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  V  SG FT AA +L LS +++S  +  LE  +G++L  R  R ++LTE G + 
Sbjct: 6   SLTAFVRVVESGGFTAAARRLDLSTTTVSNHVQALEDSLGVRLLNRTTRHVSLTEIGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   S +  +L           V P G+LR+     L +  +   +  FL  YP++ +  
Sbjct: 66  YERCSHILQELAEADEITSALQVTPRGRLRLRCHQSLDR-FIAPVVTRFLGNYPEVSLDF 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             D   ID   +  D +I    P   S+LI+R L   H     AP YL+    P S  +L
Sbjct: 125 ETDVM-IDPVREGFDLSIMPASP-PDSTLIRRTLAKWHYLLCCAPAYLETHSVPHSPADL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA-LLP 245
             HN + +   I +   +F+++     P+   R+S   V + +++M+          L P
Sbjct: 183 VDHNCLLYAYSIFR--NEFHFVDPAGNPMST-RVSGNMVTASITVMRAAAAAGLGLWLCP 239

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
            ++V D   +  LV ++ D  T    +   YP   + + K++   + +   F + + W
Sbjct: 240 PFLVSDLLASGALVPLLPDYRTQELEIVALYPHRRQVSTKVRLLLDMLVDRFAEEQRW 297


>gi|62317267|ref|YP_223120.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269248|ref|YP_418539.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus
           2308]
 gi|189022528|ref|YP_001932269.1| transcriptional regulator, LysR family [Brucella abortus S19]
 gi|237816828|ref|ZP_04595820.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|254690773|ref|ZP_05154027.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 6 str. 870]
 gi|254695921|ref|ZP_05157749.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|254698553|ref|ZP_05160381.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254703227|ref|ZP_05165055.1| transcriptional regulator, LysR family protein [Brucella suis bv. 3
           str. 686]
 gi|254732001|ref|ZP_05190579.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 4 str. 292]
 gi|256255957|ref|ZP_05461493.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 9 str. C68]
 gi|260544506|ref|ZP_05820327.1| transcriptional regulator [Brucella abortus NCTC 8038]
 gi|260756346|ref|ZP_05868694.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260763013|ref|ZP_05875345.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882171|ref|ZP_05893785.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|261216348|ref|ZP_05930629.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261753856|ref|ZP_05997565.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|297249316|ref|ZP_06933017.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196]
 gi|62197460|gb|AAX75759.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82939522|emb|CAJ12495.1| Bacterial regulatory protein LysR, HTH motif:Immunoglobulin/major
           histocompatibility complex:LysR substrate binding domain
           [Brucella melitensis biovar Abortus 2308]
 gi|189021102|gb|ACD73823.1| transcriptional regulator, LysR family [Brucella abortus S19]
 gi|237787641|gb|EEP61857.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|260097777|gb|EEW81651.1| transcriptional regulator [Brucella abortus NCTC 8038]
 gi|260673434|gb|EEX60255.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676454|gb|EEX63275.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260871699|gb|EEX78768.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|260917955|gb|EEX84816.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261743609|gb|EEY31535.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|297173185|gb|EFH32549.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196]
          Length = 310

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 125/280 (44%), Gaps = 18/280 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    +S + +    IAT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAM-ASAQSTSSFSIATLPTFGTRWLMPRIPDFVEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE 179
           + +   +   D      D AI   +P+ + +    L    +V +     A+P  LK  R 
Sbjct: 129 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHATCTFLCSEVIVPV-----ASPSLLKT-RR 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S +EL+   L+      PK    +     V+   G+      +   +  ++   + G 
Sbjct: 183 PASPEELENEPLLHLATR-PKMWAQWFESCGVE---GQSAYRGHRFEQFSMVIGAALAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           G ALLP Y+++    +  LV + E  +      Y   PE 
Sbjct: 239 GFALLPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEG 278


>gi|294651050|ref|ZP_06728389.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823063|gb|EFF81927.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 262

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 3/210 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA   SFT AA+   L+ +++SR I+ LE  +  +LF R  R + LT  G    
Sbjct: 13  VELFCAVAEYKSFTQAAKIAGLTPAAVSRSIARLEQRLNTQLFVRSTRQVRLTHAGEIYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +   ++   +  L+  S + +G++RI+     G   +   +  F   YP+IQI L 
Sbjct: 73  QQCQQGLTQIIEAEQLLRNQSQQLNGRIRISLPTPYGHYRVLPLIPIFKQKYPNIQIDLQ 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L NK++D   +  D AIR R   + S+LI R L    +   AA  Y+ +   P  I  LD
Sbjct: 133 LTNKNVDFIAEGFDLAIRGRY-FKDSNLIVRTLEHAELVVVAAASYIDSYTIPTDIAALD 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE 217
           +H  + F  ++P   +   WL  V+  I E
Sbjct: 192 QHECLQF--ILPSTGKSVPWLFKVNNQIHE 219


>gi|167035241|ref|YP_001670472.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861729|gb|ABZ00137.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 298

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 126/289 (43%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V    SF  AA +L +S ++++R +S LE ++G+KL  R  R + LTE G +  
Sbjct: 7   MKVFVAVGELESFAAAARRLDISPAAVTRAVSALEDQLGVKLLLRTTRSVRLTEAGGRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +   +          +  P G L +   I  G+  +   +  +L  YP++ +   
Sbjct: 67  EDTRHILASIHEANEAAAGINATPKGDLAVTAPILFGKKFVMPCIVRYLQQYPEVDVSAY 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D A+R+  P+  S L   ++  +     A+P YL     P    +L 
Sbjct: 127 FLDRVVNMVEEGMDVAVRI-GPLPDSGLKALRVGRVRRMLCASPDYLARHGVPEHPSDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI---GEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H +I   +L P+    F      D P     +PR   L V S    +     G GIA L
Sbjct: 186 GHAVIGTTNLSPRAGWRFG---VTDEPTLVRMKPR---LTVTSNDGAIAAASGGLGIARL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y V +   +  L  I+ +     + ++  + E+   + K++AF + +
Sbjct: 240 LSYQVAEELASGQLQVILAEYEEAPWPIHVLHRESKYGSAKVRAFIDML 288


>gi|261344698|ref|ZP_05972342.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
 gi|282567618|gb|EFB73153.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
          Length = 301

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 128/284 (45%), Gaps = 18/284 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  +  V   G F+ A   L + +S +SR+I+ LE ++ + L YR  R   +T
Sbjct: 1   MQYDLNDLYYYVKVVECGGFSQAGLALGIPKSKLSRRIADLEQKLNVSLIYRSTRQFHVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++    V  +       +      P G ++++  + L Q  LQ  L +F++ YP
Sbjct: 61  EIGQVFYQQCKNVVDEANIAHELICSVQTHPKGTIKLSCPVALLQVYLQDLLIDFMVKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI +Q++  N+ +D+  +  D A+R+R  P+  S L+ + L        A+P       E
Sbjct: 121 DIDVQILAVNRPVDVISEGLDLALRVRSLPLDDSGLMMKVLGYSRRVLVASPSLFIEKGE 180

Query: 180 PLSIQELDKHNLITFGD------LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
           P   ++L  + ++   +      L  K  +D ++          P+++   V   L++  
Sbjct: 181 PTEPEQLVNYPMLGNTEHSQRYTLTLKNNDDLSFTQHF-----TPKLATTDV---LTLYH 232

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP 274
             + G GIA LP  +V+       LV ++ +   P   ++  YP
Sbjct: 233 AALKGVGIARLPLGVVEKELQTGALVEVLPEWKFPEDIIHAVYP 276


>gi|221068349|ref|ZP_03544454.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713372|gb|EED68740.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 309

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 134/288 (46%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  V  +GSFT AA++L ++++ +S+Q++ LE E    L  R  R +  T+ G   
Sbjct: 18  RLAYFAAVVETGSFTAAADRLGITKAVVSQQVARLEREFRTTLLTRTTRKVVPTDAGRLF 77

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++  + +  +      EL E + +PSG LR+   +D G   +   + EF   YP  ++  
Sbjct: 78  YQRCASILKEAGDAFDELGEVAAEPSGILRLTAALDYGITAVVPAITEFTRRYPQCKVDA 137

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  ++ +D+     + AIR+   +   ++  R++ +      AAP   +   +    Q +
Sbjct: 138 VFSDQSLDLMSGQVELAIRVGW-LSDLNVQARQIGSFRQLLVAAPSMRRQVGQLKQPQHI 196

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLP 245
                +    L   C   F+      + +   P IS   +++ L + +    G+G+++LP
Sbjct: 197 GALPFVANTALRDPCSWRFSRGELEQQSVTVHPVIS---LDATLGVREAVRQGAGLSVLP 253

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D+ V D   N  L++++     PS  ++  +P A     K+KAF + +
Sbjct: 254 DFAVADDLKNGTLIQVLPRWSLPSGGIHAVFPTARFRPAKVKAFVDLM 301


>gi|114704437|ref|ZP_01437345.1| putative transcriptional regulator (LysR family) protein
           [Fulvimarina pelagi HTCC2506]
 gi|114539222|gb|EAU42342.1| putative transcriptional regulator (LysR family) protein
           [Fulvimarina pelagi HTCC2506]
          Length = 311

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 121/286 (42%), Gaps = 28/286 (9%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
           R+GSFT AA  L LSQS++S+ +S  E    ++L  R  R +  TE G +L      V  
Sbjct: 17  RAGSFTKAARTLGLSQSALSQIVSRAEARFELRLLTRTTRSVAPTEAGERLIAALGPVLD 76

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
            L+     L++    PSG +R+         +L+  L   L  +P++ +++ LD    D+
Sbjct: 77  DLDAVVASLRDLRDNPSGTIRVTAVEHAVWTILRPALATILSDHPNLNVEVTLDYGIADV 136

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI--- 192
             D  D  IRL   ++   +  R    I M    +P Y     +PL   +L  H  I   
Sbjct: 137 VADRFDAGIRLGGEVEKDMVAVRVGPDIPMAIVGSPAYFDRHPQPLEPFDLRHHRAINLR 196

Query: 193 --TFGDLIP-KCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPD 246
             T G + P + ME             E R+     LQ  +   I+   + G G+A +P 
Sbjct: 197 LPTSGTVNPWRMMESGR----------ESRVRVEGQLQFGALAPIVDAALDGLGLAYVPR 246

Query: 247 YIVKDNP----NLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAF 286
            +V D P     L+ +++   T  P + +Y  YP     +   + F
Sbjct: 247 DMV-DEPLRTRRLISVLDSFTTDLPGYHLY--YPSRRHASAGFRLF 289


>gi|134293322|ref|YP_001117058.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136479|gb|ABO57593.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 324

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 132/292 (45%), Gaps = 15/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF+  A+++ +S S+++R+I+ +E  +G+ L +R    +TLTE G    
Sbjct: 16  MRAFVRVVEMGSFSAVAKEMRVSTSTVARKITAIEDALGVALLHRSTHSVTLTEAGHIYL 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+ + 
Sbjct: 76  ERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQLDVR 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D  I   +    + ++ R L        A P YL  C  P + Q+L 
Sbjct: 136 LTDNHNDLVAGGFDLDIHEGENYLDNLVVHR-LSRNDSVLCATPGYLDRCGRPATPQDLQ 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN + +  + P     +  +   +R    P  + +  +S L +   C  G GIA    +
Sbjct: 195 QHNCLRY--VHPDGDPRWELVRGDERHSVLPAGNLVTDHSELLLDATCA-GLGIAEFEIW 251

Query: 248 IVKDNPNLVRIMEDVITPSFT---------VYFCYPEALKNTGKLKAFRNFI 290
           +V+D     R+  + + P +          +Y  Y    +++ KL+  ++F+
Sbjct: 252 LVRDLLASGRL--EAVLPRYRLHNKLTGDYIYIAYLANRRSSAKLRVLKDFL 301


>gi|330943618|gb|EGH45950.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 308

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 4/201 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D L++F   A  GS + AA  + +S +  S  +  +E ++G +L  R  R L LT
Sbjct: 1   MMLRFDDLQLFVRAADLGSLSAAARVMDMSAAVASAALKRIERQLGTRLLARSTRSLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G             LE  +  L  S  +  G L+++   DLG+N+L   L EF   +P
Sbjct: 61  AEGEGFLEYARAALGSLEEGRRLLASSQDRCEGVLQLSAPSDLGRNVLLPWLDEFHQQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179
            + ++L+L ++  D+     D A+R  +P + SSL+   ++  +     AAP YL+   E
Sbjct: 121 QLTVRLLLGDRIADLFRQPVDVALRYGEP-EDSSLVALPVLPDNRRVLCAAPSYLQRHGE 179

Query: 180 PLSIQELDKHNLITF--GDLI 198
           P  +++L +HN + F  GD +
Sbjct: 180 PHQVEQLAQHNCLLFMLGDRV 200


>gi|330863261|emb|CBX73387.1| hypothetical protein YEW_LN49260 [Yersinia enterocolitica W22703]
          Length = 200

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 1/175 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V  S SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+
Sbjct: 4   ALDFNTLKVFIAVVESESFVGASKVLEMPTSNVSRCISQLEEKLNLQLIERSTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   YPD
Sbjct: 64  AGHLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSIVADFACQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           +++  + +    +   D  D AI + R  +  S  I R L+TI     AAP  ++
Sbjct: 124 LEVSCVTNLSGFESLRDDLDLAIIITRGQMDDSDYIARHLLTIPCTIVAAPSIIQ 178


>gi|329923463|ref|ZP_08278945.1| LysR substrate binding domain protein [Paenibacillus sp. HGF5]
 gi|328941355|gb|EGG37649.1| LysR substrate binding domain protein [Paenibacillus sp. HGF5]
          Length = 296

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 16/255 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VAR+ SFT AAE+L+++Q +IS+ I  +E E G+ LFYR  + + LT+ G
Sbjct: 2   DIRHLEYFLEVARNQSFTKAAEKLYITQPTISKTIRNMEDEWGVTLFYRQGKRIELTDAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +++   ++    +    EL++      G LRI     +G +     + +F   YP I 
Sbjct: 62  QIMYQQAQQMVESFQRVSAELEDLMNLKRGHLRIGLPPMVGSSFFPEVIGQFHREYPKIT 121

Query: 124 IQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           IQLI D     + D+     D  + +  P+          V   ++    P +    RE 
Sbjct: 122 IQLIEDGAKKVEADVESGQTDIGVAVL-PVNEDVFHYYSFVKEKLNLLLHPSHRLAGREH 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCV 236
           + + EL     + F        EDF     + R       EPR+   + + +  I     
Sbjct: 181 VHLSELADEAFVLF-------REDFTLHDRIIRECVSAGFEPRV-VYESSQWDLISGMVA 232

Query: 237 LGSGIALLPDYIVKD 251
              GIALLP+ I K+
Sbjct: 233 ANLGIALLPETICKE 247


>gi|261409776|ref|YP_003246017.1| LysR family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261286239|gb|ACX68210.1| transcriptional regulator, LysR family [Paenibacillus sp. Y412MC10]
          Length = 296

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 16/255 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VAR+ SFT AAE+L+++Q +IS+ I  +E E G+ LFYR  + + LT+ G
Sbjct: 2   DIRHLEYFLEVARNQSFTKAAEKLYITQPTISKTIRNMEDEWGVTLFYRQGKRIELTDAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +++   ++    +    EL++      G LRI     +G +     + +F   YP I 
Sbjct: 62  QIMYQQAQQMVESFQRVSAELEDLMNLKRGHLRIGLPPMVGSSFFPEVIGQFHREYPKIT 121

Query: 124 IQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           IQLI D     + D+     D  + +  P+          V   ++    P +    RE 
Sbjct: 122 IQLIEDGAKKVEADVESGQTDIGVAV-LPVNEDVFHYYSFVKEKLNLLLHPSHRLAGREH 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCV 236
           + + EL     + F        EDF     + R       EPR+   + + +  I     
Sbjct: 181 VHLSELADEAFVLF-------REDFTLHDRIIRECVSAGFEPRV-VYESSQWDLISGMVA 232

Query: 237 LGSGIALLPDYIVKD 251
              GIALLP+ I K+
Sbjct: 233 ANLGIALLPETICKE 247


>gi|170737142|ref|YP_001778402.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819330|gb|ACA93912.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 298

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 124/304 (40%), Gaps = 34/304 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F   A+  +F++AA +L L+ S++SRQI+ LE   G+KLF R  RGLTLT  G   
Sbjct: 10  ELHAFATSAKYLNFSYAARELGLTPSAVSRQIANLEALFGVKLFVREGRGLTLTRAGQVY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H        ++    IEL  S+ + S  L IA+        L   L  FL   P + +  
Sbjct: 70  HARVVGPLREIGNASIELL-SARENSDLLTIASVPTFTTKWLLPRLTRFLAAAPGVTLSF 128

Query: 127 ILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
                  D+     D AIR      + ++S  L  R  V +    +A  H L    +  +
Sbjct: 129 RRHLAPGDVFPFGLDAAIRYGDGGWEGVRSDYLGGRTFVPVCSREFADRHALHGPADAAA 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYC 235
              L                 +  W A  +R        +  PR        Y  ++Q  
Sbjct: 189 APRLVHEQ------------AEIAWSAWAERHRATQMNALAGPRF-----EQYSVLIQAA 231

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP----SFTVYFCY-PEALKNTGKLKAFRNFI 290
             G GIAL+P +++ DN     ++E    P    +   Y CY PE L  +  L+ FR ++
Sbjct: 232 QAGLGIALVPRFLILDNLAAGTLVEPFDAPVDVDAQGHYLCYAPERLDTSEALRRFREWM 291

Query: 291 FLKA 294
             +A
Sbjct: 292 LDEA 295


>gi|90413271|ref|ZP_01221265.1| hypothetical D-serine deaminase activator [Photobacterium profundum
           3TCK]
 gi|90325672|gb|EAS42135.1| hypothetical D-serine deaminase activator [Photobacterium profundum
           3TCK]
          Length = 306

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 131/293 (44%), Gaps = 20/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F + A   SFT AAE L L+QS++S +I  LE  +G+KLF R  R + LT++G +L 
Sbjct: 14  LHCFLIAADQMSFTRAAEVLCLTQSAVSHKIKNLEDSLGVKLFIRQPRKVMLTDEGKRLK 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V ++ +  +     +L+  +++ SG   ++      Q  L   +K F+  YP ++  L 
Sbjct: 74  AVVAQNFGDIAHEIRDLK--TLELSGDFNVSAPPTFAQTWLMPRIKSFIDKYPALRFHLR 131

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             N  ID   +  DCAI         + S  L+   ++ +  H YA  + L +  + L +
Sbjct: 132 TRNDLIDFQTEIFDCAIYFGHGKYAGLHSEKLMDESMLPVCTHEYALRYNLYDRPDNLVM 191

Query: 184 QELDKHNLITFGDLIPKCMEDFN--WLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
                   +   D  P      N  W     R  I  P + C    S L+ +Q    G G
Sbjct: 192 -------CMLLHDAAPWARAGRNDEWQYWAQRQGIILPEVGCTFDRSDLA-LQAAERGIG 243

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+     V +   N  LV   +  +    + Y    + +K++ ++KAF++++
Sbjct: 244 VAMGRMSFVAEQLANERLVIPFDMPVKSPLSYYVVCRQDMKSSPRVKAFQDWL 296


>gi|260778215|ref|ZP_05887108.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606228|gb|EEX32513.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 310

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 139/301 (46%), Gaps = 20/301 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L  F  +   G+ + AA  L +S +S+S  +  LE  VG  LF R  R ++ TE G 
Sbjct: 10  YNQLISFKTIYEEGNISKAARLLGISSASVSNSLKVLEKNVGEPLFNRTTRAISPTEVGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +L+ +       L T  IEL  + +  PSG L +    D+    L+  L +F L +P IQ
Sbjct: 70  RLYELIHPSVDDL-TNAIELVCDHNKAPSGSLSLNMARDIYDVFLKDVLMDFQLQFPTIQ 128

Query: 124 IQLIL-DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT----IHMHAYAAPHYLKNCR 178
           +++ L D+ D  +   + D   R  + + + S+I ++L +      +  +A+P Y+    
Sbjct: 129 LEITLSDSFDSQVEHHF-DIGFRFGETV-NDSMIAKRLNSGEQRTELALFASPDYVSRFG 186

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQ 233
           EP S+ EL +H++I F       +       T D+      +S L  N+ +      +M 
Sbjct: 187 EPTSVDELQQHSMIQFRAPSSHKLLPIRLHKTKDK--SSELVSLLPSNTAMVVNNSKVMV 244

Query: 234 YCVL-GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            C L G GI  L D  +KD   +  LV I++       TVY  Y    + T ++  F  +
Sbjct: 245 DCALKGIGIGYLMDASIKDELSSGQLVPILKQYWCEVPTVYMYYDPENRQTRRVACFLEY 304

Query: 290 I 290
           +
Sbjct: 305 M 305


>gi|172065090|ref|YP_001815802.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997332|gb|ACB68249.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 296

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 123/291 (42%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 13  LLVFEAAARHESYTRAADELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 73  VELSGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 131

Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                ID   D  D AI +       + +  L    L+ I     AA       R P   
Sbjct: 132 SRIGGIDFHTDDLDAAITVGAGDWPGLHAHRLYNEFLIAI-ASPDAAGRRKAGQRTPAWA 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
                  L+          E F+      R   E RI    ++ S+L  +Q    G GI 
Sbjct: 191 V---GQTLLGVTSNQHAWAEWFSHFGLDHR---EMRIGPSFELTSHL--IQAVRAGMGIG 242

Query: 243 LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L+P  +V+D  + N +  + D IT   + Y  YP        L AFR ++ 
Sbjct: 243 LVPKVLVEDELSRNELVSIGDAITSQRSYYLVYPPENDTLPSLVAFREWLL 293


>gi|254249703|ref|ZP_04943023.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124876204|gb|EAY66194.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 339

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 1/179 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT 
Sbjct: 38  GYRFELMETFVRIVEAGSLSAAAVQLHTTQPTISRRLQALENSLGMRLLQRTTHTMRLTV 97

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   E+       + +L+ +  +P G LR+A     GQ      L +FL  YP 
Sbjct: 98  DGERCFKQAKELLASWAAFEADLRGAQEEPDGLLRVAVPHAFGQQRFVAPLAQFLRDYPR 157

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++ +L ++  D      DCAI++ +P     ++  +L  +     AAP  L     P
Sbjct: 158 VSVEWLLQDEVRDFVGSGIDCAIQVGEPT-DPGVVAIRLTKVPRFVVAAPSVLNGADVP 215


>gi|27367748|ref|NP_763275.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27359321|gb|AAO08265.1|AE016813_17 Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 304

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 16/250 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSF+  A++L +S SS+SR I+ LE  +  KL  R  R + L+  G ++
Sbjct: 12  EMAIFVNVVESGSFSKTAQKLGVSPSSVSRSITRLENVLEKKLLERTTRQMRLSATGQEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           + + S++ +  +      Q    + SG LRIA    L + +L   + +F+  +P + +QL
Sbjct: 72  YSLCSDMLNAAKMAVSAAQTDKSEASGSLRIAAPKALSRQVLMPLVLDFIAEHPKVALQL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            + +  ID   D  D  I++  KP +   L+ R L    +   A+P YL+    P    +
Sbjct: 132 KVADHYIDPIGDEVDVIIQITDKPTE--GLVARSLGRCRLVLCASPDYLQQQGTPNHPDD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL----SIMQYCVL-GSG 240
           L  HN +  G+  P+   D  W    D  IG  +IS     S+      I +  VL G G
Sbjct: 190 LVGHNCLCLGE-NPR---DRVW----DFTIGSRKISVNVKGSFAVNHSEIRREAVLRGLG 241

Query: 241 IALLPDYIVK 250
           I++ P++ ++
Sbjct: 242 ISVFPEFAIR 251


>gi|23500633|ref|NP_700073.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|161620959|ref|YP_001594845.1| hypothetical protein BCAN_B0925 [Brucella canis ATCC 23365]
 gi|254700107|ref|ZP_05161935.1| hypothetical protein Bsuib55_04494 [Brucella suis bv. 5 str. 513]
 gi|254720229|ref|ZP_05182040.1| hypothetical protein Bru83_11993 [Brucella sp. 83/13]
 gi|256015667|ref|YP_003105676.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|256058927|ref|ZP_05449141.1| hypothetical protein Bneo5_01031 [Brucella neotomae 5K33]
 gi|260567841|ref|ZP_05838310.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|261322867|ref|ZP_05962064.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|294853855|ref|ZP_06794527.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|306838629|ref|ZP_07471465.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|306841534|ref|ZP_07474232.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306846116|ref|ZP_07478678.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|23464276|gb|AAN34078.1| transcriptional regulator, LysR family [Brucella suis 1330]
 gi|161337770|gb|ABX64074.1| Hypothetical protein BCAN_B0925 [Brucella canis ATCC 23365]
 gi|255998327|gb|ACU50014.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260154506|gb|EEW89587.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|261298847|gb|EEY02344.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|294819510|gb|EFG36510.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|306273367|gb|EFM55228.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306288371|gb|EFM59730.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306406272|gb|EFM62515.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 310

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 125/280 (44%), Gaps = 18/280 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    +S + +    IAT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAM-ASAQSTSSFSIATLPTFGTRWLMPRIPDFVEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE 179
           + +   +   D      D AI   +P+ + +    L    +V +     A+P  LK  R 
Sbjct: 129 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHATCTFLCSEVIVPV-----ASPSLLKT-RR 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S +EL+   L+      PK    +     V+   G+      +   +  ++   + G 
Sbjct: 183 PASPEELENEPLLHLATR-PKMWAQWFESCGVE---GQSAYRGHRFEQFSMVIGAALAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           G ALLP Y+++    +  LV + E  +      Y   PE 
Sbjct: 239 GFALLPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEG 278


>gi|229030133|ref|ZP_04186195.1| Transcriptional regulator, LysR [Bacillus cereus AH1271]
 gi|228731191|gb|EEL82111.1| Transcriptional regulator, LysR [Bacillus cereus AH1271]
          Length = 300

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 138/303 (45%), Gaps = 29/303 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V +   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVTKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  NAGRILLLHSKTIFHEVEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNQLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PMQDKEIISIPLYKSELTLVVPTGHQLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI      FN+   + +PI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCHKFNF---IPKPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +Q    G GI +LP    D++   N   ++I     TP+  +   Y    KN     A R
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY---RKNKYMCAATR 285

Query: 288 NFI 290
            FI
Sbjct: 286 EFI 288


>gi|254249771|ref|ZP_04943091.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124876272|gb|EAY66262.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 297

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 122/293 (41%), Gaps = 23/293 (7%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR    F  V   G+FT AA +L +S   + + +  LE  +  +L  R  R   LT+ 
Sbjct: 2   DRLRAMETFVAVVEGGNFTEAARRLEISAVMVGKYVRELEERLAARLLERTTRRQNLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         +   +  ++     PSG LRI+  I  G  ++      F   YP +
Sbjct: 62  GRVFYEDAKRALEHMRIAETSVERLRASPSGTLRISAPITFGACVIAPLAATFRQRYPLV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+++D+  +  D AIR+ + +  + L+ R L    M   A+P YL     P +
Sbjct: 122 RVELELSNRNVDLIDEGFDLAIRIGE-LGDADLVARPLTGYRMVICASPGYLAQYGRPQT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE------PRISCLQVNSYLSIMQYCV 236
            Q+L  H+          C+    W +     +G+         S    N    +    +
Sbjct: 181 PQDLSAHH----------CLFHTVWNSRNGWKLGDDDGTHFSAESGFTCNDGNGLRMAAI 230

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+G+ L P+ +V  +     LV++++        V+  Y +  +   KL  F
Sbjct: 231 AGAGLLLQPEVLVSHDLASGALVQVLQGYEPKPHPVHIVYRQDRRPLPKLTRF 283


>gi|146305108|ref|YP_001185573.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145573309|gb|ABP82841.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 302

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 143/302 (47%), Gaps = 25/302 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++  F  V  SGS + AAEQL  + S +SR +  LE ++ + L  R  R L LT
Sbjct: 1   MKISLEEMLAFVCVVDSGSISAAAEQLEQTASGVSRALGRLEEKLAVTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E  + ++      P+G+LRI T      +++   + +F  LYP
Sbjct: 61  EEGEVFLVQARRILDSVEEAEEQMAVRRQAPAGRLRINTASPFMLHVIVPLIGDFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D++ ID+     D AIR+   +  SSL  R L        A+P YL    +P
Sbjct: 121 QIELELNSDDRIIDLLERRTDLAIRIGH-LPDSSLHARPLCHSRRRVLASPDYLARHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RIS-CLQVNSYLSIMQYCVLG 238
           +  +EL  H+LI F +  P  + ++     +   +GE  RI+  L V+S  ++ +  + G
Sbjct: 180 MRTEELAGHSLIGFTE--PDSLNEW----PLRHALGERWRITPSLHVSSGDTVRELALAG 233

Query: 239 SGIALLPDYIVKDNPNLVRIME-------DVITPSFTVYFCYPEALKNTG---KLKAFRN 288
            G+  L D++   +    R++E       +V  P   VY+      +NT    ++  F +
Sbjct: 234 QGLVCLSDFMTDVDRASGRLVEVLAEQRVEVRQPINAVYY------RNTALASRITCFLD 287

Query: 289 FI 290
           F+
Sbjct: 288 FL 289


>gi|150376758|ref|YP_001313354.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150031305|gb|ABR63421.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 315

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 132/300 (44%), Gaps = 19/300 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +RVF  V   G+ + A     ++ +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNVRVFVRVVELGTLSAAGRDQRVTPAVASNRIKELERHMGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   +   +  + + S  P G L+I   + +G+ L+   + EF   YP
Sbjct: 60  EHGRVFYEGAVKILEAVNEAESAIADLSRNPKGALKITAPLGIGRRLIAPGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   ++ S+L  R ++        +P Y +    P
Sbjct: 120 DIEVRLRLSDHNVDILAEGVDIAFKL-GILEDSNLRMRGIMNCDRVLCGSPRYFERRGTP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQ 233
            S  +L    H+ +      P   E + W  T+  P G  +        Y S     + Q
Sbjct: 179 SSPDDLLSQSHDCLLL--RYPGSKE-YYW--TLQTPDGVRKFEV--AGPYDSDDGDVLTQ 231

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + G GI   P + VK   D   LV I+E+       +   YP       K++   +F+
Sbjct: 232 WALDGRGIVNKPLFEVKHYIDEGLLVPILEETPPLGAQLAAIYPHKRFQDPKVRLMIDFM 291


>gi|153802478|ref|ZP_01957064.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|124121997|gb|EAY40740.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
          Length = 312

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 5/191 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P+   +
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLVQRGTPVHPTD 189

Query: 186 LDKHNLITFGD 196
           L +H+ +   +
Sbjct: 190 LAEHDCLYLAE 200


>gi|326385945|ref|ZP_08207570.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209617|gb|EGD60409.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 289

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 116/287 (40%), Gaps = 18/287 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   AR  SFT AA +LHL+Q ++SRQI  LET +G  LF+R  + + LT  G    R 
Sbjct: 6   AFEAAARHQSFTAAANELHLTQGAVSRQIRALETTLGAPLFHRDKQKVKLTVAGEAYARD 65

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E   ++    +  + +     G L +A     G   L   L  FL   P I + L   
Sbjct: 66  IREALRRISRATLGFRAN--PDGGSLTLAILPAFGTRWLAPRLPAFLAANPGITVNLETR 123

Query: 130 NKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               D   D  D AI       P   +  +  ++V           Y  + REP    +L
Sbjct: 124 LDPFDFRFDNVDAAIHFGSDDWPGARTMHLMDEMVFPACSPDLRARY--DFREP---GDL 178

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L+  G   P   E   W       IGE  +  + ++ +LS  Q    G G+ALLP 
Sbjct: 179 VRAPLLHLGPR-PNAWE--LWFEANHVAIGE--VHGMLLDQFLSAAQAAASGLGVALLPR 233

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + +      +LV  ++  +T +   Y  +P        L+ FR ++
Sbjct: 234 TLFEPELARGDLVPAIDRPMTTTGAYYLAWPATHDPHPALRTFREWL 280


>gi|312882169|ref|ZP_07741917.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370131|gb|EFP97635.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 285

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 127/280 (45%), Gaps = 35/280 (12%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  +   GS + AAE+L LS+S +S  +  LE+++   L  R  R   LT QG   
Sbjct: 6   QMTLFMHIVNCGSISKAAEKLDLSKSVLSSALKQLESDLSTVLLKRTTRKQHLTPQGEAF 65

Query: 67  HR---VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++     +++  +     +ELQ +   PSGK+ I     L + ++   L E   LYPD+Q
Sbjct: 66  YQHCLAMNDIVDRAWDEMLELQNT---PSGKVTITAPHALMEGIITTALAEQFKLYPDVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH---------MHAYAAPHYL 174
           ++L+ D+  +D+     D AIR+ +    S+  QRK+ +               +   Y+
Sbjct: 123 LELLADDHQLDLMQSNIDIAIRVGEST-DSNYKQRKIGSFRDVLCCSESKPSVLSQSDYI 181

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            N  +P  I    +H  +T G  +     ++ + A+              VNS   +   
Sbjct: 182 ANHWQPKKITHKFEH--LTSGSTL-----EYQFTAS------------HTVNSVNQVASM 222

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
             LG GI L+P++I+K  P L   + +   P  +VY  +P
Sbjct: 223 IRLGMGIGLIPEFILKRCPQLFPCLPEHRLPKVSVYAIHP 262


>gi|91792460|ref|YP_562111.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91714462|gb|ABE54388.1| transcriptional regulator, LysR family [Shewanella denitrificans
           OS217]
          Length = 307

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F   A  GS T AA+ L +S ++ S  +  LE ++   LF R  R L LT +G    
Sbjct: 6   LALFVRTADCGSITAAAQALDMSTAAASAAVKRLEKQLNSTLFIRSTRQLRLTTEGEHFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L   Q  ++    + +G++RI+   DLG+NLL   + + +  +PD+++ LI
Sbjct: 66  LHCRKALDTLAAGQASMEALQGRIAGEVRISAPSDLGRNLLLPWIDDIMDEHPDLRLHLI 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D   D  D A+R  +P   SS++   +  +     A+P YL     PL+  +L 
Sbjct: 126 IGDSLADFYHDRIDLALRYGRP-NDSSMVAFNIANVERIICASPSYLSRFGMPLTPADLA 184

Query: 188 KHNLITF 194
            HN + +
Sbjct: 185 DHNCLLY 191


>gi|182416546|ref|ZP_02947971.1| transcriptional regulator, LysR family [Clostridium butyricum 5521]
 gi|237669141|ref|ZP_04529125.1| transcriptional regulator, LysR family [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379618|gb|EDT77100.1| transcriptional regulator, LysR family [Clostridium butyricum 5521]
 gi|237657489|gb|EEP55045.1| transcriptional regulator, LysR family [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 297

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 121/264 (45%), Gaps = 32/264 (12%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+ +L  F  +++  SFT AA+ L  +QS+I+ QI  LE E+ +KLF R  +  TLT +
Sbjct: 1   MDFKQLNAFLTISKLQSFTKAADALGYAQSTITTQIKLLECELDVKLFERIGKTTTLTHE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL     ++  KL T       +  KP+G L I     L    L   LKE+  LYP  
Sbjct: 61  GKKLLPYAKQIL-KLSTDIKSTVSNENKPTGTLTIGAAESLCVLRLPEILKEYKHLYP-- 117

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL---VTIHMHAYAAPHYLKNCRE 179
                    D+D+S+ +  CA   R  + S +LI       V I    + +   LK   E
Sbjct: 118 ---------DVDVSLKFGSCA-DFRHYL-SENLIDVAFSLGVKIDSDEFISDVELK---E 163

Query: 180 PLSIQELDKHNLITFGDLIPKCMED---------FNWLATVDRPIGEPRISC---LQVNS 227
           P+ +     H+LI   ++ P  ++D          ++ A  +R + +  I     L+  S
Sbjct: 164 PMLLLAYPGHDLINKREIFPTDIKDESLILTETGCSYRAAFERILKDNGIKANITLETGS 223

Query: 228 YLSIMQYCVLGSGIALLPDYIVKD 251
             +I Q+ + G GI  LP+  VKD
Sbjct: 224 VQAIKQFTMSGLGITFLPEIAVKD 247


>gi|167590037|ref|ZP_02382425.1| transcriptional regulator, LysR family, putative [Burkholderia
           ubonensis Bu]
          Length = 301

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 135/293 (46%), Gaps = 25/293 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-SKLHRV 69
           F   AR G+FT AAE+L+++Q ++S+Q+  LE+ +G++LF R A+ L LT  G +   R+
Sbjct: 15  FDAAARHGNFTRAAEELNVTQGAVSKQVVKLESFLGMQLFVRDAKALHLTRAGQTYADRI 74

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI-- 127
              +    E T + ++E +      + IA         L   + EF   YP + ++++  
Sbjct: 75  HDMLISCSEATALVMKEPTPH---SITIACASGTAGMFLTPIIAEFSREYPSVAVRILVR 131

Query: 128 -----LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-PL 181
                L+  + DI + Y    IR   P   S +   +++   +HAY AP YL   R  PL
Sbjct: 132 EGVFNLNPAEFDIGVYY----IRDAPPPGMSGI---RIIEEEVHAYCAPDYLGRRRVLPL 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL    L+   +   + M   +W    D  I    +  +  NSY  ++Q  + G GI
Sbjct: 185 ---ELMSSTLLVAEEQQRQWMSWRDWFHLCDSEITYKPLRTITANSYPVLLQLALRGHGI 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L  ++++    ++ +LV   +   +        +P+  ++T  +  FR ++ 
Sbjct: 242 ILGWNHMITPLVESNDLVLASDASASFGGAYQLVWPDDRRDTTAVARFREWLL 294


>gi|134301634|ref|YP_001121602.1| transcriptional regulator, LysR family protein [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134049411|gb|ABO46482.1| transcriptional regulator, LysR family protein [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 298

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 13/267 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LET+    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKAIGISPPVVSKQIQILETKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 64  LLYEKASLILNELEATKEKIFAEDILIDSELKISAPNSFGIKYLCNIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+ +     A+  YLKN   P +I+
Sbjct: 124 NINLSDSYINIIDEDFDLVIRI-GALDDSNLITKKLMPMPSLLCASEQYLKNYGIPKTIK 182

Query: 185 ELDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L+ H  I + +        +E  N    ++      RI     NS   ++Q C+ G GI
Sbjct: 183 DLENHLFIQYNNHSSSNRIILESVNKTEIIN---VRQRIVT---NSAGMMLQSCLDGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITP 265
           A LP + + D   +  LV ++ +   P
Sbjct: 237 AKLPLFEIIDKLHDKKLVHLLPNTRNP 263


>gi|161520211|ref|YP_001583638.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353611|ref|YP_001949238.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344261|gb|ABX17346.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337633|dbj|BAG46702.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 306

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 98/194 (50%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDKLDGVTTFVQVVESGSFALAAERLGMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +P GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALAELEAAEADLDCGRNEPRGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDLIEEGIDLAVRIGPLEDSTSLAVRRLGTQYGSLGAAPSYLARYGMP 180

Query: 181 LSIQELDKHNLITF 194
            S+ +L  H  + +
Sbjct: 181 QSLDDLKNHRTVAY 194


>gi|221069902|ref|ZP_03546007.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220714925|gb|EED70293.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 295

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V   GSF+ A  +L LS S++S+ I+ LE  +G++LF R A  + LT++G 
Sbjct: 4   FGEMTVFLRVIEEGSFSGAGRRLGLSPSAVSKLIARLEARLGVRLFERIAAAIRLTQEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +    +  V   +E  +  ++ +  + SG +RI T +   + L+   L   L  +P + +
Sbjct: 64  RFRIASQRVVQAMEQAEACVRVTDAEISGTVRIHTALTTAKYLVAPRLHLLLDRHPRLHL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +L  +  D      D AI   +P +  +LI R L+       A+P YL+    P   +
Sbjct: 124 DFVLGTERGDFVRQGIDVAIHSGRPTE-QTLIGRPLMLRPWVIAASPQYLQRFGHPEQPE 182

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L +H  + F          + +   L T+D P      S +  N    +    +LG G+
Sbjct: 183 DLLQHRCLNFTIRTQWNRWTLHEEGGLKTIDIP------SHIGANQGELLRSLALLGHGV 236

Query: 242 ALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             L  + +  +       P L +  E      F  Y  YP       +++A  +F+
Sbjct: 237 VRLAHFHIAADLERGTLVPLLPQFQERSEDDRF--YLLYPRGRSLAPRVRAVVDFL 290


>gi|320158027|ref|YP_004190405.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
 gi|319933339|gb|ADV88202.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
          Length = 304

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 16/250 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSF+  A++L +S SS+SR I+ LE  +  KL  R  R + L+  G ++
Sbjct: 12  EMAIFVNVVESGSFSKTAQKLGVSPSSVSRSITRLENVLEKKLLERTTRQMRLSATGQEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           + + S++ +  +      Q    + SG LRIA    L + +L   + +F+  +P + +QL
Sbjct: 72  YSLCSDMLNAAKMAVSAAQTDKSEASGSLRIAAPKALSRQVLMPLVLDFIAEHPKVALQL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            + +  ID   D  D  I++  KP +   L+ R L    +   A+P YL+    P    +
Sbjct: 132 KVADHYIDPIGDEVDVIIQITDKPTE--GLVARSLGRCRLVLCASPDYLQQQGTPNHPDD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL----SIMQYCVL-GSG 240
           L  HN +  G+  P+   D  W    D  IG  +IS     S+      I +  VL G G
Sbjct: 190 LVGHNCLCLGE-NPR---DRVW----DFTIGSRKISVNVKGSFAVNHSEIRREAVLRGLG 241

Query: 241 IALLPDYIVK 250
           I++ P++ ++
Sbjct: 242 ISVFPEFAIR 251


>gi|313498958|gb|ADR60324.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 293

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 129/281 (45%), Gaps = 21/281 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD LR+   V+R GSF  A + L ++ S++SR+++ LE  VG  L  R   G  LT +G
Sbjct: 6   NWDDLRLLLAVSRRGSFLQAGQLLGIAASTLSRRLTQLEIAVGEPLVERGVEGCRLTSRG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             L  V       L   +  L ++S +P   SG + ++        +L+  ++ F  L+P
Sbjct: 66  QSLVEVAIAAESGLR--RQTLSDTSQQPTELSGSVLVSAGEGFSDYVLEA-IRRFTSLHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              ++L +  +   I+   AD A+R    +   SLI R +  +    +AAP YLK     
Sbjct: 123 RCSVELTVAAEFHKIARGVADVAVRTAH-LGEPSLIYRPIGRLAYGIFAAPGYLKQF-PG 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++      +L+   D++P+        A +DR       + + VNS+   +Q    G G
Sbjct: 181 VTLSTAVSISLLPPLDILPQMRA--AKAAGLDR-------AQISVNSFAVQLQSVRRGMG 231

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY-PEALKNT 280
           +A+LP     D   LV +   +  P   +Y    P+ALK  
Sbjct: 232 VAVLPRIAATD---LVELFPHLQLPDMEIYLVTRPQALKQA 269


>gi|300718354|ref|YP_003743157.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299064190|emb|CAX61310.1| Putative transcriptional regulator, LysR family [Erwinia billingiae
           Eb661]
          Length = 311

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 126/286 (44%), Gaps = 15/286 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +  SGS + AA +L  +Q +ISR++  LE  +G+KL  R    + LT+ G +  
Sbjct: 15  MHTFVRIVESGSLSAAALRLSTTQPTISRRLQSLERLLGVKLLQRTTHVMKLTDDGERCF 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +  + +L+ ++ +P G LR+      GQ+ +   L+++L  YP + I+ +
Sbjct: 75  AHAQELVERWQAIEDDLRGAAEEPKGVLRVLVPHAFGQDQMIAPLQDYLQRYPKMTIEWM 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR---EPLSIQ 184
           L ++  D   +  DCA+ +   +   S++   +  +     AAP  L N     +P ++ 
Sbjct: 135 LSDRRPDFIAEGIDCAVHV-GALTDPSVVALLVAEVPRIVVAAPALLDNASDIDQPAALA 193

Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL    L TF    +    E  N      RP        L  +S  ++    + G G+ +
Sbjct: 194 ELPWVALSTFYRQEVVLNSEQGNTQRIDIRP-------QLLTDSLYALRNSVLAGMGVGI 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              + VK++     L  +  D       VY  YP A     KL+ F
Sbjct: 247 ASSWAVKEDIEQGRLRHLCPDWHAAPLPVYLVYPYARFYPAKLRQF 292


>gi|293602967|ref|ZP_06685406.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292818761|gb|EFF77803.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 319

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 130/284 (45%), Gaps = 10/284 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +  +GS + AA QL  +Q ++SR++  LE  +G++L  R    + LTE G + +
Sbjct: 26  IETFVRIVEAGSLSAAAAQLGGTQPTVSRRLQLLERTMGVRLLQRSTHAIRLTEDGQRCY 85

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    ++ + E++ +  +P G LR+      GQ+     L  +L  YP+++++ +
Sbjct: 86  ERAKDLIATWQSFESEVRGAGDEPIGTLRVVAPHAFGQDQFVEPLACYLRKYPNMRVEWL 145

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D+  +  DCAIR+   +   S+I  KL  +     A+P  L+    P   +EL 
Sbjct: 146 LHDRMPDLIAENVDCAIRV-GAVTDPSVIAIKLGVVPRIVIASPELLQGAPVPQHPEELA 204

Query: 188 KHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +   +       +        AT   +R   +PR+S    +   ++ +  VLG G+ L  
Sbjct: 205 RLPWLALRTFY-RTEVSLTHCATGGTERFGIQPRLS---TDGLQALRKAAVLGLGVGLGS 260

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            + ++++     LV +  +       V+  Y  +     +L+ F
Sbjct: 261 AWAMQEDLAAGRLVHVAPEWRADPLPVFLVYAPSRFQPARLRRF 304


>gi|262402979|ref|ZP_06079539.1| transcriptional regulator [Vibrio sp. RC586]
 gi|262350478|gb|EEY99611.1| transcriptional regulator [Vibrio sp. RC586]
          Length = 312

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 5/191 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   IE+  S   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSLLMVNAAQQA-IEISSSEHAEPTGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+     D A RL  KP    +L+ R+L   ++   A+P YL     P    +
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDKP--DENLVLRELCKTNLVLCASPEYLAQRGTPTHPTD 189

Query: 186 LDKHNLITFGD 196
           L +H+ +   +
Sbjct: 190 LAEHDCLYLAE 200


>gi|83593550|ref|YP_427302.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576464|gb|ABC23015.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 317

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 121/298 (40%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR G FT AA +LH++ +++S Q+ GLE  +G+ LF+R A+GL LT  G  
Sbjct: 9   NALRAFEAAARHGGFTGAARELHVTPAAVSHQVKGLEDALGVSLFHRLAKGLELTAAGRA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +  + +L      L+  ++   G+L ++         L   L  FL  YPDI + 
Sbjct: 69  YLPELTAGFDQLARASERLKRGAL--VGRLTVSVLPSFAAGWLAPRLASFLRRYPDILLD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L    + +D   +  D  IR    I    L   +++   +    AP  L          +
Sbjct: 127 LRSTPRTVDFIRERVDLGIRYGGGIY-PGLASYRILEEEVFPICAPALLNGPVPLRGFAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFN----WLAT-----VDRPIGEPRISCLQVNSYLSIMQYCV 236
           L  H L+    ++P   E +     WLA      +D   G            ++++  CV
Sbjct: 186 LRHHVLLHDPGILPG--EPWTGWEPWLAEAGVTDIDLEAGH------GFTESIAMIHACV 237

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G G+ +    +V +   +  LVR         F+ +   P   +   K  AF  ++ 
Sbjct: 238 AGLGVGIGRSGLVTELLRSGRLVRPFPVSRPADFSYWVVVPPPSQTNPKAAAFIGWLL 295


>gi|84385208|ref|ZP_00988240.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84379805|gb|EAP96656.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 310

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 1/185 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+V   VA   S T AA  L +  ++ S  +  +E  +G +LF R  R L L+  G +
Sbjct: 4   EDLQVILKVAEFRSITAAATNLDMRTATASAAVKRVEAALGAELFVRTTRHLRLSSAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    LE  ++ ++E      G++RIA + DLG+NL+   L EFLL YP+  ++
Sbjct: 64  YLPECEQALKMLEQAKLNMREELGIVDGEIRIALSSDLGRNLITPWLDEFLLEYPNAALR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + + +ID   D  D A+R   P   +++   K+  +     AAP YL     P    +
Sbjct: 124 TSISDSNIDFYRDSVDMALRYGSPTD-ANMYGFKICDVPRILCAAPEYLAEMGIPKHPSD 182

Query: 186 LDKHN 190
           L +HN
Sbjct: 183 LTQHN 187


>gi|238793047|ref|ZP_04636676.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238727647|gb|EEQ19172.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 307

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 96/184 (52%), Gaps = 4/184 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A+S +F+ AA QL ++ +++S+ I  LE ++ ++LF R+   + LT++G  L 
Sbjct: 11  LPAFLTAAQSENFSTAARQLGITPAAVSKNIRVLEEKLALRLFQRNTHSVVLTDEGKTLL 70

Query: 68  RVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              + ++  L  T   ++ +   +PSG +R++     G+ LL   + +F+  YP I + L
Sbjct: 71  ARVAPLWQALSNTLDTVRNNDEQQPSGTVRVSVIPGFGRQLLMPLIPKFMARYPQIDLDL 130

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L+ + +++  +  D  I  R  P   S LI R+   + M   A+P YL     P S Q+
Sbjct: 131 SLEARVVNLVGEGFDVGIGTRIDP--DSRLIARQFYPMQMLLAASPAYLARNGSPTSPQD 188

Query: 186 LDKH 189
           L +H
Sbjct: 189 LYQH 192


>gi|238782740|ref|ZP_04626770.1| LysR-family regulatory protein [Yersinia bercovieri ATCC 43970]
 gi|238716400|gb|EEQ08382.1| LysR-family regulatory protein [Yersinia bercovieri ATCC 43970]
          Length = 305

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 129/302 (42%), Gaps = 31/302 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T +G+  +
Sbjct: 7   MRIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITAEGTLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++    E          ++P GK+RI     L +N++   L +F   YP I + L 
Sbjct: 67  QRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALSDFYQRYPHITLILG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  ID+  +  DC +R   P     L  R +        A+P YL     P S+ +L 
Sbjct: 127 ANDSTIDLMREGVDCVLRAWLP-HDEQLAVRNIGQQPQITCASPAYLAKYGVPTSLDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRI------SCLQVNSYLSIMQYCVLG 238
            H  + +          F+ L   D P+    + R+      S L VN   + +   V G
Sbjct: 186 GHQAVGY----------FSQLTHRDYPLEFTYQGRVETRELPSILSVNGADAYIAAGVAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+   P   ++       L+ ++     P+  ++  +P      G+  A R  + +   
Sbjct: 236 LGLIQAPTQGIQSQLAQGELIEVLPHSPPPAMPLFIMFP-----PGRFLAPRVRVLI--- 287

Query: 296 DW 297
           DW
Sbjct: 288 DW 289


>gi|302060444|ref|ZP_07251985.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
          Length = 304

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 135/289 (46%), Gaps = 17/289 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F +V  + SFT A ++L +S S + + +  LE  +G++L +R  R + LT +GS     
Sbjct: 9   LFVLVTETRSFTLAGKRLGISSSGVGKSVGRLEESLGVRLVHRSTRSIALTLEGSIFLDR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +L+  Q+EL  +   P G+LRI+  +  G  L+   + +F+  YP+I++ +   
Sbjct: 69  CRRILSELDAAQLELSNARDLPKGRLRISVPLVFG--LVMPVVIQFMRTYPEIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R  +P   S L+ +++ +  +    +P Y      P    +L  H
Sbjct: 127 DRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCIVGSPDYFARHGLPEQPADLIHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSGIALLPD 246
             +      P   +  +W   + R  G       Q    N+   +++    G GI  LPD
Sbjct: 186 ACLQHK--FPSTGKFEHW--PLRREPGSEDFELPQTMVCNTTEVLVEVARAGLGITCLPD 241

Query: 247 YIVKD---NPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++        L+ I+ D    T SF +++   + L  + +L+ F +F+
Sbjct: 242 FMLASAIRKGELIPILSDYTLHTGSFRLFWASSKHL--SVRLRVFIDFM 288


>gi|288960544|ref|YP_003450884.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912852|dbj|BAI74340.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 307

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 18/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR+GS T AA +L L+QS++SRQI  LE  + ++LF+R  + + LT  G    
Sbjct: 14  LSAFEAAARTGSITAAARELSLTQSAVSRQIKALEELLEVELFHRERQTIRLTAGGEYYV 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +   ++ T  + L+ +     G L IA     G   L   L  FL   P I I L+
Sbjct: 74  REVRDALRRISTASLNLRANPF--GGTLSIAVLPAFGARWLAPRLPGFLAGNPGITINLV 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSS---SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
                 D  +D  D AI   KP       +L++R+ V+        P      R+  + +
Sbjct: 132 TRMAPFDFRLDPVDAAIHCGKPDWPGGEMALLRRETVS--------PVCSPALRDRFAFR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +  +  L     L  +      WL   D P     +  +  + + + ++  V G GIAL 
Sbjct: 184 QPAELRLAPLLHLTGRPDAWERWLDRHDSPADG--VHGMLFDQFATAIRAAVAGLGIALP 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P +++ +   +  LV  ++  +      Y  +P        L AFR++I 
Sbjct: 242 PLFLIGEELRSGQLVPALDLPMESGNAYYLVWPAERAGYPPLAAFRDWIL 291


>gi|90411791|ref|ZP_01219800.1| Putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90327353|gb|EAS43717.1| Putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 300

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 125/281 (44%), Gaps = 24/281 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  A+   L+ S +S++I+ LE ++G++L YR  R LT++E G  
Sbjct: 5   DDLILFAQVVEHGSFSKVADLNSLTNSVVSKRIARLEADLGVQLLYRTTRKLTVSEAGKV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++    V          +       +G ++++     G  LL   + EF  ++P + + 
Sbjct: 65  LYQGAKNVKQAAVEAIDAVYGYGESVTGHVKMSVPTISGDLLLADAVAEFCSMHPGLTVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N  +D+  D  D  IR    ++ SSLI R ++       AAP Y+    +P++ ++
Sbjct: 125 MSLENLFVDLVEDGYDLVIRTGY-LEDSSLIARHILDSQWVICAAPAYIARVGKPMAPED 183

Query: 186 LDKHNLITFGDLIPKCME------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  HN + +        E      + N++  V              ++  ++ +  + G 
Sbjct: 184 LVNHNCLQYAYQTTGASEWEFKGDNGNYIVKV--------AGNFSTDNAAALRKAALGGY 235

Query: 240 GIALLP------DYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
           G+A +P      DY+  D   L+ +    +     +Y  YP
Sbjct: 236 GLAYVPRCLVYQDYLKGD---LIDVFPKRVGKKLGIYAVYP 273


>gi|170734944|ref|YP_001774058.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820982|gb|ACA95563.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 318

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 6/190 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VAR GSF  AA +LH++  ++ +QI  LE   G+ LF R  RG+ LT++G+ 
Sbjct: 25  NALRAFDAVARHGSFAGAAAELHVTHWAVGKQIRLLEDWFGLPLFDRRPRGVALTDEGAA 84

Query: 66  LHRVTSEVYHKLETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L    S  + +L T  + L+ ++   + SG +R+   +      L   L +F   YPDI 
Sbjct: 85  LLNDVSHAFERLGTAVVRLRHNTFTHRISGVVRVNVPMSFAFCWLLPRLADFHSRYPDID 144

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-S 182
           +++   ++ +    D  D  +R   P Q + ++ R L+         P  L+  ++P+ S
Sbjct: 145 VRVSTTSRKLRYVADAFDIGVR-SGPEQGAGVVSRPLMPDLRVPACNPALLR--QQPIQS 201

Query: 183 IQELDKHNLI 192
           + +L  H L+
Sbjct: 202 VADLRHHTLL 211


>gi|107028531|ref|YP_625626.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686529|ref|YP_839776.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897695|gb|ABF80653.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652244|gb|ABK12883.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 330

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 124/292 (42%), Gaps = 19/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AAE+L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 47  LLVFEAAARHESYTRAAEELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 106

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L  F   +P + + L 
Sbjct: 107 AELSGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHGFYAAHPGVTVHLH 165

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK----NCREPLSI 183
                ID   D  D AI +        L   +L    + A A P   +    + R P   
Sbjct: 166 SRIGAIDFLHDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIAPPDTGRGRKADARTPAWA 224

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
               +  L+          E F+      R +   RI    ++ S+L  +Q    G GI 
Sbjct: 225 A---RQTLLGVTSNQQAWAEWFSHYRLEHRQM---RIGPSFELTSHL--IQAVRAGMGIG 276

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L+P  +V+D      LV I  D IT   + Y  YP   +    L AFR ++ 
Sbjct: 277 LVPKVLVEDELSRGELVPI-GDAITSQRSYYLVYPPGNETLPSLVAFREWLL 327


>gi|299770465|ref|YP_003732491.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700553|gb|ADI91118.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 283

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 134/290 (46%), Gaps = 21/290 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ L  F V     S + AA +L +  +++SR+I+ LE  + +KL  R  R   LT  G
Sbjct: 3   DWENLHYFSVFTEEKSLSAAARKLGVDHATVSRRIAQLEQNLKLKLVDRRPRTYILTPDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L ++ + +  +  + +   Q    +  G + I+       +L+  +L  F   YP ++
Sbjct: 63  ERLAQMVARMMEETFSIERLTQAGQQEVMGSVSISMPPLTAAHLIMPHLGRFYRHYPQLK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ D   + +    AD A+R  +P +  +L+ RK+  I    YA P+YL +   P + 
Sbjct: 123 LRVLGDVHYVSLQHSEADIAVRFGRP-KDENLVARKVGEIPFGIYAGPNYLAST-APENY 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + +        G    K  E  N+   +   + P  + R +C +V              G
Sbjct: 181 EWISVEVGGVHGQKQQKLKERLNYKEPIIVTNHPELQWRAACGEV--------------G 226

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LPD++   + NLVR+ +D    S  ++    E L+++  ++   +F+
Sbjct: 227 LAVLPDFLGALS-NLVRLQDDHPM-SAEIWLVTHEDLRHSPAIRVVMDFL 274


>gi|261251262|ref|ZP_05943836.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260938135|gb|EEX94123.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 304

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 142/298 (47%), Gaps = 16/298 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++   GSFT AA+QL+++ S++S+ ++ LET + +KLF R  R L +T  G +++
Sbjct: 13  LASFILIVDEGSFTAAAKQLNVTPSALSKLVTRLETSLSVKLFERTTRKLIITRAGQQVY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              + V        +EL  S+ +  SG L +A       ++LQ ++  FL  YPDIQ++L
Sbjct: 73  D-QAMVMLNAAKQAVELSTSAHEEMSGALTVAAPEAFLNSVLQPHVVPFLQKYPDIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            + + +ID+  D  D A +L  KP    +L+ R++   ++   A+P Y+     P    E
Sbjct: 132 RVADGEIDLIRDGIDVAFKLTDKP--DENLVLREVSKTNLVLCASPDYIAQKGMPEHPTE 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALL 244
           L++H+ +   +       D  W    D       +S     ++  +    V  + GI + 
Sbjct: 190 LEQHDCLYLAE----NDRDHIWDFFKDDEYHSVSVSGRYAVNHSQMRLTGVKNALGIGIF 245

Query: 245 PDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            D+++ D      +V ++ D    S     +   YP+      +L+ F ++I  + R+
Sbjct: 246 HDFVIADAIAQKQVVPVLSDWTIKSNYHGAIAMQYPQTKYMPARLRGFIDYITEQLRN 303


>gi|258626466|ref|ZP_05721307.1| HTH-type transcriptional regulator [Vibrio mimicus VM603]
 gi|258581248|gb|EEW06156.1| HTH-type transcriptional regulator [Vibrio mimicus VM603]
          Length = 302

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 129/305 (42%), Gaps = 24/305 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +  R F  V   GSFT AA  L L+Q  IS+ ++ LE +VG KL +R  R + +T
Sbjct: 1   MELDLNAARCFVKVVELGSFTQAANLLGLTQPGISKAVNRLEAQVGAKLIHRSTRQVRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    + +  E    EL+ S   P G L+++    L  +L+   +K     YP
Sbjct: 61  EDGQLFMKRIQPLIYGFEEAHSELKFSKTTPVGCLKLSAPSALSHSLIVPIVKLLTERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I+L L ++ + +  +  D  +R    I    L+   L        A+P YL     P
Sbjct: 121 ELRIELSLTDQKVHVFDEGYDAVLRF-GSIDDERLVAFALQDAEWVTVASPEYLAKQGIP 179

Query: 181 LSIQELDKHNLI-----TFGDLIP-------KCMEDFNWLATVDRPIGEPRI-SCLQVNS 227
               EL   N +     +  + +P       K +E    +  V    G+P I + LQ   
Sbjct: 180 HHPDELRNFNCLHVKARSQTNTLPWRFRIDGKGIEYRQLVGNVCFDHGDPLIDAALQGLG 239

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            + +++ CV    +A         N  L  ++ D    + + +  YP + + + KL   R
Sbjct: 240 VVQVLR-CVTADKLA---------NGELKEVLTDFRPQAHSFHLLYPPSRQRSAKLTVLR 289

Query: 288 NFIFL 292
             + L
Sbjct: 290 EALIL 294


>gi|134292474|ref|YP_001116210.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135631|gb|ABO56745.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 302

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 73/130 (56%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            ++  L  FY VAR+GS +  AE+LH+SQ +++R++  LE  +G+ LF R  RG+ LTE 
Sbjct: 1   MNFTHLLAFYEVARAGSISAGAERLHVSQPAVTREVRELEDRIGVVLFDRLPRGVALTEG 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+   S ++   +T + EL E +   SG ++I  +  LG   +   +  F  L+P +
Sbjct: 61  GKLLYEYASRIFTLADTAEKELAELAGLGSGHMKIGASGTLGVFFVPEAIARFNALHPRV 120

Query: 123 QIQLILDNKD 132
            I L + N +
Sbjct: 121 AIDLTVTNTE 130


>gi|157961006|ref|YP_001501040.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157846006|gb|ABV86505.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 300

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 13/207 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +  +GSF+ AA++L +  +++SR+++ LET +  +L  R+ R L LTE+G  L +  
Sbjct: 15  FVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRKLRLTEEGIALFQQY 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  + ++       S  KP G LRIA  + +   +    L EF   YPDIQ+ +  +N
Sbjct: 75  QSIISQFDSIS---GLSVDKPEGTLRIAAPVSIVSMIFIKTLNEFCEQYPDIQLHIAQNN 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             ID+  +  D AI +      SS I   L  ++   +A+P Y+          EL+ H+
Sbjct: 132 NVIDLIDEGVDVAI-VGGTQPDSSWISSSLGVLNYGLFASPEYINKAPVLTHPGELENHD 190

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGE 217
           LI       K    +NW  ++  P GE
Sbjct: 191 LI-------KVWPLYNW--SLKHPSGE 208


>gi|167629612|ref|YP_001680111.1| transcriptional regulator, lysr family [Heliobacterium
           modesticaldum Ice1]
 gi|167592352|gb|ABZ84100.1| transcriptional regulator, lysr family [Heliobacterium
           modesticaldum Ice1]
          Length = 310

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 13/202 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + +  R FY+VAR GS + AAEQL+++Q ++SR I  LE ++G  LF+R  +G+ LT
Sbjct: 1   MFVNTELYRAFYLVAREGSISKAAEQLYITQPAVSRSIQQLEEKLGCVLFFRTPKGVKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L     + ++ +   +  L + +   +G++ IA    + +N L  +LK F   YP
Sbjct: 61  KEGELLFPYIEQAFNFIAVGEKTLAQITALENGEITIAAGDTICKNYLPPHLKRFKEAYP 120

Query: 121 DIQIQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
            I+I +          +L    +DI   +A     +  P  ++ L   +++ I       
Sbjct: 121 GIRIHVTNENTPSTIRLLKKGKVDIGFVHAPV---VNDPSATALLSIHEVLQIQDCFVVG 177

Query: 171 PHYLKNCREPLSIQELDKHNLI 192
             Y +    P S++EL ++ LI
Sbjct: 178 EKYKELAARPRSLEELARYPLI 199


>gi|330448282|ref|ZP_08311930.1| bacterial regulatory, Fis family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492473|dbj|GAA06427.1| bacterial regulatory, Fis family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 310

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 135/293 (46%), Gaps = 12/293 (4%)

Query: 6   DKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D L+   ++A  G   +FT AAE+L +S+S +S+QI  LE  +G +L  R  R + LTE 
Sbjct: 3   DNLQQMVILAAVGHEQNFTRAAERLGISKSQVSKQIKCLEDRLGCQLVQRSTRTVVLTEI 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      ++   +   +  +     + +G LRI      G   +   L EF    P++
Sbjct: 63  GLQYADYGQQLIDTVSEAEAMVAGYRNEITGVLRIGIAQSFGNIHITSALAEFQKQNPNL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L +   ++  +  DC I + +      ++ RKL        A+P Y++    P  
Sbjct: 123 ELEISLFDHRPNLLEEGFDCWIAIHEH-PPEGMVARKLAKCEFVVVASPDYIEQHGTPTV 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +L +HN IT+     K +   NW  + D      R+S   ++++  +++   V G GI
Sbjct: 182 PGDLRQHNCITYESRERKYV---NWEFSRDGLKQSIRVSGNYRIDNAPAVLDAAVSGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L  Y++ D   +  LV ++ D   T    +Y  YP       K++ F +F+
Sbjct: 239 AYLSTYLLTDEIESNKLVTLLSDWQTTVDLPIYAVYPRRKYLAPKVRCFIDFM 291


>gi|226946347|ref|YP_002801420.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
 gi|226721274|gb|ACO80445.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
          Length = 302

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 127/288 (44%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA+ GSF  AA    ++ + + R++  LE  +G+KL +R  RGL LTE G + 
Sbjct: 6   ELHSFVQVAQKGSFAAAALSEGVTPAILGRRLDALEKRLGVKLMHRSTRGLRLTELGERF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  + +  + E+  +S    G L ++     G+  +  + + FL  +P++++  
Sbjct: 66  LERARQLLREFDDVEAEIASNSSLVKGHLAVSAPAAFGRRHVAAHAQGFLQRFPNLRLSF 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  IR+ + ++  + +  +L          P Y     EP ++++L
Sbjct: 126 NLTDSVVDLVSEGFDMGIRIGE-VRDPNYVAIRLFPNRRVVCGTPAYFARHGEPRTLEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + F     +  +   W    D      ++   L  N    +  +   G GI    
Sbjct: 185 SRHNCLAF---TLQGGQQRGWTFLRDGQQVAAKVGGNLSCNDGELLFSWVCQGIGIGWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + ++       LV ++++   P + +   +P+      K++ F +++
Sbjct: 242 TWEIQGELKRGELVTVLDEFALPEYDIQAVFPQQRFLPAKVRFFIDYL 289


>gi|170739200|ref|YP_001767855.1| MarR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168193474|gb|ACA15421.1| transcriptional regulator, MarR family [Methylobacterium sp. 4-46]
          Length = 309

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 123/279 (44%), Gaps = 13/279 (4%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS + AA++L+ S  S+SR ++ LET++G +L  R  R L  T  G  L+        ++
Sbjct: 29  GSLSAAAKRLNRSLQSVSRALTALETDLGTELIRRTTRRLQPTPAGMILYERLRTALKEI 88

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
              +++++    K +G  RI  ++      +      F+  +P++ I L+L++  +D+  
Sbjct: 89  GDARLQVKSEKTKINGLFRIGASVLFAPKFVVPCATAFMNRFPEVSIDLVLNDAVVDLIE 148

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI--TFG 195
              D AIR+   + + SL  +K+  +     AAP YL     P    +L  H  +  TFG
Sbjct: 149 HRLDVAIRIGD-LGAISLRSKKIAELRRVLVAAPSYLARHGVPRDPDDLASHLCVVRTFG 207

Query: 196 DLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVK---D 251
                  E   W  +VD  +   ++    + +         +LG+GI L P + V+   D
Sbjct: 208 P------EGDAWPLSVDGVVVRTQVKGAFRCSDAAGANAATILGAGIGLAPLWQVRQDLD 261

Query: 252 NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              L  ++     P   V   +P +L+   + + F   +
Sbjct: 262 EGRLELVLPQCEPPPIRVSAVWPGSLETPARTQLFVEMV 300


>gi|86145768|ref|ZP_01064097.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85836467|gb|EAQ54596.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 310

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 5/239 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+V   VA   S T AA  L +  ++ S  +  +E  +G +LF R  R L L+  G +
Sbjct: 4   EDLQVILKVAEFRSITAAATNLDMRTATASAAVKRVEAALGAELFVRTTRHLRLSSAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    LE  ++ ++E      G++RIA + DLG+NL+   L EFLL YP   ++
Sbjct: 64  YLPECEQALKILEQAKLSMREELGILDGEIRIALSSDLGRNLITPWLDEFLLEYPKASLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + + +ID   D  D A+R   P   +++   K+  +     AAP YL     P    +
Sbjct: 124 TSISDSNIDFYRDSVDMALRYGSPTD-ANMYGFKICDVPRILCAAPEYLAEMGTPKHPSD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIAL 243
           L +HN + +   +   ++D  W+    +   + ++   +  N    + ++CV G G+A+
Sbjct: 183 LAQHNGLLYQ--LHDMLQD-EWVFNDGKQDHKVKLKGNRASNDADLVRRWCVAGKGVAI 238


>gi|332284153|ref|YP_004416064.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428106|gb|AEC19440.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 328

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 127/283 (44%), Gaps = 11/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VA   SF  A  QL +S +++SR I+ LE ++G++L  R  R + LT++G+   
Sbjct: 37  LKTFISVAEHASFAEAGRQLSMSPTTVSRAIAALEADLGVQLLMRTTRSVRLTDEGADFL 96

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +++     ++     P G L +   +  G+  +   + E    YPD+Q++L+
Sbjct: 97  TRCRAGIAEIDGAFTTVRGGRSIPRGILTVTAPVMFGRLHIMPVVVELSQQYPDLQVRLL 156

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  + AD AIR+   +  SSL   +L  +     A+P YL     P S+ +L 
Sbjct: 157 LLDRVVNLIDEGADIAIRI-ADLPDSSLHMLRLGEVRRIFSASPAYLAARGRPTSLADLR 215

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H++I   D   +      W L  V  P  + R+S   VN+  + +   V G G+     
Sbjct: 216 DHDMIWGED---EYGPHRGWGLNGVKWPSRQVRLS---VNNMDAAISAAVSGLGVVRTLS 269

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           Y +        L  +  D   P   +   +    K+   ++AF
Sbjct: 270 YQIAGEVATGRLEHLFADDAAPVLPISLLFQSGRKSHPNVRAF 312


>gi|311104648|ref|YP_003977501.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310759337|gb|ADP14786.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           46 [Achromobacter xylosoxidans A8]
          Length = 298

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 122/250 (48%), Gaps = 23/250 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  FY  A   SF  AAE+LHLS SS+S++I+ LE  +G+ LF R      LT+ G +L
Sbjct: 5   QLEAFYWAATCASFAVAAERLHLSVSSLSKRITELEEGLGLSLFDRSGHKAVLTDAGQRL 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIA----TTIDLGQNLLQGNLKEF--LLLYP 120
                ++    E  +  L +S+   SG+ R      T +     L++G    +  L+L P
Sbjct: 65  LPQARDLLASAEQIRASLAQSA-GLSGRCRFGVGELTALTWLPRLIRGVRAAYPDLVLEP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + I  +L+ +  D  +D+A  A R  +P I SSS+ Q           AAP  L+    
Sbjct: 124 YVDIGQVLEQRVADGELDFAVIAGRSSRPNIASSSIGQ-----ADFSWAAAPAVLEGATR 178

Query: 180 PLSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            ++   L++  L+T   G    + ++D  WLA   R  G  R+ C   N++ +++   + 
Sbjct: 179 -MTPALLERLPLVTLPAGAGTTRIIDD--WLA--GREAGGERLCC---NNWGAVVGLLIE 230

Query: 238 GSGIALLPDY 247
           G+G+ LLP +
Sbjct: 231 GTGVGLLPSH 240


>gi|259418788|ref|ZP_05742705.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259345010|gb|EEW56864.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 298

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 133/290 (45%), Gaps = 15/290 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD ++VF  VAR  S + A   L +  +++ R+++  E  +   LF +  +G  L+
Sbjct: 1   MEPQWDDMKVFLAVARESSLSGAGRVLKMDPATVGRRVARFEAALKTSLFVKSPQGYALS 60

Query: 61  EQGSKL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
             G +L  H   +E+   +   +  L   S   SG++RI         +L          
Sbjct: 61  AAGDRLLGHAEAAEL--AMRAGEEALTGPSDTLSGQIRIGAPDGCANYILPQVCAAISKD 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            PD+ IQ++   + I++S   AD A+ +  P     L+Q K+   H+H  A+ +YL++  
Sbjct: 119 NPDLDIQVVALPRVINLSRREADMAVTVSAPTAGKLLVQ-KITDYHLHLAASRYYLRDHH 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
               ++ L  H +I +   IP  + D   ++L      +G  R+S L  NS    ++   
Sbjct: 178 PIEKLEHLQDHRMIGY---IPDMIFDRELDYL----NDLGVERVS-LASNSVSVQIKMLA 229

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GS + ++ D+ +  + +L ++++D  + + + Y    +  + + +L  F
Sbjct: 230 EGSAVGVVHDFSLPSHRSLRKVLKDEFSLTRSFYLVRHQGDQRSDRLNRF 279


>gi|206562563|ref|YP_002233326.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038603|emb|CAR54562.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 317

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 12/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+ G  
Sbjct: 10  NRLAIFVAVVEAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTDAGRV 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++    E     +   +    G LR++  ID G  ++   +      +P + ++
Sbjct: 70  FYDACRDIVRATEAALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAVVALRDRHPGLDVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +++ ID+  D  D A+R+ + +  S+    +L T      A+P ++     P     
Sbjct: 130 LVANDRVIDLVADNLDVAVRIGR-LADSNYRAVQLGTYEKWLVASPAFVARHGLPRDPDA 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
           L     +    L      D +     D   G   + C+     N+  +     + G G  
Sbjct: 189 LAALPFVMLSSLPRPHTLDLD-----DARGGHASVRCVAPVVSNTATACRAIVLAGGGFG 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LL D+   D+     LVR++    T    ++  YP     + K++AF
Sbjct: 244 LLTDFSTADDVAAGRLVRLLPGWRTAPAGIHAVYPSTRLPSPKVRAF 290


>gi|91780981|ref|YP_556188.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91693641|gb|ABE36838.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 334

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 14/252 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V+R GS   AAE +H++ S++SR I+ LE  +G  LF R +RG+ LT +G  L 
Sbjct: 6   LRYFLEVSRHGSVRKAAEHIHITPSAVSRHIAILEGMIGAPLFERRSRGMVLTPEGEILF 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   L+  +  + E      G LRI     +  ++L   +++F++ +  + IQ+ 
Sbjct: 66  KYADRIIGNLDIVKCAVGEIRGMKKGILRIFAIEAVASSILYPAIRDFIVKHSGVTIQVD 125

Query: 128 L---DNKDI--DISMDYADCAI--RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +   DN D+   +  D AD  I  RL +  +   L +  +  +   A AAP +    R  
Sbjct: 126 VVGRDNNDVVHALVRDEADLGIMFRLNRNAEIDYLDEFDMPFV---ALAAPGHPLAARSS 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +S+++L      T    +P      +    V R +G      L VNS     ++   G G
Sbjct: 183 ISVRDLAD----TLVGGLPPSSASRSITDDVMRSLGTQIRYTLTVNSMEMAKEFARTGVG 238

Query: 241 IALLPDYIVKDN 252
           IA+LP    ++ 
Sbjct: 239 IAILPSVCAQEE 250


>gi|288918537|ref|ZP_06412887.1| transcriptional regulator, LysR family [Frankia sp. EUN1f]
 gi|288350056|gb|EFC84283.1| transcriptional regulator, LysR family [Frankia sp. EUN1f]
          Length = 309

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 134/291 (46%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  G+F+ AA QL++S S +SR ++ LE ++ I+L  R AR +TLT  G +  
Sbjct: 7   MRSFVRVADEGNFSRAARQLNISGSLVSRHVAELEKQLDIRLVNRTARAVTLTAAGRRYR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL- 126
                V  +++     L+    +  G L +     +G   L   + +F + +P I ++  
Sbjct: 67  DFADRVLQEMDAEDAALRGLRERVEGPLAVICPKWIGNLDLGEAIADFAVDHPKIHVRFE 126

Query: 127 --ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SI 183
              + ++  +      D A   R  ++ S+++ RKL  I     AAP YL   R PL   
Sbjct: 127 VGGMSDRPFEFLDQGYDVAFHTRD-LRDSTMLIRKLADIEYVLCAAPEYLA-ARPPLKDP 184

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L +++ LI   D I     +   + +      +   +    NSYL++ +  V G G+A
Sbjct: 185 QQLAENDCLIHLNDPIWHLRGNGQEIHS------KVPTAVYSSNSYLTLRKAAVRGRGLA 238

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L+P   V  +     L R + D   P+ ++Y  +        K++ F ++I
Sbjct: 239 LMPIRTVSADLASGLLERALPDYQGPARSLYAVHSPGAHTLRKVRVFLDYI 289


>gi|254485628|ref|ZP_05098833.1| transcriptional regulatory protein [Roseobacter sp. GAI101]
 gi|214042497|gb|EEB83135.1| transcriptional regulatory protein [Roseobacter sp. GAI101]
          Length = 299

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 19/293 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VA   SFT AA +L  SQS++S  +  LE  + ++L  R  R +  T+ G
Sbjct: 7   DLSDLMAFLAVAEERSFTRAAARLGTSQSALSHVVRRLEERLDMRLLTRTTRNVAPTDIG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       ++ +E    +L     +PSG +RI       Q L+   +   +  + ++ 
Sbjct: 67  EQLIETLRPAFNGIEERLTQLDALRSEPSGTIRINAPRWAAQKLILPAVSSLMKAHANLS 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D + +DI  D  D  +RL + ++   +  R    I M    +P Y   C  P + 
Sbjct: 127 VEVEVDQRMVDIVRDGFDAGVRLGEEVEKDMIAVRIGPDIRMIVVGSPDYFARCGTPQTP 186

Query: 184 QELDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVL 237
            +L  H+       T G L       + W    D      R+    + N   S++   + 
Sbjct: 187 HDLTDHDCNNLRFPTLGGL-------YTWEFERDGRELNVRVEGQFISNDPESLIAAAIA 239

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           G G+  LP   + D   +  LV  + D   P    +  YP   +    L AFR
Sbjct: 240 GVGLTCLPSDHLDDHVSSGQLVACLTDWCPPFLGYHLYYPSRRQ---ALPAFR 289


>gi|148553034|ref|YP_001260616.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498224|gb|ABQ66478.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 294

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 133/298 (44%), Gaps = 26/298 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF   AR  +FT AAE+L ++Q+++S QI  +E  +G  LF R  R ++L+  G +L 
Sbjct: 11  VRVFEAAARHLNFTRAAEELAMTQAAVSYQIRMIEDRLGTPLFVRSGRRVSLSPAGQRLA 70

Query: 68  RVTSEVYHKLET--TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              +  + +L+    ++ L ES V     L I+    +    L   L  F L  PDI ++
Sbjct: 71  PAVTAAFDRLDEAFAKVRLAESGV-----LTISAAPGIAAGWLGPRLARFQLAKPDIAVR 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+  ++ +D + D  D  IR+ +  +   L   ++         +P Y+     P +   
Sbjct: 126 LLASHELVDFARDEVDVGIRIGQG-EWPGLRAIEMFGAEFTPMCSPAYIDRM-GPFT--- 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA-----TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            D   L+   D +    +D  W A      V  P    R S + V+S +        G G
Sbjct: 181 -DPAQLL---DTLRMNSDDVWWRAWFAEVGVAVPDDLDRGS-IHVDSQVIEGMAATAGEG 235

Query: 241 IALL-PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A+L P +   +     LV++   V     + +  YPE    + K+KAFR ++  + R
Sbjct: 236 VAMLTPRFWPFELATGRLVQLFPHV-GDGGSFWLVYPEHRHGSSKVKAFREWLMAEVR 292


>gi|107026651|ref|YP_624162.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692159|ref|YP_837692.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896025|gb|ABF79189.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650159|gb|ABK10799.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 324

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 135/297 (45%), Gaps = 25/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSF+  A+++H+S S+++R+++ +E  +G+ L +R    +TLTE G    
Sbjct: 16  MRAFVRVVETGSFSAVAKEMHVSTSTVARKVTAIEEALGVALLHRSTHSVTLTEAGHIYL 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+ + 
Sbjct: 76  ERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQLDVR 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D  I   +    + ++ R L        A P YL  C  P +  +L 
Sbjct: 136 LTDNHNDLVAGGFDLDIHEGENYLDNLVVHR-LSRNDSILCATPGYLDRCGRPATPDDLT 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGIA 242
            HN + +  + P+   D  W A V    G+ + S L   + ++     +++    G GIA
Sbjct: 195 HHNCLRY--VHPEG--DPRW-ALVS---GDTQHSVLPAGNLVTDHSELLLEATCAGLGIA 246

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT---------VYFCYPEALKNTGKLKAFRNFI 290
               ++V+D   L     + + P +          +Y  Y    +++ KL+  ++F+
Sbjct: 247 EFEIWLVRD--LLASGQLEAVLPRYRLQNRLTGEYIYIAYLANRRSSAKLRVLKDFL 301


>gi|187919630|ref|YP_001888661.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718068|gb|ACD19291.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 318

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 101/199 (50%), Gaps = 8/199 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +  + SFT AAE L++ +++ +  +  LE  +G  L  R  R L++T +G+  +
Sbjct: 8   MRTFIRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTVLLARTTRRLSVTPEGAAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++   ++  +  ++ ++   +G+LRI     +   ++   L +F   YP++ + + 
Sbjct: 68  ERCTQILADIDEMEASIRHATDNLTGRLRIEMPGAVASAIVLPALDDFHTRYPNLDLAIG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+ +D+  +  DC+I+L + +  S+L+ R+L T+     A+P YL     P  + +L 
Sbjct: 128 ISNRTVDLITEAIDCSIQLGE-LPDSNLVARQLGTLEHVTCASPAYLARYGTPTDLDDLR 186

Query: 188 KHNLITFGDLIPKCMEDFN 206
            H+ +        CM   N
Sbjct: 187 GHSAV-------NCMSPHN 198


>gi|107027728|ref|YP_625239.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693561|ref|YP_839094.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897102|gb|ABF80266.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651561|gb|ABK12201.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 327

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 1/179 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT 
Sbjct: 26  GYRFELMETFVRIVEAGSLSAAAVQLHTTQPTISRRLQALENSLGMRLLQRTTHTMRLTV 85

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   E+       + +L+ +  +P G LR+A     GQ      L +FL  YP 
Sbjct: 86  DGERCFKQAKELLASWAAFEADLRGAQEEPDGLLRVAVPHAFGQQRFVAPLAQFLRDYPR 145

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++ +L ++  D      DCAI++ +P     ++  +L  +     AAP  L     P
Sbjct: 146 VSVEWLLQDEVRDFVGSGIDCAIQVGEPT-DPGVVAIRLTKVPRFVVAAPSVLNGADVP 203


>gi|299065854|emb|CBJ37033.1| putative transcription regulator protein, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 323

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 4/251 (1%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
           V+A + SFT AA++L +S++++S++I+ LE   G+ L  R  R + LTE G  L   T +
Sbjct: 23  VLATTNSFTAAAQRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTEAGQTLVDSTRD 82

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
            Y  +      +++ + +P G +R+   + LG+  +   L  FL  YP ++I+L L ++ 
Sbjct: 83  AYETIAVHFTRVKDLAGEPRGLVRVTVPVALGRQQIVPLLPAFLQRYPGVRIELDLSDRL 142

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
             ++ +  D AIR        + +   L        A+  YL     P   Q L  H+ +
Sbjct: 143 HSLTQEGFDLAIR-HVTAAPETHVAWTLCRTQAVLVASRDYLARRGTPEHPQALVDHDCL 201

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK-- 250
            +          F         +  P   C   N+  ++ +  + G GIALLPD+  +  
Sbjct: 202 YYLRGNEPAAWSFEARGRKRGRVSVPIRGCFAANNSEAMREAALGGLGIALLPDFSAQHD 261

Query: 251 -DNPNLVRIME 260
            D   LV ++E
Sbjct: 262 IDAGRLVPVLE 272


>gi|171316915|ref|ZP_02906123.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097915|gb|EDT42734.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 302

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 74/130 (56%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            ++  L  FY VAR+GS +  AE+LH+SQ +++R++  LE  +GI LF R  RG+ LTE 
Sbjct: 1   MNFTHLLAFYEVARAGSISAGAERLHVSQPAVTREVRELEDRLGIVLFDRLPRGVALTEG 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+   S ++   +T + EL+E +   SG ++I  +  LG   +   + +F   +P +
Sbjct: 61  GKLLYEYASRIFTLADTAEKELEELAGLGSGHMKIGASATLGVFFVPEAIAQFNARHPRV 120

Query: 123 QIQLILDNKD 132
            I L + N +
Sbjct: 121 AIDLTVTNTE 130


>gi|332716927|ref|YP_004444393.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325063612|gb|ADY67302.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 299

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 122/294 (41%), Gaps = 18/294 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  LR F + A   +F   A +L ++ ++++R I+ LE E+G++LF R  R ++LT  G
Sbjct: 3   DYKALRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEAELGVQLFVRTTRQVSLTTDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +            LE  + ++  +     G+LRI+     G+ +L   L  F   YP + 
Sbjct: 63  AIFAAQIQPAVKTLEEARRDVMNAHKADEGRLRISAPTWFGKAVLPPILSGFKERYPKMG 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            ++ L +  ++I  D  D AIR+         I RK+  +     AAP            
Sbjct: 123 FEISLSDGLVNIVDDDYDLAIRISSQPSDKFTIWRKIRVVPRILVAAPGS--------RF 174

Query: 184 QELDKHNLITFGDLIPKCMEDF--NWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            E+   N +T  D +    E    NW+         I   R      N+   +      G
Sbjct: 175 VEMQHPNELTPDDCLAYSGESRRENWVLSDGGSSMTISAGR--AFSANNGEVLADMAADG 232

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +G+A+LP++ V +   +  LV + +    P   +   YP       ++ +F  F
Sbjct: 233 AGVAMLPNFHVSEHLKSGRLVHVFKGWAPPDLWLTLYYPPYQALPPRIASFSKF 286


>gi|298292013|ref|YP_003693952.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928524|gb|ADH89333.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 300

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 135/297 (45%), Gaps = 20/297 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D L VF VVA   SF  AA++L +++S++S+ +  LE  +GI L  R  R ++LT
Sbjct: 1   MEADLDALAVFAVVAEERSFRAAADRLGVTRSAVSQTMRRLEERLGIALLQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119
           E G +L    +    ++ +     +     P G+LR+A +  + ++ L G  L  F   +
Sbjct: 61  EAGERLFTDAAPALAEMRSALEAARNLRGSPRGQLRLAVS-SIAEDFLAGPMLAAFAAAH 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSS------SLIQRKLVTIHMHAYAAPHY 173
           P +++ +++ +++ DI  +  D  +RL + I+        S  QR+++        AP Y
Sbjct: 120 PAVELDIVVTDEEFDIVSEGYDAGVRLGEVIEQDMIAVPVSGAQRQIIVC------APAY 173

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIM 232
           L+    P   +EL  H  I +    P+ +  + W  T + R         +  N    ++
Sbjct: 174 LERRGAPAHPRELAAHRCIGWRP-APR-VAPYRWEFTEEGREFAVTVAPEITTNDMALMI 231

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  + G+GI    +   +   D+  LV ++E    P    Y  YP       KL+A 
Sbjct: 232 KLALAGAGITCGLEESFRPFLDSGRLVAVLEAFCPPFAGFYLYYPNRRNMAPKLRAL 288


>gi|251779575|ref|ZP_04822495.1| transcriptional regulator, LysR family [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083890|gb|EES49780.1| transcriptional regulator, LysR family [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 299

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 123/281 (43%), Gaps = 23/281 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  +LR F  +A  G  T AA++L++SQ  +S+Q+  LE E+G+ LF R +R L LT+ G
Sbjct: 2   DIRQLRYFLTIAEEGHITAAAKKLNISQPPLSKQLKLLEEELGVTLFNRTSRSLELTDAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI- 122
             L   +S++    ++T  E++  +    G L I T    G N+L   +KEF   YP I 
Sbjct: 62  ILLQNKSSQLLELYKSTVNEMKNFNNGIEGTLGIGTVCSSGINVLPQKIKEFCKQYPKID 121

Query: 123 ---------QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
                    +I  +L+N  ID+        + L         ++  L    +    +  Y
Sbjct: 122 YEIYEGNSFKIMELLNNGVIDVGFVREPFNLSLYNSFVIKDNLENNLNDYFVAIAKSKFY 181

Query: 174 LKNCREPLSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
                  + I EL    LI    + D+I           T ++   EP I C + +  ++
Sbjct: 182 NSIESNTILINELKDKPLIINRRYDDIIKN---------TCNKAGFEPHIIC-KNDDIIT 231

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271
            + +   G GI++LP       PN+   ++ +I PS   Y 
Sbjct: 232 SLSWAEAGIGISILPLTAYNILPNVNLKIKKIIEPSIESYL 272


>gi|239502559|ref|ZP_04661869.1| Putative transcriptional regulator [Acinetobacter baumannii AB900]
          Length = 300

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 113/247 (45%), Gaps = 5/247 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F +VA+  SFT AA +L  SQS+IS+ +  LE  +GIKL  R  R +  T
Sbjct: 1   MKENLNDLHTFMIVAQERSFTRAAAKLRTSQSAISQTLRNLEERIGIKLLSRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L  +      ++E    ++      P+G LRI+      Q++L   +++ L  +P
Sbjct: 61  EAGEYLLNLLQPAIEEIEHGINQISALKNDPAGTLRISADEYGIQSVLWPAVEKVLQQFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCRE 179
            I +++I D   +DI     D  +R R  + S  +I  ++   I M   A   YL     
Sbjct: 121 KISVEIISDYGLVDIVEGRFDAGLR-RGGLVSKDMIALQVSEPIQMLTVATKEYLDRYGH 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLG 238
           P   ++L +H  I     +P   E + W  T         I+   V + LS ++Q    G
Sbjct: 180 PKQPKDLVEHQCINLR--LPTHGELYRWQFTKQDKTQTVTINAKIVFTTLSPVLQAARSG 237

Query: 239 SGIALLP 245
            GIA LP
Sbjct: 238 VGIAYLP 244


>gi|53720556|ref|YP_109542.1| DNA-binding transcriptional regulator CynR [Burkholderia
           pseudomallei K96243]
 gi|76809146|ref|YP_334833.1| DNA-binding transcriptional regulator CynR [Burkholderia
           pseudomallei 1710b]
 gi|126441498|ref|YP_001060436.1| DNA-binding transcriptional regulator CynR [Burkholderia
           pseudomallei 668]
 gi|167721240|ref|ZP_02404476.1| DNA-binding transcriptional regulator CynR [Burkholderia
           pseudomallei DM98]
 gi|167817429|ref|ZP_02449109.1| DNA-binding transcriptional regulator CynR [Burkholderia
           pseudomallei 91]
 gi|167847319|ref|ZP_02472827.1| DNA-binding transcriptional regulator CynR [Burkholderia
           pseudomallei B7210]
 gi|167895908|ref|ZP_02483310.1| DNA-binding transcriptional regulator CynR [Burkholderia
           pseudomallei 7894]
 gi|167904295|ref|ZP_02491500.1| DNA-binding transcriptional regulator CynR [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912554|ref|ZP_02499645.1| DNA-binding transcriptional regulator CynR [Burkholderia
           pseudomallei 112]
 gi|167920507|ref|ZP_02507598.1| DNA-binding transcriptional regulator CynR [Burkholderia
           pseudomallei BCC215]
 gi|237813828|ref|YP_002898279.1| HTH-type transcriptional regulator CynR (Cyn operon
           transcriptionalactivator) [Burkholderia pseudomallei
           MSHR346]
 gi|254190932|ref|ZP_04897438.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199086|ref|ZP_04905501.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           S13]
 gi|254261415|ref|ZP_04952469.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           1710a]
 gi|52210970|emb|CAH36958.1| cyn operon transcriptional activator (LysR-family) [Burkholderia
           pseudomallei K96243]
 gi|76578599|gb|ABA48074.1| cyn operon transcriptional activator (LysR-family) [Burkholderia
           pseudomallei 1710b]
 gi|126220991|gb|ABN84497.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           668]
 gi|157938606|gb|EDO94276.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169656916|gb|EDS88313.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           S13]
 gi|237503868|gb|ACQ96186.1| HTH-type transcriptional regulator CynR (Cyn operon
           transcriptionalactivator) [Burkholderia pseudomallei
           MSHR346]
 gi|254220104|gb|EET09488.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           1710a]
          Length = 311

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 132/303 (43%), Gaps = 35/303 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  G+FT AAE LH+SQ ++S+QI  LE  +G++LF R AR + LTE G+   
Sbjct: 6   IRYFLAVAEQGNFTRAAESLHVSQPTLSQQIRQLEGVLGVQLFDRSARAVRLTEFGTAYA 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATT-----------IDLGQNLLQGNLKEFL 116
           R       +LE  +  + +     SG LR+A T           ID G N    NLK  +
Sbjct: 66  RHARAALQQLEAGRRAVHDVENLQSGSLRLAMTPTFSAYLIGWLID-GFNARYPNLKLTI 124

Query: 117 LLYPDIQIQLIL--DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
              P  QI+ +L  D  D+ I+ D          P+   +L    LV    H +A     
Sbjct: 125 REMPQEQIEPLLADDELDVGIAFDATQSPEIETMPLWIETL---ALVVGRDHRHA----- 176

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS 230
              R+PLS  E     LI    L+ +    F     VD    R    PR++ ++VNS  +
Sbjct: 177 -RRRKPLSPDEAAGEPLI----LLSRA---FATRGKVDQYFHRNGVTPRVA-IEVNSISA 227

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++    G    +LP  I +   +L  I  D   P  T      +    +  ++AF + +
Sbjct: 228 MLEMVRGGRIATVLPSAIAERRDDLCAIRLDPPLPQRTAALLMRKGGYRSAAMRAFVDHM 287

Query: 291 FLK 293
             +
Sbjct: 288 LAR 290


>gi|328469311|gb|EGF40257.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 309

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 139/297 (46%), Gaps = 26/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALNVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   +EL  E   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSIAMVNAAQQA-VELSAEEHTEPTGALTVAAPEAFLNSVLQPFVLPFLQRYPKIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + +ID+     D A +L  KP    +L+ +++   ++   A+P YL     P    +
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDKP--DENLVLKEISKTNLVLCASPDYLAQRGMPEHPTQ 189

Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L++H+ I   +     +      E F+ +A   R           VN     +     G 
Sbjct: 190 LEQHDCIYLAENDKDNIWSFFKEEAFHSIAVSGR---------YAVNHSQMRLNGVKAGL 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  D++VK+      +V+++ D +  S     V   Y +      +L+ F +F+
Sbjct: 241 GIGIFHDFVVKEALECGEVVKVLSDWMIKSNYHGAVAMQYAQTKYMPARLRVFLDFV 297


>gi|304311249|ref|YP_003810847.1| Transcriptional regulator, LysR family [gamma proteobacterium HdN1]
 gi|301796982|emb|CBL45195.1| Transcriptional regulator, LysR family [gamma proteobacterium HdN1]
          Length = 296

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 37/268 (13%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D  +LR F  VAR GSF+ AAE LH++Q ++S++IS LE  +G+KLF R  R + LTE
Sbjct: 6   TVDIHELRAFEAVARLGSFSIAAESLHITQPAMSKRISTLEASLGLKLFDRLGRNVQLTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L   +  +  ++E  +  L       SG+L + T+  +G + L   L+ +   YP 
Sbjct: 66  AGRALLPRSRRILAEVEECRRSLSNLQEVVSGRLSLGTSHHVGLHRLPSILRAYAATYPL 125

Query: 122 IQIQL-ILDNKDIDISMDYADCAIRL---------RKPIQSSSLIQRKLVTIHMHAYAAP 171
           +Q+ L  +D++D    +   D  I +         R  IQ     + + V  + HA    
Sbjct: 126 VQLDLQFIDSEDAFAKIMQGDLEIGIITLPSSAPGRFAIQPIWQDELRFVVGNEHA---- 181

Query: 172 HYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS- 230
             L N  E +SI EL  HN +  G+             T  R I E R     V++++S 
Sbjct: 182 --LANV-EQVSIAELAAHNAVLPGE------------NTFTRRIIERRFHDAGVSTHISL 226

Query: 231 -------IMQYCVLGSGIALLPDYIVKD 251
                  I     +G G ++LP  ++ +
Sbjct: 227 STNYLETIRMMVSVGLGWSVLPSTMINE 254


>gi|70729502|ref|YP_259240.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343801|gb|AAY91407.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 305

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 123/263 (46%), Gaps = 37/263 (14%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  KLR F  VA    F  AA +LHL+Q  ++RQIS LETE+G +LF R +R +TLT Q
Sbjct: 2   LDLRKLRYFLTVAEELHFGRAALRLHLAQPPLTRQISALETELGFRLFDRTSRTVTLTAQ 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI--ATTIDLGQNLLQGNLKEFLLLYP 120
           G         V  +++  Q+   + +   +G+L +  A++I L  +L    ++ F   +P
Sbjct: 62  GRHFLPYARAVLEQVDLAQVMAGKLAAGCAGQLALGYASSIAL-SDLFSQAIQAFAQRFP 120

Query: 121 DIQIQL-----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA 169
           D+Q+ L           I+D + IDI M       R++ P + S +    L    + A  
Sbjct: 121 DVQLTLVEGASVSQWSQIVDGR-IDIGMS------RMQPPSEQSDIQSLSLGDEPLVAAI 173

Query: 170 APHYLKNCREPLSIQELDKHNLITF----GDLIPKCMEDF---NWLATVDRPIGEPRISC 222
           +       +  +++ EL +H LI F    G  + + +E     N L     P G      
Sbjct: 174 SSDSPLAAQAQVTLAELSEHPLILFPADYGSGLNEAIEQLYRRNGLPLRPGPSGR----- 228

Query: 223 LQVNSYLSIMQYCVLGSGIALLP 245
            Q+ S ++++     G GIAL+P
Sbjct: 229 -QITSIIALV---AAGQGIALVP 247


>gi|303239384|ref|ZP_07325912.1| transcriptional regulator, LysR family [Acetivibrio cellulolyticus
           CD2]
 gi|302593170|gb|EFL62890.1| transcriptional regulator, LysR family [Acetivibrio cellulolyticus
           CD2]
          Length = 295

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 77/127 (60%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +++  +VFY  A+S SF+ AA +LH+SQS+IS+ I  LE + G +LF+R  R + LT
Sbjct: 1   MDINFELYKVFYHAAKSNSFSDAAAKLHVSQSAISQSIKNLEDKTGSQLFFRKTREIKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L +   + Y+ ++T + +L ES    SG++RI  +  + +  L   +  F+  +P
Sbjct: 61  SEGELLFKHIEQAYNFIKTAESKLLESQNLESGEIRIGVSDTICKYYLIDPIDRFIKKHP 120

Query: 121 DIQIQLI 127
            ++IQ+I
Sbjct: 121 KVKIQVI 127


>gi|323529933|ref|YP_004232085.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323386935|gb|ADX59025.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 318

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +  + SFT AAE L++ +++ +  +  LE  +G +L  R  R +++T +G+  +
Sbjct: 8   MRIFLRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTQLLARTTRRISVTPEGAAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++   ++  +  ++ ++   +G+LRI     +   ++   L +F   YP++ + + 
Sbjct: 68  ERCAQILADIDEMEASIRHATDNLTGRLRIEMPGAVASAIVLPALDDFHTRYPNLDLAIG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+ +D+  +  DC+I+L + +  S+L+ R L T+     A+P YL     P S+ +L 
Sbjct: 128 VSNRTVDLISEAIDCSIQLGE-LPDSNLVARHLGTLEHVTCASPGYLARYGTPTSLDDLR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
            H  +    + P    +  +   VD   GE R   ++VN ++ +
Sbjct: 187 GH--VAVNCMSPHNGREVAFDFEVD---GEAR--SVKVNGFIKV 223


>gi|190576388|ref|YP_001974233.1| putative LysR family regulatory protein [Stenotrophomonas
           maltophilia K279a]
 gi|190014310|emb|CAQ47957.1| putative LysR family regulatory protein [Stenotrophomonas
           maltophilia K279a]
          Length = 297

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 100/192 (52%), Gaps = 3/192 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R F  V  +GSFT AA  L +S++++++ +  LE  + ++L  R  R +++T  G+
Sbjct: 4   FEAMRAFARVVETGSFTRAAHTLQISRTTVTQLVQQLEAHLRLRLLNRTTRRVSVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   + +  +LE  +  L +++ +  G+LR+       +  L   L +F   YP+IQ+
Sbjct: 64  AYYPRIARLLAELEEVEGGLDDAATQLRGRLRVDVPGPYARLRLVPALPDFQARYPEIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++++D+  D  DC IR   P    +L+ R L  + +  +A   Y++    P   +
Sbjct: 124 DIGVSDREVDVIADNVDCVIRGGTPA-DPALVARPLGALPIGFHAGTGYVQRFGLPTDPR 182

Query: 185 ELD--KHNLITF 194
            L+   H+++ F
Sbjct: 183 ALEGPDHHMVGF 194


>gi|123187385|gb|ABM69269.1| GcdR [Azoarcus sp. CIB]
          Length = 303

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 129/301 (42%), Gaps = 24/301 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AAE+L L+QS+I RQI+ LE  +G++LF R  RG+TLTE G    
Sbjct: 11  LLAFERAARHESFTRAAEELALTQSAICRQIASLEDFLGLRLFRRTKRGVTLTEAGLSYS 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL- 126
           R  S     +E   + +     +    + +A         L   L EFL  +PD+ + + 
Sbjct: 71  RQISARLDAMERDTLSVMAHHGR-GATIELAVMPTFATRWLLPRLGEFLARHPDVTVNMN 129

Query: 127 ------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
                 +  + + D ++ + D       P   +  + R+  T       +P  L+  R  
Sbjct: 130 NRTRPFLFADTEFDAALYFGDAGW----PGTEAHFLMRENAT----PVCSPRMLQG-RTA 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+ +E+    L+      P    D  W  ++   +    ++  +   +  + Q  +   G
Sbjct: 181 LAPEEIATFPLLQ-QSTRPYGWRD--WFGSLGLQVAHD-MTGTRYELFSMLAQAAMQDMG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IAL+P ++++   D+  LV     V   +   Y   PE    T  L AFR+++   A  +
Sbjct: 237 IALIPPFLIREELDSGRLVIPCNHVYLSAKAYYLIIPERKAETASLAAFRDWLVEAAAAY 296

Query: 298 K 298
           +
Sbjct: 297 R 297


>gi|123440928|ref|YP_001004919.1| LysR family regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087889|emb|CAL10677.1| LysR-family regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 362

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 132/302 (43%), Gaps = 31/302 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T +G+  +
Sbjct: 61  MQIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITAEGTLYY 120

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E          ++P GK+RI     L +N++   L++F   YP I + L 
Sbjct: 121 HRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALRDFYQRYPHITLILG 180

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  ID+  +  DC +R   P     L  R +        A+P YL+    P+S+ +L 
Sbjct: 181 ANDSTIDLLREGVDCVLRAWLP-HDEQLAARNIGQQPQITCASPAYLEKYGIPMSLDDLA 239

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRI--SCLQVNSYLSIMQYCVLG 238
            H  + +          F+ L   D P+        E R+  S L V+   + +   + G
Sbjct: 240 GHQSVGY----------FSQLNHRDYPLEFVCQGKIENRVLPSILSVSGADAYIAAGMAG 289

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+  +P   ++       L+ ++  +  P   ++  YP      G+  A R  + +   
Sbjct: 290 LGLIQVPTAGIQGQLAQGELIEVLSHIPPPVMPLFIMYP-----PGRFLAPRVRVLI--- 341

Query: 296 DW 297
           DW
Sbjct: 342 DW 343


>gi|294084503|ref|YP_003551261.1| putative LysR family transcriptional regulator [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664076|gb|ADE39177.1| putative transcriptional regulatory protein, LysR family
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 301

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 25/262 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M ++ + + VF  VA     + AA +L + +SS+SR I+ LE  +G+ LF R+ R + LT
Sbjct: 1   MKWNINDIPVFVAVAEHAGISLAARKLGMPKSSVSRAITRLEAALGLSLFDRNTRNVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G       S +  + E     L     +PSG L +A  +   + ++ G L EF  +YP
Sbjct: 61  DEGQVFLSHASLIVEQAEAASAALAGIQKRPSGNLTVAVPMAFSREIIGGRLAEFTAVYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + + +    +++  D+ D +I      + S L  + L+   +   A+P YL+  +  
Sbjct: 121 DINLDIRVVGHPVNLMTDHIDLSIS-PDVQEDSDLYCQTLMRTKLIWVASPDYLELAKVT 179

Query: 181 LSIQELDKHNL------------ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
             I+ +  H              + F D  P      N L  +  P+ +P +        
Sbjct: 180 ADIESITAHMRFCEQRYLLRKMPVLFDDPAPASRRFLNCLGAM--PVNDPVL-------- 229

Query: 229 LSIMQYCVLGSGIALLPDYIVK 250
             + +    G GI+ +PD   K
Sbjct: 230 --LRETIKQGGGISFMPDIYCK 249


>gi|291549205|emb|CBL25467.1| Transcriptional regulator [Ruminococcus torques L2-14]
          Length = 294

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 105/203 (51%), Gaps = 14/203 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D  R+FY VA   SF+ AA+ L  +Q +I+  ++ LE ++G KLF R  RG+TLT
Sbjct: 1   MEITYDYYRIFYYVAMYKSFSKAAKVLMSNQPNITHFMNNLENQLGCKLFVRSNRGVTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G KL++  S  Y  L   + EL       SG + I+ +      LL   L  F   YP
Sbjct: 61  AEGEKLYQHVSVAYQHLHAAEAELAMERSMESGSITISASEIALHLLLLPILGRFHKQYP 120

Query: 121 DIQIQLILDNKD---IDISMDYADCAI-----RLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
            ++++L+  +       +    AD A+     + +KP++S+SL+  K + +  H++    
Sbjct: 121 GVRLRLLNHSTPEAVESVKNGLADFAVVTTPLQAKKPLKSTSLMSFKEIAVGDHSF---- 176

Query: 173 YLKNCREPLSIQELDKHNLITFG 195
             +   +P+ ++EL ++ LI+ G
Sbjct: 177 --QGEEKPIRLKELIENPLISLG 197


>gi|221197367|ref|ZP_03570414.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221204041|ref|ZP_03577059.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176207|gb|EEE08636.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183921|gb|EEE16321.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 323

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 93/184 (50%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  SGSF  AA ++ +++S++++ ++ LE  +G++L  R  R L LT++G   +   
Sbjct: 11  FVEVVESGSFAAAALRIGVTRSAVAKVVARLERRLGVRLLQRTTRQLNLTDEGHLYYEQC 70

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  T+  L     +P+G+LRI+  +  G+  +   ++  +  +P +++ +   +
Sbjct: 71  RRLLAELGDTEAALDAGRREPAGRLRISVPVLFGRQCVAPVMRRLVERHPRLEVDMSFSD 130

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D+  D  D A+R+     +++L+ R+L    M   A+P YL     P     L  H 
Sbjct: 131 RVADLIDDGFDIAVRIGVLADTTALVGRRLGVQRMGICASPAYLDRHGWPSGPDALASHV 190

Query: 191 LITF 194
            I +
Sbjct: 191 GIAY 194


>gi|218460962|ref|ZP_03501053.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Kim 5]
          Length = 298

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 131/311 (42%), Gaps = 30/311 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + SF  A E+L +++S++S+ +  LE  +G+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARSFRLAGERLGVTRSAVSQSLQRLEDRLGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119
           E G            ++      +++   +PSG LRI T   + ++ L G  L  F+   
Sbjct: 61  EAGEVFFDAVRPSVRQVRDAMQTVRDMQARPSGLLRI-TVSSIAESFLSGTLLAGFIEAC 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHY 173
           PD+++ + + +++ DI     D  +RL        +I++ ++ I +          +P Y
Sbjct: 120 PDVKLDITITDEEFDIVEAGFDAGVRL------GEVIEQDMIAIAVSQEQRQCPAVSPAY 173

Query: 174 LKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYL 229
           +K    P   ++L  H  I +    D  P     + W  T  +R         +  N   
Sbjct: 174 IKRHSRPRHPRDLQSHACIGWRPRPDTAP-----YRWEFTENNRDFDVAVDPAVTTNDMS 228

Query: 230 SIMQYCVLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            +++    G+GI          Y   D   LV ++ED   P    Y  YP   +   KL+
Sbjct: 229 MMIRLACAGAGITFGMVETFQPYF--DRGELVPLLEDFCPPFPGFYLYYPRRERQPLKLR 286

Query: 285 AFRNFIFLKAR 295
           A    I   AR
Sbjct: 287 ALVEHIRKSAR 297


>gi|114564032|ref|YP_751546.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335325|gb|ABI72707.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 313

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 136/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G+ 
Sbjct: 6   EPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGNL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++Q
Sbjct: 66  LYLQGEELLRDAEQAVSSVHNLNDATRGVLKVGISQSFGTMHIIPALPAFMARHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+         ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLVASPGYIAQHGNISRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +HN + +     +  E   W         E  +S   +V++  ++    V G GI  L
Sbjct: 185 LVEHNCLVYQG---EWHEHSMWQFKKGEDYCEIGVSGNFRVDNAPALKSAAVSGLGIVYL 241

Query: 245 PDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++D      LV ++ D  +T +  +   YP       K+ AF +FI
Sbjct: 242 ASYLMEDEIAQGTLVPLLPDWQLTHNLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|330966854|gb|EGH67114.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 302

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  +A   SFT  A    LS ++++R ++ LE+ +GI L  R  R + LTE G + 
Sbjct: 6   EMTLFAALAGQTSFTGVARHFGLSTATVTRAVASLESRLGILLVVRTTRNMRLTEAGQRF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L+  +         P+G L +      G   +   L  FL  YP + I+ 
Sbjct: 66  AEDCRRLLTELDEAENAAAGVHALPAGTLTVTAPQMFGALHVTPVLTRFLNEYPAVDIRA 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL ++ + +  + AD A+R+   ++ SSL    + ++     A+P YL     P    +L
Sbjct: 126 ILVDRVVSMLDEGADVAVRI-GALRDSSLTAIPVGSVRRMVCASPAYLAQHGTPRHPDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H+ ++     P+     +W   VD       ++  L + S+ + +   +   G+  +P
Sbjct: 185 QLHSTVSTS--APE--RPPHWAFRVDGQDHSVNVASRLSLTSFQASINAALQDWGLTQVP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            Y +++   N  LV ++ED       V+  Y E  + + K+++F +F     R+
Sbjct: 241 HYQIREHLQNGRLVCVLEDFEIAPEPVHVVYSEGRRGSSKVRSFVDFCVSALRE 294


>gi|322614930|gb|EFY11855.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322619370|gb|EFY16250.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623182|gb|EFY20024.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322628472|gb|EFY25260.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634880|gb|EFY31611.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638556|gb|EFY35251.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640909|gb|EFY37557.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322645362|gb|EFY41890.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651755|gb|EFY48127.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322654347|gb|EFY50669.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661188|gb|EFY57414.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322662685|gb|EFY58892.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322667705|gb|EFY63865.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671883|gb|EFY68004.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322677072|gb|EFY73136.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322680266|gb|EFY76305.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685305|gb|EFY81301.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323194151|gb|EFZ79349.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323199365|gb|EFZ84459.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203499|gb|EFZ88523.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205882|gb|EFZ90845.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323217209|gb|EGA01930.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323220778|gb|EGA05218.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225260|gb|EGA09498.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323232071|gb|EGA16178.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234598|gb|EGA18685.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238051|gb|EGA22110.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323243348|gb|EGA27367.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323253656|gb|EGA37483.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323259019|gb|EGA42668.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323260443|gb|EGA44056.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323266469|gb|EGA49956.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271193|gb|EGA54620.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 299

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 118/247 (47%), Gaps = 9/247 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 5   EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP    +
Sbjct: 65  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYP----E 120

Query: 126 LILDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           LIL + D   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++
Sbjct: 121 LILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENL 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L KH+ +  G L  +     +W  T +      R+   L V+   + +Q  + G G+ 
Sbjct: 181 DDLQKHHAV--GYLNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLGLI 238

Query: 243 LLPDYIV 249
            +  Y+V
Sbjct: 239 RVASYLV 245


>gi|307305190|ref|ZP_07584939.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306902530|gb|EFN33125.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 301

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 139/294 (47%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++++F  +    SF  AA  L L++S+ +  I  LE +VG++L  R  R +  T  G+ 
Sbjct: 9   DRMQLFIRIVERRSFAAAASDLGLARSTATEAIKQLEHDVGVRLLERTTRHVAPTLDGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +  +++  +   ++   +  G LR+     L +  L   L EFL  YP + +Q
Sbjct: 69  FYQRCIAILAEVDEAENAFRDMQAR--GLLRVDAHPLLTRTFLLPRLTEFLDRYPLLDLQ 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC IR  + I  S LI R+L  I     A+P Y++    P S   
Sbjct: 127 IGQGDRLVDLVREGIDCVIRAGE-IADSGLIMRRLGMITEITCASPAYIERHGIPHSPDA 185

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           +D H  + F     G ++P    +F   ++V R +  P   C L VN+  ++    + G 
Sbjct: 186 MDGHRAVGFISSRTGQIMPL---EFTMGSSV-RYVTLP---CRLTVNNSDTMNDLALRGF 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+   P Y ++   D   LV ++ +   P   +   YP+  + + +++ F +++
Sbjct: 239 GLIQAPRYRLQRDLDEGGLVEVLAEFPPPPTPLSALYPQNRQLSPRVRVFLDWV 292


>gi|323530034|ref|YP_004232186.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323387036|gb|ADX59126.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 302

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 120/271 (44%), Gaps = 30/271 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   LR F  VA  G FT AA +LH+ Q  +S+QI  LE E+G  LF R  RG+ LT  
Sbjct: 1   MELRHLRYFLAVAEEGQFTRAASRLHIQQPPLSQQIQELEQELGFALFVRQPRGVVLTAP 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLG-QNLLQGNLKEFLLLYPD 121
           G  L      V  +L+   I+ +  +    G +R+A T       L    ++ F  LYP+
Sbjct: 61  GETLAARARSVLLELDNAVIQARRVAQGHIGTVRVALTSSAAFHPLTPTAIRNFRELYPE 120

Query: 122 IQIQLILDNKDIDISM---DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYLKN 176
           + +++   N    I M   D AD AI LRKP+ +   ++ +L+         P  H L +
Sbjct: 121 VAVEMTEVNAADIIEMMVEDRADAAI-LRKPVHAPEGLRFELLAEERMLLVLPVGHRLIS 179

Query: 177 CREPLSIQELDKHNLI---------TFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVN 226
            R  +++++L   + I          + D I  C           R  G EP +   +V 
Sbjct: 180 SRA-VALEKLADESFIFVRRPGAPGMYADFIRAC-----------RSKGFEPHV-VEEVP 226

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKDNPNLVR 257
             ++ +     G GI+L+P  + + +   VR
Sbjct: 227 RMVTAINLVAAGGGISLVPASMHRYHQESVR 257


>gi|167579499|ref|ZP_02372373.1| LysR family regulatory protein [Burkholderia thailandensis TXDOH]
          Length = 293

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 117/260 (45%), Gaps = 14/260 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF+ A E+LH++  +ISRQI+  E  +G  +F+RH + + LTE+G +  
Sbjct: 11  LRAFEAAARHESFSAAGEELHVTHGAISRQIAAFEAWLGKPVFHRHGKRVRLTEEGRRYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  +     +L+E+    +  LRI          L   L  F    P+++++L 
Sbjct: 71  ATVEAAFDSIARATGQLRETGA--ARVLRINALPTFAMKWLLPRLSRFQREVPNVELKLS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186
             N  +  S+D  D AIR R P +       + +   +    +P  LK  R P+ S  +L
Sbjct: 129 TSNAPLG-SLDGFDVAIR-RGPGRWPGCTSGRFLDESVIPVCSPALLK--RTPIASADDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H L+   D  P    +  W A    P+ G  + S    + +   +Q  V G G+AL P
Sbjct: 185 ARHVLL-HSDTRPNAWRE--WFAAACAPMKGRKKQS---FDHFYLALQAAVDGLGVALGP 238

Query: 246 DYIVKDNPNLVRIMEDVITP 265
             ++ D     R++  +  P
Sbjct: 239 LPLIADELASGRLVTPLPGP 258


>gi|150377923|ref|YP_001314518.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032470|gb|ABR64585.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 295

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 135/305 (44%), Gaps = 17/305 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA   +F  AA++L +++S++S+ +  LE   G  L  R  R + LT
Sbjct: 1   MQIDMNLLPLFVAVAEEDNFRAAADRLGVTRSAVSQGVRRLEDAFGTTLVTRTTRSVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLY 119
           E G +L    S+    +  + ++   +  +P G LR+A T  + +  L G L   F   +
Sbjct: 61  EAGERLREALSQPLSDI-ASALDRVAAEDEPRGHLRVAVT-SIAERFLSGPLIASFAEAH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + + + +++ DI     D  +RL + I+   +           A AAP YL     
Sbjct: 119 PKVTMDVTVTDEEFDIVAAGFDAGVRLGEVIEQDMIAVPLTGDQREMAVAAPSYLAAHGT 178

Query: 180 PLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           PL  +EL  H  + +    ++ P   E        D  + EP+I+    N    +++  +
Sbjct: 179 PLHPRELVHHRCVGWRRAPNVAPYRWEFEENGIPFDVAV-EPQITT---NDLRFMLRSAL 234

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+GI    +   +   ++  LV ++ED + P    Y  +P+      K++A    +   
Sbjct: 235 CGAGITFATEETFRPFVEDGRLVPLLEDFLPPFPGFYLYFPQRRNMAPKMRALIEHV--- 291

Query: 294 ARDWK 298
            R W+
Sbjct: 292 -RRWR 295


>gi|84386467|ref|ZP_00989494.1| Hypothetical transcriptional regulator, LysR family [Vibrio
           splendidus 12B01]
 gi|84378572|gb|EAP95428.1| Hypothetical transcriptional regulator, LysR family [Vibrio
           splendidus 12B01]
          Length = 285

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 113/245 (46%), Gaps = 14/245 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AA   +LS + IS+ +  LET +  +L +R  R  +LT+ G   +
Sbjct: 7   MKVFVYVVEQGSFRSAANHFNLSATMISKHVHSLETSLNSQLIHRTTRKQSLTDSGQLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   +   +  +Q    +P G ++I   +  G  +L   + +FL   P I ++L+
Sbjct: 67  RECKRILEDISNAENLIQTLENQPQGTVKINCPVTYGNKVLAPIVAKFLAQQPTINVELM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N  +D      D  +R+ + +  SSL+ R L    M   AAP YL    E   +++L 
Sbjct: 127 LNNDLVDPYSSDIDLIVRIGE-LSDSSLVARYLGDYEMCYCAAPAYLNQHAEIRVLEDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246
           +H  + F          ++  A    P  E R+  +  N    +++Y  L G G+ L P 
Sbjct: 186 QHPSLGFS---------YSSQAPHATPNKE-RVRLMSNNG--DVLRYAALQGVGVLLQPT 233

Query: 247 YIVKD 251
            +V +
Sbjct: 234 ILVAE 238


>gi|110635272|ref|YP_675480.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286256|gb|ABG64315.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 297

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 19/295 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  +A   S   AA+ L ++ S++S  + G+E  +G++LF R  R +  TE G +
Sbjct: 7   NDLSVFLAIAHHRSIRKAADMLGVTPSALSHSLRGIEERLGVRLFNRTTRSVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +  +  +E    +L      P+G LRI       + +L   +  FL  YP++ ++
Sbjct: 67  LFDRIAPAFRDIEDALEDLNTFRDTPTGSLRINAGRSSAETVLIDVVARFLTAYPNVSVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQ 184
           ++++N  +D+     D  +R  + + +  +I   L     +AY A+P + +    P   +
Sbjct: 127 IVVENALVDMVSQGFDAGVRFGE-VLAQDMIAVPLGPPQRNAYVASPAFFRRYSMPTHPE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLG 238
           +L +   I F     +      +    +R   E     ++V   L++      ++  + G
Sbjct: 186 QLKELPCIRF-----RFQSGRYYAWEFERDGAE---LAVEVEGPLTVGEQDLGIRAALRG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +GIA   +  V D      LVR++ED        +  YP   +    L+AF +F+
Sbjct: 238 TGIAFAFEDQVGDLLAEGKLVRVLEDWCPYYKGYHLYYPSRRQLPATLRAFVDFV 292


>gi|226952797|ref|ZP_03823261.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226836418|gb|EEH68801.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 301

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A  G+ + AA+ L+ S++ +SR +  LE     +LF R+ R ++LT  G K  
Sbjct: 11  IQVFVCIAHQGNLSKAAQHLNYSKAMVSRYLEHLEATFSTRLFQRNTRKVSLTPAGEK-- 68

Query: 68  RVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              + +Y +    Q +L E    P   SG +R    + L Q  +   +K+F   YP I  
Sbjct: 69  ---ALLYCENILQQQQLLEGLAAPEQHSGTIRFTCGLFLFQLGVNECIKQFKKRYPHIHF 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
            + L    ID+     D A+R+ + + +  LI R +  I     A PHYL++   PLS  
Sbjct: 126 DVYLTENTIDLMDAQVDLALRITQKV-AEGLIARPVCQIESIFCAHPHYLQD-HTPLSHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L +H      D I     +  W    T  +P   P     + N  +++ Q C+   GI
Sbjct: 184 SQLIQH------DCIAHHTHNQYWTLFDTDQQPQNYPLNVTFKSNDVIALYQMCLKAEGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           A+LP  +V+ +     L ++  D   P  T+   Y
Sbjct: 238 AMLPTLLVRQDIAQQRLQQVFTDFSAPDLTLSLVY 272


>gi|226198795|ref|ZP_03794359.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254195223|ref|ZP_04901651.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|169651970|gb|EDS84663.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|225929235|gb|EEH25258.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 448

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 144 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 203

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 204 NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 259

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 260 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAV 318

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L   + I  G L       ++      R +       L+V S L   Q  + G+
Sbjct: 319 PRHPDDLPGSHWIGHGGL---ANLSYSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGA 375

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 376 GISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 428


>gi|152981622|ref|YP_001353551.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281699|gb|ABR90109.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 307

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 19/257 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A +GSF+ AA +L L+ +++ + ++ LE  + ++LF R  R LTLTE G +     
Sbjct: 10  FVRSAEAGSFSEAARRLGLTSAAVGKNVARLEANLSVRLFQRSTRRLTLTEAGERFLAEV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           S     +++    L  +  +P+G L+I+     G++ +   L +FL  YP I      DN
Sbjct: 70  SGGLAVIQSAVANLASADGQPAGTLKISMGTGFGRHYIVPLLGDFLTRYPAITPDWHFDN 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D AI     +    ++ R L   H    AAP Y        S  EL +H+
Sbjct: 130 RRVDMIAEGFDAAIGGGFEL-PPGVVARTLGPSHGILVAAPDYFDTHTPLASPSELGQHD 188

Query: 191 LITF-----GDLIP-----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSI--------M 232
            I       G + P     K  E       V   + +P  +C    S L I        +
Sbjct: 189 GIFIRSPQTGRIRPWSLRNKGNEQAPVAMRVRMTMSDPDAACEAAQSGLGIALVSVPNAL 248

Query: 233 QYCVLGSGIALLPDYIV 249
           +Y   G    +LPD+ V
Sbjct: 249 RYLESGRLKRVLPDWYV 265


>gi|149918293|ref|ZP_01906784.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149820819|gb|EDM80228.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 304

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 134/290 (46%), Gaps = 29/290 (10%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           +F+  AE+L +SQS++S+ ++ LE E+G++L  R  R   +TE G + ++   ++     
Sbjct: 18  TFSAVAEELRVSQSTVSKWLAALEDELGVQLMERTTRSRRVTEAGERFYQRARDILAAYA 77

Query: 79  TTQIEL-------QESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
               EL       +  + +P  G++R++  +  G+  +   + +F+  +P ++++L+ ++
Sbjct: 78  DASAELAPARSGRRARAREPLRGRIRVSVPVVYGRLFILPKVAKFMRRHPAVEVELVFND 137

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK-- 188
           + +++  D  D A+R+  P+   S   RKL     H  A+P YL+        + L +  
Sbjct: 138 RYVNLVEDNFDVAVRVGIPVD-VSFKARKLGESRRHLVASPGYLERGPALTRPEHLREHC 196

Query: 189 ---HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
              H  +  GD          W A V              N+  +++     G G+ALL 
Sbjct: 197 CLVHTNLRVGDTWALRRGPKTWRAPVR--------GRFAANNSEALLTLARRGIGVALLA 248

Query: 246 DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG-----KLKAFRNFI 290
           D++V+ +    R+    + P + +     +AL   G     +++AF +F+
Sbjct: 249 DWLVEADLRAGRLR--TVLPDYELPPAPVQALTAPGRHPHPRVRAFLDFL 296


>gi|207739776|ref|YP_002258169.1| hypothetical protein RSIPO_04480 [Ralstonia solanacearum IPO1609]
 gi|206593158|emb|CAQ60064.1| hypothetical protein RSIPO_04480 [Ralstonia solanacearum IPO1609]
          Length = 310

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 15/248 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LE ++G +L  R +  +++T  G 
Sbjct: 9   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAELEAQLGTRLLQRSSHRVSVTPVGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + L+ G L EF   +P ++I
Sbjct: 69  AVYRHAREMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLVSGWLAEFAQAHPKLRI 128

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L + N  +D+     D AIR    P+ S  ++ R L         +P  +    EP S 
Sbjct: 129 ELEVSNPYVDLIEQRIDVAIRAATGPLPSRDVVARHLGASPRVLVGSPALIARVGEPDSP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYLSIMQYCVL 237
             LD    +  G L  +C    +W+    R      PI  PR++    ++ +++ +  + 
Sbjct: 189 AGLDALPCLGQGTLA-RCR---DWVLLDARGHRHAMPI-RPRMA---TDNLIALREAAIA 240

Query: 238 GSGIALLP 245
           G G A+LP
Sbjct: 241 GLGFAVLP 248


>gi|170690695|ref|ZP_02881861.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143944|gb|EDT12106.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 292

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 18/257 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G  
Sbjct: 8   NALRAFESSARHLSFTRAALELNVTQAAVSQQVRSLEERLGTTLFKRLPRGLAMTDEGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V ++ + ++E    + +         + +  T  +G   L   LK F   +P ++++
Sbjct: 68  LRPVLTDAFDRIEAVLKQFEGGHFHEVLTVGVVGTFAVGW--LMPRLKSFREAHPFVELR 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N  +D++ +  D AIR        SL  R L+   +     P        P  +  
Sbjct: 126 LLTNNNLVDLATEGLDFAIRFGDGTWPGSLATR-LLDAPLALLCTPEIAARLSTPADLA- 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            D+  L ++     +  +  NW A      RPI  P     ++     +++  + G+GIA
Sbjct: 184 -DQTLLRSY-----RADDWSNWFAAAGIPPRPIRGPVFDSSRL-----MVEAAMQGAGIA 232

Query: 243 LLPDYIVKDNPNLVRIM 259
           L P  +     N  R++
Sbjct: 233 LAPALMFDREINTGRLV 249


>gi|307130356|ref|YP_003882372.1| transcriptional regulator [Dickeya dadantii 3937]
 gi|306527885|gb|ADM97815.1| Transcriptional regulator [Dickeya dadantii 3937]
          Length = 306

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 1/190 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  VAR+G F  AA    +S S +S  +  LET++ I+L +R  R +  T
Sbjct: 1   MNIDLKDLEAFVAVARAGGFRDAARANGVSASGLSEAVRRLETQLAIRLLHRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L         ++E     +     +P+G LR+   +   + +L G +  FL  YP
Sbjct: 61  EAGQSLLARLVPALTEVENALDVVNGFRDRPTGTLRLNVPVSAARLVLPGLIAPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSL-IQRKLVTIHMHAYAAPHYLKNCRE 179
           DI+++++++   +D+     D  IR  + ++   + +     +  +   A+P Y   C  
Sbjct: 121 DIKLEVVVEESFVDMLAAGCDAGIRYGERLEQDMIAVPIGPRSQRLAIAASPAYFARCGR 180

Query: 180 PLSIQELDKH 189
           P   ++L  H
Sbjct: 181 PAHPRDLVGH 190


>gi|149907575|ref|ZP_01896322.1| putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
 gi|149809245|gb|EDM69174.1| putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
          Length = 302

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 127/295 (43%), Gaps = 23/295 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT A+E+L+++Q+++S QI  LE  +GIKLF R  R L LTE+G  
Sbjct: 9   NSLRVFEAAARHSSFTRASEELYVTQAAVSHQIKALEEYLGIKLFRRQNRALFLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 + +  L      L     K  G L ++         L   L  F  L+PDI ++
Sbjct: 69  YFLDIKDTFSSLVDATERLLARGAK--GSLTVSLQPSFAIQWLVPRLSLFSELHPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   + D     D  D AI   +  +   L  +KL T ++    +P  L   +   +  +
Sbjct: 127 IKAVDMDDGSLTDDVDVAIYYGRG-KWKDLNAQKLHTEYLVPVCSPRLLNGVKPLKTPGD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN-----SYLS-IMQYCVLGS 239
           L  H L+             +W A       +  I+ + VN     S+ S ++Q  + G 
Sbjct: 186 LKLHTLL-------HDSSRRDWTAW----FKQGNITDINVNQGPIFSHTSMVLQAAIHGQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+AL    + +   D   LVR   +V+      Y    E     GK+ AFR+++ 
Sbjct: 235 GVALGHSVLAQPEIDAGRLVRPFTEVLVSKNAYYVVCREEQDELGKIVAFRDWML 289


>gi|299531969|ref|ZP_07045369.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298720144|gb|EFI61101.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 295

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 128/296 (43%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V   GSF+ A  +L LS S++S+ I+ +E  +G++LF R A  + LT++G 
Sbjct: 4   FGEMTVFLRVIEEGSFSGAGRRLELSPSAVSKLIARMEARLGVRLFERIAGAIRLTQEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  V   +E  +  ++ +  + SG +RI T +   + L+   L   L  +P + +
Sbjct: 64  HFRIASQRVVQAMEQAEACVRVADAEISGTVRIHTALTTAKYLVAPRLHLLLDRHPRLHL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +L  +  D      D AI   +P +  +LI R L+       AAP YL+    P   +
Sbjct: 124 DFVLGTERGDFVRQGIDVAIHSGRPTE-QTLIGRPLMLRPWVIAAAPQYLQRFGHPEQPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L +H  + F          F+    L T+D P      S +  N    +    +LG G+
Sbjct: 183 DLLQHRCLNFTIRTQWNRWTFHEEGGLKTIDIP------SHIGANQGELLRSLALLGHGV 236

Query: 242 ALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             L  + +  +       P L +  E      F  Y  YP       +++A  +F+
Sbjct: 237 VRLAHFHIAADLERGTLVPLLPQFQERSEDDRF--YLLYPRGRSLAPRVRAVLDFL 290


>gi|254258650|ref|ZP_04949704.1| gp58 [Burkholderia pseudomallei 1710a]
 gi|254217339|gb|EET06723.1| gp58 [Burkholderia pseudomallei 1710a]
          Length = 297

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 129/288 (44%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L  F   AR G+FT AAE+L+++Q ++S+Q+  LET +G  LF R A+ L LT  G +  
Sbjct: 12  LVFFDAAARHGNFTRAAEELNVTQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV + +   +E T + ++E +      L IA         L   + EF   +P++ +++
Sbjct: 72  DRVHAILADCVEATALVMKEQTPH---SLTIACASGTATLFLADRIAEFSAEHPEVSVRI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++     +++    D  +   + +    +    ++   +HAY AP +L   R P   Q+L
Sbjct: 129 LVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIIAEDVHAYCAPTFLAGRRVP--PQDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L+   +   + M   +W       IG      +  NSY  ++Q  + G G  L   
Sbjct: 187 MEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILGWK 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +++    ++  LV   +   +        +P   ++T  +  FR ++ 
Sbjct: 247 HMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLL 294


>gi|229103023|ref|ZP_04233712.1| Transcriptional regulator, LysR [Bacillus cereus Rock3-28]
 gi|228680438|gb|EEL34626.1| Transcriptional regulator, LysR [Bacillus cereus Rock3-28]
          Length = 305

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 136/287 (47%), Gaps = 28/287 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   L  F  LYP
Sbjct: 67  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQYGSLTIGSLLTVVNYLLPPTLLHFNNLYP 126

Query: 121 DIQIQLI----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I++ ++          L   ++DI + +         P+Q   ++   L    +     
Sbjct: 127 NIELSVLGLRTGEIREKLLQNELDIGITFL--------PVQDKEIVSIPLYKSELTLVIP 178

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
             +  +  + +SI+EL  + LI    L+PK       L T  +         L++++  S
Sbjct: 179 IGHPLSEFDHVSIKELQNYPLI----LLPKNFYLTELLTTYCQNFSFKPKPILEISTMES 234

Query: 231 IMQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           ++Q    G GI +LP    D++  +N   ++I ED  TP+  +   Y
Sbjct: 235 LIQMVSKGMGITVLPKPYIDFLQNENIQAIKI-EDP-TPTIDIGLIY 279


>gi|183599122|ref|ZP_02960615.1| hypothetical protein PROSTU_02575 [Providencia stuartii ATCC 25827]
 gi|188021346|gb|EDU59386.1| hypothetical protein PROSTU_02575 [Providencia stuartii ATCC 25827]
          Length = 300

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 6/189 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D + LRVF  VA  G+F  AA+QL +  S++SR I  LET++  +L  R  R + LT
Sbjct: 1   MSVDLNLLRVFVSVASQGNFARAAQQLSMPTSNVSRSIKQLETQLNCRLIERTTRNMRLT 60

Query: 61  EQGSKLHRVTSEVYHKLET--TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           EQG  L + +  +Y +L+   +QI  +E   + +G LR+    + G  LL   + +F LL
Sbjct: 61  EQGEILWKHSQNLYAELDDILSQISHRE---RLTGTLRLTIPSETGSLLLADIITDFALL 117

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNC 177
           +P + +        +D+  D  D  +   +     S    KL+        AAPH ++  
Sbjct: 118 HPQLTLHCDTQLMPLDVINDDIDLLLTFHRGELGDSSYHSKLIKAWPSVVVAAPHLIEQT 177

Query: 178 REPLSIQEL 186
            +P ++ EL
Sbjct: 178 GKPKNLTEL 186


>gi|50086594|ref|YP_048104.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49532568|emb|CAG70282.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 308

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 120/260 (46%), Gaps = 16/260 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           ++VF  +A+ GS T AA+QL+ S++ +SR +  LE    ++LF R+ R ++LT  G K L
Sbjct: 18  IQVFVTIAQQGSLTKAADQLNYSKAMVSRYLDHLEHVYSVRLFQRNTRKISLTPYGEKAL 77

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H   + +        +   E   + SG +R+   + L Q  L   L+ F   YP+IQ  L
Sbjct: 78  HYCENILQQHNLLHDLAAHE---QQSGVIRLTCGLFLYQLGLNRCLRAFKTEYPEIQFDL 134

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L    +D+     D A+R+ + + +  LI R +  I     A P YL          +L
Sbjct: 135 SLTENALDLIDGNIDLALRITQKV-ADGLIARPIFDIASTFCAHPDYLAQYPTLSHPSQL 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H  IT             W  T +  +P   P  S  + N   ++   C+   GIA+L
Sbjct: 194 MQHQCITHQS------HSQYWTMTDNEQQPQNYPINSSFKSNDVNALYDMCLHAQGIAML 247

Query: 245 PDYIVKDN---PNLVRIMED 261
           P  +VKD+     L+RI+ D
Sbjct: 248 PTLMVKDDLAAGRLIRILPD 267


>gi|194291656|ref|YP_002007563.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225560|emb|CAQ71506.1| TRANSCRIPTION REGULATOR, HTH lysR family; putative ttuA activator
           [Cupriavidus taiwanensis LMG 19424]
          Length = 307

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 126/277 (45%), Gaps = 16/277 (5%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           L +S +++S+++  +E  +G+ L  R  R ++LT +G  L      +  +L+  +  L  
Sbjct: 31  LGISTAAVSKRLGQMEARIGMPLVIRTTRRMSLTPEGEVLLEHARRILGELDDLEQLLTS 90

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
           +  +PSG LR+  T+  G+  +   + ++   YP++ +QL L      ++ D  D  +R 
Sbjct: 91  AKSRPSGLLRVNATLGFGRMHVAPVISDYSRRYPEVDVQLQLSADPPPLTEDAFDVCVRF 150

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
            +P   + ++ RKL        A+P YL+    P    +L +HN I     I +  + + 
Sbjct: 151 GEP-PDARIVARKLAPNRRLLVASPGYLRKHGTPQVPADLPRHNCIG----IRQGSDAYG 205

Query: 207 -WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGSGIALLPDYIVK---DNPNLV 256
            W  T  R    PR   + V   L+       + + + G GI L  ++ V     +  LV
Sbjct: 206 VWRLTAIRG-ARPRTEAVHVRGNLTTNDGEIAVNWALEGHGIVLRAEWDVDRYLRSGRLV 264

Query: 257 RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +++    TP   +Y  Y +  + + +++ F  ++  K
Sbjct: 265 QVLPQYATPEANIYAVYQQRHQLSSRIRLFVEYLAEK 301


>gi|198042726|gb|ABV83043.3| LysR transcriptional factor [Stenotrophomonas maltophilia]
          Length = 288

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT AA +L +SQ+++S QI GLE  +GI+LF+R  RG+ LT++G+ 
Sbjct: 9   NALRAFEAAARHQNFTRAALELCVSQAALSHQIRGLEDRLGIRLFHRLPRGVALTDEGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+ V +E + ++            +    L +  T   G   L   L  F   +PDI+++
Sbjct: 69  LYPVLNESFERISANIARYTGGPAREVLTLGVVGTFATG--WLLPRLAAFEAAHPDIELR 126

Query: 126 LILDNKDIDISMDYADCAIRL 146
           L   N  ID++ +  D AIR 
Sbjct: 127 LQTHNNRIDLAGEGLDLAIRF 147


>gi|329999414|ref|ZP_08303422.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328538338|gb|EGF64475.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 303

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 6/202 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  W+  R F  V + GS + A+  L+++Q +  R I+GLE  +G  LF R   GL  T+
Sbjct: 4   SIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLLATD 63

Query: 62  QGSKLHRVTSEVY----HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             +   RV +E        LE T         +  G +R+A +  +G  +L   +     
Sbjct: 64  A-ALALRVHAEAMDNTARALERTAANFSRDRAELRGVVRVAASEVVGAEVLPPLVARLRQ 122

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P+I I+L+L N+  D+    AD A+R+  P Q   LI R+L  I +  +A   YL   
Sbjct: 123 ACPNIVIELMLSNRFQDLLHREADIAVRMVAP-QQEQLIARRLGRIELGLHATAAYLTRQ 181

Query: 178 REPLSIQELDKHNLITFGDLIP 199
             P ++ +L  H LI F    P
Sbjct: 182 GLPTTLDDLASHALIGFDSATP 203


>gi|261252079|ref|ZP_05944652.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260935470|gb|EEX91459.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 299

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 133/289 (46%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V AR  S++ AAE+L +SQ+++S++I  LE  +G KLF R  R + LTEQG  L 
Sbjct: 11  LRYFEVAARLNSYSRAAEELFISQAAVSQKIRQLEDGLGCKLFVREGREMRLTEQGKTLF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S  +  + +   ++Q   V+  G L +++T       L   L +F   +P+I I++I
Sbjct: 71  KHVSTGFESIVSGLNQIQSEPVE--GLLCVSSTPSFASRWLLPRLWKFSTQHPNIPIRII 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS---LIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
                 ++    AD AI   + ++ ++   L +  L    ++ + +P+ L    E  S +
Sbjct: 129 TSCDAPNLKQGDADLAIWQGQELELNNNLKLHKEFLFEETIYPFCSPN-LAETIELSSPE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L K  LI +           +W A     + +  +  + V+++   M   + G G  L 
Sbjct: 188 QLLKTWLIHYES---GGYPWQSWFAQAGVAMNKESVQWMDVSTFDHAMNAVMAGHGACLA 244

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D +  D      L++  E  +TP       Y +      ++ AF N++
Sbjct: 245 SDSLANDYVERGLLIKPFEIGMTPGIQFNLFYDDESPRRQRIAAFTNWL 293


>gi|149925523|ref|ZP_01913787.1| Transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
 gi|149825640|gb|EDM84848.1| Transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
          Length = 298

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 142/298 (47%), Gaps = 18/298 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F ++ R GS + AA  ++++  + + +++ +E  +G +L  R  R ++LT +G 
Sbjct: 7   FSELEFFVLLNRLGSLSAAARAMNITPPAATMRLASMEKRLGARLLNRSTRKISLTPEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +  +L+     + +S   P G LR+   +  G+ ++   + EF   YP+++I
Sbjct: 67  IYLQHAIRLVAELQELDELILDSRRAPRGILRVNAPLGFGRTIIAPLVSEFTSEYPEVEI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ ID+     D AIR  + +  + +  R++++      AAP YL+    P ++ 
Sbjct: 127 QLEVTDRPIDLIETGFDLAIRFGE-LPDNRINARRIMSNRRFMCAAPAYLEKHGVPKTLA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLG 238
           +L KH  I     + +  +D      V R +   +   ++V+S LS      +  + + G
Sbjct: 186 DLTKHRCI-----VHRQNDD---AYGVWRFLVNGQTEFVKVHSALSSNDGDIVQGWALDG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI +  ++ V    ++  L R++     PS  +Y  YP       +++ F +F+  K
Sbjct: 238 QGIVIRSEWDVTKYLESGRLRRVLPAFKLPSADLYAYYPSKQNQAARVRVFIDFLVKK 295


>gi|304403853|ref|ZP_07385515.1| transcriptional regulator, LysR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304346831|gb|EFM12663.1| transcriptional regulator, LysR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 301

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 115/265 (43%), Gaps = 7/265 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA+    T AAE+LH++QS++SRQI  LE E+G+KLF +  R L LT  G   
Sbjct: 5   QLHYFVKVAKKEHVTQAAEELHVAQSAVSRQIHQLEEELGVKLFLQKGRNLQLTPAGQLF 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI-- 124
            +    +   LE   IE+ E      G++R+     LG +L+   +  F   +P ++   
Sbjct: 65  LKRAEVILSDLEKAVIEIHEFMDPERGEIRLGFPHSLGMSLVPQVVAAFRKQHPKVKFRF 124

Query: 125 -QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            Q +      D+     D A     P    S+    L+T H+ A   P +    +E + +
Sbjct: 125 KQGMFPTLLRDMVQGDIDLAFISPFPDDHQSVCGEVLLTEHLLAILPPSHPLAGKEEIDL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL     + F +     +    W A ++     P++   +     +I      G G++L
Sbjct: 185 AELKDETFVMFSE--GYSLRPIVWEACLEAGF-VPKVG-FEGEETDTIRGLVAAGMGVSL 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT 268
           LPD  ++    L      + TPS T
Sbjct: 241 LPDMALRQTGPLQPAKVRIRTPSVT 265


>gi|197337127|ref|YP_002158444.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314379|gb|ACH63828.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 290

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 17/203 (8%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW + ++ +  V   GSF  AA QL+ S S+IS++I+ LE  VG++L  R  R +  TE
Sbjct: 1   MDWIESVKSYIKVVEEGSFNAAAYQLNTSGSAISKRINWLEERVGVQLLTRTTRSVHQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++       + +    E +  +  P+G L+I  T+ +G   +   L EFL  YP 
Sbjct: 61  AGLLFYQRARLQLDQWQHLVDETRAINQTPAGLLKIGATLAVGSKFIIKYLDEFLATYPK 120

Query: 122 IQIQLILD--------NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
           I++QLI          N D+ IS        R  + + + S     L   H   +A+  Y
Sbjct: 121 IKVQLITTLPGQVPEHNVDVFIS--------RELEQLNTFSYKATHLFEHHSSFFASKDY 172

Query: 174 LKNCREPLSIQELDKHNLITFGD 196
           L     P +I EL KHN++ +G+
Sbjct: 173 LDKYGTPTNINELKKHNMLIWGE 195


>gi|76812247|ref|YP_333069.1| gp58 [Burkholderia pseudomallei 1710b]
 gi|76581700|gb|ABA51175.1| gp58 [Burkholderia pseudomallei 1710b]
          Length = 384

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 129/288 (44%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L  F   AR G+FT AAE+L+++Q ++S+Q+  LET +G  LF R A+ L LT  G +  
Sbjct: 99  LVFFDAAARHGNFTRAAEELNVTQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 158

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV + +   +E T + ++E +      L IA         L   + EF   +P++ +++
Sbjct: 159 DRVHAILADCVEATALVMKEQTPH---SLTIACASGTATLFLADRIAEFSAEHPEVSVRI 215

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++     +++    D  +   + +    +    ++   +HAY AP +L   R P   Q+L
Sbjct: 216 LVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIIAEDVHAYCAPTFLAGRRVP--PQDL 273

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L+   +   + M   +W       IG      +  NSY  ++Q  + G G  L   
Sbjct: 274 MEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILGWK 333

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +++    ++  LV   +   +        +P   ++T  +  FR ++ 
Sbjct: 334 HMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLL 381


>gi|42781531|ref|NP_978778.1| LysR family transcriptional regulator [Bacillus cereus ATCC 10987]
 gi|42737454|gb|AAS41386.1| transcriptional regulator, LysR family [Bacillus cereus ATCC 10987]
          Length = 300

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 135/295 (45%), Gaps = 44/295 (14%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLLHSKNIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPTAILNFNNLYP 121

Query: 121 DIQIQLI----------LDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAY 168
           +I++ ++          L   ++DI + +     +  +  P+  S LI   LV    H  
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFLPVQDKEIISTPLYKSELI---LVVPTGHQL 178

Query: 169 AAPHYLKNCREPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISC 222
           A  +Y       +SI EL  +  I          LI    + FN+     RPI       
Sbjct: 179 AEHNY-------VSIAELQNYPFILLPKNFFLTKLITSHCQKFNF---KPRPI------- 221

Query: 223 LQVNSYLSIMQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           L++++  S++Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 222 LEISTMESLIQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|53725674|ref|YP_104010.1| DNA-binding transcriptional regulator CynR [Burkholderia mallei
           ATCC 23344]
 gi|67643550|ref|ZP_00442295.1| cyn operon transcriptional activator [Burkholderia mallei GB8 horse
           4]
 gi|121598916|ref|YP_991733.1| DNA-binding transcriptional regulator CynR [Burkholderia mallei
           SAVP1]
 gi|124386209|ref|YP_001027227.1| DNA-binding transcriptional regulator CynR [Burkholderia mallei
           NCTC 10229]
 gi|126449833|ref|YP_001082839.1| DNA-binding transcriptional regulator CynR [Burkholderia mallei
           NCTC 10247]
 gi|166998543|ref|ZP_02264401.1| cyn operon transcriptional activator [Burkholderia mallei PRL-20]
 gi|254178743|ref|ZP_04885397.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254202727|ref|ZP_04909090.1| cyn operon transcriptional activator [Burkholderia mallei FMH]
 gi|254208069|ref|ZP_04914419.1| cyn operon transcriptional activator [Burkholderia mallei JHU]
 gi|52429097|gb|AAU49690.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|121227726|gb|ABM50244.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124294229|gb|ABN03498.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|147746974|gb|EDK54051.1| cyn operon transcriptional activator [Burkholderia mallei FMH]
 gi|147751963|gb|EDK59030.1| cyn operon transcriptional activator [Burkholderia mallei JHU]
 gi|160694657|gb|EDP84665.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|238524917|gb|EEP88347.1| cyn operon transcriptional activator [Burkholderia mallei GB8 horse
           4]
 gi|243065227|gb|EES47413.1| cyn operon transcriptional activator [Burkholderia mallei PRL-20]
          Length = 311

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 135/306 (44%), Gaps = 41/306 (13%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  G+FT AAE LH+SQ ++S+QI  LE  +G++LF R AR + LTE G+   
Sbjct: 6   IRYFLAVAEQGNFTRAAESLHVSQPTLSQQIRQLEGVLGVQLFDRSARAVRLTEFGTAYA 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATT-----------IDLGQNLLQGNLKEFL 116
           R       +LE  +  + +     SG LR+A T           ID G N    NLK  +
Sbjct: 66  RHARAALQQLEAGRRAVHDVENLQSGSLRLAMTPTFSAYLIGWLID-GFNARYPNLKLTI 124

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTI----HMHAYAAP 171
              P  QI+ +L + ++D+ + +       + P I++  L    L  +    H HA    
Sbjct: 125 REMPQEQIEPLLADDELDVGIAFEAT----QSPEIETMPLWIETLALVVGRDHRHA---- 176

Query: 172 HYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNS 227
                 R+PLS  E     LI    L+ +    F     VD    R    PR++ ++VNS
Sbjct: 177 ----RRRKPLSPDEAAGEPLI----LLSRA---FATRGKVDQYFHRNGVTPRVA-IEVNS 224

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
             ++++    G    +LP  I +   +L  I  D   P  T      +    +  ++AF 
Sbjct: 225 ISAMLEMVRGGRIATVLPSAIAERRDDLCAIRLDPPLPQRTAALLMRKGGYRSAAMRAFV 284

Query: 288 NFIFLK 293
           + +  +
Sbjct: 285 DHMLAR 290


>gi|312797478|ref|YP_004030400.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312169253|emb|CBW76256.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 348

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 135/290 (46%), Gaps = 10/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SF  AAE++HLS +  S+ +  LE  +G +L  R  R ++LTE G   +
Sbjct: 11  MKVFRHVVEASSFAAAAERMHLSPAMASKHVMHLEAHLGARLLNRTTRRISLTEAGRDYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +LE  +  + E+SV P G LRI      G   L   + E+  L+P +Q+ + 
Sbjct: 71  ERCVQALTELEEAEQAVSEASVVPKGTLRINALSTFGNRYLMPAIAEYTRLHPGVQVNIT 130

Query: 128 LDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  + +D+  +  D AIR      +++SSLI R++   +    A+P YL+    P   ++
Sbjct: 131 MSERVVDLVEEGYDLAIRGSHSAKLRTSSLIARQIARAYFVICASPDYLRRHGVPQVPED 190

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN +    L         W L   +   G      +  N   ++    + G+GIA L
Sbjct: 191 LRAHNCLR---LAAHGAHTREWPLGNAENGGGVTTRGNIVANDIEALRAAAIAGAGIAYL 247

Query: 245 PDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
               V D   N  LV ++ + + P    ++  YP     + K+++F +FI
Sbjct: 248 GTDCVYDDLENGTLVPLLLEHVGPRELPIFAVYPSRRHLSAKVRSFVDFI 297


>gi|229167253|ref|ZP_04294994.1| Transcriptional regulator, LysR [Bacillus cereus AH621]
 gi|228616291|gb|EEK73375.1| Transcriptional regulator, LysR [Bacillus cereus AH621]
          Length = 305

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 139/293 (47%), Gaps = 40/293 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   ISIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   + +F   YP
Sbjct: 67  EAGRVLLSHSKTIFHEVEQARSAIQDLNGLHHGSLTIGSLLTVVNYLLPLAILDFNKQYP 126

Query: 121 DIQIQLI----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I++ ++          L   ++DI + +         P+Q   ++   L    +     
Sbjct: 127 NIELSVLGLRTGEIREKLLQNELDIGITFL--------PVQDKEIVSIPLYKSELTLVVP 178

Query: 171 PHYLKNCREPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQ 224
             +    R+ +SI+EL  + LI         +LI    ++FN+     +PI       L+
Sbjct: 179 TSHSLTERKYVSIEELQDYPLILLPKNFYLTELITSHCQNFNF---KPKPI-------LE 228

Query: 225 VNSYLSIMQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +++  S++Q    G GI +LP    D++  ++   ++I     TP+  +   Y
Sbjct: 229 ISTMESLIQMVAQGMGITVLPKPYIDFLQSEHIQAIKIENP--TPTIEIGLIY 279


>gi|196233604|ref|ZP_03132445.1| transcriptional regulator, LysR family [Chthoniobacter flavus
           Ellin428]
 gi|196222274|gb|EDY16803.1| transcriptional regulator, LysR family [Chthoniobacter flavus
           Ellin428]
          Length = 306

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 112/253 (44%), Gaps = 17/253 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  +   GS +  A +L +SQ ++SRQ+  LE   G  L  R    + LT  G  L 
Sbjct: 10  LRAFVCIVECGSISAGARRLKISQPTLSRQLRTLEDHCGAPLLQRDTHAMCLTPIGRSLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    E  +  L++  ++ SG LR+  TID GQ ++   L  FL L+P +  +L 
Sbjct: 70  ADARTMLAHAEEAEQRLRQDQMELSGHLRLFATIDWGQWVVTPMLSSFLQLHPRVTAELA 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ + +  +  D  I L   I   S++ R    I  H  AAP  +K  + P++ +  D
Sbjct: 130 LTNRPLHMLREGCDIGI-LPGKITDESVVARPAGMIGFHLVAAPSLIK--KHPVAKRPAD 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE--------PRISCLQVNSYLSIMQYCVLGS 239
             +           +  F + ++ +  +          P    L      S+ +    G 
Sbjct: 187 LKSWPWIS------ISGFQFWSSKEVTLAGRGGVEQTLPISPILISEGVTSLREAARTGL 240

Query: 240 GIALLPDYIVKDN 252
           G+AL+PD++++++
Sbjct: 241 GLALMPDWLIEED 253


>gi|264678674|ref|YP_003278581.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262209187|gb|ACY33285.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 147

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 80/140 (57%), Gaps = 2/140 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S++ + ++ LE  +G++LF+R  R +TLT +G      
Sbjct: 9   VFVQVAETRSFVAAGRLLGLSASAVGKSVARLEDRLGVRLFHRSTRSVTLTAEGMLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  ++EL ++S  P G+LR+  ++ L  +L+   L EF+  YP+I++ L   
Sbjct: 69  SRRILAEIEAAELELAQASNAPRGRLRV--SLPLVSSLVLPVLGEFMREYPEIELDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKP 149
           ++ +D+  D  D  +R  +P
Sbjct: 127 DQMVDVIEDGFDAVVRTGEP 146


>gi|251790814|ref|YP_003005535.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247539435|gb|ACT08056.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 311

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 128/286 (44%), Gaps = 10/286 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +A  GS T  A +  LS  ++S++++ LE  +G++L  R  R L LT +G  
Sbjct: 5   DDLLFFSRIAALGSLTAVARESGLSLPAVSKRLTQLEQRLGVQLIRRTTRRLDLTPEGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  + H++E  + +++ + +   G+L +  +   G+  +   +  F   + ++++Q
Sbjct: 65  YAEGALPILHEIEELESQVRRNQLTLRGRLSVNASFGFGRRHIVPLISAFARRHRELEVQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +++     D  IR   P   S L+  +L+       AAP YL  C  P ++ +
Sbjct: 125 LQLTSQPLNMLDAGVDIDIRFGAP-PDSRLVAYQLMKNPRVLCAAPAYLTRCGTPQTVAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L  HN +    ++ +   D+  W    D R         L  N    IM+Y + G GI L
Sbjct: 184 LAGHNCL----VLRQYESDYGLWRFYRDGREFTHRAFGNLSANDGEVIMRYALDGHGIIL 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              + V+    +  LV ++ D   P   +Y  Y +      ++ AF
Sbjct: 240 RSLWDVRPWLASGELVALLPDYTMPEADIYAVYQQRRHVPARISAF 285


>gi|254522745|ref|ZP_05134800.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219720336|gb|EED38861.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 288

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 2/141 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT AA +L +SQ+++S QI GLE  +GI+LF+R  RG+ LT++G+ 
Sbjct: 9   NALRAFEAAARHQNFTRAALELCVSQAALSHQIRGLEDRLGIRLFHRLPRGVALTDEGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+ V +E + ++  +         +    L +  T   G   L   L  F   +PDI+++
Sbjct: 69  LYPVLNESFERISASIARYTGGPAREVLTLGVVGTFATG--WLLPRLAAFESAHPDIELR 126

Query: 126 LILDNKDIDISMDYADCAIRL 146
           L   N  ID++ +  D AIR 
Sbjct: 127 LQTHNNRIDLAGEGLDLAIRF 147


>gi|172062993|ref|YP_001810644.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995510|gb|ACB66428.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 324

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 134/297 (45%), Gaps = 25/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF+  A+++H+S S+++R+I+ +E  +G+ L +R    +TLTE G    
Sbjct: 16  MRAFVRVVEMGSFSAVAKEMHVSTSTVARKITAIEEALGVALLHRSTHSVTLTEAGHIYL 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+ + 
Sbjct: 76  ERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQLDVR 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D  I   +    + ++ R L        A P YL  C  P +  +L 
Sbjct: 136 LTDNHNDLVAGGYDLDIHEGENYLDNLVVHR-LSRNDSILCATPGYLDRCGRPATPDDLL 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGSGIA 242
            HN + +  + P+   D  W    +   G+ R S L   + ++     +++    G G+A
Sbjct: 195 HHNCLRY--VHPEG--DPRW----ELVRGDARHSVLPAGNLVTDHSELLLEATCAGLGVA 246

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT---------VYFCYPEALKNTGKLKAFRNFI 290
               ++V+D     R+  + + P +          +Y  Y    +++ KL+  ++F+
Sbjct: 247 EFEIWLVRDLLASGRL--EAVLPRYRLHNKLTGEHIYIAYLANRRSSAKLRVLKDFL 301


>gi|186470502|ref|YP_001861820.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196811|gb|ACC74774.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 320

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 128/286 (44%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V  SGSF+  AE ++ S  S+SR +S LE ++  +L  R  R ++LTE G + +
Sbjct: 7   MRIFSRVVESGSFSAVAEHMNCSTGSVSRAVSSLEDQLQARLLQRTTRKISLTEPGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   LE  + E  ++     G LRI    DLG   L  ++ E+   +P + +QL 
Sbjct: 67  QKCKKILADLEDAEAEAGDAHTCARGTLRIHCVTDLGLAQLTHSIIEYRKRFPAVSVQLK 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +  ++  D  D +I     +  S  + + +        A+P +L+  R  ++  +LD
Sbjct: 127 FLPRMANLLEDEVDVSIVSAPTLPDSRNVCKLIGHCERVLVASPAFLQTHRIDMA-SDLD 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H L      +     D +   ++ +           VN   +     + G+G+A LP +
Sbjct: 186 EHALTPVSFRVEP--GDHHVRLSLVKSASREAAGQFAVNDTEATRIATLAGAGVAALPTH 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V D   +  LV++  +    +  V+  Y        K+K F +F+
Sbjct: 244 CVADDIRDGRLVQLFPESRLQNTGVFAVYSSRHHIDAKIKTFVDFL 289


>gi|229590881|ref|YP_002873000.1| putative positive regulator of gcv operon [Pseudomonas fluorescens
           SBW25]
 gi|229362747|emb|CAY49657.1| putative positive regulator of gcv operon [Pseudomonas fluorescens
           SBW25]
          Length = 313

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 11/236 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SF+ AA++LH++Q++ISRQI GLE  +G+KLF R  R + LT++G +L RV 
Sbjct: 17  FEAAARLESFSRAADELHITQAAISRQIRGLEDNLGVKLFSRRNRAVFLTQEGRELGRVV 76

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL--LQGNLKEFLLLYPDIQIQLIL 128
           S     +      L+ S  +     R+     L +    L   L  F   YP I+IQ++ 
Sbjct: 77  SLALQSISEGAASLRASHHRN----RVVLLCQLCEAFYWLMPRLSTFHQQYPHIEIQVVT 132

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
             + +       D A++       S  +     +  +    +P YL +  +PL I EL  
Sbjct: 133 STRPLTEFNGPFDVALQSTWRASGSHPLMFT-ASDEVFPVCSPAYL-SAEQPLPITELQS 190

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +  +      P  ME   WL    + + G  R +    +SY  ++Q  V G GIA+
Sbjct: 191 YTFLHHSADAPHLMEWDEWLRVFGQLMAGNARSASF--DSYPLMLQAAVEGHGIAM 244


>gi|218134864|ref|ZP_03463668.1| hypothetical protein BACPEC_02767 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990249|gb|EEC56260.1| hypothetical protein BACPEC_02767 [Bacteroides pectinophilus ATCC
           43243]
          Length = 298

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 96/176 (54%), Gaps = 12/176 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++D  R+FY VA+  SF+ AAE L  +Q +I+R ++ LE E+G KLF R  RG+TLT +G
Sbjct: 7   NYDYYRIFYYVAQYKSFSRAAEILENNQPNITRCMNNLENELGCKLFVRTNRGVTLTPEG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L+   +  + ++E  + E+   +   SG + I  +    + +L   L+EF   YP ++
Sbjct: 67  TRLYEHVAVAFEQIEVAEKEISMDNSLESGIVTIGASETALRLMLLNKLEEFHEKYPRVR 126

Query: 124 IQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA 169
           +++           L++  +D ++      I ++KP+Q +SL   + + I    Y+
Sbjct: 127 LRISNHSSPQAVKALEDGLVDFAV--VTTPITIKKPLQKTSLYSFREILIGGRKYS 180


>gi|225629364|ref|ZP_03787397.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|261217496|ref|ZP_05931777.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320371|ref|ZP_05959568.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261757099|ref|ZP_06000808.1| transcriptional regulator [Brucella sp. F5/99]
 gi|225615860|gb|EEH12909.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|260922585|gb|EEX89153.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293061|gb|EEX96557.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261737083|gb|EEY25079.1| transcriptional regulator [Brucella sp. F5/99]
          Length = 304

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 125/280 (44%), Gaps = 18/280 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 4   DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    +S + +    IAT    G   L   + +F+  +P I 
Sbjct: 64  RKFLPEVRRLLNQTEDTMLRAM-ASAQSTSSFSIATLPTFGTRWLMPRIPDFVEKHPGIA 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS----SSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           + +   +   D      D AI   +P+ +    + L    +V +     A+P  LK  R 
Sbjct: 123 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHDTCTFLCSEVIVPV-----ASPSLLKT-RR 176

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S +EL+   L+      PK    +     V+   G+      +   +  ++   + G 
Sbjct: 177 PASPEELENEPLLHLATR-PKMWAQWFESCGVE---GQSAYRGHRFEQFSMVIGAALAGL 232

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           G ALLP Y+++    +  LV + E  +      Y   PE 
Sbjct: 233 GFALLPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEG 272


>gi|207728305|ref|YP_002256699.1| hypothetical protein RSMK04635 [Ralstonia solanacearum MolK2]
 gi|206591551|emb|CAQ57163.1| hypothetical protein RSMK04635 [Ralstonia solanacearum MolK2]
          Length = 319

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 15/248 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LE ++G +L  R +  + +T  G 
Sbjct: 18  FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAELEAQLGTRLLQRASHRVCVTPVGE 77

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + L+ G L EF   +P ++I
Sbjct: 78  AVYRHAREMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLVSGWLAEFAQAHPKLRI 137

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L + N  +D+     D AIR    P+ S  ++ R L         +P  +    EP S 
Sbjct: 138 ELEVSNPYVDLIEQRIDVAIRAATGPLPSRDVVARHLGASPRVLVGSPALIARVGEPDSP 197

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYLSIMQYCVL 237
             LD    +  G L  +C    +W+    R      PI  PR   L  ++ +++ +  V 
Sbjct: 198 AGLDALPCLGQGTLA-RCR---DWVLLDARGHRHALPI-RPR---LATDNLIALREAAVA 249

Query: 238 GSGIALLP 245
           G G A+LP
Sbjct: 250 GLGFAVLP 257


>gi|126457796|ref|YP_001074277.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|126231564|gb|ABN94977.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
          Length = 448

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 144 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 203

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 204 NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 259

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 260 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAV 318

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L   + I  G L       ++      R +       L+V S L   Q  + G+
Sbjct: 319 PRHPDDLPGSHWIGHGGL---ANLSYSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGA 375

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 376 GISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 428


>gi|325168745|ref|YP_004280535.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064468|gb|ADY68157.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 309

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 135/294 (45%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F +VARS  F  AA +  +S S++S  +  LE ++G++LF R  R + LT+ G
Sbjct: 3   DLTDLNAFLLVARSKGFRQAARESGVSSSALSDAVKRLEEDLGVRLFNRTTRSVLLTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L   T   + ++ +   E++ S  + SG LR+   +   + +L   +  FL  YP+I+
Sbjct: 63  RLLLERTGPAFAEVASALDEVKSSRGRTSGDLRLNVPMSAARLVLPPIVPPFLKAYPEIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA-PHYLKNCREPLS 182
           ++++ D   +DI     D  IR  + ++   +          +A AA P YL    +P  
Sbjct: 123 LEIVTDENFVDIIKSGCDAGIRYDERLEQDMVALPIGPRQQRYALAASPGYLARRGKPQH 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSI-MQYCVLGSG 240
            Q+L  H+ I  G    + +  + +    +     P+ S  +Q      + +   + GSG
Sbjct: 183 PQDLLSHDCI-LGRFSGRALPSWEFERDGEEIAINPKGSLVVQFGGGTDLGIDAAIAGSG 241

Query: 241 IA-LLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALK-NTGKLKAFRNFI 290
           I  +  D++    D  +LV +ME+     F+  F Y    +     L+AF +F+
Sbjct: 242 IIYIFEDWLRPHFDRGDLVPVMEEWWL-RFSGPFLYYSGRRLVPAPLRAFIDFV 294


>gi|319781277|ref|YP_004140753.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167165|gb|ADV10703.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 300

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 29/305 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-- 63
           + + +F     +GS + A+ +  +  +++SR+IS LE  +  +L  R  R LT T+ G  
Sbjct: 5   EAMSLFVAAVEAGSLSAASRRFGIPLATVSRKISDLERHLNTRLLNRSTRRLTPTDAGQA 64

Query: 64  --SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             +   R+  +V    E  +    E SV P+G+L I   +  G+  +   +  FL  YPD
Sbjct: 65  YLAACRRILDDVG---EAERTAAGEYSV-PTGELAITAPVVFGRLHVLPVVTGFLAAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L ++   +  D+ D AIR+ + +  SSL+   +  I     A+P YL     P 
Sbjct: 121 VDIRLTLADRITQLVEDHFDLAIRIGR-LPDSSLVAIGVGAIRRVVCASPAYLAEHGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           + ++L+ H+ ITF  L       F      + P+   R+ S LQVN+  + +   + G G
Sbjct: 180 TPEDLETHDCITFEGLASAASWSF-IKGKAEIPV---RVRSRLQVNTAEAAIDAAIAGVG 235

Query: 241 IALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTG------KLKAFRNFIF- 291
           +  +  Y ++       +R++     P+      +P +L + G      KL+AF +F   
Sbjct: 236 LTRVLSYQIEAALRSGALRVLLQEFEPA-----PWPVSLVHAGHGLLPVKLRAFLDFAAP 290

Query: 292 -LKAR 295
            LKAR
Sbjct: 291 RLKAR 295


>gi|300724816|ref|YP_003714141.1| transcriptional regulator [Xenorhabdus nematophila ATCC 19061]
 gi|297631358|emb|CBJ92053.1| transcriptional regulator (postitive) of cleavage of glycine (LysR
           family) [Xenorhabdus nematophila ATCC 19061]
          Length = 308

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 133/296 (44%), Gaps = 18/296 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S Q+  LE  +G+KLF R  R L LTE G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQMKSLEDFLGLKLFRRRNRSLLLTEDGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S K  G L ++ +       L   L  F   +P I ++
Sbjct: 69  YYLDIKEIFTAINDATRKLQARSAK--GALTVSLSPSFAIQWLVPRLSGFNQSFPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-Q 184
           +   +++ D   D  D AI   +         R L   ++    +P  L   R PL +  
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRGSWPGMRTDR-LYPEYLLPVCSPSLLTGDR-PLKMPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLS-IMQYCVLGSGI 241
           +L +H L+             +W A V +   + +I+  Q  + S+ S ++Q  V G G+
Sbjct: 185 DLARHTLL-------HDSSRRDWQAYVRQLDMQQQINVHQGPIFSHSSMVIQAAVHGQGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   D   LV    DV+      Y    +     GK+ AFR +I  +A
Sbjct: 238 ALANNVMAQNEIDAGRLVCPFNDVLVSKNAFYLVCHDNQAELGKIAAFRKWILTQA 293


>gi|153008792|ref|YP_001370007.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560680|gb|ABS14178.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 310

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 125/280 (44%), Gaps = 18/280 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    +S + +    +AT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAM-ASAQSTSSFSVATLPTFGTRWLMPRISDFIEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE 179
           I +   +   D      D AI   +P+ + +    L    +V +     A+P  LK  R 
Sbjct: 129 INVASRSGVFDFEEQPFDLAIHYGQPVWAHATCTFLCSEVIVPV-----ASPALLK-ARH 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + +EL+   L+      PK    +     V+   G       + + +  ++   + G 
Sbjct: 183 PSAPEELENEPLLHLATR-PKMWAQWFESCGVE---GRSAYRGHRFDQFSMVIGAALAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           G ALLP Y+++    +  LV + E  +      Y   PE 
Sbjct: 239 GFALLPLYLIEQELLSGELVMLFEKPMRTENEYYLVVPEG 278


>gi|86361206|ref|YP_473093.1| transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|86285308|gb|ABC94366.1| probable transcriptional regulator protein [Rhizobium etli CFN 42]
          Length = 307

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 137/286 (47%), Gaps = 20/286 (6%)

Query: 19  SFTHAAEQ---------LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F HAAEQ           +S S+I + ++ LE  + ++LF R  R ++LTE+G+ L+  
Sbjct: 9   AFVHAAEQQSYVAAARIAGVSPSAIGKAVARLERRLRVRLFNRTTRSISLTEEGAVLYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   ++  +  + +S  +P G+LR++    +G +LL   L  F   +P+I++ +  +
Sbjct: 69  YKRIIDDMQDAEATVLQSRERPRGRLRVSVPHIVGHHLLMPMLPAFAERFPEIELDVDFE 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ ID+  +  D  +R  + +  + LI R L   H     +P Y +   +P +  +L +H
Sbjct: 129 DRVIDLVAEGLDVVVRSGE-LADARLIARHLGDQHFVVCGSPDYFERHGQPETPDDLSRH 187

Query: 190 NLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             I F    P       W   A  +R +  PR   L  N+  + ++    G G+A LP Y
Sbjct: 188 ACIRFK--YPSSGRVAPWALRAPYER-LLLPR--SLTFNNTDAGLRAAQGGLGLAHLPVY 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +       L+ ++   + P  ++   +P   + + K++AF +F+
Sbjct: 243 VAQPAMRAGTLIPVLTSFMVPFGSLSLVWPSNRQLSPKVRAFVDFV 288


>gi|120555797|ref|YP_960148.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8]
 gi|120325646|gb|ABM19961.1| transcriptional regulator, LysR family [Marinobacter aquaeolei VT8]
          Length = 299

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 133/290 (45%), Gaps = 10/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR    +A  G+   A E L + Q+++ R++  +E  +G++ F R+  GL LT  
Sbjct: 1   MDWDYLRYIRALAIGGTLAKAGEILGVHQTTVLRRLDQMEESLGVQFFERNQSGLQLTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +   +E  + +L      P GK+R+A    +   LL   L E +  YP+I
Sbjct: 61  GEMAFREAERLATDMENLERKLVGDDSAPVGKVRVAAEDVMMNELLSPILAEMVRTYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++++ DN   ++S   AD  +R     Q ++L   ++  I    Y A  Y   CR   +
Sbjct: 121 ELEVLTDNDVANLSHREADLTLRPENKPQ-ATLEGERIAAIESAVYGAAKY---CRRHRN 176

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +   ++    T+  ++P   E F+ LAT    R   +   S ++ NS  S+      G+G
Sbjct: 177 MDIENQPEGCTW--ILPD--ESFSHLATGRWYRKQLKNVTSVIRCNSLQSMHALARAGAG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP Y+      L R+ + +   S  ++    +  +   +++    F+
Sbjct: 233 LAVLPCYLGDATRELRRLSDPLEGESIDLWLHVNQDTQQMARVRMVMEFL 282


>gi|300717356|ref|YP_003742159.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299063192|emb|CAX60312.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 302

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 18/278 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F ++   GS + A  +L LS +S+S ++  LE+        R  R L+LT++G  
Sbjct: 3   ENLKLFLMILEKGSLSAAGRELGLSPASVSERLMMLESYYKATFLTRTTRSLSLTDEGRM 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  + +  +  ++  + K SG ++I   +DLGQ  +   L  FL+ +P + I 
Sbjct: 63  FAEGARRLLAEADELESRIRSGTQKISGPIKITAPVDLGQTRVVPILDRFLVQHPAVTID 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D++    D AIR  K   +S+L  R +         +P YL+    PL   +
Sbjct: 123 LNLTDSFVDLASQGIDFAIRYGK-FSNSTLKARAIGDNRRLVCGSPEYLQRRGTPLHPDD 181

Query: 186 LDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGS 239
           L++H+ I       + M+  +  W   VD   G P    +      N+   I Q+ + G 
Sbjct: 182 LNQHDCIMM-----RFMQGIDRVWSFQVD---GAPYAVSVNGQRTTNNGQLIKQWALQGQ 233

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           G+     + V+ +     LV ++ D   P   ++  YP
Sbjct: 234 GLCKKSIWDVEADLVAGRLVEVLADYALPPTALHIVYP 271


>gi|242238702|ref|YP_002986883.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242130759|gb|ACS85061.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 315

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 2/138 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            R F   A++GSF  AAEQLH++  ++SRQ+  LE  +G++LF R  R + L+  G  LH
Sbjct: 23  FRFFEAAAQTGSFVKAAEQLHVTHGAVSRQVRLLEAALGVELFERRNRAIFLSAAGRSLH 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ V+ +LE     LQ+S+ +    L    TI +    L   L  F    PDI + L+
Sbjct: 83  ATTTSVFEQLEGAVYRLQQSAREEVIVLSCEPTIAM--KWLIPRLPAFHRANPDINLHLV 140

Query: 128 LDNKDIDISMDYADCAIR 145
                ID +    D A+R
Sbjct: 141 AAGGPIDFARSGIDMALR 158


>gi|162455036|ref|YP_001617403.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161165618|emb|CAN96923.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 312

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 121/294 (41%), Gaps = 30/294 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +AR+GS   A   L +S S+++R++  LE  + +KLF RH  G  LT+ G+++ 
Sbjct: 1   MRHFLALARTGSVRAAGSMLGVSHSTVARRVEALEARLCVKLFDRHRDGYQLTDAGNEMV 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  ++   +  L     +  G +R+  T      +L   L      +P I+++L 
Sbjct: 61  SGAERVEREMAALERGLAGQDARLEGPVRVTCTDPFIAKILLRALAGLCEQHPGIELELD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            D K++D+S   AD A+R   P  S    LI R+L  I +  Y A  +           +
Sbjct: 121 ADAKNLDLSKREADVAVRALVPGASPPEHLIGRRLAPITLCNYVAAAH---------AAQ 171

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGE-------PRISCLQVNSYLSIMQYCV- 236
           LD            +      WL ++V R + E       P +        ++IM     
Sbjct: 172 LDPE----------RGARPARWLGSSVHRIVRELVASSSYPEVPIWGTFESMAIMMEAAH 221

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G  +LP Y     P L R+    +      +      L++  +L+A R  I
Sbjct: 222 AGLGFVMLPTYAGDPEPGLQRLARPDLRHVADFWLLSHRDLRDNARLRAAREAI 275


>gi|89069891|ref|ZP_01157225.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89044567|gb|EAR50686.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 305

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 7/247 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   G  + AA    +S +  S +IS LE  + ++LF R  R LT TE G  
Sbjct: 5   DNVRTFVRVFELGGMSAAARDQRVSPAVASARISQLEGHLRVRLFQRTTRSLTPTEHGHM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   ++  +  + E++  P G L +A  + LG+ L+  ++  F   YP I ++
Sbjct: 65  FYEGACRILASVDAAEAAVIEATENPRGTLYVAAPLGLGRRLIAPHIPAFAEKYPLITVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ID++ +  D A  L +P  S   I R +        AAP Y+     P   + 
Sbjct: 125 LRLSDRKIDLTAEGLDIAFFLGRPADSDMRI-RMIAECPRVLCAAPGYIAARGHPADGEA 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  + H+ +      P   E F W L T D P        L+ +    +  + + G G+ 
Sbjct: 184 LVAEGHDCLNL--RFPGAAE-FQWELVTPDGPRRFAVRGRLESDDGDVLTDWALAGQGVV 240

Query: 243 LLPDYIV 249
           + P + V
Sbjct: 241 MKPAFEV 247


>gi|285019200|ref|YP_003376911.1| transcriptional regulator, lysr family transcription regulator
           protein [Xanthomonas albilineans GPE PC73]
 gi|283474418|emb|CBA16919.1| putative transcriptional regulator, lysr family transcription
           regulator protein [Xanthomonas albilineans]
          Length = 292

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 2/141 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  + T AA +L ++Q+++S QI  LE  +G+ LF R  RG+ LTE+G +
Sbjct: 9   NALRAFEAAARHQNLTRAAAELCVTQAALSHQIKHLEARLGLVLFQRLPRGVALTEEGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           LH V +E + ++  T       S + +  LR+          L   L+ F   +PDI+++
Sbjct: 69  LHPVLTEAFDRIAVTLQRFAGGSYRET--LRVGVVGTFAAGWLLPRLEAFHTAHPDIELR 126

Query: 126 LILDNKDIDISMDYADCAIRL 146
           +   N  +D++ +  D AIR 
Sbjct: 127 VHTHNNRVDLACEGLDLAIRF 147


>gi|330943417|gb|EGH45770.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 275

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 119/262 (45%), Gaps = 11/262 (4%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           LS  +ISR+++ LE ++G++L +R  R ++LT +G         + H  ET +  L+  +
Sbjct: 2   LSPMAISRRLAALENDLGVRLVHRTTRSVSLTPEGEVFLPHAKTMLHASETARATLKADA 61

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
              SG LR+      GQ ++   L   +   P + I L L +  +DI+    D AIR+  
Sbjct: 62  GTASGVLRVTAPSVFGQTVIMPLLPALMQENPALSIDLTLSDSIVDIAGLGIDVAIRIAT 121

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            I+ S+L+ R L        A+P YL    +P  + EL +H  IT        M  + ++
Sbjct: 122 -IRDSALVARSLAPNPRVVCASPDYLARHGQPSILDELRQHPCITL-----HAMPYWPFI 175

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI-MEDVIT 264
                P+          NS  ++   C  G G+A+L  + V+      +L++I  EDVI 
Sbjct: 176 RE-GEPVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYWDVQQEIREGSLLQITFEDVIP 234

Query: 265 PSFTVYFCYPEALKNTGKLKAF 286
              +V    P   +   +++ F
Sbjct: 235 EQLSVTAVLPTRQRVPHRVRLF 256


>gi|254705630|ref|ZP_05167458.1| hypothetical protein BpinM_01101 [Brucella pinnipedialis
           M163/99/10]
 gi|254710859|ref|ZP_05172670.1| hypothetical protein BpinB_11471 [Brucella pinnipedialis B2/94]
 gi|254712668|ref|ZP_05174479.1| hypothetical protein BcetM6_04706 [Brucella ceti M644/93/1]
 gi|254715738|ref|ZP_05177549.1| hypothetical protein BcetM_04714 [Brucella ceti M13/05/1]
 gi|256029242|ref|ZP_05442856.1| hypothetical protein BpinM2_01030 [Brucella pinnipedialis
           M292/94/1]
 gi|256157437|ref|ZP_05455355.1| hypothetical protein BcetM4_01066 [Brucella ceti M490/95/1]
 gi|256253585|ref|ZP_05459121.1| hypothetical protein BcetB_04674 [Brucella ceti B1/94]
 gi|260167666|ref|ZP_05754477.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99]
 gi|261220721|ref|ZP_05935002.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261313040|ref|ZP_05952237.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261318433|ref|ZP_05957630.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|265986232|ref|ZP_06098789.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265995928|ref|ZP_06108485.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|260919305|gb|EEX85958.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261297656|gb|EEY01153.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261302066|gb|EEY05563.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|262550225|gb|EEZ06386.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|264658429|gb|EEZ28690.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
          Length = 310

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 125/280 (44%), Gaps = 18/280 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    +S + +    IAT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAM-ASAQSTSSFSIATLPTFGTRWLMPRIPDFVEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS----SSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           + +   +   D      D AI   +P+ +    + L    +V +     A+P  LK  R 
Sbjct: 129 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHDTCTFLCSEVIVPV-----ASPSLLKT-RR 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S +EL+   L+      PK    +     V+   G+      +   +  ++   + G 
Sbjct: 183 PASPEELENEPLLHLATR-PKMWAQWFESCGVE---GQSAYRGHRFEQFSMVIGAALAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           G ALLP Y+++    +  LV + E  +      Y   PE 
Sbjct: 239 GFALLPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEG 278


>gi|94500346|ref|ZP_01306879.1| probable transcription regulator protein [Oceanobacter sp. RED65]
 gi|94427645|gb|EAT12622.1| probable transcription regulator protein [Oceanobacter sp. RED65]
          Length = 326

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 90/173 (52%), Gaps = 1/173 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++ VF  V + GSFT AA QL + +S +SR I+ LE ++  +L  R  R +  T+ 
Sbjct: 2   LDLNQMSVFIAVVKEGSFTGAARQLGIPKSRVSRMITDLEDKLNARLLERTTREVRPTDI 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++    ++ ++      + + S KPSG LRI   +    + +   + EF   YP++
Sbjct: 62  GLEYYQEYKPLFEEISDIHSRISDRSQKPSGHLRICAPVSFAFSAMGRWMAEFKSHYPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           +++L+  + D+ +  D  D    + + ++ SSLI RK         A+P ++K
Sbjct: 122 EVELVFSDGDVHLVRDGFDIGFAIGE-LEDSSLIARKFDETSPVLCASPDFVK 173


>gi|242311607|ref|ZP_04810624.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|242134846|gb|EES21249.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 453

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 149 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 208

Query: 64  SKLHRVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +KL+  +    S +Y  + + +    ES    +G LR+A         L      F+  +
Sbjct: 209 NKLYCASQAFVSGLYDVIGSIRCLRHES----TGLLRVAAPSGFSTTHLSSIAATFIHQH 264

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++++ ++ +ID+  +  D A     P +      + L        A+P Y +    
Sbjct: 265 PQIELEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAV 323

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L   + I  G L       ++      R +       L+V S L   Q  + G+
Sbjct: 324 PRHPDDLPGSHWIGHGGL---ANLSYSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGA 380

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI+  PDY+V ++     L R++     P   +Y     A +   +  + R  +FL A
Sbjct: 381 GISAFPDYLVAEDLREGRLHRLLPTWTMPKGGIY-----AFRTAPRQASVRERLFLAA 433


>gi|194365488|ref|YP_002028098.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348292|gb|ACF51415.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 300

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 117/266 (43%), Gaps = 9/266 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ S+ S+ I+ LE  +G +L  R+ R ++LT +G +       +  ++   + EL ++ 
Sbjct: 28  ITPSAASKTIARLEERLGARLLNRNTRSVSLTAEGEQFLERCRRIMVEVAAAERELTDAH 87

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             PSG+L+   ++ L   L+   L  F   +P I++ L   ++ +D+  +  D  +R   
Sbjct: 88  AAPSGRLK--ASLPLVSGLMLPLLSAFAHRFPAIELDLHFSDRLVDVIEEGFDVVVRTGS 145

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P   S L  R L +  +    AP Y  N   P    EL  H  +      P       W 
Sbjct: 146 P-ADSRLHGRNLGSTRLLCVGAPAYFANRGTPRHPDELGGHACLLH--RFPGTGLIERWP 202

Query: 209 ATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVIT 264
              +    + R+   +  N   +I+   + G GIA LPD+  +D   N  LV I+++  T
Sbjct: 203 LQANAAGQDVRLMPAMTANHLETILHMAIDGHGIACLPDFATRDALGNGTLVSILDEWTT 262

Query: 265 PSFTVYFCYPEALKNTGKLKAFRNFI 290
              T +  +P       +++ F +F+
Sbjct: 263 EQSTFWALWPSHRHLQPRVRVFVDFM 288


>gi|15807995|ref|NP_285659.1| transcriptional regulator [Deinococcus radiodurans R1]
 gi|6460741|gb|AAF12446.1|AE001863_71 transcriptional regulator, HTH_1 family [Deinococcus radiodurans
           R1]
          Length = 316

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 117/262 (44%), Gaps = 18/262 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +   LR F  VA   + T AA +L + Q  +S+QI  LE E+G  LF+R  RG+ LT
Sbjct: 15  IPMELRHLRYFLAVADERNVTRAAARLGIQQPPLSQQIRELEREIGTPLFHRVPRGVELT 74

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLY 119
           E G    R+   +  ++E    E + +    +G+LR+  T     N  +QG L+ +  LY
Sbjct: 75  EAGHTFLRLVQSIPAQVEGATHEARRAGRGETGELRVGFTGAASINPQVQGLLRRYRDLY 134

Query: 120 PDIQIQLILDNKD--IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYLK 175
           PD+++ L   N    +D    +   A+  R   Q    +   LV         P  H   
Sbjct: 135 PDVRLTLTEKNTVTLLDELRSHQLDAVLARPLPQHLGDLTLTLVAREPMVAVVPRGHPAA 194

Query: 176 NCREPLSIQELDKHNLIT----FGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLS 230
             R PL ++ L     IT    FG LI     D  W A   R  G EPR+  L     LS
Sbjct: 195 QTR-PLPLERLRDETFITTPREFGPLI----YDTVWQAC--RAAGFEPRLGQL-APQMLS 246

Query: 231 IMQYCVLGSGIALLPDYIVKDN 252
           I+     G G++L+PD + + N
Sbjct: 247 IVSLVAAGLGVSLVPDAMRRLN 268


>gi|83749145|ref|ZP_00946149.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83724204|gb|EAP71378.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 305

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 15/248 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LE ++G +L  R +  +++T  G 
Sbjct: 4   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAELEAQLGTRLLQRSSHRVSVTPVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + L+ G L EF   +P ++I
Sbjct: 64  AVYRHAREMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLVSGWLAEFAQAHPKLRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L + N  +D+     D AIR    P+ S  ++ R L         +P  +    EP S 
Sbjct: 124 ELEVSNPYVDLIEQRIDVAIRAATGPLPSRDVVARHLGASPRVLVGSPALIARVGEPDSP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYLSIMQYCVL 237
             LD    +  G L  +C    +W+    R      PI  PR++    ++ +++ +  + 
Sbjct: 184 AGLDALPCLGQGTLA-RCR---DWVLLDARGHRHAMPI-RPRMA---TDNLIALREAAIA 235

Query: 238 GSGIALLP 245
           G G A+LP
Sbjct: 236 GLGFAVLP 243


>gi|239813854|ref|YP_002942764.1| MarR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800431|gb|ACS17498.1| transcriptional regulator, MarR family [Variovorax paradoxus S110]
          Length = 310

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 142/302 (47%), Gaps = 13/302 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  +G+ + AA +L +S++++S  ++ LE  VG +L  R  R    TE 
Sbjct: 1   MDLQSLTLLVEILDAGNLSAAARRLKMSRANVSYHLNQLERSVGAQLVRRTTRRAEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++    +  +L   +  +        G++R++     GQ ++ G L +F   YP I
Sbjct: 61  GLRLYQHGVAIQAELLAAKESVTTLGQGLQGRVRLSVPSGYGQLVMAGWLIDFKRQYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D AIR+  P    +L+ R++  +   A A+  Y +    P+ 
Sbjct: 121 VLDVVFENRIEDLLRDEVDIAIRV-IPEPPQNLVAREMGPVRYVACASSGYAQKHPLPVQ 179

Query: 183 IQELDKHNLIT---FGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLG 238
           + EL    ++T    G  +         L  V R  I EP    L   ++L + Q  + G
Sbjct: 180 LDELQGAPVVTAAVIGRQLRVSAYQGQNLGEVRREVILEP---TLISENFLFLRQAILAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI L+PDY+V+++    ++V  ++D     F   ++  Y    ++T  ++ F +FI  +
Sbjct: 237 LGIGLVPDYVVQEDVRKGDVVTTLDDWRLSIFGTQMFMLYMPNRQHTRAIRTFIDFILER 296

Query: 294 AR 295
            R
Sbjct: 297 VR 298


>gi|149907847|ref|ZP_01896515.1| transcriptional regulator, LysR family protein [Moritella sp. PE36]
 gi|149808853|gb|EDM68784.1| transcriptional regulator, LysR family protein [Moritella sp. PE36]
          Length = 311

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 9/285 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +A SGS T AAE L +S S +S+Q+  LE ++G++L  R  R  TLTE+G +    +
Sbjct: 15  FNALATSGSLTKAAEMLKVSVSHVSKQLHSLEEDLGVQLINRSTRTRTLTEEGKRYAEYS 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           +++   ++     + ++  + SG +R+A +       +   L +    YP + I + L +
Sbjct: 75  AQIVSLIQEADTLVTDTRDEISGHIRLALSRSFATLHIIPALDKLQKKYPQLTIDVSLFD 134

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             +D+  +  D  +   + I    + QR +        AAP YL+    P    EL ++N
Sbjct: 135 HKVDMLAEDIDLWVTTYEDISEGYVAQR-IADTRFLLLAAPEYLQAHGTPQHPDELTQYN 193

Query: 191 LITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            +T+      C    +W  A  D           +VN   ++    + G GI  L  Y++
Sbjct: 194 CVTYHSKSRSCN---HWSFARGDEEFSISVSGNYRVNLAEAVRDALIAGKGIGYLASYLL 250

Query: 250 KD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D      LV+++ D         Y  YP       +++   NF+
Sbjct: 251 TDELETGKLVQLLPDWRANQKMPAYAVYPRNKHLPARVRTTINFL 295


>gi|187478224|ref|YP_786248.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115422810|emb|CAJ49338.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 300

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 120/299 (40%), Gaps = 34/299 (11%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   AR  SFT AA +L+L+QS++SRQI  LE  +G  LF R  + +TLT  G      
Sbjct: 16  AFEAAARHLSFTAAAAELNLTQSAVSRQIRALEDMLGAPLFTRERQQVTLTAAGEAYALQ 75

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +   ++   Q  L   +    G L +A     G   L   L  FL  +P I I L   
Sbjct: 76  VRQALQQI--AQATLGFCANPAGGTLSLAILPTFGTRWLAPRLPGFLQSHPGITINLTTR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
               D   D  D AI   +P    + +++ +    + A         C + L  Q     
Sbjct: 134 LAPFDFQADTLDAAIHFGQPNWGGAELEQLMCETVVPA---------CSKALREQ----- 179

Query: 190 NLITFGDLIPKCMEDFNWLATVDRP-----------IGEPRISCLQVNSYLSIMQYCVLG 238
               +G  +P  + +   L  V RP               R   + V+ +    Q  + G
Sbjct: 180 ----YGFAVPADLLNAPLLLLVSRPDAWERWFQAHGFTRQRAGGMLVDQFAIAAQAAIAG 235

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTV---YFCYPEALKNTGKLKAFRNFIFLKA 294
            G+ALLP +++++      ++E V  P  +    Y  +P    N   L+AFR +I  +A
Sbjct: 236 LGVALLPRFLIEEELARGELVEAVDAPMESAERYYLAWPPGRSNHPPLQAFRQWIKTQA 294


>gi|114797657|ref|YP_760208.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114737831|gb|ABI75956.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 299

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 1/185 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +GS  +AA +L +++S +SR++S LE  +G +L  R  +G T T+ G + +   
Sbjct: 15  FVRVVETGSIANAAARLGIAKSIVSRRVSRLEAVLGAQLLTRTPKGTTPTDIGREYYARA 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +LE+ Q  + + + + SG LR+      G+ +    L EF  L+P +Q  +  ++
Sbjct: 75  EAGLMELESAQEVVSKLTGEVSGLLRVQVQTAFGEFVFAPLLAEFARLHPQVQFDIRFED 134

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + ++++ +  D AI    P     L+ RK+  I     A+P YL     P +  +L  H+
Sbjct: 135 RQVNMTDEAYDVAI-WPGPASDPMLVTRKIAGIRWAVVASPAYLDARGRPATPADLSAHD 193

Query: 191 LITFG 195
            +  G
Sbjct: 194 ALLHG 198


>gi|254249751|ref|ZP_04943071.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124876252|gb|EAY66242.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 313

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 138/279 (49%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDTGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +ET + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQNARAIIESVETAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R++    +   A+P Y++   +P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGNSRVRILASPDYIEAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
             +++LDKH L+ F    P+ +  +  L T       EP +     +S  ++ Q  + G+
Sbjct: 180 RKVEDLDKHTLLGFTQ--PESLNVWPILGTDGEAYRIEPDVYS---SSGETLRQLALEGT 234

Query: 240 GIALLPDYIV---KDNPNLVRIME----DVITPSFTVYF 271
           G+  L D++    +D   LV+++     DV  P   VY+
Sbjct: 235 GVVCLSDFVTAQDRDAGRLVQVLARHTLDVQQPIHAVYY 273


>gi|206563010|ref|YP_002233773.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039050|emb|CAR55013.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 297

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 1/178 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE +  ++L  R  R  T+TE G
Sbjct: 3   DLNDLYYFVKVVEHGGFTQAGRALDVPKSTLSRRIAALEAQYDVRLLQRTTRHFTVTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + +  +  ++    +P G +R++    L +  +   +  F+ ++P + 
Sbjct: 63  REFYERCLAVLVEADAAREVIERRHAEPRGIVRVSCPTALLEYRVSALVARFMAIHPQVH 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAPH+L     P
Sbjct: 123 VHLEATNRRVDLLSEGFDLALRVRFPPLEDSDLVMRVLADSPQRLVAAPHWLDGRAAP 180


>gi|126740706|ref|ZP_01756392.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126718221|gb|EBA14937.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 302

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 4/148 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +W  LRVF   AR+ SF  AA QL++S +++S+Q+  LET++G  LF RHA  +TLTE
Sbjct: 7   SLNW--LRVFEAAARTESFAKAAAQLNMSAAAVSQQVKALETQLGTPLFQRHAHAVTLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        +    LET    L   S +   +L + + +     +L   L EF  L+P 
Sbjct: 65  AGRAYLPSVQQSLLMLETATTGLFGESREQ--RLFVQSVLLFAHGVLAPGLAEFQALHPQ 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKP 149
           I + L   N   D +  +AD  I    P
Sbjct: 123 INLALSTGNMATDFANRFADLQIVFGNP 150


>gi|240142798|ref|YP_002967311.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
 gi|240012745|gb|ACS43970.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
          Length = 284

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 11/270 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W  LR+F  + R G+   AA  L  +Q ++ R++  LE  +G  LF R A GL LT++G
Sbjct: 3   EWSDLRIFLGITRYGTLGAAARALGSTQPTMGRRLRTLEGALGHTLFQRTADGLVLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +  +    +  L   S   +G LR+ ++   G+ +L   L  F   +P ++
Sbjct: 63  QVLREHAERMEEEALAIERRLAGRSGGLTGSLRLTSSDWFGRAMLAPALARFSRRHPGVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+ D +   +    AD A R+++      +I R+L+TI    Y           P+S 
Sbjct: 123 IELLTDARLYSLPRREADIAFRIKR-FDEPEVISRRLLTIDYALYGP----VGQDAPIS- 176

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +     L+T  D     M D  WL    R +   ++   + N+     + C  G+G A+
Sbjct: 177 GDGTGVRLVTM-DAAFSAMPDAIWL---RRMLPNAQV-AFRSNNREVQAELCRNGAGFAV 231

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           LP  +   +P L         PS   +  Y
Sbjct: 232 LPRPLGDTSPGLAAYDLGEPAPSRDTFVGY 261


>gi|254253795|ref|ZP_04947112.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124898440|gb|EAY70283.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 378

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 1/184 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE +  ++L  R  R  T+TE G
Sbjct: 84  DLNDLYYFVKVVEHGGFTQAGRVLGVPKSTLSRRIAALEAQYDVRLLQRTTRRFTVTETG 143

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E  +  ++    +P G +R++    L +  +   +  F+ L+P ++
Sbjct: 144 REFYERCVGVLVEAEAAREVIERRHAEPQGIVRVSCPTALLEYRVSELVARFMALHPKVR 203

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAPH L+    P +
Sbjct: 204 VHLEATNRRVDLVSEGIDLALRVRFPPLEDSDLVMRILGDSPQRLVAAPHLLEGRSPPTA 263

Query: 183 IQEL 186
              L
Sbjct: 264 PAAL 267


>gi|218663257|ref|ZP_03519187.1| LysR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 334

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 1/191 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA   + +  A +L + QS+++R ++ LE  VG+ L  R  R +TLTE+GS+ 
Sbjct: 3   EMRTFVRVAERANLSVVARELGVGQSTVTRHLNELEEAVGVALLSRTTRRVTLTEEGSRY 62

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   +E    E +++   P+G +R++ T  LG   +   +  F   +PDI+I L
Sbjct: 63  YTNCLQILRLVEQAAEEARDARQAPAGAVRLSCTAALGVMHVTRMIFAFQDRHPDIRIDL 122

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ID+  +  D A+RL  P+  SS+    +         AP YL     P    +L
Sbjct: 123 NLTDERIDLVREGVDVALRL-GPLADSSMKLHAVGESQRLLVGAPAYLSARGRPERPADL 181

Query: 187 DKHNLITFGDL 197
            ++  +   ++
Sbjct: 182 SRYETVVMSNV 192


>gi|90425221|ref|YP_533591.1| DNA-binding transcriptional activator GcvA [Rhodopseudomonas
           palustris BisB18]
 gi|90107235|gb|ABD89272.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 314

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 120/290 (41%), Gaps = 10/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L+++Q++IS QI  LE E+GI+LF R  R L LT Q   
Sbjct: 9   NGLRAFEAAARHLSFTSAAAELNVTQTAISHQIRRLEEELGIQLFVRQNRTLALTPQARD 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   ++ L      L       +  L I+T   L    L   L  F   +P I ++
Sbjct: 69  YLPGVRAAFNDLRLATDRLLRKDA--ACVLTISTLASLAAKWLLPRLSAFQEAHPAIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +      +D      D AIR  +  Q   L    L+   +    +P  L+  +   S Q+
Sbjct: 127 ITTSTALVDFRKGDVDAAIRYGRG-QWPGLRADWLMADQLFPVCSPALLQGKKPLRSPQD 185

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243
           L +H+L+          +D+  WL     P    +   L  +     +Q  + G G+A+ 
Sbjct: 186 LAEHSLLYSSG---GYDDDWRLWLTAAGLPADISKQPGLSFDLIFMTVQAAIDGLGVAIG 242

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              Y+  D     LV   +  +   +  Y   PEA   T KL AFR ++ 
Sbjct: 243 RTSYVEADIAKGRLVVPFQIKLPDEWGFYLVSPEARAETPKLSAFRQWLL 292


>gi|104781500|ref|YP_607998.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110487|emb|CAK15195.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 310

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 130/286 (45%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++E G +  
Sbjct: 7   MRTFARVVECGSFAAAANALDISSAQVSRIVAELENQLQTRLLHRTTRRLRMSEAGERFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++    E    E + + + P G LR   T  LG  L+   +  +    P++ ++L 
Sbjct: 67  ERSRQIMLLTEEAMDEARGAHLTPRGHLRFHCTHGLGL-LMMPLVARYNAANPEVVMELT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D   +  D  I + + +  S LI   L +IH    A+P YL     P   ++L 
Sbjct: 126 LSQRNPDPLAEGHDVVITIGQGLPDSQLIAIPLGSIHSILCASPDYLARHGVPKRPEDLH 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +   D  P   ED+++    ++ +  P+ + L  N   ++++   LG G+ LLP Y
Sbjct: 186 EHVCLRTVD--PLFEEDWSFEQASEKCVIVPQDTFL-TNVADAMLKATELGMGVGLLPYY 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +   L R++         +Y  YP       K++ + +F+
Sbjct: 243 SASQAMEEGRLCRLLAPHRLRQREIYAIYPSRHYLDAKVRTWLDFL 288


>gi|307319975|ref|ZP_07599397.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306894352|gb|EFN25116.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 296

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 6/195 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +L     VAR G F  AA QL +S S++S  I  LE  + ++LF R  R + L+
Sbjct: 1   MRASLSELEAVAAVARHGGFRAAARQLGMSSSALSHAIVALEERLAVRLFNRTTRSVVLS 60

Query: 61  EQGSKLHRVTSEVYHKLET--TQIE-LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             G +     SE+   L+T    IE + E S +PSG+LR+       + LL+  L E+  
Sbjct: 61  AAGEQF---LSEIAPALQTIDNAIEHIGEHSSRPSGRLRLNMAPGAARMLLEPLLLEYGR 117

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP+++++++ +N  +D+     D  +RL + I    +      T+      +P Y K  
Sbjct: 118 RYPEVELEVVTENALVDVIGKGFDAGVRLAEMISPDMVAIPITPTLRSLVVGSPEYFKAR 177

Query: 178 REPLSIQELDKHNLI 192
            +P+   +L +H  I
Sbjct: 178 SKPIVPLDLVQHRCI 192


>gi|302186987|ref|ZP_07263660.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 307

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 4/197 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + +S +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDMSAAVASAALKRIEGQLGTRLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  L  S  +  G L+++   DLG+N+L   L EF   +P + +
Sbjct: 64  GFLEYARAALGSLEEGRRLLASSQDRCEGVLQLSAPSDLGRNVLLPWLDEFQQQHPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSL+   ++  +     AAP YL+   EP  +
Sbjct: 124 RLLLGDRIADLFRQPVDVALRYGEP-EDSSLVALPVLPDNRRVLCAAPSYLQRHGEPHQV 182

Query: 184 QELDKHNLITF--GDLI 198
           ++L +HN + F  GD +
Sbjct: 183 EQLAQHNCLLFMLGDRV 199


>gi|209518562|ref|ZP_03267382.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501012|gb|EEA01048.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 310

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 13/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF  VA   SF  AA QL ++ S++S+ +  LE  +G  LF R  R + LTE G +
Sbjct: 13  DGVEVFLSVAEHRSFRGAAAQLGVTPSAVSQAVRVLEARIGATLFIRTTRSVGLTEAGER 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + +L       +    +PSG LR++    +   LL+  +  F    P+++++
Sbjct: 73  FLARAKPAFEELVAASEVARGLGERPSGLLRLSVPRAVVPILLEPLIASFCKANPEVEVE 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   + ID++ +  D  IRL + + +  +              +P Y      P  + +
Sbjct: 133 IVASKELIDLATEGFDAGIRLGQFVAADMIAVPLSPPFRFVVVGSPGYFAARGRPECMDD 192

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L +H  I +    G L      D      ++  +  P I+    + +L I+   + G G+
Sbjct: 193 LREHACIRWRRSSGALALWSFNDHGQ--PIEIAVSGPFIA----SDFLGILGAAIEGIGL 246

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A LP+ +  +      LV ++++       V+  YP   +   KL+AF
Sbjct: 247 AQLPEPMAAEGLKTGKLVHVLDEYAPMVPGVFLYYPSRRQIMPKLRAF 294


>gi|126641849|ref|YP_001084833.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 274

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 13/223 (5%)

Query: 34  ISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSG 93
           ISR I  LE  +G +LFYR+ R +T TE G         +  + +  Q  LQ+ +++PSG
Sbjct: 2   ISRTIQQLEDALGQQLFYRNTRAITPTESGKLFFEYAKRITEQFDEAQKALQDKTIEPSG 61

Query: 94  KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSS 153
            +RI   +  GQ  +   L      YP + I+LI  ++ ID   +  D   R+   +  S
Sbjct: 62  LVRINAPVFFGQRHIAPWLAGLSERYPRLLIELIQTDEFIDPLRESTDLIFRIGA-LTDS 120

Query: 154 SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN-WLATVD 212
           S   R   T   H  A+P Y+          EL++H  + +     K  E  N WL  V 
Sbjct: 121 SFHARIFGTQKYHLAASPQYVAKYGTLDHPTELNQHKCLVY-----KGFEGPNRWL--VR 173

Query: 213 RPIGE----PRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
           +P  E    P    L  N+  S+M   +   GI L PD+++ +
Sbjct: 174 KPNEEWVHYPITPLLSSNNAESLMTAALHSMGIVLFPDWLIGE 216


>gi|290510312|ref|ZP_06549682.1| LysR family transcriptional regulator, glycine cleavage system
           transcriptional activator [Klebsiella sp. 1_1_55]
 gi|289777028|gb|EFD85026.1| LysR family transcriptional regulator, glycine cleavage system
           transcriptional activator [Klebsiella sp. 1_1_55]
          Length = 297

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 122/243 (50%), Gaps = 23/243 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VAR GS T AA +L ++ S++S+ I  LE  VG+ LF RH RG+ +TE+G +L
Sbjct: 9   SLRSFEAVARLGSVTQAAHELSVTHSAVSQHIKQLEALVGVTLFIRHGRGVRITEEG-RL 67

Query: 67  H--RVTSEVYHKLETTQIELQESSVKPSG-KLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++   + H  + T++      +KP   ++ +AT    G + L   L  F   +P I 
Sbjct: 68  YALQIREALQHIADATRM----VQIKPRTLEVTLATLPSFGCHWLLPRLARFQARHPQIA 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+     +++  +  D AIR+ +      +  R L        AAPHY ++   P + 
Sbjct: 124 VRLLTSLAVVNLQQEGIDLAIRMGQG-DWEGMESRHLFADEQLVVAAPHY-RSGDLPTTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFN-WL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           Q +   ++I         ME +N W   A +++PI     + L++N    +++   LG+G
Sbjct: 182 QAIAASDIIF-------SMESWNAWCSQAGLEKPIVP---AGLRLNDSNLVLEAVRLGAG 231

Query: 241 IAL 243
           +AL
Sbjct: 232 VAL 234


>gi|258543127|ref|YP_003188560.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634205|dbj|BAI00181.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637265|dbj|BAI03234.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640317|dbj|BAI06279.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643374|dbj|BAI09329.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646429|dbj|BAI12377.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649482|dbj|BAI15423.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652468|dbj|BAI18402.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655526|dbj|BAI21453.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 315

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 134/300 (44%), Gaps = 16/300 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V + G F+ AA    L +S +SR+I  LE  +  +L  R +R  ++TE G
Sbjct: 10  DLNDFGYFVQVVKYGGFSAAARATGLQKSLLSRRIRLLEERLHARLIQRSSRHFSVTETG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +  + +T +  + +   +P G +R++  + L        L  F++LYP + 
Sbjct: 70  HRFYEHCIAMLEEADTAERSVAQLQTEPCGLVRLSCPVALLNFQFGALLARFIMLYPAVT 129

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAA----PHYLKNCR 178
           +QL   N+ +D+  +  D AIR+R  PI +S L+ R L T      AA    PH L +  
Sbjct: 130 LQLESTNRRVDVLKEGMDLAIRVRFPPIAASDLVMRTLDTSTQCLIAAPTLVPHPLASPA 189

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +  +   LD H        + +  E     AT+     EPR   L  +    + +  ++G
Sbjct: 190 DLNAFPSLDFHTTPGSHSWLLENQE--GQTATI---FHEPR---LATDDMAVLREAALVG 241

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +GI  +P  +V  +     LVRI+      +  ++  +P        ++A  +F+  + R
Sbjct: 242 AGIVQMPTMMVWQDIEAGRLVRILPGWHPQAGIIHAVFPSRRGLVPAVRALLDFLAQECR 301


>gi|115375934|ref|ZP_01463182.1| transcriptional Regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820710|ref|YP_003953068.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367017|gb|EAU66004.1| transcriptional Regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393782|gb|ADO71241.1| Transcriptional Regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 339

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L+VF   A +GSF+ A+  L+++ +  S  +  LE  + ++LF R  R L LT++G 
Sbjct: 30  FEDLQVFVAAADAGSFSAASRVLNVTPAVASTAMKRLEQALEVRLFIRSTRSLRLTDEGE 89

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           LE  ++ +       +G L+++   D G+N+L   L EF   +P + +
Sbjct: 90  RYLVHARLALRALEDGRMTVARRKGDLTGTLKLSVPSDFGRNVLLPWLDEFQSTFPKLTV 149

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           QL + ++  D+     D AIR    ++ S+L+ + L   +     AAP YL     P ++
Sbjct: 150 QLRVSDRVADLYRQPVDVAIRY-GTLEDSALVSQPLAPTNRRVLCAAPAYLARHGAPETL 208

Query: 184 QELDKHNLITF 194
           + L +HN + F
Sbjct: 209 EGLRRHNCLRF 219


>gi|260752262|ref|YP_003225155.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551625|gb|ACV74571.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 303

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 1/191 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA  GSF  AAE + LS+ ++S+ +S LE  +G  LF R++R ++LT+ G
Sbjct: 5   DFEAWAIFAKVAELGSFARAAEAIQLSKPTVSKAVSRLEQSLGSALFNRNSRHISLTDLG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +++  + E  + E +    +PSG ++IA     G   L   L +FL  YP+I 
Sbjct: 65  RSLLGHANKIIAEAEMAETEARGGIQRPSGLIKIAAPTTFGLWHLSPVLPDFLAQYPEID 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +   +  +D+  +  D A+R+   +  S+L  R+L  + +   A   YL     P   
Sbjct: 125 ISIDFSDALVDLVGEGYDIALRIAS-LADSALRARRLCPVRLLLVATSDYLDRIGRPQHP 183

Query: 184 QELDKHNLITF 194
           + L+K     +
Sbjct: 184 KALEKQKSFVY 194


>gi|46205932|ref|ZP_00047901.2| COG0583: Transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 244

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 3/187 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ-GSKL 66
           + +F  VAR  SF+ AA  L +  SS+SR+I+  E  VG++L  R  R L LT   G   
Sbjct: 1   MALFVEVARRKSFSQAAAALGMPISSLSRRITMFEASVGLRLLDRTTRKLALTSSYGEAY 60

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGNLKEFLLLYPDIQIQ 125
               S +  + + T  ++   +  PSG L+IA   D      L G + EF  L+  I + 
Sbjct: 61  LAQVSRLVDEAQRTFDDMMAVAKGPSGFLKIAAPPDFWVLRHLSGVITEFSALHEHIHVH 120

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L    +D+  D  D A+ + +P + +SLI RK+  +    + AP YL     P++  +
Sbjct: 121 VDLKPAPVDLVGDNYDLAVAIEEP-RETSLIVRKVAEVENGIFGAPSYLAERGAPMTPLD 179

Query: 186 LDKHNLI 192
           L++H +I
Sbjct: 180 LERHQVI 186


>gi|326554347|gb|ADZ88986.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 304

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 23/288 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 4   DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    +S + +    IAT    G   L   + +F+  +P I 
Sbjct: 64  RKFLPEVRRLLNQTEDTMLRAM-ASAQSTSSFSIATLPTFGTRWLMPRILDFVEKHPGIA 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE 179
           + +   +   D      D AI   +P+ + +    L    +V +     A+P  LK  R 
Sbjct: 123 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHATCTFLCSEVIVPV-----ASPSLLKT-RR 176

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S +EL+   L+      PK    +     V+   G+      +   +  ++   + G 
Sbjct: 177 PASPEELENEPLLHLATR-PKMWAQWFESCGVE---GQSAYRGHRFEQFSMVIGAALAGL 232

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G ALLP Y+++    +  LV + E  +      Y   PE     GKL+
Sbjct: 233 GFALLPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPE-----GKLE 275


>gi|225686666|ref|YP_002734638.1| hypothetical protein BMEA_B0887 [Brucella melitensis ATCC 23457]
 gi|256111182|ref|ZP_05452218.1| hypothetical protein Bmelb3E_01091 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256262201|ref|ZP_05464733.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
 gi|265992694|ref|ZP_06105251.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|225642771|gb|ACO02684.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|262763564|gb|EEZ09596.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|263091897|gb|EEZ16219.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
 gi|326411055|gb|ADZ68119.1| conserved hypothetical protein [Brucella melitensis M28]
          Length = 310

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 125/280 (44%), Gaps = 18/280 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    +S + +    IAT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAM-ASAQSTSSFSIATLPTFGTRWLMPRILDFVEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE 179
           + +   +   D      D AI   +P+ + +    L    +V +     A+P  LK  R 
Sbjct: 129 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHATCTFLCSEVIVPV-----ASPSLLKT-RR 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S +EL+   L+      PK    +     V+   G+      +   +  ++   + G 
Sbjct: 183 PASPEELENEPLLHLATR-PKMWAQWFESCGVE---GQSAYRGHRFEQFSMVIGAALAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           G ALLP Y+++    +  LV + E  +      Y   PE 
Sbjct: 239 GFALLPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEG 278


>gi|163749428|ref|ZP_02156676.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161330837|gb|EDQ01764.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 313

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    E     +   +    G L++  +   G   +   L EF+  +P++++Q
Sbjct: 66  LYAQGEELLRGAEQAIASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMNTHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y++   +    ++
Sbjct: 126 ISLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLAASPSYIEKNGQLDRPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    V G GI  L
Sbjct: 185 LVDHNCLVYHG---EWHEHSVWQFKQGEDYCEIGVSGNFRVDNAPALKSAAVSGLGIVYL 241

Query: 245 PDYIVK---DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++   +   LV +++D  +T    +   YP       K+ AF +F+
Sbjct: 242 ASYLLEGEVEKGTLVPLLQDWQLTHYLPLQAVYPRRKHLAPKVSAFIDFL 291


>gi|190889933|ref|YP_001976475.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695212|gb|ACE89297.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 302

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 130/311 (41%), Gaps = 41/311 (13%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   V+   SF  AA +L ++ S+IS  IS LE  +G++L  R  R +  TE+G  L
Sbjct: 8   QLAVLAAVSEHRSFRAAARELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGRLL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    +++     ++++  KP+G LRI         LL   L +FL LYPDI +++
Sbjct: 68  LERLRPALEEIDIALEAVRDTRAKPAGNLRITAPRFASDILLAPRLGDFLNLYPDITLEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++   DI  +  D  +RL + +++  +  R    +     A+P Y +   +P   ++L
Sbjct: 128 ANEDGFTDIVKEGFDAGLRLEESLEADMIAVRFSPNLTTVIAASPDYFERHPKPEHPRDL 187

Query: 187 DKHNLI----TFGDLIPKCMEDFNW---------LATVDRP--IGEPR-----ISCLQVN 226
             H  I    T G +       + W         +  VD P  + E R            
Sbjct: 188 VHHRCIKRRFTNGSI-------YRWEFEKDGQELVVAVDGPLIVSEDRLALLAALNGAGL 240

Query: 227 SYL-SIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +YL  I  +  L +G              LVR++ED   P    +  YP   +    L+A
Sbjct: 241 AYLFDIRVHAELAAG-------------KLVRVLEDWCAPYPGPFLYYPTRRQMRPALRA 287

Query: 286 FRNFIFLKARD 296
           F +F     RD
Sbjct: 288 FIDFFRYVERD 298


>gi|170737161|ref|YP_001778421.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819349|gb|ACA93931.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 311

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 1/179 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT 
Sbjct: 5   GYRFELMETFVRIVEAGSLSAAAVQLHTTQPTISRRLQALENSLGMRLLQRTTHTMRLTV 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   E+       + +L+ +  +P G LR+A     GQ      L +FL  YP 
Sbjct: 65  DGERCFKQAKELLASWAAFEADLRGAQEEPDGLLRVAVPHAFGQQRFVAPLAQFLRDYPR 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++ +L ++  D      DCAI++ +P     ++  ++  +     AAP  L     P
Sbjct: 125 VSVEWLLQDEVRDFVGSGIDCAIQVGEPT-DPGVVAIRIAKVPRFVVAAPSVLNGADVP 182


>gi|241207220|ref|YP_002978316.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861110|gb|ACS58777.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 302

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 133/311 (42%), Gaps = 41/311 (13%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   V+   SF  AA++L ++ S+IS  IS LE  +G++L  R  R +  TE+G  L
Sbjct: 8   QLAVLAAVSEHRSFRAAAKELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGRLL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    +++     ++++  KP+G LRI         LL   L +FL LYPDI +++
Sbjct: 68  LERLRPALEEIDIALEAVRDTRAKPAGNLRITAPRFASDLLLAPRLGDFLNLYPDITLEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++   DI  +  D  IRL + +++  +  R    +     A+  Y ++  +P   ++L
Sbjct: 128 ANEDGFTDIVKEGFDAGIRLEESLEADMIAVRISPNLTTVIAASSEYFEHHPKPEHPRDL 187

Query: 187 DKHNLI----TFGDLIPKCMEDFNW---------LATVDRP--IGEPR-----ISCLQVN 226
             H  I    T G +       + W         + +VD P  + E R            
Sbjct: 188 VHHRCIKRRFTNGSI-------YRWEFEKDGQELVVSVDGPLIVSEDRLALLAALNGAGL 240

Query: 227 SYLSIMQ-YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +YL  M+ Y  L SG              LVR++ED   P    +  YP   +    L+A
Sbjct: 241 AYLFDMRVYDELASG-------------KLVRVLEDWCAPYAGPFLYYPTRRQMRPALRA 287

Query: 286 FRNFIFLKARD 296
           F +F     +D
Sbjct: 288 FIDFFRYSEQD 298


>gi|91778353|ref|YP_553561.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|296159932|ref|ZP_06842753.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|91691013|gb|ABE34211.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
 gi|295889915|gb|EFG69712.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 318

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 100/199 (50%), Gaps = 8/199 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +  + SFT AAE L++ +++ +  +  LE  +G  L  R  R L++T +G+  +
Sbjct: 8   MRTFIRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTALLARTTRRLSVTPEGAAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++   ++  +  ++ ++   +G+LRI     +   ++   L +F   YP++ + + 
Sbjct: 68  ERCAQILADIDEMEASIRHATDNLTGRLRIEMPGAVASTIVLPALDDFHTRYPNLDLAIG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+ +D+  +  DC+I+L + +  S+L+ R+L T+     A+P YL     P  + +L 
Sbjct: 128 ISNRTVDLISEAIDCSIQLGE-LPDSNLVARQLGTLEHVTCASPAYLARYGTPTDLDDLR 186

Query: 188 KHNLITFGDLIPKCMEDFN 206
            H  +        CM   N
Sbjct: 187 GHVAV-------NCMSPHN 198


>gi|296132342|ref|YP_003639589.1| transcriptional regulator, LysR family [Thermincola sp. JR]
 gi|296030920|gb|ADG81688.1| transcriptional regulator, LysR family [Thermincola potens JR]
          Length = 293

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 138/262 (52%), Gaps = 22/262 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +++  +VFY VA++ SF+ A+++LH+SQS++S+ +  LE ++  +LF R+ + + LT
Sbjct: 1   MDINFELYKVFYYVAKNLSFSEASQELHISQSAVSQSVKLLEEKMNCRLFIRNTKQVKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L +     Y+ +   +  ++E      G++RI  +  + +  L   LK+F  LYP
Sbjct: 61  QEGETLFKHIEPAYNLIRAGERSIEEIHSLQQGEVRIGASDTICKYYLLPYLKKFNRLYP 120

Query: 121 DIQIQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I+I++          +L    +D+++      + +   ++ +  +  K+ TIH    A 
Sbjct: 121 NIRIKVTNRTSPRCIELLKKGSVDVAV------VNMPGTVEKTMRVD-KVKTIHDVFIAG 173

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
            ++    R+ +S+QEL ++ ++    ++ K     N++ T     G   I  +++ S   
Sbjct: 174 QNFAHLQRKKISLQELAQYPVL----MLEKNTTTRNFIDTFLESKGVKLIPEVELGSVDL 229

Query: 231 IMQYCVLGSGIAL-LPDYIVKD 251
           +++   +G GI+L + +YI K+
Sbjct: 230 LVEMAKIGLGISLVVKEYIEKE 251


>gi|299138739|ref|ZP_07031917.1| transcriptional regulator, LysR family [Acidobacterium sp.
           MP5ACTX8]
 gi|298599375|gb|EFI55535.1| transcriptional regulator, LysR family [Acidobacterium sp.
           MP5ACTX8]
          Length = 297

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 70/127 (55%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +LR F  V ++GSFT AAE+  ++Q S+S+QI  LE  VG +LF R  R + LT+ 
Sbjct: 1   MELHQLRYFCSVVKNGSFTKAAEEEGIAQPSLSQQIRRLENSVGAELFERLGRSVRLTQA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  H     + H+ +    ++++   +P G LRI     +   L+   L+EF   YPDI
Sbjct: 61  GSVFHPYAENILHQSKLATAQVRQLETEPRGSLRIGVIPTVLPYLVAPRLQEFTRSYPDI 120

Query: 123 QIQLILD 129
           +I L  D
Sbjct: 121 EITLEED 127


>gi|293608315|ref|ZP_06690618.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828888|gb|EFF87250.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 283

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 135/291 (46%), Gaps = 21/291 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ L  F V     S + AA +L +  +++SR+I+ LE  + +KL  R  R   LT  G
Sbjct: 3   DWENLHYFSVFTEEKSLSAAARKLGVDHATVSRRIAQLEQNLKLKLVDRRPRTYILTPDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +V + +  +  + +   Q    +  G + I+       +L+  +L +F   YP ++
Sbjct: 63  ERLAQVVARMMEETFSIERLTQAGQQEVMGSVSISMPPLTAAHLIMPHLGKFYRHYPQLK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ D   + +    AD A+R  +P +  +L+ RK+  I    YA  +YL +  +P + 
Sbjct: 123 LRVLGDVHYVSLQHSEADIAVRFGRP-KDENLVARKVGEIPFGIYAGSNYLAST-DPENY 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + +        G    K  E  N    +   + P  + R +C ++              G
Sbjct: 181 EWISVEVGGVHGQKQQKLKERLNHKEPIMVTNNPELQWRAACGEI--------------G 226

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +A+LPD++   + NLVR+ +D    S  ++    E L+++  ++A  +F+ 
Sbjct: 227 LAVLPDFLGAIS-NLVRLQDDYPM-SAEIWLVTHEDLRHSPAIRAVMDFLM 275


>gi|240949153|ref|ZP_04753500.1| putative transcriptional regulator [Actinobacillus minor NM305]
 gi|240296456|gb|EER47092.1| putative transcriptional regulator [Actinobacillus minor NM305]
          Length = 296

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 14/201 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +D+  + +F  V   GS   AAE+L ++ S++++ I  LE  + IKL  R  R L+LTE 
Sbjct: 2   YDYKAMSIFATVIEQGSMQAAAEKLFMTPSAVTQAIQKLEAHLKIKLLNRTTRKLSLTEA 61

Query: 63  G-------SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
           G       SK+ +  SE    +E  + E       PSGKL IA    L  + L    K  
Sbjct: 62  GEVFYQHISKMQQNASEAIKSIELLREE-------PSGKLTIACASGLIDSGLSQIFKPI 114

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           L  YP+  + ++ +++ +D+     D A+R  + I ++++I R L   H    A   Y+ 
Sbjct: 115 LTQYPEFTLDILFEDRVLDLLDKRIDIALRAGEGILANNMIARHLYDFHWKIVAHRDYVA 174

Query: 176 NCREPLSIQELDKHNLITFGD 196
               P ++ EL + + I F +
Sbjct: 175 EKGIPQNLTELAQLDWIGFSN 195


>gi|190574073|ref|YP_001971918.1| putative LysR family transcriptional activator [Stenotrophomonas
           maltophilia K279a]
 gi|190011995|emb|CAQ45617.1| putative LysR-family transcriptional activator [Stenotrophomonas
           maltophilia K279a]
          Length = 300

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 117/266 (43%), Gaps = 9/266 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ S+ S+ I+ LE  +G +L  R+ R ++LT +G +       +  ++   + EL ++ 
Sbjct: 28  ITPSAASKTIARLEERLGARLLNRNTRSVSLTAEGEQFLERCRRIMIEVAAAERELTDAH 87

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             PSG+L++  ++ L   L+   L  F   +P I++ L   ++ +D+  +  D  +R   
Sbjct: 88  AAPSGRLKV--SLPLASGLMLPVLSAFAQRFPAIELDLHFSDRMVDVIEEGFDAVVRTGS 145

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P  S  L  R L +  +    AP Y      P    +L  H  +      P       W 
Sbjct: 146 PADSR-LHGRNLGSTRLLCVGAPAYFARRGTPQHPDDLSGHACLLH--RFPGTGLIERWP 202

Query: 209 ATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVIT 264
                   E R++     ++L +I+   + G GIA LPD+  +   D  +LV +++   T
Sbjct: 203 LPAREGGAETRLTAAMTANHLETILHMAIDGHGIACLPDFATRDALDRGSLVSVLDPWST 262

Query: 265 PSFTVYFCYPEALKNTGKLKAFRNFI 290
              T +  +P       +++ F +F+
Sbjct: 263 ERSTFWALWPSHRHQQPRVRVFVDFM 288


>gi|146306559|ref|YP_001187024.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574760|gb|ABP84292.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 307

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 7/189 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +G F  AA++   S SS+S  +  LE E+G++L  R  RGLT TE G++L   
Sbjct: 11  LFAAVVEAGGFRAAAQRRGTSASSLSDCVRRLEQELGVRLLNRTTRGLTPTEIGARLLER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 ++     +LQE    P G LR+     + +++L   L  FL  YP I +++ +D
Sbjct: 71  LRPALDEINAALNDLQEDPQHPVGSLRLHVPGVIARHILPPLLDGFLARYPGIALEVNMD 130

Query: 130 NKDIDISMDYADCAIR----LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           N  ID+     D  IR    L K + +  +  R+   +   A AAP YL+    P    E
Sbjct: 131 NTFIDVIGAGYDAGIRYEESLAKDMIAIPIGPRRQCFM---AVAAPSYLQRHGTPQHPGE 187

Query: 186 LDKHNLITF 194
           L +H L+ +
Sbjct: 188 LSEHRLLGY 196


>gi|261867377|ref|YP_003255299.1| LysR protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412709|gb|ACX82080.1| LysR protein [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 296

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 126/279 (45%), Gaps = 8/279 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V ++GSF  AA +L ++ S++S+ +  LE  + ++L  R  R ++ T  G KL    
Sbjct: 14  FIQVVQAGSFAKAANKLGVTSSALSQNVKSLEKSLDLRLLNRTTRSISPTNAGEKLLAQI 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           +  +H +     +L +    P G +RI T+      LL   LK  +  YP+++I+++++N
Sbjct: 74  TPHFHAIVGGLNQLDDWRNSPLGTIRINTSEVAANLLLYPKLKTLMQRYPELKIEMVVEN 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +DI     D  +RL   +    +  +    + M   A+P YL+      +I +L  H 
Sbjct: 134 RWVDIVEQGFDMGVRLGYALYKDMIAVKISDPVRMAVVASPDYLRGKPSVQAIADLPAHL 193

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           LI            + +    +R   +P      VN+ L   Q  + G GIA LP  +V+
Sbjct: 194 LIGLRLSNQHGEAHWEFQHKGERITFQPE-PHFSVNNGLR-HQAALDGLGIAWLPKIVVE 251

Query: 251 DNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +     LV ++++       +Y  YP      G  +AF
Sbjct: 252 KDLEAGWLVELLDEYAMEYEPLYLYYP---NRQGHSRAF 287


>gi|254250367|ref|ZP_04943686.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124879501|gb|EAY66857.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 330

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 124/292 (42%), Gaps = 19/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AAE+L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 47  LLVFEAAARHESYTRAAEELSLSQSAISRQMQTLEDQLGVPLFRREGRSVKLTEVGRRYF 106

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L  F   +P + + L 
Sbjct: 107 AELSGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHGFYAAHPGVTVHLH 165

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK----NCREPLSI 183
                ID   D  D AI +        L   +L    + A A P   +    + R P   
Sbjct: 166 SRIGAIDFLHDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIAPPDTGRGRKADARTPAWA 224

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
               +  L+          E F+      R +   RI    ++ S+L  +Q    G GI 
Sbjct: 225 A---RQTLLGVTSNQQAWAEWFSHYRLEHRQM---RIGPSFELTSHL--IQAVRAGMGIG 276

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L+P  +V+D      LV I  D IT   + Y  YP   +    L AFR ++ 
Sbjct: 277 LVPKVLVEDELSRGELVPI-GDAITSQRSYYLVYPPGNETLPSLVAFREWLL 327


>gi|77458299|ref|YP_347804.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382302|gb|ABA73815.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 308

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A +GSF+ AA  L L+ +++SR ++ LE  +G++LF R  R L+LTE G   
Sbjct: 17  NLESFVRSAETGSFSAAARLLALTPAAVSRNVAILERNLGVRLFQRSTRKLSLTEVGESF 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     L+     +     +P+G L+I+     G + +   L EFL  YP I+ + 
Sbjct: 77  LASIGGNLDALQAAIATVATERGEPAGVLKISLPPTFGIDHMLPLLPEFLARYPLIRPEW 136

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +N+ +D+  +  D AI     + +  ++ R L +  + A A+P YL     P    +L
Sbjct: 137 HFENRQVDLIAEGYDVAIDGGFEL-TPGVVARPLSSAEVLAVASPAYLAGRTLPRHPADL 195

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIA 242
             H  I    L    +  +     +    GE   + L     +N  +++ +  +LG G+ 
Sbjct: 196 ADHQGIVMRGLRTGRLRQWQ----MHNETGEQASALLNPSIVLNDPMAMRKAALLGLGVT 251

Query: 243 L--LPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  LPD   + +   LV+++ D    +  +   YP       K + F +F+
Sbjct: 252 MLVLPDVSAQIERGELVQLLPDWQCDAGAISLYYPSRTLLPAKTRVFIDFV 302


>gi|307727973|ref|YP_003911186.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588498|gb|ADN61895.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 321

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 20/287 (6%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SF+  A +L +  S++SR IS LE ++GI LF R  RGL LTE G             L+
Sbjct: 18  SFSKTANELSVKTSTVSRYISELEKDLGIALFNRSTRGLVLTEGGRLFREHALLALQALD 77

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
             +      +  P G LR+      G+  +  +L  F+  YP I + ++  ++ +++   
Sbjct: 78  DAREVTSSLNRSPQGVLRVTIPPAFGRLHVVPHLPAFMSRYPHIDLDIVSTDETLNMIDA 137

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D AIR    +  SSL+ R+L         +P Y +    P +  +L  HN +    L+
Sbjct: 138 GIDVAIRTGV-MPDSSLMARRLAPHRRIVCGSPGYFERNGIPRTPDDLSAHNALRL-SLM 195

Query: 199 PKCMEDFNWLATVDRP---IGEPRISCLQ----VNSYLSIMQYCVLGSGIALLPDYIVKD 251
           P     F   A   +P   + E  +  L+         +++   V G GIALLP ++   
Sbjct: 196 PDDKWFFARSAVKLKPAQKVSESMVVELKGRVRAGDQEAVLALAVAGCGIALLPTWLAGA 255

Query: 252 NPNLVRIMEDVITPSF---------TVYFCYPEALKNTGKLKAFRNF 289
           +    R+ +  + P +          V+  YP     + K++AF +F
Sbjct: 256 DLRTGRLQQ--VLPQWEARTGRAAPAVWAAYPPKKVVSSKVRAFVDF 300


>gi|89075836|ref|ZP_01162220.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89048457|gb|EAR54033.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 313

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 1/189 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  S SF+HAA+ L ++ S +SRQIS LE E+ ++L  R  R  +LT  G + +
Sbjct: 13  IAAFVTVVESESFSHAAKNLGMTPSGVSRQISRLEKELQVQLIKRSTRSQSLTIAGQEAY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  + +       +      G L IA+     + +LQ  L EF+  YP +Q+++ 
Sbjct: 73  QYGKNILQQAQDVVNIASKQKQDIEGILTIASPKAFCRQVLQPLLLEFVDTYPKLQLKIQ 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +K ID      D   RL    Q ++L+ ++L T  +   A+P+YL+    P   ++L 
Sbjct: 133 VTDKPIDPLYHDVDVVFRLTNEPQ-NNLVAKQLATNDLVLCASPYYLEKKGTPTHPKQLA 191

Query: 188 KHNLITFGD 196
           +H+ I  G+
Sbjct: 192 QHDCIYLGE 200


>gi|187925996|ref|YP_001892341.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241665481|ref|YP_002983840.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187727750|gb|ACD28914.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240867508|gb|ACS65168.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 298

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 8/178 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  WD +R F V+AR GS + AA +L +  ++++R+   LE  +G++LF R  RG  LT 
Sbjct: 8   SLQWDDVRYFLVLAREGSLSAAARRLGVEHTTVARRADALEQSLGVRLFDRLPRGWRLTA 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLL 118
           +GS L    +E   ++E        ++       G +RI+    +  +++  NL      
Sbjct: 68  EGSAL----AERAERMEQEAASFARAAAGAGSLRGTVRISAPPTVASHVIAPNLTLLRKQ 123

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           +P I + L+ + ++ ++    AD A+RL +P  +S+L  R L ++    YA P  L  
Sbjct: 124 WPGIDLVLLGEKRNANLMAHEADLAVRLSRPT-ASTLAARPLGSLGYGLYATPEVLAQ 180


>gi|66043926|ref|YP_233767.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63254633|gb|AAY35729.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|330971657|gb|EGH71723.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 307

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 4/197 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + +S +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDMSAAVASAALKRIERQLGTRLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  L  S  +  G L+++   DLG+N+L   L EF   +P + +
Sbjct: 64  GFLEYARAALGSLEEGRRLLASSQDRCEGVLQLSAPSDLGRNVLLPWLDEFQQQHPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSL+   ++  +     AAP YL+   EP  +
Sbjct: 124 RLLLGDRIADLFRQPVDVALRYGEP-EDSSLVALPVLPDNRRVLCAAPSYLQRHGEPHQV 182

Query: 184 QELDKHNLITF--GDLI 198
           ++L +HN + F  GD +
Sbjct: 183 EQLAQHNCLLFMLGDRV 199


>gi|255292726|dbj|BAH89832.1| LysR family transcriptional regulator [uncultured bacterium]
          Length = 298

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 133/294 (45%), Gaps = 21/294 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+LR F   A++GSFT AA QL +S    S+ ++ LE  +G +L  R  R + LT  G  
Sbjct: 5   DELRAFVATAQTGSFTAAAHQLGVSNRLTSKYVAALEQRLGSRLLQRTTRKVGLTPAGED 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   L+     + E S   +G +RI+  +  G+  + G L  F    PD+ + 
Sbjct: 65  LIARAPALLDDLDELLGSVAEGSRGLTGVIRISAPVTFGEVYVTGMLARFARQNPDLTLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD++ +D++ D  D A R+ +     SL   +L T      A+P Y++   +P S +E
Sbjct: 125 LRLDDRYVDLASDGFDLAFRIGRS-DMLSLKTLRLGTFSSLLVASPDYVRAHGKPGSPEE 183

Query: 186 LDKHNLITFGDLIPKCMEDFN------WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           L  H           C+ D N      W+   +      +I    QVNS  + M   + G
Sbjct: 184 LADHT----------CIVDTNRRVPHRWIFVRNGVETNVQIHGRFQVNSARAAMDLAIGG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GIA +P + +    +  +LV ++E+    S  V   Y E      K++A  +F
Sbjct: 234 LGIANIPRFALSNAIETGSLVPLLEEFGGDSGPVSAAYLEGRALPRKIRALIDF 287


>gi|160895248|ref|ZP_02076020.1| hypothetical protein CLOL250_02808 [Clostridium sp. L2-50]
 gi|156863127|gb|EDO56558.1| hypothetical protein CLOL250_02808 [Clostridium sp. L2-50]
          Length = 346

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 13/155 (8%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VFY+VA++GS + AA QL++SQ ++S+ IS LE  +GI LF R++RG+ LTE+G+ L+ 
Sbjct: 9   NVFYMVAKTGSISRAANQLYISQPAVSKAISNLEENMGIALFVRNSRGVALTEEGTILYD 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL-- 126
                   +   +  L++ +    G +RI  +  L +++L   LK F+   P+I++ +  
Sbjct: 69  YIERALDNIIKGEESLKKYNELGIGHIRIGVSTSLCKHILLDYLKPFIKDNPNIKVSIDC 128

Query: 127 --------ILDNKDIDISMDYADCAIRLRKPIQSS 153
                   +L N++IDI +    C   L K I  S
Sbjct: 129 HSTKNTIRLLKNEEIDIGL---ICETELPKNITYS 160


>gi|114562790|ref|YP_750303.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334083|gb|ABI71465.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 294

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSFT AA   ++  SS+SR+++ LE  +G  L  R  R + LTE G   +
Sbjct: 1   MRYFSKVVETGSFTKAASAFNVPPSSLSRRVADLEKSLGATLLKRSTRIVKLTEVGQIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++ ++L  +   ++     P G+LRI++ +  G  +L   L EF  LYP I + + 
Sbjct: 61  NDVQQILNQLAQSHETVRSYQTTPMGRLRISSMVGFGDKILLPLLDEFSTLYPQIVLDVS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++   +  D  D AIR         L  R L+       A+P Y++    P +  EL 
Sbjct: 121 FSDELSTLGRDDVDIAIRGGYAPNERVLAIR-LMDNGFIPVASPSYIEKHGIPNNAMELT 179

Query: 188 KHNLITF 194
           +HN + F
Sbjct: 180 QHNGLYF 186


>gi|332304572|ref|YP_004432423.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171901|gb|AEE21155.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 294

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 128/295 (43%), Gaps = 22/295 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F  +  +     AA  L++S +++S ++S LE  +G  L YR +R +  + +G +
Sbjct: 5   NELETFIAIVENKGVVSAASALNISPATVSHRLSKLERILGTVLIYRDSRNVRPSAEGEE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   L   +  +        G+LR+     +    +   L +F   YPDI + 
Sbjct: 65  FYQRVGDILAALHDAEFAIGARDSAIGGRLRVTLPPWIFSIFILPKLAQFEQQYPDIVLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++ ++ +++  D  D AIR+   + SS L+ RK+V       A+PHYLK       I+ 
Sbjct: 125 FLVTDQFVNVVDDAQDVAIRV-GTLASSGLLARKIVNNKRILCASPHYLKQHPPITDIES 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239
           L  H  +              W   +     +  +     N+  +I       Q    G 
Sbjct: 184 LSTHRFVALP-----------WQKQLKLLQNDGNVFSFNSNTRFTISNSDNMTQALRAGH 232

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  +  +K    +  LV ++ +V+ +P   V+F  P+    T K +AF +F+
Sbjct: 233 GIGIKSEIAIKQCIASGELVEVLPNVLASPEAPVWFLRPQNSLATRKAEAFYDFV 287


>gi|308175559|ref|YP_003922264.1| hypothetical protein BAMF_3668 [Bacillus amyloliquefaciens DSM 7]
 gi|307608423|emb|CBI44794.1| Uncharacterized HTH-type transcriptional regulator ywbI [Bacillus
           amyloliquefaciens DSM 7]
 gi|328555537|gb|AEB26029.1| hypothetical protein BAMTA208_19405 [Bacillus amyloliquefaciens
           TA208]
 gi|328913910|gb|AEB65506.1| Uncharacterized HTH-type transcriptional regulator ywbI [Bacillus
           amyloliquefaciens LL3]
          Length = 302

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 67/127 (52%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VAR  SFT A++ L++SQ +IS+ I  LETE+GIKLFYR+ R + LT+ G
Sbjct: 2   DIRHLTYFLEVARLKSFTKASQSLYVSQPTISKMIKNLETELGIKLFYRNGRQVELTDAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             ++    E+    +    EL +      G +RI     +G       L +F + YPD+ 
Sbjct: 62  QSMYVQAQEITKSFQNLTSELNDIMEVKKGHVRIGLPPMIGSGFFPRVLGDFRVTYPDVT 121

Query: 124 IQLILDN 130
            QL+ D 
Sbjct: 122 FQLVEDG 128


>gi|241761698|ref|ZP_04759785.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374006|gb|EER63539.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 303

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 1/191 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA  GSF  AAE + LS+ ++S+ +S LE  +G  LF R++R ++LT+ G
Sbjct: 5   DFEAWAIFAKVAELGSFARAAEAIQLSKPTVSKAVSRLEQSLGSALFNRNSRHISLTDLG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +++  + E  + E +    +PSG ++IA     G   L   L +FL  YP+I 
Sbjct: 65  RSLLGHANKIIAEAEMAETEARGGIQRPSGLIKIAAPTTFGLWHLSPVLPDFLAQYPEID 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +   +  +D+  +  D A+R+   +  S+L  R+L  + +   A   YL     P   
Sbjct: 125 ISIDFSDALVDLVGEGYDIALRIAS-LADSALRARRLCPVRLLLVATSDYLDRIGRPQHP 183

Query: 184 QELDKHNLITF 194
           + L+K     +
Sbjct: 184 KALEKQKSFVY 194


>gi|238894774|ref|YP_002919508.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547090|dbj|BAH63441.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 301

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 119/273 (43%), Gaps = 7/273 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +R+F  V   GS + AA  L + Q ++S +I  LE  +G +L  R+ R ++LT+ G+
Sbjct: 4   FSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTQSGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +       E   + + E +    GK+RIA     G++LL   L +    +P +Q+
Sbjct: 64  VFYERSKTAVQAAEHA-LSVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPALQV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +I +++ ID   +  D ++RL   +     + R L T+     A+P  L     P +  
Sbjct: 123 DVIFNDRVIDPVTEGVDLSLRLGD-VSEGFFVARPLGTVRRVLLASPALLAKMGHPDTPD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  +       +          +A+ D+ I  P     Q   + S++ + + G  I +L
Sbjct: 182 ALTDYPFAAVSGVF--ASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
              + +    +  L+ ++     P F+ +  +P
Sbjct: 240 QSPVCRKEMADGALIPLLSHYPIPPFSAWLLHP 272


>gi|221209527|ref|ZP_03582508.1| HTH-type transcriptional activator AmpR [Burkholderia multivorans
           CGD1]
 gi|221170215|gb|EEE02681.1| HTH-type transcriptional activator AmpR [Burkholderia multivorans
           CGD1]
          Length = 300

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 113/241 (46%), Gaps = 14/241 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT A  +L ++Q+++S+Q+  LE  +G  LF R  RGL LT++G  
Sbjct: 11  NALRAFESSARHLNFTRAGLELSVTQAAVSQQVRALEERLGCALFTRLPRGLDLTDEGRA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+ + ++ET   +     ++    L +  T  LG   L   LK F   +P ++++
Sbjct: 71  LLPVLSDAFSRIETVLQQFDGGRLRQVLTLGVVGTFALG--WLMPRLKRFRDTHPFVELR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N  +D++ +  D AIR  +    ++  +R L    + A  AP   +  R+P    +
Sbjct: 129 LRTHNNVVDLAAEGLDFAIRFGQGNWPATRNER-LFDAPLTALCAPDIARRLRQP---AD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L+       +      WL   D    EP  ++    +S   +++  + G GIAL 
Sbjct: 185 LAHETLL-------RSYRTDEWLGWFDAAQLEPWTVNGPVFDSSRLMVEAAMQGVGIALA 237

Query: 245 P 245
           P
Sbjct: 238 P 238


>gi|170697355|ref|ZP_02888447.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137686|gb|EDT05922.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 307

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 18/199 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V   GS + AA  L + QS++S +I+ LE  +GI L YRHAR LT T +G   +
Sbjct: 10  MRIFVRVIERGSISVAARDLDMGQSTVSERINRLEEYLGIPLLYRHARTLTRTSEGEAFY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +      ++      QE   +  G  RI     LG+ +L   L E    YP + I L 
Sbjct: 70  SSSKAALDAVDDALAVAQEHR-EVRGTFRIGAPQGLGEIILPPVLLEIKAQYPGLYIDLD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSL------IQRKLVTIHMHAYAAPHYLKNCREPL 181
           L++  +D      D ++RL +P +          ++RKLV       AAP YL +  E  
Sbjct: 129 LNDSIVDPVTAGVDISLRLGRPAEGRGAKYRIGHVRRKLV-------AAPSYLAHYPEIE 181

Query: 182 SIQELDKHNLI----TFGD 196
              EL +H  I     +GD
Sbjct: 182 DPHELSQHRFIRVRGVYGD 200


>gi|148547130|ref|YP_001267232.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511188|gb|ABQ78048.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 301

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 12/242 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  VA   SF  AA  L  S S+++R +  LE   G KL  R+A  +TLTE G +L
Sbjct: 8   EIQAFVSVAHKRSFVAAARALGRSPSAVTRAVQTLEDNAGSKLLNRNANAVTLTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +         EL   S    G +R A    LG+++L   L EF   +P + + +
Sbjct: 68  LPHAERLLDVQRDAADELAALSGNAQGWIRFAAPQLLGEHVLPQVLAEFSRRHPQVTLDV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D      D  +R   P QSS LI   L     H YA+P YL     P   ++L
Sbjct: 128 QYSDEALDPLQGKFDFVVRGAFP-QSSELIGYPLWPYQRHLYASPAYLALAGTPQHPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           D H LI      P+ ++ +++      T  RP   PR   L++ S  ++    + G+GIA
Sbjct: 187 DGHTLILH--TAPRILKAWHFCHDDQITSLRP--RPR---LRLGSGGAVYHSTLAGAGIA 239

Query: 243 LL 244
            L
Sbjct: 240 RL 241


>gi|107028330|ref|YP_625425.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686326|ref|YP_839573.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897494|gb|ABF80452.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652041|gb|ABK12680.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 321

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VAR GSF  AA +LH++  ++ +QI  LE   G+ LF R  RG+ LT++G+ 
Sbjct: 25  NALRAFDAVARHGSFAGAAAELHVTHWAVGKQIRLLEDWFGLPLFDRRPRGVALTDEGAA 84

Query: 66  LHRVTSEVYHKLETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L    S  + +L T  + L+ ++   + SG +R+   +      L   L +F   YPDI 
Sbjct: 85  LLNDVSHAFERLGTAVVRLRHNTFTHRISGVVRVNVPMSFAFCWLLPRLADFHSRYPDID 144

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV 161
           +++   ++ +    D  D  +R   P Q + ++ R L+
Sbjct: 145 VRVSTTSRKLRYVADAFDIGVR-SGPEQGAGVVSRPLM 181


>gi|47570132|ref|ZP_00240789.1| transcription regulator LysR family VC1617, putative [Bacillus
           cereus G9241]
 gi|47553196|gb|EAL11590.1| transcription regulator LysR family VC1617, putative [Bacillus
           cereus G9241]
          Length = 300

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 145/314 (46%), Gaps = 41/314 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H+++  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVQQARSAIQDLNGLQQGSLTIGALLTVVNYLLPTAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q    I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKETISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    + FN+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTV--------YFC-----YP 274
           +Q    G GI +LP    D++   N   ++I     TP+  +        Y C     + 
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIYRKDKYMCAATREFI 288

Query: 275 EALKNTGKLKAFRN 288
           E LK+T  +++F+N
Sbjct: 289 EQLKST--VRSFQN 300


>gi|294101208|ref|YP_003553066.1| transcriptional regulator, LysR family [Aminobacterium colombiense
           DSM 12261]
 gi|293616188|gb|ADE56342.1| transcriptional regulator, LysR family [Aminobacterium colombiense
           DSM 12261]
          Length = 304

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 131/269 (48%), Gaps = 16/269 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++LRVF  +   GSF  A E+L LSQ S+S+ I+ LE    +KLF R  R ++LT +G
Sbjct: 2   NLNQLRVFCAIVEEGSFRQAGEKLFLSQPSVSQYIAALEKNYDVKLFLRRGRSISLTPEG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+ +  +++  ++    + +E  +   G+L I TT   G+  L   + E+   +P I+
Sbjct: 62  RTLYILAQDLFKLVDAVPEKFREMQLLKYGELCIGTTPTCGKTFLPLIMSEYRHKFPHIK 121

Query: 124 IQLILDNKDIDISM---DYADCAIRLRKPI--QSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +Q+   N++  ++M   D  + A     P+   SS+L  + L        A P +     
Sbjct: 122 VQIKTANEETLLTMIEKDEIELAFFGHNPLLSPSSTLTMQSLGRSSFALIAPPDHPWAQW 181

Query: 179 EPLSIQELDKHNLITFG-DLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           + +S  +L + N I++  D    C + DF     ++  +  PR++  QV++   ++Q   
Sbjct: 182 KIISPAQLLEENFISYSKDTAHYCFVNDF----FLNNKLKTPRLT--QVDNEELLLQLVT 235

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITP 265
            G G+ +  +  V+     V+  E +I P
Sbjct: 236 QGFGMGIAMEIAVRKE---VKQKEVIILP 261


>gi|270263679|ref|ZP_06191948.1| LysR family transcriptional regulator [Serratia odorifera 4Rx13]
 gi|270042563|gb|EFA15658.1| LysR family transcriptional regulator [Serratia odorifera 4Rx13]
          Length = 303

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 135/295 (45%), Gaps = 16/295 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +LR F  +   GSF  AA  L ++ S++S+ +  LE+ +G++L  R  R +  T+ G
Sbjct: 5   EFAELRAFAAIVEHGSFARAAVHLGMTASALSQTLRNLESRLGLRLLNRTTRSVAPTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +++         +++    +      +P+G+LR+  T     + L   +  F   YPDI 
Sbjct: 65  AQMLARLLPAIAEIDAAVEQAVNQRQQPTGRLRLNVTRIAAMHFLAPLIAPFHRQYPDIL 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L ++++ +DI     D  +RL + ++   +  +    + M   A+P YL    +P + 
Sbjct: 125 LDLNVEDRLVDIVAGGFDAGVRLHEKLEKDMVAIKLGEDLRMRVVASPAYLARHGQPQAP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +EL +H  + F    P     + W       T+D  +  P I    V+    +++  +  
Sbjct: 185 RELRQHLCLNF--RWPTNGNLYRWEFERDGETLDIAVEGPVI----VDEPEILVRAALDS 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289
            GIA L ++ V     +  LV ++ D  TP F   Y  YP   +    L+AF +F
Sbjct: 239 VGIAYLFEHQVAAALADGRLVPLL-DAWTPPFPGFYLYYPANRQMPRPLRAFIDF 292


>gi|237509831|ref|ZP_04522546.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|235002036|gb|EEP51460.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 291

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 124/289 (42%), Gaps = 23/289 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  +  LE EVG  L  R  R L +TE G
Sbjct: 8   NLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEVGASLVVRTTRRLNVTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    ET    +   +    G LR++  +D G           L++ P ++
Sbjct: 68  RAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGA----------LVVAPALE 117

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P S 
Sbjct: 118 IELQCDDRVVDLVRDNLDVAIRLGR-LADSNHRAAKLGGFERWLVASPAFVARHGAPASP 176

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240
           + L     +    +    +E  N  A  +R      + C +    N+  +     + G G
Sbjct: 177 EALGALPYVMLSTVPRTTLELAN--AHGER----ASVRCRRAFASNTATACRAAVLAGGG 230

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +   +   D+     LVR++     P   ++  +P A   + K++A 
Sbjct: 231 FGVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRAL 279


>gi|116696209|ref|YP_841785.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530708|emb|CAJ97055.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 308

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 92/182 (50%), Gaps = 1/182 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  + + GS T AA++L ++  ++S++++GLE  + ++L +R  R ++LT +G       
Sbjct: 10  FACINKQGSLTGAAQELGVTPPAVSKRLAGLEARLRVRLLHRTTRRISLTPEGESYLVEG 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  ++E  +  +  +   P G L+I  T+  G+  +   L  F    P+I++QL L +
Sbjct: 70  ARILAEMEALERSIAGTGSTPHGLLKIGATLGFGRRHIAPALSGFSRRCPNIEVQLYLTD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +++     D  I   + +    L  R L        AAP YL+   EP S +EL +HN
Sbjct: 130 RPLNLVEQGLDAMIHFGE-MPDVRLTARLLANNRRLLCAAPSYLEARGEPSSPRELARHN 188

Query: 191 LI 192
            I
Sbjct: 189 CI 190


>gi|108762587|ref|YP_630007.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108466467|gb|ABF91652.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622]
          Length = 314

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 136/294 (46%), Gaps = 28/294 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VAR+ SF+ AA  L +S+S++S+ +  LE ++ + L  R  R ++LTE G    
Sbjct: 14  LQTFLAVARTRSFSAAARDLGISRSAVSQSVRLLEGKLRVPLVARTTRSVSLTEAG---R 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           R+       +   Q  L ++S KP    G++R+         +++  L +F   +P I++
Sbjct: 71  RLVESAGPAVTQVQAALTQASAKPGEVVGRVRLTVPRAAFHFVIEPVLPKFRERHPRIEV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYLKNCR 178
            L+ +++ +D+  +  D  +RL      S  ++R +V++ +          +P YL    
Sbjct: 131 DLVFEDRMVDLVGEGFDAGVRL------SEYVERDMVSVRLTDAFRFIVVGSPTYLGRHG 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P   ++L +H  +TF       +  + W      R    P    L VN  L  +++   
Sbjct: 185 TPGRPEDLLEHECLTFRSSTTGSL--YAWEFERGRRTWRVPVRGSLVVNDGLICIRWAEQ 242

Query: 238 GSGIALLPDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAF 286
           G G+A + + +V +     +L R++E      P F +Y  YP   +++  L+ F
Sbjct: 243 GLGLAYVMEPLVGEQLRKGSLQRVLEPYAATVPGFFLY--YPSRAQSSAPLRLF 294


>gi|162457236|ref|YP_001619602.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161167818|emb|CAN99123.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 350

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 122/298 (40%), Gaps = 38/298 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  +  +GS + AA  L  +Q ++SR++  LE  +G+ L  R    + LTE G +  
Sbjct: 52  LQTFVRIVEAGSLSAAATLLGTTQPTVSRRLQALERSLGLPLLQRSTHTMKLTEDGERCF 111

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE    +++    +P G LR+      GQ+ L   L ++L  YP + ++ +
Sbjct: 112 ERAKALLASLEAFASDMRGDRDQPDGTLRVVVPHAFGQHQLVKPLADYLRRYPRVSVEWL 171

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   +   D  DCAI L   +   +++  +L  +     AAP  L     P       
Sbjct: 172 LHDGQPNFIADGIDCAI-LVGAVADPAVVAIRLTEVPRIVAAAPSVLGRAARPAH----- 225

Query: 188 KHNLITFGDLIPKCMEDFNWLA---------TVDRPIGEPRISC-----LQVNSYLSIMQ 233
                      P  + D  WLA         T+    G  R+       +  +S  ++  
Sbjct: 226 -----------PSDLADMPWLALRTYYRDTITLTHASGGERVELAIRPRMSTDSLYALRS 274

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAF 286
             ++G G+ +   +++ D+    R++   + PS+      V+  YP A     +L+ F
Sbjct: 275 AALMGLGVCVASSWLLTDDLAQRRLLH--LAPSWQADPLPVHLVYPHARFYPARLRRF 330


>gi|170735842|ref|YP_001777102.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818030|gb|ACA92612.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 324

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 131/306 (42%), Gaps = 43/306 (14%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSF+  A+++H+S S+++R+++ +E  +G+ L +R    +TLTE G    
Sbjct: 16  MRAFVRVVETGSFSAVAKEMHVSTSTVARKVTAIEEALGVALLHRSTHSVTLTEAGHIYL 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+ + 
Sbjct: 76  ERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQLDVR 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D  I   +    + ++ R L        A P YL  C  P +  +L 
Sbjct: 136 LTDNHNDLVAGGFDLDIHEGENYLDNLVVHR-LSRNDSILCATPGYLDRCGRPATPDDLT 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI--------------MQ 233
            HN + +                   P G+PR + ++ ++  S+              ++
Sbjct: 195 HHNCLRY-----------------VHPEGDPRWALVRGDTQHSVLPAGNLVTDHSELLLE 237

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT---------VYFCYPEALKNTGKLK 284
               G GIA    ++V+D   L     + + P +          +Y  Y    +++ KL+
Sbjct: 238 ATCAGLGIAEFEIWLVRD--LLASGQLEAVLPRYRLQNRLTGEYIYIAYLANRRSSAKLR 295

Query: 285 AFRNFI 290
             ++F+
Sbjct: 296 VLKDFL 301


>gi|310825286|ref|YP_003957644.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398358|gb|ADO75817.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 306

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 133/303 (43%), Gaps = 14/303 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   L     VA   SFT AA +L ++ S++S+ +  LE  VG++L  R  R + LT
Sbjct: 1   MRDELSGLTALLAVAEKRSFTAAAAELRVTPSAVSQILRALEERVGVRLLQRTTRSVGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++           +      L E   +P+G LR+       + +L   L  FL  YP
Sbjct: 61  EAGARFLAQIGPAMKSVHEAFESLGEMRDRPTGTLRLTLPRYGYEEVLAPRLAGFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+  L +D+  +DI  +  D  IR+ + ++   +       I M    +P Y+    +P
Sbjct: 121 GIKADLHIDDAFVDIVENGFDAGIRVGERVEREMIAVPVSGDIRMTVVGSPAYVAARGKP 180

Query: 181 LSIQELDKHNLIT----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              +EL +H+ I      GD + +   +F   A   +   + R+     N +  ++   V
Sbjct: 181 KHPRELREHDCINSRGRTGDGVYRW--EFKDGAKNLKLAVDGRVF---FNEWDLMVGAAV 235

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFIFL 292
            G G+A +P+  V+       LV ++E    P F+ +F  YP       KL+A  +F+ +
Sbjct: 236 DGLGLAYVPESRVRKLLAEKRLVSVLEP-YCPLFSGFFLYYPSRAHVAPKLRALADFLRV 294

Query: 293 KAR 295
             R
Sbjct: 295 NRR 297


>gi|88798046|ref|ZP_01113633.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
 gi|88779243|gb|EAR10431.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
          Length = 295

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 5/200 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L +F  V+R GSFT A+ +L +S S+IS  I  LE ++  +L +R  R L+LTEQG+
Sbjct: 6   WSNLIIFAEVSRQGSFTKASNELGISPSAISHIIRKLEMKLDTRLLHRSTRSLSLTEQGA 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L        H LE T    Q+S  + SG+++I +     +  +   L  F   YP++ +
Sbjct: 66  RLLEKLDPSIHSLEETIDGFQDSKEEVSGRIKITSHRVGAEQGIFPKLAAFKTRYPEVSV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L +++  ID      D  IR  + +    +         +   A+  YL+    P   +
Sbjct: 126 ELDINDGLIDFIAAGFDAGIRRGESLAQDMIAVPLDYDDQLIFVASSEYLQKYGAPQLPE 185

Query: 185 ELDKHNLITF-----GDLIP 199
           +L +H  I+F     G L P
Sbjct: 186 DLTQHQTISFRYVTSGRLFP 205


>gi|54295218|ref|YP_127633.1| hypothetical protein lpl2301 [Legionella pneumophila str. Lens]
 gi|53755050|emb|CAH16541.1| hypothetical protein lpl2301 [Legionella pneumophila str. Lens]
          Length = 302

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 96/183 (52%), Gaps = 1/183 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F       SF+ AA++L++S S +S+QI+ LE E+ + L  R    LT+T+ G +L+
Sbjct: 7   LKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLVRSTTRLTVTDSGHRLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + +++ +LE  ++      ++ +G +R+  T+      L     +F+  YP I++ +I
Sbjct: 67  EKSLQLFEQLEAVKVIATPDQLELNGVIRLYLTVTPAIPYLTTLSIQFMRQYPKIEVDII 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   ++     D AI     ++ S L+ + L +I    +A+P Y+     P ++ EL 
Sbjct: 127 VGSDTKELYSSTFDLAISFDD-VKHSKLVCKMLFSIQRKVFASPAYIAQHGLPQTLDELP 185

Query: 188 KHN 190
           KHN
Sbjct: 186 KHN 188


>gi|86138088|ref|ZP_01056663.1| Transcriptional regulator [Roseobacter sp. MED193]
 gi|85825115|gb|EAQ45315.1| Transcriptional regulator [Roseobacter sp. MED193]
          Length = 291

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 126/280 (45%), Gaps = 13/280 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  GSFT AA++L +S S +SRQ+S LE  +G+KL  R  R + L++ G + H+  
Sbjct: 8   FATVAECGSFTKAAQRLRVSTSHVSRQVSALEDRLGVKLLNRTTRVVQLSDIGQRYHQQV 67

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             V   L+        +    +G +R++      +  +   L +F   +P I +++  + 
Sbjct: 68  QRVIEGLQEANQTAISTHADLAGPIRMSGAGPFVEEQVAPLLVQFAAQHPKITLEMDFET 127

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+     D AIR    +  S +I RKL +  +   A+P YL     P   + L  H+
Sbjct: 128 RLVDLVDQGFDFAIRY-GVLAESGMIARKLSSRPLVCAASPAYLDRHPAPHHPRTLRDHS 186

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIG-EPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
            +   +       D    +  D+    E R+S  ++ NS ++  +  V G G+   P   
Sbjct: 187 CLVINN-------DLWRFSDPDQKTNIELRVSGRVRANSIVAAREAAVQGLGVIYTPASN 239

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           V        LV I+ + +  + + +  YPE      +++A
Sbjct: 240 VVSQIQAGTLVEILPEFVDTTRSHWLVYPERQHMPTRVRA 279


>gi|326385816|ref|ZP_08207445.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209795|gb|EGD60583.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 298

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 132/291 (45%), Gaps = 15/291 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+  + F  VARSG    A   L    ++I R++  LET +G  LF +   G  LTE G
Sbjct: 5   DWNDYQAFLAVARSGQLARAGASLGCDATTIGRRLRRLETRLGATLFEQTREGQILTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L     E   +  +   E       P+G LR++ T      L+    K F+  +P + 
Sbjct: 65  EALL-AEVEAMAQAASRIAEQASGGGGPAGHLRVSLTEGFATALVAPAFKSFVEAFPRLT 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+  +  +  S   AD A+ L +P ++  +I  KL    +  YA   YL     P + 
Sbjct: 124 IDLVASSGLLSPSKREADLAVTLSRP-RAGPVIAGKLSDYTLGLYATRGYLAQMGTPAAP 182

Query: 184 QELD-KHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +L   H LI +   +P  +   +  +L+  +  +    ++ L+  S ++  +    GSG
Sbjct: 183 ADLAVGHRLIGY---VPDLLYAPELRYLSEFEPGL----VAALRSPSIIAQARMVAAGSG 235

Query: 241 IALLPDYIVKDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +LP ++   +  LV ++ E  IT +F  +    +   N  +++AF++++
Sbjct: 236 IGVLPCFMGDADKMLVPVLPERRITRTF--WLVTHKDTHNLARVRAFKSWL 284


>gi|303247381|ref|ZP_07333654.1| transcriptional regulator, LysR family [Desulfovibrio
           fructosovorans JJ]
 gi|302491295|gb|EFL51184.1| transcriptional regulator, LysR family [Desulfovibrio
           fructosovorans JJ]
          Length = 295

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 1/170 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A   SFT AAE L +  +++SR+I+ +E  +G++LF+R  R + LTE G +     
Sbjct: 11  FIEAANRSSFTQAAEALDIPLATLSRRIAAMEGSLGVRLFFRTTRTIALTEDGKEFLESC 70

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +    +  L +  ++PSG +R++    +    + G L +F   YP+I +  I   
Sbjct: 71  KFIMAEANGVKERLSQKQIEPSGPIRLSVEAFVYHCCMHGALGKFTKKYPNIDLHTIFSA 130

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +  D+  +  D  IR  + +    L  RKL+++H   Y    +LKN  +P
Sbjct: 131 EWKDLHREPFDLDIRTGQ-VPYPELKVRKLLSLHPALYCTADFLKNHPKP 179


>gi|170022911|ref|YP_001719416.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|169749445|gb|ACA66963.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
          Length = 303

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGALFLSHARQIIGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P+YL+    P
Sbjct: 121 QITLELNTDDLNIDLLEQRTDIAIRI-GALRDSTIHARLLGASRVRLLASPNYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
            +I+ L  H+L+ F        E  N  +    P G    I  L  +S  ++    + G 
Sbjct: 180 HTIEALADHSLLGFTQ-----PEFLNQWSLPHLPGGRSSIIPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVI----TPSFTVYF 271
           GIA L D++ +++     LV ++ D I     P   VY+
Sbjct: 235 GIAELSDFMTREDQLAGRLVEVLADQILETWQPINAVYY 273


>gi|118588109|ref|ZP_01545519.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118439731|gb|EAV46362.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 310

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 1/192 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  +A  GS   A  ++ LS S+ S +++GLE   G +LF R  R  TLTE G  
Sbjct: 4   EDLQFFVRIAELGSMAAAGREIGLSPSAASTRLTGLEKAFGSQLFARTTRRTTLTEAGRV 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +       ++E  +  L+ S+  P G LR +     G+  +   L EF  LYPDI+++
Sbjct: 64  LLQHARTAVGEIEQARSILEASTEAPRGSLRFSCNTFFGRKHILPYLVEFHELYPDIRLE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D A+R   P+  SSL+ RKL        A+P YL     P + ++
Sbjct: 124 MDFSDRIVDVIEEGYDMAVR-GAPLTDSSLLARKLGGNPRALCASPDYLARKGVPRTPED 182

Query: 186 LDKHNLITFGDL 197
           L  H+ I    +
Sbjct: 183 LANHDCIAMASM 194


>gi|90413504|ref|ZP_01221495.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90325436|gb|EAS41919.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 302

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 132/298 (44%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V+  +     ++ E   K  G L I+         L   L +F   +P+I ++
Sbjct: 69  YFLDIKDVFSAISEATDKVLERGAK--GALTISLPPSFAIQWLVPRLADFNEQHPEIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   + D     D  D AI   +    + L   KL   ++    +P  L   +   S+ +
Sbjct: 127 IKAVDLDEGSLTDDVDVAIYYGRG-NWTGLRADKLYQEYLLPVCSPMLLTGIKPLRSLSD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS------YLSIMQYCVLGS 239
           L  H L+   D   K  +++         +    +S + VN          ++Q  V G 
Sbjct: 186 LKLHTLLH--DTSRKEWKNY---------VRHYELSDINVNQGPIFSHSTMVLQAAVHGQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIAL  + + +   D   LV   ++++      Y    E    TG+++AFR+++  KA
Sbjct: 235 GIALGNNVLAQPELDAGRLVCPFDEILMSKNAFYLVCQERQAETGRIQAFRDWVLAKA 292


>gi|37675879|ref|NP_936275.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37200419|dbj|BAC96245.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 304

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 16/250 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SGSF+  A++L +S SS+SR I+ LE  +  KL  R  R + L+  G ++
Sbjct: 12  EMAIFVNVVESGSFSKTAQKLGVSPSSVSRSITRLENVLEKKLLERTTRQMRLSATGQEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           + + S++ +  +      Q    + SG LRIA    L + +L   + +F+  +P + +QL
Sbjct: 72  YSLCSDMLNAAKMAVSAAQTDKSEASGSLRIAAPKALSRQVLMPLVLDFIAEHPKVALQL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            + +  ID   D  D  I++  KP +   L+ R L    +   A+P YL+    P    +
Sbjct: 132 KVADHYIDPIGDEVDVIIQITDKPTE--GLVARSLGRCRLVLCASPDYLQQQGTPNHPDD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL----SIMQYCVL-GSG 240
           L  HN +  G+  P+   D  W    D  IG  +IS     S+      I +  VL G G
Sbjct: 190 LVWHNCLCLGE-NPR---DRVW----DFTIGSRKISVNVKGSFAVNHSEIRREAVLRGLG 241

Query: 241 IALLPDYIVK 250
           I++ P++ ++
Sbjct: 242 ISVFPEFAIR 251


>gi|115359555|ref|YP_776693.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284843|gb|ABI90359.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 327

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 120/282 (42%), Gaps = 14/282 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT 
Sbjct: 26  GYRFELMETFVRIVEAGSLSAAAAQLHTTQPTISRRLQALERSLGMRLLQRTTHAMRLTV 85

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      E+       + +L+ +  +P G LR+A     GQ      L  FL  YP 
Sbjct: 86  DGERCFTRAKELLTNWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVEPLARFLRDYPR 145

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ +L ++  D      DCAI++ +P    S++  +L  +     AAP  L     P 
Sbjct: 146 VSVEWLLQDEVRDFVGSGIDCAIQVGEPTD-PSVVAIRLSKVPRFVVAAPSVLNGADVP- 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVL 237
              + D    + +  L      +     TV     R    PRI+    N Y ++    +L
Sbjct: 204 --ADPDALAALPWLALRTYYRTELTLTHTVTGDTRRIAMRPRITT--ANLY-ALRSAALL 258

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
           G G  +   +++ D+     LV +  D       VY  YP A
Sbjct: 259 GVGACVGSSWMLADHLARGELVHLAPDWYAAPLPVYMTYPHA 300


>gi|331014484|gb|EGH94540.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 280

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 121/267 (45%), Gaps = 13/267 (4%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH-RVTSEVYHKLETTQIELQ 85
           + + +  ++R I  LE  + ++LF R  R + LT +G + + RV S +    ETT +  +
Sbjct: 1   MQVGRPHLTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFYERVKSNLADLAETTSMFDR 60

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
             S    G+LRI       Q      L+ F   +PDI + L + ++ +D+  +  DCA+R
Sbjct: 61  NGSTL-RGRLRIDIPAAFSQRSFMETLRGFTRAFPDIDVVLGVTDRTVDLVAEGIDCALR 119

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
           + + +  SSL+ R +    M   AAP YL+    P ++++L +H  ++F  L  +     
Sbjct: 120 IGE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTPETLEDLKRHCGVSF--LSGQNNRPL 176

Query: 206 NW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
            W   L   D P   P    + VN   + +Q  + G GI   P   V+    +  LV ++
Sbjct: 177 PWHFSLNGEDLPY--PAQGAITVNESNAYVQCGLAGFGILQAPGITVESFLASGELVEVL 234

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAF 286
           E        V   YP       +++AF
Sbjct: 235 EAYRPLPRPVSVLYPSRTHLAPQVQAF 261


>gi|126461509|ref|YP_001042623.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103173|gb|ABN75851.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 296

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 21/190 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG---- 63
           L     +AR GSF  AA  L +S +++S  ++ LE  +G++LF+R  R + LTE G    
Sbjct: 8   LEAVLAIARKGSFRAAALDLGVSTTALSHTVARLEAGLGVRLFHRTTRSVALTEAGREFV 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +++    +E+   LET    ++     PSG LRI  ++  G+ +    L  FL  YP+++
Sbjct: 68  ARIAPALTEIRAALET----VRSQRATPSGMLRINASVQAGRAVAPLVLA-FLRRYPEMR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-----HA-YAAPHYLKNC 177
           + L+ + + +DI  +  D  IR       + L+ R ++ + +     HA  A+P +L   
Sbjct: 123 VDLVTEGRLVDIVAEGFDLGIR------PADLVPRDMIALPLGHPVRHAVVASPDWLVRH 176

Query: 178 REPLSIQELD 187
            EP S  +LD
Sbjct: 177 PEPRSPADLD 186


>gi|329298543|ref|ZP_08255879.1| putative transcriptional regulator [Plautia stali symbiont]
          Length = 301

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 116/275 (42%), Gaps = 13/275 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF ++ R  SF  AA +L ++ S+IS  +  LE  +G++L  R +R +  T+ G+   
Sbjct: 12  LNVFLLICRRKSFRLAALELGVTTSAISHTLRSLEARLGMRLLNRTSRAVVPTDAGAAFL 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R     + ++E    +L      PSG+LR+    D GQ L +  L  F+  YP++ +++ 
Sbjct: 72  RHLETGFAQIELALNDLHLYRESPSGRLRLNIPPDAGQLLFRPLLARFMATYPELSLEIT 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +DN  +DI     D  IR    +    +       +     A+P YL++        +L 
Sbjct: 132 VDNNLVDIIGSGYDAGIRYGVSVPKDMIAMPLTPKLRWIVVASPDYLRDAPPLQHPDDLR 191

Query: 188 KHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H  I      G L    +        VD P        L +N    I+     G G+  
Sbjct: 192 NHRCIRMRLGNGTLYKWPLAQGKVAYEVDVP------GTLTLNESDMIIDAVAGGYGLGY 245

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
            P+  V+    +  LVR++ D  +    +   YP+
Sbjct: 246 CPERYVQAQLASGQLVRVLTDWCSEDEPLVMYYPD 280


>gi|254472630|ref|ZP_05086029.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211958094|gb|EEA93295.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 300

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 123/298 (41%), Gaps = 28/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  +A++GS   AA  L +  S++S Q+  LE ++G  LF R  R +TLT+ G  L 
Sbjct: 8   LEVFNAIAQNGSLRGAANALGIKPSTVSHQLKSLEEQLGTALFVRTTRSVTLTDAGRALQ 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  L     + +E      G LR+     +    L   L  F   YP+IQ++  
Sbjct: 68  SGAGAAFDLLGQAVEDAKEYGSSARGSLRLTLPEFVFHTFLADLLPGFQAKYPEIQLEFS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH------MHAYAAPHYLKNCREPL 181
           L +  +DI  +      R      + SL+ + ++ +       +    +  YL     P 
Sbjct: 128 LSDAIVDIVSEGLHAGFR------TGSLVAQDMIALRISDPQPLTVLGSKTYLDQHGRPE 181

Query: 182 SIQELDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYC 235
             ++L  H  I     T G L P       W+  VD    E  +   L +N+  S ++  
Sbjct: 182 KPEDLLDHACIQYRFQTSGQLAP-------WVFQVDGDRVEIDVKGGLVLNTLPSQLELM 234

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G G+AL   Y      D   + R++ED + P   +Y  YP   K+   L+ F + I
Sbjct: 235 EQGMGLALTFRYYALMQCDETKVERLLEDYLDPVAPLYLFYPREYKDLQPLRLFIDHI 292


>gi|91790306|ref|YP_551258.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699531|gb|ABE46360.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 302

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 95/191 (49%), Gaps = 1/191 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+D + +F  VA  G+ +  A +  +  S +SR ++ +E   G +L +R   GL  T +
Sbjct: 4   LDFDDMHLFARVAELGTLSAVAREREVPVSQVSRTLARIEKACGARLIHRSTHGLAPTAE 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +    +   L+  + E  + + + SG +R+A +  + + LL  +L      +P +
Sbjct: 64  GETFLQYCRRIIGTLDELEGEFAQQTQQASGWVRVAASTVMAEYLLVPSLASLHQRHPRL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++  ++++ +D++ D  D AIR   P  + +++ R++  +    YA P YL+    P  
Sbjct: 124 CVEFQVEDRLVDMAHDGIDIAIRTGVP-PTDTVVARQIGALGRRLYATPGYLQAHGTPRH 182

Query: 183 IQELDKHNLIT 193
             EL +H LIT
Sbjct: 183 PDELRRHELIT 193


>gi|85710962|ref|ZP_01042023.1| LysR-family transcriptional regulator [Idiomarina baltica OS145]
 gi|85695366|gb|EAQ33303.1| LysR-family transcriptional regulator [Idiomarina baltica OS145]
          Length = 295

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 90/189 (47%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L  F   A   SF  A+++L+L+ S++S  +  LE  +  +L  R  R ++LTE G K
Sbjct: 7   NELLAFQKTASRLSFKKASDELNLTPSTVSHLVRSLEERLKTRLLNRTTRSVSLTEPGQK 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + + + L     EL     +P+G +RI+        LL    KEF   +P++ ++
Sbjct: 67  LFGQLNSILNNLTQAVDELDTDDKQPNGTIRISVNEIAAPILLDKLGKEFRETFPNVHVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI+DN+ ID   +  D  IRLR  +    +    +        AA  Y++    P    +
Sbjct: 127 LIVDNRLIDTVAEGFDAGIRLRDTVPQDMVAVPVIKDFRFVVAAATTYIEKHGLPTQPSD 186

Query: 186 LDKHNLITF 194
           L +HN I F
Sbjct: 187 LLEHNCIGF 195


>gi|271967427|ref|YP_003341623.1| LysR family transcriptional regulator [Streptosporangium roseum DSM
           43021]
 gi|270510602|gb|ACZ88880.1| LysR family transcriptional regulator [Streptosporangium roseum DSM
           43021]
          Length = 295

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 70/125 (56%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + LR+   VAR+GSFT AA +L+ +QS++SR+I+ LE + G  LF R ARG+ LT  
Sbjct: 2   FDIEALRLLDAVARAGSFTGAAARLNYTQSAVSRRIASLEQQAGGPLFDRLARGVRLTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  LH+    V ++L     EL       SG+LR+         L+ G L+ F   +P++
Sbjct: 62  GETLHQHARVVLNRLARAADELAGIHGGYSGRLRVGAFATANVALVPGALRAFRREFPEV 121

Query: 123 QIQLI 127
            +  +
Sbjct: 122 GLAPV 126


>gi|269963922|ref|ZP_06178234.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831409|gb|EEZ85556.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 347

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 6/172 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AAE+L ++ S+IS +I+ LE E+GIKLF R  R +TLTE
Sbjct: 50  SFQLSKLHTFEVAARHCSFSLAAEELSMTPSAISHRINKLEEELGIKLFVRSHRKITLTE 109

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +++   +   ++L    +E++   V  SG+L I +     Q+ L   +  F   +P 
Sbjct: 110 EGERIYLALNRTLNELNQEVMEVKCGDV--SGELTIYSRPSFAQSWLVPRIYSFKQQFPS 167

Query: 122 IQIQLILDNKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYA 169
           I++ ++  N++++      D AI    ++ + +    L++  +V +    YA
Sbjct: 168 IELNILTGNENVNFQGYGIDAAIYFDEQMPEKLWHQELMEESIVPVCTKEYA 219


>gi|221197187|ref|ZP_03570234.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203859|ref|ZP_03576877.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176025|gb|EEE08454.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183741|gb|EEE16141.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 306

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 8/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR I+ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVELRSFTRAADMHGLARPVVSRAIAELEARFGGRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + V  +L+  + E Q  + +P G LR+        N     +  F   +P ++I 
Sbjct: 65  IYERCAAVLDELDALEAEAQTQTREPDGLLRLVAHTTAALNQFVPLIAGFKAAHPKVRID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  I     + S + I R +  I     A P YL+    P +  +
Sbjct: 125 VTLTERPVDLVGEGYDIGIVAPYMLSSDTTIVRLIARIPFVIVATPAYLRAHGNPTTPAD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +     + +    F     V   +  P    +  NS +   +  + G GI ++P
Sbjct: 185 LADHPFVPLSPSLRRPALSFRVDGDV---LTLPLRFDISSNSPVFNREMVMHGFGIGIVP 241

Query: 246 DYIVKD---NPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +V+    +  LV++++  D++     +   Y        K+KAF ++
Sbjct: 242 RTLVETELASGALVQLLDDADLVDGCVELKLAYANRSLLPAKVKAFIDY 290


>gi|172064360|ref|YP_001812011.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996877|gb|ACB67795.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 327

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 118/279 (42%), Gaps = 8/279 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT 
Sbjct: 26  GYRFELMETFVRIVEAGSLSAAAAQLHTTQPTISRRLQALERSLGMRLLQRTTHAMRLTV 85

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      E+       + +L+ +  +P G LR+A     GQ      L  FL  YP 
Sbjct: 86  DGERCFTRAKELLTNWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVEPLARFLRDYPR 145

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ +L ++  D      DCAI++ +P    S++  +L  +     AAP  L     P 
Sbjct: 146 VSVEWLLQDEVRDFVGSGIDCAIQVGEPTD-PSVVAIRLSKVPRFVVAAPSVLNGADVPA 204

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSG 240
               L     +         +   + +    R I   PRI+    N Y ++    +LG G
Sbjct: 205 DPDALAALPWLALRTYYRTELTLTHTVTGDTRRIAMRPRITT--ANLY-ALRSAALLGVG 261

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
             +   +++ D+     LV +  D       VY  YP A
Sbjct: 262 ACVGSSWMLADHLARGELVHLAPDWYAAPLPVYITYPHA 300


>gi|86159624|ref|YP_466409.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776135|gb|ABC82972.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 297

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 18/300 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VA + SF  A + L ++ S++S+ +  LE  +G++LF R  R + LT
Sbjct: 1   MRSDLAALEAFLAVADNRSFRAAGQVLGVTSSAVSQAVHKLEERLGVQLFARTTRSVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L       + ++  T   L E   +P+G LR+  +        +G L  FL  +P
Sbjct: 61  EAGEHLRAGLRPAFAQMRETVDSLGELKGRPAGLLRLNVSSVAEAIFSEGVLAAFLARHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH------AYAAPHYL 174
            I++ + +D+   DI  +  D  I+L        +I + +V +++         A+P YL
Sbjct: 121 GIRLDVAVDDTGTDIVKEGFDAGIQL------GEVIAQDMVAVNVTREERQIVVASPRYL 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQ 233
                P   ++L KH  I  G  +      + W  T + R I     + +  N    +++
Sbjct: 175 AAHGVPRRPRDLHKHACI--GWRVYSRPAPYRWEFTSNGREIEVAIEARVDTNEMAVMVR 232

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA   +        +  LV ++++   P    +  YP   +   KL+A  +F+
Sbjct: 233 LALDGVGIAAGLERTWAPHLASGKLVSVLDEYCPPFSGFFLYYPRRTRVPAKLRALIDFL 292


>gi|78060070|ref|YP_366645.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964620|gb|ABB06001.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 297

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 130/292 (44%), Gaps = 18/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +   GS +  A  L ++  ++S +++ +E  +G+KL  R  R L LT +G    
Sbjct: 7   LEFFARLVTHGSLSALARDLGVTPPAVSARLNQIERRLGVKLLNRTTRRLALTNEGEVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S++  ++   +  +  S  +P G L++  T   G+  +   L  F   +P+++IQL 
Sbjct: 67  ATGSKLLEQVHELERTVSSSRNQPQGLLKVNATFGFGRRHIVPALSAFRDRHPEVEIQLE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ++++    D  IR  + +    ++ RKL        A+P YLK    P    +L 
Sbjct: 127 LTDRPMNLAELAYDVGIRFGE-LPDQRVVGRKLAANRRFVCASPAYLKANGVPKVPGDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGI 241
            H  I          E+     T     G+ R   ++V+  +S       +++ + G G+
Sbjct: 186 GHRCIVL-------RENDTAYGTWHFTKGK-RHELVKVHGVMSSNDGEATLRWAIDGHGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  ++  +   D+  L R++ D   P   +Y  YPE L  + K++ F  F+
Sbjct: 238 LVRSEWDAQPFIDSGALTRVLADWSLPPSDIYAVYPERLNLSAKVRVFIEFL 289


>gi|323965226|gb|EGB60684.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|327254588|gb|EGE66204.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Escherichia coli STEC_7v]
          Length = 299

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 141/315 (44%), Gaps = 37/315 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA   +F+ AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPIFIAVAEESNFSKAAARLGVTRSAVSQGIRRLEDAFGTMLVMRTTRSVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLY 119
           E G +LH+  S     +E    E+    V P G LRIA T  + +  L G L   F    
Sbjct: 61  EAGERLHKSLSLPLSGIEAAFEEMVSDHV-PRGHLRIAVT-SIAEEFLSGPLIASFAAAN 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHY 173
           P + + +++ +++ DI     D  +RL + I+   +       QR++V       A+P Y
Sbjct: 119 PAVTLDIVVTDEEFDIVTAGYDAGVRLGEVIEKDMIAVPLTGKQREMVV------ASPSY 172

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSY 228
           L     P+  +EL  H  I +       +  + W         D  I EP+I+    N  
Sbjct: 173 LAANSTPVHPRELVNHKCIGWRQ--SPEVAPYRWPFEENGRAFDLAI-EPQITT---NDL 226

Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKL 283
             +++  + G GI +      +   ++  LV +++D +   P F +YF  P+      KL
Sbjct: 227 RLMLRLALAGGGITIATQETFRPYIESGKLVSLLDDFLPQFPGFYLYF--PQRRNIAPKL 284

Query: 284 KAFRNFIFLKARDWK 298
           +A  + +    ++W+
Sbjct: 285 RALIDHV----KEWR 295


>gi|300696872|ref|YP_003747533.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299073596|emb|CBJ53116.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           CFBP2957]
          Length = 305

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 116/245 (47%), Gaps = 9/245 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LE ++G +L  R +  + +T  G 
Sbjct: 4   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAELEAQLGTRLLQRSSHRVCVTPVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + L+ G L EF   +P ++I
Sbjct: 64  AVYRHAREMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLVSGWLAEFAQAHPKLRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L + N  +D+     D AIR    P+ S  ++ R L         +P  +    EP S 
Sbjct: 124 ELEVSNPYVDLIEQRIDVAIRAATGPLPSRDVVARHLGASPRVLVGSPALISRMGEPDSP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSIMQYCVLGSG 240
             LD    +  G L  +C +   + A   R   PI  PR++    ++ +++ +  + G G
Sbjct: 184 AGLDALPCLGQGTLA-RCRDWVLFDARGHRHALPI-RPRMA---TDNLIALREAAIAGLG 238

Query: 241 IALLP 245
            A+LP
Sbjct: 239 FAVLP 243


>gi|295677035|ref|YP_003605559.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436878|gb|ADG16048.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 302

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 125/252 (49%), Gaps = 8/252 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA +L +S++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDVNSLTLLVDILDAGNLSEAARRLKMSRANVSYHLNQLERSVGLQLVRRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + + L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRTIRNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMSDWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P + +    P 
Sbjct: 121 VLDVMFENRVEDLMRDEIDIAVRVMSEPPQ--NLVARDMGPVRYVACASPEFARTHGMPA 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ +L    LIT   +I K +    +L      +  EP I      ++L + Q  + G G
Sbjct: 179 TLDDLRTAPLIT-AAVIGKQLRLAAYLREERHEVLLEPTIIS---ENFLFLRQAVLAGLG 234

Query: 241 IALLPDYIVKDN 252
           + L+PDY+V+D+
Sbjct: 235 VGLVPDYVVQDD 246


>gi|264680788|ref|YP_003280698.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262211304|gb|ACY35402.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 295

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 128/296 (43%), Gaps = 19/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V   GSF+ A  +L LS S++S+ I+ +E  +G++LF R A  + LT++G 
Sbjct: 4   FGEMTVFLHVIEEGSFSGAGRRLELSPSAVSKLIARMEARLGVRLFERIAGAIRLTQEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  V   +E  +  ++ +  + SG +RI T +   + L+   L   L  +P + +
Sbjct: 64  HFRIASQRVVQAMEQAEACVRVADAEISGTVRIHTALTTAKYLVAPRLHLLLDRHPRLHL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +L  +  D      D AI   +P +  +LI R L+       AAP YL+    P   +
Sbjct: 124 DFVLGTERGDFVRQGIDVAIHSGRPTE-QTLIGRPLMLRPWVIAAAPQYLQRFGHPEQPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L +H  + F          F+    L T+D P      S +  N    +    +LG G+
Sbjct: 183 DLLQHRCLNFTIRTQWNRWTFHEEGGLKTIDIP------SHIGANQGELLRSLALLGHGV 236

Query: 242 ALLPDYIVKDN-------PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             L  + +  +       P L +  E      F  Y  YP       +++A  +F+
Sbjct: 237 VRLAHFHIAADLERGTLVPLLQQFQERSEDDRF--YLLYPRGRSLAPRVRAVLDFL 290


>gi|228908175|ref|ZP_04072023.1| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 200]
 gi|228851593|gb|EEM96399.1| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 200]
          Length = 300

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 144/314 (45%), Gaps = 41/314 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKQLHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHCKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  ++LI         +LI    +  N+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYSLILLPKNFFLTELITSHCQKLNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTV--------YFC-----YP 274
           +Q    G GI +LP    D++   N   +RI     TP   +        Y C     + 
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIRIENP--TPIIEIGLIYRKDKYMCAATREFI 288

Query: 275 EALKNTGKLKAFRN 288
           E LK+T  +++F+N
Sbjct: 289 EQLKST--VRSFQN 300


>gi|123444207|ref|YP_001008390.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122091168|emb|CAL14051.1| Putative transcriptional regulator of the LysR family [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 317

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 136/300 (45%), Gaps = 34/300 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  +  +GS + AA +L  SQ +ISR++  LE  +G+KL  R    + LT+ G + +
Sbjct: 15  MQTFIRIIEAGSLSAAAARLGTSQPTISRRLQTLERLLGLKLLQRTTHIMKLTDDGERCY 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++     T + +L+ ++ +P G LR+      GQ+ L   LK+FL  YP + ++ +
Sbjct: 75  SHAKQLIESWNTMEDDLRGATDEPRGLLRVLVPHAFGQDQLIKPLKDFLHQYPKMSVEWM 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++  D   +  DCAI++   +   S++   L  +     AAP  L N       Q L 
Sbjct: 135 LNDRRPDFIAEGIDCAIQVGS-VTDPSVVAILLAEVPRIVVAAPELLDN-------QPLP 186

Query: 188 KHNLITFGDLIPKCMEDFNWLA----------TVDRPIGE-PRISC---LQVNSYLSIMQ 233
            H         P+ ++DF+WLA             +  GE  R S    L  +S  ++  
Sbjct: 187 TH---------PEQLQDFHWLALNTFYRNEVVLSHKTNGEMHRFSIQPQLSTDSLYALRN 237

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G G  +   ++V D+     LV +  D       +Y  YP A     +L+AF + +
Sbjct: 238 AALTGLGAGIASTWVVNDDIKQGRLVHLTPDWHGLPLPIYLVYPHASYYPARLRAFLDIM 297


>gi|21229518|ref|NP_635435.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766390|ref|YP_241152.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188989440|ref|YP_001901450.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21110982|gb|AAM39359.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571722|gb|AAY47132.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167731200|emb|CAP49372.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 300

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 126/292 (43%), Gaps = 15/292 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + ++  V RSGSF  AA +L  + +S+SR++  LE ++  +L  R  R LTLT+ 
Sbjct: 5   IDLNDIALYVQVVRSGSFAEAARRLGTAPNSVSRRVQQLEAQLDTRLMQRSTRKLTLTDA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    +    L      L     + +G +R+A   D         + +FL  +P +
Sbjct: 65  GQAFYERCGDAVDGLTDAGQSLVAGGEEVAGLVRVAAPADFLDFFRVEWVADFLAAHPRV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPL 181
           +++ +L +   D+  +  D A R    +  SS + R ++  +     A+P YL+    PL
Sbjct: 125 RLEFLLSDARADLIAERIDVAFRA-GILADSSYVGRPILADNRDVLVASPGYLQARGRPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
            + EL +H+ +     IP      +W  T+  P G        +    N+  ++    V 
Sbjct: 184 RLDELPQHDCLG----IPHPSGHVSW--TLVGPSGLAETVQVPTRFAANTARALRLAAVA 237

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G GIALLP  +   +     LV ++ D       V+  YP        + AF
Sbjct: 238 GLGIALLPQALTWPDVAEGRLVTVLPDFQRNGQGVHALYPSRRHQPRAVTAF 289


>gi|330940074|gb|EGH43260.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 256

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 2/209 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A   SF+ AAE+L +  S++SR I  LE ++GI LF R  R L LTE G    
Sbjct: 49  LTAFVESANGNSFSKAAERLGIKASTVSRYIKDLEQDLGIALFNRSTRKLALTEGGQTFL 108

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V  +L   +      +  P G+L+++      ++ +   + EF+  YPDI + L 
Sbjct: 109 YHAQKVLFELSEAKAATSALNQNPRGRLKVSLPPAFARHHILPLVGEFIERYPDITLDLC 168

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+   +D+     D AIR+ + + +S+L  RKL  +      +P +     +P    +L 
Sbjct: 169 LEESQVDLIATGIDLAIRIGR-LANSNLKARKLAEVKTFLCVSPEFAARYPQPDCPDQLP 227

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG 216
             +++  G   P+ +   N    V  P+G
Sbjct: 228 V-DMMIIGRQCPEALIWANDNEQVSLPVG 255


>gi|224826217|ref|ZP_03699319.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224601318|gb|EEG07499.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 296

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 127/291 (43%), Gaps = 25/291 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR GSF+ AAE LH++  +ISRQ+  LE  +G  LF R  R + L   G  
Sbjct: 9   NALRAFESAARLGSFSAAAEALHVTHGAISRQVQQLEDWLGFALFERRGRRVMLNAAGQA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   +  +      L  ++ +   +L+I  T  L  + L   L  F L YP ++++
Sbjct: 69  YLPALQTAFDGIAGATEAL--TARRQGRRLQINVTPTLAMHWLLPRLTRFQLRYPGVELR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC------RE 179
           L     D  I+   AD  I +R+    S    R  V    HA+ A   L  C      R 
Sbjct: 127 LA--TSDAAINNQNADFDIAIRR----SQEHWRGFVA---HAFLAERELPVCSPALLARH 177

Query: 180 PL-SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P+ S+ +L +H L+   +  P   E   WLA    P  +P  +    + Y   +Q  + G
Sbjct: 178 PIASVADLAQHTLL-HSETRPVAWE--RWLAAAGAPALQP-AATQHFDHYYLALQAAIDG 233

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVY-FCY--PEALKNTGKLKAF 286
            G+ L P  ++++     +++  +  P   V  +C+  P++L     + AF
Sbjct: 234 LGVTLGPLPVIEEELASGKLVAPLPGPEVVVKGYCWVVPQSLVGDELVSAF 284


>gi|319942714|ref|ZP_08017020.1| hypothetical protein HMPREF9464_02239 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803724|gb|EFW00665.1| hypothetical protein HMPREF9464_02239 [Sutterella wadsworthensis
           3_1_45B]
          Length = 328

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 1/187 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D    R F V ARSG+ T AA+ L    SSISR ISGLE  +G++L     R L LT+ G
Sbjct: 6   DLQAWRSFIVFARSGTLTAAAKALETEPSSISRAISGLERTLGVELIRHGVRPLVLTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H+    +    ++    L++ +    GK+R+++        L   L+ F + +P I 
Sbjct: 66  RMAHKRMETILRAHDSLMDALKDDNRTLEGKIRLSSAPGFAARHLTTLLQRFQIEHPGIT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++   K+ D+     + A     P   + +   +   +++ A A+P Y+  C  P+  
Sbjct: 126 VEILAGLKEADVQKGLCEVATLTGIPTLPNLVYMSRGRNVYV-AAASPDYIARCGMPVRP 184

Query: 184 QELDKHN 190
            +L +H+
Sbjct: 185 ADLRRHS 191


>gi|270261830|ref|ZP_06190102.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043706|gb|EFA16798.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 314

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 20/289 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+    +  SGS + AA Q++ SQ +ISR++  LE  +G+KL  R    + LT+ G + +
Sbjct: 17  LQTLVRIVDSGSLSAAAAQMNTSQPTISRRLQVLEQLLGVKLIQRTTHAMKLTDDGERCY 76

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++    +  + EL+    +P G LR+      GQ+ L G L ++L  Y    ++  
Sbjct: 77  QHARKLIEHWQIMEDELRGVRDEPVGVLRVRAPHAFGQDQLIGPLGDYLQRYRQTSVEWT 136

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++   D   +  DCAI +   +   S++   L  +     AAP  L        I +L 
Sbjct: 137 LNDHSPDFIPEGVDCAIHVGA-VTDPSVVAVLLAQVPRIVVAAPELLARHTPLAQIGDLA 195

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYCVLGSG 240
           +   +             N +       GE       PR+S    +S  ++ +  + G G
Sbjct: 196 QLPWLALNSFY------RNEVTLTHTASGEDYRFDIVPRLST---DSLYAVRKAALNGVG 246

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +A+L  ++VK +     L  +M D       +Y  YP A     +L+ F
Sbjct: 247 VAMLSSWVVKQDLEQGLLTPLMPDWHAAPLPIYLLYPYASYYPARLRKF 295


>gi|295690343|ref|YP_003594036.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295432246|gb|ADG11418.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 303

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 138/298 (46%), Gaps = 21/298 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA++GS+  AAE++ L++S + + ++ LE  +G +LF R +R L LT++G      
Sbjct: 12  VFVAVAQTGSYAGAAERMGLTRSGVGKAVARLEHRMGRRLFDRTSRALKLTDEGRAF--- 68

Query: 70  TSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             EV   LE   +    S  +P    G+LR+++    G  LL  +L + +  +P +++ L
Sbjct: 69  VDEVVPLLERLHVAAAPS--RPDEIRGRLRVSSDSAFGAFLLAPSLPQLVARHPRLKVDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE- 185
           ++ ++  ++  D  D A+R  +P +   L+++ ++   +   A+  YL     P S Q  
Sbjct: 127 VIRDRVDNLLADGFDVAVRFGEP-EHPGLVKQPVLESRLITCASRIYLSGRDAPTSPQAL 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SC-LQVNSYLSIMQYCVLGSGI 241
           L  H  +   D   +    +++L    R  G        C + +N   S++     G G+
Sbjct: 186 LGGHVCVNMIDDASRRPHGWDFL----RADGAEHTIAPDCNVTINDASSLLSAARAGFGV 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             L D++V+    +  LV I+ +        Y   P     +  L AF  F+   ARD
Sbjct: 242 VRLLDFMVEAELRSGTLVEILPEWNERRRRAYVYAPAQSHASPSLIAFTEFVRSMARD 299


>gi|237509152|ref|ZP_04521867.1| gp58 [Burkholderia pseudomallei MSHR346]
 gi|235001357|gb|EEP50781.1| gp58 [Burkholderia pseudomallei MSHR346]
          Length = 297

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 129/288 (44%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L  F   AR G+FT AAE+L+++Q ++S+Q+  LET +G  LF R A+ L LT  G +  
Sbjct: 12  LVFFDAAARHGNFTRAAEELNVTQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQQYA 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            RV + +   +E T + ++E +      L IA         L   + EF   +P++ +++
Sbjct: 72  DRVHAILADCVEATALVMKEQTPH---SLTIACASGTATLFLADRIAEFSAEHPEVSVRI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++     +++    D  +   + +    +    ++   +HAY AP +L   R P   Q+L
Sbjct: 129 LVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIIAEDVHAYCAPTFLAGRRVP--PQDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L+   +   + M   +W       IG      +  NSY  ++Q  + G G  L   
Sbjct: 187 MEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPLLLQLALHGHGAILGWK 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +++    ++  LV   +   +        +P   ++T  +  FR ++ 
Sbjct: 247 HMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLL 294


>gi|221209668|ref|ZP_03582649.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221170356|gb|EEE02822.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 299

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 115/283 (40%), Gaps = 6/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T+ 
Sbjct: 5   LNWERYRTFLAVLTEGSLSAAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTDA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              L      +       +           G +RI+ +  +   +L   L +    +P +
Sbjct: 65  ALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPLLAQLRREHPGL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+  ++  D+    AD A+R+  P Q  +L+ R++  + +  YA   YL     P +
Sbjct: 125 VIELVPTDRIQDVLNREADIAVRMASPSQ-DALVARRIGELEVALYARDDYLTRYGAPST 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L  H LI F  + P        L +  R         L+ +S L+ +     G GI 
Sbjct: 184 LDALAHHALIGFDTVTPFVRSAGRGLPSWTR-----EAFALRTDSNLAQLAMIRAGYGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
                + + +  LVR++ D        +    E L+ + + +A
Sbjct: 239 FCQSRLAQRDSRLVRVLPDGPAVKLETWVVMHEDLRASPRCRA 281


>gi|218681915|ref|ZP_03529592.1| LysR family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 264

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 115/254 (45%), Gaps = 15/254 (5%)

Query: 45  VGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLG 104
           +G +L  R  R L LT++G   +    ++   ++  +  +   S  P   LR++     G
Sbjct: 1   LGARLLNRTTRTLNLTDEGRVFYERGLQILASVDAAEASVAGRSGTPRSVLRLSVPDAFG 60

Query: 105 QNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH 164
           + ++   L+E+L  + DIQ+++   ++  D+  +  D AIR+      + L  R + T  
Sbjct: 61  RLVVLPLLEEYLRAWLDIQVEISFTDRFADVVEEGFDLAIRIGPTASDARLASRVIATYR 120

Query: 165 MHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPR 219
               A+P YL   REP  I +   H+ + F     +    F     +W+    R      
Sbjct: 121 TLLCASPSYLAEHREPRDIDDFSAHDCLIFISRNQRHAWRFRGKGNSWITAQGR------ 174

Query: 220 ISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
            S L+++S  +I    + G GIALLPD++V D+     L +++ D+ T    +   YP+ 
Sbjct: 175 -SRLRLDSAEAIRHAALAGLGIALLPDFLVADDLAAGRLRQVLPDLETDDTKIVTLYPDK 233

Query: 277 LKNTGKLKAFRNFI 290
                +++ F + +
Sbjct: 234 RPLEPRVRRFIDLV 247


>gi|167827841|ref|ZP_02459312.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
          Length = 290

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 25/294 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 8   NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFALFMRHARGLTLTVEGEQ 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +    + +   +  F   +PD+ +Q
Sbjct: 68  LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MHWVLPRIMRFQREHPDLHVQ 122

Query: 126 LILDNK-DIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    + D+D   +  D AI         + +  L   +L  +      AP  L+    P
Sbjct: 123 MTTTWRHDVDFQSEPFDAAIVYGMSPGPDVAAVPLFDERLTPV-----CAPDLLEG--RP 175

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
           L+ +++L  H L+  T      +   D+   A VD P   P    L + +  +   + V 
Sbjct: 176 LARVEDLACHTLLHPTRDHRDWRRWLDYAGAAGVD-PDRGPSFDSLDLATSAATQGFGVA 234

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LG       D+  +    L   ++ V       YF YPE++    K++ F  ++
Sbjct: 235 LGDLTLSEEDFAAR---RLAMPLDIVQRTGARYYFVYPESVAQQQKIQRFSGWL 285


>gi|148547499|ref|YP_001267601.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511557|gb|ABQ78417.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 310

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 122/293 (41%), Gaps = 18/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++E G +  
Sbjct: 7   MRTFTRVVECGSFAAAANALDISAAQVSRIVAELENQLQTRLLHRTTRRLRMSEAGERFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E    E + + + P G LR+     +G  LL   +  +  LYP++ I+L 
Sbjct: 67  ERARQIMLLTEEAVGEARGAHLTPRGHLRLHCPHGMGL-LLMPLVAGYNTLYPEVVIELT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D   +  D  I +   +  S LI   L  I     AAP YL     P   ++L 
Sbjct: 126 LSQRNPDPLAEGHDVVITVDGALPDSQLIAVPLGNIFSIPCAAPGYLDTHGVPERPEDLH 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +      P    D+ +   VD+ +  P  S    N   +++    LG GI LLP Y
Sbjct: 186 GHRCLRMA--YPMYEGDWVFPQGVDQCVIAPNDS-FSTNVADAMLVASELGMGIGLLPFY 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 +   L R++         +Y  YP            R+++  K R W
Sbjct: 243 TASEAIEQGRLRRLLAPYRLRESALYAMYPS-----------RHYLDAKVRTW 284


>gi|312796334|ref|YP_004029256.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312168109|emb|CBW75112.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 304

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 147/311 (47%), Gaps = 25/311 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+    V  +GS T  A+QL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 5   MKITLDELQALVSVVDTGSITAGAQQLGLTISATSRTLGRLEEKLKTTLVRRTTRRLELT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E+ Q  +     +PSG+LR+        +++   ++ +   YP
Sbjct: 65  EEGRAFLSDARAIIASVESAQERMAAYRERPSGRLRVDAATPFMLHVIVPLVQGYRERYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+   ++ S+L ++ +    +   A+P YL+    P
Sbjct: 125 HVELELNSNEGIIDLLERRTDVAIRI-GALKDSTLHRKAVGRSRLRILASPAYLEAHGHP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RIS-CLQVNSYLSIMQYCVLG 238
             +++L +H L+ F    P+ +  +  L     P  EP RI+  +  +S  ++ Q  + G
Sbjct: 184 KRVEDLTRHALLGFNQ--PEALNVWPILG----PDQEPYRITPTIWSSSGETLRQLALAG 237

Query: 239 SGIALLPDYI-VKDNPN------LVRIMEDVITPSFTVYFCYPEALKNT---GKLKAFRN 288
           +G+  L D++ V+D  +        R  +DV  P   VY+      +NT    ++ +F +
Sbjct: 238 AGVVCLSDFMTVRDRRDGMLVELFPRQTQDVRQPINAVYY------RNTAISARIASFVD 291

Query: 289 FIFLKARDWKF 299
           ++    RD +F
Sbjct: 292 YLVDAVRDTEF 302


>gi|262281520|ref|ZP_06059300.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262257108|gb|EEY75846.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 286

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 114/249 (45%), Gaps = 11/249 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  ++   + R+G  + +A+ L +S S++ R+   LE  +   LF R + G TLT  
Sbjct: 1   MNWDDTKILLAIGRTGGLSRSAKLLGISVSTVHRRAVELEKSLNAILFSRDSDGYTLTHV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKL-RIATTIDLGQNLLQGNLKEFLLLYPD 121
           G     +      K E   I ++  + +    L RIA    +GQ LLQ  L    L +PD
Sbjct: 61  GKHFFALAE----KAEEHLIAMERYNDQGQQSLFRIALPELIGQQLLQSKLTVLQLKHPD 116

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++++     +D S   AD  +RL +P +S   I R+L  +    Y +  YL +  E  
Sbjct: 117 LQLEILTSVVPVDFSRREADIILRLVRP-ESGRYIIRRLGQLEYGLYCSHDYLASFTEHA 175

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H +I +   +      + +LA   R + +     L  ++  S ++  + G GI
Sbjct: 176 ETADLLNHRIIGWDRSL-----QYTFLAQWMRELTQDAAPALSFDNMHSQLRAVIEGQGI 230

Query: 242 ALLPDYIVK 250
             LP ++ K
Sbjct: 231 TALPCFVAK 239


>gi|161520359|ref|YP_001583786.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353464|ref|YP_001949091.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344409|gb|ABX17494.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337486|dbj|BAG46555.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 299

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 115/283 (40%), Gaps = 6/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T+ 
Sbjct: 5   LNWERYRTFLAVLTEGSLSAAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTDA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              L      +       +           G +RI+ +  +   +L   L +    +P +
Sbjct: 65  ALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPLLAQLRREHPGL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+  ++  D+    AD A+R+  P Q  +L+ R++  + +  YA   YL     P +
Sbjct: 125 VIELVPTDRIQDVLNREADIAVRMASPSQ-DALVARRIGELEVALYARDDYLARYGAPST 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L  H LI F  + P        L +  R         L+ +S L+ +     G GI 
Sbjct: 184 LDALAHHALIGFDTVTPFVRSAGRGLPSWTR-----EAFALRTDSNLAQLAMIRAGYGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
                + + +  LVR++ D        +    E L+ + + +A
Sbjct: 239 FCQSRLAQRDSRLVRVLPDGPAVKLETWVVMHEDLRASPRCRA 281


>gi|218516020|ref|ZP_03512860.1| transcriptional regulator protein (activator), LysR family
           [Rhizobium etli 8C-3]
          Length = 278

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 24/247 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L ++Q+++S+Q+ GLE  +G+ LF R  RGL +T +G  
Sbjct: 9   NGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKGLEKRLGVALFQRLPRGLKITAEGEA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +  + ++ TT   ++   V+    L +  T  +G   L   L +F   +P I I+
Sbjct: 69  LLPTVTASFDQMATTLDRIEAGEVRELLFLGVIGTFAVG--WLLPRLADFQRRHPFIDIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +N  +D + +  D AIR    +               H   A H  +     L I E
Sbjct: 127 VSTNNNRVDPAAEGLDFAIRFGSGL--------------WHGTEAQHLFEAPLSALCIPE 172

Query: 186 LDKHNLITFGDLIPKCM-------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           L   +L T  DL    +       E   W A    P      + +  +S +++M+  + G
Sbjct: 173 L-ADDLRTPADLAGATLLRSYRADEWSTWFAAAGVPPAAQVNAGIVFDSSVAMMEAALQG 231

Query: 239 SGIALLP 245
            G+AL P
Sbjct: 232 LGVALAP 238


>gi|254252346|ref|ZP_04945664.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124894955|gb|EAY68835.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 424

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 130/301 (43%), Gaps = 19/301 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF      GS   A  +L  S +++SR I+ LE   G  L YR  R + L+E G +
Sbjct: 121 DAMKVFVATLDEGSLAGAGRRLGRSPAAVSRAIAFLEAHTGTALLYRTTRTIRLSEAGER 180

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   LE   + + +    P G L I   +  G++LL+  L EF+  +P + I+
Sbjct: 181 YAAACRRILADLEEADMLVADERSAPRGLLTITAPVAAGEDLLRALLDEFIDRHPAVSIR 240

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ + +  +  D A+R+   +  S+L+   +  +     A+P YL       +  +
Sbjct: 241 LQLLDRPVSLIDEGIDVALRIAH-LADSTLVAVPVGAVRRVVVASPGYLAAHPPIETPAD 299

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQ----VNSYLSIMQYCVLG 238
           L +H +I+        M  F   +    P G+   P++        VN+  + +   V G
Sbjct: 300 LAQHRVIS--------MTHFGLDSWSFPPSGQSALPQVVQFAPRFIVNTIRAAIASAVAG 351

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+  L  Y V D   +  L  ++ D       V+   P    +  K++AF +F   + R
Sbjct: 352 HGVTRLFSYHVADAVKDGALRIVLRDSEHAPLPVHLLTPYGRLSVPKVRAFVDFAAPRLR 411

Query: 296 D 296
           +
Sbjct: 412 E 412


>gi|300936017|ref|ZP_07150965.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300458809|gb|EFK22302.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
          Length = 298

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 124/261 (47%), Gaps = 9/261 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+    F ++A  GS++ AA +  +S+S +SR+++ LE  +G++L  R  R L LT  
Sbjct: 2   IDWNDYYYFALIADEGSYSQAALRAGVSKSVLSRRMAALEERLGVRLIQRTTRRLALTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  + E  +  +  +   P G LR++  + + +      + EF+  +P  
Sbjct: 62  GEQFAVECRALVAQGERARAVVMAAQESPQGMLRVSAPVFMAETWFGEFVSEFIARWPLA 121

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++Q++  N+ +D+  +  D A +     +  S+L  +KL T      A+  +L   R P 
Sbjct: 122 KVQMLAINRPVDMVAEGIDIALVTASGALADSTLHYKKLHTQADILVASSQWL--ARHP- 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +D  N +  G L         W L   ++ I     + LQ N+   ++Q  + G+G
Sbjct: 179 QVKAIDDLNRVD-GILRLTNNGGSQWQLINGEQEITLQPEARLQTNNIRVMLQAVLGGNG 237

Query: 241 IALLPDYIVKD---NPNLVRI 258
           +ALLP +  K    N  LVR+
Sbjct: 238 VALLPQFACKQGLANGELVRL 258


>gi|215481981|ref|YP_002324163.1| Putative transcriptional regulator [Acinetobacter baumannii
           AB307-0294]
 gi|213988372|gb|ACJ58671.1| Putative transcriptional regulator [Acinetobacter baumannii
           AB307-0294]
          Length = 299

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 111/247 (44%), Gaps = 5/247 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F VVA+  SFT AA +L  SQS+IS+ +  LE  +GIKL  R  R +  T
Sbjct: 1   MKENLNDLHTFIVVAQERSFTRAAAKLRTSQSAISQTLRNLEDRIGIKLLSRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L  +      ++E    +L      P+G LRI+      Q +L   +++ +  +P
Sbjct: 61  EAGEYLLSLIQPAIEEIEHGMNQLSALKNDPAGTLRISADEYGIQTVLWPAVEKVIQQFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
            I +++  D   +DI     D  +R R  + S  +I  ++   I M   A   YL+    
Sbjct: 121 KISVEITSDYGLVDIVDGRFDAGLR-RGGLVSKDMIALQISDPIQMLTVATKEYLERYGH 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLG 238
           P   + L +H  I     +P   E + W  T         ++   V + LS ++Q    G
Sbjct: 180 PKQPKNLVEHQCINL--RLPTHGELYRWQFTKGNKTQSVNVNAKIVFTTLSPVLQAVRSG 237

Query: 239 SGIALLP 245
            GIA LP
Sbjct: 238 VGIAYLP 244


>gi|297199488|ref|ZP_06916885.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
 gi|197712967|gb|EDY57001.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
          Length = 303

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 74/326 (22%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D  ++ +F  VAR GS T  A  L+ + S++S+Q+S LE E G  L  RHARG+TLT
Sbjct: 1   MMLDVRRILLFTEVARRGSVTATARALNYTPSAVSQQVSRLEAEAGQPLLERHARGVTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L      +  +L   + EL + +   +G LR+ T   +G +LL   +  F   +P
Sbjct: 61  DAGRALAERGERIERELTAAENELADFAGLRAGTLRVGTFPTVGASLLPRAVIAFREAHP 120

Query: 121 DIQIQL----------ILDNKDIDISM--DYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168
           D+++ +          +L+N++I++S+  DY              + I R+ + +   A 
Sbjct: 121 DVRLTVRSARIAGLWAMLENREIEMSLMWDY------------DWNRIDREDIAVTTLAD 168

Query: 169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN---WLATVD-RPIG-------- 216
             P  L     PL+             D     + DF    W+   D  P+         
Sbjct: 169 DPPALLVAQGHPLA-------------DRPSAALADFANDPWITRADHHPVAEALARSCH 215

Query: 217 ----EPRISCLQVNSYLSIMQYCVLGSGIALLPDY----------IVKDNPN-------L 255
               EP+I+  + + Y         G G+AL P            I+K  P        L
Sbjct: 216 AAGFEPQIA-YEAHDYQEAQAMVAAGIGVALAPTLALEGIRAGVSILKLQPAGPVRRILL 274

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTG 281
           VR+ +  +TP+   +  +   L+N+ 
Sbjct: 275 VRMSDHALTPAAQAFAVF---LRNSA 297


>gi|171317980|ref|ZP_02907153.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171096823|gb|EDT41698.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 327

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 120/282 (42%), Gaps = 14/282 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT 
Sbjct: 26  GYRFELMETFVRIVEAGSLSAAAAQLHTTQPTISRRLQALERSLGMRLLQRTTHAMRLTV 85

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      E+       + +L+ +  +P G LR+A     GQ      L  FL  YP 
Sbjct: 86  DGERCFARAKELLTNWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVEPLTRFLRDYPR 145

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ +L ++  D      DCAI++ +P    S++  +L  +     AAP  L     P 
Sbjct: 146 VSVEWLLQDEVRDFVGSGIDCAIQVGEPTD-PSVVAIRLSKVPRFVVAAPSVLNGADVP- 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYCVL 237
              + D    + +  L      +     TV     R    PRI+    N Y ++    +L
Sbjct: 204 --ADPDALAALPWLALRTYYRTELTLTHTVTGDTRRIAMRPRITT--ANLY-ALRSAALL 258

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
           G G  +   +++ D+     LV +  D       VY  YP A
Sbjct: 259 GVGACVGSSWMLADHLARGELVHLAPDWYAAPLPVYMTYPHA 300


>gi|56698072|ref|YP_168443.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56679809|gb|AAV96475.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 292

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 10/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+      SG+L + T+++    L+   L  F   +P + 
Sbjct: 63  LDLLRVAQATDDQFSQLVGRLKGVGDDVSGEL-VVTSLEALAPLVVPVLGAFQRKHPGLI 121

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +   +   +    A  AIR  R P Q  +++Q   +   +  YA+  Y+        
Sbjct: 122 VRYLTGARLFRLEYGEAHVAIRAGRVPDQPDNVVQ-PFIDQEVGLYASRGYVARRGMLKG 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L  H  +   D        F+ WL    + +    IS    ++Y S       G+GI
Sbjct: 181 DADLKNHEFVGSDD--ENSRAPFHIWL---RQNVPAEAISFRCSDTY-SAGHAVRAGAGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +  +    +P+L+ +   +   +  ++      L  T K++ F  F+   AR+W
Sbjct: 235 GFVSRWAAARDPDLIEMHPALEEWAGKLWLVTHVDLHRTPKVQTFLKFLKQAAREW 290


>gi|226197670|ref|ZP_03793245.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225930279|gb|EEH26291.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 284

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 25/294 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 2   NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFALFMRHARGLTLTVEGEQ 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +    + +   +  F   +PD+ +Q
Sbjct: 62  LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MHWVLPRIMRFQREHPDLHVQ 116

Query: 126 LILDNK-DIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    + D+D   +  D AI         + +  L   +L  +      AP  L+    P
Sbjct: 117 MTTTWRHDVDFQSEPFDAAIVYGMSPGPDVAAVPLFDERLTPV-----CAPDLLEG--RP 169

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
           L+ +++L  H L+  T      +   D+   A VD P   P    L + +  +   + V 
Sbjct: 170 LARVEDLACHTLLHPTRDHRDWRRWLDYAGAAGVD-PDRGPSFDSLDLATSAATQGFGVA 228

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LG       D+  +    L   ++ V       YF YPE++    K++ F  ++
Sbjct: 229 LGDLTLSEEDFAAR---RLAMPLDIVQRTGARYYFVYPESVAQQQKIQRFSGWL 279


>gi|167585517|ref|ZP_02377905.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 310

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 6/187 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVATRLFERSTRQLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQ       GK+R+++T D G+N L   L  F   +PD+   L 
Sbjct: 67  NCCRQALQALDDADAMLQAGRNVVGGKVRLSSTSDFGRNQLLDWLDAFTAQHPDVTFSLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +++  D  D AIR   P    +LI R+L        A+P ++     P      D
Sbjct: 127 AADSSLNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCASPAFVARHGAP-----RD 180

Query: 188 KHNLITF 194
            H+L  F
Sbjct: 181 PHDLARF 187


>gi|56552232|ref|YP_163071.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|5354200|gb|AAD42409.1|AF157493_17 transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543806|gb|AAV89960.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 303

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 1/191 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA  GSF  AAE + LS+ ++S+ +S LE  +G  LF R++R ++LT+ G
Sbjct: 5   DFEAWAIFAKVAELGSFARAAEAIQLSKPTVSKAVSRLEQSLGSALFNRNSRHISLTDLG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +++  + E  + E +    +PSG ++IA     G   L   L +FL  YP+I 
Sbjct: 65  RSLLGHANKIIAEAEMAETEARGGIQRPSGLIKIAAPTTFGLWHLSPILPDFLAQYPEID 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +   +  +D+  +  D A+R+   +  S+L  R+L  + +   A   YL     P   
Sbjct: 125 ISIDFSDALVDLVGEGYDIALRIAS-LADSALRARRLCPVRLLLVATSDYLDRIGRPQHP 183

Query: 184 QELDKHNLITF 194
           + L+K     +
Sbjct: 184 KALEKQKSFVY 194


>gi|27367359|ref|NP_762886.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37677113|ref|NP_937509.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|320159204|ref|YP_004191582.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
 gi|27358928|gb|AAO07876.1|AE016811_117 Transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37201658|dbj|BAC97479.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319934516|gb|ADV89379.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
          Length = 315

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 92/189 (48%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L L+ +++S  I  LE +VG  LF R  R L LT  G+ 
Sbjct: 5   NDLNIFVETARQGSFSQAANSLDLTPAAVSAAIKRLEEQVGFPLFVRSTRSLRLTSDGAL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             + T+     L+    E+  +  + +G+L I    D G+N+L   + EF+  +P + I+
Sbjct: 65  FLQKTTAALSLLQDGLDEINSARGELAGQLYITAPSDFGRNMLLEWIDEFIEQHPRVTIK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+     D AIR  +P  S+ +      +      A+P YL +    L   +
Sbjct: 125 LDLSDSLTDMYSKPVDLAIRYGEPADSNLVAIPLCRSNERILCASPDYLASQPPILHPSD 184

Query: 186 LDKHNLITF 194
           L +HN + +
Sbjct: 185 LLQHNCLCY 193


>gi|323492251|ref|ZP_08097409.1| DNA-binding transcriptional regulator DsdC [Vibrio brasiliensis LMG
           20546]
 gi|323313564|gb|EGA66670.1| DNA-binding transcriptional regulator DsdC [Vibrio brasiliensis LMG
           20546]
          Length = 316

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 6/184 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F VVAR  SF+ AAE+L L+ S+IS +I+ LE E+G++LF R  R +TLTE
Sbjct: 16  SFQLAKLHTFEVVARHCSFSLAAEELSLTPSAISHRINKLEHEIGVRLFTRTHRKITLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG ++++      + L     +++   +  SG L + T     Q  L   +  F   YP 
Sbjct: 76  QGERIYQSLQRTLNDLNQEIHDVKSGDI--SGPLTVYTRPSFAQCWLVPRIHLFKEHYPS 133

Query: 122 IQIQLILDNKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           I ++L+  N+ I+      D AI     + + +    ++   ++ +    YA  H L   
Sbjct: 134 IDLKLLTGNEKINFQGYGIDVAIYFDDHMPEKLFCKEILSETIIPVCTREYADKHQLNAA 193

Query: 178 REPL 181
           +E L
Sbjct: 194 KENL 197


>gi|331651177|ref|ZP_08352202.1| transcriptional regulator, LysR family [Escherichia coli M718]
 gi|331050918|gb|EGI22970.1| transcriptional regulator, LysR family [Escherichia coli M718]
          Length = 299

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 143/318 (44%), Gaps = 43/318 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA   +F+ AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPIFIAVAEESNFSKAAARLGVTRSAVSQGIRRLEDAFGTMLVMRTTRSVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLY 119
           E G +LH+  S     +ET   E+    V P G LRIA    + +  L G L   F    
Sbjct: 61  EAGERLHKSLSLPLSGIETAFEEMVSDHV-PRGLLRIAVR-SIAEEFLSGPLIASFAAAN 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHY 173
           P + + +++ +++ DI     D  +RL + I+   +       QR++V       A+P Y
Sbjct: 119 PAVTLDIVVTDEEFDIVAAGYDAGVRLGEVIEKDMIAVPLTGRQREMVV------ASPSY 172

Query: 174 LKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQV 225
           L     P+  +EL  H  I +    D+ P     + W         D  I EP+I+    
Sbjct: 173 LAANSTPVHPRELVNHKCIGWRQSPDVAP-----YRWPFEENGRVFDLAI-EPQITT--- 223

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNT 280
           N    +++  + G GI +      +   ++  LV +++D +   P F +YF  P+     
Sbjct: 224 NDLRLMLRLALAGGGITIATQETFRPYIESGKLVSLLDDFLPQFPGFYLYF--PQRRNIA 281

Query: 281 GKLKAFRNFIFLKARDWK 298
            KL+A  + +    ++W+
Sbjct: 282 PKLRALIDHV----KEWR 295


>gi|323525855|ref|YP_004228008.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382857|gb|ADX54948.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 294

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 130/286 (45%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS T AAE+  +S + + + I  LE+ +G +L  R  R  +LTE G + +
Sbjct: 7   MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLESRLGTRLLTRTTRRQSLTEIGRQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L++   +  G  +    + ++L  +P++ ++L 
Sbjct: 67  EQCRRILADVKDAESLAEAMAAAPRGVLKVTVPLTYGVEVFSPAMTDYLSAWPEVTLELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+  D+  +  D A+R+   +  SS + R L    M A A+P YL     P +  +L 
Sbjct: 127 LSNRVTDLVEEGFDAAVRIGH-LPDSSFVARPLKPYRMRACASPAYLARAGIPRTPADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F     + +      +  + P    R    + N+  ++    + G G+ L P+ 
Sbjct: 186 HHECLGFLHWGREGIWRLGNESAAENP---SRAGRFRANNGQALKVAALRGFGLVLQPEA 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++     +  LV ++E+ +     V+  Y    + T KL +F +F+
Sbjct: 243 LLAREIASGELVSVLEEHLPEGAPVHLVYLRDRRATPKLTSFIDFV 288


>gi|229514299|ref|ZP_04403760.1| D-serine dehydratase transcriptional activator [Vibrio cholerae TMA
           21]
 gi|229348279|gb|EEO13237.1| D-serine dehydratase transcriptional activator [Vibrio cholerae TMA
           21]
          Length = 314

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 2/143 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AA++L L+ S+IS +I+ LE E+GIKLF R  R + LTE
Sbjct: 16  SFQLSKLHTFEVAARHNSFSLAADELSLTPSAISHRINKLEEEIGIKLFERTHRKVVLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +++    +  + L    I+++    + SG L I +     Q  L   +  F  LYP 
Sbjct: 76  EGQRIYHSLQKTLNNLNQEIIDIKNG--ETSGLLTIYSRPSFAQCWLVPRIHAFKELYPS 133

Query: 122 IQIQLILDNKDIDISMDYADCAI 144
           I ++L+  N++I       D AI
Sbjct: 134 IDLKLLTGNENISFQGSGIDVAI 156


>gi|153008469|ref|YP_001369684.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560357|gb|ABS13855.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 299

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 111/256 (43%), Gaps = 16/256 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+++R+F  VA+ G+   AA+ L ++ ++I R IS LE  +  KLF R A G  LT+ GS
Sbjct: 9   WNEVRMFLAVAQGGTVRAAADALDVNHATIIRGISRLEETLETKLFDRLASGYRLTDAGS 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +  +  ++       +  +     + SG LR    I +  +LL  +L +F   YPDI +
Sbjct: 69  DIVELAGQMATASSQIEARIFGRDQRVSGPLRFTLPISMATDLLMPSLADFKAAYPDIGL 128

Query: 125 QLILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++     I++    AD A+R  +       +L   +L   HM A+     L     P S
Sbjct: 129 EIVGSTSMINLVNREADVALRVVVGGKTPPDNLYGTRLCQFHM-AFYIHRNLMTQPSPAS 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L   N     + +P   E    +     P+    I         S  Q    G GI+
Sbjct: 188 ATWLLGPN-----EHVPSDWESATGIKMAANPVRFAEIG--------SQFQATRAGMGIS 234

Query: 243 LLPDYIVKDNPNLVRI 258
            LP ++    P L+R+
Sbjct: 235 FLPCFLGDSEPKLIRV 250


>gi|116252262|ref|YP_768100.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256910|emb|CAK08004.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 304

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 109/248 (43%), Gaps = 12/248 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L V+  V R+GSF+ A+ +  ++ S+I RQI  LE ++G+ L  R  R L LT+ GS 
Sbjct: 8   EHLAVYVDVVRTGSFSAASRRRAVTPSAIVRQIDALEQDLGVSLLVRSTRALALTDAGSH 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   L  T  E+       +G LRIA     G+  +   L      +PD+ ++
Sbjct: 68  LFDRAQRLLDDLADTHAEVAAFDDAVTGTLRIACFPTFGKRYVIPVLAALAQQHPDLHVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D   +  D  +R+ + +Q SSLI  KL  ++    A+  YL     P  I +
Sbjct: 128 LDLTERLADPVAERLDLVVRMGE-LQDSSLIATKLAPLNRILVASEGYLAVHETPRVIGD 186

Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI 241
           L K  L+      DL+        W        G        + + + ++    + G GI
Sbjct: 187 LRKQRLLDKLHGNDLL-------GWSDLFGTSAGHASNKVAFRSDDFEALNGAALSGMGI 239

Query: 242 ALLPDYIV 249
           A LP ++ 
Sbjct: 240 AFLPSWVA 247


>gi|70728916|ref|YP_258665.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343215|gb|AAY90821.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 301

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 132/295 (44%), Gaps = 23/295 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  V   GS+T AA+ L +S++  S  I  LE  +   L  R  R +TLTE G  L
Sbjct: 13  RVQTFLAVVDFGSYTRAAQYLGISKAMASLHIKALEQALASTLLIRTTRQVTLTETGQAL 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   ++T    +     + SGKLRI++T +  +  +   L  F   YP++++  
Sbjct: 73  YDEFKGIVANIDTAFDNVLHGRDRVSGKLRISSTAEYAETFVLPILPLFTARYPEVRLSY 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++   D+  +  D  IRL   +  S    R+L    +   A+P  LK+ R+    +EL
Sbjct: 133 HFNSSLNDLVAEKLDLVIRLGH-LADSGFKGRQLADYAIVLVASPALLKD-RQVTQPEEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--------NSYLSIMQYCVLG 238
           D    I   +L       F+           PR   ++V        NS  +I    + G
Sbjct: 191 DAWPWIGNSNLGGPPGWTFS----------HPRRGEVEVKVSPGHESNSATAIRAMALAG 240

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+A+LP+++V D   N  LVR++ +    +  V+  +P +     K + F +F+
Sbjct: 241 LGLAVLPEWMVLDDLGNGRLVRVLPEYRLATQPVHVLFPNSAHLPRKSRVFIDFL 295


>gi|87119099|ref|ZP_01074997.1| putative transcriptional regulator (LysR family protein)
           [Marinomonas sp. MED121]
 gi|86165490|gb|EAQ66757.1| putative transcriptional regulator (LysR family protein)
           [Marinomonas sp. MED121]
          Length = 297

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +       G+F+ AAE+L ++ S +SR I  LE ++   LF R  R   LT++G  
Sbjct: 7   EELEMLVATVNCGNFSKAAEELGVTASVVSRTIKKLENKLNTTLFNRTTRKTQLTQEGQW 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    S +  + +  + +L E +  P+G+L +        + +   +  F   YPD+ + 
Sbjct: 67  LFNEASAMIAQGQRVESQLGERTDAPAGRLVVDAATPFSLHAIAPLIAGFNQEYPDVTVI 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +     +ID+     D AIR+   +  S+L  RKL       YA+P YL     P S  +
Sbjct: 127 MTSTESNIDLIERKVDIAIRIGH-LTDSTLKARKLGETSRQLYASPSYLDKYGLPKSPSD 185

Query: 186 LDKHNLITF 194
           L +HN + F
Sbjct: 186 LKQHNCLGF 194


>gi|86146275|ref|ZP_01064600.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85835986|gb|EAQ54119.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 295

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 9/284 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F V    GSFT AA+++ +S+S +SR +  LE  +  +L  R  + L+LTE G +  
Sbjct: 7   IKSFIVTVEEGSFTGAAKKIGVSKSLVSRHVRELEAYLNTRLLNRSTKSLSLTEVGRRYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E     L+  S +  G L +     L + +L   + +F   YPD+   L+
Sbjct: 67  NEAHGLVDGIEDLNDSLRFDSSEMVGSLSVMAPKGLTEIMLMPFILKFSNKYPDVAFNLM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L +   D++    D AIR    +     +I R +        A+P YL+N  E  +  +L
Sbjct: 127 LSDGVQDLATVGYDIAIRSGDLVSKDLGMIARTIFVNQNLVCASPKYLENNTEITTPIDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
             H +I      P    D  W         +  +   L VNS  ++      G GIA+LP
Sbjct: 187 ANHTIIE----DPNLKNDGVWRFEFGGYFHDVNLKPTLTVNSVQAVKVAVRFGYGIAMLP 242

Query: 246 DYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             + +++     +V I+        TVY  Y E +    K+K F
Sbjct: 243 RQLAEEDVESGAIVEILSQYTLKERTVYALYRERVNTPRKVKVF 286


>gi|84394407|ref|ZP_00993125.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84374976|gb|EAP91905.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 306

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 23/293 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F+ + +   FT AA+ L++S S IS+QI+ LE  +GIKL  R  R LTLTE G   ++ 
Sbjct: 3   IFHALIKHEGFTSAAKSLNVSVSHISKQIALLEDSIGIKLVQRTTRSLTLTEAGEVFYQH 62

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++++ ++  Q+++       SG  RI  +   G   +   + +   LYP ++I++ L 
Sbjct: 63  CEQLFNTVKAAQMDMDSQRDDISGIFRIGLSQSFGTLHIIPAIDQLRQLYPQLRIEVHLF 122

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+  +  D  I   + +    + QR L        A+P YL     P    +L  H
Sbjct: 123 DYKVDMIEERLDLWITNNEDLPEGYIAQR-LADSQFVVAASPDYLIKAGTPHVPSDLIDH 181

Query: 190 NLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLGSGIAL 243
           N      LI +  E D+   A  +   G+  +S      Y      ++    V G G+A 
Sbjct: 182 NC-----LIYRSRERDYTSWAFDN---GQENLSVKVAGDYSVDLAEAVRDAAVSGWGVAY 233

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTV------YFCYPEALKNTGKLKAFRNFI 290
           L  Y+VK+     ++++  + P +        Y  YP       KL A   FI
Sbjct: 234 LATYLVKEEFRTGKLIQ--VLPEWRASQLMPFYAVYPSRKNMPKKLSAVIEFI 284


>gi|167583915|ref|ZP_02376303.1| Transcriptional regulator [Burkholderia ubonensis Bu]
          Length = 309

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 138/280 (49%), Gaps = 16/280 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKVTLDELQAFATVIDTGSITSAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E+ + ++     KPSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGQAFLQNARAIIESVESAEEQMTARREKPSGRLRVDAASPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R +    +   A+P YL+    P
Sbjct: 121 QVELELNSNEGIIDLLEKRTDVAIRIGR-LKDSTLHSRHIGNSRLRLLASPAYLEAHGHP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RIS-CLQVNSYLSIMQYCVLG 238
             +++L KH L+ F    P+ +  +  L T     GEP RI+  +  +S  ++ Q  + G
Sbjct: 180 RKVEDLAKHALLGFNQ--PESLNVWPILGT----DGEPYRIAPAIWSSSGETLRQLALDG 233

Query: 239 SGIALLPDYI-VKDNPN------LVRIMEDVITPSFTVYF 271
           +GI  L D++ V D         L R  +DV  P   VY+
Sbjct: 234 AGIVCLSDFMTVHDREAGRLVQLLARQTQDVRQPINAVYY 273


>gi|90420087|ref|ZP_01227995.1| putative transcriptional regulator, LysR family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335421|gb|EAS49171.1| putative transcriptional regulator, LysR family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 308

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 7/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + V   VA  GS + AA +L +  +++SR ++ LE  +  +LF R +R L LT+ G    
Sbjct: 7   MSVVIAVADEGSLSAAASKLAMPVATVSRGLAELEAALNTQLFTRSSRHLKLTDAGRSYV 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + ++      PSG L + +   LG   L      F+  +  I ++L+
Sbjct: 67  EACKRILEDVEGAERDVSGEYRTPSGDLAVTSPWGLGHMHLLPIACAFMAEHTAINLRLM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +    D+ D AIR+  P+  SS+I  +L ++ +   A+P Y+ +   P   ++L 
Sbjct: 127 LTDRIMRPMEDHIDAAIRI-GPLADSSMIATRLGSVRIVLCASPEYVADRGRPEDPKDLI 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ IT  D        F    T+   + EP  S L VN+  + +   + G+GIA +  Y
Sbjct: 186 AHDCITIDDFGAPGSWKFLRQETI---VAEPIRSRLTVNTSEAAVAAAIAGAGIAQVMGY 242

Query: 248 ---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                +   +LV ++E+   P   V+  Y        KL+AF ++   + R
Sbjct: 243 KMEAARQAGSLVILLEEFEQPPLPVHVVYSGRKPMPLKLRAFLDWATPRLR 293


>gi|295700211|ref|YP_003608104.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439424|gb|ADG18593.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 317

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 131/301 (43%), Gaps = 17/301 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F     +GSFT AA  L  + S++S+ I+ LE  +G++LF R  R   L+ +G
Sbjct: 5   NLNGLAAFVRAVETGSFTSAAHSLGTTPSAVSKSIARLEKRLGVRLFQRSTRAFLLSVEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   + +   LE    E+  S    SG+LR++   +LG+ LL    +  +  +P++ 
Sbjct: 65  QAYYEQVAPLVRGLERAD-EVLRSPATVSGRLRVSLPGELGRLLLDPVTRHLMTKHPELA 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + + ++ +D+  D  D AIR    +  S L    +  + +   AAP YL+    P  I
Sbjct: 124 LDVSVSDRHVDLIRDGFDIAIRA-GWLGDSGLHAHTIAELPLVLVAAPDYLREHGTPRRI 182

Query: 184 QELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +L  H  + +   G   P    D   +A VD             +S  ++    + G G
Sbjct: 183 ADLAAHRHVRYRLSGRAYPVIFADGTTVA-VD--------GVFDADSGDAMRVAALNGLG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA +    V+D+     L  +++     S  V+  +        + + F +F+  +   W
Sbjct: 234 IAQILAIAVRDDLAAGRLCTVLQGHAMASVPVHALHAFGRNIPMRARVFMDFVTAQLVGW 293

Query: 298 K 298
           K
Sbjct: 294 K 294


>gi|242238068|ref|YP_002986249.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242130125|gb|ACS84427.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 320

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 102/196 (52%), Gaps = 11/196 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++ VF  V  +GSF+ AA QL  + S+ISR I+ LE  +  +L  R  R L L++ G  
Sbjct: 18  EEMAVFAKVVETGSFSEAARQLGATPSAISRSINRLEKALNTRLLQRTTRKLRLSDSGQV 77

Query: 66  LHR----VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +++    + +E    + T+ +     +  P+G +R++    +G  L+  ++ +FL  YP 
Sbjct: 78  IYQHCQNMVNEALAAISTSGV----FNDAPAGIVRLSVPKAVGHFLIHPHIPDFLEQYPK 133

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + I + L+++ +D+  D  D AIR+  +P     L+ RKL TI     A P YL+    P
Sbjct: 134 VDIVMRLEDRYMDLIDDQIDVAIRITNQP--PPGLMGRKLTTIDHVLCATPAYLEKQGIP 191

Query: 181 LSIQELDKHNLITFGD 196
               +L +H  I  G+
Sbjct: 192 QHPHDLKQHCCIYLGE 207


>gi|163859034|ref|YP_001633332.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262762|emb|CAP45065.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 299

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 132/295 (44%), Gaps = 15/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  SG FT AA +L +S S +SR ++ LE  +G++L  R  R +  T+ G+   
Sbjct: 7   MKTFVAVVESGGFTAAARKLDVSLSVVSRIVTELEAHLGVRLLTRTTRVVRPTDTGAAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E   +    +   P G L +   +  G   +   + E+L  YP++ +  +
Sbjct: 67  ENCKRILGEIEEADLAAAGTHAAPRGSLVVTAPVLFGARHVTPIVVEYLQRYPEVDVHCV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +++I+   +  D  IR+ + + SS+L    +  +     AAP YL+    P ++ +L 
Sbjct: 127 LVDRNINFIDEGVDVGIRIGE-LPSSTLQAILVGRVRRVVCAAPAYLQRHGLPRTLDDLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIAL 243
           +H LI    +    + ++ ++       GEPR       L  ++  S +   V G G+A 
Sbjct: 186 RHTLIQTTGV--NTLPEWRFMEQ-----GEPRPLRIAPRLATSTNDSAISAAVAGLGLAR 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  Y V     +  L  ++ +   P   ++  + E      K++AF +    + R
Sbjct: 239 VLSYQVAAELHDGRLRVVLAEYEPPPVPIHVIHREGRHAMRKVRAFLDLAIDRLR 293


>gi|149914857|ref|ZP_01903386.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           AzwK-3b]
 gi|149811045|gb|EDM70882.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           AzwK-3b]
          Length = 280

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 120/283 (42%), Gaps = 14/283 (4%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS T AAE+L LSQS++SRQ+  LE ++GI L  R  R + LT + +          HK+
Sbjct: 2   GSATAAAEELSLSQSAVSRQLQTLEEQLGIALIIRQGRRMVLTPEAANYAAEIRAALHKI 61

Query: 78  ETTQIELQESSVKPS-GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136
               +++   +V P+ G L +A     G   L   L +F   +P++ I L    K  + +
Sbjct: 62  SQATLKV---TVNPAGGSLSLAILPTFGMRWLVPRLADFARRHPEVTINLSTRIKPFNFA 118

Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGD 196
               D A+   +   S +   R L T  + A  AP  L      LS         +   +
Sbjct: 119 AKPFDAALHFGRADWSGTQALR-LKTEAVIAVCAPELLAG--RALSGPGDLLGLPLLHIE 175

Query: 197 LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---P 253
             P+      W A      G+  ++    + + +I Q  + G G+ALLPDY+ + +    
Sbjct: 176 TRPEAWR--AWFAAHGIEAGQ--VTGTIYDQFSTITQAALHGLGVALLPDYLAEQDLATG 231

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LVR    V       +  +P        L  FR+++  +A D
Sbjct: 232 RLVRAWGGVTETPGAYHLVWPVEKARDAALIKFRDWLSTQAED 274


>gi|99080948|ref|YP_613102.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037228|gb|ABF63840.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 298

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 131/290 (45%), Gaps = 15/290 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD ++VF  VAR  S + A   L +  +++ R+++  E  +   LF +  +G  L+
Sbjct: 1   MEPQWDDMKVFLAVARESSLSGAGRVLKMDPATVGRRVARFEAALKTSLFVKSPQGYALS 60

Query: 61  EQGSKL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
             G +L  H   +E+   +   +  L   S   SG++RI         +L          
Sbjct: 61  AAGDRLLGHAEAAEL--AMRAGEEALTGPSDTLSGQIRIGAPDGCANYILPQVCAAISKD 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            PD+ IQ++   + I++S   AD A+ +  P     L+Q K+   H+H  A  HYL++  
Sbjct: 119 NPDLDIQVVALPRVINLSRREADMAVTVSAPTAGKLLVQ-KITDYHLHLAATRHYLRDNH 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
               ++ L  H +I +   IP  + D   ++L      +G  R+S L  NS    ++   
Sbjct: 178 PIEKLEHLRDHRMIGY---IPDMIFDRELDYL----NDLGIERVS-LASNSVSVQIKMLA 229

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GS + ++ D+ +  +  L +++++  + + + Y    +  + + +L  F
Sbjct: 230 EGSALGVVHDFSLPSHRTLRKVLKEEFSLTRSFYLVRHQGDQRSDRLNRF 279


>gi|307728705|ref|YP_003905929.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583240|gb|ADN56638.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 310

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 88/189 (46%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F   A  GSF++AA +  L    +S  I  LE E+ ++LF R  R L LT +G +
Sbjct: 5   EDLQLFIRTAALGSFSNAAREADLLPGQVSAAILRLERELDVRLFARSTRSLKLTAEGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   L   +  L        G LRIA   DLG+N L   L  F  L+P + ++
Sbjct: 65  YLPYAQEVLSMLHEGRERLHGERHALQGTLRIAAPSDLGRNKLLQWLGAFRDLHPKLTLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D+  D  D AIR     Q+S +     V       A+P YLK    P S+ E
Sbjct: 125 LSLSDHVTDVFRDPVDLAIRYGAVEQASYVALALAVNNRRVLVASPEYLKRRGAPASLDE 184

Query: 186 LDKHNLITF 194
           L  H+ + +
Sbjct: 185 LVLHDCLPY 193


>gi|264677447|ref|YP_003277353.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262207959|gb|ACY32057.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 311

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 136/288 (47%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  V  +GSFT AA++L ++++ +S+Q++ LE E    L  R  R +  T+ G   
Sbjct: 20  RLAYFAAVVETGSFTAAADRLGITKAVVSQQVARLEREFHTTLLTRTTRKVVPTDAGRIF 79

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++  + +  +      EL E + +PSG LR+   +D G   +   + EF   YP  ++  
Sbjct: 80  YQRCASILKEAGDAFDELGEVAAEPSGTLRLTAPLDYGITAVVPAITEFTRHYPQCKVDA 139

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  ++ +D+     + AIR+   +   ++  R++ +      AAP   +   +    Q +
Sbjct: 140 VFSDQPLDLMSGQVELAIRVGW-LSHLNVQARQIGSFRQLLVAAPSLRRQVTQLKQPQHI 198

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +   +    L   C   F+      + +   P IS   +++ L++ +    G+G+++LP
Sbjct: 199 SELPFVANTALREPCNWSFSRSELERQSVTVHPAIS---LDATLAVREAVRHGAGLSVLP 255

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D+ V D+     L++++     PS  V+  +P A     K+KAF + +
Sbjct: 256 DFAVADDLKSGALIQVLPSWSLPSGGVHAVFPTARFRPAKVKAFVDLM 303


>gi|188533252|ref|YP_001907049.1| LysR family transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188028294|emb|CAO96152.1| LysR family transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 306

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 74/126 (58%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M++   +LRVF  VA+ GSF+ A + + LSQS++S  I  LE+E+GI+L  R  R + LT
Sbjct: 1   MNYTLRQLRVFVAVAKQGSFSQAGQSIGLSQSAVSHSIKELESEMGIRLLDRTTREVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L      +  +L TT ++++    + SG +R+A +  +  +L+   L    L YP
Sbjct: 61  EAGEQLASRLERMLEELNTTLLDVRSYGQQRSGTVRVAASQTISAHLMPQCLASSQLHYP 120

Query: 121 DIQIQL 126
           +I+I L
Sbjct: 121 EIKIML 126


>gi|186469884|gb|ACC85593.1| probable transcription regulator protein [Sinorhizobium fredii]
          Length = 297

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 124/307 (40%), Gaps = 44/307 (14%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LET++G+ LF R  + + L++ G
Sbjct: 10  DVTTLQAFECAARHGSFTQAAAELNLTQSAVSRQIKDLETQLGVLLFERVRQRVILSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + H+ E   +    +S +    L IA+    G   L   L +FL  YP   
Sbjct: 70  QKFLPEVRRLLHQTEELMVRAM-ASARADSSLSIASLPTFGSRWLVPRLPDFLRRYPGTV 128

Query: 124 IQLI-------LDNKDIDISMDY-------ADCAIRLRK---PIQSSSLIQRKLVTIHMH 166
           + L         D ++ D+++ Y       A C+    +   P+ S +L+    V +   
Sbjct: 129 LNLASRSAPFDFDEQNFDLAIHYGQPVWARATCSYLCSEIIVPVASPALLAANSVEVPED 188

Query: 167 AYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN 226
               P      R  L  Q  D + +   G       + F+                    
Sbjct: 189 IGGGPLLHLATRAKLWAQWFDANGVDNHGAYRGNRFDQFS-------------------- 228

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKD--NPNLVRIMED-VITPSFTVYFCYPEALKNTGKL 283
               +++    G G ALLP Y+++       +RI+ D  +    + Y   PE        
Sbjct: 229 ---MVIEAATAGLGFALLPRYLIEQELTAGTLRIVLDRPMQTENSYYLVVPEGKLENPIS 285

Query: 284 KAFRNFI 290
           +AFR +I
Sbjct: 286 RAFREWI 292


>gi|220922796|ref|YP_002498098.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219947403|gb|ACL57795.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 300

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 1/165 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R+   +A       AAE+L ++ S+  R++  +E  +G  LF RH  G   T  G 
Sbjct: 7   WDDFRLVKAIADQRGLAPAAERLGINPSTAFRRLGQMEAALGTLLFERHRAGYAPTPAGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++ R+ + +   +     +L    + PSG+LR+ T   L  +LL   +  F   YP++++
Sbjct: 67  EMVRIAARMEDDVAAFSRKLDGQLLAPSGELRVTTADSLFNDLLAPIIARFCDRYPEVRV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA 169
            ++L N+ +++S   AD A+R        +L+ R+L TI    Y 
Sbjct: 127 DVVLSNQPLNLSKRDADVALRATDG-PPDTLVGRRLATIAWALYG 170


>gi|238758554|ref|ZP_04619730.1| LysR-family regulatory protein [Yersinia aldovae ATCC 35236]
 gi|238703254|gb|EEP95795.1| LysR-family regulatory protein [Yersinia aldovae ATCC 35236]
          Length = 308

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T +G+  +
Sbjct: 7   MRIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITAEGTLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++    E          ++P GK+RI     L +N++   L +F   YP I + L 
Sbjct: 67  QRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALSDFYQRYPHITLMLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  ID+  +  DC +R   P     L  R +        A+P YL     P S+ +L 
Sbjct: 127 ANDSTIDLMREGVDCVLRAWLP-HDEQLAVRNIGQQPQITCASPAYLAKQGVPTSLDDLA 185

Query: 188 KHNLITF 194
            H  + +
Sbjct: 186 GHQAVGY 192


>gi|157375840|ref|YP_001474440.1| regulatory protein, LysR [Shewanella sediminis HAW-EB3]
 gi|157318214|gb|ABV37312.1| regulatory protein, LysR [Shewanella sediminis HAW-EB3]
          Length = 286

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 9/250 (3%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V  SGS T A+  L +  S+ISR +S LE ++   L  R+ R +  T  G KL     E
Sbjct: 2   AVYESGSITSASVDLGVMPSTISRSLSRLELKLDTSLIMRNTRKIEFTNDGLKLLAHAKE 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +   +   + E + +   PSG LR+     +  +L+   +K++L LYPD+ I+L    + 
Sbjct: 62  ITASVNNIEHEFRTNDSTPSGTLRVNGASPVLVHLVCPIIKKYLQLYPDVNIELQNSEEI 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           IDI    AD A+R+  PI  SS     + +      A+  YL+    P SI++L  H  I
Sbjct: 122 IDIIESKADIALRV-APITESSYHVTHIGSSKRRLLASSEYLRRYGFPSSIEDLKNH--I 178

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--NSYLSIMQYCVLGSGIALLPDYIVK 250
             G   P  +    W   ++   G+    C +V  +S   + +  + G+GIA + D++ K
Sbjct: 179 LLGLEGPSILN--TW--PIEDGKGKKLKICPRVVASSGEVLRKLTLSGAGIACISDFMTK 234

Query: 251 DNPNLVRIME 260
            + N  +++E
Sbjct: 235 SDRNNGKLIE 244


>gi|150377780|ref|YP_001314375.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032327|gb|ABR64442.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 300

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 86/183 (46%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     VAR G F  AA +L +S S++S  I+ LE  + ++LF R  R + L+  G + 
Sbjct: 7   ELEAVAAVARHGGFRPAARELGMSSSALSHAIAALEERLAVRLFNRTTRSVALSAAGEQF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +     LE     + E S +PSG+LR+       + LLQ  + E+   YP++ I++
Sbjct: 67  LSEIAPALQTLEKAIENVGEHSERPSGRLRLNMAPGAARILLQPLILEYSRRYPEVDIEV 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +N  +D+     D  IRL   I    +    +  +      +P Y    ++P+   +L
Sbjct: 127 VTENALVDVIGKGFDAGIRLTDSISPDMVAVPIIPKMRSVVVGSPRYFDGRQKPVVPGDL 186

Query: 187 DKH 189
            +H
Sbjct: 187 SQH 189


>gi|153837961|ref|ZP_01990628.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149748652|gb|EDM59511.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|328473367|gb|EGF44215.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 314

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  +FT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVIFSALIKHKNFTAAAKSLGVSVSHVSKQLSQLEESLGIKLVQRTTRSFTPTEAGKTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +V   + +  +E++    + +G +R+  +   G   +   ++E   LYP +Q+++
Sbjct: 68  YHHCEQVVQAVSSATLEMESQRDEVAGLVRLGLSQSFGTLHIIPAIQELRELYPQLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  +   + +    + QR L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMLAEGLDLWVTNNEHLPEGYIAQR-LTDCQFVVAASPDYLLKYDTPTEPNDL 186

Query: 187 DKHNLITFGDLIPKCME-DF-NWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
             HN      LI +  E D+  W  T  +     ++S    V+   ++    + G GIA 
Sbjct: 187 SLHNC-----LIYRSWERDYTGWAFTKGQQELNVKVSGNYSVDLAEAVRDAAIAGWGIAY 241

Query: 244 LPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y++ D      L++++ D   + S   Y  YP       K+ A  NFI
Sbjct: 242 LATYLLGDEFRTGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVINFI 292


>gi|238794778|ref|ZP_04638380.1| LysR-family regulatory protein [Yersinia intermedia ATCC 29909]
 gi|238725858|gb|EEQ17410.1| LysR-family regulatory protein [Yersinia intermedia ATCC 29909]
          Length = 308

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T +G+  +
Sbjct: 7   MRIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITAEGTLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++    E          ++P GK+RI     L +N++   L +F   YP I + L 
Sbjct: 67  QRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALNDFYQRYPHITLMLG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  ID+  +  DC +R   P     L  R +        A+P YL     P S+ +L 
Sbjct: 127 ANDSTIDLMREGVDCVLRAWLP-HDEQLASRNIGLQPQITCASPAYLAKQGVPQSLDDLA 185

Query: 188 KHNLITF 194
            H  + +
Sbjct: 186 GHQAVGY 192


>gi|330505674|ref|YP_004382543.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328919960|gb|AEB60791.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 298

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 29/303 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA++L L+QS+I RQI GLE+ + ++LF R  RG+ LTE G    
Sbjct: 11  LVAFESAARHQSFTKAADELSLTQSAICRQIGGLESFLNVELFRRSRRGVVLTEAGVAYS 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +     +E   + L  +    S +L +  T   G   L   L+ F  L+P++ + L 
Sbjct: 71  RKVAAQLDAVERDTLALMGNQGTSSIELAVVPT--FGTQWLLPRLRTFQQLHPEVTVHLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP-LSIQEL 186
              +    +  + D AI       S +           H     H L  C    L    +
Sbjct: 129 NRTRPFLFADTHFDAAIYYGDAEWSGT---------QAHFLMHEHLLPVCSPALLGDAPV 179

Query: 187 DKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           D   + T   L+ +    + W         +V R +  PR+    +     + Q      
Sbjct: 180 DAERIATL-PLLQQTTRPYAWRQWFAAQGMSVARDMTGPRLELFSM-----LAQAAQHEM 233

Query: 240 GIALLPDYIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIAL+P +++    KD   ++ +   V       Y   PE    +  LKAFR+++ ++A 
Sbjct: 234 GIALIPPFLIQRELKDGSLVIALDRAVPNNDRGYYLMVPERKAESSALKAFRDWLLVQAA 293

Query: 296 DWK 298
            ++
Sbjct: 294 TYQ 296


>gi|293394372|ref|ZP_06638672.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291423350|gb|EFE96579.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 302

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 125/246 (50%), Gaps = 11/246 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  +  SGS   AA +L LS S++S+ ++ LE ++G +L  R  R + LTEQG  +
Sbjct: 9   QLSIFVRIIESGSLAKAARELGLSPSAVSKSLAKLEQQLGTQLITRTTRNIFLTEQGEAV 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  + E    ++Q  S +P G+LR++ ++  G  +L   +  +   +P ++I +
Sbjct: 69  FNRAIMLIEECEDMFAQVQRPS-EPEGQLRLSCSVAYGSKILPDFISAYQRRFPKVKIHV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSS--LIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L++  I++S    D A+R+ + +  +   ++  K+  I+     +PHYL       +  
Sbjct: 128 ELNDNIINLSETPFDLALRITRQLAETENHVLLNKINWIYC---CSPHYLAGKPPIKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  IT     P      NW+ A  +  +  P  SCL  NS L+++   +  +G++ 
Sbjct: 185 DLTRHRCITN----PVMAYHDNWVFADHNGEVMVPVDSCLTSNSSLTLLSMLLNHNGVSC 240

Query: 244 LPDYIV 249
           LPDY+ 
Sbjct: 241 LPDYLA 246


>gi|152978982|ref|YP_001344611.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150840705|gb|ABR74676.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 288

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 14/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F  V + GS + A+++L++  ++ISRQI+ LE  + I+LF R   G+  T  G +
Sbjct: 4   NALRLFVAVVQDGSLSKASKKLNVPIATISRQIAELEKSLNIQLFDRFKSGVKPTMAGQR 63

Query: 66  LH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           L+ +V   + + +   Q+ L E   +  G LRI+   +    L    + +F   +P IQI
Sbjct: 64  LYEQVYLSIDNLVNAAQV-LNEEQAELKGILRISAPPNCTPVL--AWIADFQSQFPQIQI 120

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L +  +D++ D  D A R+   +     I +K++ +     A P+ L     P ++Q
Sbjct: 121 HCSLTDNLLDMAADGIDVAFRMGD-LHGDQFIAQKVLEVQAKWAAHPNLLAQLGTPQTVQ 179

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L  +     K +       T++ P           N   ++      G  + LL
Sbjct: 180 DLSNFPLAGWARKGEKTLSINMGKKTLNLPY------LFASNESFAVEFMAKQGKAVCLL 233

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            DY V+       LV I+ D  +P F +   Y      +  ++AF  F+  K  +
Sbjct: 234 ADYSVEHLAREYGLVPILPDFDSPKFALTMLYAAHRYPSSVVRAFVEFVMGKVNN 288


>gi|330980513|gb|EGH78616.1| LysR protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 145

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 74/141 (52%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + +KL  R  R + +T  G+
Sbjct: 4   FDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVKLLNRTTRRVNVTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  ++  P G+LR+     L   LL   L  F   YPDIQI
Sbjct: 64  VFYERVVRLLADMDDAETSLSSAASLPRGRLRVDVPSPLASMLLMPALPGFHARYPDIQI 123

Query: 125 QLILDNKDIDISMDYADCAIR 145
            + + ++ +D+  +  DC +R
Sbjct: 124 DMGVSDRMVDLIGENVDCVVR 144


>gi|254284508|ref|ZP_04959475.1| D-serine deaminase activator [Vibrio cholerae AM-19226]
 gi|150425293|gb|EDN17069.1| D-serine deaminase activator [Vibrio cholerae AM-19226]
          Length = 314

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 78/148 (52%), Gaps = 12/148 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF+  KL  F V AR  SF+ AA++L L+ S+IS +I+ LE E+GIKLF R  R + LTE
Sbjct: 16  SFELSKLHTFEVAARHNSFSLAADELSLTPSAISHRINKLEEEIGIKLFERTHRKVVLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQES-----SVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           +G +       +YH L+ T   L +      + + SG L I +     Q  L   +  F 
Sbjct: 76  EGQR-------IYHSLQKTLNNLNQEITDIKNGETSGLLTIYSRPSFAQCWLVPRIHAFK 128

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAI 144
            LYP I ++L+  N++I       D AI
Sbjct: 129 ELYPSIDLKLLTGNENISFQGSGIDVAI 156


>gi|153828050|ref|ZP_01980717.1| D-serine deaminase activator [Vibrio cholerae 623-39]
 gi|148876459|gb|EDL74594.1| D-serine deaminase activator [Vibrio cholerae 623-39]
          Length = 318

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 2/143 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AA++L L+ S+IS +I+ LE E+GIKLF R  R + LTE
Sbjct: 16  SFQLSKLHTFEVAARHNSFSLAADELSLTPSAISHRINKLEEEIGIKLFERTHRKVVLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +++    +  + L    I+++      SG L I +     Q  L   +  F  LYP 
Sbjct: 76  EGQRIYHSLQKTLNNLNQEIIDIKNGET--SGLLTIYSRPSFAQCWLVPRIHAFKELYPS 133

Query: 122 IQIQLILDNKDIDISMDYADCAI 144
           I ++L+  N++I       D AI
Sbjct: 134 IDLKLLTGNENISFQGSGIDVAI 156


>gi|121610128|ref|YP_997935.1| LysR family transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121554768|gb|ABM58917.1| transcriptional regulator, LysR family [Verminephrobacter eiseniae
           EF01-2]
          Length = 307

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 133/293 (45%), Gaps = 22/293 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +A +GS + AA +L ++  ++S+ ++ +E+ +G+ L  R  R ++LT +G       
Sbjct: 14  FSTLATAGSLSAAARELGITTPAVSKHLASMESRMGVTLVNRTTRRMSLTPEGEVYLEHA 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   ++  +  +  ++    G LR+  T   G++ +   + +F+  +P +++QL L  
Sbjct: 74  RRILSDIDGLEQLIHGATTSARGLLRVNATPGFGRSHIAPLVSKFIFGHPGVEVQLQLSV 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
               ++ D  D  IR   P   + +I R +        A+P Y+     P   ++L +HN
Sbjct: 134 NPPPLTEDSFDVCIRFGSP-PDARVIARHIAPNRRLLCASPVYIAKHGLPEVPRDLTRHN 192

Query: 191 LITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQV---------NSYLSIMQYCVLGSG 240
            I     I +  E +  W  T     G  R S  +V         N     + + + G G
Sbjct: 193 CIG----IRQGDEAYGVWRLTS----GCGRFSTTEVVKTRGNLTTNDGEIAVNWALDGHG 244

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +  ++ ++    +  LV+++    TP   ++  YP+  +N G+++AF  FI
Sbjct: 245 ILMRAEWDIERYLKSGRLVQVLPQCHTPDANIHAVYPKRHQNAGRVRAFVEFI 297


>gi|304392903|ref|ZP_07374834.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
 gi|303294901|gb|EFL89270.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
          Length = 300

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 8/207 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GS + A   L +S +  S +I+ LE  +G++LF R  R L+ TEQG   +
Sbjct: 9   IKTFVRVYDLGSMSAAGRDLRISAAVTSSRIADLERHLGVRLFNRTTRSLSPTEQGELFY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   +E  +  + + +  P G + +A  + LG+ L+   +  F   YPD+ ++L 
Sbjct: 69  KGAIRILDMIEEVEGSIADVTDSPKGTVFVAAPLGLGKKLIAPLVPSFKENYPDVNVRLR 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D + +  D A  L + ++ S +  R +        A+P YL+    P S ++L 
Sbjct: 129 LSDRKVDFTAEGLDAAFVLGE-LKDSEMRVRPVHEFKRVLCASPAYLERQGAPTSPEDLP 187

Query: 188 KHN--LITFGDLIPKCMEDFNWLATVD 212
            H+  L+ F        E+F W   V+
Sbjct: 188 NHHCLLLRF-----PGAEEFFWTLQVN 209


>gi|254492352|ref|ZP_05105524.1| LysR substrate binding domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224462244|gb|EEF78521.1| LysR substrate binding domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 305

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 140/309 (45%), Gaps = 29/309 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++++ F  +  +GS T AAEQ++  +S++S++++ LE  +   L  R  R  TLT  G  
Sbjct: 5   EEMQTFVRIVEAGSITRAAEQMNTVKSAVSKRLTDLEKRLATSLLKRTTRKQTLTGAGRD 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   +   +  L +     SG++R+A  I  G   L   L+ F   +PDI+  
Sbjct: 65  YYQHCVRILDDIYEVETALSDEQSALSGRIRLAVPITFGLMHLSPALRIFNQQHPDIRFD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +++  D+  +  D AIR+   +  SSLI RKL +  +    +P Y      P + ++
Sbjct: 125 IDFNDRQQDLVAEGVDLAIRVSN-LTDSSLIARKLTSTRLLICGSPGYFAEHGTPQTAED 183

Query: 186 LDKHNLITFGDL-IPKCMEDFNWLAT--------VDRPIGEPRISCLQVNSYLSIMQYCV 236
           L       +G + +       +W  T        V+ P      + L  N+   +    +
Sbjct: 184 L------LYGHVKLQYTHVSSSWQLTGHNGDTLSVNLP------AVLTANNGQFLHDAAI 231

Query: 237 LGSGIALLPDYIVKDNPN---LVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFI-- 290
            G G+ L PD+I  D  +   L+ ++E  +I     VY  YP+    + +++   +F+  
Sbjct: 232 EGKGLILSPDFICSDAISKGLLMPVLEQSLIHTEIGVYAVYPQTRFLSRRVRLLIDFLKA 291

Query: 291 -FLKARDWK 298
            F +  +W+
Sbjct: 292 YFEERPNWR 300


>gi|83646953|ref|YP_435388.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634996|gb|ABC30963.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 309

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 20/209 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  VA  G F+ AA    +   +++R++  LE E+G +L +R AR L LT  G K
Sbjct: 3   DDLALFIKVAELGGFSIAAAATGVPAPTLTRRVQKLEAELGCQLLHRSARRLQLTAAGQK 62

Query: 66  LHRVTSEVYHKLET--TQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              V  E Y  L     Q+ L +  +    G++R+   ++L    L+    +F+  YP+I
Sbjct: 63  ---VFDESYLHLSCLDKQMALIKKDISAEEGEIRVLAPVNLANGPLRPLWGDFMSRYPNI 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L L+NK  D +   A+ A+R+  P+ +S+L QR+L +I     A P          +
Sbjct: 120 QLTLQLNNKVEDFTGSQAELAVRV-GPLANSALRQRRLGSIRTVLVATPD---------T 169

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV 211
             +++        DL P  +E + W+A+V
Sbjct: 170 AAQIEAQG----ADLNPAELERWPWVASV 194


>gi|332163372|ref|YP_004299949.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607868|emb|CBY29366.1| transcriptional regulator, LysR family [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667602|gb|ADZ44246.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862213|emb|CBX72375.1| hypothetical protein YEW_DQ15760 [Yersinia enterocolitica W22703]
          Length = 319

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 138/303 (45%), Gaps = 40/303 (13%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  +  +GS + AA +L  SQ +ISR++  LE  +G+KL  R    + LT+ G + +
Sbjct: 15  MQTFIRIVEAGSLSGAAVRLGTSQPTISRRLQTLERLLGLKLLQRTTHIMKLTDDGERCY 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++     T + +L+ ++ +P G LR+      GQ+ L   LK+FL  YP + ++ +
Sbjct: 75  SHAKQLIESWNTMEDDLRGATDEPRGLLRVLVPHAFGQDQLIKPLKDFLHQYPKMSVEWM 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++  D   +  DCAI++   +   S++   L  +     AAP  L N  +PL  +   
Sbjct: 135 LNDRRPDFIAEGIDCAIQVGS-VTDPSVVAILLAEVPRIVVAAPELLDN--QPLPTR--- 188

Query: 188 KHNLITFGDLIPKCMEDFNWLA-----------------TVDRPIGEPRISCLQVNSYLS 230
                      P+ ++DF+WLA                  + R   +P++S    +S  +
Sbjct: 189 -----------PEQLQDFHWLALNTFYRNEVVLSHKTNGEIHRFSIQPQLST---DSLYA 234

Query: 231 IMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +    + G G  +   ++V D+     LV +  D       +Y  YP A     +L+AF 
Sbjct: 235 LRNAALTGLGAGIASTWVVNDDIKQGRLVHLTPDWHGLPLPIYLVYPHASYYPARLRAFL 294

Query: 288 NFI 290
           + +
Sbjct: 295 DIM 297


>gi|229528273|ref|ZP_04417664.1| D-serine dehydratase transcriptional activator [Vibrio cholerae
           12129(1)]
 gi|229334635|gb|EEO00121.1| D-serine dehydratase transcriptional activator [Vibrio cholerae
           12129(1)]
          Length = 314

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 2/143 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AA++L L+ S+IS +I+ LE E+GIKLF R  R + LTE
Sbjct: 16  SFQLSKLHTFEVAARHNSFSLAADELSLTPSAISHRINKLEEEIGIKLFERTHRKVVLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +++    +  + L    I+++    + SG L I +     Q  L   +  F  LYP 
Sbjct: 76  EGQRIYHSLQKTLNNLNQEIIDIKNG--ETSGLLTIYSRPSFAQCWLVPRIHAFKELYPS 133

Query: 122 IQIQLILDNKDIDISMDYADCAI 144
           I ++L+  N++I       D AI
Sbjct: 134 IDLKLLTGNENISFQGSGIDVAI 156


>gi|221200749|ref|ZP_03573790.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD2M]
 gi|221206944|ref|ZP_03579955.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD2]
 gi|221173018|gb|EEE05454.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD2]
 gi|221179321|gb|EEE11727.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD2M]
          Length = 297

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 123/283 (43%), Gaps = 7/283 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VAR  SFT AA QL LS+S++S  +  LE  +G++L  R  R ++ TE G++L 
Sbjct: 9   LQAFVTVARERSFTKAAAQLGLSRSALSHAMLALEARLGVRLLTRTTRSVSTTEAGTRLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +    ++E     L E   KP+G +RI          L   L   L  YPDIQI+  
Sbjct: 69  NTVAPRLDEIELELGSLSEMRDKPAGTVRITAHDHAIGTALWPRLLPLLKEYPDIQIEFT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D    DI+    D  +RL   +    +  R      +    +P YL     P++ ++L 
Sbjct: 129 VDYGLTDIAAQRFDAGVRLGDQVDKDMIAVRIAPDQCLAVAGSPEYLAGRSLPVTPRDLT 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
           +H  +     +P     + W    D      R+    V N+   ++Q  + G G+   P 
Sbjct: 189 EHRCVNL--RLPTHGGLYAWEFEKDGEALSVRVQGQTVFNNTFLMVQAALDGMGLTYAPL 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            I++   ++  LV  ++D   P F  Y  Y  + + T    A 
Sbjct: 247 DILQPHFESGRLVPALKD-WWPVFAGYHLYYPSRRQTAPALAL 288


>gi|220926215|ref|YP_002501517.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219950822|gb|ACL61214.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 304

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 92/189 (48%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +   V  +GSFT A  +L +   ++SR+++ LE  +G +L  R  R L LTE G+ 
Sbjct: 5   EAMTILVAVVETGSFTAAGRKLGIPLPTVSRKLAELEAHLGTRLLTRSTRRLALTETGAD 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++   + +       P G+L +   +  G+  +   + EFLL YPD+ ++
Sbjct: 65  YVAGCKRILEEIGDIERKASGEYAVPKGELVVTAPVVFGRLHVLPIVSEFLLTYPDVDVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L +++  +  D+ D A+R+   +  SS++  ++ T+      +P YL     P    E
Sbjct: 125 LLLSDRNAHLLDDHIDLAVRIGI-LPDSSMMATQVGTVRKVVCGSPSYLAKYGTPTKPDE 183

Query: 186 LDKHNLITF 194
           +     +TF
Sbjct: 184 VSGLPCVTF 192


>gi|170719412|ref|YP_001747100.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757415|gb|ACA70731.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 303

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 121/262 (46%), Gaps = 9/262 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L +R +R  +LTE G
Sbjct: 3   DLNSLYYFTQVVEHGGFAPAGRALDMPKSKLSRRIADLEDRLGVRLLHRTSRHCSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E     ++ +  +P G +RI+    L  + +   L  ++L YP ++
Sbjct: 63  QAYYNRCLAMRVEAEGAAEIIERNRSEPRGLVRISCPTTLLNSWVGPMLTRYMLKYPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D A+R+R  P++++ ++ + L          P YL++  +  +
Sbjct: 123 LFIESTNRRVDLLHEGFDVALRVRFPPLENTDMVMKVLSNSTQCLVGHPQYLEHLPKGFN 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL----ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            Q L     + +G        ++ W       + R I  P    +  +   ++  + V G
Sbjct: 183 PQLLGTLPSVHWG----SAQREYQWELFQGEDMSRSIVIPHTPRMVTDDLFALRHFVVAG 238

Query: 239 SGIALLPDYIVKDNPNLVRIME 260
            GIA LP   V+++    R++E
Sbjct: 239 VGIAHLPRVAVREDLAEGRLVE 260


>gi|187921376|ref|YP_001890408.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719814|gb|ACD21037.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 308

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 128/302 (42%), Gaps = 23/302 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF      GS   A+ +L  S +++SR I+ LE  VG  L +R  R + L+E G +
Sbjct: 5   DAMKVFVATLDEGSLAGASRRLGRSPAAVSRAIAFLEEHVGTALLHRTTRTIKLSEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   LE   + +      P G L I   +  GQ++LQ  + EF+  YP + ++
Sbjct: 65  YAAACRRILTDLEEADLLIAGERSAPRGLLTITAPVAAGQDMLQPIIDEFVDRYPAVSVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ + +  +  D A+R+   +  S+L+   +  +     A+P YL          +
Sbjct: 125 LNMLDRPVSLIDEGMDLALRIAH-LPDSTLVAIPVGEVRRVVAASPRYLAKHPPITDPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDF---NWLATVDRPIGE--PRISCLQ----VNSYLSIMQYCV 236
           L +H +I+        M  F   +W  +   P G   PR+        VNS  + +   V
Sbjct: 184 LAQHQIIS--------MTHFGLDSW--SFPPPNGSTIPRVVQFTPRFIVNSIQAAVASAV 233

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+  +  Y V +      L  ++ D       V+   P       K++AF +F   +
Sbjct: 234 AGHGVTRMFSYHVAEQVKEGTLKIVLSDNEPAPLPVHLLTPHGRLAVPKVRAFVDFATPR 293

Query: 294 AR 295
            R
Sbjct: 294 LR 295


>gi|193782762|ref|NP_436513.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|307300846|ref|ZP_07580621.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|193073218|gb|AAK65925.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|306904380|gb|EFN34965.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 295

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 137/311 (44%), Gaps = 29/311 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA   +F  AA++L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDMNLLPLFLAVAEEDNFRAAADRLGVTRSAVSQGIRRLEDAFGTTLVTRTTRSVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLY 119
           E G +L    S+    +  T ++      +P G LRIA T  + +  L G L   F   +
Sbjct: 61  EAGERLREALSQPLSDI-GTALDRVAGEDEPRGLLRIAVT-SIAEQFLSGPLIASFAQAH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHY 173
           P + I + + +++ DI     D  +RL + I+   +       QR+L      A AAP Y
Sbjct: 119 PKVAIDVTVTDEEFDIVAAGFDAGVRLGEVIEQDMIAVPLTGDQREL------AVAAPTY 172

Query: 174 LKNCREPLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
           L     P   +EL  H  I +    ++ P   E        D  + EP+I+    N    
Sbjct: 173 LAVRGTPAHPRELVHHRCIGWRRAPNVAPYRWEFEENGVPFDVAV-EPQITT---NDLRF 228

Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +++  + G+GI    +   +   +   LV +++D + P    +  +P+    T K++A  
Sbjct: 229 MLRSALCGAGITFATEETFRPFVETGELVPLLQDFLPPFPGFFLYFPQRRNMTPKMRALI 288

Query: 288 NFIFLKARDWK 298
             +    R W+
Sbjct: 289 EHV----RRWR 295


>gi|219870473|ref|YP_002474848.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
           SH0165]
 gi|219690677|gb|ACL31900.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
           SH0165]
          Length = 296

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 121/249 (48%), Gaps = 10/249 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+   +F  V  + SFT AA+Q  +S +  S+ ++ LE  + ++L  R  R ++ TE 
Sbjct: 2   DKLKAINLFCKVIETQSFTQAAQQEQISLAMASKLVAQLEEHLNVRLLQRTTRRISPTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + ++L+  +  +   +    GKL ++  +D G   +  +L  F   YP +
Sbjct: 62  GLLFYQRCQPILNELKDAEACVTNITSTLQGKLTMSLPMDFGSRFVAPHLHRFTETYPHL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L   ++ +D+  +  D  +R+ K ++ SS++ +++        A+P YL+    P +
Sbjct: 122 QLNLEFSDRRVDVVAEGYDLVLRIGK-LEDSSIVAKRIAQAQHLIVASPRYLEKFGTPQT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +H  + +     + +  FN      +   +P+      N Y +++Q    G GI 
Sbjct: 181 AWELQQHQCLRYES---QTLWQFN--ENGHKIKFKPQSQVYSNNGY-ALVQMARAGHGII 234

Query: 243 LLPDYIVKD 251
            +P +++KD
Sbjct: 235 NIPKFLLKD 243


>gi|218463758|ref|ZP_03503849.1| LysR family transcriptional regulator [Rhizobium etli Kim 5]
          Length = 303

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 5/245 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF    + GS + A+ +L +S + + + ++ LE  +G +L  R  R  +LT+ G    
Sbjct: 7   MQVFVTTVQEGSMSAASGKLGISPAMVGQHVAALEERLGTRLLNRTTRRQSLTDFGKSYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++     + + S  KP G L++      G  +L   L  +  + P++ + + 
Sbjct: 67  EQCRDILERVAIADQDAEASQTKPRGLLKVTAPTTFGAEVLMPALPRYREIAPEVMLDIT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++++DI  +  D AIR+   +  S LI R+L    M   A+P YL     P     L 
Sbjct: 127 LTDRNVDIVDEGFDIAIRIGD-LPDSRLIARRLAPYRMMICASPDYLARHGNPAHPSALS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I F    P     +      +     PR+  + VNS  ++      G GI + P  
Sbjct: 186 GHETIGF---TPAARSPWRLSKGKEEVEVVPRLP-ISVNSGQAVRMAARAGLGIVMQPAI 241

Query: 248 IVKDN 252
           ++  +
Sbjct: 242 LLASD 246


>gi|327440721|dbj|BAK17086.1| transcriptional regulator [Solibacillus silvestris StLB046]
          Length = 304

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 18/245 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F ++     FT AAE+L+++Q ++S+QI  LE EV   LF+R  + +TLTE G
Sbjct: 2   ELRQLEYFLMLCEEMQFTRAAERLNIAQPTLSQQIKVLENEVNTPLFHRIGKKITLTEAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+R    ++  L TT+I++Q+ +    G LRI        N++   + +F+  +P IQ
Sbjct: 62  QILYRQAQTIFQTLHTTKIQMQQLASLEKGILRIGALPGELTNIVSDLVLKFMHKFPHIQ 121

Query: 124 --------IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
                   I  +L N  IDI   ++       +      L   +   +     AA H   
Sbjct: 122 VTVTSGEDIHTLLKNNKIDIGFSFSPLIENYDEQFVEIPLYTEQFCYVESKDSAAQH--- 178

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
              EP+ ++++    L+ F +    C    N  A  D+   EP+    + +S  +I Q+ 
Sbjct: 179 ---EPVQLRDILNEPLVLFPN-AHLCRRILNAAAKSDKLSIEPK---FETSSIPAIFQFV 231

Query: 236 VLGSG 240
             G G
Sbjct: 232 EQGLG 236


>gi|330820302|ref|YP_004349164.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327372297|gb|AEA63652.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 295

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 65/120 (54%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  +A  GS + AAE L LSQS +SRQ++ LE  VG  LF RH RG+  T+ G +L 
Sbjct: 9   LRLFLEIANRGSLSAAAEALSLSQSGLSRQLAALERHVGQPLFVRHGRGVEPTDAGRRLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 Y  ++   ++L+E     +G L +AT   LG + +   +  F+   PD  + L+
Sbjct: 69  EAARPAYQAIDDAVMQLRERHGLTAGNLNVATVHTLGHDFVSEIVARFMRQRPDASVSLL 128


>gi|300312785|ref|YP_003776877.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300075570|gb|ADJ64969.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 117/259 (45%), Gaps = 12/259 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+  R F  V  +GS + A  ++ L+Q ++ R I  LE+ +G+KLF R   G + T+  
Sbjct: 7   NWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFSPTDAA 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +       +        +  G +R+  +  +   +L   L      +P+++
Sbjct: 67  LELKPYAAAIAANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRHRHPELR 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L NK  D+    AD A+R+ +P Q  +L+ ++L +I +  +A   YL     P S+
Sbjct: 127 VELVLSNKADDLLQREADIAVRMFRPAQ-DALVAKRLGSIELGLHAHQSYLTVHGAPKSV 185

Query: 184 QELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             L  H LI F      +   ++   WL+             L+ +S L+ +     G G
Sbjct: 186 DALADHTLIGFDQESAYVRNVLKQIPWLSRA--------ALALRTDSDLAQLAAIRAGFG 237

Query: 241 IALLPDYIVKDNPNLVRIM 259
           I +    +   +  LVR++
Sbjct: 238 IGICQVALAARDVALVRLL 256


>gi|299134116|ref|ZP_07027309.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gi|298590863|gb|EFI51065.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 315

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 122/263 (46%), Gaps = 15/263 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD LRV   VAR GS   AA+ L +  S+++R+I+ +E  +  +LF R  RG+T   +  
Sbjct: 9   WDDLRVILEVARQGSIYSAAKILKVDHSTVTRRIAHVELILERRLFDRSNRGITARPETE 68

Query: 65  KL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
            L  H    EV+       I   E+  +    +R+AT   L    L   +++  L  P I
Sbjct: 69  HLLEHIRQMEVHAAAMHEAIGHVETQTR---AIRVATMEGLASGYLARRIQDITLDDPSI 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L  +   +D+     D  +    P Q   LI +++    ++ Y +  Y  +   P S
Sbjct: 126 RIELFSNPHIVDLLKKETDIFLSFFDP-QIPGLISQQIGETAIYLYGSERYRAHHGLPTS 184

Query: 183 IQELDKHNLITFGDLIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             EL  H  + +   IP+   +E   WL   D+ +    ++    NS ++     + G+G
Sbjct: 185 QAELGSHRYVGY---IPEMITIESVKWL---DQIVPNAHLAFCS-NSVIAQRNAAIAGAG 237

Query: 241 IALLPDYIVKDNPNLVRIMEDVI 263
           + +LP ++ ++N  L R+M D I
Sbjct: 238 LVVLPTFVGEENEALFRVMPDEI 260


>gi|154245454|ref|YP_001416412.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159539|gb|ABS66755.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 304

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 146/298 (48%), Gaps = 29/298 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  L +FY V++  SF+ AAE+L+ +Q ++S++I+ LETE+  +LF R +R ++LTE+G
Sbjct: 3   DFRSLEIFYWVSQLESFSKAAERLNTTQPAVSQRIAALETELRTRLFERSSRSISLTEKG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +E + +L +  +E   +     G +R+     + Q  L   ++    +YP++ 
Sbjct: 63  RVLVDY-AERFLRLRSAMLEAVATPEAMRGVVRLGVAETIVQTWLSRFIERAHAVYPNVL 121

Query: 124 IQLILDNKDIDISMDYADCAIR-------LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           I +      +D+S    D  ++       L  P+   ++    L +  + A+ A   L  
Sbjct: 122 IDIT-----VDVSPVMRDALVKRELDLAFLLGPVNEPNMSNLDLGSYAL-AFIAASDLSL 175

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRP-IGEPRISCLQVNSYLS-IMQ 233
             EPLS ++L K+ LIT+    PK    + +L  +   P IG PR+     NS LS I++
Sbjct: 176 AAEPLSRRDLLKYPLITY----PKSTYPYTFLREILSIPEIGSPRLFS---NSSLSTIIR 228

Query: 234 YCVLGSGIALLPDYIVKDN--PNLVRIME-DVITPSFTVYFCYPEALKN--TGKLKAF 286
                 G++++P  +++       +R++E +V  P       YP A+     G L A 
Sbjct: 229 MTEDHIGLSVIPPDVIRAELAAGKLRVVETEVALPDLAFTASYPMAMGGGIAGPLAAL 286


>gi|254254158|ref|ZP_04947475.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124898803|gb|EAY70646.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 322

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 127/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  +
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTPQTPGD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L  H  +          E   W   ++R  GE  +     +  QVN   ++      G G
Sbjct: 185 LPNHVCLRLDTPASPAGE---W--RLERGDGEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F
Sbjct: 240 IACVALYTVLDDLREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|332160197|ref|YP_004296774.1| LysR family regulatory protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664427|gb|ADZ41071.1| LysR family regulatory protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860115|emb|CBX70439.1| hypothetical protein YEW_BJ06860 [Yersinia enterocolitica W22703]
          Length = 308

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 130/302 (43%), Gaps = 31/302 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T +G+  +
Sbjct: 7   MQIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITAEGTLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E          ++P GK+RI     L +N++   L +F   YP I + L 
Sbjct: 67  HRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALSDFYQRYPHITLILG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  ID+  +  DC +R   P     L  R +        A+P YL+    P+S+ +L 
Sbjct: 127 ANDSTIDLLREGVDCVLRAWLP-HDEQLAARNIGQQPQITCASPAYLEKYGIPMSLDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRI--SCLQVNSYLSIMQYCVLG 238
            H  + +          F+ L   D P+        E R+  S L V+   + +   + G
Sbjct: 186 GHQAVGY----------FSQLNHRDYPLEFICQGKIENRVLPSILSVSGADAYIAAGMAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+   P   ++       L+ ++  +  P   ++  YP      G+  A R  + +   
Sbjct: 236 LGLIQAPTAGIQGQLAQSELIEVLSHIPPPVMPLFIMYP-----PGRFLAPRVRVLI--- 287

Query: 296 DW 297
           DW
Sbjct: 288 DW 289


>gi|229589780|ref|YP_002871899.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361646|emb|CAY48526.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 313

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 121/265 (45%), Gaps = 14/265 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +    V+   G++T AA +L +S+S++S++IS LE   G +L  R  R + LT+ G 
Sbjct: 10  WTHIHWLSVLQEQGTYTAAAARLGVSKSAVSQRISDLEKATGTRLVTRTTRSVRLTDAGL 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L R     Y ++  +   +++S+ +  G +R+   +   +  L  +L EFL  YP ++I
Sbjct: 70  SLTREVRSAYEQIARSFSSVRDSAGEIRGLVRLTAPVAFARQQLVPHLSEFLQQYPQVRI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + +    ++ +  D A+R    +  +  +  KL        A   YL+   EP    
Sbjct: 130 QLDVSDALSSLAAEGYDLAVRHGFQVPETH-VAWKLCDTGSVLVATRDYLQRHGEPREPG 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +L  HN + +    P+  +   W        V+R +  P       N+  ++    +   
Sbjct: 189 DLSAHNCLFY----PRGTDQPAWTFERGSKNVER-LTVPIAGSFATNNSEALRDSALNHL 243

Query: 240 GIALLPDYIVK---DNPNLVRIMED 261
           GIALLPD+       +  LV+++ D
Sbjct: 244 GIALLPDFSAHAALASGTLVQVLTD 268


>gi|227326217|ref|ZP_03830241.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 293

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            R F   A++GSF  AAE LH++  ++SRQI  LE  +G++LF R  R + L   G  LH
Sbjct: 36  FRFFEAAAQTGSFVKAAESLHVTHGAVSRQIRLLEEALGVELFERRNRAIFLNAAGRSLH 95

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            VT  V+ +LE     LQ+S+      L    TI +    L   L  F   +PDI++ L+
Sbjct: 96  TVTQSVFEQLEGAVYRLQQSAQDDVLTLSCEPTIAM--KWLIPRLPAFNQAHPDIKLHLV 153

Query: 128 LDNKDIDISMDYADCAIR 145
                ID      D A+R
Sbjct: 154 AAGGPIDFVRSGVDLALR 171


>gi|194367799|ref|YP_002030409.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194350603|gb|ACF53726.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 321

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 6/239 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GSF+ AA +  L    ++  ++ LE E+ ++LF R  R L LT +G+
Sbjct: 4   FDDLQLFVRTAALGSFSQAAREADLLPGQVAAAVARLERELDLRLFVRTTRSLRLTGEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  EV   L   Q  +Q    +  G L+++   D G+NLL   L  F   +P +++
Sbjct: 64  LYLPYAQEVLATLREGQARVQGEDAELHGTLQLSAPSDFGRNLLLPWLSAFRAAHPRLRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
            L L ++  D+  D  D AIR+      +S +   L+  +     AAP YL+    P  +
Sbjct: 124 HLRLSDEVADVFRDPVDVAIRIGH-FDDASYVALPLLEGNRRVLAAAPDYLQRNGMPTRL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++L +H+ + +  L  +  +   W   VD R +  P    L  +    + ++ V G GI
Sbjct: 183 EDLREHDCLVY-QLNGRAYD--RWSFDVDGRRVVMPVRGPLVCDDADVVRRWAVAGEGI 238


>gi|171321937|ref|ZP_02910826.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171092766|gb|EDT38042.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 323

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 118/253 (46%), Gaps = 7/253 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +  + G TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++    +  +    SG +RI +T   G   L   L  F + +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDLVANTGGALSGHVRIGSTEGFGCFFLAPQLARFRVAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +   ++  KL    +  YA   YL N    
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERPERGPYVVT-KLCDYQLRLYATRDYLANHAPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  +++ D +    E    L  ++R +     + L+  S ++ +   + G  
Sbjct: 190 TCTDDLARHAFVSYVDDLAFSSE----LLYLERAV-PGATAGLRTTSVIAQVFAALQGGA 244

Query: 241 IALLPDYIVKDNP 253
           +A+LP ++    P
Sbjct: 245 LAILPCFMAATQP 257


>gi|325522416|gb|EGD01000.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 301

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 97/194 (50%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDKLDGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEQRLGTRLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  +  L     +P GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALAELEAAEANLDCGRHEPRGKLRLSVPLAFGHHCVTPVVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    A+P YL     P
Sbjct: 121 HLRIDVSITDRFVDLVDEGIDLAVRIGPLADSTSLAVRRLGTQYGSLGASPSYLARYGTP 180

Query: 181 LSIQELDKHNLITF 194
            ++ +L  H  I +
Sbjct: 181 HTLDDLKTHRTIAY 194


>gi|325277813|ref|ZP_08143367.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097059|gb|EGB95351.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 310

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 123/293 (41%), Gaps = 18/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++E G +  
Sbjct: 7   MRTFARVVECGSFAAAANALDISAAQVSRIVAELENQLQTRLLHRTTRRLRMSEAGERFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E    E + + + P G+LR+     LG  LL   +  +  L P++ I+L 
Sbjct: 67  ERARQIMLLTEEAVGEARGAHLTPRGRLRLHCPHGLGL-LLMPLVAGYNALCPEVVIELT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D   +  D  I +   +  S LI   L  I     AAP YL+    P S ++L 
Sbjct: 126 LSQRNPDPLAEGHDVVITVDGALPDSQLIAVPLGNIFSIPCAAPAYLEANGVPESPEDLH 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +      P    D+ +   VD+ +  P+      N   +++    LG GI LLP Y
Sbjct: 186 GHRCLRMS--YPMYEGDWVFPQGVDQCVIVPK-DGFSTNVADAMLVASELGMGIGLLPFY 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                     L R++         +Y  YP            R+++  K R W
Sbjct: 243 TASQAIGQGRLCRLLAPYRLRESALYAIYPS-----------RHYLDAKVRTW 284


>gi|262279003|ref|ZP_06056788.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259354|gb|EEY78087.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 283

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 15/187 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      LR F   AR GSF  AAE+L L+ ++IS  I+ LE+ + + LF+R  R +TLT
Sbjct: 1   MQVSLQALRAFESAARLGSFKLAAEELSLTPTAISHHIANLESRLNVDLFHRQVRKITLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L    SE + K+E     L E +V     LR+ATT  L   LL  ++ EF  L+P
Sbjct: 61  TTGDRLAVAISEGFRKIEDA---LDEITVN-GNTLRVATTSSLAAMLLIPSINEFYQLHP 116

Query: 121 DIQIQL----ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           DI ++      L++    + + Y D ++     I SS +++ +   +   +   P  L++
Sbjct: 117 DISVEFSTGEALESHLYTLPIRYGDVSL-----IPSSDILKYESFNVFGTSKLDP--LEH 169

Query: 177 CREPLSI 183
             EP+++
Sbjct: 170 SSEPITL 176


>gi|229589027|ref|YP_002871146.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360893|emb|CAY47753.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 290

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 131/295 (44%), Gaps = 25/295 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F+V A+  +FT AAEQLH++Q ++SRQI+GLE+ +G  LF R ARGL+LTE+G +  
Sbjct: 10  LHTFWVTAQCCNFTRAAEQLHITQGAVSRQIAGLESHLGYALFQRQARGLSLTEEGREWS 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V+  L +  +E Q  S + + +L+ +T +      L   L ++    PD+ ++L 
Sbjct: 70  LRAHQVF-GLISEAVE-QIGSRRQTLQLKASTCV---MRWLLPRLMQWQRERPDVPVELT 124

Query: 128 LDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                 +D   +  D A+ +  PI   S   R L    +    AP  L     P  +Q+ 
Sbjct: 125 TTVAYTVDFRREQFDAAV-IYAPIAEQSAEARHLFDEQLTPVCAPALLGGLHTPADLQQ- 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI----MQYCVLGSGIA 242
                     L+    ++ +W   +       R++ L    +       M     GSG+A
Sbjct: 183 --------QVLLHPTRDERDWALWLK--AANTRLNNLSQGHHFETLDLAMTVASQGSGVA 232

Query: 243 LLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +    ++ ++    R+    E  +      Y  YP   K +  L+A   ++  +A
Sbjct: 233 IGDSALIGEDLKAGRLATPFELRVPTGMGYYLVYPPDTKPSAGLEALMVWLVSQA 287


>gi|307728710|ref|YP_003905934.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583245|gb|ADN56643.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 302

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 119/270 (44%), Gaps = 28/270 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   LR F  VA  G FT AA +LH+ Q  +S+QI  LE E+G  LF R  RG+TLT  
Sbjct: 1   MELRHLRYFLAVAEEGQFTRAAARLHIQQPPLSQQIQELEQELGFALFMRQPRGVTLTAP 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLG-QNLLQGNLKEFLLLYPD 121
           G         V  +L+   +  +  +    G +R+A T       L    ++ F  +YP+
Sbjct: 61  GETFAARARSVLLELDNAVVHARRVAQGQIGTVRVALTSSAAFHPLTPTAIRNFREMYPE 120

Query: 122 IQIQLILDNKDIDISM---DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYLKN 176
           I I++   N    I M   D AD AI LRKP+ + + ++ +L+         P  H L  
Sbjct: 121 IAIEMNEVNAAEIIEMMLNDRADAAI-LRKPVDTPTELRFELLAEERMLLVLPVGHRLIG 179

Query: 177 CREPLSIQELDKHNLI---------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227
            R  + +++L K + I          + D I  C E   +         EP +   +V  
Sbjct: 180 NRA-VPLKQLAKESFIFVRRPGAPGMYADFIRAC-EAKGF---------EPHV-VEEVPR 227

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVR 257
            ++ +     G G++L+P  + + +   VR
Sbjct: 228 MVTAINLVAAGGGVSLVPASMHRYHQESVR 257


>gi|242240410|ref|YP_002988591.1| DNA-binding transcriptional activator GcvA [Dickeya dadantii
           Ech703]
 gi|242132467|gb|ACS86769.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 308

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 132/298 (44%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++  L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSALNEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSEYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ +   D  D AI   +       +++         YA   YL     PL +  
Sbjct: 127 IQAVDREEERLPDDVDVAIFYGRGNWPGLRVEK--------LYA--EYLLPVCSPLLLT- 175

Query: 186 LDKHNLITFGDLIPKCM----EDFNWLA-TVDRPIGEPRISCLQVNSYLS-IMQYCVLGS 239
             +H L T  DL    +       +WLA T    I +  +    + S+ + ++Q  + G 
Sbjct: 176 -GEHPLKTPADLAWHTLLHDASRRDWLAYTRQLGISQSNVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 235 GVALANNVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|254472968|ref|ZP_05086366.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211957689|gb|EEA92891.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 301

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 45/259 (17%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +GS T A+E+L++++S++S+ +  LE ++ +KL  R  R L+LT  G + ++  
Sbjct: 9   FVTVVETGSITRASEELNIAKSAVSQNLKRLEEQLDVKLAIRTTRHLSLTPAGERYYQRC 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E+    +  + E++     PSG L I     L   ++   L      +P +Q  +I ++
Sbjct: 69  KEILALSQQAETEMESFGATPSGPLTITAPHALIAPIVAPALASMTQKFPALQPSVIAED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH------------------ 172
           K ++++ +  D AI + + +  S+L  R++ T+H    A+P                   
Sbjct: 129 KRLNLNSEGIDVAISVGQ-LPDSTLQARRIGTLHDILCASPDLLAKAPEADTLAYWEWVQ 187

Query: 173 ---YLKNCREPLSIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227
              Y+ + REP  +    KH L T   GDL+     D ++ +TV            + N+
Sbjct: 188 SLPYIAHTREPAVV----KHQLPTKLNGDLV-----DLSFRSTV------------KANT 226

Query: 228 YLSIMQYCVLGSGIALLPD 246
             +I  +   G GIALLPD
Sbjct: 227 IEAIAAFARNGLGIALLPD 245


>gi|170696407|ref|ZP_02887535.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138668|gb|EDT06868.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 318

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 97/182 (53%), Gaps = 1/182 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +  + SFT AAE L++ +++ +  +  LE  +G +L  R  R +++T +G+  +
Sbjct: 8   MRTFLRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTQLLARTTRRISVTPEGAAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++   ++  +  ++ ++   +G+LRI     +   ++   L +F   YP++ + + 
Sbjct: 68  ERCAQILADIDEMEASIRHATDNLTGRLRIEMPGSVASAIVLPALDDFHARYPNLDLAIG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+ +D+  +  DC+I+L + +  S+L+ R+L T+     A+P YL     P  + +L 
Sbjct: 128 VSNRTVDLVAEGIDCSIQLGE-LPDSNLVARQLGTLEHVTCASPDYLARYGTPTDLDDLR 186

Query: 188 KH 189
            H
Sbjct: 187 GH 188


>gi|254254705|ref|ZP_04948022.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
 gi|124899350|gb|EAY71193.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
          Length = 333

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 8/279 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT 
Sbjct: 32  GYRFELMETFVRIVEAGSLSAAAAQLHTTQPTISRRLQALERSLGMRLLQRTTHAMRLTV 91

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      E+       + +L+ +  +P G LR+A     GQ      L +FL  YP 
Sbjct: 92  DGERCFTRAKELLAHWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVAPLAQFLRDYPR 151

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ +L +   D      DCAI++ +P     ++  +L  +     AAP  L     P 
Sbjct: 152 VSVEWLLQDDVRDFVGSGIDCAIQVGEPTD-PGVVAIRLTKVPRFVVAAPSVLNGADVPA 210

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSG 240
               L     +         +   + +    R I   PRI+    N Y ++    +LG G
Sbjct: 211 DPDALAALPWLALRTYYRTELTLTHAVTGDTRRIAIRPRITT--ANLY-ALRSAALLGVG 267

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
             +   +++ D+     LV +  D       VY  YP A
Sbjct: 268 ACVGSSWMLADHLARGELVHLAPDWQAAPLPVYITYPHA 306


>gi|330807149|ref|YP_004351611.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375257|gb|AEA66607.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 289

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 125/258 (48%), Gaps = 19/258 (7%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
            F  A   L + +S +SR+I+ LE  +G++L +R +R  TLTE G   ++    +  + E
Sbjct: 6   GFAAAGRALDMPKSKLSRRIAQLEDRLGVRLLHRTSRHCTLTEIGQAYYQRCLAMRVEAE 65

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
           +    ++ +  +P G +RI+    L  + +   L  ++L YP +++ +   N+ +D+  +
Sbjct: 66  SAAEVIERNRSEPQGLVRISCPTALLNSWVGPMLTRYMLKYPRVELFIESTNRRVDLIHE 125

Query: 139 YADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
             D A+R+R  P++++ ++ + L         +P YL+    P S  +L+    + +G  
Sbjct: 126 GFDIALRVRFPPLENTDMVMKVLSNSTQCLVGSPAYLERLSSPASPADLNGLPSVHWG-- 183

Query: 198 IPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
                 ++ W   +  P G       EPR   +  +  L++    + G GIA LP  +V+
Sbjct: 184 --AAQREYQW--ELFGPDGTRALIRHEPR---MVTDDLLALRHAVLAGIGIAHLPTVVVR 236

Query: 251 DNPNLVRIMEDVITPSFT 268
           ++    R++E  + P +T
Sbjct: 237 EDIAAGRLVE--LVPGWT 252


>gi|325528494|gb|EGD05615.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 292

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 129/300 (43%), Gaps = 28/300 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR GS + AA++LH++ S++S QI  LE+ +G++LF R    + LT +G  
Sbjct: 9   NPLRAFEAAARRGSVSAAADELHVTASAVSHQIRILESTLGVELFVRSKARVKLTPEGEA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       +  +    ++L   +    G L ++T + L    L  ++ +FL  YP I ++
Sbjct: 69  LLEPVGTAFDMIANATVKLDSPAA--VGDLVVSTPLSLTSRWLARHIGDFLERYPGIHLK 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH--MHAYAAPHYLKNCREPLSI 183
           +I  N D ++     D  IR     + +   QR  +  H  +    +P  +        +
Sbjct: 127 VIPSNDDREVYSPDVDVCIRYG---EGNWRNQRVELLAHPALFPVVSPALMNGPEAIRKV 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           Q+L    L         C    +W+     A  D+    P I  L++ +    ++  V G
Sbjct: 184 QDLAGRTLF--------CEHAGSWMRWLAEANADK---LPGIRILEIGNAHIGVEAAVHG 232

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+AL     V+D   +  LVR     +      Y      L +T  + AF +  +L+AR
Sbjct: 233 QGVALGDSLSVRDDLIDGTLVRPFGATVPSRHAYYLVTRHELSDTPLVTAFTS--WLRAR 290


>gi|310766405|gb|ADP11355.1| AmpR transcriptional regulator [Erwinia sp. Ejp617]
          Length = 298

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 118/264 (44%), Gaps = 28/264 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT A+ +L+++ ++IS+Q+  LE  +  +LF R +RGL LT +G  
Sbjct: 8   NSLRAFEAAARLLSFTKASRELNVTHAAISQQVKALEQHLKCQLFIRISRGLMLTAEGES 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  + +E + ++ +T     +  ++   K+ +  T  +G   L   L +F  L+P I + 
Sbjct: 68  LLPILNESFDRIASTLDRFSDGQMREKMKIGVVGTFAVG--WLLARLADFRRLHPHIDLL 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS--- 182
           L   N  +D   +  D AIR        +               A H+L  C  PLS   
Sbjct: 126 LSTHNNHVDSLAEGLDYAIRYGNGAWHGT---------------ASHFL--CDAPLSPLC 168

Query: 183 -----IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                 Q     NL +F  L     ++++ W +     I  P    +  +S L++++   
Sbjct: 169 CPALGAQLRAPGNLHSFTLLRSYRRDEWSTWFSAAGERIPSPSQHIMMFDSSLTMLEAAQ 228

Query: 237 LGSGIALLPDYIVKDNPNLVRIME 260
            G+GIAL P  +     N  RI++
Sbjct: 229 AGAGIALAPPTMFSHLLNSGRIVQ 252


>gi|270263314|ref|ZP_06191584.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043002|gb|EFA16096.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 305

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 134/293 (45%), Gaps = 18/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A +GSF+ A  +L +S +++ + ++ LET VG++LF R+ R L LTE+G    
Sbjct: 5   LECFVSSAENGSFSAAGRKLGISSAAVGKNVTKLETLVGVRLFQRNTRKLILTEEG---E 61

Query: 68  RVTSEVYHKLETTQIELQE---SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           R   EV   L++ Q  L+    S    +G L+++     G + +   L  FL  YP I  
Sbjct: 62  RFLQEVSGGLQSIQCALKRVNSSGSVAAGTLKVSMGTAFGLHFVMPLLPAFLSRYPSIVP 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+  ++ D AI     + +  +I R+L   H    A+  YL+  R PL  Q
Sbjct: 122 DWHFDNRKVDMIGEHFDAAIGGGIEL-AQGMIARELAPAHGVLVASADYLR--RHPLLSQ 178

Query: 185 --ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             +L  H  I      P+     N  L   D     P ++  + VN   +  +   +G G
Sbjct: 179 PEQLANHAGIFIRS--PQTGRIRNLPLRNADNEQRAPLMTVNMTVNEPEAAARAAEMGLG 236

Query: 241 IAL--LPDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IAL  +P  +   ++  L+R++        +VY  +P       K + F ++I
Sbjct: 237 IALIAMPSALPYLESGRLLRVLPAWYVDRGSVYLYFPTTKFLPSKTRVFVDYI 289


>gi|312882207|ref|ZP_07741955.1| DNA-binding transcriptional regulator DsdC [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309370169|gb|EFP97673.1| DNA-binding transcriptional regulator DsdC [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 312

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 11/195 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AAE+L L+ S+IS +I+ LE E+GIKLF R  R + LTE
Sbjct: 16  SFQLSKLHTFEVAARHCSFSLAAEELSLTPSAISHRINKLEQEIGIKLFDRTHRKILLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G ++++      ++L    ++++   V  SG L +       Q  L   +  F   YP 
Sbjct: 76  EGKRIYQSLKRTLNQLNQEILDVRSGDV--SGSLTVYARPSFAQYWLVPRIGSFKACYPS 133

Query: 122 IQIQLILDNKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           I+++L+  N++I+      D AI     +   +    +    ++ +  + YA  + L N 
Sbjct: 134 IELKLLTGNENINFQGYGIDVAIYFDDHMPDTLLCKEIFSETIIPVCTNEYAEKYCLIN- 192

Query: 178 REPLSIQELDKHNLI 192
               SI+ L++  L+
Sbjct: 193 ----SIENLNRTTLL 203


>gi|300309777|ref|YP_003773869.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300072562|gb|ADJ61961.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 291

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 115/243 (47%), Gaps = 9/243 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L  F +VA  GSF  A+ +   +++++SR+++ LE E+G++L  R  + LT+TE 
Sbjct: 1   MDINALVDFQLVAAHGSFGRASRESGRAKATLSRRVAELEEELGVRLVERGTQRLTVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L + +     +L     + +E S  P G+LRIA  +   Q  L      F   YP +
Sbjct: 61  GELLLQRSEGPLRELAEAMTQAREGSSAPRGRLRIAAPLVFSQLALGRLAASFHAAYPQV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ ++ +++ +D+  ++ D  IR+  P    +L+ R      +   AAP        P+ 
Sbjct: 121 EVDVVAEDRLVDLVQEHFDLCIRI-NPSDDGNLVGRCFARDSLALVAAPTL------PMP 173

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                K + +    ++P   +   W     + +  P+   L+++S + +      G+G A
Sbjct: 174 RARAGKSHPVP-AVVMPTFRDSDLWSLREGKLLIAPQ-PVLRLSSLMMVKDAVCAGAGAA 231

Query: 243 LLP 245
           LLP
Sbjct: 232 LLP 234


>gi|300696584|ref|YP_003747245.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299073308|emb|CBJ52817.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 289

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 8/177 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             WD +R F  +AR GS + AA +L +  ++++R+   LE  +G++LF R  RG  LT +
Sbjct: 1   MQWDDVRYFLALAREGSLSAAARRLGVEHTTVARRADTLEQALGVRLFDRLPRGWRLTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G  L    +E   ++E        ++V      G +R++    L  +++  NL      +
Sbjct: 61  GGAL----AERAGRMEQEAAGFARAAVGAGSLRGTVRVSAPPTLASHIIAPNLATLRRQW 116

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           P I + L+ + ++ ++    AD A+RL +P  +++L  R L  +    YA P  L  
Sbjct: 117 PGIDLVLLGEKRNANLMAHEADLAVRLSRP-SAAALSTRPLGELGYGLYATPELLAR 172


>gi|148826717|ref|YP_001291470.1| LysR family transcriptional regulator [Haemophilus influenzae
           PittEE]
 gi|148716877|gb|ABQ99087.1| putative LysR-family transcriptional regulator [Haemophilus
           influenzae PittEE]
          Length = 223

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 3/214 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L VF  V  +GSF+ AA+QL ++ S++SR +  LE ++G+ L  R  R L LT
Sbjct: 1   MKTTSEELTVFVQVVENGSFSRAAKQLSMANSAVSRVVKRLEEKLGVNLINRTTRQLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++   +   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGLQYFRRVQKILQDMAAAEAEMLAVHEVPQGILRVDSAMPMVLHLLVPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+ L+     I++     D A+R  + +  S L  R L   H    A+P YL     P
Sbjct: 121 HIQLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSHFRVIASPDYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP 214
            S + L  H  + F +  P  +  +  L     P
Sbjct: 180 QSTEALANHQCLGFTE--PSSLNTWEVLDAQGNP 211


>gi|54298381|ref|YP_124750.1| hypothetical protein lpp2445 [Legionella pneumophila str. Paris]
 gi|53752166|emb|CAH13598.1| hypothetical protein lpp2445 [Legionella pneumophila str. Paris]
          Length = 302

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 97/185 (52%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F       SF+ AA++L++S S +S+QI+ LE E+ + L  R    LT+T+ G +L+
Sbjct: 7   LKGFITTVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLIRSTTRLTVTDSGHRLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + +++ +LE  ++      ++ +G +R+  T+      L     +F+  YP I++ +I
Sbjct: 67  EKSLQLFEQLEAVKVIATPDQLELNGVIRLYLTVTPAIPYLTTLSIQFMRQYPKIEVDII 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   ++     D AI     ++   L+ ++L +I    +A+P Y+     P ++ EL 
Sbjct: 127 VGSDTKELYSSTFDLAISFDD-VKHPKLVCKRLFSIQRKVFASPGYIAQHGLPQTLDELP 185

Query: 188 KHNLI 192
           KHN +
Sbjct: 186 KHNCL 190


>gi|13474620|ref|NP_106189.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025374|dbj|BAB51975.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 314

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 124/286 (43%), Gaps = 8/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF    ++GS + AA Q+ LS + + + ++ LE  +G +L  R  R  +LT+ G+  
Sbjct: 6   SMQVFVATVQAGSMSSAAAQVGLSPAMVGQHVAALEERLGTRLLNRTTRRQSLTDFGASY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  ++     E +       G+LR+      G  +L   L+ +  L P++ + +
Sbjct: 66  IEQCRDILDRVAIADREAEALQTGARGQLRVTAPTTFGAEVLVPALRRYRELAPEVTLDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++++D+  +  D A R+   +  + LI R L    M   AAP YL     P    EL
Sbjct: 126 TLTDRNVDLVEEGFDIAFRI-GTLPDNHLIARSLAPYRMMICAAPDYLVRKGMPEHPSEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ F    P     +      D    EP  + + VNS  ++      G G+ + P 
Sbjct: 185 SSHEVVGF---TPAARSPWRMSKGGDVVEVEPAWT-VTVNSGQAVRTAARAGLGVVMQPA 240

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            ++  +     LV++  D       +   Y    + T +L++F +F
Sbjct: 241 ILLSPDVQAGQLVQLFPDWHLRERPMSLLYHRDRRMTPRLRSFISF 286


>gi|322835341|ref|YP_004215367.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170542|gb|ADW76240.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 304

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 137/291 (47%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V  +GSFT  A  L L+++ +S  +  LE+E G+ L  R  R L LTE G + 
Sbjct: 6   RLEIFVAVVNAGSFTGGAVSLGLTKAVVSFNVKQLESETGVALLTRSTRRLALTESGERF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   ++  + E    +++      SG+LRI +T + G  ++   L  F  L+P ++IQ 
Sbjct: 66  YQRCQDLLQEAEAVLDDVRRDHAGLSGQLRITSTPEYGARVVVPALAAFSALHPQLRIQH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +   D+     D AIRL + +  SS     L    +   A+P +L+      +  +L
Sbjct: 126 VASSHHDDLIAGRFDLAIRLGQ-LTDSSHHAAALGRFGILPVASPAFLREHGNITTPDQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RIS---CLQVNSYLSIMQYCVLGSGIA 242
                I    L P  M   +W  T  +    P R++    +  +S  +++ + + G+G+ 
Sbjct: 185 AASRWIAHSRL-PLPM---SWPVTDAQGKQNPFRVTTPPAIVADSASALLAFALAGAGVV 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLPD++V+   D   L  ++     P   ++  YP       K+++F +F+
Sbjct: 241 LLPDWLVQPEIDAQRLCHVLPGHRFPPQGIFALYPNTRHVPEKVRSFIDFL 291


>gi|296389333|ref|ZP_06878808.1| transcriptional regulator PtxR [Pseudomonas aeruginosa PAb1]
          Length = 264

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 10/247 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VA   SFT AAE L LS+S +S Q+  LE ++GI+L  R  R +TLT++G  
Sbjct: 14  NHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGEL 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V   +  +L+    ++++   +PSG+LRI    D  +  +      F+  +P +Q++
Sbjct: 74  LFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVE 133

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ D++  D+     D A+R+  P + S L   KL      A A P YL      L   +
Sbjct: 134 MLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPGYLAGLPPVLQPHD 192

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIA 242
           L +   I    L         W  T +R      +     L  N+ L++ +  + G+G++
Sbjct: 193 LARCEWIGHTRL------STPWTWTFERQRERATVQTRGRLLANNTLAVYRLVLDGAGVS 246

Query: 243 LLPDYIV 249
           +LP ++V
Sbjct: 247 VLPSFLV 253


>gi|242281012|ref|YP_002993141.1| LysR family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242123906|gb|ACS81602.1| transcriptional regulator, LysR family [Desulfovibrio salexigens
           DSM 2638]
          Length = 298

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           VAR  SFT AAE+L++  S++SR+I  LE  +G  LFYR  R + LT+ G  L      +
Sbjct: 18  VARQKSFTKAAEKLNIGASTLSRRIKQLEERMGAVLFYRDTRNVELTDNGQILLDRCEFI 77

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
             + + T   +  +   PSG +R+    DL    ++  L  F   Y DI+++L      +
Sbjct: 78  LGETQRTYESVVNNMKSPSGLVRVCMFRDLYDRNMKKALIGFADKYTDIRLELTFVEHPV 137

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL 191
           D+  +  D A  L  P  +  LI RKL+ I    YA+P      R P+     D HN+
Sbjct: 138 DLRTEPYDAAF-LIGPSIAPPLIARKLLRIEPFIYASPELFD--RYPMPEMPEDLHNI 192


>gi|218680986|ref|ZP_03528883.1| transcriptional regulator, LysR family protein [Rhizobium etli CIAT
           894]
          Length = 208

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 2/142 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR+GS T AA +L L+QS++SRQ+S LE ++G++LF R  + + LT  G    
Sbjct: 16  LAAFEAVARTGSVTAAARELDLTQSAVSRQVSALEEQLGVELFLRERQTMRLTLAGDSYA 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E   ++ +  + L+ +     G L +A     G   L   L  FL + P + I L+
Sbjct: 76  REIREALRRISSASLNLRAN--PHGGTLNLAILPTFGTRWLAPRLGRFLAVNPGVTINLV 133

Query: 128 LDNKDIDISMDYADCAIRLRKP 149
                 D  +D  D AI    P
Sbjct: 134 TRLSPFDFRLDSIDAAIHFGHP 155


>gi|190572582|ref|YP_001970427.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190010504|emb|CAQ44113.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 299

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 21/294 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F   A + SF        +S S+  + ++ LE  +G++LF+R  R +TLT +G   
Sbjct: 9   NLQTFVHAADTRSFVETGRLQGISASAAGKCVARLEQALGVRLFHRSTRSITLTAEGQLF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  + +  + EL +    P G LRI   + L  +L    + EF+  YPDI++ L
Sbjct: 69  LARCRRILDERDAARTELAQPHATPRGTLRIG--LPLVGDLTLPLMAEFMAAYPDIRLDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  D  +R+ +P   S +  R+L        A+P YL+    P +  +L
Sbjct: 127 DFSDRLVDVIEEGFDAVLRVGEP-SDSRMNARRLGVFPRRIVASPAYLQRRGTPRTPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-------VNSYLSIMQYCVLGS 239
            +H L+ +    P   +   W      PI  P     Q        N+  + +   +   
Sbjct: 186 LQHTLLHYR--FPSTGKLELW------PIHWPDHETPQELPVHMVANTIEARVALALRDI 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A +P + V+D   +  LV ++++ +      +  +P       KL+ F +F+
Sbjct: 238 GLAFVPVHSVRDALADGRLVTVLDEHVHSCGIFHLLWPSGRHVLPKLRVFIDFV 291


>gi|87122737|ref|ZP_01078611.1| putative LysR type regulator [Marinomonas sp. MED121]
 gi|86161965|gb|EAQ63256.1| putative LysR type regulator [Marinomonas sp. MED121]
          Length = 317

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 8/242 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   AR  S   AAE+L+L+  +IS QI  LE  +  KLF R  R + LTE GS+ +
Sbjct: 26  LKGFEATARLASVRGAAEELNLTHPAISHQIQTLEESLACKLFIREGRQIRLTEAGSRYY 85

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +  + L     E++++  +P+  LR+ T +      L   L +F   +PDI +Q+ 
Sbjct: 86  QFVRQALNILIAGTEEVRDNISQPA--LRVQTYVTTSIRWLAPRLNKFRQQHPDIGLQVS 143

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             + D      +AD AI  +    S  L  +      +    +P +L    + L   +L 
Sbjct: 144 TYSADWRFDEKHADIAIIYKTQPLSDHLSWQPFFQSKVFPVCSPEFLAKLPDQLETHDLK 203

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRIS--CLQVNSYLSIMQYCVLGSGIA 242
            + LI+      K     NW  +     +P  + + S  C+ V++  + ++  ++G GIA
Sbjct: 204 NYPLISVY-TENKYWSWQNWFESAGINHKPDDKTQTSLNCMDVDTLAAALEMAIIGEGIA 262

Query: 243 LL 244
           L+
Sbjct: 263 LV 264


>gi|170697354|ref|ZP_02888446.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137685|gb|EDT05921.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 304

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 125/295 (42%), Gaps = 25/295 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GS + AA  L + QS++S ++  LE  +G+ L +RHAR L  T+ G    
Sbjct: 10  MRVFVRVVECGSISEAARGLGMGQSTVSERLDRLERHLGLPLLFRHARRLACTDDG---- 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPS-------GKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               +V+++   T IEL E ++          G  ++A     G+ +L G + E    YP
Sbjct: 66  ----QVFYERSKTAIELTEIALGVGRERHDVRGIFKLAAPQAFGEIVLPGIVVEIRKQYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L L++  +D +    D ++RL +P   +      L  +H    A+P YL      
Sbjct: 122 ELSVELFLEDAVVDPATAGVDLSLRLERP-GGAPPDSYYLGHVHRTLVASPAYLGQHAPI 180

Query: 181 LSIQELDKHNLI-TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                L  H  I   G    + +E      A V  PI         VN +    +  + G
Sbjct: 181 SEPSALTDHPFIRARGIYNARAIELIGADSAMVQVPIN----VAFSVNHWRPAREQLIAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI +L   +  +   +  L RI+ +   P   +Y   P A     K +A  + I
Sbjct: 237 FGIGILEPRVCAEAIADGRLQRILPEYNVPGLDLYAVLPVARPTPPKTRAILSII 291


>gi|194016300|ref|ZP_03054914.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
 gi|194011773|gb|EDW21341.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
          Length = 295

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 116/262 (44%), Gaps = 21/262 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT A++ L++SQ +IS+ +  LE E+G++LFYR+ R + +T+ G  ++
Sbjct: 6   LTYFLEVARLKSFTKASQSLYVSQPTISKMVKNLEDELGVQLFYRNGRQVEMTDAGQTMY 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              SE+    +    EL +      G +RI     +G +     + EF   YPD+  QL+
Sbjct: 66  TQASEITQSFQNLTSELNDLMNVKKGHIRIGLPPMIGSSFFPNVMGEFRQQYPDVTFQLV 125

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++  I +     D ++ +     P          ++   M     P +    R+ + + 
Sbjct: 126 -EHGSIKVEEGVEDGSLDIGVIVLPANDKIFHTYTIIKEDMKLVTHPSHPMAGRDKVDLA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS----- 239
           +L + + I F        EDF       R + E   +  + N      Q+  +       
Sbjct: 185 DLKEESFIFF-------REDF---VLHSRILNECMNAGFRPNVIYETSQWDFISEMVAEN 234

Query: 240 -GIALLPDYIVKD-NPNLVRIM 259
            GI LLP+ I +D +P  V+++
Sbjct: 235 LGIGLLPERICRDLDPEKVKVI 256


>gi|17546191|ref|NP_519593.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428487|emb|CAD15174.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 318

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 9/287 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AA++L L +SS+S  +S LE ++G +LF R  R L LT+ G
Sbjct: 5   DWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGARLFERSTRRLRLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +         + E +  +  ++
Sbjct: 65  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAARQFAEVVLEVMREHAGLR 124

Query: 124 IQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ +  + +D +S  Y       R+P+  S L+ +++  +      AP  L     PL+
Sbjct: 125 IEVDVAPRQVDPLSQGYDIMLTVPREPLPDSGLVAQRVFDLRRAVVVAPALLDRL-GPLN 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 + LI +  L      ++ + A     +  P    ++ ++    +Q  V G G+A
Sbjct: 184 ----HPNQLIDWPCLGLSSESEWQFRAPGGETLNLPLDFRMRTSNSELRLQAAVAGLGVA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +     ++      L  ++    +P   VY  +P       K+K F
Sbjct: 240 RITSAFAEELIAAGALREVLAGFRSPPMRVYAVFPGRRLMPAKVKVF 286


>gi|148547922|ref|YP_001268024.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511980|gb|ABQ78840.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 293

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 127/281 (45%), Gaps = 21/281 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD LR+   V+R GSF  A + L ++ S++SR+++ LE  VG  L  R   G  LT +G
Sbjct: 6   NWDDLRLLLAVSRRGSFLQAGQLLGIAASTLSRRLTQLEVAVGEPLVERGVEGCRLTSRG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             L  V       L   +  L  +S +P   SG + ++        +L+  ++ F  L+P
Sbjct: 66  QSLVEVAIAAESGLR--RQTLSGTSQQPTELSGSVLVSAGEGFSDYVLEA-IRRFTSLHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              ++L +      I+   AD A+R    +   SLI R +  +    +AAP YLK     
Sbjct: 123 RCSVELTVAADFHKIARGVADVAVRTAH-LGEPSLIYRPIGRLAYGIFAAPGYLKQF-PG 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++      +L+   D++P+        A +DR       + + VNS+   +Q    G G
Sbjct: 181 VTLTTAVSVSLLPPLDILPQMRA--AKAAGLDR-------AQISVNSFAVQLQSVKRGMG 231

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY-PEALKNT 280
           +A+LP     D   LV +   +  P   +Y    P+ALK  
Sbjct: 232 VAVLPRIAATD---LVELFPHLPLPDMEIYLVTRPQALKQA 269


>gi|242240570|ref|YP_002988751.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242132627|gb|ACS86929.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 304

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 126/291 (43%), Gaps = 20/291 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +A  GS T  A +  LS  ++S++++ LE  +G++L  R  R L LT +G  
Sbjct: 5   DDLLFFSRIAALGSLTAVAREQGLSLPAVSKRLTQLEQRLGVQLIRRTTRRLDLTSEGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  + +++E  +  ++ + +   G+L I  +   G+  +   +  F L +PD+ IQ
Sbjct: 65  YAAGALPILNEIEALEGVVRRNQLALRGRLTINASFGFGRRYIAPLISSFSLQHPDLDIQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +++     D  IR  +P   S L+  +L+       AAP YL     PL++ +
Sbjct: 125 LQLTSQPLNMPDSAVDIDIRFGEP-PDSRLVAHRLMKNPRVLCAAPAYLARAGIPLNVTD 183

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVD------RPIGEPRISCLQVNSYLSIMQYCVLG 238
           L  HN +    ++ +   D+  W    D      R  G      L  N    IM+Y   G
Sbjct: 184 LANHNCL----ILRQYESDYGLWRFYRDGQEYTHRAFGN-----LSSNDGEVIMRYARDG 234

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GI L   + V        LV ++ +   P   VY  Y        ++ AF
Sbjct: 235 HGIILRSHWDVSPWLARGELVGLLTEYTIPGADVYAVYQHRRHVPARITAF 285


>gi|239817938|ref|YP_002946848.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804515|gb|ACS21582.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 305

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 91/186 (48%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     +  F     +GSF  AAE+LH+++S++++ I  LE  +G +LF R  R  +LT
Sbjct: 1   MSPRLQGIEEFVAAVEAGSFARAAERLHVTRSAVAKSIGRLEARLGTRLFLRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   +     V  +L+  +     +    +G +R++    LG+  +   L      +P
Sbjct: 61  EEGHGYYERCRRVLAELDAAEAMADAARSTAAGLVRLSMPAMLGRLKVGPLLLALARRHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L  +++ +D+  D  D AIR  +   S+ L+ R +    M   AAP YL     P
Sbjct: 121 GLSLELSFNDRRVDLVEDGLDLAIRSGELADSAELVARPVGVQWMALCAAPAYLAERGRP 180

Query: 181 LSIQEL 186
            S+ EL
Sbjct: 181 GSVAEL 186


>gi|209546445|ref|YP_002278335.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539302|gb|ACI59235.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 294

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 19/253 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG---- 63
           + +F  V  +GSF  AA    +S + +++ I  +ET +G KL +R  R   LTE G    
Sbjct: 7   MAMFVRVIDNGSFAAAAGIAQVSPAMVAKHIKTIETRLGAKLIHRTTRRHQLTEVGQLYY 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R  SEV    E +  ELQ +   P G+LR+   +  G  +L   L ++   YPD+ 
Sbjct: 67  ERCKRALSEVALA-EASASELQSA---PRGRLRLVAPVSFGTQILVPALVDYQNAYPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L LDN   D+  +  +  I +  P+   SL+ R L        A+P YL     P S 
Sbjct: 123 IELSLDNNVHDLVGEGFELGIHI-GPLSDDSLVARPLTPYRRILAASPDYLARHGRPASP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR---ISC-LQVNSYLSIMQYCVLGS 239
           + L  H  +  G    +  + ++ +     P GE R   IS     N   ++    + G+
Sbjct: 182 EALTNH--LCLGHSYWRMQDRWHLVG----PGGEMRDVLISGKFSTNQGAALRMAAISGA 235

Query: 240 GIALLPDYIVKDN 252
           GI L P+ ++  +
Sbjct: 236 GIVLQPELLLAAD 248


>gi|192293534|ref|YP_001994139.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192287283|gb|ACF03664.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 300

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 129/280 (46%), Gaps = 19/280 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +L  F  VA  GSF+ AA  L ++Q ++SRQ+ GLETE+  +LF R+ RG+ LTE 
Sbjct: 1   MNLKQLEYFMHVAELGSFSKAAMVLDVAQPALSRQVRGLETELRQQLFLRNGRGVALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L   +  +   +   + +L  S   P G++ I     + + L    +  F    P  
Sbjct: 61  GRRLFDHSVAIMQMVAHAREDLGASRDAPVGRVTIGLPPSIARQLTLPLIDHFKRTLPSA 120

Query: 123 QIQLI--LDNKDID-ISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           ++ ++  L +  I+ ++   AD  +      +  I+ + L+Q  L  +   +YA P   +
Sbjct: 121 RLAIVEGLSSHIIEWVTTGRADVGLVYNPDAQPGIEITPLLQEPLGLV---SYAPPSKRR 177

Query: 176 NCREPLSIQELDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
               PL  +EL K+ LI    +  + + +E+   LA V   I        +V+S  SI++
Sbjct: 178 GAAAPLPFKELSKYPLIVPERVHAMRRLLENEAALAGVKLDI------AWEVSSVPSIIE 231

Query: 234 YCVLGSGIALLPDYIVKDNPNLVR-IMEDVITPSFTVYFC 272
               G G A+L    V  +P     +M  +I P+     C
Sbjct: 232 LVCAGYGHAVLTRSGVAASPRAAELVMRPLIQPAPASALC 271


>gi|156973398|ref|YP_001444305.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156524992|gb|ABU70078.1| hypothetical protein VIBHAR_01086 [Vibrio harveyi ATCC BAA-1116]
          Length = 306

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 27/215 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA   SFT AA+ LHL+  +IS+QI  LE ++G  LF RH+RG+ LT +G +L 
Sbjct: 9   LWLFSQVAEHSSFTSAAKALHLTIGAISQQIIQLEEQLGFTLFERHSRGIRLTPKGLQLS 68

Query: 68  RVT----SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +    +E+   LE  QIE      KP  ++R+  T       L   L+ F L  PD+Q
Sbjct: 69  QSSQFHFTEIGKTLEELQIE------KPHNEIRLKLTPSFAFKWLVPRLESFHLENPDLQ 122

Query: 124 IQLILDN-------KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH-YLK 175
           +Q+  +        KD D+++DY     R +    +  ++  +L+ +    Y   H +LK
Sbjct: 123 VQIFAEGALVNSELKDYDVAIDYGSHPYRDKS---AERILDEQLLPVMSPKYLEDHGWLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIP--KCMEDFNWL 208
             +   S ++     L+   D +P  K   D+ WL
Sbjct: 180 TLK--ASPEKWRDATLLH--DAMPWDKAPRDYEWL 210


>gi|77462575|ref|YP_352079.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77386993|gb|ABA78178.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
          Length = 296

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 21/190 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG---- 63
           L     +AR GSF  AA  L +S +++S  ++ LE  +G++LF+R  R + LTE G    
Sbjct: 8   LEAVLAIARKGSFRAAALDLGVSTTALSHTVARLEAGLGVRLFHRTTRSVALTEAGREFV 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +++    +E+   LET    ++     PSG LRI  ++  G+ +    L  FL  YP+++
Sbjct: 68  ARIAPALTEIRAALET----VRSQRATPSGMLRINASVQAGRAVAPLVLA-FLRRYPEMR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-----HA-YAAPHYLKNC 177
           + L+ + + +DI  +  D  IR       + L+ R ++ + +     HA  A+P +L   
Sbjct: 123 VDLVTEGRLLDIVAEGFDMGIR------PADLVPRDMIALPLGLPVRHAVVASPDWLVRH 176

Query: 178 REPLSIQELD 187
            EP S  +LD
Sbjct: 177 PEPRSPADLD 186


>gi|209519898|ref|ZP_03268680.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499658|gb|EDZ99731.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 307

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 11/239 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF  AA++L ++QS++S QI  LE ++G+ LF R  R + LT+QG   +
Sbjct: 13  LRAFEAAARHLSFGRAAQELFVTQSAVSHQIQKLEADLGVALFERRTRAIELTDQGRAYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  L     E++  S + +  L +          L   L  F L +PDI++QL 
Sbjct: 73  AKVHAAFELLRLGTSEVRAFSTERT-MLSVGLLSSFASRWLASRLHTFPLTHPDIELQLR 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+     D AIR  +      +  +KL++  +    +P  +   + P   Q+L 
Sbjct: 132 PDIALADVPGGEVDVAIRYGRG-GWPGVASQKLMSERLSPVCSPSLITGKKRPRKPQDL- 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP---IGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
              L+ F  L     + F W A        +GE +   +Q++ Y  +++  + G G+A+
Sbjct: 190 ---LLRFPLLTSYSTQPFEWEAWAHHAGVILGEAQ--RVQLHDYNIVVEAALAGQGVAM 243


>gi|187923681|ref|YP_001895323.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714875|gb|ACD16099.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 340

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 118/249 (47%), Gaps = 10/249 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF+ AAE L+++  S+S+ I+ LE  +  ++  R  R ++LTE     +
Sbjct: 7   LRAFVAAARYQSFSKAAESLNVTTGSVSKAIAKLEGCIQTRVLLRTTRSVSLTEAAQPYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +L+     +  S    SGKLR+     L        ++ +  + P++ + + 
Sbjct: 67  QSCCRLLEELDEANRRITRSREVDSGKLRLIVHPMLMSETFSRLVRGYHAIAPNVNLIVS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +     ++     D AI     ++ S++I+R L        AAP YL+    PL+  EL+
Sbjct: 127 VQEGAANLYDGRFDMAILPPHLVEQSAVIRRTLSKSQRIFVAAPAYLEQYGVPLTAAELN 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY----LSIMQYCVLGSGIAL 243
            H L+   D   K ++  + L       GE R+S   ++S     + +    V+G+GIA 
Sbjct: 187 HHFLLLDTDSRKKGVDVVDLLE------GETRVSVSPMSSMDGNEILLRAAAVIGTGIAA 240

Query: 244 LPDYIVKDN 252
           LP+ +V+++
Sbjct: 241 LPETMVRED 249


>gi|86355925|ref|YP_467817.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280027|gb|ABC89090.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 302

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 132/307 (42%), Gaps = 47/307 (15%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   V+   SF  AA +L ++ S+IS  IS LE  +G++L  R  R +  TE+G  L
Sbjct: 8   QLAVLAAVSEHRSFRAAARELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGRLL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    +++     ++++  KP+G LRI         LL   L +FL LYPDI +++
Sbjct: 68  LERLRPALEEIDVALEAVRDTRGKPAGNLRITAPRFASDILLAPRLGDFLNLYPDITLEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQR---KLVTIHMHAYAAPHYLKNCREPLSI 183
             ++   DI  +  D  IRL + +++  +  R   KL T+     A+P Y +   +P   
Sbjct: 128 ANEDGFTDIVREGFDAGIRLEESLEADMIAVRISPKLTTV---IAASPDYFERYPKPEHP 184

Query: 184 QELDKHNLI----TFGDLIPKCMEDFNW---------LATVDRP--IGEPR-----ISCL 223
           ++L  H  I    T G +       + W         +  VD P  + E R         
Sbjct: 185 RDLVHHRCIKRRFTNGSI-------YRWEFEKDGQELIVAVDGPLVVSEDRLALLAALNG 237

Query: 224 QVNSYLSIMQ-YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
              +YL  M+ +  L +G              LVR++ED   P    +  YP   +    
Sbjct: 238 AGLAYLFDMRVHAELAAG-------------RLVRVLEDWCAPYPGPFVYYPSRRQMRPA 284

Query: 283 LKAFRNF 289
           L+AF +F
Sbjct: 285 LRAFIDF 291


>gi|39937753|ref|NP_950029.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39651613|emb|CAE30135.1| transcriptional regulator ligR, LysR family [Rhodopseudomonas
           palustris CGA009]
          Length = 300

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 129/280 (46%), Gaps = 19/280 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +L  F  VA  GSF+ AA  L ++Q ++SRQ+ GLETE+  +LF R+ RG+ LTE 
Sbjct: 1   MNLKQLEYFMHVAELGSFSKAAMVLDVAQPALSRQVRGLETELRQQLFLRNGRGVALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L   +  +   +   + +L  S   P G++ I     + + L    +  F    P  
Sbjct: 61  GRRLFDHSVAIMQMVAHAREDLGASRDAPVGRVTIGLPPSIARQLTLPLIDHFKRTLPSA 120

Query: 123 QIQLI--LDNKDID-ISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           ++ ++  L +  I+ ++   AD  +      +  I+ + L+Q  L  +   +YA P   +
Sbjct: 121 RLAIVEGLSSHIIEWVTTGRADVGLVYNPDAQPGIEITPLLQEPLGLV---SYAPPSKRR 177

Query: 176 NCREPLSIQELDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
               PL  +EL K+ LI    +  + + +E+   LA V   I        +V+S  SI++
Sbjct: 178 GAAAPLPFKELSKYPLIVPERVHAMRRLLENEAALAGVKLDI------AWEVSSVPSIIE 231

Query: 234 YCVLGSGIALLPDYIVKDNPNLVR-IMEDVITPSFTVYFC 272
               G G A+L    V  +P     +M  +I P+     C
Sbjct: 232 LVCAGYGHAVLTRSGVAASPRAAELVMRPLIEPAPASALC 271


>gi|332297116|ref|YP_004439038.1| transcriptional regulator, LysR family [Treponema brennaborense DSM
           12168]
 gi|332180219|gb|AEE15907.1| transcriptional regulator, LysR family [Treponema brennaborense DSM
           12168]
          Length = 289

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 132/286 (46%), Gaps = 21/286 (7%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +  K + F      GSFT AA  L+ SQS++SR I  LE E  + L  R  +G+ LT 
Sbjct: 3   SMNLQKYKTFIKTVECGSFTKAAGLLNYSQSAVSRMIDDLEKEWQVSLLERSRKGVKLTS 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G KL     +V  + +  Q  + E +   SG +RI T   +  + L   +K+F   YP+
Sbjct: 63  DGMKLLPYARKVCDEYDNLQAAIDEVTGLQSGLIRIGTFSSVATHRLPRIIKKFRKDYPN 122

Query: 122 IQIQLILDN---KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I+ +L+L +    +  I     DC   L        +I  +   + +    A H L NCR
Sbjct: 123 IEYELLLGDYYETESWIMDGRVDCGFLLEPTATDFEVISLETDRL-LAVLPAKHPLANCR 181

Query: 179 E-PLSIQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           + P+     D   L+  G    KC + DF     +++    P+IS    + Y +IM    
Sbjct: 182 KFPVKALCDDPFLLLEKGG---KCEVRDF-----LEKNGISPKISFTTWDDY-AIMAMVE 232

Query: 237 LGSGIALLPDYIVKDNP-NLVRIMEDVITPSFTVYFCYPEALKNTG 281
              GI++LP+ I++ NP N+V    D+  P+F    C+  A +N G
Sbjct: 233 NDFGISILPELILERNPYNIVTKELDI--PAFR-KICF--AFRNNG 273


>gi|307544172|ref|YP_003896651.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307216196|emb|CBV41466.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 298

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 114/252 (45%), Gaps = 16/252 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA +L  +QS+IS+QI  LE ++G++LF R  RG+ LTE G  
Sbjct: 11  NSLRVFESAARHLSFTAAARELRSTQSAISQQIRALEEQLGLRLFDRVYRGVRLTEPGQS 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E +  +E T  +LQ+    P  +L I T   L    L   L  F   +P I ++
Sbjct: 71  LFASVREGFSLMEKTIEQLQQRHRNP--RLNILTDFSLASYWLMPRLPAFRRDHPHIDVR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQR-KLVTIHMHAYAAPHYLK---NCREPL 181
           ++ +   +D     AD AI       + +L  R +L    +    +P +L+      +P 
Sbjct: 129 IMTNQGGVDWRGQEADVAIAF---CDARTLEDRPRLFHEDVFPVCSPGFLEMHGAIEDPT 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVLGS 239
            + EL    L        +     +W +  +R  G      S L  N+Y  ++Q  + G 
Sbjct: 186 RLAELPLLTLTA-----DQGQGWLDWPSYFERLAGMAYGESSELIFNNYTLLIQAAIAGQ 240

Query: 240 GIALLPDYIVKD 251
           G+ L    +V D
Sbjct: 241 GVGLGWKGLVDD 252


>gi|262038465|ref|ZP_06011839.1| transcriptional regulator, LysR family [Leptotrichia goodfellowii
           F0264]
 gi|261747560|gb|EEY35025.1| transcriptional regulator, LysR family [Leptotrichia goodfellowii
           F0264]
          Length = 298

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 128/254 (50%), Gaps = 24/254 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L++FY  +   SFT AA++L++SQS++S QI  LE  +G++L  R+++   LT  G
Sbjct: 2   DIHHLKIFYEASNEKSFTKAAKKLYISQSAVSIQIKKLEHTLGLQLIERNSKNFKLTFAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R++ +++ K+   + E+++      GK+ I  T ++G+ +L G + EF    P+I+
Sbjct: 62  KELFRMSRDIFEKISRMENEMRKILQYKKGKISIGATHNIGEPVLPGIMIEFRKNNPEIE 121

Query: 124 IQLILDNKDIDIS-MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY----AAPHYLKNCR 178
             L + NK+  I  +      I L   ++   +  +++  I    Y     +   +++ R
Sbjct: 122 FDLYIKNKESLIKHLKEGTVDIAL---MEEYFIEDKEIKVIETEEYPFVVVSGTEVRDYR 178

Query: 179 EPLSIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           E + I  L +  ++T  + DL  K +  FN          + RIS   +N  +  M+  +
Sbjct: 179 ELIDIPLLKRDTMLTNKYLDLFEKII-GFNL---------DKRIS---INGSIETMKNLI 225

Query: 237 L-GSGIALLPDYIV 249
             G G A+LP Y V
Sbjct: 226 KNGLGFAVLPYYSV 239


>gi|146340324|ref|YP_001205372.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146193130|emb|CAL77141.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 347

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 128/285 (44%), Gaps = 9/285 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++  W+ LR F +  R  SF +AAE L L+ +++ R+I  LE E+G KLF R   GL+L+
Sbjct: 21  LNASWEDLRAFLLCTRHQSFRNAAEVLGLTGTTLMRKIDRLEYELGCKLFIRDQTGLSLS 80

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L     E   +L          S    G +R+A T   G   +   L +F   Y 
Sbjct: 81  DEGRAL-LFDVEQMERLSFNIFRRAALSTDTRGSVRVAVTEGPGNFWILPRLIDFQRTYR 139

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + L    +  D+S   AD +I+  +P     ++  KL  +H++ + +  Y      P
Sbjct: 140 KITVDLSCAMQQADVSRLEADISIQFERPTNPDVIVS-KLGRLHIYGFVSEAYRDAHGLP 198

Query: 181 LSIQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            S+ +L  H +I   G  + +    +  +  +D   G   I  +  NS ++++      +
Sbjct: 199 SSLADLRNHRIIKQHGVQLDET--GYARILGLDSLEG---IVGISTNSSVAVLYAVERSA 253

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           GI  LP  +V     LV + +  +     ++  Y +  +N+ + K
Sbjct: 254 GIGFLPTSVVALGAPLVPV-DLGVNYHMDLWLTYHKEFRNSDRHK 297


>gi|186477177|ref|YP_001858647.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184193636|gb|ACC71601.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 329

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 130/302 (43%), Gaps = 30/302 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA + SF  AA+QL +S + ++R I+ LE  +  +L  R  R L+LTE G+   
Sbjct: 7   MRVFVRVAETQSFRRAAQQLKVSNALVTRSIATLEAHLHARLINRTTRNLSLTEAGTHYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+  +  +  +  +P G LR+  T  L    L   L  +   YP ++I+L 
Sbjct: 67  EGCRGLLEELDHLEGSVAGTEREPGGTLRVVATGSLSPQALTHLLDGYRRHYPKVRIRLT 126

Query: 128 L---------DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L         D  D+ + +     A      I S   I+    T  + A AAP YL    
Sbjct: 127 LAERMPHLLEDGYDVGLFIASPAPAPGAAAEIDS---IELSFATQRLVACAAPSYLAAHE 183

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIG-EPRISCLQVNSYLSIM 232
           EP   +++  H+ I      P           +D     +P+  EP  +   VNS L + 
Sbjct: 184 EPRRPEQMALHSCIA----TPSEQRGPTVWHFIDSDGDAQPVTLEPSYT---VNSPLLVR 236

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFR 287
              + G GIA+LP+ +V D+     L RIM+   V      V   YP       K +AF 
Sbjct: 237 LAAIAGMGIAVLPESLVADDFATGALKRIMQGYTVDESQAKVSLVYPRRRHLPAKTRAFV 296

Query: 288 NF 289
           ++
Sbjct: 297 DY 298


>gi|53717048|ref|YP_105843.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53722036|ref|YP_111021.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|67640318|ref|ZP_00439129.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121598077|ref|YP_989772.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124381144|ref|YP_001024257.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126443084|ref|YP_001062485.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126446301|ref|YP_001078330.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126458078|ref|YP_001075438.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134283396|ref|ZP_01770096.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167003522|ref|ZP_02269308.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167723479|ref|ZP_02406715.1| transcriptional regulator [Burkholderia pseudomallei DM98]
 gi|167742438|ref|ZP_02415212.1| transcriptional regulator [Burkholderia pseudomallei 14]
 gi|167819603|ref|ZP_02451283.1| transcriptional regulator [Burkholderia pseudomallei 91]
 gi|167827986|ref|ZP_02459457.1| transcriptional regulator [Burkholderia pseudomallei 9]
 gi|167849444|ref|ZP_02474952.1| transcriptional regulator [Burkholderia pseudomallei B7210]
 gi|167898048|ref|ZP_02485450.1| transcriptional regulator [Burkholderia pseudomallei 7894]
 gi|167906381|ref|ZP_02493586.1| transcriptional regulator [Burkholderia pseudomallei NCTC 13177]
 gi|167914712|ref|ZP_02501803.1| transcriptional regulator [Burkholderia pseudomallei 112]
 gi|167922606|ref|ZP_02509697.1| transcriptional regulator [Burkholderia pseudomallei BCC215]
 gi|217418780|ref|ZP_03450287.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226195288|ref|ZP_03790878.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237509871|ref|ZP_04522586.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242313297|ref|ZP_04812314.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254174479|ref|ZP_04881141.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254183501|ref|ZP_04890093.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254190127|ref|ZP_04896636.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254192882|ref|ZP_04899317.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254200655|ref|ZP_04907020.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254264366|ref|ZP_04955231.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254300398|ref|ZP_04967844.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52212450|emb|CAH38476.1| putative LysR family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|52423018|gb|AAU46588.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|121225875|gb|ABM49406.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124289164|gb|ABM98433.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126222575|gb|ABN86080.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126231846|gb|ABN95259.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126239155|gb|ABO02267.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134245145|gb|EBA45239.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147748267|gb|EDK55342.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|157810215|gb|EDO87385.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157937804|gb|EDO93474.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160695525|gb|EDP85495.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169649636|gb|EDS82329.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184214034|gb|EDU11077.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217398084|gb|EEC38099.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225932661|gb|EEH28658.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002076|gb|EEP51500.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238521015|gb|EEP84470.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242136536|gb|EES22939.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243060963|gb|EES43149.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254215368|gb|EET04753.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 323

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   DNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  +
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPTTPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSG 240
           L KH  +          E   W   ++R  G+  +  L     Q N   ++      G G
Sbjct: 185 LAKHVCLRLDTPASPGGE---W--RLERDDGDETVYALPPAPFQANVPDALSVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F
Sbjct: 240 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTF 288


>gi|172062604|ref|YP_001810255.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995121|gb|ACB66039.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 312

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 135/311 (43%), Gaps = 40/311 (12%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+ G
Sbjct: 8   NLNRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    E+    +   +    G LR++  ID G  ++   +      +P + 
Sbjct: 68  RAFYDACRDIVRATESALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAIVALRDAHPGLD 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS----SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++LI +++ +D+  D  D AIRL +   S+     L Q +   +   A+ A H L   R+
Sbjct: 128 VELIANDRVVDLVADNLDVAIRLGRLADSNHRAVQLGQYEKWVVASPAFVARHGLP--RD 185

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP---------IGEPRISC---LQVNS 227
           P ++  L                  F  L+T  RP          G   + C   +  N+
Sbjct: 186 PDALAAL-----------------PFVMLSTPSRPHTLELDDTSGGHASVRCTAPVVSNT 228

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
             +     + G G   L D+   ++     LVR++    +    ++  YP     + K++
Sbjct: 229 ATACRAIALAGGGFGFLTDFSTAEDIAAGRLVRLLPAWRSARAGIHAVYPSTRLPSQKVR 288

Query: 285 AFRNFIFLKAR 295
           AF +   +KAR
Sbjct: 289 AFID--AMKAR 297


>gi|146307232|ref|YP_001187697.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575433|gb|ABP84965.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 300

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 12/185 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  +A+  S + AA  L LS S++S  +  LET +G++LF R  R + LTE G +L+
Sbjct: 9   LSIFLSIAQHLSLSRAAIDLGLSPSALSHALRTLETRLGVRLFNRTTRSVALTEAGERLY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  ++    +L     KPSG LRI       Q +L   + +FL  YPD+++ ++
Sbjct: 69  SRVRPAFRDIDDALEDLNNFRDKPSGNLRITAGRPAAQLVLLPMVSKFLQAYPDVRVDIV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY------AAPHYLKNCREPL 181
            D+  +D+     D  +R  + +++       +V++ +  Y       +P +L+    P 
Sbjct: 129 TDDALVDVVSAGFDAGVRFGERLEA------DMVSLAIGPYMRSVVVGSPEFLRQYPTPQ 182

Query: 182 SIQEL 186
             Q+L
Sbjct: 183 KPQDL 187


>gi|94498460|ref|ZP_01305017.1| probable transcriptional regulator protein, LysR family protein
           [Sphingomonas sp. SKA58]
 gi|94422108|gb|EAT07152.1| probable transcriptional regulator protein, LysR family protein
           [Sphingomonas sp. SKA58]
          Length = 307

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 9/243 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   G    A  +LH+S + +S++++ LE  +G KL +R  R + LT  G +LH  
Sbjct: 8   LFVTVVDEGGLAAAGRRLHISPAMVSKRLARLEDRLGAKLLHRTTRRMALTPAGERLHAD 67

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L+  +  +   S   SG LR+      G+  L   L+ FL  YP + + + L 
Sbjct: 68  LRGILAALDEAERRVSGQSAMVSGPLRVTAPTSFGRMHLAPYLQGFLDAYPKVALTIDLS 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   D+    AD A+R+        L   +L T      AAP YL     P +I  +  H
Sbjct: 128 DAFADLIEARADLALRITA-NPGRGLSATRLATNRRILCAAPGYLDRHGVPDTIAAIKAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
            L+     +P       W     R P+     S ++ NS   + +  + G GIAL   + 
Sbjct: 187 RLLAADGQMP-------WRLVGPRGPVSIEGQSHVRTNSSELVRELTLAGGGIALRSLWD 239

Query: 249 VKD 251
           V D
Sbjct: 240 VSD 242


>gi|307546485|ref|YP_003898964.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218509|emb|CBV43779.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 290

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 22/288 (7%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSFT AA  L   ++++S  +  LE  +G++L +R  R + LT  G +  +    +  + 
Sbjct: 2   GSFTRAAVALAWPRATVSLAVRRLEETLGVRLLHRTTRKVRLTPDGERFLQRARTLVAEA 61

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E  +   ++ S + +G+L +     + + L+   L + L  +P +Q+ L   ++ +D+  
Sbjct: 62  EELERLFRQPSEEATGRLVVDVPSRVARRLVAPALGQLLARHPRLQVVLGSSDRHVDLVA 121

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK-HNLITFGD 196
           +  DC +R   P+Q S L+ R+L  + +   A+P YLK    P   ++L   H ++ +  
Sbjct: 122 EGVDCVVRF-GPLQDSDLVARRLGRVALVNCASPDYLKRHGMPRQAEDLAAGHLMVGYAS 180

Query: 197 LIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD- 251
                 E F  +       G+ R     S + VN+  + +  C  G G+  +P + V D 
Sbjct: 181 PHSGREERFEVVEH-----GQVRDIALASRVVVNNAENYIACCRAGLGLIQVPRFDVDDL 235

Query: 252 --NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               +LV ++         V   YP       + +A R  +F+   DW
Sbjct: 236 LRGGDLVEVLPQSRAEGMDVSVLYPHR-----RHRAVRIDVFM---DW 275


>gi|229526631|ref|ZP_04416035.1| D-serine dehydratase transcriptional activator [Vibrio cholerae bv.
           albensis VL426]
 gi|229336789|gb|EEO01807.1| D-serine dehydratase transcriptional activator [Vibrio cholerae bv.
           albensis VL426]
          Length = 330

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 2/143 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AA++L L+ S+IS +I+ LE E+GIKLF R  R + LTE
Sbjct: 16  SFQLSKLHTFEVAARHNSFSLAADELSLTPSAISHRINKLEEEIGIKLFERTHRKVELTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +++    +  + L    I+++    + SG L I +     Q  L   +  F  LYP 
Sbjct: 76  EGQRIYHSLQKTLNNLNQEIIDIKNG--ETSGLLTIYSRPSFAQCWLVPRIHAFKELYPS 133

Query: 122 IQIQLILDNKDIDISMDYADCAI 144
           I ++L+  N++I       D AI
Sbjct: 134 IDLKLLTGNENISFQGSGIDVAI 156


>gi|89054043|ref|YP_509494.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88863592|gb|ABD54469.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 287

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 126/291 (43%), Gaps = 35/291 (12%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD L++   +A +G  T AAE+L + Q++I R+I  LE  + +KL  R   G+ LT  
Sbjct: 7   LDWDDLKLILALAEAGYVTRAAEKLRVDQTTIPRRIRRLEDRLDLKLIERIKGGVVLTAA 66

Query: 63  GSKLHRVTSEVYHKLETT-QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             +L R+  EV   L+      L+   V  +G ++++ T D   +LL   L +    +P 
Sbjct: 67  ADELVRIAREVETGLDDALAAPLEAPPV--TGTVKLSGT-DFMLDLLTDALVDLQKKFPG 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-- 179
           + ++L   N  + +     D AIR +       L+ R+L  I +  +A P +  N     
Sbjct: 124 LILELKPTNDYLSLDRRETDVAIR-QAESPHDGLVGRRLPLIPLGVFAMPDFADNAPGKP 182

Query: 180 ------PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
                 P  + E+D        D+I K   D   +A VD              S ++  +
Sbjct: 183 WLSWTLPRGVSEID--------DMILKHDTDGRIVARVD--------------SMMAQAR 220

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            C  G G A LP   V  +P L  ++     PS+  +    E L++  +++
Sbjct: 221 LCARGMGCAFLPINYVSAHPELSDLVLIADGPSYPAWVVTHEELRHVPRVR 271


>gi|296161004|ref|ZP_06843815.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295888703|gb|EFG68510.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 310

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 18/242 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           LR F  VAR G  T AA +LH++ S++S+QI  LE  +G+ LF R ARGL LTE+G    
Sbjct: 10  LRCFEAVARLGGVTQAARELHVTHSAVSQQIKVLEESMGVALFMREARGLRLTEEGRLYA 69

Query: 65  -KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     ++ H     Q    ES      +L I T     Q+ L   L  F   +P  +
Sbjct: 70  LDIRMALRDITHATRRAQARPHES------ELVITTLPSFAQHWLVPRLAGFRDAHPYYR 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY--LKNCREPL 181
           I+L+   +  D     +D  IR+ +      + Q+KL    M   AAPH+    + R P+
Sbjct: 124 IRLLTSLQVEDFRQGVSDIGIRMGQG-HWPDVAQQKLFDDEMVVVAAPHFALAPDGRLPV 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +++    LI+  D       D+   A V  P  E  +  L  N    ++   + G G+
Sbjct: 183 TARDVMACPLISSPD---TPWHDWCQAAQVAEP-AEGAV-VLSANDSNLVIAAVLQGQGV 237

Query: 242 AL 243
           AL
Sbjct: 238 AL 239


>gi|53717924|ref|YP_106910.1| DNA-binding transcriptional activator GcvA [Burkholderia
           pseudomallei K96243]
 gi|76809534|ref|YP_331891.1| DNA-binding transcriptional activator GcvA [Burkholderia
           pseudomallei 1710b]
 gi|126441402|ref|YP_001057334.1| DNA-binding transcriptional activator GcvA [Burkholderia
           pseudomallei 668]
 gi|126452884|ref|YP_001064576.1| DNA-binding transcriptional activator GcvA [Burkholderia
           pseudomallei 1106a]
 gi|134283649|ref|ZP_01770348.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167717675|ref|ZP_02400911.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167736715|ref|ZP_02409489.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167813813|ref|ZP_02445493.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167822331|ref|ZP_02453802.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167843921|ref|ZP_02469429.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167892422|ref|ZP_02479824.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167900920|ref|ZP_02488125.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167909139|ref|ZP_02496230.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167917175|ref|ZP_02504266.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217425010|ref|ZP_03456506.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|237810473|ref|YP_002894924.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242314374|ref|ZP_04813390.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254182129|ref|ZP_04888726.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254188061|ref|ZP_04894573.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196971|ref|ZP_04903395.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254261374|ref|ZP_04952428.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|52208338|emb|CAH34271.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|76578987|gb|ABA48462.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|126220895|gb|ABN84401.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126226526|gb|ABN90066.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|134245058|gb|EBA45153.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|157935741|gb|EDO91411.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169653714|gb|EDS86407.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184212667|gb|EDU09710.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217392030|gb|EEC32056.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|237502942|gb|ACQ95260.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242137613|gb|EES24015.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254220063|gb|EET09447.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 293

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 118/260 (45%), Gaps = 14/260 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF+ A E+LH++  +ISRQI+  E  +G  +F+RH + + LT++G +  
Sbjct: 11  LRAFEAAARHESFSAAGEELHVTHGAISRQIAAFEAWLGKPVFHRHGKRVKLTDEGRRYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  +    ++L+E+    +  LRI          L   L  F    P+++++L 
Sbjct: 71  ATVEAAFDSIAGATVQLRETGA--ARVLRINALPTFAMKWLLPRLSRFQREAPNVELKLS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186
             N  +  S+D  D AIR R P +  +    + +   +    +   LK  R P+ S  +L
Sbjct: 129 TSNAPLG-SLDGFDVAIR-RGPGRWPNCTSGRFLDESVIPVCSAALLK--RAPIASADDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H L+   D  P    +  W A    P+ G  + S    + +   +Q  V G G+AL P
Sbjct: 185 ARHVLL-HSDTRPDAWRE--WFAAAGAPLKGRKKQS---FDHFYLALQAAVDGLGVALGP 238

Query: 246 DYIVKDNPNLVRIMEDVITP 265
             ++ D     R++  +  P
Sbjct: 239 LPLIADELASGRLVTPLPGP 258


>gi|126457218|ref|YP_001075338.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167723322|ref|ZP_02406558.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167849312|ref|ZP_02474820.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167897916|ref|ZP_02485318.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|254190048|ref|ZP_04896557.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254263640|ref|ZP_04954505.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|126230986|gb|ABN94399.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|157937725|gb|EDO93395.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254214642|gb|EET04027.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 290

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 25/294 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 8   NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFALFMRHARGLTLTVEGEQ 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +      +   +  F   +PD+ +Q
Sbjct: 68  LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MRWVLPRIMRFQREHPDLHVQ 122

Query: 126 LILDNK-DIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    + D+D   +  D AI         + +  L   +L  +      AP  L+    P
Sbjct: 123 MTTTWRHDVDFQSEPFDAAIVYGMSPGPDVAAVPLFDERLTPV-----CAPDLLEG--RP 175

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
           L+ +++L  H L+  T      +   D+   A VD P   P    L + +  +   + V 
Sbjct: 176 LARVEDLACHTLLHPTRDHRDWRRWLDYAGAAGVD-PDRGPSFDSLDLATSAATQGFGVA 234

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LG       D+  +    L   ++ V       YF YPE++    K++ F  ++
Sbjct: 235 LGDLTLSEEDFAAR---RLAMPLDIVQRTGARYYFVYPESVAQQQKIQRFSGWL 285


>gi|262044161|ref|ZP_06017234.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038499|gb|EEW39697.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 303

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 118/278 (42%), Gaps = 23/278 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  W+  R F  V + GS + A+  L+++Q +  R I+GLE  +G  LF R   GL  T+
Sbjct: 4   SIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLLATD 63

Query: 62  QGSKLHRVTSEVY----HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             +   RV +E        LE T         +  G +R+A +   G  +L   +     
Sbjct: 64  A-ALALRVHAEAMDNTARALERTAANFSRDRAELRGVVRVAASEVAGAEVLPPLVARLRQ 122

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P++ I+L+L N+  D+    AD A+R+  P Q   LI R+L  I +  +A   YL   
Sbjct: 123 ACPNVVIELMLSNRFQDLLHREADIAVRIVAP-QQEQLIARRLGRIELGLHATAAYLTRQ 181

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P ++ +L  H LI F    P             R         ++ +S L+ +     
Sbjct: 182 GLPATLDDLASHALIGFDSATPLVRRALQAYPRFQR-----EAFAMRTDSDLAQLSLIRA 236

Query: 238 GSGIAL----LPDYIVKDNPNLVRIMEDVITPSFTVYF 271
           G+GI +    L D I+         ++ V+   F++Y 
Sbjct: 237 GAGIGICQVPLADGIIP--------LQRVLAADFSLYL 266


>gi|229522406|ref|ZP_04411822.1| D-serine dehydratase transcriptional activator [Vibrio cholerae TM
           11079-80]
 gi|229340391|gb|EEO05397.1| D-serine dehydratase transcriptional activator [Vibrio cholerae TM
           11079-80]
          Length = 314

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 2/143 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AA++L L+ S+IS +I+ LE E+GIKLF R  R + LTE
Sbjct: 16  SFQLSKLHTFEVAARHNSFSLAADELSLTPSAISHRINKLEEEIGIKLFERTHRKVELTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +++    +  + L    I+++      SG L I +     Q  L   +  F  LYP 
Sbjct: 76  EGQRIYHSLQKTLNNLNQEIIDIKNGET--SGLLTIYSRPSFAQCWLVPRIHAFKELYPS 133

Query: 122 IQIQLILDNKDIDISMDYADCAI 144
           I ++L+  N++I       D AI
Sbjct: 134 IDLKLLTGNENISFQGSGIDVAI 156


>gi|170690230|ref|ZP_02881397.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170144665|gb|EDT12826.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 451

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 131/290 (45%), Gaps = 9/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +GS T AA    LS + +   +  LET +G +L +R  R   ++  G   +
Sbjct: 154 MTVFVRVVETGSLTAAAVACELSPTMVGNHLQALETRLGTRLIHRTTRKQQVSAFGQAYY 213

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   ++ ++    +    P G+LR+   I      L  ++ ++   YP++++ ++
Sbjct: 214 QRCVEILGLIDDSEQLALDHLATPRGRLRVTAPIVFSNECLIPSIADYCARYPEVKLDIV 273

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+  D  + AIR+   + +  L+ R L    +   A+P YLK    P +  EL 
Sbjct: 274 ATDALSDLMDDGFEAAIRI-GALANPDLVARPLTPYRLVLCASPAYLKAHGSPATPDELS 332

Query: 188 KHNLITFGDLIPKC---MEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H  +T+    P+         W L   D     P    L++++  ++ +  + G GIA+
Sbjct: 333 AHQCLTYA-YPPRSEWHAAQAEWILHGRDGRASVPVDGRLKIDNAEALRKAVLRGLGIAM 391

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP  ++ ++     L +++ +   P   +   Y    + + KL++F +F+
Sbjct: 392 LPAILIDEDLRAKRLRKVLPEYSAPERQLSLLYLRERQMSLKLRSFIDFV 441


>gi|50120906|ref|YP_050073.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611432|emb|CAG74880.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 309

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 127/287 (44%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VA   SF  AA+   +++S++S  I GLE  +G++L +R  R + LTE G +L 
Sbjct: 9   LKAFIAVADQRSFRRAADLSGVTRSTLSHAICGLEERLGVRLLHRTTRSVALTEAGEQLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +      + LE    E+ ++  +P G LRI    +  + LL   +  +   YP + + L+
Sbjct: 69  QRMRPHLNGLEQALEEVADTQGQPIGSLRINGGEEAIRLLLHTVVPSYQARYPSVVLDLV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D + +DI  +  D  IRL + +    +  R    +   A A+P YL     P    +L 
Sbjct: 129 VDGRLVDIVAEGFDAGIRLAEDVPRDMVAIRFGNDMRFLAVASPAYLMKHPAPSVPDDLV 188

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I     +P     + W  +   + I       L +NS   ++   + G GI  +P+
Sbjct: 189 QHQCIR--QRLPSGRR-YRWEFSRHGQDIALDVPGTLTLNSSPLMVCAAIQGLGITYVPE 245

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +   D+  LV ++E    P   +   +P        L+A  + I
Sbjct: 246 VHARAALDDGRLVTVLEPWSPPIPGLCLYFPANRHMPASLRALVDMI 292


>gi|221638431|ref|YP_002524693.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|221159212|gb|ACM00192.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
          Length = 296

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 126/281 (44%), Gaps = 30/281 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     +AR GSF  AA  L +S +++S  I  LE   G++LF+R  R + LTE G    
Sbjct: 8   LEAVLAIARKGSFRAAALDLGVSTTALSHTIGRLEASFGVRLFHRTTRSVALTEAGRDFV 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +    ++      ++     P+G LRI  ++  G+ +    L  FL  YP +Q+ L+
Sbjct: 68  ARIAPALTEIRAAMDTVRSQRATPAGMLRINASVQAGRAVAPLVLA-FLRRYPKMQVDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-----HA-YAAPHYLKNCREPL 181
            + + +DI  +  D  IR       + L+ R ++ + +     HA  A+P +L    EP 
Sbjct: 127 TEGRLVDIVAEGFDLGIR------PTDLVPRDMIALSLGRPVRHAVVASPDWLARHPEPR 180

Query: 182 SIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           S  +LD    +      G L+    E  + LA      G      L V+   +I +  VL
Sbjct: 181 SPADLDPGQCLRVRLPNGALLRWPFEK-DGLALPFEAKGR-----LSVDEP-AIARAAVL 233

Query: 238 -GSGIALLPDYIVKD---NPNLVRIMEDVIT--PSFTVYFC 272
            G+GI    +  V +   N  ++R++ED     P F++Y+ 
Sbjct: 234 DGAGIGYFIEADVAEDIANGRMIRLLEDWTPNRPGFSLYYS 274


>gi|254522080|ref|ZP_05134135.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
 gi|219719671|gb|EED38196.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
          Length = 321

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GSF+ AA +  L    ++  ++ LE E+ ++LF R  R L LT +G+
Sbjct: 4   FDDLQLFVRTAALGSFSQAAREADLLPGQVAAAVARLERELDLRLFVRTTRSLRLTGEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  EV   L   Q  +Q    +  G L+++   D G+NLL   L  F   +P +++
Sbjct: 64  LYLPYAQEVLATLREGQARVQGEDTELHGTLQLSAPSDFGRNLLLPWLSAFRAAHPRLRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA-PHYLKNCREPLSI 183
            L L ++  D+  D  D AIR+      +S +   L+  +    AA P YL+    P  +
Sbjct: 124 HLRLSDEVADVFRDPVDVAIRIGH-FDDASYVALPLLEGNRRVLAASPGYLQRRGTPTRL 182

Query: 184 QELDKHNLITF 194
            EL +H+ + +
Sbjct: 183 DELREHDCLVY 193


>gi|194364179|ref|YP_002026789.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194346983|gb|ACF50106.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 299

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 21/294 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F   A + SF        +S S+  + ++ LE  +G++LF+R  R +TLT +G   
Sbjct: 9   NLQTFVHAADTRSFVETGRLQGISASAAGKCVARLEHALGVRLFHRSTRSITLTAEGQLF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  + +  + EL +    PSG LRI   + L  +L    + EF+  YPDI++ L
Sbjct: 69  LARCRRILDERDAARTELAQPHAAPSGTLRIG--LPLVGDLTLPLMAEFMAAYPDIRLDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  D  +R+ +P   S +  R+L        A+P YL+    P +  +L
Sbjct: 127 DFSDRLVDVIEEGFDAVLRVGEP-SDSRMNARRLGVFPRRIVASPAYLQRRGVPRAPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-------VNSYLSIMQYCVLGS 239
            +H L+ +    P   +   W      PI  P     Q        N+  + +   +   
Sbjct: 186 LQHTLLHY--RFPSTGKLELW------PIQWPGNEAPQELPVHMVANTIEARVALALRDI 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A +P + V+D   +  L+ ++++ +      +  +P       KL+ F +F+
Sbjct: 238 GLAFVPVHSVRDALADGRLLTVLDEHVHSCGIFHLLWPSGRHVLPKLRVFIDFV 291


>gi|254255144|ref|ZP_04948460.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124900881|gb|EAY71631.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 301

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 127/303 (41%), Gaps = 31/303 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT----- 60
           + LR F   AR GSFT AA++L ++  +ISR +  LET +G  LF RH R + LT     
Sbjct: 9   NSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLETWLGRPLFERHNRRVELTVVGRA 68

Query: 61  ---EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
              E G+ L R+           Q  +          LR++         L   L  F +
Sbjct: 69  YLAEVGASLDRIALATAQHFGPRQQHV----------LRVSAPATFSLRWLVPKLSSFQV 118

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL--K 175
            +P I+++L   N+ I+   D  D  +R         + +  L  I +    AP  L  K
Sbjct: 119 AHPGIEVRLSTSNEPIEKLRDSVDVIVRGGPQTVDGYVAEEFLSEIRL-PVCAPKLLEDK 177

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
             R P  +      +  T+  + P+      WLA        PR S    + YL+ +Q  
Sbjct: 178 PLRTPADLAGFTLLHAATYPGMWPE------WLAAAGHADLVPRHSLTLEHFYLT-LQGA 230

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV--YFCY-PEALKNTGKLKAFRNFIFL 292
           + G G+A+ P  +V D+    R+++    P+     YF Y   A    G ++AF+ ++ +
Sbjct: 231 LDGLGVAMGPIALVADDIAEGRLVQPFSGPALPPWRYFTYVATARAQDGAVRAFKEWLKV 290

Query: 293 KAR 295
             R
Sbjct: 291 AGR 293


>gi|330967633|gb|EGH67893.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 294

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L LT  G     
Sbjct: 8   RVFIAINERGSLIAAAETLDMSRAMVTRYLAQMEGWAGARLLHRTTRKLGLTAPGQATLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G +RIA +  L Q +L   +  +L  YP   + L +
Sbjct: 68  RCQQLLALADAVPLAADTQVDEPRGMVRIACSQSLAQAVLAPAVTAYLQRYPGTSVDLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   +LI R L        A+P YL     P   QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQL-DPNLIARPLGHCDSQVCASPAYLAAHGTPSRPQELSA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E  +    +  P+G      L  N  + +++    G+GIAL P + 
Sbjct: 187 HNCLTYSYFGKSLWEFTHQHTQLSVPVG----GNLSANDSVVLLEAAAAGAGIALQPVHS 242

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V     +  L+ +M D    +  ++  Y      +  L+   +F+
Sbjct: 243 VAPLIASGKLIALMPDYQPRALGIHAIYTSRHHQSATLRILLDFL 287


>gi|262278326|ref|ZP_06056111.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258677|gb|EEY77410.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 291

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 1/173 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L  F +VA       A+    + ++++SR+I+ LE ++G++L  R ARGL LTE 
Sbjct: 1   MNLNALSDFILVATHEGLGRASRVSGIPKATLSRRIADLEEQLGVRLIERSARGLKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L   T  +  ++      + +    P G+LRIA  +   Q  +     EF   YP+I
Sbjct: 61  GQQLMSRTEILMLEVAEAMTSVSDGISTPRGRLRIAAPVLFSQLTMGRIGAEFCAAYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           +I+++ +++ +DI  +  D AIR+  P   S+L+ R      +   AAP   K
Sbjct: 121 EIEVVAEDRLVDIIEEQFDVAIRI-NPSPDSNLVGRCFAKDKLVVVAAPEITK 172


>gi|271501369|ref|YP_003334394.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344924|gb|ACZ77689.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 320

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 6/204 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   +  F      GS + AAE   +S  + S+ +  LET +G++LF+R  R ++LT
Sbjct: 1   MISELRSITTFVSTVELGSLSKAAEAQQISPQAASKALKQLETYLGVRLFHRTTRSMSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +           L+      +++    +G LRI     +GQ ++   L E+  LYP
Sbjct: 61  EEGQRFLEAAQPALIGLQQALSAAKQTREAFAGALRIVGPRSVGQMIIGNVLDEYCRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q  + LD++  +   +  D  +R+    Q   LI R+L  + +   A+P YL+    P
Sbjct: 121 EVQPDVQLDDRIGNWVEERVDVGLRISVSPQ-DGLIARRLFPLQLIICASPTYLRKYGIP 179

Query: 181 LSIQELDKHNLITF-----GDLIP 199
           L++ +L  H    F     G +IP
Sbjct: 180 LTLNDLSIHRCSVFRHAGTGHVIP 203


>gi|254464554|ref|ZP_05077965.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206685462|gb|EDZ45944.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 298

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 136/300 (45%), Gaps = 15/300 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD ++VF  VAR  S + A   L +  +++ R+++  E  +   LF +  +G  L+
Sbjct: 1   MDPQWDDMKVFLAVAREASLSGAGRVLKMDPATVGRRVARFEAALETPLFVKSPQGYALS 60

Query: 61  EQGSKL--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
             G +L  H   +E   +  T  +     ++  SG++RI         +L     +    
Sbjct: 61  AAGDRLLIHAEAAEQAMRAGTEALTGPNDTL--SGQIRIGAPDGAANYILPQVCAQISED 118

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            PD+ IQ++   + I++S   AD A+ +  P     L+Q K+    +H  A+ HYLK+  
Sbjct: 119 NPDLDIQIVALPRVINLSRREADMAVTVSAPTAGKLLVQ-KICDYQLHLVASRHYLKDHP 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
               +++L  H +I +   IP  +  ++ ++L      IG  R++ L  NS    ++   
Sbjct: 178 PVTRLEDLKGHKMIGY---IPDMIFDKELDYL----NDIGVERVA-LASNSVSVQIKMAA 229

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            G+ I +  D+ +  +  L +I+ D ++ + + +    +  + + +L  F   +    RD
Sbjct: 230 QGTAICVAHDFSLPAHRMLRKILTDKVSLTRSFHLVRHQGDQRSERLNRFAQALSKGIRD 289


>gi|114568899|ref|YP_755579.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114339361|gb|ABI64641.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 311

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 11/271 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SF  AA++L ++  +IS+QI  LE  VG  LF R  RGL LTE G  
Sbjct: 11  NALRAFEAAARLESFARAADELAVTPGAISQQIRQLEEHVGTPLFVRQGRGLILTEAGRA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              +TSE +  LE   + L    V     L ++         L   L  F    P +++ 
Sbjct: 71  AAGITSEAFETLERA-VSLMRQPVH-RRALTVSVAPSFAGKWLAPRLFRFQEEVPGVEVW 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D++   AD  IR   P    +L +  L+   +    +P  L++   P   + 
Sbjct: 129 IAATSERVDLAAGAADLGIRY-GPGGDMTLNEETLLPEEVLPVCSPDLLRDG--PALNRA 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
            D H      D  P+   D    A+  +  G   +     ++ N    ++   V G G+A
Sbjct: 186 QDLHGQTLLHDASPETEVDGADWASWLKARGARGVDVSGGVRFNQSALVIDAAVAGRGVA 245

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVY 270
           L    +V+++     LV +  D  TP  + Y
Sbjct: 246 LAKRALVQNDLASGRLVALFPDGTTPVRSAY 276


>gi|86747653|ref|YP_484149.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570681|gb|ABD05238.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 297

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +A   SF  AA  L +S S++S  +  LE  +G++L +R  R +  TE G
Sbjct: 6   DLSDLTAFAAIAAHRSFRKAANDLGVSASTLSHIMRTLEANLGVRLLHRTTRSVAPTEIG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + V    +    +L+    +PSG LRI       + LLQ  +  F   +P++ 
Sbjct: 66  ERLLGRLNPVLRDFDAALQDLEAWRSRPSGTLRINAAEGAVRLLLQTVVPAFFARHPEMA 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+ + + +DI  +  D  IR+ + +    +  R    I   A A+P YL     P + 
Sbjct: 126 LDLVTEARLVDIVAEGFDAGIRIGEAVPRDMVAVRFGGAIRFVAVASPGYLAAHPPPRTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I F     K  + F W  A   + +       L ++    +++    G GIA
Sbjct: 186 DDLVHHACIRFRL---KSGQLFRWEFARHGQELAVDVAGPLTLDHVELMVEAAADGLGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +PD   +       +V ++++       ++  YP        L+AF
Sbjct: 243 YVPDRTAQPYLSRGAVVGVLDEWCPKIPGLFLYYPGHRHVPAGLRAF 289


>gi|116250636|ref|YP_766474.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255284|emb|CAK06359.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 280

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 9/245 (3%)

Query: 23  AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82
           A   L  S + +S++I  LE  +G +L  R  R ++LTE G   +     +   LE  + 
Sbjct: 4   AGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFYDRVLGILAGLEEAEF 63

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
            +   S +  G L+I+     G+  +  +LK+F+  +P++ I L+L ++  DI     D 
Sbjct: 64  YISGRSAQMHGTLKISAPTSFGRMHIAPHLKDFMEAHPELAINLVLTDEFSDIVGGGFDL 123

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202
           AIR+ + +  SSL+ R+L  +     A+P YL    EP  I EL  H        +P   
Sbjct: 124 AIRIAE-LTDSSLVARRLAPVRRLLCASPDYLAAHGEPKHIDELKHHR------CLPAHN 176

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDV 262
            D   L   D  +       L  NS   I +  + G GIAL   + + +     R+++  
Sbjct: 177 NDTWRLKGPDGALSLRPEGLLITNSSEVIREAVIAGLGIALRSTWDIGEELKSGRLVQ-- 234

Query: 263 ITPSF 267
           + P++
Sbjct: 235 VLPAY 239


>gi|257488065|ref|ZP_05642106.1| fused ISPsy20 transposase IstB/transcriptional regulator LysR
           family protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331008728|gb|EGH88784.1| fused ISPsy20 transposase IstB/transcriptional regulator LysR
           family protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 315

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 128/275 (46%), Gaps = 17/275 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLAVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQHLLGYAESIESTLHMACEQVSGSSVALSGHIRMGCTEGFGSFFITPQLSHFLDSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +   P 
Sbjct: 131 ISLDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQAYLDS--HPA 187

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVL 237
             Q++D   H  I++ D +    E   +L+ +  P  +      Q+ S   I QY   + 
Sbjct: 188 IEQKVDLSGHVFISYVDDLAFSSE-LLYLSNL-LPNAQA-----QLRSTSVIAQYTAALQ 240

Query: 238 GSGIALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
           G  +A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 241 GRALAILPCFLAAQDPRLLPVLAEEVNITRQFWMY 275


>gi|254439761|ref|ZP_05053255.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198255207|gb|EDY79521.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 298

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 13/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+++  F  VAR+GS   AAEQL+ +  +I R I  LE   G++LF R  +GL L   
Sbjct: 1   MDWEQVPYFLAVARTGSLRRAAEQLNANHGTIDRHIKALEAAYGVQLFSRTRKGLALNSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G     +  E    L + +  L     + SG +R++    L  +++      F   YP+I
Sbjct: 61  GQLFLPIAEEAETALVSARRRLSGLDREESGIVRVSMPPILAYHIMAPIFSRFSEAYPNI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCREPL 181
            +++ L ++  DI+    D +IR    + +  ++ R++  +    +A+ +YL +N   P 
Sbjct: 121 NLEIRLTDRFEDIAGFETDVSIRAAYEV-ADDVVGRRMFPLAAGIFASQNYLDRNL--PS 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY-CVLGSG 240
           +    +  + I +G   P      N +     P  E R S      ++ +M+  C    G
Sbjct: 178 AGARGEGLHWIGWGSTNPVA----NIIEQSPYPKAEIRHSVADTVMHMDLMRNDC----G 229

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++L+  +     P LV++    +    +++      L  T +++ F +F+
Sbjct: 230 MSLMLAFCNSVYPELVQVPGTELFHDRSIWLLLHSDLSRTTRVRRFVDFV 279


>gi|158426309|ref|YP_001527601.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158333198|dbj|BAF90683.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 308

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 138/292 (47%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++R F  VA  GS +  A +L + QSS++R +  LE  VG+ L  R  R ++LTE+G++
Sbjct: 9   ERMRTFVRVAERGSLSAVARELGIGQSSVTRHVRDLEEAVGVVLLNRTTRRVSLTEEGAR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   +E     L+++   P+G +R++ +   G   L   +  F   YP+I++ 
Sbjct: 69  YYADCLQILRLVEQAGDGLRDTRQSPAGTVRLSCSAAFGVLHLCRLMFAFQDRYPEIEVD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D A+RL  P+  SSL  R L        AAP YL     P + Q+
Sbjct: 129 LSLSDERVDLVQEGVDLALRL-APLTDSSLKLRSLGHSRRVLAAAPAYLAAYGRPQTPQD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGSGI 241
           +  H  +         +   + + ++  P GE    P     +V+  L++ +  + G G+
Sbjct: 188 IADHEGVRM------TIVSGSDMLSLRGPDGERHLVPFGGRFRVDHGLAVREALMAGRGL 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL   ++V D      L +++ D   PS  +        +   +++   +F+
Sbjct: 242 ALTHIWLVHDLLAEGRLEQLLPDYEAPSMPLSLLIVPGRETITRVRLLIDFL 293


>gi|325681014|ref|ZP_08160546.1| transcriptional regulator, LysR family [Ruminococcus albus 8]
 gi|324107243|gb|EGC01527.1| transcriptional regulator, LysR family [Ruminococcus albus 8]
          Length = 301

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 70/116 (60%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR  S++ AAE+L+LSQ ++SRQ+  LE E+G  L  R  +G+TLTE+G  L 
Sbjct: 6   LRYFLAVAREQSYSVAAERLYLSQPTLSRQLKELEEELGTTLLIRSNKGVTLTEEGMILR 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   E+   +E T++E+++SS + SGK+ I         L+    ++    +PDI+
Sbjct: 66  KRAEEIVELMEKTELEVRQSSEQVSGKVYIGAGETYSIKLIADTAQKLQCEHPDIR 121


>gi|149189919|ref|ZP_01868198.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148836234|gb|EDL53192.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 294

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 20/205 (9%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
           +VAR  S T AA++L L+  ++S+Q+  +E  +G  +F RHARG+ LTE+G+KL  V + 
Sbjct: 14  IVARHTSITSAAKELSLTVGAVSQQLHQIEQRLGFTVFERHARGIRLTERGNKL--VEAA 71

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL---- 128
            +H L   +   Q + V    ++R+  T       L   L++F   YPD+QI        
Sbjct: 72  GHHLLSIEEAVFQLTRVSERKQIRLKLTPSFAFKWLVPRLEDFYRRYPDVQIHTFAEGAL 131

Query: 129 ---DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              D++D D+++DY        K   +  L++  L+ +  H Y   H        L+   
Sbjct: 132 VDSDSRDFDVAIDYGPIPY---KRSDAELLLEESLIPVMSHDYWQRH------PDLATSN 182

Query: 186 LDKHNLITFGDLIP--KCMEDFNWL 208
                +    DL+P     +D+ WL
Sbjct: 183 RAWEQVTLLHDLMPWEGAPKDYEWL 207


>gi|262370254|ref|ZP_06063580.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262314596|gb|EEY95637.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 296

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 127/268 (47%), Gaps = 13/268 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  SGS   AA+QL  + S +SR +  LE+++ + L  R  R L LT
Sbjct: 1   MKSTIEELTAFVSIVDSGSIVKAAQQLDQTTSGVSRALQRLESKLNVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +      ++   L   +  LQ +  +  G +RI +      +++   ++EF+  YP
Sbjct: 61  YEGQQFLTKARKILLDLTEAEESLQNNDAEAFGLIRIDSATPFVLHVIVPLIEEFMQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I++   ++ ID+     D AIR  + +  SSL  + L    ++  A+P Y +    P
Sbjct: 121 KIDIEITNHDQVIDLLEHKTDVAIRFGE-LADSSLHAKLLCKSRLYIVASPVYAQKHGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRP-IGEPRISCLQVNSYLSIMQYCVLG 238
            +  EL  H L+ F    P  +    W +   D P I + +I C   ++  ++ Q  + G
Sbjct: 180 KNAAELSSHTLLGFSQ--PAHLN--TWPIQLEDEPLIIQAKIKC---SNGETVRQLALQG 232

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVI 263
           +GIA L  ++V+    +   + ++ED I
Sbjct: 233 AGIACLSRFMVEQDIQDGRFIALLEDQI 260


>gi|225571108|ref|ZP_03780125.1| hypothetical protein CLOHYLEM_07214 [Clostridium hylemonae DSM
           15053]
 gi|225160189|gb|EEG72808.1| hypothetical protein CLOHYLEM_07214 [Clostridium hylemonae DSM
           15053]
          Length = 293

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 132/311 (42%), Gaps = 31/311 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  K   F      GSFT AAE L+ SQS ISR I+ LE E  + L  R   G+ LT
Sbjct: 1   MDMNIQKYMAFIKTVEYGSFTKAAEILNYSQSGISRMINDLEKEWKVILLERRKTGVKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G KL     EV  K E  Q+++ E +   SG +RI T   +  + L   + EF   YP
Sbjct: 61  SDGMKLLPFAKEVCRKYEMLQMQVDELNGLQSGFIRIGTFSSVATHWLPNIIHEFQKSYP 120

Query: 121 DIQIQLILDN-KDID--ISMDYADCAIRLRKPIQSS----SLIQRKLVTI----HMHAYA 169
            I+ +L L N  +I+  +     DC   LR P++S      L Q  L+ +    H  A  
Sbjct: 121 HIEYELRLGNYSEIEEWLLEGSVDCGF-LRLPVRSDLDTLPLEQDALLAVLPVSHPMADC 179

Query: 170 APHYLKN-CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
               + + CREP  +  L++ N     D+               R   +P+   +  + Y
Sbjct: 180 DRFPISSFCREPFIM--LERENNTEIADIF-------------SRFSLKPQTRLITWDDY 224

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            ++M     G GI++L   I+K  P  + + E  + P      C+    K T  L   R 
Sbjct: 225 -AVMSMVEKGLGISMLHQLILKRTPYNIIVKE--LDPPIYRDICFAVRNKKTASLAVKRF 281

Query: 289 FIFLKARDWKF 299
             +LK R   F
Sbjct: 282 SEYLKYRQDSF 292


>gi|124265938|ref|YP_001019942.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124258713|gb|ABM93707.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 320

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 16/243 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V R  S T A++ L L+QS++SRQI  LE ++G+KL  R  R +  T +G +
Sbjct: 12  DLIRGFVAVGRRMSITLASQDLCLTQSAVSRQIGALEEQLGVKLLVRGYRSIAFTAEGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           L R       +++    E+  + V +P   + ++ +I +    L   L  F  L+P + +
Sbjct: 72  LFRSADGAVQQMQDVMGEIHTTGVLRP---VMLSASIGVTGLWLLPRLSRFQKLHPGVDL 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKNCREPLSI 183
           ++  +N+  D+  D  D AIR   P  + +   R L    +   A P   LK+ R   S 
Sbjct: 129 RVSANNRVADLRSDGIDLAIRYTTPALAPAGATR-LFGESVAPVAHPSLGLKSLR---SA 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSG 240
           Q L K +L+ F D     +   +WL       G   +     L  N Y  ++Q  +   G
Sbjct: 185 QALAKVSLLEFDDPTHPWLRWGDWLGAA----GWSDVRHQGMLHFNQYDQVIQAALDAQG 240

Query: 241 IAL 243
           +AL
Sbjct: 241 VAL 243


>gi|89073762|ref|ZP_01160276.1| hypothetical LysR, Transcriptional regulator [Photobacterium sp.
           SKA34]
 gi|89050537|gb|EAR56029.1| hypothetical LysR, Transcriptional regulator [Photobacterium sp.
           SKA34]
          Length = 316

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 134/293 (45%), Gaps = 12/293 (4%)

Query: 6   DKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D L+   ++A  G   +FT AAE+L +S+S +S+QI  LE  +G +L  R  R + LTE 
Sbjct: 3   DNLQQMVILAAIGHEQNFTKAAERLGISKSQVSKQIKCLEERLGCQLVQRSTRTVVLTEI 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      ++   +   +  +     + +G LRI      G   +   L EF    P++
Sbjct: 63  GVQYADYGQQLIDTVSEAEAMVAGYRNEITGVLRIGIAQSFGNIHITSALAEFQKKNPEL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L +   ++  +  DC I + +      ++ RKL        A+P Y+    EP+ 
Sbjct: 123 ELEISLFDHRPNLLEEGFDCWIAIHEH-PPEGMVARKLAKCEFVVVASPDYIAQHGEPIV 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +L +HN IT+     K +   NW    D      R++   ++++  +++   + G GI
Sbjct: 182 PGDLRQHNCITYQSRERKYV---NWEFGRDGLKQSIRVNGNYRIDNAPAVLDAALSGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L  Y++ D      L+ ++ D   T    +Y  YP       K++ F +F+
Sbjct: 239 AYLSTYLLTDEIKTNKLITLLNDWKTTVELPIYAVYPRRKYLAPKVRCFIDFM 291


>gi|124381222|ref|YP_001024341.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126447576|ref|YP_001078235.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|254174596|ref|ZP_04881258.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254356952|ref|ZP_04973227.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|124289242|gb|ABM98511.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126240430|gb|ABO03542.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|148025979|gb|EDK84102.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160695642|gb|EDP85612.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
          Length = 290

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 25/294 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 8   NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFALFMRHARGLTLTVEGEQ 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +      +   +  F   +PD+ +Q
Sbjct: 68  LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MRWVLPRIMRFQREHPDLHVQ 122

Query: 126 LILDNK-DIDISMDYADCA----IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    + D+D   +  D A    I     + +  L   +L  +      AP  L+    P
Sbjct: 123 MTTTWRHDVDFQSEPFDAAIVYGISPGPDVAAVPLFDERLTPV-----CAPDLLEG--RP 175

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
           L+ +++L  H L+  T      +   D+   A VD P   P    L + +  +   + V 
Sbjct: 176 LARVEDLACHTLLHPTRDHRDWRRWLDYAGAAGVD-PDRGPSFDSLDLATSAATQGFGVA 234

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LG       D+  +    L   ++ V       YF YPE++    K++ F  ++
Sbjct: 235 LGDLTLSEEDFAAR---RLAMPLDIVQRTGARYYFVYPESVAQQQKIRRFSAWL 285


>gi|295700400|ref|YP_003608293.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439613|gb|ADG18782.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 303

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 125/295 (42%), Gaps = 16/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF+ AA++L ++Q ++S  I  LE ++GI LF R  R + LTE G   +
Sbjct: 13  LRAFEAAARHLSFSRAAQELFVTQGAVSHHIQKLEADLGIALFERQTRAIELTETGRAYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  L     E++  S K    L +          L   L  F L +PDI++QL 
Sbjct: 73  AKVHAAFELLRLGTSEVRAFSTKRK-TLNVGLLSSFASRWLASRLHTFPLAHPDIELQLR 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D+     D AIR  +        QR L++  +    +P  L   + P   + LD
Sbjct: 132 PDIALADVPGGEVDVAIRYGRGGWPGVASQR-LMSERLSPVCSPSLLAGRKRPR--KALD 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP---IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              L+ F  LI      F W A        +GE +   LQ++ Y  +++  + G GIA+ 
Sbjct: 189 ---LLRFPLLISYSTHSFEWEAWSRHAGLDLGEAQ--RLQLHDYNIVVEAALAGQGIAMG 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRNFIFLKAR 295
              ++       +LV  + D +     + ++      K      AFR++I   A+
Sbjct: 244 RHRLIAQQLAQGSLVPALPDAVLDDARIGWWLVTRKGKLDAAANAFRSWIMQTAQ 298


>gi|229156008|ref|ZP_04284109.1| Transcriptional regulator, LysR [Bacillus cereus ATCC 4342]
 gi|228627615|gb|EEK84341.1| Transcriptional regulator, LysR [Bacillus cereus ATCC 4342]
          Length = 300

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 144/314 (45%), Gaps = 41/314 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H+++  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVQQARSAIQDLNGLQQGSLTIGALLTVVNYLLPTAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ +  L   DI   +  +  D  I    P+Q    I   L    +       +    
Sbjct: 122 NIELSVFGLRTGDIREKLLQNELDIGITFL-PVQDKETISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    + FN+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTV--------YFC-----YP 274
           +Q    G GI +LP    D++   N   ++I     TP+  +        Y C     + 
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIYRKDKYMCAATREFI 288

Query: 275 EALKNTGKLKAFRN 288
           E LK+T  +++F+N
Sbjct: 289 EQLKST--VRSFQN 300


>gi|190575579|ref|YP_001973424.1| putative HTH and LysR family transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190013501|emb|CAQ47136.1| putative HTH and LysR family transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
          Length = 288

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT AA +L +SQ+++S QI GLE  +GI+LF+R  RG+ LT +G+ 
Sbjct: 9   NALRAFEAAARHQNFTRAALELCVSQAALSHQIRGLEDRLGIRLFHRLPRGVALTYEGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+ V +E + ++  +         +    L +  T   G   L   L  F   +PDI+++
Sbjct: 69  LYPVLNESFERISASIARYTGGPAREVLTLGVVGTFATG--WLLPRLAAFEAAHPDIELR 126

Query: 126 LILDNKDIDISMDYADCAIRL 146
           L   N  ID++ +  D AIR 
Sbjct: 127 LQTHNNRIDLAGEGLDLAIRF 147


>gi|149908487|ref|ZP_01897149.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149808321|gb|EDM68258.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 301

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 128/279 (45%), Gaps = 14/279 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D + L  F  +   GS   AA+ L +   ++SR +  LE  +G+KL  R A  + LT+
Sbjct: 3   SIDLNSLAWFCKIVEQGSIQAAAQLLLVPAPTLSRHLKQLEQRLGVKLLNRSAHVMELTQ 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + ++      + ++   ++L+  +V  +G +R++    +  + L   L EF+  YP 
Sbjct: 63  EGQRYYQGLHASINAIDEALLQLENDNVSLTGMIRLSAPNSVINSYLNLWLIEFMQTYPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +L     D    ++  D A+ +  P + +  +Q++L +      A+P YL   R   
Sbjct: 123 VKCELNTALDDNQAILEGVDLALTV-YPSKQADWVQKRLFSRTFCVVASPEYLILARALD 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +   L +H+L+           D  W  +   D  +  P    +  N   +I+  C+ G 
Sbjct: 182 NPTMLSEHHLLGSN-------SDHQWVFINGDDSTVVSPSFRYIN-NDVHNILAACLQGL 233

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPE 275
           GI  +P++ ++ +     LV+++ D   P   +Y  YP+
Sbjct: 234 GICCVPEFFIRQHIGKGRLVQLLTDYQLPERGLYMTYPD 272


>gi|146282500|ref|YP_001172653.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145570705|gb|ABP79811.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501]
          Length = 306

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF   A +GS + AA  L +S +  S+ +  LE  +G+KLF+R  R L+LTE G    
Sbjct: 8   MRVFVRAASAGSLSAAARHLDMSPAMASKHVDALERRLGVKLFHRSTRRLSLTEAGGNYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +  +    V+ +G LR+   +  G   +   + EF   +P ++++L 
Sbjct: 68  EACQRILPEIDEAEAGVASQRVEATGLLRMNVPLTFGTQFIAPLIPEFSRRHPAVKVELG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+     D A+R+ + ++ S L  R+L    +   AAP YL     P S+ +L 
Sbjct: 128 LTDSQVDLLDGGWDMAVRIGR-LEDSPLQARRLADCPLLVCAAPSYLDQRGVPRSVADLG 186

Query: 188 KHNLITF 194
           +HN + +
Sbjct: 187 QHNCLGY 193


>gi|13474483|ref|NP_106051.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025236|dbj|BAB51837.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 301

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 118/255 (46%), Gaps = 11/255 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+F   +L+ F  VA  G+ + AA+ L +SQSS++  I  LE+++G++LF RH RGL +T
Sbjct: 1   MAFTIRQLQFFIAVAEQGTVSGAAQNLSISQSSVTEAIKELESDLGVELFERHPRGLNIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +  R  +++   +   +           G+L++  T  +   +L   L  +   YP
Sbjct: 61  HKGHQFLRHATKILADVSDARRSFSGEQAVAGGRLQLGVTSLVAGYVLSDLLARYRRAYP 120

Query: 121 DIQIQLILDNKDIDISM---DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYLK 175
            +++  I DN D    +      D A+ +   ++  + +Q +++ +  +    P  H L 
Sbjct: 121 GVEVSAIEDNGDYLEHLLIGGKLDIAVMVTSNLRDRTALQSEILEVSAYRLWLPLGHSLV 180

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
              + +SI ++    LI     + +  E+   L      IG       +  S  ++    
Sbjct: 181 GA-DIISIGDIAGEPLIML--TVDEIEENTGKLLAA---IGAKPHVAFRTRSVEAVRSLV 234

Query: 236 VLGSGIALLPDYIVK 250
             G+G+ALLPD + +
Sbjct: 235 ATGAGVALLPDLVYR 249


>gi|254180633|ref|ZP_04887231.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           1655]
 gi|184211172|gb|EDU08215.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           1655]
          Length = 311

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 133/303 (43%), Gaps = 35/303 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F+ VA  G+FT AAE LH+SQ ++S+QI  LE  +G++LF R AR + LTE G+   
Sbjct: 6   IRYFFAVAEQGNFTRAAESLHVSQPTLSQQIRQLEGVLGVQLFDRSARAVRLTEFGAAYA 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATT-----------IDLGQNLLQGNLKEFL 116
           R       +LE  +  + +     SG LR+A T           ID G N    NLK  +
Sbjct: 66  RHARAALQQLEAGRRAVHDVENLQSGSLRLAMTPTFSAYLIGWLID-GFNARYPNLKLTI 124

Query: 117 LLYPDIQIQLIL--DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
              P  QI+ +L  D  D+ I+ D          P+   +L    LV    H +A     
Sbjct: 125 REMPQEQIEPLLADDELDVGIAFDATQSPEIETMPLWIETL---ALVVGRDHRHA----- 176

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS 230
              R+PLS  E     LI    L+ +    F     VD    R    PR++ ++VNS  +
Sbjct: 177 -RRRKPLSPDEAAGEPLI----LLSRA---FATRGKVDQYFHRNGVTPRVA-IEVNSISA 227

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++    G    +LP  I +   +L  I  D   P  T      +    +  ++AF + +
Sbjct: 228 MLEMVRGGRIATVLPSAIAERRDDLCAIRLDPPLPQRTAALLMRKGGYRSAAMRAFVDHM 287

Query: 291 FLK 293
             +
Sbjct: 288 LAR 290


>gi|94314505|ref|YP_587714.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93358357|gb|ABF12445.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 333

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 107/244 (43%), Gaps = 13/244 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  D L+ F  V R  S T AAE L L+QS++SRQ+  LE ++ ++LF R  RG+  T +
Sbjct: 9   FSLDLLKGFVAVGRRMSITQAAEDLCLTQSAVSRQVRALEEQLQVRLFIRRHRGVAFTPE 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQN--LLQGNLKEFLLLYP 120
           G +L R       +L+    EL+    K  G+  +  T  +G     L   L      YP
Sbjct: 69  GERLFRSADGALLQLQNVAAELR----KRDGRQPVTVTASIGVAGLWLLPRLGSLQRQYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKNCRE 179
            + ++L  +N+  D+  D  D AIR   P  ++  +   L    +   A P         
Sbjct: 125 GLDVRLSANNQISDLRADGIDLAIRY-CPASAAPPLAVHLFDETIAPVANPSVGAHRVAT 183

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P ++ EL    LI F D  P  +   NWL          R   L+ N Y  ++   + G 
Sbjct: 184 PEALAELP---LIEFDDPRP-WLHWRNWLGAQGYRQAS-RRGILRFNQYDQVIHAALAGQ 238

Query: 240 GIAL 243
           G+AL
Sbjct: 239 GVAL 242


>gi|325272987|ref|ZP_08139303.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324101881|gb|EGB99411.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 313

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 11/148 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W  L VF   AR  SFT  AE+LH++  ++S+Q+  LE  +G +LF R ARG+ L+ +
Sbjct: 10  FVW--LHVFACAARHLSFTRCAEELHITPGAVSQQMRQLEERLGYRLFLRRARGVELSAE 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +  ++ Y  +E   + L    ++  G LR+ +        L   L  F   YPDI
Sbjct: 68  GQRLAQTVTDAYGSIEAELLRLDAGEIR--GTLRVRSIPSFLAKWLTPRLPRFQQRYPDI 125

Query: 123 QIQLILDNK-------DIDISMDYADCA 143
           +++L+ ++        D D+++D  D +
Sbjct: 126 ELRLVAEDSAQALTPGDFDLAIDLNDGS 153


>gi|260428577|ref|ZP_05782556.1| transcriptional regulator MetR [Citreicella sp. SE45]
 gi|260423069|gb|EEX16320.1| transcriptional regulator MetR [Citreicella sp. SE45]
          Length = 301

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 121/280 (43%), Gaps = 30/280 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  ++  LR    +  +G    AA+QL+++QS++S QI GLE + GI+LF R ++ + L+
Sbjct: 1   MHIEFRHLRTIRAIHEAGGLARAADQLNITQSALSHQIKGLEDQAGIELFVRRSKPMRLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L R+  +V  ++E  Q E        SG+L IA         L   L+ F   +P
Sbjct: 61  AAGLRLLRLAEQVLPQVEAAQAEFAGLRAGRSGRLHIAIECHACFEWLFPVLEAFRKHWP 120

Query: 121 DIQIQL----------ILDNKDID--ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168
           D+ + +           L+ +D+D  IS D  D    +  P+   S +    V    H  
Sbjct: 121 DVDVDIRPGLAFDALPALEKEDVDVVISSDPEDLPNIVFTPLFDYSPV---FVAASAHPL 177

Query: 169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
           AA  Y       +  Q+     LIT+    P      +  + +  P      +  QV   
Sbjct: 178 AAKPY-------VDAQDFRGETLITY----PVDRARLDVFSQLLSPAKVEPSAIRQVELT 226

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT 268
             I+       G+A+LPD++V++    V+   D +T   T
Sbjct: 227 AVILLLVASNRGVAVLPDWVVRE----VKYNSDYVTRPLT 262


>gi|172065406|ref|YP_001816118.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997648|gb|ACB68565.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 310

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 4/189 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VAR GSF  AA +LH++  ++ +QI  LE   G+ LF R  RG+ LT++G+ 
Sbjct: 18  NALRAFDAVARHGSFAGAAAELHVTHWAVGKQIRLLEDWFGLPLFDRRPRGVVLTDEGAV 77

Query: 66  LHRVTSEVYHKLETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L    S  +  L T  + L+ +++  + SG +R+   +      L   L +F   YPDI 
Sbjct: 78  LLNDVSHAFEHLGTAVVRLRHNTLTHRISGVVRVNVPMSFAFCWLLPRLADFHSRYPDID 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +    D  D  +R   P Q + ++ R L+         P  L+  R   S+
Sbjct: 138 VRVSTTSRKLRYVADAFDIGVR-SGPEQGAGVVSRPLMPDLRVPACNPALLRQ-RPIQSV 195

Query: 184 QELDKHNLI 192
            +L  H L+
Sbjct: 196 ADLRHHTLL 204


>gi|163845023|ref|YP_001622678.1| hypothetical protein BSUIS_B0899 [Brucella suis ATCC 23445]
 gi|163675746|gb|ABY39856.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 310

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 124/280 (44%), Gaps = 18/280 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    +S + +    IAT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAM-ASAQSTSSFSIATLPTFGTRWLMPRIPDFVEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE 179
           + +   +   D      D AI   +P+ + +    L    +V +     A+P  LK  R 
Sbjct: 129 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHATCTFLCSEVIVPV-----ASPSLLKT-RR 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S +EL+   L+      PK    +     V+   G+          +  ++   + G 
Sbjct: 183 PASPEELENEPLLHLATR-PKMWAQWFESCGVE---GQSAYRGHCFEQFSMVIGAALAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           G ALLP Y+++    +  LV + E  +      Y   PE 
Sbjct: 239 GFALLPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEG 278


>gi|162453923|ref|YP_001616290.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161164505|emb|CAN95810.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
          Length = 313

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 120/288 (41%), Gaps = 11/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L VF  VAR  SF  AA +L ++  ++S+ I  LE  VG+ L  R  R + LTE G 
Sbjct: 8   FEGLTVFLTVARHRSFRAAAAELGVTTGAVSQAIRALERRVGLPLLSRTTRRVGLTEAGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +LH   +    ++      L E   +P+G LR+         +++  L  F   YPD+ +
Sbjct: 68  RLHERLAPAAGEISAALEALDELRGQPAGLLRLTVARTAVPFVIEPVLPRFRRAYPDVAV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D+  +D++    D  +RL + +       R    +      AP Y      P   +
Sbjct: 128 EISVDDALVDLAETGFDAGVRLGEDLAQDMTAVRLTPDLRWLVVGAPAYFAAHGRPEEPE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I +     +    + W    D R I       L VN     +     G G+A 
Sbjct: 188 DLLAHTCIRYRF---QSAALYRWEFVRDHREITVHAPGTLTVNDADLAVSLARDGLGLAY 244

Query: 244 LPDYIVKDN---PNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAF 286
           + D  V ++     L   +E      P F +YF  P   +   KL+AF
Sbjct: 245 MFDLAVAEDLASGALATALERHAPTGPGFFLYF--PARAQAQAKLRAF 290


>gi|330974083|gb|EGH74149.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 187

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 4/185 (2%)

Query: 3   FDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           F  ++L+   VF +VA  GSFT AAE+L+L+ S+IS+ I+ LE  +  +LF R  R L+L
Sbjct: 2   FSSERLKGIDVFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSL 61

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G   +R  + V   LE  +I L  +  +P GK+RI      G+  +   + +F+  +
Sbjct: 62  TEAGETFYRTCTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQH 121

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P +Q  +   ++ +D   +  D  +R+       +++  +   T  +   A+P Y+    
Sbjct: 122 PRLQPHVSFSDRYVDPVHEGIDIVVRIGGSDAWPAAMAHQFFGTQKLIFCASPEYVNQYG 181

Query: 179 EPLSI 183
           +P ++
Sbjct: 182 QPKTV 186


>gi|153800496|ref|ZP_01955082.1| D-serine deaminase activator [Vibrio cholerae MZO-3]
 gi|124123940|gb|EAY42683.1| D-serine deaminase activator [Vibrio cholerae MZO-3]
          Length = 314

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 2/143 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AA++L L+ S+IS +I+ LE E+GIKLF R  R + LTE
Sbjct: 16  SFQLSKLHTFEVAARHNSFSLAADELSLTPSAISHRINKLEEEIGIKLFERTHRKVELTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +++    +  + L    I+++    + SG L I +     Q  L   +  F  LYP 
Sbjct: 76  EGQRIYHSLQKTLNNLNQEIIDIKNG--ETSGLLTIYSRPSFAQCWLVPRIHAFKELYPS 133

Query: 122 IQIQLILDNKDIDISMDYADCAI 144
           I ++L+  N++I       D AI
Sbjct: 134 IDLKLLTGNENISFQGSGIDVAI 156


>gi|157372669|ref|YP_001480658.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157324433|gb|ABV43530.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 305

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 131/288 (45%), Gaps = 8/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A SGSF+ A  +L +S +++ + ++ LE+ VG++LF R+ R LTLTE+G +  
Sbjct: 5   LECFVSSAESGSFSAAGRKLGISSAAVGKNVTKLESLVGVRLFQRNTRKLTLTEEGERFL 64

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S     ++     L  S    +G L+++     G + +   L +FL  YP I     
Sbjct: 65  QEVSGGLLSIQCALKSLSSSGGVAAGTLKVSMGTAFGLHFVLPMLPDFLARYPSIVPDWH 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            DN+ +D+  ++ D A+     + +  +I R+L   H    A+  YL+        ++L 
Sbjct: 125 FDNRQVDLIGEHFDAAMGGGIEL-AQGMIARELAPAHGVLVASTQYLQQYPSLQQPEQLV 183

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL-- 243
            H  I      P+     N  L   D     P ++  + VN   +  +   +G GIAL  
Sbjct: 184 SHAGIFIRS--PQTGRVRNLPLRNADNEQRAPSMTIKMTVNEPEAAARAAEMGLGIALIS 241

Query: 244 LPDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P+ +   ++  LVR++        +V+  +P       K + F ++I
Sbjct: 242 MPNALPYLESGRLVRVLPGWYVDRGSVHLYFPTTKFLPTKTRVFVDYI 289


>gi|103485619|ref|YP_615180.1| LysR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98975696|gb|ABF51847.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis
           RB2256]
          Length = 301

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 133/297 (44%), Gaps = 26/297 (8%)

Query: 6   DKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+L V   F  VA +GSF+ AA +L++ Q SIS+ ++ LE  +G++LF R  R LTLTE 
Sbjct: 2   DRLAVMEQFLAVAEAGSFSAAARRLNVGQPSISKAVAQLEAYLGVRLFQRSTRSLTLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +               +I  +E   + +G +R+     L +  L   L+EF   +P++
Sbjct: 62  GRRYRDGAERAIAAAAAAEIAAKEDGGRLAGPVRVVVPTCLARLHLVPRLREFSDRFPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L + +++ D+     D A+R+   +  ++L+  ++    M A  A         P  
Sbjct: 122 TLDLEITDRETDVVASGVDIALRI-GTLADTALVASRMARTRM-ALVANKAENGLDAP-- 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRIS-----CLQVNSYLSIMQYCV 236
                 HN +    +I +     N W+       G  RI+      L ++S  +     +
Sbjct: 178 ------HNFMGQPAIISRLHHAKNSWVFR----HGSARIAIMVHPALILDSDDAARSAAL 227

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G A+LP   V    D  +LV ++ + +     ++   P     T +++AF +++
Sbjct: 228 AGLGYAMLPRPFVADLIDTGDLVELLPNHMLEDIDLWALLPAGRDQTARVRAFLDWL 284


>gi|22124450|ref|NP_667873.1| hypothetical protein y0536 [Yersinia pestis KIM 10]
 gi|45440286|ref|NP_991825.1| LysR family transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594688|ref|YP_068879.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 32953]
 gi|150260675|ref|ZP_01917403.1| putative LysR-family transcriptional regulator [Yersinia pestis
           CA88-4125]
 gi|218927483|ref|YP_002345358.1| putative LysR family transcriptional regulator [Yersinia pestis
           CO92]
 gi|229836533|ref|ZP_04456699.1| putative LysR-family transcriptional regulator [Yersinia pestis
           Pestoides A]
 gi|229840140|ref|ZP_04460299.1| putative LysR-family transcriptional regulator [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842221|ref|ZP_04462376.1| putative LysR-family transcriptional regulator [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229904040|ref|ZP_04519153.1| putative LysR-family transcriptional regulator [Yersinia pestis
           Nepal516]
 gi|21957238|gb|AAM84124.1|AE013655_1 hypothetical [Yersinia pestis KIM 10]
 gi|45435142|gb|AAS60702.1| putative LysR-family transcriptional regulator [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51587970|emb|CAH19573.1| putative LysR-family transcriptional regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|115346094|emb|CAL18962.1| putative LysR-family transcriptional regulator [Yersinia pestis
           CO92]
 gi|149290083|gb|EDM40160.1| putative LysR-family transcriptional regulator [Yersinia pestis
           CA88-4125]
 gi|229679810|gb|EEO75913.1| putative LysR-family transcriptional regulator [Yersinia pestis
           Nepal516]
 gi|229690531|gb|EEO82585.1| putative LysR-family transcriptional regulator [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696506|gb|EEO86553.1| putative LysR-family transcriptional regulator [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229706217|gb|EEO92225.1| putative LysR-family transcriptional regulator [Yersinia pestis
           Pestoides A]
 gi|320013862|gb|ADV97433.1| putative LysR-family transcriptional regulator [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 328

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 138/292 (47%), Gaps = 10/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L  F  +    S + AA +L+++ SS SR ++ LE ++G+ L  R  R + LT+ G 
Sbjct: 21  YKHLENFIKIVECNSLSIAAHKLNITPSSTSRSLAQLEEKLGVVLLKRTTRSIVLTDAGD 80

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L     ++   L+ T +        P G+L+I  +I  G   L     ++     D+ +
Sbjct: 81  YLFHQARQLLLDLDETLVNTHSFYNHPQGQLKITCSIAFGVCHLMHLFSQYKETNSDVCL 140

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L+++ ++++ ++ D A+R+   I   +   R++ TI+     +  YL     P +I+
Sbjct: 141 SVDLNDQLVNLNEEHFDIALRITS-IPPPNFAIRRICTINWVYCGSKEYLMKRGVPATIE 199

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H+ +    + P   + + + +T    +     + +Q NS L ++   +   GI  L
Sbjct: 200 DLEQHDCL----VNPNVSDAWLYKSTEGESVPLKIKNTVQANSSLGLLHAALHHQGIVCL 255

Query: 245 PDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P Y++ D   +  LV I+ D       + +Y  Y  +  N  K+++F +F+ 
Sbjct: 256 PTYMLGDYITSGKLVPILLDYNAKDKEYGLYALYYPSKYNDPKIRSFIDFML 307


>gi|293397141|ref|ZP_06641415.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291420612|gb|EFE93867.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 315

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 127/281 (45%), Gaps = 28/281 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+ F VVA+  +FTHAA++LHL+Q ++SRQ+ GLE ++G  LF R ARGLTLT QG++
Sbjct: 15  DVLKTFVVVAQRLNFTHAAQELHLTQGAVSRQVLGLEQQLGYALFSRRARGLTLTPQGAQ 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY---PDI 122
           L      V   LE     L+  + +P G LRI          ++  L   + L    P++
Sbjct: 75  L---LVPVQQTLEQLAQALERVAAQP-GVLRIKCPT----CAMRWVLPRIIRLQNDRPEM 126

Query: 123 QIQLILD-NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I+L    +  +D + +  D A+    P +   L    L    +     P YL    +PL
Sbjct: 127 RIELTASVSHGLDFASEPFDAAVVFGVP-RGKRLSVHPLFDEVLTPVCTPDYLAAASQPL 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL----ATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           +  +L +  L+          +  +WL    A    P+  P       ++    M   + 
Sbjct: 186 TAADLAEQTLLH------PTRDRRDWLRWLTAAGQAPL--PDAKSQHFDTLDLAMSAALQ 237

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDV---ITPSFTVYFCYPE 275
           G GIA+    +++D+    RI+      +      Y  YPE
Sbjct: 238 GFGIAIGDLCLLEDDLQARRIITPFPLSVASGSGYYLVYPE 278


>gi|225378199|ref|ZP_03755420.1| hypothetical protein ROSEINA2194_03859 [Roseburia inulinivorans DSM
           16841]
 gi|225210005|gb|EEG92359.1| hypothetical protein ROSEINA2194_03859 [Roseburia inulinivorans DSM
           16841]
          Length = 140

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 73/126 (57%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +    R+FY VA +G+ + AA++L++SQ +IS+ I  LE  VG KLF R +RG+ LT
Sbjct: 1   MNQNLSSYRIFYTVANTGNISKAAKELYISQPAISKSIQKLEESVGCKLFSRSSRGVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L+   SE +  L   + +L+ S     G L+I  +  L + LL   LKEF+   P
Sbjct: 61  DEGKLLYEHVSEAFETLTMGEEKLKRSIELGVGHLKIGVSSTLCKYLLLPYLKEFIRQNP 120

Query: 121 DIQIQL 126
            I I +
Sbjct: 121 HISISI 126


>gi|297580123|ref|ZP_06942050.1| D-serine deaminase activator [Vibrio cholerae RC385]
 gi|297535769|gb|EFH74603.1| D-serine deaminase activator [Vibrio cholerae RC385]
          Length = 314

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 2/143 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AA++L L+ S+IS +I+ LE E+GIKLF R  R + LTE
Sbjct: 16  SFQLSKLHTFEVAARHNSFSLAADELSLTPSAISHRINKLEEEIGIKLFERTHRKVELTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +++    +  + L    I+++    + SG L I +     Q  L   +  F  LYP 
Sbjct: 76  EGQRIYHSLQKTLNNLNQEIIDIKNG--ETSGLLTIYSRPSFAQCWLVPRIHAFKELYPS 133

Query: 122 IQIQLILDNKDIDISMDYADCAI 144
           I ++L+  N++I       D AI
Sbjct: 134 IDLKLLTGNENISFQGSGIDVAI 156


>gi|126464410|ref|YP_001045523.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|126106221|gb|ABN78751.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 288

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 120/266 (45%), Gaps = 33/266 (12%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD +R+F  +AR G+   AA +L L  +++SR+I  +ET +G+ LF R   G  LT+QG
Sbjct: 5   NWDDIRLFLALAREGTLQGAARRLGLGVATVSRRIERMETALGLPLFLRRQTGHALTDQG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQE------SSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           + L         + E  ++ LQE      + V+  G +R+A+   L   ++   L   L 
Sbjct: 65  AAL-------LPRAEAMELALQEMRREAGAQVEIRGLVRLASIESLVTPVVLPALGPLLA 117

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P + ++++     +++    AD A+R+  P +  +L  R+L  +    Y         
Sbjct: 118 ANPGLDVEVLWGTATVNLHRHDADLALRMVPP-ERGNLTVRRLAGMGFGLYGPAEGAPPA 176

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R             +T+ D  P       W A      G      L +N+  + ++    
Sbjct: 177 RH------------VTWPD-EPSLAVPLGWSAA----FGARTAPRLALNTLAAQVEAVRD 219

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVI 263
           G G+A+LP ++ +  P  +R++ +++
Sbjct: 220 GLGVAVLPHFLAR--PEGLRLLANLL 243


>gi|83749251|ref|ZP_00946251.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83724091|gb|EAP71269.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 318

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 1/174 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AA++L L +SS+S  +S LE ++G++LF R  R L LT+ G
Sbjct: 5   DWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGVRLFERSTRRLRLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +     L   + E +  +  ++
Sbjct: 65  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMREHAGLR 124

Query: 124 IQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           I++ +  + ID ++  Y       R+P+  S ++ +++  +      AP  L+ 
Sbjct: 125 IEVDVAPRQIDPLAQGYDIMLTVPREPLPDSGMVAQRVFDLRRAVVIAPALLER 178


>gi|293392623|ref|ZP_06636943.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291425025|gb|EFE98234.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 302

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 130/296 (43%), Gaps = 19/296 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V     F  A   L + +S +SR+++ LE  +G++L  R  R  ++T
Sbjct: 1   MLIDLNDLFFFASVVEHQGFAAAGRALGIPKSKLSRRVALLEERLGVRLIQRSTRRFSIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   ++    +  + E  Q  ++++  +P G +R++  I L    +   L  F+  YP
Sbjct: 61  DVGQNYYQHCKAMLVEAEAAQQAIEQTRAEPCGTVRLSCPIALLHTRVGDMLARFMADYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAP---HYLKN 176
            + + L   N+ +D+  +  D A+R+R  P++ S L+ + L        A+P     L +
Sbjct: 121 KVSLHLEATNRRVDVVGEGLDLALRVRPPPLEDSDLVLKVLAQRSWCVAASPALVRALGD 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQY 234
            R+P   ++L ++  +  G   P+      W  T    R      +  L  +  L +   
Sbjct: 181 VRQP---EDLLRYPTLDLGPARPQ----HQWTLTGPDTRRFDWEHLPRLVTDDMLMLRTA 233

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            + G+G+  LP  +++D     +++ ++ D       V+  YP      G L A R
Sbjct: 234 AIAGAGVVQLPSMMMRDQILRGDMMALLPDWRPQGGVVHAVYP---SRRGLLPAVR 286


>gi|229825660|ref|ZP_04451729.1| hypothetical protein GCWU000182_01022 [Abiotrophia defectiva ATCC
           49176]
 gi|229790223|gb|EEP26337.1| hypothetical protein GCWU000182_01022 [Abiotrophia defectiva ATCC
           49176]
          Length = 309

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 148/308 (48%), Gaps = 47/308 (15%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA +G+ +HAA++L++SQ +IS+ ++ LE  +  KLF R +RG+TLTE G  L+  
Sbjct: 14  IFNTVAEAGNISHAAKELYISQPAISKAVTRLEQNLETKLFVRSSRGVTLTEAGKMLYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL--- 126
           T+  +  L+  +  ++++    +G L+I  +  L + +L   L++F+  YP I+I +   
Sbjct: 74  TNAAFKHLKQAEDTIKKNKKLGTGNLKIGVSTTLCKYVLMPYLEKFIRQYPHIKISISCQ 133

Query: 127 -------ILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCR 178
                  ++ N  +DI +     + RL     S   L++   V       A P YLKN +
Sbjct: 134 STYQTLNLIQNHKVDIGL--VGESGRLENVAFSPIGLVEDGFV-------ATPAYLKNLK 184

Query: 179 -----------EPLSIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQ 224
                      E  ++  LD+HN+        + ++++   N L+T     G      L+
Sbjct: 185 KRHPEAADNPFEYANLMLLDQHNVSR------RYIDEYVRNNELSTGQMLTGH----ILE 234

Query: 225 VNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTG 281
           V+S   ++++  +G GIA +    VK+     +L  +   V      + F + +   ++ 
Sbjct: 235 VSSMDLLIEFAKVGLGIACVITDFVKNELKEGSLTTVPLSVPIEKREIGFTWLKDYSSSE 294

Query: 282 KLKAFRNF 289
           +L +F NF
Sbjct: 295 ELDSFINF 302


>gi|156934136|ref|YP_001438052.1| hypothetical protein ESA_01963 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532390|gb|ABU77216.1| hypothetical protein ESA_01963 [Cronobacter sakazakii ATCC BAA-894]
          Length = 301

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 118/252 (46%), Gaps = 12/252 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +    +  V   G F  A+  L   +S +SR+++GLE ++G++L  R +R   +T
Sbjct: 1   MQHDLNDYFYYAEVVSHGGFAAASRALKQPKSKLSRRVAGLEAQLGVRLIERSSRRFRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +     +  + E  Q  + ++  +P G +R +    + + ++Q  L  F+  YP
Sbjct: 61  DIGQAFYDQCRAMLLEAEKAQAVIAQARKEPQGMVRFSCPTGMVE-IIQAMLPAFMHRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + +Q+I  ++ +D+  +  D A+R+R  + S + LI R L T +    A+P        
Sbjct: 120 QVNLQIIAIDRPVDLIEERVDVALRVRTELTSDAELIMRTLGTSNRILVASPQLASKLNG 179

Query: 180 PLSIQELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             +I  L  H  +   D    I   +E       + R   +PR SC   + + ++    +
Sbjct: 180 --AIDTLACHPTLGTSDEPGEISWALEHEQGKRCLIR--HQPRFSC---SDFTAVRMAAI 232

Query: 237 LGSGIALLPDYI 248
            G GIALLPD++
Sbjct: 233 EGLGIALLPDHV 244


>gi|206578459|ref|YP_002239327.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|262043583|ref|ZP_06016694.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288936181|ref|YP_003440240.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290510764|ref|ZP_06550134.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206567517|gb|ACI09293.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|259039055|gb|EEW40215.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288890890|gb|ADC59208.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289777480|gb|EFD85478.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 301

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 22/258 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W     F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE 
Sbjct: 7   FAW-----FVQVVDHGGFAAAGRALDQPKSKLSRRIAQLEERLGVRLIQRTTRQFAVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +  + E  Q  ++    +P G +RI   + L    +   L  F+  YP +
Sbjct: 62  GQTFYQHCKAMLIEAEAAQQAVETLRAEPRGSVRITCPVTLLHVHIGPMLARFMARYPGV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + L   N+ +D+  +  D AIR+R +PI+ S L+ R L        A+P  +     P 
Sbjct: 122 TLHLEATNRRVDVVGEGIDVAIRVRPRPIEDSDLVMRVLADRGHRLVASPDLISRLGRPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQY 234
           +  EL     ++ G           W  T   P G        PR+        L++ + 
Sbjct: 182 APSELSAWPGLSLG----ANKHQHKWQLT--GPGGARAEVYFTPRMVT---TDMLALREA 232

Query: 235 CVLGSGIALLPDYIVKDN 252
            + G G+  LP  +V+D 
Sbjct: 233 AMAGVGVVQLPLLMVRDQ 250


>gi|194366146|ref|YP_002028756.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348950|gb|ACF52073.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 298

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 135/305 (44%), Gaps = 27/305 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+  +F  V  +GS T AA++L LS++ +S  +  LE E+G+ L  R  R L LT  G +
Sbjct: 5   DRFDIFRAVVEAGSLTAAADRLGLSRAVVSFNLKRLEQELGVTLLLRSTRHLALTGAGEQ 64

Query: 66  L--HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H V +    +         +  ++  G LR+ TT +  Q  L   L+ F   +P +Q
Sbjct: 65  FLQHCVQALDAAQAAIDAARRDQQHLQ--GVLRLTTTPEYAQLRLIPALEAFRARHPALQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN------C 177
           + L       D+  +  D AIRL + +  S L   +L    + A AAP  L         
Sbjct: 123 LHLSTSPAPADLIPERFDLAIRLGR-LPDSGLHANELERHPLCAVAAPSLLARLPSADAA 181

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            +P+ +  L +       D +P    D +    AT       P  + ++V+   S+  + 
Sbjct: 182 DDPVQLGTLPRLGYPRLAD-VPVIAPDGSDALFAT------NPGNAVVRVDGASSLRAFA 234

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V G+G+ +LP  +++D+     L  ++     P  +VY  YP + + + K++   +F+  
Sbjct: 235 VAGAGVTVLPRLLIEDDLAQDRLRPVLRQHRFPQQSVYAVYPHSTQPSPKVRQLIDFL-- 292

Query: 293 KARDW 297
             R W
Sbjct: 293 --RGW 295


>gi|152997717|ref|YP_001342552.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150838641|gb|ABR72617.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 297

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 8/174 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++ F   AR  SF  AA +L+++ ++IS QI  LE  + ++LF R  R +TLT++G  
Sbjct: 9   NAIKAFESAARLNSFKDAANELNVTPTAISHQIRALEDSLKVRLFERKTRAVTLTKEGEL 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    ++    L +T  +L+ S       L I+TT       L  NL +F  LYPDI IQ
Sbjct: 69  LAASANQSLQDLLSTVNQLKGS----PRTLTISTTSSFAAMWLVPNLADFQQLYPDIDIQ 124

Query: 126 LILDNKDIDISMD-YADCAIRLRKP---IQSSSLIQRKLVTIHMHAYAAPHYLK 175
           +  +   ID+  D   D AIR  +P   + + +LI + L+   +  +A P Y K
Sbjct: 125 IRAEESLIDMEHDRRVDMAIRYGEPPKQLDTKTLIYQPLIQESIGFFATPVYWK 178


>gi|294634136|ref|ZP_06712690.1| cyn operon transcriptional activator CynR [Streptomyces sp. e14]
 gi|292829860|gb|EFF88215.1| cyn operon transcriptional activator CynR [Streptomyces sp. e14]
          Length = 303

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 131/292 (44%), Gaps = 20/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    VA  G+FT AAE+LH+SQ ++S+QI  LE  +G++L  R  R + LT+ G+   
Sbjct: 4   LRYLLAVAEHGNFTRAAEELHISQPTLSQQIKQLERTLGVQLLDRTGRTVRLTDAGAVYT 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L   +  + +      G LR+  T      L+     EF   +P + + L 
Sbjct: 64  DHAQRALRDLAAAERAIHDVRDLSRGHLRLGVTPTFTAYLVGPLTAEFHARHPGVSLALT 123

Query: 128 LDNKD-IDISM--DYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              +D ++ ++  D  D  I    P    I ++ L    L  +     AA H+ +   EP
Sbjct: 124 ETTQDRVETALLADELDLGIAFTGPHLPGITATPLFTETLSLV----TAARHH-RTPPEP 178

Query: 181 LSIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L  Q L D+   +  GD   +   D  +LA  D  +  PRI  ++ NS  ++ +  V  +
Sbjct: 179 LGAQALRDRQLALLSGDFATRGHVD-AYLA--DHRV-TPRI-AVEANSIQALTE-IVRRT 232

Query: 240 GIA-LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A +LPD I  D+P+L+ +      P+ TV     E    T    AF + I
Sbjct: 233 GLATVLPDAIAHDHPHLIPVPLAPPLPTRTVTLLTREGAYRTAATHAFTHLI 284


>gi|221068116|ref|ZP_03544221.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713139|gb|EED68507.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 312

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-KL 66
           L  F  VA+  S T+AA  + ++ +++S+ I  LET + ++LF R  R + LTE G   L
Sbjct: 9   LAAFEQVAQHRSLTYAAHAIGVTPAALSQTIKKLETRLDVRLFDRTTRSVNLTEAGRIYL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R++  + +  E T+ +LQ  +    G LR+  +   G+ L++  L EF   +P I ++L
Sbjct: 69  ERISPALANLREATE-DLQLQAGVEGGTLRLTISHPAGKVLVEPMLAEFFAHHPHIHVEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + D+  +DI  +  D  IR  + ++   +       + M   A+P YL+    P    EL
Sbjct: 128 VYDDGFVDIVREGFDIGIRNGESLEGDMVAMPLTQDLTMSFGASPAYLQAHGVPQHPDEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           + H  I +   +      + W   +D  + E  +S  L VN   + M+  + G G+
Sbjct: 188 EHHQCINY--RMSSSGAVYKWEFNIDGKLCERAVSGPLTVNHGDTAMRAALDGVGL 241


>gi|218708886|ref|YP_002416507.1| LysR family transcriptional regulator [Vibrio splendidus LGP32]
 gi|218321905|emb|CAV17895.1| transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 314

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 132/296 (44%), Gaps = 23/296 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ + +   FT AA+ L++S S IS+Q++ LE  +GIKL  R  R LTLTE G   
Sbjct: 8   QMVIFHALIKHEGFTSAAKSLNVSVSHISKQVALLEDSIGIKLVQRTTRSLTLTEAGEVF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   ++++ ++  Q+++       SG  RI  +   G   +   + +   LYP ++I++
Sbjct: 68  YQHCEQLFNTVKAAQMDMDSQRDDISGIFRIGLSQSFGTLHIIPAIDQLRQLYPQLRIEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +    + QR L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMIEERLDLWITNNEDLPEGYIAQR-LADSQFVVAASPDYLIKAGTPHVPSDL 186

Query: 187 DKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLGSG 240
             HN      LI +  E D+   A  +   G+  +S      Y      ++    V G G
Sbjct: 187 IDHNC-----LIYRSRERDYTSWAFDN---GQENLSVKVAGDYSVDLAEAVRDAAVSGWG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV------YFCYPEALKNTGKLKAFRNFI 290
           +A L  Y+VK+     ++++  + P +        Y  YP       KL A   FI
Sbjct: 239 VAYLATYLVKEEFRTGKLIQ--VLPEWRASQLMPFYAVYPSRKNMPKKLSAVIEFI 292


>gi|254383504|ref|ZP_04998855.1| LysR-family transcriptional regulator [Streptomyces sp. Mg1]
 gi|194342400|gb|EDX23366.1| LysR-family transcriptional regulator [Streptomyces sp. Mg1]
          Length = 292

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 124/261 (47%), Gaps = 14/261 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             + +L  F  VA +  FT AA+++H++Q S+S+QI  LE E+G +LF R    + LT+ 
Sbjct: 1   MQFQQLLYFVAVAETQHFTRAAQRVHVAQPSLSQQIKALERELGAELFSRARGNIALTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L  +   +    +T ++E+QE +    G++R+  T  +   LL G L+ F   +P I
Sbjct: 61  GEALLPLARRILADADTARLEVQELAQLRRGRVRLGATPSVCTGLLPGVLRAFHTAHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCA-----IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           ++ LI ++  +D+  + A  A     I L  P  + +L   +L+T  +   ++       
Sbjct: 121 EL-LIEESGSLDLVRELARGALDLALIALPLPPSAPALTTVELLTEDLVVVSSAELPPPA 179

Query: 178 -REPLSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYC 235
              PL+I  L    ++ F     +   D   L  T  R  G   +  ++     +++ + 
Sbjct: 180 GGGPLTISALRDEPMVMF-----RHGYDLRDLTVTACRAAGFEPVFTVEGGEMDAVLGFV 234

Query: 236 VLGSGIALLPDYIVK-DNPNL 255
             G GIA++P  +V   +P L
Sbjct: 235 RAGLGIAVVPAMVVDHADPGL 255


>gi|291326216|ref|ZP_06123622.2| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291315239|gb|EFE55692.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 317

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 120/247 (48%), Gaps = 6/247 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD +RVF  +AR G+ + A++ L L  ++ SR++  LE  + ++LF R   G  LT++G
Sbjct: 25  NWDDVRVFLAIAREGTLSAASKALKLGIATTSRRLERLEEALHVRLFTRDQLGYKLTDEG 84

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +           +  S    G + +AT   L  +L+   L     + P++ 
Sbjct: 85  NALISQAEALEQAGYAFGNAARRKSESVMGHVCLATAQGLADHLIIPALPSLTNVNPNLT 144

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+++     +++    AD A+R+ +P + +  I RKL T+    YA+  YL+    P  +
Sbjct: 145 IEIVTGVSTVNLHRRDADIALRMVRPERGNVRI-RKLGTLGFGLYASESYLQRRPNPNRL 203

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L++ + I + +   + ++   WL    R     R++   +++  S +Q    G G+A+
Sbjct: 204 SSLEQDDFIGWSE-AQQHLQSAQWLERTLRGRA-CRLTTSTMSAQFSAVQA---GIGMAV 258

Query: 244 LPDYIVK 250
           LP +I +
Sbjct: 259 LPHFIAQ 265


>gi|323498254|ref|ZP_08103256.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323316682|gb|EGA69691.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 311

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 132/291 (45%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  +FT AA+ L +S S +S+Q++ LE  +G+KL  R  R  T TE G + 
Sbjct: 8   QMVVFATLLKHKNFTVAAKNLGVSVSHVSKQLAQLEESLGVKLVQRTTRTFTPTEAGEQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++ H +E  Q E++    + +G ++I  +   G   +   + E  + YP++Q+++
Sbjct: 68  FHHCQQIVHSVEEAQREIESQRDEVAGLIKIGLSQSFGTLHILPAIDELRVRYPNLQVEM 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +    + QR L        A+P YL     P    +L
Sbjct: 128 HLFDYRVDMLQEGLDLWITNNETLPEGYVAQR-LADSKFVVAASPDYLMKHDTPHHPNDL 186

Query: 187 DKHNLITFGDLIPKCME-DF-NW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +HN      LI +  E D+ +W  +  D  +         V+   ++    V G GIA 
Sbjct: 187 GEHNC-----LIYRSWERDYTSWAFSRSDEQLNVKVSGNYSVDLAEAVRDAAVAGWGIAY 241

Query: 244 LPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D   +  L++++ D   +     Y  YP       K  A  +FI
Sbjct: 242 LATYLIRDEFKDGQLIQLLPDWQASQDMPFYAVYPSRRYLPTKTAAVIDFI 292


>gi|323499929|ref|ZP_08104888.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323315170|gb|EGA68222.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 299

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 128/292 (43%), Gaps = 18/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V AR  S++ AAE+L +SQ+++S++I  LE  +G KLF R  R + LTEQG  L+
Sbjct: 11  LRYFEVAARLNSYSRAAEELFISQAAVSQKIRQLEDGLGCKLFVREGREMRLTEQGKILY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S+ +  + +   ++Q   V+  G L +++T       L   L +F   +P+I I++I
Sbjct: 71  KHVSQGFENIISGLNQIQSEPVE--GLLCVSSTPSFASRWLLPRLWKFSTQHPNIPIRII 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ---SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
                  +    AD AI     +       L++  L    +  + +P   K      +I 
Sbjct: 129 TSCDAPKLKQGDADLAIWQGDELDINGEQKLMKEFLFEETIFPFCSPQLAK------TID 182

Query: 185 ELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             D   L+    LI      +   +W A    P+ +  +  + V+++   M   + G G 
Sbjct: 183 LTDPKQLLQTW-LIHYESGGYPWQSWFAKAGVPMNKESVQWMDVSTFDHAMNAVMAGHGA 241

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L  D +  D      L++  E  +TP       Y        ++ AF N++
Sbjct: 242 CLASDSLASDYVERGLLIKPFEIGMTPGIQFNLFYDHESPRRQRIAAFANWL 293


>gi|262193942|ref|YP_003265151.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262194068|ref|YP_003265277.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262077289|gb|ACY13258.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
 gi|262077415|gb|ACY13384.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 300

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 121/284 (42%), Gaps = 19/284 (6%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            ++R GSF  AA  L +S +++S+ I+ LE E+G++LF R  R ++LT+ G +     + 
Sbjct: 14  AISRKGSFRAAALDLGMSTTALSKAIAKLEEELGVRLFNRTTRSVSLTDAGRRFVEQVTP 73

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
             + +      ++     PSG LRI T    G+ +L   + EFL  +P+++I L+ + K 
Sbjct: 74  ALNDIHEALDAVRSQQETPSGMLRINTFATAGREILAPLVLEFLRRFPNVRIDLVTEGKL 133

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM------HAYAAPHYLKNCREPLSIQEL 186
           +DI  +  D  +R         L+   ++ I +         A P Y      P    +L
Sbjct: 134 VDIVAEGFDFGVR------GEDLVPNDMIAIPLGPERRYAVVATPDYFDGRDRPRVPSDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLP 245
             ++ +     +P     F W    +  + +  +         S+ +  VL S GI    
Sbjct: 188 LAYSCVRV--RLPNGAI-FRWQFEAEGQLAQVDVDGPLTLDEASLARIAVLDSIGIGFFM 244

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  V+D+     LVR+++    P   +   YP         K F
Sbjct: 245 ESDVRDDIEAGRLVRVLDRWTPPLSRLCLYYPSRRNPPAAFKVF 288


>gi|77458588|ref|YP_348093.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382591|gb|ABA74104.1| LysR family regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 322

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L+ F +V   G F   A  L + +S++SR+I+ LE  +G++L  R+ R  ++TE 
Sbjct: 15  LDLNDLQYFVMVVDHGGFAPTARALGIPKSNLSRRIALLEERLGVRLIIRNTRHFSVTEL 74

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +  +  +P G LR+     L +  + G +  F+ ++P +
Sbjct: 75  GQTYYDHCRAMLKQAEAAEAAIAMTRAEPGGVLRVTCPTTLLEECVGGIITRFMAMHPRV 134

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ L   ++ +D+  +  D A+R+R  P+Q S L+ R L        A+P  L    EP 
Sbjct: 135 EMHLEASDRQVDVVAEGVDLALRVRPPPLQDSELVSRVLSQRPQCLVASPALLSRLGEPS 194

Query: 182 SIQELDK 188
             ++L +
Sbjct: 195 EPEDLSR 201


>gi|323528789|ref|YP_004230941.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385791|gb|ADX57881.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 307

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 1/185 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  +A  G+ T AA +L  S  ++SR +  LE E G  L  R  R   LT  G + +
Sbjct: 16  LEVFVAIAEEGNLTAAARRLDRSLQAVSRSLQVLEREAGTLLVARTTRQCRLTTAGEQFY 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   L   + EL E +   +G+LRI      G   L   L  FL  YP +   L 
Sbjct: 76  TRIKQVLADLAMARAELAEYATTVTGRLRICGPTLFGPRYLAPLLAAFLARYPQLTASLD 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D ++  AD  IR+ +    S+LI R+L TI    +A+P YL+    PL   +L 
Sbjct: 136 LSEEYDDPAVSGADVTIRIGE-TPDSNLIARRLGTIRRVTFASPAYLEARGRPLRPADLK 194

Query: 188 KHNLI 192
           +H+ +
Sbjct: 195 QHDCV 199


>gi|330816554|ref|YP_004360259.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327368947|gb|AEA60303.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 317

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 17/199 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            ++  L  F+ VAR+GS +  AE+LH+SQ +++R+I  LE  +G+ LF R  RG+ LTE 
Sbjct: 1   MNFTHLLAFHEVARAGSISAGAERLHVSQPAVTREIRELEARLGLVLFDRLPRGVALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    S ++   +T + EL+E +   +G LRI  +  LG  L+   +  F   +P I
Sbjct: 61  GRLLFDHASRIFALADTAESELRELAGLGAGHLRIGASNTLGVYLVPALIARFSARHPRI 120

Query: 123 QIQLILDN--------KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP-HY 173
            I L + N        +D+  ++ + +       P  ++ L  R +    +   AA  H 
Sbjct: 121 TIDLTVTNTEGVEAGLRDLSFTLGFVEG------PFDTTVLDARPIGADEIAVVAAAGHP 174

Query: 174 LKNCREPLSIQELDKHNLI 192
           L   R  L+  +L +H +I
Sbjct: 175 LAGRR--LAPADLAEHAVI 191


>gi|330815242|ref|YP_004358947.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327367635|gb|AEA58991.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 327

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 119/261 (45%), Gaps = 8/261 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ LR F V+AR  S + AA  LH++Q ++S  +  LE ++G KL  R    + +T  
Sbjct: 14  LDWNLLRTFLVIAREQSVSRAAAHLHITQPAVSHALRRLEEQLGRKLVQRSGPRIDITRA 73

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+++  +  E+Y  +     +  E     SG++R+ T   +        L +F   YPDI
Sbjct: 74  GNEVREIAEEIYGSISRLASDEGEGGHYVSGQVRLITVSGVQSEAYDDFLADFHADYPDI 133

Query: 123 QIQL-ILDNKDIDISM--DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
             ++ ++ + D+  ++    A  A+ L + +  S + Q+  +      +    +    RE
Sbjct: 134 DFEVQVMRSADVPSALLQHTATAALSLNRHV-GSKIAQQLFMPQRYALFCGRRHPLFGRE 192

Query: 180 PLSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            LS+++L + N ++F GD +   +             G  R+      S   +M+  V G
Sbjct: 193 GLSVEDLREENFVSFAGDQLGASLSVLGVFRDQHGLAG--RVVATSA-SMAEVMRLIVAG 249

Query: 239 SGIALLPDYIVKDNPNLVRIM 259
            GI  LP+++ +      R+M
Sbjct: 250 FGIGSLPEHVGQAQVAAGRMM 270


>gi|300704172|ref|YP_003745774.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299071835|emb|CBJ43161.1| putative transcription regulator protein, Lys-R family [Ralstonia
           solanacearum CFBP2957]
          Length = 318

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 1/174 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AA++L L +SS+S  +S LE ++G++LF R  R L LT+ G
Sbjct: 5   DWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGVRLFERSTRRLRLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +     L   + E +  +  ++
Sbjct: 65  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMREHAGLR 124

Query: 124 IQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           I++ +  + ID ++  Y       R+P+  S ++ +++  +      AP  L+ 
Sbjct: 125 IEVDVAPRQIDPLAQGYDIMLTVPREPLPDSGMVAQRVFDLRRAVVIAPALLER 178


>gi|293604030|ref|ZP_06686442.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292817565|gb|EFF76634.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 207

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 2/195 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            DWD LR F  VAR+   + AA +L +  +++SR+I  LETE+   LF +  + G  LT+
Sbjct: 10  LDWDSLRYFLEVARTQRVSAAARKLGVEHTTVSRRIRALETELDTLLFEKSRSAGFVLTD 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   + T +  L       SG LRI  T   G  +L     +F   YP 
Sbjct: 70  DGQRLFVHAEQMESTVHTARENLSGIGQALSGHLRIGATEGFGSYVLTPLAADFQRRYPH 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    +  KL    +  Y  P YL       
Sbjct: 130 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCSKLCDYTLRLYGTPGYLARHAPIE 188

Query: 182 SIQELDKHNLITFGD 196
           +  +L +H  I + D
Sbjct: 189 TRADLARHTFIGYVD 203


>gi|260773296|ref|ZP_05882212.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           metschnikovii CIP 69.14]
 gi|260612435|gb|EEX37638.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           metschnikovii CIP 69.14]
          Length = 308

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 133/303 (43%), Gaps = 31/303 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQG 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  L     +L E S K  G L I+         L   L +F    PDI ++
Sbjct: 69  YFLDIKDIFSALAEATDKLLERSEK--GALTISLPPSFAIQWLVPRLADFNHQQPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + +     D  D AI   R   P +++  L Q  L+ +      +P  L   +  +
Sbjct: 127 IKAVDMEEGSLTDDVDVAIYYGRGNWPGLRADKLYQEFLIPL-----CSPALLVGPKPLV 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS------YLSIMQYC 235
           ++ +L +H L     L     +D+   A       E  +  L VN          ++Q  
Sbjct: 182 TLSDLARHTL-----LHDTSRKDWKQFAK------ENGLDSLNVNQGPIFSHSTMVLQAA 230

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G G+AL  + + +   D   LV   ++V+      Y    E   + G++  FR+++  
Sbjct: 231 AHGQGVALGNNVLAQPELDAGRLVAPFDEVLMTKNAFYVVCHEKQADMGRIATFRDWMLK 290

Query: 293 KAR 295
           KAR
Sbjct: 291 KAR 293


>gi|260597930|ref|YP_003210501.1| hypothetical protein CTU_21380 [Cronobacter turicensis z3032]
 gi|260217107|emb|CBA30885.1| hypothetical protein CTU_21380 [Cronobacter turicensis z3032]
          Length = 300

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 1/192 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+  L+VF  V    SF  A++ L +  S++SR I+ LE ++ ++L  R  R + LT+ 
Sbjct: 5   LDFKTLKVFIAVVEKESFVGASKLLEMPTSNVSRCIAQLEEKLSLQLIERSTRHMKLTQA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   LE T+ EL    ++  G LRI    + G  LL   + +F   YP++
Sbjct: 65  GHLLYSRAKPLLEALEQTETELTLRQMQLRGPLRICIPSESGPALLGSAIADFACQYPEL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I  + +    +   D  D AI + R  +  S  I R L+TI     AAP  ++    P 
Sbjct: 125 EISCVTNLSGFESLRDDLDVAIIITRGQMDDSDYIARHLMTIPCTIVAAPSVIQRYGTPS 184

Query: 182 SIQELDKHNLIT 193
            I++ ++   IT
Sbjct: 185 HIRQFEELPCIT 196


>gi|209551842|ref|YP_002283759.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537598|gb|ACI57533.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 297

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 130/304 (42%), Gaps = 41/304 (13%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   V+   SF  AA++L ++ S+IS  IS LE  +G++L  R  R +  TE+G  L
Sbjct: 8   QLAVLAAVSEHRSFRAAAKELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGRLL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    +++     ++++  KP+G LRI         LL   L +FL LYPDI +++
Sbjct: 68  LERLRPALEEIDIALEAVRDTRAKPAGNLRITAPRFASDLLLAPRLGDFLNLYPDITLEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++   DI  +  D  IRL + +++  +  +    +     A+P Y +   +P   ++L
Sbjct: 128 ANEDGFTDIVKEGFDAGIRLEESLEADMIAVKFSPHLTTVIAASPEYFERYPKPEHPRDL 187

Query: 187 DKHNLI----TFGDLIPKCMEDFNW---------LATVDRP--IGEPR-----ISCLQVN 226
             H  I    T G +       + W         +  VD P  + E R            
Sbjct: 188 VHHRCIKRRFTNGSI-------YRWEFEKDGQELVVAVDGPLVVSEDRLALLAALNGAGL 240

Query: 227 SYLSIMQY-CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +YL  M+    L SG             +LVR++ED   P    +  YP   +    L+A
Sbjct: 241 AYLFDMRVDAELASG-------------SLVRVLEDWCAPYSGPFLYYPTRRQMRPALRA 287

Query: 286 FRNF 289
           F +F
Sbjct: 288 FIDF 291


>gi|108809996|ref|YP_653912.1| LysR family transcriptional regulator [Yersinia pestis Antiqua]
 gi|108813551|ref|YP_649318.1| LysR family transcriptional regulator [Yersinia pestis Nepal516]
 gi|145600941|ref|YP_001165017.1| LysR family transcriptional regulator [Yersinia pestis Pestoides F]
 gi|153949296|ref|YP_001402762.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418594|ref|YP_001605225.1| LysR family substrate-binding transcriptional regulator [Yersinia
           pestis Angola]
 gi|165926702|ref|ZP_02222534.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165936460|ref|ZP_02225028.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010545|ref|ZP_02231443.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213891|ref|ZP_02239926.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167402189|ref|ZP_02307662.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167419062|ref|ZP_02310815.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426175|ref|ZP_02317928.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167467566|ref|ZP_02332270.1| substrate-binding transcriptional regulator, LysR family protein
           [Yersinia pestis FV-1]
 gi|170026109|ref|YP_001722614.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|294502347|ref|YP_003566409.1| LysR-family transcriptional regulator [Yersinia pestis Z176003]
 gi|108777199|gb|ABG19718.1| LysR-family transcriptional regulator [Yersinia pestis Nepal516]
 gi|108781909|gb|ABG15967.1| putative LysR-family transcriptional regulator [Yersinia pestis
           Antiqua]
 gi|145212637|gb|ABP42044.1| LysR-family transcriptional regulator [Yersinia pestis Pestoides F]
 gi|152960791|gb|ABS48252.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351409|gb|ABX85357.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis Angola]
 gi|165915576|gb|EDR34185.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165921325|gb|EDR38549.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990635|gb|EDR42936.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204866|gb|EDR49346.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166963056|gb|EDR59077.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167048370|gb|EDR59778.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054886|gb|EDR64688.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169752643|gb|ACA70161.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
 gi|262360428|gb|ACY57149.1| LysR-family transcriptional regulator [Yersinia pestis D106004]
 gi|262364377|gb|ACY60934.1| LysR-family transcriptional regulator [Yersinia pestis D182038]
 gi|294352806|gb|ADE63147.1| LysR-family transcriptional regulator [Yersinia pestis Z176003]
          Length = 327

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 138/292 (47%), Gaps = 10/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L  F  +    S + AA +L+++ SS SR ++ LE ++G+ L  R  R + LT+ G 
Sbjct: 20  YKHLENFIKIVECNSLSIAAHKLNITPSSTSRSLAQLEEKLGVVLLKRTTRSIVLTDAGD 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L     ++   L+ T +        P G+L+I  +I  G   L     ++     D+ +
Sbjct: 80  YLFHQARQLLLDLDETLVNTHSFYNHPQGQLKITCSIAFGVCHLMHLFSQYKETNSDVCL 139

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L+++ ++++ ++ D A+R+   I   +   R++ TI+     +  YL     P +I+
Sbjct: 140 SVDLNDQLVNLNEEHFDIALRITS-IPPPNFAIRRICTINWVYCGSKEYLMKRGVPATIE 198

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H+ +    + P   + + + +T    +     + +Q NS L ++   +   GI  L
Sbjct: 199 DLEQHDCL----VNPNVSDAWLYKSTEGESVPLKIKNTVQANSSLGLLHAALHHQGIVCL 254

Query: 245 PDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P Y++ D   +  LV I+ D       + +Y  Y  +  N  K+++F +F+ 
Sbjct: 255 PTYMLGDYITSGKLVPILLDYNAKDKEYGLYALYYPSKYNDPKIRSFIDFML 306


>gi|15799981|ref|NP_285993.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 EDL933]
 gi|168749122|ref|ZP_02774144.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168755824|ref|ZP_02780831.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168761915|ref|ZP_02786922.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168769625|ref|ZP_02794632.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168775429|ref|ZP_02800436.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168782622|ref|ZP_02807629.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168788542|ref|ZP_02813549.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|168799810|ref|ZP_02824817.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|195937757|ref|ZP_03083139.1| hypothetical protein EscherichcoliO157_15139 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807457|ref|ZP_03249794.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208816266|ref|ZP_03257445.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208822937|ref|ZP_03263255.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209400952|ref|YP_002268898.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217326312|ref|ZP_03442396.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254791435|ref|YP_003076272.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223631|ref|ZP_05937912.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255950|ref|ZP_05948483.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281170|ref|YP_003497988.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. CB9615]
 gi|12513056|gb|AAG54601.1|AE005204_11 putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|187769101|gb|EDU32945.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188016483|gb|EDU54605.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|188999842|gb|EDU68828.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189356865|gb|EDU75284.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189361291|gb|EDU79710.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189367676|gb|EDU86092.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189371620|gb|EDU90036.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|189377841|gb|EDU96257.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|208727258|gb|EDZ76859.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208732914|gb|EDZ81602.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208737130|gb|EDZ84814.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209162352|gb|ACI39785.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209745234|gb|ACI70924.1| hypothetical protein ECs0305 [Escherichia coli]
 gi|209745236|gb|ACI70925.1| hypothetical protein ECs0305 [Escherichia coli]
 gi|209745238|gb|ACI70926.1| hypothetical protein ECs0305 [Escherichia coli]
 gi|209745240|gb|ACI70927.1| hypothetical protein ECs0305 [Escherichia coli]
 gi|209745242|gb|ACI70928.1| hypothetical protein ECs0305 [Escherichia coli]
 gi|217322533|gb|EEC30957.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254590835|gb|ACT70196.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|290761043|gb|ADD55004.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. CB9615]
 gi|320192404|gb|EFW67048.1| Transcriptional regulator [Escherichia coli O157:H7 str. EC1212]
 gi|320638549|gb|EFX08257.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. G5101]
 gi|320644010|gb|EFX13090.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H- str. 493-89]
 gi|320649292|gb|EFX17843.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H- str. H 2687]
 gi|320662432|gb|EFX29821.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665358|gb|EFX32445.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326338840|gb|EGD62658.1| Transcriptional regulator [Escherichia coli O157:H7 str. 1125]
 gi|326343456|gb|EGD67220.1| Transcriptional regulator [Escherichia coli O157:H7 str. 1044]
          Length = 299

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 141/315 (44%), Gaps = 37/315 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA   +F+ AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPIFIAVAEESNFSKAAARLGVTRSAVSQGIRRLEDAFGTMLVMRTTRSVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLY 119
           E G +LH+  S     +E    E+    V P G LRIA T  + +  L G L   F    
Sbjct: 61  EAGERLHKSLSLPLSGIEAAFEEMVSDHV-PRGLLRIAVT-SIAEEFLSGPLIASFAAAN 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHY 173
           P + + +++ +++ DI     D  +RL + I+   +       QR++V       A+P Y
Sbjct: 119 PAVTLDIVVTDEEFDIVAAGYDAGVRLGEVIEKDMIAVPLTGRQREMVV------ASPSY 172

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSY 228
           L     P+  +EL  H  I +       +  + W         D  I EP+I+    N  
Sbjct: 173 LAANSTPVHPRELVNHKCIGWRQ--SPEVAPYRWPFEENGRAFDLAI-EPQITT---NDL 226

Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKL 283
             +++  + G GI +      +   ++  LV +++D +   P F +YF  P+      KL
Sbjct: 227 RLMLRLALAGGGITIATQETFRPYIESGKLVSLLDDFLPQFPGFYLYF--PQRRNIAPKL 284

Query: 284 KAFRNFIFLKARDWK 298
           +A  + +    ++W+
Sbjct: 285 RALIDHV----KEWR 295


>gi|83954347|ref|ZP_00963067.1| Transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83841384|gb|EAP80554.1| Transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 298

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 11/288 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +WD LR+F  VAR  S + A + L L  +++ R+++ LE  +   LF +   G  LT
Sbjct: 1   MMGNWDDLRLFLAVAREQSLSGAGKLLRLDPATLGRRMARLEKTMQAVLFVKSPSGYALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L          +     ++   S + +G++RI         LL       +   P
Sbjct: 61  EAGVQLLSRAEAAEQAMRQATADVVVPSDQLAGQIRIGAPDGCANYLLPQVCARLVADNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQ++   +  ++S   AD AI +  P  +  L+ +K+    +H  AA  YL      
Sbjct: 121 GLDIQIVALPRVFNLSRREADMAIGVSAPT-AGRLVVQKIADYQLHLAAADSYLAARPAI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            ++ +L  H L+ +   IP  + D   ++LA     +G  R+  L  NS    +     G
Sbjct: 180 RTVADLQGHRLVGY---IPDMIFDRELDYLAE----LGMTRVP-LASNSVSVQVNMIRQG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+ ++ D+ +   P + RI+   +  S   Y    E  +   +L  F
Sbjct: 232 GGVGIVHDFSLPATPGVTRILTGDVHLSRAFYLIRHEDDRRNLRLSRF 279


>gi|254563848|ref|YP_003070943.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254271126|emb|CAX27133.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           DM4]
          Length = 301

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 133/295 (45%), Gaps = 16/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RV   VA SG F  AA  L +S ++++R ++ LE  +G +LF R  R + LTE G +  
Sbjct: 7   MRVVVRVAESGGFAGAARALSMSPAAVTRAVAALEAVIGARLFIRTTRSVKLTEAGGRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +     S+  P+G L +   +  G+  +   + ++L  +P + ++ +
Sbjct: 67  EDCRRILAEIAEAEATAAGSTATPTGVLTLTAPVQFGRLYVLPVVTDYLARHPAVAVRAL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D  +R+   +  S L   ++ ++     AAP YL+    P + ++L 
Sbjct: 127 FLDRIVNLIEEGIDVGVRIGH-LADSGLTATRVGSVRRVVCAAPSYLERHGVPETPRDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H +I  G   P  + ++ +      P G   +S    L  N+  + +   + G GIA L
Sbjct: 186 DHAVI--GASNPGALPEWRF-----GPEGRTTVSVHARLVCNTVDASLAAALDGWGIARL 238

Query: 245 PDYIVKD--NPNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y V        +RI+  ED   P   ++   PE  +   K +AF +    + R
Sbjct: 239 LSYQVAPAVAEGRLRILLSEDEEAP-VPIHVVSPEGRRAPAKTRAFVDLAAARLR 292


>gi|163858809|ref|YP_001633107.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262537|emb|CAP44840.1| transcriptional regulator, LysR family [Bordetella petrii]
          Length = 306

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 134/302 (44%), Gaps = 20/302 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   L  F VVA  G F   A Q   S S++S  +  LET++G++L +R  R +  T
Sbjct: 1   MKPNLSDLNAFVVVAAKG-FRGGARQSGASASAVSEAVRRLETQLGVRLLHRTTRSVVPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +    ++E     +     +P+G LR+   I   + +L   +  FL  YP
Sbjct: 60  EAGQRLLERLAPALGEVEAALDVVNNFRERPAGTLRLNVPISAVRLVLPAIVPGFLAAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCRE 179
           DI + ++ D+  +D+  +  D  IR  + ++   +       +   A  AAP YLK    
Sbjct: 120 DIVLHVVADDNFVDVLAEGCDAGIRYDERLEQDMIAVPIGPRVQRFACAAAPGYLKRHGR 179

Query: 180 PLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDR---PIGEPRISCLQVNSYLSI-M 232
           P   +E+ KH+ + F     ++P       W  T  +    +  P    +Q  + + + +
Sbjct: 180 PRHPREILKHSCLRFRFHSGVMPA------WEFTRKKETLKLEPPARLIVQAGAAVDLAI 233

Query: 233 QYCVLGSG-IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRN 288
           +  V G+G I L  D++    D   L  ++ED   P+F+  F  YP        LKAF  
Sbjct: 234 ETAVAGTGMIYLFEDWLRPYLDRGELEPVLED-WWPAFSGPFLYYPGRRFVPAALKAFVA 292

Query: 289 FI 290
           ++
Sbjct: 293 YV 294


>gi|254224793|ref|ZP_04918409.1| D-serine deaminase activator [Vibrio cholerae V51]
 gi|125622856|gb|EAZ51174.1| D-serine deaminase activator [Vibrio cholerae V51]
          Length = 314

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 2/143 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AA++L L+ S+IS +I+ LE E+GIKLF R  R + LTE
Sbjct: 16  SFQLSKLHTFEVAARHNSFSLAADELSLTPSAISHRINKLEEEIGIKLFERTHRKVELTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +++    +  + L    I+++      SG L I +     Q  L   +  F  LYP 
Sbjct: 76  EGQRIYHSLQKTLNNLNQEIIDIKNGET--SGLLTIYSRPSFAQCWLVPRIHAFKELYPS 133

Query: 122 IQIQLILDNKDIDISMDYADCAI 144
           I ++L+  N++I       D AI
Sbjct: 134 IDLKLLTGNENISFQGSGIDVAI 156


>gi|333009681|gb|EGK29131.1| hypothetical protein SFVA6_0523 [Shigella flexneri VA-6]
          Length = 214

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 7/210 (3%)

Query: 41  LETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATT 100
           LE ++G+ L  R  R L+LTE+G +  R    +  ++   + E+ E+   P G LRI   
Sbjct: 4   LEMKLGVSLLNRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAA 63

Query: 101 IDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160
             +  + L   +K F   YP++ + L+     I++     D AIR    +  SSL  R L
Sbjct: 64  TPVVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERKVDVAIRA-GTLTDSSLRARPL 122

Query: 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPR 219
              +    A+P Y+    +P +I +L +H  + F +  P  +    W +A  D  + E +
Sbjct: 123 FNSYRKIIASPDYISRYGKPETIDDLKQHVCLGFTE--PASLN--TWPIACSDGQLHEVK 178

Query: 220 ISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
              L  NS  ++ Q C+ G+GIA L DY++
Sbjct: 179 YG-LSSNSGETLKQLCLSGNGIACLSDYMI 207


>gi|296136483|ref|YP_003643725.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
 gi|295796605|gb|ADG31395.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
          Length = 291

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 9/175 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  V  +G+ + AA  L +  +++SR++  LE E+ + L  R  R   LT  
Sbjct: 2   FDWENLRHFLAVGNAGTLSGAARSLRVDHATVSRRLVALEDELQVVLVERLPRACRLTPV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQ---ESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G ++     E    +E+T   ++    ++  P SGK+ ++    L  + L   + +F   
Sbjct: 62  GIQVF----EQAKAMESTAFAIERHTRATQAPLSGKVTLSAPPVLATHFLATRMADFQTT 117

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
           YP IQ+ +  + + + +S   AD A+RL +P +SS+++ R++  +    YA+ HY
Sbjct: 118 YPGIQLSVTAEARQVSLSRREADVALRLIRPKESSNVV-RRIGRMRFALYASHHY 171


>gi|89075779|ref|ZP_01162167.1| transcriptional activator AmpR [Photobacterium sp. SKA34]
 gi|89048511|gb|EAR54086.1| transcriptional activator AmpR [Photobacterium sp. SKA34]
          Length = 302

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 122/272 (44%), Gaps = 29/272 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR FY  A+  SFT AA +L ++Q+++S+Q+  LE+ +G+ LF R  RG++LT +G K
Sbjct: 20  NSLRAFYASAKHQSFTKAANELFVTQTAVSQQVKTLESRLGVTLFNRMPRGISLTSEGVK 79

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+ V  +V+ +L      L+    +    + +  T  L  N L   L +F   YP+I ++
Sbjct: 80  LYPVVEKVFLELTVNLDNLKFGCTRELVNIGVVGTFAL--NWLLPRLNDFYHHYPNIDLR 137

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHYLKNCRE 179
           +  +N   D   +  D  IR  +               H H       + AP +   C  
Sbjct: 138 ISTNNNIADAFSEGLDYVIRFGRG--------------HWHGTEAELLFNAP-FTPLCNP 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            ++ +     +L+ +  L    + ++  WL          +   +  +S + +++  + G
Sbjct: 183 SIASRLHHPQDLLGYTLLQSYDVHEWEQWLKQASLKTNISKSQTITFDSTILMVEAAIKG 242

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVY 270
            GIAL P  I  +     +I++  I   F +Y
Sbjct: 243 YGIALAPPQIFHE-----KIIQRQIVQPFNIY 269


>gi|221368957|ref|YP_002520053.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
 gi|221162009|gb|ACM02980.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
          Length = 314

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 120/266 (45%), Gaps = 33/266 (12%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD +R+F  +AR G+   AA +L L  +++SR+I  +ET +G+ LF R   G  LT+QG
Sbjct: 31  NWDDIRLFLALAREGTLQGAARRLGLGVATVSRRIERMETALGLPLFLRRQTGHALTDQG 90

Query: 64  SKLHRVTSEVYHKLETTQIELQE------SSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           + L         + E  ++ LQE      + V+  G +R+A+   L   ++   L   L 
Sbjct: 91  AAL-------LPRAEAMELALQEMRREAGAQVEIRGLVRLASIESLVMPVVLPALGPLLA 143

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P + ++++     +++    AD A+R+  P +  +L  R+L  +    Y         
Sbjct: 144 ANPGLDVEVLWGTATVNLHRHDADLALRMVPP-ERGNLTVRRLAGMGFGLYGPAEGAAPA 202

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R             +T+ D  P       W A      G      L +N+  + ++    
Sbjct: 203 RH------------VTWPD-EPSLAVPLGWSAA----FGARTAPRLALNTLAAQVEAVRD 245

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVI 263
           G G+A+LP ++ +  P  +R++ +++
Sbjct: 246 GLGVAVLPHFLAR--PEGLRLLANLL 269


>gi|158423230|ref|YP_001524522.1| regulatory protein [Azorhizobium caulinodans ORS 571]
 gi|158330119|dbj|BAF87604.1| regulatory protein [Azorhizobium caulinodans ORS 571]
          Length = 301

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 135/299 (45%), Gaps = 13/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D   L  F  VAR+  F  AA     S S++S  +  +E ++G++L +R  R +  T
Sbjct: 1   MSIDLSDLGAFMAVARARGFRDAARVSGASPSALSDAVRRVEAQLGVRLLHRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L         ++E     +     +P+G LR+   +   + +L   + +FL  YP
Sbjct: 61  EAGARLMERLGPALGEVEAALDVVNGFRDRPAGTLRLNVPVSAARLVLPSLVPDFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSL-IQRKLVTIHMHAYAAPHYLKNCRE 179
           DI++++  ++  +D+     D  IR  + ++   + +     T      AAP YL     
Sbjct: 121 DIRLEITAEDTFVDLLAAGCDAGIRYDERLEQDMIAVPIGPRTQRFATAAAPAYLDRRGR 180

Query: 180 PLSIQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           P   ++L  H  +    + G ++    E    +  V+ P G P +  +   + L++ +  
Sbjct: 181 PAHPRDLLAHACLLARFSSGAMMAWEFERDGEVVRVE-PTG-PLLVSVGAATELAV-EAA 237

Query: 236 VLGSG-IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFI 290
           V G+G IAL  D++    D+  L  ++E    P F+  F  YP        L+AF +F+
Sbjct: 238 VAGTGIIALFEDWLRPHLDSGALEPVLE-AWWPRFSGPFLYYPGRRLVPAPLRAFVDFV 295


>gi|319784248|ref|YP_004143724.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170136|gb|ADV13674.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 300

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 128/293 (43%), Gaps = 16/293 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF    R  SFT A  +L ++Q+++S  + GLE ++G KLF R  R + LTE G + H  
Sbjct: 16  VFEAAGRLSSFTAAGRELGMTQAAVSYAVRGLEEQLGAKLFQRRHRQVLLTEAGERFHAD 75

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S     +  +  +L+  +    G + +A +   G   +   L++F    P I +++   
Sbjct: 76  VSLGLSHIRKSAEDLRLQAT--GGHVTLAASTAFGSFWMMPRLQQFRDELPGIDLRIQTA 133

Query: 130 NKDIDISMDYADCAIRLRKP-----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++D+DI  +     +R   P       S  L   ++  +   +YAA   L     P S  
Sbjct: 134 DRDLDIIAEGIPLGVRGGAPRDWPDYHSLPLADEEIFPVAGTSYAAKFGL-----PRSAA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H LI   +   +      W  +    + +     L++N Y  ++Q  + G GIAL 
Sbjct: 189 ELATHRLIHLEEPYREAASWDEWFQSAGANLSDT-ARGLRINDYGLVIQGVMEGQGIALG 247

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             ++ +    +  LV + + V+      Y  +P+  + +   +  R+++  +A
Sbjct: 248 WRHLAERLLASGLLVPVTDHVLKTGKAFYVVWPKNRELSDNARKVRDWLAAQA 300


>gi|206564027|ref|YP_002234790.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198040067|emb|CAR56048.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 301

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 95/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT+ G  
Sbjct: 6   DGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLTDDGQA 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +LE  + +L     +  GKLR++  +  G + +   + +    YP ++I 
Sbjct: 66  YYDRCVRALAELEAAEADLDCGRNEARGKLRLSVPLAFGHHCVTPIVLDLARTYPHLRID 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P S+ +
Sbjct: 126 VSITDRFVDLVEEGIDLAVRIGPLADSTSLAVRRLGTQYGSLGAAPSYLARYGTPQSLDD 185

Query: 186 LDKHNLITF 194
           L  H  I +
Sbjct: 186 LKNHRTIAY 194


>gi|26987397|ref|NP_742822.1| transcriptional regulator AmpR, putative [Pseudomonas putida
           KT2440]
 gi|148545941|ref|YP_001266043.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|24982054|gb|AAN66286.1|AE016257_2 transcriptional regulator AmpR, putative [Pseudomonas putida
           KT2440]
 gi|148509999|gb|ABQ76859.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 294

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 123/252 (48%), Gaps = 25/252 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V AR  +FTHAAE+LHL+Q ++S+QI  LE+++G+ LF R  RGL LTE+G    
Sbjct: 12  LRAFEVSARYLNFTHAAEELHLTQGAVSQQIRHLESQLGVALFKRLPRGLGLTEEGQSYL 71

Query: 68  RVTSEVYHKLETTQIEL-QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            V  +   +L     E+  +   +P   L++  ++      L   L +F   +P + I+ 
Sbjct: 72  PVVQDAISRLAVGTNEIFGQRQRRP---LKVRGSLSFLHFWLAPRLADFRRSHPQVDIRY 128

Query: 127 I--LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--REPLS 182
           I  L  K++D      D  IR     Q + +  ++L    +    AP  L  C  REP  
Sbjct: 129 ISNLWVKELDAE---DDLEIRWGSG-QWAGVEAQRLTRDMLVPVCAPALLAGCPLREPRD 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGS 239
           +  +   +++ + +          W   ++R +G  ++   S LQ ++ +S ++   LG 
Sbjct: 185 LARVPLLHVLGYEE---------GWGYWLER-VGADQVDSSSGLQFDTLVSTLRMAELGL 234

Query: 240 GIALLPDYIVKD 251
           G+AL    +V+D
Sbjct: 235 GVALARSSLVED 246


>gi|312963033|ref|ZP_07777519.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311282802|gb|EFQ61397.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 340

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 120/272 (44%), Gaps = 9/272 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLT 60
           S +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 35  SLNWDDLKFFLEVARTRKASVAAKRLAVDYTTVSRRISSLEVSLGTLLFEKSRTNGFVLT 94

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 95  AEGQRLLGYAEAIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFVTPQLSHFVDTYP 154

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL      
Sbjct: 155 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYKLQLYATQDYLDQHPPI 213

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +    E   +LA V         S   +  Y++  Q    G  
Sbjct: 214 QRPADLAEHPFISYVDDLAFSSE-LLYLANVVPGASASLRSTSVIAQYVAAQQ----GRS 268

Query: 241 IALLPDYIVKDNPNLVRIMED--VITPSFTVY 270
           +A+LP ++   +  L+ ++ +   IT  F +Y
Sbjct: 269 MAILPCFLAAQDSRLLPVLGEQIAITRQFWMY 300


>gi|239503556|ref|ZP_04662866.1| regulatory protein LysR:LysR, substrate-binding [Acinetobacter
           baumannii AB900]
          Length = 304

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 138/298 (46%), Gaps = 19/298 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTEQ 62
           + LR F   AR  SF+ AA++L+++ +++ + +  LE  +G  LF+R   G   L  TE 
Sbjct: 8   NALRAFEASARHKSFSAAAKELNVTPAAVGQLVRTLEDWLGFPLFHRQTNGKNRLVATEL 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              +       + KL     +L++ S+  SG L IA +    +  L   +  F   YPDI
Sbjct: 68  TESVLPDIRAGFDKLTLALEKLKQDSL--SGVLNIAVSPAFAEKWLLPRIDHFQKQYPDI 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L ++ K +D      D  +R  +  Q   L   KL+   ++   +P +L      L+
Sbjct: 126 DIRLDINLKTVDFLEQKVDVGVRYGQG-QWQGLEAVKLMDEEVYPVCSPAFLNEHSSLLT 184

Query: 183 IQELDKHNLITFGDLIPKCMEDF----NWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVL 237
             +L   N+    DL  +  + F    +WL +V   +G+  IS  +Q+NS  +++Q  + 
Sbjct: 185 PSDLK--NITLIHDLSMEKHQQFPGWQSWLKSVG--LGDINISRGMQINSSSAVLQAAME 240

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+AL    + + +     L+R+   +  + SF+ Y  Y     N  K+K   ++ F
Sbjct: 241 GHGVALARSIMAQKDIQTGRLIRLFPQIHFSSSFSYYLVYRPEYANLPKVKICLDWFF 298


>gi|153002176|ref|YP_001367857.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151366794|gb|ABS09794.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 295

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 123/275 (44%), Gaps = 23/275 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F +VA+  SF+ A+EQL  S+  +SR +  LE E+G +L +R  R +++TE G  L+
Sbjct: 6   LQSFMLVAKMHSFSAASEQLGASKGLVSRHVKSLEDEMGCQLLHRTTRRVSMTEAGQALY 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+          +Q+ +    G L+     +LG+ LL   L +F+  YP ++++L 
Sbjct: 66  GKACEIERLANEAGRLVQDLTQDSCGTLKFTAPTELGKKLLSPMLLQFIAAYPQVKLELC 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +    D+     D A+R      S +L+ R L  I  H            E     +L 
Sbjct: 126 FEQNIQDVEFGKFDLALR-TSIAHSDNLVARYLGRIR-HVLVVAPAHPAAAEVRHPDDLR 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-----CLQVNSYLSIMQYCVLGSGIA 242
            + L++ G+          W   V  P+    ++      L  ++Y +     + G+GIA
Sbjct: 184 HYRLLSSGET--------QW---VFEPLAGDSLTLTFEPALCSSNYATTHLLTLSGTGIA 232

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEAL 277
            LP Y+V+++     I +  +T     + CYP  L
Sbjct: 233 SLPYYLVEED-----IAQHKLTLLVPQWQCYPHEL 262


>gi|27363784|ref|NP_759312.1| DNA-binding transcriptional activator GcvA [Vibrio vulnificus
           CMCP6]
 gi|37679062|ref|NP_933671.1| DNA-binding transcriptional activator GcvA [Vibrio vulnificus
           YJ016]
 gi|320157190|ref|YP_004189569.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           vulnificus MO6-24/O]
 gi|27359900|gb|AAO08839.1| Glycine cleavage system transcriptional activator GcvA [Vibrio
           vulnificus CMCP6]
 gi|37197804|dbj|BAC93642.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319932502|gb|ADV87366.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           vulnificus MO6-24/O]
          Length = 307

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 137/298 (45%), Gaps = 21/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  + +KLF R  R L LTE+G  
Sbjct: 9   NSLRVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLSLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  L     ++ E S K  G L I+         L   L +F    PDI ++
Sbjct: 69  YFLDIKDIFSALAEATDKVLERSEK--GALTISLPPSFAIQWLVPRLADFNAKEPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + D     D  D AI   R   P +++  L Q  L+ +      +P  L   +   
Sbjct: 127 IKAVDMDEGSLTDDVDVAIYYGRGNWPGLRADKLYQEYLIPL-----CSPSLLLGNKPLE 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSG 240
           S+Q+L +H L     L     +D+   A  +  + E  ++   + S+ + ++Q    G G
Sbjct: 182 SLQDLKRHTL-----LHDTSRKDWKQFAK-ENGLDEVNVNQGPIFSHSTMVLQAAAHGQG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +AL  + + K   +   L+   ++++    + Y    E   + G++  FR+++ + AR
Sbjct: 236 VALGNNVLAKPEMEAGRLIAPFDEILLSKNSFYVVCHEQQADMGRIARFRDWMLVTAR 293


>gi|86146076|ref|ZP_01064402.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85836023|gb|EAQ54155.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 306

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 23/293 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F+ + +   FT AA+ L++S S IS+Q++ LE  +GIKL  R  R LTLTE G   ++ 
Sbjct: 3   IFHALIKHEGFTSAAKSLNVSVSHISKQVALLEDSIGIKLVQRTTRSLTLTEAGEVFYQH 62

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++++ ++  Q+++       SG  RI  +   G   +   + +   LYP ++I++ L 
Sbjct: 63  CEQLFNTVKAAQMDMDSQRDDISGIFRIGLSQSFGTLHIIPAIDQLRQLYPQLRIEVHLF 122

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+  +  D  I   + +    + QR L        A+P YL     P    +L  H
Sbjct: 123 DYKVDMIEERLDLWITNNEDLPEGYIAQR-LADSQFVVAASPDYLIKAGTPHVPSDLIDH 181

Query: 190 NLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLGSGIAL 243
           N      LI +  E D+   A  +   G+  +S      Y      ++    V G G+A 
Sbjct: 182 NC-----LIYRSRERDYTSWAFDN---GQENLSVKVAGDYSVDLAEAVRDAAVSGWGVAY 233

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTV------YFCYPEALKNTGKLKAFRNFI 290
           L  Y+VK+     ++++  + P +        Y  YP       KL A   FI
Sbjct: 234 LATYLVKEEFRTGKLIQ--VLPEWRASQLMPFYAVYPSRKNMPKKLSAVIEFI 284


>gi|254248982|ref|ZP_04942302.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875483|gb|EAY65473.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 313

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 12/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+ G  
Sbjct: 10  NRLAIFVSVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTDAGRV 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++    E     +   +    G LR++  ID G  ++   +      +P + ++
Sbjct: 70  FYDACRDIVRATEAALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAVVALRDRHPALAVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +++ +D+  D  D AIR+ + +  S+    +L T      A+P ++     P     
Sbjct: 130 LVANDRVVDLVADNLDVAIRIGR-LADSNYRAVQLGTYEKWLVASPAFVARHGLPRDPDA 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
           L     +    L      D +     D   G   + C+     N+  +     + G G  
Sbjct: 189 LAALPFVMLSSLPRPHTLDLD-----DARGGRASVRCVAPVVSNTATACRAIVLAGGGFG 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LL D+   D+     LVR++    T    ++  YP     + K++AF
Sbjct: 244 LLTDFSTADDVAAGRLVRLLPGWRTAPAGIHAVYPSTRLPSPKVRAF 290


>gi|107027789|ref|YP_625300.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693501|ref|YP_839034.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897163|gb|ABF80327.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651501|gb|ABK12141.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 314

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 136/279 (48%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDTGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +ET + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQNARAIIESVETAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R++    +   A+P Y++   +P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGNSRVRILASPDYIEAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
             +++LDKH L+ F    P+ +  +  L T       EP +     +S  ++ Q  + G+
Sbjct: 180 RKVEDLDKHTLLGFTQ--PESLNVWPILGTDGEAYRIEPDVYS---SSGETLRQLALEGT 234

Query: 240 GIALLPDYIVKDNPNLVRIME-------DVITPSFTVYF 271
           G+  L D++   +    R+++       DV  P   VY+
Sbjct: 235 GVVCLSDFVTAQDREAGRLVQVLARHTLDVQQPIHAVYY 273


>gi|312144349|ref|YP_003995795.1| transcriptional regulator, LysR family [Halanaerobium sp.
           'sapolanicus']
 gi|311905000|gb|ADQ15441.1| transcriptional regulator, LysR family [Halanaerobium sp.
           'sapolanicus']
          Length = 294

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 76/126 (60%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS +++  +VFY VA++ SF+ AA++L++SQS++S+ I  LE E+  +LF R+ + ++LT
Sbjct: 1   MSLNYELYKVFYFVAKNLSFSKAAKELYISQSAVSQNIKNLEKELKTRLFIRNTKEVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L       ++ ++T +  ++E +    G++ I     + ++ L   L EF  LYP
Sbjct: 61  QAGEVLFEHIEPAFNLIKTGEKNIKEINALKRGEIHIGANDTIAKDYLLPYLNEFHKLYP 120

Query: 121 DIQIQL 126
            I IQ+
Sbjct: 121 QIHIQI 126


>gi|239832555|ref|ZP_04680884.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239824822|gb|EEQ96390.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 310

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 125/280 (44%), Gaps = 18/280 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    +S + +    +AT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAM-ASAQSTSSFSVATLPTFGTRWLMPRIPDFVEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE 179
           + +   +   D      D AI   +P+ + +    L    +V +     A P  LK  R 
Sbjct: 129 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHATCTFLCSEVIVPV-----ACPSLLK-ARH 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + +EL+   L+      PK    +     V+   G+      + + +  ++   + G 
Sbjct: 183 PSAPEELENEPLLHLATR-PKMWAQWFESCGVE---GQSAYRGHRFDQFSMVIGAALAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           G ALLP Y+++    +  LV + E  +      Y   PE 
Sbjct: 239 GFALLPLYLIEQELRSGELVMLFEKPMRTENEYYLVVPEG 278


>gi|229011689|ref|ZP_04168872.1| Transcriptional regulator, LysR [Bacillus mycoides DSM 2048]
 gi|228749647|gb|EEL99489.1| Transcriptional regulator, LysR [Bacillus mycoides DSM 2048]
          Length = 305

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 138/286 (48%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   ISIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      ++H++E  +  +Q+ +    G L I + + +   LL   + +F   YP
Sbjct: 67  EAGRVLLSHCKTIFHEVEQARSAIQDLNGLHHGSLTIGSLLTVVNYLLPPAILDFNKQYP 126

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   +I   +  +  D  I    P+Q   ++   L    +       +    
Sbjct: 127 NIELSVLGLRTGEIREKLLQNELDMGITFL-PVQDKEIVSIPLYKSELTLVVPTSHSLTE 185

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R+ +SI+EL  + LI         +LI    ++FN+     +PI       L++++  S+
Sbjct: 186 RKYVSIEELQDYPLILLPKNFYLTELITSHCQNFNFKP---KPI-------LEISTMESL 235

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP    D++  ++   ++I     TP+  +   Y
Sbjct: 236 IQMVAQGMGITVLPKPYIDFLQNEHIQAIKIENP--TPTIDIGLIY 279


>gi|89054405|ref|YP_509856.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88863954|gb|ABD54831.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 300

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 122/272 (44%), Gaps = 11/272 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR+F   AR+ S T A   L +  ++I+R+I+ LE   G  LF +  +G  LTE 
Sbjct: 1   MNWDDLRIFLATARAESLTAARGSLRMDPATIARRIARLEGVAGAALFLKSPQGYRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L          L      L  S+   SG +RI         LL          +P +
Sbjct: 61  GLRLLAHAEAAEAALSRGMGALTGSAEDLSGTIRIGAPDGCATYLLPQVCARIADAHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +Q++   + +++S   AD AI + +P ++  L   +L    +   A+  +L     P S
Sbjct: 121 DLQILALPRIVNLSRREADLAITVSQP-KTQRLRGERLSDYRLSLAASTDWLDAHGVPTS 179

Query: 183 IQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + +L    +I +   IP  + D   ++L+     +G  R+  L   S    +Q    G G
Sbjct: 180 VNDLKDMRMIGY---IPDMIFDAELDYLSA----LGVTRVP-LASTSVSVQLQMARAGGG 231

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFC 272
           +A++ D+ +   P LVR++ + ++ + T +  
Sbjct: 232 LAVVHDFALPTAPELVRVLPNKVSLTRTFWLT 263


>gi|53716871|ref|YP_105904.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|52422841|gb|AAU46411.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
          Length = 305

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 25/294 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 23  NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFALFMRHARGLTLTVEGEQ 82

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +      +   +  F   +PD+ +Q
Sbjct: 83  LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MRWVLPRIMRFQREHPDLHVQ 137

Query: 126 LILDNK-DIDISMDYADCA----IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    + D+D   +  D A    I     + +  L   +L  +      AP  L+    P
Sbjct: 138 MTTTWRHDVDFQSEPFDAAIVYGISPGPDVAAVPLFDERLTPV-----CAPDLLEG--RP 190

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
           L+ +++L  H L+  T      +   D+   A VD P   P    L + +  +   + V 
Sbjct: 191 LARVEDLACHTLLHPTRDHRDWRRWLDYAGAAGVD-PDRGPSFDSLDLATSAATQGFGVA 249

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LG       D+  +    L   ++ V       YF YPE++    K++ F  ++
Sbjct: 250 LGDLTLSEEDFAAR---RLAMPLDIVQRTGARYYFVYPESVAQQQKIRRFSAWL 300


>gi|21232104|ref|NP_638021.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767769|ref|YP_242531.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113850|gb|AAM41945.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573101|gb|AAY48511.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 310

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 135/289 (46%), Gaps = 13/289 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GS T AA  L LS +  S+++  LE ++G++L +R  R +  T +G +L   
Sbjct: 9   LFLRVLDLGSITAAAHSLDLSVAVASQRLKRLERDLGVRLLHRTTRRMHPTAEGQQLAAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L+    +L+ES+    G LR+  +   GQ  +   L EF   +P ++I   L 
Sbjct: 69  GRVLVDDLDALADDLRESAQDVGGTLRVTLSASFGQQYISPLLPEFQARHPRLRISAHLS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+     D AIR+  P++ S L+ R++        A+P YL+    P + +EL +H
Sbjct: 129 DDLVDLVKQGFDLAIRI-GPLEDSGLVARRIAPNRRTLSASPAYLQRHGTPRTPEELAQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
             +    L+ +      W  T+  P G     R+     +++  +M+  V+ G GIA+  
Sbjct: 188 AGVL---LMGRDGRQDVW--TLQTPEGGQVRVRMQSRFESNFGELMRDAVIAGQGIAVHS 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + + ++     LV +M D   P+  +    P       +++AF +F+ 
Sbjct: 243 YWHIAEDLRAGRLVEVMPDYPPPTSQISAVMPARQLQPPRVRAFVDFLL 291


>gi|15966016|ref|NP_386369.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307314901|ref|ZP_07594492.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307317509|ref|ZP_07596948.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15075286|emb|CAC46842.1| Probable transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306896667|gb|EFN27414.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306898938|gb|EFN29586.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 302

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 122/256 (47%), Gaps = 13/256 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+F   +L+ F  VA  GS T AA+ L +SQSSI+  I  LET++G++LF RH RGL +T
Sbjct: 1   MAFTLRQLQYFVAVAEQGSVTRAAQNLSISQSSITEAIKELETDLGVELFDRHPRGLAIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +  R  +++   +   +    +S  +  GKL +  T  +   +L   L  +    P
Sbjct: 61  HNGHQFLRHATKILADVSDARRSFSDSREERGGKLNLGVTSLVAGYVLSDLLARYRRACP 120

Query: 121 DIQIQLILDN----KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYL 174
            +++  I DN    + + I  +  D A+ +   ++    +Q +++    +    P  H L
Sbjct: 121 GVEVSAIEDNGSYLEHLLIGGEL-DVAVMVISNLRDRMALQAEILETSPYRLWLPIGHPL 179

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            +  + +S++++ +  LI     + +  E+   L T    +G       +  S  ++   
Sbjct: 180 VSA-DIISVEDIAREPLIML--TVDEIEENTGKLLTA---LGARPHVAFRTRSVEAVRSL 233

Query: 235 CVLGSGIALLPDYIVK 250
              G+GIALLPD + +
Sbjct: 234 VATGAGIALLPDLVYR 249


>gi|325524885|gb|EGD02826.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 259

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 130/260 (50%), Gaps = 7/260 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDSGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +ET + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQDARAIIASVETAEEQMLARRDMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R++ +  +   A+P YL    +P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGSSRVRILASPAYLDAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
             +++LD+H L+ F    P+ +  +  L   D P   EP +     +S  ++ Q  + G 
Sbjct: 180 RKVEDLDRHTLLGFTQ--PESLNVWPLLGADDEPHRIEPDVRS---SSGETLRQLALEGV 234

Query: 240 GIALLPDYIVKDNPNLVRIM 259
           GI  L D++   + +  R++
Sbjct: 235 GIVCLSDFMTAQDRDAGRLV 254


>gi|190576463|ref|YP_001974308.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014385|emb|CAQ48033.1| putative transcriptional regulator-LysR family [Stenotrophomonas
           maltophilia K279a]
          Length = 321

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GSF+ AA +  L    ++  ++ LE E+ ++LF R  R L LT +G+
Sbjct: 4   FDDLQLFVRTAALGSFSQAAREADLLPGQVAAAVARLERELDLRLFVRTTRSLRLTGEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  EV   L   +  +Q    +  G L+++   D G+NLL   L  F   +P +++
Sbjct: 64  LYLPYAQEVLATLREGRARVQGEDAELHGTLQLSAPSDFGRNLLLPWLTAFRAAHPRLRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA-PHYLKNCREPLSI 183
            L L ++  D+  D  D AIR+      +S +   L+  +    AA P YL+    P+ +
Sbjct: 124 HLRLSDEVADVFRDPVDVAIRIGH-FDDASYVALPLLEGNRRVLAASPDYLQRRGTPVRL 182

Query: 184 QELDKHNLITF 194
            EL +H+ + +
Sbjct: 183 DELREHDCLVY 193


>gi|167572797|ref|ZP_02365671.1| transcriptional regulator [Burkholderia oklahomensis C6786]
          Length = 322

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 126/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   DNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P + ++
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGAPTTPED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L KH  +          E   W   ++R  G+  +     +  Q N   ++      G G
Sbjct: 185 LAKHVCLRLDTPASPGGE---W--RLERDDGDETVYELPPAPFQANVPDALSVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F
Sbjct: 240 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTF 288


>gi|149914737|ref|ZP_01903267.1| Transcriptional regulator, LysR family protein [Roseobacter sp.
           AzwK-3b]
 gi|149811530|gb|EDM71365.1| Transcriptional regulator, LysR family protein [Roseobacter sp.
           AzwK-3b]
          Length = 298

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 125/274 (45%), Gaps = 11/274 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD L++F  VAR+ S + A   L +  +++ R+I+ LET++G+ LF +   G  L+
Sbjct: 1   MDVQWDDLKIFLAVARAESLSGAGRILKVDPATVGRRIARLETDLGVPLFAKSPMGYALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L      V   +E    E+   S   +G++RI         +L           P
Sbjct: 61  DAGQRLMGHAVRVEQAVEGVAEEMAGRSGGMTGQIRIGAPDGAANFVLPQVCARIAEENP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++Q++   +  +++   AD  I +  P      +QR +    +H  A+  YL+   + 
Sbjct: 121 DLEVQIVALPRVFNLTRREADMVIAVSPPTAGRLSVQR-ITDYKLHLAASRRYLRAHPKI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLG 238
             +++L  H ++ +       ++D  +   +D  R  G  R++ L  NS    + +   G
Sbjct: 180 TRLEDLRGHRVVGY-------IQDMIFDKELDYLREAGIERVN-LASNSVSVQINWVRQG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC 272
            GI ++ D+ +     +V+++ +  + + + Y  
Sbjct: 232 GGIGVVHDFSIPFVRGVVKLLPEAFSLTRSFYLV 265


>gi|78044765|ref|YP_361195.1| LysR family transcriptional regulator [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996880|gb|ABB15779.1| transcriptional regulator, LysR family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 313

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 4/189 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F VVA + + + AA++LH+SQ +IS QI  LE EVG+KLF R  +G+ LT+ G   
Sbjct: 5   QLVIFKVVAETKNISTAAKRLHMSQPAISLQIQSLENEVGVKLFERSNKGVRLTKAGEIF 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   ++  K+       +++  +  GKL I  T+ +G+ +L   L  F  LYP+I++++
Sbjct: 65  YQKVQDIIDKIHEAYELARDAGGESKGKLYIGATLTIGEYVLPKLLAYFYKLYPEIEMRV 124

Query: 127 ILDNKDI---DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            + N D    ++     D  + +   I    L   K     +      H++   +E L +
Sbjct: 125 KIANTDTIYHELVEKTIDIGL-IEGTIDDEELKVEKFWEDELVVVVPYHHIWGSKERLPV 183

Query: 184 QELDKHNLI 192
            EL K  +I
Sbjct: 184 AELLKERII 192


>gi|326797187|ref|YP_004315007.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|55375968|gb|AAV49995.1| putative LysR-type transcriptional regulator [Marinomonas
           mediterranea]
 gi|326547951|gb|ADZ93171.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 288

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 133/294 (45%), Gaps = 30/294 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V AR  +FTHAA +L L+Q ++S+QI  LE  +GI LF R  RGL+LT +G    
Sbjct: 12  LRAFEVSARHLNFTHAAAELCLTQGAVSQQIRLLEDHLGIPLFKRLPRGLSLTSEGQSYL 71

Query: 68  RVTSEVYHKLETTQIEL-QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ- 125
            V  +   +L     EL  + + KP   ++I  ++    + L   L +F L YP+I I+ 
Sbjct: 72  PVVQDAISRLAAATSELVNKDAHKP---IKIHGSLSFFVHWLAPKLTDFKLRYPNIDIRY 128

Query: 126 ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP-- 180
              L +D  D D  ++     IR         L+ R+L    +    AP  L     P  
Sbjct: 129 TTSLWVDEVDDDHELE-----IRWGNG-DWPGLVVRRLTWDTLFPVCAPSLLDTIDTPSD 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L+ Q L    L T G       E +  WL+ V     +P    +QV++ L+ ++   LG 
Sbjct: 183 LAAQTL----LHTIG-----YEEGWGYWLSMVGEQTVDP-AKGMQVDTLLAALRMAELGL 232

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+AL    + +D      LV + +  +  S + Y  +    + +  +  F  ++
Sbjct: 233 GVALARSSMAEDLIAEGKLVELFDKRLNASESFYLVHKTGTELSDDVNVFLEWL 286


>gi|325525291|gb|EGD03144.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 323

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 127/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGK+RI     LG++ +  ++  +    PD+ ++
Sbjct: 65  YFERARSILAEIDYANAEARNALLRPSGKMRIHAMTGLGKSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  +
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTPQTPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L  H  +          E   W   ++R  GE  +     +  QVN   ++      G G
Sbjct: 185 LPNHVCLRLDTPASPASE---W--RLERSDGEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F
Sbjct: 240 IACIALYTVLDDLREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|293416168|ref|ZP_06658808.1| hypothetical protein ECDG_03770 [Escherichia coli B185]
 gi|291432357|gb|EFF05339.1| hypothetical protein ECDG_03770 [Escherichia coli B185]
          Length = 298

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 124/261 (47%), Gaps = 9/261 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+    F ++A  GS++ AA +  +S+S +SR+++ LE  +G++L  R  R L LT  
Sbjct: 2   IDWNDYYYFALIADEGSYSQAALRAGVSKSVLSRRMAALEERLGVRLIQRTTRRLALTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  + E  +  +  +   P G LR++  + + +      + EF+  +P  
Sbjct: 62  GEQFAVECRALMAQEERARAVVMAAQESPQGMLRVSAPVFMAETWFGEFVSEFIARWPLA 121

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++QL+  N+ +D+  +  D A +     +  S+L  +KL T      A+  +L    +  
Sbjct: 122 KVQLLAINRPVDMVAEGIDIALVTASGALTDSTLHYKKLHTQADILVASSQWLARHPQVK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +I++L+  +    G L         W L   ++ I     + LQ N+   ++Q  + G+G
Sbjct: 182 AIEDLNHVD----GILRLANNGGSQWQLINGEQEITLQPEARLQSNNLRVMLQAVLGGNG 237

Query: 241 IALLPDYIVKD---NPNLVRI 258
           +ALLP +  K    N  LVR+
Sbjct: 238 VALLPQFACKQGLVNGELVRL 258


>gi|221210755|ref|ZP_03583735.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221169711|gb|EEE02178.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 343

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 93/184 (50%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  SGSF  AA ++ +++S++++ ++ LE  +G++L  R  R L LT++G   +   
Sbjct: 11  FVEVVESGSFAAAAVRIGVTRSAVAKVVARLERRLGVRLLQRTTRQLNLTDEGHLYYEQC 70

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L  T+  L     +PSG+LRI+  +  G+  +   ++  +  +P +++ +   +
Sbjct: 71  RRLLAELGDTEAALDAGRREPSGRLRISVPVLFGRQCVAPVMRRLVERHPRLEVDMSFSD 130

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D+  D  D A+R+     +++L+ R+L    M   A+P YL     P     L  H 
Sbjct: 131 RVADLIDDGFDIAVRIGVLADTTALVARRLGVQRMGICASPAYLDRHGWPSGPDALASHV 190

Query: 191 LITF 194
            I +
Sbjct: 191 GIPY 194


>gi|186893691|ref|YP_001870803.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|186696717|gb|ACC87346.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
          Length = 327

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 137/289 (47%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +    S + AA +L+++ SS SR ++ LE ++G+ L  R  R + LT+ G  L 
Sbjct: 23  LENFIKIVECNSLSIAAHKLNITPSSTSRSLAQLEEKLGVVLLKRTTRSIVLTDAGDYLF 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+ T +        P G+L+I  +I  G   L     ++     D+ + + 
Sbjct: 83  HQARQLLLDLDETLVNTHSFYNHPQGQLKITCSIAFGVCHLMHLFSQYKETNSDVCLSVD 142

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ ++++ ++ D A+R+   I   +   R++ TI+     +  YL     P +I++L+
Sbjct: 143 LNDQLVNLNEEHFDIALRITS-IPPPNFAIRRICTINWVYCGSKEYLMKRGVPATIEDLE 201

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ +    + P   + + + +T    +     + +Q NS L ++   +   GI  LP Y
Sbjct: 202 QHDCL----VNPNVSDAWLYKSTEGESVPLKIKNTVQANSSLGLLHAALHHQGIVCLPTY 257

Query: 248 IVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++ D   +  LV I+ D       + +Y  Y  +  N  K+++F +F+ 
Sbjct: 258 MLGDYITSGKLVPILLDYNAKDKEYGLYALYYPSKYNDPKIRSFIDFML 306


>gi|209550676|ref|YP_002282593.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536432|gb|ACI56367.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 302

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 133/295 (45%), Gaps = 19/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +RVF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T  G 
Sbjct: 4   FDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTLDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E  +     +  +P G LR+     L ++ L  +L  FL  YP+I+ 
Sbjct: 64  AYYQRCLSILADIEDAEGAF--AGARPKGLLRVDVHGTLARHFLLPSLPSFLQTYPEIEF 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R       S +I R++  +     A+P Y+     P    
Sbjct: 122 YMSEGDRLVDLVREGIDCVLR-GGTTGDSDMIIRRVAMLDEITLASPDYVAAHGLPQHPD 180

Query: 185 ELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
            L  H +I F     G  +P    +F    TVD  + E  I + + VN+  S +    +G
Sbjct: 181 RLAGHRMIGFRSSGTGSQLPL---EF----TVDGVVREISIPATVAVNAAESYISAARMG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI  +P Y  + +     L+ +++D       V   YP   + + +++ F +++
Sbjct: 234 LGIIQIPRYHAEKDLAEGTLIHVLKDFPPTPTPVSVLYPRNRQLSPRVRVFIDWL 288


>gi|70733759|ref|YP_257399.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68348058|gb|AAY95664.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 296

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 135/292 (46%), Gaps = 19/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +    SFT AA+ L+L +++++  ++  E  +G +L  R  R +  T  G   +
Sbjct: 7   MKVFVRIYERSSFTLAADDLNLPRATLTHTLNQFEAWLGTRLLERSTRRVRPTLDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  ++  +  +V+P G+LR+     L ++ +   L EF+  YP I++ + 
Sbjct: 67  PRCVQLLAELEEAELAFR--TVEPHGRLRVDMHGTLAKHFVIPRLGEFMQRYPQIELAIS 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+  +  DC +R    ++ SSLI R++  +     A+P YL    EP S+ EL 
Sbjct: 125 EADHFVDLVAEGVDCVLRAGN-LEGSSLIARRVANLQQVTCASPAYLARYGEPQSLDELG 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS------GI 241
            H  + +          F +L        E ++  + ++  LS+    + G+      GI
Sbjct: 184 AHRAVNYVSRTATRSFPFEFLV-------EGQVREVAIDGALSVFGAQIYGASALAGLGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P Y V    +  ++  I+     P+  V   YP +   + +++ F +++
Sbjct: 237 IQCPRYHVARQIEQGSMREILCHTPPPAMPVSVVYPHSRHMSPRVRVFVDWL 288


>gi|206563836|ref|YP_002234599.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039876|emb|CAR55851.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 290

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FD D+LR F  VA +GS T AA  LHLSQS++S Q+  LE+  G+ LF R  RG+  T 
Sbjct: 3   GFDLDQLRTFAAVADAGSLTAAAPLLHLSQSTVSEQVRKLESRAGVPLFVRSKRGVEPTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS+L +    +    E    EL+  ++K  G+LR+A T     N + G L      YP 
Sbjct: 63  AGSRLLQHARRIVALNEAAFDELRGQAIK--GELRVAITDYYRTNEVAGMLARLRECYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRL 146
           + +  +   K ++I   +A   I L
Sbjct: 121 LSLH-VSAMKSVEIEAAHARGQIDL 144


>gi|170702225|ref|ZP_02893128.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170132860|gb|EDT01285.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 304

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 123/285 (43%), Gaps = 9/285 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +R+F  V  +GS + AA  L + QS++S +I  LE+ +G+KL +R+AR L+ T  G 
Sbjct: 7   YAAMRIFVRVVETGSISTAARDLGMGQSTVSERIDRLESHLGLKLLFRNARALSCTTDGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +    +ET    + +   +  G +RI     LG+ +L   L +    +PD+ I
Sbjct: 67  VFYANCKKALESMETA-FSIGKCHREVRGTIRIGAPQALGEIVLPPVLTDIRNRFPDLNI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSI 183
           +L+L++K ID +    D ++RL    Q   +     + I  H   A+P YL    E    
Sbjct: 126 ELLLNDKVIDPATAGVDLSLRLMP--QQDDVRYPNFIGIAPHVLVASPRYLGQFPEITKP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L  H  +    +        N +   +  +  P    L VN +    +  + G G ++
Sbjct: 184 EMLADHPFLWVCGVYNS--RQLNLIRADETRVSVPLNITLTVNHWRPAREQLIEGFGFSV 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           L   +  D   +  L  I+     P   ++  +P       K KA
Sbjct: 242 LQQRVCLDAIADGRLREILPSYRVPRLVLHVVFPGTGAVPPKTKA 286


>gi|153009895|ref|YP_001371110.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561783|gb|ABS15281.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 294

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 114/253 (45%), Gaps = 8/253 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   AR  S T AAE+L L+  ++SRQI  LE ++GI+LF+R  R + LTE+GS   
Sbjct: 11  LKAFEATARRLSMTLAAEELCLTHGAVSRQIKTLEDDLGIRLFHRMTRKIELTEEGSLFF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +L      L++ S     +L ++T +      L   L   +  YP+  IQL 
Sbjct: 71  SAVTRLLAELSREAETLRQKS--DDTQLVVSTGVSFASKWLTQRLHRLVARYPEFDIQLE 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + + D+D +    D AIR      + +  +R ++   +    +P YL+      S ++L 
Sbjct: 129 VTDADLDFTRGKVDAAIRYGTGHYAGASSER-IMNETVSPVCSPLYLERVAVISSPRDLL 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+    L        NW A    P  + R       S    +   + G GIAL    
Sbjct: 188 QCQLLHENGLKANWQ---NWFALAGMPAIQTRGQGFSHGSM--AIDAAIRGEGIALGRSV 242

Query: 248 IVKDNPNLVRIME 260
           ++ ++    R++E
Sbjct: 243 LISEDLAASRLVE 255


>gi|115361160|ref|YP_778297.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286488|gb|ABI91963.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 297

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VAR GSF  AA +LH++  ++ +QI  LE   G+ LF R  RG+ LT++G+ 
Sbjct: 5   NALRAFDAVARHGSFAGAAAELHVTHWAVGKQIRLLEDWFGLPLFDRRPRGVVLTDEGAV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L    S  +  L T  + L+ +++  + SG +R+   +      L   L +F   YPDI 
Sbjct: 65  LLNDVSHAFEHLGTAVVRLRHNTLAHRISGVVRVNVPMSFAFCWLLPRLADFHSRYPDID 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV 161
           +++   ++ +    D  D  +R   P Q + ++ R L+
Sbjct: 125 VRVSTTSRKLRYVADAFDIGVR-SGPEQGAGVVSRPLM 161


>gi|28901377|ref|NP_801032.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835972|ref|ZP_01988639.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260362931|ref|ZP_05775800.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260880218|ref|ZP_05892573.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260895335|ref|ZP_05903831.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260901160|ref|ZP_05909555.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28809924|dbj|BAC62865.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149750726|gb|EDM61471.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308085643|gb|EFO35338.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092697|gb|EFO42392.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308109358|gb|EFO46898.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308112297|gb|EFO49837.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 309

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 137/297 (46%), Gaps = 26/297 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALNVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  + +  +   +EL  E   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQSIAMVNAAQQA-VELSAEEHAEPTGALTVAAPEAFLNSVLQPFVLPFLQRYPKIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + +ID+     D A +L  KP    +L+ +++   ++   A+P YL     P    +
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDKP--DENLVLKEISKTNLVLCASPDYLAQRGMPEHPTQ 189

Query: 186 LDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L++H+ I   +     +      E F+ +A   R           VN     +     G 
Sbjct: 190 LEQHDCIYLAENDKDNIWSFFKEEAFHSIAVSGR---------YAVNHSQMRLNGVKAGL 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  D++VK   +   +V ++ D +  S     V   Y +      +L+ F  F+
Sbjct: 241 GIGIFHDFVVKEALERGEVVEVLSDWMIKSNYHGAVAMQYAQTKYMPARLRVFIGFV 297


>gi|206578506|ref|YP_002237463.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|290508591|ref|ZP_06547962.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206567564|gb|ACI09340.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|289777985|gb|EFD85982.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 299

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 6/242 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + L +F   A  GSF+ AA +     + +S  I  LET + I+LF R  R L LT +
Sbjct: 2   FRLEDLTLFVRAAALGSFSDAAREAGQQPAQVSAAIKRLETILNIRLFARSTRSLRLTPE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       +++   LE    ++Q    +  G L+IA   DLG+NLL    ++F   +P +
Sbjct: 62  GETWLPYATQMLDTLEAGLQKIQTPDDEVRGMLQIAVPSDLGRNLLLTLFRDFRQRHPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPL 181
           +++L+  ++  D+  D  D A R       +S I   +   +     A+P ++    EP 
Sbjct: 122 RLRLLFSDQLTDVFKDPVDVAFRYGNN-DDASFISLPVAPENRRVLVASPEWIARHGEPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           +++EL +HN + +   I +      W  ++D  + + ++S  +  +    I +  V G G
Sbjct: 181 TLEELSQHNALIY---ILRGRPFDRWSLSLDGVVQQQKVSGTVMSDDAEVIRRLAVAGEG 237

Query: 241 IA 242
           IA
Sbjct: 238 IA 239


>gi|330809120|ref|YP_004353582.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377228|gb|AEA68578.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 291

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 12/238 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VA +     A+    +S++++SR+I+ LE ++G++L  R ARGL LTE G  L    
Sbjct: 9   FTLVATNEGLGKASRASGISKATLSRRIADLEEQLGVRLIERSARGLKLTEAGELLLSRA 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                ++       +E    P G+LR+A  +   Q  + G    F   YPD+ I++I ++
Sbjct: 69  EGPLAEVVEAMAAAKEGVSTPRGRLRVAAPVLFSQLAMGGIGAAFCAAYPDVTIEVISED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D AIR+  P   S L+ R      +   AAP   +    P +I+ +    
Sbjct: 129 RVVDLVEEQFDVAIRI-NPSPDSDLVGRCFAKDRLVVVAAPGLPRPA--PGAIRSVPGVV 185

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           + +F        E  +W       I EP I  L+ +S+L I    + G G AL+P  I
Sbjct: 186 MSSF--------EPTHWTLDGGSLILEP-IPRLRFSSFLMIRDAAIAGGGAALIPQSI 234


>gi|299534177|ref|ZP_07047528.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298717824|gb|EFI58830.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 309

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 136/288 (47%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  V  +GSFT AA++L ++++ +S+Q++ LE E    L  R  R +  T+ G   
Sbjct: 18  RLAYFAAVVETGSFTAAADRLGITKAVVSQQVARLEREFHTTLLTRTTRKVVPTDAGRIF 77

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++  + +  +      EL E + +PSG LR+   +D G   +   + EF   YP  ++  
Sbjct: 78  YQRCASILKEAGDAFDELGEVAAEPSGTLRLTAPLDYGITAVVPAITEFTRHYPQCKVDA 137

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  ++ +D+     + AIR+   +   ++  R++ +      AAP   +   +    Q +
Sbjct: 138 VFSDQPLDLMSGQVELAIRVGW-LSHLNVQARQIGSFRQLLVAAPSLRRQVTQLKQPQHI 196

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +   +    L   C   F+      + +   P IS   +++ L++ +    G+G+++LP
Sbjct: 197 SELPFVANTALREPCNWSFSRSELECQSVTVHPAIS---LDATLAVREAVRHGAGLSVLP 253

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D+ V D+     L++++     PS  V+  +P A     K+KAF + +
Sbjct: 254 DFAVADDLKSGALIQVLPSWSLPSGGVHAVFPTARFRPAKVKAFVDLM 301


>gi|170691236|ref|ZP_02882401.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143441|gb|EDT11604.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 300

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 141/297 (47%), Gaps = 20/297 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F +VAR  +   AA +L ++  ++S++++ LE  +G++L  R  R L+LT +G    
Sbjct: 7   LNLFALVARHRNLAAAARELGVTPPAVSKRLAQLERRLGVRLMNRTTRRLSLTPEGELYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  +L   +  + +S  +P+G LR+  +   G+  +   + EF+  YP I+I L 
Sbjct: 67  SNGSRILDELSELEHLVMQSRGEPTGLLRVNASFGFGRARIAPAVSEFVTRYPAIKILLH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ + +  +  D  IR  + +  + +  R L+       A+P Y+     P    +L 
Sbjct: 127 LTDRPMSLQDEGFDLGIRFGE-VPDARINARLLLENRRMVCASPGYVARHGRPSVPHDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGI 241
           +H  I          E+ +   T     G+ R   ++V+  LS      ++ + + G GI
Sbjct: 186 RHACIVL-------RENESAYGTWHFSRGK-RSETVKVDGALSSNDGGVVLHWALEGRGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLK 293
            +   + V+ +     LV +++D   P   ++  Y E  + + +L+AF +F+  FL+
Sbjct: 238 VVRSQWEVERHLARGELVTLLDDWALPDANIHAIYLERNQLSVRLRAFVDFLGEFLR 294


>gi|167839604|ref|ZP_02466288.1| transcriptional regulator [Burkholderia thailandensis MSMB43]
          Length = 322

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 125/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   DNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEIDHANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P + ++
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPTTPED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSG 240
             KH  +          E   W   ++R  G+  +  L     Q N   ++      G G
Sbjct: 185 FAKHVCLRLDTPASPGGE---W--RLERDDGDETVYALPPAPFQANVPDALSVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F
Sbjct: 240 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTF 288


>gi|157146433|ref|YP_001453752.1| hypothetical protein CKO_02192 [Citrobacter koseri ATCC BAA-895]
 gi|157083638|gb|ABV13316.1| hypothetical protein CKO_02192 [Citrobacter koseri ATCC BAA-895]
          Length = 303

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 123/304 (40%), Gaps = 35/304 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W     F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE 
Sbjct: 9   FAW-----FVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEV 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + +  Q  +    V+P G +++   + L    +   L +F+  YPD+
Sbjct: 64  GQTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDV 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +QL   N+ +D+  +  D AIR+R +P + S L+ R L       +A+P  ++    P 
Sbjct: 124 SLQLEATNRRVDVVGEGIDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPALVQRMGNPS 183

Query: 182 SIQELDK------------HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229
           S  EL              H    FG    +    F            PR   L     L
Sbjct: 184 SPAELHHWPGLSLASGKHIHRWELFGPQGARAEVHFT-----------PR---LITTDML 229

Query: 230 SIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           ++ +  V G G+  LP  +VKD      LV ++E        ++  +P        ++A 
Sbjct: 230 ALREAAVAGVGLVQLPVLMVKDQLAAGELVALLEGWEPRREVIHAVFPSRRGLLPSVRAL 289

Query: 287 RNFI 290
            +F+
Sbjct: 290 VDFL 293


>gi|153216789|ref|ZP_01950613.1| D-serine deaminase activator [Vibrio cholerae 1587]
 gi|124114123|gb|EAY32943.1| D-serine deaminase activator [Vibrio cholerae 1587]
          Length = 314

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 77/148 (52%), Gaps = 12/148 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AA++L L+ S+IS +I+ LE E+GIKLF R  R + LTE
Sbjct: 16  SFQLSKLHTFEVAARHNSFSLAADELSLTPSAISHRINKLEEEIGIKLFERTHRKVVLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQES-----SVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           +G +       +YH L+ T   L +      + + SG L I +     Q  L   +  F 
Sbjct: 76  EGQR-------IYHSLQKTLNNLNQEITDIKNGETSGLLTIYSRPSFAQCWLVPRIHAFK 128

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAI 144
            LYP I ++L+  N++I       D AI
Sbjct: 129 ELYPSIDLKLLTGNENISFQGSGIDVAI 156


>gi|170737222|ref|YP_001778482.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819410|gb|ACA93992.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 313

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 136/279 (48%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDTGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +ET + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQNARAIIESVETAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R++    +   A+P Y++   +P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGNSRVRILASPDYIEAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
             +++LDKH L+ F    P+ +  +  L T       EP +     +S  ++ Q  + G+
Sbjct: 180 RKVEDLDKHTLLGFTQ--PESLNVWPILGTDGEAYRIEPDVYS---SSGETLRQLALEGT 234

Query: 240 GIALLPDYIVKDNPNLVRIME-------DVITPSFTVYF 271
           G+  L D++   +    R+++       DV  P   VY+
Sbjct: 235 GVVCLSDFVTAQDREAGRLVQVLARHTLDVQQPIHAVYY 273


>gi|50083687|ref|YP_045197.1| LysR family transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49529663|emb|CAG67375.1| putative transcriptional regulator (LysR family) [Acinetobacter sp.
           ADP1]
          Length = 299

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 133/291 (45%), Gaps = 15/291 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +  +F  VA+  SF+ AA +L L +S+++  I  LE    ++LF R  R ++LT+ G ++
Sbjct: 7   QFEIFIEVAKRESFSEAALRLDLPRSTVTAAIQNLEASYKVRLFQRTTRRVSLTQDGKRI 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +    +  +  +Q       G +++     +   ++   + +F   YP I+IQL
Sbjct: 67  LPECQNLLADYQLLEQMIQTHHQDYQGIIKVDMPSRISHQIVVPAIGDFFQQYPHIRIQL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +   ++     DC +R+   +++SSLI + +  + M   A+P YL+    P  +++L
Sbjct: 127 HSSDHLTNLVEQEVDCVVRV-GILENSSLIAKTVGHLSMVNCASPTYLQTFGVPQQLKDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL 243
            +H L+ + + +      F +        G+  I     L VN+  + +Q    G GI  
Sbjct: 186 HQHQLVNYQNGVGDQQGTFFY--------GDQYIKLNTRLSVNNTEAYIQAARAGLGIIQ 237

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +P Y V  +     LV I++D + PS  +   YP       +L  F +++ 
Sbjct: 238 VPYYDVYQDLLSGRLVEILKDDVCPSLPLNVLYPNRHYIPRRLDVFMSWLI 288


>gi|119383058|ref|YP_914114.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119372825|gb|ABL68418.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 294

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 129/310 (41%), Gaps = 47/310 (15%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR  SFT AAE+L ++Q+++S QI  LE  +   LF R  RG+ LTE G+   
Sbjct: 9   LRAFEAVARHLSFTRAAEELGMTQAAVSYQIRLLEERLATPLFLRKPRGIVLTETGALFA 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R T + +  L     +    SV     L I+T        L   L +F + +P++ ++L 
Sbjct: 69  RPTIDAFDMLREAYADPSADSVS---TLSISTVPTFAGAWLSPRLGKFQMNHPNLAVRLE 125

Query: 128 LDNKDIDISMDYADCAIRLRK------------PIQSSSLIQRKLVTIHMHAYAAPHYLK 175
             +  +D   +    AIR  +            PI+ + ++  +L   H           
Sbjct: 126 TSDNLVDFGREDITVAIRAGEGGWPGVEEHCLMPIEYTPMLSPELAKKH----------- 174

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLS 230
             REP  +  L   + +           D NW      A VD     PR   L +++ L 
Sbjct: 175 ELREPADLLNLPLLDRV-----------DPNWAVWMREAGVDFWESPPR-PGLTLSTDLH 222

Query: 231 IMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
             +  + G G+ALL     +      +L++    V     + +  YP+  +N   ++ FR
Sbjct: 223 EARAALEGYGVALLTPRFFRFELATGSLIQPFPLVAQNGRSFWLVYPKGRRNRPAIRKFR 282

Query: 288 NFIFLK-ARD 296
            F+  + ARD
Sbjct: 283 AFLLDEIARD 292


>gi|262195285|ref|YP_003266494.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262078632|gb|ACY14601.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 297

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 2/184 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SF  AAEQ+ +S +++S+ +  LE E+G+ L  R  R + L+ +G       
Sbjct: 11  FVYAARHKSFRRAAEQIGVSPAAVSKAVQRLEDELGVVLLNRTTRRVRLSREGELYLARC 70

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E   +++  +  L E+   P G+L ++    LG  LL   L  F   YPD+++ L + +
Sbjct: 71  EEAMAQMQAGRDLLAEAQRAPVGELSVSLPPVLG-PLLVARLPRFTERYPDLRLHLRVSD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +   +  D  D A+R+   +  S+L+ R++++      AAP YL     P   ++L +H 
Sbjct: 130 RISRLVDDGVDVALRM-GALDDSTLVARRVLSPRWVTLAAPAYLARHGTPGRPEDLAEHA 188

Query: 191 LITF 194
            I F
Sbjct: 189 CIRF 192


>gi|90579488|ref|ZP_01235297.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90439062|gb|EAS64244.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 313

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 1/189 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  S SF+HAA++L ++ S +SRQIS LE E+ ++L  R  R  +LT  G + +
Sbjct: 13  IAAFVTVVESESFSHAAKKLGMTPSGVSRQISRLEKELQVQLIKRSTRSQSLTIAGQEAY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  + +       +      G L IA+       +LQ  L EF+  YP +Q+++ 
Sbjct: 73  QYGKNILQQAQDVVNIASKQKQDIEGILTIASPKAFCCQVLQPLLLEFVDTYPKLQLKVQ 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +K ID      D   RL    Q ++L+ ++L T  +   A+P+YL+    P   ++L 
Sbjct: 133 VTDKPIDPLYHDVDVVFRLTNEPQ-NNLVAKQLATNDLVLCASPYYLEKKGTPTHPKQLA 191

Query: 188 KHNLITFGD 196
           +H+ I  G+
Sbjct: 192 QHDCIYLGE 200


>gi|254254397|ref|ZP_04947714.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124899042|gb|EAY70885.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 323

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 14/241 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT A  +L ++Q+++S+Q+  LE  +G  LF R  RGL LT++G  
Sbjct: 11  NALRAFESSARHLSFTRAGLELSVTQAAVSQQVRSLEERLGCALFTRLPRGLALTDEGRA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+ + ++ET   +      +    L +  T  +G   L   LK F   +P ++++
Sbjct: 71  LLPVLSDAFSRIETVLKQFDGGRFREVLTLGVVGTFAIG--WLMPRLKRFGDTHPFVKLR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N  +D++ +  D AIR  +    ++  +R L+   + A  AP   +   +P    +
Sbjct: 129 LRTNNNVVDLAAEGLDFAIRFGEGNWPATRNER-LLDAPLTALCAPEIARRVAQP---AD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L+       +      WL   +    EP  ++    +S   +++  + G+G+AL 
Sbjct: 185 LASKTLL-------RSYRPAEWLGWFEAAQLEPWAVNGPVFDSSRLMVEAAMQGAGVALA 237

Query: 245 P 245
           P
Sbjct: 238 P 238


>gi|83943212|ref|ZP_00955672.1| Transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
 gi|83846220|gb|EAP84097.1| Transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
          Length = 298

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 11/288 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +WD LR+F  VAR  S + A + L L  +++ R+++ LE  +   LF +   G  LT
Sbjct: 1   MMGNWDDLRLFLAVAREQSLSGAGKLLRLDPATLGRRMARLEKTMQAVLFVKSPSGYALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L          +     ++   S + +G++RI         LL       +   P
Sbjct: 61  EAGVQLLARAEAAEQAMRQATADVVVPSDQLAGQIRIGAPDGCANYLLPQVCARLVADNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + IQ++   +  ++S   AD AI +  P  +  L+ +K+    +H  AA  YL      
Sbjct: 121 GLDIQIVALPRVFNLSRREADMAIGVSAPT-AGRLVVQKIADYQLHLAAADSYLAARPAI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            ++ +L  H L+ +   IP  + D   ++LA     +G  R+  L  NS    +     G
Sbjct: 180 RTVADLQGHRLVGY---IPDMIFDRELDYLAE----LGMTRVP-LASNSVSVQVNMIRQG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+ ++ D+ +   P + RI+   +  S   Y    E  +   +L  F
Sbjct: 232 GGVGIVHDFSLPATPGVTRILTGDVHLSRAFYLIRHEDDRRNLRLSRF 279


>gi|219848810|ref|YP_002463243.1| LysR family transcriptional regulator [Chloroflexus aggregans DSM
           9485]
 gi|219543069|gb|ACL24807.1| transcriptional regulator, LysR family [Chloroflexus aggregans DSM
           9485]
          Length = 301

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 112/254 (44%), Gaps = 16/254 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   LR F  VAR    T AA +LH++Q ++S+QIS LE E+GI LF R  R L LTE 
Sbjct: 1   MELRHLRYFEAVARHSHVTRAAAELHIAQPALSKQISQLERELGITLFDRVGRSLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      V  ++E  +  + E     +G++ I     +G +LL   L  F   YP I
Sbjct: 61  GEALLPYARAVLAQVEEARAAMAERVGLKAGRVAIGAPPTVGAHLLPPLLTAFHQRYPGI 120

Query: 123 Q-------IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
                   IQ +LD  +  ++ D A  A+    P+   +L    L+   +    +PH+  
Sbjct: 121 TLRLHEAGIQSLLDLLESGLT-DLAVVAL----PVSDEALTVTPLLNEPLVLIVSPHHPL 175

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
             R  +++ EL     I    L P   E         R  G    + ++     +++++ 
Sbjct: 176 AGRNEVAMAELRNERWI----LSPASYELREATLKACRDAGFTPQTVMEGGETETLVRFV 231

Query: 236 VLGSGIALLPDYIV 249
             G GIAL+P   V
Sbjct: 232 AAGLGIALVPALAV 245


>gi|317402279|gb|EFV82860.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 319

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 140/319 (43%), Gaps = 44/319 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VA+  SF+ AA  L++  S++SR+I+ LE  +G++L  R+ R L LTE G+ 
Sbjct: 9   NDIALFVEVAKRKSFSLAARALNMPTSTLSRRINELERAIGLRLINRNTRRLDLTEAGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +      +LQ  S  PSG LR++    L   LL   +K+F   YP+++ +
Sbjct: 69  YMSRCQGLIDEARLAHEQLQALSGGPSGNLRVSMPYSLAIWLLPETIKDFTDRYPEVECE 128

Query: 126 LILDNKDIDISMDYA--------DCAIRLRK----------------PI-QSSSLIQRKL 160
                   D+SM  A        D  +R  +                P+ +S   + +KL
Sbjct: 129 F-------DLSMMTASDAQGTPFDIVLRFGRDGDYPSAAADNGNGAAPVPRSDGAVVQKL 181

Query: 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPR 219
           V++  + YA+  YL+   EP +  +L +H  L T  D         N   T   P+    
Sbjct: 182 VSLDNYLYASDRYLERFGEPKTPSDLMQHQCLRTTIDDAHSYWTLHNGKVTEQVPVS--- 238

Query: 220 ISCLQVNSYLSIMQYCVLGSGIALLP-----DYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
              L  N+      +  L   I  +P     D I+K N +L R++        ++Y  YP
Sbjct: 239 -GHLAANNMSIAGTFAGLDLAITRMPHCQALDPIIKRN-SLRRVLPGWSVDPISIYVVYP 296

Query: 275 EALKNTGKLKAFRNFIFLK 293
            +++   K +AF +FI  K
Sbjct: 297 SSIQ-PAKTRAFMDFIRPK 314


>gi|296115616|ref|ZP_06834243.1| regulatory protein, LysR:LysR, substrate-binding [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977865|gb|EFG84616.1| regulatory protein, LysR:LysR, substrate-binding [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 298

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++  F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  T+ G +
Sbjct: 7   NEMTAFLTVARERSFTRAAAELGVTPSALSHTVRGLEERLGLRLLSRTTRNVATTDAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    +  ++      +     KP+G LRI  T    + + +  L EFL  YPDI ++
Sbjct: 67  LLRRVGPLLEQVSAELDLITSLREKPAGSLRITCTDAAIELVFRPKLAEFLRKYPDIHVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D   +DI  +  D  +R+ + ++      R           +P Y   C  P+  +E
Sbjct: 127 LSMDYAFVDIVSERFDAGVRIGESVEKDMCATRIGPDWRFCVIGSPDYFDRCPAPVMPRE 186

Query: 186 LDKHNLI 192
           L  HN I
Sbjct: 187 LGNHNCI 193


>gi|260220716|emb|CBA28552.1| hypothetical protein Csp_A07750 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 300

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 133/297 (44%), Gaps = 10/297 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA+SGSF+  A+++ +S++ ++R +  LE  +G +L  R  R +TLT+ G    
Sbjct: 7   MQVFVEVAQSGSFSATADKMDMSRAMVTRYVGELEQWLGARLLQRTTRSVTLTDAGESCL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R + ++   +E  + E         G+LR+  ++      +   + +FL LYP ++I L 
Sbjct: 67  RRSQQMLALMENVEEETSRHDGALRGQLRVTCSMSFAYAEMAAAISDFLALYPQLKIDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                +++     D AIR+       +LI R L        A+P YL     P +  +L 
Sbjct: 127 ASEGALNLVEARIDLAIRISAE-PDPALIGRVLAPCASVLVASPGYLAKHGIPENPADLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +++ +      +        +  +G    S    N   ++++  + G G+A+ P Y
Sbjct: 186 AHRCLSYANFGKSVWKLQRGEEHAEVHVG----SHFSANEATALLRAALAGGGVAMQPTY 241

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWKF 299
           +      + +L +++     P  ++Y  YP     +  ++A  +F+     +  WK 
Sbjct: 242 LASPHLHDGSLQQVLPQWQLPMMSIYALYPSRKHLSPAVRALLDFLVERFASEPWKL 298


>gi|209547704|ref|YP_002279621.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533460|gb|ACI53395.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 291

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V  R  +F  AAE+L +SQ ++++Q+  LE ++G+ LF R  RGL LT  G+ 
Sbjct: 12  NALRAFEVSGRRLNFRAAAEELGVSQGAVAQQVRALEDQLGLMLFQRLPRGLALTPHGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                ++V    +T          +P   + I+ T  +   LL   L EF    PD++++
Sbjct: 72  ---YLTDVTRAFDTLGEATGRLLARPDA-VTISVTPTVAAKLLIPRLAEFKSALPDVELR 127

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +      D   D  D A+RL R+P   +SL  R L    + A A+P+ +K    PL+  
Sbjct: 128 TVATEALSDFDRDQVDIAVRLTRRPF-PASLEARLLFRQELVAVASPYLVKGLPLPLTAD 186

Query: 185 ELDKHNLI 192
            L K  L+
Sbjct: 187 ALRKLPLL 194


>gi|145641379|ref|ZP_01796958.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae R3021]
 gi|145273922|gb|EDK13789.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae
           22.4-21]
          Length = 237

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 5/205 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE G  
Sbjct: 5   NAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGIM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P + I+
Sbjct: 65  YYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P +  +
Sbjct: 125 VEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLAT 210
           L+ HN    G L    M   NW+ +
Sbjct: 184 LEHHN----GLLYKNAMNQVNWVGS 204


>gi|312962505|ref|ZP_07776996.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311283432|gb|EFQ62022.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 307

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 18/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F   A  GSF  AA  L L+ +++ + ++ LE  +G++LF R  R LTLTE G 
Sbjct: 4   FGSIECFVRSAEGGSFAEAARHLSLTPAAVGKSVAKLEARLGVRLFQRSTRRLTLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       ++     L  +  +P G L+++     G   +   L  F+  +PDI  
Sbjct: 64  LFLEEVGGSLITIQNAVANLASAEGRPVGTLKVSMGTVFGNRYVVPLLGAFMARFPDISP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+     D AI     +    ++ RKL   H    A+P YL      L+ +
Sbjct: 124 DWHFDNRQVDLIGQGFDAAIGGGFEL-PQGVVARKLTPAHRVLVASPDYLAKRPPVLAPE 182

Query: 185 ELDKHNLITFGDLI--PKCMEDFNW-LATVDR---PIG-EPRISCLQVNSYLSIMQYCVL 237
            L + N    G LI  P+      W L +++R   P+  +P ++   ++   +       
Sbjct: 183 GLARCN----GILIRSPQTGRVRTWQLTSIERDHSPLSLKPGMT---MSDSEAACCASAQ 235

Query: 238 GSGIAL--LPDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIAL  +P  +   D+  +VR++ D       +   Y E     GK +AF +FI
Sbjct: 236 GLGIALVSMPMAVPFLDSGAVVRVLPDWYVDDGNISIYYAEHKLLPGKTRAFVDFI 291


>gi|238762162|ref|ZP_04623134.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238699509|gb|EEP92254.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
          Length = 285

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 84/180 (46%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V R GSF  AAE+L +S ++ S  I+GLE+ +  +LF R  R + LTE G         
Sbjct: 2   AVVRRGSFRAAAEELGISTTAASSAIAGLESRLQARLFNRTTRSVALTEAGKNFVERIGP 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
              ++     E+  SS +P+G LRI    + G    +  +  +L  YP +++++    + 
Sbjct: 62  ALMEIRRATEEVNSSSAEPTGILRINAPPESGPLFFERIVIPYLQCYPQMRVEIAEQARL 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           IDI  +  D  IRL + +    +       +   A A+P YL     P + + L +H  I
Sbjct: 122 IDIVAEGFDAGIRLAESVPQDMISVPLTSDLRQIAVASPDYLAKYGTPQTPEALKQHQGI 181


>gi|71278755|ref|YP_270218.1| DNA-binding transcriptional activator GcvA [Colwellia
           psychrerythraea 34H]
 gi|71144495|gb|AAZ24968.1| glycine cleavage system transcriptional activator [Colwellia
           psychrerythraea 34H]
          Length = 310

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 137/302 (45%), Gaps = 32/302 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AAE+L ++Q++IS QI  LE  +GIKLF R  R L LTE+G  
Sbjct: 9   NALRAFDASARQLSFTRAAEELFVTQAAISHQIKSLEDHLGIKLFMRKNRALLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +++  L      L     K  G + +++        L   L  F  L+ DI ++
Sbjct: 69  YYLDIKDIFTSLHEATERLLARGAK--GAITVSSQASFAIQWLVPRLTAFNSLHQDIDVR 126

Query: 126 L-ILD------NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--- 175
           +  +D       +D+DI++ Y     R R P    ++   KL T ++    +P  ++   
Sbjct: 127 IKAVDQPENSLTEDVDIAIYYG----RGRWP----NIHADKLHTEYLIPVCSPLLVQENA 178

Query: 176 -NCREP-LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIM 232
            N + P L++++L +H L     L     +D+  W   V           +  +S + ++
Sbjct: 179 ANGKPPLLTLEDLSEHTL-----LHDTSRKDWKRWFKQVGVKGANVNHGPIFSHSAM-VL 232

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           Q  + G GIAL    + K   D+  LV    DV+      +    E  K+ GK+ AFR +
Sbjct: 233 QAALHGQGIALAYSVLAKPDIDSGRLVCPFNDVLVSKNAYFIVCRENQKDIGKITAFREW 292

Query: 290 IF 291
           + 
Sbjct: 293 ML 294


>gi|85059934|ref|YP_455636.1| DNA-binding transcriptional activator GcvA [Sodalis glossinidius
           str. 'morsitans']
 gi|84780454|dbj|BAE75231.1| transcriptional regulator [Sodalis glossinidius str. 'morsitans']
          Length = 318

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 125/295 (42%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGKI 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  L     +LQ  S K  G L ++         L   L  F   +P I + 
Sbjct: 69  YYLDIKEIFSVLAEATRKLQSRSAK--GALTVSLLPSFAIQWLVPRLSSFNAAWPGIDVL 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +      L   KL   ++    AP          +  +
Sbjct: 127 IQAVDREEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCAPALFTGVYPLKTPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
           L  H L+              WLA   R +G  +++  Q    +    ++Q  + G G+A
Sbjct: 186 LIHHTLL-------HDASRREWLA-YSRQLGLSQLNVQQGPIFSHSAMVLQAAIHGQGVA 237

Query: 243 LLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L  + + +      R+     DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 238 LANNVMAQTEIEAGRLACPFNDVLESKNAFYLVCHDSQSEVGKIAAFRQWILARA 292


>gi|238796971|ref|ZP_04640475.1| Transcriptional regulator [Yersinia mollaretii ATCC 43969]
 gi|238719231|gb|EEQ11043.1| Transcriptional regulator [Yersinia mollaretii ATCC 43969]
          Length = 303

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 7/261 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ + + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVIDCGSITAAAEQRNQTTSGISRALSRLEKKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLSHARQILGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRI-GALRDSTIHARLLGASRVRILASPDYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
            SI EL  H+L+ F        E  N  +    P G    I  L  +S  ++    + G 
Sbjct: 180 QSIDELANHSLLGFTQ-----PESLNQWSLPHLPAGRASIIPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDNPNLVRIME 260
           GI  L D++ +++    R++E
Sbjct: 235 GIVELSDFMTREDQLAGRLVE 255


>gi|238028742|ref|YP_002912973.1| DNA-binding transcriptional activator GcvA [Burkholderia glumae
           BGR1]
 gi|237877936|gb|ACR30269.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 333

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF R+ R L LTE G +
Sbjct: 10  NALRAFEAAARHESFSRAADELFVTHGAVSHQVRALEEELGVPLFTRNGRRLALTEAGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R        L     E+     +P+ +L +++        +   +  F+  +P I ++
Sbjct: 70  YARQVRAALTMLMDATREVCAPD-RPN-RLIVSSLQSFAARWITPRIGSFIDRHPAIDLE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +   D S D  D AIR  +      L   KL         AP  L     P    +
Sbjct: 128 LKSTDSLTDFSRDDVDVAIRFGRG-HYPGLYVEKLFDEAFLPACAP-TLNGGVLPREPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L ++ L+   D + +   D   LAT    + EP+   L  +S   ++Q  + G GIAL+ 
Sbjct: 186 LARYPLLRSDDELWRPWFDAAGLAT----LTEPKRGLLFQDSS-QLVQAAIDGQGIALVR 240

Query: 246 DYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
             +        RI+   D++ PS +  YF  P +     +++AFR+++ 
Sbjct: 241 RSLAAAELEAGRIVRLFDILGPSPWHCYFVCPHSRIQLPRVQAFRSWLL 289


>gi|238020211|ref|ZP_04600637.1| hypothetical protein GCWU000324_00086 [Kingella oralis ATCC 51147]
 gi|237868605|gb|EEP69609.1| hypothetical protein GCWU000324_00086 [Kingella oralis ATCC 51147]
          Length = 285

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 130/291 (44%), Gaps = 21/291 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD L  F V+    + T AAE L +  S+ISR+I+ LE  +G++LF R  R   LT++G
Sbjct: 3   DWDDLHCFTVLVEKQTLTAAAETLGVQHSTISRRIARLEATLGLRLFDRIGRRYLLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +++     E+   +++     +E   +   ++ ++    + + LL  +   F   + +I+
Sbjct: 63  ARIRAQAQEIAVGMDSLLRTAREQR-EEMAEVVVSAPPLVAKGLLMPHFAAFARRHANIR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  D    ++   +AD A+R+ +P Q + L+ R+L  I    YA   YL++   P + 
Sbjct: 122 LVLQSDAHISNLHARHADIALRIVRPTQ-NDLVARRLRPIRYRFYAREGYLRS--RPRAE 178

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q                C+            +   R   L  N +  I       +GI L
Sbjct: 179 QAF-------------LCLNIGGAHGLWQEQLLAGRRIILACNDFDVIKAAVAAETGIGL 225

Query: 244 LPDYIVKDNPNLVRIMED-VITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           LPD+ V+     V++  +    P   +  +Y    E L+ + K++A  +F+
Sbjct: 226 LPDFYVRPADGFVQVAPNGAAQPEEFAADLYLVMHEDLRRSPKIRAVADFL 276


>gi|196232906|ref|ZP_03131756.1| transcriptional regulator, LysR family [Chthoniobacter flavus
           Ellin428]
 gi|196223105|gb|EDY17625.1| transcriptional regulator, LysR family [Chthoniobacter flavus
           Ellin428]
          Length = 308

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 123/257 (47%), Gaps = 26/257 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +LR F ++AR+GSFT  A++LHLSQS+IS  +  LE E+G +L  R  + + LT+ 
Sbjct: 12  LDSRQLRAFSILARTGSFTETAQELHLSQSAISHSMKALEQEIGCRLLDRMGKTVVLTQA 71

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +  ++E+ + +L       S +LRI  +    Q++L   L+EF   +P  
Sbjct: 72  GEQLLVSAQRILEEMESARAQLGHLGKWGSSRLRIGASTTACQHILPSVLREFKESFPQC 131

Query: 123 QIQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAA 170
            I +           L    ID++++      R  +P++   L   +LV  T  +H +A 
Sbjct: 132 AISIEPGDTPEMIEALRQHRIDLAVNLEP---RRDEPLEFRPLFTDELVFITSPIHPWA- 187

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
               K+ R  +S +++ + + I +G    K    F  + T  R       S L + +  +
Sbjct: 188 ----KSGR--VSREDIPRQHYILYG----KTSYTFQMIETYFRKEQIVLHSLLDLGNMEA 237

Query: 231 IMQYCVLGSGIALLPDY 247
           I +   LG GI++L  +
Sbjct: 238 IKELVKLGLGISILAPW 254


>gi|149375937|ref|ZP_01893704.1| Transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
 gi|149359817|gb|EDM48274.1| Transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
          Length = 306

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 130/286 (45%), Gaps = 16/286 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  KL+ F  V   GS   AA+ ++LSQ + SR IS LE E+ +KLF R  R L LT +
Sbjct: 1   MNIKKLKCFRAVVIHGSLVAAADVMNLSQPATSRLISTLEDELKLKLFKREKRRLVLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +R T ++   L+     +QE     +  LRI     L  +L+   L  F+  +PD 
Sbjct: 61  GKEFYRETEKILSNLDDLPRIVQEIKAGGTRTLRIVALARLANSLVSPALARFVKEHPDQ 120

Query: 123 QIQL-ILDNKDID--ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +  + +  ++DI+  ++  + D A+ L KP    S+IQR              +     E
Sbjct: 121 RFSVDVRGHRDIEQWVAGRHYDIAVALTKPCNHPSVIQRPFFDTDAMVMIPRGHPLEALE 180

Query: 180 PLSIQELDKHNLITFG-DLIPKC-MEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
            +S  ++ +H++I     L P+  ME+    A V        + C ++  S +   Q  V
Sbjct: 181 TVSPAQMAEHDIIALAPGLRPRFQMEEIFHAAGVA-------LDCKIETTSSVLACQMVV 233

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC--YPEALKNT 280
            G G+ ++ D +     +  R     ++P++ + F   +P   + T
Sbjct: 234 EGLGVTII-DRLAALAVDQSRFCLRPLSPNYRLQFVLLFPPGFEET 278


>gi|118587773|ref|ZP_01545183.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118439395|gb|EAV46026.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 296

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 126/300 (42%), Gaps = 33/300 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           + WD L+    +A +GS T AA  L ++ S++SR++S LE E+G +LF R   G T T  
Sbjct: 2   YSWDDLKFVLAIANAGSLTKAARSLGVTHSTVSRRLSALEEEIGARLFDRLPEGFTPTTA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKE----FLLL 118
           G +      E   ++ET  + L         +L     +   Q + Q  L E    F   
Sbjct: 62  GEE----AVEAARRMETEVLALDMRIAAKDAELEGPLRVTAAQLIFQVQLAEIVARFKER 117

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +P I + +   N+ + +    AD A+R+  KP    SL  R     +   Y +  + +  
Sbjct: 118 HPAIDVTMNAANEILSLHRREADIAVRVTDKP--DESLFGRLATGQNRCFYVSKDFARRY 175

Query: 178 RE-PLSIQELDKHNLITF---GDLIPKCM-EDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           RE  L          I F   G+ +P  M E F        P GE       V   +  M
Sbjct: 176 REAALETATSQAVPFIAFKWWGNKVPSEMRERF--------PNGE----VATVTDDMITM 223

Query: 233 QYCV-LGSGIALLPDYIVKDNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNF 289
              V  G GI  LP ++   +P+L+R+    + PS  F ++      LKN  +++ F  F
Sbjct: 224 HAAVRAGMGIGRLPCFLGDPDPDLIRL--PGVEPSRYFDIWILTHPDLKNVARIRTFLRF 281


>gi|312884850|ref|ZP_07744542.1| Transcriptional regulator, LysR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367502|gb|EFP95062.1| Transcriptional regulator, LysR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 305

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 133/296 (44%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+V   VA   S T AA  L +  ++ S  +  +E  +G +LF R  R L L+  G +
Sbjct: 4   EDLKVILKVAEFRSITAAATHLDMRTATASAAVKRVEASLGAELFVRTTRSLRLSTAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E    LE  ++ ++E      G++RIA + DLG+N++   L EF+  YP++ ++
Sbjct: 64  YLPQCEEALQMLEKAKLNIREDQGVIKGEVRIALSSDLGRNVITPWLDEFVCEYPEVSLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            ++ + +ID   D  D A+R   P   S++   K+  +     A+  YL     P    +
Sbjct: 124 CLISDSNIDFYRDPIDMALRYGSP-SDSNIYGFKICDVPKVLCASKAYLAEHGTPSKPHD 182

Query: 186 LDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +HN + +   D++    +  +   +V   +   R S    +    + ++CV G G+A+
Sbjct: 183 LLEHNALIYQLHDVLHDQWQFDHGEKSVKVKVKGNRAS----DDGDLVRRWCVSGRGLAV 238

Query: 244 LPDYIVKDN--PNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                + D+     VR +M D    S  ++   P     T  ++  R+ +  K  D
Sbjct: 239 KSCLDMADDLLTGRVRSVMPDYKPASTELWLICPSRQTVTPTVRLLRDMLREKTED 294


>gi|15597877|ref|NP_251371.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9948753|gb|AAG06069.1|AE004696_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 309

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 1/192 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +
Sbjct: 10  DEVATLLALAEHGSFAAAGRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++
Sbjct: 70  LASRFRQAVDLLDEAEHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                + +DI  +  D AIR+ + +  S L+ R+L        AAP YLK    P    +
Sbjct: 130 TDYSERFVDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLKRHGVPRIPAD 188

Query: 186 LDKHNLITFGDL 197
           L  HN + F  L
Sbjct: 189 LAAHNCLGFSGL 200


>gi|254295689|ref|ZP_04963146.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157806246|gb|EDO83416.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 322

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 19/196 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G    
Sbjct: 10  LETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGRLYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++V  +L     +L E   +P G LR+ T    G  +L      F   +P ++I+L 
Sbjct: 70  ATATDVLRRLADGARQLSERDDEPRGLLRVTTAHSFGHAILAPLCAPFAQAFPRVRIELS 129

Query: 128 LDNKDIDISMDYADCAIRLR---------KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L +  +DI  +  D A+R+          KPI S+    R L+       A+P YL    
Sbjct: 130 LSDHYVDIVGEGFDLALRMGNYDLPSQIVKPIGSN----RGLLC------ASPGYLARRG 179

Query: 179 EPLSIQELDKHNLITF 194
            P +  +L +H+ + +
Sbjct: 180 RPTAPADLARHDCVIY 195


>gi|107025767|ref|YP_623278.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693051|ref|YP_838584.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105895141|gb|ABF78305.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651051|gb|ABK11691.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 317

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 95/189 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT+ G  
Sbjct: 22  DGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLTDDGQA 81

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +LE  + +L     +  GKLR++  +  G + +   + +    YP ++I 
Sbjct: 82  YYDRCVRALAELEAAEADLDCGRHEARGKLRLSVPLAFGHHCVTPIVLDLARTYPHLRID 141

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P S+ +
Sbjct: 142 VSITDRFVDLVEEGIDLAVRIGPLADSTSLAVRRLGTQYGSLGAAPSYLARHGTPQSLDD 201

Query: 186 LDKHNLITF 194
           L  H  I +
Sbjct: 202 LKNHRTIAY 210


>gi|260768334|ref|ZP_05877268.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260616364|gb|EEX41549.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|315180044|gb|ADT86958.1| ranscriptional regulator, LysR family [Vibrio furnissii NCTC 11218]
          Length = 335

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 2/190 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F   AR GSF+ AA  L ++ ++IS  I  LE ++G  LF R  R L LT +G  
Sbjct: 27  NDLNIFVETARQGSFSQAAHSLDVTPAAISATIKRLEAQLGFALFVRSTRSLRLTHEGDI 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L + T      ++    ++ ++    SG L ++   D G+N L   L EF  LYP+I I 
Sbjct: 87  LLQKTQTALSTIQEGLDQIAQAQGDISGTLNLSAPSDFGRNQLLTWLDEFAELYPNISIN 146

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSIQ 184
           L L +   ++     D AIR   P   S+ +   + T +     A+P Y+ N        
Sbjct: 147 LDLSDGITNLYHRPIDLAIRYGTP-PDSNFVALPICTCNTRIVCASPDYVSNKPAIAKPS 205

Query: 185 ELDKHNLITF 194
           +L  H+ + F
Sbjct: 206 DLLAHHCLCF 215


>gi|218679339|ref|ZP_03527236.1| LysR family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 230

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 4/197 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD +R+F  +  SGS + AA +L +SQ ++SR+I+ LE E+G  LF R  +G++LT
Sbjct: 1   MELQWDDVRIFLAICDSGSMSAAARRLRVSQPTLSRKIADLEYELGEALFIRGNQGISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L      +          L   S   SG + I        +LL     +    +P
Sbjct: 61  NTGRRLLPAAQGMAQWATEANRSLDTKSSPASGSVSITAAPSFAFDLLAPFADKLRKEHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I ++++   + +++S    D A+RLRK       LI    V I    YA+  Y ++  +
Sbjct: 121 EITLKVMSSMERLNLSRGEVDIALRLRKNSFDDPDLITLDEVKIPAGVYASRDYARSLPK 180

Query: 180 PLSIQELDKHNLITFGD 196
               +++   N I + D
Sbjct: 181 NYDFKDV---NWIAWAD 194


>gi|171318192|ref|ZP_02907357.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171096624|gb|EDT41515.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 317

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VAR GSF  AA +LH++  ++ +QI  LE   G+ LF R  RG+ LT++G+ 
Sbjct: 25  NALRAFDAVARHGSFAGAAAELHVTHWAVGKQIRLLEDWFGLPLFDRRPRGVVLTDEGAV 84

Query: 66  LHRVTSEVYHKLETTQIELQESSV--KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L    S  + +L T  + L+ ++   + SG +R+   +      L   L +F   YPDI 
Sbjct: 85  LLNDVSHAFERLGTAVVRLRHNTFTHRISGVVRVNVPMSFAFCWLLPRLADFHSRYPDID 144

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV 161
           +++   ++ +    D  D  +R   P Q + ++ R L+
Sbjct: 145 VRVSTTSRKLRYVADAFDIGVR-SGPEQGAGVVSRPLM 181


>gi|163743310|ref|ZP_02150691.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161383498|gb|EDQ07886.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 318

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 133/296 (44%), Gaps = 21/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    + R GS + AA++L L+Q ++SRQ+  LE ++G+ L  R  + LTL+ +     
Sbjct: 29  LRALEALDRLGSASAAADELALTQGAVSRQLQALERQLGVDLVRRDQKRLTLSPEAQTYA 88

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +  +++  + + +Q + +  +G L +A     G   L   L EF  L+PD+ I + 
Sbjct: 89  ADIRQALNQIAQSTLRVQAAPL--AGSLNLAILPAFGMRWLMPRLPEFARLHPDVTINMS 146

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYL--KNCREPLS 182
              +  +   +  D AI       P   + L++ +     M    AP  L  +    P+ 
Sbjct: 147 TRLEPFNFVSEGFDAAIHFGTADWPGTQALLLKHE----QMLPVCAPDLLEGRQISTPVD 202

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I  L   ++ T         E  +++A  D       +S    + + +I Q  + G G+A
Sbjct: 203 IAALPLLHIQTRPQAWQHWFES-HYIALQD------GLSGTMYDQFATITQAALHGLGVA 255

Query: 243 LLPDYIVKDNPNLVRI--MEDVITPSFTVYF-CYPEALKNTGKLKAFRNFIFLKAR 295
           L+PDY+V+ +    R+  +    T S   YF  +PEA      L  FRN++  +A+
Sbjct: 256 LMPDYLVEQDLATGRLIALHPTATESPGAYFLVWPEARAKDPALIKFRNWLAGQAQ 311


>gi|89053808|ref|YP_509259.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88863357|gb|ABD54234.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 308

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 18/247 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR FY+VA +G  + AA +  +S++++SR ++ LE +    LF R + GL LT+ G  
Sbjct: 8   DDLRYFYLVAEAGGVSAAARRFDISKATLSRAVARLEDQAKGPLFDRLSTGLQLTQAGEA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +      T +  L+  + +P G LRIA +   GQ L+   L      YP +   
Sbjct: 68  LIEAARQATDAGSTAEELLRTVTEEPQGMLRIAASALSGQYLVGPVLARLTEDYPKVTAH 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN--CREPLSI 183
           + +     D   +  D  +RL +P +   LI R+++   M  Y    + K+    +P ++
Sbjct: 128 VSVTASGPDPLAEELDLVLRLGRP-EEPYLIARRIIGTPMKLYCGTDFAKSNPVTDPEAV 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIG---EPRISCLQVNSYLSIMQYCVLG 238
               + ++   G          NWL     DR +    EPRI        + ++     G
Sbjct: 187 SRFARVSINVPG-------APANWLLHDDADRTLTFDIEPRIYAGDPTVAIGLVH---AG 236

Query: 239 SGIALLP 245
           +GI LLP
Sbjct: 237 AGITLLP 243


>gi|332528776|ref|ZP_08404753.1| transcriptional regulator lysr family protein [Hylemonella gracilis
           ATCC 19624]
 gi|332041842|gb|EGI78191.1| transcriptional regulator lysr family protein [Hylemonella gracilis
           ATCC 19624]
          Length = 310

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 17/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +  +GS + AA +L ++  ++S+ ++ +E  +G+ L  R  R ++LT +G    
Sbjct: 10  LSFFSTLVLAGSLSGAARELGVTTPAVSKHLAQMEARLGLTLINRTTRRMSLTPEGEVYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  + +L+ +  +P G LR+  T+  G+  +   +  F+   P + IQL 
Sbjct: 70  EHARRILGDIDDLEHQLRGAKSEPQGLLRVNATLGFGRIRIAPLISAFVERNPKVDIQLQ 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L      I+ D  D   R   P   S +I R +        A+P YL+   EP + ++L 
Sbjct: 130 LSVNPPPITDDACDVCFRFGHP-PDSRVIARLIAPNRRIVVASPAYLRKHGEPRAPEDLV 188

Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQV--------NSYLSIMQYCVLG 238
           +HN I     I +  E +  W  +  +    P     QV        N     + + + G
Sbjct: 189 RHNCIG----IRQGDEAYGVWRFSSPKASKTPSGGGKQVKIRGNLTTNDGEIAVNWALDG 244

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI L  ++ V     +  LV+++    TP   +Y  Y +  K++ +++A  +F+
Sbjct: 245 RGILLRAEWDVARYLRSGRLVQLLRPWTTPDADIYAVYAQRHKSSVRIQALIDFV 299


>gi|329119178|ref|ZP_08247867.1| LysR family transcriptional regulator [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464691|gb|EGF10987.1| LysR family transcriptional regulator [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 299

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 137/308 (44%), Gaps = 34/308 (11%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  V + G+F+ AA+ L +  S++S +++ LE  +  KL  R  R ++ TE G
Sbjct: 6   NFNDLYAFTQVVKLGNFSRAAQSLGVQPSALSHRMNDLENRLNTKLLNRTTRSMSPTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+   + ++  ++     L +   K SG+LRI    +    L+   ++ FL  +P++ 
Sbjct: 66  QRLYERIAPMFGGIQEELAALGDLRGKVSGRLRINAAENPAYCLIYPKVRSFLAQFPEVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI------HMHAYAAPHYLKNC 177
           +++++ N   DI     D  +R      S   + + +V +       M   AAP YL   
Sbjct: 126 VEILISNSWSDIVAQGFDFGVR------SLGDVAQDMVAVPISGERAMCVVAAPDYLTRH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFN----WLATVDRPIGEPRI-SCLQVNSYLSIM 232
            +P +  EL +H  I     +P     FN    W    +  I   R+ + L  NS   I 
Sbjct: 180 GQPETPSELVQHRCI-----VP-AFNAFNRLDDWEFFQNGQIHRVRVPASLTFNSTALIK 233

Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFR 287
              + G G+  LP Y V D   +  LV I  +   + P   +Y+     L N  K +A  
Sbjct: 234 TAALDGLGLTWLPHYAVADELASGALVEIFSNARAVYPPMALYY-----LPNRHKTQAAE 288

Query: 288 NFI-FLKA 294
             I +LKA
Sbjct: 289 ALIEWLKA 296


>gi|83718869|ref|YP_440811.1| DNA-binding transcriptional activator GcvA [Burkholderia
           thailandensis E264]
 gi|167617596|ref|ZP_02386227.1| LysR family regulatory protein [Burkholderia thailandensis Bt4]
 gi|257140538|ref|ZP_05588800.1| DNA-binding transcriptional activator GcvA [Burkholderia
           thailandensis E264]
 gi|83652694|gb|ABC36757.1| LysR family regulatory protein [Burkholderia thailandensis E264]
          Length = 293

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 116/260 (44%), Gaps = 14/260 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF+ A E+LH++  +ISRQI+  E  +G  +F+RH + + LTE+G +  
Sbjct: 11  LRAFEAAARHESFSAAGEELHVTHGAISRQIAAFEAWLGKPVFHRHGKRVRLTEEGRRYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  +     +L+E+    +  LRI          L   L  F    P+++++L 
Sbjct: 71  ATVEAAFDSIARATGQLRETGA--ARVLRINALPTFAMKWLLPRLSRFQREVPNVELKLS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186
             N  +  S+D  D AIR R P +       + +   +    +P  LK  R P+ S  +L
Sbjct: 129 TSNAPLG-SLDGFDVAIR-RGPGRWPGCTSGRFLDESVIPVCSPALLK--RTPIASADDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H L+   D  P    +  W A    P  G  + S    + +   +Q  V G G+AL P
Sbjct: 185 ARHVLL-HSDTRPDAWRE--WFAAACAPRKGRKKQS---FDHFYLALQAAVDGLGVALGP 238

Query: 246 DYIVKDNPNLVRIMEDVITP 265
             ++ D     R++  +  P
Sbjct: 239 LPLIADELASGRLVTPLPGP 258


>gi|107102204|ref|ZP_01366122.1| hypothetical protein PaerPA_01003255 [Pseudomonas aeruginosa PACS2]
 gi|254235663|ref|ZP_04928986.1| hypothetical protein PACG_01597 [Pseudomonas aeruginosa C3719]
 gi|126167594|gb|EAZ53105.1| hypothetical protein PACG_01597 [Pseudomonas aeruginosa C3719]
          Length = 309

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 1/192 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +
Sbjct: 10  DEVATLLALAEHGSFAAAGRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++
Sbjct: 70  LASRFRQAVDLLDEAEHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                + +DI  +  D AIR+ + +  S L+ R+L        AAP YLK    P    +
Sbjct: 130 TDYSERFVDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLKRHGVPRIPAD 188

Query: 186 LDKHNLITFGDL 197
           L  HN + F  L
Sbjct: 189 LAAHNCLGFSGL 200


>gi|107027036|ref|YP_624547.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691767|ref|YP_837300.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896410|gb|ABF79574.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649767|gb|ABK10407.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 313

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 126/290 (43%), Gaps = 14/290 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+ G
Sbjct: 8   NLNRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    E     +   +    G LR++  ID G  ++   +      +P + 
Sbjct: 68  RVFYDACRDIVRATEAALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAVVALRDRHPALA 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ +++ +D+  D  D AIR+ + +  S+    +L T      A+P ++     P   
Sbjct: 128 VELVANDRVVDLVADNLDVAIRIGR-LADSNYRAVQLGTYEKWLVASPAFVARHGLPRDP 186

Query: 184 QELDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
             L     +    L  P  +E        D   G   + C+     N+  +     + G 
Sbjct: 187 DALAALPFVMLSSLPRPHTLE------LDDARGGRASVRCVAPVVSNTATACRAIVLAGG 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G  LL D+   D+     LVR++    T    ++  YP     + K++AF
Sbjct: 241 GFGLLTDFSTADDVAAGRLVRLLPGWRTAPAGIHAVYPSTRLPSPKVRAF 290


>gi|332184401|gb|AEE26655.1| Transcriptional regulator [Francisella cf. novicida 3523]
          Length = 298

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 141/295 (47%), Gaps = 27/295 (9%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LE +    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKVIGISAPVVSKQIQILEAKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 64  LLYEKVSLILNELEATEEKIFAEDILIDSELKISAPNSFGTKYLCPIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  ++I  +  D  IR+   + +S+LI +KL+ +     A+  Y+KN   P +I+
Sbjct: 124 NINLSDSYVNIIDEDFDLVIRI-GALDNSNLIIKKLMPMPSLLCASEQYIKNYGMPKTIK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQV------NSYLSIMQYCV 236
           +L+ H  I            +N  ++ +R I E   +   + V      NS   ++Q C+
Sbjct: 183 DLENHLFI-----------QYNNHSSSNRIILESASKTEIINVRQRIVTNSAEMMLQSCL 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFR 287
            G GIA LP + V D   N  L+ ++ +   P    +Y   P   K+  +LK  R
Sbjct: 232 DGLGIAKLPLFEVIDKIRNKKLIHLLPNSKNPLEKNLYIISP---KDKYRLKKVR 283


>gi|319795263|ref|YP_004156903.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597726|gb|ADU38792.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 300

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 126/277 (45%), Gaps = 21/277 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V   GSF    + + L++S+  + +  LE  +G++L  R  R L+LT++G   +  
Sbjct: 11  VFMAVVDEGSFIAGGQAMGLTRSAAGKAVGRLEDRLGVRLLNRTTRTLSLTDEGRVFYER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   ++  +  +      P G LR+      G+ ++   L+++L  +P++Q ++   
Sbjct: 71  GLLILSAVDEAEASVAGPGGAPRGVLRLTVPDAFGRLVVLPLLQKYLAAWPELQAEVSFS 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSS--SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++  D+  D  D A+R+    +S+   L+ R +        A+P YL    EP+ I  L 
Sbjct: 131 DRLADVVEDGFDLAVRIGASGESADTGLVSRVVARYKALLCASPAYLAERGEPMDIDALA 190

Query: 188 KHNLITFGDLIPKCM-----EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H+ + F     +       E  +W+    R       S L+++S  ++      G GIA
Sbjct: 191 GHDCLFFSSRNQRQSWRLRGEGGDWIKAQGR-------SRLRLDSGEALRDAAAAGLGIA 243

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSF-----TVYFCYP 274
           LLPD++V D+    R+ +  + P F      ++  YP
Sbjct: 244 LLPDFLVADDLAAGRLRQ--VLPGFDAGDVKIFALYP 278


>gi|206579151|ref|YP_002239793.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206568209|gb|ACI09985.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 297

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 122/243 (50%), Gaps = 23/243 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VAR GS T AA +L ++ S++S+ I  LE  VG+ LF RH RG+ +TE+G +L
Sbjct: 9   SLRSFEAVARLGSVTQAAHELSVTHSAVSQHIKQLEALVGVTLFIRHGRGVRITEEG-RL 67

Query: 67  H--RVTSEVYHKLETTQIELQESSVKPSG-KLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++   + H  + T++      +KP   ++ +AT    G + L   L  F   +P I 
Sbjct: 68  YALQIREALQHIADATRM----VQIKPRTLEVTLATLPSFGCHWLLPRLARFQARHPQIA 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+     +++  +  D AIR+ +      +  R L        AAPHY ++   P + 
Sbjct: 124 VRLLTSLAVVNLQQEGIDLAIRMGQG-DWEGMESRHLFADEQLVVAAPHY-RSGDLPTTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFN-WL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           Q +   ++I         ME ++ W   A +++PI     S L++N    +++   LG+G
Sbjct: 182 QAIAASDIIF-------SMESWHAWCSQAGLEKPIVP---SGLRLNDSNLVLEAVRLGAG 231

Query: 241 IAL 243
           +AL
Sbjct: 232 VAL 234


>gi|171914149|ref|ZP_02929619.1| transcriptional regulatory protein, LysR family [Verrucomicrobium
           spinosum DSM 4136]
          Length = 302

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 67/125 (53%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +LR F V+AR GSFT A   LHL+QS+IS  I  LE ++G  LF+R  + + LT  
Sbjct: 6   LDSRQLRAFTVLAREGSFTQAGRALHLTQSAISHAIRALEEDLGCMLFHRQGKRVLLTHH 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L R   E+  ++   +  L      P G++RI +T    Q +L   L+EF   +P  
Sbjct: 66  GRELLRHAEEIQRQMALARASLGALDQNPRGQIRIGSTPAASQFILPTVLREFKDSFPLY 125

Query: 123 QIQLI 127
            I ++
Sbjct: 126 SISIV 130


>gi|150377654|ref|YP_001314249.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032201|gb|ABR64316.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 305

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 134/296 (45%), Gaps = 14/296 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL-TLTEQGS 64
           D +RV   V  +GS +  + +L+    S+SR+++ LE  +G  L  R +R L  LT+ G 
Sbjct: 5   DAMRVLLAVVDAGSLSAGSRKLNAPLPSVSRKVADLERYLGANLIIRTSRNLQQLTDAGR 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++   L+  +        +P G L I   I+ G   +     +F+  +P++ +
Sbjct: 65  DYVDAARKIIADLDEVERRASGEYQRPRGLLTITMPIEFGHRYVLPIALDFMNEHPEVTL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+  ++ + ++ +  D AIRL + +  S+L   K     +   A+P YL+    P    
Sbjct: 125 NLLSLDRSVHLANEQVDVAIRLGE-LADSTLYAVKAGEFRLLTCASPAYLERHGVPHHPT 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIA 242
           EL KH+ I F +        F W   VD    E  PR S ++VN+  S +     G+GIA
Sbjct: 184 ELTKHDGIMFHN------RSFFWSFEVDGKSVEAMPR-SRIEVNTAASCVTAARNGAGIA 236

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L DY V +  +   LV+I+ +       ++  Y        K++AF ++   + R
Sbjct: 237 RLFDYQVPEEVSSGALVQILREYGGRPKPIHIVYSRQGLLALKVRAFIDWTLPRLR 292


>gi|71909689|ref|YP_287276.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB]
 gi|71849310|gb|AAZ48806.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 327

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 69/126 (54%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D   LR+   +A SGS T AAEQ+HL+ SS S +++ LE  +GI LF RHARGLT T
Sbjct: 28  MRYDLPDLRLVAAIADSGSLTRAAEQVHLAPSSASHRLTQLEAALGIPLFARHARGLTPT 87

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L R   +V+ +LE    +L   +     ++ +    +     L  +L +FL  +P
Sbjct: 88  PAGESLLRHARQVFAQLEQMHADLAPYASGLHSQVTVFANTNAINCFLPEDLGDFLREHP 147

Query: 121 DIQIQL 126
            I++ L
Sbjct: 148 HIRVSL 153


>gi|28897651|ref|NP_797256.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364580|ref|ZP_05777189.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260876453|ref|ZP_05888808.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260895875|ref|ZP_05904371.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260902775|ref|ZP_05911170.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28805864|dbj|BAC59140.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308086755|gb|EFO36450.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092807|gb|EFO42502.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308108656|gb|EFO46196.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308115388|gb|EFO52928.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 314

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  +FT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVIFSALIKHKNFTVAAKSLGVSVSHVSKQLSQLEESLGIKLVQRTTRSFTPTEAGKTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +V   + +  +E++    + +G +R+  +   G   +   ++E   LYP +Q+++
Sbjct: 68  YHHCEQVVQAVSSATLEMESQRDEVAGLVRLGLSQSFGTLHIIPAIQELRELYPQLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  +   + +    + QR L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMLAEGLDLWVTNNEHLPEGYIAQR-LTDCQFVVAASPDYLLKYDTPTEPNDL 186

Query: 187 DKHNLITFGDLIPKCME-DF-NWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
             HN      LI +  E D+  W  T  +     ++S    V+   ++    + G GIA 
Sbjct: 187 SLHNC-----LIYRSWERDYTGWAFTKGQQELNVKVSGNYSVDLAEAVRDAAIAGWGIAY 241

Query: 244 LPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y++ D      L++++ D   + S   Y  YP       K+ A  NFI
Sbjct: 242 LATYLLGDEFRTGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVINFI 292


>gi|288934387|ref|YP_003438446.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889116|gb|ADC57434.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 299

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 6/242 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + L +F   A  GSF+ AA +     + +S  I  LET + I+LF R  R L LT +
Sbjct: 2   FRLEDLTLFVRAAALGSFSDAARETGQQPAQVSAAIKRLETILNIRLFARSTRSLRLTPE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       +++   LE    ++Q    +  G L+IA   DLG+NLL    ++F   +P +
Sbjct: 62  GETWLPYATQMLDTLEAGLQKIQTPDDEVRGMLQIAVPSDLGRNLLLTLFRDFRQRHPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPL 181
           +++L+  ++  D+  D  D A R       +S I   +   +     A+P ++    EP 
Sbjct: 122 RLRLLFSDQLTDVFKDPVDVAFRYGNN-DDASFISLPVAPENRRVLVASPEWIARHGEPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           +++EL +HN + +   I +      W  ++D  + + ++S  +  +    I +  V G G
Sbjct: 181 TLEELSQHNALIY---ILRGRPFDRWSLSLDGVVQQQKVSGTVMSDDAEVIRRLAVAGEG 237

Query: 241 IA 242
           IA
Sbjct: 238 IA 239


>gi|161521509|ref|YP_001584936.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352322|ref|YP_001947949.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345559|gb|ABX18644.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336344|dbj|BAG45413.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 306

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 87/187 (46%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR I+ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVELRSFTRAADMHGLARPVVSRAIAELEARFGGRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + V  +L+  + E Q  + +P G LR+        N     +  F   +P ++I 
Sbjct: 65  IYERCAAVLDELDALEAEAQTQTREPDGLLRLVAHTTAALNQFVPLIAGFKAAHPKVRID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  I     + S + I R +  I     A P YL+    P +  +
Sbjct: 125 VTLTERPVDLVGEGYDIGIVAPYMLSSDTTIVRLIARIPFVIVATPAYLRAHGRPATPAD 184

Query: 186 LDKHNLI 192
           L  H  +
Sbjct: 185 LVDHPFV 191


>gi|293394565|ref|ZP_06638860.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422925|gb|EFE96159.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 320

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF +VAR   F  AAE++ +S + IS++I+ LE  + + L +R  R + +TE G +++
Sbjct: 18  LRVFVLVARRAGFAAAAEEMGVSPAFISKRIALLEKALSVSLLHRTTRRVAITEDGERIY 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + + ++    E+     +P G LRI ++    +  +   L      YP ++++L 
Sbjct: 78  EWAQRILNDVDHMMDEVSTIRQEPQGTLRIVSSHGFSRRFIAPALSVLATQYPRLELRLD 137

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D  IR+   I + +LI RKL        A+P YL     P ++ EL 
Sbjct: 138 VSDRLVDLVSEGFDLDIRVGDDI-APNLIARKLADNRRILCASPAYLARHGMPKTLNELS 196

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALL 244
               +   +   + M    W   +  P GE  I     L  N    + Q+C+ G G+AL 
Sbjct: 197 GRACLVIKE---RDMPFGIW--RLQGPGGEETIKVTGALASNHGEIVHQWCLDGQGVALR 251

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V++N     LV I+ D    S  ++  Y   L  + K++    F+
Sbjct: 252 SYWDVQENIASGKLVHILSDYYQ-SANIWAVYVSRLATSAKVRVTVEFL 299


>gi|222082214|ref|YP_002541579.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726893|gb|ACM29982.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 308

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 143/299 (47%), Gaps = 20/299 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR G+FT AAE+L+L+QS++SRQI  LE + G+ LF R  R + L+E G
Sbjct: 10  DIANLQAFECAARHGNFTRAAEELNLTQSAVSRQIHALEEQTGLLLFERVRRRVILSEPG 69

Query: 64  SKLHRVTSEVYHKL-ETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            +L    SEV   L ++ Q+ ++  +S      L IAT    G   L   L +FL  +P 
Sbjct: 70  KRL---LSEVQRLLAQSEQLMMRAVASADKDESLNIATLPTFGARWLMPRLPDFLANHPS 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPI---QSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           + + +   ++  D   +  D AI   +P     +S+ +  +LV + + +      L+  R
Sbjct: 127 LALTVGSRSEPFDFDQEDFDLAIHYGQPSWAKATSTFLYSELV-LPVASRKVVERLR-AR 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +P  + +    +L T   L  + +E  N + T +   G       + + +  I+   +  
Sbjct: 185 DPAGLADAPLLHLTTRPRLWSQWLEA-NGVTTDNGFRGN------RFDQFSMIIGAALAD 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+ALLP +++++      LV + +  +   F+ +   PE  ++     AF+ ++  +A
Sbjct: 238 MGVALLPSHLIEEEIRADALVPVFDLPMATEFSYHVVLPEGRQSNEVANAFKAWLISQA 296


>gi|209517927|ref|ZP_03266760.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501643|gb|EEA01666.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 307

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 120/278 (43%), Gaps = 43/278 (15%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   +R F  VA++GSFT AA +LHLSQ +++ QI  LE  VG++LF R++R + LT
Sbjct: 1   MDLNLRDIRAFIAVAQTGSFTRAAARLHLSQPALTVQIRRLEETVGLRLFDRNSRNVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L  V  +  H +ET  ++ +      SG + IA       ++L   ++      P
Sbjct: 61  PTGRELLPVLQKSLHDMETVLLDARALGEGASGTVCIACLPTFAASMLPELVQALRKAVP 120

Query: 121 DI----------QIQLILDNKDIDISMDYADCAIRLRKPIQSSSL------IQRKLVTIH 164
            +           +  ++ N++ DI +   +        +  S L      I R +  + 
Sbjct: 121 RVGFEVRDVVASMVNTLVRNEEADIGLTGGE--------LNDSGLEVLHAGIDRLVAVLP 172

Query: 165 MHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRI 220
                  H L   R P+++ +L    L+          +  +  A VDR   +    PRI
Sbjct: 173 RQ-----HALARRRRPVTLADLANEPLVLTA-------QGTSVRAVVDRAFADAQCVPRI 220

Query: 221 SCLQVNSYLSIMQYCVLGSGIALLPDYI--VKDNPNLV 256
           +C +    +S +     G GI +LP     V+  P LV
Sbjct: 221 AC-EPTYMMSAVAMARAGLGITILPASAREVRAEPELV 257


>gi|330831037|ref|YP_004393989.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328806173|gb|AEB51372.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 300

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 132/294 (44%), Gaps = 13/294 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  FY V   GSF+ AA+ L +S+  +SR +S LE+ +  +L  R  R L+LTE 
Sbjct: 2   MDIAHLASFYEVVLRGSFSTAADTLGVSKGMLSRHVSALESSLNAQLLQRSTRRLSLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   E++      + ++Q  + +  G+LR    +  G  ++   L  F  L P +
Sbjct: 62  GKTLYQQAGEIFALARQAEQDIQALTEEDGGRLRFTCPVSTGDRMVSELLASFAALCPGV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L   N+ +D+S    D A+R    +   +L+   L  +     A+P  +     P +
Sbjct: 122 EVELNFTNQMVDMSQGENDIALRAMNEV-PDNLVALPLGRLKDVVVASPALVAREGRPAT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGS 239
             EL   + +  G       E ++++    R   E  I     ++ N Y +++Q    G 
Sbjct: 181 PYELSGRSCLLQGH--NPAWEQWHFI----RGGEEAHILVQGKVRANHYSTVLQLVRAGM 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G A  P  +V+       LV ++++  +    ++  + +  +   K++ F+  +
Sbjct: 235 GYAKCPLMLVESQLTAGELVTVLDEWQSGLHQLHVLHAQQRRVPRKIRLFKQVL 288


>gi|53721971|ref|YP_110956.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|126444016|ref|YP_001062381.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|167742295|ref|ZP_02415069.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167819470|ref|ZP_02451150.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167906256|ref|ZP_02493461.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167914580|ref|ZP_02501671.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167922475|ref|ZP_02509566.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217418983|ref|ZP_03450490.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|52212385|emb|CAH38410.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|126223507|gb|ABN87012.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|217398287|gb|EEC38302.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 290

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 25/294 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 8   NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFALFMRHARGLTLTVEGEQ 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +      +   +  F   +PD+ +Q
Sbjct: 68  LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MRWVLPRIMRFQREHPDLHVQ 122

Query: 126 LILDNK-DIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    + D+D   +  D AI         + +  L   +L  +      AP  L+    P
Sbjct: 123 MTTTWRHDVDFQSEPFDAAIVYGMSPGPDVAAVPLFDERLTPV-----CAPDLLEG--RP 175

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
           L+ +++L  H L+  T      +   D+   A VD P   P    L + +  +   + V 
Sbjct: 176 LARVEDLACHTLLHPTRDHRDWRRWLDYAGAAGVD-PDRGPSFDSLDLATSAATQGFGVA 234

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LG       D+  +    L   ++ V       YF YPE++    K++ F  ++
Sbjct: 235 LGDLTLSEEDFAAR---RLAMPLDIVQRTGARYYFVYPESVAQQQKIQRFSAWL 285


>gi|325272230|ref|ZP_08138650.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324102636|gb|EGC00063.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 301

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 12/246 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  VA   SF  AA  L  S S+++R +  LE   G KL  R+A  +TLT  G +L
Sbjct: 8   EIQAFVSVAHKRSFVAAARALGRSPSAVTRAVQTLEDNAGSKLLNRNANAVTLTAAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +         EL   S    G +R A    L ++LL   L +F   +P + + +
Sbjct: 68  LPHAERLLDVQRDAADELAALSGNAQGWIRFAVPQLLAEHLLPQVLADFSRRHPQVTLDV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D  +   D A+R   P QSS LI   L     H YA+P YL     P   ++L
Sbjct: 128 QYSDEALDPLLGKLDFAVRGAFP-QSSELIGYPLWPYQRHLYASPAYLALAGTPAHPEQL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLA----TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + H+LI      P+ ++ +++      T  RP   PR   L++ S  ++    + G+GIA
Sbjct: 187 EGHSLILH--TAPRILKAWHFCRDGQITSVRP--RPR---LRLASGTAVYHGALAGAGIA 239

Query: 243 LLPDYI 248
            L  ++
Sbjct: 240 RLAAWV 245


>gi|302547153|ref|ZP_07299495.1| LysR family transcriptional regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302464771|gb|EFL27864.1| LysR family transcriptional regulator [Streptomyces himastatinicus
           ATCC 53653]
          Length = 300

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 12/149 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  ++ +F  VAR GS T  A  L+ + S++S+Q+S LETE G  L  RHARG+TLT+ 
Sbjct: 2   LDVRRILLFTEVARRGSVTATARALNYTPSAVSQQVSRLETEAGQPLLERHARGVTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  +L   + EL + +   +G LRI T   +G +LL   +  F   +PD+
Sbjct: 62  GRALALRGERIERELTAAENELADFAGLRAGTLRIGTFPTVGASLLPRAVIAFREAHPDV 121

Query: 123 QIQL----------ILDNKDIDISM--DY 139
           ++ +          +L+N+++++S+  DY
Sbjct: 122 RLTVRSARIAGLWAMLENREVEMSLMWDY 150


>gi|282599652|ref|ZP_06257329.1| contact-regulated protein A [Providencia rustigianii DSM 4541]
 gi|282568102|gb|EFB73637.1| contact-regulated protein A [Providencia rustigianii DSM 4541]
          Length = 326

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 125/269 (46%), Gaps = 20/269 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AAEQ  ++ S++SR +  LE +V   L YR  R + L+
Sbjct: 28  MKITLDELQTFISVVDSGSITRAAEQQCMTVSTVSRALLRLEEKVKTTLLYRTTRSIKLS 87

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   E+ +  +  +  L      PSGKLRI  +     +++   +  F   YP
Sbjct: 88  EEGIAFLQKAREIVNLAQEAEDLLSARQSIPSGKLRIDASTPFLTHVIAPLIPLFYERYP 147

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++  +    ++     D A R+   ++ SSL    L        A+P YL+    P
Sbjct: 148 QVELEINNNEGITNLLEKKTDVAFRI-GTLKDSSLSATLLGYSQKRLVASPTYLEKYGTP 206

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL--- 237
            +I++L+KH L+ F        E  N+      PI +   + L+++  ++     VL   
Sbjct: 207 QNIEDLNKHCLLGF-----TTPESLNYW-----PIEDSSGNLLKIHPNIAGASGEVLYHL 256

Query: 238 ---GSGIALLPDYIVKD---NPNLVRIME 260
              G+GI    D++  D   +  LV+++E
Sbjct: 257 ALQGTGILCSADFVTLDAFASGRLVQVLE 285


>gi|163857676|ref|YP_001631974.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261404|emb|CAP43706.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 321

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 122/293 (41%), Gaps = 20/293 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSFT AA  L +S S++S+ + GLE  +G++L  R  R + LTE+G +  + 
Sbjct: 22  AFTRVAHHGSFTRAAADLGVSASALSQTVRGLEARLGVRLLNRTTRRVALTEEGQRFLQR 81

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  +     ++ ++  +P+G LRI T+      L+  +L EF   YP I ++L LD
Sbjct: 82  VQPALGAIGDALEDMDDTRGRPAGTLRINTSRVACAMLVTPHLAEFTGRYPGIVLELFLD 141

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN-CREPLSIQELDK 188
           +   D+     D  IRL + +    +  R      M    +P Y +     P    +L  
Sbjct: 142 DGLSDLVAGGFDAGIRLGENLARDMVAVRISRNQRMVTAGSPAYFRQYGNPPRQPADLAA 201

Query: 189 HNLITFGDLIPKCMEDFNW--------LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           H  I  G         + W        L  VD P        +  N +  ++Q  + G G
Sbjct: 202 HACI--GTRFETRGTLYRWEYRQPDGQLLEVDVP------HRIVTNDFALMVQAALDGLG 253

Query: 241 -IALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            I +L D I     +  L  ++E         Y  YP   +   KL+ F +F+
Sbjct: 254 LIHVLEDPIAAHLASGALQPVLESWAADFPGFYLYYPHRTQMAPKLRVFVDFL 306


>gi|326796080|ref|YP_004313900.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326546844|gb|ADZ92064.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 303

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 14/168 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F   AR GSF  AA +L+++ S+IS QI GLE+ +GI+LF R  R + LTE G +
Sbjct: 5   NSLKCFESAARHGSFNRAANELNVTPSAISHQIKGLESFLGIELFRRTKRKVILTEAGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  ++ +LE+   +L+  S +  G L +A         L   ++ F   YPDI+++
Sbjct: 65  YIGPIKSIFEQLESATADLK--SAQKGGYLSLAVAPAFLTRWLMPRMESFQAQYPDIELE 122

Query: 126 LI-------LDNKDIDISM-----DYADCAIRLRKPIQSSSLIQRKLV 161
           +        L N DID+++     ++ D  +   +PI  + +   KL+
Sbjct: 123 ITSSMGAVGLSNSDIDMAIYFGNGEWDDLEVHYLRPISLAPVCSPKLI 170


>gi|330819977|ref|YP_004348839.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327371972|gb|AEA63327.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 321

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 16/297 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE  +G  LF R  RG+TLTE G++L 
Sbjct: 13  LSAFESAARLASFTAAARELGSTQPAVSQRVVQLEEALGAPLFERGHRGVTLTEDGARLF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++E   +  G L + T +      L   L +     PD+ ++++
Sbjct: 73  EAVRQSLDTLRCATADIRERRAR--GALTLVTDVGFATYWLMPRLAQLKAEMPDVDVRVV 130

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SI 183
              +  D+  D+AD AI       P  +S+ +  + VT       +P +L   R  L   
Sbjct: 131 T-AQHADLQRDHADVAILFGDGDWPACTSTRLFEEAVT----PVCSPDFLAAHRRKLKGP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L    L+      P+   D++      +    P    L  NSY  ++   ++  G+AL
Sbjct: 186 ADLLALPLLHVQPTKPERWLDWHGWFAAHQLTAPPEPHGLTFNSYALVVHAALMNQGVAL 245

Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               L D +V     LVR +E+        +   P +      +  FR ++F + R+
Sbjct: 246 GWSPLVDELVASG-QLVRCVEETAVTERGYFLVRPPSRPEAPAVGRFRRWLFDRCRE 301


>gi|309779413|ref|ZP_07674174.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
 gi|308921654|gb|EFP67290.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
          Length = 305

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 116/250 (46%), Gaps = 15/250 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LE ++G +L  R +  + +T  G 
Sbjct: 4   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAELEVQLGTRLLQRSSHRVAVTPVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   ++       +     +  +P+G LR+ T+  L + L+ G L EF   +P ++I
Sbjct: 64  AVYRHARDMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLVAGWLAEFAHAHPKLRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L L N  +D+     D AIR    P+ S  ++ R LV       A+P  +    EP + 
Sbjct: 124 ELDLSNTYVDLIEQRIDVAIRAATGPLPSRDVVARHLVVSPRVLVASPALIARVGEPDTP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR------PIGEPRISCLQVNSYLSIMQYCVL 237
             L+    +  G L        +W+    R      PI  PR +    ++ +++ +  + 
Sbjct: 184 AALEDFPCLGQGSL----TRSRDWVLHDARGHRLSLPI-RPRFAS---DNIIALREAAIA 235

Query: 238 GSGIALLPDY 247
           G G+ +LP +
Sbjct: 236 GLGLTILPQH 245


>gi|266635499|gb|ACY78301.1| AmpR transcriptional regulator [Erwinia pyrifoliae]
          Length = 298

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 29/293 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT A+ +L+++ ++IS+Q+  LE  +  +LF R +RGL LT +G  
Sbjct: 8   NSLRAFEAAARLLSFTKASRELNVTHAAISQQVKALEQHLKCQLFIRISRGLMLTAEGES 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  + +E + ++ +T     +  ++   K+ +  T  +G   L   L +F  L+P I + 
Sbjct: 68  LLPILNESFDRIASTLDRFSDGQMREKMKIGVVGTFAVG--WLLARLADFRRLHPHIDLL 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS--- 182
           L   N  +D   +  D AIR        +               A H+L  C  PLS   
Sbjct: 126 LSTHNNHVDSLAEGLDYAIRYGNGAWQGT---------------ASHFL--CDAPLSPLC 168

Query: 183 -----IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                 Q     +L +F  L     ++++ W +     I  P    +  +S L++++   
Sbjct: 169 CPALGAQLRAPGDLHSFTLLRSYRRDEWSTWFSAAGERIPSPSQHIMMFDSSLTMLEAAQ 228

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G+GIAL P  +     N  RI++   + S ++   +   L++  +  A R+F
Sbjct: 229 AGAGIALAPPTMFSHLLNSGRIVQP-FSQSVSLGGYWLTRLQSRTETAAMRDF 280


>gi|163740924|ref|ZP_02148317.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161385915|gb|EDQ10291.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 334

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 132/297 (44%), Gaps = 15/297 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F+W  +     V  +GS + AA +L ++ S++ R+I  +E+++G+ LF R + G  +T 
Sbjct: 45  NFEWSDIPFVLAVCETGSLSGAARRLGVNHSTVFRRIENVESKLGVTLFERQSHGYVMTA 104

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++  ++   Q EL    ++  G L + TT  L  +      + F   YPD
Sbjct: 105 AGEYFLQHGLKLRERMTLIQRELSGQDLRLEGILTVTTTDSL-LHTFSPVFRCFQQKYPD 163

Query: 122 IQIQLILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++++L+   + +D+    AD A+R  +  P      I R L+ +    YA   Y++  R+
Sbjct: 164 VELRLLSGTRPLDLMQRDADIALRPTMNPP---EHWIGRNLLPVSYAVYAHTDYVEAMRD 220

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                  ++H  +   D + +     N L    +    P       ++ + +      G 
Sbjct: 221 ----LPPEQHRWLQLDDSLRQ--SPMNRLTAAHKAEHAP---VTLTSAVMGMFDLARAGL 271

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA+LP Y+ +  P L R+       + +++      ++ + ++ AF  F   K RD
Sbjct: 272 GIAVLPCYLGQSCPELQRLHAPDPKNNTSLWMLAHPDIRRSARVHAFFEFATAKIRD 328


>gi|330815370|ref|YP_004359075.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327367763|gb|AEA59119.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 309

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 112/250 (44%), Gaps = 19/250 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V    SF+ AA +  ++ SS++R+I  LE ++G+++ +R    +  TE G  L+
Sbjct: 9   LALFVDVVELQSFSAAARRHDMAASSVARRIDQLEAQLGLRVLHRSTHAMRPTEAGQLLY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   Q EL +   +P G LRI      G+  L   L  F+  +P I ++L+
Sbjct: 69  ERARSLLAGMRGLQAELHKQRDEPGGLLRIDCPAPFGRLHLMPALAAFMRRHPAIVVELV 128

Query: 128 LDNKDIDISMDY----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L +  +D+  +      D A+R+  P+ ++  +   L        A+P Y+     P S+
Sbjct: 129 LTDSMVDLPGERLGAEVDLALRI-GPVAATRFVATVLAPQRRVLCASPAYVAARGAPRSL 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLGS 239
           +EL +H+ + +    P     F          GE    P     + N   +++   V G 
Sbjct: 188 EELARHDCLAWHGSPPPGAWRF----------GEHRHAPDAPRFRSNHSEALLAAAVEGL 237

Query: 240 GIALLPDYIV 249
           GIA LP ++ 
Sbjct: 238 GIAHLPTWLA 247


>gi|229587606|ref|YP_002869725.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229359472|emb|CAY46313.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 316

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 131/293 (44%), Gaps = 31/293 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F   AR  SFT AA +L  +Q +IS+QI  LE ++ I+LF R  RG+ LT+ G+ 
Sbjct: 11  DLLRAFEAAARHRSFTAAAMELGTTQPAISQQIKRLEEQLAIRLFDRIYRGIELTDAGAL 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           L      V   L+     L   + +   + L++AT        L   L  F    P + +
Sbjct: 71  LF---EHVQGGLQAINAGLSVITQQDQHEVLQVATDFAFAAYWLMPRLHRFHAANPQVDV 127

Query: 125 QLILDNK-------DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            L+   +       DID+++ + D   +     Q  SL    L    +    +P +LK+ 
Sbjct: 128 SLVTSERNHATLRSDIDVAVLFGDGRFK-----QGDSLW---LFNEEVFPVCSPQWLKDQ 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQY 234
             PL++Q L    L+          + F+W + V R +G    P    L+ ++Y  ++Q 
Sbjct: 180 ATPLTVQNLHDFPLLHLRQ--ENNSQWFDW-SGVFRELGIATAPTPGQLRFDNYTLLIQA 236

Query: 235 CVLGSGIAL----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            + G G+A+    L D +++ N  L R + D +   F  Y   P+  K  G+L
Sbjct: 237 AIAGQGVAIGWRHLVDNLLEQN-WLCRPLSDTVISRFGYYVVQPQR-KRRGQL 287


>gi|227533391|ref|ZP_03963440.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188957|gb|EEI69024.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 298

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 113/251 (45%), Gaps = 19/251 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++ +  ++  F  VA +G  T AA+QLH++Q  +S Q+  LE E+G++LF R +RG+ LT
Sbjct: 5   IAMNLKQITYFLAVAEAGQMTAAAKQLHMAQPPLSYQLKALEDELGVRLFERGSRGVRLT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +      ++   +   +   + S     G L +  T   G  L +  L+ F   YP
Sbjct: 65  GSGQQFMTYAQQIVETVAAAENAARRSGEGEIGTLALGLTSSAGDVLPRQKLQAFNRRYP 124

Query: 121 DIQIQLILDNK--DID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            ++ +L  DN    +D +  +  D AI +R P     L   +L   HM A AA    +  
Sbjct: 125 QVEFELYEDNTYGILDKLRRNILDLAI-VRTPFNDDGLASCRLSGDHMIAVAAAS--QPL 181

Query: 178 REPLSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
              L+I +L +  LI    F  L      ++            P I+ L  +   + + +
Sbjct: 182 PATLTIPDLKQQPLIVYRRFSSLFKTTFAEYGI---------TPTIAVL-CDDARTALHW 231

Query: 235 CVLGSGIALLP 245
             +G G+AL+P
Sbjct: 232 AQMGMGVALVP 242


>gi|254421104|ref|ZP_05034828.1| hypothetical protein BBAL3_3414 [Brevundimonas sp. BAL3]
 gi|196187281|gb|EDX82257.1| hypothetical protein BBAL3_3414 [Brevundimonas sp. BAL3]
          Length = 291

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 4/187 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-KL 66
           + VF  VA  G  + AA +L+LSQ S+SR I  LE  +G  L  R  R ++LTE GS  L
Sbjct: 1   MAVFVRVAEGGGLSRAARELNLSQPSVSRIIGALEARLGTTLLLRTTRSISLTEAGSLYL 60

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +    E  Q      S+   G LR+A  +  G   +   L  FL L+PD+++++
Sbjct: 61  ERARHLLAEMEEAEQATRGLDSLH--GVLRLAMPVLYGARAVIPALATFLPLHPDLRVEI 118

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ +   ++  +  D AIRL   P+  S+   R++  +     AAP YL +  EP S  E
Sbjct: 119 VMSDARQNLVTEGVDVAIRLGVGPLDDSTFGARRIARVERLVVAAPAYLSSRGEPASPAE 178

Query: 186 LDKHNLI 192
           L  H+ I
Sbjct: 179 LAGHDCI 185


>gi|167839556|ref|ZP_02466240.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 290

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 134/293 (45%), Gaps = 23/293 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 8   NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFPLFMRHARGLTLTAEGEQ 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +      +   +  F   +PD+ +Q
Sbjct: 68  LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MRWVLPRIMRFQREHPDLHVQ 122

Query: 126 LILDNK-DIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    + D+D   +  D AI         + +  L   +L  +      +P +LK+   P
Sbjct: 123 MTTTWRHDVDFQSEPFDAAIVYGTSPGPDVTAVPLFDERLTPV-----CSPDWLKD--RP 175

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           L+   +L +H L+  T      +   ++  +A VD P   P    L + +  +   + V 
Sbjct: 176 LAHAGDLARHTLLHPTRDHRDWRRWLEYAGVADVD-PDRGPSFDSLDLATSAATQGFGVA 234

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + L  + +      L   ++ V       YF YP+++    K++ F  ++
Sbjct: 235 LGDLTLSEEDLAAR--RLATPLDIVQKTGARYYFVYPDSVARQQKIQRFSAWL 285


>gi|329848878|ref|ZP_08263906.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
 gi|328843941|gb|EGF93510.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
          Length = 292

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 130/296 (43%), Gaps = 10/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW   + F  V  +GS + AA Q+  +Q ++ R I  LE  +G+ LF R  RGL   E  
Sbjct: 3   DWTHWQSFLAVIDTGSLSAAANQVGATQPTLGRHIKALEESLGVPLFLRTVRGLEPNE-- 60

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKP--SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           + L  V       +   ++ L+ +      +G +RI  ++ +   +L   + +     P 
Sbjct: 61  AALSLVDDARAMGVAAGRLALKAAGKTETLAGSVRITGSVVMCNLVLPAIVADLRREEPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI+++  ++  ++    AD A+R+  P Q  +L+ R+L    +  Y A  YL+    P 
Sbjct: 121 IQIEIVASDRSQNLLRRDADIALRMFDPTQ-QALVARRLGETPLGLYGAKSYLERRGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ E+  H++I F D     ++ F     V      P    L+ +  +      + G+G+
Sbjct: 180 TLGEMLGHDIIGF-DRDDAMLKGFAAQGAVVTREQFP----LRCDDQMVDWHLLLAGAGL 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            +    +     NL R+   +  P   ++    E +++  +++   +F+  +   W
Sbjct: 235 GIAQRRLGDAQTNLERLDVGLTLPVLPIWLVMHEDVRSNARIRRVADFLSQRITSW 290


>gi|239832603|ref|ZP_04680932.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239824870|gb|EEQ96438.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 381

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 118/261 (45%), Gaps = 14/261 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD L+ F  VAR+G  + AA QL  S  ++ R+I  LE  +  KLF R+ RG  LT  
Sbjct: 81  FTWDDLQYFLAVARTGQLSTAARQLRTSHVTVLRRIDRLEQALATKLFERNPRGYLLTPI 140

Query: 63  GSKLHRVTSEVYHKLETTQIELQESS--VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           G +L  VTS    + E  + + + +      SG +R++T    G   L   L      YP
Sbjct: 141 GERL--VTSAEVMEREAVKFQTEATGNLAALSGVVRLSTLEGFGNFFLADRLPVLAQSYP 198

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++++   + + +S   A+ +I L  P ++      KL    +  Y    YL      
Sbjct: 199 SLFVEVVTIQQIMSLSRREAELSITLHMP-RTGPYHSEKLTPYRLFIYGHRDYLDRHPPI 257

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLG 238
            + +++ +H  I +       ++D  +   +D  R I   +    Q +S  + +    +G
Sbjct: 258 RTREDMARHPFIGY-------IDDMVFTPGLDYMREILPGQRCTYQSSSIHAQLIATQIG 310

Query: 239 SGIALLPDYIVKDNPNLVRIM 259
            G+ +LP +I   +P LV ++
Sbjct: 311 YGLCVLPYFIASRHPELVPVL 331


>gi|163853203|ref|YP_001641246.1| carbonate dehydratase [Methylobacterium extorquens PA1]
 gi|163664808|gb|ABY32175.1| Carbonate dehydratase [Methylobacterium extorquens PA1]
          Length = 302

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 21/303 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  VA +G F   A     S S +S  +  LET +G++LF R  R +  T
Sbjct: 1   MAMDLGDLAAFVSVAEAGGFREGARASGTSASGLSEAVRRLETRLGVRLFNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    +    ++E     +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGARLLERLTPALGEVEAALDVVNGFRDRPAGTLRLNVPVSAARLVLPRIVPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHYL 174
           DI++ ++ ++  +D+     D  IR  + ++   +       Q++  T      AAP YL
Sbjct: 121 DIRLDVVAEDSFVDVLAAGCDAGIRYDERLEQDMIAVPIGPRQQRFATA-----AAPAYL 175

Query: 175 KNCREPLSIQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
                P    EL  H  I      G  I    E    +  V+ P G P I  +   + L+
Sbjct: 176 DRHGHPQHPSELLDHACIGGRFASGATIAWEFERDGEVVRVN-PSG-PLIVRVGAATDLA 233

Query: 231 IMQYCVLGSG-IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +    V G G I L  D++    D+  L  ++E    P    +  YP        L+AF 
Sbjct: 234 V-DAAVAGVGIITLFEDWLQPHLDSGALEPVLEPWWQPFSGPFLYYPGRRYLPAPLRAFI 292

Query: 288 NFI 290
           +FI
Sbjct: 293 DFI 295


>gi|170735127|ref|YP_001774241.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821165|gb|ACA95746.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 343

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 124/292 (42%), Gaps = 19/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AAE+L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 60  LLVFEAAARHESYTRAAEELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 119

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L  F   +  + + L 
Sbjct: 120 AELSGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHGFYAAHSGVTVHLH 178

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK----NCREPLSI 183
                ID   D  D AI +        L   +L    + A A P   +    + R P   
Sbjct: 179 SRIGAIDFLNDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIAPPDTGRGRKADARTPAWA 237

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
               K  L+          E F+      R +   RI    ++ S+L  +Q    G GI 
Sbjct: 238 A---KQTLLGVTSNQQAWAEWFSHYRLDHRQM---RIGPSFELTSHL--IQAVRAGMGIG 289

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L+P  +V+D      LV I  D IT   + Y  YP   +    L AFR+++ 
Sbjct: 290 LVPKVLVEDELSRGELVSI-GDAITSQRSYYLVYPPGNETLPSLVAFRDWLL 340


>gi|116252106|ref|YP_767944.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256754|emb|CAK07844.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 297

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 126/276 (45%), Gaps = 15/276 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF VVAR  SFT AA +  +SQS++S  +  LE  +G++L  R  R ++ TE G +
Sbjct: 7   NDLMVFLVVARERSFTKAAAKFGVSQSALSHTLRQLEQRLGVRLLTRTTRSVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + +    ++ ++ +    L     +P+G +R+       Q  +   L+ FL  YPDI+++
Sbjct: 67  MLQSIGPLFDEIGSALDGLNILRDQPAGTVRLTAGDYQIQCYIWPKLRTFLQQYPDIRLE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L ++    DI  +  D  +R  + I    +  R    +     AA  Y  +   P   ++
Sbjct: 127 LDVNYGLQDIVSEGYDAGVRFGEQIAKDMISVRIGPDVRFAVVAAESYFASRDIPRHPKD 186

Query: 186 LDKHNLI-----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +H  I     T+G L     E+ N      R  G+     L  N+  ++++  + G G
Sbjct: 187 LMQHRCINLRLPTYGGLYAWEFEE-NGREIKVRVDGQ-----LVFNTIYNVLEAALDGFG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            A +P+ I K       L R +ED  +P +  +  Y
Sbjct: 241 FAYVPEDIAKLHLGTGRLHRFLED-FSPYWEGFHLY 275


>gi|167644963|ref|YP_001682626.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347393|gb|ABZ70128.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 290

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 126/291 (43%), Gaps = 22/291 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L ++Q+++S Q+ GLE  +G  LF R  RGL LT++G  
Sbjct: 9   NALRAFEASARHLSFTRAAIELCVTQAAVSHQVKGLEQRLGASLFRRLPRGLALTDEGLA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  + + ++           V     + +  T  +G   L   L  F   +P + ++
Sbjct: 69  LLPVLRDSFERMGDVLERFSAGKVMEVLSVGVVGTFAVG--WLLPRLPAFREAHPFVDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N  IDI+ +  DCA+R        +     L+T  M    AP   +  R P   + 
Sbjct: 127 LFTNNNRIDIAGEGLDCAVRFGDGAWHGTEAV-PLLTAPMTPLCAPAMAERLRTP---EA 182

Query: 186 LDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L    L+     D  P      +W A     +  P I     +S   +++  + G+G+AL
Sbjct: 183 LSSEVLLRSYRADDWP------DWFAAAG--LTPPPIRGPVFDSSWVMVEAAMQGAGVAL 234

Query: 244 LPDYIVKDNPNLVRIME----DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P  +   +    R+      ++ T  +  +  + ++   T  L AFR+++
Sbjct: 235 APSMMFARDLEQGRLARPFGLEIGTGKY--WLTWLKSRAATPALAAFRDWL 283


>gi|254737464|ref|ZP_05195167.1| transcriptional regulator, LysR family protein [Bacillus anthracis
           str. Western North America USA6153]
          Length = 277

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISAPLYESELIIVVPTGHQLAK 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
              +SI EL  + LI         +LI    + FN+     +PI       L++++  S+
Sbjct: 181 HNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|70729234|ref|YP_258970.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343533|gb|AAY91139.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 307

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 8/188 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F   A  GSF  AA +L L+ +++ + ++ LET VG++LF R  R LTLTE G 
Sbjct: 4   FSSIECFVRSAEVGSFAEAARRLGLTPAAVGKSVAKLETRVGVRLFQRSTRRLTLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQ---IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
                 +EV   L+T Q     L ++  +P+G L+++     G   +   L  FL  YPD
Sbjct: 64  LF---LAEVADSLQTIQNAVSTLADAQGRPAGTLKVSMGTVFGGLYIVPMLGAFLRRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I      DN+ +D+     D AI     +    ++ R+L   H    A+  YL+  R P+
Sbjct: 121 IHPDWHFDNRQVDLIGQGFDAAIGGGFEL-PQGVVARRLSPAHRVLVASADYLRG-RAPI 178

Query: 182 SIQELDKH 189
           +  E  +H
Sbjct: 179 NGPEDLRH 186


>gi|209516657|ref|ZP_03265510.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209502932|gb|EEA02935.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 302

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 125/252 (49%), Gaps = 8/252 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA +L +S++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDVNSLTLLVDILDAGNLSEAARRLKMSRANVSYHLNQLERSVGLQLVRRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + + L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRTIRNALIAARESVTTLGQSLQGRVRLSVPSGYGQLVMSDWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P + +    P 
Sbjct: 121 VLDVMFENRVEDLMRDEIDIAVRVMSEPPQ--NLVARDMGPVRYVACASPEFARTHGMPA 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ +L    LIT   +I + +    +L      +  EP I      ++L + Q  + G G
Sbjct: 179 TLDDLRAAPLITAA-VIGRQLRLAAYLRDERHEVLLEPTIIS---ENFLFLRQAVLAGLG 234

Query: 241 IALLPDYIVKDN 252
           + L+PDY+V+D+
Sbjct: 235 VGLVPDYVVQDD 246


>gi|14626716|gb|AAK71639.1|AF388671_2 LysR-type transcriptional regulator BdhR [Aeromonas hydrophila]
          Length = 320

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 1/185 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A  G+ + AAE   +S  + S+ +  LE  +G++LF+R  R ++LTE+G +    
Sbjct: 10  TFVHTAELGNLSKAAEAQQISPQAASKALGQLEVYLGVRLFHRTTRSMSLTEEGQRFLEA 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           T      L+     ++++  + +G LRI     + Q L+   L E+  LYP +Q ++ LD
Sbjct: 70  TQPSLLGLQQALQTVRQAREENAGPLRIVGPRTVLQPLIGPVLDEYCRLYPAVQPEIQLD 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  +   D  D   RL    +   LI R+L  + +   A+P YL+    P  +Q+L  H
Sbjct: 130 DRVGNWVADRVDVGFRLGNAPE-EGLIARRLFPLQLIICASPVYLRKHGVPRGLQDLGAH 188

Query: 190 NLITF 194
               F
Sbjct: 189 RCSAF 193


>gi|30262438|ref|NP_844815.1| LysR family transcriptional regulator [Bacillus anthracis str.
           Ames]
 gi|47527731|ref|YP_019080.1| LysR family transcriptional regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49185280|ref|YP_028532.1| LysR family transcriptional regulator [Bacillus anthracis str.
           Sterne]
 gi|165868290|ref|ZP_02212950.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0488]
 gi|167641359|ref|ZP_02399610.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0193]
 gi|170686946|ref|ZP_02878165.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0465]
 gi|170704698|ref|ZP_02895164.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0389]
 gi|177649258|ref|ZP_02932260.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0174]
 gi|190565334|ref|ZP_03018254.1| transcriptional regulator, LysR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227814751|ref|YP_002814760.1| transcriptional regulator, LysR family [Bacillus anthracis str. CDC
           684]
 gi|229604691|ref|YP_002866766.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0248]
 gi|254685016|ref|ZP_05148876.1| transcriptional regulator, LysR family protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254722422|ref|ZP_05184210.1| transcriptional regulator, LysR family protein [Bacillus anthracis
           str. A1055]
 gi|254751779|ref|ZP_05203816.1| transcriptional regulator, LysR family protein [Bacillus anthracis
           str. Vollum]
 gi|254760297|ref|ZP_05212321.1| transcriptional regulator, LysR family protein [Bacillus anthracis
           str. Australia 94]
 gi|30257069|gb|AAP26301.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           Ames]
 gi|47502879|gb|AAT31555.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49179207|gb|AAT54583.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           Sterne]
 gi|164715016|gb|EDR20533.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0488]
 gi|167510636|gb|EDR86031.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0193]
 gi|170130499|gb|EDS99360.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0389]
 gi|170668997|gb|EDT19741.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0465]
 gi|172084332|gb|EDT69390.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0174]
 gi|190563361|gb|EDV17326.1| transcriptional regulator, LysR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003114|gb|ACP12857.1| transcriptional regulator, LysR family [Bacillus anthracis str. CDC
           684]
 gi|229269099|gb|ACQ50736.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0248]
          Length = 300

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISAPLYESELIIVVPTGHQLAK 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
              +SI EL  + LI         +LI    + FN+     +PI       L++++  S+
Sbjct: 181 HNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|270262644|ref|ZP_06190915.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043328|gb|EFA16421.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 316

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 5/192 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  SGSF+ AA  L  S S+ SR ++ LE  + ++L +R  R L L+EQG + 
Sbjct: 17  EMAVFVQVVESGSFSAAARLLGTSPSATSRSVAKLEQALALQLLHRTTRKLRLSEQGEEA 76

Query: 67  H-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R  S +       +I  Q  +V+P G + ++    +G+ +L  ++  FL  YP + ++
Sbjct: 77  FLRCRSMLEAAHSVMEISGQ-GAVEPEGLISVSVPKAVGRFVLHPHIPAFLRRYPKVDVR 135

Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L+++ +D+  D  D A+R+  +P  S  LI R+L+TI     A P YL     P   Q
Sbjct: 136 LRLEDRYMDLIDDRVDLALRITDRP--SPGLIGRQLMTIEHLLCATPEYLAQHGTPQQPQ 193

Query: 185 ELDKHNLITFGD 196
           +L +H+ I  G+
Sbjct: 194 DLAQHSCIYLGE 205


>gi|260769351|ref|ZP_05878284.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260614689|gb|EEX39875.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|315181882|gb|ADT88795.1| no product [Vibrio furnissii NCTC 11218]
          Length = 309

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 14/249 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K++
Sbjct: 13  LATFILVVNEGSFTAAANKLGVTPSALSKLITRLELALSVKLFERTTRKLIITQAGQKVY 72

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                + +  +   +EL  S   +PSG L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 73  DQCLVMVNAAQQA-VELSSSDHTEPSGALTVAAPEAFLNSVLQPFVVPFLKKYPQIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + +ID+     D A +L  KP    +L+ R+L   ++   A+P YL     P    +
Sbjct: 132 RAADGEIDLFKHNIDVAFKLTDKP--DENLVLRELCKTNLVLCASPDYLAERGTPKHPTQ 189

Query: 186 LDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H+ +   +     + DF   +   TV      P      VN     +     G GI 
Sbjct: 190 LTEHDCLYLAETDKDHLWDFLKDDEFHTV------PVSGRYAVNHSQMRLNGVKNGLGIG 243

Query: 243 LLPDYIVKD 251
           +  D++V+D
Sbjct: 244 IFHDFVVQD 252


>gi|260460701|ref|ZP_05808951.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259033278|gb|EEW34539.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 296

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 1/161 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F +VAR   F  AA      ++++SR++  LE+ + ++LF R AR L LTE+G  L   T
Sbjct: 9   FNLVARHAGFGKAARATGRPKATLSRRVGELESSLDLRLFERGARDLKLTEEGRALFERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L+ T   +     +P G+LRI+  +   Q  +      F + YP++++++  ++
Sbjct: 69  GTLLAELDETAAAIASGGQRPKGRLRISAPLHFSQTAMGRIAAGFAVKYPEVRLEVTTED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP 171
           + +D+  +  D AIR+  P     L+ R  +   +   A+P
Sbjct: 129 RYVDMIEEGYDLAIRV-NPDPDEGLVGRAFLRDRLVVVASP 168


>gi|254248195|ref|ZP_04941515.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124874696|gb|EAY64686.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 330

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 131/292 (44%), Gaps = 17/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V    SF+ AA QL +S ++++R +  LE  + ++L  R  R L+LTE G +  
Sbjct: 30  MRVFTRVVELSSFSLAARQLGMSAAAVTRSVGMLEAHLNMRLLNRTTRSLSLTETGREYL 89

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  KL+  +  L + +  P G LRIA +       L   L  + + +P ++  + 
Sbjct: 90  DGCRTIIEKLDEIESNLAQVNRDPHGTLRIAASATSVAAGLGALLSTYRIEHPRVRFDVT 149

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+     D      + + +S+ + R L ++     A+P YL     P+   EL+
Sbjct: 150 TFDIQVDMVEGGYDVCFCDDQRLVNSTFVSRTLTSVRDVIVASPGYLARHGTPVEPVELN 209

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            H L+T  +   +     NW  + VD   G  RI   + L   S   +    +   GIA 
Sbjct: 210 THCLLTVSNGAAR-----NWEFSDVD---GSSRIYTGNALASTSNTMVRIAALNHMGIAQ 261

Query: 244 LPDYIVKDN---PNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP  +V D+     LV I+E  DV      V   YP     + K+++F +++
Sbjct: 262 LPHPLVADDLASGALVPILERYDVNGGPRRVSILYPSRNYLSTKVRSFIDYV 313


>gi|15601631|ref|NP_233262.1| DNA-binding transcriptional regulator DsdC [Vibrio cholerae O1
           biovar eltor str. N16961]
 gi|121586377|ref|ZP_01676165.1| D-serine deaminase activator [Vibrio cholerae 2740-80]
 gi|121726455|ref|ZP_01679719.1| D-serine deaminase activator [Vibrio cholerae V52]
 gi|147672506|ref|YP_001215202.1| DNA-binding transcriptional regulator DsdC [Vibrio cholerae O395]
 gi|153817021|ref|ZP_01969688.1| D-serine deaminase activator [Vibrio cholerae NCTC 8457]
 gi|153822355|ref|ZP_01975022.1| D-serine deaminase activator [Vibrio cholerae B33]
 gi|153825399|ref|ZP_01978066.1| D-serine deaminase transcriptional activator [Vibrio cholerae
           MZO-2]
 gi|227812442|ref|YP_002812452.1| D-serine deaminase activator [Vibrio cholerae M66-2]
 gi|229505979|ref|ZP_04395488.1| D-serine dehydratase transcriptional activator [Vibrio cholerae BX
           330286]
 gi|229510164|ref|ZP_04399644.1| D-serine dehydratase transcriptional activator [Vibrio cholerae
           B33]
 gi|229517705|ref|ZP_04407150.1| D-serine dehydratase transcriptional activator [Vibrio cholerae
           RC9]
 gi|229605511|ref|YP_002876215.1| DNA-binding transcriptional regulator DsdC [Vibrio cholerae
           MJ-1236]
 gi|254850036|ref|ZP_05239386.1| DNA-binding transcriptional dual regulator [Vibrio cholerae MO10]
 gi|255746377|ref|ZP_05420324.1| D-serine dehydratase transcriptional activator [Vibrio cholera CIRS
           101]
 gi|262158269|ref|ZP_06029386.1| D-serine dehydratase transcriptional activator [Vibrio cholerae
           INDRE 91/1]
 gi|262169145|ref|ZP_06036838.1| D-serine dehydratase transcriptional activator [Vibrio cholerae
           RC27]
 gi|298499655|ref|ZP_07009461.1| D-serine deaminase transcriptional activator [Vibrio cholerae MAK
           757]
 gi|9658309|gb|AAF96774.1| D-serine deaminase activator [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549355|gb|EAX59384.1| D-serine deaminase activator [Vibrio cholerae 2740-80]
 gi|121631050|gb|EAX63427.1| D-serine deaminase activator [Vibrio cholerae V52]
 gi|126512431|gb|EAZ75025.1| D-serine deaminase activator [Vibrio cholerae NCTC 8457]
 gi|126520118|gb|EAZ77341.1| D-serine deaminase activator [Vibrio cholerae B33]
 gi|146314889|gb|ABQ19429.1| D-serine deaminase activator [Vibrio cholerae O395]
 gi|149740945|gb|EDM55022.1| D-serine deaminase transcriptional activator [Vibrio cholerae
           MZO-2]
 gi|227011584|gb|ACP07795.1| D-serine deaminase activator [Vibrio cholerae M66-2]
 gi|227015523|gb|ACP11732.1| D-serine deaminase activator [Vibrio cholerae O395]
 gi|229345741|gb|EEO10714.1| D-serine dehydratase transcriptional activator [Vibrio cholerae
           RC9]
 gi|229352609|gb|EEO17549.1| D-serine dehydratase transcriptional activator [Vibrio cholerae
           B33]
 gi|229356330|gb|EEO21248.1| D-serine dehydratase transcriptional activator [Vibrio cholerae BX
           330286]
 gi|229371997|gb|ACQ62419.1| D-serine dehydratase transcriptional activator [Vibrio cholerae
           MJ-1236]
 gi|254845741|gb|EET24155.1| DNA-binding transcriptional dual regulator [Vibrio cholerae MO10]
 gi|255736131|gb|EET91529.1| D-serine dehydratase transcriptional activator [Vibrio cholera CIRS
           101]
 gi|262022426|gb|EEY41134.1| D-serine dehydratase transcriptional activator [Vibrio cholerae
           RC27]
 gi|262029951|gb|EEY48598.1| D-serine dehydratase transcriptional activator [Vibrio cholerae
           INDRE 91/1]
 gi|297541636|gb|EFH77687.1| D-serine deaminase transcriptional activator [Vibrio cholerae MAK
           757]
          Length = 314

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 77/148 (52%), Gaps = 12/148 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AA++L L+ S+IS +I+ LE E+GIKLF R  R + LTE
Sbjct: 16  SFQLSKLHTFEVAARHNSFSLAADELSLTPSAISHRINKLEEEIGIKLFERTHRKVVLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQES-----SVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           +G +       +YH L+ T   L +      + + SG L I +     Q  L   +  F 
Sbjct: 76  EGQR-------IYHSLQKTLNNLNQEITDIKNGETSGLLTIYSRPSFAQCWLVPRIHAFK 128

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAI 144
            LYP I ++L+  N++I       D AI
Sbjct: 129 ELYPSIDLKLLTGNENISFQGSGIDVAI 156


>gi|261340640|ref|ZP_05968498.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317053|gb|EFC55991.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 308

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 17/248 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  + S   A+++L  ++S +S++I GLE  +G+ L  R    L+LTEQG   
Sbjct: 6   EMSTFVAVVDALSVVGASQKLGTTKSVVSQRIKGLEKRLGVSLLER-GTSLSLTEQGLLF 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPS-----GKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +R    +       ++ L E +V P      G+LR+ T+       L   L +F   YP 
Sbjct: 65  YRECVRIL-----DEVSLAEEAVTPGRTDVCGRLRMTTSHTFMCTHLSPILADFAARYPQ 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++ +++ I++     D AIRL   +  S+LI R L     +   +P YL+ C  PL
Sbjct: 120 IALDIVTEDRHINMHQPGFDVAIRL-GTLPDSTLIARHLARNLTYLCTSPAYLQRCGTPL 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             +EL  H+ + +    P  +    W       +   R+ S L+ ++  S++     G G
Sbjct: 179 HPEELAHHDGLLYSHRAPGGV----WQLVHQGEVQPWRVRSRLRSDNAFSLLAAAKAGLG 234

Query: 241 IALLPDYI 248
           I +LP ++
Sbjct: 235 IMVLPLFL 242


>gi|172063649|ref|YP_001811300.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996166|gb|ACB67084.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 302

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 72/130 (55%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            ++  L  FY VAR+GS +  AE+LH+SQ +++R++  LE  +GI LF R  RG+ LTE 
Sbjct: 1   MNFTHLLAFYEVARAGSISAGAERLHVSQPAVTREVRELEDRLGIVLFDRMPRGVALTEG 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+   S ++   +T + EL E +   SG ++I  +  LG   +   +  F   +P +
Sbjct: 61  GKLLYEYASRIFTLADTAEKELAELAGLGSGHMKIGASGTLGVFFVPEAIAAFNARHPRV 120

Query: 123 QIQLILDNKD 132
            I L + N +
Sbjct: 121 AIDLTVTNTE 130


>gi|307727740|ref|YP_003910953.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588265|gb|ADN61662.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 318

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 100/199 (50%), Gaps = 8/199 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +  + SFT AAE L++ +++ +  +  LE  +G +L  R  R +++T +G+  +
Sbjct: 8   MRTFIRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTQLLVRTTRRISVTPEGAAYY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++   ++  +  ++ ++   +G+LRI     +   ++   L +F   YP++ + + 
Sbjct: 68  ERCAQILADIDEMEASIRHATDNLTGRLRIEMPGAVASAIVLPALDDFHARYPNLDLAIG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+ +D+  +  DC+I+L + +  S+L+ R L TI     A+P YL     P  + +L 
Sbjct: 128 VSNRVVDLVSEAIDCSIQLGE-LPDSTLVARHLGTIEHVTCASPAYLARYGTPTDLDDLR 186

Query: 188 KHNLITFGDLIPKCMEDFN 206
            H  +        CM   N
Sbjct: 187 GHVAV-------NCMSPHN 198


>gi|288961277|ref|YP_003451616.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288913585|dbj|BAI75072.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 318

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 71/127 (55%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   LR F  V RSGS   A+ +LH++ S+ISRQI+ LE ++G++LF R  RG+  +  
Sbjct: 1   MNATALRYFLEVVRSGSIADASARLHVASSAISRQIAHLEADLGVELFERRPRGMVPSYA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R    V+ + E    EL+      SG++R+A T   G +L+   +  F   +P I
Sbjct: 61  GDLLARHAQRVFLEEEAIVTELKRLRGLASGRVRVAGTEGFGMSLIPAAIHSFRDRHPGI 120

Query: 123 QIQLILD 129
           +I+L +D
Sbjct: 121 RIELRVD 127


>gi|163803879|ref|ZP_02197722.1| transcriptional regulator [Vibrio sp. AND4]
 gi|159172317|gb|EDP57201.1| transcriptional regulator [Vibrio sp. AND4]
          Length = 298

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 139/299 (46%), Gaps = 16/299 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF ++   GS + AA+ L + ++ +SR +S LE  VG +L +R  R  +LTE G K  
Sbjct: 7   LKVFIIIVEQGSLSGAAKLLDIEKTKVSRYLSELERWVGTRLLHRTTRTQSLTEAGEKTL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++          + + +   SG+LRI+    +    L   + EF   +P+++I+LI
Sbjct: 67  THAYQIDSIAGDINSIIDQKNNSLSGRLRISCAYYMVNAFLLEAVNEFCAKWPEVKIELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++D  +  +  D A+R    +   +++ +K+        A+P YL     P++ Q L 
Sbjct: 127 VTDRDTHLIEEGIDLAVRTSNHLD-LNVVAKKIGMCRSVVVASPQYLLANGTPIAPQSLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS--IMQYCVLGSGIALLP 245
           +HN ++F        +   W    +  +    IS  QV + +S  +++  + G GI+  P
Sbjct: 186 EHNCLSFS-----YADKHKWYFYREDNVETVPISG-QVTANVSNILLKATLSGVGISQQP 239

Query: 246 DYIVKDNP-----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +V   P      LV+++ D       +Y  Y    + T   ++F +FI  K  + +F
Sbjct: 240 --LVSSLPLIKSGQLVQLLSDWELKKNGIYLVYASRKQMTPLHRSFIDFITEKISNDEF 296


>gi|91780987|ref|YP_556194.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91693647|gb|ABE36844.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 303

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 4/134 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++F+ + +  F  VA + SF  AAE  H SQS++S ++S LE  +G++LF+R  R +TLT
Sbjct: 3   LTFNLNNVITFLAVAETLSFRRAAEHTHTSQSAVSARVSQLEDRLGVRLFHRTTRQVTLT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L  V       +E     L++ +   SG+L IA    +GQ +L   + EF   YP
Sbjct: 63  AEGLQLFVVARTAVEDMERVAESLRKKAALQSGELTIAAVPSIGQTVLPTIMGEFHRRYP 122

Query: 121 DIQIQLILDNKDID 134
            + ++L+    D+D
Sbjct: 123 GVTLKLL----DVD 132


>gi|254505570|ref|ZP_05117717.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219551687|gb|EED28665.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 297

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 1/194 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +W     F  +A  GS + AA  L +SQ ++SRQ+  +E  +G  LF R  +GLTLT
Sbjct: 1   MNSNWQWWHYFLAIAEHGSLSQAAISLDVSQPTLSRQLQLMEKRLGQPLFDRSTQGLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L      +    E         +   SG++R+A    +  + L   L  F+  YP
Sbjct: 61  GFGESLLEECRNMQASAERLARLAAGQATSLSGRIRLAANELIALHYLPKILPLFMDTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ +++ + N+   +    AD AIR+  P Q   LI R+L  I +  +A+  YL+    P
Sbjct: 121 EVSLEVEVSNQVSSLDKRDADVAIRMFPPTQ-QDLICRRLFDIPLGFFASSDYLRVNGTP 179

Query: 181 LSIQELDKHNLITF 194
            + Q L +H +I +
Sbjct: 180 DTAQALFQHRIIGY 193


>gi|71278369|ref|YP_270272.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144109|gb|AAZ24582.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 323

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 4/142 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR+GSFT AA+ L L+Q +ISRQ++ LE ++ + LF+RH + ++LTE G    
Sbjct: 21  LAAFDAAARTGSFTAAAKDLALTQGAISRQVNALEMQISVNLFHRHKQNISLTEAGKTYA 80

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +     + +  + L      P G  L IA     G   L   L +FL  +P I I  
Sbjct: 81  KEVNSALSHIRSATLNLM---TNPDGGILNIAILPTFGSRWLMPRLADFLAKHPRITINT 137

Query: 127 ILDNKDIDISMDYADCAIRLRK 148
           +      D S +   CAI   K
Sbjct: 138 VCKLSQFDFSHEDIHCAIHFGK 159


>gi|323494392|ref|ZP_08099501.1| transcriptional regulator, substrate-binding of LysR family protein
           [Vibrio brasiliensis LMG 20546]
 gi|323311322|gb|EGA64477.1| transcriptional regulator, substrate-binding of LysR family protein
           [Vibrio brasiliensis LMG 20546]
          Length = 295

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 18/202 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L  F+ +A++G+FT AA+QL ++QS++S  I  LE ++G+KL  R  R ++LT +
Sbjct: 1   MDLKRLHYFHQLAQTGNFTKAADQLGIAQSALSTSIKKLEHQLGLKLINRAERQMSLTTE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R    +   +E  + E+QE     SG +    +  L    L   L++F  +YP I
Sbjct: 61  GQVLLRHAKIILEDVEQAEKEMQELKGLTSGVINFGVSAMLASYYLPDALEQFKKVYPGI 120

Query: 123 QIQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
           QI +          +L N ++D+++   D   R  + I+ S L Q ++         A H
Sbjct: 121 QINIHEAGTATLGQMLVNGELDLALIRGD---RQHEQIRQSVLAQDQIAA----CVPAQH 173

Query: 173 YLKNCREPLSIQELDKHNLITF 194
              N RE ++++E  +  L+ F
Sbjct: 174 PFAN-RESITMEEFCQQPLVLF 194


>gi|157373809|ref|YP_001472409.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157316183|gb|ABV35281.1| putative transcriptional regulator, LysR family [Shewanella
           sediminis HAW-EB3]
          Length = 312

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 13/244 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  + +      A  +L LS ++++ ++  LE   GIKL  R  R ++LT+ G 
Sbjct: 4   FSDMEMFASIVKHQGLAAAGRELGLSPATMTARLQALEERYGIKLLNRSTRHISLTDSGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+   E+   +  T+  LQ+   +  G L+I+   D+G+  +   L EF+  YP++  
Sbjct: 64  LYHKACLEILDSVRGTENLLQKGVKEVKGSLKISAPKDVGKQYILPILSEFVERYPEVTP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L++   +I+    D  IR  + +  S+LI R+L +      A+P YL     PL+ Q
Sbjct: 124 YLYLNDHLSNIAESGIDVVIRYGE-LADSNLILRRLASSRRVLCASPEYLVKKGTPLTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-----IMQYCVLGS 239
           +L  H+ +         +     L T    + E R S   V    S     I ++ + G+
Sbjct: 183 DLAGHDCLAM-------IRSHEELKTWHFQLNEQRKSVTVVPKRFSDDGEVIRRWALEGA 235

Query: 240 GIAL 243
           GIAL
Sbjct: 236 GIAL 239


>gi|157371883|ref|YP_001479872.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323647|gb|ABV42744.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 307

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 73/125 (58%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA +GS + AA+ + +SQSS++  I  LET++G++LF RHA+G+ LT QG + 
Sbjct: 6   QIRHFIAVAETGSISAAAQAVFVSQSSLTLAIQQLETDIGVRLFDRHAKGMNLTHQGHQF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R +  +   ++  +  LQ  +   +GKL I  T  +    L   LK F   YP++ IQ+
Sbjct: 66  LRQSYLILATVDNAKRSLQLGTESLTGKLTIGVTSLVAGYFLVELLKRFKSAYPNVTIQM 125

Query: 127 ILDNK 131
           I D +
Sbjct: 126 IEDER 130


>gi|77460531|ref|YP_350038.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384534|gb|ABA76047.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 304

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 12/251 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+  L +   + R GS   AA+ + +  S++ R +  LE  +G +LF +   G   T  
Sbjct: 22  LDFPDLALILALVRGGSLARAAQLMKVDVSTVFRAVRRLEASLGQQLFEKSRAGYLPTSL 81

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              L          LE  +I +++     SG +R+  T  + Q LL   L +F+  YP +
Sbjct: 82  AQTLAEQAERAEQALEAARIGVEQGGEVVSGTVRLTCTDSVLQGLLLPALAQFMPNYPAL 141

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            I+L   N   ++S   AD A+RL R P +   L+ R+L  I     A+  YL+     +
Sbjct: 142 SIELSTSNDFANLSRRDADIALRLTRTPPE--HLVGRELAKISYRVCASQRYLQK----V 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     I   D +P       W      P   P   C   NS LS+ +    G G+
Sbjct: 196 EAADLAALTWIAPDDFLPD-HPTVAWRRQ-QLPGVTPNYRC---NSMLSVTELVRAGLGV 250

Query: 242 ALLPDYIVKDN 252
           A LPD+++ + 
Sbjct: 251 AALPDFLINEG 261


>gi|163734529|ref|ZP_02141968.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
 gi|161392022|gb|EDQ16352.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
          Length = 295

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 134/295 (45%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR GS T AA +L L+QS++SRQ+  LE ++GI+LF R  R L LT +G+ 
Sbjct: 12  NALTCFEAVARLGSATDAAAELSLTQSAVSRQLKALEGQLGIELFERRGRQLVLTARGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    +   L    + ++  +    G L ++     G + L   L++F   +P++ + 
Sbjct: 72  YVKEVRTILQHLTRASVAVRTDAR--GGALNLSILPAFGMHWLAPRLQDFAQTHPEVTVN 129

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           L       D    + D AI   R+   ++  +   L+   + A  AP  +     PLS  
Sbjct: 130 LSTRLAPFDFRDTHFDAAIHFGREDWPATDYL--PLMPETVVAVCAPSLIAT---PLSDP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + +  H+L+   +  P+      WL ++D     P    +  + + ++ Q  V G G+AL
Sbjct: 185 RGILSHDLMHL-ETRPRGW--VRWLRSLDIDASLP--PGMVFDQFSTMAQAAVHGLGVAL 239

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFIFLKAR 295
           LP ++     N   + +       S   YF  +P   + +  L +FR ++  +AR
Sbjct: 240 LPTFVADPFLNSGQLVLASPHTNQSIGSYFLVWPRDREESHSLTSFRTWLRKQAR 294


>gi|186472546|ref|YP_001859888.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184194878|gb|ACC72842.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 324

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 129/301 (42%), Gaps = 24/301 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     VAR  SF  AA +L +S S++S  ++ LE  +G++LF R  R ++L+E G++ 
Sbjct: 8   ELEAVLAVARHRSFRAAANELGVSTSALSHAVAALEARIGVRLFNRTTRSVSLSEAGAQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSV---KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                 V   L + ++ L+++      PSG LRI T++      +   +  FL  YP+++
Sbjct: 68  ---VDSVAPALSSIRVALEQAGSFRDTPSGTLRINTSVGAAHQAMPVFIA-FLERYPEMK 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++ + + IDI ++  D  IRL + +    +              +P Y      P + 
Sbjct: 124 LDIVTEGRLIDIVVEGFDAGIRLAETVPQDMIAVPFGDRQRFAVVGSPAYFAQHTPPRTP 183

Query: 184 QELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +L +H  I      G +     E       +D   G+     L ++    ++     G 
Sbjct: 184 HDLARHRCIRTRMPSGSIYQWEFERHGETVRID---GK---GALTLDESGLMLDAARAGV 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+  L ++ V    +   L+R+++D   P   +   YP        L+A    I    RD
Sbjct: 238 GLTYLSEWTVAADLEAGTLIRVLDDWTPPLDGLCLYYPGRRHAPAGLRALVAMI----RD 293

Query: 297 W 297
           W
Sbjct: 294 W 294


>gi|116691661|ref|YP_837194.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116649661|gb|ABK10301.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 299

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 125/299 (41%), Gaps = 12/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F  AA    LS S +S  +  LE  +G++L +R  R +  T
Sbjct: 1   MQTDLGDLNAFMAVARASGFRDAARVTGLSASGLSEAVRRLEARLGVRLLHRTTRSVVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +    ++      + E   +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGERLLARLAPALTEVAAALDGIDEFRGRPAGTLKLNVPVSASRLVLPAIVPRFLDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCRE 179
           DI++++  D   +D+     D  IR  + ++   +       I   A  AAP YL     
Sbjct: 121 DIRLEVTADESFVDVLAAGCDAGIRYDERLEQDMIAVPIGPRIQRFATAAAPDYLDRHGR 180

Query: 180 PLSIQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QY 234
           P   ++L  H  +      G + P   E    +  V+ P   P +  +Q+     +M   
Sbjct: 181 PRHPRDLLGHRCMRGRFASGAMPPWEYERDGEVVRVE-PAAGPLL--VQIGGATELMVDA 237

Query: 235 CVLGSGIA-LLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G+GI  L  D++    D+  L  ++E    P    +  YP        L+AF +FI
Sbjct: 238 AIAGTGILYLFEDWVRPHFDSGALEPVLEPWWRPFSGPFLYYPGRRLVPPALRAFIDFI 296


>gi|209515518|ref|ZP_03264383.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503985|gb|EEA03976.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 326

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 15/192 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F    R GSF  AA +L ++  ++S+ I+ LE E+G++LF R  R L+LT +G +  
Sbjct: 7   LQPFVEAVRCGSFIAAASRLQVTPPAVSKSIAALERELGVRLFNRTTRKLSLTSEGRQFF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  + +  +L+    +++ S   P G ++++ T   G++ L   L  FL  YP ++I + 
Sbjct: 67  QRVAPLLSQLDEAVADVRRSPEHPEGLIKVSVTPTFGRHCLSPVLAAFLQRYPLVEIDIS 126

Query: 128 LD-------NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            D       N  ID+S+ +A          + ++ + R L    +   A+  YL+    P
Sbjct: 127 YDEIAPSLVNDGIDVSIQHARG--------RGTNHVSRPLCDYPIVLVASRDYLERKGVP 178

Query: 181 LSIQELDKHNLI 192
            S  EL +H  +
Sbjct: 179 QSPDELAEHEFV 190


>gi|196033720|ref|ZP_03101131.1| transcriptional regulator, LysR family [Bacillus cereus W]
 gi|218903571|ref|YP_002451405.1| transcriptional regulator, LysR family [Bacillus cereus AH820]
 gi|228936945|ref|ZP_04099688.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228946041|ref|ZP_04108379.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229121980|ref|ZP_04251198.1| Transcriptional regulator, LysR [Bacillus cereus 95/8201]
 gi|195993400|gb|EDX57357.1| transcriptional regulator, LysR family [Bacillus cereus W]
 gi|218537973|gb|ACK90371.1| transcriptional regulator, LysR family [Bacillus cereus AH820]
 gi|228661508|gb|EEL17130.1| Transcriptional regulator, LysR [Bacillus cereus 95/8201]
 gi|228813629|gb|EEM59912.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228822724|gb|EEM68613.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 300

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 137/293 (46%), Gaps = 40/293 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I++ ++          L   ++DI + +        K I S+ L + +L+ +       
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFLPVQ---DKEIISTPLYESELIIV----VPT 174

Query: 171 PHYLKNCREPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQ 224
            H L      +SI EL  + LI         +LI    + FN+     +PI       L+
Sbjct: 175 GHQLAEHNH-VSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LE 223

Query: 225 VNSYLSIMQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +++  S++Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 224 ISTMESLIQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|87198876|ref|YP_496133.1| LysR family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134557|gb|ABD25299.1| transcriptional regulator, LysR family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 316

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 132/294 (44%), Gaps = 17/294 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DW+  + F  VAR+G    AA  + +  ++I R++  LE   G  LF +   G  LTE
Sbjct: 21  SNDWNDFQAFLAVARAGQLARAASAMGVDATTIGRRLRRLEARTGATLFEQTREGQVLTE 80

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +     E   +  +   E        +G LR + +   G  ++   L+ F+   P 
Sbjct: 81  AGEAML-AEVEAMDQAASRIAEHAAGGGGIAGLLRASLSEGFGSWIVAPALRGFVEANPR 139

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+  +  +  S   AD A+ L +P ++  +I  KL    +  YA   YL     P 
Sbjct: 140 LVVDLVASSGFLSPSKREADLAVTLSRP-RAGPVIAGKLSDYTLRLYATRGYLSQKGWPE 198

Query: 182 SIQELDK-HNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV-L 237
              EL + H L+ +   IP  +   +  +LA +     EP +S    +S ++     +  
Sbjct: 199 RPAELARGHRLVGY---IPDLLYAPELRYLAEI-----EPDLSATVRSSSINAQHRMIAA 250

Query: 238 GSGIALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GI +LP +I   +  LV ++ D  IT SF  +    +   N  +++AF++++
Sbjct: 251 GAGIGVLPCFIGDSDKWLVPVLPDRRITRSF--WLVTHKDTHNLARVRAFKDWL 302


>gi|327191871|gb|EGE58866.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 291

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 14/186 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V  R  +F  AAE+L ++Q ++++Q+ GLE ++G+ LF R  RGL LT QG+ 
Sbjct: 12  NALRAFEVSGRRLNFRTAAEELGITQGAVAQQVRGLEGQLGLMLFQRLPRGLALTAQGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                ++V    +T          +P   + I+ T  +   LL   L E     PDI ++
Sbjct: 72  ---YLADVTRAFDTLGEATGRLLARPE-TVTISVTPTVAAKLLIPRLAELYTALPDIDLR 127

Query: 126 LILDNKDIDISMDYADCAIRL-RKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +      D   D  D A+RL R+P    +Q+  L +++LV     A A+PH +K    P
Sbjct: 128 TVATEALADFDRDQVDIAVRLTRQPFPATLQAELLFRQELV-----AVASPHLVKGLTLP 182

Query: 181 LSIQEL 186
           L+ + L
Sbjct: 183 LANEAL 188


>gi|167614896|ref|ZP_02383531.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 297

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 121/285 (42%), Gaps = 12/285 (4%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G+KL+  + E
Sbjct: 2   AIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAGNKLYSASQE 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
               L      ++    + +G LR+A         L      F+  +P I+++++ ++ +
Sbjct: 62  FVSGLYDVIGSIRRLRHESTGLLRVAAPSGFSTAHLSSIAATFIHQHPQIELEIVCNDDE 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           ID+  +  D A     P +      + L        A+P Y +    P    +L   + I
Sbjct: 122 IDLVGERVDLAFETGWP-KKKGFRMKMLGAFEQMLVASPEYSRKHAVPRHPDDLPGSHWI 180

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252
             G L       ++      R +       L+V S L   Q  + G+GI+  PDY+V ++
Sbjct: 181 GHGGL---ANLSYSVFGNEGRSVRVQTSGRLKVKSVLLAHQMALAGAGISAFPDYLVAED 237

Query: 253 ---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                L R++     P   +Y     A + + +  + R  +FL A
Sbjct: 238 LREGRLHRLLPTWTMPKGGIY-----AFRTSPRQASVRERLFLSA 277


>gi|257126304|ref|YP_003164418.1| LysR family transcriptional regulator [Leptotrichia buccalis
           C-1013-b]
 gi|257050243|gb|ACV39427.1| transcriptional regulator, LysR family [Leptotrichia buccalis
           C-1013-b]
          Length = 303

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 130/257 (50%), Gaps = 24/257 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++ D   L++F+   +  SFT AA+ L +SQS++S QI  LET++GI+L  R+++   LT
Sbjct: 5   ITVDVHHLKIFFEACKEKSFTKAAKNLFISQSAVSIQIKKLETKLGIQLIERNSKNFRLT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L+R++ +V+ K+   + E+++ S    GK+ I  T ++G+ +L   + EF    P
Sbjct: 65  FAGKELYRMSKDVFDKILRVEKEMEKISHYGKGKICIGATHNIGEPVLPRIMVEFKKHNP 124

Query: 121 DIQIQLILDNKDI---DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY--AAPHYLK 175
           +I+  L + N++     +     D A+     I+   +   K++    + +   A   + 
Sbjct: 125 EIEFDLYIKNRESLVKHLKEGTVDIALMEEYFIEDKEI---KVIETEEYPFVVVAGKEIS 181

Query: 176 NCREPLSIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
           + +E   +Q L +  ++T  + DL  K +  FN+         E RI    +N  +  M+
Sbjct: 182 DYKELKEMQLLKRDTVLTSKYLDLFEKII-GFNF---------ENRIV---INGSIETMK 228

Query: 234 YCVL-GSGIALLPDYIV 249
             +  G G A+LP Y V
Sbjct: 229 NLIKSGLGFAVLPYYSV 245


>gi|167585318|ref|ZP_02377706.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 314

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 14/298 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F   AR  +F+ AA++L ++  ++S Q+  LE E+G++LF R+ + L LT  G +
Sbjct: 10  NAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEEELGVQLFTRNGKRLCLTNAGIR 69

Query: 66  -LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +V + +   +E T+ E++ S      +L I+         +   +  F+  +P+I +
Sbjct: 70  YAQQVRTALMMLVEATR-EVRASDR--DRRLVISMLSSFAARFVTPRIGSFIERHPEIDV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N   D + D  D AIR          ++  L      A A    L     P +  
Sbjct: 127 ELQSTNTLTDFARDDVDIAIRFGFGTYPGLYVEPLLDEAFFPACAP--TLNGGVLPKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++NL+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+
Sbjct: 185 DLARYNLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSS-NLLQAAIDGQGIALV 239

Query: 245 PDYIVKDNPNLVRIME--DVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
              +      L R++   D+  PS +  +F  P  L  T +++AFR +I  +  ++K 
Sbjct: 240 RRSLAVHELRLGRLVRLFDIDGPSPWNYFFVCPPPLLGTPRVQAFRTWILQEVAEFKL 297


>gi|167583889|ref|ZP_02376277.1| transcriptional regulator [Burkholderia ubonensis Bu]
          Length = 312

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 2/190 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F   A  GSF++AA +  L    +S  I  LE E+ I+LF R  R L LT +G +
Sbjct: 7   DDLALFVRTAALGSFSNAAREADLLPGQVSAAILRLERELDIRLFARSTRSLKLTAEGEQ 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   L   +  L     +  G L+I+   DLG+N+L   L  F   +P + ++
Sbjct: 67  YLPYAHEVLSTLREGRERLHGERQELQGTLKISAPSDLGRNMLLPWLTGFRDAHPKLVLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSIQ 184
           L L +  +D+  D  D AIR     +S+S +   L   +     AAP YL+    P S+ 
Sbjct: 127 LSLSDLVVDVFRDPVDVAIRY-GAAESASYVALPLAENNRRVLVAAPAYLERHGRPSSLD 185

Query: 185 ELDKHNLITF 194
           EL  H+ + +
Sbjct: 186 ELTMHSCLLY 195


>gi|121597893|ref|YP_989865.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|238563347|ref|ZP_00438998.2| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|251768051|ref|ZP_02269326.2| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254200736|ref|ZP_04907101.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254204709|ref|ZP_04911062.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|121225691|gb|ABM49222.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|147748348|gb|EDK55423.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754295|gb|EDK61359.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|238520858|gb|EEP84314.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243060940|gb|EES43126.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 330

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 25/294 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 48  NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFALFMRHARGLTLTVEGEQ 107

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +      +   +  F   +PD+ +Q
Sbjct: 108 LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MRWVLPRIMRFQREHPDLHVQ 162

Query: 126 LILDNK-DIDISMDYADCA----IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    + D+D   +  D A    I     + +  L   +L  +      AP  L+    P
Sbjct: 163 MTTTWRHDVDFQSEPFDAAIVYGISPGPDVAAVPLFDERLTPV-----CAPDLLEG--RP 215

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
           L+ +++L  H L+  T      +   D+   A VD P   P    L + +  +   + V 
Sbjct: 216 LARVEDLACHTLLHPTRDHRDWRRWLDYAGAAGVD-PDRGPSFDSLDLATSAATQGFGVA 274

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LG       D+  +    L   ++ V       YF YPE++    K++ F  ++
Sbjct: 275 LGDLTLSEEDFAAR---RLAMPLDIVQRTGARYYFVYPESVAQQQKIRRFSAWL 325


>gi|76817855|ref|YP_337705.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|242310949|ref|ZP_04809966.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254300314|ref|ZP_04967760.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|76582328|gb|ABA51802.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|157810407|gb|EDO87577.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|242134188|gb|EES20591.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 330

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 25/294 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 48  NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFALFMRHARGLTLTVEGEQ 107

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +      +   +  F   +PD+ +Q
Sbjct: 108 LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MRWVLPRIMRFQREHPDLHVQ 162

Query: 126 LILDNK-DIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    + D+D   +  D AI         + +  L   +L  +      AP  L+    P
Sbjct: 163 MTTTWRHDVDFQSEPFDAAIVYGMSPGPDVAAVPLFDERLTPV-----CAPDLLEG--RP 215

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
           L+ +++L  H L+  T      +   D+   A VD P   P    L + +  +   + V 
Sbjct: 216 LARVEDLACHTLLHPTRDHRDWRRWLDYAGAAGVD-PDRGPSFDSLDLATSAATQGFGVA 274

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LG       D+  +    L   ++ V       YF YPE++    K++ F  ++
Sbjct: 275 LGDLTLSEEDFAAR---RLAMPLDIVQRTGARYYFVYPESVAQQQKIQRFSGWL 325


>gi|254356872|ref|ZP_04973147.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|148025899|gb|EDK84022.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
          Length = 400

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 82  DNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQR 141

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    PD+ ++
Sbjct: 142 YFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 201

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  +
Sbjct: 202 LTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPTTPDD 261

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSG 240
           L KH  +          E   W   ++R  G+  +  L     Q N   ++      G G
Sbjct: 262 LAKHVCLRLDTPASPGGE---W--RLERDDGDETVYALPPAPFQANVPDALSVAVRAGRG 316

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F
Sbjct: 317 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTF 365


>gi|134278991|ref|ZP_01765704.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|134249410|gb|EBA49491.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 284

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 25/294 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 2   NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFALFMRHARGLTLTVEGEQ 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +      +   +  F   +PD+ +Q
Sbjct: 62  LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MRWVLPRIMRFQREHPDLHVQ 116

Query: 126 LILDNK-DIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    + D+D   +  D AI         + +  L   +L  +      AP  L+    P
Sbjct: 117 MTTTWRHDVDFQSEPFDAAIVYGMSPGPDVAAVPLFDERLTPV-----CAPDLLEG--RP 169

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
           L+ +++L  H L+  T      +   D+   A VD P   P    L + +  +   + V 
Sbjct: 170 LARVEDLACHTLLHPTRDHRDWRRWLDYAGAAGVD-PDRGPSFDSLDLATSAATQGFGVA 228

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LG       D+  +    L   ++ V       YF YPE++    K++ F  ++
Sbjct: 229 LGDLTLSEEDFAAR---RLAMPLDIVQRTGARYYFVYPESVAQQQKIQRFSAWL 279


>gi|257094002|ref|YP_003167643.1| LysR family transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046526|gb|ACV35714.1| transcriptional regulator, LysR family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 306

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 132/300 (44%), Gaps = 18/300 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   GS   AA +L  +++ IS+Q+  LE   G++LF R  R L LT  G   ++  
Sbjct: 10  FVRVVEIGSMAAAARRLDCTRAQISKQVGELEKAFGVRLFERTTRKLRLTPAGEIFYQHA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 ++   + ++ S+  P G LRI+ ++  G+  +   L      YP ++ +L+L +
Sbjct: 70  LRALAVVDGADLAVRISTEVPCGVLRISASLTFGRLYIAPLLPRLAERYPQLECELLLSD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             +D+  D  D A+RL K       + R L  +     AAP YL     P +  EL  H 
Sbjct: 130 DLVDLIDDRIDLALRLTK-TPPEDAVARPLTLVKRLICAAPAYLDTHGRPATPAELSSHQ 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              F    P    +  W   +DR   E   P  S  ++N+   I+   + G G+A+LP Y
Sbjct: 189 CFDF----PHPYGNGRW-RLLDRQGEETAVPVSSRFRINNVDCILDALLAGHGMAILPTY 243

Query: 248 IVKD---NPNLVRIMEDV-ITPSFT--VYFCYPEALKNTGKLKAFRN---FIFLKARDWK 298
           + +    +  L  +++D     SF   VY CY  +     K++   +    +FL    W+
Sbjct: 244 LCRSYLADGRLHAVLDDYEPLSSFGRHVYACYTPSRVRLAKVRVVLDELEALFLPVPPWE 303


>gi|66044685|ref|YP_234526.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255392|gb|AAY36488.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 293

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 135/296 (45%), Gaps = 19/296 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +F      G+ T A  +L L  S  S++++ LE  +G++L +R  R +TLTE 
Sbjct: 1   MDIQALNLFVRSMEMGNITAAGAELGLVPSVASQKLAKLEKSLGMRLLHRTTRQVTLTED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      S +   ++       +S   P   LRI+      +  L   +  FL  +P++
Sbjct: 61  GALFLPHASRIIAAVDEAYFTTVKSQETPKRVLRISAPGSFARVCLMPAVTRFLRSHPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L ++  +++    D AIR+   ++ S+ + RKL        A+P YL+   +P  
Sbjct: 121 KIDLVLSDEVQNLTEIGIDVAIRI-AALKDSTHVARKLGNDTRILCASPAYLEQKGKPGE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLG 238
            ++L +H+ IT G+        +++      P     G  R++C +     +     V G
Sbjct: 180 PEDLSRHDCITLGE-----ENRWHFAGNARNPFSIINGSFRVNCGEAARIAA-----VEG 229

Query: 239 SGIALLPDYIVK---DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA +  +  +      +LV ++    +  S  V+  YP + + + K +AF +F+
Sbjct: 230 LGIASISLWNARASLSKGDLVEVLSSFALEQSRAVWAIYPSSRQISSKARAFVDFL 285


>gi|34498252|ref|NP_902467.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34104106|gb|AAQ60465.1| probable transcriptional regulator, LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 297

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 127/299 (42%), Gaps = 15/299 (5%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M FD    LR+F   ++ GSF+ A  +  LS ++ S  I  +E  +  +LF R  R L L
Sbjct: 1   MPFDRLADLRLFQDASQLGSFSAAGRKHGLSPAAASACIQRMEAALNARLFQRTTRRLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G        +    LE  +  LQ++  + SG +R++   DLG+N L   L  F   +
Sbjct: 61  TEAGETYLAYCRQALELLEEGEHRLQQAQQELSGVIRLSAPSDLGRNRLLDCLDRFGAEH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +   L L +   D+  D  D AIR  +P   SSL+ R+L        AAP  L+   +
Sbjct: 121 PAVHFSLSLSDTPADLIGDDIDLAIRYGQPA-DSSLVARQLAASRRVVCAAPSLLEKLGQ 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL----QVNSYLSIMQYC 235
           P   Q+L     +T        M ++ +     R  GE R   L    Q N    + ++ 
Sbjct: 180 PSHPQDLAGLPTLTL-TTGHGPMNEWRY-----RDKGEIRSLRLERVRQSNDGEVLRRWA 233

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           V G G A      + D+     L  +++D       ++  YP       +++   +F+ 
Sbjct: 234 VQGHGFAYKSRLDIADDLAAGRLTTVLDDYFIEPAPLHLLYPGHRLQPARIRRLIDFLL 292


>gi|326793680|ref|YP_004311500.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326544444|gb|ADZ89664.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 308

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 8/247 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V   GSFT+A ++L L  SSISR IS LET +  KL  R  R + +   G ++
Sbjct: 12  ELAVFVAVVEEGSFTNAGKKLGLPPSSISRTISKLETGLTTKLLERTTRRVAVNSIGREV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + +  ++     Q      +G+LRIA      + +L   + EF+   P + +++
Sbjct: 72  FESAKNMLNSAKSAVDITQSRQNHLTGELRIAAPKAFTKLILASIVFEFMEANPTLTLKV 131

Query: 127 ILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              +  ID S    D   RL  +PI    L+ RK+  +     A+P YLK  + P   ++
Sbjct: 132 TASDHIIDPSSGEVDLIYRLTNQPI--DGLVARKVANVKQVICASPTYLKRKQIPSRPED 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALL 244
           L +HN I+ G+     +  F+     ++   +   S    +++  I +  VL   GI+  
Sbjct: 190 LTQHNCISLGEFEGDHIWYFDQSGHTEKVKTQGNFS----SNHSEIRKEAVLRHMGISAF 245

Query: 245 PDYIVKD 251
           P++ VK+
Sbjct: 246 PEFAVKE 252


>gi|301053950|ref|YP_003792161.1| LysR family transcriptional regulator [Bacillus anthracis CI]
 gi|300376119|gb|ADK05023.1| transcriptional regulator, LysR family [Bacillus cereus biovar
           anthracis str. CI]
          Length = 300

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 24/285 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEVEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +I++ ++ L   DI   +   +  I +   P+Q   +I   L    +       +     
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELNIGITFLPVQDKEIISTPLYKSELIIVVPTGHQLAKH 181

Query: 179 EPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
             +SI EL  + LI         +LI    + FN+     +PI       L++++  S++
Sbjct: 182 SHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LEISTMESLI 231

Query: 233 QYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 232 QMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|300721722|ref|YP_003710998.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
 gi|297628215|emb|CBJ88770.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
          Length = 292

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 8/189 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F +  R GSF  AA+++ ++Q ++++Q+  LE  +GI LF+R  RGL LT  G+ 
Sbjct: 11  NTLRAFAISGRQGSFRAAADEMCVTQGAVAQQVRSLEQHLGIALFHRQPRGLVLTPSGAA 70

Query: 66  LHRVTSEVYHKL--ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             R  +  +  L   T+++  Q ++V       I+ T      LL   L EF    P++ 
Sbjct: 71  YLRDVTRAFDILTESTSRLLAQPNTVT------ISVTPTFAAKLLIPRLAEFHAELPEVG 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +      +   D  D AIRL      S L    L    +   A+PH +     PLSI
Sbjct: 125 LRTVATEALSNFDRDQVDIAIRLTHMPFPSELETTLLFNQELVVVASPHLVGGLTLPLSI 184

Query: 184 QELDKHNLI 192
           ++L    L+
Sbjct: 185 KQLQTLPLL 193


>gi|262280433|ref|ZP_06058217.1| LysR substrate binding domain-containing protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258211|gb|EEY76945.1| LysR substrate binding domain-containing protein [Acinetobacter
           calcoaceticus RUH2202]
          Length = 324

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 19/250 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G 
Sbjct: 20  FDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLGQ 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +V  ++E  +  L +   +P G ++++    +    ++  L +FL  YP ++I
Sbjct: 80  EFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVEI 139

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L ++ +DI  D  D AIR   +P + S+LI R ++       AAP  L+  R     
Sbjct: 140 SLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVAAPELLQG-RTIEHY 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-------ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            EL     I+ G       +++ W         +VD P  +PRI     ++ L+ + Y V
Sbjct: 199 SELQDFPSISLG----TQKQNYIWHLCNIRNGESVDVPY-QPRIK----SNDLAGVYYAV 249

Query: 237 L-GSGIALLP 245
           + G GIA LP
Sbjct: 250 MDGLGIADLP 259


>gi|121610258|ref|YP_998065.1| LysR family transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121554898|gb|ABM59047.1| transcriptional regulator, LysR family [Verminephrobacter eiseniae
           EF01-2]
          Length = 300

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 17/187 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF VVAR+ + T AA +L+++QS++SRQI+ LET +G++L  R   G++LT  G  
Sbjct: 9   NPLRVFEVVARTHNLTAAAAELNVTQSAVSRQIATLETYLGMELLRRERHGVSLTRAGHS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGK--LRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     + ++ +    L    VK SG+  LR+ T        L   L EF  L+P I+
Sbjct: 69  YAQQLLPAFEQIASATRAL----VKGSGERALRVRTYTTFAAKWLIPRLGEFRRLHPGIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLK----N 176
           + +     D+D   D AD A++    R P ++ +L    L    +    +P YLK    N
Sbjct: 125 VNITNAVPDVDFDRDKADVAVQFGAGRWP-RTQALF---LFGDEIEPVCSPAYLKQYAPN 180

Query: 177 CREPLSI 183
            + P+S+
Sbjct: 181 AKFPVSL 187


>gi|54302278|ref|YP_132271.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46915700|emb|CAG22471.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 304

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 135/294 (45%), Gaps = 25/294 (8%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  +  SGS + A  +L+ S +++S  ++ LE +   +L  R  R   LT +G   ++
Sbjct: 18  RTFLEIVHSGSISAAGRRLNASPANVSAVLARLEKQYDARLLSRTTRNQQLTYEGEHFYQ 77

Query: 69  V-------TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
                     E+ + L + Q +LQ       G + I+ T D G+N+L   L EF+ LYP 
Sbjct: 78  FCLLAADQEDELLNHL-SKQQQLQ-------GSIAISCTCDFGRNVLVPLLDEFMTLYPQ 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L +K  D+  +  D AIR    ++ S+L+ R+L   H    A+P YL     P 
Sbjct: 130 LSIHLHLTDKLSDLVKESIDVAIRF-GALKDSNLVARRLADNHRVLVASPEYLAQHGHPQ 188

Query: 182 SIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS- 239
           S++EL  H  +    LI +  E    W       +    ++    ++   ++++  L S 
Sbjct: 189 SVEELADHACL----LISREGETQAEWQFNKANQLYSVAVNAAFSSNNGEVVKHWALASK 244

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA+   + VK    +  LV ++++       VY  +P    +  ++ A  +F+
Sbjct: 245 GIAMKSIWDVKAALADGTLVSVLDEFQQDDGAVYAVFPNRKFSPQRITALIDFL 298


>gi|46205559|ref|ZP_00048378.2| COG0583: Transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 219

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 1/192 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF +VA S SF  AAE+L LS++++S+ ++ LE  +G +LF+R +R L LTE G
Sbjct: 6   DFEAWAVFAMVADSLSFARAAEELSLSKATVSKAVARLEARLGARLFHRTSRRLALTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  +    +++  P G++R+A  +  G   +   L +FL  +  + 
Sbjct: 66  RAAREDAAALLAAGEAAEARALDANGTPRGRVRLAAPMSFGIAHVAPVLPDFLAAHRQVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     A P YL     P   
Sbjct: 126 VDLHLSDAVVDLVGGGFDLGLRI-AALPDSSLRVRRLCGVGRSLVATPAYLARHGRPQHP 184

Query: 184 QELDKHNLITFG 195
           ++L  H  + + 
Sbjct: 185 EDLKAHACLGYA 196


>gi|323491524|ref|ZP_08096703.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323314100|gb|EGA67185.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 299

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 28/297 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V AR  S++ AAE+L +SQ+++S++I  LE  +G KLF R  R + LTEQG  L 
Sbjct: 11  LRYFEVAARLNSYSRAAEELFISQAAVSQKIRQLEDGLGCKLFVRDGREMRLTEQGKILF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S+ +  + +   ++Q   V+  G L +++T       L   L +F   YP+I I++I
Sbjct: 71  KHVSQGFENIISGLNQIQSEPVE--GLLCVSSTPSFASRWLLPRLWKFSTQYPNIPIRII 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSS---LIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
                  +    AD AI   + +  S    L +  L    ++ + +P+  K+        
Sbjct: 129 TSCDAPKLKQGDADLAIWQGEDLDVSEQDKLHKEFLFEETIYPFCSPNLAKSI------- 181

Query: 185 ELDKHNLITFGDLIPKCMEDF--------NWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                NL T   L+   +  +         W A     + +  +  + V+++   M   +
Sbjct: 182 -----NLSTPEQLLSCWLIHYESGGYPWQTWFAQAGVEMNKESVRWMDVSTFDHAMNAVM 236

Query: 237 LGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G  L  D +  D      L++  E  +TP       Y +      ++ AF N++
Sbjct: 237 AGHGACLASDSLANDYVERGLLIKPFEIGMTPGIQFNLFYDDESPRRKRIAAFANWL 293


>gi|260459213|ref|ZP_05807468.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259034767|gb|EEW36023.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 308

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 121/286 (42%), Gaps = 12/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L V   VAR G F  AA +L +S S++S  +  +E  +G  LF R  R ++LTE G  L 
Sbjct: 9   LPVIVAVARRGGFALAAAELGMSPSAVSHAVRLVEERIGQPLFARTTRSVSLTEAGKALV 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATT---IDLGQNLLQGNLKEFLLLYPDIQI 124
              +     +      ++    +PSG LRI  +   I L    +   + E    YP++ +
Sbjct: 69  ETAAPALQDIAERMDRIRSVKGRPSGLLRINASNIAIPLAVTPVVAAMAE---RYPEVTV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D   +DI  +  D  IRL + I    +  R      +   A+P Y+     P S+ 
Sbjct: 126 EIFADQGLVDIVGEGFDAGIRLGEMIAQDMVAVRLTPPFSVVIVASPAYIGRHGRPGSVA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  HN I +   + +    + W L    + I       + V   L+ +   + G G+A 
Sbjct: 186 DLANHNCIGY--RLVRSGALYRWDLVEDGKDIAMETRGSVVVTDSLAAIDLALAGVGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + + + + +     LV+++         ++  +P       KL+AF
Sbjct: 244 MFEPLARADLAAGRLVQVLPQSAIEEPGLFLYFPRRAAMAPKLRAF 289


>gi|229044162|ref|ZP_04191844.1| Transcriptional regulator, LysR [Bacillus cereus AH676]
 gi|229109849|ref|ZP_04239433.1| Transcriptional regulator, LysR [Bacillus cereus Rock1-15]
 gi|228673601|gb|EEL28861.1| Transcriptional regulator, LysR [Bacillus cereus Rock1-15]
 gi|228725187|gb|EEL76462.1| Transcriptional regulator, LysR [Bacillus cereus AH676]
          Length = 300

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKVLLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    +  N+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKLNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP    D++   N   ++I     TP   +   Y
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPIIEIGLIY 274


>gi|190894353|ref|YP_001984646.1| putative LysR family transcriptional regulator [Rhizobium etli CIAT
           652]
 gi|190700014|gb|ACE94096.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 291

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 93/186 (50%), Gaps = 14/186 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V  R  +F  AAE+L ++Q ++++Q+ GLE ++G+ LF R  RGL LT QG+ 
Sbjct: 12  NALRAFEVSGRRLNFRTAAEELGITQGAVAQQVRGLEGQLGLMLFQRLPRGLALTAQGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                ++V    +T          +P   + I+ T  +   LL   L E     PDI ++
Sbjct: 72  ---YLADVTRAFDTLGEATGRLLARPE-TVTISVTPTVAAKLLIPRLAELYTALPDIDLR 127

Query: 126 LILDNKDIDISMDYADCAIRL-RKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +      D   D  D A+RL R+P    +Q+  L +++LV     A A+PH +K    P
Sbjct: 128 TVATEALADFDRDQVDIAVRLTRQPFPATLQAELLFRQELV-----AVASPHLVKGLTLP 182

Query: 181 LSIQEL 186
           L+ + L
Sbjct: 183 LANEAL 188


>gi|188583982|ref|YP_001927427.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347480|gb|ACB82892.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 292

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 3/170 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD+ R+   +   G+   AA  L ++ S+  R+++ +E E+G +LF RH  G   T
Sbjct: 1   MPVAWDEFRLVRAITERGALAPAAASLGINPSTAFRRLAVIEAELGTRLFERHRSGYVAT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  +    + +  ++     E+ + +  PSG LR+     L  +LL   L  F   YP
Sbjct: 61  PAGEAMAAAAARMEEEVARFDREVADRAQTPSGLLRVTAAAPLVTDLLMPMLGRFRTRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYA 169
            +QI+L++  + +++S   AD A+R  R P    +L+ RKL TI    Y 
Sbjct: 121 KVQIELVVSEEALNLSRRDADVALRATRDP--PPNLVGRKLATIAWAVYG 168


>gi|153010679|ref|YP_001371893.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562567|gb|ABS16064.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 293

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 12/191 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG-- 63
           + LRVF VV R  +F  AAE+L ++Q+++++QI GLE E+G+KLF R  R L +TE    
Sbjct: 8   NGLRVFEVVTRHLNFRLAAEELGVTQAAVAQQIRGLEAELGLKLFERQPRTLVMTEPARA 67

Query: 64  --SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             + + R    +    E  + E Q         L I+ T       L   L EF   +PD
Sbjct: 68  YIANVRRAFDLLSEATEMLRPEPQH--------LTISVTPTFASKWLIPRLAEFTHAHPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++++  +K  +   D  D A+R  +P     L    L    + A A+P  ++   +P 
Sbjct: 120 IELRIVASDKVANFQTDAVDLAVRYGEPPFGPGLNAELLFEHVIVAVASPVLVERLGDPG 179

Query: 182 SIQELDKHNLI 192
             + L+++ L+
Sbjct: 180 LPENLERYPLL 190


>gi|161520666|ref|YP_001584093.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353149|ref|YP_001948776.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221209918|ref|ZP_03582899.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160344716|gb|ABX17801.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337171|dbj|BAG46240.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221170606|gb|EEE03072.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 323

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 127/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    P++ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPEVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  +
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASRDYLARHGTPQTPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L  H  +          E   W   ++R  GE  +     +  QVN   ++      G G
Sbjct: 185 LPNHVCLRLDTPASPASE---W--RLERADGEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|170736233|ref|YP_001777493.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818421|gb|ACA93003.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 313

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 126/290 (43%), Gaps = 14/290 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+ G
Sbjct: 8   NLNRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    E     +   +    G LR++  ID G  ++   +      +P + 
Sbjct: 68  RVFYDACRDIVRATEAALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAVVALRDRHPALA 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ +++ +D+  D  D AIR+ + +  S+    +L T      A+P ++     P   
Sbjct: 128 VELVANDRVVDLVADNLDVAIRIGR-LADSNYRAVQLGTYEKWLVASPAFVARHGLPRDP 186

Query: 184 QELDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
             L     +    L  P  +E        D   G   + C+     N+  +     + G 
Sbjct: 187 DALAALPFVMLSSLPRPHTLE------LDDARGGRASVRCVAPVVSNTATACRAIVLAGG 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G  LL D+   D+     LVR++    T    ++  YP     + K++AF
Sbjct: 241 GFGLLTDFSTADDVAAGRLVRLLPGWRTAPAGIHAVYPSTRLPSPKVRAF 290


>gi|91786492|ref|YP_547444.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91695717|gb|ABE42546.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 297

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 122/285 (42%), Gaps = 26/285 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD   LR+F +VA  GS T AA++ HLS ++ S +I  LET+ G  L YR ARG+ LT
Sbjct: 1   MKFDLTDLRLFVLVADEGSLTRAAQRQHLSLAAASSRIKSLETQAGQPLLYREARGVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G         V  +++  +++LQE      G +R+        + L   L  FL   P
Sbjct: 61  PPGEAFLHHARGVLRQVDQLRVDLQEYGGGLRGHVRVFANTTAVTDFLPEILPGFLADNP 120

Query: 121 DIQIQL-----------ILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168
            + + L           +LD + DI I     D          +  L+   LVT   H +
Sbjct: 121 RVNVDLQEKPNAEIARGVLDGRADIGIVAGRVDTLGLQAIHFSTDRLV---LVTSRQHRF 177

Query: 169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
           A    +    E L    +  H+  T             +LATV   +G+P    +Q+ S+
Sbjct: 178 AGRKTIAFA-ETLDEDAVGMHHGSTLQ----------TFLATVTESLGKPLKLRIQLASF 226

Query: 229 LSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
            ++ +    G G+ ++P+   + N + + +    +T  ++V   Y
Sbjct: 227 DAMCRMIGSGVGVGIVPESAARRNRDTMNLALIELTDEWSVRERY 271


>gi|259909731|ref|YP_002650087.1| AmpR transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|224965353|emb|CAX56885.1| AmpR transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|283479817|emb|CAY75733.1| HTH-type transcriptional activator ampR [Erwinia pyrifoliae DSM
           12163]
          Length = 301

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 29/293 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT A+ +L+++ ++IS+Q+  LE  +  +LF R +RGL LT +G  
Sbjct: 11  NSLRAFEAAARLLSFTKASRELNVTHAAISQQVKALEQHLKCQLFIRISRGLMLTAEGES 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  + +E + ++ +T     +  ++   K+ +  T  +G   L   L +F  L+P I + 
Sbjct: 71  LLPILNESFDRIASTLDRFSDGQMREKMKIGVVGTFAVG--WLLARLADFRRLHPHIDLL 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS--- 182
           L   N  +D   +  D AIR        +               A H+L  C  PLS   
Sbjct: 129 LSTHNNHVDSLAEGLDYAIRYGNGAWQGT---------------ASHFL--CDAPLSPLC 171

Query: 183 -----IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                 Q     +L +F  L     ++++ W +     I  P    +  +S L++++   
Sbjct: 172 CPALGAQLRAPGDLHSFTLLRSYRRDEWSTWFSAAGERIPSPSQHIMMFDSSLTMLEAAQ 231

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G+GIAL P  +     N  RI++   + S ++   +   L++  +  A R+F
Sbjct: 232 AGAGIALAPPTMFSHLLNSGRIVQP-FSQSVSLGGYWLTRLQSRTETAAMRDF 283


>gi|221196291|ref|ZP_03569338.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221202964|ref|ZP_03575983.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176898|gb|EEE09326.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221182845|gb|EEE15245.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 323

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 127/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    P++ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPEVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  +
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASRDYLARHGTPQTPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L  H  +          E   W   ++R  GE  +     +  QVN   ++      G G
Sbjct: 185 LPNHVCLRLDTPASPASE---W--RLERADGEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|171321617|ref|ZP_02910545.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171093101|gb|EDT38321.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 322

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 125/287 (43%), Gaps = 9/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  +
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASRDYLARHGTPKTPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H  +          E   W    D     + E + +  QVN   ++      G GIA
Sbjct: 185 LPNHVCLRLDTPASPASE---WRLERDEDEETVYELQPAPFQVNVPDALCVAVRAGRGIA 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +  Y V D+     L+R++ +    + +VY  Y        K++ F
Sbjct: 242 CVALYTVLDDLREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|317404615|gb|EFV85016.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 250

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 110/249 (44%), Gaps = 26/249 (10%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK---- 65
           VF  VA   SF  AA  L  S S+++R +  LE +VG +L  R    + LT QG      
Sbjct: 17  VFCAVAERQSFVLAARALGASPSAVTRAVQALERQVGAQLLLRSKNSVVLTPQGESYFQS 76

Query: 66  ---LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              L R+ SE    L  TQ   Q       G+LR +    LG  LL   L+ +   YP +
Sbjct: 77  ARGLLRLESEAREALRDTQSGDQ-------GRLRFSAPDLLGVTLLPAVLRRYAADYPGV 129

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +   +K +D   +  D AIR   P  SS L+  +L        A+P Y+     P  
Sbjct: 130 TVDINYTDKWVDPIAEGLDFAIRGGFPA-SSELLGARLWPYARLLCASPDYVACMGLPRE 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI----GEPRISCLQVNSYLSIMQYCVLG 238
            +EL +H LI      P+ ++D  W    D+ I     EP    ++V++   +M   + G
Sbjct: 189 PEELARHRLIMHTG--PRVLKD--WHLRRDKRIVRMHAEP---AVRVSTGSGLMALALQG 241

Query: 239 SGIALLPDY 247
            GIA L D+
Sbjct: 242 VGIARLADW 250


>gi|304407274|ref|ZP_07388927.1| transcriptional regulator, LysR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304343715|gb|EFM09556.1| transcriptional regulator, LysR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 300

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 73/125 (58%), Gaps = 2/125 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W   R FY  AR+GS + AAE+L+++Q +++  I  LE ++  +LF+R ++G+ LTE
Sbjct: 7   NMEW--YRAFYWAARTGSLSKAAEELYITQPAVTHAIKQLEGQLACRLFFRTSKGVKLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L R   + +H +++ +  L + +    G +RI  +  L +  L   L+EF   YP 
Sbjct: 65  EGDVLMRHVEQAFHLIQSGERSLADRNALLEGNMRIGASDTLCKYYLLPRLREFHERYPG 124

Query: 122 IQIQL 126
           IQ Q+
Sbjct: 125 IQFQV 129


>gi|323493768|ref|ZP_08098887.1| transcriptional regulator, LysR family protein [Vibrio brasiliensis
           LMG 20546]
 gi|323312002|gb|EGA65147.1| transcriptional regulator, LysR family protein [Vibrio brasiliensis
           LMG 20546]
          Length = 317

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 4/173 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + +  + L+VF  VAR  SFT AA++L+++QS++SRQI  LE E+ + L  R  R + LT
Sbjct: 7   LPYSHNALKVFEAVARWMSFTRAADELNVTQSAVSRQIKQLEQELSVSLLIRKHRSIELT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L++V S  +H+L++   + +  + K   ++ I + +     +L  N+      YP
Sbjct: 67  EQGRDLYQVLSNNFHQLDSLIAQWKAPAKK---RIVIKSALSYATRVLMPNVAMLNEKYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
           + +I +I+ + + D  ++  DC + +    Q    + +  VT     Y AP Y
Sbjct: 124 EHEI-VIIPSIEEDPQLEAEDCDLLIINTRQKDRYLGKPGVTFLRAEYMAPVY 175


>gi|317053911|ref|YP_004117936.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316951906|gb|ADU71380.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 293

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 122/292 (41%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF VV R  +F  AAE+L ++Q ++++QI GLE  +G+KLF RH R L LT  G  
Sbjct: 12  NALRVFEVVTRHLNFRLAAEELEVTQGAVAQQIRGLEASLGLKLFERHPRSLALTGAGRG 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   + +  ++     L+         L ++ T       +   L  F   +PDI ++
Sbjct: 72  YAQSIRQAFELIDEATRTLRPE----PHHLTLSVTPTFASRWMLPRLPAFTAAWPDIDLR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   + +    +  D A+R  +P   + +    L      A  +P  L    +P   + 
Sbjct: 128 VLAAERLVQFHQEGVDLAVRYGRPPFGTGVEATLLFRYSAMAVVSPELLAQLGDPTQPEN 187

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             ++ L+  G  L P  +       T++          L+ N     ++  + G GIAL 
Sbjct: 188 CLRYVLLHDGHHLWPAFLAQQFPTMTLN------HQHHLRFNQTALALEAAISGQGIALT 241

Query: 245 -PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P +I  D  N  LV+     +      Y   P   +    + A R+++  +
Sbjct: 242 SPHFIANDLANGRLVQDFAQTLEVDAGWYLVAPSRPRQHAPISAVRDWLLAQ 293


>gi|229065820|ref|ZP_04201024.1| Transcriptional regulator, LysR [Bacillus cereus AH603]
 gi|228715436|gb|EEL67260.1| Transcriptional regulator, LysR [Bacillus cereus AH603]
          Length = 305

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 138/293 (47%), Gaps = 40/293 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   ISIELRQLEYFLAVSKELHFTRAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   + +F   YP
Sbjct: 67  EAGKVLLSHSKTIFHEVEQARSTIQDLNGLHHGSLTIGSLLTVVNYLLPPAILDFNKQYP 126

Query: 121 DIQIQLI----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I++ ++          L   ++DI + +         P+Q   ++   L    +     
Sbjct: 127 NIELSVLGLRTGEIREKLLQNELDIGITFL--------PVQDKEIVSIPLYKSELTLVVP 178

Query: 171 PHYLKNCREPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQ 224
             +    R+ +SI+EL  +  I         +LI    ++FN+     +PI       L+
Sbjct: 179 TSHSLTERKYVSIEELQDYPSILLPKNFHLTELITSHCQNFNFKP---KPI-------LE 228

Query: 225 VNSYLSIMQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +++  S++Q    G GI +LP    D++  ++   ++I     TP+  +   Y
Sbjct: 229 ISTMESLIQMVAQGMGITVLPKPYIDFLQNEHIQAIKIENP--TPTIDIGLIY 279


>gi|184159642|ref|YP_001847981.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332876127|ref|ZP_08443911.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183211236|gb|ACC58634.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322509552|gb|ADX05006.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323519572|gb|ADX93953.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735745|gb|EGJ66788.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 288

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 117/266 (43%), Gaps = 28/266 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L++F  V   G+   A+ QLH   S+I+ +I  LE E+G  LFYR  + L LT  
Sbjct: 1   MDIAQLKMFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGAPLFYREGKALKLTPS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQES---SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G     +  +  HK+     E + S      PSG L+I          L   L ++   Y
Sbjct: 61  G----EIFLDYCHKILALCDEAKRSIHPDAPPSGPLKIGAIESSATTRLPNLLAKYHQRY 116

Query: 120 PDIQIQLILDNKD---IDISMDYADCAI---RLRKPIQSS-SLIQRKLVTIHMHAYAAPH 172
           P++ IQ+I        +DIS    D AI    +  P+ +  S+ Q  +V I  H+    H
Sbjct: 117 PEVSIQIITGTWKQLLVDISQHKLDGAIVAGNIEFPMLNKLSIYQEDMVLIASHSLGEIH 176

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
               C+E L  +E+    + T G      +E++  L  +  PI         + SY +I+
Sbjct: 177 ----CQEDLIGKEI---FMWTEGCPYRAALEEWLKLKNISLPI-------TSITSYATII 222

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRI 258
                GSG+AL+P  I +   NL  I
Sbjct: 223 GCVSAGSGVALVPKSIYEQYKNLAHI 248


>gi|163758343|ref|ZP_02165431.1| regulatory protein, LysR:LysR, substrate-binding [Hoeflea
           phototrophica DFL-43]
 gi|162284632|gb|EDQ34915.1| regulatory protein, LysR:LysR, substrate-binding [Hoeflea
           phototrophica DFL-43]
          Length = 311

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 16/291 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   G F+ AA  L + +S +SR++  LE  +G++L  R +R +T TE G + +R  
Sbjct: 14  FVQVVEKGGFSAAARALDIPKSRLSRRVRQLEDHLGVRLLQRTSRIVTTTEIGEEYYRHA 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            +   + E  +  ++  +    G + ++ ++ + Q  L   L  FL   P + +     N
Sbjct: 74  RDALARFEIAETAVRCKTNTIEGTVTVSCSVGMAQFGLAQILPRFLQDNPGVTVVQRASN 133

Query: 131 KDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  D+     D AIR     +  SSLIQ +L  +  H + +P YL +        EL  H
Sbjct: 134 QMEDLIKGGIDVAIRGHMDTLPDSSLIQTRLARVEWHLFGSPDYLTSLGSVKDPPELANH 193

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGS-GIALLPD 246
             +  G    +  E   WL T D       + C     +  +S ++     S G+  LP 
Sbjct: 194 PAMVLG----RPRETHQWLLT-DEGGQTASVPCAVRFASDDMSTLKNAASASLGLVALPS 248

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLK 293
           Y+ +   +   LVR++ D    +  +    P      G L     F+ FLK
Sbjct: 249 YVCRPEVEAGTLVRVLPDWTAGTPQISLLMP---SKRGMLPVVETFLDFLK 296


>gi|126737933|ref|ZP_01753663.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126721326|gb|EBA18030.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 293

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 115/246 (46%), Gaps = 16/246 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VAR  +FT AAE+L++SQ+++S++I  LET +G++L  RH R + LT+ G K
Sbjct: 14  DYLLFFETVARHKNFTRAAEELNVSQAAVSKRIKFLETWLGVELISRHGRAVDLTKAGHK 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    SE    L     +L++ S +   KL +A+ I + Q  L   + E+LL    + + 
Sbjct: 74  LAANASEALEYLALGIGQLRQGSHE---KLSLASNIAVSQFWLTPQVNEYLLSQDAVPVS 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   N + DI     D  +     I      +     I     AAP  L     P     
Sbjct: 131 VTASNNEADILNQDHDAIVYYGSDIPLGWDGEVLFEEI-WQPLAAPGLL--AENP----N 183

Query: 186 LDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L++  L+ F  L  K +   DF  L    +  G PR++   + SY S +   + G GIAL
Sbjct: 184 LEQVPLLDFDKLALKWINWPDFMELTGAAKLAGGPRVN---LGSYGSSLDAAIRGKGIAL 240

Query: 244 -LPDYI 248
             PD +
Sbjct: 241 GCPDVL 246


>gi|127513935|ref|YP_001095132.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126639230|gb|ABO24873.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 297

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 96/200 (48%), Gaps = 11/200 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  +  +G F+  A++L +  +++SR+++ LE+ +  +L  R  R L LTE+GS+L 
Sbjct: 12  IHLFVHLVNTGGFSQVAKELGMPVATVSRKVTKLESLLDTQLIMRSTRKLRLTEEGSELF 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  + +       E   K  G LRIA  + +   +  G L +F   YPDIQ+ + 
Sbjct: 72  GRYQNVVAQFDRCSEPRVE---KAEGTLRIAAPVSIISMIFIGVLNDFSKAYPDIQLHIT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +N  ID+  +  D AI +      SS + + L  +    +A+P YL     P    +L 
Sbjct: 129 QNNSSIDLIDEGVDVAI-VGGAQPDSSWVSKSLGVLDYGLFASPGYLACAGTPQHPDQLV 187

Query: 188 KHNLITFGDLIPKCMEDFNW 207
           +H+LI       K    FNW
Sbjct: 188 EHSLI-------KVWPLFNW 200


>gi|172063447|ref|YP_001811098.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995964|gb|ACB66882.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 322

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 124/284 (43%), Gaps = 3/284 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  +
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASRDYLARHGTPKTPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +          E        +  + E + +  QVN   ++      G GIA + 
Sbjct: 185 LPNHVCLRLDTPASPASEWRLERGDDEETVYELQPAPFQVNVPDALCVAVRAGRGIACVA 244

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            Y V D+     L+R++ +    + +VY  Y        K++ F
Sbjct: 245 LYTVLDDLREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|312883667|ref|ZP_07743391.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368640|gb|EFP96168.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 300

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 113/246 (45%), Gaps = 10/246 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F+V A+  SFT AA +L ++Q+++S+Q+ GLE  +G+ LF R  RG++LT +GS 
Sbjct: 20  NSLRAFFVSAKHQSFTKAANELCVTQTAVSQQVKGLEKRLGVTLFNRMPRGISLTREGSL 79

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  +  + + +L      L   + +    L +  T  +  N L   L+ F   YP+I ++
Sbjct: 80  LFPIVEKAFSELTIGLDNLCLGTSREILNLGVVGTFAV--NWLLPRLESFYRSYPNIDLR 137

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +N   D   +  D  IR  +     + +   L          P       +P   Q+
Sbjct: 138 ISTNNNVADAFSEGLDYIIRFGRG-NWHACVSELLFATPFTVLCPPFLANQLNQP---QD 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + ++ L+   D+     E   WL           ++C+  +S   +++  + G G+AL P
Sbjct: 194 IFRYTLLRSYDV----YEWDQWLRQAGLSSQSHSVNCITFDSTALMIEATIQGFGLALAP 249

Query: 246 DYIVKD 251
             + ++
Sbjct: 250 PAMFQE 255


>gi|229184642|ref|ZP_04311843.1| Transcriptional regulator, LysR [Bacillus cereus BGSC 6E1]
 gi|228598855|gb|EEK56474.1| Transcriptional regulator, LysR [Bacillus cereus BGSC 6E1]
 gi|324326445|gb|ADY21705.1| transcriptional regulator, LysR family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 300

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISTPLYKSELIIVVPTGHQLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
              +SI EL  + LI         +LI    + FN+     +PI       L++++  S+
Sbjct: 181 HNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|327380968|gb|AEA52444.1| Transcriptional regulator, LysR family [Lactobacillus casei LC2W]
 gi|327384144|gb|AEA55618.1| Transcriptional regulator, LysR family [Lactobacillus casei BD-II]
          Length = 298

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 113/251 (45%), Gaps = 19/251 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++ +  ++  F  VA +G  T AA+QLH++Q  +S Q+  LE E+G++LF R +RG+ LT
Sbjct: 5   IAMNLKQITYFLAVAEAGQMTAAAKQLHMAQPPLSYQLKALEDELGVRLFERGSRGVRLT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +      ++   +   +   + S     G L +  T   G  L +  L+ F   YP
Sbjct: 65  GSGQQFMTYAQQIVETVAAAENAARRSGEGEIGTLALGLTSSAGDVLPRQKLQAFNRRYP 124

Query: 121 DIQIQLILDNK--DID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            ++  L  DN    +D +  +  D AI +R P     L   +L + HM A AA    +  
Sbjct: 125 QVEFALYEDNTYGILDKLRRNILDLAI-VRTPFNDDGLASCRLSSDHMIAVAAAS--QPL 181

Query: 178 REPLSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
              L+I +L +  LI    F  L      ++            P I+ L  +   + + +
Sbjct: 182 PATLTIPDLKQQPLIVYRRFSSLFKTTFAEYGI---------TPTIAVL-CDDARTALHW 231

Query: 235 CVLGSGIALLP 245
             +G G+AL+P
Sbjct: 232 AQMGMGVALVP 242


>gi|327191960|gb|EGE58941.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 302

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 130/311 (41%), Gaps = 41/311 (13%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   V+   SF  AA +L ++ S+IS  IS LE  +G++L  R  R +  TE+G  L
Sbjct: 8   QLAVLAAVSEHRSFRAAARELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGRLL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    +++     ++++  KP+G LR+         LL   L +FL LYPDI +++
Sbjct: 68  LERLRPALEEIDIALEAVRDTRAKPAGNLRVTAPRFASDILLAPRLGDFLNLYPDITLEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++   DI  +  D  +RL + +++  +  R    +     A+P Y +   +P   ++L
Sbjct: 128 ANEDGFTDIVKEGFDAGLRLEESLEADMIAVRFSPNLTTVIAASPDYFERHPKPEHPRDL 187

Query: 187 DKHNLI----TFGDLIPKCMEDFNW---------LATVDRP--IGEPR-----ISCLQVN 226
             H  I    T G +       + W         +  VD P  + E R            
Sbjct: 188 VHHRCIKRRFTNGSI-------YRWEFEKDGQELVVAVDGPLIVSEDRLALLAALNGAGL 240

Query: 227 SYL-SIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +YL  +  +  L +G              LVR++ED   P    +  YP   +    L+A
Sbjct: 241 AYLFDLRVHAELAAG-------------KLVRVLEDWCAPYPGPFLYYPTRRQMRPALRA 287

Query: 286 FRNFIFLKARD 296
           F +F     RD
Sbjct: 288 FIDFFRYVERD 298


>gi|296532940|ref|ZP_06895599.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296266736|gb|EFH12702.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 324

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 130/291 (44%), Gaps = 23/291 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD+LR    + R GS + AA  L +  S+I+R++   E E G  LF R   G   T  G
Sbjct: 28  DWDRLRTLLALRRGGSLSAAARALGVDHSTIARRLEAAEQEFGTPLFERGPEGFAPTALG 87

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +      +  ++      +  ++   +G +R+ TT  L   LL   L  FL  +P ++
Sbjct: 88  EAVLEAAERMEAEVTGLLRRIDGAATGLTGPVRVTTTPHLAACLLAPALGPFLAAHPGLR 147

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP--L 181
           ++L+ D++ +D+S   AD A+RL +P     L+ ++L       YAA    ++  E   +
Sbjct: 148 MELVADSRSLDLSRREADLALRLARP-DLPGLVAKRLGEAGFAFYAARDDHRSFAEQSFI 206

Query: 182 SIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + Q+   H+ +      L+P                 E RI  L+ N+  ++      G 
Sbjct: 207 AYQDASGHSPLQRHMASLVP-----------------EERI-VLRSNAMQALHNAVRSGL 248

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G ALL  +  + +  L R+      P+  ++  Y E L+ + +L+A   F+
Sbjct: 249 GAALLSCFSAEADTALRRLPAPRAIPAVGLWLVYHEDLRRSPRLRAALGFV 299


>gi|187924106|ref|YP_001895748.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715300|gb|ACD16524.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 319

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 4/192 (2%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  +   GSFT A+++L +S  ++SR ++ LE  +G +L  R  R +  TE 
Sbjct: 2   DRLREMEVFVAIVDGGSFTSASDKLGMSAPAVSRALTSLEARLGAQLLARTTRSVRPTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        +V   +   + ++      P G L I+  +  GQ  +   +  +   YPD+
Sbjct: 62  GMSYLDACRKVLDAVTDAEADVAACQDNPVGTLTISAPVLFGQRFIAPLIDAYAQRYPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +  ++   +  +  D AIR+   +  SS+    L  +    Y AP YL    EP+ 
Sbjct: 122 SINAVYVDRTTRLLEEGVDVAIRIGH-LGDSSIYAIPLGFVRRRTYVAPAYLAAHGEPVH 180

Query: 183 IQELDKHNLITF 194
            +EL  H+ ++ 
Sbjct: 181 PRELADHHCVSL 192


>gi|186471292|ref|YP_001862610.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197601|gb|ACC75564.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 308

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 21/301 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF      GS   A+ +L  S +++SR I+ LE  VG  L +R  R + L+E G +
Sbjct: 5   DAMKVFVATLDEGSLAGASRRLGRSPAAVSRAIAFLEAHVGSPLLHRTTRTIKLSEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   LE   + +      P G L +   +  GQ+LL+  L +F+  YP + ++
Sbjct: 65  YAAACRRILTDLEEADLLVAGERSAPRGLLNVTAPVAAGQDLLRSLLDDFIDAYPAVSVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-KNCR--EPLS 182
           L + ++ + +  +  D A+R+   +  S+L+   +  +     AAP YL K+ R  EP  
Sbjct: 125 LHMLDRPVSLIDEGIDVALRIAH-LPDSTLVAIPVGEVRRVVTAAPRYLAKHPRIHEPGD 183

Query: 183 IQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           + E    ++  FG       P        + T       PR   L VNS  + +   V G
Sbjct: 184 LAEHQIISMTHFGLDSWSFPPAEGSTVPQVVTF-----SPR---LIVNSIDAAVASAVEG 235

Query: 239 SGIALLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+  +  Y     VKD  +L  ++ D       V+   P    +  K++AF +F   + 
Sbjct: 236 RGVTRVFSYHVAQQVKDG-HLRIVLRDSEHAPLPVHLLTPHGRLSVPKVRAFVDFATPRL 294

Query: 295 R 295
           R
Sbjct: 295 R 295


>gi|228915028|ref|ZP_04078629.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844612|gb|EEM89662.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 300

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 137/293 (46%), Gaps = 40/293 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I++ ++          L   ++DI + +        K I S+ L + +L+ +       
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFLPVQ---DKEIISTPLYESELIIV----VPT 174

Query: 171 PHYLKNCREPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQ 224
            H L      +SI EL  + LI         +LI    + FN+     +PI       L+
Sbjct: 175 GHQLAEHNH-VSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LE 223

Query: 225 VNSYLSIMQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +++  S++Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 224 ISTMESLIQMVSKGMGITVLPKPYIDFLQSKNIQAIKIENP--TPTIEIGLIY 274


>gi|218675907|ref|YP_002394726.1| Hypothetical transcriptional regulator, LysR family [Vibrio
           splendidus LGP32]
 gi|218324175|emb|CAV25395.1| Hypothetical transcriptional regulator, LysR family [Vibrio
           splendidus LGP32]
          Length = 312

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AA   +LS + IS+ I  LE+ +  +L +R  R  +LT+ G   +
Sbjct: 7   MKVFVYVVEQGSFRSAANHFNLSATMISKHIHHLESSLNSQLIHRTTRKQSLTDSGQLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   +   +  +Q    +P G ++I   +  G  +L   + +FL  +P I ++L+
Sbjct: 67  RECKRILEDISNAENLIQTLENQPQGTVKINCPVTYGNKVLAPIVAKFLAHHPTINVELV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N  +D      D  +R+   +  SSL+ R L    M   AAP YL    E   +++L 
Sbjct: 127 LNNDLVDPYSSDIDLIVRIGD-LSDSSLVARYLGDYEMCYCAAPEYLNQHAEIRVLEDLA 185

Query: 188 KHNLITF 194
           +H  + F
Sbjct: 186 QHPSLGF 192


>gi|209809642|ref|YP_002265181.1| HTH-type transcriptional activator, LysR-family [Aliivibrio
           salmonicida LFI1238]
 gi|208011205|emb|CAQ81636.1| HTH-type transcriptional activator, LysR-family [Aliivibrio
           salmonicida LFI1238]
          Length = 290

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 5/196 (2%)

Query: 4   DW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DW + +R +  V   GSF  AA QL+ S S+IS++I+ LE  VG++L  R  R +  TE 
Sbjct: 2   DWIESVRSYIKVVEEGSFNAAAFQLNTSGSAISKRINWLEDRVGVQLLTRTTRSVHQTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++       + +    E +  +  P+G LRI  T+ +G   +   L +FL  YP I
Sbjct: 62  GILFYQRARLQLDQWQHLVDETKAINQTPTGLLRIGATLTVGSKFIIKYLDDFLTTYPKI 121

Query: 123 QIQLI--LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++QLI  L  +  D ++D      R  + + + S     L   H   +A+  Y++    P
Sbjct: 122 KVQLITTLPGQIPDTNVDV--FISRELEQLNTFSYKHTPLFQHHSEFFASKAYIEKNGTP 179

Query: 181 LSIQELDKHNLITFGD 196
            ++ +L+ HN++ +G+
Sbjct: 180 ENLDDLNNHNILIWGE 195


>gi|159186525|ref|NP_396116.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141585|gb|AAK90557.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 308

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 133/293 (45%), Gaps = 12/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D+L +F  +A+  S + AA  L L+ +  S ++  LE ++  +L +R  R  TLTE 
Sbjct: 1   MDVDELNLFVRIAQLRSISAAARDLGLTPAGASAKLLVLERKLSARLVHRTTRQATLTED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    E  +  L      P G LRIA      +  +   L +F   YPD+
Sbjct: 61  GLAFLPHAEHIVVAAEAARAALGREQAAPRGTLRIAAPASFARMHIVPGLADFCRQYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L + +  +D+     D A+R  + +  SS + R+L   +    A+P YL+    P +
Sbjct: 121 ALDLRISDSIVDLVEGAFDVAVRYTE-LSDSSFVARRLAPDNRVLVASPEYLEKHGRPST 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI 241
             +L +H  +  G L    +  F    +V   + E R++  L++N   ++      G GI
Sbjct: 180 PDDLAEHTCLVVGAL---DLWTFRGKGSV---VIERRVTPSLRINDGTAVRDAASAGLGI 233

Query: 242 ALLPDYIVKD---NPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL+  +   +   +  LV ++ E  +  + T++  YP + +   K++ F +++
Sbjct: 234 ALMATWCASEELQSGALVPVLPEYPLISTQTLWALYPSSRELAPKVRVFIDWL 286


>gi|260430365|ref|ZP_05784338.1| HTH-type transcriptional activator AmpR [Citreicella sp. SE45]
 gi|260418394|gb|EEX11651.1| HTH-type transcriptional activator AmpR [Citreicella sp. SE45]
          Length = 316

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 133/307 (43%), Gaps = 23/307 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR+ SFT AA +L+++Q +ISR +  LE E+G+ LF R  R + LT +G  
Sbjct: 9   NALRAFEASARTLSFTAAAAELNVTQGAISRHVRALEAEIGVALFVRSVRRIDLTHEGHV 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R       +LE +   +   +    G L I+       N L   L++F    P I++ 
Sbjct: 69  LFRGVRSALDQLEQSVGRVDRRTA--GGVLTISALPTFAMNWLMPRLEDFSQTNPAIEVH 126

Query: 126 LILDNKDIDISMDYADCAIRLR------KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           L+     +D S +  D AIR+        P  S+ +  +  +T     + A   + +   
Sbjct: 127 LLTGIGAVDFSREDTDLAIRVGTLGDGDAPANSARIDLK--MTERQEGWRAHRLMADELV 184

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDF--------NWLATVDRPIGEPRISCLQVNSYLSI 231
           P+    + +  + +  DL+ + +           ++L     P  E      +   Y  +
Sbjct: 185 PVGTARVMR-GVNSPADLLTRRLLHMATRANAWADYLGATGIP-HEVANEGPRFGHYFMV 242

Query: 232 MQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           ++    G GIA++P  +V+D+     LV +  D +  +   Y    E       +KAFR 
Sbjct: 243 IEAARRGDGIAVVPKVLVEDDLASGRLVTLQGDPVPSAGAYYLLCREHQWQLPVIKAFRT 302

Query: 289 FIFLKAR 295
           +I  +A+
Sbjct: 303 WISGQAK 309


>gi|326403340|ref|YP_004283421.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325050201|dbj|BAJ80539.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 298

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 122/291 (41%), Gaps = 17/291 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+++  VAR GSF+ A  +  +SQ  +SR I+ LE E+G +L  R  R +  TE G
Sbjct: 3   DIAALKLYTRVARLGSFSAAGRESGMSQPQVSRMIAELEQELGARLLSRTTRAVVPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +   L+     ++E   +  G LR++     G ++    L +F   +  +Q
Sbjct: 63  KAFLLRIEAILAALDEAGQSVREGG-EFHGMLRLSMPTSFGIHVAIPRLADFAARHSRLQ 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L LD++  D+  +  D AIR+     S+S   R++  +     A+P YL     P   
Sbjct: 122 IHLELDDRRQDLVREAVDVAIRIGTLPDSASATARQIALVSRVIVASPAYLAANGAPARP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLG 238
           ++L  H +I              W  T +R  GE RI+         N     +   + G
Sbjct: 182 EDLAGHRIIGGA----AATNPLAW--TFERD-GE-RIAARVQPQFTTNENEGAIVAAIAG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GI    ++  +   D+ +LVR++ D       V+  +P         +A 
Sbjct: 234 LGITSTGEWDCRRALDDGSLVRLLTDWTMADVPVHAYFPMGRNTRAAARAL 284


>gi|114769214|ref|ZP_01446840.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114550131|gb|EAU53012.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
          Length = 290

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 121/288 (42%), Gaps = 18/288 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W +LR  Y VA+ G+ + AA  L   +++++R I  LE E+G ++F RHARG TLTE G 
Sbjct: 4   WAELRTAYQVAKLGTVSAAATALGFHRATVNRHIDVLEEEMGARIFIRHARGYTLTELGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            + RV  +    +E     ++       G+L++       + L+   +  F    P+  +
Sbjct: 64  DVLRVAQKTEELIEDLAGRVEGGKDTLEGELKLTILAGFAE-LIMKPILNFRAENPNCIV 122

Query: 125 QLILDNKDIDISMDYADCAIRLR---KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
              LD  +    ++Y +  I LR   KP     ++  K   I+ + YA   Y++    P 
Sbjct: 123 H--LDAGENLARLEYGEAHIALRAGPKPDHPDYVVS-KFAQINFNLYAHQSYIQRFGMPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              + D H  +    L PK   + +   W+  + R    P +  L         +  + G
Sbjct: 180 DTDDFDNHQFV----LPPKFGGNLSVREWIQNIIR----PDMIALSTQHVNVNFKAVLAG 231

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GI  + DY  K      R++      S  ++      L  T K++A 
Sbjct: 232 IGIGFIEDYKAKMFGGFHRVLAPNQEWSVPIWLVTHVDLHRTAKVQAM 279


>gi|89054015|ref|YP_509466.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88863564|gb|ABD54441.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 302

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 129/301 (42%), Gaps = 10/301 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D +     V   GSF   A  L ++ S+IS+ +  LE  +G+ L  R  R + LT+ G
Sbjct: 5   DLDGILPLLAVVEHGSFRAGAAALGVTPSAISQSVKQLEERIGVPLLTRTTRSVGLTQAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  S    ++      + E   +PSG LRI+         L   L EF+  YP+I+
Sbjct: 65  QLFVDRASPAICEVRDALASISEFGQRPSGLLRISAPRLAYPVALAPVLPEFMKTYPEIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ L++   DI     D  IRL   +++  + +       M   A+P YL     P + 
Sbjct: 125 VEISLEDTLTDIVQSRFDAGIRLGATVEADMVARALTPPSRMCVVASPDYLDAHGVPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I F     K +  + +L    DR I  P +  + VN   + +   + G G+A
Sbjct: 185 DDLLSHRCINFRRPTRKTVYHWRFLERGEDRHIPVPGV--MIVNDTAAKIDAALNGFGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                +V+ +     L+ ++E  +   P F +Y  YP   +   KL+ F +F   + R  
Sbjct: 243 YELAPVVEQHVKAGRLISVLEGYLPEVPGFHIY--YPGRKQIMLKLRVFIDFAAAELRSS 300

Query: 298 K 298
           +
Sbjct: 301 R 301


>gi|218232168|ref|YP_002367112.1| transcriptional regulator, LysR family [Bacillus cereus B4264]
 gi|218160125|gb|ACK60117.1| transcriptional regulator, LysR family [Bacillus cereus B4264]
          Length = 300

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    +  N+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKLNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP    D++   N   ++I     TP   +   Y
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPIIEIGLIY 274


>gi|152971095|ref|YP_001336204.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895682|ref|YP_002920417.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|330013412|ref|ZP_08307635.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150955944|gb|ABR77974.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238547999|dbj|BAH64350.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328533527|gb|EGF60252.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 299

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 114/242 (47%), Gaps = 6/242 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + L +F   A  GSF+ AA +     + +S  I  LET + I+LF R  R L LT +
Sbjct: 2   FRLEDLTLFVRAAALGSFSDAAREAGQQPAQVSAAIKRLETILNIRLFARSTRSLRLTPE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       +++   LE    ++Q    +  G L+IA   DLG+NLL    ++F   +P +
Sbjct: 62  GETWLPYATQMLDTLEAGLQKIQTPDDEVRGMLQIAVPSDLGRNLLLTLFRDFRQRHPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPL 181
           +++L+  ++  D+  D  D A R       +S I   +   +     A+P ++    EP 
Sbjct: 122 RLRLLFSDQLTDVFKDPVDVAFRYGNN-DDASFISLPVAPENRRVLVASPEWIARHGEPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           +++EL +HN + +   I +      W  ++D  + + ++S  +  +    I +  + G G
Sbjct: 181 TLEELSQHNALIY---ILRGRPFDRWSLSLDGVVQQQKVSGTVMSDDAEVIRRLAIAGEG 237

Query: 241 IA 242
           IA
Sbjct: 238 IA 239


>gi|330806949|ref|YP_004351411.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375057|gb|AEA66407.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 296

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 141/296 (47%), Gaps = 14/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +    SFT AAE L++ +++++  ++  E  +G++L  R  R +  T  G   +
Sbjct: 7   MKVFVRIYERSSFTLAAEDLNMPRATLTHTLNQFEAWLGVRLLERSTRKVRPTLDGEAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  ++  +   V P GKLR+       +  +   L +F+  YP+I++ + 
Sbjct: 67  PRCVQLLAELEEAELAFR--GVAPKGKLRVDLHGTQARYFVIPALPQFMARYPEIELFIS 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R  + +  SSLI R++  +     A+P YL+   EP  + +L 
Sbjct: 125 EADRFVDLIAEGVDCVLRSGE-LADSSLIGRRVANLRQITCASPGYLRQYGEPKCLDDLK 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +       +  F ++  VD  + E P    L V+         + G G+   P 
Sbjct: 184 HHKAVNYVSRTTAKLYPFEFM--VDGELKEVPIGGSLSVSGAEIYAASAIAGLGLIQCPH 241

Query: 247 YIVKDNPNLVRIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNF---IFLKAR 295
           Y +++ P    +M++V+T    PS  V   YP     + +++ F ++   +F +AR
Sbjct: 242 YRMEE-PIRQGLMQEVLTATPPPSMPVSVLYPHNRLMSPRVRVFVDWVAEVFAQAR 296


>gi|325293930|ref|YP_004279794.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325061783|gb|ADY65474.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 303

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 127/301 (42%), Gaps = 34/301 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   +R+GS T AA +L L+Q ++SRQI  LE ++G+ LF R  + + LT  G    
Sbjct: 15  LAAFEAASRTGSVTAAARELGLTQGAVSRQILALEEQLGVALFLRERQTIRLTRAGEGYA 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E   ++ T  + L+ +     G L +      G   L   L +F+  +P + + L+
Sbjct: 75  REIREALRRISTASLNLRAN--PDGGTLNLGVLPSFGTRWLVPRLPDFIARHPGVSVNLL 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D   D  D AI    P    +    +LV + MH    P      RE        
Sbjct: 133 TRSSLFDFRTDTVDAAIHFGLPHWPGT----ELVFL-MHETVIPVCSPAFRE-------- 179

Query: 188 KHNLITFGDLI----------PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           ++ L   GDL+          P   E   W  + D  +    +  +  + + +I +    
Sbjct: 180 RYGLSQPGDLLHVPLLHMTTRPDAWE--QWFRSHD--VVFDNVHGMLFDQFTTIAEAASA 235

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVI--TPSFTVYF--CYPEALKNTGKLKAFRNFIFLK 293
           G G +L+P +++++     R++  V     S   Y+  C P+       L++FR++I  +
Sbjct: 236 GVGASLIPSFMIEEELRSGRLVAAVTGEVESEEAYYLACMPDR-AGYAPLESFRSWIVSQ 294

Query: 294 A 294
           A
Sbjct: 295 A 295


>gi|170702039|ref|ZP_02892956.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133049|gb|EDT01460.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 322

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 124/284 (43%), Gaps = 3/284 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  +
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASRDYLARHGTPKTPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +          E        +  + E + +  QVN   ++      G GIA + 
Sbjct: 185 LPNHVCLRLDTPASPASEWRLERGDDEETVYELQPAPFQVNVPDALCVAVRAGRGIACVA 244

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            Y V D+     L+R++ +    + +VY  Y        K++ F
Sbjct: 245 LYTVLDDLREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|145297515|ref|YP_001140356.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850287|gb|ABO88608.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 307

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 91/185 (49%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA+SGSFT AA  L L+ S++S+ I  LE  +G+KL +R  R ++LT +G    
Sbjct: 10  VRHFVAVAQSGSFTVAALTLGLTGSALSKSIVRLEARLGVKLLHRTTRRVSLTLEGEAYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    LE T+         PSG++RI      G+  +   L +    +P + + + 
Sbjct: 70  ASCLQAIRVLEETESSFASEKQSPSGRVRIDLPSAFGRRHVLPILLDLAGSHPQLDLSVT 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            + + +D+     D  +R+      + L+ R+L    +    AP YL   R PL+ ++L 
Sbjct: 130 FNERKVDLIEANIDLVVRIGALEDQADLVARRLGEQKLVICGAPSYLALHRVPLTPKDLS 189

Query: 188 KHNLI 192
           +H+ I
Sbjct: 190 QHDCI 194


>gi|113868361|ref|YP_726850.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113527137|emb|CAJ93482.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 301

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 118/253 (46%), Gaps = 22/253 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD   L +F  VAR GS +  A Q HL+ ++ S++IS LET VG  LF+RHA G+ LTE 
Sbjct: 6   FDLVTLGLFVAVARQGSISAGARQSHLAVAAASKRISDLETAVGAPLFFRHAAGVQLTEA 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +   +E     + + +    G++R+          L  +L  F+  +P I
Sbjct: 66  GQACFHHALTILQDVERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLASFMQRHPTI 125

Query: 123 QIQLILDN-KDIDISM--DYADCAIRL-RKPIQSSSLI---QRKLVTIHMHAYAAPHYLK 175
           +I+L   N +DI  ++  + AD  I   R P      I   Q +LV I       P++  
Sbjct: 126 RIELEEQNSRDIVAALVENRADVGIFADRTPAAGLMTIEYRQDELVII-----TPPNHPL 180

Query: 176 NCREPL---SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
             R P+      E D  +L     L  + +E+ + L   DRP    R+  +QV S+ ++ 
Sbjct: 181 AARGPVHYADTLEFDFVSLPQETSLAARLLEESSRL---DRPF---RLR-IQVRSFDAMC 233

Query: 233 QYCVLGSGIALLP 245
           +  + G G+ +LP
Sbjct: 234 RMVMAGLGVGVLP 246


>gi|56697036|ref|YP_167398.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678773|gb|AAV95439.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 307

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 125/274 (45%), Gaps = 15/274 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--K 65
           L  F +    GS   AA +  ++QS++S+QI  LET +G +L +R ARG+  T  G    
Sbjct: 7   LETFAIALDEGSLNRAARRRGITQSAVSQQIKQLETSIGQQLLHRTARGIHATRAGDLVY 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +H  T    +   T +++  E+SV  SG  RI+ +  LG++++   L E    +PD+ I 
Sbjct: 67  VHAQTLLSGYNRMTAELDQLENSV--SGTFRISVSSFLGRSVIGPMLIEMNAAHPDLNIV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+++ +D+  +  D AIR  + +  +    RK+  +     A P YL     P   ++
Sbjct: 125 MRLEDRLVDVVREGYDLAIRTGR-LGDTDGFGRKISALDTVLVATPAYLDRVGRPAQPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           + + + I   +      + F  L    R    P       +    IM+    GSG   +P
Sbjct: 184 MKRLDFIQHHE---DQTKGFFPLRRDGREYPAPVRVGFTADDPDLIMRAVASGSGYTRVP 240

Query: 246 DYIVKDNPNLVRIMEDVITPSF-----TVYFCYP 274
            ++V D   +     +V+ P++      V+  YP
Sbjct: 241 RFMVAD--EIASGALEVVLPAYRPPNKDVFAVYP 272


>gi|86138809|ref|ZP_01057381.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85824456|gb|EAQ44659.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 322

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 130/298 (43%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD ++VF  VAR  S + A   L +  +++ R+I+  E  +   LF +  +G  L+
Sbjct: 25  MDAQWDDMKVFLAVAREASLSGAGRILKMDPATVGRRIARFEAALETPLFVKSPQGYALS 84

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L          +      L   S   SG++RI         +L          +P
Sbjct: 85  AAGDRLLVHAEAAEQAMRAGAEALTGPSDTLSGQIRIGAPDGSANYILPQVCAAICEEHP 144

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ IQ++   + I++S   AD A+ +  P     L+Q KL    +H   + HYL+     
Sbjct: 145 DLDIQIVALPRVINLSRREADMAVTVSAPTAGQLLVQ-KLTDYKLHMVGSHHYLRKHPPI 203

Query: 181 LSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             +++L  H +I +   IP  +  ++ ++++     +G  R++ L  NS    ++    G
Sbjct: 204 KKLEDLKGHKMIGY---IPDMIFDQELDYISN----LGIERVA-LASNSVSVQIKLAAQG 255

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + + +  D+ +  +  L +++ D I+ + + Y    +  + + +L  F   +    RD
Sbjct: 256 TALCVAHDFSLPAHRMLRKVLTDKISLTRSFYLVRHQGDQRSERLNRFARALTKGIRD 313


>gi|332286516|ref|YP_004418427.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330430469|gb|AEC21803.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 306

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 4/125 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R FY VA+ GS + A+E LH++ S+ISRQ+S LE ++G  LF R ARG+ LTE G  L 
Sbjct: 6   IRYFYEVAQKGSLSAASESLHVAVSAISRQVSTLEQDLGSPLFLRSARGMLLTEAGELLL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGK--LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           R        LE   +    ++++ +G   LRIA T  L  + L   L  F  ++PDI+ +
Sbjct: 66  RHVRRA--TLEDQAVRSSIAALRNTGHSVLRIACTQGLANDFLPSTLAHFERMHPDIRFR 123

Query: 126 LILDN 130
           + +D+
Sbjct: 124 IWVDS 128


>gi|170750788|ref|YP_001757048.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657310|gb|ACB26365.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 318

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 129/291 (44%), Gaps = 12/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V   G+ T AA  L  ++ S+SR+IS LE  +G++L  R +R ++ T +G  
Sbjct: 13  DDVRAFCAVVDLGTVTAAAATLQETKGSVSRRISRLEQALGVRLMARTSRAVSPTAEGLA 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +    L+      +++   P+G LRI T+ID G  ++   +  F   YP I ++
Sbjct: 73  FYAKAQDSLTLLDEAAETARDARTVPAGHLRITTSIDFGIEVMPEIVASFRAAYPQITVE 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE--PLSI 183
           ++  +  +D++ +  D A+RL    ++     R +V   +            R   P  +
Sbjct: 133 MLNTDARLDLAANRIDLALRLGGAEETG---YRAMVLATLALALYAAPAYLERRPAPADL 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+LI   + I       +       P+   P    ++V+ + + ++  + G+GI 
Sbjct: 190 ADLRDHDLILARERIGTAGLTLSDGRGRTEPLSLSP---AIRVSDFATALRLTLAGAGIG 246

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP  +     +   +VR++    T S T+        +   +++ FR  +
Sbjct: 247 HLPSLVAARAVEAGQIVRVLGPWATRSSTLRAVTLAGRELPARVQVFREHV 297


>gi|110681090|ref|YP_684097.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109457206|gb|ABG33411.1| transcriptional regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 295

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 19/294 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR GS T AA +L L+QS++SRQI  LE ++GI LF R  R L LT +G+   
Sbjct: 14  LTCFEAVARLGSATDAAAELSLTQSAVSRQIKALEGQLGITLFERRGRQLILTSRGAAYV 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +L    + ++  +   +G L ++     G + L   L++F   +P++ + L 
Sbjct: 74  SDIRDILQRLTRASVAVRTDAR--AGALNLSILPAFGMHWLAPRLQDFAQTHPEVTVNLS 131

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
                 D      D AI   +   P      +  + V         P  L + R  LS  
Sbjct: 132 TRLAPFDFRDTQFDAAIHFGREDWPAADYLPLMPETVVAVCAPSLIPTPLSDARGILS-- 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
               H+L+   +  P+      WL ++D     P    +  + + ++ Q  V G G+ALL
Sbjct: 190 ----HDLMHL-ETRPRGW--VRWLRSLDIDASLP--PGMVFDQFSTMAQAAVHGLGVALL 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P ++     ++  LV           + Y  +P+  + +  L +FR ++  +AR
Sbjct: 241 PTFVADPFLNSGQLVLASPHANQSIGSYYLVWPKDREESHSLTSFRTWLRDQAR 294


>gi|73542969|ref|YP_297489.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120382|gb|AAZ62645.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 303

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 4/192 (2%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+    F  V   GS   AA    ++   I R+I+ LE  +G+KL +R  R + +TEQ
Sbjct: 2   DKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARIGVKLLHRSTRRIVVTEQ 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+       +    L+  ++ + E   K +G L ++     G+  +  +   FL   P++
Sbjct: 62  GAVFMEQCKKALADLDRAEMLIAEGKHKATGHLIVSAPAAFGRKHVAPHAPAFLAANPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI   L ++ +D+  +  D  IR+   I   + +  KL T        P Y      PL+
Sbjct: 122 QISFNLTDRVVDLVREGYDVGIRIGGAI-DPNFVAIKLATNKRVVCGTPAYFAKHGVPLT 180

Query: 183 IQELDKHNLITF 194
           + +L+ HN + F
Sbjct: 181 LDDLEHHNCLAF 192


>gi|332993693|gb|AEF03748.1| DNA-binding transcriptional activator GcvA [Alteromonas sp. SN2]
          Length = 297

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 130/297 (43%), Gaps = 27/297 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F   AR  SFT AA++L ++Q+++S QI  LE  + +KLF R  R L LTE+G  
Sbjct: 9   NALKAFEAAARHLSFTKAADELFVTQAAVSHQIKALEEFLSMKLFIRRNRTLLLTEEGQA 68

Query: 66  LHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  L E T+  L   S    G + +A         L   + +F +  PDI +
Sbjct: 69  YFLELKDIFKNLQEATERLLARGS---KGAITVAMPPSFASQWLVPRISQFSVAQPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SI 183
           ++   + D     D  D AI   K  + S L   KL    +    +P  L N  +PL S+
Sbjct: 126 RIKAVDFDEGFLDDDVDVAIYYGKG-RWSGLQADKLHREFLTPLCSP-MLFNGPKPLSSL 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS------YLSIMQYCVL 237
            +L  H L+   DL     +  NWL  V        +S + VN        + ++Q   L
Sbjct: 184 ADLRHHVLLH--DLSRAAWK--NWLKHVG-------VSGVNVNQGPVFSHSMLVLQAAAL 232

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G GIAL    + +   D   L+   E+ +      Y    E+    GK+ AFR +I 
Sbjct: 233 GQGIALGNTVLARPELDAGRLIMPFEEKVESRDAFYLVCEESQAELGKIAAFREWIL 289


>gi|327485866|gb|AEA80272.1| D-serine dehydratase transcriptional activator [Vibrio cholerae
           LMA3894-4]
          Length = 314

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 77/148 (52%), Gaps = 12/148 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AA++L L+ S+IS +I+ LE E+GIKLF R  R + LTE
Sbjct: 16  SFQLSKLHTFEVAARHNSFSLAADELSLTPSAISHRINKLEEEIGIKLFERTHRKVVLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQES-----SVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           +G +       +YH L+ T   L +      + + SG L I +     Q  L   +  F 
Sbjct: 76  EGQR-------IYHSLQKTLNNLNQEITDIKNGETSGLLTIYSRPSFAQCWLVPRIHAFK 128

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAI 144
            LYP I ++L+  N++I       D AI
Sbjct: 129 ELYPSIDLKLLTGNENISFQGSGIDVAI 156


>gi|206973636|ref|ZP_03234554.1| transcriptional regulator, LysR family [Bacillus cereus H3081.97]
 gi|217959929|ref|YP_002338485.1| transcriptional regulator, LysR family [Bacillus cereus AH187]
 gi|222096018|ref|YP_002530075.1| transcriptional regulator, lysr family [Bacillus cereus Q1]
 gi|229139122|ref|ZP_04267699.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-ST26]
 gi|206747792|gb|EDZ59181.1| transcriptional regulator, LysR family [Bacillus cereus H3081.97]
 gi|217064844|gb|ACJ79094.1| transcriptional regulator, LysR family [Bacillus cereus AH187]
 gi|221240076|gb|ACM12786.1| transcriptional regulator, LysR family [Bacillus cereus Q1]
 gi|228644477|gb|EEL00732.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-ST26]
          Length = 300

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 24/285 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEVEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +I++ ++ L   DI   +   +  I +   P+Q   +I   L    +       +     
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELNIGITFLPVQDKEIISTPLYKSELIIVVPTGHQLAEH 181

Query: 179 EPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
             +SI EL  + LI         +LI    + FN+     +PI       L++++  S++
Sbjct: 182 NHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LEISTMESLI 231

Query: 233 QYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 232 QMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|52143051|ref|YP_083779.1| LysR family transcriptional regulator [Bacillus cereus E33L]
 gi|51976520|gb|AAU18070.1| transcriptional regulator, LysR family [Bacillus cereus E33L]
          Length = 300

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 24/285 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSETIFHEVEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +I++ ++ L   DI   +   +  I +   P+Q   +I   L    +       +     
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELNIGITFLPVQDKEIISTPLYKSELIIVVPTGHQLAEH 181

Query: 179 EPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
             +SI EL  + LI         +LI    + FN+     +PI       L++++  S++
Sbjct: 182 NHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LEISTMESLI 231

Query: 233 QYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 232 QMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|87121982|ref|ZP_01077867.1| probable transcription regulator protein [Marinomonas sp. MED121]
 gi|86162780|gb|EAQ64060.1| probable transcription regulator protein [Marinomonas sp. MED121]
          Length = 306

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 137/298 (45%), Gaps = 25/298 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   GS+T AA++L  +++ +S Q+S LE  + I+L  R  R +  T  G   +
Sbjct: 1   MEAFITVFEEGSYTSAAKRLGRTKAMVSTQVSQLEAHLQIRLMTRSTRSIQATAMGRTYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  + +L +SS   +GKLRIA     G+ ++   + + +  YP+++I ++
Sbjct: 61  EQAKLLLEDLDNLESQLTQSSQNVAGKLRIAVPTTYGEQVVMPFVAKLIETYPELEIDIL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
           L ++ +D+  +  D AIR+ + ++ SSLI   +  ++M   A+  +L++   P    +L 
Sbjct: 121 LSDRYVDLINEGVDAAIRIGR-LEDSSLIASHIGKVNMMLCASQAFLESYPTPKQFSDLS 179

Query: 187 ---------DKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISC-----LQVNSYLSI 231
                     + N  +F     + +E+ + L   ++    E R+       ++VNS  + 
Sbjct: 180 DLPCVLDDNSRENYWSF-----EAIENQDILGRNNKKGRIESRVKVTPNYKIRVNSASAA 234

Query: 232 MQYCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +Q    G  I   P +  +D  N   L+ I+       F +   YP     + +L  F
Sbjct: 235 VQLARHGKLICYTPAFAAQDLINQGLLIPILAKAHQTHFPIQIVYPHRKHTSARLTQF 292


>gi|238794104|ref|ZP_04637721.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238726609|gb|EEQ18146.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 304

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 11/296 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF      GS + AA +L+++ ++ S  +  LE+++G++L  R  R L LTE+G+   
Sbjct: 7   LDVFVRTVDCGSLSEAARRLNITPAAASIAVKRLESQLGVRLLARSTRSLRLTEEGASYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L   +  +Q      SG L+++   D G+NLL   L +F   +P IQ+ L+
Sbjct: 67  DSARIALGALIEGEQAIQRKITGLSGVLQLSAPSDFGRNLLVDWLNDFKRQHPHIQLHLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186
           L+++  D+  +  D A+R   P   SSL+   ++T H     A+P YL     P +  +L
Sbjct: 127 LNDRHADLFREPVDIALRFGVPT-DSSLVALPVLTQHRRMLCASPAYLARYGVPQTPAQL 185

Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIM-QYCVLGSGIALL 244
             H+ +    L  +    +N W         E  +S   V+    I  ++ + G GIA  
Sbjct: 186 AAHHSV----LYQRNGHLYNQWRLMRQGEEQEVTMSGEYVSDDGEIARRWALAGLGIANK 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               V D+     LV+++   +  +  +    P   + + +++  + F+  + RDW
Sbjct: 242 AAIDVVDDIRAGRLVQVLPGWLGEALPLNLLCPHRSQVSERVRGLQTFLQQRCRDW 297


>gi|330891616|gb|EGH24277.1| fused ISPsy20 transposase IstB/transcriptional regulator LysR
           family protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 315

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 13/273 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLAVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHIRMGCTEGFGSFFITPQLSHFLDSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   A   I L +P +    +  KL    +  YA   YL +     
Sbjct: 131 ISLDILPLPHFISLSKREAGIVIALERP-EHGPYVCCKLCDYSLRLYATQAYLDSHPAIE 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVLGS 239
              +L  H  I++ D +    E   +L+ +  P  +      Q+ S   I QY   + G 
Sbjct: 190 QKADLSGHVFISYVDDLAFSSE-LLYLSNL-LPNAQA-----QLRSTSVIAQYTAALQGR 242

Query: 240 GIALLPDYIVKDNPNLVRIM-EDV-ITPSFTVY 270
            +A+LP ++   +P L+ ++ E+V IT  F +Y
Sbjct: 243 ALAILPCFLAAQDPRLLPVLAEEVNITRQFWMY 275


>gi|262373710|ref|ZP_06066988.1| transcriptional regulator [Acinetobacter junii SH205]
 gi|262311463|gb|EEY92549.1| transcriptional regulator [Acinetobacter junii SH205]
          Length = 308

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 116/245 (47%), Gaps = 9/245 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +TE G 
Sbjct: 4   FDDYYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTELGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +V  ++E  +  L +   +P G ++I+    +    ++  L +FL  YP ++I
Sbjct: 64  EFYEECCKVITQVECAENVLLKQKSEPQGLVKISCPPLMMHFQIRKILNQFLKTYPKVEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R     
Sbjct: 124 SLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RSIKHF 182

Query: 184 QELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +L  +  I+ G      +  F       T+D P  +PRI   + N    +      G G
Sbjct: 183 SDLKDYPSISLGTQKANYIWHFCNTRTGETMDVPY-QPRI---KSNDLAGVYYAVADGLG 238

Query: 241 IALLP 245
           IA LP
Sbjct: 239 IADLP 243


>gi|218462470|ref|ZP_03502561.1| LysR family transcriptional regulator [Rhizobium etli Kim 5]
          Length = 208

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 2/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G F+ AA +L++S + +   +  LE  +G++L  R  R ++LTE G   +
Sbjct: 7   LAVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEERLGVRLLNRTTRKVSLTETGKYYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +S++  +L+         S  P G L++ T+  + + LL   + EF+ LYP I +   
Sbjct: 67  ERSSQILAELDEADRTAGALSTTPRGTLKVYTSGAIVRFLLP-VVSEFMELYPSISLDFS 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +    +D+  D  D  +R   P   SSLI RKL         +P Y +N   P    E+ 
Sbjct: 126 VGEGMVDMIEDGYDLVMRTLLP-PDSSLIARKLTPWRHVLVCSPAYAENHSMPKKPAEVA 184

Query: 188 KHNLITFG 195
            HN + + 
Sbjct: 185 DHNCLQYA 192


>gi|294789438|ref|ZP_06754675.1| LysR protein [Simonsiella muelleri ATCC 29453]
 gi|294482651|gb|EFG30341.1| LysR protein [Simonsiella muelleri ATCC 29453]
          Length = 298

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 126/279 (45%), Gaps = 17/279 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L VF  +A   S T AA++L+L+  S+S+ +  LE ++G+ LF R  R + LT+ G
Sbjct: 5   DFGQLLVFQAIAEEKSITAAAKKLNLAVPSVSKSLKLLEHKMGVPLFTRTTRTIQLTDSG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L + TS     L     E+ E    P G ++I  +      + +  L +F   YP I 
Sbjct: 65  LQLWQNTSAHLIALNQAFEEVSEQHQTPRGTVKITLSQVHFDLIFKDILLDFYAQYPHIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +   ++N  ++++    D  IR    +    + ++   +I    Y +  Y++    P S 
Sbjct: 125 LDFSINNATVNLAEQGFDLGIRFGNTLADGVVARKIYPSIRQGIYVSNSYVEKYGIPQSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H +I F  +  K +E F  L  +D  + E  + + L +N    I+     G GI 
Sbjct: 185 NDLAAHRMIGFYFMTAKKIEPF--LLNIDGVVQEVFVHNVLILNDTDKIISAIHAGVGIG 242

Query: 243 LL----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEAL 277
            +    PD  +     L+ ++E+        + C+PE  
Sbjct: 243 RIFDNAPDVALN---GLIPVLEE-------NWLCFPETF 271


>gi|262198989|ref|YP_003270198.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262082336|gb|ACY18305.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 306

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 131/292 (44%), Gaps = 19/292 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D+ R+F  +  +GS   AAEQL    SSISR+++ LE  +G +L  R  +G   TE G
Sbjct: 7   DTDE-RLFLRIVEAGSLKAAAEQLGTDPSSISRRLAALEARLGQRLLRRSTQGSRPTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++   ++  + +  +  +     +P G+LR+    + G   +   L++ +  + ++ 
Sbjct: 66  ERYYQGLVDIIAQQDALEAAVGRLRDEPQGRLRVTAPPEFGVRFVVPVLEQLVRAHAELS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L     +++    D A+R+   +  SSL  R+L ++     AAP YL+    P ++
Sbjct: 126 VELSLGTGFSNLAEQGLDVAVRI-GTLPDSSLRARRLGSVPRLLVAAPSYLETHGTPRAV 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL------ 237
            +L  H  +++           N ++T+           LQV  Y  +     L      
Sbjct: 185 PDLAAHRFVSYA--------TDNGVSTLRLSDASGHQHELQVRPYFVVNSIATLVRMVED 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+G+   P +  +   D+  +V ++ D  +  F +   Y        K++AF
Sbjct: 237 GAGMIYAPRWAFERALDDGRVVELLADHSSQPFPLQAVYLGRHYVPAKIRAF 288


>gi|167565693|ref|ZP_02358609.1| transcriptional regulator [Burkholderia oklahomensis EO147]
          Length = 322

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 126/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   DNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P + ++
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVSVSHLPDSGYVAQTCGTSCSVLVASREYLARHGAPTTPED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L KH  +          E   W   ++R  G+  +     +  Q N   ++      G G
Sbjct: 185 LAKHVCLRLDTPASPGGE---W--RLERDDGDETVYELPPAPFQANVPDALSVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F
Sbjct: 240 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTF 288


>gi|116251581|ref|YP_767419.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256229|emb|CAK07310.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 295

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 125/289 (43%), Gaps = 17/289 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VAR  SF  A E+  ++ S+IS  +  LE  +GI+L  R  R ++LTE G  L
Sbjct: 8   ELAAFAAVARHKSFRKAGEERGVTASAISHAVLNLEDRIGIRLLNRTTRSVSLTEAGELL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                  + ++      L      P GK+RI     +G  ++   +   L   P++Q+++
Sbjct: 68  ISHLDPAFGEMAAALDALNRYRDTPFGKVRINVPNSIGPFVIGRVIGPLLKKNPNLQLEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +DI  +  D  IR  + +    +  R    I +    +P Y +   +P +  EL
Sbjct: 128 NATDRLVDIVEEGFDAGIRFGERVTEGMIALRIKPRIRLVVVGSPAYFETRPKPATPHEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +H  I   ++ P     + W    D      +P G      L ++ +  +MQ  + G G
Sbjct: 188 KRHLCIQ--NMFPSGAR-YAWEFEKDGQAVSFQPTGP-----LSLDDHELMMQAALGGVG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +A + +  V+    +  L+++++D   P   +Y  YP     +   +A 
Sbjct: 240 LAYVWEPRVEKAIASGELIQVLDDWCQPEEPLYLYYPSRRHMSAGFRAL 288


>gi|114769442|ref|ZP_01447068.1| putative transcriptional regulator, lysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114550359|gb|EAU53240.1| putative transcriptional regulator, lysR family protein [alpha
           proteobacterium HTCC2255]
          Length = 303

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 1/175 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  +   GS T     L ++ +  S++I  LE  +G++LF R  R LT T  G  
Sbjct: 5   DSLRVFARIIELGSITSGGRDLRMTPAVASKRIKELEKHLGVRLFNRTTRSLTPTGVGRV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   +V   ++  +  + + S  P G +RI T +  G+ ++   +  F+  +P  +I+
Sbjct: 65  FYKEAKKVLASIDNAENAISQFSDTPRGVIRITTPLGFGRRVIAPLVPSFVDKFPGTEIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + L ++ +DI  +  D A  +  P   S+L  RK+        A+P YL     P
Sbjct: 125 MRLSDRKVDILAEELDMAFFIGTP-PDSNLKLRKIADCKRILCASPEYLSRMGTP 178


>gi|88704623|ref|ZP_01102336.1| LysR family transcriptional regulatory protein [Congregibacter
           litoralis KT71]
 gi|88700944|gb|EAQ98050.1| LysR family transcriptional regulatory protein [Congregibacter
           litoralis KT71]
          Length = 312

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 127/263 (48%), Gaps = 13/263 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D     +VV + G F+ AA+ L + +S +SR IS LE  +  +L  R  R   +TE G  
Sbjct: 8   DYFYFVHVVEKRG-FSSAAQALGMPKSRLSRHISALERRLDTRLIQRTTRQFNVTESGEL 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    +  ++E  +  ++ S    SG + ++ ++ + Q  ++  L  FL+  P + + 
Sbjct: 67  FYRHARALIDEMEAAEAAIKRSKNSLSGNVVLSCSVGVAQFAVKEILARFLVDNPLVTVA 126

Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             + N++ID+     D +IR    P+  SSLIQ+KL T+  + + A  Y +      S +
Sbjct: 127 QQVTNQNIDLVAAGVDLSIRGHVGPLPDSSLIQQKLATVEWNLFCAAGYQEQHGLIDSPE 186

Query: 185 ELDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L  H+ ++ G   P+    +++++   +V+  I    I  L+     ++ +  + G G+
Sbjct: 187 DLLNHDALSLGWQSPRGKWSLQNYSG-ESVEVAI----IPRLKSEDMSTLKEAAIQGLGV 241

Query: 242 ALLPDYIVKDNPN---LVRIMED 261
             LP Y  +   N   L R++ D
Sbjct: 242 VALPAYTCRQELNGGHLERVLTD 264


>gi|87118324|ref|ZP_01074223.1| Transcriptional regulator [Marinomonas sp. MED121]
 gi|86165958|gb|EAQ67224.1| Transcriptional regulator [Marinomonas sp. MED121]
          Length = 301

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 114/259 (44%), Gaps = 9/259 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V    SF+ A E+L+L+ SSISR I+ LE   G KL  R  R + L  +G+++
Sbjct: 12  EMAVFVAVVEHESFSKAGEKLNLAPSSISRSIAKLEAAFGTKLLERTTRKVKLNPKGAQV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +    +      Q  + + SG LR+A      + ++     +F   YP ++++L
Sbjct: 72  FEQCQSMLASAKLAANVAQSMAGEVSGVLRVAAPKAFAKQVISPIALDFAEAYPKVRVKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +  ID   D  D  I   + PI+   L+ + L T  +   A+P YL     P +  +
Sbjct: 132 MAVDHFIDPISDEVDVIIHFTQHPIE--GLVAKHLSTTTLILCASPDYLAKNGIPKTPDD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+ IT G++     +D          I         VN         + G GIA  P
Sbjct: 190 LTQHDCITLGEV---AGDDIWRFQKGGEKIKVQVAEAFSVNHTQIRRDAALRGLGIASFP 246

Query: 246 DYIVKDN---PNLVRIMED 261
           D+ +++      L+ I+ D
Sbjct: 247 DFAIQETIARGELIPILSD 265


>gi|84685155|ref|ZP_01013054.1| transcriptional regulator, LysR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666887|gb|EAQ13358.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 295

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 119/290 (41%), Gaps = 20/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  +GS T AA +L L+QS++SR I  LE ++G  LF RH + L  T     L 
Sbjct: 13  LAAFDAVIATGSVTAAARELDLTQSTVSRLIRTLEEQLGRDLFVRHKKRLVPTPAALDL- 71

Query: 68  RVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +V   L+  Q    +    P  G L +AT   L    L   LK FL   P I + L
Sbjct: 72  --AGDVGRALDLIQRASMKVVANPEGGSLSVATLPTLNAQWLGPRLKSFLDTNPGINLSL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL--KNCREPLSIQ 184
               +      +  D  I         +    +L   H  A AAP+ +   +   P  + 
Sbjct: 130 TTRLRRFSFETEPVDAVIYFGDDDWPGA-HHLRLFGEHYTACAAPNLIAGADVTAPADLA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L    L T      + +   +W A  D P   PR   +  + +  + Q  + G G+A+L
Sbjct: 189 RLPLLQLET------RPLAWADWFAAHDAP--PPRADGMLFDHFSMMTQAAIAGLGVAIL 240

Query: 245 PDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
           P Y+     +  R +E + TP+     + +  +PE       L AFR+++
Sbjct: 241 PAYLAATERSEGR-LEPLFTPAVPGRGSYWLAWPEPRDAYPPLVAFRDWL 289


>gi|167032298|ref|YP_001667529.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166858786|gb|ABY97193.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 309

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 130/296 (43%), Gaps = 14/296 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V  +GS    A  L LS +++S+ ++ LE  + ++L  R  R + LT  G++
Sbjct: 5   NAIRCFIKVVEAGSIAAGARNLGLSPAAVSQNLARLEGHLRVRLLSRTTRSMALTPAGTQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   L   +  +     +P G+L IA+T   G+++L   +  F   YP + I+
Sbjct: 65  YYERVKHIDRDLALAEQAVTTPDSEPQGRLCIASTSAFGRHVLAPLIPAFSARYPLLSIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI  ++ ++ + +  D ++R+  P     L+ R +  I     A+P YL +   P + + 
Sbjct: 125 LITTDRRVNHAREDIDVSLRI-APQLEDQLLARHIARIPFICCASPGYLHSAGVPATPES 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-SIMQYCVLGSGIALL 244
           L  H  + F    P       W    D    +     + ++  + ++ Q  +   GIA L
Sbjct: 184 LLTHRCLVF--RYPVDGRFLRWGFVRDGLRFDAEFGSVLISDDIDALTQMALHDGGIARL 241

Query: 245 PDYIVKD---NPNLVRIME-------DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++IV+    +  LV + E          T    +Y C  +    T K++ F +++
Sbjct: 242 AEFIVRPHLASGALVPLFEFSDSGQAYAQTEPMDIYLCLADRFAMTTKVRVFMDYL 297


>gi|115376597|ref|ZP_01463828.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366402|gb|EAU65406.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 319

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 124/275 (45%), Gaps = 9/275 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +   V R+ SF+ AA +  +  S++SR+I+ LE+ +GI+L  R  R L LT+ 
Sbjct: 7   LDLNDVALLVRVVRTQSFSAAARERGVPVSTVSRRIARLESVLGIRLLERTTRRLRLTDA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L      ++E   +P G++RI   I LG   +   +  +L  +P +
Sbjct: 67  GREYFGHAERAVDDLAQGTDRVRELQKEPRGRVRIMAPIVLGAA-VSNVIYTYLARHPGV 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPL 181
            + L L+ + +D+  +  D AI L   + S+  + R+L        YA+P YL+    P 
Sbjct: 126 SVDLELNERRVDLLAEGFDIAI-LTGKVDSTDFVARELWRATRKLLYASPRYLEARGAPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L +H+ I                    R   EPR     V+ + +  +  + G GI
Sbjct: 185 RVEDLARHDCIATRAADGIATWTLAQGRRKQRFAFEPR---FYVSEFSAAHRAVLAGVGI 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           A+LP+    ++     LVR+++     S  V   Y
Sbjct: 242 AMLPEVHCAEDVAEKRLVRVLDGYEGESGGVSLLY 276


>gi|107026107|ref|YP_623618.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692709|ref|YP_838242.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170738041|ref|YP_001779301.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895481|gb|ABF78645.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650709|gb|ABK11349.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169820229|gb|ACA94811.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 307

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 130/292 (44%), Gaps = 17/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V    SF+ AA QL +S ++++R +  LE  + ++L  R  R L+LTE G +  
Sbjct: 7   MRVFTRVVELSSFSLAARQLGMSAAAVTRSVGMLEAHLNMRLLNRTTRSLSLTETGREYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  KL+  +  L + +  P G LRIA +       L   L  + + +P ++  + 
Sbjct: 67  DGCRTIIEKLDEIESNLAQVNRDPHGTLRIAASATSVAAGLGALLSTYRIEHPRVRFDVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+     D        + +S+ + R L ++     A+P YL     P+   EL+
Sbjct: 127 TFDIQVDMVEGGYDVCFCDDHRLVNSTFVSRTLTSVRDVIVASPGYLARHGTPVEPVELN 186

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
            H L+T  +   +     NW  + VD   G  RI   + L   S   +    +   GIA 
Sbjct: 187 THCLLTVSNGAAR-----NWEFSDVD---GSSRIYTGNALASTSNTMVRIAALNHMGIAQ 238

Query: 244 LPDYIVKDN---PNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP  +V D+     LV I+E  DV      V   YP     + K+++F +++
Sbjct: 239 LPHPLVADDLASGTLVPILERYDVNGGPRRVSILYPSRNYLSTKVRSFIDYV 290


>gi|300717426|ref|YP_003742229.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299063262|emb|CAX60382.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 325

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 1/181 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F V+  + S T AA++  ++  ++SR+++ LE E+G +L  R  R ++LT++G +    
Sbjct: 38  LFLVITETRSLTQAAKRQGITAMAVSRRLASLERELGTRLLQRTTRSVSLTQEGMEFLPY 97

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +    +  +     S+   +G LRI      G+  +   + E L   P++ I L L 
Sbjct: 98  AQALIEAEKGARALFSPSTQGAAGLLRITAPSGFGRRNILPLISELLADNPELSIDLQLS 157

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
              IDI     D AIR+  P++ S+LI RK+        A+P YLK    P S+++L KH
Sbjct: 158 EDVIDIVGRGIDVAIRI-APLKDSTLIARKIADSPRVICASPDYLKVNGMPKSVEDLMKH 216

Query: 190 N 190
           +
Sbjct: 217 H 217


>gi|290511073|ref|ZP_06550442.1| HTH-type transcriptional regulator PtxR [Klebsiella sp. 1_1_55]
 gi|289776066|gb|EFD84065.1| HTH-type transcriptional regulator PtxR [Klebsiella sp. 1_1_55]
          Length = 295

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 33/301 (10%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GSFT AA  L  +++ +S  +  LE E+G+ L  R  R L LT+ G+  
Sbjct: 6   RVTMFIAVVDAGSFTLAAAALGQTKAVVSFNVRQLENELGVTLLLRSTRRLRLTDAGTLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +    E  Q E++ S    SG+LRI TT + G  ++   L  F   +P ++++ 
Sbjct: 66  YQRGVALLKAAENLQDEVRASHTGLSGELRITTTPEYGAQVIIPALSAFARRHPALRVRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +   D+  +  D AIRL   +  S     ++ +  +   A+P +L +          
Sbjct: 126 VSSSHHADLISERFDVAIRL-GTLADSRYRATRIASFAILPVASPAWLAS---------- 174

Query: 187 DKHNLITFGDLI-------PKCMEDFNWLATVDRPI-------GEPRISCLQVNSYLSIM 232
             H + T  DL         +      W    D+           PR S    +S  ++M
Sbjct: 175 --HPVQTLSDLAQADWIIHERLSAPLRWQLRTDQQTEVDFAIASAPRFSA---DSATALM 229

Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + + G GIALLP ++V +      LV ++ +   P   VY  YP+A     +++AF +F
Sbjct: 230 SFALAGCGIALLPAWLVAEKVAQRELVPLLSEYHFPQQGVYALYPDAQHMPTRVRAFIDF 289

Query: 290 I 290
           +
Sbjct: 290 L 290


>gi|254522772|ref|ZP_05134827.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219720363|gb|EED38888.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 289

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 2/140 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR GSF  AAE+LHLSQS+IS+QI GLE  +   LF+R  R +TLT+ G  
Sbjct: 9   NALRGFEAAARLGSFHRAAEELHLSQSAISQQIRGLEDALQQPLFFRQGRSVTLTDAGLD 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   T  +  +L  + I   +   KP+ +L + T+    ++ L   L +F  L+PD  + 
Sbjct: 69  LLETTQSLLRQL-ASGIRRLDQYRKPN-QLIVNTSPAFARHWLVPRLADFHRLHPDADLW 126

Query: 126 LILDNKDIDISMDYADCAIR 145
           L+   +  D++    D A+R
Sbjct: 127 LLTSEEAPDMTTQTLDVAVR 146


>gi|167631751|ref|ZP_02390078.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0442]
 gi|254743352|ref|ZP_05201037.1| transcriptional regulator, LysR family protein [Bacillus anthracis
           str. Kruger B]
 gi|167532049|gb|EDR94685.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0442]
          Length = 300

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EVGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISAPLYESELIIVVPTGHQLAK 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
              +SI EL  + LI         +LI    + FN+     +PI       L++++  S+
Sbjct: 181 HNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|90578972|ref|ZP_01234782.1| hypothetical transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
 gi|90439805|gb|EAS64986.1| hypothetical transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
          Length = 304

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 122/289 (42%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  SFT AA+ L +S++ +S+ +  LE  +G++L  R  R   LTE G   
Sbjct: 7   QMVVFNALTKQKSFTKAAQLLEISRTQVSKLVQQLEERLGVQLVQRTTRSFALTESGRIF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    V  ++   + EL        G LR+        N +   + EF    P + ++L
Sbjct: 67  AKHCEAVVDEINEAESELLIFGDSQQGSLRVGIAQSFASNHVAPYINEFHEQNPLVNLEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I           + R L        A+P YL     P    +L
Sbjct: 127 SLFDHRVDLISEQLDLWIGFMDS-PPEGFVARHLTNCDFVLVASPDYLAKHGVPYHPDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN IT+     +  +D  W  ++       +++   +V+S  +I    + G+G+  L 
Sbjct: 186 QHHNCITY---FSRERKDNIWNFSLGNEEQHVKVTGNYRVDSADAIRDATISGNGVGYLA 242

Query: 246 DYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y++KD      L+R+M D  +T    +Y  YP       K+  F  FI
Sbjct: 243 TYLLKDEIRQGKLIRLMPDWQLTQHMPLYAVYPRHKYLPSKVNLFIEFI 291


>gi|16263398|ref|NP_436191.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|307308337|ref|ZP_07588042.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307320896|ref|ZP_07600305.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|14524086|gb|AAK65603.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|306893494|gb|EFN24271.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306901138|gb|EFN31745.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 314

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 124/292 (42%), Gaps = 23/292 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA + S + A+    L +S++S +I  LE + G++LF R    L LT+ GS+L R  
Sbjct: 9   FVKVADARSISAASRLHRLPKSTLSHRIRQLEDQFGVELFVREGHQLHLTDAGSELLRHA 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            ++    +     + E   + +G LR+ +T + G  +    L  F   YP + + ++  +
Sbjct: 69  RKIRASCDDAVTAMAEMHKEVAGTLRVGSTGEFGTTVTSELLYAFQKTYPQVILDVVFLS 128

Query: 131 KD---IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+S    D      +P      + R+L T     YA+P YL    +P +  EL 
Sbjct: 129 ARQPFTDVSDMALDGIFHWGEP-SDVDYVSRRLATASYGLYASPDYLAQHDQPANEDELA 187

Query: 188 KHNLITFGD---LIPKCMEDFNWLATVDRPIG-EPRI---SCLQVNSYLSIMQYCVLGSG 240
            H  + F     L P       W   + RP G E  I   + L  N Y ++  + V G G
Sbjct: 188 LHRGLIFRSTTRLQP-------WY--LSRPGGSETEILLTAALTANDYWTLKYFAVAGQG 238

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IA LP + V+       LV ++ +  +    +   Y      + + KAF  F
Sbjct: 239 IAYLPGFFVETECQSGLLVPVLSEWRSRETAINLIYSRRRHVSRRFKAFVRF 290


>gi|295700612|ref|YP_003608505.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439825|gb|ADG18994.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 308

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 124/274 (45%), Gaps = 14/274 (5%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L 
Sbjct: 28  ELGLTAAAVSKRLTQMEQRAGVALVNRTTRRMMLTPEGELYLERARRILDEIDELAELLG 87

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
            +   P G LR+  T+  G++ +   +  F+  YP + +QL L      ++ D  D  IR
Sbjct: 88  SAKKTPKGLLRVNATLGFGRSHIGPAISRFVARYPQVSVQLQLSVTPPPLTDDSFDVCIR 147

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
             +P   + ++ R+L        AAP YL     PL+  +L +HN I     I +  E +
Sbjct: 148 FGEP-PDTRVVARRLAPNRRLLCAAPSYLAAHGTPLTAHDLTRHNCIG----IRQGDEAY 202

Query: 206 N-WLATVDRPIGEP----RI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLV 256
             W  T  R         RI   L  N     +++ + G GI +  ++ ++      +LV
Sbjct: 203 GVWRLTSGRGAARKTEAVRIKGTLTTNDGEIAVKWALEGHGILMRAEWDIRQYLAEGSLV 262

Query: 257 RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++ D  TP+  ++  Y    + + +++AF  FI
Sbjct: 263 QLLPDHDTPNADIFAVYSPRHQMSNRIRAFVEFI 296


>gi|153008734|ref|YP_001369949.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560622|gb|ABS14120.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 304

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 10/259 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD L+ F  VAR+G  + AA QL  S  ++ R+I  LE  +  KLF R+ RG  LT  
Sbjct: 4   FTWDDLQYFLAVARTGQLSTAARQLRTSHVTVLRRIDRLEQALATKLFERNPRGYLLTPI 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +  +    Q E   +    SG +R++T    G   L   L      YP +
Sbjct: 64  GERLVNSAEVMEREAMKFQTEATGNLAALSGVVRLSTLEGFGNFFLADRLPVLAQSYPSL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++++   + + +S   A+ +I L  P ++      KL    +  Y    YL+      +
Sbjct: 124 FVEVVTIQQIMSLSRREAELSITLHMP-RTGPYHSEKLTPYRLFIYGHRDYLERHPPIRT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++ +H  I + D       D  +   +D  R I   +    Q +S  + +    +G G
Sbjct: 183 REDMARHPFIGYID-------DMVFTPGLDYMREILPGQRCTYQSSSIHAQLIATQIGYG 235

Query: 241 IALLPDYIVKDNPNLVRIM 259
           + +LP +I   +P LV ++
Sbjct: 236 LCVLPYFIASRHPELVPVL 254


>gi|83719799|ref|YP_441949.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167580797|ref|ZP_02373671.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167618900|ref|ZP_02387531.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257138123|ref|ZP_05586385.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83653624|gb|ABC37687.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 326

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 29/302 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  ++ +  +P G LR+A +  L    +   +  +   YP +++QL 
Sbjct: 67  DGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLT 126

Query: 128 LDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L    +D I   Y    +   +   + +LI   L+   +   AAP Y++    P    +L
Sbjct: 127 LTEGQLDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAPHRPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIA 242
            +H  I     +P       W   VD P     +  LQ    VNS   +    + G+GI+
Sbjct: 187 IRHACIA----LPAGQHASTW-RFVD-PDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS 240

Query: 243 LLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP+  + D   +  LVRI+ D  +  P   +   YP             N  FL AR  
Sbjct: 241 VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYP-------------NRQFLPARTR 287

Query: 298 KF 299
            F
Sbjct: 288 SF 289


>gi|260549884|ref|ZP_05824100.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407134|gb|EEX00611.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 288

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 117/266 (43%), Gaps = 28/266 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L++F  V   G+   A+ QLH   S+I+ +I  LE E+G  LFYR  + L LT  
Sbjct: 1   MDITQLKMFQAVVECGTMVKASLQLHCVPSNITTRIKQLEEELGAPLFYREGKALKLTPS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQES---SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G     +  +  HK+     E + S      PSG L+I          L   L ++   Y
Sbjct: 61  G----EIFLDYCHKILALCDEAKRSIHPDASPSGPLKIGAIESSATTRLPNLLAKYHQRY 116

Query: 120 PDIQIQLILDNKD---IDISMDYADCAI---RLRKPIQSS-SLIQRKLVTIHMHAYAAPH 172
           P++ IQ+I        +DIS    D AI    +  P+ +  S+ Q  +V I  H+    H
Sbjct: 117 PEVSIQIITGTWKQLLVDISQHKLDGAIVAGNIEFPMLNKLSIYQEDMVLIASHSLGEIH 176

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
               C+E L  +E+    + T G      +E++  L  +  PI         + SY +I+
Sbjct: 177 ----CQEDLIGKEI---FMWTEGCPYRAALEEWLKLKNISLPI-------TSITSYATII 222

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRI 258
                GSG+AL+P  I +   NL  I
Sbjct: 223 GCVSAGSGVALVPKSIYEQYKNLAHI 248


>gi|170737686|ref|YP_001778946.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819874|gb|ACA94456.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 301

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 97/194 (50%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDRLDGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +  GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALAELEAAEADLDCGRHEARGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDLVEEGIDLAVRIGPLADSTSLAVRRLGTQYGSLGAAPSYLARHGTP 180

Query: 181 LSIQELDKHNLITF 194
            S+ +L  H  I +
Sbjct: 181 QSLDDLKNHRTIAY 194


>gi|167835268|ref|ZP_02462151.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 300

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 142/301 (47%), Gaps = 13/301 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + ++L   +  L        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQNELLAAREALTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P +      P 
Sbjct: 121 VLDVVFENRVEDLMRDEVDIAVRVMSEPPQ--NLVARDMGAVRYVACASPGFAATHGMPT 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSG 240
            + +L    +IT   ++ + +    +L      +  EP    L   ++L + Q  + G G
Sbjct: 179 GLDQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQAILAGLG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIFLKAR 295
           + ++PDY+V D+     ++  +     ++     Y  Y     +T     F +F+  +AR
Sbjct: 235 VGIVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFVLDEAR 294

Query: 296 D 296
           +
Sbjct: 295 N 295


>gi|161869360|ref|YP_001598527.1| LysR family transcriptional regulator [Neisseria meningitidis
           053442]
 gi|161594913|gb|ABX72573.1| lysR-family transcriptional regulator [Neisseria meningitidis
           053442]
          Length = 271

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 122/270 (45%), Gaps = 17/270 (6%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ S++SR +  LE ++G+ L  R  R L+LTE+G++  R    +  ++   + E+    
Sbjct: 1   MANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAETEMLAVH 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             P G LR+ + + +  +LL     +F   YP I++ L+     I++     D A+R  +
Sbjct: 61  EIPQGVLRVDSAMPMVLHLLAPLATKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGE 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            +  S L  R L        A+P YL     P S +EL  H  + F +  P  +   N  
Sbjct: 121 -LDDSGLRARHLFDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTE--PGSL---NTW 174

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGSGIALLPDYIVKDN-------PNLVRIME 260
           A +D      +IS     S   I++  C+ G GIA L D++V ++       P L     
Sbjct: 175 AVLDAQGNPYKISPHFTASSGEILRSLCLSGCGIACLSDFLVDNDIAEGKLIPLLAEQTS 234

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D   P   VY  Y +   N  +L+ F +F+
Sbjct: 235 DKTHPFNAVY--YSDKAVNL-RLRVFLDFL 261


>gi|152983043|ref|YP_001352606.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151283120|gb|ABR91530.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 302

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 122/295 (41%), Gaps = 13/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SF+ AA +L+++ +++ +Q+ GLE  +G  LFYR   G +       
Sbjct: 8   NALRAFEASARHQSFSAAATELNVTPAAVGQQVRGLEEWLGTPLFYRSGTGTSRLMPTDT 67

Query: 66  LHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             R   ++    +   I L+        G L +  +       L   +  F   YP   +
Sbjct: 68  AQRALPDIRAGFDKLSIGLERLKQASTGGALTVTVSPAFAAKWLMPRIDRFHQAYPQTDL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L  + K +D      D  +R         L   KL    ++   +P YLK     +   
Sbjct: 128 RLDTNLKALDFLASGIDVGVRYGSG-DWPGLAAIKLADEEIYPVCSPSYLKRHGPFVDPA 186

Query: 185 ELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
            L  H LI   DL  +    F  W + +D   G P +     LQ+N+  +++Q  +   G
Sbjct: 187 ALAGHTLIH--DLSMQNHPGFQTWRSWLDA-AGFPSVQSERGLQINNSAAVLQAAIDNQG 243

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIF 291
           IAL    +++++     LVR+ E + +PS    Y  Y        ++ AFR ++ 
Sbjct: 244 IALGRSVMMREDLTVGRLVRLFETISSPSKLAYYIVYRPECAELPRVAAFREWLM 298


>gi|21244497|ref|NP_644079.1| LysR family transcriptional regulator [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21110166|gb|AAM38615.1| transcriptional regulator lysR family [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 287

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 83/171 (48%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +   V   GSF+ A   L   +S +SR+++ LE  +G++L  R  R ++LTE G
Sbjct: 3   DLNDFALLAAVVDHGSFSAAGRALGFPRSKVSRRVADLEQRLGVRLLQRSTRAVSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ +     +    +      + ++  PSG++ ++    +    L   L  FLL +PD+Q
Sbjct: 63  AEFYTHCKSITRSAQWALDVAERATQHPSGRIWVSCPTGVAHLFLAELLPRFLLTHPDVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
           + L L ++ ++   +  D AIR+R  +  S LI R          A+P ++
Sbjct: 123 VDLELTSRRVEPIAESIDVAIRVRSSLDDSGLILRSFGVSRQVLVASPGFV 173


>gi|16264912|ref|NP_437704.1| putative transcriptional regulator, lysR family protein
           [Sinorhizobium meliloti 1021]
 gi|15141051|emb|CAC49564.1| putative transcriptional regulator, lysR family protein
           [Sinorhizobium meliloti 1021]
          Length = 298

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 2/179 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +GSF+ AA  L  + S++S+ ++ LE ++G +LF R  R L LT+ G    
Sbjct: 11  LMAFVRTVEAGSFSAAARDLGTTPSAVSKGVARLEKKIGTRLFLRSTRALMLTQDGQLFF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L  ++ E   S + PSG+LRI+   ++   LL      F   YP++ I++ 
Sbjct: 71  DRVAPLLRDLGASE-EAIRSDIAPSGRLRISMPNEMAPLLLPRLFGSFAADYPNLHIEVG 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +D+  +  D A+R+        ++ R L  + M    +P +LK    P + + L
Sbjct: 130 LTDRFVDLIREDYDVALRVGNSAPGDYMV-RHLADLPMTIVGSPAFLKTWGNPATAEAL 187


>gi|148548281|ref|YP_001268383.1| DNA-binding transcriptional regulator DsdC [Pseudomonas putida F1]
 gi|148512339|gb|ABQ79199.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 312

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 6/178 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF V AR  SF+ AA++L L+ S++S +I+ LE E+ +KLF+R  R ++LTE G +L 
Sbjct: 19  LHVFLVAARHLSFSRAADELCLTASAVSHRINRLEDELALKLFHRMPRKVSLTEDGERLF 78

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V      +L     E   + +  +G+L +     + Q  L   L +F   YPDIQ+ + 
Sbjct: 79  AVMQRTMDELSEAVQERAHAEI--AGQLTLYVRPSVAQCWLVPRLAQFTARYPDIQLDIR 136

Query: 128 LDNKDIDI---SMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + N+ ID     +D   C      P +QS  L+  ++  +    YA  H L     PL
Sbjct: 137 VGNEGIDYRTRKIDLVLCYSDGHHPGLQSIHLMDERIAPVCSPRYAETHALTGDLHPL 194


>gi|121594859|ref|YP_986755.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120606939|gb|ABM42679.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 305

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 126/291 (43%), Gaps = 20/291 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  S + AAE+LHL+QS++SRQ+  LE ++G  LF R  + + LT+ G    
Sbjct: 13  LLAFEAAARHASISRAAEELHLTQSAVSRQVRQLEAQLGQALFTRVRQRVVLTDAGRLYA 72

Query: 68  RVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                V  +L   TQ  +  +     G L +A    LG   L   L  F  L+P++ + L
Sbjct: 73  ADVRAVLQQLGAATQKAM--ALADGGGLLHLAVLPTLGARWLVPRLPAFAALHPELTVNL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCREPLS 182
               +  D + +  D AI    P  + +    L+  ++V +   A    H ++    P  
Sbjct: 131 SARGEPFDFAQEPFDAAIHYGAPHWAGAVCDYLMHEEVVPVCSPALRTRHRIET---PAD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L   +  T      + M   +W      P  +  +   +   +  I Q  + G G+A
Sbjct: 188 VAGLTLLHQTT------RPMLWADWFEQEGVPAPQ-ALRGPRFEQFAMIAQAAISGLGVA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP +++++   +  LV +   V+T S   Y   P A   +  +KA R ++
Sbjct: 241 LLPRFLMEEELASGALVELPGGVLTSSDAYYLVVPLARAESAGVKAIRAWL 291


>gi|167837659|ref|ZP_02464542.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 326

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 29/302 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  ++ +  +P G LR+A +  L    +   +  +   YP +++QL 
Sbjct: 67  DGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLT 126

Query: 128 LDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L    +D I   Y    +   +   + +LI   L+   +   AAP Y++    P    +L
Sbjct: 127 LTEGPLDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAPHRPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIA 242
            +H  I     +P       W   VD P     +  LQ    VNS   +    + G+GI+
Sbjct: 187 VRHACIA----LPAGQHSSTW-RFVD-PDHFTHVVSLQPVYTVNSTSMVRAATLAGTGIS 240

Query: 243 LLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP+  + D   +  LVRI+ D  +  P   +   YP             N  FL AR  
Sbjct: 241 VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYP-------------NRQFLPARTR 287

Query: 298 KF 299
            F
Sbjct: 288 SF 289


>gi|167576728|ref|ZP_02369602.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|257141480|ref|ZP_05589742.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 297

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 121/285 (42%), Gaps = 12/285 (4%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G+KL+  + E
Sbjct: 2   AIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAGNKLYSASQE 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
               L      ++    + +G LR+A         L      F+  +P I+++++ ++ +
Sbjct: 62  FVSGLYDVIGSIRRLRHESTGLLRVAAPSGFSTAHLSSIAATFIHQHPQIELEIVCNDDE 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           ID+  +  D A     P +      + L        A+P Y +    P    +L   + I
Sbjct: 122 IDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQMLVASPEYSRKHAVPRHPDDLPGSHWI 180

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252
             G L       ++      R +       L+V S L   Q  + G+GI+  PDY+V ++
Sbjct: 181 GHGGL---ANLSYSVFGNEGRSVRVQTSGRLKVKSVLLAHQMALAGAGISAFPDYLVAED 237

Query: 253 ---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                L R++     P   +Y     A + + +  + R  +FL A
Sbjct: 238 LREGRLHRLLPTWTMPKGGIY-----AFRTSPRQASVRERLFLSA 277


>gi|312171072|emb|CBX79331.1| HTH-type transcriptional activator ampR [Erwinia amylovora ATCC
           BAA-2158]
          Length = 297

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 29/293 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT A+ +L+++ ++IS+Q+  LE  +  +LF R +RGL LT +G  
Sbjct: 8   NSLRAFEAAARLLSFTKASRELNVTHAAISQQVKALEQHLKCQLFIRISRGLMLTAEGES 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V +E + ++  T     +  ++   K+ +  T  +G   L  +L++F  L+P I + 
Sbjct: 68  LLPVLNESFDRIANTLDRFADGQMREKMKIGVVGTFAIG--WLLAHLQDFRRLHPHIDLL 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS--- 182
           L   N  +D   +  D AIR        +                 H+L  C  PLS   
Sbjct: 126 LSTHNNHVDSLAEGLDYAIRYGNGAWHGT---------------ESHFL--CDAPLSPLC 168

Query: 183 -----IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                 Q     NL +F  L     ++++ W +     +  P    +  +S L++++   
Sbjct: 169 CPALGAQLHAPGNLHSFTLLRSYRRDEWSTWFSAAGERLPSPSQHIMMFDSSLTMLEAAQ 228

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G+GIAL P  +     N  RI++   + S ++   +   L++  +  A R+F
Sbjct: 229 AGAGIALAPPTMFSHLLNSGRIVQP-FSLSISLGGYWLTRLQSRTETAAMRDF 280


>gi|188990884|ref|YP_001902894.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732644|emb|CAP50838.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 306

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 135/289 (46%), Gaps = 13/289 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GS T AA  L LS +  S+++  LE ++G++L +R  R +  T +G +L   
Sbjct: 9   LFLRVLDLGSITAAAHSLDLSVAVASQRLKRLERDLGVRLLHRTTRRMHPTAEGQQLAAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L+    +L+ES+    G LR+  +   GQ  +   L EF   +P ++I   L 
Sbjct: 69  GRVLVDDLDALTDDLRESAQDVGGTLRVTLSASFGQQYISPLLPEFQARHPRLRISAHLS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+     D AIR+  P++ S L+ R++        A+P YL+    P + +EL +H
Sbjct: 129 DDLVDLVKQGFDLAIRI-GPLEDSGLVARRIAPNRRTLSASPAYLQRHGTPRTPEELAQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVL-GSGIALLP 245
             +    L+ +      W  T+  P G     R+     +++  +M+  V+ G GIA+  
Sbjct: 188 AGVL---LMGRDGRQDVW--TLQTPEGGQVRVRMQSRFESNFGELMRDAVIAGQGIAVHS 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + + ++     LV +M D   P+  +    P       +++AF +F+ 
Sbjct: 243 YWHIAEDLRAGRLVEVMPDYPPPTSQISAVMPARQLQPPRVRAFVDFLL 291


>gi|153938904|ref|YP_001390009.1| LysR family transcriptional regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934800|gb|ABS40298.1| transcriptional regulator, LysR family [Clostridium botulinum F
           str. Langeland]
 gi|295318095|gb|ADF98472.1| transcriptional regulator, LysR family [Clostridium botulinum F
           str. 230613]
          Length = 291

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 139/298 (46%), Gaps = 26/298 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D  RVF  V +  SF+ AA++L+++Q ++S+ I  LE E+ I+LF R  +G+ LT +G 
Sbjct: 5   LDLYRVFGCVGKCKSFSKAAKELYMTQPAVSQSIMQLEKELDIRLFTRTPKGVILTNEGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    +     +E  + ++ +S     G L+I       +  L   L++F + YP++++
Sbjct: 65  ILFEYVTSAISLIEAGEKKMSDSKNLMIGDLKIGVGDTTSKYFLLSYLEKFHIKYPNVKL 124

Query: 125 QLILDNKDIDI-------SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           + IL+   +++        +D A C +    PI+ S+L  +K + I         + K  
Sbjct: 125 K-ILNGTTVELCNLVKTGDIDLAICNL----PIEDSALEFKKCMEIQDIFVCGERFNKTI 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            EPLS  E+ K  LI             N+L +    I  P I   ++ ++  ++Q+  +
Sbjct: 180 SEPLSFVEISKMPLILLDGKSNSRQYVENYLLSKGVNIS-PEI---ELGAHDLLLQFAKI 235

Query: 238 GSGIALLP-----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GIA +      +Y+ K+    V+  E +  P   + FCY   LK+     A R F+
Sbjct: 236 NLGIACVVKEFSLEYLEKEILFEVKTKEPI--PKRNIGFCY---LKSVSLSPAARTFL 288


>gi|118477828|ref|YP_894979.1| LysR family transcriptional regulator [Bacillus thuringiensis str.
           Al Hakam]
 gi|196043394|ref|ZP_03110632.1| transcriptional regulator, LysR family [Bacillus cereus 03BB108]
 gi|225864395|ref|YP_002749773.1| transcriptional regulator, LysR family [Bacillus cereus 03BB102]
 gi|118417053|gb|ABK85472.1| transcriptional regulator, LysR family [Bacillus thuringiensis str.
           Al Hakam]
 gi|196025703|gb|EDX64372.1| transcriptional regulator, LysR family [Bacillus cereus 03BB108]
 gi|225789642|gb|ACO29859.1| transcriptional regulator, LysR family [Bacillus cereus 03BB102]
          Length = 300

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIKLSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISTPLYKSELIIVVPTGHQLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
              +SI EL  + LI         +LI    + FN+     +PI       L++++  S+
Sbjct: 181 HNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|237730847|ref|ZP_04561328.1| transcriptional activator [Citrobacter sp. 30_2]
 gi|226906386|gb|EEH92304.1| transcriptional activator [Citrobacter sp. 30_2]
          Length = 303

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 107/263 (40%), Gaps = 32/263 (12%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W     F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE 
Sbjct: 9   FAW-----FVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEETLGVRLIQRTTRQFNVTEV 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + +  Q  +    V+P G +++   + L    +   L  F+  YPD+
Sbjct: 64  GQTFYEHCKAMLVEAQAAQDAIAALQVEPRGVVKLTCPVTLLHVHIGPMLARFMARYPDV 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +QL   N+ +D+  +  D AIR+R +P + S L+ R L       YA+P  ++      
Sbjct: 124 SVQLEATNRRVDVVGEGLDVAIRVRPRPFEDSDLVMRVLADRGHRLYASPQLIEQMGTLH 183

Query: 182 SIQELDK------------HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229
           S  EL +            H    FG    +    F            PR+        L
Sbjct: 184 SPAELTRWPGLSLATGKHVHRWELFGPQGARAEVHFT-----------PRMIT---TDML 229

Query: 230 SIMQYCVLGSGIALLPDYIVKDN 252
           ++ +  V G G+  LP  +VKD 
Sbjct: 230 ALREAAVAGVGVVQLPQLMVKDQ 252


>gi|254224678|ref|ZP_04918294.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125622741|gb|EAZ51059.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 307

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 138/306 (45%), Gaps = 37/306 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT  G +  
Sbjct: 18  MRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTAAGEEAL 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P +   ++
Sbjct: 78  QRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQVHFDVL 137

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185
             ++   +  +  D A+R  ++P    +LI R+L+ + M   A   YL     P+ + Q+
Sbjct: 138 ASDRFSQLVDERVDIALRFTQQP--DENLIARRLLEVGMVVCATEEYLAQ-HAPIGLPQD 194

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY-CVLGS 239
           L  HN +        D + K  E F+ L   +    +    C    ++  +++  C LG+
Sbjct: 195 LAHHNCLVHISGNKWDFV-KNNEQFSVLVNGNIRANDMGTLCRAALNHKGVIRLPCDLGN 253

Query: 240 GI-------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +       ALLPDY +               PS +++  Y   L  + +    R FI  
Sbjct: 254 PLLQAGQLQALLPDYYL---------------PSSSIWAVY---LSRSYQTPLVRQFIDF 295

Query: 293 KARDWK 298
            A  W+
Sbjct: 296 LAERWQ 301


>gi|330820804|ref|YP_004349666.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327372799|gb|AEA64154.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 307

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 137/290 (47%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F +V R GS + AA +L ++  S+S+++  +E  +G++L  R  R +++T +G    
Sbjct: 7   LALFELVVRQGSLSAAARELGVTPPSVSKRLKQIELRLGVRLLNRTTRQISVTTEGELYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  +L   +  +  S   P+G LR+  +   G+  +   + EF+  +P ++IQL 
Sbjct: 67  NNGSRILAELAELEQLVSRSRAAPAGLLRVNASFGFGRTWVAAAISEFVARHPSMEIQLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ + +     D  IR    +  + +  R+L+       AAP YL     P + +EL 
Sbjct: 127 LTDRPLSLQEQAFDVGIRF-GDVPEARINARRLLRNRRIVCAAPAYLARHGTPRTPRELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
           +H  +   +         +W  T  R   E  +     L  N   +++++ + G G+ + 
Sbjct: 186 QHPCLVLRE---NDSAYGSWHFT--RGSQEETVKVRGPLSSNDGAAVLKWALDGHGVTIR 240

Query: 245 P----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                D ++++  +L+ ++ D   P+  +Y  Y E  + + +L+ F +F+
Sbjct: 241 SQWEIDALLREG-SLMPLLADWSLPNADIYAVYLERNQLSARLRTFIDFL 289


>gi|239630938|ref|ZP_04673969.1| fhu operon transcription regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065260|ref|YP_003787283.1| fhu operon transcription regulator [Lactobacillus casei str. Zhang]
 gi|239527221|gb|EEQ66222.1| fhu operon transcription regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300437667|gb|ADK17433.1| fhu operon transcription regulator [Lactobacillus casei str. Zhang]
          Length = 288

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 19/241 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA +G  T AA+QLH++Q  +S Q+  LE E+G++LF R +RG+ LT  G +     
Sbjct: 9   FLAVAEAGQMTAAAKQLHMAQPPLSYQLKALEDELGVRLFERGSRGVRLTGSGQQFMTYA 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            ++   +   +   + S     G L +  T   G  L +  L+ F   YP ++  L  DN
Sbjct: 69  QQIVETVAAAENAARRSGEGEIGTLALGLTSSAGDVLPKQKLQAFNRRYPQVEFALYEDN 128

Query: 131 K--DID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               +D +  +  D AI +R P     L   +L + HM A AA    +     L+I +L 
Sbjct: 129 TYGILDKLRRNILDLAI-VRTPFNDDGLASCRLSSDHMIAVAAAS--QPLPATLTIPDLK 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +  LI    F  L      ++            P I+ L  +   + + +  +G G+AL+
Sbjct: 186 QQPLIVYRRFSSLFKTTFAEYGI---------TPTIAVL-CDDARTALHWAQMGMGVALV 235

Query: 245 P 245
           P
Sbjct: 236 P 236


>gi|194289751|ref|YP_002005658.1| transcriptional regulator of glycine cleavage system operon, lysr
           family [Cupriavidus taiwanensis LMG 19424]
 gi|193223586|emb|CAQ69591.1| transcriptional regulator of glycine cleavage system operon, LysR
           family [Cupriavidus taiwanensis LMG 19424]
          Length = 308

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 13/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  SFT AAE+L ++ S++S QI  LE  +G++LF R A+ L LT  G+ 
Sbjct: 9   NPLRAFEVAARHLSFTRAAEELFVTPSAVSHQIKALEESLGVQLFIRDAKALVLTPAGTA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + +L      L  S  +P+ K+ +  T       L   +  F+  +PDI ++
Sbjct: 69  YLPSVQLAFKQLADATHRLH-SKDRPALKVNMPPT--FAVKWLIPRMDRFMKAHPDIDLK 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   N  ID   D  D AIR  +      L     + + +    +P  L++  +PL    
Sbjct: 126 VSTSNHRIDFERDDFDMAIRYGR-GDYPGLHCELCMAVEVIPVCSP-ALRHGPQPLETPS 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS---IMQYCVLGSGIA 242
             KH+ +   D     + + +W   ++   G   +   +  S+     ++   + G G+A
Sbjct: 184 DLKHHTLLHDDSTYTDVSNPDWAMWLEH-AGVTDVDASRGPSFWPSHLVINAALNGLGVA 242

Query: 243 LL-PDYIVKD--NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           L+  ++I +D     LVR+ E +  P  F+ +  +P+      ++++F ++I
Sbjct: 243 LVKKNWIEQDLAEGRLVRLFESIRLPVEFSYFVVFPKERLEDRRIRSFTDWI 294


>gi|255525425|ref|ZP_05392363.1| transcriptional regulator, LysR family [Clostridium carboxidivorans
           P7]
 gi|296187850|ref|ZP_06856244.1| LysR substrate binding domain protein [Clostridium carboxidivorans
           P7]
 gi|255510892|gb|EET87194.1| transcriptional regulator, LysR family [Clostridium carboxidivorans
           P7]
 gi|296047807|gb|EFG87247.1| LysR substrate binding domain protein [Clostridium carboxidivorans
           P7]
          Length = 292

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 123/263 (46%), Gaps = 27/263 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V    S T AAEQL  +QS+++ QI  LE E+G+KLF R+   + +T+ G KL 
Sbjct: 6   LYTFKRVCELNSITKAAEQLGYAQSTVTTQIKLLENELGVKLFERYGNMIHITDVGKKLL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             ++E++   E    E+ E     SG +RIA    +   +L   L +F+  YP + I++I
Sbjct: 66  EYSNEIFRITERFLDEMNEEK-DISGSIRIAAVDSVCMTILPNILNQFIQAYPKVNIKII 124

Query: 128 ----------LDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKL-VTIHMHAYAAPHYLK 175
                     L N   DI+       +   KP     SL+++K+ +  ++ A A    + 
Sbjct: 125 SGTANELKHFLTNGLADIAF-----VLDFNKPSDELHSLLEKKVELGFYIAADAPLKSMD 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            C E L  Q   +  L        K +E F      +R   EP I  ++ +S  +I++  
Sbjct: 180 VCLEDLKKQ---RFVLTESNCQYRKIVESF-----FERNGIEPDI-LMESSSTEAIIKIV 230

Query: 236 VLGSGIALLPDYIVKDNPNLVRI 258
             G GI  LP+ +V +NP + R+
Sbjct: 231 ANGLGITYLPELVVNENPRIKRL 253


>gi|163758432|ref|ZP_02165520.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162284721|gb|EDQ35004.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 305

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 23/244 (9%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR- 68
           VF    R  SFT AA +L ++Q+++S  I  LET++G  LF R  R + LTE G + H  
Sbjct: 16  VFEAAGRHLSFTRAARELGMTQAAVSYAIRALETQLGAMLFQRAHRAVHLTEAGRRFHAD 75

Query: 69  VTSEVYHKLETTQIELQESSVKPSGK---LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           VT  + H      I      +K  GK   + +A +       +   L+      PDI ++
Sbjct: 76  VTLGLGH------IRKSAEDIKNRGKPGIVTLAASTAFASFWMLPRLQRLRDDLPDIDLR 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQ----SSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++D+DI  +  +  IR  +P       S+LI  +++     A A   YL+   EP 
Sbjct: 130 IQTADRDLDIRTEAIELGIRGGRPEDWPDYDSALIAPEVI----EAVATSAYLEKHGEPD 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           SI +L +H LI   +      +   W   A V+          L +N Y+ ++Q  + G 
Sbjct: 186 SIDQLAQHRLIHLEEPFRSACDWQQWFKSAGVNATTAN---RGLAINDYVLVIQAVLEGQ 242

Query: 240 GIAL 243
           G+AL
Sbjct: 243 GVAL 246


>gi|76817385|ref|YP_335167.1| transcriptional regulator [Burkholderia pseudomallei 1710b]
 gi|76581858|gb|ABA51332.1| transcriptional regulator [Burkholderia pseudomallei 1710b]
          Length = 431

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 113 DNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQR 172

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    PD+ ++
Sbjct: 173 YFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 232

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  +
Sbjct: 233 LTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPTTPDD 292

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGSG 240
           L KH  +          E   W   ++R  G+  +  L     Q N   ++      G G
Sbjct: 293 LAKHVCLRLDTPASPGGE---W--RLERDDGDETVYALPPAPFQANVPDALSVAVRAGRG 347

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F
Sbjct: 348 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTF 396


>gi|15595645|ref|NP_249139.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|313111927|ref|ZP_07797716.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|9946307|gb|AAG03837.1|AE004482_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|310884218|gb|EFQ42812.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 302

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 128/305 (41%), Gaps = 39/305 (12%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AAE+L L+QS+I RQI+ LE  +G++LF R  RG+ LTE G    R  
Sbjct: 14  FESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGVKLTEAGLSYSRRV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL---- 126
           +     +E   + +     +  G + +A     G   L   LK F  L+P++ I L    
Sbjct: 74  AVRLDAVERDTLAVM--GHQGGGAIELAVVPTFGTQWLLPRLKRFQRLHPEVTINLTNRT 131

Query: 127 ---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +  + + D ++ + D           S  +   L+  +     +P  L   R  LS 
Sbjct: 132 RPFLFADTEFDAALYFGDA--------DWSGTVSHFLMRENPVPVCSPELLGG-RRTLSA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYCV 236
           ++      +    L+ +    + W          V   +  PR     +     + Q  +
Sbjct: 183 EQ------VAGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFSM-----LAQAAM 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+AL+P ++++D   +  L+  M+         Y   PE    +  L AFR+++  +
Sbjct: 232 HGMGVALIPPFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEE 291

Query: 294 ARDWK 298
           AR ++
Sbjct: 292 ARQYR 296


>gi|239832658|ref|ZP_04680987.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239824925|gb|EEQ96493.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 313

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 123/265 (46%), Gaps = 27/265 (10%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +R F  +A +G+ + AA  L++  ++I+R+++ LE+E  +KL  R  R   LTE G
Sbjct: 30  NWESVRYFVALADTGTLSGAARMLNVEHATIARRVAALESETSLKLVDRRGRRFLLTEDG 89

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDL------GQNLLQGNLKEFLL 117
            ++  +  ++  + +      +  +V+ +G   I+ T+ L          L   L     
Sbjct: 90  ERIAAIARKMQDEAQAIS---RLGAVRDTG---ISATVTLTAPPSYAVARLARPLAAISA 143

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I ++++ + +   ++   AD AIRL +P  +  L  R+L       YA+ HYL   
Sbjct: 144 QYPGIHMRVMGEARFSSLNRREADIAIRLTRPT-TGDLTIRRLGEEAFRPYASRHYLART 202

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCV 236
           R        ++ + I + + +    +    LA    RPI       L+ N+    +    
Sbjct: 203 RP-------EEWHFIAYDESLEDAPQQAYLLALAGTRPI------ALRANTLEMQLALVS 249

Query: 237 LGSGIALLPDYIVKDNPNLVRIMED 261
             +GIA+LPD++ +   +LV  + D
Sbjct: 250 ENAGIAMLPDFMAETQEHLVPALPD 274


>gi|227822710|ref|YP_002826682.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227341711|gb|ACP25929.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 302

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 11/255 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+F   +L+ F  VA  GS T AA+ L +SQSSI+  I  LET++G++LF RH RGL +T
Sbjct: 1   MAFTLRQLQYFVAVAEQGSVTRAAQNLSISQSSITEAIKELETDLGVELFDRHPRGLAIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +  R  +++   +   +    +S  +  GKL +  T  +   +L   L  +    P
Sbjct: 61  HNGHQFLRHATKILADVSDARRSFSDSREERGGKLNLGVTSLVAGYVLSDLLARYRRACP 120

Query: 121 DIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYLK 175
            +++  I DN    +  +     D A+ +   ++    +Q +++    +    P  H L 
Sbjct: 121 GVEVSAIEDNGSYLEHLLVGGELDVAVMVISNLRDRMALQAEILETSPYRLWLPIGHPLV 180

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           +  + +S++++ K  LI     + +  E+   L +    +G       +  S  ++    
Sbjct: 181 SA-DIISVEDIAKEPLIML--TVDEIEENTGKLLSA---LGARPHVAFRTRSVEAVRSLV 234

Query: 236 VLGSGIALLPDYIVK 250
             G+GIALLPD + +
Sbjct: 235 ATGAGIALLPDLVYR 249


>gi|222080879|ref|YP_002540242.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725558|gb|ACM28647.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 314

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 137/300 (45%), Gaps = 22/300 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  SFT AAE+L++SQ ++S+ I  LE   G+KLF R    L LT +G +L+
Sbjct: 14  LFVFEAAARRRSFTAAAEELNVSQPAVSKTIKLLEEATGLKLFRREHTRLELTAEGQRLY 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R T + +  L      L+  +   +  +R++ +    Q  L   LK+F + +PDI +++ 
Sbjct: 74  RETQQAFDHLHMVLTSLR--TKHSNDTVRVSFSTSFVQLWLLPRLKDFKVKHPDIALRIE 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-----RE--P 180
             ++D D  ++  D  I       S+ L   K   IH   +     +  C     RE  P
Sbjct: 132 ESSRD-DQDLNEEDIDI-------SARLGAGKWPGIHAWHFVTEEVIPVCNADYLREHGP 183

Query: 181 LSI-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++  +L  H L+ F +     +   +WL     P+       +  ++ LS ++  VLG 
Sbjct: 184 INVPADLLNHRLLHFEERHRVRLGWRDWLLHHSVPVARLAQDFVFTDA-LSSIEAAVLGQ 242

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIAL   ++V D+     LV  ++ V     ++Y   P           FR+++  +  D
Sbjct: 243 GIALGWKHLVHDHVQAGRLVYPLDAVHRSGQSIYLVMPAQRPAKHGAMLFRDWLLEQDAD 302


>gi|206577035|ref|YP_002236892.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288933846|ref|YP_003437905.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206566093|gb|ACI07869.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288888575|gb|ADC56893.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 295

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 33/301 (10%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  +GSFT AA  L  +++ +S  +  LE E+G+ L  R  R L LT+ G+  
Sbjct: 6   RVTMFIAVVDAGSFTLAAAALGQTKAVVSFNVRQLENELGVTLLLRSTRRLRLTDAGTLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +    E  Q E++ S    SG+LRI TT + G  ++   L  F   +P ++++ 
Sbjct: 66  YQRGVALLKAAENLQDEVRASHTGLSGELRITTTPEYGAQVIIPALAAFARRHPALRVRH 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +   D+  +  D AIRL   +  S     ++ +  +   A+P +L +          
Sbjct: 126 VSSSHHADLISERFDVAIRL-GTLADSRYRATRIASFAILPVASPAWLAS---------- 174

Query: 187 DKHNLITFGDLI-------PKCMEDFNWLATVDRPI-------GEPRISCLQVNSYLSIM 232
             H + T  DL         +      W    D+           PR S    +S  ++M
Sbjct: 175 --HPVQTLSDLAQADWIIHERLSAPLRWQLRTDQQTEVDFAIASAPRFSA---DSATALM 229

Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + + G GIALLP ++V +      LV ++ +   P   VY  YP+A     +++AF +F
Sbjct: 230 SFALAGCGIALLPAWLVAEKVAQRELVPLLSEYHFPQQGVYALYPDAQHMPTRVRAFIDF 289

Query: 290 I 290
           +
Sbjct: 290 L 290


>gi|269104251|ref|ZP_06156947.1| putative transcriptional regulator LysR family [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160891|gb|EEZ39388.1| putative transcriptional regulator LysR family [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 301

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 18/278 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  VAR  SF+ AA+QLH++QS++S Q+  LE  +G +LF R  R LTL+  G +  
Sbjct: 9   VQCFETVARLNSFSLAAQQLHITQSAVSHQVKQLEEYLGEELFIRQGRKLTLSSVGEQYF 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV + L+T     Q       GK+R+A    L    L   L+    L+P+I + L 
Sbjct: 69  ---DEVSNSLQTISQASQRLREGEDGKIRLALYSSLAVKWLIPRLENLRQLHPEIDLSLN 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +   + + S   ADC I    P    + ++  L   H++ + +    +  ++      L 
Sbjct: 126 MMADEPEFSDRVADCFITAYPP--KRNFVKEFLYDEHLYPFCSQQIWQQIKDKPLPDALW 183

Query: 188 KHNLITFGDLIPKCMEDFNW-----LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +HNL++   +        +W     L   + P     ++    +  L   +      GI 
Sbjct: 184 QHNLLSVSTIFLHGKPGQDWYEWCRLGGFELPA---EVTMSHFSHMLLAAEAARYHQGIT 240

Query: 243 LLPDYIVKDNPN---LVRI-MEDVITPSFTVYFCYPEA 276
            L D+   D      L+RI M D+ T   ++YF Y ++
Sbjct: 241 FLNDFFTTDQERQQYLIRIPMHDLPTGD-SLYFVYKKS 277


>gi|90416043|ref|ZP_01223976.1| transcriptional regulator, LysR family protein [marine gamma
           proteobacterium HTCC2207]
 gi|90332417|gb|EAS47614.1| transcriptional regulator, LysR family protein [marine gamma
           proteobacterium HTCC2207]
          Length = 287

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 76/124 (61%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L+ F  VA  GSF+ AA++L+L+QS+IS++I+ LE ++G KLF R AR ++LTE 
Sbjct: 1   MDNQNLKAFITVAELGSFSEAADRLYLTQSAISKRIAQLEQQIGKKLFDRIARQVSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+L      +  + ++    + + S + SG LR+A +  LG + L   LK+F   YP++
Sbjct: 61  GSELLPRAQRILQEYDSALQAINDLSGEASGTLRLAISHHLGLHRLPPVLKQFAQQYPNV 120

Query: 123 QIQL 126
            + +
Sbjct: 121 TLDI 124


>gi|254563116|ref|YP_003070211.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254270394|emb|CAX26392.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens DM4]
          Length = 302

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 21/303 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  VA +G F   A     S S +S  +  LET +G++LF R  R +  T
Sbjct: 1   MAMDLGDLAAFVSVAEAGGFREGARASGTSASGLSEAVRRLETRLGVRLFNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    +    ++E     +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGARLLERLTPALGEVEAALDVVNGFRDRPAGTLRLNVPVSAARLVLPRIVPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHYL 174
           DI++ ++ ++  +D+     D  IR  + ++   +       Q++  T      AAP YL
Sbjct: 121 DIRLDVVAEDSFVDVLAAGCDAGIRYDERLEQDMIAVPIGPRQQRFATA-----AAPAYL 175

Query: 175 KNCREPLSIQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
                P    EL  H  I      G  I    E    +  V+ P G P I  +   + L+
Sbjct: 176 DRHGHPQHPSELLDHACIGGRFASGATIAWEFERDGEVVRVN-PSG-PLIVRVGAATDLA 233

Query: 231 IMQYCVLGSG-IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +    V G G I L  D++    D+  L  ++E    P    +  YP        L+AF 
Sbjct: 234 V-DAAVAGVGIITLFEDWLQPHLDSGALEPVLEPWWQPFPGPFLYYPGRRYLPAPLRAFI 292

Query: 288 NFI 290
           +FI
Sbjct: 293 DFI 295


>gi|187918733|ref|YP_001887764.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717171|gb|ACD18394.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 292

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 131/292 (44%), Gaps = 16/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G  
Sbjct: 8   NALRAFESSARHLSFTRAAFELNVTQAAVSQQVRTLEERLGTALFKRLPRGLAMTDEGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V ++ + ++E    + +         + +  T  +G   L   LK F   +P ++++
Sbjct: 68  LRPVLTDAFDRIEAVLKQFEGGHFHEVLTVGVVGTFAVG--WLMPRLKSFRDAHPFVELR 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N  +D++ +  D AIR        SL  R L+   +     P   +   +P  +  
Sbjct: 126 LLTNNNLVDLATEGLDFAIRFGDGTWPGSLATR-LLDAPLALLCTPEIAERLTKPEDLA- 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALL 244
                    G+ + +     +W++        PR I     +S   +++  + G+GIAL 
Sbjct: 184 ---------GETLLRSYRTDDWMSWFSAAGIPPRPIRGPVFDSSRLMVEAAMQGAGIALA 234

Query: 245 PDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +     N  R++   DV   + + +  + +    T  +  F  +I  +A
Sbjct: 235 PALMFDHEINTGRLVRPFDVEVHAGSYWLTWLKGKPMTPAMLLFNQWIIKEA 286


>gi|150397387|ref|YP_001327854.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150028902|gb|ABR61019.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 302

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 124/256 (48%), Gaps = 13/256 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+F   +L+ F  VA  GS T AA+ L +SQSSI+  +  LE+++G++LF RH RGL++T
Sbjct: 1   MAFTLRQLQYFVAVAEQGSVTRAAQNLSISQSSITEAVKELESDLGVELFDRHPRGLSIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +  R  +++   +   +    +S  + SG+L +  T  +   +L   L  +    P
Sbjct: 61  HNGHQFLRHATKILADVSDARRSFSDSREERSGRLNLGVTSLVAGYVLSDLLARYRRACP 120

Query: 121 DIQIQLILDN----KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYL 174
            +++  I DN    + + I  +  D A+ +   ++    +Q +++    +    P  H L
Sbjct: 121 GVEVSAIEDNGSYLEHLLIGGEL-DVAVMVISNLRDRMALQAEILETSPYRLWLPIGHPL 179

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            +  + +S++++ +  LI     + +  E+   L T    +G       +  S  ++   
Sbjct: 180 VSA-DIISVEDIAREPLIML--TVDEIEENTGKLLTA---LGARPHVAFRTRSVEAVRSL 233

Query: 235 CVLGSGIALLPDYIVK 250
              G+GIALLPD + +
Sbjct: 234 VATGAGIALLPDLVYR 249


>gi|16263343|ref|NP_436136.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|307304349|ref|ZP_07584100.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307322394|ref|ZP_07601752.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|14524025|gb|AAK65548.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|306891954|gb|EFN22782.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306902551|gb|EFN33145.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 317

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 130/299 (43%), Gaps = 37/299 (12%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     +AR G+F  AA  L +S +++S  IS LE  +G++LF R  R ++LT+ G   
Sbjct: 24  ELEAVIAIARRGTFRAAAIDLGMSTTALSHTISRLEAALGVRLFNRTTRSVSLTDAGRLF 83

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  +     L      ++     PSG +RI       + ++   + +FL  YPD+ + +
Sbjct: 84  VQQVAPSLQDLYAALDSVRSQRETPSGTIRINAAPFAARAIISPLVLQFLRRYPDMNVDI 143

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSIQE 185
           + + K +DI  D  D  +R+   +  S +I   L     HA   +P Y +   +P+   +
Sbjct: 144 VTEGKMVDIVKDGFDLGVRVAG-LVPSDMIALSLGRPQRHAVVGSPKYFEQHGKPIVPPD 202

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVN-------SYLSIMQY 234
           L  H  I      G L       F W    D   GE     LQ++          SI++ 
Sbjct: 203 LLNHRCIRVRLPDGSL-------FRWRFEKD---GE----TLQIDVRGPITLDEASIVRT 248

Query: 235 CVLGS-GIA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            VL S G+       +LPD  +K    LVR++ED   P   +   YP     +  ++AF
Sbjct: 249 AVLESTGVGYTMEQEVLPD--IKAG-RLVRVLEDWTPPYPGLCLYYPGRRNLSAGIRAF 304


>gi|134292859|ref|YP_001116595.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136016|gb|ABO57130.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 299

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 131/292 (44%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLRVF  V  + SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRVFRTVVETRSFTRAADIHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + V  +L++ + +    + +P G LR+        N L   +  F   +P I++ 
Sbjct: 65  IYDRCAAVLDELDSLEAQALAHTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPKIRLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  I +   + S + I R +  I +   A P YL+    P +   
Sbjct: 125 VTLTERPVDLVGEGYDIGIVVPYMLTSETTIVRLVERIPVVIVATPAYLRTHPRPETPAA 184

Query: 186 LDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H  +     + +      D N + TV      P    +  NS +   +  +   GI 
Sbjct: 185 LAGHAFVPMSPSLRRPALSFRDGNDMVTV------PLSFDISSNSPVFNREMVMRDFGIG 238

Query: 243 LLPDYIVKD---NPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           ++P  +V+    +  LV+++E  D++     +   Y        K+KAF ++
Sbjct: 239 VVPRTLVEPELASGALVQLLEGADLVDAFVEIKLAYANRALLPAKVKAFIDY 290


>gi|327480755|gb|AEA84065.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 306

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF   A +GS + AA  L +S +  S+ +  LE  +G+KLF+R  R L+LTE G    
Sbjct: 8   MRVFVRAASAGSLSAAARHLDMSPAMASKHVDALERRLGVKLFHRSTRRLSLTEAGGNYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +  +    V+ +G LR+   +  G   +   + EF   +P ++++L 
Sbjct: 68  EACQRILPEIDEAEAGVASQRVEATGLLRMNVPLTFGTQFIAPLIPEFSRRHPAVKVELG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+     D A+R+ + ++ S L  R L    +   AAP YL     P S+ +L 
Sbjct: 128 LTDSQVDLLDGGWDMAVRIGR-LEDSPLQARGLADCPLLVCAAPSYLDQRGVPRSVADLG 186

Query: 188 KHNLITF 194
           +HN + +
Sbjct: 187 QHNCLGY 193


>gi|269961876|ref|ZP_06176233.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833454|gb|EEZ87556.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 295

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 131/271 (48%), Gaps = 10/271 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+VF  V   GS   A+E+L +  S++SR+I  LE  +G+ L +R  R + ++ +G +
Sbjct: 6   DDLQVFCTVVEEGSLKRASERLEIPHSTVSRRIEALENNLGLVLLHRTTREVKVSTRGEE 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++  S +   +  +     +S V   GKL ++  +  G + L   L +F   +PD+Q+ 
Sbjct: 66  LYQNCSALLGTIRQSIDFAVDSEVAFKGKLNVSMPVRAGIDFLGVWLIDFAAEHPDLQLD 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L N +  +  D  D A R+  P+  SS I   L  I   A A   Y++N +  LS   
Sbjct: 126 VALSNDNKHLIKDDIDLAFRV-GPLVDSSAIALHLWDIPYVACAHRDYVENHQ--LSELT 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSG--IA 242
           L    L +   +I +     NW+  V++   E  +S  Q  +   + + Y  + SG  + 
Sbjct: 183 LSIEQLESLPGVITRPA--MNWM-FVNKQFEEVAVSPQQGLTVDDLGLAYHAIQSGKYMG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +LP  +VKD  N+V +  + + P   V + Y
Sbjct: 240 MLPASMVKDQ-NIVTLQIENLEPRKRVMYAY 269


>gi|167835123|ref|ZP_02462006.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 293

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 117/260 (45%), Gaps = 14/260 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF+ A E+LH++  +ISRQI+  E  +G  +F RH + + LT++G +  
Sbjct: 11  LRAFEAAARHESFSAAGEELHVTHGAISRQIAAFEAWLGQPVFRRHGKRVKLTDEGRRYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  +     +L+E+    +  LRI          L   L  F    P+++++L 
Sbjct: 71  ATIEAAFDSIARATDQLRETGT--ARVLRINALPTFAMKWLLPRLSRFQREAPNVELKLS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186
             N  +  S+D  D AIR R P +  +    + +   +    +P  LK  R P+ S  +L
Sbjct: 129 TSNAPLG-SLDGFDVAIR-RGPGRWPNCTSGRFLDESVIPVCSPALLK--RTPIASADDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H L+   D  P    +  W A    P+ G  + S    + +   +Q  V G G+AL P
Sbjct: 185 ARHVLL-HSDTRPDAWRE--WFAAAGAPMKGRKKQS---FDHFYLALQAAVDGLGVALGP 238

Query: 246 DYIVKDNPNLVRIMEDVITP 265
             ++ D     R++  +  P
Sbjct: 239 LPLIADELASGRLVTPLPGP 258


>gi|153011305|ref|YP_001372519.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151563193|gb|ABS16690.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 309

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 130/293 (44%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +R +  V   G F+ A+ +L + +S +SR+I+ LE ++G++L  R  R   +T+ G
Sbjct: 8   DLNDMRFYVEVVEQGGFSAASRKLDMPRSRLSRRIALLEDDLGVRLIQRTTRQFAVTDIG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R    +  + +     +     +P G +R++    +    +   +  F+  YP ++
Sbjct: 68  QEFYRHCLAMMVEADAALDVIDRMRTEPQGTVRVSCPASVIYFQVGEMIARFMARYPKVK 127

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S L+ RKL        A+P ++K     + 
Sbjct: 128 IHLESTNRRVDVIREGFDLAIRVRFPPLEDSDLVIRKLAESEQRLVASPVFVKEGCNAVP 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
              +D   L  +G         F W L   +    E P    L     +++    + G G
Sbjct: 188 ADLVDMPGL-AWG----SSHNSFEWNLLGPNGTTAEIPYQPLLITEDMVALRLAALQGIG 242

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   P  +V+D+     LV ++ D    S  ++  +P        ++A  +F+
Sbjct: 243 VCQFPTMVVRDDIKTGRLVDLLPDWAPRSGIIHAAFPSRRGLLPSVRALLDFL 295


>gi|90023069|ref|YP_528896.1| LysR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952669|gb|ABD82684.1| transcriptional regulator, LysR family [Saccharophagus degradans
           2-40]
          Length = 312

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 130/300 (43%), Gaps = 17/300 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA+  SF+ AAE L +S  + +R ++ LE  + +KLF R  R + LTE G +  
Sbjct: 17  IKVFIEVAKLHSFSSAAEVLGMSAPAATRAVAELEGRLRVKLFNRTTRLVRLTESGRRFF 76

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE  +         P+G L +   +  GQ  +   + E+L LY  + +  +
Sbjct: 77  NSAVAIIEDLEEAEAAAAGLYATPAGTLTVTAPVVFGQKHVIPIVNEYLGLYSGVSVNAM 136

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++   +  +  D AIR+   ++ S+L   ++ ++      +P Y K    P   ++L 
Sbjct: 137 FYDRITSLLEEELDVAIRIGH-LKDSNLYATQVGSVRRIVCGSPRYFKKRGVPKCPEDLH 195

Query: 188 KHNLITFGDLIPKCMED-----FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H+LI      PK  E      F      +R    PR++C Q  + L   +  V G GI 
Sbjct: 196 EHDLI-----FPKTYEGTTTWQFRNGDKTERLKLNPRLTCNQNGAAL---RAAVEGHGIT 247

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            L  Y V    +  NL  I+         V   + E  +   K+++F +    + R+  F
Sbjct: 248 RLMSYQVGEELEKGNLESILTGYEEAPLPVNVVHLEGRRANAKVRSFIDLAVERLRENPF 307


>gi|330901281|gb|EGH32700.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 307

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 98/197 (49%), Gaps = 4/197 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + +S +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDMSAAVASAALKRIERQLGTRLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  L  S  +  G L+++   DLG+N+L   L EF   +P + +
Sbjct: 64  GFLEYARAALGSLEEGRRLLASSQDRCEGVLQLSAPSDLGRNVLLPWLDEFQQQHPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSL+   ++  +     AAP YL+   EP  +
Sbjct: 124 RLLLGDRIADLFPQPVDVALRYGEP-EDSSLVALPVLPDNRRVLCAAPSYLQRHGEPHQV 182

Query: 184 QELDKHN--LITFGDLI 198
           ++L +HN  L   GD +
Sbjct: 183 EQLAQHNCLLYMLGDRV 199


>gi|293604098|ref|ZP_06686507.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292817493|gb|EFF76565.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 315

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 7/296 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA++ SF+ AA  L L +S++SR+++ LE  VG+ L  R  R + LT  G   
Sbjct: 13  SMQLFAEVAKARSFSRAALVLGLPKSTLSRRVAQLERSVGLSLLNRSTRKVELTGAGELY 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  + E    ELQ  +  PSG LR+        +++      F   +P++   +
Sbjct: 73  LERCLRIVQEAEVAHEELQALTATPSGLLRVNMPATFATDVMADIFMGFARRHPEVAFHV 132

Query: 127 ILDN-KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L + +  D   D  D  I++ + +  SS I R L  +H+H YA+  YL     P    E
Sbjct: 133 NLASLEHADRVADPCDLTIKIGQ-LPDSSRIARCLGALHVHLYASSAYLAAHGAPAHPAE 191

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I F          +  +   ++    P  S   VN      +  +LG+GIA L 
Sbjct: 192 LAVHECIGFRAQANGAPTRWPLVRGTEQFSVAPG-SRFSVNEVGMARRLAMLGAGIAALG 250

Query: 246 --DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF-LKARDWK 298
                ++ + NL R++ D     F V+    EA     + +AF +++    A+ W+
Sbjct: 251 GDQTELEQSGNLRRVLPDWTVGPFPVHVVT-EARLLPARARAFVDYLIECLAQGWQ 305


>gi|209518383|ref|ZP_03267207.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501202|gb|EEA01234.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 293

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 116/257 (45%), Gaps = 34/257 (13%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  G F  A   L   ++++SR ++ LE E+G++L  R +R + LTE G  LH  T
Sbjct: 9   FNAVATHGGFGPAGRALDRPKATLSRHVAELEDELGVRLIERGSRRMRLTEDGIALHERT 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +LE     +   +    G+LRI+  I     +L      F L YP ++++++ ++
Sbjct: 69  RGLLAELEEAGDAVASRAPVARGRLRISAPIVFAHVVLCRIAARFALAYPQVEVEIVAED 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D   D  D  IR+  P +   L+ R+++       A P         +S+  + K +
Sbjct: 129 RVVDPVEDGYDLVIRVDPP-RDDLLVGRRILDDERWLVATPA--------VSVPAMRKQD 179

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIG---------------EPRISCLQVNSYLSIMQYC 235
           +  F   +P  +       +   P G               EP +  L+++S L + +  
Sbjct: 180 VSPFP--VPAVL-------SAAAPSGAIWSVRTKSKGTKTFEP-MPVLRLSSLLMVREAV 229

Query: 236 VLGSGIALLPDYIVKDN 252
           + G G A+LP  +V+++
Sbjct: 230 LAGVGPAMLPRLLVEED 246


>gi|85703118|ref|ZP_01034222.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
 gi|85672046|gb|EAQ26903.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
          Length = 303

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 126/294 (42%), Gaps = 15/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    + R GS T AA +L  +QS++SRQ+  LE ++G+ L  R  RG+ LT + +   
Sbjct: 14  LRALEALDRLGSATAAAAELSQTQSAVSRQLKTLEDQLGVGLIVRQGRGIHLTPEAADYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++    ++L  + V   G L +A     G   L   L +F  L+P++ I L 
Sbjct: 74  DKIRGALQQIAQASVKLTVNPV--GGSLSLAILPTFGMRWLVPRLADFARLHPEVTINLS 131

Query: 128 LDNKDIDISMDYADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              K  +   +  D AI       + + +L   +L T  + A A P +L       S + 
Sbjct: 132 TRLKPFNFVTEPFDAAIHFGHSDWLGTEAL---RLRTERVVAVATPEFLARQGPIKSAES 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +  L+   +  P       W     + I   R++    + + +I Q  + G G+ALLP
Sbjct: 189 LLRLPLLQI-ETRPSAWP--TWFEA--QGISGARVTGTIYDQFSTITQAALHGLGVALLP 243

Query: 246 DYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           DY+ + +    R+     D    S   Y  +P        L+ FR+++  +A D
Sbjct: 244 DYLAEQDLATGRLAIAWGDKTLISGAYYLVWPVQNGRDPALRKFRDWLAGQAED 297


>gi|307300824|ref|ZP_07580599.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306904358|gb|EFN34943.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 296

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 6/195 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +L     VAR G F  AA QL +S S++S  I  LE  + ++LF R  R + L+
Sbjct: 1   MRASLSELEAVAAVARHGGFRAAARQLGMSSSALSHAIIALEERLAVRLFNRTTRSVVLS 60

Query: 61  EQGSKLHRVTSEVYHKLET--TQIE-LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             G +     SE+   L+T    IE + E S +PSG+LR+       + LL+  L E+  
Sbjct: 61  AAGEQF---LSEIAPALQTIDNAIEHIGEHSSRPSGRLRLNMAPGAARMLLEPLLLEYGR 117

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP+++++++ ++  +D+     D  +RL + I    +      T+      +P Y K  
Sbjct: 118 RYPEVELEVVTEDALVDVIGKGFDAGVRLAEMISPDMVAIPITPTLRSLVVGSPEYFKGR 177

Query: 178 REPLSIQELDKHNLI 192
            +P+   +L +H  I
Sbjct: 178 SKPIVPLDLVQHRCI 192


>gi|253574741|ref|ZP_04852081.1| LysR family transcriptional regulator [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251845787|gb|EES73795.1| LysR family transcriptional regulator [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 289

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 121/272 (44%), Gaps = 36/272 (13%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +LR+F  VAR G+ T AA +L   QS+++ +I  LETE+G  LFYRH RG+TLT  
Sbjct: 1   MDSAELRIFQAVARDGAITKAAARLGYVQSNVTARIKQLETELGTDLFYRHNRGITLTSS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++   L+     L  +  +PSG L I +T       +   L ++   YP +
Sbjct: 61  GKMLLNYADKIIGLLDEAASALSFTG-EPSGPLLIGSTQTTAAVRMPKLLSQYYEKYPKV 119

Query: 123 QIQLILDNKD------IDISMDYADCAIR------LRKPIQSSSLIQRKLVTIHMHAYAA 170
           ++ L+ D  D      +   +D A  + R       R P+        ++V I      +
Sbjct: 120 ELMLLTDMSDRLLEKVLQYELDVAFGSFRSTHDELTRLPV-----FDEEVVVI------S 168

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
           P  +++  E LS   L  +   TF +     +ED        +  G   ++ ++  +  +
Sbjct: 169 PPGIESLDEALSKPSLVYNRGCTFRE----QLEDMK------KAHGRTNVATMEFGTLEA 218

Query: 231 IMQYCVLGSGIALLPDYIV--KDNPNLVRIME 260
           I+     G GI+LLP  +   K     VRI E
Sbjct: 219 ILGGVSAGLGISLLPRTVAEQKAQEGAVRIHE 250


>gi|270264763|ref|ZP_06193028.1| putative transcriptional regulator, LysR family [Serratia odorifera
           4Rx13]
 gi|270041446|gb|EFA14545.1| putative transcriptional regulator, LysR family [Serratia odorifera
           4Rx13]
          Length = 307

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 73/125 (58%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA +GS + AA+ + +SQSS++  I  LET++G++LF RHA+G+ LT QG + 
Sbjct: 6   QIRHFIAVAETGSISAAAQAVFVSQSSLTLAIQQLETDIGVRLFDRHAKGMNLTHQGHQF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R +  +   ++  +  LQ  +   +GKL I  T  +    L   LK F   YP++ IQ+
Sbjct: 66  LRQSYLILATVDNAKRSLQLGTESLTGKLTIGVTSLVAGYFLVELLKRFKSAYPNVTIQV 125

Query: 127 ILDNK 131
           I D +
Sbjct: 126 IEDER 130


>gi|254506778|ref|ZP_05118918.1| transcriptional regulator [Vibrio parahaemolyticus 16]
 gi|219550359|gb|EED27344.1| transcriptional regulator [Vibrio parahaemolyticus 16]
          Length = 298

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 12/168 (7%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
           +V+R  S T AA +L+L+  ++S+Q+  +E  +G  +F RHARG+ LT+ G KL  V S 
Sbjct: 14  IVSRHASLTSAARELNLTTGAVSQQLQAIEERLGFSVFERHARGIRLTDLGQKL--VDSV 71

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL---- 128
            +H L   +   Q + V  S ++R+  T  L    L   L++F   YP+IQI        
Sbjct: 72  SHHLLAIEENVYQLTRVSDSQQIRLKLTPSLAFKWLVPRLEDFQKQYPEIQIHTFAEGAL 131

Query: 129 ---DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
              DN++ D+++DY     +L    ++  L++  LV +   +Y + H+
Sbjct: 132 VDSDNRNFDVAIDYGPIPYKL---TEAELLMEECLVPVMSPSYLSKHH 176


>gi|330002216|ref|ZP_08304242.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328537394|gb|EGF63642.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 301

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 22/258 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W     F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE 
Sbjct: 7   FAW-----FVQVVDHGGFAAAGRALDQPKSKLSRRIAQLEERLGVRLIQRTTRQFAVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +  + E  Q  ++    +P G +RI   + L    +   L  F+  YP +
Sbjct: 62  GQTFYQHCKAMLIEAEAAQQAVETLRAEPRGSVRITCPVTLLHVHIGPMLARFMARYPGV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + L   N+ +D+  +  D AIR+R +PI+ S L+ R L        A+P  +     P 
Sbjct: 122 TLHLEATNRRVDVVGEGIDVAIRVRPRPIEDSDLVMRVLADRGHRLVASPDLIFRLGRPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQY 234
           +  EL     ++ G           W  T   P G        PR+        L++ + 
Sbjct: 182 APSELSAWPGLSLG----ANKHQHKWQLT--GPGGARAEVYFTPRMVT---TDMLALREA 232

Query: 235 CVLGSGIALLPDYIVKDN 252
            + G G+  LP  +V+D 
Sbjct: 233 AMAGVGVVQLPLLMVRDQ 250


>gi|330821873|ref|YP_004350735.1| transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373868|gb|AEA65223.1| transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 315

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 2/190 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F   A  GSF++AA +  L    +S  I  LE E+ I+LF R  R L LT +G +
Sbjct: 5   DDLGLFVRTAALGSFSNAAREAGLLPGQVSAAIQRLERELDIRLFARSTRSLKLTAEGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   L   +  L        G LRI+   DLG+N+L   L EF   +P + ++
Sbjct: 65  YLPYAQEVLATLSEGRDRLHGERQVLRGSLRISAPSDLGRNVLPRWLGEFREAHPGLVLK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSIQ 184
           L L ++  D+  D  D A+R     +  S +   L   +     A+P YL     P S+ 
Sbjct: 125 LSLSDELADVFRDPVDVALRY-GLAEHGSFVALPLAEHNRRVLVASPDYLARHGRPASLD 183

Query: 185 ELDKHNLITF 194
           EL  H  + F
Sbjct: 184 ELGAHRCLLF 193


>gi|317404051|gb|EFV84508.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 315

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 129/286 (45%), Gaps = 14/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +  +GS + AA QL  +Q ++SR++  LE  +G++L  R    + LTE G + +
Sbjct: 18  IETFVRIVEAGSLSAAALQLGGTQPTVSRRLQLLERTLGVRLLQRSTHAIRLTEDGQRCY 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    ++ + +++ +  + +G LR+      GQN     L ++L  YP ++++ +
Sbjct: 78  ERARELLATWQSFENDVRGAGEELAGTLRVVAPHAFGQNQFVEPLAQYLRQYPRMRVEWL 137

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D   +  DCAI++   +Q  S++  KL  +     AAP  L     P    EL 
Sbjct: 138 LHDRVPDFIAENIDCAIKV-GAVQDPSVVALKLGEVPRSVMAAPSLLDGGPVPEHPSELA 196

Query: 188 KHNLIT----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +   +     + D +     +      V R   +PR+S    +   ++ +  +LG G+ +
Sbjct: 197 RLPWLALRTFYRDEVSLTHVETG---EVSRFEIQPRLST---DGLYALRRAALLGLGVGI 250

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              + ++D   +  LV++          VY  Y  +     +L+ F
Sbjct: 251 ASAWALRDELASGRLVQLAPAWRAAPLPVYLIYAPSRLQPARLRRF 296


>gi|323524927|ref|YP_004227080.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323381929|gb|ADX54020.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 318

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  VAR GSF  AA  LH++  ++ +QI  LE   G+ LF R  RG+ LT++G+ 
Sbjct: 18  NALRVFEAVARHGSFAEAATVLHVTHWAVGKQIRLLEDWFGVPLFERRPRGVVLTDEGAA 77

Query: 66  LHRVTSEVYHKLETTQIELQ--ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L    S+ + +L    + L+   S+ + SG +R+   +      L   L +F   YP++ 
Sbjct: 78  LLNDVSQAFERLGVAAVRLRHNRSTHRISGVVRVNVPMSFALCWLLPRLADFQARYPEVD 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV 161
           +++   ++ +    D  D  +R   P + + ++ R L+
Sbjct: 138 VRVSTTSRKLRYVGDAFDIGVR-SGPEEGAGVVSRPLM 174


>gi|260439035|ref|ZP_05792851.1| transcriptional regulator, LysR family [Butyrivibrio crossotus DSM
           2876]
 gi|292808489|gb|EFF67694.1| transcriptional regulator, LysR family [Butyrivibrio crossotus DSM
           2876]
          Length = 292

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 129/271 (47%), Gaps = 25/271 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +D  R+FY V + GSFT AAE L  SQ +I+R ++ LE+++G+++FYR  +G+ LT
Sbjct: 1   MNITYDYYRIFYYVVKFGSFTKAAEALDNSQPNITRAMNNLESQLGVQVFYRSRKGIKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L +  +  + ++   + EL+++    SG ++I  +      +L   L  +   +P
Sbjct: 61  REGEMLFKRVNIAFEQISLAEHELEQTKRMDSGSVKIGVSEIALHEVLLPVLATYRRDFP 120

Query: 121 DIQIQLI----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           ++ +Q+           L N ++++++      I     +   +L +     +    +  
Sbjct: 121 NVMVQITNESTPSAIKSLKNDEVELALVTTPININKNDSLSCENLCEFTEYPVAHKMFGI 180

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNS 227
           P       + +S++EL+K+ +I     + K      +   + R  G   +P +     + 
Sbjct: 181 PD-----NKEISLKELEKYPVI----FLSKGTATREYYEELFRKKGMDIKPNVIAATTDQ 231

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRI 258
            + +++    G GI  +P+ ++  N  ++++
Sbjct: 232 VMPMVKS---GLGIGFVPESMMGGNVTVIKL 259


>gi|237808735|ref|YP_002893175.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500996|gb|ACQ93589.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 297

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 126/280 (45%), Gaps = 22/280 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F VVA   SFT AA QL +S+S++S  +  LE  +GI+L  R  R ++ TE GSK
Sbjct: 7   NDLQAFVVVAHERSFTRAAAQLGVSRSALSHSMQALEARLGIRLLTRTTRSVSTTEAGSK 66

Query: 66  LHRVTSEVYHKLETTQIELQ---ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           L    + +  +L+  ++EL+   E   KP+G +RI         +L   L   L  Y DI
Sbjct: 67  L---LNAIAPRLDEIKLELEALSEMRDKPAGTVRITAHDHAVATILWPRLLPLLKEYSDI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  +D    DIS    D  +R    +    +  R    + M    AP Y      P +
Sbjct: 124 HIEFTVDYGLTDISARQFDAGVRFGDQVDKDMVAVRIGPDLRMAVAGAPEYFTGRSLPTT 183

Query: 183 IQELDKH-----NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             +L +H      L T G L     E       V R  G+   +    N++L ++Q  + 
Sbjct: 184 PHDLTEHRGINLRLPTHGGLYAWEFEKGGQQINV-RVNGQTTFN----NTFL-MLQAALD 237

Query: 238 GSGIALLPDYIVK---DNPNLVRIMED--VITPSFTVYFC 272
           G G+   P  IV+   D   L+ ++ED   + P + +Y+ 
Sbjct: 238 GVGLTFSPLDIVQPHLDAGRLIPVLEDWWPVFPGYHLYYT 277


>gi|70729878|ref|YP_259617.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344177|gb|AAY91783.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 320

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 73/142 (51%), Gaps = 7/142 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V ARS SFT AAE+L L+QS+ISR I  LE++ G +LF RH   L LT+ G +L 
Sbjct: 11  LRAFEVAARSSSFTRAAEELSLTQSAISRHIRTLESQFGCRLFERHGPRLVLTDVGQRLA 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R     +  +E   + L+      SG+LR+     L    L   L +     P + +QL 
Sbjct: 71  RELKAGFRIIEDACLPLRSG----SGQLRLKAPSTLTMRWLLRALDQLKHQQPSLAVQLA 126

Query: 128 ---LDNKDIDISMDYADCAIRL 146
              +D   +D   +  DCAI L
Sbjct: 127 SVWMDFDHVDFHAEPYDCAILL 148


>gi|70730476|ref|YP_260217.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344775|gb|AAY92381.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 302

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 1/174 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A   L + +S +SR+I+ LE  +  +L  R  R L+LT  G
Sbjct: 3   DLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLNARLLQRTTRQLSLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R    +  + E     +   + +P G+LR+++ + L   LL   +  FL  YP +Q
Sbjct: 63  ERYLRHCQAMLLEAEMADEAVASMASEPRGRLRVSSPVGLAHELLTPLVSSFLEKYPQVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           ++++L N+ +D+  +  D A+R+R+   +   L+ R+L        A P +L+ 
Sbjct: 123 LEMLLLNRRVDLINEGVDVALRVRELGDEDPLLVTRRLRRAQTAIVATPDFLRQ 176


>gi|229492574|ref|ZP_04386377.1| transcriptional regulator, LysR family [Rhodococcus erythropolis
           SK121]
 gi|229320560|gb|EEN86378.1| transcriptional regulator, LysR family [Rhodococcus erythropolis
           SK121]
          Length = 299

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 128/284 (45%), Gaps = 23/284 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + ++LR  + VA +GS   AA  LH++ S IS+Q++ LE EVG+ L     RG+ LTE 
Sbjct: 2   LNLERLRALHAVAENGSVAAAARTLHVTPSGISQQLNKLEREVGVPLLEPQGRGVRLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R T+EV   L   + E+     + +G++RI   +   + +L   + E    +P +
Sbjct: 62  GRILARRTAEVLSTLAQAEAEIASLQSEVTGRVRIGALVSPSRTVLPRAIAEIRHAHPQL 121

Query: 123 QIQL----------ILDNKDIDISM--DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I             L  +D+D+ +   ++   + L   +  + +       + + A  A
Sbjct: 122 EITFNEGESEELLPALIRRDLDVVVVDSWSTLPVELPDGLSFTPVYD----DVALLALPA 177

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYL 229
            H L   +  +++ EL +H   T+     +  +   +     R  G +PRI   +V  + 
Sbjct: 178 SHPLAENKV-VALSELSEHAWATWT----RGTDFHTFTVRTLRAQGFDPRIEY-EVAEFP 231

Query: 230 SIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           + +++   G  +AL+P       P  VR+++ V      +Y  +
Sbjct: 232 TQVEFVAQGLAVALIPRLARVVPPEGVRMLDTVPPLGRDIYLAW 275


>gi|237808544|ref|YP_002892984.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500805|gb|ACQ93398.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 301

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 33/285 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF V A S +F  AA++LH+S  S+SR I  LE   G  LF+R  R + +T+ G +L 
Sbjct: 8   LRVFVVAAESKTFRDAADKLHMSPQSVSRVIKMLEGTYGELLFHRSTRTIKITKFGEQL- 66

Query: 68  RVTSEVYHKLETTQI-----ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              S   H L+         + + +  + SG + I T   +G++ L   L +F   YP I
Sbjct: 67  --LSRASHALDVMNDVFLFGQQKNNHDELSGNITITTPDLIGRDFLYPLLSDFHKKYPKI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I +   N    +  +  D  IR+ K I+++  I RK+  +     A+P  + N   P  
Sbjct: 125 HIDIRASNSFSHLVDEQIDIGIRVGK-IKNNGFIVRKVNEVKFFLVASPEAINNFGTPRH 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL---------ATVDRPIGEPRISCLQVNSYLSIMQ 233
           + EL   NL     +     + + WL           V+    +P I  L +        
Sbjct: 184 LDEL--KNLPAIEAIDCNSGKGWPWLFADGVEIHPGNVNFRTDDPEIERLAI-------- 233

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
             + G G   + D+I  +   N +L+R++E+     + VY   P+
Sbjct: 234 --LDGFGFGQISDWIANNDIKNGHLIRLLEESEPEPWDVYVYRPQ 276


>gi|91779608|ref|YP_554816.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692268|gb|ABE35466.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 292

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 14/255 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G  
Sbjct: 8   NALRAFESSARHLSFTRAALELNVTQAAVSQQVRTLEERLGTALFKRLPRGLAMTDEGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V ++ + ++E    + +         + +  T  +G   L   LK F   +P ++++
Sbjct: 68  LRPVLTDAFDRIEAVLKQFEGGHFHEVLTVGVVGTFAVGW--LMPRLKSFRDAHPFVELR 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N  +D++ +  D AIR        SL  R L+   +     P       +P   ++
Sbjct: 126 LLTNNNLVDLATEGLDFAIRFGDGTWPGSLASR-LLDAPLALLCTPEIAARLSKP---ED 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L+       +  +  +W A    P   PR I     +S   +++  + G+GIAL 
Sbjct: 182 LANETLLRSY----RADDWMSWFAAAGIP---PRPIRGPVFDSSRLMVEAAMQGAGIALA 234

Query: 245 PDYIVKDNPNLVRIM 259
           P  +     N  R++
Sbjct: 235 PALMFDHEINTGRLV 249


>gi|84387254|ref|ZP_00990275.1| transcriptional regulator [Vibrio splendidus 12B01]
 gi|84377901|gb|EAP94763.1| transcriptional regulator [Vibrio splendidus 12B01]
          Length = 301

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 131/287 (45%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V AR  S++ AAE+L +SQ+++S++I  LE ++G KLF R  R + LT++G  L 
Sbjct: 11  LRYFEVAARLNSYSKAAEELFVSQAAVSQKIRQLEEQLGCKLFIRKGRVMALTQEGRTLF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S+ + ++      +Q   ++  G L +++        L   L +F + +P+I I+++
Sbjct: 71  KHVSDGFEEVIVGLNRIQSEPLQ--GVLVVSSPPSFASRWLLPRLWKFSVKHPEIPIKIL 128

Query: 128 LDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                 ++     D AIR  + +     L    L+   ++ + +P  L N  +  S ++L
Sbjct: 129 TGCDTPNLKHGEIDVAIRQGEDLCVEEGLSLEMLINEPIYPFCSPE-LANSLKFTSPEQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            K  LI F      C     W    +       +  ++V ++   +   + G G+ L  D
Sbjct: 188 LKCWLIQFNS---GCFPWEEWFKQANISTQGKAMQWMKVGTFDMGLTTVMAGHGVCLATD 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  D      LV+     +TP   V  C+  +     ++ AF +++
Sbjct: 245 SLAGDFIERGLLVKPFNIGMTPGVQVNLCFDPSSPRKERVTAFTHWL 291


>gi|260890139|ref|ZP_05901402.1| hypothetical protein GCWU000323_01301 [Leptotrichia hofstadii
           F0254]
 gi|260860162|gb|EEX74662.1| transcriptional regulatory protein, LYSR family [Leptotrichia
           hofstadii F0254]
          Length = 297

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 79/129 (61%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L++F+   +  SFT AA+ L +SQS++S QI  LET++GI+L  R+++   LT  G
Sbjct: 2   DVHHLKIFFEACKEKSFTKAAKNLFISQSAVSIQIKKLETKLGIQLIERNSKNFRLTFAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+R++ +V+ K+   + E+++ S    GK+ I  T ++G+ +L   + EF    P+I+
Sbjct: 62  KELYRMSKDVFDKILRVEKEMEKISHYGKGKICIGATHNIGEPVLPRIMVEFKKHNPEIE 121

Query: 124 IQLILDNKD 132
             L + N++
Sbjct: 122 FDLYIKNRE 130


>gi|319783672|ref|YP_004143148.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169560|gb|ADV13098.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 308

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 121/286 (42%), Gaps = 12/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L V   VAR G F  AA +L +S S++S  +  +E  +G  LF R  R ++LTE G  L 
Sbjct: 9   LPVIVAVARRGGFALAAAELGMSPSAVSHAVRIVEERIGQPLFARTTRSVSLTEAGKALV 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATT---IDLGQNLLQGNLKEFLLLYPDIQI 124
              +     +      ++    +PSG LRI  +   I L    +   + E    YP++ +
Sbjct: 69  ETAAPALQDIAERMDRIRSVKGRPSGLLRINASNIAIPLAVTPVVAAMAE---RYPEVTV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D   +DI  +  D  IRL + I    +  R      +   A+P Y+     P S+ 
Sbjct: 126 EVFADQGLVDIVGEGFDAGIRLGEMIAQDMVAVRLTPPFSVVIVASPAYIGRHGRPSSVA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  HN I +   + +    + W L    + I       + V   L+ +   + G G+A 
Sbjct: 186 DLANHNCIGY--RLVRSGALYRWDLIEDGKDIAMETRGSVVVTDSLAAIDLALAGVGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + + + + +     LV+++         ++  +P       KL+AF
Sbjct: 244 VFEPLARADLAAGRLVQVLPQTAIEEPGLFLYFPRRASMAPKLRAF 289


>gi|221210947|ref|ZP_03583927.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221169903|gb|EEE02370.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 306

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 87/187 (46%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR I+ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVELRSFTRAADMHGLARPVVSRAIAELEARFGGRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + V  +L+  + E Q  + +P G LR+        N     +  F   +P +++ 
Sbjct: 65  IYERCAAVLDELDALEAEAQTQTREPDGLLRLVAHTTAALNQFVPLIAGFKAAHPKVRVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  I     + S + I R +  I     A P YL+    P +  +
Sbjct: 125 VTLTERPVDLVGEGYDIGIVAPYMLSSDTTIVRLIARIPFVIVATPAYLRAHGRPATPAD 184

Query: 186 LDKHNLI 192
           L  H  +
Sbjct: 185 LVDHPFV 191


>gi|254463648|ref|ZP_05077059.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206684556|gb|EDZ45038.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 303

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 21/296 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    + R GS + AA++L L+Q ++SRQ+  LE ++G++L  R  + LTLT +     
Sbjct: 14  LRALEALDRLGSASAAADELALTQGAVSRQLQTLERQLGMELVQRDQKRLTLTTEAQDYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +  +++  + + LQ + +  +G L +A     G   L   L +F  L+PD+ I + 
Sbjct: 74  AEIRQALNQIVQSTLRLQAAPL--AGTLNLAILPAFGMRWLMPRLPDFARLHPDVTINMS 131

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYL--KNCREPLS 182
              +  + + +  D AI       P   + L++ +     +    AP  L  ++  EP  
Sbjct: 132 TRLEPFNFATEPFDAAIHFGNAEWPGTQALLLKHE----QLLPVCAPQLLNGRSVTEPDD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +L   ++ T      +     +W A +     +  +S    + + +I Q  + G G+A
Sbjct: 188 ILKLPLLHIQT------RTTAWRDWFARLGIAAND-GLSGTIYDQFATITQAALHGLGVA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+PDY+V+ +     LV +  +    S   Y  +PE       L  FR ++  +A+
Sbjct: 241 LMPDYLVEQDLATGRLVALHPEASETSGAYYLVWPERKSGAPALVKFREWLAGQAQ 296


>gi|254183416|ref|ZP_04890008.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184213949|gb|EDU10992.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 330

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 25/294 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 48  NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFALFMRHARGLTLTVEGEQ 107

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +      +   +  F   +PD+ +Q
Sbjct: 108 LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MRWVLPRIMRFQREHPDLHVQ 162

Query: 126 LILDNK-DIDISMDYADCA----IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    + D+D   +  D A    I     + +  L   +L  +      AP  L+    P
Sbjct: 163 MTTTWRHDVDFQSEPFDAAIVYGISPGPDVAAVPLFDERLTPV-----CAPDLLEG--RP 215

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
           L+ +++L  H L+  T      +   D+   A VD P   P    L + +  +   + V 
Sbjct: 216 LARVEDLACHTLLHPTRDHRDWRRWLDYAGAAGVD-PDRGPSFDSLDLATSAATQGFGVA 274

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LG       D+  +    L   ++ V       YF YPE++    K++ F  ++
Sbjct: 275 LGDLTLSEEDFAAR---RLAMPLDIVQRTGARYYFVYPESVAQQQKIQRFSAWL 325


>gi|118589114|ref|ZP_01546521.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118438443|gb|EAV45077.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 305

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 122/261 (46%), Gaps = 13/261 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD L++    AR  S + AA+ L +SQ  +SR++   E  +G +LF R   GL  T+ 
Sbjct: 1   MNWDDLKLVDAAARMRSLSGAAKALDISQPQLSRRLKSFEDRIGARLFDRTPTGLKPTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L  +  ++  K E     L + S      +R+A   ++   +L         L   +
Sbjct: 61  GLRLIPLAEDMRKKAEAAARILPDLSGSALKVVRVAVD-EVRARVLTDRFDLLTRLLDGV 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++LI  ++ ++      +  IR   P ++ +LI RK+  +    Y +  Y+ N   P +
Sbjct: 120 ELELISSHQHVNHQSRSIELQIRNCLP-ETDTLIARKIGELAYAVYGSADYVAN--HP-A 175

Query: 183 IQELDKHNLITFGDLIPKCM---EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            + +D++ L  +    P  +       WL T       P++  L+ N+  ++M     G+
Sbjct: 176 ARTVDRYKLCAWLGFAPDDLWYPSQMRWLET-----RLPQMPTLRSNTMTTLMNMTASGA 230

Query: 240 GIALLPDYIVKDNPNLVRIME 260
           G+ LLP ++  +N +LVR+ E
Sbjct: 231 GLCLLPVFMGDNNRDLVRLTE 251


>gi|28869642|ref|NP_792261.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971229|ref|ZP_03399346.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301383922|ref|ZP_07232340.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302063624|ref|ZP_07255165.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131033|ref|ZP_07257023.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852884|gb|AAO55956.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213923982|gb|EEB57560.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|331019492|gb|EGH99548.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 294

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 125/286 (43%), Gaps = 10/286 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L LT  G     
Sbjct: 8   RVFIAINERGSLIAAAETLDMSRAMVTRYLAQMERWAGARLLHRTTRKLGLTAPGQATLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G +RIA +  L Q +L   +  +L  YP   +   +
Sbjct: 68  RCQQLLELADAVPLAADTHVDEPRGMVRIACSQSLAQAVLAQAVTAYLQRYPGTSVDFQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   +LI R L        A+P YL     P   QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQL-DPNLIARPLGHCDSRVCASPAYLAAHGTPSRPQELSA 186

Query: 189 HNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           HN +T+     K + +F    T +  P+G      L  N  + +++    G+GIAL P +
Sbjct: 187 HNCLTY-SYFGKSLWEFTRQHTQLSVPVG----GNLSANDSVVLLEAAAAGAGIALQPVH 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V     +  L+ +M D    +  ++  Y      +  L+   +F+
Sbjct: 242 SVAPLIASGKLIALMPDYQPRALGIHAIYTSRHHQSATLRTLLDFL 287


>gi|224460044|gb|ACN43568.1| PnpR [Pseudomonas putida]
          Length = 309

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 128/287 (44%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +G+F  AA QL +++S IS +I  LE  +   LF+R  R + L++ G   +
Sbjct: 7   VEAFVRVAETGNFAKAALQLGVTRSVISHRIQQLEQFINAPLFHRSTRHVRLSDVGETYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S++     +    ++E   KP+GKLRI              + EF  LYPDI+I ++
Sbjct: 67  KECSDMVANFNSLTEHMRELRSKPTGKLRIQMLPGFAIGHFGRMMAEFNRLYPDIEIDVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D   +  D A ++  P+ S +LI+RKL ++      +P Y      P    +L 
Sbjct: 127 VNDRVVDPIEEGFDVAFQMFPPL-SETLIERKLFSVRRLFCMSPQYAAEFGVPQHPDDLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H +  +     +      W+ T     +       ++ NS   +  Y   G  I  LP 
Sbjct: 186 NHKIAMYAGYPSRN----RWVFTHGGEQLNLSLPGHMRSNSVHLLRDYAETGVCIVCLPT 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  D+     L+ ++ +    SF     +P   +   K++A   F+
Sbjct: 242 LVASDDLLAGRLIPVLPEYSLSSFNFSAVFPATQRRALKVRALIEFL 288


>gi|150396186|ref|YP_001326653.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027701|gb|ABR59818.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 314

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 136/296 (45%), Gaps = 21/296 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V ++  F+ AA  L++ +S +S+ ++ LE ++G++L  R  R L +TE G
Sbjct: 3   DLNDIALFAAVVKNNGFSAAARDLNVPKSKLSKHVARLEEQLGVRLLERSTRKLRMTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   +   + E+     +P+G +R+A  I     +L   L  F   YP ++
Sbjct: 63  RIFYEHAQGLLDGVAAAEAEIAAVRAEPTGVVRLACPIGF-TPMLADILPAFHRRYPGVR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ ID+  +  D A+R R  + + + LI RK   +     A+P  L    E ++
Sbjct: 122 LLITATNRRIDLIEERIDVALRARDQLDTDNQLIVRKFGEVRQRLAASPTLLARLGE-IT 180

Query: 183 IQELDKHNLITFGDLIPKCM-----EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             +L +   ++  +  P  +          +    RP+    I C   + +L + +  + 
Sbjct: 181 TDKLSQMPTLSMNEQNPNDIWRLVHATGGTIEIAHRPV----IGC---SDFLILERAAIE 233

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIALLPD+I +    +  LV ++ +  + +  V+  +P      G L A R  I
Sbjct: 234 GMGIALLPDHICERAFRSGALVPVLPEWTSGNVMVHLVFP---SRHGLLPATRALI 286


>gi|312962118|ref|ZP_07776613.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311283670|gb|EFQ62256.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 298

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 129/292 (44%), Gaps = 1/292 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++R+F  +++  S   AA  L++S  ++ R I+ LE+ +G+ L  R  RG+ LTE G+
Sbjct: 4   YHEMRMFRALSQRPSLASAARFLNVSGPTLVRAIARLESRLGVPLVVRSTRGVALTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 S +   +E  ++  +   V+  G LR+   +   + ++   L  ++ LYP +++
Sbjct: 64  AFMADCSRILDDIEQAEVCAKGLHVQAQGSLRVHLPLLFSRYVMAPMLTRYMDLYPQVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
                ++ +++  +  D A+ +   + SSSLI R +  +     A+P YL    EPL  +
Sbjct: 124 FAHYHDRVVNLHEEGVDVAVVMGH-LPSSSLIARPVGQVRSIVCASPAYLAIHGEPLVPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H LI       K    F   A        P + C  V + +S              
Sbjct: 183 DLLRHRLIAVQAHQDKVQWPFQVGAETCLFKARPHLGCSTVQAAISAAAQGAGLVRCESY 242

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P Y    +  L  ++    T S  V   Y E LK   ++++  +F+    R+
Sbjct: 243 PLYDYLQSGRLRPVLGAYETASLPVQVVYREGLKAPIRVRSLVDFLVEHLRE 294


>gi|257464526|ref|ZP_05628897.1| DNA-binding transcriptional activator GcvA [Actinobacillus minor
           202]
 gi|257450186|gb|EEV24229.1| DNA-binding transcriptional activator GcvA [Actinobacillus minor
           202]
          Length = 296

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 134/300 (44%), Gaps = 36/300 (12%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F   AR  +FT AAE L ++Q+++S QI  LE  +GIKLF+R  R L LTE G +
Sbjct: 9   NALKAFESAARHLNFTKAAEDLFVTQAAVSHQIKLLEEFLGIKLFHRKNRLLELTETGLQ 68

Query: 66  LHRVTSEVYHKL--ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  +  K+   T +++L+ S       L I+TT   G + L   L +F   +PDI+
Sbjct: 69  YFEEIKPLLDKIASATEKVKLKAS----RQILSISTTPSFGMHWLVPRLNDFHQRFPDIE 124

Query: 124 IQLI-------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           ++L        L  KD D+++ Y +           ++L   +LV   +   A+P YLK 
Sbjct: 125 VRLTTMPQDEGLFGKDTDVAIYYGNG--------NWNNLEAIELVKARIMLLASPDYLKE 176

Query: 177 --CREPLSIQELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
               EP   ++L   NLI          M D   L  V+  IG P  S   +      +Q
Sbjct: 177 NPITEP---KDLAGKNLIHVCSYTKWNQMVDHLNLGNVNTEIG-PMFSTTSMG-----IQ 227

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFI 290
               G G+ +    + +D      ++E   T  +     Y  YP  +  + K+K F N+I
Sbjct: 228 AAKHGQGVVVANRMLAQDEIEAGTVVEPFSTDVYDEKAFYVVYPPQMAQSEKVKHFVNWI 287


>gi|170740569|ref|YP_001769224.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194843|gb|ACA16790.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 305

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 18/298 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTEQGS 64
           + +R F   AR  +F  A ++L +S  +I++Q+  LE   G+ LF R  +RG+  T  G 
Sbjct: 10  NAVRAFEAAARHPTFQAAGDELGVSAGAIAQQVKALEAWAGMPLFRRLPSRGVVPTRAGL 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +        + L+   V   G L + TT       L   +  F    PD+ +
Sbjct: 70  RFAEEAGRLLDGFAAAALVLRRQGV--DGALTVNTTHSFASLWLIPRIGAFREANPDLDV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +N+ ID + D AD AIR  +   P     L+ R  V        +P  L++   PL
Sbjct: 128 RIVANNQLIDFTRDEADVAIRHGRGAYPGLRCELLLRDAV----FPVCSPG-LRDGNPPL 182

Query: 182 -SIQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +++L  H L+  GD +   M  +  WLA V      P+      ++++ ++Q    G 
Sbjct: 183 RELRDLAAHTLLHDGDPVDADMIVWPQWLAAVGAADLRPKRGPTFTHTFM-VLQAATAGQ 241

Query: 240 GIALLPDYIVKD--NP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL    +  D   P +LVR   + +   +  Y   P+   ++ K+  FR ++  +A
Sbjct: 242 GVALATRVLGGDLVRPGSLVRPFAEEVPSPYAFYIVTPDE-PDSPKVARFRAWLHGQA 298


>gi|152997048|ref|YP_001341883.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837972|gb|ABR71948.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 299

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 130/273 (47%), Gaps = 15/273 (5%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA+S SF+  A++L++S+  ++R I  +E  + I+L +R  R ++LT  G    +
Sbjct: 8   KVFIDVAQSRSFSRTADRLNMSRPMVTRYIEAMEDWLKIRLLHRTTRKISLTSAGEACLK 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E++ +     I L  +S + SG +RI +++  G + L   +++F+  +P + I + L
Sbjct: 68  -DVELWLEQADNFISLVNTSEELSGLVRITSSMSFGFSQLMPAIQDFMDQHPKVHIDIDL 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS----IQ 184
           ++   D++    D AIR+       SLI + +        A+P YL+  R+ +      Q
Sbjct: 127 EDSTADLTEKSIDLAIRIASN-PDPSLIGKPIAVCESVLVASPAYLERSRQTIGDIQHPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ + +     K +E   W  +         + C L +N   +++   + G G+ L
Sbjct: 186 DLINHDCLGY-----KNLERHIWHLSQHDQFESVSLDCRLSINEATALLHATLNGMGVCL 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
            P Y+     ++ +L  ++ +       +Y  Y
Sbjct: 241 QPTYLANRYINDGSLCHVLPEWKPKDLIIYALY 273


>gi|148654417|ref|YP_001274622.1| LysR family transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566527|gb|ABQ88672.1| transcriptional regulator, LysR family [Roseiflexus sp. RS-1]
          Length = 293

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 123/276 (44%), Gaps = 38/276 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSFD  +LR+F  VAR+GSFT AA QLH++Q ++S+QI  LE  VG  L  R  R L LT
Sbjct: 1   MSFDLHRLRIFVAVARAGSFTRAAAQLHMAQPTVSQQIGALEDAVGAPLIERGPRRLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY- 119
             G  L    +    +L     E  +++   +G       + +GQ L    L E L  Y 
Sbjct: 61  PAGEALLPYAT----RLALLADEALQATRTAAGVAAHTLRLGVGQTLATYLLPELLCRYR 116

Query: 120 ---PDIQIQLILDNK----------DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH 166
              P    +++  N            I+I++  +  A      +  +  +Q +LV I   
Sbjct: 117 ERAPHCHTRIVTGNSAALLEQVAEGSIEIALVGSPAA---HPDVVVTPFMQDRLVVI--- 170

Query: 167 AYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRIS---C 222
              APH +   RE + + EL    L+T         E  + L ATV+R +G   ++    
Sbjct: 171 --VAPHDIWASREAVDLDELRDRPLLT--------REPGSALHATVERLLGSATLAGDTV 220

Query: 223 LQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRI 258
           + +    +I +   +G G+AL+    V+    L R+
Sbjct: 221 IMLGETEAIKRSVEVGLGVALIQAIAVQREVALGRL 256


>gi|307319792|ref|ZP_07599216.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306894523|gb|EFN25285.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 310

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 2/179 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +GSF+ AA  L  + S++S+ ++ LE ++G +LF R  R L LT+ G    
Sbjct: 23  LMAFVRTVEAGSFSAAARDLGTTPSAVSKGVARLEKKIGTRLFLRSTRALMLTQDGQLFF 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L  ++ E   S + PSG+LRI+   ++   LL      F   YP++ I++ 
Sbjct: 83  DRVAPLLRDLGASE-EAIRSDIAPSGRLRISMPNEMAPLLLPRLFGSFAADYPNLHIEVG 141

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +D+  +  D A+R+        ++ R L  + M    +P +LK    P + + L
Sbjct: 142 LTDRFVDLIREDYDVALRVGNSAPGDYMV-RHLADLPMTIVGSPAFLKTWGNPATAEAL 199


>gi|188588642|ref|YP_001921009.1| transcriptional regulator, LysR family [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498923|gb|ACD52059.1| transcriptional regulator, LysR family [Clostridium botulinum E3
           str. Alaska E43]
          Length = 299

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 129/290 (44%), Gaps = 39/290 (13%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +LR F  +A  G  T AA++L++SQ  +S+Q+  LE E+G+ LF R +R L LT+ 
Sbjct: 1   MDIRQLRYFLTIAEEGHITAAAKKLNISQPPLSKQLKLLEEELGVTLFNRTSRNLELTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   +S++    ++T  E++  +    G L I T    G N+L   +KEF   YP I
Sbjct: 61  GILLQNKSSQLLELYKSTINEMKNFNNGIEGTLGIGTVCSSGINVLPQKIKEFCKQYPKI 120

Query: 123 ----------QIQLILDNKDIDISMDYADCAIRLRKPIQSS---SLIQRKLVTIHMHAY- 168
                     +I  +L+N  ID+          +R+P   S   S I +  +  +++ Y 
Sbjct: 121 DYEIYEGNSFKIMELLNNGVIDVGF--------VREPFNLSLYNSFIIKDNLENNLNDYF 172

Query: 169 --AAPHYLKNCREP--LSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRIS 221
              A     N  E   + I EL    LI    + D+I        +         EP I 
Sbjct: 173 VTIAKSKFYNSIESNTILINELKDKPLIINRRYDDVIKNACNKAGF---------EPHII 223

Query: 222 CLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271
           C + +  ++ + +   G GI++LP       PN+   ++ +I PS   Y 
Sbjct: 224 C-KNDDIITSLSWAEAGIGISILPLTASNILPNVNLKIKKIIEPSIESYL 272


>gi|170721294|ref|YP_001748982.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759297|gb|ACA72613.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 296

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 14/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF VVAR  +F  AA++L ++Q+++++QI GLE  +GIKLF R  RGL+LT  G +
Sbjct: 12  NGLRVFEVVARHLNFRLAADELGVTQAAVAQQIRGLEANLGIKLFERLPRGLSLTGAGQR 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   +  + +    L+      +  L ++ T       L   L  F   +PDI +Q
Sbjct: 72  YSVDIRSAFALIGSATQALRPD----ASHLTVSVTPTFAAKWLIPRLSSFAQQHPDIDLQ 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  ++      +  D A+R   P     L     +   + A A+P  L+   +P  +++
Sbjct: 128 VLATDRLCQFRPEGVDIAVRYGVPPFGPGLHTEPFLAQRVVAVASPALLEQLGKPEDLEQ 187

Query: 186 LDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L ++ L+    +  P  + +        R +  P    ++ N     +   + G G+AL 
Sbjct: 188 LQRYPLLHDAHNFWPGFITE-----VFHRHL-PPGAKNVRFNQTSLAIDAAIAGQGLALA 241

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++ V  +    R+    + V+      Y  +P        L   R ++  +A
Sbjct: 242 SEFFVHSDLRAGRLALAFDQVLDLQQAFYLVWPRNAHQPPALATVRAWLLEQA 294


>gi|27383015|ref|NP_774544.1| DNA-binding transcriptional activator GcvA [Bradyrhizobium
           japonicum USDA 110]
 gi|27356188|dbj|BAC53169.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 299

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 121/290 (41%), Gaps = 12/290 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L+++Q++IS QI  LE E+GI+LF R  R L LT +   
Sbjct: 9   NGLRAFEAAARHLSFTLAASELNVTQTAISHQIRRLEEELGIRLFIRQNRALALTPEARD 68

Query: 66  LHRVTSEVYHKLE-TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   ++ L   T   L+    K    L ++T   L    L   L +F   +P I +
Sbjct: 69  YLPGVRAAFNDLRLATDRLLRRDDDK---VLTLSTLASLAAKWLLPRLTDFQEQHPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++      +D   D  D AIR  +  Q   L    L+   +    +P  L+  +     +
Sbjct: 126 RITTSTSLVDFQRDDVDAAIRYGRG-QWPGLRADWLMADELFPVCSPSLLRGDKPLQRPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H L+   +      +D+  WL     P    +   +  +     +Q  + G G+A+
Sbjct: 185 DLRNHPLLHTSN---ANSDDWRLWLTAAGLPADIAKQPGITFDMIFMTIQAAIDGIGVAM 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                V+D+     LV   +  +      Y   PE  +   KL AFR +I
Sbjct: 242 GRTSYVQDDIAKGRLVVPFKIALPADAGFYLVAPEGRREAPKLAAFRQWI 291


>gi|237510186|ref|ZP_04522901.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|254193240|ref|ZP_04899675.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|169649994|gb|EDS82687.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|235002391|gb|EEP51815.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 330

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 25/294 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 48  NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFALFMRHARGLTLTVEGEQ 107

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +      +   +  F   +PD+ +Q
Sbjct: 108 LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MRWVLPRIMRFQREHPDLHVQ 162

Query: 126 LILDNK-DIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    + D+D   +  D AI         + +  L   +L  +      AP  L+    P
Sbjct: 163 MTTTWRHDVDFQSEPFDAAIVYGMSPGPDVAAVPLFDERLTPV-----CAPDLLEG--RP 215

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
           L+ +++L  H L+  T      +   D+   A VD P   P    L + +  +   + V 
Sbjct: 216 LARVEDLACHTLLHPTRDHRDWRRWLDYAGAAGVD-PDRGPSFDSLDLATSAATQGFGVA 274

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LG       D+  +    L   ++ V       YF YPE++    K++ F  ++
Sbjct: 275 LGDLTLSEEDFAAR---RLAMPLDIVQRTGARYYFVYPESVAQQQKIQRFSAWL 325


>gi|90577773|ref|ZP_01233584.1| hypothetical LysR, Transcriptional regulator [Vibrio angustum S14]
 gi|90440859|gb|EAS66039.1| hypothetical LysR, Transcriptional regulator [Vibrio angustum S14]
          Length = 311

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 134/293 (45%), Gaps = 12/293 (4%)

Query: 6   DKLRVFYVVARSG---SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D L+   ++A  G   +FT AA++L +S+S +S+QI  LE  +G +L  R  R + LTE 
Sbjct: 3   DNLQQMVILAAIGHEQNFTKAADRLGISKSQVSKQIKCLEERLGCQLVQRSTRTVVLTEI 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      ++   +   +  +     + +G LRI      G   +   L EF    P++
Sbjct: 63  GVQYADYGQQLIDTVNEAEAMVAGYRNEITGVLRIGIAQSFGNIHITSALAEFQKQNPEL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L +   ++  +  DC I + +      ++ RKL        A+P Y+    EP+ 
Sbjct: 123 ELEISLFDHRPNLLEEGFDCWIAIHEH-PPEGMVARKLAKCEFVVVASPDYIAQHGEPIV 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +L +HN IT+     K +   NW    D      R++   ++++  +++   + G GI
Sbjct: 182 PGDLRQHNCITYQSRERKYV---NWEFGRDGLKQSIRVNGNYRIDNAPAVLDAALSGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L  Y++ D      L+ ++ D   T    +Y  YP       K++ F +F+
Sbjct: 239 AYLSTYLLTDEIKTNKLITLLNDWKTTVELPIYAVYPRRKYLAPKVRCFIDFM 291


>gi|221200786|ref|ZP_03573827.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206982|ref|ZP_03579993.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221173056|gb|EEE05492.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221179358|gb|EEE11764.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 306

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 1/179 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA QLH +Q ++SR++  LE  +G++L  R    + LT 
Sbjct: 5   GYRFELMETFVRIVEAGSLSAAAAQLHTTQPTVSRRLQALERSLGVRLLQRTTHAMRLTV 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++       + +L+ +  +P G LR+A     GQ      L  FL  YP 
Sbjct: 65  DGERCFKRAKDLLASWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVEPLARFLRDYPR 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++ +L +   D      DCAI++ +P     ++  +L  +     AAP  L     P
Sbjct: 125 VSVEWLLQDDVRDFVGSGIDCAIQVGEPTD-PGVVAIRLTNVPRFVAAAPSVLGGADVP 182


>gi|254255173|ref|ZP_04948489.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124900910|gb|EAY71660.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 329

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 121/287 (42%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  S+T AA++L LSQS+ISRQ+  LE+++G+ LF R  R + LTE G +  
Sbjct: 47  LLAFEAAARHESYTRAADELSLSQSAISRQVQTLESQLGVPLFRREGRAVKLTEVGRRYF 106

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++    ++   S    +G LR+AT    G   L  +L  F   +P + + L 
Sbjct: 107 VELGGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHGFYAAHPGVTVHLH 165

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                ID   D  D AI +        L   +L    + A A+P          +     
Sbjct: 166 SRIGAIDFHTDDIDAAITVGAG-NWPGLHAHRLYNEFLIAIASPDTAGRRAAARAPAWAI 224

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
              L+          E F+      R +   RI    ++ S+L  +Q    G GI L+P 
Sbjct: 225 GQTLLGVTSNQHAWAEWFSHYRLDHRRM---RIGPSFELTSHL--IQAVRAGMGIGLVPK 279

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +V+D  + N +  + D IT   + Y  YP        L AFR+++ 
Sbjct: 280 VLVEDELSRNELVSIGDAITSERSYYLVYPPENDTLPSLVAFRDWLL 326


>gi|325121952|gb|ADY81475.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 283

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 133/290 (45%), Gaps = 21/290 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ L  F V     S + AA +L +  +++SR+I+ LE  + +KL  R  R   LT  G
Sbjct: 3   DWENLHYFSVFTEEKSLSAAARKLGVDHATVSRRIAQLEQNLKLKLVDRRPRTYILTPDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +V + +  +  + +   Q    +  G + I+       +L+  +L +F   YP ++
Sbjct: 63  ERLAQVVARMMEETFSIERLTQAGQQEVMGSVSISMPPLTAAHLIMPHLGKFYRHYPQLK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ D   + +    AD A+R  +P +  +L+ RK+  I    Y  P+YL +  +P + 
Sbjct: 123 LRVLGDVHYVSLQHSEADIAVRFGRP-KEENLVARKVGEIPFGIYVGPNYLAST-DPENY 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +        G    K  E  N    +   + P  + R +C ++              G
Sbjct: 181 DWISVEVGGVHGQKQQKLKERLNHKEPIMVTNNPELQWRAACGEI--------------G 226

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LPD++   + NL+R+ +D    S  ++    E L+++  ++   +F+
Sbjct: 227 LAVLPDFLGALS-NLIRLQDDYPM-SAEIWLVTHEDLRHSPAIRVVMDFL 274


>gi|296388857|ref|ZP_06878332.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 309

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 1/192 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +
Sbjct: 10  DEVATLLALAEHGSFAAAGRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++
Sbjct: 70  LASRFRQAVDLLDEAEHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVMLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                + +DI  +  D AIR+ + +  S L+ R+L        AAP YL+    P    +
Sbjct: 130 TDYSERFVDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLERHGVPRIPAD 188

Query: 186 LDKHNLITFGDL 197
           L  HN + F  L
Sbjct: 189 LAAHNCLGFSGL 200


>gi|229150618|ref|ZP_04278832.1| Transcriptional regulator, LysR [Bacillus cereus m1550]
 gi|228632705|gb|EEK89320.1| Transcriptional regulator, LysR [Bacillus cereus m1550]
          Length = 300

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDIDISM--DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLRNELDIGITFL-PVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    +  N+     RPI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKLNF---KPRPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP    D++   N   ++I     TP   +   Y
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPIIEIGLIY 274


>gi|221210293|ref|ZP_03583273.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221169249|gb|EEE01716.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 306

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 1/179 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA QLH +Q ++SR++  LE  +G++L  R    + LT 
Sbjct: 5   GYRFELMETFVRIVEAGSLSAAAAQLHTTQPTVSRRLQALERSLGVRLLQRTTHAMRLTV 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++       + +L+ +  +P G LR+A     GQ      L  FL  YP 
Sbjct: 65  DGERCFKRAKDLLASWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVEPLARFLRDYPR 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++ +L +   D      DCAI++ +P     ++  +L  +     AAP  L     P
Sbjct: 125 VSVEWLLQDDVRDFVGSGIDCAIQVGEPTD-PGVVAIRLTNVPRFVAAAPSVLGGADVP 182


>gi|218678851|ref|ZP_03526748.1| transcriptional regulator, LysR family protein [Rhizobium etli CIAT
           894]
          Length = 226

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 9/186 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG---- 63
           + +F  V  +GSF  AAE   +S + +++ I  +ET +G KL +R  R   LTE G    
Sbjct: 7   MAMFVRVIDTGSFAAAAEIAQVSPAMVAKHIKTIETRLGAKLIHRTTRRHQLTEVGQLYY 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R  SEV    E +  ELQ +   P G+LR+   +  G   L   L E+   YPD+ 
Sbjct: 67  ERCKRALSEVA-LAEASASELQSA---PRGRLRLVAPVSFGTQNLVPALVEYQNAYPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L LDN   D+  +  +  I +  P+   SL+ R L        A+P YL     P S 
Sbjct: 123 IELSLDNNVHDLVGEGFELGIHI-GPLADDSLVARPLTPYRRILAASPDYLVRHGRPASP 181

Query: 184 QELDKH 189
           + L  H
Sbjct: 182 EALTNH 187


>gi|209517414|ref|ZP_03266256.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209502181|gb|EEA02195.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 312

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 2/190 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +++F      GSF+ AA QL+++ +  S  +  LE  +  +LF R  R + L++ G +
Sbjct: 5   DDVQIFVHTVDYGSFSEAARQLNIAPAHASASVQRLEKALDTRLFTRSTRSMQLSDAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   LE  +  L       SG LR++   D G+NLL   L EF   +P + + 
Sbjct: 65  YLPHARVMIGALEQGEQALANGRGALSGPLRLSAPSDFGRNLLLPWLDEFQHRHPGLSLH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQ 184
           + + ++  D+     D  +R    +  SSL+  KLV  +  A  AAP YL+    P  ++
Sbjct: 125 VKMSDRAADLIRQPLDAVVRY-GALSDSSLLAMKLVDNNRRALCAAPSYLERHGAPAKVE 183

Query: 185 ELDKHNLITF 194
           +L +HN + +
Sbjct: 184 DLRRHNCLRY 193


>gi|90412559|ref|ZP_01220561.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90326367|gb|EAS42779.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 295

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 139/297 (46%), Gaps = 25/297 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V ++GSF  AA Q  +  S++SR+I  LET+ G KL  RHA+ ++LT+ G  
Sbjct: 4   DDLDLFLTVVKAGSFASAARQRAIPTSTLSRRIQQLETDTGRKLLVRHAKDMSLTKDGQL 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +  S V+  +      + +     SG + I   I   ++ +     EF  L+P +QI+
Sbjct: 64  LVQQFSTVFDDIHLRLESVDKEKEDFSGVIVINAPIIPLKHQIGPLALEFAKLHPKVQIR 123

Query: 126 LILDNK-------DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
             L N+       DIDI++ +        +P  +S  + ++L          P YL +  
Sbjct: 124 FQLGNQNNYHLRGDIDIALRFG------HQP--ASDWVAKRLSHNPSVICTTPDYLNDKP 175

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVL 237
           +     +L +++L++     P+    FN ++    + I   RI   +++   +I +  V 
Sbjct: 176 DLTHPNQLVRYDLLSPS---PQQRWVFNHISGESVKFIPNARIQSDELD---TIHRAAVA 229

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G GIA LP++  K   +N  L+++  D       V   YP+    + + +A  +FIF
Sbjct: 230 GLGIARLPEWYTKKSFENGELIQLFPDWQMEGSDVALLYPQRKLLSERTQALIDFIF 286


>gi|34496151|ref|NP_900366.1| transcription regulator protein [Chromobacterium violaceum ATCC
           12472]
 gi|34330284|gb|AAQ58372.2| transcription regulator protein [Chromobacterium violaceum ATCC
           12472]
          Length = 292

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 123/286 (43%), Gaps = 17/286 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   A   SF+ AAE LH++  ++SRQI  LE  +G  LF RH R + LT+ G  
Sbjct: 9   NALRAFEAAAVRQSFSEAAELLHVTHGAVSRQIRLLEAWLGTPLFERHHRQVRLTDAGRG 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     ++ET    L++  +     LR+          L   L  F L +P ++++
Sbjct: 69  YLADVRAALERIETASARLRQGPL----PLRVNAPATFTLRWLIPRLSRFQLAHPHVEVK 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQ 184
           L   ++ +    D  + AIR   P      I  + +        +P  L+  R PL S  
Sbjct: 125 LTTSSEPVAQLADSFEVAIR-GGPQALPGFIAHEFLQESRLPVCSPGLLE--RLPLASPA 181

Query: 185 ELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H L+ T G   P+      WL     P  +P  S    + YL+ +Q  + G G+AL
Sbjct: 182 DLVRHTLLHTAGS--PEFWP--QWLDAAGVPDLQPAASLTLEHFYLT-LQAALDGLGVAL 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT--VYFCY-PEALKNTGKLKAF 286
            P  ++ D+    R+++    P      YF Y PE       + AF
Sbjct: 237 GPSRLIADDLAAGRLVQPFAGPRLEDWRYFAYVPETRDGHPAVAAF 282


>gi|127512061|ref|YP_001093258.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126637356|gb|ABO22999.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 313

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 135/290 (46%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G  
Sbjct: 6   EPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    E+    +     +   +    G L++  +   G   +   L +F+  +P++++Q
Sbjct: 66  LYAQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPDFMARHPELELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  + + + +    ++ R L+       A+P Y+     P   ++
Sbjct: 126 VSLLDHKVDVVSEGLDLLLTMSEQL-PLGMVARPLMKCQFLLAASPEYVAKHGYPERPEQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +     +  E   W         E  +S   +V++  ++    V G G+  L
Sbjct: 185 LVDHNCLVYHG---EWHEHSVWQFKKGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVYL 241

Query: 245 PDYIVK---DNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y+++   +   LV ++ E  +T    +   YP       K+ AF +FI
Sbjct: 242 ASYLLENEIEKGTLVPLLPEWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|134292989|ref|YP_001116725.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|161521336|ref|YP_001584763.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352498|ref|YP_001948125.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|134136146|gb|ABO57260.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
 gi|160345386|gb|ABX18471.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336520|dbj|BAG45589.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 297

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 87/190 (45%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  +AR GSFT AA  L ++QS++S+ I  +E  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLAFVTIAREGSFTRAAATLGVTQSALSQTIRAMEESLQIRLLSRTTRSVSPTPAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +       +++     L E   KP+G +RI     +  ++L   L   L  YP+I+
Sbjct: 65  ERLLQAIGHRLDEIDAELDALTELREKPAGTVRITCGDYMLHSILLPKLAPMLQEYPEIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  ++    DI  D  D  +RL   I    +       + M    +P Y  N   P   
Sbjct: 125 LEFDVNYGFRDIVADRFDAGVRLGSTIDKDMIAVPIGPALRMAVVGSPAYFANRPIPKKP 184

Query: 184 QELDKHNLIT 193
           Q+L  HN I 
Sbjct: 185 QDLMHHNCIN 194


>gi|332716920|ref|YP_004444386.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325063605|gb|ADY67295.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 322

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 122/292 (41%), Gaps = 23/292 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     +AR G+F  AA  L +S +++S  I  LE  +G++LF R  R ++LT+ G   
Sbjct: 29  ELEAVIAIARRGTFRAAAIDLGMSTTALSHTIGRLEAGLGVRLFNRTTRSVSLTDAGRLF 88

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  +     L      ++     PSG +RI       + ++   + EFL  YP++ + L
Sbjct: 89  VQQVAPSLQDLHAALETVRSQRETPSGTIRINAAPFAARAIISPLVLEFLRRYPEMNVDL 148

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSIQE 185
           + + K +DI  D  D  +R+   +  S +I   L     HA   +P Y     +P+   +
Sbjct: 149 VTEGKMVDIVNDGFDLGVRVAG-LVPSDMIAVSLGRPQRHAVVGSPDYFAQHPKPVVPPD 207

Query: 186 LDKHNLITF----GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  H  I      G L       F W     D P+       + ++    +    + G+G
Sbjct: 208 LLNHRCIRVRLPDGSL-------FRWRFEKDDEPVQIDVRGPITLDEAGLVRTSVLEGTG 260

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +       +LPD        LVR++ED   P   +   YP     +  +KAF
Sbjct: 261 LGYTMEEEVLPDIKAG---RLVRVLEDWTPPYPGLCLYYPGRRNLSAGVKAF 309


>gi|313499237|gb|ADR60603.1| DNA-binding transcriptional regulator DsdC [Pseudomonas putida
           BIRD-1]
          Length = 315

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 6/179 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L VF V AR  SF+ AA++L L+ S++S +I+ LE E+ +KLF+R  R ++LTE G +L
Sbjct: 18  SLHVFLVAARHLSFSRAADELCLTASAVSHRINRLEDELALKLFHRMPRKVSLTEDGERL 77

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V      +L     E   + +  +G+L +     + Q  L   L +F   YPDIQ+ +
Sbjct: 78  FAVMQRTMDELSEAVQERAHAEI--AGQLTLYVRPSVAQCWLVPRLAQFTARYPDIQLDI 135

Query: 127 ILDNKDIDI---SMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + N+ ID     +D   C      P +QS  L+  ++  +    YA  H L     PL
Sbjct: 136 RVGNESIDYRTRKIDLVLCYSDGHHPGLQSIHLMDERIAPVCSPRYAETHALTGDLHPL 194


>gi|222084563|ref|YP_002543092.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722011|gb|ACM25167.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 312

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 123/268 (45%), Gaps = 16/268 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++R F  VA  GS +  A +L + QS+++R +  LE  VG+ L  R  R +T+T++GS+
Sbjct: 9   ERMRTFVRVAERGSLSAVARELEIGQSTVTRHLRELEEAVGVPLLSRTTRRVTMTDEGSR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  + ++   +E    E + +   P+G +RI+ T   G   +   +  F   YP+I + 
Sbjct: 69  YYADSIQILRLVEQAGDEARSTRGAPAGTIRISCTAAFGVLHISRMIFAFQDRYPEIAVD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D A+RL  P+  SS   R L        AAP YL     P+  Q+
Sbjct: 129 LSLTDERVDLVEEGVDIALRL-GPLADSSTKLRALGQSRRLLAAAPAYLAARGTPVVPQD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  H  I   ++      D   L   D      P G       +V+  L+  +  V G G
Sbjct: 188 LCDHEGIRMSNI---AGSDTLVLQGPDGKRHMVPFG----GRFRVDHGLAAREALVAGRG 240

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITP 265
           IA    ++V D      LV I+ D   P
Sbjct: 241 IAPTHHWLVDDLLATGRLVAILPDYALP 268


>gi|167568435|ref|ZP_02361309.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 293

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 118/260 (45%), Gaps = 14/260 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   AR  SF+ A E+LH++  +ISRQI+  E  +G  +F+R  + + LT++G +  
Sbjct: 11  LKAFEAAARHESFSAAGEELHVTHGAISRQIAAFEAWLGKPVFHRRGKRVKLTDEGRRYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  +     +L+E+    +  LRI          L   L  F    P+++++L 
Sbjct: 71  ATVEAAFDSIARATEQLRETGA--ARVLRINALPTFAMKWLLPRLSRFQREVPNVELKLS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186
             N  +  S+D  D AIR R P +  +    + +   M    +P  LK  R P+ S  +L
Sbjct: 129 TSNAPLG-SLDGFDVAIR-RGPGRWPNCASGRFLDESMIPVCSPALLK--RTPIASADDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H L+   D  P    +  W A    P+ G  + S    + +   +Q  V G G+AL P
Sbjct: 185 ARHVLL-HSDTRPDAWRE--WFAAAGTPMKGRKKQS---FDHFYLALQAAVDGLGVALGP 238

Query: 246 DYIVKDNPNLVRIMEDVITP 265
             ++ D     R++  + +P
Sbjct: 239 LPLIADELASGRLVTPLPSP 258


>gi|86144673|ref|ZP_01063005.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           sp. MED222]
 gi|85837572|gb|EAQ55684.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           sp. MED222]
          Length = 312

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AA   +LS + IS+ +  LE+ +  +L +R  R  +LT+ G   +
Sbjct: 7   MKVFVYVVEQGSFRSAANHFNLSATMISKHVHHLESSLNSQLIHRTTRKQSLTDSGQLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   +   +  +Q    +P G ++I   +  G  +L   + +FL  +P I ++L+
Sbjct: 67  RECKRILEDISNAENLIQTLENQPQGTVKINCPVTYGNKVLAPIVAKFLAHHPTINVELV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N  +D      D  +R+   +  SSL+ R L    M   AAP YL    E   +++L 
Sbjct: 127 LNNDLVDPYSSDIDLIVRIGD-LSDSSLVARYLGDYEMCYCAAPEYLNQHAEIRVLEDLA 185

Query: 188 KHNLITF 194
           +H  + F
Sbjct: 186 QHPSLGF 192


>gi|94313187|ref|YP_586396.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93357039|gb|ABF11127.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
 gi|222832804|gb|EEE71281.1| predicted protein [Populus trichocarpa]
          Length = 303

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 125/299 (41%), Gaps = 25/299 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F      G F  A   L + +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 5   DLNDLYYFAQSVEHGGFAPAGRALGMPKSKLSRRIAMLEERLGVRLIQRSTRQFAVTEIG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  Q  ++    +P G LR+   + L Q  +   L EF+  +P + 
Sbjct: 65  RVYYEHCKAMLMQAEAAQEAIEVIQAEPRGTLRMTCPVALLQVHVGTILSEFMARHPLLT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D   +  D AIR+R  P+Q S L+ R L        A+P   +    P +
Sbjct: 125 VHLEATNRRVDPVAEAIDLAIRVRPPPLQDSDLVIRVLAERSQCLVASPALAQAHGMPPA 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW--------LATVDRPIGEPRISCLQVNSYLSIMQY 234
             EL     +  G   P+  +D  W         AT+      PR   L     +++   
Sbjct: 185 PAELSDWPSLAIG--TPQ--QDHTWHLYGPDGVQATIHH---RPR---LVTGDMIALRNA 234

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V G G+  LP  +V+D   + +LVR++ D       ++  +P      G L   R  I
Sbjct: 235 AVAGVGVCQLPVMMVRDQLTDGSLVRLLPDWAPRREILHAVFP---SRRGLLPGVRLLI 290


>gi|311105679|ref|YP_003978532.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760368|gb|ADP15817.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           68 [Achromobacter xylosoxidans A8]
          Length = 295

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 123/301 (40%), Gaps = 35/301 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  S   AA++L ++  ++S+ I  LE  +G+ LF R  RG+ LT+ G  
Sbjct: 10  NALRAFEAAARHLSVKDAAQELCVTPGAVSQMIKSLEQHLGVALFQRVNRGIQLTDAGHG 69

Query: 66  LHRVTSEVYHKL--ETTQIEL-QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                   + ++   + +I L  ES V     L ++TT       L   L +F   +P I
Sbjct: 70  FLPPVRNAFRQILAASARIALPSESRV-----LTVSTTAFFASAWLVPRLHDFHARHPQI 124

Query: 123 QIQLILDNKDIDISMDYADCAIR---LRKP-IQSSSLIQRKLVTIHMHAYAA-----PHY 173
            +Q++  N       D AD AIR    R P +QS  L+  ++V +      A        
Sbjct: 125 DLQIVTSNALAAFGRDGADIAIRHGLGRYPGLQSEHLLTVEVVPVASAGLVAKLGMPAGA 184

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
           L   R P    E      + F     + +ED          +G PR       S L  +Q
Sbjct: 185 LDLLRWPRVHDEARSGWQLWFAA---QGLED----------VGMPRGPAFDDGSLL--LQ 229

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G G  LLP  +V+D      LVR+  D     F  Y  +P      GK + FR+++
Sbjct: 230 AVAAGQGAGLLPLAMVRDELAAGRLVRLAGDAWLEEFGYYLVWPGRGAMPGKAQVFRDWL 289

Query: 291 F 291
            
Sbjct: 290 L 290


>gi|308048303|ref|YP_003911869.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307630493|gb|ADN74795.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 298

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 112/271 (41%), Gaps = 15/271 (5%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           + F  V R  SF+ AAE LH++QS++S Q+  LE+ +G  L  R  R  TLT  G + + 
Sbjct: 10  QCFEAVVRLNSFSKAAEALHITQSAVSHQVRQLESYLGESLLARQGRHWTLTPTGQRYYD 69

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             S     L      ++E +   SG LR+A    L    L   L +    +P+I++ L +
Sbjct: 70  AISPALQGLAQASSVIREGA---SGPLRLALYSSLAVKWLIPRLADLRKAHPEIELSLNM 126

Query: 129 DNKDIDISMDYADCAIRLRKP---IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              D   S +  DC I +  P   + S  L Q +L+         P   +  R     Q 
Sbjct: 127 TADDPVCSDEVGDCFITISPPSVGVVSHHLYQERLLPA-----CGPGLWQQLRNQALPQA 181

Query: 186 LDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H L++      +   D+  W      P  EP      V+  L   +      GIALL
Sbjct: 182 LWQHPLLSVESSFRQPGADWLAWCQQCGCPAPEPG-QFQHVSHMLLAAEAARYDQGIALL 240

Query: 245 PDYIVKDN--PNLVRIMEDVITPSFTVYFCY 273
             Y++ D     LVR+    +      YF Y
Sbjct: 241 NHYMLNDEGAAGLVRLPLPELATGDHFYFVY 271


>gi|265985702|ref|ZP_06098437.1| transcriptional regulator [Brucella sp. 83/13]
 gi|264664294|gb|EEZ34555.1| transcriptional regulator [Brucella sp. 83/13]
          Length = 198

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 95/180 (52%), Gaps = 1/180 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE G   
Sbjct: 6   RMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+I + +
Sbjct: 66  YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P   ++L
Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQRPEDL 184


>gi|209694804|ref|YP_002262732.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
 gi|208008755|emb|CAQ78949.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
          Length = 335

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 133/289 (46%), Gaps = 14/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  +    S + AA+ L +S++ +SR ++ LE+ + ++L +R  R L+LT  G +  
Sbjct: 45  LHVFVTIVEQKSLSAAADHLDMSRAKVSRYLAELESWMDVRLLHRTTRSLSLTTPGEETL 104

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +     T      +++VK  G+LRI  +  L  + L   + EF+ ++P+  I ++
Sbjct: 105 DAARNLLALAGTLDGIRNQNTVKLKGQLRITASYSLIDSCLIDVIDEFVTMWPETSIDIL 164

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ ++I     D AIR+   ++  +++ ++L        A+P YL     P ++Q L 
Sbjct: 165 STDESVNIIESRIDLAIRITNDVE-PNIVAKRLGECRSIICASPSYLAKNGTPQNVQALS 223

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALL 244
           +HN +++            W+   D P G    P    +  N    ++   + G+GI+  
Sbjct: 224 QHNCLSY-----TYFGRSAWV--FDGPNGPESVPITGNISANLSEVLLAATLRGNGISQQ 276

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V+   +  +LV ++ +       VY  Y    + T   +AF +F+
Sbjct: 277 PLPTVQPLINRGDLVALLPEWQPKILNVYAIYATRKQVTPLQRAFIDFL 325


>gi|121608330|ref|YP_996137.1| LysR family transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121552970|gb|ABM57119.1| transcriptional regulator, LysR family [Verminephrobacter eiseniae
           EF01-2]
          Length = 305

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 128/283 (45%), Gaps = 26/283 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+FD   +R F  VA  GSF  AA+ LH+SQ ++SR++  LE  +G +LF R  R + L+
Sbjct: 1   MNFDLSDMRAFVAVADLGSFRAAAQTLHISQPALSRRVEKLEQAMGFRLFERTTRKVELS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G         V  +LE   + + + S +  G++ +A       +LL G ++ F   +P
Sbjct: 61  AIGRSFVPKARHVLSELENALLGMTDMSDRLRGQVTVACVPSSVPHLLAGAVEAFQRKFP 120

Query: 121 DIQIQLILDNKDIDI-------SMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPH 172
            I+++LI D    +I         D+       ++P ++   L+Q   V   +      H
Sbjct: 121 RIRVRLI-DETATEILLAVVRSEADFGVSYWGAQEPDLEFQGLVQEPFVLACLPG----H 175

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLS 230
            L   R  +   EL +H+ +T        M     L+TV  P   PR +C    V + LS
Sbjct: 176 PLARKRR-VKWAELAQHDCVTLPPGTGNRMLIDQALSTVAYP---PRWTCEARHVPALLS 231

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNL----VRIMEDVITPSFTV 269
           +++    G G+  +P + ++         VR++E  +T +  V
Sbjct: 232 LIEA---GVGVGAVPRFAIRGGQGATLASVRLVEPEVTRTIGV 271


>gi|13470844|ref|NP_102413.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14021587|dbj|BAB48199.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 311

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 124/286 (43%), Gaps = 12/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L V   VAR G F  AA +L +S S++S  +  +E  +G  LF R  R ++LTE G  L 
Sbjct: 9   LPVIVAVARRGGFALAAAELGMSPSAVSHAVRLVEERIGQPLFARTTRSVSLTEAGKALV 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRI-ATT--IDLGQNLLQGNLKEFLLLYPDIQI 124
              +     +     +++    +PSG LRI A+T  I L    +   + E    YPD+ +
Sbjct: 69  ETAAPALQDIGERIDQIRSVKGRPSGLLRINASTIAIPLAVTPVVAAMAE---RYPDVTV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D   +DI  +  D  IRL + I    +  R          A+P Y+     P S+ 
Sbjct: 126 EIFADQGLVDIVGEGFDAGIRLGEMIAQDMVAVRLTPPFRTIIVASPAYIGRHGRPRSVA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  HN I +  LI +    + W LA   + +         V   L+ +   + G G+A 
Sbjct: 186 DLANHNCIGY-RLI-RSGALYRWDLAEDGKDVIMETGGTAIVTDSLAAIDLALAGVGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           + + + + +     LV+++         ++  +P       KL+AF
Sbjct: 244 MFEPLARADLAAGRLVQVLPQSAIEEPGLFLYFPRRAAMAPKLRAF 289


>gi|89067483|ref|ZP_01154996.1| regulatory protein, LysR:LysR, substrate-binding [Oceanicola
           granulosus HTCC2516]
 gi|89047052|gb|EAR53106.1| regulatory protein, LysR:LysR, substrate-binding [Oceanicola
           granulosus HTCC2516]
          Length = 291

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 115/269 (42%), Gaps = 19/269 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR GS + AA +L+++ ++I++ +  LE   GI L  R  R + +T +G  L 
Sbjct: 12  LRGFEAAARLGSLSAAARELNVTHAAIAQHVRTLEDHFGIPLLQRQGRTMAVTVEGQPLA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E +  +     ++ ++    S  LR+A T     N L   +  F L +P++ ++L+
Sbjct: 72  RALGEAFGIIGAASRDMLDTG--SSRALRVALTPSFAANWLMPKISGFWLKHPEVTLELM 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +N  +D+  D  D AIR  +      L    LV   ++A  AP   +   E   + +  
Sbjct: 130 PNNDLVDLRADGIDLAIRYGRG-GWPGLDSEPLVVASLYAVGAPGRYRAT-EGEGLAQFA 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               I    L     E+  W  +    + E R+  LQ +S    M+    G GI +LP  
Sbjct: 188 GETWI----LDRGAREEQIWALSHGIDLAEERV--LQFDSAQLAMEAAKAGLGITILPRP 241

Query: 248 IVKDNPNLVRIMEDVITPSFTVYFCYPEA 276
           I         ++ D+     TV     EA
Sbjct: 242 I---------LLADIRAGRLTVLGAQEEA 261


>gi|53716255|ref|YP_106375.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53721280|ref|YP_110265.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|67642824|ref|ZP_00441576.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121597290|ref|YP_990422.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124382916|ref|YP_001024916.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126446071|ref|YP_001079258.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|134280652|ref|ZP_01767362.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167002050|ref|ZP_02267840.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167722236|ref|ZP_02405472.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167818412|ref|ZP_02450092.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167896865|ref|ZP_02484267.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167905250|ref|ZP_02492455.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|217423177|ref|ZP_03454679.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|254176539|ref|ZP_04883197.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254203360|ref|ZP_04909721.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254205239|ref|ZP_04911592.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254356050|ref|ZP_04972327.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52211694|emb|CAH37692.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|52422225|gb|AAU45795.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|121225088|gb|ABM48619.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|126238925|gb|ABO02037.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134247674|gb|EBA47758.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147745599|gb|EDK52678.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754825|gb|EDK61889.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148025033|gb|EDK83202.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160697581|gb|EDP87551.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|217394085|gb|EEC34105.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|238524024|gb|EEP87459.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243062207|gb|EES44393.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|261827039|gb|ABM99478.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 298

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 127/301 (42%), Gaps = 34/301 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F   A+  +F++AA +L L+ S++SRQI+ LE  +G+KLF R  R L LT  G   
Sbjct: 10  ELHAFASSAKHLNFSYAARELGLTPSAVSRQIASLEALLGVKLFVREGRNLALTRAGQVY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++    +EL  S+ + S  L IA+        L   L  FL   PDI +  
Sbjct: 70  QARVAGPLREIGNASLELL-SAREDSNLLTIASVPTFTTKWLVPRLPRFLETAPDITLSF 128

Query: 127 ILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
                  D+     D AIR      + +Q   L  R  V +    +A  H L   REP  
Sbjct: 129 RRHLAPGDLFPLGLDAAIRYGDGRWEGVQCDYLDGRTFVPVCAPGFAERHAL---REPAD 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYC 235
           I    +        L+ +  E   WLA  DR        +  PR        Y  ++Q  
Sbjct: 186 IAAAPR--------LVHEQAE-CAWLAWADRHRATQMNALAGPRF-----EQYSVLIQAA 231

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP----SFTVYFCY-PEALKNTGKLKAFRNFI 290
             G GIAL+P ++++       +++ +  P      + Y CY PE L+ +  L+  R ++
Sbjct: 232 QAGLGIALIPAFLIRAPLAAGTLVQPLDAPVDVDEQSHYLCYAPERLQASASLRLLREWM 291

Query: 291 F 291
            
Sbjct: 292 L 292


>gi|222084990|ref|YP_002543519.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722438|gb|ACM25594.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 274

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 90/169 (53%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           ++LS+S+I + I+ LE  + ++LF+R  R  +LT++G   +        ++++ +  L+ 
Sbjct: 1   MNLSRSAIGKTIAKLERRLSVRLFHRTTRTQSLTDEGQAFYERCRRALDEIQSGEAMLES 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
              + +G+LRI+  +  G+  +   L E    +P++++ L   ++ +D+  +  D AIR 
Sbjct: 61  GKREVAGRLRISMPVLFGRRCIAPLLMELARAHPNLELDLSFSDRVVDLLDEGFDLAIRN 120

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG 195
                S+ L+ R++    M   A+P YL     P +I +L+ H+LI + 
Sbjct: 121 GPLRDSAGLVTRRVARHRMVVCASPAYLAKRGTPQAIADLEDHDLIAYA 169


>gi|194290029|ref|YP_002005936.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223864|emb|CAQ69873.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 301

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 22/253 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD   L +F  VAR GS +  A Q HL+ ++ S++IS LET VG  LF+RHA G+ LTE 
Sbjct: 6   FDLVTLGLFVAVARQGSISAGARQSHLAVAAASKRISDLETAVGAPLFFRHAAGVQLTEA 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +   +E     + + +    G++R+          L  +L  F+  +P I
Sbjct: 66  GQACFHHALTILQDVERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLASFMQRHPTI 125

Query: 123 QIQLILDN-KDIDISM--DYADCAIRL-RKPIQSSSLI---QRKLVTIHMHAYAAPHYLK 175
           +I+L   N +DI  ++  + AD  I   R P      +   Q +LV I       P++  
Sbjct: 126 RIELEEQNSRDIVAALVENRADVGIFADRTPAAGLMTVEYRQDELVII-----TPPNHPL 180

Query: 176 NCREPL---SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
             R P+      E D  +L     L  + +E+ + L   DRP    R+  +QV S+ ++ 
Sbjct: 181 AARGPVHYADTLEFDFVSLPQETSLAARLLEESSRL---DRPF---RLR-IQVRSFDAMC 233

Query: 233 QYCVLGSGIALLP 245
           +  + G G+ +LP
Sbjct: 234 RMVMAGLGVGVLP 246


>gi|113968752|ref|YP_732545.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113883436|gb|ABI37488.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 305

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VA  GS + AA ++ LS +S S  I  LE ++   LF R  R L LT QG +
Sbjct: 4   NDLALFVRVADCGSISAAAAEMELSAASASAAIKRLEKQLDTSLFVRTTRSLRLTAQGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      L   +  +     K SG L ++ + D G+NL    L +FLL +P +Q++
Sbjct: 64  YLIHCRRALSDLALGEQAIASDKGKISGTLSLSVSSDFGRNLFVPWLDDFLLDFPQLQVR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +       D  D A+R  KP Q S+ +   + ++     A+P YL    +P ++++
Sbjct: 124 LHLGDNISSFYHDKIDVAVRYGKP-QDSNQVAFPICSVDRVLCASPEYLAKFGKPETLEQ 182

Query: 186 LDKHNLITF 194
           L +HN + +
Sbjct: 183 LTQHNCLFY 191


>gi|261252521|ref|ZP_05945094.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260935912|gb|EEX91901.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 305

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 117/243 (48%), Gaps = 11/243 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  + ++     A  +L LS ++++ ++ GLE   G+KL  R  R ++LT+ G+
Sbjct: 4   FSDMTLFASIVKNQGLAAAGRELGLSPATVTARLQGLEERYGVKLLNRSTRHISLTDSGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+   E+   +  T+  LQ    +  G L+I+   D+G+  +   L EF  L+P++  
Sbjct: 64  MYHQACLEIIDSVNETENLLQTGMKEVRGTLKISAPRDIGKQYISPLLSEFSQLHPEVVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L++   +++    D  IR  + +  S+LI RKL +      A+P YL     P++  
Sbjct: 124 YLYLNDHLSNLAESGLDVVIRYGE-LADSNLISRKLASSRRVLCASPQYLAKRGTPITPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSG 240
           +L +H+ +     + +  E+       D   G+ R+  +    +      I Q+ + G+G
Sbjct: 183 DLAQHDCLA----MVRSNEELKTWHFQDE--GQHRVITVAPKRFSDDGEVIRQWALDGAG 236

Query: 241 IAL 243
           IAL
Sbjct: 237 IAL 239


>gi|160896839|ref|YP_001562421.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362423|gb|ABX34036.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 305

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 128/253 (50%), Gaps = 11/253 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  SG+ + AA +L ++++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDLNSLTLLVEIIDSGNLSQAARKLKMTRANVSYHLTQLEKSVGVQLVRRTTRRVEPTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +++     + +++ + +  +       +G++ ++     GQ ++   L EF  LYP I
Sbjct: 61  GMRMYEHGRAIQNEMMSARETITSLGQGMAGRVGLSVPSGYGQIVMSDWLIEFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSS--SLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++ +N+  D   D  D AIR+   IQ    S+I R L  +H  A A+  Y +    P
Sbjct: 121 VLDVLFENR-ADHLRDEVDIAIRV---IQEPPLSVIARSLGNVHYVACASREYAQQHGLP 176

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239
            ++ EL    LIT G ++ + +    +  T DR   E  ++   ++ +   ++  +L G 
Sbjct: 177 TTLYELRNSPLITAG-VMGRQLRLSAYQGT-DRQ--EVLLAPTMISEHFPFLRQGILAGL 232

Query: 240 GIALLPDYIVKDN 252
           G+ L+PDY+V+D 
Sbjct: 233 GVGLVPDYVVQDK 245


>gi|15838369|ref|NP_299057.1| LysR family transcriptional regulator [Xylella fastidiosa 9a5c]
 gi|9106842|gb|AAF84577.1|AE003999_5 transcriptional regulator (LysR family) [Xylella fastidiosa 9a5c]
          Length = 313

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 121/272 (44%), Gaps = 7/272 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR+ SFT AA QL LS+S++S  +  LE  +G++L  R  R ++ TE G++
Sbjct: 24  NDLQAFVAVARARSFTRAAAQLGLSRSALSHAMLALEARLGVRLLTRTTRSVSTTEAGAR 83

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    ++E     L  +  KP+G +RI         +L   L   L  YPD+ ++
Sbjct: 84  LLDAVAPRLDEIELELGSLSAARDKPAGTVRITAHDHAISTVLWPRLLPLLRDYPDVHLE 143

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             +D    DI+    D  +R+   +    +  R    + M   A+P YL     P +  E
Sbjct: 144 FSVDYAFTDIAAHRFDAGVRIGDRVDKDMIAVRIAPDLLMAVAASPEYLAGRPHPRTPHE 203

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H  I     +P     + W    D      R+      N+   ++Q  + G G A +
Sbjct: 204 LTEHRCINL--RLPTHGGLYAWDFEKDGEAVNVRVGGQTTFNNTFLMLQAALDGMGFAFV 261

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           P   ++   +   LV +++D   P+F  Y  Y
Sbjct: 262 PLDTMQAHIEAGRLVPVLQD-WWPTFPGYHLY 292


>gi|15965088|ref|NP_385441.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307315058|ref|ZP_07594643.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|15074268|emb|CAC45914.1| Putative transcription regulator [Sinorhizobium meliloti 1021]
 gi|306898897|gb|EFN29547.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 313

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 132/296 (44%), Gaps = 21/296 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V +   F+ AA  L++ +S +S+ ++ LE ++G++L  R  R L +TE G
Sbjct: 3   DLNDIALFAAVVKHNGFSAAARDLNVPKSKLSKHVARLEEQLGVRLLERSTRKLRMTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   +   + E+     +P+G +R+A  I     +L   L  F   YP ++
Sbjct: 63  RIFYEHAQGLLDGVAAAEAEIAAVRAEPTGVVRLACPIGF-TPMLADILPAFHRRYPGVR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS-LIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ ID+  +  D A+R R  + + S LI RK   +     A+P  L    E ++
Sbjct: 122 LLITASNRRIDLIEERIDVALRARDQLDTDSQLIVRKFGEVRQRLAASPTLLARLGE-IT 180

Query: 183 IQELDKHNLITFGDLIPK-----CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
              L +   ++  +  P             +    RP+    + C   + +L + +  + 
Sbjct: 181 TDNLSQMPTLSMNEQHPNDVWRLVHATGGAIEIAHRPV----VGC---SDFLILERAAIE 233

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIALLPD+I +       LV ++ +  + +  V+  +P      G L A R  I
Sbjct: 234 GMGIALLPDHICERAFRTGALVPVLPEWTSGNVMVHLVFP---SRHGLLPATRALI 286


>gi|330986891|gb|EGH84994.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012016|gb|EGH92072.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 302

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 132/300 (44%), Gaps = 27/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AA +L L+Q ++ RQI GLE  +G++LF R  RG+ LTE G    R  
Sbjct: 14  FEAAARHESFTKAAHELSLTQGAVCRQIGGLEEFLGVELFRRSRRGVKLTEAGLSYSRRV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL---- 126
           ++    +E   + +     + +  + +A     G   L   LK+F   +PD+ + L    
Sbjct: 74  AQQLDAVERDTLSVM--GQQGANAIELAVVPTFGTQWLLPRLKDFQHKHPDVTVHLTNRT 131

Query: 127 ---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +  + D D ++ + D           S     +L+  +     +P +L N R+ L  
Sbjct: 132 RPFLFADTDFDAAIYFGDA--------DWSGTQSHRLMGENSMPVCSPSFL-NGRDHLQA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL +  L+          + FN     V R +  PR     +     + Q  +   G+A
Sbjct: 183 SELAELPLLQQTTRPYAWRQWFNAQGMDVARDMTGPRYELFSM-----LAQAAMHDMGVA 237

Query: 243 LLPDYIVKDNPNLVR-IMEDVIT-PSFTVY-FCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           L+P ++++   +  R ++ +V + P    Y    PE    +  L AFR+++  +AR+++ 
Sbjct: 238 LIPPFLIQRELHEKRLVIANVCSLPGSKAYHLMIPERKVESASLSAFRDWLVAQARNYQL 297


>gi|260550245|ref|ZP_05824458.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406773|gb|EEX00253.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 324

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 126/269 (46%), Gaps = 22/269 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G 
Sbjct: 20  FDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLGQ 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +V  ++E  +  L     +P G ++++    +    ++  L +FL  YP ++I
Sbjct: 80  EFYEECCKVIAQVECAENVLLRQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVEI 139

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R     
Sbjct: 140 SLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RTIEHY 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-------ATVDRPIGEPRISCLQVNS-YLSIMQYC 235
            EL +   I+ G       +++ W         +VD P  +PRI    +   Y S+M   
Sbjct: 199 SELQEFPSISLGTQ----KQNYIWHLCNIRNGESVDVPY-QPRIKSNDLAGVYYSVMD-- 251

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMED 261
             G GIA LP   V+       LV I+ D
Sbjct: 252 --GLGIAELPFLTVESEIRKGTLVHILPD 278


>gi|62259512|gb|AAX77858.1| unknown protein [synthetic construct]
          Length = 343

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 134/311 (43%), Gaps = 49/311 (15%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++F  V   G+ + A  + +LS +SIS +I+ LE     KL  R  R +  T+ G KL
Sbjct: 32  ELKLFVAVINYGNLSAAGREFYLSPASISNKINALEEYYQTKLLIRTTRKIEPTKAGEKL 91

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++  +LE  Q ++Q +     G ++I    DLG+ ++   L EF    P+IQ  +
Sbjct: 92  YTTAIKLLEQLENLQEDIQNNENSAEGVIKITIPFDLGKQIILPILDEFKEKNPNIQYDI 151

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +  +    D AIR    +  S+ I +KLV  +    A+P YLK     + I   
Sbjct: 152 NLSDDVMSYNQFPFDIAIRYGN-LPDSNFIAKKLVDNYRMLCASPEYLKK----MDISNT 206

Query: 187 DKHNLITFGDLIPKCMEDFN----WLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSG 240
           D  N++   D I   +        +L   +    E  I  S +  N Y+S  Q C+ G+G
Sbjct: 207 DDINILQNCDFITLKINSNTIKKWYLIDQENNKHEVNIKPSYIVNNGYIS-RQMCLNGNG 265

Query: 241 IA------------------LLPDYIV----KDNPN---------------LVRIMEDVI 263
           I+                  +LP+Y V    KD P+                +R++   I
Sbjct: 266 ISEKSYWDVKQDLKSGKLVQVLPNYRVTLNKKDKPDNMISLLYPSDQFQPYRIRMLSKFI 325

Query: 264 TPSFTVYFCYP 274
             SF+ +  YP
Sbjct: 326 VDSFSKFKSYP 336


>gi|240141342|ref|YP_002965822.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
 gi|240011319|gb|ACS42545.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
          Length = 301

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 133/295 (45%), Gaps = 16/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA SG F  AA  L +S ++++R ++ LE  +G +LF R  R + LTE G +  
Sbjct: 7   MRVFVRVAESGGFAGAARALSMSPAAVTRAVAALEAVIGARLFIRTTRSVKLTEAGGRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +     S+  P+G L +   +  G+  +   + ++L  +P + ++ +
Sbjct: 67  EDCRRILAEIAEAEAAAAGSTATPTGVLTLTAPVQFGRLYVLPVVTDYLTRHPAVTVRAL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  +  D  +R+   +  S L   ++ ++     AAP YL+    P + ++L 
Sbjct: 127 FLDRIVNLIEEGIDVGVRIGH-LADSGLTATRVGSVRRVVCAAPSYLERHGVPETPRDLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H +I  G   P  + ++ +       +G   R+ C   N+  + +   + G GIA L  
Sbjct: 186 DHAVI--GASNPGTLPEWRFGPEGRTTVGVHARLVC---NTVDAALAAALDGWGIARLLS 240

Query: 247 YIVKD--NPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           Y V        +RI+    E+   P   ++   P   +   K +AF +    + R
Sbjct: 241 YQVASAVAEGRLRILLTDDEEAPVP---IHVVSPGGRRAPAKTRAFVDLAAARLR 292


>gi|118587703|ref|ZP_01545113.1| probable beta lactamase transcriptional activator [Stappia
           aggregata IAM 12614]
 gi|118439325|gb|EAV45956.1| probable beta lactamase transcriptional activator [Stappia
           aggregata IAM 12614]
          Length = 289

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 129/294 (43%), Gaps = 20/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT A  +L +SQ+++S Q+  LE  + + LF R  RG+ LT++G  
Sbjct: 9   NALRAFEASARLCSFTRAGLELRVSQTAVSHQVKTLEDVLQVSLFERLPRGVALTDEGLA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V ++ + ++       ++ + +    L +          L   L  F  ++P I ++
Sbjct: 69  LLPVLTDAFRRMSEALSRFEDGNYREV--LTVGAVATFATGWLLPRLAGFAKVHPQIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N   DI  D  DC +R       ++  + KL+   +    +P       EP     
Sbjct: 127 LKTNNNRADILADGLDCFLRFGDGAWHATNAE-KLMDAPLSPICSPEAAPRLSEP----- 180

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
               +L+    L    M+++  W      P   PR      +S L++++    G+G+AL+
Sbjct: 181 ---ADLVNEPLLRSYRMDEWAMWFQAASLP--PPRARGWMFDSSLAMVEAVTQGAGVALV 235

Query: 245 PDYIVKDNPNLVRIME----DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +     +   I++     V+T S+  +  + ++ + T  ++ FR ++   A
Sbjct: 236 PTSMFSRQLSSGAIVQPFKTSVLTGSY--WLTWLKSREETSAMRKFRQWMLETA 287


>gi|260767262|ref|ZP_05876203.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           furnissii CIP 102972]
 gi|260617770|gb|EEX42948.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           furnissii CIP 102972]
 gi|315180893|gb|ADT87807.1| DNA-binding transcriptional activator GcvA [Vibrio furnissii NCTC
           11218]
          Length = 310

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 135/300 (45%), Gaps = 25/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  L     +L E S K  G L I+         L   L +F    PDI ++
Sbjct: 69  YFLDIKDIFGSLAEATDKLLERSEK--GALTISLPPSFAIQWLVPRLADFNQQEPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + +     D  D AI   R   P +++  L Q  L+ +      +P  L   +   
Sbjct: 127 IKAVDMEEGSLTDDVDVAIYYGRGNWPGLRADKLYQEFLIPL-----CSPSLLLGSKPLA 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++ +L  H L+   D   K  + F   N L +V+   G P  S   +     ++Q    G
Sbjct: 182 TLSDLSYHTLLH--DTSRKDWKQFAKENGLESVNVNHG-PIFSHSTM-----VLQAAAHG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+AL  + + +   D   LV   ++V+      Y    E   + G++  FR+++  KAR
Sbjct: 234 QGVALGNNVLAQPELDAGRLVAPFDEVLMTKNAFYVVCHEKQADMGRIATFRDWMLKKAR 293


>gi|255293126|dbj|BAH90219.1| LysR family transcriptional regulator [uncultured bacterium]
          Length = 295

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 14/255 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +R F  + R GS+  AAE   +  S++ R+I  LE   G  LF R   G   +   +
Sbjct: 11  WDLIRAFLALERHGSYEVAAELEGIDDSTLRRRIRLLEQHFGRALFVRAEGGWRAS---A 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+ + S    ++E       +     +G +RI + +D+           F   YP +  
Sbjct: 68  DLNALISAA-QRMEEAARSFCQDHHAGAGVIRI-SVMDVFAQRFAPVFAAFSEKYPKLVF 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQ-RKLVTIHMHAYAAPHYLKNCREPLSI 183
            +  +   +++  D  D A+RL +P ++S+ ++ RKL  + + AYA+  YL+   E    
Sbjct: 126 TITTEAHFVNLEQDQVDIAVRLARPERNSNALRVRKLGDVAVGAYASDAYLRRAAELAH- 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              + H L+     +    +D +++ A++D    G      LQ +S+  + Q C LG G+
Sbjct: 185 ---ENHQLLAMN--LQFFHQDHHFIYASLDWSRFGLSGQVRLQSDSFAPLAQLCALGQGL 239

Query: 242 ALLPDYIVKDNPNLV 256
           ALLP ++  + P LV
Sbjct: 240 ALLPKFLAAEYPQLV 254


>gi|145300274|ref|YP_001143115.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853046|gb|ABO91367.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 300

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 76/143 (53%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  FY V + GSF+ AA+ L +S+  +SR +S LE  +  +L  R  R L+LTE 
Sbjct: 2   MDIAHLASFYEVVQRGSFSAAADVLGVSKGMLSRHVSALEAALNAQLLQRTTRRLSLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+  T +++  +   + ++Q  + + +G+LR    +  G  ++   L  F +L P +
Sbjct: 62  GKTLYLQTGQIFALVRQAEEDIQALTEEDAGRLRFTCAVSTGDRMVSELLGHFAVLCPGV 121

Query: 123 QIQLILDNKDIDISMDYADCAIR 145
           +++L   N  +D+S    D A+R
Sbjct: 122 EVELNFTNAMVDMSQGENDIALR 144


>gi|53721595|ref|YP_110580.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|254182316|ref|ZP_04888911.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254264408|ref|ZP_04955273.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|52212009|emb|CAH38016.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|184212852|gb|EDU09895.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254215410|gb|EET04795.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 299

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 13  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G   + T        L   L +     P + ++++
Sbjct: 73  AAVRQSLDALRAATADIR--SRRANGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 130

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
             ++DID   ++AD AI           S+ L Q  +  +   A+   H          R
Sbjct: 131 T-SQDIDPQREHADVAILFGAGDWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLLR 189

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 190 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 238

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 239 NQGVALGWAPLV-DTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 295


>gi|76817491|ref|YP_336940.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|237508034|ref|ZP_04520749.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|254263228|ref|ZP_04954093.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|76581964|gb|ABA51438.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|235000239|gb|EEP49663.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|254214230|gb|EET03615.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 298

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 127/301 (42%), Gaps = 34/301 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F   A+  +F++AA +L L+ S++SRQI+ LE  +G+KLF R  R L LT  G   
Sbjct: 10  ELHAFASSAKHLNFSYAARELGLTPSAVSRQIASLEALLGVKLFVREGRNLALTRAGQVY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++    +EL  S+ + S  L IA+        L   L  FL   PDI +  
Sbjct: 70  QARVAGPLREIGNASLELL-SAREDSNLLTIASVPTFTTKWLVPRLPRFLETAPDITLSF 128

Query: 127 ILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
                  D+     D AIR      + +Q   L  R  V +    +A  H L   REP  
Sbjct: 129 RRHLAPGDLFPLGLDAAIRYGDGRWEGVQCDYLDGRTFVPVCAPGFAERHAL---REPAD 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYC 235
           I    +        L+ +  E   WLA  DR        +  PR        Y  ++Q  
Sbjct: 186 IAAAPR--------LVHEQAE-CAWLAWADRHRATQMNALAGPRF-----EQYSVLIQAA 231

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP----SFTVYFCY-PEALKNTGKLKAFRNFI 290
             G GIAL+P ++++       +++ +  P      + Y CY PE L+ +  L+  R ++
Sbjct: 232 QAGLGIALIPAFLIRAPLAAGTLVQPLDAPVDVDEQSHYLCYAPERLQASASLRLLREWM 291

Query: 291 F 291
            
Sbjct: 292 L 292


>gi|332288250|ref|YP_004419102.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
 gi|330431146|gb|AEC16205.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
          Length = 301

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 142/307 (46%), Gaps = 19/307 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L +F  +    S + AA+ L+L  S++SR +S LE ++   L     R + LT
Sbjct: 1   MKLNLEALNIFVQIVEKKSISAAAQSLNLPISAVSRSLSKLENDLETTLLQLSTRRMYLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L +   ++   ++  + +L        G LRI T+  + +++L   + EFL  Y 
Sbjct: 61  AEGELLLQQARQILDSVQIAEEKLLARHTDAGGLLRINTSAPVMRHVLIPAMAEFLQRYS 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  ++  ID+  +  D AIR+ + +Q SS+  R L    +   A P YL    E 
Sbjct: 121 RIQLELNSNDSLIDLLEERTDVAIRVGE-LQDSSMHARLLGKSAIRILATPQYLAKQGEI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L +H L+ F    P  +  +  L      +   P +      S L++  + V   
Sbjct: 180 HNVHQLLQHRLLGFSR--PAHLNQWPLLDNSGHLLTITPSVIASSGESLLALALHHV--- 234

Query: 240 GIALLPDYI---VKDNPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI-- 290
           G+  L D +    + N  LV I+ D    ++ P + VY+ + +    + ++    +F+  
Sbjct: 235 GVVCLSDMMTEQARKNGELVEILPDLRQKILQPIYAVYYRHRQL---SARVALLIDFLSE 291

Query: 291 FLKARDW 297
           +L  +DW
Sbjct: 292 YLPKQDW 298


>gi|307312309|ref|ZP_07591944.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306899478|gb|EFN30109.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 310

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 2/179 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +GSF+ AA  L  + S++S+ ++ LE ++G +LF R  R L LT+ G    
Sbjct: 23  LMAFVRTVEAGSFSAAARDLGTTPSAVSKGVARLEKKIGTRLFLRSTRALMLTQDGQLFF 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L  ++ E   S + PSG+LRI+   ++   LL      F   YP++ I++ 
Sbjct: 83  DRVAPLLRDLGASE-EAIRSDIAPSGRLRISMPNEMAPLLLPRLFGSFAADYPNLHIEVG 141

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +D+  +  D A+R+        ++ R L  + M    +P +LK    P + + L
Sbjct: 142 LTDRFVDLIREDYDVALRVGNSAPGDYMV-RHLADLPMTIVGSPAFLKTWGNPATAEAL 199


>gi|258624379|ref|ZP_05719327.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258583341|gb|EEW08142.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
          Length = 323

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 136/300 (45%), Gaps = 25/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 23  NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQS 82

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  L     +L E S K  G L I+         L   L +F    PDI ++
Sbjct: 83  YFLDIKDIFSSLAEATDKLLERSEK--GALTISLPPSFAIQWLVPRLADFNQQEPDIDVR 140

Query: 126 LILDNKDIDISMDYADCAI---RLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + D     D  D AI   R   P +++  L Q  L+ +      +P  L   +   
Sbjct: 141 IKAVDMDEGSLTDDVDVAIYYGRGNWPGLRADKLYQEFLIPL-----CSPALLLGNKPME 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++++L  H L+   D   K  + F   N L  V+   G P  S   +     ++Q    G
Sbjct: 196 TLRDLSFHTLLH--DTSRKDWKQFAKENGLDNVNVNHG-PIFSHSTM-----VLQAAAHG 247

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+AL  + + +   D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 248 QGVALGNNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 307


>gi|221214833|ref|ZP_03587802.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221165372|gb|EED97849.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 313

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 18/244 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V R  S T AA+ L ++QS++SRQI  LE  +G+ L  R  R +  T +G +
Sbjct: 12  DLVRGFVAVGRRMSITLAAQDLCVTQSAVSRQIHALEAHLGVALLRRGYRTIAFTPEGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R      H L+ T   L  +  +    + I  +I +    L   L      +PD+ ++
Sbjct: 72  LFRAADAALHSLQDTVASL--AVARERQPVTITASIGVTALWLLPRLGGLQARFPDVDLR 129

Query: 126 LILDNKDIDISMDYADCAIRL----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  ++K +D+  +  D AIR     R P  +  L    ++ +   A AA       R  +
Sbjct: 130 VAANDKVLDLRAEGIDLAIRYCPRDRAPAGALRLFDEIVLPVAHPALAA-------RPLV 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRI-SCLQVNSYLSIMQYCVLGS 239
               L +H L+ F D  P+      W A +    +G+ R    L+ N Y  ++Q  + G 
Sbjct: 183 DAAALAEHVLLEF-DGPPQAQ--LQWQAHLHAAGLGDARPKGVLRFNQYDQVIQAAIAGQ 239

Query: 240 GIAL 243
           G+AL
Sbjct: 240 GVAL 243


>gi|78061038|ref|YP_370946.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968923|gb|ABB10302.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 327

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 1/176 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT 
Sbjct: 26  GYRFELMETFVRIVEAGSLSAAAAQLHTTQPTISRRLQALERSLGMRLLQRTTHTMRLTV 85

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   E+       + +L+ +  +P G LR+A     GQ      L  FL  YP 
Sbjct: 86  DGERCFKRAKELLANWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVEPLARFLRDYPR 145

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           + ++ +L ++  D      DCAI++ +P    +++  +L  +     AAP  L   
Sbjct: 146 VSVEWLLQDEVRDFVGSGIDCAIQVGEPTD-PAVVAIRLSKVPRFVVAAPSVLNGA 200


>gi|323528879|ref|YP_004231031.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385881|gb|ADX57971.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 299

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 120/257 (46%), Gaps = 18/257 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G  
Sbjct: 8   NALRAFESSARHLSFTRAALELNVTQAAVSQQVRSLEERLGTALFKRLPRGLAMTDEGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V ++ + ++E    + +         + +  T  +G   L   LK F   +P ++++
Sbjct: 68  LRPVLTDAFDRIEAVLKQFEGGHFHEVLTVGVVGTFAVGW--LMPRLKSFREAHPFVELR 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N  +D++ +  D AIR        SL  R L+   +     P   +   +P  +  
Sbjct: 126 LLTNNNLVDLATEGLDFAIRFGDGTWPGSLATR-LLDAPLALLCTPEIAERLSKPADLA- 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            D+  L ++     +  +  +W A      RPI  P       +S   +++  + G+GIA
Sbjct: 184 -DETLLRSY-----RPDDWSSWFAAAGIAPRPIRGP-----VFDSSRLMVEAAMQGAGIA 232

Query: 243 LLPDYIVKDNPNLVRIM 259
           L P  +     N  R++
Sbjct: 233 LAPALMFDHEINTGRLV 249


>gi|190150118|ref|YP_001968643.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307263454|ref|ZP_07545069.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915249|gb|ACE61501.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871097|gb|EFN02826.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 295

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 136/304 (44%), Gaps = 26/304 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  G
Sbjct: 2   DLNNLRLFVAVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTALG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQE---SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +L+    +VY  L+      QE      + SG LRI+T        +   + EF   YP
Sbjct: 62  LQLYE---KVYLSLDNLTQATQEFIGEQQELSGYLRISTVS--ACEPIWAAIAEFQAEYP 116

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++     ++ +D+  D  D A R+   + + ++I RK++ ++    A P +L     P
Sbjct: 117 QVKVHCQATDRVLDLVEDGIDIAFRMGD-LHTENVIARKMMDLNAVLVAHPDFLARHGTP 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVL 237
            + Q+L       +     K        AT+   +GE  +    +   N   +I      
Sbjct: 176 KTPQDLTALPFACWARAGQKS-------ATLQ--LGEQAVKIEPIFTSNDVYAIAHQAKS 226

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FL 292
              I  LPDY+ +   +   LV +M D  T ++ ++  YP     +  +K F  F   FL
Sbjct: 227 AHAICQLPDYMAQELTEKFGLVELMSDYQTSTYPIHAIYPAHRHPSAIMKTFLGFCERFL 286

Query: 293 KARD 296
             R+
Sbjct: 287 AERE 290


>gi|89056643|ref|YP_512094.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88866192|gb|ABD57069.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 304

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 129/297 (43%), Gaps = 33/297 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            R F   AR+ SFT AA++L L+QS+IS+Q+  LE  +G+ LF R  RGL LT++G  L 
Sbjct: 31  FRSFEASARTLSFTAAADELGLTQSAISQQVRSLELRLGVALFVRKPRGLILTDEGRTLQ 90

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +L     E +    +  G L +A ++ + + ++   + EF    P ++I+L+
Sbjct: 91  PKVGASLDQLGRATAEFETGPTE--GLLTVAASVSVVRWIIAPRMTEFTRQIPGLRIRLL 148

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ----SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                 +     AD  IR     Q    ++ L    L+ +     A P   +   EP+ +
Sbjct: 149 GMIWPDEFKAALADVEIRFGSDRQVGRDATRLGPDALIAVAARPLAGPLAAQTLIEPVGM 208

Query: 184 QELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            E  +    T G + +P                 EP    L V+S+ + +   V G+G+A
Sbjct: 209 SEGWRDWAKTSGVEGVP-----------------EP---TLFVDSHGAALDLAVGGAGVA 248

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L    +        +LV++  D   PS   Y     A   + + KAF +++   ARD
Sbjct: 249 LTSSLLAARALAQGDLVQV-HDATIPSTQGYHLAVTA--PSAEAKAFGDWVTECARD 302


>gi|254501732|ref|ZP_05113883.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222437803|gb|EEE44482.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 307

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 131/300 (43%), Gaps = 24/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS- 64
           D L  F   AR  SFT AAE+LHL+Q ++S+Q+  LE  +G++LF R  + + LT+ G  
Sbjct: 10  DTLIAFECAARHLSFTRAAEELHLTQGAVSKQVRQLEDRLGVELFRRVRQRIVLTDAGRL 69

Query: 65  KLHRVTSEVYH-KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            LH +   +    L T Q+    S    +  L +A     G   L   + +F+  YPD  
Sbjct: 70  YLHDIRGALEQMTLATRQV---MSFAGSADVLNLAVLPTFGTRWLAPRISDFIRRYPDAG 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS----LIQRKLVTIHMHAYAAPHYLKNCRE 179
           + L +  +  D   +  D AI    P+ + +    L   +++ +    +   H   N R 
Sbjct: 127 LNLSVRLQPFDFDEEPFDGAIHHGDPVWAGAIAEHLFDEEVIPVASRVFRDRH---NIRV 183

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  +  + +  L T      + +   +W  +      +      +   ++ I +  +  +
Sbjct: 184 PEDLTRVPRLQLAT------RPLAWRHWFESAGVET-DAAFQGARFEQFVMITEAAIHHA 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVY-FCYPEALKNTGKLKAFRNFIFLKAR 295
           G AL+P + ++    +  LVR+  DV     T Y F YPE       + AFR ++  +AR
Sbjct: 237 GAALIPRFFIEQELASGRLVRLF-DVPPEHETAYFFVYPEGRTMRPVVAAFRKWLAEEAR 295


>gi|91228835|ref|ZP_01262741.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|269964680|ref|ZP_06178918.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91187606|gb|EAS73932.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|269830579|gb|EEZ84800.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 315

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 132/302 (43%), Gaps = 9/302 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D+  L +F    R  S T  A +L+L +S++S+ I+ LE     KL  R  R L +TE
Sbjct: 8   TIDFRTLSIFVTSCRLLSLTKCALELNLPKSTVSKAITKLEQHFEAKLLERTTRKLVITE 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +    + +  +  +   ++QE   +  G+LRI+    L   + +     FL  +P 
Sbjct: 68  AGQMVLERAASLVEEFHSIGHDVQEMEQQIQGRLRISAPPALDAYMAEHIFLPFLKQWPK 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI L   N  +D+     D AIR+ + I    LI +KL        A+P YL     P 
Sbjct: 128 VQIALEASNDFVDLFSHGFDMAIRVGQ-IVDDRLIAKKLGYTTRVLAASPEYLAEFGVPE 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + ++L KHN + +  +     E   W L + D  +     S     +  +I++  + G G
Sbjct: 187 TPEDLTKHNCLRYQYV----SEIGPWTLISHDNTVNVSITSNFSSTTVEAILKGALKGLG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LP   +    ++  LVR++    T    +Y  Y        +++A  + I      +
Sbjct: 243 IANLPVQNMTQELESGTLVRVLPQWHTVPMPIYLVYRPGANRPRRVQAMIDHIMSLRSQF 302

Query: 298 KF 299
           +F
Sbjct: 303 EF 304


>gi|254505464|ref|ZP_05117611.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219551581|gb|EED28559.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 313

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 115/247 (46%), Gaps = 9/247 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  SG F+ AA+ L +  + +SR +  +E ++G+ +  R  R + LT++G +
Sbjct: 26  DDLEILLAVVDSGGFSAAADTLDIQVARVSRAVGKVEKQLGVSILNRTTRRIELTDEGRQ 85

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +++  + EL      P G+LR+        + L   + +F   YPDI+++
Sbjct: 86  FIDSIRLGLTQIQRAEEELISRGELPKGRLRVDAASPFVLHQLVPLIGDFQAQYPDIELE 145

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ + +  S+L  R L    +H  A+P YL    +P +  +
Sbjct: 146 LSSNEGFVDLLEKKTDVAIRIGQ-LSDSTLHARPLGRSQLHLVASPDYLAKRGQPHTTAD 204

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I F    PK +    W     + + +P    L  ++  ++ Q  + G+GIA L 
Sbjct: 205 LIHHATIGFSG--PKALN--QWPLKGFQSL-QP---TLTSSNGEAVRQLALAGNGIACLS 256

Query: 246 DYIVKDN 252
            ++V  +
Sbjct: 257 GFMVNSD 263


>gi|325122108|gb|ADY81631.1| putative LysR family transcriptional regulator [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 283

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 19/189 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      L+ F   AR GSF  AAE+L L+ ++IS  ++ LE+ + + LF+R  R +TLT
Sbjct: 1   MQVSLQALKAFESAARLGSFKLAAEELSLTPTAISHHVANLESRLNVDLFHRQVRKITLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L    SE + K+E     L E +V     +R+A+T  L   LL  ++ EF  L+P
Sbjct: 61  TTGQRLAAAISEGFRKIEDA---LDEITVN-GNVVRVASTSSLAAMLLIPSINEFYQLHP 116

Query: 121 DIQIQL----ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH--YL 174
           +I ++      LDN    + + Y D ++     +QS  +++ +      + + +P    L
Sbjct: 117 NISVEFSTGETLDNHLYTLPIRYGDVSL-----VQSQDIVKYE----SFNVFGSPKLDLL 167

Query: 175 KNCREPLSI 183
           K   EP+++
Sbjct: 168 KCSSEPITL 176


>gi|298489401|ref|ZP_07007412.1| Glycine cleavage system transcriptional activator [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298155975|gb|EFH97084.1| Glycine cleavage system transcriptional activator [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 302

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 129/300 (43%), Gaps = 27/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AA +L L+Q ++ RQI GLE  +G++LF R  RG+ LTE G    R  
Sbjct: 14  FEAAARHESFTKAAHELSLTQGAVCRQIGGLEEFLGVELFRRSRRGVKLTEAGLSYSRRV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL---- 126
           ++    +E   + +     + +  + +A     G   L   LK+F   +PD+ + L    
Sbjct: 74  AQQLDAVERDTLSVM--GQQGANAIELAVVPTFGTQWLLPRLKDFQHKHPDVTVHLTNRT 131

Query: 127 ---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +  + D D ++ + D           S     +L+  +     +P +L N R+ L  
Sbjct: 132 RPFLFADTDFDAAIYFGDA--------DWSGTQSHRLMGENSMPVCSPSFL-NGRDHLQA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL +  L+          + FN     V R +  PR     +     + Q  +   G+A
Sbjct: 183 SELAELPLLQQTTRPYAWRQWFNAQGMDVARDMTGPRYELFSM-----LAQAAMHDMGVA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           L+P ++++       LV      ++ S   +   PE    +  L AFR+++  +AR+++ 
Sbjct: 238 LIPPFLIQRELHEKRLVIANACSLSGSKAYHLIIPERKVESASLSAFRDWLVAQARNYQL 297


>gi|269963748|ref|ZP_06178066.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831481|gb|EEZ85622.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 255

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 129/259 (49%), Gaps = 14/259 (5%)

Query: 47  IKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQN 106
           ++LF+R+ R  +LTE G+ L++  S +  ++E +   L E +  P+GKL++      G+ 
Sbjct: 1   MRLFHRNTRQFSLTEDGASLYQRVSPLLSEIEQSIDGLSEQNKNPAGKLKVNLPDSFGRK 60

Query: 107 LLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH 166
            +  ++ EFL LYP+I++ L+L ++ +D+  +  D ++   +  + S L+ R +  +   
Sbjct: 61  FVMPHIAEFLNLYPEIELDLVLSDRILDVVDEGFDMSVG-NQINEDSRLVARTIYQMQSG 119

Query: 167 AYAAPHYLKNCREPLSIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRIS 221
            +A+  Y++    P S+++L +HN I +     G      ++D +       PIG   +S
Sbjct: 120 IFASKEYVETFGLPRSVEDLHQHNCIVYRPLSSGRSYTWPLKDTHGEHVQFNPIGNLSLS 179

Query: 222 CLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALK 278
            +   + +++MQ+     GIA +  + V+   +  ++V I+E        V+  Y     
Sbjct: 180 NISA-AKIALMQHL----GIAFMGRWHVEEELEQGSVVPILESYWVEPKPVWIYYSSRDN 234

Query: 279 NTGKLKAFRNFIFLKARDW 297
              + + F +F+  K + +
Sbjct: 235 LPKRTRLFIDFMVEKLKSY 253


>gi|260556838|ref|ZP_05829055.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260409444|gb|EEX02745.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 324

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 130/269 (48%), Gaps = 22/269 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G 
Sbjct: 20  FDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLGQ 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +V  ++E  +  L +   +P G ++++    +    ++  L +FL  YP ++I
Sbjct: 80  EFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVEI 139

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L++ R     
Sbjct: 140 SLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQD-RTIKHY 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-------ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            EL     I+ G       +++ W         +VD P  +PRI     ++ L+ + Y V
Sbjct: 199 SELQDFPSISLG----TQKQNYIWHLCNIRNGESVDVPY-QPRIK----SNDLAGVYYAV 249

Query: 237 L-GSGIALLPDYIVKDN---PNLVRIMED 261
           + G GIA LP   V+       LV I+ D
Sbjct: 250 MDGLGIADLPFLTVESEIRKGTLVHILPD 278


>gi|238750921|ref|ZP_04612418.1| Transcriptional regulator [Yersinia rohdei ATCC 43380]
 gi|238710835|gb|EEQ03056.1| Transcriptional regulator [Yersinia rohdei ATCC 43380]
          Length = 300

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 141/304 (46%), Gaps = 13/304 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRGQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLGHARQILGAVDDAEEQIALRQLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRI-GALRDSTIHARLLGASRVRILASPDYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +I EL  H+L+ F        E  N  +    P G   I+  L  +S  ++    + G 
Sbjct: 180 QTIDELANHSLLGFTQ-----PEFLNQWSLPHLPGGRSSITPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVY----FCYPEALKNTGKLKAFRNFIF--LK 293
           GI  L D++ +++    R++E + + +   +      Y    +   ++  F +++   +K
Sbjct: 235 GIVELSDFMTREDQLAGRLVEVMASQTLETWQPINAVYYRNTQLAARITCFLDYVSEQIK 294

Query: 294 ARDW 297
             DW
Sbjct: 295 GSDW 298


>gi|213970942|ref|ZP_03399064.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301386214|ref|ZP_07234632.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060059|ref|ZP_07251600.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134441|ref|ZP_07260431.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213924318|gb|EEB57891.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 302

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  +A   SFT  A  + LS ++++R ++ LE+ +GI L  R  R + LTE G + 
Sbjct: 6   EMTLFAALAGQTSFTGVARHVGLSTATVTRAVASLESRLGILLVVRTTRNMRLTEAGQRF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L   +         P+G L +      G   +   L  FL  YP + I+ 
Sbjct: 66  AEDCRRLLADLAEAENAAAGVHALPAGTLTVTAPQMFGALHVTPVLTRFLSEYPAVDIRA 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL ++ + +  +  D A+R+   ++ SSL   ++ ++     A+P YL     P    +L
Sbjct: 126 ILVDRVVSMLDEGVDVAVRI-GALRDSSLTAIRVGSVRRMVCASPVYLAQHGTPRHPDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H  I+     P+     +W   VD       ++  L + S+ + +   +   G+  +P
Sbjct: 185 QQHATISTS--APE--RPPHWAFRVDDQDYSVNVASRLSLTSFQASINAALQHWGLTQVP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            Y +++   N  LV ++ED       V+  Y E  + + ++++F +F     R+
Sbjct: 241 HYQIREHLQNGRLVCVLEDFEIAPEPVHVVYSEGRRGSSRVRSFVDFCVSALRE 294


>gi|169797067|ref|YP_001714860.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213156526|ref|YP_002318187.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215484529|ref|YP_002326764.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301347562|ref|ZP_07228303.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301512332|ref|ZP_07237569.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301596442|ref|ZP_07241450.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332856139|ref|ZP_08436147.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332867375|ref|ZP_08437575.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149994|emb|CAM87888.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|213055686|gb|ACJ40588.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213988780|gb|ACJ59079.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332727160|gb|EGJ58618.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332734021|gb|EGJ65160.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 287

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 114/250 (45%), Gaps = 12/250 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  +V   + R+G  + +A+ L +S S++ R+   LE  +   LF R + G TLT  
Sbjct: 1   MNWDDTKVLLAIGRTGGLSRSAKLLGISVSTVHRRAVELEKSLNATLFSRDSDGYTLTHV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKL-RIATTIDLGQNLLQGNLKEFLLLYPD 121
           G     +      K E   I ++  + +    L RIA    +GQ LLQ  L    L +PD
Sbjct: 61  GKHFFSLA----EKAEEHLIAMERYNDQGQQSLFRIALPELIGQQLLQSKLTALQLKHPD 116

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+++      +D S   AD  +RL +P +S   I R+L  +    Y +  YL + +E  
Sbjct: 117 LQLEISTSVVPVDFSRREADIILRLVRP-ESGRYIIRRLGQLEYGLYGSKDYLASFKEHA 175

Query: 182 SI-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H +I +   +      + +LA   R + +     L  ++  S +   + G G
Sbjct: 176 EMADDLLNHRIIGWDRSL-----QYTFLAQWMRELTQDAAPALSFDNMHSQLLAVIEGQG 230

Query: 241 IALLPDYIVK 250
           I  LP ++ K
Sbjct: 231 ITALPCFVAK 240


>gi|54310106|ref|YP_131126.1| DNA-binding transcriptional activator GcvA [Photobacterium
           profundum SS9]
 gi|46914545|emb|CAG21324.1| putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 302

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 132/298 (44%), Gaps = 23/298 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V+  +     ++ E   K  G L I+         L   L +F   +P+I ++
Sbjct: 69  YFLDIKDVFSAISEATDKVLERGAK--GALTISLPPSFAIQWLVPRLADFNEQHPEIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   + D     D  D AI   +    + L   KL   ++    +P  L   +   ++ +
Sbjct: 127 IKAVDLDEGSLTDDVDVAIYYGRG-NWTGLRADKLYQEYLLPVCSPMLLAGIKPLRTLSD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS------YLSIMQYCVLGS 239
           L  H L+   D   K  +++         +    ++ + VN          ++Q  V G 
Sbjct: 186 LKLHTLLH--DTSRKEWKNY---------VRHYELTDINVNQGPIFSHSTMVLQAAVHGQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIAL  + + +   D   LV   ++++      Y    E    TG+++AFR+++  KA
Sbjct: 235 GIALGNNVLAQPELDAGRLVCPFDEILMSKNAFYLVCQERQAETGRIQAFRDWVLAKA 292


>gi|238792649|ref|ZP_04636281.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238728005|gb|EEQ19527.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 298

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 4/194 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  +  +GS   AAE+  +  S+++R++  LE  +G +L +R AR +T T +G +
Sbjct: 3   DELALFVSIVETGSLRAAAEKASIPASTLTRRLQKLEQHLGCRLLHRSARRMTPTSEGWQ 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     + H L+    +L  +  + SG +RI    DL  + L      FL  YP+++++
Sbjct: 63  YYEQCRPLVHSLQQATAKLDVTLNQISGLIRILAPADLANDNLAPAWVSFLTRYPEVRLE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAPHYLKNCREPLSI 183
           L L+N   D+    AD AIR+    Q  SL+  K +  +  +   A+P YL     P S+
Sbjct: 123 LELNNYTQDLIGSGADVAIRVGA--QPDSLLNMKKLGHSKEILLVASPDYLAKNGVPESM 180

Query: 184 QELDKHNLITFGDL 197
             L   +L+    L
Sbjct: 181 DALRLRDLVISAPL 194


>gi|237801817|ref|ZP_04590278.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024676|gb|EGI04732.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 308

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 129/300 (43%), Gaps = 27/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AA +L L+Q ++ RQI GLE  +GI+LF R  RG+ LTE G    R  
Sbjct: 14  FEAAARHESFTKAAHELSLTQGAVCRQIGGLEAYLGIELFRRSRRGVKLTEAGLSYSRRV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL---- 126
           ++    +E   + +     + +  + +A     G   L   LK+F   +PD+ + L    
Sbjct: 74  AQQLDAVERDTLSVM--GQQGANAIELAVVPTFGTQWLLPRLKDFQHKHPDVTVHLTNRT 131

Query: 127 ---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +  + D D ++ + D           S     +L+  +     +P +L N R+ L+ 
Sbjct: 132 RPFLFADTDFDAAIYFGDA--------DWSGTESHRLMGENSMPVCSPSFL-NGRDSLAA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL +  L+          + FN     V R +  PR     +     + Q  +   G+A
Sbjct: 183 TELAELPLLQQTTRPYAWRQWFNAQNQDVARDMTGPRYELFSM-----LAQAAMHDMGVA 237

Query: 243 LLPDYIVKDNPNLVR--IMEDVITPSFTVY-FCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           L+P ++++   +  R  I      P    Y    PE    +  L AFR+++  +AR+++ 
Sbjct: 238 LIPPFLIQRELHEQRLVIANPRSLPDTKAYHLMIPERKVESASLSAFRDWLVGQARNYQL 297


>gi|94968383|ref|YP_590431.1| LysR family transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550433|gb|ABF40357.1| transcriptional regulator, LysR family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 296

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 116/258 (44%), Gaps = 14/258 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +LR F  VAR G+FT A+E  H++Q S+S+QI  LE E+G +LF R  R   LT  
Sbjct: 1   MEVHQLRYFCAVARHGTFTRASEVEHVAQPSLSQQILKLEAELGARLFDRLPRSAKLTVF 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  +L+  + EL E +    G++ +     +   LL   L    + +PD+
Sbjct: 61  GKAFLPNAERILRQLDEAKTELLEMTSNEKGEVTVGIIPTIAAYLLPKLLNGLSVRHPDV 120

Query: 123 QIQLILDNKDI------DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            +++  D   +      D S+D A  A+    PI  + L   +L     +A     + + 
Sbjct: 121 TVKISEDITPVLLQRLHDGSIDMAIAAL----PIPGTELASEELFEEKFYAVLPEKHRRA 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            R  +S+ +L++   +   +    C  D + +A  ++    P +   +   + +I+    
Sbjct: 177 SRASISLADLNREPFLLLKE--GHCFRD-SVIAACNQAAMSPSV-VFESGQFATILAMVS 232

Query: 237 LGSGIALLPDYIVKDNPN 254
            G G++ +P   V+ +P 
Sbjct: 233 AGMGVSAVPAMAVQPHPG 250


>gi|90421168|ref|ZP_01229069.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334545|gb|EAS48328.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 260

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  V+ +GS + A  +L LS+S +S +++ LE  +G  L  R  R LTLT+ G  
Sbjct: 5   DGLAAFVAVSEAGSISEAGRRLRLSKSVVSERLAELERSLGTILVRRTTRRLTLTDDGVA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      + H +E T  ++ +   K  G LRI+  +  G+  L   + +FL  +P I++ 
Sbjct: 65  LLDRAIGILHDVENTAADVAQRRGKLIGPLRISAPVTFGRMHLGPAICDFLAQHPGIELS 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD++ +D + D  D  IR    I  + L+  +L        A+P YL     P S+ E
Sbjct: 125 LVLDDRRVDPAADGYDAVIR-HGTIDDTRLVAWQLAPSLRLLVASPAYLDCWGTPRSLDE 183

Query: 186 LDKHNLITF 194
           L  H  I +
Sbjct: 184 LTSHRAIYY 192


>gi|53717106|ref|YP_105255.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|124382394|ref|YP_001024802.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126446644|ref|YP_001079143.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|254175825|ref|ZP_04882484.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|52423076|gb|AAU46646.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|124290414|gb|ABM99683.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126239498|gb|ABO02610.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|160696868|gb|EDP86838.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
          Length = 299

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 13  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGTRLF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G   + T        L   L +     P + ++++
Sbjct: 73  AAVRQSLDALRAATADIR--SRRANGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 130

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
             ++DID   ++AD AI           S+ L Q  +  +   A+   H          R
Sbjct: 131 T-SQDIDPQREHADVAILFGAGDWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLLR 189

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 190 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 238

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 239 NQGVALGWAPLV-DTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 295


>gi|254450090|ref|ZP_05063527.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198264496|gb|EDY88766.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 293

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 126/286 (44%), Gaps = 14/286 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W +LR  Y VA+ G+ + AA+ L L +++I+R I  LE E+G K+F RHARG TLTE G 
Sbjct: 4   WTELRTAYQVAKLGTVSAAAQTLRLHRATINRHIDLLEAEIGGKIFIRHARGYTLTEIGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            + RV  +    ++     +Q    +  G++++ TT+      L G + +F +  P  Q 
Sbjct: 64  DVLRVAQKTEELIDDLAGRVQGGKTQIEGEIKL-TTLAPFAAFLMGAIAQFRVQNP--QC 120

Query: 125 QLILDNKDIDISMDYADCAIRLR---KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + +D  +    ++Y +  I LR   KP     ++  +   +  + YA   Y+     P 
Sbjct: 121 LVRIDVGEDLAKLEYGEAHIALRAGAKPDHPDYVVT-QFGDVSFNLYAHDSYIARHGLPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ +   H  +     +P     F  W+    R    P +  L         +  + G G
Sbjct: 180 NLDDFSDHTFVL--QQLPHDRLPFGLWIKDHIR----PEMVALSSRDIWVTTKAILAGIG 233

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  + D   + + NL R++      S T +      L  T K++A 
Sbjct: 234 LGFVNDAEAQTHGNLQRVLPPNPDWSATGWLVTHVDLHRTEKVQAM 279


>gi|223937682|ref|ZP_03629584.1| transcriptional regulator, LysR family [bacterium Ellin514]
 gi|223893654|gb|EEF60113.1| transcriptional regulator, LysR family [bacterium Ellin514]
          Length = 327

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 118/257 (45%), Gaps = 22/257 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +LR F ++A++ SFT AA++L+LSQS++S  +  LET+VG +L  R  + + LT+ 
Sbjct: 29  LDTRQLRAFVMLAKTASFTLAAKELNLSQSAVSHSMKALETDVGCRLLDRMGKKVLLTQA 88

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L     ++  ++  T+  L++      G+LRI T+    Q +L   L+EF   +P  
Sbjct: 89  GEQLLHHAEKIMQEMSITRASLEQLGKWGKGRLRIGTSATACQYILPAVLREFKESFPQY 148

Query: 123 QIQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
            I +           L N  ID+++          +P +        L T  +    +P 
Sbjct: 149 AISIEPGDALECEEALRNNRIDVALAL--------EPEKEEQFAFHPLFTDELLFLVSPL 200

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           +     + +S  E+ K + + +     K  + F  +    R  G    + +++ S  +I 
Sbjct: 201 HPWAAAKSISRSEIPKQSYVLYN----KKSQTFRMVEKYFRHEGMVLNTVIELGSMEAIK 256

Query: 233 QYCVLGSGIALLPDYIV 249
           +   LG G+ +L  +I 
Sbjct: 257 ELVKLGLGVGILAPWIA 273


>gi|116050852|ref|YP_790325.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586073|gb|ABJ12088.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 339

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 11/248 (4%)

Query: 10  VFYV-VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           V Y+ V   GSF+ AA +  L+ S+++R++  LE  VG  L  R    +  T  G     
Sbjct: 32  VLYLDVLDGGSFSAAARKHPLTPSAVARRMDALERAVGSTLLVRTTHAVRATPAGLAFAD 91

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  +L   + E    S  P G +RI   +  G+  L   + +FL   P + +QL L
Sbjct: 92  RARRIVTELRLARAEAVSLSTAPQGLIRIDAPVPFGRRHLAPAIADFLKANPGLDVQLRL 151

Query: 129 DNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ID+  ++    D  +R   P+  S L+   L  +     A+P YL+    P S  E
Sbjct: 152 IGSFIDLQGEHLGEVDLVLRA-GPLPDSRLVATSLAPMVRVVCASPEYLREHGVPASPGE 210

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I + +L P     + W    D  +    P+ + L  N+  +++   + G GIA 
Sbjct: 211 LPEHAGIDWDNLSPP----YAWRFQHDGKLQHLRPKRARLATNNAEAMVDAALAGLGIAH 266

Query: 244 LPDYIVKD 251
           LP ++  +
Sbjct: 267 LPTWLCSE 274


>gi|51597692|ref|YP_071883.1| LysR family regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|153950078|ref|YP_001399572.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|186896833|ref|YP_001873945.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590974|emb|CAH22632.1| LysR-family regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|152961573|gb|ABS49034.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|186699859|gb|ACC90488.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
          Length = 303

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGALFLSHARQIIGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P+YL+    P
Sbjct: 121 QITLELNTDDLNIDLLEQRTDIAIRI-GALRDSTIHARLLGASRVRLLASPNYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
            +I+ L  H+L+ F        E  N  +    P G    I  L  +S  ++    + G 
Sbjct: 180 HTIEALADHSLLGFTQ-----PEFLNQWSLPHLPGGRSSIIPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVI----TPSFTVYF 271
           GIA L D++ +++     LV ++ D I     P   VY+
Sbjct: 235 GIAELSDFMTREDQLAGRLVEVLADQILETWQPINAVYY 273


>gi|330448716|ref|ZP_08312364.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492907|dbj|GAA06861.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 312

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 125/273 (45%), Gaps = 9/273 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ +  SG+FT AA +L +S S +S+Q+S LE E+ +KL  R  R  TLT++G + 
Sbjct: 8   RMAIFHTLVNSGNFTSAAHKLGVSTSHVSKQLSLLEAELQVKLVQRTTRSFTLTDEGIEY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   +V   +      + +   + SG LR+  +   G   +   ++ F   +PD+ +++
Sbjct: 68  AKFCEQVVSAVLDADAMMADIRDEVSGTLRLGLSQSFGTMHIIPAIEHFRRQFPDLHVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   ++  +  D  I   + I    + QR L        A+P YL +   P    +L
Sbjct: 128 SLFDHRANMVEEGLDLWITNVENIPEGYVAQR-LADTRFIVAASPEYLMHHSAPTHPSDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + + +   + +    W    D+      +S   +V+   ++   CV G GIA L 
Sbjct: 187 QEHNCLVYQN---RQVNHGTWSFIRDQEGLCVTVSGNYRVDLAEAVRDACVSGWGIAYLA 243

Query: 246 DYIVKD---NPNLVRIMEDV-ITPSFTVYFCYP 274
            Y++ D      L++++ D         Y  YP
Sbjct: 244 TYLLTDEFKTGKLIQLLNDWEANQGMHFYAVYP 276


>gi|258621628|ref|ZP_05716660.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258586100|gb|EEW10817.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 323

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 136/300 (45%), Gaps = 25/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 23  NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQS 82

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  L     +L E S K  G L I+         L   L +F    PDI ++
Sbjct: 83  YFLDIKDIFSSLAEATDKLLERSEK--GALTISLPPSFAIQWLVPRLADFNQQEPDIDVR 140

Query: 126 LILDNKDIDISMDYADCAI---RLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + D     D  D AI   R   P +++  L Q  L+ +      +P  L   +   
Sbjct: 141 IKAVDMDEGSLTDDVDVAIYYGRGNWPGLRADKLYQEFLIPL-----CSPALLLGNKPME 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++++L  H L+   D   K  + F   N L  V+   G P  S   +     ++Q    G
Sbjct: 196 TLRDLSFHTLLH--DTSRKDWKQFAKENGLDNVNVNHG-PIFSHSTM-----VLQAAAHG 247

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+AL  + + +   D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 248 QGVALGNNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 307


>gi|94314343|ref|YP_587552.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93358195|gb|ABF12283.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 304

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 25/305 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF VVAR+ + T AA +L +SQS++SRQI+ LE  +G++LF R   G+ LTE G  
Sbjct: 8   NPLKVFEVVARAKNLTTAANELRVSQSAVSRQIAVLEEYLGVQLFTRERIGVKLTEVGEA 67

Query: 66  LHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             R     + ++ E T+   Q+ S      +R+ T   L    L   L  F L YPD+++
Sbjct: 68  YARRIGPAFEEISEATKFVTQKYS---DNVIRLRTYTTLTARWLIPRLPHFKLQYPDVEV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLK---NCR 178
            +   N  +D   +  D AI L     P   ++L+   ++        +P +L+      
Sbjct: 125 LITNSNAPLDFGTEQCDLAIVLGDGNWPNAEATLLLEDVI----EPVCSPAFLEAFHGST 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           E L ++ L    L     L+ K  ++    WLA V       +   +  +S +   Q   
Sbjct: 181 EQL-LESLQSKRL-----LVSKYRKNDWPTWLAHVGMGHVFDKAEKMVFSSSILTWQAAT 234

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV---YFCYPEALKNTGKLKAFRNFIFLK 293
              GIA+   +++  +    R++     P  T    Y   P   + +GK+ AF+ ++  +
Sbjct: 235 DNLGIAIGQQHMLDPDLKAGRLVCPFARPLRTGRDHYIVTPSVQRYSGKIAAFKEWLVRE 294

Query: 294 ARDWK 298
           AR+ K
Sbjct: 295 ARESK 299


>gi|49477701|ref|YP_036558.1| LysR family transcriptional regulator [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49329257|gb|AAT59903.1| transcriptional regulator, LysR family [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 300

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISIPLYESELIIVVPTGHQLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
              +SI EL  + LI         +LI    + FN+     +PI       L++++  S+
Sbjct: 181 HNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|78060005|ref|YP_366580.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964555|gb|ABB05936.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 303

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 19/300 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +   V  +GS + AA QL +  +++SR+I+ LE+ +  +L +R  R L+LTE G  
Sbjct: 5   ESMSLLVAVIDAGSMSAAARQLGIPLATVSRKIADLESYLNTRLLHRTTRQLSLTEAGES 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +  T+         P G+L +   I  G+  +   L  FL  YP+I ++
Sbjct: 65  YVAGCRRILDDIAETERAATGEYAAPRGELIVTAPIVFGRLHIVPVLAAFLAHYPEIDVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++   +  +  D A+R+ + +  SS +  ++ ++     A+P YL     P    +
Sbjct: 125 LVLTDRVTHLMEEQIDVALRIGE-LPDSSFMATRVGSVRRVICASPAYLAAHGTPTEPTD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIA 242
           L +H  ITF  L  +      W+   ++  GE   P  S   VN+  + +   VLG G+ 
Sbjct: 184 LARHQCITFEVLASR----RAWVFGGEK--GELTVPVHSRFAVNTAEAAIDAAVLGVGLI 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG------KLKAFRNFIFLKARD 296
            +  Y V     L     DV+  +F      P +L + G      KL+AF +F+  + R+
Sbjct: 238 RVLSYQVAQ--ALRDRTLDVVLDAFESQ-PLPVSLVHKGQAPMPLKLRAFLDFVAPRLRE 294


>gi|33592454|ref|NP_880098.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33572100|emb|CAE41638.1| LysR-family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|332381870|gb|AEE66717.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 301

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 129/301 (42%), Gaps = 18/301 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F        F  A   L + +S +SR+I+ LE  +G++L  R  R  ++T+ G
Sbjct: 3   DLNDLYYFVQTVDHRGFAPAGRALGMPKSKLSRRIAVLEERLGVRLIQRSTRHFSVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  Q  +  + V+P G +R++  + L    +   L EF+L YP + 
Sbjct: 63  QTYYEHCKAMLVEAEAAQEAIDAAQVEPRGVVRLSCPVALLHTHVGAMLGEFMLRYPRVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P+++S L+ R          A+P  L     P  
Sbjct: 123 LHLDASNRRVDVLGEGVDVAIRVRPPPLENSDLVMRPFADRGQCLVASPALLARHGAPAL 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLG 238
             +L     +  G  +P   +  +WL T   P G     P    +     L++    V G
Sbjct: 183 PADLAAWPRLALG--LPN--QPHSWLLT--GPQGAQATVPLAPRMVTTDMLALRSAAVAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294
            G+  LP  +V+    +  LVR++ +       ++  +P      G L + R  + FL  
Sbjct: 237 VGVVQLPSMMVRGQLADGTLVRLLPEWAPCRELIHAVFP---SRRGLLSSVRTLVDFLAE 293

Query: 295 R 295
           R
Sbjct: 294 R 294


>gi|330818221|ref|YP_004361926.1| transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327370614|gb|AEA61970.1| transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 308

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 89/189 (47%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F V+ R  SF  AA +L ++ S++S  + GLE ++G+KL  R  R ++ T+ G
Sbjct: 8   DLATLNAFSVICRRKSFRLAAAELGVTASALSHALRGLEEKLGVKLLNRTTRAISPTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L R     +  +E    EL +    PSG +R+    D  Q L+   L  +L  +P  Q
Sbjct: 68  AALVRGLDLGFEHIEGALAELSQFRNTPSGLIRLNVPRDASQLLISPILGRYLNRFPKSQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++++D+  +DI     D  IR  + +    +       +     A+P YL+    P   
Sbjct: 128 IEVVVDDGMVDIVKGGFDAGIRYGRSVPQDMVGIPLTPDLEWVLAASPDYLRLHGAPREP 187

Query: 184 QELDKHNLI 192
            EL  H+ I
Sbjct: 188 TELLAHSCI 196


>gi|313497060|gb|ADR58426.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 305

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 123/305 (40%), Gaps = 42/305 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  R F + A++ SF  AAE LH++  ++SRQI  LE  +G++LF R  R + LT  G  
Sbjct: 7   NAFRYFDIAAQTESFVRAAEHLHVTHGAVSRQIRLLEESLGVELFERRNRAIFLTPAGRA 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   T  ++ +LE     LQ+ +      L    TI +    L   L  F   +PD+Q+ 
Sbjct: 67  LQSTTQAIFEQLEGAVQRLQQQARDNVLVLSCEPTIAM--RWLIPRLPRFHATHPDLQLH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+     +D +    D AIR       + L  +K+            ++     P +   
Sbjct: 125 LVAAGGPLDFARSGVDLAIRRDDFHWDNQLYSQKICD---------EWIGPVCHPAASAR 175

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISCLQVNS---------YLSIMQ 233
           LD   L                L +  RP   P   R+S  Q            YLSI Q
Sbjct: 176 LDGQRL----------------LHSATRPAAWPTWLRLSGQQARHCERSDYEHFYLSI-Q 218

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
               G G+A+    +V+D  +  ++      +      +   P+ L ++GK + F  +I 
Sbjct: 219 AASAGLGLAIASALMVRDELDSGQLQAPFGFVCDGSAYHLLSPQPLADSGKRQRFAGWIM 278

Query: 292 LKARD 296
            + R+
Sbjct: 279 DECRE 283


>gi|288936632|ref|YP_003440691.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288891341|gb|ADC59659.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 297

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 23/243 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VAR GS T AA +L ++ S++S+ I  LE  VG+ LF RH RG+ +TE+G +L
Sbjct: 9   SLRSFEAVARLGSVTQAAHELSVTHSAVSQHIKQLEALVGVTLFIRHGRGVRITEEG-RL 67

Query: 67  H--RVTSEVYHKLETTQIELQESSVKPSG-KLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++   + H  + T++      +KP   ++ +AT    G + L   L  F   +P I 
Sbjct: 68  YALQIREALQHIADATRM----VQIKPRTLEVTLATLPSFGCHWLLPRLARFQARHPQIA 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+     +++  +  D AIR+ +      +  R L        AAPHY ++   P + 
Sbjct: 124 VRLLTSLAVVNLQQEGIDLAIRMGQG-DWEGMESRHLFADEQLVVAAPHY-RSGDLPTTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFN-WL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           Q +   ++I         ME ++ W   A +++PI     + L++N    +++   LG+G
Sbjct: 182 QAIAASDIIF-------SMESWHAWCSQAGLEKPIVP---AGLRLNDSNLVLEAVRLGAG 231

Query: 241 IAL 243
           +AL
Sbjct: 232 VAL 234


>gi|218662932|ref|ZP_03518862.1| LysR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 290

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 1/185 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GS+T AA  L +S S+IS+ +  LE  +G+ L  R  R LTLT +G  LH  
Sbjct: 15  AFARVASLGSYTAAARSLSISSSAISKSVQRLEERLGVTLISRTTRSLTLTPEGLLLHER 74

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  + E  +     +  +PSG ++I   + +G +L+  +L  F   YP + + L L 
Sbjct: 75  ALRLLREAEEFEQIAAATRAEPSGLIKITAPLPVGVHLISPHLPAFRERYPKVSVDLRLS 134

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   D+  +  D AIR+  P+  S LI R L    + A+A+P YL+    P   ++LD H
Sbjct: 135 DTFADLIEEGIDLAIRVGHPVD-SRLIARVLAPNRVCAFASPAYLERRGIPTRPEDLDGH 193

Query: 190 NLITF 194
           + + F
Sbjct: 194 DCVNF 198


>gi|126208177|ref|YP_001053402.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae L20]
 gi|190150008|ref|YP_001968533.1| HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303252384|ref|ZP_07338550.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247671|ref|ZP_07529712.1| hypothetical protein appser2_6650 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307263339|ref|ZP_07544957.1| hypothetical protein appser13_7580 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|126096969|gb|ABN73797.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915139|gb|ACE61391.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648843|gb|EFL79033.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855839|gb|EFM88001.1| hypothetical protein appser2_6650 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306871401|gb|EFN03127.1| hypothetical protein appser13_7580 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 298

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 132/288 (45%), Gaps = 10/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE G  
Sbjct: 5   NAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTEAGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+IQ+ 
Sbjct: 65  YYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPNIQLN 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P ++ +
Sbjct: 125 IEFSDRRVDVVAEGYDLVLRI-GALEDSSIVAKRIARSELVLLASPEYLAKHGTPENLAQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + + +       D +    +     +P    +  N Y +++Q      GI  LP
Sbjct: 184 LTEHTCLIYENHQQWQFTDGDQKVKI-----KPNAHVISNNGY-ALLQMTKAEQGIVNLP 237

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ K+      LV I+      S  +   YP     + K+K    F+
Sbjct: 238 LFLAKEEISAGKLVEILPQYKQHSIDISILYPHRRYLSPKVKVLIEFL 285


>gi|91788790|ref|YP_549742.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91698015|gb|ABE44844.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 309

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 1/174 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   A   SF+ AA +L L+ +++SR ++ LE  +G++LF R  R LTLTE G + 
Sbjct: 6   NLESFVRSAEGRSFSVAARRLELTPAAVSRNVAMLERNLGVRLFQRSTRKLTLTEAGERF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     L++    +   S  P G L+++ +   G   +   L  FL  YP I+   
Sbjct: 66  LASIGGNLIALQSAIAAVSSDSGDPVGSLKVSMSPTFGIEYIVPLLPAFLDRYPLIRPDW 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
             +N+ +D+  +  D AI     + S  ++ R L  IH+ A A+P Y+   + P
Sbjct: 126 HFENRPVDLIAEGYDAAIGGGFEL-SPGVVSRALAPIHLVAVASPAYMAGQQAP 178


>gi|152978246|ref|YP_001343875.1| DNA-binding transcriptional regulator IlvY [Actinobacillus
           succinogenes 130Z]
 gi|150839969|gb|ABR73940.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 282

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 135/290 (46%), Gaps = 23/290 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +++ L +F  ++ + +F+  A Q H+S S++SRQI  +E E+G  LF R  R + LTE 
Sbjct: 1   MNFNDLSLFLQLSETKNFSKTARQSHMSPSTLSRQIQRMEQELGGVLFLRDNRQVQLTEL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +         +  Q +++ +S + SG+L++  ++    + L   LK F L YP +
Sbjct: 61  GEQFAQFAKRSRADWQNFQSQVRSNSAELSGELKLFCSVTAAYSHLPQVLKNFRLRYPKV 120

Query: 123 QIQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
           +IQL          ++  + +D+++  A   + L   +    + +  L  I     A P 
Sbjct: 121 EIQLTTGDAASAIQLVQTQQVDLAL--AGKPLNLPNAVVFHPIDEVSLALIAPRV-ACPA 177

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
                +EP++ QE+    L   G +  +  + F       + I  P+I    V+ +  I+
Sbjct: 178 TQLLQQEPVNWQEM-PFILPVEGPVRQRIDQWFR-----QKKIKHPKIYAT-VSGHEGIV 230

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALKN 279
               LG G+ALLPD ++K++P   +I     D       + FC  + + N
Sbjct: 231 PMVALGCGLALLPDVVIKNSPMNTQISSLTFDTAIAPLELGFCAQKKVWN 280


>gi|167818854|ref|ZP_02450534.1| LysR family regulatory protein [Burkholderia pseudomallei 91]
 gi|167827228|ref|ZP_02458699.1| LysR family regulatory protein [Burkholderia pseudomallei 9]
 gi|167913978|ref|ZP_02501069.1| LysR family regulatory protein [Burkholderia pseudomallei 112]
          Length = 290

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 4   LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G   + T        L   L +     P + ++ +
Sbjct: 64  AAVRQSLDALRAATADIR--SRRANGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVR-V 120

Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
           + ++DID   ++AD AI           S+ L Q  +  +   A+   H          R
Sbjct: 121 VTSQDIDPQREHADVAILFGAGDWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLLR 180

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 181 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 229

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 230 NQGVALGWAPLV-DTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 286


>gi|312960287|ref|ZP_07774798.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311285509|gb|EFQ64079.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 340

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 16/266 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +    V+   G++T AA +L +S+S++S++IS LE   G +L  R  R + LT+ G 
Sbjct: 38  WTHIHWLSVLEEQGTYTAAAARLGVSKSAVSQRISDLEKATGTRLVTRTTRSVRLTDAGL 97

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L R     Y ++      +++S  +  G +R+   +   +  L  +L EFL  YP ++I
Sbjct: 98  SLTREVRSAYAQIARGFSSVRDSVGEIRGLVRLTAPVAFARQQLVPHLSEFLQQYPQVRI 157

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + +    ++ +  D A+R    +  +  +  KL        A   YL+   EP    
Sbjct: 158 QLDVSDALSSLAAEGYDLAVRHGFQVPETH-VAWKLCDTGSVLVATQDYLQRHGEPREPG 216

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP------IGEPRISCLQVNSYLSIMQYCVLG 238
           +L  HN + +    P+  +   W  T +R       +  P       N+  ++    +  
Sbjct: 217 DLSAHNCLFY----PRGTDQPAW--TFERGGKNLERLTVPIAGSFATNNSEALRDSALNH 270

Query: 239 SGIALLPDYIVK---DNPNLVRIMED 261
            GIALLPD+       +  LV++++D
Sbjct: 271 LGIALLPDFSAHAALASGTLVQVLKD 296


>gi|262165145|ref|ZP_06032882.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           mimicus VM223]
 gi|262024861|gb|EEY43529.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           mimicus VM223]
          Length = 323

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 136/300 (45%), Gaps = 25/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 23  NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQS 82

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  L     +L E S K  G L I+         L   L +F    PDI ++
Sbjct: 83  YFLDIKDIFSSLAEATDKLLERSEK--GALTISLPPSFAIQWLVPRLADFNQQEPDIDVR 140

Query: 126 LILDNKDIDISMDYADCAI---RLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + D     D  D AI   R   P +++  L Q  L+ +      +P  L   +   
Sbjct: 141 IKAVDMDEGSLTDDVDVAIYYGRGNWPGLRADKLYQEFLIPL-----CSPALLLGNKPME 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++++L  H L+   D   K  + F   N L  V+   G P  S   +     ++Q    G
Sbjct: 196 TLRDLSFHTLLH--DTSRKDWKQFAKENGLDNVNVNHG-PIFSHSTM-----VLQAAAHG 247

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+AL  + + +   D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 248 QGVALGNNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 307


>gi|15895660|ref|NP_349009.1| LysR family transcriptional regulator [Clostridium acetobutylicum
           ATCC 824]
 gi|15025407|gb|AAK80349.1|AE007739_5 Transcriptional regulator, LysR family [Clostridium acetobutylicum
           ATCC 824]
 gi|325509810|gb|ADZ21446.1| Transcriptional regulator, LysR family [Clostridium acetobutylicum
           EA 2018]
          Length = 286

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 123/274 (44%), Gaps = 33/274 (12%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  +L+ FY +A  G  T AA++LH++Q  +S Q+  LETE+G+KL  R +R + LT+ G
Sbjct: 2   DIKQLKYFYTIAEEGKITTAAKKLHIAQPPLSYQLKNLETELGVKLVERGSRNIKLTDAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+    ++ +  +TT  EL +      G L I T    G +L+   L +F   YP I 
Sbjct: 62  LMLYNRAKQILNLTQTTIDELNDFKNGTHGTLSIGTVSSSGWSLVNNILIKFHKKYPLIN 121

Query: 124 IQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
            ++          IL    I+ ++        +R P  S  L    L    M A     +
Sbjct: 122 FEIHEGNTYELLEILKRGIIEFAI--------VRTPFNSYGLNCIYLPKEPMVAVMREDF 173

Query: 174 LKNCREPLSIQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
             +      I EL    LI    F  LI +  E+ N+          P++ C   ++  +
Sbjct: 174 NYSLSNTTKISELKDKPLIFYRRFEKLIYEACENSNF---------RPKVFCKNDDARTT 224

Query: 231 IMQYCVLGSGIALLPDYIVK-DNPNLV-RIMEDV 262
           ++ +   G GIA++P  +V   N NL+ + +ED 
Sbjct: 225 LL-WASAGFGIAIVPKSVVSLGNSNLIYKKIEDA 257


>gi|167722694|ref|ZP_02405930.1| LysR family regulatory protein [Burkholderia pseudomallei DM98]
 gi|167741662|ref|ZP_02414436.1| LysR family regulatory protein [Burkholderia pseudomallei 14]
 gi|167897313|ref|ZP_02484715.1| LysR family regulatory protein [Burkholderia pseudomallei 7894]
 gi|167921892|ref|ZP_02508983.1| LysR family regulatory protein [Burkholderia pseudomallei BCC215]
          Length = 290

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 4   LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G   + T        L   L +     P + ++++
Sbjct: 64  AAVRQSLDALRAATADIR--SRRANGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 121

Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
             ++DID   ++AD AI           S+ L Q  +  +   A+   H          R
Sbjct: 122 T-SQDIDPQREHADVAILFGAGDWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLLR 180

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 181 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 229

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 230 NQGVALGWAPLV-DTPIAAGQLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 286


>gi|209516406|ref|ZP_03265262.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503168|gb|EEA03168.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 285

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 6/127 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD D LR F  V  +GSFT AA  +H SQ+++S QI  LET +G  LF R+ R L+LT  
Sbjct: 5   FDVDLLRSFVAVVEAGSFTKAAASVHRSQAAVSMQIKRLETMLGTTLFARNTRNLSLTRP 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKP--SGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           G+ L     E   +    Q E   + V+P  +G++ +    D   +LL   L+ F  LYP
Sbjct: 65  GNTLL----EYARRALALQEEAWSAIVRPEVTGRVVLGAPDDYVSSLLSPVLRRFATLYP 120

Query: 121 DIQIQLI 127
            ++I+++
Sbjct: 121 RVEIEIV 127


>gi|254241515|ref|ZP_04934837.1| hypothetical protein PA2G_02213 [Pseudomonas aeruginosa 2192]
 gi|126194893|gb|EAZ58956.1| hypothetical protein PA2G_02213 [Pseudomonas aeruginosa 2192]
          Length = 339

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 11/248 (4%)

Query: 10  VFYV-VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           V Y+ V   GSF+ AA +  L+ S+++R++  LE  VG  L  R    +  T  G     
Sbjct: 32  VLYLDVLDGGSFSAAARKHPLTPSAVARRMDALERAVGSTLLVRTTHAVRATPAGLAFAD 91

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  +L   + E    S  P G +RI   +  G+  L   + +FL   P + +QL L
Sbjct: 92  RARRIVTELRLARAEAVSLSTAPQGLIRIDAPVPFGRRHLAPAVADFLKANPGLDVQLRL 151

Query: 129 DNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ID+  ++    D  +R   P+  S L+   L  +     A+P YL+    P S  E
Sbjct: 152 IGSFIDLQGEHLGEVDLVLRA-GPLPDSRLVATSLAPMVRVVCASPEYLREHGVPASPGE 210

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I + +L P     + W    D  +    P+ + L  N+  +++   + G GIA 
Sbjct: 211 LPEHAGIDWDNLSPP----YAWRFQHDGKLQHLRPKRARLATNNAEAMVDAALAGLGIAH 266

Query: 244 LPDYIVKD 251
           LP ++  +
Sbjct: 267 LPTWLCSE 274


>gi|15890991|ref|NP_356663.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15159311|gb|AAK89448.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 122/292 (41%), Gaps = 14/292 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L++F + A   +F   A +L ++ + ++R I+ LE ++G++LF R  R ++LT  G
Sbjct: 3   DHKALKIFLMAAEKRNFAQVARELSMTAAGVTRAIAALECDLGVQLFVRTTRQVSLTTDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +            LE  + +++ +     G+LRI+    LG+ +L   L  F  LYP + 
Sbjct: 63  AVFAAQIQPAVEALENARRDVRNAHKADEGRLRISAPTWLGKTVLPPILSGFRELYPKMC 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            ++ L +  ++I  D  D AIR+         I RK+  +     AAP            
Sbjct: 123 FEISLSDGLVNIVDDDYDLAIRISSAPSDKFTIWRKIRAVPRILVAAPGS--------RF 174

Query: 184 QELDKHNLITFGDLIPKCMEDF--NW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++   + +T  D +    E    NW L+     I          N+   +      G+G
Sbjct: 175 TQMKHPSDLTPDDCLAYSGESRRENWILSDGGSSITITAGRAFSANNGEVLADMAADGAG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +A+LP + + +   +  LV ++     P   +   YP       ++  F  F
Sbjct: 235 VAMLPGFHIAEHIRSGRLVHVLPGWAPPELWLTLYYPPYQTLPPRIATFSKF 286


>gi|126456587|ref|YP_001074788.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|126230355|gb|ABN93768.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
          Length = 292

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 4   LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G   + T        L   L +     P + ++++
Sbjct: 64  AAVRQSLDALRAATADIR--SRRANGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 121

Query: 128 LDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
             ++DID   ++AD AI           S+ L Q  +  +   A+   H          R
Sbjct: 122 T-SQDIDPQREHADVAILFGAGDWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLLR 180

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 181 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 229

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 230 NQGVALGWAPLV-DTPIAAGQLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 286


>gi|325277102|ref|ZP_08142753.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097761|gb|EGB95956.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 305

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 122/300 (40%), Gaps = 42/300 (14%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  R F + A+S SF  AAE LH++  ++SRQ+  LE  +G++LF R  R + LT  G  
Sbjct: 7   NAFRYFDIAAQSESFVRAAEHLHVTHGAVSRQVRLLEESLGVELFERRNRAIFLTAAGRA 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           LH  T  ++ +LE     LQ  +      L    TI +    L   L  F + +PD+Q+ 
Sbjct: 67  LHGTTQAIFEQLEGAVQRLQHQARDNVLVLSCEPTIAM--RWLIPRLPRFHVAHPDLQLH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+     +D +    D AIR       + L  +K+       +  P     CR P +   
Sbjct: 125 LVAAGGPLDFARGGVDLAIRRDDFHWGNQLFNQKVCD----EWVGP----VCR-PSAGFR 175

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISCLQVNS---------YLSIMQ 233
           LD   L                L +  RP   P   R+S  +            YLSI Q
Sbjct: 176 LDGQRL----------------LHSTTRPAAWPTWLRLSGQRARHCERSDYEHFYLSI-Q 218

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
               G G+A+    +V+D  +  ++      I      +   P+ L + GK + F  ++ 
Sbjct: 219 AASAGLGVAMASALMVRDELDSGQLQAPFGFIRDGSAYHLLSPQPLNDGGKRQRFTGWVM 278


>gi|296115529|ref|ZP_06834159.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977924|gb|EFG84672.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 306

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 8/193 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L +F  +A++G F   A +L LS S++S  I GLE  +G++LF R  R +TLT  G
Sbjct: 7   DLGDLNLFCAIAKTGGFRKTAAELDLSPSALSHAIRGLEKRLGVRLFNRTNRSVTLTPAG 66

Query: 64  SK-LHRVT---SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
            + L  VT   SE+ + LE     L     +P+G+LR+    D  + +L   +  +  LY
Sbjct: 67  RELLSHVTSGLSEITNGLEA----LNRFRDRPAGQLRLNVPTDAARLVLAPVIARYAALY 122

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+++++ +++  +DI     D  +R    I    +       +     A+P YL +   
Sbjct: 123 PDVRLEVAVEDAVVDIIEHGFDAGVRYGGTIPEDMIAVPLCPDLRWVTVASPAYLASAPP 182

Query: 180 PLSIQELDKHNLI 192
                +L +H  I
Sbjct: 183 LRCPTDLHQHRCI 195


>gi|291619675|ref|YP_003522417.1| YhcS [Pantoea ananatis LMG 20103]
 gi|291154705|gb|ADD79289.1| YhcS [Pantoea ananatis LMG 20103]
 gi|327396614|dbj|BAK14035.1| putative HTH-type transcriptional regulator HI1364 YhcS [Pantoea
           ananatis AJ13355]
          Length = 300

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 22/252 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F     SGSFT AA +LH++ S+IS+ +S LE  +G +L  R  R L LT+ GS  ++  
Sbjct: 12  FVASVESGSFTAAAARLHVTGSAISKSVSRLEMRLGSRLLERTTRKLQLTDAGSAYYQTC 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +L   +  L    + PSG+LR+A     G+  +   L  F   +P++++++   +
Sbjct: 72  LRIMEELAEAEAVLAAQRIIPSGRLRLAVPHTYGRLNVMPLLIPFCQQHPELELRMSFSD 131

Query: 131 KDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + ID+  +  D A+R+       +S+  R +    M   A+P +L+    P + Q L +H
Sbjct: 132 RFIDLFDEGIDVAVRIGGSDDLPASMGCRHIGRERMVFCASPAWLEREGRPQNEQALMQH 191

Query: 190 NLITF--GDLIPKCMEDFNWLAT--------VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             I +   D  PK      WL +         D P    R++   V++ L   Q  + G 
Sbjct: 192 RAILYERADNTPK-----PWLFSGKDGHSYWRDVPF---RMALADVDAQL---QAVIAGL 240

Query: 240 GIALLPDYIVKD 251
           G+A +P ++V++
Sbjct: 241 GVAQMPSWLVQN 252


>gi|119468390|ref|ZP_01611481.1| putative Transcriptional regulator, LysR family protein
           [Alteromonadales bacterium TW-7]
 gi|119447898|gb|EAW29163.1| putative Transcriptional regulator, LysR family protein
           [Alteromonadales bacterium TW-7]
          Length = 307

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 133/299 (44%), Gaps = 18/299 (6%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  +   GS T AA+QL L+++  S  +  LET++ + L  R  R +
Sbjct: 1   MKVSFEQLKSMVVFAQIVEQGSLTAAAKQLGLTRAVASYHLKKLETQLEVTLLNRSTRTM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLTE G   +     +  +      +++    +P G L+++  +++G  L+   +  F  
Sbjct: 61  TLTEAGIAYYERCRVITEQANAANQQIENIKSEPQGLLKVSCPVNVGMQLIVPAINTFKR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I+I L L +  +DI  +  D AIR    +  S+L   KL T+      +  Y    
Sbjct: 121 QYPKIEIDLQLTDDVVDIIKNGFDIAIR-GVALSDSNLQATKLTTMSTCICGSSDYFNYY 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQY 234
            +P +  EL  H  + +  L  K +       T+ +   +  I+    L  N+  +   +
Sbjct: 180 GKPKTPAELKAHKWVVY-QLGSKTL-------TLQKGGKKHDITMQGGLSTNNAAARTAF 231

Query: 235 CVLGSGIALLPDYIV--KDNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              G G+  +P Y    K    L+  I++D  T    +Y  +P     + KL+ F +++
Sbjct: 232 VEAGHGLGRIPLYDAWPKVQAGLLEIILDDYKTKDIELYGVFPPGATGSKKLRLFIDYL 290


>gi|152989123|ref|YP_001347677.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964281|gb|ABR86306.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 318

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 11/248 (4%)

Query: 10  VFYV-VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           V Y+ V  SGSF+ AA +  L+ S+++R++  LE  +G  L  R    +  T  G     
Sbjct: 11  VLYLDVLDSGSFSAAARKHPLTPSAVARRMDALERALGSTLLVRTTHAVRATPAGLAFAD 70

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  +L   + E    S  P G +RI   +  G+  L   + +FL   P + +QL L
Sbjct: 71  RARRIVTELRLARAEAVSLSTAPQGLIRIDAPVPFGRRHLAPAIADFLKANPGLDVQLRL 130

Query: 129 DNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ID+  ++    D  +R   P+  S L+   L  +     A+P YL+    P S  E
Sbjct: 131 IGSFIDLQGEHLGEVDLVLRA-GPLPDSRLVATSLAPMVRVVCASPEYLREHGVPASPGE 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I + +L P     + W    D  +    P+ + L  N+  +++   + G GIA 
Sbjct: 190 LPEHAGIDWDNLSPP----YAWRFQHDGKLQHLRPKRARLATNNAEAMVDAALAGLGIAH 245

Query: 244 LPDYIVKD 251
           LP ++  +
Sbjct: 246 LPTWLCSE 253


>gi|15598044|ref|NP_251538.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|254235836|ref|ZP_04929159.1| hypothetical protein PACG_01778 [Pseudomonas aeruginosa C3719]
 gi|9948935|gb|AAG06236.1|AE004711_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126167767|gb|EAZ53278.1| hypothetical protein PACG_01778 [Pseudomonas aeruginosa C3719]
          Length = 339

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 11/248 (4%)

Query: 10  VFYV-VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           V Y+ V   GSF+ AA +  L+ S+++R++  LE  VG  L  R    +  T  G     
Sbjct: 32  VLYLDVLDGGSFSAAARKHPLTPSAVARRMDALERAVGSTLLVRTTHAVRATPAGLAFAD 91

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  +L   + E    S  P G +RI   +  G+  L   + +FL   P + +QL L
Sbjct: 92  RARRIVTELRLARAEAVSLSTAPQGLIRIDAPVPFGRRHLAPAVADFLKANPGLDVQLRL 151

Query: 129 DNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ID+  ++    D  +R   P+  S L+   L  +     A+P YL+    P S  E
Sbjct: 152 IGSFIDLQGEHLGEVDLVLRA-GPLPDSRLVATSLAPMVRVVCASPEYLREHGVPASPGE 210

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I + +L P     + W    D  +    P+ + L  N+  +++   + G GIA 
Sbjct: 211 LPEHAGIDWDNLSPP----YAWRFQHDGKLQHLRPKRARLATNNAEAMVDAALAGLGIAH 266

Query: 244 LPDYIVKD 251
           LP ++  +
Sbjct: 267 LPTWLCSE 274


>gi|107025931|ref|YP_623442.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692886|ref|YP_838419.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737847|ref|YP_001779107.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895305|gb|ABF78469.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650886|gb|ABK11526.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169820035|gb|ACA94617.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 290

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FD D+LR F  VA +GS T AA +LHLSQS++S Q+  LE+  G+ LF R  RG+  T 
Sbjct: 3   GFDLDQLRTFAAVADAGSLTAAAPRLHLSQSTVSEQVRKLESRAGVPLFVRSKRGVEPTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L +    +    E    EL+  ++K  G+LR+A T     N + G L      YP 
Sbjct: 63  AGARLLQHARRIVALNEAAFDELRGQAIK--GELRVAITDYYRTNEVAGMLARLRECYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRL 146
           + +  +   K  +I   +A   I L
Sbjct: 121 LSLH-VSAMKSAEIEAAHARGQIDL 144


>gi|218890953|ref|YP_002439819.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218771178|emb|CAW26943.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 339

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 11/248 (4%)

Query: 10  VFYV-VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           V Y+ V   GSF+ AA +  L+ S+++R++  LE  VG  L  R    +  T  G     
Sbjct: 32  VLYLDVLDGGSFSAAARKHPLTPSAVARRMDALERAVGSTLLVRTTHAVRATPAGLAFAD 91

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  +L   + E    S  P G +RI   +  G+  L   + +FL   P + +QL L
Sbjct: 92  RARRIVTELRLARAEAVSLSTAPQGLIRIDAPVPFGRRHLAPAVADFLKANPGLDVQLRL 151

Query: 129 DNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ID+  ++    D  +R   P+  S L+   L  +     A+P YL+    P S  E
Sbjct: 152 IGSFIDLQGEHLGEVDLVLRA-GPLPDSRLVATSLAPMVRVVCASPEYLREHGVPASPGE 210

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I + +L P     + W    D  +    P+ + L  N+  +++   + G GIA 
Sbjct: 211 LPEHAGIDWDNLSPP----YAWRFQHDGKLQHLRPKRARLATNNAEAMVDAALAGLGIAH 266

Query: 244 LPDYIVKD 251
           LP ++  +
Sbjct: 267 LPTWLCSE 274


>gi|94313772|ref|YP_586981.1| putative LysR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357624|gb|ABF11712.1| putative transcriptional regulator, LysR family [Cupriavidus
           metallidurans CH34]
          Length = 316

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 118/249 (47%), Gaps = 6/249 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D + +R+F  +  S + T AAE+  +++S++SR++  LE  +G +L  R  R + LTE
Sbjct: 5   SLDLNLVRLFVTMVESRTLTAAAERSGMTRSNVSRRLKVLEQHLGAQLMRRTTRHVELTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +  +L++ +  +        G +RI     LG   L   L EF  +YP 
Sbjct: 65  AGQLLYAHALRMLDELQSAKTAIDSLGTVVRGDVRIRLPTGLGHLYLTPLLLEFARIYPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++++++   D+     D A+++         + R++  +     A P +L +    L
Sbjct: 125 ISLRVVINDNIGDLISAEVDMALKITSQPPDDH-VARRICDVGWCLCATPSFLDSRGPIL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSG 240
           S+ +L+  ++I    L  +      W+A     +   PRI   Q   Y  +++  + G G
Sbjct: 184 SVADLESCDMIAPASLGRRFTLKV-WMAGTPTTLRVSPRI---QSGDYPFLLESMIGGLG 239

Query: 241 IALLPDYIV 249
           +ALLP Y V
Sbjct: 240 VALLPRYAV 248


>gi|307942928|ref|ZP_07658273.1| glycine cleavage system transcriptional activator [Roseibium sp.
           TrichSKD4]
 gi|307773724|gb|EFO32940.1| glycine cleavage system transcriptional activator [Roseibium sp.
           TrichSKD4]
          Length = 280

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 31/250 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            R F   AR  SFT AA ++ ++QS++S+QI  LET + + LF RHARGL+LT+ G  L 
Sbjct: 11  FRTFEAAARHLSFTAAANEIGMTQSAVSQQIKALETRLRVALFTRHARGLSLTDNGRSL- 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSG-KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +V   LE      +     P+  +L IAT++ + Q ++  +L  F+  +PD++++ 
Sbjct: 70  --LPQVGAALEKLAFATEAFDAGPTADQLTIATSVSVAQWVITPHLASFMSNHPDVRLRF 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQ---SSSLIQ-RKLVTIHMHAYAAPHYLKNCRE-PL 181
           +      D     AD  IR     Q   ++ L++  +LV     A  +P       E PL
Sbjct: 128 LSAIWPDDFHTARADVEIRFGSQKQVGKNAELLEPSRLV-----ALKSPRLEGKLEELPL 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                       +G++ P C                P I     +SY   +Q  + G+G+
Sbjct: 183 IETVGTSSGWRAWGEVFPGC--------------SAPSIFA---DSYGMALQIAMHGNGV 225

Query: 242 ALLPDYIVKD 251
           AL+ + +  +
Sbjct: 226 ALVNELLAGN 235


>gi|256396968|ref|YP_003118532.1| LysR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256363194|gb|ACU76691.1| transcriptional regulator, LysR family [Catenulispora acidiphila
           DSM 44928]
          Length = 296

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 65/327 (19%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L VF  VAR  SFT AA  L  +QS+ISRQI+ LE+ VG+ LF R  RG+ LTE+
Sbjct: 1   MDTALLEVFLEVARRESFTAAAGSLGYTQSAISRQIAALESSVGVPLFDRLPRGVRLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +    + V  +L     +++       G LR+         L+   +  F   +P +
Sbjct: 61  GRAMVPHATAVLGRLRAAVADVRAVGTLGGGGLRVGAIPTADMALIPRAVAAFRRAHPAV 120

Query: 123 QIQ--------LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHY 173
            +         L++D ++ D+     D A+               + T H   A+     
Sbjct: 121 AVSHVEGLTRGLVVDVREGDL-----DLAV---------------IGTAHPEPAFEGVRL 160

Query: 174 LKNCREPLSI-----QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-----ISCL 223
            K   +PLS+       L   +L++  DL     E  NW+A      G+PR     I+ +
Sbjct: 161 RKLMDDPLSVALPLDHRLADRDLLSLADL-----EGENWIA------GQPRSQDTLIAGV 209

Query: 224 QVNSYLSIMQYCVL-----------GSGIALLP---DYIVKDNPNLVRIMEDVITPSFTV 269
               +   + Y VL           G G+ L+P      V+ +  +V + +  + P  +V
Sbjct: 210 LDGEFQPRIPYVVLEWSAKQGFVAAGLGVTLVPALAAAAVRPDVVVVALDQSEVAPR-SV 268

Query: 270 YFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   PE + ++  + AF   +   A D
Sbjct: 269 FAATPEGVADSAAVTAFLELLAPAALD 295


>gi|221200331|ref|ZP_03573373.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206010|ref|ZP_03579024.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221174022|gb|EEE06455.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221179672|gb|EEE12077.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 310

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 24/293 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR GS   AA+ L LS  ++S+ +  LE  + ++LF R+ R L LT  G  L 
Sbjct: 10  LHTFVEVARCGSMKQAADLLCLSPGAVSQHVRHLEDRLAVRLFERNGRELELTGTGRALF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +  + ++E+    L  ++ +   +L + TT       L   L  F   YP+I+I + 
Sbjct: 70  DALAGGFREIESAWANLYGANRRVV-RLTVTTTASFANTWLVQRLGAFNAHYPEIEITID 128

Query: 128 LDNKDIDISMDYADCAIR---LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              + +D+  DY D AIR    R P  +S     ++ T  +    +P  L   R      
Sbjct: 129 TRPQLVDLRRDYVDIAIRHGLGRYPGHASF----RIWTPELWPVCSPQLLDRARPIAQPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSG 240
           +   + L+   D     +    WL    + I +PR    Q  +  S    +++  V   G
Sbjct: 185 DCLAYPLLQDADRADWVL----WLRA--QGIEDPRA---QRGASFSDDALLIKAAVASQG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IAL+ D   +D      LVR++        + Y    EA ++  K+ AFR+++
Sbjct: 236 IALVRDIYARDEIAAGRLVRVLARPWPTELSYYVVCNEARRDEWKIVAFRDWL 288


>gi|207722251|ref|YP_002252687.1| hypothetical protein RSMK04834 [Ralstonia solanacearum MolK2]
 gi|206587428|emb|CAQ18010.1| hypothetical protein RSMK04834 [Ralstonia solanacearum MolK2]
          Length = 304

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 135/303 (44%), Gaps = 23/303 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTEQ 62
           + LR F    R  SF+ AA +L+++ +++ + +  LE  +G  LF+R + G   L  TE 
Sbjct: 8   NALRAFEASTRHQSFSAAAAELNVTPAAVGQLVRSLEASLGTPLFHRSSGGRARLVATEA 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             +        + +L      L+E+S   SG L +  +       L   +  F   +PD 
Sbjct: 68  AERALPDIRAGFDRLSLGLARLKEASA--SGVLTVTVSPAFAAKWLLPRIDRFQAAWPDT 125

Query: 123 QIQLILDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            ++L  + K +D      D  +R    R P     L+  KL+   ++   +P  L+  R 
Sbjct: 126 DVRLDTNLKPVDFIAQGVDIGVRYGAGRWP----GLVAEKLMGEEVYPVCSPGLLRQKRR 181

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISC---LQVNSYLSIMQYC 235
             +  +L K  LI   DL     + F +W   ++R +G   ++    +++N+  +++Q  
Sbjct: 182 LRNPADLAKETLIH--DLSVDGHDGFVSWDVWLER-VGVTTVATQRGMRINNSAAVLQAA 238

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + G G+AL    + +D+     LVR+  ++  T +   Y  Y        KL AFR+++ 
Sbjct: 239 IDGHGVALARSVMARDDLAAGRLVRLFPEIEFTSALAYYVVYRAECAGLPKLAAFRDWLV 298

Query: 292 LKA 294
            +A
Sbjct: 299 SEA 301


>gi|191636941|ref|YP_001986107.1| Transcriptional regulator [Lactobacillus casei BL23]
 gi|190711243|emb|CAQ65249.1| Transcriptional regulator [Lactobacillus casei BL23]
          Length = 292

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 19/241 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA +G  T AA+QLH++Q  +S Q+  LE E+G++LF R +RG+ LT  G +     
Sbjct: 9   FLAVAEAGQMTAAAKQLHMAQPPLSYQLKALEDELGVRLFERGSRGVRLTGSGQQFMTYA 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            ++   +   +   + S     G L +  T   G  L +  L+ F   YP ++  L  DN
Sbjct: 69  QQIVETVAAAENAARRSGEGEIGTLALGLTSSAGDVLPRQKLQAFNRRYPQVEFALYEDN 128

Query: 131 K--DID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               +D +  +  D AI +R P     L   +L + HM A AA    +     L+I +L 
Sbjct: 129 TYGILDKLRRNILDLAI-VRTPFNDDGLASCRLSSDHMIAVAAAS--QPLPATLTIPDLK 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +  LI    F  L      ++            P I+ L  +   + + +  +G G+AL+
Sbjct: 186 QQPLIVYRRFSSLFKTTFAEYGI---------TPTIAVL-CDDARTALHWAQMGMGVALV 235

Query: 245 P 245
           P
Sbjct: 236 P 236


>gi|170692553|ref|ZP_02883715.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142209|gb|EDT10375.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 325

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 112/260 (43%), Gaps = 17/260 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-LHR 68
            F  VAR+GS   A+E+L L+ S++S QIS LE+ +G  LFYR  RGL LT  G + L  
Sbjct: 38  AFESVARTGSVNRASEELGLTASAVSHQISNLESVIGQALFYRSGRGLVLTPTGERYLSD 97

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
           VT  +      T+     + V+    LR+ ++   G   L   L  F     DIQ+ L  
Sbjct: 98  VTGSLADLSRATERASSRTEVE---ILRVHSSPSFGLMWLLPRLASFQEANGDIQLNLAC 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE-LD 187
             +D+  +  Y D  IR         L  R L    +   A+P YL+N   P++  E L 
Sbjct: 155 SYEDVSFTSGYYDIDIR-HGYANWRDLEVRTLRNEFIAPLASPAYLRN--HPVNAPEDLL 211

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H LI     + +  +   W      P            SY+S ++   LG GIAL    
Sbjct: 212 AHRLIYSETPLVQWKQ---WFGRTGVPAAHKTFDFSFDRSYMS-LETAALGLGIALESLM 267

Query: 248 IVKDNPNLVRIMEDVITPSF 267
           +       VRI E  + P F
Sbjct: 268 LAS-----VRIREGALVPVF 282


>gi|157369613|ref|YP_001477602.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321377|gb|ABV40474.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 309

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 130/295 (44%), Gaps = 26/295 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+ F VVA+  +FTHAA+ LHL+Q ++SRQI GLE ++G  LF R ARGLTLT QG+ 
Sbjct: 9   DVLKTFVVVAQRLNFTHAAQSLHLTQGAVSRQILGLEQQLGYPLFSRRARGLTLTPQGAM 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY---PDI 122
           L     +   +L+     L     +P G LRI          ++  L   + L    P++
Sbjct: 69  LLAPVQQALGQLDEA---LARVGAQP-GTLRIKCPT----CAMRWVLPRIIRLQNERPEM 120

Query: 123 QIQLILD-NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            I+L    +  +D   ++ D A+   +P Q   L    L    +     P YL +   P 
Sbjct: 121 HIELTASVSHGLDFGAEHFDAAVVFGQP-QGKKLRVHHLFDEILTPVCTPSYLPDLSRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---MQYCVLG 238
           +  +L    L+          +  +WL  + + +G+  +   +   + ++   M   + G
Sbjct: 180 TPADLADKTLLH------PTRDRRDWLLWL-KAVGQEALPSGKAQHFDTLDLAMSAALQG 232

Query: 239 SGIALLPDYIVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA+    +++++    RI+      +      Y  YPE       L    NF+
Sbjct: 233 FGIAIGDLCLLEEDIQAQRIVTPFPLSVASGAAYYLVYPERAVVPQALTELVNFL 287


>gi|59713954|ref|YP_206729.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59482202|gb|AAW87841.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 290

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 124/293 (42%), Gaps = 45/293 (15%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW + ++ +  V   GSF  AA QL+ S S+IS++I+ LE  VG++L  R  R +  TE
Sbjct: 1   MDWIESVKSYIKVVEEGSFNAAAYQLNTSGSAISKRINWLEERVGVQLLTRTTRSVHQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++       + +    E +  +  P+G L+I  T+ +G   +   L EFL  YP 
Sbjct: 61  AGLLFYQRARLQLDQWQHLVDETRAINQTPAGLLKIGATLAVGSKFIIKYLDEFLATYPK 120

Query: 122 IQIQLILD--------NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
           I++QLI          N D+ IS        R  + + + S     L   H   +A+  Y
Sbjct: 121 IKVQLITTLPGQVPEHNVDVFIS--------RELEQLNTFSYKATHLFEHHSGFFASKDY 172

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---------CLQ 224
           L     P +I EL  HN++ +G                +RPI E +++            
Sbjct: 173 LDKYGTPNNINELKAHNMLIWG----------------ERPIKEIKLTNNKRVTLRGNFA 216

Query: 225 VNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
             +  ++      G GI L    +V D+     LV I+ ++ T    V   YP
Sbjct: 217 TTNPEALFHAAKRGMGILLTSQQMVIDDLQSGALVPILPEITTDHTRVNAYYP 269


>gi|161520237|ref|YP_001583664.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353585|ref|YP_001949212.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|2062564|gb|AAB53621.1| LysR-type beta-lactamase transcriptional regulator [Burkholderia
           cepacia]
 gi|160344287|gb|ABX17372.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337607|dbj|BAG46676.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 300

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 14/241 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT A  +L ++Q+++S+Q+  LE  +G  LF R  RGL LT++G  
Sbjct: 11  NALRAFESSARHLNFTRAGLELSVTQAAVSQQVRALEERLGCALFTRLPRGLDLTDEGRA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+ + ++ET   +     ++    L +  T  LG   L   LK F   +P ++++
Sbjct: 71  LLPVLSDAFSRIETVLQQFDGGRLRQVLTLGVVGTFALG--WLMPRLKRFRDTHPFVELR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N  +D++ +  D AIR  +    ++  +R L    + A  AP   +   +P    +
Sbjct: 129 LRTHNNVVDLAAEGLDFAIRFGQGNWPATRNER-LFDAPLTALCAPEIARRLTQP---AD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L+       +      WL   D    EP  ++    +S   +++  + G GIAL 
Sbjct: 185 LAHETLL-------RSYRTDEWLGWFDAAQLEPWTVNGPVFDSSRLMVEAAMQGMGIALA 237

Query: 245 P 245
           P
Sbjct: 238 P 238


>gi|299069950|emb|CBJ41235.1| Putative glycine cleavage system transcriptional activator (Gcv
           operon activator)(gcvA) [Ralstonia solanacearum CMR15]
          Length = 296

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 125/298 (41%), Gaps = 22/298 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   AR GSFT AA++L L+QS++ RQ++ LE  +G+ LF R  R L LT+ G +  
Sbjct: 11  LQAFEASARLGSFTRAADELALTQSAVGRQVAALERRLGVPLFTRVRRRLVLTDAGREY- 69

Query: 68  RVTSEVYHKLETTQIELQE-SSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              + +   LE  Q + Q  S+ +  G  L IA       + L   L EF  L+PDI + 
Sbjct: 70  --AARIRRHLEQIQRDTQALSAGRQMGYILEIAVVPTFATHWLIPRLAEFARLHPDITVN 127

Query: 126 LILDNKDIDISMDYADCAIRLRK---PIQSSSLI--QRKLVTIHMHAYAAPHYLKNCREP 180
           L              D AI       P    + +  +  +V +   AY A H   +    
Sbjct: 128 LASRTLAFSFQECAYDAAIYFGDQFWPDTKGTFLFPEGPMVPVCSPAYLAAH---DVSSE 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +    +L T  +   +      W  TV    G PR        +  ++   V G G
Sbjct: 185 AGFAQCRHLHLSTRANAWREWYTAQGWDYTVGASRG-PRYEL-----HTMVVAAAVAGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + L+P  ++    +   LV  +E  +  +   YF YPE +  +  L AF  ++   AR
Sbjct: 239 MGLVPRLLIGTELETGQLVVPVERSLAVTQGYYFAYPEGVGPSEALGAFERWMLSVAR 296


>gi|296162718|ref|ZP_06845503.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887034|gb|EFG66867.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 292

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 14/255 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G  
Sbjct: 8   NALRAFESSARHLSFTRAALELNVTQAAVSQQVRTLEERLGTALFKRLPRGLAMTDEGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V ++ + ++E    + +         + +  T  +G   L   LK F   +P ++++
Sbjct: 68  LRPVLTDAFDRIEAVLKQFEGGHFHEVLTVGVVGTFAVGW--LMPRLKSFRDAHPFVELR 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N  +D++ +  D AIR        SL  R L+   +     P       +P   ++
Sbjct: 126 LLTNNNLVDLATEGLDFAIRFGDGTWPGSLATR-LLDAPLALLCTPEIAARLSKP---ED 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L+       +  +  +W A    P   PR I     +S   +++  + G+GIAL 
Sbjct: 182 LANETLLRSY----RADDWISWFAAAGIP---PRPIRGPVFDSSRLMVEAAMQGAGIALA 234

Query: 245 PDYIVKDNPNLVRIM 259
           P  +     N  R++
Sbjct: 235 PALMFDHEINTGRLV 249


>gi|91781815|ref|YP_557021.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91685769|gb|ABE28969.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 310

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 13/195 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS--- 64
           LR F  VAR G  T AA +LH++ S++S+QI  LE  +G+ LF R ARGL LTE+G    
Sbjct: 10  LRCFEAVARLGGVTQAARELHVTHSAVSQQIKVLEESMGVALFMRAARGLRLTEEGRLYA 69

Query: 65  -KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     ++ H     Q    ES      +L I T     Q+ L   L  F   +P  +
Sbjct: 70  LDIRMALRDITHATRRAQARPHES------ELVITTLPSFAQHWLVPRLASFRDAHPYYR 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY--LKNCREPL 181
           I+L+   +  D     +D  IR+ +      + Q+KL    M   AAPH+    + R P+
Sbjct: 124 IRLLTSLQVEDFRQGVSDIGIRMGQG-HWPDVAQQKLFDDEMVVVAAPHFALAPDGRFPV 182

Query: 182 SIQELDKHNLITFGD 196
           +  ++    LI+  D
Sbjct: 183 TAADVMACPLISSPD 197


>gi|116749340|ref|YP_846027.1| LysR family transcriptional regulator [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698404|gb|ABK17592.1| transcriptional regulator, LysR family [Syntrophobacter
           fumaroxidans MPOB]
          Length = 308

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 14/252 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F VVA   SF  AA QLH +QSSIS QI  LE E+G++LF R  + + LTE G +L
Sbjct: 5   QLKTFRVVANLLSFNKAAGQLHYAQSSISAQIQILEEELGVQLFDRLGKRVQLTEAGVRL 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  +++   ++ T   +   + +P+G L I     LG   L   L+EF   +P +++  
Sbjct: 65  LQYANKILDLVDETNSMVNRVN-EPTGSLTIRIPETLGVRRLPAVLREFHSRFPRVRLNF 123

Query: 127 I---LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I   L+  D D+     D A  L + I ++ L    L    +   AAP +      PL+ 
Sbjct: 124 ITCALEGLDKDLRKGITDLAFLLAESINAADLDMATLGFEPVVLVAAPDH------PLAA 177

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS--IMQYCVL-GSG 240
           +    H     G  I     D ++   +++ + +  ++      + S  ++++CV+ G G
Sbjct: 178 KR-KVHTRDLTGSTILLSRVDCSYRKVLEQILEQEEVTRFNRFEFSSVEVIKHCVMAGVG 236

Query: 241 IALLPDYIVKDN 252
           I++LP   V ++
Sbjct: 237 ISVLPSIAVAED 248


>gi|269961086|ref|ZP_06175455.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
 gi|269834305|gb|EEZ88395.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
          Length = 314

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 130/293 (44%), Gaps = 17/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  +FT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVIFSALIKHKNFTAAAKSLGVSVSHVSKQLSQLEASLGIKLVQRTTRSFTPTEAGQTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +V   + +  +E++    + +G +R+  +   G   +   ++E    YP +Q+++
Sbjct: 68  YHHCEQVVQAVSSATLEMESQRDEVAGLVRLGLSQSFGTLHIIPAIQELREKYPQLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +    + QR L        A+P YL     P+   +L
Sbjct: 128 HLFDYKVDMLEEGLDLWITNNEHLPEGYIAQR-LADCQFVVAASPDYLLKHDTPIEPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLGSGI 241
            +HN + +         D+   A  +R   E  ++     +Y      ++    + G GI
Sbjct: 187 SQHNCLIYRSW----ERDYTSWAFTNR---EQELNVKVSGNYSVDLAEAVRDAAIAGWGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L  Y++ D   +  L++++ D   + S   Y  YP       K+ A   FI
Sbjct: 240 AYLATYLLGDEFRSGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVIEFI 292


>gi|229065278|ref|ZP_04200558.1| HTH-type transcriptional regulator czcR [Bacillus cereus AH603]
 gi|228715997|gb|EEL67733.1| HTH-type transcriptional regulator czcR [Bacillus cereus AH603]
          Length = 286

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 117/253 (46%), Gaps = 30/253 (11%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D+  L++F  VAR  + T AA  L+  QS+++ +I  LE E+   LFYRHARG+TLT 
Sbjct: 4   TLDFRDLKIFQTVARVQNITAAARNLNYVQSNVTARIKLLEQELNTLLFYRHARGITLTG 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIAT--TIDLGQNLLQGNLKEF---- 115
            G    +  +++  + E  Q    + +  P+G L I T  T+     +L    K+F    
Sbjct: 64  DGQIFLKKVNKLLKEFEELQNTFTDDN-NPTGLLNIGTVDTVHPLPTILASYHKQFPNVD 122

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           + L  D+  +LILD   ++  +D A        PIQ SSL Q K+ T  +  ++      
Sbjct: 123 ISLKTDVSQRLILD--ILEFKLDGAFVT----SPIQDSSLEQYKVSTKTLVLFSN----- 171

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIM 232
             R    IQ+L     + F    P C   F    WL   D  I   +I  ++ N    I+
Sbjct: 172 --RLTFDIQDLKNETFLVFS---PGCGYRFVLEKWLK--DEGILLKKI--MEFNMLEMIL 222

Query: 233 QYCVLGSGIALLP 245
               LG GI +LP
Sbjct: 223 HSVSLGLGITVLP 235


>gi|194292037|ref|YP_002007944.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225941|emb|CAQ71888.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 311

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 137/280 (48%), Gaps = 16/280 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L  F  V  SGS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELLAFATVVDSGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E+ + ++     KPSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGQAFLQDARAIIDSVESAEEQMLARREKPSGRLRVDAASPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D A+R+ + ++ S+L  R +    +   A+P YL     P
Sbjct: 121 QVELELNSNEGIIDLLERRTDVAVRIGR-LKDSTLHSRLIGNSRVRMLASPAYLDAHGHP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RIS-CLQVNSYLSIMQYCVLG 238
              Q+L KH L+ F    P+ +  +  L     P GEP RI   +  +S  ++ Q  + G
Sbjct: 180 RKAQDLGKHALLGFNQ--PESLNLWPILG----PDGEPYRIEPAVWSSSGETLRQLALEG 233

Query: 239 SGIALLPDYIV---KDNPNLVRIM----EDVITPSFTVYF 271
           +GI  L D++    ++   LV+++    +DV  P   VY+
Sbjct: 234 AGIVCLSDFMTAHDREAGRLVQVLARQTQDVRQPIHAVYY 273


>gi|148557161|ref|YP_001264743.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148502351|gb|ABQ70605.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 312

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 9/283 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V  +GSF+ A  +L++  S+IS+ +S LE ++  +L  R  + L+++E G + +
Sbjct: 19  LRAFVAVVEAGSFSEAGYRLNVMPSTISKHVSFLEEKIHGQLIVRSTKHLSVSELGRRFY 78

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E T+ E+ E  ++P GKLRI          L   +  FL  YP I +   
Sbjct: 79  DRCLIILKEVEETEAEMLEYQMEPQGKLRITMGPSFAGYHLPRLIPSFLERYPKISLDFR 138

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  + +D+     D A+R+   ++   LI  KL         +P Y++    P   ++L+
Sbjct: 139 VTPELVDLIDHSIDVAVRISSNLE-PGLIAVKLAPNIRSVCVSPAYVEKFGMPAEPRDLE 197

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPD 246
            HN +    L  +      W    D       +S   V ++  I +  +L G GI  L  
Sbjct: 198 SHNCL----LTNEASSTAKWRLLQDGVENVVHVSGNLVVNHGDIYKQAILDGVGIGHLSR 253

Query: 247 YIVKDNPNLVRIME---DVITPSFTVYFCYPEALKNTGKLKAF 286
           Y+V    N  R++E   D    +  +Y  YP+      K + F
Sbjct: 254 YLVYQEINDGRLIELFPDRGVINSFIYVVYPQRRNLPLKTRVF 296


>gi|49480321|ref|YP_037589.1| LysR family transcriptional regulator [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49331877|gb|AAT62523.1| transcriptional regulator, LysR family [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 283

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 140/312 (44%), Gaps = 51/312 (16%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L VFY VA+  + +HAA+ L+  QS ++ ++  LE E+G+ LFYR+ +G+TLT  
Sbjct: 1   MDIKDLTVFYEVAKENNISHAAKNLNYVQSGVTMRMKQLENELGVPLFYRNGKGVTLTSN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++ H ++ +   +Q +  KP G L+I  T       L   L  +   YP  
Sbjct: 61  GEILLTYAKQIIHLMDQSIKAVQSNGTKPKGTLKIGCTESTTAVRLPSILTTYYEKYP-- 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-----------VTIHMHAYAAP 171
           +++LIL+        +  +  IRL        +++RKL             +H + +   
Sbjct: 119 EVELILET-------NTTEQLIRL--------VLERKLDGAFIAGSTQHAELHTNVFREE 163

Query: 172 HYLKNCREPL-SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
             +   ++PL S+++++  NL+ F  G      +ED  WL   D  I   R+  L+  + 
Sbjct: 164 ELVLISKKPLSSLKDIEDMNLLAFSHGCYYRSLLED--WLQEED--ISPKRV--LEFGTI 217

Query: 229 LSIMQYCVLGS-GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            +I+  CV  S G+A++   I+K + + V             +   P + K        R
Sbjct: 218 EAILA-CVKSSMGVAIMMKSILKGHEHNVS------------FNPLPNSFKKVPTTFITR 264

Query: 288 NFIFLKARDWKF 299
           N IF  A   KF
Sbjct: 265 NDIFRSAALQKF 276


>gi|107027706|ref|YP_625217.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693582|ref|YP_839115.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897080|gb|ABF80244.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651582|gb|ABK12222.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 298

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 123/304 (40%), Gaps = 34/304 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F   A+  +F++AA +L L+ S++SRQI+ LE   G+KLF R  RGL LT  G   
Sbjct: 10  ELHAFATSAKYLNFSYAARELGLTPSAVSRQIANLEALFGVKLFVREGRGLALTRAGQVY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H        ++    IEL  S+ + S  L IA+        L   L  FL   P + +  
Sbjct: 70  HARVVGPLREIGNASIELL-SARENSDLLTIASVPTFTTKWLLPRLTRFLAAAPGVTLSF 128

Query: 127 ILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
                  D+     D AIR      + ++S  L  R  V +    +A  H L    +  +
Sbjct: 129 RRHLAPGDVFPFGLDAAIRYGDGGWEGVRSDYLGGRTFVPVCSREFADRHALHVPADAAA 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYC 235
              L                 +  W A  +R        +  PR        Y  ++Q  
Sbjct: 189 APRLVHEQ------------AEIAWSAWAERHRATQMNALAGPRF-----EQYSVLIQAA 231

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP----SFTVYFCY-PEALKNTGKLKAFRNFI 290
             G GIAL+P +++ DN     ++E    P    +   Y CY PE L  +  L+ FR ++
Sbjct: 232 QAGLGIALVPRFLILDNLAAGTLVEPFDAPVDVDAQGHYLCYAPERLDTSDALRRFREWM 291

Query: 291 FLKA 294
             +A
Sbjct: 292 LDEA 295


>gi|46201846|ref|ZP_00054244.2| COG0583: Transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 311

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 1/197 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + + +F  V   GSF+ AA +L +  ++ISR++  LE  +G +L  R  R L+ T
Sbjct: 1   MADRLEAMSIFVAVVDCGSFSGAARRLGVPLATISRKVGELEAHLGARLLARSTRKLSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +  ++   +         P G L I   I  G+  +   +  FL  YP
Sbjct: 61  EAGQSYLAACRRILEQVVEAERAAAGEYATPKGDLVITAPIVFGRLHVLPVVAAFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L L ++ + +  D+ D A+R+   +    L+   L ++H    A+P YL     P
Sbjct: 121 EIHVRLALSDRWVHLLDDHVDVAVRV-GALSDGGLMAMGLGSVHRVVCASPSYLAVRGIP 179

Query: 181 LSIQELDKHNLITFGDL 197
              ++L  H+ ++F  L
Sbjct: 180 HHPKDLADHDCVSFDAL 196


>gi|262043098|ref|ZP_06016237.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039549|gb|EEW40681.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 155

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 85/148 (57%), Gaps = 3/148 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F WD  R+F  +AR+G+ + AA+++++  +++SR++  LE  + + LF RH  G  LT+ 
Sbjct: 5   FHWDDARIFLAIARAGTLSGAADKMNMGIATVSRRLDRLEQALNVPLFSRHQSGYRLTDD 64

Query: 63  GSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G  L  R  +  Y  L   +    +  V  +G +R+AT+ +L  + +  +LK  L  YP+
Sbjct: 65  GEALFARAEALEYAGLAFGEAAQLQGHV--AGLVRLATSDNLATHFILPSLKGLLDHYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKP 149
           ++++++   + +++    AD AIR+ KP
Sbjct: 123 LRVEVLSGVQPVNLHRRDADLAIRMVKP 150


>gi|240947921|ref|ZP_04752355.1| LysR family transcriptional regulator [Actinobacillus minor NM305]
 gi|240297784|gb|EER48231.1| LysR family transcriptional regulator [Actinobacillus minor NM305]
          Length = 290

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 135/295 (45%), Gaps = 17/295 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L +F  V + GS + A+E+L++  ++ISRQI+ LE  + I+LF R   G+  T  G
Sbjct: 2   NLNALSLFVSVVQDGSLSKASERLNVPIATISRQITELEKSLNIQLFDRKKSGVKPTMAG 61

Query: 64  SKLHRVTSEVYHKLET-TQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            KL+    +VY  ++   Q+E   S  +  SG LRI+T   L +  +   L EF   YP 
Sbjct: 62  QKLYE---QVYQNIDNLLQVEKAFSEHQEISGTLRISTFTGLEE--VWAWLDEFGTKYPK 116

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I   + ++ +D+  D  D A R    + + + + R ++T      A PH L     P 
Sbjct: 117 VSIHCQVTDRVLDLVEDNIDFAFR-AGDLHTDNAVARLVLTAKAKCVAHPHLLAQYGTPT 175

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +   + F     K  +    +   ++ +  P +     N   +I  +   G G+
Sbjct: 176 TPDDLARFPCVGFA----KAQQKHLSIQLENKTLHLPYV--FASNDVYAIAYFIQQGRGV 229

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             L + I     D   LV ++ D    ++ V+  Y +    +  ++AF +F+  K
Sbjct: 230 GYLSENIANRLIDEYGLVEVLHDYPMRTYPVHLLYLKHRYPSSVMRAFLDFVMEK 284


>gi|107099432|ref|ZP_01363350.1| hypothetical protein PaerPA_01000444 [Pseudomonas aeruginosa PACS2]
 gi|116054177|ref|YP_788621.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889188|ref|YP_002438052.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254237321|ref|ZP_04930644.1| hypothetical protein PACG_03392 [Pseudomonas aeruginosa C3719]
 gi|296386945|ref|ZP_06876444.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|115589398|gb|ABJ15413.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126169252|gb|EAZ54763.1| hypothetical protein PACG_03392 [Pseudomonas aeruginosa C3719]
 gi|218769411|emb|CAW25171.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 302

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 128/305 (41%), Gaps = 39/305 (12%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AAE+L L+QS+I RQI+ LE  +G++LF R  RG+ LTE G    R  
Sbjct: 14  FESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGVKLTEAGLSYSRRV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL---- 126
           +     +E   + +     +  G + +A     G   L   LK F  L+P++ + L    
Sbjct: 74  AVRLDAVERDTLAVM--GHQGGGAIELAVVPTFGTQWLLPRLKRFQRLHPEVTVNLTNRT 131

Query: 127 ---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +  + + D ++ + D           S  +   L+  +     +P  L   R  LS 
Sbjct: 132 RPFLFADTEFDAALYFGDA--------DWSGTVSHFLMRENPVPVCSPELLGG-RRTLSA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYCV 236
           ++      +    L+ +    + W          V   +  PR     +     + Q  +
Sbjct: 183 EQ------VAGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFSM-----LAQAAM 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+AL+P ++++D   +  L+  M+         Y   PE    +  L AFR+++  +
Sbjct: 232 HGMGVALIPPFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEE 291

Query: 294 ARDWK 298
           AR ++
Sbjct: 292 ARQYR 296


>gi|284042065|ref|YP_003392405.1| LysR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946286|gb|ADB49030.1| transcriptional regulator, LysR family [Conexibacter woesei DSM
           14684]
          Length = 315

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 115/261 (44%), Gaps = 24/261 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +LRV   VA  GSF+ AA  L L+QS++S+ ++ LE EVG +L  R  R + LTE 
Sbjct: 2   IDVRRLRVLREVAVHGSFSAAAHALTLTQSAVSQHVATLEREVGQRLVERGTRPVELTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R  + ++ +L+  + EL E + +  G+LR  T       L+    + F   +PD+
Sbjct: 62  GYALTRHATGIFARLDDAEQELAEIAGRRHGRLRFGTFPTALATLMPPAFERFGRTHPDV 121

Query: 123 QIQLI----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAP 171
            + ++          L+  ++D+++ Y   A+     I +  L +  L      A   A 
Sbjct: 122 TLTVVDDHLQRLVPRLETGELDLALIYDHEAL---PEISARDLERMPLADDPFQAVLPAG 178

Query: 172 HYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSY 228
           H L   R PL + +L     I           +  W    A   R  G    + L  + Y
Sbjct: 179 HRLARRRRPLELSDLSGEPWI-------GGSPNSAWYRITAHACRLAGFTPHASLASDDY 231

Query: 229 LSIMQYCVLGSGIALLPDYIV 249
           +++      G G++L+P   V
Sbjct: 232 IAVQALVAAGLGVSLIPGLAV 252


>gi|326317829|ref|YP_004235501.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374665|gb|ADX46934.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 299

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 142/310 (45%), Gaps = 47/310 (15%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   LR F  VA+  +F  AA+ L +++S++S+ I  LE  +G+ L  R  R + LT
Sbjct: 1   MPADLQLLRFFLAVAKEQNFRAAADHLGVTRSAVSQGIRRLEDGLGVALVQRSTRHVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSV-KPS-GKLRIATTIDLGQNLLQGNL-KEFLL 117
           E G +LH    ++   L      L+E++   P+ G LR+A T  + +  L G L   F  
Sbjct: 61  EAGERLH---GQIAGPLSAVHAALEEAATDGPARGLLRVAAT-SIAERFLSGPLIASFAQ 116

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAP 171
            +P + + + + +++ DI     D  +RL + I+   +       QR++V       A P
Sbjct: 117 AHPGVTLDITVTDEESDIVAAGFDAGVRLGEVIEQDMVAVPLTGPQRQMVV------ATP 170

Query: 172 HYLKNCREPLSIQELDKHNLITF---GDLIPKCME------DFNWLATVDRPIGEPRISC 222
            YL     P   ++L  H  I +     + P   E      DF+ LA       EPRI+ 
Sbjct: 171 QYLAAHGRPRHPRDLLAHACIGWRPAPGVAPYRWEFREDGRDFD-LAV------EPRITT 223

Query: 223 LQVNSYLSIMQYCVLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEAL 277
              N  L +++  + G+GI +        YI +    L  ++E+ + P F  ++ Y  + 
Sbjct: 224 ---NDMLLMIRTALAGAGITIGMEETFAPYIARG--ELEPVLEEFL-PRFPGFYLYFPSR 277

Query: 278 KNTG-KLKAF 286
           +NT  KL+A 
Sbjct: 278 RNTPRKLRAL 287


>gi|254299820|ref|ZP_04967268.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157809733|gb|EDO86903.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 301

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 13  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G   + T        L   L +     P + ++ +
Sbjct: 73  AAVRQSLDALRAATADIR--SRRANGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVR-V 129

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
           + ++DID   ++AD AI           S+ L Q  +  +   A+   H          R
Sbjct: 130 VTSQDIDPQREHADVAILFGAGDWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLLR 189

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 190 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 238

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 239 NQGVALGWAPLV-DTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 295


>gi|83645111|ref|YP_433546.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83633154|gb|ABC29121.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 298

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 20/248 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F   AR  SFT AA +L ++Q+++S Q+  LE  + +KLF R  RGL +T +G  
Sbjct: 9   NAIRAFEAAARHLSFTQAAIELCVTQAAVSHQVKVLEERLNVKLFKRLPRGLMITPEGEA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    ++ + ++      L+   V+    L +  T  +G   L   L +F   +P ++I+
Sbjct: 69  LLPTVNQAFDRMSEALSRLEGGQVREVLSLGVVGTFAVG--WLLPRLADFQQQHPFVEIR 126

Query: 126 LILDNKDIDISMDYADCAIRLRK----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           L  +N  +DI+ +  D AIR        + ++ L +  L  + + A A         E L
Sbjct: 127 LSTNNNRVDIAAEGLDYAIRFGDGAWHGVDAAPLFEAPLTPLCIPALA---------ETL 177

Query: 182 SIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              E L  H L+       +  E  NW A          I  +  +S +++M+  + G G
Sbjct: 178 CTPENLSGHTLLRSY----RANEWSNWFAAAGMAQPANLIKGIVFDSSIAMMEAALQGVG 233

Query: 241 IALLPDYI 248
           +AL P  +
Sbjct: 234 VALAPPLM 241


>gi|254250248|ref|ZP_04943568.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124876749|gb|EAY66739.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 290

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FD D+LR F  VA +GS T AA +LHLSQS++S Q+  LE+  G+ LF R  RG+  T 
Sbjct: 3   GFDLDQLRTFAAVADAGSLTAAAPRLHLSQSTVSEQVRKLESRAGVPLFVRSKRGVEPTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L +    +    E    EL+  ++K  G+LR+A T     N + G L      YP 
Sbjct: 63  AGARLLQHARRIVALNEAAFDELRGQAIK--GELRVAITDYYRTNEVAGMLARLRECYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRL 146
           + +  +   K  +I   +A   I L
Sbjct: 121 LSLH-VSAMKSAEIEAAHARGQIDL 144


>gi|319792200|ref|YP_004153840.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594663|gb|ADU35729.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 288

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 10/187 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD   LR F  V  +G FT AAE+LHL+QS++S QI  LE +VG +L +R  R LT+T
Sbjct: 1   MDFDPTLLRAFVAVKETGGFTRAAERLHLTQSAVSHQIRKLEEQVGRQLLHRTTRRLTVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    R   ++   L+      Q S +  +G +R     +   + L   L +F   +P
Sbjct: 61  EDGEDFLRYAQQILDTLDAMTRRFQPSPI--TGVVRFGVPDNFMGDRLPPLLSQFARAFP 118

Query: 121 DIQIQLILD-NKDIDISMDYA--DCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLK 175
            +++++ +  + D+  ++     D A+ +  P   + + L + +LV      + AP   K
Sbjct: 119 AVRMEVCVSMHTDLRAAIRSGELDLAVVMSPPNVAEGTCLRRTQLVWAAAETFEAP---K 175

Query: 176 NCREPLS 182
               PL+
Sbjct: 176 GASLPLA 182


>gi|307317489|ref|ZP_07596929.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306897078|gb|EFN27824.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 324

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 130/293 (44%), Gaps = 15/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V R G F  AA    +S S+IS+ IS LE  +GI+L  R  R +  TE G +
Sbjct: 29  DSLEIFEDVVRCGGFRAAALGRGVSSSAISQSISVLEEALGIRLLNRTTRSVAPTEAGEQ 88

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L        +++ T   +L +   +PSG +RI        ++L     EF+ +YPD+ ++
Sbjct: 89  LLERLRPALYEIRTAVDDLNQLRERPSGTVRINAPGPAADHVLCPLTFEFMKIYPDVNVE 148

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ D   IDI     D  +R    +    +       +     A+P YL+    P S ++
Sbjct: 149 IVSDAAIIDIVEQGFDAGVRFGNQLAQDMIAMPLGPALRYAIVASPDYLRKRGRPHSPRD 208

Query: 186 LDKHNLI----TFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +H+ I      G ++  K   D + +     P G      L ++S    +Q  + GSG
Sbjct: 209 LLQHDCIRRRFPGGTMVTWKFARDGDEVEIT--PKGR-----LTLSSAHQELQAALAGSG 261

Query: 241 IA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L  DY+  D     LV ++ D      + Y  YP     +  ++AF  +I
Sbjct: 262 IAHLFEDYVRDDVEQGRLVELLCDWKQKLPSWYLYYPSRRHTSAAMRAFLEYI 314


>gi|197294909|ref|YP_002153450.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195944388|emb|CAR56989.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 296

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 123/291 (42%), Gaps = 17/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 13  LLVFEAAARHESYTRAADELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L  F   +P + + L 
Sbjct: 73  AELSGALGRIRGATLQAM-SHQAGAGTLRLATLPTFGSKWLLPHLHGFYAAHPGVTVHLH 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP----HYLKNCREPLSI 183
                +D   D  D AI +        L   +L    + A A P        + R P   
Sbjct: 132 SRIGALDFLNDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIAPPDAGGRRKADARTPAWA 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
               K  L+          E F+      R +   RI    ++ S+L  +Q    G GI 
Sbjct: 191 A---KQTLLGVTSNQQAWAEWFSHYRLDHRQM---RIGPSFELTSHL--IQAVRAGMGIG 242

Query: 243 LLPDYIVKDNPNLVRI--MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L+P  +V+D  +   +  + D IT   + Y  YP   +    L AFR ++ 
Sbjct: 243 LVPKVLVEDELSRGELDSIGDAITSQRSYYLVYPPGNETLPSLVAFREWLL 293


>gi|253690105|ref|YP_003019295.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756683|gb|ACT14759.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 294

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            R F   A++GSF  AAE LH++  ++SRQI  LE  +G++LF R  R + L   G  LH
Sbjct: 9   FRFFEAAAQTGSFVKAAESLHVTHGAVSRQIRLLEEALGVELFERRNRAIFLNAAGRSLH 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            VT  V+ +LE     LQ+S+      L    TI +    L   L  F    PDI++ L+
Sbjct: 69  TVTQSVFEQLEGAVYRLQQSAQDDVLTLSCEPTIAM--KWLIPRLPAFNQANPDIKLHLV 126

Query: 128 LDNKDIDISMDYADCAIR 145
                ID      D A+R
Sbjct: 127 AAGGPIDFVRSGVDLALR 144


>gi|309390051|gb|ADO77931.1| transcriptional regulator, LysR family [Halanaerobium praevalens
           DSM 2228]
          Length = 296

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 75/126 (59%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +++  +VFY VA + SF+ AAE+L +SQS++S+ I  LE E+  KLF R  + + LT
Sbjct: 1   MLLNFELYKVFYQVASNLSFSKAAEKLFISQSAVSQNIKNLEKELKTKLFIRSTKNVELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + GS L +     ++ +E  +  L+E +    G++ I     + ++ L   LK+F  LYP
Sbjct: 61  QAGSLLLKHIEPAFNLIENGEKSLREINDLKRGEIHIGANDTIAKDYLLPYLKKFHQLYP 120

Query: 121 DIQIQL 126
           +IQIQ+
Sbjct: 121 EIQIQI 126


>gi|296448013|ref|ZP_06889918.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
 gi|296254467|gb|EFH01589.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
          Length = 299

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 129/300 (43%), Gaps = 12/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +  F  V     F  AA  L +S S ++R ++ LE  +G++L  R  R + LT+ G+
Sbjct: 4   FDTITAFIAVVDHKGFAPAARSLGVSASLVTRLVAALEERLGVRLLQRTTRSVGLTDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +   LE  +   +     P G+L ++  +  G+  +   +  ++  +P + +
Sbjct: 64  RFLERARRIVADLEEAERVAENERSAPRGRLSLSAPLMFGRMHIGPLIGRYMNAHPQLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +D+  +  D A+R+   +  S+L+ R++         +P YL+    P +  
Sbjct: 124 ELSLSDRFVDLVEEGFDLALRIGH-LSDSALVARRMGATRRVVVGSPAYLEARGAPTTPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H LI+   L       F W       I          NS  + + +     G+ + 
Sbjct: 183 DLERHRLISCTSLTSAGRWRF-WSDGERFDIDAA--PAYVTNSAEAAIWHAENNGGLTIA 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--DWKF 299
             Y + +      L  ++ D       ++F YP A   + K+   R+ I L AR  +W F
Sbjct: 240 AGYQIIELVRAGRLAVVLVDYEPTPLPIHFVYPSARLLSAKV---RSLIDLAARECEWTF 296


>gi|283835091|ref|ZP_06354832.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291069385|gb|EFE07494.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 302

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 1/189 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++   GSF+ AA+    + S+ISR  S LE  +G KL +R  R L L+E G  ++
Sbjct: 9   LATFVLIIDQGSFSAAAKASGATPSAISRSASRLEKALGSKLLHRTTRKLALSETGKIVY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+ H  +              G+L ++    +G+ ++   + EF   YP + ++L 
Sbjct: 69  AHAQEMLHAAQMAVDSGSSRQTIAQGQLTLSVPKAVGRFVIHPLMAEFFTRYPQVDVRLR 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  D  D A+R+ +   S  L  + L+ +     A P YL+    P   Q L 
Sbjct: 129 LEDRYMDLIDDGVDLALRISQS-PSPGLYGKPLMPVSHVICATPEYLRKYGTPEHPQALR 187

Query: 188 KHNLITFGD 196
           +H+ I+ G+
Sbjct: 188 EHSCISLGE 196


>gi|190572329|ref|YP_001970174.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190010251|emb|CAQ43859.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 303

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 1/183 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F   A +GS   AA  L +S +++ + I+ LE  +G++L  R  R L L+E G+   
Sbjct: 7   IRSFTRTAETGSIAAAARILGISATAVGQNINRLEAHLGVRLLNRSTRQLALSEAGALYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L   Q  +    ++P+G LRIA++   G+++L   L      YP +Q++L 
Sbjct: 67  AQVRHIEADLARAQAMVTAGDIEPAGPLRIASSSAFGRHVLAPLLPSLQQRYPQLQLELR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +    +  D +IR+   ++   ++ R+L  +     A+P YLK    P    +L 
Sbjct: 127 LTDRAVQHGPEAVDASIRIGAQLE-DGVVARQLARVPFVFCASPAYLKAHGVPQQPSDLG 185

Query: 188 KHN 190
            H 
Sbjct: 186 GHR 188


>gi|260770205|ref|ZP_05879138.1| hypothetical transcription regulator [Vibrio furnissii CIP 102972]
 gi|260615543|gb|EEX40729.1| hypothetical transcription regulator [Vibrio furnissii CIP 102972]
          Length = 327

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 140/296 (47%), Gaps = 17/296 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DK+  F VV ++GSF  AA++  +S ++ SR +  LE  + ++L  R  R L  T+ G  
Sbjct: 14  DKILFFCVVMQTGSFKAAAQRQGISAAAGSRWVKELEETLSVELIKRSTRQLAATQAGQL 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   + +  +++T    +Q  S +  G++R+++T    +  L   + E++ L+P +  +
Sbjct: 74  LYERFAPMIGEIDTLCEAVQNLSEQQQGEIRLSSTPLFARQYLTKIVAEYMALHPKVHFK 133

Query: 126 LILDNKDID-ISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++  + D +++D+A  A+     +P++ S LI+++L++  ++  A+  YL     P +
Sbjct: 134 IFIEAGEFDPLTIDFAFRALATYDGEPVEDSLLIRKRLLSEPLYLCASERYLTEAGTPTT 193

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLG 238
            Q L  H  +    L    +    W    D    +P I      L+ ++   ++      
Sbjct: 194 PQALKAHRCLYARTL----LGGNRWCFERDE---QPEIVTIRDALECDNSEMLLNLAQQS 246

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +GIA LP  +V+    +  L  +M      SF ++  Y        +  +F+ ++ 
Sbjct: 247 AGIAYLPHSLVEPCLRSGELHHVMPQYRCASFDIFLYYRPRHPMPERCASFKRYLL 302


>gi|254471263|ref|ZP_05084665.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211959409|gb|EEA94607.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 299

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 124/258 (48%), Gaps = 26/258 (10%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ LR F  VA  GSFT A+++  LS++S+S+Q+S LE ++ ++L YR  R L LTE G 
Sbjct: 6   WNGLRSFLAVAEHGSFTLASDETGLSKASLSQQVSQLEEQLDVQLLYRTTRKLRLTEIGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDL-GQNLLQGNLKEFLLLYPDIQ 123
           + + +      ++E       +++   +G +R+     L G+ L+   + E+    P I+
Sbjct: 66  RYYEMCRAGVKQIEDASDLASQATDSLTGPIRMNAVGGLIGEELIAPLVIEYQQANPGIE 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCREP 180
           ++L   +   D+     D  +R+   ++ S+LI RKL TI     A+P ++      R P
Sbjct: 126 VKLDFSSIREDLLETDFDLVLRM-GDLEDSTLIARKLHTITTRYVASPFFVAAHSKIRHP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYC 235
             ++ L           I   +++  W+ T     G+ RI        Q+++   + Q  
Sbjct: 185 SDLKGL---------PFISGSVQE--WIFTR----GQERIVVQAEKGFQISNGRVMCQAA 229

Query: 236 VLGSGIALLPDYIVKDNP 253
           V G GIA L D +  D P
Sbjct: 230 VAGLGIARLAD-VYTDAP 246


>gi|149374857|ref|ZP_01892630.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
 gi|149360746|gb|EDM49197.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
          Length = 306

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 131/298 (43%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L L +S +SR+++ LE+ +  +L  R  R  T+TE G
Sbjct: 3   DLNDLYYFVKVVDHGGFAPAGRALGLPKSKLSRRVAELESRLDTRLINRSPRVFTVTELG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R    +  + +  Q  +  S  +P G +R++    +   L+   +  F+  YP ++
Sbjct: 63  KEYYRHCLAMLVEADAAQEVIDHSRSEPVGSIRVSCPPGIIYFLVAPLIVRFMQQYPKVK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++   ++ ID+  +  D A+R+R  P++ S L  + L        AAP  +    +P++
Sbjct: 123 IEMEATSRRIDVVREGFDVALRVRYPPLEDSDLTMKVLSKNPQCLMAAPEVVAQYPKPIT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235
             +L K   I F         D   +  +D P G       +PR   L  +   ++++  
Sbjct: 183 PDDLSKLPSIDFEQW------DGQHVWCLDGPAGASVKIHHQPR---LVTDDVFTLLKAA 233

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V G G+  +P  +      + NLV I+ D        +  +P        ++AF +F+
Sbjct: 234 VGGLGVVKMPLIVGGQDLIDGNLVSILPDWRPRGGIFHAVFPSRRGLLPAVRAFLDFL 291


>gi|134280080|ref|ZP_01766791.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           305]
 gi|134248087|gb|EBA48170.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           305]
          Length = 311

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 132/303 (43%), Gaps = 35/303 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  G+FT AAE LH+SQ ++S+QI  LE  +G++LF R AR + LTE G+   
Sbjct: 6   IRYFLAVAEQGNFTRAAESLHVSQPTLSQQIRQLEGVLGVQLFDRSARAVRLTEFGAAYA 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATT-----------IDLGQNLLQGNLKEFL 116
           R       +LE  +  + +     SG LR+A T           ID G N    NLK  +
Sbjct: 66  RHARAALQQLEAGRRAVHDVENLQSGSLRLAMTPTFSAYLIGWLID-GFNARYPNLKLTI 124

Query: 117 LLYPDIQIQLIL--DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
              P  QI+ +L  D  D+ I+ D          P+   +L    LV    H +A     
Sbjct: 125 REMPQEQIEPLLADDELDVGIAFDATQSPEIETMPLWIETL---ALVVGRDHRHA----- 176

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS 230
              R+PLS  E     LI    L+ +    F     VD    R    PR++ ++VNS  +
Sbjct: 177 -RRRKPLSPDEAAGEPLI----LLSRA---FATRGKVDQYFHRNGVTPRVA-IEVNSISA 227

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++    G    +LP  I +   +L  I  D   P  T      +    +  ++AF + +
Sbjct: 228 MLEMVRGGRIATVLPSAIAERRDDLCAIRLDPPLPQRTAALLMRKGGYRSAAMRAFVDHM 287

Query: 291 FLK 293
             +
Sbjct: 288 LAR 290


>gi|78049769|ref|YP_365944.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78038199|emb|CAJ25944.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 300

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 13/199 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     +  F  VAR+G F  AA+   +S S+ S  I  +E  +G++LF R  R + LT
Sbjct: 1   MSGHLADMEAFVRVARAGGFREAAKSAGVSASTYSDAIKRMEASLGVRLFNRTTRSVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ L    +    +LE  +  +      P+G LR+   +   + +L   L  F+  YP
Sbjct: 61  DAGNALLARIAPALLELENAREVVSAFRDTPTGTLRLNVPVSAARLVLPRILPAFMAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-------HMHAYAAPHY 173
           DI ++++ +   +D+     D  IR          +Q+ +V I        +   AAP Y
Sbjct: 121 DITLEILTEESFVDVIAARCDAGIRY------GERLQQDMVAIPIGPRVQRIATAAAPGY 174

Query: 174 LKNCREPLSIQELDKHNLI 192
           L     P   +EL  H+ I
Sbjct: 175 LDRRGRPTHPRELVAHDCI 193


>gi|126452840|ref|YP_001067699.1| DNA-binding transcriptional regulator CynR [Burkholderia
           pseudomallei 1106a]
 gi|167740213|ref|ZP_02412987.1| DNA-binding transcriptional regulator CynR [Burkholderia
           pseudomallei 14]
 gi|167825836|ref|ZP_02457307.1| DNA-binding transcriptional regulator CynR [Burkholderia
           pseudomallei 9]
 gi|226196872|ref|ZP_03792451.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           Pakistan 9]
 gi|242314747|ref|ZP_04813763.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           1106b]
 gi|254299281|ref|ZP_04966731.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           406e]
 gi|126226482|gb|ABN90022.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           1106a]
 gi|157809232|gb|EDO86402.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           406e]
 gi|225931132|gb|EEH27140.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           Pakistan 9]
 gi|242137986|gb|EES24388.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           1106b]
          Length = 311

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 132/303 (43%), Gaps = 35/303 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  G+FT AAE LH+SQ ++S+QI  LE  +G++LF R AR + LTE G+   
Sbjct: 6   IRYFLAVAEQGNFTRAAESLHVSQPTLSQQIRQLEGVLGVQLFDRSARAVRLTEFGAAYA 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATT-----------IDLGQNLLQGNLKEFL 116
           R       +LE  +  + +     SG LR+A T           ID G N    NLK  +
Sbjct: 66  RHARAALQQLEAGRRAVHDVENLQSGSLRLAMTPTFSAYLIGWLID-GFNARYPNLKLTI 124

Query: 117 LLYPDIQIQLIL--DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
              P  QI+ +L  D  D+ I+ D          P+   +L    LV    H +A     
Sbjct: 125 REMPQEQIEPLLADDELDVGIAFDATQSPEIETMPLWIETL---ALVVGRDHRHA----- 176

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS 230
              R+PLS  E     LI    L+ +    F     VD    R    PR++ ++VNS  +
Sbjct: 177 -RRRKPLSPDEAAGEPLI----LLSRA---FATRGKVDQYFHRNGVTPRVA-IEVNSISA 227

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++    G    +LP  I +   +L  I  D   P  T      +    +  ++AF + +
Sbjct: 228 MLEMVRGGRIATVLPSAIAERRDDLCAIRLDPPLPQRTAALLMRKGGYRSAAMRAFVDHM 287

Query: 291 FLK 293
             +
Sbjct: 288 LAR 290


>gi|310639434|ref|YP_003944193.1| transcriptional regulatory protein [Ketogulonicigenium vulgare Y25]
 gi|308753010|gb|ADO44154.1| transcriptional regulatory protein [Ketogulonicigenium vulgare Y25]
          Length = 235

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 86/187 (45%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   SFT AA +L  SQS++S  +  LE  + ++L  R  R ++ TE G +L 
Sbjct: 4   LMAFLAVAEERSFTRAAARLGTSQSAVSAVVRRLEQRLDVRLLTRTTRAVSPTEAGQRLL 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 + ++E     L      PSG +++  +      ++       +  +PDI+I++ 
Sbjct: 64  DTLRPAFDEIEAQLSALDVMRTHPSGTIKLTASRRAALQIVMPVANRLMTEHPDIKIEIA 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D + +DI+ +  D  +RL + +    +  R    + M    +P Y +N   P +  +L 
Sbjct: 124 VDGRFVDIAKEGYDAGVRLGESLDRDMIGVRISPDLEMIVAGSPDYFRNNPVPRTPHDLA 183

Query: 188 KHNLITF 194
            HN +  
Sbjct: 184 GHNCVNL 190


>gi|271499952|ref|YP_003332977.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343507|gb|ACZ76272.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 289

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 136/289 (47%), Gaps = 13/289 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++  + F  V  +GSF+ A++++ +  S++SR+I+ LE E+ ++L  R   G+  TE+G
Sbjct: 2   DFNTTKWFIAVVNAGSFSVASDRMGVPISTLSRKINQLEQELNVQLLERSRHGVKPTEKG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K           LE  Q  +  S+    GKLR++   +   ++    L  F   YPDI 
Sbjct: 62  QKFFEQARLGVELLEDAQKSVI-SAHTLQGKLRLSVPPNF--SIWWNLLIAFQQRYPDIT 118

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +      + +D+  D  D A+R+   + + ++I + ++T+     A+P  L     P ++
Sbjct: 119 VFCHSSERVVDLFEDGIDVALRMGN-LNTDNVIAKPVMTVEALFVASPALLARYGTPQTL 177

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +E+ +  +  +  L       F W     +   EP  S    N+   ++ Y + G G+A 
Sbjct: 178 EEMARLPIAAWESL---HHGSFEWGRGSGKVKYEPAFSS---NNIQGLIHYALSGMGVAQ 231

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + D+ V+   ++  L+R++  +   S  ++  Y      +  ++A+ +F
Sbjct: 232 VLDFSVRPWLESSELIRLLPGITMQSLPLHLVYARHKHPSALVRAYLDF 280


>gi|163850543|ref|YP_001638586.1| carbonate dehydratase [Methylobacterium extorquens PA1]
 gi|163662148|gb|ABY29515.1| Carbonate dehydratase [Methylobacterium extorquens PA1]
          Length = 305

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 115/251 (45%), Gaps = 23/251 (9%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  +  +GS + A  Q  LS  ++SR+++ LE E+G++L +R  R + LT  G      
Sbjct: 8   LFCAIVSTGSLSAAGRQAGLSPMAVSRRLAALEHELGVRLIHRTTRSVALTADG------ 61

Query: 70  TSEVYHKLETTQIELQESSVKP--------SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             E +  L  T +E QE++           SG LR+     +G+ L+   +   +   P 
Sbjct: 62  --ETFLPLAQTMLEAQEAATAAFSEQHEGLSGVLRVTAPHRIGRALVVPLVVRLMAENPR 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +  +DI+    D AIR+   +Q+S L+  ++        AA  YL     P 
Sbjct: 120 LKVDLTFSDGIVDIAAAGIDVAIRV-ATLQASELVAVQVADNPRILCAATAYLAAHGCPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +LD H  +T        M+ + +      PI +     L  +S  ++   CV G+G+
Sbjct: 179 RLADLDAHACLTL-----HAMDAWTFR-QAGHPIAKRIKGRLAASSVDTVHAACVAGAGL 232

Query: 242 ALLPDYIVKDN 252
           ALL  + V+ +
Sbjct: 233 ALLTYWDVEQD 243


>gi|127511170|ref|YP_001092367.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126636465|gb|ABO22108.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 305

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 123/270 (45%), Gaps = 12/270 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AAE L  ++S++S+ +S LE ++G+KL  R  R L LT QG  +
Sbjct: 16  QMLVFDEVVNQGSFTAAAEALGHTKSAVSQYVSQLEQDLGVKLLTRSTRQLHLTTQGEAM 75

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            + + +++  L  T     +    P G++ I   +     LL   + E    +P +  ++
Sbjct: 76  AQRSRQLWRLLTETLEAAHDQQAVPGGRMAITAPLAFEAPLLTPIIAELCGEFPQLLPEM 135

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             D+  +DI     D AI +  P + S      +  +     AAP Y+ N    ++ + L
Sbjct: 136 HYDDARLDILQHNLDMAISV-GPQKDSGYHAIPIGRLDSVLVAAPSYI-NRSAAITAESL 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+LI      P  ++  + LA             ++VN+ +S +   + G GIAL+P 
Sbjct: 194 RGHSLIVLPWQRPLVLQGPSGLAF-------EAAKEIKVNTSISAINSAIAGVGIALVPS 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCY 273
             ++       L R++ +   PS  V+  +
Sbjct: 247 IFIETELAEGKLQRVLPEHSGPSREVFAIH 276


>gi|89899687|ref|YP_522158.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344424|gb|ABD68627.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 314

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 126/288 (43%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  S + AAE+LHL+QS++SRQI  LET++G+ LF+R  + + LT+ G    
Sbjct: 15  LLAFEAAARHTSISRAAEELHLTQSAVSRQIRQLETQLGMALFHRVRQRVVLTDAGRVYA 74

Query: 68  RVTSEVYHKLE-TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                V  +L   TQ  +  S    +G L +A    LG   L   L +F   YP + + +
Sbjct: 75  ADVRAVLQQLSGATQKTMTWS--DGAGLLNLAVLPTLGTRWLIPRLGDFAAHYPSVTVNM 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++  D S+   D AI    P  + ++ +       MH    P      R    I ++
Sbjct: 133 AARSEPFDFSLVPLDAAIHFGAPHWAGAVCE-----YLMHEQVVPMCSPGYRAQHGITQV 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
              + +       +  +  +WL  V    G   +   +   +  I Q  V G G ALLP 
Sbjct: 188 QDLSTVVLLQQTTRPTQWADWLGQVGAD-GVYALRGPRFEQFAMIAQAAVAGLGAALLPR 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++V+    +  LV +    +T +   Y  YPE+      ++ FR++I 
Sbjct: 247 FLVETEIASGALVELFPQALTSTDAYYLVYPESRAQAPLVRVFRDWIL 294


>gi|84385541|ref|ZP_00988572.1| putative transcriptional regulator protein [Vibrio splendidus
           12B01]
 gi|84379521|gb|EAP96373.1| putative transcriptional regulator protein [Vibrio splendidus
           12B01]
          Length = 292

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 138/287 (48%), Gaps = 23/287 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  V   GSFT AA  L L ++++SR+I+ LE  +GI+LF+R  R L+LT+ G   +
Sbjct: 6   LKLFTTVVELGSFTAAANALDLPRANVSRRINDLEKSLGIQLFFRTTRSLSLTKSGELYY 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +        L+         S    G+++I    +   +++Q  L +F  +YP +++ + 
Sbjct: 66  KELLNALSALDKANHVASNLSEVAHGQIKIGLLPETS-DIMQSTLFKFQDMYPKVELDIR 124

Query: 128 -LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N  +D+     D A+     +  ++++ RK++ +     A+P +L+   +P +++EL
Sbjct: 125 NISNAFVDMYRQGLDLAMH-GGTLSDANVVARKVMVLQRIFVASPEFLEKQGKPSNLREL 183

Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGI 241
             +  + F    GD+      D  W         EP +    V+  +  ++  V+   GI
Sbjct: 184 SNYPFVCFRWPSGDI------DKQWDIKDHTIKVEPSV----VSDSIGFVKGGVIRHRGI 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE--ALKNTGKL 283
           ALLP+ +V+    +  L+ +  D        +  YP+  AL ++ +L
Sbjct: 234 ALLPELLVRQQLKDGTLINLFPDENLQEEEAWLLYPQRKALSHSAQL 280


>gi|325524862|gb|EGD02811.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 279

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 105/240 (43%), Gaps = 13/240 (5%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
           + S +++ LE +V  +LF R  R L LT++G        +    L+     LQE      
Sbjct: 1   AASARLAKLEAKVATRLFERSTRQLRLTDEGRLYLNCCRQALQALDDADAMLQEGRNVVG 60

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           GK+R+++T D G+N L   L EF  L+PD+   L   +   ++  D  D AIR   P   
Sbjct: 61  GKVRLSSTSDFGRNQLLDWLDEFTTLHPDVTFSLTASDSASNLWQDEIDLAIRFAAP-PD 119

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG-DLIPKCMEDFN-WLAT 210
            +LI R+L        AAP YL+   +P      D H+L  F  ++I       N W  T
Sbjct: 120 GALIARRLAANRRVLCAAPSYLERHGQP-----ADPHDLARFACNVITIASGPMNTWRFT 174

Query: 211 VDRPIGE---PRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF 267
               +     P  +  + N      ++ + G GIAL   + + D+    R+   V+ P +
Sbjct: 175 RGDEVQTYTVPVSTAFETNDGGLTREWTLRGHGIALKSLWDIADDVRAGRLR--VLLPEW 232


>gi|218463115|ref|ZP_03503206.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Kim 5]
          Length = 295

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 124/288 (43%), Gaps = 17/288 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VAR  SF  A E+  ++ S++S  +  LE  +GI+L  R  R ++LTE G  L
Sbjct: 8   ELAAFAAVARHKSFRKAGEERGVTASAVSHAVLNLEERIGIRLLNRTTRSVSLTEAGELL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                  + ++      L      P GK+RI     +G  ++   +   L   P++Q+++
Sbjct: 68  ISHLDPAFGEMAAALDALNRYRDTPFGKVRINVPNSIGPIVIGRIIAPLLQRNPNLQLEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +DI  +  D  IR  + +    +  R    I +    +P Y +   +P +  EL
Sbjct: 128 NATDRLVDIVEEGFDAGIRFGERVTEGMIALRMKPRIRLVVVGSPAYFETRPKPATPHEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +H  I   ++ P     + W    D      +P G      L ++ +  +MQ  + G G
Sbjct: 188 KRHLCIQ--NMFPSGAR-YAWEFEKDGQTVSFQPTGP-----LSLDDHELMMQAALDGVG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +A + +  V+       L+++++D   P   +Y  YP     +   +A
Sbjct: 240 LAYIWEPRVERAVAGGELIQVLDDWCQPEEPLYLYYPSRRHMSAGFRA 287


>gi|33601804|ref|NP_889364.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33576241|emb|CAE33320.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 301

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 129/301 (42%), Gaps = 18/301 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F        F  A   L + +S +SR+I+ LE  +G++L  R  R  ++T+ G
Sbjct: 3   DLNDLYYFVQTVDHRGFAPAGRALGMPKSKLSRRIAVLEERLGVRLIQRSTRHFSVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  Q  +  + V+P G +R++  + L    +   L EF+L YP + 
Sbjct: 63  QTYYEHCKAMLVEAEAAQEAIDAAQVEPRGVVRLSCPVALLHTHVGAMLGEFMLRYPRVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P+++S L+ R          A+P  L     P  
Sbjct: 123 LHLDASNRRVDVLGEGVDVAIRVRPPPLENSDLVMRPFADRGQCLVASPALLARHGAPAL 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLG 238
             +L     +  G  +P   +  +WL T   P G     P    +     L++    V G
Sbjct: 183 PADLAAWPSLALG--LPN--QPHSWLLT--GPQGAQATVPLAPRMVTTDMLALRSAAVAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKA 294
            G+  LP  +V+    +  LVR++ +       ++  +P      G L + R  + FL  
Sbjct: 237 VGVVQLPSMMVRGQLADGTLVRLLPEWAPCRELIHAVFP---SRRGLLSSVRTLVDFLAE 293

Query: 295 R 295
           R
Sbjct: 294 R 294


>gi|295699302|ref|YP_003607195.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438515|gb|ADG17684.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 285

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 6/127 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD D LR F  V  +GSFT AA  +H SQ+++S QI  LET +G  LF R+ R L+LT  
Sbjct: 5   FDVDLLRSFVAVVEAGSFTKAAASVHRSQAAVSMQIKRLETMLGTTLFARNTRNLSLTRP 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKP--SGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           G+ L     E   +    Q E   + V+P  +G++ +    D   +LL   L+ F  LYP
Sbjct: 65  GNTLL----EYARRALALQEEAWSAIVRPEVTGRVVLGAPDDYVSSLLSPVLRRFATLYP 120

Query: 121 DIQIQLI 127
            ++I+++
Sbjct: 121 RVEIEIV 127


>gi|187918836|ref|YP_001887867.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717274|gb|ACD18497.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 294

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 85/169 (50%), Gaps = 1/169 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  F  VA  G F  A+  L   ++++SR+++ LE  +G++L  R +R L LTE+
Sbjct: 1   MDLTSLADFNAVALHGGFGPASRALDRPKATLSRRVAELEETLGVRLIERGSRTLRLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  LH  T  +  +++     +   +  P G+LRI+  +     +L      F L YP +
Sbjct: 61  GLALHERTRGLMAEIQEAGEAVASRAPVPRGRLRISAPVVFAHVVLVRIATRFALAYPQV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP 171
           +++++ +++ +D   D  D  IR+  P     L+ R+++   +   AAP
Sbjct: 121 ELEVVAEDRVVDPVEDGYDLVIRI-NPAPDQQLVGRRILGDELLLVAAP 168


>gi|90413886|ref|ZP_01221872.1| D-serine deaminase activator [Photobacterium profundum 3TCK]
 gi|90325070|gb|EAS41580.1| D-serine deaminase activator [Photobacterium profundum 3TCK]
          Length = 311

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 6/177 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F V AR  SF+ AAE+L ++ S+IS +I+GLE E+GI+LF R  R ++LT 
Sbjct: 16  SFQLSKLHTFEVAARHSSFSLAAEELSMTPSAISHRINGLEDELGIQLFKRSHRKISLTT 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +++    +  + L     E++   V  SG L I +     Q  L   + +F  L+P 
Sbjct: 76  EGKRIYLSLKQSLNTLNQEIFEVRNGEV--SGTLTIYSRPSFAQCWLVPRIYKFKELHPA 133

Query: 122 IQIQLILDNKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
           I+++++  N++I+      D AI    +  K +    ++   +V +    YA  H L
Sbjct: 134 IELKILTGNENINFCGYGIDIAIYFDDKTPKKLWYQEIMSETIVPVCTPNYAKKHDL 190


>gi|56962992|ref|YP_174719.1| LysR family transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56909231|dbj|BAD63758.1| LysR family transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 293

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 125/276 (45%), Gaps = 25/276 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + +  R+FY  A+  +F+ AA  L ++Q S+S  I  LET++G+ LF RH++G+ LT +G
Sbjct: 3   NLEHYRIFYTTAKEQNFSKAASSLFITQPSVSHAIKQLETQLGVSLFIRHSKGVFLTTEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L+    + +  +ET +  LQ      SG + IA++  + ++ L   +  FL  +P + 
Sbjct: 63  NVLYSYIKQAFAHIETGERHLQSLKALESGSITIASSDSICKHYLLPRVPSFLKRWPKLD 122

Query: 124 IQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
           I+            L+   IDI +        +  PI    +      +      A+P Y
Sbjct: 123 IKFQHGSTPDIMKKLEQGRIDIGI--------VHLPINEKDVEITPFTSTTCLFCASPTY 174

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
                   S+ EL ++ L++F           ++L  + +  G+     L+V S   +++
Sbjct: 175 KTLHNGTHSLTELTRYPLVSFS----AGSSTRSFLERLFQQQGQTFSPELEVGSIELLIE 230

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPS 266
              LG GI  +   ++K   +   LV I  D+  P+
Sbjct: 231 CAKLGMGIGFVAKELIKKELEQGELVEIPVDIAIPT 266


>gi|319791549|ref|YP_004153189.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594012|gb|ADU35078.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 330

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 122/274 (44%), Gaps = 20/274 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A  GS   A+  L++S  + S+ ++ LE  +  +LF+R  R ++LT+ G    R+
Sbjct: 11  TFIKAAELGSLRKASHALNISPQAASKALAQLEEHLDARLFHRTTRVMSLTDAG---QRL 67

Query: 70  TSEVYHKLETTQIELQESSVKP---SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +V   L   Q  LQ +       +G LRIA      Q +L   ++EF  LYP IQ  +
Sbjct: 68  LEDVQPALLGMQRALQNARTAKDEFTGPLRIAGPRTTFQPILWRLVEEFCELYPGIQPDV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +LD++  +   D  D   RL  P     +I RKL  + M    AP Y +    P S+  L
Sbjct: 128 LLDDRVGNWVEDRVDVGFRL-GPSPHEGVIARKLFPLQMVICGAPAYFQRHGVPDSLPAL 186

Query: 187 DKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG--S 239
             H    F     G + P  +   + +A  D+P+     S  +V    +++   VLG  +
Sbjct: 187 ASHRCSAFRHPGTGKVAPWHVRLGDQVA--DQPVVPAICSNDEVFELQAVLAGKVLGQLA 244

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           G    P YI      LV I+ D + P F  YF Y
Sbjct: 245 GATAAP-YIRSG--QLVPILADHM-PDFASYFVY 274


>gi|237507737|ref|ZP_04520452.1| putative choline sulfate-utilization transcription factor
           [Burkholderia pseudomallei MSHR346]
 gi|234999942|gb|EEP49366.1| putative choline sulfate-utilization transcription factor
           [Burkholderia pseudomallei MSHR346]
          Length = 339

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 53  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGTRLF 112

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G   + T        L   L +     P + ++++
Sbjct: 113 AAVRQSLDALRAATADIR--SRRANGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 170

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
             ++DID   ++AD AI           S+ L Q  +  +   A+   H          R
Sbjct: 171 T-SQDIDPQREHADVAILFGAGDWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLLR 229

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 230 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 278

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 279 NQGVALGWAPLV-DTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 335


>gi|195970145|ref|NP_386710.2| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307307827|ref|ZP_07587556.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|187904204|emb|CAC47183.2| Transcription regulator LysR family [Sinorhizobium meliloti 1021]
 gi|306901693|gb|EFN32295.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 302

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 130/293 (44%), Gaps = 15/293 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V R G F  AA    +S S+IS+ IS LE  +GI+L  R  R +  TE G +
Sbjct: 7   DSLEIFEDVVRCGGFRAAALGRGVSSSAISQSISVLEEALGIRLLNRTTRSVAPTEAGEQ 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L        +++ T   +L +   +PSG +RI        ++L     EF+ +YPD+ ++
Sbjct: 67  LLERLRPALYEIRTAVDDLNQLRERPSGTVRINAPGPAADHVLCPLTFEFMKIYPDVNVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ D   IDI     D  +R    +    +       +     A+P YL+    P S ++
Sbjct: 127 IVSDAAIIDIVEQGFDAGVRFGNQLAQDMIAMPLGPALRYAIVASPDYLRKRGRPHSPRD 186

Query: 186 LDKHNLI----TFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +H+ I      G ++  K   D + +     P G      L ++S    +Q  + GSG
Sbjct: 187 LLQHDCIRRRFPGGTMVTWKFARDGDEVEIT--PKGR-----LTLSSAHQELQAALAGSG 239

Query: 241 IA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L  DY+  D     LV ++ D      + Y  YP     +  ++AF  +I
Sbjct: 240 IAHLFEDYVRDDVEQGRLVELLCDWKQKLPSWYLYYPSRRHTSAAMRAFLEYI 292


>gi|76818532|ref|YP_337271.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|226194926|ref|ZP_03790517.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254187379|ref|ZP_04893892.1| LysR family regulatory protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|76583005|gb|ABA52479.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|157935060|gb|EDO90730.1| LysR family regulatory protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|225932731|gb|EEH28727.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 339

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 53  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 112

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G   + T        L   L +     P + ++++
Sbjct: 113 AAVRQSLDALRAATADIR--SRRANGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 170

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
             ++DID   ++AD AI           S+ L Q  +  +   A+   H          R
Sbjct: 171 T-SQDIDPQREHADVAILFGAGDWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLLR 229

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 230 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 278

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 279 NQGVALGWAPLV-DTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 335


>gi|325925660|ref|ZP_08187041.1| Transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325543933|gb|EGD15335.1| Transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 300

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 13/199 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     +  F  VAR+G F  AA+   +S S+ S  I  +E  +G++LF R  R + LT
Sbjct: 1   MSGHLADMEAFVRVARAGGFREAAKSAGVSASTYSDAIKRMEASLGVRLFNRTTRSVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ L    +    +LE  +  +      P+G LR+   +   + +L   L  F+  YP
Sbjct: 61  DAGNALLARIAPALLELENAREVVSAFRDTPTGTLRLNVPVSAARLVLPRILPAFMAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-------HMHAYAAPHY 173
           DI ++++ +   +D+     D  IR          +Q+ +V I        +   AAP Y
Sbjct: 121 DITLEILTEESFVDVIAARCDAGIRY------GERLQQDMVAIPIGPRVQRIATAAAPGY 174

Query: 174 LKNCREPLSIQELDKHNLI 192
           L     P   +EL  H+ I
Sbjct: 175 LDRRGRPTHPRELVAHDCI 193


>gi|307726179|ref|YP_003909392.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586704|gb|ADN60101.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 304

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 132/280 (47%), Gaps = 17/280 (6%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +L L+ +++S++++ +E+  G+ L  R  R + LT +G    +    +  +++     L 
Sbjct: 28  ELGLTAAAVSKRLTQMESRAGVALVNRTTRRMMLTPEGELYLQHARRILDEIDELAELLG 87

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
            +   P G LR+  T+  G++ +   +  F+  YP + +QL L      ++ D  D  IR
Sbjct: 88  SAKKSPKGLLRVNATLGFGRSHVGPAISRFVAKYPQVSVQLQLSVTPPPLTDDTFDVCIR 147

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
             +P   + ++ R+L        AAP Y+ +   P++  +L +HN I     I +  E +
Sbjct: 148 FGEP-PDTRVVARRLAGNRRLLCAAPSYIASHGMPMTPHDLTRHNCIG----IRQGDEAY 202

Query: 206 N-WLATVDRPIGEP----RI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLV 256
             W  T  +   +     RI   L  N     +++ + G GI L  ++ +K    + +LV
Sbjct: 203 GVWRLTSGKGASQKTEAVRIKGTLTTNDGEIAVKWALEGHGILLRAEWDIKQYLADGSLV 262

Query: 257 RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            ++    TP+  ++  Y +  + + +++AF +F+   ARD
Sbjct: 263 VVLPGYDTPNADIFAVYSQRHQMSNRIRAFVDFV---ARD 299


>gi|218661867|ref|ZP_03517797.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 178

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 2/142 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR+GS T AA +L L+QS++SRQ+S LE ++G++LF R  + + LT  G    
Sbjct: 16  LAAFEAVARTGSVTAAARELDLTQSAVSRQVSALEEQLGVELFLRERQTMRLTLAGDSYA 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E   ++ +  + L+ +     G L +A     G   L   L  FL   P + I L+
Sbjct: 76  REIREALRRISSASLNLRAN--PHGGTLNLAILPTFGTRWLAPRLGRFLTANPGVTINLV 133

Query: 128 LDNKDIDISMDYADCAIRLRKP 149
                 D  +D  D AI    P
Sbjct: 134 TRLSPFDFRLDSIDAAIHFGHP 155


>gi|163854618|ref|YP_001628915.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258346|emb|CAP40645.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 347

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 17/243 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V R  S T AA+ LH++QS++SRQI  LE  +G+ L  R  R ++ T +G++
Sbjct: 55  DLVRGFVAVGRRMSITAAAQDLHVTQSAVSRQIRALEAHLGVTLLSRGFRSVSFTAEGAQ 114

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R+      +L   ++  Q  + +    + + TTI +    L   L EF   +P + ++
Sbjct: 115 LFRMADPWLTQL--GELAGQWRAPERRTPVTVTTTIGVASLWLLPRLGEFQAAHPAVDVR 172

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  DN+ +DI  D  D AIR   P +++      L    +   A P         L I  
Sbjct: 173 VAADNRVLDIDRDGVDIAIRY-SPREAAPDGALWLFGEAVVPVAHPS--------LGIAR 223

Query: 186 LDKHN-----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LD        L+ F D     ++   WL   +     P+   L+ N Y  ++   + G G
Sbjct: 224 LDAGTLPGLVLLEFDDPTRPWLQWAEWLQVCELGNARPK-GMLRFNQYDQVVHAALAGHG 282

Query: 241 IAL 243
           +AL
Sbjct: 283 VAL 285


>gi|33601920|ref|NP_889480.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33576357|emb|CAE33436.1| probable LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 300

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 128/279 (45%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AAEQL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLDELQAFVAVVDTGSITAAAEQLGLTVSAASRTLGRLEEKLQTTLVRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+   +    +   ++  + ++    ++P+G+LR+        ++L   +  F   YP
Sbjct: 61  EEGAAFLQHARAILASVDEAEEQMAARRMRPAGRLRVDAATPFMLHVLVPLIAGFHARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  +   +D+     D A R+   ++ S+L  R + T  +   A+P YL+    P
Sbjct: 121 EVELELNSNEGIVDLIEKRTDVAFRI-GVLKDSTLHARAVGTSRLRVLASPAYLERRGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               +L +H L+ F    P+ + D  W L   D  +   R   +  +S  ++    + G 
Sbjct: 180 TRTAQLAQHALLGFTQ--PETLND--WPLRDADGAVLRIR-PTIASSSGETLRHMALAGL 234

Query: 240 GIALLPDYIVKDNPN-------LVRIMEDVITPSFTVYF 271
           GI  L D++  ++           R   DV  P   VY+
Sbjct: 235 GIVCLSDFMTGEDRRAGALVQLFARQTLDVRQPVNAVYY 273


>gi|114049104|ref|YP_739654.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113890546|gb|ABI44597.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 305

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VA  GS + AA ++ LS +S S  I  LE ++   LF R  R L LT QG +
Sbjct: 4   NDLALFVRVADCGSISAAAAEMELSAASASAAIKRLEKQLDTSLFVRTTRSLRLTAQGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      L   +  +     K SG L ++ + D G+NL    L +FLL +P +Q++
Sbjct: 64  YLIHCRRALSDLALGEQAIASDKGKISGTLSLSVSSDFGRNLFIPWLDDFLLDFPQLQVR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +       D  D A+R  KP Q S+ +   + ++     A+P YL    +P ++++
Sbjct: 124 LHLGDNISSFYHDKIDVAVRYGKP-QDSNQVAFPICSVDRVLCASPEYLAKFGKPETLEQ 182

Query: 186 LDKHNLITF 194
           L +HN + +
Sbjct: 183 LTQHNCLFY 191


>gi|295090118|emb|CBK76225.1| Transcriptional regulator [Clostridium cf. saccharolyticum K10]
          Length = 296

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 68/126 (53%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  ++D  R+FY VA+  SFT AA  L  +Q +I+R ++ LE ++G +LF R  RG++LT
Sbjct: 1   MEINYDYYRIFYYVAKYKSFTQAANILMNNQPNITRSMNNLENQLGCRLFIRSNRGVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L    S  Y +L+  + EL        G + I  +      LL   L EF  L+P
Sbjct: 61  PEGDRLFHHVSIAYKQLQMAESELGRGKSIQDGTVSIGASETALHELLLSRLSEFRTLFP 120

Query: 121 DIQIQL 126
            + I++
Sbjct: 121 GVHIRI 126


>gi|170749729|ref|YP_001755989.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656251|gb|ACB25306.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 296

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 125/296 (42%), Gaps = 14/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R+F  VA + SF   A  LH+S  +++R ++ LE  +G +L  R  R + LTE GS
Sbjct: 4   WQAMRIFAKVAETASFAQTARLLHMSPPAVTRAVAALEETIGARLLIRTTRSVKLTEAGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +   +   +     S+  PSG L +  ++  G+  +   + ++L  YP +  
Sbjct: 64  RYYEDCRRILADIAEAESAAAGSNATPSGTLAVTASVLFGRMHVLPIVTDYLDTYPTMAA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +  ++ + I  +  D AIR+   +  S     ++ ++      AP Y      P +  
Sbjct: 124 RTLFVDRPVSIVEEGIDVAIRIGH-LTDSGFTAARVGSVRHVICGAPDYFVRHGVPTTPA 182

Query: 185 ELDKHNL-ITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L +H + ++ G           W     +R +  P    LQ N+    +     G G+A
Sbjct: 183 DLKRHRIAVSTG-----AFASPEWRFGRNERVVIHP---TLQGNTNEVSIGAARSGWGLA 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + +Y +     +  L  ++ +       V+  YPE      K++ F +    + R
Sbjct: 235 RVLNYQIGPDLRDGRLQIVLAEYEEAPLPVHVLYPEGRHAPAKVRTFVDLAVSRLR 290


>gi|149908122|ref|ZP_01896786.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149808664|gb|EDM68597.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 303

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 119/249 (47%), Gaps = 14/249 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V + GSFT AA++++++ S++S+ I+ LE  + +KLF R  R L +TE G K++
Sbjct: 14  LASFTLVVQEGSFTAAAKKINVTPSALSKTITRLEQALSVKLFERTTRKLIITEAGKKIY 73

Query: 68  R----VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                + +     +E + IE      KP+G + +A        +LQ  +  FL  YP +Q
Sbjct: 74  DQCVPMVNAAKQVVEISSIE----HTKPAGSITVAAPEAFLNVVLQPFVVPFLQQYPQVQ 129

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++L   +  IDI     D A  L  KP    +L+ +++   ++   A+P YLK    P  
Sbjct: 130 LKLRAIDGPIDIFEHGIDIAFMLTDKP--DENLVLKEIAKTYLVLCASPDYLKEKGIPSH 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ +   +     + DF      D            VN     +   + G GI 
Sbjct: 188 PEQLKQHDCLYLAENETDHIWDF---VKGDESHTVTVSGRYAVNHSQMRLNGVINGLGIG 244

Query: 243 LLPDYIVKD 251
           + PD++V++
Sbjct: 245 IFPDFVVQE 253


>gi|33597256|ref|NP_884899.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33573683|emb|CAE37973.1| LysR-family transcriptional regulator [Bordetella parapertussis]
          Length = 301

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 127/299 (42%), Gaps = 14/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F        F  A   L + +S +SR+I+ LE  +G++L  R  R  ++T+ G
Sbjct: 3   DLNDLYYFVQTVDHRGFAPAGRALGMPKSKLSRRIAVLEERLGVRLIQRSTRHFSVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  Q  +  + V+P G +R++  + L    +   L EF+L YP + 
Sbjct: 63  QTYYEHCKAMLVEAEAAQEAIDAAQVEPRGVVRLSCPVALLHTHVGAMLGEFMLRYPRVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P+++S L+ R          A+P  L     P  
Sbjct: 123 LHLDASNRRVDVLGEGVDVAIRVRPPPLENSDLVMRPFADRGQCLVASPALLARHGAPAL 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +L     +  G    +  +  +WL T   D     P    +     L++    V G G
Sbjct: 183 PADLAAWPSLALG----QPNQPHSWLLTGPQDAQATVPLAPRMVTTDMLALRSAAVAGVG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKAR 295
           +  LP  +V+    +  LVR++ +       ++  +P      G L + R  + FL  R
Sbjct: 239 VVQLPSMMVRGQLADGTLVRLLPEWAPCRELIHAVFP---SRRGLLSSVRTLVDFLAER 294


>gi|126444309|ref|YP_001061839.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126223800|gb|ABN87305.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 301

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 15  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G   + T        L   L +     P + ++ +
Sbjct: 75  AAVRQSLDALRAATADIR--SRRANGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVR-V 131

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
           + ++DID   ++AD AI           S+ L Q  +  +   A+   H          R
Sbjct: 132 VTSQDIDPQREHADVAILFGAGDWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLLR 191

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 192 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 240

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 241 NQGVALGWAPLV-DTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 297


>gi|311105738|ref|YP_003978591.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760427|gb|ADP15876.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           71 [Achromobacter xylosoxidans A8]
          Length = 304

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 110/250 (44%), Gaps = 33/250 (13%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF   AR GSF  AA++L ++ +++S QI  LE + G+ LF RH R ++LTE G++L+
Sbjct: 13  LRVFEAAARLGSFKAAAQELAVTPTAVSHQIRALEAQTGLALFDRHVRKVSLTETGAQLY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V  + +   E T   L +   +   ++ I+ T       L   + +F   +P I +QL 
Sbjct: 73  PVLRDGFDAFEATLARLTQQRAR--TQVTISATNAFTVKWLVPRMADFRSRHPGIDLQLQ 130

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +  +D+     D AIR  R P     L+ + L T      A P         L +   
Sbjct: 131 ASDDVVDLRSAAVDIAIRYGRGPY--PGLVAQPLFTDRFAPVANPR--------LGVSST 180

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGE----------PRISC-LQVNSYLSIMQY 234
           D        DL    +  FNW  +  D P  E          PR +  L+ +     +Q 
Sbjct: 181 D--------DLARVPLIRFNWKWSHPDNPTWERWFDVAQRSLPRQAGQLRFSDEGHAIQA 232

Query: 235 CVLGSGIALL 244
            V G G+AL+
Sbjct: 233 AVAGHGVALV 242


>gi|293603597|ref|ZP_06686018.1| transcriptional regulator [Achromobacter piechaudii ATCC 43553]
 gi|292818033|gb|EFF77093.1| transcriptional regulator [Achromobacter piechaudii ATCC 43553]
          Length = 325

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 144/320 (45%), Gaps = 47/320 (14%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VA+  SF+ AA  L +  S++SR+I+ LE  +G++L  R+ R L LTE G+ 
Sbjct: 9   NDIALFVEVAKRKSFSMAARALDMPTSTLSRRINELERAIGLRLINRNTRRLDLTEAGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R    +  +      +L   S  PSG LR++    L   LL   +K+F   YPD++ +
Sbjct: 69  YMRRCQGLIDEARLAHEQLLSLSGGPSGNLRVSMPYSLAIWLLPETIKDFTDRYPDVECE 128

Query: 126 LILD--------NKDIDISMDY---ADCAIRLRKPIQSS------------SLIQRKLVT 162
             L             D+ + +   AD ++   + I  +              + ++LV+
Sbjct: 129 FDLSMMTASDAQGTPFDVVLRFGRNADFSVTPTEAINGNGDSNGGRSARPGGAVVQELVS 188

Query: 163 IHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRIS 221
           +  H YA+  YL+   EP +  +L +H  +         ++D +   T+ +  I E    
Sbjct: 189 LDNHLYASDRYLQRHGEPKTPADLTQHQCLR------TTIDDAHSHWTLHKGAISE---- 238

Query: 222 CLQVNSYLSIMQYCVLGS------GIALLP-----DYIVKDNPNLVRIMEDVITPSFTVY 270
            + V+ +L+     + G+       I  +P     D I+K N +L R++        +++
Sbjct: 239 VVPVSGHLAANNMSIAGTLAGLDLAITRMPNCQALDPIIKRN-SLRRVLPGWSVDPISIF 297

Query: 271 FCYPEALKNTGKLKAFRNFI 290
             YP +++   K +AF +FI
Sbjct: 298 VVYPSSIQ-PAKTRAFMDFI 316


>gi|161520358|ref|YP_001583785.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353465|ref|YP_001949092.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221209666|ref|ZP_03582647.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160344408|gb|ABX17493.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337487|dbj|BAG46556.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221170354|gb|EEE02820.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 291

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FD D+LR F  VA +GS T AA  LHLSQS++S Q+  LE+  G+ LF R  RG+  T 
Sbjct: 3   GFDLDQLRTFAAVADAGSLTAAAPLLHLSQSTVSEQVRKLESRAGVPLFVRSKRGVEPTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L      +    E    EL+  ++K  G+LR+A T     + + G L      YP 
Sbjct: 63  AGARLLHHARRIVALNEAAFDELRGQAIK--GELRVAITDYYRTHEVAGMLARLRECYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRL 146
           + +  +   K  DI   YA   I L
Sbjct: 121 LSLH-VSAMKSADIEAAYAKGQIDL 144


>gi|187923083|ref|YP_001894725.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714277|gb|ACD15501.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 305

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 1/191 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF      GSF  AA +  LS +   + +S +E E+  +L  R  R L+LT+ G   +
Sbjct: 7   LGVFVAAVEEGSFAAAARRFGLSAAMAGKHVSAIEAELNARLLQRTTRRLSLTDAGQTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +    E  +S     G LR+A  +  G   L   +  +L  +P + ++++
Sbjct: 67  ERCKRILEAFDEANREAGDSQGTAHGVLRVAAPVTFGAMHLGEVVARYLEDHPHVNVEVL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+     D AIR+ + +    L+ R+L    M   A+P YL+    P   ++L 
Sbjct: 127 LGDRYVDLMDAGVDVAIRIGR-LTDPRLVMRRLAPCRMVVCASPAYLERHGAPRKPEDLR 185

Query: 188 KHNLITFGDLI 198
               +TF + +
Sbjct: 186 LAQRLTFSEAV 196


>gi|70731877|ref|YP_261619.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346176|gb|AAY93782.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 292

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 106/253 (41%), Gaps = 22/253 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+  L +   + R GS   AA  L +  S++ R +  LE  +G +LF +   G   T  
Sbjct: 10  LDYPDLSLILALVRGGSLARAAALLKVDVSTVFRAVRRLEAGLGQQLFDKSRAGYLPTSL 69

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              L +        LE  +I +       SG +R+  T  + Q LL   L +F+  YP +
Sbjct: 70  AQALAQQAEHAEQALEAARIGVARGGEVVSGTVRLTCTDSVLQGLLLPALAQFMANYPAL 129

Query: 123 QIQLILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+L   N   +++   AD A+RL  R P     L+ R L  +     A+P Y    R+ 
Sbjct: 130 VIELCTSNDFANLNRRDADIAVRLTARPP---EHLVGRCLGAVSYRVCASPAY----RQR 182

Query: 181 LSIQELDKHNLITFGDLIPK----CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +   +L +   I   D +P           W      P  +P   C   NS LS+ +   
Sbjct: 183 VDCTDLSRLAWIAPDDFLPDHPTVVWRRQQW------PGVQPSYRC---NSMLSVTELVR 233

Query: 237 LGSGIALLPDYIV 249
            G G+A LPD++V
Sbjct: 234 AGLGVAALPDFLV 246


>gi|218891158|ref|YP_002440024.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254241108|ref|ZP_04934430.1| hypothetical protein PA2G_01795 [Pseudomonas aeruginosa 2192]
 gi|126194486|gb|EAZ58549.1| hypothetical protein PA2G_01795 [Pseudomonas aeruginosa 2192]
 gi|218771383|emb|CAW27150.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 309

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 1/192 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +
Sbjct: 10  DEVATLLALAEHGSFAAAGRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++
Sbjct: 70  LASRFRQAVDLLDEAEHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                + +DI  +  D AIR+ + +  S L+ R+L        AAP YL+    P    +
Sbjct: 130 TDYSERFVDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLERHGVPRIPAD 188

Query: 186 LDKHNLITFGDL 197
           L  HN + F  L
Sbjct: 189 LAAHNCLGFSGL 200


>gi|152979747|ref|YP_001345376.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150841470|gb|ABR75441.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 291

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 2/192 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LR F +V    SFT A E+L +S S++S  +S LE  + I+L  R  R ++ T +G
Sbjct: 3   NLNDLRTFVLVVEHKSFTKAGEKLGISASAVSHCVSNLENRLNIRLLNRTTRSVSPTPEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYPDI 122
             L    S     ++ +  +L+E+   P G +RI A+ + +   +L   L   L  +P I
Sbjct: 63  LSLLNDISPYLQAIDLSVQKLEENQDTPMGTVRINASQVAIEMAVLP-KLAPILSRFPHI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI+L  +N+ +DI  +  D  +R+   +    +  +    +     A+P YL +   P  
Sbjct: 122 QIELHSENRFVDIVGEGFDMGVRIGDDVAKDMVAVKVSPPLTTAIVASPRYLADKPIPRH 181

Query: 183 IQELDKHNLITF 194
           I++LD H LI  
Sbjct: 182 IKDLDNHRLIAL 193


>gi|300692783|ref|YP_003753778.1| transcriptional regulator, lysR-family [Ralstonia solanacearum
           PSI07]
 gi|299079843|emb|CBJ52520.1| transcriptional regulator, LysR-family [Ralstonia solanacearum
           PSI07]
          Length = 310

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 124/283 (43%), Gaps = 6/283 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  VA + SF  AA QL ++ S ++ ++  LE  +   LF+R  R + L+E G   
Sbjct: 6   SIEAFVRVAETHSFAEAARQLGVTNSVVTHRVQQLERYIEAPLFHRSTRHVRLSEVGETY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++  +     L     +++     P+GKLRI        +     L  F   YPDIQ+ +
Sbjct: 66  YKQCAHAVAMLSDLTDQMRGLRATPAGKLRIRMLPGYALHHFARPLARFSAQYPDIQLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D+  +D   +  D   ++  PI + SLI+++L  +     A P Y++    P    +L
Sbjct: 126 VVDDSVVDPIAEGFDVVFQIFPPI-NDSLIEKRLFILRRMFCATPDYVEEYGVPRQPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H L  +     +    F+    V   +  P    ++ NS   +  Y + G+GIA LP 
Sbjct: 185 LRHALALYSGYPTRRHWVFSRNGEVAAELDLP--EQVRSNSVHLLRDYALTGAGIACLPT 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +V D+     LV ++ D     F     YP   +   K+ A 
Sbjct: 243 LVVSDDLLAGRLVPVLPDYDLAPFHFAAVYPATQRQAVKVCAL 285


>gi|167563887|ref|ZP_02356803.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 326

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 29/302 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  ++ +  +P G LR+A +  L    +   +  +   YP +++QL 
Sbjct: 67  DGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRVTPLVDSYRRQYPKVRVQLT 126

Query: 128 LDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L    +D I   Y    +   +   + +LI   L+   +   AAP Y++    P    +L
Sbjct: 127 LTEGPLDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAPHRPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIA 242
            +H  I     +P       W   VD P     +  LQ    VNS   +    + G+GI+
Sbjct: 187 VRHACIA----LPADQHSSTW-RFVD-PDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS 240

Query: 243 LLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP+  + D   +  LVRI+ D  +  P   +   YP             N  FL AR  
Sbjct: 241 VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYP-------------NRQFLPARTR 287

Query: 298 KF 299
            F
Sbjct: 288 SF 289


>gi|161521131|ref|YP_001584558.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352691|ref|YP_001948318.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345181|gb|ABX18266.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336713|dbj|BAG45782.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 314

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 122/278 (43%), Gaps = 27/278 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR G F  AAE+L+++ ++IS QI  LE  +G+KLF R  R + LT+ G+ L 
Sbjct: 10  LRAFEAAARRGGFKAAAEELNVTPTAISHQIRQLEDWLGVKLFERRTRSVRLTDGGTALF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLR-IATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +   E     ++ +     GK+  + +T+      L      F   YPD  ++L
Sbjct: 70  PALRDGFDSFERA---IETTRNLDGGKVATLTSTVAFTAKCLAARAGGFRAAYPDWTLRL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI--- 183
              N  +D+    AD +IR   P   + L+   L           H+   CR  L+I   
Sbjct: 127 DATNAVVDLDRS-ADASIRY-GPGYYAGLVSELLFK--------DHFAPVCRPHLAIATA 176

Query: 184 QELDKHNLITF--GDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           Q+L +  LI F  G  +   P+ +   +WL        +P  + L+ N  +  MQ  + G
Sbjct: 177 QDLQRATLIHFDWGAAVRDDPRAITWAHWLGAAGMSGIDPN-AGLRFNDEIHAMQATLAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            G+ L+   +V D   N  LV+   D+   SF     Y
Sbjct: 236 QGVGLISLTLVADELANGTLVQPF-DLALESFQYDLVY 272


>gi|292487003|ref|YP_003529873.1| HTH-type transcriptional activator ampR [Erwinia amylovora
           CFBP1430]
 gi|292900612|ref|YP_003539981.1| LysR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|61196930|gb|AAX39439.1| AmpR [Erwinia amylovora]
 gi|291200460|emb|CBJ47589.1| LysR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291552420|emb|CBA19465.1| HTH-type transcriptional activator ampR [Erwinia amylovora
           CFBP1430]
          Length = 297

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 29/293 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT A+ +L+++ ++IS+Q+  LE  +  +LF R +RGL LT +G  
Sbjct: 8   NSLRAFEAAARLLSFTKASRELNVTHAAISQQVKALEQHLKCQLFIRISRGLMLTAEGES 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  + +E + ++  T     +  ++   K+ +  T  +G   L  +L++F  L+P I + 
Sbjct: 68  LLPILNESFDRIANTLDRFADGQMREKMKIGVVGTFAIG--WLLAHLQDFRRLHPHIDLL 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS--- 182
           L   N  +D   +  D AIR        +                 H+L  C  PLS   
Sbjct: 126 LSTHNNHVDSLAEGLDYAIRYGNGAWHGT---------------ESHFL--CDAPLSPLC 168

Query: 183 -----IQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                 Q     NL +F  L     ++++ W +     +  P    +  +S L++++   
Sbjct: 169 CPALGAQLHAPGNLHSFTLLRSYRRDEWSTWFSAAGERLPSPSQHIMMFDSSLTMLEAAQ 228

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G+GIAL P  +     N  RI++   + S ++   +   L++  +  A R+F
Sbjct: 229 AGAGIALAPPTMFSHLLNSGRIVQP-FSLSISLGGYWLTRLQSRTETAAMRDF 280


>gi|307728776|ref|YP_003906000.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583311|gb|ADN56709.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 300

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 136/292 (46%), Gaps = 18/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F +VAR  +   AA +L ++  ++S++++ LE  +G++L  R  R L+LT +G    
Sbjct: 7   LNLFALVARHRNLAAAARELGVTPPAVSKRLAQLERRLGVRLINRTTRRLSLTPEGELYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  +L   +  + +S  +P+G LR+  +   G+  +   + EF+  YP  +I L 
Sbjct: 67  SNGSRILDELSELEHLVTQSRGEPTGLLRVNASFGFGRARIAPAVSEFVARYPATKILLH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ I +  +  D  IR  + +  + +  R L+       A+P Y+     P    +L 
Sbjct: 127 LTDRPISLQDEGFDLGIRFGE-VPDARINARLLLENRRMVCASPGYVARHGNPSVPHDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGI 241
           +H  I          E+ +   T     G+ R   ++V+  L+      ++Q+ + G GI
Sbjct: 186 RHACIVL-------RENESAYGTWHFSRGK-RTETVKVDGALASNDGSVVLQWALEGRGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +   + ++ +     LV ++ D   P   ++  Y E  + + KL+ F +F+
Sbjct: 238 VVRSQWEIEGHLARSELVPLLPDWTLPDANIHAIYLERNQLSVKLRTFVDFL 289


>gi|149911306|ref|ZP_01899927.1| LysR-family transcriptional regulator [Moritella sp. PE36]
 gi|149805621|gb|EDM65623.1| LysR-family transcriptional regulator [Moritella sp. PE36]
          Length = 301

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 1/191 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  LR+F +VA  GSF  AA+ L +  S++SR IS LE ++ ++L  R  R + LTE G
Sbjct: 5   DFTSLRIFSLVADKGSFIGAAKALQMPSSNVSRTISQLEAKLQVRLIERSTRHMRLTESG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L+  +  +   L   + E+  +  +  G LR+    ++G  LL  ++ +F L YP++ 
Sbjct: 65  ALLYSRSGALLDALAQIESEITSNKTQLKGPLRLCIPSEIGPKLLGDSIIDFALKYPEVS 124

Query: 124 IQLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I    +    + +  D     I  R  +  S  I +KL        AAP  +K   +P +
Sbjct: 125 INCTTNLAGFESLIEDIDIAIIITRGELPDSEYIAQKLGEYPCCIVAAPKVIKQWGKPSN 184

Query: 183 IQELDKHNLIT 193
           I +      IT
Sbjct: 185 ISDFSALPCIT 195


>gi|254243544|ref|ZP_04936866.1| hypothetical protein PA2G_04363 [Pseudomonas aeruginosa 2192]
 gi|126196922|gb|EAZ60985.1| hypothetical protein PA2G_04363 [Pseudomonas aeruginosa 2192]
          Length = 302

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 128/305 (41%), Gaps = 39/305 (12%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AAE+L L+QS+I RQI+ LE  +G++LF R  RG+ LTE G    R  
Sbjct: 14  FESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGVKLTEAGLTYSRRV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL---- 126
           +     +E   + +     +  G + +A     G   L   LK F  L+P++ + L    
Sbjct: 74  AVRLDAVERDTLAVM--GHQGGGAIELAVVPTFGTQWLLPRLKRFQRLHPEVTVNLTNRT 131

Query: 127 ---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +  + + D ++ + D           S  +   L+  +     +P  L   R  LS 
Sbjct: 132 RPFLFADTEFDAALYFGDA--------DWSGTVSHFLMRENPVPVCSPELLGG-RRTLSA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYCV 236
           ++      +    L+ +    + W          V   +  PR     +     + Q  +
Sbjct: 183 EQ------VAGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFSM-----LAQAAM 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+AL+P ++++D   +  L+  M+         Y   PE    +  L AFR+++  +
Sbjct: 232 HGMGVALIPPFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEE 291

Query: 294 ARDWK 298
           AR ++
Sbjct: 292 ARQYR 296


>gi|239503882|ref|ZP_04663192.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB900]
 gi|193078626|gb|ABO13668.2| putative transcription regulator protein [Acinetobacter baumannii
           ATCC 17978]
          Length = 324

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 129/269 (47%), Gaps = 22/269 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G 
Sbjct: 20  FDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLGQ 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +V  ++E  +  L +   +P G ++++    +    ++  L +FL  YP ++I
Sbjct: 80  EFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVEI 139

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R     
Sbjct: 140 SLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RTIKHY 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-------ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            EL     I+ G       +++ W         +VD P  +PRI     ++ L+ + Y V
Sbjct: 199 SELQDFPSISLG----TQKQNYIWHLCNIRNGESVDVPY-QPRIK----SNDLAGVYYAV 249

Query: 237 L-GSGIALLPDYIVKDN---PNLVRIMED 261
           + G GIA LP   V+       LV I+ D
Sbjct: 250 MDGLGIADLPFLTVESEIRKGTLVHILPD 278


>gi|227818727|ref|YP_002822698.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36958980|gb|AAQ87405.1| Transcriptional regulators, LysR family [Sinorhizobium fredii
           NGR234]
 gi|227337726|gb|ACP21945.1| putative transcriptional regulator LysR [Sinorhizobium fredii
           NGR234]
          Length = 308

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 67/123 (54%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LR F  VAR G+ T A+EQLHL+Q ++S+ +  L ++ G+ LF R ++GL LT QG
Sbjct: 6   DLKTLRAFVAVAREGNVTRASEQLHLTQPALSQHLKRLASDTGVTLFRRTSKGLELTHQG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L     +V+  L+      +    +  GKLRI T ID     L G LK  +   P I+
Sbjct: 66  ALLAAKAEQVFAALQDFGQTARHLGAQVRGKLRIGTIIDPEFTRLGGFLKALVDSGPGIE 125

Query: 124 IQL 126
            +L
Sbjct: 126 TEL 128


>gi|70731322|ref|YP_261063.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345621|gb|AAY93227.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 295

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 9/209 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    +L+ F+ VA  GSFT AAE+L+L+Q +IS Q+  LE   G+ LF+R+ R + LT
Sbjct: 1   MSVSHAQLKAFHAVAVHGSFTRAAERLYLTQPAISDQVRKLEERFGVLLFHRNKRSVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L  +T  ++      +  LQES    +G L +A  +D   ++L   +  F  LYP
Sbjct: 61  DLGERLLAITQRLFVVEAEAKELLQESRALQTGSLVLA--VDAPVHVLP-QIARFCELYP 117

Query: 121 DIQIQLILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            I +++   N D  +   +   AD A+ L + +    L+   L    M A+ + H+    
Sbjct: 118 GINVKIETGNTDESLLRLFNYQADLAL-LGRAVDDERLLSLTLRNDPMVAFVSRHHPWAG 176

Query: 178 REPLSIQELDKHNLI--TFGDLIPKCMED 204
           R+ + + +LD   L+    G +  + +E+
Sbjct: 177 RQSICLADLDDTPLVLREVGSVTRQTLEE 205


>gi|307729453|ref|YP_003906677.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583988|gb|ADN57386.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 300

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 137/292 (46%), Gaps = 18/292 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F +VAR  +   AA +L ++  ++S++++ LE  +G++L  R  R L+LT +G    
Sbjct: 7   LNLFALVARHRNLAAAARELGVTPPAVSKRLAQLERRLGVRLINRTTRRLSLTPEGELYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  +L   +  + +S  +P+G LR+  +   G+  +   + EF+  YP ++I L 
Sbjct: 67  SNGSRILDELSELEHLVTQSRGEPTGLLRVNASFGFGRARIAPAVSEFVARYPAMKILLH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ I +  +  D  IR  + +  + +  R L+       A+P Y+     P    +L 
Sbjct: 127 LTDRPISLQDEGFDLGIRFGE-VPDARINARLLLENRRVVCASPGYVARHGNPSVPHDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGI 241
           +H  I          E+ +   T     G+ R   ++V+  L+      ++Q+ + G GI
Sbjct: 186 RHACIVL-------RENESAYGTWHFSRGK-RTETVKVDGALASNDGSVVLQWALEGRGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +   + ++ +     LV ++ D   P   ++  Y E  + + KL+ F +F+
Sbjct: 238 VVRSQWEIEGHLARGELVTLLPDWALPDANIHAIYLERNQLSVKLRTFVDFL 289


>gi|170691249|ref|ZP_02882414.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143454|gb|EDT11617.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 295

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 128/285 (44%), Gaps = 8/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+  R    V + GS + AA  L ++Q +  R I  LE  + + LF R   GL  T+
Sbjct: 4   NIGWELYRTLLAVLQEGSLSGAARALGITQPTAGRHIEALERALKVSLFTRSQTGLQPTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +     + +   +  + +  G +R+A +  +G  +L   +      YP 
Sbjct: 64  IALALRPHAETMQSTAASLERAARSDAAQVQGAVRVAASEVVGAEVLPPIIAALRERYPQ 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+L N+  D+    AD A+R+ +P Q + L+ R++  I +  +A   YL     P 
Sbjct: 124 LVVELVLSNRVEDLLKREADVAVRMMRPKQ-TQLVARRIGNIELGLHARRDYLAKHGTPR 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           +   L +H +I + D     + D    A+   P G  R    ++ ++ L+ +     G+G
Sbjct: 183 NAAALWQHAIIGY-DRPSAFVRD----ASKAFP-GYSRAGLSIRTDNDLAQLALIRAGAG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           I +    + + + +LVR++  ++      +    E L+N+ + +A
Sbjct: 237 IGVCQVALARRDKSLVRVLPKLVALRLDTWVTMHEDLRNSPRCRA 281


>gi|221065919|ref|ZP_03542024.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710942|gb|EED66310.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 306

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 1/182 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++++ GS   AA+QL ++  ++S++++GLE  +G +L +R  R ++LT +G +  
Sbjct: 7   LAFFAMLSKEGSMRGAAQQLGVTGPAVSKRLAGLEARLGARLMHRTTRRMSLTPEGERYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L   +  +   +  P G +R+  +   G+  +   L  F   +P++++QL 
Sbjct: 67  VEGGRLLTELGALERAIGGVAAVPQGLIRVNASFGFGRKHIAPALGVFARRFPEVEVQLH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  ++  D  D  IRL   +  S    R L        A+  YLK   EP + QEL 
Sbjct: 127 LSDRPANLIEDNFDVVIRL-GDMPDSRWTARVLARNRRVLCASALYLKEAGEPSTPQELA 185

Query: 188 KH 189
           +H
Sbjct: 186 RH 187


>gi|330830782|ref|YP_004393734.1| carbapenem-hydrolyzing beta-lactamase transcriptional activator
           [Aeromonas veronii B565]
 gi|328805918|gb|AEB51117.1| Carbapenem-hydrolyzing beta-lactamase transcriptional activator
           [Aeromonas veronii B565]
          Length = 306

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 15/291 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F   AR  SFT AAE+L ++Q++IS QI  LE  +GIKLF R  R L LTE+G  
Sbjct: 9   NALKAFEAAARHLSFTRAAEELFVTQAAISHQIKALEEYLGIKLFRRKNRSLLLTEEGQG 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  +     +L   S K  G L ++         L   L +F   +PDI ++
Sbjct: 69  YFLDIKDIFASISEATDKLLARSAK--GALTVSLQPSFAIQWLVPRLVKFSERHPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   + D     D  D AI   +      L   KL T ++    +P  L   +   + Q+
Sbjct: 127 IKAVDLDEGSLTDDVDVAIYYGRG-NWPGLRSDKLHTEYLIPVCSPLLLTGPKPLRTPQD 185

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSGIAL 243
           L  H L     L      D+  W   +D  I  P ++   + S+ + ++Q  + G G+AL
Sbjct: 186 LTLHTL-----LHDTSRRDWKAWFRQLD--IDAPNVNQGPIFSHSTMVIQAAIHGQGVAL 238

Query: 244 LPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
               + +      R++   E V+      Y    E   + GK+ AFR+++ 
Sbjct: 239 GHSVLAQPEIEAGRLICPFEQVLVSKNAFYLVCQEQQSDQGKIVAFRDWML 289


>gi|312795950|ref|YP_004028872.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312167725|emb|CBW74728.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 328

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 24/298 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  + SFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE G +  
Sbjct: 22  MRVFVRVVEAKSFTAAAQQMNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERYL 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++  + E  ++  +P+G+LRI  T   GQ  +   +  +   YP + + L 
Sbjct: 82  LRCEQILAYVDQAEAEAADAHARPAGRLRIHATTSFGQYYVVPAVTRYQERYPAVSVDLT 141

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L     D+  +  D  +++    +  S L+ ++L   +    A+P YL+    P S+ +L
Sbjct: 142 LSQHVPDLLDEGYDVTLQVSANELPDSGLVSQRLGDSYSVLCASPAYLEKRGTPRSVSDL 201

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVN--SYLSIMQYCVLGSG 240
             H  +    ++       +W    D P G    E      QVN    L++     +G G
Sbjct: 202 AGHTCLR---IVTSIFPGDHW--RFDGPDGIETIELPAPTFQVNVSDALAVALREGMGIG 256

Query: 241 IALLPDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             L P  +    N  LVR++ D      T+Y  Y           A R ++  K R W
Sbjct: 257 ALLTPSALPALRNGTLVRVLPDHKMQKMTIYAMY-----------ASRQYLDAKIRTW 303


>gi|209546343|ref|YP_002278233.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539200|gb|ACI59133.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 297

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 5/177 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +A++G+F  AA+QL +  ++ISR++S LE  +  KL  R  R + LT +
Sbjct: 9   LDWDDLRHFLALAQAGTFLGAAKQLGVEHATISRRVSSLEATLERKLIDRRGRRIILTPE 68

Query: 63  GSKLHRVTSEVYHKLETTQIEL--QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           G K+ R  + +   L+T  +E   + S+ +  G +RI+    L   LL   +      +P
Sbjct: 69  GEKVARHAAVI--ALQTAAVEQIGRSSATEVRGHVRISAPPALSSVLLAKPIVAIRRDHP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +QI L+ + +   ++   AD A+RL +P      I  KL  +  + +A+  YL+  
Sbjct: 127 GVQITLVGEKRFTSLNRREADIAVRLSRPEDGDYSIT-KLHELTFNLFASKRYLETV 182


>gi|167571022|ref|ZP_02363896.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 326

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 29/302 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  ++ +  +P G LR+A +  L    +   +  +   YP +++QL 
Sbjct: 67  DGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRVTPLVDSYRRQYPKVRVQLT 126

Query: 128 LDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L    +D I   Y    +   +   + +LI   L+   +   AAP Y++    P    +L
Sbjct: 127 LTEGPLDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAPHRPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIA 242
            +H  I     +P       W   VD P     +  LQ    VNS   +    + G+GI+
Sbjct: 187 VRHACIA----LPADQHSSTW-RFVD-PDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS 240

Query: 243 LLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP+  + D   +  LVRI+ D  +  P   +   YP             N  FL AR  
Sbjct: 241 VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYP-------------NRQFLPARTR 287

Query: 298 KF 299
            F
Sbjct: 288 SF 289


>gi|160876896|ref|YP_001556212.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160862418|gb|ABX50952.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315269100|gb|ADT95953.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 295

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 122/275 (44%), Gaps = 23/275 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F +VA+  SF+ A+EQL  S+  +SR +  LE E+G +L +R  R +++TE G  L 
Sbjct: 6   LQSFMLVAKMHSFSAASEQLGASKGLVSRHVKSLEDEMGCQLLHRTTRRVSMTEAGQALF 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+          +Q+ +    G L+     +LG+ LL   L +F+  YP ++++L 
Sbjct: 66  GKACEIERLANEAGRLVQDLTQDSCGTLKFTAPTELGKKLLSPMLLQFIAAYPQVKLELC 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +    D+     D A+R      S ++I R L  I  H            E     +L 
Sbjct: 126 FEQNIQDVEFGKFDLALR-TSIAHSDNIIARYLGRIR-HVLVVAPAHPAAAEVRHPDDLH 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-----CLQVNSYLSIMQYCVLGSGIA 242
            + L++ G+          W   V  P+    ++      L  ++Y +     + G+GIA
Sbjct: 184 HYRLLSSGET--------QW---VFEPLAGDSLTLTFEPTLCSSNYATTHLLTLSGTGIA 232

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEAL 277
            LP Y+V+++     I +  +T     + CYP  L
Sbjct: 233 SLPYYLVEED-----IAQHKLTLLVPQWQCYPHEL 262


>gi|70731430|ref|YP_261171.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345729|gb|AAY93335.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 301

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 135/295 (45%), Gaps = 17/295 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V     F  A   L + +S +SR+IS LE  +G++L +R +R  +LTE G
Sbjct: 3   DLNTLYYFTQVVEHRGFAAAGRALDMPKSKLSRRISQLEERLGVRLIHRTSRHCSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++    +  + E     ++ +  +P G +R+A    L  + +   L  F+L YP ++
Sbjct: 63  QEYYQRCLAMRVEAEGAAEVIERNRSEPQGLVRVACPTALLNSWVGPMLTRFMLKYPLVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D A+R+R  P++++ L+ + L          P +L+    P +
Sbjct: 123 LFIESTNRRVDLIHEGFDIALRVRFPPLENTDLVMKVLGNSTQCLVGHPDFLQRLSGPAT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-G 240
             +L     + +G        ++ W L   D      R     V   L  +++ VL S G
Sbjct: 183 PADLSGLPSVHWG----AAQREYQWQLLGPDGAEALIRHRPRMVTDDLLALRHAVLASIG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           IA LP  +V+++    R++E  + P +      V+  +P      G L + R+ I
Sbjct: 239 IAHLPKVVVREDLEAGRLLE--LVPDWAPRCGIVHAIFP---SRRGLLPSVRSLI 288


>gi|328725331|ref|XP_003248431.1| PREDICTED: putative transcriptional regulator-like [Acyrthosiphon
           pisum]
          Length = 299

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 143/315 (45%), Gaps = 37/315 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA  G+FT AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPIFIAVAEEGNFTKAAARLGITRSAVSQGIRRLEDAFGTMLVMRTTRSVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLY 119
           E G +L    S     ++    ++  S  KP G LRIA T  + +  L G L   F +  
Sbjct: 61  EAGEQLRASLSLPLSGIDAALDDIA-SDNKPRGLLRIAVT-SIAEEFLSGPLIASFAVAN 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSL------IQRKLVTIHMHAYAAPHY 173
           P +++ +++ +++ DI     D  +RL + I+   +      +QR++V       A+P Y
Sbjct: 119 PLVKLDIVVTDEEFDIVAAGYDAGVRLGEVIEKDMIAVPLTGMQREVVV------ASPSY 172

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSY 228
           L     P+  +EL  H  I  G      +  + W         D  + EP+I+    N  
Sbjct: 173 LAANGTPVHPRELVHHQCI--GWRPSPEVAPYRWPFEEKGRAFDLAV-EPQITT---NDL 226

Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKL 283
             +++  + G GI L      +   ++  LV ++ + +   P F +YF  P+      KL
Sbjct: 227 RLMLRLALAGGGITLATQETFRPYIESGQLVSLLNEFLPQFPGFYLYF--PQRRNIAPKL 284

Query: 284 KAFRNFIFLKARDWK 298
           +A  + +    R+W+
Sbjct: 285 RALIDHV----REWR 295


>gi|296102954|ref|YP_003613100.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057413|gb|ADF62151.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 301

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 125/291 (42%), Gaps = 20/291 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   G F  A   L L +S +SR+I+ LE  +G++L  R  R  T+TE G   ++  
Sbjct: 10  FVKVVDYGGFAAAGRALDLPKSRLSRRIAQLEERLGVRLIQRTTRQFTVTEVGQTFYQHC 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  + E  +  +     +P G +R+   + L    +   L  F++ YP I +QL   N
Sbjct: 70  KAMMVEAEAAEEAVAALQAEPRGIVRLTCPVTLLHVHVGPMLARFMVRYPGINLQLEATN 129

Query: 131 KDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  +  D AIR+R +P   S L+ R L        A P  ++   +P    EL   
Sbjct: 130 RRVDLVGEGVDVAIRVRPRPFDDSDLVLRVLADRGHCLVAGPALIERLGKPSMPSELSAW 189

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQYCVLGSGIA 242
             ++ G+   K +  +        P G        PR   L     L++ +  + G G+ 
Sbjct: 190 PGLSMGE--GKHIHKWQLCG----PEGAKAEIHFTPR---LITTDMLALREAAMAGIGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP  +VKD   +  L+R++E        ++  YP        ++A  +F+
Sbjct: 241 QLPILMVKDQLASGELIRVLEAWEPKREVIHAVYPSRRGLLPSVRALVDFL 291


>gi|241762740|ref|ZP_04760804.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241368159|gb|EER62351.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 297

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 112/251 (44%), Gaps = 21/251 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D L +F   A +GS T AAE LH++  + SR+++ LE +  ++LF RH RGLTLT  G
Sbjct: 4   DLDSLLLFSRAAETGSLTKAAETLHIAAPAASRRLALLEHQFRVQLFDRHPRGLTLTPAG 63

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +   +  +QIEL   +   +  LR+          L  +L +F  L+PD  
Sbjct: 64  ACLLEHVRGILDAVYRSQIELSNYATGQAAVLRVCANTSAMAQFLPQDLADFQELHPD-- 121

Query: 124 IQLILDNKDID-----ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I+L+LD +  +     +    AD AI L  P        + L T    +       +  +
Sbjct: 122 IRLVLDEQWSEACANTVRAARADLAIVLEGP------WTKGLPTWPYRSDRIAAVFRRGK 175

Query: 179 EP----LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            P    L++ +L   NL+   D           LA      G+      +V S+ ++ + 
Sbjct: 176 APNGDCLALVDLMGQNLVALEDRSSM----MRLLAEKAAQAGQTFTLGAKVKSFEAVCRL 231

Query: 235 CVLGSGIALLP 245
             +GSG+ LLP
Sbjct: 232 VQVGSGVGLLP 242


>gi|146341706|ref|YP_001206754.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146194512|emb|CAL78537.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 332

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 13/253 (5%)

Query: 7   KLRVF---YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +LR+F     VA   SFT AA +L ++Q ++SRQI  +E E+G  LF R  RG+TLTE G
Sbjct: 2   ELRLFRYCVAVAEEASFTRAAARLRIAQPALSRQIKAVEQEIGFALFQRGLRGVTLTEAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQN-LLQGNLKEFLLLYPDI 122
             L      V  + E    + + +     G LRI  T     N  + G +++F   YPD+
Sbjct: 62  RVLIASARSVLAEAEAAVQKARRAGRGELGLLRIGFTASASFNPFVTGAIRDFRTAYPDV 121

Query: 123 QIQLILDNKDI---DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I+LI +         +    D A     P +   L+ ++ VT  +       + +  R+
Sbjct: 122 EIELIEEATSFLLERFANGRLDVAFIRPAPGEVDHLLSQRAVTEPLVVAMPSAHKQAARK 181

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYL-SIMQYCVL 237
            +++  L     I +    P     F+ + +  +  G  P+I  LQV   L S++     
Sbjct: 182 SVALASLADDAFILYPR--PNGRALFDSIVSACQAAGFSPKI--LQVAPQLTSVVNLVAT 237

Query: 238 GSGIALLPDYIVK 250
           G G++++P  + +
Sbjct: 238 GIGVSIVPRSMAQ 250


>gi|170723647|ref|YP_001751335.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169761650|gb|ACA74966.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 304

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 121/289 (41%), Gaps = 25/289 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F + A + SF  AAE+LH++  ++SRQ+  LE  +G++LF R  R + LT  G  LH
Sbjct: 9   LRYFDIAAETESFVRAAERLHVTHGAVSRQVRLLEESLGVELFERRNRAIFLTPAGRALH 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  ++ +LE+    LQ+   +P   L ++    +    L   L  F   +PD+++ L+
Sbjct: 69  GTTQAIFEQLESAVQRLQQQ--EPDNVLVLSCEPTIAMRWLIPRLPRFHAAHPDLRLHLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                +D +    D A+R                    H     H LK C E +     D
Sbjct: 127 AAGGPLDFARSGVDLALRRDD----------------FHWPPTLHALKVCDEWIGPVNRD 170

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS---YLSIMQYCVLGSGIALL 244
               +     +        W A + R  G+    C + +    YLS +Q    G G+A+ 
Sbjct: 171 GGTALDGQRQLHSNTRPSAWPAWL-RLSGQQARHCQRSDYEHFYLS-LQAASAGLGLAIA 228

Query: 245 PDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +V+D  +  ++      +      +   P+ L + GK + F +++ 
Sbjct: 229 SALMVRDELDSGQLQAPFGFLRDGSAYHLLSPQPLDDGGKRQRFADWVM 277


>gi|330809953|ref|YP_004354415.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378061|gb|AEA69411.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 302

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 1/176 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A   L + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLGARLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R    +  + E     +   S +P G+LR+++ + L    L   ++ FL+ YP +Q
Sbjct: 63  ERYLRHCQAMLLEAEMADEAVASMSSEPRGRLRVSSPVGLAHQFLPVVIETFLVKYPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           + + L N+ +D+  +  D A+R+R    +   L+ R+L    +   A+P +++  R
Sbjct: 123 LDMTLLNRRVDLIGEGIDVALRVRDLGDEDPLLMTRRLRQARLMMVASPAFVEGRR 178


>gi|300693061|ref|YP_003749034.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299075098|emb|CBJ34380.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 289

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 4/175 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             WD +R F  +AR GS + AA +L +  ++++R+   LE  +G++LF R  RG  LT +
Sbjct: 1   MQWDDVRYFLALAREGSLSAAARRLGVEHTTVARRADALEQALGVRLFDRLPRGWRLTAE 60

Query: 63  GSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G  L  R            +      S++  G +R++    L  +++  NL      +P 
Sbjct: 61  GGALAERAGRMEQEAAGFARAAAGAGSLR--GTVRVSAPPTLASHIIAPNLAALRRWWPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           I + L+ + ++ ++    AD A+RL +P  S++L  R L  +    YA P  L  
Sbjct: 119 IDLVLLGEKRNANLMAHEADLAVRLSRPT-SAALATRPLGDLGYGLYATPEALAR 172


>gi|167854757|ref|ZP_02477536.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
           29755]
 gi|167854171|gb|EDS25406.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
           29755]
          Length = 285

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 120/249 (48%), Gaps = 10/249 (4%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+   +F  V  + SFT AA+Q  +S +  S+ ++ LE  + ++L  R  R ++ TE 
Sbjct: 2   DKLKAINLFCKVIETQSFTQAAQQEQISLAMASKLVAQLEEHLNVRLLQRTTRRISPTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + ++L+  +  +   +    GKL ++  +D G   +  +L  F   YP +
Sbjct: 62  GLLFYQRCQPILNELKDAEACVTNITSTLQGKLTMSLPMDFGSRFVAPHLHRFTETYPHL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L   ++ +D+  +  D  +R+ K ++ SS++ +++        A+P Y +    P +
Sbjct: 122 QLNLEFSDRRVDVVAEGYDLVLRIGK-LEDSSIVAKRIAQAQHLIVASPRYFEKFGTPQT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +H  + +     + +  FN      +   +P+      N Y +++Q    G GI 
Sbjct: 181 AWELQQHQCLLYES---QTLWQFN--ENGHQIKLKPQSQVYSNNGY-ALVQMARAGHGII 234

Query: 243 LLPDYIVKD 251
            +P +++KD
Sbjct: 235 NIPKFLLKD 243


>gi|114706120|ref|ZP_01439023.1| transcriptional regulator, LysR family protein [Fulvimarina pelagi
           HTCC2506]
 gi|114538966|gb|EAU42087.1| transcriptional regulator, LysR family protein [Fulvimarina pelagi
           HTCC2506]
          Length = 298

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 121/278 (43%), Gaps = 16/278 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F   AR G FT AAE+L+L+Q +ISR+I  LE  +G  LF+R  R + LT+ G +
Sbjct: 12  DYLVAFDAAARLGGFTLAAEELNLTQGAISRKIRLLEENLGKPLFFRTHRAVHLTDAGRR 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            HR        +     E+++  ++P  ++ IA T  +    L   L       P I+I+
Sbjct: 72  YHRTVVHALESIAKASAEVRQGDLRP--RVAIAATQSVSTLWLLPRLNRLRSGLPGIEIE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL--KNCREPLSI 183
           L   + D +     +D  I LR   +        L+   +   A P Y+  ++ REP   
Sbjct: 130 LTSSDDDRECLESGSDLII-LRGEGRWPGFEGAMLLNESICPVADPDYIAKRSVREP--- 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++     LI       + ++   WL  A VD PI   RI     N+Y   +     G G+
Sbjct: 186 RDFLNCTLIDVASHHTEWLDWKGWLSAAGVDEPIEAERI---LFNTYALAIDAACQGLGV 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEA 276
           AL   +++  +     LVR +   +  +   Y  +P  
Sbjct: 243 ALGWHHLIDRHILEGRLVRPLPLTVETNSGYYLLHPRG 280


>gi|113869587|ref|YP_728076.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528363|emb|CAJ94708.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 304

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 18/297 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F   AR GSFT AA++L ++Q +ISR I+ LE   G  L  R+A  L LT+ G KL
Sbjct: 3   ELHAFATAARLGSFTRAADELCVTQGAISRAIARLEAHFGQPLLQRNAHRLVLTDAGRKL 62

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +E    +E     L+  + +    L +  T  L    L   L +F   +P+I++  
Sbjct: 63  LEAVAEPLATIEHASATLRAGNRRHHLTLSVVPT--LASVWLVPRLPDFHRRHPEIRLDF 120

Query: 127 ILDNKDIDISMDYADCAIRLRKP-----IQSSSLIQRKLVTI-HMHAYAAPHYLKNCREP 180
           +   +D D+S    D AI   +      +Q+  ++ R+LV + H     A       + P
Sbjct: 121 VPYQRDEDLSGPSPDAAILAGEAGKWPGLQADYVVGRELVPVCHPDRARARREAGRWQSP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +  LD+  L  +    P   +  NWL     P   PR+S    +    ++Q      G
Sbjct: 181 AEL--LDEPLL--YHTTAPANWQ--NWLQAAGVPNAAPRLST-AFDQVSILIQAVRADIG 233

Query: 241 IALLPDYIVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+L   +V+D     R+       IT     + C P+  ++   L  FR+++   A
Sbjct: 234 VAVLQRCLVRDEIAAGRVTAPFDLPITLQRGYFLCAPKERRDHPALNCFRDWLLETA 290


>gi|283798548|ref|ZP_06347701.1| transcriptional regulator, LysR family [Clostridium sp. M62/1]
 gi|291073815|gb|EFE11179.1| transcriptional regulator, LysR family [Clostridium sp. M62/1]
 gi|295115575|emb|CBL36422.1| Transcriptional regulator [butyrate-producing bacterium SM4/1]
          Length = 296

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 68/126 (53%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  ++D  R+FY VA+  SFT AA  L  +Q +I+R ++ LE ++G +LF R  RG++LT
Sbjct: 1   MEINYDYYRIFYYVAKYKSFTQAANILMNNQPNITRSMNNLENQLGCRLFIRSNRGVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L    S  Y +L+  + EL        G + I  +      LL   L EF  L+P
Sbjct: 61  PEGDRLFHHVSIAYKQLQMAESELGRGKSIQDGTVSIGASETALHELLLSRLSEFRTLFP 120

Query: 121 DIQIQL 126
            + I++
Sbjct: 121 GVHIRI 126


>gi|154687402|ref|YP_001422563.1| YusT [Bacillus amyloliquefaciens FZB42]
 gi|154353253|gb|ABS75332.1| YusT [Bacillus amyloliquefaciens FZB42]
          Length = 291

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 24/290 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F +VAR GS T AA +L   QS+++ +I  LE ++  +LF+RH RG+TL+  G+ L 
Sbjct: 6   LRIFQMVAREGSITKAAARLGYVQSNVTARIRQLEEDLKTELFFRHNRGMTLSSSGTVLL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   +E  ++ L  S+ KPSG L I +T       L   L  +   YPD+++ L 
Sbjct: 66  HYADQVVGLIEEAKMALA-STDKPSGPLMIGSTQTTAAVRLPKLLASYYERYPDVELSLT 124

Query: 128 ------LDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
                 + +K +   +D A        P + S    + + V +   A  A    +  ++P
Sbjct: 125 TGHTQYVTDKVLRYELDGAFIGCHFHHPDLHSIPAFEEEAVVVTPAAVTAIE--EAVKKP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +         T+ D + +      WL      IG    + ++  +  +I+     G G
Sbjct: 183 LLVYSTG----CTYRDTLER------WL----HSIGTAHPAIMEFGTLEAIIGGVTAGLG 228

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I LLP  ++  +  L  +    I  SF++        K++    A R FI
Sbjct: 229 ITLLPRSVITQHAALGAVRIWTIPESFSMMKTEFVTRKDSYMSCALRAFI 278


>gi|73541591|ref|YP_296111.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72119004|gb|AAZ61267.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 308

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 114/250 (45%), Gaps = 10/250 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   VAR  SF  AA +L +S +++S  ++GLE  + ++LF R  R + +T+ G + 
Sbjct: 8   ELEVVLAVARRSSFRGAALELGMSATAVSSAVAGLEARLKVRLFNRSTRSVAMTDAGRRY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    +++    E    S  PSG LRI     +   LL+    ++   YP + I +
Sbjct: 68  VERIAPALAEIQRANEEAAMESAAPSGTLRINAPQGVALLLLEPLFHQYAQRYPQVFIDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +++ ID+  +  D  IRL + +    +       + M   A P YLK    P   ++L
Sbjct: 128 VSESRLIDVVAEGFDAGIRLAESVPQDMIAVPLSRDLRMLVVATPDYLKRNGTPRHPRDL 187

Query: 187 DKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            KH  I    + G +    ++  +    ++ P+       + ++   +I Q  +LG GI 
Sbjct: 188 LKHQSIGMRMSHGGIYQWELKHKSEKLQMELPV------RMALSEMPAIKQAVLLGLGIG 241

Query: 243 LLPDYIVKDN 252
            + ++ + + 
Sbjct: 242 FISEWFIDEE 251


>gi|85712208|ref|ZP_01043260.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
 gi|85694016|gb|EAQ31962.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
          Length = 303

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 133/301 (44%), Gaps = 22/301 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  +  +  F +VAR GSF+ AAE+L +SQS++S QI  LE  +G  LF R  R L LT
Sbjct: 1   MSVPFRAIHYFAMVARRGSFSKAAEELFVSQSAVSHQIKLLEERLGQALFIRKGRQLLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   ++   E   ++E    +LQ      +G +R+A+   L    L   +  F   YP
Sbjct: 61  AAGEAFYQNIEEPLAQIEREFSQLQHGD---AGFVRLASYGSLAVKWLIPAVDRFRQRYP 117

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA---PHYLKNC 177
           ++ + L +  +D       ADC I  + P   S      L   +++ Y +      L + 
Sbjct: 118 NVDLTLTMLTEDGGFERALADCFITTQPP--KSGFEVTHLYDEYLYPYCSYDIRARLNDL 175

Query: 178 REPLSIQELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIM--- 232
           R+P ++      +   TF    P     ++W     +  G  R+ S  +V+ +  ++   
Sbjct: 176 RDPSALLAFPLLSATYTFAHATP----GYDWKMWFKQ--GSVRLPSSAKVHHFSHLLLAA 229

Query: 233 QYCVLGSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +      GIALL +++    +    LVR+    +    + YF  P  L N   ++  R++
Sbjct: 230 EAAKHSHGIALLNEFMTTQREREQELVRLPMHGLKTGDSFYFVVPSTLSNRSSIQVLRDW 289

Query: 290 I 290
           +
Sbjct: 290 L 290


>gi|330952464|gb|EGH52724.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 307

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 129/306 (42%), Gaps = 39/306 (12%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AA +L L+Q ++ RQI GLE  +G++LF R  RG+ LTE G    R  
Sbjct: 14  FEAAARHESFTKAAHELSLTQGAVCRQIGGLEEFLGVELFRRSRRGVKLTEAGLSYSRRV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL---- 126
           S+    +E   + +     + +  + +A     G   L   LK+F   +PD+ + L    
Sbjct: 74  SQQLDAVERDTLSVM--GQQGANAIELAVVPTFGTQWLLPRLKDFQHKHPDVTVHLTNRT 131

Query: 127 ---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +  + D D ++ + D           S     +L++ +     +P +L+  R+ L  
Sbjct: 132 RPFLFADTDFDAAIYFGDA--------DWSGTQSHRLMSENSMPVCSPSFLEG-RDSLGA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +EL +  L+       +    + W          V R +  PR     +     + Q  +
Sbjct: 183 RELAELPLLQ------QTTRPYAWRQWFNAQDLDVARDMTGPRYELFSM-----LAQAAM 231

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              GIAL+P ++++       LV      +  S   +   PE    +  L AFR+++  +
Sbjct: 232 HDMGIALIPPFLIQRELQEKRLVIANTRSLPGSKAYHLMIPERKVESASLTAFRDWLIEQ 291

Query: 294 ARDWKF 299
           AR ++ 
Sbjct: 292 ARAYQL 297


>gi|330502908|ref|YP_004379777.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328917194|gb|AEB58025.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 293

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 80/140 (57%), Gaps = 4/140 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  F  +A +GSF+ A E+LHL+Q ++S++I+GLE ++G++LF R  R + LT+ 
Sbjct: 1   MDLANLNAFIAIAETGSFSEAGERLHLTQPAVSKRIAGLEQQLGVRLFDRLGREIGLTQA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++ + L+ T+  L   S + SG+L +AT+  +G + L   L+ F   +P  
Sbjct: 61  GRALLPRAYQILNVLDDTRRALTNLSGEVSGRLTLATSHHIGLHRLPALLRAFTRAHP-- 118

Query: 123 QIQLILDNKDIDISMDYADC 142
             Q+ LD + +D  + Y + 
Sbjct: 119 --QVALDIQFLDSEVAYEEV 136


>gi|325168386|ref|YP_004280176.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064109|gb|ADY67798.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 309

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 12/193 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF VVAR  SFT AA +L + QS++S  IS LE ++G+ L  R  R +  T+ G +L 
Sbjct: 9   LAVFEVVARCRSFTKAASELGIKQSTLSYTISQLEKKIGVPLIARTTRSVAPTDPGRRLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +       L      LQE     +G +R+ T     +++++  L  F   YP + I++ 
Sbjct: 69  EILGPAMRDLAEEMQTLQEERATVTGAVRVTTIPVAFESIIRPMLSSFCQRYPHVVIEIS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHYLKNCREPL 181
            +    D+     D  IR        SLI + +V + + A        AP Y      P+
Sbjct: 129 TNEGLDDVVAQGFDGGIRF------GSLIDKDMVALSLTATTPVVIVGAPSYFDKYPVPI 182

Query: 182 SIQELDKHNLITF 194
           + ++L  H  +++
Sbjct: 183 NPEDLIAHRTVSY 195


>gi|307946003|ref|ZP_07661338.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307769667|gb|EFO28893.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 293

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 128/297 (43%), Gaps = 26/297 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT-LTEQ 62
           +W+ LR    V R GSF  AA  L +  +++SR+I  L+ ++G  L  R   G   LT  
Sbjct: 5   NWNDLRCLLAVKRYGSFGAAAAVLRVDTTTVSRRIRTLQEQLGALLIERRTDGSARLTNL 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++ + + E   S     G +R+ +   L   L+  N       YPD+
Sbjct: 65  GQAAAERAERIELEVSSLEAEASGSRQNVCGCVRLTSVPMLLNRLVIPNSTALTAAYPDL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-REPL 181
           ++QL  D  ++ +S    D A+RL +P     +++ K + +  HA    +  K+C  +P 
Sbjct: 125 ELQLHPDLTNLSLSKRETDMALRLSRPEAGGLMVKAKRLGVLKHAV---YCAKSCAADPA 181

Query: 182 SI------QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           S       QE  +H        +P+      W+    R +G    + ++V    S M+  
Sbjct: 182 SQLPWVTHQEAWQH--------LPQ----VKWMHDHVRRVGGT-FASVRVGDADSAMEAV 228

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSF--TVYFCYPEALKNTGKLKAFRNFI 290
             G G ++LP  +   +P LVR+ E+  TP     V+      L +  + K   N++
Sbjct: 229 ARGVGRSVLPTLLADADPRLVRLEEEGTTPDIEREVWIMVHADLASLPRCKVVWNWL 285


>gi|242311028|ref|ZP_04810045.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|242134267|gb|EES20670.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 345

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 57  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 116

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G   + T        L   L +     P + ++++
Sbjct: 117 AAVRQSLDALRAATADIR--SRRANGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 174

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
             ++DID   ++AD AI           S+ L Q  +  +   A+   H          R
Sbjct: 175 T-SQDIDPQREHADVAILFGAGDWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLLR 233

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 234 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 282

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 283 NQGVALGWAPLV-DTPIAAGQLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 339


>gi|238894091|ref|YP_002918825.1| hypothetical transcriptional activator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546407|dbj|BAH62758.1| hypothetical transcriptional activator [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 301

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 106/258 (41%), Gaps = 22/258 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W     F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   + E 
Sbjct: 7   FAW-----FVQVVDHGGFAAAGRALDQPKSKLSRRIAQLEERLGVRLIQRTTRQFAVAEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +  + E  Q  ++    +P G +RI   + L    +   L  F+  YP +
Sbjct: 62  GQTFYQHCKAMLIEAEAAQQAVETLRAEPRGSVRITCPVTLLHVHIGPMLARFMARYPGV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + L   N+ +D+  +  D AIR+R +PI+ S L+ R L        A+P  +     P 
Sbjct: 122 TLHLEATNRRVDVVGEGIDVAIRVRPRPIEDSDLVMRVLADRGHRLVASPDLISRLGRPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-------PRISCLQVNSYLSIMQY 234
           +  EL     ++ G           W  T   P G        PR+        L++ + 
Sbjct: 182 APSELSAWPGLSLG----ANKHQHKWQLT--GPGGARAEVYFTPRMVT---TDMLALREA 232

Query: 235 CVLGSGIALLPDYIVKDN 252
            + G G+  LP  +V+D 
Sbjct: 233 AMAGVGVVQLPLLMVRDQ 250


>gi|254487862|ref|ZP_05101067.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214044731|gb|EEB85369.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 297

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 129/301 (42%), Gaps = 31/301 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR GS T AA++L L+QS+ISRQ+  LE ++ + L  R  R L LT+ G+ 
Sbjct: 12  NALLAFEAVARLGSATQAAQELSLTQSAISRQLKTLEEQLNVPLLDRQGRQLILTDAGAS 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V ++L    I  + + +  +G L +A     G + L   L++F   +P++ + 
Sbjct: 72  YVLQVRDVLNRLAQASISARTNPM--AGALNLAILPGFGMHWLAPRLRDFAQAHPEVTVN 129

Query: 126 LILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           L              D AI   K     +    L+   +V +      AP  L    E  
Sbjct: 130 LSTRLHPFAFQNTAFDAAIHFGKEDWPGVGYLHLMPETVVPV-----CAPELLDAPLE-- 182

Query: 182 SIQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
                D   ++++     D  P+      WLA +   + E   S +  + + ++ Q  V 
Sbjct: 183 -----DARAILSYPLLHLDTRPRGWA--RWLAALG--VTEEPPSGMMFDQFSTMAQAAVH 233

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G G+ALLP    D  ++D   LV             Y  +PE    T  L++F++++  +
Sbjct: 234 GLGVALLPTFSADPYLRDG-QLVLASTQTTQSIGNYYLVWPEERAETAALRSFKSWLAGQ 292

Query: 294 A 294
           A
Sbjct: 293 A 293


>gi|300312645|ref|YP_003776737.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075430|gb|ADJ64829.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 287

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 3/175 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  SFT AAE+L ++Q+++S Q+  LE  +G+ LF R  RGL LT++G  
Sbjct: 6   NALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVALFRRLPRGLALTDEGLA 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V ++ + ++     + ++   +    + +  T  +G   L   L++F   +P + ++
Sbjct: 66  LLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVG--WLMPRLRQFQQQHPFVDLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           L+ +N  +D++ +  D AIR        +  +R L    +    AP      R P
Sbjct: 124 LLTNNNRVDLAGEGLDYAIRFGDGAWHGTQAER-LFEAPLAPMCAPAIAARLRSP 177


>gi|229077242|ref|ZP_04209936.1| Transcriptional regulator, LysR [Bacillus cereus Rock4-18]
 gi|228706073|gb|EEL58368.1| Transcriptional regulator, LysR [Bacillus cereus Rock4-18]
          Length = 285

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 126/264 (47%), Gaps = 37/264 (14%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L VF  VA  GS + AA+ L   QS+++ +I  LE E+G+ LFYR+ +G+TL   
Sbjct: 1   MDIKDLTVFKKVAEEGSISKAAKSLSYVQSNVTMKIKQLEDELGVPLFYRNGKGVTLNSN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T ++    E +   +Q +  KP G L+I +T       L   LK++   YP++
Sbjct: 61  GEILLTYTRKILDLTEQSIRLVQSNQSKPLGTLKIGSTNSTVAVRLPPLLKKYCEKYPEV 120

Query: 123 QI-----------QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP 171
           ++           QL+L+ K     ++ A     +  P  +S L  ++ +TI   +Y   
Sbjct: 121 ELVLETHKSTELTQLVLERK-----LEGAFIVEDVHHPDLTSFLFCQEELTI--ISYQPL 173

Query: 172 HYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSY 228
           H         ++QELDK N++ FG+    C    ++   VD+ + E  I     L+  + 
Sbjct: 174 H---------TLQELDKVNMLAFGN---GC----HYRNRVDKWLKEAGIYPKRVLEFGTI 217

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN 252
            +I+     G GIA++   I+KD+
Sbjct: 218 EAIIGCVKAGMGIAVMVKSILKDH 241


>gi|254508033|ref|ZP_05120160.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219549000|gb|EED25998.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 303

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  +        A   L LS ++++ ++  LE   G+KL  R  R L+LT+ G+  H
Sbjct: 7   MEMFVAIVHHRGMASAGRALGLSPATVTARLQNLEQRYGVKLLNRSTRHLSLTDAGALYH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   +  T+  LQ  + +  G L+I+   D+G+  +   L  F  ++PD+   L 
Sbjct: 67  QSCIEILESVRATENVLQTGTTEVKGPLKISAPKDIGKQYIAPLLSSFCRMHPDVIPFLY 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++   +++    D  IR  + +  S LI RKL T      A+P YL +  EP S  EL 
Sbjct: 127 LNDGLSNMAESGLDLVIRYGE-LADSQLISRKLATSQRVLCASPQYLADYGEPKSPTELM 185

Query: 188 KHNLITF 194
            H  +  
Sbjct: 186 AHQCLAL 192


>gi|168183330|ref|ZP_02617994.1| transcriptional regulator, LysR family [Clostridium botulinum Bf]
 gi|237793968|ref|YP_002861520.1| LysR family transcriptional regulator [Clostridium botulinum Ba4
           str. 657]
 gi|182673514|gb|EDT85475.1| transcriptional regulator, LysR family [Clostridium botulinum Bf]
 gi|229262145|gb|ACQ53178.1| transcriptional regulator, LysR family [Clostridium botulinum Ba4
           str. 657]
          Length = 291

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 138/298 (46%), Gaps = 26/298 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D  RVF  V    SF+ AA++L+++Q ++S+ I  LE E+ I+LF R  +G+ LT +G 
Sbjct: 5   LDLYRVFGCVGECKSFSKAAKELYMTQPAVSQSIMQLEKELDIRLFTRTPKGVILTNEGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    +     +E  + ++ +S     G L+I       +  L   L++F + YP++++
Sbjct: 65  ILFEYVTSAISLIEAGEKKMSDSKNLMIGDLKIGVGDTTSKYFLLSYLEKFHIKYPNVKL 124

Query: 125 QLILDNKDIDI-------SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           + IL+   +++        +D A C +    PI+ S+L  +K + I         + K  
Sbjct: 125 K-ILNGTTVELCNLVKTGDIDLAICNL----PIEDSALEFKKCMKIQDIFVCGERFNKTI 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            EPLS  E+ K  LI             N+L +    I  P I   ++ ++  ++Q+  +
Sbjct: 180 SEPLSFVEISKMPLILLDGKSNSRQYVENYLLSKGVNIS-PEI---ELGAHDLLLQFAKI 235

Query: 238 GSGIALLP-----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GIA +      +Y+ K+    V+  E +  P   + FCY   LK+     A R F+
Sbjct: 236 NLGIACVVKEFSLEYLEKEILFEVKTKEPI--PKRNIGFCY---LKSVSLSPAARTFL 288


>gi|148974117|ref|ZP_01811650.1| Hypothetical transcriptional regulator, LysR family protein
           [Vibrionales bacterium SWAT-3]
 gi|145965814|gb|EDK31062.1| Hypothetical transcriptional regulator, LysR family protein
           [Vibrionales bacterium SWAT-3]
          Length = 312

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AA   +LS + IS+ I  LE+ +  +L +R  R  +LT+ G   +
Sbjct: 7   MKVFVYVVEQGSFRSAANHFNLSATMISKHIHHLESSLNSQLIHRTTRKQSLTDSGQLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   +   +  +Q    +P G ++I   +  G  +L   + +FL   P I ++L+
Sbjct: 67  RECKRILEDISNAENLIQTLENQPQGTVKINCPVTYGNKVLAPIVAKFLANNPTINVELV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N  +D      D  +R+   +  SSL+ R L    M   AAP YL    E   +++L 
Sbjct: 127 LNNDLVDPYSSDIDLIVRIGD-LSDSSLVARYLGDYEMCYCAAPEYLNQHAEIRVLEDLA 185

Query: 188 KHNLITF 194
           +H  + F
Sbjct: 186 QHPSLGF 192


>gi|332868893|ref|ZP_08438470.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332733041|gb|EGJ64242.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 326

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 129/269 (47%), Gaps = 22/269 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G 
Sbjct: 22  FDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLGQ 81

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +V  ++E  +  L +   +P G ++++    +    ++  L +FL  YP ++I
Sbjct: 82  EFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVEI 141

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R     
Sbjct: 142 SLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RTIKHY 200

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-------ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            EL     I+ G       +++ W         +VD P  +PRI     ++ L+ + Y V
Sbjct: 201 SELQDFPSISLG----TQKQNYIWHLCNIRNGESVDVPY-QPRIK----SNDLAGVYYAV 251

Query: 237 L-GSGIALLPDYIVKD---NPNLVRIMED 261
           + G GIA LP   V+       LV I+ D
Sbjct: 252 MDGLGIADLPFLTVESEIRKGTLVHILPD 280


>gi|255588711|ref|XP_002534694.1| HTH-type transcriptional activator ilvY, putative [Ricinus
           communis]
 gi|223524752|gb|EEF27692.1| HTH-type transcriptional activator ilvY, putative [Ricinus
           communis]
          Length = 296

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 117/273 (42%), Gaps = 24/273 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD   L++F  VA SGS T  AE+ HL+  S S +I G+E  + + L  R  RG+  T
Sbjct: 1   MRFDLTDLKLFIHVAESGSITAGAERAHLALPSASARIRGMEETLDVPLLQRGRRGVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L +   ++  ++E    +L + +    G++R+          L   L  FL  +P
Sbjct: 61  EAGRTLLQHARDITRQVEDMHADLAQFATGLKGQVRLLCNTSAMTEFLPDALAAFLKSHP 120

Query: 121 DIQI-----------QLILDN-KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168
            + I           Q I D   DI I  D  D A     P +   L+   L     H  
Sbjct: 121 QLSINLEERMSRDIVQAIADGVADIGIISDAVDHANLRTFPFRDDPLV---LAMARGHPL 177

Query: 169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNS 227
           A    LK  R    I  LD H+ I   D            A + R     R+ C +++ S
Sbjct: 178 AKALGLK--RHMPFIDALD-HDFIGLADDSAMQRNAAEQAARLGR-----RLHCKIRLRS 229

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIME 260
           + +I +    G+G+ALLP    + +P+ +R+++
Sbjct: 230 FEAICRMAASGAGLALLPATAARRSPDDLRVIK 262


>gi|169794406|ref|YP_001712199.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213159018|ref|YP_002321016.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215481961|ref|YP_002324143.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301347028|ref|ZP_07227769.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301512661|ref|ZP_07237898.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301594639|ref|ZP_07239647.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332854781|ref|ZP_08435544.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|169147333|emb|CAM85194.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|213058178|gb|ACJ43080.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986643|gb|ACJ56942.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332727783|gb|EGJ59187.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
          Length = 324

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 129/269 (47%), Gaps = 22/269 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G 
Sbjct: 20  FDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLGQ 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +V  ++E  +  L +   +P G ++++    +    ++  L +FL  YP ++I
Sbjct: 80  EFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVEI 139

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R     
Sbjct: 140 SLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RTIKHY 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-------ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            EL     I+ G       +++ W         +VD P  +PRI     ++ L+ + Y V
Sbjct: 199 SELQDFPSISLG----TQKQNYIWHLCNIRNGESVDVPY-QPRIK----SNDLAGVYYAV 249

Query: 237 L-GSGIALLPDYIVKDN---PNLVRIMED 261
           + G GIA LP   V+       LV I+ D
Sbjct: 250 MDGLGIADLPFLTVESEIRKGTLVHILPD 278


>gi|83952191|ref|ZP_00960923.1| probable transcriptional regulator [Roseovarius nubinhibens ISM]
 gi|83837197|gb|EAP76494.1| probable transcriptional regulator [Roseovarius nubinhibens ISM]
          Length = 295

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 124/285 (43%), Gaps = 23/285 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F    R  +F  AAE+L ++Q ++++Q+  LE  +G+ LF R  +GL L+E G  
Sbjct: 8   NGLRAFEAAGRHLTFRAAAEELGVTQGAVAQQVRQLEAGLGVALFERLPKGLMLSEAGRA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   +  + ++      L+ +     G++ I+ T       L  N+      +PD+ ++
Sbjct: 68  YHGRIAGAFDEMRQATAALRPT----PGRVTISVTPSFAAKWLIPNMAGLAERHPDVDLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   K      D  D A+R  +P   +S+    L    + A AAP  L + R P++  +
Sbjct: 124 ILATEKVSSFHGDGIDLAVRQGRPPFGASIEAVLLFAQELIAVAAPELLGDRRVPVTPAQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +         +PK  +         R IG  E     L ++     +     G G+AL
Sbjct: 184 LAQ---------LPKLRDAHGHWPGFLRQIGVAEESGRGLGLSQTALAIDAARAGQGVAL 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCY-----PEALKNT 280
           +  ++V  +    +LV++ E V+  +   Y        PEA+ + 
Sbjct: 235 VSRFLVARDLAEGSLVQVSEAVMRGAQDFYLLAQRGRRPEAVASV 279


>gi|307296904|ref|ZP_07576721.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306877625|gb|EFN08852.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 303

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 15/208 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +  SGSF+ AAE+L +S + +S  ++ LE  +G +L +R  R   LT QG      
Sbjct: 9   VFVAIVDSGSFSRAAERLAMSPTMVSTHLARLEDRLGTRLIHRTTRRFALTPQGHVFLEE 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   ++  +  ++ S + PSG++ +     +G   +   L +   L+P I ++L + 
Sbjct: 69  ARAILEAVDQAESRMRMSDMGPSGRVALDAPGAIGLRFVVPALPQLRALHPRIMLELSVG 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +    +  D  IR+  P +    +   L        A+P YL    EP +  +L  H
Sbjct: 129 DRSMMFRPEGFDMLIRVGVPAEGRGEVI-NLGRTRFVQVASPDYLARRGEPGTPDDLHDH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE 217
           + + +              ATVDRP+G+
Sbjct: 188 DCVLY--------------ATVDRPVGQ 201


>gi|167036290|ref|YP_001671521.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862778|gb|ABZ01186.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 303

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 118/262 (45%), Gaps = 9/262 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L +R +R  +LTE G
Sbjct: 3   DLNSLYYFTQVVEHGGFAPAGRALDMPKSKLSRRIADLEDRLGVRLLHRTSRHCSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E     ++ +  +P G +RI+    L  + +   L  ++L YP ++
Sbjct: 63  QAYYNRCLAMRVEAEGAAEIIERNRSEPRGLVRISCPTTLLNSWVGPMLTRYMLKYPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D A+R+R  P++++ ++ + L          P YL+   +   
Sbjct: 123 LFIESTNRRVDLLHEGFDIALRVRFPPLENTDMVMKVLSNSTQCLVGQPQYLEQLPKGFD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL----ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            Q L     + +G        ++ W         R I  P    +  +   ++  + V G
Sbjct: 183 PQLLGTLPSVHWG----SAQREYQWELFQGEGNSRSIVIPHKPRMVTDDLFALRHFVVAG 238

Query: 239 SGIALLPDYIVKDNPNLVRIME 260
            GIA LP   V+++    R++E
Sbjct: 239 VGIAHLPRVAVREDLAAGRLVE 260


>gi|332872787|ref|ZP_08440752.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|322509705|gb|ADX05159.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323519719|gb|ADX94100.1| LysR family transcriptional regulator [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332738948|gb|EGJ69810.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 324

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 129/269 (47%), Gaps = 22/269 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G 
Sbjct: 20  FDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLGQ 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +V  ++E  +  L +   +P G ++++    +    ++  L +FL  YP ++I
Sbjct: 80  EFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVEI 139

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R     
Sbjct: 140 SLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RTIKHY 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-------ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            EL     I+ G       +++ W         +VD P  +PRI     ++ L+ + Y V
Sbjct: 199 SELQDFPSISLG----TQKQNYIWHLCNIRNGESVDVPY-QPRIK----SNDLAGVYYAV 249

Query: 237 L-GSGIALLPDYIVKDN---PNLVRIMED 261
           + G GIA LP   V+       LV I+ D
Sbjct: 250 MDGLGIADLPFLTVESEIRKGTLVHILPD 278


>gi|238893620|ref|YP_002918354.1| putative LysR family regulatory protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545936|dbj|BAH62287.1| putative LysR-family bacterial regulatory protein [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 297

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 120/243 (49%), Gaps = 23/243 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VAR GS T AA ++ ++ S++S+ I  LE  VG+ LF RH RG+ +TE+G +L
Sbjct: 9   SLRSFEAVARLGSVTQAAHEMSVTHSAVSQHIKQLEALVGVTLFIRHGRGVRITEEG-RL 67

Query: 67  H--RVTSEVYHKLETTQIELQESSVKPSG-KLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++   + H  + T++      +KP   ++ +AT    G + L   L  F   +P I 
Sbjct: 68  YALQIREALQHIADATRM----VQIKPRTLEVTLATLPSFGCHWLLPRLARFQARHPQIA 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+     +++  +  D AIR+ +      +  R L        AAP Y +    P + 
Sbjct: 124 VRLLTSLAVVNLQQEGIDLAIRMGQG-DWEGMESRHLFADEQLVVAAPGY-RGGNLPTTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFN-WL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           Q +   ++I         ME +N W   A +++PI     S L++N    +++   LG+G
Sbjct: 182 QAIAASDIIF-------SMESWNAWCSQAGLEKPIVP---SGLRLNDSNLVLEAVRLGAG 231

Query: 241 IAL 243
           +AL
Sbjct: 232 VAL 234


>gi|226935205|gb|ACO92653.1| LysR-type transcriptional regulator [Burkholderia sp. JS667]
          Length = 295

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 14/255 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +R F  + R GS+  AAE   +  S++ R+I  LE   G  LF R   G   +   +
Sbjct: 11  WDLIRAFLALERHGSYEVAAELEGIDDSTLRRRIRLLEQHFGRALFVRAEGGWRAS---A 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+ + S    ++E       +     +G +RI + +D+               YP +  
Sbjct: 68  DLNALISAA-QRMEEAARSFCQDHHAGAGVIRI-SVMDVFAQRFAPVFAALSEKYPKLVF 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQ-RKLVTIHMHAYAAPHYLKNCREPLSI 183
            +  +   +++  D  D A+RL +P ++S+ ++ RKL  + + AYA+  YLK   E    
Sbjct: 126 TITTEAHFVNLEQDQVDIAVRLARPERNSNALRVRKLGDVAVGAYASDAYLKRTTELAH- 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +KH L+     +    +D +++ A++D    G      LQ +S+  + Q C LG G+
Sbjct: 185 ---EKHQLLAMN--LQFFHQDHHFIYASLDWSRFGLSGQVRLQSDSFAPLAQLCALGQGL 239

Query: 242 ALLPDYIVKDNPNLV 256
           ALLP ++  + P LV
Sbjct: 240 ALLPKFLAAEYPQLV 254


>gi|209519728|ref|ZP_03268516.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499872|gb|EDZ99939.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 306

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 17/254 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             WD +R F  +AR GS +  A +L +  S+++R++  LE  +G++LF R  +G +LT +
Sbjct: 17  LQWDDIRYFLELARVGSLSGVARRLSVEHSTVARRVEALEQSLGVRLFDRLPKGWSLTPE 76

Query: 63  GSKLHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G  L R    +  + +  ++  +  SS+K  G +RI+    L  +LL   L      + +
Sbjct: 77  GETLARQARRLDDEAQAFSRAAVGVSSLK--GTVRISAPPVLASHLLVPRLAGMRSQWTN 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++I + +D ++    AD AIR+ +P  +  L+ R +  I    YAA  Y    +   
Sbjct: 135 IDLEVIGEVRDANLVRGEADLAIRMSRPT-APGLVARCIGEIGYGLYAANGYADRPQPEW 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                D+ NL      +P+      WL   D+  G+ R    + N   +++     G GI
Sbjct: 194 EFLGYDE-NL----SQVPQQ----RWL---DQIAGDRRF-VFRSNDLAALLHAARAGLGI 240

Query: 242 ALLPDYIVKDNPNL 255
           A LP ++    P L
Sbjct: 241 AALPRFLAAHGPEL 254


>gi|117621405|ref|YP_855688.1| DNA-binding transcriptional activator GcvA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562812|gb|ABK39760.1| glycine cleavage system transcriptional activator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 306

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 15/291 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F   AR  SFT AAE+L ++Q++IS QI  LE  +GIKLF R  R L LTE+G  
Sbjct: 9   NALKAFEAAARHLSFTRAAEELFVTQAAISHQIKALEEYLGIKLFRRKNRSLLLTEEGQG 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  +     +L   S K  G L ++         L   L +F   +PDI ++
Sbjct: 69  YFLDIKDIFTSISEATDKLLARSAK--GALTVSLQPSFAIQWLVPRLVKFSERHPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   + D     D  D AI   +      L   KL T ++    +P  L   +   +  +
Sbjct: 127 IKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLHTEYLIPVCSPLLLTGPKPLRTPDD 185

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSGIAL 243
           L +H L     L      D+  W   +D  I  P ++   + S+ + ++Q  + G G+AL
Sbjct: 186 LTRHTL-----LHDTSRRDWKAWFRQLD--IDAPNVNQGPIFSHSTMVIQAAIHGQGVAL 238

Query: 244 LPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
               + +      R++   E V+      Y    E   + GK+ AFR+++ 
Sbjct: 239 GHSVLAQPEIEAGRLICPFEQVLVSKNAFYLVCQEQQSDQGKIVAFRDWML 289


>gi|107022983|ref|YP_621310.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686774|ref|YP_840021.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893172|gb|ABF76337.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652489|gb|ABK13128.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 13/249 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F   AR G F  A ++L ++  ++  Q+  LE  +G  LF R AR + LTE G +  
Sbjct: 11  VRAFEAAARHGGFARAGDELCVTSGAVGHQVRLLEEWLGTPLFMRGARSVQLTEIGRRYF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +LE   +++++++  P  ++ +          L   L EF  L+PDI+++L+
Sbjct: 71  LEIERLMDELERASLDIRQAADSP--EVTVTAMPSFVTRWLMPRLGEFRRLHPDIEVRLL 128

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                +D S +  D AIRL   P     LI  KL++    A   P   K  R   ++ +L
Sbjct: 129 ASVPAVDFSRERVDVAIRLGVGPY--PGLIAEKLMSETFLAVGQPSICKPLR---TVDDL 183

Query: 187 DKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGSGIA 242
            +  L+   +   IP+ ++   W    D   G  R+       ++YL+ +   + G G+A
Sbjct: 184 LRATLLHDEYEARIPEQVDWMRWSRMQDVQAGPARLRQGPSFSHTYLT-LDAAIAGQGVA 242

Query: 243 LLPDYIVKD 251
           +  D +  D
Sbjct: 243 VASDVLAAD 251


>gi|332868669|ref|ZP_08438316.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332733241|gb|EGJ64436.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 288

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 115/266 (43%), Gaps = 28/266 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L++F  V   G+   A+ QLH   S+I+ +I  LE E+G  LFYR  + L LT  
Sbjct: 1   MDITQLKMFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGAPLFYREGKALKLTPS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQES---SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G     +  +  HK+     E + S      PSG LRI          L   L ++   +
Sbjct: 61  G----EIFLDYCHKILALCDEAKRSIHPDAPPSGPLRIGAIESSATTRLPNLLAKYHQRF 116

Query: 120 PDIQIQLILDNKD---IDISMDYADCAI---RLRKP-IQSSSLIQRKLVTIHMHAYAAPH 172
           P++ IQ+I        +DIS    D AI    +  P +    + Q  +V I  H+    H
Sbjct: 117 PEVSIQIITGTWKQLLVDISQHKLDGAIVAGNIEFPMLNKRGIYQEDMVLIASHSLGEIH 176

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
               C+E L  +E+    + T G      +E++  L  +  PI         + SY +I+
Sbjct: 177 ----CQEDLIGKEI---FMWTEGCPYRAALEEWLKLKNISLPI-------TSITSYATII 222

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRI 258
                GSG+AL+P  I +   NL  I
Sbjct: 223 GCVSAGSGVALVPKSIYEQYKNLAHI 248


>gi|311695526|gb|ADP98399.1| transcriptional regulator, LysR-family protein [marine bacterium
           HP15]
          Length = 299

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 1/177 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR    +A  G+   A E L + Q+++ R++  +E  +G++ F R   GL LT  
Sbjct: 1   MDWDYLRYIRALAIGGTLAKAGELLGVHQTTVLRRLDQMEESMGVQFFERSRDGLQLTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +  ++E  + +L      P GK+R+A    +   LL   L E +  +PDI
Sbjct: 61  GETAFREADRLAIEMENLERKLVGQDSAPVGKVRLAAEDAMMSALLSPILAELVREFPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +++ + DN   ++S   AD  +R     Q ++L   ++ +I    Y +  Y +  R+
Sbjct: 121 ELETLTDNDVANLSHREADLTLRPENKPQ-ATLEGERIASIESAVYGSARYCRRHRD 176


>gi|134293752|ref|YP_001117488.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136909|gb|ABO58023.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 322

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 125/289 (43%), Gaps = 13/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LTE G +
Sbjct: 5   ENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  + +    E + + ++PSGK+RI     LGQ+ +  ++  +    PD+ ++
Sbjct: 65  YFERAKSILAEFDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNPDVSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P +  +
Sbjct: 125 LTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTPQTPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCVLGSG 240
           L  H  +          E   W   ++R  GE  +     +  QVN   ++        G
Sbjct: 185 LPNHVCLRLDTPASPASE---W--RLERSDGEETVYELQPAPFQVNVPDALCVAVRASRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTF 288


>gi|241762778|ref|ZP_04760842.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241368197|gb|EER62389.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 299

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 133/297 (44%), Gaps = 22/297 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF VVAR+ + T AA +L++SQS++SRQ++ LE  +G++LF R   G+ LTE G  
Sbjct: 14  NPLKVFEVVARTNNLTLAATELNVSQSAVSRQVAVLEEYLGVQLFARERVGVRLTEVGES 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R     + ++      + +       +LR  TT  L    L   L  F   YPD++I 
Sbjct: 74  YARRIGPAFQEISAATAFITQKYSNNVIRLRTYTT--LTARWLIPRLPHFKAQYPDVEIS 131

Query: 126 LILDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++  N  +D S +  D AI L     P   ++L+   +V         P +++    P  
Sbjct: 132 ILNSNAPLDFSSEKCDLAIVLGNGTWPGAEATLLLEDIV----EPVCVPGFIEGTATPEG 187

Query: 183 IQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++   K  L++    D  P+      WL     P        +  +S +   Q  + G G
Sbjct: 188 LR--GKRLLVSRYRKDDWPR------WLEYAGMPGMFETAEKMVFSSSILTWQAAMDGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA+   +++  +     LVR     +      Y   P   +++ K+ AF++++  +A
Sbjct: 240 IAIGQQHMLDADFQAGRLVRPFARQLRTGQGQYIVTPALQRHSDKIVAFKDWLMREA 296


>gi|114762392|ref|ZP_01441850.1| transcriptional regulator [Pelagibaca bermudensis HTCC2601]
 gi|114545010|gb|EAU48014.1| transcriptional regulator [Roseovarius sp. HTCC2601]
          Length = 309

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 122/293 (41%), Gaps = 21/293 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F        F  AA +L +S S++S+ I+ LE  + ++L  R  R    T +G   +
Sbjct: 8   MHLFVAAVEEQGFAAAARRLAISPSTVSKAINRLEAALSVRLVDRDTRHFVATSEGLTFY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    ++  +  +  S ++  GKLR++ +    +  +   + EF   YP+I I   
Sbjct: 68  HGCCRAIEAMQDAEASVSGSKLQAKGKLRVSVSASTAEARIGPMMHEFHAAYPEIDIAFH 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N  +D      D  I    P++  + + R+L    +   AAP YL+    P    +L 
Sbjct: 128 LRNGYVDPIEAGVDITISHEPPVR-DTFVARRLCYTPLLVCAAPSYLERRGRPQRPTDLR 186

Query: 188 KHNLITFGDLIPKCMEDFN-WL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            HN I          E FN W    A   RP  +P     + +    + Q  + G GIA 
Sbjct: 187 DHNCIL------STREVFNTWQFEEAGELRP--QPVHGAFRASQGSMLRQLALSGVGIAN 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
           L  Y V+D+    R++E  + P F       +Y  Y +      +++ F +F+
Sbjct: 239 LMTYQVRDDLRAGRLVE--LLPRFRPTQGIPLYAVYHDRRNLNARIRCFVDFL 289


>gi|91790922|ref|YP_551873.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91700802|gb|ABE46975.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 301

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 134/298 (44%), Gaps = 14/298 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  +A   +FT AAE++H++QS++S QI  LE E+G  LF R  + + +TEQG    
Sbjct: 6   LRYFVALAECLNFTRAAERVHVTQSTLSHQIRQLEEEIGELLFERVGKRVLITEQGELFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI--- 124
              ++   +++     L+ESS   +GKLRI +T    Q  +   +   LL +P +++   
Sbjct: 66  GYAAKALKEVDQGLGALKESSQGLTGKLRIGSTHTFNQGFIPECIATLLLRHPTVKVVAN 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +   D+    ++    D  I  R P     L    L    M    AP +    R+ + + 
Sbjct: 126 EFTADDIGDRLASGTLDLGISYR-PGTVGDLWFEPLYNEQMVLVVAPQHPLAGRKRIRLV 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS---YLSIMQYCVLGSGI 241
           EL +  L+    L+P+       L    R      +  +++N+    L++++   +G   
Sbjct: 185 ELHRQPLV----LLPETFATRTMLDECFRACDAEPLVVVEMNTLAPMLALVERTQIG--- 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A++ +  V++   L  I  +  TP  T    +   +  T  ++AF + +   AR  + 
Sbjct: 238 AIVSENAVRERSALCAIPLESPTPMRTPGILWKRDVDKTAPMRAFASIVRAIARSSRL 295


>gi|84516526|ref|ZP_01003885.1| transcriptional regulator, LysR family [Loktanella vestfoldensis
           SKA53]
 gi|84509562|gb|EAQ06020.1| transcriptional regulator, LysR family [Loktanella vestfoldensis
           SKA53]
          Length = 270

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 105/217 (48%), Gaps = 11/217 (5%)

Query: 41  LETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATT 100
           +E  +G++LF R  R LT TEQG   +R  +E+   +ET + ++   +    G L +A  
Sbjct: 1   MEEHLGVRLFQRTTRNLTPTEQGQSFYRGATEILEAVETAEAKIVNLTENLKGSLYVAAP 60

Query: 101 IDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160
           + +G+ L+   +  FL  YP + ++L L ++ +D++ +  D A  L +P+ S+  I RK+
Sbjct: 61  LGVGRRLIAPQVPIFLKDYPGVSLRLRLSDRKVDLTTEGLDLAFFLGQPVDSNLRI-RKI 119

Query: 161 VTIHMHAYAAPHYLKNCREPLSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP 218
             +     A+P Y+     P +  +L   +H  +      P   E F WL +   P G  
Sbjct: 120 ADVRRILCASPEYIAQRGMPENGDDLVSGRHECLNL--RFPGAKE-FQWLLST--PTGPR 174

Query: 219 RISC---LQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252
           R       + +    +  + + G+G+A+ P + + ++
Sbjct: 175 RFRVSGRYESDDGDVLTDWAIAGNGVAMKPVFEIAEH 211


>gi|124383518|ref|YP_001027364.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126448703|ref|YP_001082329.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|124291538|gb|ABN00807.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126241573|gb|ABO04666.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
          Length = 330

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 128/256 (50%), Gaps = 16/256 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLH----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L+    R+ SE++   E      Q+      G++R++     GQ ++   L  F  L
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQ----GRVRLSVPSGYGQLVMSNWLIAFKRL 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           YP I + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P +    
Sbjct: 117 YPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQ--NLVARDMGAVRYVACASPGFAATH 174

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCV 236
             P  + +L    +IT   ++ + +    +L      +  EP    L   ++L + Q  +
Sbjct: 175 GMPTELGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQAIL 230

Query: 237 LGSGIALLPDYIVKDN 252
            G G+ ++PDY+V D+
Sbjct: 231 AGLGVGIVPDYVVHDD 246


>gi|167561217|ref|ZP_02354133.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 293

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 117/260 (45%), Gaps = 14/260 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   AR  SF+ A E+LH++  +ISRQI+  E  +G  +F+R  + + LT++G +  
Sbjct: 11  LKAFEAAARHESFSAAGEELHVTHGAISRQIAAFEAWLGKPVFHRRGKRVKLTDEGRRYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  +     +L+E+    +  LRI          L   L  F    P+++++L 
Sbjct: 71  ATVEAAFDSIARATEQLRETGA--ARVLRINALPTFAMKWLLPRLSRFQREMPNVELKLS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQEL 186
             N  +  S+D  D AIR R P +  +    + +   M    +P  LK  R P+ S  +L
Sbjct: 129 TSNAPLG-SLDGFDVAIR-RGPGRWPNCASGRFLDESMIPVCSPALLK--RTPIASADDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H L+   D  P    +  W A    P+ G  + S    + +   +Q  V G G+AL P
Sbjct: 185 ARHVLL-HSDTRPDAWRE--WFAAAGTPMKGRKKQS---FDHFYLALQAAVDGLGVALGP 238

Query: 246 DYIVKDNPNLVRIMEDVITP 265
             ++ D     R++  +  P
Sbjct: 239 LPLIADELASGRLVTPLPGP 258


>gi|153010111|ref|YP_001371325.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561999|gb|ABS15496.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 302

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 119/255 (46%), Gaps = 11/255 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+F   +L+ F  VA  GS T AA++L +SQSS++  +  LET++ ++LF RH RGLT+T
Sbjct: 1   MAFTLRQLQYFIAVAEQGSVTRAAQKLSISQSSVTEAVKELETDLNVELFERHPRGLTVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +  R  +++   +   +    ++ ++  GKL +  T  +   +L   L  +   +P
Sbjct: 61  HNGHQFLRYATKILADVSDARRSFTDNRIQEKGKLNLGVTSLVAGYVLSDLLARYRRAFP 120

Query: 121 DIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP--HYLK 175
            ++I  I DN    +  +     D A+ +   ++    +  +++    +    P  H L 
Sbjct: 121 GVEISAIEDNGSYLEHLLVGGELDVAVMVISNLRDRMALHAEILETSPYRLWLPLGHPLV 180

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
              + +S+ ++ K  LI     + +  E+   L      +G       +  S  ++    
Sbjct: 181 PT-DSISVSDIAKEPLIML--TVDEIEENTGKLLAA---LGARPHVAFRTRSVEAVRSLV 234

Query: 236 VLGSGIALLPDYIVK 250
             G+GIALLPD + +
Sbjct: 235 ATGAGIALLPDLVYR 249


>gi|16262653|ref|NP_435446.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|307309117|ref|ZP_07588794.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|14523273|gb|AAK64858.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|306900431|gb|EFN31046.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 299

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 14/292 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  LR F + A   +F   A +L ++ ++++R I+ LE E+G++LF R  R ++LT  G
Sbjct: 3   DYKALRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEAELGVQLFVRTTRQVSLTTDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +            +E  + E+  +     G+LRI+     G+ +L   L  F   YP + 
Sbjct: 63  AIFAAQLQPAVKTIEDARREVMNAHKADEGRLRISAPTWFGKAVLPPILSAFKERYPKMS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP-HYLKNCREPLS 182
            ++ L +  ++I  D  D AIR+         I RK+  +     AAP     + + P  
Sbjct: 123 FEISLSDGLVNIVDDDYDLAIRISSQPSDKFTIWRKIRVVPRILVAAPGSRFVDMQHP-- 180

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             EL   + + + GD         NW L+     I          N+   +      G+G
Sbjct: 181 -NELTPDDCLAYSGD-----SRRENWVLSDGGSSITISAGRAFSANNGEVLADIAADGAG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +A+LP + + ++     LV + +    P   +   YP       ++ +F  F
Sbjct: 235 VAMLPGFHIFEHLRTGRLVHVFKGWAPPDLWLTLYYPPYQALPPRIASFSKF 286


>gi|270263906|ref|ZP_06192174.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042099|gb|EFA15195.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 286

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 127/271 (46%), Gaps = 14/271 (5%)

Query: 23  AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82
           AA++L ++ S++S+ I  LE E+GI+L  R  R L+LTE G   +     + H  E  Q 
Sbjct: 2   AAKELGITTSAVSQHIRQLENELGIQLLLRSTRSLSLTEAGQCFYEDCVLMIHAAERGQQ 61

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
            +     + +G+LR+AT+ +   + L   L+ FL  +P I ++L + ++ ID+     D 
Sbjct: 62  RIAALRGELAGELRVATSTEFATHYLVPALQSFLDEHPRITLRLEIHDEKIDLIGQRIDL 121

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202
           AIR    +  SS +  +L        A+P YL +   P S Q L +H  +TF    P   
Sbjct: 122 AIR-GGVLADSSYVSTRLARFREVLCASPAYLADHGVPESPQALTRHQWVTF---TPLGN 177

Query: 203 EDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVK-----DNPNLV 256
             F  L   +      R++  L  N+ +++ +  + G GI  + ++ V       + +LV
Sbjct: 178 PQFVRLNHANGDEHRLRMTGRLFTNNGMAMKELALAGKGI--IRNFFVNVERELRSGDLV 235

Query: 257 RIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            ++ +   P    Y   P   +++  LK  R
Sbjct: 236 EVLPEWRLPEINCYAIMPR--RDSQPLKVRR 264


>gi|225574174|ref|ZP_03782784.1| hypothetical protein RUMHYD_02238 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038607|gb|EEG48853.1| hypothetical protein RUMHYD_02238 [Blautia hydrogenotrophica DSM
           10507]
          Length = 286

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 116/259 (44%), Gaps = 29/259 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           K   F      GSFT AAE L+ SQS ISR I  LET+  + L  R   G+ LT  G+KL
Sbjct: 5   KYMAFVKAVEYGSFTKAAEILNYSQSGISRMIHDLETDWKVVLLERRKSGIKLTSDGTKL 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  + E  Q+E+ E +   SG +RI T   +  + L   ++EF   YP+I  +L
Sbjct: 65  LPYIQKICAEYEKLQMEVDELNGLQSGLIRIGTFSSVATHWLPNIIREFQRAYPNIDYEL 124

Query: 127 IL-DNKDID--ISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKN--- 176
           +L D  +I+  IS    DC   LR P     ++  L Q +L+ I    +A     K    
Sbjct: 125 LLGDYTEIEQWISDGRVDCGF-LRLPTCSDFETIFLEQDRLLAILPENHALQSLEKIPVT 183

Query: 177 --CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
             C EP  +  L+K       ++  +C                P +     + Y +IM  
Sbjct: 184 ALCSEPFML--LEKGEKAEISEIFERCGLT-------------PNVHFTTWDDY-AIMSM 227

Query: 235 CVLGSGIALLPDYIVKDNP 253
              G GI++LP+ I++  P
Sbjct: 228 VESGLGISILPELILRRVP 246


>gi|152988689|ref|YP_001346318.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963847|gb|ABR85872.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 303

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 131/290 (45%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++GS + AA +L +   ++SR++  LE ++ ++L  R  RG  LTE 
Sbjct: 1   MDLNALRMFVGVVQAGSLSAAAGRLGIPLPTLSRRVRDLERQLAVQLLERSVRGTRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+   S     L   +  L     +  G+LR+  ++  G       L  F   YP+I
Sbjct: 61  GMRLYENASRGVEMLHEAEQALVSDQARLKGRLRL--SLPPGFEPWWELLGLFQRRYPEI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q+    + ID+  D  D A+R+   +   +++ R+L+       A+P  L+  RE L+
Sbjct: 119 RVQVFTTERRIDLIEDGVDVALRV-GAVAHETMVARRLLAYRHVLVASPRLLE--REGLA 175

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + LD       G   P    +  W +   +P+ +PR+  L  N Y  +    +    +A
Sbjct: 176 -ETLDDLRRFPAGMWSPGGSGEGAW-SLGGQPV-KPRV-VLATNDYAHLRARALAAELVA 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LP ++         LV ++     P   ++  YP     +  ++ + +F
Sbjct: 232 ELPPFMAAAAVRAGELVELLPRSPLPEQEIHLLYPSHRHPSTLVRTYLDF 281


>gi|317054584|ref|YP_004118609.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952579|gb|ADU72053.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 297

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 133/281 (47%), Gaps = 13/281 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + +  F  VA +GSF+ AA Q    QS+IS+QI+ LE E+G+ L  R  R + LT
Sbjct: 1   MNNKLNAIATFIRVAEAGSFSAAARQTGSKQSAISQQIAALEAELGVVLLRRTTRAMALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++  +    +   ++  +++L+ +  +  G L I     +GQ LL  +L  F   +P
Sbjct: 61  EAGAQYLQQIRPLMEAMDDIEVQLRPAHQQLQGNLHIQLPSGIGQLLLP-HLLRFQQEHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            I++ + LD++  ++  +  D A+RL  +P   + +  R+L  +     A+P  L +  +
Sbjct: 120 GIRLDVALDDRLAEVISEGVDVALRLAEQP--PAHMAARQLARVTTVLVASPALLGD--Q 175

Query: 180 PL-SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           PL  + +L     + F  +     +    L + +  +  P  +  + N+   +MQ    G
Sbjct: 176 PLREVAQLRDFPHVRFAGI---AKDAPLTLMSGEETLSIPVNTVFRANTSQVLMQAITAG 232

Query: 239 SGIA--LLP-DYIVKDNPNLVRIMEDVITPSFTVYFCYPEA 276
            GI    LP          LV+++ +   P   +Y  +P+A
Sbjct: 233 LGIGGLQLPLGAAALSAGTLVQVLPEYRLPDRYLYAVFPDA 273


>gi|170691419|ref|ZP_02882584.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143624|gb|EDT11787.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 306

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 12/239 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR G  T AA +LH++ S++S+QI  LE  +G+ LF R ARGL  T++G +L+
Sbjct: 10  LRCFEAVARLGGVTQAARELHVTHSAVSQQIKVLEEAMGVALFVREARGLRPTDEG-RLY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  E+   L       +    +P   +L IAT     Q+ L   L +F   +P  +++L
Sbjct: 69  AL--EIRAALRDITQATRRVLARPHDSELVIATLPSFAQHWLVPRLPDFRDAHPYYRVRL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY--LKNCREPLSIQ 184
           +   +  D+    +D  IR+ +      +  +KL    M   AAPH+      R P++ +
Sbjct: 127 VTSLQLEDLRHGASDVGIRMGQG-HWPDVAHQKLFDDEMIVVAAPHFALAPGGRLPVTAE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           E+    LI+  D       D+   A V +P    R+  L  N    ++   +LG G+AL
Sbjct: 186 EVIACPLISSPD---APWADWCEAAKVAQPDAA-RV-VLSANDSNVVIGAVLLGQGVAL 239


>gi|89072991|ref|ZP_01159538.1| hypothetical transcriptional regulator, LysR family protein
           [Photobacterium sp. SKA34]
 gi|89051209|gb|EAR56665.1| hypothetical transcriptional regulator, LysR family protein
           [Photobacterium sp. SKA34]
          Length = 304

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 122/289 (42%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  SFT AA+ L +S++ +S+ +  LE  +G++L  R  R   LTE G   
Sbjct: 7   QMVVFNALTKQKSFTRAAQLLEISRTQVSKLVQQLEERLGVQLVQRTTRSFALTESGRIF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    V  ++   + EL        G LR+        N +   + EF    P + ++L
Sbjct: 67  AKHCETVVDEINEAESELLIFGDSQQGSLRVGIAQSFASNHVAPYINEFHEQNPLVDLEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I           + R L        A+P YL     P    +L
Sbjct: 127 SLFDHRVDLISEQLDLWIGFMDS-PPEGFVARHLTNCDFVLVASPDYLAKHGVPYHPDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN IT+     +  +D  W  ++       +++   +V+S  +I    + G+GI  L 
Sbjct: 186 QHHNCITY---FSRERKDNIWNFSLGNEEQHVKVTGNYRVDSADAIRDATISGNGIGYLA 242

Query: 246 DYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y++KD      L+R+M +  +T    +Y  YP       K+  F  FI
Sbjct: 243 TYLLKDEIRQGKLIRLMPNWQLTQHMPLYAVYPRHKYLPSKVNLFIEFI 291


>gi|304404667|ref|ZP_07386328.1| transcriptional regulator, LysR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304346474|gb|EFM12307.1| transcriptional regulator, LysR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 308

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 20/302 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  K+ +F  +    S T  A+   +  ++ISR I  LE E+ I+LF+R  R +  TE 
Sbjct: 1   MDTKKIEIFVDLMHKRSITAVADGRDVDAATISRAIRSLEEELNIQLFHRTTRRIEPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     + H+    +    E + +P G LRI+  +   ++ +   L  F   YPD+
Sbjct: 61  GFIFYENIEPLLHEFRQAKQMASELNRQPQGVLRISCPVSFAEHNITPLLPAFSKRYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQ---SSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           Q +LIL +  +D+  ++ D AIR+  P+Q   + S++  KL  +     A+  ++     
Sbjct: 121 QYELILTDTPLDLVTEHIDLAIRV-GPLQLHANKSIVTHKLADMVTRVCASTAFIHEHGR 179

Query: 180 PLSIQELDKHN--LITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYC 235
           P + +EL+ +   L+  G  +        W+ T    R I       L+ ++ +++ Q  
Sbjct: 180 PSTPEELEHYPCLLLHLGGFLRN-----RWVFTDPSGRKIEVQLKELLRTSNAMALKQCA 234

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIM-EDVITPSF---TVYFCYPEALKNTGKLKAFRN 288
           +   GI LL  +I         LV +  E  +T +    + +  YP   +   K+ AF  
Sbjct: 235 MQDMGITLLAMWIAGKELREGTLVDLFPEHTVTSAIEEASAWILYPARSRVPRKVTAFVQ 294

Query: 289 FI 290
           +I
Sbjct: 295 YI 296


>gi|239834742|ref|ZP_04683070.1| DNA-binding transcriptional activator GcvA [Ochrobactrum
           intermedium LMG 3301]
 gi|239822805|gb|EEQ94374.1| DNA-binding transcriptional activator GcvA [Ochrobactrum
           intermedium LMG 3301]
          Length = 307

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 9/246 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF   AR  SFT AAE+L++SQ ++S+ I  LE   G+KLF R    L LT +G +L+R 
Sbjct: 16  VFEAAARRLSFTAAAEELNVSQPAVSKTIKLLEEATGLKLFRRERSRLELTAEGQRLYRE 75

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           T E +  L      +++   +    +R++ +    Q  L   LK F   +PD+ +++   
Sbjct: 76  TQEAFDHLHMVISSMRKKHSR--DIIRVSFSASFVQLWLLPRLKGFKEKHPDVALRIEES 133

Query: 130 NK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ D D+  +  D + RL +  +   ++    VT  +    +P YLK         +L  
Sbjct: 134 SRDDQDLLEEDIDVSARLGRG-KWPGILAWPFVTEEVWPLCSPAYLKERGAIREASDLLN 192

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           H L+ F +   +      W   ++R  +  PRI         LS ++  V G G+AL   
Sbjct: 193 HTLLHFEE---RHRSRLGWREWLERSGVPNPRIEQDFVFTDALSSIEAAVQGQGVALGWK 249

Query: 247 YIVKDN 252
           ++V D+
Sbjct: 250 HLVHDH 255


>gi|323499798|ref|ZP_08104757.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315039|gb|EGA68091.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 304

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 22/297 (7%)

Query: 6   DKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL   +V   VA++ SFT  AE+L +S+  ++R +   E  +G +L  R  R ++LT  
Sbjct: 2   DKLTAAKVLLDVAQTESFTATAERLDMSRPMVTRYVEAAENWLGSRLLQRTTRKVSLTSA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPS----GKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L     E+   ++  Q +  E S+ P+    G +R++ ++  G + L   L++F   
Sbjct: 62  GEQL---LDELQSWVD--QAQQMEESLMPTKAITGFVRLSVSMSFGFSQLMPALEKFRQR 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP I+I +   ++ +D+  +  D AIR      + +LI R     +    A+P YL    
Sbjct: 117 YPAIKIDIDAQDRAVDMVAERIDLAIRTTND-PNPALIGRPFSVCYSKLVASPDYLARSP 175

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
                Q+L  H  + +     K      W         E  ++C +  N    ++   + 
Sbjct: 176 SITQPQDLTHHACLGY-----KNFGRHVWQLQQQNQHQEIEVNCDITANEATVLLHGSLA 230

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G GI++ PDY+  +      LV ++ +    +  +Y  YP     +  ++A  +F+ 
Sbjct: 231 GLGISMQPDYLADEWIKRGKLVWLLPEWQLMTLQMYLLYPSRKHLSPPVRAMIDFLL 287


>gi|293604724|ref|ZP_06687124.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292816893|gb|EFF75974.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 304

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 128/302 (42%), Gaps = 25/302 (8%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F   AR GSFT AA+ L ++Q +ISR IS LE   G  L +R+A GLTLTE G KL
Sbjct: 3   ELHAFVAAARLGSFTQAAQTLCVTQGAISRAISRLEQHFGQPLMHRNAHGLTLTELGQKL 62

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +         +E    EL+    +   +L ++T   L    L  +L +F   +PDIQ   
Sbjct: 63  YDGAHSPLSAIEALSAELRADDRRL--RLTLSTVPTLASAWLVPHLPDFHRRHPDIQPNF 120

Query: 127 ILDNKDIDISMDYADCAIRLRKP-----IQSSSLIQRKLVTI-HMHAYAAPHYLKNCREP 180
               +  D S    D +I    P      Q+  +I R++V I H    AA         P
Sbjct: 121 AAYRRSEDFSGATPDASILSGTPEQWPGWQADYVIGREVVVICHPDRLAARQAQGLWSTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY--LSIMQYCVLG 238
              Q L    L+   +      + FN         G PR + +    +  +SI+   V+ 
Sbjct: 181 ---QGLLGEPLLYHTNGQDNWAQWFN-------AAGVPRHAVMLSKGFDQVSILIRAVMA 230

Query: 239 S-GIALLPDYIVKDNPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             G+A+L   +V+D     R+        I  +   Y C P   ++   L+ FR ++   
Sbjct: 231 DMGVAVLQRCLVRDELQSGRVAAPFPDLPIRLTRGYYLCAPAQRRDHYALECFRQWLLQT 290

Query: 294 AR 295
           A+
Sbjct: 291 AQ 292


>gi|15601744|ref|NP_233375.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121587011|ref|ZP_01676789.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121726364|ref|ZP_01679638.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|153818161|ref|ZP_01970828.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153821018|ref|ZP_01973685.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227812556|ref|YP_002812566.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229505874|ref|ZP_04395383.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229510272|ref|ZP_04399752.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229517597|ref|ZP_04407042.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229605407|ref|YP_002876111.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254850154|ref|ZP_05239504.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746273|ref|ZP_05420220.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262158156|ref|ZP_06029274.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|298499763|ref|ZP_07009569.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9658433|gb|AAF96887.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121548746|gb|EAX58793.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121631112|gb|EAX63487.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|126511267|gb|EAZ73861.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126521392|gb|EAZ78615.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227011698|gb|ACP07909.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229345633|gb|EEO10606.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229352717|gb|EEO17657.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229356225|gb|EEO21143.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229371893|gb|ACQ62315.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254845859|gb|EET24273.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736027|gb|EET91425.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262030034|gb|EEY48680.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|297541744|gb|EFH77795.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 308

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 11/254 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE G   H+ 
Sbjct: 9   LFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTESGVLYHQA 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP++   L L+
Sbjct: 69  CLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPEVVPYLYLN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   +++    D  IR  + +  SSLI RKL T      A+P YL     P + Q+L +H
Sbjct: 129 DNISNLAESGLDVVIRYGE-LADSSLISRKLATSRRVLCASPAYLARKGIPKTPQDLAQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGIALLP 245
           + +    ++    E   W    +    + ++  +   S+      I Q+ + G GIAL  
Sbjct: 188 DCLA---MVRSNEEMKTWHFQENE---QHKVITVVPKSFADDGEVIRQWALAGMGIALKS 241

Query: 246 DYIVKDNPNLVRIM 259
              V+D+ N  R++
Sbjct: 242 ILDVQDDLNQQRLV 255


>gi|311108886|ref|YP_003981739.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763575|gb|ADP19024.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           181 [Achromobacter xylosoxidans A8]
          Length = 301

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR F   AR+G F+ AA   H+SQS+++  +  LE ++G++LF RH  G+TLT +G   
Sbjct: 9   QLRYFAAAARTGRFSMAAADEHVSQSAVTNAVLALEAQLGVRLFDRHPHGVTLTPEGHNF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H+   EV   L+    E         G +RIA +  +    L   L  F   YPD+++ L
Sbjct: 69  HQRAREVLDSLDDALREPGFQRYALRGAVRIAASYTVLGYFLPDLLARFRRRYPDVELDL 128

Query: 127 I-LDNKDIDISM 137
           + LD  +I+ ++
Sbjct: 129 VDLDRPEIEAAV 140


>gi|169832129|ref|YP_001718111.1| LysR family transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638973|gb|ACA60479.1| transcriptional regulator, LysR family [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 297

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 69/120 (57%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LRVF+ VAR  S++ AAE+L LSQ ++SRQIS LE  +G++LF R  R + LT+ G  L
Sbjct: 9   QLRVFHAVARHLSYSRAAEELALSQPAVSRQISNLEGLLGLRLFDRRGRRVQLTDAGRSL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++ H     +  +        G++R+        + L+  LK+F   YP+I+++L
Sbjct: 69  YEYADQIVHLAGEARRAMDGLRNLERGQVRLGLAASAAGHALRSTLKQFGAFYPEIEVRL 128


>gi|291616231|ref|YP_003518973.1| YhjC [Pantoea ananatis LMG 20103]
 gi|291151261|gb|ADD75845.1| YhjC [Pantoea ananatis LMG 20103]
          Length = 295

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 6/175 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + +R F  VA +GSF+ AA QL++ QS++S+QI+ LE E+G+ L +R  R   LT
Sbjct: 1   MNNKLNAIRTFLRVAEAGSFSEAARQLNIKQSAVSQQIAALEAELGVVLLHRTTRVRVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            QG    R    +   ++  + +L  ++ +  GK+ +     LG+  L  +L       P
Sbjct: 61  AQGEYYRRKMQPILEAMQAVENQLSPAAQQWQGKINVQLPGGLGRLFLP-HLLGLQKANP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI--QRKLVTIHMHAYAAPHY 173
            + + L LD++  D++ +  D A RL    Q +  +   RK+  I    +A+P +
Sbjct: 120 GLHLTLSLDDRISDLAREGVDVAFRL---TQDAPEVYPARKIARIETPLFASPDF 171


>gi|170740365|ref|YP_001769020.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194639|gb|ACA16586.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 297

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 120/255 (47%), Gaps = 20/255 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L VFY  A   SF  AAE+L+ +Q ++S++I+ LE   G++LF R AR + LT +G
Sbjct: 3   DLRSLEVFYWTATLCSFRQAAERLNTTQPAVSQRIAALEETFGVRLFERRARSVCLTAKG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L  V +E + +L T  +    S     G LR+  +  +    L   ++     YP + 
Sbjct: 63  RDLL-VYAERFLRLRTEMMGAIASPETMRGVLRLGVSETIVHTWLMRFIEAMSQAYPGVT 121

Query: 124 IQLILDNKDIDISMDYADCAIR-------LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           + L      +DIS +  D  IR       L  PI   SL+   L    +   AAP  L  
Sbjct: 122 VDL-----SVDISPNMRDALIRRELDLDFLVGPITMPSLVNLPLCRYAVAWIAAPQ-LDL 175

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYC 235
               +++ +L +H +IT+       ++  + LA  + P   PR   L  N+ LS I++  
Sbjct: 176 GEGEVALTDLVRHPIITYPKNTNPYVQLHDLLARSNLP--PPR---LYSNASLSTIVRMT 230

Query: 236 VLGSGIALLPDYIVK 250
           + G GI ++P  IV+
Sbjct: 231 LEGIGICVIPPDIVR 245


>gi|121603924|ref|YP_981253.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120592893|gb|ABM36332.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 311

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 138/294 (46%), Gaps = 20/294 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F ++AR GSF+  A +L ++  ++S+++S +E  + ++L  R  R ++LT +G   
Sbjct: 10  EMAFFSMLARLGSFSATARELGITTPAVSKRLSQMEARLRVQLLNRTTRRISLTPEGETY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   ++  +  +  ++  P G LR+  T+  G++ +   + EF+ L+  +Q+QL
Sbjct: 70  LAHARRILADIDDMEQMVSGAASAPKGLLRVNATLGFGRSHIAPLISEFIKLHAQVQVQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  +R  + +  + ++ R L        A P YL +   P    +L
Sbjct: 130 QLSVDPPPLAEDAFDVCVRFGE-LPDTRVLARYLAPNRRLLCATPAYLASHGTPRVPNDL 188

Query: 187 DKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSI------MQYCVLGS 239
             HN I     I +  E +  W  +  +     R   ++V   LS       + + + G 
Sbjct: 189 AHHNCIG----IRQGGEAYGTWRLSQGK-----RTETVKVRGNLSTNDGEIAVNWALDGH 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  ++ +     +  L++++E+   P   ++  YP+  + + +++AF +F+
Sbjct: 240 GILMRAEWDIAKYLRSGRLLQVLENYRLPPADIHAVYPQRHQTSVRVRAFVDFL 293


>gi|134292360|ref|YP_001116096.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135517|gb|ABO56631.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 327

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 1/179 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA QL+ +Q ++SR++  LE  +G++L  R    + LT 
Sbjct: 26  GYRFELMETFVRIVEAGSLSAAAAQLYTTQPTVSRRLQALERSLGMRLLQRTTHAMRLTV 85

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      E+       + +L+ +  +P G LR+A     GQ      L +FL  YP 
Sbjct: 86  DGERCFTRAKELLAGWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVAPLAQFLRDYPR 145

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++ +L ++  D      DCAI++ +P     ++  +L  +     AAP  L     P
Sbjct: 146 VSVEWLLQDEVRDFVGSGIDCAIQVGEP-SDPGVVAIRLTKVPRFVVAAPSVLDRAAVP 203


>gi|330819608|ref|YP_004348470.1| Regulatory protein [Burkholderia gladioli BSR3]
 gi|327371603|gb|AEA62958.1| Regulatory protein [Burkholderia gladioli BSR3]
          Length = 301

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 132/302 (43%), Gaps = 19/302 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D   L  F  VAR+  F  AA+   +S S +S  +  LET +G++L  R  R +  T
Sbjct: 1   MSADLSDLHAFVAVARANGFRGAAQATGISASGLSEAVRRLETRLGVRLLNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    +    ++++    +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGARLLSRLAPALDEVQSALDVVNGFRDRPAGTLRLNVPLSAARLVLPAIVPRFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSL-------IQRKLVTIHMHAYAAPHY 173
           +I++++  D   +D+     D  IR  + ++   +       +QR      M   A+P Y
Sbjct: 121 EIRLEVAADESFVDVLAVGCDAGIRYEERLEQDMIAVPIGPRVQR------MALGASPAY 174

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSI- 231
           L     P   +EL  H  I  G    +    ++++   ++   EP    L ++ +   + 
Sbjct: 175 LDRRGRPAHPRELLHHECI-LGRFPGRATVPWDFVRDGEKLRIEPAGQLLVELGAAFDLG 233

Query: 232 MQYCVLGSGIA-LLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +   + G+G+  L  D++    D+  L R++E         +  YP        L+AF +
Sbjct: 234 VDAAIAGTGLVYLFEDWLRPHFDSGALERVLEPWWDSFPGPFLYYPGRRLVPAPLRAFID 293

Query: 289 FI 290
           FI
Sbjct: 294 FI 295


>gi|221196837|ref|ZP_03569884.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203507|ref|ZP_03576526.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221177441|gb|EEE09869.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183391|gb|EEE15791.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 312

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 131/302 (43%), Gaps = 30/302 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR G F  AAE+L+++ ++IS QI  LE  +G+KLF R  R + LTE G+ L 
Sbjct: 10  LRAFEAAARRGGFKAAAEELNVTPTAISHQIRQLEDWLGVKLFERRTRSVRLTEGGTALF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLR-IATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +   E     ++ +     GK+  + +T+      L      F   YPD  ++L
Sbjct: 70  PALRDGFDSFERA---IETTRNLDGGKVATLTSTVAFTAKCLAARAGGFRAAYPDWTLRL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI--- 183
              N  +D+    AD +IR   P   + L+   L           H+   CR  L+I   
Sbjct: 127 DATNAIVDLDRS-ADASIRY-GPGYYAGLVSELLFK--------DHFAPVCRPHLAIATA 176

Query: 184 QELDKHNLITF--GDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           Q+L +  LI F  G  +   P+ +   +WL        +P  + L+ N  +  MQ  + G
Sbjct: 177 QDLQRATLIHFDWGAPVRDDPRAITWAHWLDAARMSAIDPN-AGLRFNDEIHAMQATLAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFL 292
            G+ L+   +V D   N  LV+   D+   SF    VY     +   TG LK +    F 
Sbjct: 236 QGVGLISLTLVADELANGTLVQPF-DLALESFQYDLVYSPRSASRHATGILKNWVRGEFA 294

Query: 293 KA 294
            A
Sbjct: 295 DA 296


>gi|239817269|ref|YP_002946179.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239803846|gb|ACS20913.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 290

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 21/290 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  V R+   T AA+ LH++  ++S+Q+  LE  +G +LF +  R + LT  G +L 
Sbjct: 11  LRVFDAVCRAKGITRAAQVLHVTPGAVSQQVKQLEVGLGAQLFQKSGREIELTAVGKRLA 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+ + +L     ++ +  ++   +LR+  T  L    L   L+ F   +PDI +++ 
Sbjct: 71  HRVSDAFDRLNDALNDVVD--IQLDKRLRLKVTPSLAIRWLVPRLRGFYAQHPDIDLEIS 128

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                 DI ++ ADCAIR        ++   L   + + +      APH  ++ + P   
Sbjct: 129 TIAMADDIRLEGADCAIRHGMGEWADVELDHLFDDEFLPV-----CAPHLARHLKAP--- 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L + NL+    + P+      W ++ +  +  PR+  + + +     Q    G GIA+
Sbjct: 181 QDLLQANLL-HSMMRPEAWS--LWFSSAEL-VDSPRLHGITLANAALCYQAAADGLGIAI 236

Query: 244 LPDYIVKDNPNLVR--IMEDVITPSFTVYFCYPEALKNT-GKLKAFRNFI 290
                V D+    R  I  D +  + + Y+   + LK     +K FR++I
Sbjct: 237 AQRAYVDDDLRSGRLVIAVDHVATTESGYYLVCDPLKAAEAPVKLFRDWI 286


>gi|33597522|ref|NP_885165.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33573950|emb|CAE38268.1| probable LysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 304

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 132/284 (46%), Gaps = 24/284 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AAEQL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 5   MKTTLDELQAFVAVVDTGSITAAAEQLGLTVSAASRTLGRLEEKLQTTLVRRTTRRLELT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+   +    +   ++  + ++    ++P+G+LR+        ++L   +  F   YP
Sbjct: 65  EEGAAFLQHARAILASVDEAEEQMAARRMRPAGRLRVDAATPFMLHVLVPLIAGFHARYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  +   +D+     D A R+   ++ S+L  R + T  +   A+P YL+    P
Sbjct: 125 EVELELNSNEGIVDLIEKRTDVAFRI-GVLKDSTLHARAVGTSRLRVLASPAYLERRGAP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV------NSYLSIMQY 234
               +L +H L+ F    P+ + D  W      P+ +   + L++      +S  ++   
Sbjct: 184 TRTAQLAQHALLGFTQ--PETLND--W------PLRDADGTVLRIRPTIASSSGETLRHM 233

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIME-------DVITPSFTVYF 271
            + G GI  L D++  ++     +++       DV  P   VY+
Sbjct: 234 ALAGLGIVCLSDFMTGEDRRAGALVQLFARQTLDVRQPVNAVYY 277


>gi|313107722|ref|ZP_07793904.1| LOW QUALITY PROTEIN: putative transcriptional regulator, LysR
           family [Pseudomonas aeruginosa 39016]
 gi|310880406|gb|EFQ39000.1| LOW QUALITY PROTEIN: putative transcriptional regulator, LysR
           family [Pseudomonas aeruginosa 39016]
          Length = 309

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 1/192 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +
Sbjct: 10  DEVATLLALAEHGSFAAAGRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++
Sbjct: 70  LASRFRQAVDLLDEAEHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                + +DI  +  D AIR+ + +  S L+ R+L        AAP YL+    P    +
Sbjct: 130 TDYSERFVDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLERHGVPRIPAD 188

Query: 186 LDKHNLITFGDL 197
           L  HN + F  L
Sbjct: 189 LAAHNCLGFSGL 200


>gi|293608162|ref|ZP_06690465.1| transcriptional regulator [Acinetobacter sp. SH024]
 gi|292828735|gb|EFF87097.1| transcriptional regulator [Acinetobacter sp. SH024]
          Length = 283

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 19/213 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      L+ F   AR GSF  AAE+L L+ ++IS  ++ LE+ + + LF+R  R +TLT
Sbjct: 1   MQVSLQALKAFESAARLGSFKLAAEELSLTPTAISHHVANLESRLNVDLFHRQVRKITLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L    SE + K+E     L E +V     +R+A+T  L   LL  ++ EF  L+P
Sbjct: 61  TTGQRLAGAISEGFRKIEDA---LDEITVN-GNIVRVASTSSLAAMLLIPSINEFYQLHP 116

Query: 121 DIQIQL----ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH--YL 174
           +I ++      LDN    + + Y D ++     +QS  +++ +      + + +P    L
Sbjct: 117 NISVEFSTGETLDNHLYTLPIRYGDVSL-----VQSQDIVKYE----SFNVFGSPKLDLL 167

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNW 207
           K   EP+++   +  N       +   +E+  W
Sbjct: 168 KCSSEPITLFTTEWKNKALSSPPLEAWLEENEW 200


>gi|217425581|ref|ZP_03457074.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217391544|gb|EEC31573.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 343

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 57  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 116

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G   + T        L   L +     P + ++++
Sbjct: 117 AAVRQSLDALRAATADIR--SRRANGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 174

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
             ++DID   ++AD AI           S+ L Q  +  +   A+   H          R
Sbjct: 175 T-SQDIDPQREHADVAILFGAGDWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLLR 233

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 234 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 282

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 283 NQGVALGWAPLV-DTPIAAGQLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 339


>gi|172062666|ref|YP_001810317.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995183|gb|ACB66101.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 306

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 91/187 (48%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + V  +L++ + + Q  + +P G LR+        N L   +  F   +P +++ 
Sbjct: 65  IYERCAAVLDELDSLEAQAQSHTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPKVRLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  I +   + S + + R +  I +   A P YL+    P +   
Sbjct: 125 VTLTERPVDLVGEGYDIGIVVPYMLTSETTVVRLVERIPVVIVATPAYLRTHPRPETPAA 184

Query: 186 LDKHNLI 192
           L +H  +
Sbjct: 185 LAEHAFV 191


>gi|152978977|ref|YP_001344606.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150840700|gb|ABR74671.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 291

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 2/203 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  + ++G+FT A E+L +S+S++S+ I+ LE  + I+L  R  R ++ T +G 
Sbjct: 4   FDDLHLFITIVQAGTFTKAGEKLGVSKSALSQSIANLENRLNIRLLNRTTRSVSPTPEGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   +  Y  +      L E+    +G +RI  +    + ++   L   L  +P I +
Sbjct: 64  TLYNDIAAHYAAIGLGVERLIENQNSATGTVRINASEMAIETVILPKLGRLLADFPLISV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L  DN  +DI     D  +RL   +    +  +    +     A P YL +   P +I 
Sbjct: 124 ELHSDNNFVDIVSAGFDMGVRLGDEVAQGMVAVKISPPLTTAIVATPQYLHDKNLPKNIA 183

Query: 185 ELDKHNLIT--FGDLIPKCMEDF 205
           +LD H LI   F    P    DF
Sbjct: 184 DLDNHRLINVRFAPGRPPITWDF 206


>gi|251797716|ref|YP_003012447.1| LysR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247545342|gb|ACT02361.1| transcriptional regulator, LysR family [Paenibacillus sp. JDR-2]
          Length = 293

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 122/260 (46%), Gaps = 26/260 (10%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSFT AAE L+ SQS ISR IS LE E  I L  R   G+ LT +G K+      V  + 
Sbjct: 18  GSFTKAAEALNYSQSGISRMISDLEAEWRISLLERGRFGVRLTSEGLKVLPYAKNVCSEY 77

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL-DNKDID-- 134
           +  Q ++ E     SG +RI T   +  + L   +K F   YP+I  +L+L D  +I+  
Sbjct: 78  QKLQTQIDELHGLQSGLIRIGTFSSVATHWLPNIIKAFRKEYPNIDYELLLGDYTEIESW 137

Query: 135 ISMDYADCAIRLRKPIQSS----SLIQRKLVTIHMHAYAAPHYLKNC-REPLSIQELDKH 189
           I+    DC   LR P Q+      L Q KL+ I        H L NC R P++    D  
Sbjct: 138 ITEGRVDCGF-LRLPTQTELDTIFLEQDKLLVI----LPENHLLANCDRFPVTALSEDPF 192

Query: 190 NLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            L+  G    I +  E  N           P++     + Y ++M     G GI++LP+ 
Sbjct: 193 MLLEKGAKAEISEIFERCNI---------TPKVQFTTWDDY-AVMSMVESGLGISILPEL 242

Query: 248 IVKDNPNLVRIMEDVITPSF 267
           I+K  P  + +++++  P++
Sbjct: 243 ILKRIPYRI-VVKELEVPAY 261


>gi|160896598|ref|YP_001562180.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362182|gb|ABX33795.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 300

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 90/174 (51%), Gaps = 2/174 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             WD  R+F  +AR+GS + A+  L L  +++SR++  LE+ + + LF RH  G  LT  
Sbjct: 1   MQWDDARIFLAIARAGSLSGASAALGLGVATVSRRLDRLESALSMPLFSRHQSGYRLTAD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    +E   +      +  +S  + +G +R+AT  +L   L+  +L      +P +
Sbjct: 61  GQAL-LAPAEALEQAAQALGDAAQSQAQVAGVVRLATAENLANPLIAPSLVPLFARHPGL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           ++QL+   + +++    AD A+R+ +P ++  L  R+L T+    Y +  Y++ 
Sbjct: 120 RVQLVSGVQTLNLHRRDADLAVRMTQP-EAGHLTIRRLGTLGFGLYGSAGYVQG 172


>gi|88799855|ref|ZP_01115428.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
 gi|88777435|gb|EAR08637.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
          Length = 296

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 129/268 (48%), Gaps = 16/268 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M ++   L VF  V + G  + AA +L L +SS+SR I+ LE ++ I+LF R++R + LT
Sbjct: 1   MQWNIADLPVFAAVVQHGGISSAARELRLPKSSVSRFINRLEQDLNIRLFERNSRQMRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++    +  ++E+   ++   +  P+G+L ++  +   + ++  +L EF   YP
Sbjct: 61  QEGEIFYKHAQLILEQVESADAQMNGLNATPNGELTVSLPMAFSRLIVSKHLAEFHRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + ++ K +D+  D+ D A+++ + +  S  I   L++  +   A P   +     
Sbjct: 121 HVRVYITVNPKPVDLIGDHIDIAVQVGE-LPDSDYIAVPLISHRLIWVAHPEIARR---- 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236
               ++D  +L T  D +  C   +N      R  G        + ++ +  + I     
Sbjct: 176 --YGQVD--DLSTLNDAVHICEARYNQTPLAIRHKGSRDSITLNAAIETSDPIMIKDSIQ 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMED 261
              GI LLP    K+   +  LV++ ED
Sbjct: 232 QKLGIGLLPSIYCKEELADGRLVQVAED 259


>gi|269854715|gb|ACZ51387.1| putative regulator [Pseudomonas sp. NyZ402]
          Length = 309

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 127/287 (44%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +G+F  AA QL +++S IS +I  LE  +   LF+R  R + L++ G   +
Sbjct: 7   VEAFVRVAETGNFAKAALQLGVTRSVISHRIQQLEQFINAPLFHRSTRHVRLSDVGETYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S++     +    ++E   KP+GKLRI              + EF  LYPDI+I ++
Sbjct: 67  KECSDMVANFNSLTEHMRELRAKPTGKLRIQMLPGFAIGHFGRMMAEFNHLYPDIEIDVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D   +  D A ++  P+ S +LI+RKL ++      +P Y      P    +L 
Sbjct: 127 VNDRVVDPIEEGFDVAFQMFPPL-SETLIERKLFSVRRLFCMSPQYAAKFGVPQHPNDLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H +  +     +      W+ T +   +       ++ NS   +  Y   G  I  LP 
Sbjct: 186 NHKIAMYAGYPSRN----RWVFTHEGEQLNLSLPGQMRSNSVHLLRDYAETGVCIVCLPT 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  D+     L+ ++      SF     +P   +   K++    F+
Sbjct: 242 LVASDDLLAGRLIPVLPKYTLSSFNFSAVFPATQRRALKVRTLIEFL 288


>gi|254560143|ref|YP_003067238.1| LysRl family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254267421|emb|CAX23260.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           DM4]
          Length = 307

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 112/252 (44%), Gaps = 23/252 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  +  +GS + A  Q  LS  ++SR+++ LE E+G++L +R  R + LT
Sbjct: 1   MPMNLLDVALFCAIVTTGSLSAAGRQAGLSPMAVSRRLAALEHELGVRLIHRTTRSVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKP--------SGKLRIATTIDLGQNLLQGNL 112
             G        E +  L  T +E QE++           SG LR+     +G+ L+   +
Sbjct: 61  ADG--------ETFLPLAQTMLEAQEAATAAFSEQHEGLSGVLRVTAPHRIGRALVVPLV 112

Query: 113 KEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
            + +   P +++ L   +  +DI     D AIR+   +Q+S L+  ++        AA  
Sbjct: 113 VQLMAENPRLKVDLTFSDGIVDIVAGGIDVAIRVAT-LQASELVAVQVADNPRILCAATT 171

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           YL     P  + +LD H  +T   +      D         PI +     L  +S  ++ 
Sbjct: 172 YLAAHGCPERLADLDAHACLTLHAM------DVWTFRQAGHPIAKRIKGRLAASSVDTVH 225

Query: 233 QYCVLGSGIALL 244
             CV G+G+ALL
Sbjct: 226 AACVAGAGLALL 237


>gi|239833665|ref|ZP_04681993.1| HTH-type transcriptional activator ampR [Ochrobactrum intermedium
           LMG 3301]
 gi|239821728|gb|EEQ93297.1| HTH-type transcriptional activator ampR [Ochrobactrum intermedium
           LMG 3301]
          Length = 293

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 8/189 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF VV R  +F  AAE+L ++Q+++++QI GLE E+G+KLF R  R L +TE    
Sbjct: 8   NGLRVFEVVTRHLNFRLAAEELGVTQAAVAQQIRGLEAELGLKLFERQPRTLVMTEAARA 67

Query: 66  LHRVTSEVYHKL-ETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +  L E T++      ++P  + L ++ T       L   L EF   +PDI+
Sbjct: 68  YIASVRRAFDLLSEATEM------LRPEPQHLTVSVTPTFASKWLIPRLAEFTQAHPDIE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++  +K  +   D  D A+R  +P     L    L    + A A+P  ++   +P   
Sbjct: 122 LRIVASDKVANFQTDAVDLAVRYGEPPFGPGLNAELLFEHVIVAVASPVLVERLGDPGLP 181

Query: 184 QELDKHNLI 192
           + L ++ L+
Sbjct: 182 ENLQRYPLL 190


>gi|238026519|ref|YP_002910750.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237875713|gb|ACR28046.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 294

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 3/171 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ LRVF  +AR GS + AA  L +S ++ISR+I  LE  +G +L  R   G  LT  
Sbjct: 9   LDWEDLRVFVALARHGSLSAAARALSVSHATISRRIQSLEHALGERLVERRPDGYVLTPA 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++     SE+    E      ++ S  P G +R+     L Q+ L   L   +  +P +
Sbjct: 69  GTRALAGASEMETAAERLSRGGRDDS--PRGLVRLNAPPSLVQHFLIARLATLVARHPSL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
            I +  D + + +    AD A+R  +P     +I + + T     YA P +
Sbjct: 127 DIDVASDFRAVSLDRREADIALRFGRP-GDGDVIAKSVATPGYGFYATPQW 176


>gi|221198047|ref|ZP_03571093.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221204395|ref|ZP_03577412.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175252|gb|EEE07682.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181979|gb|EEE14380.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 313

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 126/285 (44%), Gaps = 11/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+ G      
Sbjct: 20  LFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQDGEIFMAR 79

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP + + L L 
Sbjct: 80  AEALLSAADAARASVGRGRTEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPSVSLDLRLS 139

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIRL   ++ S+L+ RKL T       +P YL     P    +L KH
Sbjct: 140 DEIVDLVDEGYDVAIRL-GALKDSTLVARKLATNRRVLCCSPAYLAERGMPRHPADLAKH 198

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             +  GD       D+++ AT   P+       L  ++  +I +  V G GIA+   + V
Sbjct: 199 ECVILGD-----QRDWSF-ATPQGPLTVRVGGRLVASNGEAIREALVDGFGIAIKSTWDV 252

Query: 250 KD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                +  LV +++D        V+  YP       K  AF  F+
Sbjct: 253 GPLLASGALVTVLDDYPFAEDIAVWAVYPSRAHVPLKTLAFIAFL 297


>gi|53724361|ref|YP_104709.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67640368|ref|ZP_00439177.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|254201806|ref|ZP_04908170.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254207135|ref|ZP_04913486.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|52427784|gb|AAU48377.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|147747700|gb|EDK54776.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147752677|gb|EDK59743.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|238521068|gb|EEP84522.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
          Length = 306

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 21/305 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLH----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L+    R+ SE++   E      Q+      G++R++     GQ ++   L  F  L
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQ----GRVRLSVPSGYGQLVMSNWLIAFKRL 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           YP I + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P +    
Sbjct: 117 YPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQ--NLVARDMGAVRYVACASPGFAATH 174

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCV 236
             P  + +L    +IT   ++ + +    +L      +  EP    L   ++L + Q  +
Sbjct: 175 GMPTELGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQAIL 230

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIF 291
            G G+ ++PDY+V D+     ++  +     ++     Y  Y     +T     F +F+ 
Sbjct: 231 AGLGVGIVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFML 290

Query: 292 LKARD 296
            +AR+
Sbjct: 291 EEARN 295


>gi|241668908|ref|ZP_04756486.1| LysR family transcriptional regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877440|ref|ZP_05250150.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843461|gb|EET21875.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 308

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 16/244 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++F      G+ + A  + +LS +SIS +I+ LE     KL  R  R +  T+ G KL
Sbjct: 6   ELKLFVAAINYGNLSAAGREFYLSPASISNKINALEEYYQTKLLIRTTRKIEPTKAGEKL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++  +LE  Q ++Q +     G ++I    DLG+ ++   L EF    P+IQ  +
Sbjct: 66  YITAIKLLEQLENLQEDIQNNENTAEGIIKITIPFDLGKQIILPILDEFKEKNPNIQYDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCREPLSIQ 184
            L +  I  +    D AIR    +  S+ I +KLV  +    A+P YL+  N      I 
Sbjct: 126 NLTDDVISYNQFPFDIAIRYGN-LPDSNFIAKKLVDNYRMLCASPEYLQKMNISNINDIN 184

Query: 185 ELDKHNLITF---GDLIPK--CMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238
            LD ++ IT     + I K   ++  N    VD +P      S +  N Y+S  Q C+ G
Sbjct: 185 MLDNYDFITLKINSNTIKKLYLIDQENNKYEVDIKP------SYIVNNGYIS-RQMCING 237

Query: 239 SGIA 242
           +GI+
Sbjct: 238 NGIS 241


>gi|229590273|ref|YP_002872392.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
 gi|229362139|emb|CAY49041.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
          Length = 302

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 77/145 (53%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A   L + +S +SR+I+ LE  +G +L  R  R LTLT  G
Sbjct: 3   DLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLGARLLQRTTRQLTLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R    +  + E     +   S +P G+LR++  + + Q++L   +  FL  +P +Q
Sbjct: 63  ERYLRHCQAMLLEAEMADEAVASMSSEPRGRLRVSCPVGMAQHILPEIVAGFLAAHPQVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK 148
           +++ L N+ +D+  +  D A+R+R+
Sbjct: 123 LEMTLVNRRVDLVAEGIDVALRVRE 147


>gi|226228090|ref|YP_002762196.1| LysR family transcriptional regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226091281|dbj|BAH39726.1| LysR family transcriptional regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 304

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 125/302 (41%), Gaps = 30/302 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ + D L VF  VA   S   A ++L ++ S++S+ +  LE  +G+ L  R  R   LT
Sbjct: 1   MTDELDSLTVFIAVAEQRSLRAAGDRLGVTGSAVSQSLRRLEDRLGVALVQRTTRSTRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119
           E G +L+         +      + E S +P G+LR+          L G+ L  FL  +
Sbjct: 61  EVGQRLYASVRPALEDVRNALTAIGEMSEEPRGRLRLYAG-GAADGFLSGSVLASFLFAH 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I++ + + +  +DI     D  I+L + I    +       + +     P Y+     
Sbjct: 120 PNIELDITVGDAPVDIVAGGFDAGIQLGEVIDRDMIAVPVSGDLRLVVVGTPSYVAQHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP------IGEPRISCLQVNSYLSIMQ 233
           P   ++L  H  +             NW  + D P          R   + V S L    
Sbjct: 180 PQHPRDLASHACV-------------NWHPSPDAPPYRWEFTENERDFSVAVRSRLLTTD 226

Query: 234 YCVL------GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
             +L      G G+A+L D+ V+++     LV ++++  T     Y  YP+  + +  L+
Sbjct: 227 GTMLLRMVREGVGLAMLFDFHVQEDLAQGRLVPMLQEYCTAFPGFYLHYPQKRQASAALR 286

Query: 285 AF 286
           AF
Sbjct: 287 AF 288


>gi|239820771|ref|YP_002947956.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805624|gb|ACS22690.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 299

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 120/293 (40%), Gaps = 13/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AAE+LHL+  +ISR +  LE ++ ++LF R  R + LTE G    
Sbjct: 14  LPCFDAAARHLSFTKAAEELHLTPGAISRAVKHLEQQLDVQLFERGTRSVRLTEVGEPYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +V  +L         ++ + SG  L ++T+       L   L  F   + DI +++
Sbjct: 74  KAVRDVLDQLAAAT---AAATARLSGSTLNVSTSDGFAGRWLVPRLYRFRQAHGDIDVRV 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +      D  D AIR         L    L    +    +P  LK         +L
Sbjct: 131 STTGRLASFHGDGIDVAIRY-GAGNYPGLTAEWLADEEVFPVCSPRLLKGPHALRKPADL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H LI   D  P    D+   A V    G    S L  +SY   +Q  V G G+ L   
Sbjct: 190 RHHTLIR--DGYPIAWADWLERAGVK---GVNARSGLAFDSYTFAVQAAVQGEGVVLGRT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +V D+     LVR  +  +    + Y  YP       K+KAF+ ++  + R+
Sbjct: 245 MLVADDLAAGRLVRPFKQALKAFSSFYLVYPPEAMRQRKVKAFKEWLLEEMRN 297


>gi|330960247|gb|EGH60507.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 294

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 126/294 (42%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  G +
Sbjct: 5   EDLRLAVTLSRCESLSAAARVLNVSPPALSMRLRKLETQLGITLANRDARRLSLTADGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R ++ +  +LE      ++   +  G LR+A     G+  +   L  F  L+P +++ 
Sbjct: 65  FARESAHLLEQLEALPESFKQRDERLVGTLRLAAPFGYGRQRIAPLLSRFAKLHPQLRLH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L         D +D  I +   +  S  I R L   H    A+P YL+    P +  E
Sbjct: 125 LDLRETPWPDRHD-SDAVIHI-GSLNDSLWIARPLAQNHRWLCASPAYLEQHGVPSTPDE 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL------SIMQYCVLGS 239
           L  H  I        C+ + +   T+      P    L+V   L         ++   G 
Sbjct: 183 LSAHRCI--------CIRENDEDVTLWHLSKGPTKKTLRVEPALLSNDGSVARRWAEQGQ 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI L   + V D   + NLVR++ D    S  +    P     + +++A   F+
Sbjct: 235 GIVLRSQWDVSDAIASGNLVRVLADWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|317053970|ref|YP_004117995.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316951965|gb|ADU71439.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 300

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 125/296 (42%), Gaps = 18/296 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +   F  V R+GSF+  A  L    S ISR+++ LE  +GI+L  R  R +  TE+G
Sbjct: 5   DFRQREAFLAVVRAGSFSAGARALGRDVSVISRRVAALEKRLGIRLIERTTRRIRPTEEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +           L   + E +  + +P+G +R+      G+  +   L EFL  YPDI+
Sbjct: 65  QRYRHKIELADELLREAEEEARLLAARPAGTIRLTVPAAFGRRWVAQALPEFLRHYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L   ++  D+  D  D A+R+   +  + L  RKL          P YL +       
Sbjct: 125 IVLQCSDRYADLIADNFDMAMRI-GALADNRLTARKLAPTRRLLCVTPQYLHDHPALQVP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ + F    P        L      +  P  +  + +   +++   + G G+ +
Sbjct: 184 DDLRQHDCLGF---TPMSTWPEWRLEQQGHTVSIPVKTRFESDDTDTLIAAGLSGHGVLM 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT---------VYFCYPEALKNTGKLKAFRNFI 290
           + D++V        + E V+ P  T         V+   P +   + K+ A  +++
Sbjct: 241 VADWLVHRE-----LAEGVLVPVLTDWQPVGEDGVWLLKPSSQLQSAKVAALTDWL 291


>gi|209515677|ref|ZP_03264541.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503913|gb|EEA03905.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 314

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 130/291 (44%), Gaps = 10/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R+F  VA   ++T AA +L++S  S+SR IS LE  +  +L +R  R + LT  G + 
Sbjct: 6   SMRIFERVADGATYTSAARELNMSTGSVSRLISDLEQHLATRLLHRTTRRIALTPAGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L+  + E +   + P+G LR+  +  L Q+ L   ++ +   +P +Q+ L
Sbjct: 66  LARCHSILEALDEAEAEAKSIHLSPAGCLRVHASQSLAQHYLVPAVRSYRERHPSVQVGL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +++     D A+   + ++ SSLI  +L   +    A+PHYL        + +L
Sbjct: 126 TLSDSPVNLLAGEFDMAVVAIEVLRDSSLIGTRLGRSYSVMCASPHYLDMHPMIHRLADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
              +LI         +E  +  AT    +      C+   S L+      LG G+ LLP 
Sbjct: 186 SSQSLICLAPKWSDSVELTSHAATAFETVSVKPGLCISSQSALA--DALELGMGVGLLPL 243

Query: 247 YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +   D     R++   I PS     C  E + +   L A + F+  K R W
Sbjct: 244 HAAVDAFRDGRLVH--ILPS-----CQFEPV-DIYALFASKMFLDAKVRTW 286


>gi|114705384|ref|ZP_01438292.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Fulvimarina pelagi HTCC2506]
 gi|114540169|gb|EAU43289.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Fulvimarina pelagi HTCC2506]
          Length = 299

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 138/290 (47%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +  F+ AA +   S++ +S+ +  LE E+G+ L  R  R + LT  G    
Sbjct: 1   MRAFMAVVENEGFSAAARKTGRSKALLSKYVRELEDEIGVLLINRTTRQVALTAAGEVYM 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++ + +E+     +E++ +  G +R++     G   L  +L +F + +PDI + + 
Sbjct: 61  TRAGQLLNDIESLNDAAREATGEAKGMIRVSAARTFGDAHLGHSLVDFAVDHPDISLDIH 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD+  +D+  +  D AIR+ + +  S+LI R+L ++     A+P  LK   +P    ++ 
Sbjct: 121 LDDGFVDLVNEGFDVAIRMTR-LADSALIARRLASLDFCIVASPELLKRLGKPSHPSQVT 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISC-LQVNSYLSIMQYCVLGSGIAL 243
            + ++     I      F      D   G+    ++S     NS +++    + G G+AL
Sbjct: 180 NYPVV-----IDSNARIFTSWQFRDPETGQSLPVQVSGQFTANSPVTVRAAALAGLGLAL 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P ++VK++     LV++ E+ +     +Y  +P       +++ F +++
Sbjct: 235 SPSFVVKNDVREGRLVKLFEEYMESEAGIYAVFPHRRHLPARVRLFVDYL 284


>gi|107102398|ref|ZP_01366316.1| hypothetical protein PaerPA_01003460 [Pseudomonas aeruginosa PACS2]
          Length = 320

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 11/248 (4%)

Query: 10  VFYV-VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           V Y+ V   GSF+ AA +  L+ S+++R++  LE  VG  L  R    +  T  G     
Sbjct: 13  VLYLDVLNGGSFSAAARKHPLTPSAVARRMDALERAVGSTLLVRTTHTVRATPAGLAFAD 72

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  +L   + E    S  P G +RI   +  G+  L   + +FL   P + +QL L
Sbjct: 73  RARRIVTELRLARAEAVSLSTAPQGLIRIDAPVPFGRRHLAPAVADFLKANPGLDVQLRL 132

Query: 129 DNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ID+  ++    D  +R   P+  S L+   L  +     A+P YL+    P S  E
Sbjct: 133 IGSFIDLQGEHLGEVDLVLRA-GPLPDSRLVATSLAPMVRVVCASPEYLREHGVPASPGE 191

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I + +L P     + W    D  +    P+ + L  N+  +++   + G GIA 
Sbjct: 192 LPEHAGIDWDNLSPP----YAWRFQHDGKLQHLRPKRARLATNNAEAMVDAALAGLGIAH 247

Query: 244 LPDYIVKD 251
           LP ++  +
Sbjct: 248 LPTWLCSE 255


>gi|310822511|ref|YP_003954869.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395583|gb|ADO73042.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 304

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 120/264 (45%), Gaps = 9/264 (3%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V R+ SF+ AA +  +  S++SR+I+ LE+ +GI+L  R  R L LT+ G +        
Sbjct: 3   VVRTQSFSAAARERGVPVSTVSRRIARLESVLGIRLLERTTRRLRLTDAGREYFGHAERA 62

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              L      ++E   +P G++RI   I LG   +   +  +L  +P + + L L+ + +
Sbjct: 63  VDDLAQGTDRVRELQKEPRGRVRIMAPIVLGAA-VSNVIYTYLARHPGVSVDLELNERRV 121

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           D+  +  D AI L   + S+  + R+L        YA+P YL+    P  +++L +H+ I
Sbjct: 122 DLLAEGFDIAI-LTGKVDSTDFVARELWRATRKLLYASPRYLEARGAPRRVEDLARHDCI 180

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252
                               R   EPR     V+ + +  +  + G GIA+LP+    ++
Sbjct: 181 ATRAADGIATWTLAQGRRKQRFAFEPR---FYVSEFSAAHRAVLAGVGIAMLPEVHCAED 237

Query: 253 ---PNLVRIMEDVITPSFTVYFCY 273
                LVR+++     S  V   Y
Sbjct: 238 VAEKRLVRVLDGYEGESGGVSLLY 261


>gi|86136853|ref|ZP_01055431.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85826177|gb|EAQ46374.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 302

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 106/247 (42%), Gaps = 21/247 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SFT AA  L+++QS++S+QI GLE+ +G  LF+R  R L LT  G+   
Sbjct: 11  LRTFEAAARHLSFTGAAHDLNMTQSAVSQQIKGLESHLGKTLFHRRPRALELTPTGTTYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V  E +  L      +   S      +++   I      L   L  F   +PD+ + + 
Sbjct: 71  PVVREAFRTLTNGTRAISGPS---KNVVQVQCNISFAVQWLSPRLGCFYDSHPDVLLNIS 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSS---SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  +     + AD  IR    +  +    L+ R     H +   AP Y       ++++
Sbjct: 128 TEIWEPRDMAEGADVEIRFSLGLADTVRGELLHRD----HYYPVCAPSY------EVTLE 177

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H L    +L    M +F   A  DR I  P        +Y++ +   V G+G+ L 
Sbjct: 178 TLHQHRLFDCANL----MANFPAWAE-DRGIDWPNPPVTYTTTYMACLPAVVAGAGVGLA 232

Query: 245 PDYIVKD 251
            D +  D
Sbjct: 233 HDIVAGD 239


>gi|126452574|ref|YP_001067444.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167739928|ref|ZP_02412702.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167847043|ref|ZP_02472551.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|242316054|ref|ZP_04815070.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254194855|ref|ZP_04901285.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|126226216|gb|ABN89756.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|169651604|gb|EDS84297.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|242139293|gb|EES25695.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 326

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 29/302 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  ++ +  +P G LR+A +  L    +   +  +   YP +++QL 
Sbjct: 67  DGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLT 126

Query: 128 LDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L    +D I   Y    +   +   + +LI   L+   +   AAP Y++    P    +L
Sbjct: 127 LTEGALDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAPHRPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIA 242
            +H  I     +P       W   VD P     +  LQ    VNS   +    + G+GI+
Sbjct: 187 VRHAYIA----LPADQHASTW-RFVD-PDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS 240

Query: 243 LLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP+  + D   +  LVRI+ D  +  P   +   YP             N  FL AR  
Sbjct: 241 VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYP-------------NRQFLPARTR 287

Query: 298 KF 299
            F
Sbjct: 288 SF 289


>gi|53718057|ref|YP_107043.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|76810053|ref|YP_332046.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126439767|ref|YP_001057502.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126451604|ref|YP_001064752.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134279740|ref|ZP_01766452.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167917353|ref|ZP_02504444.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217419980|ref|ZP_03451486.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226193644|ref|ZP_03789247.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242315604|ref|ZP_04814620.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254181977|ref|ZP_04888574.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254187906|ref|ZP_04894418.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196379|ref|ZP_04902803.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254258226|ref|ZP_04949280.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254295973|ref|ZP_04963430.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52208471|emb|CAH34406.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|76579506|gb|ABA48981.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|126219260|gb|ABN82766.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126225246|gb|ABN88786.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|134248940|gb|EBA49022.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|157806009|gb|EDO83179.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157935586|gb|EDO91256.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169653122|gb|EDS85815.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184212515|gb|EDU09558.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217397284|gb|EEC37300.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225934222|gb|EEH30206.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242138843|gb|EES25245.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254216915|gb|EET06299.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 300

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 21/305 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLH----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L+    R+ SE++   E      Q+      G++R++     GQ ++   L  F  L
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQ----GRVRLSVPSGYGQLVMSNWLIAFKRL 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           YP I + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P +    
Sbjct: 117 YPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQ--NLVARDMGAVRYVACASPGFAATH 174

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCV 236
             P  + +L    +IT   ++ + +    +L      +  EP    L   ++L + Q  +
Sbjct: 175 GMPTELGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQAIL 230

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIF 291
            G G+ ++PDY+V D+     ++  +     ++     Y  Y     +T     F +F+ 
Sbjct: 231 AGLGVGIVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFML 290

Query: 292 LKARD 296
            +AR+
Sbjct: 291 EEARN 295


>gi|238760032|ref|ZP_04621183.1| Transcriptional regulator [Yersinia aldovae ATCC 35236]
 gi|238701719|gb|EEP94285.1| Transcriptional regulator [Yersinia aldovae ATCC 35236]
          Length = 303

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 128/271 (47%), Gaps = 7/271 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLSHARQILGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMISGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL     P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRI-GTLRDSTIHARLLGASRVRILASPDYLHRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
           L+I +L  H+L+ F        E  N  +    P G    I  L  +S  ++    + G 
Sbjct: 180 LTIDQLADHSLLGFTQ-----PESLNQWSLPHLPAGRSAIIPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVY 270
           GI  L D++ +++    R++E + + +   +
Sbjct: 235 GIVELSDFMTREDQLAGRLVEVMASQTLETW 265


>gi|217424921|ref|ZP_03456417.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217391941|gb|EEC31967.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 322

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 19/196 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G    
Sbjct: 10  LETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGRLYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I+L 
Sbjct: 70  ATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRIELS 129

Query: 128 LDNKDIDISMDYADCAIRLR---------KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L +  +DI  +  D A+R+          KPI S+    R L+       A+P YL    
Sbjct: 130 LSDHYVDIVGEGFDLALRMGNYDLPSQIVKPIGSN----RGLLC------ASPGYLARRG 179

Query: 179 EPLSIQELDKHNLITF 194
            P +  +L +H+ + +
Sbjct: 180 RPTAPADLARHDCVIY 195


>gi|213158878|ref|YP_002320876.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215482138|ref|YP_002324320.1| HTH-type transcriptional regulator gltR [Acinetobacter baumannii
           AB307-0294]
 gi|301348144|ref|ZP_07228885.1| HTH-type transcriptional regulator gltR [Acinetobacter baumannii
           AB056]
 gi|301511891|ref|ZP_07237128.1| HTH-type transcriptional regulator gltR [Acinetobacter baumannii
           AB058]
 gi|301596542|ref|ZP_07241550.1| HTH-type transcriptional regulator gltR [Acinetobacter baumannii
           AB059]
 gi|332856639|ref|ZP_08436248.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|213058038|gb|ACJ42940.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213985692|gb|ACJ55991.1| HTH-type transcriptional regulator gltR [Acinetobacter baumannii
           AB307-0294]
 gi|332727032|gb|EGJ58522.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
          Length = 288

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 116/266 (43%), Gaps = 28/266 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L++F  V   G+   A+ QLH   S+I+ +I  LE E+G  LFYR  + L LT  
Sbjct: 1   MDITQLKMFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGAPLFYREGKALKLTPS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQES---SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G     +  +  HK+     E + S      PSG LRI          L   L ++   +
Sbjct: 61  G----EIFLDYCHKILALCDEAKRSIHPDAPPSGPLRIGAIESSATTRLPNLLAKYHQRF 116

Query: 120 PDIQIQLILDNKD---IDISMDYADCAI---RLRKPIQSS-SLIQRKLVTIHMHAYAAPH 172
           P++ IQ+I        +DIS    D AI    +  P+ +   + Q  +V I  H+    H
Sbjct: 117 PEVSIQIITGTWKQLLVDISQHKLDGAIVAGNIEFPMLNKLGIYQEDMVLIASHSLGEIH 176

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
               C+E L  +E+    + T G      +E++  L  +  PI         + SY +I+
Sbjct: 177 ----CQEDLIGKEI---FMWTEGCPYRAALEEWLKLKNISLPI-------TSITSYATII 222

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRI 258
                GSG+AL+P  I +   NL  I
Sbjct: 223 GCVSAGSGVALVPKSIYEQYKNLAHI 248


>gi|183599150|ref|ZP_02960643.1| hypothetical protein PROSTU_02606 [Providencia stuartii ATCC 25827]
 gi|188021377|gb|EDU59417.1| hypothetical protein PROSTU_02606 [Providencia stuartii ATCC 25827]
          Length = 317

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 125/283 (44%), Gaps = 22/283 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +++L+VF  V   GS T AAEQL+++ S++SR +  LE ++   L YR  R + L+
Sbjct: 19  MKMTFEELQVFISVVDCGSITAAAEQLNMTISTVSRTLLRLEEKIQTTLIYRTTRKIKLS 78

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    +   E+    +  +  L      PSGKLRI  +      ++   L  F   YP
Sbjct: 79  DEGGAFLQKAREIVQLAQEAEEMLSARQTIPSGKLRIDASTPFLTRVIAPLLPLFSEQYP 138

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++++       ++     D A R+   ++ SSL    +        A+P YLK    P
Sbjct: 139 QIELEITNFEGFTNLLEKKTDVAFRI-GSLKDSSLNATLIGYSQKRLLASPAYLKKYGVP 197

Query: 181 LSIQELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            S+ +L  H L+ F      ++ P  M D   L         P I+     S   +    
Sbjct: 198 SSVDDLIHHRLLGFTAPETLNIWPIKMADGTPLKIT------PDIAA---ASGEVLFHLA 248

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIM----EDVITPSFTVYF 271
           V G GI L  D++  +   N  LV+++    ++V  P   VY+
Sbjct: 249 VQGCGILLSSDFVSYEALANGQLVQVLTEQTDEVKQPIHAVYY 291


>gi|167921492|ref|ZP_02508583.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
          Length = 298

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 127/301 (42%), Gaps = 34/301 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F   A+  +F++AA +L L+ S++SRQI+ LE  +G+KLF R  R L LT  G   
Sbjct: 10  ELHAFASSAKHLNFSYAARELGLTPSAVSRQIASLEALLGVKLFVREGRNLALTRAGQVY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++    +EL  S+ + S  L IA+        L   L  FL   PDI +  
Sbjct: 70  QARVAGPLREIGNASLELL-SAREDSNLLTIASVPTFTTKWLVPCLPRFLETAPDITLSF 128

Query: 127 ILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
                  D+     D AIR      + +Q   L  R  V +    +A  H L   REP  
Sbjct: 129 RRHLAPGDLFPLGLDAAIRYGDGRWEGVQCDYLDGRTFVPVCAPGFAERHAL---REPAD 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYC 235
           I    +        L+ +  E   WLA  DR        +  PR        Y  ++Q  
Sbjct: 186 IAAAPR--------LVHEQAE-CAWLAWADRHRATQMNALAGPRF-----EQYSVLIQAA 231

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP----SFTVYFCY-PEALKNTGKLKAFRNFI 290
             G GIAL+P ++++       +++ +  P      + Y CY PE L+ +  L+  R ++
Sbjct: 232 QAGLGIALIPAFLIRAPLAAGTLVQPLDAPVDVDEQSHYLCYAPERLQASASLRLLREWM 291

Query: 291 F 291
            
Sbjct: 292 L 292


>gi|261212747|ref|ZP_05927031.1| transcriptional regulator LysR family [Vibrio sp. RC341]
 gi|260837812|gb|EEX64489.1| transcriptional regulator LysR family [Vibrio sp. RC341]
          Length = 314

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 11/254 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE G   H+ 
Sbjct: 9   LFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTESGVLYHQA 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP++   L L+
Sbjct: 69  CLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPEVVPYLYLN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   +++    D  IR  + +  SSLI RKL T      A+P YL     P + Q+L +H
Sbjct: 129 DNISNLAESGLDVVIRYGE-LADSSLISRKLATSRRVLCASPAYLARKGIPKTPQDLAQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGIALLP 245
           + +    ++    E   W    +    + ++  +   S+      I Q+ + G GIAL  
Sbjct: 188 DCLA---MVRSNEEMKTWHFQENE---QHKVITVVPKSFADDGEVIRQWALAGMGIALKS 241

Query: 246 DYIVKDNPNLVRIM 259
              V+D+ N  R++
Sbjct: 242 ILDVQDDLNQQRLV 255


>gi|258620122|ref|ZP_05715161.1| putative transcriptional regulator [Vibrio mimicus VM573]
 gi|258587480|gb|EEW12190.1| putative transcriptional regulator [Vibrio mimicus VM573]
          Length = 280

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 129/282 (45%), Gaps = 25/282 (8%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           + ++++++S+ +  LE ++ ++L  R  R ++LTE+G +L  +       +E    EL +
Sbjct: 1   MGITRAALSQHLKALEQQLQVRLINRTTRNMSLTEEGQRLLDILQPSLMSIEQVVNELND 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
           S V+PSG +RI+ +    + L++ +L EFL  YP I+++LI+D+   +I  +  D  IRL
Sbjct: 61  SHVEPSGLIRISVSRTAARLLIEPHLGEFLSRYPKIRLELIMDDGFSNIVAEGVDAGIRL 120

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
              +    +       +      AP Y +    P + +EL+ HN + +          F 
Sbjct: 121 GISLDEHMVAVPITPPLTNAIVGAPDYFQRNGIPENPEELETHNCLAY---------RFT 171

Query: 207 WLATVDR-PIGEPRISCLQV----------NSYLSIMQYCVLGSGIALLPDYIVKDNPNL 255
              T+D   +  P I    V          N   S++Q  + G G+    D  V+ + N 
Sbjct: 172 SSGTIDHWSLTSPDIEKHTVVFKPKGNAVFNDDHSMLQAAIQGVGLVKHIDLWVEKHINE 231

Query: 256 VRIMEDVITP---SFTVYFCY-PEALKNTGKLKAFRNFIFLK 293
            R +  V+ P   SF  ++ Y P       K++   +F+  K
Sbjct: 232 GR-LSRVLAPWCKSFPGFYLYIPSREHMPKKIRVLMDFLIEK 272


>gi|161519867|ref|YP_001583294.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353955|ref|YP_001949582.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160343917|gb|ABX17002.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337977|dbj|BAG47046.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 327

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 1/179 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            + ++ +  F  +  +GS + AA Q+H +Q ++SR++  LE  +G++L  R    + LT 
Sbjct: 26  GYRFELMETFVRIVEAGSLSAAAAQMHTTQPTVSRRLQALERSLGVRLLQRTTHAMRLTV 85

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++       + +L+ +  +P G LR+A     GQ      L  FL  YP 
Sbjct: 86  DGERCFKRAKDLLASWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVEPLARFLRDYPR 145

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++ +L +   D      DCAI++ +P     ++  +L  +     AAP  L     P
Sbjct: 146 VSVEWLLQDDVRDFVGSGIDCAIQVGEPTD-PGVVAIRLTNVPRFVAAAPSVLGGADVP 203


>gi|309779502|ref|ZP_07674263.1| HTH-type transcriptional regulator TrpI [Ralstonia sp. 5_7_47FAA]
 gi|308921743|gb|EFP67379.1| HTH-type transcriptional regulator TrpI [Ralstonia sp. 5_7_47FAA]
          Length = 288

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 25/252 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR GSF  AA++LH++  ++SRQI  LE  +G+ LF R  R + LT  G +
Sbjct: 7   NTLRVFEAAARHGSFVRAAQELHVTHGAVSRQIRQLEASLGVDLFERRNRAVFLTPAGDQ 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           LH   ++ +  L  +   +   ++  S  L ++    L    L   L  F   +P IQ+ 
Sbjct: 67  LHAAATDAFEILTDSIDRIARRAM--SSTLVVSCEPTLAMRWLIPRLSRFQARHPAIQVH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L      ID +    D A+R            R       H +AAP     C E +    
Sbjct: 125 LFAAGGPIDFARTGVDVALR------------RDDFAWPAHVHAAP----ICDEWIGPVH 168

Query: 186 LDKHNLITFGDLI-----PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + ++     L+     P   + +   ++  RP G  R+   +   +   +Q  + G G
Sbjct: 169 ARQADIAARRRLLHTVTRPDAWQAWWRASSTARPRG--RLPEARYEHFYLSLQAALAGQG 226

Query: 241 IALLPDYIVKDN 252
            A+    +  D+
Sbjct: 227 TAIASKLMAGDD 238


>gi|167813997|ref|ZP_02445677.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
          Length = 302

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 21/305 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLH----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L+    R+ SE++   E      Q+      G++R++     GQ ++   L  F  L
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQ----GRVRLSVPSGYGQLVMSNWLIAFKRL 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           YP I + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P +    
Sbjct: 117 YPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQ--NLVARDMGAVRYVACASPGFAATH 174

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCV 236
             P  + +L    +IT   ++ + +    +L      +  EP    L   ++L + Q  +
Sbjct: 175 GMPTELGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQAIL 230

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIF 291
            G G+ ++PDY+V D+     ++  +     ++     Y  Y     +T     F +F+ 
Sbjct: 231 AGLGVGIVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFML 290

Query: 292 LKARD 296
            +AR+
Sbjct: 291 EEARN 295


>gi|126740901|ref|ZP_01756585.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126718001|gb|EBA14719.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 302

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SFT A E+L L+QS++S++I  LET++G  LF R  RG+ LT  G  L 
Sbjct: 9   LRCFEAAARHQSFTSAGEELGLTQSAVSKKIKELETDLGFDLFQRVGRGVVLTSAGQGL- 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGK--LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              +++   L   +  LQ++    +GK  LRIA         L   L +F   +P+I++ 
Sbjct: 68  --AADLAQNLGALRNSLQKAVAAGAGKSALRIAVLPTFANRWLIPRLPDFFDQHPEIELN 125

Query: 126 LILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           L+   +  D + D  D AI          Q S L   ++V I   A+   H L +
Sbjct: 126 LLTRLEPFDFTRDPFDLAIHYGFDNWPGAQMSPLFGEQMVPIAAPAFLERHGLTD 180


>gi|61611852|gb|AAX47244.1| LysR-type regulator [Delftia tsuruhatensis]
          Length = 295

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 118/255 (46%), Gaps = 14/255 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +R F  + R GS+  AAE   +  S++ R+I  LE   G  LF R   G   +   +
Sbjct: 11  WDLIRAFLALERHGSYEVAAELEGIDDSTLRRRIRLLEQHFGRALFVRAEGGWRAS---A 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+ + S    ++E       +     +G +RI + +D+               YP +  
Sbjct: 68  DLNALISAA-QRMEEAARSFCQDHHAGAGVIRI-SVMDVFAQRFAPVFAALSEKYPKLVF 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQ-RKLVTIHMHAYAAPHYLKNCREPLSI 183
            +  +   +++  D  D A+RL +P ++S+ +  RKL  + + AYA+  YLK   E    
Sbjct: 126 TITTEAHFVNLEQDQVDIAVRLARPERNSNALHVRKLGDVAVGAYASDAYLKRTTELAH- 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +KH L+     +    +D +++ A++D    G      LQ +S+  + Q C LG G+
Sbjct: 185 ---EKHQLLAMN--LQFFHQDHHFIYASLDWSRFGLSGQVRLQSDSFAPLAQLCALGQGL 239

Query: 242 ALLPDYIVKDNPNLV 256
           ALLP ++  + P LV
Sbjct: 240 ALLPKFLAAEYPQLV 254


>gi|330810801|ref|YP_004355263.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378909|gb|AEA70259.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 296

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 80/140 (57%), Gaps = 4/140 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  F  +A +GSF+ A E+LHL+Q +IS++I+GLE ++ ++LF R  R + LTE 
Sbjct: 1   MDLANLNAFIAIAETGSFSGAGERLHLTQPAISKRIAGLEQQLKVRLFDRLGREVGLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++ + L+ T+  L   S + +G+L +AT+  +G + L   L+EF   YP  
Sbjct: 61  GRALLPRAYQILNVLDDTRRALTNLSGEVTGRLTLATSHHIGLHRLPPLLREFTRRYP-- 118

Query: 123 QIQLILDNKDIDISMDYADC 142
             Q+ LD + +D  + Y + 
Sbjct: 119 --QVALDIQFLDSEVAYEEI 136


>gi|209694507|ref|YP_002262435.1| transcriptional regulator, LysR family [Aliivibrio salmonicida
           LFI1238]
 gi|208008458|emb|CAQ78624.1| transcriptional regulator, LysR family [Aliivibrio salmonicida
           LFI1238]
          Length = 305

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 22/274 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  SGSF+ AA  L ++ S +SRQ+S LE  + +KL  R  R   LT  G   +
Sbjct: 13  MAAFVTVVDSGSFSKAAIILDMTPSGVSRQVSRLEKALQVKLLERTTRKQILTVAGQDTY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +        ++ K  G+LRIAT    G  +LQ  L+ F+  YP I +++ 
Sbjct: 73  NYCKNIVDNAQEVVNVSDSNNNKIEGELRIATPKAFGNKVLQPLLRIFVHHYPHITLKIK 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  D   D  D   +L    Q  +L+ +KL  + +   A+P YLK    P    EL 
Sbjct: 133 VTDQPCDPIHDNLDLIFKLTNSPQ-ENLVAKKLGDVDLILCASPEYLKQKGIPNHPMELS 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--------VNSYLSIMQYCVLGS 239
            ++ +  G+       D  WL        E    CL         VN     +       
Sbjct: 192 AYDCLYLGE----TQHDNQWLF-------EKGNECLTMTVNGRFIVNHTEMRLDAVKHHL 240

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           GI + PD++V+++    +++E  + P +T+   Y
Sbjct: 241 GIGVFPDFVVREDLTHGKLIE--VMPDWTLQGNY 272


>gi|167573830|ref|ZP_02366704.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 299

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 128/299 (42%), Gaps = 17/299 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V  +GS T AAE+L L+++ +S  +  LE E+G  L  R  R L +TE G
Sbjct: 8   NLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHMQRLEAEIGASLLVRTTRRLNVTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    E         +    G LR++  +D G  ++   L      +P + 
Sbjct: 68  RAFYDACRDILRATEAALAAAAGDAGPLRGTLRVSAPVDYGSLVVAPALVALRDAHPALD 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ D++ +D+  D  D AIRL + +  S+    K+        A+P ++     P + 
Sbjct: 128 VELLCDDRVVDLVRDNLDVAIRLGR-LADSNHRAVKIGGFERWLVASPAFVARHGAPAAP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQV---NSYLSIMQYCVLGS 239
             L     +    +    +E       ++R  GE   + C +    N+  +     + G 
Sbjct: 187 DVLGALPYVMLSTVPRTTLE-------LERAHGERASVRCRRAFASNTATACRAAVLAGG 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G  +   +   D+     LVR++ D   P   ++  +P     + K++A  +   LKAR
Sbjct: 240 GFGVATSFSTADDVAAGRLVRVLPDWSFPPGDIHAVFPSTSHPSAKVRALID--VLKAR 296


>gi|309779222|ref|ZP_07673985.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308922026|gb|EFP67660.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 305

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 8/176 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  WD +R F V+AR GS + AA +L +  ++++R+   LE  +G++LF R  RG  LT 
Sbjct: 15  SLQWDDVRYFLVLAREGSLSAAARRLAVEHTTVARRADALEQSLGVRLFDRLPRGWRLTA 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPS---GKLRIATTIDLGQNLLQGNLKEFLLL 118
           +G+ L    +E   ++E        ++       G +RI+    +  +++  NL      
Sbjct: 75  EGNAL----AERAERMEQEAAGFARAAAGAGSLRGTVRISAPPTVASHIIAPNLATLRRQ 130

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
           +P I + L+ + ++ ++    AD A+RL +P  SS+L  R L  +    YA    L
Sbjct: 131 WPGIDLVLLGEKRNANLMAHEADLAVRLSRPT-SSALATRPLGDLGYGLYATAEVL 185


>gi|319763136|ref|YP_004127073.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330825199|ref|YP_004388502.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317117697|gb|ADV00186.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329310571|gb|AEB84986.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 305

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 137/298 (45%), Gaps = 20/298 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  VA  G F  A   L + +S +SR+++ LE  +G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVAERGGFAAAGRALGIPKSRLSRRVAELEAHLGVRLLQRTTRTLSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +    +     + +   +P G +R+   + L Q +L   + +FL  +P ++
Sbjct: 63  EAYLRHCLTMRESAQAAADAVAQVRSEPRGTVRVTCPVTLAQTVLAELMPQFLERHPLVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +++  +  D A+R+R  + +S S++ ++L        A+P  +     P +
Sbjct: 123 MEMQVTNRVVNVVEEGVDVALRVRATLDESGSMVVKRLGEGCQLLVASPAQIARQGMPGT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQ------VNSYLSIMQYC 235
           +++L + + +         M      A++ R IG + R   +Q       +  L++    
Sbjct: 183 LRDLARMDTL--------AMSASEGRASL-RLIGPDGREETVQFTPRYVADDLLTLKHAA 233

Query: 236 VLGSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G+G+  LPDY+     +    VR++     P   V+  +      +  ++ F +F+
Sbjct: 234 LAGTGLCWLPDYLCLAELEAGQFVRVLPQWSQPKGIVHAVFASRRGLSPAVRGFLDFL 291


>gi|226303712|ref|YP_002763670.1| LysR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226182827|dbj|BAH30931.1| putative LysR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 303

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 128/284 (45%), Gaps = 23/284 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + ++LR  + VA +GS   AA  LH++ S IS+Q++ LE EVG+ L     RG+ LTE 
Sbjct: 2   LNLERLRALHAVAENGSVAAAARTLHVTPSGISQQLNKLEREVGVPLLEPQGRGVRLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R T+EV   L   + E+     + +G++RI   +   + +L   + E    +P +
Sbjct: 62  GRILARRTAEVLSTLAQAEAEIASLQSEVTGRVRIGALVSPSRTVLPRAIAEIRHAHPQL 121

Query: 123 QIQL----------ILDNKDIDISM--DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I             L  +D+D+ +   ++   + L   +  + +       + + A  A
Sbjct: 122 EITFNEGESEELLPALIRRDLDVVVVDSWSTLPVELPDGVSFTPVYD----DVALLALPA 177

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYL 229
            H L   +  +++ EL +H   T+     +  +   +     R  G +PRI   +V  + 
Sbjct: 178 SHPLAENKV-VALSELSEHAWATWT----RGTDFHTFTVRTLRAQGFDPRIEY-EVAEFP 231

Query: 230 SIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           + +++   G  +AL+P       P  VR+++ +      +Y  +
Sbjct: 232 TQVEFVAQGLAVALIPRLARVVPPEGVRMLDTLPPLGRDIYLAW 275


>gi|148259690|ref|YP_001233817.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146401371|gb|ABQ29898.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
          Length = 298

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 15/290 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+++  VAR GSF+ A  +  +SQ  +SR I+ LE E+G +L  R  R +  TE G
Sbjct: 3   DIAALKLYTRVARLGSFSAAGRESGMSQPQVSRMIAELEQELGARLLSRTTRAVVPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +   L+     ++E   +  G LR++     G ++    L +F   +  +Q
Sbjct: 63  KAFLLRIEAILAALDEAGQSVREGG-EFHGMLRLSMPTSFGIHVAIPRLADFAARHSRLQ 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L LD++  D+  +  D AIR+     S+S   R++  +     A+P YL     P   
Sbjct: 122 IHLELDDRRQDLVREAVDVAIRIGALPDSASATARQIALVSRVIVASPAYLAANGAPARP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGS 239
           ++L  H +I       +     N LA      GE   + +Q     N     +   + G 
Sbjct: 182 EDLAGHRII-------RGAAAANPLAWTFERDGESIAARVQPQFTTNDNEGAIVAAIAGL 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GI    ++  +   ++ +LVR++ D       V+  +P         +A 
Sbjct: 235 GITSTGEWECRRALEDGSLVRLLTDWTMADVPVHAYFPMGRNTRAAARAL 284


>gi|319780931|ref|YP_004140407.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166819|gb|ADV10357.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 298

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 139/295 (47%), Gaps = 24/295 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +R F  VAR GS   A  QL ++ S++ R+I+ LE  +G ++F +   G  LT  
Sbjct: 2   IDWDDVRYFLAVARGGSVRAAGAQLGVNHSTVLRRIAQLEERLGAQMFEKLPSGYRLTAA 61

Query: 63  GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G ++  + +++    H+LE T++  ++ SV+  G LR+     L  +LL  +  +F  L+
Sbjct: 62  GEEVLELANQMEASSHQLE-TRVFGRDQSVR--GLLRVTLAPPLATHLLMPDFADFAHLH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-- 177
           PDI+++++   +  +++   AD AIR+        +  RK + +++H             
Sbjct: 119 PDIEMEILSSGELANLTNREADVAIRV--------VYDRKTLPLNLHGLKGAEVFGGVYM 170

Query: 178 -REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYC 235
            R+ L+       + I +  +    + ++     V    G P RI+  +    +++ Q  
Sbjct: 171 SRDRLAAWRAGAPDPIRWIVISVHGIPEWASAGEVG-TTGVPFRITDAEAQ-IVAVRQ-- 226

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G GI  LP ++   +P LVR+    +    T++       + T +++ F  F+
Sbjct: 227 --GLGITTLPCFVGDADPLLVRVPGTDLHLYGTLWLLTHGETRKTKRVRLFTEFV 279


>gi|228918336|ref|ZP_04081824.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841325|gb|EEM86479.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 285

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 125/264 (47%), Gaps = 37/264 (14%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L VF  VA  GS + AA+ L   QS+++ +I  LE E+G+ LFYR+ +G+TL   
Sbjct: 1   MDIKDLTVFKKVAEEGSISKAAKSLSYVQSNVTMKIKQLEDELGVPLFYRNGKGVTLNSN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T ++    E +   +Q +  KP G L+I +T       L   LK +   YP++
Sbjct: 61  GEILLTYTRKILDLTEQSIRLVQSNQSKPLGTLKIGSTNSTVAVRLPPLLKNYCEKYPEV 120

Query: 123 QI-----------QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP 171
           ++           QL+L+ K     ++ A     +  P  +S L  ++ +TI   +Y   
Sbjct: 121 ELVLETHKSTELTQLVLERK-----LEGAFIVEDVHHPDLTSFLFCQEELTI--ISYQPL 173

Query: 172 HYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSY 228
           H         ++QELDK N++ FG+    C    ++   VD+ + E  I     L+  + 
Sbjct: 174 H---------TLQELDKVNMLAFGN---GC----HYRNRVDKWLKEAGIYPKRVLEFGTI 217

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN 252
            +I+     G GIA++   I+KD+
Sbjct: 218 EAIIGCVKAGMGIAVMVKSILKDH 241


>gi|218515508|ref|ZP_03512348.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 298

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 124/296 (41%), Gaps = 18/296 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + SF  A E+L +++S++S+ +  LE  +G+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARSFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119
           E G            ++      +++   +PSG LRI T   + ++ L G  L  F+   
Sbjct: 61  EAGEVFFAAVRPSVRQVRDAMQTVRDMQARPSGLLRI-TVSSIAESFLSGTLLAGFMQAC 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I++ + + + + DI     D A+RL + I+   +           A A+  YL+    
Sbjct: 120 PEIKLDITVTDDEFDIVETGFDAAVRLGEVIEQDMIAVSVSEPQRQCATASTAYLERHGG 179

Query: 180 PLSIQELDKHNLITF---GDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYC 235
           P    EL  H  I +    D  P     + W  T  +R         +  N    +++  
Sbjct: 180 PRHPGELRDHACIGWRPRPDTAP-----YRWEFTENNRDFDVAVDPAVTTNDMGMMIRLA 234

Query: 236 VLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             G+GI          Y   D   LV ++ED   P    Y  YP   +   KL+A 
Sbjct: 235 CAGAGITFGMMETFQPYF--DRGELVPLLEDFCPPFPGFYLYYPRRERQPLKLRAL 288


>gi|167033439|ref|YP_001668670.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859927|gb|ABY98334.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 310

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 121/293 (41%), Gaps = 18/293 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++E G +  
Sbjct: 7   MRTFARVVECGSFAAAANALDISAAQVSRIVAELENQLQTRLLHRTTRRLRMSEAGERFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    E    E + + + P G LR+     LG  LL   +  +  L P++ I+L 
Sbjct: 67  ERARQIMLLTEEAVGEARGAHLTPRGHLRLHCPHGLGL-LLMPLVAGYNALCPEVVIELT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D   +  D  I +   +  S LI   L  I     AAP YL     P   ++L 
Sbjct: 126 LSQRNPDPLAEGHDVVITVDGALPDSQLIAVPLGNIFSIPCAAPSYLNRHGVPERPEDLH 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +      P    D+ +   VD+ +  P  +    N   +++    LG GI LLP Y
Sbjct: 186 AHRCLRMA--YPMYEGDWVFPQGVDQCVITPSDN-FSTNVADAMLVASELGMGIGLLPFY 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 +   L R++         +Y  YP            R+++  K R W
Sbjct: 243 TASQAIEQGRLCRLLAPYRLRESALYAMYPS-----------RHYLDAKVRTW 284


>gi|187933488|ref|YP_001886069.1| LysR family transcriptional regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721641|gb|ACD22862.1| transcriptional regulator, LysR family [Clostridium botulinum B
           str. Eklund 17B]
          Length = 299

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 123/281 (43%), Gaps = 23/281 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  +LR F  +A  G  T AA++L++SQ  +S+Q+  LE E+G+ LF R +R L LT+ G
Sbjct: 2   DIRQLRYFLTIAEEGHITAAAKKLNISQPPLSKQLKLLEEELGVTLFNRTSRSLELTDAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI- 122
             L   +S++    ++T  E++  +    G L I T    G N+L   +KEF   YP I 
Sbjct: 62  ILLQNKSSQLLELYKSTVNEMKNFNNGIEGTLGIGTVCSSGINVLPQKIKEFCKQYPKID 121

Query: 123 ---------QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
                    +I  +L+N  ID+        + L         ++  L    +    +  Y
Sbjct: 122 YEIYEGNSFKIMELLNNGVIDVGFVREPFNLSLYNSFVIKDNLENNLNDYFVAIAKSKFY 181

Query: 174 LKNCREPLSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
                  + I +L    LI    + D+I          +  ++   EP I C + +  ++
Sbjct: 182 NSIESNTILINKLKDKPLIINRRYDDIIK---------SACNKAGFEPHIIC-KNDDIIT 231

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF 271
            + +   G GI++LP       PN+   ++ +I PS   Y 
Sbjct: 232 SLSWAEAGIGISILPLTASNILPNVNLKIKKIIEPSIESYL 272


>gi|126441668|ref|YP_001057178.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|167908964|ref|ZP_02496055.1| Transcriptional regulator [Burkholderia pseudomallei 112]
 gi|126221161|gb|ABN84667.1| transcriptional regulator [Burkholderia pseudomallei 668]
          Length = 322

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 19/196 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G    
Sbjct: 10  LETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGRLYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I+L 
Sbjct: 70  ATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRIELS 129

Query: 128 LDNKDIDISMDYADCAIRLR---------KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L +  +DI  +  D A+R+          KPI S+    R L+       A+P YL    
Sbjct: 130 LSDHYVDIVGEGFDLALRMGNYDLPSQIVKPIGSN----RGLLC------ASPGYLARRG 179

Query: 179 EPLSIQELDKHNLITF 194
            P +  +L +H+ + +
Sbjct: 180 RPTAPADLARHDCVIY 195


>gi|325921602|ref|ZP_08183443.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325922865|ref|ZP_08184589.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325923844|ref|ZP_08185453.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325545678|gb|EGD16923.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325546658|gb|EGD17788.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325547913|gb|EGD18926.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 301

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 127/279 (45%), Gaps = 6/279 (2%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
           +    T AAE+L ++++ +S+Q++ LE E    L  R  R +  TE G   ++  + +  
Sbjct: 17  KPARLTAAAERLGITKAVVSQQVARLERECRTSLLVRTTRKVRTTELGQAFYQRCAAILR 76

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
             +     L +++ +PSG LR+   +D G  ++   +  F   YP  ++  IL ++ +D+
Sbjct: 77  DTDDAFDALTDTAAEPSGLLRLTAPLDYGVRVVVPAIAAFTRRYPACKVDAILSDQTLDL 136

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG 195
                + AIR+    +SS  +Q + +        AP  +      L+  + D   L    
Sbjct: 137 MTANIELAIRVGWLAESS--LQARKIGAFRQLLVAPSTMTTQLAGLTAPQ-DIAALPFVA 193

Query: 196 DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN--- 252
           +   +  + +++      P        + +++ L++ +    G+GI++LPDY+V D+   
Sbjct: 194 NTALRDHQRWHFAHATHAPQSVDVQPGIFLDATLAVREAVCQGAGISVLPDYVVADDLAA 253

Query: 253 PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             L+ ++     PS  ++  +P       K++AF + + 
Sbjct: 254 GRLLHVLPQWQLPSGGIHAVFPATRFRPAKVRAFVDLLL 292


>gi|299132370|ref|ZP_07025565.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gi|298592507|gb|EFI52707.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 308

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 8/129 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +LR    +A SGS + AAE L ++Q S+S+QI  LE E+G++LF+RHARG+ LTE 
Sbjct: 1   MDLRQLRSLVYIADSGSLSRAAEILRIAQPSLSQQIKDLEAELGVELFHRHARGVLLTEA 60

Query: 63  GSKLH----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G  L+     +  +V    ET   +L+     PSGK+ +     + + L    +K+    
Sbjct: 61  GHTLYAHARSILKDVAFAKETVATQLR----NPSGKVSVGFPTSVCRGLSSALIKKVNEK 116

Query: 119 YPDIQIQLI 127
           YP+I I LI
Sbjct: 117 YPNISIYLI 125


>gi|299133670|ref|ZP_07026864.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gi|298591506|gb|EFI51707.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 307

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 10/246 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +       GS + A  +L +   +ISR++S LE  +  +L  R  R L LTE G+ 
Sbjct: 5   EAMSLLVTAVEEGSLSAAGRKLGVPLPTISRKVSELEAHLKTQLLVRSTRKLGLTEAGTA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   ++  + +       P G L I   +  G+  +   + +FLL +P+I ++
Sbjct: 65  YIAACKRILEWVDEAEEQATGEYSAPRGGLAITAPVAFGRLHVLPIVNDFLLRFPEINVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +K+ID+  D+ D A+R+ + +  S+++  ++  I      +P Y K    P +  +
Sbjct: 125 MTLSDKNIDLIEDHIDMAVRIGE-LPDSTMVATRVGAIRRVVCGSPAYFKAHGTPQTPDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGI 241
           L+ H  + F    P     F       +  G PR    +  L VN+  + +   + G G+
Sbjct: 184 LNAHMCVAFAIASPASFWTF-----AKKGKGPPRPVRPVCRLAVNTAEAAVDAAIAGIGL 238

Query: 242 ALLPDY 247
             +  Y
Sbjct: 239 TRVLSY 244


>gi|153952705|ref|YP_001393470.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219853376|ref|YP_002470498.1| hypothetical protein CKR_0033 [Clostridium kluyveri NBRC 12016]
 gi|146345586|gb|EDK32122.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219567100|dbj|BAH05084.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 301

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 123/259 (47%), Gaps = 16/259 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L+ F  VA+  +F  A E+L+ SQSS+S  I  LE E+G KLF R  R + L E 
Sbjct: 1   MDIKQLQTFITVAKLLNFREAGEELNYSQSSVSDHIRSLEKELGTKLFERLGRKVFLNEN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL  +  ++    +  Q  L   + K SG LRI     L    L   LKE+ ++YPD+
Sbjct: 61  GKKLISLAEKIIQDEKEIQ-GLFNKNEKISGLLRIGAAETLSVFWLPPILKEYRIIYPDV 119

Query: 123 QIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP-HYLKNCR 178
           ++ L +D+       +S +  D A  L    Q   + Q  ++       AAP H L N  
Sbjct: 120 KVTLRMDDCVEFPKMLSHNMIDVAFSLHDQSQHEYISQINILKDSTVFVAAPDHPLVNLN 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYC 235
             + I EL+  + I     +P+   +  +   ++  + E  I   + ++++S  +I Q  
Sbjct: 180 R-IKIHELENQSFI-----LPEA--ECCYRVELEELLKENGIKIDTIMELSSLEAIKQCV 231

Query: 236 VLGSGIALLPDYIVKDNPN 254
            +G GI+LLP   V+   N
Sbjct: 232 KIGLGISLLPKIAVQREIN 250


>gi|121596886|ref|YP_990303.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|134284157|ref|ZP_01770850.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|238563203|ref|ZP_00439260.2| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|251767794|ref|ZP_04820253.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254203217|ref|ZP_04909579.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254208552|ref|ZP_04914901.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|121224684|gb|ABM48215.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|134244475|gb|EBA44580.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147746262|gb|EDK53340.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147751239|gb|EDK58307.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|238521170|gb|EEP84624.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243061704|gb|EES43890.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 343

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 57  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGTRLF 116

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G   + T        L   L +     P + ++++
Sbjct: 117 AAVRQSLDALRAATADIR--SRRANGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 174

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
             ++DID   ++AD AI           S+ L Q  +  +   A+   H          R
Sbjct: 175 T-SQDIDPQREHADVAILFGAGDWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLLR 233

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 234 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 282

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 283 NQGVALGWAPLV-DTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 339


>gi|104782298|ref|YP_608796.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95111285|emb|CAK16005.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 300

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 126/297 (42%), Gaps = 25/297 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++++ F  V  +GSFT AA+ L +S++ +S+ I  LE  + + L  R  R + LTE G  
Sbjct: 11  NRVQTFLAVVDAGSFTKAADTLGISKAMVSQHIKALEEALAVTLLLRSTRAIALTEAGQS 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   +E+    + +     +G+LRI+TT + G+  +   L  F   YP + + 
Sbjct: 71  FYDDFKVIVSDVESAFDNVMQRHNGVAGRLRISTTAEYGERFILPLLPAFAARYPALSLS 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              D+   D+  +  D  +RL   +  S+L  R L    +   A+P +L           
Sbjct: 131 YETDSSLSDLIAERLDLVVRL-GTLPDSNLRSRTLGDYAIELVASPDFLG---------- 179

Query: 186 LDKHNLITFGDL--IPKCMED-------FNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             +H L    DL  +P            +  LA     +    ++  Q N+   +    +
Sbjct: 180 --RHALGKPDDLAGVPWIANSNLHNPTRWTLLAADGENVSVGGVAAYQSNAAQGVRAMAL 237

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              G+A+LP ++++    N +L R++ D       +   YP       + + F +F+
Sbjct: 238 ASLGVAVLPAWLIEQDLANGSLQRVLPDYSLAKQPISVVYPNGSHVPQRTRVFIDFL 294


>gi|94310533|ref|YP_583743.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
          Length = 193

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 83/152 (54%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V + GSF+ A+    + +S +SR+I+ LE E+G++L  R  R + +T  G
Sbjct: 29  DLNDLSLFAQVVQHGSFSAASRATGVPKSRLSRRIAQLEKELGVQLLRRTTRQVRVTPLG 88

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    E+    E  +  ++ +  +P G LRI+  + + Q LL  ++  F+   P IQ
Sbjct: 89  EAYYARCREMLDAAEAAREVIEHARDQPGGFLRISCPVGIAQVLLAPSIGHFMRANPGIQ 148

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSL 155
           +++   N+ +D+  +  D A+R+R  ++ SSL
Sbjct: 149 LEVEATNRRVDVIAEGFDLALRVRNVLEDSSL 180


>gi|317055447|ref|YP_004103914.1| LysR family transcriptional regulator [Ruminococcus albus 7]
 gi|315447716|gb|ADU21280.1| transcriptional regulator, LysR family [Ruminococcus albus 7]
          Length = 297

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 67/124 (54%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  +AR GS T AAEQLH++Q ++SRQI  LE E+G KLF+R +  + LT++G  L 
Sbjct: 6   LRYFLTIAREGSITSAAEQLHITQPTLSRQIKDLEDELGQKLFHRSSHSMKLTQEGFILR 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   ++ T  E        +G + I     L  +L+   + E    YPDI+  L 
Sbjct: 66  QRAEEIVAMVDKTSAEFLSMDKPLAGDIYIGGGETLAVSLIADLIAELRKEYPDIRYHLY 125

Query: 128 LDNK 131
             N+
Sbjct: 126 SGNE 129


>gi|218516121|ref|ZP_03512961.1| transcriptional regulator, LysR family protein [Rhizobium etli
           8C-3]
          Length = 277

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG----SKLHRVTSEVYH 75
           F  AAE   +S + +++ I  +ET +G KL +R  R   LTE G     +  R  SEV  
Sbjct: 1   FAAAAEIAQVSPAMVAKHIKTIETRLGAKLIHRTTRRHQLTEVGQLYYERCKRALSEVAL 60

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
             E +  ELQ +   P G+LR+   +  G  +L   L ++   YPD+ I+L LDN   D+
Sbjct: 61  A-EASASELQSA---PRGRLRVVAPVSFGTQVLVPALIDYQNAYPDVSIELSLDNNVHDL 116

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
             +  +  I +  P+   SL+ R L        AAP YL     P+S + L  H
Sbjct: 117 VGEGFELGIHI-GPLSDDSLVARPLTPYRRILAAAPDYLARHGRPVSPEALTNH 169


>gi|218898249|ref|YP_002446660.1| HTH-type transcriptional regulator GltR [Bacillus cereus G9842]
 gi|228901684|ref|ZP_04065858.1| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 4222]
 gi|218540735|gb|ACK93129.1| HTH-type transcriptional regulator GltR [Bacillus cereus G9842]
 gi|228857964|gb|EEN02450.1| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 4222]
          Length = 285

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 125/264 (47%), Gaps = 37/264 (14%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L VF  VA  GS + AA+ L   QS+++ +I  LE E+G+ LFYR+ +G+TL   
Sbjct: 1   MDIKDLTVFKKVAEEGSISKAAKSLSYVQSNVTMKIKQLEDELGVPLFYRNGKGVTLNSN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T ++    E +   +Q +  KP G L+I +T       L   LK +   YP++
Sbjct: 61  GEILLTYTRKILDLTEQSIRLVQSNQSKPLGTLKIGSTNSTVAVRLPPLLKNYCEKYPEV 120

Query: 123 QI-----------QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP 171
           ++           QL+L+ K     ++ A     +  P  +S L  ++ +TI   +Y   
Sbjct: 121 ELVLETHKSTELTQLVLERK-----LEGAFIVEDVHHPDLTSFLFCQEELTI--ISYQPL 173

Query: 172 HYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSY 228
           H         ++QELDK N++ FG+    C    ++   VD+ + E  I     L+  + 
Sbjct: 174 H---------TLQELDKVNMLAFGN---GC----HYRNRVDKWLKEAGIYPKRVLEFGTI 217

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN 252
            +I+     G GIA++   I+KD+
Sbjct: 218 EAIIGCVKAGMGIAVMVKSILKDH 241


>gi|118593037|ref|ZP_01550424.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118434344|gb|EAV40998.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 302

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 117/243 (48%), Gaps = 13/243 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  V   G F  AA++L L+ S +S  +S +E ++G+ L  R  R +  TEQG  
Sbjct: 8   NDLQVFLTVLNEGGFRAAAKRLGLAPSKVSTTVSRIEKQLGVPLLLRTTRSVRATEQGQA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      + H+++   +E   S+    G+L++     +  ++L   + E+   +P ++++
Sbjct: 68  LASRIQPLMHEMDAACLETLHSADFVKGRLKLNVPGAVMPDILPPLIVEYQRRHPTVEVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++N  +DI     D  IR    ++    S  I  ++  I +   AAP Y++    P +
Sbjct: 128 IVMENSLVDIIEAGCDAGIRYGASVEKDMISVPIGPRVQEIALA--AAPSYIEKYGLPET 185

Query: 183 IQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             +L  H  I +    G LIP  +++ +  A V +P+       L VN+  + + Y   G
Sbjct: 186 PHQLTDHYAIRYGLNGGPLIPWKLQNGDETANV-KPLTR---LILSVNALNTGLSYAQAG 241

Query: 239 SGI 241
            GI
Sbjct: 242 LGI 244


>gi|253576630|ref|ZP_04853958.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844044|gb|EES72064.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 296

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 13/164 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +++  +VFY  A++GS T AA  L L+Q S+S  I  LE   G+ LFYR+++G++LT
Sbjct: 1   MTNNYELYKVFYWAAKTGSLTQAANALFLTQPSVSHAIKQLEESFGLSLFYRNSKGVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+ L+    +    +   + ++ E     +G LRI  +  L ++ L   L++F   YP
Sbjct: 61  QEGAILYSYIEQSQILISLAEKKMAELKNLETGVLRIGGSDSLFKHYLLPYLEDFHRRYP 120

Query: 121 DIQIQLI----------LDNKDIDIS---MDYADCAIRLRKPIQ 151
           D+ IQL+          L    ID+    M   D  I +R+ IQ
Sbjct: 121 DVGIQLLHGTTPEIMGFLKEGKIDLGVARMPIVDPHIEVREGIQ 164


>gi|229169929|ref|ZP_04297624.1| Transcriptional regulator, LysR [Bacillus cereus AH621]
 gi|228613534|gb|EEK70664.1| Transcriptional regulator, LysR [Bacillus cereus AH621]
          Length = 294

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 133/305 (43%), Gaps = 45/305 (14%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F  VAR    T AAE+LH++Q S+S+ I+ LE ++G+ LF R  R +TL   G   
Sbjct: 5   QLKYFQTVARLEHMTKAAEELHIAQPSLSKTIARLEKDLGVPLFDRQGRQITLNSFGKVF 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    ++H+L   + E+++ +    G + +A +I     +L   L  FLL +P+++ Q 
Sbjct: 65  LKRVERIFHELSEGEREIKDLAELQQGSITLAVSIP---RILPELLGSFLLEHPNVRFQQ 121

Query: 127 I----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLK 175
                      LDN +ID  +           PI+   ++   L+T  +  A  + H L 
Sbjct: 122 FLASTPSMKRQLDNMEIDFCISSV--------PIEGDEMVWEPLITEEIFLAVPSGHRLS 173

Query: 176 NCREPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229
           N RE + + E+   + I+      F  L  +  +   +   +   + EP +         
Sbjct: 174 N-RESIYLHEVKDESFISMNTGYGFRHLTDEFCKKAGFTPHIAFEVDEPTV--------- 223

Query: 230 SIMQYCVLGSGIALLPDYIVKDNPNL----VRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            I      G GIA +P   +  N  L    +RI+E     +  + +     L NT   + 
Sbjct: 224 -ISDLIKQGLGIAFVPSLTLLKNSTLASNKLRIIEPNCERTIGLSWSKKRYLSNTA--QQ 280

Query: 286 FRNFI 290
           FR F+
Sbjct: 281 FREFV 285


>gi|77361112|ref|YP_340687.1| LysR transcriptional regulator [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876023|emb|CAI87245.1| putative Transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 307

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 129/296 (43%), Gaps = 12/296 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  +   GS T AA+ L L+++  S  +  LET++ I L  R  R +
Sbjct: 1   MKVSFEQLKSMVVFAQIVEQGSLTAAAKHLGLTRAVASYHLKKLETQLEITLLNRSTRTM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   +     +  +      +++    +P G L+I+  +++G  L+   +  F  
Sbjct: 61  ALTEAGVAYYERCRIITEQANAANQQIENIKSEPQGLLKISCPVNVGMQLIVPAINSFKR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I I L L +  +DI     D AIR    +  S+L   KL T+      +P Y  + 
Sbjct: 121 QYPKINIDLQLSDDVVDIIKHGFDFAIR-GVALSDSNLQATKLTTMSTCICGSPDYFAHF 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +P +  EL +H  + +  L  K +     L+   +         L  N+  +   +   
Sbjct: 180 GKPKNPVELAQHQWVVY-QLGSKTLT----LSKEGKKHDITMQGGLSTNNAAARTAFVEA 234

Query: 238 GSGIALLPDYIV--KDNPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  +P Y    K    L+  I++D  +    +Y  +P     + KL+ F +++
Sbjct: 235 GHGIGRIPLYDAWPKVQAGLLEIILDDYKSKDIELYGVFPPGAAGSKKLRLFIDYL 290


>gi|53720343|ref|YP_109329.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|53725575|ref|YP_103629.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67643897|ref|ZP_00442640.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|76811870|ref|YP_334592.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121599054|ref|YP_992204.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|126441066|ref|YP_001060179.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126450013|ref|YP_001081451.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|134280277|ref|ZP_01766988.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167002590|ref|ZP_02268380.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167720952|ref|ZP_02404188.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167817145|ref|ZP_02448825.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167825558|ref|ZP_02457029.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167895628|ref|ZP_02483030.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167904021|ref|ZP_02491226.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912277|ref|ZP_02499368.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167920236|ref|ZP_02507327.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|226194214|ref|ZP_03789813.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813571|ref|YP_002898022.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|254175462|ref|ZP_04882122.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254180860|ref|ZP_04887458.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254191698|ref|ZP_04898201.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254202321|ref|ZP_04908684.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254207654|ref|ZP_04914004.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254260842|ref|ZP_04951896.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254299031|ref|ZP_04966481.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254356441|ref|ZP_04972717.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52210757|emb|CAH36741.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|52428998|gb|AAU49591.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76581323|gb|ABA50798.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei 1710b]
 gi|121227864|gb|ABM50382.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|126220559|gb|ABN84065.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126242883|gb|ABO05976.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134248284|gb|EBA48367.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147746568|gb|EDK53645.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147751548|gb|EDK58615.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148025438|gb|EDK83592.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157809016|gb|EDO86186.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157939369|gb|EDO95039.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696506|gb|EDP86476.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|184211399|gb|EDU08442.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|225933679|gb|EEH29667.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505501|gb|ACQ97819.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238525359|gb|EEP88787.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243061750|gb|EES43936.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254219531|gb|EET08915.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 326

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 29/302 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  ++ +  +P G LR+A +  L    +   +  +   YP +++QL 
Sbjct: 67  DGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLT 126

Query: 128 LDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L    +D I   Y    +   +   + +LI   L+   +   AAP Y++    P    +L
Sbjct: 127 LTEGALDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAPHRPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIA 242
            +H  I     +P       W   VD P     +  LQ    VNS   +    + G+GI+
Sbjct: 187 VRHACIA----LPADQHASTW-RFVD-PDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS 240

Query: 243 LLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP+  + D   +  LVRI+ D  +  P   +   YP             N  FL AR  
Sbjct: 241 VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYP-------------NRQFLPARTR 287

Query: 298 KF 299
            F
Sbjct: 288 SF 289


>gi|221212571|ref|ZP_03585548.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221167670|gb|EEE00140.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 312

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 122/278 (43%), Gaps = 27/278 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR G F  AAE+L+++ ++IS QI  LE  +G+KLF R  R + LT+ G+ L 
Sbjct: 10  LRAFEAAARRGGFKAAAEELNVTPTAISHQIRQLEDWLGVKLFERRTRSVRLTDGGTALF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLR-IATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +   E     ++ +     GK+  + +T+      L      F   YPD  ++L
Sbjct: 70  PALRDGFDSFERA---IETTRNLDGGKVATLTSTVAFTAKCLAARAGGFRAAYPDWTLRL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI--- 183
              N  +D+    AD +IR   P   + L+   L           H+   CR  L+I   
Sbjct: 127 DATNAVVDLDRS-ADASIRY-GPGYYAGLVSELLFK--------DHFAPVCRPHLAIATA 176

Query: 184 QELDKHNLITF--GDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           Q+L +  LI F  G  +   P+ +   +WL        +P  + L+ N  +  MQ  + G
Sbjct: 177 QDLQRATLIHFDWGAAVRDDPRAITWAHWLGAAAMSGIDPN-AGLRFNDEIHAMQATLAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
            G+ L+   +V D   N  LV+   D+   SF     Y
Sbjct: 236 QGVGLISLTLVADELANGTLVQPF-DLALESFQYDLVY 272


>gi|209809765|ref|YP_002265304.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
 gi|208011328|emb|CAQ81779.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
          Length = 305

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 14/226 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F + A+S SFT A+EQL L+Q ++S++I  LE ++G  LF R  R L LTE+G +L
Sbjct: 10  NLYTFNIAAKSLSFTLASEQLFLTQGAVSQRIKQLEEQLGFNLFIRLTRKLELTEEGKRL 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V       + +   ++Q + +  SG+L I       Q+ L   L EF  LYP++ +++
Sbjct: 70  WDVLDTSLEAIFSEIEDIQFNEL--SGELYIGVAPTFAQSWLMPRLPEFQALYPNLDLKI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +    +D   +  D AI     +    L   KL   ++     P Y+   + P  +  +
Sbjct: 128 RVKASPLDFKHEPVDLAIYYSNGLH-PDLHCEKLFDEYLTPICTPEYVN--KLPKDVFNI 184

Query: 187 DKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISCLQVNSYL 229
           D   LI   + +     DF    WL+  + P      + +Q N+Y+
Sbjct: 185 DAVCLIHCTESLESIRTDFEWTYWLSMTNNP------TPVQSNNYV 224


>gi|190889957|ref|YP_001976499.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695236|gb|ACE89321.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 322

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 124/296 (41%), Gaps = 18/296 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + SF  A E+L +++S++S+ +  LE  +G+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARSFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119
           E G            ++      +++   +PSG LRI T   + ++ L G  L  F+   
Sbjct: 61  EAGEVFFAAVRPSVRQVRDAMQTVRDMQARPSGLLRI-TVSSIAESFLSGTLLAGFMQAC 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I++ + + + + DI     D A+RL + I+   +           A A+  YL+    
Sbjct: 120 PEIKLDITVTDDEFDIVETGFDAAVRLGEVIEQDMIAVSVSEPQRQCATASTAYLERHGG 179

Query: 180 PLSIQELDKHNLITF---GDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYC 235
           P    EL  H  I +    D  P     + W  T  +R         +  N    +++  
Sbjct: 180 PRHPGELRNHACIGWRPRPDTAP-----YRWEFTENNRDFDVAVDPAVTTNDMGMMIRLA 234

Query: 236 VLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             G+GI          Y   D   LV ++ED   P    Y  YP   +   KL+A 
Sbjct: 235 CAGAGITFGMVETFQPYF--DRGELVPLLEDFCPPFPGFYLYYPRRERQPLKLRAL 288


>gi|187777763|ref|ZP_02994236.1| hypothetical protein CLOSPO_01355 [Clostridium sporogenes ATCC
           15579]
 gi|187774691|gb|EDU38493.1| hypothetical protein CLOSPO_01355 [Clostridium sporogenes ATCC
           15579]
          Length = 291

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 12/195 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D  RVF  V +  SF+ AA++L+++Q ++S+ I  LE E+ I+LF R  +G+ LT +G 
Sbjct: 5   LDLYRVFGCVGKCKSFSKAAKELYMTQPAVSQSIMQLEKELSIRLFTRTPKGVILTNEGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    +     +E  + ++ +S     G L+I       +  L   L+EF + YP++++
Sbjct: 65  ILFEYVTSAISLIEAGEKKMLDSKNLMIGDLKIGVGDTTSKYFLLSYLEEFHIKYPNVKL 124

Query: 125 QLILDNKDIDI-------SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           + IL+   +++        +D A C +    PI+ S+L  +K + I         + K  
Sbjct: 125 K-ILNGTTVELCNLVKTGDIDLAICNL----PIEDSALEFKKCMEIQDIFVCGERFNKTI 179

Query: 178 REPLSIQELDKHNLI 192
            +PLS  E+ K  LI
Sbjct: 180 SKPLSFVEISKMPLI 194


>gi|241203401|ref|YP_002974497.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857291|gb|ACS54958.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 297

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 25/279 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   SFT AA  L  SQSS+S  +  LE  +G++L  R  R +  TE G +L 
Sbjct: 9   LAAFLTVAEERSFTRAAALLGTSQSSLSHTVRRLEDRMGLRLLTRTTRTVVPTEAGEQLA 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 ++ + +    L      P G +RI +     + +L   +K  +  YPDI I++ 
Sbjct: 69  ETLRPAFNDIRSRLDALGAMRHAPGGTIRITSIRHAAETILMPAVKGLMQSYPDINIEIS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D++ ID+  +  D  +RL + I+   +  +    + M   A+P Y     +P +  +L 
Sbjct: 129 VDSRLIDLVNERFDAGVRLGEHIEKDMIALKIGPEMRMLVVASPDYFARNPKPATPHDLT 188

Query: 188 KH-----NLITFGDLIPKCMEDFNWLATVD-RPIG---EPRISCLQVNSYLSIMQYCVLG 238
           +H      L T G L       + W    D +P+    E +  C   N    I+   + G
Sbjct: 189 QHRCINLRLATVGGL-------YAWEFEKDGKPLNVRVEGQFIC---NDVPMIVDAALGG 238

Query: 239 SGIALLPD----YIVKDNPNLVRIMEDVITPSFTVYFCY 273
            G+A LPD     ++++   LV ++ED  +P F  Y  Y
Sbjct: 239 FGLACLPDDYLLPLIREG-KLVPVLED-WSPPFPGYHLY 275


>gi|152995684|ref|YP_001340519.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836608|gb|ABR70584.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 305

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 138/295 (46%), Gaps = 22/295 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSFT AA++L ++ S +SRQ+S +ET +   L  R  R  T T  G  ++
Sbjct: 13  MAAFVAVVETGSFTKAAQKLGVTPSGVSRQVSRIETALSAVLIERTTRRQTTTLVGRAVY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +   I  + ++ + SG+LRIA      + +L+  L  F+  YP + +Q++
Sbjct: 73  EQCRQMLDSAKEAVIASENNANEASGRLRIAAPDSFARQVLEPLLVSFMQRYPAVSLQVL 132

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +  +D +    D    +  KP +   L+ + L  +     A+P YL +   P S ++L
Sbjct: 133 VTDLRVDPAYQNVDLVFYIAEKPYE--HLVCKTLGRVRSVLCASPQYLADHGVPNSPEDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-----MQYCVLGSGI 241
             H+ +  G      + D + + T  +  GE R        Y+       ++  + G GI
Sbjct: 191 TDHSCLPLG------LFDGDSIWTFSQ--GERRTVVTVDGRYMMTDAEMRLKGVMNGFGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMED-VITPSFT--VYFCYPEALKNTGKLKAFRNFI 290
           A  PD++VKD      +V+++ED  +   F   +Y  +P       +L+ F +F+
Sbjct: 243 APFPDFVVKDALEKGEVVQVLEDWQLNSDFQGGIYMQFPAMRFMPNRLRVFIDFM 297


>gi|118497182|ref|YP_898232.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. novicida U112]
 gi|194323480|ref|ZP_03057257.1| LysR substrate binding domain protein, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208778975|ref|ZP_03246321.1| LysR substrate binding domain, putative [Francisella novicida FTG]
 gi|118423088|gb|ABK89478.1| transcriptional regulator, LysR family [Francisella novicida U112]
 gi|194322335|gb|EDX19816.1| LysR substrate binding domain protein, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208744775|gb|EDZ91073.1| LysR substrate binding domain, putative [Francisella novicida FTG]
          Length = 308

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 12/242 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++F  V   G+ + A  + +LS +SIS +I+ LE     KL  R  R +  T+ G KL
Sbjct: 6   ELKLFVAVINYGNLSAAGREFYLSPASISNKINALEEYYQTKLLIRTTRKIEPTKAGEKL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++  +LE  Q ++Q +     G ++I    DLG+ ++   L EF    P+IQ  +
Sbjct: 66  YTTAIKLLEQLENLQEDIQNNENSAEGVIKITIPFDLGKQIILPILDEFKEKNPNIQYDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +  +    D AIR    +  S+ I +KLV  +    A+P YLK     + I   
Sbjct: 126 NLSDDVMSYNQFPFDIAIRYGN-LPDSNFIAKKLVDNYRMLCASPEYLK----KMDISNT 180

Query: 187 DKHNLITFGDLIPKCMEDFN----WLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSG 240
           D  N++   D I   +        +L   +    E  I  S +  N Y+S  Q C+ G+G
Sbjct: 181 DDINILQNCDFITLKINSNTIKKWYLIDQENNKHEVNIKPSYIVNNGYIS-RQMCLNGNG 239

Query: 241 IA 242
           I+
Sbjct: 240 IS 241


>gi|71278370|ref|YP_268410.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144110|gb|AAZ24583.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 298

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 126/267 (47%), Gaps = 7/267 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V + GSFT AA+QL +++S++S+QI  LE ++ I++  R  RG++ T  G KL
Sbjct: 9   RLIIFAEVVQQGSFTGAAKQLGITKSAVSQQIKSLEADMDIRVLNRTTRGVSTTALGQKL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++    ++  +   P G+  I     L  N++   +++  + YP I+ ++
Sbjct: 69  LSRCQVLKDQVDLIFKDIVNAEENPRGRFAITLPHSLESNVVMPAIEQLCIEYPGIEPEI 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I+ +  +D+  +  D AI     +  SS     + TI     A P YL     P  + +L
Sbjct: 129 IVSDSSLDLVENNLDVAIHAGD-LPDSSYRALPIGTITEIFCATPLYLNKNFTPQKLSDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +   I+      K M  +N  +T    +        +VN++ + +   +   G+ LLPD
Sbjct: 188 AQLKWISTSWQKQK-MSVYN--STNKEKVTIELTQFSKVNTFSTALAMALRHLGLVLLPD 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVY 270
            + K    +  LV IME    P + V+
Sbjct: 245 NVAKPLIKSGELVHIMEQFTGPVWPVH 271


>gi|167736893|ref|ZP_02409667.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167822520|ref|ZP_02453991.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167892605|ref|ZP_02480007.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167901100|ref|ZP_02488305.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167909320|ref|ZP_02496411.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
          Length = 305

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 21/305 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLH----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L+    R+ SE++   E      Q+      G++R++     GQ ++   L  F  L
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQ----GRVRLSVPSGYGQLVMSNWLIAFKRL 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           YP I + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P +    
Sbjct: 117 YPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQ--NLVARDMGAVRYVACASPGFAATH 174

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCV 236
             P  + +L    +IT   ++ + +    +L      +  EP    L   ++L + Q  +
Sbjct: 175 GMPTELGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQAIL 230

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIF 291
            G G+ ++PDY+V D+     ++  +     ++     Y  Y     +T     F +F+ 
Sbjct: 231 AGLGVGIVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFML 290

Query: 292 LKARD 296
            +AR+
Sbjct: 291 EEARN 295


>gi|313497026|gb|ADR58392.1| Transcriptional regulator AmpR, putative [Pseudomonas putida
           BIRD-1]
          Length = 294

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 125/257 (48%), Gaps = 35/257 (13%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V AR  +FTHAAE+LHL+Q ++S+QI  LE+++G+ LF R  RGL LTE+G    
Sbjct: 12  LRAFEVSARYLNFTHAAEELHLTQGAVSQQIRHLESQLGVALFKRLPRGLGLTEEGQSYL 71

Query: 68  RVTSEVYHKLETTQIEL-QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            V  +   +L     E+  +   +P   L++  ++      L   L +F   +P + I+ 
Sbjct: 72  PVVQDAISRLAVGTNEIFGQRQRRP---LKVRGSLSFLHFWLAPRLADFRRSHPQVDIRY 128

Query: 127 I-------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-- 177
           I       LD +D D+ + +          +++  L +  LV +      AP  L +C  
Sbjct: 129 ISNLWVKELDAED-DLEIRWGSGQW---AGVEAQRLTRDVLVPV-----CAPALLASCPL 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQY 234
           R+P  +  +   +++ + +          W   ++R +G  ++   S LQ ++ +S ++ 
Sbjct: 180 RDPRDLARVPLLHVLGYEE---------GWGYWLER-VGADQVDSSSGLQFDTLVSTLRM 229

Query: 235 CVLGSGIALLPDYIVKD 251
             LG G+AL    +V+D
Sbjct: 230 AELGLGVALARSSLVED 246


>gi|218681698|ref|ZP_03529499.1| LysR family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 216

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 1/175 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +A+SG+   AA+QL +  +++SR++S LE  +G KL  R  R + LT  
Sbjct: 9   LDWDDLRHFLALAQSGTLLSAAKQLGVEHATVSRRVSSLEAGLGRKLVDRRGRRIILTSD 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++ R  + V  +    +   + S+ +  G +RI+    L   LL   +      +P +
Sbjct: 69  GEQVARHAALVAVQAAAIEQLGRSSATELRGHVRISAPPALSSVLLAKPIAAVRRDHPGV 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I L+ + +   ++   AD A+R+ +P +    I  KL     H YA+  YL+  
Sbjct: 129 EITLVGEKRLASLNRREADVAVRMSRPEEGDYAIA-KLGETSFHLYASKAYLETV 182


>gi|150376993|ref|YP_001313589.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150031540|gb|ABR63656.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 295

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 17/246 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +LR F+ VA  G F+ AAE L L+Q ++S Q+  LE E  + LF R+ + +TLT+ G 
Sbjct: 9   YVQLRAFHNVAVCGGFSRAAEALFLTQPAVSDQVRKLEEEYDVLLFNRNKKQVTLTQAGH 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L  +T  ++   +     L ES    +G LRI    D   +LL   L  F   YP +QI
Sbjct: 69  QLLEITRRMFDTEQQALDLLSESRALRAGTLRIVA--DAAHHLLH-ILAAFRKKYPTVQI 125

Query: 125 QLILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            L   N +  I+  Y   AD  +    P +S      KL +  + A+A+  +   CR  +
Sbjct: 126 SLRAGNTETVITSLYSYEADIGVLGEIP-ESREFDIVKLNSTPIIAFASTEHPIACRSNV 184

Query: 182 SIQELDKHNLI--TFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238
           S++EL    L+    G    + +EDF   A V  +P        ++     ++ +    G
Sbjct: 185 SLEELAGQPLVMRERGSKTRQKLEDFAAAAGVALKP-------AIEAEGREAVREIVAAG 237

Query: 239 SGIALL 244
           +G+  +
Sbjct: 238 AGVGFV 243


>gi|103487387|ref|YP_616948.1| LysR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98977464|gb|ABF53615.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis
           RB2256]
          Length = 292

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 2/141 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT A  +L +SQ ++S Q++ LE  +G +LF+R  RGL LT++G  
Sbjct: 9   NALRAFEAAARHLNFTRAGLELCVSQGAVSHQVAALERRLGTRLFHRLPRGLALTDEGHA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V SE + ++  T  +  +   + + K+ +  T   G   L   L  F   +P I ++
Sbjct: 69  LVPVVSEAFDRVAATLDQYADGRFRETLKVGVVGTFATG--WLMPRLDAFSRAHPSIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRL 146
           +  +N  +D++ +  D AIR 
Sbjct: 127 IATNNNRVDLAGEGLDYAIRF 147


>gi|327194302|gb|EGE61163.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 296

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 1/190 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  G+ +  A++L + QS+++R ++ LE  VG+ L  R  R +TLTE+GS+ +
Sbjct: 1   MRTFVRVAERGNLSMVAKELGIGQSTVTRHLNELEEAVGVALVSRTTRRVTLTEEGSRYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E    E + +   P+G +R++ T  LG   +   + +F   +PDI++ L 
Sbjct: 61  TNCLQILRLVEQAAEEARAARQAPAGAVRLSCTAALGVMHVTRMIFDFQDRHPDIRVDLN 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  +  D A+RL  P+  SS+    +         AP YL     P    +L 
Sbjct: 121 LTDERIDLVREGVDVALRL-GPLADSSMKLHAVGESQRLLVGAPAYLSARGRPERPADLS 179

Query: 188 KHNLITFGDL 197
           ++  I   ++
Sbjct: 180 RYETIVMSNV 189


>gi|167590639|ref|ZP_02383027.1| Transcriptional regulator [Burkholderia ubonensis Bu]
          Length = 323

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 113/260 (43%), Gaps = 15/260 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSFT AA+  H+   S+SR +  LET +G++LF R  R + LT  G  + 
Sbjct: 7   LEVFKAVVDHGSFTRAADATHMGVPSVSRAVQDLETMLGVQLFNRTTRKVALTTAGHAVL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + V    E       + +   +G +RI  +       L   L  F+  +P +++ + 
Sbjct: 67  ERVAGVLASYEDLARAGSDEAGDCAGNIRIEVSTMFDTGRLASVLVRFMRAWPKVRVDVR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D   D AD AI + +     S I R L  + +  YA+P +++        +++ 
Sbjct: 127 RVDHQTDALGDLADLAIVVGR-AAPPSCIARALADVPLGLYASPAWVERVGAVAHPRDVQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
             + +  G       +   W   VD   GE       + L+ N   +++   V G G+A+
Sbjct: 186 PESCLATG------AQQSMWT-LVDERSGEHATLSARAALRTNCPHALVAAAVDGEGVAI 238

Query: 244 LPDYIVKD---NPNLVRIME 260
           LP+++         LVR+++
Sbjct: 239 LPEHLAHAPVVRGELVRVLD 258


>gi|157148623|ref|YP_001455942.1| transcriptional activator TtdR [Citrobacter koseri ATCC BAA-895]
 gi|157085828|gb|ABV15506.1| hypothetical protein CKO_04450 [Citrobacter koseri ATCC BAA-895]
          Length = 311

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 134/287 (46%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   +  +GSF+ AA  L  + + ++++I  LET +   L  R ARG+ LTE G + +
Sbjct: 11  LQVLVEIVHTGSFSAAAAALGQTPAFVTKRIQILETTLATTLLNRSARGVALTESGQRCY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +    E+ +   +P G +RI  +   G++ +   + + +  YP++Q+   
Sbjct: 71  EHALKLLTHYQRLVDEVTQIKTRPEGMIRIGCSFGFGRSYIAPAITDLMRNYPELQVHFE 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        A+P YL+   EP ++QEL 
Sbjct: 131 LFDRQIDLVQDNIDLDIRINDEI-PDYYIAHLLTKNKRILCASPAYLQKYPEPKTLQELS 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            H+ +   +   + M    W     +     +++  L  NS   ++Q+ + G GI L  +
Sbjct: 190 GHDCLVTKE---RDMTHGIWELGNGQEKKSVKVTGHLSSNSGEIVLQWALEGKGIMLRSE 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V+    +  LVR++ +    S  ++  Y E L  + KL+    F+
Sbjct: 247 WDVQPFLASGKLVRVLPEY-AQSANIWAVYQEPLYRSVKLRVCVEFL 292


>gi|15890118|ref|NP_355790.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15158284|gb|AAK88575.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 132/298 (44%), Gaps = 31/298 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF VVAR  SFT AA +L + QS++S  IS LE ++G+ L  R  R +  T  G +L 
Sbjct: 9   LAVFEVVARHQSFTDAASELGVKQSTLSYTISQLERKIGVALLARTTRSVAPTGSGLRLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +       L    + LQE+    +G +R+       +++++  L  F   YPD+  ++ 
Sbjct: 69  EILGPALRDLREELLRLQEARETIAGVVRLTMIPVAFESIVRPMLPSFCQRYPDVVFEIS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHYLKNCREPL 181
              +  DI  +  D  IR        +LI + +V + + A        +  Y +N   PL
Sbjct: 129 TSERLDDIVTEGFDGGIRF------GTLIDKDMVALPLTASTPIVIAGSASYFENYPIPL 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPI---GEPRISCLQVNSYLSIMQYCVL 237
           + + L  H  I +  L    +  F W LA   +     G+P    L ++   +I    + 
Sbjct: 183 APEHLAGHRCILYRYLSSSRL--FRWPLAKGSQKFEYKGDP---ALILDDGAAIRSAVMD 237

Query: 238 GSGIA-LLPDYIVKD--NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LL   +  D    NL  ++ D +T  P F++Y  YP   + +    AFR  I
Sbjct: 238 GLGIGFLLRSQVASDLEAGNLREVLTDWLTDLPGFSLY--YPSRRRTS---PAFRALI 290


>gi|121600485|ref|YP_991562.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|167003209|ref|ZP_02268999.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254175062|ref|ZP_04881723.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|121229295|gb|ABM51813.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|160696107|gb|EDP86077.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|243061206|gb|EES43392.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 303

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 21/305 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLH----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L+    R+ SE++   E      Q+      G++R++     GQ ++   L  F  L
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQ----GRVRLSVPSGYGQLVMSNWLIAFKRL 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           YP I + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P +    
Sbjct: 117 YPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQ--NLVARDMGAVRYVACASPGFAATH 174

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCV 236
             P  + +L    +IT   ++ + +    +L      +  EP    L   ++L + Q  +
Sbjct: 175 GMPTELGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQAIL 230

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIF 291
            G G+ ++PDY+V D+     ++  +     ++     Y  Y     +T     F +F+ 
Sbjct: 231 AGLGVGIVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFML 290

Query: 292 LKARD 296
            +AR+
Sbjct: 291 EEARN 295


>gi|119383786|ref|YP_914842.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119373553|gb|ABL69146.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 317

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 128/299 (42%), Gaps = 27/299 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F + A+  SF+ AA++L ++QS ISR +  +E   G +LF R   GL LTE GS  +
Sbjct: 24  LRAFVMAAQFRSFSRAADELDITQSGISRAVRSIEDMAGTQLFERTGHGLVLTEPGSVYY 83

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +L    + L  +  + + +L IAT   LG   L   +  F+   P I++ + 
Sbjct: 84  DEITSILSELGAATLRL-STYAEAADQLTIATLPSLGGRWLAPRIGRFIAQNPAIEVSIT 142

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-------- 179
                 D      D AI     + +  L +  +  + +  + AP  L+            
Sbjct: 143 AQIGHFDFEGSSIDAAIHYGNEVWAGCLSEMLMDEV-LIPFCAPALLRGTVPQARLLLDL 201

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PL IQ L +          P    ++     ++ P   P    ++   Y   ++    G 
Sbjct: 202 PL-IQHLHR----------PTAWREWFREVGIEHP--NP-TRGMRFEQYQMGIEAAKTGL 247

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G  L+P ++V +   N  LV +    +   +  Y  YP+A ++   ++ FR++I  +AR
Sbjct: 248 GAILMPPFMVSEEIQNGQLVALHNLPVASPWRYYLVYPKAKRSKPAVQKFRSWIRAEAR 306


>gi|73541797|ref|YP_296317.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72119210|gb|AAZ61473.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 301

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 118/258 (45%), Gaps = 32/258 (12%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD   L +F  V R GS +  A Q HL+ ++ S++IS LE  VG  LF+RHA G+ LTE 
Sbjct: 6   FDLVTLGLFVAVVRQGSISAGARQSHLAVAAASKRISDLEAAVGAPLFFRHAAGVQLTEA 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +   +E     + + +    G++R+          L  +L  F+ L+P I
Sbjct: 66  GQACYHHALTILQDVERMAGVMSDYASGVRGQVRVCANTSAITQFLPDDLAVFMRLHPTI 125

Query: 123 QIQL-----------ILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I+L           +++N+ D+ I  D   CA      + +    Q +LV +       
Sbjct: 126 RIELEEQNSSDIVAALVENRADVGIFADRTPCA-----GLVTVEYRQDELVMV-----TP 175

Query: 171 PHYLKNCREPLSIQ---ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227
           P +  + R P+      E D  +L     L  + +E+ + L   DRP    R+  +QV S
Sbjct: 176 PGHPLSERGPVRYADTLEFDFVSLPQVTSLAARLLEESSRL---DRPF---RLR-IQVRS 228

Query: 228 YLSIMQYCVLGSGIALLP 245
           + ++ +  + G G+ +LP
Sbjct: 229 FDAMCRMVMAGLGVGVLP 246


>gi|77457148|ref|YP_346653.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381151|gb|ABA72664.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 315

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 4/174 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF   AR  SFT  AE+LH++  ++S+QI  LE  +G +LF+R ARG+ L+ +G +L 
Sbjct: 13  LQVFSCAARHLSFTRCAEELHITPGAVSQQIRQLEERLGFRLFHRRARGVELSAEGQRLA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +E Y  ++     L    +  SG LR+ +        L   L      YPDIQ++L+
Sbjct: 73  ITVNEAYGSIDAELRRLDAGMI--SGILRVRSIPSFLSKWLTPRLPRLQQRYPDIQLRLV 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            ++  + +     D AI L        L+   L+   +    AP  L+  R PL
Sbjct: 131 AEDSSVPLHEGDFDLAIDLNDG-SYPGLLSTALLDEQIFPVCAPGLLRG-RPPL 182


>gi|146279828|ref|YP_001169986.1| hypothetical protein Rsph17025_3825 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558069|gb|ABP72681.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 311

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 28/293 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     +AR GSF  AA +L +S +++S  I+ LE  +G++LF R  R + L++ G    
Sbjct: 9   LEAVLAIARRGSFRAAALELGMSTTALSHTIARLEATLGVRLFNRTTRSVALSDAGHGFV 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +    ++       +  S +PSG LRI  +  LG   +   +  FL  YPD+Q+ L+
Sbjct: 69  ERVAPALAEIRAAMDMARSRSDRPSGLLRINASA-LGGREIAPLVLAFLRRYPDMQVDLV 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-----HA-YAAPHYLKNCREPL 181
            + + +DI     D  IR       + L+ R ++ + +     HA   AP +L     PL
Sbjct: 128 TEGRLVDIVAQGFDLGIR------PADLVPRDMIALPLGKPQRHAVVVAPGWLATRPAPL 181

Query: 182 SIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           +  +L   + I      G L     E       +D P G  R++  +     +I +  VL
Sbjct: 182 TPVDLPVQDCIRIRLPNGALFRWPFERGGEQLQID-PRG--RLTLDEA----AIARAAVL 234

Query: 238 -GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            G+GI    +  V ++     L+R++ED   P       YP     +    AF
Sbjct: 235 EGAGIGFFLEQDVAEDLAAGRLIRLLEDWTPPRPGFSLYYPGRRNPSAGFAAF 287


>gi|116493698|ref|YP_805432.1| fhu operon transcription regulator [Lactobacillus casei ATCC 334]
 gi|116103848|gb|ABJ68990.1| fhu operon transcription regulator [Lactobacillus casei ATCC 334]
          Length = 292

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 19/241 (7%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA +G  T AA+QLH++Q  +S Q+  LE E+G++LF R +RG+ LT  G +     
Sbjct: 9   FLAVAEAGQMTAAAKQLHMAQPPLSYQLKALEDELGVRLFERGSRGVRLTGSGQQFMTYA 68

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            ++   +   +   + S     G L +  T   G  L +  L+ F   YP ++  L  DN
Sbjct: 69  QQIVETVAAAENAARRSGEGEIGTLALGLTSSAGDVLPKQKLQAFNRRYPQVEFALYEDN 128

Query: 131 K--DID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               +D +  +  D AI +R P     L   +L + HM A AA    +     L+I +L 
Sbjct: 129 TYGILDKLRRNILDLAI-VRTPFNDDGLASCRLSSDHMIAVAAAS--QPLPATLTIPDLK 185

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +  LI    F  L      ++            P I+ L  +   + + +  +G G+AL+
Sbjct: 186 QQPLIVYRRFSSLFKTTFAEYGI---------TPIIAVL-CDDARTALHWAQMGMGVALV 235

Query: 245 P 245
           P
Sbjct: 236 P 236


>gi|89256845|ref|YP_514207.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. holarctica LVS]
 gi|167009260|ref|ZP_02274191.1| transcriptional regulator, LysR family protein [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254368125|ref|ZP_04984145.1| transcriptional regulator, lysR family [Francisella tularensis
           subsp. holarctica 257]
 gi|89144676|emb|CAJ80007.1| transcriptional regulator, LysR family [Francisella tularensis
           subsp. holarctica LVS]
 gi|134253935|gb|EBA53029.1| transcriptional regulator, lysR family [Francisella tularensis
           subsp. holarctica 257]
          Length = 306

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 12/242 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++F  V   G+ + A  + +LS +SIS +I+ LE     KL  R  R +  T+ G KL
Sbjct: 6   ELKLFVAVINYGNLSAAGREFYLSPASISNKINALEEYYQTKLLIRTTRKIEPTKAGEKL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++  +LE  Q ++Q +     G ++I    DLG+ ++   L EF    P+IQ  +
Sbjct: 66  YTTAIKLLEQLENLQEDIQNNENSAEGVIKITIPFDLGKQIILPILDEFKEKNPNIQYDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +  +    D AIR    +  S+ I +KLV  +    A+P YLK     + I   
Sbjct: 126 NLSDDVMSYNQFPFDIAIRYGN-LPDSNFIAKKLVDNYRMLCASPEYLK----KMDISNT 180

Query: 187 DKHNLITFGDLIPKCMEDFN----WLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSG 240
           D  N++   D I   +        +L   +    E  I  S +  N Y+S  Q C+ G+G
Sbjct: 181 DDINILQNCDFITLKINSNTIKKWYLIDQENNKHEVNIKPSYIVNNGYIS-RQMCLNGNG 239

Query: 241 IA 242
           I+
Sbjct: 240 IS 241


>gi|315182710|gb|ADT89623.1| Hypothetical transcription regulator [Vibrio furnissii NCTC 11218]
          Length = 327

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 140/296 (47%), Gaps = 17/296 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DK+  F VV ++GSF  AA++  +S ++ SR +  LE  + ++L  R  R L  T+ G  
Sbjct: 14  DKILFFCVVMQTGSFKAAAQRQGISAAAGSRWVKELEETLSVELIKRSTRQLAATQAGQL 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+   + +  +++T    +Q  S +  G++R+++T    +  L   + E++ L+P +  +
Sbjct: 74  LYERFAPMIGEIDTLCEAVQNLSEQQQGEIRLSSTPLFARQYLTKIVAEYMALHPKVHFK 133

Query: 126 LILDNKDID-ISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++  + D +++D+A  A+     +P++ S LI+++L++  ++  A+  YL     P +
Sbjct: 134 IFIEAGEFDPLTIDFAFRALATYDGEPVEDSLLIRKRLLSEPLYLCASERYLAEAGIPTT 193

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLG 238
            Q L  H  +    L    +    W    D    +P I      L+ ++   ++      
Sbjct: 194 PQALKAHRCLYARTL----LGGNRWCFERDE---QPEIVTIRDALECDNSEMLLHLAQQS 246

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +GIA LP  +V+    +  L  +M      SF ++  Y        +  +F+ ++ 
Sbjct: 247 AGIAYLPHSLVEPCLRSGELHHVMPQYRCASFDIFLYYRPRHPMPERCASFKRYLL 302


>gi|206579434|ref|YP_002238442.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206568492|gb|ACI10268.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 301

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 132/292 (45%), Gaps = 44/292 (15%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +++F  +  +GSF  AAE L + + ++++ +  LE E G++L  R  R L LT +G 
Sbjct: 4   FENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLTPEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSV--KP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           + +R +  +  + +    +L ES    +P  G+LR+   I   + L+  +L +F   +P+
Sbjct: 64  EFYRRSKPLLSQAD----DLLESFAPDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHPE 119

Query: 122 IQIQLILDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++I  +L + D+  D+  D  DC +R+   ++    + R L  + +   A+P YL     
Sbjct: 120 VEI--VLSSSDVRRDMLRDGLDCLLRVGD-LEDGDYVARSLGEVALTTCASPGYLARYGA 176

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-- 237
           P ++++L  H  +             NW+ +  R I   R    +    ++I    VL  
Sbjct: 177 PATLEDLQSHLAV-------------NWVNSSSRQIMPWRFQTAEGIRQIAIPGKLVLDN 223

Query: 238 -----GSGIA----------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
                 +G+A           L  YI  D+  LV I+ D   P   +   YP
Sbjct: 224 SEVFTAAGLAGLGMLQGMRFFLQPYI--DSGQLVEILPDFPAPRRPLSLLYP 273


>gi|171317086|ref|ZP_02906290.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097787|gb|EDT42611.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 317

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 93/209 (44%), Gaps = 20/209 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R  SFT AA  L L+QS++S+QI  LE  +G  LF RH RGL LT +G+ LH
Sbjct: 13  LRCFEAAGRLLSFTKAATALSLTQSAVSQQIRQLEQRLGYPLFVRHPRGLVLTPKGAVLH 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            VT+  +  L     +L +  V     L +     L    L   L +F   +PDI ++L 
Sbjct: 73  EVTASTFSDLNRALAKLAKPDV---ALLNVNCLPSLALQWLMPRLADFHQQHPDISVRL- 128

Query: 128 LDNKDIDISMDY-----ADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
               +ID    +      D AIR   P  I    +    L    + A A P YL+  R P
Sbjct: 129 --KAEIDTVARHNFQGGIDVAIRYLPPDDIPDDGV---ALFDEFLIAVATPEYLR--RHP 181

Query: 181 LSIQELDKHNLITFGDLIP--KCMEDFNW 207
            +I++     +    D+ P     ED  W
Sbjct: 182 PAIEKAWFERVTLLRDVEPWESAPEDIEW 210


>gi|91790379|ref|YP_551331.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699604|gb|ABE46433.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 352

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 3/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +  V+A + SFT AA +L +S++S S +IS LE   G+ L  R  R + LTE G +L 
Sbjct: 13  LHLLTVLAATRSFTEAARRLGVSKASASTRISELERAAGVSLVRRTTRSVGLTEAGQQLV 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 ++++  +   +++    P G +R+   + LG+  L   +  FL  +PDI I+L 
Sbjct: 73  NEMQPAFNRISESYTAVRDLVGTPRGLIRVTAPVALGRQHLAPCVAAFLKRFPDIHIELE 132

Query: 128 LDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ ++++ +  D AIR    P ++   +   L        A+P YL+    P    EL
Sbjct: 133 LTDRFVNLANEGFDLAIRHTNTPPETH--VAWVLCETRSFLLASPDYLQRRGTPSHPSEL 190

Query: 187 DKHNLITF 194
             H+ + +
Sbjct: 191 TSHDCLLY 198


>gi|56707634|ref|YP_169530.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670105|ref|YP_666662.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. tularensis FSC198]
 gi|115315233|ref|YP_763956.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156503019|ref|YP_001429084.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|224456703|ref|ZP_03665176.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254369728|ref|ZP_04985738.1| transcriptional regulator [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254370150|ref|ZP_04986156.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874453|ref|ZP_05247163.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|290954368|ref|ZP_06558989.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312189|ref|ZP_06802991.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. holarctica URFT1]
 gi|56604126|emb|CAG45125.1| transcriptional regulator, LysR family [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320438|emb|CAL08508.1| transcriptional regulator, LysR family [Francisella tularensis
           subsp. tularensis FSC198]
 gi|115130132|gb|ABI83319.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. holarctica OSU18]
 gi|151568394|gb|EDN34048.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156253622|gb|ABU62128.1| transcriptional regulator, LysR family protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|157122687|gb|EDO66816.1| transcriptional regulator [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254840452|gb|EET18888.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158790|gb|ADA78181.1| transcriptional regulator, LysR family protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 308

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 12/242 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++F  V   G+ + A  + +LS +SIS +I+ LE     KL  R  R +  T+ G KL
Sbjct: 6   ELKLFVAVINYGNLSAAGREFYLSPASISNKINALEEYYQTKLLIRTTRKIEPTKAGEKL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++  +LE  Q ++Q +     G ++I    DLG+ ++   L EF    P+IQ  +
Sbjct: 66  YTTAIKLLEQLENLQEDIQNNENSAEGVIKITIPFDLGKQIILPILDEFKEKNPNIQYDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +  +    D AIR    +  S+ I +KLV  +    A+P YLK     + I   
Sbjct: 126 NLSDDVMSYNQFPFDIAIRYGN-LPDSNFIAKKLVDNYRMLCASPEYLK----KMDISNT 180

Query: 187 DKHNLITFGDLIPKCMEDFN----WLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSG 240
           D  N++   D I   +        +L   +    E  I  S +  N Y+S  Q C+ G+G
Sbjct: 181 DDINILQNCDFITLKINSNTIKKWYLIDQENNKHEVNIKPSYIVNNGYIS-RQMCLNGNG 239

Query: 241 IA 242
           I+
Sbjct: 240 IS 241


>gi|109897762|ref|YP_661017.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109700043|gb|ABG39963.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 324

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 7/272 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+V   VA   S + AA QL +S S+ S  +  +ET++G +LF R  R + LT +G +  
Sbjct: 6   LQVLLKVAELHSISAAANQLDMSSSAASVALKRIETQLGAQLFVRTTRQIRLTSEGERYL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  +    L+  Q+ + E     SG++R+A + ++G+NL++  L   +  +  + ++L 
Sbjct: 66  PLCQQALDLLQQGQVLINEEQQSISGEVRMAVSSEMGRNLMRVLLNNLMRKHCAVTLRLH 125

Query: 128 LDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +   D   D  D A+R   +   +  +L   K+  I     AAP Y+    EP +  E
Sbjct: 126 VSDSRADFYRDGVDVALRAITKDAAKELNLYGFKICNIPHVLCAAPSYIAEHGEPQTPDE 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN + +   + + + D   L   D+       S   VN    + ++CV G GIA   
Sbjct: 186 LPQHNALLYK--LYEVVHDGWELYQNDQQYKIKMNSDRAVNDGDIVRRWCVDGEGIAKKS 243

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
              V  +     L R+M +   P   ++   P
Sbjct: 244 AIDVAQDLLAGQLKRLMPEYKIPLTQMWLVLP 275


>gi|332557459|ref|ZP_08411781.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332275171|gb|EGJ20486.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 297

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 21/190 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG---- 63
           L     +AR GSF  AA  L +S +++S  ++ LE  +G++LF+R  R + LTE G    
Sbjct: 9   LEAVLAIARRGSFRAAALDLGVSTTALSHTVARLEAGLGVRLFHRTTRSVALTEAGRDFV 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +++    +E+   +ET    ++     PSG LRI  ++  G+ +    L  FL  +P+++
Sbjct: 69  ARIAPALTEIRAAMET----VRSQRATPSGMLRINASVQAGRAVAPLVLA-FLRRHPEMR 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-----HA-YAAPHYLKNC 177
           + L+ + + +DI  +  D  IR       + L+ R ++ + +     HA  A+P +L   
Sbjct: 124 VDLVTEGRLVDIVAEGFDLGIR------PADLVPRDMIALPLGRPVRHAVVASPDWLVRH 177

Query: 178 REPLSIQELD 187
            EP S  +LD
Sbjct: 178 PEPRSPADLD 187


>gi|330445680|ref|ZP_08309332.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489871|dbj|GAA03829.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 316

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 6/244 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  S SF+ AA++L ++ S ISRQIS LE E+ ++L  R  R   LT  G + +
Sbjct: 13  IAAFVTVVESDSFSAAAKKLGMTPSGISRQISRLEKELQVQLIKRSTRSQALTHAGQEAY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +    +         + +  G+L IA+     + +LQ  L  F+  +P I++++ 
Sbjct: 73  QYGKNILQNAQDVVDLAANHTQEVEGQLTIASPKAFCRQVLQPLLLSFVEQHPKIKLKIE 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +K ID      D   +L    Q ++L+ + L T H+   A+P YL     P   ++L 
Sbjct: 133 VTDKPIDPIYHDVDVVFKLTNKPQ-ANLVAKNLATNHLVLCASPQYLTQRGMPQHPKQLV 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLPD 246
            H+ I  G+ I     D  W    D       ++   + ++  +     L   GIA+LP 
Sbjct: 192 DHDCIYLGETI----VDNQWRFKTDNEQVTVTVNGRYIVNHTEMRLEAALNHFGIAVLPF 247

Query: 247 YIVK 250
           ++ K
Sbjct: 248 FVAK 251


>gi|327481103|gb|AEA84413.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 318

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 4/196 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+ AA +  L+ S+++R++  LE  +G +LF R    +         
Sbjct: 9   QLELFIDVLECGSFSAAARRHGLTPSAVARRVDALEAALGCQLFSRSTHAVRAMPAALAF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L   + E       P G++RI      G+  L   L EFL  YP + IQL
Sbjct: 69  AERARRIVQELHLARAEATSLDSAPEGRIRIDAPAPFGRRHLAPALAEFLQAYPGVDIQL 128

Query: 127 ILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L +  +D+  ++    D  +R+  P+  + L+   L  +     A+P YL+    PL+ 
Sbjct: 129 RLIDSFVDLHGEHLGEVDLVLRI-GPLADTRLVATPLAPMVRIVCASPAYLERRGVPLTP 187

Query: 184 QELDKHNLITFGDLIP 199
           ++L +H+ + +  L P
Sbjct: 188 EQLPEHDGLDWDALAP 203


>gi|312797122|ref|YP_004030044.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312168897|emb|CBW75900.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 373

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 134/299 (44%), Gaps = 23/299 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA + SF  AA+QL++S + ++R I+ LE  +  +L  R  R ++LTE G    
Sbjct: 7   MRVFTRVAETQSFRRAAQQLNVSNALVTRSIATLEAHLNTRLINRTTRNVSLTEAGYVYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +L+  +  +     +P G LR+A +  LG  L+ G ++ F   +  I++ + 
Sbjct: 67  QGCRRLLEELDFIEATVVNGDDEPRGTLRVAASTSLGDELI-GLVEGFRQRHGRIRLHVT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   D  D  +        + L  + L +      A+P+YL     P +  +L 
Sbjct: 126 LGDQAVDALGDNYDVGLVQAAVAPGNGLSSQILSSCASVIVASPNYLLEHVAPQAPNDLP 185

Query: 188 KHNLITFGDLIPKCMEDFNWL--------ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +L+       +   D + L        A     + EP      VNS   +    V G 
Sbjct: 186 ALSLLA------QSHSDRSRLWRLRDAHGAEYQLAMPEP---VYVVNSAQMLRAAAVGGM 236

Query: 240 GIALLPDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIALLP  +V+ +     LV+++ D  ++    T+   YPE      K +AF  F+  +
Sbjct: 237 GIALLPQRVVERDVASGRLVQLLPDCEILESKTTLSVVYPERQYMAAKTRAFVEFVCAR 295


>gi|146339889|ref|YP_001204937.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146192695|emb|CAL76700.1| Putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 279

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 14/210 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR+   V   GS+  A ++L + ++++ R+++ +E  +G++LF     G+     
Sbjct: 1   MNWDDLRIIAAVRDGGSYAGAGKRLRIDETTVGRRLARIEAALGVRLF-EAVDGMRRPTP 59

Query: 63  GSK--LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             +  L  V +   H  + T+I   ++ V  SG+ RIA T  + + +L   L   L  +P
Sbjct: 60  ACETVLAHVEAMAQHAADITRIGAAQAGV--SGRFRIAATPGVAETILAPRLAAVLTAHP 117

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH----AYAAPHYLKN 176
            +++QL+  + ++  S   AD AIRLRKP +    I R L +I ++    A AAP  +  
Sbjct: 118 GLRLQLLTASGNVSFSHWQADFAIRLRKPEKGDFTITR-LGSIGLYLIEPASAAPSLV-- 174

Query: 177 CREPLSIQELDKHNLITFGDLI--PKCMED 204
           C  P  +  + +   +    LI   +C+ D
Sbjct: 175 CAYPDELDAIPEQQALKQRKLIDAARCVTD 204


>gi|284043752|ref|YP_003394092.1| LysR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283947973|gb|ADB50717.1| transcriptional regulator, LysR family [Conexibacter woesei DSM
           14684]
          Length = 315

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 68/128 (53%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +LRV   +AR GS T AA  LH SQ+++S  ++ LE EVG +L  R   G TL ++
Sbjct: 2   LDLRQLRVLIAIARHGSLTAAARALHYSQATVSHHLAALECEVGTRLVDRGRSGATLNDR 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     E+  +LE  + E+++ +   +G LR+ T    G  LL   +  F   +P +
Sbjct: 62  GRTLVLRAEEIVERLELAREEVRQLAGLEAGLLRVGTFSTAGARLLPRAIARFRDAHPGV 121

Query: 123 QIQLILDN 130
           Q+ L+ D 
Sbjct: 122 QVVLVEDE 129


>gi|86747267|ref|YP_483763.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570295|gb|ABD04852.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 300

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 64/115 (55%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  SGS   AA  L ++ S+ISRQI  +E E+ +KLF R+ARG+ LT+ G  L+
Sbjct: 7   IRYFREVTESGSIKQAAATLRIAPSAISRQIQAIEEEMSVKLFERNARGMALTDAGRLLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           R   E   +L+  + ++QE      G++R AT   +  N L   L E  + YP I
Sbjct: 67  RYAVENRSQLDGIRAKVQEFETMRRGQIRFATVEGMLANFLSNFLVELSVDYPGI 121


>gi|239833749|ref|ZP_04682077.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239821812|gb|EEQ93381.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 301

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 126/291 (43%), Gaps = 18/291 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D +RVF  V    SFT AAE L + +S+++  I  LE  +G +LF R  R +  T  G 
Sbjct: 4   FDAMRVFTRVLERRSFTLAAEDLGIPRSTVTDAIKQLERRLGTQLFLRTTRHVNPTLDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++  + +   +E  +     S   P G LR+     L ++ L   L  FL  Y +I+ 
Sbjct: 64  AYYQRCTAILADVEDAEGGF--SGAAPKGLLRVEVQGTLARHFLFPELPAFLEKYNEIEF 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  DC +R+   +Q S +I R++  +     A+P Y+     P    
Sbjct: 122 YMTEGDRFVDLVREGIDCVLRV-GSLQDSDMIARRVTVLDEITVASPSYISRFGHPQHPD 180

Query: 185 EL-DKHNLITF---GDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           EL + H +I F   G +    +E      L TV  P      + + VN+  S       G
Sbjct: 181 ELGEGHRMIGFRASGSITRMPLEFMIGGKLRTVSIP------ASVTVNAAESYTAAAREG 234

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            GI  +P Y       +  LV+I+         V   YP   + + +++ F
Sbjct: 235 LGIIQIPRYHAMKHIGDGKLVQILTAYPPTPSPVSVIYPRDRQLSPRVRVF 285


>gi|237810654|ref|YP_002895105.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|237506868|gb|ACQ99186.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 300

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 128/256 (50%), Gaps = 16/256 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLH----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L+    R+ SE++   E      Q+      G++R++     GQ ++   L  F  L
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQ----GRVRLSVPSGYGQLVMSNWLIAFKRL 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           YP I + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P +    
Sbjct: 117 YPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQ--NLVARDMGAVRYVACASPGFAATH 174

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCV 236
             P  + +L    +IT   ++ + +    +L      +  EP    L   ++L + Q  +
Sbjct: 175 GMPTELGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQAIL 230

Query: 237 LGSGIALLPDYIVKDN 252
            G G+ ++PDY+V D+
Sbjct: 231 AGLGVGIVPDYVVHDD 246


>gi|221195945|ref|ZP_03568992.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221202618|ref|ZP_03575637.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176552|gb|EEE08980.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221182499|gb|EEE14899.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 291

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FD D+LR F  VA +GS T AA  LHLSQS++S Q+  LE+  G+ LF R  RG+  T 
Sbjct: 3   GFDLDQLRTFAAVADAGSLTAAAPLLHLSQSTVSEQVRKLESRAGVPLFVRSKRGVEPTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L      +    E    EL+  ++K  G+LR+A T     + + G L      YP 
Sbjct: 63  AGARLLHHARRIVALNEAAFDELRGQAIK--GELRVAITDYYRTHEVAGMLARLRECYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRL 146
           + +  +   K  DI   YA   I L
Sbjct: 121 LSLH-VSAMKSADIEAAYAKGQIDL 144


>gi|152981625|ref|YP_001354995.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281702|gb|ABR90112.1| transcriptional regulator, lysR family [Janthinobacterium sp.
           Marseille]
          Length = 301

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 1/158 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L  R  R  ++TE G
Sbjct: 3   DLNDLYFFVQVVDHGGFAPAGRALGIPKSKLSRRIALLEERLGVRLIQRTTRQFSVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  Q  +  +  +P G +R++  I L    +   L +F+ L+P + 
Sbjct: 63  QTYYEHCKAMLVEAEAAQDVIDVTRAEPRGVVRLSCPITLLHAHVSSMLADFMALHPHVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKL 160
           + L   N+ +D+  +  D AIR+R  PIQ S L+ R L
Sbjct: 123 VHLEATNRRVDVVAEAMDIAIRVRPPPIQDSDLVMRVL 160


>gi|83716338|ref|YP_439645.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650163|gb|ABC34227.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 305

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 6/140 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 23  NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFPLFMRHARGLTLTAEGEQ 82

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +      +   +  F   +PD+ +Q
Sbjct: 83  LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MRWVLPRIMRFQREHPDLHVQ 137

Query: 126 LILDNK-DIDISMDYADCAI 144
           +    + D+D   +  D AI
Sbjct: 138 MTTTWRHDVDFQSEPFDAAI 157


>gi|288549651|ref|ZP_05967718.2| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317768|gb|EFC56706.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 308

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E   G +L  R  R LTLT  G K+ +
Sbjct: 12  QVYNRICELGSLSAAARALGISRPMVSRYLEQMEKWAGTRLVNRSTRKLTLTAAGEKVLQ 71

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            T  +     + +IE Q +   P+G LR+A        ++   L   L  YP ++I+L +
Sbjct: 72  KTRTLSQI--SQEIEDQSAKDSPTGTLRVACAHFTAMQIISPVLPGLLARYPQLRIELDV 129

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N  + +  +  D AIR+    +   +I R+L        A+P YL     P  ++EL +
Sbjct: 130 NNHPVSLVGERIDVAIRITDNPE-PGMIARRLGECDSVLCASPRYLAEAGTPQQLEELMQ 188

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI----MQYCVLGSGIALL 244
           HN + +     +     +W      P GE   + +  N   SI    M+  +   GIA+L
Sbjct: 189 HNCLHYSFFAGQ-----SW--RFVSPQGELVSTAVSGNLSASISSLLMEAAINHCGIAML 241

Query: 245 PDYIVKD 251
           P+   +D
Sbjct: 242 PEREARD 248


>gi|167844102|ref|ZP_02469610.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
          Length = 304

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 21/305 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLH----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L+    R+ SE++   E      Q+      G++R++     GQ ++   L  F  L
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQ----GRVRLSVPSGYGQLVMSNWLIAFKRL 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           YP I + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P +    
Sbjct: 117 YPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQ--NLVARDMGAVRYVACASPGFAATH 174

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCV 236
             P  + +L    +IT   ++ + +    +L      +  EP    L   ++L + Q  +
Sbjct: 175 GMPTELGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQAIL 230

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIF 291
            G G+ ++PDY+V D+     ++  +     ++     Y  Y     +T     F +F+ 
Sbjct: 231 AGLGVGIVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFML 290

Query: 292 LKARD 296
            +AR+
Sbjct: 291 EEARN 295


>gi|167462442|ref|ZP_02327531.1| hypothetical protein Plarl_07755 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322384526|ref|ZP_08058206.1| transcriptional regulator-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150581|gb|EFX44058.1| transcriptional regulator-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 303

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 26/302 (8%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   L+ F  V R  SFT AA+ LH++Q +IS+ I  +E E+G+ L  R  + + LT+
Sbjct: 6   ELDIRHLKYFIEVVRCKSFTKAADVLHITQPTISKMIKNIEDELGVVLLDRSTKQVMLTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +     ++    E   IEL  +     GK+R+     +G       + EF   YP+
Sbjct: 66  AGQSILLQAQQIVKSFENLSIELANTIHLKKGKIRMGLPPMVGSRFFPHIIGEFHHKYPN 125

Query: 122 IQIQLILDN-KDID--ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I+IQLI +  K ++  +   + D  + L  PI S +      V   +     P +    +
Sbjct: 126 IEIQLIEEGAKKVEEQVEEGHLDIGVVLL-PIPSGTFDSFPFVHEKLMVVVYPKHRLAGQ 184

Query: 179 EPLSIQELDKHNLITF------GDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
             +++++L+    I F       D IP +C+          R   +P++   + + +  I
Sbjct: 185 TVIALKKLEHEPFILFREGFVLHDRIPEECI----------RAGFQPKV-VYESSQWDFI 233

Query: 232 MQYCVLGSGIALLPDYIVKD-NPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRN 288
            +    G GI++LP+ I ++ NPN V I   ++ PS  +++   +P+    +  ++ + N
Sbjct: 234 SEMVAAGLGISMLPESICRELNPNRV-ITIPLVEPSIDWSLAMIWPKEQYISYAVREWIN 292

Query: 289 FI 290
           F+
Sbjct: 293 FV 294


>gi|73542598|ref|YP_297118.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120011|gb|AAZ62274.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 313

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 6/174 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R  SFT AAE L+L+QS++S+QI  LE  +G  LF R  R L LT QG  L 
Sbjct: 11  LRCFEAAGRLLSFTKAAESLNLTQSAVSQQIRHLEDRLGYVLFVRQPRSLKLTPQGEVLF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+   H ++ T   L      P+  L++          L   L +F    PD+ ++L 
Sbjct: 71  ETTTRALHDIQQTIQRLG----MPNAPLQVNCLPSFALQWLMPRLTDFHREQPDVSVRLK 126

Query: 128 LDNKDID-ISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + + +D  SMD  D  + +R  P++ S L    L+  ++   A P YL   RE
Sbjct: 127 AEFQALDRQSMDTEDIDVAVRYDPVRYSRLHADVLLDEYLIPVATPEYLAEHRE 180


>gi|325272040|ref|ZP_08138482.1| transcription regulator protein [Pseudomonas sp. TJI-51]
 gi|324102828|gb|EGC00233.1| transcription regulator protein [Pseudomonas sp. TJI-51]
          Length = 230

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 3/181 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F      GSF+ AA+ L+LS   + +Q+  LE  +G+ L +R  R  +LT+ G   
Sbjct: 6   QMATFVKTVELGSFSAAADDLNLSPQLVGKQVKMLEQHLGVSLLHRTTRRQSLTDFGRAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   +++ +     +   PSG+LRI   +  G   L   L E+++ YP + + L
Sbjct: 66  YPRAKLILADMQSAESLAALTRGTPSGRLRINAPVTFGIRTLSPRLLEYMVRYPQVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L N+ +DI  D  D   R+ + + SS L    L    M   AAP YL   R P  I   
Sbjct: 126 TLSNELVDIVDDGYDVVFRIGE-LASSGLKALPLEPYQMVLCAAPSYL--ARRPPIINPW 182

Query: 187 D 187
           D
Sbjct: 183 D 183


>gi|229590713|ref|YP_002872832.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
 gi|229362579|emb|CAY49487.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
          Length = 293

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 122/286 (42%), Gaps = 10/286 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF      GS + AA  L +S++  +R I  +E    I+L +R  R L+LT  G +L  
Sbjct: 8   KVFLETVARGSISAAATHLGMSRAMATRYIGLMEEWAEIRLLHRTTRKLSLTAAGEQLLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
           +  E+       ++   ++   P G LR+       +  L   L EFL LYP + I L +
Sbjct: 68  LCKELVALSTDVKVLGSQAESAPKGLLRVTAPSIFAEYCLTDLLMEFLQLYPAVAIDLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +   +++ +  D AIR+   +    +I +KL  +     A+P YL+    P  +++L  
Sbjct: 128 ADGMTNLAQEGIDLAIRVTDNLD-PGVIAKKLGEVDSFICASPAYLQRHGVPGDVRDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           HN +T+            W   VD   +  P       N    I++  + G+G+++LP +
Sbjct: 187 HNCLTYAYYGRSL-----WHFIVDGENVSVPVTGSFSTNEASIIVRAALSGTGVSMLPHF 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                     L+R+  +       ++  Y    +    LK   +F+
Sbjct: 242 AAGQAIKEGRLIRLFPEYRIKPIGIHAVYLSRQRMPNALKTLLDFL 287


>gi|209521264|ref|ZP_03269984.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209498306|gb|EDZ98441.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 327

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 141/299 (47%), Gaps = 32/299 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++ F   AR  SF+ AA++L ++  ++S QI  LE E+G+ LF R  + + LTE G  
Sbjct: 10  NAIKAFEAAARHESFSRAADELFVTHGAVSHQIRALEAELGVSLFARDGKRVRLTETG-- 67

Query: 66  LHRVTSEVYHKLETTQIELQES--SVKPSGKLR---IATTIDLGQNLLQGNLKEFLLLYP 120
             R  ++V   L    +EL ++  S++   + R   I+         +   +  F+  +P
Sbjct: 68  -RRYATQVRSAL----MELADATRSIRAGDRERRLVISMLSSFAARWVTPRIGSFIEAHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
              ++L+  N   D + D  D AIR    + P   S L+   L  I   A  +P++    
Sbjct: 123 QWDLELLTTNALTDFARDDVDVAIRFGFGKYPGLHSELL---LDEIFFPA-CSPNF-NGG 177

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           + P +  +L K  L+   D + +    F+     D P  EP+   L  +S  +++Q  V 
Sbjct: 178 KLPQTPADLAKFPLLRSDDELWRPW--FDAAGLTDWP--EPKRGVLYQDSS-NLLQAAVD 232

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYF--CYPEALKNTGKLKAFRNFIF 291
           G G+AL    +         LVR+  DV  PS   Y+  C P+ L+ T ++KAFR+++F
Sbjct: 233 GQGVALTRRSLAMHEIAAGRLVRLF-DVDGPSPWQYYFVCLPQMLE-TARVKAFRDWLF 289


>gi|119776350|ref|YP_929090.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119768850|gb|ABM01421.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 319

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA +GS + AA +L ++ +S S  I  LE ++G  LF R  R L L+  G +  
Sbjct: 6   LALFVRVAEAGSISAAATELDMTPASASAAIKRLEKQLGSPLFIRTTRSLRLSHAGERYL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E    LE  ++ L        G LRI+ + D G+N+    L E +  +P +++QL 
Sbjct: 66  GHCREALSALELGRMALSSERGTVEGTLRISVSSDFGRNIFLPWLDELMEQHPGLEVQLE 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +K   +     D A+R   P Q S  +   L  +     A+P YL     P +  EL 
Sbjct: 126 LGDKVSSLFRSNIDVALRYGMP-QDSEAVAFSLGHLSRQLAASPRYLAREGTPTTPAELA 184

Query: 188 KHNLITF 194
            H  + +
Sbjct: 185 AHQCLLY 191


>gi|326385549|ref|ZP_08207183.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209883|gb|EGD60666.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 283

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 124/283 (43%), Gaps = 10/283 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR F     +GS + AA  L +  ++++R+I+ LE  + ++L  R  R L LT +
Sbjct: 1   MEWDDLRHFSAFVAAGSLSGAARTLGIEHATVARRIAALEARLKLRLIDRRGRRLVLTGE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K+  + + +   +   +     +    +G++ I+       ++L   L      +P +
Sbjct: 61  GEKVAALAARMAETMRAVERLADGARSDLAGEVTISAPPAYAAHVLAPRLVPLRARHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+ +     +    AD A+RL +P ++  L   ++ TI  H +AAP YL        
Sbjct: 121 TLRLLGELHAASLDRREADIAVRLSRP-EAGELTAARIGTIAFHLHAAPAYLAATPR--- 176

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               ++   I    ++    +       VD    GE   S LQ +S          G G+
Sbjct: 177 ----EEWTFIGSAGVMAGSAQQAGLAKFVDSHGSGESGFS-LQSDSVDIQAALAAAGGGV 231

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           A+LPD++    P+LVR+ +     +  V+      +KN   ++
Sbjct: 232 AILPDFLTASRPDLVRVPDQGPPITREVWLAIHTDMKNAAPVR 274


>gi|226946470|ref|YP_002801543.1| transcriptinal regulator, LysR family [Azotobacter vinelandii DJ]
 gi|226721397|gb|ACO80568.1| Transcriptinal regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 301

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 116/248 (46%), Gaps = 8/248 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR F  +A    F  AAE LH++Q  +SRQIS LE ++G+ LF RH+R + LT  G   
Sbjct: 6   QLRYFMALAEHLHFGKAAESLHITQPPLSRQISALEADLGVVLFSRHSRSVELTAAGRDF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +       +L+      + S+    G+LR++ T+     LL   LK +   YPD+ + L
Sbjct: 66  QQHAKTALAELDLAIRSTRASARGERGELRVSFTMVAAWILLPELLKAYSDAYPDVSLAL 125

Query: 127 --ILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAY-AAPHYLKNCREPLS 182
             +L  +D+  +++  +  I L  P   S SL  R L    + A   A H L    E  S
Sbjct: 126 NEVLP-RDLGPALERGEADIALTFPSSGSKSLCYRALRREPLCAVLPASHPLAAATE-FS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I  L     ITF       + +   ++   R   EP+I  L+ +   +I+     G G++
Sbjct: 184 IAALADEPFITFPRQTAPALHE-AVMSCCRRAGFEPKIR-LETHLQQTIVNLVAEGLGVS 241

Query: 243 LLPDYIVK 250
           ++P  + K
Sbjct: 242 VVPGSMRK 249


>gi|261408388|ref|YP_003244629.1| LysR family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|329929367|ref|ZP_08283115.1| HTH-type transcriptional regulator GltC [Paenibacillus sp. HGF5]
 gi|261284851|gb|ACX66822.1| transcriptional regulator, LysR family [Paenibacillus sp. Y412MC10]
 gi|328936454|gb|EGG32899.1| HTH-type transcriptional regulator GltC [Paenibacillus sp. HGF5]
          Length = 306

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 130/291 (44%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F  VA+    T AAE+LH++QS++SRQI  LE E+G+ LF +  R L LT  G   
Sbjct: 5   QLQYFVKVAQKEHVTQAAEELHVAQSAVSRQIHQLEEELGVNLFMQKGRNLQLTPVGQLF 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI-- 124
            +    +   L+   +E+ E      G++RI     LG +L+   + EF   YP+++   
Sbjct: 65  CKRVESIMKDLDRAVVEIHEFLDPEQGEIRIGFPHSLGIHLIPSIVAEFRKKYPNVKFRF 124

Query: 125 -QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            Q +      D+     D A     P +   +    ++T  + A   P++     + + +
Sbjct: 125 KQGMFPTLIRDVVGAEVDLAFVSPFPDRHDQVDGDIVLTEELFAILPPNHPLAGEQSIKL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +   + F       +    W A ++     P+I+  +     +I      G G++L
Sbjct: 185 EQLKEERFVLFSKGY--SLRPIVWHACLEAGF-TPKIA-FEGEETDTIRGLVAAGMGVSL 240

Query: 244 LPDY-IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+  + + N   P  VRI E  +T S  +     E L      +AFR F+
Sbjct: 241 LPEMALFQTNPLQPARVRISEPKVTRSIGLIHRADEKLPPVA--QAFRAFL 289


>gi|167717873|ref|ZP_02401109.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 305

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 128/256 (50%), Gaps = 16/256 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLH----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L+    R+ SE++   E      Q+      G++R++     GQ ++   L  F  L
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQ----GRVRLSVPSGYGQLVMSNWLIAFKRL 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           YP I + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P +    
Sbjct: 117 YPGIVLDVVFENRIEDLMRDEVDIAVRVMSEPPQ--NLVARDMGAVRYVACASPGFAATH 174

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCV 236
             P  + +L    +IT   ++ + +    +L      +  EP    L   ++L + Q  +
Sbjct: 175 GMPTELGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQAIL 230

Query: 237 LGSGIALLPDYIVKDN 252
            G G+ ++PDY+V D+
Sbjct: 231 AGLGVGIVPDYVVHDD 246


>gi|115359495|ref|YP_776633.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284783|gb|ABI90299.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 314

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 136/280 (48%), Gaps = 16/280 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDSGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +ET + ++      PSG+LR+        +++   +  +   +P
Sbjct: 61  EEGRAFLQDARAIIESVETAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVHGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R++    +   A+P YL+   +P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGNSRLRILASPAYLEAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RIS-CLQVNSYLSIMQYCVLG 238
             +++L +H L+ F    P+ +  +  L       GEP RI   +  +S  ++ Q  + G
Sbjct: 180 RKVEDLARHTLLGFTQ--PESLNVWPILGA----DGEPCRIEPAIWSSSGETLRQLALEG 233

Query: 239 SGIALLPDYIVKDNPNLVRIME-------DVITPSFTVYF 271
           +G+  L D++   +    R+++       DV  P   VY+
Sbjct: 234 AGVVCLSDFMTAQDREAGRLVQVLARQTLDVEQPINAVYY 273


>gi|134291339|ref|YP_001115108.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134528|gb|ABO58853.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 311

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 6/190 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  VAR GSF  AA +LH++  ++ +QI  LE   G  LF R  RG+ LT+ G+ 
Sbjct: 18  NALRAFDAVARHGSFAGAAVELHVTHWAVGKQIRLLEDWFGRPLFDRRPRGVVLTDDGAA 77

Query: 66  LHRVTSEVYHKLETTQIELQE--SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L    S  + +L T  + L++  S+ + SG +R+   +      L   L +F   YPDI 
Sbjct: 78  LLGDVSSAFERLGTAAVRLRQHASTQRISGVVRVNVPMSFAFCWLLPRLADFHARYPDID 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-S 182
           +++   ++ +    D  D  +R     + +S++ R L+         P  L+    P+ S
Sbjct: 138 VRVSTTSRKLRYVADAFDIGVR-SGAEEGASVVSRSLMADLRVPACDPALLRQ--HPIQS 194

Query: 183 IQELDKHNLI 192
           + +L  H L+
Sbjct: 195 VTDLRHHTLL 204


>gi|289627364|ref|ZP_06460318.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330869524|gb|EGH04233.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 302

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 132/300 (44%), Gaps = 27/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AA +L L+Q ++ RQI GLE  +G++LF R  RG+ LTE G    R  
Sbjct: 14  FEAAARHESFTKAAHELSLTQGAVCRQIGGLEEFLGVELFRRSRRGVKLTEAGLSYSRRV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL---- 126
           ++    +E   + +     + +  + +A     G   L   LK+F   +PD+ + L    
Sbjct: 74  AQQLDAVERDTLSVM--GQQGANAIELAVVPTFGTQWLLPRLKDFQHKHPDVTVHLTNRT 131

Query: 127 ---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +  + D D ++ + D           S     +L+  +     +P +L N R+ L  
Sbjct: 132 RPFLFADTDFDAAIYFGDA--------DWSGTQSHRLMGENSMPVCSPSFL-NGRDHLQA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            E+ +  L+          + FN     V R +  PR     +     + Q  +   G+A
Sbjct: 183 SEVAELPLLQQTTRPYAWRQWFNAQGMDVARDMTGPRYELFSM-----LAQAAMHDMGVA 237

Query: 243 LLPDYIVKDNPNLVR-IMEDVIT-PSFTVY-FCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           L+P ++++   +  R ++ +V + P    Y    PE    +  L AFR+++  +AR+++ 
Sbjct: 238 LIPPFLIQRELHEKRLVIANVCSLPGSKAYHLMIPERKVESASLSAFRDWLVAQARNYQL 297


>gi|323524924|ref|YP_004227077.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323381926|gb|ADX54017.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 309

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 12/254 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+  L++F  + R GSF  AA +   + S++S  +  LE  +G KL  R +R ++ TE 
Sbjct: 7   IDFADLKLFLAIVRCGSFRLAAVEAGQTPSAVSHAMRRLEDRLGAKLLNRTSRAVSPTEA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     + ++++ +             G LR+    D    L+   L EF  + P +
Sbjct: 67  GLDLASRLQDGFNQIGSALESFAAPGTARLGSLRLNVFADAAHLLIAPALPEFARVCPGV 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ +++DN+ IDI  +  D  IR    +    +             A+P YLK    P  
Sbjct: 127 QLTVVVDNRPIDIVAEGYDAGIRYGHHVPEDMIAVPLTRPQRWVMVASPAYLKKHGTPRQ 186

Query: 183 IQELDKHNLIT--FGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           + EL  H  +    GD        + W   +A   + I  P +  + +N  ++ +  C  
Sbjct: 187 LGELANHQCLQLLLGD-----NSSYRWEVDVAGKKKSIRVPGV--ITINDTVTTISACKA 239

Query: 238 GSGIALLPDYIVKD 251
           G GIA + +  + D
Sbjct: 240 GMGIAYVLEARIAD 253


>gi|197303654|ref|ZP_03168691.1| hypothetical protein RUMLAC_02381 [Ruminococcus lactaris ATCC
           29176]
 gi|197297174|gb|EDY31737.1| hypothetical protein RUMLAC_02381 [Ruminococcus lactaris ATCC
           29176]
          Length = 298

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 18/259 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D  R+FY VA   SF+ AA+ L  +Q +I+R I+ LE ++G KLF R  RG+ LT
Sbjct: 1   MEITYDYYRIFYYVATYQSFSKAAKILMSNQPNITRFINNLENQLGCKLFVRSNRGVQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G KL++  S  Y  L   ++EL        G + I+ +      LL   L++F   YP
Sbjct: 61  QEGRKLYQHVSVAYQHLHMAEVELMNEQRMDQGYITISASEIALHLLLLPVLEKFHKNYP 120

Query: 121 DIQIQLILDN--------KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
            I+I+L+  +        K+  + +      + ++KP++S+ L++ + + +   A     
Sbjct: 121 GIRIRLLNHSTPQAVQAVKEGAVDLAVVTTPLTVKKPLRSAVLMEFREILVGSQATVQNT 180

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
            +K       ++++    LI  G         ++        + EP I   +V +   I+
Sbjct: 181 KIKR------LEDIRNEPLICLGRK-STTYSFYSKFFLEHDVVLEPDI---EVETMDLIL 230

Query: 233 QYCVLGSGIALLPDYIVKD 251
              + G GI  LPD  VKD
Sbjct: 231 PLILNGLGIGFLPDLYVKD 249


>gi|327481837|gb|AEA85147.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 302

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 119/287 (41%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F +VA  GSF  AA + +++   + R++  LE  +G+KL +R  RGL+LT+ G +  
Sbjct: 7   LRSFVLVADCGSFAAAAHKENVTPVVMGRRLDALERHLGVKLMHRSTRGLSLTDLGEQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +     +        G L ++     G+  +  +   F   YPD+Q+   
Sbjct: 67  ERARGLLKDFDEVDASISHDRTSVRGHLVVSAPAAFGRRHIGPHAPAFQARYPDLQLSFN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+     D  IR+ + +   + +  +L         +P Y      P +++EL 
Sbjct: 127 FTDSVVDLVRHGYDMGIRIGE-VTDPNYVAVRLFPNRRVVCGSPEYFARHGTPTTLEELT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +HN + F     +  +   W    D R +       L  N    +  +   G GI     
Sbjct: 186 EHNCLAFN---LQGGQQRGWTFLRDGRQVAIRVAGNLDCNDGELLFDWVKQGLGIGWRST 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + ++       LV ++++   P++ +   YP+      K++ F +++
Sbjct: 243 WEIQAELKRGELVTVLDEYALPAYDIQAVYPQQRYLPAKVRFFIDYL 289


>gi|261380901|ref|ZP_05985474.1| transcriptional regulator, LysR family [Neisseria subflava NJ9703]
 gi|284796149|gb|EFC51496.1| transcriptional regulator, LysR family [Neisseria subflava NJ9703]
          Length = 212

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 91/189 (48%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L  F  +A++ SF  A + L +S S++S  +  LE  + ++LF R  R ++LTE G
Sbjct: 3   NFNELNYFLTLAQTQSFVKAGQLLGISSSALSHSMKNLEMRLNLRLFNRTTRNVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +Y  +      L +    PSG +RI       + +L   LK  L  YP I+
Sbjct: 63  QQLFDQLFPLYQAINQEVDALNDFLNTPSGLIRINAPAMAAEAVLYPKLKPILNQYPKIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++D++  DI  +  D  +RL   +    +         M   A+P YL       +I
Sbjct: 123 LEIVVDDRWADIVKEGFDMGVRLGNKVAKEMIAVPISAPFKMVLVASPDYLAQYGSLKNI 182

Query: 184 QELDKHNLI 192
            +L +H LI
Sbjct: 183 DDLQQHRLI 191


>gi|226953707|ref|ZP_03824171.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|226835579|gb|EEH67962.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
          Length = 294

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 21/266 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L++F +VA   SF  AA QL L +S+++  I  LE E  + LFYR  R + LT +GS 
Sbjct: 5   ERLKIFCLVAEKQSFAQAALQLGLPRSNVTYAIQALEKEYEVLLFYRTTRKVALTHEGSL 64

Query: 66  LHRVTSEVYHKLE-----TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +     +  +L+      TQ+  QE      GK+ I     L   +L  +L  F   YP
Sbjct: 65  FYEEAIRLVAQLKELNRFKTQVRSQE------GKISIGMPKRLATQVLIPHLSAFYQRYP 118

Query: 121 DIQIQLILDNKDI-DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +++ LI  + D  ++     DC +R+ + +Q   L+ R +    +   A+P YL    E
Sbjct: 119 KVKV-LINGSDDFSNLIEQQLDCVVRVGQ-VQDEYLLIRPIKQTQIWTLASPQYLAEYGE 176

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P     L++H  + +   + K   + + LA  +  I  P    L V +  + +Q  + G 
Sbjct: 177 PKHFDALERHFAVDYH--VAKHYRERSELAFQNHRINMP--YRLLVENTEAYIQAGLTGL 232

Query: 240 GIALLPDYIVK---DNPNLVRIMEDV 262
           G+  +P++  K   +   L R+  D+
Sbjct: 233 GLIQIPEFDAKTYVEQGQLQRLFSDI 258


>gi|222086532|ref|YP_002545066.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221723980|gb|ACM27136.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 308

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 135/304 (44%), Gaps = 24/304 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  +  +G F  AAE++ L+Q++IS Q++ LE  +G +LF R   G +LT  G++LH
Sbjct: 12  LQAFCAIVETGGFGRAAERMGLTQTAISHQLAQLEGWIGGRLFDRGRSGASLTPLGARLH 71

Query: 68  RVTSEVYHKLETTQIELQES-SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               E   +LE    + + S SV+    L ++ T +     L   L +F   YPDI++++
Sbjct: 72  PSIVETVSQLEKALYQARASVSVR---ALGLSVTPEFSSQWLASRLPDFCQRYPDIELKM 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +  +  D      D AI L +    + L+  +L+       ++P   K      +I+  
Sbjct: 129 AVGYQRPDFGPGGVDLAIWLGR--ADAELVLEELLIDQEFVVSSPGLSKQLPNRNAIR-- 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN----------SYLSIMQYCV 236
               L+ +  +    ++   W   V     +  +S   +           S+  +++ C 
Sbjct: 185 -AAPLLRYAGMRHTVLDWQRWYEQVTSHDEDGDVSSFDIGQAVEAGPLFESFADMLKACR 243

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY-PEALKNTGKLKAFRNFIFL 292
            G G AL+   +V +   +  LVR   +V   + +    Y P AL+N      FRN++  
Sbjct: 244 DGLGFALVRSSLVAEDIADGKLVRCFVEVQPAAVSYNLVYPPNALQNP-SAALFRNWLIS 302

Query: 293 KARD 296
           +A +
Sbjct: 303 QANE 306


>gi|49084320|gb|AAT51191.1| PA2681 [synthetic construct]
          Length = 310

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 1/185 (0%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +L     +
Sbjct: 17  ALAEHGSFAAAGRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGERLASRFRQ 76

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
               L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++     + 
Sbjct: 77  AVDLLDEAKHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVVLETDYSERF 136

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           +DI  +  D AIR+ + +  S L+ R+L        AAP YLK    P    +L  HN +
Sbjct: 137 VDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLKRHGVPRIPADLAAHNCL 195

Query: 193 TFGDL 197
            F  L
Sbjct: 196 GFSGL 200


>gi|260773993|ref|ZP_05882908.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260610954|gb|EEX36158.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 311

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 124/257 (48%), Gaps = 30/257 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F +V   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G    
Sbjct: 13  LATFILVVNEGSFTAAAHKLGVTPSALSKLITRLELALNVKLFERTTRKLMITQAG---Q 69

Query: 68  RVTSEVYHKLETTQ--IELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           RV  +    +   Q  ++L ++   +PSG L +A       ++LQ  +  FL  YP IQ+
Sbjct: 70  RVYDQCLVMINAAQQAVDLSDADHSEPSGSLTVAAPEAFLHSVLQPFVLPFLKQYPYIQL 129

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L   + +ID+     D A +L  KP    +L+ R+L   ++   A+P YL+    P   
Sbjct: 130 KLRAADGEIDLFRHNIDVAFKLTDKP--DENLVMRELCKTNLVLCASPDYLQQRGVPAHP 187

Query: 184 QELDKHNLITFG--------DLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQY 234
            EL +H+ +           D + +  ++F+ +A   R  + + +I    V S       
Sbjct: 188 TELIEHDCLYLAETERDHIWDFLKE--DEFHTVAVTGRYAVNQSQIRLNAVKS------- 238

Query: 235 CVLGSGIALLPDYIVKD 251
              G GI +  D++V+D
Sbjct: 239 ---GLGIGIFHDFVVQD 252


>gi|229091407|ref|ZP_04222621.1| Transcriptional regulator, LysR [Bacillus cereus Rock3-42]
 gi|228691949|gb|EEL45692.1| Transcriptional regulator, LysR [Bacillus cereus Rock3-42]
          Length = 300

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 130/277 (46%), Gaps = 24/277 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISIPLYKSELIIVVPTGHQLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
              +SI EL  + LI         +LI    + FN+     +PI       L++++  S+
Sbjct: 181 HNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVIT 264
           +Q    G GI +LP    D++   N   ++I    +T
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENPTLT 267


>gi|171319318|ref|ZP_02908430.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095463|gb|EDT40431.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 300

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 131/293 (44%), Gaps = 21/293 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF RH RG+ LT+ G  
Sbjct: 9   NSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGRPLFERHNRGVELTDAGRA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGK---LRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                +EV    +  +I L  +     G+   LR++         L   L  F + +P I
Sbjct: 69  ---YLAEVGASFD--RIALATAQHFGPGQQRVLRVSAPATFSLRWLVPKLSSFQVAHPAI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN--CREP 180
           +++L   N+ I+   D  D  +R   P      +  + ++       AP  L+    R P
Sbjct: 124 EVRLSTSNEPIEKLRDKVDLIVR-GGPQAIDGYVAEEFLSEVRLPVCAPKLLEGRPLRTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +      +  T+  + P+      WLA        PR S    + YL+ +Q  + G G
Sbjct: 183 ADLAGFTLLHAATYPGMWPE------WLAAAGHANLVPRHSLTLEHFYLT-LQGALDGLG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV--YFCYPEALKNTGK-LKAFRNFI 290
           +A+ P  +V D+    R+++    P+     YF Y  A +   + ++AF++++
Sbjct: 236 VAMGPIALVADDIAEGRLVQPFSEPALPPWRYFTYVAAARAEDEAVRAFKDWL 288


>gi|53729002|ref|ZP_00134372.2| COG0583: Transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 295

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 20/301 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  G
Sbjct: 2   DLNNLRLFVTVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTALG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+     +   L     +      + SG LRI+T        +   + EF   YP ++
Sbjct: 62  LQLYEKVYLILDNLTQATQDFIGEQQELSGYLRISTVS--ACEPIWAAIAEFQAEYPQVK 119

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +     ++ +D+  D  D A R+   + + ++I RK++ ++    A P +L     P + 
Sbjct: 120 VHCQATDRVLDLVEDGIDIAFRMGD-LHTENVIARKMMDLNAVLVAHPDFLARHGTPKTP 178

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240
           Q+L       +     K        AT+   +GE  +    +   N   +I         
Sbjct: 179 QDLTALPFACWARAGQKS-------ATLQ--LGEQAVKIEPIFTSNDVYAIAHQAKNAHA 229

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           I  LPDY+ +   +   LV +M D  T ++ ++  YP     +  +K F  F   FL  R
Sbjct: 230 ICQLPDYMAQELTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGFCERFLAER 289

Query: 296 D 296
           +
Sbjct: 290 E 290


>gi|299771136|ref|YP_003733162.1| HTH-type transcriptional regulator perR (Peroxide resistance
           proteinperR) [Acinetobacter sp. DR1]
 gi|298701224|gb|ADI91789.1| HTH-type transcriptional regulator perR (Peroxide resistance
           proteinperR) [Acinetobacter sp. DR1]
          Length = 301

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 133/294 (45%), Gaps = 14/294 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   AR G+   AAE L+L+ S++S QI+ LE  +G  LF R ARG+TLT  G +  
Sbjct: 17  LQAFEQTARFGNVAKAAEHLNLTPSAVSHQIAKLEEMIGQNLFIRGARGVTLTPSGERYF 76

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  + + H L     +  + S  P   L I ++   G   L   L+ F   +P IQ+ L 
Sbjct: 77  QDVTTILHNLMLATEKAADKS--PKDSLYIHSSPSFGLLWLLPRLESFKEKFPMIQVNLS 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186
              +++  + D  D  IR   P  +   I R +    +   A+P  L+  R P++  Q+L
Sbjct: 135 CSYENLHFTRDKIDIDIRHGLPNWTGVEI-RTIRNEKLEVLASPKLLE--RSPVNKPQDL 191

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            K  LI     +    +   W A     I E   +     SY+S ++    G G  L  +
Sbjct: 192 LKKELILSRSTLVTWPQ---WFAHQGLSIPEFPYTLSFDRSYMS-LEAATHGLGFVLESN 247

Query: 247 YIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            + +   D+  LVR+  D ++ P    +  YP   +   K++ F N+I+ +  D
Sbjct: 248 LLTQNYLDSGKLVRVFADELSIPISAHHLVYPRTHQFIPKIELFLNWIYDELAD 301


>gi|156973686|ref|YP_001444593.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156525280|gb|ABU70366.1| hypothetical protein VIBHAR_01389 [Vibrio harveyi ATCC BAA-1116]
          Length = 306

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 17/290 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  + +  +FT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   +  
Sbjct: 3   IFSALIKHKNFTAAAKSLGVSVSHVSKQLSQLEASLGIKLVQRTTRSFTPTEAGQTFYHH 62

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V   + +  +E++    + +G +R+  +   G   +   ++E    YP +Q+++ L 
Sbjct: 63  CEQVVQAVSSATLEMESQRDEVAGLVRLGLSQSFGTLHIIPAIQELREKYPQLQVEVHLF 122

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+  +  D  I   + +    + QR L        A+P YL     P    +L +H
Sbjct: 123 DYKVDMLEEGLDLWITNNEHLPEGYIAQR-LADCQFVVAASPDYLLKFDTPTEPNDLSQH 181

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLGSGIALL 244
           N + +         D+   A  +R   E  ++     +Y      ++    + G GIA L
Sbjct: 182 NCLIYRSW----ERDYTSWAFTNR---EQELNVKVSGNYSVDLAEAVRDAAIAGWGIAYL 234

Query: 245 PDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y++ D   +  L++++ D   + S   Y  YP       K+ A   FI
Sbjct: 235 ATYLLGDEFRSGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVIEFI 284


>gi|26987434|ref|NP_742859.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24982094|gb|AAN66323.1|AE016260_9 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 305

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 122/304 (40%), Gaps = 42/304 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  R F + A++ SF  AAE LH++  ++SRQI  LE  +G++LF R  R + LT  G  
Sbjct: 7   NAFRYFDIAAQTESFVRAAEHLHVTHGAVSRQIRLLEESLGVELFERRNRAIFLTPAGRA 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   T  ++ +LE     LQ+ +      L    TI +    L   L  F   +PD+Q+ 
Sbjct: 67  LQGTTQAIFEQLEGAVQRLQQQARDNVLVLSCEPTIAM--RWLIPRLPRFHATHPDLQLH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+     +D +    D AIR       + L  +K+            ++     P +   
Sbjct: 125 LVAAGGPLDFARSGVDLAIRRDDFHWDNQLYSQKICD---------EWIGPVCHPAACAR 175

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISCLQVNS---------YLSIMQ 233
           LD   L                L +  RP   P   R+S  Q            YLSI Q
Sbjct: 176 LDGQRL----------------LHSTTRPAAWPTWLRLSGQQARHCERSDYEHFYLSI-Q 218

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
               G G+A+    +V+D  +  ++      +      +   P+ L ++GK + F  +I 
Sbjct: 219 AASAGLGLAIASALMVRDELDSGQLQAPFGFVRDGSAYHLLSPQPLADSGKRQRFAEWIM 278

Query: 292 LKAR 295
            + R
Sbjct: 279 DECR 282


>gi|330887297|gb|EGH20350.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 191

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 95/189 (50%), Gaps = 2/189 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + +S +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRSADLGSLSAAARVMDMSAAVASAALKRIERQLGARLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  L  S  +  G L+++   DLG+N+L   L EF   +P + +
Sbjct: 64  GFLEYARAALGSLEEGRRLLASSQDRCEGVLQLSAPSDLGRNVLLPWLDEFQQQHPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSL+   ++  +     AAP YL+   EP  +
Sbjct: 124 RLLLGDRIADLFRQPVDVALRYGEP-EGSSLVALPVLPDNRRVLCAAPSYLQRHGEPQQV 182

Query: 184 QELDKHNLI 192
           ++L +HN +
Sbjct: 183 EQLAQHNCL 191


>gi|237807012|ref|YP_002891452.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237499273|gb|ACQ91866.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 315

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 12/248 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SF   AE+L  +Q+SIS +I+ LE E+ +KLF R ++G+ LT  G K+ 
Sbjct: 6   LETFLWVARLNSFRLTAEKLFTTQASISNRIAVLEEELDVKLFVRDSKGVRLTPDGEKVR 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  K    ++ L +++    GK+RI     +        +      YP +++++ 
Sbjct: 66  EYAEQIVGKAHALRMSLSQAN-GYEGKVRIGAIDSVVHTWFIELISWITEHYPHLEVEIS 124

Query: 128 LDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +D        +   Y D A +  + I+  S+   +L    M    A +   N R+  S+Q
Sbjct: 125 VDGARGLANQLQKGYLDIAFQADQ-IRLESIRNLELARYPMRWIVAANSPYN-RQFTSLQ 182

Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL K  LITF  +  P   +D   L  V+  I  PR+SC  VNS+ ++++    G GI +
Sbjct: 183 ELAKERLITFVANSRPH--QDILSLLHVN-GITSPRVSC--VNSFAAMIRLIEDGFGIGV 237

Query: 244 LPDYIVKD 251
           +P  +V++
Sbjct: 238 IPPALVRE 245


>gi|162148564|ref|YP_001603025.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787141|emb|CAP56731.1| putative transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 298

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 133/298 (44%), Gaps = 30/298 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +R F  VAR GS   AA  L ++ S++ R+I+ LE  +G  +F +   G  LT  
Sbjct: 2   IDWDDVRYFLAVARGGSVRAAAGHLGVNHSTVLRRIAQLEERLGTHMFEKLPTGYRLTAA 61

Query: 63  GSKLHRVTSEV---YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G ++    +++    H+LE T++  ++ SV+  G LR+     L  +LL  +L +F  ++
Sbjct: 62  GEEILEFANQMEASSHQLE-TRVFGRDQSVR--GLLRVTLPPFLATHLLMPDLADFSRMH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN--- 176
           PDI+++++      +++   AD AIR+        ++ R+ +  ++H    P        
Sbjct: 119 PDIEMEILPTGAVANLTNREADVAIRI--------VLDRETLPPNLHGLPGPELSSGIYM 170

Query: 177 CREPLSIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
            R+ L+       + + +     D +P    +   + T   P   P      V +   I 
Sbjct: 171 ARDRLTAWRAGVADPVRWIVINTDGLPGWAREGE-IHTTGAPFRTPDAETQIVATRQGI- 228

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                  G+  LP ++   +P L R+    +    T++F      + T +++ F  F+
Sbjct: 229 -------GMTKLPCFVGDADPLLARVPGTKLHGHGTLWFLTQGEARKTKRVRLFTEFV 279


>gi|241663042|ref|YP_002981402.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|309782038|ref|ZP_07676768.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|240865069|gb|ACS62730.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
 gi|308919104|gb|EFP64771.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 299

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 113/276 (40%), Gaps = 54/276 (19%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD + L+V   V   GS   A+E+ H+  S+ISR+I+ LE++ G  L YRH+RG+  T
Sbjct: 1   MRFDLESLQVLVSVIEEGSLAAASERQHIVPSAISRRIAELESDAGTALLYRHSRGVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             GS L+     +  +++    E+ E +    G +R+          L G+L  FL + P
Sbjct: 61  PAGSALYYRAKRLIDQMQEISSEMSEYAQGVRGHVRMHVNFSTMVQYLPGDLSSFLSINP 120

Query: 121 DIQIQLILDNKDI---DISMDYADCAIRLRKPIQSSSLIQRK-------LVTIHMHAYAA 170
           D++I L+  +       +    AD  I   +P  +  L  R        L+  H H   A
Sbjct: 121 DVKIDLMEKSSSQVLRSVEAGTADIGI-CSQPEAAPGLEVRPYHVDRLVLIVPHDHPIGA 179

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL------- 223
             +L+                  F D +     D+++   V  P+G   IS L       
Sbjct: 180 ARHLR------------------FADTL-----DYDY---VSMPLGA-SISTLCAQSAEQ 212

Query: 224 ---------QVNSYLSIMQYCVLGSGIALLPDYIVK 250
                    QV S+  +      G GI LLP   VK
Sbjct: 213 AGKQHKIRIQVTSFEGLRNMVAAGLGIGLLPKASVK 248


>gi|152988335|ref|YP_001345945.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963493|gb|ABR85518.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 302

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 128/305 (41%), Gaps = 39/305 (12%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AAE+L L+QS+I RQI+ LE  +G++LF R  RG+ LTE G    R  
Sbjct: 14  FESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGVKLTEAGLSYSRRV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL---- 126
           +     +E   + +     +  G + +A     G   L   LK F  L+P++ + L    
Sbjct: 74  AVRLDAVERDTLAVM--GHQGGGAIELAVVPTFGTQWLLPRLKRFQRLHPEVTVNLTNRT 131

Query: 127 ---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +  + + D ++ + D           S  +   L+  +     +P  L   R  LS 
Sbjct: 132 RPFLFADTEFDAALYFGDA--------DWSGTVSHFLMRENPVPVCSPELLGG-RRTLSA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYCV 236
           ++      I    L+ +    + W          V   +  PR     +     + Q  +
Sbjct: 183 EQ------IAGLPLMQQSTRPYGWRQWFHSQGLNVAHDMSGPRYELFSM-----LAQAAM 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+AL+P +++++   +  L+  M+         Y   PE    +  L AFR+++  +
Sbjct: 232 HGMGVALVPPFLIQEELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEE 291

Query: 294 ARDWK 298
           AR ++
Sbjct: 292 ARQYR 296


>gi|94310695|ref|YP_583905.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354547|gb|ABF08636.1| Transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
 gi|222869587|gb|EEF06718.1| predicted protein [Populus trichocarpa]
          Length = 297

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 131/308 (42%), Gaps = 30/308 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA QL +S++++S++++  E ++G +L  R  R L  TE 
Sbjct: 1   MDLNALALLVEIIDAGNLSRAANQLGMSRANVSKRLNHFERQLGAELLRRSTRQLEPTEL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + H+L   Q  +Q    + SG +R++     GQ+ +     EF+ +YP I
Sbjct: 61  GWQLYEHGRAIRHELMAAQESVQSLGKRLSGTVRLSVPSGFGQHTMSAWFIEFMTMYPAI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA---------YAAPHY 173
            + +I DN   D+     D +IR+     +++ +   L  +   A         Y  PH 
Sbjct: 121 TLNVIFDNDIEDLIKGAVDFSIRVMAETPANA-VAHSLGDVEYVACVTPALVSQYGMPHT 179

Query: 174 LKNCRE-PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           L   R+ PL   EL    L                 A   RPI  PR   L   ++  + 
Sbjct: 180 LDQFRDLPLITSELTGQKL---------HAAGRAGAAGGTRPI-RPR---LMSANFFFLR 226

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPS------FTVYFCYPEALKNTGKLKAF 286
              + G G+ L+P Y+V+ +     +++  + P        T+Y  Y  A   T      
Sbjct: 227 DAILQGLGVGLVPRYMVERDLAAGTLLQLPLPPQDLAFLRTTMYLLYMPARYQTRAFTTL 286

Query: 287 RNFIFLKA 294
             F+  KA
Sbjct: 287 VAFLRDKA 294


>gi|262191742|ref|ZP_06049916.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93]
 gi|262032381|gb|EEY50945.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93]
          Length = 314

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 11/254 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE G   H+ 
Sbjct: 9   LFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTESGVLYHQA 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP++   L L+
Sbjct: 69  CLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPEVVPYLYLN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   +++    D  IR  + +  SSLI RKL T      A+P YL     P + Q+L +H
Sbjct: 129 DNISNLAESGLDVVIRYGE-LADSSLISRKLATSRRVLCASPVYLARKGTPKTPQDLVQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGIALLP 245
           + +    ++    E   W    +    + ++  +   S+      I Q+ + G GIAL  
Sbjct: 188 DCLA---MVRSNEEMKTWHFQENE---QHKVITIVPKSFADDGEVIRQWALAGMGIALKS 241

Query: 246 DYIVKDNPNLVRIM 259
              V+D+ N  R++
Sbjct: 242 ILDVQDDLNQQRLV 255


>gi|218281608|ref|ZP_03488029.1| hypothetical protein EUBIFOR_00596 [Eubacterium biforme DSM 3989]
 gi|218217300|gb|EEC90838.1| hypothetical protein EUBIFOR_00596 [Eubacterium biforme DSM 3989]
          Length = 289

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 124/275 (45%), Gaps = 23/275 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D+   R+FY VA+  SF+ AA+ LH +Q +ISR ++ +E+E G KL  R   G+TLT
Sbjct: 1   MTLDY--YRIFYYVAKYKSFSKAAKILHNNQPNISRTMNNIESEFGCKLLVRSHSGITLT 58

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L+   +    +L   + E+  +     G + I  +       L   L++F   YP
Sbjct: 59  PEGEQLYEHVAIAIEQLYQGESEILSNKTLEHGHISIGVSETALNIFLLSKLEQFHKAYP 118

Query: 121 DIQIQL----------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
            ++I+L           L+   +DI++      I ++KP+ ++SL   + + I       
Sbjct: 119 QVKIKLSNHSSIQAVDALEKGIVDIAV--VTSPINIKKPLHTTSLYCFEEILI-----GG 171

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
             Y     E L IQ++  +  IT G    K    + + + +      P  + L+V +   
Sbjct: 172 KEYENLSNEILDIQQISNYPFITLG----KNTSTYTYYSNLFLNQKIPFHTDLEVATADQ 227

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITP 265
           I+       GI   P  ++  + ++  I  ++  P
Sbjct: 228 ILPLVKHNLGIGFYPKELISKDSDIFEIHTNIKNP 262


>gi|209546172|ref|YP_002278062.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539029|gb|ACI58962.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 301

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 112/245 (45%), Gaps = 19/245 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VAR GSF+ AA  L L+Q ++S QI  LE + G+ L  R  RG+TLT +G +L 
Sbjct: 11  MRIFVEVARLGSFSSAAALLGLTQPAVSYQIRRLEEQFGVSLLRRQHRGVTLTAEGERLL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            VT++    ++      +  + +P  +LR  T        L   +  F LL+P+  IQ++
Sbjct: 71  DVTAKAVGDIDALARSFRAEAQRPVVRLR--TDYAFSSLWLIPRMDGFRLLHPETDIQIV 128

Query: 128 LDNKDIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +      D AD A+    R       + L+Q K+V +         +L         
Sbjct: 129 ATQRFAAGFRDEADVAVVFGTRAEFGAAGTLLLQEKVVPVCTQG-----FLDRNGPFEDA 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLA-----TVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++L K  LI     +P     F+W +     +V R I   R   +  N+Y  ++Q  + G
Sbjct: 184 RQLAKAVLIHLDTPMPSPW--FDWRSYLTEFSVVRDINAGR-GDISFNTYSLVIQAALSG 240

Query: 239 SGIAL 243
            G+A+
Sbjct: 241 QGVAI 245


>gi|37675886|ref|NP_936282.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|320158034|ref|YP_004190412.1| lysR-family transcriptional regulator [Vibrio vulnificus MO6-24/O]
 gi|37200426|dbj|BAC96252.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319933346|gb|ADV88209.1| lysR-family transcriptional regulator [Vibrio vulnificus MO6-24/O]
          Length = 300

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 18/293 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  +A  GS + AA  L + ++ +SR +S LE  VG +L +R  R  +LT+ G +
Sbjct: 5   EALRAFVAIAEQGSLSGAANVLEIERTKVSRYLSELEEWVGSRLLHRTTRKQSLTDAGEQ 64

Query: 66  LHRVTSEVYHKL----ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
                +  Y  L    E + I  ++++   SGKLRIA+   L ++ L   ++ F   +P+
Sbjct: 65  ---TLALAYQMLSLSNEVSAIRDRQNNTL-SGKLRIASAYSLIEHFLLQAVEAFCAQWPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L++ +    +  +  D A+R+   + +  LI R++        A P YL+    P 
Sbjct: 121 VQIELLVADSSTHLIEEGVDLAVRITNDL-APGLIARQMGVCRSALVATPAYLEQFGHPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              +L  H  ++F            W  T D       I   +  N    ++   + GSG
Sbjct: 180 QPSDLPAHRCLSF-----SYFGKNRWYLTRDNRRESIDIQGPITANISTIVLSATLHGSG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I+  P   V  +     L+ ++ D       VY  Y    + T   + F +FI
Sbjct: 235 ISQQPYAAVAPHLAQGRLLPVLPDWQPDELGVYLVYSSRKQITPLHRQFIDFI 287


>gi|296388665|ref|ZP_06878140.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313107994|ref|ZP_07794161.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|310880663|gb|EFQ39257.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 318

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 11/248 (4%)

Query: 10  VFYV-VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           V Y+ V   GSF+ AA +  L+ S+++R++  LE  VG  L  R    +  T  G     
Sbjct: 11  VLYLDVLDGGSFSAAARKHPLTPSAVARRMDALERAVGSTLLVRTTHTVRATPAGLAFAD 70

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  +L   + E    S  P G +RI   +  G+  L   + +FL   P + +QL L
Sbjct: 71  RARRIVTELRLARAEAVSLSTAPQGLIRIDAPVPFGRRHLAPAVADFLKANPGLDVQLRL 130

Query: 129 DNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ID+  ++    D  +R   P+  S L+   L  +     A+P YL+    P S  E
Sbjct: 131 IGSFIDLQGEHLGEVDLVLRA-GPLPDSRLVATSLAPMVRVVCASPEYLREHGVPASPGE 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H  I + +L P     + W    D  +    P+ + L  N+  +++   + G GIA 
Sbjct: 190 LPEHAGIDWDNLSPP----YAWRFQHDGKLQHLRPKRARLATNNAEAMVDAALAGLGIAH 245

Query: 244 LPDYIVKD 251
           LP ++  +
Sbjct: 246 LPTWLCSE 253


>gi|239834830|ref|ZP_04683158.1| transcriptional regulator, lysR family protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239822893|gb|EEQ94462.1| transcriptional regulator, lysR family protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 298

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 2/178 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +G+F+ AA  L  S S++SR ++ LET +  +LF R  R L LT  G  L 
Sbjct: 11  LLAFVRTVEAGTFSAAARLLKTSPSAVSRSVARLETLIQTRLFLRSTRTLVLTADGHSLF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  +L     ++  S  + SG++R +   +L    L+  L +F + YP IQ+++ 
Sbjct: 71  ERLSPLLRELNMAGDDINASK-EISGRVRFSMPSELAPLFLETILSDFAVRYPAIQLEIG 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L ++ +DI  D  D A R+   + +  L+ R+LV   M   ++P + K    P + +E
Sbjct: 130 LTDQHVDIIRDDYDVAFRV-GTVANCDLMIRRLVDFKMIMVSSPPFAKKHGSPSTAEE 186


>gi|170697930|ref|ZP_02889014.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137205|gb|EDT05449.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 306

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 91/187 (48%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + V  +L++ + + Q  + +P G LR+        N L   +  F   +P +++ 
Sbjct: 65  IYERCAAVLDELDSLEAQAQSHTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPKVRLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  I +   + S + + R +  I +   A P YL+    P +   
Sbjct: 125 VTLTERPVDLVGEGYDIGIVVPYMLTSETTVVRLVERIPVVIVATPAYLRAHPRPETPAA 184

Query: 186 LDKHNLI 192
           L +H  +
Sbjct: 185 LAEHAFV 191


>gi|158425903|ref|YP_001527195.1| regulatory protein [Azorhizobium caulinodans ORS 571]
 gi|158332792|dbj|BAF90277.1| regulatory protein [Azorhizobium caulinodans ORS 571]
          Length = 294

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  + T AA +L + Q+++S QI  LET +G +LF R  RGL LT++G+ 
Sbjct: 9   NALRAFEAAARHLNITRAAMELCVGQAAVSHQIKALETRLGAQLFRRLPRGLALTDEGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  +  + + ++  T     +  ++    + +  T  +G   L   L +F   +P I ++
Sbjct: 69  LLPLVRDAFDRIGATLDRFMDGRLREVLTVGVVGTFAVGW--LLPRLPDFAAAHPGIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRL 146
           ++ +N  +D++ +  DCAIR 
Sbjct: 127 VLTNNNRVDLAGEGLDCAIRF 147


>gi|170720882|ref|YP_001748570.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758885|gb|ACA72201.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 308

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 136/308 (44%), Gaps = 26/308 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++  F      GSF+ AA    ++ S+IS+ I+ LE  + ++LF R +R LTLTE+G+
Sbjct: 4   YSQMLAFIWSTECGSFSAAARAHEMTPSAISKLIARLEDRLRVRLFQRGSRVLTLTEEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R    V   +       +    + SG LRI T     +  +   L EFL  YP + +
Sbjct: 64  AYLRSAKAVVEAMSEADSLAEGLPSRVSGTLRIHTMTSFAKQQIVPWLPEFLDTYPGLDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L  + ID      D AI     + SSS I +K+        A+P YL+    P   Q
Sbjct: 124 EIQLGAQFIDQFEQGLDIAIH-SGILPSSSRIAKKIGECEWLLCASPDYLEKYGTPQQPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCVLGS 239
           +L  H    F    P     +N  A +   +G     +PR S  Q      + +    G+
Sbjct: 183 DLMNHRCFNFSFASP-----WNKWAFIQDGLGVTTPVKPRGSFTQGELLRDMAKS---GA 234

Query: 240 GIALLPDY-IVKD--NPNLVRIME----DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  L D+ I KD  + +LV +++    +++ P   +Y  Y +    + +++ F  F   
Sbjct: 235 GIVRLADFHIGKDIQDGSLVLLLDEYKAEILEP---IYLLYSDRKHLSPRIRVFIEFFQE 291

Query: 293 K--ARDWK 298
           K  A  WK
Sbjct: 292 KWIAHPWK 299


>gi|78061769|ref|YP_371677.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969654|gb|ABB11033.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 290

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 3/136 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FD D+LR F  VA +GS T AA  LHLSQS++S Q+  LE+  G+ LF R  RG+  T 
Sbjct: 3   GFDLDQLRTFAAVADAGSLTAAAPLLHLSQSTVSEQVRKLESRAGVPLFVRSKRGVEPTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS+L +    +    E    E++  ++K  G+LR+A T     N + G L      YP 
Sbjct: 63  AGSRLLQHARRIVALNEAAFDEVRGQAIK--GELRVAITDYYRTNEVAGLLARLRECYPQ 120

Query: 122 IQIQL-ILDNKDIDIS 136
           + + +  + + DI+ +
Sbjct: 121 LSLHVSAMKSADIETA 136


>gi|53724682|ref|YP_102061.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67641468|ref|ZP_00440246.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|76809348|ref|YP_332304.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121599243|ref|YP_994015.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124386169|ref|YP_001028321.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126449423|ref|YP_001081965.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126454951|ref|YP_001065008.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134279759|ref|ZP_01766471.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167004337|ref|ZP_02270097.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167718183|ref|ZP_02401419.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167737216|ref|ZP_02409990.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167814346|ref|ZP_02446026.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167822823|ref|ZP_02454294.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167901396|ref|ZP_02488601.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167909627|ref|ZP_02496718.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|217420102|ref|ZP_03451608.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226196746|ref|ZP_03792326.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237810916|ref|YP_002895367.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242314629|ref|ZP_04813645.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254176866|ref|ZP_04883523.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254181738|ref|ZP_04888335.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254196499|ref|ZP_04902923.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254203745|ref|ZP_04910105.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254208721|ref|ZP_04915069.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254258874|ref|ZP_04949928.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254360227|ref|ZP_04976497.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52428105|gb|AAU48698.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76578801|gb|ABA48276.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|121228053|gb|ABM50571.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124294189|gb|ABN03458.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126228593|gb|ABN92133.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126242293|gb|ABO05386.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134248959|gb|EBA49041.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147745257|gb|EDK52337.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147750597|gb|EDK57666.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148029467|gb|EDK87372.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160697907|gb|EDP87877.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169653242|gb|EDS85935.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184212276|gb|EDU09319.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217397406|gb|EEC37422.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225931277|gb|EEH27284.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504727|gb|ACQ97045.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238522409|gb|EEP85853.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242137868|gb|EES24270.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243060321|gb|EES42507.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254217563|gb|EET06947.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 310

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 3/188 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     SGK+R+++T D G++ L   L EF   +P++   + 
Sbjct: 67  NCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRHQLLDWLDEFNTRHPEVTFAVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   ++  D  D AIR   P    +LI R+L        A+P ++     P    +L 
Sbjct: 127 ASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCASPAFVDRYGTPKDPLDLA 185

Query: 188 KH--NLIT 193
           +   N+IT
Sbjct: 186 RFPCNVIT 193


>gi|317401177|gb|EFV81824.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 287

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 8/177 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD   LR +  V  +G FT AAE+LHLSQS++S QI  LE + G  L  R  R L LT
Sbjct: 1   MDFDTALLRTYVAVKEAGGFTRAAERLHLSQSAVSHQIRRLEAQAGTALLVRTTRSLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    R   +V    +      Q SSV  +G +R+    +     L   L  F   +P
Sbjct: 61  EDGEDFLRYAEQVLRAQDALARRFQRSSV--AGAVRLGVPENFMGERLPLLLARFARAFP 118

Query: 121 DIQIQLILD---NKDIDISMDYADCAIRL---RKPIQSSSLIQRKLVTIHMHAYAAP 171
            +++ +++    +    +  D  D A+ +    +P + + L + + V    HA+  P
Sbjct: 119 AVRLDVVVGSYLDLRTQVEADMLDLAVVMALPSEPERGAMLRRTRFVWAAAHAFDFP 175


>gi|229134323|ref|ZP_04263137.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-ST196]
 gi|228649166|gb|EEL05187.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-ST196]
          Length = 283

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 120/252 (47%), Gaps = 15/252 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L VFY VA  G+ +HAA+ L+  QS ++ +I  LE E+G+ LFYR+ +G+TLT  
Sbjct: 1   MDIKDLTVFYEVATVGNISHAAKNLNYVQSGVTMRIKQLEIELGVPLFYRNGKGVTLTSN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++ H ++ +   +Q +  +P G L+I  T       L   L  +   YP+ 
Sbjct: 61  GEILLTYAKQIIHLIDQSIQAVQSNGTEPKGTLKIGCTESTTAVRLPPILTTYYEKYPE- 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL- 181
            ++LIL+    D  +       +L   + + ++   +L   H  ++     +   + PL 
Sbjct: 120 -VELILETNTTD-QLTQLVLERKLDGALIAGNIQHTEL---HTLSFREEELVLISKTPLS 174

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S + +++ NL+ F  G    K +E  NWL   +  I   RI  L+  +  +I+     G 
Sbjct: 175 SFKTIEELNLLAFSQGCYYRKLLE--NWLQ--EEGISPKRI--LEFGTIEAILACVKSGM 228

Query: 240 GIALLPDYIVKD 251
           G A++   I+ D
Sbjct: 229 GTAIMLKSIIPD 240


>gi|330958603|gb|EGH58863.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 310

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 135/302 (44%), Gaps = 19/302 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTEQ 62
           + LR F   AR  SF+ AA +L+++ +++ +Q+  LE+ +GI LF R + G   L LT+ 
Sbjct: 8   NALRAFEAAARHQSFSAAAAELNVTPAAVGQQVRSLESWLGIALFMRASSGTARLMLTDV 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                    E + +L      L++SSV     L +  +       L   ++ F   YP +
Sbjct: 68  ARTALPDIREGFDRLSIGLTRLKDSSVH--AGLTVTVSPAFASKWLLPRIERFQQDYPGL 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L  + + +D  ++  D  +R     +   L    L+   M    AP Y +  +  L+
Sbjct: 126 DVLLDTNARSVDFQVERVDVGVRYGAG-KWPGLTAVHLMDEVMFPVCAPDYARLKKGKLT 184

Query: 183 IQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
            + L+   LI   DL      D+  W   +D   G   ++    L++N+  S++Q  + G
Sbjct: 185 AKALEVSTLIH--DLSMANDRDYPTWRMWLDAS-GFTHVNADHGLRINNSASVLQAAIDG 241

Query: 239 SGIALLPDYIVKDN---PNLVRIMED--VITPSFTVYF-CYPEALKNTGKLKAFRNFIFL 292
            G+AL    +VKD+     LVR   D  V  P    Y+  Y        K++AFRN++  
Sbjct: 242 QGLALARSVMVKDDLAAGRLVRPFADKGVDCPLTQAYYIVYRPECNELPKVEAFRNWLLA 301

Query: 293 KA 294
           +A
Sbjct: 302 EA 303


>gi|315648496|ref|ZP_07901595.1| transcriptional regulator, LysR family protein [Paenibacillus
           vortex V453]
 gi|315276190|gb|EFU39536.1| transcriptional regulator, LysR family protein [Paenibacillus
           vortex V453]
          Length = 311

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 130/291 (44%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F  VA+    T AAE+LH++QS++SRQI  LE E+G+ LF +  R L LT  G   
Sbjct: 5   QLQYFVKVAQKEHVTQAAEELHVAQSAVSRQIHQLEEELGVNLFMQKGRNLQLTPVGQLF 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI-- 124
            +    +   L+   +E+ E      G++RI     LG +L+   + EF   YP+++   
Sbjct: 65  CKRVESIMKDLDRAVVEIHEFLDPEQGEIRIGFPHSLGIHLIPSIVAEFRKKYPNVKFRF 124

Query: 125 -QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            Q +      D+     D A     P +   +    ++T  + A   P++     + + +
Sbjct: 125 KQGMFPTLIRDVVGAEVDLAFVSPFPDRHDQVDGDIVLTEELFAILPPNHPLAGEQSIKL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +   + F       +    W A ++     P+I+  +     +I      G G++L
Sbjct: 185 EQLKEERFVLFSKGY--SLRPIVWHACLEAGF-TPKIA-FEGEETDTIRGLVAAGMGVSL 240

Query: 244 LPDY-IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+  + + N   P  VRI E  +T S  +     E L      +AFR F+
Sbjct: 241 LPEMALFQTNPLQPARVRISEPKVTRSIGLIHRADEKLPPVA--QAFRAFL 289


>gi|332295762|ref|YP_004437685.1| transcriptional regulator, LysR family [Thermodesulfobium narugense
           DSM 14796]
 gi|332178865|gb|AEE14554.1| transcriptional regulator, LysR family [Thermodesulfobium narugense
           DSM 14796]
          Length = 294

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 122/258 (47%), Gaps = 32/258 (12%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  ++R F  + + G FT AA +L+++Q  +S+QI  LE E+G++L  R A+G+ LTE 
Sbjct: 1   MDIRQIRYFLAIVQEGQFTKAASKLNIAQPPLSQQIKLLEKELGVELLIRKAKGIELTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        ++ + +++T+ EL + S    G + I T    G ++L   +KEF   YPD+
Sbjct: 61  GQVFTARGEQILNLVDSTKKELSDLSRGHHGTVTIGTVSSSGVSILPKYIKEFHERYPDV 120

Query: 123 QIQLILDN--KDID-ISMDYADCAIRLRKP---------IQSSSLIQRKLVTIHMHAYAA 170
             Q+   N  K +D +S    +  I +R P         +Q+S+     +V I+   +  
Sbjct: 121 TFQVFEGNTIKILDLVSKGVVNIGI-VRTPFNLSNYEYIVQASNKPNDPMVVIYTDNWQ- 178

Query: 171 PHYLKNCREPLSIQELDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227
               +N  E + + +L    LI    + ++I       N +         P I C +   
Sbjct: 179 ---FRN--EKVGLADLKDIPLIIHRRYEEIIMNAFSKHNII---------PNILC-KGED 223

Query: 228 YLSIMQYCVLGSGIALLP 245
             SI+ +  LG GIA++P
Sbjct: 224 VRSIIAWAELGIGIAMVP 241


>gi|269963868|ref|ZP_06178180.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831355|gb|EEZ85502.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 276

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 122/254 (48%), Gaps = 6/254 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F      GSFT AA+ L ++ S +SR ++ LE  +G +L  R    ++LT  G + +
Sbjct: 1   MRSFVYTVELGSFTSAAKVLKVTTSMVSRNVTDLENHLGNRLINRSTNSISLTHVGERYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  ++E      ++ S + SG L +     L + LL   + +F   Y +I + L+
Sbjct: 61  KEAKVIIEQIENLNESFKDDSQELSGVLNVLCPKGLTECLLMPFIIDFKRKYENISLNLL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQEL 186
           + +   D+S    D +IR          +  KL+T++ +   A+P Y+KN     +  +L
Sbjct: 121 MSDDVQDLSELGYDISIRSGSLTPKDLNLVGKLITVNENVVCASPEYIKNNGSINNPNDL 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-GIALLP 245
            +HNLI   +L  K +  F+     ++   EP    L VNS  ++ +Y +L S G+A+LP
Sbjct: 181 LRHNLIEDTNLKNKQLWSFSKDNLENKIKIEP---SLTVNSVQAV-KYALLNSYGVAMLP 236

Query: 246 DYIVKDNPNLVRIM 259
             +     N   +M
Sbjct: 237 KQLANKEINSGELM 250


>gi|153853701|ref|ZP_01995057.1| hypothetical protein DORLON_01048 [Dorea longicatena DSM 13814]
 gi|149753451|gb|EDM63382.1| hypothetical protein DORLON_01048 [Dorea longicatena DSM 13814]
          Length = 294

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 124/255 (48%), Gaps = 17/255 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D  R+FY VA+  SFT AAE LH +Q +I+R ++ LETE+G  LF R  RG++LT +G 
Sbjct: 4   YDYYRIFYHVAQQHSFTKAAEVLHNNQPNITRCMNNLETELGCHLFVRSNRGVSLTPEGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL    +  + +LE  + EL+      SG + I  + +  + +L   L+ F   YP +++
Sbjct: 64  KLFNHVAIAFEQLELGETELKRDQSLTSGLISIGVSENALRIMLLPKLEAFHNHYPHVRL 123

Query: 125 QLILDNKDIDIS------MDYA--DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           ++   +    I+      +D+A     + ++K  Q  SL   + + I     A P Y + 
Sbjct: 124 KISNHSTPQAIASLESGLVDFAVVTTPLSVQKQFQKISLGSFREILI-----AGPKYKEL 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                S++EL ++  ++  +          + ++   P   P +     +  L+++Q+ +
Sbjct: 179 ASHICSLEELAEYPFVSLENNTSTRDLHIQYFSSHGFPF-RPDLEVTSTDQCLALIQHNL 237

Query: 237 LGSGIALLPDYIVKD 251
              GI   P+ + ++
Sbjct: 238 ---GIGFYPEKLAEE 249


>gi|163942902|ref|YP_001647786.1| LysR family transcriptional regulator [Bacillus weihenstephanensis
           KBAB4]
 gi|163865099|gb|ABY46158.1| transcriptional regulator, LysR family [Bacillus weihenstephanensis
           KBAB4]
          Length = 294

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 133/305 (43%), Gaps = 45/305 (14%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F  VAR    T AAE+LH++Q S+S+ I+ LE ++G+ LF R  R +TL   G   
Sbjct: 5   QLKYFQTVARLEHMTKAAEELHIAQPSLSKTIARLEKDLGVPLFDRQGRQITLNSFGKVF 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    ++H+L   + E+++ +    G + +A +I     +L   L  FLL +P+++ Q 
Sbjct: 65  LKRVERIFHELSEGEREIKDLAELQQGSITLAVSIP---RILPELLGSFLLEHPNVRFQQ 121

Query: 127 I----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLK 175
                      LDN +ID  +           PI+   ++   L+T  +  A  + H L 
Sbjct: 122 FLASTPSMKRQLDNMEIDFCISSI--------PIEGEEMVWEPLITEEIFLAVPSGHRLS 173

Query: 176 NCREPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229
           N RE + + E+   + I+      F  L  +  +   +   +   + EP +         
Sbjct: 174 N-RESIYLHEVKDESFISMNTGYGFRHLTDQFCKKAGFTPHIAFEVDEPTV--------- 223

Query: 230 SIMQYCVLGSGIALLPDYIVKDNPNL----VRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            I      G GIA +P   +  N  L    +RI+E     +  + +     L NT   + 
Sbjct: 224 -ISDLIKQGLGIAFVPSLTLLKNSTLASNKLRIIEPNCERTIGLSWSKKRYLSNTA--QQ 280

Query: 286 FRNFI 290
           FR F+
Sbjct: 281 FREFV 285


>gi|325915261|ref|ZP_08177583.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538533|gb|EGD10207.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 306

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 127/286 (44%), Gaps = 7/286 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GS T AA  L LS +  S+++  LE ++G++L +R  R L  T +G +L   
Sbjct: 9   LFLRVLDLGSITAAAHTLDLSVAVASQRLKRLERDLGVRLLHRTTRRLHPTPEGQQLAER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   LE    +L+ES+    G LR+  +   G+  +   L  F   +  ++I   L 
Sbjct: 69  GRVLVDDLEALADDLRESAQDVGGTLRVTLSASFGRQYISPLLPAFQARHRRLRISAHLS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+     D AIR+   +  S L+ R++        A+P YL+    P + QEL +H
Sbjct: 129 DDVVDLVQQGFDLAIRI-GALDDSGLVARRIADNRRTLAASPAYLQRHGTPRTPQELMQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIALLPDYI 248
             +    +     +D   L T D      R+     +++  +++  VL G GI +   + 
Sbjct: 188 AGVLL--MGRDGRQDLWTLQTPDGGQVRVRMQSRFESNFGELVRDAVLAGQGIGMHSYWH 245

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + D      LV +M D   P+  +    P       +++AF +F+ 
Sbjct: 246 IADELRAGRLVEVMTDHPPPASNISAVMPARQLQPPRVRAFVDFLL 291


>gi|301167316|emb|CBW26898.1| putative LysR family transcriptional regulator [Bacteriovorax
           marinus SJ]
          Length = 300

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 70/122 (57%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+    VAR+ SF+ AAE L+++QS+IS+ I  LE ++ +KLF R  + + LT +G KL
Sbjct: 6   QLQTLVAVARAKSFSKAAEDLNVTQSAISQSIKNLENKIEVKLFKRSGKKVVLTPEGEKL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             + S     L  T  E+Q      SGK+RI T   +G++ L   + E+   + D+ +Q+
Sbjct: 66  FSLASSFLGNLGDTLEEIQNDKESMSGKVRIGTLTGVGKSWLAHEMLEYAKKWDDLTVQI 125

Query: 127 IL 128
            L
Sbjct: 126 TL 127


>gi|153008679|ref|YP_001369894.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560567|gb|ABS14065.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 286

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 131/289 (45%), Gaps = 27/289 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +R F  +A +G+ + AA  L++  ++I+R+++ LE+E G+KL  R  R   LTE G
Sbjct: 3   NWESVRYFVALADTGTLSGAARLLNVEHATIARRVAALESETGLKLVDRRGRRFLLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDL------GQNLLQGNLKEFLL 117
            ++  +  ++  + +      +  +V+ +G   I+ TI L          L   L     
Sbjct: 63  ERIAAIARKMQDEAQAIS---RFGAVRDTG---ISATITLTAPPSYAVARLAKPLAAVSE 116

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I ++++ + +   ++   AD AIRL +P  +  L  R+L       YA+  YL   
Sbjct: 117 QYPGIHMRVMGEARFSSLNRREADIAIRLTRPT-TGDLTIRRLGEEAFRPYASRDYL--A 173

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCV 236
           R P      ++   I + + +    +  + LA    RPI       L+ N+    +    
Sbjct: 174 RTP-----PEEWQFIAYDESLEDAPQQAHLLALAGARPI------ALRANTLEMQLALVS 222

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
             +GIA+LPD++ +    LV  + D    +  V+      +K    L+A
Sbjct: 223 ENAGIAMLPDFMAETQEQLVPALPDHAPLTREVWMVVHSDMKTVPALRA 271


>gi|300714749|ref|YP_003739552.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299060585|emb|CAX57692.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 300

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 119/284 (41%), Gaps = 7/284 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  +AR  +F  AA++ +++ S++S  ++ LE  +G++L  R  R ++LT+ G   
Sbjct: 9   ELEIFTAIARHLNFGKAAKERNVTPSTLSHTMTNLEQRIGVRLLNRTTRSVSLTDAGKAF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     L     EL    V P G LR+          LQ  L  F   YPDI +++
Sbjct: 69  LLRIEPAMLDLSLAVDELNHWRVDPRGTLRLNMPRSAEALYLQSLLLPFRQQYPDIALEV 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ++I     D  +R  + I    +       +     A+P Y+     P   QEL
Sbjct: 129 TTSDSLVNIVEGGFDAGVRFGEAIPQDMVAIPFGRKLRGAVIASPAYIALHGVPKHPQEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
              N        P  M ++ W  +   +P+    +  L +++   +      G+G+A + 
Sbjct: 189 --INFPCIQRRFPSGM-NYKWEFSDAGKPLAVAVVGSLTLDNDFVMADAASAGAGLAFVF 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +V+   DN  LV ++ D   P+ + +  YP     +  L+ F
Sbjct: 246 KELVQNRLDNGELVEVLADFAAPAESFWLYYPGRKYTSTPLRCF 289


>gi|157369582|ref|YP_001477571.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321346|gb|ABV40443.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 312

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 131/305 (42%), Gaps = 30/305 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F V AR  SFT AAE+L+++  ++SRQI  LE E+G++LF+R    + L + G +L 
Sbjct: 17  LHTFEVAARCASFTEAAEELNVTLGAVSRQIRHLENELGVELFHRKGNAVALNDTGKQL- 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGK--LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               +V   L  T ++     V+P  +  L++  T+ +  + L   L       PD+ + 
Sbjct: 76  --AIDVTRAL--TLLQKASDRVRPEQQQTLKLTCTLGIASHWLAARLPALRRADPDVSLV 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +    D++   AD AIR   P  +     R+L+       A+P +L     P  I  
Sbjct: 132 LDANESLRDLANGEADIAIRY-SPTANPPPHSRELLADTFAPLASPAFL--AAHPRRITA 188

Query: 186 LDKHNLITFGDLIPKCMEDF---------NWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            D    +    LI    +D          +W A        PR   L  NS    +Q  +
Sbjct: 189 TD----LALSQLIHSPWKDGQKMGIAGWQDWFAAFGEGTPAPR-GILTFNSVGHALQEAI 243

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G+GI L    + +D      LVR+  D   +  ++    C+ ++   +   + + N + 
Sbjct: 244 EGNGIVLGSLAVAQDALATGKLVRVFGDDRQLPAAYHYRLCWADSAFVSATTRRWVN-LL 302

Query: 292 LKARD 296
           L+A D
Sbjct: 303 LQAAD 307


>gi|71281955|ref|YP_269237.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147695|gb|AAZ28168.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 303

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 123/275 (44%), Gaps = 11/275 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F VV   GSF+ A+ +L++  S+ISRQ+S LE     +L YR  R ++LT +G +  
Sbjct: 15  MSTFIVVIDKGSFSAASRELNIVTSAISRQVSDLEDHFACQLLYRSTRAMSLTAEGKQYL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + +  + +   SG L I+            +  +F+ L+P ++I  +
Sbjct: 75  EQFRNIIGSVEQLENKSDDLNRVLSGHLTISAPSGSASLGFLKSASDFMKLHPKVKISWL 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             N+ +++  +  D +IR+ + +  S+ I R+  +  ++  A+  Y+    +P   +EL 
Sbjct: 135 FVNRFVNMVQEGIDLSIRVGE-LPDSNFIARRYGSTQINFVASEQYINQHGKPKHPKELS 193

Query: 188 KHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
           KH  L+   +  P       W    +       I S  + N    + +    G GIA LP
Sbjct: 194 KHQCLVDSSNRFP-----LRWRYQEEGKEHHAAIDSFAEANDGDIVAKLATEGLGIAYLP 248

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEAL 277
            ++ +   DN  L+ I+ +       V   YP  L
Sbjct: 249 TFLTQQYLDNGTLIPILTEFQFDRIPVSLVYPAKL 283


>gi|317050033|ref|YP_004117681.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951650|gb|ADU71125.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 293

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 130/274 (47%), Gaps = 24/274 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L++F  +A S  F   A  +H+S S++SRQI  LE +VG  LF R  R +TLTE 
Sbjct: 1   MDLRDLKLFLHLAESCHFGRTARAMHVSPSTLSRQIQRLEEDVGHALFLRDNRTVTLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +   +   + +  +  +  +    SG+LR+  ++    + L   L  F   +P +
Sbjct: 61  GERLRQFAQQTLLQYQQLRHVMDLNGPSLSGELRLFCSVTAAYSHLPPILDRFRAEHPQV 120

Query: 123 QIQLILDNKDIDISM---DYADCAIRLRKPIQSSSL--IQRKLVTIHMHAYAAPHYLKNC 177
           +I+L   +    I M     AD AI  R     +S+      L+ + + A A P  ++N 
Sbjct: 121 EIKLTTGDAADAIEMVQSGEADLAIAGRPESLPASIDFTPLGLIPLVLIAPALPCPVRN- 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-----RPIGEPRISCLQVNSYLSIM 232
               + Q+    +LI F  ++P   E       +D     R I  P I    V+ + +I+
Sbjct: 180 ---QATQDEPDWSLIPF--ILP---EQGPARRGIDLWFRRRRIPNPLIYA-TVSGHEAIV 230

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVR----IMEDV 262
               LG GIALLPD +++++P  VR    ++E+V
Sbjct: 231 SMVALGCGIALLPDVVLENSPEPVRNRVLVLENV 264


>gi|167565647|ref|ZP_02358563.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167572752|ref|ZP_02365626.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 290

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 135/297 (45%), Gaps = 31/297 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 8   NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFPLFMRHARGLTLTAEGEQ 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E    +L       +  L++ T +      +   +  F   +PD+ +Q
Sbjct: 68  LLPVVVESFARIEDISRKLTRQRTDLA--LKVPTCM---MRWVLPRIMRFQREHPDLHVQ 122

Query: 126 LILDNK-DIDISMDYADCAI----RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +    + D+D   +  D AI         +++  L   +L  +      +P  LK+  +P
Sbjct: 123 MTTTWRHDVDFQSEPFDAAIVYGTSPGADMKAVPLFDERLTPV-----CSPDLLKD--KP 175

Query: 181 LS-IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           L+ + +L  H L+  T      +   ++   A VD P   P    L + +  +       
Sbjct: 176 LARVDDLAHHTLLHPTRDHRDWRRWLEYAGAAGVD-PDRGPSFDTLDLATSAATQ----- 229

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+A L D  + D       L   ++ V+      YF YP+++    K++ F  ++
Sbjct: 230 GFGVA-LGDLTLSDEDLAARRLATPLDIVLKTGARYYFVYPDSVAQQQKIRRFSAWL 285


>gi|167034110|ref|YP_001669341.1| DNA-binding transcriptional regulator DsdC [Pseudomonas putida
           GB-1]
 gi|166860598|gb|ABY99005.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 315

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 129/292 (44%), Gaps = 43/292 (14%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L VF V AR  SF+ AA++L L+ S++S +I+ LE E+ +KLF+R  R ++L+E G +L
Sbjct: 18  SLHVFLVAARHLSFSRAADELCLTASAVSHRINRLEDELALKLFHRMPRKVSLSEDGERL 77

Query: 67  HRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             V      +L E  Q     +  + +G+L +     + Q  L   L +F   YPDIQ+ 
Sbjct: 78  FAVMQRTMDELSEAVQ---ARAHAEIAGQLTLYVRPSVAQCWLVPRLAQFTTRYPDIQLD 134

Query: 126 LILDNKDIDI---SMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + N+ ID     +D   C      P +QS  L+  ++  +    YA  H L N     
Sbjct: 135 IRVGNESIDYRTRKIDLVLCYSDGHHPGLQSIHLMNERIAPVCSPHYAQTHALAN----- 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-----WLATVDRPIGEPR----ISCLQVNSYLSIM 232
            +  LD+    T  D+       F+     W +T    I  PR      C  + +  ++ 
Sbjct: 190 DLNRLDQ--CTTLHDVAAWDNAAFDAEWQLWASTTGARISLPRRFLTFDCSDLCTLAALN 247

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMED---------VITPSFTVYFCYPE 275
                 +G+A+  + +V+      RI +          V TP++  Y  YP 
Sbjct: 248 H-----TGVAIGREQLVR-----TRIAQGELVLPFGGFVDTPNYGYYLVYPH 289


>gi|307544995|ref|YP_003897474.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307217019|emb|CBV42289.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 302

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 124/285 (43%), Gaps = 28/285 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   AR  SFT A  +L+L+QS++SRQI  LE ++G  LF R   GL  T      +
Sbjct: 13  LKAFEATARHCSFTQAGRELNLTQSAVSRQIKRLEEDLGRPLFERVPDGLRPTPAADHYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           RV   +   L      L+        +L +AT+  +    L  +L EF   +P I+I+L+
Sbjct: 73  RVVRRLLRDLADETARLRRHG--DDHQLTLATSPTIASIWLSRHLPEFQRQHPHIEIRLL 130

Query: 128 -------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
                  LD  + D+ + Y      L   +    L+   +    ++ A  +PHY ++  E
Sbjct: 131 TMEDPYRLDLTEFDLGLYY-----HLEGQVDPPGLMAETVFDEENVIAVCSPHYTRHHGE 185

Query: 180 PLSIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             + +  L +H L+   D     +   +W   ++    EP   CL+ NSY  ++   + G
Sbjct: 186 VGTPEALLRQHTLLVLEDHFNDWLTWQDWFKALELTWHEP-THCLRANSYQVLLNATLAG 244

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            GI L  + ++ D      ++              P+AL + GKL
Sbjct: 245 QGIILGWEQLLADELRQGHLLR-----------ALPQALPSLGKL 278


>gi|315499337|ref|YP_004088141.1| transcriptional regulator, lysr family [Asticcacaulis excentricus
           CB 48]
 gi|315417349|gb|ADU13990.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 320

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 132/307 (42%), Gaps = 35/307 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF   AR  SF HAAE+L ++  ++S+QI  LE  VG++LF R  R + L++ G    
Sbjct: 12  LRVFEAAARHESFKHAAEELFVTPGAVSQQIRLLEEHVGVELFVRDGRRVVLSDAGKASS 71

Query: 68  RVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  E + K+ E T+I  Q    +  G++ ++         L   L +F    PDI + +
Sbjct: 72  IILKEAFEKMFEATRIMRQ---TQQKGRVTVSVAPSFAAKWLMPRLGDFSAANPDIDVWV 128

Query: 127 ILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAY--AAPHYLKNCREP 180
             D    D ++   D AIR        +    L++  ++ +   A   AAP      R+P
Sbjct: 129 SADMAPTDFAVSDIDLAIRYGTGNYNGLNVEHLLEEAVLPVCSPALYEAAP-----IRKP 183

Query: 181 LSIQELDKHNLI--TFGDLIPKCMEDFNWLAT-----VDRPIGEPRISCLQVNSYLSIMQ 233
               +L  H L+     DL P   +   WL       +D   G PR      N    +++
Sbjct: 184 ---ADLTHHTLLHDVSSDLDPSDPDWAMWLKAHGAEEIDASRG-PRF-----NQSHMVIE 234

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             V G G+AL    I + +    R+     E     SF  +  +P+  + +     F ++
Sbjct: 235 AAVAGRGVALAKRTIAEADLRAGRLRGLFNEKDAPVSFGYHLVWPQTREPSMAQVRFMDW 294

Query: 290 IFLKARD 296
           +  +ARD
Sbjct: 295 LRAQARD 301


>gi|238762439|ref|ZP_04623410.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638]
 gi|238699424|gb|EEP92170.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638]
          Length = 307

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 10/265 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLKHARQILGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMIPGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRI-GALRDSTIHARLLGASRVRILASPDYLQLHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
            +I+EL  H+L+ F        E  N  +    P G    I  L  +S  ++    + G 
Sbjct: 180 HTIEELANHSLLGFTQ-----PEFLNQWSLPHLPGGRSSIIPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDNP---NLVRIMED 261
           GI  L D++ +++     LV +M D
Sbjct: 235 GIVELSDFMTREDQLAGRLVEVMAD 259


>gi|228927486|ref|ZP_04090541.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832205|gb|EEM77787.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 300

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 137/293 (46%), Gaps = 40/293 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  KAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQLI----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I++ ++          L   ++DI + +        K I S+ L + +L+ +       
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFLPVQ---DKEIISTPLYESELIIV----VPT 174

Query: 171 PHYLKNCREPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQ 224
            H L      +SI EL  + LI         +LI    + FN+     +PI       L+
Sbjct: 175 GHQLAEHNH-VSIAELKNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LE 223

Query: 225 VNSYLSIMQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +++  S++Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 224 ISTMESLIQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|206564003|ref|YP_002234766.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198040043|emb|CAR56024.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 296

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 14/241 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT A  +L ++Q+++S+Q+  LE  +G  LF R  RGL LT++G  
Sbjct: 11  NALRAFESSARHLNFTRAGLELSVTQAAVSQQVRSLEERLGCTLFTRLPRGLGLTDEGRA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+ + ++ET   +           L +  T  LG   L   LK+F   +P ++++
Sbjct: 71  LLPVLSDAFSRIETVLKQFDGGRFHEVLTLGVVGTFALG--WLMPRLKQFGDTHPFVELR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N  +D++ +  D AIR  +    ++  +R L+   + A   P   +    P    +
Sbjct: 129 LRTNNNVVDLAAEGLDFAIRFGEGNWPATRNER-LLDAPLTALCTPEIARRLARP---AD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L+       +      WL   D    EP  ++    +S   +++  + G+G+AL 
Sbjct: 185 LANETLL-------RSYRTDEWLGWFDAARLEPWAVNGPVFDSSRLMVEAAMQGAGVALA 237

Query: 245 P 245
           P
Sbjct: 238 P 238


>gi|157145965|ref|YP_001453284.1| hypothetical protein CKO_01718 [Citrobacter koseri ATCC BAA-895]
 gi|157083170|gb|ABV12848.1| hypothetical protein CKO_01718 [Citrobacter koseri ATCC BAA-895]
          Length = 297

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 11/293 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS-KLHR 68
           VF  +   GS + AA  L +S+  +SR +  +E   G +L +R +R LT+T  G   L +
Sbjct: 9   VFNHICDLGSLSAAARALGISRPMVSRYLDEMEKWAGARLIHRSSRRLTITPAGEDALMK 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +     L+      +E    PSG LR+A       ++L   L  FL  YP+++I++ +
Sbjct: 69  TRTLARLSLDIAGATGREV---PSGTLRVACAHFTAMHILAPMLPAFLARYPELRIEVEI 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ + +  +  D AIR+    +  + I R+L        A+P YL     P + + L +
Sbjct: 126 NNQPVSLVGERIDVAIRITDNPEPGT-IARRLGDCESVLCASPDYLHRYGTPQTPEALAQ 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN + +     K    +++L     PI       L       + +  + G GIAL+P+  
Sbjct: 185 HNCLYYSGFAGK---SWHFLDEQGEPISVAIKGNLSAGISSLLCEAALAGMGIALVPEKE 241

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            ++      LVR++  +      VY  Y         L+ F   +    RD +
Sbjct: 242 AREGLAQEKLVRLLPHLQPRQLAVYGLYLSREHQPAALRLFLEAVQGAMRDGE 294


>gi|153834509|ref|ZP_01987176.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148869095|gb|EDL68134.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 314

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 129/293 (44%), Gaps = 17/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  +FT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVIFSALIKHKNFTAAAKSLGVSVSHVSKQLSQLEASLGIKLVQRTTRSFTPTEAGQTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +V   + +  +E++    + +G +R+  +   G   +   ++E    YP +Q+++
Sbjct: 68  YHHCEQVVQAVSSATLEMESQRDEVAGLVRLGLSQSFGTLHIIPAIQELREKYPQLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +    + QR L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMLEEGLDLWITNNEHLPEGYIAQR-LADCQFVVAASPDYLLKHDTPTEPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL-----SIMQYCVLGSGI 241
            +HN + +         D+   A  +R   E  ++     +Y      ++    + G GI
Sbjct: 187 SQHNCLIYRSW----ERDYTSWAFTNR---EQELNVKVSGNYSVDLAEAVRDAAIAGWGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L  Y++ D   +  L++++ D   + S   Y  YP       K+ A   FI
Sbjct: 240 AYLATYLLGDEFRSGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVIEFI 292


>gi|21233591|ref|NP_639508.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770557|ref|YP_245319.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21115455|gb|AAM43390.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575889|gb|AAY51299.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 303

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 119/276 (43%), Gaps = 14/276 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L  F  VA   SF  AA ++ L+ SS+S  IS LE  +G++L +R  R ++LTE G+
Sbjct: 9   FNDLAAFTAVATHRSFRRAASEVGLAPSSLSHVISALERNLGVRLLHRTTRSVSLTEAGA 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L+         ++   +EL +    P+G +RI     + Q LLQ  +   L  YP + +
Sbjct: 69  RLYAKLVPALQDVDQALLELDDFRGGPTGTVRINAPEVVVQLLLQQVVPHVLARYPALSV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+ + + +DI     D  IR  + +    +           A AAP YL     P +  
Sbjct: 129 DLVSEGRLVDIVAAGFDAGIRFSESVPQDMVAVPFGGPARFVAVAAPDYLARAGTPDTPD 188

Query: 185 ELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            L +H  I      G L     E       +D P        L ++    + +    G G
Sbjct: 189 ALQRHACIRHRMPSGKLYRWEFERRGEDVVIDVP------GRLTLDQIPLMCEAAEGGLG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY 273
           IA +P+Y V+       LV+++E    P+F     Y
Sbjct: 243 IAYVPEYAVRAALQRGTLVQVLE-AWCPAFPGLVLY 277


>gi|126457230|ref|YP_001074393.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167741233|ref|ZP_02414007.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167826797|ref|ZP_02458268.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167848312|ref|ZP_02473820.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167913552|ref|ZP_02500643.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|226194759|ref|ZP_03790351.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242313165|ref|ZP_04812182.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254195495|ref|ZP_04901923.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254299515|ref|ZP_04966964.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|126230998|gb|ABN94411.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|157809562|gb|EDO86732.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|169652242|gb|EDS84935.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|225933103|gb|EEH29098.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242136404|gb|EES22807.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 298

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 127/301 (42%), Gaps = 34/301 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F   A+  +F++AA +L L+ S++SRQI+ LE  +G+KLF R  R L LT  G   
Sbjct: 10  ELHAFASSAKHLNFSYAARELGLTPSAVSRQIASLEALLGVKLFVREGRNLALTRAGQVY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++    +EL  S+ + S  L IA+        L   L  FL   PDI +  
Sbjct: 70  QARVAGPLREIGNASLELL-SAREDSNLLTIASVPTFTTKWLVPRLPRFLETAPDITLSF 128

Query: 127 ILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
                  D+     D AIR      + +Q   L  R  V +    +A  H +   REP  
Sbjct: 129 RRHLAPGDLFPLGLDAAIRYGDGRWEGVQCDYLDGRTFVPVCAPGFAERHAV---REPAD 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYC 235
           I    +        L+ +  E   WLA  DR        +  PR        Y  ++Q  
Sbjct: 186 IAAAPR--------LVHEQAE-CAWLAWADRHRATQMNALAGPRF-----EQYSVLIQAA 231

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP----SFTVYFCY-PEALKNTGKLKAFRNFI 290
             G GIAL+P ++++       +++ +  P      + Y CY PE L+ +  L+  R ++
Sbjct: 232 QAGLGIALIPAFLIRAPLAAGTLVQPLDAPVDVDEQSHYLCYAPERLQASASLRLLREWM 291

Query: 291 F 291
            
Sbjct: 292 L 292


>gi|332527833|ref|ZP_08403871.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332112228|gb|EGJ12204.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 309

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 132/303 (43%), Gaps = 33/303 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR   F  AA++LHLSQ +ISRQI  LE E+G+ L  R  R + LT  G  L 
Sbjct: 14  LRAFEAVARRLGFRAAADELHLSQPAISRQIRSLEDEIGVPLLLRGTRHVELTSAGEALL 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  + +  +L+ T  +++ +  +   ++ + T        L   L++F   +P I I++ 
Sbjct: 74  RTVAPLLDRLDATVHQIRVAQGR--RQVNLTTWPSFASMWLLPRLQQFQREHPGIDIRVS 131

Query: 128 -------LDNKDIDISMDY--ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
                  LD+ ++D+++ Y   D A     P  S+ +    L  +   A   P       
Sbjct: 132 ATDAIVELDDPELDLALRYCHPDDA-----PPGSTPMFGEVLTPVASPAL-GPLARPEDL 185

Query: 179 EPLSIQELDKHNLITFGDLIPKC--MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            P+++ E D          +P    +   +WLA    P  EPR   L +N     +Q   
Sbjct: 186 APMTLLEEDSQ--------LPSVEYLSWRHWLAAKGVPDLEPR-GWLYLNYTYQQIQAAT 236

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDV-----ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G G+AL    +V+++     ++E       +   F  +     A +   +L AF +++ 
Sbjct: 237 AGQGVALARLALVRESLERGELVEPFGPAGRLRSPFAYWLVRWPARRERPELAAFEDWVL 296

Query: 292 LKA 294
            +A
Sbjct: 297 EQA 299


>gi|262044433|ref|ZP_06017494.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038213|gb|EEW39423.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 295

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 129/287 (44%), Gaps = 37/287 (12%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +++F  +  +GSF  AAE L + + ++++ +  LE E G++L  R  R L LT +G 
Sbjct: 6   FENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLTPEGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSV--KP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           + +R +  +  + +    +L ES    +P  G+LR+   I   + L+  +L +F   +P+
Sbjct: 66  EFYRRSKPLLSQAD----DLLESFAPDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHPE 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L   +   D+  D  DC +R+   ++    + R L  + +   A+P YL     P 
Sbjct: 122 VEIVLSSSDVRRDMLRDGLDCLLRVGD-LEDGDYVARSLGEVALTTCASPGYLARYGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL---- 237
           ++++L  H  +             NW+ +  R I   R    +    ++I    VL    
Sbjct: 181 TLEDLQSHLAV-------------NWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDNSE 227

Query: 238 ---GSGIALLPD-------YIVKDNPNLVRIMEDVITPSFTVYFCYP 274
               +G+ +L         YI  D+  LV ++ D   P   +   YP
Sbjct: 228 VFTAAGLGMLQGMRFFLQPYI--DSGQLVEVLPDFPAPRRPLSLLYP 272


>gi|253574179|ref|ZP_04851521.1| LysR family transcriptional regulator [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846656|gb|EES74662.1| LysR family transcriptional regulator [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 297

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 113/262 (43%), Gaps = 28/262 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +++V   VAR  SFT AAE L+++Q +IS+ I  LE E+G+ LF R  + + LT+ 
Sbjct: 1   MDIRQMQVLIEVARLRSFTKAAEALYITQPTISKTIKALEEELGVVLFDRVGKKIELTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +     ++    +    EL +      G LRI     +G +     + EF   YPDI
Sbjct: 61  GRIIATQAQQIVTSFQNLMAELDDLRNLKKGHLRIGLPPMVGASFFPRVIGEFHQRYPDI 120

Query: 123 QIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            IQL  D     + D++    D  + +  P   + L     V   ++    P +    RE
Sbjct: 121 TIQLFEDGAKKVEQDVAKGSLDVGVAVL-PTVEAELSYFPFVEEKLNLVVHPSHRLAERE 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM------- 232
            + + EL     + F        EDF      DR IG    +C +V  +  I+       
Sbjct: 180 CVELAELAPDGFVLF-------REDFT---LHDRIIG----ACAKVGFHPHIIYESSQWD 225

Query: 233 ---QYCVLGSGIALLPDYIVKD 251
              +   +G GI LLP+ I ++
Sbjct: 226 LISEMVAVGLGITLLPETICRE 247


>gi|254422062|ref|ZP_05035780.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335]
 gi|196189551|gb|EDX84515.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335]
          Length = 312

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 18/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  +A +GS + AA  L LSQ S+SRQ++ LE+    +L  R    L+LTE G++L 
Sbjct: 11  LQTFVRIADAGSISAAARDLGLSQPSVSRQLAELESRFQTQLMRRTTHSLSLTEAGAELL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + ++ +  E  + +  E+     G L++   + LGQ  L      F   +P I +   
Sbjct: 71  ADSRQLLNDWEALEEKHIETGEMLRGGLKVVAPVALGQLHLIDIALRFQQQHPLISLSWQ 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH---YLKNCREPLSIQ 184
           L++ +I  S    DC I++  PIQ +SL    L  +      AP    +  +   P ++ 
Sbjct: 131 LEDGNIRFSEVGCDCWIKI-GPIQDNSLQVEPLGEVERLVVGAPEAITHFGSLETPRAVA 189

Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +     L  F G  IP      N L          R+S    N+  ++ +  + G G+++
Sbjct: 190 KFPFIALSPFEGGQIPLT----NLLGKTISIAPPVRMST---NNIFALRRATLAGLGLSV 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P ++++   ++  L+ ++ +   P  T++  Y   L    +L+  R FI
Sbjct: 243 MPRWLIQTELESGQLIDLLPEWRAPKLTIHLAY---LPRRHQLRRLRGFI 289


>gi|115360231|ref|YP_777369.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285519|gb|ABI91035.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 306

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 91/187 (48%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + V  +L++ + + Q  + +P G LR+        N L   +  F   +P +++ 
Sbjct: 65  IYERCAAVLDELDSLEAQAQSHTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPKVRLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  I +   + S + + R +  I +   A P YL+    P +   
Sbjct: 125 VTLTERPVDLVGEGYDIGIVVPYMLTSETTVVRLVERIPVVIVATPAYLRAHPRPETPAA 184

Query: 186 LDKHNLI 192
           L +H  +
Sbjct: 185 LAEHAFV 191


>gi|229061083|ref|ZP_04198434.1| Transcriptional regulator, LysR [Bacillus cereus AH603]
 gi|228718166|gb|EEL69804.1| Transcriptional regulator, LysR [Bacillus cereus AH603]
          Length = 283

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 123/264 (46%), Gaps = 39/264 (14%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   LRVFY VA+ G+ +HAA+ L+  QS ++ +I  LE E+G  LFYR+ +G++LT  
Sbjct: 1   MDIKDLRVFYEVAKEGNISHAAKNLNYVQSGVTMRIKQLENELGALLFYRNGKGVSLTSN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++ H ++ +   +Q +   P G L+I  T  +    L   L  +   YP++
Sbjct: 61  GEILLTYAKKIIHLMDQSVKAVQSNGTHPKGTLKIGCTESITAVRLPPILTTYYEKYPEV 120

Query: 123 QI-----------QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAA 170
           +            QL+L+ K     +D A  A  ++   + + S  + +LV I       
Sbjct: 121 EFILETHTTDQLTQLVLERK-----LDGALIAGNIQHTELHTLSFREEELVLI------- 168

Query: 171 PHYLKNCREPL-SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227
                  + PL S + +++ NL+ F  G    + +E  NWL   +  I   RI  L+  +
Sbjct: 169 ------SKTPLSSFKTIEELNLLAFSQGCYYRRLLE--NWLQ--EEGISPKRI--LEFGT 216

Query: 228 YLSIMQYCVLGSGIALLPDYIVKD 251
             +I+     G G A++   I+ D
Sbjct: 217 IETILACVKSGMGTAIMMKSIIPD 240


>gi|229097945|ref|ZP_04228895.1| Transcriptional regulator, LysR [Bacillus cereus Rock3-29]
 gi|229116964|ref|ZP_04246347.1| Transcriptional regulator, LysR [Bacillus cereus Rock1-3]
 gi|228666492|gb|EEL21951.1| Transcriptional regulator, LysR [Bacillus cereus Rock1-3]
 gi|228685382|gb|EEL39310.1| Transcriptional regulator, LysR [Bacillus cereus Rock3-29]
          Length = 283

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 33/259 (12%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L VFY VA+  + +HAA+ L+  QS ++ ++  LE E+G+ LFYR+ +G+TLT  
Sbjct: 1   MDIKDLTVFYEVAKERNISHAAKNLNYVQSGVTMRMKQLENELGVPLFYRNGKGVTLTSN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++ H +E +   +Q +  +P G L+I  T       +   L  +   YP  
Sbjct: 61  GEILLTYAKQIIHLMEQSVKAVQSNGTEPKGTLKIGCTESTTAVRIPSILANYYENYP-- 118

Query: 123 QIQLILDNKD--------IDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHY 173
           Q++L+L+           +D  +D A  A   +   ++++   + +LV I          
Sbjct: 119 QVELVLETNTTEQLTHLVLDRKLDGAFIAGTTQHAELRANVFREEELVLI---------- 168

Query: 174 LKNCREPL-SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
               + PL S Q++   NL+TF  G    + +ED  WL   +  I   R+  L+  +  +
Sbjct: 169 ---SKNPLSSFQDIGDMNLLTFSHGCYYRRLLED--WLQ--EEGISPKRV--LEFGTIEA 219

Query: 231 IMQYCVLGSGIALLPDYIV 249
           I+     G GIA++   I+
Sbjct: 220 ILACVKSGMGIAIMMKSIL 238


>gi|161870774|ref|YP_001599947.1| LysR family transcriptional regulator [Neisseria meningitidis
           053442]
 gi|161596327|gb|ABX73987.1| LysR-family transcriptional regulator [Neisseria meningitidis
           053442]
          Length = 272

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 1/152 (0%)

Query: 35  SRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGK 94
           S+ +S LE  V  KL +R++R L+LTE G + +R  S     L+    +    + KP G 
Sbjct: 3   SKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYYRQCSYALDTLDDAAQKAAGGTEKPQGL 62

Query: 95  LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSS 154
           LR+   +    + +   L E+   YP++ ++LILDN+ +D+  +  D A+R+ + + S S
Sbjct: 63  LRVTMPLWFAGSQICNWLAEYRERYPEVTLELILDNRHVDLIAEGVDLALRVSQTL-SPS 121

Query: 155 LIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           LI R L  I     A+P +L+    P + +E+
Sbjct: 122 LIARPLAEIEFALLASPDFLRRNGVPETPEEV 153


>gi|330968374|gb|EGH68634.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 274

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 132/287 (45%), Gaps = 22/287 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F   A   S + AA++  +  +++SR+I+ LE  + +KL  R  R   LT+ G KL 
Sbjct: 1   MRYFLTFATVKSLSGAAKKSGVEHATVSRRIASLEKSLNVKLVDRRKRLYELTDDGRKLA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   +  + E        +   P+ ++ I+    +    L   L  F  ++P I ++L+
Sbjct: 61  VIGRRIEEQAEAIGRLAVAAQDAPATEVTISAPSSVAIEKLVPQLGAFRAMHPGIVLRLL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D++   +S   +D  IR  +P++ + ++ R++ T     Y +  YL+        Q L 
Sbjct: 121 GDHQYSSLSSCQSDLCIRFSRPVE-NGIVARRIGTASFSFYCSSFYLE--------QRLG 171

Query: 188 KH-NLITFGDLIPKCMEDFNWLATVD-RP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H   I +   +    ++    A V  RP + E +   LQ+ +  +       G GIALL
Sbjct: 172 VHYEFIGYDSEVMTASQNAELKAIVGTRPFVLEAKTVELQIRAAEA-------GVGIALL 224

Query: 245 PDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           PD+ V+ NP L R+  ++  P    V+    E L++   ++A  N++
Sbjct: 225 PDFAVEQNPRLCRL--ELSRPLEVGVWLGVHEDLRSVASIQAAMNYV 269


>gi|186470377|ref|YP_001861695.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196686|gb|ACC74649.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 300

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 146/310 (47%), Gaps = 23/310 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AAEQL  + S  SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKVTLDELQTFATVVDTGSITAAAEQLEQTVSGASRTLARLEEKLQTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   E+   +E  + +L     +PSG+LR+        +++   +  +   YP
Sbjct: 61  EEGKAFLQNAREIIDAVENAEEQLAARRERPSGRLRVDAATPFMLHVIVPLVAGYRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R + +  +   A P YLK    P
Sbjct: 121 QVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRPVGSSRIRVLATPAYLKAHGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
             +++L++H+L+ F    P+ +  +  +   + P    RI+  +  +S  ++ Q  +  +
Sbjct: 180 KRVEDLERHSLLGFTQ--PEALNVWPLVGADNEPY---RINPSIASSSGETLRQLALESA 234

Query: 240 GIALLPDYIVKDNPN-------LVRIMEDVITPSFTVYFCYPEALKNT---GKLKAFRNF 289
           GI  L D++   +           R  +DV  P   VY+      +NT    ++ +F ++
Sbjct: 235 GIVCLSDFMTGRDRREGKLVQLFARQTQDVRQPINAVYY------RNTAISARIASFVDY 288

Query: 290 IFLKARDWKF 299
           +   A+  +F
Sbjct: 289 LAEAAKTTEF 298


>gi|150377883|ref|YP_001314478.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032430|gb|ABR64545.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 299

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 119/260 (45%), Gaps = 15/260 (5%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF      GSF  AAE L LS   + + +  LE  +G++L  R  R  +LTE G   +  
Sbjct: 9   VFVKAVDLGSFAAAAEALDLSGPMVGKHVRFLEDRLGVRLINRTTRRQSLTEFGCVYYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  + +       +   +PSGKLR+   +  G++ +   L E    Y  +++ L   
Sbjct: 69  CRVVLAEAQAADALAADQLSEPSGKLRVTMPVHFGRHCVIPVLLELARRYQALELDLSFS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ ID++ D  D +IR       + LI R++    M   A+P YL+    P ++++L +H
Sbjct: 129 DRLIDLAEDGYDLSIRTGLLEDRAGLIARRVARQPMIVCASPAYLEPHGYPETVEDLSQH 188

Query: 190 NLITF---GDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             I +   G + P       WL   +  RPI    +    ++   +I    + G G+A L
Sbjct: 189 AAIVYRRSGPVPP-------WLFPREGQRPIEVTPLHRFSLDDLDAIADAAMAGMGLAWL 241

Query: 245 PDYIVK---DNPNLVRIMED 261
           P ++V+   +   LVR++ +
Sbjct: 242 PLWLVRNRIEEGRLVRLLPE 261


>gi|107026661|ref|YP_624172.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692149|ref|YP_837682.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896035|gb|ABF79199.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650149|gb|ABK10789.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 302

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 1/184 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE    ++L  R  R  T+TE G
Sbjct: 8   DLNDLYYFVKVVEHGGFTQAGRALDVPKSTLSRRIAALEARYDVRLLQRTTRHFTVTETG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + +  +  ++    +P G +R++    L +  +   +  F+ ++P + 
Sbjct: 68  REFYERCLAVLVEADAAREVIERRHAEPRGIVRVSCPTALLEFRVSELVARFMAIHPQVH 127

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAP +L     P  
Sbjct: 128 VHLEATNRRVDLLSEGFDLALRVRFPPLEDSDLVMRVLADSPQRLVAAPQWLDGRTAPSD 187

Query: 183 IQEL 186
             EL
Sbjct: 188 PAEL 191


>gi|78061660|ref|YP_371568.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969545|gb|ABB10924.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 306

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 1/192 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +RVF  V   GSF  AA  L +  S++SR ++ LE+ +G++L  R  R L +TE 
Sbjct: 5   LDLNAVRVFVSVVDEGSFAGAARVLSIPGSNVSRHVAQLESRLGVRLLERSTRHLRMTEA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  LH     +   L   + EL     +  G L++    ++G  +L   + EF   +P +
Sbjct: 65  GRLLHERAKPMLDALTLAEFELTSQQTELRGVLKLCVPGEIGPRMLGPIIAEFASRHPRV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I        +    D  D +I + R  +  S+ + R LV++     AAP  ++    P 
Sbjct: 125 EIDCDTSLAGVSTLRDDIDLSIIVNRGKLDDSAFVVRPLVSLTSVVVAAPSLIERTGMPT 184

Query: 182 SIQELDKHNLIT 193
             ++L +   IT
Sbjct: 185 RTEQLRQLPCIT 196


>gi|308189277|ref|YP_003933407.1| transcriptional regulator, lysr family [Pantoea vagans C9-1]
 gi|308055892|gb|ADO08061.1| Transcriptional regulator, LysR family [Pantoea vagans C9-1]
          Length = 295

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 106/235 (45%), Gaps = 19/235 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  K + F  V    SFT AAE+L  SQS ISR I+ LE E  + LF R   G+ LT
Sbjct: 6   MDINIQKYKAFLKVVELESFTRAAEKLFYSQSGISRMINDLEKEWSVTLFERSRTGVRLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G KL      V  + +  Q E+   +   SG +RI T   +  + L G LK F   YP
Sbjct: 66  SDGIKLLPFAKNVCEEYQKLQAEVDALNGLQSGIIRIGTFSSVATHWLPGILKAFQEDYP 125

Query: 121 DIQIQLIL-DNKDID--ISMDYADCAI-RLRKPIQSSSLIQRK----LVTIHMHAYAAPH 172
           +I  +L+L D  +I+  I+    DC   RL       +L   K     V    HA +   
Sbjct: 126 NIDFELLLGDYTEIESWIAEGRVDCGFTRLPASFALETLFLEKDEYLAVLPEDHALSEHD 185

Query: 173 YL---KNCREPLSIQELDKHNLIT----FGDLIPKC----MEDFNWLATVDRPIG 216
            +     C+EP  + E  K+N I+       LIP+      +D+  +  V++ +G
Sbjct: 186 VIPLASLCQEPFILLEKGKNNEISEVFRVAGLIPRVKFTLWDDYAVMTMVEKNLG 240


>gi|207738839|ref|YP_002257232.1| hypothetical protein RSIPO_03530 [Ralstonia solanacearum IPO1609]
 gi|206592207|emb|CAQ59113.1| hypothetical protein RSIPO_03530 [Ralstonia solanacearum IPO1609]
          Length = 304

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 132/300 (44%), Gaps = 17/300 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTEQ 62
           + LR F    R  SF+ AA +L+++ +++ + +  LE  +G  LF+R + G   L  TE 
Sbjct: 8   NALRAFEASTRHQSFSAAAAELNVTPAAVGQLVRSLEASLGTPLFHRSSGGRARLVATEA 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             +        + +L      L+E+S   SG L +  +       L   +  F   +PD 
Sbjct: 68  AERALPDIRAGFDRLSLGLARLKEASA--SGVLTVTVSPAFAAKWLLPRIDRFQAAWPDT 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L    K +D      D  +R         L+  KL+   ++   +P  L+  R   +
Sbjct: 126 DVRLDTHLKPVDFIAQGVDIGVRYGAG-SWPGLVAEKLMGEEIYPVCSPGLLRQKRRLRN 184

Query: 183 IQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
             +L K  LI   DL     + F +W   ++R +G   ++    +++N+  +++Q  + G
Sbjct: 185 PADLAKETLIH--DLSVDGHDGFVSWDVWLER-VGVTTVATKRGMRINNSAAVLQAAIDG 241

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL    + +D+     LVR+  +V  T +   Y  Y        KL AFR+++  +A
Sbjct: 242 HGVALARSVMARDDLAAGRLVRLFPEVEFTSALAYYVVYRAECAGLPKLAAFRDWLVSEA 301


>gi|254249076|ref|ZP_04942396.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875577|gb|EAY65567.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 299

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 12/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F  AA    LS S +S  +  LE  +G++L +R  R +  T
Sbjct: 1   MQTDLGDLNAFMAVARASGFRDAARVTGLSASGLSEAVRRLEARLGVRLLHRTTRSVVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +    ++      + E   +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGERLLARLAPALTEVAAALDGIDEFRGRPAGTLKLNVPVSASRLVLPAIVPRFLEAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCRE 179
           DI++++  D   +D+     D  IR  + ++   +       I   A  AAP YL     
Sbjct: 121 DIRLEVTADENFVDVLAAGCDAGIRYDERLEQDMIAVPIGPRIQRFATAAAPGYLDRHGR 180

Query: 180 PLSIQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QY 234
           P   ++L  H  +      G + P   E    +  V+ P   P +  +Q+     +M   
Sbjct: 181 PRHPRDLLGHRCLRGRFASGAMPPWEYERDGEVVRVE-PAAGPLL--VQIGGATELMVDA 237

Query: 235 CVLGSGIA-LLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G+GI  L  D++    ++  L  ++E    P    +  YP        L+AF +F+
Sbjct: 238 AIAGTGILYLFEDWVRPHFESGALEPVLEPWWRPFSGPFLYYPGRRLVPPALRAFIDFV 296


>gi|254189454|ref|ZP_04895964.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157937132|gb|EDO92802.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 298

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 127/301 (42%), Gaps = 34/301 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F   A+  +F++AA +L L+ S++SRQI+ LE  +G+KLF R  R L LT  G   
Sbjct: 10  ELHAFASSAKHLNFSYAARELGLTPSAVSRQIASLEALLGVKLFVREGRNLALTRAGQVY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++    +EL  S+ + S  L IA+        L   L  FL   PDI +  
Sbjct: 70  QARVAGPLREIGNASLELL-SAREDSNLLTIASVPTFTTKWLVPRLPRFLETAPDITLSF 128

Query: 127 ILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
                  D+     D AIR      + +Q   L  R  V +    +A  H +   REP  
Sbjct: 129 RRHLAPGDLFPLGLDAAIRYGDGRWEGVQCDYLDGRTFVPVCAPGFAERHAV---REPAD 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYC 235
           I    +        L+ +  E   WLA  DR        +  PR        Y  ++Q  
Sbjct: 186 IAAAPR--------LVHEQAE-CAWLAWADRHRATQMNALAGPRF-----EQYSVLIQAA 231

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP----SFTVYFCY-PEALKNTGKLKAFRNFI 290
             G GIAL+P ++++       +++ +  P      + Y CY PE L+ +  L+  R ++
Sbjct: 232 QAGLGIALIPAFLIRAPLAAGTLVQPLDAPVDVDEQSHYLCYAPERLQASASLRLLREWM 291

Query: 291 F 291
            
Sbjct: 292 L 292


>gi|262173122|ref|ZP_06040799.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
 gi|261890480|gb|EEY36467.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
          Length = 314

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 1/185 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE G   H+ 
Sbjct: 9   LFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTESGVLYHQA 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F+  YP++   L L+
Sbjct: 69  CLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFIEQYPEVVPYLYLN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   +++    D  IR  + +  SSLI RKL        A+P YL     P + Q+L +H
Sbjct: 129 DNISNLAESGLDVVIRYGE-LADSSLISRKLAPSRRVLCASPAYLARKGTPKTPQDLAQH 187

Query: 190 NLITF 194
           + +  
Sbjct: 188 DCLAM 192


>gi|170735855|ref|YP_001777115.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818043|gb|ACA92625.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 297

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 1/184 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE    ++L  R  R  T+TE G
Sbjct: 3   DLNDLYYFVKVVEHGGFTQAGRALDVPKSTLSRRIAALEARYDVRLLQRTTRHFTVTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + +  +  ++    +P G +R++    L +  +   +  F+ ++P + 
Sbjct: 63  REFYERCLAVLVEADAAREVIERRHAEPRGIVRVSCPTALLEFRVSELVARFMAIHPQVH 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAP +L     P  
Sbjct: 123 VHLEATNRRVDLLSEGFDLALRVRFPPLEDSDLVMRVLADSPQRLVAAPQWLDGRTAPSD 182

Query: 183 IQEL 186
             EL
Sbjct: 183 PAEL 186


>gi|167837886|ref|ZP_02464769.1| DNA-binding transcriptional regulator CynR [Burkholderia
           thailandensis MSMB43]
          Length = 313

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 135/306 (44%), Gaps = 41/306 (13%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  G+FT AAE LH+SQ ++S+QI  LE  +G++LF R AR + LTE G+   
Sbjct: 6   IRYFLAVAEQGNFTRAAEALHVSQPTLSQQIRQLEDALGVQLFDRAARAVRLTEFGAAYA 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATT-----------IDLGQNLLQGNLKEFL 116
           R       +LE  +  + +     SG LR+A T           ID G N    NLK  +
Sbjct: 66  RHARAALQQLEAGRRAVHDVENLQSGSLRLAMTPTFSAYLIGWLID-GFNARYPNLKLMI 124

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTI----HMHAYAAP 171
              P  QI+ +L + ++D+ + +       + P I+++ L    L  +    H HA    
Sbjct: 125 RELPQEQIEPLLADDELDVGIAFDAT----QSPEIEATPLWVETLALVVGRDHRHA---- 176

Query: 172 HYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNS 227
                 R+PLS  E     LI    L+ +    F   + VD    R    PR+  ++VNS
Sbjct: 177 ----RRRKPLSPGEAADEPLI----LLSRA---FATRSKVDEYFHRNGLTPRV-AIEVNS 224

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
             ++++    G    +LP  I +   +L  I  +   P  T      +    +   +AF 
Sbjct: 225 ISAMLEMVRGGRIATVLPSAIAERRDDLCAIRLEPSLPQRTAALLMRKGGYRSAATRAFV 284

Query: 288 NFIFLK 293
           + +  +
Sbjct: 285 DHVLAR 290


>gi|170736339|ref|YP_001777599.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818527|gb|ACA93109.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 299

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 12/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F  AA    LS S +S  +  LE  +G++L +R  R +  T
Sbjct: 1   MQTDLGDLNAFMAVARASGFRDAARVTGLSASGLSEAVRRLEARLGVRLLHRTTRSVVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +    ++      + E   +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGERLLARLAPALTEVAAALDGIDEFRGRPAGTLKLNVPVSASRLVLPAIVPRFLEAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCRE 179
           DI++++  D   +D+     D  IR  + ++   +       I   A  AAP YL     
Sbjct: 121 DIRLEVTADESFVDVLAAGCDAGIRYDERLEQDMIAVPIGPRIQRFATAAAPGYLDRHGR 180

Query: 180 PLSIQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QY 234
           P   ++L  H  +      G + P   E    +  V+ P   P +  +Q+     +M   
Sbjct: 181 PRHPRDLLGHRCLRGRFASGAMPPWEYERDGEVVRVE-PAAGPLL--VQIGGATELMVDA 237

Query: 235 CVLGSGIA-LLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G+G+  L  D++    ++  L  ++E    P    +  YP        L+AF +FI
Sbjct: 238 AIAGTGVLYLFEDWVRPHFESGALEPVLEPWWRPFSGPFLYYPGRRLVPPALRAFIDFI 296


>gi|54302445|ref|YP_132438.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46915867|emb|CAG22638.1| putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 295

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 140/304 (46%), Gaps = 28/304 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V ++GSF  AA Q  +  S++SR+I  LET+ G KL  RHA+ ++LT+ G  
Sbjct: 4   DDLDLFLTVVKAGSFASAARQRAIPTSTLSRRIQQLETDTGRKLLVRHAKDMSLTKDGQL 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +  S V+  +      + +     SG + I   I   ++ +     EF  L+P +QI 
Sbjct: 64  LVQQFSTVFDDIHLRLESVDKEKEDFSGVIVINAPIIPLKHQIGPLALEFAKLHPKVQIC 123

Query: 126 LILDNK-------DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
             L N+       DIDI++ +        +P  +S  + ++L          P YL +  
Sbjct: 124 FQLGNQNNYHLRGDIDIALRFG------HQP--ASDWVAKRLSHNPSVICTTPDYLNDKP 175

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVL 237
           +     +L +++L++     P+    FN ++    + I   RI   +++   +I +  V 
Sbjct: 176 DLTHPNQLVRYDLLSPS---PQQRWVFNHISGESVKFIPNARIQSDELD---TIHRAAVA 229

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GIA LP++  K   +N  L+++  D       V   YP+    + + +A  +FIF   
Sbjct: 230 GLGIARLPEWYTKKSFENGELIQLFPDWQMEGSDVALLYPQRKLLSERTQALIDFIF--- 286

Query: 295 RDWK 298
             WK
Sbjct: 287 EHWK 290


>gi|238789174|ref|ZP_04632962.1| Transcriptional regulator [Yersinia frederiksenii ATCC 33641]
 gi|238722706|gb|EEQ14358.1| Transcriptional regulator [Yersinia frederiksenii ATCC 33641]
          Length = 303

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 130/279 (46%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLSHARQILGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMISGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRI-GALRDSTIHARLLGASRVRILASPDYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +I EL  H+L+ F        E  N  +    P G   I+  L  +S  ++    + G 
Sbjct: 180 HTIDELANHSLLGFTQ-----PEFLNQWSLPHLPGGRSSITPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVI----TPSFTVYF 271
           GI  L D++ + +     LV +M D I     P   VY+
Sbjct: 235 GIVELSDFMTQADQLAGRLVEVMADKILETWQPINAVYY 273


>gi|313884103|ref|ZP_07817869.1| LysR substrate binding domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620550|gb|EFR31973.1| LysR substrate binding domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 288

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 141/297 (47%), Gaps = 29/297 (9%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA  G+F+ AA +L +SQ ++S+ IS LE+E+   LF R  RG+ LT++G   ++
Sbjct: 7   QVFVTVAEYGNFSKAAHKLFMSQPAVSQIISQLESELDCHLFVRQNRGVELTQEGRDFYQ 66

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL-- 126
           +       L   +  ++E      G LRIA +  + + +L   LK F  +YP I++Q+  
Sbjct: 67  LVKIGLENLYQARHHMEELKDLNHGTLRIAGSDTISRYILPKRLKNFSKIYPGIRMQIKN 126

Query: 127 --------ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
                   +L    +D+ + +        +P   + +    L+T+H    AA  Y +   
Sbjct: 127 GTSGQLQDMLSWGQVDVVLGF--------EPKNQTMVDFYPLMTLHESFVAAKVYAQVLP 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCME--DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           E ++ Q + +  L+   D   +  +  D + L    R   +P I   ++ +Y  + ++  
Sbjct: 179 EKITAQNISQAKLMML-DRKSQTRQAIDAHLLKRGIRV--QPDI---ELANYELLAEFAR 232

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+A+L   +V+D   LV +  D+  P   V F   + +  +   KAF +F+ LK
Sbjct: 233 QGLGMAILARELVED---LVILETDIKLPQRQVGFYITKNMPLSHAAKAFMDFVSLK 286


>gi|171321362|ref|ZP_02910318.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171093360|gb|EDT38552.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 306

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 91/187 (48%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++   + V  +L++ + + Q  + +P G LR+        N L   +  F   +P +++ 
Sbjct: 65  IYERCAAVLDELDSLEAQAQSHTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPKVRLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D  I +   + S + + R +  I +   A P YL+    P +   
Sbjct: 125 VTLTERPVDLVGEGYDIGIVVPYMLTSETTVVRLVERIPVVIVATPAYLRAHPRPETPAA 184

Query: 186 LDKHNLI 192
           L +H  +
Sbjct: 185 LAEHAFV 191


>gi|167578080|ref|ZP_02370954.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167616210|ref|ZP_02384845.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142783|ref|ZP_05591045.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 290

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 6/140 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VAR  SFT AA+ L ++Q +ISRQI  LE   G  LF RHARGLTLT +G +
Sbjct: 8   NALQIFATVARHRSFTRAADALCVTQGAISRQIQSLEAHYGFPLFMRHARGLTLTAEGEQ 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V  E + ++E   I L+ +  +    L++ T +      +   +  F   +PD+ +Q
Sbjct: 68  LLPVVVESFARIE--DISLKLTRQRTDLALKVPTCV---MRWVLPRIMRFQREHPDLHVQ 122

Query: 126 LILDNK-DIDISMDYADCAI 144
           +    + D+D   +  D AI
Sbjct: 123 MTTTWRHDVDFQSEPFDAAI 142


>gi|153215018|ref|ZP_01949777.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124114992|gb|EAY33812.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
          Length = 296

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 137/306 (44%), Gaps = 37/306 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT  G +  
Sbjct: 7   MRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTAAGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P +   ++
Sbjct: 67  QRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQVHFDVL 126

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185
             ++   +  +  D A+R  ++P    +LI R+L+ + M   A   YL     P+ + Q+
Sbjct: 127 ASDRFSQLVDERVDIALRFTQQP--DENLIARRLLEVGMVVCATEEYLAQ-HAPIGLPQD 183

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY-CVLGS 239
           L  HN +        D + K  E F+ L   +    +    C    ++  I++  C L +
Sbjct: 184 LAHHNCLVHISGNKWDFV-KNNEQFSVLVNGNIRANDMGTLCRAALNHKGIIRLPCDLAN 242

Query: 240 GI-------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +       ALLPDY +               PS +++  Y   L  + +    R FI  
Sbjct: 243 PLLRAGQLQALLPDYYL---------------PSSSIWAVY---LSRSYQTPLVRQFIDF 284

Query: 293 KARDWK 298
            A  W+
Sbjct: 285 LAERWQ 290


>gi|292488949|ref|YP_003531836.1| HTH-type transcriptional regulator YfeR [Erwinia amylovora
           CFBP1430]
 gi|292900086|ref|YP_003539455.1| LysR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291199934|emb|CBJ47058.1| LysR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291554383|emb|CBA21810.1| Uncharacterized HTH-type transcriptional regulator yfeR [Erwinia
           amylovora CFBP1430]
 gi|312173110|emb|CBX81365.1| Uncharacterized HTH-type transcriptional regulator yfeR [Erwinia
           amylovora ATCC BAA-2158]
          Length = 306

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 72/126 (57%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+    +LRVF  VAR GSF+ A + + LSQS++S  I  LE+E+ I+L  R  R + LT
Sbjct: 1   MNCTLRQLRVFVAVARQGSFSQAGQLIGLSQSAVSHSIKELESEMAIRLLDRTTREVLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L      +  +L TT ++++    + SG +R+A +  +  +L+   L    L YP
Sbjct: 61  EAGEQLASRLERILEELNTTLLDVRSYGQQRSGTVRVAASQTISAHLMPQCLASGQLRYP 120

Query: 121 DIQIQL 126
           +I+I L
Sbjct: 121 EIKIML 126


>gi|170724877|ref|YP_001758903.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810224|gb|ACA84808.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 301

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  VA  GS T AA +L +S +S S  +  LE ++   LF R  R L LT+ G +
Sbjct: 4   NDLKLFVRVADCGSITAAATELDISPASASAALKRLEKQLETSLFIRSTRSLRLTDTGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    L   Q  + +   K SG +++A   D+G+N+L   L  F+  YP+++++
Sbjct: 64  YLIHCRKALADLTLGQQAIDDVKEKISGVVKLALPSDVGRNVLLPWLDSFMDEYPELKLK 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + +   D   D  D A+R   P + SSL+  K+ +      A+P Y+    +  SI +
Sbjct: 124 VHIGDTLSDFYHDKIDMALRSGTP-RDSSLVAFKICSASRVLCASPDYIAKWGKVESIDQ 182

Query: 186 LDKHNLITF 194
           L  HN + F
Sbjct: 183 LADHNCLFF 191


>gi|73538817|ref|YP_299184.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72122154|gb|AAZ64340.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 304

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 132/288 (45%), Gaps = 13/288 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GS + AA  + LS +  S+++  LE ++G++L +R  R L  T +G+ L   
Sbjct: 9   LFLRVLDLGSISAAARSMDLSVAVASQRLQRLERDLGVRLLHRTTRRLHATPEGAILAEQ 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L+     L+++    SG LR+ T+   G+  +   L EF+ ++P +++   + 
Sbjct: 69  GRALVEDLDALGSSLRQAGSSISGTLRLTTSSSFGRLYISPLLPEFMAIHPGLKLSFTMT 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+     D AIR+   +  S+L+ RKL +      A+P YL     P + Q+L  H
Sbjct: 129 DNVLDLVSAGFDLAIRI-GTLDDSTLVARKLASNRRLLCASPEYLSRRGTPRTPQDLASH 187

Query: 190 N-LITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLP 245
           + L+  G    +  +D   +   D   GE  +     ++ NS   +    + G GIAL  
Sbjct: 188 DCLVLVGS---QGRQDVWHIG--DGAGGEIAVRVRGPIEANSGELLSDAALAGLGIALHS 242

Query: 246 DYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V        LV ++ D       +Y   P+      +++AF +F+
Sbjct: 243 TWHVCAALRKGQLVPVLADYPLAESGIYAVMPQRRLVPPRVRAFVDFL 290


>gi|301049426|ref|ZP_07196388.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300298803|gb|EFJ55188.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
          Length = 286

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 125/290 (43%), Gaps = 23/290 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E++ +L     +LQ  S K  G L ++       + L   L  F   YP I ++
Sbjct: 69  YFLDIKEIFSQLTEATRKLQARSAK--GALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   ++  D   D  D AI   R   P     L   KL   ++    +P  L   +   +
Sbjct: 127 IQAVDRQEDKLADDVDVAIFYGRGNWP----GLRVEKLYAEYLLPVCSPLLLTGEKPLKT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGS 239
            ++L KH L+             +W  T  R +G   I+  Q    +    ++Q  + G 
Sbjct: 183 PEDLAKHTLL-------HDASRRDW-QTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQ 234

Query: 240 GIALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAF 286
           G+AL  + + +      R++    DV+      Y    ++    GK+ A 
Sbjct: 235 GVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAL 284


>gi|260550393|ref|ZP_05824604.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406499|gb|EEW99980.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 299

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 5/247 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F VVA+  SFT AA +L  SQS+IS+ +  LE  +GIKL  R  R +  T
Sbjct: 1   MKENLNDLHTFIVVAQERSFTRAAAKLRTSQSAISQTLRNLEDRIGIKLLSRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L  +      ++E    +L      P+G LRI+      Q +L   +++ +  + 
Sbjct: 61  EAGEYLLSLIQPAIEEIEHGMNQLSALKNDPAGTLRISADEYGIQTVLWPAVEKVIQQFR 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCRE 179
            I +++  D   +DI     D  +R R  + S  +I  ++   I M   A   YL+    
Sbjct: 121 KISVEITSDYGLVDIVDGRFDAGLR-RGGLVSKDMIALQISEPIQMLTVATKEYLERYGH 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLG 238
           P   ++L +H  I     +P   E + W  T         ++   V + LS ++Q    G
Sbjct: 180 PKQPKDLVEHQCINL--RLPTHGELYRWQFTKGNKTQSVNVNAKIVFTTLSPVLQAVRSG 237

Query: 239 SGIALLP 245
            GIA LP
Sbjct: 238 VGIAYLP 244


>gi|145300088|ref|YP_001142929.1| DNA-binding transcriptional activator GcvA [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142852860|gb|ABO91181.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 306

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 15/291 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F   AR  SFT AAE+L ++Q++IS QI  LE  +GIKLF R  R L LTE+G  
Sbjct: 9   NALKAFEAAARHLSFTRAAEELFVTQAAISHQIKALEEYLGIKLFRRKNRSLLLTEEGQG 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  +     +L   S K  G L ++         L   L +F   +PDI ++
Sbjct: 69  YFLDIKDIFTSISEATDKLLARSAK--GALTVSLQPSFAIQWLVPRLVKFSERHPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   + D     D  D AI   +      L   KL T ++    +P  L   +   +  +
Sbjct: 127 IKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLHTEYLIPVCSPLLLTGPKPLRTPDD 185

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLS-IMQYCVLGSGIAL 243
           L +H L     L      D+  W   +D  I  P ++   + S+ + ++Q  + G G+AL
Sbjct: 186 LIRHTL-----LHDTSRRDWKAWFRQLD--IDAPNVNQGPIFSHSTMVIQAAIHGQGVAL 238

Query: 244 LPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
               + +      R++   E V+      Y    E   + GK+ AFR+++ 
Sbjct: 239 GHSVLAQPEIEAGRLICPFEQVLVSKNAFYLVCQEQQSDQGKIVAFRDWML 289


>gi|254227028|ref|ZP_04920587.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125620432|gb|EAZ48807.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 301

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 134/300 (44%), Gaps = 25/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 4   NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQS 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  L     +L E S K  G L I+         L   L +F    PDI ++
Sbjct: 64  YFLDIKDIFSSLAEATDKLLERSEK--GALTISLPPSFAIQWLVPRLADFNQQEPDIDVR 121

Query: 126 LILDNKDIDISMDYADCAI---RLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + D     D  D AI   R   P +++  L Q  L+ +      +P  L   +   
Sbjct: 122 IKAVDMDEGSLTDDVDVAIYYGRGSWPGLRADKLYQEFLIPL-----CSPALLLGNKPME 176

Query: 182 SIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            + +L  H L+   D   K  + F   N L  V+   G P  S   +     ++Q    G
Sbjct: 177 KLSDLAYHTLLH--DTSRKDWKQFAKENGLDNVNVNHG-PIFSHSTM-----VLQAAAHG 228

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+AL  + + +   D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 229 QGVALGNNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 288


>gi|194366335|ref|YP_002028945.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349139|gb|ACF52262.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 294

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 2/140 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR GSF  AAE+LHL+QS+IS+QI GLE  +   LF+R  R +TLT+ G  
Sbjct: 9   NALRGFEAAARLGSFHRAAEELHLTQSAISQQIRGLEASLQQPLFFRQGRSVTLTDAGID 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   T  +  +L  + I   +   KP+ +L + T+    ++ L   L  F  L+PD  + 
Sbjct: 69  LLETTQALLRQL-ASGIRRLDQYRKPN-QLIVNTSPAFARHWLVPRLAGFHRLHPDADLW 126

Query: 126 LILDNKDIDISMDYADCAIR 145
           L+   +  D++    D A+R
Sbjct: 127 LLTSEEAPDMTTQTLDVAVR 146


>gi|15889817|ref|NP_355498.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157749|gb|AAK88283.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 308

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 22/295 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   +R+GS T AA +L L+Q ++SRQI  LE ++G+ LF R  + + LT  G    
Sbjct: 15  LAAFEAASRTGSVTAAARELGLTQGAVSRQILALEEQLGVALFLRERQTIRLTRAGEGYA 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E   ++ T  + L+ +     G L +      G   L   L +F+  +P I + L+
Sbjct: 75  REIREALRRISTASLNLRAN--PDGGTLNLGVLPSFGTRWLVPRLPDFIARHPGISVNLL 132

Query: 128 LDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             +   D   D  D AI    P     + + L+  K++ +   A+   + L    + L +
Sbjct: 133 TRSSLFDFRTDTVDAAIHFGLPHWPGTELAFLMHEKVIPVCSPAFKELYGLSRPDDLLHV 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L            P   E   W  + D  +    +  +  + + +I +    G G +L
Sbjct: 193 PLLHMTTR-------PDAWE--QWFRSHD--VRFDNVHGMLFDQFTTIAEASSAGVGASL 241

Query: 244 LPDYIVKDNPNLVRIMEDVI--TPSFTVYF--CYPEALKNTGKLKAFRNFIFLKA 294
           +P +++++     R++  V     S   Y+  C P+       L++FR +I  +A
Sbjct: 242 VPSFMIEEELRSGRLVSAVAGEVESEEAYYLACMPDR-ATYPPLESFRRWIVYQA 295


>gi|330939599|gb|EGH42910.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 230

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 98/191 (51%), Gaps = 1/191 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGS T A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEQRLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  +  +   + +P G LR++  +      L   L  FL  Y ++ +
Sbjct: 64  SYYESALRLLAELEQVEQGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYREVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL         +
Sbjct: 124 EVDLSDRPVDVISEGYDVVLRI-GVLEDSSLIARRIASIDRVYCASPAYLAERGIQQKPE 182

Query: 185 ELDKHNLITFG 195
           +L  H+ + +G
Sbjct: 183 DLHTHDCLPYG 193


>gi|262278850|ref|ZP_06056635.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259201|gb|EEY77934.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 288

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 135/295 (45%), Gaps = 29/295 (9%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ L  F V     S + AA +L +  +++SR+I+ LE  + +KL  R  R   LT  
Sbjct: 7   IDWENLHYFSVFTEEKSLSAAARKLGVDHATVSRRIAQLEQNLKLKLVDRRPRTYILTPD 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +V + +  +  + +   Q    +  G + I+       +L+  +L  F   YP +
Sbjct: 67  GERLAQVVARMMEETFSIERLTQAGQQEVMGSVSISMPPLTAAHLIMPHLGRFYRHYPQL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR---- 178
           +++++ D   + +    AD A+R  +P +  +L+ RK+  I    YAAP+YL +      
Sbjct: 127 KLRVLGDVHYVSLQHSEADIAVRFGRP-KDENLVARKVGEIPFGIYAAPNYLASTDSESY 185

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           E +S++    H     G    K  E       +   + P  + R +C +           
Sbjct: 186 EWISVEVGGVH-----GQKQQKLKERLGNKEPVMVTNHPELQWRAACGE----------- 229

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +G+A+LPD++   + NLVR+ +D    S  ++    E L+++  ++   +F+
Sbjct: 230 ---AGLAVLPDFLGTLS-NLVRLQDDHPM-SAEIWLVTHEDLRHSPAIRVVMDFL 279


>gi|238027298|ref|YP_002911529.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237876492|gb|ACR28825.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 307

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 25/280 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R +  V R  S T AA+ L L+QS++SRQ++ LE  +G++LF+R  R ++ T +G +
Sbjct: 12  DLMRGYVAVGRRMSITLAAQDLCLTQSAVSRQVNALEEALGVRLFHRGYRSISFTPEGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R       +L+ T   L    V+    + I  +I +    L   L E   ++P + ++
Sbjct: 72  LFRAADGAVRQLQDTIEALTHPKVRQ--PVTITASIGVASLWLLPRLGELQRIHPGVDLR 129

Query: 126 LILDNKDIDISMDYADCAIRL----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   +K +D+  +  D AIR       P  S  L    +V +     A+P         L
Sbjct: 130 VAATDKLLDLRAEGIDLAIRYAPADHAPATSLRLFDETIVPV-----ASPSLGVAT---L 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L +H L+ F       ++  + L  +     + R   L+ N Y  ++Q  + G GI
Sbjct: 182 DAGTLARHVLLEFDGARRPLLQWADHLGALGLDAAQAR-GMLRFNQYDQVIQAALAGRGI 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG 281
           AL            + ++E ++     V    P A + +G
Sbjct: 241 AL----------GRIALVEPLLADGRLVAIGAPGAPRASG 270


>gi|187926712|ref|YP_001893057.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241665044|ref|YP_002983403.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728466|gb|ACD29630.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240867071|gb|ACS64731.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 306

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 116/256 (45%), Gaps = 16/256 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L++F  +  +G+ + AA +L  ++S++S ++   E  +G++L  R  R +  TE 
Sbjct: 1   MDLNALKLFVEIVDAGNLSAAARRLQTTRSNVSHRLKAFERALGVQLLRRTTRRVEPTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ ++     +  ++      +        G +R++    LG  L+   L  F   YPDI
Sbjct: 61  GAGIYEHGRSILREMAAADALVSSLGKSLQGSVRLSVPTGLGHLLVSPLLVAFKRAYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +  DN+  D+  +  D A+R+   P +  SL+   L  +     AAP YL     P 
Sbjct: 121 RLDVRFDNRVSDLIGEDVDVALRIVSNPPE--SLVATLLDEVDWVLCAAPDYLAARGVPS 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCV 236
           S++ L  H +++     P   +     A     +G+ R +      +  ++YL +     
Sbjct: 179 SVEALRDHTIVS----APAVGQPLRLAAQ----LGDERTAVTLDPGVSSDNYLFLQAAVR 230

Query: 237 LGSGIALLPDYIVKDN 252
            G+G+ +LP Y   D+
Sbjct: 231 AGNGLGILPYYAAADD 246


>gi|86357342|ref|YP_469234.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86281444|gb|ABC90507.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 295

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 125/283 (44%), Gaps = 7/283 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VAR  SF  A E+  ++ S++S  +  LE  +GI+L  R  R ++LTE G  L
Sbjct: 8   ELAAFAAVARHKSFRKAGEERGVTASAVSHAVLNLEDRIGIRLLNRTTRSVSLTEAGELL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +  + ++      L      P G++RI     +G  ++   +   L   P++Q+++
Sbjct: 68  ISHLAPAFGEMAAALDALNRYRSTPFGRVRINVPNSIGPFVIGRVIAPLLQRNPNLQLEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +DI  +  D  IR  + +    +  R    I +    +P Y +   +P +  EL
Sbjct: 128 NATDRLVDIVEEGFDAGIRFGERVTEGMIALRIKPRIRLVVVGSPAYFEGRPKPQTPYEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  I   ++ P     + W     D+ +       L ++ +  ++Q  + G G+A + 
Sbjct: 188 KRHLCIQ--NMFPSGAR-YAWEFEKDDQMVSFQPTGPLSLDDHELMLQAALGGVGLAYIW 244

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +  V+    +  L+++++D   P   +Y  YP     +   +A
Sbjct: 245 EPRVEKAIADGELIQVLDDWCQPEEPLYLYYPSRRHMSAGFRA 287


>gi|78059645|ref|YP_366220.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964195|gb|ABB05576.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 301

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 123/290 (42%), Gaps = 15/290 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF RH R + LT+ G  
Sbjct: 9   NSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGRPLFERHNRRVELTDSGRA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + ++       Q         LR++         L   L  F + +P I+++
Sbjct: 69  YLAEVGASFDRIALATA--QHFGHAQQRVLRVSAPATFSLRWLVPKLSSFQVAHPAIEVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN--CREPLSI 183
           L   N+ ID   D  D  +R   P      +  + ++       AP  L+      P  +
Sbjct: 127 LSTSNEPIDKLRDKVDLIVR-GGPQAIDGYVAEEFLSEVRLPVCAPKLLEGRPLHTPADL 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
                 +  T+  + P+      WLA   +P   PR S    + YL+ +Q  + G G+A+
Sbjct: 186 AGFTLLHAATYPGMWPE------WLAAAGQPNLVPRHSLTLEHFYLT-LQGALDGLGVAM 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTV--YFCY-PEALKNTGKLKAFRNFI 290
            P  +V D+    R+++    P+     YF Y   A  N   ++AF+ ++
Sbjct: 239 GPIALVADDIAEGRLVQPFSEPALPPWRYFTYVASARANDEAVRAFKEWL 288


>gi|53717747|ref|YP_106733.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|134284068|ref|ZP_01770762.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167717493|ref|ZP_02400729.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei DM98]
 gi|167813614|ref|ZP_02445294.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei 91]
 gi|167892239|ref|ZP_02479641.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei 7894]
 gi|167916996|ref|ZP_02504087.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei BCC215]
 gi|237810320|ref|YP_002894771.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei MSHR346]
 gi|52208161|emb|CAH34091.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|134244520|gb|EBA44624.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|237504010|gb|ACQ96328.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei MSHR346]
          Length = 322

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 19/196 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G    
Sbjct: 10  LETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGRLYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I+L 
Sbjct: 70  ATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRIELS 129

Query: 128 LDNKDIDISMDYADCAIRLR---------KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L +  +DI  +  D A+R+          KPI S+    R L+       A+P YL    
Sbjct: 130 LSDHYVDIVGEGFDLALRMGNYDLPSQIVKPIGSN----RGLLC------ASPGYLARRG 179

Query: 179 EPLSIQELDKHNLITF 194
            P +  +L +H+ + +
Sbjct: 180 RPTAPADLAQHDCVIY 195


>gi|332141351|ref|YP_004427089.1| transcriptional regulator, LysR family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551373|gb|AEA98091.1| transcriptional regulator, LysR family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 254

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 8/234 (3%)

Query: 46  GIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLG 104
           G  LF+R+ R + +T  G K   +  E    + E  Q     S  +  G++RIA  +  G
Sbjct: 3   GELLFHRNTRHIQVTLVGEKFALIAKERLRAVDELFQTSAPNSGNELQGRVRIAAPVGFG 62

Query: 105 QNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH 164
              L   L E   ++P + I L L ++ +D+  +  D  IR+   ++ S  I R+L  I+
Sbjct: 63  HKCLMPVLLELSTIHPQLDIDLTLSDERVDVVDEKIDIGIRI-GFMRDSRFIARQLTKIN 121

Query: 165 MHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ 224
           M+  A+P  +     P SI+EL+  +L   G +     + + W+ ++DR    P I+  +
Sbjct: 122 MYVVASPDLINRVGRPASIEELN--HLPVTGLVDRNTGKLWPWVFSMDRQ-WTPSITRFR 178

Query: 225 VNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
                + +     G G A +PD++V+D      LVR++E+V    + +Y   P+
Sbjct: 179 SADTEAELMAIQNGLGFAQIPDFLVQDLLRQEKLVRVLEEVEPVPWDLYIYRPQ 232


>gi|73539326|ref|YP_299693.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122663|gb|AAZ64849.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 300

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 71/126 (56%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+    +LR F  VARSG FT AA +LHL+QS+ S QI  LE+++G++L  R  R   LT
Sbjct: 1   MNVTLRQLRAFVEVARSGGFTAAAPKLHLTQSATSLQIRELESQLGLQLIDRSTRRFALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + GS+       +   +E +  + +E   K  G++ +ATT  L   LL  ++  FL  YP
Sbjct: 61  DAGSEFLISAMRIVGDVEQSVADTRELVHKRRGRITVATTPLLASTLLPESIAHFLDAYP 120

Query: 121 DIQIQL 126
            I +++
Sbjct: 121 AITVRI 126


>gi|126454337|ref|YP_001064424.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167822157|ref|ZP_02453628.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|226194614|ref|ZP_03790209.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242317742|ref|ZP_04816758.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|126227979|gb|ABN91519.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|225933315|gb|EEH29307.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242140981|gb|EES27383.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 322

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G    
Sbjct: 10  LETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGRLYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I+L 
Sbjct: 70  ATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRIELS 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI  +  D A+R+       S I + + +      A+P YL     P +  +L 
Sbjct: 130 LSDHYVDIVGEGFDLALRMGN-YDLPSQIVKPIGSNRGLPCASPGYLARRGRPTAPADLA 188

Query: 188 KHNLITF 194
           +H+ + +
Sbjct: 189 QHDCVIY 195


>gi|238797038|ref|ZP_04640541.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC
           43969]
 gi|238719083|gb|EEQ10896.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC
           43969]
          Length = 301

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 136/303 (44%), Gaps = 40/303 (13%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  +  +GS + AA +L +SQ +ISR++  LE  +G+KL  R    + LT+ G + +
Sbjct: 1   MQTFIRIVEAGSLSGAAVRLGISQPTISRRLQTLERLLGLKLLQRTTHTMKLTDDGERCY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + +     + +L+ ++ +P G LR+      GQ+ L   LKE+L  YP + ++ I
Sbjct: 61  THAKALINSWNIMEDDLRSATDEPRGLLRVLVPHAFGQDQLIKPLKEYLHRYPKMSVEWI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++  D   +  DCAI++   +   S++   L  +     AAP  L +  +P+      
Sbjct: 121 LNDRRPDFIAEGIDCAIQVGA-VTDPSVVAILLAEVPRIVVAAPELLAD--KPIPTH--- 174

Query: 188 KHNLITFGDLIPKCMEDFNWLA-----------------TVDRPIGEPRISCLQVNSYLS 230
                      P+ ++DF WLA                  + R   +P++S    +S  +
Sbjct: 175 -----------PEQLQDFQWLALNTFYCNEVVLSHKTDGEISRLAIQPQLS---TDSLYA 220

Query: 231 IMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +    + G G  +   +++ D+     LV +  D       VY  YP A     +L+AF 
Sbjct: 221 LRNAALAGLGAGIASTWVISDDLAQGRLVHLTPDWHGLPLPVYLVYPYASFYPARLRAFL 280

Query: 288 NFI 290
           + +
Sbjct: 281 DIM 283


>gi|238024657|ref|YP_002908889.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879322|gb|ACR31654.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 341

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 127/297 (42%), Gaps = 21/297 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  V  +GSFT AA  L+ +  + SR ++ LE  +  +L  R  R L+LT  G + 
Sbjct: 6   NMRVFARVVEAGSFTAAALSLNSTTGATSRAVTELEARLRTRLLNRSTRRLSLTPAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +   + E   +  +PSG LR+ +   +GQ+ +   L  +   +  + ++L
Sbjct: 66  LLRCRQILADVGAAEEEASRAHERPSGVLRLHSFASIGQHYVMPALTRYRERHHGVSVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +  D+    +D A+     +  S L+   L        A+P YL+    P S  EL
Sbjct: 126 TLSQRMPDLFDGSSDMAVVTASSLPDSELVSHCLGETFSILCASPSYLRERGAPSSPSEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
             H+ +    L        +W L +    + + R+   +Q N+  S+      G GI +L
Sbjct: 186 VDHDCLM---LQTPAFATHDWLLESRTGQVEQIRVRGPVQTNTAESLAIAIRDGIGIGML 242

Query: 245 PDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y    +++D  +L+R++         +Y  YP            R F+  K R W
Sbjct: 243 PLYAAIGLLRDG-SLMRVLPAHTLQRMRIYALYPS-----------RRFVDAKVRTW 287


>gi|149189014|ref|ZP_01867303.1| transcriptional regulator [Vibrio shilonii AK1]
 gi|148837200|gb|EDL54148.1| transcriptional regulator [Vibrio shilonii AK1]
          Length = 292

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 79/142 (55%), Gaps = 9/142 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F+V A+  SFT AA++LHL+Q ++S +I  LE  +G  LF R  R L LTE+G + 
Sbjct: 10  NLHTFHVAAKVLSFTLAAKELHLTQGAVSHRIKVLEKSLGFNLFTRGTRKLGLTEEGERF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H+  S+  + +     E++ + +  SG++ IA++ +   + L   LK+F   YP+  + +
Sbjct: 70  HQTLSKSLYSIFGEIEEIKSTDM--SGEITIASSPNFASSWLVPRLKDFNQRYPNFNVNI 127

Query: 127 IL-------DNKDIDISMDYAD 141
           ++       +N  +DI+  Y D
Sbjct: 128 LVHEEQQNFENDQVDIAFYYGD 149


>gi|84385751|ref|ZP_00988781.1| putative transcriptional regulator, LysR family [Vibrio splendidus
           12B01]
 gi|84379067|gb|EAP95920.1| putative transcriptional regulator, LysR family [Vibrio splendidus
           12B01]
          Length = 299

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 130/297 (43%), Gaps = 12/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  VAR  SF+ AA  LH++QS++S Q+  LE  +G  LF R  R L+LT  G + +
Sbjct: 9   IQCFESVARFNSFSQAAIALHVTQSAVSHQVRLLEEYLGETLFVRQGRRLSLTPIGERYY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S     +     +++E     SGK+RIA    L    L   L+     +P+I + L 
Sbjct: 69  EDVSHSLQNIAQASYQIREGD---SGKIRIAMYSSLAVKWLVPRLENLRQQHPEIDLTLS 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +   + + S   ADC I    P    + +   L    ++ + +    +   +    + L 
Sbjct: 126 MVADEPEFSDQVADCFITAYPP--KKNYVSDFLYKEQLYPFCSQKVWQRIEDKPLPEALW 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCV-LGSGIALLP 245
              L++   +     E  +W+   +R     P+   +   S++ +    V    GIA L 
Sbjct: 184 DQQLLSVSSIFKDGGEAKDWIQWCERGGFSLPKDVKISQFSHMVLAAEAVKYHQGIAFLN 243

Query: 246 DYIVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           DY + D     NLVRI M D+ T    +YF Y  +     +++   +++  +  D++
Sbjct: 244 DYFLNDQDLQQNLVRIPMHDLPTGD-NMYFVYKNSRAKQFEIRTLGHWLKQQCFDYE 299


>gi|53724656|ref|YP_101964.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67642437|ref|ZP_00441193.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121599891|ref|YP_994123.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124386133|ref|YP_001028220.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126450237|ref|YP_001081835.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126450868|ref|YP_001081858.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|167001156|ref|ZP_02266955.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254176878|ref|ZP_04883535.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254197175|ref|ZP_04903598.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254203644|ref|ZP_04910004.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254208619|ref|ZP_04914967.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254360325|ref|ZP_04976595.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52428079|gb|AAU48672.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|121228701|gb|ABM51219.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124294153|gb|ABN03422.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126243107|gb|ABO06200.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|126243738|gb|ABO06831.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|147745156|gb|EDK52236.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147750495|gb|EDK57564.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148029565|gb|EDK87470.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160697919|gb|EDP87889.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169653917|gb|EDS86610.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|238523587|gb|EEP87024.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243062988|gb|EES45174.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 322

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 19/196 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G    
Sbjct: 10  LETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGRLYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I+L 
Sbjct: 70  ATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRIELS 129

Query: 128 LDNKDIDISMDYADCAIRLR---------KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L +  +DI  +  D A+R+          KPI S+    R L+       A+P YL    
Sbjct: 130 LSDHYVDIVGEGFDLALRMGNYDLPSQIVKPIGSN----RGLLC------ASPGYLARRG 179

Query: 179 EPLSIQELDKHNLITF 194
            P +  +L +H+ + +
Sbjct: 180 RPTAPADLAQHDCVIY 195


>gi|296102271|ref|YP_003612417.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056730|gb|ADF61468.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 297

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 23/292 (7%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL-- 66
           +V+  +   GS + AA  L +S+  +SR +  +E   G +L  R  R LTLT  G K+  
Sbjct: 8   QVYNRICELGSLSAAARALGISRPMVSRYLEQMEKWAGTRLVNRSTRKLTLTAAGEKVLL 67

Query: 67  -HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R  S++     + +IE Q     PSG LR+A       +L+   L   L  YP ++I+
Sbjct: 68  KTRTLSQL-----SQEIEGQSEKDLPSGTLRVACAHFTAMHLIAPVLPGLLSRYPQLRIE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L ++N  + +  +  D AIR+    +   +I R+L        A+P YL     P  ++E
Sbjct: 123 LDVNNHPVSLVGERIDVAIRITDNPE-PGMIARRLGECRSVLCASPQYLATHGTPEQVEE 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI----MQYCVLGSGI 241
           L +HN + +        + +++L     P GE     +  N   SI    M+  V   GI
Sbjct: 182 LAQHNCLHYSFF---AGQAWHFLT----PEGENVSVAVSGNLSASISSLLMEAAVKHCGI 234

Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP+   +   +   LV ++  +   +  ++  Y         L+ F + I
Sbjct: 235 AMLPEQEAHAAIEQGTLVPVLSSLTPKALAIHGIYQSREYQPAALRVFLDEI 286


>gi|229525511|ref|ZP_04414916.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae bv. albensis VL426]
 gi|229339092|gb|EEO04109.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae bv. albensis VL426]
          Length = 306

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 134/300 (44%), Gaps = 25/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  L     +L E S K  G L I+         L   L +F    PDI ++
Sbjct: 69  YFLDIKDIFSSLAEATDKLLERSEK--GALTISLPPSFAIQWLVPRLADFNQQEPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + D     D  D AI   R   P +++  L Q  L+ +      +P  L   +   
Sbjct: 127 IKAVDMDEGSLTDDVDVAIYYGRGSWPGLRADKLYQEFLIPL-----CSPALLLGNKPME 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            + +L  H L+   D   K  + F   N L  V+   G P  S   +     ++Q    G
Sbjct: 182 KLSDLAYHTLLH--DTSRKDWKQFAKENGLDNVNVNHG-PIFSHSTM-----VLQAAAHG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+AL  + + +   D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 234 QGVALGNNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 293


>gi|148655926|ref|YP_001276131.1| LysR family transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148568036|gb|ABQ90181.1| transcriptional regulator, LysR family [Roseiflexus sp. RS-1]
          Length = 290

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 2/151 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AAE LH+SQS++SR +  LE +VG+ L  RH+RG+ LTE G +L 
Sbjct: 7   VRIFTAVATQGSFTGAAEALHISQSAVSRAVRELERQVGMALVERHSRGVILTEAGKRLV 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                ++      ++ L+E     +G L I  +  +G  +L   L  +   YP I++ L 
Sbjct: 67  LHARRIFALERLAELSLEELQTLQTGHLAIGASTTIGIYMLPVLLGIYHRRYPGIELFLD 126

Query: 128 LDNKD--IDISMDYADCAIRLRKPIQSSSLI 156
           + N    +   +D+      +  P++ S L+
Sbjct: 127 IGNTQQIVRHVLDHRLDVAYVEGPVEQSDLV 157


>gi|91225702|ref|ZP_01260731.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91189591|gb|EAS75866.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 280

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 134/274 (48%), Gaps = 9/274 (3%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           + ++++++S+ +  LE ++ ++L  R  R ++LTE+G +L  +       +E    EL +
Sbjct: 1   MGVTRAALSQHLKALEQQLQVRLINRTTRSMSLTEEGQRLLDILQPSLVNIEQVVNELND 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
           S ++PSG +RI+ +    + L++  L EFL  YP I+++LI+D+   +I  +  D  IRL
Sbjct: 61  SHLEPSGLIRISVSRTAARLLIEPYLGEFLSRYPKIRLELIMDDGFSNIVAEGVDAGIRL 120

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
              +    +       +     ++P Y +    P + ++L+ HN + +       ++ ++
Sbjct: 121 GLSLDEHMVAIPITPPLTTAIVSSPEYFRQNGLPQTPEDLEGHNCLAYRFTSSGTIDHWS 180

Query: 207 WLA--TVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVI 263
             +     RP + EP+ + +  N   S++Q  + G G+    D  V+ + +  R+   V+
Sbjct: 181 LTSPDVAKRPLVFEPKGNAI-FNDDCSMLQAAIQGVGLVKHIDLWVEKHIDEGRLTR-VL 238

Query: 264 TP---SFTVYFCY-PEALKNTGKLKAFRNFIFLK 293
           TP    F  ++ Y P       K++   +F+  K
Sbjct: 239 TPWCKEFPGFYLYIPSREHMPKKIRVLMDFLIEK 272


>gi|167736539|ref|ZP_02409313.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei 14]
 gi|254182270|ref|ZP_04888867.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184212808|gb|EDU09851.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 322

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 19/196 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G    
Sbjct: 10  LETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGRLYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I+L 
Sbjct: 70  ATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRIELS 129

Query: 128 LDNKDIDISMDYADCAIRLR---------KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L +  +DI  +  D A+R+          KPI S+    R L+       A+P YL    
Sbjct: 130 LSDHYVDIVGEGFDLALRMGNYDLPSQIVKPIGSN----RGLLC------ASPGYLARRG 179

Query: 179 EPLSIQELDKHNLITF 194
            P +  +L +H+ + +
Sbjct: 180 RPTAPADLAQHDCVIY 195


>gi|134291451|ref|YP_001115220.1| DNA-binding transcriptional regulator CynR [Burkholderia
           vietnamiensis G4]
 gi|134134640|gb|ABO58965.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 297

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 17/287 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA   +FT AAE LH+SQ ++S+QI  LE  +G  LF R  R + LT+ G    
Sbjct: 8   IRYFLAVAEQQNFTRAAEALHVSQPTLSQQIRQLEDTLGTPLFDRSGRTVHLTDAGEAWM 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI--- 124
           R        L+     + + +    G LR A T     +L+   + EF  L+P I+I   
Sbjct: 68  RYAKLALQDLDAGVRAIHDVAELSRGSLRFAVTPTYTASLVGPLVDEFHQLHPGIRIDIR 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +L  D  +  ++ D  D  +         I+S SL +  L  +  H+    H   + R+ 
Sbjct: 128 ELTQDQMEAQLADDKLDIGVAFHPAFSADIESQSLFEETLSLVVGHS----HPRASRRKA 183

Query: 181 LSIQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L+ ++  K  L+   D    +   D ++     RP     +  ++V++  +I++    G 
Sbjct: 184 LAGRDFGKEPLVLLNDTFATRRFIDEHFARHAIRP-----LVAIEVDTIGAIVEIVRRGQ 238

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              +LPD+I +    L  +  D   P+ T      +    T   +AF
Sbjct: 239 LATVLPDHIARVQEGLHPVPLDPPLPTRTAAVLERKGGYRTAASRAF 285


>gi|330817492|ref|YP_004361197.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327369885|gb|AEA61241.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 313

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 15/242 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR +  V R  S T AA+ L L+QS++SRQ++ LE  +G +LF+R  R ++ T +G +
Sbjct: 12  DLLRGYVAVGRRMSITLAAQDLCLTQSAVSRQVNALEEALGTRLFHRGYRSISFTPEGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L RV  E   +L+ +   L     K    + I  +I +    L   L E    +P + ++
Sbjct: 72  LFRVADEAVRQLQDSVEALTHP--KAPQPVTITASIGVAGLWLLPRLGELQQAHPGVDLR 129

Query: 126 LILDNKDIDISMDYADCAIRL----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   +K +D+  +  D AIR       P  S  L    +V +     A P    +    L
Sbjct: 130 VAATDKLLDLRAEGIDLAIRYAAADHAPASSVRLFDETIVPV-----AHPSLGVSA---L 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L +H L+ F       ++  + L  +     + R   L+ N Y  ++Q  + G GI
Sbjct: 182 DADTLARHALLEFDGPRRPLLQWADHLGALGLEAAQ-RRGVLRFNQYDQVIQAALAGRGI 240

Query: 242 AL 243
           AL
Sbjct: 241 AL 242


>gi|325277656|ref|ZP_08143231.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097212|gb|EGB95483.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 279

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 124/276 (44%), Gaps = 16/276 (5%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
           +VAR  +F  AAE+L ++Q+++++Q+ GLE  +G++LF R  RGL LT+ G      ++ 
Sbjct: 1   MVARHLNFRLAAEELGVTQAAVAQQVRGLEASLGLRLFERLPRGLALTDAGLG---YSAS 57

Query: 73  VYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK 131
           + + L    I+     ++P +  L ++ T       L   L  F   +PDI ++++  ++
Sbjct: 58  IRNAL--AMIDEATRLLRPQAAHLTVSVTPTFASKWLIPRLGAFAERHPDIDLRVLATDR 115

Query: 132 DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL 191
                 D  D A+R   P   + L   +L+   + A A+P   K    P S  +L    +
Sbjct: 116 LSHFGTDSVDVAVRYGNPDVGAGLNSERLMEQRIVAVASPALFKGAHAPTSFAQLQAFVM 175

Query: 192 ITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           +    D  P+      +LA +    G+P    L+ N     +   + G GIAL     V 
Sbjct: 176 LHDAHDFWPR------FLAELFPQHGQPSARNLRFNQTSLAIDAALSGQGIALASLAFVN 229

Query: 251 DN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           ++     L ++ +  +    + Y  +P  L+    L
Sbjct: 230 EDIAAGRLSQVFDHELRLDKSFYLVWPRKLQQPKAL 265


>gi|317404227|gb|EFV84665.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 326

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 124/278 (44%), Gaps = 49/278 (17%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A +GS + A  +L LS ++ S ++  LE+ +  +LF+R  R L LTE+G +++
Sbjct: 9   MRLFVETAAAGSLSAAGRKLGLSAAAASARLIKLESALRARLFHRSTRQLRLTEEG-RVY 67

Query: 68  RVTSEV-YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               E+    ++  +  LQ       GKLRI+ + D G+NLL+  L+EF   +PD++I L
Sbjct: 68  LAHCEIALRAIDDAEAALQAGQQAVRGKLRISASADFGRNLLKDWLEEFSAAHPDLKIAL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   ++  D  D AIR  +P Q  +L+ R L        A+P Y+     P + ++L
Sbjct: 128 TLSDSLSNLLHDDIDLAIRFGRP-QDGALVARHLAPNWRVLCASPDYIARRGAPRTPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE--------------PRISCLQVNSYLSIM 232
            +H+ I               L T   P+ +              P     + N      
Sbjct: 187 ARHDFIV--------------LVTAAGPLNQFHFIKNETAVSFTVPLERAWETNDGALAR 232

Query: 233 QYCVLGSGIA------------------LLPDYIVKDN 252
           Q+ + G GIA                  LLPDY V ++
Sbjct: 233 QWAIAGHGIARKTIWDAADDLRAGRLKVLLPDYRVSED 270


>gi|289625720|ref|ZP_06458674.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330869658|gb|EGH04367.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 271

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 15/226 (6%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
           +ISR+++ LE ++G++LF+R  R ++LT +G         + H  ET +  L+  +   S
Sbjct: 2   AISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFLPHAKTMLHASETARATLKGDTGTAS 61

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G LR+      GQ ++   L   +   P + I L L +  +DI     D AIR+   I+ 
Sbjct: 62  GVLRVTAPSVFGQTVIMPLLPVLMQENPALSIDLTLSDSIVDIVGMGIDVAIRIAT-IRD 120

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
           S+L+ R L        A+P YL    +P  ++EL  H  I         +    W +   
Sbjct: 121 SALVARSLAPNARVVCASPDYLARHGKPALLEELRHHPCI--------ALHAMPWWSFTK 172

Query: 213 RPIGEPRISCLQ----VNSYLSIMQYCVLGSGIALLPDYIVKDNPN 254
              GEP     Q     NS  ++   C  G G+A+L  + V+   N
Sbjct: 173 N--GEPITIRAQGPFSANSVEAVRTACKQGMGLAMLTYWDVRQEIN 216


>gi|260596458|ref|YP_003209029.1| putative HTH-type transcriptional regulator ltrA [Cronobacter
           turicensis z3032]
 gi|260215635|emb|CBA27915.1| Probable HTH-type transcriptional regulator ltrA [Cronobacter
           turicensis z3032]
          Length = 298

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 1/187 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  SGSF+ AA +L  + SS+SR +S LE E+G KL  R  R L L+E GS + + 
Sbjct: 11  VFVQVVESGSFSAAARKLGSTPSSVSRSVSRLERELGCKLLVRTTRKLRLSEAGSGVFQR 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            + +         +   +S  P G++ +     +G+ ++   ++ FL  YP++ I L L+
Sbjct: 71  AASMMDAARDVMAQGGTASQAPQGRVTLGVPKAVGRFVIHPLMEAFLARYPEVDICLRLE 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  D  D A+R+     S  L  + L+ I     A P YL     P + Q L +H
Sbjct: 131 DRYMDLIDDEVDLALRITDS-PSPGLYGKPLMQIDHLLCATPDYLARHGTPETPQALRQH 189

Query: 190 NLITFGD 196
           + I+ G+
Sbjct: 190 SCISLGE 196


>gi|197295530|ref|YP_002154071.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195945009|emb|CAR57632.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 310

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 2/190 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F   A  GSF+ AA +  L    +S  I  LE E+  +LF R  R L LT +G +
Sbjct: 5   EDLQLFVRTAALGSFSSAAREADLLPGQVSAAIQRLERELDTRLFARSTRSLKLTAEGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   +   +  L        G LRIA   D+G+N L   L  F   +P + ++
Sbjct: 65  YLPYAEEVLSTIHEGRERLHGDKQALQGTLRIAAPSDIGRNALLSWLGVFRDAHPKLVLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSIQ 184
           L L +   D+  D  D AIR   P +++S +   L   +     A+P Y+K    P S+ 
Sbjct: 125 LSLSDHVTDVFRDPVDVAIRYGAP-EAASYVALPLAEDNRRVLVASPGYVKRYGAPASLD 183

Query: 185 ELDKHNLITF 194
           EL  H+ + F
Sbjct: 184 ELVLHDCLPF 193


>gi|167578925|ref|ZP_02371799.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 293

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 126/300 (42%), Gaps = 28/300 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSF  AAE   +S + ++++I  +E  +G +L +R  R   L++ G   +
Sbjct: 1   MEMFVRVVECGSFAAAAEASQVSATMVAKRIQAIEARLGARLLHRTTRRQQLSDVGQLYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++E  +    E    PSG LRI   +  G   L   L E++ L+P +++ L 
Sbjct: 61  ERCRRALAEVELAESSAAELHATPSGVLRIVAPVGFGSYSLVPALAEYMALHPQVRVDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN          +  + + + I +  L+ R L        AAP YL     P   ++L 
Sbjct: 121 LDNDPPRFWQGDFELGVHIGE-IDAPGLVARPLKPYRRQLAAAPAYLARHGTPKRPEQLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPRISCLQ----VNSYLSIMQYCVLG 238
           +H           C+    W    DR     P GE R   ++     N   ++    + G
Sbjct: 180 EH----------VCLGLSYWRRR-DRWRLVGPRGEVRDVAVRGGFTANHGDALRVAALQG 228

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLK 293
            GI L P  ++  +    R++   + P+++     +Y  Y +  + T KL++  +F+  +
Sbjct: 229 LGIVLQPQAVLTGDLAAGRLVP--VLPAWSLAPSPMYLVYAQDRRPTAKLRSAIDFLLAQ 286


>gi|238791896|ref|ZP_04635533.1| Transcriptional regulator [Yersinia intermedia ATCC 29909]
 gi|238729000|gb|EEQ20517.1| Transcriptional regulator [Yersinia intermedia ATCC 29909]
          Length = 296

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 126/298 (42%), Gaps = 15/298 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD  R F  V R GS + AA  L++SQ +  R I  LE  +G KLF R   GL  TE  
Sbjct: 7   DWDNQRTFLAVMREGSLSAAARSLNVSQPTTRRHIESLEQSLGQKLFIRTPSGLIPTETA 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L     E+    E        +     G +RIAT+  LG  +L   L+   L YPD+ 
Sbjct: 67  QVLLPHVVEMAAAAEALVRAASANIGSAKGTVRIATSELLGVEILPQRLEPLRLHYPDLL 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L +K   +    AD AIR  +P ++  +  ++     +  YA   YL     P SI
Sbjct: 127 LELSLSSKIEGLPGLEADIAIRTLRP-KALPVSAQRAGYCEVGLYATEDYLTRYGIPHSI 185

Query: 184 QELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             L  H LI       D+   C +  ++          P    L+ +S+L+ +     G 
Sbjct: 186 GALALHALIGPDRNLHDIEVFCKQGMDF---------APHQYRLRTDSHLAQLAAIRSGL 236

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           GI    + I + +  LVR++    +     +    E L+N  +++   + +    R +
Sbjct: 237 GIGACHEPIARQS-GLVRVLAQEFSYPLEFWVVMHEDLRNIPEVRVVFDHLLNTLRQY 293


>gi|326388107|ref|ZP_08209710.1| LysR-family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207273|gb|EGD58087.1| LysR-family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 293

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 125/287 (43%), Gaps = 14/287 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  VA   SF  AA    +S ++ SR IS +ET +G+ L  R  R + LT +G+ 
Sbjct: 5   DAIRTFIAVAEHKSFAEAARTRRISPTAASRAISDMETRLGVLLLRRTTRSVQLTPEGAT 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +L++    L   + +P G L +   +  G+  +     + +  +P + ++
Sbjct: 65  YLEHCRLALAELDSAASSLSGENTQPRGVLIVTAPVVFGRMKVLPVTLDLMRRHPGLSVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ + +  +  D A+R+   +  S+L   ++        A+P YL+    P S+  
Sbjct: 125 LTLTDRVVRLVDEGIDVAVRIAH-LADSALRAVRVGETRRVLVASPAYLEERGYPTSVAA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H+LI F +      ++  W  + D  +    EPR   L  NS  + +   + G GI 
Sbjct: 184 LHDHDLIAFDNF----AQNGEWRFSTDGRMAIRFEPR---LLTNSVDAAIDAALAGGGIT 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
               Y V+   ++  LV ++ +   P   V   +      +  ++AF
Sbjct: 237 RALSYQVERHVESGRLVPLLPEHDPPQVPVSLVFQANRARSANVRAF 283


>gi|294651812|ref|ZP_06729107.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822299|gb|EFF81207.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 294

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 21/266 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L++F +VA   SF  AA QL L +S+++  I  LE E  + LFYR  R + LT +GS 
Sbjct: 5   ERLKIFCLVAEKQSFAQAALQLGLPRSNVTYAIQALEKEYEVLLFYRTTRKVALTHEGSL 64

Query: 66  LHRVTSEVYHKLE-----TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +     +  +L+      TQ+  QE      GK+ I     L   +L  +L  F   YP
Sbjct: 65  FYEEAIRLVAQLKELNRFKTQVRSQE------GKISIGMPKRLATQVLIPHLSAFYQRYP 118

Query: 121 DIQIQLILDNKDI-DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +++ LI  + D  ++     DC +R+ + +Q   L+ R +    +   A+P YL    E
Sbjct: 119 KVKV-LINGSDDFSNLIEQQLDCVVRVGQ-VQDEYLLIRPIKQTQIWTLASPKYLAEYGE 176

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P     L++H  + +   + K   + + LA  +  I  P    L V +  + +Q  + G 
Sbjct: 177 PKHFDALERHFAVDYH--VAKHYRERSELAFQNHRINMP--YRLLVENTEAYIQAGLAGI 232

Query: 240 GIALLPDYIVK---DNPNLVRIMEDV 262
           G+  +P++  K   +   L R+  D+
Sbjct: 233 GLIQIPEFDAKTYVEQGQLQRLFSDI 258


>gi|268611076|ref|ZP_06144803.1| transcriptional regulator, LysR family protein [Ruminococcus
           flavefaciens FD-1]
          Length = 293

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 67/116 (57%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VAR  SF+ AAE+L LSQ ++SRQI  LE E+G +L  R ++G+TLTE+G  L 
Sbjct: 6   LKYFLAVAREQSFSVAAERLFLSQPTLSRQIKELEDELGTQLLIRSSKGVTLTEEGMILR 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               E+   L+ T+ E+++S  + SG + I         L+    K+    YPDIQ
Sbjct: 66  ARAEEITELLDKTEQEVRKSGEQVSGMVYIGAGETYAIKLIADIAKKLNADYPDIQ 121


>gi|229176285|ref|ZP_04303760.1| Transcriptional regulator, LysR [Bacillus cereus MM3]
 gi|228607192|gb|EEK64539.1| Transcriptional regulator, LysR [Bacillus cereus MM3]
          Length = 300

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 133/286 (46%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F   YP
Sbjct: 62  DAGRILLLHSKTIFHEVEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNHSYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISIPLYKSELTLVVPTDHQLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
           R  +SI EL  + LI         +LI    + FN+     +PI       L++++  S+
Sbjct: 181 RNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q    G GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 231 IQMVSKGMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|299769041|ref|YP_003731067.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298699129|gb|ADI89694.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 300

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 2/190 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+    +A+ G+F  AA +L +S +++S  IS LE  +G++LF R  R ++LTE G
Sbjct: 5   NLNDLKAVMAIAKRGTFRGAAIELGMSTTALSHAISKLEENLGVRLFNRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        + +    ++     PSG LRI       + ++   + EFL  YP++ 
Sbjct: 65  RLFVEQVGPALQDIHSALDIVRSQRETPSGTLRINAAAFAAREIISPVIIEFLRRYPEMN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLS 182
           I L+ + K +DI  D  D  IR+   +  S +I   L  +  +    +P YL+   +P  
Sbjct: 125 IDLVTEGKLVDIIADGFDLGIRVAHLV-PSDMIAVSLGKLQRYVVVGSPEYLERYGKPKI 183

Query: 183 IQELDKHNLI 192
             +L +H  I
Sbjct: 184 PTDLFRHKCI 193


>gi|290476737|ref|YP_003469648.1| putative transcriptional regulator [Xenorhabdus bovienii SS-2004]
 gi|289176081|emb|CBJ82884.1| putative transcriptional regulator with periplasmic binding protein
           domain (LysR family) [Xenorhabdus bovienii SS-2004]
          Length = 296

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 19/296 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L VF  V+   SFT A  QL +S S+IS+ IS LE ++ ++LF+R  R +TLT +G
Sbjct: 3   NFSVLEVFVRVSEVRSFTAAGNQLGVSSSAISKAISRLEEKLRVRLFHRSTRTVTLTPEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +    + +++E  + EL +S   PSGKL+++    +G  L      EF   YP+I+
Sbjct: 63  TLFLKRCRRILNEIEAAENELSQSQSVPSGKLKVSMP-SIGV-LFMPKFAEFSQQYPEIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   +  +D+  +  D  IR  +P   S L+ R L +       +P Y +    P   
Sbjct: 121 LEIDSTDGLVDLIEEGFDAVIRTGEP-ADSRLMARVLGSYKRVIVGSPTYFQKFEIPKKP 179

Query: 184 QELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVL 237
           +EL  H  + +     G L      D  W    D P  +       V + L  ++ +   
Sbjct: 180 EELINHFCMMYRYKSTGKL------DI-WPINQDNPTLQLEWPTRMVTNTLDPLVSFAEN 232

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GI  +PD  +++      L+ I+ D      T    +P +   + KL+ F NF+
Sbjct: 233 SLGITCIPDLAIREQLKTGKLITILNDFNNDITTCRILWPSSKYLSPKLRVFINFM 288


>gi|134294127|ref|YP_001117863.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137284|gb|ABO58398.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 296

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 130/294 (44%), Gaps = 16/294 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT A  +L ++Q+++S+Q+  LE  +G  LF R  RGL LT++G  
Sbjct: 11  NALRAFESSARHLNFTRAGLELSVTQAAVSQQVRSLEERLGCALFTRLPRGLGLTDEGRA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+ + ++ET   +           L    T  +G   L   LK F   +P ++++
Sbjct: 71  LLPVLSDAFSRIETVLNQFDGGRFHEVLTLGAVGTFAIG--WLMPRLKRFGETHPFVELR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N  +D++ +  D AIR  +    ++  +R L+   + A  AP   +    P    +
Sbjct: 129 LRTNNNVVDLAGEGLDFAIRFGEGNWPATRNER-LLDAPLSALCAPDIARRLSRP---AD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L+       +      WL   D    EP  ++    +S   +++  + G+GIAL 
Sbjct: 185 LTNETLL-------RSYRTDEWLGWFDAAQVEPWTVNGPVFDSSRLMVEAAMQGAGIALA 237

Query: 245 PDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P  +      L  +    D+       +    ++   T  ++ FR++I  +A D
Sbjct: 238 PACMFARELQLGMLARPLDIDVRGGAYWLTSLKSKPLTPAMQLFRDWIVAEAAD 291


>gi|86139508|ref|ZP_01058076.1| transcriptional regulator CatR [Roseobacter sp. MED193]
 gi|85823691|gb|EAQ43898.1| transcriptional regulator CatR [Roseobacter sp. MED193]
          Length = 299

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 32/262 (12%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            ++ +L  F  VA    F  AAE+L ++Q  +SRQI  LE E+   LF R    +TLT+ 
Sbjct: 1   MNFKQLTYFIAVAEELHFGRAAERLDMAQPPLSRQIKQLEDELEAILFNRGRSAITLTQA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +    +  +LE T++E++       G+LRI         +L   ++ +   YP++
Sbjct: 61  GERLLKRGKAIVAQLEDTRLEVRRLGQGAEGRLRIGFVGSATFGILPNIIRSYRANYPEM 120

Query: 123 QIQLILDNKD------IDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLK 175
            + L   N        +   +D A     L+ P   S  L++ KL+       A P  + 
Sbjct: 121 NLSLTPMNNAQLYRALVSREIDVAFARPTLKDPEFLSKHLVEEKLI------LALPDIVD 174

Query: 176 NC-REPLSIQELDKHNLI--------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN 226
              R    ++ L  HNLI        ++ D++ K +ED  + A +       R+ C+ + 
Sbjct: 175 TGNRTVAKLERLMTHNLILYPERPRPSYADMVIKAVEDAGFKAPM-------RLWCMDLQ 227

Query: 227 SYLSIMQYCVLGSGIALLPDYI 248
           + LS++    +G G+ ++P+ +
Sbjct: 228 TALSLV---AVGEGVCIVPESV 246


>gi|332162977|ref|YP_004299554.1| LysR family regulatory protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604199|emb|CBY25697.1| transcriptional regulator, LysR family [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667207|gb|ADZ43851.1| LysR family regulatory protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862269|emb|CBX72430.1| uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           enterocolitica W22703]
          Length = 307

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 131/279 (46%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLTHARQILGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMISGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRI-GALRDSTIHARLLGASRVRILASPDYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +I +L  H+L+ F        E  N  +    P G   I+  L  +S  ++    + G 
Sbjct: 180 HTIDDLANHSLLGFTQ-----PEFLNQWSLPHLPGGRTSITPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVI----TPSFTVYF 271
           GI  L D++ +++     LV +M D I     P   VY+
Sbjct: 235 GIVELSDFMTREDQLAGRLVEVMADQILETWQPINAVYY 273


>gi|319795193|ref|YP_004156833.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597656|gb|ADU38722.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 297

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F    +R+F   A+ G  T AA+ L + ++S SRQ+  LE  VG +L +R +    LTE+
Sbjct: 4   FSLSDVRLFTKAAQLGGLTPAADALSVPKASASRQLQRLEAMVGHQLLHRGSTRFALTEE 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +V   L+   + L   +   +G+LR+A     G+ LL  +L +F+  YP +
Sbjct: 64  GREFLVAAGQVLTILDDVMLSLSSGAGTLAGRLRVAAPHYYGRELLGVHLPDFMSAYPQL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +   N   D+  D AD AIR R       ++ R L    M   A   YL   +   S
Sbjct: 124 EVVVETGNDRADLFRDEADVAIR-RGREGCDEMVARHLKNEPMVLCATSDYLAPRQAIES 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H  +       K     +      R   E   S  Q +    I++  +   GI 
Sbjct: 183 VSDLAPHAFLVSEIEGRKKEISLSITGKTHRLNVE---SVFQSDDLELILKLTLAAKGIG 239

Query: 243 LLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L+P  + +   D+  L  ++  + +TP   +   Y  + +++ K+K F +++ 
Sbjct: 240 LVPLSLARSHLDSGALSAVLPALKLTPQ-EINLVYLPSRRHSPKIKTFVDYVL 291


>gi|288960422|ref|YP_003450762.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912730|dbj|BAI74218.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 310

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 127/300 (42%), Gaps = 23/300 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V  +G  + A  +L + +S+++R+I  LE  +G+KLF+R AR  T T  G +
Sbjct: 5   DDMYLFKCVVEAGGLSAAGRRLGMPKSTLARRIGELEERLGLKLFHRGARQFTPTNFGIE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  + +   +  + +   PSG L +     LG  L++    EFL   P +++ 
Sbjct: 65  CFEHCKTIASEADKLLVMAERARRSPSGFLHVVCPPVLGAVLVEALAAEFLASAPGVRLH 124

Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L       D     AD  I     P+  +SL+ RK++T      A   +L     P    
Sbjct: 125 LEESFGIFDPRGVQADLVIFPSFTPLPDASLVARKILTSPYILVAHRDFLARNGHPADPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--------EPRISCLQVNSYLSIMQYCV 236
           +L   N +  G          +W+ T+ R  G        EPR S     + L  +   +
Sbjct: 185 DLKPMNCLGLGS------RSSDWVWTLTR--GDRTEVVRFEPRFSTTLPTAVLQAVHRQL 236

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              GIA LP+ +  ++    +LVR+++       T+Y  YP     T   + F + + L+
Sbjct: 237 ---GIASLPEALCLNDLRSGDLVRVLDGWYPQPVTIYAIYPNNRTLTVAARQFLDLLVLR 293


>gi|255746215|ref|ZP_05420162.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262158705|ref|ZP_06029819.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262168886|ref|ZP_06036580.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|255735969|gb|EET91367.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262022585|gb|EEY41292.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|262029585|gb|EEY48235.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|327486015|gb|AEA80421.1| Transcriptional regulator, LysR family [Vibrio cholerae LMA3894-4]
          Length = 296

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 137/306 (44%), Gaps = 37/306 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT  G +  
Sbjct: 7   MRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTAAGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P +   ++
Sbjct: 67  QRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQVHFDVL 126

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185
             ++   +  +  D A+R  ++P    +LI R+L+ + M   A   YL     P+ + Q+
Sbjct: 127 ASDRFSQLVDERVDIALRFTQQP--DENLIARRLLEVGMVVCATQEYLAQ-HAPIELPQD 183

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY-CVLGS 239
           L  HN +        D + K  E F+ L   +    +    C    ++  I++  C L +
Sbjct: 184 LTHHNCLVHISGNKWDFV-KNNEQFSVLVNGNIRANDMGTLCRAALNHKGIIRLPCDLAN 242

Query: 240 GI-------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +       ALLPDY +               PS +++  Y   L  + +    R FI  
Sbjct: 243 PLLRAGQLQALLPDYYL---------------PSSSIWAVY---LSRSYQTPLVRQFIDF 284

Query: 293 KARDWK 298
            A  W+
Sbjct: 285 LAERWQ 290


>gi|15640912|ref|NP_230543.1| DNA-binding transcriptional activator GcvA [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121588120|ref|ZP_01677867.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121729625|ref|ZP_01682118.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147675583|ref|YP_001216373.1| DNA-binding transcriptional activator GcvA [Vibrio cholerae O395]
 gi|153216610|ref|ZP_01950537.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|153802278|ref|ZP_01956864.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|153817183|ref|ZP_01969850.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153824195|ref|ZP_01976862.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|153827045|ref|ZP_01979712.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|153831333|ref|ZP_01984000.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|227081071|ref|YP_002809622.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229505499|ref|ZP_04395009.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae BX 330286]
 gi|229510831|ref|ZP_04400310.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae B33]
 gi|229513005|ref|ZP_04402471.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae TMA 21]
 gi|229517952|ref|ZP_04407396.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae RC9]
 gi|229523307|ref|ZP_04412714.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae TM 11079-80]
 gi|229530002|ref|ZP_04419392.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae 12129(1)]
 gi|229608518|ref|YP_002879166.1| DNA-binding transcriptional activator GcvA [Vibrio cholerae
           MJ-1236]
 gi|254285568|ref|ZP_04960532.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|254848031|ref|ZP_05237381.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|262161181|ref|ZP_06030292.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae INDRE 91/1]
 gi|262168684|ref|ZP_06036379.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae RC27]
 gi|297581280|ref|ZP_06943204.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298498983|ref|ZP_07008790.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9655351|gb|AAF94058.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121547611|gb|EAX57710.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121628602|gb|EAX61080.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|124114182|gb|EAY33002.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124122160|gb|EAY40903.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|126512217|gb|EAZ74811.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126518283|gb|EAZ75508.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146317466|gb|ABQ22005.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|148873182|gb|EDL71317.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|149739086|gb|EDM53382.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|150424430|gb|EDN16367.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|227008959|gb|ACP05171.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227012715|gb|ACP08925.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|229333776|gb|EEN99262.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae 12129(1)]
 gi|229339670|gb|EEO04685.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae TM 11079-80]
 gi|229344667|gb|EEO09641.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae RC9]
 gi|229349898|gb|EEO14852.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae TMA 21]
 gi|229350796|gb|EEO15737.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae B33]
 gi|229357722|gb|EEO22639.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae BX 330286]
 gi|229371173|gb|ACQ61596.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae MJ-1236]
 gi|254843736|gb|EET22150.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|262022802|gb|EEY41508.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae RC27]
 gi|262028931|gb|EEY47584.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae INDRE 91/1]
 gi|297534596|gb|EFH73433.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297543316|gb|EFH79366.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 306

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 134/300 (44%), Gaps = 25/300 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 9   NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  L     +L E S K  G L I+         L   L +F    PDI ++
Sbjct: 69  YFLDIKDIFSSLAEATDKLLERSEK--GALTISLPPSFAIQWLVPRLADFNQQEPDIDVR 126

Query: 126 LILDNKDIDISMDYADCAI---RLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + D     D  D AI   R   P +++  L Q  L+ +      +P  L   +   
Sbjct: 127 IKAVDMDEGSLTDDVDVAIYYGRGSWPGLRADKLYQEFLIPL-----CSPALLLGNKPME 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            + +L  H L+   D   K  + F   N L  V+   G P  S   +     ++Q    G
Sbjct: 182 KLSDLAYHTLLH--DTSRKDWKQFAKENGLDNVNVNHG-PIFSHSTM-----VLQAAAHG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+AL  + + +   D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 234 QGVALGNNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 293


>gi|254250108|ref|ZP_04943428.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124876609|gb|EAY66599.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 301

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 96/194 (49%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDRLDGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +  GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALAELEAAEADLDCGRHEARGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +     AP YL     P
Sbjct: 121 HLRIDVSITDRFVDLVEEGIDLAVRIGPLADSTSLAVRRLGTQYGSLGVAPSYLARHGTP 180

Query: 181 LSIQELDKHNLITF 194
            S+ +L  H  I +
Sbjct: 181 QSLDDLKNHRTIAY 194


>gi|289664775|ref|ZP_06486356.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669239|ref|ZP_06490314.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 304

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 116/280 (41%), Gaps = 6/280 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+  R F  V   GS + AA  L L+Q ++ R ++ LE  + + LF R   GL  T+
Sbjct: 4   TISWELYRSFLAVLEEGSLSAAARALGLTQPTVGRHVAALEELLAVPLFVRSQTGLLPTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +       Q           G +RI+ +  +G  +L   L      +  
Sbjct: 64  AAQALRLHARAMADMAAALQRAAGRHGDALQGTVRISASEVVGAEILPPILAALRNAHAQ 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+L N+  D+    AD A+R+ +P Q   L+ R++  I +  +A P Y+     P 
Sbjct: 124 LRMELVLSNRVQDLLHREADVAVRMIRP-QQDLLVARRVGEIAIGLHAHPDYVDRHGVPQ 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H L+ F    P     F   A    P  E     L+ +S L+ +     G GI
Sbjct: 183 RPDDLAQHALVGFDTDTP-----FLRSARKGFPFWEHAAFALRADSDLAQLALIRAGCGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG 281
                 + +  P L+ ++   +  +  V+    + L+ + 
Sbjct: 238 GFCQAALARRTPRLLPVLPQQVGVALDVWVTMHQDLRASA 277


>gi|302527541|ref|ZP_07279883.1| LysR family transcriptional regulator [Streptomyces sp. AA4]
 gi|302436436|gb|EFL08252.1| LysR family transcriptional regulator [Streptomyces sp. AA4]
          Length = 311

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 121/281 (43%), Gaps = 44/281 (15%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F  VA +  FT AAEQ+ ++Q S+S+QI  LE +VG  LF+R    +TLTE G 
Sbjct: 7   FQQLAYFLAVAETRHFTRAAEQMRVAQPSLSQQIRALERDVGAGLFHRIRGNVTLTEAGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ- 123
            L  +   +  + ET    ++E      G++R+  T  L   LL   L  F   YP I+ 
Sbjct: 67  TLLPIARRILAETETAYRAIRELDELGRGRVRLGATPSLCTGLLPAMLAAFRRDYPGIEL 126

Query: 124 ---------IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
                    +Q  L    +D++M   D  +     ++S +L    LV I      AP   
Sbjct: 127 VLHESGSRDLQTALSEGGLDLAM-IVDSRVHDDSRLESRALFVEDLVVISPKNAPAP--- 182

Query: 175 KNCREPLSIQELDKHNLITFG---DL----IPKC-MEDFNWLATVDRPIGEPRISCLQVN 226
              R  + I  L    L+ F    DL    +  C  E F+ L           I   +++
Sbjct: 183 --VRGRMPIAALRDRPLVMFRQGYDLREATVAACRAEGFDPLFA---------IEGGEMD 231

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKD--------NPNLVRIM 259
           + L ++Q    G G+A++P  +V D         P L R++
Sbjct: 232 AVLELVQA---GLGLAVVPSTVVGDRFRRTQFTEPGLSRVV 269


>gi|167814514|ref|ZP_02446194.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
          Length = 241

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 13/242 (5%)

Query: 55  RGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKE 114
           R + LT +G++       V  ++E  + EL  S+  PSG+LR++    L   +L   L +
Sbjct: 1   RSIALTAEGARFLERCRRVLAEIEEAEQELSRSAHAPSGRLRVSLPA-LSAPVLP-VLAD 58

Query: 115 FLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
           F+  YPDIQ+ L   ++ +D+  +  D  +R  +P + S L  R+L T       +P Y 
Sbjct: 59  FMAAYPDIQLDLDFTDRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYF 117

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSI 231
                P +  +L  H  + +    P   +   W    A  D  +  PR   +  N+  + 
Sbjct: 118 ARRGTPRTPADLAHHTCLLY--RFPTTGKLERWPLRPAPGDADVEPPR--SMICNNVETR 173

Query: 232 MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + + + G G+A +PD+ V+D   +  L  +++  I    T +  +P     + KL+AF +
Sbjct: 174 VCFAIRGRGLACVPDFAVRDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVD 233

Query: 289 FI 290
           FI
Sbjct: 234 FI 235


>gi|290509466|ref|ZP_06548837.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289778860|gb|EFD86857.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 301

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 129/290 (44%), Gaps = 40/290 (13%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +++F  +  +GSF  AAE L + + ++++ +  LE E G++L  R  R L LT +G 
Sbjct: 4   FENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLTPEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSV--KP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           + +R +  +  + +    +L ES    +P  G+LR+   I   + L+  +L +F   +P+
Sbjct: 64  EFYRRSKPLLSQAD----DLLESFAPGRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L   +   D+  D  DC +R+   ++    + R L  + +   A+P YL     P 
Sbjct: 120 VEIVLSSSDVRRDMLRDGLDCLLRVGD-LEDGDYVARSLGEVALTTCASPGYLARYGAPA 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL---- 237
           ++++L  H  +             NW+ +  R I   R    +    ++I    VL    
Sbjct: 179 TLEDLQSHLAV-------------NWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDNSE 225

Query: 238 ---GSGIA----------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
               +G+A           L  YI  D+  LV I+ D   P   +   YP
Sbjct: 226 VFTAAGLAGLGMLQGMRFFLQPYI--DSGQLVEILPDFPAPRRPLSLLYP 273


>gi|238894404|ref|YP_002919138.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546720|dbj|BAH63071.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 304

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 4/189 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  +   GSF+ AA  L  S+   +  I  LE  +G +L  R  R +  T +GS 
Sbjct: 5   DTLTLFVRIVERGSFSAAAADLGFSRPVATAAIKALEASLGARLLQRTTRHVQPTAEGSL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   LE      + +    SG +R+    +L + LL   L +FL  YP I +Q
Sbjct: 65  YYQRCVSILAALEEAN---RSAGGSISGTIRVDVAGNLARTLLLPALPQFLARYPAITLQ 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    +D+D+  +  DC IR    +  S +I R L  +     A+P YL     P +I  
Sbjct: 122 IGESERDVDLVREGVDCVIR-GGHLPDSEMICRPLARLQEITCASPAYLARYGTPHTIDG 180

Query: 186 LDKHNLITF 194
           L  H  I F
Sbjct: 181 LAGHVAIGF 189


>gi|218670833|ref|ZP_03520504.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 268

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 6/274 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V + GS + AA +L L+Q +I R +  LE  +G +LF R   GL  T+    L    
Sbjct: 1   FLTVLQHGSLSAAARELGLTQPTIGRHVDALELAIGAELFTRSPNGLLPTDAALALEPYA 60

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +                + +G +RI+ +  +   +L   L      +P++QI+L   +
Sbjct: 61  ETLAATTAALLRTASSQRERVAGTIRISASEVIAVEVLPAILGPLQDAHPELQIELSASD 120

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              D+    AD A+R+ +P Q  +L+ R++  I +  +A   YL+    P S+ +L  H 
Sbjct: 121 AIEDLVNREADIAVRMAEP-QQDALVVRRIGDIPLGFHAHRRYLERYGIPQSVADLAHHR 179

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           LI F          +  L     P+ +      + +S L+ +     G GI L    + +
Sbjct: 180 LIGF-----DRQTAYVRLVMKRYPVPDGIKFAYRTDSNLAQLAAIRAGVGIGLCQIGLAR 234

Query: 251 DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           +N +LV ++ D        +     +LK++ + +
Sbjct: 235 ENADLVHLLADAFNIPLGTWVAMHASLKSSPRCR 268


>gi|77362065|ref|YP_341639.1| LysR family transcriptional regulator [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876976|emb|CAI89193.1| putative transcriptional regulator (LysR family) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 294

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 137/265 (51%), Gaps = 12/265 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           ++  D LR F  + + GSF  A+E L+LS S++SR+I  LE  + + L  R A  +TLT 
Sbjct: 3   NYSLDDLRYFCTIVKLGSFKKASESLNLSLSTLSRRIRLLEQTLQLTLLNRDAHRVTLTH 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    +++ +++  +  L +   +P GK+RI+  I +G++ L     +FLLLYP+
Sbjct: 63  TGELYYARYCKLFEEVDAIEQALSDEKQQPKGKIRISAPIYMGKHFLSAIFCDFLLLYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN-CREP 180
           IQ+ L   N  IDI     D A R+R P   + +I R+L   H      P+   +    P
Sbjct: 123 IQLDLRFSNDLIDIEKKGIDIAFRVRNPAIDNWVI-RELKLTHNIICGRPNQTTHLITHP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV-LGS 239
             ++E  K  +I FG L P  ++  N L      +   +   L+V+  + +M++ V  G 
Sbjct: 182 EQLEEQPK--VICFG-LAPWQLK--NKLTNEVYNVEPKKHIRLEVDE-IQMMKHAVESGV 235

Query: 240 GIALLPDYI---VKDNPNLVRIMED 261
           GI+ +PDYI   + ++  L RI+ D
Sbjct: 236 GISYIPDYIALPLIESGTLERILPD 260


>gi|26991925|ref|NP_747350.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|148550359|ref|YP_001270461.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|24987050|gb|AAN70814.1|AE016725_7 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
 gi|148514417|gb|ABQ81277.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
 gi|313501224|gb|ADR62590.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 303

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 116/262 (44%), Gaps = 9/262 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L  R +R  +LTE G
Sbjct: 3   DLNSLYYFTQVVEHGGFAPAGRALDMPKSKLSRRIADLEDRLGVRLLNRTSRHCSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E     ++ +  +P G +RI+    L  + +   L  ++L YP ++
Sbjct: 63  QAYYNRCLAMRVEAEGAAEIIERNRSEPRGLVRISCPTTLLNSWVGPMLTRYMLKYPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D A+R+R  P++++ ++ + L          P YL    +   
Sbjct: 123 LFIESTNRRVDLLHEGFDIALRVRFPPLENTDMVMKVLSNSTQCLVGQPQYLAQLPKGFD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL----ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            Q L     + +G        ++ W         R I  P    +  +   ++  + V G
Sbjct: 183 PQLLGTLPSVHWG----SAQREYQWELFQGEDNSRSIVIPHTPRMVTDDLFALRHFVVAG 238

Query: 239 SGIALLPDYIVKDNPNLVRIME 260
            GIA LP   V+++    R++E
Sbjct: 239 VGIAHLPRVAVREDLAAGRLVE 260


>gi|296161721|ref|ZP_06844524.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295888035|gb|EFG67850.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 312

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 135/302 (44%), Gaps = 28/302 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     VAR  SF  AA +L +S S++S  ++ LE  +G++LF R  R ++L+E G++ 
Sbjct: 8   ELEAVLAVARHRSFRAAATELDVSTSALSHAVAALEARIGVRLFNRTTRSVSLSEAGAQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSV---KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                 V   + T ++ ++++       SG LRI T++   +  +   +  FL  YPD++
Sbjct: 68  ---VDSVAPAISTIRVAIEQAGSFRDTLSGTLRINTSVGAARQAMPVFIA-FLQRYPDMK 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLI-----QRKLVTIHMHAYAAPHYLKNCR 178
           I L+ + + IDI ++  D  IRL + +    +      Q++   +   AY A H     +
Sbjct: 124 IDLVTEGRLIDIVVEGFDAGIRLAETVPQDMIAVPFGDQQRFAVVGSPAYFAQH-----K 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCM---EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            P +  +L  H  I     +P       +F       R  G+  ++  + N  L   +  
Sbjct: 179 APRTPADLLAHRCIR--TRMPSGAIYQWEFQRRGETIRIDGKGALTLDEPNLML---EAA 233

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G G+  L ++ V    +   LVR++ED   P   +   YP        L+A  + I  
Sbjct: 234 RAGLGVTYLTEWNVAADLEAGTLVRVLEDWTPPLDGLCLYYPGRRHVPAGLRALIDMIHE 293

Query: 293 KA 294
           +A
Sbjct: 294 RA 295


>gi|167900738|ref|ZP_02487943.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 322

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 19/196 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G    
Sbjct: 10  LETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGRLYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I+L 
Sbjct: 70  ATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRIELS 129

Query: 128 LDNKDIDISMDYADCAIRLR---------KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L +  +DI  +  D A+R+          KPI S+    R L+       A+P YL    
Sbjct: 130 LSDHYVDIVGEGFDLALRMGNYDLPSQIVKPIGSN----RGLLC------ASPGYLARRG 179

Query: 179 EPLSIQELDKHNLITF 194
            P +  +L +H+ + +
Sbjct: 180 RPTAPADLAQHDCVIY 195


>gi|254372548|ref|ZP_04988037.1| hypothetical protein FTCG_00111 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570275|gb|EDN35929.1| hypothetical protein FTCG_00111 [Francisella novicida GA99-3549]
          Length = 308

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 5/192 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++F  V   G+ + A  + +LS +SIS +I+ LE     KL  R  R +  T+ G KL
Sbjct: 6   ELKLFVAVINYGNLSAAGREFYLSPASISNKINALEEYYQTKLLIRTTRKIEPTKAGEKL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++  +LE  Q ++Q +     G ++I    DLG+ ++   L EF    P+IQ  +
Sbjct: 66  YTTAIKLLEQLENLQEDIQNNENTAEGIIKITIPFDLGKQIILPILDEFKEKNPNIQYDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +  +    D AIR    +  S+ I +KLV  +    A+P YLK     + I   
Sbjct: 126 NLSDDVMSYNQFPFDIAIRYGN-LPDSNFIAKKLVDNYRMLCASPEYLKK----MDISNT 180

Query: 187 DKHNLITFGDLI 198
           D  N++   D I
Sbjct: 181 DDINILQNCDFI 192


>gi|157373798|ref|YP_001472398.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157316172|gb|ABV35270.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 301

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 126/295 (42%), Gaps = 16/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VA  GSFT AA+ L +S+  +SR +  LE  +  KLF+R  R + LTE G +L 
Sbjct: 6   LQTFLAVAEEGSFTKAADVLDVSKGLVSRHVCNLEKALNSKLFHRTTRRIALTEVGEELF 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++       +I +++ + + SG L+++   + G+ L    +  FL  +P  QI LI
Sbjct: 66  TKAKQIQLLASEAEIRVKDITQEFSGDLKVSAPYEFGRALCDHVIPSFLRQHP--QINLI 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD   I   +   DC +  R   +  + +  K +    +            E  SI++L 
Sbjct: 124 LDFGPIKREIASGDCDVAFRAYEELPNDVVGKELGFIRNVLVCSKDFALHNEIKSIKDLH 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
               I  G       E +N L  V  D+         L+ N+Y SI      G GIA LP
Sbjct: 184 HCAFILNGQ-----NERWNQLELVNGDKEYKIEVGGTLRSNTYSSIFSLAKQGLGIASLP 238

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            Y V+    +  L+ ++ D    +  +   Y +      KL  F     L  ++W
Sbjct: 239 YYQVEGSLKSGELIHLLPDWAIKTHKLSLLYAQRRITPRKLVTFN----LAVKEW 289


>gi|77459903|ref|YP_349410.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383906|gb|ABA75419.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 299

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 7/195 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    +L+ F+ VA  GSFT AAE+L+L+Q +IS Q+  LE   G+ LF+R+ R + LT
Sbjct: 1   MSVSHAQLKAFHAVAVHGSFTKAAERLYLTQPAISDQVRKLEERFGVLLFHRNKRSVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L  +T  ++      Q  LQES    +G L +A  +D   ++L   +  F   YP
Sbjct: 61  DLGERLLAITQRLFVVEAEAQELLQESQALQTGSLILA--VDAPVHVLP-QIARFCERYP 117

Query: 121 DIQIQLILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            I +++   N D  +   +   AD A+ L + +    L+   L    M A+ + H+    
Sbjct: 118 GISVKIETGNTDESLFRLFNYQADLAL-LGRDVSDERLLCVPLRNDPMVAFVSRHHPWAE 176

Query: 178 REPLSIQELDKHNLI 192
           RE + +++LD   L+
Sbjct: 177 RESICLEDLDDTPLV 191


>gi|312958288|ref|ZP_07772809.1| transcriptional regulator [Pseudomonas fluorescens WH6]
 gi|311287352|gb|EFQ65912.1| transcriptional regulator [Pseudomonas fluorescens WH6]
          Length = 288

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 122/279 (43%), Gaps = 17/279 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD LR+   V+R GSF  A + L ++ S++SR+++ LE  +G  L  R   G  LT +G
Sbjct: 6   NWDDLRLLLAVSRRGSFLQAGQLLGVAASTVSRRLTQLEAALGEPLVERGVEGCWLTSRG 65

Query: 64  SKLHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             L  V       L   T +E   +    SG +R++       ++L+     F  L+P  
Sbjct: 66  QSLVDVALAAEAGLRRQTMVEGDGTQAALSGTVRVSAGEGFSASILEAA-NRFTALHPGC 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L++      I    AD A+R    +   SLI R L T+    +A   YL+ C  P +
Sbjct: 125 AVELLVTTDFHKIVRGVADIAVRTAH-LGEPSLIYRALGTLDYGVFAQAAYLQRC--P-A 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +      ++     L           A +D        + ++V+S+   ++    G G+A
Sbjct: 181 LTPTTAASIALLPPLDLLPPMRAAKAAGLDH-------AAIRVSSFNVQLESVRRGMGVA 233

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCY-PEALKNT 280
           +LP  + +    L  I  ++  PS  VY    P+ALK  
Sbjct: 234 VLPRLLAE---GLSEIFPEIELPSLDVYLVTRPQALKQA 269


>gi|251789634|ref|YP_003004355.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538255|gb|ACT06876.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 305

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 122/279 (43%), Gaps = 13/279 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +D +R F + A+  SFT AA  L ++ S++ + +S LE  +GIKL +R  R L LT +
Sbjct: 4   LSFDGIREFTLAAQLQSFTAAALVLGVTSSAVGKSVSRLEQRLGIKLLHRTTRKLVLTHE 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  +L   +  +   +  P G+LR+      G+  +   L +F   +  +
Sbjct: 64  GEIYLSSCLRIIDELRDIESNMSTGASSPKGRLRVDLPAAFGRRHIAPMLIDFAKPFSQL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +    + ID+  +  D A+R+        L+ RKL    +   A+P YL N     +
Sbjct: 124 DLTVTFSERTIDMVGEGVDLAVRIGDLHNDPELVARKLGAQELVICASPDYLSNAPPVTN 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLG 238
             +L +H      D I    +       ++   GE     ++V   L     ++Q  + G
Sbjct: 184 KDDLLQH------DCIIGWRKGLRAAWLLNNAKGELEQQQIRVRHELGDGEMMLQATLNG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYP 274
            G++ LP +++ +   +  LV ++++       ++  +P
Sbjct: 238 CGLSQLPTWLIAEHLQSGALVTVLDNYAGAKMPIHVIWP 276


>gi|153827766|ref|ZP_01980433.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148876611|gb|EDL74746.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 307

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 137/306 (44%), Gaps = 37/306 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT  G +  
Sbjct: 18  MRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTAAGEEAL 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P +   ++
Sbjct: 78  QRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQVHFDVL 137

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185
             ++   +  +  D A+R  ++P    +LI R+L+ + M   A   YL     P+ + Q+
Sbjct: 138 ASDRFSQLVDERVDIALRFTQQP--DENLIARRLLEVGMVVCATEEYLAQ-HAPIGLPQD 194

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY-CVLGS 239
           L  HN +        D + K  E F+ L   +    +    C    ++  I++  C L +
Sbjct: 195 LAHHNCLVHISGNKWDFV-KNNEQFSVLVNGNIRANDMGTLCRAALNHKGIIRLPCDLAN 253

Query: 240 GI-------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +       ALLPDY +               PS +++  Y   L  + +    R FI  
Sbjct: 254 PLLRAGQLQALLPDYYL---------------PSSSIWAVY---LSRSYQTPLVRQFIDF 295

Query: 293 KARDWK 298
            A  W+
Sbjct: 296 LAERWQ 301


>gi|78066337|ref|YP_369106.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967082|gb|ABB08462.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 308

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 128/301 (42%), Gaps = 19/301 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF      GS   A  +L  S +++SR I+ LE   G  L YR  R + L+E G +
Sbjct: 5   DAMKVFVATLDEGSLAGAGRKLGRSPAAVSRAIAFLEEHTGTALLYRTTRTIRLSEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   LE   + + +    P G L +   +  G+++L+  L EF+  +P + I+
Sbjct: 65  YAAACRRILSDLEEADMLVADERSAPRGLLTVTAPVAAGEDVLRALLDEFIERHPAVSIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ + +  +  D A+R+   +  S+L+   +  +     A+P YL       +  +
Sbjct: 125 LQLLDRPVSLIDEGMDVALRIAH-LTDSTLVAIPVGAVRRVVVASPDYLAKHPAIETPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
           L +H +I+        M  F   +W      P   P++        +N+    +   V G
Sbjct: 184 LAQHRIIS--------MTHFGLDSWSFPPSAPSALPQVVQFAPRFIINTIRGAVASAVAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+  L  Y V +   +  L  ++ D       ++   P    +  K++AF +F   + R
Sbjct: 236 HGVTRLFSYHVAEPVRSGALRIVLRDSEHAPLPIHLVTPYGRLSVPKVRAFVDFAAPRLR 295

Query: 296 D 296
           +
Sbjct: 296 E 296


>gi|262376086|ref|ZP_06069317.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145]
 gi|262309180|gb|EEY90312.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145]
          Length = 309

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 120/276 (43%), Gaps = 7/276 (2%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE ++ + L  R  R L+LTE 
Sbjct: 3   DQLRAMGVFACVVEKNSFSGAARELGITTSAVSQQIRSLEHDMEVVLLNRSTRKLSLTEA 62

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+    E  ++ + E      G+LRI +  +L  N +   L  ++  +  +
Sbjct: 63  GQAFFHSCQEMLSAAERGKVRINELRDDLVGELRIVSLPELCANHVIPALSHWIAAHRGL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L  +N ++D+     D A+R  +     +L    L+ I     A P Y+        
Sbjct: 123 AVHLETNNHEVDLLDGRVDIALRFEQKNDEHNLQVVPLMQIEQILVATPSYINQSTIISK 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H ++    L       F  + T ++   E + S    N+ L     C+ G+GIA
Sbjct: 183 PDDLKNHEVLPLTHLKNHQYYHFQHVNTAEKAEFELK-SRFSTNNGLVAKSMCLQGNGIA 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
            +     K    N  LV ++ +   PS T+Y   P+
Sbjct: 242 KVLYLDAKKDLLNGTLVEVLPEWRLPSITLYAVIPK 277


>gi|229505812|ref|ZP_04395321.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229510333|ref|ZP_04399813.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229517535|ref|ZP_04406980.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229528058|ref|ZP_04417449.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229605345|ref|YP_002876049.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254850213|ref|ZP_05239563.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|229334420|gb|EEN99905.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229345571|gb|EEO10544.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229352778|gb|EEO17718.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229356163|gb|EEO21081.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229371831|gb|ACQ62253.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254845918|gb|EET24332.1| transcriptional regulator [Vibrio cholerae MO10]
          Length = 300

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 137/306 (44%), Gaps = 37/306 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT  G +  
Sbjct: 11  MRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTAAGEEAL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P +   ++
Sbjct: 71  QRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQVHFDVL 130

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185
             ++   +  +  D A+R  ++P    +LI R+L+ + M   A   YL     P+ + Q+
Sbjct: 131 ASDRFSQLVDERVDIALRFTQQP--DENLIARRLLEVGMVVCATQEYLAQ-HAPIELPQD 187

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY-CVLGS 239
           L  HN +        D + K  E F+ L   +    +    C    ++  I++  C L +
Sbjct: 188 LTHHNCLVHISGNKWDFV-KNNEQFSVLVNGNIRANDMGTLCRAALNHKGIIRLPCDLAN 246

Query: 240 GI-------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +       ALLPDY +               PS +++  Y   L  + +    R FI  
Sbjct: 247 PLLRAGQLQALLPDYYL---------------PSSSIWAVY---LSRSYQTPLVRQFIDF 288

Query: 293 KARDWK 298
            A  W+
Sbjct: 289 LAERWQ 294


>gi|163854312|ref|YP_001628610.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258040|emb|CAP40339.1| LysR-family transcriptional regulator [Bordetella petrii]
          Length = 305

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 131/304 (43%), Gaps = 24/304 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G +L  R  R   +T+ G
Sbjct: 7   DLNDLYYFVQVVDHGGFAPAGRALGIPKSKLSRRIALLEARLGARLLMRTTRQFAVTDIG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  +  +  +  +P G +R+   + L    +   L  F++ YP +Q
Sbjct: 67  QTYYAHCKAMLVEADAAEEAVALTRAEPRGTVRVTCPVALLDARVADMLAAFMVQYPLVQ 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P++ S L+ R L        A+P  L++   P +
Sbjct: 127 LHLEETNRRVDVVAEGVDVAIRVRPPPLEDSDLVMRVLADRGQCLVASPALLQHTGVPRA 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235
             +L    L + G  +P+    +N L     P G       +PR   L     L++    
Sbjct: 187 PADLS--GLPSLGLGLPQGEHVWNLLG----PDGAHAAVRHQPR---LVTRGMLALRAAA 237

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-F 291
           V G GI  LP  ++++      LV ++ D       ++  +       G+L + R  I F
Sbjct: 238 VAGVGIVQLPTMLLREQFKRGELVTVLPDWAPRREIIHVVF---ASRRGQLPSVRALIDF 294

Query: 292 LKAR 295
           L  R
Sbjct: 295 LADR 298


>gi|28209924|ref|NP_780868.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28202359|gb|AAO34805.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 293

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 18/202 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   D  ++F  VA+  SF+ AA+ L+++Q ++S+ I  LE E+ I+LF R +RG+ LT
Sbjct: 1   MSIKLDLYKIFSEVAKHKSFSKAAKSLYMTQPAVSQAIMQLENELEIRLFTRTSRGVILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L   T+   + +   + +L ES     G L++     + +  L   L++F   YP
Sbjct: 61  NEGELLFEYTNSAINLINVAEKKLIESKNLLMGDLKLGVGDTISRYFLLPYLEKFHSSYP 120

Query: 121 DIQIQLI----------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
           +I++++I          L + +IDI++    C +    PI   SL   +L  IH      
Sbjct: 121 NIKLKIINRTTLELCVMLKSGEIDIAI----CNL----PINDPSLEVTELTDIHDIFVCG 172

Query: 171 PHYLKNCREPLSIQELDKHNLI 192
             Y     + +S++EL K  LI
Sbjct: 173 KKYKNKISKSISLKELSKFPLI 194


>gi|330878934|gb|EGH13083.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 243

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 2/195 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR-HARGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLAVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHIRMGCTEGFGSFFITPQLSHFLDNYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N     
Sbjct: 131 ISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQEYLDNHAPIQ 189

Query: 182 SIQELDKHNLITFGD 196
              +L  H  I++ D
Sbjct: 190 RKADLSDHVFISYVD 204


>gi|330014857|ref|ZP_08307994.1| transcriptional regulator, LysR family [Klebsiella sp. MS 92-3]
 gi|328532660|gb|EGF59448.1| transcriptional regulator, LysR family [Klebsiella sp. MS 92-3]
          Length = 171

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 82/166 (49%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++V+  V  + SF  AAE L   +S++SR +  LE  +G +L  R  R L++T +G +
Sbjct: 5   DAMQVYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTAEGRR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  ++   +      S +P+G+ ++     L ++ +   + EFL  YPD+++ 
Sbjct: 65  YYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPDLELI 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP 171
           L   +   DI  +  DC IR  +   S++L+ R L        A+P
Sbjct: 125 LCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASP 170


>gi|238026375|ref|YP_002910606.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237875569|gb|ACR27902.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 307

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 121/287 (42%), Gaps = 10/287 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F     +GSF+ AA +L + Q ++S+ I+ LE +VG+ L  R   GL  TE G + +   
Sbjct: 10  FVAAIETGSFSAAARRLGIGQPAVSKSIANLERQVGVPLLARTTHGLMPTEAGQQYYERA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +    E  +  ++ +    +G LR+   +   +  L   L+ FL  +PD+ ++L+LD+
Sbjct: 70  RRLLDDAEEAEQAVRGAGASLAGTLRVGVPVAFARLQLVPALESFLDAHPDLVVELLLDD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQ----RKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  D+  +  D A+R+ +   +         RK+         +  Y      P   Q+L
Sbjct: 130 RHADLGAERIDVALRIGQAAAAGGSGTPAGVRKIGESPRRVVGSHAYFARAGIPHLPQDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H ++         +  F    TV   +       L+V     +    + G G+A+  D
Sbjct: 190 ARHQVVVHDRRAGGAVWTFRRHDTV---LAVETSGRLRVREAEGVRAAALAGLGLAIGSD 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  D   +  L   +E    P   ++  +P     T + +AF  F+
Sbjct: 247 WLFADALRDGRLAAALEGWTLPPAELWAAFPAGRPATSRARAFVAFV 293


>gi|218462103|ref|ZP_03502194.1| LysR family transcriptional regulator [Rhizobium etli Kim 5]
          Length = 307

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA   + +  A +L + QS+++R ++ LE  VG+ L  R  R +TLTE+GS+ +   
Sbjct: 15  FVRVAERANLSVVARELGVGQSTVTRHLNELEEAVGVALLSRTTRRVTLTEEGSRYYTNC 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            ++   +E    E +++   P+G +R++ T  LG   +   +  F   +PDI+I L L +
Sbjct: 75  LQILRLVEQAAEEARDARQAPAGAVRLSCTAALGVMHVTRMIFAFQDRHPDIRIDLNLTD 134

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + ID+  +  D A+RL  P+  SS+    +         AP YL     P    +L ++ 
Sbjct: 135 ERIDLVREGVDVALRL-GPLADSSMKLHAVGESQRLLVGAPAYLSARGRPERPADLSRYE 193

Query: 191 LITFGDL 197
            +   ++
Sbjct: 194 TVVMSNV 200


>gi|33592695|ref|NP_880339.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33572341|emb|CAE41896.1| probable LysR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332382110|gb|AEE66957.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 300

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AAEQL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLDELQAFVAVVDTGSITAAAEQLGLTVSAASRTLGRLEEKLQTTLVRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+   +    +   +   + ++    ++P+G+LR+        ++L   +  F   YP
Sbjct: 61  EEGAAFLQHARAILASVGEAEEQMAARRMRPAGRLRVDAATPFMLHVLVPLIAGFHARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  +   +D+     D A R+   ++ S+L  R + T  +   A+P YL+    P
Sbjct: 121 EVELELNSNEGIVDLIEKRTDVAFRI-GVLKDSTLHARAVGTSRLRVLASPAYLERRGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               +L +H L+ F    P+ + D  W L   D  +   R   +  +S  ++    + G 
Sbjct: 180 TRTAQLAQHALLGFTQ--PETLND--WPLRDADGAVLRIR-PTIASSSGETLRHMALAGL 234

Query: 240 GIALLPDYIVKDNPN-------LVRIMEDVITPSFTVYF 271
           GI  L D++  ++           R   DV  P   VY+
Sbjct: 235 GIVCLSDFMTGEDRRAGALVQLFARQTLDVRQPVNAVYY 273


>gi|76809415|ref|YP_331745.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|254188235|ref|ZP_04894747.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254261447|ref|ZP_04952501.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|76578868|gb|ABA48343.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|157935915|gb|EDO91585.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254220136|gb|EET09520.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 322

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 19/196 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G    
Sbjct: 10  LETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGRLYL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I+L 
Sbjct: 70  ATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRIELS 129

Query: 128 LDNKDIDISMDYADCAIRLR---------KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           L +  +DI  +  D A+R+          KPI S+    R L+       A+P YL    
Sbjct: 130 LSDHYVDIVGEGFDLALRMGNYDLPSQIVKPIGSN----RGLLC------ASPGYLARRG 179

Query: 179 EPLSIQELDKHNLITF 194
            P +  +L +H+ + +
Sbjct: 180 RPTAPADLAQHDCVIY 195


>gi|229018706|ref|ZP_04175558.1| Transcriptional regulator, LysR [Bacillus cereus AH1273]
 gi|229024949|ref|ZP_04181378.1| Transcriptional regulator, LysR [Bacillus cereus AH1272]
 gi|228736284|gb|EEL86850.1| Transcriptional regulator, LysR [Bacillus cereus AH1272]
 gi|228742594|gb|EEL92742.1| Transcriptional regulator, LysR [Bacillus cereus AH1273]
          Length = 283

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 29/259 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L VF+ VA+ G+ +HAA+ L+  QS ++ +I  LE E+G+ LFYR+ +G+TLT  
Sbjct: 1   MDIKDLTVFFEVAKEGNISHAAKNLNYVQSGVTMRIKQLEIELGVPLFYRNGKGVTLTSN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++ H ++ +   +Q +  +P G L+I  T       L   L  +   YP++
Sbjct: 61  GEILLTYAKQIIHLMDQSIQAVQSNGTEPKGTLKIGCTESTTAVRLPPILTTYYEKYPEV 120

Query: 123 QIQLILDNKD------IDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           ++ L  +  D      ++  +D A  A  ++   + + S  + +LV I            
Sbjct: 121 ELILETNTTDQLTQLVLERKLDGALIAGNIQHTELHTLSFREEELVLI------------ 168

Query: 176 NCREPL-SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
             + PL S + + + NL+ F  G    K +E  NWL   +  I   RI  L+  +  +I+
Sbjct: 169 -SKTPLPSFKTIGELNLLAFSQGCYYRKLLE--NWLQ--EEGISPKRI--LEFGTIEAIL 221

Query: 233 QYCVLGSGIALLPDYIVKD 251
                G G A++   I+ D
Sbjct: 222 ACVKSGMGTAIMLKSIIPD 240


>gi|158334782|ref|YP_001515954.1| LysR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158305023|gb|ABW26640.1| transcriptional regulator, LysR family [Acaryochloris marina
           MBIC11017]
          Length = 294

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 1/190 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  +A     + AA+ L LS +S S ++  LE  +G +LF R  R ++LT  G    
Sbjct: 6   LRLFLRIAARSGVSAAAQDLSLSPASASARLVKLEETLGFRLFNRTTRAVSLTTDGEAFL 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   LET    ++    +  G LRI      G+  +   L EF   +P + + L 
Sbjct: 66  PYAQQMIETLETGLSAVKGQGAEAEGVLRITMPGSFGRMYIIPALAEFHARHPRVSLDLR 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+     D  IR   P+  SSL+ RKL        A+P YL+    P +  +L 
Sbjct: 126 LSDEVLDVVEGAYDLIIR-NAPLADSSLMLRKLAADRRILVASPTYLEQHGTPATPDDLV 184

Query: 188 KHNLITFGDL 197
            H  ++  ++
Sbjct: 185 NHQCVSLAEV 194


>gi|330810905|ref|YP_004355367.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379013|gb|AEA70363.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 307

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 127/296 (42%), Gaps = 18/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F   A  GSF  AA +L ++ +++ + ++ LE  +G++LF R  R L LTE G 
Sbjct: 4   FNSIECFVRSAEVGSFAEAARRLSVTPAAVGKSVAKLEARMGVRLFQRSTRSLRLTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    ++ ++     L  +  +P+G L+++     G+  +   L EFL  YP I  
Sbjct: 64  LFLGEVGSSFNTIQNAVANLASAGGQPAGTLKVSMGTAFGRLYVVPLLGEFLRRYPAINP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+     D AI     +    ++ RKL   H    A+  YL+        +
Sbjct: 124 DWHFDNRQVDLIGQGFDAAIGGGFEL-PQGVVARKLTVAHRVLVASTDYLQAHAAVTEPE 182

Query: 185 ELDKHNLITFGDLI--PKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQY-CV---- 236
           +L  H     G LI  P+     +W L + +R   E     L+    +S  +  C     
Sbjct: 183 DLSLHQ----GILIRSPQTGRVRSWQLTSRNR---EHSPLTLKTRMTMSDSEADCAAAAQ 235

Query: 237 -LGSGIALLPDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LG G+  +P  +   +N  L R++ D       +   Y E     GK +AF +FI
Sbjct: 236 GLGIGLVSMPIAVPFLENGTLQRVLPDWYVDDGNISIYYAEHKLLPGKTRAFVDFI 291


>gi|319648211|ref|ZP_08002428.1| hypothetical protein HMPREF1012_03467 [Bacillus sp. BT1B_CT2]
 gi|317389846|gb|EFV70656.1| hypothetical protein HMPREF1012_03467 [Bacillus sp. BT1B_CT2]
          Length = 305

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 118/269 (43%), Gaps = 27/269 (10%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VAR  SFT AA+ L++SQ +IS+ I  LE E+GI+LFYR  R + LT+ G
Sbjct: 2   DIRHLTYFLEVARLKSFTKAAQSLYISQPTISKMIKNLEEELGIELFYRRGRQIELTDAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             ++    E+    +    EL +      G +RI     +G       + +F   YP++ 
Sbjct: 62  QSMYVQAQEITKSFQNLTSELNDLMDVKKGHVRIGLPPMIGSGFFPKVIGDFRDKYPNVT 121

Query: 124 IQLI------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            QL+      +     D S+D     +  ++ I  S  I ++ + + +H    P +    
Sbjct: 122 FQLVEHGSVKVQEGVEDGSLDIGVVVLPAKEEIFHSFTIVKEDLMLIVH----PSHRFAD 177

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            E + +++L +   I F        EDF      +R I     +  Q N      Q+  +
Sbjct: 178 AEEIELRQLSEEPFIFF-------REDF---VLHERIITACLKAGFQPNVIYETSQWDFI 227

Query: 238 GS------GIALLPDYIVKD-NPNLVRIM 259
                   GI LLP+ I +D +P  VRI+
Sbjct: 228 SEMVSANLGIGLLPERICRDLDPERVRII 256


>gi|240948269|ref|ZP_04752655.1| DNA-binding transcriptional activator GcvA [Actinobacillus minor
           NM305]
 gi|240297308|gb|EER47849.1| DNA-binding transcriptional activator GcvA [Actinobacillus minor
           NM305]
          Length = 296

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 134/300 (44%), Gaps = 36/300 (12%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F   AR  +FT AA+ L ++Q+++S QI  LE  +GIKLF+R  R L LTE G +
Sbjct: 9   NALKAFESAARHLNFTKAADDLFVTQAAVSHQIKLLEDFLGIKLFHRKNRLLELTETGLQ 68

Query: 66  LHRVTSEVYHKL--ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  +  K+   T +++L+ S       L I+TT   G + L   L +F   +PDI+
Sbjct: 69  YFEEIKPLLDKIASATEKVKLKAS----RQILSISTTPSFGMHWLVPRLNDFHQRFPDIE 124

Query: 124 IQLI-------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           ++L        L  KD D+++ Y +           ++L   +LV   +   A+P YLK 
Sbjct: 125 VRLTTMPQDEGLFGKDTDVAIYYGNG--------NWNNLEAIELVKARIMLLASPDYLKE 176

Query: 177 --CREPLSIQELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
               EP   ++L   NLI          M D   L  V+  IG P  S   +      +Q
Sbjct: 177 NPITEP---KDLAGKNLIHVCSYTKWNQMVDHLNLGNVNTEIG-PMFSTTSMG-----IQ 227

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFI 290
               G G+ +    + +D      ++E   T  +     Y  YP  +  + K+K F N+I
Sbjct: 228 AAKHGQGVVVANRMLAQDEIEAGTVIEPFSTDVYDEKAFYVVYPPQMAQSEKVKHFVNWI 287


>gi|240146706|ref|ZP_04745307.1| transcriptional regulatory protein [Roseburia intestinalis L1-82]
 gi|257201137|gb|EEU99421.1| transcriptional regulatory protein [Roseburia intestinalis L1-82]
 gi|291536290|emb|CBL09402.1| transcriptional regulator, LysR family [Roseburia intestinalis
           M50/1]
 gi|291538837|emb|CBL11948.1| transcriptional regulator, LysR family [Roseburia intestinalis
           XB6B4]
          Length = 306

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 10/147 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +    R+FY VA +G+ + AA++L++SQ +IS+ I  LE  VG KLF R +RG+ LT
Sbjct: 11  MNQNLSSYRIFYTVANTGNISKAAKELYISQPAISKSIQKLEEGVGCKLFSRSSRGVVLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L+   S  +  L   + +L+ S     G L+I  +  L + LL   L+EF+   P
Sbjct: 71  DEGKLLYDHVSSAFETLTLGEEKLKRSIELGVGHLKIGVSATLCKYLLLPYLQEFIRQNP 130

Query: 121 DIQIQL----------ILDNKDIDISM 137
            + I +          +L++  IDI +
Sbjct: 131 HVSISITCQSTNETLELLEDNKIDIGL 157


>gi|323499931|ref|ZP_08104890.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323315172|gb|EGA68224.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 310

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 127/298 (42%), Gaps = 27/298 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           FY  AR GSF  AA++L+++ ++IS+QI  LE  +G +LF R  R +TLT +G  L    
Sbjct: 14  FYTAARLGSFKLAAQELYVTAAAISQQIRQLEDFLGAELFLRQHRKVTLTMEGEILFEQA 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              +  L     ++ +    P+ +L I+T     Q+ L   +  F    PD+++ +   +
Sbjct: 74  QRGFDHLHRGIRQINQDP-NPN-QLSISTLPSFAQHWLVPRIGHFRQENPDLELMIEPTS 131

Query: 131 KDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  D      D  IR        I S  LI+  L  +    Y   H + + ++       
Sbjct: 132 ELADFQNSNLDLCIRYGPGDYPNITSELLIEELLYPVCHPIYQEQHGIYDLKD------- 184

Query: 187 DKHNLITFGDLIPKCMEDFN---WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
                +T  DLI     D +   WL  V     +P    L+ N    +++  +   G+AL
Sbjct: 185 -----LTGADLIEDYWRDLDWGIWLNNVGHKASKP---TLKYNGSHFVLEGALAVQGVAL 236

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
               + +   D   LVRI        +  + C P A     K+K F  +IF +A++ K
Sbjct: 237 AKHTLAQRYIDEGKLVRIGNLAQRTDYNYFLCAPRAYFKRAKIKRFCEWIFTQAQECK 294


>gi|261323627|ref|ZP_05962824.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261299607|gb|EEY03104.1| transcriptional regulator [Brucella neotomae 5K33]
          Length = 198

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 94/180 (52%), Gaps = 1/180 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  +  F+ AA ++  S++ +S+    LE E+G +L  R  R  +LTE G   
Sbjct: 6   RMRAFIDVVEAEGFSAAARKIGRSKALLSKYARELEDELGARLLNRTTRQFSLTEAGHTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+I + +
Sbjct: 66  YHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P   ++L
Sbjct: 126 RLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQRPEDL 184


>gi|229526403|ref|ZP_04415807.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229336561|gb|EEO01579.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
          Length = 300

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 137/306 (44%), Gaps = 37/306 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT  G +  
Sbjct: 11  MRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTAAGEEAL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P +   ++
Sbjct: 71  QRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQVHFDVL 130

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185
             ++   +  +  D A+R  ++P    +LI R+L+ + M   A   YL     P+ + Q+
Sbjct: 131 ASDRFSQLVDERVDIALRFTQQP--DENLIARRLLEVGMVVCATEEYLAQ-HAPIKLPQD 187

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY-CVLGS 239
           L  HN +        D + K  E F+ L   +    +    C    ++  I++  C L +
Sbjct: 188 LAHHNCLVHISGNKWDFV-KNNEQFSVLVNGNIRANDMGTLCRAALNHKGIIRLPCDLAN 246

Query: 240 GI-------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +       ALLPDY +               PS +++  Y   L  + +    R FI  
Sbjct: 247 PLLRAGQLQALLPDYYL---------------PSSSIWAVY---LSRSYQTPLVRQFIDF 288

Query: 293 KARDWK 298
            A  W+
Sbjct: 289 LAERWQ 294


>gi|170693311|ref|ZP_02884471.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141841|gb|EDT10009.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 321

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 113/236 (47%), Gaps = 3/236 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +    A SGSF+ A+ +L +   ++SR+++ LE  +  +L  R  R LTLT+ G  
Sbjct: 5   EAMSILVAAAESGSFSAASRKLRMPLPTVSRKVAELEAHLNARLLVRSTRKLTLTDAGVA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 ++  ++   +         P G+L +   +  G+  +   + +FL  + +I ++
Sbjct: 65  YLAACKQILEQVSEAESAAAGEYSAPRGELVVTAPVVFGRLHMLPVVSDFLAAFAEITVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L ++++ +  ++ D A+R+ K +  SS++  ++ T+     A+P YL    EP +  +
Sbjct: 125 LVLADRNLHLLDEHIDVALRIGK-LPDSSMVATQVGTVGRVVCASPQYLAQAGEPQTPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L + + I    L    + +F       + +  P  + L VN+  + +   + G G+
Sbjct: 184 LARFSCIVSDALPSSYVWEFGGHQAPQQTV--PIRARLSVNTVEAAIDAAIAGVGL 237


>gi|167561367|ref|ZP_02354283.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167568598|ref|ZP_02361472.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 300

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 144/305 (47%), Gaps = 21/305 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLH----RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G +L+    R+ +E++   E      Q+      G++R++     GQ ++   L  F  L
Sbjct: 61  GLRLYEHGRRIQNELFAAREAVTTLGQDLQ----GRVRLSVPSGYGQLVMSNWLIAFKRL 116

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           YP I + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P +    
Sbjct: 117 YPGIVLDVVFENRVEDLMRDEVDIAVRVMSEPPQ--NLVARDMGAVRYVACASPGFAATH 174

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCV 236
             P  + +L    +IT   ++ + +    +L      +  EP    L   ++L + Q  +
Sbjct: 175 GMPTELDQLFDAPVIT-ATVVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQSIL 230

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIF 291
            G G+ ++PDY+V D+     ++  +     ++     Y  Y     +T     F  F+ 
Sbjct: 231 AGLGVGIVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFVL 290

Query: 292 LKARD 296
            +AR+
Sbjct: 291 EEARN 295


>gi|94312572|ref|YP_585781.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356424|gb|ABF10512.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 288

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 118/277 (42%), Gaps = 10/277 (3%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           G+FT AA  L   +S +S  ++ LET +G KL  R  R + LT+ G  ++R  + ++ +L
Sbjct: 5   GTFTAAAAALDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTDAGGAVYRDVAPLFARL 64

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
              + E      +  G LRIAT  + G   L G +   L  +P + I + +    +D   
Sbjct: 65  REIRQETLAREERVQGMLRIATPYEFGAQQLGGVICRTLAAHPALDITVEISQGLVDPIR 124

Query: 138 DYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGD 196
           +  D A + +   +  S  I R++  I     AAP    +   P  +Q  D  ++ T   
Sbjct: 125 EGFDIAFVTVDTDLPDSGTIARRIWHIERGLVAAPSLAASL--PAQMQPEDLSHMPTLAT 182

Query: 197 LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNP 253
                 E       +  PI  PR+     N+ L  MQ  + G GIA +P    +      
Sbjct: 183 PGVSVWEFSRDGERISVPI-RPRMQTY--NAELR-MQAALAGIGIARVPMATAEAEIAQG 238

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LVR+M D   P   V+   P+      K++AF   I
Sbjct: 239 RLVRMMPDWPLPPLRVFALLPDRRLQPRKVRAFMEAI 275


>gi|323530275|ref|YP_004232427.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323387277|gb|ADX59367.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 307

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 129/294 (43%), Gaps = 17/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +GS T AA    LS + I   +  LE  +G +L +R  R   ++  G   +
Sbjct: 7   MTVFVRVVETGSLTAAAVACDLSPTMIGSHLQALEARLGTRLIHRTTRKQRVSAFGQTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   ++ ++    +    P G+LR+   +      L   + E+   YP++++ ++
Sbjct: 67  ERCVEILGLIDDSERLAHDHLATPRGRLRVTAPVMFNNECLIPAIAEYCDRYPEVKLDIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+  D  + AIR+   + +  L+ R L+   +   A+  YL+    P +   L 
Sbjct: 127 ATDAVSDLLNDGFEAAIRI-GALGNPDLVARPLMPYRLVLCASRAYLRAHGVPATPDALR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLA-----TVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
            H  +T+    P   E   W A      ++ P G   +     L++++  ++ +  + G 
Sbjct: 186 THQCLTYA--YPPRSE---WYAGEPEWVLNGPEGRVAVHVDGRLKIDNSEALRRAALRGL 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIALLP  +V D+     LV ++ D   P   +   Y      + KL++F +F+
Sbjct: 241 GIALLPAILVNDDLRSKRLVEVLPDYAAPERQLNLLYLPDRHMSPKLRSFIDFV 294


>gi|229522577|ref|ZP_04411993.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229340562|gb|EEO05568.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 300

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 5/188 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT  G +  
Sbjct: 11  MRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTAAGEEAL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P +   ++
Sbjct: 71  QRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQVHFDVL 130

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185
             ++   +  + AD A+R  ++P    +LI R+L+ + M   A   YL     P+ + Q+
Sbjct: 131 ASDRFSQLVDERADIALRFTQQP--DENLIARRLLEVGMVVCATQEYLAQ-HAPIELPQD 187

Query: 186 LDKHNLIT 193
           L  HN + 
Sbjct: 188 LAHHNCLV 195


>gi|218528270|ref|YP_002419086.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218520573|gb|ACK81158.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 302

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 129/306 (42%), Gaps = 27/306 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  VA +G F   A     S S +S  +  LET +G++LF R  R +  T
Sbjct: 1   MAMDLGDLAAFVSVAEAGGFREGARASGTSASGLSEAVRRLETRLGVRLFNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    +    ++E     +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGARLLERLTPALGEVEAALDVVNGFRDRPAGTLRLNVPVSAARLVLPRIVPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI------QRKLVTIHMHAYAAPHYL 174
           DI++ ++ ++  +D+     D  IR  + ++   +       Q++  T      AAP YL
Sbjct: 121 DIRLDVVAEDSFVDVLAAGCDAGIRYDERLEQDMIAVPIGPRQQRFATA-----AAPAYL 175

Query: 175 KNCREPLSIQELDKHNLI----TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS 230
                P    EL  H  I      G  I    E    +  V+ P G P I  +   + L+
Sbjct: 176 DRHGHPQHPSELLDHACIGGRFASGATIAWEFERHGEVVRVN-PSG-PLIVRVGAATDLA 233

Query: 231 IMQYCVLGSG-IALLPDYIVKDNPNL-VRIMEDVITPSF----TVYFCYPEALKNTGKLK 284
           +    V G G I L  D++    P+L    +E V+ P +      +  YP        L+
Sbjct: 234 V-DAAVAGVGIITLFEDWL---QPHLDSGALEPVLEPWWQQFPGPFLYYPGRRYLPAPLR 289

Query: 285 AFRNFI 290
           AF +FI
Sbjct: 290 AFIDFI 295


>gi|254255102|ref|ZP_04948419.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124899747|gb|EAY71590.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 306

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 8/191 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE   +
Sbjct: 5   DKLRIFRSVVEMRSFTRAADIHSLARPVVSRAVADLEARFGSRLLHRTTRQVSLTETAER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIA--TTIDLGQN--LLQGNLKEFLLLYPD 121
           ++   + V  +L+  ++E Q  + +P G LR+   TT  L ++  L+ G    F   +P 
Sbjct: 65  IYERCAAVLDELDALELEAQAQTREPEGLLRVVAHTTAALYRHVPLIAG----FKAAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L  + +D+  +  D  I +   + S + + R +  I     A P YL+    P+
Sbjct: 121 IRLDVTLTERPVDLVGEGYDIGIVVPYMLTSETTVVRLIERIPFVIVATPAYLRAHSHPV 180

Query: 182 SIQELDKHNLI 192
           +  +L  H  +
Sbjct: 181 TPADLADHPFV 191


>gi|75764570|ref|ZP_00744028.1| Transcriptional regulators, LysR family [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218898553|ref|YP_002446964.1| transcriptional regulator, LysR family [Bacillus cereus G9842]
 gi|228901972|ref|ZP_04066138.1| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 4222]
 gi|74487942|gb|EAO51700.1| Transcriptional regulators, LysR family [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218542464|gb|ACK94858.1| transcriptional regulator, LysR family [Bacillus cereus G9842]
 gi|228857655|gb|EEN02149.1| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 4222]
          Length = 283

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 37/264 (14%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L VFY VA+  + +HAA+ L+  QS ++ ++  LE E+G+ LFYR+ +G+TLT  
Sbjct: 1   MDIKDLTVFYEVAKEKNISHAAKNLNYVQSGVTMRMKQLENELGVPLFYRNGKGVTLTSN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++ H ++ +   +Q + ++P G L+I  T       L   L  +   YP  
Sbjct: 61  GEILLTYAKQIIHLIDQSVKAVQSNGIEPRGTLKIGCTESTTAVRLPSILTAYYEKYP-- 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-----------VTIHMHAYAAP 171
           +++LIL++       +  +  IRL        +++RKL             +H + +   
Sbjct: 119 KVELILES-------NTTEQLIRL--------VLERKLDGAFIAGSTQHTELHTNIFREE 163

Query: 172 HYLKNCREPL-SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
             +   + PL S +++   NL+ F  G      +ED  WL   +  I   R+  L+  + 
Sbjct: 164 ELVLISKNPLSSFKDIGDMNLLAFSRGCYYRNLLED--WLQ--EEGISPKRV--LEFGTI 217

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN 252
            +I+     G GIA++   I+ D+
Sbjct: 218 EAILACVKSGMGIAIMMKSILNDH 241


>gi|220919973|ref|YP_002495276.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
 gi|219952393|gb|ACL62784.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 304

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 2/186 (1%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF      GS T AA+ L +S++  SR +  LE   G +L +R  R L+LT  G ++  
Sbjct: 8   QVFVETVERGSATAAADALGMSRAMASRHLGALEDWTGTRLLHRTTRRLSLTLAGERVLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
           ++ E+  +L      +      P+G LRIA    L +  L   L +FL  +P + I L  
Sbjct: 68  LSREMV-RLAANLHAVAGEGDSPNGLLRIAAATILSEEQLTPLLADFLRAHPRLSIDLRA 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  D  D AIR+   +     + RKL        A+P YL     PL   EL  
Sbjct: 127 SDRPVDLVEDRIDVAIRIGNQLDLGC-VARKLGECRSVLCASPRYLDERGTPLQPSELHA 185

Query: 189 HNLITF 194
           H  +T+
Sbjct: 186 HACLTY 191


>gi|161520089|ref|YP_001583516.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353732|ref|YP_001949359.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221209365|ref|ZP_03582346.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160344139|gb|ABX17224.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337754|dbj|BAG46823.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221170053|gb|EEE02519.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 310

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 124/290 (42%), Gaps = 18/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR GS   AA+ L LS  ++S+ +  LE  + ++LF R+ R L LT  G  L 
Sbjct: 10  LHTFVEVARCGSMKQAADLLCLSPGAVSQHVRHLEDRLAVRLFERNGRELELTGTGRALF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +  + ++E+    L  ++ +   +L + TT       L   L  F   YP+I+I + 
Sbjct: 70  DALAGGFREIESAWANLHGANRRVV-RLTVTTTASFANTWLVQRLGAFNAHYPEIEITID 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              + +D+  DY D AIR     Q       ++ T  +    +P  L   R      +  
Sbjct: 129 TRPQLVDLRRDYVDVAIR-HGLGQYPGHASFRIWTPELWPVCSPQLLDPARPIAQPADCL 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGIAL 243
            + L+   D     +    WL    + I +PR    Q  +  S    +++  V   GIAL
Sbjct: 188 AYPLLQDADRADWVL----WLRA--QGIEDPRA---QRGASFSDDALLIKAAVASQGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + D   +D      LVR++        + Y    EA ++  K+ AFR+++
Sbjct: 239 VRDIYARDEIAAGRLVRVLARPWPTELSYYVVCNEARRDEWKIVAFRDWL 288


>gi|13470425|ref|NP_101993.1| transcriptional activator AmpR [Mesorhizobium loti MAFF303099]
 gi|14021166|dbj|BAB47779.1| transcriptional activator; AmpR [Mesorhizobium loti MAFF303099]
          Length = 303

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 123/299 (41%), Gaps = 31/299 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF   AR GSFT AAE+L ++QS+ S QI  LE   G  LF R  R + LTE G +L 
Sbjct: 11  IRVFEAAARLGSFTKAAEELGMTQSAASYQIKVLEERAGTPLFIRKTRQIALTEAGQQLA 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S  +  L    +  +  +   +G L + T      N L   L  F L++PD+ +++ 
Sbjct: 71  PHASGAFSALADAWVATKGGA---TGVLSVTTMETFATNWLAVWLGTFQLMHPDLAVKVN 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              + +D + +  D  IR       S L    L         +P   ++       ++L 
Sbjct: 128 TSPRLVDFTREDMDIGIRTGTG-NWSGLTAHYLFKADYTPMLSPKLAESVGGIRRPEDLY 186

Query: 188 KHNLITFGDLIPKCMEDFNWL------ATV----DRPIGEPRISCLQVNSYLSIMQYCVL 237
           K         +P C  D  W       A V    DR I  P +     ++  ++      
Sbjct: 187 K---------VPLCCADDPWWKIWFEAAGVPFEPDRVIAGPMLGSQAYDAMAALTD---- 233

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             G A+L   I      N  L++  + + +     +  + E+ +N  K+K FR+++  +
Sbjct: 234 -RGAAILTRNIYSALLANGQLIQPFDVLGSDGDGYWLVHLESRRNVPKIKVFRDWVLAQ 291


>gi|262041343|ref|ZP_06014550.1| glycine cleavage system transcriptional activator [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259041312|gb|EEW42376.1| glycine cleavage system transcriptional activator [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 297

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 23/243 (9%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VAR GS T AA ++ ++ S++S+ I  LE  VG+ LF RH RG+ +TE+G +L
Sbjct: 9   SLRSFEAVARLGSVTQAAHEMSVTHSAVSQHIKQLEALVGVTLFIRHGRGVRITEEG-RL 67

Query: 67  H--RVTSEVYHKLETTQIELQESSVKPSG-KLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++   + H  + T++      +KP   ++ +AT    G + L   L  F   +P I 
Sbjct: 68  YALQIREALQHIADATRM----VQIKPRTLEVTLATLPSFGCHWLLPRLARFQARHPQIA 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+     +++  +  D AIR+ +      +  R L        AAP Y +    P + 
Sbjct: 124 VRLLTSLAVVNLQQEGIDLAIRMGQG-DWEGMESRHLFADEQLVVAAPGY-RGGNLPTTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFN-WL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           Q +   ++I         ME +N W   A +++PI     + L++N    +++   LG+G
Sbjct: 182 QAIAASDIIF-------SMESWNAWCSQAGLEKPIVP---AGLRLNDSNLVLEAVRLGAG 231

Query: 241 IAL 243
           +AL
Sbjct: 232 VAL 234


>gi|53718318|ref|YP_107304.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|167917641|ref|ZP_02504732.1| putative LysR family transcriptional regulator [Burkholderia
           pseudomallei BCC215]
 gi|254187670|ref|ZP_04894182.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254296219|ref|ZP_04963676.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52208732|emb|CAH34668.1| putative LysR family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|157805694|gb|EDO82864.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157935350|gb|EDO91020.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 310

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 1/167 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     SGK+R+++T D G++ L   L EF   +P++   + 
Sbjct: 67  NCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRHQLLDWLDEFNTRHPEVTFAVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
             +   ++  D  D AIR   P    +LI R+L        A+P ++
Sbjct: 127 ASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCASPAFV 172


>gi|332529780|ref|ZP_08405734.1| transcriptional regulator lysr family protein [Hylemonella gracilis
           ATCC 19624]
 gi|332040801|gb|EGI77173.1| transcriptional regulator lysr family protein [Hylemonella gracilis
           ATCC 19624]
          Length = 320

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 124/274 (45%), Gaps = 20/274 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A  GS   AA +L +S  + S+ ++ LET +  +LF+R  R ++LT+ G   HR+
Sbjct: 11  TFIKAAELGSLRKAALELGISPQAASKALAQLETHLDARLFHRTTRVMSLTDAG---HRL 67

Query: 70  TSEVYHKLETTQIELQES-SVKP--SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +V   +   Q  LQ + S K   +G LRI       Q ++   ++EF  L+P IQ  +
Sbjct: 68  LEDVQPSVLGMQRALQAARSAKDEFAGPLRITGPRTTFQPIVWRLVEEFCDLHPGIQPDV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +LD++  +   D  D   RL  P     +I R+L  + M    AP Y +    P S+ +L
Sbjct: 128 LLDDRIGNWVEDRVDVGFRL-GPSPHEGVIARRLFPVQMPICGAPSYFQRHGVPDSLADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLG------S 239
             H    +    P   +   W   + D+   +P +  +  N  L  +Q  + G      +
Sbjct: 187 ASHRCSAYRH--PSTGKVLPWRVKLGDQAADQPVVPAICSNDELFELQAVLAGKVLGQLA 244

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           G+   P YI      LV I+ D + P++  YF Y
Sbjct: 245 GVTAAP-YIRSG--QLVPILVDHM-PNYANYFVY 274


>gi|332534688|ref|ZP_08410519.1| putative transcriptional regulatory protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035900|gb|EGI72382.1| putative transcriptional regulatory protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 296

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 1/181 (0%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           +  +GSFT AA+   +  SS+SR+++ LE  +G  L  R  R + LTE G   +    ++
Sbjct: 1   MVETGSFTKAAKAFGVPPSSLSRRVADLEKSLGATLLKRSTRIVKLTEVGQIYYNDVQQI 60

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
            ++LE +   ++     P G+L I++ +  G  +L   L EF  LYP+I + + L ++  
Sbjct: 61  LNQLEQSHETVRSYQTTPMGRLCISSMVSFGDKILLPLLDEFSALYPEIILDVSLSDELS 120

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
            +  D  D AIR      +  ++  KL+       A+P YL+    P ++ EL  H+ + 
Sbjct: 121 TLGRDDVDIAIR-GGYAPNERVLAIKLMDNGFIPVASPCYLQKFGVPTNVMELKGHSGLY 179

Query: 194 F 194
           F
Sbjct: 180 F 180


>gi|289646329|ref|ZP_06477672.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 271

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 15/226 (6%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
           +ISR+++ LE ++G++LF+R  R ++LT +G         + H  ET +  L+  +   S
Sbjct: 2   AISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFLPHAKTMLHASETARATLKGDTGTAS 61

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G LR+      GQ ++   L   +   P + I L L +  +DI     D AIR+   I+ 
Sbjct: 62  GVLRVTAPSVFGQTVIMPLLPVLMQENPALSIDLTLSDSIVDIVGMGIDVAIRIAT-IRD 120

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
           S+L+ R L        A+P YL    +P  ++EL  H  I         +    W +   
Sbjct: 121 SALVARSLAPNARVVCASPDYLARHGKPALLEELRHHQGI--------ALHAMPWWSFTK 172

Query: 213 RPIGEPRISCLQ----VNSYLSIMQYCVLGSGIALLPDYIVKDNPN 254
              GEP     Q     NS  ++   C  G G+A+L  + V+   N
Sbjct: 173 N--GEPITIRAQGPFSANSVEAVRTACKQGMGLAMLTYWDVRQEIN 216


>gi|254474931|ref|ZP_05088317.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214029174|gb|EEB70009.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 303

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 133/298 (44%), Gaps = 25/298 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    + R GS + AA++L L+Q ++SRQ+  LE ++G+ L  R  + LTL+ +     
Sbjct: 14  LRALEALDRLGSASAAADELSLTQGAVSRQLQALERQLGVDLVRRDQKRLTLSAEAQTYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +  +++  + + +Q + +  +G L +A     G   L   L EF  L+PD+ I + 
Sbjct: 74  SEVRQALNQIAQSTLRVQAAPL--AGTLNLAILPAFGMRWLMPRLPEFARLHPDVTINMS 131

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYL--KNCREPLS 182
              +  +   +  D AI       P   + L++ +     M    AP  L  ++  +P +
Sbjct: 132 TRLEPFNFVGEGFDAAIHFGSADWPGTEALLLKHE----QMLPVCAPDLLNGRDIPDPAA 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I  L   ++ T     PK      W  +   P     +S    + + +I Q  + G G+A
Sbjct: 188 ILSLPLLHIQTR----PKAWA--QWFESHGVPAST-GLSGTMYDQFSTITQAALHGLGVA 240

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+PDY+V+ +    R++   + PS T      Y  +P        L  FR+++  +A+
Sbjct: 241 LMPDYLVEQDIATGRLV--ALHPSPTESRGAYYLVWPATRSKDPALVKFRDWLAGQAQ 296


>gi|123443844|ref|YP_001007815.1| LysR family regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090805|emb|CAL13687.1| LysR-family regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 305

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 131/279 (46%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LRI       Q+++   +  F  LYP
Sbjct: 61  EEGELFLTHARQILGAVDDAEEQIALRRLKPAGRLRINAAAPFMQHVIVPMISGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRI-GALRDSTIHARLLGASRVRILASPDYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +I +L  H+L+ F        E  N  +    P G   I+  L  +S  ++    + G 
Sbjct: 180 HTIDDLANHSLLGFTQ-----PEFLNQWSLPHLPGGRTLITPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVI----TPSFTVYF 271
           GI  L D++ +++     LV +M D I     P   VY+
Sbjct: 235 GIVELSDFMTREDQLAGRLVEVMADQILETWQPINAVYY 273


>gi|121587160|ref|ZP_01676935.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121726625|ref|ZP_01679861.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147671568|ref|YP_001215027.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153817673|ref|ZP_01970340.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153821761|ref|ZP_01974428.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227812619|ref|YP_002812629.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|298499821|ref|ZP_07009627.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|121548599|gb|EAX58651.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121630931|gb|EAX63311.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|126511829|gb|EAZ74423.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126520757|gb|EAZ77980.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146313951|gb|ABQ18491.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|227011761|gb|ACP07972.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227015699|gb|ACP11908.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|297541802|gb|EFH77853.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 307

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 137/306 (44%), Gaps = 37/306 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT  G +  
Sbjct: 18  MRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTAAGEEAL 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P +   ++
Sbjct: 78  QRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQVHFDVL 137

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185
             ++   +  +  D A+R  ++P    +LI R+L+ + M   A   YL     P+ + Q+
Sbjct: 138 ASDRFSQLVDERVDIALRFTQQP--DENLIARRLLEVGMVVCATQEYLAQ-HAPIELPQD 194

Query: 186 LDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY-CVLGS 239
           L  HN +        D + K  E F+ L   +    +    C    ++  I++  C L +
Sbjct: 195 LTHHNCLVHISGNKWDFV-KNNEQFSVLVNGNIRANDMGTLCRAALNHKGIIRLPCDLAN 253

Query: 240 GI-------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +       ALLPDY +               PS +++  Y   L  + +    R FI  
Sbjct: 254 PLLRAGQLQALLPDYYL---------------PSSSIWAVY---LSRSYQTPLVRQFIDF 295

Query: 293 KARDWK 298
            A  W+
Sbjct: 296 LAERWQ 301


>gi|238783353|ref|ZP_04627377.1| Transcriptional regulator, LysR family [Yersinia bercovieri ATCC
           43970]
 gi|238715776|gb|EEQ07764.1| Transcriptional regulator, LysR family [Yersinia bercovieri ATCC
           43970]
          Length = 298

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 15/288 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  +  +GS   AAE+  +  S+++R++  LE  +G +L +R AR +T T +G +
Sbjct: 3   DELALFVSIVETGSLRAAAEKAAIPASTLTRRLQKLEQHLGCRLLHRSARRMTPTSEGWQ 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     + H L+    +L  +  + SG +RI    DL  + L      FL  YP+++++
Sbjct: 63  YYEQCRPLVHSLQQATAKLDVTLHQISGLIRILAPADLANDNLAPAWVSFLTRYPEVRLE 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQ-RKL-VTIHMHAYAAPHYLKNCREPLSI 183
           L L+N   D+    AD AIR+    Q  SL+  RKL  +  +   A+P YL     P S+
Sbjct: 123 LELNNYTQDLIGSGADVAIRVGA--QPDSLLNMRKLGQSKEILLVASPDYLAKNGIPESM 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H+L+    L    M+      TV  +P G+       VN     +Q    G GI 
Sbjct: 181 DELRLHDLVISAPLSTWVMQHRQNGDTVRWQPQGK-----FCVNGIYLALQAAQAGLGIL 235

Query: 243 LLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             P  +   NP     LVR++ +       +Y  + +      +++A 
Sbjct: 236 FCPLSLCH-NPLQCGELVRVLPEWQGAPREIYAVWSQQRYVPARVRAL 282


>gi|126441651|ref|YP_001057764.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126221144|gb|ABN84650.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 310

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 1/167 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT++G    
Sbjct: 7   IRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTDEGRLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     LQE     SGK+R+++T D G++ L   L EF   +P++   + 
Sbjct: 67  NCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRHQLLDWLDEFNTRHPEVTFAVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
             +   ++  D  D AIR   P    +LI R+L        A+P ++
Sbjct: 127 ASDASSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCASPAFV 172


>gi|85713542|ref|ZP_01044532.1| Trancriptional regulatory protein, LysR family protein [Nitrobacter
           sp. Nb-311A]
 gi|85699446|gb|EAQ37313.1| Trancriptional regulatory protein, LysR family protein [Nitrobacter
           sp. Nb-311A]
          Length = 309

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 1/196 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  AA  L + +S +SR+I+ LE  +G++L  R  R  ++T
Sbjct: 1   MMQDLNDLYYFVQVVDHGGFAAAARALGMPRSRLSRRIAALEERLGVRLIQRSTRRFSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +R    +  + +  Q  +  S  +P G +R++    L    +   +  F+   P
Sbjct: 61  EIGQDYYRHCVAMLVEADAAQELIDRSRSRPQGIVRVSCPPPLLYFQVGEMVARFMAECP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           D+++ L    + +D+  +  D A+R+R  P++ + L+ R L        A+P  LK  R+
Sbjct: 121 DVEVHLESTPRRVDVIAEGIDIALRVRFPPLEDNDLVMRVLAESTQRLVASPALLKGLRQ 180

Query: 180 PLSIQELDKHNLITFG 195
           P    +L     I +G
Sbjct: 181 PPIPADLAALPSIGWG 196


>gi|261343731|ref|ZP_05971376.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
 gi|282568114|gb|EFB73649.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
          Length = 288

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 2/138 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V AR  SF  AA++LH++ S+ISRQI  LE  +GI LF R  R + LT +G  L 
Sbjct: 9   LRFFDVAARYESFVKAAQELHVTHSAISRQIRLLEEHLGIHLFERRNRAIFLTLEGKLLF 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T+ ++ +L  T  +L++        L    TI +    L   L +F   YPDI + LI
Sbjct: 69  QTTTSMFQQLAETVKQLEQPPDIQVVNLSCEPTIAM--KWLIPRLTDFYRQYPDITVHLI 126

Query: 128 LDNKDIDISMDYADCAIR 145
                ID +    D A+R
Sbjct: 127 AAGGPIDFAKTGVDLALR 144


>gi|126737340|ref|ZP_01753075.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126721925|gb|EBA18628.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 295

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 2/138 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SFTHAA++L+L+Q+++S+Q+  LE+ +   LF RHAR + +T  G    
Sbjct: 11  LRAFEATARHLSFTHAAQELNLTQAAVSKQVKLLESYLKAPLFVRHARSIEITRVGQAYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V ++ +  L     EL   S  P+  L I T+I  G   L  NL +F   +PDI++++I
Sbjct: 71  PVVNQAFEDLAYGTHEL--FSKGPNDALTIRTSIGFGVLWLAHNLHDFQNHHPDIKLRII 128

Query: 128 LDNKDIDISMDYADCAIR 145
            +  + + S  + D  IR
Sbjct: 129 SNVWNENSSEGHCDLDIR 146


>gi|170737714|ref|YP_001778974.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819902|gb|ACA94484.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 296

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 14/241 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT A  +L ++Q+++S+Q+  LE  +G  LF R  RGL LT++G  
Sbjct: 11  NALRAFESSARHLNFTRAGLELSVTQAAVSQQVRSLEERLGCTLFTRLPRGLGLTDEGRA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+ + ++ET   +           L +  T  LG   L   LK+F   +P ++++
Sbjct: 71  LLPVLSDAFSRIETVLKQFDGGRFHEVLTLGVVGTFALGW--LMPRLKQFGDTHPFVELR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N  +D++ +  D AIR       ++  +R L+   + A   P   +   +P    +
Sbjct: 129 LRTNNNVVDLAAEGLDFAIRFGVGNWPATRNER-LLDAPLTALCTPDIARRLAQP---AD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L+       +      WL   D    EP  ++    +S   +++  + G+GIAL 
Sbjct: 185 LANETLL-------RSYRTDEWLGWFDAAQLEPWAVNGPVFDSSRLMVEAAMQGAGIALA 237

Query: 245 P 245
           P
Sbjct: 238 P 238


>gi|119776491|ref|YP_929231.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119768991|gb|ABM01562.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 296

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 129/295 (43%), Gaps = 28/295 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF   AR   F+ AAE+L L+QS++S Q+ GLE  +G  LF R  R L LT +G +L 
Sbjct: 10  LQVFEAAARHLHFSRAAEELCLTQSAVSHQVRGLEQHLGQTLFARRGRELALTPKGEQLF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L++   +L E+    S +LR+A         L   L +F   +P I+I L 
Sbjct: 70  LAVQSALDGLDSLCRQLNEAE---SRELRLAVYSSFAVKWLIPRLGDFRRQHPGIKIHLE 126

Query: 128 LDNKDIDISMDYAD---CAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + + D  +S   AD   C  + ++    + L   +L+ +      +P       E L + 
Sbjct: 127 MVSGDPPLSDQVADMFICGEQHQRGFWQTLLRPERLIPV-----CSPALANALGEALVMP 181

Query: 185 -ELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY---LSIMQYCVLG 238
             LD   L++    D+ P       W  +  + + +      Q+ SY   L  ++  + G
Sbjct: 182 LRLDSLPLLSVDEADIGPDWA---RWAKSQAQTLTQA-----QLQSYSHVLLAIEAAIAG 233

Query: 239 SGIALLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIAL  D+IV+ +    ++M      +   F  +FC  E       + AF  +I
Sbjct: 234 QGIALASDFIVEGDIAAGKLMALPWPALETGFGFHFCCRERRLKEPAMAAFAEWI 288


>gi|22127384|ref|NP_670807.1| LysR-family regulatory protein [Yersinia pestis KIM 10]
 gi|45442747|ref|NP_994286.1| LysR family regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108809113|ref|YP_653029.1| LysR family regulatory protein [Yersinia pestis Antiqua]
 gi|108810692|ref|YP_646459.1| LysR family regulatory protein [Yersinia pestis Nepal516]
 gi|145597761|ref|YP_001161837.1| LysR family regulatory protein [Yersinia pestis Pestoides F]
 gi|150260299|ref|ZP_01917027.1| LysR-family regulatory protein [Yersinia pestis CA88-4125]
 gi|162419634|ref|YP_001604895.1| LysR family substrate-binding transcriptional regulator [Yersinia
           pestis Angola]
 gi|165924994|ref|ZP_02220826.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165939867|ref|ZP_02228406.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166008711|ref|ZP_02229609.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212109|ref|ZP_02238144.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167399656|ref|ZP_02305180.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167418985|ref|ZP_02310738.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167425213|ref|ZP_02316966.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167469333|ref|ZP_02334037.1| substrate-binding transcriptional regulator, LysR family protein
           [Yersinia pestis FV-1]
 gi|218927862|ref|YP_002345737.1| LysR family regulatory protein [Yersinia pestis CO92]
 gi|229837351|ref|ZP_04457514.1| LysR-family regulatory protein [Yersinia pestis Pestoides A]
 gi|229840563|ref|ZP_04460722.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842889|ref|ZP_04463041.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900890|ref|ZP_04516014.1| LysR-family regulatory protein [Yersinia pestis Nepal516]
 gi|270487738|ref|ZP_06204812.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294502736|ref|YP_003566798.1| LysR-family regulatory protein [Yersinia pestis Z176003]
 gi|21960471|gb|AAM87058.1|AE013954_2 putative transcriptional regulator LYSR-type [Yersinia pestis KIM
           10]
 gi|45437613|gb|AAS63163.1| LysR-family regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108774340|gb|ABG16859.1| LysR-family regulatory protein [Yersinia pestis Nepal516]
 gi|108781026|gb|ABG15084.1| LysR-family regulatory protein [Yersinia pestis Antiqua]
 gi|115346473|emb|CAL19346.1| LysR-family regulatory protein [Yersinia pestis CO92]
 gi|145209457|gb|ABP38864.1| LysR-family regulatory protein [Yersinia pestis Pestoides F]
 gi|149289707|gb|EDM39784.1| LysR-family regulatory protein [Yersinia pestis CA88-4125]
 gi|162352449|gb|ABX86397.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis Angola]
 gi|165912178|gb|EDR30816.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165923194|gb|EDR40345.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165992050|gb|EDR44351.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166206855|gb|EDR51335.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166962979|gb|EDR59000.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167052160|gb|EDR63568.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167055976|gb|EDR65757.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229682229|gb|EEO78321.1| LysR-family regulatory protein [Yersinia pestis Nepal516]
 gi|229690156|gb|EEO82213.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696929|gb|EEO86976.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705474|gb|EEO91484.1| LysR-family regulatory protein [Yersinia pestis Pestoides A]
 gi|262360768|gb|ACY57489.1| LysR-family regulatory protein [Yersinia pestis D106004]
 gi|262364713|gb|ACY61270.1| LysR-family regulatory protein [Yersinia pestis D182038]
 gi|270336242|gb|EFA47019.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294353195|gb|ADE63536.1| LysR-family regulatory protein [Yersinia pestis Z176003]
 gi|320016768|gb|ADW00340.1| LysR-family regulatory protein [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 303

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 132/279 (47%), Gaps = 14/279 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGALFLSHARQIIGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P+YL+    P
Sbjct: 121 QITLELNTDDLNIDLLEQRTDIAIRI-GALRDSTIHARLLGASRVRLLASPNYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
             I+ L  H+L+ F        E  N  +    P G    I  L  +S  ++    + G 
Sbjct: 180 HIIEALADHSLLGFTQ-----PEFLNQWSLPHLPGGRSSIIPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVI----TPSFTVYF 271
           GIA L D++ +++     LV ++ D I     P   VY+
Sbjct: 235 GIAELSDFMTREDQLAGRLVEVLADQILETWQPINAVYY 273


>gi|307295165|ref|ZP_07575004.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878668|gb|EFN09887.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 294

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 9/193 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+LR+F  V R G+   AA ++ +  S+++R+++ +ET +G +LF R  RG+T T     
Sbjct: 5   DELRLFLAVMREGNMLAAARRVGVDHSTVARRLTNMETTLGARLFDRSPRGVTPTPAAFA 64

Query: 66  L----HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           L     R+ SE+   + +     +E      G +R+AT      +L+   +      +P 
Sbjct: 65  LVPHAERIESELLAAMSSVAGRDREV----EGTVRLATPEAFASHLIAPRVAALRERHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L  ++K   +S   A+ A+ L KP      + RKL    +  YA+  YL+    P 
Sbjct: 121 LTLELASESKAASLSRREAEIAVML-KPPPKGRFVTRKLADYRLGLYASKDYLERAGTPG 179

Query: 182 SIQELDKHNLITF 194
              +L +H  +++
Sbjct: 180 GRADLSRHVFVSY 192


>gi|239834322|ref|ZP_04682650.1| HTH-type transcriptional activator ampR [Ochrobactrum intermedium
           LMG 3301]
 gi|239822385|gb|EEQ93954.1| HTH-type transcriptional activator ampR [Ochrobactrum intermedium
           LMG 3301]
          Length = 303

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 21/292 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF   AR  SFT AA +L ++Q+++S QI  LE  VG  LF R  R + LTE G +L 
Sbjct: 19  IRVFESAARHASFTRAAAELGMTQAAVSYQIKILEERVGAPLFLRMPRQVELTELGKQLA 78

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +E +  +      L+E +    G L I+       N L   L  F + +P + ++L 
Sbjct: 79  PAITEAFETMRNAFASLREDA---EGTLSISVLATFAANWLAHRLGSFQMRHPSLAVRLD 135

Query: 128 LDNKDIDISMDYADCAIRL---RKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             +  ID +    D AIR    + P +++  LI+     +   A AA   +   +EP  +
Sbjct: 136 TSDSLIDFATTNVDIAIRSGFGKWPGLEAHQLIKASFTPMLSPALAA--TIGGVKEPADL 193

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIA 242
             L    +I   D   K   +   +     P   + R+    +       +    G G+ 
Sbjct: 194 LRL---KIIDASDPWWKIWFEAAGIENPQLPGNTQNRLGAQHIEG-----RAAAAGQGVG 245

Query: 243 LL-PDY--IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +L P +  +      L++  + +       +  YP++ + T K++AFR +I 
Sbjct: 246 ILTPAFHQMEIATGQLIQPFDILGDDGRAYWLVYPKSRRTTPKIRAFREWIL 297


>gi|73539717|ref|YP_294237.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72117130|gb|AAZ59393.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 322

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 1/189 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +++ L  F  VAR+G F  AA    +S SS+S  +  LE+++G++L  R  R +  TE
Sbjct: 22  GMEFNDLAAFVSVARAGGFRDAARISGVSASSLSIAVRRLESKLGLRLLNRTTRSVAPTE 81

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    + ++ ++E+    L     KPSG L++         +L   L  FL  YPD
Sbjct: 82  AGLRLLERLTPLFSEMESALDVLNAFRDKPSGTLKLNVPSSAAWTVLPAILPPFLEAYPD 141

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA-PHYLKNCREP 180
           I++++++++  +D+     D  IR  + ++   +       +   A AA P YL     P
Sbjct: 142 IRVEVVVEDGFVDVLAIGCDAGIRYEERLEQDMIAIPIGPRVQCFATAATPGYLDKHGRP 201

Query: 181 LSIQELDKH 189
              ++L  H
Sbjct: 202 AHPRDLLSH 210


>gi|54024837|ref|YP_119079.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54016345|dbj|BAD57715.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 305

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 127/283 (44%), Gaps = 26/283 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L V   VAR+G FT+A ++L L+ +++SR+I+ LE  +G ++  R A G  LT+ G  
Sbjct: 9   DDLLVLLAVARTGRFTYAGDELGLNHTTVSRRITALEDALGGRVLSRGAGGWELTDLG-- 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPS--------GKLRIATTIDLGQNLLQGNLKEFLL 117
                 E     E   IE    S+ P+        G +R++ T      L    + E   
Sbjct: 67  -----REALGAAEA--IEAAVRSIAPNSRGERTLEGVVRMSATDGFSAYLAAPAVAEVRH 119

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            +P I++++I   +         D  + + +P ++ +         I +  Y  P Y   
Sbjct: 120 RHPRIEVEIIATTRRASEQRSGLDLEVVVGEPRVRRARATPLGDYVIGL--YGTPAYFAE 177

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P S+ +L  H L+ F + + + ++D +    V   +   R S    N ++ + +   
Sbjct: 178 HGTPESVADLAGHPLVYFIESMLQ-VDDLDLAPNV---VPAMRESVSSTNVFVHV-EATR 232

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALK 278
            G+G+ LLP ++   +P+LVR++ D +    T +    PE L+
Sbjct: 233 AGAGLGLLPCFMADRHPDLVRVLPDAVAIRLTYWLVARPETLR 275


>gi|84685719|ref|ZP_01013616.1| putative transcription regulator protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666385|gb|EAQ12858.1| putative transcription regulator protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 334

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 129/292 (44%), Gaps = 23/292 (7%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   AR GSF +AA +L+++Q SIS Q+  LE  +G +LF R  R + LTE+G  L R 
Sbjct: 37  AFEAAARLGSFGNAATELNVTQPSISYQVKNLEKHIGTQLFERRGRAVALTEEGKILFRA 96

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
               + +++    ++ + + +    L ++++     + L           PD+ + L + 
Sbjct: 97  VERGFAEIQVGLAQIAQRANEHLVTLCVSSSA--AAHFLLPRHPVLSAALPDVDLSLKIM 154

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++DI+ + + AD AIRL        L   +L         AP + +     +S+ EL   
Sbjct: 155 SRDINPAAENADFAIRLGHG-DWEDLTAWRLFDEVYFPLCAPDFFEGRTSGVSLDELKGR 213

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIAL--- 243
           NL+   +   +  +D+    T     G P ++    +  +   +++Q  V G GI L   
Sbjct: 214 NLLFLRERF-RSRDDWK---TFFAEAGAPALNVHARMTFSDQQTLLQAAVAGQGIGLGWM 269

Query: 244 -LPDYIVKD----NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + D  + D    NP  ++I  D        Y   P++   T   + FR++I
Sbjct: 270 GMTDGFLNDGSLINPTGIQIRTDR-----AFYLVTPKSTTLTATAERFRDWI 316


>gi|116052201|ref|YP_788955.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587422|gb|ABJ13437.1| possible LysR family transcription regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 303

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 126/290 (43%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++GS + AA +L +   ++SR++  LE ++ ++L  R  RG  LTE 
Sbjct: 1   MDLNALRMFVGVVQAGSLSAAAARLEIPLPTLSRRVRELEHQLAVQLLERSVRGTRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+   +     L   +  L     +  G+LR+  ++  G       L  F   YPDI
Sbjct: 61  GMRLYENAARGVEILHEAEQALASDQARLKGRLRL--SLPPGFEPWWELLGVFQRRYPDI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q+    + ID+  D  D A+R+   +   +++ R+L         +P  L+  RE   
Sbjct: 119 RVQVFTSERRIDLVEDGVDVALRV-GAVAHEAMVARRLFAYRHVLVGSPRLLE--REG-G 174

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ LD       G   P    +  WL  +     +PRI  L  N Y  +    +    + 
Sbjct: 175 METLDDLRRFPVGMWYPGGSGEGAWL--LGGQAVKPRI-VLATNDYAHLRARALDAELVT 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LP ++         L+ ++ +   P   ++  YP     +  ++ + +F
Sbjct: 232 ELPPFMAAAAVRAGQLIELLPEHPLPEQEIHLLYPSHRHPSTIVRCYLDF 281


>gi|254362162|ref|ZP_04978278.1| LysR family transcriptional regulator [Mannheimia haemolytica
           PHL213]
 gi|153093731|gb|EDN74674.1| LysR family transcriptional regulator [Mannheimia haemolytica
           PHL213]
          Length = 236

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 3/181 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F  V + GS + A+E+L++  ++ISRQI+ LE E+ I+LF R   G+  T  G +
Sbjct: 4   NTLRLFVAVIQHGSLSKASERLNVPIATISRQIADLEKELNIQLFDRQKSGVKPTMAGQR 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+        +L T +  L E      GKLR++ +      L    + +F   YP +Q+ 
Sbjct: 64  LYEQVHLSIEQLATAKEVLFEEQGNLKGKLRLSASPACEPVLAW--IADFQAAYPQVQVH 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ +D+S D  D A R+ + +     I +K+  I     A P +L     P ++++
Sbjct: 122 CTLTDRLLDLSADGIDVAFRIGQ-LHGEQFIAKKVGQIGSKWVAHPKFLARFGTPSTVKD 180

Query: 186 L 186
           L
Sbjct: 181 L 181


>gi|86355948|ref|YP_467840.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280050|gb|ABC89113.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 298

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 137/312 (43%), Gaps = 42/312 (13%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + VF  VA + +F  A E+L +++S++S+ +  LE  +G  L  R  R ++LT
Sbjct: 1   MADDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRLGAPLVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGN-LKEFLLLY 119
           E G            ++      +++   +PSG LRI T   + +  L G  L  FL   
Sbjct: 61  EAGEVFLEAVRPSMRQVRDAMQTVRDMQARPSGLLRI-TVSSIAERFLSGTLLTGFLQAC 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA------YAAPHY 173
           P I++ + + + + DI     D  +RL        +I++ ++ + + A       A+P Y
Sbjct: 120 PGIKLDITITDDEFDIVEAGFDAGVRL------GEVIEQDMIAVPVSAPQRQCSAASPGY 173

Query: 174 LKNCREPLSIQELDKHNLITF---GDLIPKCME------DFNWLATVDRPIGEPRISCLQ 224
           L+    P   ++L  H  I +    D  P   E      DF+    VD     P I+   
Sbjct: 174 LQRHAPPRHPRDLQNHACIGWRPRPDTAPYRWEFRENGRDFD--VAVD-----PMIT--- 223

Query: 225 VNSYLSIMQYCVLGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFT-VYFCYPEALK 278
            N    +++    G+GI          Y+  D   LV ++E+   PSF   Y  YP+  +
Sbjct: 224 TNDMGMMIRMACAGAGITFGMVETFEPYV--DRGELVPLLEE-FCPSFPGFYLYYPKRQR 280

Query: 279 NTGKLKAFRNFI 290
              KL+A  +++
Sbjct: 281 QPLKLRALVDYV 292


>gi|116050667|ref|YP_790513.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585888|gb|ABJ11903.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 309

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 1/192 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +
Sbjct: 10  DEVATLLALAEHGSFAAADRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++
Sbjct: 70  LASRFRQAVDLLDEAEHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                + +DI  +  D AIR+ + +  S L+ R+L        AAP YL+    P    +
Sbjct: 130 TDYSERFVDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLERHGVPRIPAD 188

Query: 186 LDKHNLITFGDL 197
           L  HN + F  L
Sbjct: 189 LAAHNCLGFSGL 200


>gi|209966216|ref|YP_002299131.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
 gi|209959682|gb|ACJ00319.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
          Length = 302

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 17/292 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L     +AR GSF  AA  L +S +++S  I  LE  +G++LF R  R ++L++ G
Sbjct: 5   DLNDLDAVIAIARRGSFRAAALDLGMSTTALSNAIGKLEASLGVRLFNRTTRSVSLSDAG 64

Query: 64  ----SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
               +++     +++  LE     ++     PSG LRI       + +L   + EFL  +
Sbjct: 65  RLFVAQIGPAVQDIHGALEA----VRSQQTVPSGTLRINAFATAAREILSPLVLEFLRRH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCR 178
           P + + L+ + + +DI  +  D  +R+   +  S +I   L     HA   +P Y +   
Sbjct: 121 PQVHVDLVTEGRLVDIVAEGFDLGVRVAD-LVPSDMIAISLGRPQRHAVVGSPAYFQRHD 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL- 237
            P    +L  H  I     +P     + W    D    +  ++         + +  VL 
Sbjct: 180 TPRVPPDLLHHPCIRV--RLPNGAL-YRWQFEKDGQTAQIDVAGPITLDEAGLARIAVLD 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G G+    +  V+   D   LVR+++D   P   +   YP     +  L+AF
Sbjct: 237 GIGLGFFMEQDVRTDIDAGRLVRVLDDWTPPRAGLCLYYPGRRNPSAALRAF 288


>gi|28869687|ref|NP_792306.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852929|gb|AAO56001.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 302

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  +A   SFT  A  + LS ++++R ++ LE+ +GI L  R  R + LT+ G + 
Sbjct: 6   EMTLFAALAGQTSFTGVARHVGLSTATVTRAVASLESRLGILLVVRTTRNMRLTKAGQRF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L   +         P+G L +      G   +   L  FL  YP + I+ 
Sbjct: 66  AEDCRRLLADLSEAENAAAGVHALPAGTLTVTAPQMFGALHVTPVLTRFLSEYPAVDIRA 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL ++ + +  +  D A+R+   ++ SSL   ++ ++     A+P YL     P    +L
Sbjct: 126 ILVDRVVSMLDEGVDVAVRI-GALRDSSLTAIRVGSVRRMVCASPVYLTQHGTPRHPDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H  I+     P+     +W   VD       ++  L + S+ + +   +   G+  +P
Sbjct: 185 QQHATISTS--APE--RPPHWAFRVDDQDYSVNVASRLSLTSFQASINAALQHWGLTQVP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            Y +++   N  LV ++ED       V+  Y E  + + ++++F +F     R+
Sbjct: 241 HYQIREHLHNGRLVCVLEDFEIAPEPVHVVYSEGRRGSSRVRSFVDFCVSALRE 294


>gi|323493367|ref|ZP_08098489.1| transcriptional regulator, LysR family protein [Vibrio brasiliensis
           LMG 20546]
 gi|323312190|gb|EGA65332.1| transcriptional regulator, LysR family protein [Vibrio brasiliensis
           LMG 20546]
          Length = 293

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 79/141 (56%), Gaps = 4/141 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  VA SG  T AA+ L+++Q +ISRQIS LE E+G++LF R +R LTLT  G   
Sbjct: 5   QIKYFLAVANSGGVTKAADILNITQPAISRQISDLEEELGVQLFDRVSRKLTLTVAGEYF 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATT-IDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +V   +E     ++  S   +G LR+ +    L + L+  +L +F    PD+ I+
Sbjct: 65  REQMDKVTSDIEKASQTVKRVSTGATGNLRLGSVETVLWEGLVPNHLSQFRAQNPDVTIE 124

Query: 126 LILDNKDIDIS-MDYA--DCA 143
           ++ DN    ++ M++   DCA
Sbjct: 125 MVTDNTTALLNHMEHGRLDCA 145


>gi|160897330|ref|YP_001562912.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362914|gb|ABX34527.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 295

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF VVAR+ + T AA +LH+SQS++S+Q++ L+T +G++LF R   G++LT  G +
Sbjct: 9   NPLKVFEVVARTRNLTQAARELHISQSAVSKQLNVLQTYLGVELFRRERHGISLTLAGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                +  +  +     E+  S       LR+ T        L   L++F   + DI + 
Sbjct: 69  YGEAVAPAFEGIGRATDEIMRSG--SDNTLRLQTYTTFAAKWLIPRLQDFNARHGDIAVV 126

Query: 126 LILDNKDIDISMDYADCAIRL 146
           +    KD+D   D+ D AI++
Sbjct: 127 ITNSVKDVDFDRDHVDLAIQM 147


>gi|54303554|ref|YP_133547.1| hypothetical protein PBPRB1899 [Photobacterium profundum SS9]
 gi|46916984|emb|CAG23747.1| hypothetical protein PBPRB1899 [Photobacterium profundum SS9]
          Length = 300

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 115/259 (44%), Gaps = 12/259 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V   GSFT AA+   + +S++SR+I  LE  +  +L  R  R L LTE G  
Sbjct: 4   DDMELFVKVVEQGSFTKAADYCEIPKSTVSRRIRDLEQSLKTRLLERTTRRLHLTEVGEA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++  ++ETT+ E+ +     SGKL +    D    L   ++ +F   YPDI + 
Sbjct: 64  FYHKAQQILKEVETTEKEIAQKQGDYSGKLTVYAP-DCILELCVDHVAQFCQDYPDISLN 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L  D++   + M      + L    QS SS I R L T+    +A+P YL    EP +  
Sbjct: 123 LHSDSQPQHL-MAEKRFDLLLNIGTQSDSSFIARPLATLSYDYFASPDYLAIDGEPKTPA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L + + +T      K ME   W          P      V+S   +    V   GI  L
Sbjct: 182 DLHQFSTLTLNQNNQKAME---WYFNQQEL---PLTHKCTVDSPYVLRALAVANQGICCL 235

Query: 245 PDYIVKDN---PNLVRIME 260
           P  +V +      LVR+ +
Sbjct: 236 PTIMVSNEIQANKLVRLFD 254


>gi|307729428|ref|YP_003906652.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583963|gb|ADN57361.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 314

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 129/290 (44%), Gaps = 9/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +GS T AA    LS + +   +  LET +G +L +R  R   L+  G   +
Sbjct: 7   MTVFVRVVETGSLTAAAVACDLSPTMVGNHLQALETRLGTRLIHRTTRKQQLSAFGRTYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++ ++    +    P G+LR+   +      L   + ++   YP++++ ++
Sbjct: 67  ERCVDILGLIDESERLALDHLATPRGRLRVTAPVVFSNECLIPAIGDYCERYPEVKLDIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+  D  + AIR+   + +  L+ R+L    +   A+  YLK    P + + L 
Sbjct: 127 ATDALSDLVDDGFEAAIRI-GALGNPDLVARQLTPYRLVLCASRAYLKAHGTPSTPKALS 185

Query: 188 KHNLITFGDLIPKC---MEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H  +T+    P+         W L   D  +  P    L++++  ++ +  + G GIA+
Sbjct: 186 THQCLTYA-YPPRSEWHTAQPEWVLHGPDGRVSVPVNGRLKIDNAEALRRAALRGLGIAM 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP  +V D+     L  ++   + P   +   Y    + + KL++F +F+
Sbjct: 245 LPAILVDDDLRAQRLTEVLPGYVAPERQLSLLYLRERQLSSKLRSFIDFV 294


>gi|229589307|ref|YP_002871426.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361173|emb|CAY48037.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 297

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 91/187 (48%), Gaps = 1/187 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF+ AA++L + Q ++S+ I+ LET + ++L  R  RGLT TE G    
Sbjct: 7   METFVHVIETGSFSAAAKRLGIGQPAVSKSIAQLETRLAVRLVLRSTRGLTPTEAGLVFF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +        + +    +G LRI+  +   +  +  +L  FL  +P++ + ++
Sbjct: 67  EKAKRAIDEANAADDAARGAGAGLTGTLRISAPVTFARMHIIPHLGPFLTQFPELNVDVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +++  +  D A+R+   +  SSL  RK+          P Y +   EP +  ++ 
Sbjct: 127 LDDRSLNLIEEGIDVALRMGN-LNDSSLTARKIGESPCVILGTPAYFERFGEPATPADVL 185

Query: 188 KHNLITF 194
           +H  I +
Sbjct: 186 QHQAIIY 192


>gi|218514179|ref|ZP_03511019.1| transcriptional regulator, LysR family protein [Rhizobium etli
           8C-3]
          Length = 138

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 74/132 (56%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA   SF  AA+ L +S  ++SR +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEGLAMFAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +Y + E  +   +E + +P G +R+A  +D G   L   L +F  L+P+I 
Sbjct: 66  LRLVDSAARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEIS 125

Query: 124 IQLILDNKDIDI 135
           I L + +  +DI
Sbjct: 126 IDLHMSDAVVDI 137


>gi|167625978|ref|YP_001676272.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167356000|gb|ABZ78613.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 289

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 28/297 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF   AR   F+ AA +L ++QS++S Q+  LE   G +LF R  R L LT +G  L+
Sbjct: 10  LQVFEAAARQSHFSRAAAELCITQSAVSHQVKQLEEHYGERLFKREGRQLRLTSKGELLY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    ++++L    +++   S   + +LR+A         L   L +F   +P I+I+L 
Sbjct: 70  RELERIFNELSDLSMQISGDS---NDQLRLAVYSSFAIKWLIPRLSDFRRQHPQIKIRLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA----PHYLKNCREP--L 181
           +   D ++S + AD  I      QS  L        H H        P    N  +P  L
Sbjct: 127 MITDDPELSDNVADMFI----TGQSGQL------GYHHHLLHKERLIPVISPNLLDPDSL 176

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL KH L+T  D  P  ++   W    +  +   +   +  +  L+I +  + G GI
Sbjct: 177 ALDELAKHPLLTV-DEGPLGLDWDRWFVANNLVLPADQQQHIFSHVLLAI-EAAIAGQGI 234

Query: 242 ALLPDYIVKDNPNLVRIME----DVITPSFTVYF-CYPEALKNTGKLKAFRNFIFLK 293
           AL  D++V+ +     ++E    D++T  F  YF C    LK+   + AF +++ L+
Sbjct: 235 ALASDFMVQADIEKGLLVELDLPDILT-GFEFYFSCKQRRLKDPA-IAAFVSWLSLQ 289


>gi|167623149|ref|YP_001673443.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167353171|gb|ABZ75784.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 300

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 132/295 (44%), Gaps = 26/295 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +  +GSF+ AA++L +  +++SR+++ LET +  +L  R+ R L LTE+G  L +  
Sbjct: 15  FVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRKLRLTEEGIALFQQY 74

Query: 71  SEVYHKLETTQIELQESSV---KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  + ++       S V   KP G LRIA  + +   +    L EF   YPDIQ+ + 
Sbjct: 75  QSIISQFDSI------SGVTVDKPEGTLRIAAPVSIISMIFIKALNEFCEQYPDIQLHIT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +N  ID+  +  D AI +      SS I   L  ++   +A+  Y+ +       QEL 
Sbjct: 129 QNNNVIDLIDEGVDVAI-VGGTQPDSSWISSSLGVLNYGLFASQQYIDSAPVLTHPQELA 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H LI       K    +NW  ++  P G        + L ++     ++  V   GI  
Sbjct: 188 EHALI-------KVWPLYNW--SLKHPNGGSFYYDGKAKLTLSDLHGAVEATVDHGGILY 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            P+  VK+      L R++ + I     +   Y +      K+K F  F+  KA 
Sbjct: 239 GPELFVKEELRAGKLQRLLPEWIGEKRRISILYHQRSHQPLKVKLFIEFMQSKAE 293


>gi|166713334|ref|ZP_02244541.1| transcriptional regulator lysR family protein [Xanthomonas oryzae
           pv. oryzicola BLS256]
          Length = 302

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 11/199 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  VA SGSF+ A E +HL+Q ++S++I+ LE ++  +LF R  R + LT
Sbjct: 1   MAMDLASLNAFVAVAASGSFSAAGEAMHLTQPAVSKRIALLEAQLSARLFDRLGRQVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      +  +L+ T+  L+       G+L +AT+  +G + L   L+ F   +P
Sbjct: 61  EAGQALLPRAQRILAELQDTRRVLEHLGAAVGGRLSLATSHHVGLHRLPALLRSFATQHP 120

Query: 121 DIQIQLILDNKDIDISMDYA-------DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
               Q  LD + +D  + YA       + A+    P   + L  + +    +H   AP +
Sbjct: 121 ----QAALDIQFLDSELAYAAVLRGEVELAVTTLAPETHAPLRAQPIWHDRLHCVVAPDH 176

Query: 174 LKNCREPLSIQELDKHNLI 192
               R  +S+ ++  H  +
Sbjct: 177 PLAARPAVSLDDVVAHPAV 195


>gi|152989252|ref|YP_001349767.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964410|gb|ABR86435.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 309

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 131/295 (44%), Gaps = 14/295 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  VA  G F+ A   L +++S +S ++  LE  +G+ LF R  R + LTE G
Sbjct: 9   DLNDLYYFAAVAEHGGFSAAGRVLGVAKSKLSLRVLQLEQRLGVLLFQRTTRKIQLTEVG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++       +  +    Q  +  SS  P+G +RI+      +  L   L +F+  YP +Q
Sbjct: 69  ARFLEHCRSLVAEAHAAQDAIDFSSSGPTGLIRISCPAGAAEIYLTPWLSQFMAQYPRVQ 128

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           IQL   ++ +D+  +  D A+RLR +   +  L+ R+  T      A+P YL+      S
Sbjct: 129 IQLQASDRVMDLVAEGIDVALRLRPESSMAPELVTRRYGTSRRILVASPAYLERHPAIQS 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI----MQYCVLG 238
             +L   + I+  +  P  ++ +  +     P  E R   L+     S+    MQ    G
Sbjct: 189 PDDLKHADTISLLEEAP--LQQWELIG----PESEVRTIELRPRLMASVWSLAMQATRDG 242

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+ALL     +   +  +L +++ +       V+  +P        ++A  +F+
Sbjct: 243 QGVALLSALGCRSALECGDLRQVLPEWAARELVVHAVFPTRRGMVPAVRALLDFL 297


>gi|152970311|ref|YP_001335420.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330008448|ref|ZP_08306258.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150955160|gb|ABR77190.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328535114|gb|EGF61625.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 298

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 44/292 (15%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +++F  +  +GSF  AAE L + + ++++ +  LE E G++L  R  R L LT +G 
Sbjct: 6   FENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLTPEGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSV--KP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           + +R +  +  + +    +L ES    +P  G+LR+   I   + L+  +L +F   +P+
Sbjct: 66  EFYRRSKPLLSQAD----DLLESFAPDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHPE 121

Query: 122 IQIQLILDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++I  +L + D+  D+  D  DC +R+   ++    + R L  + +   A+P YL     
Sbjct: 122 VEI--VLSSSDVRRDMLRDGLDCLLRVGD-LEDGDYVARSLGEVALTTCASPGYLARYGA 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-- 237
           P ++++L  H  +             NW+ +  R I   R    +    ++I    VL  
Sbjct: 179 PATLEDLQSHLAV-------------NWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDN 225

Query: 238 -----GSGIA----------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
                 +G+A           L  YI  D+  LV ++ D   P   +   YP
Sbjct: 226 SEVFTAAGLAGLGMLQGMRFFLQPYI--DSGQLVEVLPDFPAPRRPLSLLYP 275


>gi|86146046|ref|ZP_01064373.1| putative transcriptional regulator protein [Vibrio sp. MED222]
 gi|85836251|gb|EAQ54382.1| putative transcriptional regulator protein [Vibrio sp. MED222]
          Length = 292

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 138/285 (48%), Gaps = 15/285 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F  V   GSFT AA  L L ++++SR+I+ LE  +GI+LF+R  R L+LT+ G  
Sbjct: 4   EDLKLFTTVVELGSFTAAANALDLPRANVSRRINDLEKSLGIQLFFRTTRSLSLTKSGEL 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++        L+         S    G+++I    +   +++Q  L +F  +YP +++ 
Sbjct: 64  YYKELLNALSALDKANHVASNLSEVAHGQIKIGLLPET-SDIMQSTLFKFQDMYPKVELD 122

Query: 126 LI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  + N  +D+     D A+     +  ++++ RK++ +     A+P +++   +P S++
Sbjct: 123 IRNISNGFVDMYRQGLDLAMH-GGTLSDANVVARKVMVLQRIFVASPEFIEKQGKPSSLR 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-GSGIAL 243
           +L  +  + F    P    D  W         EP +    V+  +  ++  V+   GIAL
Sbjct: 182 DLTNYPFVCFR--WPSGDIDKEWDIKDHTIKVEPSV----VSDSIGFVKGGVIRHRGIAL 235

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE--ALKNTGKL 283
           LP+ +V+    + +L+ +  D        +  YP+  AL ++ +L
Sbjct: 236 LPELLVRHQLKDGSLINLFPDDNLQKEEAWLLYPQRKALSHSAQL 280


>gi|330504086|ref|YP_004380955.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918372|gb|AEB59203.1| transcriptional regulator, LysR family [Pseudomonas mendocina
           NK-01]
          Length = 328

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 110/234 (47%), Gaps = 10/234 (4%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V  +GSF  AA++  +++S++SR+I  LE  + ++L  R  R L LT  GS+++R   ++
Sbjct: 34  VVEAGSFAAAAQRTGIAKSNLSRRIIQLERRMDVQLLIRKPRALHLTPTGSRIYRHALDM 93

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
            H  E  +    +++  P G L +     L Q  L G L  F   YPD+++ L   +  I
Sbjct: 94  LHAAEAVEDIAMQANGLPRGPLHLCAPGILSQ-WLYGCLHTFRERYPDVELCLSEADDMI 152

Query: 134 DISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           D++ +  D ++ L + P  S  L+ R L  + M     P  +     P  +  LD  +L+
Sbjct: 153 DLTGNQLDLSLSLHEAPFDSPDLVSRPLAALEMVIVGTPEVVDGLGRPRRLSALDDRHLL 212

Query: 193 TFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           T         E   W LA   + +G+  +S    +S L   +    G G+A +P
Sbjct: 213 T----TRSATEMRPWLLANGKKILGKAALSARDQHSLLDAARS---GLGLACVP 259


>gi|209886586|ref|YP_002290443.1| transcriptional regulator of LysR family [Oligotropha
           carboxidovorans OM5]
 gi|209874782|gb|ACI94578.1| transcriptional regulator of LysR family [Oligotropha
           carboxidovorans OM5]
          Length = 308

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 10/147 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +LR    +A SGS + AAE L  SQ S+S+QI  LE E+G++LF+RHARG+ LTE 
Sbjct: 1   MDLRQLRSLVYIADSGSLSRAAEILRTSQPSLSQQIKDLEAELGMELFHRHARGVFLTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   +   +  +   S  PSGK+ +       + L    +++  + YP+I
Sbjct: 61  GHTLYAHARSILKDVAFAKETVVNQSRNPSGKVLVGFPTSACRGLSAALIEKVKVNYPNI 120

Query: 123 QIQLI----------LDNKDIDISMDY 139
            I LI          + N  +DI++ Y
Sbjct: 121 SIHLIEAMTGTLDEWMQNARLDIAVLY 147


>gi|170697363|ref|ZP_02888455.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137694|gb|EDT05930.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 308

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 1/187 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R++  V   GS + AA+ L +   ++S +I  LE  +G +L  RHAR  T T +G +
Sbjct: 5   EAMRIYVRVVERGSISMAAQDLGIGGPAVSERIDRLEKHLGCRLLLRHARAFTCTSEGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  +  +    ET   E+        G +RIA +   G+ ++   LK     +P ++I 
Sbjct: 65  FYERSRAILDAAETAVAEVAGDEQIYRGTIRIAASQCFGETIVPDALKRMRASFPQLEID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L++K +D+  +  D + RL   + S + I   L  +     AAP YL      LS  +
Sbjct: 125 LVLNDKVVDLVTEGVDLSFRL-GALGSGAYIAHWLGQVDRLLVAAPTYLDRNSPILSAAD 183

Query: 186 LDKHNLI 192
           L +H  I
Sbjct: 184 LVRHPFI 190


>gi|149187920|ref|ZP_01866216.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148838316|gb|EDL55257.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 304

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 1/173 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V    SF  AA QL++  +++SR+I  LE ++G KL  R  R L+LTE G ++ 
Sbjct: 7   LPLFAKVVELSSFAEAARQLNVPTTTVSRKIQQLEHDLGGKLLNRSTRSLSLTELGIQVL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +     + ++ + +P G L I     L Q+LL     EF  LYP I+I L 
Sbjct: 67  PKAQLIADTVAELYSDAEDMANQPIGTLTITAPKALSQDLLAPMFAEFRALYPTIRINLA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
             N+  D++    D A RL  P+  SSL+   L  +     A+  Y+    EP
Sbjct: 127 SSNRYQDLTKQSIDFAFRL-GPLHDSSLVALTLSPVKYVLAASTQYIDKYGEP 178


>gi|114761107|ref|ZP_01441022.1| transcriptional regulatory protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114545355|gb|EAU48357.1| transcriptional regulatory protein [Roseovarius sp. HTCC2601]
          Length = 297

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 117/284 (41%), Gaps = 6/284 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR F  VAR  +FT AA  + +SQS++S  I  LE  +G++L  R  R +  TE G +
Sbjct: 7   DDLRAFIAVARERNFTRAAAGMGISQSALSHTIRQLEARLGVRLLTRTTRAVAPTEAGQR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +  +  ++     L +    P+G +RI ++     ++L   L  FL  +PDI+++
Sbjct: 67  LLEGITPHFAGIDAELDALGDLRDTPAGTVRIVSSEYGVSHILWPRLAPFLKAHPDIRVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  DN   DI  +  D  +R  + +    +  R    +       P    +   P   +E
Sbjct: 127 ITQDNGLNDIVSEGYDAGVRRGEHLARDMISARIGPDLRYIVVGTPDLFDSRPRPRHPRE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L     + F   +      F W     D  +       L  N+    ++    G G+  +
Sbjct: 187 LAALPCVNF--QLQSTGGFFAWEFKERDHELRVKVEGQLAFNNIFDCLRAAEAGFGLTYV 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           P+ I +       LV+++ED        +  YP   + +   +A
Sbjct: 245 PEEIARPGLAEGRLVQVLEDFCPVWDGFHLYYPNRRQASAAFRA 288


>gi|291550693|emb|CBL26955.1| Transcriptional regulator [Ruminococcus torques L2-14]
          Length = 288

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 111/258 (43%), Gaps = 27/258 (10%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           K   F      GSFT +AEQL  SQS ISR I+ LE E  + L  R   G+ LT  G KL
Sbjct: 7   KYMAFVKTVECGSFTKSAEQLSYSQSGISRMINDLEKEWKVVLLERSKSGVKLTSSGMKL 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 V  + E  Q+E+ E     SG +RI T   +  + L   +KEF   YP+I  ++
Sbjct: 67  LPYAERVCREYEKLQLEVDELQGLKSGLIRIGTFSSVATHWLPNIIKEFQKNYPNIDYEM 126

Query: 127 IL-DNKDID--ISMDYADCA---IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---- 176
           +L D  DI+  I     DC    + +R  + +  L Q +L+ +    +      K     
Sbjct: 127 LLGDYTDIEEWIIEGRIDCGFTRLPVRDEMDTIFLEQDRLLVVLPEGHPLTELQKIPVSA 186

Query: 177 -CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
            C EP  + E      ++                  +R   +P++     + Y +IM   
Sbjct: 187 LCEEPFMLLEKGAKAEVS---------------EIFERSNLKPKVHFTTWDDY-AIMAMV 230

Query: 236 VLGSGIALLPDYIVKDNP 253
             G GI++LP+ I+K  P
Sbjct: 231 ESGLGISVLPELILKRIP 248


>gi|227113789|ref|ZP_03827445.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 294

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            R F   A++GSF  AAE LH++  ++SRQI  LE  +G++LF R  R + L   G  LH
Sbjct: 9   FRFFEAAAQTGSFVKAAESLHVTHGAVSRQIRLLEEALGVELFERRNRAIFLNAAGRSLH 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            VT  V+ +LE     LQ+ +      L    TI +    L   L  F    PDI++ L+
Sbjct: 69  TVTQSVFEQLEGAVYRLQQGAQDEVLTLSCEPTIAM--KWLIPRLPAFNQANPDIKLHLV 126

Query: 128 LDNKDIDISMDYADCAIR 145
                ID      D A+R
Sbjct: 127 AAGGPIDFVRSGVDLALR 144


>gi|163751650|ref|ZP_02158870.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161328476|gb|EDP99631.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 291

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 18/250 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF   AR   F+ AA++L ++QS++S Q+  LE     KLF R  RGL LT +G  L+
Sbjct: 10  LQVFEAAARQEHFSRAADELFITQSAVSHQVRVLEEHFSEKLFIREGRGLQLTSKGKLLY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S ++  L       Q+ S   S  LR+A         L   L +F   +PDI I+L 
Sbjct: 70  QELSHIFDSLSRLN---QKISGGYSQDLRLAVYSSFAVKWLIPRLSDFRRQHPDINIRLN 126

Query: 128 LDNKDIDISMDYAD---CAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +   D ++S   AD   C            L Q +L+ +      +P   +   E + + 
Sbjct: 127 MITDDPELSDSVADMFICGQTDHPGFWHQRLHQERLIPV-----CSPELFERG-EQIELA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSY-LSIMQYCVLGSGIA 242
            L  H L+T    + +  + F+W L + +  +  P    +   S+ L  ++  + G GIA
Sbjct: 181 SLFNHPLLT----VDEGPQGFDWQLWSQENKLVFPEAQQMHAFSHVLLAIEAAIAGQGIA 236

Query: 243 LLPDYIVKDN 252
           L  D++V  +
Sbjct: 237 LASDFMVTKD 246


>gi|187928466|ref|YP_001898953.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725356|gb|ACD26521.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 299

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 112/276 (40%), Gaps = 54/276 (19%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD + L+V   V   GS   A+E+ H+  S+ISR+I+ LE + G  L YRH+RG+  T
Sbjct: 1   MRFDLESLQVLVSVIEEGSLAAASERQHIVPSAISRRIAELENDAGTALLYRHSRGVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             GS L+     +  +++    E+ E +    G +R+          L G+L  FL + P
Sbjct: 61  PAGSALYYRAKRLIDQMQEISSEMSEYAQGVRGHVRMHVNFSTMVQYLPGDLSSFLSINP 120

Query: 121 DIQIQLILDNKDI---DISMDYADCAIRLRKPIQSSSLIQRK-------LVTIHMHAYAA 170
           D++I L+  +       +    AD  I   +P  +  L  R        L+  H H   A
Sbjct: 121 DVKIDLMEKSSSQVLRSVEAGTADIGI-CSQPEAAPGLEVRPYHVDRLVLIVPHDHPIGA 179

Query: 171 PHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL------- 223
             +L+                  F D +     D+++   V  P+G   IS L       
Sbjct: 180 ARHLR------------------FADTL-----DYDY---VSMPLGA-SISTLCAQSAEQ 212

Query: 224 ---------QVNSYLSIMQYCVLGSGIALLPDYIVK 250
                    QV S+  +      G GI LLP   VK
Sbjct: 213 AGKQHKIRIQVTSFEGLRNMVAAGLGIGLLPKASVK 248


>gi|85707333|ref|ZP_01038416.1| transcriptional regulator CatR [Roseovarius sp. 217]
 gi|85668141|gb|EAQ23019.1| transcriptional regulator CatR [Roseovarius sp. 217]
          Length = 296

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 129/281 (45%), Gaps = 25/281 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            ++ +L  F  VA    F  AAE+L ++Q  +SRQI  +E E+   LF R    ++LT+ 
Sbjct: 1   MNFRQLTYFIAVAEELHFGRAAERLDMAQPPLSRQIKQIEEELEAILFNRGRSAISLTQA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +  +LE T++E++       G+LRI         +L   +K F   YP++
Sbjct: 61  GERLLERGRSILAQLEDTKLEVRRLGQGAEGRLRIGFVGSATFGILPNIIKSFRANYPEV 120

Query: 123 QIQL-ILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYL-KNCRE 179
            + L  ++N  +  ++   +  +   +P +     + R+L+   +   A P  +    R 
Sbjct: 121 NLSLNPMNNAQLHRALVSRELDVAFARPALSDQEFVTRELMEEKL-ILALPDTVDTGGRT 179

Query: 180 PLSIQELDKHNLI--------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
              ++ L+ HNL+        +F D + K +E   + A +       RI C+ + + LS+
Sbjct: 180 VAKLERLETHNLVLYPEYPRPSFADFVLKAIEGAGFRAPL-------RIWCMDLQTALSL 232

Query: 232 MQYCVLGSGIALLPDYIV---KDNPNLVRIMEDVITPSFTV 269
           +    +G G+ ++P+ +    +     +RI  ++   S +V
Sbjct: 233 V---AIGEGVCIVPESVSTAPRKGMKFLRIEPEIARTSLSV 270


>gi|83749711|ref|ZP_00946690.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207738524|ref|YP_002256917.1| transcriptional regulator protein [Ralstonia solanacearum IPO1609]
 gi|83723636|gb|EAP70835.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206591892|emb|CAQ58798.1| transcriptional regulator protein [Ralstonia solanacearum IPO1609]
          Length = 289

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 4/175 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             WD +R F  +AR GS + AA +L +  ++++R+   LE  +G++LF R  RG  LT +
Sbjct: 1   MQWDDVRYFLALAREGSLSAAARRLGVEHTTVARRAEALEQALGVRLFDRLPRGWRLTAE 60

Query: 63  GSKL-HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G  L  R            +      S++  G +R++    L  +++  NL      +P 
Sbjct: 61  GGALAERAGRMEQEAAGFARAAAGAGSLR--GTVRVSAPPTLASHIIAPNLATLRRQWPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           I + L+ + ++ ++    AD A+RL +P  S++L  R L  +    YA P  L  
Sbjct: 119 IDLVLLGERRNANLMAHEADLAVRLSRPT-SAALSTRPLGELGYGLYATPELLAR 172


>gi|258620925|ref|ZP_05715959.1| Glycine cleavage system transcription activator [Vibrio mimicus
           VM573]
 gi|258586313|gb|EEW11028.1| Glycine cleavage system transcription activator [Vibrio mimicus
           VM573]
          Length = 305

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 135/297 (45%), Gaps = 33/297 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  FYV  + GSF  AAE L +S ++IS+QI  LE  + ++LF R  R + LT++G  L 
Sbjct: 7   LYYFYVACQQGSFKAAAEHLFVSPAAISQQIRQLEEWLNVELFLRQHRRVKLTQEGEHLS 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T + +  L+   I L  S   P  +L I+T     Q+ L   L  F   + D  I L+
Sbjct: 67  QYTQKGFAHLQEG-IRLLNSDPNPH-QLSISTLPSFAQHWLVPRLTGFKSRHND--IALL 122

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+  +  I+ D++   + +R  +     I+ + +   +  Y A H       P+ +Q+  
Sbjct: 123 LEPTNQLITFDHSKIDLCIRYGLGGYPNIESQWLMDDV-LYPACH-------PIYLQQ-- 172

Query: 188 KHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS--- 239
            HN+ T       DLI     D +W A+  + +G   + C Q         + + G+   
Sbjct: 173 -HNIKTIEDISRVDLIEDTWPDMDW-ASFTQTLG---LKCSQSTIKYEGSHFVLEGALAV 227

Query: 240 -GIAL----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G+AL    L    +K+   LVRI    + P +  Y C P       K++ FR+++ 
Sbjct: 228 QGVALVRHSLAARYIKEG-KLVRIGNTALKPKYRYYLCAPSGYFKREKVQLFRHWLL 283


>gi|229528114|ref|ZP_04417505.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229334476|gb|EEN99961.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
          Length = 308

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 11/254 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE G   H+ 
Sbjct: 9   LFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTESGVLYHQA 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP++   L L+
Sbjct: 69  CLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPEVVPYLYLN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   +++    D  IR  + +  SSLI RKL T      A+P YL     P + Q+L +H
Sbjct: 129 DNISNLAESGLDVVIRYGE-LADSSLISRKLATSRRVLCASPVYLARKGIPKTPQDLAQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGIALLP 245
           + +    ++    E   W    +    + ++  +   S+      I Q+ + G GIAL  
Sbjct: 188 DCLA---MVRSNEEMKTWHFQENE---QHKVITVVPKSFADDGEVIRQWALAGMGIALKS 241

Query: 246 DYIVKDNPNLVRIM 259
              V+D+ N  R++
Sbjct: 242 ILDVQDDLNQQRLV 255


>gi|218507103|ref|ZP_03504981.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 245

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 2/142 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR+GS T AA +L L+QS++SRQ+S LE ++G++LF R  + + LT  G    
Sbjct: 16  LAAFEAVARTGSVTAAARELDLTQSAVSRQVSALEEQLGVELFLRERQTMRLTLAGDGYA 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   E   ++ +  + L+ +     G L +A     G   L   L  FL   P + I L 
Sbjct: 76  REIREALRRISSASLNLRAN--PHGGTLNLAILPTFGTRWLAPRLGRFLAANPGVTINLA 133

Query: 128 LDNKDIDISMDYADCAIRLRKP 149
                 D  +D  D AI    P
Sbjct: 134 TRLSPFDFRLDSIDAAIHFGHP 155


>gi|293606615|ref|ZP_06688971.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292815000|gb|EFF74125.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 300

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 24/269 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ LR+F   A  GSF+ AA +L +S +  S  +  LE  +  +LF R  R L LT  G 
Sbjct: 4   FEDLRIFVASADHGSFSVAARELDVSPAVASAALKRLEQILDARLFVRSTRSLRLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L+  +  L       SG L ++   DLG+++L   L +F   +P +  
Sbjct: 64  RYLEYARSAIATLDAGKNALARDKTAISGTLSVSIPSDLGRHVLLPWLDDFQHQHPSVNF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           Q+ + ++  D+     D AIR  KP   S+L+   L   +     A+P YL     P   
Sbjct: 124 QVRISDRLADLYRQPVDIAIRYGKP-GDSALVALPLAEHNRRVVCASPAYLARHGVPQKP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPRIS--------------CLQ 224
           ++L  HN ++F  ++ + + D  W    D      P+   R+                + 
Sbjct: 183 EDLRAHNCLSF--VLGETLHD-RWAFERDGTAMTVPVKGDRVGDDGDLVRRWALAGKGIA 239

Query: 225 VNSYLSIMQYCVLGSGIALLPDYIVKDNP 253
             S   +++    GS +ALLPDY  + +P
Sbjct: 240 YKSRYDVLRDLRGGSLVALLPDYATEPSP 268


>gi|260555352|ref|ZP_05827573.1| D-serine deaminase transcriptional activator [Acinetobacter
           baumannii ATCC 19606]
 gi|260411894|gb|EEX05191.1| D-serine deaminase transcriptional activator [Acinetobacter
           baumannii ATCC 19606]
          Length = 304

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 137/298 (45%), Gaps = 19/298 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTEQ 62
           + LR F   AR  SF+ AA++L+++ +++ + +  LE  +G  LF+R   G   L  TE 
Sbjct: 8   NALRAFEASARHKSFSAAAKELNVTPAAVGQLVRTLEDWLGFPLFHRQTNGKNRLVATEL 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              +       + KL     +L++ S+  SG L IA +    +  L   +  F   YPDI
Sbjct: 68  AESVLPDIRAGFDKLTLALEKLKQDSL--SGMLNIAVSPAFAEKWLLPRIDHFQKQYPDI 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L ++ K +D      D  +R  +  Q   L   KL+   ++   +P +L      L+
Sbjct: 126 DIRLDINLKTVDFLEQKVDVGVRYGQG-QWQGLEAVKLMDEEVYPVCSPAFLNEHSFLLT 184

Query: 183 IQELDKHNLITFGDLIPKCMEDF----NWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVL 237
             +L   N+    DL  +  + F    +WL +V   + +  IS  +Q+NS  +++Q  + 
Sbjct: 185 PNDLK--NITLIHDLSMEKHQQFPGWQSWLKSVG--LNDINISRGMQINSSSAVLQAAME 240

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+AL    +V+ +     L+R+   +  +  F+ Y  Y     N  K+K   ++ F
Sbjct: 241 GHGVALARSVMVQKDIQTGRLIRLFPQIHFSSPFSYYLVYRPQYANLPKVKICLDWFF 298


>gi|126741296|ref|ZP_01756974.1| transcriptional activator AmpR [Roseobacter sp. SK209-2-6]
 gi|126717614|gb|EBA14338.1| transcriptional activator AmpR [Roseobacter sp. SK209-2-6]
          Length = 301

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 130/306 (42%), Gaps = 41/306 (13%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF   AR GSF+ AA++L ++Q+++S QI  LE   G  LF R  RG+  T  G    
Sbjct: 14  VRVFEAAARLGSFSRAADELAMTQAAVSYQIKQLEDRAGQPLFRRLPRGVVPTLAGKAFQ 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +E   +L     EL  +  +    L I+T       +L   L  F +  P I  ++ 
Sbjct: 74  RQAAEALDRLRQGWAELLGAEGE---DLVISTIASFAAFILGPWLGLFQVANPGITTRVD 130

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKN-------- 176
           ++ +  D+    A  AIR  +   P  ++ L+ R   T     Y  P  L+         
Sbjct: 131 VNPRPADLLAGEASIAIRAGRGDWPGLAADLLIRASYT----PYLTPALLEEHGPFNTPS 186

Query: 177 --CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
              R PL I   D    I F D            A V+ P    R S   + S L  +Q 
Sbjct: 187 DLLRVPL-IDASDPAWAIWFRD------------AGVEPPKSLERHS---LGSQLLEVQA 230

Query: 235 CVLGSGIALL-PDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G G  LL P Y   +VK    LV+  + V     +++  YPEA +    + AFRN++
Sbjct: 231 ALAGQGACLLTPAYARGLVKSG-ALVQPFDLVTEDDISIWLVYPEARREAPSIVAFRNWL 289

Query: 291 FLKARD 296
             + ++
Sbjct: 290 MAQIKE 295


>gi|71282457|ref|YP_271302.1| DNA-binding transcriptional regulator DsdC [Colwellia
           psychrerythraea 34H]
 gi|71148197|gb|AAZ28670.1| D-serine deaminase activator [Colwellia psychrerythraea 34H]
          Length = 319

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   K+  F V AR  SF+ AAE+L ++ S+IS +I+ LE+E+GI LF R  R + LT+
Sbjct: 16  SFQLSKMHTFEVAARHCSFSLAAEELSMTPSAISHRINALESELGILLFKRSHRKIELTK 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +++      +  L    +E++ + +  SG+L + +     Q  L   +  F   YP 
Sbjct: 76  EGERIYIAVKSSFSSLNQEILEVKSNEI--SGELTVYSRPSFAQCWLVPRIAGFQKQYPA 133

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
           I + ++  N++I+      D AI   +  Q S L  + ++T  +    +P Y
Sbjct: 134 ISLNILTGNENINFHGHGIDVAIYFDEK-QPSKLYCQDIMTETIVPVCSPEY 184


>gi|73539316|ref|YP_299683.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122653|gb|AAZ64839.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 312

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 116/250 (46%), Gaps = 7/250 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  +  +G+ + AA +L ++++++S  +  LE E+G++L  R  R +  T  
Sbjct: 1   MDLNALRLFVDIVDAGNLSAAARKLKMTRANVSYHLKALEEELGVQLLRRTTRHVEPTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+     +  ++      +        G +R++    LG  +L   L +F   YPDI
Sbjct: 61  GAGLYEHGRNILGEVAAANALISNMGKSLQGHVRLSVPTGLGHTMLSPLLVQFKQRYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ DN+  ++  +  D A+R+       S++  ++  +     AAP YL     P  
Sbjct: 121 LLDVVFDNRVHNLVSEDVDVALRIIS-TPPDSVVATEIGEVDWVVCAAPAYLAAHPAPTV 179

Query: 183 IQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + ELD H ++     G  +       + +   ++ + EP +S    +++  + +  + G 
Sbjct: 180 LAELDGHAVVCASPVGQKLKVSGLPPHGVGAREQIVLEPTLSS---DNFGFLKEAVLAGL 236

Query: 240 GIALLPDYIV 249
           GI + P Y +
Sbjct: 237 GIGIFPIYAI 246


>gi|27381940|ref|NP_773469.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355110|dbj|BAC52094.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 312

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 18/241 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF   AR+GSFT AA +L+++Q ++SR +   E  +G++LF R A    LTE+G  
Sbjct: 12  NALFVFDAAARNGSFTAAAAELNVTQPAVSRMLGQFEQHLGVRLFDRKAGRAVLTEEGEL 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+R   E +  +E+  +E+ E   K +  + ++ +     + L   + +    +P++ ++
Sbjct: 72  LYRRVLEGFRSIESGLVEI-ERRRKGTETVTLSVSSAFTTHWLMPRIDKLQRQFPEVDLR 130

Query: 126 LILDNKDIDISMDYADCAIRLR---KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             L +  +   ++  D  +R R   +P    +L+ +++    M    +P YL        
Sbjct: 131 FQLISGALRGPVENVDLGMRFRDRDEPSSGGTLVMKEV----MLPMCSPGYLGET----- 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               + + +I   +       D+  L T  R   +     L    Y  +MQ  +LG GIA
Sbjct: 182 -DPAEGNTIIRLAETPGDWAADYASLLTGRRGAAK----ALSFTDYAVVMQAALLGQGIA 236

Query: 243 L 243
           L
Sbjct: 237 L 237


>gi|294626800|ref|ZP_06705393.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598916|gb|EFF43060.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 300

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 13/199 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     +  F  VAR+G F  AA+   +S S+ S  I  +E  +G++LF R  R + LT
Sbjct: 1   MSGHLADMEAFVRVARAGGFREAAKSAGVSASTYSDAIKRMEASLGVRLFNRTTRSVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ L    +    +LE  +  +      P+G LR+   +   + +L   L  F+  YP
Sbjct: 61  DAGNALLARIAPALLELENAREVVSAFRDTPTGTLRLNVPVSAARLVLPRILPAFMAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-------HMHAYAAPHY 173
           DI ++++ +   +D+     D  IR          +Q+ +V I        +   AAP Y
Sbjct: 121 DITLEILTEESFVDVIAARCDAGIRY------GERLQQDMVAIPIGPRVQRIATAAAPGY 174

Query: 174 LKNCREPLSIQELDKHNLI 192
           L     P   ++L  H+ I
Sbjct: 175 LDRRGRPTHPRQLVAHDCI 193


>gi|310814584|ref|YP_003962548.1| transcriptional regulator LysR family protein [Ketogulonicigenium
           vulgare Y25]
 gi|308753319|gb|ADO41248.1| transcriptional regulator LysR family protein [Ketogulonicigenium
           vulgare Y25]
          Length = 338

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 11/239 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    RSGS   A E L +S S+I+RQI  LE ++  +LF R A G+ LT  G  L+
Sbjct: 26  LRYFSETVRSGSMRQAGEVLAVSASAINRQIMKLEDQLQCRLFERRAEGVRLTAAGEVLY 85

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +LE    ++ +      G + IA    +G++ L   L +F   +P +  ++ 
Sbjct: 86  QYVRRLDRELERAIGQIDDLRGLRRGHVHIACEAGIGRDFLPAVLADFHASHPGVTYKVE 145

Query: 128 LDNK-DI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +  +I   ++ D  D  I +  P +  + I  + + + +   AAP +    +  L +Q
Sbjct: 146 IKSALEILEQVATDEIDIGIAMSPPTRPEAAIGGRAL-MPLGVIAAPGWPLAAKSSLRLQ 204

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS--YLSIMQYCVLGSGI 241
           +L     I   D +      + W   +D+  G P+ + L+ NS   +S+M    LG GI
Sbjct: 205 DLGGERYIRAKDGMGG---GYGWQKIIDQ--GAPQAAILETNSPDIMSVMVKAGLGIGI 258


>gi|301384983|ref|ZP_07233401.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060373|ref|ZP_07251914.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302133309|ref|ZP_07259299.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 274

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 132/287 (45%), Gaps = 22/287 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F   A   S + AA++  +  +++SR+I+ LE  + +KL  R  R   LT+ G KL 
Sbjct: 1   MRYFLTFAAVKSLSGAAKKSGVEHATVSRRIASLEKSLNVKLVDRRKRLYELTDDGRKLA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   +  + E        +   P+ ++ I+    +    L   L  F  ++P I ++L+
Sbjct: 61  VIGRRIEEQAEAIGRLAVAAQDAPATEVTISAPSSVAIEKLVPQLGAFRAMHPGIVLRLL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D++   +S   +D  IR  +P++ + ++ R++ T     Y +  YL+        Q L 
Sbjct: 121 GDHQYSSLSSCQSDLCIRFSRPVE-NGIVARRIGTASFSFYCSSFYLE--------QRLA 171

Query: 188 KH-NLITFGDLIPKCMEDFNWLATVD-RP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            H   I +   +    ++    A V  RP + E +   LQ+ +  +       G GIALL
Sbjct: 172 VHYEFIGYDSEVMTASQNAELKAIVGARPFVLEAKTVELQIRAAEA-------GVGIALL 224

Query: 245 PDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           PD+ V+ NP L R+  ++  P    V+    E L++   ++A  N++
Sbjct: 225 PDFAVEQNPRLCRL--ELSRPLEVDVWLGVHEDLRSVASIQAAMNYV 269


>gi|228966374|ref|ZP_04127428.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793303|gb|EEM40852.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 283

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 37/264 (14%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L VFY VA+  + +HAA+ L+  QS ++ ++  LE E+G+ LFYR+ +G+TLT  
Sbjct: 1   MDIKDLTVFYEVAKEKNISHAAKNLNYVQSGVTMRMKQLENELGVPLFYRNGKGVTLTSN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++ H ++ +   +Q + ++P G L+I  T       L   L  +   YP  
Sbjct: 61  GEILLTYAKQIIHLIDQSVKAVQSNGIEPRGTLKIGCTESTTAVRLPSILTAYYEKYP-- 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-----------VTIHMHAYAAP 171
           +++LIL++       +  +  IRL        +++RKL             +H + +   
Sbjct: 119 KVELILES-------NTTEQLIRL--------VLERKLDGAFIAGSTQHTELHTNIFREE 163

Query: 172 HYLKNCREPL-SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
             +   + PL S +++   NL+ F  G      +ED  WL   +  I   R+  L+  + 
Sbjct: 164 ELVLISKNPLSSFKDIGDMNLLAFSRGCYYRNLLED--WLQ--EEGISPKRV--LEFGTI 217

Query: 229 LSIMQYCVLGSGIALLPDYIVKDN 252
            +I+     G GIA++   I+ D+
Sbjct: 218 EAILACIKSGMGIAIMMKSILNDH 241


>gi|157369778|ref|YP_001477767.1| DNA-binding transcriptional regulator CynR [Serratia proteamaculans
           568]
 gi|157321542|gb|ABV40639.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 300

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 120/289 (41%), Gaps = 21/289 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  G+FT AAE LH+SQ ++S+QI  LE  +G  L  R  R + LT+ G+   
Sbjct: 6   IRYFLAVAEQGNFTRAAEVLHVSQPTLSQQIKQLEETLGTPLLDRSGRTVRLTDAGAAWM 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI--- 124
           R        L+     + + +    G LR+A T      L+   +  F   YP I +   
Sbjct: 66  RYARRALQDLDEGARAIHDVATLERGNLRLAMTPTFSAYLVGPVIDAFYRRYPGISLSIQ 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKP----IQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++  D  +  ++ D  D  I   +     I+++ L    L  +      A H L   + P
Sbjct: 126 EMTQDRIEALLAEDQLDLGIAFGQAQSPDIEANDLFSESLNMV----VGADHLLAQRQHP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237
           L+ +EL++  L           EDF     +D    +  I     ++ N+  +I++    
Sbjct: 182 LTAEELERQPLALLS-------EDFATRQFIDGYCRQQSICPWVAVEANAIGAILEIVRR 234

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           G    +LP  I + +P L  +   V  P+        ++   +   +AF
Sbjct: 235 GQLATILPAAIAQADPQLRSVQLAVALPARRAVLLQRKSAYRSAASQAF 283


>gi|254251306|ref|ZP_04944624.1| hypothetical protein BDAG_00487 [Burkholderia dolosa AUO158]
 gi|124893915|gb|EAY67795.1| hypothetical protein BDAG_00487 [Burkholderia dolosa AUO158]
          Length = 330

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 137/297 (46%), Gaps = 14/297 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F   AR  +F+ AA++L ++  ++S Q+  LE E+G++LF R+ + L LT  G +
Sbjct: 10  NAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEEELGVQLFARNGKRLCLTGAGMR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     E++ S      +L ++         +   +  F+  +P+I ++
Sbjct: 70  YAQQVRTALMMLADATREVRASDR--DRRLVVSMLSSFAARFITPRIGTFIERHPEIDVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N   D + D  D AIR          ++  L  +   A +    L   + P +  +
Sbjct: 128 LQSTNALTDFARDDVDLAIRFGFGTYPGLYVEPLLDEVFFPACSP--TLNGGKLPQTPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  +NL+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIA++ 
Sbjct: 186 LAHYNLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSS-NLLQAAIDGQGIAIVR 240

Query: 246 DYI-VKD--NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             + V D  +  LVR+  D+  PS +  +F  P  L +T +++AFR +I  +   +K
Sbjct: 241 RSLAVHDLLDGRLVRLF-DIDGPSPWHYFFVCPPPLLSTPRVQAFRTWILQEVAQFK 296


>gi|77165872|ref|YP_344397.1| LysR family transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|254433181|ref|ZP_05046689.1| LysR substrate binding domain protein [Nitrosococcus oceani AFC27]
 gi|76884186|gb|ABA58867.1| transcriptional regulator, LysR family [Nitrosococcus oceani ATCC
           19707]
 gi|207089514|gb|EDZ66785.1| LysR substrate binding domain protein [Nitrosococcus oceani AFC27]
          Length = 325

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 14/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  V   G+ + AA  L  ++ SISR+IS LE  +G  L  R  R ++ TE+G  
Sbjct: 26  EDIRAFCAVIEFGTVSGAARTLGETKGSISRRISRLERRLGAALLARTPRAVSATEEGLA 85

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E    L      +++S + P G LR+   IDLG ++L   + +F  L+P I ++
Sbjct: 86  FYAKAREALSLLADGAEGVRQSRLVPQGHLRVTAPIDLGVDVLPPLVVKFRALHPQITVE 145

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK--LVTIHMHAYAAPHYLKNCREPLSI 183
           L+L +  +D++    D A+R   P +   +  R   ++  H+  YA+P YL     P   
Sbjct: 146 LLLTDAALDLAAHRIDLALRA-TPGELPDMGYRASTVIGFHIGLYASPAYLAAHDLPTVP 204

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240
           Q L +++    G +    +    W+ T DR      ++   V   + Y S+ +  + G G
Sbjct: 205 QALVEYD----GVVRQAGVGAAKWVLT-DRRSRAVEVAVRPVVWASDYASVHRIILAGGG 259

Query: 241 IALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP            LV ++ +       +Y      L+   +++ FR FI
Sbjct: 260 IGPLPSMVAAASVAGGALVPVLPEWTLVKGKLYAISLSGLEAPARVRLFRAFI 312


>gi|77459504|ref|YP_349011.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383507|gb|ABA75020.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 294

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 135/294 (45%), Gaps = 25/294 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  S+T AA +L L+QS++SRQ+  LE  +G++LF R  R + LT+ G    
Sbjct: 13  LLAFEAAARHESYTRAAHELSLTQSAVSRQVQILEKMLGMRLFSREGRRVILTDVGRMYQ 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSG--KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           R  SE   ++ +  +   ++    SG   LR+AT    G   L   LK+F   +P + + 
Sbjct: 73  RELSEALGQIRSATL---QAMAFGSGIHSLRLATLPTFGSKWLLPRLKDFYTAHPGMTVH 129

Query: 126 L--ILDNKDIDIS-MDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           L   ++  D D S +D A C      P + +  L   +LV I      A   L +     
Sbjct: 130 LHSRIETIDFDTSEIDAAICVGGGDWPGLTAHRLHTEELVVI------ASAQLSDAERRA 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           + +++    L+          E F+  A   R +   RI    ++ S+L  +Q      G
Sbjct: 184 ADKDIAGQLLLNVSSNAQAWSEWFSHHALPHRSM---RIGPSFEMTSHL--IQAVRANIG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           I L+P  +V+D   N  L+++ E  I+   + Y  YP   ++   LKAFR+++ 
Sbjct: 239 IGLVPRILVEDELHNGELLQLGEP-ISSRRSYYLVYPARNESLASLKAFRDWLM 291


>gi|332141389|ref|YP_004427127.1| transcriptional regulator, LysR family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551411|gb|AEA98129.1| transcriptional regulator, LysR family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 302

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L V   VA   + T AA  L++  ++ S  +  +E  VG +LF R  R L L+  G +
Sbjct: 4   DDLNVVIKVAEFRNITAAATHLNMRTATASAAVKRVEQAVGAELFVRTTRSLRLSSAGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    L+  +  L+  +    G+LR+  + DLG+N++   L +F+  +  I ++
Sbjct: 64  FLPTCEQAMSMLKNAKQNLKGETGVIEGELRLGLSSDLGRNVIAPWLDDFMNEHEKISVK 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L++ +ID   D  D A+R   P   +S+   K+  +     A+P Y+     P   ++
Sbjct: 124 LNLNDSNIDFYRDPIDLALRYGSP-DDASVYGFKICDVPRLLVASPSYISTYGAPEQFED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           L  HN + F  L  K   ++ ++       G+P    +Q N   +    + ++ V G G+
Sbjct: 183 LQAHNGL-FYQLHDKVYNEWEFVHE-----GKPLKIKMQGNRTANDGEMVRRWAVAGKGV 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+       D   N  L+ ++ D       ++   P     T  ++  R+ +
Sbjct: 237 AVKSSLDACDDILNGRLITLLSDYQPKPTQLWLICPSRQSITPAVRLLRDML 288


>gi|294146795|ref|YP_003559461.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292677212|dbj|BAI98729.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 307

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 12/240 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT AA +L +SQ ++S  ++ LE  +G++LF+R  RGL+LT++G  
Sbjct: 9   NALRAFEAAARHLNFTRAAIELCVSQGAVSHHVAQLERRLGVRLFHRLPRGLSLTDEGRA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V +E + ++  T  +      +   K+ +  T   G   L   L  F   +P I ++
Sbjct: 69  LVPVLAEAFDRVGATLDQYAGGRFREVLKVGVVGTFAAG--WLLPRLDAFARAHPAIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +N  +D++ +  D AIR        +  +  L+   M    AP      R P  +  
Sbjct: 127 VSTNNNRVDLAGEALDFAIRFGDGAWHGTQAE-PLIEAPMTPLCAPALAARLRSPADV-- 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +  L ++     +  E   W    D P+  P       +S   ++   + G G+AL P
Sbjct: 184 LHERLLRSY-----RPDEWALWFEAADIPV--PLFRGPVFDSSALMVSAAMAGFGVALAP 236


>gi|300778782|ref|ZP_07088640.1| LysR family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
 gi|300504292|gb|EFK35432.1| LysR family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
          Length = 292

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 76/130 (58%), Gaps = 1/130 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD+ +L+VF+ VA   SFT A+E+LH+SQ ++++ I  +ET+VG KLF R    + LT+ 
Sbjct: 2   FDY-RLKVFHTVASRLSFTKASEELHISQPAVTKHIKEIETQVGAKLFDRKGTSIQLTQS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+    ++ +     + E+ + + +  GKL I  +  + Q +L   L +F   Y DI
Sbjct: 61  GKILYEHAEKIRNIYRDMEFEISQINQQHKGKLIIGASTTVAQYILPEILAKFNTYYKDI 120

Query: 123 QIQLILDNKD 132
           +I+L+  N +
Sbjct: 121 KIELLTGNTE 130


>gi|50122872|ref|YP_052039.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613398|emb|CAG76849.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 296

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            R F   A++GSF  AAE LH++  ++SRQI  LE  +G++LF R  R + L   G  LH
Sbjct: 11  FRFFEAAAQTGSFVKAAESLHVTHGAVSRQIRLLEDALGVELFERRNRAIFLNAAGRSLH 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            VT  V+ +LE     LQ+ +      L    TI +    L   L  F    PDI++ L+
Sbjct: 71  TVTQSVFEQLEGAVYRLQQGAQDDVLTLSCEPTIAM--KWLIPRLPAFNQANPDIKLHLV 128

Query: 128 LDNKDIDISMDYADCAIR 145
                ID      D A+R
Sbjct: 129 AAGGPIDFVRSGVDLALR 146


>gi|88799223|ref|ZP_01114802.1| substrate-binding transcriptional regulator, LysR family protein
           [Reinekea sp. MED297]
 gi|88777982|gb|EAR09178.1| substrate-binding transcriptional regulator, LysR family protein
           [Reinekea sp. MED297]
          Length = 299

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 138/291 (47%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA+ GSFT AA  L +S+S +S+ I  LE  +G++L +R  R LTLT QG + 
Sbjct: 6   EIEAFIEVAQQGSFTQAAAHLDVSRSRVSQLILRLEERLGVRLMHRTTRSLTLTPQGEQF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDL-GQNLLQGNLKEFLLLYPDIQIQ 125
            +      ++L + + +L+  S + +G +RI +   + G+ +L   L + +  +P++ + 
Sbjct: 66  LQRCRTGMNQLSSAEADLKMMSHQLTGPIRINSVGGIFGEQILTHALTDLMSNHPELSVT 125

Query: 126 LILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +   +  +D++ D  D  +R+   P +++      L  +H    A+P ++     P    
Sbjct: 126 VDYSSMLVDMNRDPVDLVLRIGHAPAENTE--SAYLGEVHHSLCASPAFINRYGFPQHPD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +   I      PK  E    L+T +R +  P  S    NS    +   + G G++ L
Sbjct: 184 DLVRLPTICG---TPKIWE-LEHLSTGERQVITPNASWRSGNSNAQRI-ATIEGLGVSRL 238

Query: 245 PDYIVK---DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              I K   DN  LV +M    I P+F  +  +P   K T + +  R+ + 
Sbjct: 239 QTLIAKPELDNGKLVSVMPQWRIEPTF-FWLMWPRDKKLTLRNQTVRDHLI 288


>gi|224824268|ref|ZP_03697376.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603687|gb|EEG09862.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 320

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 6/194 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A  GS + AAE   +S  + S+ +  LE  +G++LF+R  R ++LTE+G +     
Sbjct: 12  FVRTAEFGSLSKAAEAQQISPQAASKALGQLEQYLGVRLFHRTTRSMSLTEEGQRFLEAV 71

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                  +     ++++    +G LRI     + Q+++   + E+  LYP++Q  + LD+
Sbjct: 72  HPSLVGFQQALSAVRQTKDDLAGPLRIVGPRTVLQSVIGPVMDEYCRLYPEVQPDVQLDD 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  +   D  D   RL    Q   L+ R+L  + +   AAP YL+    P S+ +L  H 
Sbjct: 132 RIGNWVEDRIDVGFRLGNSPQ-EGLVARRLFPMQLIICAAPSYLRKYGIPQSLYDLSSHR 190

Query: 191 LITF-----GDLIP 199
              F     G ++P
Sbjct: 191 CSAFRRASDGRVVP 204


>gi|134302431|ref|YP_001122401.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134050208|gb|ABO47279.1| transcriptional regulator, LysR family [Francisella tularensis
           subsp. tularensis WY96-3418]
          Length = 308

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 12/242 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++F  V   G+ + A  + +LS +SIS +I+ LE     KL  R  R +  T+ G KL
Sbjct: 6   ELKLFVAVINYGNLSAAGREFYLSPASISNKINALEEYYQTKLLIRITRKIEPTKAGEKL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++  +LE  Q ++Q +     G ++I    DLG+ ++   L EF    P+IQ  +
Sbjct: 66  YTTAIKLLEQLENLQEDIQNNENSAEGVIKITIPFDLGKQIILPILDEFKEKNPNIQYDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +  +    D AIR    +  S+ I +KLV  +    A+P YLK     + I   
Sbjct: 126 NLSDDVMSYNQFPFDIAIRYGN-LPDSNFIAKKLVDNYRMLCASPEYLK----KMDISNT 180

Query: 187 DKHNLITFGDLIPKCMEDFN----WLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSG 240
           D  N++   D I   +        +L   +    E  I  S +  N Y+S  Q C+ G+G
Sbjct: 181 DDINILQNCDFITLKINSNTIKKWYLIDQENNKHEVNIKPSYIVNNGYIS-RQMCLNGNG 239

Query: 241 IA 242
           I+
Sbjct: 240 IS 241


>gi|116694481|ref|YP_728692.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528980|emb|CAJ95327.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 325

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 19/296 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR+GS T AAE+L L+QS++S+QI+ LE+ +G ++  R    +  T  G    
Sbjct: 38  LIAFETTARTGSVTGAAEELCLTQSAVSKQITELESFLGARMLNRRKGAVAATPAGEDYL 97

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +    LE   +E+Q S     G+L ++  + LG   L   +  F+   P IQ+ + 
Sbjct: 98  RNVRKALALLEEATMEVQ-SGRAAGGRLNLSVPVSLGNIWLLPRILRFVKAQPQIQLNVT 156

Query: 128 LDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-PLSIQ 184
                +D+     D AI      P +  SL   K++ + ++   AP  L        +++
Sbjct: 157 TKVGPVDLESTGLDAAIMYCAGPPPRHFSL---KVMPLVLYPMCAPELLPGGGTLAKAVK 213

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L   + I   +  P  +        +  P    R   L +      +Q  V G G+ALL
Sbjct: 214 RLPLLHQIAALEAWPAYLRQAG--IKLPHPDDGSRYGLLTMG-----LQAAVSGMGVALL 266

Query: 245 PDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           PDY+  ++    R++    E  ++P    YF  PE  ++   ++ F  ++  ++ D
Sbjct: 267 PDYVAGEDIKAGRLLRLSDEPYVSPK-AYYFICPEDKRDNPAMQTFIAWLLEQSAD 321


>gi|58580558|ref|YP_199574.1| LysR family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84622513|ref|YP_449885.1| LysR family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578500|ref|YP_001915429.1| transcriptional regulator LysR family [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58425152|gb|AAW74189.1| transcriptional regulator lysR family [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84366453|dbj|BAE67611.1| transcriptional regulator lysR family [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522952|gb|ACD60897.1| transcriptional regulator LysR family [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 296

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 11/199 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  VA SGSF+ A E LHL+Q ++S++I+ LE ++  +LF R  R + LT
Sbjct: 1   MAMDLASLNAFVAVAASGSFSAAGEALHLTQPAVSKRIALLEAQLSARLFDRLGRQVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      +  +L+ T+  L+       G+L +AT+  +G + L   L+ F   +P
Sbjct: 61  EAGQALLPRAQRILAELQDTRRVLEHLGAAFGGRLSLATSHHVGLHRLPALLRSFATQHP 120

Query: 121 DIQIQLILDNKDIDISMDYA-------DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
               Q  LD + +D  + YA       + A+    P   + L  + +    +H   AP +
Sbjct: 121 ----QAALDIQFLDSELAYAAVLRGELELAVTTLAPETHAPLRAQPIWHDRLHCVVAPDH 176

Query: 174 LKNCREPLSIQELDKHNLI 192
               R  +S+ ++  H  +
Sbjct: 177 PLAARPAVSLDDVVAHPAV 195


>gi|119384455|ref|YP_915511.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119374222|gb|ABL69815.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 305

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 15/293 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  WD L+ F  V R G  + AA  L  S  ++SR+I  LE  +  +LF R+ RG   T 
Sbjct: 3   NLSWDDLQFFLAVVREGQLSRAARHLGTSHVTVSRRIDRLEQALNTRLFERNPRGYEPTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYP 120
            G +L  + +    +     I L++S+     + LR+A     G       L  F+  +P
Sbjct: 63  AGQRL--IEAAERMEEAAGLIPLEQSAAPGQARPLRLAMPEGFGSLFSTHLLPAFIARFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++LI   + + +S   AD +I L  P+ S      +LV   +H YA   +L++    
Sbjct: 121 LISLELITMPQVLSLSRREADISITL-DPVTSGPYRSERLVDYTLHLYATQAHLRSLPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRI-SCLQVNSYLSIMQYCVL 237
              ++L +   I +       +E+  +   +D  +GE  P I + ++ +S  + +     
Sbjct: 180 AGPEDLRQLRFIGY-------IEEMIFAPGLDY-LGEIHPAIRASVKSSSIFNQLAAVRN 231

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI +LP Y+    P L  ++ D +  + T +      L+    ++A   F+
Sbjct: 232 GLGIGVLPWYVAAKYPELQIVLPDRVRLTRTYWLTCHRDLRMMQWVRAVIGFL 284


>gi|327392682|dbj|BAK10104.1| putative HTH-type transcriptional regulator HI1364 YhjC [Pantoea
           ananatis AJ13355]
          Length = 295

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 6/175 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + +R F  VA +GSF+ AA QL++ QS++S+QI+ LE E+G+ L +R  R   LT
Sbjct: 1   MNNKLNAIRTFLRVAEAGSFSEAARQLNIKQSAVSQQIAALEAELGVVLLHRTTRVRVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            QG    R    +   ++  + +L   + +  GK+ +     LG+  L  +L       P
Sbjct: 61  AQGEYYRRKMQPILEAMQAVENQLSPVAQQWQGKINVQLPGGLGRLFLP-HLLGLQKANP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI--QRKLVTIHMHAYAAPHY 173
            + + L LD++  D++ +  D A RL    Q +  +   RK+  I    +A+P +
Sbjct: 120 GLHLTLSLDDRISDLAREGVDVAFRL---TQDAPEVYPARKIARIETPLFASPDF 171


>gi|293604255|ref|ZP_06686663.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292817480|gb|EFF76553.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 297

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 27/261 (10%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ FY VAR G+ T AA QL +SQ +++ Q+  LE+  GI+LF+R  RG+ L++ G  L
Sbjct: 15  ELKSFYAVARCGTVTKAAAQLGVSQPTVTGQLRQLESRYGIELFHRQGRGMRLSDAGQNL 74

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++  +       L+++S    G LR+  T   G   +   ++ +   YP I + +
Sbjct: 75  MPMVEKLVQQETEIDFRLRDASDLREGNLRVGAT---GPFYIMDTVRRYNQRYPGIDLAV 131

Query: 127 ILDNKD--IDISMDYADCAIRLRKPIQSSS-LIQRKLVTIHMHAYAAPHYLKNCREPLS- 182
            + N    +    DY       R  I +SS L+  K +   M A      + +   PL+ 
Sbjct: 132 TIGNSQSMLQALHDY-------RIEIATSSFLMDDKHLYRRMIAADPIRVVTHRDHPLAR 184

Query: 183 -----IQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
                + +L +H L+    G +  K  ED    A      G      L++ S  SI Q  
Sbjct: 185 RGRVRLADLAEHALLLREPGSMTRKLTEDALQAA------GVAVRRTLEIGSRESIRQAI 238

Query: 236 VLGSGIALLPDYIVKDNPNLV 256
           + G GI+L+P   +  +P+L 
Sbjct: 239 LCGLGISLIPSREIPSHPDLA 259


>gi|237729325|ref|ZP_04559806.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226909054|gb|EEH94972.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 302

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 1/189 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++   GSF+ AA+    + S+ISR  S LE  +G KL +R  R L L+E G  ++
Sbjct: 9   LATFVLIIDQGSFSAAAKASGATPSAISRSASRLEKALGSKLLHRTTRKLALSETGKIVY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+ H  +              G+L ++    +G+ ++   + EF   YP + + L 
Sbjct: 69  AHAQEMLHAAQMAVDSGSSRQTIAQGQLTLSVPKAVGRFVIHPLMAEFFTRYPQVDVCLR 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  D  D A+R+ +   S  L  + L+ +     A P YL+    P   Q L 
Sbjct: 129 LEDRYMDLIDDGVDLALRISQS-PSPGLYGKPLMPVSHVICATPEYLRKHGTPEHPQALR 187

Query: 188 KHNLITFGD 196
           +H+ I+ G+
Sbjct: 188 EHSCISLGE 196


>gi|165976207|ref|YP_001651800.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|165876308|gb|ABY69356.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 295

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 128/292 (43%), Gaps = 18/292 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  G
Sbjct: 2   DLNNLRLFVTVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTALG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+     +   L     +      + SG LRI+T        +   + EF   YP ++
Sbjct: 62  LQLYEKVYLILDNLTQATQDFIGEQQELSGYLRISTVS--ACEPIWAAIAEFQAEYPQVK 119

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +     ++ +D+  D  D A R+   + + ++I RK++ ++    A P +L     P + 
Sbjct: 120 VHCQATDRVLDLVEDGIDIAFRMGD-LHTENVIARKMMDLNAVLVAHPDFLARHGTPKTP 178

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYCVLGSG 240
           Q+L       +     K        AT+   +GE  +    +   N   +I         
Sbjct: 179 QDLTALPFACWARAGQKS-------ATLQ--LGEQAVKIEPIFTSNDVYAIAHQAKNAHA 229

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  LPDY+ +   +   LV +M D  T ++ ++  YP     +  +K F  F
Sbjct: 230 ICQLPDYMAQELTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGF 281


>gi|330876924|gb|EGH11073.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 302

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 129/294 (43%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  +A   SFT  A    LS ++++R ++ LE+ +GI L  R  R + LTE G + 
Sbjct: 6   EMTLFAALAGQTSFTGVARHFGLSTATVTRAVASLESRLGILLVVRTTRNMRLTEAGQRF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L+  +         P+G L +      G   +   L  FL  YP + I+ 
Sbjct: 66  AEDCRRLLTDLDEAENAAAGVHALPAGTLTVTAPQMFGALHVTPVLTRFLNEYPAVDIRA 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL ++ + +  +  D A+R+   ++ SSL    + ++     A+P YL     P    +L
Sbjct: 126 ILVDRVVSMLDEGVDVAVRI-GALRDSSLTAIPVGSVRRMVCASPAYLTQHGTPQHPDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  ++     P+     +W   VD       ++  L + S+ + +   +   G+  +P
Sbjct: 185 QLHATVSTS--APE--RPPHWAFRVDGQDYSVNVASRLSLTSFQASINAALQHWGLTQVP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            Y +++   N  LV ++ED       V+  Y E  + + K+++F +F     R+
Sbjct: 241 HYQIREHLQNGRLVCVLEDFEISPEPVHVVYSEGRRGSSKVRSFVDFCVSALRE 294


>gi|325123805|gb|ADY83328.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 324

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 11/246 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D    FY+V + G F+ A++  ++S+S +SR+I  LE +  + L  R  R   +T+ G 
Sbjct: 20  FDDFYYFYLVVKHGGFSAASDAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLGQ 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +V  ++E  +  L +   +P G ++I+    +    ++  L +FL  YP ++I
Sbjct: 80  EFYEECCKVITQVECAENVLLKQKSEPQGLVKISCPPLMMHFQIRKILNQFLKTYPKVEI 139

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R   + 
Sbjct: 140 SLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RVIQNY 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVL-GS 239
            EL     I+ G      +     +    TVD P  +PRI     ++ L+ + Y V+ G 
Sbjct: 199 SELQDFPSISLGTQKQNPIWHLCNIRNGETVDVPY-QPRIK----SNDLAGVYYAVMDGL 253

Query: 240 GIALLP 245
           GIA LP
Sbjct: 254 GIADLP 259


>gi|254182720|ref|ZP_04889313.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184213254|gb|EDU10297.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 298

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 126/301 (41%), Gaps = 34/301 (11%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F   A+  +F++AA +L L+ S++SRQI+ LE  +G+KLF R  R L LT  G   
Sbjct: 10  ELHAFASSAKHLNFSYAARELGLTPSAVSRQIASLEALLGVKLFVREGRNLALTRAGQVY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++    +EL  S+ +    L IA+        L   L  FL   PDI +  
Sbjct: 70  QARVAGPLREIGNASLELL-SAREDCNLLTIASVPTFTTKWLVPRLPRFLETAPDITLSF 128

Query: 127 ILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
                  D+     D AIR      + +Q   L  R  V +    +A  H L   REP  
Sbjct: 129 RRHLAPGDLFPLGLDAAIRYGDGRWEGVQCDYLDGRTFVPVCAPGFAERHAL---REPAD 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR-------PIGEPRISCLQVNSYLSIMQYC 235
           I    +        L+ +  E   WLA  DR        +  PR        Y  ++Q  
Sbjct: 186 IAAAPR--------LVHEQAE-CAWLAWADRHRATQMNALAGPRF-----EQYSVLIQAA 231

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITP----SFTVYFCY-PEALKNTGKLKAFRNFI 290
             G GIAL+P ++++       +++ +  P      + Y CY PE L+ +  L+  R ++
Sbjct: 232 QAGLGIALIPAFLIRAPLAAGTLVQPLDAPVDVDEQSHYLCYAPERLQASASLRLLREWM 291

Query: 291 F 291
            
Sbjct: 292 L 292


>gi|264678687|ref|YP_003278594.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262209200|gb|ACY33298.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 314

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 139/305 (45%), Gaps = 24/305 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M++    LR F  V +  S   AA+ LH++  ++S+QI  LE  +G+ L  R   G+ LT
Sbjct: 21  MNYPLQALRTFVEVGQRKSVKAAAQALHVTPGAVSQQIRVLEDRLGVVLLERERLGMRLT 80

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+ +H    E + +++     L+ S  + S  L ++T      + L   L  F  L+P
Sbjct: 81  EAGASVHPRLREAFLQIDQAMHALERSKGRRS--LTVSTVATFAASWLVPRLGRFKQLHP 138

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           DI+I++   ++ +D+  D  D A+R        ++ + L+   L  +     A+P +LK 
Sbjct: 139 DIEIRVEATSELVDLQRDRVDIALRHGLGDYPGLEVTCLMAPVLTPV-----ASPEFLKT 193

Query: 177 CREPLSIQELD--KHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIM 232
           CR  +  +  D   + L+  GD     +    WL    V       R S  + + +L ++
Sbjct: 194 CRGAVINEAGDCLDYPLLHDGDRADWPL----WLKAHGVADDARAQRGSAFE-DDFL-LI 247

Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +    G G+AL+P    ++      LV++++      F  Y        +  +++AF ++
Sbjct: 248 RAAEAGQGLALVPQAYAQEEIATGRLVQVLDKPWPARFAYYAVTRPGAADRSEVRAFLDW 307

Query: 290 IFLKA 294
           I  +A
Sbjct: 308 IRAEA 312


>gi|254481971|ref|ZP_05095213.1| LysR substrate binding domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037661|gb|EEB78326.1| LysR substrate binding domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 305

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 139/296 (46%), Gaps = 13/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  + R GS + AA+ L +S+SS+S+Q+  LE ++G +LF R  R + LTE G ++ 
Sbjct: 11  LILFSHINRQGSLSAAAQLLGISRSSVSKQLVALEEQIGSRLFNRTTRRIALTEVGKQVL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   L++ +   ++S    +G L +      G+  L   +  FL  YP + + L 
Sbjct: 71  LEAHKVELALQSIEHISEDSQSVVAGNLNVTCASAQGRIQLVPLITRFLAKYPQVNVNLQ 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D +IR+   +  SSL+ RK+  +     A+P YL     PL      
Sbjct: 131 LEDRFVDMVAENVDVSIRVGY-LPDSSLVARKIGELAGVLCASPEYLSTA-PPLETPSDL 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALL 244
            H+   F       M+ ++++       GE  ++    L +N   +++   +   G+ L+
Sbjct: 189 LHHRCLFYQNSQLAMKAWSFVGNE----GEETVTVSGPLSINDPGALISAALAHVGVLLI 244

Query: 245 PDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              ++ D   +  LV ++    +  S  +Y  YPE      K +A  +F+  +  D
Sbjct: 245 DKGLLGDTLRDGKLVPVLPGYCSIGSLPIYVVYPEREFVPAKTRALVDFLLHEMPD 300


>gi|217421078|ref|ZP_03452583.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           576]
 gi|217396490|gb|EEC36507.1| cyn operon transcriptional activator [Burkholderia pseudomallei
           576]
          Length = 311

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 132/303 (43%), Gaps = 35/303 (11%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  G+FT AAE LH+SQ ++S+QI  LE  +G++LF R AR + LTE G+   
Sbjct: 6   IRYFLAVAEQGNFTRAAESLHVSQPTLSQQIRQLEGVLGVQLFDRSARVVRLTEFGAAYA 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATT-----------IDLGQNLLQGNLKEFL 116
           R       +LE  +  + +     SG LR+A T           ID G N    NLK  +
Sbjct: 66  RHARAALQQLEAGRRAVHDVENLQSGSLRLAMTPTFSAYLIGWLID-GFNARYPNLKLTI 124

Query: 117 LLYPDIQIQLIL--DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
              P  QI+ +L  D  D+ I+ D          P+   +L    LV    H +A     
Sbjct: 125 REMPQEQIEPLLADDELDVGIAFDATQSPEIETMPLWIETL---ALVVGRDHRHA----- 176

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLS 230
              R+PLS  E     LI    L+ +    F     VD    R    PR++ ++VNS  +
Sbjct: 177 -RRRKPLSPDEAAGEPLI----LLSRA---FATRGKVDQYFHRNGVTPRVA-IEVNSISA 227

Query: 231 IMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++    G    +LP  I +   +L  I  D   P  T      +    +  ++AF + +
Sbjct: 228 MLEMVRGGRIATVLPSAIAERRDDLCAIRLDPPLPQRTAALLMRKGGYRSAAMRAFVDHM 287

Query: 291 FLK 293
             +
Sbjct: 288 LAR 290


>gi|167590811|ref|ZP_02383199.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 292

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 126/305 (41%), Gaps = 46/305 (15%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR GS + AA++LH++ S++S QI  LE+ +G+ LF R    + LT +G  
Sbjct: 9   NPLRAFEAAARLGSVSVAADELHVTASAVSHQIRILESTLGVLLFIRSKPRVKLTPEGEA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       +  +    ++L   +    G L ++T + L    L  ++ +FL  YP I ++
Sbjct: 69  LLEPVGRAFDMIANATVKLDSPAA--VGDLVVSTPLSLTSRWLARHISDFLKRYPGIHLK 126

Query: 126 LILDN-------KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH----AYAAPHYL 174
           +I  N        D+D+ + Y +   R R+            VT+ +H       +P  +
Sbjct: 127 VIPSNDDREVYSPDVDVCLRYGEGNWRSRR------------VTLLVHPTLFPVVSPALM 174

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI--- 231
                   +Q+L    L         C    +W+    R   E +   LQ    L I   
Sbjct: 175 NGPDAIRKVQDLAGRALF--------CEHSDSWM----RWFAEAKADKLQDIRILEIGNE 222

Query: 232 ---MQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
              ++    G G+AL     V+D   +  LVR    V+   +  Y      L +T  + A
Sbjct: 223 HIGIEAAARGQGVALGDSLSVRDDLLDGTLVRPFSTVVPARYAYYLVTRHELADTPLVTA 282

Query: 286 FRNFI 290
           F +++
Sbjct: 283 FMSWL 287


>gi|150376221|ref|YP_001312817.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150030768|gb|ABR62884.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 299

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  L++F + A   +F   A +L ++ + ++R I+ LE ++GI+LF R  R ++LT  G
Sbjct: 3   DYKALKIFLLAAEKRNFAQVARELDMTPAGVTRAIAALEYDLGIQLFVRTTRQVSLTTDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +            L+  + +++ ++    G+LRI+    LG+ +L   L  F  LYP + 
Sbjct: 63  AIFAAQVQPAVAVLDNARRDVRNANKADQGRLRISAPTWLGKTILPPILSGFRELYPKMS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP 171
            ++ L +  +DI     D AIR+         I RK+  +     AAP
Sbjct: 123 FEISLSDGLVDIVDGDYDLAIRISSAPSDKFTIWRKISVVRRVLVAAP 170


>gi|113869533|ref|YP_728022.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528309|emb|CAJ94654.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 306

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 126/291 (43%), Gaps = 17/291 (5%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+    F  V   GS   AA   +++   I R+I+ LE  +G+KL +R  R + +TEQ
Sbjct: 2   DKLKQIEAFIAVVEHGSMAAAALTQNVTPVMIGRRINALEARIGVKLLHRSTRRIAVTEQ 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+       +    L+  ++ + E   K +G L ++     G+  +  +   FL   P++
Sbjct: 62  GAVFMEQCKKALADLDRAEMLIAEGKHKATGHLIVSAPAAFGRKHVAPHAPAFLSANPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI   L ++ +D+  +  D  IR+   I   + +  KL +        P Y      P +
Sbjct: 122 QISFNLTDRVVDLVREGYDVGIRIGGAI-DPNFVAIKLASNKRVVCGTPAYFARYGVPQT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           + +L +HN + F     +  +   W  + +      R++  L  N    + ++   G G+
Sbjct: 181 LDDLAQHNCLAFN---LQGGQQRGWYFSQNGKTVTVRVNGNLDCNDGELLHRWTGEGLGL 237

Query: 242 A------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
                  +LP     ++  L+ ++++   P++ +   YP+      K++ F
Sbjct: 238 GWRSTWEILPQL---ESGELITVLDEYALPAYDILAVYPQQRPVPAKIRFF 285


>gi|17987856|ref|NP_540490.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. 16M]
 gi|17983586|gb|AAL52754.1| transcriptional regulatory protein, lysr family [Brucella
           melitensis bv. 1 str. 16M]
          Length = 327

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 7/189 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRV  +    G+ + A      S +  S +I  LE  +G++LF R  R LT TE G  
Sbjct: 32  DNLRVVEL----GNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRV 87

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI+++
Sbjct: 88  FYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEVR 147

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P S + 
Sbjct: 148 LRLSDHEVDIMSEGVDVAFKL-GVLENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPEA 206

Query: 186 L--DKHNLI 192
           L  D+H+ +
Sbjct: 207 LLSDRHHCL 215


>gi|157694233|ref|YP_001488695.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157682991|gb|ABV64135.1| transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 295

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 21/262 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT A++ L++SQ +IS+ +  LE E+ ++LFYR+ R + +T+ G  ++
Sbjct: 6   LTYFLEVARLKSFTKASQSLYVSQPTISKMVKNLEDELEVQLFYRNGRQVEMTDAGQTMY 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              SE+    +    EL +      G +RI     +G +     + EF   YPD+  QL+
Sbjct: 66  TQASEITQSFQNLTSELNDLMNVKKGHIRIGLPPMIGSSFFPNVMGEFRQQYPDVTFQLV 125

Query: 128 LDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++  I +     D ++ +     P          ++   M     P +    R+ + + 
Sbjct: 126 -EHGSIKVEEGVEDGSLDIGVIVLPANDKIFHTYTIIKEDMKLVTHPSHPMAGRDKVDLA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS----- 239
           +L + + I F        EDF       R + E   +  + N      Q+  +       
Sbjct: 185 DLKEESFIFF-------REDF---VLHSRILNECMNAGFRPNVIYETSQWDFISEMVAEN 234

Query: 240 -GIALLPDYIVKD-NPNLVRIM 259
            GI LLP+ I +D +P  V+++
Sbjct: 235 LGIGLLPERICRDLDPEKVKVI 256


>gi|254361728|ref|ZP_04977864.1| possible LysR family transcriptional regulator [Mannheimia
           haemolytica PHL213]
 gi|153093254|gb|EDN74260.1| possible LysR family transcriptional regulator [Mannheimia
           haemolytica PHL213]
          Length = 296

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 132/287 (45%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q  +S    S+ ++ LE  + ++L  R  R +T TE G  
Sbjct: 5   NAISLFCKVIETQSFTQAAQQAQISLPMASKLVAQLEEHLNVRLLQRTTRKITPTEAGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    + ++L+     +   +    GK+ ++  +D G   +   L +F+  YP++ + 
Sbjct: 65  YYQQCLPILNELKEADASVSNINSTLQGKITMSVPMDFGSRFIAPYLGKFMEDYPNLALH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D  +R+   +  SS++ +K+   H+   A+P YL    EP  ++ 
Sbjct: 125 IEFSDRRVDVIAEGFDLVLRIGS-LADSSIVAKKIADSHLVLVASPDYLARFGEPKGLEA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L + + + + +  P+            +P G+     +  N+  +++Q    G GI  +P
Sbjct: 184 LVERDCLLY-EYHPQWQFSQQGQKMQIKPQGK-----IYSNNGYALVQMAKAGLGIINIP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +++K    N  L+ IM  +      +   YP     + K++   +F
Sbjct: 238 KFLIKHELKNGELIPIMPFLTQEPLQISLLYPNRRYLSPKVRILIDF 284


>gi|126641428|ref|YP_001084412.1| putative transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 269

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 123/239 (51%), Gaps = 14/239 (5%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ S++S+ IS LE  +G++L  R  R   LT +G + +    ++ + L+  +  +  + 
Sbjct: 1   MTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQFYEQGIQILNGLDELEQSVTANH 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
           + P G++RI T+     + L   +  F   Y +I+++  L ++ I++     D AIR   
Sbjct: 61  I-PKGRIRIHTSFSYWTHFLLPCISLFNQRYQEIELEAHLSDEVINLVEQRIDVAIRT-G 118

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P++SS+L+ R L + +     +P Y++    P    EL +H L+     +    ++  WL
Sbjct: 119 PLKSSNLVARSLGSTYKQYVCSPLYIEKYGCPEHPDELHEHQLLD----VSYQRQNKTWL 174

Query: 209 ---ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261
              AT +  +   ++  L+VN   +I+Q  + G+GIA L ++ +++      LV+I+ED
Sbjct: 175 FKKATQEISLTPSKV--LKVNHGEAILQLALAGAGIAQLNEFQIRNALQQKQLVKILED 231


>gi|312882342|ref|ZP_07742085.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369988|gb|EFP97497.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 294

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 130/286 (45%), Gaps = 29/286 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GS   AA++L++  S++SR+++ LE  +   L  +  R L  TE G +
Sbjct: 9   DDLYLFYNVVEEGSLAAAAKKLNVPMSTMSRRLTALEKRLSTNLVQKQGRELVATEDGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +  +       LE+   +++  +   +G +++     L ++ +   +++FL+ YP + I+
Sbjct: 69  IFDLLRCGLEDLESNFAKVRADNQDVAGNIKLVIPHKLYRSRVSRIVEQFLIDYPKVSIE 128

Query: 126 LILD--------NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           L+L          +D+ IS D             +  ++ R L   H   +A+P Y+K  
Sbjct: 129 LVLSQEQSFPLTQRDLLISFDLTG----------AEDMVARPLFRAHHAFFASPEYIKKV 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +  +I  L + + ++   +    + + N  A V R   +P+   L +N  +++      
Sbjct: 179 GKVKTIDRLAELDWLSVDHVRDISICEGN--ALVGRIEIKPK---LVINDVMAVFDAAER 233

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY------PEAL 277
           G G+A LP   + +N NLVR++          Y  Y      P+AL
Sbjct: 234 GLGVASLPLMHMDENMNLVRVLPQYQRKPRQAYLIYQKRRYQPQAL 279


>gi|323530214|ref|YP_004232366.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323387216|gb|ADX59306.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 301

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 131/291 (45%), Gaps = 13/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR GS T AA ++ ++ S++SRQ++ LE  +G+ LF R  RG+ LT+ G+ 
Sbjct: 9   NPLHVFEAVARLGSLTSAAAEMCVTHSAVSRQLATLENYLGVSLFDRGPRGVKLTKVGAT 68

Query: 66  LHRVTSEVYHKL-ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++     +  +   T+  +     +P   LR++         L   L  F   +P+I +
Sbjct: 69  YYKQIGPAFASIVSATETIVGRMEGEP---LRLSVYTTFAAKWLMHRLHRFEQAHPNIPV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L      I+ S    D AI+           +R    + +    +P  LKN     SI 
Sbjct: 126 ELSTTVAKINFSEVQVDAAIQFGDGNWPGINCERLFDDV-IEPVCSPQVLKNGPPLESID 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVLGSGIA 242
           +L  H L+       +  + F+WL  V R   E  +S  +     S++ Y   + G G+ 
Sbjct: 185 DLANHRLLQSRY---RRNDWFDWLRAVGRSDLEGLVSRQRGGFQNSLLAYQAAIEGMGVV 241

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    ++ ++     LVR  +  +T     Y   P+  +++ K++AFR ++
Sbjct: 242 IGQTRLLANDIAAGVLVRPFDRPVTRELAYYLLVPDNRRHSRKVEAFRVWL 292


>gi|238894795|ref|YP_002919529.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547111|dbj|BAH63462.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 296

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 44/292 (15%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +++F  +  +GSF  AAE L + + ++++ +  LE E G++L  R  R L LT +G 
Sbjct: 4   FENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLTPEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSV--KP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           + +R +  +  + +    +L ES    +P  G+LR+   I   + L+  +L +F   +P+
Sbjct: 64  EFYRRSKPLLSQAD----DLLESFAPDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHPE 119

Query: 122 IQIQLILDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++I  +L + D+  D+  D  DC +R+   ++    + R L  + +   A+P YL     
Sbjct: 120 VEI--VLSSSDVRRDMLRDGLDCLLRVGD-LEDGDYVARSLGEVALTTCASPGYLARYGA 176

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-- 237
           P ++++L  H  +             NW+ +  R I   R    +    ++I    VL  
Sbjct: 177 PATLEDLQSHLAV-------------NWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDN 223

Query: 238 -----GSGIA----------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
                 +G+A           L  YI  D+  LV ++ D   P   +   YP
Sbjct: 224 SEVFTAAGLAGLGMLQGMRFFLQPYI--DSGQLVEVLPDFPAPRRPLSLLYP 273


>gi|254374008|ref|ZP_04989490.1| hypothetical protein FTDG_00167 [Francisella novicida GA99-3548]
 gi|151571728|gb|EDN37382.1| hypothetical protein FTDG_00167 [Francisella novicida GA99-3548]
          Length = 308

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 5/192 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++F      G+ + A  + +LS +SIS +I+ LE     KL  R  R +  T+ G KL
Sbjct: 6   ELKLFVAAINYGNLSAAGREFYLSPASISNKINALEEYYQTKLLIRTTRKIEPTKAGEKL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++  +LE  Q ++Q +     G ++I    DLG+ ++   L +F    P+IQ  +
Sbjct: 66  YTTAIKLLEQLENLQEDIQNNENTAEGVIKITIPFDLGKQIILPILDQFKEKNPNIQYDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  I  +    D AIR    +  S+ I +KLV  +    A+P YLK     ++I  +
Sbjct: 126 NLTDDVISYNQFPFDIAIRYGN-LPDSNFIAKKLVDNYRMLCASPEYLK----KMNISNI 180

Query: 187 DKHNLITFGDLI 198
           D  N++   D I
Sbjct: 181 DDINILQNCDFI 192


>gi|260425236|ref|ZP_05779216.1| transcriptional regulator [Citreicella sp. SE45]
 gi|260423176|gb|EEX16426.1| transcriptional regulator [Citreicella sp. SE45]
          Length = 300

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 120/261 (45%), Gaps = 23/261 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+F   +LR F  VA SG+ + AA+ L +SQS+++  I  LE ++G++LF RH RGL +T
Sbjct: 1   MAFTLRQLRYFLAVAESGTVSGAAQALAISQSAVTEAIRELEADLGVQLFERHPRGLDIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +  R  + +   +   ++ L +   +  GKL +  T  +   +L   L  F    P
Sbjct: 61  QKGHQFLRHATGILGSVSDARLSLSKDPDRLRGKLHVGVTSLVAGYVLSDILSRFRRANP 120

Query: 121 DIQIQLILDNKD----IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            +++  + D+ +    + I  +  D A+ +   ++    +Q +++    +    P+    
Sbjct: 121 GVEVTALEDSGEYLEHLLIGGEL-DAAVMVTTNMRDRMALQTEIIDTSPYQLWLPNG--- 176

Query: 177 CREPLSIQELDKHNLITFGDLI--PKCMEDFNWLATVDRPI-----GEPRISCLQVNSYL 229
                   EL     ++  DL+  P  M   + +    R +       PR+   +  S  
Sbjct: 177 -------HELSTRTSVSIEDLVDEPIIMLRVDEIEEATRRLLSAFGARPRV-AFRTRSVE 228

Query: 230 SIMQYCVLGSGIALLPDYIVK 250
           ++      G+GIA+LP+ + +
Sbjct: 229 AVRSLVATGAGIAILPELVYR 249


>gi|206580488|ref|YP_002238899.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569546|gb|ACI11322.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 304

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 4/189 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  +   GSF+ AA  L  S+   +  I  LE  +G +L  R  R +  T +GS 
Sbjct: 5   DTLTLFVRIVERGSFSAAAADLGFSRPVATAAIKALEASLGARLLQRTTRHVRPTAEGSL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   LE      + +    +G +R+    +L + LL   L +FL  YP + +Q
Sbjct: 65  YYQRCVAILAALEEAN---RSAGGSIAGIIRVDVAGNLARTLLLPALPQFLARYPAMTLQ 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    +D+D+  +  DC IR    +  S +I R L  +     A+P YL     P +I+ 
Sbjct: 122 IGESERDVDLVREGVDCVIRGGH-LPDSEMICRPLARLQEITCASPAYLARYGTPHTIEG 180

Query: 186 LDKHNLITF 194
           L  H +I F
Sbjct: 181 LTGHMMIGF 189


>gi|91790089|ref|YP_551041.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699314|gb|ABE46143.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 312

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 2/183 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   G F+ AA+ L ++ S++S+ I+ LE  +G +L  R  R L +T +G+  +
Sbjct: 12  MEAFVQVVERGGFSAAAQTLCMTPSAVSKLITRLEARLGTRLLNRSTRKLQITPEGTTFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             ++ V   ++  +     +S  P G++ +  ++  G +LL   +  F   +PDI + + 
Sbjct: 72  EHSTRVLADMDEAERS-AAASAAPRGRVSVNASMPTGHHLLLPLVPAFHARFPDILLDIS 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  + AD AIR    + SS L+ R+L         AP YL     P ++QEL 
Sbjct: 131 LTDRVVDLLDERADVAIRW-GALASSQLVARRLGDTAQVIVGAPAYLARHGTPQTMQELA 189

Query: 188 KHN 190
            H 
Sbjct: 190 AHQ 192


>gi|70734219|ref|YP_257859.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68348518|gb|AAY96124.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 303

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 2/191 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + LS +  S  +  +E  +G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDLSPAVASAALKRIEEHLGARLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       L+  +  L     + SG L+++   D G+NLL   L EF   +P + +
Sbjct: 64  GFLEYARAALSNLDEGRRLLASGQDQVSGVLQLSAPSDFGRNLLLPWLDEFQREHPKLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSL+   +   +     AAP YL    EP  +
Sbjct: 124 RLLLGDRIADLFRQPVDIALRYGEP-EDSSLVALPVAPDNRRVLCAAPRYLARYGEPRQL 182

Query: 184 QELDKHNLITF 194
           ++L +HN + +
Sbjct: 183 EQLAQHNCLLY 193


>gi|33152164|ref|NP_873517.1| DNA-binding transcriptional activator GcvA [Haemophilus ducreyi
           35000HP]
 gi|33148386|gb|AAP95906.1| glycine cleavage system transcriptional activator [Haemophilus
           ducreyi 35000HP]
          Length = 297

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 141/299 (47%), Gaps = 34/299 (11%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F   AR  +FT AA+ L ++Q+++S QI  LE  +G+ LFYR  R L LTE G +
Sbjct: 9   NALKAFESAARHLNFTKAADDLFVTQAAVSHQIKLLEDFLGVPLFYRRNRLLELTEIGRQ 68

Query: 66  LHRVTSEVYHK--LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  ++ +  L T +I+L+ S       L I+TT   G + L   L EF   YPDI+
Sbjct: 69  YFEEIQPLFQQIALSTEKIKLKNS----RQILSISTTPSFGMHWLVPRLNEFHHKYPDIE 124

Query: 124 IQLI-------LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           ++L+       L  KDID+++ Y        + +++  L+Q +++ +     A+  YL+ 
Sbjct: 125 VRLVTAAQDEGLLGKDIDVAIYYGSGN---WQNLEAVKLVQARIMIL-----ASSEYLQ- 175

Query: 177 CREPLSIQE-LDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            R P++  E L   NLI        K M ++  L  VD   G P  S    N+ ++I Q 
Sbjct: 176 -RNPMTKPEDLTGKNLIHVCSHTKWKQMVEYLQLTNVDTESG-PMYS----NTSMAI-QA 228

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFI 290
                G+ +    + +   N   ++E   T  +     Y  YP  + +  K++ F  +I
Sbjct: 229 AKHSQGVVVANCILAQAEINEGSVIEPFATEVYDEKAFYVVYPTQMSDIVKVQHFVEWI 287


>gi|270262947|ref|ZP_06191218.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043631|gb|EFA16724.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 310

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 73/126 (57%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M++   +LRVF  +AR  SF+ A E + L+QS++S  +  LE E+G++L  R  R + LT
Sbjct: 5   MNYSIKQLRVFVAIARHRSFSRAGEAIGLTQSAVSHSVKELEAEIGVRLLDRTTREVVLT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L      +  +L+T+ ++ +   V+ SG +R+A++  +  +L+   +      YP
Sbjct: 65  DAGQRLANRVERLLDELQTSLLDARSFGVQRSGTVRVASSQTISAHLMPQCIAAGEQQYP 124

Query: 121 DIQIQL 126
           DI+I L
Sbjct: 125 DIRIML 130


>gi|260567034|ref|ZP_05837504.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|261754358|ref|ZP_05998067.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|260156552|gb|EEW91632.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|261744111|gb|EEY32037.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
          Length = 294

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 3/181 (1%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V   G+ + A      S + +S +I  LE  +G++LF R  R LT TE G   +    ++
Sbjct: 3   VVELGNLSAAGRDQRASPAVVSNRIKELEKHLGVRLFNRTTRKLTPTEHGRVFYDGALKI 62

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI+++L L + ++
Sbjct: 63  LEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEVRLRLSDHEV 122

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL--DKHNL 191
           DI  +  D A +L   +++S+L  R ++       AAP YL+    P S + L  D+H+ 
Sbjct: 123 DIMSEGVDVAFKL-GVLENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPEALLSDRHHC 181

Query: 192 I 192
           +
Sbjct: 182 L 182


>gi|218529252|ref|YP_002420068.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218521555|gb|ACK82140.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 307

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 116/260 (44%), Gaps = 23/260 (8%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  +  +GS + A  Q  LS  ++SR+++ LE E+G++L +R  R + LT
Sbjct: 1   MPMNLLDVALFCAIVTTGSLSAAGRQAGLSPMAVSRRLAALEHELGVRLIHRTTRSVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKP--------SGKLRIATTIDLGQNLLQGNL 112
             G        E +  L  T +E QE++           SG LR+     +G+ L+   +
Sbjct: 61  ADG--------ETFLPLAQTMLEAQEAATAAFSEQHEGLSGVLRVTAPHRIGRALVVPLV 112

Query: 113 KEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
              +   P +++ L   +  +DI     D AIR+   +Q+S L+   +        AA  
Sbjct: 113 VRLMAENPRLKVDLTFSDGIVDIVAGGIDVAIRVAT-LQASELVAVHVADNPRILCAATA 171

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           YL     P  + +LD H  +T        M+ + +      PI +     L  +S  ++ 
Sbjct: 172 YLAAHGCPERLADLDAHACLTL-----HAMDAWTF-RQAGHPIAKRIKGRLAASSVDTVH 225

Query: 233 QYCVLGSGIALLPDYIVKDN 252
             CV G+G+ALL  + V+ +
Sbjct: 226 AACVAGAGLALLTYWDVEQD 245


>gi|167617742|ref|ZP_02386373.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 300

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 142/301 (47%), Gaps = 13/301 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + ++L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQNELLAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P +      P 
Sbjct: 121 VLDVVFENRIEDLMRDEVDIAVRVMSEPPQ--NLVARDMGAVRYVACASPGFAATHGMPT 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSG 240
            + +L    +IT   ++ + +    +L      +  EP    L   ++L + Q  + G G
Sbjct: 179 ELDQLFDAPVITSA-VVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQAILSGLG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIFLKAR 295
           + ++PDY+V D+     ++  +     ++     Y  Y     +T     F +F+  +AR
Sbjct: 235 VGIVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFVLDEAR 294

Query: 296 D 296
           +
Sbjct: 295 N 295


>gi|297579908|ref|ZP_06941835.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535554|gb|EFH74388.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 307

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 135/312 (43%), Gaps = 49/312 (15%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT  G +  
Sbjct: 18  MRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTAAGEEAL 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P +   ++
Sbjct: 78  QRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQVHFDVL 137

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185
             ++   +  +  D A+R  ++P    +LI R+L+ + M   A   YL     P+ + Q+
Sbjct: 138 ASDRFSQLVDERVDIALRFTQQP--DENLIARRLLEVGMVVCATEEYLAQ-HAPIELPQD 194

Query: 186 LDKHNLITF-----GDLIPKCMEDF----------NWLATVDRPI----GEPRISCLQVN 226
           L  HN +        D + K  E F          N + T+ R      G  R+ C   N
Sbjct: 195 LAHHNCLVHISGNKWDFV-KNNEQFSVLVNGNIRANDMGTLCRAALNHKGLIRLPCDLAN 253

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             L        G   ALLPDY +               PS +++  Y   L  + +    
Sbjct: 254 PLLQA------GQLQALLPDYYL---------------PSSSIWAVY---LSRSYQTPLV 289

Query: 287 RNFIFLKARDWK 298
           R FI   A  W+
Sbjct: 290 RQFIDFLAERWQ 301


>gi|86358793|ref|YP_470685.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282895|gb|ABC91958.1| transcriptional regulator protein (activator), LysR family
           [Rhizobium etli CFN 42]
          Length = 300

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 128/288 (44%), Gaps = 12/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L ++Q+++S+Q+ GLE  +G+ LF R  RGL +T +G  
Sbjct: 9   NGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKGLEKRLGVALFQRLPRGLKITAEGEA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +  + ++ TT   ++   V+    L +  T  +G   L   L +F   +P I ++
Sbjct: 69  LLPTVTASFDQMATTLDRIEAGQVRELMFLGVVGTFAVG--WLLPRLADFQQRHPFIDLR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +N  +D + +  D AIR        +  QR L    +     P    + R P  +  
Sbjct: 127 ISTNNNRVDPAAEGLDFAIRFGSGSWHRTDAQR-LFEAPLSPLCIPKLADDLRSPADLAG 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +    L ++     +  E   W A    P      + +  +S + +M   + G G+AL P
Sbjct: 186 VTL--LRSY-----RTDEWSTWFAAAGVPAAPQVNAGIVFDSSVGMMDAALQGFGVALAP 238

Query: 246 DYIVKDNPNLVRIMEDVITP-SFTVYFCYP-EALKNTGKLKAFRNFIF 291
             +   +     I++   T  S   Y+    ++   T  ++AF ++IF
Sbjct: 239 PSMFSRHLCSGAIVQPFATAISLGSYWLTRLQSRPVTPAMRAFSDWIF 286


>gi|299068231|emb|CBJ39450.1| transcriptional regulator, LysR-family [Ralstonia solanacearum
           CMR15]
          Length = 310

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 6/282 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA + SF  AA QL ++ S ++ ++  LE  +   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVAETRSFAEAARQLGVTNSVVTHRVQQLERFIEAPLFHRSTRHVRLSEVGETYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +     L     +++     P+GKLRI        +     L  F   YPDIQ+ ++
Sbjct: 67  KQCAHAVGMLSDLTDQMRGLRATPAGKLRIRMLPGYALHHFAQPLARFGAQYPDIQLDVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+  +D   +  D   ++  PI + SLI+++L  +     A P Y++    P    +L 
Sbjct: 127 VDDGVVDPIAEGFDVVFQIFPPI-NDSLIEKRLFILRRLFCATPDYVEEYGMPQQPADLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H L  +     +    F+    V   +  P    ++ NS   +  Y + G+GIA LP  
Sbjct: 186 RHALALYSGYPTRKHWVFSRNGEVAAELDLP--EQVRSNSVHLLRDYALTGAGIACLPTL 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  D+     LV ++ D     F     YP   +   K+ A 
Sbjct: 244 VASDDLLAGRLVPVLPDYDLAPFHFSAVYPATQRQAVKVCAL 285


>gi|269962992|ref|ZP_06177329.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832235|gb|EEZ86357.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 293

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 129/274 (47%), Gaps = 11/274 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F  V   GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT  G  
Sbjct: 4   DDLKLFIKVVELGSFTAAANALDLPRANVSRRIGELEQSLGAQLFHRTTRSLSLTNNGEA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +    L++   ++   + +  G++++    +  + L++  L  F   YP +++ 
Sbjct: 64  YYENLQKALTMLDSANEQVSNDTNEVRGRIKLGLLPETDE-LVRPILFNFHDKYPHVELD 122

Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++N   D+     D A      +  S ++ RKL+T+     A+P+YL+    P +++
Sbjct: 123 IRNINNGFSDMFQQGLDIAFH-GGALFDSDIVARKLLTLDRCLVASPNYLETHGMPENLE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  + F    P    D  W          P++     N+   I    +L  GI  +
Sbjct: 182 QLKEHQCVCFR--WPNGEVDNVWHFQEQSVQLHPKLIS---NNIGFIKNATILDRGITFM 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           P  +VK   ++ +LV+++        + +  YP+
Sbjct: 237 PKLLVKRELESGSLVQLLSQYSVTEESGWLLYPQ 270


>gi|261492035|ref|ZP_05988610.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261495012|ref|ZP_05991480.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261309328|gb|EEY10563.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261312318|gb|EEY13446.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 296

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 131/287 (45%), Gaps = 10/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V  + SFT AA+Q  +S    S+ ++ LE  + ++L  R  R +T TE G  
Sbjct: 5   NAISLFCKVIETQSFTQAAQQAQISLPMASKLVAQLEEHLNVRLLQRTTRKITPTEAGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    + ++L+     +   +    GK+ ++  +D G   +   L +F+  YP++ + 
Sbjct: 65  YYQQCLPILNELKEADASVSNINSTLQGKITMSVPMDFGSRFIAPYLGKFMEDYPNLALH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  D  +R+   +  SS++ +K+   H+   A+P YL    EP  ++ 
Sbjct: 125 IEFSDRRVDVIAEGFDLVLRIGS-LADSSIVAKKIADSHLVLVASPDYLARFGEPKGLEA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
                L+  G L+ +    + +     +   +P+      N Y +++Q    G GI  +P
Sbjct: 184 -----LVERGCLLYEYHPQWQFSQQGQKMQIKPQGKIYSNNGY-ALVQMAKAGLGIINIP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +++K    N  L+ IM  +      +   YP     + K++   +F
Sbjct: 238 KFLIKHELKNGELIPIMPFLTQEPLQISLLYPNRRYLSPKVRILIDF 284


>gi|261252077|ref|ZP_05944650.1| putative transcriptional regulator LysR family [Vibrio orientalis
           CIP 102891]
 gi|260935468|gb|EEX91457.1| putative transcriptional regulator LysR family [Vibrio orientalis
           CIP 102891]
          Length = 310

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 130/294 (44%), Gaps = 19/294 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           FY  A+ GSF  AA++L ++ ++IS+Q+  LE  +G +LF R  R +TLT +G  L    
Sbjct: 14  FYTAAKLGSFKLAAQELFVTAAAISQQVRQLEDFLGAELFLRQHRKVTLTMEGEILFDQA 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
              +  L     ++ +    PS +L I+T     Q+ L   +  F    PD+++ +   +
Sbjct: 74  QRGFEHLHRGIRQINQDP-NPS-QLSISTLPSFAQHWLVPRIGHFRQQNPDLELMIEPTS 131

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D      D  IR   P   +++  + L+   ++    P Y    +E  SI EL    
Sbjct: 132 ELADFQNSNLDVCIRY-GPGDYANIASQLLIEELLYPVCHPIY----QEQHSIYELSD-- 184

Query: 191 LITFGDLIPKCMEDFN---WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            +T  DLI     D +   WL  V     +P    L+ N    +++  +   G+AL    
Sbjct: 185 -LTGADLIEDYWRDLDWGIWLNNVGHKASKP---TLKYNGSHFVLEGALAVQGVALAKHT 240

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + +   +   LVRI        +  + C P A     K+K F  +IF +A +++
Sbjct: 241 LAQRYIEEGKLVRIGNLAQRTDYNYFLCAPRAYFKREKIKRFCEWIFAQAEEYR 294


>gi|160896430|ref|YP_001562012.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362014|gb|ABX33627.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 324

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 111/263 (42%), Gaps = 21/263 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+ + GSFT AA +L +S++++S++++ LE   G+ L  R  R + LTE G 
Sbjct: 14  WSHLHWLVVLEQQGSFTSAAARLGVSKAAMSQRVAELERAAGVALVTRTTRSVRLTEAGQ 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T   +  +  +   +++ + +P G LR+   +   +  L   L  FL  +P I++
Sbjct: 74  RLVDETRGAFEHIADSFAGVRDLAAEPRGLLRVTAPVAFSRQQLMPRLPAFLRAHPQIRL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +    ++M+  D A+R        + +   L        A+  YL     P + Q
Sbjct: 134 ELDLSDHLRSLAMEGFDIAVR-HASTPPETHVAWALAPTRSLLVASTDYLAAHGTPATPQ 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNW---------------LATVDRPIGEPRISCLQVNSYL 229
           +L  H  + +    P+      W                A   R +  P       N+  
Sbjct: 193 DLAAHQCLHY----PRTQGAMAWSFVPAYAGAYAGADASADAVRTV-VPVAGGFAANNSE 247

Query: 230 SIMQYCVLGSGIALLPDYIVKDN 252
            +    + G GIAL+PD+  +  
Sbjct: 248 MLRDAAMAGLGIALVPDFSAQSG 270


>gi|20094918|ref|NP_614765.1| LysR family transcriptional regulator [Methanopyrus kandleri AV19]
 gi|19888157|gb|AAM02695.1| Transcriptional regulator of the LysR family [Methanopyrus kandleri
           AV19]
          Length = 304

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
            R F  V R  SF+ AAE L ++Q ++S QI+ LE     +LF R   G+ LTE+G    
Sbjct: 9   FRTFREVVRQKSFSKAAEALGITQGTVSNQIASLERFFDARLFVRTPEGVELTEEGEIAL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL- 126
                V   +E  + ++   S +PSGK+R++T+   G  LL G++KEF   YP + + + 
Sbjct: 69  EAIETVLDAVERAKDKIAAVSKEPSGKVRVSTSTVPGGYLLPGSVKEFRSEYPKVDVIIR 128

Query: 127 ILDNK---------DIDISMDYADCAIRLRKPIQSSSLIQRKLVTI 163
           + D++         D D+++   D  +  RK ++   +   +LV I
Sbjct: 129 VCDSREATEHVLSGDADVAIVGTDAFV-TRKSVEVVPIASEELVVI 173


>gi|84500358|ref|ZP_00998607.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84391311|gb|EAQ03643.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 297

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 1/198 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AA+ L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAFQVARLGTVSGAADVLGVHHATVIRHIDALEGRLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       ++      SG+L + TTI      L   +  F   YP++ 
Sbjct: 63  QDLLRVAQATDDQFSQLAGRIKGRGSDVSGEL-VVTTIGGISEFLVPVMARFQKDYPEVI 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +   +   +    A  AIR   P      + +  + +    YA+  Y+     P   
Sbjct: 122 LRYLTSARLFRLEYGEAHVAIRAGSPPSQPDNVVQPFMHLQFGIYASRDYIARHGTPSIP 181

Query: 184 QELDKHNLITFGDLIPKC 201
             ++ H  +   D   + 
Sbjct: 182 DAMEGHRFVGQDDAASRA 199


>gi|323528755|ref|YP_004230907.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385757|gb|ADX57847.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 296

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 122/286 (42%), Gaps = 15/286 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA   +FT AAE LH+SQ ++S+QI  LE  +  +L  R  R + LT+ G+   
Sbjct: 6   IRYFMAVAEHRNFTRAAEALHVSQPTLSQQIRQLEDTLRTQLLDRSGRNVQLTDAGAAWM 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI--- 124
           R        L+     + +      G LR+A T      L+   +  F  L+P I I   
Sbjct: 66  RYAKLALQDLDAGTRAIHDVGELSRGNLRLAVTPTFTAYLVGPVIDRFYGLHPGIAINIQ 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSI 183
           ++  D  +  ++ D  D  I   +P+ ++ +    L    +       H     R+PLS 
Sbjct: 126 EITQDQIEAQLADDRLDAGIAF-EPVHTAEIESEPLFRETLSLVVGGGHARAKRRKPLSA 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSG 240
           Q+     L     L+ K      +   +D    + RI     ++V+S  +I++    G  
Sbjct: 185 QDFANERLA----LLNKTFATRRY---IDEYCTQNRIRPQVAIEVSSISAIVEIVRRGQL 237

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             +LPD I +++  L R++ D   P+ TV     +    T   KAF
Sbjct: 238 ATVLPDGIAREHTELHRVLLDPPLPARTVVLLQRKDAYRTAASKAF 283


>gi|148975331|ref|ZP_01812255.1| putative transcriptional regulator, LysR family protein
           [Vibrionales bacterium SWAT-3]
 gi|145965255|gb|EDK30505.1| putative transcriptional regulator, LysR family protein
           [Vibrionales bacterium SWAT-3]
          Length = 310

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  + +      A  +L LS ++++ ++  LE   G+KL  R  R ++LT+ G 
Sbjct: 4   FSDMAMFVSIVKHQGLAAAGRELGLSPATMTARLQALEERYGVKLLNRSTRHVSLTDSGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+   E+   +   +  +Q    +  G L+IA   D+G+  +   L EF   YPD+  
Sbjct: 64  LYHKACLEILDNVSEAENLIQNGVKEVKGPLKIAAPKDIGKQYILPILSEFCQQYPDVIP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L++   +I+    D  IR  + +  SSLI R+L        A+P YL     PL+ Q
Sbjct: 124 YLYLNDNLSNIAESGMDVVIRYGELVD-SSLISRRLSPSRRVLCASPEYLAKHGTPLTPQ 182

Query: 185 ELDKHNLITF 194
           +L  H+ +  
Sbjct: 183 DLADHDCLAM 192


>gi|91784408|ref|YP_559614.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91688362|gb|ABE31562.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 315

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 125/253 (49%), Gaps = 8/253 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + L +   +  +G+ + AA +L +S++++S  ++ LE  +G++L  R  R +  TE
Sbjct: 13  AVDVNSLTLLVEILDAGNLSEAARRLKMSRANVSYHLNQLERSIGLQLVRRTTRRVEPTE 72

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L+     + + L   +  +        G++R++     GQ ++   L  F  LYP 
Sbjct: 73  IGLQLYEHGRAIQNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMSDWLIAFKRLYPG 132

Query: 122 IQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P + +    P
Sbjct: 133 IVLDVMFENRVEDLMRDEVDIAVRVMSEPPQ--NLVARDMGPVRYVACASPAFAQTHGMP 190

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGS 239
             + +L    LIT   ++ + +    +L      +  EP    L   ++L + Q  + G 
Sbjct: 191 RQLDDLRTAPLITSA-VVGRQLRVAAYLRDERHEVLLEP---TLISENFLFLRQAVLAGL 246

Query: 240 GIALLPDYIVKDN 252
           G+ L+PDY+V+D+
Sbjct: 247 GVGLVPDYVVQDD 259


>gi|10954911|ref|NP_053331.1| hypothetical protein pTi-SAKURA_p093 [Agrobacterium tumefaciens]
 gi|6498264|dbj|BAA87716.1| tiorf91 [Agrobacterium tumefaciens]
          Length = 282

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR F  +A +GS + AA  L +  ++++R+I+ LE  +G+ L  R  R  TLT +
Sbjct: 1   MNWDDLRHFSALASAGSLSAAARMLAVEHATVARRIASLEDSLGVALVDRRGRRWTLTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++  +  ++  +    Q     +  + SG + ++    L    L   L E    +P +
Sbjct: 61  GERIAAIADKMEAEARAVQRAADGARSELSGTVTVSAPPALAAQRLTAPLVELQNRHPHL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I++I +++   +    AD AIRL +P +   L   +L  I    YA+  YL    E   
Sbjct: 121 IIRIIGESRTSSLDRGEADIAIRLSRP-EDGDLTITRLGKIDFQLYASRDYLAATTE--- 176

Query: 183 IQELDKHNLITFGDLIPK-----CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV- 236
               D    + +   + +      +EDF             R      +S L I Q  V 
Sbjct: 177 ----DNWRFVGYDGALARPPQQAAIEDF----------AAGRSFSFYASS-LEIQQAAVR 221

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            G+GIA LPD++   +  LV +++ V   S  ++      LK +  +KA
Sbjct: 222 AGAGIAALPDFMGMSDEKLVPVLQGVGLISRDIWLVVHSDLKRSAPVKA 270


>gi|330445863|ref|ZP_08309515.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490054|dbj|GAA04012.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 294

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 131/263 (49%), Gaps = 19/263 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F V+   GS+T A+ +L ++ S++S+QI+ LE  + +KL  R  R L ++E G++++
Sbjct: 4   LATFIVIVDEGSYTAASRKLGVTPSALSKQIARLEKTLSVKLLERTTRKLVISESGNRIY 63

Query: 68  -RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            + T  +    E  +I   E ++ PSG + IA        +LQ  +K FL  YP++ ++L
Sbjct: 64  NQCTQMIDAAKEAIEISSSEHTI-PSGTVTIAAPKAFMSIVLQPLVKPFLTQYPEVNLKL 122

Query: 127 ILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DIDI  D  D   RL  +P  S  L+ +K+   ++   A+P Y+     P   +E
Sbjct: 123 KACDGDIDIIADGIDIVFRLTERP--SEGLVLKKIGKANLTLCASPEYIAKRGMPTHPRE 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS----GI 241
           L +H+ +  G+     + DF+         GE     +     ++  Q  + G     GI
Sbjct: 181 LKQHDCLYLGETNTDHIWDFD-------KDGEQITVAVTGRYAVNHSQMRLKGVKDNLGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMED 261
            L PD+++K +    N+V+++ D
Sbjct: 234 GLFPDFVIKHDLIAENVVQVLPD 256


>gi|302187074|ref|ZP_07263747.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 307

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 128/306 (41%), Gaps = 39/306 (12%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AA +L L+Q ++ RQI GLE  +G++LF R  RG+ LTE G    R  
Sbjct: 14  FEAAARHESFTKAANELSLTQGAVCRQIGGLEEFLGVELFRRSRRGVKLTEAGLSYSRRV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL---- 126
           ++    +E   + +     + +  + +A     G   L   LK+F   +PD+ + L    
Sbjct: 74  AQQLDAVERDTLSVM--GQQGANAIELAVVPTFGTQWLLPRLKDFQHKHPDVTVHLTNRT 131

Query: 127 ---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +  + D D ++ + D           S     +L++ +     +P  L+ C + L  
Sbjct: 132 RPFLFADTDFDAAIYFGDA--------DWSGTHSHRLMSENSMPVCSPSLLEGC-DSLEA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLA-------TVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +EL +  L+       +    + W          V R +  PR     +     + Q  +
Sbjct: 183 RELAELPLLQ------QTTRPYAWRQWFNAQDLDVARDMTGPRYELFSM-----LAQAAM 231

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              GIAL+P ++++       LV      +  S   +   PE    +  L AFR+++  +
Sbjct: 232 HDMGIALIPPFLIQRELQEKRLVIANTRSLPGSKAYHLMIPERKVESASLTAFRDWLVEQ 291

Query: 294 ARDWKF 299
           AR ++ 
Sbjct: 292 ARTYQL 297


>gi|160898765|ref|YP_001564347.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364349|gb|ABX35962.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 299

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 128/289 (44%), Gaps = 15/289 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F  V  +G F  AA +L +S S ++R +S LE  +G++L  R  R + +TE G+
Sbjct: 4   FQSMTAFLAVVDTGGFASAARRLKVSPSVVTRAVSDLEERLGVRLLTRTTRFVRVTEAGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +LE        +   P G+L +   ++ G+  +   + ++L  +P++ +
Sbjct: 64  AYADSCRRILAELEEADEHAASAHAAPRGRLTLTAPVNFGRMHVLPVVHDYLGRFPEVDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
                ++ + +  +  D A+R+   +  SSL   ++ ++     A+P YL +   P   +
Sbjct: 124 NCWFVDRVVSLVDEGVDVAVRIGD-LPDSSLQAIRVGSVRQVLCASPAYLASHGVPQRPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVL-GSG 240
           EL +H  IT   L      ++ +L   D+ +    +PR+  +   +       C L G G
Sbjct: 183 ELAQHTTITASGL--TSTPEWRFLEG-DKALAVRLQPRLMSMTNEAAAD----CALAGQG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  LP Y +     +  L  ++E    P   ++  + E      +++AF
Sbjct: 236 ITRLPLYQIAKPVQDGTLRLVLEPFERPPLPIHVVHREGRHAAHRVRAF 284


>gi|17549812|ref|NP_523152.1| transcription regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17432067|emb|CAD18744.1| probable transcription regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 296

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 122/295 (41%), Gaps = 16/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   AR GSFT AA++L L+QS++ RQ++ LE  +G+ LF R  R L LT+ G +  
Sbjct: 11  LQAFEASARLGSFTRAADELALTQSAVGRQVAALERRLGVPLFTRVRRRLVLTDAGREY- 69

Query: 68  RVTSEVYHKLETTQIELQE-SSVKPSGK-LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
              + +   LE  Q + Q  S+ +  G  L IA       + L   L EF  L+PDI + 
Sbjct: 70  --AARIRRHLEQIQRDTQALSAGRQMGYILEIAVVPTFATHWLIPRLAEFARLHPDITVN 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCREPLSI 183
           L              D AI         +          M    +P YL+  +       
Sbjct: 128 LASRTLAFSFQECAYDAAIYFGDQFWPDTKGAFLFPEGPMVPVCSPAYLEAHDVSSEAGF 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +    +L T  +   +      W  TV    G PR        +  ++   V G G+ L
Sbjct: 188 AQCRHLHLSTRANAWREWYTAQGWDYTVGASRG-PRYEL-----HTMVVAAAVAGLGMGL 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +P  ++    +   LV  +E  +  +   YF YPE ++ +  L AF  ++   AR
Sbjct: 242 VPRLLIGTELETGQLVIPVERSLAVTQGYYFAYPERVRPSDALGAFERWMLSVAR 296


>gi|148545977|ref|YP_001266079.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148510035|gb|ABQ76895.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 305

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 121/304 (39%), Gaps = 42/304 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +  R F + A++ SF  AAE LH++  ++SRQI  LE  +G++LF R  R + LT  G  
Sbjct: 7   NAFRYFDIAAQTESFVRAAEHLHVTHGAVSRQIRLLEESLGVELFERRNRAIFLTPAGRA 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           LH  T  ++ +LE     LQ         L    TI +    L   L  F   +PD+Q+ 
Sbjct: 67  LHGTTQAIFEQLEGAVQRLQHQVRDNVLVLSCEPTIAM--RWLIPRLPRFHATHPDLQLH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+     +D +    D AIR      ++ L  +K+            ++     P +   
Sbjct: 125 LVAAGGPLDFARSGVDMAIRRDDFHWNNQLFNQKVCD---------EWIGPVCHPAASAR 175

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISCLQVNS---------YLSIMQ 233
           LD   L                L +  RP   P   R+S  Q            YLSI Q
Sbjct: 176 LDGQRL----------------LHSTTRPAAWPTWLRLSGQQARHCERSDYEHFYLSI-Q 218

Query: 234 YCVLGSGIALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
               G G+A+    +V D  +   ++     +      +   P+ L ++GK + F  ++ 
Sbjct: 219 AANAGLGLAMASALMVCDELDSGQLQAPYGFVRDGSAYHLLSPQPLADSGKCQRFAEWLM 278

Query: 292 LKAR 295
            + R
Sbjct: 279 DECR 282


>gi|209515936|ref|ZP_03264797.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503594|gb|EEA03589.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 308

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 125/274 (45%), Gaps = 14/274 (5%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L 
Sbjct: 28  ELGLTAAAVSKRLTQMEQRAGVVLVNRTTRRMMLTPEGELYLEHARRILDEIDELAELLG 87

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
            +   P G LR+  T+  G++ +   +  F+  YP + +QL L      ++ D  D  IR
Sbjct: 88  SAKKTPKGLLRVNATLGFGRSHIGPAISRFVARYPQVSVQLQLSVTPPPLTDDSFDVCIR 147

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
             +P   + ++ R+L        AAP YL     PL+  +L +HN I     I +  + +
Sbjct: 148 FGEP-PDTRVVARRLAPNRRLLCAAPSYLAAHGMPLTAHDLTRHNCIG----IRQGDQAY 202

Query: 206 N-WLATVDRPIGEP----RI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLV 256
             W  T  R         RI   L  N     +++ + G GI +  ++ ++    + +LV
Sbjct: 203 GVWRLTSGRGAARKTEAVRIKGTLTTNDGEIAVKWALEGHGILMRAEWDIRQYLADGSLV 262

Query: 257 RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++ D  TP+  ++  Y    + + +++AF  FI
Sbjct: 263 QLLPDHDTPNADIFAVYSPRHQMSNRIRAFVEFI 296


>gi|17547254|ref|NP_520656.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17429556|emb|CAD16242.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 323

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 114/251 (45%), Gaps = 4/251 (1%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
           V+A + SFT AA++L +S++++S++++ LE   G+ L  R  R + LTE G  L   T +
Sbjct: 23  VLATTNSFTAAAQRLGISKAAMSQRVADLEKAAGVPLVRRTTRSVRLTEAGQTLVDSTRD 82

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
            Y  +      +++ + +P G +R+   + LG+  +   L  FL   P ++I+L L ++ 
Sbjct: 83  AYETIAVHFARVKDLAGEPRGLVRVTVPVALGRQQIVPLLPAFLQRCPGVRIELDLSDRL 142

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
             ++ +  D AIR        + +   L        A+  YL     P   Q L  H+ +
Sbjct: 143 HSLTQEGFDLAIR-HVTAAPETHVAWTLCRTQAVLVASRDYLARRGTPEHPQALVDHDCL 201

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK-- 250
            +          F         +  P   C   N+  ++ +  + G GIALLPD+  +  
Sbjct: 202 YYLRGNEPAAWSFEPRGRKRGRVSVPIRGCFAANNSEAMREAALGGLGIALLPDFSAQHD 261

Query: 251 -DNPNLVRIME 260
            D   LV ++E
Sbjct: 262 IDAGRLVPVLE 272


>gi|13472243|ref|NP_103810.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022988|dbj|BAB49596.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 298

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 115/276 (41%), Gaps = 15/276 (5%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
            F  AA+ L LS S++S  +  LE  +G++L  R  R +  TE G +L      +   ++
Sbjct: 21  GFRKAADDLGLSPSTLSHMMRTLERRMGVRLLNRTTRSVAPTEAGERLVSRLRPLLSDID 80

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL-KEFLLLYPDIQIQLILDNKDIDISM 137
               E+ +     SG LRI T+ ++G  LL G++   FL  YP + + L+ + + +DI  
Sbjct: 81  AALAEVDDFRGLASGTLRINTS-EIGARLLLGSVVPAFLQRYPQVALDLVTEGRLVDIVA 139

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--- 194
           +  D  IRL + +    +  R        A A+P YL     P    +L     I F   
Sbjct: 140 EGFDAGIRLGEAVPQDMVAVRFGGPTRFIAVASPAYLAGRTVPRVPDDLRDQACIRFRLP 199

Query: 195 -GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK--- 250
            G       E       +D P        L +++   + +    G GIA + D   K   
Sbjct: 200 SGKPYRWEFEKHGQEIAIDVP------GALTLDNMELMAEAAAGGMGIAYISDKSAKPYL 253

Query: 251 DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           D   LV ++ED   P   ++  YP        L+AF
Sbjct: 254 DRGALVGVLEDWCPPIPGLFLYYPGHRLVPPALRAF 289


>gi|254254312|ref|ZP_04947629.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124898957|gb|EAY70800.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 290

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 3/145 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FD D+LR F  VA +GS T AA  LHLSQS++S Q+  LE+  G+ LF R  RG+  T 
Sbjct: 3   GFDLDQLRTFAAVADAGSLTAAAPLLHLSQSTVSEQVRKLESRAGVPLFVRSKRGVEPTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L +    +    E    EL+  ++K  G+LR+A T     + + G L      YP 
Sbjct: 63  AGARLLQHARRIVALNEAAFDELRGQAIK--GELRVAITDYYRTHEVAGMLARLRECYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRL 146
           + +  +   K  DI   +A   I L
Sbjct: 121 LSLH-VSAMKSADIEAAHAKGQIDL 144


>gi|319791570|ref|YP_004153210.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594033|gb|ADU35099.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 306

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 141/299 (47%), Gaps = 11/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  +G+ + AA +L +S++++S  ++ LE  VG +L  R  R    TE 
Sbjct: 1   MDLQSLTLLVEILDAGNLSAAARRLKMSRANVSYHLNQLERSVGAQLVRRTTRRAEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++    +  +L   +  +        G++R++     GQ ++   L +F   YP I
Sbjct: 61  GLRLYQHGVAIQTELLAARESVTTLGEGLQGRVRLSVPSGYGQLVMADWLIDFKRQYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+  P    +L+ R L  +   A A+  Y +    P+ 
Sbjct: 121 VLDVVFENRIEDLLRDEVDIAVRV-IPEPPQNLVARDLGPVRYVACASRDYAEKHPLPVQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + EL    ++T   +I + +    +     R  I EP    L   ++L + Q  + G GI
Sbjct: 180 LDELQGAPVVTAA-VIGRQLRVSAYQGETRREVILEP---TLISENFLFLRQAILAGLGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L+PDY+V+++     ++  ++D     F   ++  Y    ++T  ++ F +FI  +AR
Sbjct: 236 GLVPDYVVQEDVRKGEVLTTLDDWRLSIFGTQMFMLYMPNRQHTRAIRTFIDFILERAR 294


>gi|188533935|ref|YP_001907732.1| Putative transcriptional regulator, LysR [Erwinia tasmaniensis
           Et1/99]
 gi|188028977|emb|CAO96843.1| Putative transcriptional regulator, LysR [Erwinia tasmaniensis
           Et1/99]
          Length = 309

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 91/187 (48%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +++ +F +V   GS   AA +L +S S++S+ +  LE  VG+ L +R  R L L+E G+ 
Sbjct: 5   NRMAIFAIVVNEGSLAGAARRLGMSPSAVSQHLRALEQSVGVPLLHRSTRKLALSEAGAA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  + +  + +L E     +G+LRI++T  +G   L   +   L  +P ++++
Sbjct: 65  FFPGCKAMLDQAQEAEKQLAEMRDTLTGELRISSTPGIGGQPLCSAMSPMLQQHPGLKLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  +  +D+     D A+R  + +  +++I   L    M   AAP YL     P +   
Sbjct: 125 ILATDNVLDMIEHRIDIALRFSRQLSDANIIAHPLAEWPMVVCAAPGYLSRYGVPETATA 184

Query: 186 LDKHNLI 192
           L  H  +
Sbjct: 185 LISHRWV 191


>gi|168178019|ref|ZP_02612683.1| transcriptional regulator, LysR family [Clostridium botulinum NCTC
           2916]
 gi|182670752|gb|EDT82726.1| transcriptional regulator, LysR family [Clostridium botulinum NCTC
           2916]
          Length = 291

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 138/298 (46%), Gaps = 26/298 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D  RVF  V +  SF+ AA++L+++Q ++S+ I  LE E+ I+LF R  +G+ LT +G 
Sbjct: 5   LDLYRVFGCVGKCKSFSKAAKELYMTQPAVSQSIMQLEKELDIRLFTRTPKGVILTNEGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    +     +E  + ++ +S     G L+I       +  L   L++F + YP++++
Sbjct: 65  ILFEYVTSAISLIEAGEKKMSDSKNLMIGDLKIGVGDTTSKYFLLSYLEKFHIKYPNVKL 124

Query: 125 QLILDNKDIDI-------SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           + IL+   +++        +D A C +    PI+ S+L  +K + I         + K  
Sbjct: 125 K-ILNGTTVELCNLVKTGDIDLAICNL----PIEDSALEFKKCMEIQDIFVCGERFNKTI 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +PLS  E+ K  LI             N+L +    I  P I   ++ ++  ++Q+  +
Sbjct: 180 SKPLSFVEISKMPLILLDGKSNSRQYVENYLLSKGVNIS-PEI---ELGAHDLLLQFAKI 235

Query: 238 GSGIALLP-----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GIA +      +Y+ K+   L  I  +   P   + FCY   LK+     A R F+
Sbjct: 236 NLGIACVVKEFSLEYLEKE--ILFEIKTEEPIPKRNIGFCY---LKSVSLSPAARTFL 288


>gi|117923763|ref|YP_864380.1| LysR family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117607519|gb|ABK42974.1| transcriptional regulator, LysR family [Magnetococcus sp. MC-1]
          Length = 307

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 74/130 (56%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSF   +LRVFY VA+  SFT AAE+L+L+Q +++ QI  LE     +LF RH   ++LT
Sbjct: 1   MSFSDTRLRVFYAVAKHLSFTRAAEELYLTQPAVTFQIRQLEEHFDTRLFDRHHNRISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +++     +      T+  + E +    G +++  +  +G+ LL   L ++   + 
Sbjct: 61  EAGLEVYSYAERILDLYRETEKAVSELTGVTRGVVKVGASTTIGEYLLPRILSDYRDQFN 120

Query: 121 DIQIQLILDN 130
           D+QI+L +DN
Sbjct: 121 DVQIRLSIDN 130


>gi|315126855|ref|YP_004068858.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315015369|gb|ADT68707.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 323

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 1/185 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++   VA   S T AA +L +  ++ S  I  +E+ +G +LF R  R L L+  G +
Sbjct: 14  DDLKLILKVAECRSITLAAAKLDMRTATASAAIKRVESALGCELFIRTTRHLRLSSAGER 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    LET +  L+       G+LR+AT+ DLG+NL+   + + +  YP + ++
Sbjct: 74  YIPQCEQALAVLETARQNLKGEHDAIEGELRVATSSDLGRNLVIPWIDDIMDRYPSVSLR 133

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + + +ID   D  D A+R   P   SS+   K+  +     A P YL    EP    +
Sbjct: 134 THISDSNIDFFRDSVDIALRYGSP-SDSSVYGFKICNVPRLLCATPTYLAKYGEPEHPDD 192

Query: 186 LDKHN 190
           L +H+
Sbjct: 193 LAQHH 197


>gi|283833825|ref|ZP_06353566.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291070493|gb|EFE08602.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 303

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 106/261 (40%), Gaps = 32/261 (12%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W     F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE 
Sbjct: 9   FAW-----FVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEV 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + +  Q  +    V+P G +++   + L    +   L  F+  YPD+
Sbjct: 64  GQTFYEHCKAMLVEAQAAQDAIAALQVEPRGVVKLTCPVTLLHVHIGPMLARFMARYPDV 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +QL   N+ +D+  +  D AIR+R +P + S L+ R L       YA+P  ++      
Sbjct: 124 SVQLEATNRRVDVIGEGLDVAIRVRPRPFEDSDLVMRVLADRGHRLYASPRLIERMGPVH 183

Query: 182 SIQELDK------------HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL 229
           S  EL +            H    FG    +    F            PR+        L
Sbjct: 184 SPAELTRWPGLSLASGKHVHRWELFGPQGARAEVHFT-----------PRMIT---TDML 229

Query: 230 SIMQYCVLGSGIALLPDYIVK 250
           ++ +  V G G+  LP  +VK
Sbjct: 230 ALREAAVAGVGVVQLPQLMVK 250


>gi|295676625|ref|YP_003605149.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436468|gb|ADG15638.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 310

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 122/294 (41%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D ++VF      GS   A  +L  S +++SR I+ LET  G  L +R  R + L+E G +
Sbjct: 5   DAMKVFVATLDEGSLAGAGRRLGRSPAAVSRAIAFLETHTGTPLLHRTTRTIRLSEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    +   LE   +   +    P G L +   + +G+ +L+  +  FL  +P   I+
Sbjct: 65  YAQACRRILADLEEADLLAADERSAPRGLLGVTAAVAVGEEVLRPIVDAFLDRHPQASIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ + I  +  D A+R+   +Q S+L+   +  +     A+P YL   R      +
Sbjct: 125 LHLHDRPVSIVDEGIDVALRIAH-LQDSTLVAIPVGEVRRVVVASPDYLATHRAIAVPAD 183

Query: 186 LDKHNLITFGDLIPKCMEDF---NWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLG 238
           L  H +I+        M  F   +W     R    P++        VN+  +     V G
Sbjct: 184 LASHPIIS--------MTHFGLDSWSFPSARQTALPQVVRFTPRSIVNTIRAARASAVDG 235

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G+  L  Y V +      L  ++ D       V    P+      K+++F +F
Sbjct: 236 HGVTRLFSYHVAEQVRAGALKIVLRDNEHAPLPVNLVTPQGRLAVPKVRSFVDF 289


>gi|153832180|ref|ZP_01984847.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148871491|gb|EDL70346.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 293

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 130/274 (47%), Gaps = 11/274 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++F  V   GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT  G  
Sbjct: 4   DDLKLFIKVVELGSFTAAANALDLPRANVSRRIGELEQSLGAQLFHRTTRSLSLTNNGEA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +    L++   ++   + +  G++++    +  + L++  L +F   YP +++ 
Sbjct: 64  YYENLQKALTMLDSANEQVSNDTNEVRGRIKLGLLPETDE-LVRPILFDFHDKYPHVELD 122

Query: 126 L-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++N   D+     D A      +  S ++ RKL+T+     A+P+YL+    P +++
Sbjct: 123 IRNINNGFRDMFQQGLDIAFH-GGALFDSDIVARKLLTLDRCLVASPNYLETHGMPENLE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  + F    P    D  W          P++     N+   I    +L  GI  +
Sbjct: 182 QLKEHQCVCFR--WPNGEVDNVWHFQEQSVQLSPKLIS---NNIGFIKNATILNRGITFM 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           P  +V+   ++ +LV+++        + +  YP+
Sbjct: 237 PKVLVRRELESGDLVQLLSHYSVTEESGWLLYPQ 270


>gi|107025793|ref|YP_623304.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693024|ref|YP_838557.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105895167|gb|ABF78331.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651024|gb|ABK11664.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 296

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 14/241 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT A  +L ++Q+++S+Q+  LE  +G  LF R  RGL LT++G  
Sbjct: 11  NALRAFESSARHLNFTRAGLELSVTQAAVSQQVRSLEERLGCTLFTRLPRGLGLTDEGRA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+ + ++ET   +           L +  T  LG   L   LK+F   +P ++++
Sbjct: 71  LLPVLSDAFSRIETVLKQFDGGRFHEVLTLGVVGTFALGW--LMPRLKQFGDTHPFVELR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N  +D++ +  D AIR       ++  +R L+   + A   P   +   +P    +
Sbjct: 129 LRTNNNVVDLAAEGLDFAIRFGVGNWPATRNER-LLDAPLTALCTPDIARRLAQP---AD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L+       +      WL   D    EP  ++    +S   +++  + G+GIAL 
Sbjct: 185 LANETLL-------RSYRTDEWLGWFDAAQLEPWAVNGPVFDSSRLMVEAAMQGAGIALA 237

Query: 245 P 245
           P
Sbjct: 238 P 238


>gi|77462719|ref|YP_352223.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126461612|ref|YP_001042726.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|221638580|ref|YP_002524842.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|332557602|ref|ZP_08411924.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|77387137|gb|ABA78322.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
 gi|126103276|gb|ABN75954.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221159361|gb|ACM00341.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
 gi|332275314|gb|EGJ20629.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 301

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 119/277 (42%), Gaps = 32/277 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   LR    + ++G    AA+ LH++QS++S Q+ GLE + GI+LF R ++ L L+
Sbjct: 1   MHLELRHLRTIRAIHQAGGLARAADVLHMTQSALSHQVKGLEDQAGIELFVRRSKPLKLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L R+   +  +++  + E +      +G+L IA         L   L+ F   +P
Sbjct: 61  AAGIRLLRLAERILPEIDALEDEFRALRSGRTGRLHIAIECHACFEWLFPVLELFRHAWP 120

Query: 121 DIQIQ------------LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168
           +I +             L+ +  D+ IS D          P+    ++   L   H    
Sbjct: 121 EIDVDIRAGLAFEALPALMREEVDLVISSD----------PVTVEGMVFNPLFDYHPTFV 170

Query: 169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNS 227
           AA       RE +S ++     LIT+    P   +  +    V  P   EPR    QV  
Sbjct: 171 AAASNPLAAREFISAEDFRDQMLITY----PVSRDRLDVFTEVLTPAKVEPR-GTRQVEL 225

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVIT 264
              I+       G+++LPD++++D    VR   D +T
Sbjct: 226 TAVILMLVASNRGVSVLPDWVLRD----VRSHADYVT 258


>gi|83718934|ref|YP_440950.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|257140396|ref|ZP_05588658.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83652759|gb|ABC36822.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 300

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 142/301 (47%), Gaps = 13/301 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + ++L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQNELLAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + ++ +N+  D+  D  D A+R + +P Q  +L+ R +  +   A A+P +      P 
Sbjct: 121 VLDVVFENRIEDLMRDEVDIAVRVMSEPPQ--NLVARDMGAVRYVACASPGFAATHGMPT 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSG 240
            + +L    +IT   ++ + +    +L      +  EP    L   ++L + Q  + G G
Sbjct: 179 ELDQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQAILSGLG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIFLKAR 295
           + ++PDY+V D+     ++  +     ++     Y  Y     +T     F +F+  +AR
Sbjct: 235 VGIVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFVLDEAR 294

Query: 296 D 296
           +
Sbjct: 295 N 295


>gi|87122678|ref|ZP_01078554.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86162056|gb|EAQ63345.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 311

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 7/240 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L V   VA   S T AA  L +   + S  +  +E E+G+ LF R  R L ++  G K
Sbjct: 4   EDLHVVLKVAEFRSITAAATSLDMRTGTASAALKRVEAELGVSLFVRTTRQLRISSAGEK 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    L   +  +++      G+LR+A + DLG+NL+   L EF+  YPD+ ++
Sbjct: 64  YIPQCQQALQILSQAKQNMKDGQDIVEGELRLAVSSDLGRNLVIPWLDEFMDDYPDLSLR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             + + +ID   D  D A+R   P   S+L   K+  +     A   YL     P    E
Sbjct: 124 TNISDSNIDFYRDSVDIALRYGFP-DDSNLYGFKICNVPRLTCATHEYLAQHGTPKHPHE 182

Query: 186 LDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +HN + +   D++       +    +   +   RIS    N    + ++CV G GIA+
Sbjct: 183 LSEHNSLNYQLQDVVYDVWNFRHDNNDIKIKVKGNRIS----NDGDLVRRWCVAGKGIAV 238


>gi|94314824|ref|YP_588033.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93358676|gb|ABF12764.1| transcriptional regulator, LysR-family [Cupriavidus metallidurans
           CH34]
          Length = 317

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 112/249 (44%), Gaps = 6/249 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  +  +G+ + AA +L ++++++S  +  LE E+G++L  R  R +  T  
Sbjct: 1   MDLNALRLFVDIVDAGNLSAAARKLKMTRANVSYHLKALEEELGVQLLRRTTRHVEPTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+     +  ++      +        G +R++    LG  ++   L  F   YPDI
Sbjct: 61  GAGLYEHGKNILGEVAAANALISSMGKSLQGHVRLSVPTGLGHTMISPLLVRFKQRYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ DN+  ++  +  + A+R+       S++  ++  +     AAP YL     P  
Sbjct: 121 TLDVVFDNRIHNLVSEDVEVALRIIS-TPPDSVVATEIGGVDWLLCAAPSYLAGRTPPAH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSG 240
           + +L  H ++    +  K         T DR   + EP +S     ++  + +  V G G
Sbjct: 180 LADLTTHAIVCASPIGQKLKVSGTRDGTADREQVVLEPTLSS---ENFAFLKEAVVGGLG 236

Query: 241 IALLPDYIV 249
           I + P Y V
Sbjct: 237 IGIFPLYAV 245


>gi|326424389|ref|NP_763282.2| LysR-family transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|319999779|gb|AAO08272.2| LysR-family transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 300

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 18/293 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F  +A  GS + AA  L + ++ +SR +S LE  VG +L +R  R  +LT+ G +
Sbjct: 5   EALRAFVAIAEQGSLSGAANVLEIERTKVSRYLSELEEWVGSRLLHRTTRKQSLTDAGEQ 64

Query: 66  LHRVTSEVYHKL----ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
                +  Y  L    E + I  ++++   SGKLRIA+   L ++ L   ++ F   +P+
Sbjct: 65  ---TLALAYQMLSLSNEVSAIRDRQNNTL-SGKLRIASAYSLIEHFLLQAVEAFCDQWPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L++ +    +  +  D A+R+   + +  LI R++        A P YL+    P 
Sbjct: 121 VQIELLVADSSTHLIEEGVDLAVRITNDL-APGLIARQMGVCRSALVATPAYLEQFGHPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              +L  H  ++F            W  T D       I   +  N    ++   + GSG
Sbjct: 180 QPSDLPAHRCLSF-----SYFGKNRWYLTRDNRRESIDIQGPITANISTIVLSATLHGSG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I+  P   V  +     L+ ++ D       VY  Y    + T   + F +FI
Sbjct: 235 ISQQPYAAVAPHLAQGRLLPVLPDWQPDELGVYLVYSSRKQITPLHRQFIDFI 287


>gi|270260835|ref|ZP_06189108.1| putative transcriptional regulator [Serratia odorifera 4Rx13]
 gi|270044319|gb|EFA17410.1| putative transcriptional regulator [Serratia odorifera 4Rx13]
          Length = 311

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 9/247 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F V AR  SFT AAEQL+++  ++SRQI  LE E+G++LF+R    + L + G    
Sbjct: 17  LHTFEVAARCASFTEAAEQLNVTLGAVSRQIRQLENELGVELFHRKGNAVALNDTGK--- 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R+ ++V   L   Q     +       L++  T+ +  + L   L       PD+ + L 
Sbjct: 74  RLATDVTRALTLLQKASDRARPAQQQTLKLTCTLGIASHWLAARLPALRHADPDVSLVLD 133

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +    D++   AD AIR   P  +     R+L+       A+P +L       S+ +L 
Sbjct: 134 ANESLRDLASGEADIAIRY-SPTANPPPHSRELLADAFAPLASPAFLA-AHPAFSLADLP 191

Query: 188 KHNLI--TFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +  LI   + D        + +W A        PR   L VNS    +Q  + G+GI L 
Sbjct: 192 QAPLIHSPWKDAQGLGAAGWQDWFAAFGAGAAAPR-GILTVNSVGHALQEAMEGNGIVLG 250

Query: 245 PDYIVKD 251
              + +D
Sbjct: 251 SLAVAQD 257


>gi|226228365|ref|YP_002762471.1| LysR family transcriptional regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226091556|dbj|BAH40001.1| LysR family transcriptional regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 298

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 131/307 (42%), Gaps = 42/307 (13%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++LR  + V   GS   AA+ L+++ S+IS+QI+ LE EVG  L  R  RG+ LT+ G  
Sbjct: 5   ERLRSLHAVEAYGSLHAAADALNVTASAISQQIAKLEREVGEPLLERRGRGVALTDAGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       +  L   +  L       +G++RI     + + L    L+     +P +Q++
Sbjct: 65  LTGHAERAFSVLRQAEAALDARRAVVAGEVRIGAFATVMRGLAPQALRSLASDHPQLQVR 124

Query: 126 L----------ILDNKDIDISM--DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
           L          +L+  DID+++  D+A+      +P++    ++R  V   +   A P  
Sbjct: 125 LQEMEPLEAIELLERGDIDLALAQDWAN------RPLRVPEGLERAPVYDDIADIALP-- 176

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDF-------NWLATVDRPIG-EPRISCLQV 225
                   S   L  H+ +   DL       +       +WL    R  G EPR+    +
Sbjct: 177 --------SDHPLAHHDTVALSDLAGDTWISWREGSICHDWLMLTLRAQGREPRVQHFAL 228

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFT--VYFCY-PEALKNTGK 282
             Y + +     G G A+LP       P+ V +M   +TPS T  VY  +  +A + T  
Sbjct: 229 E-YATQLSLVGAGLGAAVLPRLGRGAVPDNVCVMP--VTPSLTRHVYALWRSDAARRTAI 285

Query: 283 LKAFRNF 289
           L A   F
Sbjct: 286 LAAVAAF 292


>gi|190891684|ref|YP_001978226.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190696963|gb|ACE91048.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 309

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 128/308 (41%), Gaps = 40/308 (12%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG---- 63
           LR F   AR  S T AAE+LHL+  ++SRQI  LE  +G+ LF R  R + LTE G    
Sbjct: 11  LRAFEATARRLSMTMAAEELHLTHGAVSRQIKALEDHLGVPLFRRLTRKIELTEAGIAFF 70

Query: 64  -------SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
                  S+L RV  ++  K +TT             +L I+  +      L   L   +
Sbjct: 71  GTVTRLLSELARVAEDIRRKNDTT-------------RLVISAGVSFASKWLTPRLHRLM 117

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRK---PIQSSSLIQRKLVTIHMHAYAAPHY 173
             YPD  + L + +  +D +    D A++      P  ++  I  + V+       AP Y
Sbjct: 118 AHYPDFDVHLQVTDAPVDFASGDVDVALQYGTGSYPFAAAERIMNETVS----PVCAPEY 173

Query: 174 LKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
                   +  +L K  LI     I        W A ++ P  + R       S +SI +
Sbjct: 174 RDRMGGLATPADLAKCKLI---HEIGMTTTWERWFAMMELPYPKTRGPGYSHGS-MSI-E 228

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYF----CYPEALKNTGKLKAFRNF 289
             + G G+AL    +V ++    R++         V +     Y    ++  KL+AFR++
Sbjct: 229 AAIRGEGVALGRSVLVAEDLAQGRLVALFPKARLDVEWGYDLVYAIGTQDHPKLRAFRSW 288

Query: 290 IFLKARDW 297
           I  + R++
Sbjct: 289 ISGEVREF 296


>gi|161524270|ref|YP_001579282.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350973|ref|YP_001946601.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341699|gb|ABX14785.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189334995|dbj|BAG44065.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 313

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 109/244 (44%), Gaps = 18/244 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +R F  V R  S T AA+ L ++QS++SRQI  LE  +G+ L  R  R +  T +G +
Sbjct: 12  DLVRGFVAVGRRMSITLAAQDLCVTQSAVSRQIHALEAHLGVALLRRGYRTIAFTPEGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R      H L+ T   L  +  +    + I  +I +    L   L       PD+ ++
Sbjct: 72  LFRAADAALHSLQDTVASL--AVARERQPVTITASIGVTALWLLPRLGGLQARLPDVDLR 129

Query: 126 LILDNKDIDISMDYADCAIRL----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  ++K +D+  +  D AIR     R P  +  L    ++ +   A AA       R  +
Sbjct: 130 VAANDKVLDLRAEGIDLAIRYCPRDRAPAGALRLFDEIVLPVAHPALAA-------RPLV 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRI-SCLQVNSYLSIMQYCVLGS 239
               L +H L+ F D  P+      W A +    +G+ R    L+ N Y  ++Q  + G 
Sbjct: 183 DAAALAEHVLLEF-DGPPQAQ--LQWQAHLRAAGLGDARPKGVLRFNQYDQVIQAAIAGQ 239

Query: 240 GIAL 243
           G+AL
Sbjct: 240 GVAL 243


>gi|90417058|ref|ZP_01224986.1| transcriptional regulator, LysR family protein [marine gamma
           proteobacterium HTCC2207]
 gi|90331074|gb|EAS46330.1| transcriptional regulator, LysR family protein [marine gamma
           proteobacterium HTCC2207]
          Length = 304

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 137/316 (43%), Gaps = 47/316 (14%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG---- 63
           LR F   AR  +FT AA +L+++Q++IS+QI GLE+++G  LF R  RGL LT+      
Sbjct: 12  LRSFEAAARHLNFTLAAAELNMTQATISQQIKGLESQLGCALFIRLPRGLELTDAARAYI 71

Query: 64  -------SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
                   KL  VT EV+ K             + S  L + + +      L   L  F 
Sbjct: 72  PGVRESIEKLSVVTDEVFGK-------------ERSHTLTVRSNLVFFNTWLAPRLANFR 118

Query: 117 LLYPDIQIQLI----LD--NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAA 170
             YPDI ++      LD  NK+ DI + Y      +   + S  L   +L+ +       
Sbjct: 119 HNYPDIDLRFTSNIWLDSVNKEADIEIRYGKG---MWPDLISDRLTWDQLIPVCSPQLLG 175

Query: 171 P-HYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VN 226
           P H  K+   P + +EL +H L+    +I       +WL    + +G   I   Q    +
Sbjct: 176 PDHISKDTPPPSNAEELAEHTLL---HVIGYEEGWGHWL----KKLGHHSIDASQGIHFD 228

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           S ++ M+  V G GIAL    I      +  L++  E  +T     +   P        +
Sbjct: 229 SLITAMEMAVQGHGIALSRTSIASTLLASGKLIKPFEGGVTTEEAFFIAIPSNKPIQNHV 288

Query: 284 KAFRNFIFLKARDWKF 299
           +AFR+++  + ++ ++
Sbjct: 289 QAFRSWVIHQGQNARY 304


>gi|322832353|ref|YP_004212380.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167554|gb|ADW73253.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 298

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 15/245 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + +  F  VA++GSF+ AA Q  + QS++S+QI+ LE E+G+ L +R  R + LT
Sbjct: 1   MNNKLNAIATFLRVAQAGSFSAAARQSGMKQSAVSQQIAALEEELGVVLLHRTTRVMALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG    R    +   +   +  L  +     G++ +     LGQ  L  +L     +  
Sbjct: 61  EQGESYRRDMQLLLEAMREAERRLNPADHHWHGRVHVQLPSGLGQLFLP-HLLTLQKMNS 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + + L LD++  D+  +  D A+RL  +P Q+ +   R L  I    +AAP +     +
Sbjct: 120 GLHLTLSLDDRIADLVTEGVDVALRLTHEPPQTHA--ARVLARIETALFAAPGF-----K 172

Query: 180 PL-SIQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           P+ S+ EL  H  + F  + P+  +   +   T+D  +     +  + N+  +++Q    
Sbjct: 173 PVHSVSELAAHPHVRFSGIAPEAPLRLVSDSETIDIKVN----TVFRANTSEALLQAIES 228

Query: 238 GSGIA 242
           G GI 
Sbjct: 229 GMGIG 233


>gi|258621517|ref|ZP_05716550.1| transcriptional regulator [Vibrio mimicus VM573]
 gi|258586135|gb|EEW10851.1| transcriptional regulator [Vibrio mimicus VM573]
          Length = 311

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 138/290 (47%), Gaps = 33/290 (11%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S   D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R ++ L LT
Sbjct: 10  LSMKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRSSKELVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L    +E++ ++E  Q +++++     G++ I+  +   ++ L     EF  LYP
Sbjct: 70  KEGEQLFHTYAELFAEIERKQDQVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFSELYP 129

Query: 121 DIQIQLILDN-------KDIDISMDYADCAIRLRKPIQSSSLIQRKL-----VTIHMHAY 168
           ++ ++L + +       +D+DI++ +         P   S  + RKL     V      +
Sbjct: 130 NVTLRLQVGSGLDYFTQRDLDIALRFG--------PQPESDWVARKLARNPSVLCASAPF 181

Query: 169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
           AA   L +       Q+L+++ L++    +P           V   I   R+S  +++  
Sbjct: 182 AASLSLSHP------QQLNQYPLLSLNHKLPWIFHSKESDQKVQF-IPSARLSSDELD-- 232

Query: 229 LSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
            +I+Q  + G GIA LP  ++    D+  LV ++ +       VY  +P+
Sbjct: 233 -TIVQATLQGMGIARLPRGLMAPLLDDGQLVELLPEWEIEGADVYLLHPQ 281


>gi|146283440|ref|YP_001173593.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145571645|gb|ABP80751.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501]
          Length = 302

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 119/287 (41%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F +VA  GSF  AA + +++   + R++  LE  +G+KL +R  RGL+LT+ G +  
Sbjct: 7   LRSFVLVADCGSFAAAAHKENVTPVVMGRRLDALERHLGVKLMHRSTRGLSLTDLGEQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +     +        G L ++     G+  +  +   F   YPD+Q+   
Sbjct: 67  ERARGLLRDFDEVDASISHDRNSVRGHLVVSAPAAFGRRHIGPHAPAFQARYPDLQLSFN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+     D  IR+ + +   + +  +L         +P Y      P +++EL 
Sbjct: 127 FTDSVVDLVRHGYDMGIRIGE-VTDPNYVAVRLFPNRRVVCGSPEYFARHGTPTTLEELT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +HN + F     +  +   W    D R +       L  N    +  +   G GI     
Sbjct: 186 EHNCLAFN---LQGGQQRGWTFLRDGRQVAIRVAGNLDCNDGELLFDWVKQGLGIGWRST 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + ++       LV ++++   P++ +   YP+      K++ F +++
Sbjct: 243 WEIQAELKRGELVTVLDEYALPAYDIQAVYPQQRYLPAKVRFFIDYL 289


>gi|27380741|ref|NP_772270.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27353906|dbj|BAC50895.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 277

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 5/158 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR+   V   G++  A+ +L + ++++ R++S +E  +G++LF   A G+    +
Sbjct: 1   MNWDDLRIIAAVRDEGTYAGASARLRIDETTVGRRLSRIERALGLRLF-EAADGVRRPTR 59

Query: 63  GSK--LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             +  L  V +   H  E  ++   ES   P G+LRIA+T  + + +L     +FL   P
Sbjct: 60  SCEAVLAHVEAMAAHAAEIGRV--GESLAGPVGRLRIASTNTVAEEVLSPRASDFLRANP 117

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQR 158
            + +Q +  ++++  S   AD AIRLRKP +    I R
Sbjct: 118 GLTLQFLTSSENVKFSRWEADLAIRLRKPDKGDFAISR 155


>gi|296156519|ref|ZP_06839357.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893118|gb|EFG72898.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 298

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 131/300 (43%), Gaps = 19/300 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +  F  AA +L++S S +SR ++ LE  +G++L  R  R + LT+ G+   
Sbjct: 7   MTTFVTVVETEGFASAARKLNVSPSVVSRMVTELEERLGVRLLTRTTRIVRLTDAGATYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  ++    +   P G+L +   +  G+  L   + ++L  YP + +   
Sbjct: 67  EDCRRILGEIDAAEVTAAGTHAAPRGQLTVTAPVLFGKMHLMPIVLDYLARYPAVNVNCW 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +++  + AD A+R+ + + SSSL    +  +     AAP YL     P   ++L 
Sbjct: 127 FLDRVVNMVDEGADVAVRIGE-LPSSSLQAIAVGGVRRVLCAAPAYLDRYGVPERPEDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            H  I    + P       W  T DR     PI +PR+     +S ++     V G G+ 
Sbjct: 186 GHTTIQASGVSPAP----EWRFTADRQSLVVPI-QPRMITTTNDSAIA---AAVAGLGVT 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDW 297
            L  Y V    +   L  ++ D    +  V+  + E      K+++F +     L+ + W
Sbjct: 238 RLLSYQVAREIEAGALKIVLADYEPAALPVHVVHREGRHANQKVRSFLDLAIETLRTKSW 297


>gi|213028699|ref|ZP_03343146.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 184

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 86/171 (50%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G +
Sbjct: 13  EAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRR 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ 
Sbjct: 73  YYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPELELI 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++ 
Sbjct: 133 LCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIER 183


>gi|118478757|ref|YP_895908.1| LysR family transcriptional regulator [Bacillus thuringiensis str.
           Al Hakam]
 gi|196042643|ref|ZP_03109882.1| transcriptional regulator, LysR family [Bacillus cereus 03BB108]
 gi|225865465|ref|YP_002750843.1| transcriptional regulator, LysR family [Bacillus cereus 03BB102]
 gi|229185720|ref|ZP_04312898.1| Transcriptional regulator, LysR [Bacillus cereus BGSC 6E1]
 gi|118417982|gb|ABK86401.1| transcriptional regulator, LysR family [Bacillus thuringiensis str.
           Al Hakam]
 gi|196026127|gb|EDX64795.1| transcriptional regulator, LysR family [Bacillus cereus 03BB108]
 gi|225786424|gb|ACO26641.1| transcriptional regulator, LysR family [Bacillus cereus 03BB102]
 gi|228597807|gb|EEK55449.1| Transcriptional regulator, LysR [Bacillus cereus BGSC 6E1]
          Length = 283

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 124/256 (48%), Gaps = 21/256 (8%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L VFY VA+  + +HAA+ L+  QS ++ ++  LE E+G+ LFYR+ +G+TLT  
Sbjct: 1   MDIKDLTVFYEVAKENNISHAAKNLNYVQSGVTMRMKQLENELGVPLFYRNGKGVTLTSN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++ H ++ +   +Q +  +P G L+I  T       L   L  +   YP++
Sbjct: 61  GEILLTYAKQIIHLMDQSIKAVQSNGTEPKGTLKIGCTESTTAVRLPSILTTYYEKYPEV 120

Query: 123 QIQLILDNKD--IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ L  +  +  I + +D       +    Q + L        H + +     +   ++P
Sbjct: 121 ELILETNTTEQLISLVLDRKLDGAFIAGSTQHNEL--------HSNVFHEEELVLISKKP 172

Query: 181 L-SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           L S+++++  NL+ F  G      +ED  WL   D  I   R+  L+  +  +I+  CV 
Sbjct: 173 LSSLKDIEDMNLLAFSHGCYYRSLLED--WLQEED--ISPKRV--LEFGTIEAILA-CVK 225

Query: 238 GS-GIALLPDYIVKDN 252
            S G+A++   I+K++
Sbjct: 226 SSMGVAIMMKSILKEH 241


>gi|325271604|ref|ZP_08138109.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324103262|gb|EGC00604.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 303

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 117/262 (44%), Gaps = 9/262 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L +R +R  +LTE G
Sbjct: 3   DLNSLYYFTQVVEHGGFAPAGRALDMPKSKLSRRIADLEERLGVRLLHRTSRHCSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E     ++ +  +P G +RI+    L  + +   L  ++L YP ++
Sbjct: 63  QAYYNRCLAMRVEAEGAAEIIERNRSEPRGLVRISCPTTLLNSWVGPMLTRYMLKYPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             +   N+ +D+  +  D A+R+R  P++++ ++ + L          P YL+   +   
Sbjct: 123 QFIESTNRRVDLLHEGFDIALRVRFPPLENTDMVMKVLSNSTQCLVGQPQYLEQLPKGFD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL----ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            Q L     + +G        ++ W         R I  P    +  +   ++  + V G
Sbjct: 183 PQLLSTLPSLHWG----SAQREYQWELFRGEDSSRSIVIPHKPRMVTDDLFALRHFVVAG 238

Query: 239 SGIALLPDYIVKDNPNLVRIME 260
            GIA LP   V+++    R++E
Sbjct: 239 VGIAHLPRVAVREDLAAGRLVE 260


>gi|213647457|ref|ZP_03377510.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 150

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 73/138 (52%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   +
Sbjct: 7   MKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L 
Sbjct: 67  ERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYPGIALELC 126

Query: 128 LDNKDIDISMDYADCAIR 145
             ++ +D+  +  DC +R
Sbjct: 127 SSDRQVDLLREDFDCVVR 144


>gi|260777577|ref|ZP_05886470.1| D-serine dehydratase transcriptional activator [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605590|gb|EEX31875.1| D-serine dehydratase transcriptional activator [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 313

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 7/169 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           KL  F V AR GSF  AA +L L+ S++S QIS LE E+ ++LF R  R +TLT  G +L
Sbjct: 20  KLYTFEVAARLGSFALAAHELCLTPSAVSHQISKLENELKLQLFERQHRKVTLTADGEQL 79

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    +L ++  +++   +  SG L I        + L   L +F   YP I I+L
Sbjct: 80  FTSVTLALSQLNSSIEQVKSGHI--SGGLTIYARPSFAHDWLAPRLHDFCEQYPSIDIKL 137

Query: 127 ILDNKDIDISMDYADCAIRLRK--PIQSSSLIQRKLVTIHMHAYAAPHY 173
           I  N  +D++    D AI      P  S SL   KL   H+    +PHY
Sbjct: 138 ITGNDTLDLNRHGIDLAIYYSNVTPDASWSL---KLNEEHVIPVCSPHY 183


>gi|193077085|gb|ABO11848.2| regulatory protein LysR:LysR, substrate-binding [Acinetobacter
           baumannii ATCC 17978]
          Length = 304

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 137/298 (45%), Gaps = 19/298 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTEQ 62
           + LR F   AR  SF+ AA++L+++ +++ + +  LE  +G  LF+R   G   L  TE 
Sbjct: 8   NALRAFEASARHKSFSAAAKELNVTPAAVGQLVRTLEDWLGFPLFHRQTNGKNRLVATEL 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              +       + KL     +L++ S+  SG L IA +    +  L   +  F   YPDI
Sbjct: 68  AESVLPDIRAGFDKLTLALEKLKQDSL--SGVLNIAVSPAFAEKWLLPRIDHFQKQYPDI 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L ++ K +D      D  +R  +  Q   L   KL+   ++   +P +L      L+
Sbjct: 126 DIRLDINLKTVDFLEQKVDVGVRYGQG-QWQGLEAVKLMDEEVYPVCSPAFLNEHSFLLT 184

Query: 183 IQELDKHNLITFGDLIPKCMEDF----NWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVL 237
             +L   N+    DL  +  + F    +WL +V   + +  IS  +Q+NS  +++Q  + 
Sbjct: 185 PNDL--KNITLIHDLSMEKHQQFPGWQSWLKSVG--LNDINISRGMQINSSSAVLQAAME 240

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G G+AL    +V+ +     L+R+   +  +  F+ Y  Y     N  K+K   ++ F
Sbjct: 241 GHGVALARSVMVQKDIQTGRLIRLFPQINFSSPFSYYLVYRPQYANLPKVKICLDWFF 298


>gi|33600067|ref|NP_887627.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33567665|emb|CAE31579.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 314

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 122/296 (41%), Gaps = 19/296 (6%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V R G F  A   L++ +S +SR+++ LE  +G++L +R +R  ++T  G + +   
Sbjct: 21  FVQVVRHGGFAQAGRLLNIPKSRLSRRVAALEERLGVRLVHRSSRSFSVTHIGQEYYAQC 80

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +    E  Q  +     +P G LR+     L Q  L   +  F++  P + + L   N
Sbjct: 81  QAMLAGAEAAQEVIDRVHAEPQGILRVTAPPALIQGALAQLVARFMIQCPKVHVHLKSLN 140

Query: 131 KDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  +  D A+R+R  P++SS L+ + L        A+P  L         ++L + 
Sbjct: 141 RPVDVLSEGFDLAVRVRFGPVESSDLVMKPLGVARQRLVASPRLLARGAAIRGPEDLARL 200

Query: 190 NLITFGDLIPKCMEDFN-----WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             +  G  + +   D         A   RP        L  +   ++    + G G  +L
Sbjct: 201 PSVALGTDLREGRWDLEDDQGRRFAVALRP-------RLATDDATALKAAVLAGVGAGVL 253

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P  +V++      LV + E        V+  +P      G + A R  +    +++
Sbjct: 254 PLVMVREELRAGTLVALCEPWQPAPGQVHAVFP---SRRGVMPAVRELLEFLGKEY 306


>gi|323497496|ref|ZP_08102514.1| transcriptional regulator, LysR family protein [Vibrio sinaloensis
           DSM 21326]
 gi|323317579|gb|EGA70572.1| transcriptional regulator, LysR family protein [Vibrio sinaloensis
           DSM 21326]
          Length = 320

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 4/173 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + +  + L+VF  VAR  SFT+AA++L+++QS++SRQI  LE E+  +L  R  R + LT
Sbjct: 7   LPYSHNSLKVFEAVARLMSFTNAAQELNVTQSAVSRQIKQLEQELNCELLIRKHRTIELT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+ V  + +H L++    + +       ++ I + +     +L  N+      YP
Sbjct: 67  EQGKDLYEVLRQNFHNLDSL---ISQWKAPAKKRIVIKSALSYATRVLMPNVAMLNEKYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY 173
           + +I +I+ + + D  ++Y D  + +    Q    I +  +T     Y AP Y
Sbjct: 124 EHEI-VIIPSIEEDPPLEYEDSDLLILNTRQRERYIGKPGITFLRAEYMAPVY 175


>gi|229174159|ref|ZP_04301694.1| Transcriptional regulator, LysR [Bacillus cereus MM3]
 gi|228609280|gb|EEK66567.1| Transcriptional regulator, LysR [Bacillus cereus MM3]
          Length = 280

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 45/259 (17%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L VFY VA+  + +HAA+ L+  QS ++ ++  LE E+G+ LFYR+ +G+TLT  
Sbjct: 1   MDIKDLTVFYEVAKENNISHAAKNLNYVQSGVTMRMKQLENELGVPLFYRNGKGVTLTSN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++ H ++ +   +Q + ++P G L+I  T       L   L  +   YP  
Sbjct: 61  GEILLTYAKQIIHLMDQSIKAVQSNGIEPKGTLKIGCTESTTAVRLPSILTAYYEKYP-- 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-----------VTIHMHAYAAP 171
           +++LIL+        +  +  IRL        +++RKL             +H   +   
Sbjct: 119 KVELILET-------NTTEQLIRL--------VLERKLDGAFIAGATPHAELHTSVFREE 163

Query: 172 HYLKNCREPL-SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRI-------- 220
             +   ++PL S+ +++  NL+ F  G      +ED  WL   D  I   RI        
Sbjct: 164 ELVLISKKPLSSLTDIENMNLLAFSHGCYYRSLLED--WLQEED--ISPKRILEFGTIEA 219

Query: 221 --SCLQVNSYLSIMQYCVL 237
             +C++ N  ++IM   +L
Sbjct: 220 ILACVKSNMGVAIMMKSIL 238


>gi|222084559|ref|YP_002543088.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722007|gb|ACM25163.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 292

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 126/292 (43%), Gaps = 22/292 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  L  F  +AR+GS + AA +L +  +++ R+I+ LE  + ++L  R  R   LT  
Sbjct: 2   IDWQDLLHFASLARTGSLSAAARELGVDHATVGRRIAALERTLDLRLIDRRPRTSPLTAD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +  +   +   +E  +   + +    S  ++I+    +  +L+      F   +PDI
Sbjct: 62  GRAIAELVVGMEENVEAIRRYSKSAVAGLSAAVKISAPPSIAAHLIAPKAVGFRAEHPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +    +   +    AD A+R+ +P + S L+ R++  +    YA P           
Sbjct: 122 TLTIAGVTRRAALDHGEADIAVRMTRP-EESDLLVRRIGVMRFGLYAIPE---------- 170

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           I E  + + I  G D   + +    WL ++   RPI        +       ++    G 
Sbjct: 171 IAETPEEDWIFIGYDAALEHLTQQTWLRSLLAGRPI------VFRAGDIFGQLEAARAGL 224

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFI 290
           G+  LP ++      L R+   + +P+  ++   YP+ L+ +  ++A  +F+
Sbjct: 225 GVVALPAFLGDGEAALTRLSTAIPSPTRDLWLVTYPD-LRRSPAIRAVMDFV 275


>gi|117619472|ref|YP_856183.1| putative HTH-type transcriptional regulator YafC [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560879|gb|ABK37827.1| putative HTH-type transcriptional regulator YafC [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 300

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 117/252 (46%), Gaps = 13/252 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF  AAE L +  S +SR I  LE ++   L  R  R ++LTE+GS 
Sbjct: 6   DELTLFVAVVEAGSFRQAAENLGMDNSVVSRGIKRLEEKLSTVLLNRTTRRVSLTEEGSW 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++  ++   +  L     +P G LR+        + L   + EF   YP I++Q
Sbjct: 66  FYQRAVKILTEMSEAEGLLLMRREQPEGVLRVDAATPFILHRLVPIIGEFRRRYPAIELQ 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK---NCREPLS 182
           L      I++     D AIR+ + +  SSL    L    +   A+P YL+     R+P+ 
Sbjct: 126 LHSSEGFINLMERRVDMAIRIGE-LTDSSLRALPLGRSRLRLLASPDYLRERGTPRQPID 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240
           +  L  H L+ F  L P   +  N    + +  G+  P    L+ +S  ++ Q  + G G
Sbjct: 185 L--LSGHELLGF--LHP---DHLNHWPLLSQEQGDRFPITPTLRASSGETLRQLALRGQG 237

Query: 241 IALLPDYIVKDN 252
           I  L D++   +
Sbjct: 238 IVCLSDFMTGQD 249


>gi|114761110|ref|ZP_01441025.1| putative transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114545358|gb|EAU48360.1| putative transcriptional regulator, LysR family protein
           [Roseovarius sp. HTCC2601]
          Length = 308

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 127/278 (45%), Gaps = 16/278 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F    R+GSFT A  +L L+ S++ + +S LE  +G KL +R  R L+LT +G +  
Sbjct: 11  VREFVETMRNGSFTAAGARLGLTGSAVGKSVSRLEARLGTKLLHRTTRRLSLTPEGQRYF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +  +   S + SG+L I      G+  +   L      +P + + + 
Sbjct: 71  DGWVAILSDVQGLEQSVTVGSGQVSGRLSIHLPAAFGRRHVMPVLSRLAEDHPALDLAVS 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              + +++  +  D  +R+      + L+ R+L    +   A+P YL     P +   L 
Sbjct: 131 FTERRVNLIDEGVDLVVRIGALSDDADLVARRLGRQRLVICASPAYLAAHGTPAAAAALT 190

Query: 188 KHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----IMQYCVLGSGI 241
           +H+ I     D +P      +WL  + +P G      ++     S    +++  + G+G+
Sbjct: 191 EHDCIIGSRRDGVPP-----SWL--LRQPDGSISTQAIRARHEFSDGDAMLEATLAGAGL 243

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           + LP ++V D   + +L+ +++DV      ++  +P +
Sbjct: 244 SQLPTWLVSDALASGDLITVLDDVSGAEMPIHAVWPRS 281


>gi|86144834|ref|ZP_01063166.1| putative transcriptional regulator, LysR family protein [Vibrio sp.
           MED222]
 gi|85837733|gb|EAQ55845.1| putative transcriptional regulator, LysR family protein [Vibrio sp.
           MED222]
          Length = 309

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 1/190 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  + +      A  +L LS ++++ ++  LE   G+KL  R  R ++LT+ G 
Sbjct: 4   FSDMAMFVSIVKHHGLAAAGRELGLSPATMTARLQALEERYGVKLLNRSTRHVSLTDSGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+   E+   +   +  +Q    +  G L+IA   D+G+  +   L EF   YPD+  
Sbjct: 64  LYHKACLEILDNVSEAENLIQNGVKEVKGSLKIAAPKDIGKQYILPILSEFCQQYPDVIP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L++   +I+    D  IR  + +  SSLI R+L        A+P YL     PL+ Q
Sbjct: 124 YLYLNDNLSNIAESGMDIVIRYGELVD-SSLISRRLSPSRRVLCASPEYLAKHGTPLTPQ 182

Query: 185 ELDKHNLITF 194
           +L +H+ +  
Sbjct: 183 DLVEHDCLAM 192


>gi|329895489|ref|ZP_08271042.1| transcriptional regulator [gamma proteobacterium IMCC3088]
 gi|328922284|gb|EGG29631.1| transcriptional regulator [gamma proteobacterium IMCC3088]
          Length = 296

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 134/305 (43%), Gaps = 31/305 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD L++   + R  S   AA +L +S ++I R++  LE  VG +LF R   G   T  
Sbjct: 1   MNWDDLKILLALNRERSSRKAANRLGISNTTIIRRLELLEEAVGARLFDRTPDGFQTTSV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L R   EV  K+   +  +        G +++A      Q + Q +  EF+  YP I
Sbjct: 61  GEQLVRTAIEVEDKIAEGERHVTGRDTDLEGIIKVALPEGPVQYIAQ-SFAEFVNQYPRI 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL-------- 174
           Q+ L   N+ +D++   AD A+R+   ++  + + + +V I + + +  +Y+        
Sbjct: 120 QLDLSASNEPVDLARREADVALRV---LRLDAKLPKDIVGIRLGSMSFGYYIHKDLLSEV 176

Query: 175 KNCREPLSI--QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           +  R PL+I     D+ ++     L P           V R + + R + L         
Sbjct: 177 QAGRTPLTIMSSSTDEPDI----KLAPTTYPTPIVKRHVMRGVNQMRAAIL--------- 223

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             C +G+G   LP     D P +V++ +        V+  Y + L+ + +++AF   +  
Sbjct: 224 --CRMGAG--ELPSIACSDTPEVVQLPDTKAERYGYVWLLYHKDLRQSARIRAFFKHVAG 279

Query: 293 KARDW 297
             R+W
Sbjct: 280 LQRNW 284


>gi|296162342|ref|ZP_06845135.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887375|gb|EFG67200.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 292

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 122/275 (44%), Gaps = 29/275 (10%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD + LRVF VV   GS   AA+  H+  S+ SR+IS LE   G  LF RH+RG+  T
Sbjct: 1   MRFDLESLRVFAVVVEQGSIAAAADAAHIVASAASRRISELERHAGTPLFERHSRGMHPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L+R    +  + +  + EL E +    G +R++       + L   L  FL    
Sbjct: 61  AAGQTLYRHVRRILEQFQQAEDELDEYTRGVRGHVRLSVNFTAMAHYLPQALHRFLSANR 120

Query: 121 DIQIQLILDNKDIDISM------DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
           +I+I LI    D+ + M      D+  C+  L +P +  + +  ++  + + A  A H  
Sbjct: 121 EIKIDLIEKTSDMVVRMVENGTVDFGICS--LTEPQERLTCLPYRVDRLFLIA-PAHHRH 177

Query: 175 KNCREPLSIQELDKHNLITFGDLIPK---CMEDFNWLATVDRPIGEP---RISC-LQVNS 227
             C            + + F D++ +    M+D     T+ +        R+   +QV S
Sbjct: 178 AGC------------SRLRFDDVLDEDFVGMQDGASTHTLSQRAATASGRRLKLRIQVTS 225

Query: 228 YLSIMQYCVLGSGIALLPDYIVKDN-PNLVRIMED 261
           + ++      G G  LLP+  + +  P LV+I  D
Sbjct: 226 FEAVRNMVAAGLGFGLLPEIGIPEAVPGLVKIELD 260


>gi|258624283|ref|ZP_05719232.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258583434|gb|EEW08234.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
          Length = 314

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 1/185 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE G   H+ 
Sbjct: 9   LFASIVKNQGLAAAGRELSLSPATVTARLQALEERYGVKLLNRSTRHLSLTESGVLYHQA 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP++   L L+
Sbjct: 69  CLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPEVVPYLYLN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   +++    D  IR  + +  SSLI RKL        A+P YL     P + Q+L +H
Sbjct: 129 DNISNLAESGLDVVIRYGE-LADSSLISRKLAASRRVLCASPAYLARKGTPKTPQDLAQH 187

Query: 190 NLITF 194
           + +  
Sbjct: 188 DCLAM 192


>gi|315499074|ref|YP_004087878.1| transcriptional regulator, lysr family [Asticcacaulis excentricus
           CB 48]
 gi|315417086|gb|ADU13727.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 302

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 81/179 (45%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR  +F  A  +  +S S++S  + GLE  +G++L  R  R +TLT  G +L+   
Sbjct: 14  FLAIARHRNFRRAGLEQGVSASALSHALKGLEARLGVRLLNRTNRSVTLTAAGEELYNAL 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           +  + ++      L      P+G++R+         LL   L  F+ LYPD+++ + + N
Sbjct: 74  NGPFAEISGAVDSLNRFRAAPAGRIRLNVLEHAASLLLAPVLPVFVDLYPDVEVDVSVSN 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
             +D+  +  D  IR    +    + +R    I      +P YL     P   Q+L  H
Sbjct: 134 HMLDVIGEGFDAGIRYGGTVPEDMIARRLSADIGWRIVGSPEYLNTYGVPQHPQDLKAH 192


>gi|209552020|ref|YP_002283936.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539613|gb|ACI59544.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 310

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 126/294 (42%), Gaps = 18/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L+    V   GSF  A   L    + +S++++GLE  +G++L  R  R + +T+ G +
Sbjct: 10  DELQALIAVQDHGSFAAAGRALTRHSTVVSKRVAGLEARLGVRLIERTTRMVRITDAGRR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L          +   +      + + SG LR+A     G+  +   L  FL  +P + ++
Sbjct: 70  LAEEARNGLAIISEAEARASSDATEVSGHLRLAVPATFGRMWIAPALPSFLHAFPKLSVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +      +D+     D A+R+ + +  SS++ R+L+       AAP YL+    P +  +
Sbjct: 130 IDFAEHYVDLVGQGYDAALRIGQ-LADSSIVARRLLDHRRVLCAAPEYLERFGVPRAPVD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L++H  + F  L        +     +  +   R   ++ N   ++++    G GI    
Sbjct: 189 LERHACLEFTRLASFPAWRLSNAEGSETVVVRGR---MRSNDGAALLEAAKAGIGIIGAG 245

Query: 246 DYIVKD---NPNLVRIMEDVITPSFT------VYFCYPEALKNTGKLKAFRNFI 290
           +++        +L R++     P++T      +Y   P A   T    AF +++
Sbjct: 246 EWLTAGAVAEGDLCRVL-----PTWTLDSDGGIYLVRPSARFETAAFTAFSHWV 294


>gi|186471597|ref|YP_001862915.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197906|gb|ACC75869.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 307

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 20/249 (8%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VAR GSFT AA +L ++Q+++SRQ+  LE  +G++LF+R  R + LTE+G  L+ V 
Sbjct: 23  FESVARFGSFTVAANELGVTQAAVSRQVKFLEDTLGVRLFHRLHRSIELTEEGEALYLVV 82

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI--- 127
           +E   K+      L    ++   +L +A T       L   L      +P++Q++L    
Sbjct: 83  AESMQKIAGVFDRLASGPLQQ--ELVLAATSAFSHFRLLPRLASLKHAHPNLQLRLSTQM 140

Query: 128 ----LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
               L +K+ID+++ + D     R    ++SL    L    +    +P ++K+   P S+
Sbjct: 141 FTADLRHKEIDVAVRFGDG----RWGDGTASL----LFDEEVFPVCSPEWVKSRGMPTSL 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
           Q++    LI         M    W   V   +   R++  L+ + Y   +Q    G GIA
Sbjct: 193 QDVANEALIESDSTSEGWMGWEEWFGAVG--LRALRLNFALRCSLYTDAIQAARYGQGIA 250

Query: 243 LLPDYIVKD 251
           L    +V D
Sbjct: 251 LGWGRLVHD 259


>gi|115359109|ref|YP_776247.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|171317685|ref|ZP_02906869.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|115284397|gb|ABI89913.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
 gi|171097160|gb|EDT42011.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 296

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 14/241 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT A  +L ++Q+++S+Q+  LE  +G  LF R  RGL LT++G  
Sbjct: 11  NALRAFESSARHLNFTRAGLELSVTQAAVSQQVRSLEERLGCALFTRLPRGLGLTDEGRA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+ + ++ET   +           L    T  +G   L   LK F   +P ++++
Sbjct: 71  LLPVLSDAFSRIETVLKQFDGGRFHEVLTLGAVGTFAIGW--LMPRLKRFGDTHPFVELR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N  +D++ +  D AIR  +    ++  +R L+   + A  AP   +    P    +
Sbjct: 129 LRTNNNVVDLAAEGLDFAIRFGEGNWPATRNER-LLDAPLTALCAPEIARRLAAP---AD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L+       +      WL   D    EP  ++    +S   +++  + G+GIAL 
Sbjct: 185 LANETLL-------RSYRTDEWLGWFDAAQLEPWSVNGPVFDSSRLMVEAAMQGAGIALA 237

Query: 245 P 245
           P
Sbjct: 238 P 238


>gi|296448062|ref|ZP_06889965.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
 gi|296254419|gb|EFH01543.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
          Length = 299

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 117/287 (40%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F      GS T AA  L +SQ ++S+ +  LE  VG KL  R AR L  T QG  L+
Sbjct: 7   LRAFVRSVERGSMTAAAADLGVSQPAVSKLLRNLEGHVGAKLVERGARALRPTPQGLALY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    ++     L+       G+LR+     +G+  L     +F   +P + ++L 
Sbjct: 67  EAAGGALAVIDAAIEGLRSDGGAIEGRLRLHGPACIGERDLHALAAQFQDRHPAVDVELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ +P     L+ R++        A+P YL       S  EL 
Sbjct: 127 LDNRPVDLIHENFDLALRMERPTD-QRLVMRRIGYSRRILVASPDYLARRGPVASCVELA 185

Query: 188 KHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             +LI T   L    +     L      I  P    L  N+   ++     G G+     
Sbjct: 186 GRDLIVTDASLRAGAL----LLRRGKEKIALPVRPKLTTNNARVLLDALTAGRGVGTTQL 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +V  +     L+R++ D        +  YP        ++AF +F+
Sbjct: 242 LLVAQDLAAGRLLRVLPDWEIEPTEFFLVYPSTRYLRPTVRAFVDFV 288


>gi|296121916|ref|YP_003629694.1| LysR family transcriptional regulator [Planctomyces limnophilus DSM
           3776]
 gi|296014256|gb|ADG67495.1| LysR substrate-binding protein [Planctomyces limnophilus DSM 3776]
          Length = 288

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 2/117 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D+LR F  VAR GSFT AAE LH+SQ ++SR I  LE E G  +F R  R + LT+ G
Sbjct: 2   DLDQLRYFLQVAREGSFTRAAETLHISQPALSRSIQKLEEEFGRPVFERKTRSVELTDAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             L     +V   L+ T+ EL +     SG++RI     +    L   L+ F   +P
Sbjct: 62  QLLQSRAQQVLSILDDTKSELMDDG--ESGRVRIGAIPTIAPYFLPTVLRRFSQKFP 116


>gi|254471502|ref|ZP_05084904.1| transcriptional Regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211959648|gb|EEA94846.1| transcriptional Regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 308

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 125/295 (42%), Gaps = 19/295 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F VV R  SF  AAE+LH++ ++IS QI  LE   G+ LF+R  R L LT++G    
Sbjct: 10  IQAFEVVVRRLSFKDAAEELHVTPTAISHQIKNLEEHFGMALFHRLPRSLRLTKEGEIYA 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E + KL      L    +   G L I TT     N L   LK F    P I ++++
Sbjct: 70  PFIREAFEKLNAGSAALLNDDL--DGTLTITTTNSFASNWLVPRLKRFSEQNPLIAVKVL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ--E 185
             ++ +    D  D AIR  +      L    ++   + A  AP YL    EP  +Q  +
Sbjct: 128 GSDELLTFPKDNIDLAIRYGES-DHVDLHAAWILDDFVSAVCAPDYLPTSPEPSMLQKGQ 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL----GSGI 241
           L ++    F D  P       W           +     VN++ S    C+     G G+
Sbjct: 187 LIQYEWTGFSDKDPSWE---GWFQNQGFGFAPQK----PVNTF-SEEHMCISAARDGHGV 238

Query: 242 ALLPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+       +    R++   D    + + Y   P++  N  K++ F++++  +A
Sbjct: 239 ALVSLIAAARDLEEERLVAPFDYSVKNKSYYLVCPKSSANRAKVQVFQDWLLDEA 293


>gi|171319689|ref|ZP_02908780.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095069|gb|EDT40080.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 313

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 125/285 (43%), Gaps = 11/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+ G      
Sbjct: 20  LFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQDGEVFMAR 79

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP + + L L 
Sbjct: 80  AEALLSAADAARASVGHGRSEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPSVSLDLRLS 139

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  D  D AIRL   ++ S+L+ RKL         +P YL     P    +L +H
Sbjct: 140 DEIVDLVDDGYDVAIRL-GALKDSTLVARKLAANRRVLCCSPAYLAEHGTPRHPADLAQH 198

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             +  GD       D++++ T   P+       L  ++  +I +  V G GIA+   + V
Sbjct: 199 ECVILGD-----QRDWSFV-TPQGPLTVRVGGRLVASNGEAIREALVDGFGIAIKSTWDV 252

Query: 250 KD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                N  LV +++D        ++  YP       K  AF  F+
Sbjct: 253 GPLLANGTLVTVLDDYPFAHDVAIWAVYPSRAHVPLKTLAFIAFL 297


>gi|149909569|ref|ZP_01898223.1| hypothetical protein PE36_17225 [Moritella sp. PE36]
 gi|149807474|gb|EDM67425.1| hypothetical protein PE36_17225 [Moritella sp. PE36]
          Length = 308

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 126/275 (45%), Gaps = 16/275 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR FY ++   S T AA +L+++  ++++++  +E +V +KL  R ARG++LTE+G  
Sbjct: 5   EDLRFFYAISTQPSLTAAARKLNVTPPTVTQRLQAIEAKVSVKLVQRQARGISLTEEGYL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  +++  Q  +       +G L++   +  G + +   + EF   +P++ ++
Sbjct: 65  LQDKARSILAEMDQLQTLMASKKNLINGTLKVLAPLGFGNDYIAPLVGEFQQQHPNLAVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +K         D  I + + ++ S+L    L        A+P YLK    P S + 
Sbjct: 125 LELSDKPSWAESHRWDIIIYIGE-LRDSTLKLAMLAPNQRFLCASPDYLKKHGTPRSPRA 183

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEP------RIS-CLQVNSYLSIMQYCVL 237
           L  H  I+  +      ED   W  T     G+       RI+  L  N    +  + + 
Sbjct: 184 LRDHTCISLRE----NSEDVTLWRFTHTAGDGDSEEQESIRITPTLTSNEGSVVKNWAIA 239

Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTV 269
           GSGI +  ++ V+   N   LVR++ D   PS  +
Sbjct: 240 GSGIIMRSEWDVQPELNSGALVRLLPDYSLPSADI 274


>gi|161522677|ref|YP_001585606.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348466|ref|YP_001941662.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160346230|gb|ABX19314.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189338604|dbj|BAG47672.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 307

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 14/241 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L++F   A  GSF++ A ++ L    ++  I  LE E+ I+LF R  R L LT +G +
Sbjct: 5   EDLQLFVRTAALGSFSNVAREVGLLPGQVAAAIKRLERELDIRLFARSTRSLRLTAEGEQ 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E  H L   Q  ++  S +  G L+++   DLG+N+L   L EF   +P + ++
Sbjct: 65  YLPFAREALHTLHEGQDRIRRESTQLQGLLQVSAPSDLGRNMLLLWLSEFRRQHPALSLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSIQ 184
           L++ ++  D+  D  D A+R       +S +   L   +      AP YL+    P    
Sbjct: 125 LLISDQVADVFRDPVDVALRY-GVFDDASWVALPLAPWNRRVLVGAPDYLERNGRPQKPT 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241
           +L +H+ + +           N  A    P+G+  +     L  N    + +  V G G+
Sbjct: 184 DLAQHHCLLYS---------LNGRAHDRWPVGDQTVQVTGPLFSNDADIVRRLAVAGEGL 234

Query: 242 A 242
           A
Sbjct: 235 A 235


>gi|148243937|ref|YP_001220176.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146400500|gb|ABQ29034.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
          Length = 311

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 125/290 (43%), Gaps = 7/290 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  +  +GS T A+ +++ S  S+SR ++ +E + G  L  R  R +  T+ G   +  
Sbjct: 20  TFVAIVEAGSLTAASRRMNRSLQSVSRALANIERDTGANLVRRTTRSMQPTDAGLVFYGR 79

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E    +     E  E + + +G LRI ++   G   +   +  F+  +P + IQL+L+
Sbjct: 80  IKEALSDIAAAHTEAAELTREIAGTLRIGSSTLFGPTYVVPTIAAFMRRHPAVAIQLVLE 139

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   D+     D AIR+ + +  S  +  ++  +   A+AAP YL     P    +L  H
Sbjct: 140 DSFQDLLKAELDLAIRIGE-LSDSRAMATRVGALRRVAFAAPEYLLKHGRPKVPGDLRAH 198

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             +     + K  + + +  +  +P   P  +C   ++  +  +      GI + P + +
Sbjct: 199 CCVI--RTLTKSPQRWTF-ESAGKPETIPVAACFSSDNAGACNEAVAEAVGIGIAPLWQI 255

Query: 250 KDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                  R   I+ +   P   V+  +P+A     + +AF +F+  + R 
Sbjct: 256 AGMLETGRVELILTEYEPPPTPVHVVWPQASLLPTRTRAFIDFLAARLRS 305


>gi|120600624|ref|YP_965198.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146294780|ref|YP_001185204.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120560717|gb|ABM26644.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
 gi|145566470|gb|ABP77405.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
 gi|319428293|gb|ADV56367.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 290

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 136/290 (46%), Gaps = 20/290 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF   AR   F+ AA++L ++QS++S Q+  LE   G +LF R  R L LT +G  L 
Sbjct: 10  LQVFETAARQQHFSKAADELCITQSAVSHQVRVLEEYFGEQLFDRQGRKLQLTPKGQGLF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                ++++L    ++++++   P+ +L +A         L   L +F   YP ++I+L 
Sbjct: 70  IELERIFNELSDLNLKVKDT---PNKQLCLAVYSSFAVKWLIPRLADFRRQYPSVKIRLE 126

Query: 128 LDNKDIDISMDYADCAI--RLRKPIQSSSLIQR-KLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  +D D+S   AD  I  +L +      L+ + +L+T+      +P +    RE +++ 
Sbjct: 127 MITQDPDLSTSTADIFIAGKLNQRGYWQQLLHKERLITV-----CSPSFYPKWRE-INLN 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              +  L+   D  P  ++   W +    P+   +      +  +  ++  + G G+AL 
Sbjct: 181 NFQQQALLVV-DEGPLGLDWHKWSSAHQIPLNNEQQHVF--SHIVMAIEAAIAGQGLALA 237

Query: 245 PDYIVKDNPNLVRI----MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PD++V  +    R+    + DV T     +FC    L     + AF +++
Sbjct: 238 PDFMVAGDIATGRLVAVNLPDVHTGFEFTFFCKQRRLSEPA-IAAFSSWL 286


>gi|258622217|ref|ZP_05717243.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|262164683|ref|ZP_06032421.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|258585541|gb|EEW10264.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|262027063|gb|EEY45730.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 311

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 1/185 (0%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE G   H+ 
Sbjct: 9   LFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTESGVLYHQA 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP++   L L+
Sbjct: 69  CLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPEVVPYLYLN 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   +++    D  IR  + +  SSLI RKL        A+P YL     P + Q+L +H
Sbjct: 129 DNISNLAESGLDVVIRYGE-LADSSLISRKLAASRRVLCASPAYLARKGTPKTPQDLAQH 187

Query: 190 NLITF 194
           + +  
Sbjct: 188 DCLAM 192


>gi|152970396|ref|YP_001335505.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955245|gb|ABR77275.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 297

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 126/274 (45%), Gaps = 21/274 (7%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E+  G +L +R  R LTLT  G K+  
Sbjct: 8   QVYLRICELGSLSAAARALGMSRPMVSRYLEQMESWAGARLIHRSTRRLTLTPAGEKVLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            T  +    +    E Q +   PSG LR+A        L+   L +FL  YP ++++L +
Sbjct: 68  KTRGLTRIADEIAGERQRA--DPSGTLRVACAHFTAMQLISPLLPDFLARYPLLRLELDI 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N  + +  +  D AIR+    ++ + I R+L        AAP +++      +  +L +
Sbjct: 126 NNHPVSLIGERIDVAIRITDNPEAGA-IARRLGVCRSLLCAAPGWMRQHGPLTTPDDLQR 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS------IMQYCVLGSGIA 242
           HN + +     +     +W  +      + R + + VN  LS      +++  V G GIA
Sbjct: 185 HNCLLYSHFASQ-----HWQFS----DAQGREASVAVNGNLSAGISSLLLEAAVAGCGIA 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           +LP+   +    +  L  ++ +    + +VY  Y
Sbjct: 236 MLPELEARGAIASGTLEVVLPEWTPKALSVYGIY 269


>gi|319760905|ref|YP_004124842.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330822809|ref|YP_004386112.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317115466|gb|ADU97954.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329308181|gb|AEB82596.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 307

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 129/268 (48%), Gaps = 20/268 (7%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +R+F  +A S + T AA +  +++S++SR++  LE E G +L  R  R + LT+ 
Sbjct: 1   MDLNLVRMFIAIAESRNLTDAARRSGMTRSNVSRRLKALEREYGAQLLRRTTRHVELTQA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+    +  ++L+  Q ++++     SG++R+     LG   L+  + EF   +P++
Sbjct: 61  GRILYGHCQQAMNELQDAQRKIEQMHRTVSGEIRVRIPTGLGHFYLKPLILEFCKNHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQR---KLVTIHMHAYAAPHYLK---- 175
           Q++L+++++  D+     D AI     I S+ L+     K+  I       P YL+    
Sbjct: 121 QLRLVINDQIHDLVASKVDLAIH----ITSAPLVDHVATKVCDIRWCLVCTPQYLQQHAL 176

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           +  +P+ +++      +  G  +     +F       + + +   S +Q   Y  +    
Sbjct: 177 HLEQPVDLKQARLIAPLALGQRV-----EFTGPGGAGKVLVQHGAS-IQSGDYQFLFNAA 230

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIME 260
             G GIALLP Y V +     +LVR+++
Sbjct: 231 SQGLGIALLPSYAVCEALKRGDLVRVLQ 258


>gi|288935416|ref|YP_003439475.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890125|gb|ADC58443.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 303

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 132/292 (45%), Gaps = 44/292 (15%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +++F  +  +GSF  AAE L + + ++++ +  LE E G++L  R  R L LT +G 
Sbjct: 6   FENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLTPEGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSV--KP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           + +R +  +  + +    +L ES    +P  G+LR+   I   + L+  +L +F   +P+
Sbjct: 66  EFYRRSKPLLSQAD----DLLESFAPDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHPE 121

Query: 122 IQIQLILDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++I  +L + D+  D+  D  DC +R+   ++    + R L  + +   A+P YL     
Sbjct: 122 VEI--VLSSSDVRRDMLRDGLDCLLRVGD-LEDGDYVARSLGEVALTTCASPGYLARYGV 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL-- 237
           P ++++L  H  +             NW+ +  R I   R    +    ++I    VL  
Sbjct: 179 PATLEDLQSHLAV-------------NWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDN 225

Query: 238 -----GSGIA----------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYP 274
                 +G+A           L  YI  D+  LV I+ D   P   +   YP
Sbjct: 226 SEVFTAAGLAGLGMLQGMRFFLQPYI--DSGQLVEILPDFPAPRRPLSLLYP 275


>gi|221200475|ref|ZP_03573517.1| HTH-type transcriptional activator AmpR [Burkholderia multivorans
           CGD2M]
 gi|221206155|ref|ZP_03579169.1| HTH-type transcriptional activator AmpR [Burkholderia multivorans
           CGD2]
 gi|221174167|gb|EEE06600.1| HTH-type transcriptional activator AmpR [Burkholderia multivorans
           CGD2]
 gi|221179816|gb|EEE12221.1| HTH-type transcriptional activator AmpR [Burkholderia multivorans
           CGD2M]
          Length = 300

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 111/241 (46%), Gaps = 14/241 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT A  +L ++Q+++S+Q+  LE  +G  LF R  RGL LT++G  
Sbjct: 11  NALRAFESSARHLNFTRAGLELSVTQAAVSQQVRALEERLGCALFTRLPRGLDLTDEGRA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+ + ++ET   +     ++    L +  T  LG   L   LK F   +P ++++
Sbjct: 71  LLPVLSDAFSRIETVLQQFDGGRLRQVLTLGVVGTFALG--WLMPRLKRFRDTHPFVELR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N  +D + +  D AIR  +    ++  +R L    + A  AP   +   +P    +
Sbjct: 129 LRTHNNVVDPAAEGLDFAIRFGQGNWPATRNER-LFDAPLTALCAPDIARRLTQP---AD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L+       +      WL   D    EP  ++    +S   +++  + G GIAL 
Sbjct: 185 LAHETLL-------RSYRTDEWLGWFDAARLEPWTVNGPVFDSSRLMVEAAMQGVGIALA 237

Query: 245 P 245
           P
Sbjct: 238 P 238


>gi|194291125|ref|YP_002007032.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193224960|emb|CAQ70971.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 336

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 128/291 (43%), Gaps = 17/291 (5%)

Query: 6   DKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           DKL+    F  V   GS   AA   +++   I R+I+ LE  +G+KL +R  R + +TEQ
Sbjct: 32  DKLKQIEAFIAVVEHGSMAAAALTQNVTPVMIGRRINALEARIGVKLLHRSTRRIAVTEQ 91

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+       +    L+  ++ + E   K +G L ++     G+  +  +   FL   P++
Sbjct: 92  GAVFMEQCKKALADLDRAEMLIAEGKHKATGHLIVSAPAAFGRKHVAPHAPAFLASNPEV 151

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI   L ++ +D+  +  D  IR+   I   + +  KL +        P Y      P +
Sbjct: 152 QISFNLTDRVVDLVREGYDVGIRIGGAI-DPNFVAIKLASNKRVVCGTPAYFAKYGVPQT 210

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           + +L +HN + F +L  +  +   W  + +      R++  L  N    + ++   G G+
Sbjct: 211 LDDLAQHNCLAF-NL--QGGQQRGWYFSQNGKTVTVRVNGNLDCNDGELLHRWTGEGLGL 267

Query: 242 A------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
                  +LP     ++  L+ ++++   P++ +   YP+      K++ F
Sbjct: 268 GWRSTWEILPQL---ESGELITVLDEYALPAYDILAVYPQQRPVPAKIRFF 315


>gi|241204208|ref|YP_002975304.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858098|gb|ACS55765.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 295

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 125/289 (43%), Gaps = 17/289 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VAR  SF  A E+  ++ S++S  +  LE  +GI+L  R  R ++LTE G  L
Sbjct: 8   ELAAFAAVARHKSFRKAGEERGVTASAVSHAVLNLEDRIGIRLLNRTTRSVSLTEAGELL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                  + ++      L      P GK+RI     +G  ++   +   L   P++Q+++
Sbjct: 68  ISHLDPAFGEMAAALDALNRYRDTPFGKVRINVPNSIGPFVIGRVIGPLLKKNPNLQLEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +DI  +  D  IR  + +    +  R    I +    +P Y +   +  +  EL
Sbjct: 128 NATDRLVDIVEEGFDAGIRFGERVTEGMIALRIKPRIRLVVVGSPAYFETRPKLATPHEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD------RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +H  I   ++ P     + W    D      +P G      L ++ +  +MQ  + G G
Sbjct: 188 KRHLCIQ--NMFPSGAR-YAWEFEKDGQAVSFQPTGP-----LSLDDHELMMQAALGGVG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +A + +  V+    +  L+++++D   P   +Y  YP     +   +AF
Sbjct: 240 LAYVWEPRVEKAIASGELIQVLDDWCQPEEPLYLYYPSRRHMSAGFRAF 288


>gi|162449829|ref|YP_001612196.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161160411|emb|CAN91716.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 312

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 8/277 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  D +   +   V R+ SF+ AA +  +  S++SR+I+ LE+ +G++L  R  R L LT
Sbjct: 5   IDLDLNDAALLVRVVRTRSFSAAARERGVPVSTVSRRIARLESALGVRLLERTTRRLDLT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G             L      ++E   +P G++RI   + LG  +    +  +L  +P
Sbjct: 65  EAGRAYFGHAERAIDDLTRGTHHVRELQSEPRGRVRIVAPVALGAAVASA-VCAYLAKHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCRE 179
            + + L +D++ +D+     D AI       ++  + R+L        YA+P YL+    
Sbjct: 124 RVSVDLEIDSRRVDLLAGGFDIAIVPGHVDDTTDFVARELWRATRKLLYASPSYLEARGV 183

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  I++L +H+ I                    R   EPR     V+   +  +  + G 
Sbjct: 184 PQRIEDLARHDCIAVHATDGMATWTLGQGRRRRRVAFEPR---FYVSESSAAYRATLAGV 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           GIALLP+    ++     LVR+++     +  V   Y
Sbjct: 241 GIALLPEVFCAEDVAAKRLVRVLKGYEAEAGGVSLLY 277


>gi|149910110|ref|ZP_01898757.1| transcriptional regulator, LysR family protein [Moritella sp. PE36]
 gi|149806835|gb|EDM66797.1| transcriptional regulator, LysR family protein [Moritella sp. PE36]
          Length = 304

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 25/298 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F+ + ++GSFT AA  L +S S +S+Q+  LE ++ +KL  R  R  TLT+ G +  
Sbjct: 1   MALFHTLVQTGSFTSAAHTLSVSVSHVSKQLKCLEADLNVKLVQRSTRSFTLTDAGQQFA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +EV   ++   + +     + +G LR+  +   G   +   +++F  L+PD+ +++ 
Sbjct: 61  GYCAEVVSSVQNADVMMTNLQDEVTGILRLGVSQSFGTIHIIPAIEQFRKLHPDLHVEVS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   ++  D  D  +   + I    + Q    T  + A A+P YL N   PL   +L+
Sbjct: 121 LFDYKTNMIEDGFDLWLTNIEDIPEGYVAQHLADTCFVLA-ASPDYLMNHTTPLHPNDLE 179

Query: 188 KHNLI-------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            HN +        +G    K  +D    A      G  R+   +     +I    + G G
Sbjct: 180 HHNCLIYQSRERNYGLWSFKQGDD----ALYINVNGNYRVDLAE-----AIRDAAISGWG 230

Query: 241 IALLPDYIVKD---NPNLVRIM-EDVITPSFTVYFCYPE----ALKNTGKLKAFRNFI 290
           IA L  Y++ D      L++++ E   + S   Y  YP       K++  +  F+ +I
Sbjct: 231 IAYLATYLLTDEFRTGKLIQLLPEWQASQSMQFYAVYPSRKHLPKKSSAAITFFKEYI 288


>gi|300693888|ref|YP_003749861.1| glycine cleavage system transcriptional activator (gcva) [Ralstonia
           solanacearum PSI07]
 gi|299075925|emb|CBJ35234.1| putative glycine cleavage system transcriptional activator (gcvA)
           [Ralstonia solanacearum PSI07]
          Length = 313

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 130/288 (45%), Gaps = 16/288 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK-L 66
           L++F   AR  SF+ AAE L ++ S++S QI  LE E+G+ LF R  R +TLT+ G +  
Sbjct: 12  LKMFEAAARLESFSRAAEALCVTHSAVSHQIRALEAELGMALFKRDGRRITLTDPGRRYA 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R+ S ++     T+        +   +L I+         L   +  F+  YP+I ++L
Sbjct: 72  ERIRSALFEIAAATESMRTGDRER---RLVISLLPSFAARWLTPRVGRFIERYPEIDVEL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +   D + D  D  +RL         ++  L  +   A A    L   R P +  +L
Sbjct: 129 QSTHVITDFNRDDVDVVLRLGDGDYPGLFVEPLLDEVFFPACAP--TLNGGRLPKTPADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            K  L+     + +      ++A       EPR   L  ++   +MQ  + G G+ L+  
Sbjct: 187 AKVTLLRSDYEMWRAW----FMAAGLEGWAEPRRGVLYQDAS-QLMQASMEGQGVGLVRR 241

Query: 247 YIVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
            +      N  LVR+  D+  PS +T +F  P+ L +T +++A R ++
Sbjct: 242 SLAMQEVINGRLVRLF-DIDAPSPWTYWFICPQPLLDTFRVRALRAWL 288


>gi|161523594|ref|YP_001578606.1| DNA-binding transcriptional activator GcvA [Burkholderia
           multivorans ATCC 17616]
 gi|189351637|ref|YP_001947265.1| DNA-binding transcriptional activator GcvA [Burkholderia
           multivorans ATCC 17616]
 gi|160341023|gb|ABX14109.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335659|dbj|BAG44729.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia multivorans ATCC 17616]
          Length = 348

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 134/298 (44%), Gaps = 14/298 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F   AR  +F+ AA++L ++  ++S Q+  LE E+G+KLF R+ + L LT+ G +
Sbjct: 10  NAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEDELGVKLFTRNGKRLCLTDAGMR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     +++ S      +L ++         +   +  F+  +P+I ++
Sbjct: 70  YAQQVRTALMMLADATRQVRASDR--DRRLVVSMLSSFAARFVTPRIGTFIERHPEIDVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N   D + D  D AIR          ++  L      A A    L   + P +  +
Sbjct: 128 LQSTNALTDFARDDVDLAIRFGFGSYPGLYVEPLLDEAFFPACAP--TLNGGKLPQTPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  +NL+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 186 LVHYNLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSS-NLLQAAIEGQGIALVR 240

Query: 246 DYIVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +      +  LVR+  D+  PS +  +F  P  L  T +++AFR +I  +   +K 
Sbjct: 241 RSLALHDLLDGRLVRLF-DIDGPSPWHYFFVCPPPLLGTPRVQAFRTWILQEVAQFKL 297


>gi|330967535|gb|EGH67795.1| DNA-binding transcriptional regulator CynR [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 304

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 119/290 (41%), Gaps = 17/290 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R    VA  G+FT AAE LH+SQ ++S+QI  LE+ +G++LF R  R +  T+ G    
Sbjct: 18  IRYLLAVAEHGNFTRAAETLHVSQPALSQQIKQLESNLGVQLFDRSGRSVVPTDAGRVYL 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI--- 124
                   +L+  +  L + +    G+LR+  T    + L+   L  F  LYP + I   
Sbjct: 78  EHARRCLRELDAGKRALNDVNDLSRGQLRLGVTPTFSEYLIAPLLDRFTALYPGVAIIIT 137

Query: 125 QLILDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +L L+     +  D  D AI         I S  L   KL  + M A  A       RE 
Sbjct: 138 ELSLEQITDALISDVLDLAIGFAGNHGSEIDSQPLFDEKLCLV-MAATTA-------REQ 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S   L+  N + F  L P         A       +P +  L+ NS   +++    G  
Sbjct: 190 -STLTLEDLNTLRFALLAPGFATRILLDAWCQMQNFKPNVG-LEANSIAILLKVVAQGRM 247

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +LPD IV++ P L  +      P  TV     +    +    AF   +
Sbjct: 248 ATVLPDAIVREQPGLCEVQTIPPLPGRTVALLRRKNGYQSAAANAFAKLV 297


>gi|304412475|ref|ZP_07394081.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307307134|ref|ZP_07586872.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304349117|gb|EFM13529.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306910373|gb|EFN40804.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 310

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 1/189 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VA  G+ + AA ++ +S +S S  I  LE ++   LF R  R L LT QG +
Sbjct: 4   NDLALFVRVADCGNISAAAAEMDISAASASAAIKRLEKQLDTSLFIRTTRSLRLTVQGER 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      L   +  +     K SG L ++ + D G+NL    L EFLL +P +Q++
Sbjct: 64  YLIHCRRALSDLALGEQAIASDKGKISGTLSLSVSSDFGRNLFVPWLDEFLLDFPQLQVR 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +       D  D A+R  KP Q S+ +   L +I     A+P YL     P S+++
Sbjct: 124 LHLGDNISSFYHDKIDVAVRYGKP-QDSNQVAFPLCSIDRVLCASPEYLAEFGVPDSLEQ 182

Query: 186 LDKHNLITF 194
           L +HN + +
Sbjct: 183 LIEHNCLFY 191


>gi|15891848|ref|NP_357520.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15160334|gb|AAK90305.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 292

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 130/288 (45%), Gaps = 12/288 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L ++Q+++S+Q+ GLE  +G+ LF R  RGL +T +G  
Sbjct: 9   NGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKGLEKRLGVALFQRLPRGLKITAEGEA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +  + ++ TT   ++   V+    L +  T  +G   L   L  F   +P I ++
Sbjct: 69  LLPTVTSSFDQMATTLDRIEAGQVRELLFLGVVGTFAVG--WLLPRLAAFQKRHPFIDVR 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  +N  +D++ +  D AIR  +     +   R L    +     P   +  +EP  +  
Sbjct: 127 VSTNNNRVDMAAEGLDFAIRFGQGSWHGTDAFR-LFEAPLSPLCTPKLAEMLKEPADL-- 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +D   L ++     +  E   W A           + +  ++ L +M+  + G G+AL P
Sbjct: 184 MDATLLRSY-----RADEWSTWFAAAGVSPAAQVNAGIVFDTSLGMMEAALQGLGVALAP 238

Query: 246 DYIVKDNPNLVRIMEDV-ITPSFTVYFCYP-EALKNTGKLKAFRNFIF 291
             +   +     +M+   +T S   Y+    ++   T  ++AF +++ 
Sbjct: 239 PSMFSRHLTSGAVMQPFPVTISLGSYWLTRLQSKPQTSAMQAFSDWLL 286


>gi|34392413|dbj|BAC82529.1| LysR -type regulator [Frateuria sp. ANA-18]
          Length = 312

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 112/253 (44%), Gaps = 6/253 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +R F  + R GS+  AAE   +  S++ R+I  LE + G  LF R   G   +   +
Sbjct: 24  WDLIRAFLALERHGSYEVAAELEGIDDSTLRRRIRLLEQQFGRTLFVRTDSGWRAS---A 80

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH +  +   ++E       +     +G +R+ + +D+               YP +  
Sbjct: 81  DLHALV-DAAQRMEEAARSFSQDHQIGAGVIRV-SVMDVFAQRFSPVFTALSDKYPRLVF 138

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +  +   +++  D  D A+RL +P ++S SL  RKL  + + AYA+  YL+      + 
Sbjct: 139 SITTEAHFVNLEQDQVDIAVRLARPDRTSNSLRVRKLGNVPIGAYASRGYLERVGANANN 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             +++H L+           DF +        G      +Q +S+  +   C LG G+AL
Sbjct: 199 LGVEEHQLLVMNLQFFHQDHDFIYAHLDWSKFGLSGNIRIQADSFAPLALMCALGHGMAL 258

Query: 244 LPDYIVKDNPNLV 256
           LP ++  + P LV
Sbjct: 259 LPRFVAAEYPELV 271


>gi|330812718|ref|YP_004357180.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380826|gb|AEA72176.1| putative transcriptional regulator, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 300

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/295 (20%), Positives = 135/295 (45%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +++VF  VA++  F+ AA +L LS +S++R ++ LE  +G  L  R  R + L+E G 
Sbjct: 4   FQEMQVFLAVAQASGFSAAARRLGLSAASVTRAVAALEQRIGTPLLVRTTRNVYLSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +   L+  +     S V+P G+L I   +  GQ  +   L ++L  +P++ I
Sbjct: 64  RFLEDCRRILSDLQEAEDSAAGSHVQPRGQLTITAPVLFGQLFVTPLLVDYLHRFPEVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +L ++ + +  +  D A+R+ + +  S+L   ++  +      AP +      P   +
Sbjct: 124 NALLLDRTVSLVEEGIDVALRIGE-LPDSNLHAVRVGEVRRVVCGAPDFFARHGRPRHPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++  ++    +    ++ + ++ +  +P+    +  L V +  + +     G G+  +
Sbjct: 183 DLERMPVVASSAI--GQVKSWTFIDS-GQPLAVRPVPRLVVTANQAAITAACQGLGMTRV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             Y V  N     L  ++ D   P   ++  Y        ++++F +F+    R+
Sbjct: 240 LSYQVAGNVAAGELEIVLADFELPPLPIHVVYQGGRNAPTRVRSFVDFVVGALRE 294


>gi|22125586|ref|NP_669009.1| llysr-family transcriptional regulatory protein [Yersinia pestis
           KIM 10]
 gi|45442102|ref|NP_993641.1| LysR family transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807987|ref|YP_651903.1| LysR family transcriptional regulator [Yersinia pestis Antiqua]
 gi|108812253|ref|YP_648020.1| LysR family transcriptional regulator [Yersinia pestis Nepal516]
 gi|145599190|ref|YP_001163266.1| LlysR family transcriptional regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149365594|ref|ZP_01887629.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|153949659|ref|YP_001400489.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|162421388|ref|YP_001606246.1| LysR family substrate-binding transcriptional regulator [Yersinia
           pestis Angola]
 gi|165925471|ref|ZP_02221303.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165937722|ref|ZP_02226284.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166008578|ref|ZP_02229476.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213791|ref|ZP_02239826.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167399534|ref|ZP_02305058.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167422285|ref|ZP_02314038.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426951|ref|ZP_02318704.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167466412|ref|ZP_02331116.1| substrate-binding transcriptional regulator, LysR family protein
           [Yersinia pestis FV-1]
 gi|218929586|ref|YP_002347461.1| putative LysR family transcriptional regulator [Yersinia pestis
           CO92]
 gi|229838029|ref|ZP_04458188.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229898590|ref|ZP_04513735.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229902589|ref|ZP_04517706.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|270490233|ref|ZP_06207307.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294504249|ref|YP_003568311.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|21958491|gb|AAM85260.1|AE013772_2 putative transcriptional regulator LYSR-type [Yersinia pestis KIM
           10]
 gi|45436965|gb|AAS62518.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108775901|gb|ABG18420.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|108779900|gb|ABG13958.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis Antiqua]
 gi|115348197|emb|CAL21125.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis CO92]
 gi|145210886|gb|ABP40293.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis Pestoides F]
 gi|149292007|gb|EDM42081.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|152961154|gb|ABS48615.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354203|gb|ABX88151.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis Angola]
 gi|165914472|gb|EDR33087.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165922580|gb|EDR39731.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165992960|gb|EDR45261.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204965|gb|EDR49445.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166958791|gb|EDR55812.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167052038|gb|EDR63446.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054053|gb|EDR63881.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229680036|gb|EEO76135.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|229688138|gb|EEO80209.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229694395|gb|EEO84442.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|262362368|gb|ACY59089.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis D106004]
 gi|262366325|gb|ACY62882.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis D182038]
 gi|270338737|gb|EFA49514.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294354708|gb|ADE65049.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|320014673|gb|ADV98244.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 313

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 137/298 (45%), Gaps = 31/298 (10%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF +VAR   F  AAE++ +S + +S++++ LE  + + L +R  R +T++E G + +
Sbjct: 10  LRVFLLVARRAGFAAAAEEMGVSPAYVSKRVAILEKTLNVALLHRTTRRVTISEDGERTY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H ++    EL     +P G LR+ ++   G+  +   L      YP ++++  
Sbjct: 70  EWAQRILHDVDQMMDELSAIRQEPQGTLRVISSFGFGRRFVAPALSALAREYPRLELRFD 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ ID+  +  D  IR+   I   +LI  +L        A+P +L+    P ++ EL 
Sbjct: 130 VEDRLIDLVTEGVDLDIRVGDNI-GDNLIACQLAPNRRILCASPDFLQRYGTPKALSELP 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLS------IMQYC 235
                 F  L+ K           D P G  R+        ++V   ++      + Q+C
Sbjct: 189 G-----FACLVIK---------ERDHPFGIWRLHNGTEEQSIKVTGPMASNHGEIVHQWC 234

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GIAL   + VKDN     LV I+ +    S  ++  Y   L  + K++    F+
Sbjct: 235 LDGQGIALRSYWDVKDNIHSGKLVHILPEYFQ-SANIWAVYVTRLAMSAKVRVSVEFL 291


>gi|299771436|ref|YP_003733462.1| transcriptional regulator [Acinetobacter sp. DR1]
 gi|298701524|gb|ADI92089.1| transcriptional regulator [Acinetobacter sp. DR1]
          Length = 287

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 12/250 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  ++   + R+G  + +A+ L +S S++ R+   LE  + + LF R + G TLT  
Sbjct: 1   MNWDDTKILLAIGRTGGLSRSAKLLGISVSTVHRRAVELEKSLNVILFSRDSDGYTLTHV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKL-RIATTIDLGQNLLQGNLKEFLLLYPD 121
           G     +      K E   I ++  + +    L RIA    +GQ LLQ  L    L +P+
Sbjct: 61  GKHFFALA----EKAEEHLIAMERYNGQGQQSLFRIALPELIGQQLLQSKLTALQLKHPN 116

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+++      +D S   AD  +RL +P +S   I R+L  +    Y +  YL +  E  
Sbjct: 117 LQLEISTSVVPVDFSRREADIILRLVRP-ESGRYIIRRLGQLEYGLYCSKDYLASFTEHA 175

Query: 182 SI-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H +I +   +      + +LA   R + +  +  L  ++  S ++  + G G
Sbjct: 176 ETSNDLLNHRIIGWDRSL-----QYTFLAQWIRELTQDAVPALSFDNMHSQLRAVIEGQG 230

Query: 241 IALLPDYIVK 250
           +  LP ++ K
Sbjct: 231 VTALPCFVAK 240


>gi|294676880|ref|YP_003577495.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294475700|gb|ADE85088.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB
           1003]
          Length = 288

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 111/254 (43%), Gaps = 31/254 (12%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD +R+F  +AR G+   AA +L L  ++ISR+I  +E  +G+ LF R   G  LT+QG
Sbjct: 5   NWDDIRLFLALAREGTLQGAARRLGLGVATISRRIDRMEATLGLPLFLRRQTGHELTDQG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQE------SSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           + L         + E  ++ LQE      + V+  G +R+A+   L   ++   L   L 
Sbjct: 65  AAL-------LPRAEAMELALQEMRREAGAQVEIRGLVRLASIESLVAPVVLPALGPLLA 117

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P + +++      +++    AD A+R+  P +  +L  R+L  +    Y         
Sbjct: 118 ANPGLDVEVHWGTATVNLHRHDADLALRMVPP-ERGNLTVRRLAQMGFGLYGPAEGAPPA 176

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R             +T+ D  P       W A      G      L +N+  + +Q    
Sbjct: 177 RH------------VTWPD-APSLAVPLAWSAA----FGARTAPRLALNTLTAQVQAVRD 219

Query: 238 GSGIALLPDYIVKD 251
           G G+A+LP ++ ++
Sbjct: 220 GLGVAVLPHFLARE 233


>gi|167905674|ref|ZP_02492879.1| LysR family regulatory protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 290

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 123/298 (41%), Gaps = 29/298 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 4   LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++  S + +G   + T        L   L +     P + ++ +
Sbjct: 64  AAVRQSLDALRAATADIR--SRRANGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVR-V 120

Query: 128 LDNKDIDISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHY-----LKNCR 178
           + ++DID   ++ D AI           S+ L Q  +  +   A+   H          R
Sbjct: 121 VTSQDIDPQREHTDVAILFGAGDWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLLR 180

Query: 179 EP-LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P L +Q       + + D       D + LA    P G      L  NSY  ++Q  ++
Sbjct: 181 APLLHVQPTRPERWLAWRDWF-----DAHGLAAPPEPHG------LTFNSYSLVIQAALM 229

Query: 238 GSGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G+AL    +V D P     LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 230 NQGVALGWAPLV-DTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 286


>gi|254284677|ref|ZP_04959644.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|150425462|gb|EDN17238.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
          Length = 307

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 135/312 (43%), Gaps = 49/312 (15%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT  G +  
Sbjct: 18  MRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTAAGEEAL 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P +   ++
Sbjct: 78  QRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQVHFDVL 137

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI-QE 185
             ++   +  +  D A+R  ++P    +LI R+L+ + M   A   YL     P+ + Q+
Sbjct: 138 ASDRFSQLVDERVDIALRFTQQP--DENLIARRLLEVGMVVCATQEYLAQ-HAPIGLPQD 194

Query: 186 LDKHNLITF-----GDLIPKCMEDF----------NWLATVDRPI----GEPRISCLQVN 226
           L  HN +        D + K  E F          N + T+ R      G  R+ C   N
Sbjct: 195 LAHHNCLVHISGNKWDFV-KNNEQFSVLVNGNIRANDMGTLCRAALNHKGVIRLPCDLAN 253

Query: 227 SYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             L        G   ALLPDY +               PS +++  Y   L  + +    
Sbjct: 254 PLLRA------GQLQALLPDYYL---------------PSSSIWAVY---LSRSYQTPLV 289

Query: 287 RNFIFLKARDWK 298
           R FI   A  W+
Sbjct: 290 RQFIDFLAERWQ 301


>gi|115361197|ref|YP_778334.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286525|gb|ABI92000.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 306

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 123/300 (41%), Gaps = 36/300 (12%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR G+ + AA++LH++ S++S QI  LE+ +G+ LF R    + LT +G  
Sbjct: 23  NPLRAFEAAARCGTVSAAADELHVTASAVSHQIRILESTLGVALFVRSKARVKLTPEGEA 82

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       +  +    + L   +   +G L ++T + L    L  ++ +FL  YP I ++
Sbjct: 83  LLEPVGAAFDMIANATVRLDSPAA--AGDLVVSTPLSLTSRWLARHIGDFLERYPGIHLK 140

Query: 126 LILDN-------KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +I  N        D+D+ + Y +   R R+           L    +    +P  +    
Sbjct: 141 VIPSNDDRETYSPDVDVCIRYGEGNWRNRR--------VELLAHPALFPVVSPALMNGPD 192

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQ 233
               +Q+L    L         C    +W+     A  D+    P I  L++ +    ++
Sbjct: 193 AIRKVQDLAGRTLF--------CEHAGSWMRWLAEANADK---LPGIRILEIGNAHIGVE 241

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V G G+AL     V+D   +  LVR     +      Y      L ++  + AF  ++
Sbjct: 242 AAVHGQGVALGDSLSVRDDLLDGTLVRPFSAAVPSRHAYYLVTRHELADSPLVTAFTTWL 301


>gi|329295668|ref|ZP_08253004.1| DNA-binding transcriptional regulator IlvY [Plautia stali symbiont]
          Length = 293

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 122/262 (46%), Gaps = 14/262 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L++F  +A S  F   A  +H+S S++SRQI  LE +VG  LF R  R +TLTE 
Sbjct: 1   MDLRDLKLFLHLAESCHFGRTARAMHVSPSTLSRQIQRLEEDVGHALFLRDNRTVTLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +   +   + +  +  +  +    SG+LR+  ++    + L   L  F   +P +
Sbjct: 61  GERLRQFAQQTLLQYQQLRHVMDLNGPSLSGELRLFCSVTAAYSHLPPILDRFRAEHPQV 120

Query: 123 QIQLILDNKDIDISM---DYADCAIRLRKPIQSSSL--IQRKLVTIHMHAYAAPHYLKNC 177
           +I+L   +    I M     AD AI  R     +S+      L+ + + A A P  +++ 
Sbjct: 121 EIKLTTGDAADAIEMVQSGEADLAIAGRPESLPASIDFTPLGLIPLALIAPALPCPVRS- 179

Query: 178 REPLSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               + QE    + I F   D  P   +   W       I  P+I    V+ + +I+   
Sbjct: 180 ---QATQEQPDWSQIPFILPDQGPARRDIDIWFRR--HRIANPQIYA-TVSGHEAIVSMV 233

Query: 236 VLGSGIALLPDYIVKDNPNLVR 257
            LG GIALLPD +++++P  VR
Sbjct: 234 ALGCGIALLPDVVLENSPEPVR 255


>gi|299541867|ref|ZP_07052190.1| putative HTH-type transcriptional regulator [Lysinibacillus
           fusiformis ZC1]
 gi|298725605|gb|EFI66246.1| putative HTH-type transcriptional regulator [Lysinibacillus
           fusiformis ZC1]
          Length = 305

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 74/122 (60%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D  RVF VVA++ SF+ AA+ L+++Q ++S+ +  LE E+G +LF R  +G+TLT +GS 
Sbjct: 6   DLYRVFSVVAKNNSFSSAAKDLYMTQPAVSQAMMQLENELGTRLFNRTPKGVTLTTEGSL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   T+     L+  + +L E     +G+L+I     + +  L   L+ F  +YP+I++Q
Sbjct: 66  LFEYTNSALGLLDAGEEKLLEFKNLTTGQLKIGVGDTISRFFLMPYLEAFHTMYPNIKLQ 125

Query: 126 LI 127
           ++
Sbjct: 126 ML 127


>gi|170701802|ref|ZP_02892735.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133281|gb|EDT01676.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 296

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 14/241 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  +FT A  +L ++Q+++S+Q+  LE  +G  LF R  RGL LT++G  
Sbjct: 11  NALRAFESSARHLNFTRAGLELSVTQAAVSQQVRSLEERLGCALFTRLPRGLGLTDEGRA 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  V S+ + ++ET   +           L    T  +G   L   LK F   +P ++++
Sbjct: 71  LLPVLSDAFSRIETVLKQFDGGRFHEVLTLGAVGTFAIGW--LMPRLKRFGDTHPFVELR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +N  +D++ +  D AIR  +    ++  +R L+   + A  AP   +    P    +
Sbjct: 129 LRTNNNVVDLAAEGLDFAIRFGEGNWPATRNER-LLDAPLTALCAPEIARRLAAP---AD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALL 244
           L    L+       +      WL   D    EP  ++    +S   +++  + G+GIAL 
Sbjct: 185 LANETLL-------RSYRTDEWLGWFDAAQLEPWSVNGPVFDSSRLMVEAAMQGAGIALA 237

Query: 245 P 245
           P
Sbjct: 238 P 238


>gi|169795901|ref|YP_001713694.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157402|ref|YP_002319447.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483389|ref|YP_002325602.1| Putative transcriptional regulator [Acinetobacter baumannii
           AB307-0294]
 gi|301344921|ref|ZP_07225662.1| Putative transcriptional regulator [Acinetobacter baumannii AB056]
 gi|301512411|ref|ZP_07237648.1| Putative transcriptional regulator [Acinetobacter baumannii AB058]
 gi|301595371|ref|ZP_07240379.1| Putative transcriptional regulator [Acinetobacter baumannii AB059]
 gi|332854436|ref|ZP_08435368.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332868456|ref|ZP_08438169.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169148828|emb|CAM86697.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|213056562|gb|ACJ41464.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213987809|gb|ACJ58108.1| Putative transcriptional regulator [Acinetobacter baumannii
           AB307-0294]
 gi|332728012|gb|EGJ59404.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332733381|gb|EGJ64567.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 299

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 5/247 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F VVA+  SFT AA +L  SQS+IS+ +  LE  +GIKL  R  R +  T
Sbjct: 1   MKENLNDLHTFMVVAQERSFTRAAAKLRTSQSAISQTLRNLEDRIGIKLLSRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L  +      ++E    ++      P+G LRI+      Q++L   +++ +  +P
Sbjct: 61  EAGEYLLNLLQPAIEEIENGINQISALKNDPAGTLRISADEYGIQSVLWPAVEKVIQQFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCRE 179
            I +++I D   +DI     D  +R R  + S  +I  ++   I M   A   +L     
Sbjct: 121 KISVEIISDYGLVDIVQGRFDAGLR-RGGLVSKDMIALQVSKPIQMLTVATKEFLARYGH 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS-IMQYCVLG 238
           P   ++L ++  I     +P   E + W  T         ++   V + LS ++Q    G
Sbjct: 180 PKHPKDLVEYQCINL--RLPTHGELYRWQFTKQGKTQIITVNAKIVFTTLSPVLQAARSG 237

Query: 239 SGIALLP 245
            GIA LP
Sbjct: 238 VGIAYLP 244


>gi|327479104|gb|AEA82414.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166]
          Length = 300

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 128/296 (43%), Gaps = 18/296 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   AR  SFT AA++L L+QS+I RQI GLE  +G+ LF R  RG+ LT  G    R 
Sbjct: 13  AFEAAARHESFTRAADELALTQSAICRQIGGLEEFLGLALFRRSRRGVKLTAAGQSYARR 72

Query: 70  TSEVYHKLE--TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +     +E  T  +  Q+ ++     L +A     G   L   L+ F  L+P+I + L 
Sbjct: 73  IAAQLDAVERDTLSVMGQQGAM----SLELAVVPTFGTQWLVPRLRHFQALHPEITVNLT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +    +    D AI       S +     L+   +    +P  L++  +P + Q L 
Sbjct: 129 NRTRPFLFADTEFDAAIYFGDADWSGTEAH-YLMPEDLQPVCSPALLRDG-QPFTTQALA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +  L+          + F+ L   V R +  PR+    +     + Q    G G+AL+P 
Sbjct: 187 ELPLLQQTTRPYAWRQWFDSLGLKVARDMTGPRLELFSM-----LAQAAEHGMGVALIPP 241

Query: 247 YIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           ++++      R++        + +   Y   PE    +  L AFR+++  +A+ W+
Sbjct: 242 FLIQRELAEGRLVLAHPHAYRSETRAYYLMIPERKVESAGLVAFRDWLKDEAKVWR 297


>gi|167842070|ref|ZP_02468754.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 292

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 122/293 (41%), Gaps = 22/293 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR GS + AA++LH++ S++S QI  +E+ +G+ LF R    + LT QG  
Sbjct: 9   NPLRAFEAAARRGSVSAAADELHVTASAVSHQIRIVESTLGVTLFVRSKTRVKLTPQGEA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       ++ +    + L   +    G L ++T + L    L   + +FL  YP I ++
Sbjct: 69  LLEPVGTAFNMIANATVRLDSPAA--VGDLVVSTPLSLASRWLARRIGDFLERYPGIHLK 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I  N D ++     D  IR  +    +  ++  L    +    +P  +        +Q+
Sbjct: 127 VIPSNDDREVYSQDVDVCIRYGEGNWRNRRVE-LLSHPALFPVVSPALMNGPDAIRKVQD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWL-----ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L    L         C    +W+     A  D+    P I  L++ +    ++      G
Sbjct: 186 LSGRPLF--------CEHSGSWMRWLAEANADK---LPDIRILEIGNAHIGVEAAARRQG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +AL     V+D   +  LVR     +   +  Y      L +T  + AF +++
Sbjct: 235 VALGDSLSVRDDLIDGTLVRPFSAAVPARYAYYLVARHELADTPLVTAFTSWL 287


>gi|238785906|ref|ZP_04629872.1| LysR-family transcriptional regulator [Yersinia bercovieri ATCC
           43970]
 gi|238713175|gb|EEQ05221.1| LysR-family transcriptional regulator [Yersinia bercovieri ATCC
           43970]
          Length = 301

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 120/269 (44%), Gaps = 20/269 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +  V   G F+ AA  L L +S +SR+++ LE  +G++L  R  R   +TE G
Sbjct: 3   DLNDLYYYAEVVEHGGFSAAARVLGLPKSKLSRRLALLEDRLGVRLIQRSTRRFAVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  +    Q  +  +  +P G +RI   + L Q  +   L +F+   P + 
Sbjct: 63  RTYYEHCKAMLEEARAAQESIDLTRAEPRGVVRITCPVALLQTTVSSMLADFMASCPLVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P+Q+S L+ + L        A+P  +   R+   
Sbjct: 123 LHLEATNRQVDLVAEAIDIAIRVRPPPLQNSDLVLKVLGNRCQCLVASPELIT--RQGAV 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-------EPRISCLQVNSYLSIMQYC 235
               D     + G   P+  ++F W   +D P G       +PR+    + +  S  Q  
Sbjct: 181 TAPADLSGWPSLGLGQPQ--QEFIW--RLDGPEGAHAAIYHQPRLVTADMTTLRSAAQR- 235

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMED 261
             G G+  LP  +V +     +LVR++ D
Sbjct: 236 --GVGVVQLPVMMVAEQLAAGSLVRLLPD 262


>gi|296104314|ref|YP_003614460.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058773|gb|ADF63511.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 304

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 25/291 (8%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  + SFT AA  L +S+SS+SR IS LE  +G  L  R  R + +TE G   ++ 
Sbjct: 12  VFARVVETLSFTEAALSLGMSKSSVSRDISTLEKRIGAMLLKRTTRKIEITELGLSYYQH 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++ ++L   +  +++   +P+G ++I   +  G+  +   L  +L       + L L 
Sbjct: 72  CFKILNELRAAERFIRDYYEEPAGTIKILAPVTFGKEYVVPALNAYLERNIMANVDLDLS 131

Query: 130 NKDIDISMDYADCAIRLRK--PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +K +DI     D +I + +  P    +   + L +I    YA P  +   R  L+  +L 
Sbjct: 132 DKAVDIKESQYDLSIIVAQDTPTHEHT---KFLCSIQWGLYATPDCIARMRPVLTPGDLP 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-------SCLQVNSYLSIMQYCVLGSG 240
            HN I F  +            TV  P  + +        S  + N+ ++++   + G G
Sbjct: 189 AHNYILFRGVA----------RTVSLPFRKEKQKVNIDVHSRFRSNNSVALISMALSGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           IA LP+YI +++     LVR++       + V+         T  +K F +
Sbjct: 239 IAYLPNYIARESLATGKLVRLLPGWQMDEYKVWLLSKNKNTMTSGIKRFSD 289


>gi|258514181|ref|YP_003190403.1| transcriptional regulator, LysR family [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777886|gb|ACV61780.1| transcriptional regulator, LysR family [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 291

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 72/126 (57%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ LRVF+ VAR  S++ A E+L+LSQ ++SRQIS LE  +G+ LF +  R + LT+ G 
Sbjct: 6   FNYLRVFHSVARHLSYSKAGEELNLSQPAVSRQISSLEKGLGLDLFTQRGRKVVLTDAGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+     +    +     L +      G++R+  +  LG  LL   LKEF   +P+I++
Sbjct: 66  SLYDYADRIMGLAQQAGRTLAQYHDLERGEVRLGVSPVLGCYLLPSILKEFYTRFPNIKV 125

Query: 125 QLILDN 130
            L LD+
Sbjct: 126 SLQLDS 131


>gi|326331221|ref|ZP_08197515.1| LysR-family transcriptional regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325950991|gb|EGD43037.1| LysR-family transcriptional regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 291

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 111/256 (43%), Gaps = 27/256 (10%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A +GSFT AA +LH++Q S+S  + GLE E+G  LF RH RG+ LT  GS L
Sbjct: 5   QLEFFLAIAEAGSFTSAAARLHVAQPSLSYAVRGLERELGGPLFERHGRGVRLTPAGSAL 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 V    E     ++  S +  G+LRI ++       L   L EF  + P  Q+ +
Sbjct: 65  LGPARRVVRGFELAAGAVRSVSDEGFGRLRITSSTVWAVEPLVPVLAEFRRIQPAAQVVV 124

Query: 127 --------ILDN---KDIDISM-DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
                   +LD     + D+ + D A      R P  S  L + +LV +   +  AP   
Sbjct: 125 TDPQHRSDVLDQVRKGEADVGLIDGAPP----RGPFGSHRLAEHELVAVLPPSGEAP--- 177

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
               E + I+EL +  LI      P       +L       G P    ++     SI   
Sbjct: 178 ----EEIGIEELAEVGLIA----TPAGTALRTFLDARLEAAGLPTEVAIETAHVASITPL 229

Query: 235 CVLGSGIALLPDYIVK 250
            +  +G+A+L + + +
Sbjct: 230 VLARAGVAVLTEGMAR 245


>gi|311108052|ref|YP_003980905.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310762741|gb|ADP18190.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           161 [Achromobacter xylosoxidans A8]
          Length = 315

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 112/254 (44%), Gaps = 11/254 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V ++G F  A   L + +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 3   DLNDLYYFVQVVKNGGFAPAGRALGIPKSRLSRRIALLEDRLGVRLIQRSTRSFAVTELG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +    E  Q  +  +  +P G +R++    L    L   +  F++  P + 
Sbjct: 63  QEYYEQCLSMLAGAEAAQEVIDRTRAEPQGTIRMSAPPALIYYFLGDLVARFMVRCPKVH 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   ++ +D+  +  D A+R+R  PI+SS LI + L        A+P   ++   P  
Sbjct: 123 VFLKSFSRPVDVLREGFDIAVRVRFGPIESSDLIMKPLGMSCQCLVASPALARSIALPAD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLG 238
              L +   +  G        + +W   +D P G     P    L  +  L++ Q  + G
Sbjct: 183 PHALSELPTLALG----TEQRESHW--RLDGPDGARIVVPFTPRLVTDDMLALKQAALRG 236

Query: 239 SGIALLPDYIVKDN 252
            G+  LP  +++D 
Sbjct: 237 VGVVALPLLMIRDE 250


>gi|167648799|ref|YP_001686462.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351229|gb|ABZ73964.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 316

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 124/295 (42%), Gaps = 6/295 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +  F  VAR  SFT AA  L ++ +++S  +  LE  +G+ LF R  R + LTE G +
Sbjct: 7   DGVVAFATVARRRSFTAAAADLQVTPAAVSHAVKQLEARIGVALFARTTREVGLTEAGRR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      +E      +     P+G++R+  +      +L   + +F   YPD++++
Sbjct: 67  FLDGARPAVEAMEAATAAARSLGEGPAGRVRLTISRLAFGMVLAPAIADFSRAYPDVRLE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D+  + I  +  D  +RL + I    +  R   +       A   L     P   ++
Sbjct: 127 VAVDDTSVSIIEEGFDVGLRLGEMIAPDMVAVRVSPSFPFVVVGARSLLDRLGRPEHPRD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L     +    +  +   D+ W    D    E  +   + +N +   +   V G G+A  
Sbjct: 187 LKGLPCLNIFQMTRR--RDYRWEFAEDGREYEVSVEGPISINDFGFQVGMAVDGLGLAYA 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P+ +V +      L R+++D +      +  YP  L  +  L+AF  F+  + RD
Sbjct: 245 PEPLVAELIATGRLERVLDDHLAGPTAWHLYYPSRLGASAPLRAFVEFMRGRLRD 299


>gi|332559772|ref|ZP_08414094.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332277484|gb|EGJ22799.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 298

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 120/289 (41%), Gaps = 14/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            +L  F  V R+GS   AA +L L+Q ++SR + GLE ++G+ LF R  + L  T+    
Sbjct: 12  GQLAAFEAVTRTGSTAAAARELDLTQGTVSRLVQGLEEQLGVMLFQRQRKRLRPTQAALA 71

Query: 66  LHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +EV   L+   +  L+ +S    G L +A     G + L   L  FL  +P + I
Sbjct: 72  Y---AAEVRRALDILGRASLRLASDPEGGVLSLAILPTFGTHWLAPRLPGFLKAHPGVTI 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L    K  +   +  D AI    P    +    +L    + A A+P +L     P++  
Sbjct: 129 NLATRLKPFEFEGEEFDAAIHFGSPSWPRA-GHLRLFGEGVVAVASPEFL--AAHPVAGA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
                  +   +  P+      W A        PR   +  + + ++MQ  + G G+ALL
Sbjct: 186 ADLLALPLLTLETRPRGWA--GWFAHHGVAAAVPR--GMVFDQFATMMQAAIHGIGVALL 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+++         LV      +      +  +PE   +   L AFR+++
Sbjct: 242 PEFLAGPALAEGTLVPAHGGPVEGRHAYWLVWPEDRGDHPPLAAFRDWL 290


>gi|330890640|gb|EGH23301.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 302

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 131/300 (43%), Gaps = 27/300 (9%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AA +L L+Q ++ RQI GLE  +G++LF R  RG+ LTE G    R  
Sbjct: 14  FEAAARHESFTKAAHELSLTQGAVCRQIGGLEEFLGVELFRRSRRGVKLTEAGLSYSRRV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL---- 126
           ++    +E   + +     + +  + +A     G   L   LK+F   +PD+ + L    
Sbjct: 74  AQQLDAVERDTLSVM--GQQGANAIELAVVPTFGTQWLLPRLKDFQHKHPDVTVHLTNRT 131

Query: 127 ---ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
              +  + D D ++ + D           S     +L+  +     +P  L N R+ L  
Sbjct: 132 RPFLFADTDFDAAIYFGDA--------DWSGTQSHRLMGENSMPVCSPSSL-NRRDHLQA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL +  L+          + FN     V R +  PR     +     + Q  +   G+A
Sbjct: 183 SELAELPLLQQTTRPYAWRQWFNTQGMDVARDMTGPRYELFSM-----LAQAAMHDMGVA 237

Query: 243 LLPDYIVKDNPNLVR-IMEDVIT-PSFTVY-FCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           L+P ++++   +  R ++ +V + P    Y    PE    +  L AFR+++  +AR+++ 
Sbjct: 238 LIPPFLIQRELHEKRLVIANVCSLPGSKAYHLMIPERKVESASLSAFRDWLVAQARNYQL 297


>gi|194365966|ref|YP_002028576.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348770|gb|ACF51893.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 308

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 132/292 (45%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F+ A   L + +S +SR+I+ LE  +G++L  R  R  ++TE G
Sbjct: 10  DLNDLFYFAMVVEHGGFSQAGRALAMPKSKLSRRIALLEERLGVRLIQRSTRRFSVTEVG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R    +  + E  +  +  S  +P G +R+A  I +    +   L +FL L+P + 
Sbjct: 70  QDYYRHCKAMLVEAEAAEEAIAMSRAEPRGTIRLACPIAILHARIGPMLADFLALHPQVS 129

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R  P++ S L+ R L        A+P  L+    P  
Sbjct: 130 VQLDATNRRVDVVGEGVDVAIRVRPPPLEDSDLVVRVLARRVWCTSASPALLQRLGTPQV 189

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L     +       + + +++    V   +   PR   L  +  +++    V G G+
Sbjct: 190 PADLAVMPTVDLASASQQHVWEYSGPDDVQASVHHRPR---LVSDDMIALRAAAVAGVGL 246

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP  ++ D   +  L+ ++ + +     V+  +P      G L A R  I
Sbjct: 247 LMLPRMMITDELESGALLPVLPEWVPKHGIVHAVFP---SRRGLLPAVRALI 295


>gi|83717422|ref|YP_440303.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651247|gb|ABC35311.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 302

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 125/300 (41%), Gaps = 28/300 (9%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSF  AAE   +S + ++++I  +E  +G +L +R  R   L++ G    
Sbjct: 10  MEMFVRVVECGSFAAAAEASQVSATMVAKRIQAIEARLGARLLHRTTRRQQLSDVGQLYF 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++E  +    E    PSG LRI   +  G   L   L E++ L+P +++ L 
Sbjct: 70  ERCRRALAEVELAESSAAELHATPSGVLRIVAPVGFGSYSLVPALAEYMALHPQVRVDLT 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN          +  + + + I +  L+ R L        AAP YL     P   ++L 
Sbjct: 130 LDNDPPRFWQGDFELGVHIGE-IDAPGLVARPLKPYRRQLAAAPAYLARHGTPKRPEQLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPRISCLQ----VNSYLSIMQYCVLG 238
           +H           C+    W    DR     P GE R   ++     N   ++    + G
Sbjct: 189 EH----------VCLGLSYWRRR-DRWRLVGPRGEVRDVAVRGGFTANHGDALRVAALQG 237

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLK 293
            GI L P  ++  +    R++   + P+++     +Y  Y +  + T KL++  +F+  +
Sbjct: 238 LGIVLQPQAVLTGDLAAGRLVP--VLPAWSLAPSPMYLVYAQDRRPTAKLRSAIDFLLAQ 295


>gi|121606794|ref|YP_984123.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595763|gb|ABM39202.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 312

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 123/285 (43%), Gaps = 9/285 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VA++ SF+  A +  +  SS++RQI  LE ++ + LF R  R L +T+ G  
Sbjct: 8   ENLSMFVDVAQARSFSVVARRQGMVASSVARQIDALEQDLKVALFTRSTRALVMTDAGQL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     ++   +   + E+     K  G LR++     G+  +  +L      +PD++++
Sbjct: 68  LFDRAVKLLSDMTEVRGEVVSLEQKVQGLLRVSCVPAFGRRHVVPHLGSLFEKHPDLRVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  + +D  ++  D  IR+  P   SS+I +++        A+P YL+    P    E
Sbjct: 128 LELTERVVDAVLERFDLVIRV-GPQPDSSMISQRIGNQRYIVGASPAYLERHGHPTHFDE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H LI              W   V      P     + +   +       G GIAL+P
Sbjct: 187 LARHRLIDR----QHNTAARGWRELVGHNGLLPAQFAFECDDCDARRLSAAQGLGIALMP 242

Query: 246 DYIVKDNPNLVRIME----DVITPSFTVYFCYPEALKNTGKLKAF 286
           ++ + ++    R++E     +     +  F    A +   K +AF
Sbjct: 243 NWAIGEDLAAGRLVELELAGLAAQPVSGIFLMRAAPRANSKTRAF 287


>gi|315182146|gb|ADT89059.1| LysR family transcriptional regulator [Vibrio furnissii NCTC 11218]
          Length = 295

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 132/281 (46%), Gaps = 23/281 (8%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F   A   +FT AA+ L+L+Q +ISRQI  LE  +G+KLF+RHARGL+LT+QG K  
Sbjct: 9   LQAFLATAEHLNFTRAADALNLTQGAISRQILALEELLGVKLFFRHARGLSLTQQGVKFV 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSG-KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               ++ H+L   ++ + + S  PS  KL   + +      L   L  F   +PDI ++L
Sbjct: 69  PHAEDILHRL---RLAIDDVSSTPSTIKLNAPSCV---TAWLLPRLMAFQDAHPDIDVEL 122

Query: 127 ILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               K   D + D  D  I   K  +  S++   L    +     P  L++    LS+ +
Sbjct: 123 TSTIKHHPDPNFDVFDAVISYGKVPKLPSVVSHLLFEERLTPICRPELLQSHGGDLSVMQ 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI----MQYCVLGSGI 241
           L +   +T+   +    E  +W   +    GE  ++  ++N + S     M     G GI
Sbjct: 183 LTQ---LTW---LHANAEQSDWKLWLTHH-GERGLTS-KLNQHFSTLDQAMNAAQQGFGI 234

Query: 242 ALLPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKN 279
           A+    + + +  + R++   +D +    + YF +P+   N
Sbjct: 235 AVGDVTLAEQDLAMKRLVMPFDDTVLSGHSYYFLFPKQSDN 275


>gi|311106819|ref|YP_003979672.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761508|gb|ADP16957.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           114 [Achromobacter xylosoxidans A8]
          Length = 322

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 113/244 (46%), Gaps = 16/244 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA++ SF+ AA  L +  S++SRQ++ LE  VG++L  R+ R + LT+ G    
Sbjct: 20  MELFAEVAKAHSFSRAAAVLGMPTSTVSRQVAELERAVGLRLLSRNTRRVELTDAGRLYF 79

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + E    EL+E    PSG L +        + L   L EF   YP+I++QL 
Sbjct: 80  ERCRRIVAEAEIAHEELREQLEIPSGPLHVQLPAAYALDALMPALVEFGSHYPEIRLQLS 139

Query: 128 LDNKDI-DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +   +  +   +  D AIRL + +  SSL+ R+L  +H   YAAP YL     P    +L
Sbjct: 140 VTGPEFAEHPPEIGDVAIRLGE-LPDSSLVARRLGAVHASLYAAPAYLAARGTPACPADL 198

Query: 187 DKHNLITF----GDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +H+ I      G   P  ++      L  V+   G         N      Q  VLG+G
Sbjct: 199 ARHDCIGLRAGGGQPAPWPLQRGREQLLVPVEHRYG--------ANDACMARQLAVLGAG 250

Query: 241 IALL 244
           IA L
Sbjct: 251 IAAL 254


>gi|254502220|ref|ZP_05114371.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438291|gb|EEE44970.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 293

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 10/257 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W ++R    VAR G+ + AAE L + +++I+R +  LE  +G KLF RHA+G T T+ G 
Sbjct: 4   WTEIRTAARVARLGTVSAAAESLGVHRATINRHVDTLEAAIGGKLFQRHAKGFTPTDLGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R+      + E    + Q       G   I T+I      L   L+ F   +P + I
Sbjct: 64  ELLRIADTADEQFEELHRKAQGQGDALRGDF-IVTSIATYAPTLMLILRAFGDKHPGLTI 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + ++ +  + +    A  A R     ++   + R+   I +  +A   Y+     P    
Sbjct: 123 RFMVSDSLLRLEYGEAHVAFRAGGRPENPDNVVREFERIEIGLFAHQIYIDRYGLPDRTN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL--QVNSYLSIMQYCVLGSGIA 242
           +  KH     G + P     F      + P       C+  + NS  ++ Q  + G+GI 
Sbjct: 183 DFPKHRFA--GTVDPNTRAGFQRWLHENVP-----AECITFRSNSMGTLAQAVLCGNGIG 235

Query: 243 LLPDYIVKDNPNLVRIM 259
            LP     +  +LV I+
Sbjct: 236 FLPREAALERGDLVEIV 252


>gi|254227502|ref|ZP_04920934.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262396232|ref|YP_003288085.1| LysR-family transcriptional regulator [Vibrio sp. Ex25]
 gi|151940114|gb|EDN58940.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262339826|gb|ACY53620.1| LysR-family transcriptional regulator [Vibrio sp. Ex25]
          Length = 295

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 123/284 (43%), Gaps = 15/284 (5%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  V  SGSFT  AE+L +S+  ++R +  +E  +  +L +R  R ++LT  G    R
Sbjct: 8   KVFVDVVYSGSFTATAERLDMSRPMVTRYVEAMENWLQTRLLHRTTRKVSLTTAGE---R 64

Query: 69  VTSEVYHKLETTQIELQESSVKP--SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              ++   L+         +V    SGK+R+A++   G + L   +  F+  +P + I +
Sbjct: 65  SLPQIERWLKQADTLTSNIAVDGELSGKIRLASSTSFGVSQLIPAVNSFMQKHPKVHIDI 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D++    D AIR+       SLI + +        A+P YL+  R     ++L
Sbjct: 125 DLQDSVSDLTEQRIDLAIRIASD-PDPSLIGKPIAVCESVLVASPQYLQTHRAIAHPRDL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +     K  E   W  +         I C L  N   +++   + G GI++LP
Sbjct: 184 SSHDCLGY-----KNFERHVWHLSQGEQFESVGIECRLTSNEATALLHGALQGMGISMLP 238

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            Y+      +  L  ++ D       +Y  Y      +  ++AF
Sbjct: 239 TYLSNIYLQSGQLESVLPDWKPNDLNIYALYSSRKHLSPAVRAF 282


>gi|325123648|gb|ADY83171.1| DNA-binding transcriptional regulator IlvY [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 288

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 116/266 (43%), Gaps = 28/266 (10%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L++F  V   G+   A+ QLH   S+I+ +I  LE E+G  LFYR  + L LT  
Sbjct: 1   MDITQLKMFQTVVECGTMAKASMQLHCVPSNITTRIKQLEEELGAPLFYREGKALKLTPS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQES---SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           G     +  +  HK+     E + S      PSG L+I          L   L ++   +
Sbjct: 61  G----EIFLDYCHKILALCDEAKRSIHPDAPPSGPLKIGAIESSATTRLPNLLAKYHQRF 116

Query: 120 PDIQIQLILDNKD---IDISMDYADCAI---RLRKPIQSS-SLIQRKLVTIHMHAYAAPH 172
           P++ IQ+I        +DIS    D AI    +  P+ +   + Q  +V I  H+    H
Sbjct: 117 PEVSIQIITGTWKQLLVDISQHKLDGAIVAGNIEFPMLNKLGIYQEDMVLIASHSLGEIH 176

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
               C+E L  +E+    + T G      +E++  L  +  PI         + SY +I+
Sbjct: 177 ----CQEDLIGKEI---FMWTEGCPYRAALEEWLKLKNISLPI-------TSITSYATII 222

Query: 233 QYCVLGSGIALLPDYIVKDNPNLVRI 258
                GSG+AL+P  I +   NL  I
Sbjct: 223 GCVSAGSGVALVPKSIYEQYKNLAHI 248


>gi|319787494|ref|YP_004146969.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466006|gb|ADV27738.1| transcriptional regulator, LysR family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 312

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 122/266 (45%), Gaps = 20/266 (7%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
           R  +F HAAE+LHL+ S++S  +  LE+ +G  LF RHARG+TLT +G +L    +    
Sbjct: 19  RHQNFAHAAEELHLTASAVSHHVRKLESLLGSTLFQRHARGVTLTPEGRQLADAATTALA 78

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
            +      L+  +   +  L+I+T   L    L   L  FL  +PDI+++  +D+  +  
Sbjct: 79  DVSAVAANLKPDAG--TRVLKISTVHSLVHCWLLPRLAAFLAAHPDIRLE--IDSTPVFA 134

Query: 136 SMDYA--DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY--LKNCREPLSIQELDKHNL 191
             D    D A+R   P Q   L+   L+   M   A+P    ++  REP  I  L    L
Sbjct: 135 RFDEGGPDLAVRY-GPGQWPGLVAHHLMDDAMFPVASPRLPGVEAIREPRQIATLP---L 190

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
           I+  DL  +   D+   A V R +  P +     ++    ++    G G  L   ++V D
Sbjct: 191 IS--DLTQQGWRDWFRAAGV-RGLELPAMHNFSDSA--DALRAAAFGIGATLARRHLVLD 245

Query: 252 ---NPNLVRIMEDVITPSFTVYFCYP 274
                 LVR+   V+   F+ Y  YP
Sbjct: 246 WLQRGELVRLPGPVMKARFSYYAVYP 271


>gi|319781709|ref|YP_004141185.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167597|gb|ADV11135.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 298

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 119/292 (40%), Gaps = 22/292 (7%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR GSFT AA++L L+Q ++SRQI  LE + G +LF R +R + L+  G    
Sbjct: 14  LAAFEAVARLGSFTAAAQELDLTQGAVSRQIKLLEDQFGRRLFERDSRNVRLSASGEIYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +L    + L   S + SG L +A     G   L   + +F+   PDI I  +
Sbjct: 74  EAVRSALGQLRDAALGLM--SNRHSGMLNLAILPTFGTRWLMPMIPDFVENNPDITINFV 131

Query: 128 LDNKDIDISMDYADCAIRLR---KPIQSSSLIQRKLVTIHMHAYAAPHYL--KNCREPLS 182
                 D + +  D AI       P   S+L+ R+ V        +P +L  +    P  
Sbjct: 132 TRVGRFDFARERLDAAIHYGLPDWPEADSTLLVRETVA----PVVSPEFLAGRAIAAPAD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I  L   ++ T     P    ++     +  P G      +Q   + +  Q C+ G G+A
Sbjct: 188 IGRLPLLHMATR----PGAWTEWFEHQGLSAPTG----PGMQFEQFGTAAQACMAGLGVA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LLP  ++        LV      +      Y   P   +    + +FR+++ 
Sbjct: 240 LLPLILIAGELQRGQLVPAPGQPMQSRSAYYLVVPHDKRGHPPVASFRDWLL 291


>gi|221199890|ref|ZP_03572933.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221207441|ref|ZP_03580450.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221172644|gb|EEE05082.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180129|gb|EEE12533.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 348

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 134/298 (44%), Gaps = 14/298 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F   AR  +F+ AA++L ++  ++S Q+  LE E+G+KLF R+ + L LT+ G +
Sbjct: 10  NAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEDELGVKLFTRNGKRLCLTDAGMR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        L     +++ S      +L ++         +   +  F+  +P+I ++
Sbjct: 70  YAQQVRTALMMLADATRQVRASDR--DRRLVVSMLSSFAARFVTPRIGTFIERHPEIDVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N   D + D  D AIR          ++  L      A A    L   + P +  +
Sbjct: 128 LQSTNALTDFARDDVDLAIRFGFGSYPGLYVEPLLDEAFFPACAP--TLNGGKLPQTPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  +NL+   D + +   D   L T    + EP+   L  +S  +++Q  + G GIAL+ 
Sbjct: 186 LVHYNLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSS-NLLQAAIEGQGIALVR 240

Query: 246 DYIVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +      +  LVR+  D+  PS +  +F  P  L  T +++AFR +I  +   +K 
Sbjct: 241 RSLALHDLLDGRLVRLF-DIDGPSPWHYFFVCPPPLLGTPRVQAFRTWILQEVAQFKL 297


>gi|196039850|ref|ZP_03107153.1| transcriptional regulator, LysR family [Bacillus cereus NVH0597-99]
 gi|196029109|gb|EDX67713.1| transcriptional regulator, LysR family [Bacillus cereus NVH0597-99]
          Length = 300

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 132/286 (46%), Gaps = 26/286 (9%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNSLYP 121

Query: 121 DIQIQLI-LDNKDI--DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++ ++ L   DI   +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITFL-PVQDKEIISTPLYKSELIIVVPTGHQLAE 180

Query: 178 REPLSIQELDKHNLIT------FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
              +SI EL  + LI         +LI    + FN+     +PI       L++++  S+
Sbjct: 181 HNHVSIAELQNYPLILLPKNFFLTELITSHCQKFNF---KPKPI-------LEISTMESL 230

Query: 232 MQYCVLGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCY 273
           +Q      GI +LP    D++   N   ++I     TP+  +   Y
Sbjct: 231 IQMVSKDMGITVLPKPYIDFLQNKNIQAIKIENP--TPTIEIGLIY 274


>gi|328676653|gb|AEB27523.1| Transcriptional regulator [Francisella cf. novicida Fx1]
          Length = 306

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 14/243 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++F      G+ + A  + +LS +SIS +I+ LE     KL  R  R +  T+ G KL
Sbjct: 4   ELKLFVAAINYGNLSAAGREFYLSPASISNKINALEEYYQTKLLIRTTRKIEPTKAGEKL 63

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++  +LE  Q ++Q +     G ++I    DLG+ ++   L EF    P+IQ  +
Sbjct: 64  YITAIKLLEQLENLQEDIQNNENTAEGIIKITIPFDLGKQIILPILDEFKEKNPNIQYDI 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCREPLSIQ 184
            L +  I  +    D AIR    +  S+ I +KLV  +    A+P YL+  N      I 
Sbjct: 124 NLTDDVISYNQFPFDIAIRYGN-LPDSNFIAKKLVDNYRMLCASPEYLQKMNISNINDIN 182

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQV--NSYLSIMQYCVLGS 239
            LD ++ IT     + I K      +L   +    E  I    +  N Y+S  Q C+ G+
Sbjct: 183 MLDNYDFITLKINSNTIKKL-----YLIDHENNKYEVNIKPAYIVNNGYIS-RQMCINGN 236

Query: 240 GIA 242
           GI+
Sbjct: 237 GIS 239


>gi|325527487|gb|EGD04818.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 301

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 132/297 (44%), Gaps = 21/297 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF RH R + LT+ G  
Sbjct: 9   NSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGRPLFERHNRRVELTDAGRG 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGK---LRIATTIDLGQNLLQGNLKEFLLLYPDI 122
                +EV    +  +I L  +     G+   LR++         L   L  F + +P I
Sbjct: 69  ---YLAEVGASFD--RIALATAQQFGHGQQRVLRVSAPATFSLRWLVPKLSSFQVAHPSI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--REP 180
           +++L   N+ I+   D  D  +R   P      +  + ++       AP  L+    R P
Sbjct: 124 EVRLSTSNEPIEKLRDKVDLIVR-GGPQAVDGYVSEEFLSEVRLPVCAPKLLERTPLRTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +    +  T+  + P+      WLA        PR S    + YL+ +Q  + G G
Sbjct: 183 ADLADFTLLHAATYPGMWPE------WLAAAGHANLVPRQSLTLEHFYLT-LQGALDGLG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV--YFCYPEALK-NTGKLKAFRNFIFLKA 294
           +A+ P  +V D+    R+++    P+     YF Y  A + +   ++AF++++ L  
Sbjct: 236 VAMGPIALVADDIAEGRLVQPFSEPALPPWRYFTYVAASRADDDAVRAFKDWLKLAG 292


>gi|146298635|ref|YP_001193226.1| LysR family transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146153053|gb|ABQ03907.1| transcriptional regulator, LysR family [Flavobacterium johnsoniae
           UW101]
          Length = 299

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 98/176 (55%), Gaps = 9/176 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++   +   GS T A ++LHL+QS++S Q+   E ++G  +F R  + L LT+ G K++
Sbjct: 6   LKLIKAIVEEGSITKAIDKLHLTQSALSHQLKEAEYQLGTPIFLRTNKKLVLTKAGEKIY 65

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            + +E+ +KL  T+ ++++      G++RI+T      + L   LK+F LLYP+++++++
Sbjct: 66  ELANEILNKLTETESQIKQMVFGEYGEIRISTECFSSYHWLPSVLKQFHLLYPNVELKIV 125

Query: 128 LDNKDIDI------SMDYADCAIRLR-KPIQSSSLIQRKLVTI--HMHAYAAPHYL 174
            +   I +      ++D A  +  ++   I+ + L Q ++V +    H +A   Y+
Sbjct: 126 TEATHIPLQKLLENTIDIAIVSDTIKDHHIKYTELFQDEVVVVISENHPWAGKKYV 181


>gi|297181644|gb|ADI17827.1| transcriptional regulator [uncultured Rhodospirillales bacterium
           HF0200_01O14]
          Length = 301

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 4/203 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +   L  F  +   GSF  AA+QL ++ S++S +I  LE  + ++L  R  R +  T
Sbjct: 2   MNENISDLAAFCAIIELGSFRAAAKQLRVTPSALSHRIKNLEDSLQVRLLNRTTRSVAAT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L+   S    ++      L +    P+G LR+    +  + +L   +  F    P
Sbjct: 62  DAGRALYDRVSPAMREMSGALQSLDDYRSGPTGTLRLNVPANAARVVLAPAIAGFCRDNP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++++I ++  +DI     D  IR  + +       R   +I     A+P YLK    P
Sbjct: 122 NVRLEIIENDGFVDIVAGGFDAGIRFEETLAPGMSAIRLGPSIRPMVIASPDYLKRHGTP 181

Query: 181 LSIQELDKHNLITF----GDLIP 199
           ++  +L  HN I      G L P
Sbjct: 182 MNPNDLANHNCINLLFPGGKLAP 204


>gi|258623589|ref|ZP_05718584.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258584135|gb|EEW08889.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 296

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 3/186 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT  G +  
Sbjct: 7   MRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTAAGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P +   ++
Sbjct: 67  QRCEQILHQTMELEMRALEQSGSLHGSIRISAPIGLTQNMLLDAVQTFTDLHPQVHFDVL 126

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             ++   +  +  D A+R  ++P    +LI R+L+ + M   A   YL       + Q+L
Sbjct: 127 ASDRFSQLVDERVDIALRFTQQP--DENLIARRLLEVGMVVCATADYLAQHAPIKTPQDL 184

Query: 187 DKHNLI 192
            +HN +
Sbjct: 185 TEHNCL 190


>gi|229592047|ref|YP_002874166.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
 gi|229363913|emb|CAY51419.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
          Length = 307

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 127/296 (42%), Gaps = 18/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F   A  GSF  AA  L L+ +++ + ++ LE  +G++LF R  R L LTE G 
Sbjct: 4   FGSIECFVRSAEGGSFAEAARHLSLTPAAVGKSVAKLEARLGVRLFQRSTRRLALTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 S     ++     L  +  +P G L+++     G   +   L  F+  +PDI  
Sbjct: 64  LFLDEVSGSLTTIQNAVANLASAEGRPVGTLKVSMGTVFGNRYVVPLLGAFMQRFPDISP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+     D AI     +    ++ RKL   H    A+  YL      L+ +
Sbjct: 124 DWHFDNRQVDLIGQGFDAAIGGGFEL-PQGVVARKLTPAHRVLVASKDYLVQRAPVLTPE 182

Query: 185 ELDKHNLITFGDLI--PKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS-- 239
           +L +      G LI  P+     +W L +++R   E R   L+ +  +S  +     S  
Sbjct: 183 DLAR----CAGILIRSPQTGRIRSWQLTSIER---EHRPLVLKPSMTMSDSEAACCASAQ 235

Query: 240 --GIAL--LPDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GIAL  +P  +   D+  +VR++ D       +   Y E     GK +AF +FI
Sbjct: 236 GLGIALVSMPMAVPFLDSGAVVRVLPDWYVDDGNISIYYAEHKLLPGKTRAFVDFI 291


>gi|170693763|ref|ZP_02884920.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141181|gb|EDT09352.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 328

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 1/191 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF      GSF  AA +  LS +   + +S +E ++  +L  R  R L+LT+ G   +
Sbjct: 7   MAVFVAAVDEGSFAAAARRFGLSAAMAGKYVSAIEAQLNARLLQRSTRRLSLTDVGHAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +    E  ++     G LR+A  +  G   L   L  ++  +P + +++ 
Sbjct: 67  ERCKRILDAYDEANREASDAHGIARGVLRVAAPVTFGAMHLGEVLARYMEQFPHVNVEVA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+     D A+R+ + ++ S+LI R+L    M   A+P Y+     P S  +L 
Sbjct: 127 LSDRYVDLLESGVDVAVRIGR-LRDSALIARRLAPCRMVICASPDYIARNGMPRSPDDLR 185

Query: 188 KHNLITFGDLI 198
           +   +TF + +
Sbjct: 186 QAPRLTFSEAV 196


>gi|78067702|ref|YP_370471.1| DNA-binding transcriptional activator GcvA [Burkholderia sp. 383]
 gi|77968447|gb|ABB09827.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 328

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 139/297 (46%), Gaps = 14/297 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F   AR  +F+ AA++L+++  ++S Q+  LE E+G++LF R+ + L LT+ G +
Sbjct: 10  NAIRAFEAAARHENFSRAADELYVTHGAVSHQVRALEEELGVQLFTRNGKRLCLTDAGMR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +        +     +++ S      +L ++         +   +  F+  +P+I ++
Sbjct: 70  YAQQIRTALMVIADATRDVRASDR--DRRLVVSMLSSFAARFITPRIGTFIERHPEIDVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N   D + D  D AIR  +       ++     +   A A    L   + P +  +
Sbjct: 128 LQSTNSLTDFARDDVDIAIRFGQGNYPGLHVEPLFDEVFFPACAP--TLNGGKLPQTPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  +NL+   D + +   D   L T    + EP+   L  +S  +++   + G GIAL+ 
Sbjct: 186 LAHYNLLRSDDELWRPWFDAAGLKT----LTEPKRGILYQDSS-NLLLAAIDGQGIALVR 240

Query: 246 DYI-VKD--NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             + V D  +  +VR+  D+  PS +  +F  P  L NT +++AFR ++  +  ++K
Sbjct: 241 RSLAVHDLLDGRIVRLF-DIDGPSPWHYFFVCPPPLLNTPRVQAFRTWLLQEVAEYK 296


>gi|326797143|ref|YP_004314963.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326547907|gb|ADZ93127.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 300

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 130/289 (44%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  SFT AA +L  +Q +IS+Q+  LE  +   LF R  RG+ LT+ G  L 
Sbjct: 13  LVVFESSARHLSFTAAARELGTTQPAISQQVKALEGYLKTPLFKRVYRGVELTDAGHILL 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T   + ++  T   +++ +  P  ++ +AT        L   L +F   +PDI I+L 
Sbjct: 73  KTTQASFGEIRKTVTYIRKKNKTP--RINVATDFAFSAYWLLPRLPDFRKRHPDIDIRLH 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               ++DI +  AD AI     +  S     KL    ++   +P  L+   E   I +LD
Sbjct: 131 TAQSNVDIGLSDADLAIVFSNGVH-SGFYTDKLFEEDVYPICSPRLLE---EVGPITDLD 186

Query: 188 KHNLITFGDLIPKCMEDF-NW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +   +    L     E +  W  L         P  S ++ ++Y  ++Q  + G G AL 
Sbjct: 187 QITGVPLLKLNAGDEEKWMTWETLFQQHNTSWSPSHSVMEFDNYTLLVQAAIAGQGFALG 246

Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFI 290
              ++ D  + N++  ++   + S   YF   P+ L     +K F+++I
Sbjct: 247 WGSLIDDMIDKNMLVGLQAFRSQSHYGYFTVVPQPLVEDPIVKTFKDWI 295


>gi|323494503|ref|ZP_08099608.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323311230|gb|EGA64389.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 287

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 122/269 (45%), Gaps = 12/269 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  +   GS + AA +L LS+S +S+ +  LE ++G+ L  R  R  TLT  G   
Sbjct: 6   QMSIFAHIVEEGSVSAAALKLDLSKSVVSQHLKNLEQDLGLTLIKRTTRRQTLTATGEAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+         + Q + ++P G++RI     L + L+   + + +  YP ++ +L
Sbjct: 66  YHNCKEINSIANLAWEQAQNAHIEPKGRMRITAPNALMEILVTPVVADLMRQYPKLKPEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I D+K +++     D AIR+ +  ++S+L Q+++          P  L        +  +
Sbjct: 126 ISDDKPLNLMEHDVDLAIRVGRS-KNSNLKQKRIGEFRDVLCGVPELLAGGF--YDVPYI 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H     G  +    E      + +  + E +  C+  NS+ S +     G+GI ++PD
Sbjct: 183 ANH---WQGKFVRHEFES----KSGETKVYEKQADCI-TNSFHSCLALIRSGAGIGIIPD 234

Query: 247 YIVKD-NPNLVRIMEDVITPSFTVYFCYP 274
           +      P +V +M D+  P   VY   P
Sbjct: 235 FCFSQIEPEVVSLMPDMTLPENPVYALNP 263


>gi|295700091|ref|YP_003607984.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439304|gb|ADG18473.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 309

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 121/289 (41%), Gaps = 15/289 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF  VA   SF  AA  L ++ S++S+ +  LE  +G  LF R  R + LTE G +
Sbjct: 13  DGVEVFLSVAEHRSFRGAAAALGVTPSAVSQAVRVLEARIGATLFIRTTRSVGLTEAGER 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                   + +L       +    +PSG LR++    +   LL+  +  F    P+++++
Sbjct: 73  FLARAKPAFEELVAASEVARGLGERPSGLLRLSVPRAVVPILLEPLIASFCEANPEVEVE 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    + ID++ +  D  IRL + + +  +              +P Y      P  I +
Sbjct: 133 ISASKELIDLAAEGFDAGIRLGQFVAADMVAVPLTAPFRFVVVGSPGYFVARNRPEHIDD 192

Query: 186 LDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           L  H  I +    G L    +  FN      +PI          + +L ++     G G+
Sbjct: 193 LRTHACIRWRRSGGAL---ALWSFN---DNGQPIEVAVTGPFIASDFLGMLGAANAGIGL 246

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAF 286
           A LP+ +  +      LVR++ D   P    V+  YP   +   KL+AF
Sbjct: 247 AQLPEPMAAEGLRTGKLVRVL-DAYAPMIPGVFLYYPSRRQIMPKLRAF 294


>gi|170754217|ref|YP_001780286.1| LysR family transcriptional regulator [Clostridium botulinum B1
           str. Okra]
 gi|169119429|gb|ACA43265.1| transcriptional regulator, LysR family [Clostridium botulinum B1
           str. Okra]
          Length = 291

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 12/195 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D  RVF  V    SF+ AA++L+++Q ++S+ I  LE E+ I+LF R  +G+ LT +G 
Sbjct: 5   LDLYRVFGCVGECKSFSKAAKELYMTQPAVSQSIMQLEKELDIRLFTRTPKGVILTNEGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    +     +E  + ++ +S     G L+I       +  L   L+EF + YP++++
Sbjct: 65  ILFEYVTSAISLIEAGEKKMLDSKNLMIGDLKIGVGDTTSKYFLLSYLEEFHIKYPNVKL 124

Query: 125 QLILDNKDIDI-------SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           + IL+   +++        +D A C +    PI+ S+L  +K + I           K  
Sbjct: 125 K-ILNGTTVELCNLVKTGDIDLAICNL----PIEDSALEFKKCMEIQDIFVCGERLNKTI 179

Query: 178 REPLSIQELDKHNLI 192
            EPLS  E+ K  LI
Sbjct: 180 SEPLSFVEISKMPLI 194


>gi|161524666|ref|YP_001579678.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350577|ref|YP_001946205.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160342095|gb|ABX15181.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189334599|dbj|BAG43669.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 313

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 125/285 (43%), Gaps = 11/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+ G      
Sbjct: 20  LFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQDGEIFMAR 79

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP + + L L 
Sbjct: 80  AEALLSAADAARASVGRGRTEPYGRLKVSMSSSFGRQHVTPVIPAFLRRYPSVSLDLRLS 139

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIRL   ++ S+L+ RKL T       +P YL     P    +L +H
Sbjct: 140 DEIVDLVDEGYDVAIRL-GALKDSTLVARKLATNRRVLCCSPAYLAERGTPRHPADLAQH 198

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             +  GD       D+++ AT   P        L  ++  +I +  V G GIA+   + V
Sbjct: 199 ECVILGD-----QRDWSF-ATPQGPFTVRVGGRLVASNGEAIREALVDGFGIAIKSTWDV 252

Query: 250 KD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                +  LV +++D        V+  YP       K  AF  F+
Sbjct: 253 GPLLASGALVTVLDDYPFAEDIAVWAVYPSRAHVPLKTLAFIAFL 297


>gi|115353108|ref|YP_774947.1| DNA-binding transcriptional activator GcvA [Burkholderia ambifaria
           AMMD]
 gi|115283096|gb|ABI88613.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 294

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 112/247 (45%), Gaps = 14/247 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF+ A ++LH++  +ISRQI+G E  +G  +F+R+ + + LT++G +  
Sbjct: 11  LRAFEAAARHESFSAAGDELHVTHGAISRQIAGFEAWLGKPVFHRYGKRVRLTDEGRRYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  +     +L+ +    +  LRI          L   L  F    P+++++L 
Sbjct: 71  DTVRAAFDSIALATEQLRNTGA--ARVLRINALPTFAMKWLLPRLSRFQRDVPNVELKLS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186
             N  +D ++D  D AIR R P    +      +   +    +P  LK  R P++   +L
Sbjct: 129 TSNAPLD-ALDGFDVAIR-RGPGHWPNCTSGHFLDESVIPVCSPALLK--RAPITRADDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H L+   D  P+   D  W A     P G  R S    + +   +Q  V G G+AL P
Sbjct: 185 ARHVLL-HSDTRPEGWRD--WFAAAGVTPKGRKRQS---FDHFYLALQAAVDGLGVALGP 238

Query: 246 DYIVKDN 252
             ++ D 
Sbjct: 239 LPLIDDE 245


>gi|312137616|ref|YP_004004952.1| lysr family transcriptional regulator [Rhodococcus equi 103S]
 gi|325677411|ref|ZP_08157075.1| LysR family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|311886955|emb|CBH46264.1| putative LysR family transcriptional regulator [Rhodococcus equi
           103S]
 gi|325551658|gb|EGD21356.1| LysR family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 298

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 134/294 (45%), Gaps = 19/294 (6%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L V   +AR GS   AA  L L+ +++SR++S LE E+   +  R  +G  LT+ G +
Sbjct: 4   DDLVVLLEIARCGSLVGAASALGLNHATVSRRMSALEAELHAPVLVRGVQGCELTDLGHR 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKP-----SGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           L R   ++   L   +     +S+ P     SG +RIATT   G   +   + +   +  
Sbjct: 64  LLRSCEQIESALTDVR---DLASITPRERELSGLVRIATTEAFGSYFIAPLMADLHRINS 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++++   + +      AD  I + +P+      + KL    +  YA+  Y      P
Sbjct: 121 DLLVEIVTQTR-LSAFGAGADIEIGVGEPVFGRPGAE-KLTDYRLGLYASDAYRAERGMP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+++L+ H+L+ + + + + +ED + L  +    G  +++     S  +     + G+G
Sbjct: 179 TSLEDLEGHSLVYYIEGLLR-VEDLDVLTKL---TGNHKVT-FGSTSVQAQTAATLAGAG 233

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCY-PEALKNTGK---LKAFRNFI 290
           I LLP ++ +  P L R++   +  +     C  P  L+       L+A R  +
Sbjct: 234 IGLLPAFVAEREPTLQRVLPSDVAITLEFSACLAPRRLRRPAAATVLQAIREMV 287


>gi|172061962|ref|YP_001809614.1| DNA-binding transcriptional activator GcvA [Burkholderia ambifaria
           MC40-6]
 gi|171994479|gb|ACB65398.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 294

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 112/247 (45%), Gaps = 14/247 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF+ A ++LH++  +ISRQI+G E  +G  +F+R+ + + LT++G +  
Sbjct: 11  LRAFEAAARHESFSAAGDELHVTHGAISRQIAGFEAWLGKPVFHRYGKRVRLTDEGRRYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  +     +L+ +    +  LRI          L   L  F    P+++++L 
Sbjct: 71  DTVRAAFDSIALATEQLRNTGA--ARVLRINALPTFAMKWLLPRLSRFQRDVPNVELKLS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQEL 186
             N  +D ++D  D AIR R P    +      +   +    +P  LK  R P++   +L
Sbjct: 129 TSNAPLD-ALDGFDVAIR-RGPGHWPNCTSGHFLDESVIPVCSPALLK--RAPITRADDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H L+   D  P+   D  W A     P G  R S    + +   +Q  V G G+AL P
Sbjct: 185 ARHVLL-HSDTRPEGWRD--WFAAAGVTPKGRKRQS---FDHFYLALQAAVDGLGVALGP 238

Query: 246 DYIVKDN 252
             ++ D 
Sbjct: 239 LPLIDDE 245


>gi|329903351|ref|ZP_08273444.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548429|gb|EGF33107.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 305

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 1/188 (0%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +   GSF+ AA    ++ + I R++  LE  +G+KL  R  R + LT +GS  
Sbjct: 6   QLSTFVEIIAKGSFSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIALTAEGSSF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +LE  ++ +   +   SG L I+     G+  +   L  FL  + ++ + L
Sbjct: 66  LEDCQRILAELEQAELAVSAGARAASGHLTISAPAGFGRQHVAPLLPSFLAEHREVSLTL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++  D+  +  D AIR+   +  SS++  KL        A P YLK    P ++ +L
Sbjct: 126 SLNDRIADLLGEGIDVAIRI-AALTDSSMVGVKLAENKRVVVATPAYLKRHGTPQALDQL 184

Query: 187 DKHNLITF 194
             HN +  
Sbjct: 185 TGHNCLAI 192


>gi|330806818|ref|YP_004351280.1| HTH-type transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327374926|gb|AEA66276.1| Putative HTH-type transcriptional regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 305

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 113/266 (42%), Gaps = 29/266 (10%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  S + AAEQLH++  ++SRQ+  LE  +G+ LF +  RGL LT+ G +
Sbjct: 9   NALRAFEATARLNSVSQAAEQLHVTHGAVSRQLKVLEEHLGVSLFIKDGRGLKLTDAGMR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   +++ + +L +   EL +S+        +  +  L        L       PD+++ 
Sbjct: 69  LRDASTDAFERLRSVCAELTQSTA--DAPFVLGCSGSLLARWFIPRLGRLNADLPDLRLH 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L     D+D      D  +   +P   + +   +LV+  +    +PHY+   R    +Q 
Sbjct: 127 LSAGEGDLDPRRPGLDALLVFAEPPWPADMQVYELVSERIGPVMSPHYVGFAR----LQA 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--------CLQVNSYLS----IMQ 233
                L+           D + L T  RP   P  +         L+          +++
Sbjct: 183 APTSALL-----------DESLLHTTSRPQAWPTWAQQNDLDPRALKFGQGFEHLYYLLE 231

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIM 259
             V G G+A+ P+ +V ++    R++
Sbjct: 232 AAVAGLGVAIAPEPLVAEDVRAGRLV 257


>gi|293605888|ref|ZP_06688258.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292815675|gb|EFF74786.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 309

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 123/264 (46%), Gaps = 31/264 (11%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  +G+ + AA +L ++++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDTKSLTLLVEILDAGNLSEAARRLKMTRANVSYHLNQLERSVGMQLVRRTTRHVEATEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL++    +  +L   +  +      P GK+R++     GQ ++   L EF   YPDI
Sbjct: 61  GLKLYQHGRSIQDELVAARESVDTLGKTPQGKVRLSVPSGYGQFVMTPWLLEFKQAYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + ++ +N   D+  D  D A+R + +P Q  +L+ R+L  +   A A+  Y      P 
Sbjct: 121 VLDVLFENSVDDLLRDEVDIAVRIMSEPPQ--NLVARELGQVRYVACASKAYADAKGLPQ 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-------GEPRISCLQVNSYLSIMQY 234
             ++L +  +I+               A + RP+       G+PR   +   + +S   Y
Sbjct: 179 RPEDLAQLPVIS--------------AAVIGRPLRLSAYYGGQPRQHVVLEPTVIS-RNY 223

Query: 235 CVL------GSGIALLPDYIVKDN 252
             L      G G+ ++PDY+V D+
Sbjct: 224 AFLRDAIRAGLGVGVVPDYVVHDD 247


>gi|123442677|ref|YP_001006654.1| transcriptional activator protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089638|emb|CAL12488.1| transcriptional activator protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 294

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 12/241 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F   AR  SFT AA +L+++ ++IS+Q+  LE  +  +LF R +RGL LT +G  
Sbjct: 9   NSLRAFEAAARQLSFTKAAIELNVTHAAISQQVKALEQRLNCRLFIRISRGLVLTTEGEN 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L  + ++ + ++  T        ++   K+R+          L   L++F    P + I 
Sbjct: 69  LLPILNDSFDRIAHTLDRFSAGIMRE--KVRVGVVGAFATGYLLSRLRDFQQHSPHVDIL 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   N  +D+  +  D AIR        +  Q  L    +    AP   K+ R P  +Q 
Sbjct: 127 LSTHNNRVDVVAEGLDYAIRYGNGAWHGTESQ-FLCDAPLAPLCAPSLAKDLRHPTDLQR 185

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
                   F  L     ++++ W A    P+  P    +  +S +S+++      GIAL 
Sbjct: 186 --------FMLLRSYRRDEWSAWFAAAGGPVPSPSQQIMMFDSSVSMLEAAQAEIGIALA 237

Query: 245 P 245
           P
Sbjct: 238 P 238


>gi|70729436|ref|YP_259174.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343735|gb|AAY91341.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 296

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 4/140 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  F  +A +GSF+ A E+LHL+Q +IS++I+GLE ++ ++LF R  R + LTE 
Sbjct: 1   MDLANLNAFIAIAETGSFSGAGERLHLTQPAISKRIAGLEQQLNVRLFDRLGREIGLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++ + L+ T+  L   + + SG+L +AT+  +G + L   L+ F   YP  
Sbjct: 61  GRALLPRAYQIINVLDDTRRALTNLTGEVSGRLTLATSHHIGLHRLPPLLRAFTRRYP-- 118

Query: 123 QIQLILDNKDIDISMDYADC 142
             Q+ LD + +D  + Y + 
Sbjct: 119 --QVALDIQFLDSEVAYEEI 136


>gi|296136955|ref|YP_003644197.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
 gi|295797077|gb|ADG31867.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
          Length = 337

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 116/259 (44%), Gaps = 14/259 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LR F   AR GSFT AA+ L L+QS++SRQI  LE  VG+ LF R    + L+  G
Sbjct: 26  DAGNLRGFEAAARLGSFTAAADALALTQSALSRQIQTLEVSVGVPLFVREGPRVRLSPAG 85

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +   V  +   +L+T    L+ S  +P  ++RI T   L    L   L +F   +PDI 
Sbjct: 86  EQFAVVVRQALQQLDTAVEGLRASQGRP--RVRITTFASLASQWLIPRLGDFQSAHPDID 143

Query: 124 IQLILDNKDIDISMDYADCAIR-------LRKPIQSSSLIQRKLVTIHMHAYA----APH 172
           I +   +   D+     D AIR       L +   ++ L   ++  +   A A    AP 
Sbjct: 144 IAVETFDNLSDLEAGGLDIAIRRLRDDNPLARAPHTTFLFGEQITPVCSPALAQTGRAPG 203

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
            L +    + I ++  H+         + +    W A +  P  EP+   L+ N    ++
Sbjct: 204 ALDDLPRCVWIDDVRIHSAPPIARANLQALSWGGWYAGLGLPQPEPQ-RWLRFNYTYQVI 262

Query: 233 QYCVLGSGIALLPDYIVKD 251
           Q  V G G+A+    +++D
Sbjct: 263 QAAVAGQGVAMGQIGLIRD 281


>gi|261820606|ref|YP_003258712.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604619|gb|ACX87105.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 301

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 23/305 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +   VF  V R+ SF+ AA +L LS + I+++I+ LE+ +G+KLF+R+ R + LT  G +
Sbjct: 9   EDFNVFLTVVRTSSFSAAAVELGLSNAYITKRINILESVLGVKLFHRNTRDIRLTSAG-E 67

Query: 66  LHRVTSEVYHKLETTQIE-LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + R+ +E   +     IE +Q+      G L I+++   G+N L      F    P ++I
Sbjct: 68  VARIQAEELIRNARNSIEKIQDVRNDVIGSLHISSSFGFGKNHLSQPFSFFSKNNPHLKI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +  +D+  +  D  I + +   +     +K+        A+P Y  +   P + +
Sbjct: 128 KLTLTDTKLDLIKEGIDLEIMVGENF-NDRYYAKKIADNKRILCASPTYFIDKDMPTTPE 186

Query: 185 ELDKHNLI-------TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           EL  H+ +       TFG  + +     N L TV R  G+     L  N+   IMQ+ + 
Sbjct: 187 ELANHSCLFLQEKGQTFG--LWRLYNGIN-LQTV-RVNGD-----LSSNNGEIIMQWALA 237

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GIA    +  +   +   L+ I+ D    + +++  YP  L ++ K K    F+    
Sbjct: 238 GHGIAYRSQWDARKYIEKKQLIHILPDYYEQA-SIWAVYPTKLDDSLKTKRCVEFLEEYF 296

Query: 295 RDWKF 299
           RD K 
Sbjct: 297 RDIKL 301


Searching..................................................done


Results from round 2




>gi|254780282|ref|YP_003064695.1| putative transcription regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039959|gb|ACT56755.1| putative transcription regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 299

 Score =  421 bits (1082), Expect = e-116,   Method: Composition-based stats.
 Identities = 299/299 (100%), Positives = 299/299 (100%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT
Sbjct: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP
Sbjct: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP
Sbjct: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG
Sbjct: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF
Sbjct: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299


>gi|315122842|ref|YP_004063331.1| putative transcription regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496244|gb|ADR52843.1| putative transcription regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 298

 Score =  385 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 248/299 (82%), Positives = 267/299 (89%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSFDWDKLRVFYVVA+ GSFT AAEQL+LSQS+ISRQISGLE E+G KLFYRHARGL LT
Sbjct: 1   MSFDWDKLRVFYVVAKFGSFTSAAEQLNLSQSAISRQISGLEAEIGSKLFYRHARGLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQGSKLH V S+V  KLE+ QIELQESS KPSGKLRIATTIDLGQNLLQ + KEFLLLYP
Sbjct: 61  EQGSKLHNVASDVCQKLESIQIELQESSEKPSGKLRIATTIDLGQNLLQDSFKEFLLLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+IQ ILDNKDIDISM YADCAIRLRKP Q SSLIQRKLVTI+MH YAAPHYLK   EP
Sbjct: 121 DIKIQFILDNKDIDISMCYADCAIRLRKPSQ-SSLIQRKLVTINMHVYAAPHYLKRRGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LSIQ+LD H+L+TFGDLIPKCMEDFNWLATV R   EPRIS LQ+NSYLSIMQYC+LGSG
Sbjct: 180 LSIQDLDNHDLLTFGDLIPKCMEDFNWLATVGRAPHEPRISSLQINSYLSIMQYCILGSG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IALLPDYIVKDN N+VR+MEDV  PSF VYFCYPEALKNTGKLKAFR+FI LKA++WKF
Sbjct: 240 IALLPDYIVKDNSNIVRVMEDVSMPSFEVYFCYPEALKNTGKLKAFRDFIVLKAQNWKF 298


>gi|15965319|ref|NP_385672.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307307945|ref|ZP_07587670.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307317176|ref|ZP_07596617.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15074499|emb|CAC46145.1| Transcription regulator LysR family [Sinorhizobium meliloti 1021]
 gi|306897264|gb|EFN28009.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306901561|gb|EFN32164.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 302

 Score =  341 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 172/299 (57%), Positives = 220/299 (73%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VGIKLF+RHARGL LT
Sbjct: 5   MSLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSSLEQDVGIKLFHRHARGLILT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLE+ + +L E++ KPSGKLRI TT+ LGQ  L   ++EF+ LYP
Sbjct: 65  EQGEMLYRTAHDVLMKLESVKAQLSETTDKPSGKLRITTTVGLGQGWLTDKIQEFMSLYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+QLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 125 EIQVQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINKYGEP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +LD H +ITFG+  P  + D NWL    R    PRIS LQ+NS  SI + C+LG G
Sbjct: 184 QSLDDLDNHRIITFGEPAPNYLLDVNWLEIAGRDSDNPRISHLQINSQTSIKRACLLGIG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV  +P L+++      PSF  YFCYP+ LKN  KLK FR++I  KAR+W F
Sbjct: 244 IAMLPDYIVGRDPGLIQLPISADIPSFDTYFCYPDELKNAAKLKVFRDYIVAKARNWNF 302


>gi|227822113|ref|YP_002826084.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
 gi|227341113|gb|ACP25331.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
          Length = 298

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 173/299 (57%), Positives = 221/299 (73%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VGIKLF+RHARGL LT
Sbjct: 1   MSLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGIKLFHRHARGLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   EV  KLE+ + +L E++ KPSGKLRI TT+ LGQ  L   ++EF+ LYP
Sbjct: 61  EQGEMLYRTAHEVLMKLESVKAQLSETTDKPSGKLRITTTVGLGQGWLTDKIQEFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+QLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 121 DVQVQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHIYAAPSYINKNGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SIQ+LD H +ITFG+  P  + D NWL    R    PR+S LQ+NS  SI + C+LG G
Sbjct: 180 QSIQDLDNHRIITFGEPAPNYLLDVNWLEIAGRDPDNPRVSHLQINSQTSIKRACLLGIG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV  +P L+++      PSF  YFCYP+ +KN  KLK FR++I  KAR+W F
Sbjct: 240 IAMLPDYIVGRDPGLIQLPISADIPSFDTYFCYPDEMKNAAKLKVFRDYIVAKARNWNF 298


>gi|209550302|ref|YP_002282219.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536058|gb|ACI55993.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 303

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 168/299 (56%), Positives = 216/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT
Sbjct: 6   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGTKLFHRHARGLILT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++  PSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 66  EQGELLYRTAHDVLLKLETVKMQLTETNETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 126 DVQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++LD H +ITFG+  P  + D NWL    R     RI  LQ+NS  SI +  +LG G
Sbjct: 185 QKIEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRAALLGIG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +A LPDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 245 VACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 303


>gi|150396465|ref|YP_001326932.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027980|gb|ABR60097.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 298

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 172/299 (57%), Positives = 220/299 (73%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VGIKLF+RHARGL LT
Sbjct: 1   MSLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSSLEQDVGIKLFHRHARGLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLE+ + +L E++ KPSGKLRI TT+ LGQ  L   ++EF+ LYP
Sbjct: 61  EQGEMLYRTAHDVLMKLESVKAQLSETTDKPSGKLRITTTVGLGQGWLTDKIQEFMSLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+QLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 121 EIQVQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINKFGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +LD H +ITFG+  P  + D NWL    R    PRIS LQ+NS  SI + C+LG G
Sbjct: 180 QSLDDLDNHRIITFGEPAPNYLLDVNWLEIAGRDSDNPRISHLQINSQTSIKRACLLGIG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV  +P L+++      PSF  YFCYP+ LKN  KLK FR++I  KAR+W F
Sbjct: 240 IAMLPDYIVGRDPGLIQLPISADIPSFDTYFCYPDELKNAAKLKVFRDYIVSKARNWNF 298


>gi|86358578|ref|YP_470470.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|190892727|ref|YP_001979269.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|86282680|gb|ABC91743.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
 gi|190698006|gb|ACE92091.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327193729|gb|EGE60608.1| LysR family transcriptional regulator [Rhizobium etli CNPAF512]
          Length = 298

 Score =  338 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 169/299 (56%), Positives = 217/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT
Sbjct: 1   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGTKLFHRHARGLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++  PSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 61  EQGELLYRTAHDVLLKLETVKMQLTETTETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 121 DVQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++LD H +ITFG+  P  + D NWL    R     RI  LQ+NS  SI + C+LG G
Sbjct: 180 QKIEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRACLLGIG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +A LPDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 240 VACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 298


>gi|116253171|ref|YP_769009.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257819|emb|CAK08917.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 303

 Score =  338 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 168/299 (56%), Positives = 217/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT
Sbjct: 6   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGTKLFHRHARGLILT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++ KPSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 66  EQGELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 126 DVQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++LD H +ITFG+  P  + D NWL    R     RI  LQ+NS  SI +  +LG G
Sbjct: 185 QKVEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRAALLGIG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +A LPDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 245 VACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 303


>gi|241205685|ref|YP_002976781.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859575|gb|ACS57242.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 303

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 167/299 (55%), Positives = 216/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG KLF+RHARGL LT
Sbjct: 6   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEHDVGTKLFHRHARGLILT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++  PSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 66  EQGELLYRTAHDVLLKLETVKMQLTETTETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 126 DVQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++LD H +ITFG+  P  + D NWL    R     RI  LQ+NS  SI +  +LG G
Sbjct: 185 QKVEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRAALLGIG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +A LPDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 245 VACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 303


>gi|325293546|ref|YP_004279410.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325061399|gb|ADY65090.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 300

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 168/299 (56%), Positives = 218/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG+KLF+RHARGL LT
Sbjct: 3   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGVKLFHRHARGLILT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++ KPSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 63  EQGELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTTVGLGQGWLTDKVQEFLQLYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ IQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 123 EMSIQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI++LD H +I+FG+  P  + D NWL    R     RI  LQ+NS  SI + C+LG G
Sbjct: 182 QSIEDLDNHRIISFGEPAPNYLLDVNWLENAGRSSDNTRIPHLQINSQTSIKRACLLGIG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA LPDYIV  +P L+++      PSF  YFCYP+ +KN  KLKAFR+F+  KAR+W F
Sbjct: 242 IACLPDYIVGRDPGLIQLSLAADIPSFDTYFCYPDEMKNAAKLKAFRDFVVAKARNWNF 300


>gi|15889466|ref|NP_355147.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157334|gb|AAK87932.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 300

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 168/299 (56%), Positives = 218/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG+KLF+RHARGL LT
Sbjct: 3   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGVKLFHRHARGLILT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++ KPSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 63  EQGELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTTVGLGQGWLTDKVQEFLQLYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ IQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 123 EMSIQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+++LD H +I+FG+  P  + D NWL    R     RI  LQ+NS  SI + C+LG G
Sbjct: 182 QSVEDLDNHRIISFGEPAPNYLLDVNWLENAGRSSDNTRIPHLQINSQTSIKRACLLGIG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA LPDYIV  +P L+++      PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 242 IACLPDYIVGRDPGLIQLSLAADIPSFDTYFCYPDEMKNAAKLKAFRDFIVAKARNWNF 300


>gi|222086562|ref|YP_002545096.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724010|gb|ACM27166.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 303

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 168/299 (56%), Positives = 219/299 (73%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VGIKLF+RHARGL LT
Sbjct: 6   MPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGIKLFHRHARGLILT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++ KPSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 66  EQGELLYRTAHDVLLKLETVKMQLTETTDKPSGKLRVTTTVGLGQGWLTDKIQEFLQLYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 126 DMQIQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRYGEP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+++LD H +I+FG+  P  + D NWL    R     R+  LQ+NS  SI + C+LG G
Sbjct: 185 QSVEDLDDHRIISFGEPAPNYLLDVNWLEIAGRSSDNKRLPHLQINSQTSIKRACLLGIG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLK FR+F+  KAR W F
Sbjct: 245 IAVLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEMKNAAKLKVFRDFVVAKARKWNF 303


>gi|222149305|ref|YP_002550262.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221736289|gb|ACM37252.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 304

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 165/299 (55%), Positives = 218/299 (72%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  DWDKLR+F+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG+KLF+RHARGL LT
Sbjct: 7   IPLDWDKLRIFHAAAEAGSFTHAADKLHLSQSAISRQVSALEQDVGVKLFHRHARGLILT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLET +++L E++ KPSGKLR+ TT+ LGQ  L   ++EFL LYP
Sbjct: 67  EQGELLYRTAHDVLLKLETVKMQLTETTEKPSGKLRVTTTVGLGQGWLTDKVQEFLQLYP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ IQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP
Sbjct: 127 DMSIQLILDNEELDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRYGEP 185

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++LD H +I+FG+  P  + D NWL    R     RI  LQ+NS  SI + C+LG G
Sbjct: 186 QTIEDLDNHRIISFGEPAPNYLLDVNWLEVAGRSSDNRRIPHLQINSQTSIKRACLLGIG 245

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +A +PDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLK FR+FI  KAR+W F
Sbjct: 246 VACMPDYIVGRDPGLIQLPINAEVPSFDTYFCYPDEMKNAAKLKVFRDFIVSKARNWNF 304


>gi|114704991|ref|ZP_01437899.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Fulvimarina pelagi HTCC2506]
 gi|114539776|gb|EAU42896.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Fulvimarina pelagi HTCC2506]
          Length = 298

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 146/299 (48%), Positives = 204/299 (68%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DWDKLR+F+  A +GSFT A+E L LSQS+ISRQ++ LE+EVG+ LF+RHARGL L+
Sbjct: 1   MALDWDKLRIFHAAAEAGSFTRASENLGLSQSAISRQVAALESEVGVPLFHRHARGLILS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L +  ++V  +LE  +++L E+  +PSGKLR+ TT+ LG   L    KEFL LYP
Sbjct: 61  EQGEMLFQTANDVLQRLEAVRMQLTETKERPSGKLRVTTTVGLGSGWLTERSKEFLELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++QL+ DN++ID++M  AD AIRLR+P Q   LIQR+L T+H+H YAAP Y+     P
Sbjct: 121 DIELQLMFDNEEIDLTMRRADAAIRLRQP-QQPDLIQRRLFTVHLHVYAAPGYITRFGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +LD H +ITFG+  P  + + N L TV    G PR   LQ+N+ ++I      G G
Sbjct: 180 ETIDDLDHHRIITFGEPAPPYLRNLNTLETVGIDNGHPRSPILQINNLIAIRSAIESGIG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           + LLPDY++     LV+I+ ++  P+F  Y CYPE L+N+ KL+ FR+F+  KAR W F
Sbjct: 240 LGLLPDYMIDQRTKLVQILPEIEMPTFDTYLCYPEELRNSAKLRVFRDFLISKARTWTF 298


>gi|110634460|ref|YP_674668.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285444|gb|ABG63503.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 296

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 155/295 (52%), Positives = 207/295 (70%), Gaps = 1/295 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+  A +GSFTHAAE LHLSQS+ISRQ+S LE E+G+ LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAAAAAGSFTHAAESLHLSQSAISRQVSALEQELGVSLFHRHARGLVLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLET ++ L E+  +PSG LR++TT+ LG   L   L EF  LYPDI
Sbjct: 61  GEMLYRTAHDVLMKLETVKVRLSEAKDRPSGVLRVSTTVGLGNGWLTERLPEFGALYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+Q+ILDN+++D++M  ADCA+R+R+P Q   LIQRKL T+H H YA+P YL    +P S
Sbjct: 121 QLQVILDNEELDLTMRQADCALRMRQP-QQPDLIQRKLFTVHFHLYASPAYLNRYGKPNS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I ELD+H ++ FG+ +P  + D NWL T  RP G  R + LQ+N+ LSI      G+GIA
Sbjct: 180 IDELDRHRIVIFGETVPPHLSDMNWLETAGRPEGSKRAAALQINNILSIKIAVQRGAGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LPDY V  +  LV+++ +   PSF  YFCYP+ +KN  K++ FR+F+  K+R W
Sbjct: 240 ILPDYAVGSDSGLVQLLPETEVPSFDTYFCYPDTMKNQAKMQVFRDFLISKSRGW 294


>gi|254503432|ref|ZP_05115583.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222439503|gb|EEE46182.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 302

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 147/299 (49%), Positives = 205/299 (68%), Gaps = 3/299 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++ DWDKLR+F+  A++GSFTHA + LH+SQS++SRQ+S LE ++G+ LF+RHARGL LT
Sbjct: 3   IAMDWDKLRIFHAAAQAGSFTHAGDTLHMSQSAVSRQVSALEHDLGVPLFHRHARGLLLT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   +V  KLE  Q  L++S  KPSG L++ TT+ LG   L   ++ F  LYP
Sbjct: 63  EQGELLYRTAGDVLMKLEAVQSRLKDSKDKPSGVLKVTTTVGLGSTWLASRIRSFTDLYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++QLI DN ++D+SM  AD AIRLR+P Q   LIQRKL T+H H +A+P Y++    P
Sbjct: 123 DVELQLIFDNDELDLSMREADVAIRLRQPTQ-PDLIQRKLFTVHFHVFASPEYIQRFGSP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI+++D H +ITFG+  P  +   NWL T  R  G+PR S LQVN+ ++I +    G+G
Sbjct: 182 SSIEDIDDHRIITFGEQAPAYLRSMNWLVTAGRVDGKPRQSVLQVNNIIAIKRAVQTGAG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA+LPDYI+ +  NLV ++ED     PSF  YF YP  LKNT ++ AFR F+   A++W
Sbjct: 242 IAMLPDYIIDNGRNLVPVLEDQEDKVPSFDTYFVYPSELKNTARVTAFREFLLKNAQNW 300


>gi|90418040|ref|ZP_01225952.1| possible transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337712|gb|EAS51363.1| possible transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 298

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 145/299 (48%), Positives = 205/299 (68%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DWDKLR+F+  A +GSFTHAA+ L+LSQS+ISRQ++ LE EVG  LF+RHARGL L+
Sbjct: 1   MALDWDKLRIFHAAAEAGSFTHAADVLNLSQSAISRQVAALEQEVGTPLFHRHARGLVLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L    S+V  +LE  +++L E+  KP+GKLR+ TT+ LG   L    KEFL LYP
Sbjct: 61  EQGELLFHTASDVLKRLEQVRMQLTETREKPTGKLRVTTTVGLGSGWLTERAKEFLELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++QL+ DN++ID++M  AD AIRLR+P Q   LIQR+L T+H+H YA+P YL     P
Sbjct: 121 ELELQLVFDNEEIDLTMRKADAAIRLRQP-QQPDLIQRRLFTVHLHVYASPAYLNRFGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++LD H +ITFG+  P  + + N L TV  P G+ R   LQ+N+ ++I      G G
Sbjct: 180 ETVEDLDNHRIITFGEPAPNYLRNLNTLETVGLPDGKSRSPILQINNLMAIRSAIESGIG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +ALLPDY++     LV+++ ++  P+F  Y CYPE ++N  KLK FR+F+  KAR W F
Sbjct: 240 LALLPDYMIDKRVKLVQVLPEMEMPTFDTYLCYPEQMRNAAKLKVFRDFLISKARTWAF 298


>gi|118591794|ref|ZP_01549189.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Stappia aggregata IAM 12614]
 gi|118435437|gb|EAV42083.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Stappia aggregata IAM 12614]
          Length = 298

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 148/299 (49%), Positives = 196/299 (65%), Gaps = 3/299 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A++GSFTHA + LH+SQS++SRQ+S LE ++G+ LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAAAQAGSFTHAGDTLHMSQSAVSRQVSALEHDLGVPLFHRHARGLLLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R  ++V  KLE  Q  L +S  KPSG LR+ TT+ LG   L   ++ F+ LYPD+
Sbjct: 61  GELLYRTANDVLMKLEAVQSSLTDSKEKPSGALRVTTTVGLGSTWLTSRIRSFIDLYPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + LI D+ ++D+ M  AD AIRLR+P Q   LIQRKL T+H H YAAP YL+    P++
Sbjct: 121 DLHLIFDDDELDLGMREADVAIRLRQPTQ-PDLIQRKLFTVHFHVYAAPEYLQRFGTPVT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +LDKH LITFG+  P  +   NWL T  R    PR S L+ N+ ++I +    G GIA
Sbjct: 180 IDDLDKHRLITFGEQAPAYLRSMNWLETAGRVATSPRRSVLKANNIVAIKRAVQSGVGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDYI+  + NLV +M D     PSF  YF YP  LKNT ++ AFR F+   A  W F
Sbjct: 240 ILPDYIIDKSSNLVPVMTDQEDKVPSFDTYFVYPSELKNTARVTAFREFLLANAEGWVF 298


>gi|304391324|ref|ZP_07373268.1| transcriptional regulator, LysR family [Ahrensia sp. R2A130]
 gi|303296680|gb|EFL91036.1| transcriptional regulator, LysR family [Ahrensia sp. R2A130]
          Length = 298

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 148/299 (49%), Positives = 203/299 (67%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLR+F+ VA +GSFT A+E L+LSQS+ISRQIS LE EVG+ LF RHARGL LT
Sbjct: 1   MPMDWDKLRIFHKVANAGSFTRASEVLNLSQSAISRQISALEGEVGVPLFNRHARGLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L   T  +   LE   +EL +    P G LR+ TT+ LG   L   + EFL  YP
Sbjct: 61  EQGEILFGATEGITGTLEKVHVELTDFKGTPQGPLRVTTTVGLGSAWLAIRMHEFLDSYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q++L+L+N ++D+ M  ADCAIRL++P Q + +IQR+L T+H H YAAP+YL++   P
Sbjct: 121 DMQVELMLENNELDLGMRQADCAIRLQQP-QQADIIQRRLFTVHFHVYAAPNYLESHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++LD H L+ +GD  P  + D NWL +   P+G+ R   L++NS L+I +  V G+G
Sbjct: 180 EKIEDLDNHRLVAWGDGTPAYLGDLNWLLSAGMPLGKLRTPALKINSILAIQRAAVRGAG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +ALLPDY V  N  LV++MEDV  PSF  YF Y   L+ + +L+AFR+F+  KA++W+F
Sbjct: 240 VALLPDYAVGVNSPLVKVMEDVEIPSFDTYFAYSSELRRSARLEAFRDFLLEKAKEWRF 298


>gi|13472303|ref|NP_103870.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023049|dbj|BAB49656.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 298

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 203/299 (67%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DWDKLRVF+  A +GSFTHAAE LHLSQS+ISRQ+S LE +VG+ LF RHARGL LT
Sbjct: 1   MALDWDKLRVFHAAAEAGSFTHAAETLHLSQSAISRQVSALEHDVGVPLFNRHARGLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L R   +V  KLET +  L E+  +PSG LR+ TT+ LG   L   ++EF+ LYP
Sbjct: 61  EQGEMLFRTAHDVLMKLETIKSRLTETKDRPSGVLRVTTTVGLGAGWLTERVQEFIELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I +QLIL N+++D++M  ADCAIRLR+P Q   LIQR+L T+H H YAAP Y+    +P
Sbjct: 121 EISLQLILANEELDLTMRQADCAIRLRQP-QQPDLIQRRLFTVHFHLYAAPSYVAKHGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL  H ++TFG  +P  + + NWL TV    G  R+  LQ+N  LSI +    G+G
Sbjct: 180 ASVSELRNHRIVTFGLPVPSHLSELNWLETVGDFEGGQRVPSLQINDILSIKRAVQGGAG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDY++  +  LV+++ +   PSF  YF YP+A+KN  KL  FR+FI  KAR W F
Sbjct: 240 IAMLPDYVINKDSGLVQLLPETEVPSFDTYFAYPDAMKNQAKLHVFRDFIIAKARSWSF 298


>gi|319408891|emb|CBI82548.1| transcriptional regulator, LysR family [Bartonella schoenbuchensis
           R1]
          Length = 301

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 161/299 (53%), Positives = 211/299 (70%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLRVF+  A +GSFTHAAE+LHLSQS+ISRQ++ LE +VG+ LF RHARGL LTE
Sbjct: 4   PLDWDKLRVFHAAAEAGSFTHAAEKLHLSQSAISRQVAALEQDVGVPLFQRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE  + +L ESS KP+G+LR+ +T  +G   L     EFL LYPD
Sbjct: 64  QGEILYRTAYDVLMKLENARSQLNESSKKPTGRLRVTSTFGMGAGWLAKRAHEFLSLYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QIQL+LD+K+ID+++ YADCA+RLR+P Q   LIQRKL T+HMH YA+ +Y+    +P 
Sbjct: 124 MQIQLLLDDKEIDLTIRYADCAVRLRQP-QQPGLIQRKLFTVHMHVYASVNYIATYGKPE 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + ELD H +I+FG+ +P  +   NWL    R  G  R+S LQ+N+ +SI    +   GI
Sbjct: 183 KLSELDSHRIISFGEPVPSYLSGLNWLEKAGRSDGSLRVSALQINNIISIKNALMRDFGI 242

Query: 242 ALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A+LPDYIV +N  LVR+  D V  PSF  +FCYP+ALKN+ KL AFR++IFLKAR W F
Sbjct: 243 AVLPDYIVNNNEQLVRLFPDMVDIPSFDTFFCYPDALKNSAKLNAFRDYIFLKARKWSF 301


>gi|328542874|ref|YP_004302983.1| LysR family transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326412620|gb|ADZ69683.1| LysR family transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 298

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 142/299 (47%), Positives = 204/299 (68%), Gaps = 3/299 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A++GSFTHA + L++SQS++SRQ+S LE ++G+ LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAAAQAGSFTHAGDSLNMSQSAVSRQVSALEQDLGVPLFHRHARGLLLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   EV  KLE  +  L ++  KPSG LR+ TT+ LG   L   + EF+ LYP++
Sbjct: 61  GELLYRTAREVLMKLEAVRTRLTDTREKPSGVLRVTTTVGLGSTWLTSRINEFIDLYPEM 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++LI D+ ++D+SM  AD AIRLR+P Q   LIQRKL T+H H YA+P YL+    P S
Sbjct: 121 ELRLIFDDDELDLSMREADAAIRLRQPTQ-PDLIQRKLFTVHFHLYASPQYLQRYGTPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I++LD+H ++TFG+  P  + D NWL T  R   +PR   L+VN+ ++I +    G GIA
Sbjct: 180 IEDLDEHRIVTFGEHAPVYLRDMNWLETAGRSPADPRRCVLRVNNVVAIKRAVQRGVGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDYI++++  LV ++ ++    PSF  YF YP  LKNT ++ AFR+F+  KA  W +
Sbjct: 240 ILPDYIIENDSALVPLLAELEDKIPSFDTYFVYPSELKNTARITAFRDFLLAKAERWSY 298


>gi|319781967|ref|YP_004141443.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167855|gb|ADV11393.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 298

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 203/299 (67%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DWDKLRVF+  A +GSFTHAAE LHLSQS+ISRQ+S LE +VG+ LF RHARGL LT
Sbjct: 1   MALDWDKLRVFHAAAEAGSFTHAAETLHLSQSAISRQVSALEHDVGVPLFNRHARGLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L R   +V  KLET +  L E+  +PSG LR+ TT+ LG   L   ++EF+ LYP
Sbjct: 61  EQGEMLFRTAHDVLMKLETIKSRLTETKDRPSGVLRVTTTVGLGAGWLTERVQEFIELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I +QLIL N+++D++M  ADCAIRLR+P Q   LIQR+L T+H H YAAP Y+     P
Sbjct: 121 EISLQLILANEELDLTMRQADCAIRLRQP-QQPDLIQRRLFTVHFHLYAAPSYVAKHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL  H ++TFG  +P  + + NWL TV    G  R+  LQ+N  LSI +    G+G
Sbjct: 180 SSVAELKAHRIVTFGVPVPSHLSELNWLETVGDFEGGQRVPTLQINDILSIKRAVQGGAG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDY++  + +LV+++ +   PSF  YF YP+A+KN  KL  FR+FI  KAR W F
Sbjct: 240 IAMLPDYVISKDSDLVQLLPETEVPSFDTYFAYPDAMKNQAKLHVFRDFIIAKARSWSF 298


>gi|312114882|ref|YP_004012478.1| LysR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220011|gb|ADP71379.1| transcriptional regulator, LysR family [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 296

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 137/297 (46%), Positives = 203/297 (68%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A++GSFTHA E L +SQS++SR I+ LE ++ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAAAQAGSFTHAGETLAISQSAVSRHIASLERDLNVPLFHRHARGLVLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   EV+ KL TTQI L +S  KP+G+L++ TT+ LG   L   L EF+ LYPDI
Sbjct: 61  GELLYRTAQEVFSKLATTQILLADSRGKPNGQLKVTTTMALGTGWLTPRLNEFMKLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+QLILD++ ++++M  AD AI    P Q   L++RKL T+H H YA+  Y+K    P +
Sbjct: 121 QLQLILDDETLNLTMREADVAIWFGPPSQQD-LVRRKLFTVHFHVYASVEYVKRNGRPRN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++LD+H ++T+G ++P   ++ NWL T  R   + R   +++NS L++ +  + G GIA
Sbjct: 180 LEDLDRHRILTYGGVLPSPFKEMNWLETAGRDGRDLRDPSVRINSLLALREAVLQGVGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY+ KD+P LV ++E+   P F  YF YP  LK+T ++ AFR+F+  K+R+W F
Sbjct: 240 VLPDYLAKDHPRLVNVLEEAEMPVFDTYFVYPADLKDTKRVNAFRDFLVEKSREWSF 296


>gi|260464011|ref|ZP_05812206.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259030182|gb|EEW31463.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 298

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 203/299 (67%), Gaps = 1/299 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DWDKLRVF+  A +GSFTHAAE LHLSQS+ISRQ+S LE +VG+ LF RHARGL LT
Sbjct: 1   MALDWDKLRVFHAAAEAGSFTHAAETLHLSQSAISRQVSALEHDVGVPLFNRHARGLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L R   +V  KLET +  L E+  +PSG LR+ TT+ LG   L   ++EF+ LYP
Sbjct: 61  EQGEMLFRTAHDVLMKLETIKSRLTETKDRPSGVLRVTTTVGLGAGWLTERVQEFIELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I +QLIL N+++D++M  ADCAIRLR+P Q   LIQR+L T+H H YAAP Y+    +P
Sbjct: 121 EISLQLILANEELDLTMRQADCAIRLRQP-QQPDLIQRRLFTVHFHLYAAPSYVAKHGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL  H ++TFG  +P  + + NWL TV    G  R+  LQ+N  LSI +    G+G
Sbjct: 180 ASVAELRTHRIVTFGLPVPSHLSELNWLETVGDFEGGQRVPSLQINDILSIKRAVQGGAG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDY++  +  LV+++ +   PSF  YF YP+A+KN  KL  FR+FI  KAR W F
Sbjct: 240 IAMLPDYVISKDSGLVQLLPETEVPSFDTYFAYPDAMKNQAKLHVFRDFIIAKARSWSF 298


>gi|298292339|ref|YP_003694278.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928850|gb|ADH89659.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 307

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 139/299 (46%), Positives = 200/299 (66%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKL+VF+V A +GSFTHA E L LSQS++SRQ+S LE E+ I LF+RHARGL LTE
Sbjct: 10  DMDWDKLKVFHVAAEAGSFTHAGEALGLSQSAVSRQVSALEQELNIPLFHRHARGLILTE 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   EV+ KLE  + +L +S  KP+G+LR+ TT+ LG + L   + EFL LYPD
Sbjct: 70  QGDLLYRTAHEVFMKLEAARAKLTDSREKPNGELRVTTTMGLGTHWLTARIGEFLELYPD 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I LIL + ++D++M  AD AIRLR+P+Q   LIQRKL T+H HA+A+  YLK    P 
Sbjct: 130 IRITLILTDDELDLAMREADVAIRLRQPVQ-PDLIQRKLFTVHFHAFASAEYLKRNGHPR 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSG 240
           +++ELD+H +I  G  IP   +D NWL       G+  R+  L VN+ L + +    G G
Sbjct: 189 TLEELDQHRIILLGGPIPSYFQDLNWLERAGVEDGQDGRVPSLSVNNVLGLKRAVERGVG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           I ++PDY+++D+  LV++  +  TP+   YF YP+ +++  +++ FR+F+  KA+ W F
Sbjct: 249 IGIVPDYLLEDSATLVQLFPERTTPTLEAYFVYPQEMRSVARIQVFRDFLVAKAQRWSF 307


>gi|49474486|ref|YP_032528.1| LysR family transcriptional regulator [Bartonella quintana str.
           Toulouse]
 gi|49239990|emb|CAF26404.1| Transcription regulator (lysr family) [Bartonella quintana str.
           Toulouse]
          Length = 301

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 160/300 (53%), Positives = 213/300 (71%), Gaps = 2/300 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S DWDKLRVF+  A +GSFTHAA++LHLSQS+ISRQ+S LE EVG+ LF RHARGL LT
Sbjct: 3   LSLDWDKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSALEQEVGVFLFQRHARGLILT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R T +V  KLE+   +L ES  KP+G LR+ +T  +G   L  ++ EFL LYP
Sbjct: 63  EQGEILYRTTHDVLMKLESAHSQLSESCEKPAGNLRVTSTCGMGAGWLVEHMPEFLSLYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+IQL+ D+K++D++M +ADCA+RL+KP Q   LIQRKL TIHMH YA+ +Y+ N  +P
Sbjct: 123 DIRIQLLFDDKELDLTMRHADCAVRLQKP-QQPDLIQRKLFTIHMHVYASKNYIANYGKP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + ELD+H +I+FG+ +P  +   NWL    +  G  R S L++N+ +SI    +   G
Sbjct: 182 EKLSELDEHRIISFGESVPPYLSGLNWLEKAGKGDGSLRPSVLRINNVISIKNALMCDLG 241

Query: 241 IALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV ++ +LVR+  D V  PSF  +FCYP ALKN  KLKAFR++IF KAR W F
Sbjct: 242 IAVLPDYIVDNDEHLVRLFPDMVDIPSFDTFFCYPYALKNLAKLKAFRDYIFSKARQWSF 301


>gi|239832379|ref|ZP_04680708.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239824646|gb|EEQ96214.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 301

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 156/299 (52%), Positives = 210/299 (70%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTE
Sbjct: 4   PLDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE  + +L ES  KP+G+LR+ TT+ LG   L   ++EF+ LYPD
Sbjct: 64  QGETLYRTAHDVLMKLENVRSKLAESKEKPTGRLRVTTTVGLGSGWLIERIQEFVELYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+QLILDN+++D++M +ADCAIRLR+P Q   LIQR+L T+HMH YA+  Y+    +  
Sbjct: 124 IQLQLILDNEELDLTMRHADCAIRLRQP-QQPDLIQRRLFTVHMHVYASAGYVSKYGKLN 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI E+D+H ++TFG+  P  +   NWL    R  G  RI  LQVN+ LSI +    G GI
Sbjct: 183 SIDEIDQHRVVTFGEPAPSYLTGLNWLEIAGRTDGSSRIPALQVNNLLSIRRAVQRGVGI 242

Query: 242 ALLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A+LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 243 AVLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|153008995|ref|YP_001370210.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560883|gb|ABS14381.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 301

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 156/299 (52%), Positives = 210/299 (70%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTE
Sbjct: 4   PLDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE  + +L ES  KP+G+LR+ TT+ LG   L   ++EF+ LYPD
Sbjct: 64  QGETLYRTAHDVLMKLENVRSKLAESKEKPTGRLRVTTTVGLGSGWLIERIQEFVELYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+QLILDN+++D++M +ADCAIRLR+P Q   LIQR+L T+HMH YA+  Y+    +  
Sbjct: 124 IQLQLILDNEELDLTMRHADCAIRLRQP-QQPDLIQRRLFTVHMHVYASAGYVSKYGKLN 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI E+D+H ++TFG+  P  +   NWL    R  G  RI  LQVN+ LSI +    G GI
Sbjct: 183 SIDEIDQHRVVTFGEPAPSYLTGLNWLEIAGRADGSTRIPALQVNNLLSIRRAVQRGVGI 242

Query: 242 ALLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A+LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 243 AVLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|294852816|ref|ZP_06793489.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|294821405|gb|EFG38404.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
          Length = 306

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 211/299 (70%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTE
Sbjct: 9   PLDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTE 68

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD
Sbjct: 69  QGETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPD 128

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  
Sbjct: 129 VQLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLN 187

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GI
Sbjct: 188 SIDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGI 247

Query: 242 ALLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A+LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 248 AVLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 306


>gi|163843752|ref|YP_001628156.1| hypothetical protein BSUIS_A1554 [Brucella suis ATCC 23445]
 gi|163674475|gb|ABY38586.1| Hypothetical protein BSUIS_A1554 [Brucella suis ATCC 23445]
          Length = 301

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 156/299 (52%), Positives = 212/299 (70%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTE
Sbjct: 4   PLDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD
Sbjct: 64  QGETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  
Sbjct: 124 VQLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLN 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI E+D+H ++TFG+L P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GI
Sbjct: 183 SIDEIDQHRIVTFGELAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGI 242

Query: 242 ALLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A+LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 243 AVLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|297248772|ref|ZP_06932490.1| LysR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
 gi|297175941|gb|EFH35288.1| LysR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
          Length = 301

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 211/299 (70%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTE
Sbjct: 4   PLDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD
Sbjct: 64  QGETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  
Sbjct: 124 VQLQLILDNEELDLAMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLN 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GI
Sbjct: 183 SIDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGI 242

Query: 242 ALLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A+LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 243 AVLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|17986796|ref|NP_539430.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. 16M]
 gi|23502367|ref|NP_698494.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|62290387|ref|YP_222180.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82700309|ref|YP_414883.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus
           2308]
 gi|148559572|ref|YP_001259377.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|161619445|ref|YP_001593332.1| hypothetical protein BCAN_A1535 [Brucella canis ATCC 23365]
 gi|189024613|ref|YP_001935381.1| LysR family transcriptional regulator [Brucella abortus S19]
 gi|225852977|ref|YP_002733210.1| hypothetical protein BMEA_A1549 [Brucella melitensis ATCC 23457]
 gi|237815892|ref|ZP_04594889.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|254689685|ref|ZP_05152939.1| hypothetical protein Babob68_05829 [Brucella abortus bv. 6 str.
           870]
 gi|254694175|ref|ZP_05156003.1| hypothetical protein Babob3T_05834 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697828|ref|ZP_05159656.1| hypothetical protein Babob28_08995 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254704751|ref|ZP_05166579.1| hypothetical protein Bsuib36_12694 [Brucella suis bv. 3 str. 686]
 gi|254708163|ref|ZP_05169991.1| hypothetical protein BpinM_14724 [Brucella pinnipedialis
           M163/99/10]
 gi|254710536|ref|ZP_05172347.1| hypothetical protein BpinB_09771 [Brucella pinnipedialis B2/94]
 gi|254719535|ref|ZP_05181346.1| hypothetical protein Bru83_08328 [Brucella sp. 83/13]
 gi|254730717|ref|ZP_05189295.1| hypothetical protein Babob42_05849 [Brucella abortus bv. 4 str.
           292]
 gi|256032029|ref|ZP_05445643.1| hypothetical protein BpinM2_15538 [Brucella pinnipedialis
           M292/94/1]
 gi|256045119|ref|ZP_05448020.1| hypothetical protein Bmelb1R_11564 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061551|ref|ZP_05451693.1| hypothetical protein Bneo5_14465 [Brucella neotomae 5K33]
 gi|256114056|ref|ZP_05454826.1| hypothetical protein Bmelb3E_14762 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256257936|ref|ZP_05463472.1| hypothetical protein Babob9C_11436 [Brucella abortus bv. 9 str.
           C68]
 gi|256263543|ref|ZP_05466075.1| bacterial regulatory protein LysR [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369914|ref|YP_003107425.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260546925|ref|ZP_05822664.1| bacterial regulatory protein LysR [Brucella abortus NCTC 8038]
 gi|260565280|ref|ZP_05835764.1| bacterial regulatory protein LysR [Brucella melitensis bv. 1 str.
           16M]
 gi|260566004|ref|ZP_05836474.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40]
 gi|260755218|ref|ZP_05867566.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260758438|ref|ZP_05870786.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260762264|ref|ZP_05874607.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884232|ref|ZP_05895846.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|261214481|ref|ZP_05928762.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261315671|ref|ZP_05954868.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261318109|ref|ZP_05957306.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261325559|ref|ZP_05964756.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261755448|ref|ZP_05999157.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|265984543|ref|ZP_06097278.1| transcriptional regulator [Brucella sp. 83/13]
 gi|265989139|ref|ZP_06101696.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265991553|ref|ZP_06104110.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995391|ref|ZP_06107948.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|306838474|ref|ZP_07471315.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|306843154|ref|ZP_07475774.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306844500|ref|ZP_07477089.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|17982427|gb|AAL51694.1| transcriptional regulatory protein, lysr family [Brucella
           melitensis bv. 1 str. 16M]
 gi|23348350|gb|AAN30409.1| transcriptional regulator, LysR family [Brucella suis 1330]
 gi|62196519|gb|AAX74819.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82616410|emb|CAJ11473.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Brucella melitensis biovar Abortus 2308]
 gi|148370829|gb|ABQ60808.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840]
 gi|161336256|gb|ABX62561.1| Hypothetical protein BCAN_A1535 [Brucella canis ATCC 23365]
 gi|189020185|gb|ACD72907.1| Bacterial regulatory protein LysR [Brucella abortus S19]
 gi|225641342|gb|ACO01256.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|237789190|gb|EEP63401.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|256000077|gb|ACU48476.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260095975|gb|EEW79852.1| bacterial regulatory protein LysR [Brucella abortus NCTC 8038]
 gi|260151348|gb|EEW86442.1| bacterial regulatory protein LysR [Brucella melitensis bv. 1 str.
           16M]
 gi|260155522|gb|EEW90602.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40]
 gi|260668756|gb|EEX55696.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260672696|gb|EEX59517.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675326|gb|EEX62147.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260873760|gb|EEX80829.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|260916088|gb|EEX82949.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261297332|gb|EEY00829.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261301539|gb|EEY05036.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261304697|gb|EEY08194.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261745201|gb|EEY33127.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|262766504|gb|EEZ12293.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|263002337|gb|EEZ14912.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093572|gb|EEZ17597.1| bacterial regulatory protein LysR [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661336|gb|EEZ31597.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|264663135|gb|EEZ33396.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306275111|gb|EFM56867.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306286677|gb|EFM58235.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306406438|gb|EFM62676.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|326409516|gb|ADZ66581.1| Bacterial regulatory protein LysR [Brucella melitensis M28]
 gi|326539224|gb|ADZ87439.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 301

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 211/299 (70%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTE
Sbjct: 4   PLDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD
Sbjct: 64  QGETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  
Sbjct: 124 VQLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLN 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GI
Sbjct: 183 SIDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGI 242

Query: 242 ALLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A+LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 243 AVLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|319898516|ref|YP_004158609.1| transcriptional regulator, LysR family [Bartonella clarridgeiae 73]
 gi|319402480|emb|CBI76023.1| transcriptional regulator, LysR family [Bartonella clarridgeiae 73]
          Length = 301

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 153/300 (51%), Positives = 208/300 (69%), Gaps = 2/300 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  DWDKLRVF+  A +GSFTHAA++LHLSQS+ISRQ+S LE +VG+ LF RHARGL LT
Sbjct: 3   LPLDWDKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSALEQDVGVPLFQRHARGLILT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+    ++  KLE  +++L ES  KP G LR+ +T  +G   L   + EFL LYP
Sbjct: 63  EQGEILYCTAHDILMKLENARLQLSESCQKPKGCLRVTSTFGMGAGWLAERMPEFLSLYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQL+ D++++D++M YADCAIRLR+P Q   LIQRKL T+HMH YA+ +Y+ N  +P
Sbjct: 123 DMQIQLLFDDEELDLTMRYADCAIRLRQP-QQPDLIQRKLFTVHMHVYASENYIANYGKP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + ELD+H +I+FG+ +P  +   NWL    R     R+S LQ+N+ +SI    +   G
Sbjct: 182 EKLSELDEHRIISFGEPVPPYLVGLNWLQKAGRSDDSVRVSMLQINNIISIKNALMRDLG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV ++  L+R+  D+   PSF  +FCY  ALKN+ KL AFR++IFLKAR W F
Sbjct: 242 IAVLPDYIVNNDEKLIRLFPDMSDIPSFDTFFCYSIALKNSAKLNAFRDYIFLKARKWSF 301


>gi|115525960|ref|YP_782871.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115519907|gb|ABJ07891.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisA53]
          Length = 307

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 139/297 (46%), Positives = 194/297 (65%), Gaps = 2/297 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTE
Sbjct: 10  DMDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTE 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L R   +V+ +L+  + +L +S  +PSG L+I TT  LG + L   L EF  LYP+
Sbjct: 70  QGDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGLGIHWLVPRLGEFTALYPE 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY +P Y+K+   P 
Sbjct: 130 IRISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKHFGTPR 188

Query: 182 SIQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++ELD H LI  GD  IP  +++ NWL    R    PR    +VN+ L +++ C  G G
Sbjct: 189 TLEELDNHRLIVLGDTQIPPHLQNRNWLIDAGRNGAGPREPYFKVNNILGVIRACQQGLG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LPDY+V++N  LV++  +  +     YF YPE LK+  +++ FR+FI  KA+ W
Sbjct: 249 IAALPDYLVEENNKLVQLFGEADSIQLDTYFVYPEELKSVARVQVFRDFIVSKAQRW 305


>gi|49475889|ref|YP_033930.1| LysR family transcriptional regulator [Bartonella henselae str.
           Houston-1]
 gi|49238697|emb|CAF27948.1| Transcription regulator (lysr family) [Bartonella henselae str.
           Houston-1]
          Length = 301

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 157/299 (52%), Positives = 209/299 (69%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLRVF+  A +GSFTHAA+ LHLSQS+ISRQ+S LE EVG+ LF RHARGL LTE
Sbjct: 4   PLDWDKLRVFHAAAEAGSFTHAAQMLHLSQSAISRQVSALEQEVGVSLFQRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R T +V  KLE+ + +L ES  KP+G LR+ +T  +G   L   + EFL LYPD
Sbjct: 64  QGEILYRTTHDVLMKLESARSQLSESCEKPAGNLRVTSTFGMGAGWLVERMPEFLSLYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++IQL+ D+K++D+ M YADCA+RL++P Q   LIQ+KL TIHMH YA+ +Y+ N  +P 
Sbjct: 124 MRIQLLFDDKELDLMMRYADCAVRLQQP-QQPDLIQKKLFTIHMHVYASKNYIANYGKPE 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + ELD H +I+FG+ +P  +   NWL    +  G  R+S L++N+ +SI    +   GI
Sbjct: 183 KLSELDNHRIISFGEPVPTYLSGLNWLEKAGKSDGALRLSILRINNIISIKNALMRDLGI 242

Query: 242 ALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A+LPDYIV ++ +LVR+  D V  PSF  +FCYP ALKN  KLKAFR++IF KAR W F
Sbjct: 243 AVLPDYIVDNDEHLVRLFPDMVDIPSFDTFFCYPYALKNLAKLKAFRDYIFSKARQWSF 301


>gi|254714718|ref|ZP_05176529.1| hypothetical protein BcetM6_15549 [Brucella ceti M644/93/1]
 gi|254717779|ref|ZP_05179590.1| hypothetical protein BcetM_15531 [Brucella ceti M13/05/1]
 gi|261219627|ref|ZP_05933908.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261322515|ref|ZP_05961712.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|260924716|gb|EEX91284.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261295205|gb|EEX98701.1| transcriptional regulator [Brucella ceti M644/93/1]
          Length = 301

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 154/299 (51%), Positives = 210/299 (70%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+  LE +VG+ LF+RHARGL LTE
Sbjct: 4   PLDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVGALEQDVGVPLFHRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD
Sbjct: 64  QGETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  
Sbjct: 124 VQLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLN 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GI
Sbjct: 183 SIDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGI 242

Query: 242 ALLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A+LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 243 AVLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|225627941|ref|ZP_03785977.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|260169165|ref|ZP_05755976.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99]
 gi|261758678|ref|ZP_06002387.1| bacterial regulatory protein LysR [Brucella sp. F5/99]
 gi|225617104|gb|EEH14150.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|261738662|gb|EEY26658.1| bacterial regulatory protein LysR [Brucella sp. F5/99]
          Length = 301

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 155/299 (51%), Positives = 211/299 (70%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTE
Sbjct: 4   PLDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSVLEQDVGVPLFHRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD
Sbjct: 64  QGETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  
Sbjct: 124 VQLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLN 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GI
Sbjct: 183 SIDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGI 242

Query: 242 ALLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A+LPDY+      LV+++ ++   PSF  +FCYPEALKN+ KL AFR+F+F KAR+W +
Sbjct: 243 AVLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARNWTY 301


>gi|90425322|ref|YP_533692.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90107336|gb|ABD89373.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 307

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 137/297 (46%), Positives = 194/297 (65%), Gaps = 2/297 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTE
Sbjct: 10  DMDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTE 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L R   +V+ +L+  + +L +S  +PSG L++ TT  LG + L   L EF  LYP+
Sbjct: 70  QGDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKVTTTPGLGIHWLVPRLGEFTALYPE 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY AP Y+K+   P 
Sbjct: 130 IRISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCAPEYIKHFGTPR 188

Query: 182 SIQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++ELD H LI  GD  +P  +++ NWL    R    PR    +VN+ L +++ C  G G
Sbjct: 189 TLEELDNHRLIILGDTQVPPYLQNRNWLIDAGRNGAGPREPYFKVNNILGVIRACQQGLG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LPDY+V++N  LV++  +  +     YF YPE LK+  +++ FR+F+  KA+ W
Sbjct: 249 IAALPDYLVEENNRLVQLFGEQDSIQLDTYFVYPEELKSVARVQVFRDFVVSKAQRW 305


>gi|158422773|ref|YP_001524065.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158329662|dbj|BAF87147.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 296

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 137/297 (46%), Positives = 199/297 (67%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+V A +GSFTHA E L LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLKVFHVAAEAGSFTHAGETLGLSQSAVSRQVSALEQELKVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   EV+ KLE+ + +L +S  KP+G+LR+ TT+ LG + L   + EF+ LYPDI
Sbjct: 61  GELLYRTAHEVFLKLESARAQLTDSREKPNGELRVTTTVGLGTHWLTARVGEFVELYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQLIL ++++D++M  AD AIR+R+P+Q   L+QRKL T+H HAYA+  YLK   +P +
Sbjct: 121 RIQLILTDEELDLAMREADVAIRMRQPVQ-PDLVQRKLFTVHFHAYASVDYLKRHGQPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ELDKH ++  G  IP   +  NWL    R    PR+   +VNS L + +    G GI 
Sbjct: 180 LEELDKHRILLLGGPIPSYFQGLNWLEHAGRDGSTPRVPAFEVNSVLGLKRAVERGVGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LPDY+  D+ +LV++  D  TP    YF Y + +++  +++ FR+F+  KA+ W +
Sbjct: 240 TLPDYLSDDSSSLVQLFTDRETPQLEAYFTYAQEMRSVARIQVFRDFLISKAQRWSY 296


>gi|121602215|ref|YP_989259.1| LysR family transcriptional regulator [Bartonella bacilliformis
           KC583]
 gi|120614392|gb|ABM44993.1| transcriptional regulator, LysR family [Bartonella bacilliformis
           KC583]
          Length = 301

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 148/299 (49%), Positives = 201/299 (67%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLRVF+  A +GSFTHAA++LHLSQS+ISRQ++ LE +VG  LF RHARGL LTE
Sbjct: 4   PLDWDKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVAALEQDVGAPLFQRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE  + +L ES  KP+G+LR+ +T  +G   +   + EFL LYPD
Sbjct: 64  QGEILYRTAHDVLIKLENARSQLTESREKPAGRLRVTSTFGMGAKWIAECMPEFLNLYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++IQ++LD+K +D++M  ADCAIRL +P Q   LIQRKL T+HMH YA+  Y+    +P 
Sbjct: 124 MRIQILLDDKALDLTMRDADCAIRLHQP-QQPDLIQRKLFTVHMHVYASEDYIARYGKPE 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +LD H +I+FG+ +P  +   NWL    R     R   LQ+N+ LSI    +   GI
Sbjct: 183 ELSDLDGHRIISFGETVPPYLSGLNWLERAGRSNCSLRTPVLQINNILSIKNALMGNLGI 242

Query: 242 ALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A+LPDYIV ++   VR+  D+   PSF  +FCYP+AL+N+ KL  FR++IFLKAR W F
Sbjct: 243 AVLPDYIVNNDEKFVRLFPDMTDIPSFDTFFCYPDALRNSAKLNVFRDYIFLKARKWSF 301


>gi|254470526|ref|ZP_05083930.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211960837|gb|EEA96033.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 303

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 143/298 (47%), Positives = 192/298 (64%), Gaps = 3/298 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DWDKLR+F+  A++GSFTHA E L++SQS++SRQ+S LE E+G+ LF+RHARGL  TE
Sbjct: 5   SLDWDKLRIFHAAAQAGSFTHAGEALNMSQSAVSRQVSALEAELGVPLFHRHARGLIPTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   EV  KLET Q  L ++  KPSG LR+ TT+ LG   L   + EF+ LYPD
Sbjct: 65  QGELLYRTAREVLLKLETVQSRLTDTKEKPSGTLRVTTTVGLGSTWLTARVNEFVDLYPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++I  + ++D+ M  AD AIRLR+P Q   LIQRKL T+H H YA+P Y++    P 
Sbjct: 125 MRLEIICMDDELDLGMREADVAIRLRQPTQ-PDLIQRKLFTVHFHVYASPKYIERYGSPS 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +LD H LIT GD +   +   NWLAT   P GE R   L+VN+   I +    G GI
Sbjct: 184 TIDDLDHHRLITIGDNMASYLRAMNWLATAGLPNGERRDVSLRVNNLSGIKKAVQTGVGI 243

Query: 242 ALLPDYIVKDNPNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A+LPDY+V+    + R+M       PSF  YF YP  LKNT ++ AFR+F+   A  W
Sbjct: 244 AILPDYMVEPGAGIKRVMSVTQEELPSFDTYFVYPSELKNTARVTAFRDFLVSYAERW 301


>gi|192292971|ref|YP_001993576.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192286720|gb|ACF03101.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 307

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 133/297 (44%), Positives = 191/297 (64%), Gaps = 2/297 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTE
Sbjct: 10  DMDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTE 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L R   +V+ +L+  + +L +S  +PSG L++ TT  LG + L   L EF  LYP+
Sbjct: 70  QGDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKVTTTPGLGIHWLVPRLGEFTALYPE 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY +P Y+KN   P 
Sbjct: 130 IRISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKNFGTPR 188

Query: 182 SIQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++++LD H LI   D  +P  +++ +WL    R    PR    +VN+ L +++ C  G G
Sbjct: 189 TLEDLDNHRLIMLSDSQVPPHLQNRSWLIEAGRNGMGPREPYFKVNNILGLVRACQQGLG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LPDY+++D   LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 249 IAALPDYLIEDTNRLVQLFGEEDSIQLDTYFVYPEELKTVARVQVFRDFVVNKAQRW 305


>gi|316935641|ref|YP_004110623.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315603355|gb|ADU45890.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           DX-1]
          Length = 307

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 134/297 (45%), Positives = 191/297 (64%), Gaps = 2/297 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTE
Sbjct: 10  DMDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTE 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L R   +V+ +L+  + +L +S  +PSG L++ TT  LG + L   L EF  LYP+
Sbjct: 70  QGDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKVTTTPGLGIHWLVPRLGEFTALYPE 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY +P Y+KN   P 
Sbjct: 130 IRISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKNFGTPR 188

Query: 182 SIQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++ELD H LI   D  +P  +++ +WL    R    PR    +VN+ L +++ C  G G
Sbjct: 189 TLEELDDHRLIMLSDSQVPPHLQNRSWLIEAGRNGVGPREPYFKVNNILGLVRACQQGLG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LPDY+++D   LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 249 IAALPDYLIEDTNRLVQLFGEEDSIQLDTYFVYPEELKTVARVQVFRDFVVNKAQRW 305


>gi|39937136|ref|NP_949412.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39650994|emb|CAE29517.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           CGA009]
          Length = 307

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 133/297 (44%), Positives = 191/297 (64%), Gaps = 2/297 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTE
Sbjct: 10  DMDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTE 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L R   +V+ +L+  + +L +S  +PSG L++ TT  LG + L   L EF  LYP+
Sbjct: 70  QGDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKVTTTPGLGIHWLVPRLGEFTALYPE 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY +P Y+KN   P 
Sbjct: 130 IRISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKNFGTPR 188

Query: 182 SIQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++++LD H LI   D  +P  +++ +WL    R    PR    +VN+ L +++ C  G G
Sbjct: 189 TLEDLDNHRLIMLSDSQVPPHLQNRSWLIEAGRSGMGPREPYFKVNNILGLVRACQQGLG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LPDY+++D   LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 249 IAALPDYLIEDTNRLVQLFGEEDSIQLDTYFVYPEELKTVARVQVFRDFVVNKAQRW 305


>gi|27382492|ref|NP_774021.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355664|dbj|BAC52646.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 297

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 132/296 (44%), Positives = 189/296 (63%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG L+I TT  +G N L   L EF  LYP+I
Sbjct: 61  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGVGINWLIPRLGEFTALYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL  +  HAY +P Y+K    P +
Sbjct: 121 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFAMGFHAYCSPDYIKRFGTPRT 179

Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ELD H +IT  D      +++ NWL    R    PR +  +VN+ L +++ C  G GI
Sbjct: 180 LEELDSHRIITLSDGTFAPHLQNRNWLVEAGRNGSGPREAYFRVNNILGLVRACQQGLGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY++++   LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 240 AALPDYLIEEQSRLVQLFGESDSIQLDTYFVYPEELKTVARVQVFRDFVVSKAQRW 295


>gi|91975931|ref|YP_568590.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB5]
 gi|91682387|gb|ABE38689.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB5]
          Length = 297

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 135/296 (45%), Positives = 193/296 (65%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG L+I TT  LG + L   L EF  LYP+I
Sbjct: 61  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGLGIHWLVPRLGEFTALYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY +P Y+K+   P +
Sbjct: 121 RISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKHFGTPRT 179

Query: 183 IQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ELD H LI   D  +P+ +++ +WL    R    PR    +VN+ L +++ C  G GI
Sbjct: 180 LEELDNHRLIMLSDSQVPQHLQNRSWLVDAGRNGSGPREPYFKVNNILGLVRACQQGLGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+V+D   LV++  +  +     YF YPE LK+  +++ FR+F+  KA+ W
Sbjct: 240 AALPDYLVEDPNRLVQLFGEEDSIQLDTYFVYPEELKSVARVQVFRDFVVNKAQRW 295


>gi|170725485|ref|YP_001759511.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810832|gb|ACA85416.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 303

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 84/297 (28%), Positives = 146/297 (49%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + VF  V  SGSF+ AA +L +S+S++S+++  LE ++G++L +R  R L+LTE
Sbjct: 1   MDTFSAIPVFVAVIESGSFSQAASRLGISKSAVSKRVRQLEDKLGVQLLHRTTRQLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      + Y         + +    P G+L++ + +  G+  +   + +FL  YPD
Sbjct: 61  AGERYFEYALKSYIAAAEGVDSVTQLQGNPKGELKVNSPMSFGRLHIAPLVADFLAKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + +++D++ +D+     D AIR    +Q S+LI R+L        AAP YLK    PL
Sbjct: 121 ITLNMVMDDRVVDLVEGGFDLAIRAGS-LQDSTLIARRLAPCRSVICAAPEYLKKYGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L +HN I +            W   +D  P+        +VN+  ++ +  + G G
Sbjct: 180 IPTDLSRHNCINYAYFSGGS----EWTFHMDTGPLKVKVSGNYRVNNSEALQKAILSGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA +P +IV  +     LV ++ D   P  T Y  +PE      K++ F +FI  + 
Sbjct: 236 IAKIPTFIVGQDIAEGKLVPLLTDYQLPMQTFYAVFPERQHLPAKVRVFLDFILERL 292


>gi|262276972|ref|ZP_06054765.1| transcriptional regulator [alpha proteobacterium HIMB114]
 gi|262224075|gb|EEY74534.1| transcriptional regulator [alpha proteobacterium HIMB114]
          Length = 294

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 126/297 (42%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL++F+ V ++GSFT A E L+LSQS+ISRQI  LE E+   LF RHARGL+LTE 
Sbjct: 1   MDWDKLKIFHAVTQAGSFTKAGEVLNLSQSAISRQIQSLEYELKCSLFQRHARGLSLTEN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++  +EV  K++  + +L E   KPSGKL + T +  G   L   +KEF    PDI
Sbjct: 61  GETLYKTANEVISKIKEVETDLVERKDKPSGKLVVTTVVGFGGIWLTPRIKEFRDKNPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L++ N ++D+S+  AD AI +R P Q  + IQRKLV I+ H Y +  Y+     P +
Sbjct: 121 EVELVVTNDELDLSLREADIAIWMRPPKQ-LNYIQRKLVDINYHIYGSSKYIAKKGTPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++LDKH+LIT+G   P  + +  W+  +     + R   ++VN+  S+M     G+G+A
Sbjct: 180 AKDLDKHDLITYGKGTPSPLSEKEWILKLG--SKQKRKPVMKVNNIYSLMLAVDAGAGLA 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LPDY+V DN  LVR++ +   P +  +F YP++LKN  ++KAFR+FIF K  +W F
Sbjct: 238 ALPDYMVGDNKGLVRVLPETKGPKYEAHFVYPQSLKNVARVKAFRDFIFNKVAEWNF 294


>gi|86748636|ref|YP_485132.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86571664|gb|ABD06221.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 307

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 135/297 (45%), Positives = 191/297 (64%), Gaps = 2/297 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTE
Sbjct: 10  DMDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTE 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L R   +V+ +L+  + +L +S  +PSG L+I TT  LG + L   L EF  LYP+
Sbjct: 70  QGDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGLGIHWLVPRLGEFTALYPE 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL +I  HAY +P Y+K+   P 
Sbjct: 130 IRISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFSIGFHAYCSPEYIKHFGTPR 188

Query: 182 SIQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++ELD H LI   D  +P  +++ +WL    R    PR    +VN+ L +++ C  G G
Sbjct: 189 TLEELDNHRLIMLSDSQVPPHLQNRSWLVDAGRNGSGPREPYFKVNNILGLVRACQQGLG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LPDY+V+D   LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 249 IAALPDYLVEDPNRLVQLFGEEDSIQLDTYFVYPEELKTVARVQVFRDFVVNKAQRW 305


>gi|307944265|ref|ZP_07659606.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307772611|gb|EFO31831.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 298

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 147/299 (49%), Positives = 199/299 (66%), Gaps = 3/299 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A++GSFTHA + LH+SQS++SRQ+SGLE ++G+ LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAAAQAGSFTHAGDTLHMSQSAVSRQVSGLEHDLGVPLFHRHARGLLLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KLE  Q  L +S  KPSG LR+ TT+ LG   L   + EF+ LYP++
Sbjct: 61  GELLYRTARDVLMKLEAVQGRLTDSKEKPSGVLRVTTTVGLGSTWLTSRISEFVDLYPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL+ D+ ++D+ M  AD AIRLR+P Q   LIQRKL T+H H +A+P YL     P S
Sbjct: 121 ELQLLFDDDELDLGMREADVAIRLRQPTQ-PDLIQRKLFTVHFHVFASPDYLSRFGAPES 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++LD H LITFG+  P  +   NWL T  R  G+PR   L++N+ L+I +    G GIA
Sbjct: 180 TEDLDNHRLITFGEQAPSFLRGMNWLQTAGRAPGDPRSPILRINNLLAIRRAVQSGIGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDYIV+  P L R++ D+    PSF  YF YP  LKNT ++ AFR F+   A  W+F
Sbjct: 240 MLPDYIVERAPELKRVLSDIEEKVPSFDTYFVYPSELKNTARITAFREFLLSNAEKWEF 298


>gi|154246693|ref|YP_001417651.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160778|gb|ABS67994.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 296

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 138/297 (46%), Positives = 197/297 (66%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+V A +GSFTHA E L LSQS++SRQ+S LETE+ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLKVFHVAAEAGSFTHAGETLGLSQSAVSRQVSALETELKVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   EV+ KLE+ + +L +S  KP+G+LR+ TT+ LG + L   + EF+ L+PDI
Sbjct: 61  GELLYRTAHEVFLKLESARAQLTDSREKPNGELRVTTTVGLGTHWLTARVGEFVELFPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQLIL ++++D++M  AD AIR+R+P+Q   L+QR+L T+H HAYA+  YLK    P S
Sbjct: 121 RIQLILTDEELDLAMREADVAIRMRQPVQ-PDLVQRRLFTVHFHAYASADYLKRHGHPRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I ELDKH ++  G  IP   +  NWL    R    PR+   +VNS L + +    G GI 
Sbjct: 180 IDELDKHRILLLGGPIPPYFQGLNWLEHAGRDGSTPRVPAFEVNSVLGLKRAVERGVGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LPDY+  D  +LV++  D  TP    YF Y + +++  +++ FR+F+  KA+ W +
Sbjct: 240 TLPDYLSDDASSLVQLFTDRETPKLEAYFTYAQEMRSVARIQVFRDFLISKAQRWNY 296


>gi|319405281|emb|CBI78895.1| transcriptional regulator, LysR family [Bartonella sp. AR 15-3]
          Length = 301

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 150/300 (50%), Positives = 209/300 (69%), Gaps = 2/300 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  DW+KLRVF+  A +GSFTHAA++LHLSQS+ISRQ+S LE +V + LF RHARGL LT
Sbjct: 3   LPLDWNKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSSLEQDVRVPLFQRHARGLILT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   ++  KLE T+++L ES  KP+G LR+ +T  +G   L  ++ EFL LY 
Sbjct: 63  EQGEILYRTAHDILMKLENTRLQLSESCEKPTGHLRVTSTFGIGAGWLVEHIPEFLSLYS 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQL+ D++++D++M YADCAIRL +P Q   LIQRKL T+HMH YA+ +Y+ N  +P
Sbjct: 123 DMQIQLLFDDEELDLTMRYADCAIRLHQP-QQPDLIQRKLFTVHMHVYASENYIANYGKP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + ELD+H +I+FG+ +P  +   NWL    +     R+S LQ+N+ +SI    +   G
Sbjct: 182 EKLSELDQHRIISFGEPVPPYLVGLNWLQRAGKSGDSVRVSILQINNIISIKNALMRDLG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV ++  L+R+  D+   PSF  +FCYP ALKN+ KL  FR++IFLKAR W F
Sbjct: 242 IAVLPDYIVNNDEKLMRLFPDMSDIPSFDTFFCYPIALKNSAKLNVFRDYIFLKARKWSF 301


>gi|146338405|ref|YP_001203453.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146191211|emb|CAL75216.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 307

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 133/297 (44%), Positives = 189/297 (63%), Gaps = 2/297 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTE
Sbjct: 10  DMDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELAVSLFHRHARGLILTE 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L R   +V+ +L+  + +L +S  +PSG L+I TT  +G N L   L EF  +YP+
Sbjct: 70  QGDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGVGINWLIPRLGEFTAMYPE 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL  I  HAY +P Y+K    P 
Sbjct: 130 IRISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFAISFHAYCSPEYVKRFGTPR 188

Query: 182 SIQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ ELD H +I   D  +   +++ NWL    R    PR +  +VN+ L +++ C  G G
Sbjct: 189 TLDELDDHRIIMLADGQVAPHLQNRNWLVDAGRNGSGPREAYFKVNNILGLVRACQQGLG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LPDY+V++N  LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 249 IAALPDYLVEENSRLVQLFGESDSIQLDTYFVYPEELKTVARVQVFRDFVVSKAQRW 305


>gi|91224247|ref|ZP_01259510.1| putative transcription regulator protein [Vibrio alginolyticus
           12G01]
 gi|91191158|gb|EAS77424.1| putative transcription regulator protein [Vibrio alginolyticus
           12G01]
          Length = 307

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/290 (30%), Positives = 141/290 (48%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP I++ L 
Sbjct: 67  EYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLISEFLARYPKIEVDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K +D+  D  D  IR+ + + SS+LI ++L        A+P YL+    P    +L 
Sbjct: 127 LEDKMVDLVKDGFDLGIRIGE-LTSSNLIAKRLAPCKSVLCASPDYLEEFGTPQKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +          F                   VN+  +I Q  + GSGIA LP +
Sbjct: 186 GHNCLRYSYFRGGVEWMF---INNGSEYKVLPKGNFIVNNSEAIRQLLLRGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   +    NL  +ME+   P   +Y  +PE      K++AF +FI  K 
Sbjct: 243 IAGRDFAAGNLKPVMEEYSLPEHAIYAVFPERKHMPLKVRAFIDFISEKL 292


>gi|28900071|ref|NP_799726.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260880646|ref|ZP_05893001.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|28808354|dbj|BAC61559.1| putative transcription regulator protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308091857|gb|EFO41552.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
          Length = 307

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/290 (30%), Positives = 140/290 (48%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP I++ L 
Sbjct: 67  EYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLISEFLARYPKIEVDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K +D+  D  D  IR+ + + SS+LI ++L        A+P YL     P    +L 
Sbjct: 127 LEDKMVDLVKDGFDLGIRIGE-LSSSNLIAKRLAPCKSVLCASPDYLAEFGTPQKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +          F                   VN+  +I Q  + GSGIA LP +
Sbjct: 186 SHNCLRYSYFRGGVEWMF---INNGSEYKVLPKGNFIVNNSEAIRQLLLRGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   +    NL  +ME+   P   +Y  +PE      K++AF +FI  K 
Sbjct: 243 IAGRDFAAGNLKPVMEEYSLPEHAIYAVFPERKHMPLKVRAFIDFISEKL 292


>gi|269965595|ref|ZP_06179708.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829663|gb|EEZ83899.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|328470054|gb|EGF40965.1| transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 307

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 89/290 (30%), Positives = 140/290 (48%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP I++ L 
Sbjct: 67  EYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLISEFLARYPKIEVDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K +D+  D  D  IR+ + + SS+LI ++L        A+P YL     P    +L 
Sbjct: 127 LEDKMVDLVKDGFDLGIRIGE-LTSSNLIAKRLAPCKSVLCASPDYLAEFGTPQKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +          F                   VN+  +I Q  + GSGIA LP +
Sbjct: 186 SHNCLRYSYFRGGVEWMF---INNGSEYKVLPKGNFIVNNSEAIRQLLLRGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   +    NL  +ME+   P   +Y  +PE      K++AF +FI  K 
Sbjct: 243 IAGRDFAAGNLKPVMEEYSLPEHAIYAVFPERKHMPLKVRAFIDFISEKL 292


>gi|148258015|ref|YP_001242600.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410188|gb|ABQ38694.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 307

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 133/297 (44%), Positives = 189/297 (63%), Gaps = 2/297 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTE
Sbjct: 10  DMDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELAVSLFHRHARGLILTE 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L R   +V+ +L+  + +L +S  +PSG L+I TT  +G N L   L EF  LYP+
Sbjct: 70  QGDLLFRTAHDVFMQLQAARAKLTDSRERPSGDLKITTTPGVGINWLIPRLGEFTSLYPE 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I LI+ ++++D+SM  AD AIR RKP Q   LIQRKL  I  HAY +P Y+K    P 
Sbjct: 130 IRISLIVTDEELDLSMREADVAIRTRKPTQ-PDLIQRKLFAISFHAYCSPEYVKRFGTPR 188

Query: 182 SIQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ ELD H +I   D  +   +++ +WL    R    PR +  +VN+ L +++ C  G G
Sbjct: 189 TLDELDDHRIIMLADGQVAPHLQNRSWLVDAGRNGSGPREAYFRVNNILGLVRACQQGLG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LPDY+V++N  LV++  +  +     YF YPE LK   +++ FR+F+  KA+ W
Sbjct: 249 IAALPDYLVEENSRLVQLFGESDSIQLDTYFVYPEELKTVARVQVFRDFVVSKAQRW 305


>gi|153824339|ref|ZP_01977006.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|149741893|gb|EDM55922.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
          Length = 302

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 146/297 (49%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + VF  V   GSF+ AA++L +++S++S+++S LE ++GI+L  R  R L+LT
Sbjct: 1   MLTTFSSIPVFVAVVECGSFSLAAKKLKITKSAVSKRLSQLEDDLGIRLINRTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   S+           + E   +P GKL+I   +  G   +   + +F+ +YP
Sbjct: 61  EAGERYYYHVSQALSYARQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L L+++ +D+     D AIR+   + +S+L+ ++LVT      A+P YL    EP
Sbjct: 121 KVEIDLQLEDQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCKSVLCASPEYLARYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +          F+      + +       L VN+  +I +  + G G
Sbjct: 180 EKPADLLEHNCLVYTYFRGGNEWTFH---HQQQEVKVIPKGNLTVNNSEAIRRASLAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP ++V  +     L  +M     P   VY  +PE      K++AF +F+  K 
Sbjct: 237 IAQLPTFLVSKDLAGGALQSVMTHYSLPVHAVYAVFPERKHLPYKVRAFIDFLQQKL 293


>gi|209884266|ref|YP_002288123.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
 gi|209872462|gb|ACI92258.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
          Length = 297

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 131/296 (44%), Positives = 188/296 (63%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG+L++ T+  LG N L   L EF  LYP+I
Sbjct: 61  GDLLFRTAHDVFMQLQAARAKLTDSRERPSGELKVTTSPGLGINWLVPRLTEFTSLYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++++D+SM  AD A+R RKP Q   LIQRKL +I  HAY +P Y K    P +
Sbjct: 121 RLSLTLTDEELDLSMREADVALRTRKPTQ-PDLIQRKLFSIGFHAYCSPDYAKKFGTPRT 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++LD H LI     ++P  +++ NWL    R    PR    +VN+ L +++ C  G GI
Sbjct: 180 LEDLDNHRLIVLNAQILPPHLQNRNWLIEAGRNGSGPREPFFKVNNVLGLVRACQQGIGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+V +   LV++  +  +     YF YPE LK   +++ FR+FI  KA+ W
Sbjct: 240 AALPDYLVDETNRLVQLFGEDDSIQLDAYFVYPEELKAVARVQVFRDFIVSKAQRW 295


>gi|262173801|ref|ZP_06041478.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
 gi|261891159|gb|EEY37146.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
          Length = 304

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 147/297 (49%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + VF  V   GSF+ AA++L +++S++S+++S LE ++GI+L  R  R L+LT
Sbjct: 1   MLTTFPSIPVFVAVVECGSFSLAAKKLKITKSAVSKRLSQLEDDLGIRLINRTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   S+     +     + E   +P GKL+I   +  G   +   + +F+ +YP
Sbjct: 61  EAGERYYYHVSQALSYAQQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L L+++ +D+     D AIR+   + +S+L+ ++LVT      A+P YL    EP
Sbjct: 121 KVEIDLQLEDQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCQSVLCASPEYLTRHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +          FN      + +       L VN+  +I +  + G G
Sbjct: 180 EKPADLLEHNCLVYSYFRGGSEWTFN---HQQQEVKVIPKGNLTVNNSEAIRRALLAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP ++V  +     L  +M     P   VY  +PE      K++AF +F+  K 
Sbjct: 237 IAQLPTFLVSKDLVRGTLKSVMTQYSLPVHAVYAVFPERKHLPYKVRAFIDFLQQKL 293


>gi|258622673|ref|ZP_05717693.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258626675|ref|ZP_05721500.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581026|gb|EEW05950.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258585050|gb|EEW09779.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 304

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 147/297 (49%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + VF  V   GSF+ AA++L +++S++S+++S LE ++GI+L  R  R L+LT
Sbjct: 1   MLTTFPSIPVFVAVVECGSFSLAAKKLKITKSAVSKRLSQLEDDLGIRLINRTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   S+     +     + E   +P GKL+I   +  G   +   + +F+ +YP
Sbjct: 61  EAGERYYYHVSQALSYAQQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L L+++ +D+     D AIR+   + +S+L+ ++LVT      A+P YL    EP
Sbjct: 121 KVEIDLQLEDQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCQSVLCASPEYLTRHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +          FN      + +       L VN+  +I +  + G G
Sbjct: 180 EKPADLLEHNCLVYSYFRGGSEWTFN---HQQQEVKVIPKGNLTVNNSEAIRRALLAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP ++V  +     L  +M     P   VY  +PE      K++AF +F+  K 
Sbjct: 237 IAQLPTFLVSKDLARGTLKSVMTQYSLPVHAVYAVFPERKHLPYKVRAFIDFLQQKL 293


>gi|149911731|ref|ZP_01900338.1| Transcriptional regulator [Moritella sp. PE36]
 gi|149805204|gb|EDM65222.1| Transcriptional regulator [Moritella sp. PE36]
          Length = 302

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 146/299 (48%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D+  + VF  V   GSF+ AAE+L +++S++S++IS LE  +G++LF R  R + LT
Sbjct: 1   MKDDFSAIPVFVAVVERGSFSSAAEKLGMTKSAVSKRISVLEDNLGVRLFNRTTRSIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +        +         L      P G L+I   +   +  +   +KEFL  YP
Sbjct: 61  EAGERFSDYARNAFVIANEGFAALHNLQGIPKGTLKINAPMTFTRLHIVPYIKEFLDSYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L +D++ + +     D  IR+ + +++SSLI +KL        A+P YL+    P
Sbjct: 121 DVRVILSMDDRIVSLVEGGYDVGIRIGE-LENSSLIAKKLADCKSVLCASPEYLEKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  HN I +   + +   ++ +     +   EP+     VN+  +I++  + G G
Sbjct: 180 SKPEDLSHHNCINYS--LFQGGAEWTFYKDSKKIKLEPK-GNFIVNNSDAILEVLLNGLG 236

Query: 241 IALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  +P +IV ++    R+   M++   P   +Y  YPE      K++ F  FI  K  D
Sbjct: 237 ICQMPTFIVAEHLKSQRLMTFMDEYALPKHAIYAVYPERKHLPEKVRVFIEFISHKLGD 295


>gi|117922232|ref|YP_871424.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614564|gb|ABK50018.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 298

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 91/298 (30%), Positives = 141/298 (47%), Gaps = 7/298 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A ++L LS+S+IS++I+ LE  +GI+L  R  R L+LT+ G+
Sbjct: 4   FSALPIFVTVVECGSFSAAGQKLGLSKSAISKRITQLEQHLGIQLLQRTTRSLSLTDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +            +     + E    P G LRI+  +  G+  +   + EFL  YPDIQ+
Sbjct: 64  RYFEYIRPAVQLTQEGLDAISELQQTPKGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P++  
Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPAYLAQHGSPMTPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +HN + +          F+    V R          QVN+  +I Q C+ G GIA L
Sbjct: 183 GLTQHNCLFYSYFQDGVEWSFHSPYGVQR---VQPKGNYQVNNSDAIHQACLDGLGIANL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           P +IV+ +     L  I+ D   P   +Y  YP+      K+     F+  K    KF
Sbjct: 240 PRFIVESDLQAGRLQTILTDFPLPEHGIYAVYPQRKYLPTKVTVLIGFLMEKLASGKF 297


>gi|254227935|ref|ZP_04921365.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262396082|ref|YP_003287935.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151939431|gb|EDN58259.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262339676|gb|ACY53470.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 307

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 89/290 (30%), Positives = 140/290 (48%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP I++ L 
Sbjct: 67  EYASQALNLAQQGVDAVSELQGSPQGRLKITVPMSFGVLHIAPLISEFLARYPKIEVDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K +D+  D  D  IR+ + + SS+LI ++L        A+P YL     P    +L 
Sbjct: 127 LEDKMVDLVKDGFDLGIRIGE-LTSSNLIAKRLAPCKSVLCASPDYLAEFGTPQKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +          F                   VN+  +I Q  + GSGIA LP +
Sbjct: 186 SHNCLRYSYFRGGVEWMF---INNGSEYKVLPKGNFIVNNSEAIRQLLLRGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   +    NL  +ME+   P   +Y  +PE      K++AF +FI  K 
Sbjct: 243 IAGRDFAAGNLKPVMEEYSLPEHAIYAVFPERKHMPLKVRAFIDFISEKL 292


>gi|114045851|ref|YP_736401.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113887293|gb|ABI41344.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 298

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 141/301 (46%), Gaps = 8/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L +F  V   GSF+ A ++L LS+S+IS++I+ LE  +GI+L  R  R L+LT+
Sbjct: 1   MDHFSALPIFVTVVECGSFSAAGQKLGLSKSAISKRITQLEQHLGIQLLQRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++            +     + E    P G LRI+  +  G+  +   + EFL  YPD
Sbjct: 61  AGARYFEYIRPAVQLTQEGLDAISELQQTPKGNLRISVPMVFGRLYIAPLIAEFLKRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P+
Sbjct: 121 IQLQMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCFSVICASPAYLAQHGSPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +HN + +          F    + D           QVN+  +I + C+ G GI
Sbjct: 180 VPSKLTQHNCLFYSYFQDGVEWSFQ---SPDGMQRIQPKGNYQVNNSDAIHRACLDGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A LP +IV+ +     L  I+ D   P   +Y  YP+      K+     F+  K    K
Sbjct: 237 ANLPRFIVESDLQAGRLQTILTDFPLPEHGIYAVYPQRKYLPTKVTVLIEFLMEKLASGK 296

Query: 299 F 299
           F
Sbjct: 297 F 297


>gi|326797070|ref|YP_004314890.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326547834|gb|ADZ93054.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 302

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/291 (29%), Positives = 140/291 (48%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + +   V  SGSF+ AAE+L +S+S+IS+++S LE ++G+KL +R  R L+LTE G   
Sbjct: 6   DISILVTVVESGSFSKAAERLGISKSAISKRVSQLEAQLGVKLLHRTTRKLSLTEAGEHF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +     +   +     + +   +P G+L+I+  +  G+  L     +FL  YP I I L
Sbjct: 66  FKHAQIAHQASKDAIDAVAQLQGEPQGRLKISCPMSFGRLHLAPLTPKFLKKYPKITIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D+K  DI     D AIR    +  S+L+ RKL  +     A+  YL     P  ++ L
Sbjct: 126 VMDDKISDIIGQGFDLAIR-GGVLPDSNLVVRKLAPLRSVLCASQTYLNQHGVPAELEAL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + F     K      W    +  +    IS   QVNS  ++ +  + G GI  LP
Sbjct: 185 SSHNCLAFTYSNDK----REWTFMKEGEVQRISISGNYQVNSSEALKEAIIQGLGIGRLP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +I        NLV + E+   P  ++Y  YPE      K++ F +FI  +
Sbjct: 241 TFIAGPEIKKGNLVALFEEYEMPRQSMYAVYPERHYLPKKVRVFIDFIIEQ 291


>gi|114570697|ref|YP_757377.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114341159|gb|ABI66439.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 297

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 114/297 (38%), Positives = 181/297 (60%), Gaps = 2/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+ F+  A++GS T AAE L LSQS++SRQI+ LE ++G+ LF+RHARGL  TE 
Sbjct: 1   MDWDKLKTFHAAAQAGSLTKAAEMLGLSQSAVSRQIAALENDLGVTLFHRHARGLIPTEP 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+    E+  K+   +  +Q++  +PSG+L++     LG   L   L EF   YP+I
Sbjct: 61  GNLLYGAAHEIASKVAIAEAHVQDARDEPSGELKVTAPTALGAIWLAPRLAEFNTEYPNI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L+LD+ ++D++   A+  IR   P   + L+QRKL+++  H YA+  Y++    P +
Sbjct: 121 RIRLMLDDHELDLAGLEAEVGIR-PWPSTQNDLVQRKLLSVRQHLYASHDYVERKGSPKA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGI 241
             ELD H +I +G      +   +W A   R  G  PR + ++VN+   +M+    G GI
Sbjct: 180 PSELDDHAIIYYGPPQLAPIPGLDWAAKAGRADGATPRPAVIEVNTIYGVMKAVEAGMGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A LPDY+ ++N  LVR++ D+  P F V+F YP  L+ + ++ AFR+F+  +AR W+
Sbjct: 240 AALPDYVARENTKLVRVLPDLDGPDFEVFFVYPSELRGSRRIVAFRDFLIEQARRWQ 296


>gi|229523106|ref|ZP_04412518.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229339956|gb|EEO04966.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 302

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 145/297 (48%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + VF  V   GSF+ AA++L  ++S++S+++S LE ++GI+L  R  R L+LT
Sbjct: 1   MLTTFSSIPVFVAVVECGSFSLAAKKLKTTKSAVSKRLSQLEDDLGIRLINRTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   S+           + E   +P GKL+I   +  G   +   + +F+ +YP
Sbjct: 61  EAGERYYYHVSQALSYARQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L L+++ +D+     D AIR+   + +S+L+ ++LVT      A+P YL    EP
Sbjct: 121 KVEIDLQLEDQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCKSVLCASPEYLARYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +          F+      + +       L VN+  +I +  + G G
Sbjct: 180 EKPADLLEHNCLVYTYFRGGNEWTFH---HQQQEVKVIPKGNLTVNNSEAIRRASLAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP ++V  +     L  +M     P   VY  +PE      K++AF +F+  K 
Sbjct: 237 IAQLPTFLVSKDLAGGVLQSVMTHYSLPVHAVYAVFPERKHLPYKVRAFIDFLQQKL 293


>gi|87118407|ref|ZP_01074306.1| putative transcription regulator protein [Marinomonas sp. MED121]
 gi|86166041|gb|EAQ67307.1| putative transcription regulator protein [Marinomonas sp. MED121]
          Length = 312

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 14/301 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ L +F  +  +GSF+ A E L+ S+S++S++I+ LE E+G +L  R  R LTLTE G
Sbjct: 3   SFNALPIFVALVETGSFSKAGEHLNSSKSAVSKRITQLENELGAQLLNRTTRSLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   S+     +  +  +     KP GKL+++  +  G+  +   +  F+ LYPDIQ
Sbjct: 63  EAYYDYASQALALAQEAENAVSLMQAKPKGKLKLSVPMTFGRLYIAPIIPAFMALYPDIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++I+D+K  D      D  IR+ + ++ SSL+ +KL     +  AAP YL     P   
Sbjct: 123 IEMIMDDKRQDFIKQGFDIGIRIGQ-LEDSSLVAKKLADCQSYLCAAPAYLDKQGTPKKP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP--------IGEPRISCLQVNSYLSIMQYC 235
           ++L +HN + +     +  +D+ +L    R         I        +VN+  ++ +  
Sbjct: 182 EDLTRHNCLYYSYF--RAGQDWQFLKKSVRHRNYQDSDFIRVAAKGNYRVNNSEALYEAA 239

Query: 236 VLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G GI  +P +IV        L+ ++ D   P   +Y  +PE    T K++ F +F+  
Sbjct: 240 LAGLGIVNMPTFIVGPAIRETQLIPLLTDYPQPLHGIYAIFPERKHLTAKVRVFIDFLQE 299

Query: 293 K 293
           K
Sbjct: 300 K 300


>gi|220925657|ref|YP_002500959.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219950264|gb|ACL60656.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 296

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 129/297 (43%), Positives = 193/297 (64%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDK+R+F  VA +GSFT A + + LSQS++SRQIS LE E+   LF+RHARGL LTEQ
Sbjct: 1   MDWDKIRIFLNVAEAGSFTKAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   ++  +LETT+  L E+S +PSG L++ TT+ LG   L   + EFL L+P++
Sbjct: 61  GDLLFRAARDMKMRLETTRARLVETSERPSGDLKVTTTVGLGTAWLSQRVSEFLDLHPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+LIL ++++D++M  AD AIRLR+P Q   LIQR+L T+H H +A+  Y+K   EP S
Sbjct: 121 RIELILTSEELDLAMREADVAIRLRRPAQ-PDLIQRRLFTVHYHVFASTEYIKRFGEPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +LD+H +++FG   P  +   +WL+T  R   EPR     VN+  ++      G+GI 
Sbjct: 180 IDDLDRHRIVSFGGDQPSYLMATHWLSTAGREGREPRTVHFTVNNISALQVAVETGAGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY    NP LV+++ D+  P+   Y  Y E +++  +++AFR+F+  KA+ W +
Sbjct: 240 ILPDYAANGNPQLVQVLRDIEMPNLESYLVYAEEMRSVARVQAFRDFLVAKAQRWTY 296


>gi|262164197|ref|ZP_06031935.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|262026577|gb|EEY45244.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 304

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 147/297 (49%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + VF  V   GSF+ A+++L +++S++S+++S LE ++GI+L  R  R L+LT
Sbjct: 1   MLTTFPSIPVFVAVVECGSFSLASKKLKITKSAVSKRLSQLEDDLGIRLINRTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   S+     +     + E   +P GKL+I   +  G   +   + +F+ +YP
Sbjct: 61  EAGERYYYHVSQALSYAQQGMDAVTELQGEPQGKLKITAPMSFGVLHIAPIIADFISIYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L L+++ +D+     D AIR+   + +S+L+ ++LVT      A+P YL    EP
Sbjct: 121 KVEIDLQLEDQMVDLIEGGFDLAIRIGH-LPTSNLVAKRLVTCRSVLCASPEYLTRHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +          F+      + +       L VN+  +I +  + G G
Sbjct: 180 EKPADLLEHNCLVYSYFRGGSEWTFH---NQQQEVKVIPKGNLTVNNSEAIRRALLAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP ++V  +     L  +M     P   VY  +PE      K++AF +F+  K 
Sbjct: 237 IAQLPTFLVSKDLARGTLKSVMTQYSLPVHAVYAVFPERKHLPYKVRAFIDFLRQKL 293


>gi|260770382|ref|ZP_05879315.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|260615720|gb|EEX40906.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
          Length = 306

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + +F  V   GSF+ AAE+L +++S++S++++ LE E+GI+L  R  R L+LT
Sbjct: 2   MDNTFAAIPIFVAVVECGSFSSAAEKLSITKSAVSKRVTQLEDELGIRLLNRTTRKLSLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   S+     +     + E   +P GKL+I   +  G   +   + EFL  YP
Sbjct: 62  EAGERYYYHVSQALSFAQQGSDAVTELQGEPQGKLKITAPMSFGVLHVATLIAEFLTRYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L L+++ +D+     D AIR+   +  S+L+ ++LV        +P YL     P
Sbjct: 122 KVEIDLQLEDQMVDLVQGGFDLAIRIGH-LPVSNLVAKRLVRCRSVLCCSPDYLSRHPAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +          F                 L +N+  +I +  + G G
Sbjct: 181 QKPADLLQHNCLVYSYFRGGSEWTFT---QNGSDFKVIPTGNLSINNSEAIRRALLDGLG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  LP ++V  +     L  IM D   P   +Y  +PE      K++AF  FI  K 
Sbjct: 238 IGQLPTFLVSKDIRAGKLHAIMTDYPLPEHAIYAVFPERKHLPHKVRAFMEFISEKL 294


>gi|242239561|ref|YP_002987742.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242131618|gb|ACS85920.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 335

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 142/293 (48%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D+  L VF  V  SGSF+ A ++L+LS+S++S+++S LE  +G++L +R  R L+LT
Sbjct: 1   MN-DFSSLPVFVAVVESGSFSAAGKRLNLSKSAVSKRLSQLEERLGVRLLHRTTRQLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  +          +  +  + +   +P G LR++  +  G   +   L  FL  YP
Sbjct: 60  EAGSDYYDYAQRALQLAQQAEDAVTQLQERPQGTLRVSAPMAFGLRHISPLLPIFLHRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L++D++ +D+  +  D A+R+ + +  SSLI R+L        AAP YL+    P
Sbjct: 120 EVSVDLLMDDRVVDLVGEGFDLAVRIGQ-LPDSSLIARRLAPCFSVLCAAPDYLQRTDVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I  L  HN + +          F      D P+        + N+  ++    + G G
Sbjct: 179 QHIDALKHHNCLFYLYFKGGVEWSFE---GPDGPVRFQPHGNYRANNSEALFDALLAGVG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +P +IV        LV ++     P  ++Y  YPE      K++ F +F+
Sbjct: 236 ICQVPKFIVGPALSEGRLVEVLPQYRLPEHSIYAVYPERRHLPAKVRVFIDFL 288


>gi|260777406|ref|ZP_05886300.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607072|gb|EEX33346.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 308

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 143/287 (49%), Gaps = 7/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  SGSF+ AAE+LH+++S++S++I+ LE E+GI+L  R  R L+LTE G + +  
Sbjct: 9   VFVAVVESGSFSTAAEKLHITKSAVSKRINQLEDELGIRLLNRTTRKLSLTEAGQRYYDY 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            ++     +     + E   KP+GKL+I   +  G   +   + EFL LYPD++I L L+
Sbjct: 69  VAQSLSLAQQGIDAVTELQGKPTGKLKITAPMSFGVLHVAPLVAEFLALYPDLEIDLQLE 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  D  D  IR+   +  S+L+ ++L T      A+  YL    EP    +L  H
Sbjct: 129 DQMVDLVQDGFDLGIRIGH-LPLSNLVAKRLATCRSILCASQSYLDEHGEPEKPSDLSLH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + +          F    +   P+       L VN+  +I +  + G GI  LP +IV
Sbjct: 188 NCLRYAYFRGGSEWTFE---SPTGPVSVVPKGKLVVNNSEAIRRALLEGLGIGQLPTFIV 244

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +     L  IM     P  +VY  +PE      K++ F +FI  K
Sbjct: 245 AKDIAAGKLKPIMTAYTLPPHSVYAVFPERKHLPLKVRVFVDFIAEK 291


>gi|170746996|ref|YP_001753256.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653518|gb|ACB22573.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 296

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 131/297 (44%), Positives = 193/297 (64%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDK+R+F  VA +GSFT A + + LSQS++SRQIS LE E+   LF+RHARGL LTEQ
Sbjct: 1   MDWDKIRIFLNVAEAGSFTKAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLLLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   ++  +LE T+  L E+S +P+G L++ TT+ LG + L   + EFL LYPD+
Sbjct: 61  GDLLFRAARDMKLRLENTRARLVETSERPTGDLKVTTTVGLGTSWLSQRVGEFLDLYPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+LIL N+++D++M  AD AIR+R+P Q   LIQR+L T+H HA+A+P Y+K   EP +
Sbjct: 121 RIELILTNEELDLAMREADVAIRMRRPAQ-PDLIQRRLFTVHYHAFASPDYVKRFGEPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+ELD H L++FG   P  +   +WLA   R   E R   L VN+  ++ +    G+GI 
Sbjct: 180 IEELDDHRLVSFGGNEPSYLLAAHWLADAGREGRERRQVHLTVNNIGALQRAMEAGAGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY V     LV+++ +   PS   Y  Y E +++  +++AFR+F+  KA+ W +
Sbjct: 240 ILPDYAVDGGQQLVQVLRETEMPSLESYLVYAEEMRSVARVQAFRDFLVSKAQRWTY 296


>gi|239787490|emb|CAX83960.1| Transcriptional regulator, LysR family [uncultured bacterium]
          Length = 296

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 127/294 (43%), Positives = 179/294 (60%), Gaps = 1/294 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GSFTHA E+L+LSQS+ISRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSFTHAGERLNLSQSAISRQISALEESLNVSLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V+ KL   +  L E+  +P G L I TT+  G   L   L++FL +YPDI
Sbjct: 61  GDLLYRTVHDVFAKLSQVEARLGENKDRPEGPLTITTTVAFGSLWLTPRLRQFLEMYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L++ ++D+ M  AD AIR   P Q  +LIQR L T+    YA+  YLK    P S
Sbjct: 121 EVSLLLNDSELDLGMREADVAIRFTPPRQ-PNLIQRPLYTLRYQVYASTEYLKKYGMPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H +IT+GD      ++ NWL       GE R   L+VN+   I +    G GIA
Sbjct: 180 PDDLSNHRIITYGDDGKLPADNVNWLLRAMAKEGETRRPVLRVNNIYGIFRAVRSGLGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP+Y   + PNLV+++ ++  P    YF YPE L++T ++  FR+F+  K  +
Sbjct: 240 ALPEYFDHEAPNLVQVLPELQGPLVEAYFVYPEELRHTKRIVVFRDFLIRKLSE 293


>gi|163850525|ref|YP_001638568.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|218529222|ref|YP_002420038.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|240137590|ref|YP_002962061.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens AM1]
 gi|254560062|ref|YP_003067157.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|163662130|gb|ABY29497.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|218521525|gb|ACK82110.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
 gi|240007558|gb|ACS38784.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens AM1]
 gi|254267340|emb|CAX23172.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens DM4]
          Length = 296

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 128/297 (43%), Positives = 195/297 (65%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDK+R+F  VA +GSFT A + + LSQS++SRQIS LE E+   LF+RHARGL LTEQ
Sbjct: 1   MDWDKIRIFLNVAEAGSFTRAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   ++  +LE T+  L E+S +PSG LR+ TT+ LG + L   + EFL LYPD+
Sbjct: 61  GDLLFRAARDMKLRLENTRARLVETSERPSGDLRVTTTVGLGTSWLSQRVSEFLDLYPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L+L N+++D++M  AD AIR+R+P Q   LIQR+L T+H HA+A+P Y+K   EP +
Sbjct: 121 RIELVLTNEELDLAMREADIAIRMRRPAQ-PDLIQRRLFTVHYHAFASPDYVKRFGEPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +LD+H L++FG   P  +   ++LA++ R   E R     VN+  ++ +    G G+ 
Sbjct: 180 ISDLDEHRLVSFGGNEPSYLLATHYLASIGREGDERRPVHFTVNNITALHKAMEAGVGVG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY V  N +LV+++ +   P+   Y  Y E +++  +++AFR+F+  KA+ W +
Sbjct: 240 ILPDYAVDGNESLVQVLRESEMPTMESYLVYAEEMRSVARVQAFRDFLVNKAQRWTY 296


>gi|315181449|gb|ADT88362.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 306

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 138/297 (46%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + +F  V   GSF+ AAE+L +++S++S++++ LE E+GI+L  R  R L+LT
Sbjct: 2   MDNTFAAIPIFVAVVECGSFSSAAEKLSITKSAVSKRVTQLEDELGIRLLNRTTRKLSLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   S+     +     + E   +P GKL+I   +  G   +   + EFL  YP
Sbjct: 62  EAGERYYYHVSQALSFAQQGSDAVTELQGEPQGKLKITAPMSFGVLHVATLIAEFLTRYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L L+++ +D+     D AIR+   +  S+L+ ++LV        +P YL     P
Sbjct: 122 KVEIDLQLEDQMVDLVQGGFDLAIRIGH-LPVSNLVAKRLVRCRSVLCCSPDYLSRHPAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +          F                 L VN+  +I +  + G G
Sbjct: 181 QKPADLLQHNCLVYSYFRGGSEWTFT---QNGADFKVIPTGNLSVNNSEAIRRALLDGLG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  LP ++V  +     L  IM D   P   +Y  +PE      K++AF  FI  K 
Sbjct: 238 IGQLPTFLVSKDIRAGKLHAIMTDYPLPEHAIYAVFPERKHLPHKVRAFMTFISEKL 294


>gi|144898697|emb|CAM75561.1| redox-sensitive transcriptional activator [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 297

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 127/296 (42%), Positives = 184/296 (62%), Gaps = 3/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGEVLNLSQSAVSRQISALEESLNLPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   +++ KL  T+  L ES  +P G L+I TT+  G   L   +KEFL LYPDI
Sbjct: 61  GELLYKTARDIFSKLAMTEALLTESRERPQGPLKITTTVAFGSLWLTPRIKEFLDLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L + ++D++M  AD AIR+  P Q   LIQR L+T+H + YAAP YLK    P S
Sbjct: 121 AVTMVLYDGELDLAMREADVAIRMMPPRQ-PDLIQRHLLTMHYNVYAAPEYLKKYGMPKS 179

Query: 183 IQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++LD H+++ +GD   +   + + NWL          R   L+VN+   I +    G G
Sbjct: 180 AEDLDNHHIVIYGDDARVSPPVANVNWLLETGAQPSVQRKPVLEVNNIYGIYRAVKSGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +A LPDY+  +  NLV I+ ++  P    YF YPE L+++ ++  FR+F+  K ++
Sbjct: 240 VAALPDYMTTEADNLVHILPELKGPKLDAYFVYPEELRHSKRITVFRDFLLSKIQE 295


>gi|188580293|ref|YP_001923738.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179343791|gb|ACB79203.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 296

 Score =  296 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 127/297 (42%), Positives = 195/297 (65%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDK+R+F  VA +GSFT A + + LSQS++SRQIS LE E+   LF+RHARGL LTEQ
Sbjct: 1   MDWDKIRIFLNVAEAGSFTRAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   ++  +LE T+  L E+S +PSG LR+ TT+ LG + L   + EFL LYPD+
Sbjct: 61  GDLLFRAARDMKLRLENTRARLVETSERPSGDLRVTTTVGLGTSWLSQRVSEFLDLYPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L+L N+++D++M  AD AIR+R+P Q   LIQR+L T+H HA+A+P Y+K   EP +
Sbjct: 121 RIELVLTNEELDLAMREADIAIRMRRPAQ-PDLIQRRLFTVHYHAFASPDYVKRFGEPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +LD+H L++FG   P  +   ++LA++ R   + R     VN+  ++ +    G G+ 
Sbjct: 180 IADLDEHRLVSFGGNEPSYLLATHYLASIGREGDDRRPVHFTVNNIAALHKAMEAGIGVG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY V  N +LV+++ +   P+   Y  Y E +++  +++AFR+F+  KA+ W +
Sbjct: 240 ILPDYAVDGNESLVQVLRESEMPTMESYLVYAEEMRSVARVQAFRDFLVNKAQRWTY 296


>gi|240850166|ref|YP_002971559.1| transcription regulator, LysR family [Bartonella grahamii as4aup]
 gi|240267289|gb|ACS50877.1| transcription regulator, LysR family [Bartonella grahamii as4aup]
          Length = 301

 Score =  296 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 152/299 (50%), Positives = 209/299 (69%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLRVF+  A +GSFTHAA++LHLSQS++SRQ+S LE EVG+ LF RHARGL LTE
Sbjct: 4   PLDWDKLRVFHAAAEAGSFTHAAQKLHLSQSAVSRQVSALEQEVGVSLFQRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE+ +++L ES  KP+G LR+ +T  +G   +   + EFL LYPD
Sbjct: 64  QGETLYRTAHDVLMKLESVRLQLSESYAKPTGHLRVTSTFGMGAGWIAERMPEFLSLYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QL+L ++++D++M +ADCA+RL +P Q   LIQRKL TIHMH YA+  Y+ N  +P 
Sbjct: 124 MQVQLLLSDEELDLTMCHADCAVRLHQP-QQPDLIQRKLFTIHMHVYASEKYIANYGKPE 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +LD+H +I+FG+ +P  +   NWL    R  G  R+S LQ+N+ +SI    +   GI
Sbjct: 183 KLSDLDEHRIISFGEPVPPYLSGLNWLEKAGRSDGSLRVSVLQINNIISIKNALMRDLGI 242

Query: 242 ALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A+LPDYIV ++ +LVR+  D V  PSF  +FCYP  LKN  +L AFR++IFLKAR W F
Sbjct: 243 AVLPDYIVNNDEHLVRLFPDMVDIPSFDTFFCYPYNLKNLARLNAFRDYIFLKARQWSF 301


>gi|270262453|ref|ZP_06190724.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043137|gb|EFA16230.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 306

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 148/295 (50%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ ++  + +F  V   GSF+ A ++L +++S++S++I+ LE  +G++L +R  R L+LT
Sbjct: 1   MTDNFAAIPLFVAVVECGSFSAAGQRLGITKSAVSKRITQLEGSLGVQLLHRTTRSLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +            +  +  +     +P G LR++  +  G+  +   +  FL   P
Sbjct: 61  EAGEQYFGYARNACAVAQEGEDAITRLQGQPQGILRLSVPMVFGRLHIAPLIPVFLAACP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I +++D+K +D+     D AIR+ + +  SSLI R++   +    AAP YL  C  P
Sbjct: 121 EVEINMMMDDKLVDLVEGGYDLAIRIGR-LADSSLIARRIAPCYSVLCAAPAYLTRCGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L +HN + +     +   ++ +         +PR    QVN+  ++ +  + G G
Sbjct: 180 KDLAQLAQHNCLFYSYY--RAGSEWQFQGPEGAVRFQPR-GNYQVNNSEALREALLAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  +P +IV D+     L+ ++ D   P   +Y  YPE      K+ AF +F+  
Sbjct: 237 VCQMPTFIVGDDLAQGRLIELLPDHKLPEHAIYAVYPERKHVPAKVMAFVDFLLA 291


>gi|170741949|ref|YP_001770604.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196223|gb|ACA18170.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 296

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 130/297 (43%), Positives = 193/297 (64%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDK+R+F  VA +GSFT A + + LSQS++SRQIS LE E+   LF+RHARGL LTEQ
Sbjct: 1   MDWDKIRIFLNVAEAGSFTKAGDDIGLSQSAVSRQISALERELKAPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   ++  +LETT+  L E+S +PSG L++ TT+ LG   L   + EFL L+P++
Sbjct: 61  GDLLFRAARDMKMRLETTRARLVETSERPSGDLKVTTTVGLGTAWLSQRVSEFLDLHPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+LIL N+++D++M  AD AIRLR+P Q   LIQR+L T+H H +A+  Y+K   EP S
Sbjct: 121 RIELILTNEELDLAMREADVAIRLRRPAQ-PDLIQRRLFTVHYHVFASLEYIKRFGEPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I++LDKH +++FG   P  +   +WL+T  R   EPR     VN+  ++      G+GI 
Sbjct: 180 IEDLDKHRIVSFGGDQPSYLMATHWLSTAGREGREPRNVHFTVNNISALQVAVETGAGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY    NP L +++ D+  P+   Y  Y E +++  +++AFR+F+  KA+ W +
Sbjct: 240 ILPDYAANGNPLLQQVLRDIEMPNLESYLVYAEEMRSVARVQAFRDFLVAKAQRWTY 296


>gi|299132022|ref|ZP_07025217.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gi|298592159|gb|EFI52359.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 307

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 130/297 (43%), Positives = 188/297 (63%), Gaps = 2/297 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+S LE E+ + LF+RHARGL LTE
Sbjct: 10  DMDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALEQELSVSLFHRHARGLILTE 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L R   +V+ +L+  + +L +S  +PSG+L++ T+  LG N L   L EF  LYP+
Sbjct: 70  QGDLLFRTAHDVFMQLQAARAKLTDSRERPSGELKVTTSPGLGINWLVPRLTEFTSLYPE 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L L ++++D+SM  AD A+R RKP Q   LIQRKL +I  HAY +P Y K    P 
Sbjct: 130 IRLALTLTDEELDLSMREADVALRTRKPTQ-PDLIQRKLFSIGFHAYCSPDYAKKFGTPR 188

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++ELD H LI      +P  +++ NWL    R    PR    +VN+ L +++ C  G G
Sbjct: 189 TLEELDNHRLIVLNAQNLPPHLQNRNWLIEAGRNGAGPREPFFKVNNVLGLVRACQQGIG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LPDY++ +   L+++  +  +     YF YPE LK+  +++ FR+FI  KA+ W
Sbjct: 249 IAALPDYLIDEANRLLQLFGEDDSIQLDAYFVYPEELKSVARVQVFRDFIVSKAQRW 305


>gi|92118380|ref|YP_578109.1| LysR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801274|gb|ABE63649.1| transcriptional regulator, LysR family [Nitrobacter hamburgensis
           X14]
          Length = 307

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 133/297 (44%), Positives = 185/297 (62%), Gaps = 2/297 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+  LE E+ + LF+RHARGL LTE
Sbjct: 10  DMDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVGALEQELSVALFHRHARGLILTE 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L R T EV+ +L+  + +L +S  +PSG LR+ TT  +G N L   L EF  LYP+
Sbjct: 70  QGDLLFRTTHEVFIQLQAARAKLTDSRERPSGDLRVTTTPGIGINWLIPRLGEFTALYPE 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ LIL ++++D+SM  AD AIR  KP Q   LIQRKL  +  HAY +  Y+K+   P 
Sbjct: 130 IRVSLILTDEELDLSMREADIAIRTHKPTQ-PDLIQRKLFAMGFHAYCSTEYVKHFGTPR 188

Query: 182 SIQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++ELD H +I   D      +++ NWL    R    PR     VN+ L +   C  G G
Sbjct: 189 ALEELDGHRIILLTDTYASAHLQNRNWLIGAGRNGTGPREPYFTVNNILGLFSACKQGLG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LPDY+V +N  LV++  +  +     YF YPE LK+  +++AFR+F+  KA+ W
Sbjct: 249 IAALPDYLVGENNRLVQLFSESDSIQLDTYFVYPEELKSVARIQAFRDFVVSKAQRW 305


>gi|163867959|ref|YP_001609163.1| LysR family transcriptional regulator [Bartonella tribocorum CIP
           105476]
 gi|161017610|emb|CAK01168.1| transcriptional regulator, LysR family [Bartonella tribocorum CIP
           105476]
          Length = 301

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 151/299 (50%), Positives = 209/299 (69%), Gaps = 2/299 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLRVF+  A +GSFTHAA++LHLSQS++SRQ+S LE EVG+ LF RHARGL LT+
Sbjct: 4   PLDWDKLRVFHAAAEAGSFTHAAQKLHLSQSAVSRQVSALEQEVGVSLFQRHARGLILTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE+ +++L ES  KP+G LR+ +T  +G   +   + EFL LYPD
Sbjct: 64  QGETLYRTAHDVLMKLESVRLQLSESYAKPTGHLRVTSTFGMGAGWIAERMPEFLSLYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QL+L ++++D++M +ADCA+RL +P Q   LIQRKL TIHMH YA+  Y+ N  +P 
Sbjct: 124 MQVQLLLSDEELDLTMCHADCAVRLHQP-QQPDLIQRKLFTIHMHVYASEKYIANYGKPE 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +LD+H +I+FG+ +P  +   NWL    R  G  R+S LQ+N+ +SI    +   GI
Sbjct: 183 KLSDLDEHRIISFGEPVPPYLSGLNWLEKAGRNDGSLRVSVLQINNIISIKNALMRDLGI 242

Query: 242 ALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A+LPDYIV ++ +LVR+  D V  PSF  +FCYP  LKN  +L AFR++IFLKAR W F
Sbjct: 243 AVLPDYIVNNDEHLVRLFPDMVDIPSFDTFFCYPYNLKNLARLNAFRDYIFLKARQWSF 301


>gi|238761853|ref|ZP_04622827.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638]
 gi|238699967|gb|EEP92710.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638]
          Length = 304

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 143/285 (50%), Gaps = 7/285 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GSF+ AA +L++++S++S++IS  E E+G++L +R  R L+LT+ G K +  
Sbjct: 9   IFIAVVDAGSFSGAAIKLNITKSAVSKRISQFEEELGVRLLHRTTRRLSLTQAGLKYYDY 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                   +  +  + +   KP G LR++  +  G+  +   +  FL   P ++I +++D
Sbjct: 69  ARSALQLAKEGEDAITQMQDKPQGILRLSAPMAFGRLHISPLIPPFLSQNPGVEINMVMD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +++     D  IR+ + +  S++I R L        A+P YL+    P S  +L +H
Sbjct: 129 DRVVNLVEGGFDMGIRIGQ-LADSTMIARPLAPCTSVLCASPEYLRRHGTPQSPHDLSQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + +   +      FN    V R + +      QVN+  ++    + G GI  +P +IV
Sbjct: 188 NCLFYSYFLGGTEWIFNSHEGVSRFLPK---GNYQVNNSEALYDALLAGLGICQMPKFIV 244

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                +  LV ++ +   P  ++Y  YP+ L    K++ F +++ 
Sbjct: 245 GPALADGRLVSLLPNYRLPKHSIYAIYPQRLHVPAKMRTFLDYLL 289


>gi|83594231|ref|YP_427983.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577145|gb|ABC23696.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 322

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 117/293 (39%), Positives = 175/293 (59%), Gaps = 1/293 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE  + + LF+RHARGL LTE
Sbjct: 25  NMDWDKLRVFHSVAEAGSFTHAGEALNLSQSAVSRQISALEESLKVALFHRHARGLILTE 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L     +V+ KL T + +L E+  +P G L I TT+  G   L   +K F+  YPD
Sbjct: 85  QGELLFDTVHDVFGKLATVEAKLGETKERPEGPLTITTTLSFGAIWLTPRIKRFMDRYPD 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L++ ++D++M  AD A+R   P Q   LIQR+L ++  H +A+P YLK    P 
Sbjct: 145 IDVTLALNDTELDLAMRQADVALRFMPPRQ-PDLIQRQLFSMPYHVFASPDYLKKHGTPR 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++LD H L+ +G+     + + +WL T     G  R   L+VN+   + +    G GI
Sbjct: 204 RVEDLDDHALVVYGEEFKPPVANMSWLLTAGTREGRARKPILKVNNIYGMFRAVESGLGI 263

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LPDY   +   LV+I+ +   P   ++F Y E L+++ ++  FR+F+  + 
Sbjct: 264 AALPDYFSSEASTLVKILPEEHGPEMQIFFVYAEELRHSKRVAVFRDFLIKEL 316


>gi|320158268|ref|YP_004190646.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
 gi|319933580|gb|ADV88443.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
          Length = 307

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 144/297 (48%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  L +F  V   GSF+ AA+QLHL++S++S++I+ LE ++G +L  R  R L+LT
Sbjct: 1   MHSQFSDLPIFVSVVECGSFSSAAKQLHLTKSAVSKRINHLEDKLGSRLLNRTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   ++  +        + E   +P G+L+I   +  G   +   + EFL  YP
Sbjct: 61  EAGERYYEYAAQALNLARQGVDAVTELQGEPRGRLKITAPMTFGVLHVAPLISEFLSRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L L+++ +D+     D  IR+   +  S+LI ++L        A+P Y+     P
Sbjct: 121 KVEVDLQLEDQMVDLVAGRFDLGIRIGH-LPDSNLIAKRLAPCRTVLCASPDYVSRMGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +     +   ++ +L   +     P+     VN+  +I +  + G G
Sbjct: 180 SKPDDLAQHNCLRYSYF--RGGNEWLFLNQGNEYKVLPK-GNFIVNNSEAIRRALLAGIG 236

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA +P +I+        LV +M +   P   +Y  +PE      K++ F +F+  K 
Sbjct: 237 IAQMPTFIIGKELRDRKLVTLMPEYQLPQHFLYAVFPERKHMPLKVRMFIDFLNEKL 293


>gi|113971935|ref|YP_735728.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113886619|gb|ABI40671.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 296

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 145/298 (48%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L +F  V   GSF+ A ++L LS+S+IS++I+ LE  +GI+L  R  R L+LT+
Sbjct: 1   MDHFSALPIFVTVVECGSFSAAGQKLGLSKSAISKRITQLEQHLGIQLLQRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++            +     + E    P G LRI+  +  G+  +   + EFL  YPD
Sbjct: 61  AGARYFEYIRPAVQLTQEGLDAISELQQTPKGNLRISVPMVFGRLYIAPLIAEFLKRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P+
Sbjct: 121 IQLQMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLITRKIAPCLSVICASPAYLAQHGSPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +HN + +          F     + R   +      QVN+  +I + C+ G GI
Sbjct: 180 VPRELTQHNCLFYSYFQDGVEWSFQSPNGMQRIQPK---GNYQVNNSDAIHRACLDGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP +IV+ +     L  I+ + + P   +Y  YP+      K+K   +F+  K  +
Sbjct: 237 ANLPLFIVESDLQAGRLQTILTNFLLPEHGIYAVYPQRKYLPTKVKVLIDFLRDKLAN 294


>gi|27367995|ref|NP_763522.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27359568|gb|AAO08512.1|AE016813_264 Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 307

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 144/297 (48%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  L +F  V   GSF+ AA+QLHL++S++S++I+ LE ++G +L  R  R L+LT
Sbjct: 1   MHSQFSDLPIFVSVVECGSFSSAAKQLHLTKSAVSKRINHLEDKLGSRLLNRTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   ++  +        + E   +P G+L+I   +  G   +   + EFL  YP
Sbjct: 61  EAGERYYEYAAQALNLARQGVDAVTELQGEPRGRLKITAPMTFGVLHVAPLISEFLSRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L L+++ +D+     D  IR+   +  S+LI ++L        A+P Y+     P
Sbjct: 121 KVEVDLQLEDQMVDLVAGRFDLGIRIGH-LPDSNLIAKRLAPCRTVLCASPDYVSRMGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +     +   ++ +L   +     P+     VN+  +I +  + G G
Sbjct: 180 SKPADLAQHNCLRYSYF--RGGNEWLFLNQGNEYKVLPK-GNFIVNNSEAIRRALLAGIG 236

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA +P +I+        LV +M +   P   +Y  +PE      K++ F +F+  K 
Sbjct: 237 IAQMPTFIIGKELRDRKLVTLMPEYQLPQHFLYAVFPERKHMPLKVRMFIDFLNEKL 293


>gi|163794423|ref|ZP_02188394.1| Transcriptional regulator [alpha proteobacterium BAL199]
 gi|159180147|gb|EDP64670.1| Transcriptional regulator [alpha proteobacterium BAL199]
          Length = 296

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 130/297 (43%), Positives = 182/297 (61%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGDTLNLSQSAVSRQISHLEESLRVSLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +   +V+ KL TT+  L E   +P G LR+ TT+ LG N L   +  FL LYP+I
Sbjct: 61  GEILFQTARDVFAKLATTEAILAEGKDRPKGPLRLTTTVALGSNWLAPRVGAFLELYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + LIL++ ++D+SM  AD A+RL  P Q   LIQR L TI  H YAAP YLK    P +
Sbjct: 121 SLTLILNDSELDLSMRQADVALRLTPPRQ-PDLIQRHLKTIKFHLYAAPSYLKAAGVPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H LI +G+       + NWL  V         S L+VN+Y ++ +    G GIA
Sbjct: 180 PADLAAHRLIIYGETAHPPFPNVNWLLDVASGPRGRPGSVLRVNNYFAMYRAVQTGIGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LPDY+ +++ NL+R++ D+  P    YF YPE L+++ ++   R+F+  +    +F
Sbjct: 240 ALPDYMAREDVNLIRVVPDLEGPQVPAYFVYPEELRHSKRITVLRDFLIQEVAKSQF 296


>gi|323493398|ref|ZP_08098520.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323312221|gb|EGA65363.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 305

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 147/293 (50%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + VF  V  SGSF+ AA++L++++S++S++I+ LE E+GI+L  R  R L+LTE G 
Sbjct: 4   FSSIPVFVSVVESGSFSAAADKLNITKSAVSKRITHLEEELGIRLINRTTRKLSLTEAGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +   ++  +  +     + E   +P GKLR+   +  G   +   + EFL LYPD++I
Sbjct: 64  RYYEYVAQSLNLAQQGIDAVSELQGQPRGKLRVTAPMSFGVLHVAPLIAEFLELYPDVEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D+  +  D  IR+   +  S+L+ ++L        A+P Y++    P    
Sbjct: 124 DLQLEDQMVDLVQESFDIGIRIGH-LPVSNLVAKRLAPCLSVLCASPGYVERYGVPQQPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +           N   +            L VN+  +I +  + G+GI  L
Sbjct: 183 DLSQHSCLQYSYYRGGTEWSLN---SAGNEYRVVPKGPLSVNNSEAIRRAVLEGAGIGNL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV  +     L  ++ D   P+  +Y  +P+      K++AF +FI  + 
Sbjct: 240 PTFIVAKDIQAGRLQVLLNDYHLPNHAIYAVFPQRKHMPLKVRAFLDFIHERL 292


>gi|24371967|ref|NP_716009.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24345816|gb|AAN53454.1|AE015485_3 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 295

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 89/296 (30%), Positives = 142/296 (47%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A ++L LS+S+IS++IS LE  +GI+L  R  R L+LT+ G+
Sbjct: 4   FSALPIFVTVVECGSFSLAGQKLGLSKSAISKRISQLEQHLGIQLLQRTTRSLSLTDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +            +     + E    P G LRI+  +  G+  +   + EFL  YPDIQ+
Sbjct: 64  RYFEYIRPAVQLTQEGLDAISELQQTPRGNLRISVPMVFGRLYIAPLIAEFLKRYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P++  
Sbjct: 124 QMQMDDKITDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPAYLTQHGLPMTPC 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN + +          F+   + D           QVN+  +I Q C+ G GIA L
Sbjct: 183 ELTQHNCLFYSYFQDGVEWSFH---SPDGMQRVQPKGNYQVNNSDAINQACLDGLGIANL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P +IV+ +    +L  ++ D   P   +Y  YP+      K+     F+  K   +
Sbjct: 240 PRFIVEPDLQTGHLQALLTDYPLPEHGIYAVYPQRKYQPTKVTVLIEFLMAKLGQY 295


>gi|71083931|ref|YP_266651.1| transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062]
 gi|71063044|gb|AAZ22047.1| probable transcriptional regulator [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 296

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 118/296 (39%), Positives = 185/296 (62%), Gaps = 1/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL++F+ VA +GSFT+A   L+LSQS+ISRQI  LE ++ ++LF RHARGLTLTE 
Sbjct: 1   MDWDKLKIFHAVAEAGSFTNATINLNLSQSAISRQIQSLEQDLKVQLFERHARGLTLTEN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +   +V  KL+  +  L +   KP+GKL I T    G + L   ++EF+ L P+I
Sbjct: 61  GEYLFKTAHDVISKLKEVESTLGDQKNKPTGKLTITTVRSFGTHWLTPRIQEFMTLNPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+LI +++++D+S   AD  I +R+P Q  + IQ+KLV +  + Y +  YL+    P +
Sbjct: 121 EIELIFEDRELDLSTRQADIGIFMRRPKQ-LNYIQKKLVDLKYYIYGSNKYLEKHGMPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +L+KH  I+FG   P  + D +W   +    G+ R   ++VNS + ++     G G+A
Sbjct: 180 ISDLNKHKFISFGKGAPSPVYDPDWALKLGIKDGKKRKPVMKVNSVMGLLLAVEAGVGLA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            LP+Y+V ++ N+++++     P    +F YP++LKNT ++ AFRNF+F K  DWK
Sbjct: 240 ALPEYLVSNSNNIIKVLPSSEGPITEAHFVYPQSLKNTARITAFRNFLFSKIGDWK 295


>gi|37676126|ref|NP_936522.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37200667|dbj|BAC96492.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 307

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 144/297 (48%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  L +F  V   GSF+ AA+QLHL++S++S++I+ LE ++G +L  R  R L+LT
Sbjct: 1   MHSQFSDLPIFVSVVECGSFSSAAKQLHLTKSAVSKRINHLEDKLGSRLLNRTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +   ++  +        + E   +P G+L+I   +  G   +   + EFL  YP
Sbjct: 61  EAGERYYEYAAQALNLARQGVDAVTELQGEPRGRLKITAPMTFGVLHVAPLISEFLSRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L L+++ +D+     D  IR+   +  S+LI ++L        A+P Y+     P
Sbjct: 121 KVEVDLQLEDQMVDLVAGRFDLGIRIGH-LPDSNLIAKRLAPCRTVLCASPDYVSRMGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +     +   ++ +L   +     P+     VN+  +I +  + G G
Sbjct: 180 SKPADLAQHNCLRYSYF--RGGNEWLFLNQGNEYKVLPK-GNFIVNNSEAIRRALLAGIG 236

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA +P +I+        LV +M +   P   +Y  +PE      K++ F +F+  K 
Sbjct: 237 IAQMPTFIIGKELRDRKLVNLMPEYQLPQHFLYAVFPERKHMPLKVRMFIDFLNEKL 293


>gi|319403842|emb|CBI77428.1| transcriptional regulator, LysR family [Bartonella rochalimae ATCC
           BAA-1498]
 gi|319406853|emb|CBI80488.1| transcriptional regulator, LysR family [Bartonella sp. 1-1C]
          Length = 301

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 152/300 (50%), Positives = 211/300 (70%), Gaps = 2/300 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  DW+KLRVF+  A +GSFTHAA++LHLSQS+ISRQ+S LE +V + LF RHARGL LT
Sbjct: 3   LPLDWNKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSALEQDVRVPLFQRHARGLILT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   ++  KLE T+++L ES  KP+G LR+ +T  +G   L  ++ EFL LYP
Sbjct: 63  EQGEILYRTAHDILMKLENTRLQLSESREKPTGHLRVTSTFGMGTGWLAEHIPEFLNLYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QIQL+LD++++D++M YADCAIRLR+P Q   LIQRKL T+HMH YA+ +Y+ N  +P
Sbjct: 123 DMQIQLLLDDEELDLTMRYADCAIRLRQP-QQPDLIQRKLFTVHMHVYASENYIANYGKP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + ELD+H +I+FG+ +P  +   NWL    +     R+S LQ+N+ +SI    +   G
Sbjct: 182 EKLSELDEHRIISFGEPVPPYLVGLNWLQRAGKSDDSVRVSILQINNIVSIKNALMRDLG 241

Query: 241 IALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           IA+LPDYIV ++  L+R+  D +  PSF  +FCY  ALKN+ KL  FR++IFLKAR W F
Sbjct: 242 IAVLPDYIVNNDEKLIRLFPDMIDIPSFDTFFCYSAALKNSAKLNVFRDYIFLKARKWSF 301


>gi|120600546|ref|YP_965120.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120560639|gb|ABM26566.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
          Length = 298

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/291 (29%), Positives = 137/291 (47%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A ++L LS+S++S++I+ LE  +G++L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSAAGQKLGLSKSAVSKRITLLEQSLGLQLLHRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +          +     + E    P G LRI+  +  G+  +   + EFL  YPDIQ+
Sbjct: 64  RYYNYVCPAVQLAQEGLDAISELQQAPQGHLRISVPMVFGRVYIAPLIAEFLRRYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RKL        AA  YL     P +  
Sbjct: 124 QMHMDDKTTDLITGGFDLAIRIGE-LPDSSLIARKLAPCLSVICAAKDYLAQHGLPSTPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +HN + +          F     V R          QVN+  +I Q C+ G GIA L
Sbjct: 183 ALTQHNCLFYSYFQDGVEWSFQSPNGVQR---VQPKGNYQVNNSDAIHQACLDGLGIANL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P +IV+ +     L  ++ D   P   +Y  YP+      K+     F+  
Sbjct: 240 PRFIVEPDLQTGRLQALLTDYPLPEHGIYAVYPQRKYLPTKVSVLIAFLME 290


>gi|269961320|ref|ZP_06175685.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833871|gb|EEZ87965.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 302

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 146/290 (50%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGRRYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP I++ L 
Sbjct: 67  EYASQAVNLAQQGVDAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPKIEVDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D+     D  IR+ + + +S+L+ ++L        A+P YL+    P    +L 
Sbjct: 127 LEDAMVDLVEQGFDLGIRIGE-LATSNLVAKRLAPCKSVLCASPEYLEEFGVPTKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +     +   ++ ++ + +     P+     VN+  +I Q  + GSGIA LP +
Sbjct: 186 THNCLRYSYF--RGGVEWMFINSGNEYKVLPK-GNFVVNNSEAIRQLLLRGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   +    NL  +ME+   P   +Y  +PE      K++ F +FI  K 
Sbjct: 243 IAAKDFAAGNLKPLMEEFSLPEHAIYAVFPERKHMPLKVRVFIDFISEKL 292


>gi|146294704|ref|YP_001185128.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145566394|gb|ABP77329.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 298

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 88/293 (30%), Positives = 138/293 (47%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A ++L LS+S++S++I+ LE  +G++L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSDAGQKLGLSKSAVSKRITLLEQSLGLQLLHRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +          +     + E    P G LRI+  +  G+  +   + EFL  YPDIQ+
Sbjct: 64  RYYNYVCPAVQLAQEGLDAISELQQAPQGHLRISVPMVFGRVYIAPLIAEFLRRYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RKL        AA  YL     P +  
Sbjct: 124 QMHMDDKTTDLITGGFDLAIRIGE-LPDSSLIARKLAPCLSVICAAKDYLAQHGLPSTPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +HN + +          F     V R          QVN+  +I Q C+ G GIA L
Sbjct: 183 ALTQHNCLFYSYFQDGVEWSFQSPNGVQR---VQPKGNYQVNNSDAIHQACLDGLGIANL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV+ +     L  ++ D   P   +Y  YP+      K+     F+  K 
Sbjct: 240 PRFIVEPDLQTGRLQALLTDYPLPEHGIYAVYPQRKYLPTKVSVLIAFLMEKL 292


>gi|153831529|ref|ZP_01984196.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148872039|gb|EDL70856.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 302

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 146/290 (50%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGRRYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP I++ L 
Sbjct: 67  EYASQAVNLAQQGVDAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPKIEVDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D+     D  IR+ + + +S+L+ ++L        A+P YL+    P    +L 
Sbjct: 127 LEDAMVDLVEQGFDLGIRIGE-LATSNLVAKRLAPCKSVLCASPAYLEEFGVPTKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +     +   ++ ++ + +     P+     VN+  +I Q  + GSGIA LP +
Sbjct: 186 THNCLRYSYF--RGGVEWMFINSGNEYKVLPK-GNFVVNNSEAIRQLLLRGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   +    NL  +ME+   P   +Y  +PE      K++ F +FI  K 
Sbjct: 243 IAAKDFAAGNLKPLMEEFSLPEHAIYAVFPERKHMPLKVRVFIDFISEKL 292


>gi|312884169|ref|ZP_07743881.1| putative transcription regulator protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368217|gb|EFP95757.1| putative transcription regulator protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 311

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 147/292 (50%), Gaps = 7/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  V   GSF+ AA +L +++S++S++I+ LE E+G +L  R  R L+LTE G 
Sbjct: 4   FNTIPIFVAVVECGSFSAAAYKLCITKSAVSKRINLLEEELGTRLLNRTTRKLSLTEAGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + H    +     +     + E   +P G L++   +  G   +   + EFL LYPD+ I
Sbjct: 64  RYHEYVIQSLSLAKQGIDAVAELQGQPRGTLKVTVPMSFGIAHITPFISEFLALYPDVDI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D+  +  D  IR+   +  S+LI R+L + +    A+ +YLK     LS +
Sbjct: 124 NLSLEDRMLDLVQEGFDIGIRIGD-LPDSNLIARRLTSCNSVLCASDNYLKKNPPILSPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ I +      C  D+       R    P+   L +N+  +I Q  + G+GIA L
Sbjct: 183 DLKHHDCIQYSYYQGGC--DWVLAKESKRFRILPK-GRLSINNSQAIRQATINGAGIANL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P +IV D+     L  I+ D   P   VY  +P+      K++ F NF+  K
Sbjct: 240 PTFIVADDLKSGRLQVILSDYQLPQHGVYAVFPDKKHMPVKVRKFLNFMIDK 291


>gi|91763001|ref|ZP_01264965.1| probable transcriptional regulator [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717414|gb|EAS84065.1| probable transcriptional regulator [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 296

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 119/296 (40%), Positives = 185/296 (62%), Gaps = 1/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL++F+ VA +GSFT+A   L+LSQS+ISRQI  LE ++ ++LF RHARGLTLTE 
Sbjct: 1   MDWDKLKIFHAVAEAGSFTNATINLNLSQSAISRQIQSLEQDLKVQLFERHARGLTLTEN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +   +V  KL+  +  L +   KP+GKL I T    G + L   ++EF+ L P+I
Sbjct: 61  GEYLFKTAHDVISKLKEVESTLGDQKNKPTGKLTITTVRSFGTHWLTPRIQEFMTLNPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+LI ++K++D+S   AD  I +R+P Q  + IQ+KLV +  + Y +  YL+    P +
Sbjct: 121 EIELIFEDKELDLSTRQADIGIFMRRPKQ-LNYIQKKLVDLKYYIYGSNKYLEKHGMPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +L+KH  I+FG   P  + D +W   +    G+ R   ++VNS + ++     G G+A
Sbjct: 180 ISDLNKHKFISFGKGAPSPVYDPDWALKLGIKDGKKRKPVMKVNSVMGLLLAVEAGVGLA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            LP+Y+V ++ N+++++     P    +F YP++LKNT ++ AFRNF+F K  DWK
Sbjct: 240 ALPEYLVSNSNNIIKVLPSSEGPITEAHFVYPQSLKNTARITAFRNFLFSKIGDWK 295


>gi|156977891|ref|YP_001448797.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156529485|gb|ABU74570.1| hypothetical protein VIBHAR_06683 [Vibrio harveyi ATCC BAA-1116]
          Length = 302

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 82/290 (28%), Positives = 146/290 (50%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   GSF+ AA+QL+L++S+IS++I+ LE ++GI+L  R  R L+LTE G +  
Sbjct: 7   LPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGRRYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+  +  +     + E    P G+L+I   +  G   +   + EFL  YP +++ L 
Sbjct: 67  EYASQAVNLTQQGVDAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPKVEVDLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D+     D  +R+ + + +S+L+ ++L        A+P YL+    P    +L 
Sbjct: 127 LEDAMVDLVEQGFDLGVRIGE-LATSNLVAKRLAPCKSVLCASPEYLEEFGIPTKPSDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +     +   ++ ++ + +     P+     VN+  +I Q  + GSGIA LP +
Sbjct: 186 THNCLRYSYF--RGGVEWMFINSGNEYKVLPK-GNFVVNNSEAIRQLLLSGSGIAQLPTF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   +    NL  +ME+   P   +Y  +PE      K++ F +FI  K 
Sbjct: 243 IAGKDFAAGNLKPLMEEFALPEHAIYAVFPERKHMPLKVRVFIDFISEKL 292


>gi|319427941|gb|ADV56015.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 294

 Score =  291 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 89/291 (30%), Positives = 138/291 (47%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V  SGSF+ A ++L LS+S++S++I+ LE  +GI+L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVESGSFSAAGQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +          +     + E    P G LRI+  +  G+  +   + EFL  YPDIQ+
Sbjct: 64  RYYNYVCPAVQLAQEGLDAISELQQAPQGHLRISVPMVFGRVYIAPLIAEFLRRYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RKL        AA  YL     P +  
Sbjct: 124 QMHMDDKTTDLITGGFDLAIRIGE-LPDSSLIARKLAPCLSVICAAKDYLAQHGLPSTPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +HN + +          F     V R          QVN+  +I Q C+ G GIA L
Sbjct: 183 ALTQHNCLFYSYFQDGVEWSFQSPNGVQR---VQPKGNYQVNNSDAIHQACLDGLGIANL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P +IV+ +     L  ++ D   P   +Y  YP+      K+     F+  
Sbjct: 240 PRFIVEPDLQTGRLQALLTDYPLPEHGIYAVYPQRKYLPTKVSVLIAFLME 290


>gi|167622897|ref|YP_001673191.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352919|gb|ABZ75532.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 302

 Score =  291 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 148/298 (49%), Gaps = 5/298 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V +SGSF+ AA + + +Q++IS++++ LE+++G KL  R +R  ++TE
Sbjct: 1   MDQLGAMRAFIRVVQSGSFSAAAREQNTTQATISKKVAALESQLGAKLLTRSSRENSMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  +L+  + +++     P G LR+A  I  G   +   L  FL  YP+
Sbjct: 61  VGAVYYESCVAIIGELDEAEAQVRSQQASPKGVLRVAAPIVFGCQFIAPFLSHFLECYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L+L +K +D+  +  D AIR  K ++ SSLI R L    M   A+P YLK   EP 
Sbjct: 121 IKVDLMLSDKHVDLIAEGVDVAIR-AKQLEDSSLIARHLFDNPMVVVASPDYLKRFGEPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             QEL  HN I +  L    +  F      D  I  P     + ++  +I+Q  + G G+
Sbjct: 180 EPQELRSHNCIVYSMLKSVNIWHFEQAKESDDKISVPVSGNCRCDNGEAILQLALDGLGV 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP ++V ++     L  ++ + I         YP++     K + F +++  +  +
Sbjct: 240 VQLPIWMVDEHVKVGRLKVLLSNYIAKPLPFNAIYPQSRYVPLKARCFIDYLKQRLAE 297


>gi|330813815|ref|YP_004358054.1| transcriptional regulator, LysR family [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486910|gb|AEA81315.1| transcriptional regulator, LysR family [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 294

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 117/297 (39%), Positives = 189/297 (63%), Gaps = 3/297 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL++F+ V ++ SFT AAE LHLSQS+ISRQI  LE E+   LF RHARGL+LT+ 
Sbjct: 1   MDWDKLKIFHAVTQATSFTKAAEVLHLSQSAISRQIQSLEHELKCTLFERHARGLSLTDN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++  +EV  K++  + +L +   KPSGK+ + T +  G   L   ++EF+   PDI
Sbjct: 61  GELLYKTANEVISKIKDVESDLMDEKHKPSGKIVVTTVVGFGGIWLTPRIQEFMEKNPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++LI+ ++++D+S+  AD AI +R+P Q  + IQ+K++ I+ H Y++  YL+    P +
Sbjct: 121 EVELIVTDQELDLSIREADVAIWMRQPKQ-LNYIQKKIININYHIYSSSKYLEKHGVPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +ELDKH LIT+G   P  +    W+  V       R + ++VN+  S++     G G+A
Sbjct: 180 GKELDKHKLITYGRGTPSPLSQKEWILKVG--TKSKRKAVMKVNNIYSLLLAVESGVGLA 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LP+Y+    P LV+++ ++  P++  +F YP++LKN  ++KAFR+FIF K +  +F
Sbjct: 238 ALPNYMAVGKPGLVKVLPEITGPTYEAHFVYPQSLKNVARVKAFRDFIFSKIKQSEF 294


>gi|23014768|ref|ZP_00054568.1| COG0583: Transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 297

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 118/296 (39%), Positives = 178/296 (60%), Gaps = 3/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGEVLNLSQSAVSRQISALEESLNLPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   +V+ KL  T+  L ES  +  G L+I TT+  G   L   +K+FL  YP+I
Sbjct: 61  GELLYKTARDVFSKLAMTEALLTESRERAQGPLKITTTVAFGSLWLTPRIKDFLDAYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L + ++D++M  AD AIR+  P Q   LIQR L++++   +A+P Y++    P S
Sbjct: 121 SVTMVLFDGELDLAMREADVAIRMMPPRQ-PDLIQRHLLSMNYAVFASPAYIEKYGMPKS 179

Query: 183 IQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +LD H +I +GD   +   + + NWL         PR   L+VN+   I +    G G
Sbjct: 180 ADDLDNHRIIVYGDDTRVSAPVSNVNWLLEAGASPDRPRKPVLEVNNIYGIYRAVKSGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA +P+Y+  +   LV I+ ++  P    YF YPE L+++ ++  FR+F+  K  +
Sbjct: 240 IAAMPEYLRGEAEALVHILPELKGPKVEAYFVYPEELRHSKRITVFRDFLLSKIAE 295


>gi|254455811|ref|ZP_05069240.1| transcriptional Regulator, LysR family [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082813|gb|EDZ60239.1| transcriptional Regulator, LysR family [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 295

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 120/296 (40%), Positives = 186/296 (62%), Gaps = 1/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL++F+ VA +GSFT+A   L+LSQS+ISRQI  LE ++ ++LF RHARGLTLTE 
Sbjct: 1   MDWDKLKIFHAVAEAGSFTNATINLNLSQSAISRQIQSLEQDLKVQLFERHARGLTLTEN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  + +   EV  KL+  +  L +   KP+GKL I T    G + L   ++EF+ L P+I
Sbjct: 61  GEYVFKTAHEVISKLKEVETSLGDQKNKPTGKLTITTVRSFGTHWLTPRIQEFMRLNPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L+ D+K++D+S   AD  I +R+P Q  + IQ+KLV I    Y +  YL+    P +
Sbjct: 121 EIELVFDDKELDLSTRQADIGIFMRRPKQ-LNYIQKKLVDIKYFIYGSNKYLEKFGMPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +L+KH  I+FG   P  + + +W   +    G+ R S ++VNS + ++     G G+A
Sbjct: 180 IGDLNKHKFISFGKGAPSPVYNPDWALKLGMHDGKKRKSIMKVNSVMGLLLAVESGVGLA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            LP+Y+V ++ N+++++     P    +F YP++LKNT +++AFRNF+F K  DWK
Sbjct: 240 ALPEYLVSNSNNVIKVLPKSEGPITEAHFVYPQSLKNTARVQAFRNFLFSKIGDWK 295


>gi|288962020|ref|YP_003452330.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914300|dbj|BAI75786.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 319

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 144/297 (48%), Gaps = 10/297 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D  D +  F  V  + SFT AA++L+LS+S +SR+I  LE  +G +L  R  R L+LT
Sbjct: 5   AMDRLDDMLAFIKVVDTKSFTAAADRLNLSKSVVSRRIGELENRLGARLLNRTTRKLSLT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +   + +   LE  +  + +    P G+LR+   +  G   L   + EFL  YP
Sbjct: 65  EVGQAYYERCTRILADLEEAEQAVADLHAAPRGRLRLNAPVSFGILHLAPAVAEFLERYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I + L+++ +D+  +  D A+R+ + ++ SSLI R+L    M   A+P YL+    P
Sbjct: 125 AIEIDMDLNDRTVDLVDEGYDLAVRIGR-LRDSSLIARRLAPARMALCASPAYLQKHGVP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            +  +L  HN + + ++    +    W   VD      R+S  ++ N+   + +    G 
Sbjct: 184 ETPDDLADHNCLIYTNVPNPDL----WQFIVDGESRGIRVSGPIRSNNGDLLREAAAAGV 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G  + P ++         LV ++   I    +V   YP+    + K++ F +F+  +
Sbjct: 240 GFIMSPTFLCGQALARGELVSVLHSHIPTEVSVNAVYPQNRHLSPKVRVFVDFLVQR 296


>gi|209545318|ref|YP_002277547.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532995|gb|ACI52932.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 294

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 122/291 (41%), Positives = 174/291 (59%), Gaps = 2/291 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   EV+ KL  TQ  L ES  K +G+LR+ TT   G   L   L  F+   PDI
Sbjct: 61  GETLNQTVREVFSKLAMTQSLLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFMDANPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I LIL++ D+D+ M  AD A+R+  P Q   L+QR L    +  YA+P YL+    P +
Sbjct: 121 SITLILEDNDLDLGMREADVAVRMHPPRQ-PDLVQRHLADFPLPIYASPGYLEEFGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H L+ FG   P  +   NWLA    P  E R + ++VNS  ++ +    G GI 
Sbjct: 180 LDDLSSHKLVLFGGYHPP-VPHINWLAEAGVPADEKRPARIEVNSLPAMAEAIASGVGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P Y    +P+LV+I+ +V  P+   YF YPE L+ + ++  FR+F+  +
Sbjct: 239 SIPAYAAVLHPHLVKILPEVTVPTVDAYFVYPEELRTSKRVAVFRDFLLAE 289


>gi|75676638|ref|YP_319059.1| LysR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74421508|gb|ABA05707.1| transcriptional regulator, LysR family [Nitrobacter winogradskyi
           Nb-255]
          Length = 297

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 127/296 (42%), Positives = 180/296 (60%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+  LE E+ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVGALEQELSVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   +V+ +L+  + +L +S  +PSG L++ TT+ +G N L   L EF  LYPDI
Sbjct: 61  GDLLFRTAHQVFMQLQAARAKLADSRERPSGDLKVTTTLGVGINWLIPRLGEFTSLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L L ++++D+SM  AD AIR  KP Q   LIQRKL  I  HAY +  Y+K    P +
Sbjct: 121 RISLALTDEELDLSMREADIAIRTYKPTQ-PDLIQRKLFAICFHAYCSTEYVKRFGTPRT 179

Query: 183 IQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++EL  H +I   +      +++ NWL    R    P      VN+ + +   C  G GI
Sbjct: 180 LEELSGHRIILLNETQASPHLQNRNWLIEAARNRSGPHEPYFTVNNIVGLFSACQQGLGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+V +N  LV++  +  +     YF YPE LK+  +++ FR+F+  KA+ W
Sbjct: 240 AALPDYLVGENNLLVQLFGESDSIQLDTYFVYPEELKSVARVQVFRDFVVSKAQRW 295


>gi|167042012|gb|ABZ06748.1| putative LysR substrate binding domain protein [uncultured marine
           microorganism HF4000_141F21]
          Length = 296

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 120/297 (40%), Positives = 183/297 (61%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL++F+ VA +G+FT A   L+LSQS+ISRQI  LE E+  +LF RHARGL+LTE 
Sbjct: 1   MDWDKLKIFHAVAEAGNFTKATYILNLSQSAISRQIQSLEQELKTQLFERHARGLSLTEN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +   EV  KL+  +  L +   K SGKL + T + LG   L   ++EF+ L P+I
Sbjct: 61  GEYLFKTAREVISKLKDVESTLMDKKNKLSGKLTVTTVVSLGTTWLTPRIQEFMKLNPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+LI D+K++D+S   AD  I +R+P Q  + +Q+KL+ I+ H Y +  YL+    P +
Sbjct: 121 EIELIFDDKELDLSTRQADIGIWMRRPKQ-LNYVQKKLIDINYHIYGSTKYLEQNGHPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +QEL+KHN I++G   P  + + +W   +     + R   ++VNS   ++     G G+A
Sbjct: 180 LQELNKHNFISYGKGAPSPVFNPDWALKLGVKDNKKRKPVMKVNSIYGLLLAVQSGVGLA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LPDYI    PN+V+++  +  P    YF YP++L+NT ++ AFRNF++ K   W+F
Sbjct: 240 ALPDYITISVPNIVKVLPQIEGPKTEAYFVYPQSLRNTARVIAFRNFLYSKVSKWEF 296


>gi|83309761|ref|YP_420025.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82944602|dbj|BAE49466.1| Transcriptional regulator [Magnetospirillum magneticum AMB-1]
          Length = 297

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 120/296 (40%), Positives = 178/296 (60%), Gaps = 3/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGEVLNLSQSAVSRQISALEESLNLPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V+ KL  T+  L ES  +  G L+I TT+  G   L   +K+FL  YP+I
Sbjct: 61  GELLYRTARDVFSKLAMTEALLTESRERAQGPLKITTTVAFGSLWLTPRIKDFLDAYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L + ++D++M  AD AIR+  P Q   LIQR L++++   +AAP Y++    P S
Sbjct: 121 AVTMVLFDGELDLAMREADVAIRMMPPRQ-PDLIQRHLLSMNYAVFAAPSYIEKYGMPKS 179

Query: 183 IQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +LD H +I +GD   +   + + NWL         PR   L+VN+   I +    G G
Sbjct: 180 ADDLDNHRIIVYGDDTRVSAPVSNVNWLLEAGASPDRPRKPVLEVNNIYGIYRAVKSGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA +P+Y+  +   LV I+ ++  P    YF YPE L+++ ++  FR+F+  K  +
Sbjct: 240 IAAMPEYLRGEAEALVHILPELKGPKVETYFVYPEELRHSKRITVFRDFLLSKIAE 295


>gi|115350177|ref|YP_772016.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115280165|gb|ABI85682.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 296

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 138/298 (46%), Gaps = 8/298 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS  + + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TL
Sbjct: 1   MSMENLNGIAAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G   +     +       +  +  S+  P GKLR++  + +G   L   L EF   Y
Sbjct: 61  TDEGRHFYERCQRILEDFRDAEATVTASAQHPRGKLRVSLPV-IGYRFLLPVLPEFRQRY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+++ L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     
Sbjct: 120 PDVELDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGT 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L+ H+ + +       ++D+   A    P+     + +  N+  ++    + G 
Sbjct: 179 PRAPHDLEAHDCVRYCFPTTGKLQDWALAAADGTPLKL--RTAMTCNNMEALRGAVMAGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  +PD++ +D      LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 237 GIGYMPDFLARDALDTGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 294


>gi|152998913|ref|YP_001364594.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151363531|gb|ABS06531.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 298

 Score =  288 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 139/295 (47%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A+++L LS+S++S++I+ LE  +GI+L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +                  + E    P G LRIA  +  G+  +   + EFL  YP IQ+
Sbjct: 64  RYFDYVRPAVKLAADGLDAISELQQAPQGSLRIAVPMVFGRLYIAPLIPEFLRRYPKIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P + Q
Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLARHSAPQTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +          F    +   P         QVN+  +I Q  + G GIA L
Sbjct: 183 QLSQHNCLFYSYFRDGVEWTF---LSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGIANL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P ++V+ +     L  ++ D   P   +Y  YP+      K+     F+  K  +
Sbjct: 240 PHFMVEADLQTGRLQALLTDHPLPEHGIYAVYPQRKYLPTKVSVLIEFLMEKLAE 294


>gi|304310080|ref|YP_003809678.1| Transcriptional regulator, LysR family [gamma proteobacterium HdN1]
 gi|301795813|emb|CBL44012.1| Transcriptional regulator, LysR family [gamma proteobacterium HdN1]
          Length = 300

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 152/296 (51%), Gaps = 11/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++++ +F  V  +GS+T AA++L L +S++SR+I+ LE  +G++L +R  R +  TE 
Sbjct: 2   IDYNEMAIFAKVVDAGSYTRAADKLDLPKSTVSRKITQLEERLGVRLLHRTTRAIKPTEI 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R  +++  + E  Q  + +   +PSG LRI   I  G + L   +KE+L +YP +
Sbjct: 62  GKTYYRHCAQMLAEAEEAQRSINQMQAEPSGLLRITAPISFGASFLAETIKEYLAMYPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ ++LDNK +D+  D  D A R+  P+  SSL+ R L +I +   A+P Y++    P +
Sbjct: 122 RVDIMLDNKILDLIDDEIDVAFRVG-PMSDSSLVARTLGSIRLILCASPVYVQAHGAPRT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +L  HN +   ++          L   + P+     + L  N      +  + G GI 
Sbjct: 181 ISDLAGHNCVAHNNISWH-------LVGPNGPVDVELDARLFSNDMEMTKRMLLAGYGIG 233

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LLP  +  D      L++++ +   P   VY  Y    +   K+ AF +F+  + +
Sbjct: 234 LLPITLAYDEIQQGQLLQVLPEYHFPDRDVYLVYHSRRQLPTKVAAFIDFVAERCK 289


>gi|157960732|ref|YP_001500766.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845732|gb|ABV86231.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 302

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 147/287 (51%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ F  V ++GSF+ AA +   +Q++IS++++ LE+ +G KL  R +R L+LTE G+  
Sbjct: 6   AMKAFVRVVQTGSFSAAAREQSSTQATISKKVAALESLLGAKLLTRSSRELSLTEVGAVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L+  Q +++     P G LR+A  +  G   +   L EFL+ YP+I++ L
Sbjct: 66  FENCVAIIAELDEAQAQVRSQQASPKGILRVAAPVVFGCQFIAPILGEFLIRYPEIKVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +K +D+  +  D AIR  K ++ SSL+ R L    +   A+P YLK   +P   QEL
Sbjct: 126 MLSDKHVDLVAEGVDLAIR-AKQLEDSSLVARHLFDNPLITVASPEYLKRFTQPKEPQEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN I +  L    +  F         I  P     + ++  +I+Q  + G GIA LP 
Sbjct: 185 RAHNCIVYSMLKSVNIWHFEQAKGGGDKISVPVGGNCRCDNGEAILQLALDGVGIAQLPT 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V  +     L R+M + ++        YP++     K++ F +++
Sbjct: 245 WMVDKHINQGKLQRMMPNYLSHPLPFNAIYPQSRYVPLKVRCFIDYL 291


>gi|171320993|ref|ZP_02909982.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171093739|gb|EDT38881.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 296

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 139/298 (46%), Gaps = 8/298 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS  + + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TL
Sbjct: 1   MSMENLNGIAAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G   +     +       +  +  S+ +P GKLR++  + +G   L   L EF   Y
Sbjct: 61  TDEGRHFYERCQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+++ L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     
Sbjct: 120 PDVELDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGT 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L+ H+ + +       ++D+   A    P+     + +  N+  ++    + G 
Sbjct: 179 PRAPHDLEAHDCVRYCFPTTGKLQDWALAARDGTPLKL--RTAMTCNNMEALRGAVMAGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  +PD++ +D      LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 237 GIGYMPDFLARDALDTGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 294


>gi|330445258|ref|ZP_08308910.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489449|dbj|GAA03407.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 296

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 147/296 (49%), Gaps = 13/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F W+ +  F  VA + SFT A+++L +S + +SRQ+S LE  +  KLFYR  R ++LTE+
Sbjct: 2   FQWEGVTEFVAVAETESFTAASKRLGISTAQVSRQVSALENRLNTKLFYRTTRKVSLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  ++   +V   LE  +  L      P G +++   +  G+  +   + +F+L YP++
Sbjct: 62  GSVYYQHCRQVLDGLEEAERALSNLRGTPQGLIKLTAPVTYGEKYIMPLVNDFMLQYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L N+ +D+     D AIRL + + SSS++ ++L T  M+  A+P YL     P S
Sbjct: 122 EVNIDLTNRQVDLVEGSFDLAIRLGR-LTSSSMMAKRLTTRTMYVCASPAYLAKFGVPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           + EL  HN +             +W           R++  L  NS   +    + G GI
Sbjct: 181 LSELRHHNCLI--------GNLDHWRFQESGKEKSVRVTGNLNCNSGYGLRDAVLKGIGI 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LPDY +    D+  +V I+ +   P   ++  YP     + K++   +F+  + 
Sbjct: 233 AQLPDYYIDKDLDSGEIVPILTNYQEPEEGIWALYPHNRHLSPKVRMLVDFLAEEL 288


>gi|126172616|ref|YP_001048765.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125995821|gb|ABN59896.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 298

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 139/295 (47%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A+++L LS+S++S++I+ LE  +GI+L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +                  + E    P G LRIA  +  G+  +   + EFL  YP IQ+
Sbjct: 64  RYFDYVRPAVKLAADGLDAISELQQAPQGSLRIAVPMVFGRLYIAPLIPEFLRRYPKIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P + Q
Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLARHTVPHTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +          F    +   P         QVN+  +I Q  + G GIA L
Sbjct: 183 QLSQHNCLFYSYFRDGVEWTF---LSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGIANL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P ++V+ +     L  ++ D   P   +Y  YP+      K+     F+  K  +
Sbjct: 240 PHFMVEADLQTGRLQALLTDHPLPEHGIYAVYPQRKYLPTKVSVLIEFLMEKLAE 294


>gi|162148926|ref|YP_001603387.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787503|emb|CAP57099.1| Transcriptional regulator LysR [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 294

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 123/291 (42%), Positives = 174/291 (59%), Gaps = 2/291 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   EV+ KL  TQ  L ES  K +G+LR+ TT   G   L   L  F+   PDI
Sbjct: 61  GETLNQTVREVFSKLAMTQSLLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFVDANPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I LIL++ D+D+ M  AD A+R+  P Q   L+QR L    +  YA+P YL+    P +
Sbjct: 121 SITLILEDNDLDLGMREADVAVRMHPPRQ-PDLVQRHLADFPLPIYASPGYLEEFGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H L+ FG   P  +   NWLA    P  E R + ++VNS  ++ +    G GI 
Sbjct: 180 LDDLSSHKLVLFGGYHPP-VPHINWLAEAGVPADEKRPARIEVNSLPAMAEAIASGVGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P Y    +P+LV+I+ DV  P+   YF YPE L+ + ++  FR+F+  +
Sbjct: 239 SIPAYAAVLHPHLVKILSDVTVPTVDAYFVYPEELRTSKRVAVFRDFLLAE 289


>gi|182677057|ref|YP_001831203.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182632940|gb|ACB93714.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 294

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 126/297 (42%), Positives = 185/297 (62%), Gaps = 3/297 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A+ GSFTHA   L LSQS++SRQ+  LE ++ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAAAKVGSFTHAGSMLGLSQSAVSRQVGALEGDLQVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   +V  KL+  +  L ES  +P+G LRI T + +G   L   L EFL LYPDI
Sbjct: 61  GEVLYRTVQDVMAKLDQARTRLNESRERPNGDLRITTNVAIGTGWLTPRLGEFLDLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ LIL ++++D+ M  AD A+RLR+P+Q   LI+R+L T+H H YA+  Y+K   +P  
Sbjct: 121 RLHLILTDEELDLGMRAADVALRLREPVQ-PDLIRRRLFTVHYHLYASVDYVKYHGQPQR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I++LD H LI++       ++D N    + R    PR+S L V + +++ +    G GI 
Sbjct: 180 IEDLDDHRLISYDAAAASYLDDLNAPLHIGRNAKHPRLSALSVTNIIALQKAVEQGVGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY+      +V+IM D +TP    Y  YPE LK+  +++ FR+F+   A+ W F
Sbjct: 240 VLPDYL--KTSQVVQIMTDAVTPELECYLVYPEELKSVARIQVFRDFLVSSAQRWNF 294


>gi|94500932|ref|ZP_01307457.1| transcriptional regulator, LysR family protein [Oceanobacter sp.
           RED65]
 gi|94426872|gb|EAT11855.1| transcriptional regulator, LysR family protein [Oceanobacter sp.
           RED65]
          Length = 311

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 142/300 (47%), Gaps = 11/300 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FD +++ +F  V  +GSFT AA+ L L +S++SR+I+ LE  +G++L  R  R L+LT+
Sbjct: 3   QFDLNEIAIFVKVVDAGSFTGAAKSLGLPKSTVSRKITQLEERLGVRLLQRTTRTLSLTD 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +   S +   +E   I + E   KP G LRI   +  G  +L   + EFL   P+
Sbjct: 63  TGSAYYNQCSRIIGDVEEANIAVTEMQSKPKGLLRITAPMLFGSRVLSDMVSEFLQKNPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ++++L ++ +D+  +  D A R+   +  SSLI R L  I     A+P Y+K    P 
Sbjct: 123 IQVEMMLTDQQLDLIQEGIDVAFRVGH-LADSSLIARPLGEIKTIVCASPEYIKKHGSPN 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  H+ + +           NW               ++VN  LS+    + G GI
Sbjct: 182 HPSELINHSTLGWSPKG-------NWEFDSPEQFSAEINPRVRVNDILSMRMLAINGVGI 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A LP ++  ++     L  ++ D       ++  Y      + K++ F +FI    R  +
Sbjct: 235 ARLPTFLCAEDINEGRLNPVLCDWSYSGVPIHALYASNRHLSVKVRTFVDFIVDGLRQSQ 294


>gi|167042084|gb|ABZ06819.1| putative LysR substrate binding domain protein [uncultured marine
           microorganism HF4000_141I21]
          Length = 296

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 117/297 (39%), Positives = 181/297 (60%), Gaps = 1/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL++F+ VA +G+FT A   L+LSQS+ISRQI  LE E+  +LF RHARGL+LTE 
Sbjct: 1   MDWDKLKIFHAVAEAGNFTKATYILNLSQSAISRQIQSLEQELKTQLFERHARGLSLTEN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +   EV  KL+  +  L +   K SGKL + T +  G   L   ++EF+ L P+I
Sbjct: 61  GEYLFKTAREVISKLKDVESTLMDKKNKLSGKLTVTTVVSFGTTWLTPRIQEFMKLNPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+LI D+K++D+S   AD  I +R+P Q  + +Q+KL+ I+ H Y +  YL+    P +
Sbjct: 121 EIELIFDDKELDLSTRQADIGIWMRRPKQ-LNYVQKKLIDINYHIYGSTKYLEQIGHPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +QEL+KHN I++G   P  + + +W   +     + R   ++VNS   ++     G G+A
Sbjct: 180 LQELNKHNFISYGKGAPSPVFNPDWALKLGVKDNKKRKPVMKVNSIYGLLLAVQSGVGLA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LPDYI    PN+++++  +  P    YF YP++L+N  ++ AFRNF++ K   W+F
Sbjct: 240 ALPDYITISVPNIIKVLPQIEGPKTEAYFVYPQSLRNMARVIAFRNFLYSKVSKWEF 296


>gi|254473821|ref|ZP_05087216.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211957207|gb|EEA92412.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 306

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 142/298 (47%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF +V     F  AA +L +S+S++S++I+ LE  +G +L  R  R ++LTE
Sbjct: 1   MDQISALPVFVMVVEHQGFAAAARELGVSKSAVSKRITLLEEHLGARLLNRSTRNISLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    +     +  +  + +   KP G+L+I   +  G+  +   + +FL L P+
Sbjct: 61  AGELYYARAVDALEAAKEAESAVAQMQGKPKGRLKINVPMTFGRLHIAPLIPKFLKLNPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I +I+D++ ID+     D AIR  + ++ SSLI RK+        A+P YL+    P 
Sbjct: 121 ISIDMIMDDRTIDLVDGGFDLAIRGGR-LKDSSLIARKITPCFNVLAASPQYLEEHGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLG 238
           + Q+L  HN + +     +         T++ P G+ R+      QVN+  ++    + G
Sbjct: 180 TPQDLQNHNCLHYAYFSDQHEW------TLEDPQGQVRVETSGNYQVNNGDALTTAVLGG 233

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI  L  +   +   +  L +++ +   P+ T+Y  YP       K + F NFI  +
Sbjct: 234 CGIGRLTTFAAGEYLRSGALTQVLPNYTLPTQTMYAVYPNRKYLPTKTRVFINFISEQ 291


>gi|89072266|ref|ZP_01158845.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89051798|gb|EAR57250.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 299

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 147/298 (49%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  V   GSF+ A+ +L +++S++S++IS LET +G KL  R  R L+LTE
Sbjct: 1   MDTFSTIPIFTAVVELGSFSEASRKLGITKSAVSKRISALETHLGAKLIQRTTRKLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +         +   +  +      P G L+++  +  G+  +   L EFL LYPD
Sbjct: 61  AGEQYYSYIHRAKSLVNEGEDAISSLQGSPKGHLKVSVPMVFGELHIAPLLSEFLRLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L +D+K +D+  D  D  +R+   +  S+L+ RKL   H    A+P YL+    P 
Sbjct: 121 IKLNLSMDDKVVDLVKDGLDMTLRIGA-LSDSNLVARKLSPCHSVLCASPEYLEKYGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +HN + +          F   + ++R   E     +QVN+   + Q  +   GI
Sbjct: 180 ALNDLKQHNCLYYSYFRSGIEWTFYGPSGLERIRPE---GNIQVNNSNVLKQLMLDDVGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +P ++V+    N  L+ I+E    P   +Y  YPE      KLK F +++  K  D
Sbjct: 237 CQMPLFLVEHEIANGTLIPILEQYRLPEHGIYAVYPERAFMPAKLKVFLDYLEQKLSD 294


>gi|160873499|ref|YP_001552815.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160859021|gb|ABX47555.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315265728|gb|ADT92581.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 299

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/291 (29%), Positives = 137/291 (47%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A+++L LS+S++S++I+ LE  +GI+L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +            E     + E    P G LRIA  +  G+  +   + EFL  YP IQ+
Sbjct: 64  RYFDYVRPAVKLAEEGLDAISELQQAPQGSLRIAAPMVFGRLHIAPLIPEFLRRYPKIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P + Q
Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLARHAAPQTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +          F    +   P         QVN+  +I Q  + G GIA L
Sbjct: 183 QLSQHNCLFYSYFRDGVEWTF---LSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGIANL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P ++V  +     L  ++ D   P   +Y  YP+      K+     F+  
Sbjct: 240 PRFMVDTDLQAGRLQALLADHPLPEHGIYAVYPQRKHLPTKVNVLIEFLIE 290


>gi|209965231|ref|YP_002298146.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
 gi|209958697|gb|ACI99333.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
          Length = 311

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 146/295 (49%), Gaps = 5/295 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D LR+F  VA + SFT AAE++ LS+S+ SR+I+ LE  +G +LF+R  R ++LT+
Sbjct: 1   MDRLDDLRLFTCVAETRSFTRAAERMGLSKSAASRRIAELEARLGARLFHRTTRSISLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H   S++   LE  +  +      P G L++A  +  G   L   +  F   +P+
Sbjct: 61  VGQGFHERVSQILADLEEAEGLVASQHAAPRGVLKLAAPMSFGLLHLGPAICAFQERFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ + L ++ +D+  +  D A+R+ + ++ SSLI R++      A A+P YL+   EP 
Sbjct: 121 VQVDVDLSDRFVDLVDEGYDLAVRIGR-LKDSSLIARRICPARRVAVASPAYLQRRGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L +H+ + + +        F      +          ++ N+   +    V G GI
Sbjct: 180 TPDALAEHDCLHYSNASVADHWSFRAAPGSEMLRPARPAVTMRANNGDILRTAAVAGRGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+LP +IV D+     L  ++ D       ++  YP     + K++AF +FI  +
Sbjct: 240 AVLPTFIVGDDLAAGRLRAVLLDWTVSPSALHAVYPANRHLSPKVRAFVDFIATR 294


>gi|23016520|ref|ZP_00056275.1| COG0583: Transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 309

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 145/295 (49%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +D +  F  VA +GSF+ AA +L+LS+S ISRQ+S LE ++G++L +R  R L+ T
Sbjct: 1   MNPRFDTIIAFVRVAETGSFSEAARRLNLSKSMISRQVSALEADLGVRLLHRTTRSLSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +   L+   + +      P G+LR++  +  G   L  +L  FL  YP
Sbjct: 61  EAGRAYLERCQRILADLDEANLLVSHLQAVPRGRLRVSAPLSFGIGHLAESLPGFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++++   ++ +D+  +  D A+R+ + +  SSLI R+L  I   A A+P Y+     P
Sbjct: 121 EIELEMGFTDRHVDLVEEGWDLAVRIGR-LADSSLIVRRLAPIRRLAAASPDYVARRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +   EL  H+ +T G  +     ++ +     +PI          ++   +    + G G
Sbjct: 180 VHPSELSGHDCLTHGGRVHS---EWRFTGEDGKPIQVEVKGRFDSDNGDVLRDMAMAGLG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I LLP + + D      LV ++E  +    ++   YP     + K++AF + +  
Sbjct: 237 IVLLPSFFLGDGIRAGRLVPLLEKYVPLDSSLNVVYPHGRHLSPKVRAFVDHLAA 291


>gi|90579813|ref|ZP_01235621.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90438698|gb|EAS63881.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 296

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 13/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA + SFT A+++L +S + +SRQ+S LE  +  KLFYR  R ++LTE+G+
Sbjct: 4   WEGVTEFVAVAETESFTAASKRLGISTAQVSRQVSALENRLNTKLFYRTTRKVSLTEEGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   +V   LE  +  L      P G +++   +  G+  +   + +F+L YP++++
Sbjct: 64  VYYQHCRQVMDGLEEAERALSNLRGTPQGLIKLTAPVTYGEKYIMPLVNDFMLQYPELEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + N+ +D+     D AIRL + + SSS++ ++L +  M+  A+P YL     P S+ 
Sbjct: 124 VIDMTNRQVDLVEGSFDLAIRLGR-LTSSSMMAKRLTSRTMYVCASPDYLAKFGVPHSLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL  HN +             +W           R+S  L  NS   +    + G GIA 
Sbjct: 183 ELRHHNCLI--------GNYDHWRFQESGKEKSVRVSGNLNCNSGYGLRDAVLKGIGIAQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPDY +    D+  +V I+ +   P   ++  YP     + K++   +F+  K 
Sbjct: 235 LPDYYIDKDLDSGAIVPILTNYQEPDEGIWALYPHNRHLSPKIRMLVDFLAEKL 288


>gi|90577393|ref|ZP_01233204.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90440479|gb|EAS65659.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 299

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 87/298 (29%), Positives = 147/298 (49%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  V   GSF+ A+ +L +++S++S++IS LET +G KL  R  R L+LTE
Sbjct: 1   MDTFSTIPIFTAVVELGSFSEASRKLGITKSAVSKRISTLETHLGAKLIQRTTRKLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +         +   +  +      P G L+++  +  G+  +   L EFL LYPD
Sbjct: 61  AGEQYYSYIHRAKSLVNEGEDAISSLQGSPKGHLKVSVPMVFGELHIAPLLSEFLRLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L +D+K +D+  D  D  +R+   +  S+L+ RKL   H    A+P YL+    P 
Sbjct: 121 IKLNLSMDDKVVDLVKDGLDMTLRIGA-LSDSNLVARKLSPCHSVLCASPGYLEKYGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L +HN + +          F     ++R   E     +QVN+   + Q  +   GI
Sbjct: 180 AINDLKQHNCLYYSYFRSGIEWTFYGPNGLERIKPE---GNIQVNNSNVLKQLMLDDIGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +P ++V+   DN  L+ I+E    P   +Y  YPE      KLK F +++  K  D
Sbjct: 237 CQMPLFLVEHEIDNGTLMPILEQYQLPEHGIYAVYPERAFMPAKLKVFLDYLEQKLSD 294


>gi|89073120|ref|ZP_01159659.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89051073|gb|EAR56530.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 296

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 13/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA + SFT A+++L +S + +SRQ+S LE  +  KLFYR  R ++LTE+G 
Sbjct: 4   WEGVTEFVAVAETESFTAASKRLGISTAQVSRQVSALENRLNTKLFYRTTRKVSLTEEGG 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   +V   LE  +  L      P G +++   +  G+  +   + +F+L YP++++
Sbjct: 64  VYYQHCRQVMDGLEEAERALSNLRGTPQGLIKLTAPVTYGEKYIMPLVNDFMLQYPELEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + N+ +D+     D AIRL + + SSS++ ++L +  M+  A+P YL     P S+ 
Sbjct: 124 VIDMTNRQVDLVEGSFDLAIRLGR-LTSSSMMAKRLTSRTMYVCASPDYLARFGVPHSLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL  HN +             +W           R+S  L  NS   +    + G GIA 
Sbjct: 183 ELRHHNCLI--------GNYDHWRFQESGKEKSVRVSGNLNCNSGYGLRDAVLKGIGIAQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPDY +    D+  +V I+ +   P   ++  YP     + K++   +F+  K 
Sbjct: 235 LPDYYIDKDLDSGAIVPILTNYQEPDEGIWALYPHNRHLSPKIRMLVDFLAEKL 288


>gi|237809614|ref|YP_002894054.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237501875|gb|ACQ94468.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 292

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  WD +  F  V  + SFT AA++L +S + ISR ++ LE  +G KL YR  R L LT
Sbjct: 1   MTI-WDGINEFICVVETESFTAAAKRLDVSVAHISRHVNQLEDRLGAKLLYRTTRKLRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++   +V ++L+     + E   KP+GKLRI   +  G+  L   + +FLL YP
Sbjct: 60  EVGEVYYQHARKVLNELQEADRAVMEMEGKPTGKLRITAPVYYGEYFLAPLVNDFLLQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L L N+ ID+  +  D AIRL   + SSSL+ RKL     +  A+P YL     P
Sbjct: 120 QLDLELKLTNETIDLVEEGYDLAIRLG-TLDSSSLMCRKLARRTQYLCASPAYLAAKGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            ++ +L  H  +             +W    +  +   RI S    NS L++    + G 
Sbjct: 179 HTLTDLANHRCLG--------GSIDHWRFLENGKLRNWRIGSAWSCNSGLALKDAALKGL 230

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  LPDY V++      LV ++E+   P   ++  YP     + K+K   +F+  K 
Sbjct: 231 GIVQLPDYYVQEELKQGLLVSLLEEYRLPDDGIWVVYPHNRHLSPKVKLLVDFLVKKL 288


>gi|254246719|ref|ZP_04940040.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124871495|gb|EAY63211.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 294

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 139/294 (47%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G
Sbjct: 3   NLTGIVAFVRTAEALSFVAAGRALGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +       +  +  S+ +P GKLR++  + +G   L   L EF   YPD++
Sbjct: 63  RHFYERCQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + 
Sbjct: 122 LDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+ H+ + +       ++D+   A   +P+     + +  N+  ++    + G GI  
Sbjct: 181 RELEAHDCVRYCFPTTGKLQDWALAADDGKPLTL--RTAMTCNNMEALRGAVLAGLGIGY 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++ +D   +  LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 239 MPDFLARDALEHGTLVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 292


>gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072706|gb|ADJ62105.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 299

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 137/292 (46%), Gaps = 7/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++  F  VA  GSF  AAE L +S++++SR +  LE  +G +L  R  R L+LTE G+
Sbjct: 4   LREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++   LE     L   S KP+G LRI   +  G   L      FL  +P+I +
Sbjct: 64  LYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +DI  +  D AIR+ + +  S+L+ RKL +  +H  A+P YL     P    
Sbjct: 124 DITLSDRIVDIIDEGYDMAIRIAR-LSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPH 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H  I++     K    FN     + P+     S L VN+  S +Q  + G GI   
Sbjct: 183 ELAQHQTISYSYNQSKDEWQFN---GPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQ 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P +++     +  LV I+ D   P   +Y  YP       K++A  +F+   
Sbjct: 240 PTFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEA 291


>gi|308050159|ref|YP_003913725.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632349|gb|ADN76651.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 303

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 140/296 (47%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V +SGSF+ AA +L  SQ+S+S++++ LE E+G+KL  R +R   LT 
Sbjct: 1   MDQLGAMRVFVRVVQSGSFSAAARELLTSQASVSKKVATLEAELGVKLLRRTSRDHALTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +        +L+  +  ++   V+P G LRI       + +L   + EFL  YPD
Sbjct: 61  EGADYYHHCVNWLAELDEVEGRIRAQGVQPKGNLRITAPYPFARQILAPVMTEFLERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+  ++ ++  D+  +  D AIR    ++ SSLI R L    M   A+P YL     P 
Sbjct: 121 IQLDFLVSDRRSDLQAEGIDIAIRAGH-LEDSSLIVRHLFDNPMLLVASPDYLSRQGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L +H  I +  +       F +       I  P     Q +S    ++  + G GI
Sbjct: 180 TPDALSQHQCIVYSPVRAVHSWRFQYQ---GNTIVVPVRGPFQSDSGDMNLEAAIAGMGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP ++V+    +  LV+++      +      YP++     K++ F +F+  K 
Sbjct: 237 TELPVWMVEQALSDGRLVQVLASYQADNVPFNALYPQSRHVPLKVRCFIDFLKEKL 292


>gi|209963967|ref|YP_002296882.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
 gi|209957433|gb|ACI98069.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
          Length = 303

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 133/294 (45%), Positives = 186/294 (63%), Gaps = 1/294 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGETLNLSQSAVSRQISALEESLHVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   EV+ KL  T+  L ES   P G L++ TT+  G   L   ++EFL LYPD+
Sbjct: 61  GELLYRTAREVFAKLSMTEAMLSESKEHPKGPLKVTTTMAFGSTWLTPRVREFLSLYPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L+LD+ ++D+SM  AD AIR+  P Q   LIQR L+T+ +H YA   Y +    P S
Sbjct: 121 QLSLLLDDTELDLSMREADIAIRMSAPRQ-PDLIQRHLMTVRVHIYAHRAYAEKRGLPQS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ELD H++I +       + + NWL  V  P G  R + L+VNS  ++ +    G GIA
Sbjct: 180 LDELDHHDIIAYPGETRAPVSNINWLLHVGDPPGGERQTVLRVNSLYAMYRAVESGLGIA 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LPDY+V  NP++VR++ DV  P    YF Y E L+++ ++  FR+F+  K ++
Sbjct: 240 SLPDYVVDGNPDIVRVLPDVSGPRIDAYFVYAEELRHSKRIAVFRDFLVRKVQE 293


>gi|71282049|ref|YP_270171.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147789|gb|AAZ28262.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 309

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 148/291 (50%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F  V ++GSFT AAEQL+ S+S IS+ I+ LE  +G+KL  R  R LTLTE G
Sbjct: 10  ELSDVAAFVCVVQTGSFTAAAEQLNTSKSVISKYITRLEKRLGVKLLARTTRRLTLTEIG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +  + +    ++  +  +     KP G L+I   +  G   +   L+EF+  YP++Q
Sbjct: 70  RTFYEGSRQGLEAIDNAEEAVSFLQGKPRGTLKINAPLSFGALHIAPALEEFIHRYPEMQ 129

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L  D+K ID+  D  D  +R+   ++  +LI R++   H    AAP+YL     P   
Sbjct: 130 IDLRFDDKKIDMIKDGFDLTVRITHQLE-GNLIARRIAPCHHALVAAPNYLAKRGTPKRP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  HN+IT+     +   ++ + A   +P        +Q+N+ L+I +  + G GI+ 
Sbjct: 189 EDLVAHNVITY--QYQQSPWEWEFTAAKSKPKRVRVNGSVQMNNSLAIREAVLAGVGISR 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +P + V ++     L++++        ++Y  +PE      K +AF +++ 
Sbjct: 247 MPTFAVGEDIKSGRLIQLLPKYSLLEHSIYLVFPERNHMAPKTRAFIDYMV 297


>gi|114327383|ref|YP_744540.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315557|gb|ABI61617.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 294

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 130/294 (44%), Positives = 182/294 (61%), Gaps = 2/294 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGDTLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R   EV+ KL  T+  L ES  KP+G+L++ TT+  G + L   L +FL  YPD+
Sbjct: 61  GESLNRTVREVFAKLAMTEALLTESKEKPAGRLKVTTTVGFGASWLAPRLHQFLAAYPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+LD+ D+D++M  AD AIR+  P Q   L+QR L+TI  H    P Y +    P S
Sbjct: 121 SLSLLLDDADLDLAMREADVAIRMHPPKQ-PDLVQRHLMTIKWHVVGTPAYFEQHGRPQS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++LD H LI FGD     + + NWLA   R  G PR   L VNS  ++      G GI 
Sbjct: 180 VEDLDNHRLILFGD-YHSPVNNINWLAEAGRKSGTPRRPLLDVNSLQAMALAIQSGLGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LPDY+  +   L R++ ++ +P   VYF YPE L+++ ++  FR+F+  K  +
Sbjct: 239 ALPDYMSNEMDGLERVLPEIESPKIDVYFVYPEELRSSKRVSVFRDFLLGKLAE 292


>gi|206558465|ref|YP_002229225.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198034502|emb|CAR50367.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 294

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 136/294 (46%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLTE+G
Sbjct: 3   NLTGIVAFVRAAEALSFVAAGRALGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTEEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +       +  +  S+ +P GKLR++  + +G   L   L EF   YPD++
Sbjct: 63  RHFYERCQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + 
Sbjct: 122 LDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+ H+ + +    P   +  +W    D        + +  N+  ++    + G GI  
Sbjct: 181 RELEAHDCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGY 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++ +D   +  LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 239 MPDFLARDALEHGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 292


>gi|90411129|ref|ZP_01219142.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
 gi|90327975|gb|EAS44296.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
          Length = 305

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 142/305 (46%), Gaps = 12/305 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + VF  V   GSF+ A E+L +++S++S++IS LE ++GI+L  R  R L+LTE
Sbjct: 1   MDVFSAIPVFVAVVECGSFSLAGEKLGVTKSAVSKRISQLEAKLGIQLLQRTTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +               +  +     +P G LR+   +  G+  +   + +FL   P 
Sbjct: 61  AGEQYFDYARNALTIANEGEDAISMLQEQPQGTLRLNVPMVFGRLHIAPMIPKFLQDNPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++++D+K +D+     D AIR+ K +  SSLI +++   H    A+P YLK    P 
Sbjct: 121 IKVEMMMDDKVVDLISGSFDIAIRIGK-LPDSSLIAKRIAPCHSVLCASPDYLKKHGTPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  HN +++          FN     +  I         VN+  ++ +  + G G+
Sbjct: 180 TPLDLAHHNCLSYSYFQAGSEWRFN---GPEGQISVVPKGNYCVNNSDALFEGLLTGLGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR----NFIFLKA 294
             +P +IV    +  NL+ ++ +   P   +Y   PE      K+  F     N+I  K+
Sbjct: 237 CQMPTFIVASAIEQGNLISLIPEYELPKHAIYAMLPERKHIPAKISIFLAYLKNYIDEKS 296

Query: 295 RDWKF 299
             W  
Sbjct: 297 ASWDL 301


>gi|90580491|ref|ZP_01236297.1| transcriptional regulators, LysR family protein [Vibrio angustum
           S14]
 gi|90438400|gb|EAS63585.1| transcriptional regulators, LysR family protein [Vibrio angustum
           S14]
          Length = 299

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 148/295 (50%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V ++GSF+  A + + +Q++IS++I+ LE ++  KL  R +R L LTE
Sbjct: 1   MDQLGAMRAFIRVVQTGSFSATAREQNTTQATISKKIAALEHKLEGKLLTRSSRDLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++ +     +  +L+  +  ++     P G ++IA  I  G   +   + EFL  YPD
Sbjct: 61  VGAEYYERCVAIISELDEAESNVRAHRALPQGLIKIAAPITFGNIFIAPIISEFLARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L +K +DI  +  D AIR R+ ++ SSLI R+L        A+  Y+    EP+
Sbjct: 121 ISVDLTLSDKHVDIISEGVDVAIRARE-LEDSSLIARRLFDNPNILVASSAYIAKYGEPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L++HN I +   +   M ++N+     +          + +S  +I++  + G GI
Sbjct: 180 TPEDLNQHNCIIYS--LSSTMNNWNFYNKKIKK-SVSVSGNFKSDSCDAILRSVLDGVGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ALLP ++V +      L ++M    T     +  Y      + K++ F +F+  K
Sbjct: 237 ALLPVWMVDNEINAGRLKQLMPSYKTQPLPFHAIYTNNRYVSLKIRCFIDFMKEK 291


>gi|294142254|ref|YP_003558232.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328723|dbj|BAJ03454.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 300

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 144/293 (49%), Gaps = 7/293 (2%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+ +  +D + VF  V ++G F+ AAE +  S S IS+++S LE  +G++L  R  R + 
Sbjct: 1   MTMNKLFDGVMVFTQVVKTGGFSAAAELMGHSTSYISKEVSKLEERLGVRLLNRTTRSIG 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT +G   ++   ++    E     L +  V P G LR++T +  G N LQ  L E++ L
Sbjct: 61  LTPEGKAYYQECQQLVADAEQAVNMLTQHEVAPKGTLRLSTPVGFGNNYLQPILAEYMRL 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP++ + L L+++ +D+  +  D AIR    ++ SSLI RK+ +   +  A+P YL    
Sbjct: 121 YPNVSLDLDLNDRKVDVVAEGYDLAIRASLQLEESSLICRKVFSCKGYIVASPGYLSKHG 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P   QEL +HN   + +        FN      +P        L  NS    +   +  
Sbjct: 181 HPHHPQELSRHNCFCYSNHKSPNKWQFN--DKEGKPYTVEVRQKLVCNSAEMELALVLDD 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            GI  LP + ++D   +  LV + E++  P   V+  YP     + K++AF +
Sbjct: 239 LGICRLPMFYMEDKIKSGKLVILFEELPAPEIDVFVVYPSRKHQSPKVRAFID 291


>gi|288957074|ref|YP_003447415.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288909382|dbj|BAI70871.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 296

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 132/298 (44%), Positives = 184/298 (61%), Gaps = 3/298 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQIS LE  +G+ LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGETLNLSQSAVSRQISALEESLGVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  LHR   +V+ KL  T+  L ES   P G LR+ TT+  G   L   + EF+ +YPDI
Sbjct: 61  GELLHRTARDVFAKLSMTEAMLTESREHPKGPLRVTTTVAFGSTWLTPRINEFMSIYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L++D+ ++D++M  AD AIR+  P Q   LIQR L++I  H YA+  YLK    P +
Sbjct: 121 QLTLLIDDDELDLAMREADIAIRMNTPRQ-PDLIQRHLMSIRFHLYASQGYLKKKGTPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ELD H+LIT+   +   + + NW+  +  P    R   LQVNS  +I +    G GI 
Sbjct: 180 LAELDSHDLITYPPDVRAPIPNVNWVMEMGDP-SPNRKPILQVNSVYAIYRAVESGLGIG 238

Query: 243 LLPDYIVKD-NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LPD++V   + ++ RIM DV  P    YF Y E L+++ ++  FR+F+  K  +  F
Sbjct: 239 ALPDFLVDSFSKDVTRIMPDVEGPKVDAYFVYAEELRHSKRIAVFRDFLVKKVAETPF 296


>gi|254250951|ref|ZP_04944269.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124893560|gb|EAY67440.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 294

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 138/294 (46%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G
Sbjct: 3   NLNGIVAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   L   +  +  S+ +P G+LR++  + +G   L   L EF   YPD++
Sbjct: 63  RHFYERCQRILEDLRDAEATVTASAQQPRGRLRVSLPV-IGYRFLLPVLPEFRQRYPDVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D AIR   P+  SSL+ R+L        A P YL     P + 
Sbjct: 122 LDLDFNDRMVDVVEGGFDAAIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPHAP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L+ H+ + +    P   +  +W    D        + +  N+  ++    + G GI  
Sbjct: 181 RDLETHDCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGY 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++ +D      LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 239 MPDFLARDALERGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 292


>gi|311693827|gb|ADP96700.1| transcriptional regulator, LysR family protein [marine bacterium
           HP15]
          Length = 296

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 139/298 (46%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +++ F  V  +GSF  A+E L +S++++SR +S LE+ +G++L  R  R L+LT 
Sbjct: 1   MDRLLEMQTFCNVVEAGSFVAASESLGMSKAAVSRYVSELESRLGVRLLQRTTRRLSLTG 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +    E+   +E  + E+   +    G LR+   +  G + L     EF   YPD
Sbjct: 61  EGEVFYVRCRELLAGVEEAEAEITSRNDVARGTLRVNAPVSFGISHLAPLWGEFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L ++ +DI  +  D AIR+   +QSS+L+ R++ +  + A A+P Y+     P 
Sbjct: 121 VELSIDLSDRLVDIVEEGFDMAIRIA-TLQSSTLVSRRITSTRLIACASPDYIATHGSPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H +I + +        F      +          +  N+  +     + G GI
Sbjct: 180 KPEDLASHRIIGYSNFTTGNDWPFE---GPEGATSVRVRPWMYANNGETCCGAALAGQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            L P ++V  +     LV +M    +    VY  YP     T K++A  +++     D
Sbjct: 237 VLQPGFLVHKDLEAGRLVELMPAYRSTELGVYAVYPTRKFVTPKVRALVDYLVSAFPD 294


>gi|34498937|ref|NP_903152.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34104786|gb|AAQ61143.1| probable transcriptional regulator, LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 315

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + +F  V  +GSF+ AAE+L L++S++S+++  LE  + ++L  R  R L+LTE G 
Sbjct: 4   FAAIPIFVAVVEAGSFSAAAERLGLTKSAVSKRVQQLEAGLNVRLLQRTTRSLSLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +             +        +P G LR+A  +  G+  L     EFL  YPDIQ+
Sbjct: 64  RYYDRARGALALAREAEEVAAGLQGRPQGLLRVAAPMAFGRLHLSPLAAEFLRRYPDIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +D++ +D+     D A+R+   +  + ++ R+L    +   A+P YL     P    
Sbjct: 124 DLAMDDRMVDLVEGGYDLAVRIGN-LPDNRMVARRLAPCRVAVCASPDYLAAHGRPAHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN I +          F      D  I        QVN+  +     + G GI  +
Sbjct: 183 ELARHNCIHYSYYRGGAYWTFQ---GPDGEIRVQPRGNYQVNNSEARRDALLAGLGICEM 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV  +     L  ++ D   P   ++  +P+      K +AF +F+  K 
Sbjct: 240 PTFIVGPDLAAGRLEAVLTDYPLPPHAIHVVFPQRR-LPAKARAFIDFLDEKL 291


>gi|172059197|ref|YP_001806849.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171991714|gb|ACB62633.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 296

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 140/298 (46%), Gaps = 8/298 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS  + + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TL
Sbjct: 1   MSMENLNGIAAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G   +     +       +  +  S+ +P G+LR++  + +G   L   L EF   Y
Sbjct: 61  TDEGRHFYERCQRILEDFRDAEATVTASAQRPRGRLRVSLPV-IGYRFLLPVLPEFRQRY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+++ L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     
Sbjct: 120 PDVELDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGT 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L+ H+ + +       ++D+   +    P+     + +  N+  ++    + G 
Sbjct: 179 PRAPHDLEAHDCVRYCFPTTGKLQDWALASRDGTPLKL--RTAMTCNNMEALRGAVMAGL 236

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  +PD++ +D  +   LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 237 GIGYMPDFLARDALDTVALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 294


>gi|193222375|emb|CAL62460.2| Putative transcriptional regulator LysR family [Herminiimonas
           arsenicoxydans]
          Length = 293

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 139/296 (46%), Gaps = 10/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + ++ F  V  + SFT A  +L +S++ +S+ +  LE  +G +L  R  R L+LT
Sbjct: 1   MDI-LNCMKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +    +S+  P G L++A  +  G   +   L E++  YP
Sbjct: 60  ESGLAYYERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ + L ++ +D+  D  D AIR+   +  S LI RKL T  +   A+P YL+    P
Sbjct: 120 EVRLDIALADRRVDLIEDGYDLAIRVGN-LPESGLIARKLATDRIVLCASPAYLQVHGAP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            + ++L +H  + +            W+    +     R+   ++ N+   +    + G+
Sbjct: 179 QTPEDLKQHACLNYSYSSSGD----EWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGA 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+   P +IV D+     LV +M+D       +Y  YP     + K++ F +++  
Sbjct: 235 GLIWQPHFIVADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYLVA 290


>gi|149908568|ref|ZP_01897230.1| Putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
 gi|149808402|gb|EDM68339.1| Putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
          Length = 294

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS DW  +  F  VA + SFT A ++L +S + +SRQIS LE  +  KLFYR  R +++T
Sbjct: 1   MS-DWSGVSEFVAVAETESFTAAGKRLGISTAQVSRQISALEERLSAKLFYRTTRKVSVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++   +V   L   +  +      P GKL+I   I  G+  +   + +F+  YP
Sbjct: 60  EVGGIYYQHCRQVMDGLADAERAITNLQSTPKGKLKITAPITYGERSVAPLVNDFVTQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++QL+L N+ ID+  +  D AIRL + +  S++I ++L T   +  AAP YL     P
Sbjct: 120 ELEVQLVLSNQQIDLIDEGFDLAIRLGQ-LGDSTMIGKRLATRKQYVCAAPEYLSAFGAP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ ELD+HN ++          D+       +            NS   ++   + G G
Sbjct: 179 HTLSELDRHNCLS-------GTLDYWRFQEKGKARNIRVKGNFSCNSGPVLVDAALKGMG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  LPDY V+++     L+ ++ +   P   V+  YP+    + K++   +++  K 
Sbjct: 232 IVQLPDYYVQEHINQGQLIELLPNYREPDDAVWALYPQNRHLSPKVRMLVDYLAKKL 288


>gi|254702216|ref|ZP_05164044.1| hypothetical protein Bsuib55_15351 [Brucella suis bv. 5 str. 513]
 gi|261752789|ref|ZP_05996498.1| LysR family transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261742542|gb|EEY30468.1| LysR family transcriptional regulator [Brucella suis bv. 5 str.
           513]
          Length = 282

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 144/280 (51%), Positives = 196/280 (70%), Gaps = 2/280 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTE
Sbjct: 4   PLDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD
Sbjct: 64  QGETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  
Sbjct: 124 VQLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLN 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GI
Sbjct: 183 SIDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGI 242

Query: 242 ALLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNT 280
           A+LPDY+      LV+++ ++   PSF  +FCYPEALKN+
Sbjct: 243 AVLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEALKNS 282


>gi|107024466|ref|YP_622793.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116688155|ref|YP_833778.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105894655|gb|ABF77820.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116646244|gb|ABK06885.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 294

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G
Sbjct: 3   NLTGIVAFVRTAEALSFVAAGRALGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +       +  +  S+ +P GKLR++  + +G   L   L EF   YPD++
Sbjct: 63  RHFYERCQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + 
Sbjct: 122 LDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+ H+ + +    P   +  +W    D        + +  N+  ++    + G GI  
Sbjct: 181 RELEAHDCVRY--CFPTTGKLQDWALAADDGTPLTLRTAMTCNNMEALRGAVLAGLGIGY 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++ +D      LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 239 MPDFLARDALEYGTLVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 292


>gi|217971578|ref|YP_002356329.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217496713|gb|ACK44906.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 298

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 137/295 (46%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A+++L LS+S++S++I+ LE  +GI+L  R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLRRTTRSLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +            E     + E    P G LR A  +  G+  +   + EFL  YP IQ+
Sbjct: 64  RYFDYVRPAVKLAEEGLDAISELQQAPQGNLRFAVPMVFGRLYIAPLIPEFLRRYPKIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  D+     D AIR+ + +  SSLI RK+        A+P YL     P + Q
Sbjct: 124 QMQMDDKTTDLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLARHAAPQTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +          F    +   P         QVN+  +I Q  + G GIA L
Sbjct: 183 QLSQHNCLFYSYFRDGVEWTF---LSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGIANL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P ++V  +     L  ++ D   P   +Y  YP+      K+     F+  K  +
Sbjct: 240 PRFMVDTDLQTGRLQALLADHPLPEHGIYTVYPQRKYLPTKVSVLIEFLMEKLAE 294


>gi|300024873|ref|YP_003757484.1| LysR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526694|gb|ADJ25163.1| transcriptional regulator, LysR family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 295

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 121/296 (40%), Positives = 184/296 (62%), Gaps = 1/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+  A +GSFTHA EQLH+SQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAAAEAGSFTHAGEQLHMSQSAVSRQISALEANLKVTLFHRHARGLVLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R  +EV+ KL+T +  L +S+ KPSG LRI   I  G   L   L+EF  LYP+I
Sbjct: 61  GELLNRTVAEVFAKLQTAETLLSDSTSKPSGDLRITAPIGFGTIWLTPRLQEFGDLYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++LIL++  +DI M  AD AI  R+P + + LI+R L    + A+A+  YL+    P +
Sbjct: 121 RVELILNDDQVDIGMRAADVAIWTREP-EQADLIRRSLFESRVRAFASAQYLRKHGTPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ELD+H +I +  +  + ++  +W+    R    PR + L+VNS ++I      G GI 
Sbjct: 180 LAELDQHRIIAYTGIPAQHLDAMSWIEKAGREGAAPREAALRVNSVVAIKYAIQAGIGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           ++PDY+  +  +LV ++ +   PS  + F Y E LK + K++  R+F+  K   ++
Sbjct: 240 MIPDYMSDEQSDLVPVLAEFEQPSLNLIFAYAEELKASKKVQLLRDFLVSKISRFR 295


>gi|256822463|ref|YP_003146426.1| LysR family transcriptional regulator [Kangiella koreensis DSM
           16069]
 gi|256796002|gb|ACV26658.1| transcriptional regulator, LysR family [Kangiella koreensis DSM
           16069]
          Length = 302

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/295 (28%), Positives = 148/295 (50%), Gaps = 13/295 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++ F  V + GSFT AAEQL  S   +S+ +S LE+++ ++L +R  R +T+TE
Sbjct: 1   MDKLDLMQAFISVVQQGSFTSAAEQLGTSTQLVSKYVSQLESDLKVRLLHRTTRSVTVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++   +ET +  ++E   +P G+LRI+  +      L   L E+   YP+
Sbjct: 61  AGQAYLERAQQILSDIETLEGSIKEEGDEPRGRLRISAPMSFSTLHLGKLLAEYQQQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L+++ +DI  +  D AIR+   ++SSSLI RK+  I +   A+P YL    EP 
Sbjct: 121 VTIDLQLNDRKVDIVEEGFDLAIRIGD-LESSSLIARKIAPIQLVMCASPDYLHQHGEPQ 179

Query: 182 SIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           S++EL  H  + +      +P  +   +    ++R  G      +  N+   + +  V G
Sbjct: 180 SLEELKGHRYLHYSYRNEDLPALVSTQSASMVLNRQKG-----SIAANNGEVLAKAAVAG 234

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +GI L P +IV        L  I++        +Y  YP     +GK+++F +++
Sbjct: 235 AGIVLQPTFIVGPYIAQGKLKPILKQHQQEPLGLYAVYPHRKYLSGKVQSFIDYL 289


>gi|83309323|ref|YP_419587.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82944164|dbj|BAE49028.1| Transcriptional regulator [Magnetospirillum magneticum AMB-1]
          Length = 309

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 145/293 (49%), Gaps = 7/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +D +  F  VA +GSF+ AA +L LS+S ISRQ+S LE ++G++L +R  R L+ T
Sbjct: 1   MTPRFDTIIAFVRVAETGSFSEAARRLGLSKSMISRQVSALEADLGVRLLHRTTRSLSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +   L+   + +      P G+LR++  +  G   L   L  FL  YP
Sbjct: 61  EAGRAYLERCQRILADLDEANLLVSHLQAVPRGRLRVSAPLSFGIGHLSACLPGFLERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++++   ++ +D+  +  D A+R+ + +  SSLI R+L  +   A A+P YL+    P
Sbjct: 121 EIELEMGFTDRHVDLVEEGWDLAVRIGR-LADSSLIVRRLAPVRRMAAASPAYLERRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL  H+ +T G    +   ++ +     +P+          ++   +    + G G
Sbjct: 180 RRPEELSAHDCLTHG---GRVQSEWRFTGDDGKPVQVEVRGRFHADNGDVLRDMALAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + LLP + + D+     LV ++E  +    ++   YP     + K++AF + +
Sbjct: 237 VVLLPSFFLGDDIRAGRLVPLLEAYVPLDSSLNAVYPHGRHLSPKVRAFVDHL 289


>gi|59713214|ref|YP_205989.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59481462|gb|AAW87101.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 294

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 152/298 (51%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +GSF+   ++++ SQ++IS++++ LE ++G+KL  R +R  +LT 
Sbjct: 1   MDQLSAMRAFVRVVETGSFSATGKEMNTSQTTISKKVAALENQIGVKLLTRSSRDHSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  ++    +  +L+  + +++  +  P G +RI   +  G+ LL   + EF   YPD
Sbjct: 61  AGSDYYQTCVNILSELDEVEAKVRSKATLPQGSIRITAPVAFGRFLLAPIVAEFFQHYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L+L++K +++  +  D AIR  K ++ SSL+ R L+   M+ +A+P YL+   EP 
Sbjct: 121 IKIDLLLNDKHVNLISEGIDVAIR-AKNLEDSSLVARHLLDNPMYLFASPDYLEQYGEPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  HN + +  L    + +FN     ++    P     Q ++   ++   + G GI
Sbjct: 180 HPNELSTHNCLIYSGLQDAHIWNFN---HGEKEYSVPVKGNFQSDNGDVLLDVALTGVGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP ++ K +    +L +IM         +   YP+      K++ F +F+  K  +
Sbjct: 237 VSLPIWMAKAHLTSGHLRQIMTKYSGQQLPINAIYPQRRYTPLKVRCFIDFLKQKLSE 294


>gi|78064788|ref|YP_367557.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965533|gb|ABB06913.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 294

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLTE+G
Sbjct: 3   NLTGIVAFVRTAEALSFVAAGRTLGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTEEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +       +  +  S+ +P G+LR++  + +G   L   L EF   YPD++
Sbjct: 63  RHFYERCQRILEDFRDAEATVTASAQRPRGRLRVSLPV-IGYRFLLPVLPEFRQRYPDVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + 
Sbjct: 122 LDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L+ H  + +    P   +  +W    D        + L  N+  ++    + G GI  
Sbjct: 181 RDLEAHECVRY--CFPTTGKLQDWALAADDGTPLKLRTALTCNNMEALRGTVLAGLGIGY 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++ +D   +  LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 239 MPDFLARDALEHGELVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 292


>gi|149377206|ref|ZP_01894954.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
 gi|149358505|gb|EDM46979.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
          Length = 296

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 139/293 (47%), Gaps = 7/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  V    SF  A+E + +S++++SR +  LE+ +G++L +R  R L+LT +G   
Sbjct: 6   EMQTFCTVVDESSFVAASEAMGMSKAAVSRYVGELESRLGVRLLHRTTRRLSLTAEGEVF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +E  + EL   S    G LRI   +  G   L     +F   YP++++ +
Sbjct: 66  YVRCRELLAGVEEAEAELTSRSGVAKGVLRINAPVSFGIRHLAPLWGQFHSEYPNVELNI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +DI  +  D AIR+   +++S+L+ R+L T  +   A+P YL     P    +L
Sbjct: 126 DLSDRIVDIVEEGFDLAIRIAS-LRNSTLVSRRLTTTRLVVCASPEYLSAHGTPEHPGDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H +I + +L       F+     D P+       +  N+  +     V G G+   P 
Sbjct: 185 IHHKIIAYSNLATGNDWHFD---GPDGPLSTRIRPWMHANNGETCCAAAVAGQGVIHQPS 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++V+D+     LV +M D  +    VY  YP     T K++A  +F+     D
Sbjct: 242 FLVQDDLDAGRLVELMPDYRSDELGVYAVYPTRKFVTPKVRALVDFLVSAFPD 294


>gi|170701865|ref|ZP_02892794.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133223|gb|EDT01622.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 296

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 139/298 (46%), Gaps = 8/298 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS  + + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TL
Sbjct: 1   MSMENLNGIAAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G   +     +       +  +  S+ +P GKLR++  + +G   L   L EF   Y
Sbjct: 61  TDEGRHFYERCQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+++ L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     
Sbjct: 120 PDVELDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGT 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L+ H+ + +       ++D+   A    P+     + +  N+  ++    + G 
Sbjct: 179 PRAPHDLEAHDCVRYCFPTTGKLQDWALAARDGTPLKL--RTAMTCNNMEALRGSVMAGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  +PD++ +D      LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 237 GIGYMPDFLARDALDTGALVTVLDDYRIAPGQFSIMWPSSRQLSPKLRVFVDFLCERL 294


>gi|304411683|ref|ZP_07393295.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307306265|ref|ZP_07586010.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304349871|gb|EFM14277.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306911138|gb|EFN41565.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 299

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 142/291 (48%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  V   GSF+ A+++L LS+S++S++I+ LE  +GI+L +R  R L+LTE G+
Sbjct: 4   FSALPIFVTVVECGSFSQASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRCLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +                  + E    P G LRIA  +  G+  +   + EFL  YP IQ+
Sbjct: 64  RYFDYIRPAVKLAADGLDAISELQQVPQGNLRIAVPMVFGRLYIAPLIPEFLRRYPKIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ +D+K  ++     D AIR+ + +  SSLI RK+        A+P YL     P + Q
Sbjct: 124 QMQMDDKTTNLIAGGFDLAIRIGE-LPDSSLIARKIAPCLSVICASPEYLVRHAAPQTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +     +   ++ +L+  D    +P     QVN+  +I Q  + G GIA L
Sbjct: 183 QLSQHNCLFYSYF--RDGVEWTFLSPQDPTRIQPN-GNYQVNNSDAIHQATLDGLGIANL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P ++V  +     L  ++ D   P   +Y  YP+      K+     F+  
Sbjct: 240 PRFMVDSDLQAGRLQALLTDHPLPEHGIYAVYPQRKHLPTKVSVLIEFLME 290


>gi|163748493|ref|ZP_02155747.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161332071|gb|EDQ02748.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 300

 Score =  281 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 7/299 (2%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+ +  +D + VF  V ++G F+ AAE +  S S IS++++ LE  +G++L  R  R + 
Sbjct: 1   MTMNKLFDGVMVFTQVVKTGGFSAAAELMGHSTSYISKEVNKLEERLGVRLLNRTTRSIA 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT +G   ++   ++    E     L    + P G LR++T +  G N LQ  L E++ L
Sbjct: 61  LTPEGKAYYQECQQLVADAEQAVNMLTLHELAPKGILRLSTPVGFGNNYLQPILAEYMRL 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP++ + L L+++ +D+  +  D AIR    ++ SSLI RK+ +   +  A+P YL    
Sbjct: 121 YPNVSLDLDLNDRKVDVVAEGYDLAIRASLQLEESSLICRKIFSCKGYIVASPGYLSKHG 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P   QEL +HN   + +L       FN      +P        L  NS    +   +  
Sbjct: 181 RPHHPQELSRHNCFCYSNLKSPNKWQFN--DKEGKPYSVEVRQKLVCNSAEMELALVLDD 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GI  LP + +++   +  L  + ED+  P   V+  YP     + K++AF +    + 
Sbjct: 239 LGICRLPMFYMEEEIKSGKLEILFEDLPAPEIDVFVVYPSRKHLSPKVRAFIDLTVEQL 297


>gi|37522120|ref|NP_925497.1| LysR family transcriptional regulator [Gloeobacter violaceus PCC
           7421]
 gi|35213120|dbj|BAC90492.1| LysR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 316

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 140/291 (48%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F     +GSF+  A ++  +Q ++S+QI+ LE  +G +L  R  R L  TE+G + +
Sbjct: 7   MRSFVRAVETGSFSAVAREMATTQPTVSKQIAALEEHLGARLLVRSTRRLGPTEEGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    V   +E  +  ++ +  +P G+LR++  +  GQ  +   +KEFL  YPDI++ L 
Sbjct: 67  RQCRRVLEAIEEAEASVRSA-ERPFGRLRVSCPVAFGQYRIVPRVKEFLDRYPDIELDLT 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+    A+ AIR+   ++ SSL+  ++ T       +  Y     EP ++++L 
Sbjct: 126 MTDGFVDLIEAGAELAIRIGL-LEDSSLVAHRIGTTRRVTVGSAAYFAGAGEPRTLEDLT 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN + +  L       F    +   P+        Q N+  +I +  + G G+A+ P +
Sbjct: 185 RHNCLVYTHLATGNTWSFE---SQSGPVQVKVRGNFQCNNSAAIREAVLAGLGVAVSPVW 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  ++     L  ++ D   P   ++  Y +      +++ F +F+    R
Sbjct: 242 LFGEDLDRGVLQVVLHDFQPPPLPIHAVYLKDRYQPARVRCFVDFLAAAFR 292


>gi|325527084|gb|EGD04503.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 294

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 136/294 (46%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G
Sbjct: 3   NLNGIVAFVRTAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   L   +  +  S+ +P GKLR++  + +G   L   L EF   YPD++
Sbjct: 63  RHFYERCQRILEDLRDAEATVSASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRARYPDVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + 
Sbjct: 122 LDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFGFVLCATPAYLARAGTPRTP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H+ + +    P   +  +W    D        + +  N+  ++    + G GI  
Sbjct: 181 RELAAHDCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGY 238

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++ +D      LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 239 MPDFLARDALEQHALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 292


>gi|269103262|ref|ZP_06155959.1| transcriptional regulator LysR family protein [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163160|gb|EEZ41656.1| transcriptional regulator LysR family protein [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 295

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 146/293 (49%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  V+ + SFT AA+++ +S + +SRQIS LE  +  KLFYR  R ++LTE+GS
Sbjct: 4   WEGVTEFVAVSETESFTAAAKKIGISTAQVSRQISALENRLNTKLFYRTTRKVSLTEEGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   +V   LE  +  +      P G +++   +  G+  +   + +F+L YP+I++
Sbjct: 64  IYYRHCRQVMDGLEEAERAITSLRGVPQGLIKMTAPVTYGEKYIVPLVNDFMLQYPEIEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K + +SS++ ++L T  M+  A+P YL+    P ++ 
Sbjct: 124 AMDLTNRQMDLVEGAFDLAIRLGK-LGNSSMMAKRLTTRTMYLCASPAYLEKYGMPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  HN +           D+       +         L  NS   +    + G GIA L
Sbjct: 183 ELRHHNCLI-------GNHDYWRFQEKGKEKSIRIAGSLSCNSGYGLRDAVIKGIGIAQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P+Y V ++    ++V I+E    P   ++  YP     + K++   +F+  + 
Sbjct: 236 PEYYVDEDLANGSIVPILEKFQEPDEGIWALYPHNRHLSPKVRLLVDFLAEEL 288


>gi|320159388|ref|YP_004191766.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
 gi|319934700|gb|ADV89563.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
          Length = 307

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/295 (29%), Positives = 149/295 (50%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F +V ++GSF+ AA +   +Q+++S++++ LE ++G+KL  R +R L+LTE
Sbjct: 1   MDKLSAIRAFVLVVQTGSFSAAAREQGTTQATMSKKVAALEDDMGVKLLTRTSRELSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +L+  +   +    +P+G LRI+  +  G   +   L EFL  YP+
Sbjct: 61  VGQDYFHRCVSILSELDEAESNARSQMGRPTGSLRISAPVVFGNRFIGPVLAEFLRSYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L +K +D+  +  D AIR  K ++ SSLI R L    M   AAP YL    EP 
Sbjct: 121 LKVDLHLSDKHVDLVAERIDLAIR-AKQLEDSSLIARHLFDNPMVLVAAPSYLSTNIEPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L  HN I +  L    +  F+      +          + +S   I+Q  + G GI
Sbjct: 180 SPEQLASHNCILYSMLKSIGVWHFS---QKGKSQSVAVSGSCRCDSGDVILQLAIDGVGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP ++VK   D+  LV ++ +        +  +P+      K+++F +FI LK
Sbjct: 237 AQLPVWMVKEFVDSGQLVILLREFEVNPLPFHAVFPQNRYVPLKVRSFLDFIKLK 291


>gi|161523309|ref|YP_001578321.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351918|ref|YP_001947546.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221214265|ref|ZP_03587237.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160340738|gb|ABX13824.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335940|dbj|BAG45010.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221165920|gb|EED98394.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 294

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 136/294 (46%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G
Sbjct: 3   NLNGIVAFVRAADALSFVAAGRTLGISASAVGKTIARLEQSLGVRLFNRTTRRITLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   L   +  +  S+ +P GKLR++  + +G   L   L EF   YPD++
Sbjct: 63  RHFYERCQRILEDLRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + 
Sbjct: 122 LDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPRAP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L+ H+ + +    P   +  +W    D        + +  N+  ++    + G GI  
Sbjct: 181 CDLEAHDCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGY 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++ +D      LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 239 MPDFLARDALERGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 292


>gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
          Length = 287

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 137/289 (47%), Gaps = 9/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  + SFT A  +L +S++ +S+ +  LE  +G +L  R  R L+LTE G   +
Sbjct: 1   MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++  +    +S+  P G L++A  +  G   +   L E++  YP++++ + 
Sbjct: 61  ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  D  D AIR+   +  S LI RKL T  +   A+P YL+    P + ++L 
Sbjct: 121 LADRRVDLIEDGYDLAIRVGN-LPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLK 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +            W+    +     R+   ++ N+   +    + G+G+   P 
Sbjct: 180 QHACLNYSYSSSGD----EWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPH 235

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +IV D+     LV +M+D       +Y  YP     + K++ F +++  
Sbjct: 236 FIVADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYLVA 284


>gi|212636087|ref|YP_002312612.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212557571|gb|ACJ30025.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 295

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/294 (29%), Positives = 147/294 (50%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  V  SGSFT AAE+  L +S+ISR+++ LE ++GIKL  R  R   LTE G
Sbjct: 3   DLNDMMVFATVVNSGSFTAAAEEFGLPKSNISRKVTRLEDKLGIKLLERSTRSQHLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +  +++  +  ++     P G L+I  +I +GQ LL  +L  F   YP++ 
Sbjct: 63  QVYFEYCQRIMDEIQGAEESVEGLMSAPRGTLKICASITVGQCLLSPHLAPFKKAYPEVH 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS- 182
           + + L N+ +D+  +  D AIR+   ++ SSLI ++L    +  +A+P YL     PL+ 
Sbjct: 123 LDIHLTNRRVDLIEEGFDAAIRVG-TLEDSSLIAKRLCKRELFLFASPDYLATSNIPLAE 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H+ +      PK              I  P    ++ + +  + Q  + G+GI 
Sbjct: 182 PSDLKQHDCLFMSATNPKPQWHLKSGKESQTIIIAP---TIRCDDFTVLRQLAIDGAGIT 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP YI +    +  LVR+++  I+ S  +Y  YP     T KL+ F +++  +
Sbjct: 239 KLPSYICEKAVKDGKLVRVLDQWISESVDIYALYPSHKGATPKLRVFLDYLKHQ 292


>gi|323498536|ref|ZP_08103529.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323316425|gb|EGA69443.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 303

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 142/294 (48%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +  + VF  V   G F+ AA++L +++S++S++I+ LE E+GI+L +R  R L+LTE G
Sbjct: 3   TFSSIPVFVAVVECGGFSPAADKLKITKSAVSKRINQLEDELGIRLLHRTTRKLSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +   S+     +     + E   +P GKL++   +  G   +   + EFL LY D++
Sbjct: 63  QRYYSYVSQSLSLAQQGVDAVTELQGQPRGKLKLTAPMSFGVQYVAPLVAEFLALYSDVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L+++ +D+     D  IR+   +  S+L+ ++L        A+  YL    +P   
Sbjct: 123 IDLQLEDQMVDLIESGFDIGIRIGH-LPLSNLVAKRLTPCKSILCASEDYLNQFGQPTRP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN + +          F    +  +         L VN+  +I +  + G GI  
Sbjct: 182 SDLTQHNCLQYAYFRGGNEWTFT---SHGKEFKVMPRGRLVVNNSEAIRRALLEGLGIGQ 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP +IV  +     L+ +M++   P   VY  +PE      K++AF +FI  + 
Sbjct: 239 LPTFIVAKDIAAGKLMGVMQEYQLPEHAVYAVFPERKHMPLKVRAFLDFIASRL 292


>gi|221202151|ref|ZP_03575186.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221208788|ref|ZP_03581787.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221171420|gb|EEE03868.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221177945|gb|EEE10357.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 294

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 136/294 (46%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G
Sbjct: 3   NLNGIVAFVRAADALSFVAAGRTLGISASAVGKTIARLEQSLGVRLFNRTTRRITLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   L   +  +  S+ +P GKLR++  + +G   L   L EF   YPD++
Sbjct: 63  RHFYERCQRILEDLRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     P + 
Sbjct: 122 LDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPHAP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L+ H+ + +    P   +  +W    D        + +  N+  ++    + G GI  
Sbjct: 181 CDLEAHDCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLGIGY 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++ +   +   LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 239 MPDFLARGALERGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 292


>gi|292491695|ref|YP_003527134.1| LysR family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291580290|gb|ADE14747.1| LysR substrate-binding protein [Nitrosococcus halophilus Nc4]
          Length = 305

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 139/293 (47%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V   GSF+ AA ++  S+S++S+ ++ LE  +G +L  R  R L+LTE G
Sbjct: 3   DLNLMAIFARVVEVGSFSEAARRMDTSRSAVSKAVAKLEKSLGARLLNRSTRHLSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    + +  + E  +  +     +P G LR++ ++  G   +   L +F+  YP+I+
Sbjct: 63  AALVEHAARILEEAEQAERVVSSLHAEPRGMLRVSVSVAFGTLHIAPALADFVARYPEIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + + ++ ID++ +  D  IR+       +L+ RKL  +H    A P Y      P + 
Sbjct: 123 IDMAITDRPIDLAEEGYDVIIRVTGE-PDLNLVARKLAPVHRKLCATPEYFLRRGIPRTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ + +     +    F      +  I  P    L++N   ++ Q  + G GIAL
Sbjct: 182 EDLVNHDCLDYTLSGEQGYWHFT---GPEGKIAVPVSGPLRINDDDALSQAVLGGLGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP + V  +     L  ++ + +     +Y  Y        K++AF +F+  +
Sbjct: 239 LPTFTVGKDLQEGRLQAVLSEYLPVERYIYAMYLPTRHLPAKIRAFIDFLLAR 291


>gi|114768949|ref|ZP_01446575.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114549866|gb|EAU52747.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
          Length = 299

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/297 (37%), Positives = 178/297 (59%), Gaps = 4/297 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA  GS THA + LHLSQS++SRQI  LE ++ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHSVADVGSLTHAGDVLHLSQSAVSRQIRALEEKLNVTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+  TS++  +LET +  +++S  +  G+LR+ TT   G   L   +      YPD+
Sbjct: 61  GELLYEATSQMSKRLETAEARIRDSEDEVFGELRVTTTTGFGTLWLAPRINRLYEQYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I LIL+ + +D+ M  AD AIR+++P Q+  L++R+L+ + M  YA   YL     P S
Sbjct: 121 NIDLILEERVLDLPMREADVAIRMKEPSQAD-LVRRRLMNVKMRLYATQKYLDKHGTPTS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I ELD H L+T G    +  E   W   +   + +   S L +N+Y  ++Q  +  +GI 
Sbjct: 180 IDELDVHRLVTQGLEARQVNESIAWFKPI---LEQNHGSNLTLNNYFGVLQAVLHDTGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +LPDY+  + P LVR++ +  +    V+  +PE L+++ +++AFR+F+  + +  + 
Sbjct: 237 VLPDYVSDEVPELVRVLPEDQSKEIPVFLAFPEELRHSKRVQAFRDFVLEEIKTHRL 293


>gi|54303664|ref|YP_133657.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46917095|emb|CAG23857.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 300

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 8/302 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+F+   +D + VF  V  SGSFT AA     S S IS++I+ LE  +GI+L +R  R L
Sbjct: 1   MAFNAVLFDGMVVFTEVVNSGSFTQAALNSGHSTSYISKEINKLEARLGIRLLHRTTRTL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT +G    +   ++    +  +  +     KP G+L+++  +  G + L+  L +F  
Sbjct: 61  SLTPEGELYFQQCLQLIEDAQVAENAITGQQEKPQGRLKVSCPVSFGLSNLRPILSQFTE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP+I ++L L+++ IDI  +  D AIR  K +  SSLI R++   +    A+P YL+  
Sbjct: 121 QYPEIVLELDLNDRKIDIVAEGYDVAIRASKQLDDSSLISRRIRRSYTVVIASPDYLQKH 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P    EL +H  I++  +  +    ++ +    + I  P  S +  N+    +  C+ 
Sbjct: 181 GTPKHPSELSQHKTISYSYI--RQGNSWDLIDQDGQTIHIPIKSQVVTNNSYMELALCMA 238

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GI +LP + + D      LV +  D       ++  YP     + K++ F +FI    
Sbjct: 239 GQGITILPHFHLHDEVEQGKLVALFTDFPRLPIDIFMVYPSRKHMSAKVRCFLDFIMEHL 298

Query: 295 RD 296
            D
Sbjct: 299 GD 300


>gi|256160226|ref|ZP_05457920.1| hypothetical protein BcetM4_14551 [Brucella ceti M490/95/1]
 gi|256255432|ref|ZP_05460968.1| hypothetical protein BcetB_14323 [Brucella ceti B1/94]
 gi|261222636|ref|ZP_05936917.1| LysR family transcriptional regulator [Brucella ceti B1/94]
 gi|265998601|ref|ZP_06111158.1| LysR family transcriptional regulator [Brucella ceti M490/95/1]
 gi|260921220|gb|EEX87873.1| LysR family transcriptional regulator [Brucella ceti B1/94]
 gi|262553225|gb|EEZ09059.1| LysR family transcriptional regulator [Brucella ceti M490/95/1]
          Length = 279

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 142/277 (51%), Positives = 193/277 (69%), Gaps = 2/277 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+  A +GSFTHAA+ LHLSQS+ISRQ+S LE +VG+ LF+RHARGL LTE
Sbjct: 4   PLDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLE  + +L ES  KPSG+LR+ TT+ LG   L   ++EF+ LYPD
Sbjct: 64  QGETLYRTAHDVLMKLENVRSKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QLILDN+++D++M +ADCA+RLR+P Q   LIQR+L  +HMH YA+  Y+    +  
Sbjct: 124 VQLQLILDNEELDLTMRHADCAVRLRQP-QQPDLIQRRLFIVHMHVYASAGYVSKYGKLN 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI E+D+H ++TFG+  P  +   NWL T  RP G  RI  LQVN+ LS+ +    G GI
Sbjct: 183 SIDEIDQHRIVTFGEPAPSYLTGLNWLETAGRPDGSARIPALQVNNLLSVRRAVQRGVGI 242

Query: 242 ALLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEAL 277
           A+LPDY+      LV+++ ++   PSF  +FCYPEAL
Sbjct: 243 AVLPDYMADKESGLVQLLPELEEIPSFDTFFCYPEAL 279


>gi|167587902|ref|ZP_02380290.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 294

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 137/297 (46%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ + + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF+R  R +TLT
Sbjct: 1   MN-NLNGIVAFVRAAETLSFVAAGRALGISASAVGKTIAKLEQSLGVRLFHRTTRRVTLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G         +       +  +  S+ +P GKLR++  + +G   L   L EF   YP
Sbjct: 60  DEGRHFFERCQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRRHYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L  +++ +D+     D  IR    +  SSL+ R+L        A P YL     P
Sbjct: 119 DVELDLDFNDRMVDVVEGGFDAVIRSGA-LSDSSLMSRRLGPFGFVLCATPAYLAQAGTP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L+ H+ + +    P   +  +W    D        + +  N+  ++    + G G
Sbjct: 178 RVPRDLEAHDCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVLAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  +PD++ +D   +  LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 236 IGYMPDFLARDALAHGALVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 292


>gi|293603675|ref|ZP_06686095.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292817943|gb|EFF77004.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 306

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 144/291 (49%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ +  V   GSF  AA+++  ++S ++RQI+ LE + G++L  R  R L++T+ G   
Sbjct: 6   AMQTYAKVVELGSFAAAADKMGQARSVVTRQIAYLEQKYGVRLLNRTTRKLSMTDAGRAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  ++   ++ LQ    +PSG+LR++  +  G   L   + E+L  YPD+ I L
Sbjct: 66  YERVRPILAEVADLELSLQAEGQRPSGRLRVSAPVSFGILHLGPAIAEYLQRYPDVIIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ +D+  D  D A+R+  P+Q SSL+ R L    +   AAP YL+    P + ++L
Sbjct: 126 DLNDRVVDLVEDGYDVAVRIG-PLQDSSLVARPLAPQQLLVCAAPAYLQQHGTPATPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  + +            W    D      R+ + L+ N+   +    + G G+ L P
Sbjct: 185 KQHRCLHYSYASTGN----EWHFEKDGVTHLVRVNAALRANNGDVLRTAALAGHGVILQP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +++V D+     LV ++ D      ++Y  YP     + K+++F   +  +
Sbjct: 241 EFLVGDDIRAGRLVALLADYAHTPISMYAIYPHRRFLSPKVRSFVEHLEER 291


>gi|99078218|ref|YP_611476.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035356|gb|ABF62214.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 305

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 136/290 (46%), Gaps = 9/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + V   VA +  F  AA +L +S+S++S++I+ +E  +G +LF+R  R ++LTE G   
Sbjct: 6   DIPVVVAVAETQGFAAAARRLGVSKSAVSKRITQIENRLGAQLFHRSTRNVSLTEAGEHF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +          +  +  +      P G+LR+   +  G+  +   +  FL  YP + I +
Sbjct: 66  YSHAVRAQEAAQEAEDSVLALQEAPKGRLRVNVPMAFGRLHVAPLISGFLARYPGVSIDM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D++ +D+  D  D A+R    +  S+L+ RK+  +     AAP YL     P ++ +L
Sbjct: 126 VMDDRMVDLFADGFDLALR-GGTLADSALVARKIAALRNVLVAAPTYLARHGAPQTVSDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + +        +   W+   D      R S    VN+  ++ +  + G+GI  LP
Sbjct: 185 RFHNCLQYSF----SRDFQEWVFDCDGKAETFRPSGSYSVNNGEALREAVLGGTGIGRLP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +    +     LVR++     PS T+Y  YPE      K++ F +++  
Sbjct: 241 TFTAGPDLASGRLVRVLPQCQLPSQTLYAIYPERRYLPTKVRVFIDYLLE 290


>gi|89074606|ref|ZP_01161071.1| transcriptional regulators, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89049544|gb|EAR55104.1| transcriptional regulators, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 299

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 147/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V ++ SF+  A + + +Q++IS++I+ LE ++  KL  R +R L LTE
Sbjct: 1   MDQLGAMRAFIRVVQTESFSATAREQNTTQATISKKIAALEHKLEGKLLTRSSRDLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++ +     +  +L+  +  ++     P G ++IA  I  G   +   + EFL  YPD
Sbjct: 61  VGAEYYERCVAIISELDEAESNVRAHRALPQGVIKIAAPITFGNIFIAPIISEFLARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L +K +DI  +  D AIR R+ ++ SSLI R L        A+  Y+    EP+
Sbjct: 121 ISVDLTLSDKHVDIISEGVDVAIRARE-LEDSSLIARHLFDNPNILVASSAYIAKYGEPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L++HN I +   +   M ++N+     +          + +S  +I++  + G GI
Sbjct: 180 TPEDLNQHNCIIYS--LSSTMNNWNFYNKKIKK-SVSVSGNFKSDSCDAILRSVLDGVGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ALLP ++V++      + ++M    T     +  Y      + K++ F +F+  K
Sbjct: 237 ALLPVWMVENEINAGRIKQLMPSYKTQPLPFHAIYTNNRYVSLKIRCFIDFMKEK 291


>gi|90409751|ref|ZP_01217768.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90329104|gb|EAS45361.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 300

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/297 (28%), Positives = 146/297 (49%), Gaps = 8/297 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+F+   +D + VF  V  SGSFT AA     S S IS++I+ LE  +GI+L +R  R L
Sbjct: 1   MAFNAALFDGMVVFTEVVNSGSFTQAALNSGHSTSYISKEINKLEARLGIRLLHRTTRTL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT +G    +   ++    +  +  +     KP G+L+++  +  G + L+  L +F  
Sbjct: 61  SLTPEGELYFQQCQQLIEDAQVAENAITGQQEKPQGRLKVSCPVSFGLSNLRPILSQFTA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I ++L L+++ IDI  +  D AIR  K +  SSLI R++   +    A+P+YLK  
Sbjct: 121 QYPKIVLELDLNDRKIDIVAEGYDVAIRASKQLDDSSLISRRIRRSYAVVIASPNYLKKH 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P    EL +H  I++  +  +    ++ +    + I  P  S +  N+    +  C+ 
Sbjct: 181 GTPKHPSELSQHKTISYSYI--RQGNSWDLIDKDGQTIHIPIKSQVVTNNSYMELALCMA 238

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G GI +LP + + D      LV +  D       ++  YP     + K++ F +FI 
Sbjct: 239 GQGITILPHFHLHDEIEQGKLVALFSDFPRLPIDIFMVYPSRKHMSAKVRCFLDFIM 295


>gi|71279467|ref|YP_270278.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71145207|gb|AAZ25680.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 302

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  +GSFT AA++L + ++++SR++S LE  + + L  R  R   LT
Sbjct: 1   MEHDLNDMMVFLAVVETGSFTLAADRLGMPKANVSRKVSRLEKNLAVTLLERSTRSQHLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       ++ +L+     + E     +G+L+I  ++  GQ +L+  L +F+  YP
Sbjct: 61  EAGRRYLAHCKRIHEELDLATASVCELFHSYTGELKIGASVASGQQVLRPALGKFMRQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++QL L N+ +D   +  D  IR+ + +  S LI +KL  I+   +A+P YL     P
Sbjct: 121 DLKVQLNLVNRRVDFIEEGFDVVIRIGQ-LNDSMLIAKKLGAINRKIFASPSYLAKQGNP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             +++L +H L+    L     +D      +T            L V+ +  + Q  V G
Sbjct: 180 DKVEQLTEHQLLIMNPLNISGNKDLKLPLTSTDHETFTLDCQPRLLVDDFSMLKQAIVDG 239

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI +LPDY+ +    +  LV I+ D       +Y  YP+      K+KAF +F+  
Sbjct: 240 LGIGVLPDYMCRQEVASGQLVNILPDWGMAKVDIYALYPKHRAKIPKVKAFIDFVSE 296


>gi|170731500|ref|YP_001763447.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169814742|gb|ACA89325.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 294

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G
Sbjct: 3   NLTGIVAFVRTAEALSFVAAGRALGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +       +  +  S+ +P GKLR++  + +G   L   L EF   YPD++
Sbjct: 63  RHFYERCQRILEDFRDAEATVTASAQRPRGKLRVSLPV-IGYRFLLPVLPEFRQRYPDVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR   P+  SSL+ R+L        A   YL     P + 
Sbjct: 122 LDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATLAYLAQAGTPRTP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+ H+ + +    P   +  +W    D        + +  N+  ++    + G GI  
Sbjct: 181 RELEAHDCVRY--CFPTTGKLQDWALAADDGTPLTLRTAMTCNNMEALRGAVLAGLGIGY 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++ +D   +  LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 239 MPDFLARDALEHGTLVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 292


>gi|134294260|ref|YP_001117995.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137417|gb|ABO53160.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 294

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F   A + SF  A   L +S S++ + I+ LE  +G++LF R  R +TLT++G
Sbjct: 3   NLNGIAAFVRAAEALSFVAAGRALGISASAVGKTIARLEQSLGVRLFNRTTRRVTLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   L   +  +  S+ +P G+LR++  + +G   L   L  F   YP+++
Sbjct: 63  RHFYERCQRILEDLRDAEATVTASAQRPRGRLRVSLPV-IGYRFLLPVLPAFRECYPEVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR   P+  SSL+ R+L        A P YL     P   
Sbjct: 122 LDLDFNDRMVDVVEGGFDAVIR-SGPLSDSSLMSRRLGPFAFVLCATPAYLARAGTPRVP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +LD H+ + +    P   +  +W    D        + +  N+  ++    + G GI  
Sbjct: 181 HDLDTHDCVRY--CFPTTGKLQDWALAADDGTPLKLRTAMTCNNMEALRGAVMAGLGIGY 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++ +   D   LV +++D           +P + + + KL+ F +F+  + 
Sbjct: 239 MPDFLARDALDAGTLVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERL 292


>gi|262278398|ref|ZP_06056183.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258749|gb|EEY77482.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 344

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 147/297 (49%), Gaps = 8/297 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D +  ++VF  V  + SF+ AA+ L L ++S++  I GLE  + ++L  R  R L+L
Sbjct: 1   MRVDLFHAMKVFNKVVETNSFSLAADSLGLPRASVTTTIQGLEKHLQVRLLNRTTRKLSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G+  +  TS +   +E  +    +S   P G+LRI     +G+ +L   L +F   Y
Sbjct: 61  TPDGAVYYERTSRILADVEDVESNFHDSERGPRGRLRIDVKASIGRLILIPMLCDFHAKY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI + + + ++ +D+  D  DC IR+ + ++ SSL+ R++ TI     AAP YL    E
Sbjct: 121 PDIDLVIGMSDRPVDLVQDAVDCVIRIGQ-LKDSSLVARRIGTIQCVTVAAPRYLAEHGE 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P +I +L KH ++ +     +   + +W   VD  I    +   + VN   S +   V G
Sbjct: 180 PQTIDDLQKHQVVHY--FNSRTGRNIDWDFMVDGEIHSVGVKGRVSVNDGDSYVDLAVQG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G+   P Y+V    ++ +L  ++ + +     +   Y +    + K++ F +++  
Sbjct: 238 FGLIQCPYYMVAKHLEDGSLKEVLTEWLPAPMPISVVYLQNRHLSPKVRVFVDWVAE 294


>gi|84386490|ref|ZP_00989517.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84378595|gb|EAP95451.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 298

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 136/292 (46%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L++F  +A + + + A ++L LS +  S  IS LE  +G++L +R  R ++LTE+
Sbjct: 1   MNIEHLKLFVRLASTHNISMAGQELGLSPAVASSHISKLEDNLGVRLVHRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        EV   ++  +  +      P+G LR+  +   G+  L   L  FL  YP +
Sbjct: 61  GEAFLPHAEEVLSSVDAAKSAVGVGCDSPTGTLRVTASASFGRLHLVPALPGFLERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L +  +D+     D AIR+ + ++ S+LI RKL T      A+P YL    +P +
Sbjct: 121 KVDLRLSDSMVDVVEGGFDIAIRISE-LKDSTLIARKLATDKRIVCASPDYLIKYGKPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L+ H  I+   L        NW    +  P         + ++  ++      G GI
Sbjct: 180 PRDLNDHQCISLIGL-------ENWTFNTESGPKTIKASGSFRADNGEALRDAASGGMGI 232

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289
            +  ++   +   +  LV+I+ED    S   ++  YP       K++AF ++
Sbjct: 233 TVTSNWCAYEQLKSGQLVQILEDYPLTSEPAIWAVYPSTRLLAPKVRAFIDY 284


>gi|311104236|ref|YP_003977089.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758925|gb|ADP14374.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           33 [Achromobacter xylosoxidans A8]
          Length = 310

 Score =  278 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 144/288 (50%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ +  V   GSF  AA+++  ++S ++RQI+ LE + G++L  R  R L++T+ G   
Sbjct: 6   AMQTYAKVVELGSFAAAADKMGQARSVVTRQIAYLEQKYGVRLLNRTTRKLSMTDAGRAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  ++   ++ LQ    +PSG+LR++  +  G   L   + E+L  YPD+ I L
Sbjct: 66  YERVRPILAEVADLELSLQAEGQRPSGRLRVSAPVSFGILHLGPAIAEYLQRYPDVIIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ +D+  D  D A+R+  P+Q SSL+ R L    +   AAP YL+    P + +EL
Sbjct: 126 DLNDRVVDLVEDGYDVAVRIG-PLQDSSLVARPLAPQQLLVCAAPEYLRRHGTPQTPEEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  + +            W    D      R+ + L+ N+   +    + G GI L P
Sbjct: 185 KQHRCLHYAYASTGN----EWHFEKDGVTHLVRVNAALRANNGDVLRTAALAGHGIILQP 240

Query: 246 DYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D++V D+     LV ++ D    S ++Y  YP     + K+++F   +
Sbjct: 241 DFLVGDDIRAHRLVALLTDYTHTSISMYAVYPHRRFLSPKVRSFVEHL 288


>gi|83592377|ref|YP_426129.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83575291|gb|ABC21842.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 306

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  VA  GSF+ AAE+L LS+S +S+ +S LE  +G +L  R  R L+LTE
Sbjct: 1   MDRLTLMETFTKVAELGSFSRAAERLGLSRSVVSKYVSALEDRLGARLVNRTTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   LE  +           G LRI   +  G   L   +  FL  +P 
Sbjct: 61  VGEVYLLRCQAILADLEEAEQAAGALHGAARGTLRINAPMSFGFRHLAAAIPPFLAHHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + LD++ +D+     D A+R+   +  SSLI  +L  +H+   A+P Y+K    P 
Sbjct: 121 LGVDMTLDDRFVDLLDAGFDVAVRIGS-LPDSSLIAVRLAPLHIVVCASPEYIKAQGAPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  HN + +       +      A     +  P     + N+  ++    V G G+
Sbjct: 180 RPEDLTGHNCLIYSLQRFGDLYPLVH-AGGGEQVSVPVHGRFRANNGDALRAAAVAGGGV 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + P ++  D+     LVR++ +   P   +   YP     + K++AF + +
Sbjct: 239 MISPTFLCGDDLRAGRLVRLLPEWTGPEQGINAVYPHNRHVSAKVRAFVDHL 290


>gi|157376708|ref|YP_001475308.1| carbonate dehydratase [Shewanella sediminis HAW-EB3]
 gi|157319082|gb|ABV38180.1| Carbonate dehydratase [Shewanella sediminis HAW-EB3]
          Length = 309

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 142/292 (48%), Gaps = 5/292 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  V +SG F+ AAE +  S S +S++I+ LE  +G++L  R  R + LT +G 
Sbjct: 7   FDGIVIFTQVVKSGGFSAAAESMGHSSSYVSKEINKLEARLGVRLLNRTTRSIGLTPEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++    E     + +  V P G+L+I++ I    + LQ  L E++  YP++ +
Sbjct: 67  AYYQQCQQLMVDAEQAVELITQHDVDPKGRLKISSPIGFANSYLQPILSEYMQRYPNVSL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L+++ +D+  +  D AIR    ++ SSLI RK+ +   +  A+  Y+     P   Q
Sbjct: 127 ELDLNDRRVDVVAEGYDLAIRAALQLEESSLICRKIFSCKGYTVASKAYISRHGRPHHPQ 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H+ + + +   K    + +  +   PI       +  N+    +   + G GI  L
Sbjct: 187 ELSRHHCLCYSN--HKTPGRWQYKDSEGDPIQVDVRQKVLSNNAEIQLALTLSGHGICRL 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P + + D   +  L  +   +  P   VY  YP     + K++AF + +  K
Sbjct: 245 PKFYMTDALASGQLEILFPALPAPEIDVYVVYPSRKHLSPKVRAFIDLVVEK 296


>gi|148974131|ref|ZP_01811664.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965828|gb|EDK31076.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 298

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 135/291 (46%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L++F  +A + + + A ++L LS +  S  IS LE  +G++L +R  R ++LTE+
Sbjct: 1   MNIEHLKLFVRLASTHNISMAGQELGLSPAVASSHISKLEDNLGVRLVHRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        EV   ++  +  +   S  P+G LR+  +   G+  L   L  FL  YP +
Sbjct: 61  GEAFLPHAEEVLSSVDAAKSAVGVGSDSPTGTLRVTASASFGRLHLIPALPGFLERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     +  +D+     D AIR+ + ++ S+LI RKL T      A+P YL    +P +
Sbjct: 121 KVDFRFSDSVVDLVEGGFDIAIRISE-LKDSTLIARKLATDKRVVCASPDYLIKYGKPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L+ H  I+   L            T + P         + ++  ++    V G GI 
Sbjct: 180 PQDLNGHQCISLIGLENWT------FHTENGPKTIKATGSFRADNGEALRDAAVGGLGIT 233

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNF 289
           +  ++   +   +  L++++ED    S   ++  YP       K++AF ++
Sbjct: 234 VTSNWCAYEQLKSGQLIQVLEDYPLTSEPAIWAVYPSTRLLAPKVRAFIDY 284


>gi|325982624|ref|YP_004295026.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212]
 gi|325532143|gb|ADZ26864.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212]
          Length = 307

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 143/295 (48%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +  F  V  +GS + AA+++ +++S +SR++  LE  +G++LF+R  R + LT+
Sbjct: 1   MDRFENMNAFVRVVEAGSISGAADRMDVAKSVVSRRLKELEAHLGVELFHRTTRQMNLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++ +  +   +   +    +      G L++A  +  G   L   + EFL  +P+
Sbjct: 61  SGRAFYQQSVRILADILEAEHATSQFHGALKGNLKVAVPLSFGLMHLGPAISEFLQAHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I   L  +++ +DI  +  D AIR+   +  SSLI R+L  I     A+P YL    EP 
Sbjct: 121 ITFDLDFNDRQVDILTEGFDLAIRIAS-LPDSSLIARRLAPIQAIMCASPSYLARMGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S +EL  H  + +  +     E++N      + I       L+ ++   +    V GSGI
Sbjct: 180 SPEELIHHRCLAYNLI--SNFENWNLYNIEGQLIRTKIAPYLKASNGEFLRDAAVAGSGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L+P +IV    +   L+ ++    +   + Y  YP+    + +++AF +F+  +
Sbjct: 238 ILMPTFIVYKEIERGALIPLLTQYTSSRLSAYALYPQTRHLSQRVRAFVDFLIQR 292


>gi|163744014|ref|ZP_02151382.1| putative transcription regulator protein [Phaeobacter gallaeciensis
           2.10]
 gi|161382702|gb|EDQ07103.1| putative transcription regulator protein [Phaeobacter gallaeciensis
           2.10]
          Length = 305

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + V   VA +  F  AA +L +++S++S++I+ +E  +G +LF+R  R ++LTE G   
Sbjct: 8   DIPVVVAVAETQGFAAAARRLGVTKSAVSKRITQIERRLGAQLFHRSTRNVSLTEAGEHF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +          +  +  +      P G+LR+   +  G+  +   +  FL  +P + +++
Sbjct: 68  YAHAVRAQDAAQEAEDSVLALQEAPKGRLRVNVPMAFGRLHVAPLISTFLARHPGVSMEM 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D++  D+  D  D A+R    +  S+L+ RK+  +H    AAP YL+    P ++++L
Sbjct: 128 VMDDRVADLFADGFDLALR-GGTLADSALVARKIAPLHNVLVAAPAYLERHGAPEAVRDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + +        +   W+      +   R      VN+  ++ +  + G+GI  LP
Sbjct: 187 STHNCLQYS----YSRDFQEWVFNSGGEVETFRPGGSYSVNNGDALREAILGGTGIGRLP 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +    +     LVR++     PS T+Y  YPE      K++ F +FI  
Sbjct: 243 TFSAGPDLATGRLVRVLPQCRLPSQTLYAVYPERRYLPAKVRVFIDFILE 292


>gi|258542767|ref|YP_003188200.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633845|dbj|BAH99820.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636904|dbj|BAI02873.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639957|dbj|BAI05919.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643013|dbj|BAI08968.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646068|dbj|BAI12016.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649121|dbj|BAI15062.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652108|dbj|BAI18042.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655165|dbj|BAI21092.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 293

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 126/292 (43%), Positives = 180/292 (61%), Gaps = 2/292 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEDVLQVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  LH+   EV+ KLE TQ  L ES  K +G+LR+ TT   G   L   L  F+   P+I
Sbjct: 61  GETLHKTVREVFSKLEMTQTLLTESKEKAAGRLRVTTTTGFGNCWLMPRLHRFMADNPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I LIL++ D+D+ M  AD A+R+  P Q   LIQR L    +  +AAP Y++    P S
Sbjct: 121 DICLILEDNDLDLGMREADVAVRMHAPRQ-PDLIQRHLADFSLPIFAAPLYIEKYGMPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++E+ +H L+ FG+  P  +   NWLA   R  G  + + L+VNS  ++      G GI 
Sbjct: 180 LEEIKEHQLVLFGEHHPP-VAHVNWLAQACRTDGSTQTAQLEVNSMAAMASAIAAGLGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +P Y  K+ P+LV+I+ ++ TP+   YF YPE L+++ ++  FR+F+  + 
Sbjct: 239 SIPTYAAKEFPDLVQILPEITTPTVDAYFVYPEELRSSKRVAVFRDFLMSEL 290


>gi|90577236|ref|ZP_01233047.1| putative transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
 gi|90440322|gb|EAS65502.1| putative transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
          Length = 301

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 84/297 (28%), Positives = 145/297 (48%), Gaps = 8/297 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +FY +   GSF+ AAE + L++S +S++I+ LE  +G++L YR  R LTLTE G  
Sbjct: 5   NNLLLFYHLIDKGSFSKAAEHIGLTKSVVSKRITALEQALGVQLIYRTTRKLTLTEAGDV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    EVY+ ++  +  +       +GK+RI      G+ +L   +  F   YPDI I+
Sbjct: 65  FYHHAREVYNAVQNAEDAMSGLGESLTGKIRITVPTISGELILPEAIAAFSRQYPDIHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+  +  D AIR    +  SS I R+LV       A+P Y+K    P    +
Sbjct: 125 MDLDNRFVDLVQEGFDIAIRTGA-MPDSSFIARQLVQARWVICASPCYIKQYGIPTQPYD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L+KHN + +        E   WL      I   ++      N+  ++    + G G+  +
Sbjct: 184 LEKHNCLGYSFQETGANE---WLIEDTLGIHTLKVKGNFTTNNASALRGAALHGQGLVYI 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P  +V ++    +LV ++ D +  S  +Y  YP   +   K+K F   I+   + ++
Sbjct: 241 PKVLVAEDLKKGDLVEVLTDYVAKSLGIYAVYPYTKQQPMKVKLFIEHIYQYYQKYR 297


>gi|90410168|ref|ZP_01218185.1| Putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90329521|gb|EAS45778.1| Putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 289

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 147/296 (49%), Gaps = 13/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  V  + SFT A+++L +S + +SRQIS LE  +  KLFYR  R +++T+ 
Sbjct: 2   FNWEGVSEFVAVTETESFTAASKRLGISTAQVSRQISALEKRLSAKLFYRTTRKVSVTDV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L+  +  +      P GKL+I   I  G+  L   + +F L YP++
Sbjct: 62  GRVYYQHCRQVLDGLDEAERAISNLQSSPQGKLKITAPITYGEGTLAPLINDFTLQYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  A+  YL     P S
Sbjct: 122 EVNLQLSNQKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLGSRTQYVCASEKYLSTHGVPYS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + EL+ HN +       +   D+ W    +      RI   L+ NS  ++    + G GI
Sbjct: 181 LSELNHHNCL-------QGTLDY-WRFQENGKHRNIRIKGNLRCNSGHALTDAALKGLGI 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LPDY V+   DN  L+ ++         ++  YP     + K++   +F+  + 
Sbjct: 233 VQLPDYYVQEYIDNQQLIPLLTQFTESDDGIWALYPHNRHLSPKVRMLVDFLSEQL 288


>gi|317402162|gb|EFV82753.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 310

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 146/288 (50%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ +  V   GSF  AA+++  ++S ++RQI+ LE + G++L  R  R L++T+ G   
Sbjct: 6   AMQTYVRVVELGSFAAAADKMGQARSVVTRQIAFLEEKYGVRLLNRTTRKLSMTDAGRAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  ++   ++ LQ     PSG+LRI+  +  G   L   + E+LL YPD+ I L
Sbjct: 66  YERVRPILAEVTDLELSLQAEGQAPSGRLRISAPVSFGILHLGPAIAEYLLRYPDVVIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ +D+  D  D A+R+  P+Q SSL+ R L    +   AAP YL++   PL  ++L
Sbjct: 126 DLNDRVVDLVEDGYDVAVRIG-PLQDSSLVARPLAPQQLLVCAAPAYLESHGVPLVPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  + +            W    D      R+ + L+ N+   +    + G G+ L P
Sbjct: 185 KQHRCLHYAYASTGN----EWHFEKDGVSHLVRVNAALRANNGDVLRTAALAGHGVILQP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++V D+     LV +++D +    ++Y  YP     + K+++F   +
Sbjct: 241 EFLVGDDVRAGRLVALLQDYVHTPISMYAAYPHRRFLSPKVRSFVEHL 288


>gi|170728083|ref|YP_001762109.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813430|gb|ACA88014.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 319

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 144/299 (48%), Gaps = 7/299 (2%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+ +  +D + +F  V +SG F+ AAE L  S S +S++++ LE+ +G++L  R  R + 
Sbjct: 20  MTMNKLFDGVVIFTQVVKSGGFSAAAEALGHSTSYVSKEVNKLESRLGVRLLNRTTRSIG 79

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT +G   H+   ++    E     + +  V P G L+I++ +    N L+  L +++L 
Sbjct: 80  LTPEGQAYHQQCLQLVQDAEQAVQLITQHDVSPKGHLKISSPVGFANNYLRPILSQYMLN 139

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP++ ++L L+++ +D+  +  D  IR  + +  SSLI RK+ +   +  A P YL    
Sbjct: 140 YPNVNLELDLNDRRVDVISEGYDLVIRASQNLDESSLICRKIYSCKAYTVATPEYLSKHG 199

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P   QEL KHN + + +L  K    +++     +         +  NS        + G
Sbjct: 200 RPYHPQELAKHNCLCYSNL--KLPTRWHYSDKQGKSFFVDVRQKVLCNSGEMEFAMTLDG 257

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GI  LP++ ++D      L  +     T    V+  YP     + K++AF + +  + 
Sbjct: 258 LGICRLPEFYLQDTLETGKLEILFPQYPTTDIDVFVVYPSRKHLSPKVRAFIDLVVERL 316


>gi|260777888|ref|ZP_05886781.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605901|gb|EEX32186.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 294

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 140/294 (47%), Gaps = 11/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD +  F  VA + SFT AA++L  S + ISR++S LE  + +KL  R  R +++TE G
Sbjct: 3   NWDGVSEFVAVAETQSFTAAAKKLDTSVAQISRRVSALEERLAVKLLNRTTRKVSVTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P G L++   +  G+  L   L +FL  YP + 
Sbjct: 63  QVYYQQCKHLVEGLELAELAVTQMQSTPKGLLKVTAPVTYGETHLAPLLLDFLESYPQVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ ID+     D AIRL + +Q SSL+ ++L +  ++   +P YL    EP ++
Sbjct: 123 LDLNLTNQKIDLIEMGVDVAIRLGR-LQDSSLVAKRLSSRQLYVCGSPDYLARYGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL+ H  +           D+       R         +  NS  +++     G G+  
Sbjct: 182 SELESHQCLV-------GSIDYWRFKESKREKSLRVSGRIHCNSGSALLDAAKRGLGLVQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPDY V+   D+  L+ ++ D       ++  YP+    + K++   +F+  K 
Sbjct: 235 LPDYYVREGLDSGELIEVLSDYRDDREGIWALYPQNRNLSPKVRLLIDFLAEKL 288


>gi|220933474|ref|YP_002512373.1| Carbonate dehydratase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994784|gb|ACL71386.1| Carbonate dehydratase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 305

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 136/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +G F  AA++L +S++ +S+ +  LE  +G +L  R  R ++LTE
Sbjct: 1   MDRLTGMSTFVEVVNAGGFAAAAQRLGVSRAQVSKAVMRLEAHLGTRLLNRTTRRISLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++  +++  +    E S +P G+L ++     G   LQ  + E++  YP+
Sbjct: 61  TGRVYYERCRDILEEIDEIERIAGEQSDRPRGRLTVSAPTSFGILHLQKLIPEYITAYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L L ++ +D+  +  D AIR+ + ++ SSLI R++        A+P YL     P 
Sbjct: 121 VQVSLSLSDRFVDVVAEGFDLAIRIGE-LEDSSLIARRIAPSRRVFCASPEYLARQGTPK 179

Query: 182 SIQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             Q+L  H  + +  DL P          T    +  P    +  ++   +    + G G
Sbjct: 180 VPQDLAIHACLIYANDLKPDTWTLHGPRGTESVKVNGP----VCADNGDILRASALAGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + LLP +IV  +     L +++        +++  YP     + K++ F  F+  +
Sbjct: 236 VTLLPTFIVGPDLASGRLQQVLHAYCPADISIHAVYPSRRYLSAKVRTFVEFLVGR 291


>gi|54303238|ref|YP_133231.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46916666|emb|CAG23431.1| Putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 293

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 147/296 (49%), Gaps = 13/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  V  + SFT A+++L +S + +SRQIS LE  +  KLFYR  R +++T+ 
Sbjct: 6   FNWEGVSEFVAVTETESFTAASKRLGISTAQVSRQISALEKRLSAKLFYRTTRKVSVTDV 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L+  +  +      P GKL+I   I  G+  +   + +F L YPD+
Sbjct: 66  GRVYYQHCRQVLDGLDEAERAISNLQSSPQGKLKITAPITYGEGTVAPLINDFTLQYPDL 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  A+  YL     P S
Sbjct: 126 EVNLQLSNQKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLGSRTQYVCASEKYLSTHGVPYS 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + EL+ HN +       +   D+ W    +      RI   L+ NS  ++    + G GI
Sbjct: 185 LSELNHHNCL-------QGTLDY-WRFQENGKHRNIRIKGNLRCNSGHALTDAALKGLGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LPDY V+   DN  L+ ++         ++  YP     + K++   +F+  + 
Sbjct: 237 VQLPDYYVQEYIDNQQLIPLLTQFTESDDGIWALYPHNRHLSPKVRMLVDFLSEQL 292


>gi|84386521|ref|ZP_00989548.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84378626|gb|EAP95482.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 304

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 132/291 (45%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L++F  +A + + + A ++L LS    S  I  LE  +G +L +R  R ++LTE+
Sbjct: 1   MNIEHLKLFVRLASTHNISQAGQELGLSPPVASIHIGKLEESLGARLVHRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        ++   +E     +   +  P G LRI+     G+  +   LK FL  YPD+
Sbjct: 61  GMAFLPHAKQILLSVEAGVASVGTGNELPKGVLRISAPSSFGRMHVMPALKGFLAKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + + L +  +D+     D AIR  + +Q+SSLI RKL T      A+P YL     P +
Sbjct: 121 SVDISLSDSIVDLVDGGFDVAIRNAE-LQNSSLIARKLSTDKRILCASPEYLAGHGHPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  I    L     +      T +  +   +   ++V+   ++   CV G GIA
Sbjct: 180 PEDLKQHQCINQTGLEGWTFD------TPEGDVTIKKKGAIRVDHGEAVRDVCVDGLGIA 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNF 289
           +   +I        +LV ++ D        ++  YP A     K++ F ++
Sbjct: 234 MCATWIAYKQLAEGSLVEVLPDYPLKDEAAIWAVYPSAQLLAPKVRVFIDY 284


>gi|88801131|ref|ZP_01116676.1| probable transcriptional regulator, LysR family protein [Reinekea
           sp. MED297]
 gi|88776112|gb|EAR07342.1| probable transcriptional regulator, LysR family protein [Reinekea
           sp. MED297]
          Length = 302

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++ F  VA +GSFT A E+L LS   +S+ +S LE ++G++LF R  R + LT+
Sbjct: 1   MDRIDTMKAFVAVAEAGSFTKAGEKLELSNQLVSKYVSQLEEQLGVRLFNRTTRNVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +  +    +   ++  +    +      G+L I+  +      L   +++F   YPD
Sbjct: 61  EGEQCLQHALHILESVDDMENHFGQLQAAAKGQLHISAPVSFATQYLGPLVRDFKKAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  D A+R+   ++ SSLI +++  + +   AAP YL     P 
Sbjct: 121 VGVNLELSDRKVDVVEEGFDVALRIGH-LKDSSLIAKRVAPVRLVLCAAPSYLDQHGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L   + + +  +    +   N L  V R   +   + +  N+   ++   V G G 
Sbjct: 180 HPEDLIGSHFLRYSYMEYAPLS--NPLMKVLRAHSQNNPNGIIANNGDILVSAAVAGEGY 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P +IV +   +  L  I++D       +Y  YP       KL+AF +F+
Sbjct: 238 ILQPTFIVSEPLKSGQLSIILKDYEPEPMGLYAVYPHRKLLAPKLRAFIDFM 289


>gi|329114634|ref|ZP_08243393.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter
           pomorum DM001]
 gi|326696114|gb|EGE47796.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter
           pomorum DM001]
          Length = 298

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 127/291 (43%), Positives = 181/291 (62%), Gaps = 2/291 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQG
Sbjct: 7   DWDKLRVFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEDVLQVPLFHRHARGLILTEQG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             LH+   EV+ KLE TQ  L ES  K +G+LR+ TT   G   L   L  F+   P+I 
Sbjct: 67  ETLHKTVREVFSKLEMTQTLLTESKEKAAGRLRVTTTTGFGNCWLMPRLHRFMADNPEID 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I LIL++ D+D+ M  AD A+R+  P Q   LIQR L    +  +AAP Y++    P S+
Sbjct: 127 ICLILEDNDLDLGMREADVAVRMHAPRQ-PDLIQRHLADFSLPIFAAPLYIEKYGMPKSL 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +E+ +H L+ FG+  P  +   NWLA   R  G  +I+ L+VNS  ++      G GI  
Sbjct: 186 EEIKEHQLVLFGEHHPP-VAHVNWLAQACRNDGSTQIARLEVNSMAAMASAIAAGLGIGS 244

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +P Y  K+ P+LV+I+ ++ TP+   YF YPE L+++ ++  FR+F+  + 
Sbjct: 245 IPTYAAKEFPDLVQILPEITTPTVDAYFVYPEELRSSKRVAVFRDFLMSEL 295


>gi|300114335|ref|YP_003760910.1| lysR family transcriptional regulator [Nitrosococcus watsonii
           C-113]
 gi|299540272|gb|ADJ28589.1| transcriptional regulator, LysR family [Nitrosococcus watsonii
           C-113]
          Length = 307

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 140/300 (46%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V  +GSF+ AA ++  S+S++S+ ++ LE ++G +L  R  R L+LTE G
Sbjct: 3   DLNLMAIFARVVEAGSFSEAARRMETSRSAVSKAVAKLEKDLGARLLNRSTRHLSLTESG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    + +  + E  +  +     +P G LR++ ++  G   +   L +F+  YPDI+
Sbjct: 63  AALVEYAARILEEAEQAEQVVSSLHTEPRGILRVSASVAFGTLHIAPALADFVAQYPDIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + + ++ +D++ +  D  IR+       +L+ RKL  +H    A P Y +    P   
Sbjct: 123 IDMAITDRPVDLAEEGYDMIIRVTGE-PDLNLVARKLAPVHRKLCATPEYFQQHGIPQIP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ + +     +    F      +  I  P    L++N   ++ Q    G GIAL
Sbjct: 182 EDLVNHDCLDYTLSGEQGYWHFT---GPEGEIAVPVSGPLRINDDDALAQAVRGGLGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA---RDW 297
           LP + V  +     L  ++   +     VY  Y        K++ F +F+  +     DW
Sbjct: 239 LPTFTVGKDLQKGRLQAVLSKYLPVKRYVYALYLPTRHLAAKIRVFIDFLLARFGPEPDW 298


>gi|148261425|ref|YP_001235552.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326404905|ref|YP_004284987.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|146403106|gb|ABQ31633.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
 gi|325051767|dbj|BAJ82105.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 300

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 130/294 (44%), Positives = 184/294 (62%), Gaps = 4/294 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLRVF+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTE
Sbjct: 5   HMDWDKLRVFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALAVPLFHRHARGLILTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG +L+R   +V+ KL  T+  L ES  +P+G+L++ TT   G   L   L+ FL  YPD
Sbjct: 65  QGEQLNRTVRDVFAKLAMTEALLAESKERPAGRLKVTTTHSFGVVWLAPRLRAFLKQYPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-EP 180
           + I L+LD+ D+D++M  AD AIR+  P Q   L+QR L  I    +A+  YL+     P
Sbjct: 125 VSISLLLDDVDLDLAMREADVAIRMHPPRQ-PDLVQRSLGEIRWQIFASEDYLREVGKTP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGS 239
              ++LD H LI FGD  P  + D NW+A++ RP G   R   L+VNS  +++     G 
Sbjct: 184 ERPEDLDDHRLILFGDRKPP-VADVNWIASIGRPDGAAQRAGALEVNSLQAMLVAIRSGI 242

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  +PDY+ +D   LVRI+ +V  P   +YF YPE L+N+ ++  FR+F+  +
Sbjct: 243 GIGAVPDYLTEDTTGLVRILPEVKAPKIDMYFVYPEELRNSKRVSVFRDFLVTE 296


>gi|330447802|ref|ZP_08311450.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491993|dbj|GAA05947.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 301

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 143/297 (48%), Gaps = 8/297 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +FY +   GSF+ AAE + L++S +S++I+ LE  +G++L YR  R L LTE G  
Sbjct: 5   NNLLLFYHLIDKGSFSKAAEHIGLTKSVVSKRITALEQALGVQLIYRTTRKLALTEAGDV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    EVY+ ++  +  +       +GK+RI      G+ +L   +  F   YPDI I+
Sbjct: 65  FYHHAREVYNAVQNAEDAMSGLGESLTGKIRITVPTISGELILPEAIAAFSQQYPDIHIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+  +  D AIR    +  SS I R+ V        +P YL++   P    +
Sbjct: 125 MDLDNRFVDLVQEGFDIAIRTGA-MPDSSFIARQFVQARWVICGSPSYLESHGVPTQPND 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KHN + +        E   WL      I   ++      N+  ++    + G G+  +
Sbjct: 184 LTKHNCLGYSFQETGANE---WLIEDKLGIHTVKVKGNFTTNNASALRGAAIHGQGLVYV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P  +V ++    +L+ ++++ +  S  +Y  YP   +   K+K F   ++   + ++
Sbjct: 241 PKVLVAEDLHSGSLIEVLDNYVAKSLGIYAVYPYTKQQPMKVKLFIEHLYQYYQKYR 297


>gi|85715967|ref|ZP_01046944.1| Transcriptional regulatory protein, LysR family protein
           [Nitrobacter sp. Nb-311A]
 gi|85697165|gb|EAQ35046.1| Transcriptional regulatory protein, LysR family protein
           [Nitrobacter sp. Nb-311A]
          Length = 297

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 129/296 (43%), Positives = 181/296 (61%), Gaps = 2/296 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+VF+  A +GSFTHA EQL LSQS++SRQ+  LE E+ + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVGALEQELSVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   EV+ +L+  + +L +S  +PSG L++ TT  +G N L   L EF  LYP+I
Sbjct: 61  GDLLFRTAHEVFMQLKAARAQLADSRERPSGDLKVTTTPGVGINWLIPRLGEFTSLYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L ++++D+SM  AD AIR+ KP Q   LIQRKL  I  HAY +  Y+K    P +
Sbjct: 121 RISLLLTDEELDLSMREADIAIRIYKPTQ-PDLIQRKLFAICFHAYCSTEYVKRFGTPRT 179

Query: 183 IQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++EL  H +I   +      +++ NWL    R    P      VN+ L +   C  G GI
Sbjct: 180 LEELSGHRIILLNETQASPHLQNRNWLIEAARSRSGPHEPYFTVNNILGLFSACQQGLGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LPDY+V  N  LV++  +  +     YF YPE LK+  +++AFR+F+  KA+ W
Sbjct: 240 AALPDYLVGGNNLLVQLFSESDSIQLDTYFVYPEELKSVARVQAFRDFVVSKAQRW 295


>gi|157960095|ref|YP_001500129.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845095|gb|ABV85594.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 289

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 147/293 (50%), Gaps = 11/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT A+++L +S + +SRQIS LET +  KLF+R  R +++TE 
Sbjct: 2   FNWEGVSEFVAVAEAESFTKASQRLGISTAQVSRQISALETRLASKLFHRTTRKVSVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +      P G L+I   +  G+  +   + +F  LYP++
Sbjct: 62  GRVYYQHCRQVLDGLEEAERAITNLQTTPRGLLKITAPVTYGEKTIAPLINDFASLYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D+  +  D AIRL   ++ SS++ +KL +   +  A+P+YL     P S
Sbjct: 122 EVKLNLSNQKLDLVDEGYDLAIRLGH-LEDSSMMAKKLSSRTQYVCASPNYLATYGLPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ELD+HN +           D+       +         L  NS  +++   + G GI 
Sbjct: 181 LSELDQHNCLI-------GTMDYWRFQESGKTRNVRVKGSLSCNSGHALVDAAIKGIGIV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPDY V    ++  L  ++E    P   ++  YP+    + K++   +F+  
Sbjct: 234 QLPDYYVLPFIESGELTPLLEQNRQPEEGIWALYPQNRHLSPKVRMLLDFLSE 286


>gi|269104823|ref|ZP_06157519.1| transcriptional regulators LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161463|gb|EEZ39960.1| transcriptional regulators LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 300

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 138/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V ++GSF+    +L+ SQ++IS++++ LE E+G+KL  R++R L LT 
Sbjct: 1   MDKLGAMRAFVRVVQTGSFSATGRELNTSQTAISKKVAALEKEIGVKLLTRNSRELALTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +  +++  +   +E    P G LRI+  I   + +L   L EF  LYP+
Sbjct: 61  SGTEYFNKCVAILGEIDEAEASAREDVAVPKGVLRISAPIAFSRLVLASLLSEFNSLYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L+  ++ +D+     D AIR R  ++ S+LI R L    +  +A+P YL     P 
Sbjct: 121 ISIDLLASDQHVDLISSGVDVAIRARN-LEDSTLIARHLFDNVLMLFASPDYLAKNGTPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  HN + +  L       F+      +          + ++   ++   + G GI
Sbjct: 180 KPEDLLDHNCLVYSRLHSVNTWSFS---CKQQEHLISVHGSFRCDNGDVLLDAALAGLGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             LP ++V    ++  L+ ++ D           Y +      K++ F +F+  K
Sbjct: 237 THLPKWMVSRYVESGELIPLLVDYEGQKLPFNAVYLQNRYVPLKVRCFVDFLKQK 291


>gi|159042679|ref|YP_001531473.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157910439|gb|ABV91872.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 302

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +     +P+G LRI+   D G   L   L  FL  +P+
Sbjct: 61  IGLAYYDRARHVLNDAGEADAMVNAMQSEPNGLLRISVATDFGVKHLSPVLAGFLHQFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI ++L+N+ +++  +  D A+R+   ++ S+L  RKL T      AAP YL+    P 
Sbjct: 121 IQINMVLNNRYVELISEGFDLALRVGD-LEDSTLRARKLATTSKRMIAAPSYLEKFGHPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L  H L+ + +     +      +   R +       L VN   S++     G GI
Sbjct: 180 RIDDLSDHKLLHYSNQSSGNLWKITAPSGEKRQVRTG--GWLTVNDGQSLLNAAKTGLGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP ++ +D     ++V ++ D+      +Y  YP       K++AF +F+  +
Sbjct: 238 AYLPSFLFEDALGRGDVVEVLPDLPYDDLGIYAVYPPGRFTQPKVRAFIDFLVRE 292


>gi|156978116|ref|YP_001449022.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156529710|gb|ABU74795.1| hypothetical protein VIBHAR_06921 [Vibrio harveyi ATCC BAA-1116]
          Length = 289

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 141/292 (48%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAETNSFTGAANKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G L++   +  G+  L   L +F+  YP + 
Sbjct: 63  QLYYQQCKNLVEGLELAELAVTQMQAEPKGLLKVTAPVTYGEMNLAPLLHQFIEKYPQVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ +D+     D AIRL + +Q SSLI ++L +  ++  A+P YL    EP ++
Sbjct: 123 LDLNLTNQKLDLIEQGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPAYLDRSGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +           D+       R         ++ NS  +++     G G+  
Sbjct: 182 SELSHHQCLV-------GTADYWHFKEQKREKSLRVSGRIKCNSGFALVDAAKRGLGLVQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPDY V+   DN  LV ++ D       ++  YP+    + K++   +F+  
Sbjct: 235 LPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQNRNLSPKVRLLIDFLAE 286


>gi|330721477|gb|EGG99525.1| Transcriptional regulator2C LysR family [gamma proteobacterium
           IMCC2047]
          Length = 297

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 145/292 (49%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD    F  V   GSF+ AA+ L++S+S +SR ++ LE  +G +L  R  R +TLTE G 
Sbjct: 4   WDGFEAFVHVVDQGSFSKAAQHLNVSKSFVSRHVTDLENRLGAQLLNRTTRTITLTEVGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E+ + LE  +  + +   +P G L++      G+  +     +F+ L P++ I
Sbjct: 64  SFYTRCREILNGLEEAEHAVFDMQERPRGTLKMTAAGAFGETYVVPIAVDFMKLNPEVNI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   N++ID+  +  D AIR    ++ SSLI R++ T  +H   +P Y +    P SI 
Sbjct: 124 DISFTNRNIDLVAEGYDLAIRFG-VLKDSSLIARRIATRQLHVVGSPDYFQQFGLPQSID 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L +HN +         +  + +  T ++   E +I    + N+  ++++    G G++ 
Sbjct: 183 QLKQHNCLA------GALNIWRFSETGNQGHTEVKIEGNWRSNNARALLEAARKGLGLSQ 236

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +P   V+D+     L+ ++++       V+  YP +   + K+++F +F+  
Sbjct: 237 MPAAYVQDDIESGALISVLDEYQPRDLGVWAVYPSSRHLSTKVRSFIDFLVE 288


>gi|254507200|ref|ZP_05119337.1| transcriptional regulator [Vibrio parahaemolyticus 16]
 gi|219549910|gb|EED26898.1| transcriptional regulator [Vibrio parahaemolyticus 16]
          Length = 290

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 143/296 (48%), Gaps = 11/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA++L  S + +SR++S LE  + +KLF R  R ++LTE G
Sbjct: 3   NWEGVSEFVGVAETQSFTAAAKKLDTSVAQVSRRVSSLEERLAVKLFNRTTRRVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++   ++   LE  ++ + +    P G L++   +  G+  L   L +FL  YP + 
Sbjct: 63  QLYYQQCKQLVEGLELAELAVTQMQSTPKGLLKVTAPVTYGEQQLAPLLHQFLEKYPQVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ +D+     D AIRL + +Q SSL+ ++L +  ++  A+  YL    EP ++
Sbjct: 123 LDLNLTNQKLDLIEMGVDVAIRLGR-LQDSSLVAKRLSSRQLYVCASKEYLDRFGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +           D+                 +  NS  S++   + G G+  
Sbjct: 182 SELSNHQCLV-------GSVDYWRFKDSKGEKSIRVSGRIHCNSGYSLLDAAIRGLGLVQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LPDY V+   D  +L+ ++ D       ++  YP+    + K++   +F+  K +D
Sbjct: 235 LPDYYVQSALDTGSLIEVLSDYRDEREGIWALYPQNRNLSPKVRLLIDFLAEKLKD 290


>gi|149376176|ref|ZP_01893941.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
 gi|149359581|gb|EDM48040.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
          Length = 296

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 147/291 (50%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA +G+FT AA++L +S + +SRQIS LET +  +LFYR  R ++ TE G 
Sbjct: 4   WEGVNEFVAVAETGNFTRAAKRLGISTAQVSRQISALETRLSTRLFYRTTRRVSATEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   +V   LE  +  +    + P G+L++   +  G+  +   L +F++ YP++++
Sbjct: 64  IYYQHCRQVLEALEEAERSITNMQLVPRGRLKLTAPVTYGEKSIAPLLNDFVMRYPELEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L N+ +D+  +  D A+RL K ++ S+L+ R+L +  ++  A+P YL     P S+ 
Sbjct: 124 EVNLTNQTLDLVAEGYDLAVRLGK-LEDSTLMARRLASRTLYVCASPAYLSARGTPHSLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  HN +           D+       +P        ++ +S  +++   + G GI  L
Sbjct: 183 ELAHHNCLL-------GNLDYWRFQEAGQPRNVRVSGNIRCDSGRALLDAALKGIGIVQL 235

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY VK   D+  LV ++         ++  YP     + K++   +F   
Sbjct: 236 PDYYVKRALDSGALVPLLTHYQEDDDGIWAVYPHNRHLSPKVRMLLDFFVE 286


>gi|323495787|ref|ZP_08100857.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323319254|gb|EGA72195.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 289

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 146/295 (49%), Gaps = 13/295 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA++L  S + +SR+IS LE  + +KLF R  R ++LTE G
Sbjct: 3   NWEGVSEFVGVAETQSFTAAAKKLDTSVAQVSRRISSLEERLAVKLFNRTTRRVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++   ++   LE  ++ + +    P G L++   +  G+  L   L +FL  YP + 
Sbjct: 63  QLYYQQCKQLVEGLELAELAVTQMQSTPKGLLKVTAPVTFGEQQLAPLLHQFLERYPQVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L N+ +D+     D AIRL + +Q SSLI ++L +  +   A+P YL+   EP ++
Sbjct: 123 LDLMLTNQKLDLIEMGVDVAIRLGR-LQDSSLIAKRLSSRQLFVCASPSYLEQYGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
            EL  H  +              W     +     R+S  +  NS  +++   + G G+ 
Sbjct: 182 SELSHHQCLVGSVDY--------WRFRDSKSEKSLRVSGRIHCNSGYAVLDAAIRGLGLV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LPDY V+   ++  LV ++ +       ++  YP+    + K++   +++  + 
Sbjct: 234 QLPDYYVQPALESGELVEVLSNYRDEREGIWALYPQNRNLSPKVRLLIDYLAEQL 288


>gi|294678954|ref|YP_003579569.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294477774|gb|ADE87162.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB
           1003]
          Length = 301

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 139/298 (46%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +    V PSG LRI+   D G NLL   L +FL  YP+
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQVAPSGLLRISVATDFGVNLLSPVLGDFLQEYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++L+N+ +++  +  D AIR+ + ++ S+L  RKL        A+P Y +    P 
Sbjct: 121 VTVNMVLNNRYVELISEGFDMAIRVGE-LEDSTLKARKLTETAKRMIASPRYFEKYGRPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L+ H L+ + +     +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNDHKLLHYSNQSNGNVWKITAPSGERRQVRS--AGWLTVNDGQSLLHAAIAGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP ++  D      +   M D+   +  +Y  YP       K++AF +F+     D
Sbjct: 238 AYLPSFLYADAMKKGQVEEAMPDLPMETLGIYAVYPPGRFTQPKVRAFIDFLAETFAD 295


>gi|261251307|ref|ZP_05943881.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260938180|gb|EEX94168.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 315

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 144/294 (48%), Gaps = 11/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KLF R  R ++LTE G
Sbjct: 29  NWEGVSEFVGVAETQSFTAAANKLDTSVAQISRRVSALEERLAVKLFNRTTRKVSLTEAG 88

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P G L++   +  G+  L   L +FL LYP + 
Sbjct: 89  QLYYQQCKHLVEGLELAELAVTQMQSTPKGLLKVTAPVTYGEQHLAPLLHQFLELYPQVN 148

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L N+ +D+     D AIRL + +Q SSLI ++L +  ++  A+P YL    EP ++
Sbjct: 149 LDLMLTNQKLDLIELGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPDYLDRFGEPHTL 207

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +         +E + +  T            +  NS  +++     G G+A 
Sbjct: 208 SELSNHQCLV------GSVEYWRFRDTKGEKSMRVS-GRIHCNSGYALLDAAKRGLGLAQ 260

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPD+ V+   D   LV ++ +       ++  YP+    + K++   +F+  K 
Sbjct: 261 LPDHYVQEALDTGELVEVLTEYRDEREGIWALYPQNRNLSPKVRLLIDFLAEKL 314


>gi|261364503|ref|ZP_05977386.1| transcriptional regulator, LysR family [Neisseria mucosa ATCC
           25996]
 gi|288567439|gb|EFC88999.1| transcriptional regulator, LysR family [Neisseria mucosa ATCC
           25996]
          Length = 299

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 7/294 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +  + +  F    +SGSFT AA+QL L++S+I ++I  LE  + ++L  R+ R L  
Sbjct: 1   MELNNLNDMTAFVASVKSGSFTAAAKQLGLTRSTIGKRIVRLEARLNVRLLQRNTRNLAP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G   +   + V  +LE  +  L + S++P G+L+I+  + LG+ +L   L +FL  Y
Sbjct: 61  TDEGRLFYERCTAVLEELENAEQCLAQRSIEPQGRLKISAPLVLGKTILPPLLADFLHRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P   ++L L +   D+  D  D A+R   P Q  SLI R + +  M   AAP YL     
Sbjct: 121 PQTSVELSLTDDYADLISDGYDLALRNGNPPQFDSLIARTVGSQQMLTCAAPGYLVQHGT 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S  +L  H  + F          F       +            ++  ++++  +   
Sbjct: 181 PQSPDDLAHHQCLHFLHGGRVSRWRFQ---QKGKETTFQGSGRFSADNGEALLELALSAF 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP Y+V+   D+ +L  ++ D  +    V   YP   + + K++A  + +
Sbjct: 238 GIVQLPHYLVQTALDSGSLKSVLNDFQSKPVPVMAVYPSRKQLSPKVRALVDMM 291


>gi|77165387|ref|YP_343912.1| LysR family transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|254433400|ref|ZP_05046908.1| LysR substrate binding domain protein [Nitrosococcus oceani AFC27]
 gi|76883701|gb|ABA58382.1| transcriptional regulator, LysR family [Nitrosococcus oceani ATCC
           19707]
 gi|207089733|gb|EDZ67004.1| LysR substrate binding domain protein [Nitrosococcus oceani AFC27]
          Length = 307

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 140/300 (46%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V  +GSF+ AA ++  S+S++S+ ++ LE  +G +L  R  R L+LTE G
Sbjct: 3   DLNLMAIFARVVEAGSFSEAARRMETSRSAVSKAVAKLEKNLGARLLNRSTRHLSLTESG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    + +  + E  +  +     +P G LR++ ++  G   +   L +F+  YPDI+
Sbjct: 63  AALVEYAARILEEAEQAEQVVSSLHAEPRGMLRVSASVAFGTLHIAPALADFVARYPDIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + + ++ +D++ +  D  IR+       +L+ RKL  ++    A P Y +    P   
Sbjct: 123 IDMAITDRPVDLAEEGYDMIIRVTGE-PDLNLVARKLAPVYRKLCATPEYFQQHGIPQIP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ + +     +    F      +  I  P    L++N   ++ Q    G GIAL
Sbjct: 182 EDLVNHDCLDYTLSGEQGYWHFT---GPEGEIAVPVSGPLRINDDDALAQAVRGGLGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA---RDW 297
           LP + V  +     L  ++ + +     VY  Y        K++ F +F+  +     DW
Sbjct: 239 LPTFTVGKDLQEGRLQAVLSEYLPVKRYVYALYLPTRHLAAKIRVFIDFLLTRFGPEPDW 298


>gi|163801538|ref|ZP_02195437.1| putative transcriptional regulator [Vibrio sp. AND4]
 gi|159175027|gb|EDP59827.1| putative transcriptional regulator [Vibrio sp. AND4]
          Length = 289

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 143/292 (48%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAETNSFTGAANKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G L++   +  G+  L   L +F+  YP + 
Sbjct: 63  QLYYQQCKHLVEGLELAELAVTQMQAEPKGILKVTAPVTYGEINLSPLLHQFIEKYPQVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ +D+     D AIRL + +Q SSLI ++L +  ++  A+P YL+   EP ++
Sbjct: 123 LDLNLTNQKLDLIEQGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPAYLERSGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +           D+       R         ++ NS  +++     G G+  
Sbjct: 182 SELSHHQCLV-------GTADYWHFKEQKREKSLRVSGRIKCNSGFALVDAAKRGLGLVQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPDY V+   DN +LV ++ D       ++  YP+    + K++   +F+  
Sbjct: 235 LPDYYVQEALDNGDLVEVLTDYRDDREGIWALYPQNRNLSPKVRLLIDFLAE 286


>gi|212634907|ref|YP_002311432.1| regulatory protein LysR:LysR substrate-binding [Shewanella
           piezotolerans WP3]
 gi|212556391|gb|ACJ28845.1| Regulatory protein, LysR:LysR, substrate-binding [Shewanella
           piezotolerans WP3]
          Length = 289

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 148/295 (50%), Gaps = 11/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT AA +L +S + +SRQ+S LET +  KLF+R  R +++TE 
Sbjct: 2   FNWEGVSEFVAVAETESFTKAAGRLGISTAQVSRQVSTLETRLAAKLFHRTTRKVSVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L+  +  +      P G L+I   +  G++++   + +F+  YP++
Sbjct: 62  GRIYYQHCRQVLDGLDEAERAITNLQTTPRGLLKITAPVTYGESMIAPLINDFITQYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q+ L N  +D+  +  D AIRL + ++ SS++ ++L +   H  A+P Y+     P +
Sbjct: 122 EVQINLSNLKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLGSRTQHVCASPSYVSTYGLPHT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL++HN +           D+       +         L  NS  +++   + G GI 
Sbjct: 181 LSELEQHNCLI-------GTLDYWRFQEKGKARNVRVKGNLSCNSGHALVDAAIKGLGII 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LPDY V    ++  L+ ++E+       ++  YP     + K++   +F+  K 
Sbjct: 234 QLPDYYVNSFIESGELMSLLENNRQADEGIWALYPHNRHLSPKVRMLLDFLGEKL 288


>gi|299769346|ref|YP_003731372.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298699434|gb|ADI89999.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 342

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 145/296 (48%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  ++VF  V  + SF+ AA+ L L ++S++  I GLE  + ++L  R  R L+LT
Sbjct: 1   MDL-FHAMKVFNKVVETNSFSLAADSLGLPRASVTTTIQGLEKHLQVRLLNRTTRKLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  +  T+ +   +E  +    +S   P G+LRI     +G+ +L   L +F   YP
Sbjct: 60  PDGAVYYERTTRILADVEDVESTFHDSERGPRGRLRIDVKASIGRLILIPMLCDFHSKYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + + + ++ +D+  D  DC IR+ + ++ SSL+ R++ TI     AAP YL    EP
Sbjct: 120 DIDLVIGMSDRPVDLVQDAVDCVIRIGQ-LKDSSLVARRIGTIQCVTVAAPRYLAEHGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            +I +L KH ++ +     +   + +W   VD  I    +   + VN   S +   V G 
Sbjct: 179 KTINDLQKHQVVHY--FNSRTGRNIDWDFMVDGEIHSVGVKGRVSVNDGDSYIDLAVQGF 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+   P Y+V    ++  L  ++ + +     +   Y +    + K++ F +++  
Sbjct: 237 GLIQCPYYMVAKHLESGALREVLTEWLPAPMPISVVYLQNRHLSPKVRVFVDWVAE 292


>gi|307725778|ref|YP_003908991.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586303|gb|ADN59700.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 296

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 141/291 (48%), Gaps = 8/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D +R+F     + +FT AA ++ LS+  +SR++  LE  +G+ L  R+ R L +TE 
Sbjct: 1   MQLDDMRIFVATVDAHNFTAAARRMSLSKQFVSRRVMALEEALGVPLLVRNTRKLAVTEL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++E  +  +      P G LR++  +  G   L   + +FL  + D+
Sbjct: 61  GQEFYERARRILSEVEEAEQAMSLRRAGPRGLLRVSAPMSFGMTHLSPLVADFLREHRDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +  + L ++ +D+  +  D A+R+   +  S+LI +KLV ++  A  +P YL+   +P +
Sbjct: 121 RFDMELSDRTVDVVGEGFDMAVRIG-VLPDSTLIAQKLVDVNFVACCSPGYLRRRGKPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H+ + +G       E     A             L+ N+   I    V G GI 
Sbjct: 180 PADLAGHSCLLYGHGGVVTWE----FAVNGAMKSFEVHGPLRANNGDLIRDAAVAGLGIV 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP +IV +   +  LV +++D +  S  VY  YP+  +++  ++AF +F+
Sbjct: 236 RLPHFIVANALRDGQLVTVLDDFMPGSIGVYAVYPQHRQSSLTIRAFVDFL 286


>gi|269959553|ref|ZP_06173935.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835740|gb|EEZ89817.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 289

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 141/292 (48%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAETNSFTGAANKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G L++   +  G+  L   L +F+  YP + 
Sbjct: 63  QLYYQQCKHLVEGLELAELAVTQMQAEPKGLLKVTAPVTYGEMNLAPLLHQFIEKYPQVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ +D+     D AIRL + +Q SSLI ++L +  ++  A+P YL    EP ++
Sbjct: 123 LDLNLTNQKLDLIEQGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPAYLDRSGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +           D+       R         ++ NS  +++     G G+  
Sbjct: 182 SELSHHQCLV-------GTADYWHFKEQKREKSLRVSGRIKCNSGFALVDAAKRGLGLVQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPDY V+   DN  LV ++ D       ++  YP+    + K++   +F+  
Sbjct: 235 LPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQNRNLSPKVRLLIDFLAE 286


>gi|149204814|ref|ZP_01881777.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
 gi|149141783|gb|EDM29836.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
          Length = 301

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 111/288 (38%), Positives = 173/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA EQLHLSQS++SRQ+  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGEQLHLSQSAVSRQVRALEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATRAMMKRLDAATARIRDSEEEVFGDLRVTTTTGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+++HM  YA   YL    EP S
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMSVHMCLYATQSYLDAHGEPSS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++++  H LI      P+  +       V+  +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 LEDMSAHRLIC---QNPRSAQVGAGAMLVNELMTNDISSLLTVNNYFGVLQGVLNDLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+++D P LVR++ +V +    V+  YPE L+++ ++ AFR+F+
Sbjct: 237 VLPDYLIRDFPQLVRVLPEVQSVEVPVFLAYPEELRHSKRIAAFRDFV 284


>gi|127513220|ref|YP_001094417.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126638515|gb|ABO24158.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 299

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 140/290 (48%), Gaps = 7/290 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GSF+ AA +L +++S++S++IS LE  +G+KL  R  R L LT+ G + +  
Sbjct: 9   LFVSVVELGSFSEAARRLGINKSAVSKRISALEQALGVKLIQRTTRRLHLTDAGRQYYEY 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +    ++  Q  L        G L+++     GQ  +   L EF   YP I +++ LD
Sbjct: 69  VHQAAALMQQAQDALASQQGAVQGSLKVSLPNVFGQRHIAPLLSEFSRQYPTINLEVSLD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R+   +  SSL+  KL   H    A+P YL +   P S+ +L  H
Sbjct: 129 DRVVDLLKEGLDMVVRIGD-LPDSSLVAVKLAPCHSLLCASPDYLAHQSHPRSLADLRGH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + +          F     V R   +PR   ++VN+   I +  + G GIAL+P Y+V
Sbjct: 188 NCLFYSYFRGGLEWSFERRGEVSR--IKPR-GNIKVNNSEVIRRLLLDGMGIALMPRYLV 244

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++      LV ++ D   P+  +Y   PE      +L+ F +F+     +
Sbjct: 245 EEELAAGTLVPVLSDYQAPTHGIYALTPERQHMPARLRVFIDFLKQALAE 294


>gi|153832732|ref|ZP_01985399.1| transcriptional regulator [Vibrio harveyi HY01]
 gi|148871077|gb|EDL69961.1| transcriptional regulator [Vibrio harveyi HY01]
          Length = 289

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 141/292 (48%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAETNSFTGAANKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G L++   +  G+  L   L  F+  YP + 
Sbjct: 63  QLYYQQCKHLVEGLELAELAVTQMQAEPKGLLKVTAPVTYGEMNLAPLLHRFIEKYPQVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N+ +D+     D AIRL + +Q SSLI ++L +  ++  A+P YL    EP ++
Sbjct: 123 LELNLTNQKLDLIEQGVDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPAYLDRSGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +           D+       R         ++ NS  +++     G G+  
Sbjct: 182 SELSHHQCLV-------GTADYWHFKEQKREKSLRVSGRIKCNSGFALVDAAKRGLGLVQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPDY V+   DN  LV ++ D       ++  YP+    + K++   +F+  
Sbjct: 235 LPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQNRNLSPKVRLLIDFLAE 286


>gi|24376372|ref|NP_720480.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24345286|gb|AAN53080.1|AE015922_9 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 289

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 147/295 (49%), Gaps = 11/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT AA+QL +S + +SRQ+S LET +  KLF+R  R ++++E 
Sbjct: 2   FNWEGVSEFVAVAEAESFTKAAKQLGISTAQVSRQVSALETRMATKLFHRTTRKVSVSEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +      P G L+I   +  G+  L   + +F+  YP++
Sbjct: 62  GRIYYQHCRQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGEKTLVPLVNDFIAKYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L N+ +D+  D  D AIRL + ++ SS++ ++L +   +  A+P Y+     P S
Sbjct: 122 EVKINLTNQKVDLIDDGYDLAIRLGQ-LKDSSIMAKRLGSRTQYVCASPDYVSTFGIPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL++HN +           D+       +         L  NS  +++   + G GI 
Sbjct: 181 LSELEQHNCLL-------GTLDYWRFQENGKTRNVRVKGNLTCNSGYALVDAAIKGIGII 233

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LP+Y V    ++  LV ++E    P   ++  YP     + K++   +++    
Sbjct: 234 QLPEYYVLPFLEDGQLVPLLEQNRQPKEGIWALYPHNRHLSPKVRMLLDYLSEAL 288


>gi|157964020|ref|YP_001504054.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157849020|gb|ABV89519.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 304

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 84/297 (28%), Positives = 146/297 (49%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ + +F  VA S  F+ AA  L +S+S++S++I+ LE ++G +LFYR  R L+LTE
Sbjct: 1   MDTFNAIPIFVAVADSAGFSSAARVLGISKSAVSKRITQLEQQLGARLFYRSTRNLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + ++  S+     +  +  + E   +P G L+I   + +GQ  L   + EF+  YP+
Sbjct: 61  AGERYYQYASQANRAAKQAEDAVSELQGEPKGLLKIQVPMTIGQMHLASLIPEFIERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L++D+ +I++     D AIR    +  S+LI R LV +H     +P + +  R+ L
Sbjct: 121 IQIDLVMDDDEINLIEQGFDLAIR-ADDLVDSNLIARLLVPLHSVVCVSPSFYQKHRQQL 179

Query: 182 S-IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +   +L   N I +       +  FN  A              +VN+  ++    + G G
Sbjct: 180 TSPSQLADLNCILYSYSKNADVWQFN--ANNGDEFKVKVTGNYRVNNSAALRDAVIAGMG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            A LP ++        +LV I +D   PS  +   YPE      K++ F +++  K 
Sbjct: 238 AARLPTFVAGAAIQRGDLVAIFKDYTMPSKKLNAIYPERHYLPAKVRVFLDYVIEKL 294


>gi|126174633|ref|YP_001050782.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125997838|gb|ABN61913.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 292

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 147/293 (50%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELSQHNCLIGNHNYWRFVEN-------GRERNIKVRGNLNCNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PDY ++D+     L+ +++        ++  YP+    + K++   +++  K 
Sbjct: 236 PDYYIEDDINAGRLLSLLDGHREAKEGIWAIYPQNRHLSAKIRVLVDYLAEKL 288


>gi|157377364|ref|YP_001475964.1| carbonate dehydratase [Shewanella sediminis HAW-EB3]
 gi|157319738|gb|ABV38836.1| Carbonate dehydratase [Shewanella sediminis HAW-EB3]
          Length = 289

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 147/295 (49%), Gaps = 11/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT AA++L +S + +SRQ+S LET +  KLF+R  R +++TE 
Sbjct: 2   FNWEGVSEFVAVAEAESFTKAAKRLGISTAQVSRQVSALETRMATKLFHRTTRKVSVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +      P G L+I   +  G+  L   + +F+  YP++
Sbjct: 62  GRIYYQHCRQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGERTLAPLVNDFIAKYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  A+P Y+     P S
Sbjct: 122 EVKVSLTNQKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLGSRTQYVCASPGYVSTFGIPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL++HN +           D+       +         L  NS  +++   + G GI 
Sbjct: 181 LSELEQHNCLL-------GTLDYWRFQENGKTRNVRVKGNLSCNSGHALVDAAIKGIGII 233

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LPDY V    ++  L+ ++E    P   ++  YP     + K++   +++    
Sbjct: 234 QLPDYYVLPYLEDGQLIPLLEQNRQPDEGIWALYPHNRHLSPKVRMLLDYLSEAL 288


>gi|254250388|ref|ZP_04943707.1| hypothetical protein BCPG_05280 [Burkholderia cenocepacia PC184]
 gi|124879522|gb|EAY66878.1| hypothetical protein BCPG_05280 [Burkholderia cenocepacia PC184]
          Length = 308

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 143/297 (48%), Gaps = 10/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE
Sbjct: 3   NMEINDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P 
Sbjct: 63  SGQEFYVRAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P 
Sbjct: 123 VRLNLDLTDRRVDLIGEGFDLVLRIGS-LEDSTLIARPLGAWRMIACASPAYLKRHGTPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L  H  + +G           W   VD  +    +   L  N+   +    + G G
Sbjct: 182 TPADLAGHTCVLYGRE-----RRVGWEFRVDGAVRTFDVQGPLVANNGEVVRDAAIAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IALLP +IV    D+  LV +++  + P  T+   +P+  +    L+ F  F+  + 
Sbjct: 237 IALLPHFIVGAALDSGALVPVLDAYVPPPITLNAVFPQHREGFVTLRTFIGFLAERL 293


>gi|304409008|ref|ZP_07390629.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307303011|ref|ZP_07582766.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304352829|gb|EFM17226.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306913371|gb|EFN43793.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 292

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 147/293 (50%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELSQHNCLIGNHNYWRFVEN-------GRERNIKVRGNLNCNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PDY ++D+     L+ +++        ++  YP+    + K++   +++  K 
Sbjct: 236 PDYYIEDDINAGRLLSLLDGHREAKEGIWALYPQNRHLSAKIRVLVDYLAEKL 288


>gi|300024549|ref|YP_003757160.1| LysR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526370|gb|ADJ24839.1| transcriptional regulator, LysR family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 305

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 139/295 (47%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +  F  V  SGS+  AA +L+L++S++S+ +  LE  +G +L  R  R +T TE
Sbjct: 1   MDKLEAMNAFAKVVASGSYAEAARRLNLTRSAVSKAVMELEQALGARLLDRTTRRVTPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +  +++ T+ ++     +P G L++   +  G   L   + +F++ Y D
Sbjct: 61  AGLAYYERCLAILAQVDETEAQISRLHDEPKGVLKVNAPMSFGTLYLGDAVADFMIRYSD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L ++ ID   +  D  +R+   +  SSLI R++    +   A+P YLK    P 
Sbjct: 121 LKVELTLTDRFIDPLEEGVDVTVRIGAMV-DSSLIARRISPARIVLVASPDYLKAHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L +H  +++G +          L    +P+     +CL  N+   + +  + G GI
Sbjct: 180 SPSDLAEHRCLSYGHMTSMQRWH---LTDKGKPVSVAIGACLSSNNGDVLREAALKGIGI 236

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ALLP +I   +     L  ++ +      T++  Y        K + F +F+  +
Sbjct: 237 ALLPTFIAGKDIAAKRLQIVLPENQPDDLTIHALYAPNRYLAAKTRVFIDFLVDR 291


>gi|77460131|ref|YP_349638.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384134|gb|ABA75647.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 302

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 148/293 (50%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V   GSF+  A +LH +Q +IS+ +  LE E+G KL  R  R L+LT+
Sbjct: 1   MDKLNAMAIFVRVVERGSFSAVARELHTTQPTISKVLRALENELGGKLIARSTRKLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     +   ++  +   Q      +G LRI +++  G+  +   L EFL  +P 
Sbjct: 61  EGQRYYNECRNILAAVDAAEHSFQSGRETVAGPLRIGSSVSFGRLHIASRLAEFLQRFPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L L ++++D+  +  D ++R+ + +  S +I R++ T H    A P YL+    P 
Sbjct: 121 VQVDLQLSDQNLDLVSEGLDVSLRIGE-LNDSGMIARRIGTTHRLTVATPDYLRRHGHPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S Q+L +HN + F  L  + +    W    D    + RI    Q N+  +I +  + G G
Sbjct: 180 SPQDLAQHNCLQFNLLSTQNL----WTYEKDGQHHDVRIQGNAQSNNSEAIREMVLGGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++L P ++  ++     ++ +++D  T S  ++   P   + + ++ AF +F+
Sbjct: 236 VSLSPVWLFSEDLKAGRVIALLQDYQTRSLPIHAVSPANRRQSARVNAFVDFM 288


>gi|167625942|ref|YP_001676236.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167355964|gb|ABZ78577.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 291

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 146/291 (50%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT A+++L +S + +SRQIS LET +  KLF+R  R +++TE 
Sbjct: 2   FNWEGVSEFVAVAEAESFTKASQRLGISTAQVSRQISALETRLASKLFHRTTRKVSVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +      P G L+I   +  G+  +   + +F++ YP++
Sbjct: 62  GRIYYQHCRQVLDGLEEAERAITNLQTTPRGLLKITAPVTYGEKTIAPLINDFVVQYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L N+ +D+  +  D AIRL   ++ SS++ +KL +   +  A+P Y+     P S
Sbjct: 122 EVKLNLSNQKVDLIDEGYDLAIRLGH-LEDSSMMAKKLSSRTQYVCASPSYISTYGIPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL++HN +           D+       +         L  NS  +++   + G GI 
Sbjct: 181 LSELEQHNCLM-------GTMDYWRFQENGKTRNVRVRGTLSCNSGHALVDAAIKGIGIV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY V    ++  LV ++E    P   ++  YP+    + K++     +
Sbjct: 234 QLPDYYVDPFIEDGQLVTLLEQNRQPEEGIWALYPQNRHLSPKVRMLLEHL 284


>gi|282599963|ref|ZP_05972517.2| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
 gi|282567011|gb|EFB72546.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
          Length = 330

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 143/296 (48%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  D+  + +F  V   GS T AA+ LH+++S++S+++   ET+ GI+L  R  R L LT
Sbjct: 23  IDIDYSLIPIFITVVEQGSLTKAADTLHMTKSAVSKKLMAFETQTGIRLITRSTRHLQLT 82

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    + +  +   +  +   +    G L+I+  +  G   L   L EFL  +P
Sbjct: 83  EAGEIYYSWLKKAHETINDGREAIARYADTVDGILKISAPMIFGTLHLNKLLPEFLKRWP 142

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++ ++I D+K +D+  +  D AIR+ + +Q SSLI R L        A+P +L+    P
Sbjct: 143 QLRTEIIFDDKLVDLIGEGFDIAIRIGE-LQDSSLISRTLSPCRSVLCASPAWLEERGIP 201

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++QEL +HN + +          F  L    R   +      + N+ LS+ Q  + G G
Sbjct: 202 KNLQELAEHNCLLYSYFQAGQTWSFTHLGEKVRFTPK---GNFRANNSLSLHQAALQGLG 258

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  LP +IV  +     L+ ++ D   P   +Y  YP+      K+ AF +F+  K
Sbjct: 259 VCQLPQFIVAPDILAGRLIPLLPDYHLPLHHIYAVYPDKEFLPKKVSAFLDFLQEK 314


>gi|110832979|ref|YP_691838.1| LysR family transcriptional regulator [Alcanivorax borkumensis SK2]
 gi|110646090|emb|CAL15566.1| transcriptional regulator, LysR family [Alcanivorax borkumensis
           SK2]
          Length = 290

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 134/293 (45%), Gaps = 13/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD++  F  V R GSF  AA  L +S S +SR ++ LET++G +L YR  R LTLT+ G+
Sbjct: 4   WDRIEAFVEVVRGGSFARAARHLGVSSSHVSRLVARLETQLGTQLLYRTTRRLTLTDAGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++   +     + +   +P+G LR+      G+  +   + +FL  +P + +
Sbjct: 64  VYFEHCCQLFDGFQEALNAISDFQQQPTGVLRLTCATTFGERFIAPLVNDFLARHPQLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL   N+ +DI  +  D AIR    +  SSLI RKL     +   +P Y      P ++ 
Sbjct: 124 QLDFTNRRVDIVDEGFDVAIRTGA-LPDSSLIARKLCPRREYVVGSPGYFSRHARPHTLG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL  HN +              W   VD      ++    + NS  +++     G G+A 
Sbjct: 183 ELSGHNCL--------QGSSEQWTFDVDGQHRHSKVQGNWKGNSGAALLDAARKGIGLAQ 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LPDY V ++     LV +++        V+  YP     + K++   +F+  K
Sbjct: 235 LPDYYVGEDLARGQLVSVLDQYACTHTAVWVVYPRHRHLSPKVRQCVDFLVEK 287


>gi|83942615|ref|ZP_00955076.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
 gi|83846708|gb|EAP84584.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
          Length = 301

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 105/288 (36%), Positives = 173/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE ++   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEEQLNTNLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+T    +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATVAMSKRLDTAAARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q+  L+++KL+ I M  YA+P YL     P  
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQAD-LVRKKLMMIKMCMYASPAYLAANGTPQR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++++  H LI       +     N +  +   +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 LEDMSDHRLICQNTDSNQVHAGLNLIQQL---MMHDVRSMLTVNNYFGVLQAVINNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+++D P+LV+++ +  +    V+  YPE L+ + ++ AF++F+
Sbjct: 237 VLPDYLIQDFPDLVQVLPETESADVPVFLAYPEELRASKRVAAFKDFV 284


>gi|258544031|ref|ZP_05704265.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
 gi|258520728|gb|EEV89587.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
          Length = 299

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 137/294 (46%), Gaps = 7/294 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +  + +  F    +SGSFT AA+QL L++S+I ++I+ LE  + ++L  R+ R L  
Sbjct: 1   MELNNLNDITAFVASVKSGSFTAAAKQLGLTRSTIGKRIARLEARLNVRLLQRNTRNLAP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G   +   + V  +L+  +  L + S+KP G+L+I+  + LG+ +L   L +FL  Y
Sbjct: 61  TDEGRLFYERCTAVLEELDNAEQCLAQRSIKPQGRLKISAPLVLGKTILPPLLADFLHRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P   ++L L +   D+  D  D A+R   P Q  SLI R +    M   AAP YL     
Sbjct: 121 PQTSVELSLTDDYADLISDGYDLALRNGNPPQCDSLIARTVAQQKMLTCAAPGYLVQHGT 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S  +L  H  + F          F       +            ++  ++++  +   
Sbjct: 181 PQSPDDLAHHQCLHFLHGGRVSRWHFQ---QKGKETTFQGSGRFSTDNGEALLELALSAF 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP Y+V+   D  +L  ++ D       V   YP   + + K++A  + +
Sbjct: 238 GIVQLPHYLVQAALDAGSLKSVLSDFQPKPVPVMAVYPSRKQLSPKVRALVDMM 291


>gi|217973116|ref|YP_002357867.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217498251|gb|ACK46444.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 292

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 148/293 (50%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELNQHNCLIGNHNYWRFVEN-------GRERNIKVRGNLNCNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PDY ++D+     L+ +++        ++  YP+    + K++   +++  K 
Sbjct: 236 PDYYIEDDINAGRLLSLLDGHREAKEGIWALYPQNRHLSAKIRVLVDYLAEKL 288


>gi|163751657|ref|ZP_02158877.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161328483|gb|EDP99638.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 289

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 149/296 (50%), Gaps = 11/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT A+++L +S + +SRQ+S LET +  KLF+R  R +++TE 
Sbjct: 2   FNWEGVSEFVAVAEAESFTKASQRLGISTAQVSRQVSALETRMATKLFHRTTRKVSVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +      P G L+I   +  G+  L   + +F+  YP++
Sbjct: 62  GKIYYQHCRQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGEGTLAPLINDFIAKYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I++ L N+ +D+  +  D A+RL + ++ SS++ ++L +  ++  A+P YL     P S
Sbjct: 122 EIKITLTNQKLDLIDEGFDLAVRLGQ-LEDSSMMAKRLGSRTIYVCASPDYLSKYGLPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL++HN +       +   D+       +         L  NS  +++   +   GI 
Sbjct: 181 LSELEQHNCL-------QGTLDYWRFQENGKTRNIRVRGNLTCNSGHALVDAAIKSIGIV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LPDY V    ++  LV I+E    P   ++  YP     + K++   +++    R
Sbjct: 234 QLPDYYVLPFIESGQLVPILEHNRQPDEGIWALYPHNRHLSPKVRMLLDYLSEALR 289


>gi|153832086|ref|ZP_01984753.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148871701|gb|EDL70542.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 300

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 144/302 (47%), Gaps = 10/302 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D   +FY +   GSF+ AA Q+ L++S +S++I+ LE E+G++L YR  R L +TE G
Sbjct: 3   NTDDYIIFYHLVEQGSFSAAARQMELTKSVVSKRIAKLEQEIGVQLLYRTTRTLKVTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    VY  + T +  +       SG ++I      G+ +L   + EF   YPDI 
Sbjct: 63  QSFFEHARSVYQAVATAEESIVGLGKNLSGNIKITVPTISGELILPTVISEFNQAYPDIN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + LDN+  DI  +  D AIR    +  SSLI RKLV  +    A+P Y+    +P + 
Sbjct: 123 IDMELDNRFADIVNEGFDLAIRTG-VLPDSSLIARKLVDANWIVCASPKYVAKHGKPQTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L KHN + +        E   W    D  + + ++   L  N+  ++    +LG GI 
Sbjct: 182 DDLTKHNCLVYAYQETGARE---WAFKRDDEVYQVKVDGNLCTNNSSALRNVALLGQGII 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KARDW 297
            +P  +V ++     L+++ +D       +Y  YP   +   K+K F   ++   + R  
Sbjct: 239 YVPRVLVYEDLQQGKLIQLFKDETAKCLGIYAVYPYTRQQPEKIKIFIEHLYQCFQRRSH 298

Query: 298 KF 299
           +F
Sbjct: 299 QF 300


>gi|37525474|ref|NP_928818.1| hypothetical protein plu1525 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784902|emb|CAE13818.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 302

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 146/302 (48%), Gaps = 9/302 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L +F  V  +GSF+ AAE L L+ S++SR I  LE ++G+ L  R  R L+LT
Sbjct: 1   MKANSEELTIFVSVVENGSFSRAAEHLQLANSAVSRSIKKLEKKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + E+ ES   PSG LRI     +  +LL   +K F   YP
Sbjct: 61  EEGERYFRRVQHVLQEMAAAETEIMESKHTPSGLLRIDAATPVVLHLLIPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + LI     I++     D AIR+   +  SSL  R L + +    A+P YLK    P
Sbjct: 121 EITLSLISSETYINLIERKVDIAIRVGN-LTDSSLRARPLFSSYRKIVASPEYLKKYGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I+EL  H  + F + +         +A  D  + E  +  L  NS  ++ Q CV G+G
Sbjct: 180 QCIEELKNHICLGFTEPVSLNTWP---IACQDGQLHEITVG-LSSNSGETLKQLCVTGNG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L DY++     +  LV ++ +   P        Y      + +++AF +F+     D
Sbjct: 236 IACLSDYMIDKEITSGELVELLVEKRLPVGMPFNAVYYSDQAVSTRIRAFIDFLSEYVND 295

Query: 297 WK 298
            +
Sbjct: 296 SR 297


>gi|309778790|ref|ZP_07673563.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308922498|gb|EFP68122.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 323

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 146/293 (49%), Gaps = 6/293 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D    ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T
Sbjct: 9   QMDRLQAMQVFTRVVEASSFTKAADSLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVT 68

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  +     +   LE T+    +SS    G LRI     +G+ LL   +++F   YP
Sbjct: 69  ADGAAYYERCVRLLGDLEETEAAFSQSSSGARGTLRIDVPASIGKRLLVPRIRDFHEAYP 128

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++ + ++ +D+  +  DCA+R    +Q SSL+ R++  + M   A+P YL  C  P
Sbjct: 129 DLQLEIGMSDRTVDLVQEGVDCAVR-GGELQDSSLVARRIGQLSMVNCASPEYLARCGTP 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L  H  + +         D++++    + I + R S + VN   S +   + G G
Sbjct: 188 KTLEDLQDHTAVNYFSARNGRRMDWDFVIDGQKQIHKVR-SMVSVNDAESAVACGLHGLG 246

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     ++V ++     LV ++ D I+    V   YP     + K++ F +++
Sbjct: 247 LLQTSRFLVYEHLMSGALVEVLPDYISEPVPVSVVYPHNRHLSPKVRVFVDWV 299


>gi|85703356|ref|ZP_01034460.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
 gi|85672284|gb|EAQ27141.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
          Length = 301

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 112/288 (38%), Positives = 173/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA EQLHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGEQLHLSQSAVSRQIRALEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATRAMMKRLDAATARIRDSEEEVFGDLRVTTTTGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+++HM  YA   YL+   EP S
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMSVHMCLYATQSYLEVHGEPTS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +++ H LI      P+  +       V+  +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 LDDMNAHRLIC---QNPRSAQVGAGAMLVNELMTNDISSLLTVNNYFGVLQGVLHNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P LVR++ +V +    V+  YPE L+++ ++ AFR+F+
Sbjct: 237 VLPDYLTRDFPQLVRVLPEVQSVEVPVFLAYPEELRHSKRIAAFRDFV 284


>gi|89901310|ref|YP_523781.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89346047|gb|ABD70250.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 299

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 143/292 (48%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++ F  V  +GSF  AA+ L +S++++SR +  +ET +G++L +R  R L+LT+
Sbjct: 1   MDRFLEMQTFNAVVDAGSFVKAADALGMSKAAVSRYVVDMETRLGVRLLHRTTRRLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +  + E+  +L   + E+   S   SG LRI      G   L      F + +P+
Sbjct: 61  EGQIFYVRSKELLAELAEAEDEITSRSDAASGLLRINAPFTFGVLHLAPLWGAFRVRHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L ++ +D+  +  D AIR+   +++S+L+ ++L T  M   A+P YLK    P 
Sbjct: 121 VKLDVTLADRLVDLVEEGYDVAIRIAN-LENSTLVSKRLATTRMVLCASPQYLKLHGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  H +I++     K    F        P+      C+  N+  +     +   GI
Sbjct: 180 HPGELADHAVISYSYWSTKDEWPF---KGPLGPVSVKTNPCIHTNNGDTCRAAALASQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P ++V D+     LV +M +  +    +Y  YP     + K++A  +F+
Sbjct: 237 ILQPSFLVGDDLASGALVELMPEFRSLELGIYAVYPSRKHVSPKVRALIDFL 288


>gi|197251911|ref|YP_002145256.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197215614|gb|ACH53011.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 304

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +H  + F + +         +A  D  + E +   +  NS  ++ Q C+ G+G
Sbjct: 180 ETVEELKRHLCLGFSEPVSLNTWP---IACSDGQLHEIKCG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIAWGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|330810481|ref|YP_004354943.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378589|gb|AEA69939.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 292

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 143/294 (48%), Gaps = 8/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  V  SGSFT AAE+L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEEMRIFAQVMESGSFTAAAEKLGLSKQFVSRKLMELEQRLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     + +++E  +  +   + +P G +R++  +      L   L  FL  YP + +
Sbjct: 64  RYYEAALRLLNEVEQVEQGISGQTSEPRGTIRLSAPLSFAVAHLGSLLPLFLQRYPGVSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ S+LI R++ TI     A+P YL     P   +
Sbjct: 124 EVDLSDRSVDLLGEGYDLALRIG-VLEDSTLIARRIATIERVYCASPTYLAQKGTPARPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G                 +P+       ++ N+   +    + G GI  L
Sbjct: 183 DLRNHDCLPYGHSRQVQWR----FVGAGKPLTLEVTGRMRANNGDLLRDAAIAGMGITYL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P +I+ D   +  L++++E   T    +   YP+  ++   ++A   F+  + +
Sbjct: 239 PAFILGDALKDGRLIKVLEGFETEPLALSAVYPQHRQSARPVQALVEFLREQMQ 292


>gi|119897538|ref|YP_932751.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119669951|emb|CAL93864.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 308

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 134/291 (46%), Gaps = 8/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++A  GSFT AA +L+L+  ++S++++ +E  +G++L  R  R ++LT++G   
Sbjct: 7   ELAFFLLLADKGSFTAAARELNLTPPAVSKRLAQIEQRLGVRLLNRSTRRVSLTDEGELY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +E  +  L      P G LR+  T+  G+  +   +  F   +P++++QL
Sbjct: 67  LEHARRIVADIEDMEASLGSRRAAPKGLLRVNATLGFGRTTIAPIVSAFARQHPEVEVQL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  ID+     D AIR  + +  S L  RKL++      A+P YL     P +  EL
Sbjct: 127 QLTDAPIDLVATGFDLAIRFGE-LPDSRLSARKLMSNRRFLCASPAYLDAHGTPQTPAEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  I              W     R +   ++   L  N    ++ + + G GI +  
Sbjct: 186 ARHACILHRQNDDAYG---IWRLARGRHVETVKVRGTLSSNDGDVVLGWALDGHGILIRS 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ +    ++  L  ++ D   P+  +Y  YP       +++AF +F+  +
Sbjct: 243 EWDLAKYLESGRLRAVLPDYTLPTADLYAVYPARRNQPARVRAFIDFLLAR 293


>gi|83644057|ref|YP_432492.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632100|gb|ABC28067.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 330

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 138/302 (45%), Gaps = 8/302 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F  VA + SF  AA ++ LS+S ++R++  LE E+G+ L  R  R ++LT 
Sbjct: 27  MDKLAGLTAFVNVAEAESFAKAAREMGLSRSQVNRRVIALEDELGVTLLARTTRHVSLTP 86

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     + + L   +  +Q    +P G L+I   +  G   L   L +F+  YP+
Sbjct: 87  TGQAFYLRAKSILNDLREAETAIQSDHAEPQGDLKINAPMSFGTMHLSSALADFMTRYPN 146

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L+LD++ +D   +  D  +R+ +  ++ SLI+  +V       A+P YL+    P 
Sbjct: 147 IRVHLVLDDRFVDPVSEGFDITVRVAETREAPSLIEHTIVEAKRLLCASPGYLQQHGRPR 206

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +I+EL     + +G+L          L   D P    R+   L  N+  ++    V G G
Sbjct: 207 TIKELASRPCLHYGNLASGYTWR---LRRGDAPETSVRVNGVLCCNNAEALRDAAVAGLG 263

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +ALLP +I         LV ++ +   P   +   YP       +++ F  F+  +  D 
Sbjct: 264 VALLPTFIAGPELQTGRLVSVLPEYQAPPVYLSLLYPPNRHLAARVRVFVKFMQARFGDQ 323

Query: 298 KF 299
            +
Sbjct: 324 PY 325


>gi|238021580|ref|ZP_04602006.1| hypothetical protein GCWU000324_01480 [Kingella oralis ATCC 51147]
 gi|294671432|ref|ZP_06736280.1| hypothetical protein NEIELOOT_03139 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|237866194|gb|EEP67236.1| hypothetical protein GCWU000324_01480 [Kingella oralis ATCC 51147]
 gi|291306865|gb|EFE48108.1| hypothetical protein NEIELOOT_03139 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 299

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 137/294 (46%), Gaps = 7/294 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +  + +  F    +SGSFT AA+QL L++S+I ++I  LE  + ++L  R+ R L  
Sbjct: 1   MELNNLNDMTAFVASVKSGSFTAAAKQLGLTRSTIGKRIVRLEARLNVRLLQRNTRNLAP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G   +   + V  +LE  +  L + S++P G+L+I+  + LG+ +L   L +FL  Y
Sbjct: 61  TDEGRLFYERCTAVLEELENAEQCLAQRSIEPQGRLKISAPLVLGKTILPPLLADFLHRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P   ++L L +   D+  D  D A+R   P Q  SLI R + +  M   AAP YL     
Sbjct: 121 PQTSVELSLTDDYADLISDGYDLALRNGNPPQFDSLIARTVGSQQMLTCAAPGYLVQHGT 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S  +L  H  + F          F       +            ++  ++++  +   
Sbjct: 181 PQSPDDLAHHQCLHFLHGGRVSRWRFQ---QKGKETTFQGSGRFSADNGEALLELALSAF 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP Y+V+   D  +L  ++ D       V   YP   + + K++A  + +
Sbjct: 238 GIVQLPHYLVQTALDAGSLKSVLSDFQPKPVPVMAVYPSRKQLSPKVRALVDMM 291


>gi|87122067|ref|ZP_01077951.1| putative transcription regulator protein [Marinomonas sp. MED121]
 gi|86162614|gb|EAQ63895.1| putative transcription regulator protein [Marinomonas sp. MED121]
          Length = 299

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 149/292 (51%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ VF  V  + SF+ AA QL +++S++S+QI  LE EVG++L  R  R L+LTE
Sbjct: 1   MDELRRIGVFTRVVETKSFSEAARQLGVAKSAVSKQIVQLEKEVGVRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R ++E+ ++ +    EL+E   +P+G LRI+  +  G   L   +KE   LYP 
Sbjct: 61  AGEIFYRHSAEIVNRTKIALSELKEYQNQPTGTLRISCPVSFGTEHLIPVIKEVRALYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L+L+++ I++  +  D AIR+   +Q S+L+ + +    +  +A+P YL     P 
Sbjct: 121 LKIDLLLEDRIINMVEEGVDLAIRIGW-LQESNLVAKLVCETPVSVFASPEYLAQKGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L KH+ I+          +F       +       S L+ NS  +++     G GI
Sbjct: 180 TPQDLQKHDWISLSLFSSPLTWEFE---KKGQKQSVQMHSQLKSNSVAAVIALSKSGQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + L  + ++++     L  ++ D       +Y  YP       K++ F +F+
Sbjct: 237 SALTKFCLQNDFEKGLLQPLLTDYKLKPSGIYAVYPHREHVPPKVRIFIDFL 288


>gi|295699606|ref|YP_003607499.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438819|gb|ADG17988.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 303

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 144/297 (48%), Gaps = 10/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D +R+F     + +FT AA +L LS+  +SR++  LE  +G++L  R+ R L +T+ 
Sbjct: 1   MQLDDMRIFVATVDAHNFTAAANRLSLSKQFVSRRVMALEEALGVQLLIRNTRKLAVTDL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++E  +  +      P G LR++  +  G   L   +  FL  + D+
Sbjct: 61  GQEFYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMTHLSPLVAAFLREHRDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +  + L ++ +D+  +  D AIR+   +  SSLI +KL+ + M A  +P YL+    P+ 
Sbjct: 121 RFDMELSDRAVDVVGEGFDMAIRIG-TLADSSLIAQKLMDVRMIACCSPAYLRRRGSPVV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +L  H+ + +G          NW   VD  +    +   L+ N+   I    V G GI
Sbjct: 180 PADLANHDCLLYGH-----GGAVNWEFRVDGAVKSVEVRGPLRANNGELIRDSAVAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             LPD+I+ D   +  LV ++E  +  +  VY  YP+  +++  ++AF  F+    R
Sbjct: 235 VRLPDFIIADALASGQLVPVLEAFLPSATGVYAVYPQHRQSSVTIRAFVEFLRKHLR 291


>gi|170724740|ref|YP_001758766.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810087|gb|ACA84671.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 292

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 146/291 (50%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT A+++L +S + +SRQ+S LET +  KLF+R  R ++ TE 
Sbjct: 2   FNWEGISEFVAVAEAESFTKASQRLGISTAQVSRQVSALETRLATKLFHRTTRKVSTTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L+  +  +      P G L+I   +  G+  +   + +F   YP++
Sbjct: 62  GRVYYQHCRQVLDGLDEAERAITNLQSSPRGLLKITAPVTYGEMTIAPLINDFAAKYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  A+P YL     P S
Sbjct: 122 EVKINLTNQKLDLIDEGYDLAIRLGQ-LEDSSMMAKRLSSRTQYVCASPSYLSTFGIPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL++HN +           D+       +         L  NS  +++   + G GI 
Sbjct: 181 LSELEQHNCLL-------GTMDYWRFEDNGKTRNVRVKGNLSCNSGHALVDAAIKGIGII 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY ++   ++  LV ++E   +P   ++  YP     + K++   + +
Sbjct: 234 QLPDYYLQSFIEDGQLVPLLEQNRSPEEGIWALYPHNRHLSPKVRMLLDHL 284


>gi|197337542|ref|YP_002158766.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314794|gb|ACH64243.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 300

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 142/302 (47%), Gaps = 8/302 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+F+   +D + +F  V  SGSFT AA     S S IS++I  LE  +G++L +R  R L
Sbjct: 1   MAFNSALFDGMVIFSEVVTSGSFTQAALNSGHSTSYISKEIGKLEERLGVRLLHRTTRTL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT +G    +   ++    +  +  +     KP G+L+++  +    + L+  L +F  
Sbjct: 61  RLTPEGELYFQQCQQLIEDAQMAENSITGQQEKPKGRLKVSCPVGFALSRLRPILGKFTD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYPDI ++L L+++ IDI  +  D AIR    ++ SSLI R+ +       A+P YLK  
Sbjct: 121 LYPDITLELDLNDRKIDIVAEGFDMAIRASHQLEDSSLISRRFLRSRAITIASPDYLKKH 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             PL   EL  H  I +  +    + DF       +P+     S +  N+    +  C+ 
Sbjct: 181 GAPLHPNELPSHKTIGYAYVKQGAVWDFT--DKNSQPLAIQLNSQVITNNSFMELSLCLA 238

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GI  +P + + D      LV +  D    +  ++  YP     + K++ F +FI    
Sbjct: 239 GQGITRIPHFHLTDELETGKLVELFADYPKLTIDIFMVYPSRKHMSAKVRCFMDFISEHL 298

Query: 295 RD 296
            D
Sbjct: 299 GD 300


>gi|254485721|ref|ZP_05098926.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214042590|gb|EEB83228.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 301

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 106/288 (36%), Positives = 173/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE ++   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEEQLNTNLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+T    +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATVAMTKRLDTASARIRDSEEEIFGELRVTTTTGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q+  L+++KL+ I M  YA+P YL     P  
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQAD-LVRKKLMMIKMCLYASPTYLAEHGTPQR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++++ +H LI       +       L  + + +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 LEDMSEHRLICQNTDSDQVNAG---LQLIQQLMMYDVRSMLTVNNYFGVLQGVIHNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P+LV+++ D  +    V+  YPE L+ + ++ AF++F+
Sbjct: 237 VLPDYLTQDFPDLVQVLPDTESADVPVFLAYPEELRTSKRVAAFKDFV 284


>gi|259417823|ref|ZP_05741742.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259346729|gb|EEW58543.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 301

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 140/298 (46%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L EFL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQTAPSGLLRISVATDFGVNHLSPVLSEFLRDFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ SSL  RKL        A+P YL+    P 
Sbjct: 121 ITVNMVLNNRFVELISEGFDMALRIGE-LEDSSLRARKLTETTKRMVASPEYLEKYGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ + +     +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNEHKLLHYSNQSSGNVWKLTAPSGEKRQVRS--TGWLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKDNPN--LVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP Y+  +     LV  +M  +   +  +Y  YP       K++AF +F+     +
Sbjct: 238 AYLPSYLYAEAKAEGLVEDVMPQLPVETLGIYAVYPPGRFTQPKVRAFIDFLVHAFAE 295


>gi|16763639|ref|NP_459254.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167995084|ref|ZP_02576174.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168239989|ref|ZP_02664921.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261347|ref|ZP_02683320.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194448830|ref|YP_002044240.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197262313|ref|ZP_03162387.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16418755|gb|AAL19213.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194407134|gb|ACF67353.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197240568|gb|EDY23188.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205327153|gb|EDZ13917.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205340145|gb|EDZ26909.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205349718|gb|EDZ36349.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|267991943|gb|ACY86828.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156877|emb|CBW16353.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911221|dbj|BAJ35195.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224910|gb|EFX49971.1| Transcriptional regulator LysR family, yafC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323128571|gb|ADX16001.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987202|gb|AEF06185.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 304

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +H  + F + +         +A  D  + E +   +  NS  ++ Q C+ G+G
Sbjct: 180 ETVEELKRHLCLGFSEPVSLNTWP---IACSDGQLHEIKCG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|323496198|ref|ZP_08101256.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323318475|gb|EGA71428.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 299

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 133/291 (45%), Gaps = 5/291 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  V  SGSFTHAA+    S S IS+++S LE  +G++L +R  R L+LT +G 
Sbjct: 6   LDGMVTFVHVVDSGSFTHAAQITGHSTSYISKEMSKLEERLGVRLLHRTTRTLSLTPEGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++    +  +  L     +P G LRI+  +  G   L   L +F+ LYP +  
Sbjct: 66  LYYESCKQLVESAQEIENALGGKQSEPQGHLRISCPVSFGVVELSPMLAKFMSLYPKVTF 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R       SSLI R++ T      AAP YL+    P    
Sbjct: 126 EVDLSDRRVDLVAEGIDIAVRAVHKAADSSLISRRIKTAQAVTVAAPSYLRKYGTPKHPS 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++H  IT+       + ++N  +     I     S    NS    M  C+ G GI  L
Sbjct: 186 ELNQHKAITYSYQKNPNLWEYN--SNDGEMIKVEVDSVFAANSPEMEMSMCLEGIGITRL 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P+   ++      LV +  D       +   YP     + K++AF +F+  
Sbjct: 244 PEEHTREAIATGRLVELFSDFPKHKIDLCLVYPSRKHMSAKVRAFIDFMAE 294


>gi|153000928|ref|YP_001366609.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151365546|gb|ABS08546.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 292

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 147/293 (50%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELSQHNCLIGNHNYWRFVEN-------GRERNIKVRGNLNCNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PDY ++++     L+ +++        ++  YP+    + K++   +++  K 
Sbjct: 236 PDYYIEEDIQAGRLLSLLDGHREAKEGIWALYPQNRHLSAKIRVLVDYLAEKL 288


>gi|319787271|ref|YP_004146746.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465783|gb|ADV27515.1| transcriptional regulator, LysR family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 340

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 132/298 (44%), Gaps = 5/298 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M++D +   VF  V   GSF  AA  L L ++++SR++  LET +G +L +R  R L LT
Sbjct: 1   MAYDLNDTLVFVKVVEQGSFIAAARSLGLPKTTVSRKVQELETRLGAQLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +  +LE  +  + +    P G LR      +G   +   L EF   YP
Sbjct: 61  EAGNVYFEHCQRIAQELEEAEGAVGQLQGGPRGWLRFTVPYSIGIAWISPLLGEFHARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + N  +D+     D A+R   P+  S+LI R+L       +A+P YL    EP
Sbjct: 121 EIRLDMHMSNDQVDLIGSEIDVALR-GGPLPDSTLIARRLAGFRTQVFASPDYLSRHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGS 239
           L   EL  H ++              W  +      E  I+ L V N   +++   + G 
Sbjct: 180 LHPDELQHHRILAVRKHYHSHPTRITWPLSDGTDTTEFPINPLMVANDPSALIGAVLCGE 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+ L  D   K   ++  L R++     P       +P     + K++AF +F+  + 
Sbjct: 240 GLTLATDVTAKPYVESGALRRVLAGWTGPEVDFNAVFPRGRVMSPKVRAFVDFLVERL 297


>gi|261245481|emb|CBG23271.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 304

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGEQYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +H  + F + +         +A  D  + E +   +  NS  ++ Q C+ G+G
Sbjct: 180 ETVEELKRHLCLGFSEPVSLNTWP---IACSDGQLHEIKCG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|87119070|ref|ZP_01074968.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86165461|gb|EAQ66728.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 298

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D LR+F  +A++ + + A ++L LS +  S  I+ LE  +G++L +R  R ++LTE+
Sbjct: 1   MNIDHLRLFVRIAQTHNISQAGQELGLSPAVASSHINKLEAGLGVRLIHRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        +V   +E  Q  +      PSG LR++     G+  +   L +F+  YP+I
Sbjct: 61  GIAFFPHAEDVIASVEAAQASVGAGKSTPSGTLRVSAPASFGRMHVLPALTDFMARYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L +  +D+     D AIR  + ++ SSLI +KL   +    A+P Y+K    P +
Sbjct: 121 KVDLKLSDTIVDLVEGGFDIAIRNSR-LKDSSLIAKKLANDNRILCASPSYIKKYGLPNA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L++H+ IT   L   C +      T   P+        + ++  ++    V G GI 
Sbjct: 180 PAALNQHHCITLIGLEDWCFD------TPQGPVNIKTKGQFRTDNGEAVRDASVNGIGIT 233

Query: 243 LLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNF 289
           +   + V  +     LV IM +        ++  YP +     K++AF ++
Sbjct: 234 IGSKWSVYQHLKSGELVHIMPEFPLISETAIWAVYPSSRLLAPKVRAFIDY 284


>gi|16759242|ref|NP_454859.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142983|ref|NP_806325.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213162314|ref|ZP_03348024.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417582|ref|ZP_03350724.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213428409|ref|ZP_03361159.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213619182|ref|ZP_03373008.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213857339|ref|ZP_03384310.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|25319826|pir||AF0533 hypothetical transcription regulator yafC [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501533|emb|CAD08710.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138615|gb|AAO70185.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 304

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/299 (29%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKVIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL +H  + F + I         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ESVEELKQHLCLGFSEPISLNTWP---IACSDGQLHEIECG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|91776142|ref|YP_545898.1| LysR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710129|gb|ABE50057.1| transcriptional regulator, LysR family [Methylobacillus flagellatus
           KT]
          Length = 338

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 145/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AA+ L L +++++  I  LE  + ++L  R  R L+LT 
Sbjct: 2   MDRLQAMQVFTRVVDANSFTRAADSLGLPRTTVTTTIQALEGLLNVRLLNRTTRRLSLTP 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  +++ T+   ++ +  PSG+LRI     +G+ ++   L +F   YPD
Sbjct: 62  DGAAYYERCMRILAEVDETEALFRDVTRGPSGRLRIDVPPSIGRLIIIPKLCDFYTRYPD 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + + ++ +D+  +  DC +R+   +Q SS++ R++ T H+   AAP YL     P 
Sbjct: 122 VELVIGMSDRPVDMVQEAVDCVVRVGD-LQDSSMVARRIGTFHIVTCAAPRYLAEYGMPG 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ +L  H+ + +     +   + +W   ++  + E ++   + VN     +   + G G
Sbjct: 181 TLDDLQHHHAVHY--FSSRTGRNMDWDFVIEGKVTEVKMAGRVAVNDSEVYVACALQGFG 238

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P Y+V    ++  LV ++      S  +   Y      + K++AF ++I  
Sbjct: 239 LIQAPRYMVLPQLESGELVEVLPQWQPSSHPISVVYLHNRHLSPKVRAFVDWIAE 293


>gi|168238655|ref|ZP_02663713.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737606|ref|YP_002113273.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194713108|gb|ACF92329.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288591|gb|EDY27968.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 304

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +H  + F + +         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ETVEELKRHLCLGFSEPVSLNTWP---IACSDGQLHEVECG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|197294944|ref|YP_002153485.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195944423|emb|CAR57025.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 308

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 144/299 (48%), Gaps = 10/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE
Sbjct: 3   NMELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P 
Sbjct: 63  SGQEFYVRAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P 
Sbjct: 123 VRLNLDLTDRRVDLIGEGFDLVLRIGS-LEDSTLIARPLGAWRMVACASPAYLKRHGMPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L  H  + +G           W   VD  +    +   L  N+   +    + G G
Sbjct: 182 TPADLAGHTCVLYGRE-----RRVGWEFRVDGAVRTFDVQGPLVANNGEVVRDAAIAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IALLP +I+    D+  LV +++  + P  T+   +P+  +    L+ F  F+  +  +
Sbjct: 237 IALLPHFIIGAALDSGALVPVLDAYVPPPITLNAVFPQHREGFVTLRTFIGFLAERLAE 295


>gi|149914758|ref|ZP_01903288.1| phosphoribosylformylglycinamidine synthase subunit II [Roseobacter
           sp. AzwK-3b]
 gi|149811551|gb|EDM71386.1| phosphoribosylformylglycinamidine synthase subunit II [Roseobacter
           sp. AzwK-3b]
          Length = 301

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 110/296 (37%), Positives = 175/296 (59%), Gaps = 4/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQ+  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDHLHLSQSAVSRQVRALEESLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G+LR+ TTI  G   L   L +    YPD+
Sbjct: 61  GELLFDATRAMLKRLDAATARIRDSEEEVFGELRVTTTIGFGTLWLAPRLPQLYAKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+++HM  +A+  YL++   P S
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMSVHMCLFASTSYLESRGTPAS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H LI      P+  +       V+  +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 PDDLKHHRLIC---QNPRSAQVGAGATLVNELMTHDVPSLLTVNNYFGVLQGVLHNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LPDY+  D P+LVR++ DV +    V+  YPE L+++ ++ AFR F+  +   ++
Sbjct: 237 VLPDYLTHDFPDLVRVLPDVHSVEVPVFLAYPEELRHSKRIAAFREFVQEEIIAYR 292


>gi|87119248|ref|ZP_01075146.1| hypothetical transcriptional regulator [Marinomonas sp. MED121]
 gi|86165639|gb|EAQ66906.1| hypothetical transcriptional regulator [Marinomonas sp. MED121]
          Length = 302

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 8/296 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+++    D + VF  V  SGSFT AA+    S S IS++I  LE  +G++L +R  R L
Sbjct: 1   MTYNAQLLDGMVVFVEVVNSGSFTQAAQNSGHSTSYISKEIHKLEARLGLRLMHRTTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT +G   ++  S +  + E  +  L    ++P G LRI+       + +   +  FL 
Sbjct: 61  SLTPEGEAYYQQCSLIISQAEEAESALSGQQLEPKGDLRISCPTSFALSQMPCIIANFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP + + + L+N+ +D+  +  D  +R    +  SSLI RK+   H    AAP YL   
Sbjct: 121 KYPLVNLDVDLNNRKVDMITEGYDILVRGAHQLDDSSLISRKVYASHAVTIAAPSYLAKY 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P    +L  H  I++  L    +  + ++    +    P  S L  N+    +  CV 
Sbjct: 181 GVPQHPNDLINHQTISYSYLKQPNI--WQYVDEHQKSFQVPVKSRLMTNNSELELDLCVA 238

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GI  LP + +KD      LV++ E+       +Y  YP     + K++ F +F+
Sbjct: 239 GNGITRLPRFSLKDELETGKLVQLFEEYDKHKIDIYLIYPSRKHLSSKVRCFIDFV 294


>gi|149190046|ref|ZP_01868323.1| putative transcriptional regulator [Vibrio shilonii AK1]
 gi|148836076|gb|EDL53036.1| putative transcriptional regulator [Vibrio shilonii AK1]
          Length = 294

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 152/294 (51%), Gaps = 11/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  V  + SFT AA++L  S ++ISR+++ LE ++G+KLF R  R +++TE G
Sbjct: 3   NWEGINEFVAVVETQSFTGAADRLATSVANISRRVNALEEKLGVKLFVRTTRKVSVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    +   L   ++ + +    P GK+++   +  G+ +L   + EFLL++P I+
Sbjct: 63  ATYYQHCKPLVDGLALAELAITQLQSTPKGKIKMTAPVTFGEQVLAPLMHEFLLIHPQIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + LIL N+ +++  +  D A+RL + ++ SS++ RKL+  HM   A+P YL+N  EP ++
Sbjct: 123 LDLILSNQKMNLVEEGFDLAVRLGR-LEDSSMMARKLLDRHMFVCASPTYLENHGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H+ +       +    +                 +Q NS  +++   + G GI  
Sbjct: 182 SELKRHSCL-------RGSTKYWRFDEKGSERLIHVEGRVQCNSGYALVDAALKGLGIVQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPDY V+   +   LV ++         ++  YP+    T K++   +++    
Sbjct: 235 LPDYYVQPYLEAGELVEVLTPYRGDREGIWALYPQNRMLTSKVRTLIDYLSEAL 288


>gi|114564597|ref|YP_752111.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335890|gb|ABI73272.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 289

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 147/291 (50%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT AA++L +S + +SRQ+S LET +  KLF+R  R ++++E 
Sbjct: 2   FNWEGVSEFVAVAEAESFTKAAKRLGISTAQVSRQVSALETRMATKLFHRTTRKVSVSEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   LE  +  +      P G L+I   +  G+  L   + +F+  YP++
Sbjct: 62  GRIYYQHCRQVLDGLEEAERAITNLQSTPRGLLKITAPVTYGEKTLAPLVNDFIAKYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  A+P Y+     P S
Sbjct: 122 EVKINLTNQKVDLIDEGYDLAIRLGQ-LEDSSMMAKRLCSRTQYVCASPDYVSTFGIPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL++HN +           D+       +         L  NS  +++   + G GI 
Sbjct: 181 LSELEQHNCLL-------GTLDYWRFQENGKTRNVRVKGNLTCNSGHALVDAAIKGIGII 233

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPD+ V    ++  LV ++E    P   ++  YP     + K++   +++
Sbjct: 234 QLPDHYVLPFLEDGQLVPLLEQNRQPKEGIWALYPHNRHLSPKVRMLLDYL 284


>gi|330968179|gb|EGH68439.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 302

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 140/293 (47%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPVFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDLVLRIG-VLEDSSLIARRIASIDRVYCASPTYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  + +G                 +P+       ++ N+   +    + G GI  L
Sbjct: 183 DLHSHECLPYGHSRHVQWR----FQGAGKPVSLNVSGRMRANNGELLKDAALAGLGITYL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV D     +LVR+++++     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVGDALRAGSLVRVLDELRPEPLTLSAVYPQHRQASRPVQAFIEFLRERL 291


>gi|149909840|ref|ZP_01898491.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149807172|gb|EDM67128.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 295

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 145/295 (49%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++    V  +GSFT A+E+L +S++ +S+ ++ +E ++G++LF R  R L LTE
Sbjct: 1   MDTLDGIKTVIAVVETGSFTAASERLAMSKALVSKYVAEVEAQLGVRLFNRSTRRLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  +       +      P G LRI+T++  G  +L   L  FL  +PD
Sbjct: 61  AGQRYYDSALPLLGEFSELVDNVTGEQTSPRGNLRISTSVTFGDTMLSPKLAAFLARFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L L ++ ID+  +  D  IR+   +  SSLI RK+    +   A+P YL     P 
Sbjct: 121 IKVDLQLTDRMIDMLEEAVDVVIRIGS-VDDSSLIARKIADFPLTLCASPQYLATHGHPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q++++HN I   D   +  + +  + +  +       S + VNS  ++    + G GI
Sbjct: 180 KPQDINQHNCII--DSNFRIGKQWPVIDSNGKTEIISVKSNVAVNSPRAVKAMAISGGGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           AL+P +I+KD   +  L  ++    T +F ++  YP         + F +F+  +
Sbjct: 238 ALIPHFIIKDALESGILEEVLPGYSTLTFGMFAIYPHRRYLPKTSRCFIDFLIAE 292


>gi|163734371|ref|ZP_02141811.1| Transcriptional regulator, LysR family protein [Roseobacter
           litoralis Och 149]
 gi|161392379|gb|EDQ16708.1| Transcriptional regulator, LysR family protein [Roseobacter
           litoralis Och 149]
          Length = 303

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 7/298 (2%)

Query: 3   FDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  V   GS + AA  +  + S++S+QI  LE  V  +L  R   G++ T+
Sbjct: 1   MDISAQMLIFATVVEQGSISAAARSMGQTPSAVSKQIGLLEDHVHYRLLNRTRTGVSPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +     +  K +  +  +        G L++A+T+  G++ L   L  F+   P+
Sbjct: 61  EGQDFYEKCRAMAEKFKEAEAMIHTLDGVARGTLKVASTVAFGKSQLIPALPAFMEENPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L L +++ID+  +  D AI   +  ++  ++ R+++       AAP YL+    P 
Sbjct: 121 VQVALDLTDREIDLQSEGFDVAICFAEQRKNPDIVVRRIMQSRRVLCAAPSYLERSGTPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  EL  HN +       +         + D    +      Q NS   + +  + G GI
Sbjct: 181 SFAELAHHNCLRIAGNSRRNAWSDGDSISCDGFEAQ---GSFQGNSTDVVFRAALAGIGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP Y+      +  LV++M +   PS  +   +PE      K +AF +F+  + R+
Sbjct: 238 ARLPCYMANRKFQSGELVQVMPEYAPPSTDIVVMFPEKRNLAPKTRAFVDFLVRRFRE 295


>gi|170735107|ref|YP_001774221.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821145|gb|ACA95726.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 305

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 142/296 (47%), Gaps = 10/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MEINDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYVRAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRIGS-LEDSTLIARPLGAWRMIACASPAYLKRHGTPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L  H  + +G           W   VD  +    +   L  N+   +    + G GI
Sbjct: 180 PADLAGHTCVLYGRE-----RRVGWEFRVDGAVRTFDVQGPLVANNGEVVRDAAIAGLGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP +IV    D+  LV +++  + P  T+   +P+  +    L+ F  F+  + 
Sbjct: 235 ALLPHFIVGAALDSGALVPVLDAYVPPPITLNAVFPQHREGFVTLRTFIGFLAERL 290


>gi|198242091|ref|YP_002214212.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207855768|ref|YP_002242419.1| hypothetical protein SEN0258 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|197936607|gb|ACH73940.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|206707571|emb|CAR31845.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326621956|gb|EGE28301.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 304

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/299 (29%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL +H  + F + I         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ESVEELKQHLCLGFSEPISLNTWP---IACSDGQLHEIECG-ISSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|160875639|ref|YP_001554955.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160861161|gb|ABX49695.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315267828|gb|ADT94681.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 292

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 148/293 (50%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELSQHNCLIGNHNYWRFVEN-------GRERNIKVRGNLNCNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PDY ++D+    +L+ +++        ++  YP+    + K++   +++  K 
Sbjct: 236 PDYYIEDDINAGHLLSLLDGHREAKEGIWALYPQNRHLSAKIRVLVDYLAEKL 288


>gi|229591140|ref|YP_002873259.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
 gi|229363006|emb|CAY49961.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
          Length = 293

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 140/293 (47%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT AAEQL LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRLFCQVMESGSFTAAAEQLGLSKQFVSRRLIQLEDRLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G +R++  +      L   L  FL  +P + +
Sbjct: 64  SYYESALRLLSEVEQVEQGIAGQNSEPRGTIRLSAPLSFAMAHLGCLLPLFLQRHPQVSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ S+LI R++ +I     A+P YL     P    
Sbjct: 124 EVDLSDRPVDLIGEGYDLVLRIG-TLEDSTLIARRIASIPRVYCASPDYLALRGTPQKPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +G           W     +         ++VN+   +    + G G+  L
Sbjct: 183 DLAEHDCLPYGH-----GRQVQWRFK-GKVQALNVSGRMRVNNGDLLRDTAIAGLGVTYL 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV +   +  LV ++++    + T+   YP+  +++  ++A   F+  + 
Sbjct: 237 PTFIVGEAVKDGRLVTVLDEFAPEALTLSAVYPQHRQSSRPVQALVEFLRERL 289


>gi|71065690|ref|YP_264417.1| LysR family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71038675|gb|AAZ18983.1| probable transcriptional regulator, LysR family [Psychrobacter
           arcticus 273-4]
          Length = 303

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 142/292 (48%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R F  V   GSF++AA  L LS   +S+ +S LE ++ I+L  R  R ++LTE
Sbjct: 1   MDRIDAMRAFVAVVTEGSFSNAANTLQLSPQLVSKYVSKLEEQLNIRLLNRTTRKVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS       ++   ++  + +L      P G LRI+  +      +   + +F + YP 
Sbjct: 61  AGSHYFGHAQQILLNIDDMESQLGGLQQNPKGVLRISAPVSFALKHMAKLITDFQMRYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +DI  +  D A+R+ + +++SSLI +K+  I +   AAP YL     P 
Sbjct: 121 VTVDLQLTDRKVDIVEEGFDVALRIGQ-LKNSSLIAKKVAPIRVVLCAAPEYLNKHGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L+ H  + +  +     ++ + L    +     + S  + N+   +++  + G+G+
Sbjct: 180 QPKDLEHHRYLHYSYMNMDSKDNIHQLL---KAKYLKQGSEFRSNNGDVLVEAAIAGAGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P +I+ +   +  LV ++ ++   +  +Y  Y        K++ F +F+
Sbjct: 237 VLQPTFIISEAISSGKLVVVLPEIEPEALGLYAVYAHRKLLPHKVRCFIDFM 288


>gi|119386679|ref|YP_917734.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377274|gb|ABL72038.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 313

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 113/293 (38%), Positives = 171/293 (58%), Gaps = 4/293 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +G  LF+RHARGL LTEQ
Sbjct: 8   MDWDKLRIFHAVADAGSLTHAGDVLHLSQSAVSRQIRALEDSLGTTLFHRHARGLILTEQ 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   TS +  KL+TT   +++S     G+L++ TT   G   L   L +    YPD+
Sbjct: 68  GELLFEATSSMVRKLDTTAARIRDSEESVFGELKVTTTTGFGTMWLVPRLAKLYDRYPDL 127

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q   LI+R+L+ I M  YA P YL     P +
Sbjct: 128 KIDLMLEERVLDLPMREADVAIRMKEPNQQD-LIRRRLLNIRMRLYATPEYLAKAGMPQT 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H LI      P+          +   +G    S L VN+Y  ++Q  +   GI 
Sbjct: 187 LEDLGPHRLICQNPQTPQVSSGAVLSQML---LGRNISSTLMVNNYFGVLQGVLNHVGIG 243

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +LPDY+  D P+L R++ D+ +    V+  +PE L+ + ++ AFR+F+  + +
Sbjct: 244 VLPDYLSADFPSLTRVLPDIQSGEVPVFLAFPEELRASRRVAAFRDFVLEEIQ 296


>gi|83953856|ref|ZP_00962577.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83841801|gb|EAP80970.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 301

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/288 (36%), Positives = 173/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE ++   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEEQLNTNLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+T    +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATVAMSKRLDTAAARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q+  L+++KL+ I M  YA+P YL     P  
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQAD-LVRKKLMMIKMCMYASPAYLAANGTPQR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++++  H LI       +     N +  +   +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 LEDMSDHRLICQNTDSNQVHAGLNLIQQL---MMHDVRSMLTVNNYFGVLQAVINNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+++D P+LV+++ +  +    V+  YPE L+ + ++ AF++F+
Sbjct: 237 VLPDYLMQDFPDLVQVLPETESADVPVFLAYPEELRASKRVAAFKDFV 284


>gi|110634997|ref|YP_675205.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285981|gb|ABG64040.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 328

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/294 (29%), Positives = 139/294 (47%), Gaps = 9/294 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA   SF  AAE+L+L  S+ISRQ+S LE  +G++LF R  R ++LTE G    + 
Sbjct: 22  AFVSVAEHLSFAEAAEELNLKSSTISRQVSKLEDSLGVRLFSRTTRRVSLTEAGKLYLKE 81

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L      +   + +P G LR++  + LG+  L   +  FL LYP++QI+    
Sbjct: 82  CRSLLKNLTDMDAMVSSLNAEPRGCLRVSLPVALGRLYLNSTITAFLNLYPNLQIEADFS 141

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R    + SS LI +K+ +      A+P Y+     P + Q+L  H
Sbjct: 142 DRFVDIVGEGYDLVVRTG-TLPSSGLIAKKIASNKRVLVASPRYIAKHGVPATPQDLADH 200

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + F             LA  ++            NS  +I +  V G GIAL+  Y+ 
Sbjct: 201 NCLRFSHYASSGSNW--QLAKHEQREVVEVNGNFVSNSSDAICEAAVGGLGIALIASYLA 258

Query: 250 KD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--DW 297
            D   +  LV ++    + P   +Y  YP     T K+KAF +F+  + R  DW
Sbjct: 259 HDGIQSGGLVCLLPGWTSQPEAGIYVMYPSTRYLTPKVKAFTSFLEKRFRGVDW 312


>gi|289209246|ref|YP_003461312.1| LysR family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288944877|gb|ADC72576.1| transcriptional regulator, LysR family [Thioalkalivibrio sp.
           K90mix]
          Length = 301

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 142/296 (47%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++++F  V  +G F HAAE L LS++++SR ++GLE  +G +L +R  R L+LT 
Sbjct: 1   MDRFQQMQIFVAVVETGHFVHAAETLGLSKAAVSRAVNGLEERLGARLLHRTTRRLSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G      +  +  +L   + E+ E     SG+LRI   +  G   L      F   +P 
Sbjct: 61  EGETFFGRSKLLLEELAAAEGEISERGTAVSGRLRINVPVSFGIQHLAPLWGTFTARHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L+++ +D+  +  D A+R+   + SSSL+ R+L T  M   AAP YL     P 
Sbjct: 121 VELDVTLNDRSVDLVDEGFDLAVRIG-TLDSSSLVARRLATTRMRICAAPDYLAASGLPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL  H  I +        +D+  L   D P+       L+ N+  + +   + G GI
Sbjct: 180 HPRELADHATIAYS--YHATGDDWT-LTGPDGPVAVTTRPVLRSNNGETCVAAALAGQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              P+++++ +     L  +  D  T +  ++  YP       K +A  +F+  + 
Sbjct: 237 VYQPEFLLQPHLQTGALQVLFPDWETATLGIHAVYPSRRYLLPKTRALIDFLAQQL 292


>gi|170690456|ref|ZP_02881623.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170144891|gb|EDT13052.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 296

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 145/292 (49%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D +R+F     + +FT AA++L LS+  +SR++  LE  +G+ L  R+ R L +TE 
Sbjct: 1   MQLDDMRIFVATVDAHNFTAAAKRLSLSKQFVSRRVMALEEALGVPLLVRNTRKLAVTEL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++E  +  +      P G LR++  +  G   L   + +FL  + D+
Sbjct: 61  GQEFYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMMHLSPLVADFLREHRDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +  + L ++ +D+  +  D A+R+   +  S+LI +KL  +++ A  +P YL+    P +
Sbjct: 121 RFDMELSDRTVDVVGEGFDMAVRIG-VLPDSTLIAQKLFDVNLVACCSPRYLRRRGTPAA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L +H+ + +G           W   VD  +    +   L+ N+   I    V G GI
Sbjct: 180 PADLSRHSCLLYGH-----GGVVAWEFAVDGVLKSFEVQGPLRANNGDLIRDAAVAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPD+IV D   +  LV ++++ +     VY  YP+  +++  ++AF +F+
Sbjct: 235 VRLPDFIVADALRSGELVTVLDEFLPSPTGVYAVYPQHRQSSLTIRAFVDFL 286


>gi|209520289|ref|ZP_03269056.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499260|gb|EDZ99348.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 303

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 144/298 (48%), Gaps = 9/298 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++  F  V  +GSF  AAE L +S+++ISR +  LE  +G++L +R  R L+LTE+G  
Sbjct: 5   QEMTAFTAVVDAGSFVAAAETLRISKTAISRYVDALEQRIGVRLLHRTTRRLSLTEEGRL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   ++  + E+   +  PSG +R+   +  G + L     +F+  YP I + 
Sbjct: 65  FYQRARDILAAIDDAEAEVGSRTQVPSGSIRVNVPLSFGMSHLASIWGQFMAAYPQIDLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+++ +D+  +  D A+R+   +  SSL+ RKL T  M   A+P YL     P   + 
Sbjct: 125 ITLNDRVVDLVDEGYDLAVRISS-LPDSSLVSRKLATTEMLTCASPDYLARNGMPSHPRN 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H ++ +  L  +    F      +  +     + +  N+  +     + G GI L P
Sbjct: 184 LAEHRVLAYTGLTERDEWRFE---GPEGEVVVRTRARVYSNNGDTCRAIALRGGGIILQP 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KARDWK 298
            ++V    +   LVR++ +  + +  +Y  YP   +   K++   +F+    +   W+
Sbjct: 241 SFMVAGDLERGQLVRVLPEYRSRALGIYAVYPSRKQLPLKVRCLVDFLAEAFEIAPWQ 298


>gi|254293470|ref|YP_003059493.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254042001|gb|ACT58796.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 302

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 112/294 (38%), Positives = 170/294 (57%), Gaps = 2/294 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DWDKL+ F+  A +GS T A E+L +SQS++SRQI+ LE  +   LF RHARGL LTE
Sbjct: 4   SMDWDKLKSFHAAAETGSLTAAGERLGISQSAVSRQIASLEEALQNSLFQRHARGLILTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  LHR T+E+     T +  L ++   P G+L +   +  G   L   + +F  +YP 
Sbjct: 64  AGRILHRATAEMASSARTAESALNDTGDTPQGQLHVTAPVAFGSFWLAPRIHKFADMYPR 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L LD+++ D+    A+CAIRL      + LIQRKLVT+    YA+  YL N   P 
Sbjct: 124 MRIKLSLDDREFDLLTLEAECAIRLWAA-NKADLIQRKLVTVRTSLYASEEYLANNGTPE 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++LD+H +I+FG+   + M+  NW   V R     R   LQ+N+   +M+    G GI
Sbjct: 183 RAEDLDRHRIISFGEDA-EQMKAMNWAQRVGRDDRPEREPALQINNVNGMMRAVRSGLGI 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A LP+Y+V     L +++ ++  P+F +YF YP  LK + ++  FR+FI  + +
Sbjct: 242 ADLPEYMVSKEFGLKKVLPELTGPTFDLYFIYPADLKRSRRISIFRDFITSELK 295


>gi|168232186|ref|ZP_02657244.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194472149|ref|ZP_03078133.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194458513|gb|EDX47352.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333471|gb|EDZ20235.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 304

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQATSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +H  + F + I         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ETVEELKRHLCLGFSEPISLNTWP---IACSDGQLHEIECG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|330960495|gb|EGH60755.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 302

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 144/294 (48%), Gaps = 10/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   S +P G LR++  +      L   L +FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQSSEPRGTLRLSAPLSFAVAHLGCLLPQFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++ +I     A+P YL     P +  
Sbjct: 124 EVDLSDRPVDVISEGYDLALRIG-VLEDSSLIARRIASIDRVYCASPGYLAARGTPQTPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243
           +L +H+ + +G           W       +    +S  ++VN+   +    V G GI  
Sbjct: 183 DLHQHDCLPYGHS-----RQVQWRFQGAGKVSSLSVSGRMRVNNGELLRDAAVAGLGITY 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP +IV     + +LVR+++D      T+   YP+  + +  ++ F  F+  + 
Sbjct: 238 LPTFIVGAALRDGSLVRVLDDRRPEPLTLSAVYPQHRQASRLVQVFIEFLRERL 291


>gi|254449935|ref|ZP_05063372.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198264341|gb|EDY88611.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 301

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 138/293 (47%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L +FL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLGEFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D AIR+ + ++ S+L  RKL        A+P Y +   +P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETSRRMVASPGYFEQYGQPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L+ H L+ + +     +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNDHKLLHYSNQSNSAVWKLKAPSGEKRQVRT--AGWLTVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A LP ++  D      +V  + D+   +  +Y  YP       K++AF +F+ 
Sbjct: 238 AYLPSFLYADALAKGLVVEAIPDLPVDTQGIYAVYPPGRFTQPKVRAFIDFLV 290


>gi|50122764|ref|YP_051931.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613290|emb|CAG76741.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 301

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 6/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +  F  V  +GSF  AAE LH+  S+++R I  LE+ +G +L  R  R L++T+
Sbjct: 1   MDRFQAMETFIRVVDAGSFKKAAETLHVLPSTVTRSIKELESHLGARLLNRTTRALSITD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +   +   +    +   +  G +RI  T  L +N L   L +F   +P 
Sbjct: 61  VGLRYYDSCKAILRDVHAAESVTAQQKEELQGTIRIGATPSLVKNFLIPALPDFCERHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++   L +  +DI     DC IR  +P   S L+ R+L T   H  A+P YL+    P 
Sbjct: 121 IRLDFHLGDATVDIVQQGIDCVIRTGEP-PLSRLVARRLGTFQWHICASPRYLEQHGHPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++  L +H  + +          + +       +  PR   + VN   + +   V G G+
Sbjct: 180 TVDSLKEHTAVGYTHSRTGRSTSWGFHDEA-HTVAIPRAGQISVNDTDAYVAAGVAGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +  Y+V+    + +LVR++ D+ +P   ++  YP++   +  ++AF ++
Sbjct: 239 LRIASYMVRQQLSDGHLVRLLPDIGSPFEPIFILYPQSRHLSPAIRAFIDW 289


>gi|89093632|ref|ZP_01166579.1| transcriptional regulator [Oceanospirillum sp. MED92]
 gi|89082028|gb|EAR61253.1| transcriptional regulator [Oceanospirillum sp. MED92]
          Length = 296

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + + +F  V    SFT AAE+L + +S+ISR+I+ LE E+G++L  R  R L++T +
Sbjct: 1   MNLNDVHLFIQVIEHNSFTSAAEKLGIQKSTISRRIAQLEDELGVRLLNRTTRKLSMTNE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    +  +LE  +  +     +P G+LRI    +LG  ++   +  F+  YP I
Sbjct: 61  GEDLFKRCRPLLEELENVEHSVTSRQSEPKGRLRITMPPELGIFIMNDAVSSFIKRYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI + L  + +D+  +  D A+R+   +  SSLI RK+   H H YA+  YL    EP +
Sbjct: 121 QIDIELSVRVVDLVEEGIDLALRVGD-LSDSSLIARKISDAHAHLYASQDYLDKYGEPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  I    L        NW    +     P    ++ N+        + G GI 
Sbjct: 180 PDDLINHQCIGI-KLNSTDWVFENW----NDGKPVPVNFRIRANNLTFCKDMLLNGLGIG 234

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +P+   ++      + +I+ +  TP+  ++  YP       K++ F + I  
Sbjct: 235 RIPNGFFEEELKTGEVKQILTEYRTPTVGIHALYPSRRHLNPKVRLFIDHIVE 287


>gi|91790042|ref|YP_550994.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699267|gb|ABE46096.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 322

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 134/297 (45%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D      VF  V   GSFT AA+ L  S ++++R I+ LE  +G +L  R +R L+LTE
Sbjct: 1   MDRLRAFEVFASVVSRGSFTRAADALDTSPANVTRYINELEAHLGTRLLNRSSRKLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+  +  +  ++   +     ++++P G+LRI   +  G   L      F+  YP+
Sbjct: 61  SGEALYERSKSILEEVAEAEALASSATLQPRGRLRINAPVSFGIRHLAPLWPLFMQAYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L ++ +DI  +  D AIR+ +   +S    RKL T      A+P YLK   +P 
Sbjct: 121 VELDIALSDRVVDIVEEGYDLAIRISRAGSASH-AARKLGTSRNIVCASPAYLKAHGQPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +         +++++    RP        +  N+  +  +  + G G+
Sbjct: 180 KPADLVGHRCLGY--TYAATANEWHFVDDAGRPHMVKVNYVMHANNGDTAREAAIAGQGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              P +++ D+     LV +M     P   V   YP     + K++   +F+    +
Sbjct: 238 IWQPAFLIGDDLKAGRLVALMPGYRMPDIDVLAVYPSRRHLSAKVRVMVDFLVEAFQ 294


>gi|116693447|ref|YP_838980.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737276|ref|YP_001778536.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116651447|gb|ABK12087.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169819464|gb|ACA94046.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 334

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 144/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLFECVTVASPDYLERHGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +I +L +H  + +     +     +W   +D    E ++   + VN   + +   + G G
Sbjct: 180 TIDDLGQHKAVNY--FSSRTGRTIDWTFLIDGKEVEMKMEGIVSVNDADAYVTCGIEGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V  +     L  ++  V      +   YP +   + K++ F ++I  
Sbjct: 238 LIQPPLFMVLPHLREGRLKEVLPGVKPLPMPISVVYPHSRHLSPKVRVFVDWIAE 292


>gi|149188267|ref|ZP_01866561.1| hypothetical transcriptional regulator [Vibrio shilonii AK1]
 gi|148837856|gb|EDL54799.1| hypothetical transcriptional regulator [Vibrio shilonii AK1]
          Length = 310

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 136/287 (47%), Gaps = 5/287 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D   VF  V  SGSFT AAE+   S S IS++++ LE  +G++L  R  R L LT +G 
Sbjct: 7   LDGYVVFVEVVDSGSFTFAAERTQHSTSYISKEVTKLEERLGVRLLQRTTRTLKLTPEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   +V    +  +  L  S ++PSG L+I   + LG + +     ++   YP + +
Sbjct: 67  NFYQHARDVVDAAQAAEESLSGSQIEPSGLLKITCPVALGLSTMSAIFTQYAQRYPKVTL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +K +DI     D AIR    ++ SSLI RKL T      A+P YL+    P +  
Sbjct: 127 DIDLSDKKVDIIEQGIDIAIRASDRLEDSSLISRKLFTDRGITVASPAYLQQYGTPRAPS 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  HN+I++     K  + + +             S + VNS    ++ C  G GI  L
Sbjct: 187 ELAHHNIISYS--YAKNNKRWVYEDLDGNEASVDITSRITVNSAKMELEMCKAGLGITRL 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P + +    +   L+ + +D       VY  YP     + K++AF++
Sbjct: 245 PRFYLGNELETGELIELFDDYPKHQLGVYMVYPSRKHMSAKVRAFKD 291


>gi|322830851|ref|YP_004210878.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166052|gb|ADW71751.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 313

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 136/289 (47%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              ++VF  VA   +FT AAE L L + S+SR +  LET +  +L +R  R + LT+ G 
Sbjct: 18  IQSMQVFVRVAELSNFTRAAESLGLPKGSVSRLVQQLETRMSARLLHRSTRRVQLTQDGQ 77

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   E+   ++  +   Q +    SG+LR+  T  +  +L+   L EFL  YP ++I
Sbjct: 78  VFYQRCKELLASMDELESMFQSNPASVSGRLRVDMTTGMATHLVLPRLAEFLNRYPALEI 137

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D+  +  DC IR    ++ S LI R L  + M   A+P YL+    P    
Sbjct: 138 ELSCTDHRVDVVREGFDCVIR-SGTLKDSGLIARPLGHLSMVNCASPGYLRRYGTPDHPD 196

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H ++ +  ++      F +L        +     + VNS  + +  C+ G GI  +
Sbjct: 197 QLAQHAMVHYEQILGSHTSAFEYLDGKQVKTVK-SGGAVTVNSTETYVSACINGLGIIQV 255

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V+D      LV I+     P   V   YP  L  + ++K F +++
Sbjct: 256 PLIGVRDALAGGQLVSILPQFRAPPMPVTLVYPHRLNLSRRVKVFMDWL 304


>gi|126659789|ref|ZP_01730916.1| transcriptional regulator [Cyanothece sp. CCY0110]
 gi|126618941|gb|EAZ89683.1| transcriptional regulator [Cyanothece sp. CCY0110]
          Length = 289

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/286 (29%), Positives = 137/286 (47%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V   GSF  AA ++ LS+S++++ +  LE  +G++L YR  R +T T  G   +
Sbjct: 1   MRAFTYVIEEGSFAAAARKMKLSRSAVNKLVINLENYLGVQLLYRTTRQVTPTATGQAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   LE  ++ + +   +P G L+I   +  G   L   + +F+  Y  I+IQL 
Sbjct: 61  ERCLEILSNLEEAELAVSQQQNEPLGSLKINAPMSFGITRLGTIIAKFMTRYSKIKIQLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ ID   +  D  IR+  P QS +L  RK+ TI     A+PHYLK    P  I EL 
Sbjct: 121 LEDRFIDPISEGYDLVIRIGSPPQSPNLFVRKITTIARVICASPHYLKTNGIPEKISELK 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ + +G L+      F +    +    E        N+   +    + G GI +LPD+
Sbjct: 181 QHSCLHYGYLLSGTQWQFIYQGKQENITIE---GSFCSNNGEVLRDAALQGLGIVILPDF 237

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IV    ++ +L  I+     P   +   YP     + K+K F  F+
Sbjct: 238 IVNQYLESGDLQIILSSYKIPELDLSIIYPINRHLSTKIKLFIEFL 283


>gi|322614536|gb|EFY11465.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620054|gb|EFY16926.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623349|gb|EFY20188.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629353|gb|EFY26132.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632073|gb|EFY28827.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637189|gb|EFY33891.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640302|gb|EFY36962.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645931|gb|EFY42451.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650083|gb|EFY46499.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652574|gb|EFY48924.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660384|gb|EFY56620.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664537|gb|EFY60730.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669410|gb|EFY65560.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670956|gb|EFY67089.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678805|gb|EFY74860.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681834|gb|EFY77859.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687960|gb|EFY83926.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194314|gb|EFZ79509.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197730|gb|EFZ82862.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203474|gb|EFZ88499.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206781|gb|EFZ91734.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213400|gb|EFZ98201.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214693|gb|EFZ99444.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221454|gb|EGA05870.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226228|gb|EGA10444.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229984|gb|EGA14104.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233723|gb|EGA17812.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238583|gb|EGA22641.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244271|gb|EGA28280.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246575|gb|EGA30550.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252185|gb|EGA36038.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258054|gb|EGA41733.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259848|gb|EGA43479.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265137|gb|EGA48636.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272700|gb|EGA56107.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 304

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL +H  + F + +         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ESVEELKRHLCLGFSEPVSLNTWP---IACRDGQLHEVECG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|107028510|ref|YP_625605.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686507|ref|YP_839754.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897674|gb|ABF80632.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652222|gb|ABK12861.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 305

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 142/296 (47%), Gaps = 10/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MEINDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYVRAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRIGS-LEDSTLIARPLGAWRMIACASPAYLKRHGTPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L  H  + +G           W   VD  +    +   L  N+   +    + G GI
Sbjct: 180 PADLAGHTCVLYGRE-----RRVGWEFRVDGAVRTFDVQGPLVANNGEVVRDAAIAGLGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP +IV    D+  LV +++  + P  T+   +P+  +    L+ F  F+  + 
Sbjct: 235 ALLPHFIVGAALDSGALVPVLDAYVPPPITLNAVFPQHREGFVTLRTFIGFLAERL 290


>gi|83859432|ref|ZP_00952953.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852879|gb|EAP90732.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 297

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 111/297 (37%), Positives = 174/297 (58%), Gaps = 2/297 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL+ F+  A  GS T AAE L LSQS++SRQIS LE E+G+KLF+RH RGL LTE 
Sbjct: 1   MDWDKLKTFHAAAEVGSLTGAAESLALSQSAVSRQISALEGELGVKLFHRHTRGLLLTEP 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   + +V  K+   +  + +   +PSG LR+     +G   L   L  F  L+P I
Sbjct: 61  GRVLFEASKDVAGKIALAEANVLDCRDEPSGLLRVTAPTAMGATWLAPRLARFNALFPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+L + ++DIS   AD A+R     Q+  LIQRKL+ +  H YA+  YL+    P S
Sbjct: 121 RVRLLLVDHELDISNLEADVALRPWAATQND-LIQRKLMVVDQHLYASDAYLERKGAPDS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGI 241
            ++LD+H+ + +G      + + NW   + R  G+ PR +  + ++   +M+    G G+
Sbjct: 180 FEDLDRHDFVGYGPRNLAPIPNLNWHLDLGREPGQKPREALAEASTIHGMMRLAEAGLGL 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             LPDY+ ++N  L R+ +++  P F VY  +PE L+ + ++KAFR+FI  + + W+
Sbjct: 240 VGLPDYVARENDRLKRLFDEIEGPPFEVYLIFPEELRASRRVKAFRDFIMEEVKLWR 296


>gi|159184411|ref|NP_353687.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159139724|gb|AAK86472.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 136/291 (46%), Gaps = 11/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L VF  VA SGS + AA++L  S + IS++I  LE ++G +LF R  R ++LTE G
Sbjct: 3   NLGDLEVFASVAASGSMSLAAKELGYSPAVISKRIKRLEEKLGARLFQRTTRQISLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     V   LE  +  +   +   +G L+++     G+  +  +LK F+  +PD+ 
Sbjct: 63  QGFYERVLAVLAGLEEAEDFVSGRANTVNGTLKVSAPTSFGRMHIAPHLKGFMERHPDLS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L ++ IDI     D AIR+   + SSSL+ R+L  +     A+  Y+     P +I
Sbjct: 123 VNLVLSDEFIDIIEGGYDLAIRIAD-LNSSSLVARRLAPVRRVLCASADYVVAHGMPATI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L KH  +      P    D   L      +       L  NS   I +  + G GIAL
Sbjct: 182 EDLKKHRCL------PAHNNDIWRLEGPGGALSIRPEGMLVTNSSEVIREAVISGLGIAL 235

Query: 244 LPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + +     +  LV+++     + + T+   YP       K++ F +++
Sbjct: 236 RSTWDIGHELRSGKLVQVLPGYEGSRNVTLSAVYPSRQFLPAKVRLFIDYL 286


>gi|332283398|ref|YP_004415309.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330427351|gb|AEC18685.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 339

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 143/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++VF  V  + SFT AA+ L L +S+++  I  LE  + ++L  R  R L+LT 
Sbjct: 1   MDRFQAMQVFTRVVDANSFTLAADSLGLPRSTVTTTIQSLERSLKLRLLNRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    ++   +E      ++ +  PSG+LRI T   +G+ +L   L +F   YPD
Sbjct: 61  DGAAYYERCVQILADIEDMDASFRDVTRGPSGRLRIDTPPSIGRLILVPALCDFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + + ++ +D+  D  DCAIR+   ++ SS++ R++ T      AAP YL+   EP 
Sbjct: 121 IELAIGMGDRIVDMVRDAVDCAIRVGD-LEDSSMVARRIGTFESITCAAPSYLEQHGEPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           SI++L  H+ + +     +     +W   VD      ++   + VN   + +Q  V G G
Sbjct: 180 SIEDLANHHAVHY--FSARTGRVIDWSFMVDGKSQNVQVKGSVSVNDAEAYVQCGVSGFG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     Y+V     +  L  I+ +   P   +   Y      + K++ F +++  
Sbjct: 238 LIQPSRYMVAPLLASGQLREILTEWTPPPQPISVVYLHNRHLSPKVRVFVDWVSE 292


>gi|205351587|ref|YP_002225388.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271368|emb|CAR36161.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326626615|gb|EGE32958.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 304

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR  + +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAGR-LTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L +H  + F + +         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ETVEQLKRHLCLGFSEPVSLNTWP---IACSDGQLHEVECG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|167554230|ref|ZP_02347971.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205321518|gb|EDZ09357.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 304

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +H  + F + +         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ETVEELKRHLCLGFSEPVSLNTWP---IACSDGQLHEIECG-ISSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|310824992|ref|YP_003957350.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398064|gb|ADO75523.1| Transcriptional regulator, LysR domain protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 313

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 147/293 (50%), Gaps = 8/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L VF  V ++GSFT AA  L + +S++SR++S LE  VG +L  R  R L LTE 
Sbjct: 21  MDLNELLVFAKVVQAGSFTLAARGLRMPKSTVSRKVSELEERVGAQLLQRTTRKLRLTEV 80

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  + E  ++ +      P G LR+   +    N +   L  FL  YP++
Sbjct: 81  GQAYYEHCARIVAEAEQAELAVTRMQSAPHGLLRVTAPLAF--NFMGSILAAFLTRYPEV 138

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI+++  ++ +D+  +  D A+R  +   SSSLI R+L +I     A+P Y++    P S
Sbjct: 139 QIEMVCTDRTVDLVEEGFDLAVRAGRLPDSSSLIARRLGSIERGVMASPRYIQERGAPKS 198

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H+ + FG      +     L + +R       + L VN    +    + G GIA
Sbjct: 199 PKELAAHDCLLFGVGTGGNVWS---LVSGNRSAEVSIRARLTVNEPDMLRAVTLAGFGIA 255

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLP+ +  ++     + RI+ +  +P  +V+  YP    ++ K+ AF +F+  
Sbjct: 256 LLPNSLYAEDIATGRMQRILPEWSSPGASVHALYPVTRHHSPKVMAFVDFLRE 308


>gi|107025370|ref|YP_622881.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|105894744|gb|ABF77908.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
          Length = 334

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 144/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLFECVTVASPDYLERHGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +I +L +H  + +     +     +W   +D    E ++   + VN   + +   + G G
Sbjct: 180 TIDDLGQHKAVNY--FSSRTGRTIDWTFLIDGKEVEMKMEGIVSVNDADAYVTCGIEGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V  +     L  ++  V      V   YP +   + K++ F ++I  
Sbjct: 238 LIQPPLFMVLPHLREGRLKEVLPGVKPLPMPVSVVYPHSRHLSPKVRVFVDWIAE 292


>gi|260574901|ref|ZP_05842903.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
 gi|259022906|gb|EEW26200.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
          Length = 301

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G NLL   L +FLL YPD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNLLSPILGDFLLEYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D AIR+   ++ SSL  RKL        A+P Y +    P+
Sbjct: 121 ITVNMVLNNRYVELISEGFDLAIRVGD-LEDSSLRARKLTETSKRMIASPSYFQRFGRPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L+ H L+ + +     +      +   R +    +  L VN   S++   V G GI
Sbjct: 180 KIDDLNDHKLLHYSNQANGNVWKITAPSGEKRQVRS--VGWLTVNDGQSLLNAAVSGLGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP ++  +      +   +  +   +  +Y  YP       K++AF +F+  +
Sbjct: 238 AYLPSFLCAEAMKAGQVEEAIPGLPVETLGIYAVYPPGRFTQPKVRAFIDFLARR 292


>gi|224582097|ref|YP_002635895.1| hypothetical protein SPC_0266 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224466624|gb|ACN44454.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 304

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +H  + F + +         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ETVEELKRHLCLGFSEPVSLNTWP---IACSDGQLHEIECG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|238913724|ref|ZP_04657561.1| hypothetical protein SentesTe_21687 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 304

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/299 (29%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL +H  + F + I         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ESVEELKRHLCLGFSEPISLNTWP---IACSDGQLHEIECG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|312960441|ref|ZP_07774950.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311285326|gb|EFQ63898.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 293

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 141/293 (48%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT AAEQL LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRLFCQVMESGSFTAAAEQLGLSKQFVSRRLIQLEDRLGVRLLNRSTRRLDITPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  +P + +
Sbjct: 64  SYYESALRLLGEVEQVEQGIAGQNSEPRGTLRLSAPLSFAMAHLGCLLPLFLQRHPQVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ S+LI R++ +I     A+P YL     P    
Sbjct: 124 EVDLSDRPVDLIGEGYDLVLRIG-TLEDSTLIARRIASIPRVYCASPEYLALRGTPHKPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +G           W     +         ++VN+   +    + G G+  L
Sbjct: 183 DLAEHDCLPYGH-----GRQVQWRFK-GKLQALNVSGRMRVNNGDLLRDTAIAGLGVTYL 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV D   +  LV I++D    + T+   YP+  +++  ++A  +F+  + 
Sbjct: 237 PTFIVGDALKDGRLVTILDDFAPEALTLSAVYPQHRQSSRPVQALVDFLRERL 289


>gi|113970123|ref|YP_733916.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113884807|gb|ABI38859.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 293

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 147/293 (50%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + +FT AA++L++S + +SRQI  LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAENFTLAAQRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  + +    P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAITDLKGSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   EP ++ 
Sbjct: 124 NVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGEPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELNQHNCLIGNHNYWRFIEN-------GRERNIKVRGNLICNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PDY ++++     L+  ++        ++  YP+    + K++   +++  K 
Sbjct: 236 PDYYIEEDIHAGRLISFLDAHREAKEGIWALYPQNRHLSAKVRVLVDYLAEKL 288


>gi|71280432|ref|YP_268039.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71146172|gb|AAZ26645.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 301

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 7/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V  +GS T AAEQ+++++S++S+++S LE ++GIKL  R  R  ++TE G 
Sbjct: 4   LEDMYIFLRVVETGSITKAAEQMNIAKSAVSKRLSLLEQKLGIKLINRTTRKSSITEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++ +  +  +++    +   S     G L IA  +  G   L   L  FL  + D+++
Sbjct: 64  RYYQRSKLIIDEVDELNSQTSSSKRALEGTLNIAVPLSFGLTHLAPALDLFLQQHSDLKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ IDI     D A R+ + + +SSL  RK+  I     A+P YLK   EP +  
Sbjct: 124 NINFSDQKIDIVEQGVDLAFRIGQ-LDNSSLQARKIAPIKHVLCASPEYLKLQGEPKTPN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H +I +G+L    ++  N          EP I     N+   +        GI  L
Sbjct: 183 DLKNHKVIKYGNLDQGGLKLLNKEGEEHIVHFEPHIIA---NNGDFLKSLAESNHGITYL 239

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P +IV  +     LV ++ D    S   Y  YP       K+++  +F+  +
Sbjct: 240 PSFIVWQSLATKKLVPVLADYKIESMHAYAVYPPNRHLPLKVRSLIDFLVER 291


>gi|209520272|ref|ZP_03269040.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499301|gb|EDZ99388.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 300

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 147/303 (48%), Gaps = 14/303 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D +R+F     + +FT AA +L LS+  +SR++  LE  +G++L  R+ R L +T+ 
Sbjct: 1   MQLDDMRIFVATVDAHNFTAAANRLSLSKQFVSRRVMALEEALGVQLLIRNTRKLAVTDL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++E  +  +      P G LR++  +  G   L   +  FL  + D+
Sbjct: 61  GQEFYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMTHLSPLVAAFLREHRDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +  + L ++ +D+  +  D AIR+   +  SSLI +KL+ + M A  +P YL+    P  
Sbjct: 121 RFDMELSDRAVDVIGEGFDMAIRIG-TLADSSLIAQKLIDVKMLACCSPGYLRRRGTPAV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +L KH+ + +G          +W  +VD  +    +   L+ N+   I    V G GI
Sbjct: 180 PADLAKHDCLLYGH-----GGAVSWEFSVDGALKSVEVRGPLRANNGDLIRDAAVAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF----LKA 294
             LPD+IV D   N  LV ++E  +  +  VY  YP+  +++  ++AF  F+      + 
Sbjct: 235 VRLPDFIVADALANGQLVPVLEAFLPAATGVYAVYPQHRQSSVTIRAFVEFLRKHLKKRL 294

Query: 295 RDW 297
            DW
Sbjct: 295 ADW 297


>gi|34496196|ref|NP_900411.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34102050|gb|AAQ58417.1| probable transcriptional regulator, LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 300

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 142/291 (48%), Gaps = 13/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            W+ ++ F  VA  GSFT AA +L +S + +SRQ+  LE  +G +L YR  R L+LTE G
Sbjct: 3   SWEGMQEFTAVADCGSFTRAARRLGISIAQVSRQVGQLEERLGARLLYRTTRQLSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   ++   L   +  + +    P G+L++   +  G + +   + +F+  YP ++
Sbjct: 63  ELYLAHCRQLLESLADAEQAVSQLQAAPQGQLKLTAPLAYGHSHISPLVLDFMQRYPLLE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+  D+  +  D AIR+ + +  SSL+ RKL     H  A+P YL  C EP   
Sbjct: 123 VSLDLSNQVKDLVHEGYDLAIRIGR-LTDSSLMARKLAQRRHHVCASPDYLARCGEPRRP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L +H  +  G+          W   V+      R+   ++ ++   + +  V G G+A
Sbjct: 182 QDLQRHQCLQIGNE--------GWHLQVNGRRQSVRVQGRMRCSTAAPLAEAAVRGMGLA 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY V    ++  LV ++ D   P   ++  YP   + + K++   +F+
Sbjct: 234 QLPDYYVSAYLESGALVEVLADYAEPEEGIWALYPHNRQLSPKVRLLVDFL 284


>gi|186472734|ref|YP_001860076.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195066|gb|ACC73030.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 296

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 149/294 (50%), Gaps = 8/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L++F     + +FT AA +L LS+  +SR++  LE  +G++L  R+ R L +T+ 
Sbjct: 1   MQLDDLKIFVTTVDARNFTAAANRLQLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++  + +  ++E  +  +      P G LR++  +  G   L   +  FL   PD+
Sbjct: 61  GYELYQRATRILGEVEDAEQAMTSGRSDPRGLLRVSAPMSFGMIHLSPLVAAFLRANPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +D+  +  D A+R+   +  S+LI +KL  I M A  +P Y K  R P +
Sbjct: 121 RVDMELSDRVVDVVGEGFDMALRIG-TLADSTLIAQKLAEIRMVACCSPAYRKARRPPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  + +G       E     A+    +  P    L+VN+   I    + G GIA
Sbjct: 180 PGDLARHACLLYGQEGRSGWEYMVDGASRTIEVHGP----LRVNNGEVIRDAAIAGLGIA 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP++IV +   +  LV ++ D ++P  T+Y  YP+  + +  ++AF  F+  +
Sbjct: 236 RLPEFIVAEALASGKLVEVLGDFVSPPLTLYAVYPQHRQASITIRAFTQFLRDR 289


>gi|254249791|ref|ZP_04943111.1| hypothetical protein BCPG_04665 [Burkholderia cenocepacia PC184]
 gi|124876292|gb|EAY66282.1| hypothetical protein BCPG_04665 [Burkholderia cenocepacia PC184]
          Length = 335

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 145/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 2   MDRLQAMQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 62  DGAAYYERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPD 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++  +     A+P YL+   EP 
Sbjct: 122 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLLECVTVASPDYLERHGEPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +I +L +H  + +     +     +W   +D    E ++   + VN   + +   + G G
Sbjct: 181 TIDDLGQHKAVNY--FSSRTGRTIDWTFLIDGKEVEMKMEGIVSVNDADAYVTCGIEGFG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V  +     L  ++  V      +   YP +   + K++ F ++I  
Sbjct: 239 LIQPPLFMVLPHLREGRLKEVLPGVKPLPMPISVVYPHSRHLSPKVRVFVDWIAE 293


>gi|28868993|ref|NP_791612.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213968678|ref|ZP_03396820.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301384592|ref|ZP_07233010.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061726|ref|ZP_07253267.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131367|ref|ZP_07257357.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852233|gb|AAO55307.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213926611|gb|EEB60164.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 301

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 140/293 (47%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPVFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDLVLRIG-VLEDSSLIARRIASIDRVYCASPTYLAERGTPQQPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  + +G                 +P+       ++ N+   +    + G GI  L
Sbjct: 183 DLHSHECLPYGHSRHVQWR----FQGTGKPVSLNVSGRMRANNGELLKDAALAGLGITYL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV D     +LVR+++++     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVGDALRAGSLVRVLDELRPEPLTLSAVYPQHRQASRPVQAFIEFLRERL 291


>gi|323494674|ref|ZP_08099777.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323311107|gb|EGA64268.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 289

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 13/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + +SR+IS LE  + +KLF R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAETQSFTAAASKLVTSVAQVSRRISSLEERLAVKLFNRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P G L++   +  G+  L   L +FL  +P + 
Sbjct: 63  QVYYQQCKHLVEGLELAELAVTQMQSTPKGLLKVTAPVTFGEQNLAPLLHQFLEQHPQVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L N+ +D+     D AIRL + +Q SSLI ++L +  ++  A+P YL    EP ++
Sbjct: 123 LDLMLTNQKLDLIEMGFDVAIRLGR-LQDSSLIAKRLSSRQLYVCASPDYLDRFGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
            EL  H  +              W     +     RIS  +  NS  +++     G G+ 
Sbjct: 182 SELSHHQCLVGSVDY--------WRFRDAKSEKSIRISGRIHCNSGYALLDAAKRGLGLV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD+ V+   D   LV ++ +       ++  YP+    + K++   +F+  
Sbjct: 234 QLPDHYVQQALDEGELVEVLTEYRDEREGIWALYPQNRNLSPKVRLLIDFLAE 286


>gi|119468826|ref|ZP_01611851.1| transcriptional regulator, LysR family protein [Alteromonadales
           bacterium TW-7]
 gi|119447478|gb|EAW28745.1| transcriptional regulator, LysR family protein [Alteromonadales
           bacterium TW-7]
          Length = 298

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 136/291 (46%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L++F  VA + + + A  +L LS    S  I  LE  +G+KL +R  R ++LTE+
Sbjct: 1   MNNEHLKLFVRVASTHNISSAGAELGLSPPVASMHIIKLEESLGVKLIHRTTRRVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      E+ + + + +  +   S  P G +R+A     G+  +   LK F+  +P++
Sbjct: 61  GREFLPHAEEILNAINSAKAAVGAGSFTPQGTIRVAAPSSFGRMHIVPALKAFIDQHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L   +  +D+     D AIR  + +  S+L+ RKL   H    A+P Y+    EP +
Sbjct: 121 KVDLRQSDSIVDMVEGGFDIAIRNAE-LNDSTLVARKLARDHRIICASPGYIAEHGEPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  HN I    +      D+    T +          +++++  SI   C+  +GI 
Sbjct: 180 PQDLLNHNCIKLIGI------DYWSFKTPNGIEKVKVKGSIRIDNGESIRDACINDAGIT 233

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNF 289
           +   +   +      LV+I++D    S   ++  YP +     K++AF +F
Sbjct: 234 ISSIWCAHNALKEGTLVQILKDYPMDSNAAIWAVYPSSRLLAPKVRAFIDF 284


>gi|253997145|ref|YP_003049209.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253983824|gb|ACT48682.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8]
          Length = 294

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 135/286 (47%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF      GSF+ AAE   ++ + +S+ I+ LE  +G  L  R  R   LTE G   +
Sbjct: 7   MEVFVSAVELGSFSAAAEVFKITPAMVSKHITALEQRLGATLLARTTRKQNLTEIGKNYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++   +   +     P G L++  +I  G   L   + ++L  YP++ I L 
Sbjct: 67  DNCKKILGQINDAEAGAEAMGSNPRGHLKVNASIWFGSLTLTPLVCDYLNQYPEVNISLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D AIR+ + ++ S+LI RKL    +   A+P+YL     P +  EL 
Sbjct: 127 LTDRYVDLVEEGFDVAIRIGE-LKDSTLIARKLSMFEVAICASPNYLAKAGTPTTPDELI 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KH  + F +   +       L          ++   + ++  +++   V G GI ++P  
Sbjct: 186 KHQCLGFTNWHHQGGWQ---LIQKQLGAKFEQVPRFESDNGQALLTAAVKGIGIIMMPKE 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++   ++ +LV +M D + P+  ++  YP   +   KL +F  F+
Sbjct: 243 LMRKDIESGHLVELMHDYLPPARPIHAVYPSERQLAPKLTSFVEFL 288


>gi|154252670|ref|YP_001413494.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gi|154156620|gb|ABS63837.1| transcriptional regulator, LysR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 310

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 138/296 (46%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   V+  V   G FT AA+ L LS+S +SR ++ LE E+G++L  R  R +++T
Sbjct: 1   MAVDLNGYAVYAKVVELGGFTAAADALGLSKSMVSRHVATLEDELGVRLLNRTTRRISVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  +      +  +      E         G LR+   +  G   L   + EFL  YP
Sbjct: 61  EAGGVVFERAQRIVAEAAEAANEATCVEGAVRGLLRVNAPMTFGIRQLGPVMPEFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L L+++ +D+  +  D ++R+   +  SSLI R+L  +  H   AP Y +    P
Sbjct: 121 DLNVDLTLNDRRVDLIEEGFDVSLRVSA-LTDSSLIARQLAPVERHIVGAPGYFEKHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  +L  H+ + +  L               R         +  N+  ++++    G+G
Sbjct: 180 KSPTDLAGHDFLLYTLLARPT--HLEMTHEDGRREQVEVKGRMFCNNADAMLETIAAGAG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +ALLPD+I  D+      VR++ED   P  T++  YP +     K++AF +F   K
Sbjct: 238 LALLPDFIGCDHMKSRAFVRVLEDWSMPPLTLHVLYPHSRHLPAKVRAFVDFAVEK 293


>gi|237799061|ref|ZP_04587522.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806204|ref|ZP_04592908.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021915|gb|EGI01972.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027317|gb|EGI07372.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 302

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 142/293 (48%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+E+L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASEKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +  +  ++E  +  +   + +P G LR++  +      L   L +FL  Y D+ +
Sbjct: 64  SYYESSLRLLAEVEQVEQGITGQNHEPRGTLRLSAPLSFAVAHLGCLLPQFLKRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDVVLRIGL-LEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G                 +         ++VN+   +    + G G+  L
Sbjct: 183 DLHAHDCLPYGHSRQVQWR----FQNAGKVTSLSVSGRMRVNNGELLKDAALAGLGVTYL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +I+     + +LVR+++D+     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIIGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFVEFLRERL 291


>gi|77458197|ref|YP_347702.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382200|gb|ABA73713.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 299

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 144/293 (49%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT AA+QL LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMDSGSFTAAADQLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E+ +  +   + +P G +R++  +      L   L  FL  Y ++ +
Sbjct: 64  SYYESALRLLGEVESVEQGIAGQTAEPRGAIRVSAPLSFALAHLGCLLPPFLQRYREVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ S+LI R++ +I     A+P YL     P+  +
Sbjct: 124 EVDLSDRPVDLLGEGYDLALRIG-VLEDSTLIARRIASIERVYCASPAYLAERGAPVRPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G         + + A   +P+       ++VN+   +    V G GI  L
Sbjct: 183 DLLGHDCLPYGH---GRSVQWRFNAGQGKPLLVNVTGRMRVNNGELLRDAAVAGMGITYL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV     +  LV ++++      T+   YP+  + +  ++A   F+  + 
Sbjct: 240 PTFIVGAALKDGRLVPVLDEFRPEPLTLSAVYPQHRQASRPVQALIEFLRERL 292


>gi|212710920|ref|ZP_03319048.1| hypothetical protein PROVALCAL_01989 [Providencia alcalifaciens DSM
           30120]
 gi|212686617|gb|EEB46145.1| hypothetical protein PROVALCAL_01989 [Providencia alcalifaciens DSM
           30120]
          Length = 318

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 136/295 (46%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  L +F  +   GS T AA+ LH+++S+IS+++  LE   GI+L  R  R L LTE G
Sbjct: 5   DYALLPIFIAIVEQGSLTKAADSLHMTKSAISKKLMALEASTGIRLITRSTRHLQLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    + +  ++     L   S    G L+I+     G   L   L EFL  +P + 
Sbjct: 65  ELYYAYLKKAHRAIDDGNAALSRYSGAVDGTLKISAPTVFGHLHLTALLPEFLKCWPQLN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +L+ D+K +D+  +  D AIR+ + ++ SSL+ R L   H    A+P +L+    P ++
Sbjct: 125 AELVFDDKLVDLVGEGFDMAIRIGE-LKDSSLVSRTLSPCHSVLCASPIWLEEHGSPQNL 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  HN + +            WL T    +         + N+ L++ Q  + G G+ 
Sbjct: 184 DELAGHNCLLYS----YYQAGQTWLFTHQGKMVRFTPTGNFRANNSLALHQAALQGLGVC 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LP +I   +     L+ ++ +   P   +Y  YP       K+ AF +F+  K 
Sbjct: 240 QLPQFIAAPDILAGRLITVLPEYHLPQHHIYAVYPNREFLPKKVSAFLDFLQEKL 294


>gi|83950856|ref|ZP_00959589.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
 gi|83838755|gb|EAP78051.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
          Length = 301

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 138/293 (47%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L  FL  +PD
Sbjct: 61  IGLAYYDRALRVLNDAGEADALVSSMQSDPSGLLRISVATDFGVNHLSPVLGSFLDEFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D AIR+ + ++ S+L  RKL        A+P YL+    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETTKRMIASPAYLEKYGRPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ +       +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNEHKLLHYSSQAGGSVWKLTAPSGEKRQVRT--AGGLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A LP ++  +  +  LV  ++ D+   +  +Y  YP       K++AF +F+ 
Sbjct: 238 AYLPSFLYSEALSKGLVEDVIPDLPMETQGIYAVYPPGRFTQPKVRAFIDFLV 290


>gi|330448282|ref|ZP_08311930.1| bacterial regulatory, Fis family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492473|dbj|GAA06427.1| bacterial regulatory, Fis family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 310

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +   V    +FT AAE+L +S+S +S+QI  LE  +G +L  R  R + LT
Sbjct: 1   MLDNLQQMVILAAVGHEQNFTRAAERLGISKSQVSKQIKCLEDRLGCQLVQRSTRTVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   +   +  +     + +G LRI      G   +   L EF    P
Sbjct: 61  EIGLQYADYGQQLIDTVSEAEAMVAGYRNEITGVLRIGIAQSFGNIHITSALAEFQKQNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++++ L +   ++  +  DC I + +      ++ RKL        A+P Y++    P
Sbjct: 121 NLELEISLFDHRPNLLEEGFDCWIAIHEH-PPEGMVARKLAKCEFVVVASPDYIEQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
               +L +HN IT+     K +   NW  + D      R+S   ++++  +++   V G 
Sbjct: 180 TVPGDLRQHNCITYESRERKYV---NWEFSRDGLKQSIRVSGNYRIDNAPAVLDAAVSGL 236

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIA L  Y++ D      LV ++ D  T     +Y  YP       K++ F +F+  +
Sbjct: 237 GIAYLSTYLLTDEIESNKLVTLLSDWQTTVDLPIYAVYPRRKYLAPKVRCFIDFMAER 294


>gi|325292046|ref|YP_004277910.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325059899|gb|ADY63590.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 299

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 135/291 (46%), Gaps = 11/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L VF  VA SGS + AA++L  S + IS++I  LE ++G +LF R  R ++LTE G
Sbjct: 3   NLGDLEVFATVAASGSMSLAAKELGYSPAVISKRIKRLEEKLGARLFQRTTRQISLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     V   LE  +  +   +   +G L+I+     G+  +  +LK F+  +PD+ 
Sbjct: 63  QGFYERVLAVLEGLEDAEDFVSGRANTVNGTLKISAPTSFGRMHIAPHLKTFMERHPDLS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L ++ IDI     D AIR+   + SSSL+ R+L  +     A+  Y+     P +I
Sbjct: 123 VNLVLSDEFIDIIEGGYDLAIRIAD-LNSSSLVARRLAPVRRVLCASAEYVTAHGMPATI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L KH  +      P    D   L      +       L  NS   I +  + G GIAL
Sbjct: 182 EDLKKHRCL------PAHNNDIWRLEGPGGALSIRPEGMLVTNSSEVIREAVISGLGIAL 235

Query: 244 LPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + +        LV+++     + + T+   YP       K++ F +++
Sbjct: 236 RSTWDIGHELRAGRLVQVLPSYEGSRNVTLSAVYPSRQFLPAKVRLFIDYL 286


>gi|331005724|ref|ZP_08329086.1| transcriptional regulator, LysR family [gamma proteobacterium
           IMCC1989]
 gi|330420477|gb|EGG94781.1| transcriptional regulator, LysR family [gamma proteobacterium
           IMCC1989]
          Length = 297

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 87/293 (29%), Positives = 143/293 (48%), Gaps = 9/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSF+  A  L +S S++SRQIS LE E+G +LF R  R  +LTE G    
Sbjct: 7   IELFVKVVEEGSFSAVARSLGISPSAVSRQISQLEKELGGRLFQRTTRKQSLTEAGEVYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   +E  ++ ++  + KPSG LRI    D     ++  L +FL LYP++QI L 
Sbjct: 67  QHALQLVEDIEVAKLAVRGLTDKPSGNLRITAEADFALAFIEPILPDFLALYPEVQICLH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+  +  D AIR+   ++ SSL  RKL        A+P YLK   EP   ++L 
Sbjct: 127 MSSNLQDLIDNNLDLAIRVGH-LRDSSLTARKLADSTSVVCASPAYLKKYGEPTHPRDLK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ ++F   +      F       +PI  P    L VNS   + +  + G GI L+P +
Sbjct: 186 SHSCLSFNTQLGSNYWRFE---AEQKPITVPVSGRLNVNSVSFLRKAALNGLGIILIPTW 242

Query: 248 IVKDNPN---LVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +++D      L+ +++D      S  +   +    +   K +A  NF+  + R
Sbjct: 243 VIRDELTQQHLIPVLQDFPLIPHSTPINAIFTHKRQLAPKTRALINFLSERIR 295


>gi|158340507|ref|YP_001521501.1| LysR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310748|gb|ABW32362.1| transcriptional regulator, LysR family [Acaryochloris marina
           MBIC11017]
          Length = 311

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 148/294 (50%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               ++ F  VA   SF  A+  L LS S++S+ ++ LE ++G+KLF+R  R ++LT  G
Sbjct: 3   SLSNIKTFVRVAEVESFARASNILGLSTSAVSKAVARLEADLGVKLFHRTTRSVSLTPDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    ++  + +    E+Q S   P G+L I+     G+  L   L+ F+  YP+I 
Sbjct: 63  KQFYEGCQQLLLEFDALTAEVQGSRATPRGQLTISAPAAFGRLCLVPLLQSFMQSYPEIT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + +D+  ID++    D  IR  +   S++LI  +LVT  +   A+PHYL    EP   
Sbjct: 123 LNISIDDHAIDLAAQGIDIVIRTGQLADSANLIASRLVTYRLVVCASPHYLAEHGEPQHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L +H+ + F +  P     F W+  +D  +    +S  L  ++  ++++  +   G++
Sbjct: 183 EQLQRHSCLNFRN--PDTGRFFPWVLEIDGAVESYTVSGPLVFDNADAVVRSSISSLGLS 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P ++ K+      LV ++     P   V+ CY +    + +++AF  F+  +
Sbjct: 241 QMPSFLAKEAVSRGQLVEVLNSYQPPETPVWICYLDRNFVSPRIRAFVEFMKSE 294


>gi|332533075|ref|ZP_08408945.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037554|gb|EGI74007.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 301

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 145/292 (49%), Gaps = 11/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V + GSF+ AA++L +S   +S+ IS LE  +  +L +R  R +++TE
Sbjct: 1   MDKLTTMKTFLAVVQEGSFSKAADKLDISPQLVSKYISALEDNLRTRLLHRTTRKVSVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++ ++   +V   +E  +  L   S   SG L I+  +  G   L G L +F   YP+
Sbjct: 61  AGNQYYQRCQQVIIDIEDMENSLNNLSESVSGVLSISAPMSFGTKHLAGLLVDFQKQYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +DI     D A+R+   +++S+LI +K+  IH+  +A+P YLK    P 
Sbjct: 121 LKLDLRLTDQYVDIVEQGIDIALRIG-VLKNSTLIAKKIAPIHLAVFASPDYLKRHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ +L  HN + +    P        L  V+    E ++ S    N+   ++   + G G
Sbjct: 180 TLLDLQSHNYLRYSHSEPTKR-----LFGVNELKSELKLESNFVANNGDLLLNTAIAGGG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IA+ P +I  +      +VRI++D       +Y  Y        K++AF +F
Sbjct: 235 IAMQPTFIAGEALAQGKVVRILKDHEPEPMGLYMVYANRQFLPSKVRAFVDF 286


>gi|269962763|ref|ZP_06177105.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832518|gb|EEZ86635.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 300

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 144/302 (47%), Gaps = 10/302 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D   +FY +   GSF+ AA Q+ L++S +S++I+ LE E+G++L YR  R L LTE G
Sbjct: 3   NTDDYIIFYHLVEQGSFSAAARQMELTKSVVSKRIAKLEQEIGVQLLYRTTRTLKLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    VY  + T +  +       SG ++I      G+ +L   + EF   YPDI 
Sbjct: 63  QSFFEHARSVYQAVATAEESIVGLGKSLSGNIKITVPTISGELILPTVISEFNQAYPDIN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + LDN+  DI  +  D AIR    +  SSLI RKLV  +    A+P ++    +P + 
Sbjct: 123 IDMELDNRFADIVNEGFDLAIRTG-VLPDSSLIARKLVDANWIVCASPRFVAKHGKPKTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L KHN + +        E   W    D  + + ++   L  N+  ++    +LG GI 
Sbjct: 182 DDLTKHNCLVYAYQETGACE---WAFKRDDEVYQVKVDGNLCTNNSSALRNVALLGQGII 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KARDW 297
            +P  +V ++     L+++ +D       +Y  YP   +   K+K F   ++   + R  
Sbjct: 239 YVPRVLVYEDLQQGKLIQLFKDETAKCLGIYAVYPYTRQQPEKIKIFIEHLYQCFQRRGH 298

Query: 298 KF 299
           +F
Sbjct: 299 QF 300


>gi|325521821|gb|EGD00551.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 334

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 145/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTSSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQNNNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLFEGVTVASPEYLERHGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           +I++L  H  + +     +     +W   +D    E +++ +  VN   + +   + G G
Sbjct: 180 TIEDLSDHKAVNY--FSSRTGRTIDWSFLIDGKETEVKMNGIVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V  +     L  ++  +      +   YP +   + K++ F ++I  
Sbjct: 238 LIQPPLFMVLPHLREGRLKEVLPGIKPLPMPISVVYPHSRHLSPKVRVFVDWIAE 292


>gi|172038666|ref|YP_001805167.1| LysR family transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171700120|gb|ACB53101.1| transcriptional regulatory protein, LysR family [Cyanothece sp.
           ATCC 51142]
          Length = 295

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 137/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +R F  V   GSF  AA ++HLS+S++++ +  LE  +G  L YR  R +T T 
Sbjct: 1   MDKFESIRAFTQVIEEGSFAAAARKMHLSRSAVNKLVINLENHLGASLLYRTTRQVTPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    E+   LE  ++ + +   +P G L+I   +  G   L   + +F+  Y  
Sbjct: 61  TGRAFYERCLEILSTLEEAELSVSQQHNEPQGNLKINAPMSFGIARLGEIIAKFMTRYSK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+IQL L+++ ID   +  D  IR+  P  S +L+  K+ T+     A+PHYL     P 
Sbjct: 121 IKIQLTLEDRFIDPISEGYDLVIRIGSPPNSPNLLVHKITTLSRVICASPHYLTTKGMPN 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H+ + +G LI      F      +R   E        N+   +    + G GI
Sbjct: 181 NLSDLKQHSCLHYGYLINGSQWQFIHQGKEERITVE---GFFCSNNGEVLRDAALQGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP++IV    +  +L  I  D   P   +   YP     + K+K F  F+
Sbjct: 238 VMLPNFIVDHYLERGDLQIIFPDYQIPELDLSIIYPINRHLSTKIKLFTEFL 289


>gi|170767711|ref|ZP_02902164.1| transcriptional regulator, LysR family [Escherichia albertii
           TW07627]
 gi|170123199|gb|EDS92130.1| transcriptional regulator, LysR family [Escherichia albertii
           TW07627]
          Length = 304

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 141/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +           +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTEPASLNTWP---IACCDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|24111639|ref|NP_706149.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 301]
 gi|30061760|ref|NP_835931.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 2457T]
 gi|110804255|ref|YP_687775.1| putative LysR type transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|24050411|gb|AAN41856.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 301]
 gi|30040002|gb|AAP15736.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 2457T]
 gi|110613803|gb|ABF02470.1| putative transcriptional regulator LYSR-type [Shigella flexneri 5
           str. 8401]
 gi|281599559|gb|ADA72543.1| putative transcriptional regulator LYSR-type [Shigella flexneri
           2002017]
 gi|313646735|gb|EFS11194.1| uncharacterized HTH-type transcriptional regulator yafC [Shigella
           flexneri 2a str. 2457T]
 gi|332754121|gb|EGJ84491.1| hypothetical protein SF274771_3936 [Shigella flexneri 2747-71]
 gi|332764632|gb|EGJ94862.1| hypothetical protein SFK671_0216 [Shigella flexneri K-671]
 gi|332768607|gb|EGJ98788.1| DNA-binding transcriptional regulator LYSR-type [Shigella flexneri
           2930-71]
 gi|333008980|gb|EGK28439.1| hypothetical protein SFK218_0464 [Shigella flexneri K-218]
 gi|333010748|gb|EGK30174.1| hypothetical protein SFK272_0570 [Shigella flexneri K-272]
 gi|333021247|gb|EGK40500.1| hypothetical protein SFK227_0229 [Shigella flexneri K-227]
 gi|333022171|gb|EGK41411.1| hypothetical protein SFK304_0329 [Shigella flexneri K-304]
          Length = 304

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|146308586|ref|YP_001189051.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576787|gb|ABP86319.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 317

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 143/293 (48%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D  ++  F  VA  GS + AA+QL +++S +S+++S LE  +G +L +R  R +  T
Sbjct: 14  MKLDIQEIETFLRVAELGSVSLAAQQLGVAKSVVSKRLSDLERNLGARLLFRSTRKVAPT 73

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G + +        +L++    +       +G LRI   +  G   L   L EF+  +P
Sbjct: 74  DSGQRFYHQAKAALAELQSAAEAVAFEDGSLAGSLRILAPMSFGTLWLAPRLAEFMRQHP 133

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L LD++  D   +  D  +R+ + +  S LI R+L +       +P Y++    P
Sbjct: 134 QLELALQLDDRVSDFEREGYDLCLRISR-LHDSVLIARRLGSSPRVVCCSPDYIREHGAP 192

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H  I + +L    +  F+  A   RP+          N+  ++    + G G
Sbjct: 193 GRLEQLLEHPCIGYCNLSAGQLWSFDDPADPQRPLTLAAGGRFTSNNGEAMRDAALAGLG 252

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP +IV+ +     LV+++ ++      ++  YP A + + K++A  +F+
Sbjct: 253 VAVLPRFIVQRDLQAGRLVQVLAEIRPTDDQIHALYPRARRASPKVQALCDFL 305


>gi|254475848|ref|ZP_05089234.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214030091|gb|EEB70926.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 304

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 107/288 (37%), Positives = 173/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 4   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEESLNSTLFHRHARGLILTEQ 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LE     +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 64  GELLFDATKSMSKRLEAASARIRDSEEEVFGELRVTTTFGFGTLWLAPRLTKLYEQYPDL 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+++ M  YA+ +Y++    P  
Sbjct: 124 KVDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMSVQMKLYASRNYVERNGMPEV 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+++  H LI      P+  +  +    V + +     S L VN+Y  ++Q  +   GI 
Sbjct: 183 IEDIGAHRLIC---QNPRSAQVGSAAVLVQKLMTHNPSSLLTVNNYFGVLQGVIHDLGIG 239

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P+LV ++ D  T    VY  YPE L+++ ++ AFR+F+
Sbjct: 240 VLPDYVTEDFPDLVPVLPDEDTSDVPVYLAYPEELRHSRRISAFRDFV 287


>gi|62178822|ref|YP_215239.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62126455|gb|AAX64158.1| putative transcriptional regulator, LysR family [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322713273|gb|EFZ04844.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 304

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +H  + F + +         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ETVEELKRHLCLGFSEPVSLNTWP---IACSDGQLHEIECG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKAIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|168819172|ref|ZP_02831172.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205344112|gb|EDZ30876.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320084505|emb|CBY94297.1| probable RuBisCO transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 304

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL +H  + F + I         +A  D  + E +   +  NS  ++ Q C+ G+G
Sbjct: 180 ESVEELKRHLCLGFSEPISLNTWP---IACSDGQLHEIKCG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|89052771|ref|YP_508222.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88862320|gb|ABD53197.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 301

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 139/298 (46%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LR++   D G N +   L EFL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTAMQSAPSGTLRVSIATDFGVNHVSPILGEFLHAFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D AIR+ + ++ SSL+ RK+        AAP Y +    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAIRVGE-LEDSSLMARKICETQRRMIAAPSYFEEYGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ + +        +   A             L VN   S++   + G GI
Sbjct: 180 RIDDLNEHKLLHYSN--SSAGNVWKITAPSGELRQVRTAGWLTVNDGQSLLNAAIGGLGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP ++  +      LV  M D+ T    VY  YP       K+++F +++    RD
Sbjct: 238 AYLPSFLYAEPLRQGLLVDAMPDLPTDVQGVYAVYPPGRYIQPKVRSFIDYLVEAFRD 295


>gi|66046836|ref|YP_236677.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257543|gb|AAY38639.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 302

 Score =  271 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 142/293 (48%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGS T A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAELEQVEQGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYRDVSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P + +
Sbjct: 124 EVDLSDRPVDVISEGYDVVLRIG-VLEDSSLIARRIASIDRVYCASPAYLAERGTPQNPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G                D+P+       ++ N+   + +  + G GI  L
Sbjct: 183 DLHTHDCLPYGHSRQAQWR----FQGQDKPLTLNVSGRMRANNGELLRESAIAGLGITYL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV       +LVR+++D+     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVGAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFLRERL 291


>gi|84684743|ref|ZP_01012643.1| transcriptional regulator, LysR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667078|gb|EAQ13548.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 301

 Score =  271 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 107/291 (36%), Positives = 170/291 (58%), Gaps = 4/291 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + L+LSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDALNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATRAMVQRLDAAVARIRDSKEEVFGELRVTTTTGFGSLWLAPRLAKLYEQYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIRL++P Q+  LI++KL+ ++M  YA   YL     P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRLKEPSQAD-LIRKKLMGVNMRLYATHAYLDAHGRPER 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L KH +I       +      +   +   +     S L VN+Y  ++Q  + G GI 
Sbjct: 180 MEDLSKHRIICQNTNSAQVSAGATFTQEI---LTHNVDSLLTVNNYFGVLQAVLNGLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +LPDYI++D P + R++ +  +    V+  YPE L+++ ++ AFR+F+  +
Sbjct: 237 ILPDYILQDFPEIERVLPEEESREIPVFLAYPEELRHSKRIAAFRDFVTEE 287


>gi|192359439|ref|YP_001984195.1| transcriptional regulator [Cellvibrio japonicus Ueda107]
 gi|190685604|gb|ACE83282.1| transcriptional regulator [Cellvibrio japonicus Ueda107]
          Length = 300

 Score =  271 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 143/296 (48%), Gaps = 5/296 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + +F  VA   SFT AA+ L L ++S+S  +  LE+ +G +L  R  R + LT+ G 
Sbjct: 4   LDAMLMFVRVAELASFTKAADSLGLPKASVSTGVQQLESLLGARLLQRTTRRVQLTQDGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   +E  +   Q+ +   SG+LR+     L +N++   L  FL L+P +Q+
Sbjct: 64  VFYERARDLLADMEDLEGLFQQGASNLSGRLRVDMPNGLAKNIVLPRLPAFLALHPQLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D+  +  DC IR+ K +  SSLI R L  + +   A+P YL +   P ++ 
Sbjct: 124 EISSTDRRVDVIREGFDCVIRVGK-LSDSSLIARPLGKLKLLNCASPAYLASHGSPHTLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+ +   +      F ++   +          + VN+  +    C+ G GIA +
Sbjct: 183 DLAQHQLVHYVTTLGARSAGFEYVQEGETHCIA-MGGNITVNNSDAYSAACLAGVGIAQI 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P   V+    +  LV I+ D    +  V   YP       +++ F +++  + RD+
Sbjct: 242 PRIGVQPYLADGRLVEILPDYCAEAMPVSLIYPARRHLPRRVQGFMDWVSEQLRDY 297


>gi|77463507|ref|YP_353011.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77387925|gb|ABA79110.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
          Length = 297

 Score =  271 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 107/296 (36%), Positives = 171/296 (57%), Gaps = 4/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLNVTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+++  +LE     +++S  +  G+LR+ TT   G   L   L      YP +
Sbjct: 61  GELLFEATNQMVKRLEAAAARIRDSEDEVFGELRVTTTTGFGTLWLAPRLVGLYKKYPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L++I M  YA+P Y      P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMSIRMRLYASPTYAAEHGMPEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++  +H LI     +P   +     A V   +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 MEDFAQHRLIC---QLPGAPQVAAGAALVQELMSNDIPSMLTVNNYFGVLQAVLNNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           ++PDY+    P L+R++ DV +    V+  YPE L+++ ++ AFR F+  +   ++
Sbjct: 237 VMPDYLAVAFPQLIRVLPDVESNDVPVFLAYPEELRHSKRVAAFREFVMEEISLYR 292


>gi|260433849|ref|ZP_05787820.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417677|gb|EEX10936.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 302

 Score =  271 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 108/289 (37%), Positives = 173/289 (59%), Gaps = 5/289 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WDKLR+F+ VA +GS THA ++L+LSQS++SRQI  LE  +G  LF+RHARGL LTEQ
Sbjct: 1   MNWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEEALGATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+ +  +LET    +++S  +  G LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFEATTAMSKRLETAAARIRDSEEEVFGVLRVTTTFGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-REPL 181
            I L+L+ + +D+ M  AD AIR+++P Q   L++++L+T+ M  YA   YL +    P 
Sbjct: 121 NIDLMLEERVLDLPMREADVAIRMKEPSQVD-LVRKRLMTVRMILYATKAYLDSHGGAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++++ KH LI      P+       ++ +   +     S L VN+Y  ++Q  +   G+
Sbjct: 180 TLEDISKHRLICQNPAAPQVGVGARMVSHL---MAYEPSSLLTVNNYFGVLQAVLNNLGL 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPDY+ +D P+LV ++ D+ T    VY  YPE L+++ ++ AFR+F+
Sbjct: 237 GVLPDYVTEDFPDLVPVLSDIETADVPVYLAYPEELRHSKRVAAFRDFV 285


>gi|326796629|ref|YP_004314449.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326547393|gb|ADZ92613.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 298

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 144/294 (48%), Gaps = 13/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  V R GSF+ AA +L +S S ISR ++ LE+E+G  L +R  R + L+E G
Sbjct: 3   NWEAMEAFVEVVRQGSFSAAAIKLSVSASHISRLVTQLESELGSTLLFRTTRRIRLSEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   L + +  +   +  P G  ++      G+  +   + +FL  +P I+
Sbjct: 63  ELYYQHCRGLPAALSSAEEVISSLNQAPIGSFKMTCATTFGERYIAPVMNDFLTTHPKIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ +D+  +  D AIR+   ++ SSL+ R+L        A+  Y+     P ++
Sbjct: 123 LDLHLTNRAVDLIEENYDLAIRMGA-MKDSSLLSRRLCDRQEFLCASREYIDQYGMPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL+KH  +             +WL   +    E ++S   + NS L+++     G GIA
Sbjct: 182 SELNKHKCLI--------GSKNHWLFQQNGQRKEVKVSSQWRSNSGLALLDAVKKGLGIA 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LPDY V+   D+  LV ++     P   V+  YP++   + KLKA  +F+  +
Sbjct: 234 QLPDYYVRKEFDSGRLVPLLSQYQYPYSGVWLVYPKSQTPSPKLKAVCDFLIHR 287


>gi|237807187|ref|YP_002891627.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237499448|gb|ACQ92041.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 309

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 135/287 (47%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++  +GS + AA +L+L+  ++S++++ LE  +G++L  R  R   +T +G   
Sbjct: 6   ELEFFSILINAGSLSAAAGELNLTPPAVSKRLAQLEARLGVRLLNRSTRHFNITPEGEIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +   + E+     KP G LRI TT   G+N +   +  FL  YP++++QL
Sbjct: 66  LNRCRQIIQDINAMEQEVLSLRAKPKGLLRINTTPGFGRNYIARAISAFLKQYPEMEVQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD+   D +    D  +R   P   S+++ RK++T      A+P YL+N  +PL   +L
Sbjct: 126 TLDSNQPDPTSGDFDIGVRFGLP-PDSNIVARKIMTNRRFVCASPLYLRNNPQPLVPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            KHN I                   D          L  N    +  + + G GI +  +
Sbjct: 185 AKHNCIVLKQDESASGIWR--FKRGDSSETVKVRGTLSSNDGEVVANWALEGHGILIRAE 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + V     +  LVR++ED   P+  +Y  YPE    + K++ F +F+
Sbjct: 243 WDVNKYLQSGRLVRLLEDYELPAADIYVVYPERHYLSAKVRVFIDFL 289


>gi|167582781|ref|ZP_02375655.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 296

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F   A + SF  A  +L +S S+I + I+ LE  +G++LF+R  R +TLT++G
Sbjct: 3   NLNGIVAFVRTAETLSFVAAGRKLGVSASAIGKTIAKLERSLGVRLFHRTTRKVTLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H        +L   Q  L +S+  P G+LR++  + +G   L   L EF   YPD++
Sbjct: 63  RHFHERCHRALEELRDAQAALSQSAQTPRGRLRVSLPV-IGYRFLLPVLPEFKRRYPDVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR    +  SSL+ R+L        A+P YL     P ++
Sbjct: 122 LDLDFNDRLVDVVEGGFDAVIR-SGTLSDSSLMSRRLGPFSFLLCASPAYLARAGAPRTL 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H  + +    P   +   W    D        + +  N+  ++      G GI  
Sbjct: 181 RELGAHACVRY--RFPTTGKLQPWALLPDGGEPPNLHTTMTCNNMEALRAAVTAGFGIGY 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++ +D   +  LV +++            +P   + + K++ F +F+  + 
Sbjct: 239 MPDFLARDALADGALVTVLDAYRIGPGQFSILWPSNRQLSPKVRVFVDFVCERL 292


>gi|119898858|ref|YP_934071.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119671271|emb|CAL95184.1| putative LysR-family transcriptional regulator protein [Azoarcus
           sp. BH72]
          Length = 335

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 146/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++VF  V  + SF+ AA+ L L +++++  I  LE  + ++L  R  R L+LT+
Sbjct: 1   MDRFQAMQVFTRVVDANSFSRAADSLGLPRATVTNIIQNLERLLQVRLLNRSTRRLSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   ++++  P G+LRI     LG+ +L   L +F   YP+
Sbjct: 61  DGAAYYERCVAILADVEETESSFRDAASGPRGRLRIDVPASLGRLVLIPRLCDFHTRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I + + ++ +D+  +  DCA+R+   +  SSL+ R++ T  +   AAP YL+   EP 
Sbjct: 121 LEIAIGMTDRPVDMVREAVDCALRVGH-LPDSSLVARRIGTFFLVTCAAPSYLERHGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +I EL  H+ + +   +       +W   VD  + E ++   + VN   + +   + G G
Sbjct: 180 TIAELANHSAVNYFSSL--NGRTLDWDFVVDGHVTEVKMKGVVSVNDGDAYLACALQGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  +P ++     ++  L  ++         +   YP     + K++AF +++  
Sbjct: 238 MVQMPRFMALPHLESGALREVLPQWSPAPMPISAVYPANRHLSPKVRAFVDWVAE 292


>gi|237730191|ref|ZP_04560672.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226905730|gb|EEH91648.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 304

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL++H  + F + +         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ESVEELNQHLCLGFSEPVSLNTWP---IACSDGQLHEVECG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|126462363|ref|YP_001043477.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|221639368|ref|YP_002525630.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|332558387|ref|ZP_08412709.1| Transcriptional regulator, LysR family protein [Rhodobacter
           sphaeroides WS8N]
 gi|126104027|gb|ABN76705.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221160149|gb|ACM01129.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
 gi|332276099|gb|EGJ21414.1| Transcriptional regulator, LysR family protein [Rhodobacter
           sphaeroides WS8N]
          Length = 297

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 171/296 (57%), Gaps = 4/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLNVTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+++  +LE     +++S  +  G+LR+ TT   G   L   L      YP +
Sbjct: 61  GELLFEATNQMVKRLEAAAARIRDSEDEVFGELRVTTTTGFGTLWLAPRLVGLYKKYPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L++I M  YA+P Y      P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMSIRMRLYASPTYAAEHGMPEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++  +H LI     +P   +     A V   +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 MEDFAQHRLIC---QLPGAPQVAAGAALVQELMSNDIPSMLTVNNYFGVLQAVLNNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           ++PDY+    P L+R++ D+ +    V+  YPE L+++ ++ AFR F+  +   ++
Sbjct: 237 VMPDYLAVAFPQLIRVLPDIESNDVPVFLAYPEELRHSKRVAAFREFVMEEISLYR 292


>gi|325982030|ref|YP_004294432.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212]
 gi|325531549|gb|ADZ26270.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212]
          Length = 303

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  VA +GSF  AA ++++S++++S+ ++ LE ++  +LF R  R L+LTE G
Sbjct: 3   DLNLLIIFARVAEAGSFAEAARRMNISRAAVSKAVAKLEKDLSTRLFLRSTRHLSLTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    + +  + E  +  +     +P G L+++ +   G   +   L  FL  YP I+
Sbjct: 63  TTLSEHANRILEESEHAERAINSLHAEPRGVLKVSVSSSFGTRHIAPALPCFLTRYPKIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +   D+  +  D  IR+       +L+ RK+  +     A P Y +    P + 
Sbjct: 123 IDLTITDHPGDLVEEGYDVQIRVTNE-PDLNLVARKIAPVRRILCATPQYFQQWGMPKTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L+KHN +   D      + +   +     I  P    L++N   ++ Q  + G GIAL
Sbjct: 182 EDLEKHNCL---DCALSVEQGYWRFSGPTGKIKVPISGTLRINDNDALAQAALHGLGIAL 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP Y +        L   + + ++    +Y CY  +     K++AF NF+  
Sbjct: 239 LPTYTIGMELQKGRLQVALPEYLSVERHIYACYLPSRHLPIKIRAFINFLAE 290


>gi|83644160|ref|YP_432595.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632203|gb|ABC28170.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 329

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 143/294 (48%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++++++  V  +GS T AA+ L +++S++SR+++ LE  +G++L  R  R LTLTE G 
Sbjct: 4   FEEMQIYAKVVETGSITRAAQVLDIAKSAVSRRLADLEARLGVQLLVRTTRKLTLTETGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L   +  +       SGKL+IA     G   L     +F+ ++P++  
Sbjct: 64  SYYERCLRLLEDLAELEESVTSEHKSLSGKLKIAAPFTFGMMHLGCVFNDFMQMHPNLNF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  +++ +DI  +  D AIR+ + +  S+LI R +  IH    A+P YL+   EP + +
Sbjct: 124 DINFNDRQVDIVQEGYDLAIRIGR-LVDSTLIARPICKIHTVICASPAYLEKFGEPKTPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H +I + +L       +N  +        P    LQ N+   + Q  V G GI   
Sbjct: 183 ELTQHRVIHYSNLPNSIWRFWNSKSECIEVNVNP---WLQANAGDYLRQAAVNGYGIVTQ 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P++I+     +  L  I+ D        Y  YP     + +++ F +++  + +
Sbjct: 240 PNFILYKEIASGALKPILTDYQLVEANAYLIYPHTRHLSHRVRTFVDYVLERFK 293


>gi|110680412|ref|YP_683419.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109456528|gb|ABG32733.1| transcriptional regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 301

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 106/288 (36%), Positives = 175/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+ +  +L+T    +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATAAMTRRLDTAFARIRDSEEEVFGELRVTTTTGFGTLWLSPRLPKLYERYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q+  LI++KL+ + M  YA P YL +   P +
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKKLMMVRMCLYATPDYLADHAAPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++E+  H LI       +     + +  +   + +   S L VN+Y  ++Q  +   GI 
Sbjct: 180 LEEIKDHRLICQNTDSDQVGAGRSLVQHL---MTQNIRSMLTVNNYYGVLQGVLQNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P+LV+++ D+ +    V+  YPE L+ + ++ AF++F+
Sbjct: 237 VLPDYVTEDFPDLVQVLPDLTSADVPVFLAYPEELRQSQRVSAFKDFV 284


>gi|59711256|ref|YP_204032.1| LysR family DNA-binding transcriptional regulator [Vibrio fischeri
           ES114]
 gi|59479357|gb|AAW85144.1| predicted DNA-binding transcriptional regulator, LysR family
           [Vibrio fischeri ES114]
          Length = 290

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 149/298 (50%), Gaps = 13/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ +  F  VA + SFT AA  L  S + ISR+++ LE  + IKL  R  R +++TE 
Sbjct: 2   IDWEGVTEFVAVAEAQSFTGAARALDTSVAQISRKVAALEDRLSIKLLIRTTRKVSVTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +   L+     + E +  P G+L+I +++  G+ L+   L +F+L+YP +
Sbjct: 62  GQTYYQHCRHLVEGLKQADRAITELNATPQGRLKITSSVTYGEQLIAPLLSDFMLMYPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+L N+ +D+     D AIRL + +  S+++ ++L +  +   A+P Y++   EP +
Sbjct: 122 ELELVLSNQTLDLVEQDFDLAIRLGR-LTDSTMMAKRLSSRQVRVCASPSYIEKHGEPHT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + EL +HN +     I        W    ++     R+   +  NS  ++    + G GI
Sbjct: 181 LSELSQHNCLVGSLPI--------WRFIENKKEKSVRVKGSVHCNSGAALTNAALKGLGI 232

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LPD+ V+++     LV I+     P   ++  YP     + K++    F+  +  +
Sbjct: 233 VQLPDFYVQESMDKGELVEILVPYREPKEGIWAVYPNNRHLSTKVRLLVEFLAQELAE 290


>gi|30249514|ref|NP_841584.1| transcription regulator LysR [Nitrosomonas europaea ATCC 19718]
 gi|30138877|emb|CAD85455.1| Bacterial regulatory protein, LysR family [Nitrosomonas europaea
           ATCC 19718]
          Length = 305

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +  F  V  +GS + AA+++ +++S +SR++  LE  +G++LF+R  R + LT+
Sbjct: 1   MDRFENMNAFVRVVETGSISAAADRMDIAKSVVSRRLKELEEHLGVELFHRTTRQMNLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++ +  +   +   +    +   +  G L++A  +  G   L   +  FL  +PD
Sbjct: 61  SGRAFYQQSVRILADVLEAEHATSQFHGRLKGHLKVAVPLSFGLMHLGAAISTFLQTHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+  L  +++ +D+  +  D AIR+   +  SSLI R+L  I     A+P YL+    P 
Sbjct: 121 IEFDLDFNDRQVDLLAEGFDLAIRIAN-LPDSSLIARRLAPIQAVMCASPAYLERMGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +EL +H  + +   +    +++N   T    I    I  L+ ++   +    V G GI
Sbjct: 180 APEELIRHRCLVYN--LVSHSDNWNVYGTTGELIKTRIIPYLKASNGEFLRDAAVDGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LLP +IV        L+ I+          Y  YP+    + +++AF +F+  +
Sbjct: 238 VLLPTFIVYREIQRGALIPILTGYHYAQLAAYAIYPQTRHLSQRVRAFVDFLSQR 292


>gi|99082300|ref|YP_614454.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038580|gb|ABF65192.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 301

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 140/298 (46%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L +FL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ SSL  RKL        AAP YL+    P 
Sbjct: 121 ITVNMVLNNRFVELISEGFDMALRIGE-LEDSSLRARKLTETTKRMVAAPEYLEKYGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ + +     +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNEHKLLHYSNQSSGNVWKLTAPSGEKRQVRS--TGWLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKDNPN--LVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP Y+  +     LV  +M  +   +  +Y  YP       K++AF +F+     +
Sbjct: 238 AYLPSYLYAEAKAEGLVEDVMPSLPVETLGIYAVYPPGRFTQPKVRAFIDFLVHAFAE 295


>gi|87121801|ref|ZP_01077687.1| putative transcription regulator protein [Marinomonas sp. MED121]
 gi|86162830|gb|EAQ64109.1| putative transcription regulator protein [Marinomonas sp. MED121]
          Length = 300

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 136/294 (46%), Gaps = 10/294 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             +    L VF  V   GSF  AAE L+LS++++S+ I+ LE E+   L  R  R L +T
Sbjct: 4   KMNKIRALTVFRRVVELGSFKGAAEDLNLSKAAVSKNINELEEELQSPLINRTTRKLHIT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++    V   L+     + ES     G L+I+  + LG   +   + +F+  +P
Sbjct: 64  ESGRLYYQQVCHVLDCLKNADQSIIESLNTLKGTLKISVPMSLGIIEINPIIFDFMAEHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ +++++++K +D+     D +IR    +  SSL  RKL  +     A+P YL    + 
Sbjct: 124 DLHVEVVMNDKYVDLIEQEIDISIRGGGVLNDSSLRSRKLTDMKRVLCASPDYLAQASKL 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLG 238
            S  +L  HN + +       +    WL   +  + E  +       N+ L + Q   LG
Sbjct: 184 NSPDDLVDHNCLIYSF----SLSARRWLFKYNDQVKEVELTQGSFIANNGLVLKQAACLG 239

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GI LLPD  V    +   LV ++        ++Y  YP   + + K++AF +F
Sbjct: 240 HGIVLLPDLFVNNEIEQGQLVEVLPQWSADKHSLYLVYPFHKEKSHKIRAFIDF 293


>gi|197335382|ref|YP_002155407.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197316872|gb|ACH66319.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 290

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 149/298 (50%), Gaps = 13/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ +  F  VA + SFT AA  L  S + ISR+++ LE  + IKL  R  R +++TE 
Sbjct: 2   IDWEGVTEFVAVAEAQSFTGAARALDTSVAQISRKVAALEDRLSIKLLIRTTRKVSVTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +   L+     + E +  P G+L+I +++  G+ L+   L +F+L+YP +
Sbjct: 62  GQTYYQHCRHLVEGLKQADRAITELNATPQGRLKITSSVTYGEQLIAPLLSDFMLMYPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+L N+ +D+     D AIRL + +  S+++ ++L +  +   A+P Y++   EP +
Sbjct: 122 ELELVLSNQTLDLVEQDFDLAIRLGR-LTDSTMMAKRLSSRQVRVCASPGYIEKHGEPHT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + EL +HN +     I        W    ++     R+   +  NS  ++    + G GI
Sbjct: 181 LSELSQHNCLVGSLPI--------WRFIENKKEKSVRVKGSVHCNSGAALTNAALKGLGI 232

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LPD+ V+++     LV I+     P   ++  YP     + K++    F+  +  +
Sbjct: 233 VQLPDFYVQESMDKGELVEILVPYREPKEGIWAVYPNNRHLSTKVRLLVEFLAQELAE 290


>gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151280913|gb|ABR89323.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 309

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 146/308 (47%), Gaps = 17/308 (5%)

Query: 1   MSFDWDK-----LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M  ++D      + +F + A +GSFT AA    ++ +++SR IS LE  +G++LF R  R
Sbjct: 1   MQRNFDDVLLGSIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G        E   +L   + ++    +KP+G LRI+     G   L   L EF
Sbjct: 61  QIRLTDGGRVYFEQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YPD+Q+++ + N++ID + +  D AIR R P   S+LI RKL    +   AAP YLK
Sbjct: 121 RQRYPDVQVEVHISNRNIDFAEEAYDLAIRGRAP-TDSNLIARKLEEAELVLVAAPSYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ------VNSYL 229
              +P ++++L KH  I F   +P       W+   +  +    +  +           L
Sbjct: 180 RAGKPKTLEDLQKHECIQFE--LPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDVL 237

Query: 230 SIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            I+     G+G+     +IV+D+     LV ++      S      YP A   + +++AF
Sbjct: 238 GIVTLARSGAGLVQTYRFIVEDDLREGRLVELLPQFGATSRPFILLYPHARHLSSRVRAF 297

Query: 287 RNFIFLKA 294
            +F+  K 
Sbjct: 298 VDFLMEKL 305


>gi|91778887|ref|YP_554095.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691547|gb|ABE34745.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 296

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 142/296 (47%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D +R+F     + +FT AA +L LS+  +SR++  LE  +G++L  R+ R L +T+ 
Sbjct: 1   MQLDDMRIFVATVDARNFTAAANRLSLSKQFVSRRVMALEETLGVQLLIRNTRKLAVTDL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++E  +  +      P G LR++  +  G   L   +  FL  + D+
Sbjct: 61  GQEFYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMAHLSPLVAMFLREHGDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++ L ++ +D+  +  D AIR+   +  S+LI +KLV I + A  +P Y++    P  
Sbjct: 121 RFEMELSDRTVDVVGEGFDMAIRIGA-LPDSTLIAQKLVDIRVVACCSPGYVRRRGAPAV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L++H  + +G       +            G      L+ N+   +    V G GI 
Sbjct: 180 PADLERHACLLYGHGGAVSWD----FVVDGVTKGVDVHGPLRANNGELVRDAAVAGLGIV 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LPD+IV D   +  LV ++ED +    +VY  YP+  +++  ++AF  F+    R
Sbjct: 236 RLPDFIVADALRSGQLVPVLEDFLPTVTSVYAVYPQHRQSSLTIRAFVEFLREHLR 291


>gi|237809885|ref|YP_002894325.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237502146|gb|ACQ94739.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 303

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 138/301 (45%), Gaps = 9/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L     V  SGSF  AA++LH S++++SR I  LET +G++L  R  R + LTE
Sbjct: 1   MDRLRNLTALIAVVESGSFVAAAQRLHSSKAAVSRYIQELETYLGVRLLQRSTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++ T ++   L+        ++ +  G +R+   +  G   L     EF+   P 
Sbjct: 61  AGRDYYQRTKQILADLDDADSAAGANNSRLIGNIRVNAPLSFGTRYLAPLWAEFMERNPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + L ++ ID+  +  D AIR+   +  S+L+ R+L   H    AAP Y++    P 
Sbjct: 121 VTLDIELTDRRIDLLDEGFDLAIRIGN-LADSTLVSRRLADSHAVLCAAPAYVEKHGLPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L +H +I+F  L    +  F   +  +R I       +  N+  +I    + G GI
Sbjct: 180 TPEALTQHQVISFSYLPSGDVWHFQSASGEERAISLK--PRMHTNNGDTIRAVVLAGQGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--D 296
           AL P + +        L  I+     P+F ++  YP     + K+K   +++  K    D
Sbjct: 238 ALQPIFEISPELQEGKLQTILPGWFGPTFGIHAVYPSRKNLSLKVKTLIDYLAEKLAGTD 297

Query: 297 W 297
           W
Sbjct: 298 W 298


>gi|330972303|gb|EGH72369.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 313

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 140/298 (46%), Gaps = 9/298 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  + ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L  
Sbjct: 10  MPMNPFEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDA 69

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G   +     +  ++E  +  +   S +P G LR++  +      L   L +FL  Y
Sbjct: 70  TPLGQSYYESALRLLAEVEQVEQGITGQSSEPRGTLRLSAPLTFAVAHLGCLLPQFLQRY 129

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            D+ +++ L ++ +D+  +  D  +R+   ++ SSLI R++  I     A+P YL     
Sbjct: 130 RDVAVEVDLSDRPVDVISEGYDLVLRIG-VLEDSSLIARRIAAIDRVYCASPGYLAERGT 188

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PL  ++L +H+ + +G                 +         ++VN+   +    V G 
Sbjct: 189 PLEPEDLHQHDCLPYGHSRQVQWR----FQGAGKASSLNVSGRMRVNNGELLRDAAVAGL 244

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  LP +IV       +LVR+++D      T+   YP+  + +  ++ F  F+  + 
Sbjct: 245 GITYLPTFIVGAALRAGSLVRVLDDRRPEPLTLSAVYPQHRQASRLVQMFIEFLRERL 302


>gi|224823963|ref|ZP_03697071.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603382|gb|EEG09557.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 313

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 138/297 (46%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSF  AAE++ LS++ +++ ++ LE ++G++L +R  R L+LTE
Sbjct: 1   MDTLTAMRVFQTVTEAGSFAGAAERMDLSRAMVTKYVAALEQQLGVRLLHRSTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+   +  + +  +++         S  P+G LRI  ++  GQ  L   L EF   YP+
Sbjct: 61  VGADYLQRVASILAQVDEAAAVASRQSQTPAGTLRITASVAFGQRRLGTLLTEFHRRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQR-KLVTIHMHAYAAPHYLKNCREP 180
           I + L+L N+ ID+  +  D A+R        +LI R  L  I+    AAP YL+    P
Sbjct: 121 ISVDLMLTNRHIDLVEEGYDLALRTSLHASEENLIARLLLGPIYSTLLAAPSYLEKHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  HN + +   +      F        P+       L  N    ++     G G
Sbjct: 181 QTPADLVHHNCLRYSRPLESNTWSFG---PPQSPVTVRVSGSLSTNDGAVLIDAARAGLG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IAL P  +V ++     LV ++ D   PS  +Y  YP       K++   +F+  + 
Sbjct: 238 IALQPSVLVSEDLASGRLVELLPDWEKPSTALYALYPARRFLPQKVRTLIDFLSEQL 294


>gi|163732006|ref|ZP_02139452.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
 gi|161394304|gb|EDQ18627.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
          Length = 301

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 109/288 (37%), Positives = 175/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+ +  +L+T    +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATAAMTRRLDTASARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q+  LI++KL+ I M  YA P YL +   P +
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKKLMMIRMCLYATPDYLADYAAPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+E+  H LI       +     + +  +   + +   S L VN+Y  ++Q  +   GI 
Sbjct: 180 IEEIKDHRLICQNIDSDQVGAGRSLVQHL---MTQNIRSMLTVNNYYGVLQGVLQNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P+LVR++ D+ +    V+  YPE L+ + ++ AF++F+
Sbjct: 237 VLPDYVTEDFPDLVRVLPDLSSADVPVFLAYPEELRQSQRVSAFKDFV 284


>gi|90411107|ref|ZP_01219120.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
 gi|90327953|gb|EAS44274.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
          Length = 294

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 141/293 (48%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  VA+  SF  AA  L +S+S++S++++ LET +G++L +R  R ++LTE G 
Sbjct: 4   LDAIPYFLAVAKHESFAEAARHLDVSRSAVSKRVNQLETSLGVRLLHRTTRKVSLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    Y+ ++  +         P GKL++   +  G+  +   +  FL  YP ++I
Sbjct: 64  HYLINAQNAYYWIQQAEDAATSRQRSPIGKLKVCVPMSFGRLKIAPLIPGFLKKYPQVEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +++D++  DI     D AIR    +  SSLI RKL+       A+  YL     P +  
Sbjct: 124 DMVMDDRYSDIVDAGFDVAIR-GGELADSSLIARKLMPSRSLICASSAYLDGKTLPTTPI 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +          F +   ++           +VN+  ++++ C+ G G+  L
Sbjct: 183 DLTEHNALIYSYSAQTTEWVFEYQDHIE---TVAVRGNYRVNNSEAVLEGCLQGIGVGRL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PD+I K   DN  L++++ +   P   ++  +PE      K++ F ++++   
Sbjct: 240 PDFIAKPYIDNGELIQLLSEYKMPEKNIWAVFPERTYMPVKVRIFIDYLYEAL 292


>gi|332307314|ref|YP_004435165.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174643|gb|AEE23897.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 288

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 147/293 (50%), Gaps = 11/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA + SFT A++ L +S + +SRQIS LET + +KLFYR  R ++LTE+
Sbjct: 1   MQWEGINEFVYVAETESFTQASKNLAISTAQVSRQISALETRLNVKLFYRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    V   LE  +  +     KP G +R+   +  G+  +   + +F+LLYPD+
Sbjct: 61  GRLFYQHCRSVLDGLEAAERAITNLQSKPQGTIRLTAPVTYGEQQILPLVNDFMLLYPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++   L N+ ID+     D AIRL K +  SS++ +KL T      A+P YL     P S
Sbjct: 121 EVSAYLSNQKIDLVEQGYDLAIRLGK-LSDSSMMAKKLATRTNSVCASPEYLAKYGFPHS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL+KH+ +           D+      ++         L+ NS  S++   + G GI 
Sbjct: 180 LSELNKHSCLL-------GTLDYWHFRDENKERNIRVKGRLRYNSGFSLVDAALKGLGIV 232

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPDY V+++     LV ++++       ++  YP     + K+++  +++  
Sbjct: 233 QLPDYYVQEHIESGALVSLLDNYRESEEGIWAIYPRNRHLSPKIRSLVDYLAE 285


>gi|331016884|gb|EGH96940.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 301

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 140/293 (47%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPVFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDLVLRIG-VLEDSSLIARRIASIDRVYCASPTYLAERGTPQQPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  + +G                 +P+       ++ N+   +    + G GI  L
Sbjct: 183 DLHSHECLPYGHSRHVQWR----FQGTGKPVSLNVSGRIRANNGELLKDAALAGLGITYL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV D     +LVR+++++     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVGDALRAGSLVRVLDELRPEPLTLSAVYPQHRQASRPVQAFIEFLRERL 291


>gi|300697765|ref|YP_003748426.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074489|emb|CBJ54040.1| putative transcription regulator protein, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 314

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 144/293 (49%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T 
Sbjct: 1   MDRLQAMQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   LE T+    +S+    G LRI     +G+ LL   +++F   YPD
Sbjct: 61  DGAAYYERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHNAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+++ + ++ +D+  +  DCA+R+ + +Q S+L+ R++  + M   A+P YL     P 
Sbjct: 121 LQLEVGMSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGQLSMVNCASPDYLARYGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           ++++L  H  I      P+     +W   +D      ++  L  VN   S M   + G G
Sbjct: 180 TLEDLQDH--IAVNYFSPRNGRRMDWDFVIDGQKQIHKVRSLVSVNDAESAMACALHGLG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     ++  ++     LV ++ D I+ S  V   YP     + K++ F +++
Sbjct: 238 LLQTARFLAYEHLMSGQLVEVLPDYISESLPVSVIYPHNRHLSPKVRVFVDWV 290


>gi|324111230|gb|EGC05213.1| LysR substrate binding domain-containing protein [Escherichia
           fergusonii B253]
          Length = 304

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 141/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAAPPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYIARYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +           +A  D  + E + S L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTEPASLNTWP---IACSDGQLHEVQYS-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|115359447|ref|YP_776585.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|170698004|ref|ZP_02889086.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|172064242|ref|YP_001811893.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115284735|gb|ABI90251.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
 gi|170137066|gb|EDT05312.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|171996759|gb|ACB67677.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 334

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 145/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++      + AAP YL+   EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLFECVSVAAPAYLEKYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           +I++L  H  + +     +     +W    D    E +++ +  VN   + +   + G G
Sbjct: 180 TIEDLSDHKAVNY--FSSRTGRTIDWTFLTDGKEVEVKMNAIVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V     +  L  ++  +      +   YP +   + K++ F ++I  
Sbjct: 238 LIQPPLFMVLPHLRDGRLKEVLPGLKPLPMPISVVYPHSRHLSPKVRVFVDWIAE 292


>gi|218547658|ref|YP_002381449.1| DNA-binding transcriptional regulator [Escherichia fergusonii ATCC
           35469]
 gi|218355199|emb|CAQ87806.1| putative DNA-binding transcriptional regulator [Escherichia
           fergusonii ATCC 35469]
          Length = 304

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 136/299 (45%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYIARYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +          W  T            L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTEPASLN----TWPITCSDGQLHEVKYVLSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|163746586|ref|ZP_02153944.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380471|gb|EDQ04882.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 303

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 177/296 (59%), Gaps = 4/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE ++   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRGLEEQLNTNLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   TS +  +L+     +++S  +  G+LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATSAMAKRLDAAAARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEQYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q+  L++++L+T+ M  YA P YL+    P  
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQAD-LVRKRLMTVRMGLYATPEYLEKHGTPKR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++++  H LI       +       L  V   +     S L VN+Y  ++Q  V   G+ 
Sbjct: 180 MEDMADHRLICQNTDSDQVGAG---LQLVKELMMYDLRSLLTVNNYFGVLQGVVHHLGLG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LP+Y+++D P++V++M D+ +    VY  YPE L+ + ++ AF++F+  +   ++
Sbjct: 237 VLPNYLIQDFPHIVQVMPDIESAEVPVYLAYPEELRQSKRVAAFKDFVQEEIITYR 292


>gi|144898709|emb|CAM75573.1| transcriptional regulator, LysR family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 298

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L  F      G FT AA +L  S+S ISRQ++ LE ++G +L  R  R L+ TE
Sbjct: 1   MDQFAALTAFVQTVECGGFTQAARRLGQSKSLISRQVAQLEAQLGARLLQRTTRKLSTTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L     E+ +    P GKLRI+  +  G   L   L  FL   P+
Sbjct: 61  AGQAYYQRAHRILADLAEASAEIGQLQSMPRGKLRISAPMSFGVLHLTPALPRFLESCPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  D A+R+ + +  SSLI R++  I     A+P YL  C  P 
Sbjct: 121 LEMDLALTDRFVDLVEEGFDVAVRIGR-LADSSLIVRRITPIRRVLCASPAYLARCGHPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              +L  H  +   ++            T D  +   R+SC  +  +  ++    + G G
Sbjct: 180 RPADLAHHACLGHLEMGSSEWR----FLTADNGLETVRVSCRFRAGNGEALRTMALAGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              LP + +  +     LV +++  +     +Y  YP     + K++ F +F+
Sbjct: 236 FVYLPSFFIGADLRAGTLVSVLDQYVPQDSALYGAYPHGRHLSAKVRVFLDFL 288


>gi|312959680|ref|ZP_07774197.1| regulatory protein [Pseudomonas fluorescens WH6]
 gi|311286397|gb|EFQ64961.1| regulatory protein [Pseudomonas fluorescens WH6]
          Length = 301

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 138/300 (46%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + V+  V  +GS T AA    +S + +   +  LE  +G+ L  R  R  +LT
Sbjct: 1   MDL-FQAMSVYVKVVETGSMTAAAYACGMSTTMVGNHLRALEQRLGVSLLKRTTRKQSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           E G + ++   EV   +  ++    Q  S  P G LRI      G   L   L EF   Y
Sbjct: 60  EFGGQYYQRCLEVLGLVADSEQLAEQAHSDVPKGTLRITAPPAFGTERLAPALSEFSRRY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I++ ++L N+ +D+     D AIRL + ++ SSLI R +    +   A+P YL     
Sbjct: 120 PQIKLYVVLGNERMDLVDSGFDAAIRLGE-LEPSSLIARPMQDYTITLCASPEYLARHGT 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCV 236
           P + ++L +H+ + F         D + L  +    GE   P    L +NS  ++ Q  V
Sbjct: 179 PQTPEDLQQHDCLAFAYPSTDDWRDADKLWRMTDAAGEVEIPVSGSLTINSSQALRQVAV 238

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI +LPD +V+ +     LV ++     PS  ++  Y +      KL+AF +F+  K
Sbjct: 239 QGMGIVMLPDALVQPDLQSGKLVALLTHYQLPSRPMHLLYGQDRYRLPKLRAFVDFVMEK 298


>gi|24373613|ref|NP_717656.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24347948|gb|AAN55100.1|AE015647_6 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 291

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 146/293 (49%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + +FT AA++L++S + +SRQI  LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAENFTLAAQRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  + +    P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAITDLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEC 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   EP ++ 
Sbjct: 124 NVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGEPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +       + +E         R         L  NS  ++    + G GI  L
Sbjct: 183 ELNQHNCLIGNHNYWRFIEH-------GRERNFKVRGKLICNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PDY ++++     L+  ++        ++  YP+    + K++   +++  K 
Sbjct: 236 PDYYIEEDIHAGRLISFLDTHREAKEGIWALYPQNRHLSAKVRVLVDYLAEKL 288


>gi|226946789|ref|YP_002801862.1| transcription regulator pirR [Azotobacter vinelandii DJ]
 gi|226721716|gb|ACO80887.1| transcription regulator pirR [Azotobacter vinelandii DJ]
          Length = 293

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 137/293 (46%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R+F  V   GSFT AAE L LS+  +SR++ GLE  +G +L  R  R L +T  G+
Sbjct: 4   LEDMRLFVAVVDGGSFTAAAEALGLSKQFVSRRLMGLEARLGARLLNRSTRRLAVTPLGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   +   +  + +    P G LR++  +  G   L   L  FL  YP++ +
Sbjct: 64  LYCERARRILDDVAEAEQAILQQRATPRGTLRLSAPMSFGTLHLGRLLPGFLERYPEVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +D+  +  D A+R+ + +  S+LI R L  + M   A+P YL+    P + +
Sbjct: 124 ELELSDRRVDLLEEGYDMAVRIGE-LADSTLIARALAPLRMVTCASPAYLQRRGAPQTPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H+ + +G         +       RP         +VN+   +    + G G+A L
Sbjct: 183 ALREHDCLLYGHGKLVVWTYWR----DGRPERVEVRGRYRVNNGELVRDAALAGLGLAWL 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV        L+ ++E    P   VY  YP+  + +  ++AF ++++   
Sbjct: 239 PTFIVGPELTAGTLLPVLEAFQGPPAKVYAVYPQHRQTSALIRAFTDYLYEAL 291


>gi|171315750|ref|ZP_02904983.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171099162|gb|EDT43938.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 334

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 145/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++      + AAP YL+   EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLFECVSVAAPAYLEKYGEPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           +I++L  H  + +     +     +W    D    E +++ +  VN   + +   + G G
Sbjct: 180 TIEDLSDHKAVNY--FSSRTGRTIDWTFLTDGKEVEVKMNAIVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V     +  L  ++  +      +   YP +   + K++ F ++I  
Sbjct: 238 LIQPPLFMVLPQLRDGRLKEVLPGLKPLPMPISVVYPHSRHLSPKVRVFVDWIAE 292


>gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072445|gb|ADJ61844.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 337

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 147/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++VF  V  + SFT AA+ L+L +++++  + GLE+ + ++L  R  R ++LT 
Sbjct: 1   MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   L+ T+   +  +  P G+LRI     +G+ +L  NL +F   YPD
Sbjct: 61  DGAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + + ++ +D+  +  DC IR+ + +Q SS++ R++ T      AAP YL+    P 
Sbjct: 121 IELMMGMGDRPVDLVQEAVDCVIRIGE-LQDSSMVARRIGTFQTVTCAAPAYLERHGVPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           +I++L +H  + +     +     +W   V+    E +++  L VN   + ++  + G G
Sbjct: 180 TIEDLQQHKAVHY--FSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P Y+V    D   LV ++         +   Y      + K++AF +++  
Sbjct: 238 MVQAPLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAE 292


>gi|319426217|gb|ADV54291.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 292

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 147/295 (49%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSTLENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELSQHNCLIGNHNYWRFVEN-------GRERNIKVRGNLNCNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           PDY ++++    R+   ++        ++  YP+    + K++   +++  K  +
Sbjct: 236 PDYYIEEDIQAGRLLSFLDSHREAKEGIWALYPQNRHLSAKIRVLVDYLAEKLAE 290


>gi|120598650|ref|YP_963224.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120558743|gb|ABM24670.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
          Length = 292

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 148/295 (50%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSTLENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELNQHNCLIGNHNYWRFVEN-------GRERNIKVRGNLNCNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           PDY ++++    R+   ++        ++  YP+    + K++   +++  K  +
Sbjct: 236 PDYYIEEDIQAGRLLSFLDTHREAKEGIWALYPQNRHLSAKIRVLVDYLAEKLAE 290


>gi|260575248|ref|ZP_05843248.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
 gi|259022508|gb|EEW25804.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
          Length = 297

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 108/296 (36%), Positives = 168/296 (56%), Gaps = 4/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDSLHLSQSAVSRQIRSLEESLSVTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G+LR+ TT   G   L   L      YP +
Sbjct: 61  GELLFEATKAMVKRLDAAAARIRDSEDEVFGELRVTTTTGFGTLWLAPRLTALYKKYPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+ I M  YA+  YL +   P +
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMNIRMRLYASSEYLADHGTPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +  +H LI          +     A V   +     S L VN Y  ++Q  +   GI 
Sbjct: 180 MDDFTQHRLIC---QHAGTAQVAAGAALVQELMSHDIPSTLTVNHYFGVLQAVLNHIGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LPDY+ +D PNLVR++ D  +    V+  YPE L+++ ++ AFR F+  +   ++
Sbjct: 237 VLPDYLAEDFPNLVRVLPDTESGDVPVFLAYPEELRHSKRVAAFREFVTEEIFAYR 292


>gi|283834507|ref|ZP_06354248.1| contact-regulated protein A [Citrobacter youngae ATCC 29220]
 gi|291070057|gb|EFE08166.1| contact-regulated protein A [Citrobacter youngae ATCC 29220]
          Length = 304

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L +H  + F + +         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ETVEQLKQHLCLGFSEPVSLNTWP---IACRDGQLHEVECG-ISSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|167584840|ref|ZP_02377228.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 334

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 147/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQNNNRKPHGKLRIDMPGSIGRLLVIPSLCEFHSRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++      + A+P YL+   EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRIGLFECTSVASPAYLEKYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           SI++L +H  + +     +     +W   +D    E ++ S + VN   + +   + G G
Sbjct: 180 SIEDLSQHKAVNY--FSSRTGRVIDWTFLIDGKEVEIKMDSVVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V  +     L  ++  +      +   YP +   + K++ F ++I  
Sbjct: 238 LVQPPLFMVLPHLREGRLKEVLPGIKPLPMPISVVYPHSRHLSPKVRVFVDWIAE 292


>gi|84500460|ref|ZP_00998709.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84391413|gb|EAQ03745.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 301

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 138/293 (47%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L EFL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGEFLAEFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D AIR+ + ++ S+L  RKL        AAP Y +    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETSKRMIAAPTYFEKYGRPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ +       +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNEHKLLHYSSQASGNVWKLTAPSGEKRQVRT--AGWLSVNDGQSLLNAAIAGLGI 237

Query: 242 ALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A LP ++  +     ++   M ++ T +  +Y  YP       K++AF +F+ 
Sbjct: 238 AYLPSFLYAEALETGQVMDAMPELPTETQGIYAVYPPGRFTQPKVRAFIDFLV 290


>gi|146279021|ref|YP_001169180.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557262|gb|ABP71875.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 301

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +    + PSG LRI+   D G +LL   L EFL  YP 
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQIAPSGLLRISVATDFGVSLLSPILGEFLQEYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D AIR+ + ++ SSL  RKL        AAP Y +    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAIRVGE-LEDSSLRARKLTETTRRMIAAPRYFERHGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ + +     +          R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNEHKLLHYSNQANGNVWKITSPTGEKRQVRT--AGWLTVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP ++  D   +  +   +  +   +  +Y  YP       K++AF +F+  +
Sbjct: 238 AYLPSFLFADAMRDGLVEEAIPGLPVETLGIYAVYPPGRFTQPKVRAFIDFLAKR 292


>gi|89073762|ref|ZP_01160276.1| hypothetical LysR, Transcriptional regulator [Photobacterium sp.
           SKA34]
 gi|89050537|gb|EAR56029.1| hypothetical LysR, Transcriptional regulator [Photobacterium sp.
           SKA34]
          Length = 316

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +   +    +FT AAE+L +S+S +S+QI  LE  +G +L  R  R + LT
Sbjct: 1   MLDNLQQMVILAAIGHEQNFTKAAERLGISKSQVSKQIKCLEERLGCQLVQRSTRTVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   +   +  +     + +G LRI      G   +   L EF    P
Sbjct: 61  EIGVQYADYGQQLIDTVSEAEAMVAGYRNEITGVLRIGIAQSFGNIHITSALAEFQKKNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++++ L +   ++  +  DC I + +      ++ RKL        A+P Y+    EP
Sbjct: 121 ELELEISLFDHRPNLLEEGFDCWIAIHEH-PPEGMVARKLAKCEFVVVASPDYIAQHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           +   +L +HN IT+     K +   NW    D      R++   ++++  +++   + G 
Sbjct: 180 IVPGDLRQHNCITYQSRERKYV---NWEFGRDGLKQSIRVNGNYRIDNAPAVLDAALSGL 236

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIA L  Y++ D      L+ ++ D  T     +Y  YP       K++ F +F+  +
Sbjct: 237 GIAYLSTYLLTDEIKTNKLITLLNDWKTTVELPIYAVYPRRKYLAPKVRCFIDFMAER 294


>gi|241203242|ref|YP_002974338.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857132|gb|ACS54799.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 298

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 130/293 (44%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  V  +GS + A   L  S + +S++I  LE  +G +L  R  R ++LTE G
Sbjct: 3   NLGDLEIFAKVVSTGSMSLAGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   LE  +  +   S +  G L+I+     G+  +  +LK+F+  +P++ 
Sbjct: 63  QGFYDRVLGILAGLEEAEFYISGRSAQMHGTLKISAPTSFGRMHIAPHLKDFMEAHPELA 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L ++  DI     D AIR+ + +  SSL+ R+L  +     A+P YL +  EP  I
Sbjct: 123 INLVLTDEFSDIVGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLASHGEPKHI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H  +      P    D   L   D  +       L  NS   I +  + G GIAL
Sbjct: 182 DELKRHRCL------PAHNNDTWRLNGPDGALSLRPEGLLVTNSSEVIREAVIAGLGIAL 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
              + + +      LV+++    +     +   YP       K++ F +++  
Sbjct: 236 RSTWDIGEELKAGRLVQVLPAYESSHNVALSAVYPSRQFLPAKVRLFIDYLAE 288


>gi|146293271|ref|YP_001183695.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145564961|gb|ABP75896.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 292

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 147/295 (49%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + SFT AA++L++S + +SRQ+S LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAESFTLAAQRLNISTAHVSRQVSTLENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  +      P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAISNLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L     +  A+P Y++   +P ++ 
Sbjct: 124 SVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSNRTHYVAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELNQHNCLIGNHNYWRFVEN-------GRERNIKVRGNLNCNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           PDY ++++    R+   ++        ++  YP+    + K++   +++  K  +
Sbjct: 236 PDYYIEEDIQAGRLLSFLDTHREAKEGIWALYPQNRHLSAKIRVLVDYLAEKLAE 290


>gi|254466139|ref|ZP_05079550.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206687047|gb|EDZ47529.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 301

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/288 (36%), Positives = 169/288 (58%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LE     +++S  +  G+LR+ TT+  G   L   L +    YP++
Sbjct: 61  GELLFDATQSMSARLEAASARIRDSEEEVFGELRVTTTVGFGTLWLAPRLTKLYEQYPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  L++++L+T+ M  YA P YL+      +
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LVRKRLMTVRMGLYATPAYLEKHGNLET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             ++ +H LI       +  +  +      + + E   S L VN+Y  ++Q  +   GI 
Sbjct: 180 SADISQHRLICQNQ---RSAQVGSAAVLGKKLMAEDPASLLTVNNYFGVLQGVLHNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ ++ P LV ++ D       VY  YPE L+++ ++ AFR+F+
Sbjct: 237 ILPDYVTEEFPQLVEVLPDEDQNEVPVYLAYPEELRHSQRVGAFRDFV 284


>gi|120555165|ref|YP_959516.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8]
 gi|120325014|gb|ABM19329.1| transcriptional regulator, LysR family [Marinobacter aquaeolei VT8]
          Length = 302

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 146/294 (49%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA + SFT AA++L +S + +SRQ+S LE  +  +LFYR  R +++TE G 
Sbjct: 4   WEGINEFVAVAETESFTRAAKRLDVSTAQVSRQVSALEARLSTRLFYRTTRRVSVTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   +V   LE  +  +    + P G+LR+   +  G+  +   + +F+L YP++ +
Sbjct: 64  IFYQHCRQVLDALEQAERSITNMQLVPRGRLRLTAPVTYGEKSIAPLVNDFVLRYPELDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D A+R+ K ++ S+L+ R+L +  ++  A+P YL     P S+ 
Sbjct: 124 DMKLTNQTLDLVAEGYDLAVRMGK-LEDSTLMARRLASRTLYVCASPDYLATHGTPHSLT 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  HN +           D+       +P        ++ +S  +++   + G GI  L
Sbjct: 183 ELANHNCLL-------GNLDYWRFQEAGQPRNVRVTGNIRCDSGRALLDAALKGIGIVQL 235

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           PDY V+   D+  L+ ++         ++  YP     + K++   +F+    +
Sbjct: 236 PDYYVQSALDSRLLIPVLTRYQEDDDGIWAVYPHNRHLSPKIRLLLDFLSESLK 289


>gi|149907718|ref|ZP_01896465.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149809388|gb|EDM69317.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 306

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/295 (28%), Positives = 140/295 (47%), Gaps = 6/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  +GSFT AA++L + ++++SR++S LE ++ I L  R  R   LT
Sbjct: 6   MEHDLNDMMVFLAVVETGSFTLAADRLGIPKANVSRKVSRLEQQLNITLLERSTRSQHLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       V+ +L+     + E      G+L+I  +I  GQ +L+  L  F+  YP
Sbjct: 66  EAGKRYLIHCKRVHEELDLATASVSELLHSYKGELKIGASISTGQQILRPALATFMHQYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I +QL L N+ +D   +  D  IR+ + +  S LI +KL T     +++P YL     P
Sbjct: 126 EINVQLNLVNRRVDFIEEGFDVVIRIGQ-LADSMLIAKKLGTATRTLFSSPAYLAKHGTP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L  H L+             N ++T            L V+ +  + Q  + G G
Sbjct: 185 HVVSDLFTHQLLVMNPTNNDPT--LNLVSTAGEAFSVNCKPRLLVDDFAILKQSLIDGLG 242

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA+LPDY+ +++     LV I+ +       VY  YP       K+K F  F+  
Sbjct: 243 IAVLPDYMSREDVAAGRLVNILPNWGMEPVDVYALYPRHRAKIPKVKVFLEFVVE 297


>gi|204926793|ref|ZP_03217995.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323458|gb|EDZ08653.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 304

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 141/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+++L  H  + F + +         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ESVEQLKLHLCLGFSEPVSLNTWP---IACSDGQLHEVECG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|206564394|ref|YP_002235157.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|17998654|gb|AAG21824.1| putative transcriptional regulator CeoR [Burkholderia cepacia]
 gi|198040434|emb|CAR56419.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 334

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 145/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTSSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLFECVTVASPDYLERHGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +I +L++H  + +     +     +W   +D    E ++   + VN   + +   + G G
Sbjct: 180 TIDDLNQHKAVNY--FSSRTGRTIDWTFLIDGKEVEMKMEGIVSVNDADAYVTCGIEGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V  +     L  ++  V      +   YP +   + K++ F +++  
Sbjct: 238 LIQPPLFMVLPHLREGRLKEVLPGVKPLPMPISVVYPHSRHLSPKVRVFVDWVAE 292


>gi|87122530|ref|ZP_01078409.1| Putative transcriptional regulator, LysR family protein
           [Marinomonas sp. MED121]
 gi|86162172|gb|EAQ63458.1| Putative transcriptional regulator, LysR family protein
           [Marinomonas sp. MED121]
          Length = 298

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/295 (30%), Positives = 148/295 (50%), Gaps = 13/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  V R GSF+ AAE+LH+S S ISR +S LE  +   L +R  R + L+E GS
Sbjct: 4   WDGIEAFVEVVRQGSFSAAAEKLHVSASHISRLVSQLEKRLDATLLFRTTRSIRLSEAGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++  S++   +++ +  +   +  P G LRI+     G+  +   + +FL+ +P IQ+
Sbjct: 64  LYYQQCSQLLDSIDSAEEMVTSLNQSPVGHLRISCATTFGERFIAPRVNDFLINHPKIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L N+++D+  +  D AIRL   ++SSSL+ R+L     +  A+ HY+     P ++ 
Sbjct: 124 DLHLTNREVDLIDEGYDLAIRLG-TLKSSSLLARRLCDRVEYVCASAHYIARFGMPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL KH  +     +        W    D+   E +I    + NS  +++   + G GIA 
Sbjct: 183 ELSKHKCLQGSKDV--------WTFMQDKQKREVKIHGNWRSNSGPALLDATLKGLGIAQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LPDY V     +  L+ I+     P   V+  YP+A + + KLK   + +    R
Sbjct: 235 LPDYYVAPYIASGELIPILSQYQYPYTGVWLVYPKARQQSPKLKLLCDHLIGSFR 289


>gi|254489769|ref|ZP_05102964.1| LysR substrate binding domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224464854|gb|EEF81108.1| LysR substrate binding domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 301

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 11/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D L++F  +A + + + A  ++ LS +  S  I+ LE  +G++L +R  R ++LTE+
Sbjct: 1   MNVDHLKLFTRIAVTENISAAGNEIGLSPAVASSYINKLEKSLGVRLVHRTTRQVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        EV   +E  +  +      PSG LRIA         L   LK+F   YP++
Sbjct: 61  GKAFLPHAREVLESVEAARSSVGAGESIPSGTLRIAAPASFAHMHLIPVLKDFTERYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L +  +D+     D AIR  + ++ S+LI RKL        A+P YL    EP++
Sbjct: 121 KLDLRLSDTIVDMVEGGFDVAIRNAE-LKDSNLIARKLAPDSRVLCASPEYLAKYGEPVT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H+ IT   L      D     T    +     S ++V++  ++   C  G G+ 
Sbjct: 180 PDDLKDHHCITLTGL------DTWHFHTPTGQVSVKPDSQIRVDNGEAVRDACAHGLGLT 233

Query: 243 LLPDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +   +   +      LV+++ED     +  ++  YP +     K+  F  ++  +
Sbjct: 234 INSTWSAYELLSQGELVKVLEDFPLVCNTAIWAVYPSSRLLAPKVSVFIEYLIQQ 288


>gi|74310823|ref|YP_309242.1| putative LysR type transcriptional regulator [Shigella sonnei
           Ss046]
 gi|170021444|ref|YP_001726398.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739]
 gi|194438207|ref|ZP_03070299.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|253774770|ref|YP_003037601.1| LysR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160322|ref|YP_003043430.1| putative DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|297516533|ref|ZP_06934919.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           OP50]
 gi|300919152|ref|ZP_07135685.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300927900|ref|ZP_07143460.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|312970306|ref|ZP_07784487.1| uncharacterized HTH-type transcriptional regulator yafC
           [Escherichia coli 1827-70]
 gi|73854300|gb|AAZ87007.1| putative transcriptional regulator LYSR-type [Shigella sonnei
           Ss046]
 gi|169756372|gb|ACA79071.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|194422871|gb|EDX38866.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|242376038|emb|CAQ30723.1| predicted DNA-binding transcriptional regulator LYSR-type
           [Escherichia coli BL21(DE3)]
 gi|253325814|gb|ACT30416.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972223|gb|ACT37894.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253976432|gb|ACT42102.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|300413750|gb|EFJ97060.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300464055|gb|EFK27548.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|310336955|gb|EFQ02093.1| uncharacterized HTH-type transcriptional regulator yafC
           [Escherichia coli 1827-70]
 gi|323165907|gb|EFZ51689.1| hypothetical protein SS53G_3829 [Shigella sonnei 53G]
 gi|323963571|gb|EGB59128.1| LysR substrate binding domain-containing protein [Escherichia coli
           H489]
 gi|323972500|gb|EGB67706.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
          Length = 304

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|160900571|ref|YP_001566153.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366155|gb|ABX37768.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 304

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 10/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +G+FT AA+ L L + ++++QI  LE  V +KL  R  R +T+T 
Sbjct: 1   MDQIQAMRVFVRVVEAGNFTRAADSLDLPKGTVTKQIQALEARVRVKLLNRTTRRVTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   + + +  +  +  +  +   PSG+LR+     + + ++   L EF   YPD
Sbjct: 61  DGAAYYERAARLLNDFDDLEASMVNTQTAPSGRLRLDVGSSMARLIIIPALTEFCERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ +D+  D  DC IR    +   SL+ R++ +++    A+P YL     P 
Sbjct: 121 IQIDLGVGDRLVDLISDNVDCVIR-GGELSDQSLVARRIGSMNWVTVASPAYLARHGVPQ 179

Query: 182 SIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ELD KH ++ F     + M         D  I       +  N   +     + G G
Sbjct: 180 HPSELDTKHQIVAFFSGHTRRMYPLE-FQRGDESIEVAGNYRIAANDSNAYTAAVLAGFG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLK 293
           IA L     +   D+  LV ++ +   P   ++  YP     + K++AF ++   +F +
Sbjct: 239 IAQLVTAFAQPLIDSGELVEVLPEWTQPPLPIHVVYPPNRHLSAKVRAFVDWAADLFAR 297


>gi|78061145|ref|YP_371053.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969030|gb|ABB10409.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 334

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 144/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTSSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQANNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLFECVTVASPDYLERHGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +I +L++H  + +     +     +W    D    E ++   + VN   + +   + G G
Sbjct: 180 TIDDLNQHKAVNY--FSSRTGRTIDWTFLTDGKEVEMKMEGIVSVNDADAYVTCGIEGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V  +     L  ++  V      +   YP +   + K++ F +++  
Sbjct: 238 LIQPPLFMVLPHLREGRLKEVLPGVKPLPMPISVVYPHSRHLSPKVRVFVDWVAE 292


>gi|260853413|ref|YP_003227304.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|260866351|ref|YP_003232753.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
 gi|257752062|dbj|BAI23564.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|257762707|dbj|BAI34202.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
 gi|323157957|gb|EFZ44059.1| hypothetical protein ECEPECA14_0166 [Escherichia coli EPECa14]
 gi|323176520|gb|EFZ62112.1| hypothetical protein ECOK1180_5221 [Escherichia coli 1180]
          Length = 304

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGQRYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIVRGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|209694335|ref|YP_002262263.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
 gi|208008286|emb|CAQ78432.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
          Length = 290

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 149/298 (50%), Gaps = 13/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+ +  F  VA + SFT AA+ L  S + ISR+++ LE  + IKL  R  R +++TE 
Sbjct: 2   INWEGVTEFVAVAEAQSFTGAAKALDTSVAQISRKVAALEERLSIKLLIRTTRKVSVTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +   L+     + E +  P G+L+I +++  G+ L+   L +F+L+YP +
Sbjct: 62  GQTYYQHCRHLVEGLKQADRAITELNATPQGRLKITSSVTYGEQLIAPLLSDFMLMYPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+L N+  D+     D AIRL + +  S+++ ++L +  +   A+P Y++   EP +
Sbjct: 122 ELELVLSNQTFDLVEQDFDLAIRLGR-LSDSTMMAKRLSSRQVRVCASPAYIEKYGEPHT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + EL +HN +     I        W    ++     R+   +  NS  ++    + G GI
Sbjct: 181 LSELSQHNCLVGSLPI--------WRFIENKKEKSVRVKGSVHCNSGAALTNAALKGLGI 232

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LPD+ V+++     LV I+     P   ++  YP     + K++    F+  +  +
Sbjct: 233 VQLPDFYVQESMDKGELVEILVPYREPKEGIWAVYPNNRHLSTKVRLLVEFLAKELAE 290


>gi|187920095|ref|YP_001889126.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718533|gb|ACD19756.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 295

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 8/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D +R+F     + +FT AA +L LS+  +SR++  LE  +G++L  R+ R L +T+ 
Sbjct: 1   MQLDDMRIFVATVDAHNFTAAANRLSLSKQFVSRRVMALEETLGVQLLIRNTRKLAVTDL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++E  +  +      P G LR++  +  G   L   +  FL  + D+
Sbjct: 61  GQEFYERAKRILGEVEDAEQAMSLRRAGPRGLLRVSAPMSFGMAHLSPLVAMFLREHGDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++ L ++ +D+  +  D AIR+   +  S+LI +KLV I M A  +P Y++    P  
Sbjct: 121 RFEMELSDRTVDVVGEGFDMAIRIGS-LPDSTLIGQKLVDIRMVACCSPGYVRRRGAPKV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L++H+ + +G       E            G      L+ N+   +    V G GI 
Sbjct: 180 PGDLERHSCLLYGHGGAVSWE----FVVDGVTKGVEVHGPLRANNGELVRDAAVAGLGIV 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD+IV D   +  LV ++E  +  + +VY  YP+  +++  ++AF  F+  
Sbjct: 236 RLPDFIVADALKSGQLVPVLEAFLPSATSVYAVYPQHRQSSLTIRAFVEFLRE 288


>gi|188496226|ref|ZP_03003496.1| transcriptional regulator, LysR family [Escherichia coli 53638]
 gi|188491425|gb|EDU66528.1| transcriptional regulator, LysR family [Escherichia coli 53638]
          Length = 304

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 144/299 (48%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTE--PASLNTWP-IARSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++     +  LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIAHGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|254426809|ref|ZP_05040516.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
 gi|196192978|gb|EDX87937.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
          Length = 290

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 136/292 (46%), Gaps = 13/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD++  F  V R GSF  AA  L +S S +SR ++ LET++G +L YR  R LTLT+ G+
Sbjct: 4   WDRIEAFVEVVRLGSFARAARDLGVSSSHVSRLVARLETQLGTQLLYRTTRRLTLTDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++   +     + +   +P+G LR+      G+  +   + +FL  +P + +
Sbjct: 64  VYFDHCCQLFDGFQEALNAISDFQQQPTGVLRLTCATTFGERFIAPLVNDFLACHPQLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL   N+ +DI  +  D AIR    +  SSLI R+L     +   +P Y +    P ++ 
Sbjct: 124 QLDFTNRRVDIVDEGFDVAIRTGA-LPDSSLIARRLCPRREYVVGSPAYFERHARPHTLG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL  HN +              W   VD      ++    + NS ++++     G G+  
Sbjct: 183 ELGGHNCL--------QGSSEQWAFDVDGQHRHSKVQGNWKGNSGVALLDAARKGIGLVQ 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPDY V D+    +LV +++        V+  YP     + K++ F +F+  
Sbjct: 235 LPDYYVADDLARGDLVSVLDQYACTHTAVWVVYPRHRHLSPKVRQFVDFLVE 286


>gi|161615584|ref|YP_001589549.1| hypothetical protein SPAB_03359 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|200389332|ref|ZP_03215943.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|161364948|gb|ABX68716.1| hypothetical protein SPAB_03359 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|199601777|gb|EDZ00323.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 304

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL +H  + F + I         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ESVEELKRHLCLGFSEPISLNTWP---IACSDGQLHEIECG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|320186404|gb|EFW61136.1| Transcriptional regulator LysR family, yafC [Shigella flexneri CDC
           796-83]
          Length = 304

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +           +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTEPTSLNTWP---IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|323528034|ref|YP_004230186.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385036|gb|ADX57126.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 296

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 145/292 (49%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D +R+F     + +FT AA++L LS+  +SR++  LE  +G+ L  R+ R L +T+ 
Sbjct: 1   MQLDDMRIFVATVDAHNFTAAAKRLALSKQFVSRRVMALEEALGVPLLVRNTRKLAVTDL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++E  +  +      P G L+++  +  G   L   + +FL  + D+
Sbjct: 61  GQEFYERAKRILGEVEDAEQAMSLRRAGPRGLLKVSAPMSFGMLHLSPLVADFLREHRDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +  + L ++ +D+  +  D A+R+   +  S+LI +KLV +++ A  +P YL+    P +
Sbjct: 121 RFDMELSDRTVDVVGEGFDMAVRIG-VLPDSTLIAQKLVDVNLVACCSPAYLRRRGRPAA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGI 241
             +L +H+ + +G           W   VD  +        L+ N+   I    V G GI
Sbjct: 180 PADLARHSCLLYGH-----GGVVTWEFAVDGAVKSFEVHGPLRANNGDLIRDAAVAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPD+IV D   +  LV ++++ +     VY  YP+  +++  ++AF +F+
Sbjct: 235 VRLPDFIVADALRSGRLVTVLDEFLASPTGVYAVYPQHRQSSLTIRAFVDFL 286


>gi|260427825|ref|ZP_05781804.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260422317|gb|EEX15568.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 305

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 107/288 (37%), Positives = 174/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 5   MDWDKLRIFHAVADAGSLTHAGDALHLSQSAVSRQIRSLEESLNTTLFHRHARGLILTEQ 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+ +  +++     +++S  +  G+L++ TT   G   L   L +    +PD+
Sbjct: 65  GELLFDATAAMVKRIDAATARIRDSEEEVFGELKVTTTHGFGVLWLAPRLTKLYEKFPDL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L++I M  YA+P YL     P +
Sbjct: 125 KIDLMLEERVLDLPMREADIAIRMKEPSQAD-LIRKRLMSIRMRMYASPDYLAEHGTPGA 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++EL+ H LI      P   +       V   +     + L VN+Y  ++Q  V   GI 
Sbjct: 184 LEELENHRLIC---QNPASAQVAAGKLLVQELLTYGPQTALTVNNYFGVLQAVVANLGIG 240

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDYI++D P+++R++ +V +    V+  YPE L+++ ++ AFR+F+
Sbjct: 241 VLPDYIIEDFPSVIRVLPEVESNEVPVFLAYPEELRHSKRVAAFRDFV 288


>gi|127513206|ref|YP_001094403.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126638501|gb|ABO24144.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 304

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 136/294 (46%), Gaps = 9/294 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D  D ++ F  V + GSFT AA++L LS   +S+ +S LE  + ++L  R  R + +
Sbjct: 1   MALDRIDTMKAFTAVVQEGSFTKAADRLGLSSQLVSKYVSQLEEHLKVRLLNRTTRRVNV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G        +V   +E     L   S   SG L+++  +  G + L   L +F   +
Sbjct: 61  TEAGRAYFERCQQVLIDIEEMDNALTNLSETASGLLKVSAPMSFGIHHLPSALVQFQQQH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+++ + L +K +D+  D  D A+R+ + + SSSLI +KL  I +   A+P YL    E
Sbjct: 121 PDVRLDITLTDKKVDLLEDGVDVALRIGQ-LTSSSLIAKKLTPIKLVVCASPEYLAERGE 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L  HN + F          F         +  P  S L  N+   +++  + G 
Sbjct: 180 PKTPADLIHHNYLHFS--YSDLGAAFGRFGEHFSALKIP--SDLACNNGDMLVEAAIAGR 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI + P ++V     +  L  I+ D     F +Y  Y        K++ F + +
Sbjct: 236 GIVVQPTFLVSKALRSGKLKAILTDYTPEPFGLYAVYVHRKFLASKVRCFVDAL 289


>gi|90577773|ref|ZP_01233584.1| hypothetical LysR, Transcriptional regulator [Vibrio angustum S14]
 gi|90440859|gb|EAS66039.1| hypothetical LysR, Transcriptional regulator [Vibrio angustum S14]
          Length = 311

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +   +    +FT AA++L +S+S +S+QI  LE  +G +L  R  R + LT
Sbjct: 1   MLDNLQQMVILAAIGHEQNFTKAADRLGISKSQVSKQIKCLEERLGCQLVQRSTRTVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   +   +  +     + +G LRI      G   +   L EF    P
Sbjct: 61  EIGVQYADYGQQLIDTVNEAEAMVAGYRNEITGVLRIGIAQSFGNIHITSALAEFQKQNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++++ L +   ++  +  DC I + +      ++ RKL        A+P Y+    EP
Sbjct: 121 ELELEISLFDHRPNLLEEGFDCWIAIHEH-PPEGMVARKLAKCEFVVVASPDYIAQHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           +   +L +HN IT+     K +   NW    D      R++   ++++  +++   + G 
Sbjct: 180 IVPGDLRQHNCITYQSRERKYV---NWEFGRDGLKQSIRVNGNYRIDNAPAVLDAALSGL 236

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIA L  Y++ D      L+ ++ D  T     +Y  YP       K++ F +F+  +
Sbjct: 237 GIAYLSTYLLTDEIKTNKLITLLNDWKTTVELPIYAVYPRRKYLAPKVRCFIDFMAER 294


>gi|296105251|ref|YP_003615397.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059710|gb|ADF64448.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 299

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +++F  VA   SF+ AAE L L + S+SRQI  LE  +G +L +R  R ++LT+
Sbjct: 1   MDKINAMQLFVRVAELESFSRAAETLTLPRGSVSRQIQALENRLGTQLLHRTTRRVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+      Q      SG+LR+   + + +NL+   L  FL  YP 
Sbjct: 61  DGMVYYERAKDLLANLDELDGMFQHDPSSISGRLRVDMPVGVARNLVIPKLPAFLQQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+   ++ S LI R L  + +   A+P YL     P 
Sbjct: 121 IELELSSSDRLVDVIREGFDCVVRVG-TLKDSGLIARPLGKLTVINCASPDYLTRFGYPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H +I +  ++    + F                 L VNS  +    C+ G GI
Sbjct: 180 TLDDLASHAVIHYAAMLGTRPQGFE-FYNGSTTQWVKTGGVLTVNSTETYHAACIAGLGI 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P   V+D+     L+ ++         V   YP     + ++  F  ++  
Sbjct: 239 IQVPRVGVRDSLRTKKLIEVLPQYRAEPMPVSLIYPHRRNLSRRVHLFMEWLTE 292


>gi|146276944|ref|YP_001167103.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555185|gb|ABP69798.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 297

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 108/296 (36%), Positives = 171/296 (57%), Gaps = 4/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLNVTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   TS++  +LE     +++S  +  G+LR+ TT   G   L   L      YP +
Sbjct: 61  GELLFDATSQMVKRLEAAAARIRDSEDEVFGELRVTTTTGFGTLWLAPRLVGLYRKYPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L++I M  YA+P Y+     P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMSIRMRLYASPDYVAEHGMPEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++   H LI     +P   +     A V   +     S L VN+Y  ++Q  +   G+ 
Sbjct: 180 MEDFSHHRLIC---QLPGAPQVAAGAALVQEILTNDIPSTLTVNNYFGVLQAVLNNLGVG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           ++PDY+    P LVR+M +V +    V+  YPE L+++ ++ AFR F+  +   ++
Sbjct: 237 VMPDYLAVAFPQLVRVMPEVESNDVPVFLAYPEELRHSKRVAAFREFVMEEISLYR 292


>gi|254487575|ref|ZP_05100780.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214044444|gb|EEB85082.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 301

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 137/298 (45%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L  FL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPALSGFLEEFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPGYFEKYGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L+ H L+ + +     M      +   R +       L VN   S++   V G GI
Sbjct: 180 KIDDLNDHKLLHYSNQSSGNMWKLTSPSGEKRQVRT--AGWLSVNDGQSLLNAAVSGLGI 237

Query: 242 ALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP ++  D     LV   + D+   +  +Y  YP       K++AF +F+     D
Sbjct: 238 AYLPSFLYADAMEKGLVEDAIPDLPLETQGIYAVYPPGRFTQPKVRAFIDFLVHAFAD 295


>gi|331651113|ref|ZP_08352138.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
 gi|331050854|gb|EGI22906.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
          Length = 304

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-VACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|294142101|ref|YP_003558079.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328570|dbj|BAJ03301.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 289

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 145/296 (48%), Gaps = 11/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT AA++L +S + +SRQ+S LET +  KLF+R  R +++TE 
Sbjct: 2   FNWEGISEFVAVAETESFTQAAKRLGISTAQVSRQVSALETRLATKLFHRTTRKVSVTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +   +V   LE  +  +      P G+L+I   +  G+  L   + +F+  YP++
Sbjct: 62  GQVYFQHCRQVLDGLEEAERAITNLQSTPRGRLKITAPVTYGERTLAPLINDFITKYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL L N  +D+  +  D AIRL + ++ S+++ ++L     +  AAP YL     P S
Sbjct: 122 EVQLNLTNLRVDLIDEGYDLAIRLGQ-LEDSTMMAKRLGKRTHYVCAAPSYLSTYGIPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL++HN +           D+       + +       L  NS  +++   V   GI 
Sbjct: 181 LSELEQHNCLL-------GTLDYWRFQDKGKAVNIRVRGNLNCNSGRALVDAAVKAIGIT 233

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LPDY V    ++  LV I+E        ++  YP+    + K++     +  + +
Sbjct: 234 HLPDYYVLPYLESGELVSILEQHRPFDDGIWAVYPQNRHLSPKVRILIEHLTEQLK 289


>gi|187926406|ref|YP_001892751.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241665893|ref|YP_002984252.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728160|gb|ACD29324.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240867920|gb|ACS65580.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 314

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 147/292 (50%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T 
Sbjct: 1   MDRLQAMQVFTRVVEASSFTKAADSLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   LE T+    +SS    G LRI     +G+ LL   +++F   YPD
Sbjct: 61  DGAAYYERCVRLLGDLEETEAAFSQSSSGARGTLRIDVPASIGKRLLVPRIRDFHEAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+++ + ++ +D+  +  DCA+R    +Q SSL+ R++  + M   A+P YL  C  P 
Sbjct: 121 LQLEIGMSDRTVDLVQEGVDCAVR-GGELQDSSLVARRIGQLSMVNCASPEYLARCGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++++L  H  + +         D++++    + I + R S + VN   S +   + G G+
Sbjct: 180 TLEDLQDHTAVNYFSARNGRRMDWDFVIDGQKQIHKVR-SMVSVNDAESAVACGLHGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                ++V ++     LV ++ D I+ +  V   YP     + K++ F +++
Sbjct: 239 LQTSRFLVYEHLMSGALVEVLPDHISEAVPVSVVYPHNRHLSPKVRVFVDWV 290


>gi|215485364|ref|YP_002327795.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312964730|ref|ZP_07778981.1| uncharacterized HTH-type transcriptional regulator yafC
           [Escherichia coli 2362-75]
 gi|215263436|emb|CAS07756.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312290751|gb|EFR18629.1| uncharacterized HTH-type transcriptional regulator yafC
           [Escherichia coli 2362-75]
          Length = 304

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|320323309|gb|EFW79397.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327506|gb|EFW83518.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 302

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 141/293 (48%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEIEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRIG-VLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G                 +P+       ++ N+   +    V G GI  L
Sbjct: 183 DLHAHDCLPYGHSRQAQWR----FQVQGKPLILNISGRMRANNGELLRDTAVAGLGITYL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV     + +LVR+++D+     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFLRERL 291


>gi|254475739|ref|ZP_05089125.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214029982|gb|EEB70817.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 301

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L +FL  YP+
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ SSL  RKL        A+P YL+    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMALRIGE-LEDSSLRARKLTETTKRMIASPAYLEKFGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L+ H L+ + +     M      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNTHKLLHYSNQSSGSMWKITAPSGEKRQVRT--SGWLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP Y+  D     LV  +M  +   +  +Y  YP       K++AF +F+     +
Sbjct: 238 AYLPSYLYSDAMAEGLVEDVMPSLPRETQGIYAVYPPGRFTQPKVRAFIDFLAEAFAE 295


>gi|315616894|gb|EFU97511.1| uncharacterized HTH-type transcriptional regulator yafC
           [Escherichia coli 3431]
          Length = 304

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTE--PASLNTWP-IARSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|190572610|ref|YP_001970455.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190010532|emb|CAQ44141.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 293

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + +RVF  V     F+ AA+ L +S + ++RQ++ LE  +  +L +R  R ++ T  G
Sbjct: 3   TLEAMRVFVAVVERNGFSAAAQALDMSTAGVTRQVAALEKRLSTRLLHRTTRRVSPTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +     +  + +  +  +   +++PSG LRI   +  G   L   L  +   +P ++
Sbjct: 63  AAYYAQCVRLLAEFDALEASIGAQALEPSGTLRINAPVSWGIARLGPLLASYRQRFPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+  +  D AIR+ +     +LI R+L    +   AAP YL     P + 
Sbjct: 123 LDLALSDRLVDMVEEGYDVAIRITRE-PGPTLIARRLGESRVSLCAAPAYLAAHGTPQTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL  H  +++             L      +     S L  N+   + +  + G G+ L
Sbjct: 182 QELQAHACLSYSYWAAGDHWP---LQGPGGEVKVAVSSLLHANNGDVLREAAIAGMGVIL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            PD++++D   +  LVR++ +       ++  Y        K+++F + +  
Sbjct: 239 QPDFLLEDALADGRLVRVLPEWEAAPIGIFAVYTSRSHLAPKVRSFIDHLVE 290


>gi|296155935|ref|ZP_06838774.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893441|gb|EFG73220.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 296

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 141/296 (47%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D +R+F     + +FT AA +L LS+  +SR++  LE  +G++L  R+ R L +T+ 
Sbjct: 1   MQLDDMRIFVATVDAHNFTAAANRLSLSKQFVSRRVMALEETLGVQLLIRNTRKLAVTDL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++E  +  +        G LR++  +  G   L   +  FL  + D+
Sbjct: 61  GQEFYERAKRILGEVEDAEQAMSLRRAGLRGLLRVSAPMSFGMAHLSPLVAMFLREHGDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++ L ++ +D+  +  D AIR+   +  S+LI +KLV I + A  +P Y++    P  
Sbjct: 121 RFEMDLSDRTVDVVGEGFDMAIRIGA-LPDSTLIAQKLVDIRVVACCSPGYVRRRGTPAV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L++H+ + +G       E            G      L+ N+   +    + G GI 
Sbjct: 180 PADLERHSCLLYGHGGAVSWE----FVVDGVTKGVEVHGPLRANNGELVRDAAIAGLGIV 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LPD+IV D   +  LV ++ED +  +  VY  YP+  +++  ++A   F+    R
Sbjct: 236 RLPDFIVADALRSGQLVPVLEDFLPTATGVYAVYPQHRQSSLTIRALVEFLREHLR 291


>gi|161519920|ref|YP_001583347.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353903|ref|YP_001949530.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221200900|ref|ZP_03573941.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
 gi|221207095|ref|ZP_03580106.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221210235|ref|ZP_03583215.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
 gi|160343970|gb|ABX17055.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337925|dbj|BAG46994.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221169191|gb|EEE01658.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
 gi|221173169|gb|EEE05605.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221179472|gb|EEE11878.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
          Length = 334

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 146/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLR+     +G+ L+  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQNNNRKPHGKLRVDMPGSIGRLLVIPSLCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++      + AAP YL+   EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLFEGVSVAAPAYLEKYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           +I++L +H  + +     +     +W   +D    E +++ +  VN   + +   + G G
Sbjct: 180 TIEDLSQHKAVNY--FSSRTGRTIDWSFLIDGKEVEVKMNGIVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V  +     L  ++         +   YP +   + K++ F +++  
Sbjct: 238 LIQPPLFMVLPHLREGRLKEVLPGFKPLPMPISVVYPHSRHLSPKVRVFVDWVAE 292


>gi|312883221|ref|ZP_07742949.1| putative transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369084|gb|EFP96608.1| putative transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 291

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 149/298 (50%), Gaps = 14/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS +W+ +  F  VA   SFT AA++L+ S + ISR+++ LE  + +KL  R  R ++LT
Sbjct: 1   MS-NWEGVSEFVAVAEVESFTSAAKKLNTSVAQISRRVASLEERLAVKLLNRTTRRVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++    +   LE  ++ + +    P G +++   +  G+  L   L +FL LYP
Sbjct: 60  EAGQLYYQQCKHLVEGLELAELAVTQMQSTPKGMVKVTAPVTFGEQNLAPLLHQFLELYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+L N+ +D+     D AIR+ + ++ S+++ ++L T  ++  A+P YL+   EP
Sbjct: 120 QVDLDLMLTNQQLDLIETGVDIAIRVGR-LRDSTMMAKRLATRQLYVCASPSYLEKFGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            ++ EL  H  +              W    ++     RIS  ++ NS  ++      G 
Sbjct: 179 HTLSELANHQCLAGSVDY--------WRFRNNKTEQSVRISGRIRCNSGYALHDAAKRGI 230

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+  LPD+ V+++    +LV ++ +       ++  YP+    + K++   +F+  K 
Sbjct: 231 GLVQLPDHYVQESLEQGDLVEVLAEYRDTREGIWALYPQNRNLSPKVRLLIDFLADKL 288


>gi|289677239|ref|ZP_06498129.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
          Length = 302

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 141/293 (48%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGS T A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDITPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  +  +   + +P G LR++  +      L   L  FL  Y ++ +
Sbjct: 64  SYYESALRLLAELEQVEQGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYREVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDVVLRIG-VLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G                D+P+       ++ N+   + +  + G GI  L
Sbjct: 183 DLHTHDCLPYGHSRQAQWR----FQGQDKPLTLNVSGRMRANNGELLRESAIAGLGITYL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV       +LVR+++D+     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVGAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFLRERL 291


>gi|187732313|ref|YP_001879005.1| LysR family transcriptional regulator [Shigella boydii CDC 3083-94]
 gi|187429305|gb|ACD08579.1| transcriptional regulator, LysR family [Shigella boydii CDC
           3083-94]
          Length = 304

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|331681589|ref|ZP_08382225.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
 gi|315300185|gb|EFU59422.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
 gi|323938750|gb|EGB34996.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1520]
 gi|331081163|gb|EGI52325.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
          Length = 304

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|300024296|ref|YP_003756907.1| LysR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526117|gb|ADJ24586.1| transcriptional regulator, LysR family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 333

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 140/298 (46%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +LRVF  V    SFT AAE L + +S++S  I  LE  VG +L  R  R +  T 
Sbjct: 21  MDRLGRLRVFVRVVDCKSFTKAAETLAIPRSTVSIAIKELEKLVGARLLSRTTRSVIPTH 80

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   S +    E  +   + +  +  G+L++     +G+ ++   + EF+  YP+
Sbjct: 81  DGVAFYEQCSRLVDDYEEVEGLFRTAHAELRGRLKVNVPGRIGRMIIAPAVPEFVSKYPN 140

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++ + ++ +D+ ++  DC +R+   +  S+LI R++  + +   A+P YL     P+
Sbjct: 141 IALEIGITDRTVDLQLEGIDCVVRVGD-LADSNLIARRIGDLDIINCASPDYLDRNGVPV 199

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L KH  I +        E + ++            S + V++   ++  C+ G G+
Sbjct: 200 RPSDLRKHRTIAYMPPSGGKPEPWQYVDAKGLQSLNVPPS-IAVDNAEMLIACCLAGLGL 258

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +P Y V+++     LV ++    +P   ++  YP     +G+L+AF  +     R+
Sbjct: 259 IQVPSYDVREHLRRGELVEVLPKYCSPPMPIHIVYPHRRHLSGRLQAFIEWATELLRE 316


>gi|168465308|ref|ZP_02699190.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194443748|ref|YP_002039490.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194402411|gb|ACF62633.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195632022|gb|EDX50542.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 304

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+ +  +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIAHFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +H  + F + +         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 EAVEELKRHLCLGFSEPVSLNTWP---IACSDGQLHEVECG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|257482701|ref|ZP_05636742.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330986619|gb|EGH84722.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012234|gb|EGH92290.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 302

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 141/293 (48%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRIG-VLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G                 +P+       ++ N+   +    V G GI  L
Sbjct: 183 DLHAHDCLPYGHSRQAQWR----FQVQGKPLILNISGRMRANNGELLRDTAVAGLGITYL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV     + +LVR+++D+     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFLRERL 291


>gi|167033101|ref|YP_001668332.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859589|gb|ABY97996.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 298

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 142/293 (48%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  +GSFT AA++L +S+ S+SR++  LE  +G++L  R  R L  T  G 
Sbjct: 8   YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++  + ++   +    G LR++  +    + L   L EFL L+P + +
Sbjct: 68  HYYQSALRLLGEVQQVEHDISGQAQALRGTLRLSAPLSFAMSHLGCLLTEFLQLHPLVDV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++  +     A+P YL+    P+  +
Sbjct: 128 EVDLSDRAVDLIGEGYDLALRIGA-LEDSSLIARRIANVERVYCASPAYLQARAVPVIPE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G       +         +         ++ N+   +    + G G+  L
Sbjct: 187 DLAGHDCLPYGHSRQVQWQ----FRQGGKAQAIQVTGRMRANNGELLRDAAIAGMGVTYL 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV     +  LV ++E+   P+  +   YP+  +    ++ F +F+  + 
Sbjct: 243 PTFIVGQALADGRLVSVLEEWTPPALQLSAVYPQHRQVARPVQGFVDFLRERL 295


>gi|186473446|ref|YP_001860788.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195778|gb|ACC73742.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 334

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 144/294 (48%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLLHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q  + KP+GKLRI     +G+ L+   L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQSGNKKPNGKLRIDMPGSIGRLLVIPALCEFHTKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y +    P 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVVRVGA-LQDSSLVARRIGLFEGVTCAAPAYFERAGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L++H  + +       + D+++L    + I     S + VN   + +   + G G+
Sbjct: 180 TLDDLEQHKAVNYFSSRTGRVMDWSFLVE-GKEIEVKMKSVVSVNDADAYVTCGLEGFGL 238

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P ++V     +  LV ++ D+      +   YP +   + K++ F ++I  
Sbjct: 239 IQPPLFMVLPHLRSGQLVEVLPDLKPLPMPISAVYPHSRHLSSKVRVFVDWIAE 292


>gi|163798048|ref|ZP_02191987.1| Transcriptional regulator [alpha proteobacterium BAL199]
 gi|159176644|gb|EDP61218.1| Transcriptional regulator [alpha proteobacterium BAL199]
          Length = 313

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 142/295 (48%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V  + S   AA  ++LS S +S+Q+S LE  +G++L  R  R ++LTE
Sbjct: 1   MDVLTGMTIFVAVVENSSLAGAARHMNLSPSVVSKQLSALEDRLGVRLLNRTTRRVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +  +  +   ++  +  +  +   P G L+I          +  +L  F+   P+
Sbjct: 61  VGSAYYERSKRILADVDEAEAAVSTAHSSPRGLLKITAPSTFAHRHVAPHLPGFMDRNPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+Q+++ ++ +D+  +  D AIR+ + ++ SSLI RKL   H    AAP YL     P 
Sbjct: 121 VQVQMLVADRLVDLVEEGVDLAIRIAQ-LKDSSLIARKLAPNHRKLVAAPDYLAKWGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             +E+  H LI+     P      +W   VD      R    +  N   SI+   + G+G
Sbjct: 180 RPEEITDHALISLQPGSPIN----DWHFVVDGEETVIRARGAIATNHGDSILALALSGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +A+L  ++V ++     L+ ++++ +     +Y  YP     + K++AF +++  
Sbjct: 236 LAMLAAHVVGEHIKAGRLISVLDEHVREDVPIYAVYPSNRHLSPKVRAFVDYLVE 290


>gi|330876977|gb|EGH11126.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 301

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 140/293 (47%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPVFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDLVLRIG-VLEDSSLIARRIASIDRVYCASPTYLAERGTPQQPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  + +G                 +P+       ++ N+   +    + G GI  L
Sbjct: 183 DLHSHECLPYGHSRHVQWR----FQGSGKPVSLNVSGRMRANNGELLKDAALAGLGITYL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV D     +LVR+++++     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVGDALRAGSLVRVLDELRPEPLTLSAVYPQHRQASRLVQAFIAFLRERL 291


>gi|293408297|ref|ZP_06652136.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471475|gb|EFF13958.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 304

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|320197306|gb|EFW71922.1| Transcriptional regulator LysR family, yafC [Escherichia coli
           WV_060327]
 gi|323191547|gb|EFZ76807.1| hypothetical protein ECRN5871_0163 [Escherichia coli RN587/1]
          Length = 304

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 142/294 (48%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L DY++        LV +M D + P        Y      + +++AF +F+
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFL 289


>gi|114047687|ref|YP_738237.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113889129|gb|ABI43180.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 293

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 147/293 (50%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA + +FT AA++L++S + +SRQI  LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEAENFTLAAQRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  + +    P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAITDLKGSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   +P ++ 
Sbjct: 124 NVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYMAASPSYVEKYGQPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELNQHNCLIGNHNYWRFIEN-------GRERNIKVRGNLICNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PDY ++++     L+  ++        ++  YP+    + K++   +++  K 
Sbjct: 236 PDYYIEEDIHAGRLISFLDAHREAKEGIWALYPQNRHLSAKVRVLVDYLAEKL 288


>gi|157159669|ref|YP_001456987.1| LysR family transcriptional regulator [Escherichia coli HS]
 gi|307314702|ref|ZP_07594300.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|157065349|gb|ABV04604.1| transcriptional regulator, LysR family [Escherichia coli HS]
 gi|306905821|gb|EFN36346.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|315059421|gb|ADT73748.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|323181620|gb|EFZ67035.1| hypothetical protein ECOK1357_5031 [Escherichia coli 1357]
 gi|323380020|gb|ADX52288.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323945576|gb|EGB41626.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|324115452|gb|EGC09394.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
          Length = 304

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 144/299 (48%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P +      Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVAMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|83944242|ref|ZP_00956697.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
 gi|83953283|ref|ZP_00962005.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83842251|gb|EAP81419.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83844786|gb|EAP82668.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
          Length = 301

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 137/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L EFL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPALSEFLADFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPAYFEKYGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L+ H L+ + +     M      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNDHKLLHYSNQSSGNMWKLTSPSGEKRQVRT--AGWLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP ++  D     LV   + D+   +  +Y  YP       K++AF +F+
Sbjct: 238 AYLPSFLYADAMEKGLVEDAIPDLPLETQGIYAVYPPGRFTQPKVRAFIDFL 289


>gi|298488058|ref|ZP_07006095.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157337|gb|EFH98420.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 302

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 141/293 (48%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNNEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRIG-VLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G                 +P+       ++ N+   +    V G GI  L
Sbjct: 183 DLHAHDCLPYGHSRQAQWR----FQVQGKPLILNISGRMRANNGELLRDTAVAGLGITYL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV     + +LVR+++D+     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFLRERL 291


>gi|86137203|ref|ZP_01055781.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85826527|gb|EAQ46724.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 305

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 12/305 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LET +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLETRLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L +FL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVSSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ SSL  RKL        A+P YL+    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMALRIGE-LEDSSLKARKLTETTKRMIASPSYLEQFGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L+ H L+ + +     +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNSHKLLHYSNQSSGNVWKITAPSGEKRQVRT--TGWLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA---- 294
           A LP Y+  +     LV  +M ++   +  +Y  YP       K++AF +F+        
Sbjct: 238 AYLPSYLYSEAMEEGLVEDVMPNLPMETQGIYAVYPPGKFTQPKVRAFIDFLAHSFAGKD 297

Query: 295 -RDWK 298
             DW+
Sbjct: 298 SEDWR 302


>gi|104783172|ref|YP_609670.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95112159|emb|CAK16886.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 300

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 148/304 (48%), Gaps = 14/304 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W+ +  F  VA SG FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TL+
Sbjct: 1   MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEERLQTRLLYRSTRRVTLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP
Sbjct: 61  EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++ L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P YL+    P
Sbjct: 121 QLRVEVELSNRTLDLLHEGMDLAIRLGR-LQDSRLVATRLAPRRMYLCASPAYLERYGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL +HN +           D   L    R I +      + NS  +++   + G G
Sbjct: 180 HSLSELARHNCLV-------GSSDLWALQQDGREISQRVQGNWRCNSGQAVLDAALQGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           +  LPDY V ++     LV ++E    P+  V+  YP+    + K++   + +     + 
Sbjct: 233 LCQLPDYYVLEHLNTGALVSLLEGHQPPNTAVWALYPQQRHLSPKVRRLVDHLKEGLAQL 292

Query: 295 RDWK 298
            +++
Sbjct: 293 PEYR 296


>gi|331645377|ref|ZP_08346481.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M605]
 gi|331045539|gb|EGI17665.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M605]
          Length = 304

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G++L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVRLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELIADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|78486341|ref|YP_392266.1| LysR family transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78364627|gb|ABB42592.1| transcriptional regulator, LysR family [Thiomicrospira crunogena
           XCL-2]
          Length = 301

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 7/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++VF  V  +G    AAEQL+L++S++SR+++ LE  +  KL  R  R  +LTE G 
Sbjct: 4   LEDIQVFVRVVEAGGIGKAAEQLNLAKSAVSRRLADLEDRLETKLINRTTRKSSLTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V   +               G LR+A  +  G   L   L  F   +P++ +
Sbjct: 64  IYYEKALSVLDSVTEMNQMTVSREASLEGTLRLAVPLSFGLEHLSPALDRFAQEHPNLTL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++++DI  +  D A R+   ++ S++  RK+  I     A+P YLK    P + +
Sbjct: 124 HVDFSDREVDIVEEGFDLAFRITD-LKDSTIQARKIAPIRFVMCASPGYLKKYGTPKTAE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H ++ +G    K  E ++ +   ++       S L  N+   ++     G GIAL 
Sbjct: 183 DLKQHKILRYGS---KGAESWHLIGPDNQTHHLNLPSHLYSNNGSFLLSMAKAGHGIALE 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P +I  +      L  ++ D   P    Y  YP+    + K +AF +F+  +
Sbjct: 240 PTFIAWEALATGELTPVLTDYRIPIMHAYAVYPQNRFLSQKARAFIDFLVAR 291


>gi|71736202|ref|YP_275955.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556755|gb|AAZ35966.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 298

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 142/296 (47%), Gaps = 12/296 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  + W+ L  F  VA  G FT AA++L +S S ISRQI  LE  +  +L YR  R + L
Sbjct: 1   MHINLWEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G         +    E     + + + +P G LR+   +  G+  +   +  F+ LY
Sbjct: 61  TEAGQTFLHHCQGLQDGREEALRAVGDLTSEPKGLLRMTCAVAYGERFITPLVTRFMDLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++ + L N+ +D+  +  D AIRL + +Q S ++  +L    M+  A+P Y++    
Sbjct: 121 PHLRVDIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCASPSYIERYGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+ EL++HN +  G        D   L    R   +      + NS  +++   + G 
Sbjct: 180 PHSLSELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGV 232

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LPDY V+   ++  LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 233 GLCQLPDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKE 288


>gi|293418302|ref|ZP_06660737.1| HTH-type transcriptional regulator yafC [Escherichia coli B088]
 gi|291324830|gb|EFE64245.1| HTH-type transcriptional regulator yafC [Escherichia coli B088]
          Length = 304

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIVRGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|82542801|ref|YP_406748.1| transcriptional regulator LYSR-type [Shigella boydii Sb227]
 gi|300936079|ref|ZP_07151021.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|81244212|gb|ABB64920.1| putative transcriptional regulator LYSR-type [Shigella boydii
           Sb227]
 gi|300458754|gb|EFK22247.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|309700410|emb|CBI99699.1| LysR-family transcriptional regulator [Escherichia coli ETEC
           H10407]
 gi|320179845|gb|EFW54791.1| Transcriptional regulator LysR family, yafC [Shigella boydii ATCC
           9905]
 gi|332093751|gb|EGI98806.1| hypothetical protein SB359474_2389 [Shigella boydii 3594-74]
          Length = 304

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|16128195|ref|NP_414744.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107083|ref|AP_000863.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|157155058|ref|YP_001461373.1| LysR family transcriptional regulator [Escherichia coli E24377A]
 gi|170079839|ref|YP_001729159.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|191167015|ref|ZP_03028837.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|238899601|ref|YP_002925397.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|256024153|ref|ZP_05438018.1| putative DNA-binding transcriptional regulator [Escherichia sp.
           4_1_40B]
 gi|300819822|ref|ZP_07100008.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300949360|ref|ZP_07163372.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300958297|ref|ZP_07170440.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|301028966|ref|ZP_07192128.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|301645477|ref|ZP_07245414.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|307136803|ref|ZP_07496159.1| putative DNA-binding transcriptional regulator [Escherichia coli
           H736]
 gi|309797923|ref|ZP_07692303.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|331640658|ref|ZP_08341805.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
 gi|401473|sp|P30864|YAFC_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator
           yafC
 gi|216646|dbj|BAA02171.1| ORF304 [Escherichia coli W3110]
 gi|1552778|gb|AAB08630.1| hypothetical [Escherichia coli]
 gi|1786401|gb|AAC73313.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4902945|dbj|BAA77879.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|157077088|gb|ABV16796.1| transcriptional regulator, LysR family [Escherichia coli E24377A]
 gi|169887674|gb|ACB01381.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|190902908|gb|EDV62635.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|238862255|gb|ACR64253.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|260450594|gb|ACX41016.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|299878065|gb|EFI86276.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|300315003|gb|EFJ64787.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300451243|gb|EFK14863.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300527580|gb|EFK48642.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|301076266|gb|EFK91072.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|308118463|gb|EFO55725.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|315134893|dbj|BAJ42052.1| putative DNA-binding transcriptional regulator [Escherichia coli
           DH1]
 gi|320201197|gb|EFW75780.1| Transcriptional regulator LysR family, yafC [Escherichia coli
           EC4100B]
 gi|323943433|gb|EGB39584.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|331040032|gb|EGI12240.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
          Length = 304

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTE--PASLNTWP-IARSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|71277995|ref|YP_267565.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71143735|gb|AAZ24208.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 289

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 142/293 (48%), Gaps = 11/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA + SFT A++++ +S + +SRQIS LE  + IKLFYR  R ++LTE+
Sbjct: 2   MQWEGISEFVYVAENESFTLASKKMAISTAQVSRQISALEKRLNIKLFYRTTRKVSLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    V   L+  +  +     KP GK+++   +  G+  +   +  FL  Y D+
Sbjct: 62  GRIFYQHCRSVLDGLDAAERAITNLQSKPQGKIKLTAPVTYGEKQILPLVNNFLKQYSDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++   L N+ +D+  D  D AIRL   +  SS++ +KL        A+P YL     P S
Sbjct: 122 EVSAYLSNQRVDLVEDGYDLAIRLGN-LSDSSMMAKKLGERSNFVCASPLYLHKHGIPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I EL+KH+ +           ++      D+         L+ NS  S+    + G GI 
Sbjct: 181 ISELNKHSCLL-------GTNNYWHFRESDKEKSVRITGRLRYNSGYSLTDAALKGLGIV 233

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPDY VK +     LV ++++   P   ++  YP+    + K++   +++  
Sbjct: 234 QLPDYYVKQHLQSGELVTLLDNYRAPDEGIWAIYPQNRHLSPKIRLLVDYLVA 286


>gi|93006100|ref|YP_580537.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis
           K5]
 gi|92393778|gb|ABE75053.1| transcriptional regulator, LysR family [Psychrobacter
           cryohalolentis K5]
          Length = 303

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 140/292 (47%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R F  V   GSF++AA  L LS   +S+ +S LE ++  +L  R  R ++LTE
Sbjct: 1   MDRIDAMRAFVAVVTEGSFSNAANTLQLSPQLVSKYVSKLEEQLNSRLLNRTTRKVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS       ++   ++  + +L      P G LRI+  +      +   + +F + YP 
Sbjct: 61  AGSHYFGHAQQILLSIDDMESKLGGLQQNPKGVLRISAPVSFALKHMAKLITDFQIHYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +DI  +  D A+R+ + ++SSSLI +K+  I +   AAP YL     P 
Sbjct: 121 VKVDLQLTDRKVDIVEEGFDVALRIGQ-LKSSSLIAKKVAPIRVMLCAAPDYLNKHGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +++ +H  + +  +     +D   L    +     + S L+ N+   ++   + G+GI
Sbjct: 180 QPEDIAEHRYLHYSYMNMDGKDDIYQLL---KAKYLKQGSELRSNNGDVLVDAAIAGAGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P +I+ +   +  LV ++  +   +  +Y  Y        K++ F +F+
Sbjct: 237 VLQPTFIISEALSSGKLVVVLPKLEPEALGLYAVYAHRKLLPHKVRCFIDFV 288


>gi|53717239|ref|YP_106069.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53721325|ref|YP_110310.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|67639933|ref|ZP_00438760.1| putative HTH-type transcriptional regulator YhjC [Burkholderia
           mallei GB8 horse 4]
 gi|76817757|ref|YP_336995.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|124381525|ref|YP_001025935.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126445248|ref|YP_001061517.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126446273|ref|YP_001078024.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126456478|ref|YP_001074457.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134280695|ref|ZP_01767405.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|166999802|ref|ZP_02265632.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167722311|ref|ZP_02405547.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167741307|ref|ZP_02414081.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167818483|ref|ZP_02450163.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167826870|ref|ZP_02458341.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167848383|ref|ZP_02473891.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167896938|ref|ZP_02484340.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167905321|ref|ZP_02492526.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167913619|ref|ZP_02500710.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167921562|ref|ZP_02508653.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217422973|ref|ZP_03454475.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226194807|ref|ZP_03790399.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237507442|ref|ZP_04520157.1| LysR substrate binding domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|242312205|ref|ZP_04811222.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254176362|ref|ZP_04883020.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254189398|ref|ZP_04895908.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195563|ref|ZP_04901991.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254200925|ref|ZP_04907290.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254204888|ref|ZP_04911241.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254264083|ref|ZP_04954948.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254299455|ref|ZP_04966904.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254359007|ref|ZP_04975279.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52211739|emb|CAH37738.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|52423209|gb|AAU46779.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76582230|gb|ABA51704.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126224739|gb|ABN88244.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126230246|gb|ABN93659.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126239127|gb|ABO02239.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134247717|gb|EBA47801.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147748537|gb|EDK55612.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754474|gb|EDK61538.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148028194|gb|EDK86154.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157809376|gb|EDO86546.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157937076|gb|EDO92746.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160697404|gb|EDP87374.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169652310|gb|EDS85003.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|217393881|gb|EEC33901.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225933151|gb|EEH29146.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|234999647|gb|EEP49071.1| LysR substrate binding domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|238520553|gb|EEP84012.1| putative HTH-type transcriptional regulator YhjC [Burkholderia
           mallei GB8 horse 4]
 gi|242135444|gb|EES21847.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243064118|gb|EES46304.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254215085|gb|EET04470.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|261826363|gb|ABM99362.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 334

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 145/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLR+     +G+ +L  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQVNNRKPHGKLRVDMPGSIGRLILIPSLCEFHSRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLFEGTTVASPAYLEKYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           +I+EL +H  + +     +     +W   +D    E +++ L  VN   + +   + G G
Sbjct: 180 TIEELAQHKAVNY--FSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V  +     L  ++         +   YP +   + K++ F +++  
Sbjct: 238 LIQPPLFMVLPHLRNGTLKEVLPGHKPLPMPISVVYPHSRHLSPKVRVFVDWVAE 292


>gi|193063161|ref|ZP_03044252.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194427549|ref|ZP_03060097.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|218552783|ref|YP_002385696.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|218693670|ref|YP_002401337.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|260842434|ref|YP_003220212.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|300905649|ref|ZP_07123395.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|301305765|ref|ZP_07211851.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|192931069|gb|EDV83672.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194414319|gb|EDX30593.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|218350402|emb|CAU96087.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|218359551|emb|CAQ97091.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|257757581|dbj|BAI29078.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|300402541|gb|EFJ86079.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300838940|gb|EFK66700.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|315253522|gb|EFU33490.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|323160263|gb|EFZ46220.1| hypothetical protein ECE128010_3502 [Escherichia coli E128010]
          Length = 304

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 144/299 (48%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++ + + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMASAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTE--PASLNTWP-IARSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|145301024|ref|YP_001143865.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853796|gb|ABO92117.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 301

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 141/296 (47%), Gaps = 13/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA  G FT AA +L +S + +SRQ++ LE  +  KL  R  R + LTE G 
Sbjct: 4   WEGICEFVSVAEQGGFTPAARKLGVSVAQVSRQVAQLEDRLQAKLLLRTTRQVRLTELGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   L   ++ +      P G LRI   +  G++ +   + +F++ +P +++
Sbjct: 64  IYYRHCRQLLDNLYEAELAVGRHQAVPQGSLRITAPVSYGESRIAPLVNDFMVRFPQLEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L N+ +D+  +  D AIRL   ++ SSL+ RKL     +  A+P Y      P S+ 
Sbjct: 124 TLNLTNQLLDLVHEGYDLAIRLGH-LKDSSLVARKLAQRVPYVCASPAYTARHGMPNSLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  +              W  T+D RP        LQ NS  +++   + G GI  
Sbjct: 183 ELTRHTCLV--------GNGDEWYFTLDGRPHSVRVHGLLQCNSGHALLDAALKGIGIIQ 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LPDY V D+     L+ ++ ++  P   ++  YP     + K++   +++  +  D
Sbjct: 235 LPDYYVSDHLARGELIELLPELRAPEEGIWALYPHNRHLSPKVRLLVDYLAERLSD 290


>gi|320173689|gb|EFW48878.1| Transcriptional regulator LysR family, yafC [Shigella dysenteriae
           CDC 74-1112]
          Length = 304

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 142/294 (48%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L DY++        LV +M D + P        Y      + +++AF +F+
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFL 289


>gi|218703457|ref|YP_002410976.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|293403287|ref|ZP_06647378.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298378901|ref|ZP_06988782.1| HTH-type transcriptional regulator yafC [Escherichia coli FVEC1302]
 gi|300900036|ref|ZP_07118233.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|331661578|ref|ZP_08362501.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
 gi|218430554|emb|CAR11420.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|291429140|gb|EFF02160.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298280014|gb|EFI21518.1| HTH-type transcriptional regulator yafC [Escherichia coli FVEC1302]
 gi|300356441|gb|EFJ72311.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|331060000|gb|EGI31964.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
          Length = 304

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETLDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|56414624|ref|YP_151699.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363552|ref|YP_002143189.1| hypothetical protein SSPA2344 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56128881|gb|AAV78387.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095029|emb|CAR60575.1| hypothetical transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 304

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 141/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+L 
Sbjct: 1   MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLA 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKHFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +H  + F + +         +A  D  + E +   +  NS  ++ Q C+ G+G
Sbjct: 180 ETVEELKRHLCLGFSEPVSLNTWP---IACSDGQLHEIKCG-ISSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV  + D   P        Y      + +++AF +F+    R
Sbjct: 236 IACLSDYMIDKEIARGELVEPLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIR 294


>gi|83648931|ref|YP_437366.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83636974|gb|ABC32941.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 299

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 145/292 (49%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L+VF  VA +GSFT AA+   L +S++S  +  LE  +G +L +R  R ++LT 
Sbjct: 1   MDRIDALQVFARVAETGSFTRAADLCELPRSTVSSVVQKLEASLGARLLHRTTRRVSLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  ++E  +   +E   + SGKL++      G  ++   L +F   YP+
Sbjct: 61  DGAALLERCRHLLTEIEEIESMFREPGARVSGKLKVDVPSRFGSRVIAPALPDFFERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+  P  S+SL+ R L  + +   A+P YL     P 
Sbjct: 121 IELELGATDRTVDLIQEGVDCVVRVGDPG-SASLVARPLGKMELVNCASPAYLARYGAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  + F        E + ++   +    E R S + VN+  + +   + G G+
Sbjct: 180 TPDDLSEHRAVRFASPNTGRAEPWEYVQDGELHYVEMR-SWVTVNNAETYVACALAGMGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P+Y V+    + +LV ++ +    +  +Y  YP   + + +++ F +++
Sbjct: 239 LQAPEYDVRHLLQSGDLVEVLPNARAEAMQIYAMYPHRRQLSRRVRVFIDWV 290


>gi|15799884|ref|NP_285896.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 EDL933]
 gi|15829458|ref|NP_308231.1| transcriptional regulator [Escherichia coli O157:H7 str. Sakai]
 gi|168758941|ref|ZP_02783948.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168765058|ref|ZP_02790065.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168769971|ref|ZP_02794978.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168776188|ref|ZP_02801195.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168782933|ref|ZP_02807940.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168789651|ref|ZP_02814658.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|168800390|ref|ZP_02825397.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|195938580|ref|ZP_03083962.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807266|ref|ZP_03249603.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208812691|ref|ZP_03254020.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208821909|ref|ZP_03262229.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209397859|ref|YP_002268811.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217324524|ref|ZP_03440608.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254791335|ref|YP_003076172.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223761|ref|ZP_05938042.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255829|ref|ZP_05948362.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281025|ref|YP_003497843.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|12512936|gb|AAG54504.1|AE005196_2 putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EDL933]
 gi|13359660|dbj|BAB33627.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768453|gb|EDU32297.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188999584|gb|EDU68570.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189354341|gb|EDU72760.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189361022|gb|EDU79441.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189365066|gb|EDU83482.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189370769|gb|EDU89185.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|189377333|gb|EDU95749.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|208727067|gb|EDZ76668.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208733968|gb|EDZ82655.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208742032|gb|EDZ89714.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209159259|gb|ACI36692.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209745544|gb|ACI71079.1| putative transcriptional regulator [Escherichia coli]
 gi|209745546|gb|ACI71080.1| putative transcriptional regulator [Escherichia coli]
 gi|209745548|gb|ACI71081.1| putative transcriptional regulator [Escherichia coli]
 gi|209745550|gb|ACI71082.1| putative transcriptional regulator [Escherichia coli]
 gi|209745552|gb|ACI71083.1| putative transcriptional regulator [Escherichia coli]
 gi|217320745|gb|EEC29169.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254590735|gb|ACT70096.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|290760898|gb|ADD54859.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190271|gb|EFW64921.1| Transcriptional regulator LysR family, yafC [Escherichia coli
           O157:H7 str. EC1212]
 gi|320638228|gb|EFX07956.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. G5101]
 gi|320643612|gb|EFX12756.1| LysR family transcriptional regulator [Escherichia coli O157:H-
           str. 493-89]
 gi|320650348|gb|EFX18825.1| LysR family transcriptional regulator [Escherichia coli O157:H-
           str. H 2687]
 gi|320654623|gb|EFX22624.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660191|gb|EFX27701.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320665442|gb|EFX32504.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. LSU-61]
 gi|326338816|gb|EGD62635.1| Transcriptional regulator LysR family, yafC [Escherichia coli
           O157:H7 str. 1044]
 gi|326342393|gb|EGD66173.1| Transcriptional regulator LysR family, yafC [Escherichia coli
           O157:H7 str. 1125]
          Length = 304

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-VACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|126740855|ref|ZP_01756540.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126718151|gb|EBA14868.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 306

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 141/298 (47%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LET +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLETRLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L +FL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D AIR+ + ++ SSL  RKL        A+P YL+    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAIRIGE-LEDSSLRARKLTETTKRMIASPAYLEQFGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L+ H L+ + +     +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNTHKLLHYSNQSSGNVWRITAPSGEKRQVRT--TGWLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP Y+  +  +  LV  +M  +   +  +Y  YP       K++AF +F+     D
Sbjct: 238 AYLPSYLYAEALSEGLVEDVMPSLPMETQGIYAVYPPGKFTQPKVRAFIDFLAHAFAD 295


>gi|193067760|ref|ZP_03048727.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|192959172|gb|EDV89608.1| transcriptional regulator, LysR family [Escherichia coli E110019]
          Length = 304

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +    L   +K F   YP
Sbjct: 61  EEGQRYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLYFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTE--PASLNTWP-IARSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|209917395|ref|YP_002291479.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|256020174|ref|ZP_05434039.1| putative transcriptional regulator [Shigella sp. D9]
 gi|300823392|ref|ZP_07103522.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300926572|ref|ZP_07142358.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|301326092|ref|ZP_07219488.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|331666449|ref|ZP_08367329.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331675866|ref|ZP_08376583.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332281337|ref|ZP_08393750.1| transcriptional regulator [Shigella sp. D9]
 gi|209910654|dbj|BAG75728.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|300417430|gb|EFK00741.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300524010|gb|EFK45079.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300847152|gb|EFK74912.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|324020680|gb|EGB89899.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
 gi|331066294|gb|EGI38172.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331076426|gb|EGI47703.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332103689|gb|EGJ07035.1| transcriptional regulator [Shigella sp. D9]
          Length = 304

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGQRYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTE--PASLNTWP-IARSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|167838388|ref|ZP_02465247.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 296

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 136/294 (46%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F   A + SF  A  +L +S S++ + I+ LE  +G++LF+R  R +TLT++G
Sbjct: 3   NLNGIVAFVRTAETLSFVAAGRKLGVSASAVGKTIAKLERTLGVRLFHRTTRKVTLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H        +L   Q  + +S+  P G+LR++  + +G   L   L EF   YPD++
Sbjct: 63  RHFHERCHRALEELRDAQASVSQSAQTPRGRLRVSLPV-IGYRFLLPVLPEFKRRYPDVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR    +  SSL+ R+L        A+P YL     P ++
Sbjct: 122 LDLDFNDRLVDVVEGGFDAVIRSGA-LSDSSLMSRRLGPFSFLLCASPAYLAQAGAPRTL 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +ELD H  + +    P   +   W    D        + +  N+  ++    + G GI  
Sbjct: 181 RELDAHACVRY--RFPTTGKLQPWGLLPDGSEPPNLHTAMTCNNMEALRAAVMSGFGIGY 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++ +D   +  L  +++            +P   + + K++ F +F+  + 
Sbjct: 239 MPDFLARDALADGALATVLDAYRIGPGQFSILWPSNRQLSPKVRVFVDFVCERL 292


>gi|289662529|ref|ZP_06484110.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669761|ref|ZP_06490836.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 298

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 132/294 (44%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  VA    F+ AAE L  S +S++RQ++ LE  +G +L  R  R ++LT 
Sbjct: 1   MDTLDAMRVFTAVAERSGFSAAAEALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  ++   ++   L+  +  +   +++P+G LR+   +  G   L   L  F   YP 
Sbjct: 61  AGSAYYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  D AIR+ +   +  LI R+L  + M   A+P YL     P 
Sbjct: 121 VELDLSLSDRLVDMVEEGFDVAIRITRQ-PAPMLIARQLGKVRMLPCASPAYLARAGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +         D          I       L+ N+   +    + G GI
Sbjct: 180 HPSDLAGHECLLYHYSPSG---DEVRFQGSQGDIDVRLHGGLRANNGHVLNAAALAGQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + PD++ + +     LVRI+ +       ++  Y        K+++F +++  
Sbjct: 237 VMQPDFLAEPHLAAGRLVRILPEYTLAEIGIFAVYTSRSHLAPKVRSFIDYLIE 290


>gi|148547184|ref|YP_001267286.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511242|gb|ABQ78102.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 313

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 139/293 (47%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  +GSFT AA++L +S+ S+SR++  LE  +G++L  R  R L  T  G 
Sbjct: 23  YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 82

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++  + ++   +    G LR++  +      L   L EFL L+P + +
Sbjct: 83  HYYQSALRLLGEVQQVEHDISGQAQVLRGTLRLSAPLSFAMAHLGCLLTEFLQLHPQVDV 142

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++ ++     A+P YL+    P    
Sbjct: 143 EVDLSDRAVDLIGEGYDLALRIGA-LEDSSLIARRIASVERVYCASPAYLQARGAPGKPD 201

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ + +G       +         +         ++ N+   +    + G G+  L
Sbjct: 202 ELAAHDCLPYGHSRQVQWQ----FHKGGKTQAIQVTGRMRANNGELLRGAAIAGMGVTYL 257

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV        LV ++++   P+  +   YP+  +    ++ F +F+  + 
Sbjct: 258 PTFIVGQALAEGQLVTVLDEWRPPALQLSAVYPQHRQVARPVQGFVSFLRARL 310


>gi|260914028|ref|ZP_05920501.1| LysR family transcriptional regulator [Pasteurella dagmatis ATCC
           43325]
 gi|260631661|gb|EEX49839.1| LysR family transcriptional regulator [Pasteurella dagmatis ATCC
           43325]
          Length = 296

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + VF  V  + SFT AA Q ++S +  S+ ++ LE ++  +L  R  R ++ TE
Sbjct: 1   MDKLNAISVFCKVIETQSFTQAAAQQNISVAMASKLVAQLEEQLKTRLLQRTTRKISPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  +LE  +  +   +    G L I+   D G   +  NL  F+  +P+
Sbjct: 61  AGLVYYQRCLPILVELEEAESSISSLATALQGNLTISVPRDFGLLFITPNLASFIKAHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I +  +++ +D+  +  D A+R+   +Q SSL+ +K+ T  MH  A+P YL+    P 
Sbjct: 121 LHIDISFNDRMMDLISEGYDLALRIGH-LQDSSLVAKKIATASMHVVASPEYLEKNGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +EL KH+ + +     +   +F     + R       S +  N+ +++M+    G GI
Sbjct: 180 TPEELHKHHCLLYKARGNQIYWEFQQKKQLCR---VKMQSRMVCNNGMTLMEIAKTGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P + +++   N  LV I+ D       +   YP       K KAF  F+
Sbjct: 237 INTPSFFIQEALKNGELVEILADYEQQPLDINVVYPHRRHLPAKTKAFIEFL 288


>gi|260429586|ref|ZP_05783563.1| LysR substrate binding domain protein [Citreicella sp. SE45]
 gi|260420209|gb|EEX13462.1| LysR substrate binding domain protein [Citreicella sp. SE45]
          Length = 307

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 7   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L EFL  +PD
Sbjct: 67  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGEFLAAFPD 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P 
Sbjct: 127 ITVNMVLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTDTTKRMIASPAYFQKFGRPA 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ + +     +      +   R +       L VN   S++  C+ G GI
Sbjct: 186 RIDDLNEHKLLHYSNQSSGNVWKVTAPSGEKRQVRT--AGWLSVNDGQSLLNACIAGLGI 243

Query: 242 ALLPDYIVKDNPN--LVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP Y+  D     LV   + D+   S  +Y  YP       K++AF +F+     D
Sbjct: 244 AYLPSYLYADAMKQGLVEDAIPDLPVESQGIYAVYPPGRFTQPKVRAFIDFLVHAFAD 301


>gi|170681248|ref|YP_001742331.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|218698845|ref|YP_002406474.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|170518966|gb|ACB17144.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
 gi|218368831|emb|CAR16579.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
          Length = 304

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|289624442|ref|ZP_06457396.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866141|gb|EGH00850.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 302

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 141/293 (48%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNNEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRIG-VLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G                 +P+       ++ N+   +    V G GI  L
Sbjct: 183 DLHAHDCLPYGHSRQAQWR----FQVQGKPLILNISGRMRANNGELLRDTAVAGLGITYL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV     + +LVR+++D+     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQDRQASRPVQAFIEFLRQRL 291


>gi|83716061|ref|YP_440296.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167617021|ref|ZP_02385652.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257140926|ref|ZP_05589188.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83649886|gb|ABC33950.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 334

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 143/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLR+     +G+ ++  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQSNNRKPHGKLRVDMPGSIGRLIVIPSLCEFHSRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGIDCVIRVGA-LQDSSLVARRVGLFEGTTVASPAYLEKYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           +I+ L +H  + +     +      W   +D    E +++ L  VN   + +   + G G
Sbjct: 180 TIEALAQHKAVNY--FSSRTGRTIEWAFLIDGKEVEVKMNGLVSVNDADAYVTCGIEGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V  +     L  ++         +   YP +   + K++ F +++  
Sbjct: 238 LIQPPLFMVLPHLRNGTLKEVLPGYKPLPMPISVVYPHSRHLSPKVRVFVDWVAE 292


>gi|83745678|ref|ZP_00942736.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207724811|ref|YP_002255208.1| hypothetical protein RSMK03208 [Ralstonia solanacearum MolK2]
 gi|83727755|gb|EAP74875.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206590036|emb|CAQ36997.1| hypothetical protein RSMK03208 [Ralstonia solanacearum MolK2]
          Length = 314

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 144/293 (49%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T 
Sbjct: 1   MDRLQAMQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   LE T+    +S+    G LRI     +G+ LL   +++F   YPD
Sbjct: 61  DGAAYYERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+++ + ++ +D+  +  DCA+R+ + +Q S+L+ R++  + M   A+P YL     P 
Sbjct: 121 LQLEVGMSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGQLSMVNCASPDYLARYGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           ++++L  H  I      P+     +W   +D      ++  L  VN   S M   + G G
Sbjct: 180 TLEDLQDH--IAVNYFSPRNGRRMDWDFVIDGQKQIHKVRSLVSVNDAESAMACALYGLG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     ++  ++     LV ++ D I+ S  V   YP     + K++ F +++
Sbjct: 238 LLQTARFLAYEHLMSGQLVEVLPDYISESLPVSVIYPHNRHLSPKVRVFVDWV 290


>gi|325496134|gb|EGC93993.1| hypothetical protein ECD227_0231 [Escherichia fergusonii ECD227]
          Length = 304

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L +H  + F +           +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETLDDLKQHVCLGFTEPASLNTWP---IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|220934853|ref|YP_002513752.1| putative transcriptional regulator [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996163|gb|ACL72765.1| putative transcriptional regulator [Thioalkalivibrio sp. HL-EbGR7]
          Length = 308

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 150/303 (49%), Gaps = 10/303 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + +R F  +  +GS T AA +L +++S +S ++S LE  VG +L  R +R L+LTEQ
Sbjct: 1   MKLEGIRTFVAIVEAGSITAAARRLGVAKSVVSHRLSELEDSVGARLIQRSSRRLSLTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   HR ++ +  +L+     + E   +  G LR+A  +  G   L   L  FL  +P I
Sbjct: 61  GEMFHRFSARMLGELDEAVSRIAEEGHELRGPLRVAAPMSFGLLHLGPALYPFLREHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L L+++ +D+  +  D AIR+ + +  S+L+ R+LV+      A+P YL     P  
Sbjct: 121 QLDLDLNDRMVDLVGEGYDMAIRIGQ-LPDSTLVARRLVSSCSLLVASPAYLAEHGRPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +H  I + ++ P     F      D  +     + LQVN+  ++    + G G+A
Sbjct: 180 VEALSEHRGILYSNVHPNDQLRFR---RADGTVTGHFATALQVNNGDAMRDAAIAGLGLA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD--- 296
           ++PD+IV     +  LV +  D   P   VY  +P+    T K++A    +     D   
Sbjct: 237 VIPDFIVWQALADGRLVVVELDGSLPEVGVYAVFPQNRHLTAKVRALTEHLAASFGDPPY 296

Query: 297 WKF 299
           WKF
Sbjct: 297 WKF 299


>gi|301021452|ref|ZP_07185476.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|300398088|gb|EFJ81626.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
          Length = 304

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETINDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|281177428|dbj|BAI53758.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|330910054|gb|EGH38564.1| transcriptional regulator LysR family, yafC [Escherichia coli AA86]
          Length = 304

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELIADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|325919259|ref|ZP_08181303.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325550264|gb|EGD21074.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 311

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  VA    F+ AA+ L  S +S++RQ++ LE  +G +L  R  R ++LT 
Sbjct: 1   MDTLDAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++   ++   L+  +  +   +++P+G LR+   +  G   L   L  F   YP 
Sbjct: 61  AGTAYYQRCLQLLADLDDLEATVGAQALEPAGVLRVNAPVSYGIERLAALLPGFRARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  D AIR+ +   + +LI R+L  + +   AAP YL     P 
Sbjct: 121 VELDLSLSDRLVDMVEEGFDVAIRITRQ-PAPTLIARQLGKVRLLTCAAPAYLARAGTPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +          F+     D          L+ N+   +    V G GI
Sbjct: 180 HPSDLAGHECLLYHYSPNGDEVRFH---GPDGDTTVRIHGGLRANNGHVLSAAAVAGQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+ PD++  D+     LVRI+ +       ++  Y        K+++F +++  
Sbjct: 237 AMQPDFLADDHLAAGRLVRILPEYELADIGIFAVYTSRSHLAPKVRSFIDYLVE 290


>gi|323963761|gb|EGB59263.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|327254927|gb|EGE66537.1| hypothetical protein ECSTEC7V_0219 [Escherichia coli STEC_7v]
          Length = 304

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 141/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYIARYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +           +A  D  + E + S L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTEPASLNTWP---IACSDGQLHEVQYS-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|254254648|ref|ZP_04947965.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
 gi|124899293|gb|EAY71136.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
          Length = 335

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 145/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 2   MDRLQAMQVFTRVVDTSSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 62  DGAAYYERCVRILADVEETEASFQNNNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPD 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +  SSL+ R++      + AAP YL+   EP 
Sbjct: 122 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LLDSSLVARRVGLFEGVSVAAPAYLEKYGEPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           +I++L +H  + +     +     +W   +D    E +++ +  VN   + +   + G G
Sbjct: 181 TIEDLSQHKAVNY--FSSRTGRTIDWAFLIDGKEVEVKMNGIVSVNDADAYVTCGLEGFG 238

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V     +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 239 LIQPPLFMVLPHLRDGRLKEVLPGFKPLPLPISVVYPHSRHLSPKVRVFVDWIAE 293


>gi|84389410|ref|ZP_00991216.1| putative transcriptional regulator [Vibrio splendidus 12B01]
 gi|84376925|gb|EAP93798.1| putative transcriptional regulator [Vibrio splendidus 12B01]
          Length = 289

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 145/294 (49%), Gaps = 11/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA   SFT AA++L  S + ISR+++ LE  + +KLF R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAERESFTGAAQKLATSVAQISRRVANLEERLAVKLFNRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P G L++   +  G+  L   L +FL L+P ++
Sbjct: 63  QLYYQQCKLLVEGLEIAELAVTQMQSTPKGLLKVTAPVTYGERQLAPILHQFLKLHPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L N+ +D+     D AIRL + ++ SSL+ +KL    ++  A+P Y++   EP ++
Sbjct: 123 LELMLTNQKLDLIDSGVDVAIRLGR-LEDSSLVAKKLSQRQLYVCASPEYIERYGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +          E +       RP        ++ NS L+++       G+  
Sbjct: 182 SELSHHQCLV------GGFEHWR-FKENKRPRSVRVNGRIRCNSGLALLDAAKQSIGLVQ 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP+Y V ++     LV ++ D       ++  YP+    + K++   +F+  + 
Sbjct: 235 LPEYYVSEDLESGELVEVLSDYRDDKEGIWALYPQNRNLSSKVRLLVDFLSEQL 288


>gi|229588826|ref|YP_002870945.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360692|emb|CAY47550.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 298

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 139/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA    FT AAE+L +S S ISRQ++ LE  +  +L YR  R +TLTE G 
Sbjct: 6   WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQVARLEERLQTRLLYRSTRKVTLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMALYPQLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S ++  +L    M+  A+P YL     P S+ 
Sbjct: 126 DIELSNRPLDLVHEGLDLAIRLGR-LQDSRMVASRLAPRRMYLCASPSYLARYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +           D   LA   R   +      + NS  +++   + G G+  L
Sbjct: 185 ELSRHNCLI-------GSSDIWQLAQDGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V ++     LV ++E    P+  V+  YP+    + K++   +F+  
Sbjct: 238 PDYYVLEHLHSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDFLKE 288


>gi|167835265|ref|ZP_02462148.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 298

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 4/288 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A +GSF  A   L LS   + + +  LET  G++L  R  R  +LTE G   +
Sbjct: 1   MAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  + +            P G LRI   I  G + L   L  +L  YP++++ L 
Sbjct: 61  ERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYLRAYPEVRVDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  D  IR+  P+  S LI R L    +   A+P YL     P +  +L 
Sbjct: 121 LSDRVVDFVDEGYDAVIRIA-PLADSGLIARPLAPYRLVLCASPAYLAERGTPATPADLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F         ++ + +   +       S L VN+  ++    + G GI L P  
Sbjct: 180 AHECLGFSYSGQPAALEWPFESAQGQQHSVRVRSRLAVNNGAALRMAALDGLGIILQPAE 239

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +V+D+     LVR++     P+  ++  Y    + T KL++F + +  
Sbjct: 240 LVRDDLAAGRLVRLLPGHEPPARPIHLLYSPDRQPTPKLRSFIDAVMA 287


>gi|186474802|ref|YP_001856272.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191261|gb|ACC69226.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 362

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL     P 
Sbjct: 121 VIPDVTLVDRQVDLVEEGFDVGVVIARHMRSASIVTRRLTTGCMTVCATPAYLDKHGTPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG GI
Sbjct: 181 RPEQLLEHPCLSLPS---EYWGDERVFTGPDGEVRVRPTNVIVANNTEMLRQFALLGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGRDTTRGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|283783992|ref|YP_003363857.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282947446|emb|CBG86993.1| LysR-family transcriptional regulator [Citrobacter rodentium
           ICC168]
          Length = 305

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 141/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSVLQEMAAAETEIMETRTTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + L+     I++     D AIR  K +  SSL  R L T +    A+P Y+     P
Sbjct: 121 DITLSLVSSETFINLIERKVDVAIRAGK-LTDSSLRARPLFTSYRKIIASPEYIARFGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L +H  + F + +         +A  D  + E     +  NS  ++ Q C+ G+G
Sbjct: 180 ETVEDLKQHLCLGFSEPVSLNTWP---VACCDGQLHEIECG-ISSNSGETLKQLCLTGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D   P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|167578918|ref|ZP_02371792.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 334

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 143/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLR+     +G+ ++  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQSNNRKPHGKLRVDMPGSIGRLIVIPSLCEFHSRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLFEGTTVASPAYLEKYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           +I+ L +H  + +     +      W   +D    E +++ L  VN   + +   + G G
Sbjct: 180 TIEALAQHKAVNY--FSSRTGRTIEWAFLIDGKEVEVKMNGLVSVNDADAYVTCGIEGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V  +     L  ++         +   YP +   + K++ F +++  
Sbjct: 238 LIQPPLFMVLPHLRNGTLKEVLPGYKPLPMPISVVYPHSRHLSPKVRVFVDWVAE 292


>gi|289650318|ref|ZP_06481661.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 302

 Score =  268 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 141/293 (48%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEVEQVEQGITGQNNEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRIG-VLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G                 +P+       ++ N+   +    V G GI  L
Sbjct: 183 DLHAHDCLPYGHSRQAQWR----FQVQGKPLILNISGRMRANNGELLRDTAVAGLGITYL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV     + +LVR+++D+     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVGAALRDGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFLRQRL 291


>gi|320323097|gb|EFW79186.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329631|gb|EFW85620.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330878093|gb|EGH12242.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 298

 Score =  268 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 142/296 (47%), Gaps = 12/296 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  + W+ L  F  VA  G FT AA++L +S S ISRQI  LE  +  +L YR  R + L
Sbjct: 1   MHINLWEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G         +    E     + + + +P G LR+   +  G+  +   +  F+ LY
Sbjct: 61  TEAGQTFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++ + L N+ +D+  +  D AIRL + +Q S ++  +L    M+  A+P Y++    
Sbjct: 121 PHLRVDIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCASPSYIERYGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+ EL++HN +  G        D   L    R   +      + NS  +++   + G 
Sbjct: 180 PHSLSELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGV 232

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LPDY V+   ++  LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 233 GLCQLPDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKE 288


>gi|86144245|ref|ZP_01062577.1| hypothetical protein MED222_07548 [Vibrio sp. MED222]
 gi|218676327|ref|YP_002395146.1| transcriptional regulators, LysR family [Vibrio splendidus LGP32]
 gi|85837144|gb|EAQ55256.1| hypothetical protein MED222_07548 [Vibrio sp. MED222]
 gi|218324595|emb|CAV26127.1| transcriptional regulators, LysR family [Vibrio splendidus LGP32]
          Length = 298

 Score =  268 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 152/300 (50%), Gaps = 9/300 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R+F   A+  SFT  A +L ++QS++S++I+ LE+++G+ LF R++R ++LT 
Sbjct: 1   MDKIECIRIFVETAQLNSFTATANKLDVTQSAVSKKIAWLESDLGMTLFQRNSRKISLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G       S +  ++ T +  L+  +    G+L+I+        LL   L+ F+  +P 
Sbjct: 61  AGKDYLTYCSRLLEEMSTIESRLKRETESVEGELKISAPSAFSSMLLSEPLQAFIEQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L +D++ ++++    D AIR  + ++ S L  R L    +H +A+P YL+    PL
Sbjct: 121 IRINLSIDDRIVNLNEHNIDVAIRASQ-LKDSGLKARFLFNNKVHYFASPDYLEKQGIPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L +H  +T+  + P    ++ +    D+            +S   +++    G GI
Sbjct: 180 YPQDLSEHQCLTYSLMSPAN--EWRFTDKSDKTNTIKVNQIFTSDSPDMLLKMARQGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARD 296
             LPD++ K+      L R++ED       +Y  Y  +     +++ F +F+  +L AR+
Sbjct: 238 VALPDWMGKEYVEKGELKRLLEDWSNNQLPMYVVYHASDYLPQRIRVFIDFLAKYLSARN 297


>gi|330807804|ref|YP_004352266.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375912|gb|AEA67262.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 298

 Score =  268 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 139/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA    FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TLTE G 
Sbjct: 6   WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIARLEERLQTRLLYRSTRRVTLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMGLYPQLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P YL+    P S+ 
Sbjct: 126 DIELSNRPLDLVHEGLDLAIRLGR-LQDSRLVATRLAPRRMYLCASPSYLERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +           D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELSRHNCLI-------GSSDVWQLEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V ++     L+ ++E    P+  V+  YP+    + K++   +F+  
Sbjct: 238 PDYYVLEHLHSGALISLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDFLKE 288


>gi|307153965|ref|YP_003889349.1| LysR family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306984193|gb|ADN16074.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 7822]
          Length = 304

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 140/292 (47%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ ++ F  V ++G F  AA +++LS+S +++ +  LE E+G++L  R  R +T T 
Sbjct: 1   MDKFESIKAFTQVIKAGGFAAAAREMNLSRSMVNKLVINLENELGVQLLQRTTRQVTPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +  +LE  ++ + +   +P G L+I   +  G   L   + +F+L YPD
Sbjct: 61  TGLAFYERCLSILAELEEAELAVSQLQREPKGILKINAPMSFGTLHLAPAIADFMLQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QL L+++ ID   +  D  +R+ KP Q++ LI   LV +     AAP Y      P 
Sbjct: 121 LQVQLTLEDRFIDPIAEGFDVTVRICKPFQAAGLIVHPLVGVKQVLCAAPSYFDKRGIPK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H+ + +G L          L              L  N+  ++    + G GI
Sbjct: 181 HPKELGEHSCLHYGYLAAGNQWK---LFGPKGECTVNINGVLCSNNGEALCSAALKGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LLP +I+ D     +LV+++ D       VY  YP     + K++ F  F+
Sbjct: 238 VLLPTFIIGDELKTGSLVQVLPDYFGLELFVYVIYPTNRHLSIKIQLFTEFV 289


>gi|296532777|ref|ZP_06895456.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296266885|gb|EFH12831.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 297

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 123/294 (41%), Positives = 181/294 (61%), Gaps = 2/294 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWDKLRVF+ VA +GSFTHA E L+LSQS++SRQI  LE  + + LF+RHARGL LT
Sbjct: 1   MPLDWDKLRVFHAVAEAGSFTHAGESLNLSQSAVSRQIQALEEALAVPLFHRHARGLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L+R   EV+ KL  T+  L ES  + +G+L++ TT   G   L   L++F+ L+ 
Sbjct: 61  EQGETLNRTVREVFAKLAMTEALLTESRERAAGRLKVTTTTGFGTAWLAPRLRKFMGLHS 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L+LD+ D+D++M  AD AIR+  P Q   LIQR + T       +P YLK    P
Sbjct: 121 DVTVTLLLDDADLDLAMREADVAIRMHPPKQ-PDLIQRHVATFGWKIVGSPDYLKGAGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++LD H LI +GD  P  +E  NWL    R  G PR + ++VNS  +++     G G
Sbjct: 180 QRAEDLDAHRLIVYGDYRPP-VESINWLLEAGRRPGSPRRAAVEVNSLPAMLHAVRSGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A LPDY+ +D  +L+ ++ D+ +P    YF YPE ++++ ++  FR+F+  + 
Sbjct: 239 LAALPDYMSEDLRDLIPVLTDLKSPRIDAYFVYPEEMRHSKRVGVFRDFLVSEL 292


>gi|114565210|ref|YP_752724.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114336503|gb|ABI73885.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 288

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 139/289 (48%), Gaps = 11/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA + SFT A ++L +S + +SRQIS LE  +  KLFYR  R ++LTE+
Sbjct: 2   MKWEGIFEFVAVAETDSFTVAGKRLSISTAQVSRQISQLENRLNTKLFYRTTRKVSLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++   +V + L+  +  +     KP G +RI   +  G+  +   + +F+  YPDI
Sbjct: 62  GTVYYQHCRQVLNSLDEAERAISSLKDKPQGLIRITAPVTYGEKFIMPIVIDFMQQYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++   L N+ +D+     D AIRL + + +S+++ ++L +   +  AAP Y+     P +
Sbjct: 122 EVICELTNQQLDLVDGGYDLAIRLGR-LTNSTMMAKRLTSRSQYVCAAPSYIAKYGTPYA 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +HN +          +         +P        L  +S LS++   + G GI 
Sbjct: 181 LSELSQHNCLI-------GSQSHWHFVEQGKPKTVKVHGSLACSSGLSLLNAAICGLGIV 233

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP Y V D      LV ++     P   ++  YP     + K++   +
Sbjct: 234 QLPGYYVNDAIAEGLLVVLLAPFQQPKEGIWALYPHNRHLSPKVRLLVD 282


>gi|257487058|ref|ZP_05641099.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330894617|gb|EGH27278.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330985133|gb|EGH83236.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009304|gb|EGH89360.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 298

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 142/296 (47%), Gaps = 12/296 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  + W+ L  F  VA  G FT AA++L +S S ISRQI  LE  +  +L YR  R + L
Sbjct: 1   MHINRWEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G         +    E     + + + +P G LR+   +  G+  +   +  F+ LY
Sbjct: 61  TEAGQTFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++ + L N+ +D+  +  D AIRL + +Q S ++  +L    M+  A+P Y++    
Sbjct: 121 PHLRVDIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCASPSYIERYGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+ EL++HN +  G        D   L    R   +      + NS  +++   + G 
Sbjct: 180 PHSLSELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGV 232

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LPDY V+   ++  LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 233 GLCQLPDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKE 288


>gi|83951820|ref|ZP_00960552.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
 gi|83836826|gb|EAP76123.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
          Length = 298

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 110/296 (37%), Positives = 174/296 (58%), Gaps = 4/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDLLHLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G+LR+ TT+  G   L   L +    YPD+
Sbjct: 61  GELLFDATRAMMKRLDAATARIRDSEEEVFGELRVTTTVGFGTLWLAPRLPKLFERYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L+L+   +D+ M  AD AIR+++P Q+  LI+++L+++HM  YA   Y++   EP  
Sbjct: 121 NIDLMLEESVLDLPMREADVAIRMKEPSQAD-LIRKRLMSVHMRLYATKAYIEKFGEPKE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L+ H LI      P   +       V + + E   S L VN+Y  ++Q  +   G+ 
Sbjct: 180 MSDLEDHRLIC---QNPSAAQVGAGATLVAQLMAEGVPSKLSVNNYFGVLQGVLHNVGLG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LPDY+  D P LVR++ +V +    V+  YPE L+++ ++ AFR+F+  +   ++
Sbjct: 237 VLPDYLANDFPELVRVIPEVESSEVPVFLAYPEELRHSQRIAAFRDFVQEEIIAYR 292


>gi|149922495|ref|ZP_01910927.1| probable transcriptional regulator [Plesiocystis pacifica SIR-1]
 gi|149816690|gb|EDM76182.1| probable transcriptional regulator [Plesiocystis pacifica SIR-1]
          Length = 301

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 141/296 (47%), Gaps = 7/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L VF      GSF   A  L LS +++S+ +  LE  +G++L +R  R ++LTE
Sbjct: 1   MDRFTALTVFRHAVELGSFAATARHLRLSPAAVSKNVGELEAALGVRLLHRTTRRMSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   + V  +L+  +  L     +  G LR++  + L        +  FL  +P+
Sbjct: 61  AGELYYESVARVLDELDDAEGMLDAMQGETKGSLRVSAPMSLTLTCFASAIPAFLQRHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L LD++ +++  +  D AIR  + ++ SSL+ RK++T+      AP YL+    P 
Sbjct: 121 LSLDLRLDDRRVNLVEEGFDVAIRGTEQLEDSSLVARKVMTLAHVVCGAPDYLERRGTPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  + F          F+      R + +P     QV+S L++ +    G G+
Sbjct: 181 HPKQLREHECVGFSLAAHAREWSFS---KRGRELRQPVRGRYQVSSSLAVREALRAGLGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++P+  V+++     L  ++ +    S TVY  YP       K++AF +F+  + 
Sbjct: 238 GMIPEVYVREDLAAGRLRAVLGEWTPRSATVYAVYPSKRYLVPKVRAFVDFLVAEL 293


>gi|324009114|gb|EGB78333.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
          Length = 304

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 142/294 (48%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISCYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L DY++        LV +M D + P        Y      + +++AF +F+
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFL 289


>gi|83593592|ref|YP_427344.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576506|gb|ABC23057.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 304

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 133/298 (44%), Gaps = 14/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+   V  +GSF+ A   L ++ SS+SRQ+S LE  +G +L  R  R L+LT
Sbjct: 1   MDI-LSGMRLLSRVVEAGSFSEAGRLLGMAPSSVSRQVSALEDTLGTQLLNRTTRRLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E     +      P G L++   +  G   +   L  FL  YP
Sbjct: 60  EAGGLFHDRALRILADVEDATRVVSSLESAPRGTLKLNVPVGFGNYHVAPALPLFLARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L L +  ID+  +  D A+R+   ++ SSL+ R+L       Y +P YL+    P
Sbjct: 120 DLTVDLTLSDHFIDLIEEGVDVAVRIGA-LRDSSLVARRLADNRRMVYGSPDYLRRMGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  +L  H  I +            WL   D   +       L  N+  S+ +  + GS
Sbjct: 179 ETPHDLTAHRCIAYRYRPGPQ----GWLFERDGIRLDITVTGPLTANNSESLHKMILGGS 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
           G+A+LP ++   +     LV ++ D           ++  YPE+   + K++AF +F+
Sbjct: 235 GLAMLPTWMAYSDVKSGLLVPLLGDWTMSPTSLESAIHVVYPESRHLSAKVRAFIDFM 292


>gi|163732608|ref|ZP_02140053.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
 gi|161393968|gb|EDQ18292.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
          Length = 301

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 138/293 (47%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F +V   G FT AA++L +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFAMVVDQGGFTDAAKKLGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L EFL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSEFLSDFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPGYFEKYGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L+ H L+ + +     +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNAHKLLHYSNQSSGNVWKITAPSGEKRQVRT--AGWLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A LP ++  D     LV   + D+   +  +Y  YP       K++AF +F+ 
Sbjct: 238 AYLPSFLYADAMEKGLVEDAIPDLPMETQGIYAVYPPGRFTQPKVRAFIDFLV 290


>gi|114766195|ref|ZP_01445195.1| Transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114541566|gb|EAU44609.1| Transcriptional regulator, LysR family protein [Roseovarius sp.
           HTCC2601]
          Length = 301

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 108/291 (37%), Positives = 175/291 (60%), Gaps = 4/291 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDALHLSQSAVSRQIRSLEESLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+ +  +++     +++S  +  G+L++ TT   G   L   L +    +PD+
Sbjct: 61  GELLFDATASMVKRIDAATARIRDSEEEVFGELKVTTTHGFGVLWLAPRLTKLYEKFPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L++I M  YA+P YL +   P S
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMSIRMRMYASPEYLADRGVPGS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H LI      P   +       V   +     + L VN+Y  ++Q  V   GI 
Sbjct: 180 LDELSQHRLIC---QNPASSQVAAGKLLVQELLTYDIQTALTVNNYFGVLQAVVANLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +LPDYI++D P++VR++ ++ +    V+  YPE L+++ ++ AFR+F+  +
Sbjct: 237 VLPDYIIEDFPSVVRVLPEIESNEVPVFLAYPEELRHSKRVAAFRDFVQEE 287


>gi|167579660|ref|ZP_02372534.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 298

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 4/289 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A +GSF  A   L LS   + + +  LET  G++L  R  R  +LTE G   +
Sbjct: 1   MAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  + +            P G LRI   I  G + L   L  ++  YP++QI L 
Sbjct: 61  ERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  IR+  P+  S LI R L    +   A+P YL     P    +L 
Sbjct: 121 LSDRIVDVVDEGYDAVIRIA-PLADSGLIARPLAPYRLVLCASPAYLAEHGAPAEPADLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F         ++ + +   +       S L VN+  ++    + G GI L P  
Sbjct: 180 AHECLGFSYSGQPAALEWPFESAQGQQHSVRVRSRLAVNNGAALRMAALDGLGIILQPAE 239

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +V+D+     LVR++     P+  ++  Y    + T KL++F + +   
Sbjct: 240 LVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSFIDAVIAA 288


>gi|254466186|ref|ZP_05079597.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206687094|gb|EDZ47576.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 297

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   +
Sbjct: 1   MEAFANVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V +        +      PSG LRI+   D G N L   L +FL  +PDI + ++
Sbjct: 61  DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFPDITVNMV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +++  +  D A+R+ + ++ SSL  RKL        A+P YL+    P  I EL+
Sbjct: 121 LNNRYVELISEGFDMAVRIGE-LEDSSLRARKLTETTKRMIASPAYLEKFGRPQKIDELN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+ +       +      +   R +       L VN   S++   + G GIA LP Y
Sbjct: 180 NHKLLHYSSQSSGNVWKITAPSGEKRQVRT--SGWLSVNDGQSLLTAAISGLGIAYLPSY 237

Query: 248 IVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  +     LV  +M  +   +  +Y  YP       K++AF +F+     D
Sbjct: 238 LYAEAMEEGLVEDVMPSLPVETQGIYAVYPPGKFTQPKVRAFIDFLVAAFAD 289


>gi|83721094|ref|YP_440946.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83654919|gb|ABC38982.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 304

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 126/295 (42%), Gaps = 5/295 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF   A +GSF  A   L LS   + + +  LET  G++L  R  R  +LTE
Sbjct: 1   MDRLTSMAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +  V  + +            P G LRI   I  G + L   L  ++  YP+
Sbjct: 61  AGRAFYERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI L L ++ +D+  +  D  IR+  P+  S LI R L    +   A+P YL     P 
Sbjct: 121 VQIDLTLSDRIVDVVDEGYDAVIRIA-PLADSGLIARPLAPYRLVLCASPAYLAEHGAPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + F         ++ + +   +       S L VN+  ++    + G GI
Sbjct: 180 EPADLAAHECLGFSYSGQPAALEWPFESAQGQQHSVRVRSRLAVNNGAALRMAALDGLGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L P  +V+D+     LVR++     P+  ++  Y    + T KL++F + +   
Sbjct: 240 ILQPAELVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSFIDAVIAA 294


>gi|327191153|gb|EGE58197.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 298

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  V  +GS + A   L  S + +S++I  LE  +G +L  R  R ++LTE G
Sbjct: 3   NLSDLEIFAKVVSTGSMSLAGRMLGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   LE  +  +   S +  G L+++     G+  +  +LK F+  +PD+ 
Sbjct: 63  QGFYDRVLGILAGLEEAEFYISGRSAQMHGTLKVSAPTSFGRMHIAPHLKAFMQAHPDLA 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L ++  DI     D AIR+ + +  SSL+ R+L  +     A+P YL    EP +I
Sbjct: 123 INLVLTDEFSDIIGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLAAHGEPRNI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +      P    D   L   +  +       L  NS   I +  + G GIAL
Sbjct: 182 DDLKHHRCL------PAHNGDTWRLTGPEGALSLRPEGMLITNSSEVIREAVISGLGIAL 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
              + + +      LV+++         T+   YP       K++ F +++  
Sbjct: 236 RSTWDIGEELKAGRLVQVLPAYEGSHNVTLSAVYPSRQFLPAKVRLFIDYLTE 288


>gi|156935278|ref|YP_001439194.1| hypothetical protein ESA_03131 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533532|gb|ABU78358.1| hypothetical protein ESA_03131 [Cronobacter sakazakii ATCC BAA-894]
          Length = 295

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L +F  V  SGSF+ AAEQL+L+ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKASSDELIIFVAVVESGSFSRAAEQLNLANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   +V  ++   + EL ES   P G LRI     +  +LL   +K F   YP
Sbjct: 61  EEGERYFRRVQQVLQEMAAAETELMESRQTPRGLLRIDAATPVILHLLIPMIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    AAP YL+    P
Sbjct: 121 EVALSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIVAAPDYLERYGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I EL+ H  + F + +        W    +          +  NS  ++ Q C+ G+G
Sbjct: 180 KNICELNDHVCLGFTEPVSLN----TWPVACEDGQLLEITPGMTSNSGETLKQLCLTGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA L D+++    +   LV ++ +   P        Y      + +++ F +F+  
Sbjct: 236 IACLSDFMIDKEIEQGKLVELLAEYRLPVEMPFSAVYYSDRAVSTRIRTFIDFLSE 291


>gi|331671738|ref|ZP_08372534.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
 gi|331070727|gb|EGI42086.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
          Length = 304

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFYSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L +H  + F +           +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETLDDLKQHVCLGFTEPASLNTWP---IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|323497147|ref|ZP_08102167.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323317722|gb|EGA70713.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 300

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 147/302 (48%), Gaps = 10/302 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D   +FY +   GSF+ AA+Q+ L++S +S++I+ LE E+G++L YR  R L LTE G
Sbjct: 3   NTDDYIIFYHLVEQGSFSAAAKQMELTKSVVSKRIAKLEKEIGVQLLYRTTRTLKLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    V+  + T +  +       SG ++I      G+ +L   + EF L YPDI 
Sbjct: 63  QSFFEHARRVFQAVATAEESIVGLGKSLSGNIKITVPTISGELILPTVISEFNLQYPDIN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + LDN+  DI  +  D AIR    +  SSLI RKLV  +    A+P YL    +P S 
Sbjct: 123 IDMELDNRFADIINEGFDLAIRTG-VLPDSSLIARKLVDANWVVCASPMYLAKHGKPASP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           + L  HN + +        E   W    +  I + ++   L  N+  ++    +LG G+ 
Sbjct: 182 KALVDHNCLAYAYQETGARE---WAFKSESGIYQVQVDGNLCTNNSSALRNVALLGQGLI 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KARDW 297
            +P  +V ++     L+++ +D       +Y  YP   +   K+K F + ++   ++R  
Sbjct: 239 YVPRVLVYEDLQQGKLIQLFKDETAKCLGIYTVYPYTRQQPEKVKLFIDHLYTCFQSRSH 298

Query: 298 KF 299
           +F
Sbjct: 299 QF 300


>gi|149915358|ref|ZP_01903885.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810647|gb|EDM70488.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           AzwK-3b]
          Length = 295

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   +
Sbjct: 1   MEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V +        +      PSG LRI+   D G N L   L  FL  +PDI + ++
Sbjct: 61  DRALRVLNDAGEADALVSSMQSAPSGLLRISVATDFGVNHLSPVLGGFLEEFPDISVNMV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +++  +  D A+R+ + ++ SSL  RKL        A+P YL+    P  I +L+
Sbjct: 121 LNNRYVELISEGFDMAVRIGE-LEDSSLRARKLTETTKRMIASPAYLQKYGRPAKIDDLN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H L+ +       +      +   R +       L VN   S++   + G GIA LP +
Sbjct: 180 EHRLLHYTSQANGSVWKLTAPSGEKRQVRT--AGGLSVNDGQSLLNAAISGLGIAYLPSF 237

Query: 248 I---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +      +  +  ++ D+   +  +Y  YP       K++AF +F+     D
Sbjct: 238 LYAKAMQDGLVEDVIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFLVHAFAD 289


>gi|152997713|ref|YP_001342548.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150838637|gb|ABR72613.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 304

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 134/300 (44%), Gaps = 7/300 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L +F  VA +GSF  AA+   +S  ++S++IS LE ++G++L +R  R L+LTE 
Sbjct: 1   MNAADLTLFVNVADTGSFNKAAQLAGMSTPALSKRISKLEQDLGVQLIHRTTRRLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +  ++      +   S   +G ++++     G+ LL   + EF   YP+I
Sbjct: 61  GESLYVHAKNIEGQVSDAIASVSAFSQGLTGTIKMSVPTISGELLLAEAIAEFCQKYPNI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + + L+N  +D+  +  D AIR  K ++ SSLI + L+  +     +P Y++   E  +
Sbjct: 121 TVDMRLENDFVDLVGEGLDLAIRTGK-LEDSSLIAKPLIQSNWVVCCSPSYIERHGEVTN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGS 239
           ++ L  HN + +        +       V +   E  +        N+  ++ +  + G 
Sbjct: 180 LEALKDHNCLAYTYQAQGSFDWRFTKQGVGKKTVEESVRISGSFATNNAQALRKAALAGF 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  +P   V ++     LV I+         VY  YP       KL+     I    ++
Sbjct: 240 GIVYVPRCCVYEDLMKGTLVAILPQYKPRQLGVYAIYPFTKYLPEKLRLLIEHIKQAYQE 299


>gi|206559709|ref|YP_002230473.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035750|emb|CAR51641.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 307

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 134/306 (43%), Gaps = 13/306 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W ++  F  VA  GS + AAE+L +S ++ SR ++ LE  +G +L  R  R L LT+
Sbjct: 1   MDKWTQIEFFVQVAELGSLSKAAERLGMSSAAASRCLNALEERLGARLVERTTRRLWLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + HR    + ++L      + E+SV P+G LR+  ++      +   L EF   YP+
Sbjct: 61  AGHEYHRRCVAILNELSEADAAVNEASVIPAGTLRVTASVSFASIYIAPALPEFHRRYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +Q++  N+  D      D AIR R+    S +  RKL        A+P YL     P 
Sbjct: 121 LNVQIVAANRYPDFIEAGIDVAIRTREHEADSGITVRKLAETRRVLAASPGYLAKHGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L  H L+ +       +  F   A   +       S L  N    I    + G GI
Sbjct: 181 TPDALGDHRLLVYNLANDPYVLHFRHGA---KKQSVTIKSVLDANEGQVIRAAALAGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----- 293
            + P YI+ D+     LV ++ D   P+ TV   Y        K++ F  F+  +     
Sbjct: 238 LIQPLYIIHDDIVAGKLVPVLTDWQLPALTVNIAYQSRRHQPAKIRVFTEFLIERFERLG 297

Query: 294 -ARDWK 298
            AR WK
Sbjct: 298 LARKWK 303


>gi|209548056|ref|YP_002279973.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533812|gb|ACI53747.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 298

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  V  +GS + A   L  S + +S++I  LE  +G +L  R  R ++LTE G
Sbjct: 3   NLGDLEIFAKVVSTGSMSLAGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   LE  +  +   S +  G L+I+     G+  +  +LK F+  +P++ 
Sbjct: 63  QGFYDRVLGILAGLEEAEFYISGRSTQMHGTLKISAPTSFGRMHIAPHLKAFMEAHPELA 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L ++  DI     D AIR+ + +  SSL+ R+L  +     A+P YL    EP  I
Sbjct: 123 INLVLTDEFSDIVGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLAEHGEPGDI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +      P    D   L   D  I       L  NS   I +  + G GIAL
Sbjct: 182 DDLKHHRCL------PAHNGDTWRLNGPDGMISLRPEGMLVTNSSEVIREAVISGLGIAL 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
              + + +      LV+++          +   YP       K++ F +++  
Sbjct: 236 RSTWDIGEELKAGKLVQVLPAYEGSHNVALSAVYPSRQFLPAKVRLFIDYLAE 288


>gi|293413463|ref|ZP_06656112.1| HTH-type transcriptional regulator yafC [Escherichia coli B185]
 gi|291433521|gb|EFF06494.1| HTH-type transcriptional regulator yafC [Escherichia coli B185]
          Length = 304

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGQRYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHELKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|84684127|ref|ZP_01012029.1| transcriptional regulator, LysR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667880|gb|EAQ14348.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 301

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 140/302 (46%), Gaps = 15/302 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L +FL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVNTDFGVNHLSPVLGQFLQDFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++L+N+ +++  +  D AIR+ + ++ SSL  RK+         +P+Y +    P+
Sbjct: 121 VNVNMVLNNRYVELISEGFDMAIRVGE-MEDSSLRARKIADTTRRMVGSPNYFQKYGRPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVL 237
            I +L++H L+ +       +        V  P GE R       L VN   S++   + 
Sbjct: 180 RIDDLNEHKLLHYSSQSSGNVW------KVPAPSGEVRQVRTAGWLSVNDGQSLLNAAIA 233

Query: 238 GSGIALLPDYIVKDNPN--LVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GIA LP ++  D     LV   + ++      +Y  YP       K++AF +F+    
Sbjct: 234 GLGIAYLPSFLYADALEQGLVEDAIPELPMDVQGIYAVYPPGRFTQPKVRAFIDFLVAAF 293

Query: 295 RD 296
            D
Sbjct: 294 ND 295


>gi|78049384|ref|YP_365559.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037814|emb|CAJ25559.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 298

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 133/292 (45%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D +RVF  VA    F+ AA+ L  S +S++RQI+ LE  +G +L  R  R ++LT  G
Sbjct: 3   TLDAMRVFAAVAERSGFSAAADALDRSTASVTRQIAALEQRLGTRLLNRTTRRVSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S  ++   ++   L+  +  +   +++P+G LR+   +  G   L   L  F   YP ++
Sbjct: 63  SAYYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+  +  D AIR+ +   +  LI R+L  + + A A+P YL     P   
Sbjct: 123 LDLSLSDRLVDMVEEGFDVAIRITRQ-PAPMLIARQLGKVRILACASPAYLARAGTPRHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +         D       +  I       L+ N+   +    + G GI +
Sbjct: 182 SDLAGHECLLYHYSPSG---DEVRFQGPEGDIDVRLRGGLRANNGHVLNAAALAGQGIVM 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            PD++ + +     LVRI+ D       ++  Y        K+++F +++  
Sbjct: 239 QPDFLAEPHLAAGRLVRILPDYALDEIGIFAVYTSRSHLAPKVRSFIDYLIE 290


>gi|114320559|ref|YP_742242.1| LysR family transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226953|gb|ABI56752.1| transcriptional regulator, LysR family [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 305

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 140/293 (47%), Gaps = 7/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V  +GSF  A+E+L  + S+ SRQ+S LE  +  +LF R  R LTLTEQG   
Sbjct: 6   AMEAFVAVVEAGSFVAASERLGRATSTTSRQVSELEAHLQARLFQRTTRRLTLTEQGQVF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R   ++  +LE  + E+   + +P+G LR+   +  G   L G + +F   +P + + L
Sbjct: 66  YRHCKDLLARLEEAEAEVGAGTGEPNGVLRVTAPVSFGTLHLAGLIPQFHARHPRVHLNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D A+R+ + +    L+ RKL ++ +   AAP YL     P   + L
Sbjct: 126 SLDDRQVDLMGEGHDLALRISRSLP-EHLVARKLASVSIITCAAPGYLAQAGRPERPEAL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + +    P     +        PI       L  N+   +    + G GIA LP 
Sbjct: 185 QAHTCLLYSQAEPYRTWTYQ---GPQGPIPVRVGGYLTANNGDVLRAAALAGDGIAQLPA 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++V+D+     LV ++ D   P   VY  YP       K++AF +F+    RD
Sbjct: 242 FLVRDDLSAGRLVPLLPDYPLPPLGVYAVYPSRRYLPAKVRAFVDFLAETWRD 294


>gi|117920283|ref|YP_869475.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117612615|gb|ABK48069.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 293

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA   +FT AA +L++S + +SRQI  LE  +G KLFYR  R ++LTE+G+
Sbjct: 4   WDGISEFVAVAEVENFTLAALRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   LE  +  + +    P G +++   +  G+  +   L +F++ YP ++ 
Sbjct: 64  IYYRHCRQLQTGLEEAERAITDLKGSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+     D AIRL K +  SSL+ + L +   +  A+P Y++   EP ++ 
Sbjct: 124 NVDLTNRTLDLIEGGYDLAIRLGK-LADSSLMAKPLSSRTHYVAASPSYVEKYGEPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +       + +E+        R         L  NS  ++    + G GI  L
Sbjct: 183 ELNQHNCLIGNHNYWRFIEN-------GRERNIKVRGNLICNSGYALRDAALKGIGIVQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PDY ++++     L+  ++        ++  YP+    + K++   +++  K 
Sbjct: 236 PDYYIEEDIHAGRLISFLDAHREAKEGIWALYPQNRHLSAKVRVLVDYLAEKL 288


>gi|91226712|ref|ZP_01261401.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91189009|gb|EAS75292.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 290

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 146/296 (49%), Gaps = 11/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++L+E G
Sbjct: 3   NWEGVSEFVAVAETNSFTAAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G LR+   +  G+  L   L +FL  YP + 
Sbjct: 63  QLYYQQCKHLVEGLELAELAITQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L N+ +D+     D AIRL + +Q SS+I ++L +   +  A+P YL+   EP ++
Sbjct: 123 LDLVLTNQKLDLIEQGVDVAIRLGR-LQDSSMIAKRLSSRQNYVCASPMYLERFGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H  +           D+       R         ++ NS  ++M     G G+  
Sbjct: 182 SELARHQCLV-------GSVDYWHFKENKRDKSLRVSGRIKCNSGFALMGAAKRGLGLVQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LPDY V+   DN  LV ++ D       ++  YP++   + K++   +F+  +  D
Sbjct: 235 LPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFLAQELAD 290


>gi|148975168|ref|ZP_01812092.1| putative transcriptional regulator [Vibrionales bacterium SWAT-3]
 gi|145965092|gb|EDK30342.1| putative transcriptional regulator [Vibrionales bacterium SWAT-3]
          Length = 289

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 145/294 (49%), Gaps = 11/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA   SFT AA++L  S + ISR+++ LE  + +KL  R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAERESFTGAAQKLATSVAQISRRVANLEERLAVKLLNRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P G L++   +  G+  L   L +FL L+P ++
Sbjct: 63  QLYYQQCKLLVEGLEIAELAVTQMQSTPKGLLKVTAPVTYGERQLAPILHQFLKLHPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L N+ +D+     D AIRL + ++ SSL+ +KL    ++  A+P Y++N  EP ++
Sbjct: 123 LELMLTNQKLDLIDSGVDVAIRLGR-LEDSSLVAKKLSQRQLYVCASPEYIENYGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +          E +       RP        ++ NS L+++       G+  
Sbjct: 182 SELTNHQCLV------GGFEHWR-FKENGRPRSVRVNGRIKCNSGLALLDAAKQSIGLVQ 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP+Y V ++     LV ++ D       ++  YP+    + K++   +F+  + 
Sbjct: 235 LPEYYVSEDLDSGELVEVLSDYRDDKEGIWALYPQNRNLSSKVRLLVDFLSEQL 288


>gi|307727271|ref|YP_003910484.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587796|gb|ADN61193.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 334

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 143/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q  + KP GKLRI     +G+ L+   L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPKLCEFHQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y++    P 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVVRVGA-LQDSSLVARRIGLFEGVTCAAPSYIERAGMPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S+++L+ H  + +     +     +W   VD    E ++ S + VN   + +   + G G
Sbjct: 180 SLEDLENHKAVNY--FSSRTGRTLDWAFMVDGKEVEVKMKSIVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     +  LV ++ ++      +   YP +   + K++ F ++I  
Sbjct: 238 LIQPALFMVLPQLRSGQLVEVLPELKPLPMPISAVYPHSRHLSPKVRVFVDWIAE 292


>gi|82775594|ref|YP_401941.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|309787118|ref|ZP_07681730.1| uncharacterized HTH-type transcriptional regulator yafC [Shigella
           dysenteriae 1617]
 gi|81239742|gb|ABB60452.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|308924696|gb|EFP70191.1| uncharacterized HTH-type transcriptional regulator yafC [Shigella
           dysenteriae 1617]
          Length = 304

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 144/299 (48%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P+Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPNYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMINREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|194432707|ref|ZP_03064992.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|194418969|gb|EDX35053.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|332097559|gb|EGJ02538.1| hypothetical protein SD15574_0666 [Shigella dysenteriae 155-74]
          Length = 304

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AI     +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIHAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|56476178|ref|YP_157767.1| LysR family transcriptional regulator [Aromatoleum aromaticum EbN1]
 gi|56312221|emb|CAI06866.1| putative transcription regulator protein, lysR family [Aromatoleum
           aromaticum EbN1]
          Length = 304

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 140/293 (47%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V  +GSF+ AA +L +S+S++S+ ++ LE   G +L  R  R L+LTE G
Sbjct: 3   DLNLMATFARVVEAGSFSEAARRLDVSRSAVSKAVAKLEKAFGARLLNRSTRALSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +    + +  + E  +  +     +P G L+++ ++  G   +   L +FL  YP++ 
Sbjct: 63  AAVAEHCARIVDEAEQAEQVVMSFHAEPRGILKVSASVAFGTLHVAPALADFLGRYPELA 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +++ +K +D++ +  D A+R+       SL+ R+L  +     A P Y +    P + 
Sbjct: 123 LDMMITDKLVDLAEEGYDLAVRVTGE-PPGSLVARRLAPVRRRICATPEYFRRRGVPQTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ +++     K    F+     +  I  P    L ++   ++ Q  + G G+AL
Sbjct: 182 EDLVHHHCLSYAHSGEKGQWRFS---GPEGEIAVPVKGPLHIDDDEALSQAVLSGLGVAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP +IV  +     L  ++ + +     VY  Y        K++A  +F   +
Sbjct: 239 LPTFIVGGDLQQGRLQAVLSEYLPVQQHVYALYLPTRHLPAKVRALIDFFVAR 291


>gi|88800479|ref|ZP_01116043.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
 gi|88776809|gb|EAR08020.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
          Length = 301

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/290 (28%), Positives = 143/290 (49%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  V ++ +FT+AA QL L+ S++S+QIS LE  +G++L  R  R ++ TE G 
Sbjct: 4   LDSLIIFTTVVKANNFTNAAHQLGLTPSAVSKQISLLEDRLGVRLLNRTTRSVSPTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 S +   LE  +  +++    P G L+I+ T   G+ +L     +FL  YPD+  
Sbjct: 64  LFFNRCSRLLEDLEEAEHMVKDLETSPRGTLKISATPTFGRAMLMKIFAQFLEQYPDVNF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +K +D+  +  D AI L   +Q S L+ R +    +    +  YL    +P ++ 
Sbjct: 124 DLTLADKGLDLVREGIDLAIHLGS-LQDSRLVARPVARQKVILVGSKEYLAEHGQPEALN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H ++    +      +  W+    +  G   +     VN   ++ +  + G G+A 
Sbjct: 183 ELVNHFILMVSGI---DFAEPRWIKRFIKEAGLSNKDRRFTVNDLDTLCEAALNGMGLAA 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y+++   D+  LV I+ D+  P  T++  YPE    + K +AF +F+
Sbjct: 240 LPVYMIREHLDSGKLVHILPDIHFPVRTIHVVYPENRYLSAKSRAFVDFM 289


>gi|163744910|ref|ZP_02152270.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161381728|gb|EDQ06137.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 301

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L EFL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPALSEFLSDFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPKYFEQYGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L+ H L+ + +     +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNNHKLLHYSNQSSGNVWKLTAPSGEKRQVRT--AGWLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP ++  D     LV   + ++   +  +Y  YP       K++AF +F+  +  +
Sbjct: 238 AYLPSFLYADAMEKGLVEDAIPELPLETQGIYAVYPPGRFTQPKVRAFIDFLVHEFAE 295


>gi|134292298|ref|YP_001116034.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135455|gb|ABO56569.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 334

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 145/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTSSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQNNNRKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++      + AAP YL    EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLFECVSVAAPAYLDKYGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           SI++L +H  + +     +     +W    D    E +++ +  VN   + +   + G G
Sbjct: 180 SIEDLAEHKAVNY--FSSRTGRTIDWTFLTDGKEVEVKMNAIVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V     +  L  ++  +      +   YP +   + K++ F ++I  
Sbjct: 238 LIQPPLFMVLPHLRDGRLKEVLPGLKPLPMPISVVYPHSRHLSPKVRVFVDWIAE 292


>gi|332341536|gb|AEE54870.1| transcriptional regulator YafC [Escherichia coli UMNK88]
          Length = 304

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIR-ASTLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +           +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLGFTEAASLNTWP---IARSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|163737129|ref|ZP_02144547.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|163740458|ref|ZP_02147852.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161386316|gb|EDQ10691.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161389733|gb|EDQ14084.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 308

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 140/299 (46%), Gaps = 7/299 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ T
Sbjct: 7   AMDRLTEMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     V +        +      PSG LRI+   D G N L   L +FL  +P
Sbjct: 67  EIGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLRDFP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + ++L+N+ +++  +  D A+R+ + ++ SSL  RKL        A+P YL+    P
Sbjct: 127 DITVNMVLNNRYVELISEGFDMALRIGE-LEDSSLRARKLTETTKRMIASPAYLEKFGRP 185

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I +L+ H L+ + +     M      +   R +       L VN   S++   + G G
Sbjct: 186 QKIDDLNMHKLLHYSNQSSGSMWKITAPSGEKRQVRT--SGWLSVNDGQSLLNAAISGLG 243

Query: 241 IALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA LP Y+  D     LV  +M  +   +  +Y  YP       K++AF +F+     D
Sbjct: 244 IAYLPSYLYSDAMAEGLVEDVMPSLPMETQGIYAVYPPGRFTQPKVRAFIDFLANAFAD 302


>gi|148258402|ref|YP_001242987.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410575|gb|ABQ39081.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 297

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  V  SGSF  A  QL LS+S+IS+ I  LE  +G++L  R  R  + TE
Sbjct: 1   MDKLSSLRAFVKVVESGSFAEAGRQLRLSRSAISKYIGELEASLGVQLIVRTTRHASPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +L+     + +S   P G LR+   +  G   L   + EF+L YP+
Sbjct: 61  AGQLYFERAVVILAELDAADQAVSQSQAAPRGLLRVNAPMSFGTMRLGPVVAEFMLRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+Q++L +  +D   D  D  +R+ + ++SSSL+ RK++ +     AAP YL     P 
Sbjct: 121 LQLQIVLSDDLLDPVQDGFDVTLRIAE-LESSSLVARKIMPVERVICAAPAYLAQHGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L +H  +T+G L+         L   D          L VN+   +    + G GI
Sbjct: 180 SPEQLRRHTSLTYGFLLTGNQWK---LTGPDGDHWIQPAWSLCVNNAEVLRDVAIKGQGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           AL+P +I  D   +  L  I+ D   P   +Y  YP     + K++ F +F+  +
Sbjct: 237 ALIPRFIAADALESGALTAILADYTAPPLALYAIYPPTRHLSVKVRLFIDFLVER 291


>gi|78065958|ref|YP_368727.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966703|gb|ABB08083.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 307

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 133/306 (43%), Gaps = 13/306 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W ++  F  VA  GS + AAE+L +S ++ SR ++ LE  +G +L  R  R L LT+
Sbjct: 1   MDKWTQIEFFVQVAELGSLSKAAERLGMSSAAASRCLNALEERLGARLVERTTRRLWLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + HR    +  +L      + E+SV P+G LR+  ++      +   L EF   YP+
Sbjct: 61  AGHEYHRRCVAILMELSEADAAVNETSVNPAGTLRVTASVSFASIYIAPALPEFHRRYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +Q++  N+  D      D AIR R+    S +  RKL        A+P YL     P 
Sbjct: 121 LNVQIVAANRYPDFIEAGIDVAIRTREHEADSGITVRKLAETRRVLAASPGYLAKHGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L  H L+ +       +  F   A   +       S L  N    I    + G GI
Sbjct: 181 TPDALCDHRLLVYNLANDPYVLHFRHGA---KKQSVTIKSVLDANEGQVIRAAALAGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----- 293
            + P YI+ D+     LV ++ D   P+ TV   Y        K++ F  F+  +     
Sbjct: 238 LIQPLYIIHDDIVAGKLVPVLTDWQLPALTVNIAYQSRRHQPAKIRVFTEFLIERFERLG 297

Query: 294 -ARDWK 298
            AR WK
Sbjct: 298 LARKWK 303


>gi|237728837|ref|ZP_04559318.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226909459|gb|EEH95377.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 299

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+ L L + S+SRQI  LE  +G +L +R  R + LT+
Sbjct: 1   MDKIHAMQLFIRVAELESFSRAADTLGLPKGSVSRQIQALENHLGTQLLHRTTRRVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+             SGKLR+   + + +NL+   L  FL  YP 
Sbjct: 61  DGMIYYERAKDLLSNLDELDGLFHHDPSSISGKLRVDMPVGVARNLVMPRLPSFLHQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L   ++ +D+  +  DC +R+   ++ S LI R L  +     A+P YL     P 
Sbjct: 121 LELELSSSDRLVDLIREGFDCVVRVG-TLKDSGLIARPLGKLTQINCASPQYLARFGYPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++++L  H ++ +   +    + F  +AT +          L VNS  +    C+ G GI
Sbjct: 180 NLEDLASHAVVHYSVNLGTRAQGFE-VATENGTQWVKTGGMLTVNSTETYHAACLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V+D      LV ++         V   YP     + ++  F  ++    +D+
Sbjct: 239 IQVPRVGVRDALRAGTLVEVLPQYRAEPMPVSLLYPHRRNLSRRVHLFMEWLTGVMKDY 297


>gi|167617739|ref|ZP_02386370.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257140399|ref|ZP_05588661.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 298

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 4/289 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A +GSF  A   L LS   + + +  LET  G++L  R  R  +LTE G   +
Sbjct: 1   MAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  + +            P G LRI   I  G + L   L  ++  YP++QI L 
Sbjct: 61  ERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  IR+  P+  S LI R L    +   A+P YL     P    +L 
Sbjct: 121 LSDRIVDVVDEGYDAVIRIA-PLADSGLIARPLAPYRLVLCASPAYLAEHGAPAEPADLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F         ++ + +   +       S L VN+  ++    + G GI L P  
Sbjct: 180 AHECLGFSYSGQPAALEWPFESAQGQQHSVRVRSRLAVNNGAALRMAALDGLGIILQPAE 239

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +V+D+     LVR++     P+  ++  Y    + T KL++F + +   
Sbjct: 240 LVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSFIDAVIAA 288


>gi|294625710|ref|ZP_06704331.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294666297|ref|ZP_06731547.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292600014|gb|EFF44130.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292603948|gb|EFF47349.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 298

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  VA    F+ AA+ L  S +S++RQ++ LE  +G +L  R  R ++LT 
Sbjct: 1   MDTLDAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  ++   ++   L+  +  +   +++P+G LR+   +  G   L   L  F   YP 
Sbjct: 61  AGSAYYQRCLQLLADLDDLEATIGAQALEPAGMLRVNAPVSYGIERLGALLPGFRARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  D AIR+ +   +  LI R+L  + + A A+P YL     P 
Sbjct: 121 VELDLSLSDRLVDMVEEGFDVAIRITRQ-PAPMLIARQLGKVRILACASPAYLARAGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +         D       D  I       L+ N+   +    + G GI
Sbjct: 180 HPSDLAGHECLLYHYSPNG---DDARFQGPDGDIDVRLHGGLRANNGHVLNAAALAGQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + PD++ + +     LVRI+ +       ++  Y        K+++F +++  
Sbjct: 237 VMQPDFLAEPHIAAGRLVRILPEYALGEIGIFAVYTSRSHLAPKVRSFIDYLVE 290


>gi|289626011|ref|ZP_06458965.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651472|ref|ZP_06482815.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868565|gb|EGH03274.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 298

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 142/296 (47%), Gaps = 12/296 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  + W+ L  F  VA  G FT AA++L +S S ISRQI  LE  +  +L YR  R + L
Sbjct: 1   MHINLWEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G         +    E     + + + +P G LR+   +  G+  +   +  F+ LY
Sbjct: 61  TEAGQTFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++ + L N+ +D+  +  D AIRL + +Q S ++  +L    M+  AAP Y++    
Sbjct: 121 PHLRVDIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCAAPSYIERYGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+ EL++HN +  G        D   L    R   +      + NS  +++   + G 
Sbjct: 180 PHSLSELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGV 232

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LPDY V+   ++  LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 233 GLCQLPDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKE 288


>gi|182679730|ref|YP_001833876.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635613|gb|ACB96387.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 316

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 147/292 (50%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D LR+F  V  S SFT AAE L + +SS+S  +  LET VG +L +R  R +  T+
Sbjct: 1   MDRIDLLRIFVRVVESASFTKAAETLGMPRSSVSTAVHDLETRVGARLLHRTTRHVAPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +    E T+   ++SS +P GKLRI      G+ ++   L  F  LYP+
Sbjct: 61  DGNAFFARCQRLIADYEETEGLFRQSSPRPRGKLRINVPGRFGRLIIAPALPGFFALYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L + ++ +D+  D  DCAIR+  P+  SSL+ RK+  + +   A+P YL     P 
Sbjct: 121 VEIELGVTDRTVDLVQDGVDCAIRVG-PLMDSSLVARKIGDLVLINCASPRYLAAHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I+EL +H  + +       ++++ W+    +    P  S + VN+  +++  C+ G G+
Sbjct: 180 NIEELRRHLAVNYLSPASGRIDEWEWVEN-GKIHSLPLPSQVTVNNADAMIACCLAGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V        LV +M D   P   +   YP     + +L+ F  ++
Sbjct: 239 IQIPAYDVAVHLATGELVEVMPDHCAPPLPMTILYPHRHHVSRRLQVFIEWV 290


>gi|325926409|ref|ZP_08187734.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|325543198|gb|EGD14636.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 298

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 133/292 (45%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D +RVF  VA    F+ AA+ L  S +S++RQ++ LE  +G +L  R  R ++LT  G
Sbjct: 3   TLDAMRVFAAVAERNGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S  ++   ++   L+  +  +   +++P+G LR+   +  G   L   L  F   YP ++
Sbjct: 63  SAYYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+  +  D AIR+ +   +  LI R+L  + + A A+P YL     P   
Sbjct: 123 LDLSLSDRLVDMVEEGFDVAIRITRQ-PAPMLIARQLGKVRILACASPAYLARAGTPRHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +         D       +  I       L+ N+   +    + G GI +
Sbjct: 182 SDLAGHECLLYHYSPSG---DEVRFQGPEGDIDVRLRGGLRANNGHVLNAAALAGQGIVM 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            PD++ + +     LVRI+ D       ++  Y        K+++F +++  
Sbjct: 239 QPDFLAEPHLAAGRLVRILPDYALDEIGIFAVYTSRSHLAPKVRSFIDYLIE 290


>gi|302187921|ref|ZP_07264594.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 298

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 139/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA++L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ +YP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N  +D+  +  D AIRL + +Q S L+  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V+   ++  LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKE 288


>gi|218516764|ref|ZP_03513604.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 297

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 127/293 (43%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  V  +GS + A   L  S + +S++I  LE  +G +L  R  R ++LTE G
Sbjct: 2   NLGDLEIFAKVVSTGSMSLAGRMLGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAG 61

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   LE  +  +   S +  G L+++     G+  +  +LK F+  +PD+ 
Sbjct: 62  QGFYDRVLGILAGLEEAEFYISGRSAQMHGTLKVSAPTSFGRMHIAPHLKAFMQAHPDLA 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L ++  DI     D AIR+ + +  SSL+ R+L  +     A+P YL    EP  I
Sbjct: 122 INLVLTDEFSDIIGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLAAHGEPRDI 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +      P    D   L   +  +       L  NS   I +  + G GIAL
Sbjct: 181 DDLKHHRCL------PAHNGDAWRLTGPEGALSLRPEGMLITNSSEVIREAVISGLGIAL 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
              + + +      LV+++         T+   YP       K++ F +++  
Sbjct: 235 RSTWDIGEELKAGRLVQVLPAYEGSHNVTLSAVYPSRQFLPAKVRLFIDYLTE 287


>gi|224826216|ref|ZP_03699318.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224601317|gb|EEG07498.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 293

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 130/289 (44%), Gaps = 8/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AAE   LSQ  + + I  LE  +G +L  R  R   LTE G + +
Sbjct: 7   MEVFVAVVERGSFTAAAEAFGLSQPMVGKHIRALEQRLGARLLARTTRRQHLTEIGEQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  ++   +I  +     P G L+I   +  G   L   L EF++ YP++ ++L 
Sbjct: 67  QRCRHILAEIRDAEIGAERLHQAPRGMLKINAPVTFGSLRLAPALGEFMVQYPEVSVELA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  IR+   ++ S L+ R L    M   AAP YL+    P +  EL 
Sbjct: 127 LSDQVVDLVEEGCDALIRIGTLVE-SGLVARPLAPYRMMVCAAPAYLQRWGTPRTPGELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +          +   W         +P  +  Q N+  ++    + G GI + P+ 
Sbjct: 186 GHQWLGHS----LWEKHAGWRLPTGADAVDPPAARFQSNNGQALRMVALQGGGIVMQPEV 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ ++     LV I+ D +  S  ++  Y    +   KL+AF +F+  +
Sbjct: 242 LLAEDVAAGRLVEILADYLPSSKPMHVLYLPDRQQVPKLRAFIDFVLQR 290


>gi|330980343|gb|EGH78462.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 302

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 141/293 (48%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGS T A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEARLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  +  +   + +P G LR++  +      L   L  FL  Y ++ +
Sbjct: 64  SYYESALRLLAELEQVEQGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYREVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDVVLRIG-VLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G                ++P+       ++ N+   + +  + G GI  L
Sbjct: 183 DLHTHDCLPYGHSRQAQWR----FQGQEKPLTLNVSGRMRANNGELLRESAIAGLGITYL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV       +LVR+++D+     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVSAALREGSLVRVLDDLRPEPLTLSAVYPQHRQASRPVQAFIEFLRERL 291


>gi|261340917|ref|ZP_05968775.1| contact-regulated protein A [Enterobacter cancerogenus ATCC 35316]
 gi|288316774|gb|EFC55712.1| contact-regulated protein A [Enterobacter cancerogenus ATCC 35316]
          Length = 301

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S+ISR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELTIFVAVVESGSFSRAAEQLGQANSAISRSVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSVLQEMAAAETEIIESRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAGN-LTDSSLRARPLFTSYRKIIASPQYIAQFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L +H  + F + +        W               L  NS  ++ Q C+ G+G
Sbjct: 180 ETVEDLRQHTCLGFTEPLSLN----TWPVACHDGQLYEVSCGLSSNSGETLKQLCLEGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D   P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|300694133|ref|YP_003750106.1| transcription regulator protein, lysr family [Ralstonia
           solanacearum PSI07]
 gi|299076170|emb|CBJ35483.1| putative transcription regulator protein, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 314

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 143/293 (48%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T 
Sbjct: 1   MDRLQAMQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   LE T+    +S+    G LRI     +G+ LL   +++F   YPD
Sbjct: 61  DGAAYYERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+++ + ++ +D+  +  DCA+R+ + +Q S+L+ R++  + M   A+P YL     P 
Sbjct: 121 LQLEIGMSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGRLSMVNCASPDYLARYGTPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           ++++L  H  I      P+     +W   +D      ++  L  VN   S M   + G G
Sbjct: 180 TLEDLQDH--IAVNYFSPRNGRRMDWDFVIDGQKQIHKVRSLVSVNDAESAMACALHGLG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     ++  ++     LV ++ D I+    V   YP     + K++ F +++
Sbjct: 238 LLQTARFLAYEHLLSGQLVEVLPDYISEPLPVSVIYPHNRHLSPKVRVFVDWV 290


>gi|157147196|ref|YP_001454515.1| hypothetical protein CKO_02975 [Citrobacter koseri ATCC BAA-895]
 gi|157084401|gb|ABV14079.1| hypothetical protein CKO_02975 [Citrobacter koseri ATCC BAA-895]
          Length = 304

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 135/294 (45%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELVIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +   +   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQDMAAAETEVMETRSTPRGLLRIDAATPVILHFLMPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIARFGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I+EL +H  + F +          W             S L  NS  ++ Q C+ G+G
Sbjct: 180 ETIEELKQHLCLGFTEPASLN----TWPVACSDGQLHEISSGLSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L DY++        LV +M D   P        Y      + +++AF +F+
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFL 289


>gi|89069953|ref|ZP_01157286.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89044507|gb|EAR50635.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 295

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   +
Sbjct: 1   MEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V +        +      PSG LRI+   D G N L   L +FL  +P+I + ++
Sbjct: 61  DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLQEFPEITVNMV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +++  +  D A+R+ + ++ S+L  RKL        AAP Y +    P  I +L+
Sbjct: 121 LNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTDTTKRMIAAPSYFEEYGRPERIDDLN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H L+ + +     +      +   R +       L VN   S++  C+ G GIA LP +
Sbjct: 180 EHKLLHYSNQSNGSVWKLTAPSGEKRQVRT--AGWLTVNDGQSLLNACISGLGIAYLPSF 237

Query: 248 IVKDNPN--LVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  D     LV + + D+   +  +Y  YP       K++AF +F+ 
Sbjct: 238 LYADALAKGLVEVAIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFLV 284


>gi|330820420|ref|YP_004349282.1| transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327372415|gb|AEA63770.1| transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 296

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F   A + SF  A  +L +S S++ + I+ LE  +G++LF+R  R +TLTE+G
Sbjct: 3   NLNGIVAFVRTAETLSFVAAGRKLGISASAVGKTIARLERSLGVRLFHRTTRRVTLTEEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H     +  +L   +  L  S+  P G+LR++  + +G   L   L  F   YPDI+
Sbjct: 63  RHFHERCHRILEELRDAEATLSASAQTPRGRLRVSLPV-IGYRFLLPVLPAFSARYPDIE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ +D+     D  IR  + +  SSL+ R+L        A+P YL     P  +
Sbjct: 122 LDLDFNDRLVDVVEGGFDAVIRSGQ-LSDSSLMSRRLGPFRFVLCASPDYLARAGVPRGL 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  H  + +       ++ ++ L     P   P + C +  N+  ++    + G GI 
Sbjct: 181 ADLAAHEGVRYRFPTTGKLQPWSLLPDGGEP---PNLRCAMTCNNMEALRGAVIAGFGIG 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +PD++ +D     +LV ++E            +P + + + KL+ F +F+  
Sbjct: 238 FMPDFLARDALAAGSLVEVLEPHSIVPGQFSILWPSSRQLSPKLRVFVDFMCE 290


>gi|59714292|ref|YP_207068.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59482540|gb|AAW88179.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 300

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/302 (27%), Positives = 140/302 (46%), Gaps = 8/302 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+F+   +D + +F  V  SGSFT AA     S S IS++I  LE  +G++L +R  R L
Sbjct: 1   MAFNSALFDGMVIFSEVVTSGSFTQAALNSGHSTSYISKEIGKLEERLGVRLLHRTTRTL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT +G    +   ++    +  +  +     KP G+L+++  +    + L+  L +F  
Sbjct: 61  RLTPEGELYFQQCQQLIEDAQMAENSITGQQEKPKGRLKVSCPVGFALSRLRPILGKFTD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYPDI ++L L++K IDI  +  D AIR    ++ SSLI R+ +       A+P YLK  
Sbjct: 121 LYPDIILELDLNDKKIDIVAEGFDMAIRASHQLEDSSLISRRFLRSKAITIASPGYLKKH 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             PL   +L  H  I +  +    + DF       +P      S +  N+    +  C+ 
Sbjct: 181 GAPLYPHDLSSHKTIGYAYVKQGAIWDF--FDKNKQPFSVQLNSQVITNNSFMALSLCLA 238

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             GI  +P + + D      LV +  D    +  ++  YP     + K++ F +FI    
Sbjct: 239 EQGITRIPHFHLTDELETGKLVELFADYPKLTIDIFMVYPSRKHMSAKVRCFMDFISEHL 298

Query: 295 RD 296
            D
Sbjct: 299 GD 300


>gi|313500217|gb|ADR61583.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 298

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W+ +  F  VA SG FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TL+
Sbjct: 1   MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEDRLQTRLLYRSTRRVTLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP
Sbjct: 61  EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + L N  +D+  +  D AIRL + +  S L+  +L    M+  A+P YL+    P
Sbjct: 121 QLRVDVELSNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLERYGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL +HN +           D   L    R I +      + NS  +++   + G G
Sbjct: 180 HSLSELARHNCLV-------GSSDLWALQQDGREISQRVQGNWRCNSGQAVLDAALQGIG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           +  LPDY V ++    +LV ++E    P+  V+  YP+    + K++   +++       
Sbjct: 233 LCQLPDYYVLEHLNSGSLVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYLKEGLAGL 292

Query: 295 RDWKF 299
            +++F
Sbjct: 293 PEYRF 297


>gi|298488354|ref|ZP_07006386.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157176|gb|EFH98264.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 298

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 142/296 (47%), Gaps = 12/296 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  + W+ L  F  VA  G FT AA++L +S S ISRQI  LE  +  +L YR  R + L
Sbjct: 1   MHINRWEGLDEFVAVAECGQFTAAAQRLGVSSSHISRQIVRLEERLQTRLLYRSTRKVAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G         +    E     + + + +P G LR+   +  G+  +   +  F+ LY
Sbjct: 61  TEAGQTFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++ + L N+ +D+  +  D AIRL + +Q S ++  +L    M+  AAP Y++    
Sbjct: 121 PHLRVDIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCAAPSYIERYGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+ EL++HN +  G        D   L    R   +      + NS  +++   + G 
Sbjct: 180 PHSLSELNRHNCLVGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGV 232

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LPDY V+   ++  LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 233 GLCQLPDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKE 288


>gi|167564938|ref|ZP_02357854.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167572144|ref|ZP_02365018.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 334

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 143/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLR+     +G+ ++  +L EF   +PD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQTNNRKPHGKLRVDMPGSIGRLIVIPSLCEFHSRFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL    EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGIDCVIRVGA-LQDSSLVARRVGLFEGTTVASPAYLDKYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           +I+ L +H  + +     +     +W   +D    E +++ L  VN   + +   + G G
Sbjct: 180 TIEALAQHKAVNY--FSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGIEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V     +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 238 LIQPPLFMVLPQLRDGTLKEVLPGYKPLPMPISVVYPHSRHLSPKVRVFVDWIAE 292


>gi|117620686|ref|YP_856142.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562093|gb|ABK39041.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 300

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 135/291 (46%), Gaps = 11/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V    SFT AA QL +S +  S+ +  LE  +  +L  R  R +  TE G   
Sbjct: 6   AMRTFIKVVECQSFTKAANQLGISVAMTSKLMQQLEESLSTRLLSRTTRQVNPTEAGQFY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++ +  +  +LE T  +L  ++ +P G L+++  +D G   L   L  F   YPD+++++
Sbjct: 66  YQRSQALLAELEETHSQLTRNNQQPQGTLKLSVPMDFGYLHLSPALPLFRERYPDLKLEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ + +  +  D A+R+   +  SSL+ + L  + +   A+P YL     P + ++L
Sbjct: 126 EYSDRRVALVEEGFDLALRIGN-LPDSSLVAKPLAMMRLEVCASPAYLARRGTPNTPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ + +    P      +W+   D      R    L+ N+ +++ +      GI L P
Sbjct: 185 KQHDCLLYTLTQP------DWVFKRDGEQLSVRPQGPLRANNGVALTRAACDHQGIILQP 238

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +IV D   +  LV ++ +       +Y  YP     + K++ F  F+  +
Sbjct: 239 TFIVGDALRSGALVSLLPEWEKGQVGLYALYPHRRFVSAKVRCFIEFVQER 289


>gi|330953576|gb|EGH53836.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 302

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 142/293 (48%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGS T A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRMFCQVMESGSLTPASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAELEQVEQGIAGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRPVDVISEGYDVVLRIG-VLEDSSLIARRIASIDRVYCASPAYLAERGTPQRPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G                D+P+       ++ N+   + +  + G GI  L
Sbjct: 183 DLHTHDCLPYGHSRQAQWR----FQGHDKPLTLNVSGRMRANNGELLRESAIAGLGITYL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV     + +LVR+++++     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVGAALRDGSLVRVLDELRPEPLTLSAVYPQHRQASRPVQAFIEFLRERL 291


>gi|307728138|ref|YP_003905362.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307582673|gb|ADN56071.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 367

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  L +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASALDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDVTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGTPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       +  +     + +  N+   + Q+ +LG GI
Sbjct: 181 RPEHLLEHPCLSLPS---EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|71735958|ref|YP_275765.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556511|gb|AAZ35722.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 302

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 140/293 (47%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEIEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRIG-VLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G                 +P+       ++ N+   +    V G GI  L
Sbjct: 183 DLHAHDCLPYGHSRQAQWR----FQVQGKPLILNISGRMRANNGELLRDTAVAGLGITYL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV     + +LVR++ D+     T+   YP+  + +  ++AF  F+  + 
Sbjct: 239 PTFIVGAALRDGSLVRVLYDLRPEPLTLSAVYPQHRQASRPVQAFIEFLRERL 291


>gi|158333823|ref|YP_001514995.1| LysR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158304064|gb|ABW25681.1| transcriptional regulator, LysR family [Acaryochloris marina
           MBIC11017]
          Length = 306

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +  F  V  +G F  A+ ++ LS+S +++ +  LE  +G++L  R  R +  T+
Sbjct: 1   MDKFDSMYAFTQVVDAGGFAAASRKMGLSRSQVNKLVINLEDSLGVQLLQRTTRKVVPTK 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   +   +  + +   +P G LRI   +  G   L   L +FL  + +
Sbjct: 61  TGLAFYERCQAILADVAEAEESITQYQTQPKGILRINAPMSFGTEYLAPLLPDFLTQHSE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+L+++ ID   +  D +IR+     +SSLI   L        AAP YL+    P 
Sbjct: 121 LKVELVLNDRFIDPIEEGFDISIRISAQPIASSLIVHTLCPAPRVLCAAPDYLEQHGIPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ + +G   P        L   D+         +  N+   + Q  + G GI
Sbjct: 181 HPDQLKHHSCLHYGYSEPLHHWQ---LKGPDQIHRIQVQGAICSNNGEVLRQATLKGLGI 237

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLP ++V ++     L  ++ +  +P   V+  YP +   + K++ F  F+
Sbjct: 238 ALLPIFLVGEDLKGERLQVVLSNYDSPGIAVHILYPVSKHLSAKVQLFTAFL 289


>gi|26246152|ref|NP_752191.1| putative transcriptional regulator YafC [Escherichia coli CFT073]
 gi|110640423|ref|YP_668151.1| LysR family transcriptional regulator [Escherichia coli 536]
 gi|191171382|ref|ZP_03032931.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|227884787|ref|ZP_04002592.1| transcriptional regulator YafC [Escherichia coli 83972]
 gi|300988186|ref|ZP_07178587.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|300990969|ref|ZP_07179419.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|301050543|ref|ZP_07197416.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|331656198|ref|ZP_08357160.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA206]
 gi|26106549|gb|AAN78735.1|AE016755_235 Hypothetical transcriptional regulator yafC [Escherichia coli
           CFT073]
 gi|110342015|gb|ABG68252.1| transcriptional regulator, LysR family [Escherichia coli 536]
 gi|190908316|gb|EDV67906.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|227838228|gb|EEJ48694.1| transcriptional regulator YafC [Escherichia coli 83972]
 gi|300297751|gb|EFJ54136.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300305635|gb|EFJ60155.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|300407500|gb|EFJ91038.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|307552055|gb|ADN44830.1| putative transcriptional regulator LYSR-type [Escherichia coli ABU
           83972]
 gi|315292134|gb|EFU51486.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
 gi|324011823|gb|EGB81042.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
 gi|331054446|gb|EGI26455.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA206]
          Length = 304

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISCYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLRFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|254436489|ref|ZP_05049983.1| hypothetical protein OA307_1359 [Octadecabacter antarcticus 307]
 gi|198251935|gb|EDY76249.1| hypothetical protein OA307_1359 [Octadecabacter antarcticus 307]
          Length = 295

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   +
Sbjct: 1   MEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V +        +      PSG LRI+   D G N L   L +FL  +PDI + ++
Sbjct: 61  DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLGEFPDITVNMV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +++  +  D AIR+ + ++ S+L  RKL        A+P Y +    P  I +L+
Sbjct: 121 LNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETSRRMIASPGYFEQFGRPQKIDDLN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+ + +     +      +   R +       L VN   S++   + G GIA LP +
Sbjct: 180 DHKLLHYSNQSNSAVWKLKAPSGEKRQVRT--AGWLTVNDGQSLLNAAISGLGIAYLPSF 237

Query: 248 IVKDNPN--LV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  D     LV   + D+   +  +Y  YP       K++AF +F+ 
Sbjct: 238 LYADALAKGLVEEAIPDLPVDTQGIYAVYPPGRFTQPKVRAFIDFLV 284


>gi|146337973|ref|YP_001203021.1| transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146190779|emb|CAL74784.1| putative transcriptional regulatory protein domain, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 297

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/295 (28%), Positives = 141/295 (47%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  V  SGSF  A  QL LS+S+IS+ I  LE  +G++L  R  R  + TE
Sbjct: 1   MDKLSSLRAFVKVVESGSFAEAGRQLRLSRSAISKYIGELEQSLGVQLIVRTTRHASPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  +L+     + +S   P G LR+   +  G   L   + +F++ +P+
Sbjct: 61  TGQRYFERAVAILAELDAADQAVSQSQAAPRGLLRVNAPMSFGTMRLGPVVADFMVRFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+Q++L +  +D   D  D  +R+ + ++SSSL+ R++  +     AAP YL     P 
Sbjct: 121 LQLQIVLSDDLLDPVQDGFDVTLRIAE-LESSSLVARRITPVDRVICAAPAYLARHGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S +EL +H+ +T+G L+         L   D          L VN+   +    + G GI
Sbjct: 180 SPEELRRHSSLTYGFLLTGNQWK---LTGRDGNHWIQPAWSLCVNNAEVLRDVAIKGQGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           AL+P +I  D   +  L  I+ D   P   +Y  YP     + K++ F +F+  +
Sbjct: 237 ALIPRFIAADALASGALTAILSDYTAPPLALYAIYPPTRHLSVKVRLFIDFLVER 291


>gi|330969973|gb|EGH70039.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 299

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 145/290 (50%), Gaps = 7/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V   GSF  AAE L +S+++ISR +S LE  +G +L +R  R L+LT++G + 
Sbjct: 6   EMQVFCTVVDKGSFVGAAEPLGMSKAAISRYVSTLEERLGARLLHRTTRRLSLTDEGRQF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    EV   ++  +  +  +S + SG LR+   +  G   L     +F+  YP +++++
Sbjct: 66  YHQAREVLAMMDEAEKAVSSASPEASGVLRVNAPVSFGVLHLAPIWADFMSAYPKVELEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D A+R+ + + +SSL+ R+L +  M   A+P YL +      + ++
Sbjct: 126 SLSDRLVDLVDEGIDAAVRIAR-MDNSSLVGRRLASTRMCLCASPAYLASHAPIEKLSDV 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H ++ + +        F      +        S ++ N+  +     + G GI+L P 
Sbjct: 185 AEHGVVAYSNFASGTEWQFE---GPEGSESVHTRSVVRCNNGDTCRAITLAGGGISLQPS 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++V  +    +LV I+ +  +    +Y  YP       K+++  NF+  +
Sbjct: 242 FMVAQDLRRGDLVEILPEYQSVELGIYVVYPTRKHLPAKVRSLINFLVER 291


>gi|66044614|ref|YP_234455.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255321|gb|AAY36417.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|330968936|gb|EGH69002.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 298

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 139/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA++L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ +YP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N  +D+  +  D AIRL + +Q S L+  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIQRYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V+   ++  LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKE 288


>gi|99080960|ref|YP_613114.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037240|gb|ABF63852.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 301

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 109/288 (37%), Positives = 172/288 (59%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA E L+LSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGEHLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LET    +++S     G+LR+ TT   G   L   L +    YP++
Sbjct: 61  GELLFDATKTMSKRLETASARIRDSEEGVFGELRVTTTTGFGTLWLAPRLIKLYEQYPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+T+ M  YA+  Y+     P +
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMTVQMRLYASRGYIDKFGWPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+E+  H LI       +  +  +    V + +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 IEEIRDHRLIC---QSLRSAQVGSAAVMVQKLMTHNPKSMLTVNNYFGVLQGVLQDLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P+LV+++ +  T    VY  YPE L+++ ++ AFR+F+
Sbjct: 237 VLPDYVTEDFPDLVQVLPNEDTNGVPVYLAYPEELRHSQRVSAFRDFV 284


>gi|254460462|ref|ZP_05073878.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           HTCC2083]
 gi|206677051|gb|EDZ41538.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 295

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 136/288 (47%), Gaps = 6/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   +
Sbjct: 1   MEAFATVVDQGGFTDAAKRMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V +        +      PSG LRI+   D G N L   L +FL  +PDI + ++
Sbjct: 61  DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLSEFPDITVNMV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +++  +  D ++R+ + ++ SSL  RKL        A+P Y +    P  I +L+
Sbjct: 121 LNNRYVELISEGFDMSVRIGE-LEDSSLRARKLTETTKRMIASPAYFEKYGRPEKIDDLN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+ + +     +      +   R I       L VN   S++   + G GIA LP +
Sbjct: 180 DHKLLHYSNQSSGNVWKVTAPSGEKRQIRT--AGWLSVNDGQSLLNAAISGLGIAYLPSF 237

Query: 248 I---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     +   +V  + ++ T +  +Y  YP       K++AF +F+  
Sbjct: 238 LYSEAMEQGLIVDAIPELPTETQGIYAVYPPGRFTQPKVRAFIDFLVQ 285


>gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074981|gb|ADJ64380.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 308

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V  SGSF  A +    S+ ++SRQ+S LE  +GI+L +R  R L+LT+
Sbjct: 1   MDKLQAMQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        E+   ++  + E+  +S +  G+LRI    D G   L     +F   +P 
Sbjct: 61  EGRVYFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + L ++ ID+  +  D AIR+   +  S ++ R L  + M A AAP +L     P 
Sbjct: 121 ITLNITLSDRTIDLLEEGFDMAIRISA-LGDSRMVARPLAPVRMIACAAPEFLARHGTPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  +  I++        +D+++             S + VN+  +     + G GI
Sbjct: 180 TPAELRDYPFISYS--YRAGGDDWSFRHVHGDTCQVRVRSTVYVNNGATCRAMAIAGQGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+ PD+IV        LV + E   T     V+  YP       K++  R+F+  + R
Sbjct: 238 AIQPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLIEQFR 295


>gi|109897758|ref|YP_661013.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109700039|gb|ABG39959.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 295

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 145/293 (49%), Gaps = 11/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA + SFT A++ L +S + +SRQIS LET + +KLFYR  R ++LT++
Sbjct: 2   MQWEGINEFVYVAEAESFTQASKNLAISTAQVSRQISALETRLNVKLFYRTTRKVSLTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    V   L+  +  +     KP GK+R+   +  G+  +   + +F+L Y ++
Sbjct: 62  GRLFYQHCRSVLDGLDAAERAITNLQSKPQGKIRLTAPVTYGEQQILPLVNDFMLQYAEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++   L N+ +D+     D AIRL K +  SS++ RKL T      A+P YL     P S
Sbjct: 122 EVTAYLSNQKVDLVEQGYDLAIRLGK-LSDSSMMARKLGTRTNSVCASPAYLAKFGFPHS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL KH+ +           D+      D+         L+ NS  S++   + G GI 
Sbjct: 181 LSELSKHSCLL-------GTLDYWHFRVDDKERNIRVKGRLRYNSGFSLVDAALKGLGIV 233

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPDY V+++     LV ++++       ++  YP     + K+++  +++  
Sbjct: 234 QLPDYYVQEHLESGALVSLLDNYRESEEGIWAIYPRNRHLSPKIRSLVDYLAE 286


>gi|163856178|ref|YP_001630476.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163259906|emb|CAP42207.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 299

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 137/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++++RVF  V  +GSF  AAE L +S++ +SR ++ LET +G++L  R  R  +LTE
Sbjct: 1   MDRFEEMRVFTAVVEAGSFVKAAESLRMSKAGVSRHVTELETRLGVRLMQRTTRRQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +     +  ++E  + E+   S +  G LR+   +  G   L      F   +P 
Sbjct: 61  EGQLFYERCKMLLAEVEDAETEVNSRSGEVGGLLRVNAPLTFGVRHLAPLWAVFKAQHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + L ++ +D+  +  D A+R+ + +  S+LI R L +  M   A+P Y++    P 
Sbjct: 121 LTLDITLADRVVDLVDEGYDVAVRITQ-LADSTLISRHLASTRMVLCASPAYIQAHGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL  H  I +     +    F+     +  +       ++ N+  + +Q  +   G+
Sbjct: 180 HPKELAMHAAIAYSYWAGRDEWRFH---GSEGEVSVRIQPVMRANNGDTCVQAALAHLGV 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P ++V D     +LV +M         +Y  YP       +++A  +F+
Sbjct: 237 ILQPTFLVGDALRAGSLVELMPQYRCAELGIYAMYPTRRHVPPRVRALVDFL 288


>gi|66046182|ref|YP_236023.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256889|gb|AAY37985.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 299

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 145/290 (50%), Gaps = 7/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V   GSF  AAE L +S+++ISR +S LE  +G +L +R  R L+LT++G + 
Sbjct: 6   EMQVFCTVVDRGSFVGAAEPLGMSKAAISRYVSTLEERLGARLLHRTTRRLSLTDEGRQF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    EV   ++  +  +  +S + SG LR+   +  G   L     +F+  YP +++++
Sbjct: 66  YHQAREVLAMMDEAEKAVSSASPEASGVLRVNAPVSFGVLHLAPIWADFMSAYPKVELEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D A+R+ + + +SSL+ R+L +  M   A+P YL +      + ++
Sbjct: 126 SLSDRLVDLVDEGIDAAVRIAR-MDNSSLVGRRLASTRMCLCASPAYLASHAPIEKLSDV 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H ++ + +        F      +        S ++ N+  +     + G GI+L P 
Sbjct: 185 AEHGVVAYSNFASGTEWQFE---GPEGSESVHTRSVVRCNNGDTCRAITLAGGGISLQPS 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++V  +    +LV I+ +  +    +Y  YP       K+++  NF+  +
Sbjct: 242 FMVAQDLRRGDLVEILPEYQSVELGIYVVYPTRKHLPAKVRSLINFLVER 291


>gi|83717647|ref|YP_440164.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651472|gb|ABC35536.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 399

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 141/298 (47%), Gaps = 10/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +T+ 
Sbjct: 101 MQFDDLRIFVTTVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDL 160

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +R  + +   +  T+  +        G L+I+  +  G   L   + EFL+ +P +
Sbjct: 161 GHEFYRRATRILADVAETEEAMSARHGDLRGTLKISAPMSFGIAYLSPLIAEFLVRHPAV 220

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y +  R P +
Sbjct: 221 RLHVDLSDRHVDLIGEGFDLALRIGA-LPDSTLIARRLGELRMVACCSPAYRRKHRAPAT 279

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L  H  + +G           W  T+        +   L  N+   I    + G GI
Sbjct: 280 PADLHGHACLLYGQEGRT-----GWEFTIGGARRTFEVQGALLANNGDVIRDAAIAGLGI 334

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ALLP +IV    D   LV ++E        V   YP+  ++    +AF  FI  + R 
Sbjct: 335 ALLPHFIVAAALDAGLLVTVLEPFAQSPLPVSAVYPQHRQDMATCRAFLGFIEERLRQ 392


>gi|90414769|ref|ZP_01222738.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90324135|gb|EAS40717.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 300

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 137/292 (46%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D   +FY +   GSF+ AAEQ+ L++S +S++I+ LE ++G++L YR  R LTLTE G
Sbjct: 3   NTDDFLIFYHLIEQGSFSKAAEQVGLTKSVVSKRITRLEQDLGVQLVYRTTRKLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   EVY+ ++  +  +       +G +R+      G+ LL   + EF   YP+I 
Sbjct: 63  EVFFGHAREVYYSVQNAEEAMSGLGESLTGTIRLTVPTISGELLLPKAISEFSAKYPEIH 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + LDN+ +DI  +  D AIR  + +  SS I R+LV  H     AP Y      P   
Sbjct: 123 IDMDLDNRFVDIVKEGFDLAIRTGE-LPDSSFIARRLVDAHWVICGAPEYFALNGVPKVA 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  HN + +        E        ++P           N+  ++ +  + G G+  
Sbjct: 182 SELVNHNCLAYSYQETGAKEWL--FKGENKPYTIKVNGNFTTNNASALRRAALFGQGLVY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +P  +V ++    +L+ ++++ +     +Y  YP       K+K F   ++ 
Sbjct: 240 VPKVLVAEDLKAGSLIEVLQEQVAKCLGIYAMYPYTRHQPIKVKLFIEHLYQ 291


>gi|310816546|ref|YP_003964510.1| transcriptional regulator, LysR family protein [Ketogulonicigenium
           vulgare Y25]
 gi|308755281|gb|ADO43210.1| transcriptional regulator, LysR family protein [Ketogulonicigenium
           vulgare Y25]
          Length = 328

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/289 (38%), Positives = 170/289 (58%), Gaps = 4/289 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTE
Sbjct: 21  AMDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEEALDTTLFHRHARGLILTE 80

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L   T  +  +LE     +++S     G L++ TT   G   L   L +    YPD
Sbjct: 81  QGELLFEATRSMNKRLEAAAARIRDSEDGVFGTLKVTTTTGFGTMWLAPRLGKLYDQYPD 140

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I LIL+ + +D+ M  AD AIRL++P Q+  +I+++L+ + M  YA P YL+N     
Sbjct: 141 LKIDLILEERILDLPMREADVAIRLKEPSQAD-VIRKRLMAVRMRLYATPEYLQNSPPIN 199

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++++ +H LI+     P+ +   N      R +     S L VN+Y  ++Q  + G GI
Sbjct: 200 RLEDIAQHRLISQSLNSPQPVAAINL---SQRLMTFDMASALTVNTYYGVLQGVLAGIGI 256

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPDY+ +D+PNL R++  + +    V+  Y E L+ + ++ AFR+FI
Sbjct: 257 GILPDYVTEDSPNLCRVLPYLESSEIPVFIAYAEELRQSRRIAAFRDFI 305


>gi|149910250|ref|ZP_01898895.1| hypothetical transcriptional regulator [Moritella sp. PE36]
 gi|149806719|gb|EDM66684.1| hypothetical transcriptional regulator [Moritella sp. PE36]
          Length = 303

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 141/299 (47%), Gaps = 14/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +RVF  V   GSF+  A  L+++ SS++R I  LE+E+G+ LF R  R L LTE G 
Sbjct: 2   LNLIRVFIKVVELGSFSKTASVLNMAPSSVARNIDSLESELGVTLFKRSTRQLLLTEDGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      ++    +     +Q+ + +P G L+I+     G+  +   L EFL  YP ++I
Sbjct: 62  QFCERAEKLLADADDLVSSMQQVNQEPEGVLKISAFESFGRQCISPLLPEFLARYPKVKI 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ LDN+ ID++ +  D  IR+ +P   S+L  R L T H    A+P YL     P +  
Sbjct: 122 EIELDNQVIDLNGENVDLGIRIGRP-SDSNLRARMLFTNHTILCASPEYLAKFGMPKAPA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L +HN +T  +   +C     W    ++ I +  +   L       +++  +   G+ L
Sbjct: 181 DLSEHNCLTLANSRQRCY----WYFKKNKQITKVGVQGNLSSKGGSPLLEAALHDGGMLL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSF-----TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  ++  D   +  LV  +      ++      VY  Y  +      L+AF +F+  K 
Sbjct: 237 MSKWMTVDYIGDGKLVECLPQWQASAYEGASAEVYAVYHGSKYQRPALRAFIDFLVEKL 295


>gi|254255187|ref|ZP_04948503.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124900924|gb|EAY71674.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 299

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 139/297 (46%), Gaps = 10/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE
Sbjct: 3   NMELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P 
Sbjct: 63  SGHEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P 
Sbjct: 123 VRLNLDLTDRRVDVIGEGFDLVLRIGA-LEDSTLIARPLGAWKMIACASPAYLKRRGTPA 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L  H  + +G           W   VD       +   L  N+   +    + G G
Sbjct: 182 TPADLAGHTCLLYGRE-----RRVGWEFRVDGAARTFGVQGPLVANNGEVVRDAAIAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IALLP +IV    +   LV +++       T+   YP+  +    L+ F  F+  + 
Sbjct: 237 IALLPHFIVGAAIERGALVPVLDAYAPSPITLNAVYPQHREGFVTLRTFIGFLAERL 293


>gi|94313188|ref|YP_586397.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93357040|gb|ABF11128.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 350

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 132/293 (45%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   +++  +  V   G  + AA  + LS+S +S++IS LE E+G  L  R +R +  +
Sbjct: 28  MSLRTEEIEAYLRVVELGGISAAARHMGLSKSVVSKRISDLERELGASLLQRSSRRMQPS 87

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +        +L      + E++ +  G+LRI   +  G   L   + EF    P
Sbjct: 88  ESGRYFYEQARAAMSQLTQAAQSVSEAAQEVCGELRILAPMSFGTRWLSPLIAEFGRANP 147

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L LD++ +D++    D AIR+ + ++ S LI RKL         +P Y      P
Sbjct: 148 RLRLSLELDDRLVDLAYGGYDVAIRITR-LRDSDLIARKLAPSRRVVCCSPDYAARAGLP 206

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++++  H  +++ + +P  +  F   A  + P           N+   +    + G G
Sbjct: 207 RTVEDIGHHACLSYSNSLPGQIWTFQPDAHEEAPKTITPRGIYTANNGEVLRDAVLAGHG 266

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP +IV ++     L+ +          ++  YP     + KL+A   F+
Sbjct: 267 LAVLPRFIVWEDLRAGRLIEVQPGATPVEDGIFAVYPRNAFGSAKLRALVQFL 319


>gi|170693160|ref|ZP_02884321.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142158|gb|EDT10325.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 297

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 134/295 (45%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF   A +GSF  A   L ++  ++ + +  LE    ++L  R  R  +LTE
Sbjct: 1   MDRLTSMAVFVKAAETGSFAAAGAALGMTSQAVGKHVRLLEERYRMQLINRSTRRQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +  V  ++E  +         P GKLRI   +  G + L   L +++  +P+
Sbjct: 61  AGRAFYERSKSVLAEMEAAEALAANLQAAPRGKLRINAPVSFGAHSLVPTLAQYMRQHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ ID+  +  D  +R+  PI  S LI R +    +   A+P YL     PL
Sbjct: 121 VSVDLTLSDRLIDVIDEGYDAVVRIA-PIADSRLIARPIGPYRLTICASPAYLAERGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H    F       + +++ L   D     P  S   +N+  ++    V G+GI
Sbjct: 180 RPEDLTQHECPGFSYWGRGPLREWH-LVGPDGRHVVPVSSRFSINNGQALRNAAVEGAGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L P  +++++     LVR++ D   P   ++  +    + T KL++F +F+  +
Sbjct: 239 ILQPCAMLREDLAAGRLVRVLPDYEPPPLPIHLLFAPDRRPTPKLRSFIDFVVAR 293


>gi|328470902|gb|EGF41813.1| transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 337

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/298 (29%), Positives = 145/298 (48%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + L+++  V   G+FT  A QL  S S+IS+ IS LE ++G++L  R  R + LTE
Sbjct: 22  MDKLNLLKLYVSVVEQGNFTAVANQLGQSPSTISKAISRLEQDLGVRLINRTTRKVQLTE 81

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V   L++++ +L +S   PSG LR++  +  GQ+ +   + EF  LYPD
Sbjct: 82  AGFSYLETARNVITTLKSSEEQLAQSIASPSGTLRVSLPLSFGQHYIAPLIPEFCHLYPD 141

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++  DI  +  D AIR  K +  S+LI R+L  I M  +A+P Y+K    P 
Sbjct: 142 VKLDMSFSDEYTDILENGTDIAIRSGK-LNDSNLIARRLCPIDMGMFASPEYIKEFGTPD 200

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++ L +H  I +       +   +           P+     V++  ++     LG+GI
Sbjct: 201 HVEVLCQHKWILYRFKQSGRLLPLSMSFNGQSIEIRPKHQV-TVDNGYAMAVLASLGAGI 259

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A +P Y+ +D      LV + E   T    VY  YP       K+K F  +IF K ++
Sbjct: 260 AYMPHYLARDLVYEGKLVLVSEPQRTEDQAVYLYYPSREFVPAKVKVFIEYIFQKLKE 317


>gi|28868763|ref|NP_791382.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852002|gb|AAO55077.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|330872704|gb|EGH06853.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964165|gb|EGH64425.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016390|gb|EGH96446.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 298

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA +L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMELYPQLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N  +D+  +  D AIRL + +Q S ++  +L    M+  A+P YL+    P S+ 
Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRQMYLCASPSYLERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELSRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V+ +     LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 238 PDYYVQKHLKEGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKE 288


>gi|213969141|ref|ZP_03397280.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301383964|ref|ZP_07232382.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302064150|ref|ZP_07255691.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134077|ref|ZP_07260067.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213926139|gb|EEB59695.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 298

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA +L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMELYPQLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N  +D+  +  D AIRL + +Q S ++  +L    M+  A+P YL+    P S+ 
Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRMVATRLAPRKMYLCASPSYLERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELSRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V+ +     LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 238 PDYYVQKHLKEGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKE 288


>gi|330950655|gb|EGH50915.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 298

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 139/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA++L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ +YP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDVYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N  +D+  +  D AIRL + +Q S L+  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V+   ++  LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKE 288


>gi|238023814|ref|YP_002908046.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878479|gb|ACR30811.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 336

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 144/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  ++E T+   Q ++ KP GKLR+     LG+ ++   L EF   +PD
Sbjct: 61  DGAAYYERCVRILAEVEETEASFQINNRKPHGKLRVDMPGSLGRLVVIPALNEFRERFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL  C EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRIG-VLQDSSLVARRVGLFECVTVASPAYLARCGEPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           SI +L +H  + +     +     +W   ++    E ++   + VN   + +   + G G
Sbjct: 180 SIDDLAEHRAVNY--FSSRTGRTIDWAFLIEGKEVEVKMEGVVSVNDADAYVTCGIEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V     +  L  ++ D       +   YP +   + K++ F ++I  
Sbjct: 238 LIQPPLFMVLPQLRSGVLKEVLTDHKPLPMPISVVYPHSRHLSPKVRVFVDWIAE 292


>gi|126737905|ref|ZP_01753635.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126721298|gb|EBA18002.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 301

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/288 (35%), Positives = 169/288 (58%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LE     +++S  +  G+LR+ TT+  G   L   L +    YP++
Sbjct: 61  GELLFDATKSMSARLEAASARIRDSEEEVFGELRVTTTVGFGTLWLAPRLTKLYEQYPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q+  L++++L+T+ M  YA+  YL     P +
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQAD-LVRKRLMTVQMRLYASRKYLDEHGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ++DKH LI       +       + ++   +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 VDDIDKHRLICQNQRSAQVGSASVLVKSL---LTRNPASLLTVNNYFGVLQGVLHDLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ ++ P LV ++         VY  YPE L+++ ++ AFR+F+
Sbjct: 237 ILPDYVTEEFPELVEVLHSDENSGVPVYLAYPEELRHSQRVSAFRDFV 284


>gi|254509622|ref|ZP_05121689.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221533333|gb|EEE36321.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 301

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 139/298 (46%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFSNVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L +FL +YPD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSDPSGLLRISVATDFGVNHLSPVLSDFLSVYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ S+L  RKL        AAP Y++    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDVAVRIGE-LEDSTLRARKLTETVKRMVAAPSYIEQFGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ +       +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNEHKLLHYSSQSSGSVWKLTAPSGEKRQVRT--AGWLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP Y+  D   +  +V  M  +      +Y  YP       K++AF +F+     +
Sbjct: 238 AHLPSYLYADALKSGEVVDAMPSLPDEVQGIYAVYPPGRFTQPKVRAFIDFLVDAFAE 295


>gi|86145017|ref|ZP_01063349.1| putative transcriptional regulator [Vibrio sp. MED222]
 gi|218677043|ref|YP_002395862.1| Transcriptional regulator [Vibrio splendidus LGP32]
 gi|85837916|gb|EAQ56028.1| putative transcriptional regulator [Vibrio sp. MED222]
 gi|218325311|emb|CAV27333.1| Transcriptional regulator [Vibrio splendidus LGP32]
          Length = 289

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 143/294 (48%), Gaps = 11/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA   SFT AA++L  S + ISR+++ LE  + +KL  R  R ++LTE G
Sbjct: 3   NWEGVSEFVAVAERESFTGAAQKLATSVAQISRRVANLEERLAVKLLNRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P G L++   +  G+  L   L +FL L+P ++
Sbjct: 63  QLYYQQCKLLVEGLEIAELAVTQMQSTPKGLLKVTAPVTYGERQLAPILHQFLKLHPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L N+ +D+     D AIRL + ++ SSL+ +KL    ++  A+P Y++   EP ++
Sbjct: 123 LELMLTNQKLDLIDSGVDVAIRLGR-LEDSSLVAKKLSQRQLYVCASPEYIERYGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +          E +       RP        ++ NS L++        G+  
Sbjct: 182 SELSNHQCLV------GGFEHWR-FKENGRPRSVRVNGRIKCNSGLALQDAAKQSIGLVQ 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP+Y V ++     LV ++ D       ++  YP+    + K++   +F+  + 
Sbjct: 235 LPEYYVSEDLESGELVEVLSDYRDDKEGIWALYPQNRNLSSKVRLLVDFLSEQL 288


>gi|330943890|gb|EGH46123.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 301

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 130/295 (44%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +S  +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FQAMRVYVKVVEAGSLTAAAQACSISTTMVSNHLRALEERLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    EV   +  ++   +++   P+G LRI   +  G  +L   L EF   +P
Sbjct: 60  EFGTAYYERCLEVLGLVAESEQLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+L N+ +D+  +  D AIRL    +SS LI R L    +   AAP YL     P
Sbjct: 120 EVKLDLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--NWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVL 237
              ++L +HN + F              W  T  D  +       +  N+   + Q    
Sbjct: 180 THPEDLRQHNCLAFAYPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     LV +  D   P       Y +      KL++F  +
Sbjct: 240 GMGVVMLPDALVQRDLQEGRLVALFPDYQLPRRPTNLLYVQDRYRLPKLRSFVEY 294


>gi|107023527|ref|YP_621854.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690610|ref|YP_836233.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893716|gb|ABF76881.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648699|gb|ABK09340.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 294

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 7/289 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S+I ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  +++  + EL +S   P G+LR++        LL   L +F+  YP+I++ +   
Sbjct: 69  CRRVIAEIDAAEQELTQSVEAPRGRLRVSLPT--IGTLLLPVLADFMAAYPEIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R   P   S L  R L     H  A+P YL+    P +  +L +H
Sbjct: 127 DRIVDVIDEGFDVVLRTGHP-TDSRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLAQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +   A       E  +S +  N+  + + + + G GIA LP++ V
Sbjct: 186 RCLHYRFPSSGKLEIWPLRAPRAGTPPEVPVS-MVSNNAETRLCFALRGLGIACLPEFFV 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +D   +  L  +++D +      Y  +P       KL+AF +++    R
Sbjct: 245 RDTLADGRLRAVLDDHVASRTPFYVLWPSGRHPLPKLRAFVDYMAEHLR 293


>gi|77457351|ref|YP_346856.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381354|gb|ABA72867.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 298

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 137/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA    FT AAE+L +S S ISRQI  LE  +  +L YR  R +TLTE G 
Sbjct: 6   WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIVRLEERLQTRLLYRSTRRVTLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + + + +P G LR+   +  G+  +   +  F+  YP ++I
Sbjct: 66  TFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMGHYPQLRI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P YL+    P S+ 
Sbjct: 126 DIELTNRQLDLVHEGLDLAIRLGR-LQDSRLVATRLAPRRMYLCASPSYLERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +           D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELGRHNCLI-------GSSDIWQLEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V ++     LV ++E    P+  V+  YP+    + K++   +F+  
Sbjct: 238 PDYYVLEHLHSGALVSLLETHQPPNTAVWALYPQQRHLSPKVRKLVDFLKE 288


>gi|323975925|gb|EGB71020.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
          Length = 304

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+  Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASTDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETLDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++     +  LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIAHGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|170724490|ref|YP_001758516.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169809837|gb|ACA84421.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 297

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 138/291 (47%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F  +A + + + A + L LS    S  I+ LE  +G +L +R  R ++LTE+
Sbjct: 1   MNIEDLRLFVRLAVTNNISKAGQDLGLSPPLASIHINRLEKTLGARLVHRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+  +++     + +   +P G L+I+     G+  L   LK FL  +P I
Sbjct: 61  GITFLPHAEEIILRVDEAMESVGKGLTRPQGVLKISAPSSFGRMHLMPALKGFLTQHPAI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + + L +  +D+     D  IR  + ++SSSL+ RKL        A+P Y++   +P S
Sbjct: 121 SVDIQLTDTMVDLVAGGFDVGIRNSE-LKSSSLVARKLAVDRRIICASPEYIRENGQPSS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H  I    L     E      T++  +       ++V+   ++   C+ G G+A
Sbjct: 180 PEELRDHQCINLKGLEGWTFE------TLNGNVNINTKGNVRVDQGEAVRDACINGMGVA 233

Query: 243 LLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNF 289
           +   +I  ++    +L++I++D       +++  YP +     K++AF ++
Sbjct: 234 MCATWIAYEHLKRGDLIQILKDYPLIDDASIWAIYPSSKLLAPKIRAFIDY 284


>gi|326794982|ref|YP_004312802.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326545746|gb|ADZ90966.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 299

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 133/292 (45%), Gaps = 8/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L +F  VA +GSF  AAE   +S  S+S++IS LE  +G +L +R  R L+LTE 
Sbjct: 1   MNASDLTLFAYVADTGSFNKAAEVAGISTPSLSKKISKLEKSLGAQLIHRTTRRLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +  ++      +  +S   SG ++++     G+ LL   + EF   +PDI
Sbjct: 61  GESLYVHAKNIEEQVNDAVASVSNASRGLSGTIKMSVPTISGELLLSEAIAEFCHQHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + + LDN   ++  +  D AIR    ++ SSLI + L+  +     +P Y+    EP +
Sbjct: 121 SVDMRLDNGFANLIEEGLDLAIRTG-ILEDSSLIAKPLIQSNWIVCCSPDYINKYGEPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +L  HN + +     +    ++W  T        RIS  +  N+  ++ +  + G GI
Sbjct: 180 PDDLKTHNCLAYTY---QAKGSYDWRFTHQGEELTVRISGSIATNNAQALRKAALAGFGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V ++     L  I+ D       VY  YP +     KL+     I
Sbjct: 237 VYVPRCCVYEDLVAGKLTAILTDYQPRQLGVYAIYPYSKYLPQKLRLLIEHI 288


>gi|295097113|emb|CBK86203.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 299

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 135/297 (45%), Gaps = 12/297 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AAE L L + S+SRQI  LE  +G +L +R  R ++LT+
Sbjct: 1   MDKIHAMQLFLRVAELESFSRAAETLSLPKGSVSRQIQALENALGTQLLHRTTRRVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+             SG+LR+   + + +N++   L  FL  +P 
Sbjct: 61  DGMVYYERAKDLLMNLDELDGMFLHDPSTISGRLRVDMPVAIARNVVIPKLPAFLQQFPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+   ++ S LI R L  + +   A+P YL     P 
Sbjct: 121 IELELSSSDRLVDVIREGFDCVVRVGN-LKDSGLIARPLGKLSVINCASPDYLTRFGYPE 179

Query: 182 SIQELDKHNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++ +L  H LI +   +   P+  E +N  AT     G      L VNS  +    C+ G
Sbjct: 180 TLDDLASHALIHYSATLGTRPQGFEYYNGSATQWVKTG----GVLTVNSTETYQAACIAG 235

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  +P   V+D      LV I+         V   YP     + ++  F  ++  
Sbjct: 236 LGIIQVPRVGVRDVLRTKKLVEILPQYRAEPMPVSLIYPHRRNLSRRVHVFMEWLTE 292


>gi|209515838|ref|ZP_03264700.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503686|gb|EEA03680.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 367

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDVTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGTPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       +  +     + +  N+   + Q+ +LG GI
Sbjct: 181 RPEHLLEHPCLSLPS---EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|145299672|ref|YP_001142513.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852444|gb|ABO90765.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 300

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 133/290 (45%), Gaps = 9/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V    SFT AA QL +S +  S+ +  LE  +  +L  R  R +  TE G   
Sbjct: 6   AMRTFIKVVECQSFTKAANQLGISVAMTSKLMQQLEESLSTRLLSRTTRQVNPTEAGQFY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++ +  +  +LE T  +L  ++ +P G L+++  +D G   L   L  F   +PD+++++
Sbjct: 66  YQRSQALLAELEETHSQLTRNNQQPQGTLKLSVPMDFGYLHLSPALPLFRERFPDLKLEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ + +  +  D A+R+   +  SSL+ + L  + +   A+P YL     P S ++L
Sbjct: 126 EYSDRRVALVEEGFDLALRIGN-LPDSSLVAKPLAMMKLEVCASPTYLARRGTPNSPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ + +    P  +            +       L+ N+ +++ +      GI L P 
Sbjct: 185 KQHDCLIYTLTQPDWV-----FKQGGEQLSVRPQGPLRANNGVALTRAACDHQGIILQPT 239

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +IV D   +  LV ++ +       +Y  YP     +GK++ F  F+  +
Sbjct: 240 FIVGDALRSGELVPLLPEWEKGQVGLYALYPHRRFVSGKVRCFIEFVQER 289


>gi|217970299|ref|YP_002355533.1| LysR family transcriptional regulator [Thauera sp. MZ1T]
 gi|217507626|gb|ACK54637.1| transcriptional regulator, LysR family [Thauera sp. MZ1T]
          Length = 299

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 7/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++ F  V  +GSF  AAE L LS+++ SR +  LET +G++L +R  R L+LTE G + 
Sbjct: 6   EMQTFCAVVDAGSFVGAAEALGLSKATASRYVGELETRLGVRLLHRTTRRLSLTEDGERF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  + EV   LE  + EL   S    G LRI   +  G   L      F  L+P +++++
Sbjct: 66  YARSREVLAGLEEAEAELHSRSGAARGLLRINAPVTFGIRHLAPLWGAFRDLHPQVRLEV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  +  D AIR+   + SS+L+ R+L    +   AAP YL     P    +L
Sbjct: 126 TLADRTVDLVEEGFDIAIRIAA-LPSSTLVCRQLARTRIVLCAAPAYLAAHGAPRLPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H +I +          F+     D  +       +  NS  +     + G G+ L P 
Sbjct: 185 ASHTVIAYSYWSGGDEWQFD---GPDGRVSVRTRPAVHTNSGDTCRAMALAGQGVILQPG 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++V ++     LV +M    + +  +Y  YP       K++A  +F+  +
Sbjct: 242 FLVAEDLAAGALVELMPAYRSVTLGIYALYPTRKFVPPKVRALVDFLAER 291


>gi|323528454|ref|YP_004230606.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385456|gb|ADX57546.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 334

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 143/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q  + KP GKLRI     +G+ L+   L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPQLCEFHKRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y++    P 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVVRVGA-LQDSSLVARRIGLFEGVTCAAPEYIQRAGMPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S+++LD H  + +     +     +W   VD    E ++ S + VN   + +   + G G
Sbjct: 180 SLEDLDNHKAVNY--FSSRTGRTIDWAFLVDGKEVEVKMKSIVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     +  LV ++ ++      +   YP +   + K++ F ++I  
Sbjct: 238 LIQPALFMVLPHLRSGQLVEVLPELKPLPMPISAVYPHSRHLSPKVRVFVDWIAE 292


>gi|89093661|ref|ZP_01166608.1| Putative transcriptional regulator, LysR family protein
           [Oceanospirillum sp. MED92]
 gi|89082057|gb|EAR61282.1| Putative transcriptional regulator, LysR family protein
           [Oceanospirillum sp. MED92]
          Length = 284

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 135/283 (47%), Gaps = 11/283 (3%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            VA + SFT AA+ L +S + +SRQIS LE  + +KLFYR  R +T+TE G   +     
Sbjct: 2   AVAETSSFTSAAKLLGISTAQVSRQISELEDRLAVKLFYRTTRKVTITEAGQVYYHHCKP 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +   LE  +  + +    P GKLR+      G++ +   + EF+  YP +++++   N+ 
Sbjct: 62  LIEGLEEAERAITQHQTVPKGKLRMTAPTTFGESKIAPLVSEFIAKYPALEVEIHFTNQK 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           +D+  +  D AIRL K ++ SS++ ++L +  +    +P YL     P  IQELDKHN +
Sbjct: 122 VDLVKEGYDLAIRLGK-LEDSSMMAKRLASRKLQVCGSPDYLAKHGTPHLIQELDKHNCL 180

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252
                      +F       +         ++ NS L++    + G G+  LPDY ++ +
Sbjct: 181 L-------GTLEFWRFQESGQERNIRVKGNIRFNSGLALTDAALKGLGLVQLPDYYIQQH 233

Query: 253 ---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                L+ ++         ++  YP     + K++    ++  
Sbjct: 234 FKTGCLIPVLNTFQPEDEGIWALYPNNRFLSPKVRMLIEYLAE 276


>gi|84515576|ref|ZP_01002938.1| transcriptional regulator, LysR family [Loktanella vestfoldensis
           SKA53]
 gi|84510859|gb|EAQ07314.1| transcriptional regulator, LysR family [Loktanella vestfoldensis
           SKA53]
          Length = 301

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 108/291 (37%), Positives = 169/291 (58%), Gaps = 4/291 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEETLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LET    +++S  +  G LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATKSMNKRLETASARIRDSEEEVFGDLRVTTTTGFGTLWLAPRLPKLFEAYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+++ M  YA+P YL+    P S
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMSVRMRLYASPTYLETNGTPES 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H L+         ++       V   +         VN+Y  ++Q  +   GI 
Sbjct: 180 LLDLSDHRLVC---QSLNSIQVAAGATLVQHLLTSDIQHLFTVNNYFGVLQGVLNNIGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +LPDY+ +D P+LVR++ D+ +    V+  YPE L+ + ++ AFR+F+  +
Sbjct: 237 VLPDYVTEDFPDLVRVLPDLESGEVPVFLAYPEELRQSKRIAAFRDFVQEE 287


>gi|330818692|ref|YP_004362397.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327371085|gb|AEA62441.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 352

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDLTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEQHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       D  +     + +  N+   + Q+ +LG GI
Sbjct: 181 HPEHLMEHPSLSLPS---EYWGDERVFTGPDGEVRVRPTNVIVANNTEMLRQFALLGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AMLPSYLIGGDTARGKLVRLLPDYRLPQVEINVAYPSRRHLPAKVRTFIDHLVE 291


>gi|323170995|gb|EFZ56644.1| hypothetical protein ECLT68_4317 [Escherichia coli LT-68]
          Length = 304

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AA QL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAVQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|238755698|ref|ZP_04617032.1| Transcriptional regulator [Yersinia ruckeri ATCC 29473]
 gi|238706065|gb|EEP98448.1| Transcriptional regulator [Yersinia ruckeri ATCC 29473]
          Length = 306

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 135/289 (46%), Gaps = 4/289 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F ++   GSF+ AAE   ++ S +S++I  LE  +G +L YR  R L LTE G  
Sbjct: 9   NDLILFALIVDCGSFSKAAEAAGMTSSVVSKRIGRLEKSLGARLLYRTTRSLRLTENGEV 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+R   E+   ++     + E S + +G +R++     G+ LL   + EF   +P+++I+
Sbjct: 69  LYRHAREISANIQAALYAVSERSDELTGAIRMSVPTISGELLLSECVAEFCAQHPNLKIE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+  +  D AIR    +  SSLI R ++        +P YL+   EP S ++
Sbjct: 129 MRLENRFVDLVNEGIDLAIRTG-TMPDSSLIARPILDSRWVIVCSPGYLEQQPEPTSAKD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN +T+                 +          L VN+  +I +  + G GIA++P
Sbjct: 188 LLNHNCLTYTYQESGTANWLMKQPGSNEIYELQVNGNLSVNNARAIRKAVISGHGIAMVP 247

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +   +  LV I+    +    VY  YP       K +     I 
Sbjct: 248 RCMVYEDIQDGKLVEILAGHCSKVLGVYAVYPYTRNLPLKTRLLIEHII 296


>gi|283835902|ref|ZP_06355643.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291068073|gb|EFE06182.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 299

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 134/299 (44%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+ L L + S+SRQI  LE  +G +L +R  R + LT+
Sbjct: 1   MDKIHAMQLFTRVAELESFSRAADTLGLPKGSVSRQIQALENHLGTQLLHRTTRRVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+             SGKLR+   + + +NL+   L  FL  YP 
Sbjct: 61  DGMIYYERAKDLLSNLDELDGLFHHDPASISGKLRVDMPVGVARNLVMPRLPGFLHQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L   ++ +D+  +  DC +R+   ++ S LI R L  +     A+P YL     P 
Sbjct: 121 LELELSSSDRLVDLIREGFDCVVRVG-TLKDSGLIARPLGKLTQVNCASPKYLARFGYPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+++L  H ++ +   +    + F  +AT            L VNS  +    C+ G GI
Sbjct: 180 SLEDLASHAVVHYSVNLGTRAQGFE-VATGSGIQWVKTGGMLTVNSTETYHAACLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      LV ++         V   YP     + ++  F  ++    +D+
Sbjct: 239 IQVPRVGVREALRAGTLVEVLPQYRAEPMPVSLLYPHRRNLSRRVHLFMEWLTGVMKDY 297


>gi|77361138|ref|YP_340713.1| transcriptional regulator LysR [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876049|emb|CAI87271.1| putative transcriptional regulator LysR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 288

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 142/291 (48%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA + SFT A++++ +S + +SRQIS LE  + +KLFYR  R ++LTE+
Sbjct: 1   MQWEGISEFVHVAENASFTQASKKMAISTAQVSRQISALENRLNVKLFYRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    V   L+  +  +      P GK+++  ++  G+  +   + +F+L Y ++
Sbjct: 61  GRVFYQHCRSVLDGLDAAERAITNLQTTPQGKIKLTASVTYGEQQVLPLVSDFMLQYSEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +   L N+ ID+     D AIR+ K +  SS++ +KL T   +  A+P YL+    P +
Sbjct: 121 AVSAYLSNQQIDLVEGGYDLAIRIGK-LADSSMMAKKLGTRTSYVCASPEYLEKHGIPHA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I EL KH+ +           D+       +         L+ NS  S+    + G GI 
Sbjct: 180 ISELSKHSCLL-------GTLDYWHFMESGKEKNIRVAGKLRYNSGYSLADAALKGLGIV 232

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY V+    +  L+ +++    P   ++  YP     + K++   +++
Sbjct: 233 QLPDYYVQNHLQSGELITLLDSYRVPDEGIWAIYPHNRHLSPKIRLLVDYL 283


>gi|91209276|ref|YP_539262.1| putative LysR-type transcriptional regulator [Escherichia coli
           UTI89]
 gi|117622490|ref|YP_851403.1| putative transcriptional regulator LYSR-type [Escherichia coli APEC
           O1]
 gi|218557144|ref|YP_002390057.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|218688078|ref|YP_002396290.1| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|237707798|ref|ZP_04538279.1| transcriptional regulator [Escherichia sp. 3_2_53FAA]
 gi|306813372|ref|ZP_07447565.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
 gi|91070850|gb|ABE05731.1| putative transcriptional regulator LYSR-type [Escherichia coli
           UTI89]
 gi|115511614|gb|ABI99688.1| putative transcriptional regulator LYSR-type [Escherichia coli APEC
           O1]
 gi|218363913|emb|CAR01578.1| putative DNA-binding transcriptional regulator [Escherichia coli
           S88]
 gi|218425642|emb|CAR06429.1| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|222032033|emb|CAP74772.1| Uncharacterized HTH-type transcriptional regulator [Escherichia
           coli LF82]
 gi|226899008|gb|EEH85267.1| transcriptional regulator [Escherichia sp. 3_2_53FAA]
 gi|294489865|gb|ADE88621.1| transcriptional regulator, LysR family [Escherichia coli IHE3034]
 gi|305854135|gb|EFM54574.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
 gi|307628311|gb|ADN72615.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UM146]
 gi|312944811|gb|ADR25638.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315289708|gb|EFU49101.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|323948758|gb|EGB44658.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323958792|gb|EGB54491.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
          Length = 304

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/294 (28%), Positives = 141/294 (47%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +       +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFHRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISCYGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETIDDLKQHICLRFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L DY++        LV +M D + P        Y      + +++AF +F+
Sbjct: 236 IACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFL 289


>gi|91776942|ref|YP_546698.1| LysR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710929|gb|ABE50857.1| transcriptional regulator, LysR family [Methylobacillus flagellatus
           KT]
          Length = 299

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 134/299 (44%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  VA   SFT AA  L L + SIS  +  LE  +G +L  R  R + LT 
Sbjct: 1   MDKLHAMTVFTRVAELSSFTQAATSLGLPKGSISMAVQKLEAHLGTRLLQRTTRKVVLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   ++   ++  +           G++R+   + + + +L  +L  FL  +P 
Sbjct: 61  DGELFYQRCKDLLTDMDELESMFLLDETGIQGRIRVDVPLAVAREVLMPHLPAFLRQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+L   ++ +D+  +  DC IR+   +  S L+ R++    +   A+P YL+    P 
Sbjct: 121 IRIELSSTDRKVDLVAEGFDCVIRVGS-LGDSGLVARQVGLHPIVNCASPAYLQQHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL +H ++ +  ++      + ++   D  I     S + VN+  +  Q C+ G GI
Sbjct: 180 TLDELTRHFVVHYTQVLGSEEAYWEYVQGSD-IIRMKMQSIITVNNSDAYTQACLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P    +       LV ++ +       V   YP       +++ F +++  + +D+
Sbjct: 239 IQVPQAAARPYIMQDRLVELLPEYRAAPMPVSMLYPNRRHQPRRVRVFMDWLVDRLQDY 297


>gi|308049767|ref|YP_003913333.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307631957|gb|ADN76259.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 297

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA + SFT A ++L +S + +SRQIS LE  +G +L YR  R ++LTEQG 
Sbjct: 4   WEGINEFVAVAETESFTAAGQRLGISTAQVSRQISALEVRLGCQLLYRTTRRVSLTEQGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L++    +   LE  Q  + +      G+ R+   ++ G+  L   L EF   YP++Q 
Sbjct: 64  QLYQHCRPLLDGLEEAQRLVSDQQDVLRGRFRLTAPVNFGEQRLAPLLAEFCADYPEVQA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++L N+ +D+  +  D AIR+ + +  SSL  R+L +  +   A+P YL+    P  I 
Sbjct: 124 EMVLSNQRLDLIQEGLDLAIRIGE-LPDSSLKARRLGSRELVVCASPAYLQRAGTPQDIG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++ +H  +           D        +P         + NS +++++    G G+A L
Sbjct: 183 DIARHRCLL-------GTTDIWRFRVGGQPRTVKVNGAFRCNSGVAVLEAAQQGLGLAQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P + +++   +  LV ++         ++ CYP     T  ++AF   +   
Sbjct: 236 PAHYLEEALSSGRLVTVLSAFTPEPEDIWACYPPNRHVTATVRAFIEVLRAA 287


>gi|148652840|ref|YP_001279933.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571924|gb|ABQ93983.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1]
          Length = 298

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 137/284 (48%), Gaps = 11/284 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA   SFT AA++L +S + +SRQ+S LE  + IKL YR  R ++LTE+
Sbjct: 5   MKWEGISEFVYVAEYESFTRAAKELGISIAQVSRQVSALEKRLNIKLLYRTTRKISLTEE 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    V   L+  +  +     KP GK+++   +  G+  L   + +F++ YPDI
Sbjct: 65  GQVFYKHCRGVLDGLDAAEQAISSLQSKPQGKIKLTAPVTYGEQQLLPLINDFIVQYPDI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++   L N+ +D+     D A+R+ K +  S+L+ +KL        AAP YL     P +
Sbjct: 125 KVTAFLSNQKLDLVEGGYDLAVRIGK-LSDSTLMAKKLGHRTNFVCAAPDYLDRYGTPQT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL  HN +           D+                 ++ NS  S++   + G G+ 
Sbjct: 184 LAELASHNCLL-------GSLDYWHFKQAQSERNIRVSGSVRYNSGYSLVDAALKGIGMV 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            LPDY V+   D+  L+ +++D   P   ++  YP+    + K+
Sbjct: 237 QLPDYYVQKYLDSGKLISVLDDFREPEEGIWAVYPQNRHLSTKM 280


>gi|161504629|ref|YP_001571741.1| hypothetical protein SARI_02745 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865976|gb|ABX22599.1| hypothetical protein SARI_02745 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 304

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V   GSF+ AAE+L  + S+ISR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVAVIEGGSFSRAAERLGQANSAISRSVKKLEMKLGVNLINRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +   +   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQIILQDMAAAETEILETRNTPRGLLRIDAATPVILHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EVKLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPDYIDLYGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL +H  + F + +         +A  D  + E   S L  NS  ++ Q C+ G+G
Sbjct: 180 KSVEELKQHVCLGFTEPLLLNTWP---VACCDGQLYEIH-SGLSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D   P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIAQGTLVELMTDKRLPVEMPFSAVYYSDRAVSPRIRAFVDFLSEHVK 294


>gi|149911195|ref|ZP_01899819.1| hypothetical transcriptional regulator [Moritella sp. PE36]
 gi|149805722|gb|EDM65720.1| hypothetical transcriptional regulator [Moritella sp. PE36]
          Length = 324

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 144/299 (48%), Gaps = 8/299 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+++    + + +F  V  +GSFT AA+    S S IS++I+ LE+ +G++L +R  R L
Sbjct: 18  MAYNAQLLNGIVIFVEVVNNGSFTLAAQTSGHSTSYISKEINKLESRLGVRLIHRTTRSL 77

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT +G    +   ++    E T+  L    +KP G LRI+     G + +Q     FL 
Sbjct: 78  SLTPEGEIYFQQCQQIISDAEQTEEALNGHQLKPKGTLRISCPTSFGHSRMQSIFSRFLA 137

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP + ++L L+N+ +D+  +  D  IR    +  S+LI +K+ + H    A+P YL++ 
Sbjct: 138 KYPLVDLELDLNNRKVDMVSEGFDVLIRGSGQLDDSTLISKKVFSSHGVIIASPEYLRHA 197

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P    EL +H +I +  L  K    + ++   D+       S +  NS    +  C+ 
Sbjct: 198 GTPQDPSELIEHKIINYSHL--KQPNTWTFIDNNDKQHHVQLKSRVLTNSPEMELSLCLA 255

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI  +P + + D      LV +  D       +Y  YP     + K++ F +F+  +
Sbjct: 256 GHGITRMPLFNLFDEIETGKLVELFSDFKRQEVNLYLVYPSRKHVSSKVRCFIDFVVAE 314


>gi|295096919|emb|CBK86009.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 301

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S+ISR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELTIFVAVVESGSFSRAAEQLGQANSAISRSVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + E+ ES   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSVLQEMAAAETEIMESRSTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIIASPQYIAEHGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +H  + F + +        W               L  NS  ++ Q C+ G+G
Sbjct: 180 ETVEELKQHLCLGFTEPVSLN----TWPVACHDGQLHEITCGLSSNSGETLKQLCLEGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D   P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIAAGQLVELMADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHIK 294


>gi|221212215|ref|ZP_03585193.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168300|gb|EEE00769.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 335

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 138/291 (47%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 28  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDTRLFQRTTRSMSLTREGELFYEN 87

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LRI +T   G+ ++   L++F   YPDI ++L+L
Sbjct: 88  CRPGIDHLAQALEDMRELRSGPPSGHLRIGSTPGFGRKVIAPLLRDFHARYPDISLELLL 147

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +D S D  D A R  + ++ S+++ R+L+ + M   A+P Y      P  + EL +
Sbjct: 148 NDRPVDFSADRIDVAFRDGR-MEDSAIVARQLIPMQMIVCASPAYAHRYGLPRHVDELAQ 206

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I       +  E   W   VD    + +++     N    +++  + G GIA LP Y
Sbjct: 207 HRCINLRTASGRVKE---WEFKVDGLAQQAQLAAHHTFNDMDLVVRAVLDGLGIAQLPAY 263

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V D   +  LV  +          Y CY        +++AF +++  + R
Sbjct: 264 QVCDLLADGQLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRAFIDYMIEQTR 314


>gi|285019715|ref|YP_003377426.1| transcriptional regulator, lysr family transcription regulator
           protein [Xanthomonas albilineans GPE PC73]
 gi|283474933|emb|CBA17432.1| putative transcriptional regulator, lysr family transcription
           regulator protein [Xanthomonas albilineans]
          Length = 302

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +RVF  V     F  AA+ L +S +S++RQ++ LE  +G +L  R  R ++ + 
Sbjct: 1   MDTLEAMRVFVAVVDRNGFNAAADALGISTASVTRQVAWLEQRLGSRLLNRTTRRVSPSS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++    +  + +  +  + E ++ PSG LRI          L   L  +   YP 
Sbjct: 61  VGAAYYQRCQLLLAEFDDMEAAVGEQALTPSGTLRINAPFSFSIARLGPRLAGYSARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +DI  +  D AIR+ + + + +LI RKL    ++  AAP YL     P 
Sbjct: 121 VALDLSLSDRVVDIVEEGFDLAIRITRHV-APTLIARKLGEAQVYLCAAPSYLARAGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E+  H  + +  +    +     L   D          L  N+   + +  + G GI
Sbjct: 180 MPTEIADHAFLNYSYMPLDTL----ILHGPDGDTQVRVHGSLCANNGDVLREAAIAGMGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L PD++ +   ++  LVR++ D       VY  Y        K+++F +++ 
Sbjct: 236 VLQPDFMAEAALEDGRLVRVLPDHQLGPIGVYAVYANRSHLAPKVRSFIDYLV 288


>gi|260596624|ref|YP_003209195.1| HTH-type transcriptional regulator YafC [Cronobacter turicensis
           z3032]
 gi|260215801|emb|CBA28245.1| Uncharacterized HTH-type transcriptional regulator yafC
           [Cronobacter turicensis z3032]
          Length = 296

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L +F  V  S SF+ AAEQL+L+ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 2   MKASSDELIIFVAVVESRSFSRAAEQLNLANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   +V  ++ + + EL ES   P G LRI     +  +LL   +K F   YP
Sbjct: 62  EEGERYFRRVQQVLQEMASAETELMESRQTPRGLLRIDAATPVILHLLLPMIKPFRERYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P YL     P
Sbjct: 122 EVTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFISYRKIVASPDYLARHGVP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L +H  + F + +        W    +          +  NS  ++ Q C+ G+G
Sbjct: 181 ETICDLKEHICLGFTEPVSLN----TWPVACEDGQLLEITPGMTSNSGETLKQLCLTGNG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++       ++V ++ +   P        Y      + +++ F +F+  + +
Sbjct: 237 IACLSDYMIDKEIKRGDVVELLAEYRLPVEMPFSAVYYSDRAVSTRIRTFIDFLSEQLK 295


>gi|167032182|ref|YP_001667413.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166858670|gb|ABY97077.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 298

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/295 (28%), Positives = 142/295 (48%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W+ +  F  VA SG FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TL+
Sbjct: 1   MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEERLQTRLLYRSTRRVTLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP
Sbjct: 61  EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + L N  +D+  +  D AIRL + +  S L+  +L    M+  A+P YL+    P
Sbjct: 121 QLRVDVELSNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLERYGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL +HN +           D   L    R I +      + NS  +++   + G G
Sbjct: 180 HSLSELARHNCLV-------GSSDLWALQQDGREISQRVQGNWRCNSGQAVLDAALQGIG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  LPDY V ++     LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 233 LCQLPDYYVLEHLNNGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYLKE 287


>gi|167725586|ref|ZP_02408822.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 331

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LR+   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLVEHPCLSLPS---EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|78060745|ref|YP_367320.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965295|gb|ABB06676.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 305

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 140/296 (47%), Gaps = 10/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GHEFYARAQRILAEIADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRIGS-LEDSTLIARALGAWRMVACASPAYLKRQGTPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L  H  + +G           W   VD       +   L  N+   +    + G GI
Sbjct: 180 PADLAGHTCVLYGRE-----RRIGWEFRVDGAARTFDVQGPLVANNGEVVRDAAIAGLGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD+IV    D+  LV +++       T+   +P+  +    L+ F  F+  + 
Sbjct: 235 ALLPDFIVGAALDSGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFLAERL 290


>gi|108762266|ref|YP_632529.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108466146|gb|ABF91331.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622]
          Length = 293

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 145/289 (50%), Gaps = 9/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L VF  V ++GSFT AA  L + +S++SR++S LET VG +L  R  R L LT+ 
Sbjct: 1   MDLNELLVFARVVQAGSFTAAARGLRMPKSTVSRKVSELETRVGAQLLQRTTRKLRLTDV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  + E  ++ +      P G LR+ T +    + +   +  F+  YP++
Sbjct: 61  GRTYYEHCARIVAEAEQAELAVTRMQAAPHGLLRVTTPLTF--SFIGPLVSTFIKQYPEV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++++  ++++D+  +  D AIR  + +  SSL+ R+L  +     AAP YLK    P +
Sbjct: 119 QLEMVCTDRNVDLVAEGFDLAIRAGR-LADSSLMARRLGIVERVVIAAPSYLKARGTPKA 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L+KH+ + FG  +   +     L + +R +     + + VN    +      GSGIA
Sbjct: 178 PKDLEKHDCLLFGAGLENNVWT---LHSGNRSVDIKVPARIVVNEPDMLYAVARAGSGIA 234

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LLP+           L RI+ D  +    V+  YP    ++ K+ AF  
Sbjct: 235 LLPNLHFTSELAAGRLQRILPDWSSTGAPVHAVYPSTRHHSPKVMAFVE 283


>gi|330831558|ref|YP_004394510.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328806694|gb|AEB51893.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 301

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 142/296 (47%), Gaps = 13/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA  G FT AA +L +S + +SRQ++ LE  +  KL  R  R + LTE G 
Sbjct: 4   WEGICEFVSVAEQGGFTPAARKLGVSVAQVSRQVAQLEDRLQAKLLLRTTRQVRLTELGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   L   ++ +      P G LRI   +  G++ +   + +F++ +P +++
Sbjct: 64  IYYRHCRQLLDNLYEAELAVGRHQAVPQGTLRITAPVSYGESRIAPLVNDFMVRFPQLEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L N+ +D+  +  D A+RL   ++ S+L+ RKL     +  A+P Y      P S+ 
Sbjct: 124 TLNLTNQLLDLVHEGYDLALRLGH-LKDSTLVARKLAQRVPYVCASPAYTARHGIPNSLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  +              W  T+D RP        LQ NS  +++   + G GI  
Sbjct: 183 ELTRHTCLV--------GNSDEWHFTLDGRPHSVRVRGLLQCNSGHALLDAALKGIGIIQ 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LPDY V D+     L+ ++ ++  P+  ++  YP     + K++   +++  +  D
Sbjct: 235 LPDYYVSDHLARGELIELLPELRAPAEGIWALYPHNRHLSPKVRLLVDYLAERLSD 290


>gi|260432167|ref|ZP_05786138.1| LysR substrate binding domain protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415995|gb|EEX09254.1| LysR substrate binding domain protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 301

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 133/293 (45%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFANVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L  FL  YPD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSGFLAAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + +  S+L  RKL        AAP Y++    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDVAVRIGE-LDDSTLRARKLTETVKRMVAAPSYIERFGRPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ +       +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNEHKLLHYSSQSSGNVWRLTAPSGEKRQVRT--AGWLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A LP Y+  D      +V  M  +      +Y  YP       K++AF +F+ 
Sbjct: 238 AYLPSYLYADALKAGKVVDAMPSLPDEVQGIYAVYPPGRFTQPKVRAFIDFLV 290


>gi|206561140|ref|YP_002231905.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198037182|emb|CAR53103.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 294

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 7/289 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S+I ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  +++  + EL +S   P G+LR++        LL   L +F+  YP+I++ +   
Sbjct: 69  CRRVIAEIDAAERELTQSVEAPRGRLRVSLPT--IGTLLLPVLADFMAAYPEIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R   P   S L  R L     H  A+P YL+    P +  +L +H
Sbjct: 127 DRIVDVIDEGFDVVLRTGHP-TDSRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLAQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +   A       E  +S +  N+  + + + + G GIA LP++ V
Sbjct: 186 RCLHYRFPSSGKLEIWPLRAPRAGTPPEVPVS-MVSNNAETRLCFALRGLGIACLPEFFV 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +D   +  L  +++D +      Y  +P       KL+AF +++    R
Sbjct: 245 RDTLADGRLRAVLDDHVASRTPFYVLWPSGRHPLPKLRAFVDYMAEHLR 293


>gi|21244433|ref|NP_644015.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21110097|gb|AAM38551.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 298

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 134/294 (45%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  VA    F+ AA+ L  S +S++RQ++ LE  +G +L  R  R ++LT 
Sbjct: 1   MDTLDAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  ++   ++   L+  +  +   +++P+G LR+   +  G   L   L  F   YP 
Sbjct: 61  AGSAYYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  D AIR+ +   +  LI R+L  + + A A+P YL     P 
Sbjct: 121 VELDLSLSDRLVDMVEEGFDVAIRITRQ-PAPMLIARQLGKVRILACASPAYLARAGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +          F    +    I       L+ N+   +    + G GI
Sbjct: 180 HPSDLAGHECLLYHYSPNGDDARFQGPQS---DIDVRLHGGLRANNGHVLNAAALAGQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + PD++ + +     LVRI+ +       ++  Y        K+++F +++  
Sbjct: 237 VIQPDFLAEPHIAAGRLVRILPEYAMGEIGIFAVYTSRSHLAPKVRSFIDYLVE 290


>gi|110678302|ref|YP_681309.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109454418|gb|ABG30623.1| transcriptional regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 302

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 137/293 (46%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F +V   G FT AA++L +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 2   MDRLTEMEAFAMVVDQGGFTDAAKKLGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L EFL  +PD
Sbjct: 62  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSEFLSDFPD 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P 
Sbjct: 122 ITVNMVLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPGYFEKYGRPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L+ H L+ + +     +      +   R +       L VN   S++   + G GI
Sbjct: 181 KIDDLNAHKLLHYSNQSSGNVWKITAPSGEKRQVRT--AGWLSVNDGQSLLNAAISGLGI 238

Query: 242 ALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A LP ++  +     LV   + D+      +Y  YP       K++AF +F+ 
Sbjct: 239 AYLPSFLYAEAMEKGLVEDAIPDLPMEMQGIYAVYPPGRFTQPKVRAFIDFLV 291


>gi|262275098|ref|ZP_06052909.1| transcriptional regulator LysR family [Grimontia hollisae CIP
           101886]
 gi|262221661|gb|EEY72975.1| transcriptional regulator LysR family [Grimontia hollisae CIP
           101886]
          Length = 312

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +  F  V  SGSFT AA +L +S S +SR+I  LE  +  +L YR  R +TLTE G 
Sbjct: 4   WSGVEEFVEVVNSGSFTAAARKLGVSTSHVSRRIDALECRLSTRLLYRTTRQITLTEVGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  K    +  + +   +P G L+I      G+  +   + +F+ ++P + +
Sbjct: 64  MYFEQCNDLIEKFAEVEALVTQMQTEPVGTLKITAPSVFGEKFIAPLVNDFIDVHPRLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +    N  +D+  D  D AIR    ++ S+L+ +KL    ++  A+P YL+    P++I 
Sbjct: 124 EFHFTNDVVDLVHDGYDLAIRTGD-LKDSTLMAKKLAPRKLYVCASPAYLREFGAPVNID 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN +         ++ +++         +PR      NS  +++   + G GIA L
Sbjct: 183 DLQNHNCLI------GLVDSWSFQDGGATVTIKPR-GRWHGNSGSAVLDAALHGLGIAQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V     +  LV ++ D   P   V+  YP     + K++ F +F+
Sbjct: 236 PDYYVSQKILSGELVEVLADYQAPDSAVWAVYPFNRNLSAKVRQFVDFL 284


>gi|259418579|ref|ZP_05742496.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259344801|gb|EEW56655.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 301

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 109/288 (37%), Positives = 173/288 (60%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDRLNLSQSAVSRQIRGLEESLNATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LET    +++S     G+LR+ TT   G   L   L +    YP++
Sbjct: 61  GELLFDATKTMAKRLETASARIRDSEEGVFGELRVTTTTGFGTLWLAPRLIKLYEQYPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+T+ M  YA+  Y+     P +
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMTVQMRLYASRGYIDKFGWPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+E+  H LI       +  +  +    V + +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 IEEICDHRLIC---QSLRSAQVGSAAVMVQKLMTHNPKSMLTVNNYFGVLQGVLQDLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P+LV+++ +  T    VY  YPE L+++ ++ AFR+F+
Sbjct: 237 VLPDYVTEDFPDLVQVLPNEDTNGVPVYLAYPEELRHSQRVSAFRDFV 284


>gi|77457661|ref|YP_347166.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381664|gb|ABA73177.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 301

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R F V      F  AA  + + +S +S+QI  LE  +G++L  R  R L LTE
Sbjct: 1   MDRIECMRAFVVTVGENGFAAAARAMDVPRSKVSKQIQALEEAIGVQLLQRTTRSLHLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++      EV   L+  +   ++   +  G LR+   +  G   L   +  F   +P+
Sbjct: 61  AGAEYFEAAREVIAALDEAEQRARDGVGELRGVLRVNAPMSFGLRRLGKLIPLFHEQHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++QL+L ++ +D      D  IR+   +  S++I R+L        A+P YL+    P 
Sbjct: 121 IELQLVLSDQQVDPVRGGFDVTIRIAS-LPDSTMIARQLAPAPRIMVASPAYLERAGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L  H  + +G L          L              L  N+   + Q    G GI
Sbjct: 180 TPQDLRSHQCLNYGYLQSGVSLQ---LCNGKETQRVNVTGPLHANNGDLLAQAAEAGMGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD+IV++      LV ++ +   P+ T+   Y  A +   K +AF  F+  + 
Sbjct: 237 ALLPDFIVEEALAAGRLVPVLCEWQAPAITINAVYSSARRVPQKTRAFIAFLVEQL 292


>gi|255263293|ref|ZP_05342635.1| LysR substrate binding domain protein [Thalassiobium sp. R2A62]
 gi|255105628|gb|EET48302.1| LysR substrate binding domain protein [Thalassiobium sp. R2A62]
          Length = 301

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L EFL  + D
Sbjct: 61  IGLAYYDRARRVLNDAGEADSLVTSMQSAPSGLLRISVATDFGVNHLSPTLGEFLNEFQD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D AIR+ + ++ S+L  RKL        A+P Y +    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAIRIGE-LEDSTLRARKLTETTRRMVASPEYFEQYGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ + +     +      +   R +       L VN   S++     G GI
Sbjct: 180 KIDDLNEHKLLHYSNQSNGAVWKLTAPSGEKRQVRT--AGWLTVNDGQSLLNAATSGLGI 237

Query: 242 ALLPDYIVKDNPN--LV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A LP ++  D     LV   + D+   +  +Y  YP       K++AF +F+ 
Sbjct: 238 AYLPSFLYADALEQGLVEEAIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFLV 290


>gi|16330422|ref|NP_441150.1| transcriptional regulator [Synechocystis sp. PCC 6803]
 gi|1652912|dbj|BAA17830.1| transcriptional regulator [Synechocystis sp. PCC 6803]
          Length = 302

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 133/291 (45%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F       SF+ AA +   +Q +IS+QI+ LE  +G++L  R    L LTE+G + +
Sbjct: 7   MQSFVRAIEMNSFSAAAREQQTTQPTISKQIAALEKYLGVRLITRSTTKLNLTEEGKQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   +   +  L E   K  G LR+  ++  G+  +   L  F+  YP ++I L+
Sbjct: 67  QYCQQILETVAEAEASL-EGKEKAVGTLRLGCSVLFGEMQIVPRLSLFIARYPQVKIDLM 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  +  D AIR+    Q  +LI  ++        A+  Y +   EP + +EL 
Sbjct: 126 MADYFVDMVQEGLDLAIRIGNH-QDKALISERIGITRRVTVASTSYFEKSGEPKTPEELT 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN I +  L       F+     +  I        Q NS +++    +   GIA+ P +
Sbjct: 185 RHNCIVYTSLSTINEWHFH---GKNGVIAINVKGSFQTNSSVAVRAAVLSDLGIAIAPIW 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  D+    NL  +++D     F +Y  Y  +     K+  F +F+  + +
Sbjct: 242 MFGDDIYQGNLKVVLQDYQPVPFPIYAVYRRSRFYPAKVHCFIDFLREEFK 292


>gi|194364208|ref|YP_002026818.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347012|gb|ACF50135.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 293

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + +RVF  V     F+ AA+ L LS + ++R ++ LE  +  +L +R  R ++ T  G
Sbjct: 3   TLEAMRVFVAVVERNGFSAAAQALDLSTAGVTRHVAALEKRLATRLLHRTTRRVSPTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +     +  + +  +  +   +++PSG LRI   +  G   L   L  +   +P ++
Sbjct: 63  AAYYAQCVRLLAEFDALEASIGAQALEPSGTLRINAPVSWGIARLGPLLASYRERFPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+  +  D AIR+ +   S +LI R+L    +   AAP YL     P + 
Sbjct: 123 LDLALSDRLVDMVEEGYDVAIRITRE-PSPTLIARRLGESRVSLCAAPSYLAARGAPKTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL  H  +++             L      +     S L  N+   + +  + G G+ L
Sbjct: 182 QELQAHACLSYSYWSAGDHWP---LQGPGGEVKVAVSSLLHANNGDVLREAAIAGMGVIL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            PD++++D   +  LVRI+ +       ++  Y        K+++F + +  
Sbjct: 239 QPDFLLEDALADGRLVRILPEWEASPIGIFAVYTSRSHLAPKVRSFIDHLVE 290


>gi|159044312|ref|YP_001533106.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912072|gb|ABV93505.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 300

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 170/296 (57%), Gaps = 4/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDSLHLSQSAVSRQIRALEESLNTILFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+ +  +L+     +++S  +  G+LR+ TTI  G   L   L      YPD+
Sbjct: 61  GELLFDATAAMTKRLDAASARIRDSEEEVFGQLRVTTTIGFGSLWLAPRLSRLYDRYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+L+ + +D+ M  AD AIR+++P Q+  LI++KL++I M  YA+P YL+    P  
Sbjct: 121 NVDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKKLMSIRMRLYASPSYLERNGRPTR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++E+  H +I       +       +  +           L VN+Y  ++Q  +   GI 
Sbjct: 180 MEEISSHRIICQNADSAQVSAGHTLVREI---FNHDVTHSLMVNNYFGVLQAVINDLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LPDY+V D P L +++ D  +    V+  YPE L+++ +++AFR+F+  +   ++
Sbjct: 237 VLPDYLVTDFPQLEQVIPDFESSDVPVFLAYPEELRHSKRIEAFRDFVTEEVIAYR 292


>gi|260424396|ref|YP_003212597.1| hypothetical protein Ctu_1p00210 [Cronobacter turicensis z3032]
 gi|260219204|emb|CBA34558.1| hypothetical protein Ctu_1p00210 [Cronobacter turicensis z3032]
          Length = 313

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 10/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L  F   A + SFT AA  L +S S++ + ++ LE ++G++LF R  R ++LT 
Sbjct: 9   MDSFTALASFVRTAETLSFTQAARVLGISASAVGKNVARLEQKLGVRLFNRSTRSVSLTA 68

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+ L         +L   + EL  ++  PSG+LRI+  + +G +LL   L  F   YP+
Sbjct: 69  EGATLLARCRPALEQLREAEAELTSATDTPSGRLRISLPV-IGYHLLMPFLPAFAARYPE 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L   ++ +++  +  D AIR  + +  S L    L        A+P YL     P 
Sbjct: 128 IDIELDFSDRLVNLVDEGFDVAIRSGE-MADSRLTATTLGHFRFVLCASPVYLAEHGAPQ 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L KH  I F    P       W  T     G P  S L VN+  ++++  V G GI
Sbjct: 187 TPDALKKHRCILF--RFPSTGLIQPWELTGLTMTGAP--SALTVNNIEAMIRAAVAGMGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +PD+IV        L  +M             +  +   + +++ F +F+  
Sbjct: 243 CYVPDFIVNSLLTRGELQEVMPGCCERRGAFSALWQTSRYLSPRIRCFVDFLKA 296


>gi|255263589|ref|ZP_05342931.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
 gi|255105924|gb|EET48598.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
          Length = 303

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 110/288 (38%), Positives = 169/288 (58%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA E LHLSQS++SRQ+  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGETLHLSQSAVSRQVRALEESLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+ T   +++S  +  G+LR+ TTI  G   L   L      YPD+
Sbjct: 61  GELLFDATRSMNKRLDATAARIRDSEEEVFGELRVTTTIGFGSLWLAPRLSTLYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+++ M  YA+  YL     P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMSVRMQLYASREYLVQNPAPAD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +H LI      P+  +       V   +     + L VN+Y  ++Q      GI 
Sbjct: 180 LERLGEHRLIC---QNPRSAQVSASSTLVQELLTHDVPNLLTVNNYYGVLQAVRSNLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY  +D P+LVR++ DV +    V+  YPE L+ + +++AFR+F+
Sbjct: 237 VLPDYTTEDFPDLVRVLPDVESSEVPVFLAYPEELRQSKRIQAFRDFV 284


>gi|221199169|ref|ZP_03572213.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206634|ref|ZP_03579646.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221173289|gb|EEE05724.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180454|gb|EEE12857.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 294

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 139/290 (47%), Gaps = 9/290 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGISASAVGKRIARLEARLNVRLFHRSTRSVTLTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  +++  + EL +S   P G+LR++        L+   L  F+  YP+I++ L   
Sbjct: 69  CRRVIAEIDAAERELTQSVEAPRGRLRVSLPT--IGTLMLPVLAGFMSAYPEIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R L     H  A+P YL+    P +  +L +H
Sbjct: 127 DRLVDVVDEGFDAVVRTGRP-ADSRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLARH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +    P   +   W   V R    P +   +  N+  + + + + G GIA LP++ 
Sbjct: 186 RCLHY--RFPATGKLEIWPLPVPRSHTPPDVPVSMVSNNAETRLCFALRGLGIACLPEFF 243

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V+   D   L  +++D +     VY  +P     T KL+AF +++    +
Sbjct: 244 VREPIDAGTLRTVLDDYVASRTPVYVLWPSGRHPTPKLRAFVDYLVEHLQ 293


>gi|254520898|ref|ZP_05132953.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219718489|gb|EED37014.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 293

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + +RVF  V     F+ AA+ L LS + ++RQ++ LE  +  +L +R  R ++ T  G
Sbjct: 3   TLEAMRVFVAVVERNGFSAAAQALDLSTAGVTRQVAALEKRLSTRLLHRTTRRVSPTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +     +  + +  +  +   +++PSG LRI   +  G   L   L  +   +P ++
Sbjct: 63  AAYYAQCVRLLAEFDALEASIGAQALEPSGTLRINAPVSWGIARLGPLLASYRERFPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+  +  D AIR+ +   S +LI R+L    +   AAP YL     P + 
Sbjct: 123 LDLALSDRLVDMVEEGYDVAIRITRE-PSPALIARRLGQSRVSLCAAPSYLAARGTPQTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL  H  +++             L      +     S L  N+   + +  + G G+ L
Sbjct: 182 QELPAHACLSYSYWAAGDHWP---LQGPGGEVKVAVSSLLHANNGDVLREAAIAGMGVIL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            PD++++D   N  LVR++ +       ++  Y        K+++F + +   
Sbjct: 239 QPDFLLEDALANGRLVRVLPEWEASPIGIFAVYTSRSHLAPKVRSFIDHLVEA 291


>gi|167565098|ref|ZP_02358014.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167575012|ref|ZP_02367886.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 296

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 138/296 (46%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +TE 
Sbjct: 1   MQFDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTEL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + H   + +  ++  T+  +        G L+I+  +  G   L   + EFL+ +P +
Sbjct: 61  GQEFHARATRILAEIADTEEAMSARRRDLRGTLKISAPMSFGITHLSPLIAEFLVQHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y ++   P +
Sbjct: 121 RLHLELSDRHVDLIGEGFDLALRIGA-LPDSTLIARRLGELRMVACCSPAYRRSRGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  + +G       E                   L  N+   I    V G GIA
Sbjct: 180 PADLHRHACLLYGQEGRAGWE----FVIDGARRTFEVQGALLANNGEVIRDAAVAGLGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LLP +IV    D   LV ++E        V   YP+  ++    + F  FI  + R
Sbjct: 236 LLPHFIVAPPLDAGTLVTVLEPFAQSPLPVNAVYPQHRQDMAACRVFLGFIEERLR 291


>gi|126726356|ref|ZP_01742197.1| Transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126704219|gb|EBA03311.1| Transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 300

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 110/296 (37%), Positives = 173/296 (58%), Gaps = 4/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLRVF+ VA +GS THA + LHLSQS++SRQ+  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRVFHAVADAGSLTHAGDTLHLSQSAVSRQVRALEESLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T+ +  +L++    +++S  +  G+LR+ TTI  G   L   L      YPD+
Sbjct: 61  GELLFDATTAMNKRLDSASARIRDSEEEVFGELRVTTTIGFGSLWLAPRLSRLYDQYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+L+ + +D+ M  AD AIR+++P Q+  L++++LV IHM  +A   YL     P  
Sbjct: 121 KVDLMLEERVLDLPMREADVAIRMKEPSQAD-LVRKRLVNIHMRLFATQEYLDKNGVPEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H LI      P   +       V   I E  +  L VN+Y  ++Q  +   G+ 
Sbjct: 180 MEDLFSHRLIC---QNPNSTQVQAGATLVQSLIAENIVPFLTVNNYFGVLQSVLNHLGVG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LP Y+    P+LVR++ DV +    V+  YPE L+++ +++AFR+F+  + RD +
Sbjct: 237 VLPGYVEASFPSLVRVLPDVESKEVPVFLAYPEELRHSKRVQAFRDFVQDEIRDER 292


>gi|13472475|ref|NP_104042.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023221|dbj|BAB49828.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 307

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 140/296 (47%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A  GSF  A   L +S S++ + ++ LE E+G++L  R  R + LTE
Sbjct: 1   MDRLSGLLAFARTAELGSFIAAGRALGISASAVGKSVARLEQELGVRLLQRSTRRVGLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +     +   ++  +  L  +   P G+LR++T I +  +LL   L EF+  YP+
Sbjct: 61  EGRLFNERVRRILDDIDDAEAMLSRTRETPHGRLRVSTPI-VTYHLLLPVLSEFMSRYPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  +++ +D+  +  D AIR  + +  S L+ R +    M   AAP YL+    P 
Sbjct: 120 IELDIDFNDRIVDVIEEGIDVAIRSGE-LPDSRLVSRPVGPFRMLLCAAPSYLERHGTPG 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I F  L    + ++ ++     P      S L  N+  ++    + G GI
Sbjct: 179 EPADLIRHFGINFRFLNSGRLLEWPFITGSAEPQIR---SKLTCNNMEALKGATIAGLGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A +PD++V++   +  L  +++D I         +P     + K++ F +F+  + 
Sbjct: 236 ACMPDFLVREALLDGRLRTVLDDHIDGRGQFRMLWPSNRHLSPKVRVFVDFLPERL 291


>gi|170692906|ref|ZP_02884067.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141904|gb|EDT10071.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 334

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 144/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q  + KP GKLRI     +G+ L+   L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPQLCEFHKRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC +R+   +Q SSL+ R++      + A+P Y++    P 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVVRVGA-LQDSSLVARRIGLFEGVSCASPEYIERAGMPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S+++L+ H  + +     +     +W   VD    E ++ S + VN   + +   + G G
Sbjct: 180 SLEDLENHKAVNY--FSSRTGRTLDWAFLVDGKEVEVKMKSIVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V  +     LV ++ ++      +   YP +   + K++ F ++I  
Sbjct: 238 LIQPALFMVLPHLRAGQLVEVLPEMKPLPMPISAVYPHSRHLSPKVRVFVDWIAE 292


>gi|269104162|ref|ZP_06156858.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268160802|gb|EEZ39299.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 300

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 137/289 (47%), Gaps = 8/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY +   GSF+ AAEQ  +++S IS++IS LE ++G++L YR  R LT TE G  
Sbjct: 5   DDLILFYHLIEHGSFSKAAEQAGITKSVISKRISKLEADLGVQLIYRTTRKLTPTEAGII 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    +VYH ++     +       SG ++I      G+ +L   + EF   YPDI+I+
Sbjct: 65  FYSHARDVYHSVQNAMNAMSGLGESISGTIKITVPTISGEMILPQAISEFSQQYPDIKIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +DI     D AIR R  +  SSLI RKL+  H     +P YL+    P    E
Sbjct: 125 MDLDNRFVDIIDKGFDLAIRTRA-LPDSSLIARKLINAHWIICVSPAYLRKYGLPQHTSE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   WL   ++ I    +      N+  ++ Q  +LG GI  +
Sbjct: 184 LTSHNCLGYSYQETGASE---WLINDNQGIHTMTVKGNFTTNNASALRQAALLGQGIIYV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V  +    +L  I          +Y  YP   +   K+K F   +
Sbjct: 241 PKILVSADLANGDLQEIFSGQAAKHLGIYAVYPYTKQQAIKIKLFIEHL 289


>gi|126730859|ref|ZP_01746668.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
 gi|126708575|gb|EBA07632.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
          Length = 301

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L EFL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGEFLAEFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPSYFQKYGRPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ + +     +      +   R +       L VN   S++  C+ G GI
Sbjct: 180 RIDDLNEHKLLHYSNQASGNVWKLTAPSGEKRQVRT--AGWLTVNDGQSLLNACIAGLGI 237

Query: 242 ALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP Y+  D     LV   + D+      VY  YP       K++AF +F+     +
Sbjct: 238 AYLPSYLYHDAMEQGLVEDAIPDLPMEMQGVYAVYPPGRFTQPKVRAFIDFLVHAFAE 295


>gi|307256719|ref|ZP_07538498.1| hypothetical protein appser10_7220 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864767|gb|EFM96671.1| hypothetical protein appser10_7220 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 298

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 140/292 (47%), Gaps = 11/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE
Sbjct: 1   MDKLNAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+
Sbjct: 61  AGLLYYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P 
Sbjct: 121 IQLNIEFSDRRVDVVAEGYDLVLRIG-TLEDSSIVAKRIARSELVLIASPDYLAKQGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++++L +H  + +     +  + + ++    +   +P    +  N+  +++Q    G GI
Sbjct: 180 NLEQLTEHTCLIY-----ENHQQWQFMNGEQKVKIKPNAHVI-SNNGYALLQMTKAGQGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++VK+     NLV I+      S  +   YP     + K+K F  F+
Sbjct: 234 VNLPLFLVKEEISAGNLVEILPQYKQHSIDISVLYPHRRYLSPKVKVFIEFL 285


>gi|71280356|ref|YP_269246.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71146096|gb|AAZ26569.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 301

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 136/295 (46%), Gaps = 11/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L++F  +A + + + A   L LS +  S  I+ LE  +GI+L +R  R ++LTE+
Sbjct: 1   MNIEHLKLFLRLAATNNISQAGNDLGLSPAVASAHINKLEQGLGIRLVHRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        EV   +ET +  +      P G+LRI      G+  +   +K FL LYPDI
Sbjct: 61  GETFLPHAEEVISSIETARASVGVGQASPKGRLRITAPASFGRMHIVSAMKGFLSLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ + L +  +D+     D AIR    ++ S+LI RKL         +P YLK   EP S
Sbjct: 121 QVDIRLTDNIVDLVEGGFDIAIR-DAELKDSTLIARKLSPDKRIICVSPDYLKKFGEPNS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H  +    L     +      T    I        + ++  ++   CV G GIA
Sbjct: 180 PQDLRDHQCVILNGLETWVFD------TPAGHINIKPKGNFRTDNGEAMRDACVDGLGIA 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +   + V     +  LV+I+++    S   ++  YP +     K++AF +++  +
Sbjct: 234 MNATWSVYRHLQSGELVQILKEYPLISNAAIWAVYPSSRLLAPKVRAFIDYLSEQ 288


>gi|126726181|ref|ZP_01742023.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126705385|gb|EBA04476.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 299

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLKEMEAFATVVDQGGFTDAAKKMGISKSAVSKYLSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LR++   D G N +   + +FL  YPD
Sbjct: 61  IGLVYYDRACRVLNDAGEADSLVTSMQSAPSGPLRVSVATDFGVNHMSPIIGDFLSEYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I   ++L+N+ +++  +  D AIR+ + ++ SSL  RK+        A+P Y +    P 
Sbjct: 121 ITFNMVLNNRFVELISEGFDMAIRVGE-MEDSSLRSRKIAVTRKRMIASPEYFEKYGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L+ H L+ + +     +  +   A             L VN   S++     G GI
Sbjct: 180 KIDDLNDHMLLHYSNQSNGNV--WKLTAPSGEKRHVRSAGWLTVNDGQSLLNAAKSGLGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A LP ++  D      +V  M D+   +  +Y  YP       K++A  +F+  
Sbjct: 238 AYLPGFLYSDALARGEVVEAMPDLPEETVGIYAVYPPGRFTQPKVRALIDFLVA 291


>gi|70728581|ref|YP_258330.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342880|gb|AAY90486.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 299

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 146/305 (47%), Gaps = 15/305 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ + W+ +  F  VA    FT AAE+L +S S ISRQ++ LE  +  +L YR  R +TL
Sbjct: 1   MNDNRWEGIDEFVAVAECSQFTAAAERLGVSSSHISRQVARLEERLQTRLLYRSTRRVTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G    +    +    E     + + + +P G LR+   +  G+  +   +  F+ LY
Sbjct: 61  TEAGQTFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMSLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++ + L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P YL+    
Sbjct: 121 PQLRVDIELSNRPLDLVHEGLDLAIRLGR-LQDSRLVATRLAPRRMYLCASPSYLERYGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+ EL +HN +           D   L    R   +      + NS  +++   + G 
Sbjct: 180 PHSLSELSRHNCLI-------GSSDIWQLELDGREFSQRVQGNWRCNSGQAVLDAALQGV 232

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLK 293
           G+  LPDY V ++     L+ ++E    P+  V+  YP+    + K++   +++     +
Sbjct: 233 GLCQLPDYYVLEHLQNGTLISLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKQGLAQ 292

Query: 294 ARDWK 298
             +++
Sbjct: 293 RPEYR 297


>gi|187919244|ref|YP_001888275.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717682|gb|ACD18905.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 334

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 144/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q  + KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y++    P 
Sbjct: 121 IDLQLGLTDRPVDLLQEGVDCVVRVGA-LQDSSLVARRIGLFEGVTCAAPDYIERAGMPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S+++L+ H  + +     +     +W   VD    E ++ S + VN   + +   + G G
Sbjct: 180 SLEDLENHKAVNY--FSSRTGRTLDWAFLVDGKEIEVKMKSIVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     +  LV ++ ++      +   YP +   + K++ F ++I  
Sbjct: 238 LIQPALFMVLPHLRSGQLVEVLPELKPLPMPISAVYPHSRHLSPKVRVFVDWIAE 292


>gi|94501938|ref|ZP_01308447.1| probable transcriptional regulator, LysR family protein
           [Oceanobacter sp. RED65]
 gi|94425932|gb|EAT10931.1| probable transcriptional regulator, LysR family protein
           [Oceanobacter sp. RED65]
          Length = 290

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 147/302 (48%), Gaps = 20/302 (6%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R F  VA  GSFT AA++L  S   IS+ +  LE+ + I+L  R  R + LTE
Sbjct: 1   MDTLDTIRAFIAVAAEGSFTKAADRLDTSPQLISKYMGQLESRLNIRLLNRTTRKVQLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+       ++ ++ +  + E+ +    P G LRI+  +      +   L+EF  LYPD
Sbjct: 61  AGAAYLEQAQDLINRFDAMENEIGDLQTLPQGNLRISAPVSFANLHMGALLREFQSLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L L+++ +DI  +  D A+R+ + +Q SSLI + +  I +   A+  YL+    P 
Sbjct: 121 ISIDLQLNDRKVDIVEEGYDVALRIGQ-LQDSSLIAKYIAPIQLRICASKDYLQKNGIPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  +++              A  ++ I +   + +  N+   ++ + + GSGI
Sbjct: 180 TEADLKQHTYLSYSY------------AEQNQSIFKNAKTVITCNNGDILVDHAIAGSGI 227

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKAR 295
           A+ P +I  +     +LV I+E+    +  +Y  Y        K++ F +FI   F +A 
Sbjct: 228 AMQPTFICGEALKRGDLVSILENYTPKALGLYAMYAHRKFIPLKVRCFLDFIGGYFGEAP 287

Query: 296 DW 297
            W
Sbjct: 288 YW 289


>gi|170694019|ref|ZP_02885175.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141091|gb|EDT09263.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 366

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDVTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGTPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       +  +     + +  N+   + Q+ +LG GI
Sbjct: 181 RPEHLLEHPCLSLPS---EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|152972380|ref|YP_001337526.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150957229|gb|ABR79259.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 299

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 134/293 (45%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AAE L L + S+SRQI  LE+ +G++L +R  R + LT+
Sbjct: 1   MDKIHAMQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+      Q      SG+LR+   +   + ++  +L  FL  YP 
Sbjct: 61  DGMVYYERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKMVIPHLPTFLQQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+   ++ S LI R L  +     A+P YL     P 
Sbjct: 121 IELELSSSDRQVDVIREGFDCVVRVGA-LKDSGLIARPLGKLTQINCASPDYLARFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+++L  H LI +   +      F     +D  +   +    L VNS  +    C+ G G
Sbjct: 180 SLEDLADHALIHYASTLGVRPPGFE--VMIDGAVRWVKTGGILTVNSTETYQAACIAGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +P   V++     +L+ I+         V   YP     + ++  F  ++
Sbjct: 238 IIQVPRTGVREALRAGDLIEILPQYRAEPLPVSLIYPHRRNLSRRVNLFMEWL 290


>gi|21233096|ref|NP_639013.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770036|ref|YP_244798.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114950|gb|AAM42937.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575368|gb|AAY50778.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 311

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 135/296 (45%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D +RVF  VA    F+ AA+ L  S ++I+RQ++ LE  +G +L  R  R ++LT  G
Sbjct: 3   TLDAMRVFVAVAERSGFSAAADALDRSTANITRQVAALEQRLGTRLLNRTTRRVSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++   ++   L+  +  +   ++ PSG LR+   +  G   L   L  F   +P ++
Sbjct: 63  TAYYQRCLQLLADLDDLEATVGAQALAPSGLLRVNAPVSFGIVQLAALLPGFRARFPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+  +  D A+R+ +   + +LI R+L T+ +   AAP YL     P   
Sbjct: 123 LDLSLSDRLVDMVEEGFDVALRITRQ-PAPTLIARQLGTVRLVPCAAPAYLARAGTPQHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +          F+     D  I       L+ N+   +    V G G+ +
Sbjct: 182 ADLAGHECLLYHYAPTGDDVRFH---GPDGDIDVRLRGGLRANNGHVLSAAAVAGQGVVI 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            PD++  ++     LVRI+ D       +Y  Y        K+++F +++     D
Sbjct: 239 QPDFLADEHIAAGRLVRILPDYHLADIGIYAVYTSRSHLAPKVRSFIDYLVEHIGD 294


>gi|91781426|ref|YP_556632.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91685380|gb|ABE28580.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 367

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDVTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       +  +     + +  N+   + Q+ +LG GI
Sbjct: 181 RPEHLLEHPCLSLPS---EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|146292916|ref|YP_001183340.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145564606|gb|ABP75541.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 297

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 144/288 (50%), Gaps = 7/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA   SF  A  +L +S S++ + +  LE ++G++LF R  R +TLT +G      
Sbjct: 6   VFVQVAEQRSFVGAGRELGVSASAVGKSVVRLEEKLGVRLFNRSTRSVTLTAEGLLFLER 65

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  Q+EL +++  P G+LR++    L  +L+   L EF+  YPDI++ L   
Sbjct: 66  SRRILAEIEAAQLELSQATGAPRGRLRVSLP--LVSSLVLPVLGEFMREYPDIELDLDFT 123

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P Q S L  R+L    M   A+P YL     P +  +L +H
Sbjct: 124 DRMVDVIEEGFDAVVRTGEP-QDSRLSARRLGNFQMRLVASPDYLALRGTPQTPADLLQH 182

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + +       +E +     +D P  +   S +  N+  + + + + G GIA LPD+ +
Sbjct: 183 SCLHYRFPNSGKLETWALKQPLDEPKLQLPTS-MICNNIETRLCFALQGLGIAYLPDFAI 241

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +   N  L  I+ D +  + T Y  +P +     K++A  +F+  K 
Sbjct: 242 HEPLANGRLRPILADYVQRTGTFYILWPASKHPLPKVRALVDFLCAKL 289


>gi|296156417|ref|ZP_06839255.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893016|gb|EFG72796.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 334

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 143/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q  + KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y++    P 
Sbjct: 121 IDLQLGLTDRPVDLLQEGVDCVVRVGA-LQDSSLVARRIGLFEGVTCAAPDYIERAGMPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S+++L+ H  + +     +     +W   VD    E ++   + VN   + +   + G G
Sbjct: 180 SLEDLENHKAVNY--FSSRTGRTLDWAFMVDGKEIEVKMKGIVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     +  LV ++ ++      +   YP +   + K++ F ++I  
Sbjct: 238 LIQPALFMVLPHLRSGQLVEVLPELKPLPMPISAVYPHSRHLSPKVRVFVDWIAE 292


>gi|148549368|ref|YP_001269470.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513426|gb|ABQ80286.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 298

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W+ +  F  VA SG FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TL+
Sbjct: 1   MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEDRLQTRLLYRSTRRVTLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP
Sbjct: 61  EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + L N  +D+  +  D AIRL + +  S L+  +L    M+  A+P YL++   P
Sbjct: 121 QLRVDVELSNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLEHYGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL +HN +           D   L    R I +      + NS  +++   + G G
Sbjct: 180 HSLSELARHNCLV-------GSSDLWALQQDGREISQRVQGNWRCNSGQAVLDAALQGIG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           +  LPDY V ++     LV ++E    P+  V+  YP+    + K++   +++       
Sbjct: 233 LCQLPDYYVLEHLNSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYLKEGLAGL 292

Query: 295 RDWKF 299
            +++F
Sbjct: 293 PEYRF 297


>gi|117619725|ref|YP_854742.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561132|gb|ABK38080.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 301

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 141/296 (47%), Gaps = 13/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA  G FT AA +L +S + +SRQ++ LE  +  KL  R  R + LTE G 
Sbjct: 4   WEGICEFVSVAEQGGFTPAARKLGVSVAQVSRQVAQLEDRLQAKLLLRTTRQVRLTELGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R   ++   L   ++ +      P G LRI   +  G++ +   + +F++ +P +++
Sbjct: 64  IYYRHCRQLLDNLYEAELAVGRHQAVPQGTLRITAPVSYGESRIAPLVNDFMVRFPQLEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L N+ +D+  +  D A+RL   ++ SSL+ RKL     +  A+P Y      P S+ 
Sbjct: 124 TLNLTNQLLDLVHEGYDLALRLGH-LKDSSLVARKLAQRVPYVCASPAYTARHGMPNSLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  +              W  T+D RP        L  NS  +++   + G GI  
Sbjct: 183 ELTRHTCLV--------GNSDEWHFTLDGRPHSVRVHGLLHCNSGHALLDAALKGIGIIQ 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LPDY V D+     L+ ++ ++  P+  ++  YP     + K++   +++  +  D
Sbjct: 235 LPDYYVSDHLAQGELIELLPELRAPAEGIWALYPHNRHLSPKVRLLVDYLAERLSD 290


>gi|85704667|ref|ZP_01035769.1| hypothetical protein ROS217_06294 [Roseovarius sp. 217]
 gi|85671075|gb|EAQ25934.1| hypothetical protein ROS217_06294 [Roseovarius sp. 217]
          Length = 302

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G+FT AAE L + +++++  I  LE  +  KL  R  R + +T 
Sbjct: 1   MDQLSAMRAFVRVVETGNFTRAAESLRMPKATLTNLIQRLEKHLQTKLLNRTTRLVIVTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    ++  +++     L     +PSG+LR+  +       +  +L +F   YPD
Sbjct: 61  DGAFYYERAVQLVSEIDELDNSLTHRQTRPSGRLRVEMSGAFADWYVIPSLADFYQSYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +D   +  DCA+R  +P +  SLI R++  I +   AAP YL+N   P 
Sbjct: 121 IQLDIGVTDRTVDYVRENVDCALRAGEP-KDQSLIARRVSEIGLITCAAPSYLENHGTPS 179

Query: 182 SIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +L+  H  + +       ++ F   A  D  I       + VN   S ++  + G G
Sbjct: 180 TPAQLETDHLCVNYFIAQTGSLKPFV-FAQDDSEISINSKHRIAVNDVRSYLRATISGQG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           I  LPD++ +D      LV ++ D    +  VY  YP     + K++ F +++ 
Sbjct: 239 IGQLPDFMAEDEIAKGALVPVLSDWKAKTVPVYVVYPPNRHLSNKVRVFVDWLI 292


>gi|303250394|ref|ZP_07336592.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252252|ref|ZP_07534149.1| hypothetical protein appser6_7700 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650720|gb|EFL80878.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860174|gb|EFM92190.1| hypothetical protein appser6_7700 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 298

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 140/292 (47%), Gaps = 11/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE
Sbjct: 1   MDKLNAINLFCRVIETQSFTQAAQLEQVSLAMASKLIAQLEEHLNVRLLHRTTRKITPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+
Sbjct: 61  AGLLYYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P 
Sbjct: 121 IQLNIEFSDRRVDVVAEGYDLVLRIG-TLEDSSIVAKRIARSELVLIASPDYLAKQGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++++L +H  + +     +  + + ++    +   +P    +  N+  +++Q    G GI
Sbjct: 180 NLEQLTEHTCLIY-----ENHQQWQFMNGEQKVKIKPNAHVI-SNNGYALLQMTKAGQGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++VK+     NLV I+      S  +   YP     + K+K F  F+
Sbjct: 234 VNLPLFLVKEEISAGNLVEILPQYKQHSIDISVLYPHRRYLSPKVKVFIEFL 285


>gi|319795354|ref|YP_004156994.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597817|gb|ADU38883.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 306

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 140/291 (48%), Gaps = 11/291 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L  F   A   SF  A   L +S S++ + ++ LE ++G++LF R  R + LTE
Sbjct: 1   MDSFSGLESFVRAADLLSFAKAGRLLGISASAVGKNVARLEQQLGLRLFNRTTRHVRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  H     +  +L+  +  +Q++   P G+LR++    +G   L   L  F   +P+
Sbjct: 61  EGAMFHERCRRILDELDDARAMMQDAVAAPRGRLRVSLP-TIGYRFLLPILPAFKARFPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L  +++ +D+  +  D AIR  + +  S L+ R+L   +    A+P YL     P 
Sbjct: 120 IELDLDFNDRLVDVIAEGVDVAIRSGE-LGDSQLVARRLGPFNFVLVASPAYLAEHGVPQ 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ + +  +    +ED++       P   P    L  N+  +++   V G G+
Sbjct: 179 VPADLAGHSCLRYKFVTGGKIEDWDL---PGLPTQLP--PGLLCNNMEAMLGAAVAGLGV 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           A +PD++ +D+     L R++E  +         +  + + + K++AF +F
Sbjct: 234 AYMPDFLARDSLCRGELQRVLETHLVRQGQFSALWSSSRQLSPKVRAFVDF 284


>gi|170732678|ref|YP_001764625.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169815920|gb|ACA90503.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 307

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 134/306 (43%), Gaps = 13/306 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W ++  F  VA  GS + AAE+L +S ++ SR ++ LE  +G +L  R  R L LT+
Sbjct: 1   MDKWTQIEFFVQVAELGSLSKAAERLGMSSAAASRCLTALEERLGARLVERTTRRLWLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + HR    +  +L      + E+SV P+G LR+  ++      +   L EF   YP+
Sbjct: 61  AGHEYHRRCVAILTELSEADAAVNEASVNPAGTLRVTASVSFASIYIAPALPEFHRRYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +Q++  N+  D      D AIR R+    S +  RKL        A+P YL     P 
Sbjct: 121 LNVQIVAANRYPDFIEAGIDVAIRTREHEADSGITVRKLAETRRVLAASPGYLAKHGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L +H L+ +       +  F   A   +       S L  N    I    + G GI
Sbjct: 181 TPDALGEHRLLVYNLANDPYVLHFRHGA---KKQSVTIKSVLDANEGQVIRVAALAGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----- 293
            + P YI+ D+     LV ++ D   P+ TV   Y        K++ F  F+  +     
Sbjct: 238 LIQPLYIIHDDIVAGKLVPVLTDWQLPALTVNIAYQSRRHQPAKIRVFTEFLIERFERLG 297

Query: 294 -ARDWK 298
            AR WK
Sbjct: 298 LARKWK 303


>gi|91779249|ref|YP_554457.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691909|gb|ABE35107.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 334

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 143/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q  + KP GKLRI     +G+ L+  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPSLSEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y++    P 
Sbjct: 121 IDLQLGLTDRPVDLLQEGVDCVVRVGA-LQDSSLVARRIGLFEGVTCAAPDYIERAGMPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S+++L+ H  + +     +     +W   VD    E ++   + VN   + +   + G G
Sbjct: 180 SLEDLENHKAVNY--FSSRTGRTLDWAFMVDGKEIEVKMKGIVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     +  LV ++ ++      +   YP +   + K++ F ++I  
Sbjct: 238 LIQPALFMVLPHLRSGQLVEVLPELKPLPMPISAVYPHSRHLSPKVRVFVDWIAE 292


>gi|170719969|ref|YP_001747657.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757972|gb|ACA71288.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 301

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 88/292 (30%), Positives = 145/292 (49%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V   GSF+ AA Q  LS +++SRQ++ LE  +G +L  R  R L LTE
Sbjct: 1   MDQLSAMQTFRRVVDLGSFSAAASQAGLSHTALSRQVTQLERHLGTQLLARTTRRLHLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +R   ++  +++   +EL E   +PSG LR+      G+  L   L EF+  YP 
Sbjct: 61  AGALFYRHCVQILEQMQAMTLELSEHQKQPSGTLRLGVATAFGELELGRWLPEFVERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L   ++ ID+  +  D  +R+   +  SSL+ R+L T  +   AAP YL+    P 
Sbjct: 121 LQIELHCSDRFIDLLEEEIDICLRVTDHLPDSSLVARRLATSEVLLVAAPRYLERHGTPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H L+ +  L+          A   R I  PR   +  NS +++    + G GI
Sbjct: 181 SPDDLASHPLLGYSQLLHPQRLLLANEAGEQRQILMPR--RVSANSPMALRAAAIGGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A    +IV+D   +  LV ++ D    +  +Y  YP++     K++A  +F+
Sbjct: 239 ASFDCFIVQDALADGRLVPVLADWRLAARGLYAVYPQSRYLAPKVRALLDFV 290


>gi|260550884|ref|ZP_05825090.1| LysR family transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406011|gb|EEW99497.1| LysR family transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 345

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 146/298 (48%), Gaps = 9/298 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D +  +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++L
Sbjct: 1   MRVDLFHAMRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G+  +  T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   Y
Sbjct: 61  TPDGAVYYDRTARILADVSDIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI + + L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   E
Sbjct: 121 PDIDLVIGLNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGE 179

Query: 180 PLSIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVL 237
           P SI++L   H  I F     +   +F+W   VD  I    +   + VN   + +   + 
Sbjct: 180 PTSIEDLQKNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQ 237

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI   P Y++    ++  L  ++         +   Y +    + K+K F +++  
Sbjct: 238 GFGIIQGPRYMLTNHLESGLLKEVLPQWTPAPMPISAVYLQNRHLSLKVKVFVDWVAE 295


>gi|296161358|ref|ZP_06844165.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295888344|gb|EFG68155.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 367

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDVTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       +  +     + +  N+   + Q+ +LG GI
Sbjct: 181 RPEHLLEHPCLSLPS---EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|170733950|ref|YP_001765897.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817192|gb|ACA91775.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 294

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 7/289 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S+I ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  +++  + EL +S   P G+LR++        LL   L +F+  YP+I++ +   
Sbjct: 69  CRRVIAEIDAAERELTQSVEAPRGRLRVSLPT--IGTLLLPVLADFMAAYPEIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R   P   S L  R L     H  A+P YL+    P +  +L +H
Sbjct: 127 DRIVDVIDEGFDVVLRTGHP-TDSRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLAQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +   A       E  +S +  N+  + + + + G GIA LP++ V
Sbjct: 186 RCLHYRFPSSGKLEIWPLRAPRVGTPPEVPVS-MVSNNAETRLCFALRGLGIACLPEFFV 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +D   +  L  +++D +      Y  +P       KL+AF +++    R
Sbjct: 245 RDTLADGRLRAVLDDHVASRTPFYVLWPSGRHPLPKLRAFVDYMAEHLR 293


>gi|26990516|ref|NP_745941.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985492|gb|AAN69405.1|AE016576_15 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 294

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 139/293 (47%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  +GSFT AA++L +S+ S+SR++  LE  +G++L  R  R L  T  G 
Sbjct: 4   YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++  + ++   +    G LR++  +      L   L EFL L+P + +
Sbjct: 64  HYYQSALRLLGEVQQVEHDISGQAQVLRGTLRLSAPLSFAMAHLGCLLTEFLQLHPQVDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++ ++     A+P YL+    P    
Sbjct: 124 EVDLSDRAVDLIGEGYDLALRIGA-LEDSSLIARRIASVERVYCASPAYLQARGVPGKPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ + +G       +         +         ++ N+   +    + G G+  L
Sbjct: 183 ELAAHDCLPYGHSRQVQWQ----FHKGGKTQAIQVTGRMRANNGELLRGAAIAGMGVTYL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV        LV ++++   P+  +   YP+  +    ++ F +F+  + 
Sbjct: 239 PTFIVGQALAEGQLVTVLDEWRPPALQLSAVYPQHRQVARPVQGFVSFLRARL 291


>gi|114763753|ref|ZP_01443147.1| transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114543754|gb|EAU46767.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           HTCC2601]
          Length = 301

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 140/298 (46%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L +FL  +P+
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLAEFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPAYFEKFGRPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ + +     +      +   R +       L VN   S++  C+ G GI
Sbjct: 180 RIDDLNEHKLLHYSNQSSGNVWKVTAPSGEKRQVRT--AGWLSVNDGQSLLNACIAGLGI 237

Query: 242 ALLPDYIVKDNPN--LVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP Y+  D     LV   + D+   +  +Y  YP       K++AF +F+     D
Sbjct: 238 AYLPSYLYADAMKQGLVEDAIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFLVHAFAD 295


>gi|167838727|ref|ZP_02465586.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 334

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 144/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTKAAETLGLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q ++ KP GKLR+     +G+ ++  +L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQVNNRKPHGKLRVDMPGSIGRLIVIPSLCEFHSRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +Q+ L ++ +D+  +  DC IR+   +Q SSL+ R++        A+P YL+   EP 
Sbjct: 121 IDLQIGLTDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLFEGTTVASPAYLEKYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           +I+ L +H  + +     +     +W   +D    E +++ L  VN   + +   + G G
Sbjct: 180 TIEALAQHKAVNY--FSSRTGRTIDWAFLIDGKEVEVKMNGLVSVNDADAYVTCGIEGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V  +     L  ++         +   YP +   + K++ F +++  
Sbjct: 238 LIQPPLFMVLPHLRNGTLKEVLPGHKPLPMPISVVYPHSRHLSPKVRVFVDWVAE 292


>gi|188993248|ref|YP_001905258.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735008|emb|CAP53220.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 311

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 135/296 (45%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D +RVF  VA    F+ AA+ L  S ++I+RQ++ LE  +G +L  R  R ++LT  G
Sbjct: 3   TLDAMRVFVAVAERSGFSAAADALDRSTANITRQVAALEQRLGTRLLNRTTRRVSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++   ++   L+  +  +   ++ PSG LR+   +  G   L   L  F   +P ++
Sbjct: 63  TAYYQRCLQLLADLDDLEATVGAQALAPSGLLRVNAPVSFGIVQLAALLPGFRARFPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+  +  D A+R+ +   + +LI R+L T+ +   AAP YL     P   
Sbjct: 123 LDLSLSDRLVDMVEEGFDVALRITRQ-PAPTLIARQLGTVRLVPCAAPAYLARAGTPQHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +          F+     D  +       L+ N+   +    V G G+ +
Sbjct: 182 ADLAGHECLLYHYAPTGDDVRFH---GPDGDVDVRLRGGLRANNGHVLSAAAVAGQGVVI 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            PD++  ++     LVRI+ D       +Y  Y        K+++F +++     D
Sbjct: 239 QPDFLADEHIAAGRLVRILPDYHLADIGIYAVYTSRSHLAPKVRSFIDYLVEHIGD 294


>gi|169633159|ref|YP_001706895.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|260554423|ref|ZP_05826644.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           19606]
 gi|169151951|emb|CAP00809.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii]
 gi|260410965|gb|EEX04262.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           19606]
          Length = 345

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 146/298 (48%), Gaps = 9/298 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D +  +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++L
Sbjct: 1   MRVDLFHAMRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G+  +  T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   Y
Sbjct: 61  TPDGAVYYDRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI + + L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   E
Sbjct: 121 PDIDLVIGLNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGE 179

Query: 180 PLSIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVL 237
           P SI++L   H  I F     +   +F+W   VD  I    +   + VN   + +   + 
Sbjct: 180 PTSIEDLQKNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQ 237

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI   P Y++    ++  L  ++         +   Y +    + K+K F +++  
Sbjct: 238 GFGIIQGPRYMLTNHLESGLLKEVLPQWTPAPMPISAVYLQNRHLSLKVKVFVDWVAE 295


>gi|325122859|gb|ADY82382.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 343

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 145/297 (48%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  ++VF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT
Sbjct: 1   MDL-FHAMKVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  +  T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YP
Sbjct: 60  PDGAVYYDRTARILADVSDIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + + L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP
Sbjct: 120 DIDLVIGLNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEP 178

Query: 181 LSIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
            SI++L   H  I F     +   +F+W   VD  I    +   + VN   + +   + G
Sbjct: 179 TSIEDLQKNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI   P Y++    ++  L  ++         +   Y +    + K+K F +++  
Sbjct: 237 FGIIQGPRYMLTNHLESGLLKEVLPQWTPAPMPISAVYLQNRHLSLKVKVFVDWVAE 293


>gi|253689979|ref|YP_003019169.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756557|gb|ACT14633.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 301

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  V  +GSF  AAE LH+  S+++R I  LE+ +G +L  R  R L++T+
Sbjct: 1   MDRFQAMEIFIRVVDAGSFKKAAETLHVLPSTVTRSIKELESHLGARLLNRTTRALSITD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +   +   +    +   + +G +RI     L +N L   L +F   YP 
Sbjct: 61  VGLRYYDSCKAILRDVHAAESVTAQQKGELNGTIRIGAPPSLVKNFLIPALPDFCERYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +   L +  +DI     DC IR  +P   S L+ R+L   H +  A+P YL+    P 
Sbjct: 121 ITLDFHLGDATVDIVQHGIDCVIRTGEP-PLSRLVARRLGAFHWYICASPRYLEQHGHPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++  L  H  + +          + +       +  P    + VN   + +   V G G+
Sbjct: 180 TLDSLKAHTAVGYIHSRTGRSTRWGFHDEA-HTVAMPLAGQISVNDTDAYVAAGVAGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +  Y+V+    + +LVR+  D+  P   ++  YP++   +  ++AF ++
Sbjct: 239 IRIASYMVRQPLADGHLVRLFPDIGAPLEPIFILYPQSRHLSPAIRAFIDW 289


>gi|126735636|ref|ZP_01751381.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           CCS2]
 gi|126714823|gb|EBA11689.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           CCS2]
          Length = 301

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 106/288 (36%), Positives = 167/288 (57%), Gaps = 4/288 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LE     +++S  +  G+LR+ TT   G   L   L +   LYPD+
Sbjct: 61  GELLFDATKSMNKRLEAASARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYELYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+++ M  YA   YL+    P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMSVRMRLYATQSYLEENGTPAE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ++  H LI       +       L  +   +     +   VN+Y  ++Q  +   GI 
Sbjct: 180 LSDMSNHRLIGQSLNSIQVAAGATLLQHL---MTADIPNTFTVNNYFGVLQGVLNNIGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LPDY+ +D P+LVR++ D+ +    V+  YPE L+ + ++ AFR+F+
Sbjct: 237 VLPDYVTEDFPDLVRVLPDLESGEVPVFLAYPEELRQSKRISAFRDFV 284


>gi|302186316|ref|ZP_07262989.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 301

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 129/295 (43%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +S  +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FQAMRVYVKVVEAGSLTAAAQACSISTTMVSNHLRALEERLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    EV   +  ++   +++   P+G LRI   +  G  +L   L EF   +P
Sbjct: 60  EFGTAYYERCLEVLGLVAESEQLAEQAQGDPTGTLRITAPLTFGSEVLAPALVEFSRRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+L N+ +D+  +  D AIRL    +SS LI R L    +   AAP YL     P
Sbjct: 120 EVRLDLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
               +L  HN + F                +    GE  +     +  N+   + Q    
Sbjct: 180 THPDDLRAHNCLAFAYPAGDEWRTAGTQWRMTGAEGEVLVEVSGSMVANTSAGLYQAARA 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G GI +LPD +V+    +  LV +  D   P    +  Y +      KL++F  +
Sbjct: 240 GLGIVMLPDALVQRDLQDGRLVALFPDYHLPRRPTHLLYVQDRYRLPKLRSFVEY 294


>gi|221199095|ref|ZP_03572140.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205353|ref|ZP_03578369.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175144|gb|EEE07575.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181546|gb|EEE13948.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 335

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 138/291 (47%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 28  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDTRLFQRTTRSMSLTREGELFYEN 87

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LRI +T   G+ ++   L++F   YPDI ++L+L
Sbjct: 88  CRPGIDHLAQALEDMRELRSGPPSGHLRIGSTPGFGRKVIAPLLRDFHARYPDISLELLL 147

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +D S D  D A R  + ++ S+++ R+L+ + M   A+P Y      P  + EL +
Sbjct: 148 NDRPVDFSADRIDVAFRDGR-MEDSAIVARQLIPMQMIVCASPAYAHRYGLPRHVNELAQ 206

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I       +  E   W   VD    + +++     N    +++  + G GIA LP Y
Sbjct: 207 HRCINLRTASGRVKE---WEFKVDGLAQQAQLAAHHTFNDMDLVVRAVLDGLGIAQLPAY 263

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V D   +  LV  +          Y CY        +++AF +++  + R
Sbjct: 264 QVCDLLADGQLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRAFIDYMIEQTR 314


>gi|254453550|ref|ZP_05066987.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198267956|gb|EDY92226.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 309

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 108/289 (37%), Positives = 169/289 (58%), Gaps = 4/289 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+ VA +GS T A ++LHLSQS++SRQI  LE  +   LF+RHARGL LTE
Sbjct: 6   PMDWDKLRIFHAVADAGSLTAAGDKLHLSQSAVSRQIRALEESLSTILFHRHARGLILTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L   T  +  +L+     +++S+ +  G+L++ TT   G   L   L      YPD
Sbjct: 66  QGELLFDATKSMSRRLDVASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPD 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L+L+ + +D+ M  AD AIR+++P Q+  L+++KL+T+ M  YA+  YL       
Sbjct: 126 LNIDLMLEERVLDLPMREADVAIRMKEPSQAD-LVRKKLMTVRMRLYASQAYLDKVGGFD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I+++ +H LI      P   +       V   +   + S L VN+Y  ++Q  +   GI
Sbjct: 185 EIEDIGRHRLIC---QSPSAFQVAAGATLVGHLLSYDKPSLLHVNNYFGVLQAVLSDLGI 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPDY+++D P LVR++ +V +    VYF YPE L+ + ++ AFR+F+
Sbjct: 242 GVLPDYVIEDFPTLVRVLPEVESGEVPVYFAYPEELRQSKRIMAFRDFV 290


>gi|167578737|ref|ZP_02371611.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 299

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +T+ 
Sbjct: 1   MQFDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +R  + +   +  T+  +        G L+I+  +  G   L   + EFL+ +P +
Sbjct: 61  GHEFYRRATRILADVAETEEAMSARHGDLRGTLKISAPMSFGIAYLSPLIAEFLVRHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y +  R P +
Sbjct: 121 RLHVDLSDRHVDLIGEGFDLALRIGA-LPDSTLIARRLGELRMVACCSPAYRRKHRAPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  + +G       E                   L  N+   I    + G GIA
Sbjct: 180 PADLHGHACLLYGQEGRTGWE----FTIGGARRTFEVQGALLANNGDVIRDAAIAGLGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LLP +IV    D   LV ++E        V   YP+  ++    +AF  FI  + R 
Sbjct: 236 LLPHFIVAAALDAGLLVTVLEPFAQSPLPVSAVYPQHRQDMATCRAFLGFIEERLRQ 292


>gi|270261513|ref|ZP_06189786.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044997|gb|EFA18088.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 296

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 141/292 (48%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA +GSF  AAE L L  S++S  I  LE  + ++L  R  R ++LT 
Sbjct: 1   MDRIQAMQIFVRVAEAGSFILAAETLSLPASTVSSTIKNLEKYLQVRLLNRTTRRVSLTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G++      E+   +E T+  L +S  +P G+LR+     +   ++  NLK+F   YPD
Sbjct: 61  EGAQYLAQCREILELIEHTESSLTDSVKRPQGRLRVDMPGGIAHFVVMPNLKDFYRRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + ++++ +D+  +  DC IR    +  S+L+ R L        AAP YL+    P 
Sbjct: 121 IYLMIGVNDRQVDLVQEGVDCVIRTGN-LNDSTLVARPLGQFRWVTCAAPAYLRENGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H  I +     +   +  + +  ++ I  P      VN     ++ C+ G G+
Sbjct: 180 TPEDLSHHRAIHYFSGHARRAGEMCFFSGTEK-ISVPVNGVAAVNETGLYIKMCLEGFGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L + +V ++     L+ +M D    S  V   YP     +  ++AF ++I
Sbjct: 239 AQLAERVVAEHLQEGRLIEVMADWQPASVPVTLLYPHQRFLSPAVRAFADWI 290


>gi|269962869|ref|ZP_06177209.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832423|gb|EEZ86542.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 295

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 155/294 (52%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L+VF  VA+ GSFT AA +L+ +QS++S++I+ LE+EVGI LF+RHAR ++LT 
Sbjct: 1   MDKFDCLKVFSRVAQLGSFTSAANELNTTQSAVSKKIAWLESEVGITLFHRHARAISLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +   +   +  ++++ + +L++     SG+L+++        LL   L EFL  +P+
Sbjct: 61  GGKQYLELAQTLTEQMDSFESQLRQEQASVSGELKLSVPSAFSVRLLSAPLNEFLNQHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + + +K +D+     D AIR    ++ S L  R L+   +  +A+P YL   +   
Sbjct: 121 LSVDVSVSDKFVDLVEGNVDIAIRAAY-LKDSGLKARWLMDNELVYFASPSYLDKNKPIH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L KH  +T+    P  +  F+     +  I       ++ +S   ++Q   LG GI
Sbjct: 180 TANDLSKHLCLTYSLSNPSNLWRFS---DGNETIKVKVKEQVRSDSPEMLVQMAKLGQGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A +P ++V+    N  L++++    +    +Y  Y ++     +++ F +F+  
Sbjct: 237 AAMPKWMVEQELINGELIQVLTQYQSVKLPMYLVYKDSEYQPQRIRTFIDFLVQ 290


>gi|254511011|ref|ZP_05123078.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221534722|gb|EEE37710.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 302

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 109/289 (37%), Positives = 173/289 (59%), Gaps = 5/289 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDKLNLSQSAVSRQIRALEESLDATLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   TS +  +L+T    +++S  +  G LR+ TT   G   L   L +    YPD+
Sbjct: 61  GELLFDATSAMSKRLDTAAARIRDSEDEVFGVLRVTTTFGFGTLWLAPRLPKLYEQYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-REPL 181
            I L+L+ + +D+ M  AD AIR+++P Q+  L++++L+T+ M  YA  +YL +    P 
Sbjct: 121 NIDLMLEERVLDLPMREADVAIRMKEPSQAD-LVRKRLMTVRMLLYATRNYLDSHGGAPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S++++ +H LI      P   +     + V   +     S L VN+Y  ++Q  +   GI
Sbjct: 180 SLEDIARHRLIC---QTPSAPQVGAGASMVKHLMAYNPGSLLTVNNYFGVLQGVLHDLGI 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPDY+ +D P+LV ++ D+ +    VY  YPE L+++ ++ AFR+F+
Sbjct: 237 GMLPDYVTEDFPDLVPVLSDIESADVPVYLAYPEELRHSKRIAAFRDFV 285


>gi|209519759|ref|ZP_03268546.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499832|gb|EDZ99900.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 302

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 131/293 (44%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D      VF  V   GSF  AA+ L  S ++++R ++ LE  +G +L  R +R L+LTE
Sbjct: 1   MDRLRAFEVFVTVVNRGSFARAADALETSPANVTRYVNELEAHLGARLLNRTSRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   +  T+  +  +S++P G+LRI   +  G   L     +F+  YPD
Sbjct: 61  SGETLYSRCKAILEDVAETEGLVSTTSIEPRGRLRINAPVSFGIRYLAPLWPQFMQHYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L ++ +DI  +  D AIR+ +         RKL T      A+P Y+K    P 
Sbjct: 121 VELDITLIDRVVDIVEEGFDLAIRISRAGTVDH-AARKLATSRNILCASPDYVKRWGHPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I +        +++  +    +         +  N+  +     + G G+
Sbjct: 180 TPADLLGHRCIGY--TYAATADEWQLMDHNGKSHAVEVNCHMHTNNGDTARGAALAGHGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              P +++ ++     LV+++ +   P   V   YP     + K++A  +F+ 
Sbjct: 238 IWQPTFLIGEDLRAGRLVQLLPEYRLPDIDVLALYPSRRHVSAKVRAAVDFLV 290


>gi|52842501|ref|YP_096300.1| LysR family transcriptional regulator [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52629612|gb|AAU28353.1| transcriptional regulator, LysR family [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 306

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 137/298 (45%), Gaps = 6/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  FY+V    SFT A   + +++S ISR+IS LE+ +G++L +R  R L LT
Sbjct: 1   MLPDLNDLYFFYLVVEQRSFTKAGRSIGITKSKISRRISELESRLGVRLLHRSTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   ++    +  + ++ Q  ++    KP G++R+       Q+     +  F+  Y 
Sbjct: 61  DIGQIFYQHCKAMVDEAQSAQEAIELVQSKPRGRIRVTCPALFAQSTFTDIITRFMQQYQ 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++ I L   ++ +D+  +  D AIR      + S+L+ RKL        A+P YL +   
Sbjct: 121 EVTIVLNATDRPVDLFQEGFDVAIRFQANTFEDSTLVVRKLGLSFSSLIASPTYLNHHGT 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + Q+L  H    F     + M  F       R I       L+ N +L + Q  +   
Sbjct: 181 PQTPQDLVNHAC--FAKTRNEGMSQFLLTHNDGRQISVHFQPILESNEWLVLKQAALSHL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI ++P  I +   D+  LV I+ +   P  ++Y  YP        +++F +F+  + 
Sbjct: 239 GITMMPQEICRKEIDSGLLVPILTEWSLPKASLYIIYPSRRGLIPAIRSFIDFVAEEL 296


>gi|300714723|ref|YP_003739526.1| O-succinylbenzoate synthase [Erwinia billingiae Eb661]
 gi|299060559|emb|CAX57666.1| O-succinylbenzoate synthase [Erwinia billingiae Eb661]
          Length = 299

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 134/302 (44%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA   SFT AA+ L L + S+SRQ+  LE  +G +L +R  R + LT+
Sbjct: 1   MDKIHAMQVFVRVAELQSFTRAADSLGLPKGSLSRQLQALENSMGTRLLHRTTRRVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    +V   LE      Q      SG+LR+  ++ L  N +   L +FL  YP 
Sbjct: 61  DGLVYYERCRDVLATLEEMDSLFQHDPTTLSGRLRVDMSVSLASNFILPLLPQFLQQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC IR    +  S LI R L  +     A+P YL+    P 
Sbjct: 121 IELELSSSDRRVDVIREGFDCVIR-GGTLGDSGLIARPLGKMTQINCASPDYLERFGTPQ 179

Query: 182 SIQELDKHNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++ +L +H ++ +   +   P+  E ++   T     G      + VN+ ++    C+ G
Sbjct: 180 TLDDLGQHAMVHYSQQLGVHPQGFEYWDGKTTRFIQTG----GAVTVNNTVTYQSACLSG 235

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P   +K +     LV ++         +   YP       ++  F  +I    +
Sbjct: 236 LGIIQAPLAGMKASLANKTLVEVLPHFRAEPMPISLIYPHRRNLARRVHVFMEWITQTMK 295

Query: 296 DW 297
            +
Sbjct: 296 KY 297


>gi|238762653|ref|ZP_04623622.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           kristensenii ATCC 33638]
 gi|238698958|gb|EEP91706.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           kristensenii ATCC 33638]
          Length = 305

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 149/298 (50%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V   GSF+ AAEQL  + S +SR I  LE ++G+ L  R  R ++LT
Sbjct: 4   MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTIKKLENKLGVTLLNRTTRQISLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +  ++ T + E+ ++ + P G LRI  +  +  +++   + EF   YP
Sbjct: 64  QEGENYFRRVQNILREMATAENEILDNQLNPKGLLRIDASTPVVLHIIAPLMAEFRQRYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  +KL+T + H  A+P YLK    P
Sbjct: 124 LVTLSLVSSETFINLIERKVDIAIRVGS-LQDSTLRAKKLMTSYRHILASPAYLKQNGTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  + F DL          LA  D  + E   S L  N+  +  + C+ G+G
Sbjct: 183 QTTADLQHHLCLGFNDLPALNRWP---LAGADGQLYEIN-SDLTSNNGETQRRLCLEGNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++++ +    +L+ I+++   P +  +   Y    + + +L+ F +FI  + 
Sbjct: 239 IACLSDFMIQQDLQRGDLIPILQEHTLPVAMPINAVYYSDQEVSNRLRCFIDFINERL 296


>gi|171319478|ref|ZP_02908581.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095287|gb|EDT40273.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 304

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AAE LH+S++++++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMRAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVRLLNRTTRRINVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   + +   ++  +  L  +S  P G+LR+       + +L   L  FL  YPD
Sbjct: 61  DGIAYYERVTRLLADMDDAETSLSSASAVPRGRLRVDVPSPFARLILIPALPAFLARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +DI  +  DC +R  +P    S++ R++  + +   A+P YL     P 
Sbjct: 121 IQLDMGVSDRTVDIIGENVDCVVRGGEP-NDQSMVARRVADLSLGIVASPGYLALAGTPS 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              EL    H ++ F       +         +    + R   L V+   + +   V G 
Sbjct: 180 HPAELENSHHRIVGFSWGRAGKLYPLVMHRHGETVAVQGR-YALVVDDGNAYLAAGVAGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP Y+ K   +   LV + ED       +Y  YP     + KL+AF +++  
Sbjct: 239 GIMWLPHYMAKAHLERGELVTLFEDWQLDPMPLYIAYPPNRHVSAKLRAFIDWVVE 294


>gi|15964529|ref|NP_384882.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307308477|ref|ZP_07588181.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307319040|ref|ZP_07598471.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15073706|emb|CAC45348.1| Probable transcription regulator [Sinorhizobium meliloti 1021]
 gi|306895454|gb|EFN26209.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306901080|gb|EFN31688.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 298

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  V  +GS + A   L  S + IS++I  LE  +G +L  R  R ++LTE G
Sbjct: 3   NLGDLEIFARVVSTGSMSAAGRALGFSAAVISKRIKRLEDRLGARLLQRTTRQISLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   LE  +      S +  G LRI+     G+  +  +L  F+  +PD++
Sbjct: 63  QGFYDRVLGILAGLEEAEAYASGRSSQVQGTLRISAPTSFGRMHIAPHLTGFMKDHPDLK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++L +   DI  +  D AIR+ + +  SSL+ RKL  +     AAP Y+     P  I
Sbjct: 123 LHIVLTDDFTDIVAEGFDLAIRIGE-LSDSSLVARKLAPVRRLLCAAPSYVARHGAPTEI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL KH  +      P    D   L   D  +       L  NS   I +  + G+GIAL
Sbjct: 182 GELAKHICL------PAHNNDNWKLEGPDGSLSYRPEGPLVTNSSEIIREAVIAGAGIAL 235

Query: 244 LPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + +        LV+++     +   T+   YP       K++ F +++  
Sbjct: 236 RSTWDIGRELREGRLVQVLPQWEGSHKLTLSAVYPSRQFLPAKVRQFIDYLAA 288


>gi|323524419|ref|YP_004226572.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323381421|gb|ADX53512.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 367

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDVTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGTPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       +  +     + +  N+   + Q+ +LG GI
Sbjct: 181 RPEHLLEHPCLSLPS---EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|158423675|ref|YP_001524967.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158330564|dbj|BAF88049.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 315

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 136/285 (47%), Gaps = 6/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V  +GSF+ AAE+L  S    S+ +S LETE+G++L  R  R L+ TE G   + 
Sbjct: 20  RMFVAVLDTGSFSAAAERLGTSSGQASKLVSRLETELGVQLLKRTTRALSPTEVGQAYYE 79

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  + E     ++ +S  P+G+LR++  +  G   L   L +F   +P IQ+ +  
Sbjct: 80  RIKPLLDEFEALDASVRNASGAPAGRLRLSAPMSFGHIQLMPLLLDFARAFPQIQLNVSF 139

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++  +  D AIR+  P + SSLI RKL    +   A+P YL +   P + Q+L +
Sbjct: 140 SDRLVNVVDEGFDAAIRIGSP-RDSSLIARKLCDSQIMWLASPAYLASHGTPQTPQDLVR 198

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  I   +     +  F     V   +       ++ +S  + +     G GIA +P +I
Sbjct: 199 HACIIDDNFPEPLVWRFQTPDGVGDAVTV--SGRMRFSSGEACLAAAEAGLGIARMPTFI 256

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                    +V +  D++ P+  VY  YP       K++A  +F+
Sbjct: 257 AGPKLKAGTVVPLFRDLMPPARGVYALYPPGRHLAVKVRALVDFL 301


>gi|126733985|ref|ZP_01749732.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           CCS2]
 gi|126716851|gb|EBA13715.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           CCS2]
          Length = 295

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE G   +
Sbjct: 1   MEAFATVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTEIGLAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V +        +      PSG LRI+   D G N L   L +FL  +PDI + + 
Sbjct: 61  DRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLGDFLTEFPDITVNMA 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P  I +L+
Sbjct: 121 LNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTDTTKRMIASPAYFEQYGRPEKIDDLN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H L+ + +     +      +   R +       L VN   S++  C+ G GIA LP +
Sbjct: 180 EHKLLHYSNQANSAVWKLTAPSGEKRQVRT--AGWLTVNDGQSLLNACIGGLGIAYLPSF 237

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  D      +   + D+   +  +Y  YP       K++AF +F+  +  D
Sbjct: 238 LYADAMQQGLVEEAIPDLPVETQGIYAVYPPGRFTQPKVRAFIDFLAHEFAD 289


>gi|86356453|ref|YP_468345.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280555|gb|ABC89618.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 298

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  V  +GS + A   L  S + +S++I  LE  +G +L  R  R ++LTE G
Sbjct: 3   NLGDLEIFAKVVATGSMSLAGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   LE  +  +   S +  G L+I+     G+  +  +L  F+  +P++ 
Sbjct: 63  QGFYDRVLGILAGLEEAEFYISGRSAQMHGTLKISAPTSFGRMHIAPHLTAFMQAHPELA 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L ++  DI     D AIR+ + +  SSL+ R+L  +     A+  YL    EP  I
Sbjct: 123 INLVLTDEFSDIIGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASADYLAAHGEPRDI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +      P    D   L   D P+       L  NS   I +  + G GIAL
Sbjct: 182 DELKHHRCL------PAHNGDTWRLNGPDGPLSLRPDGMLITNSSEVIREAVISGLGIAL 235

Query: 244 LPDYIVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
              + + +   +  LV+++         T+   YP       K++ F +++  
Sbjct: 236 RSTWDIGNELKSGRLVQVLPAYEGSHNVTLSAVYPSRQFLPAKVRLFIDYLTE 288


>gi|187922312|ref|YP_001893954.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713506|gb|ACD14730.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 367

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDVTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       +  +     + +  N+   + Q+ +LG GI
Sbjct: 181 RPEHLLEHPCLSLPS---EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|295675121|ref|YP_003603645.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295434964|gb|ADG14134.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 367

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYAERYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDVTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGMPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       +  +     + +  N+   + Q+ +LG GI
Sbjct: 181 RPEHLLEHPCLSLPS---EYWGDERVFTGPEGEVRVRPSNVIVANNTEMLRQFALLGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGRDMTRGRLVRLLGDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|238896970|ref|YP_002921715.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|262040577|ref|ZP_06013817.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330001451|ref|ZP_08304012.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|238549297|dbj|BAH65648.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259042069|gb|EEW43100.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328537652|gb|EGF63866.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 299

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 134/293 (45%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AAE L L + S+SRQI  LE+ +G++L +R  R + LT+
Sbjct: 1   MDKIHAMQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+      Q      SG+LR+   +   + ++  +L  FL  YP 
Sbjct: 61  DGMVYYERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKMVIPHLPTFLQQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+   ++ S LI R L  +     A+P YL     P 
Sbjct: 121 IELELSSSDRLVDVIREGFDCVVRVGA-LKDSGLIARPLGKLTQINCASPDYLARFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+++L  H LI +   +      F     +D  +   +    L VNS  +    C+ G G
Sbjct: 180 SLEDLADHALIHYASTLGVRPPGFE--VMIDGAVRWVKTGGILTVNSTETYQAACIAGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +P   V++     +L+ I+         V   YP     + ++  F  ++
Sbjct: 238 IIQVPRTGVREALRAGDLIEILPQYRAEPLPVSLIYPHRRNLSRRVNLFMEWL 290


>gi|26988347|ref|NP_743772.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24983097|gb|AAN67236.1|AE016350_9 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 298

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W+ +  F  VA SG FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TL+
Sbjct: 1   MSSRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEDRLQTRLLYRSTRRVTLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP
Sbjct: 61  EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + L N  +D+  +  D AIRL + +  S L+  +L    M+   +P YL+    P
Sbjct: 121 QLRVDVELSNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCVSPAYLERYGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL +HN +           D   L    R I +      + NS  +++   + G G
Sbjct: 180 HSLSELARHNCLV-------GSSDLWALQQDGREISQRVQGNWRCNSGQAVLDAALQGIG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           +  LPDY V ++     LV ++E    P+  V+  YP+    + K++   +++       
Sbjct: 233 LCQLPDYYVLEHLNSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYLKEGLAGL 292

Query: 295 RDWKF 299
            +++F
Sbjct: 293 PEYRF 297


>gi|325121624|gb|ADY81147.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 299

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 147/301 (48%), Gaps = 6/301 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    +++F  VA +GSF HAAE L L  S+++  +  LE  + ++L  R  R ++L
Sbjct: 1   MRLDRIQAMQIFVRVAEAGSFIHAAEALSLPASTVTSTVKNLEKYLQVRLLNRTTRRVSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G++      E+   +E T+  L  +  +P G+LR+     +  +++  NL+EF   Y
Sbjct: 61  TPEGAEYLIQCREIIDLIEHTESNLTNAIKQPQGRLRVDMPAGIAHSVIMPNLQEFQQRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI + + + ++ +D+  +  DC IR+   +++S+L+ R L        A+  YLK    
Sbjct: 121 PDIYLMIGVSDRQVDLIKEGVDCVIRMGN-LENSTLVARPLGEFRWVTCASAAYLKENGF 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L+ H  I +     +   +  ++   ++   +     + VN     ++ C+ G 
Sbjct: 180 PQTPNDLEHHRAIHYFSGSHRHAGEMRFVRNEEKKTVQMN-GTVAVNETELYIKMCLEGY 238

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+A L + +V D+     L+ +++D   P   V   YP     +  ++ F ++I    R+
Sbjct: 239 GLAQLAERLVIDHLKEKRLIAVLQDWCPPPVAVTLLYPHQRFLSPAVRVFSDWIDELIRN 298

Query: 297 W 297
           +
Sbjct: 299 Y 299


>gi|257140794|ref|ZP_05589056.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 299

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +T+ 
Sbjct: 1   MQFDDLRIFVTTVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +R  + +   +  T+  +        G L+I+  +  G   L   + EFL+ +P +
Sbjct: 61  GHEFYRRATRILADVAETEEAMSARHGDLRGTLKISAPMSFGIAYLSPLIAEFLVRHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y +  R P +
Sbjct: 121 RLHVDLSDRHVDLIGEGFDLALRIGA-LPDSTLIARRLGELRMVACCSPAYRRKHRAPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  + +G       E                   L  N+   I    + G GIA
Sbjct: 180 PADLHGHACLLYGQEGRTGWE----FTIGGARRTFEVQGALLANNGDVIRDAAIAGLGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LLP +IV    D   LV ++E        V   YP+  ++    +AF  FI  + R 
Sbjct: 236 LLPHFIVAAALDAGLLVTVLEPFAQSPLPVSAVYPQHRQDMATCRAFLGFIEERLRQ 292


>gi|163792437|ref|ZP_02186414.1| Transcriptional Regulator, LysR family protein [alpha
           proteobacterium BAL199]
 gi|159182142|gb|EDP66651.1| Transcriptional Regulator, LysR family protein [alpha
           proteobacterium BAL199]
          Length = 311

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 139/297 (46%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L+ F  VA +G F+ AA++L LS++  SR +  LE  +G++L +R  R ++L+E
Sbjct: 1   MDRLTLLQTFVAVADTGGFSSAADRLGLSRAMTSRHVQVLEDRLGVRLLHRTTRRVSLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  + E++     P G LR+   +  G+  L   L  FL+ +P 
Sbjct: 61  AGLGYLERARRLLADFDDAETEVRGERATPRGTLRVNGPVSFGRAHLAATLPSFLVRHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L ++++ +D+  +  D AIR+ + +  SSLI ++L T+ +   A+P YL     P 
Sbjct: 121 LSVELTVNDRVVDLIEEGYDVAIRIGR-LSDSSLIAKRLGTVAVRLAASPAYLAAHGIPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + +       +    + +   R         L  N+   + +    G+GI
Sbjct: 180 TPNDLTDHTWLGY--TYSTGVAGLRFTSADGRDAVVRLGPRLTANNGDVLTEIAAGGAGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L PD+I+     +  LV ++ D   P   ++  + ++     K++AF + +    R
Sbjct: 238 ILQPDFILGPYLADGRLVPVLPDWGVPDLDIHAVHHQSRHVAAKVRAFVDHLAECFR 294


>gi|163761170|ref|ZP_02168247.1| putative LysR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162281721|gb|EDQ32015.1| putative LysR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 246

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 130/245 (53%), Positives = 176/245 (71%), Gaps = 1/245 (0%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+  A +GSFTHAAE+LHLSQS+ISRQ+S LE ++G KLF+RHARGL L+E
Sbjct: 3   PLDWDKLRIFHAAAEAGSFTHAAEKLHLSQSAISRQVSSLEMDIGAKLFHRHARGLILSE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L++   EV  KLE  + +L E+  +PSGKLR+ TT+ LGQ  L   ++EF  LYPD
Sbjct: 63  QGEILYQTAHEVLMKLEAVKNQLTETRERPSGKLRVTTTVGLGQAWLTEKVQEFQALYPD 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QL+LDN+++D++M  ADCAIRLR+P Q   LIQR++ T+H H YAAP YL    EP 
Sbjct: 123 VQVQLLLDNEELDVNMRQADCAIRLRQP-QQPDLIQRRMFTVHFHIYAAPSYLARHGEPK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++++LD H +ITFG+  P  + D NWL    R    PRI+ LQVN+  +I +  + G+GI
Sbjct: 182 TLEDLDNHRIITFGEPAPNYLRDVNWLEQAGRTPDNPRIAQLQVNNLPAIRRATINGAGI 241

Query: 242 ALLPD 246
           +LLPD
Sbjct: 242 SLLPD 246


>gi|313202143|ref|YP_004040801.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441459|gb|ADQ85565.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 314

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 152/293 (51%), Gaps = 6/293 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D ++ ++ F  V    SFT AA  L+L +++IS Q+  LE  +G+KL  R  R +++
Sbjct: 1   MAMDRFEAMQAFTRVVELASFTKAALSLNLPKTTISAQVQALENRLGVKLLNRTTRHVSV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G+  +     + ++LE T+  L++++ +PSG+LR+     +G+ +L   L +F   Y
Sbjct: 61  TTDGAAYYERAVALLNELEETEAALRQATSRPSGRLRVDVPGSIGRRILIPALADFTEKY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI +++  +++ +D+  +  DC IR   P+   SL+ R++ ++     A P YL+    
Sbjct: 121 PDIILEMGCNDRPVDLLEEGVDCVIRGGDPL-DQSLVARRVASLRFVTCATPGYLRKHGI 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PL  ++L++H  I +       + +F++    +R         +  N   + +  C+ G 
Sbjct: 180 PLQPRDLERHTGIHYFSSKTGKVYEFDFERDGER-YEVSSHRKMIFNDGDACLAACLAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+     ++V+++     L  ++   ++ +  +Y  YP+    + K++AF ++
Sbjct: 239 GVFQAATFMVQEHIASGELQVVLGTHLSENLPLYVLYPQNRHLSSKVRAFIDW 291


>gi|34499543|ref|NP_903758.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34105393|gb|AAQ61748.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 320

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 7/295 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L VF   A +GSF+ AA +L +S ++IS+ I+ LE E+ ++LF R  R LTLTE G +
Sbjct: 2   KALMVFMTTAENGSFSDAARKLGVSPAAISQSIARLEQELEVRLFNRTTRQLTLTEDGRR 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +       + L++   +L+ S  +P+G LR++     G+  +   + EF   YP +++ 
Sbjct: 62  FYAQCRGPVNNLDSAINQLKASRDEPAGHLRVSMPNSFGRRFILPIMGEFCERYPKVRVF 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             LD+   D+  D  D  +R    +  S ++ R L  + ++  A+P Y      P S +E
Sbjct: 122 FGLDDHFSDLIEDGYDVGVRTGM-MPDSRMVARNLAQMPLYVVASPEYWDQHGRPSSPEE 180

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  ++ I F    P     F W        I         +N   ++ +   LG G+A L
Sbjct: 181 LSGYDCINF--QFPTSGRLFKWEFDRKGERIPLEVNGTYTLNDMEAVAELARLGMGVAQL 238

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P + V     +  L  ++ D+++   ++Y C+P       + + F +F+  K  D
Sbjct: 239 PGHEVVHLIRSGELEPVLTDMVSLERSIYICFPHRDHIAPRTRVFVDFVVEKLAD 293


>gi|34496437|ref|NP_900652.1| transcription regulator protein [Chromobacterium violaceum ATCC
           12472]
 gi|34102290|gb|AAQ58656.1| probable transcription regulator protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 295

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 139/295 (47%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++R F  VA  GSF  AAE+L LS++ +++ ++ LE  +G++L +R  R L+LTE
Sbjct: 1   MDRFSEIRAFVCVAELGSFVAAAERLELSRAMVTKLVAALENRLGVRLMHRTTRKLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +L+     L   + +P G+LR++  +  G   L   +  F   +P 
Sbjct: 61  AGETYLAQAGSLLGELDELDALLSHGASEPVGRLRVSAPVSFGMRYLGRIIGGFHQRHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L L+++ +D+  +  D A+R+   +  SSL+ RKL  +     A+P YL     P 
Sbjct: 121 IEVELNLNDRRVDLVEEGFDLALRVSN-LSDSSLVARKLAQVEDLLAASPDYLARRGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             +EL  H  + +       + D+      D   G  ++   L+ N+   +    V G G
Sbjct: 180 GPEELAGHQCLLYALTAQPNVWDYQ---APDGTQGRVKVKGGLKANNGDVLTDAAVHGMG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I L P +++++   +  LV ++         +   YP      GK++ F  ++  
Sbjct: 237 IVLQPRFLLEEELADGRLVPVLPGYHWHCLDLSVVYPVRRHVPGKVRVFVEYLAE 291


>gi|325578395|ref|ZP_08148530.1| LysR family transcriptional regulator [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160131|gb|EGC72260.1| LysR family transcriptional regulator [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 299

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 140/293 (47%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + VF  V  + SFT AA Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISVFCKVIETQSFTQAANQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIVPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L      +   +    G L I+   D G   +  NL +F+ L+P+
Sbjct: 61  AGMLYYQRCQAILLDLSEADSSISNMATSLQGNLLISVPRDFGLLYISPNLPKFIELHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  ++K +D+  +  D A+R+   +Q SSL+ RK+ +  MH  A+P YL+    PL
Sbjct: 121 LHVEIEFEDKRVDLVAEGYDLALRIGY-MQDSSLVARKISSSPMHFVASPSYLEARGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ H  + +       +   +W +T    I   +I S +  N+ +++++    G G
Sbjct: 180 TPDDLEYHQGLLYKS----SLNQVHWQSTKANQIQRYKIQSKVVSNNGMALLEMTKAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I+  P + VKD   +  LV I+ +       +Y  YP       K++AF  F+
Sbjct: 236 ISNAPSFFVKDALASGELVEILSEYKQKPLDIYVVYPNRRHLPAKVRAFIEFL 288


>gi|269104645|ref|ZP_06157341.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161285|gb|EEZ39782.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 299

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 132/289 (45%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  V +S SF+ AA  L  S S +S++++ LE  +G++L  R  R L+LT +G 
Sbjct: 7   FDGIIIFVQVVKSESFSAAAHLLGHSSSHVSKEVNKLENRLGVRLLNRTTRSLSLTPEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++    E     +      P G LRI   I      LQ  L E+   YP++ +
Sbjct: 67  AYFEQCIQLIQGAEDAVSLITHHEASPRGTLRINCPIGFSHQHLQPILVEYAKRYPNVIL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +K ID+  D  D AIR    +  SSLI + +    ++  A+P YL+    P    
Sbjct: 127 DLDLTDKRIDVIADGYDLAIRAAAQLDESSLICKAIYKSCIYTVASPDYLERKGRPYHPF 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL KH+ I + +L  K    + ++   ++ I       ++ N     +   + G GI  L
Sbjct: 187 ELTKHDCICYSNL--KSPYRWEYIDKSNQLINVDVRPRVKTNDGNIELAMTLAGQGICRL 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P++ + DN     L  + ED+      VY  YP     + K++ F + I
Sbjct: 245 PEFYIADNLKTGQLEILFEDLPETEVNVYLLYPSRKHLSPKVRCFIDLI 293


>gi|197335587|ref|YP_002155860.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197317077|gb|ACH66524.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 300

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 138/291 (47%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R+F  V  +GS T AAE+L+L++S+IS+++S LE ++G+KL  R  R  +LTE G 
Sbjct: 4   LESMRIFITVVETGSITRAAERLNLAKSAISKRLSELEQQLGVKLLNRTTRTSSLTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +++     +  +S K +G L++A  +  G   L   L  F  L+P++++
Sbjct: 64  VYLNKCKLILDEVDDLHCHISSTSSKLNGVLKLAVPLTFGLKHLVPALDNFAKLHPELKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +K ID+  D  D AIR+   + +S+L  + L  IH     +P YL       +  
Sbjct: 124 DIDFSDKKIDLVEDGVDLAIRIGS-LNNSTLRAKPLAPIHHVLCVSPDYLTEHGHITTPN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+ +       +E  +     ++ +  P  S    N+   +    V G G+   
Sbjct: 183 DLKSHKLLRYSQQPLSGVELID---NNNKTMTVPMESFCIANNGDFLKTMAVSGHGVLFT 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P +IV +   N +L+ IM D    S   Y  YPE      K++   +F+  
Sbjct: 240 PKFIVWEELANGSLIPIMTDYRFNSIKAYAVYPETRYLPRKVRMLIDFLSE 290


>gi|295700012|ref|YP_003607905.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439225|gb|ADG18394.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 334

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 143/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q  + KP GKLRI     +G+ L+   L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPALCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC +R+   +Q SSL+ R++        AAP Y+K    P 
Sbjct: 121 IDLQLGLTDRPVDLLQEGVDCVVRVGA-LQDSSLVARRIGLFEGVTCAAPDYIKRAGMPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S+++L+ H  + +     +     +W   V+    E ++ S + VN   + +   + G G
Sbjct: 180 SLEDLENHKAVNY--FSSRTGRTIDWAFLVNGNEVEVKMKSIVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     +  LV ++ ++      +   YP +   + K++ F ++I  
Sbjct: 238 LIQPALFMVLPHLRSGQLVEVLPELKPLPMPISAVYPHSRHLSPKVRVFVDWIAE 292


>gi|54309397|ref|YP_130417.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913833|emb|CAG20615.1| putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 325

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 137/292 (46%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D   +FY +   GSF+ AA+Q+ L++S +S++I+ LE ++G++L YR  R LTLTE G
Sbjct: 28  NTDNFLIFYHLIEQGSFSKAADQVGLTKSVVSKRITRLEQDLGVQLVYRTTRKLTLTEAG 87

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   EVY+ ++  +  +       +G +R+      G+ LL   + EF   YP+I 
Sbjct: 88  EVFFGHAREVYYSVQNAEEAMSGLGESLTGTIRLTVPTISGELLLPKAISEFSAKYPEIH 147

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + LDN+ +DI  +  D AIR  + +  SS I R+LV  H     AP Y      P   
Sbjct: 148 IDMDLDNRFVDIVKEGFDLAIRTGE-LPDSSFIARRLVDAHWVICGAPEYFARNGVPKIA 206

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  HN + +        E        ++P           N+  ++ +  + G G+  
Sbjct: 207 SELVNHNCLAYSYQETGAKEWL--FKGENKPYTIKVNGNFTTNNASALRRAALFGQGLVY 264

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +P  +V ++    +L+ ++++ +     +Y  YP       K+K F   ++ 
Sbjct: 265 VPKVLVAEDLKAGSLIEVLQEQVAKCLGIYAMYPYTRHQPIKVKLFIEHLYQ 316


>gi|239995448|ref|ZP_04715972.1| transcriptional regulator [Alteromonas macleodii ATCC 27126]
          Length = 296

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 5/289 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR GSF+ AA  L L +SSIS+ ++ LE ++G +LF R  R ++LT  G      +
Sbjct: 5   FVETARLGSFSAAAALLGLPKSSISQAVTNLEKQLGTRLFNRSTRSVSLTSDGETFLPQS 64

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  + +  Q +   S+   SG+LRI        N+L   L EF+  YP I +++   +
Sbjct: 65  IALLSEWDALQSQFITSADSVSGELRIDMPSRFATNILLPILGEFISTYPKITLRVSSVD 124

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  DC IR+   +  SSL+ R+L+T  ++   +P Y      P S+++L  H 
Sbjct: 125 RKVDLIKEGFDCVIRVGA-LAGSSLVARRLLTYPIYNCVSPDYATKWGVPQSLEDLANHK 183

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           LI +   +     +F ++   +    E + S L VNS  +    C  G GIA +P   V+
Sbjct: 184 LIDYSHTLSHKTPEFEFMKGEELQTVEMQ-SLLSVNSTQAYFAACASGLGIAQIPSVGVE 242

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                  L+R++ +    +  V   YP   +   +LK F  ++  K R+
Sbjct: 243 SELKEGKLIRVLPEFEAQAMPVNLLYPSRRQMPLRLKVFSEWLVDKLRE 291


>gi|254295197|ref|YP_003061220.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254043728|gb|ACT60523.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 302

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 135/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F     SGSFT AA+QL L++S+ISR+I  LE  +  +L  R  R +TLTEQG 
Sbjct: 4   YEDIEAFVRTIESGSFTAAAKQLGLAKSAISRRIQDLEARLDTQLIIRTTRKITLTEQGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      + H  +  +  +  +    +G +R+   +  G N L     EFL   P+I++
Sbjct: 64  TLFERAKILLHDWQEAEASITSNQAALAGTIRVTAPLTFGVNHLSAAFIEFLDANPNIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  D AIR+ + +  SSLI RKL  I   A A+P YL     P + +
Sbjct: 124 DIDFSDRKVDLVSEGMDLAIRIGQ-LPDSSLIARKLAPIRAIAAASPEYLAKNGTPRTPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L K N + +G    K +  + + A           S L+  +   +    + G G+ + 
Sbjct: 183 DLQKLNELRYGL---KDVRSWKYTAPDGSVGEIEMPSVLKSTNGDFLKDAAIAGKGVVIE 239

Query: 245 PDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I      +  LV+I+ D   P    Y  YP     + +++   + +
Sbjct: 240 PSFILCQALKDGRLVQILPDYKWPEIGAYAIYPPTRHLSARVRKLVDHL 288


>gi|224826896|ref|ZP_03699995.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224600883|gb|EEG07067.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 295

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 141/303 (46%), Gaps = 15/303 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W+ +  F  VA SGSF+ AAE+L +S S +SRQ+  LE  +  +LFYR  R ++LTE
Sbjct: 1   MDGWEGIAEFVAVAESGSFSRAAERLRVSSSHVSRQVMRLEERLQARLFYRSTRKVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++    +   + +      P G LR+   +  G+  +   + +F+  +P 
Sbjct: 61  AGQTFFSHCQQLQEARDEAFLAVNALHSSPKGLLRMTCAVTYGERFVVPLVNDFMAGHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++ L N+  D+  +  D AIRL + +  SSL+  +L    MH  AAP YL +   P 
Sbjct: 121 LAVEIELTNRTADLLHEGFDLAIRLGQ-LADSSLVATRLAPRTMHLCAAPAYLAHHGTPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL +H  +     +     D        RP         + NS  +++   + G G+
Sbjct: 180 TLGELARHQCLIGTSTVWSFRLD-------GRPWHFKPQGRWRCNSGQAVLDAALRGFGL 232

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKAR 295
             LPDY V++      LV ++     P+  V+  YP+    + KL+   + +     K  
Sbjct: 233 CQLPDYYVREPLRQGRLVELLPAHTPPNTAVWAVYPQQRHLSAKLRLMVDHLREGLAKLP 292

Query: 296 DWK 298
           +++
Sbjct: 293 EYR 295


>gi|83719370|ref|YP_440683.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167579354|ref|ZP_02372228.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167617454|ref|ZP_02386085.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257140670|ref|ZP_05588932.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83653195|gb|ABC37258.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 351

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGTPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLVEHPCLSLPS---EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|299069520|emb|CBJ40789.1| putative transcription regulator protein, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 315

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 146/299 (48%), Gaps = 8/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T 
Sbjct: 1   MDRLQAMQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   LE T+    +S+    G LRI     +G+ LL   +++F   YPD
Sbjct: 61  DGAAYYERCMRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+++ + ++ +D+  +  DCA+R+ + +Q S+L+ R++  + M   A+P YL+    P 
Sbjct: 121 LQLEIGMSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGQLSMVNCASPDYLERYGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           ++++L  H  I      P+     +W   +D      ++  L  VN   S M   + G G
Sbjct: 180 ALEDLQDH--IAVNYFSPRNGRRMDWDFVIDGQKQIHKVRSLVSVNDAESAMACALHGLG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +     ++  ++     LV ++ D ++    V   YP     + K++ F +++ +   D
Sbjct: 238 LLQTARFLAYEHLQSGQLVEVLPDYVSEPLPVSVIYPHNRHLSPKVRVFVDWVAMLFAD 296


>gi|284919978|emb|CBG33033.1| LysR-family transcriptional regulator [Escherichia coli 042]
          Length = 304

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 141/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G L I     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLHIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    + 
Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKIIASPDYISRYGKS 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L +H  + F +  P  +  +  +A  D  + E +   L  NS  ++ Q C+ G+G
Sbjct: 180 ETLDDLKQHVCLGFTE--PASLNTWP-IACSDGQLHEVKYG-LSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV +M D + P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVK 294


>gi|251792526|ref|YP_003007252.1| LysR protein [Aggregatibacter aphrophilus NJ8700]
 gi|247533919|gb|ACS97165.1| LysR protein [Aggregatibacter aphrophilus NJ8700]
          Length = 302

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA   ++S +  S+ +S LE  +  +L +R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTQAAALQNISVAMASKLVSQLEEHLKTRLLHRTTRKIVPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  ++    V  +LE     +   S    G L ++   D G   +  NL  F+  +P+
Sbjct: 61  AGSIYYQRCQPVLFELEDADSSISNLSTSLQGHLTVSVPRDFGLRFITPNLGSFVKAHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I +  +++ ID+  +  D A+R+   +Q SSL+ RK+ T  MH  A+P YL     P 
Sbjct: 121 LHIDIEFNDRIIDLVSEGFDLALRIGY-LQDSSLVARKVATSSMHFVASPEYLAKHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L+ H+ + +     +   + +      R       S L  N+ L++   C  G GI
Sbjct: 180 TPEDLEHHDCLLYKSTGNQIYWESDKHNKTQR---VKMRSKLMCNNGLTLATLCTEGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P + +++   +  LV ++ D    S  ++  YP       K+ AF +FI
Sbjct: 237 INSPRFFIEEELASGKLVEVLADYRQQSLDLHVIYPNRRHLAAKVTAFIDFI 288


>gi|27381664|ref|NP_773193.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27354833|dbj|BAC51818.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 323

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 140/293 (47%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L VF  VA  GS + AA  + LSQ+ +++ ++ LE  +G KLF+R  R L++TE G 
Sbjct: 22  LTSLEVFAKVAAIGSLSGAARAMGLSQTMVTKHVAALEARLGTKLFHRTTRRLSITEAGR 81

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  +   +E     +    V+P G LR+   +  G   +   + EF   +P++ +
Sbjct: 82  SYLESSERILADMEAADAAVARERVEPRGLLRVNVPVVFGTRQIAPAIAEFSERHPEVTV 141

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L+++ +D++ +  D AIR+ K ++ SS++ RKL    +   AAP YL     P  + 
Sbjct: 142 ELGLNDRLVDLAEEGWDLAIRIGK-LRDSSMVARKLAPNRLVVCAAPSYLAKHGTPRRVA 200

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +   + +      WL  VD  I       L+ N+  ++    + G G+A  
Sbjct: 201 DLAAHNCLGY--TLSQQASAAEWLFGVDGEIRVQVSGTLRANNGDALRAATLAGLGLARQ 258

Query: 245 PDYIVKDNPNLVRI----MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P +I+ D+     +    ++     +  V+  Y    +   K++AF +F+  +
Sbjct: 259 PTFIIADDLRAGTLLALPLDQPEIQTSAVHAVYLPDRRPPAKVRAFIDFLAAR 311


>gi|209519774|ref|ZP_03268560.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499784|gb|EDZ99853.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 334

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 142/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G +L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E T+   Q  + KP GKLRI     +G+ L+   L EF   YPD
Sbjct: 61  DGAAYYERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPALCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC +R+   +Q SSL+ R++        A+P Y+K    P 
Sbjct: 121 IDLQLGLTDRPVDLLQEGVDCVVRVGA-LQDSSLVARRIGLFEGVTCASPDYIKRAGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S+++LD H  + +     +     +W   V+    E ++ S + VN   + +   + G G
Sbjct: 180 SLEDLDNHKAVNY--FSSRTGRTIDWAFLVNGNEVEVKMKSIVSVNDADAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     +  L+ ++  +      +   YP +   + K++ F ++I  
Sbjct: 238 LIQPALFMVLPHLRSGQLIEVLPKLKPLPMPISAVYPHSRHLSPKVRVFVDWIAE 292


>gi|71278724|ref|YP_267987.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144464|gb|AAZ24937.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 293

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 135/289 (46%), Gaps = 5/289 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSF+ AA     S S IS+ ++ LE  VG++L  R  R ++LT +G   +
Sbjct: 1   MVIFTQVVECGSFSGAAIATGHSNSYISKTLNKLEARVGVRLLNRTTRSISLTPEGQVYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++          L +S ++P G L+I+      +N LQ  +  F+  YP++ + L 
Sbjct: 61  EQCQQLVLDAHDAVSLLTQSHIEPKGVLKISCPTSFAENHLQEVMSAFMHQYPEVNLVLD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  D  D  IR    +  SSL+ RK+ +   +  A+  YLK    P S ++L 
Sbjct: 121 LNDRHVDLVQDGFDLVIRATDKLAESSLVCRKIYSCKAYTVASHDYLKRFGLPQSPEQLS 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I + +L       ++     D  +     + L  NS    +   + G GI  LP +
Sbjct: 181 EHQCICYSNLKQANKWIYSHSNGTDNQVEVK--AKLLCNSASMELAMVLAGHGICRLPAF 238

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +++    +  L  +  D ITP+  VY  YP     + K++ F + +  K
Sbjct: 239 VMEKELQDNKLAILFNDYITPTIDVYAIYPSRKHLSPKVRCFIDLLVDK 287


>gi|294676107|ref|YP_003576722.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294474927|gb|ADE84315.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB
           1003]
          Length = 302

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 110/296 (37%), Positives = 172/296 (58%), Gaps = 4/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +G  LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDALHLSQSAVSRQIRALEESLGTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   TS +  KL+     +++S  +  G+L++ TT+  G   L   L +    YPD+
Sbjct: 61  GELLFDATSTMAKKLDAAAARIRDSEEEVFGELKVTTTVGFGTMWLAPRLVKLYDRYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+ I M  YA P Y+     P  
Sbjct: 121 KIDLLLEERVLDLPMREADVAIRMKEPAQAD-LIRKRLINIRMRLYATPEYIARAGRPER 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+++ KH LI      P+         +V   +     S L VN+Y  ++Q  +   G+ 
Sbjct: 180 IEDMAKHRLICQNPATPQVQAGAQLTQSV---MAHGVPSTLMVNNYFGVLQGVLNHIGVG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LPDY+  D P L R++  V +    V+  YPE L+++ ++ AFR+F+  +   ++
Sbjct: 237 VLPDYLTADFPYLERVLPAVESVEVPVFLAYPEELRSSRRVNAFRDFVQEEILAYR 292


>gi|229589145|ref|YP_002871264.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361011|emb|CAY47873.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 301

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 135/300 (45%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + V+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R  +LT
Sbjct: 1   MDL-FQAMSVYVKVVEAGSMTAAAQACGMSTTMVGNHLRALEQRLGVSLLKRTTRKQSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           E G + ++   EV   +  ++    Q  S  P G LRI      G   L   L EF   Y
Sbjct: 60  EFGGQYYQRCLEVLGLVADSEQLAEQAHSDIPKGTLRITAPPVFGTERLTPALSEFSRRY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + ++L N+ +D+     D AIRL + +++SSLI R +    +   A+P YL     
Sbjct: 120 PQINLYVVLSNERMDLVDSGFDVAIRLGE-LETSSLIARPMQDYTLTLCASPAYLARRGT 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFN--WLATVD-RPIGEPRISCLQVNSYLSIMQYCV 236
           P S  EL +H+ + F         D    W  T D   +  P    L +NS   + Q  V
Sbjct: 179 PSSPAELQQHDCLAFAYPANDNWRDTEKLWRMTGDGGELEVPVSGSLTINSSQGLRQAAV 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI +L D +V+   ++  LV ++     PS  ++  Y +      KL+AF +F   K
Sbjct: 239 NGMGIIMLADALVQPDLESGKLVALLTTYKLPSRPMHLLYGQDRYRLPKLRAFVDFAMEK 298


>gi|89054666|ref|YP_510117.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864215|gb|ABD55092.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 304

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 111/296 (37%), Positives = 174/296 (58%), Gaps = 4/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVASAGSLTHAGDTLHLSQSAVSRQIRALEEGLDTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+     +++S  +  G+LR+ TTI  G   L   L      YPD+
Sbjct: 61  GELLFDATRHMTKRLDAASARIRDSEEEVFGELRVTTTIGFGSLWLAPRLPALYEKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+R+L+TI+M  YA P Y++    P S
Sbjct: 121 KIDLMLEERLLDLPMREADVAIRMKEPSQAD-LIRRRLMTINMRLYATPSYIEKHGMPDS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I  L  H LI+      +       +  +   +     S L VN+Y  ++Q  +   GI 
Sbjct: 180 IHALGNHRLISQNAAAAQVSAGAILVREL---LSYDVGSTLAVNNYFGVLQAVIHDLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LPDY+++D P+LVR++ +V +    V+  YPE L+ + +++ FR+F+  +   ++
Sbjct: 237 VLPDYLIQDFPDLVRVLPEVESAEVPVFLAYPEELRQSRRIEVFRDFVSEEVIAYR 292


>gi|28899928|ref|NP_799583.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838937|ref|ZP_01991604.1| transcriptional regulator [Vibrio parahaemolyticus AQ3810]
 gi|260363222|ref|ZP_05776091.1| transcriptional regulator [Vibrio parahaemolyticus K5030]
 gi|260880509|ref|ZP_05892864.1| transcriptional regulator [Vibrio parahaemolyticus AN-5034]
 gi|260898538|ref|ZP_05907034.1| transcriptional regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902235|ref|ZP_05910630.1| transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|28808211|dbj|BAC61416.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747608|gb|EDM58536.1| transcriptional regulator [Vibrio parahaemolyticus AQ3810]
 gi|308084979|gb|EFO34674.1| transcriptional regulator [Vibrio parahaemolyticus Peru-466]
 gi|308092319|gb|EFO42014.1| transcriptional regulator [Vibrio parahaemolyticus AN-5034]
 gi|308110467|gb|EFO48007.1| transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|308112030|gb|EFO49570.1| transcriptional regulator [Vibrio parahaemolyticus K5030]
 gi|328469915|gb|EGF40826.1| putative transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 289

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 145/294 (49%), Gaps = 11/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++L+E G
Sbjct: 3   NWEGVSEFVAVAETNSFTGAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G LR+   +  G+  L   L +FL  YP + 
Sbjct: 63  QLYYQQCKHLVEGLELAELAVTQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L N+ +D+     D AIRL + +Q SS+I ++L +   +  A+P YL+   EP ++
Sbjct: 123 LDLVLTNQKLDLIEQGVDVAIRLGR-LQDSSMIAKRLSSRQTYVCASPMYLERFGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H  +           D+       R         ++ NS  +++     G G+  
Sbjct: 182 SELGRHQCLV-------GSVDYWHFKENKRDKSLRVSGRIKCNSGFALVDAAKRGLGLVQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPDY V+   D+  LV ++ D       ++  YP++   + K++   +F+  + 
Sbjct: 235 LPDYYVQEALDSGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFLAQEL 288


>gi|163858793|ref|YP_001633091.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262521|emb|CAP44824.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 304

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 136/294 (46%), Gaps = 6/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LRVF  V + GSF  AA QL LS +++S+ I  LE  +G +L  R  R ++LTE GS
Sbjct: 4   LTALRVFRNVVQLGSFAQAARQLRLSPAAVSKNIGELEAHLGARLLQRTTRRMSLTEAGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   S +   L+     L      PSG LR++  + L  + L   +  FL  YPD+ +
Sbjct: 64  LYYEQISRILDDLDEAGRSLAPLQTGPSGVLRVSAPMSLTLSRLSAAIPAFLQAYPDLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +DI  +  D AIR    ++ SSL+ R L  +      AP Y +   EP + Q
Sbjct: 124 DLHLEDRRVDIIQEGYDLAIRGTDQLEDSSLVARPLTVLPHVLCGAPAYFQRHGEPDTPQ 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  HN + F          F       + +  P     QVNS L++      G G++L+
Sbjct: 184 ALRGHNCLRFTLSGHADEWTFR---RHGQTVRVPVRGRYQVNSSLAVRDALRAGFGLSLV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P   V+D+     L  ++ D       +Y  YP       K++AF +F+  + +
Sbjct: 241 PRTYVEDDLAQGRLRAVLNDWAMVDTYLYAVYPSRRHVAAKVRAFADFVRAELQ 294


>gi|254254764|ref|ZP_04948081.1| regulatory protein LysR [Burkholderia dolosa AUO158]
 gi|124899409|gb|EAY71252.1| regulatory protein LysR [Burkholderia dolosa AUO158]
          Length = 359

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 137/291 (47%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 53  TFLAVVTEGSFARAADRLGVGRSSVSRHVQKLEDRLDARLFQRTTRSMSLTREGELFYEN 112

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LRI +T   G+ ++   L++F   YPDI ++L+L
Sbjct: 113 CRPGIEHLAQALEDMRELRSGPPSGHLRIGSTPGFGRKIIAPLLRDFHAQYPDITLELLL 172

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++  D S D  D A R  + ++ S+++ R+L+ + M   A+P Y +    P  + EL +
Sbjct: 173 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAQRYGLPRHVDELAQ 231

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I       +  E   W   +D    + +++     N    +++  + G GIA LP Y
Sbjct: 232 HRCINLRTASGRVTE---WEFKIDGLAQQRQLAAHHTFNDMDLVVRAVLDGLGIAQLPAY 288

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V D   +  LV  +          Y CY        +++ F +++  + R
Sbjct: 289 QVCDLLADGKLVSCLGQYAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTR 339


>gi|227114220|ref|ZP_03827876.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 301

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 137/291 (47%), Gaps = 6/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  V  +GSF  AAE +H+  S+++R I  LE+ +G +LF R  R L++T+
Sbjct: 1   MDRFQAMEIFMRVVDAGSFKKAAETMHVLPSTVTRSIKELESHLGARLFNRTTRALSITD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +   +   +    +   +  G +RI  T  L +N L   L  F   YP 
Sbjct: 61  VGLRYYDSCKAILRDVHAAESVAAQQKEELHGTIRIGATPSLVKNFLIPALSGFCERYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++   L +  +DI  +  DC IR  +P   S L+ R+L   H +  A+P YL+    P 
Sbjct: 121 IKLDFHLGDATVDIVQNGIDCVIRTGEP-PLSRLVARRLGAFHWYICASPRYLEQHGHPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++ L+KH  + +          +++          P  + + VN   + +   V G G+
Sbjct: 180 TLESLNKHAAVGYTHSRTGRSTRWDFHDGA-HTAAMPIAAQISVNDTDAYVAAGVAGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +  Y+V     + +LVR++  +  P   ++  YP++   +  ++AF ++
Sbjct: 239 IRIASYMVHQQLADGHLVRLLPGISAPLEPIFILYPQSRHLSPAIRAFIDW 289


>gi|157149122|ref|YP_001456441.1| hypothetical protein CKO_04961 [Citrobacter koseri ATCC BAA-895]
 gi|157086327|gb|ABV16005.1| hypothetical protein CKO_04961 [Citrobacter koseri ATCC BAA-895]
          Length = 299

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 134/299 (44%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AAE   L + S+SRQI  LE  +G +L +R  R + LT+
Sbjct: 1   MDKIHAMQLFIRVAELESFSRAAETSGLPKGSVSRQIQALENHLGTQLLHRTTRRVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+      Q      SGKLR+   + + +NL+   L  FL  YP 
Sbjct: 61  DGMVYYERAKDLLTNLDELDGLFQHDPASISGKLRVDMPVGVAKNLVIPRLPAFLQQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+   ++ S LI R L  + +   A+P YL     P 
Sbjct: 121 IELELSSSDRLVDLIREGFDCVVRVGA-LKDSGLIARPLGKLSVINCASPQYLARFGYPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L  H ++ +   +    + F  +AT +          L VNS  +    C+ G GI
Sbjct: 180 GLDDLASHAVVHYSVNLGTRPQGFE-VATANGTQWIKTGGILTVNSTETYHAACLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ I+         V   YP     + ++  F  ++    +D+
Sbjct: 239 IQVPRIGVREALRAGTLIEILPQYRADPMPVSLLYPHRRNLSRRVHLFMEWLTGVMKDY 297


>gi|184158822|ref|YP_001847161.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|183210416|gb|ACC57814.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322507365|gb|ADX02819.1| Transcriptional regulator LysR family [Acinetobacter baumannii
           1656-2]
 gi|323518737|gb|ADX93118.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
          Length = 343

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 145/297 (48%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT
Sbjct: 1   MDL-FHAMRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  +  T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YP
Sbjct: 60  PDGAVYYDRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + + L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP
Sbjct: 120 DIDLVIGLNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEP 178

Query: 181 LSIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
            SI++L   H  I F     +   +F+W   VD  I    +   + VN   + +   + G
Sbjct: 179 TSIEDLQKNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI   P Y++    ++  L  ++         +   Y +    + K+K F +++  
Sbjct: 237 FGIIQGPRYMLTNHLESGLLKEVLPQWTPAPMPISAVYLQNRHLSLKVKVFVDWVAE 293


>gi|238028949|ref|YP_002913180.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878143|gb|ACR30476.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 352

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   YP 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  + + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       D  +     + +  N+   + Q+ +LG GI
Sbjct: 181 HPEHLMEHPSLSLPS---EYWGDERVFTGPDGEVRVRPTNVVVANNTEMLRQFALLGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AMLPSYLIGGDTARGKLVRLLPDYRLPQVEINVAYPSRRHLPAKVRTFIDHLVE 291


>gi|330896083|gb|EGH28304.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 298

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 139/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA +L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAVRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V+   ++  LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWGLYPQQRHLSPKVRKLVDYLKE 288


>gi|240949243|ref|ZP_04753587.1| LysR family transcriptional regulator [Actinobacillus minor NM305]
 gi|240296359|gb|EER47003.1| LysR family transcriptional regulator [Actinobacillus minor NM305]
          Length = 304

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 141/304 (46%), Gaps = 10/304 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D  + +R F  +   GSF+ A+E L +++++IS QI  LE  +G+ L +R  R +  
Sbjct: 1   MALDRLEAIRAFCRIVELGSFSKASEVLGVAKTTISGQIQALEERLGMTLLHRSTRRVYP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G+  +     +    +  +  +Q+      GK++I TT  LG NLL   L +FL  Y
Sbjct: 61  TTDGTAYYEQVKILLENFDDLENLIQD-KSTLRGKIKIETTAPLGSNLLIPALPDFLQKY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I++++    + +D+  +  DCA+R   P+    L+ + +  +     AAP YL N  E
Sbjct: 120 PEIRLEIRCSERAVDLIQEGVDCALR-GGPVTEPDLVCKPVGQMRFCLCAAPRYLNNAPE 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               ++L +H  I F   +   +  +  L   D          L  N+        + G 
Sbjct: 179 LSHPRDLAQHQYIGFRFPVTDKLHTYT-LKNGDEIYNVELSPYLTFNNADVYCNASLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLK 293
           GI  +P   V+   ++  LV ++ +  T S  +   YP + + + +++AF ++   +F  
Sbjct: 238 GIIAMPRASVQRYFESGELVEVLPNWQTSSMPISIVYPYSRRLSARVRAFVDWATSLFEN 297

Query: 294 ARDW 297
              W
Sbjct: 298 NPMW 301


>gi|167736554|ref|ZP_02409328.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
          Length = 340

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LR+   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLVEHPCLSLPS---EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|146310405|ref|YP_001175479.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145317281|gb|ABP59428.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 300

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 142/300 (47%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AA QL  + S+ISR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELVIFVAVVESGSFSRAAVQLGQANSAISRSVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    +  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSILQEMAAAETEIIETRSTPRGLLRIDAATPVVLHFLLPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EVSLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKMIASPSYIARYGNP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L +H  + F +  P  +  +    +  +P     IS L  NS  ++ Q C+ G+G
Sbjct: 180 TNVDDLKRHVCLGFTE--PVSLNTWPIAGSDGQP--HEIISGLSSNSGETLKQLCLSGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L DY++    +  +LV I+ D   P        Y      + +++AF +F+    + 
Sbjct: 236 IACLSDYMINKELEKGDLVEILADQRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVKQ 295


>gi|206575369|ref|YP_002235608.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206570574|gb|ACI12203.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 295

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT 
Sbjct: 1   MDRIQAMQVFIRVAEAGSFVRAAETLSLPSSTVTSTIKNLEKYLQVRLLNRTTRRVSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +      E+   +E T+  L + + +P G+LR+     +   ++  NLKEF   YPD
Sbjct: 61  EGLQYLAQCREILALVEHTEASLADLNRRPRGRLRVDMPGGIAHFIVMPNLKEFYSRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + + ++ +D+  +  DC IR  + + +S+L+ R L        A+P YL+    P 
Sbjct: 121 IYLMIGVSDRQVDLVQEGVDCVIRTGE-LINSTLVARPLGEFRWITCASPDYLREYGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L  H  I +     +  ++  ++   +  +         VN     ++ C+ G G+
Sbjct: 180 SPEDLSHHRAIHYFSGQSRRTDELRFVKGTE-TLSVSVSGQAAVNETGLYIKMCLEGFGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L + +V ++     LV ++ D   PS  V   YP     +  ++AF ++I
Sbjct: 239 AQLAENVVAEHLEKGTLVEVLADWQPPSVPVTLLYPHQRFLSPAVRAFADWI 290


>gi|206580017|ref|YP_002237030.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569075|gb|ACI10851.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 294

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT 
Sbjct: 1   MDRIQAMQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +      E+   +E ++  L ES  +P G+LR+     +   ++  +L +F   YPD
Sbjct: 61  EGMQYLAQCREILALIEHSESTLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + + ++ +D+  +  DC IR+ + + +SSL+ R L        A+P YL+    P 
Sbjct: 121 IYLMIGVSDRQVDLIQEGVDCVIRMGE-LNNSSLVARPLGCFRWVTCASPDYLREYGVPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L +H  + +     +  ++F ++         P      VN     ++ C+ G G+
Sbjct: 180 SPEALSQHRAVHYFSGQARRADEFRFVRH-GETFSVPVSGNAAVNETGLYIKMCLAGFGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A L + IV D+     LV ++ D   P   V   YP     +  ++AF  ++  
Sbjct: 239 AQLAENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWMSE 292


>gi|163858827|ref|YP_001633125.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262555|emb|CAP44858.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 352

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 152/296 (51%), Gaps = 8/296 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D +  ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L  R  R ++LT
Sbjct: 15  TMDRFQAMQVFVRVVDANSFTRAADSLALPRTTVTTAVQNLERRLGVRLLNRTTRRISLT 74

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  +  ++ +  ++E T+   QE++++P GKLRI     +G+ +L  +L EF   YP
Sbjct: 75  PDGAAYYEHSTRILAEVEETEACFQEAALRPKGKLRIDVPASIGRLILIPSLCEFHTRYP 134

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L + ++ +D+  +  DC IR    ++ SSL+ R++ T  +   AAP YL+    P
Sbjct: 135 DVELVLGMGDRRVDMVQEAVDCVIR-GGELEDSSLVARRIGTFQVLTCAAPSYLERQGMP 193

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            ++++L  H  + +     +   + NW   +D    E  +  C+ VN + + +   + G 
Sbjct: 194 HTLEDLKSHYAVHY--FSSRSGRNCNWDFVIDGKTREVDVPGCVSVNDWSAHLACALQGF 251

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+     ++      +  L+ ++         +   YP++ + + K++ F +++  
Sbjct: 252 GLVQTARFMALPHLQSGELIEVLPQWKPRPVPISLLYPQSRQLSPKVRVFSDWVAE 307


>gi|311280828|ref|YP_003943059.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308750023|gb|ADO49775.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 300

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 139/300 (46%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++ +F  V  SGSF+ AAEQL  + S++SR +  LE+++G+ L  R  R L+LT
Sbjct: 1   MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + EL E+   P G LR+     +  + L   ++ F   YP
Sbjct: 61  EEGERYFRRMQGVLQEMAAAENELMETRNTPRGLLRVDAATPVMLHFLMPLVRPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P YL     P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFNSYRKVIASPDYLAMHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  + F + +         LA  D  + E     L  NS  ++ Q C+ G+G
Sbjct: 180 QTADDLSAHLCLGFTEPVSLNTWP---LARYDGQLLEVECG-LTSNSGETLKQLCLNGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L DY+V    ++   V I+ D   P        Y      + +++AF +F+   A+ 
Sbjct: 236 IACLSDYMVDKEIESGEFVEILADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHAKQ 295


>gi|167834974|ref|ZP_02461857.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 351

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P+
Sbjct: 121 VIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPM 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLVEHPCLSLPS---EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|91786426|ref|YP_547378.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91695651|gb|ABE42480.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 307

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 149/304 (49%), Gaps = 13/304 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V  +GSF+  A+++  +QS+IS+Q++ LE E+G KL  R  R L+L+E
Sbjct: 1   MDKLSAMKTFVRVVEAGSFSAVADEMRATQSAISKQVAALEKELGTKLLIRTTRSLSLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +       +  ++   + +L++   + SG LR+A ++  G+  L   +K F+  +  
Sbjct: 61  EGERYFEQARRLVGEIAEAESDLRKGEGRLSGWLRVAASVGFGRLKLMPLVKAFMDTHAG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-- 179
           ++I L L +  ID+     D ++R+ + +  S LI R++ T      A   YL++  +  
Sbjct: 121 VKIDLRLHDGFIDLIEQGIDISVRIGE-LPDSGLIARRVGTSQRMLLAHRDYLRSLPKGV 179

Query: 180 --PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQ 233
             P++ ++L  HN + + +L  + +  F   A    P+G  +       +Q NS   I  
Sbjct: 180 KAPVNPEDLSNHNCVVYTELATRNLWAFEAGAGASEPLGTVKAVRVGGRIQTNSSEVIRS 239

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G GI   P ++ +       +VR+M D  +P   ++   P   K++ K+KAF   +
Sbjct: 240 AVTAGMGIGYSPTWLFESELARGEVVRVMPDWQSPHLPIHMVSPPERKHSAKVKAFVEHV 299

Query: 291 FLKA 294
            L+ 
Sbjct: 300 ALEL 303


>gi|94502092|ref|ZP_01308595.1| transcriptional regulator, LysR family protein [Oceanobacter sp.
           RED65]
 gi|94425765|gb|EAT10770.1| transcriptional regulator, LysR family protein [Oceanobacter sp.
           RED65]
          Length = 291

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 142/293 (48%), Gaps = 12/293 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   W+ +  F +VA  GSFT A++ L++S + +SR IS LE  +  KL YR  R +TLT
Sbjct: 1   MRI-WEGVVEFTLVAELGSFTKASQNLNISVAQVSRLISLLEKRLKTKLLYRTTRKVTLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++   +V ++LE  +  L     KP G +++   +  G+  +Q  + EF+ ++P
Sbjct: 60  AEGEIYYQRCKQVLNELEEAERALGNLQNKPQGTIKLTAPVMYGETFIQPLVHEFMRIHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++   L N+ +D+     D AIRL K ++ S+LI + L        A+P YLK+   P
Sbjct: 120 AIEVTANLSNQQLDLIDGGYDLAIRLGK-LKDSTLIAKPLSQRRYRVCASPSYLKDYGAP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL  HN +            +       + +    I  L  NS  +++   +   G
Sbjct: 179 HSLPELVDHNCLV-------GQHQYWRFEHKGKQVATKVIGTLSCNSGYALVDAALKNLG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  LP+Y V D+    +LV ++        T++  YP     + K++   NF+
Sbjct: 232 LIQLPNYYVDDHIEKGHLVEVLSKYREEPETIWAVYPHNRHLSPKVRQLVNFL 284


>gi|330936795|gb|EGH40952.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 298

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 139/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA +L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V+   ++  LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVWGLYPQQRHLSPKVRKLVDYLKE 288


>gi|115360997|ref|YP_778134.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286325|gb|ABI91800.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 304

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AAE LH+S++++++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMRAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVRLLNRTTRKINVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   + +   ++  +  L  +S  P G+LR+       + +L   L  FL  YPD
Sbjct: 61  DGIAYYERVTRLLADMDDAETSLSSASAAPRGRLRVDVPSPFARLILIPALPAFLARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +DI  +  DC +R  +P    S++ R++  + +   A+P YL     P 
Sbjct: 121 IQLDMGVSDRTVDIIGENVDCVVRGGEP-NDQSMVARRVADLSLGIVASPGYLALAGTPS 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              EL    H ++ F       +         +    + R   L V+   + +   V G 
Sbjct: 180 HPAELENSHHRIVGFSWGRAGKLYPLVMHRHGETVAVQGR-YALAVDDGNAYLAAGVAGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP Y+ K   +   LV + ED       +Y  YP     + KL+AF +++  
Sbjct: 239 GIMWLPHYMAKAHLERGELVTLFEDWQLDPMPLYIAYPPNRHVSAKLRAFIDWVVE 294


>gi|152986112|ref|YP_001349531.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961270|gb|ABR83295.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 304

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 131/293 (44%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + ++ F  V   GS + AAE++ LS+S IS+++S LE  +G++L YR  R +  T
Sbjct: 1   MSLRLEDIQAFLNVVELGSISAAAERMSLSKSVISKRVSDLERHLGVRLLYRSTRNVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++        L      +        G+LR+   +  G   L   + EF+   P
Sbjct: 61  EAGGFFYKSAKASVQDLNNAAESVALRENDLCGELRVMAPMSFGTLWLGPLVMEFMARNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L LD++ ID   +  D AIR+ + +Q SSLI R+L T       +P YL+     
Sbjct: 121 RLEVVLQLDDRIIDFEKEGYDLAIRITR-LQDSSLIARQLGTSRRVVCCSPEYLERHGAL 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++++  H  I +    P  +  F      +             N+  ++    V G G
Sbjct: 180 QRLEDILCHPCIGYSHNTPSQLWSFEPRVAGEPARMITPRGRFNTNNGQTMRDAAVRGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP +IV ++     LV  + +       +Y  Y  A   + K++ F  F+
Sbjct: 240 LAILPLFIVAEDLAAGRLVEALPEERPLDDLIYAMYSRAATLSPKVRLFVQFL 292


>gi|295676303|ref|YP_003604827.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436146|gb|ADG15316.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 302

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 131/293 (44%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D      VF  V   GSF  AA+ L  S ++++R ++ LE  +G +L  R +R L+LTE
Sbjct: 1   MDRLRAFEVFVTVVNRGSFARAADALETSPANVTRYVNDLEAHLGARLLNRTSRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   +  T+  +  +S++P G+LRI   +  G   L      F+  YPD
Sbjct: 61  AGETLYSRCKAILEDVAETEGLVSTTSIEPRGRLRINAPVSFGIQHLAPLWPRFMQQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L ++ +DI  +  D AIR+ +         RKL T      A+P YLK    P 
Sbjct: 121 VELDITLIDRVVDIVEEGFDLAIRISRAGTVDH-AARKLATSTNILCASPDYLKRWGHPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           +  +L  H  I +         D   L   D       +SC +  N+  +     + G G
Sbjct: 180 TPLDLLGHQCIGYTYA---ATADLWQLIDKDGKTHAVEVSCQMHTNNGDTARAAALAGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   P +++ ++     L+R++ D   P   V   YP     + K++A  +F+
Sbjct: 237 VIWQPTFLIGEDLRAGRLLRVLPDYRLPDIDVLALYPSRRHVSAKVRAAIDFL 289


>gi|330504498|ref|YP_004381367.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918784|gb|AEB59615.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 302

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 141/298 (47%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  GSF  AA+ L L  S+++  I  LE  + ++L  R  R ++LT 
Sbjct: 1   MDRIQAMQVFVRVAEVGSFIKAAQTLALPASTVTSSIKNLEKYLQVRLLNRTTRRVSLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+       E+   +E T+  L +S+ +P G+LR+     +   ++  NL++F   YP+
Sbjct: 61  EGACYLAQCREILTLIEHTESSLTDSAKRPQGRLRVDMPGGIAHFIVMPNLQDFYRRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + ++++ +D+  +  DC IR  + +  S+LI R L        A+  YL+    P 
Sbjct: 121 IYLMIGVNDRQVDLVQEGVDCVIRTGE-LNDSTLIARPLGHFRWVTCASKAYLRENGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  I +     + + D +  A     +  P      VN     ++ C+ G G+
Sbjct: 180 VPEDLSHHRAIHYFSGRTRRVGDMH-FARGSEKLSVPVKGTAAVNETGLYIKMCLEGFGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A L + IV +   +  LV ++ D   PS  V   YP     +  ++ F +++ +  RD
Sbjct: 239 AQLAERIVSEHLQDGRLVEVLPDWQPPSVPVNLLYPHQRFLSPAVRVFADWVSMLIRD 296


>gi|17989410|ref|NP_542043.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. 16M]
 gi|225628646|ref|ZP_03786680.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|260564324|ref|ZP_05834809.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M]
 gi|260568495|ref|ZP_05838964.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|17985286|gb|AAL54307.1| transcriptional regulatory protein, lysr family [Brucella
           melitensis bv. 1 str. 16M]
 gi|225616492|gb|EEH13540.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|260151967|gb|EEW87060.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M]
 gi|260155160|gb|EEW90241.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
          Length = 325

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LT
Sbjct: 20  MMSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALT 79

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 80  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 139

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P
Sbjct: 140 DLTVNMQLSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTP 198

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI       LQ NS   + +  + G G
Sbjct: 199 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPTGPLQTNSSEIVREAVLAGLG 252

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 253 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306


>gi|170698250|ref|ZP_02889327.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136831|gb|EDT05082.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 294

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 139/296 (46%), Gaps = 10/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVSTVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRIGA-LEDSTLIARPLGAWKMIACASPAYLKRQGTPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L  H  + +G           W   +D       +   L  N+   +    + G GI
Sbjct: 180 PADLAGHTCLLYGRE-----RRVGWEFRIDGAARTFDVQGPLVANNGEVVRDAAIAGLGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP +IV    D+  LV +++       T+   +P+  +    L+ F  F+  + 
Sbjct: 235 ALLPHFIVGAALDSGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFLAERL 290


>gi|293609592|ref|ZP_06691894.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828044|gb|EFF86407.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 343

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 145/297 (48%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  ++VF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT
Sbjct: 1   MDL-FHAMKVFNKVVETNSFSLAADSLGLPRASVTTTIQALERHLQVRLLNRTTRKISLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  +  T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YP
Sbjct: 60  PDGAVYYDRTARILADVSDIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + + L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP
Sbjct: 120 DIDLVIGLNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEP 178

Query: 181 LSIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
            SI++L   H  I F     +   +F+W   VD  I    +   + VN   + +   + G
Sbjct: 179 TSIEDLQKNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI   P Y++    ++  L  ++         +   Y +    + K+K F +++  
Sbjct: 237 FGIIQGPRYMLTNHLESGLLKEVLPQWTPAPMPISAVYLQNRHLSLKVKVFVDWVAE 293


>gi|306838503|ref|ZP_07471341.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|306406370|gb|EFM62611.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 325

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 128/294 (43%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  +  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LT
Sbjct: 20  MMSSLADMEIFARIVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALT 79

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 80  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 139

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P
Sbjct: 140 DLTVNMQLSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTP 198

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E  N       PI       LQ NS   + +  + G G
Sbjct: 199 QTIEDLQDHICLAPHNNDPWRLEGPN------GPIVIRPTGPLQTNSSEIVREAVLAGLG 252

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 253 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306


>gi|218245164|ref|YP_002370535.1| LysR family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|257058190|ref|YP_003136078.1| LysR family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|218165642|gb|ACK64379.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 8801]
 gi|256588356|gb|ACU99242.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 8802]
          Length = 297

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 134/291 (46%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F       SF+  A +   +Q +IS+QI+ LE ++G++L  R    L+LTE+G K +
Sbjct: 7   MQSFVRAIELNSFSAVAREQQTTQPTISKQIAALEKQLGVQLLIRSTTNLSLTEEGKKYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   +   +  L+    +  G LR+  ++  GQ  +   LK F+  YPD++I L+
Sbjct: 67  QYCQQILETVAEAEASLR-GKEQAIGILRLGCSVLFGQMQIVPRLKTFISRYPDVKIDLM 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  ++I  +  D  IR+   IQ +SLI  ++ T      A   Y +   EP + +EL 
Sbjct: 126 MADYFVNIVEEGLDLCIRIGN-IQDNSLISHRIGTTRRVTVATKRYFEQAGEPQTPEELV 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ I +  L       F      D  I        Q NS ++I    +   GIA++P +
Sbjct: 185 HHHCIVYTRLSTGNEWHFQ---GKDGIIKVQVGGQFQTNSSIAIRAAVLSDLGIAVVPVW 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  D     +L  ++ D    S  ++  Y  +     K+  F +F+  + +
Sbjct: 242 MFGDEINRGDLKVVLSDYQPTSLPIHAVYRRSRFYPAKITCFIDFLAEEFK 292


>gi|262395721|ref|YP_003287574.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262339315|gb|ACY53109.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 328

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 142/292 (48%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAEQL +S+S +SRQI+ LE ++G  L  R  R L LTE
Sbjct: 30  HINLADIRSFVLIAQLGNFTKAAEQLGVSRSHVSRQITNLEQQIGATLLQRTTRTLKLTE 89

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G  L++      H ++   + + +   +  G++RI      LG++++   + +FL+ +P
Sbjct: 90  AGKVLYKQCETALHNIDQAVMAVVDDVEELRGEIRINCVGGYLGEDVVADIVAQFLIQHP 149

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L   +  +D+  D  D A R+ K +  S+ I RKL+ + M  YA+P YL+    P
Sbjct: 150 QVNINLDFSSHRVDLIADEFDIAFRMGK-LDDSNFIARKLIDVEMGTYASPSYLETHGYP 208

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L+KH  +T G +     E+ N   + +  I       L+  S   +++  + G+G
Sbjct: 209 SHPKDLEKHICLT-GSVTRWAFENTNTKQSTEHQI----RGQLRCKSGRVMIKAALAGNG 263

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P    +       L  +  D   PS      Y        +++AF +F
Sbjct: 264 IIRVPALYCQQELQTGKLKEVFTDWSIPSVEFSLLYHHDRHQPKRIRAFIDF 315


>gi|206577520|ref|YP_002240310.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|290509921|ref|ZP_06549291.1| HTH-type transcriptional regulator yafC [Klebsiella sp. 1_1_55]
 gi|206566578|gb|ACI08354.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|289776637|gb|EFD84635.1| HTH-type transcriptional regulator yafC [Klebsiella sp. 1_1_55]
          Length = 301

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++ +F  V  SGSF+ AAEQL  + S++SR +  LE+++G+ L  R  R L+LT
Sbjct: 1   MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + +L E+   P G LR+     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRMQVVLQEMAAAENDLLETRTTPRGLLRVDAATPVMLHFLMPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIVASPDYVARYGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H+ + F + +        W  +          S +  NS  ++ Q C+ G+G
Sbjct: 180 QHPSDLKQHHCLGFTEPVSLN----TWPVSCCDGQLLEIESAVSSNSGETLKQLCLTGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L DY+V     +   V ++ D   P        Y      + +++AF +F+    + 
Sbjct: 236 IACLSDYMVDKEIASGEFVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVKQ 295


>gi|171322080|ref|ZP_02910949.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171092608|gb|EDT37915.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 294

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 139/296 (46%), Gaps = 10/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVSTVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRIGA-LEDSTLIARPLGAWKMIACASPAYLKRQGTPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L  H  + +G           W   +D       +   L  N+   +    + G GI
Sbjct: 180 PADLAAHTCLMYGRE-----RRVGWEFRIDGAARTFDVQGPLVANNGEVVRDAAIAGLGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP +IV    DN  LV +++       T+   +P+  +    L+ F  F+  + 
Sbjct: 235 ALLPHFIVGAALDNGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFLAERL 290


>gi|330959221|gb|EGH59481.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 298

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 137/293 (46%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA++L +S S +SRQI+ LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIARLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMGLYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N  +D+  +  D AIRL + +Q S  +  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNDTLDLVHEGMDLAIRLGR-LQDSRRVATRLAPRQMYLCASPSYIQRYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELSRHNCLIGGS-------DTWLLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PDY V+    +  LV ++E    P+  V+  YP+    + K++   +++    
Sbjct: 238 PDYYVQKHLKDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKEAL 290


>gi|190890513|ref|YP_001977055.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695792|gb|ACE89877.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 298

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  V  +GS + A   L  S + +S++I  LE  +G +L  R  R ++LTE G
Sbjct: 3   NLGDLEIFAKVVSTGSMSLAGRMLGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   LE  +  +   S +  G L+++     G+  +  +LK F+  +PD+ 
Sbjct: 63  QGFYDRVLGILAGLEEAEFYISGRSAQMHGTLKVSAPTSFGRMHIAPHLKAFMQAHPDLA 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L ++  DI     D AIR+ + +  SSL+ R+L  +     A+P YL    EP  I
Sbjct: 123 INLVLTDEFSDIIGGGFDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLAAHGEPRDI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +      P    D   L   +  +       L  NS   I +  + G GIAL
Sbjct: 182 DDLKHHRCL------PAHNGDAWRLTGPEGALSLRPEGMLITNSSEVIREAVISGLGIAL 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
              + + +      L++++         T+   YP       K++ F +++  
Sbjct: 236 RSTWDIGEELKAGRLLQVLPAYEGSHNVTLSAVYPSRQFLPAKVRLFIDYLTE 288


>gi|330819631|ref|YP_004348493.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327371626|gb|AEA62981.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 336

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 143/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L L ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDTNSFTKAAETLSLPRASVTTIIQNLEAFLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  ++E T+   Q ++ KP GKLR+     LG+ ++   L EF   YPD
Sbjct: 61  DGAAYYERCVRILAEVEETEASFQINNRKPHGKLRVDMPGSLGRLVVIPALNEFRDRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL L ++ +D+  +  DC IR+   +Q SSL+ R++        A+  YL+   EP 
Sbjct: 121 IDLQLGLSDRPVDLLQEGVDCVIRVGA-LQDSSLVARRVGLFEGVTVASRAYLERYGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           SI +L  H  + +     +   + +W   +D    E ++ S + VN   + +   + G G
Sbjct: 180 SIDDLADHRAVNY--FSSRTGRNIDWAFLIDGQEVEVKMESVVSVNDADAYVTCGIEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P ++V     +  L  ++         +   YP +   + K++ F +++  
Sbjct: 238 LIQPPLFMVLPQLRSGELKEVLTGYKPLPMPISVVYPHSRHLSPKVRVFVDWVAE 292


>gi|170691790|ref|ZP_02882954.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143074|gb|EDT11238.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 299

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F     + SF  AA +L LS S++ + +  LET +G++L  R  R +++TE G
Sbjct: 3   NLTGIVAFVHTVEAQSFVGAARRLGLSASAVGKSVVRLETRLGVRLLQRSTRRVSVTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +   L   +  + +++  P G+LR+     +G   L   + EF+  YPD++
Sbjct: 63  ERFYERCRRILDALTDAETMMLQANAAPRGRLRVTLP-TIGYRFLLPVVPEFMQRYPDVE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  +++ +D+     D AIR    +  S L  R+L        A P Y      P   
Sbjct: 122 LELDFNDRIVDVIAGGFDAAIRSGD-LADSQLTARRLGPFRFVLCATPAYFAQHGVPRVP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I F       + D+ +       +     + L  N+  ++    VLG GI  
Sbjct: 181 ADLARHACIRFRFPTTGKLHDWQFRDQPANFVASFP-TVLTCNNMEALRGATVLGLGIGY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++V+D+     L  +++  +         +P + + + KL+ F +F+  + 
Sbjct: 240 MPDFLVRDDLAAGTLRTVLDAHLKHEGQFSVLWPSSRQLSPKLRVFVDFLAERL 293


>gi|169795311|ref|YP_001713104.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|169148238|emb|CAM86101.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
          Length = 345

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 146/298 (48%), Gaps = 9/298 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D +  +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++L
Sbjct: 1   MRVDLFHAMRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G+  +  T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   Y
Sbjct: 61  TPDGAVYYDRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI + + L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   E
Sbjct: 121 PDIDLVIGLNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGE 179

Query: 180 PLSIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVL 237
           P SI++L   H  I F     +   +F+W   VD  I    +   + VN   + +   + 
Sbjct: 180 PTSIEDLQKNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQ 237

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI   P Y++    ++  L  ++         +   Y +    + K+K F +++  
Sbjct: 238 GFGIIQGPRYMLTNHLESGLLKEVLPRWTPAPMPISAVYLQNRHLSLKVKVFVDWVAE 295


>gi|77458663|ref|YP_348169.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382666|gb|ABA74179.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 298

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 139/290 (47%), Gaps = 5/290 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V  SGSFT AA+ L+L ++++S+ I  LE  +G++L  R  R LT+T  G+  
Sbjct: 6   AIRTFARVVESGSFTKAADSLNLPKTTVSKLIGQLENHLGVRLLQRTTRRLTVTADGASY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +++T ++ H+L+       ++   P GK+R+         L+   L +F   YPDIQ+ L
Sbjct: 66  YQLTQQLLHQLDDIDQGFSQAQGLPRGKIRVDIGGSTATMLVIPELPKFFERYPDIQVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+  +  DC IR   P+   +L  R+L  +     A P YL+    P    +L
Sbjct: 126 GVSDRPVDLISERVDCVIR-GGPLTEQTLAVRRLGEVSWTTCATPDYLQRHGTPSHPLDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H LI +       +   N+    +R   E +   + VN   + +   + G GI     
Sbjct: 185 ASHQLIAYRSASTGRILPSNFQRNGERHQIEGK-GLISVNESNAHLAAGLAGLGIIHTFS 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y V+   +   LV I+ED   P++  +  YP     + +++ F +++  +
Sbjct: 244 YTVRTAIERGELVPILEDWRPPAYPFHVLYPPNRHLSNRVRVFIDWLVER 293


>gi|149203317|ref|ZP_01880287.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
 gi|149143150|gb|EDM31189.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
          Length = 301

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 136/298 (45%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L +FL  +PD
Sbjct: 61  IGLAYYDRALRVLNDAGEADALVSSMQSDPSGLLRISVATDFGVNHLSPVLGQFLDEFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPGYFQKHGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ +       +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNEHKLLHYSSQAGGAVWKLTAPSGEKRQVRT--AGGLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP ++      +  +   M ++      +Y  YP       K++AF +F+  +  D
Sbjct: 238 AYLPSFLYSRAMADGLVEDAMPELPLELQGIYAVYPPGRFTQPKVRAFIDFLVHQFAD 295


>gi|319794019|ref|YP_004155659.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596482|gb|ADU37548.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 304

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 144/299 (48%), Gaps = 10/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  V  +G+FT AA+ L L + ++++QI  LE+ + +KL  R  R +T+T 
Sbjct: 1   MDQIQAMRIFVRVVEAGTFTRAADSLALPKGTVTKQIQALESRLRVKLLNRTTRRVTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+      + + +  +  +  +  +   P+G+LRI     + + ++  NL  F   YPD
Sbjct: 61  DGAAYFERAARLLNDFDDMEASMTNAQASPTGRLRIDVGTSVARQIILPNLASFCDRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L + ++ +D+  D  DC IR  + +   SL+ R++ T+H    A+P Y+K    P 
Sbjct: 121 IQVDLGVSDRTVDLISDNVDCVIRAGE-LSDQSLVARRIGTLHFVTVASPAYIKRYGTPA 179

Query: 182 SIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +++ +H ++++     + +    +    +R I       + VN   + M   + G G
Sbjct: 180 HPNDIEKRHTVVSYFSGTTRRIYPHEFHKGDER-IELNGPYRVSVNESNAHMAAVLGGFG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLK 293
           I+    ++     ++  LV ++ D       ++  YP     + K++AF ++   +F K
Sbjct: 239 ISQCITFMADPHLESGELVEVLADWSRDPLPIHVVYPPNRHLSAKVRAFVDWAADLFAK 297


>gi|269104470|ref|ZP_06157166.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161110|gb|EEZ39607.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 308

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 138/298 (46%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +   ++   +FT AA++L +S+S +S+QI  LE  +G +L  R  R + LT
Sbjct: 1   MLENLHQMVILATISHEQNFTRAADRLGISKSQVSKQIRLLEERLGCQLVQRSTRTVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   +   +  +     +  G LRI      G + +   L EF  L+P
Sbjct: 61  EIGLQYAEYGQQLLDTVNEAEAMVAGYRNEVKGVLRIGIAQSFGNHQITPALAEFQQLHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++++ L +   ++  +  DC I + +      ++ R+L   H    A+P Y+    +P
Sbjct: 121 ELELEISLFDHRPNLLEEGFDCWIAIHEH-PPEGMVARRLANCHFMVVASPEYIAQHGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            +  +L +HN IT+     K +   NW  T D      R     ++++  +++   V G 
Sbjct: 180 ETPGDLRRHNCITYQSRERKYV---NWEFTRDGIHQSIRARGTYRIDNAPAVLDATVSGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIA L  Y++ D      L++++ +        +Y  YP       K+++F +F+  +
Sbjct: 237 GIAYLSTYLLTDEIEKGKLIQLLPEWKADLELPIYAVYPRRKYLAPKVRSFIDFMSER 294


>gi|254453047|ref|ZP_05066484.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198267453|gb|EDY91723.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 309

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/289 (36%), Positives = 168/289 (58%), Gaps = 4/289 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+ VA +GS T A ++LHLSQS++SRQI  LE  +   LF+RHARGL LTE
Sbjct: 6   PMDWDKLRIFHAVADAGSLTAAGDKLHLSQSAVSRQIRALEESLSTILFHRHARGLILTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L   T  +  +L+     +++S+ +  G+L++ TT   G   L   L      YPD
Sbjct: 66  QGELLFDATKSMSRRLDAASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPD 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L+L+ + +D+ M  AD AIR+++P Q+  L+++KL+T+ M  YA+  YL       
Sbjct: 126 LNIDLMLEERVLDLPMREADVAIRMKEPSQAD-LVRKKLMTVRMRLYASQAYLDKVGGFD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I+++ +H LI      P   +       V   +   + S L VN+Y  ++Q  +   GI
Sbjct: 185 EIEDIGRHRLIC---QSPSAFQVAAGATLVGHLLSYDKPSLLHVNNYFGVLQAVLSDLGI 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPDY+++D P LVR++ +V +    V+  YPE L+ + ++ AFR+F+
Sbjct: 242 GVLPDYVIEDFPTLVRVLPEVESGEVPVFLAYPEELRQSKRIMAFRDFV 290


>gi|311277552|ref|YP_003939783.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308746747|gb|ADO46499.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 299

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 132/293 (45%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+ L L + S+SRQI  LE  +GI+L +R  R + LT+
Sbjct: 1   MDKIHAMQLFIRVAELESFSRAADTLGLPKGSVSRQIQALENHLGIRLLHRTTRRVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+      Q      SG+LR+   + + +NL+   L  FL  YP 
Sbjct: 61  DGMVYYERAKDLLSNLDELDGMFQHDPSSISGRLRVDMPVAVAKNLVIPKLPAFLQQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+   ++ S L+ R+L  + +   A+  YL     P 
Sbjct: 121 IELELSSSDRLVDVIREGFDCVVRVGA-LKDSGLVARQLGKLTIINCASQGYLARFGYPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L  H LI +   I    + F     VD  +   +    L VNS  +    C+ G G
Sbjct: 180 RPDDLAGHALIHYSANIGVRPQGFE--MKVDNAVRWVKTGGVLTVNSTETYQAACLAGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   P   V+D   +  LV I+         V   YP     + ++  F  ++
Sbjct: 238 IIQAPRIGVRDALRSGQLVEILPQYRAEPMPVSLIYPHRRNLSRRVHLFMEWL 290


>gi|167908981|ref|ZP_02496072.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
          Length = 343

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LR+   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLVEHPCLSLPS---EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|167616873|ref|ZP_02385504.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 299

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +T+ 
Sbjct: 1   MQFDDLRIFVTTVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTDL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +R  + +   +  T+  +        G L+I+  +  G   L   + EFL+ +P +
Sbjct: 61  GHEFYRRATRILADVAETEEAMSARHGDLRGTLKISAPMSFGIAYLSPLIAEFLVRHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y +  R P +
Sbjct: 121 RLHVDLSDRHVDLIGEGFDLALRIGA-LPDSTLIARRLGELRMVACCSPAYRRKHRAPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  + +G       E                   L  N+   I    + G GIA
Sbjct: 180 PADLHGHACLLYGQEGRTGWE----FTIGGARRTFEVQGALLANNGDVIRDAAIAGLGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LLP +IV    D   LV ++E        V   YP+  ++    +AF  FI  + R 
Sbjct: 236 LLPHFIVAAALDAGLLVTVLEPFAQSPLPVSAVYPQHRQDMATCRAFLGFIEERLRQ 292


>gi|296101372|ref|YP_003611518.1| hypothetical protein ECL_01006 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055831|gb|ADF60569.1| hypothetical protein ECL_01006 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 301

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL  + S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELTIFVAVVESGSFSRAAEQLGQANSAVSRSVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + E+ E+   P G LRI     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRVQSVLQEMAAAETEIMETRSTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L   +    A+P Y+    +P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFASYRKIIASPQYIAEHGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +H  + F + +        W               L  NS  ++ Q C+ G+G
Sbjct: 180 ETVEELKQHLCLGFTEPVSLN----TWPVACPDGQLHEITCGLSSNSGETLKQLCLEGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++       +LV +M D   P        Y      + +++AF +F+    +
Sbjct: 236 IACLSDYMIDKEIARGDLVELMADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHIK 294


>gi|221212117|ref|ZP_03585095.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168202|gb|EEE00671.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 294

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDVIGEGFDLVLRIGA-LEDSTLIARALGAWKMIACASPAYLKRHGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H  + +G       E          P        L  N+   +    + G GIA
Sbjct: 180 PAELANHTCLLYGRERRVGWE----FRVDGAPRTFDVQGPLVANNGEVVRDAAIAGLGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP +IV    D   LV +++       T+   +P+  +    L+ F  F+  + 
Sbjct: 236 LLPSFIVGAALDGGTLVPVLDAYAPAPITLNAVFPQHREGFVTLRTFIGFLAERL 290


>gi|238790140|ref|ZP_04633917.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           frederiksenii ATCC 33641]
 gi|238721809|gb|EEQ13472.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           frederiksenii ATCC 33641]
          Length = 300

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/298 (29%), Positives = 148/298 (49%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V   GSF+ AAEQL  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTVKRLEGKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +   + T + EL +S + P G LRI  +  +  ++L   + EF   YP
Sbjct: 61  QEGEHYFRRVQNILRDMATAENELLDSQLNPKGLLRIDASTPVVLHVLAPLMAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  RKL+T + H  A+P YL+    P
Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRVG-TLQDSTLRARKLMTSYRHLLASPAYLRQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H  + F DL          LA  D  + E   S L  N+  +  + C+ G+G
Sbjct: 180 QTVADLQHHVCLGFIDLPVLNRWP---LAGPDGQLYEI-TSDLTSNNGETQRRLCLEGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++++ +    +LV I+E+   P +  +   Y      + +L+ F +FI  + 
Sbjct: 236 IACLSDFMIQQDLQRGDLVPILEEHTLPVAMPINAVYYSDQAVSNRLRCFIDFINERL 293


>gi|261342001|ref|ZP_05969859.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315916|gb|EFC54854.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 299

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 130/294 (44%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AAE L L + S+SRQI  LE ++G +L +R  R ++LT+
Sbjct: 1   MDKIHAMQLFLRVAELESFSRAAETLSLPKGSVSRQIQALENQLGTQLLHRTTRRVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+      Q      SG+LR+   + + +NL+   L  FL  YP 
Sbjct: 61  DGMVYYERAKDLLTNLDELDGMFQHDPSSISGRLRVDMPVGVARNLVIPKLPAFLQQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+   ++ S LI R L  + +   A+P YL     P 
Sbjct: 121 IELELSSSDRLVDVIREGFDCVVRVGA-LKDSGLIARPLGKLSVINCASPDYLTRFGYPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H +I +   +    + F                 L VNS  +    C+ G GI
Sbjct: 180 TLDDLASHAVIHYSATLGTRPQGFE-FYNGSTTQWVKTGGVLTVNSTETYQAACIAGLGI 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P   V+D      L  I+         V   YP     + ++  F  ++  
Sbjct: 239 IQVPRVGVRDALRARKLTEILPQYRAEPMPVSLIYPHRRNLSRRVHLFMEWLTE 292


>gi|261822987|ref|YP_003261093.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261607000|gb|ACX89486.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 298

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 147/296 (49%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +   VF  VA + SF  A   L +S S++ + ++ LE ++G++LF+R  R +TLT 
Sbjct: 1   MDSLNGFVVFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSITLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS     +  +  ++E  ++EL +++  P G+LR++    L  +L+   L EF+  YP+
Sbjct: 61  EGSLFLARSRRILAEIEAAELELSQTNAVPRGRLRVSLP--LVSSLVLPVLGEFMREYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++ +D+  +  D  +R   P+  S L  R+L T      A+P YL     P 
Sbjct: 119 IELDLDFTDRMVDVIEEGFDAVVRTGNPV-DSRLTARRLGTFGFLLVASPDYLARHGTPK 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  + +       +E +      + P   P  + +  N+  + + + + G GI
Sbjct: 178 TPADLMQHACLHYRFPNSGKLEPWALRLAPNGPEL-PLPTSMICNNIETRVCFALQGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LPD+ +++      L  I+ D +  S  ++  +P +   + K++A  +F+  + 
Sbjct: 237 AYLPDFSIRELLAKGLLQPILNDYVERSGVLHVLWPASKHPSPKVRALVDFLCARV 292


>gi|237800167|ref|ZP_04588628.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023024|gb|EGI03081.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 298

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 137/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA +L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPQLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S ++  ++    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRMVATRIAPRKMYVCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELGRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGIGLCQL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V+    +  LV +++    P+  V+  YP+    + K++   +++  
Sbjct: 238 PDYYVQRHLKDGTLVSLLDTHQPPNTAVWALYPQQRHLSPKVRKLVDYLKE 288


>gi|85703828|ref|ZP_01034931.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
 gi|85671148|gb|EAQ26006.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
          Length = 301

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAARKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L  FL  +PD
Sbjct: 61  IGLAYYDRALRVLNDAGEADALVSSMQSDPSGLLRISVATDFGVNHLSPVLGTFLDEFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P+Y +    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPNYFEKYGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ +       +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNEHKLLHYSSQAGGAVWKLTAPSGEKRQVRT--AGGLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP ++      +  +   M D+      +Y  YP       K++AF +F+  +  D
Sbjct: 238 AYLPSFLYSRAMADGLIEDAMPDLPLELQGIYAVYPPGRFTQPKVRAFIDFLVHQFAD 295


>gi|187926772|ref|YP_001893117.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241665102|ref|YP_002983461.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728526|gb|ACD29690.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240867129|gb|ACS64789.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 299

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 143/292 (48%), Gaps = 6/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D++  F  V  +GS T AAE++ + +S++SR+++ LE  +  +L  R   GL++TE G 
Sbjct: 4   LDEIMTFVEVVNAGSITKAAERMGIVKSAVSRRLNDLEDRLKARLLVRSTAGLSVTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H     +  +L+  ++ + ++S   SG + ++  + L   +L  ++  FL L+P + +
Sbjct: 64  AFHERARRIIAELDEAELTVTDASADLSGTIHMSAPVSLTNLVLMPHICAFLRLHPGLTL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +DI  +  D AIR    +  S L+ RKL  +     A+P YL +   PL+ Q
Sbjct: 124 DLSLSDRFVDIVNEGFDIAIRAG-TLSDSRLVARKLTDMRRVTCASPDYLASRGTPLTPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD H+ +   +        +++ A           + ++ N+  +++   V G GIA +
Sbjct: 183 DLDHHDGLVSTNAPESTY--WHYTAPDGETYLARPNTRMKANNGEAVITAAVAGLGIAAV 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P +I  +      L+ ++ D    + ++Y  YP     + +++   + +  +
Sbjct: 241 PAFISTELIAQGALIPVLSDYRLAAGSLYAIYPPGRHLSHRVRVLIDCLVER 292


>gi|146313550|ref|YP_001178624.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145320426|gb|ABP62573.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 299

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+ L L + S+SRQI  LE  +G +L +R  R ++LT+
Sbjct: 1   MDKIHAMQLFIRVAELESFSRAADTLGLPKGSVSRQIQALENLLGTQLLHRTTRRVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+      Q      SG+LR+   + + +NL+   L  FL  YP 
Sbjct: 61  DGMVYYERAKDLLANLDELDGLFQSDPTSISGRLRVDMPVGVARNLVIPKLPSFLQQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+   ++ S LI R L  + +   A+P YL     P 
Sbjct: 121 IELELSSSDRLVDVIREGFDCVVRVG-TLKDSGLIARTLGKLSIINCASPDYLARFGYPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H +I +   +    + F      D  +       L VNS  +    C+ G GI
Sbjct: 180 NLDDLASHAVIHYAVNLGTRPQGFE-FFNGDTTLWVKTGGILTVNSTETYHAACLAGLGI 238

Query: 242 ALLPDYIVKDNPNL---VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++       V I+         V   YP     + ++  F  ++
Sbjct: 239 IQVPRVGVREALRAKKMVEILPQYRAEPMPVSLIYPHRRNLSRRVHLFMEWL 290


>gi|56698414|ref|YP_168787.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56680151|gb|AAV96817.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 301

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 136/298 (45%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFANVVDQGGFTDAAKKMGISKSAVSKHVSSLEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L +FL  +PD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQSAPSGLLRISVATDFGVNHLSPVLSDFLAEFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ S+L  RKL        A+P Y +    P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAVRIGE-LEDSTLRARKLTETTKRMIASPKYFEKYGHPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L++H L+ +       +      +   R +       L VN   S++   + G GI
Sbjct: 180 KIDDLNEHKLLHYSSQASGNVWKLTAPSGEKRQVRT--AGWLSVNDGQSLLNAAISGLGI 237

Query: 242 ALLPDYIVKD--NPNLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A LP Y+  +     LV   M  +      +Y  YP       K++AF +F+     D
Sbjct: 238 AYLPCYLFAEAMEQGLVEDAMPSLPDEVQGIYAVYPPGRFTQPKVRAFIDFLVHSFAD 295


>gi|253689926|ref|YP_003019116.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756504|gb|ACT14580.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 298

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 145/296 (48%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +   VF  VA + SF  A   L +S S++ + ++ LE ++G++LF+R  R +TLT 
Sbjct: 1   MDSLNGFMVFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSITLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS     +  +  ++E  ++EL ++   P G+LR++    L  +L+   L EF+  YP+
Sbjct: 61  EGSLFLARSRRILAEIEAAELELSQTKAVPRGRLRVSLP--LVSSLVLPVLGEFMREYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++ +D+  +  D  +R   P+  S L  R+L T      AAP YL     P 
Sbjct: 119 IELDLDFTDRMVDVIEEGFDAVVRTGDPV-DSRLTARRLGTFRFLVVAAPDYLARYGCPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  + +       +E +  L         P  + +  N+  + + + + G GI
Sbjct: 178 TPADLMQHACLHYRFPNSGKLEPWA-LRLPPGEPELPLPTSMICNNIETRVCFALQGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LPD+ +++      L  I+ D +  S   +  +P +   + K++AF +F+  + 
Sbjct: 237 AYLPDFSIREQLAGGQLQPILTDYVERSGVFHVLWPASKHPSPKVRAFVDFLCARV 292


>gi|53717758|ref|YP_106744.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|53724669|ref|YP_101978.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67642449|ref|ZP_00441205.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|76808955|ref|YP_331757.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121599020|ref|YP_994106.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124385694|ref|YP_001028233.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126440879|ref|YP_001057199.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126449285|ref|YP_001081874.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126451470|ref|YP_001064437.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134284075|ref|ZP_01770769.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167003299|ref|ZP_02269088.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167813628|ref|ZP_02445308.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167822172|ref|ZP_02453643.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167843763|ref|ZP_02469271.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167900758|ref|ZP_02487963.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167917024|ref|ZP_02504115.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217425029|ref|ZP_03456525.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226194650|ref|ZP_03790245.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237810333|ref|YP_002894784.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242314449|ref|ZP_04813465.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254176788|ref|ZP_04883445.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254182258|ref|ZP_04888855.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254188224|ref|ZP_04894736.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254197080|ref|ZP_04903503.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254203658|ref|ZP_04910018.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254208633|ref|ZP_04914981.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254260212|ref|ZP_04951266.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254295700|ref|ZP_04963157.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254360312|ref|ZP_04976582.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52208172|emb|CAH34103.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|52428092|gb|AAU48685.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76578408|gb|ABA47883.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei 1710b]
 gi|121227830|gb|ABM50348.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124293714|gb|ABN02983.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126220372|gb|ABN83878.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126225112|gb|ABN88652.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126242155|gb|ABO05248.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134244527|gb|EBA44631.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147745170|gb|EDK52250.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147750509|gb|EDK57578.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148029552|gb|EDK87457.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157806013|gb|EDO83183.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157935904|gb|EDO91574.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160697829|gb|EDP87799.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169653822|gb|EDS86515.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184212796|gb|EDU09839.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217392049|gb|EEC32075.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225933351|gb|EEH29343.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505039|gb|ACQ97357.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238523604|gb|EEP87041.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242137688|gb|EES24090.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243061155|gb|EES43341.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254218901|gb|EET08285.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 351

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LR+   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLVEHPCLSLPS---EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|170723221|ref|YP_001750909.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169761224|gb|ACA74540.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 298

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 143/291 (49%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA SG FT AAE++ +S S ISRQI+ LE  +  +L YR  R +TL+E G 
Sbjct: 5   WEGIDEFVAVAESGQFTAAAERMGVSSSHISRQIARLEERLQTRLLYRSTRRVTLSEAGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 65  TFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYPQLRV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L N+ +D+  +  D AIRL + +  S L+  +L    M+  A+P YL+    P S+ 
Sbjct: 125 EVELSNRTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLERYGRPHSLS 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +           D   L    R I +      + NS  +++   +LG G+  L
Sbjct: 184 ELARHNCLV-------GSSDLWALQQDGREISQRVQGNWRCNSGQAVLDAALLGMGLCQL 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V ++     LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 237 PDYYVLEHLNSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRRLVDYLKE 287


>gi|170736993|ref|YP_001778253.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819181|gb|ACA93763.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 331

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 28  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 87

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LR+ +T   G+ ++   L++F   YPDI + L+L
Sbjct: 88  CRPGIEHLAQALEDMRELRSGPPSGHLRVGSTPGFGRKVIAPLLRDFHAQYPDITLDLLL 147

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++  D S D  D A R  + ++ S+++ R+L+ + M   A+P Y      P  + +L +
Sbjct: 148 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAHRHGLPRHVDDLAR 206

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I       +  E   W   +D    + +++     N    +++  + G GIA LP Y
Sbjct: 207 HRCINLCTASGRVTE---WEFRIDGVTQQRQLTAHHTFNDIDLVVRAALDGLGIAQLPAY 263

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V D   +  LV  +          Y CY        +++ F +++  + R
Sbjct: 264 QVCDLLADGRLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTR 314


>gi|114327474|ref|YP_744631.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315648|gb|ABI61708.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 316

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 134/300 (44%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +++F  V   GSF+ AA    +  S+ISR I+ LE  +G+ LF+R  R + LT
Sbjct: 1   MDM-LATMQMFVRVVEFGSFSRAAGVTGVHISAISRGIASLEENLGVDLFHRSTRRVHLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++    V  ++E  +         P G LR+A      +  +  ++ EFL  YP
Sbjct: 60  EPGRIFYQHARSVLREVEEARAAASAQQGHPQGLLRLALPDAFARLHIVPHMPEFLATYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ +   +  +D+    AD AIR+  P+  SSLI RKL        A+P YL +    
Sbjct: 120 DIRLDMSFSDVRVDLIATGADAAIRIG-PLLDSSLIARKLAPHRRVICASPDYLDHRPAI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +HN + +   +      F         +  P    ++ +    +    + G G
Sbjct: 179 RHPEDLVQHNCLIYS--LQPSGNWFFHHPISGEEVAVPVRGSIRADDSEPLRGCALSGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I LLP ++V ++     L  ++ D      T    ++  YP   +   K++AF +F+  +
Sbjct: 237 IVLLPTWLVGNDLRSGRLSPVLPDWNAMIATQPSGIFGLYPPHRQVPPKIRAFLDFLQTR 296


>gi|152984517|ref|YP_001348180.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959675|gb|ABR81700.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 304

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  +D +  F  VA   S T AAE++ LS+S IS+++S LE  +G++L YR  R +  T
Sbjct: 1   MSLRFDDIEAFLNVAELNSVTSAAERMSLSKSVISKRVSDLEKRLGVRLLYRTTRNVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++       +L      +        G+LRI T +  G   L   + +F+  +P
Sbjct: 61  EAGHFFYKAAKASLQELNNAAEIVALRENDLCGELRIVTPMSFGTLWLSPIIADFMSQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L +D++  D   +  D +IR+ + +  SSLI R L         +P Y +     
Sbjct: 121 RLEIVLQMDDRLTDFEKEGYDLSIRVTR-LDDSSLIARPLANSQRVVCCSPDYAQRHGSV 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L +H  + + +  P  +  F      D+P           N+  ++    + G G
Sbjct: 180 ETLEQLMQHECLGYNNASPSQVWTFEPAYPGDKPRAISPRGRFNSNNGQAMRDAALRGQG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +ALLP +IV ++     LV     +      +Y  Y  A   + K+KAF   +
Sbjct: 240 LALLPLFIVAEDLGSGRLVDAAPGLRPLDDVIYAMYSRAAAMSPKVKAFIQHL 292


>gi|91795113|ref|YP_564764.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91717115|gb|ABE57041.1| transcriptional regulator, LysR family [Shewanella denitrificans
           OS217]
          Length = 290

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 136/290 (46%), Gaps = 13/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA + SFT A ++L +S + +SRQ+S LE  +  KLFYR  R + LTE+
Sbjct: 2   MQWEGISEFVAVAETESFTAAGKRLSISTAQVSRQVSQLEDRLSTKLFYRTTRKVALTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  +R   +V + L+  +  +     KP G +++   +  G+  +   +  F+  YP +
Sbjct: 62  GAVYYRHCRQVLNGLDDAERAISSLKDKPQGLIKMTAPVTYGETHIMPIVIAFMAQYPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q  L N+ +D+     D AIRL + +  SS++ ++L +   +  AAP Y+     P S
Sbjct: 122 EVQCELTNQRLDLIDGGFDLAIRLGQ-LGDSSMMAKRLSSRRQYVCAAPSYIATYGAPYS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + EL +HN +              W       +   ++   L  +S  S++   + G GI
Sbjct: 181 LSELSQHNCLI--------GSQSQWQFIEQGKVKNIKVQGSLHCSSGFSLLDAAIRGLGI 232

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             LPDY V        L+ ++E        ++  YP     + K++   +
Sbjct: 233 VQLPDYYVSQALTEGKLMVLLEPFQQSKEGIWALYPHNRHLSPKVRLLVD 282


>gi|288935133|ref|YP_003439192.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889842|gb|ADC58160.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 307

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT 
Sbjct: 1   MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  +++  + EL  S  +P+GKLRI+  + +G  LL   L  F  LYP 
Sbjct: 61  EGAAFLTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFTSLYPQ 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ +++  +  D AIR  + +  S LI RKL        A+P YL     P 
Sbjct: 120 VELDLDFSDRLVNLIDEGFDVAIRSGE-LADSRLIARKLGGFRFVLCASPAYLAEYGVPG 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
           S  EL  H  I F    P       W     R  G+ R  + + VN+  + ++    G G
Sbjct: 179 SPAELAAHKCIFF--RFPSTGLIQPWELRDMRLTGDFRATAVMTVNNIEAAIRLSAAGMG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA +PD++V+   D   L  ++             +P +   + +++ F +F+   
Sbjct: 237 IAYVPDFVVREAMDEGQLQEVLPGCCVKDGHFSVLWPASRYLSPRIRCFIDFMAAA 292


>gi|114330722|ref|YP_746944.1| transcriptional regulator, LysR family protein [Nitrosomonas
           eutropha C91]
 gi|114307736|gb|ABI58979.1| transcriptional regulator, LysR family [Nitrosomonas eutropha C91]
          Length = 310

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 141/292 (48%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +  F  +  +GS + AA+++ +++S ISR++  LE  +G++LF+R  R + LT+
Sbjct: 1   MDRFENMNTFAYIVEAGSISAAADRMDVAKSVISRRLKELEAHLGVQLFHRTTRQMKLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +  +   +   +  + +      G L++A  +  G   L   +  FL  +P 
Sbjct: 61  SGRAFYEQSVRILADILEAEHAVSQFHGALKGNLKVAVPLSFGLMHLGPAITAFLHTHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+  L  +++ +D+  +  D AIR+   +  SSLI R L  I     A+P YL++   P 
Sbjct: 121 IKFDLDFNDRQVDLLAEGFDLAIRIAS-LPDSSLIARHLAPIQAVMCASPAYLEHMGMPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +EL +H  + +  +     ++++      + I       L+ ++   +    V G GI
Sbjct: 180 TPEELIRHRCLAYNLI--SNSDNWHVYDPAGQLIKTRITPYLKASNGEFLRDAAVDGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LLP +IV    ++  L+ I+ +        Y  YP+    + +++AF +F+
Sbjct: 238 VLLPAFIVYREIEHGALLPILTEYHYSQLAAYAIYPQTRHLSQRVRAFVDFL 289


>gi|304320745|ref|YP_003854388.1| putative LysR family transcriptional regulator [Parvularcula
           bermudensis HTCC2503]
 gi|303299647|gb|ADM09246.1| putative transcriptional regulator, LysR family protein
           [Parvularcula bermudensis HTCC2503]
          Length = 295

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 138/285 (48%), Gaps = 6/285 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA +GSF  A  +L +++S++S++I  LE ++G+KLF R  R +TLTE G +     
Sbjct: 2   FVAVAEAGSFAGAGRKLGVTKSAVSKRIGQLEAQLGVKLFTRSTRAMTLTEAGERYRAHA 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           +      +  +         P+G+L+I   +  G+  +   +  FLL +PDI+  L LD+
Sbjct: 62  ALALEAGKQAEDAATALQDSPAGRLQILAPMSFGRLHIAPLMAGFLLEFPDIEADLALDD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+     D A+R  + + S +LI RKL  +H    A+P YL +   P +  +LDKHN
Sbjct: 122 RHLDLVEQGFDVAVRAGQ-LHSPTLITRKLTDLHSVLCASPEYLASHAPPRAPADLDKHN 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + F          +++    +  +        Q ++  ++M   + G GIA LP +I  
Sbjct: 181 CLHFAHASDA--HHWSFRKPGEPTVRVETRGSYQTSNSEALMDAVLGGLGIARLPTFIAG 238

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                  L  ++ D   PS  +   YPE      K++AF +FI  
Sbjct: 239 PAIAQGQLHHLLSDFEMPSQPLSVIYPERRYLPVKVRAFTDFIVE 283


>gi|288937015|ref|YP_003441074.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288891724|gb|ADC60042.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 301

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++ +F  V  SGSF+ AAEQL  + S++SR +  LE+++G+ L  R  R L+LT
Sbjct: 1   MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + +L E+   P G LR+     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRMQVVLQEMAAAENDLLETRTTPRGLLRVDAATPVMLHFLMPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIVASPDYVARYGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H+ + F + +        W  +          S +  NS  ++ Q C+ G+G
Sbjct: 180 QHPSDLKQHHCLGFTEPVSLN----TWPVSCCDGQLLEIESAVSSNSGETLKQLCLTGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L DY+V         V ++ D   P        Y      + +++AF +F+    + 
Sbjct: 236 IACLSDYMVDKEIGRGEFVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVKQ 295


>gi|312959416|ref|ZP_07773933.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311286133|gb|EFQ64697.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 298

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 138/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  VA    FT AAE+L +S S ISRQ++ LE  +  +L YR  R +TLTE G 
Sbjct: 6   WEGIDEFVAVAECSQFTAAAERLGVSSSHISRQVARLEERLQTRLLYRSTRKVTLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLQHCQRLQDGREEALRAVGDLASEPKGMLRMTCAVAYGERFIVPLVTRFMGLYPQLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  SS++  +L    M+  A+P YL+    P S+ 
Sbjct: 126 DIELSNRQLDLVHEGLDLAIRLGR-LSDSSMVASRLAPRRMYVCASPSYLERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +           D   LA   R   +      + NS  +++   + G G+  L
Sbjct: 185 ELSRHNCLI-------GSSDIWQLAQDGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V  +     LV ++E    P+  V+  YP+    + K++    F+  
Sbjct: 238 PDYYVLQHLHSGALVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVGFLKE 288


>gi|265999210|ref|ZP_05465375.2| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
 gi|263092670|gb|EEZ16886.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
          Length = 325

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 126/294 (42%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LT
Sbjct: 20  MMSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALT 79

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 80  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 139

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     A P YLK    P
Sbjct: 140 DLTVNMQLSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVATPRYLKERGTP 198

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI       LQ NS   + +  + G G
Sbjct: 199 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPTGPLQTNSSEIVREAVLAGLG 252

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 253 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306


>gi|306845495|ref|ZP_07478065.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306274106|gb|EFM55931.1| LysR family transcriptional regulator [Brucella sp. BO1]
          Length = 325

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LT
Sbjct: 20  MMSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALT 79

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 80  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 139

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P
Sbjct: 140 DLTVNMQLSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTP 198

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI       LQ NS   + +  + G G
Sbjct: 199 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPTGPLQTNSSEIVREAVLAGLG 252

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 253 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306


>gi|89092406|ref|ZP_01165360.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
 gi|89083494|gb|EAR62712.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
          Length = 298

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 149/293 (50%), Gaps = 10/293 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS + D   +F  VA   S+T A  QL++ ++++SR++  LE  +G+KL  R  R L+LT
Sbjct: 1   MS-NLDDTVIFNKVAELSSYTQAGLQLNIPKATVSRRVKQLEERLGVKLINRDTRKLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L+  TS +  ++   +         P+G+LRI   +++G  LL   + +F   +P
Sbjct: 60  EAGQYLYNSTSPLLSQVLEIESSAASFQKHPAGELRITMPVEIGIRLLNEIICDFAKQHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+ + + N  +DI  +  D AIR   P + S+LI +K+++       +P YL     P
Sbjct: 120 QIQLDIHMTNDVVDIIKEGFDIAIRGGSP-KDSNLIAKKIMSSRFFLCCSPEYLNEHGRP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H LITF     + ++    L   ++ +     + L  NS+  +++    G G
Sbjct: 179 SHPDQLKQHQLITFPYSSYQQLK----LMKGEQEVMVQANNRLSANSFDMLLKAAKKGLG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA++P  +  D   +  LV + +D  T    ++  YP+ +K T KL+ F +F+
Sbjct: 235 IAIMPTSVCSDALKSGQLVSLFDDWKTDDIGLFALYPDRIK-TKKLELFIHFV 286


>gi|325915944|ref|ZP_08178240.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325537911|gb|EGD09611.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 298

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D +RVF  VA    F+ AA+ L  S ++++RQ++ LE  +G +L  R  R ++LT  G
Sbjct: 3   TLDAMRVFTAVAERSGFSAAADALDRSTANVTRQVAALEQRLGTRLLNRTTRRVSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++   ++   L+  +  +   +++PSG LR+   +  G   L   L  F   YP ++
Sbjct: 63  TAYYQRCLQLLADLDDLEATIGAQALEPSGVLRVNAPVSYGIERLGALLPGFRARYPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+  +  D AIR+ +   +  LI R+L  + +   AAP YL     P   
Sbjct: 123 LDLSLSDRLVDMVEEGFDVAIRITRQ-PAPMLIARQLGKVRLLTCAAPAYLARAGTPRHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +          F+     D  +       L+ N+   +    + G G+ +
Sbjct: 182 SDLAGHECLLYHYSPSGDELRFH---GPDGDVTVRIHGGLRANNGHVLNAAALAGQGVVM 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            PD++   +     LVR++ +       ++  Y        K+++F +++  
Sbjct: 239 QPDFLADAHIASGRLVRLLPEYELGEIGIFAVYASRSHLAPKVRSFIDYLLE 290


>gi|222087545|ref|YP_002546082.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724993|gb|ACM28149.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 298

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 138/289 (47%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F      GSF+  A+ L++S   + + +  LE  +G++L  R  R   LTE GS  +
Sbjct: 7   MSIFVKAVELGSFSAVADALNMSPQLVGKHVQFLEHHLGVRLLNRTTRRQHLTEVGSLFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +  ++E+ +    E+   P G+LR++  +  G N L   L E+L  YP++ I L 
Sbjct: 67  ERSRNILAEVESAEALAAETRAVPRGRLRVSAPVTFGINALAPKLPEYLKAYPEVSIDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D   R+ + +  S LI R+L    +   AAP YL++   P +  +L 
Sbjct: 127 LSNRLVDLIDEGYDAIFRVGE-LSDSGLIARRLDPYRLIICAAPRYLESRGTPRTPGDLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F     +    F      D  +  P    L V+S  +++Q  V G GI   P  
Sbjct: 186 DHECLIFSHTRLRTHWAFE---GPDGYVDVPISGRLTVDSGEALLQAAVAGLGIIFQPLE 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +++   ++  LV I+ +   P+  ++  Y    + T KL++F +++  +
Sbjct: 243 LIRASIESGQLVPILPEYRIPTRPLHVLYAPDRRITPKLRSFLDYVVAE 291


>gi|313498251|gb|ADR59617.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 294

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 138/293 (47%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  +GSFT AA++L +S+ S+SR++  LE  +G++L  R  R L  T  G 
Sbjct: 4   YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEERLGVRLLNRSTRRLDATPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++  + ++   +    G LR++  +      L   L EFL L+P + +
Sbjct: 64  HYYQSALRLLGEVQQVEHDISGQAQVLRGTLRLSAPLSFAMAHLGCLLTEFLQLHPQVDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++ ++     A+P YL+    P    
Sbjct: 124 EVDLSDRAVDLIGEGYDLALRIGA-LEDSSLIARRIASVERVYCASPAYLQARGVPGKPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ + +G       +         +         ++ N+   +    + G G+  L
Sbjct: 183 ELAAHDCLPYGHSRQVQWQ----FHKGGKTQAIQVTGRMRANNGELLRGAAIAGMGVTYL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV        LV ++++    +  +   YP+  +    ++ F +F+  + 
Sbjct: 239 PTFIVGQALAEGQLVTVLDEWRPSALQLSAVYPQHRQVARPVQGFVSFLRARL 291


>gi|206564589|ref|YP_002235352.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198040629|emb|CAR56615.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 334

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 28  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 87

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LRI +T   G+ ++   L++F   YPDI + L+L
Sbjct: 88  CRPGIEHLAQALEDMRELRSGPPSGHLRIGSTPGFGRKVVAPLLRDFHARYPDITLDLLL 147

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++  D S D  D A R  + ++ S+++ R+L+ + M   A+P Y      P  + +L +
Sbjct: 148 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAHRHGLPRHVDDLAR 206

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I       +  E   W   +D    + +++     N    +++  + G GIA LP Y
Sbjct: 207 HRCINLCTASGRVTE---WEFRIDGLTQQRQLAAHHTFNDIDLVVRAALDGLGIAQLPAY 263

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V D   +  LV  +          Y CY        +++ F +++  + R
Sbjct: 264 QVCDLLADGRLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTR 314


>gi|58038618|ref|YP_190582.1| LysR family transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58001032|gb|AAW59926.1| Transcriptional regulator, LysR family [Gluconobacter oxydans 621H]
          Length = 316

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 122/294 (41%), Positives = 172/294 (58%), Gaps = 4/294 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+ VA +GSFTHA ++L LSQS++SRQIS LE  + + LF+RHARGL LTE
Sbjct: 17  QMDWDKLRIFHAVAEAGSFTHAGDRLGLSQSAVSRQISALEDVLRVPLFHRHARGLILTE 76

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   EV+ KL  TQ  L ES  + +GK++I TT   G + L   L  FL L+PD
Sbjct: 77  QGDVLNRTVREVFSKLALTQAFLSESKERAAGKIKITTTTGFGLSWLSPRLNRFLELHPD 136

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L+L++ D+D+ M  AD AIRL  P Q   L+QR L    M  YA+  YL+    P 
Sbjct: 137 IEVTLLLEDADLDLGMREADVAIRLHPPTQ-PDLVQRHLANFPMPIYASAEYLERNGTPH 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVLGS 239
           S+++L  H +I+F       + + NWL  + R  G  R     L +N+  ++      G+
Sbjct: 196 SLEDLANHQIISFAG-WHLPLPNVNWLLDLLRQEGVARQGSRRLAINNISAVANAIAAGT 254

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  LP Y     P LVRI+ +   P    YF YPE L+ + ++  FR+F+  +
Sbjct: 255 GIGSLPLYAATGYPELVRILPNQQVPLVEAYFVYPEELRTSKRIAVFRDFLLSE 308


>gi|114769755|ref|ZP_01447365.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114549460|gb|EAU52342.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|161170251|gb|ABX59221.1| transcriptional regulator [uncultured marine bacterium EB000_55B11]
 gi|297183780|gb|ADI19903.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 303

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V  SG FT AA +L LS+SS+S+ I+ LE+ +G+ L  R  R ++ TE G   
Sbjct: 6   EMEIFVAVVDSGGFTEAANKLRLSKSSVSKHIASLESRLGVTLLNRTTRNVSATEIGINY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   +   +++   + ++    +  G LR++ + D G N L   +  F+  YP I+I +
Sbjct: 66  YQKCIKFLEEIQDADLSVKAMQTEAQGILRVSVSNDFGSNHLINCITPFIKAYPKIKIHM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LDN+ +D+  +  D A+R+   +  SS+  +K+    +    +  YL +   P  I +L
Sbjct: 126 TLDNRFVDLVSEGFDLAVRIGN-LSDSSMKAKKIANTKLAIVGSRDYLASNGIPKKIDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H L+ +                 +R I       L VN   S++     G G+A LP 
Sbjct: 185 SDHQLLNYSFEKSNNFWRIPGPDGEERQIRGK--DNLSVNDGKSLLMAAEAGLGLAYLPC 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +I  +   + +L +I+ ++  P   VY  YP +     KL+ F +++
Sbjct: 243 FIYGEKIKDGSLQKILTNIKFPELGVYAVYPSSDYIPPKLRVFIDYL 289


>gi|254227510|ref|ZP_04920942.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262396224|ref|YP_003288077.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151940122|gb|EDN58948.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262339818|gb|ACY53612.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 289

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 144/294 (48%), Gaps = 11/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT AA +L  S + ISR++S LE  + +KL +R  R ++L+E G
Sbjct: 3   NWEGVSEFVAVAETNSFTGAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +   +P G LR+   +  G+  L   L +FL  YP + 
Sbjct: 63  QLYYQQCKHLVEGLELAELAVTQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L N+ +D+     D AIRL + +Q SS+I ++L +   +  A+P YL+   EP ++
Sbjct: 123 LDLVLTNQKLDLIEQGVDVAIRLGR-LQDSSMIAKRLSSRQNYVCASPMYLERFGEPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +           D+       R         ++ NS  +++     G G+  
Sbjct: 182 SELGWHQCLV-------GSVDYWHFKENKRDKSLRVSGRIKCNSGFALVDAAKRGLGLVQ 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPDY V+   D+  LV ++ D       ++  YP++   + K++   +F+  + 
Sbjct: 235 LPDYYVQEALDSGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFLAQEL 288


>gi|118591577|ref|ZP_01548974.1| probable transcriptional regulator protein, LysR family protein
           [Stappia aggregata IAM 12614]
 gi|118435905|gb|EAV42549.1| probable transcriptional regulator protein, LysR family protein
           [Stappia aggregata IAM 12614]
          Length = 304

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 137/299 (45%), Gaps = 7/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G+FT AA+ L + +++++  I  LE  +  KL  R  R + +T 
Sbjct: 1   MDQLSAMRAFVRVVETGNFTRAADSLQMPKATVTNLIQNLEKHLQTKLLNRTTRRVIVTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   +++  +++     L ++   P G+LR+  +       +   L  F   YPD
Sbjct: 61  DGALYYERAAQIVSEVDELDASLAQAQNNPGGRLRVEMSGAFADWFVIPALGGFYEKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI + + ++ +D   +  DCA+R   P    SLI R++  + +   AA  YLK    P 
Sbjct: 121 IQIDIGIGDRTVDYLAENVDCALRGGAP-ADQSLIARRVAEVGLMTCAAASYLKRAGIPE 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           S  ++   H+ +++            +    +  + + R  C  VN   S +   + G G
Sbjct: 180 SPADVQANHHCVSYFVAAKGRTNPMTFRKDGEEILVDGRYHC-SVNDARSYVAAVLAGHG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA +PD++V++     +LV ++ +    +  +Y  YP     + K++ F +++     D
Sbjct: 239 IAQVPDFMVREELERGDLVPVLAEWSADTIPLYIVYPPNRHLSNKVRVFVDWLVRLLAD 297


>gi|71909442|ref|YP_287029.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB]
 gi|71849063|gb|AAZ48559.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 335

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 144/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++VF  V  + SFT AA+ L L +++++  I  LE  + ++L  R  R ++LT 
Sbjct: 1   MDRFQAMQVFTRVVDANSFTRAADMLGLPRATVTTIIQNLEALLQVRLLNRTTRRISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   + +  ++E T+   ++ +  P G+LRI     +G+ +L   L EF   YP+
Sbjct: 61  DGAAYYEHCARILGEVEETESSFRDVAAGPKGRLRIDVPSPIGRLVLIPRLCEFRARYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + + ++ +D+  +  DC IR    +Q S+L+ R++  I +   A P YL+    P 
Sbjct: 121 VELVIGMGDRMVDLVREAVDCVIRAGD-LQDSTLVARRIGAIKLITCATPDYLERYGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           SI +L +H  + +     +   +F+W   V D+ +       + VN   + +   + G G
Sbjct: 180 SIDDLQQHVAVHY--FSHRTGRNFDWDFIVDDQSVPYKMQGTVSVNDMDAYIACALQGMG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     + V    ++  LV ++ ++      +   Y +    + K++AF +++  
Sbjct: 238 MIQPARFSVLPYLESGALVEVLPELAPSPMPISVAYMQNRHLSPKVRAFVDWVAE 292


>gi|269961848|ref|ZP_06176205.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833426|gb|EEZ87528.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 304

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L++F  +A + + + A ++L LS +  S  I+ LE  +G++L +R  R ++LTE+
Sbjct: 1   MNIEHLKLFVRLASTHNISMAGQELGLSPAVASAHINKLEEGLGVRLVHRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        EV   +E  +  +      P+G LR+      G+  L   LK F+  YP++
Sbjct: 61  GQAFLPHAEEVLATVEAARGAVGVGHSAPTGTLRVTAPASFGRLHLVPALKGFMAAYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +     +  ID+     D AIRL + ++ S+L+ RKL        A+P YL+    P +
Sbjct: 121 TVDFRFSDSIIDMVEGGFDVAIRLAE-LKDSTLVARKLAPDRRIIVASPEYLEKHGTPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QEL +H  +T   L     E      T D           + ++  ++   C+ G G++
Sbjct: 180 PQELAEHECVTLMGLDNWVFE------TPDGHYAMRASGSFRTDNGDAMRDACIDGLGVS 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNF 289
           +   + V        LV I+ED     + +++  YP +     K++AF ++
Sbjct: 234 INSIWSVYKQLQAGELVEILEDYPLVMNASIWAVYPSSRLIAPKVRAFIDY 284


>gi|77464506|ref|YP_354010.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77388924|gb|ABA80109.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
          Length = 313

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 141/296 (47%), Gaps = 7/296 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D   ++  F +V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ T
Sbjct: 12  AMDRLTEMEAFAMVVDQGGFTDAARKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPT 71

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     V          +      PSG LR++   D G  LL   L EFLL YP
Sbjct: 72  EIGLAYYDRARRVLTDAGEADALVTSMQTAPSGHLRLSVATDFGVALLAPILAEFLLDYP 131

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + ++L+N+ +++  +  D AIR+   ++ SSL  RKL        A+P YL+    P
Sbjct: 132 DITVTMVLNNRSVELISEGFDMAIRVGD-LEDSSLRARKLTETTRRMIASPGYLQRHGRP 190

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + I +L  H L+         +  +  L+    P        L VN   S+++  V G G
Sbjct: 191 MKIDDLTDHRLLYHSTQAHGNV--WRLLSPSGEPRQVRAPGFLTVNDGHSLLKAAVSGLG 248

Query: 241 IALLPDYIVKDNPN--LV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA LP+++  +     LV  ++ D+   +  ++  YP       K++AF +F+  +
Sbjct: 249 IAHLPEFLFAEAMRAGLVEEVLPDLPVETLGIHAIYPAGRFTQPKVRAFIDFLVRR 304


>gi|161523076|ref|YP_001586005.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348098|ref|YP_001941294.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160346629|gb|ABX19713.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189338236|dbj|BAG47304.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 294

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDVIGEGFDLVLRIGA-LEDSTLIARALGAWKMIACASPAYLKRHGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H  + +G       E          P        L  N+   +    + G GIA
Sbjct: 180 PAELANHTCLLYGRERRVGWE----FRVDGAPRTFDVQGPLVANNGEVVRDAAIAGLGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP +IV    D   LV +++       T+   +P+  +    L+ F  F+  + 
Sbjct: 236 LLPSFIVGAALDGGALVPVLDAYAPAPITLNAVFPQHREGFVTLRTFIGFLAERL 290


>gi|239502918|ref|ZP_04662228.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB900]
          Length = 337

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 143/290 (49%), Gaps = 8/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 1   MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YPDI + + 
Sbjct: 61  DRTARILADVADIESSFHDTERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP SI++L 
Sbjct: 121 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 179

Query: 188 -KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  I F     +   +F+W   VD  I    +   + VN   + +   + G GI   P
Sbjct: 180 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            Y++    ++  L  ++         +   Y +    + K+K F +++  
Sbjct: 238 RYMLTNHLESGLLKEVLPQWTPAPMPISAVYLQNRHLSLKVKVFVDWVAE 287


>gi|260769894|ref|ZP_05878827.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|260615232|gb|EEX40418.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
          Length = 299

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 132/292 (45%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AEQ +L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSKVAEQNNLTNSVVSKRMARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG +R++     G  +L   + EF  L+P + ++
Sbjct: 64  LLASAKNVKQATQEAMDAVAGFGENVSGHIRMSVPSISGDLILADAVAEFCNLHPGLTVE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLDNRFVDLVEGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIARNGKPIKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +           +W     +     R+S     ++  ++ +  + G GIA +
Sbjct: 183 LVNHNCLQYAYQTTGAT---DWEFKSAKGNYIVRVSGTFTTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V  +     LV I  + +     +Y  YP   +   K++     I  +
Sbjct: 240 PRCLVYHDFRNGELVDIFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRAR 291


>gi|260462526|ref|ZP_05810733.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031722|gb|EEW32991.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 313

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 9/297 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D  + L  F   A  GSF  A   L +S S++ + ++ LE E+G++L  R  R + LT
Sbjct: 18  AMDRLNGLLAFARTAELGSFIAAGRALGISASAVGKSVARLEQELGVRLLQRSTRRVGLT 77

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   ++  +  L  +   P G+LRI+T I +  +LL   L EF+  YP
Sbjct: 78  EEGRLFDERVRRILDDIDDAEAMLSRTRETPRGRLRISTPI-VTYHLLLPVLSEFMARYP 136

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ +  +++ +D+  +  D AIR  + +  S L+ R +    M   AAP YL     P
Sbjct: 137 EIELDIDFNDRVVDVIEEGIDVAIRSGE-LPDSRLVSRPVAPFRMLLCAAPSYLDRHGTP 195

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I F  L    + D+ +      P      S L  N+  ++    + G G
Sbjct: 196 SVPADLIRHFGINFRFLNSGRLLDWPFTTGSAEPQIR---SMLTCNNMEALKGATLAGLG 252

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA +PD++V++   +  L  +++D +         +P     + K++ F +F+  + 
Sbjct: 253 IACMPDFLVREALHDSKLRIVLDDHVDGRGQFRMLWPSNRHLSPKVRVFVDFLPERL 309


>gi|254227673|ref|ZP_04921104.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151939715|gb|EDN58542.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 337

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 142/292 (48%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAEQL +S+S +SRQI+ LE ++G  L  R  R L LTE
Sbjct: 39  HINLADIRSFVLIAQLGNFTKAAEQLGVSRSHVSRQITNLEQQIGATLLQRTTRTLKLTE 98

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G  L++      H ++   + + +   +  G++RI      LG++++   + +FL+ +P
Sbjct: 99  AGKVLYKQCETALHNIDQAVMAVVDDVEELRGEIRINCVGGYLGEDVVADIVAQFLIQHP 158

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L   +  +D+  D  D A R+ K +  S+ I RKL+ + M  YA+P YL+    P
Sbjct: 159 QVNINLDFSSHRVDLIADEFDIAFRMGK-LDDSNFIARKLIDVEMGTYASPSYLETHGYP 217

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L+KH  +T G +     E+ N   + +  I       L+  S   +++  + G+G
Sbjct: 218 SHPKDLEKHICLT-GSVTRWAFENTNTKQSTEHQI----RGQLRCKSGRVMIKAALAGNG 272

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P    +       L  +  D   PS      Y        +++AF +F
Sbjct: 273 IIRVPALYCQQELQTGKLKEVFTDWSIPSVEFSLLYHHDRHQPKRIRAFIDF 324


>gi|206580873|ref|YP_002238143.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569931|gb|ACI11707.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 305

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 138/296 (46%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT 
Sbjct: 1   MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  +++  + EL  S  +P+GKLRI+  + +G  LL   L  F  LYP 
Sbjct: 61  EGAAFLTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFTRLYPQ 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ +++  +  D AIR  + +  S LI RKL        A+P YL     P 
Sbjct: 120 VELDLDFSDRLVNLIDEGVDVAIRSGE-LADSRLIARKLGGFRFVLCASPAYLAEYGPPD 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
           S +EL  H  I F    P       W     R  G+ R  S + VN+  + ++    G G
Sbjct: 179 SPKELAAHKCIFF--RFPSTGLIQPWELRDMRLTGDFRAASVVTVNNIEAAIRLSAAGMG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA +PD++V+   D   L  ++             +P +   + +++ F +F+   
Sbjct: 237 IAYVPDFVVREAMDEGQLQEVLPGCCIKDGHFSVLWPASRYLSPRIRCFIDFMAAA 292


>gi|330979507|gb|EGH78110.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 301

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 129/295 (43%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    EV   +  ++   +++   P+G LRI   +  G  +L   L EF   +P
Sbjct: 60  EFGTAYYERCLEVLGLVAESEQLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+L N+ +D+  +  D AIRL    +SS LI R L    +   AAP YL     P
Sbjct: 120 EVKLDLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--NWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVL 237
              ++L +HN + F              W  T  D  +       +  N+   + Q    
Sbjct: 180 THPEDLRQHNCLAFAYPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     LV +  D   P       Y +      KL++F  +
Sbjct: 240 GMGVVMLPDALVQRDLQEGRLVALFPDYHLPRRPTNLLYVQDRYRLPKLRSFVEY 294


>gi|152970576|ref|YP_001335685.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330015461|ref|ZP_08308163.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150955425|gb|ABR77455.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328531682|gb|EGF58513.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 311

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT 
Sbjct: 1   MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  +++  + EL  S  +P+GKLRI+  + +G  LL   L  F  LYP 
Sbjct: 61  EGAAFLTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFSRLYPQ 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ +++  +  D AIR  + +  S LI RKL        A+P YL     P 
Sbjct: 120 VELDLDFSDRLVNLIDEGVDVAIRSGE-LADSRLIARKLGGFRFVLCASPAYLAEYGAPD 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
           S  EL  H  I F    P       W     R  G+ R  + + VN+  + ++    G G
Sbjct: 179 SPAELAAHKCIFF--RFPATGLIQPWELRGMRLTGDFRSAAVMTVNNIEAAIRLSAAGMG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA +PD++V+   D   L  ++             +P +   + +++ F +F+   
Sbjct: 237 IAYVPDFVVREAMDEGQLQEVLPGCCIKDGHFSVLWPASRYLSPRIRCFIDFMAAA 292


>gi|161523887|ref|YP_001578899.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351352|ref|YP_001946980.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221211395|ref|ZP_03584374.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160341316|gb|ABX14402.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335374|dbj|BAG44444.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221168756|gb|EEE01224.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 294

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGISASAVGKRIARLEARLNVRLFHRSTRSVTLTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  +++  + EL +S   P G+LR++        L+   L  F+  YP+I++ L   
Sbjct: 69  CRRVIAEIDAAERELTQSVEAPRGRLRVSLPT--IGTLMLPVLAGFMTAYPEIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R L     H  A+P YL+    P +  +L +H
Sbjct: 127 DRLVDVVDEGFDAVVRTGRP-ADSRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLVRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +    P   +   W     R    P +   +  N+  + + + + G GIA LP++ 
Sbjct: 186 RCLHY--RFPATGKLEIWPLRASRSHTPPDVPVSMVSNNAETRLCFALRGLGIACLPEFF 243

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V+   D   L  +++D +     VY  +P     T KL+AF +++    +
Sbjct: 244 VREPIDAGTLRTVLDDYVASRTPVYVLWPSGHHPTPKLRAFVDYLVEHLQ 293


>gi|59711673|ref|YP_204449.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59479774|gb|AAW85561.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 300

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 138/291 (47%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R+F  V  +GS T AAE+L+L++S+IS+++S LE ++G+KL  R  R  +LTE G 
Sbjct: 4   LESMRIFITVVETGSITKAAERLNLAKSAISKRLSELEHQLGVKLLNRTTRTSSLTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +++     +  +S K +G L++A  +  G   L   L  F  L+P++++
Sbjct: 64  VYLNKCKLILDEVDDLHCHISSTSSKLNGVLKLAVPLTFGLKHLVPALDNFAKLHPELKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +K ID+  D  D AIR+   + +S+L  + L  IH     +P YL       +  
Sbjct: 124 DIDFSDKKIDLVEDGVDLAIRIGS-LSNSTLRAKPLAPIHHVLCVSPDYLTEHGHITTPN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+ +       +E  +     ++ +  P  S    N+   +    V G G+   
Sbjct: 183 DLKSHKLLRYSQQPLSGVELID---NNNKTMTVPMESFCIANNGDFLKTMAVSGHGVLFT 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P +IV +   N +L+ IM D    S   Y  YPE      K++   +F+  
Sbjct: 240 PKFIVWEELANGSLIPIMTDYRFNSIKAYAVYPETRYLPRKVRMLIDFLSE 290


>gi|254451563|ref|ZP_05065000.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198265969|gb|EDY90239.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 309

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 107/289 (37%), Positives = 168/289 (58%), Gaps = 4/289 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+ VA +GS T A ++LHLSQS++SRQI  LE  +   LF+RHARGL LTE
Sbjct: 6   PIDWDKLRIFHAVADAGSLTAAGDKLHLSQSAVSRQIRALEEALSTILFHRHARGLILTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L   T  +  +L+     +++S+ +  G+L++ TT   G   L   L      YPD
Sbjct: 66  QGELLFDATKSMSRRLDAASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPD 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L+L+ + +D+ M  AD AIR+++P Q+  L+++KL+T+ M  YA+  YL       
Sbjct: 126 LNIDLMLEERVLDLPMREADVAIRMKEPSQAD-LVRKKLMTVRMRLYASQAYLDKVGGFD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I+++ +H LI      P   +       V   +   + S L VN+Y  ++Q  +   GI
Sbjct: 185 EIEDIGRHRLIC---QSPSAFQVAAGATLVGHLLSYDKPSLLHVNNYFGVLQAVLSDLGI 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPDY+ +D P LVR++ +V + +  VY  YPE L+ + ++ AFR+F+
Sbjct: 242 GVLPDYLTEDFPTLVRVLPEVESGAVPVYLAYPEELRQSKRIMAFRDFV 290


>gi|107103144|ref|ZP_01367062.1| hypothetical protein PaerPA_01004213 [Pseudomonas aeruginosa PACS2]
 gi|218890145|ref|YP_002439009.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254236544|ref|ZP_04929867.1| hypothetical protein PACG_02543 [Pseudomonas aeruginosa C3719]
 gi|126168475|gb|EAZ53986.1| hypothetical protein PACG_02543 [Pseudomonas aeruginosa C3719]
 gi|218770368|emb|CAW26133.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 302

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA +G FT AAE++ +S S ISRQ++ LE  +  +L YR  R ++L+E G 
Sbjct: 4   WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     + + S +P G LR+   +  G+  +   +  F+  YP +++
Sbjct: 64  TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  S L+  +L    M+  A P YL+    P S  
Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCATPEYLRRHGTPQSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL + N +     +   +ED        R          + NS  +++   + G G+  L
Sbjct: 183 ELGQFNCLIGSSDLWSFLED-------GRETQHRVQGNWRCNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V ++     LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 236 PDYYVIEHLRSGRLVSLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYLKE 286


>gi|213158702|ref|YP_002320000.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215482844|ref|YP_002325047.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|213057862|gb|ACJ42764.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213989057|gb|ACJ59356.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
          Length = 343

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 145/297 (48%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT
Sbjct: 1   MDL-FHAMRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  +  T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YP
Sbjct: 60  PDGAVYYDRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + + L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP
Sbjct: 120 DIDLVIGLNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEP 178

Query: 181 LSIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
            SI++L   H  I F     +   +F+W   VD  I    +   + VN   + +   + G
Sbjct: 179 TSIEDLQKNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI   P Y++    ++  L  ++         +   Y +    + K+K F +++  
Sbjct: 237 FGIIQGPRYMLTNHLESGLLKEVLPRWTPAPMPISAVYLQNRHLSLKVKVFVDWVAE 293


>gi|260467216|ref|ZP_05813392.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259028991|gb|EEW30291.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 307

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 143/291 (49%), Gaps = 6/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LRVF  VA + SF+ A   L L +S++SR I+ LE ++G +LF R  R + LT  
Sbjct: 2   IDLNDLRVFERVAATSSFSAAGRALGLPKSTVSRNIARLEQQLGARLFQRTTRAVILTSA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    +++  +++ T   ++  S +P G LR++  I  G N+L  +L EFL  +P +
Sbjct: 62  GEALQARCADLMARIDETVAYVEGLSGEPRGLLRVSAGIGFGINVLSRHLPEFLARFPHV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L ++D+D+  +  D AIR+  P+  S+L+  +L ++     AAP YL    +PL+
Sbjct: 122 DVSLDLTSRDLDLVAERVDVAIRMG-PLPDSALVATRLGSVRRCLAAAPDYLSRHGKPLT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L KH  I       +                    + + VN  L+I Q    G+G+ 
Sbjct: 181 PADLSKHECIEMPRGDGRMRTWH--FYRGGEMAAVDVHNRVSVNDALTIHQLVRNGAGLG 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +L  Y+  D+     LV ++ D       V   +P   + +  +++F +F+
Sbjct: 239 VLSTYLCVDDFAEGRLVPLLADWDIAPVEVNLLFPSKRELSQTVRSFVDFM 289


>gi|332875192|ref|ZP_08443025.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|193077849|gb|ABO12726.2| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           17978]
 gi|332736636|gb|EGJ67630.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 337

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 143/290 (49%), Gaps = 8/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 1   MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YPDI + + 
Sbjct: 61  DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP SI++L 
Sbjct: 121 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 179

Query: 188 -KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  I F     +   +F+W   VD  I    +   + VN   + +   + G GI   P
Sbjct: 180 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            Y++    ++  L  ++         +   Y +    + K+K F +++  
Sbjct: 238 RYMLTNHLESGLLKEVLPQWTPAPMPISAVYLQNRHLSLKVKVFVDWVAE 287


>gi|301156291|emb|CBW15762.1| predicted DNA-binding transcriptional regulator [Haemophilus
           parainfluenzae T3T1]
          Length = 299

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 142/293 (48%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + VF  V  + SFT AA Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISVFCKVIETQSFTQAANQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIVPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L      +   +    G L I+   D G   +  NL +F+ L+P+
Sbjct: 61  AGMLYYQRCQAILLDLSEADSSISNMATSLQGNLLISVPRDFGLLYISPNLPKFIELHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  ++K +D+  +  D A+R+   +Q SSL+ RK+ +  MH  A+P YL+    PL
Sbjct: 121 LHVEIEFEDKRVDLVAEGYDLALRIGY-MQDSSLVARKISSSLMHFVASPSYLEARGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ H  + +       +   +W +T    I   +I S +  N+ +++++    G G
Sbjct: 180 TPDDLEYHQGLLYKS----SLNQVHWQSTKANQIQRYKIQSKVVSNNGMALLEMTKAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I+  PD+ VKD   + +LV I+ +       +Y  YP       K++AF  F+
Sbjct: 236 ISNAPDFFVKDALASGDLVEILSEYKQKPLDIYVVYPNRRHLPAKVRAFIEFL 288


>gi|172065125|ref|YP_001815837.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997367|gb|ACB68284.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 294

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 139/296 (46%), Gaps = 10/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVSTVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLAAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRIGA-LEDSTLIARPLGAWKMIACASPAYLKRQGTPDT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L  H  + +G           W   VD       +   L  N+   +    + G GI
Sbjct: 180 PADLAAHTCLLYGRE-----RRVGWEFRVDGAARTFDVQGPLVANNGEVVRDAAIAGLGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP +IV    D+  LV +++       T+   +P+  +    L+ F  F+  + 
Sbjct: 235 ALLPHFIVGAALDSGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFLAERL 290


>gi|70729843|ref|YP_259582.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344142|gb|AAY91748.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 298

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 132/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R F V      F  AA  + + +S +S+QI  LE  +G++L  R  R L LTE
Sbjct: 1   MDRIECMRAFVVTVDENGFAAAARAMDVPRSKVSKQIQALEEAIGVQLLQRTTRSLRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++ +    EV   ++  +   ++   +  G LR+   +  G   L   +  F   +P 
Sbjct: 61  AGAEYYESVREVLATVDEAEQRARDGIAELRGVLRVNAPMSFGLRRLGPLVPLFHEQHPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++QL+L ++ +D      D  +R+   +  SS++ R+L        A+P YL     P 
Sbjct: 121 IELQLVLSDQQVDPLRGGFDVTLRIAS-LPDSSMVARQLAPAPRIMVASPTYLARAGIPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + +G L        +  + V R         L  N+   + Q    G GI
Sbjct: 180 QPKDLSSHQCLNYGYLQSGVSLQLSNGSDVQR---VHVTGPLHANNGDLLAQAAEAGMGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLPD+IV+D      LV ++ +   P  ++   YP A +   K +AF +F+
Sbjct: 237 ALLPDFIVEDALAAGRLVPVLCEWQAPPISINVVYPSARRVPQKTRAFIDFL 288


>gi|170701185|ref|ZP_02892156.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133891|gb|EDT02248.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 305

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AAE LH+S++++++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMRAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVRLLNRTTRRINVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   + +   ++  +  L  +S  P G+LR+       + +L   L  FL  YPD
Sbjct: 61  DGIAYYERVTRLLADMDDVETSLSSASAVPRGRLRVDVPSPFARLILIPALPAFLARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +DI  +  DC +R  +P    S++ R++  + +   A+P YL     P 
Sbjct: 121 IQLDMGVSDRTVDIIGENVDCVVRGGEP-NDQSMVARRVADLSLGIVASPGYLALAGTPS 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              EL    H ++ F       +         +    + R   L V+   + +   V G 
Sbjct: 180 HPAELENSHHRIVGFSWGRAGKLYPLVMHRNGETVAVQGR-YALAVDDGNAYLAAGVAGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP Y+ K   +   LV + +D       +Y  YP     + KL+AF +++  
Sbjct: 239 GIMWLPQYMAKAHLERGELVTLFDDWQLDPMPLYIAYPPNRHVSAKLRAFIDWVVE 294


>gi|17549331|ref|NP_522671.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431583|emb|CAD18261.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 315

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 144/299 (48%), Gaps = 8/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AA+ L L +++++  +  LE  +G++L +R  R + +T 
Sbjct: 1   MDRLQAMQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   LE T+    +S+    G LRI     +G+ LL   +++F   YP 
Sbjct: 61  DGAAYYERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+++ + ++ +D+  +  DCA+R+ + +Q S+L+ R++  + M   A+P YL+    P 
Sbjct: 121 LQLEIGMSDRTVDLVQEGVDCAVRVGE-LQDSTLVARRIGQLSMVNCASPDYLERYGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           S+++L  H  I      P+     +W   +D      ++  L  VN   S M   + G G
Sbjct: 180 SLEDLQDH--IAVNYFSPRNGRRMDWDFVIDGQKQIHKVRSLVSVNDAESAMACALHGLG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +      +  ++     LV ++ D I+    V   YP     + K++ F +++ +   D
Sbjct: 238 LLQTARLLAYEHLQSGQLVEVLPDYISEPLPVSVIYPHNRHLSPKVRVFVDWVAMLFAD 296


>gi|115374726|ref|ZP_01462003.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822698|ref|YP_003955056.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115368297|gb|EAU67255.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395770|gb|ADO73229.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
          Length = 307

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 132/296 (44%), Gaps = 7/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L +F  V   GSF  AAE L  S ++++R ++ LE+ +  +L  R +R L+LTE
Sbjct: 1   MDRLRALEIFVKVVARGSFARAAEALDTSPANVTRYMNELESHLSTRLLNRSSRKLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   +   +     +S++P G+LR+   +  G   L     +F+  +P 
Sbjct: 61  SGEALYERGKSILDDVAEAEALASSASLQPRGRLRLNAPVSFGILHLAPLWPQFMQRHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L ++ +D+  +  D AIR+ +   ++  + RKL T      AAP YL+    P 
Sbjct: 121 VELDVSLTDRVVDLVEEGYDLAIRISRAGPATH-VARKLATSQNIVCAAPAYLRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  + +        ++++ L    +         +  N+  ++    + G+GI
Sbjct: 180 VPTDLSRHTCVGYS--YSATADEWHLLDGTGQMHAVKVRCAMHANNGDTVRAAALAGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              P +++ D+     LV ++     P   V   YP     + K++   +F+    
Sbjct: 238 TWQPTFLIADDLRQGRLVPLLPGYRMPDIDVLALYPSRRYLSAKVRVMVDFLAEAL 293


>gi|300719065|ref|YP_003743868.1| LysR family transcriptional regulator [Erwinia billingiae Eb661]
 gi|299064901|emb|CAX62021.1| LysR family transcriptional regulator [Erwinia billingiae Eb661]
          Length = 305

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 139/292 (47%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R + LT 
Sbjct: 1   MDRIQAMQVFIRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLQVRLLNRTTRRVRLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +      E+   +E T+  L +S  +P G+LRI     +   ++  NLK+F  LYPD
Sbjct: 61  EGLQYLAQCREILSLIEHTESSLTDSVRRPQGRLRIDMPGGIAHFIVMPNLKDFYRLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + + ++ +D+  +  DC IR  + +  S+L+ R L        A+P YL+    P 
Sbjct: 121 IYLMIGVSDRQVDLVQEGVDCVIRTGE-LTDSTLVARPLGRFRWVTCASPDYLREYGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L +H  I +     +   +  +    +  +  P      VN     ++ C+ G G+
Sbjct: 180 TPEALSQHRAIHYFSGSGRRTNELRFRRGTEM-LSVPVEGDAAVNETGLYIRLCLEGFGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L + ++ +N     LV ++ D   PS  V   YP     +  ++AF +++
Sbjct: 239 AQLAENVISENLQQGKLVEVLADWQPPSVPVTMLYPHQRFLSPAVRAFADWV 290


>gi|37676920|ref|NP_937316.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|320159012|ref|YP_004191390.1| putative lactate-responsive regulator LysR family [Vibrio
           vulnificus MO6-24/O]
 gi|37201464|dbj|BAC97286.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319934324|gb|ADV89187.1| predicted Lactate-responsive regulator LysR family [Vibrio
           vulnificus MO6-24/O]
          Length = 299

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 129/292 (44%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE+  L+ S +S++I+ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVEQGSFSKVAEENSLTNSVVSKRIARLEEEIGAQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF   +P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPTISGDLILADAVAEFCNQHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL   +
Sbjct: 124 MSLDNRFVDLVSGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKHGKPLIPSD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +HN + +        E   W    ++     R+  C   ++  ++ +  + G GIA +
Sbjct: 183 LTQHNCLQYAYQTTGASE---WEFKGEKGNYIVRVAGCFSTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V  +     LV I  + +     +Y  YP   +   K++     I  +
Sbjct: 240 PRCLVYHDFRNGQLVDIFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRER 291


>gi|206579244|ref|YP_002236117.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|290511907|ref|ZP_06551275.1| LysR family transcriptional regulator YhjC [Klebsiella sp. 1_1_55]
 gi|206568302|gb|ACI10078.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|289775697|gb|EFD83697.1| LysR family transcriptional regulator YhjC [Klebsiella sp. 1_1_55]
          Length = 299

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 136/300 (45%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AAE L L + S+SRQI  LE+ +G++L +R  R + LT+
Sbjct: 1   MDKIHAMQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+      Q      SG+LR+   +   + L+  +L  FL  YP 
Sbjct: 61  DGMVYYERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKLVIPHLPTFLQQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+   ++ S LI R L  +     A+P YL     P 
Sbjct: 121 IELELSSSDRLVDVIREGFDCVVRVGA-LKDSGLIARPLGKLTQINCASPDYLARFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+++L  H LI +   +      F     +D  +   +    L VNS  +    C+ G G
Sbjct: 180 SLEDLADHALIHYASTLGVRPPGFE--VVIDGAVRWIKTGGILTVNSTETYQAACIAGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  +P   V++     +L  I+         V   YP     + ++  F  ++    +D+
Sbjct: 238 IIQVPRTGVREALRAGDLTEILPQYRAEPLPVSLIYPHRRNLSRRVHLFMEWLGGLMKDY 297


>gi|288961975|ref|YP_003452285.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914255|dbj|BAI75741.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 297

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 135/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A   SF  A  +L +S S++ + I+ LE   G +LF+R  R ++LTE
Sbjct: 1   MDSLSSLIAFVQAAEDLSFVAAGRKLGISASAVGKSIAKLEESAGTRLFHRTTRRVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  H     +   L   +  L  ++  P G+LR++    +G + L   + EF  LYPD
Sbjct: 61  EGAAFHERCRRILDDLRDAETMLSNATGIPRGRLRVSVP-TIGYHFLLPVIPEFRRLYPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  +++ ID+  +  D  IR   P+  SSL+ R+L        A+P YL+    P 
Sbjct: 120 IELDIDFNDRLIDVVEEGLDAVIR-SGPLTDSSLMSRRLGPFRFVLCASPSYLERKGIPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + EL+KH+ + F       ++ + +           R S L  N+  ++      G GI
Sbjct: 179 HLHELEKHDCLRFRFPTSGKIQAWRFRDAAGVDPFR-RPSPLTCNNMEALRGAATAGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +PD++ +D+     L  +++  +         +P     + +L+ F + +
Sbjct: 238 AYMPDFLARDDVDAGRLHTVLDAHLVDQGQFSILWPSNRLVSPRLRTFIDHM 289


>gi|162451523|ref|YP_001613890.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161162105|emb|CAN93410.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 311

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 139/293 (47%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + +      +GSF+ AA +L ++ S++SR++  LE E+G+ L  R  R L LT+ G
Sbjct: 3   SLAAIELLVATVEAGSFSRAARRLGVTPSAVSRRVMRLEQELGVALLARTTRSLRLTDDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  +L      +  +S KP G LR+   + LG++++  +L  F   YPD++
Sbjct: 63  QAFYARCVRIVEELGEATEAIARASKKPVGLLRVDAPVALGRDVIAPSLPRFAARYPDVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L ++ +D   +  D  +R+  P+  SSL+ R+L    +   AAP Y+     P + 
Sbjct: 123 INLTLRDQHVDPVAEGLDLLVRIG-PLGDSSLVARRLGASRLVHCAAPSYIARRGAPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  H+ + +  L       F +L      + E  IS     N    +    + GSGI 
Sbjct: 182 ADLAGHDCVGY--LRDGRPTGFRFLTGDGDAVLEVPISGPFHANDVDVLRHLAIAGSGII 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + D++ KD      LV ++++  T ++ ++  YP+      K++ F +F+  
Sbjct: 240 AMFDFLAKDALAEGTLVTVLDEFPTTTWPIHALYPKNRHLLPKVRVFVDFLAE 292


>gi|330828926|ref|YP_004391878.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328804062|gb|AEB49261.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 300

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V    SFT AA QL +S +  S+ +  LE  +  +L  R  R +  TE G   
Sbjct: 6   AMRTFIKVVECQSFTKAANQLGISVAMASKLMQQLEESLATRLLSRTTRQVNPTEAGQFY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++ +  +  +LE T  +L   + +P+G L+++  +D G   L   L  F   +PD+++ +
Sbjct: 66  YQRSLALLAELEETHSQLTHHNQQPNGTLKLSVPMDFGYLHLSPALPLFRQRFPDLKLDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ + +  +  D A+R+   +  SSL+ R+L TI +   A+P YL     P   ++L
Sbjct: 126 EYSDRRVALVEEGFDLALRIGH-LSDSSLVARQLATIRVELCASPAYLARKGRPGKPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ + +    P+            RP G      L+ N+ +++ +      GI L P 
Sbjct: 185 KQHDCLIYTLTQPEWHFKRGSEQQSIRPQGP-----LRANNGVALTRAACDDQGIILQPT 239

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +IV +   +  LV ++ +       +Y  YP     + K++ F  F+  +
Sbjct: 240 FIVGEALRSGQLVSLLPEWDKGDVGLYAVYPHRRFVSAKVRCFIEFVQER 289


>gi|262044679|ref|ZP_06017731.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037943|gb|EEW39162.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 305

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 137/296 (46%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT 
Sbjct: 1   MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  +++  + EL  S  +P+GKLRI+  + +G  LL   L  F  LYP 
Sbjct: 61  EGAAFLTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFSRLYPQ 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ +++  +  D AIR  + +  S LI RKL        A+P YL     P 
Sbjct: 120 VELDLDFSDRLVNLIDEGVDVAIRSGE-LADSRLIARKLGGFRFVLCASPTYLAEYGVPG 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
           S  EL  H  I F    P       W     R  G+ R  + + VN+  + ++    G G
Sbjct: 179 SPAELAAHKCIFF--RFPATGLIQPWELRGMRLTGDFRSAAVMTVNNIEAAIRLSAAGMG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA +PD++V+   D   L  ++             +P +   + +++ F +FI   
Sbjct: 237 IAYVPDFVVREAMDEGQLQEVLPGCCVKDGHFSVLWPASRYLSPRIRCFIDFIAAA 292


>gi|288933113|ref|YP_003437172.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288887842|gb|ADC56160.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 299

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AAE L L + S+SRQI  LE+ +G++L +R  R + LT+
Sbjct: 1   MDKIHAMQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+      Q      SG+LR+   +   + L+  +L  FL  YP 
Sbjct: 61  DGMVYYERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKLVIPHLPTFLQQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+   ++ S LI R L  +     A+P YL     P 
Sbjct: 121 IELELSSSDRLVDVIREGFDCVVRVGA-LKDSGLIARPLGKLTQINCASPDYLARFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+++L  H LI +   +      F     +D  +   +    L VNS  +    C+ G G
Sbjct: 180 SLEDLADHALIHYASTLGVRPPGFE--VVIDGAVRWVKTGGILTVNSTETYQAACIAGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +P   V++     +L  I+         V   YP     + ++  F  ++
Sbjct: 238 IIQVPRTGVREALRAGDLTEILPQYRAEPLPVSLIYPHRRNLSRRVHLFMEWL 290


>gi|241765628|ref|ZP_04763582.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241364536|gb|EER59608.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 307

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 142/298 (47%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R +  V  +GSF  A +   LS+ ++SRQ++ LE  +G +L  R  R L++T+
Sbjct: 1   MDALQAMRTYVAVVDAGSFVGAMDATGLSKPAVSRQVADLEAALGGRLLQRTTRRLSMTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   ++   +E    E+  S+V+  G+LRI   +  G   L      F    P 
Sbjct: 61  EGRTYYQRCKDILQAVEEANAEVAASTVQAHGRLRIGAPLTFGVIHLAPLWGRFAAENPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++L ++ +D+  +  D  +R+ +P+  S+LI R+L    M   A+P YL     P 
Sbjct: 121 VTLDIVLSDRVVDLVEEGYDLVVRIGRPM-DSNLISRELARSGMALCASPGYLARRGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H++I++     +  +++++     + I     S +  N+  +     +   G+
Sbjct: 180 HPHDLIRHDVISYS--YSRFGDEWSFEGPQGKVIVHVN-SRIHANNGDTCRVAALADQGV 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            L PD++V +   +  L++++ D      ++   YP   +   K++   +F+    RD
Sbjct: 237 ILQPDFLVHEDLRDGRLIKLLPDFRLHELSIQALYPTRKQLPLKVRKLIDFLVEALRD 294


>gi|15596398|ref|NP_249892.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100650|ref|ZP_01364568.1| hypothetical protein PaerPA_01001676 [Pseudomonas aeruginosa PACS2]
 gi|116049149|ref|YP_792049.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892822|ref|YP_002441691.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234334|ref|ZP_04927657.1| hypothetical protein PACG_00174 [Pseudomonas aeruginosa C3719]
 gi|254239568|ref|ZP_04932890.1| hypothetical protein PA2G_00185 [Pseudomonas aeruginosa 2192]
 gi|313106176|ref|ZP_07792429.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9947128|gb|AAG04590.1|AE004550_6 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115584370|gb|ABJ10385.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166265|gb|EAZ51776.1| hypothetical protein PACG_00174 [Pseudomonas aeruginosa C3719]
 gi|126192946|gb|EAZ57009.1| hypothetical protein PA2G_00185 [Pseudomonas aeruginosa 2192]
 gi|218773050|emb|CAW28862.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310878931|gb|EFQ37525.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 304

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + ++ F  V   GS + AAE++ LS+S IS+++S LE  +G++L YR  R +  T
Sbjct: 1   MSLRLEDIQAFLNVVELGSISAAAERMSLSKSVISKRVSDLERHLGVRLLYRSTRNVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++        L      +        G+LR+   +  G   L   + EF+   P
Sbjct: 61  EAGGFFYKSAKASLQDLNNAAESVALRENDLCGELRVMAPMSFGTLWLGPLVMEFMARNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L LD++ +D   +  D AIR+ + +Q SSLI R+L T       +P YL+     
Sbjct: 121 RLEVVLQLDDRIVDFEKEGYDLAIRITR-LQDSSLIARQLGTSRRVVCCSPEYLERHGPL 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I+++  H  I +    P  +  F      +             N+  ++    V G G
Sbjct: 180 QRIEDILCHPCIGYSHNTPSQLWSFEPRVAGEPARMITPRGRFNTNNGQTMRDAAVRGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP +I  ++     LV  +         +Y  Y  A   + K+K F  F+
Sbjct: 240 LAMLPLFIAAEDLAAGRLVEALPQERPLDDLIYAMYSRAATLSPKVKLFVQFL 292


>gi|167561024|ref|ZP_02353940.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 351

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEHLVEHPCLSLPS---EYWGDERVFTGPDGEVRVRPSNIVVANNTEMLRQFAMLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ +   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGKLVRLLSEYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|117617497|ref|YP_854885.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117558904|gb|ABK35852.1| transcriptional regulators, LysR family [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 300

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 142/298 (47%), Gaps = 7/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +   +   +   GSFT AA++L ++++++SR+I+ LE  +G++L YR  R LTLTE 
Sbjct: 1   MDLNAALILVRIVDKGSFTAAAQELGMTKATVSRRIAELEQRLGVRLLYRSTRQLTLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +   S+   +L   ++ +  S  + +G L++A  I+ GQ ++   + EFL  YP +
Sbjct: 61  GEQYYLRCSKAVDELAQAELMVSASQQEVTGTLKLAVPIEAGQLVVGRLVAEFLQAYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L L N+ +D   +  D  +R+   +  S+L  R+L +      A+P YL        
Sbjct: 121 QVELELTNRIVDPINEGLDAIVRIGD-MSDSNLAARRLWSNARLICASPAYLARSPAITH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H  +            F      D+ +     S  +VN+     +    G G+A
Sbjct: 180 PEDLVHHERVAVTSGFLASHWCFE---RDDKEVLVDPPSRFRVNNITCAREAAKAGLGLA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LP  +  +   +  LV ++ +   P   +Y  +PE      KL+ F +FI  K  D+
Sbjct: 237 SLPAMLCHEELASGTLVSVLPEWQQPRVPIYLLFPERRLMPRKLRVFIDFIVAKGADY 294


>gi|317403588|gb|EFV84079.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 300

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GS T AA +  +S +  ++ I GLET +G++L  R  R  +LTE G   +
Sbjct: 1   MEIFVAVVELGSLTAAAARHEMSAAMAAKHIKGLETRLGLRLMNRTTRRQSLTEAGQAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +   +   V P G LRI +T+  G   L   + ++L LYPD+ ++L 
Sbjct: 61  SRCKAILADIREAEQGAEALRVAPRGNLRITSTVSFGSFALAPAIADYLNLYPDVSVELA 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D A+R+ +P + S L+ R + T  M   AAP YL     P +  +L 
Sbjct: 121 LSDAVEDLVASRYDLAVRIGEP-RDSGLVARPIGTYQMIICAAPAYLARHGTPEAPADLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + F     +           D     P  S    N+  ++ Q  + G GI L P+ 
Sbjct: 180 RHQCLDFSYWSRRTGWRLGGPEGADADF--PPTSRFIANNGQALRQAALAGFGIVLQPEL 237

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ ++     LV I++     +  V   YP+  +   KL  F  F+  +
Sbjct: 238 LLAEDVRAGRLVPILQSYWPAARPVTLLYPKDRQALPKLTTFVEFVVAR 286


>gi|156936316|ref|YP_001440232.1| hypothetical protein ESA_04216 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534570|gb|ABU79396.1| hypothetical protein ESA_04216 [Cronobacter sakazakii ATCC BAA-894]
          Length = 299

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA   SFT AAE L L + S+SRQ+  LE+ +G +L +R  R + LT+
Sbjct: 1   MDKIHAMRLFVRVAELESFTRAAETLSLPKGSVSRQVQALESALGTRLLHRTTRRVHLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+             SG+LR+   + + QN++   L EFL  YP 
Sbjct: 61  DGQVYYERARDLLANLDELDGLFLHDPASVSGRLRVDMPVAVAQNVVIPRLPEFLHHYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L   ++ +D+  +  DC +R+ + ++ S L+ R L  +     A+P YL     P 
Sbjct: 121 IALELSSSDRLVDVVREGFDCVVRVGQ-LKDSGLVARPLGKLSQVNCASPDYLARFGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H L+ +   +      F  +         P    L VNS  +    C  G GI
Sbjct: 180 TLDDLASHALVHYTPTLGTRPAGFE-IGRESGSEWIPTGGVLTVNSTETYQAACFAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++   +  LV ++         V   YP     + ++  F  ++
Sbjct: 239 IQVPRIGVREALRSGKLVEVLPQYRAAPMPVSLIYPHRRHLSRRVHLFMEWL 290


>gi|161524400|ref|YP_001579412.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350845|ref|YP_001946473.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221198354|ref|ZP_03571400.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221208293|ref|ZP_03581297.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221215425|ref|ZP_03588389.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160341829|gb|ABX14915.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189334867|dbj|BAG43937.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221164609|gb|EED97091.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221171941|gb|EEE04384.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221182286|gb|EEE14687.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 301

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFVAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LRI      G+  +   + +F   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRITAPAGFGRRHVAPLVPDFSGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ EL +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G
Sbjct: 180 TLAELARHNCLA---LAANANQQRGWTFQEDDKVVSIRVSGTMECSDGAVLHEWCLAGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V D+     LV +++    P   ++  +P+      +++ F +++
Sbjct: 237 LAWRSWWEVGDDIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDYL 289


>gi|89095356|ref|ZP_01168272.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
 gi|89080361|gb|EAR59617.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
          Length = 298

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 131/295 (44%), Gaps = 8/295 (2%)

Query: 2   SFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D    +R F  V    SF+ A+  L+L  S++SRQ++ LE      L YR  R + LT
Sbjct: 4   KIDLVKAMRTFLEVVEHMSFSEASRALNLVVSAVSRQVADLEKHFDCTLLYRTTRSMKLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G        +V  +LE  +    E + K  GKLRI    ++ Q  LQ  L  F+  YP
Sbjct: 64  PEGEFYLEKFRQVIEQLEALESSKSERTNKIQGKLRITAPFNIDQLGLQHQLAAFMRQYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I  +L N+ +++  +  D A+R+   ++ S  I RK   + +   A+P YLK   EP
Sbjct: 124 DVSISWVLVNRYVNLIEEGFDLAVRVGD-LEDSGFIARKYGLLEVDFVASPDYLKTHGEP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +    +       +      ++         L VN    +  +   G G
Sbjct: 183 KHPKDLSEHQCLIDSSIRQPGRFSY---MENNKQHQVSVKGALDVNQGRILADFAAAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA LPD+++K   D+  LV +++    P   +   YP A      L+A   F+  
Sbjct: 240 IAQLPDFLIKDYIDSGQLVPVLQAYKLPPRDISLVYPAAKLTNPTLRALIEFLLE 294


>gi|238896067|ref|YP_002920803.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548385|dbj|BAH64736.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 294

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT 
Sbjct: 1   MDRIQAMQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +      E+   +E ++  L ES  +P G+LR+     +   ++  +L +F   YPD
Sbjct: 61  EGMQYLAQCREILALIEHSESTLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + + ++ +D+  +  DC IR  + + +SSL+ R L        A+P YL+    P 
Sbjct: 121 IYLMIGVSDRQVDLIQEGVDCVIRTGE-LNNSSLVARPLGHFRWVTCASPDYLREYGVPP 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L +H  + +     +  ++F ++         P      VN     ++ C+ G G+
Sbjct: 180 SPEALSQHRAVHYFSGQARRADEFRFVRH-GETFSVPVSGNAAVNETGLYIKMCLAGFGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A L + IV D+     LV ++ D   P   V   YP     +  ++AF  ++  
Sbjct: 239 AQLAENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWMSE 292


>gi|115360820|ref|YP_777957.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286148|gb|ABI91623.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 294

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 139/296 (46%), Gaps = 10/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVSTVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLAAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRIGA-LEDSTLIARPLGAWKMIACASPAYLKRQGTPDT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L  H  + +G           W   +D       +   L  N+   +    + G GI
Sbjct: 180 PADLAAHTCLLYGRE-----RRVGWEFRIDGAARTFDVQGPLVANNGEVVRDAAIAGLGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP +IV    D+  LV +++       T+   +P+  +    L+ F  F+  + 
Sbjct: 235 ALLPHFIVGAALDSGALVPVLDAYAPSPITLNAVFPQHREGFVTLRTFIGFLAERL 290


>gi|317053409|ref|YP_004119176.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953148|gb|ADU72620.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 295

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 137/294 (46%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT 
Sbjct: 1   MDSFTSLTSFVRTAEALSFVEAARSLGISASAVGKNVARLENKLGVRLFNRSTRNVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      +  +L   + EL  +  +P+GKLR++  + +G  LL   L  F   YPD
Sbjct: 61  EGVVLLARCQHILEQLREAEAELTSTVEQPAGKLRVSLPV-IGYRLLLPLLPAFTQRYPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ ++I  +  D AIR  + I  S L  + L   +    A+P YL     P 
Sbjct: 120 IELELDFSDRLVNIIDEGFDVAIRSGE-IADSRLTAKTLGNFNFVLCASPAYLDAHGAPA 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S +EL  H  + F       ++ +            P  S L  N+  ++++    G GI
Sbjct: 179 SPEELSNHKCVLFRFPATGLIQPWELREMRITGDFNP-ASVLTANNIEAVIRISTSGLGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + +PD++V++      L  ++        T    +P +   + +++ F +F+  
Sbjct: 238 SYVPDFVVREAFNQGELKEVLAGSCIKQGTFSALWPTSRYLSPRIRCFIDFMAE 291


>gi|330445750|ref|ZP_08309402.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489941|dbj|GAA03899.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 300

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 141/292 (48%), Gaps = 8/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  V   GSF+  AE  ++++S +S++IS LETE+G++L YR  R LTLTE G 
Sbjct: 4   IDDLVLFTQVIEHGSFSKVAELNNVTKSVVSKRISKLETELGLQLIYRTTRKLTLTEPGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+     + H  +     +   S   SGK+R++     G+ +L   + +F   +P + +
Sbjct: 64  VLYHRAKSISHVAQAAFDSVTGYSEALSGKIRMSVPTISGELVLANAVADFCQRHPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ LDN  +D+  D  D  IR    ++ SSLI R +        A+P Y+++  +P   +
Sbjct: 124 EMSLDNHFVDLVADNYDLVIRTGY-LEDSSLIARHIFNSRWVICASPAYIEHYGKPEKPK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +    P+    F+W       +   ++S     ++  ++ +  + G+GIA 
Sbjct: 183 DLLSHNCLGYN---PQSTGPFDWQFLKQNKVYTQKVSGNFSSDNAAALKKVVLAGNGIAY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP+ ++ D      LV ++         +Y  YP   K   +++A    I  
Sbjct: 240 LPNCLIYDELQRGELVELLPTHAGKVVGIYAVYPYTRKPAKRIQALIEHIRE 291


>gi|113869640|ref|YP_728129.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528416|emb|CAJ94761.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 315

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 135/295 (45%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GSF  AA+QL +S + ++R ++ LE+ +G +L  R  R L+LT+
Sbjct: 1   MDRLQSMRVFSKVVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++   +E  +  +   S   SG LR+ T +  G +LL   L  F  LYPD
Sbjct: 61  AGETYLQRCQQILEDVEEAESVVTARSQSLSGTLRLVTPVMFGLHLLPELLARFQQLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   +IL ++++DI  +  D A+ L      S L+ R L++  +   A+P Y+       
Sbjct: 121 VVFDVILSDRNVDIVEEGRDVAVMLSDLGLGSHLVARPLLSAEVILCASPGYVAAHAPIR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  H  I     +P    ++  L   +  +  P  S L  ++     Q  +   G+
Sbjct: 181 HAHELSHHRCIAM--RLPSAEHEWT-LLGPEGEVTVPIRSGLLCSNAELAHQAALADMGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+L  Y+ +   ++  LV ++     P   V   YP       K++AF +F+  +
Sbjct: 238 AMLSSYLARPNIESGKLVHVLPQYQLPRRDVSVVYPSRKFLPTKVRAFIDFLLEE 292


>gi|170695208|ref|ZP_02886355.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170139828|gb|EDT08009.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 336

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE G+
Sbjct: 4   LQSMRVFVKVADLGSFVRAANALDLSTAVVTRHVADLEARLGARLLNRTTRRLSLTESGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   LE  +  L     +P G LRI   +  G   L   ++ +   YPD+  
Sbjct: 64  TYLERVRHLLDDLEGVEQMLAARHHEPVGTLRIVAPVVFGLQSLAPAVQSYAARYPDVVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++  D+  +  D  I + +P +S+S++ R+L T  +   A P YL     P    
Sbjct: 124 DVTLADRQADLVEEGFDVGIMVGRPARSASIVTRRLTTCQLTVCATPAYLAQHGTPTRPD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  +      P+   +    +  +  +     + +  N+   + Q+ +LG G+A+L
Sbjct: 184 DLLRHPCL---SRAPEQGGEERVFSGPEGLVRVRTTNAIAANNSEMLRQFALLGMGVAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P Y++  +     LV ++ D   P   +   YP  L    K++ F + +  
Sbjct: 241 PSYLIGRDLASGRLVELLGDYRLPEIEITIVYPSRLHLPAKVRTFVDHLVE 291


>gi|152971493|ref|YP_001336602.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262043868|ref|ZP_06016957.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330013114|ref|ZP_08307568.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150956342|gb|ABR78372.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|259038802|gb|EEW39984.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533594|gb|EGF60311.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 288

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 137/288 (47%), Gaps = 5/288 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT +G +  
Sbjct: 1   MQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTPEGMQYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +E ++  L ES  +P G+LR+     +   ++  +L +F   YPDI + + 
Sbjct: 61  AQCREILALIEHSESTLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC IR  + + +SSL+ R L        A+P YL+    P S + L 
Sbjct: 121 VSDRQVDLIQEGVDCVIRTGE-LNNSSLVARPLGRFRWVTCASPDYLREYGVPPSPEALS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + +     +  ++F ++         P      VN     ++ C+ G G+A L + 
Sbjct: 180 QHRAVHYFSGQARRADEFRFVRH-GETFSVPVSGNAAVNETGLYIKMCLAGFGLAQLAEN 238

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IV D+     LV ++ D   P   V   YP     +  ++AF  ++  
Sbjct: 239 IVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWMSE 286


>gi|84386214|ref|ZP_00989243.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84378984|gb|EAP95838.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 297

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 138/297 (46%), Gaps = 9/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  V +  SF  AA +L +S+S++++++  LE+ +G++L +R  R ++LTE G 
Sbjct: 4   LDAIPYFLAVVKQSSFAGAARELGVSRSAVNKRVIQLESSLGVRLLHRTTRQVSLTESGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +   ++  + L+  +        +  G LR++  +  G+ +L   + +FL  YP I I
Sbjct: 64  QFYDHLTKANYWLQKAEDAATSQQNQAIGTLRVSAPMSFGRLVLAPLIPQFLKRYPHIHI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--EPLS 182
            + +D+  +DI     D AIR    +  SSL+ ++L ++     A+P Y        P  
Sbjct: 124 DMTMDDGYVDIVEGGYDVAIRAGD-LNDSSLVAKRLTSVRSVICASPTYFDENGLSIPTE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I EL  HN + +            +    D+          +VN+  +++   + G GIA
Sbjct: 183 ICELSAHNALLYRHTSESAEW---FFGHQDQVTSVVVKGNYRVNNSEALLCATMAGLGIA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LPD+I      +  L+ ++   + P   VY  +PE      KL+ F +F+     D
Sbjct: 240 RLPDFIANAPIQSGELLPLLPSYLMPEKNVYALFPERDPMPLKLRLFIDFLADSLND 296


>gi|15597628|ref|NP_251122.1| bistable expression regulator, BexR [Pseudomonas aeruginosa PAO1]
 gi|107101883|ref|ZP_01365801.1| hypothetical protein PaerPA_01002928 [Pseudomonas aeruginosa PACS2]
 gi|218891586|ref|YP_002440453.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235443|ref|ZP_04928766.1| hypothetical protein PACG_01352 [Pseudomonas aeruginosa C3719]
 gi|254240869|ref|ZP_04934191.1| hypothetical protein PA2G_01543 [Pseudomonas aeruginosa 2192]
 gi|296389157|ref|ZP_06878632.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313110653|ref|ZP_07796523.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9948478|gb|AAG05820.1|AE004670_8 bistable expression regulator, BexR [Pseudomonas aeruginosa PAO1]
 gi|126167374|gb|EAZ52885.1| hypothetical protein PACG_01352 [Pseudomonas aeruginosa C3719]
 gi|126194247|gb|EAZ58310.1| hypothetical protein PA2G_01543 [Pseudomonas aeruginosa 2192]
 gi|218771812|emb|CAW27589.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310883025|gb|EFQ41619.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 304

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 132/293 (45%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  +D +  F  VA   S T AAE++ LS+S IS+++S LE  +G++L YR  R +  T
Sbjct: 1   MSLRFDDIEAFLNVAELNSVTSAAERMSLSKSVISKRVSDLERRLGVRLLYRTTRNVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++       +L      +        G+LRI T +  G   L   + +F+  +P
Sbjct: 61  EAGHFFYKAAKASLQELNNAAEIVALRENDLCGELRIVTPMSFGTLWLSPIIADFMSQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L +D++  D   +  D +IR+ + +  SSLI R L         +P Y +     
Sbjct: 121 RLEIVLQMDDRLTDFEKEGYDLSIRVTR-LDDSSLIARPLANSQRVVCCSPDYAERHGTL 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L +H  + + +  P  +  F       +P           N+  ++    + G G
Sbjct: 180 DTLEQLMQHECLGYNNATPSQVWTFEPAFPGAKPRAVSPRGRFSSNNGQAMRDAALRGQG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +ALLP +IV ++     LV     +      +Y  Y  A   + K+KAF   +
Sbjct: 240 LALLPLFIVAEDLKNGRLVDAAPGLRPLDDVIYAMYSRAAAMSPKVKAFIQHL 292


>gi|239815542|ref|YP_002944452.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802119|gb|ACS19186.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 304

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 144/299 (48%), Gaps = 10/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  V  +G+FT AA+ L L + ++++QI  LE+ + +KL  R  R +T+T 
Sbjct: 1   MDQIQAMRIFVRVVEAGTFTRAADSLALPKGTVTKQIQALESRLRVKLLNRTTRRVTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   + + +  +  +  +  +   P+G+LRI     + + ++   L  F   YP+
Sbjct: 61  DGAAYYERAARLLNDFDDIEASMTNAQANPTGRLRIDVGTSVARQIILPALATFCDRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L + ++ +D+  D  DC IR  + +   SL+ R++ T+H    A+P Y+K    P 
Sbjct: 121 IQVDLGVSDRTVDLISDNVDCVIRAGE-LSDQSLVARRIGTLHFVTVASPAYVKRYGIPQ 179

Query: 182 SIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +++ +H+++++     + +    +    D  I       + VN   + M   + G G
Sbjct: 180 HPNDIEKRHHVVSYFSGTTRRIYPHEFRKG-DEYIELNGPYRVSVNESNAHMAAVLGGFG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLK 293
           I+    ++ +    +  L+ ++ D       ++  YP     + K++AF ++   +F K
Sbjct: 239 ISQCITFMAEPLLASGELIEVLPDWQREPLPIHVVYPPNRHLSAKVRAFVDWAAELFAK 297


>gi|254247369|ref|ZP_04940690.1| Glycine cleavage system transcriptional activator [Burkholderia
           cenocepacia PC184]
 gi|124872145|gb|EAY63861.1| Glycine cleavage system transcriptional activator [Burkholderia
           cenocepacia PC184]
          Length = 294

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 137/289 (47%), Gaps = 7/289 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S+I ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  +++  + EL +S   P G+LR++        LL   L +F+  YP+I++ +   
Sbjct: 69  CRRVIAEIDAAERELTQSVEAPRGRLRVSLPT--IGTLLLPVLADFMAAYPEIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R   P   S L  R L     H  A+P YL+    P +  +L  H
Sbjct: 127 DRIVDVIDEGFDVVLRTGHP-TDSRLSSRLLGHFRQHLVASPDYLERHGAPRTPADLALH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +   A       E  +S +  N+  + + + + G GIA LP++ V
Sbjct: 186 RCLHYRFPSSGKLEIWPLRAPRAGTPPEVPVS-MVSNNAETRLCFALRGLGIACLPEFFV 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +D   +  L  +++D +      Y  +P       KL+AF +++    R
Sbjct: 245 RDTLADGRLRAVLDDHVASRTPFYVLWPSGRHPLPKLRAFVDYMAEHLR 293


>gi|300717415|ref|YP_003742218.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299063251|emb|CAX60371.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 304

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 141/297 (47%), Gaps = 7/297 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +    +  F    ++GS+THAA  L L++S+I + I  LET +G++L  R  R L+L
Sbjct: 1   MEINSIGDIAAFVAAVKAGSYTHAAGSLGLTRSAIGKSIVRLETRMGVRLLNRTTRSLSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G  ++    ++   LE     +     KPSG LR++  +  GQ  +   L  +L  +
Sbjct: 61  TDEGRVMYDRCRQILDDLEEVDAAMAMRRGKPSGTLRLSAPLSFGQRHILPVLDAYLKKW 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+++ ++   ++ +D+  +  D AIR+ +P   S ++ R + +  +   A+P YL     
Sbjct: 121 PELRAEVSFTDRFVDLIEEGFDIAIRIGEPRDDSRILTRTIASQRIVTCASPQYLSLRGA 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  EL  H+ I       +    F   AT +          L ++S  ++    + G 
Sbjct: 181 PKTPAELTGHDTIFLLSAEKRRSWHF---ATPEGTFVYEGPGRLNLDSSEAMRASAISGF 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  LP Y++ D+     LV ++E+   P   V   YP     + +++AF + +  +
Sbjct: 238 GIVHLPTYLLADDVRSGKLVPVLEEYPFPPEPVRIIYPSKRHLSPRIRAFIDLLVER 294


>gi|172065228|ref|YP_001815940.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997470|gb|ACB68387.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 305

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AAE LH+S++++++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMRAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVRLLNRTTRRINVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   + +   ++  +  L  +S  P G+LR+       + +L   L  FL  YPD
Sbjct: 61  DGIAYYERVTRLLADMDDAETSLSSASAVPRGRLRVDVPSPFARLILIPALPAFLARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +DI  +  DC +R  +P    S++ R++  + +   A+P YL     P 
Sbjct: 121 IQLDMGVSDRTVDIIGENVDCVVRGGEP-NDQSMVARRVADLSLGIVASPGYLALASTPS 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              EL    H ++ F       +     +   D  +       L V+   + +   V G 
Sbjct: 180 HPAELENSHHRIVGFSWGRTGKLYPLV-MHRGDETVAVQGRYALAVDDGNAYLAAGVAGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP Y+ K   +   LV + +D       +Y  YP     + KL+AF +++  
Sbjct: 239 GIMWLPHYMAKAHLERGELVTLFDDWQLDPMPLYIAYPPNRHVSAKLRAFIDWVVE 294


>gi|221201853|ref|ZP_03574890.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221207641|ref|ZP_03580649.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221214663|ref|ZP_03587633.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221165553|gb|EED98029.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221172487|gb|EEE04926.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221178273|gb|EEE10683.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 349

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTEQFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLAEHPSLSLPT---EYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGGDIARGALVRLLPDFKLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|271499563|ref|YP_003332588.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343118|gb|ACZ75883.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 303

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 148/292 (50%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +   VF  VA + SF  A   L +S S++ + +  LE ++G++LF+R  R +TLT 
Sbjct: 1   MDSLNGFVVFVQVAETRSFVAAGRLLGVSASAVGKSVVRLEEKLGVRLFHRSTRSITLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS     +  +  ++E  ++EL +++  P G+LR++    L  +L+   L EF+  YP+
Sbjct: 61  EGSLFLERSRRILAEIEAAELELSQATAAPRGRLRVSLP--LVSSLVLPVLGEFMREYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++ +D+  +  D  +R  +P   S L  R+L T  M   A+P YL     P+
Sbjct: 119 IELDLDFTDRMVDVVEEGFDAVVRTGEP-ADSRLSARRLGTFEMQLVASPDYLARRGTPM 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H+ + +       +E++    T   P  +   S +  N+  + + + + G GI
Sbjct: 178 LPADLRQHSCLHYRWPNSGKLENWALRQTPGEPEWQLPTS-MICNNIETRVCFALQGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LPD+ +++   +  L  I+ + +  S   +  +P +   + K++A  +F+
Sbjct: 237 AYLPDFAIREPLADGRLKPILAEYVQHSGVFHVLWPASKHPSPKVRALVDFL 288


>gi|152968797|ref|YP_001333906.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262044058|ref|ZP_06017138.1| contact-regulated protein A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330005763|ref|ZP_08305375.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150953646|gb|ABR75676.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|259038630|gb|EEW39821.1| contact-regulated protein A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328536131|gb|EGF62519.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 301

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 136/294 (46%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++ +F  V  SGSF+ AAEQL  + S++SR +  LE+++G+ L  R  R L+LT
Sbjct: 1   MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + +L E+   P G LR+     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRMQVVLQEMAAAENDLLETRTTPRGLLRVDAATPVMLHFLMPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIVASPDYVARYGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H+ + F + +        W  +          + +  NS  ++ Q C+ G+G
Sbjct: 180 QHPSDLKQHHCLGFTEPVSLN----TWPVSCCDGQLLEIEAAVSSNSGETLKQLCLTGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L DY+V     +   V ++ D   P        Y      + +++AF +F+
Sbjct: 236 IACLSDYMVDKEIASGEFVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFL 289


>gi|92118745|ref|YP_578474.1| LysR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801639|gb|ABE64014.1| transcriptional regulator, LysR family [Nitrobacter hamburgensis
           X14]
          Length = 303

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 128/300 (42%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F  V  +G F+ A  +L++S + +S  I  LE  +G++LF R  R ++LTE
Sbjct: 1   MDRLTGLTAFVRVVETGGFSAAGRRLNMSTTMVSNHIQALEDRLGVRLFNRTTRKVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   +E           KP G LRI     + Q  +   L ++L  YPD
Sbjct: 61  VGKTYYERCVQILADIEQADDIAGALQTKPRGTLRIHCATHIVQ-FVAPILADYLKSYPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L +    +D+  +  D ++RL  P   SSLI R L T       +P YL      L
Sbjct: 120 VTANLTIAEHAVDVIAEGFDLSVRLTPP-PDSSLIVRSLATWRHVLCCSPEYLTEHGPLL 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L  HN +     +     D+++  T  + +       L  NS  ++    + G G+
Sbjct: 179 QLADLAGHNCLRHA--LYPYENDWHFTDTTGKTVSVRVSGNLITNSGETLRAAALRGVGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            L   ++V D+     LV ++ D     F +   YP     + K++ F + +   + D +
Sbjct: 237 FLAAGFLVTDDLPSGRLVPLLPDYTPVEFAMNVVYPHRHHLSAKVRMFIDLLAQHSADHQ 296


>gi|307249905|ref|ZP_07531879.1| hypothetical protein appser4_7030 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858094|gb|EFM90176.1| hypothetical protein appser4_7030 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 298

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 136/292 (46%), Gaps = 11/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE
Sbjct: 1   MDKLNAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+
Sbjct: 61  AGLLYYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P 
Sbjct: 121 IQLNIEFSDRRVDVVAEGYDLVLRIG-TLEDSSIVAKRIARSELVLIASPDYLAKQGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++++L +H  + + +       D       D+ +     + +  N+  +++Q    G GI
Sbjct: 180 NLEQLTEHTCLIYENHQQWQFTD------GDQKVKIKPNAHVISNNGYALLQMTKAGQGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++ K++     L+ I+      S  +   YP     + K+K    F+
Sbjct: 234 VNLPLFLAKEDINAGRLIEILPQYKQHSIDISVLYPHRRYLSPKVKVLIEFL 285


>gi|167568286|ref|ZP_02361160.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 351

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P+
Sbjct: 121 VIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPM 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEHLVEHPCLSLPS---EYWGDERVFTGPDGEVRVRPSNIVVANNTEMLRQFAMLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ +   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGKLVRLLSEYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|91792145|ref|YP_561796.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91714147|gb|ABE54073.1| LysR, substrate-binding [Shewanella denitrificans OS217]
          Length = 303

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 138/293 (47%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R F  V   GSF+H A  L LS   +S+ +S LE  +G++L  R  R ++LTE
Sbjct: 1   MDRIDAMRAFVSVVTEGSFSHGASHLQLSPQLVSKYVSQLEVRLGVRLLNRTTRKVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++  +   ++   ++    +L     +P G LRI+  +      L   + +F + +P 
Sbjct: 61  AGTEYFQHAQQILLSIDEMDAQLGGLQQQPKGTLRISAPVSFALKHLGRLVTDFQIAHPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L+++ +DI  +  D A+R+ + ++SSSLI + +  I +   A+  YL     P 
Sbjct: 121 VNVDLQLNDRKVDIVEEGFDVALRIGQ-LKSSSLIAKHIAPIRVVLCASADYLHKHGTPT 179

Query: 182 SIQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L  H  + +  + +      ++WL    R       S L+ N+   +++  + G+G
Sbjct: 180 CAEDLKDHKYLHYSYIEMEGKASRYHWL----RGKNNQHNSKLESNNGDVLVEAAIAGAG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + L P +I  +      L+ I+ +       +Y  Y        K++ F +FI
Sbjct: 236 LVLQPTFIASEAIRQGKLIEILPECEPEPLGLYAVYAHRKLLPNKIRCFIDFI 288


>gi|56696748|ref|YP_167109.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678485|gb|AAV95151.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 311

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 105/292 (35%), Positives = 167/292 (57%), Gaps = 4/292 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+ VA +GS THA ++L+LSQS++SRQI  LE  +   LF+RHARGL LTE
Sbjct: 10  DMDWDKLRIFHAVADAGSLTHAGDRLNLSQSAVSRQIRALEESLNATLFHRHARGLILTE 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L   T  +  +L+     +++S  +  G+LR+ TT   G   L   L      YPD
Sbjct: 70  QGELLFDATKSMAKRLDAAAARIRDSEEEVFGELRVTTTFGFGTLWLAPRLAALYQKYPD 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+T+ M  YA   YL +   P 
Sbjct: 130 LKVDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMTVEMKLYATRAYLDSAGTPQ 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I ++  H LI       +          V   +     S L VN+Y  ++Q  +   GI
Sbjct: 189 DISDISAHRLICQNISAAQVGAS---AVLVQHLLAYNPSSLLTVNNYFGVLQGVLHNLGI 245

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +LPDY+ +D P+L+ ++ D+ +    VY  YPE L+++ ++ AFR+F+  +
Sbjct: 246 GVLPDYVTQDFPDLIHVLPDIKSALVPVYLAYPEELRHSQRVAAFRDFVQEE 297


>gi|332162784|ref|YP_004299361.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318606893|emb|CBY28391.1| transcriptional regulator LysR family, yafC [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667014|gb|ADZ43658.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330861051|emb|CBX71321.1| uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           enterocolitica W22703]
          Length = 300

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 148/298 (49%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V   GSF+ AAEQL  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTVKKLENKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +  ++ T + EL ++ + P G LRI     +  +++   + EF   YP
Sbjct: 61  QEGEHYFRRVQNILREMATAENELLDNQLNPKGLLRIDAATPVVLHIIAPLMAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  RKL+T + H  A+P YL+    P
Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRVG-TLQDSTLRARKLMTSYRHILASPAYLRQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L+ H  + F DL          LA  D  + E + S L  N+  +  + C+ G+G
Sbjct: 180 QTAADLEHHLCLGFNDLPTLNRWP---LAGADGQLYEIK-SDLASNNGETQRRLCLEGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++++ +    +LV I+ +   P +  +   Y      + +L+ F +FI  + 
Sbjct: 236 IACLSDFMIQQDLQRGDLVAILREHTLPVAMPINAVYYSDQAVSNRLRCFIDFINERL 293


>gi|227113957|ref|ZP_03827613.1| Regulatory protein, LysR family (Azotobacter vinelandii DJ)
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 298

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 145/296 (48%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +   VF  VA + SF  A   L +S S++ + I+ LE ++G++LF+R  R +TLT 
Sbjct: 1   MDSLNGFVVFVQVAETRSFVAAGRLLGVSASAVGKSIARLEEKLGVRLFHRSTRSITLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS     +  +  ++E  ++EL ++S  P G+LR++    L  +L+   L +F+  YP+
Sbjct: 61  EGSLFLARSRRILAEIEAAELELSQTSAVPRGRLRVSLP--LVSSLVLPVLGDFMHKYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++ +D+  +  D  +R   P+  S L  R+L T      AAP YL     P 
Sbjct: 119 IELDLDFTDRMVDVIEEGFDAVVRTGDPV-DSRLTARRLGTFRFLVVAAPEYLAQSGCPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  + +       +E +  L         P  + +  N+  + + + + G GI
Sbjct: 178 TPADLMQHACLHYRFPNSGKLEPWA-LRLPPGEPELPLPTSMICNNIETRVCFALQGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LPD+ +++      L  I+ D +  S   Y  +P +   + K++A  +F+  + 
Sbjct: 237 AYLPDFSIRELLAEGQLQPILTDYVERSGVFYVLWPSSKHPSPKVRALVDFLCARV 292


>gi|93006764|ref|YP_581201.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis
           K5]
 gi|92394442|gb|ABE75717.1| transcriptional regulator, LysR family [Psychrobacter
           cryohalolentis K5]
          Length = 288

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 134/291 (46%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             WD +  F  VA   SFT AA +L +S + +SRQ++ LE  +  KL YR  R ++LTE+
Sbjct: 1   MKWDGISEFVYVAEFESFTKAASKLAISTAQVSRQVTALEKRLNTKLLYRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +   L+  +  +     KP G++ +   +  G+  L   + +F++ Y DI
Sbjct: 61  GRVFYQHCRSILDGLDAAEQAVSNLQSKPQGRINLTAPVTYGEQQLLPLINDFMVQYSDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++   L N+ ID+     D AIR+ K +  S+++  KL        A+P Y +    P +
Sbjct: 121 EVTAFLSNQKIDLIEGGYDLAIRIGK-LSDSTMMANKLSHRTNFVCASPAYFEKYGRPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H+ +           D+      D          ++ NS  S++   + G GI 
Sbjct: 180 LDELSQHSCLL-------GTLDYWHFKEADTERNIRVSGKIRYNSGYSLVDAALKGLGIV 232

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY V+ +     L+ +++        ++  YP     + K++   +++
Sbjct: 233 QLPDYYVQKHLATGRLMTVLDGYREQEEGIWAVYPHNRHLSPKIRLLVDYL 283


>gi|322834500|ref|YP_004214527.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169701|gb|ADW75400.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 302

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 132/292 (45%), Gaps = 10/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA +  L +SS+S +IS LE  VG++L  R  R L LT  G 
Sbjct: 5   LQDMALFALVAECGSFTQAASRAGLPKSSVSHRISQLEKSVGLRLLNRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E  ++ ++     PSG+LRI +   LG  LL     EF   YPD+ +
Sbjct: 65  RYLIHCQEMMQASERAELAIRRLRDNPSGRLRITSPAGLGATLLARMNVEFQKRYPDVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  +D+  +  D A+R  KP Q SSLI R+L     +  A+P YL       S Q
Sbjct: 125 EVSVSDALVDLVQEGFDIALRTGKP-QDSSLIGRELGHSPRYLLASPAYLAQHPSLDSPQ 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ I         +   +       P           ++ L   +  + G+GI LL
Sbjct: 184 QLASHHCIAHRAWSEWVLHRGDTWHRWLLPAAH------TTDNLLYARECALAGAGITLL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P ++  D      LVR++ +       +Y  YP    N+  L  F  F+  +
Sbjct: 238 PAFLCHDEVAKGTLVRVLPEWEAEGNDLYLVYPGRKLNSPALACFIEFMLEE 289


>gi|71282316|ref|YP_267580.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71148056|gb|AAZ28529.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 296

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 148/295 (50%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L+    V  + SFT A+++L +S++ +S+ +  +E ++GI+LF R  R L LT+
Sbjct: 1   MDTLDGLKTVVAVVETNSFTAASDRLGISKALVSKYVGEVENQLGIRLFNRTTRQLALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  +       +      P G LRI+  +  G+  L   L +F+ LYPD
Sbjct: 61  SGRRYYEEAIILLEQFSAMVDNVTGEQTAPRGLLRISAPVTFGEMRLAPLLPKFIALYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+L N  ID+  +  D  +R+   +  S++I R L    +   A+P+Y +    P 
Sbjct: 121 LTVELVLTNGAIDMLEEGIDVRLRIGG-VDDSNMIARHLTNFPLVLSASPNYAQTQGLPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L +H+ I   D   +  + + +++   R       S L VNS  ++ +  +   GI
Sbjct: 180 TPEQLGEHHCII--DSNFRIGKQWPFISPKGRAETINVQSGLAVNSPQAVREIAIADGGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+ P++IV+D   +  L+R+M +  T  F ++  YP       K++ F +F+  +
Sbjct: 238 AMTPNFIVEDALADGRLLRVMPEYTTLEFGLFAIYPHRKYVARKVRCFIDFVLEQ 292


>gi|262395758|ref|YP_003287611.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262339352|gb|ACY53146.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 330

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  V   G+FT  A QL  S S++S+ I+ LE ++G++L +R  R L LTE
Sbjct: 22  MDKLSLIKLFVSVVDLGNFTAVANQLGQSPSTVSKAIARLEQDLGVRLVHRTTRQLQLTE 81

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        EV + L++++ +L +S   P G LR++  +  GQN +   + EF   YP+
Sbjct: 82  AGFNYLETAREVINLLKSSEEQLHQSIASPFGTLRVSLPLSFGQNYITPLIPEFCERYPE 141

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++   I     D AIR  + +  S+LI R+L  I M  +A+P Y+K    P 
Sbjct: 142 VKLDLSFSDEYTSILESGMDVAIRSGR-LNDSNLIARRLCPIDMGMFASPEYIKKFGRPQ 200

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
           S++ L++H  I +     +          +D  + E      + V++  ++     LG+G
Sbjct: 201 SVEALNQHKWIMY--RYKQSGRLLTLTMPLDGQLVEFSPTHQVTVDNGYAMASLASLGAG 258

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IAL+P Y+ +D      L+ + E   T    VY  YP       K+K F ++I  K 
Sbjct: 259 IALMPQYLARDLVQQGKLMLVSEPQRTDGQGVYIYYPSRKFVPAKVKVFIDYIIHKL 315


>gi|254785592|ref|YP_003073021.1| LysR family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237685205|gb|ACR12469.1| transcriptional regulator, LysR family [Teredinibacter turnerae
           T7901]
          Length = 329

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 142/295 (48%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D ++    V  +GSFT A ++L LS++ IS+ IS +E + G++ F R  R +  TE G
Sbjct: 24  TLDGIKTIVAVLETGSFTAAGDRLGLSKALISKYISLMEQQYGVRFFNRTTRKIAPTEAG 83

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K +     + ++  +    + E      G L+I+T++  G+ LL   + EF+  +P++ 
Sbjct: 84  LKYYEKAQIILNEFASLVDFVSEKKDSLKGSLKISTSVTFGEFLLIDKIPEFMRTHPELH 143

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L N  ID+  +  D A+R+   I S +LI RK+        A+P YLK    P S 
Sbjct: 144 LDINLSNHKIDLLEEGVDVALRISDRI-SPNLIARKITEFPFCLCASPTYLKAYGTPQST 202

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I   +        F     +DR I  P  S + VNS  +I    + G GIAL
Sbjct: 203 AELQDHKCIVDSNFRITNEWPFQTADALDRTIAVP--SAISVNSPRAIRDLAINGVGIAL 260

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP ++V  +     L  I+E+  T SF+++   P       K++ F  F+  + +
Sbjct: 261 LPKFVVYKDIEAGILTEILENQSTLSFSLHALIPHREYIPNKVRYFIEFLSEQFK 315


>gi|313202348|ref|YP_004041006.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441664|gb|ADQ85770.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 301

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 144/296 (48%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + +F  VA+  SF+ AA +L +S+S++S+ ++ LET +G +L  R  R L+LT
Sbjct: 1   MH-DLNLMAIFAHVAQEQSFSTAARKLGMSRSAVSKAVAKLETALGARLLNRSTRHLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+ +    + +  + E     ++  + KPSG LR+A ++  G   +   + +FL  YP
Sbjct: 60  EVGAGMLEHCARIVTESERASQVVENLNSKPSGTLRVAASVAFGTLHVAPAMADFLQQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ + + ++ ID+  +  D  I++ +    S+L+ RKL  +       P Y +    P
Sbjct: 120 EVELDITITDRAIDMVEEGYDVIIKVAQE-PPSALVARKLAPVRRQVCGTPAYFRQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S   L  HN + +     K    F+     D  I  P    +++N   ++ Q  + G G
Sbjct: 179 ASPMALTAHNCLDYIHSGDKGYWRFS---GPDGEIAVPVSGRVRINDDEALSQVVLGGFG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +ALLP +IV     + +L  ++ D I     VY  Y        K + F +F+  +
Sbjct: 236 LALLPTFIVGNHLQSGHLQSVLSDYIPVEQHVYAMYLPNRFLPLKARTFIDFLLER 291


>gi|240949166|ref|ZP_04753513.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           NM305]
 gi|240296469|gb|EER47105.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           NM305]
          Length = 299

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 145/300 (48%), Gaps = 11/300 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+QL +S +  S+ ++ LE  + ++L +R  R +T TE
Sbjct: 1   MDKLNAISLFCKVIETQSFTQAAQQLDISLAMASKLVAQLEEHLNVRLLHRTTRKITPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+     +   S   +GKL  +  +D G   +  +L +FL  YP 
Sbjct: 61  AGLLYYQRCQPILNELKEADDSINNISENLTGKLSFSLPMDFGSRFVAPHLGKFLEAYPY 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L  +++ +D+  +  D  +R+ + ++ SS++ +K+   H    A+P YL     P 
Sbjct: 121 IELHLEFNDRRVDVVSEGFDLVLRVGR-LEDSSIVAKKIAESHQIIVASPEYLAIHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +IQ+LD+H  + + +       DF++     R   + RI     N+  S++Q      GI
Sbjct: 180 TIQDLDQHTCLLYEN---HQTWDFSFGEETLRYKAKGRIY---SNNGYSLVQMAKDHQGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +P  +V     N  L+ I+E +      +   YP     + K+K F +F+    ++ K
Sbjct: 234 INIPKCLVTKELKNGELIPILEHLDQRKLDISLLYPNRRYLSPKVKVFIDFLATLMKEQK 293


>gi|83944006|ref|ZP_00956463.1| Putative transcriptional regulator, LysR family protein
           [Sulfitobacter sp. EE-36]
 gi|83845253|gb|EAP83133.1| Putative transcriptional regulator, LysR family protein
           [Sulfitobacter sp. EE-36]
          Length = 289

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 13/297 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA + SFT AA  L +S + +SRQ+  LE  +  KLFYR  R +T+TE 
Sbjct: 2   LSWEGVSEFVAVAEAQSFTAAANSLGISTAQVSRQVGALEARLDTKLFYRTTRKVTITET 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    +V   L   +  + +    P G+L +   +  G+N +   + +F+  YPD+
Sbjct: 62  GQVYYNHCRQVLDGLAEAERAITDLHQSPKGRLNLTAPVTYGENRIAPLVNDFVRRYPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  AAP YL     P +
Sbjct: 122 EVNLRLTNQLLDLVAESYDLAIRLGE-LEDSSMMAKRLASRRHYTCAAPEYLSAHGTPHT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + ELD +N +              W           R+   L+ NS  S++   +   GI
Sbjct: 181 LSELDGYNCL--------QGTLGYWRFQEKGTTRHIRVKGNLRCNSGASLVDAALKNLGI 232

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             LPDY V+       LV +++    P   ++  YP+    + K++   + +    R
Sbjct: 233 IQLPDYYVEAELRAGRLVSVLDTYRAPDDGIWAIYPQNRHLSPKVRLLLDHLAKGLR 289


>gi|307129507|ref|YP_003881523.1| hypothetical protein Dda3937_01192 [Dickeya dadantii 3937]
 gi|306527036|gb|ADM96966.1| Hypothetical transcriptional regulator yafC [Dickeya dadantii 3937]
          Length = 295

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L +F  V  SGSF+ AAEQL L+ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKATSEELAIFVSVVESGSFSRAAEQLGLANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++  ++   + EL E+   P G LRI     +  +LL   +K F   YP
Sbjct: 61  EEGERYFRRVQQILQEMAAAETELMETRRTPRGLLRIDAATPVVLHLLMPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EVTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIVASPDYVAKHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + EL +H  + F + +         +A  D  + E  +  L  NS  ++ Q  + G+G
Sbjct: 180 QHVDELARHLCLGFTEPVSLNTWP---VARADGQLYEIAVG-LSSNSGETLKQLSLTGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY++        LV ++ D   P +      Y      + +++AF +F+  + +
Sbjct: 236 IACLSDYMIDGEIARGELVELLADQRLPVAMPFSAVYYSDRAVSTRIRAFIDFLSEQVQ 294


>gi|260599814|ref|YP_003212385.1| HTH-type transcriptional regulator YhjC [Cronobacter turicensis
           z3032]
 gi|260218991|emb|CBA34346.1| Uncharacterized HTH-type transcriptional regulator yhjC
           [Cronobacter turicensis z3032]
          Length = 299

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA   SFT AAE L L + S+SRQ+  LE+ +G +L +R  R + LT+
Sbjct: 1   MDKIHAMRLFVRVAELESFTRAAETLSLPKGSVSRQVQALESALGTRLLHRTTRRVHLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+             SG+LR+   + + Q+++   L EFL  YP 
Sbjct: 61  DGQVYYERARDLLANLDELDGLFLHDPASISGRLRVDMPVAVAQSVVIPRLPEFLHHYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L   ++ +D+  +  DC +R+ + ++ S L+ R L  +     A+P YL     P 
Sbjct: 121 IALELGSSDRLVDVVREGFDCVVRVGQ-LKDSGLVARPLGKLSQVNCASPDYLARFGCPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H L+ +   +      F  +   +     P    L VNS  +    C  G GI
Sbjct: 180 TLDDLASHALVHYTPTLGTRPAGFE-IGRENGSEWIPTGGVLTVNSTETYQAACFAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++   +  LV ++         V   YP     + ++  F  ++
Sbjct: 239 IQVPRIGVREALRSGKLVEVLPQYRAAPMPVSLIYPHRRHLSRRVHLFMEWL 290


>gi|149187248|ref|ZP_01865546.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148838784|gb|EDL55723.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 300

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 132/291 (45%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L++F  +A + + + A ++L LS +  S  IS LE+ +G++L +R  R ++LTE+
Sbjct: 1   MNVEHLKLFVRLAATHNISQAGQELGLSPAVASSYISKLESALGVRLVHRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        EV   +E  +  +   +  PSG LR++     G+  L   ++ F+  +P +
Sbjct: 61  GVAFLPHAEEVLESIEIARASVGAGNRLPSGVLRVSAPASFGRMHLIPAMQAFMDAHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I   L +  ID+     D AIR    ++ S+L+ RKL +      A+P YL    +P  
Sbjct: 121 KIDCRLSDSIIDLVEGGFDVAIR-NAALKDSTLVARKLTSDTRIVCASPSYLIKHGKPTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +HN +          E      T D P+        + ++  ++   C  G GI 
Sbjct: 180 PTDLLEHNFVCLTGFENWTFE------TPDGPVSVKPKGEFKADNGEAVRDACAHGLGIT 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNF 289
           +   +      +   L+ I+ED        ++  YP +     K++AF +F
Sbjct: 234 VSSAWCCYEYLERGELIPILEDYPLISETAIWAVYPSSRLLAPKVRAFIDF 284


>gi|152997501|ref|YP_001342336.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150838425|gb|ABR72401.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 298

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 138/301 (45%), Gaps = 7/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SF  A++ L +S+  ++R I+ +E E+G KL  R+ R +++T 
Sbjct: 1   MDKLQAMKVFCRVYEAESFKLASDSLGISRPMVTRYINSIEEELGTKLLQRNTRNISITH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K ++    +   +E  + E+ + + KP G L+I+  +D G + +   L  F  LYP 
Sbjct: 61  AGRKYYQHCIAILDAIEEAENEIGDLTQKPKGLLKISVPMDFGLSHIVPLLDNFSRLYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   +K +D++    D AIR    +     + R L        A+P Y+    E  
Sbjct: 121 IELDVDFSDKRVDMTESGVDIAIR-GGDLGGDQFVARPLCYSKGFVCASPDYILKYGELD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I++L  H+ + + + +    + ++                   N+  ++ ++ + G GI
Sbjct: 180 HIEDLKNHSCLLYSNAL--VPKRWSLTDENGVSQTVSVSGAFTANNGGALTRFALAGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              PD+++    ++  LV ++ +      + Y  YP+    + K +   +F+  +  + K
Sbjct: 238 IYQPDFLIAKYIESGELVNLLPNYKGYEISFYAIYPQRKLMSRKTRLLLDFLQEELANTK 297

Query: 299 F 299
           F
Sbjct: 298 F 298


>gi|238750486|ref|ZP_04611987.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           rohdei ATCC 43380]
 gi|238711417|gb|EEQ03634.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           rohdei ATCC 43380]
          Length = 300

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 149/298 (50%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V   GSF+ AAEQL  + S +SR +  LE+++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRAVKKLESKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +   +   + EL +S + P G LRI  +  +  +++   + EF   YP
Sbjct: 61  QEGEHYFRRVQNILRDMAAAENELLDSQLNPKGLLRIDASTPVLLHIIAPLMVEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  RKL+T + H  A+P YLK    P
Sbjct: 121 LVALSLVSSETFINLIERKVDIAIRVG-TLQDSTLRARKLMTSYRHILASPAYLKQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H  + F DL          LA  D  + E   S L  N+  +  + C+ G+G
Sbjct: 180 QTVADLQHHICLGFNDLPVLNRWP---LAGSDGQLYEI-TSDLTSNNGETQRRLCLEGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++++ +    +L+ ++E+ I P +  +   Y      + +L+ F +FI  + 
Sbjct: 236 IACLSDFMIQQDLQRGDLIPLLEEHILPVAMPINAVYYSDQAISNRLRCFIDFINERL 293


>gi|90409972|ref|ZP_01217989.1| hypothetical transcription regulator protein [Photobacterium
           profundum 3TCK]
 gi|90329325|gb|EAS45582.1| hypothetical transcription regulator protein [Photobacterium
           profundum 3TCK]
          Length = 294

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 146/296 (49%), Gaps = 13/296 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++KL  F  V  +GS + A++   +  SSISRQ++ LE+E+GI+L  R  R + LTE G
Sbjct: 3   TFNKLHYFNCVVETGSISKASKVFDVQPSSISRQLASLESELGIRLLERTTRNVGLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +  +  +  +LE  +  + +  + P G L+I+TT+  G++ +   L +F   YPDI+
Sbjct: 63  KTYYDYSKRIISELEEAKRAVGDLQLSPIGNLKISTTVGFGESRILPLLPKFRKAYPDIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ L  + +D+  +  D AIR  + +  SSLI RKLV  H    ++P Y+     P S 
Sbjct: 123 IEVELTERIVDLIEENVDIAIRSGR-LPDSSLIARKLVDNHFLLCSSPEYMDENGLPDSP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ + +G          +W    +          + V+S     Q  + G GIAL
Sbjct: 182 EQLINHDCVVYG-----YHGWKDWYLVKNNFQKLAIKHYMTVDSVNGQKQLILHGGGIAL 236

Query: 244 LPDYIVK---DNPNLVRIMEDVITPS----FTVYFCYPEALKNTGKLKAFRNFIFL 292
           +P + VK   D+  L++++ +          + Y  Y      + K++ F +F+  
Sbjct: 237 IPYWAVKDELDSGRLIQVLPEHQFSPCLHLSSTYAIYQNRNLVSSKMRVFLDFLRE 292


>gi|325127538|gb|EGC50463.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis N1568]
          Length = 299

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVVASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEELAGHQCLGFTE--PGSLNTWAVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++V ++     L+ ++ +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEEL 293


>gi|218516900|ref|ZP_03513740.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 307

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 139/296 (46%), Gaps = 8/296 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D    +  F   A   S+  AA    +S S+I + ++ LE+ +G++LF R  R ++L
Sbjct: 1   MAVDSLASIVAFVHAAEQQSYVAAARLAGVSPSAIGKAVARLESRLGVRLFNRTTRSISL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE+G+ L+     V   +   +  + +   +P G+LR++    +G +LL   L  F   +
Sbjct: 61  TEEGTVLYEHYKRVLDDMRDAEAAVSKGRDRPRGRLRVSVPHIVGHHLLMPILPGFTARF 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I++ +  +++ ID+  +  D  +R  + +  + LI R L   H    A+P YL     
Sbjct: 121 PEIELDIDFEDRVIDLITEGLDVVVRSGE-LADARLIARPLGEQHFVVCASPAYLDRHGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H  I F          + +    +R +       L  N+  + ++    G 
Sbjct: 180 PETPDDLSRHACIHFKYPSTGRTAPWAFRPPSERLLLP---RSLTFNNTDAGLRAARDGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+A LP Y+ + +     L+ ++ D + P  ++   +P   + + K++AF +F+  
Sbjct: 237 GLAHLPVYVAEPHIRAGTLIPVLTDSMAPFGSLSLVWPSNRQLSPKIRAFVDFVVE 292


>gi|94309688|ref|YP_582898.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353540|gb|ABF07629.1| transcriptional regulator, LysR-family [Cupriavidus metallidurans
           CH34]
          Length = 310

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 125/296 (42%), Gaps = 17/296 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD   + VF   A  G+ + AA  L LS S+ S ++  LE  +G +L +R  R L+LT
Sbjct: 1   MPFDLTDIAVFVRAAALGNLSAAARDLGLSTSTASARLQRLEDRLGTRLLHRTTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +       +    E     +   +  P G LR+      G+  +   +  FL  YP
Sbjct: 61  GDGERFLTHAEPLLAASEVAAQSVGRGAEVPHGPLRVTAPASFGRQHVSPAIPAFLATYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + L L ++ + +     D A+R+   +  SSL+ R L   H    A+P YL     P
Sbjct: 121 GITLDLRLSDQIVGLVDSGIDVALRMGA-LPDSSLVARPLAPSHRVICASPEYLARHGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
              ++L  HN +  GD               D P+GE  +S    L+ ++   I    V 
Sbjct: 180 RHPEDLRNHNCLVLGDQSTW---------RFDTPVGESAVSVRGTLRADNGEVIRDAIVA 230

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G GIAL   + V        LV ++++  + P  +++  YP       K  AF +F
Sbjct: 231 GVGIALKSTWDVAPYLRRGELVTVLDEYPVLPVVSIWAVYPSRHLVPAKTHAFVDF 286


>gi|317050029|ref|YP_004117677.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951646|gb|ADU71121.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 299

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  GSFT AAE L L + S+SRQ+  LE ++G +L +R  R + LT+
Sbjct: 1   MDKIHAMQVFVRVAEMGSFTRAAESLGLPKGSVSRQLQALENQMGTRLLHRTTRRVHLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+      Q      SGKLR+  ++ +    +   L EFL  YP 
Sbjct: 61  DGLVYYDRCLDLLSMLDDMDSLFQHDPATLSGKLRVDMSVAMATGFILPRLPEFLQHYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+L   ++ +D+  +  DC IR+ + ++ S LI RK+ T  +   A+P YL     P+
Sbjct: 121 IEIELSSSDRQVDVIREGFDCVIRVGE-LKDSGLIARKIGTHALINCASPDYLSRFGRPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L +H ++ +   + +    F +         +     + VNS  +    C+ G GI
Sbjct: 180 RLEDLSQHAMVHYTQQLGQPSSGFEYFDGKQTHYIQTG-GVVTVNSTETYRAACIAGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V+   ++  LV ++         +   YP       +++ F  ++    +++
Sbjct: 239 IQVPAIGVQPLLESGQLVEVLHHFPAKPMPISLLYPHRRNVARRVRVFMEWLSQVLQEY 297


>gi|167583998|ref|ZP_02376386.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 296

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 141/296 (47%), Gaps = 10/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELGDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEAALGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   L   + EFL  +P +
Sbjct: 61  GHEFYERAQRILAEVADAEQAMVARSTELHGSLKISAPLSFGITHLSPLIAEFLAAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D A+R+  P++ S+LI R L    M A  +P YL+    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDVALRIG-PLEDSTLIARPLGQSRMIACCSPAYLRRRGAPAA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L +H  + +G           W   VD       +   L  N+   +    + G GI
Sbjct: 180 PADLGEHVCLLYGRE-----RRVGWEFRVDGAARTFDVQGPLVANNGEVVRDAAIAGLGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP +IV    D+  LV +++    P+  +   +P+  +    L+ F  F+  + 
Sbjct: 235 ALLPHFIVGAALDSGALVPVLDGYAPPALQLNAIFPQHREGFVTLRTFVAFLAERL 290


>gi|262191955|ref|ZP_06050122.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93]
 gi|262032189|gb|EEY50760.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93]
          Length = 299

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN + +        +       V              ++  ++ +  + G GIA +P
Sbjct: 183 LARHNCLQYAYQTTGATDWE--FKGVKGNYIVKVSGTFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV +  + +     +Y  YP   +   K++     I  +
Sbjct: 241 RCLVYHDFRNGELVDVFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRAR 291


>gi|322514465|ref|ZP_08067505.1| LysR family transcriptional regulator [Actinobacillus ureae ATCC
           25976]
 gi|322119628|gb|EFX91696.1| LysR family transcriptional regulator [Actinobacillus ureae ATCC
           25976]
          Length = 298

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 137/293 (46%), Gaps = 13/293 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L YR  R +T TE
Sbjct: 1   MDKLNAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLYRTTRKITPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+
Sbjct: 61  AGLFYYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFIATYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P 
Sbjct: 121 IQLNIEFSDRRVDVVAEGYDLVLRIGS-LEDSSIVAKRIAQSELILLASPEYLDKHGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++L +H+ + + +          WL    D+ I       +  N+  +++Q    G G
Sbjct: 180 ILEQLAQHSCLLYEN-------HQQWLFVDNDQKIKFKPTPHILSNNGYALLQMAKAGQG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP ++ KD+    NLV ++      S  +   YP     + K+K    F+
Sbjct: 233 IVNLPLFLAKDDLTAGNLVEVLPQYKQNSIDISILYPHRRYLSPKVKVLIEFL 285


>gi|107027592|ref|YP_625103.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693696|ref|YP_839229.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896966|gb|ABF80130.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651696|gb|ABK12336.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 359

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 53  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 112

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LR+ +T   G+ ++   L++F   YPDI + L+L
Sbjct: 113 CRPGIEHLAQALEDMRELRSGPPSGHLRVGSTPGFGRKVIAPLLRDFHAQYPDITLDLLL 172

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++  D S D  D A R  + ++ S+++ R+L+ + M   A+P Y      P  + EL +
Sbjct: 173 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAHRHGLPRHVDELAR 231

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I       +  E   W   +D    + +++     N    +++  + G GIA LP Y
Sbjct: 232 HRCINLCTASGRVTE---WEFRIDGVTQQRQLAAHHTFNDIDLVVRAALDGLGIAQLPAY 288

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V D   +  LV  +          Y CY        +++ F +++  + R
Sbjct: 289 QVCDLLADGRLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTR 339


>gi|78060944|ref|YP_370852.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968829|gb|ABB10208.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 353

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 44  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 103

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LRI +T   G+ ++   L++F   YPDI ++L+L
Sbjct: 104 CRPGIEHLAQALDDMRELRSGPPSGHLRIGSTPGFGRKIIAPLLRDFHAQYPDITLELLL 163

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++  D S D  D   R  + ++ S+++ R+L+ + M   A+P Y+     P  + EL +
Sbjct: 164 NDRPADFSADRIDVEFRDGR-MEDSAIVARQLIPMQMIVCASPSYVHRHGLPRHVDELAQ 222

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I       +  E   W   VD    + +++     N    +++  + G GIA LP Y
Sbjct: 223 HRCINLRTASGRVTE---WEFKVDGLTQQRQLAAHHTFNDMDLVVRAALDGLGIAQLPAY 279

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V D   +  LV  +          Y CY        +++ F +++  + R
Sbjct: 280 QVCDLLADGQLVSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTR 330


>gi|115358083|ref|YP_775221.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283371|gb|ABI88887.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 307

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 134/298 (44%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W +L++F + A  GS + AAEQL +S ++ SR +S LE  +G +L  R  R + LT+
Sbjct: 1   MDRWTQLQLFVLTADLGSLSKAAEQLDMSNAAASRTLSSLEERLGARLIERTTRRMWLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + HR  + V  +L        E  V P G LR+ +++      L   L EFL  YP+
Sbjct: 61  AGREYHRRCTAVIAELAEADAIASEEVVNPRGVLRVTSSVSFAMMHLAPALPEFLKRYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +Q+   N+  +      D AIR ++    S +  R+L        A+P YL     P 
Sbjct: 121 LTVQITATNQYQNFIESGIDIAIRTKEHEGDSCITIRRLAETRRVLAASPAYLATHGRPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +HN++ +   +   +     L            S L  N    I+     G GI
Sbjct: 181 KPEDLAQHNMLVYNLAVDPYLLH---LRRGKEERNIAIASALDSNEGQVIVAAGRAGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            + P YI+ D+     LV ++ED   P  T+   Y        K++ F +F+  + ++
Sbjct: 238 VVQPLYIIHDDIVSGRLVPVLEDWQLPRLTINLAYQSRRYQPAKIRVFTDFLIERVKN 295


>gi|161526297|ref|YP_001581309.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348989|ref|YP_001944617.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160343726|gb|ABX16812.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189333011|dbj|BAG42081.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 349

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTEQFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLAEHPSLSLPT---EYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGGDIARGALVRLLPDFKLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|317402486|gb|EFV83054.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 313

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 136/295 (46%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ AA  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLYYFSQVVEQGGFSAAARALDIPKSRLSRRISHLEESLGVRLLQRTTRRLRLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+          +++   +P+G + ++  + + Q++L   L EFL  +P I 
Sbjct: 63  ERYLHYCREMAASARAADDAMRQLQSEPTGPVVVSCPVSIAQDVLAPLLPEFLDAWPAIS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++ N+ +D+  +  D A+R+R  +   + L+ R L T      A+P YL+    P +
Sbjct: 123 VQLLVTNRRVDLIREGVDLALRVRTKLDTDAELVVRHLGTARGTLVASPGYLQRHGAPDT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H  ++F D  P+    +         +       L  N ++ +++  V G GIA
Sbjct: 183 PQDLASHTTLSFSD--PQNEVRWPLRNDKGEEVHIELKPQLSCNDFIVLVEAAVRGRGIA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP    ++      LV ++    +P   V+  YP        ++   +F+  + 
Sbjct: 241 LLPSIATQEELRRGQLVPVLPQWQSPEGIVHCIYPSRRGMMPAVRTLLDFLSQRL 295


>gi|315182133|gb|ADT89046.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 308

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 135/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  VA   SF+ AAE+L L ++S+S  I  LET+ G +L  R  R ++LT 
Sbjct: 1   MDRLTAMHTFVRVAELASFSRAAEELGLPKASVSNHIQLLETQAGARLLQRTTRKVSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++  + E       ++  + SG++R+     + + ++  +L EFL  +P 
Sbjct: 61  DGRTYYERCLDLLAEFEELDTLFVQTEQQLSGRIRVDMPTGMAKGVVVPHLAEFLQQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L   ++ +D+  +  D  +R  + +  S+LI RK+  + +  YA+P YL    EP 
Sbjct: 121 VQLELSSTDRRVDVVREGFDFVVRAGQ-LSDSALIARKVCDMAVRTYASPDYLARHGEPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H L+ +   +    + + +    +R         L VN+  S    C+ G G+
Sbjct: 180 TPDDLSHHQLVHYAQNLGGQPDGWEYWDG-ERLHTIDMAGALTVNNAESYTAACLAGIGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P+  V+    +  LV ++ +       VY  YP       +++   +++  
Sbjct: 239 IQTPESGVRKLVASGQLVEVLANFTCQPLPVYLLYPHRRHLAKRVRVLMDWMTA 292


>gi|239833522|ref|ZP_04681850.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239821585|gb|EEQ93154.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 309

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 127/294 (43%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LT
Sbjct: 1   MMSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 61  EAGQGYHERVLAILSNIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     A+P Y+     P
Sbjct: 121 DLTVNMQLTDEMVDIVGDGYDLAIRIAE-LSDSTLVARRLAPVRRILVASPGYIAERGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI    +  LQ NS   + +  + G G
Sbjct: 180 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPVGPLQTNSSEMVREAVLAGLG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + +        LV+++ D        ++  YP       K++ F +++
Sbjct: 234 IAQRSTWDIGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|254486690|ref|ZP_05099895.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214043559|gb|EEB84197.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 301

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 135/286 (47%), Gaps = 7/286 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V ++ SF  AA  L ++ S++S+Q+  LE ++ +KL  R  R +++TE+G+  +  
Sbjct: 9   VFIAVVKAQSFAGAARSLGITSSAVSKQVQNLEQDLQVKLLNRTTRNVSVTEEGAVYYEG 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +     L+  Q ++ E   +P G L+I+  + LG       +  F   YP++ + + LD
Sbjct: 69  AARALEDLQEAQEQIYELKSRPRGPLKISFPLSLGNKYFGQAIASFAAQYPEVDLDVSLD 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +DI  +  D A+R+   ++ +SL+ R++ +      A+  YL+    P +  +L  H
Sbjct: 129 ERFVDIVNEGFDLAVRIGS-LKDTSLVARRMASCPFVICASAGYLETHGTPQTPGDLADH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N++ F       + ++ +     +          + +S   +    + G GIA+LP + V
Sbjct: 188 NVLAFTGN--SGLHEWRYQDATGQIGQVSLRGNFKADSGEILCSAALQGVGIAILPVFYV 245

Query: 250 KDNP---NLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +     L  ++ D +T P   +Y  +      + +L+ F + + 
Sbjct: 246 AKHLKTRKLQAVLPDYVTSPKRDIYAVFQPNRFQSTRLRLFVDHLV 291


>gi|221640399|ref|YP_002526661.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|221161180|gb|ACM02160.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
          Length = 301

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 140/295 (47%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F +V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFAMVVDQGGFTDAARKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V          +      PSG LR++   D G  LL   L EFLL YPD
Sbjct: 61  IGLAYYDRARRVLTDAGEADALVTSMQTAPSGHLRLSVATDFGVALLTPILAEFLLDYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D AIR+   ++ SSL  RKL        A+P YL+    P+
Sbjct: 121 ITVTMVLNNRSVELISEGFDMAIRVGD-LEDSSLRARKLTETTRRMIASPGYLQRHGRPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L  H L+         +  +  L+    P        L VN   S+++  V G GI
Sbjct: 180 KIDDLTDHRLLYHSTQAHGNV--WRLLSPSGEPRQVRAPGFLTVNDGQSLLKAAVSGLGI 237

Query: 242 ALLPDYIVKDNPN--LV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP+++  +     LV  ++ D+   +  ++  YP       K++AF +F+  +
Sbjct: 238 AHLPEFLFAEAMRAGLVEEVLPDLPVETLGIHAIYPAGRFTQPKVRAFIDFLVRR 292


>gi|165976115|ref|YP_001651708.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876216|gb|ABY69264.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 298

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 136/292 (46%), Gaps = 11/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE
Sbjct: 1   MDKLNAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+
Sbjct: 61  AGLLYYQRCLPILNELKDAEDSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P 
Sbjct: 121 IQLNIEFSDRRVDVVAEGYDLVLRIG-TLEDSSIVAKRIARSELVLIASPDYLAKQGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++++L +H  + + +       D       D+ +     + +  N+  +++Q    G GI
Sbjct: 180 NLEQLTEHTCLIYENHQQWQFTD------GDQKVKIKPNAHVISNNGYALLQMTKAGQGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++ K++     L+ I+      S  +   YP     + K+K    F+
Sbjct: 234 VNLPLFLAKEDINAGRLIEILPQYKQHSIDISVLYPHRRYLSPKVKVLIEFL 285


>gi|153010332|ref|YP_001371546.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562220|gb|ABS15717.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 309

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 127/294 (43%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LT
Sbjct: 1   MMSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 61  EAGQGYHERVLAILSNIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     A+P Y+     P
Sbjct: 121 DLTVNMQLTDEMVDIVGDGYDLAIRIAE-LSDSTLVARRLAPVRRILVASPGYIAERGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI    +  LQ NS   + +  + G G
Sbjct: 180 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPVGPLQTNSSEMVREAVLAGLG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + +        LV+++ D        ++  YP       K++ F +++
Sbjct: 234 IAQRSTWDIGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|254242328|ref|ZP_04935650.1| hypothetical protein PA2G_03069 [Pseudomonas aeruginosa 2192]
 gi|296387866|ref|ZP_06877341.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313109034|ref|ZP_07795007.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|126195706|gb|EAZ59769.1| hypothetical protein PA2G_03069 [Pseudomonas aeruginosa 2192]
 gi|310881509|gb|EFQ40103.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 302

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA +G FT AAE++ +S S ISRQ++ LE  +  +L YR  R ++L+E G 
Sbjct: 4   WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     + + S +P G LR+   +  G+  +   +  F+  YP +++
Sbjct: 64  TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  S L+  +L    M+  A P YL+    P S  
Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRLMYLCATPEYLRRHGTPQSPT 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL + N +     +   +ED        R          + NS  +++   + G G+  L
Sbjct: 183 ELGQFNCLIGSSDLWSFLED-------GRETQHRVQGNWRCNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V ++     LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 236 PDYYVIEHLRSGRLVSLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYLKE 286


>gi|134291978|ref|YP_001115747.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135167|gb|ABO59492.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 297

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 10/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GHEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLRAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YL+    P S
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRIGA-LEDSTLIARPLGAWKMIACASPAYLERQGTPAS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             EL  H  + +G           W   VD       +   L  N+   +      G GI
Sbjct: 180 PAELAGHTCLMYGRE-----RRVGWEFRVDGVARTFDVQGPLVANNGEVVRDAATAGLGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP++IV    D   LV +++       T+   +P+  +    L+ F  F+  + 
Sbjct: 235 ALLPEFIVGAALDGGALVPVLDAYAPAPLTLNAVFPQHREGFVTLRTFIGFLAERL 290


>gi|119899911|ref|YP_935124.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119672324|emb|CAL96238.1| probable transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 302

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD L  F  VA  GSF  AAE+L +S S +SRQ++ LE  +  +LFYR  R ++LTE G 
Sbjct: 11  WDGLEAFVAVADCGSFGGAAERLGVSTSHVSRQVARLEERLQARLFYRSTRRVSLTETGQ 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     +Q+    P G LR+   +  G+  +   + +F+  YP++++
Sbjct: 71  VFLQHCRRLQDGFDEALHAVQDLGGAPKGLLRMTCAVTYGERFIVPLVNDFIERYPELRV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L N  +DI  +  D AIRL + +  SSL+  ++    M+  AAP YL     P ++ 
Sbjct: 131 EIELTNAMLDIVREGYDLAIRLGR-LTDSSLVATRIAPRVMYLCAAPSYLARRGTPQTLA 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ +           D        R          + NS  +++   + G G+A L
Sbjct: 190 ELAGHDCLL-------GSADTWVFQDQGREHFLRVQGNWRCNSGEAVLDAALRGFGLAQL 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V ++     L  ++     P   V+  +P+    + K++     +
Sbjct: 243 PDYYVLEHLREGRLRALLTAYQPPHTAVWALFPQQRYLSPKVRMMVEHL 291


>gi|291085350|ref|ZP_06352831.2| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291070710|gb|EFE08819.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 305

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 143/294 (48%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +F  V   G F  AAE LHL + ++++ I  LE ++G KL  R  R ++LT++G 
Sbjct: 2   FEYMNIFVQVVEQGGFARAAEVLHLHRPAVTKAIQHLEDDLGAKLLNRTTRKVSLTDEGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++ T  +   ++         +  P GKLR+   + L  ++L   LK+F   YPDI++
Sbjct: 62  AFYQRTKVLLADVDDIMASF-SPTRPPRGKLRVNAPLSLAHSVLVPALKDFQSRYPDIEM 120

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+  +  DC IR+ + +Q SSLI R+L  + M   A+P YL+    P + +
Sbjct: 121 ILTSTDRRIDLLAEGIDCMIRIGE-LQDSSLISRRLGAVKMVTCASPDYLQQHGIPQTPE 179

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI-- 241
           +L +H  + F     +  E   W   + D  +       + V++   ++  C+ G GI  
Sbjct: 180 DLSRHQAVNF--FSERHREALEWSFVSADETVSFTPAGRISVDNSDILLTGCLAGLGIIR 237

Query: 242 ---ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              A+L  Y+   +  LV ++ +    S  V   YP+      +++ F +++  
Sbjct: 238 GVHAVLAPYL--QSGQLVEVLANYAGESKPVSVLYPDRRHLAPRVRVFIDWLCE 289


>gi|307729423|ref|YP_003906647.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583958|gb|ADN57356.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 305

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 126/293 (43%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D      VF  V   G F  AA+ L  S ++++R ++ LE  +G +L  R +R L+LTE
Sbjct: 1   MDRLRAFEVFVTVVARGGFARAADVLGTSPANVTRYVNELEAHLGTRLLNRTSRTLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   +  T+  +  +SV+P G+LRI   +  G   L      F+  YP 
Sbjct: 61  GGETLYARCKSILDDVAETEGLVSSASVEPRGRLRINVPVSFGILHLAPLWPAFMQKYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L ++ +DI  +  D AIR+ +   S++   RKL T      A+P YL     P 
Sbjct: 121 IELDVGLIDRVVDIVDEGYDIAIRISRAG-STNHAARKLATSQNVLCASPAYLARYGAPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I +           N       P+       +  N+  +     + G G+
Sbjct: 180 TPADLLAHRCIGYTYAATGDEWQINDRRGKVHPVKVD--CQMHTNNGDTARAAALAGQGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              P +++  +     LVR++ D   P   +   YP     + +++   +F+ 
Sbjct: 238 IWQPTFLIGGDLRAGTLVRVLPDYRLPEIDILALYPSRRHVSARVRVMIDFLV 290


>gi|163758928|ref|ZP_02166015.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162284218|gb|EDQ34502.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 299

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE ++G  L  R  R  +LTE
Sbjct: 1   MDTLTRIRAFIDVVEAEGFSAAARKVGRSKALLSKYVRELEDDLGALLLNRTTRQFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  S++  +++     ++E S    GK+RI+         +  +L +F   +PD
Sbjct: 61  AGHTYYRSASDILKEIDNLADLVREGSKDLKGKIRISAPRTFVDAAVGQSLIDFAAAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++I D++ +D+  +  D AIR+ + ++ S LI RKL T  + A A+P +L+      
Sbjct: 121 VTLEIISDDRFVDLVEEGYDLAIRITR-LEDSGLIARKLSTFSLIACASPEFLEKTGPIT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     I   D   + + ++ +                +VNS L+ M+    G G+
Sbjct: 180 HPSQLADVPCII--DTNGRFLNNWRFDNPDGSSASVTVSGSFEVNSPLAAMRAAEAGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPD++ ++      L  I+ + +     +Y  YP       K++AF +F+
Sbjct: 238 TILPDFVFREREKTGTLKPILTEFLPTDRGIYAIYPHRRYLPAKVRAFVDFL 289


>gi|167586820|ref|ZP_02379208.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 300

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFVAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        V + ++  +  +    VK SG LRI+     G+  +   + EF   +PD
Sbjct: 61  EGSAFLEDCQRVINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ EL +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G
Sbjct: 180 TLAELARHNCLA---LAANANQQRGWSFLEDGKVVSIRVSGTMECSDGAVLHEWCLAGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V D+     LV +++    P   ++  +P+      +++ F +++
Sbjct: 237 LAWRSWWEVGDDVAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDYL 289


>gi|293394639|ref|ZP_06638931.1| LysR family substrate-binding transcriptional regulator [Serratia
           odorifera DSM 4582]
 gi|291422765|gb|EFE96002.1| LysR family substrate-binding transcriptional regulator [Serratia
           odorifera DSM 4582]
          Length = 306

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 137/289 (47%), Gaps = 4/289 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F ++   GSF+ AAE   ++ S IS++I  LE  +G +L YR  R LTLTE G +
Sbjct: 9   NDLILFALIVECGSFSKAAESAGITSSVISKRIGRLEKSLGARLLYRTTRSLTLTENGQE 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+R    +  +++     + E S   +G +R++     G+ LL  ++ EF   +PD++++
Sbjct: 69  LYRHARTISSQMQEALYAVSERSEALTGTIRMSVPTISGELLLSESVAEFCTQHPDLKVE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+  +  D AIR    +  SSLI R ++        +P YL++  +P +  E
Sbjct: 129 MRLENRFVDLVNEGIDLAIRTG-TMPDSSLIARHILDSRWVIVCSPSYLEHHPQPTTTAE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN +T+               T D+         L  N+  +I +  + G GIA++P
Sbjct: 188 LLNHNCLTYTYQESGSANWLVKQPTGDQIAELQVNGNLSANNARAIRKAVIGGYGIAMVP 247

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V ++     L+ I+         VY  YP       K +     I 
Sbjct: 248 RCMVYEDLQQGKLLEILAGHCGKVLGVYAVYPYTRNLPLKTRLLIEHII 296


>gi|109897681|ref|YP_660936.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109699962|gb|ABG39882.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 301

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 11/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L++F  +AR+ + + A ++  LS +  S  IS LE  +G++L +R  R ++LTE+
Sbjct: 1   MNIEHLKLFVRIARTCNISAAGQEQDLSPAVASAYISKLEDNLGVRLVHRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+   +ET +  + +    P G LR+      G+  +   L EFL  YPD+
Sbjct: 61  GEAFLPHAEEILTNIETARASVGDGEHNPKGVLRVTAPASFGRMHIVPALDEFLARYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +    ++  +D+     D AIR    ++ S+L  RKL        A+P Y+K+   P  
Sbjct: 121 SVDFRFNDSIVDLVEGGFDIAIR-DAALKDSNLFARKLAPDRRIICASPKYIKSHGAPKI 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q++D H  +    L     E      T    +       +++++  ++    + GSG+ 
Sbjct: 180 PQDIDAHQCVNLMGLDTWDFE------TDKGSVSIKATGRIRIDNGEAVRDAAIEGSGLV 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   + V     +  LV+++ED        ++  YP   +   K++AF +F   
Sbjct: 234 MSSIWCVYQALQSGQLVQVLEDYPMVSKTAIWAVYPSNRQLAPKVRAFIDFFLA 287


>gi|312602822|ref|YP_004022667.1| LysR family transcriptional regulator [Burkholderia rhizoxinica HKI
           454]
 gi|312170136|emb|CBW77148.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 404

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  S SF+ AA+ L + ++S++  I  LE  +G++L  R  R L LT 
Sbjct: 69  MDRLQAMQVFTRVVESNSFSRAADTLDMPRASVTTIIQNLEAFLGVRLLQRTTRRLNLTP 128

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +  T+    E +  P GKLR+     +G+ ++   L EF   YP 
Sbjct: 129 DGAAYYERCVRILADIAETEQLFHEGARNPRGKLRVDMPSSIGRLVVLPRLCEFHTRYPG 188

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L +K +D+  +  D  IR+   +Q S+L+ R++        A+P YLK   EP 
Sbjct: 189 IELMVGLGDKPVDLIQEGIDAVIRVG-TLQDSTLVARRVGVFQGVTCASPEYLKRHGEPR 247

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++EL+ H  + +       +  +++L    +P+       + VN   + +   + G G+
Sbjct: 248 TLEELENHYAVNYFSSRTGRIIGWDFLVD-GKPVTVKMKGAVAVNDADAYLNCGINGFGM 306

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                ++      +  L  ++    T    +   YP     + K++ F ++I  
Sbjct: 307 IQPARFMALPYLQSGQLKEVLPQWKTQPMPISVVYPHNRHLSPKVRVFVDWIAE 360


>gi|222084977|ref|YP_002543506.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722425|gb|ACM25581.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 298

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  V  +GS + A   L  S + IS++I  LE  +G +L  R  R ++LTE G
Sbjct: 3   NLGDLEIFASVVATGSMSLAGRALGFSPAVISKRIKRLEDRLGTRLLQRTTRQISLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   LE  +  +   S +  G L+I+     G+  +  +LK F+  +PD+ 
Sbjct: 63  QGFYDRVLAILAGLEEAEAYIAGRSAQMQGTLKISAPTSFGRLHIAPHLKTFMQSHPDLA 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I LIL ++  DI     D AIR+ + +  SSL+ R+L  +     A+P Y+     P +I
Sbjct: 123 INLILTDEFTDIVGGGYDLAIRIAE-LTDSSLVARRLAPVRRLLCASPAYVATHGMPENI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +   +  P  ++      T  RP G      L  NS   I +  + G GIAL
Sbjct: 182 DDLRRHICLPAHNHDPWRLDGPKGALTF-RPEG-----MLITNSSEVIREAVIAGLGIAL 235

Query: 244 LPDYIVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
              + +     +  LV+++         T+   YP       K++ F +F+  
Sbjct: 236 RSTWDIGPELKDGRLVQVLPAYEGSHNVTLSAVYPSRQFLPAKVRVFIDFLAE 288


>gi|119945399|ref|YP_943079.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
 gi|119864003|gb|ABM03480.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
          Length = 300

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 8/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D ++L +F +V  +GSF  AA    +S  ++S++IS LE E+ ++L YR  R L+L+E G
Sbjct: 3   DVNELFLFVLVVEAGSFNKAASIAGISTPALSKKISKLEKELSVQLLYRTTRKLSLSEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L++    +  ++      +   S K SG+++++     G+ LL   + EF   +PDI 
Sbjct: 63  ETLYKHAKNINQQVNEAIGAVSNFSDKISGEIKLSVPTISGELLLAEIVAEFCQQHPDIS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L+N+  D+  +  D AIR    +++S+LI + L+  H     +P Y++    P  I
Sbjct: 123 VNIRLENEFADLVTEGLDLAIRTGN-LENSTLIAKPLIVSHWIVCCSPDYIEQHGMPKKI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
             L  HN + +     +     +W    +      RIS     N+  ++ +  + G GIA
Sbjct: 182 DALLTHNCLAY---TGQAKGSHDWRFEQNGQEQSIRISGNFATNNAQALRKAALAGYGIA 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P   V ++     L+ ++ D    S  VY  Y        K++     I
Sbjct: 239 YVPRCGVYEDLQNGKLIALLTDYKPRSLGVYAVYSYTRHLPTKIRLLIEHI 289


>gi|59713780|ref|YP_206555.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59482028|gb|AAW87667.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 311

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 138/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  VA   +FT AAE+L +S+S +S+Q+  LET +  +L  R+ R +++T
Sbjct: 5   MLDNLHEMVIFATVANELNFTRAAEKLGISKSHVSKQVKALETRLDCQLVQRNNRSVSIT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS+      ++          L     + SG  ++      G + +   L EF   +P
Sbjct: 65  ELGSQYAEYCQKLIDIAYEADALLDAHHGRISGVFKVGIAQSFGNSHIIHALAEFQAQFP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++++ L +    +  D  DC I +   +    ++ RK+        A+P Y++    P
Sbjct: 125 EIELEVSLFDHKPKLLEDGLDCWIAIHDDLP-EGMVARKIADCRFVVAASPDYIEQHGCP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               EL KH  IT+     +     +W  T D       + S  ++++  +I+     G+
Sbjct: 184 TRPAELVKHKCITYQSNERRFN---DWEFTRDGVHQVVNVQSNFKIDNASAILDATKAGA 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIA L  Y+++   DN +LVR++++        +Y  YP       K++ F +F+  + 
Sbjct: 241 GIAYLASYLLENEFDNGSLVRLLKEWQADMKLPIYAVYPRRQHLPPKVRTFIDFLSQQV 299


>gi|295676755|ref|YP_003605279.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436598|gb|ADG15768.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 355

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 141/304 (46%), Gaps = 12/304 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE G+
Sbjct: 4   LQSMRVFVKVADLGSFVGAAGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   LE  +  +   + +P G LRI   +  G + L   ++ +   YPD+  
Sbjct: 64  TYLERVRHILADLEGVEQMVVARNHEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D  I + + ++S+S++ R+L T +M   A P YL     P   +
Sbjct: 124 DVTLADRHVDLVEEGFDVGILVARQMRSASIVTRRLTTGYMTVCATPEYLAQHGTPKRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ +       +   +    +  D  +     + +  N+   + Q+ +LG G+A+L
Sbjct: 184 DLLGHSCL--SRPTDQGGGEERVFSGPDGEVRVRPTNAIAANNAEMLRQFALLGMGVAIL 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL-------KA 294
           P Y++  +     LVR+++    P   +   YP  L    K++ F + +         +A
Sbjct: 242 PSYLIGRDLAAGRLVRLLDQYSLPPIEITIAYPSRLHLPAKVRTFIDHLVEHFQPESAQA 301

Query: 295 RDWK 298
           RD +
Sbjct: 302 RDSR 305


>gi|332529642|ref|ZP_08405597.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040873|gb|EGI77244.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 304

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +G+FT AAE L L + ++++ +  LE  + +KL  R  R +T+T 
Sbjct: 1   MDQIQSIRVFARVVEAGTFTKAAESLDLPKGTVTKLVQQLEARLKVKLLNRTTRRVTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +  T+ V   L+  +  +  +  KPSG+LR+     +   +L   L +F   +PD
Sbjct: 61  DGAAYYERTTRVLKDLDDIEASMTNAQAKPSGRLRVDVGTSVAGQILIPALADFYRRFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L + ++ +D+  D  DC IR    +Q  SL+ R+L  + + A A+P Y+K    P 
Sbjct: 121 IQLDLGVTDRPVDLITDNVDCVIR-GGDLQEQSLVARRLGNVPLVAVASPAYIKARGLPR 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              EL++ H  + F           +      + +       L VN   ++    + G G
Sbjct: 180 HPSELEREHTTVNFFS-ARTGRPYMHEYMQDGKTLEVAGHYQLSVNESNALTSAVLAGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           ++ +P +  +    +  LVR++ED   P   +Y  YP     + K++AF  +
Sbjct: 239 VSHIPTFTAEPLIASGQLVRVLEDWTCPVIPLYVVYPPNRHLSAKVRAFVEW 290


>gi|311108411|ref|YP_003981264.1| HTH-type transcriptional activator TtdR [Achromobacter xylosoxidans
           A8]
 gi|310763100|gb|ADP18549.1| HTH-type transcriptional activator TtdR [Achromobacter xylosoxidans
           A8]
          Length = 301

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 132/294 (44%), Gaps = 8/294 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L++   + R+G  + AA +L ++ +++S++++ +E  +G++L  R  R L+LT +G  
Sbjct: 5   NELQLVVELVRAGGMSAAARELGVTPAAVSKRLAQIEARLGVRLVNRSTRRLSLTAEGEV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++E     +      P G L++   +  G++ +   + EF   YP++ +Q
Sbjct: 65  YLENARRILGEIEDLDQLIASRQDSPRGLLKVNAPLGFGRSYIAPAIAEFAQAYPEVSLQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D   D  D A+R    +  + LI RK+        A+P YLK    P++  +
Sbjct: 125 LQLTDSPADFVQDAFDVAVRFGD-LPDTRLIARKIAPNRRLVCASPGYLKTHGVPVTPHD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H  I              W  T  R     ++   L  N     + + + G GI   
Sbjct: 184 LARHQCIVLRQNEAAYGL---WRFTKGRRSETVKVRGNLSSNDGEVTLTWGLAGLGILQR 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++ +     +  LV+++ED   P   +Y  +PE    + K++ F +F+    R
Sbjct: 241 AEWDLARYLRSGRLVQVLEDYALPQADIYAVFPERHHLSAKVRVFVDFLVAYFR 294


>gi|23499940|ref|NP_699380.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|161620258|ref|YP_001594144.1| hypothetical protein BCAN_B0178 [Brucella canis ATCC 23365]
 gi|163844367|ref|YP_001622022.1| hypothetical protein BSUIS_B0181 [Brucella suis ATCC 23445]
 gi|254699474|ref|ZP_05161302.1| LysR family transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|254702597|ref|ZP_05164425.1| LysR family transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|254706271|ref|ZP_05168099.1| LysR family transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|254711436|ref|ZP_05173247.1| LysR family transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|256014964|ref|YP_003104973.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|256029934|ref|ZP_05443548.1| LysR family transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256043097|ref|ZP_05446041.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256059587|ref|ZP_05449785.1| LysR family transcriptional regulator [Brucella neotomae 5K33]
 gi|256111917|ref|ZP_05452873.1| LysR family transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|256157762|ref|ZP_05455680.1| LysR family transcriptional regulator [Brucella ceti M490/95/1]
 gi|256253270|ref|ZP_05458806.1| LysR family transcriptional regulator [Brucella ceti B1/94]
 gi|261220386|ref|ZP_05934667.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261313717|ref|ZP_05952914.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261319041|ref|ZP_05958238.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261323554|ref|ZP_05962751.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261749926|ref|ZP_05993635.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261753179|ref|ZP_05996888.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|265986955|ref|ZP_06099512.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265989532|ref|ZP_06102089.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993366|ref|ZP_06105923.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|265996265|ref|ZP_06108822.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|23463518|gb|AAN33385.1| transcriptional regulator, LysR family [Brucella suis 1330]
 gi|161337069|gb|ABX63373.1| Hypothetical protein BCAN_B0178 [Brucella canis ATCC 23365]
 gi|163675090|gb|ABY39200.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|255997624|gb|ACU49311.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260918970|gb|EEX85623.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261298264|gb|EEY01761.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261299534|gb|EEY03031.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261302743|gb|EEY06240.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261739679|gb|EEY27605.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261742932|gb|EEY30858.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|262550562|gb|EEZ06723.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|262764236|gb|EEZ10268.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|263000201|gb|EEZ12891.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|264659152|gb|EEZ29413.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
          Length = 306

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LT
Sbjct: 1   MMSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 61  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P
Sbjct: 121 DLTVNMQLSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI       LQ NS   + +  + G G
Sbjct: 180 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPTGPLQTNSSEIVREAVLAGLG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 234 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|254227712|ref|ZP_04921143.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|151939754|gb|EDN58581.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
          Length = 309

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  V   G+FT  A QL  S S++S+ I+ LE ++G++L +R  R L LTE
Sbjct: 1   MDKLSLIKLFVSVVDLGNFTAVANQLGQSPSTVSKAIARLEQDLGVRLVHRTTRQLQLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        EV + L++++ +L +S   P G LR++  +  GQN +   + EF   YP+
Sbjct: 61  AGFNYLETAREVINLLKSSEEQLHQSIASPFGTLRVSLPLSFGQNYITPLIPEFCERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++   I     D AIR  + +  S+LI R+L  I M  +A+P Y+K    P 
Sbjct: 121 VKLDLSFSDEYTSILESGMDVAIRSGR-LNDSNLIARRLCPIDMGMFASPEYIKKFGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
           S++ L++H  I +     +          +D  + E      + V++  ++     LG+G
Sbjct: 180 SVEALNQHKWIMY--RYKQSGRLLTLTMPLDGQLVEFSPTHQVTVDNGYAMASLASLGAG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IAL+P Y+ +D      L+ + E   T    VY  YP       K+K F ++I  K 
Sbjct: 238 IALMPQYLARDLVQQGKLMLVSEPQRTDGQGVYIYYPSRKFVPAKVKVFIDYIIHKL 294


>gi|116050380|ref|YP_790803.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585601|gb|ABJ11616.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 304

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 132/293 (45%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  +D +  F  VA   S T AAE++ LS+S IS+++S LE  +G++L YR  R +  T
Sbjct: 1   MSLRFDDIEAFLNVAELNSVTSAAERMSLSKSVISKRVSDLERRLGVRLLYRTTRNVEPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++       +L      +        G+LRI T +  G   L   + +F+  +P
Sbjct: 61  EAGHFFYKAAKASLQELNNAAEIVALRENDLCGELRIVTPMSFGTLWLSPIIADFMSQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L +D++  D   +  D +IR+ + +  SSLI R L         +P Y +     
Sbjct: 121 RLEIVLQMDDRLTDFEKEGYDLSIRVTR-LDDSSLIARPLANSQRVVCCSPDYAERHGTL 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L +H  + + +  P  +  F       +P           N+  ++    + G G
Sbjct: 180 DTLEQLMQHECLGYNNATPSQVWTFEPAFPGAKPRAVSPRGRFSSNNGQAMRDAALRGQG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +ALLP +IV ++     LV     +      +Y  Y  A   + K+KAF   +
Sbjct: 240 LALLPLFIVAEDLKNGRLVDAAPSLRPLDDVIYAMYSRAAAMSPKVKAFIQHL 292


>gi|254719916|ref|ZP_05181727.1| LysR family transcriptional regulator [Brucella sp. 83/13]
 gi|265984923|ref|ZP_06097658.1| transcriptional regulator [Brucella sp. 83/13]
 gi|264663515|gb|EEZ33776.1| transcriptional regulator [Brucella sp. 83/13]
          Length = 306

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 128/294 (43%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  +  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LT
Sbjct: 1   MMSSLADMEIFARIVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 61  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P
Sbjct: 121 DLTVNMQLSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E  N       PI       LQ NS   + +  + G G
Sbjct: 180 QTIEDLQDHICLAPHNNDPWRLEGPN------GPIVIRPTGPLQTNSSEIVREAVLAGLG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 234 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|221065606|ref|ZP_03541711.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|264679844|ref|YP_003279753.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|299530586|ref|ZP_07044005.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|220710629|gb|EED65997.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|262210359|gb|ACY34457.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
 gi|298721427|gb|EFI62365.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 305

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 143/302 (47%), Gaps = 9/302 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D + +F  V  +GSFT  A++   +Q ++++Q++ +E  + ++L  R+ RG++LTE
Sbjct: 1   MDRLDAMHMFVRVVETGSFTKVAQEFATTQPTVTKQVAAMEARLKVRLLNRNTRGVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +   +  ++    +  G+LRI +++  G+ +L     +F+   P 
Sbjct: 61  AGALYYEKCKIIVSDVAEAENVVKVRQTQVQGQLRIGSSVAFGRRVLIPLAMDFMKHNPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L  +++  D+  +  D A+RL K +  SSL  R L        A+  YL+    P 
Sbjct: 121 VQVDLSFEDRYTDLVANGIDVALRLGK-LADSSLGARMLGVNPWVLVASNTYLRKHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H+ + +  +  +  + +        P+  P    L+ N+  +++       GI
Sbjct: 180 RPSDLKEHSTLIYSSV--QGNDIWRLRNASGEPVSIPVTGRLRSNNLSALLAAARSHMGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD-- 296
           A LP Y+ +D   +  +V +++    P   ++  YP       K+++F  F+  K  D  
Sbjct: 238 AALPRYVAQDSLKDGRVVEVLKTCRLPEQEIHAVYPSPRLVPQKVQSFIAFLQGKFDDAW 297

Query: 297 WK 298
           W+
Sbjct: 298 WE 299


>gi|91224808|ref|ZP_01260068.1| transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91190354|gb|EAS76623.1| transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 302

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAEQL +S+S +SRQI+ LE ++G+ L  R  R L LTE
Sbjct: 4   HINLADIRSFVLIAQLGNFTKAAEQLGVSRSHVSRQITNLEQQIGVTLLQRTTRTLNLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G  L++      H ++   + + +      G +RI      LG++++   + +FL+ +P
Sbjct: 64  AGKVLYKQCETALHNIDQAVMAVVDDVEDLRGDIRINCVGGYLGEDVVADIVAQFLIQHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L   +  +D+  D  D A R+ K +  S+ I RKL+ + M  YA+P+YL+    P
Sbjct: 124 QVSINLDFSSHRVDLIADEFDIAFRMGK-LDDSNFIARKLIDVEMGTYASPNYLETYGYP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L+KH  +T G +     E+ N   + +  I       L+  S   +++  + G+G
Sbjct: 183 SHPKDLEKHVCLT-GSVTRWAFENTNTKQSTEHQI----RGQLRCKSGRVMIKAALAGNG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P    +       L  +  +   PS      Y        +++AF +F
Sbjct: 238 IIRVPALYCQQELQTGKLKEVFTNWSIPSVEFSLLYHHDRHQPKRIRAFVDF 289


>gi|317405599|gb|EFV85900.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 298

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 137/296 (46%), Gaps = 7/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LRVF  V   G F  A+ QL LS +++S+ I+ LE  V ++L  R  R ++LTE
Sbjct: 1   MDHLTALRVFRQVVEQGGFAAASRQLGLSPAAVSKNIAELEAHVAVRLLNRTTRRMSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +   + +   L    + +     +P+G LR++  + L   LL   +  FL  +P 
Sbjct: 61  AGRQYYEQVARILDDLHDADMSMGPLQQEPTGTLRVSAPMSLSLTLLATAMPRFLARHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L+++ ID+  +  D AIR    ++ SSL+ RKL+T+      AP YL+   EP 
Sbjct: 121 LSLDLHLEDRRIDLIREGFDVAIRGSDRLEESSLVARKLMTLEHVLCGAPAYLRQHGEPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +   + F          F     V+R          +VNS L++      G G+
Sbjct: 181 APADLRRLECVRFTLSGHADEWTFQRAGQVER---VQVRGRYKVNSSLAVRDALRAGLGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +L+P   V+ +     L +++ D       VY  YP       K++A  +F+  + 
Sbjct: 238 SLVPRVYVQADLEIGALRQVLTDWTPVETDVYVVYPSRRHMVAKVRALVDFLVEEL 293


>gi|290509190|ref|ZP_06548561.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289778584|gb|EFD86581.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 305

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 136/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT 
Sbjct: 1   MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  +++  + EL  S  +P+GKLRI+  + +G  LL      F  LYP 
Sbjct: 61  EGAAFLTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPAFTAFTRLYPQ 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ +++  +  D AIR  + +  S LI RKL        A+P YL     P 
Sbjct: 120 VELDLDFSDRLVNLIDEGFDVAIRSGE-LADSRLIARKLGGFRFVLCASPAYLAEYGVPG 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
           S  EL  H  I F    P       W     R  G+ R  + + VN+  + ++    G G
Sbjct: 179 SPAELAAHKCIFF--RFPSTGLIQPWELRDMRLTGDFRATAVMTVNNIEAAIRLSAAGMG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +PD++V+   D   L  ++             +P +   + +++ F +F+
Sbjct: 237 IAYVPDFVVREAMDEGQLQEVLPGCCVKDGHFSVLWPASRYLSPRIRCFIDFM 289


>gi|270264875|ref|ZP_06193139.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041173|gb|EFA14273.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 306

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 136/289 (47%), Gaps = 4/289 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F ++   GSF+ AAE   ++ S +S++I  LE  +G +L YR  R LTLTE G  
Sbjct: 9   NDLILFALIVDCGSFSKAAETAGVTSSVVSKRIGRLEKSLGARLLYRTTRSLTLTESGLA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++   ++  K++     + E S + +G +R++     G+ LL  ++ EF   +P+++++
Sbjct: 69  LYQQAKDIGMKVQDALYAVSEKSEELTGTVRMSVPTISGELLLSESVAEFCAQHPNLKVE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+  +  D AIR    +  SSLI R ++        +P YL+   +P S  +
Sbjct: 129 MRLENRFVDLVEEGVDLAIRTG-TLPDSSLIARPILDSRWVIVCSPGYLERHPQPQSAAD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN +T+                 +          L  N+  +I +  + G GIA++P
Sbjct: 188 LLEHNCLTYTYQESGTDNWLMKQPGGNDIYELQVNGNLSANNARAIRKAVIGGYGIAMVP 247

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +   +  LV I+         VY  YP       K +     I 
Sbjct: 248 RCMVYEDLQDGKLVEILAGHCAKVLGVYAVYPYTRNLPLKTRLLIEHII 296


>gi|307729917|ref|YP_003907141.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584452|gb|ADN57850.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 333

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE G+
Sbjct: 4   LQSMRVFVKVADLGSFVRAATSLDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   LE  +  L     +P G LRI   +  G   L   ++ +   YPD+  
Sbjct: 64  TYLERVRHILDDLEGVEQMLAARHHEPVGTLRIVAPVVFGLQSLAPAVQSYAARYPDVVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++  D+  +  D  I + +P +S+S++ R+L T  +   A P YL+    P   +
Sbjct: 124 DVTLADRQADLVDEGFDVGILIGRPARSASIVTRRLTTCQLTVCATPAYLQRHGTPTRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +      P+   +    +    P+     + +  N+   + Q+ +LG G+A+L
Sbjct: 184 DLRSHPCL---SRPPEQGGEERVFSGPQGPVRVRPANAIAANNSEMLRQFALLGMGVAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P Y++  +     LV ++ D   P   +   YP  L    K++ F + +    +
Sbjct: 241 PSYLIGRDLAEGRLVELLGDYRLPEIEITIAYPSRLHLPAKVRTFVDHLVEHFQ 294


>gi|301347431|ref|ZP_07228172.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB056]
 gi|301512549|ref|ZP_07237786.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB058]
 gi|301595885|ref|ZP_07240893.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB059]
 gi|332850421|ref|ZP_08432741.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332871859|ref|ZP_08440282.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332730692|gb|EGJ62003.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332731188|gb|EGJ62488.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 337

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 143/290 (49%), Gaps = 8/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  + SF+ AA+ L L ++S++  I  LE  + ++L  R  R ++LT  G+  +
Sbjct: 1   MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T+ +   +   +    ++   P G+LRI   + +G+ +L   L++F   YPDI + + 
Sbjct: 61  DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  DCAIR+ + ++ SSLI R++ T      A+P YL+   EP SI++L 
Sbjct: 121 LNDRPVDLVGEAVDCAIRVGE-LKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQ 179

Query: 188 -KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  I F     +   +F+W   VD  I    +   + VN   + +   + G GI   P
Sbjct: 180 KNHKAIHF--FSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            Y++    ++  L  ++         +   Y +    + K+K F +++  
Sbjct: 238 RYMLTNHLESGLLKEVLPRWTPAPMPISAVYLQNRHLSLKVKVFVDWVAE 287


>gi|307245554|ref|ZP_07527641.1| hypothetical protein appser1_7580 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254509|ref|ZP_07536345.1| hypothetical protein appser9_7570 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258967|ref|ZP_07540698.1| hypothetical protein appser11_7640 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853613|gb|EFM85831.1| hypothetical protein appser1_7580 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862559|gb|EFM94517.1| hypothetical protein appser9_7570 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866991|gb|EFM98848.1| hypothetical protein appser11_7640 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 298

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 134/292 (45%), Gaps = 11/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE
Sbjct: 1   MDKLNAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+
Sbjct: 61  AGLLYYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P 
Sbjct: 121 IQLNIEFSDRRVDVVAEGYDLVLRIGA-LEDSSIVAKRIARSELVLLASPEYLAKHGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H  + + +       D       D+ +     + +  N+  +++Q    G GI
Sbjct: 180 NLAQLAEHTCLIYENHQQWQFTD------GDQKVKIKPNAHVISNNGYALLQMTKAGQGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++ K+      LV I+      S  +   YP     + K+K    F+
Sbjct: 234 VNLPLFLAKEEISAGKLVEILPQYKQHSIDISILYPHRRYLSPKVKVLIEFL 285


>gi|222081973|ref|YP_002541338.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726652|gb|ACM29741.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 291

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 140/291 (48%), Gaps = 7/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VA   SF+ A  +L LS S++S+ ++ LE  +G +L  R  R L LT +G    
Sbjct: 1   MDVFVQVAELRSFSAAGRKLRLSPSAVSKLVTRLEDRLGTRLLVRTTRSLQLTPEGEVYL 60

Query: 68  RVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +   ++  +  +       P G+LR++ ++  G   +   + EFL LYP++++++
Sbjct: 61  ERAQAILADIQEAERMVAAGGAAVPHGRLRVSASVAFGVCYVVPLIPEFLTLYPEVELEI 120

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  IDI  + AD AIR+   ++ SSL  RKL+       A+P Y++    P +  +L
Sbjct: 121 SLSDSVIDIVGERADVAIRVGS-LRDSSLKARKLLESRRVIVASPAYIERKGRPETPDDL 179

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D HN +TF          F    T    + +P    LQ N+  ++   C+ G G+A +  
Sbjct: 180 DHHNCLTFNFRPTAEGWSFRDPHTGSVSV-KPVFGNLQANNGPTVRSLCLAGVGLARVGQ 238

Query: 247 YIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK 293
           + V+   D   LV ++ED        ++  Y        +++AF +F+ L+
Sbjct: 239 FHVQPDLDAGRLVPVLEDFNPEDIEMIHAVYAGHDHLAARIRAFIDFLALR 289


>gi|83954563|ref|ZP_00963274.1| Putative transcriptional regulator, LysR family protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83840847|gb|EAP80018.1| Putative transcriptional regulator, LysR family protein
           [Sulfitobacter sp. NAS-14.1]
          Length = 289

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 138/292 (47%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA + SFT AA  L +S + +SRQ+  LE  +  KLFYR  R +T+TE 
Sbjct: 2   LSWEGVSEFVAVAEAQSFTAAANSLGISTAQVSRQVGALEARLDTKLFYRTTRKVTITET 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    +V   L   +  + +    P G+L +   +  G+N +   + +F+  YPD+
Sbjct: 62  GQVYYNHCRQVLDGLAEAERAITDLHQSPKGRLNLTAPVTYGENRIAPLVNDFVRRYPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L N+ +D+  +  D AIRL + ++ SS++ ++L +   +  AAP YL     P +
Sbjct: 122 EVNLRLTNQLLDLVAESYDLAIRLGE-LEDSSMMAKRLASRRHYTCAAPEYLSAHGTPHT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + ELD +N +              W           R+   L+ NS  S++   +   GI
Sbjct: 181 LSELDGYNCL--------QGTLGYWRFQEKGTTRHIRVKGNLRCNSGASLVDAALKNLGI 232

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V+       L+ +++    P   ++  YP+    + K++   + +
Sbjct: 233 IQLPDYYVEAELRAGRLIPVLDSYRAPDDGIWAIYPQNRHLSPKVRLLLDHL 284


>gi|330975375|gb|EGH75441.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 298

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 138/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G FT AA +L +S S +SRQI  LE  +  +L YR  R + LTE G 
Sbjct: 6   WEGLDEFVAVAECGQFTAAALRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    E     + + + +P G LR+   +  G+  +   +  F+ LYP +++
Sbjct: 66  TFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTCAVAYGERFITPLVTRFMDLYPHLRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +Q S L+  +L    M+  A+P Y++    P S+ 
Sbjct: 126 DIELSNETLDLVHEGMDLAIRLGR-LQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++HN +  G        D   L    R   +      + NS  +++   + G G+  L
Sbjct: 185 ELNRHNCLIGGS-------DTWQLQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V+   ++  LV ++E    P+  V   YP+    + K++   +++  
Sbjct: 238 PDYYVQKHLNDGTLVSLLEAHQPPNTAVGGLYPQQRHLSPKVRKLVDYLKE 288


>gi|123441267|ref|YP_001005254.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088228|emb|CAL11016.1| putative LysR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 300

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 148/298 (49%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V   GSF+ AAEQL  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTVKKLENKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +  ++ T + EL ++ + P G LRI     +  +++   + EF   YP
Sbjct: 61  QEGEHYFRRVQNILREMATAENELLDNQLNPKGLLRIDAATPVVLHIIAPLMAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  RKL+T + H  A+P YLK    P
Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRVG-TLQDSTLRARKLMTSYRHILASPAYLKQYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L+ H  + F DL          LA  D  + E + S L  N+  +  + C+ G+G
Sbjct: 180 QTAADLEHHLCLGFNDLPTLNRWP---LAGADGQLYEIK-SDLASNNGETQRRLCLEGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++++ +    +L+ I+ +   P +  +   Y      + +L+ F +FI  + 
Sbjct: 236 IACLSDFMIQQDLQRGDLIAILREHTLPVAMPINAVYYSDQAVSNRLRCFIDFINERL 293


>gi|262278567|ref|ZP_06056352.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258918|gb|EEY77651.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 304

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 142/296 (47%), Gaps = 6/296 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    +++F  VA + SF HAAE L L  S+++  I  LE  + ++L  R  R ++L
Sbjct: 1   MRLDRIQAMQIFVRVAEAESFIHAAEALSLPASTVTSTIKNLEKYLQVRLLNRTTRRVSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G++      E+   +E T+  L  +  +P G+LR+     +  +++  NL+EF   Y
Sbjct: 61  TPEGAEYLTQCREILDLIEHTESNLTNAIKQPQGRLRVDMPAGIAHSVIMPNLQEFQGRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI + + + ++ +D+  +  DC IR+   +++S+L+ R L        A+  YLK    
Sbjct: 121 PDIYLMIGVSDRQVDLIKEGVDCVIRMGN-LENSTLVARPLGEFRWVTCASAAYLKENGI 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L  H  I +     +   +  ++   ++   +     + VN     ++ C+ G 
Sbjct: 180 PQTPDDLAHHRAIHYFSGNNRHTGEMRFVRNGEKKTVQMN-GTVAVNETELYIKMCLEGY 238

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G++ L + +V ++     L+ +++D      TV   YP     +  ++ F +++  
Sbjct: 239 GLSQLAERLVTEHLKEKRLIPVLQDWCPSPVTVTLLYPHQRFLSPAVRVFSDWMAE 294


>gi|116249016|ref|YP_764857.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253666|emb|CAK12059.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 313

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 137/286 (47%), Gaps = 7/286 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A   S+  AA    +S S+I + ++ LE  +G++LF R  R ++LTE+G+ L+  
Sbjct: 9   AFVHAAEQQSYVAAARVGGVSPSAIGKAVARLEGRLGVRLFNRTTRSISLTEEGAVLYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   ++  +  +  S  +P G+LR++    +G +LL   L  F   +P+I++ +  +
Sbjct: 69  YKRIIDDMDDAEATISRSRERPRGRLRVSVPHIVGHHLLMPILPIFAEQFPEIELDIDFE 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +K  D+  +  D  +R  + +  + LI R+L   H     +P YLK    P +  +L +H
Sbjct: 129 DKVTDLVAEGLDVVVRSGE-LADARLIARRLGDQHFVVCGSPDYLKRHGRPETPDDLSQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I F       +  + + +  DR I       L  N+  + ++    G GIA LP Y+ 
Sbjct: 188 ACIHFKYPSSGRLAPWAFRSPYDRVIFP---RTLTFNNTDAGLRAARDGLGIAHLPVYVA 244

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + +    +LV ++   + P  ++   +P   + + K++AF +F+  
Sbjct: 245 EPHMRTGSLVPVLTSFMVPYGSLSLVWPSNRQLSPKVRAFVDFVAA 290


>gi|33594327|ref|NP_881971.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33564402|emb|CAE43709.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|332383738|gb|AEE68585.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 303

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 139/288 (48%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ F  V   GSF  AA++   ++S ++RQ++ LE + G++L  R  R L+LT+ G   
Sbjct: 6   AMQTFARVVELGSFAAAADKTDQARSVVTRQVAFLERKYGVRLLNRTTRKLSLTDAGRAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V  +L    + LQ    +P+G+LRI+  +  G   L   + ++LL YP++ I L
Sbjct: 66  YDRIRPVLAELAELDLALQAQGSQPAGRLRISAPVSFGVLHLGPAIADYLLRYPEVVIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ +D+  +  D A+R+  P+  SSL+ R L    + A AAP YL+    P   ++L
Sbjct: 126 DLNDRVVDLVEEGYDVAVRIG-PLVDSSLVARPLAPQQLVACAAPAYLERYGAPAQPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  + +           +W    D      R+ +  + N+   +    + G GI L P
Sbjct: 185 RRHRCLHYAYASTGN----DWHFEKDGQTHVVRVNATFRANNGDVLRTAALAGHGIILQP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++V ++     L  ++ D      T+   YP     + K+++F   +
Sbjct: 241 EFLVGEDLRAGRLTALLTDYRHSLITMMAVYPHRRFLSPKVRSFVEHL 288


>gi|332307390|ref|YP_004435241.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174719|gb|AEE23973.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 301

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 13/295 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L++F  +AR+ + + A ++  LS +  S  IS LE  +G++L +R  R ++LTE+
Sbjct: 1   MNIEHLKLFVRIARTCNISAAGQEQDLSPAVASAYISKLEDNLGVRLVHRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+   +ET +  + +    P G LR+      G+  +   L EFL  YP++
Sbjct: 61  GEAFLPHAEEILTNIETARASIGDGEHNPKGVLRVTAPASFGRMHIVPALAEFLARYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +    ++  +D+     D AIR    ++ S+L  RKL        A+P Y+K   EP +
Sbjct: 121 SVDFRFNDSIVDLVEGGFDIAIR-DAALKDSNLFARKLAPDRRIVCASPKYIKEFGEPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
            Q++  H  +    L         W    ++     + +  +++++  ++    + GSG+
Sbjct: 180 PQDVANHQCVNLKGLD-------TWEFEAEKGSVSVKANGKIRIDNGEAVRDAGIEGSGL 232

Query: 242 ALLP---DYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +      Y    +  LV++++D        ++  YP   +   K++AF +F   
Sbjct: 233 VMSSIWCAYQALQSGQLVQVLKDYPMVSKTAIWAVYPSNRQLAPKVRAFIDFFLE 287


>gi|239995733|ref|ZP_04716257.1| probable transcriptional regulator, LysR family protein
           [Alteromonas macleodii ATCC 27126]
          Length = 301

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L+ F VVA  GSFT AAE+L  S   +S+ ++ LE ++  +LF R  R + LTE
Sbjct: 1   MDKLSLLKTFCVVANEGSFTKAAEKLDTSNQLVSKYVAELEKQLDTRLFNRTTRKIHLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +  + +   +   + +L   + +  G L ++  +      L   L  F   +P 
Sbjct: 61  AGQQCLQHANHILESVTDMESQLGLLNTEAKGVLHVSAPVSFSTLHLASALSAFQQAHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L+++ ID+  +  D AIR    + +SSL+ +K+ TI +   A+P YL+    P 
Sbjct: 121 VSINLQLNDRKIDVIDEGFDVAIRAGH-LANSSLVAKKITTIKLALCASPAYLEKYGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL   + + +  +      D + L    +   +     L  N+   +      G G 
Sbjct: 180 HPAELKPEHYLEYSYV--NYDNDKSALIAALKANAQTVTPKLTANNGEVLTNVAKQGEGY 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P +I  +   N  LV I++D +  + ++Y  YP     + KL+ F +F+
Sbjct: 238 VLQPTFIAGEALKNGELVSILDDFVPQAISLYAVYPHRKLISNKLRVFIDFL 289


>gi|332975624|gb|EGK12513.1| LysR family transcriptional regulator [Psychrobacter sp.
           1501(2011)]
          Length = 302

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 144/295 (48%), Gaps = 6/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V  +GS T AAEQL++++S++SR +  LE  +  +L  R  R  TLTE G 
Sbjct: 4   LEDMTMFIRVVDAGSITKAAEQLNIAKSAVSRCLKELEMRLNTQLISRTTRNSTLTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           K ++    +  ++E    ++   + +  G +R+   +  G   L   +  +   +P +  
Sbjct: 64  KYYQEACSILGEVELLNEKISGVASQLEGTMRLTAPLSFGLMHLNDIIHNYAQQHPQLSF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ ID+  +  + AIR+ + ++ SS   ++L  I     A+P Y+K    P SI+
Sbjct: 124 ELDFSDRQIDLVEEGYEMAIRIGE-LKDSSYQAKRLTVIRRVLCASPEYIKQAGIPDSIE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H+ + +G L  K  E     AT  R   E   S ++ N+   ++   + G GIA +
Sbjct: 183 SLKQHSFLQYG-LQNKQGEILLIDATGQRHKIETS-SRIKANNGNFLLDMAIKGHGIAYM 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P +I  ++     LV +MED   P+ T Y  YP+    + + +   ++I  +  D
Sbjct: 241 PTFIAYESLAKGELVPVMEDYHLPTLTAYAVYPKNRFLSQRCRLLIDYIIEQIGD 295


>gi|325521761|gb|EGD00507.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 330

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTEHFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLAEHPSLSLPT---EYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|83746962|ref|ZP_00944008.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83726382|gb|EAP73514.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 301

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 130/297 (43%), Gaps = 8/297 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D    +  F  V  +G+FT AA QL +S   + + +  LET +G +L  R  R  +LT
Sbjct: 4   NMDKLRGMETFVAVVDTGNFTEAAVQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +     V  ++   +  ++    +PSG LR++     G  ++      F   +P
Sbjct: 64  DAGRVFYDDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L L N+ +D++ +  D A+R+  P+  + L+ + L    M   A+P YL    +P
Sbjct: 124 QVRVELDLSNRMVDLADEGFDLAVRIG-PLGDADLVAKPLCAYRMAICASPDYLARHGQP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  ++    +     +   L+  D P           N    +    + G+G
Sbjct: 183 ETPADLPAHRCLSH---MVWNRRNAWQLSGWDGPTSWRDDPAFSCNDGHGLRMAAIAGAG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + L P+ +V ++     LVR+++        ++  Y +  +   KL  F + +   A
Sbjct: 240 LLLQPEVLVAEDLASGRLVRVLQPYAPEPRPIHLVYRQDRRPLPKLTGFVDHLLQHA 296


>gi|91776980|ref|YP_546736.1| LysR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710967|gb|ABE50895.1| transcriptional regulator, LysR family [Methylobacillus flagellatus
           KT]
          Length = 291

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 141/295 (47%), Gaps = 13/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++R++  V + G+FT AA  L +S+  +SR++  LE  +G +L  R  R L+ TE G 
Sbjct: 4   LEQMRIYAEVVKHGNFTAAARHLGISKQLVSRRVMELEERLGARLLQRTTRKLSPTELGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +++  + E+  S+ +  G LR++  +     +L   L  F+ L+P++++
Sbjct: 64  VFFTRCQTILQEIDEAEQEVASSTGELRGLLRLSAPVSFASMVLSPALNRFMQLHPNLEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +DN+ +D+  +  D AIR+ K      LI RKL    +    +P YL     P S  
Sbjct: 124 ALDVDNRVVDLVGEGYDMAIRITKQ-PDEGLIARKLADSALAYCCSPSYLAQHGAPQSPM 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  IT         +   WL      + + ++   L+ N    + +  + G GI  
Sbjct: 183 QLGRHRCIT--------SKAGEWLFEDAGELLKLQVHPVLRSNHGEVMCEAAIAGLGIVG 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP++ V+   +   LV+++++       VY  YP   + +  +++F +F+    R
Sbjct: 235 LPEFYVRKALETGALVQVLQEYTADIGAVYALYPPHRQASLMVRSFADFLQEWFR 289


>gi|311108694|ref|YP_003981547.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763383|gb|ADP18832.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           177 [Achromobacter xylosoxidans A8]
          Length = 299

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 137/294 (46%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F +VA   SF  A  QL +S S+IS+ ++ LE ++G++LF R  R + LT 
Sbjct: 1   MDSLSGMTIFVLVAEVRSFAAAGRQLGVSASAISKGVARLEEKLGVRLFQRSTRSVGLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  ++   + EL  ++  P G+LR++    L   L+   +  F   YP 
Sbjct: 61  EGTLFLERCRRILAEIAAAENELTSTTASPKGRLRVSLP--LVSGLMLPAISAFAHRYPQ 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++ +D+  +  D  +R  + +  S L+ ++L +       AP Y      PL
Sbjct: 119 IELDLDFSDRLVDVIAEGFDAVVRTGE-LSDSRLLSKRLGSSRFVYVGAPGYFAQRGTPL 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H  +         +E + ++      +     + +  N   +++   V G GI
Sbjct: 178 HPEELTQHACLMHRFPTTGTLEKWPFVRPPSETVIR-LTASMTSNHVETLLHMAVQGHGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A LPD+ V+   ++  L  +++     S T +  +P   + + +++AF +F+  
Sbjct: 237 ACLPDFAVQPALESGALQIVLDRWAGSSSTFWVLWPSNRQLSPRVRAFVDFMAE 290


>gi|119947131|ref|YP_944811.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
 gi|119865735|gb|ABM05212.1| transcriptional regulator, LysR family [Psychromonas ingrahamii 37]
          Length = 298

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 136/297 (45%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W  +  F  VA   SFT A ++L +S + +SRQI+ LE  + ++L YR  R +++T++
Sbjct: 1   MQWQGINEFVAVAEMHSFTLAGKKLKISTAQVSRQINALEKRLNVRLLYRTTRHVSVTQE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    V   L   +  +     KP G ++++  I  G+  +   + +FL  Y  I
Sbjct: 61  GQIFYQHCHNVLEGLAAAEQAISSLQAKPQGHIKLSAPITYGEQKILPLINDFLCRYERI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+   L N+ +D+     D AIRL   +  SSL+ +KL        A+P YLK   EP S
Sbjct: 121 QVTCELTNQRVDLVDGGFDLAIRLGD-LPDSSLVAKKLAARENFVCASPEYLKKFGEPHS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +HN +           D+       +         L+ NS   ++   +   GI 
Sbjct: 180 LSELVQHNCLL-------GTRDYWHFTEQGKEKNIRVRGNLRCNSGFGLVDAALKNIGII 232

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LPDY ++++     L+ ++ +V      ++  YP+    + K++   +F+     D
Sbjct: 233 QLPDYYLQEHINSGKLISLLNNVRVAEEGIWAVYPQNRYLSPKIRLLIDFLAEHFAD 289


>gi|221198994|ref|ZP_03572039.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205254|ref|ZP_03578270.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175045|gb|EEE07476.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181445|gb|EEE13847.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 294

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   +   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHVSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A  +P YLK    P +
Sbjct: 121 RLNLDLTDRRVDVIGEGFDLVLRIGA-LEDSTLIARALGAWKMIACVSPAYLKRHGAPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H  + +G       E          P        L  N+   +    + G GIA
Sbjct: 180 PAELANHTCLLYGRERRVGWE----FRVDGAPRTFDVQGPLVANNGEVVRDAAIAGLGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP +IV    D+  LV +++       T+   +P+  +    L+ F  F+  + 
Sbjct: 236 LLPSFIVGAALDSGALVPVLDAYAPAPITLNAVFPQHREGFVTLRTFIGFLAERL 290


>gi|146307756|ref|YP_001188221.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575957|gb|ABP85489.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 306

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 132/293 (45%), Gaps = 12/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D   +F  V    SFT AA  L + +S++SR+I+ LE  +G++L  R  R L LTE 
Sbjct: 1   MGLDDALIFTRVVECHSFTQAATSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++       +  + +   +PSG LRI + I+ GQ  L   L EF+  YP I
Sbjct: 61  GQAYYERCRQIMLDFAEAEQAVMQLQREPSGLLRITSPIEFGQLFLGRVLGEFMRQYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++ L ++ +D   +  D AI++ +P Q S+LI RKL        A+P YL     P S
Sbjct: 121 DAEVELTSRSVDPLEEGVDIAIQVGQP-QDSTLIARKLFESGRRLCASPAYLAAHGTPRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL+ H  I      P+            R         +  N+     +  + G+GI+
Sbjct: 180 VAELEGHRAILLQHDAPRYWPLLGEHLPCQR--------VMTCNNITFAREATLAGAGIS 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP  I ++   +  LV ++ +   P   VY  YP       K+K F +F+  
Sbjct: 232 GLPVMISEEAVRSGRLVELLPEARLPVGEVYAIYPSRRFQAMKVKTFLDFLIA 284


>gi|283787836|ref|YP_003367701.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282951290|emb|CBG90985.1| LysR-family transcriptional regulator [Citrobacter rodentium
           ICC168]
          Length = 299

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 133/299 (44%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+ L L + S+SRQI  LE  +G +L +R  R + LT+
Sbjct: 1   MDKIHAMQLFIRVAELESFSRAADALGLPKGSVSRQIQALENALGTRLLHRTTRQVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    E+   LE      Q  +   SGKLR+   + + +NLL   L  FL  +P 
Sbjct: 61  DGMVYYERAKELLSNLEELDGLFQYDTASISGKLRVDMPVSVARNLLIPRLPAFLQQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+    Q + LI R L  + +   A+P YL+    P 
Sbjct: 121 IELELSSSDRLVDVIREGFDCVVRVGTQ-QDAGLIARPLGKLTVINCASPQYLERFGYPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H ++ +          F  + T+           L VNS  +    C+ G GI
Sbjct: 180 SLDDLASHAVVHYSINSATRPSGFE-IVTLAGTQWIKTGGTLTVNSTETYHAACLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              P   V++      LV I+         V   YP     + ++  F  ++    +D+
Sbjct: 239 IQTPRVGVREALRRGALVEILPQYRAAPLPVSLLYPPRRHLSRRVHLFMEWLSGVMKDY 297


>gi|34496571|ref|NP_900786.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34102425|gb|AAQ58791.1| probable transcriptional regulator LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 294

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 130/290 (44%), Gaps = 8/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSFT AA+   LSQ  + + I+ LE  +G KL  R  R   LTE G   +
Sbjct: 7   MELFVAVVEKGSFTAAADAHRLSQPMVGKHIAALEQRLGGKLLVRTTRRQQLTELGQHYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +L   +        +P G LR+  +I  G   L   L EF+  +PDI ++L 
Sbjct: 67  QRCRAILAELAAAEDAAALLRAQPRGVLRVNASITFGTLRLAPLLAEFMARWPDIGVELE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D+  D  D   R+ + +  S ++ R+L    M   A+P YL     P +  +L 
Sbjct: 127 LSDQLADLVADGYDAVFRIGR-LADSGMVARRLRPYRMMIAASPAYLAARGTPATPADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + F     +   D  W A         R S  Q N   ++ Q  + G+GIAL  + 
Sbjct: 186 DHDCLGFS----RWRRDDGWEALAQLHGVRMRASRFQCNQGQALRQLALSGAGIALQAEA 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++ ++     LV +++  +     ++  YP   +   KL+ F +FI  + 
Sbjct: 242 LLAEDVAAGRLVSLLDGYLPDPKPMHLIYPADRQPLPKLRVFVDFIVERL 291


>gi|152989498|ref|YP_001346893.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964656|gb|ABR86681.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 302

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA +G FT AAE++ +S S ISRQ++ LE  +  +L YR  R ++L+E G 
Sbjct: 4   WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     + + S +P G LR+   +  G+  +   +  F+  YP +++
Sbjct: 64  TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  S L+  +L    M+  A P YL+    P S  
Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCATPEYLRRHGTPQSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL + N +     +   +ED        R          + NS  +++   + G G+  L
Sbjct: 183 ELGQFNCLIGSSDLWSFLED-------GRETQHRVQGNWRCNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V D+     LV +++    P+  V+  YP+    + K++   +++  
Sbjct: 236 PDYYVIDHLRSGRLVSLLQGHQPPNTAVWALYPQQRHLSPKVRQLVDYLKE 286


>gi|260769871|ref|ZP_05878804.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|260615209|gb|EEX40395.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
          Length = 308

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 135/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  VA   SF+ AAE+L L ++S+S  I  LET+ G +L  R  R ++LT 
Sbjct: 1   MDRLTAMHTFVRVAELASFSRAAEELGLPKASVSNHIQLLETQAGARLLQRTTRKVSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++  + E       ++  + SG++R+     + + ++  +L EFL  +P 
Sbjct: 61  DGRTYYERCLDLLAEFEELDTLFVQTEQQLSGRIRVDMPTGMAKGVVVPHLAEFLQQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L   ++ +D+  +  D  +R  + +  S+LI RK+  + +  YA+P YL    EP 
Sbjct: 121 VQLELSSTDRRVDVVREGFDFVVRAGQ-LSDSALIARKVCDMAVRTYASPDYLARHGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H L+ +   +    + + +    +R         L VN+  S    C+ G G+
Sbjct: 180 TPDDLSHHQLVHYAQNLGGQPDGWEYWDG-ERLRTIEMAGALTVNNAESYTAACLAGIGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P+  V+    +  LV ++ +       VY  YP       +++   +++  
Sbjct: 239 IQTPESGVRKLVASGQLVEVLANFTCQPLPVYLLYPHRRHLAKRVRVLMDWMTA 292


>gi|167900301|ref|ZP_02487702.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
          Length = 351

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LR+   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRVVAPVVFGLHNLAPVLQTYTQRFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGMPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 YPEQLVEHPCLSLPS---EYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|146308226|ref|YP_001188691.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576427|gb|ABP85959.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 309

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 133/293 (45%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++  F  V  SGS + AA +L  ++S +S++I  LE  +G  L  R  R   LTE G 
Sbjct: 4   LSEMHAFVAVVDSGSISEAARRLGTAKSMVSQRIQQLEKRLGCILLER-GRQTRLTEAGE 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  + +   +E  +  +  S     G LRIA  +  G   L   L  F   YP++ +
Sbjct: 63  VFYRHCTAILADIENAENAVLTSQSSVRGNLRIAAPMAFGMRYLTPILASFAKQYPELYL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +++  +  D A+R+ + +  SSL+ + +        A+P YL     P + Q
Sbjct: 123 DVEFDDRRVNLHEEGFDAAVRIGE-LPDSSLVAKIITPNRHIICASPDYLDAHGTPRTPQ 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +H  + + +  P  M    W   V+  +   R+ C ++ N    +M     G G+A+
Sbjct: 182 DLAQHFGMLYVNREPHGM----WTLPVNDTLESFRVRCRMRTNCGHQLMDAAKAGLGLAI 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP ++      +  L+ ++E        +   Y ++ + + KL+A   F+  +
Sbjct: 238 LPTFLAAQAIVDGELIEVLEPYAPRGGNISVVYRQSQRASPKLRALSGFLSER 290


>gi|54301902|ref|YP_131895.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46915322|emb|CAG22095.1| hypothetical transcription regulator protein [Photobacterium
           profundum SS9]
          Length = 299

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 146/296 (49%), Gaps = 13/296 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++KL  F  V  +GS + A++   +  SSISRQ++ LE+E+GI+L  R  R + LTE G
Sbjct: 7   TFNKLHYFNCVVETGSISKASKVFDVQPSSISRQLASLESELGIRLLERTTRNVGLTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +  +  +  +LE  +  + +  + P G L+I+TT+  G++ +   L +F   YPDI+
Sbjct: 67  KTYYDYSKRIISELEEAKRAVGDLQLSPIGNLKISTTVGFGESRILPLLPKFRQAYPDIR 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ L  + +D+  +  D AIR  + +  SSLI RKLV  H    ++P Y+     P S 
Sbjct: 127 IEVELTERIVDLIEENVDIAIRSGR-LPDSSLIARKLVDNHFLLCSSPEYMDENGLPDSP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ + +G          +W    +          + V+S     Q  + G GIAL
Sbjct: 186 EQLINHDCVVYG-----YHGWKDWYLVKNNFQKLAIKHYMTVDSVNGQKQLILHGGGIAL 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPS----FTVYFCYPEALKNTGKLKAFRNFIFL 292
           +P + VK   D+  L++++ +          + Y  Y      + K++ F +F+  
Sbjct: 241 IPYWAVKDELDSGRLIQVLSEHQFSPCLHLSSTYAIYQNRNLVSSKMRVFLDFLRE 296


>gi|114799877|ref|YP_761650.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114740051|gb|ABI78176.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 303

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 111/292 (38%), Positives = 169/292 (57%), Gaps = 3/292 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW KLR F+  A SGS T A E+L +SQS++SRQI+ LE ++G+ LF RHARGL LT+ 
Sbjct: 1   MDWGKLRSFHAAAESGSLTLAGERLGISQSAVSRQIAALEEQLGVSLFQRHARGLVLTDS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R T E+    ++    L++    P G+L +A  +  G   +   L  F+  +PD+
Sbjct: 61  GHTLYRSTMEMSSAAQSANTALRDQQETPQGELIVAAPVAFGSIWMVPRLGNFVKRHPDL 120

Query: 123 QIQLILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ L LD++ + D+    A+CA+RL  P   + LIQRKL T+  + YA+P YLK    P 
Sbjct: 121 RLDLRLDDQFEYDLLKLEAECAVRLW-PADKADLIQRKLGTLGTNLYASPEYLKAHGVPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+LD H +I +GD      E   +   V R    PR + L+VN+  ++++    G GI
Sbjct: 180 EPQDLDNHRIIAYGDESTPLFE-MAFACRVGRDDAPPRPATLKVNNVFAMLRAVDAGLGI 238

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A +PDY+    P LVR++ +V  P F +YF YP  L+ + ++ AFR F+  +
Sbjct: 239 ADVPDYMAATLPRLVRVLPEVTGPVFDLYFIYPSDLRRSKRVAAFREFLTAE 290


>gi|27367205|ref|NP_762732.1| putative Lactate-responsive regulator, LysR family [Vibrio
           vulnificus CMCP6]
 gi|27358773|gb|AAO07722.1| Predicted Lactate-responsive regulator, LysR family [Vibrio
           vulnificus CMCP6]
          Length = 299

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 129/292 (44%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE+  L+ S +S++I+ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVEQGSFSKVAEENSLTNSVVSKRIARLEEEIGAQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF   +P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPTISGDLILADAVAEFCNQHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+   +
Sbjct: 124 MSLDNRFVDLVSGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPVIPSD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +HN + +        E   W    ++     R+  C   ++  ++ +  + G GIA +
Sbjct: 183 LTQHNCLQYAYQTTGASE---WEFKGEKGNYIVRVAGCFSTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V  +     LV I  + +     +Y  YP   +   K++     I  +
Sbjct: 240 PRCLVYHDFRNGQLVDIFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRER 291


>gi|15601735|ref|NP_233366.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121587016|ref|ZP_01676794.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121726358|ref|ZP_01679632.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147671871|ref|YP_001215098.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153212206|ref|ZP_01948001.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|153801819|ref|ZP_01956405.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|153818185|ref|ZP_01970852.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153821081|ref|ZP_01973748.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|153824692|ref|ZP_01977359.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|153827885|ref|ZP_01980552.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|227812547|ref|YP_002812557.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229505883|ref|ZP_04395392.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229510263|ref|ZP_04399743.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229514390|ref|ZP_04403851.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
 gi|229517606|ref|ZP_04407051.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229522503|ref|ZP_04411919.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
 gi|229528123|ref|ZP_04417514.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229605416|ref|YP_002876120.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254224726|ref|ZP_04918342.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|254284605|ref|ZP_04959572.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|254850145|ref|ZP_05239495.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746283|ref|ZP_05420230.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262158164|ref|ZP_06029282.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1]
 gi|262169237|ref|ZP_06036930.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
 gi|9658422|gb|AAF96878.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121548751|gb|EAX58798.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121631106|gb|EAX63481.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|124116758|gb|EAY35578.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124122653|gb|EAY41396.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|125622789|gb|EAZ51107.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|126511291|gb|EAZ73885.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126521455|gb|EAZ78678.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146314254|gb|ABQ18794.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|148876730|gb|EDL74865.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|149741648|gb|EDM55677.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|150425390|gb|EDN17166.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|227011689|gb|ACP07900.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227015627|gb|ACP11836.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|229334485|gb|EEN99970.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229340488|gb|EEO05494.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
 gi|229345642|gb|EEO10615.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229348370|gb|EEO13328.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
 gi|229352708|gb|EEO17648.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229356234|gb|EEO21152.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229371902|gb|ACQ62324.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254845850|gb|EET24264.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736037|gb|EET91435.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262022518|gb|EEY41226.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
 gi|262030042|gb|EEY48688.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1]
 gi|327485952|gb|AEA80358.1| Predicted Lactate-responsive regulator, LysR family [Vibrio
           cholerae LMA3894-4]
          Length = 299

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN + +        +                      ++  ++ +  + G GIA +P
Sbjct: 183 LARHNCLQYAYQTTGATDWE--FKGAKGNYIVKVSGTFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV +  + +     +Y  YP   +   K++     I  +
Sbjct: 241 RCLVYHDFRNGELVDVFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRAR 291


>gi|325143752|gb|EGC66069.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M01-240013]
          Length = 299

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + I +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAIPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEELAGHQCLGFTE--PGSLNTWAVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++V ++     L+ ++ +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IACLSDFLVDNDIAEGKLIPLLAEQTSNKTHPFNAVYYSDKAVNLRLRVFLDFLVEEL 293


>gi|170696486|ref|ZP_02887611.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138589|gb|EDT06792.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 300

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 139/293 (47%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDRFKQIETFVTVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + H ++  +  +    VK SG LR++     G+  +   +  F + +PD
Sbjct: 61  EGSAFLEDCQRIIHDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTVAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSITLDLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLSRRGAPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           S+ +L +HN +  G       +   W+   D  +   ++S  ++ +    + ++C+ G G
Sbjct: 180 SLADLAQHNCLALG---ASANQQRGWMFQQDGKVVSIKVSGTMECSDGAVLHEWCLEGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGADIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|294085619|ref|YP_003552379.1| LysR family transcriptional regulator [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665194|gb|ADE40295.1| transcriptional regulatory protein, LysR family [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 306

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 136/298 (45%), Gaps = 11/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++R F  V  +GS T AAE+L ++ S++SR++  LE  +G  L  R  R + L E G 
Sbjct: 4   IEEIRAFVTVVETGSLTQAAERLGIAVSAVSRRLKDLELRLGAPLIQRSTRRMYLNETGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  +LE  Q E+Q +    SG LR+   +  G   +   + +F+   PD++I
Sbjct: 64  RFFSRCRTILDELEAAQQEVQNTEGILSGVLRLNAPLSFGITHITPLITDFMKENPDVRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +K ID+  +  D AIR+   +Q SSLI +K+ T      A+P ++       + +
Sbjct: 124 DIDLSDKRIDLIAEGFDLAIRIGA-LQDSSLIAKKISTARQVPCASPDFIAKHGALDNPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L+    + + +   +   D+ ++    +         L   +   +    + G G+  L
Sbjct: 183 ALNDMPGLIYAN--SRTPSDWTYVTPEGKAGTVHVSQRLSATNGDVLRDAAIAGLGVVNL 240

Query: 245 PDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           P ++     ++  LV +M D       ++  YP+      + +AF +F+      W+F
Sbjct: 241 PTFLLFEAINDGTLVPLMADHDWSELDIFAVYPKTTILPRRTRAFVDFMA-----WRF 293


>gi|330721628|gb|EGG99646.1| Transcriptional regulator2C LysR family2C in formaldehyde
           detoxification operon [gamma proteobacterium IMCC2047]
          Length = 294

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 148/297 (49%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ +  F  VA + SFT AA+QL +S + +SRQ+S LET +  KL +R  R +++TE 
Sbjct: 2   FNWEGVTEFVAVAETESFTAAAKQLDISTAQVSRQVSALETRLATKLLHRTTRKVSVTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++   ++   LE+ +  + +    P+GKL+I   +  G+  +   +  FL  YPD+
Sbjct: 62  GNIYYQRCRQILEDLESAEDAISDMQSHPTGKLKITAPVTYGEATIAPLVNNFLKRYPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++ L N   D+  D  D AIR    +  S+++ ++L +   +  A   YL+   +P  
Sbjct: 122 DVEVNLSNLKKDLIEDGFDIAIRQGN-LGDSTMMAKRLSSRTFYVCATSEYLERYGKPEK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L+KHN +       + M +F +     +         L+ NS   ++   +   GI 
Sbjct: 181 PADLEKHNCL-------QSMNEFWYFQVNGKARNIRLTGNLRSNSGHVLLDASLKSIGIV 233

Query: 243 LLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP DY+    ++ +L  I+E+   P   V+  YP+    + K++   +++  +  D
Sbjct: 234 QLPGDYVCPHVESGDLEVILEEYRAPDQGVWALYPQNRHLSSKVRLLLDYLAEELGD 290


>gi|254251562|ref|ZP_04944880.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124894171|gb|EAY68051.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 294

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 137/287 (47%), Gaps = 9/287 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S++ ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAVGKRIARLEARLNVRLFHRSTRSVTLTAEGTRFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  +++  + EL +S   P G+LR++        L+   L +F+  YP+I++ L   
Sbjct: 69  CRRVIAEIDAAERELTQSVEAPRGRLRVSLPT--IGTLMLPVLADFMTAYPEIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R L     H  A+P YL+    P +  +L +H
Sbjct: 127 DRLVDVVDEGFDAVLRTGRP-ADSRLSSRLLGHFRQHLVASPDYLERHGTPRTPADLARH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +    P   +   W     R    P +   +  N+  + + + + G GIA LP++ 
Sbjct: 186 RCLHY--RFPSSGKLEIWPLRASRSHAPPAVPVSMVSNNAETRLCFALRGLGIACLPEFF 243

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V+   D   L  +++D +     VY  +P     T +L+AF + +  
Sbjct: 244 VREPLDAGTLRTVLDDYVASRTPVYVLWPSGRHPTPRLRAFVDHMVE 290


>gi|238799160|ref|ZP_04642613.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           mollaretii ATCC 43969]
 gi|238717001|gb|EEQ08864.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           mollaretii ATCC 43969]
          Length = 300

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 148/298 (49%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V   GSF+ AAEQL  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVECGSFSRAAEQLEQANSVVSRTVKKLENKLGVMLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +  ++ T + E+ ++ + P G LRI  +  +  ++L   + EF   YP
Sbjct: 61  QEGEHYFRRVQNILREMATAENEILDNLLNPKGLLRIDASTPVVLHILAPLMAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  RKL+T + H  A+P YLK    P
Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRVG-TLQDSTLRARKLLTSYRHILASPTYLKQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H  + F DL    +  +    +  +P      S L  N+  +  + C+ G+G
Sbjct: 180 QTVADLRNHLCLGFNDL--PVLNRWPLAGSDGQPYEI--TSDLTSNNGETQRRLCLEGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++++ +    +L+ I+ +   P +  +   Y      + +L+ F +FI  + 
Sbjct: 236 IACLSDFMIQQDLQRGDLIPILVEQTLPVAMPINAVYYSDQAVSNRLRCFIDFINERL 293


>gi|152986793|ref|YP_001347649.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961951|gb|ABR83976.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 297

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 151/299 (50%), Gaps = 9/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  VA +GSFT AA+ L + ++++S  +  LE ++G +L +R  R + LT+
Sbjct: 1   MDRLDSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS +      +   +E  +   ++   + SG+L++     + + L+   L  F   +PD
Sbjct: 61  DGSAVLERCRHLLEDMEELEGLFRDG-SRASGRLKVDVPSRVARLLIAPALPAFFREHPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DCA+R+ + + +SSL+ R+L  + +   A+P YL     P 
Sbjct: 120 IELELGSSDRSVDLVQEGVDCALRVGQ-LGNSSLVARRLGEMALINCASPAYLAQHGVPQ 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++LD H  + +       +  + +     R +     S + VN+  S +  C+ G G+
Sbjct: 179 APEQLDGHWAVNYASPTSGRVLPWEYREG-GRSVTRVLRSRVTVNNAESYIACCLSGLGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
             +P Y V+++     L  ++      +  VY  YP     + ++KAF +++   L+AR
Sbjct: 238 IQIPAYDVREHIERGELREVLPQWRAEAMPVYALYPHRRHLSRRVKAFVDWLERLLRAR 296


>gi|146308050|ref|YP_001188515.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576251|gb|ABP85783.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 304

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 137/291 (47%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G F+ AAE+L LS S +SRQ++ LE  +  +LFYR  R + LTE G 
Sbjct: 4   WEGLDEFVAVAECGQFSAAAERLGLSTSQVSRQVARLEERLQSRLFYRSTRRVALTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + +   +P G LR+   +  G+  +   + +F+  +P +++
Sbjct: 64  LFLQHCQRLQDAREEALRAVGDLGAEPKGLLRMTCAVAYGERFIVPLVNDFMARHPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L N+ +D+  +  D AIRL + +Q S L+  +L    M+  AAP YL+    P S+ 
Sbjct: 124 EIELSNRQLDLLHEGLDLAIRLGR-LQDSRLMAARLAPREMYLCAAPEYLQRYGRPHSLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +           D        R          + NS  +++   + G G+  L
Sbjct: 183 ELARHNCLI-------GSSDHWSFVDNGRETQMRVQGNWRCNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V ++     LV +++    P+  V+  YP+    + K++   + +  
Sbjct: 236 PDYYVLEHLASGALVSLLQQHRPPNTAVWALYPQQRHLSPKVRQLVDHLKA 286


>gi|262403056|ref|ZP_06079616.1| transcriptional regulator LysR family [Vibrio sp. RC586]
 gi|297579977|ref|ZP_06941904.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|262350555|gb|EEY99688.1| transcriptional regulator LysR family [Vibrio sp. RC586]
 gi|297535623|gb|EFH74457.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 299

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN + +        +                      ++  ++ +  + G GIA +P
Sbjct: 183 LARHNCLQYAYQTTGATDWE--FKGAKGNYIVKVSGTFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV +  + +     +Y  YP   +   K++     I  +
Sbjct: 241 RCLVYHDFRNGELVDVFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRTR 291


>gi|304395346|ref|ZP_07377230.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304357599|gb|EFM21962.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 305

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT 
Sbjct: 1   MDRIQAMQIFIRVAEAGSFVRAAETLSLPSSTVTSTIKNLEKYLQVRLLNRTTRRVSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +      E+   +E T+  L +S+ +P G+LR+     +   ++  NLK+F  LYPD
Sbjct: 61  EGLQYLAQCREILALIEHTEASLADSNRRPRGRLRVDMPGGIAHFIVLPNLKDFYRLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + + ++ +D+  +  DC IR  + +  S+L+ R L        A+P YL+    P 
Sbjct: 121 IYLMIGVSDRQVDLVQEGVDCVIRTGE-LTDSTLVARPLGRFRWLTCASPDYLREYGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L +H  I +     +   +  ++   +     P      VN     ++ C+ G G+
Sbjct: 180 TPEALSQHRAIHYFSGSGRRTNELRFIRGAE-AFSVPVEGDTAVNETGLYIRLCLEGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L + ++        LV ++ D   PS  V   YP     +  ++AF +++
Sbjct: 239 AQLAENVISKNLQQGKLVEVLADWQPPSVPVTMLYPHQRFLSPAVRAFADWV 290


>gi|237816688|ref|ZP_04595680.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|260544363|ref|ZP_05820184.1| transcriptional regulator [Brucella abortus NCTC 8038]
 gi|237787501|gb|EEP61717.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|260097634|gb|EEW81508.1| transcriptional regulator [Brucella abortus NCTC 8038]
          Length = 325

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  V  +GS + AA  L LS + +S+++  LE  +G  L     R + LT
Sbjct: 20  MMSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTSLLQCTTRQIALT 79

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 80  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 139

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P
Sbjct: 140 DLTVNMQLSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTP 198

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI       LQ NS   + +  + G G
Sbjct: 199 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPTGPLQTNSSEIVREAVLAGLG 252

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 253 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 306


>gi|224823750|ref|ZP_03696859.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224604205|gb|EEG10379.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 318

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 137/299 (45%), Gaps = 8/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF   A +GSF+ AA +L +S ++IS+ I+ LE E+ ++LF R  R LTLTE
Sbjct: 1   MDTLKALMVFMTTAENGSFSDAARKLGVSPAAISQSIARLEQELEVRLFNRTTRQLTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +       + L+    +L+ S  +P+G LRI+     G++ +   + EF   +P 
Sbjct: 61  DGRRFYAQCRGPVNNLDAAINQLKASRDEPAGHLRISLPNSFGRHFILPLMGEFCQRHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++   LD+   D+  D  D  +R+   +  S L  R L  + ++  AAP Y      P 
Sbjct: 121 IRVFFGLDDHFSDLIEDGYDVGVRVGM-MPDSRLSARHLAQLPLYTVAAPEYWSKNGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
              +L  HN I +    P       W    D       ++ +  +N   ++ +   LG G
Sbjct: 180 KPDDLANHNCINY--QFPTSGRLCKWEFERDGERIPLEVNGIYTLNDIEAVCEMARLGFG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +A +P +       +  L  ++ D I+   ++Y C+P       + + F +++  K  +
Sbjct: 238 VAQVPGHEAMPYLRSGELEAVLTDFISLERSIYICFPHREHIAPRTRVFVDYVAEKLAE 296


>gi|325523613|gb|EGD01903.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 301

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAESSVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ EL +HN +    L     +   W    D  +   R+   ++ +    + ++C+ G G
Sbjct: 180 TLAELARHNCLA---LAANANQQRGWAFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V ++     LV +++    P   ++  +P+      +++ F +++
Sbjct: 237 LAWRSWWEVGEDIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDYL 289


>gi|317492732|ref|ZP_07951157.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919255|gb|EFV40589.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 302

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 140/292 (47%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA   SF+  AE+L L + S+S  I  LE + G +L +R  R +TLT+
Sbjct: 2   MDKISAMQVFVSVAELSSFSRTAERLGLPKGSVSGAIQQLENQFGTQLLHRTTRKVTLTQ 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +   ++  +   + SS   SG+LR+     L + ++Q +L EFL+ +P+
Sbjct: 62  DGHRCYERCKGLLADIDELESLFRTSSAPLSGRLRVDMPSGLAKIVIQQSLAEFLMAHPE 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L   ++ +D+  +  DC +R+   +Q S LI R L  + M   A+P YL+    P 
Sbjct: 122 LELELSSSDRRVDLIQEGFDCVVRVGA-LQDSGLIARPLGQLQMVNCASPAYLQKYGCPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H ++ + +      + F ++              L VNS  S    C+ G GI
Sbjct: 181 NATDLQSHQMVHYQNAQVGHSDRFEYVTAQGDVQQVEMQGALTVNSTESYSAACIAGLGI 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V+   D   LV I+  +  P+  V   YP       +++ F +++
Sbjct: 241 IQVPIIGVRHALDTGTLVAILPQLSPPAMPVSLLYPHRRNLARRVQVFMDWM 292


>gi|49085882|gb|AAT51312.1| PA2877 [synthetic construct]
          Length = 298

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 150/299 (50%), Gaps = 9/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  VA +GSFT AA+ L + ++++S  +  LE ++G +L +R  R + LT 
Sbjct: 1   MDRLDSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS +      +   +E  +    +   + SG+L++     + + L+   L EF   +PD
Sbjct: 61  DGSVVLERCRHLLEDMEELESLFHDG-SRASGRLKVDVPSRVARLLIAPALPEFFRQHPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+ + + +SSL+ R+L  + +   A+P YL+   EP 
Sbjct: 120 IELELGSSDRSVDLVQEGVDCVLRVGQ-LGNSSLVARRLGEMQLINCASPAYLEEHGEPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +LD+H  + +       +  + +     R +     S + VN+  S +  C+ G G+
Sbjct: 179 TPADLDRHWAVNYASPSSGRVLPWEYRED-GRTLTRALRSRVTVNNAESYIACCLSGLGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
             +P Y V+++     L  ++      +   Y  YP     + +++AF +++   L+AR
Sbjct: 238 IQIPAYDVREHLQRGELREVLPQWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLLRAR 296


>gi|258543481|ref|YP_003188914.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634559|dbj|BAI00535.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637617|dbj|BAI03586.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640669|dbj|BAI06631.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643726|dbj|BAI09681.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646781|dbj|BAI12729.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649834|dbj|BAI15775.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652822|dbj|BAI18756.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655878|dbj|BAI21805.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 305

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  V  +GSFT AA  + LS + +++ ++ LET +G+ LF+R  R L+LTE G    
Sbjct: 8   MQIFVKVIAAGSFTGAARLMALSPTMVTKHVTALETRLGVSLFHRSTRHLSLTEAGRLFL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E  +  + E   +P G+LR+   +      +   L EF   YP +QI+L 
Sbjct: 68  ESCQKILADVENMEQTVSEQYREPRGQLRLNAPVSFAIRYVAPYLSEFSRRYPQVQIELG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D  +R+R  +  S+L  RKL  + M   A+P YL     P  + EL 
Sbjct: 128 LNDRPVDLVEEGWDLTLRIRN-LTISTLRARKLAAVRMVICASPSYLAKAGTPTHVDELQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +   +        W    +          L  N+  ++ +  V G+GIA LP +
Sbjct: 187 HHNCLGY--TLSGNNSASRWHFGDNGEKTVSVSGLLCANNGDALREAAVAGAGIAYLPLF 244

Query: 248 IVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +V        L+ +  D   TP   ++  Y        K++A  +++  
Sbjct: 245 VVSQELQRGQLIALSLDYPTTPGPDLHAVYAPGTSIPLKVRAMIDYLAE 293


>gi|54302643|ref|YP_132636.1| LysR, transcriptional regulator [Photobacterium profundum SS9]
 gi|90412654|ref|ZP_01220656.1| hypothetical LysR, Transcriptional regulator [Photobacterium
           profundum 3TCK]
 gi|46916067|emb|CAG22836.1| hypothetical LysR, Transcriptional regulator [Photobacterium
           profundum SS9]
 gi|90326462|gb|EAS42874.1| hypothetical LysR, Transcriptional regulator [Photobacterium
           profundum 3TCK]
          Length = 308

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +   V    +FT AAE+L +S+S +S+QI  LE  +G +L  R  R + LT
Sbjct: 1   MLENLQQMVILATVGNEQNFTRAAERLGISKSQVSKQIRFLEERLGCQLVQRSTRTVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +      ++   +   +  +     +  G LR+      G + +   L EF   +P
Sbjct: 61  DIGLQYSEYGQQLVDTVNEAEAMVAGYRDEVKGVLRVGVAQSFGNSNITSALAEFQKAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++++ L +   ++  +  DC + + +      ++ R+L   +    A+P YL     P
Sbjct: 121 DLELEVSLFDHRPNLLEEGFDCWVAIHEH-PPEGMVARRLANCNFVVVASPEYLAEHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
               +L +HN IT+     K +   NW  T D      R     ++++  +++     G 
Sbjct: 180 QLPGDLRRHNCITYQSRERKYV---NWEFTRDGVHQSIRARGNYRIDNAPAVLDAATSGL 236

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIA L  Y++ D      LV+++ +        +Y  YP       K+++F +F+  +
Sbjct: 237 GIAYLSTYLITDELVNNKLVQLLPEWKADVELPIYAVYPRRKYLAPKVRSFIDFMAER 294


>gi|116050880|ref|YP_790297.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586101|gb|ABJ12116.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 297

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 151/299 (50%), Gaps = 9/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  VA +GSFT AA+ L + ++++S  +  LE ++G +L +R  R + LT 
Sbjct: 1   MDRLDSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS +      +   +E  +   ++   + SG+L++     + + L+   L EF   +PD
Sbjct: 61  DGSVVLERCRHLLEDMEELESLFRDG-SRASGRLKVDVPSRVARLLIAPALPEFFRQHPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+ + + +SSL+ R+L  + +   A+P YL+   EP 
Sbjct: 120 IELELGSSDRSVDLVQEGVDCVLRVGQ-LGNSSLVARRLGEMQLINCASPAYLEEHGEPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +LD+H  + +       +  + +     R +     S + VN+  S +  C+ G G+
Sbjct: 179 TPADLDRHWAVNYASPSSGRVLPWEYRED-GRTLTRALRSRVTVNNAESYIACCLSGLGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
             +P Y V+++     L  ++      +   Y  YP     + +++AF +++   L+AR
Sbjct: 238 IQIPAYDVREHLQRGELCEVLPHWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLLRAR 296


>gi|312797607|ref|YP_004030529.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312169382|emb|CBW76385.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 402

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 137/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S + ++R ++ LE+ +G +L  R  R L+LTE
Sbjct: 18  MDHLQSMRVFVKVADLGSFAKAASMMDMSNAVVTRHVADLESRLGTRLLNRTTRSLSLTE 77

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L  +   +P 
Sbjct: 78  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLHSYAQRFPQ 137

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++++D+  +  D  + + + ++S+S++ R+L T  +   A P Y+     P 
Sbjct: 138 VIPNVTLVDREVDMVEEGFDVGVVIARNVRSASVVMRRLTTGCITVCATPEYIAKHGVPQ 197

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H+ ++         ++  +     + +     + +  N+   + Q  +LG+GI
Sbjct: 198 RPEDLLEHHCLSLP--ADYWGDERVFTGPDGQEVRVRPTNVMIANNTEMLRQLALLGNGI 255

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ALLP Y++  +     L+R++     P   +   YP       K++ F + +  
Sbjct: 256 ALLPSYLIGRDMAEGRLLRLLPQYHLPRVDINIAYPSRHYLPAKVRTFIDHLVE 309


>gi|225686033|ref|YP_002734005.1| hypothetical protein BMEA_B0178 [Brucella melitensis ATCC 23457]
 gi|225642138|gb|ACO02051.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|326553651|gb|ADZ88290.1| transcriptional regulator [Brucella melitensis M5-90]
          Length = 306

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 126/294 (42%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LT
Sbjct: 1   MMSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 61  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     A P YLK    P
Sbjct: 121 DLTVNMQLSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVATPRYLKERGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI       LQ NS   + +  + G G
Sbjct: 180 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPTGPLQTNSSEIVREAVLAGLG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 234 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|194291232|ref|YP_002007139.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193225067|emb|CAQ71078.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 313

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 134/295 (45%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GSF  AA+QL +S + ++R ++ LE+ +G +L  R  R L+LT+
Sbjct: 1   MDRLQSMRVFSKVVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++   +E  +  +   S   SG LR+ T +  G +LL   L  F  LYPD
Sbjct: 61  AGETYLQRCQQILEDVEEAESVVTARSQSLSGTLRLVTPVMFGLHLLPELLSRFQQLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   +IL ++++DI  +  D A+ L      S L+ R L++  +   A+P Y+       
Sbjct: 121 VVFDVILSDRNVDIVEEGRDVAVMLSDLGLGSHLVARPLLSAEVILCASPGYVAAHAPIR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  H  I     +P    ++  L   +  +  P    L  ++     Q  +   G+
Sbjct: 181 HAHELSHHRCIAM--RLPNAEHEWT-LLGPEGEVTVPIRPGLLCSNAELAHQAALADMGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+L  Y+ +   D   LVR++     P   V   YP       K++AF +F+  +
Sbjct: 238 AMLSSYLARPNIDAGRLVRVLPQYQLPRRDVSVVYPSRKFLPTKVRAFIDFLLEE 292


>gi|134296059|ref|YP_001119794.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139216|gb|ABO54959.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 301

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ EL +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G
Sbjct: 180 TLAELARHNCLA---LAANANQQRGWTFQEDGKVVSIRVSGTMECSDGAVLHEWCLAGYG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V D+     LV +++    P   ++  +P+      +++ F +++
Sbjct: 237 LAWRSWWEVGDDVAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDYL 289


>gi|117621467|ref|YP_856626.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562874|gb|ABK39822.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 317

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 133/292 (45%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R+F  VA   SFT +AEQL + ++++S  I  LE ++G +L +R  R + LT 
Sbjct: 1   MDQLDAMRMFVRVAELESFTRSAEQLGVPKATLSATIRRLEEQMGTRLLHRTTRRVQLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   +E      ++   + SG+LR+     + ++L+   L  +L  +PD
Sbjct: 61  DGKLCYARCQDLLADMEEFNALFRQQ-GQLSGQLRVDMPSRMARHLVIPALPAWLAAHPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ +D+  +  DC IR+   ++SSSL+ R L        A+  YL     P 
Sbjct: 120 LQLLLSSTDRRVDLVREGFDCVIRVGA-LESSSLVARPLGHYRQINCASAGYLARHGTPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ EL  H L+ +G         F +L              L VN   S +   + G GI
Sbjct: 179 SLSELSDHRLVHYGGGSGPRESGFEYLQADGSRAVLAMSGALTVNDSESYLAAALAGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP   V+    +  LV I+     P   ++  Y    +   +++AF  ++
Sbjct: 239 IQLPRVGVEPLLASGELVAILPKWQAPPLPIHALYAHRRQLAPRVQAFIQWL 290


>gi|118590278|ref|ZP_01547681.1| LysR family transcriptional regulatory protein [Stappia aggregata
           IAM 12614]
 gi|118437250|gb|EAV43888.1| LysR family transcriptional regulatory protein [Stappia aggregata
           IAM 12614]
          Length = 342

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 6/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F    + GSF+ AA+ L +SQ ++S+Q+  LE E+GI+L  R  R L+LTE G 
Sbjct: 19  LSSLSGFVQAVKFGSFSAAAKHLGISQPAVSQQVRALEDELGIRLLNRTTRQLSLTEAGE 78

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++  +L      +Q    + SG L +   +   + +L   L  F L +P I +
Sbjct: 79  RYYAYARDILERLAEADRSVQSEEAQMSGPLSVGLPLGFAETVLSDFLIRFKLDHPGILL 138

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+     D AIR+   I+   LI R+L        A+P YL     P    
Sbjct: 139 DVSLSDQFVDVIQQRLDVAIRMGD-IEDDRLIVRRLGLAQRCLVASPDYLDKRGRPAHPD 197

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + + ++       F  ++ V   +       + VN+  ++ +  + G GIAL 
Sbjct: 198 DLKDHDYLLYKNISTGTRVPF--ISPVGEKLSVKISPTMLVNNSSTLRRAAMAGLGIALS 255

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +++       +L  ++     P   V+  YP       K++ F + +F
Sbjct: 256 NRWLIDPFLRTGDLEVVLPQWQYPPHPVHAVYPSNRFIPLKVRRFVDSLF 305


>gi|330985973|gb|EGH84076.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 301

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    EV   +  ++   +++   PSG LRI   +  G  +L   L  F L +P
Sbjct: 60  EFGTAYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+L N+ +D+  +  D AIRL    QSS LI R +    +   AAP YL     P
Sbjct: 120 EVKLDLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARPMQDYTLTICAAPSYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
              ++L  HN + F                +  P GE  +     +  N+   + Q    
Sbjct: 180 AHPEDLGAHNCLAFSYPAGDEWRTAGTQWRMTGPEGEVLVDVDGSMVANTSAGLYQAACA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     LV ++     P   +   Y +      K+++F  +
Sbjct: 240 GMGVVMLPDALVQRDLQEGRLVALLPGYHLPRRPMNLLYVQDRYRLPKVRSFVEY 294


>gi|297539930|ref|YP_003675699.1| LysR family transcriptional regulator [Methylotenera sp. 301]
 gi|297259277|gb|ADI31122.1| transcriptional regulator, LysR family [Methylotenera sp. 301]
          Length = 299

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 136/292 (46%), Gaps = 9/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D ++ F  VA  GSFT AA+ L L ++S+S  +  LE  +G +L +R  R + LT  G
Sbjct: 3   NTDAIKRFVRVAELGSFTKAADALGLPKASVSLAVQQLENRLGTQLLHRTTRKVQLTPDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    +V  +++      Q       G +R+  +  +  N++   L EFL  YP++Q
Sbjct: 63  QIFYERGKDVLAEMDELDSLFQTDDASIRGLIRVDMSYPMAHNIVIPRLPEFLSRYPNLQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ +D+  +  DC IR  K +Q S LI R L  +    YA+P YL    EPL +
Sbjct: 123 VDLSSTDRQVDLIAEGFDCVIRTGK-LQDSGLIVRNLGVLTQTNYASPAYLAQHGEPLRL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H LI +        + F  W     + I  P  S L VN+       C+ G GI 
Sbjct: 182 EDLSNHWLIHYCVNAATKFDMFEYWDGQACQRISMP--SRLSVNNADGYQAACLAGLGII 239

Query: 243 LLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P      +V +   LV I++    P+  V   YP     + +++ F +++
Sbjct: 240 QAPLIGGAKLVAE-GKLVEILKKFGAPAMPVSLVYPHRRNLSKRVRIFMDWL 290


>gi|91787738|ref|YP_548690.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91696963|gb|ABE43792.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 300

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 142/304 (46%), Gaps = 12/304 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V ++GSF  AAE+L  S++++SR +  LE  +  +L  R  R  +LTE
Sbjct: 1   MDQLRQIETFVAVVQNGSFVKAAEKLGDSKAAVSRLVLELEARLDTRLLNRTTRKQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+       ++   L    +    S+ +P G+LRI   +  G   L      FL  +PD
Sbjct: 61  SGADYFERCRKILDDLAEANLAASASTARPVGRLRINAPVSFGNLHLAPLWGGFLQRHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + L ++ +D+  D  D AIR+ + + +SSLI R+L +  +   A+P YLK  R+  
Sbjct: 121 VTLDVTLSDRQVDLVEDGYDLAIRIAR-LLNSSLISRQLASTRLVLCASPAYLKLKRQAR 179

Query: 182 --SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +I+++  H +I +          F      + P+     + L+ NS  + +   + G 
Sbjct: 180 LSTIEDIAAHPVIAYSYWSGGDSWAFE---GPEGPVEVLTQARLRSNSGDTCLAAALAGQ 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR- 295
           G+ L P +IV  +     LV ++     P+  ++  YP     + K++    ++    + 
Sbjct: 237 GLILQPTFIVGADLKAGRLVEVLPHYRAPTLAIHAVYPSRQHLSVKVRRMVEYLAGAFKK 296

Query: 296 -DWK 298
            DW+
Sbjct: 297 PDWE 300


>gi|254440317|ref|ZP_05053811.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198255763|gb|EDY80077.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 309

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 107/289 (37%), Positives = 168/289 (58%), Gaps = 4/289 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+ VA +GS THA + LHLSQS++SRQI  LE  +   LF+RHARGL LTE
Sbjct: 6   PMDWDKLRIFHAVADAGSLTHAGDTLHLSQSAVSRQIRALEESLSTILFHRHARGLILTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L   T  +  +L+     +++S+ +  G+L++ TT   G   L   L      YPD
Sbjct: 66  QGELLFDATKSMSRRLDAASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPD 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L+L+ + +D+ M  AD AIR+++P Q+  LI++KL+T+ M  YA+  YL       
Sbjct: 126 LNIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKKLMTVRMRLYASQTYLDKVGGFA 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I+++ +H LI      P   +       V   +   + + L VN+Y  ++Q  +   GI
Sbjct: 185 EIEDIGRHRLIC---QSPNAFQVAAGATLVGHLLSYDKPNLLNVNNYFGVLQAVLSDLGI 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPDY+ +D P+LVR++ +V +    V+  YPE L+ + ++ AFR+F+
Sbjct: 242 GVLPDYVTEDFPDLVRVLPEVESGEVPVFLAYPEELRQSKRIMAFRDFV 290


>gi|33598053|ref|NP_885696.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33602945|ref|NP_890505.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33568576|emb|CAE34334.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33574482|emb|CAE38820.1| LysR family transcriptional regulator [Bordetella parapertussis]
          Length = 297

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 139/287 (48%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF  AA++   ++S ++RQ++ LE + G++L  R  R L+LT+ G   +
Sbjct: 1   MQTFARVVELGSFAAAADKTDQARSVVTRQVAFLERKYGVRLLNRTTRKLSLTDAGRAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +L    + LQ    +P+G+LRI+  +  G   L   + ++LL YP++ I L 
Sbjct: 61  DRIRPVLAELAELDLALQAQGSQPAGRLRISAPVSFGVLHLGPAIADYLLRYPEVVIDLD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D A+R+  P+  SSL+ R L    + A AAP YL+    P   ++L 
Sbjct: 121 LNDRVVDLVEEGYDVAVRIG-PLVDSSLVARPLAPQQLVACAAPAYLERYGAPAQPEDLR 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +           +W    D      R+ +  + N+   +    + G GI L P+
Sbjct: 180 RHRCLHYAYASTGN----DWHFEKDGQTHVVRVNATFRANNGDVLRTAALAGHGIILQPE 235

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V ++     L  ++ D      T+   YP     + K+++F   +
Sbjct: 236 FLVGEDLRAGRLTALLTDYRHSLITMMAVYPHRRFLSPKVRSFVEHL 282


>gi|254251077|ref|ZP_04944395.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124893686|gb|EAY67566.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 349

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLAEHPALSLPT---EYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|167625200|ref|YP_001675494.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167355222|gb|ABZ77835.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 303

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 144/297 (48%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +D + +F  V +SG F+ AAE L  S S +S++++ LE  +G++L  R  R + LT
Sbjct: 7   MNKLFDGIVIFAQVVKSGGFSAAAEVLGHSTSYVSKEVNKLEERLGVRLLNRTTRSIGLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++   ++    E+    + ++ V P G LR++  +   QN L+  + ++L LYP
Sbjct: 67  PEGDAYYQQCLQLIIDAESAVGLITQNDVSPRGVLRLSCPVGFAQNHLKPIISQYLQLYP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L L +   D+  D  D AIR    ++ SSLI RK+ +   +  A+  Y+    +P
Sbjct: 127 NVSLDLDLSDNRTDVVADGYDLAIRASAQLEESSLICRKIYSCKAYTVASKEYISRHGKP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL+ HN I + +   K    ++++    +         +  N+    +   + G G
Sbjct: 187 HHPRELETHNGICYSN--HKQPSRWDYIDHDGKHFVVDIRQKILCNNGHMQLSMALAGHG 244

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  LP + ++   ++  L  + E+  +    V+  YP     + K++AF +    + 
Sbjct: 245 ITRLPSFYLQGALESDQLEILFENFPSADIDVFVVYPSRKHLSPKVRAFIDLAAERL 301


>gi|261213016|ref|ZP_05927300.1| transcriptional regulator LysR family [Vibrio sp. RC341]
 gi|260838081|gb|EEX64758.1| transcriptional regulator LysR family [Vibrio sp. RC341]
          Length = 299

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN + +        +                      ++  ++ +  + G GIA +P
Sbjct: 183 LARHNCLQYAYQTTGATDWE--FKGAKGNYIVKVSGTFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV I  + +     +Y  YP   +   K++     I  +
Sbjct: 241 RCLVYHDFRNGELVDIFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRAR 291


>gi|238794450|ref|ZP_04638060.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           intermedia ATCC 29909]
 gi|238726245|gb|EEQ17789.1| Uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           intermedia ATCC 29909]
          Length = 300

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 146/298 (48%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L  F  V   GSF+ AAEQL  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKAHSDELITFVTVVECGSFSRAAEQLDQANSVVSRTVKKLEGKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    +  ++ T + E+ ++ + P G LRI  +  +  ++L   + EF   YP
Sbjct: 61  QEGEHYFRRVQNILREMATAENEILDNQLNPKGLLRIDASTPVVLHILAPLMAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     I++     D AIR+   +Q S+L  RKL+T + H  A+P YL+    P
Sbjct: 121 LVTLSLVSSETFINLIERKVDIAIRVG-TLQDSTLRARKLMTSYRHILASPAYLEQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H  + F DL          LA  D  + E   S L  N+  +  + C+ G+G
Sbjct: 180 QTVADLQHHLCLGFNDLPVLNRWP---LAGADGQLYEIN-SDLTSNNGETQRRLCLEGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++++ +    +LV ++ +   P    +   Y      + +L+ F +FI  + 
Sbjct: 236 IACLSDFMIRRDLQRGDLVPLLVEHTLPVVMPINAVYYSDQAVSNRLRCFIDFINERL 293


>gi|254441903|ref|ZP_05055395.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198250680|gb|EDY74996.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 309

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 104/289 (35%), Positives = 165/289 (57%), Gaps = 4/289 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWDKLR+F+ VA +GS T A + LHLSQS++SRQI  LE  +   LF+RHARGL LTE
Sbjct: 6   PMDWDKLRIFHAVADAGSLTAAGDTLHLSQSAVSRQIRALEESLSTILFHRHARGLILTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L   T  +  +L+     +++S+ +  G+L++ TT   G   L   L      YPD
Sbjct: 66  QGELLFDATKSMSRRLDAASARIKDSAEEVFGELKVTTTTGFGTLWLAPRLPALYEKYPD 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L+L+ + +D+ M  AD AIR+++P Q+  LI++KL+T+ M  YA   YL       
Sbjct: 126 LNIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKKLMTVRMRLYATQTYLDKIGGFD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++++ +H LI      P   +       V   +   + + L VN+Y  ++Q  +   GI
Sbjct: 185 EMEDIGRHRLIC---QSPSAFQVAAGATLVGHLLSYDKPNLLYVNNYFGVLQAVLSNLGI 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPDY+ +D P LVR++ ++ +    VY  +PE L+ + ++ AFR+F+
Sbjct: 242 GVLPDYVTEDFPTLVRVLPEIESGEVPVYLAFPEELRQSKRITAFRDFV 290


>gi|71280508|ref|YP_268408.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71146248|gb|AAZ26721.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 295

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 144/297 (48%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     +  F  V  +GSFT AAE+L LS+S +S+Q+S LE E+G +L YR  R L+L+
Sbjct: 1   MNI-LTLMETFSAVVEAGSFTGAAEKLGLSKSFVSKQVSTLEVELGCRLLYRTTRTLSLS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++GS+ +     +  + E  + E+ +    P GK+R+     L  +     L +F L YP
Sbjct: 60  DEGSQFYNHCKIIMAEAENARAEVMDRQGAPRGKIRMTIPQSLIISGFGQLLIDFQLQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++++I   +  D+  +  D A+R+ + ++ SSLI R+L+       A+  Y+K   EP
Sbjct: 120 EIKLEVIASGRIEDLVKEGIDIALRVGQ-LEDSSLISRRLMDCTFQVVASSDYIKKWGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN + +GD   K  + + + +     I          N    +++  + G G
Sbjct: 179 FQPADLMQHNCLIYGD--SKINKGWPFRSPSGESITVKAKGNFISNDGGLVVEGMLNGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   P ++  ++     L  ++ D   P   +   YP     + +++   +++  + 
Sbjct: 237 IGFGPSFLFNEHVEKGRLKLLLSDYYQPPTAISALYPLNRNLSRRIRLLIDYLSERL 293


>gi|127512468|ref|YP_001093665.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126637763|gb|ABO23406.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 289

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 138/290 (47%), Gaps = 11/290 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ +  F  VA + SFT A ++L +S + +SRQ+  LE  +  KL YR  R +++TE+G
Sbjct: 3   EWEGVSEFVAVAETESFTKAGKRLGISTAQVSRQVGALEQRLDTKLLYRTTRKVSMTEEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R   +V   LE  +  L      P G LR+   +  G+  +   + +FLL YP+++
Sbjct: 63  HLYYRHCRQVLDGLEEAERALSSLRGLPQGLLRMTAPVAYGEKYILPVVNDFLLAYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L N+ + +     D AIR+ K +  SSLI +++     +  A+P YLK   EP S+
Sbjct: 123 VDIALTNRQVRLVDAGIDLAIRIGK-LADSSLIAKRISQRINYVCASPDYLKRFGEPHSL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +HN +           D+       R         L+ N+   +    + G G+  
Sbjct: 182 SELSRHNCLI-------GNHDYWRFLEQGRERQLKIKGNLRCNTGHGLRDAALKGLGLVQ 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+Y +  +     LV ++     P+  V+  YP+    + K+K    F+
Sbjct: 235 LPNYYIGQDLKAGRLVSVLNAYQEPNEGVWALYPQNRHLSPKVKLMVEFL 284


>gi|322833079|ref|YP_004213106.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321168280|gb|ADW73979.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 298

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 139/296 (46%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LR+F  V ++GSFT AAEQL LS+  +SR+++ LE  +  +L  R+ R L++TE 
Sbjct: 1   MQTEDLRIFIAVVKAGSFTTAAEQLMLSKQYVSRRMASLEAGLHARLLNRNTRKLSVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +    +   +E  +  +        G  RI+  +  G + L   + EFL  +P I
Sbjct: 61  GQLFAQHAQRILDDIEEAERAVSPRRQALQGTYRISIPMSFGISHLSPLIAEFLGQHPAI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q Q+ L ++ +D+  +  D A+R+   +  SSL+ R+L  +      +P YL+    P  
Sbjct: 121 QFQVELVDRYVDLVGEGFDIALRIGN-LADSSLVARRLGELKRVICCSPEYLQRKGTPEM 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H+ + +G       E    L    +         +  N+   +    V G G+ 
Sbjct: 180 PEDLLNHHCLRYGREGQTGWE----LELEGKRRLFDVRGPIVSNNGEVLRDAAVAGLGLV 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LLP++IV        LVR+++     + +++  YP+  + +   + F +F+  + +
Sbjct: 236 LLPEFIVGPALQYGALVRVLDAFHPGALSLHAIYPQHRQRSEVTRVFLDFLQERLK 291


>gi|293392721|ref|ZP_06637040.1| contact-regulated protein A [Serratia odorifera DSM 4582]
 gi|291424838|gb|EFE98048.1| contact-regulated protein A [Serratia odorifera DSM 4582]
          Length = 298

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/298 (29%), Positives = 146/298 (48%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V  SGSF+ AAE+L  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVESGSFSRAAERLEQANSVVSRTVKKLENKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R   +V + +   +  L ES  +P G LR+        ++L     EF  LYP
Sbjct: 61  QEGENYFRQVQKVLNDMAAAENALMESRQRPQGLLRVDAATPFVLHVLAPMAAEFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR+ + +  SSL  RKL+T +    A+P YL+    P
Sbjct: 121 EMSLSLVSSETFINLIERKVDIAIRIGE-LTDSSLKARKLMTSYRQVLASPAYLRQYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +H  I F DL          LA  D    E     L  NS  +    C+ G+G
Sbjct: 180 QTVEELAQHCCIGFNDLPALNRWP---LACADGRQWEA-TPALTSNSGETHRHLCLHGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D+++ ++    +LV I++    P +  +   Y      + +L++F +F+  + 
Sbjct: 236 IACLSDFMIGEDVKRGDLVPILQQHTLPLAMPINAVYYSDSAVSNRLRSFIDFVSERL 293


>gi|224825984|ref|ZP_03699087.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224601621|gb|EEG07801.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 295

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 137/297 (46%), Gaps = 13/297 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF+ VA  GSFT A+++L LS+   S+ +S LE  +G +L  R  R L LTE G+  
Sbjct: 3   AMRVFHAVADGGSFTLASDKLGLSRGMASKYVSWLEEHLGTRLLNRTTRRLALTESGADY 62

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +  +++  + +  E+S +P G LR++  +  G   L   L EF   YP + + L
Sbjct: 63  LARVASILAQVDEAEAQAAETSREPVGTLRVSAPLAFGVRRLGPILAEFNAHYPRLTVDL 122

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L+++  D+  D  D  +R+   +  S L+ R L  + +   AAP YL     P +  EL
Sbjct: 123 LLEDRQRDMLEDGVDLTLRITTDLGQSQLVARALAPVRVVVCAAPAYLARHGTPATPAEL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  + +    P       W    +R         L  N+   ++     G GI   P 
Sbjct: 183 ARHRCLRYTLSEPVD----EWRFGSER---VKVSGPLAANNGDLLVDAARHGMGIICEPT 235

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
           +++ D+     LV ++E    P F +Y  YP       K++A  +F+   F    DW
Sbjct: 236 FLLGDDLKSGRLVPLLEGYPLPEFRLYALYPHRQYLPRKVRALVDFLADHFAGEPDW 292


>gi|78067453|ref|YP_370222.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968198|gb|ABB09578.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 324

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 142/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT+
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++       Q  + KPSG LR+     LG+ ++  +L  F   YPD
Sbjct: 61  EGAAYYEHCMKIISEIAEADASFQTGNRKPSGVLRVHMPSSLGRRIVLPSLSIFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP 
Sbjct: 121 ITLELGLSDRYVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLKRVTCASPDYLARHGEPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I +L +H+ + +            W+  +D    E R+   + VN   + +   + G G
Sbjct: 180 EIADLAEHHAVNYRS--SHGARAIPWVFMIDGKPFEVRMNGGVTVNDSDAYVTCGLEGFG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V +   + +LV ++ D       +   YP     + K++ F ++I  
Sbjct: 238 MIQPTLFMVLENLLDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWIAE 292


>gi|126463346|ref|YP_001044460.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105010|gb|ABN77688.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 301

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 140/295 (47%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F +V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFAMVVDQGGFTDAARKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V          +      PSG LR++   D G  LL   L EFLL YPD
Sbjct: 61  IGLAYYDRARRVLTDAGEADALVTSMQTAPSGHLRLSVAADFGVALLTPILAEFLLDYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D AIR+   ++ SSL  RKL        A+P YL+    P+
Sbjct: 121 ITVTMVLNNRSVELISEGFDMAIRVGD-LEDSSLRARKLTETTRRMIASPGYLQRHGRPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L  H L+         +  +  L+    P        L VN   S+++  V G GI
Sbjct: 180 KIDDLTDHRLLYHSTQAHGNV--WRLLSPSGEPRQVRAPGFLTVNDGHSLLKAAVSGLGI 237

Query: 242 ALLPDYIVKDNPN--LV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP+++  +     LV  ++ D+   +  ++  YP       K++AF +F+  +
Sbjct: 238 AHLPEFLFAEAMRAGLVEEVLPDLPVETLGIHAIYPAGRFTQPKVRAFIDFLVRR 292


>gi|325129513|gb|EGC52340.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis OX99.30304]
 gi|325135636|gb|EGC58253.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M0579]
 gi|325201503|gb|ADY96957.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M01-240149]
 gi|325207483|gb|ADZ02935.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis NZ-05/33]
          Length = 299

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSAEELAGHQCLGFTE--PGSLNTWAVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++V ++     L+ ++ +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IACLSDFLVDNDIAEGKLIPLLAEQTSNKTHPFNAVYYSDKAVNLRLRVFLDFLVEEL 293


>gi|171317480|ref|ZP_02906671.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097376|gb|EDT42220.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 323

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++       Q  + KPSG LR+     LG+ ++   L  F   YPD
Sbjct: 61  EGAAYYEHCMKIISEIAEADASFQSGNRKPSGVLRVHMPSSLGRRVVLPALSIFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP 
Sbjct: 121 ITLDLGLSDRYVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLKRVTCASPDYLARHGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I +L  H+ + F            W+  +D    E R+   + VN   + +   + G G
Sbjct: 180 QIADLVDHHAVNF--RASHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     + +LV ++ D       +   YP     + K++ F +++  
Sbjct: 238 LIQPTLFMVLPNLRDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWLAE 292


>gi|254000391|ref|YP_003052454.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253987070|gb|ACT51927.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 301

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 145/296 (48%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + +F  VA+  SF+ AA +L +S+S++S+ ++ LET +G +L  R  R L+LT
Sbjct: 1   MH-DLNLMAIFAHVAQEQSFSTAARKLGMSRSAVSKAVAKLETALGARLLNRSTRHLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+ +    + +  + E     ++  + KPSG LR+A ++  G   +   + +FL  YP
Sbjct: 60  EVGAGMLEHCARIVTESERASQVVENLNSKPSGTLRVAASVAFGTLHVAPAMADFLQQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ + + ++ ID++ +  D  I++ +    S+L+ RKL  +       P Y +    P
Sbjct: 120 EVELDMTITDRAIDMAEEGYDVIIKVAQE-PPSALVARKLAPVRRQVCGTPAYFRQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S   L  HN + +     K    F+     +  I  P    +++N   ++ Q  + G G
Sbjct: 179 TSPMALTAHNCLDYIHSGDKGYWRFS---GPEGEIAVPVSGRVRINDDEALSQVVLGGFG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +ALLP +IV     + +L  ++ D I     VY  Y        K + F +F+  +
Sbjct: 236 LALLPTFIVGNHLQSGHLQSVLSDYIPVEQHVYAMYLPNRFLPLKARTFIDFLLER 291


>gi|293607231|ref|ZP_06689572.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292814323|gb|EFF73463.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 301

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 133/289 (46%), Gaps = 8/289 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L++   +AR+G  + AA QL ++ +++S++++ +E  +G++LF R  R L+LT +G   
Sbjct: 6   ELQLVVELARAGGMSAAARQLDVTPAAVSKRLAQIEARLGVRLFNRSTRRLSLTAEGEDY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  ++E     +      P G+L++   +  G++ +   + EF   YPD+ +QL
Sbjct: 66  LESARRILAEIEDLDQRIASRQDSPRGRLKVNAPLGFGRSYIAPAIAEFSQQYPDVMLQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D   D  D A+R    +  + LI RK+        A+P YLK    P++  +L
Sbjct: 126 QLTDSPADFVQDAFDVAVRFGD-LPDTRLIARKIAPNRRLVCASPGYLKTHGVPVTPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  I              W  T  R     ++   L  N     + + + G GI    
Sbjct: 185 TRHQCIVLRQNEDAYSL---WRFTRGRRSETVKVRGALSSNDGEVTLTWGLAGLGILQRA 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++ +     +  LVR++ED   P   +Y  +PE    + K++ F +F+ 
Sbjct: 242 EWDLARYLRSGRLVRVLEDYALPQADIYAVFPERHHLSAKVRVFVDFLV 290


>gi|218767562|ref|YP_002342074.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis Z2491]
 gi|121051570|emb|CAM07868.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis Z2491]
          Length = 299

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEELAGHQCLGFTE--PGSLNTWAVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++V ++     L+ ++ +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IACLSDFLVDNDIAEGKLIPLLAEQTSNKTHPFNAVYYSDKAVNLRLRVFLDFLVEEL 293


>gi|170733405|ref|YP_001765352.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169816647|gb|ACA91230.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 301

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ EL +HN +    L     +   W    D  +   R+   ++ +    + ++C+ G G
Sbjct: 180 TLAELARHNCLA---LAANANQQRGWSFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V D+     LV +++    P   ++  +P+      +++ F +++
Sbjct: 237 LAWRSWWEVGDDIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDYL 289


>gi|323525546|ref|YP_004227699.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382548|gb|ADX54639.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 309

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D      VF  V   G F  AAE L  S ++++R ++ LE  +G +L  R +R L+LTE
Sbjct: 1   MDRLRAYEVFVTVVSRGGFARAAEMLGTSPANVTRYVNELEAHLGTRLLNRTSRTLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   +  T+  +  +SV+P G+LRI   +  G   L     EF+  YP 
Sbjct: 61  GGETLYARCKSILDDVAETEGLVSSASVEPRGRLRINAPVSFGILHLAPLWPEFMRKYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L ++ +DI  +  D AIR+ +   ++    RKL T      A+P YL     P 
Sbjct: 121 IELDVGLIDRVVDIVDEGYDLAIRISRAGATNH-AARKLATSQNILCASPAYLARAGIPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I +        +++  +    +         +  N+  +     + G G+
Sbjct: 180 APADLLGHRCIGY--TYAATGDEWQLIDRGGKTHAIKVDCHMHTNNGDTARAAALAGHGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              P +++ ++     LV ++ D   P   +   YP     + +++   +F+ 
Sbjct: 238 IWQPTFLIGNDLRAGTLVHVLPDYRLPEIDILALYPSRRHLSARVRVMIDFLV 290


>gi|92113112|ref|YP_573040.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796202|gb|ABE58341.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 300

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 136/291 (46%), Gaps = 13/291 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD++  F  VAR G+F+ AA  L +S S +SR I  L++++G  L YR  R   LT+ G+
Sbjct: 4   WDRIEAFIEVARLGTFSAAARHLQVSTSHVSRLIGQLKSQLGTTLLYRTTRQTRLTDAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    ++      +  + +   +P G LR+      G+  +   + +F   +P ++I
Sbjct: 64  LYYRHCRHLFDGFREAEEAIVDFQSRPKGTLRLTCATTFGERYIAPLVNDFQCRHPQLEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   N+ +++  +  D AIR+   ++ SSLI R+L     +   +P Y +    P S+ 
Sbjct: 124 DMHFTNRRVELVEEGFDVAIRMG-VLRDSSLIARRLCERREYVVGSPAYFERAAPPHSLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL  HN +             +WL  ++    E R+    + NS  +++   + G G+A 
Sbjct: 183 ELPHHNCL--------RGSRDSWLFEINGHRREVRVDGRWRANSGPALLDAVLKGLGLAQ 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           LPDY V  +     LV ++         V+  YP     + K++ F +F+ 
Sbjct: 235 LPDYYVTPHLARGELVPVLTAYQFTDTAVWAIYPRHRHLSPKVRQFVDFLV 285


>gi|27363815|ref|NP_759343.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27359932|gb|AAO08870.1| Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 294

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+ +  F  VA SGSFT AA +L  S +++SR++  LE  +G+KL  R  R ++LTE
Sbjct: 3   NIHWEGVNEFVAVAESGSFTQAATRLETSVANVSRRVGQLEERLGVKLLLRSTRKVSLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +    +   L   ++ + +    P GKLRI   +  G+  +   L +FL+ YP 
Sbjct: 63  AGQIYVQHCRSILEGLHQAELAVTQMQQTPQGKLRITAPVTYGEQKIAPLLNDFLIRYPK 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L N+ +D+     D A+RL + ++ SS + R+L   H+H  A P Y +    P 
Sbjct: 123 IDLELVLTNQKLDLIEQGVDIAVRLGQ-LEDSSSMARRLSDRHLHVCATPEYFEQHGMPH 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  HN +           D        +         ++ +S + ++   + G G+
Sbjct: 182 TLSDLSSHNCLI-------GTHDHWRFKENHQGRSIKVNGRIRCSSGVVLLDAALKGIGL 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V ++     L+ ++         V+  YP     + K++   + +
Sbjct: 235 VQLPDYYVDEHLHAGRLIEVLAHFRDDREGVWALYPHNRHLSPKVRLLVDHL 286


>gi|291619366|ref|YP_003522108.1| YhjC [Pantoea ananatis LMG 20103]
 gi|291154396|gb|ADD78980.1| YhjC [Pantoea ananatis LMG 20103]
 gi|327395689|dbj|BAK13111.1| putative HTH-type transcriptional regulator YhjC [Pantoea ananatis
           AJ13355]
          Length = 299

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 141/299 (47%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  GSFT AAE L L + S+SRQI  LE ++G +L +R  R + LT+
Sbjct: 1   MDKIHAMQVFVRVAEMGSFTAAAESLGLPKGSVSRQIQALENQMGTRLLHRTTRRVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   +       Q      SGKLR+  +  +  +L+   L EFL  YP 
Sbjct: 61  DGLVYYDRCLDLLSMISDMDSLFQHDPATLSGKLRVDMSAAMATDLILPRLPEFLQHYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L  +++ +D+  +  DC IR+ + ++ S LI R++ T  +   A+P YL     P+
Sbjct: 121 VEIELSSNDRQVDVIREGFDCVIRVGE-LKDSGLIARRIGTHTLINCASPGYLSRFGRPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL +H ++ +   + +  + F +               + VNS  +    C+ G GI
Sbjct: 180 RLEELSQHAMVHYSQQLGQPAQGFEFFDGKQCHYVHTG-GVVTVNSTETYRAACLAGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   +    ++  LV ++         ++  YP       +++ F  ++    +++
Sbjct: 239 IQVPTVGIHKYLESGELVEVLHAFPAKPMPIHLLYPHRRNVARRVRVFMEWLSQVLQEY 297


>gi|71066227|ref|YP_264954.1| LysR family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039212|gb|AAZ19520.1| transcriptional regulator, LysR family [Psychrobacter arcticus
           273-4]
          Length = 288

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 136/293 (46%), Gaps = 11/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             WD +  F  VA   SFT AA +L +S + +SRQ++ LE  +  KL YR  R ++LTE+
Sbjct: 1   MKWDGISEFVYVAELESFTKAAAKLAISTAQVSRQVTALEERLNTKLLYRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +   L+  +  +     KP G++ +   +  G+  L   + +F++ Y DI
Sbjct: 61  GRVFYQHCRSILDGLDAAEQAVSNLQSKPQGRINLTAPVTYGEQQLLPLVNDFMVQYSDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++   L N+ ID+     D AIR+ K +  S+++ +KL        AAP Y K    P +
Sbjct: 121 EVTAFLSNQKIDLIEGGYDLAIRIGK-LSDSTMMAKKLSHRTNFVCAAPTYFKKYGRPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +++ +           D+      D          ++ NS  S++   + G GI 
Sbjct: 180 LDELSQYSCLL-------GTLDYWHFKEEDTERNIRVSGKIRYNSGYSLVDAALKGLGIV 232

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPDY V+ +     L+ ++++       ++  YP     + K++   +++  
Sbjct: 233 QLPDYYVQKHLVTGRLMTVLDEYREQEEGIWAIYPHNRHLSPKIRLLVDYLAE 285


>gi|115352754|ref|YP_774593.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282742|gb|ABI88259.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 323

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++       Q  + KPSG LR+     LG+ ++   L  F   YPD
Sbjct: 61  EGAAYYEHCMKIISEIAEADASFQSGNRKPSGVLRVHMPSSLGRRVVLPALSIFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP 
Sbjct: 121 ITLDLGLSDRYVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLKRVTCASPDYLARHGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I +L  H+ + F            W+  +D    E R+   + VN   + +   + G G
Sbjct: 180 EIADLADHHAVNF--RASHGARAIPWVFMIDGKPLEVRMNGSVTVNDSDAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     + +LV ++ D       +   YP     + K++ F +++  
Sbjct: 238 MIQPTLFMVLPNLRDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWLAE 292


>gi|261393197|emb|CAX50816.1| HTH-type transcriptional regulator CrgA [Neisseria meningitidis
           8013]
          Length = 299

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSAEELAGHQCLGFTE--PGSLNTWAVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++V ++     L+ ++ +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEEL 293


>gi|121634228|ref|YP_974473.1| lysR family transcriptional regulator [Neisseria meningitidis
           FAM18]
 gi|254804320|ref|YP_003082541.1| putative LysR-family transcriptional regulator [Neisseria
           meningitidis alpha14]
 gi|304388393|ref|ZP_07370503.1| contact-regulated protein A [Neisseria meningitidis ATCC 13091]
 gi|120865934|emb|CAM09671.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis FAM18]
 gi|254667862|emb|CBA03919.1| putative LysR-family transcriptional regulator [Neisseria
           meningitidis alpha14]
 gi|254671007|emb|CBA07778.1| putative transcriptional regulator LYSR-type [Neisseria
           meningitidis alpha153]
 gi|254672415|emb|CBA05746.1| putative transcriptional regulator LYSR-type [Neisseria
           meningitidis alpha275]
 gi|304337625|gb|EFM03784.1| contact-regulated protein A [Neisseria meningitidis ATCC 13091]
 gi|308389955|gb|ADO32275.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis alpha710]
 gi|325131500|gb|EGC54207.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M6190]
 gi|325137546|gb|EGC60128.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis ES14902]
 gi|325141609|gb|EGC64073.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis 961-5945]
 gi|325197644|gb|ADY93100.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis G2136]
 gi|325204813|gb|ADZ00267.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M01-240355]
          Length = 299

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEELAGHQCLGFTE--PGSLNTWAVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++V ++     L+ ++ +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEEL 293


>gi|148557931|ref|YP_001257231.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148369216|gb|ABQ62088.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840]
          Length = 305

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 12/294 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LT
Sbjct: 1   MS-SLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 60  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P
Sbjct: 120 DLTVNMQLSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI       LQ NS   + +  + G G
Sbjct: 179 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPTGPLQTNSSEIVREAVLAGLG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 233 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 286


>gi|78067951|ref|YP_370720.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968696|gb|ABB10076.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 349

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEHLAEHPSLSLPT---EYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|307261163|ref|ZP_07542839.1| hypothetical protein appser12_7240 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869145|gb|EFN00946.1| hypothetical protein appser12_7240 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 298

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 134/292 (45%), Gaps = 11/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE
Sbjct: 1   MDKLNAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+
Sbjct: 61  AGLLYYQRCLPILNELKDAEDSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P 
Sbjct: 121 IQLNIEFSDRRVDVVAEGYDLVLRIGA-LEDSSIVAKRIARSELVLLASPEYLAKHGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H  + + +       D       D+ +     + +  N+  +++Q    G GI
Sbjct: 180 NLAQLTEHTCLIYENHQQWQFTD------GDQKVKIKPNAHVISNNGYALLQMTKAGQGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++ K+      LV I+      S  +   YP     + K+K    F+
Sbjct: 234 VNLPLFLAKEEISAGKLVEILPQYKQHSIDISILYPHRRYLSPKVKVLIEFL 285


>gi|254000178|ref|YP_003052241.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253986857|gb|ACT51714.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 312

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 150/291 (51%), Gaps = 6/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ ++ F  V    SFT AA  L+L +++IS Q+  LE  +G+KL  R  R +++T 
Sbjct: 1   MDRFEAMQAFTRVVELASFTKAALSLNLPKTTISAQVQALENRLGVKLLNRTTRHVSVTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     + ++LE T+  L++++ +PSG+LR+     +G+ +L   L +F   YPD
Sbjct: 61  DGAAYYERAVALLNELEETEAALRQATSRPSGRLRVDVPGSIGRRILIPALADFTEKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++  +++ +D+  +  DC IR   P+   SL+ R++ ++     A P YL+    P+
Sbjct: 121 IILEMGCNDRPVDLLEEGVDCVIRGGDPL-DQSLVARRVASLRFVTCATPGYLRKHGIPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L++H  I +       + +F++    +R         +  N   + +  C+ G G+
Sbjct: 180 QPRDLERHTGIHYFSSKTGKVYEFDFERDGER-YEVSSHRKMIFNDGDACLAACLAGLGV 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                ++V+++     L  ++   ++ +  +Y  YP+    + K++AF ++
Sbjct: 239 FQAATFMVQEHIASGELQVVLGTHLSENLPLYVLYPQNRHLSSKVRAFIDW 289


>gi|293394798|ref|ZP_06639089.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422749|gb|EFE95987.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 295

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 138/286 (48%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  VA +GSF  AAE L L  S+++  + GLE  + ++L  R  R ++LT +G +  
Sbjct: 1   MQIFTRVAEAGSFVRAAETLSLPPSTVTSTLKGLEKYLQVRLLNRTTRRVSLTPEGLQYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   ++  +  L +S  +P G+LR+     +   ++  NLK+F   YPDI + + 
Sbjct: 61  AQCREILFLIDHAEASLTDSVKRPQGRLRVDMPGGIAHFIVMPNLKDFFRRYPDIYLMVG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D+  +  DC IR+ + + +S+L+ R L        A+P YL+    P S +EL 
Sbjct: 121 VNDRQVDLIQEGVDCVIRVGE-LNNSTLVARPLGRFRWVTCASPDYLREYGIPQSPEELS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I +     K   +  +    +     P      VN     ++ C+ G G+  L + 
Sbjct: 180 RHRAIHYFSGQAKRANEMRFARGAETR-SIPMNGGTAVNETGLYIKMCLDGFGLVQLAES 238

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V +      L+ ++ D   PS  V   YP     +  ++ F +++
Sbjct: 239 VVSEYLQAGKLIEVLADWQPPSIPVNLLYPHQRFLSPAVRVFADWV 284


>gi|37679026|ref|NP_933635.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37197768|dbj|BAC93606.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 295

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 136/292 (46%), Gaps = 11/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+ +  F  VA SGSFT AA +L  S +++SR++  LE  +G+KL  R  R ++LTE
Sbjct: 4   NIHWEGVNEFVAVAESGSFTQAATRLETSVANVSRRVGQLEERLGVKLLLRSTRKVSLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +    +   L   ++ + +    P GKLRI   +  G+  +   L  FL+ YP 
Sbjct: 64  AGQIYVQHCRSILEGLHQAELAVTQMQQTPQGKLRITAPVTYGEQKIAPLLNGFLIRYPK 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L N+ +D+     D A+RL + ++ SS + R+L   H+H  A P Y +    P 
Sbjct: 124 IDLELVLTNQKLDLIEQGVDIAVRLGQ-LEDSSSMARRLSDRHLHVCATPEYFEQHGMPH 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  HN +           D        +         ++ +S + ++   + G G+
Sbjct: 183 TLSDLSSHNCLI-------GTHDHWRFKENHQGRSIKVNGRIRCSSGVVLLDAALKGIGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V ++     L+ ++         V+  YP     + K++   + +
Sbjct: 236 VQLPDYYVDEHLHAGRLIEVLTHFRDDREGVWALYPHNRHLSPKVRLLVDHL 287


>gi|269967178|ref|ZP_06181243.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269828168|gb|EEZ82437.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 298

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 128/291 (43%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D +++F  +A + + + A ++L LS +  S  I+ LE  +G++L +R  R ++LTE+
Sbjct: 1   MNIDHVKLFVRLASTHNISMAGQELGLSPAVASAHINKLEDSLGVRLVHRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        EV   +E  +  +      P+G LRI  +   G+  +   LK F+  YP +
Sbjct: 61  GQAFLPHAEEVLATVEAARGAVGSGQSAPTGVLRITASATFGRLHIVPALKGFMARYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +     +  ID+     D AIR+ + ++ SSL+ RKL        A+P Y++    P  
Sbjct: 121 TVDCRFSDSIIDLVEGGFDVAIRVAE-LKDSSLVARKLAPDRRIIVASPDYIEQFGRPNK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H  I    +            T D           + ++  ++    V G GI+
Sbjct: 180 PQDLTNHECINLVGMNNWS------FNTKDGMFNVRTSGRFKTDNGDAMRDATVNGLGIS 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNF 289
           +   + V     +  LV ++ED        ++  YP +     K++AF ++
Sbjct: 234 INSVWSVYQELQSGQLVEVLEDHPLAMDAGIWAVYPSSRLIAPKVRAFIDY 284


>gi|330874856|gb|EGH09005.1| Transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 315

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L +F   A+S SF     ++ +S S++S+ IS LE  VG++LF R  R + LT +G
Sbjct: 3   TLSSLEIFVETAQSQSFVATGRKMGISASAVSKSISRLEVRVGVRLFQRSTRTVRLTSEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +  +++  Q +L   +  P G+L++   +  G  L    +  F+  YPDI+
Sbjct: 63  EVFLERCRRILSEIQAAQDDLSAMTASPRGRLKVGLALAAGLPL--PVISGFMERYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ +D+  +  D  IR    +Q S L+ R L        A+P YL+    P+  
Sbjct: 121 LDLDFTDRLVDVIDEGFDVVIR-GSDLQDSRLMSRPLGPYRSCLVASPAYLEKRGTPVKP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ + +       +  + +  ++    G      +  ++  +++     G GI  
Sbjct: 180 ADLLNHSCLHYRWQNSGKLYQWPFKKSMLLQPGTSLPVTMVCSNVEALIYLAQAGRGITC 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +PD+ V++   +  L +++ + +  S T +  +P + +   K++AF +F   
Sbjct: 240 VPDFAVEEHVADGRLEKVLSNCLMGSSTFHVVWPSSRQMAPKVRAFVDFAVE 291


>gi|197337242|ref|YP_002158154.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314494|gb|ACH63943.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 307

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 138/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  VA   +FT AAE+L +S+S +S+Q+  LET +  +L  R+ R +++T
Sbjct: 1   MLDNLHEMVIFATVANELNFTRAAEKLGISKSHVSKQVKALETRLDCQLVQRNNRSVSIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS+      ++          L     + SG  ++      G + +   L EF   +P
Sbjct: 61  ELGSQYAEYCQKLIDIAYEADALLDAHHGRISGVFKVGIAQSFGNSHIIHALAEFQAQFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++++ L +    +  D  DC I +   +    ++ RK+        A+P Y++    P
Sbjct: 121 EIELEVSLFDHKPKLLEDGLDCWIAIHDDLP-EGMVARKIADCRFVVAASPGYIEQHGCP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               EL KH  IT+     +     +W  T D       + S  ++++  +I+     G+
Sbjct: 180 TRPAELVKHKCITYQSNERRFN---DWEFTRDGVHQVVNVQSNFKIDNASAILDATKAGA 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIA L  Y+++   DN +LVR++++        +Y  YP       K++ F +F+  + 
Sbjct: 237 GIAYLASYLLENEFDNGSLVRLLKEWQADMKLPIYAVYPRRQHLPPKVRTFIDFLSQQV 295


>gi|327392828|dbj|BAK10250.1| putative HTH-type transcriptional regulator YafC [Pantoea ananatis
           AJ13355]
          Length = 312

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 136/296 (45%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+VF  V  SGSF+ AAE L ++ S++SR I  LET++G+ L  R  R L LT
Sbjct: 1   MKASSEELKVFVSVVESGSFSRAAETLEMANSAVSRTIKKLETKLGLALLTRTTRNLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +  +        +   + EL ES   P G LRI     +  +L+   +K F   YP
Sbjct: 61  QEGERYFQQVQHFLQVMTAAENELMESRDVPKGLLRIDAATPVILHLIMPMIKSFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + LI     I++     D AIR    +  S L  R L   +    A+P YLK    P
Sbjct: 121 DIALSLISSENFINLIERKVDVAIRAGS-LTDSGLRARLLFISYRRLIASPDYLKKHGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L   +LD H  + F D          W    +        S L  NS  +I Q C+ G+G
Sbjct: 180 LRAADLDNHQCLGFIDAPRLN----RWPVACEGGELYGIRSELDSNSGETIKQLCLEGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA L DY+V    +  +LV IM D   P        Y   L  T +++AF +F+  
Sbjct: 236 IACLSDYMVHKEIEEGSLVEIMADQRLPVEMPFNAVYYSDLGVTQRVRAFIDFLSE 291


>gi|34498758|ref|NP_902973.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34104609|gb|AAQ60967.1| probable transcriptional regulator, LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 298

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 132/293 (45%), Gaps = 8/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  V   GS + AA QL +  + + R++  LE  +G++L  R  R +  T++G
Sbjct: 3   ELKQLETFVAVVGLGSLSAAARQLGVVPAMVGRRLDALEERLGVRLLVRTTRSVAPTQEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   L   +  +   S +  G LR++     G+  +  ++  F  L+P+++
Sbjct: 63  EAFYEDCQRILADLTEAEAAVASGSGRARGHLRLSAPAGFGRRHVAPHVAAFQRLHPEVK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+  D  DCAIR+   +  S L+  +L   H    A+P YL     P ++
Sbjct: 123 VTLDLSDRLVDLQRDRIDCAIRISD-LSDSGLVAIRLAENHRVVVASPAYLAAHGAPRAL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  ++ G+   +        A   +P+       L+ N    +  + + G G+A 
Sbjct: 182 EDLQRHQCLSLGESQSRGWS----FAVDGKPVNLKVSGALECNDGAVLHDWALQGLGLAW 237

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + VKD+     L  +++D  +P + VY   P+      +++ F   +   
Sbjct: 238 RSLWEVKDDLSEGRLATVLDDFSSPDYPVYAVVPQRKLLPARVRHFIEHLKAA 290


>gi|15598073|ref|NP_251567.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107102426|ref|ZP_01366344.1| hypothetical protein PaerPA_01003488 [Pseudomonas aeruginosa PACS2]
 gi|218890924|ref|YP_002439790.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235864|ref|ZP_04929187.1| hypothetical protein PACG_01807 [Pseudomonas aeruginosa C3719]
 gi|254241542|ref|ZP_04934864.1| hypothetical protein PA2G_02242 [Pseudomonas aeruginosa 2192]
 gi|296388636|ref|ZP_06878111.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|9948967|gb|AAG06265.1|AE004714_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126167795|gb|EAZ53306.1| hypothetical protein PACG_01807 [Pseudomonas aeruginosa C3719]
 gi|126194920|gb|EAZ58983.1| hypothetical protein PA2G_02242 [Pseudomonas aeruginosa 2192]
 gi|218771149|emb|CAW26914.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 297

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 150/299 (50%), Gaps = 9/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  VA +GSFT AA+ L + ++++S  +  LE ++G +L +R  R + LT 
Sbjct: 1   MDRLDSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS +      +   +E  +    +   + SG+L++     + + L+   L EF   +PD
Sbjct: 61  DGSVVLERCRHLLEDMEELESLFHDG-SRASGRLKVDVPSRVARLLIAPALPEFFRQHPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+  +  DC +R+ + + +SSL+ R+L  + +   A+P YL+   EP 
Sbjct: 120 IELELGSSDRSVDLVQEGVDCVLRVGQ-LGNSSLVARRLGEMQLINCASPAYLEEHGEPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +LD+H  + +       +  + +     R +     S + VN+  S +  C+ G G+
Sbjct: 179 TPADLDRHWAVNYASPSSGRVLPWEYRED-GRTLTRALRSRVTVNNAESYIACCLSGLGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
             +P Y V+++     L  ++      +   Y  YP     + +++AF +++   L+AR
Sbjct: 238 IQIPAYDVREHLQRGELREVLPQWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLLRAR 296


>gi|193077075|gb|ABO11838.2| putative LysR-family transcriptional regulator [Acinetobacter
           baumannii ATCC 17978]
          Length = 306

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 137/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L++F  +   GSF+ AA+QL++ +++ S  I  LE  +  +L  R  R +  + 
Sbjct: 1   MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELENNLQCRLLERTTRHVRPSL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPD
Sbjct: 61  DGQAFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P 
Sbjct: 121 IELVISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + F          F  L    +       S + VN   + +   + G+G+
Sbjct: 180 QPEDLLSHYCVNFFSTSGGRNYPFE-LMVNGKKQDYFLKSWIAVNDAENYVLSALQGAGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V +   N  LV ++ +  +P  +V   YP+  + + +++ F  ++  
Sbjct: 239 IQVPHYHVANELKNGRLVEVLSEWESPKMSVSALYPQHRQLSPRVRVFVAWLSE 292


>gi|190895042|ref|YP_001985335.1| putative LysR family transcriptional regulator [Rhizobium etli CIAT
           652]
 gi|190700703|gb|ACE94785.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327194376|gb|EGE61236.1| putative LysR family transcriptional regulator [Rhizobium etli
           CNPAF512]
          Length = 307

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 138/296 (46%), Gaps = 8/296 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D    +  F   A   S+  AA    +S S+I + ++ LE+ +G++LF R  R ++L
Sbjct: 1   MAVDSLASIVAFVHAAEQQSYVAAARLAGVSPSAIGKAVARLESRLGVRLFNRTTRSISL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE+G+ L+     V   +   +  + +   +P G+LR++    +G +LL   L  F   +
Sbjct: 61  TEEGTVLYEHYKRVLDDMRDAEAAVSKGRDRPRGRLRVSVPHIVGHHLLMPILPGFTARF 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I++ +  +++ ID+  +  D  +R  + +  + LI R L   H    A+P YL     
Sbjct: 121 PEIELDIDFEDRVIDLITEGLDVVVRSGE-LADARLIARPLGEQHFVVCASPAYLDRHGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H  I F          + +    +R +       L  N+  + ++    G 
Sbjct: 180 PETPDDLSRHACIHFKYPSTGRTAPWAFRPPSERLLLP---RSLTFNNTDAGLRAARDGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+A LP Y+ + +     L+ ++   + P  ++   +P   + + K++AF +F+  
Sbjct: 237 GLAHLPVYVAEPHIRAGTLIPVLTAFMAPFGSLSLVWPSNRQLSPKIRAFVDFVVE 292


>gi|89899253|ref|YP_521724.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89343990|gb|ABD68193.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 313

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 132/288 (45%), Gaps = 6/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F ++ RSGSF+ AA +L ++  ++S++++ +E  +G++L  R  R + LT +G   
Sbjct: 10  EMAFFSLLVRSGSFSAAARELDITTPAVSKRLAQMEARLGVQLLNRTTRRIGLTPEGEVY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +   +  +  S   P G LR+  T+  G++ +   + +F   YP++QIQL
Sbjct: 70  LEHARRILADIGDMEQLVSNSVAAPKGLLRVNATLGFGRSHIAPLISDFAKRYPEVQIQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  IR  +P   + +I R++ +      AAP YL     P    +L
Sbjct: 130 QLTVNPPSLTEDAFDVCIRFGEP-PDARMIARRIASNRRLICAAPAYLTRQGTPQVPNDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN I               L +  R         L  N     + + + G G+ +  +
Sbjct: 189 AQHNCICIRQGEEAYGIWH--LRSGQRSETVKVRGTLSTNDGEIAVNWALAGHGLIMRAE 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + +     +  L +++ +  TP   ++  YP++L+   +++AF +F+ 
Sbjct: 247 WDIAKYLASGRLRQVLANWQTPGADIHAVYPQSLQTAARVRAFVDFVV 294


>gi|148654094|ref|YP_001281187.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148573178|gb|ABQ95237.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1]
          Length = 304

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 136/291 (46%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  +  SGS T A+EQL +++S++SR++  LET +  +L  R  R  T+TE G 
Sbjct: 4   LEDMALFVRIVESGSITKASEQLDIAKSAVSRRLKELETSLNTQLISRTTRRSTVTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           K ++    +  ++E    ++   + +  G +R+   +  G   L   +  +   +P +  
Sbjct: 64  KYYQQACSILSEIEVLNEQISGVASQIEGTMRMTAPLSFGLMHLNDIIHNYAQQHPQLNF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ ID+  +  + AIR+ + ++ SS   ++L  I     A+P Y+     P +I 
Sbjct: 124 ELDFSDRHIDLVEEGYEMAIRIGE-LKDSSYQAKRLTVIRRVLCASPDYIARAGMPQTIA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  + +G  +     + + +    +       S ++ N+   ++   + G GIA +
Sbjct: 183 DLKQHAFLQYG--LQSKQGEIDLIDASGQHHKIETQSRIKANNGNFLLDMAIKGYGIAYM 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P +I   +     L+ +M D   P+   Y  YPE    + + +   ++I  
Sbjct: 241 PTFIAYQSLAEGKLIPVMADFELPTLNAYAVYPENRFLSKRCRLLIDYIIE 291


>gi|49084700|gb|AAT51224.1| PA3630 [synthetic construct]
          Length = 303

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 136/291 (46%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA +G FT AAE++ +S S ISRQ++ LE  +  +L YR  R ++L+E G 
Sbjct: 4   WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     + + S +P G LR+   +  G+  +   +  F+  YP +++
Sbjct: 64  TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  S L+  +L    M+  A P YL+    P S  
Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCATPEYLRRHGTPQSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL + N +     +   +ED        R          + NS  +++   + G G+  L
Sbjct: 183 ELGQFNCLIGSSDLWSFLED-------GRETQHRVQGNWRCNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V ++     L  ++E    P+  V+  YP+    + K++   +++  
Sbjct: 236 PDYYVIEHLRSGRLASLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYLKE 286


>gi|330806843|ref|YP_004351305.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327374951|gb|AEA66301.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 292

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 141/297 (47%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D ++VF  V   GSF+  A +L+L Q ++S+QI  LE  +G  LF R  R L LT
Sbjct: 1   MDL-FDAMQVFVRVVERGSFSAVARELNLGQPAVSKQIRALEQHLGGALFARSTRHLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +QG + +  + ++   L+  ++       + +G LR+A  +  G+  +   + EFL  +P
Sbjct: 60  DQGQRFYAESKDILASLDAARLSFASGQEQIAGLLRVAAPVSFGRLCIAPLVGEFLARHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L L +++ D+  +  D AIR+   ++S  L+   L       YA+P YL+   +P
Sbjct: 120 QLRIDLRLSDQNEDVLKENIDLAIRIG-VVKSEGLVAISLGDSPRRVYASPAYLQQHGKP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+  +L  HN + F  L    +  F+      R         +  NS  +I +  + G G
Sbjct: 179 LAPADLVGHNCLAFTLLEHYDVWRFD---QDGRQHSVTIKGNVTCNSSEAIREMVLSGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++L P ++   +     +  ++ D    +  V   +    + + + +AF +F+  + 
Sbjct: 236 VSLSPQWLFAADIRQGTVCTVLADYQPLALPVSAVFSHDRRRSARTRAFVDFLRERL 292


>gi|319409826|emb|CBY90134.1| HTH-type transcriptional regulator CrgA [Neisseria meningitidis WUE
           2594]
          Length = 299

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSESYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEELAGHQCLGFTE--PSSLNTWAVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++V ++     L+ ++ +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEEL 293


>gi|317054023|ref|YP_004118048.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952018|gb|ADU71492.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 291

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 142/295 (48%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LR++  V ++G+FT AAEQL LS+  +SR+I+ LE  +G +L  R+ R L++T+ 
Sbjct: 1   MQIDDLRIYVAVIKAGNFTSAAEQLMLSKQYVSRRIAALEESLGARLLNRNTRKLSVTDN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +   ++  ++ +        G  R++  +  G + L   + EFL L+P +
Sbjct: 61  GQLFARHAQRILDDVQEAELAVSGRRQVLQGSFRLSVPMSFGISHLSPYIAEFLSLHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q Q+ L ++ +D+  +  D AIR+   +  S+LI +KL        A+P YL+    P  
Sbjct: 121 QFQVELADRYVDMIGEGFDMAIRIG-TLPDSTLIAKKLGEFRRVICASPRYLQGADAPRK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H  + +G       E F         +  P +S    N+   +    + G G+ 
Sbjct: 180 PEDLLDHACLRYGRESQTGWELFRGEQREVINVQGPMVS----NNGEMLRDAAMAGLGLI 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP++IV     + +LV +++D    S ++   YP+  + +   + F  F+  K 
Sbjct: 236 LLPEFIVAPALASGDLVTVLDDWHPSSLSLNALYPQHRQRSEVNRVFMAFLQQKL 290


>gi|242001334|ref|XP_002435310.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215498640|gb|EEC08134.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 310

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +R F  +   G    AAE L +S + +S+Q+  LE  +   L  R  R ++LTE
Sbjct: 1   MDTFNVMRTFRRIVELGGLAKAAEDLGISAAGLSKQLRSLEAHLDTVLIQRTTRSMSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +  +L+  +  +++ S + +G LR+   +    ++L   + +FL  YPD
Sbjct: 61  TGRSYYAECCRLLDELDALERSVKQQSQRVAGTLRVNAPLSFALSVLSPLITDFLRKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+++++ +D      D ++RLR  +  S+LI R+L TI     AAP YLK   +P 
Sbjct: 121 LKLELVMEDRIVDAVAHGFDVSVRLRTSLDDSTLIARRLATIEQKLCAAPAYLKLHGQPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL---------QVNSYLSIM 232
           ++Q+L  H +I++        +   + + +D     P              QVN+ L + 
Sbjct: 181 TLQDLRHHQMISYSLA---HTQGIVFDSDIDSAPNTPAPGSTALLFSGEHSQVNNSLMLR 237

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + + G GI  LP ++      +  L R++ + +     +Y  YP       K+KAF ++
Sbjct: 238 DFLIAGLGIGALPSFLADPAIASGQLQRVLPEFVNEPRHIYAVYPTNRHLQPKVKAFVDY 297

Query: 290 IFLKA 294
           +  + 
Sbjct: 298 LAAQL 302


>gi|90412854|ref|ZP_01220854.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90326213|gb|EAS42640.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 299

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 130/298 (43%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  +   GSF+ AA QL LS+  +S  +  LE  +G+ L  R  R +
Sbjct: 1   MDVSFEQLKSMVVFAKIVEQGSFSAAARQLGLSRGVVSYHLKKLEDHIGMPLLNRTTRSI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT+ G +  +    +  +     ++++    +P GKL I+  +++  + +   L  F  
Sbjct: 61  SLTDAGQRYFQRCKRISEEAAAANLQIENLREEPEGKLTISAPVNISMHTIVPALNTFKT 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP I+I L L +  ++I  +  D AIR   P+  S L  +KL+T+      +PHY    
Sbjct: 121 LYPKIEIDLNLTDDIVNIIQEGVDLAIR-GAPLADSGLYAKKLMTMKNILCGSPHYFNQH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P +  EL  H  + +     K       L    R         +  NS  +   + V 
Sbjct: 180 GIPRTPAELANHEWVVY-----KKTSKIQTLTKGTRSYNVKMQGSITTNSASARTAFVVG 234

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G G+  LP Y          L  I+ED      T+Y  YP    N+ K++   +++  
Sbjct: 235 GHGVGRLPIYDALPLIKAGQLTPILEDYELSDITIYGVYPPRAANSKKMQLLLDYLQE 292


>gi|172061618|ref|YP_001809270.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994135|gb|ACB65054.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 323

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++       Q  + KPSG LR+     LG+ ++   L  F   YPD
Sbjct: 61  EGAAYYEHCMKIISEIAEADASFQSGNRKPSGVLRVHMPSSLGRRVVLPALSIFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP 
Sbjct: 121 ITLDLGLSDRYVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLKRVTCASPDYLARHGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I +L  H+ + F            W+  +D    E R+   + VN   + +   + G G
Sbjct: 180 EIADLADHHAVNF--RASHGARAIPWVFMIDGKPLEVRMNGSVTVNDSDAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     + +LV ++ D       +   YP     + K++ F +++  
Sbjct: 238 MIQPTLFMVLPNLRDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWLAE 292


>gi|329113564|ref|ZP_08242344.1| Putative HTH-type transcriptional regulator YafC [Acetobacter
           pomorum DM001]
 gi|326697086|gb|EGE48747.1| Putative HTH-type transcriptional regulator YafC [Acetobacter
           pomorum DM001]
          Length = 305

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F  V  +G+FT AA  + LS + +++ ++ LET +G+ LF R  R L+LTE G    
Sbjct: 8   MQIFVKVVAAGNFTGAARLMALSPTMVTKHVTALETRLGVSLFQRSTRHLSLTEAGRLFL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E  +  + E   +P G+LR+   +      +   L EF   YP +Q++L 
Sbjct: 68  ESCQKILADVENMEQTVSEQYREPRGQLRLNAPVSFAIRYVAPYLPEFSRRYPQVQVELG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D  +R+R  +  S+L  RKL  + M   A+P YL+    P  + EL 
Sbjct: 128 LNDRPVDLVEEGWDLTLRIRN-LTVSTLRARKLAAVRMIICASPAYLEKAGTPTHVNELQ 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN + +   +        W               L  N+  ++ +  V G+GIA LP +
Sbjct: 187 QHNCLGY--TLSGNNSASRWHFGESGEKTVSVSGLLSANNGDALREAAVAGAGIAYLPLF 244

Query: 248 IVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V        L+ +  D   TP   ++  Y        K++A  +++
Sbjct: 245 VVSQELQQGQLIALSLDYPTTPGPDLHAVYAPGTSIPLKVRAMIDYL 291


>gi|88859573|ref|ZP_01134213.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
 gi|88818590|gb|EAR28405.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
          Length = 299

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 132/289 (45%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  V + GSF  AA  L  S S IS++IS LE+ +G++L  R  R L+LT +G 
Sbjct: 7   FDGIEIFVQVVKCGSFNAAASVLSHSSSHISKEISKLESRIGVRLMNRTTRSLSLTPEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   ++    E     +    V+P G L+I+  I   Q  LQ  + ++L +YP++ +
Sbjct: 67  AYFQQCVQLISDAEQAVSLITADDVQPKGTLKISCPIGFSQQYLQSVIAQYLDMYPNVTL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  L +K ID+  D  D AIR  + +  SSLI +++     H   +  Y++    P   +
Sbjct: 127 EWDLSDKRIDLIADGYDLAIRASEQLVESSLICKRVFHCKAHVVVSKGYIEKYGRPHHPR 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ I + +L      DF  +     P        ++ N+    +       GI  L
Sbjct: 187 ELAAHHCICYSNLKMPGRWDF--VERDGTPFQVDVRQKVRCNNGQMQLALVQAHQGITRL 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P + + D   +  L  +  D   P   VY  YP     + K++ F + +
Sbjct: 245 PAFYLNDALQSGELEVLFCDYKEPEVNVYAIYPSRKHLSPKVRCFIDLL 293


>gi|107028770|ref|YP_625865.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690071|ref|YP_835694.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897934|gb|ABF80892.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648160|gb|ABK08801.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 301

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ EL +HN +    L     +   W    D  +   R+   ++ +    + ++C+ G G
Sbjct: 180 TLAELARHNCLA---LAANANQQRGWSFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V ++     LV +++    P   ++  +P+      +++ F +++
Sbjct: 237 LAWRSWWEVGEDIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDYL 289


>gi|323526521|ref|YP_004228674.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323383523|gb|ADX55614.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 300

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 139/293 (47%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDRFKQIETFVTVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + H ++  +  +    VK SG LR++     G+  +   +  F + +PD
Sbjct: 61  EGSAFLEDCQRIIHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSITLDLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPSYLSRRGAPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           S+ +L +HN +  G       +   W+   D  +   ++S  ++ +    + ++C+ G G
Sbjct: 180 SLADLAQHNCLALG---ASANQQRGWVFQQDGKVVSIKVSGTMECSDGAVLHEWCLEGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGADIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|118593258|ref|ZP_01550643.1| Transcriptional Regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118434149|gb|EAV40805.1| Transcriptional Regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 298

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 136/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R F  VA+ GSFT A  +L LS   +S+ +  LE ++  +LF R  R ++LT+
Sbjct: 1   MDKIETMRAFVAVAQEGSFTAAGRRLGLSTKLVSKYVQHLEGQLKTQLFNRTTRSVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  +L+     ++E     +G++R+      G   L   L  FL  +PD
Sbjct: 61  VGAAYLEHCRPILEQLDDLDSLVRERQGALAGQIRLTAPTGFGSTRLSEALVPFLRKHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L +  + +  +  D AIR+   ++ S+LI RKL  + +   A+P YLK    P 
Sbjct: 121 VELDMRLTDHRLALVEEGLDLAIRIGA-LRDSTLIARKLAGMPLVLCASPDYLKRHGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
             + L  H  +   +     +    W           R+S  ++ NS  ++    + G G
Sbjct: 180 DPRALSTHVCLVDSNQTELNI----WRFHCGGEEHVVRLSGAVRSNSPGALAHMAMGGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I + P Y ++D   +  L R++ D  T +F +Y  YP     T +++A    +  +
Sbjct: 236 ITIAPLYAIEDALKDGRLERVLPDYETDTFGLYALYPPNRHLTRRVRALIEHLAAE 291


>gi|16330261|ref|NP_440989.1| transcriptional regulator [Synechocystis sp. PCC 6803]
 gi|1652750|dbj|BAA17669.1| transcriptional regulator [Synechocystis sp. PCC 6803]
          Length = 295

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 141/297 (47%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +  F  V R GSF  AA +++L +S++++ +  LE E+ ++L +R  R +T T 
Sbjct: 1   MDKLESIYAFTQVVREGSFAAAARKMNLGRSTVNKMVIALENELKVQLLHRSTRKVTPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  + ++   LE  ++ + +   +P G LR+   +  G   +   + +F+ L+  
Sbjct: 61  TGIAFYEKSVQILADLEEAELSVSQLHGEPKGLLRVNAPMTFGTMYIAPLVAKFMALHSQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL L+++ +D   +  D  IR+ +P++S+SLI + L    +   A+P YL     P 
Sbjct: 121 VEVQLTLEDRFVDAIAEGYDLLIRIAQPLESASLICQPLFQTKLLLCASPEYLAVRGMPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++++L +HN + +G         + +L      +          N+  ++      G GI
Sbjct: 181 ALEDLQRHNCLLYG--YSSGGSQWQFLGQAGEKVISVS-GNFCSNNGEALAIAVAQGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ALLP +IV+   +   +  I+ D      TV   YP       K+K F  F+    R
Sbjct: 238 ALLPQFIVQPYLEAGKMQIILPDYCLRELTVSLIYPVNRHLATKVKLFTEFLQDHYR 294


>gi|84503072|ref|ZP_01001168.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84388616|gb|EAQ01488.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 307

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/291 (37%), Positives = 170/291 (58%), Gaps = 4/291 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS THA + LHLSQS++SRQI GLE  +   LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVADAGSLTHAGDALHLSQSAVSRQIRGLEESLNTTLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +L+T    +++S  +  G+LR+ TT   G   L   L +    +PD+
Sbjct: 61  GELLFDATRAMAKRLDTATARIRDSEEEVFGELRVTTTTGFGTLWLAPRLPKLYEKFPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+++ M  YA P YL     P  
Sbjct: 121 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMSLRMRMYALPDYLDRAGRPSR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+E+ +H LI          +       V   +     S L VN+Y   +Q  + G GI 
Sbjct: 180 IEEISRHRLIC---QNTSAAQVAAGAQLVQELMSYDVSSLLTVNNYFGALQAVLNGLGIG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +LPDY+V+D P L R++  V +    V+  +PE L+++ ++ AFR+F+  +
Sbjct: 237 VLPDYLVEDFPTLERVLPGVESQEVPVFLAFPEELRHSKRIAAFRDFVQEE 287


>gi|150395618|ref|YP_001326085.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027133|gb|ABR59250.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 298

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 127/292 (43%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L +F  V  +GS + A   L  S + IS++I  LE  +G +L  R  R +++TE G 
Sbjct: 4   LGDLEIFARVVSTGSMSAAGRALGFSAAVISKRIKRLEDRLGTRLLQRTTRQISMTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +      S +  G LRI+     G+  +  +L  F+  +PD+++
Sbjct: 64  GFYDRVLGILAGLEEAEAYASGRSSQVRGTLRISAPTSFGRLHIAPHLTGFMKDHPDLKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +   DI  +  D AIR+ + +  SSL+ R+L  +     AAP Y+ +   P  I 
Sbjct: 124 HIVLTDDFTDIVAEGFDLAIRIGE-LSDSSLVARRLAPVRRLLCAAPSYVASHGTPKDIG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  +      P    D   L   +  +       L  NS   I +  + G+GIAL 
Sbjct: 183 ELASHICL------PAHNNDNWKLEGPEGNLSYRPEGPLVTNSSEIIREAVIAGAGIALR 236

Query: 245 PDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             + +     +  LV+++     +   T+   YP       K++ F +++  
Sbjct: 237 STWDIGRELRDGRLVQVLPQWEGSHRLTLSAVYPSRQFLPAKVRMFIDYLAA 288


>gi|70731392|ref|YP_261133.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345691|gb|AAY93297.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 296

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA   SF+ AA  L  S +++S+Q+  LE  +G  L  R  R ++L+E G + 
Sbjct: 6   AMRTFRRVAERSSFSQAATDLGQSTAAVSKQVRQLEERLGSLLILRTTRRMSLSEAGQRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L+  +   Q    +P G+LR+   +  G  +L   L  F+  YP +Q+ L
Sbjct: 66  FSECCHLLDELDALERATQAGLHEPGGRLRVNAPLSFGLKVLSPILVAFMQRYPQLQVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ +D+  +  D ++R+R+ ++ SSLI R+L  +     AAP YL+    P SI +L
Sbjct: 126 TLNDQVLDVVGEGFDVSLRIRRQLEDSSLIARQLGQVEQIICAAPAYLQAAGTPASIADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  + +             L   +             ++ L +    V G GI  LP 
Sbjct: 186 HQHRCLAYRLAEHPGRWH---LQGPEGQTRLELPVHFSADNSLLLADMLVAGLGIGALPG 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++ +   D+  L+R++ D   P   +Y  YP     + K++ F +F+    +
Sbjct: 243 FVAQPLLDSGQLLRVLPDQHLPGRHIYALYPSQRHLSQKVRVFVDFLVEALQ 294


>gi|119899157|ref|YP_934370.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119671570|emb|CAL95483.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 313

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 137/295 (46%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +L VF  V  +GSF  A + L +S++++SR +  LE  +G +L  R  R L+LTE
Sbjct: 1   MDRFRELSVFVAVVDAGSFVGAGDALRISKAAVSRCVQDLEARLGARLLQRTTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L+     +   + +P G+L++   +  G   L     +FL  YP 
Sbjct: 61  AGRAYYARARQLLADLDEADGAVGAVTGQPVGRLQVNAPLSFGVRYLAPLWGDFLARYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L ++ +D+  +  D A+R+ + +Q SSL+ R+L T  +   AAP YL     P 
Sbjct: 121 IELDVSLSDRMVDLVDEGYDLALRITR-LQDSSLVSRQLATTRIVMCAAPAYLAQHPAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + ++  H +I +       +  F     V+  +        + N+  +     + G GI
Sbjct: 180 RLADIAHHAVIAYSYAQSGDVWRFVGPQGVEEEVQT--RPRFRANNGDTCRAAALAGQGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + P ++V D+     L+R++ +       ++  YP     + K++   +++   
Sbjct: 238 VMQPTFLVGDDLAAGRLLRVLPEYGGVEVGIHAVYPSRKHLSLKVRVLLDYLAAA 292


>gi|170744291|ref|YP_001772946.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198565|gb|ACA20512.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 294

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 128/285 (44%), Gaps = 8/285 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F    R+GS + AA +L  S + + +QI+ LE  +G +L  R  R  +LT+ G+   
Sbjct: 7   MRAFVATVRAGSMSAAAAELGQSPAMVGQQIAALEERLGTRLLNRTTRRQSLTDFGASYV 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++   Q   +    +  G+LRI      G   L   L  + L  PD+++ + 
Sbjct: 67  EQCRDILERIALAQEAAELQQTRVQGRLRITAPTTFGAEALMPALGGYRLTAPDVELDIT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++++D+  +  D A R+   IQ S++I R L    M   AAP YL     P+   +L+
Sbjct: 127 LSDRNVDLVEEGFDLAFRIGA-IQDSAMIARPLAPYRMVVCAAPDYLARRGTPIHPDDLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I F    P     + +    D     P    + VNS  ++      G GI + P+ 
Sbjct: 186 GHEAIAF---TPSARSPWTFARGDDERAVTPP-RMITVNSGQAVRAAARAGLGIIMQPEI 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +V+ +     LVR+  +       ++  Y    + T +L++F +F
Sbjct: 242 LVRRDMETGCLVRLFPEWRLGDRPMWLLYHRDRRMTPRLRSFISF 286


>gi|118592819|ref|ZP_01550208.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
 gi|118434589|gb|EAV41241.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
          Length = 305

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 133/293 (45%), Gaps = 8/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D +R F  V   GS + AA +L++S+S +SR+I+ +E  +G +L  R  RG+  TE 
Sbjct: 2   IDLDDMRCFVEVVDCGSLSAAATRLNISKSVVSRKIARIEDLLGTRLLDRTTRGIAPTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +    +  +  + E T   + E S +  G+LR++  +  G   L   L      YP +
Sbjct: 62  GLEFKSRSERILLEYEETLEAISEHSNEIVGELRLSVPLAFGTRHLGPVLASLACRYPRL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     ++ +D+  +  D  IR+   ++ SS I RK+  I     A+P YL+    P S
Sbjct: 122 KVDASFSDRVVDLIGERFDAVIRIGH-LRDSSYIARKIAPISSIVVASPTYLERNGTPQS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H+ + +   +           + +R I       L+ ++  + + + V G GIA
Sbjct: 181 PEDLTAHDCLIYTAALSPDW----VFQSGNRKISVRPSGRLRTDNGDTTVAWAVAGLGIA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             P ++V    +  +LV ++ D  TP   +Y           K++   + +  
Sbjct: 237 HAPLFLVNEAVERGDLVPLLLDYPTPEVGLYVLRAPGANTPRKVRVLIDALVE 289


>gi|73543095|ref|YP_297615.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120508|gb|AAZ62771.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 303

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 140/305 (45%), Gaps = 11/305 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GSF  AA+QL +S + ++R ++ LE+ +G +L  R  R L+LT+
Sbjct: 1   MDRLQSMRVFAKVVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++   +E  +  +   S   SG LR+ T +  G +LL   +  F  LYPD
Sbjct: 61  AGETYLQRCQQILEDVEEAEGVVTARSQSLSGTLRLVTPVMFGLHLLPNLMSRFQQLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++L ++++DI  +  D A+ L      S L+ R L++  +   A+P Y++      
Sbjct: 121 VVFDVLLSDRNVDIVEEGRDVAVMLSDLGLGSHLVARPLISAEIVLCASPEYVRTHAPLR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  H  I     +P    ++  L   +  +  P    L  ++     Q  +   G+
Sbjct: 181 HAHELTSHRCIAM--RLPNVEHEWT-LLGPEGEVTVPIRPGLLCSNAELAHQAALANMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL----KA 294
           A+L  Y+ + N    NLVR++     P   V   YP       K++AF +F+      + 
Sbjct: 238 AMLSSYLARQNIEAGNLVRVLPQYQLPRRDVSVVYPSRKFLPTKVRAFIDFLLEEGQVRG 297

Query: 295 RDWKF 299
           RD +F
Sbjct: 298 RDEQF 302


>gi|261823042|ref|YP_003261148.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261607055|gb|ACX89541.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 301

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 137/304 (45%), Gaps = 12/304 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +  F  V  +GSF  AAE LH+  S+++R I  LE+ +G +L  R  R L++T+
Sbjct: 1   MDRFQAMETFIRVVDAGSFKKAAETLHVLPSTVTRSIKELESHLGARLLNRTTRALSITD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +   +   +    +   +  G +RI  T  L +N L   L +F   +P 
Sbjct: 61  VGLRYYDSCKAILRDVHAAESVTAQQKEELQGTIRIGATPSLVKNFLIPALPDFCERHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++   L +  +DI     DC IR  +P   S L+ R L   H    A+P YL+    P 
Sbjct: 121 IRLDFHLGDATVDIVQQGIDCVIRTGEP-PLSRLVARHLGAFHWTICASPRYLEQHGYPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++  L  H  + +     +     +W    +   +  P    + VN   + +   V G G
Sbjct: 180 TLDSLKDHVAVGYTH--SRAGRSVSWGFHDEAHTVAIPLAGQISVNDTDAYLAAGVAGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF----IFLK 293
           +  +  Y+V+    + +LVR++ D+  P   ++  YP++   +  ++AF ++    I  +
Sbjct: 238 LLRIASYMVRQQLSDGHLVRLLPDLEAPLEPIFILYPQSRHLSPVIRAFIDWCTALIAQE 297

Query: 294 ARDW 297
           A  W
Sbjct: 298 AVKW 301


>gi|77459913|ref|YP_349420.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383916|gb|ABA75429.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 299

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 145/297 (48%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  VA + SFT       +S S++ + I+ LE  + ++LF+R  R +TLT 
Sbjct: 1   MDSLGSISVFVQVAETRSFTETGRLQGVSSSAVGKSIARLEARLNVRLFHRTTRSITLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+       ++  ++E  + EL +++  P G LR++       +L+   + EF+ LYP 
Sbjct: 61  EGTLFLERCRKILAEVEAAEFELCDAAAAPHGNLRVSLPQ--VHDLVMPVMNEFMALYPQ 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L L ++ +D+  +  D  IR  KP + S L+ R L   HM   A+P YL+   EPL
Sbjct: 119 IELDLDLTDRMVDVVEEGFDAVIRTGKP-RDSRLMARPLGEFHMVLVASPAYLRERGEPL 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L +H  +         +E  +W    +    EP + + L   S  ++    + G G
Sbjct: 178 TPADLAEHACLRHTFHATGKLE--SWPFNREEGAPEPTLPTRLVSTSIEAVRHAALAGMG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LPD+++   +    L R++++ +      +  +P +   T KL+ F + +  + 
Sbjct: 236 IACLPDFMIFEAQQQGRLQRVLDEHLEHVGQFWVLWPSSRHATAKLRVFIDHLSARL 292


>gi|325206769|gb|ADZ02222.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M04-240196]
          Length = 299

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEELAGHQCLGFTE--PGSLNTWAVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++V ++     L+ ++ +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IACLSDFLVDNDIAEGKLIPLLAEQTSNKTHPFNAVYYSDKAVNLRLRVFLDFLVEEL 293


>gi|257488029|ref|ZP_05642070.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330891090|gb|EGH23751.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|331008699|gb|EGH88755.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 301

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    EV   +  ++   +++   PSG LRI   +  G  +L   L  F L +P
Sbjct: 60  EFGTAYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+L N+ +D+  +  D AIRL    QSS LI R +    +   AAP YL     P
Sbjct: 120 EVKLDLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARPMQDYTLTICAAPSYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
              ++L  HN + F                +  P GE  +     +  N+   + Q    
Sbjct: 180 AHPEDLGAHNCLAFSYPAGDEWRTAGTQWRMTGPEGEVLVDVDGSMVANTSAGLYQAACA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     LV ++     P       Y +      K+++F  +
Sbjct: 240 GMGVVMLPDALVQRDLQEGRLVALLPGYHLPRRPTNLLYVQDRYRLPKVRSFVEY 294


>gi|158421708|ref|YP_001523000.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158328597|dbj|BAF86082.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 311

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   L +F  +  +G  + A  +L LS   +S+++  LE  +G +LF R  R +TLT
Sbjct: 1   MIGNLGDLEIFARIVTAGGLSAAGRELGLSPPVVSKRVQRLEERLGTRLFQRTTRKVTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +   +E  + +L   S +  G LR++     G+  +  +L   L   P
Sbjct: 61  EAGQGFYDRVVAILASVEEAESQLARRSSEARGLLRVSAPTSFGRLHIAPHLGPLLDANP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L L +  +DI  D  D AIR+   +  SSL+ R+L  +H    A P YL     P
Sbjct: 121 ELTVDLELSDAFVDIVGDGFDIAIRIAD-LTDSSLVARRLAPVHRVLCATPAYLARAGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H L+      P  ++        D P+ +   S L+ NS   + +  + G G
Sbjct: 180 KTFADLADHVLLATHGQDPWRLQ------GPDGPVTQRVHSPLRTNSNEVVREAVLAGVG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
           IAL   + V    ++  L  ++          VY  YP       K++ F + +
Sbjct: 234 IALRSTWDVGPELNSGALQVVLPAYRASHRVGVYAVYPSRRFLPQKVRVFIDHL 287


>gi|206558863|ref|YP_002229623.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198034900|emb|CAR50772.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 349

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLAEHPALSLPT---EYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|319763770|ref|YP_004127707.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330823966|ref|YP_004387269.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317118331|gb|ADV00820.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329309338|gb|AEB83753.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 309

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 140/300 (46%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +++F  V  +GSFT  A +   +Q ++++QI+ +E  + ++L  R+ RG++LTE
Sbjct: 1   MDRLDAMQMFVRVVETGSFTRVAHEFTTTQPTVTKQIAAMEARLKVRLLNRNTRGVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     + + +   +  ++    +  G+LR+ +++  G+ ++     EF+   P 
Sbjct: 61  PGTLYYEKCKAIVNDVADAESVVKVRQSQVHGQLRVGSSVAFGRRVVVPLALEFMQQNPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI L  +++  D+     D A+RL K +  SSL  R L        A+P YLK    P 
Sbjct: 121 VQIDLSFEDRYTDLVASGIDVALRLGK-LADSSLGARTLGVNPWVLVASPTYLKKHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  + +  +    +  +         +  P    L+ N+  +++       GI
Sbjct: 180 RPSDLKEHATLIYSSVQGNDL--WRLRNASGEAVSVPVTGRLRSNNLSALLAAARSHMGI 237

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDW 297
           A LP Y+  ++     +V +++    P   ++  YP       K++AF  F+  +  ++W
Sbjct: 238 AALPWYVAHESLKAARVVEVLKTCRLPEQEIHAVYPSPRLVPQKVQAFIAFLQGRFGKEW 297


>gi|288960796|ref|YP_003451136.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288913104|dbj|BAI74592.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 315

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 140/294 (47%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L V   V  SGS + AAE+L LS S+ISR+I+ +E  +G +L  R  R + LT+
Sbjct: 1   MDRLDDLTVLVEVVDSGSLSAAAERLGLSASAISRRIAQMENRLGTRLLARTTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +   L+  +  L E+  +P G LR+   +  GQ  +   L  +L  +P 
Sbjct: 61  AGATFCLRARAILAALDEAEQSLTETGEEPRGTLRVTMPVMFGQMRVAPLLPSYLRRHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++ L ++   +  +  D AIR  + +  S+LI R+L  +     A+P YL+    P 
Sbjct: 121 VSLEVSLSDRVQRLVDEGLDLAIRTGR-LADSTLIARRLRPLRRSVVASPDYLERRGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L +H+ +T   L      ++ +L    R +  P     Q ++   +    V G G+
Sbjct: 180 SPADLARHDCLTL--LSGSGRPEWEFLVGERREVLRP-AGGFQADNLWMLRHAAVGGLGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A L D+IV+++     LV ++ D+      ++  YP     + K+++F   +  
Sbjct: 237 ARLADFIVEEDIRAGRLVAVLTDLEVMDEAIHAVYPATRHVSPKVRSFIEHLLA 290


>gi|170721262|ref|YP_001748950.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759265|gb|ACA72581.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 294

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 137/293 (46%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  +GSFT AA++L +S+ S+SR++  LE  +G++L  R  R L  T  G 
Sbjct: 4   YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEGRLGVRLLNRSTRRLDATPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++  + ++   +    G LR++  +      L   L EFL L+P + +
Sbjct: 64  HYYQSALRLLGEVQQVEHDISGQAQALRGTLRLSAPLSFAMAHLGCLLTEFLRLHPQVDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++  +     A+P YL+    P    
Sbjct: 124 EVDLSDRPVDLIGEGYDLALRIGA-LEDSSLIARRIAGVERVYCASPAYLQARGVPQRPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H+ + +G       +         R         ++ N+   +    +   G+  L
Sbjct: 183 MLAEHDCLPYGHSRQVQWQ----FTQGGRSQAIAVAGRMRANNGELLRDAAIAAMGVTYL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +IV     +  LV +++D   P+  +   YP+  +    ++ F  F+  + 
Sbjct: 239 PTFIVGQALADGRLVSVLQDWTPPALQLSAVYPQHRQVARPVQGFVEFLRERL 291


>gi|222085196|ref|YP_002543726.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722644|gb|ACM25800.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 307

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 135/296 (45%), Gaps = 7/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A  GSF  A   L LS S++ + ++ LE ++G++L  R  R + LTE
Sbjct: 1   MDRLSGLNAFVRSADLGSFAAAGRVLGLSASAVGKAVTNLERQLGVRLMQRSTRSIRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   H     V   LE  Q  L ++   P G+LR++  I +  + L   L EF++ YP+
Sbjct: 61  EGRLFHERCRRVLDDLEDAQASLAQAVAVPRGRLRVSVPI-VSYHFLLPVLPEFVVRYPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +  +++ +D+  +  D AIR    +  S L+ R L    M   AAP YL+    P 
Sbjct: 120 VELDIDFNDRIVDMIEEGVDVAIRSGD-LPDSRLMSRTLRPFQMLLCAAPAYLERHGVPD 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + LD H  I F       ++++        P    + + L  N+  ++    + G GI
Sbjct: 179 CPRALDDHLAIRFRFPNSGKLQNWPLTLPDGGPELHMK-TALSCNNMEALRGAVISGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +PD++ +       L  +++D I      +  +P     + K++ F +F+  + 
Sbjct: 238 GCMPDFLARSPLAEGKLRTVLDDHIDGPGHFHLLWPSNRHLSPKVRVFVDFLSERL 293


>gi|85703096|ref|ZP_01034200.1| regulatory protein, LysR:LysR, substrate-binding [Roseovarius sp.
           217]
 gi|85672024|gb|EAQ26881.1| regulatory protein, LysR:LysR, substrate-binding [Roseovarius sp.
           217]
          Length = 306

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 145/294 (49%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  VA +GSF  AA +L LS  +++R ++ LE  +G ++F R  R +T+T+ G 
Sbjct: 4   LHEIEVFIAVAEAGSFARAATRLRLSPPAVTRAVAALEDRLGARVFNRTTRSVTITDVGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       V   LE+ + E    +  P G L +  ++  G+  L   + EFL LYP + +
Sbjct: 64  RFLESARRVVSDLESAEREALGEAATPQGHLTVTASVTFGRAALAPLVCEFLALYPRVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L ++ +++  +  D A R+  P+  S L+ RK+ T+H    A+P YL     P++  
Sbjct: 124 SVLLLDRVVNLVEEGVDVAARIG-PLPDSGLMARKVGTVHRILVASPAYLVARGVPMTPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H ++ F  L+P     +   + +      PR    ++N   + ++  VLG GI + 
Sbjct: 183 DLRDHAVVGFTGLMPNREWRYVNGSKIGSVALHPR---FEINDAATAIEAAVLGHGITIA 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y+V D      LV +++    P   V+  YPE      K++AF +F   + +
Sbjct: 240 LSYMVADLIHAGRLVPVLQAYTLPPQPVHLVYPETRLVAPKIRAFLDFAAPRLK 293


>gi|291616377|ref|YP_003519119.1| YafC [Pantoea ananatis LMG 20103]
 gi|291151407|gb|ADD75991.1| YafC [Pantoea ananatis LMG 20103]
          Length = 312

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 136/296 (45%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+VF  V  SGSF+ AAE L ++ S++SR I  LET++G+ L  R  R L LT
Sbjct: 1   MKASSEELKVFVSVVESGSFSRAAETLEMANSAVSRTIKKLETKLGLALLTRTTRNLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +  +        +   + EL ES   P G LRI     +  +L+   +K F   YP
Sbjct: 61  QEGERYFQQVQHFLQVMTAAENELIESRDVPKGLLRIDAATPVILHLIMPMIKSFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + LI     I++     D AIR    +  S L  R L   +    A+P YLK    P
Sbjct: 121 DIALSLISSENFINLIERKVDVAIRAGS-LTDSGLRARLLFISYRRLIASPDYLKKHGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L   +LD H  + F D          W    +        S L  NS  +I Q C+ G+G
Sbjct: 180 LRAADLDNHQCLGFIDAPRLN----RWPVACEGGELYGIRSELDSNSGETIKQLCLEGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA L DY+V    +  +LV IM D   P        Y   L  T +++AF +F+  
Sbjct: 236 IACLSDYMVHKEIEEGSLVEIMADQRLPVEMPFNAVYYSDLGVTQRVRAFIDFLSE 291


>gi|254695312|ref|ZP_05157140.1| LysR family transcriptional regulator [Brucella abortus bv. 3 str.
           Tulya]
 gi|261215682|ref|ZP_05929963.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|260917289|gb|EEX84150.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
          Length = 306

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 126/294 (42%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  V  +GS + AA  L LS + +S+++  LE  +G  L  R  R + LT
Sbjct: 1   MMSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTSLLQRTTRQIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 61  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P
Sbjct: 121 DLTVNMQLSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI       LQ NS   + +  + G G
Sbjct: 180 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPTGPLQTNSSEIVREAVLSGLG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 234 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|15598826|ref|NP_252320.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9949789|gb|AAG07018.1|AE004783_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 302

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 136/291 (46%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA +G FT AAE++ +S S ISRQ++ LE  +  +L YR  R ++L+E G 
Sbjct: 4   WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     + + S +P G LR+   +  G+  +   +  F+  YP +++
Sbjct: 64  TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  S L+  +L    M+  A P YL+    P S  
Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCATPEYLRRHGTPQSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL + N +     +   +ED        R          + NS  +++   + G G+  L
Sbjct: 183 ELGQFNCLIGSSDLWSFLED-------GRETQHRVQGNWRCNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V ++     L  ++E    P+  V+  YP+    + K++   +++  
Sbjct: 236 PDYYVIEHLRSGRLASLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYLKE 286


>gi|332559395|ref|ZP_08413717.1| Transcriptional regulator, LysR family protein [Rhodobacter
           sphaeroides WS8N]
 gi|332277107|gb|EGJ22422.1| Transcriptional regulator, LysR family protein [Rhodobacter
           sphaeroides WS8N]
          Length = 301

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 139/295 (47%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F +V   G FT AA ++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFAMVVDQGGFTDAARKMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V          +      PSG LR++   D G  LL   L EFLL YPD
Sbjct: 61  IGLAYYDRARRVLTDAREADALVTSMQTAPSGHLRLSVATDFGVALLTPILAEFLLDYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+  ++  +  D AIR+   ++ SSL  RKL        A+P YL+    P+
Sbjct: 121 ITVTMVLNNRSAELISEGFDMAIRVGD-LEDSSLRARKLTETTRRMIASPGYLQRHGRPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L  H L+         +  +  L+    P        L VN   S+++  V G GI
Sbjct: 180 KIDDLTDHRLLYHSTQAHGNV--WRLLSPSGEPRQVRAPGFLTVNDGQSLLKAAVSGLGI 237

Query: 242 ALLPDYIVKDNPN--LV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP+++  +     LV  ++ D+   +  ++  YP       K++AF +F+  +
Sbjct: 238 AHLPEFLFAEAMRAGLVEEVLPDLPVETLGIHAIYPAGRFTQPKVRAFIDFLVRR 292


>gi|254252031|ref|ZP_04945349.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
 gi|124894640|gb|EAY68520.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
          Length = 301

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 136/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ EL +HN +    L     +   W    D  +   R+   ++ +    + ++C+ G G
Sbjct: 180 TLAELARHNCLA---LAANANQQRGWTFQEDGKVVSIRVNGTMECSDGAVLHEWCLAGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +++
Sbjct: 237 LAWRSWWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDYL 289


>gi|104783724|ref|YP_610222.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95112711|emb|CAK17439.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 301

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 141/292 (48%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V   GSF+ AA Q  LS + +SRQ+  LE E+G +L  R  R L LTE
Sbjct: 1   MDQLSAMQTFRRVVDLGSFSAAATQAGLSHTVLSRQVKNLERELGTQLLNRTTRRLQLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +R   ++  +++   +EL E   +P+G LR+      G+  L   L +F+  +  
Sbjct: 61  AGALFYRHCVQILEQMQAMTLELSEHQQQPTGTLRLGVATAFGELELGRWLPDFVERHER 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L   ++ +D+  +  D  +R+   +  SSL+ RKL T  +   AAP YL+    P 
Sbjct: 121 LQIELNCSDRFVDLLEEDIDVCLRVTDHLPDSSLVARKLATSEVLLVAAPAYLERHGCPS 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L  H L+ +  L+       +  A     +  PR   L  NS +++    + G GI
Sbjct: 181 TPDALAAHPLLGYSQLLHPQRLQLHGPAGETTDVVMPR--RLSANSPMALRAAAIGGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A    +IV D   +  L  ++E    PS  +Y  YP++     K++A  +F+
Sbjct: 239 ASFDRFIVHDALLDGRLTPVLEGWSLPSRALYAIYPQSRYLAPKVRALLDFV 290


>gi|187479222|ref|YP_787247.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115423809|emb|CAJ50360.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 301

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 139/287 (48%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF  AAE+  L++S ++RQI+ LE + G++L  R  R L LT+ G   +
Sbjct: 1   MQTFARVVELGSFAAAAERAGLARSVVTRQIAYLEEKYGVRLLNRTTRKLNLTDAGRAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L    + L+  S +P+G+LRI+  +  G   L   + ++L  YPD+ I L 
Sbjct: 61  ERIRPLLSELADIDLALRAQSSQPTGRLRISAPVSFGVLHLGPAVADYLQRYPDVVIDLD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  D  D A+R+  P+  SSL+ R L    +   AAP YL     P   + L 
Sbjct: 121 LNDRVVDLVQDGYDVAVRIG-PLTDSSLVARPLAPQTLQVCAAPSYLARHGTPAQPEALR 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +           +W+   D      RI+  ++ N+   +    + G GI L PD
Sbjct: 180 QHQCLHYSYASGGT----DWVFEKDGQTTLVRITPSMRANNGDVLRTAALAGHGIILQPD 235

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++ D+     LV ++ D   P  T+   YP     +  +++F   +
Sbjct: 236 FLIGDDLRAGRLVPVLPDYRRPVITMMMVYPHRRLLSPTVRSFVEHL 282


>gi|59711484|ref|YP_204260.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|197335343|ref|YP_002155639.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|59479585|gb|AAW85372.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
 gi|197316833|gb|ACH66280.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 301

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 152/295 (51%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +   V  SGSFT AA  L +++S++SR+++ LE  +G+KL  R  R L LT++
Sbjct: 2   MDLNNITLLNQVVDSGSFTQAATNLGMTKSTVSRKLAELEEHLGVKLITRSTRKLGLTQE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++ + +V   ++ T++EL  +     G L +A  +++G N++   +  FL  YP++
Sbjct: 62  GEIFYQASVKVLDIMQQTELELTANQNLIRGHLNLAMPVEIGHNVMSDYINSFLKHYPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L + N+++DI  D  D  +++ + I  SSL+ R +        A+P YL N     +
Sbjct: 122 SINLEMTNREVDIIGDNIDLYVQIGE-INDSSLVARTIDFSERIIVASPEYLNNYGYIQT 180

Query: 183 IQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L   H+ I   + +      FN    VD+ I       L+VN+  +    C+ G GI
Sbjct: 181 PEDLQAPHHQIRVVNAVKVPNLYFN---QVDKAIRVNLPYRLKVNTVTACKSACLSGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP++I +++     L+RI+ D   P   +   +P+      +L+AF + +  +
Sbjct: 238 ASLPEFICREHINNGELIRILPDWDLPRVAISLVFPQNKLLPKRLRAFIDHVLER 292


>gi|146311693|ref|YP_001176767.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145318569|gb|ABP60716.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 301

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 134/291 (46%), Gaps = 8/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V  +G+FT AA+ L+L  +++S+ +  LE  +G++L +R  R +  T +G   
Sbjct: 6   AMRAFTRVVETGNFTRAADSLNLPNATLSKLVKSLEAHLGVRLLHRTTRRVVATPEGQDY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   S V   +E        S  +P G LRI       + +L   L +FL  YP+I+I L
Sbjct: 66  YEKASRVLIDIEEIDTSFSASQRRPKGYLRIDIGGSTAREVLIPALPDFLKRYPEIKIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+     DC IR   P+  SSLI R +    M   A P YLK    P    EL
Sbjct: 126 GVSDRPVDLISGNVDCVIR-GGPLNDSSLIARHIGDATMVTCATPGYLKAAGVPAYPDEL 184

Query: 187 DK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
              H L+++  L P     F +   ++  + E +    + VN   + +   V G GI   
Sbjct: 185 RNGHKLVSY--LSPLTGRAFPFRFIIEGEMRELKTQHHIGVNESNAHLAAAVAGMGIIQT 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             Y  KD   +  LV I++     S+  +  YP+    T +L+ F +++  
Sbjct: 243 FCYAAKDALKDGTLVEILQAWRPASYPFHVVYPQNRHMTHRLRVFIDWLTE 293


>gi|170697720|ref|ZP_02888807.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137335|gb|EDT05576.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 349

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLAEHPALSLPT---EYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|326410358|gb|ADZ67422.1| transcriptional regulator [Brucella melitensis M28]
          Length = 305

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 12/294 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LT
Sbjct: 1   MS-SLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 60  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     A P YLK    P
Sbjct: 120 DLTVNMQLSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVATPRYLKERGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI       LQ NS   + +  + G G
Sbjct: 179 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPTGPLQTNSSEIVREAVLAGLG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 233 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 286


>gi|115352689|ref|YP_774528.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282677|gb|ABI88194.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 294

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 136/290 (46%), Gaps = 9/290 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S+I ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  +++  + EL  S+  P G+LR++        LL   L +F+  YP+I++ +   
Sbjct: 69  CRRVIAEIDAAEQELTHSAEAPRGRLRVSLPT--IGTLLLPLLADFMAAYPEIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R L     H  A+P YL+    P +  +L +H
Sbjct: 127 DRLVDVVEEGFDAVLRTGQP-TDSRLSSRLLGHFGQHLVASPDYLERHGTPRTPTDLARH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +    P   +   W     R    P +   +  NS  + + +   G GIA LP++ 
Sbjct: 186 RCLHY--RFPSSGKLEIWPLRASRSGTPPAVPVSMVSNSAETRLCFARRGLGIACLPEFF 243

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V+   D+  L  ++ + I      Y  +P     T KL+AF + +    R
Sbjct: 244 VRDALDDGTLRAVLAEHIVSRTPFYVLWPSGRHPTPKLRAFVDHMAEHLR 293


>gi|134297380|ref|YP_001121115.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134140537|gb|ABO56280.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 349

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLAEHPALSLPT---EYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|302188178|ref|ZP_07264851.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae 642]
          Length = 322

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   + + +  F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++
Sbjct: 1   MELHNLNDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSM 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G  L+     V   L+  +  L      PSG+LRI+  + LG+  +  +++  L  +
Sbjct: 61  TDEGQILYERCVGVLQDLDDVEDALAFRRSTPSGRLRISLPVALGRLHVLQHIECCLNDW 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +   ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    E
Sbjct: 121 PSLSVDITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHDE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + ++L +H  + F         +F         +       LQ++S  S+ Q  + G 
Sbjct: 181 PKTPEDLSEHQCLHFVSGGRLLPWNFR---VNGSSVPVTHGGRLQMDSAESLRQSAIAGL 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GIA LP Y+V D+     LV+++      +  +   YP     + K++ F +
Sbjct: 238 GIATLPSYVVNDDLRSGKLVQLLAGYAEAAEPIRVIYPSKRHLSPKIRLFID 289


>gi|107024063|ref|YP_622390.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691149|ref|YP_836772.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170734480|ref|YP_001766427.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105894252|gb|ABF77417.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649238|gb|ABK09879.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169817722|gb|ACA92305.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 349

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLAEHPALSLPT---EYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|169796296|ref|YP_001714089.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|215483754|ref|YP_002325979.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB307-0294]
 gi|301511457|ref|ZP_07236694.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB058]
 gi|332851623|ref|ZP_08433572.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332866512|ref|ZP_08437054.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149223|emb|CAM87105.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|213988425|gb|ACJ58724.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB307-0294]
 gi|332729851|gb|EGJ61185.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332734591|gb|EGJ65700.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 306

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L++F  +   GSF+ AA+QL++ +++ S  I  LE+ +  +L  R  R +  + 
Sbjct: 1   MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPD
Sbjct: 61  DGQAFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHQLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  DC +R  + +  S+LI R L+ +     A+P YL     P 
Sbjct: 121 IELVISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLIDMPQVICASPDYLNKHGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + F          F  L    +       S + VN   + +   + G+G+
Sbjct: 180 QPEDLLSHYCVNFFSTSGGRNYPFE-LMVNGKKQDYFLKSWIAVNDAENYVLSALQGAGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V +   N  LV+++ +   P  +V   YP+  + + +++ F  ++  
Sbjct: 239 IQVPRYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVFVAWLSE 292


>gi|330502898|ref|YP_004379767.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328917184|gb|AEB58015.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 306

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 132/293 (45%), Gaps = 12/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D   +F  V    SFT AA  + + +S++SR+I+ LE  +G++L  R  R L LTE 
Sbjct: 1   MGLDDALIFTRVVECHSFTQAATSMGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++       +  + +   +PSG LRI + I+ GQ  L   L EF+  YP I
Sbjct: 61  GQAYYERCRQIMLDFAEAEQAVMQLQREPSGLLRITSPIEFGQLFLGRVLGEFMRQYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++ L ++ +D   +  D AI++ +P Q S+LI RKL        A+P YL     P S
Sbjct: 121 DAEVELTSRSVDPLEEGVDIAIQVGQP-QDSTLIARKLFESGRRLCASPAYLAAHGTPRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL+ H  I      P+            R         +  N+     +  + G+GI+
Sbjct: 180 VAELEGHRAILLQHDAPRYWPLLGEHLPCQR--------VMTCNNITFAREATLAGAGIS 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP  I ++   +  LV ++ +   P   VY  YP       K+K F +F+  
Sbjct: 232 GLPVMISEEAVRSGRLVELLPEARLPVGEVYAIYPSRRFQAMKVKTFLDFLIA 284


>gi|206560483|ref|YP_002231247.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198036524|emb|CAR52421.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 301

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 139/293 (47%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LRI+     G+  +   + EF + +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSVGHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P+
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ EL +HN +    L     +   W    D  +   R+   ++ +    + ++C+ G G
Sbjct: 180 TLAELARHNCLA---LAANANQQRGWAFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V ++     LV +++    P   ++  +P+      +++ F +++
Sbjct: 237 LAWRSWWEVGEDIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDYL 289


>gi|239833393|ref|ZP_04681721.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239821456|gb|EEQ93025.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 303

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 130/294 (44%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G+FT A+  L++ +++IS  I GLE  +G KL  R  R + +T 
Sbjct: 1   MDQLSAMRAFLRVVETGNFTRASASLNMPKATISNLIQGLEAHLGTKLLNRTTRRVLVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   + +   L      L  +   P G+LR+     +   ++   L EF   YPD
Sbjct: 61  DGALYYERAARLLADLAELDGSLSSAQTLPKGRLRVEMAGAVANLIIIPALMEFHQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ +D   +  DCAIR+ + +   SLI R++  +H  A A+  YL  C  PL
Sbjct: 121 IQIDLGVSDRPVDYVAENVDCAIRIGE-LADQSLIARRIGDMHFIACASAEYLDRCSTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
              +L + +    G   P   +   +         E      +  N   + +     G G
Sbjct: 180 HPSDLSR-DCTVVGYFRPSTGQQMPFRFRKGTEEIEVNGRYVVAANESTTYLAAARAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +   P ++VKD+     L  ++++       +Y  YP     + +L+ F +++ 
Sbjct: 239 VVQAPLFMVKDDIASGTLRPVLQEWEIEPTPIYLVYPPNRHLSNRLRVFADWVV 292


>gi|87119883|ref|ZP_01075779.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86164585|gb|EAQ65854.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 297

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 130/291 (44%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L++F  VA + + + A  +L LS    S  I+ LE  +G+KL +R  R ++LTE+
Sbjct: 1   MNNEHLKLFIRVAATNNISLAGSELGLSPPVASMHINKLEESLGVKLIHRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +V + + + +  +   S  P G +R+      G+  +   LK FL L P +
Sbjct: 61  GREFLPHAEDVINAVNSAKASVGAGSFTPQGTIRVTVASSFGRMHVVPALKAFLALNPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L   +  +D+     D AIR    +  SSL+ RKL        A+P Y+    EP +
Sbjct: 121 KVDLRQSDSIVDMVEGGFDVAIR-NASLNDSSLVARKLAADRRIICASPEYIHEYGEPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L  HN I    +      D+    T    +       ++ ++  S    C+ G GI 
Sbjct: 180 PEALLAHNCINLIGI------DYWDFKTPQGNVRIKPKGSMRSDNGESTRDTCIDGMGIT 233

Query: 243 LLP---DYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNF 289
           +      Y   +   LV++++D    S   ++  YP +     K++AF +F
Sbjct: 234 ISSVWCAYQALEEGKLVQVLKDYPLASDTAIWAVYPSSRLLAPKVRAFIDF 284


>gi|238893200|ref|YP_002917934.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545516|dbj|BAH61867.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 301

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 135/294 (45%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++ +F  V  SGSF+ AAEQL  + S++SR +  LE+++G+ L  R  R L+LT
Sbjct: 1   MRATSEEIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R    V  ++   + +L E+   P G LR+     +  + L   +K F   YP
Sbjct: 61  EEGERYFRRMQVVLQEMAAAENDLLETRTTPRGLLRVDAATPVMLHFLMPLVKPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P Y+     P
Sbjct: 121 EMTLSLVSSETFINLIERKVDVAIRAG-TLTDSSLRARPLFTSYRKIVASPDYVARYGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H+ + F + +        W  +          + +  NS  ++ Q C+ G+G
Sbjct: 180 QHPSDLKQHHCLGFTEPVSLN----TWPVSCCDGQLLEIEAAVSSNSGETLKQLCLTGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L DY+V     +   V ++ D   P        Y      +  ++AF +F+
Sbjct: 236 IACLSDYMVDKEIASGEFVELLADKRLPVEMPFSAVYYSDRAVSTHIRAFIDFL 289


>gi|307130652|ref|YP_003882668.1| LysR family transcriptional regulator [Dickeya dadantii 3937]
 gi|306528181|gb|ADM98111.1| Transcriptional regulator, LysR family, in glycolate utilization
           operon [Dickeya dadantii 3937]
          Length = 304

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 142/298 (47%), Gaps = 15/298 (5%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M F  D+L     F   A +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L
Sbjct: 1   MDFRMDRLLLMTCFVRTAETGSFSAAGRDLGLGQPNVSRHVATLEEHLQTRLLHRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT +G + +     +   +E ++   +E +V P+G LR+A    L    L  ++ +FL 
Sbjct: 61  SLTPEGERYYLEARRILEAVEESESSFRE-NVTPTGLLRVACPTALAHTFLVPHIPDFLE 119

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP++ ++L ++++ I++  + A+ AIR+   ++ S++  R+L        A+  YL   
Sbjct: 120 RYPELTLELQINDRYINLVDEGAELAIRIGH-LEDSAMRARRLGMYERVCVASNKYLAKH 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P + ++L KH+ + +  L       F       + I  P    L+VNS  ++ ++   
Sbjct: 179 GTPNTPEDLKKHDCLIYTLLTTGATWRF-------QDINVPISGRLRVNSPEAVQKFVNA 231

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GIA  P+++ +   +N NL  ++ D   P   +   Y        +   F +F+  
Sbjct: 232 GVGIAQGPEWLFEEGLENGNLQLLLTDYTAPPVPIQAVYVANRLLPKRAIVFMDFVAE 289


>gi|149191418|ref|ZP_01869669.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148834767|gb|EDL51753.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 299

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V  +G+F+  AEQ +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVVETGAFSRVAEQNNLTNSVVSKRIARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  LVHGAKNVKQATQEAMESVSGYGENISGHIKMSVPSISGDLILADAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVDGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNSKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +HN + +        E   W    ++     R+S     ++  ++ +  + G GIA +
Sbjct: 183 LTQHNCLQYAYQTTGASE---WEFKANKGNYIVRVSGSFSTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V  +     LV I  D +     +Y  YP   +   K++     I  +
Sbjct: 240 PRCLVYHDIRNGQLVDIFPDQVGKRLGIYAVYPFTRQPPNKVRLLIEHIRTR 291


>gi|70730282|ref|YP_260021.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344581|gb|AAY92187.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 302

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 142/294 (48%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+VF  V +SGS   A E+L LS S++ + ++ LE  +G++L  R  R ++LT++G
Sbjct: 3   NLNGLQVFVSVVQSGSLVGAGERLGLSASAVGKALARLEQRLGVRLLNRSTRRISLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +     +  +++  + EL   S KP G+LR++    +G  +L   L EF   YPDI+
Sbjct: 63  ALFYERGQRIVAEVQEAEAELARISDKPRGRLRVSLP-AIGYRMLLPILPEFSARYPDIE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L  +++ ID+  +  D  IR  + +  S L  R L         AP Y      P + 
Sbjct: 122 LDLDFNDRLIDVIAEGVDAVIRSGE-LPDSQLKSRNLGPFGFVLVGAPGYFARRGTPRTP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L++H  + +       ++ ++ L   D        S L  N+  S++     G GIA 
Sbjct: 181 RDLEQHACLRYKFPGGSLLQQWS-LRLPDGAPPLVLGSALTSNNLESLIHASTQGLGIAY 239

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +P+++V     + +LV +++D           +P +     KL+ F +F+  + 
Sbjct: 240 VPEFVVCGALADGSLVAVLDDYQQERGKFSILWPSSRHLLPKLRVFVDFLGERL 293


>gi|91224080|ref|ZP_01259343.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91190991|gb|EAS77257.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 300

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 128/291 (43%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D +++F  +A + + + A ++L LS +  S  I+ LE  +G++L +R  R ++LTE+
Sbjct: 1   MNIDHVKLFVRLASTHNISMAGQELGLSPAVASAHINKLEDSLGVRLVHRTTRKVSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        EV   +E  +  +      P+G LRI  +   G+  +   LK F+  YP +
Sbjct: 61  GQAFLPHAEEVLATVEAARGAVGSGQSAPTGVLRITASATFGRLHIVPALKGFMARYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +     +  +D+     D AIR+ + ++ SSL+ RKL        A+P Y++    P  
Sbjct: 121 TVDCRFSDSIMDLVEGGFDVAIRVAE-LKDSSLVARKLAPDRRIIVASPDYIEQFGRPNK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H  I    +            T D           + ++  ++    V G GI+
Sbjct: 180 PQDLTNHECINLVGMNNWS------FNTKDGMFNVRTSGRFKTDNGDAMRDATVNGLGIS 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNF 289
           +   + V     +  LV ++ED        ++  YP +     K++AF ++
Sbjct: 234 INSVWSVYQELQSGQLVEVLEDHPLAMDAGIWAVYPSSRLIAPKVRAFIDY 284


>gi|207722118|ref|YP_002252556.1| hypothetical protein RSMK02451 [Ralstonia solanacearum MolK2]
 gi|206587292|emb|CAQ17876.1| hypothetical protein RSMK02451 [Ralstonia solanacearum MolK2]
          Length = 297

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 129/296 (43%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +G+FT AA QL +S   + + +  LET +G +L  R  R  +LT+
Sbjct: 1   MDKLRGMETFVAVVDTGNFTEAAVQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  ++   +  ++    +PSG LR++     G  ++      F   +P 
Sbjct: 61  AGRVFYDDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+ +D++ +  D A+R+  P+  + L+ + L    M   A+P YL    +P 
Sbjct: 121 VRVELDLSNRMVDLADEGFDLAVRIG-PLGDADLVAKPLCAYRMAICASPDYLARHGQPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  ++    +     +   L+  D P           N    +    + G+G+
Sbjct: 180 TPADLPAHRCLSH---MVWNRRNAWQLSGWDGPTPWRDDPAFSCNDGHGLRMAAIAGAGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L P+ +V ++     LVR+++        ++  Y +  +   KL  F + +   A
Sbjct: 237 LLQPEVLVAEDLASGRLVRVLQPYAPEPRPIHLVYRQDRRPLPKLTGFVDHLLQHA 292


>gi|121604202|ref|YP_981531.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593171|gb|ABM36610.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 340

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 137/296 (46%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F  V  +G+FT AA  + L + +++R I  LE E+  KL  R  R +T+T 
Sbjct: 1   MDKFSAMQAFVRVVEAGTFTKAAYSMGLPKPTVTRLIQELEKELDTKLLNRTTRKVTVTV 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   S +  ++   +  +  +   P GKL++     LG  ++   L +F   YPD
Sbjct: 61  DGAAYYEQASRLLGEVHELEASMSRAKASPRGKLKVDIPSSLGMAVIIPALPDFYARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ++L + ++ +D+  +  DC IR    I   S++ R++   ++ + A+P YLK    PL
Sbjct: 121 IQLELGVSDRPVDLIAENVDCVIR-GGEITDQSMVARRIGEFYIMSCASPAYLKRHGTPL 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGS 239
              ELD  H  I +  +  +  + + +    D  + E      + VN   + +   + G 
Sbjct: 180 HPSELDDAHYSIRY--VSGRNGKLYTFKMHKDGEVVEVGGRHQVSVNDSNAGVAAGLAGL 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+     ++V+D+     L  +     T    ++  YP     + K++ F +++  
Sbjct: 238 GVLHTLSFLVQDHISNGTLEPLFSGWCTEPKPIHVVYPPNRHLSNKVRVFVDWVAE 293


>gi|93006367|ref|YP_580804.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis
           K5]
 gi|92394045|gb|ABE75320.1| transcriptional regulator, LysR family [Psychrobacter
           cryohalolentis K5]
          Length = 301

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 141/295 (47%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  +  +GS T AAEQL++++S++SR++  LET +G +L  R  R   LT+ G 
Sbjct: 4   LEDMAMFVRIVEAGSITKAAEQLNIAKSAVSRRLKDLETRLGSQLISRTTRQSNLTQAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++  + +  +++    E   +  +  G L++   +  G   L   + E+   +P++  
Sbjct: 64  QYYQKVNNILSEVDALNEETSGAPTRIEGILKMTAPLSFGLMHLNDVIDEYANQHPNLNF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++  D+  +  +  IR+R+ +Q SS   ++L  I     A+P YL     P +++
Sbjct: 124 ELDFSDRHTDLVEEGFELGIRIRE-LQDSSYQAKRLALIRYTLCASPEYLSKMGTPTTLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +  KH  + +G      +E  +      +       S ++VN+   + +  V G GIA L
Sbjct: 183 DFAKHEFLQYGLNKSSTIELID---EQGKKHQVAINSKIKVNNGDFLREMAVKGHGIAFL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P++I      +  LV IM+    P+   Y  YP+    + + +   +FI  +  D
Sbjct: 240 PNFITYKTLASGALVPIMQQYQLPTLNAYAVYPKNRFLSQRCRYLIDFIAERFGD 294


>gi|270261837|ref|ZP_06190109.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043713|gb|EFA16805.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 302

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 142/296 (47%), Gaps = 7/296 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +    +  F    ++GS+THAA  L L++S+I + I  LET +G++L  R  R L+L
Sbjct: 1   MEINSIGDIAAFVAAVKAGSYTHAAGSLGLTRSAIGKSIVRLETRMGVRLLNRTTRSLSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G  +     ++   LE     +     KP+G LR++  +  GQ  +   L  +L  +
Sbjct: 61  TDEGRVMFDRCRQILDDLEEVDAAMAMRRGKPTGTLRLSAPLSFGQRHILPILDVYLKKW 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+++ ++   ++ +D+  +  D AIR+ +P   S ++ R + + H+   A+P YL +   
Sbjct: 121 PELRAEVSFSDRFVDLIEEGFDIAIRIGEPRDDSRILTRTIASQHIVTCASPEYLSSRGV 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H+ I       +    F   AT +          L ++S  ++    + G 
Sbjct: 181 PETPADLTRHDTIFLLSAEKRRSWRF---ATPEGTFVYEGPGRLNLDSSEAMRASAIAGF 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP Y++ ++     L+ ++E+   P   V   YP     + +++AF + +  
Sbjct: 238 GIVHLPTYLLGEDLRSGKLIPVLEEFPFPPEPVRLIYPSKRHLSPRIRAFIDLLVE 293


>gi|116051627|ref|YP_789534.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586848|gb|ABJ12863.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 302

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 136/291 (46%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA +G FT AAE++ +S S ISRQ++ LE  +  +L YR  R ++L+E G 
Sbjct: 4   WEGLDEFVAVAETGQFTAAAERMGVSSSHISRQVARLEERLQTRLLYRSTRRVSLSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    +     + + S +P G LR+   +  G+  +   +  F+  YP +++
Sbjct: 64  TFLQHCQRLQDARDEALRAVSDLSAEPKGLLRMTCAVAYGERFIVPLVNAFMADYPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL + +  S L+  +L    M+    P YL+    P S  
Sbjct: 124 DIELSNRQLDLLHEGFDLAIRLGR-LSDSRLVATRLAPRVMYLCTTPEYLRRHGTPQSPT 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL + N +     +   +ED        R          + NS  +++   + G G+  L
Sbjct: 183 ELGQFNCLIGSSDLWSFLED-------GRETQHRVQGNWRCNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY V ++     LV ++E    P+  V+  YP+    + K++   +++  
Sbjct: 236 PDYYVIEHLRSGRLVSLLEGHQPPNTAVWALYPQQRHLSPKVRQLVDYLKE 286


>gi|313498962|gb|ADR60328.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 292

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 136/295 (46%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D +R+F  V   GSF+  A +L++ Q ++S+Q+  LE  +G  +F R  R L LT
Sbjct: 1   MDL-FDSMRIFVRVVERGSFSAVARELNMGQPAVSKQVRALEQYLGGAVFARSTRHLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +QG + +    E+  +LE           + +G LRIA  +  G+  +   +  FL  +P
Sbjct: 60  DQGQRFYSHCQEILSQLEHATRSFASGQEQIAGPLRIAAPVSYGRLCIAPLIGAFLQRHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QI L L++ + D+ M+  D AIR+   ++S  L+   L T     YAAP YL    +P
Sbjct: 120 DVQIDLRLNDYNEDLLMENIDLAIRIG-VVKSEGLVAVPLGTSTRRVYAAPAYLDRHGQP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  HN I F  L       F         +       +  N+  +I +  + G G
Sbjct: 179 REPAELAGHNCIAFTLLEHYDRWHFT---HRGEALEVAIKGNVTSNNSEAIREMVLGGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I+L P ++     +   +  ++++  T +  V   +    + + +  AF +F+  
Sbjct: 236 ISLSPQWLFAADFEQGGVCSLLDEYQTTALPVSAVFSRERRRSARTMAFIDFLRE 290


>gi|58039186|ref|YP_191150.1| LysR family transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58001600|gb|AAW60494.1| Transcriptional regluator LysR family [Gluconobacter oxydans 621H]
          Length = 305

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 138/292 (47%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D LR+F  VA SGSFTHAA+ L + +S++S  +  LE  +G +L  R  R + LT+
Sbjct: 1   MDRIDLLRIFIRVAESGSFTHAADTLQMPRSTVSTAVQELENRLGTRLLARTTRSVRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +    +    E  +   +  S +  G +++     +G+ ++   L EFL  YP 
Sbjct: 61  DGRMFQQTALRLLGDFEDAENRFRLHSSQTRGHVKVNLPSRIGRLIVAPALPEFLDRYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L + ++ I+++ D  DC +R+  P+Q SSLI RKL  + +   A+P YL     P 
Sbjct: 121 LDVELGMTDRSINLAEDGTDCVLRVG-PLQDSSLIGRKLGLLPVFNVASPSYLAQHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + +       +ED+ W     R    P    + VNS    +  C+ G G+
Sbjct: 180 NPADLSAHQAVLYASPTTGRIEDWEW-EHDGREDSRPVRGRVTVNSAEGAVACCLAGLGV 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP Y V  +     LV I+         +   YP     + +L+ F  ++
Sbjct: 239 AQLPAYDVLPHIRRGELVDILPQWRAAPLPMTLLYPHRTHLSRRLEVFTEWL 290


>gi|319945336|ref|ZP_08019598.1| LysR family transcriptional regulator [Lautropia mirabilis ATCC
           51599]
 gi|319741906|gb|EFV94331.1| LysR family transcriptional regulator [Lautropia mirabilis ATCC
           51599]
          Length = 312

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 134/302 (44%), Gaps = 10/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +GSF  A   L +S++++SR ++ LE  +  +L  R  R L+LT 
Sbjct: 1   MDKIQAMSTFVAVVEAGSFVKAMSVLGISKAAVSRHVAELEQHLETRLLQRTTRRLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +      EV   ++  + E++  S +  G+LRI      G   L      FL   P 
Sbjct: 61  EGQRYFERCKEVLAAVQEAESEIRSRSGEAYGRLRICVPYSFGILHLAPLWSTFLSENPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ ++L ++ +D+  +  D A+R+   +  S+LI R+L T  +   A P YL+    P 
Sbjct: 121 VQLDIVLSDRMVDLVEEGYDMAVRIG-VLTDSALISRRLATTRLILCATPTYLERHGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L  H  I +          F      +    E R   L  N+  + ++  +   GI
Sbjct: 180 VLKDLAHHQAIVYSYSARAGEWSFEGPDGRETVQSETR---LFANNGDTCLRVALDHQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD-- 296
           AL P++++ ++     LV+++    T    +Y  YP       K++   +F+        
Sbjct: 237 ALQPEFMIHEHLRRGELVQLLPQYNTGERNIYALYPTRKLLPIKVRRLVDFLARALERPV 296

Query: 297 WK 298
           W+
Sbjct: 297 WQ 298


>gi|213156968|ref|YP_002319013.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|301346693|ref|ZP_07227434.1| transcriptional regulator, LysR family protein [Acinetobacter
           baumannii AB056]
 gi|301595406|ref|ZP_07240414.1| transcriptional regulator, LysR family protein [Acinetobacter
           baumannii AB059]
 gi|213056128|gb|ACJ41030.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
          Length = 306

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L++F  +   GSF+ AA+QL++ +++ S  I  LE+ +  +L  R  R +  + 
Sbjct: 1   MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPD
Sbjct: 61  DGQAFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHQLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  DC +R  + +  S+LI R L+ +     A+P YL     P 
Sbjct: 121 IELVISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLIDMPQVICASPDYLNKHGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + F          F  L    +       S + VN   + +   + G+G+
Sbjct: 180 QPEDLLSHYCVNFFSTSGGRNYPFE-LMVNGKKQDFFLKSWIAVNDAENYVLSALQGAGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V +   N  LV+++ +   P  +V   YP+  + + +++ F  ++  
Sbjct: 239 IQVPRYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVFVAWLSE 292


>gi|300715427|ref|YP_003740230.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299061263|emb|CAX58372.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 304

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/296 (29%), Positives = 142/296 (47%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L +F  V  SGSF+ AAEQL ++ S++SR +  LET++G++L  R  R + LT
Sbjct: 1   MKANSEELAIFVAVVESGSFSRAAEQLDMANSAVSRAVKKLETKLGVELLTRTTRQVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R    V  ++   + EL ES   P G LRI     +  +LL   +K +   YP
Sbjct: 61  QEGDVYFRRVQSVLQEMAAAENELMESRQMPQGLLRIDAATPVVLHLLMPMIKPYRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR    +  SSL  R L T +    A+P YL+    P
Sbjct: 121 EVTLSLVSSETFINLIERKVDIAIRAGN-LTDSSLRARPLFTSYRKIVASPDYLQQHGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S Q+L  H  + F + +         +A  D  + +        NS  +I Q C++G+G
Sbjct: 180 HSCQDLAGHVCMGFVEPLSLNRWP---IAKADGQLYDITADP-TSNSGETIKQLCLIGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA L DY++        LV ++ D I P        Y      + ++++F +F+  
Sbjct: 236 IACLSDYMIDREIREGTLVELLADKILPIEMPFNAVYYSDRAVSTRIRSFIDFLDE 291


>gi|239503567|ref|ZP_04662877.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB900]
          Length = 306

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 137/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L++F  +   GSF+ AA+QL++ +++ S  I  LE  +  +L  R  R +  + 
Sbjct: 1   MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELENNLQCRLLERTTRHVRPSL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPD
Sbjct: 61  DGQAFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P 
Sbjct: 121 IELVISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + F          F  L    +       S + VN   + +   + G+G+
Sbjct: 180 QPEDLLSHYCVNFFSTSGGRNYPFE-LMVNGKKQDYFLKSWIAVNDAENYVLSALQGAGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V +   N  LV+++ +   P  +V   YP+  + + +++ F  ++  
Sbjct: 239 IQVPHYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVFVAWLSE 292


>gi|317049992|ref|YP_004117640.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951609|gb|ADU71084.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 299

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 135/290 (46%), Gaps = 6/290 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V   GSF  AA +L  S    S+ +S LE E+G++LF R  R L+ TE G   + 
Sbjct: 8   RMFVAVLEVGSFAGAAARLGTSSGQASKLVSRLEQELGVQLFKRSTRALSPTEVGRAYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +T    ++ES+  P+G+L+I+     G  +L   L EF   YP I++ +  
Sbjct: 68  RVKSLLEAFDTLDATVRESATTPTGRLKISAPGTFGTAVLARVLVEFARTYPQIELDVNF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ++I  +  D AIR+ K +  SSLI R+L  + +   A+P YL+    P   ++L  
Sbjct: 128 SDRAVNIVDEGFDMAIRIGK-LDDSSLIARRLGDVAVRVAASPGYLQQHGTPQHWRDLAA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  I   D   +    + ++      +  P    L  ++  + +Q  + G GIA LP +I
Sbjct: 187 HQCI--SDTNFRDPWHWPFITPCGDSVNMPIRGRLCFSNTEACLQAALAGLGIARLPGFI 244

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                    +V +++   TP   ++  YP A     K +   +F+    R
Sbjct: 245 AAPALQRGEIVSLLDAFATPPLGLFALYPPARHLAQKTRLLIDFLAEHFR 294


>gi|300693886|ref|YP_003749859.1| transcription regulator protein, lysr [Ralstonia solanacearum
           PSI07]
 gi|299075923|emb|CBJ35232.1| putative transcription regulator protein, LysR [Ralstonia
           solanacearum PSI07]
          Length = 307

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 12/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L  F  V   G F  AA +L L+ SS++RQ++ LE  +G +L  R  R +TLTE
Sbjct: 1   MDRFGALSAFVAVVEHGGFAPAARRLGLAPSSLTRQLNALEESLGTRLMNRSTRSVTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++ +     +  +LE+    + E +  PSG LR+   +  G+  +   +  FL  +P 
Sbjct: 61  AGAQYYEDARRILEELESADRTVSELAGPPSGLLRVTMPVAFGRLHVAPAIPAFLRRFPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L +  +++  D  D AIRL   + +S+L+ RKL        A+P YL     P 
Sbjct: 121 MRLDIRLTDAMVNLVEDRIDVAIRLGA-LTASNLVARKLAPHRRVICASPDYLGEHGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  HN + F  L          L    +    P    L+ N    + +  V G+G+
Sbjct: 180 QPRDLAHHNCLLFDYLTGDSTWT---LTRDGKREKVPVSGNLRANGSELLREAAVGGAGM 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPS----FTVYFCYPEALKNTGKLKAFRNFI 290
            L+P ++V D+     LV ++E            ++  Y    + + KL  F +F+
Sbjct: 237 LLMPTWLVGDDIAAGRLVPVLEPWTPTPGADEGAIWAVYLPNRRGSKKLAGFLDFL 292


>gi|221068336|ref|ZP_03544441.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713359|gb|EED68727.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 322

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D++ L VF  VA   SFT AA+QL L++S +S  +  LE ++G +L  R  R + LT 
Sbjct: 19  SMDFNALHVFTRVAELSSFTLAADQLGLTKSRVSTVVQQLERQLGTRLLQRTTRHVRLTA 78

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +    + E+   LE  Q   Q ++    G LRI     L ++++   L EFL  +P 
Sbjct: 79  DGEQFLERSKELMADLEQLQAMFQPATSGLRGSLRIDMPNTLARDVVLPKLPEFLSAHPL 138

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++ +D+  +  DC +R+  P+  + LI R L  + M   A+P YL+    P 
Sbjct: 139 LEVGISTSDRRVDVVQEGFDCVVRIG-PLADTDLIARTLGALEMCNLASPAYLERHGTPA 197

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H +I + + + +    + +    +  + +P    L VN   +    C+ G G+
Sbjct: 198 TLADLSRHRIIHYANQLGRHGAGWEYQRGRETAL-QPMRCALVVNGTDAYQAACLAGLGL 256

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P    +   D   LV +M D       V   YP       ++ AF N+I  
Sbjct: 257 IQAPVRGARHLLDQGLLVEVMPDFKAAPMPVSLLYPHRRHIAPRVTAFLNWITE 310


>gi|126442625|ref|YP_001061676.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|134283095|ref|ZP_01769797.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167722504|ref|ZP_02405740.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167741482|ref|ZP_02414256.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167827049|ref|ZP_02458520.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167897121|ref|ZP_02484523.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167905499|ref|ZP_02492704.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167913807|ref|ZP_02500898.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167921718|ref|ZP_02508809.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217424540|ref|ZP_03456038.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226196555|ref|ZP_03792136.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|126222116|gb|ABN85621.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|134245743|gb|EBA45835.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|217392464|gb|EEC32488.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225931431|gb|EEH27437.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 299

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 136/297 (45%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +TE 
Sbjct: 1   MQFDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTEL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +LH   + +   +  T+  +        G L+I+  +  G   L   + EFL+ +P +
Sbjct: 61  GHELHARATRILADIAETEEAMSARRGDLRGTLKISAPMSFGIAHLSPLIAEFLVRHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y +    P +
Sbjct: 121 RLHVELSDRHVDLIGEGFDLALRIGA-LPDSTLIARRLGELRMVACCSPAYRRKHGAPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     + +G       E                   L  N+   +    V G GIA
Sbjct: 180 PADLHGRACLLYGQEGRTGWE----FMIDGARRTFEVQGALLANNGDVVRDAAVAGLGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LLP +IV    D   LV ++E        +   YP+  ++    + F  FI  + R+
Sbjct: 236 LLPHFIVAHALDTGRLVAVLEPFAQAPLPINAVYPQHRQDMAACRTFLGFIEERLRE 292


>gi|115353237|ref|YP_775076.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|172062109|ref|YP_001809761.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115283225|gb|ABI88742.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
 gi|171994626|gb|ACB65545.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 349

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLAEHPALSLPT---EYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|309781960|ref|ZP_07676691.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308919304|gb|EFP64970.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 308

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 7/297 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS +  + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + L
Sbjct: 1   MSTNRLETMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G   +    ++   ++  Q   ++S     G+LR+   + + + ++   L   L  +
Sbjct: 61  TQDGQAFYERCQDLLADMDELQTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+++I+L   ++ +D   +  DC +R+   +  SSLI R L  +H    A+P Y+     
Sbjct: 121 PELEIELSSTDRRVDPVREGFDCVLRIG-TLTDSSLIARPLGQLHQVNCASPAYIARYGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P ++ +LD H ++ +   +      + +     R    P    + V+S  S    C  G 
Sbjct: 180 PKTLDDLDHHRIVHYVQTLGTKSPGWEYTVD-GRSAFRPMKGAVTVSSAESYDAACRAGL 238

Query: 240 GIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+   P Y        +  LV +M D   P   V   YP       +++ F N++  
Sbjct: 239 GMIQAPVYAGLSSAIADGTLVDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWMSE 295


>gi|238758500|ref|ZP_04619676.1| Transcriptional regulator [Yersinia aldovae ATCC 35236]
 gi|238703200|gb|EEP95741.1| Transcriptional regulator [Yersinia aldovae ATCC 35236]
          Length = 317

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 148/291 (50%), Gaps = 5/291 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + + VF  VA +GSF+ AAE+LHL++S++++ I+ LE ++G+ LF+R  R L++T
Sbjct: 8   MKSELNSIPVFVTVAEAGSFSRAAEKLHLTRSAVTKIIARLEAKLGVALFHRTTRSLSMT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  H       +++   +  L +   +  G+LR++  +  G   +   L  F   +P
Sbjct: 68  DEGTLYHEYCQRALNEICLVEEILNDGKFEVCGRLRVSVPVLFGHLCIAPLLTLFADTHP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++   ++ +D+  +  D AIR+     SSSLI RKL    M   AAP YL  C EP
Sbjct: 128 KLKLEISFSDRAVDLVEEGFDLAIRIGALPDSSSLIARKLSEHRMIYCAAPDYLNRCGEP 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + +EL+ H  + +  +  + ++ + +             + L ++   ++    V G+G
Sbjct: 188 QTAEELNLHAAVAY--IRSRKVQRWQFRDKTGTKKEFIPNAKLMMDDMQAVTNAAVSGAG 245

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           IA LP ++V++   +  L +I        + +Y  +P       K++   +
Sbjct: 246 IAWLPYWLVRELLVDGRLKQIQSITSDDIWPIYAIWPRTPHLPLKVRLAVD 296


>gi|54309915|ref|YP_130935.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46914354|emb|CAG21133.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 299

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 130/303 (42%), Gaps = 12/303 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  +   GSF+ AA QL LS+  +S  +  LE  +G+ L  R  R +
Sbjct: 1   MDVSFEQLKSMVVFAKIVEQGSFSAAARQLGLSRGVVSYHLKKLEDHIGMPLLNRTTRSI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT+ G +  +    +  +     ++++    +P GKL I+  +++  + +   L  F  
Sbjct: 61  SLTDAGQRYFQRCKRISEEAAAANLQIENLREEPEGKLTISAPVNISMHTIVPALNTFKT 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP I+I L L +  ++I  +  D AIR   P+  S L  +KL+T+      +P Y    
Sbjct: 121 LYPKIEIDLNLTDDIVNIIQEGVDLAIR-GAPLADSGLYAKKLMTMKNILCGSPSYFNQH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P +  EL  H  + +     K       L    R         +  NS  +   + V 
Sbjct: 180 GIPRTPAELANHEWVVY-----KKTSKIQTLTKGTRSYNVKMQGSITTNSASARTAFVVG 234

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+  LP Y          L  I+ED      T+Y  YP    ++ K++   +++    
Sbjct: 235 GHGVGRLPIYDALPLIKAGQLTPILEDYALSDITIYGVYPPRAADSKKMRLLLDYLQEHF 294

Query: 295 RDW 297
             +
Sbjct: 295 TQY 297


>gi|171316380|ref|ZP_02905600.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171098509|gb|EDT43311.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 349

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQSYTENFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEQLAEHPALSLPT---EYWGDERVFTGPDGEVRVRPTNVIVANNTAMLRQFALLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGGDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|78067390|ref|YP_370159.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968135|gb|ABB09515.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 294

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 138/287 (48%), Gaps = 9/287 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S+I ++I+ LE  + ++LF+R  R +TLT +G++    
Sbjct: 9   VFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  +L+  + EL  S+  P G+LR++        LL   L +F+  YP+I++ +   
Sbjct: 69  CRRVLAELDAAEQELTHSAEAPRGRLRVSLPT--IGTLLLPVLADFMAAYPEIELDIDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R L     H  A+P YL     P +  +L +H
Sbjct: 127 DRLVDVVDEGFDAVLRTGQP-SDSRLSSRLLGHFRQHLVASPDYLDRHGTPRTPADLTQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +    P   +   W   V R    P +   +  NS  + + + + G GIA LP + 
Sbjct: 186 RCLHY--RFPTSGKLETWPLRVPRAGTLPEVPVAMVSNSAEARLCFALRGLGIACLPIFF 243

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V+D   +  L  ++++ I     +Y  +P     T KL+AF +++  
Sbjct: 244 VRDALEDGTLRAVLDEHIASCTPIYVLWPSGRHPTPKLRAFVDYMAA 290


>gi|260775841|ref|ZP_05884737.1| probable transcriptional regulator protein LysR family [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608257|gb|EEX34426.1| probable transcriptional regulator protein LysR family [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 298

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 144/296 (48%), Gaps = 9/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + ++VF  V  +GSF  A++ L +  +++SR++  LE  +G+KL +R  R L+LTE+
Sbjct: 1   MNLNDIKVFISVVEAGSFAGASQFLAMPSTTVSRKVVQLEENLGVKLLHRSTRKLSLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    ++  +    LE     ++++  +P GK+RI++  D     +Q  + EFL  YP+I
Sbjct: 61  GRHYFQLCQQHLVALEEANDLVRQAQSEPKGKIRISSPFDFAVQYVQPWITEFLKAYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L   +  +++  +  D A R  + +Q SSLI R++   H    A+P +LK       
Sbjct: 121 SIELDTSDSYVNMVENRIDVAFRSGQ-LQDSSLIARRIGPKHSVCCASPDFLKAAGNIKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
            ++L   + +    L+ + + +  W  T         +S      S   I++  + G G 
Sbjct: 180 PEDLANVDCL----LMSQSLSNNQWHFTKQEQHYPINVSGKYASTSMHLIIESALNGLGA 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A +P  +VK   ++  LV++++D  TP   ++  Y      T  ++ F +    K 
Sbjct: 236 AYVPFALVKTHLESGQLVQVLQDYETPKSNMFVIYQSHKYMTKAIRLFIDHTLDKV 291


>gi|167585072|ref|ZP_02377460.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 349

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GSF  AA  + +S +  +R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +LE  +  +   + +P G LRI   +  G + L   L+ +   +P 
Sbjct: 61  SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTEQFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  D  I + + ++S+S++ R+L T  M   A P YL+    P 
Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGIVVTRQMRSASIVTRRLTTGCMTVCATPSYLEKHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  ++      +   D       D  +     + +  N+   + Q+ +LG G+
Sbjct: 181 HPEHLAEHPGLSLPS---EYWGDDRVFTGPDGEVRVRPTNVVVANNTAMLRQFALLGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y++  +     LVR++ D   P   +   YP       K++ F + +  
Sbjct: 238 AILPSYLIGSDIARGALVRLLPDFRLPQVEINIAYPSRRHLPAKVRTFIDHLVE 291


>gi|153010203|ref|YP_001371417.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562091|gb|ABS15588.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 303

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 129/294 (43%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G+FT A+  L++ +++IS  I GLE  +  KL  R  R + +T 
Sbjct: 1   MDQLSAMRAFLRVVETGNFTRASASLNMPKATISNLIQGLEAHLRTKLLNRTTRRVLVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   + +   L      L  +   P G+LR+     +   ++   L EF   YPD
Sbjct: 61  DGALYYERAARLLADLAELDGSLSSAQTLPKGRLRVEMASAVANLIIIPALIEFHQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ +D   +  DCAIR+ + +   SLI R++  +H  A A+  YL  C  PL
Sbjct: 121 IQIDLGVSDRPVDYVAENVDCAIRIGE-LADQSLIARRIGDMHFIACASAEYLDRCSTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
              +L + N    G   P   +   +         E      +  N   + +     G G
Sbjct: 180 HPSDLGR-NCTVVGYFRPSTGQQMPFRFKKGTEEIEVNGRYVVAANESTTYLAAARAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +   P ++VKD+     L  ++++       +Y  YP     + +L+ F +++ 
Sbjct: 239 VVQAPLFMVKDDIDNGTLRPVLQEWEIEPMPIYLVYPPNRHLSNRLRVFADWVV 292


>gi|66045593|ref|YP_235434.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256300|gb|AAY37396.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|330973190|gb|EGH73256.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 301

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    EV   +  ++   +++   P+G LRI   +  G  +L   L EF   +P
Sbjct: 60  EFGTAYYERCLEVLGLVAESEQLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+L N+ +D+  +  D AIRL    +SS LI R L    +   AAP YL     P
Sbjct: 120 EVRLDLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDF--NWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVL 237
              ++L +HN + F              W  T  D  +       +  N+   + Q    
Sbjct: 180 THPEDLREHNCLAFAYPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     L  +  D   P   +   Y +      KL++F  +
Sbjct: 240 GMGVVMLPDALVQRDLQEGRLFALFPDYHLPRRPMNLLYVQDRYRLPKLRSFVEY 294


>gi|307729300|ref|YP_003906524.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583835|gb|ADN57233.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 300

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDRFKQIETFVTVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + H +   +  +    VK SG LR++     G+  +   +  F + +PD
Sbjct: 61  EGSAFLEDCQRILHDMHNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSITLDLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPSYLSRRGAPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           S+ +L +HN +  G       +   W+   D  +   ++S  ++ +    + ++C+ G G
Sbjct: 180 SLADLAQHNCLALG---ASANQQRGWMFQQDGKVVSIKVSGTMECSDGAVLHEWCLEGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGADIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|319781638|ref|YP_004141114.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167526|gb|ADV11064.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 299

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 143/297 (48%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G  L  R  R  ++TE
Sbjct: 1   MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGALLLNRTTRQFSMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  SE+  ++++    ++ESS    G+++++         +  +L +F   +PD
Sbjct: 61  AGHTYYRRASEIVREVDSLADAVRESSGDVRGRIKLSAPRTFADAPIGQSLIDFAKQHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + LD++ +D+  +  D A+R+ + +++SSLI R+L    +   A+P  +     P 
Sbjct: 121 IVLDIQLDDRFVDLVEEGFDLAVRISR-LENSSLIARRLAPFSIKLCASPELIAKHGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L +   I   D   + + ++ +      P+       ++VNS ++     V G G 
Sbjct: 180 RPQDLSRMPCIV--DTNGRGLNNWPFKGDNGDPVSVSVSGPIEVNSPMTARAAAVSGLGF 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LPD+I   +     LV +++D I     ++  YP       K++ F +F+    R
Sbjct: 238 TVLPDFIAAPDLASGRLVSVIDDRILSGGGIFAVYPHRRYLPAKVRVFVDFLVQWFR 294


>gi|293394408|ref|ZP_06638707.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291423097|gb|EFE96327.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 305

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R + LT 
Sbjct: 1   MDRIQAMQVFIRVAEAGSFVRAAETLSLPASTVTSTIKNLERYLQVRLLNRTTRRVRLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +      E+   +E T+  L +S  +P G+LRI     +   ++  NLK+F  LYPD
Sbjct: 61  EGLQYLAQCREILSLIEHTESSLTDSVRRPQGRLRIDMPGGIAHFIVMPNLKDFYRLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + + ++ +D+  +  DC IR  + +  S+L+ R L        A+P YL+    P 
Sbjct: 121 IYLMIGVSDRQVDLVQEGVDCVIRTGE-LTDSTLVARPLGRFRWVTCASPDYLREYGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  I +     +   +  +    +  +  P      VN     ++ C+ G G+
Sbjct: 180 MPEALSQHRAIHYFSGSGRRTNELRFTRGTEM-LSVPVEGDAAVNETGLYIRLCLEGFGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L + ++ +N     LV ++ D   PS  V   YP     +  ++AF +++
Sbjct: 239 AQLAENVISENLQQGKLVEVLADWQPPSVPVTMLYPHQRFLSPAVRAFADWV 290


>gi|26989680|ref|NP_745105.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24984568|gb|AAN68569.1|AE016488_13 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 292

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 136/295 (46%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D +R+F  V   GSF+  A +L++ Q ++S+Q+  LE  +G  +F R  R L LT
Sbjct: 1   MDL-FDSMRIFVRVVERGSFSAVARELNMGQPAVSKQVRALEQYLGGAVFARSTRHLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +QG + +    E+  +LE           + +G LRIA  +  G+  +   +  FL  +P
Sbjct: 60  DQGQRFYSHCQEILSQLEHATRSFASGQEQIAGPLRIAAPVSYGRLCIAPLIGAFLQRHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+QI L L++ + D+ M+  D AIR+   ++S  L+   L T     YAAP YL    +P
Sbjct: 120 DVQIDLRLNDYNEDLLMENIDLAIRIGL-VKSEGLVAVPLGTSTRRVYAAPAYLDRHGQP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  HN I F  L       F         +       +  N+  +I +  + G G
Sbjct: 179 REPAELAGHNCIAFTLLEHYDRWHFT---HRGEALEVAIKGNVTSNNSEAIREMVLGGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I+L P ++     +   +  ++++  T +  V   +    + + +  AF +F+  
Sbjct: 236 ISLSPQWLFAADFEQGGVCSLLDEYQTTALPVSAVFSRERRRSARTMAFIDFLRE 290


>gi|221197010|ref|ZP_03570057.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203683|ref|ZP_03576701.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175849|gb|EEE08278.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183564|gb|EEE15964.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 317

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 4/289 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D +  F +     S T AA +L LS+S IS++IS LE  +G++L  R  R +  TE 
Sbjct: 1   MNNDDIHAFLLAVEQQSITEAARRLGLSKSVISKRISDLERLLGVQLLMRSTRNVVPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   SE   +L     ++ E S    G+LRI + + L +  L   + +F   +P +
Sbjct: 61  GQIFYEAASESMRRLLEVAEDVAERSHGLCGELRITSPVSLTRLWLGPAIAKFAAAHPHL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +  D++ ++I  +  D AIR  + +  S+LI R++ +       +P Y     EP S
Sbjct: 121 RVTVETDDRVVNIETERFDVAIRAAR-LPDSTLIARRIGSCARVVVCSPDYRAQYGEPHS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I++L  H  + +    P     F       +P      S    N+  ++    V G GIA
Sbjct: 180 IEQLVGHRCLNYSTAAPSVTWSFRASGATGKPRVVSPRSVFLSNNGETLRDAAVEGIGIA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +LP YI  +   +  LVR++         VY  YP +   + KLK F  
Sbjct: 240 MLPIYIADEALRDGRLVRVLAHEAPQDEVVYAVYPRSPFTSNKLKQFIE 288


>gi|293608409|ref|ZP_06690712.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828982|gb|EFF87344.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 300

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 136/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L++F  +   GSF+ AA+QL++ +++ S  I  LE  +  +L  R  R +  + 
Sbjct: 1   MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELENNLQCRLLERTTRHVRPSL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPD
Sbjct: 61  DGQAFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P 
Sbjct: 121 IELVISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGMPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + F          F  L    +       S + VN   + +   + G+G+
Sbjct: 180 QPEDLLSHYCVNFFSTSGGRNYPFE-LMVNGKKQDYFLKSWIAVNDAENYVLSALQGAGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V +   +  LV ++ +   P  +V   YP+  + + +++ F  ++  
Sbjct: 239 IQVPRYHVANELKDGQLVEVLSEWEIPKMSVSALYPQHRQLSPRVRVFVAWLSE 292


>gi|254521789|ref|ZP_05133844.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219719380|gb|EED37905.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 316

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 139/296 (46%), Gaps = 7/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +R F  +   G    AAE L +S + +S+Q+  LET +G+ L  R  R ++LTE
Sbjct: 16  MDSFNLMRAFRRIVERGGLARAAEDLGMSPAGLSKQLRTLETHLGVVLLQRTTRRMSLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +  +L+  +  + E   + +G+LR+        + L   L  FL  +P 
Sbjct: 76  TGHAYYRECCRLLDELDALERGIAEQRGEVAGRLRVNAPQSFALSTLSPLLPRFLQQHPQ 135

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+++++ +D   +  D ++RLR  +  S L+ R+L ++     AAP YL+    P 
Sbjct: 136 LSLDLVMEDRLLDAVGEGFDVSLRLRAELDDSRLVARRLASLQQVLCAAPSYLQQHPVPQ 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H+++ +             L   D  +     + + VN+ L +    V G GI
Sbjct: 196 AVDDLQAHSVLAYSLPDSPGSWP---LLGPDGQVTITLPARVTVNNSLMLRDLLVAGMGI 252

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP ++   +     L +++ D   P   V+  YP +     K++AF +F+  + 
Sbjct: 253 GALPSFLAAPSLARGELQQVLPDHRYPPRFVHAVYPTSRHLQPKVRAFIDFLHAEL 308


>gi|227326914|ref|ZP_03830938.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 298

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 142/298 (47%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F VV  +GS T AAEQL  + S ISR +  LE ++G  L +R  R L+L+
Sbjct: 1   MKVTLEELQAFVVVIDTGSITAAAEQLGQTTSGISRALRRLEDKLGTTLLHRTTRRLSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        +V H +E  + ++     +PSG+LR+ +     Q+++   + EF   YP
Sbjct: 61  EEGMMFLEHARDVIHAVEHAEEQVLLRHEQPSGRLRVNSGSAFMQHVIVPLVPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  ++  ID+   + D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 KIVLELNTNDFIIDLLEQHTDIAIRIG-TLKDSTIHARPLGASKLRIVASPDYLEQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++ L  H  + F     +     +W          P    L  ++   + Q  + G G
Sbjct: 180 ATVESLADHRCLGFT----QSESLNHWPLRHGLQDFYPVTPVLLASNGEILRQLALQGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  + +++++D+     LV I+ E+ +  S  VY  Y    +   ++  F +F+  K 
Sbjct: 236 IVRMSNFLIRDDLATGRLVPILTEETVEASLPVYAVYYRNSQLAARITCFLDFMSEKL 293


>gi|170726798|ref|YP_001760824.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812145|gb|ACA86729.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 300

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +++F  V  +G  T AAEQL+L++S++S+++S +E ++ +KL  R  R  +LTE G+
Sbjct: 4   LENMQIFIKVVETGGITKAAEQLNLAKSAVSKRLSEIEKQLSVKLINRTTRKSSLTEAGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    ++       +G L++A  +  G   L   L+ F   +P +Q+
Sbjct: 64  AYYQKCKLILEEVDDLNCQISSVQQSLNGALKLAVPLSFGVVHLVKALELFAKQHPSLQM 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+  +  D AIR+   +  SS+  R +  I     A+P YL     P + +
Sbjct: 124 DLDFSDRYIDLVEEGFDLAIRIG-TLADSSMHARAIAPISHILCASPEYLALNGSPSTPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+L+ +  +    +E  +     ++    P  S    N+   +    V G GIA L
Sbjct: 183 QLKSHSLLRYSRMPLAGIELTD---KDNKKFTVPMESHCIANNGDFLKAMAVSGHGIAFL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P +IV     N  L  +M++        Y  YP+      K++   +F+  
Sbjct: 240 PRFIVWQELANGTLESVMQNYQLAQMKAYAVYPQNRYLPKKVRMLIDFLSE 290


>gi|254254447|ref|ZP_04947764.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124899092|gb|EAY70935.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 322

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 8/297 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D +D +R F  V  +GSFT AAE LH+S+++++  +  LE  + ++L  R  R L +T
Sbjct: 18  RMDRFDAMRAFIRVVEAGSFTKAAETLHMSKTTVTHLVQQLEARLRVRLLNRTTRRLNVT 77

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +     +   ++  +  L  +S  P G+LR+       + +L   L  FL  YP
Sbjct: 78  PDGIAYYERVVRLLADMDDAETSLSSASAVPRGRLRVDVPSPFARLILIPALPAFLARYP 137

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ+ + + ++ +DI  +  DC +R  +P    S++ R++  + +  +A+P YL     P
Sbjct: 138 DIQLDMGVSDRTVDIIRENVDCVVRGGEP-ADRSMVARRVAGLSLGVFASPRYLALAGTP 196

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
               EL    H ++ F       +     +   D  I       L V+   + +   V G
Sbjct: 197 SHPAELENSHHRIVGFSWGRAGNLYPLV-MHRRDETINVQGRYALAVDDGNAYLAAGVAG 255

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  LP Y+ K   +   LV + +D       +Y CYP     + KL+ F +++  
Sbjct: 256 LGIMWLPHYMAKAAIEQRELVALFDDWQLDPMPLYVCYPPNRHVSPKLRVFIDWVVE 312


>gi|288934003|ref|YP_003438062.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288888732|gb|ADC57050.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 294

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 139/294 (47%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT 
Sbjct: 1   MDRIQAMQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEQYLKVRLLNRTTRRVSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +      E+   +E ++  L ES  +P G+LR+     +   ++  +L +F   YPD
Sbjct: 61  EGLQYLAQCREILALIEHSESSLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + + ++ +D+  +  DC IR+ + + +SSL+ R L        A+P YL+    P 
Sbjct: 121 IYLMIGVSDRQVDLIQEGVDCVIRMGE-LNNSSLVARPLGRFRWVTCASPDYLREYGVPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L KH  + +     +  ++F ++         P      VN     ++ C+ G G+
Sbjct: 180 SPEALSKHRAVHYFSGQARRADEFRFVRH-GETFSVPVSGNAAVNETGLYIKMCLAGFGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A L + IV D+     LV ++ D   P   V   YP     +  ++AF  ++  
Sbjct: 239 AQLAENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWMSE 292


>gi|146342957|ref|YP_001208005.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146195763|emb|CAL79790.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 302

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 140/294 (47%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ + +F  V    SF  AA++L LS++S+S+ +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEAMAIFAKVVELRSFAGAAQELSLSKASVSKAVSRLEERLGTRLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +++    E  + E    S+ P G +R A  +  G   +   L  FL  YP++ 
Sbjct: 66  QRLSERAAQLLADGEAAETEALAQSLTPRGLVRFAVPMTFGVKKIAPLLPAFLEQYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +  +D+  +  D A+R+ + +  SSL+ R+L  +  +  AAP YLK    P   
Sbjct: 126 IDLHMSDATVDLIGEGFDLALRIAR-LPDSSLVARRLCPMPRYTVAAPSYLKRHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H    +  L    +  +++      P        L+VN+  +++   + G GIA 
Sbjct: 185 MHLAEHKCFGYAYLSTAGV--WHYTNAAGEPASVRPAGQLRVNNGEALLPAVLAGLGIAD 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPD+IV D   +  +  ++E    P   ++   P       +++    F+  + 
Sbjct: 243 LPDFIVGDAIASGEVEVVLEGWSQPEGAMHLVMPPGGPRPARVEVLSEFLVKEL 296


>gi|221066656|ref|ZP_03542761.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220711679|gb|EED67047.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 296

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 142/296 (47%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +   VF  VA + SF  A   L +S S++ + ++  E ++G++LF+R  R +T T 
Sbjct: 1   MDSLNAFTVFVQVAETRSFVAAGRLLGVSASAVGKSVARFEEKLGVRLFHRSTRSITPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L   +  +  ++E  Q EL ++S  P G+LR++    L   L+   L +F+  YPD
Sbjct: 61  EGLLLLERSRRILSEIEAAQAELSQASSAPRGRLRVSLP--LVSTLVLPVLADFMHEYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L   ++ +D+  +  D  +R  +P   S L+ RKL    M   A+P YL     P 
Sbjct: 119 IQLDLDFSDRLVDVVEEGFDAVVRTGEP-ADSRLVARKLGHFKMVLVASPEYLATYGSPS 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +Q+L  H  + F       +E +      D    +  +S +  N+  +   + + G GI
Sbjct: 178 KVQDLQSHLCLHFRWPHSGKLEAWPLPPEPDGEPPKLPVS-MVCNNIETRACFALQGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LPD+ +++   +  LVR+M +        +  +P     + K++A  +F+  + 
Sbjct: 237 ACLPDFAIREALADGRLVRVMPEQAQREGIFHILWPAGRHVSPKVRALVDFLCSRV 292


>gi|330994451|ref|ZP_08318376.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter
           sp. SXCC-1]
 gi|329758451|gb|EGG74970.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter
           sp. SXCC-1]
          Length = 294

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 125/291 (42%), Positives = 173/291 (59%), Gaps = 2/291 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GSFTHA + L+LSQS++SRQIS LE  + + LF+RHARGL LTEQ
Sbjct: 1   MDWDKLRIFHAVAEAGSFTHAGDVLNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   EV+ KL  TQ  L ES  K +G+LR+ TT   G   L   L  F+   PDI
Sbjct: 61  GETLNQTVREVFSKLAMTQSLLTESKEKAAGRLRVTTTTGFGTCWLTPRLHRFMETNPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I LIL++ D+D+ M  AD A+R+  P Q   LIQR L    +  YA+  YL +   P +
Sbjct: 121 SITLILEDNDLDLGMREADVAVRMHPPRQ-PDLIQRHLADFPLPIYASQSYLNDYGTPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++EL+ H L+ FG   P  +   NWLA    P  E R + L+VNS  ++      G GI 
Sbjct: 180 LEELNAHKLVLFGGYHPP-VPHINWLAETGVPSDERRQARLEVNSLAAMAGAIAAGIGIG 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P Y     PNLV+I+ +V  P+   YF YPE L+ + ++  FR+F+  +
Sbjct: 239 SIPLYAASHYPNLVKILPEVPLPTVDAYFVYPEELRTSKRVAVFRDFLLAE 289


>gi|162149547|ref|YP_001604008.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209544785|ref|YP_002277014.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161788124|emb|CAP57728.1| putative transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532462|gb|ACI52399.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 300

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 137/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  R+F  V  + SFT AA+ L + +SS+S  I  LE  VG +L  R  R +  T 
Sbjct: 1   MDRIDLFRIFARVVETASFTRAADTLGMPRSSVSTAIRDLEARVGTRLLSRTTRIVAPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +     +   +E  +   +  +  P G LR      +G+ ++   L +FL  YP 
Sbjct: 61  DGSAFYEQCVRLIADVEDAENLFRRDAAGPRGVLRADMPGRIGRLIVAPALPDFLARYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +++  D  DCA+R+  P+  S+LI R+L T+ +   A+P YL     PL
Sbjct: 121 IDVELGVTDRAVNLVEDGIDCALRVG-PLHDSALIARRLGTLRLINVASPAYLARHGVPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + +       +ED+ W    D P        + VNS  + +  C+ G G+
Sbjct: 180 APADLPGHCAVRYASPTTGRIEDWEWTED-DTPRTLALPGRVTVNSAEAQIACCLAGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V+   D   LV ++ D       +   YP       +++AF +++
Sbjct: 239 IQVPAYDVRPHLDAGTLVEVLPDWRAAPLPMSVLYPHRKHVAHRVRAFIDWL 290


>gi|223041455|ref|ZP_03611658.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           202]
 gi|223017713|gb|EEF16120.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           202]
          Length = 299

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 141/292 (48%), Gaps = 11/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+QL +S +  S+ ++ LE  + ++L +R  R +T TE
Sbjct: 1   MDKLNAISLFCKVIETQSFTQAAQQLDISLAMASKLVAQLEEHLNVRLLHRTTRKITPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+     +   S   +GKL  +  +D G   +  +L +FL  YP 
Sbjct: 61  AGLLYYQRCQPILNELKEADDSINNISENLTGKLSFSLPMDFGSRFVAPHLGKFLEAYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L  +++ +D+  +  D  +R+ + ++ SS++ +K+   H    A+P YL     P 
Sbjct: 121 IELHLEFNDRRVDVVSEGFDLVLRVGQ-LEDSSIVAKKIAESHQIIVASPEYLATHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SIQ+LD+H  + + +       DF++     R   + RI     N+  S++Q      GI
Sbjct: 180 SIQDLDQHTCLLYEN---HQTWDFSFGEETLRYKAKGRIY---SNNGYSLVQIAKDHQGI 233

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P  +V        L+ I+E +      +   YP     + K+K F +F+
Sbjct: 234 INIPKCLVTKELKTSELIPILEHLDQRKLDISLLYPNRRYLSPKVKVFIDFL 285


>gi|77460696|ref|YP_350203.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384699|gb|ABA76212.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 301

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L +R  R L+LT 
Sbjct: 1   MDRLQAMRVFVTVVDLGSQSAAADHLDLSRPVVSRYLAELEDWVGARLMHRTTRKLSLTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+++     ++       Q  + E +  P G LRI+ +   GQ  L   +  F+  YP 
Sbjct: 61  AGNEILPRCRQMLDLSGDMQAAVSEPADAPRGLLRISVSTSFGQAQLADAMAAFVKAYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L + ++ +++  +  D AIR    +   +LI R+L        AAP YL+   +P 
Sbjct: 121 VNIDLQMLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLTVCRSVVCAAPAYLQEHPQPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L +HN +T                    P+  P    +  N   ++++  + G+G+
Sbjct: 180 RVEDLSRHNCLTHSYFGKSLWH----FEEDGEPVSVPVQGNISANEASTLLRATLAGAGV 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP Y+   +     LVR++        ++Y  Y         L+   +F+  +  +
Sbjct: 236 AMLPTYLAGAHIHSGELVRLLPHAEPRQMSIYAVYASRKHMPAALRCMLDFLVQRFPE 293


>gi|325121856|gb|ADY81379.1| putative LysR family transcriptional regulator [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 300

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 137/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L++F  +   GSF+ AA+QL++ +++ S  I  LE+ +  +L  R  R +  + 
Sbjct: 1   MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPD
Sbjct: 61  DGQAFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHQLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P 
Sbjct: 121 IELVISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + F          F  L    +       S + VN   + +   + G+G+
Sbjct: 180 QPEDLLSHYCVNFFSTSGGRNYPFE-LMVNGKKQDYFLKSWIAVNDAENYVLSALRGAGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V +   +  LV ++ +   P  +V   YP+  + + +++ F  ++  
Sbjct: 239 IQVPRYHVANELKDGQLVEVLSEWQIPKMSVSALYPQHRQLSPRVRVFVAWLSE 292


>gi|260221488|emb|CBA30101.1| hypothetical protein Csp_A15470 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 304

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +  F  V  +GSFT AA+ LH+S+++ ++ +  LE  + +KL  R  R + +T 
Sbjct: 1   MDRFDAMLAFVRVVEAGSFTKAAQTLHMSKTTATQLVQQLEARLRVKLLNRTTRKVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   L+  +  L  ++  P G+LR+     L + LL      F   YPD
Sbjct: 61  DGAAYYERAVRLLIDLDDAETSLSSAAASPRGRLRVDVPSPLARMLLVPAFPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI+L + ++ +D+  D  DC IR    +   SLI R +  + +  YAAP YL+    PL
Sbjct: 121 IQIELGVSDRLVDLIGDNVDCVIR-GGELTVPSLIARHVGDLRLGVYAAPSYLQRVGTPL 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              +L   +H ++ F       +  F      +R   + R   L ++   + +   V G 
Sbjct: 180 HPLDLGGAEHRIVGFLSSRTGKVLWFPLRRGAERIEIQGR-YVLAIDDGNAYLAAAVAGM 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LPDY+ K++     LV + ED    S  +Y  +P     + KL+ F N+I  
Sbjct: 239 GVVWLPDYMAKEHLKNGELVPLFEDWALDSMPMYLAFPPNRHVSMKLRVFINWIVE 294


>gi|184157770|ref|YP_001846109.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332876457|ref|ZP_08444224.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209364|gb|ACC56762.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322508082|gb|ADX03536.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323517662|gb|ADX92043.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735315|gb|EGJ66375.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 306

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L++F  +   GSF+ AA+QL++ +++ S  I  LE+ +  +L  R  R +  + 
Sbjct: 1   MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPD
Sbjct: 61  DGQAFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  DC +R  + +  S+LI R L  +     A+P YL     P 
Sbjct: 121 IELVISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLADMPQVICASPDYLNKHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + F          F  +    +     + S + VN   + +   + G+G+
Sbjct: 180 QPEDLLSHYCVNFFSTSGGRNYPFELMVNSKKQDYFLK-SWIAVNDAENYVLSALQGAGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V +   N  LV+++ +   P  +V   YP+  + + +++ F  ++  
Sbjct: 239 IQVPRYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVFVAWLSE 292


>gi|260775725|ref|ZP_05884621.1| transcriptional regulator LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608141|gb|EEX34310.1| transcriptional regulator LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 300

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 143/296 (48%), Gaps = 11/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  V +  SF  AA +L +S+S++++++  LE  +G++L +R  R ++LTE G 
Sbjct: 4   LDAIPFFLEVVKHASFAQAARELGVSRSAVNKRVVQLEEGLGVRLLHRTTRQVSLTEAGM 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+  ++ Y+ L+  +        +  G L+I+  +  G+ ++   +  FL  +  IQI
Sbjct: 64  NFHQHVNQAYYWLQKAEDAATSQQSQAIGTLKISAPMSFGRLVVAPIIPTFLEQFSGIQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCREPLS 182
            + + +  +DI     D AIR    +  SSLI RKL+       A+P Y +      P  
Sbjct: 124 DMTMSDDYVDIVAGGYDLAIR-GGDLDDSSLIARKLIKSRSVVCASPLYFESNARSVPSH 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
            +EL +HN +T+        E   W+      I    ++   +VN+  +++     G GI
Sbjct: 183 PRELIQHNALTY----RHTSETAEWVFAQGHEIESISVTGNYRVNNSEALLSATTQGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LPD+I +    +  L++++   + P  ++Y  +PE      KL+ F +F+  K 
Sbjct: 239 ARLPDFIARPYLHSGELLQLLPQYVMPEKSIYALFPERDHMPIKLRVFLDFLTQKL 294


>gi|237808088|ref|YP_002892528.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500349|gb|ACQ92942.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 300

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 137/291 (47%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L++F V+A++GSFT A+  L +S S++S  I  LET +G +LF R  R + LTE G
Sbjct: 5   NLNDLQLFLVIAKAGSFTKASALLGVSPSALSHSIKALETRMGFRLFNRTTRSIALTETG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L  +     ++LE     L ES  + +G +RI  +      +L   L+ F+  YP+I 
Sbjct: 65  EQLFGIIEPKLNELEREMQGLHESHNRLTGNIRITASEHAASAILSPLLESFIPQYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ ++N  +DI  D  D  IRL + ++   +  R    + M A A+P Y     +P + 
Sbjct: 125 IEVSVNNGFVDIVNDRFDGGIRLGEYLEKDMVAVRVGPDVRMLAVASPDYFAKHPKPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  H+ I     +      + W    +    + ++S  L  NS   I    + G GIA
Sbjct: 185 YDLQNHSCINL--RLSHQGGIYTWEFEQEGKETKVKVSGQLTFNSVSLIKNAALHGLGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L +  V D+     LV + E         +  YP A ++     AF  F+
Sbjct: 243 YLAEDFVADDIQNGRLVSVCETWCPYFSGFHLYYPSAKQHKP---AFAKFL 290


>gi|134295520|ref|YP_001119255.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134138677|gb|ABO54420.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 313

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 134/296 (45%), Gaps = 5/296 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIGRYRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+    +P 
Sbjct: 121 VHVELTLAQRMPDLLDEGYDVAIVVGRELPDSGLVSQRLGDSYSVICASPDYVGAHGKPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  +          +++         +        +VN   ++      G GI
Sbjct: 181 TPADLAQHACLGMV-APGFHFDEWTLAGPRGDELVPVTAPPFRVNVAEALAVAVREGMGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP Y       +  +VR++ +  +   ++Y  YP       K++ + +F+  + 
Sbjct: 240 GGLPLYSAIGGLRSGQIVRLLPEYRSQPMSIYALYPSRQYLDAKIRTWVDFLRDEL 295


>gi|59801814|ref|YP_208526.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA
           1090]
 gi|194099271|ref|YP_002002365.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae NCCP11945]
 gi|239999542|ref|ZP_04719466.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae 35/02]
 gi|240014718|ref|ZP_04721631.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae DGI18]
 gi|240017166|ref|ZP_04723706.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae FA6140]
 gi|240081195|ref|ZP_04725738.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae FA19]
 gi|240113408|ref|ZP_04727898.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae MS11]
 gi|240116244|ref|ZP_04730306.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID18]
 gi|240118530|ref|ZP_04732592.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID1]
 gi|240124076|ref|ZP_04737032.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID332]
 gi|240126307|ref|ZP_04739193.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae SK-92-679]
 gi|240128741|ref|ZP_04741402.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae SK-93-1035]
 gi|254494261|ref|ZP_05107432.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|260439941|ref|ZP_05793757.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae DGI2]
 gi|268595356|ref|ZP_06129523.1| LysR family transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268597305|ref|ZP_06131472.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268599479|ref|ZP_06133646.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268601911|ref|ZP_06136078.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268604242|ref|ZP_06138409.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268682701|ref|ZP_06149563.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae
           PID332]
 gi|268684889|ref|ZP_06151751.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687128|ref|ZP_06153990.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043220|ref|ZP_06568943.1| LysR family transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|293398545|ref|ZP_06642723.1| LysR family transcriptional regulator [Neisseria gonorrhoeae F62]
 gi|59718709|gb|AAW90114.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae FA 1090]
 gi|193934561|gb|ACF30385.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae NCCP11945]
 gi|226513301|gb|EEH62646.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|268548745|gb|EEZ44163.1| LysR family transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268551093|gb|EEZ46112.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268583610|gb|EEZ48286.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268586042|gb|EEZ50718.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268588373|gb|EEZ53049.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268622985|gb|EEZ55385.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae
           PID332]
 gi|268625173|gb|EEZ57573.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627412|gb|EEZ59812.1| lysR-family transcriptional regulator [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012826|gb|EFE04809.1| LysR family transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|291611016|gb|EFF40113.1| LysR family transcriptional regulator [Neisseria gonorrhoeae F62]
 gi|317164791|gb|ADV08332.1| LysR family transcriptional regulator [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 303

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLEMANSAVSRIVKRLEEKLGVNLLNRTTRQLNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEVPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L   H    A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSHFRVVASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S ++L  H  + F +  P  +  +  L     P           +S   +   C+   G
Sbjct: 180 QSAEDLANHQCLGFTE--PGSLNTWAVLDAQGNPYKI--SPHFTASSGEILRSLCLSSCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++V ++     L+ +  +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IACLSDFLVDNDITEGKLIPLFAEQTSNKTHPFNAVYYSDKAVNLRLRVFLDFLVKEL 293


>gi|241113060|ref|YP_002972895.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861268|gb|ACS58934.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 305

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 137/286 (47%), Gaps = 7/286 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F       S+  AA    +S S+I + ++ LE+ +G++LF R  R ++LTE+G+ L+  
Sbjct: 9   AFVHAVEQQSYVAAARVGGVSPSAIGKAVARLESRLGVRLFNRTTRSISLTEEGAVLYER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   ++  +  +  S  +P G+LR++    +G +LL   L  F   +P+I++ +  +
Sbjct: 69  YKRIIDDMDDAEATISRSRERPRGRLRVSVPHIVGHHLLMPILPVFAEQFPEIELDIDFE 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +K ID+  +  D  +R  + +  + LI R L   H     +P YLK    P +  +L +H
Sbjct: 129 DKVIDLVAEGLDVVVRSGE-LADARLIARHLGDQHFVVCGSPDYLKRHGRPETPDDLSQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I F       +  + +    +R    P    L +N+  + ++    G G+A LP Y+ 
Sbjct: 188 ACIHFKYPSSGRVAPWAFRRPCER---LPLPRGLTLNNTDAGLRAARDGLGLAHLPVYVA 244

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + +    +LV ++   + P  ++   +P   + + K++AF +F+  
Sbjct: 245 EPHMRTGSLVPVLTSFMVPYGSLSLVWPSNRQLSPKVRAFVDFVVA 290


>gi|89071184|ref|ZP_01158375.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89043280|gb|EAR49506.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 302

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 105/291 (36%), Positives = 170/291 (58%), Gaps = 4/291 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKLR+F+ VA +GS T A + LHLSQS++SRQI  LE  +   LF+RHARGL LTEQ
Sbjct: 2   MDWDKLRIFHAVADAGSLTAAGDTLHLSQSAVSRQIRALEESLNTTLFHRHARGLILTEQ 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L   T  +  +LE     +++S  +  G+L++ TTI  G   L   L +    +PD+
Sbjct: 62  GELLFDATRSMNKRLEAAAARIRDSEEEVFGELKVTTTIGFGTLWLAPRLVKLYEKFPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L+ + +D+ M  AD AIR+++P Q+  LI+++L+++HM  YA+  YL+       
Sbjct: 122 KIDLMLEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMSVHMRLYASADYLEGRAPINE 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +H L+      P   +     +     +     S L VN+Y  ++Q      G+ 
Sbjct: 181 MDDLREHRLVC---QNPGSAQVSASASLTQSLLSHDLHSLLTVNNYFGVLQAVNNHLGVG 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +LP+Y+V+D PNLVR++ +V +    V+  YPE L+ + ++ AFR+F+  +
Sbjct: 238 VLPNYVVEDFPNLVRVLPEVESAEVPVFLAYPEELRQSKRIAAFRDFVQEE 288


>gi|170699006|ref|ZP_02890064.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136113|gb|EDT04383.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 323

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++       Q  + KPSG LR+     LG+ ++   L  F   YPD
Sbjct: 61  EGAAYYEHCMKIISEIAEADASFQSGNRKPSGVLRVHMPSSLGRRVVLPALSIFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP 
Sbjct: 121 ITLDLGLSDRYVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLKRVTCASPDYLARYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I +L  H+ + F            W+  +D    E R+   + VN   + +   + G G
Sbjct: 180 EIADLADHHAVNF--RASHGARAIPWVFMIDGKPLEVRMNGSVTVNDSDAYVTCGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     + +LV ++ D       +   YP     + K++ F +++  
Sbjct: 238 MIQPTLFMVLPNLRDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWLAE 292


>gi|53721469|ref|YP_110454.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76817347|ref|YP_337126.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126457173|ref|YP_001074619.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167818674|ref|ZP_02450354.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167848545|ref|ZP_02474053.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|237510359|ref|ZP_04523074.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242313778|ref|ZP_04812795.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254185351|ref|ZP_04891939.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254187230|ref|ZP_04893744.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198845|ref|ZP_04905263.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254264514|ref|ZP_04955379.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254296770|ref|ZP_04964224.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52211883|emb|CAH37887.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|76581820|gb|ABA51294.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|126230941|gb|ABN94354.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|157806631|gb|EDO83801.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157934912|gb|EDO90582.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169657017|gb|EDS88411.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184209586|gb|EDU06629.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|235002564|gb|EEP51988.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242137017|gb|EES23420.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254215516|gb|EET04901.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 299

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 136/297 (45%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +D LR+F     +GSFT AA++L LS+  +SR++  LE  +G++L  R+ R L +TE 
Sbjct: 1   MQFDDLRIFVATVEAGSFTGAADKLLLSKQFVSRRVMALEASLGVRLLVRNTRKLAVTEL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +LH   + +   +  T+  +        G L+I+  +  G   L   + EFL+ +P +
Sbjct: 61  GHELHARATRILADIAETEEAMSARRGDLRGTLKISAPMSFGIAHLSPLIAEFLVRHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +D+  +  D A+R+   +  S+LI R+L  + M A  +P Y +    P +
Sbjct: 121 RLHVELSDRHVDLIGEGFDLALRIGA-LPDSTLIARRLGELRMVACCSPAYRRKHGAPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     + +G       E                   L  N+   +    V G GIA
Sbjct: 180 PADLHGRACLLYGQEGRTGWE----FMIDGARRTFEVQGALLANNGDVVRDAAVAGLGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LLP +IV    D   LV ++E        +   YP+  ++    + F  FI  + R+
Sbjct: 236 LLPHFIVAHALDAGRLVAVLEPFAQAPLPINAVYPQHRQDMAACRTFLGFIEERLRE 292


>gi|170693923|ref|ZP_02885080.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141341|gb|EDT09512.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 307

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W +L++F + A  GS + AAEQL +S ++ SR +S LE  +G +L  R  R + LT+
Sbjct: 1   MDRWTQLQLFVLTADLGSLSKAAEQLDMSNAAASRTLSSLEERLGARLIERTTRRMWLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + HR  + V  +L        E +V P G LR+ +++      +   L EFL  YP+
Sbjct: 61  AGREYHRRCTAVISELSEADSIASEEAVSPRGVLRVTSSVSFAMMHIAPALPEFLTRYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +Q++  N+  +      D AIR R+    S +  R+L        A+P YL     P 
Sbjct: 121 LSVQIVAANQYQNFIEAGIDIAIRTREHEGDSGITIRRLAETRRVLAASPAYLSAHGRPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L +HN++ +   +   +       T +R I     S L  N    I+     G GI
Sbjct: 181 NPEDLAQHNMLVYNLAVDPYLLHLR-RGTEERNIAI--ASALDSNEGQVIVAAGRAGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + P YI+ D+     LV +++D   P  T+   Y        K++ F +F+  + R
Sbjct: 238 VVQPLYIIHDDIVSGRLVPVLDDWQLPRLTINLAYQSRRYQPAKIRVFTDFLMERVR 294


>gi|237800826|ref|ZP_04589287.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331023683|gb|EGI03740.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 301

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 131/299 (43%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    EV   +  ++   +++   PSG LRI   +  G  +L   L EF   +P
Sbjct: 60  EFGTAYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAEFSRHFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L+L N+ +D+  +  D A+RL    ++S LI R +    +   AAP YL     P
Sbjct: 120 QVRLDLVLTNQRLDMIDNGFDVAVRLGNIPEASPLIARPMQDYTLTICAAPAYLARHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
              ++L  HN + F                +  P GE  +     L  N+   + Q    
Sbjct: 180 THPEDLRAHNCLPFAYPAGDEWRTAGTQWRMTGPEGEVLVEVDGSLIANTSAGLYQAARA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LPD +V+ +     LV ++ D   P   +   Y +      KL++F  F   +
Sbjct: 240 GMGIVMLPDALVQRDLQEGRLVALLPDYHLPRRPMNLLYVQDRYRLPKLRSFVEFALQR 298


>gi|315182743|gb|ADT89656.1| transcriptional regulator [Vibrio furnissii NCTC 11218]
          Length = 300

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 139/296 (46%), Gaps = 9/296 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V   GSF  AAE+L +S    S+ IS LE ++G++L  R  R L  TE G   + 
Sbjct: 8   RMFVAVMELGSFAKAAERLAISSGQASKLISRLEQDLGVQLVKRSTRSLAATEVGQAYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               V   L+     ++ +S  PSG+LRI+  +  GQ+ L  +L +F   +PDI + +  
Sbjct: 68  RIKRVLDDLDALDDAIRNASRLPSGRLRISAPVTFGQSQLAPSLIDFSKQFPDITLDVKF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++  +  D A+R+ K +  SSLI RKL  + +   A+PHYL     P  I++L +
Sbjct: 128 SDRSVNVVDEGFDLALRIGK-LDDSSLIARKLCDVRVITLASPHYLSQHGTPTHIRDLAQ 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H+ I   D   +    + +L              L+ ++    ++    G GI  LP ++
Sbjct: 187 HHCII--DTNFRDPYHWPYLNEQGHVHDFAVNGRLKFSNAEVCLKAACAGLGITRLPTFV 244

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298
                    L+ I++    P   +Y  YP A       +AF +F+   F    DW+
Sbjct: 245 AAQALKEQQLIAILQQYEVPPLGLYALYPPAKHLARSSRAFIDFLVNRFANGADWE 300


>gi|261819683|ref|YP_003257789.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261603696|gb|ACX86182.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 298

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 142/298 (47%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F VV  +GS T AAEQL  + S ISR +  LE ++G  L +R  R L+L+
Sbjct: 1   MKVTLEELQAFVVVIETGSITAAAEQLGQTTSGISRALRRLEDKLGTTLLHRTTRRLSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+GS        V H +E  + ++     +PSG+LRI +     Q+++   + EF   YP
Sbjct: 61  EEGSMFLEHARGVIHAVEHAEEQVLLRHEQPSGRLRINSGSAFMQHVIVPLVPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+   + D AIR+   ++ S++  R L T  +H  A+P YL+    P
Sbjct: 121 KIVLELNTDDFIIDLLEQHTDIAIRIG-TLKDSTIHARPLGTSKLHIVASPDYLQQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++ L  H  + F     +     +W               L  ++   + Q  + G G
Sbjct: 180 KTVESLADHLCLGFT----QSESLNHWPLRHGLQDFYTIKPVLSASNGEILRQLALQGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  +  ++++D+     LV I+ E+ +  S  VY  Y    +   ++  F +F+  K 
Sbjct: 236 IMRMSTFLIRDDLAAGRLVPILTEETVEASLPVYAVYYRNSQLAARITCFLDFMSEKL 293


>gi|83647551|ref|YP_435986.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83635594|gb|ABC31561.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 304

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F      GSF  AA+ L LS+  ++R +SGLE  +G KL +R  R L+LTE
Sbjct: 1   MDRIQAMRAFVATVDHGSFAKAADILDLSRPVLTRLVSGLEDSLGAKLLHRTTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V+  L+  + +L + +  P G LR++  +      L+  + EF+  YP 
Sbjct: 61  SGERFLEACRNVFSLLDEAESDLSQQTQCPKGVLRLSAPMAFSLLHLEPVIAEFMSTYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L ++ +D+  +  D +IR+   ++   LI R++    +   A+P YLK    P 
Sbjct: 121 IEVDMELADRRVDLVEEAFDLSIRIAHELE-PGLIARRIGGTALVTCASPEYLKLNGLPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H  + F                 D+          + N+ + + +    G GI
Sbjct: 180 SPDDLRTHECMGFSLARRNSWS----FLENDKVRYVDVRGRFKSNNGIFLAKLAESGKGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             LP +IV +      LV +++D   P+  +Y  Y        K++ F +F+  
Sbjct: 236 VQLPCFIVNEALREKRLVTVLKDYQPPNLDIYCVYQSREYLPQKVRLFIDFMSE 289


>gi|71736300|ref|YP_274688.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556853|gb|AAZ36064.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320328403|gb|EFW84406.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 301

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    EV   +  ++   +++   PSG LRI   +  G  +L   L  F L +P
Sbjct: 60  EFGTAYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+L N+ +D+  +  D AIRL    QSS LI R +    +   AAP YL     P
Sbjct: 120 EVKLDLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARLMQDYTLTICAAPSYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
              ++L  HN + F                +  P GE  +     +  N+   + Q    
Sbjct: 180 AHPEDLGAHNCLAFSYPAGDEWRTAGTQWRMTGPEGEVLVDVDGSMVANTSAGLYQAACA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     LV ++     P   +   Y +      K+++F  +
Sbjct: 240 GMGVVMLPDALVQRDLQEGRLVALLPGYHLPRRPMNLLYVQDRYRLPKVRSFVEY 294


>gi|254422904|ref|ZP_05036622.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335]
 gi|196190393|gb|EDX85357.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335]
          Length = 302

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 138/299 (46%), Gaps = 11/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R F  V     F  A   L LS+S +++ ++ LE ++ ++L  R  R ++ T+
Sbjct: 1   MDKLESMRTFVEVVNHSGFAAAGRHLGLSRSVVNKLVAQLEQDLDVQLLQRTTRRVSPTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++  +++  ++ + +  ++P G LRI   +  G   L   + +F+  YPD
Sbjct: 61  MGRAYYERCVDILAEVKAAELSVTQMQMQPKGTLRINAPMSFGTMHLAEAIAQFMYQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++Q+ L ++ +D+  +  D  +R+   ++  +LI  K+  I     AAP+YLK    P 
Sbjct: 121 IKVQMTLSDRFVDLIEEGFDVTLRIAAAVEEEALITHKIAPIRRVLCAAPNYLKAHGTPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L +H+ + +G L          L   D+    P       N+   + +  + G GI
Sbjct: 181 RLEDLKQHHCLHYGHLATGSKWR---LVGPDKTYTIPIKCRGYSNNGEVLRESAIAGVGI 237

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           ALLP +I+ D      L  I+ +      T   CY      + K++    F+    +DW
Sbjct: 238 ALLPTFIIGDALRSNELSIILPNYRPLELTARLCYATNRHLSTKIQLLTTFL----QDW 292


>gi|157369150|ref|YP_001477139.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320914|gb|ABV40011.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 295

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 146/298 (48%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V  SGSF+ AAEQL  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVESGSFSRAAEQLDQANSVVSRTVKKLEAKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R   +V   +   +  L ES  +P G LR+     +  ++L   + EF  LYP
Sbjct: 61  QEGENYFRQVQKVLSDMAAAENALMESRQRPQGLLRVDAATPVVLHVLTPLVAEFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR+ + +  SSL  RKL+T +    A+P YL     P
Sbjct: 121 EMSLSLVSSENFINLIERKVDIAIRVGE-LTDSSLKARKLMTSYRRVLASPAYLAQYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++EL++H+ I F DL          LA  D    E     L  NS  +    C+ G+G
Sbjct: 180 QKVEELEQHSCIGFNDLPSLNRWP---LACADGRQLEI-TPGLTTNSGETQRHLCLHGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L ++++  +    +LV I+ +   P +  V   Y      + +L++F +FI  + 
Sbjct: 236 IACLSNFMIDADIERGDLVPILVEETLPVAMPVNAVYYSDSAVSNRLRSFIDFISERL 293


>gi|320157223|ref|YP_004189602.1| transcriptional regulator LysR family in formaldehyde
           detoxification operon [Vibrio vulnificus MO6-24/O]
 gi|319932535|gb|ADV87399.1| transcriptional regulator LysR family in formaldehyde
           detoxification operon [Vibrio vulnificus MO6-24/O]
          Length = 294

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+ +  F  VA SGSFT AA +L  S +++SR++  LE  +G+KL  R  R ++LTE
Sbjct: 3   NIHWEGVNEFVAVAESGSFTQAATRLETSVANVSRRVGQLEERLGVKLLLRSTRKVSLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +    +   L   ++ + +    P GKLRI   +  G+  +   L +FL+ YP 
Sbjct: 63  AGQIYVQHCRSILEGLHQAELAVTQMQQTPQGKLRITAPVTYGEQKIASLLNDFLIRYPK 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L N+ +D+     D A+RL + ++ SS + R+L   H+H  A P Y +    P 
Sbjct: 123 IDLELVLTNQKLDLIEQGVDIAVRLGQ-LEDSSSMARRLSDRHLHVCATPEYFEQHGMPH 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  HN +           D        +         ++ +S + ++   + G G+
Sbjct: 182 TLSDLSSHNCLI-------GTHDHWRFKENHQGRSIKVNGRIRCSSGVVLLDAALKGIGL 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPDY V ++     L+ ++         V+  YP     + K++   + +
Sbjct: 235 VQLPDYYVDEHLRAGRLIEVLTHFRDDREGVWALYPHNRHLSPKVRLLVDHL 286


>gi|239996656|ref|ZP_04717180.1| LysR family transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 327

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 145/292 (49%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V   GSF+  A++L+L+ S +S++I+ LE+++ ++L YR  R L LT+ G  
Sbjct: 31  DDIILFVNVVDEGSFSKVAQKLNLTNSVVSKRIARLESDLNVQLLYRSTRKLNLTDAGRT 90

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         ++  +  +   S +  GK+RI       + +L   + EF  L+ ++ ++
Sbjct: 91  LYNKARIANLAIQDAEDAVSGYSDEVRGKIRITMPNVSAKLVLNRAIAEFCNLHEEVDVE 150

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + N+  +I  +  D AIR    ++ SSLI ++L+       A+P YLKN   P    +
Sbjct: 151 LAITNRVTNIIEEGYDLAIRTAH-LEDSSLIAKRLIDSKWIVCASPTYLKNKSRPNHPDD 209

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +HN + +         DF W   ++  +   +I   +Q N+  ++ Q  + G G+A L
Sbjct: 210 LTEHNCLIYK--YDSTGPDF-WPFHIEGELHNVQIGGRIQSNNLDALRQAAIAGVGVAFL 266

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V    ++  L  ++ + +T +  +Y  YP + +   KLK   N++   
Sbjct: 267 PKALVHEDIEDGALSPLLAEYVTKTMGIYAVYPRSRQPDKKLKLLVNYLQEA 318


>gi|320324476|gb|EFW80553.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 301

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    EV   +  ++   +++   PSG LRI   +  G  +L   L  F L +P
Sbjct: 60  EFGTAYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+L N+ +D+  +  D AIRL    QSS LI R +    +   AAP YL     P
Sbjct: 120 EVKLDLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARFMQDYTLTICAAPSYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
              ++L  HN + F                +  P GE  +     +  N+   + Q    
Sbjct: 180 AHPEDLGAHNCLAFSYPAGDEWRTAGTQWRMTGPEGEVLVDVDGSMVANTSAGLYQAACA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     LV ++     P   +   Y +      K+++F  +
Sbjct: 240 GMGVVMLPDALVQRDLQEGRLVALLPGYHLPRRPMNLLYVQDRYRLPKVRSFVEY 294


>gi|269961786|ref|ZP_06176145.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833497|gb|EEZ87597.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 299

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE+ +L+ S +S++I+ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVEMGSFSKVAEENNLTNSVVSKRIARLEEEIGAQLLYRTTRKLTLTEAGKV 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+   +
Sbjct: 124 MSLDNRFVDLVAGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPIEPID 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + +        +        D         C   ++  ++ +  + G GIA +P
Sbjct: 183 LTTHNCLQYAYQTTGATDW--QFKGKDGDYIVRVSGCFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV I  +++     +Y  YP   +   K+K     I  +
Sbjct: 241 RCLVYHDIRSGELVDIFPELVGKKLGIYAVYPFTRQPPNKVKLLIEHIRER 291


>gi|241663121|ref|YP_002981481.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240865148|gb|ACS62809.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 308

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 134/297 (45%), Gaps = 7/297 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS +  + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + L
Sbjct: 1   MSTNRLETMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G   +    ++   ++  Q   ++S     G+LR+   + + + ++   L   L  +
Sbjct: 61  TQDGQAFYERCQDLLADMDELQTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+++I+L   ++ +D   +  DC +R+   +  SSLI R L  +H    A+P Y+     
Sbjct: 121 PELEIELSSTDRRVDPVREGFDCVLRIG-TLTDSSLIARPLGQLHQVNCASPAYIARYGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P ++ +LD+H ++ +   +      + +     R    P    + V+S  S    C  G 
Sbjct: 180 PRTLDDLDRHRIVHYVQTLGTKSPGWEYTVD-GRSAFRPMKGAVTVSSAESYDAACRAGL 238

Query: 240 GIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+   P Y        +  LV +M D   P   V   YP       +++ F N++  
Sbjct: 239 GMIQAPVYAGLSSAIADGTLVDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWMSE 295


>gi|307941746|ref|ZP_07657101.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307775354|gb|EFO34560.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 316

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 143/298 (47%), Gaps = 13/298 (4%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   +   + +F  V  +GS + A  +++LS + +S++I  LE ++G +L  R  R + +
Sbjct: 1   MKMSNLTDMEIFARVVSAGSMSAAGREMNLSPAVVSKRIRRLEDKLGTRLLQRTTRQIAM 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G   +     +   +E  +  + + S K  G L++AT+   G+  +  ++++FL  +
Sbjct: 61  TEAGQGFYERVIAILASVEEAEEFVSQGSAKARGTLKVATSTSFGRLHIAPHIQKFLDAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ + L L++  +DI  +  D AIR+ + +  SSL+ R+L  +H    A+P YL    E
Sbjct: 121 PDMSVNLDLNDDFVDIVGEGYDLAIRIAE-LSDSSLVARRLAPVHRILVASPDYLAKHGE 179

Query: 180 PLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P SI +L + H  +   +  P  +   + + TV         + ++ NS   + +  + G
Sbjct: 180 PHSISDLAESHLTLAAANQGPWKLVGPHGIETV------KTTAPVKTNSSEVVRECLLAG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIAL   + V     +  L  ++ D        +Y  YP       K++AF +F+  
Sbjct: 234 VGIALRSTWDVGPELRDGKLRMVLPDYRASRDVGLYAVYPSRQFLPVKVRAFIDFLAA 291


>gi|311103973|ref|YP_003976826.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758662|gb|ADP14111.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           25 [Achromobacter xylosoxidans A8]
          Length = 311

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 135/295 (45%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ AA  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLYYFSQVVEQGGFSAAARALDIPKSRLSRRISHLEESLGVRLLQRTTRRLRLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+          +++   +P+G + ++  + + Q++L   L EFL  +P + 
Sbjct: 63  ERYLHYCREMAASARAADDAMRQLQAEPTGPVIVSCPVSIAQDVLSPLLPEFLDAWPAVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++ N+ +D+  +  D A+R+R  +   + L+ R   T      A+P YL+    P +
Sbjct: 123 VQLLVTNRRVDLIREGVDLALRVRTKLDTDAELVVRHFGTARGTLVASPSYLQRHGTPDT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H  ++F D  P+    +         +       L  N ++ + +  V G GIA
Sbjct: 183 PQDLATHTTLSFSD--PQNEVRWPLRNDKGEEVHIELKPQLSCNDFIVLTEAAVRGRGIA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP     +      LV+++    +P   V+  YP        ++A  +F+  + 
Sbjct: 241 LLPSIATHEQLRRGQLVQVLPQWQSPEGIVHCIYPSRRGMMPAVRALLDFLSERL 295


>gi|229526471|ref|ZP_04415875.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|298499753|ref|ZP_07009559.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|229336629|gb|EEO01647.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|297541734|gb|EFH77785.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 299

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVG 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN + +        +                      ++  ++ +  + G GIA +P
Sbjct: 183 LARHNCLQYAYQTTGATDWE--FKGAKGNYIVKVSGTFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV +  + +     +Y  YP   +   K++     I  +
Sbjct: 241 RCLVYHDFRNGELVDVFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRAR 291


>gi|237808396|ref|YP_002892836.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500657|gb|ACQ93250.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 300

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 135/288 (46%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F      GSF+ AA+ L +S   + + +  LE  +G++L  R  R   LTE G+  +
Sbjct: 7   MTMFVKAVELGSFSAAADALQMSPQLVGKNVRMLEQHLGVRLLNRTTRSQHLTEIGATFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  +    ++ + P GKLRI  ++  G + L   + E++ LYP++ ++L 
Sbjct: 67  ERARNILAEMEIAEGLAAQTRIVPKGKLRINASVTFGVHALTPKIAEYMQLYPEVSVELC 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ ID+  +  D   R+ + +  S LI R+L    +   A+P Y++     L+  +L 
Sbjct: 127 LSNRYIDLIDEGFDAIFRIGE-LSDSGLIARQLRPYRLILCASPRYMETHEPLLTPDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + F     +    F+     D          L  +S  +I+   + G+GI L P  
Sbjct: 186 RHECLGFSHTELRTTWTFD---GPDGHKTVQVKGRLMSDSGEAIVCAGLCGAGIMLQPSE 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +V     +  LV I+ +   P+  ++  +    + T KL++F +FI  
Sbjct: 243 LVTPYLQSGQLVEILPEYKAPTRPMHLVHTPDRRMTPKLRSFVDFIVA 290


>gi|254249620|ref|ZP_04942940.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124876121|gb|EAY66111.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 359

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +SS+SR +  LE  +  +LF R  R ++LT +G   +  
Sbjct: 53  TFLAVVTEGSFARAADRLGVGRSSVSRHVQRLEDRLDARLFQRTTRSMSLTREGELFYEN 112

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  L     +++E  S  PSG LR+ +T   G+ ++   L++F   YPDI + L+L
Sbjct: 113 CRPGIEHLAQALEDMRELRSGPPSGHLRVGSTPGFGRKVIAPLLRDFHAQYPDITLDLLL 172

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++  D S D  D A R  + ++ S+++ R+L+ + M   A+P Y      P  + +L +
Sbjct: 173 NDRPADFSADRIDVAFRDGR-MEDSAIVARRLIPMQMIVCASPSYAHRHGLPRHVDDLAR 231

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I       +  E   W   +D      + +     N    +++  + G GIA LP Y
Sbjct: 232 HRCINLCTASGRVTE---WEFRIDGVTQRRQFAAHHTFNDIDLVVRAALDGLGIAQLPAY 288

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V D   +  L+  +          Y CY        +++ F +++  + R
Sbjct: 289 QVCDLLADGRLLSCLGQHAPDDGGHYLCYLSRKHLPTRIRVFIDYMIEQTR 339


>gi|206560399|ref|YP_002231163.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198036440|emb|CAR52336.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 321

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 136/297 (45%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AA+ LH+S++++++ +  LE  + +KLF R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVEAGSFTKAADTLHMSRTTVTQLVQQLEARLRVKLFNRTTRKVVVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  +S  P G+LR+       + +L   L  F   +PD
Sbjct: 61  DGAAYYERVVRLLADMDDAETSLSAASASPRGRLRVDVPSPFARLILIPALPAFHARHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +D+  +  DC +R  +P    SL+ R +  + +  YA+P YL     P 
Sbjct: 121 IQLDMGVSDRVVDVIGENVDCVVRGGEP-TDRSLVARHIGDLRLGVYASPAYLARAGTPS 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLG 238
              EL    H ++ F  L  +  +   +    D      R    L V+   + +   + G
Sbjct: 180 HPAELDDAHHRVVGF--LWARTGKTLPFAMACDGEQVHVRGRYVLAVDDGNAYLAAGLAG 237

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  LPDY+    + N  LV +          +Y  +P     + KL+ F +++  
Sbjct: 238 LGILWLPDYMAAAYRANGELVPLFAQWQLEPMPMYVAFPPNRHVSAKLRVFVDWVAE 294


>gi|322831725|ref|YP_004211752.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|328725476|ref|XP_003248492.1| PREDICTED: uncharacterized HTH-type transcriptional regulator
           yafC-like [Acyrthosiphon pisum]
 gi|321166926|gb|ADW72625.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 302

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 135/294 (45%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA + SF  A   L +S S++ + I+ +ET + ++LF+R  R +TLT +G
Sbjct: 3   NLSSLNTFVQVAETRSFVAAGRILGVSASAVGKSIARMETRLNVRLFHRSTRSVTLTVEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        +  +LE  + EL + +  P G+LR++        LL   L EF+  YPDI 
Sbjct: 63  TLFLERCRRIVAELEAAESELSQLAESPRGRLRLSLPQ--VSTLLLPVLGEFMRRYPDIG 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ +D+  +  D  +R  + +  S L  RKL T H     AP Y +    P   
Sbjct: 121 LDLDFTDRIVDVVEEGFDAVVRTGQ-LADSRLSMRKLGTFHHLLVGAPDYFEQYGTPAKP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL +H  + F       +E +      D  +       +  N+  +   + + G GIA 
Sbjct: 180 QELVEHRCLHFRFPNSGKLEPWPLPEYQDLSLPV----SMVCNNIETRQCFALQGLGIAC 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPD+ ++       LV +++D +  S   Y  +P     T KL+ F +F+  + 
Sbjct: 236 LPDFSIRKELAGGQLVTVLDDYVKRSGDFYILWPSGGYMTPKLRVFIDFLSERV 289


>gi|197336991|ref|YP_002157609.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314243|gb|ACH63692.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 292

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 150/292 (51%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L VF  VAR G+FT AA +L+ +QS++S++I+ LE +VGI LF+RHAR ++LT 
Sbjct: 1   MDKFDCLNVFTRVARLGTFTAAANELNTTQSAVSKKIAWLEKQVGITLFHRHARAISLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  R+   +  ++   + +L++     SG L+++         L   L EFL L+P+
Sbjct: 61  GGKQYLRLALNLIDEMNLVESQLRQEQTSISGTLKLSVPSAFSIQKLSVPLNEFLNLHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + + +K +D+     D AIR    ++ S L  +  +   +  +A+P YL+      
Sbjct: 121 LSVDVSVSDKFVDLVESDIDIAIRAAY-LKDSGLKAKWFMDNELAYFASPDYLEKHPPIE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +T+    P  +    W     +         ++ +S   ++Q   LG G+
Sbjct: 180 IADDLAQHQCLTYSLSTPSNL----WRFNDGKETKIKIKEQVRSDSPEMLVQMAKLGQGV 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +P ++V+    + +L ++++   T    +Y  Y ++   + +++AF +FI
Sbjct: 236 AAMPKWMVEHELKSGSLTQVLDQYKTVKLPMYMVYKDSEHQSQRIRAFIDFI 287


>gi|186476128|ref|YP_001857598.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192587|gb|ACC70552.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 300

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 139/293 (47%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA+   ++ + I R+I  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDRFKQIETFVTVAARGSLSAAAQAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTY 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + H ++  +  +    VK SG LR++     G+  +   +  F + +PD
Sbjct: 61  EGSAFLEDCQRIIHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  DCAIRL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSISLDLSDRMVDLVNEGFDCAIRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRAAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L  HN +  G       +   W+      +   ++S  ++ +    + ++C+ G G
Sbjct: 180 TLADLAHHNCLALG---ASANQQRGWVFQQGDKVVTIKVSGTMECSDGAVLHEWCLEGYG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +    +LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGADIAAGSLVSVLDNHAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|7188597|gb|AAF37819.1|AF190471_1 CrgA [Neisseria meningitidis]
          Length = 299

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRGQRILQEMAAAETEMLAVHEIPQGVLRVDSAMPMVLHLLAPLATKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSAEELAGHQCLGFTE--PGSLNTWAVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++V ++     L+ ++ +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEEL 293


>gi|293396447|ref|ZP_06640724.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291421049|gb|EFE94301.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 302

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 141/296 (47%), Gaps = 7/296 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +    +  F    ++GS+T AA  L LS+S+I + I  LET +G++L  R  R L+L
Sbjct: 1   MEINSIGDIAAFVAAVKAGSYTQAAGSLGLSRSAIGKSIVRLETRMGVRLLNRTTRSLSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G  +     ++   LE     +    VKP+G LR++  +  GQ  +   L  +L  +
Sbjct: 61  TDEGRVMFDRCRQILEDLEEVDATMAMRRVKPTGTLRLSAPLSFGQRHILPILDIYLKKW 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+++ ++   ++ +D+  +  D AIR+ +P   S ++ R + +  +   A+P YL +   
Sbjct: 121 PELRAEVSFSDRFVDLIEEGFDIAIRIGEPRDDSRILTRTIASQRIVTCASPDYLSSRGV 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + ++L  H+ I       +    F     V    G  R   L ++S  ++ +  + G 
Sbjct: 181 PQTPEQLTHHDTIFLLSAEKRRCWRFTTPEGVFVYDGPGR---LNLDSSEAMRESAIAGF 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP Y++ D+     L+ ++E    P   +   YP     + +++AF + +  
Sbjct: 238 GIVHLPTYLLADDLRRGKLIPVLEKYPFPPEPIRIIYPSKRHLSPRIRAFIDLLVA 293


>gi|311108649|ref|YP_003981502.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763338|gb|ADP18787.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           175 [Achromobacter xylosoxidans A8]
          Length = 302

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 141/292 (48%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ +R F  +   GS   AAE L +S + +S+Q+  LE+ +G  L  R  R ++LT+ G
Sbjct: 3   TFNYMRAFRRIVELGSLAKAAENLDMSSAGLSKQLRALESHLGAVLIQRTTRKMSLTDTG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +     +  +L+  +  ++  S   SG+LR+   +    ++L   L  FL  YPD++
Sbjct: 63  AAYYAECCRLLDELDALEKSVKRESRLVSGRLRVNAPVSFALSVLSPLLARFLRQYPDLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L ++++ +D      D +IRLR  +  SSLI R+L ++     AAP YL +   P S+
Sbjct: 123 LDLAMEDRLVDAVGQGFDVSIRLRAQLDDSSLIARRLASLTQVLCAAPSYLDSRGRPDSV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L  H+++++                   P+  P  + +QVN+ L +      G GI  
Sbjct: 183 EALRGHDILSYSLAESPGAVADEETGQQADPLAGP--AQVQVNNSLMLRDLLEAGLGIGA 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP ++      +  LVR++  +      VY  YP +     K+KAF +F+  
Sbjct: 241 LPSFLAAPAIASGRLVRVLPQLPAAPRHVYAVYPTSRHLQPKVKAFVDFLVA 292


>gi|163858800|ref|YP_001633098.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262528|emb|CAP44831.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 367

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 131/296 (44%), Gaps = 6/296 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            +L++   + R+GSF+ AA ++ ++ +++S++++ +E  +G++L  R+ R ++LT +G  
Sbjct: 68  QELQLLVELVRAGSFSAAAREMGVTTAAVSKRLAQIEDRLGVRLLNRNTRRISLTAEGEL 127

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +E     +     +P G L++   +  G++ +   + +F   YP +++Q
Sbjct: 128 YLENARRILDDIEHLDQLMANRQAQPRGLLKVNAPLGFGRSYIAPAIVQFARRYPKVEVQ 187

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +   D   D  D AIR    I  + LI R++        AAP YLK    P + Q+
Sbjct: 188 LQLTDAPGDFVQDAFDVAIRFGD-IPDARLIARRIAPNRRLVCAAPAYLKKHGRPQTPQD 246

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  I                   DR         L  N     + + + G GI    
Sbjct: 247 LARHQCIVLRQNDDTYGLWR--FTRGDRSDTVKVRGGLSSNDGEVTLTWGLAGLGILQRA 304

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           ++ +     +  L  +++D   P   ++  +PE    + K++ F +F+    +D +
Sbjct: 305 EWDLARYLRSGRLELLLQDYALPPADIHAVFPERNHLSAKVRVFIDFLVDYFQDRR 360


>gi|325498364|gb|EGC96223.1| transcriptional regulator, lysR family [Escherichia fergusonii
           ECD227]
          Length = 297

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  I  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANALPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W    +      R+   L  N     +   + G GIA
Sbjct: 185 HELQNHQCINM--RLPTAGGIYHWEFECEGKPLRVRVDGQLTFNLLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 293


>gi|312959668|ref|ZP_07774185.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311286385|gb|EFQ64949.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 298

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F   A  GS+  AAE+L +S   +++ ++ LE+ +G +L  R  R  +LTE
Sbjct: 2   MDRLSSMNAFVTAAELGSYARAAERLGMSPQMVAKHVAALESRLGARLLNRTTRRQSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +     +  + E      Q  +  P GKL+I   +  G + L   +  FL  +PD
Sbjct: 62  LGSAYYERCKHILTEAEAADSLAQIMNDTPRGKLKITAPVTFGSHSLMPLITGFLRDHPD 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L L ++ +D+  +  + A R+  P+ ++ L  R L    +   AAP YL     P 
Sbjct: 122 VEIDLHLTDRFVDLVEEGYEAAFRIG-PLATTGLTARPLAPYRLVVCAAPAYLAARGTPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L+ H  + +         ++ +      P      S LQ+N   ++M   + G GI
Sbjct: 181 VPADLEHHECLGYAFWSRPADREWVFFQGT-TPYKVQVASRLQINESRALMSAALDGFGI 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L P+  ++       LVR++ D   PS +++  Y    + T KL+ F   +  +
Sbjct: 240 VLGPEDFLRGALARGELVRVLPDFDAPSRSMHLVYTANRQRTAKLRRFVEAVVQR 294


>gi|171322119|ref|ZP_02910982.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171092573|gb|EDT37886.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 301

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ EL +HN +    L     +   W    D  +   R+   ++ +    + ++C+ G G
Sbjct: 180 TLAELARHNCLA---LAANANQQRGWAFQEDDRVVSIRVNGTMECSDGAVLHEWCLAGYG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V D+     LV +++    P   ++  +P+      +++ F +++
Sbjct: 237 LAWRSWWEVGDDIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDYL 289


>gi|270262684|ref|ZP_06190955.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043368|gb|EFA16461.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 299

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  VA + SF+ A  QL +S S++ + ++ +E  + ++LF+R  R +TLT 
Sbjct: 1   MDSLSGILAFVQVAETRSFSDAGRQLGVSSSAVGKSVARMEERLEVRLFHRSTRSVTLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  ++   ++EL ++   P GKLRI+    L   L+   L  F+  YPD
Sbjct: 61  EGALFLERCRRILAEIAAAELELADTRAAPRGKLRISLP--LVSGLMMPVLTAFMHRYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +DI  +  D  +R  +P   S L+ R+L    +   A+P YLK    P 
Sbjct: 119 IELDVDFSDRLVDIVEEGFDAVVRTGEP-ADSRLVSRRLGVFELVLVASPDYLKRRGVPE 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  +          E +         + E   + +  N+  +++Q    G GI
Sbjct: 178 KPADLLGHACLQHKFPTTGRFEPWPLRLLPGEALPE-LPATMICNTTEALVQVAQAGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LPD++V +   +  L R++E       T    +P +     KL+ F +F+  + 
Sbjct: 237 ACLPDFMVHEALQSGELRRVLESYTEHQGTFRVIWPSSKYLAPKLRVFIDFLGERL 292


>gi|62317125|ref|YP_222978.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269112|ref|YP_418403.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus
           2308]
 gi|189022388|ref|YP_001932129.1| transcriptional regulator, LysR family [Brucella abortus S19]
 gi|254698408|ref|ZP_05160236.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254731855|ref|ZP_05190433.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 4 str. 292]
 gi|260759625|ref|ZP_05871973.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260762868|ref|ZP_05875200.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|62197318|gb|AAX75617.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82939386|emb|CAJ12339.1| Bacterial regulatory protein LysR, HTH motif:Helix-turn-helix,
           Fis-type:LysR substrate binding domain [Brucella
           melitensis biovar Abortus 2308]
 gi|189020962|gb|ACD73683.1| transcriptional regulator, LysR family [Brucella abortus S19]
 gi|260669943|gb|EEX56883.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260673289|gb|EEX60110.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
          Length = 306

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  V  +GS + AA  L LS + +S+++  LE  +G  L     R + LT
Sbjct: 1   MMSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTSLLQCTTRQIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 61  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P
Sbjct: 121 DLTVNMQLSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI       LQ NS   + +  + G G
Sbjct: 180 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPTGPLQTNSSEIVREAVLAGLG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 234 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|114327592|ref|YP_744748.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315766|gb|ABI61826.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 331

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 141/289 (48%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D  R+F  V    SFT AA+ L + +SS+S  +  LE  VG +L +R  R +  T+ G+
Sbjct: 34  IDLFRIFSRVVECASFTRAADTLGMPRSSVSAAVQELEGRVGARLLHRTTRKVAPTQDGA 93

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    V   +E T+   ++ + +PSG+LRI     +G+ ++   L EFL LYP I I
Sbjct: 94  AFYQRCQRVIADVEDTENLFRQMAAQPSGRLRIDVPGRIGRLIIAPALPEFLDLYPQINI 153

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +++  D  DC +R+  P+  S LI R +  + +   A+P YL     P ++ 
Sbjct: 154 DLGVTDRAVNLVEDSLDCVLRVG-PLSDSGLIARPIGRLALINVASPAYLARHGMPQALD 212

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  + +       +ED+ W+         P    + VNS  + +  C+ G G+  +
Sbjct: 213 DLGQHWAVNYASPSSGRVEDWEWMED-GTLHTLPMRGRVTVNSAEAYIACCLAGLGLIQI 271

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y V+   D   L+ IM +       +   YP     + +L+ F +++
Sbjct: 272 PAYDVRSHLDTGELIEIMPEYRADPMPMTLLYPHRQHLSRRLQIFADWL 320


>gi|92112889|ref|YP_572817.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91795979|gb|ABE58118.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 306

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 142/296 (47%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AA+ LH+S++S+++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMRAFARVVETGSFTKAADTLHMSRTSVTQLVQQLEARLRVRLLNRTTRKVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   L+  +  L  ++ +P G+LR+     L + +L   L EF   YPD
Sbjct: 61  DGAAYYERVLRLLADLDDAETSLSGAASEPRGRLRVDVPSPLARMILIPALPEFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L + ++ +DI  +  DC +R    +   SL+ R++  + +  YA+P YL+    P 
Sbjct: 121 IQLDLGVSDRMVDIIDEKVDCVVR-GGELTDQSLMARRIGDLPLGVYASPSYLERAGSPA 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              +L+   H ++ F  L  +  + F  +   +  I       L  +   S +   + G 
Sbjct: 180 HPGDLENTHHRVVGF--LGSRFGKPFA-MHRREESIKVQGRYVLSTDDGNSYLAAGLAGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LPDY+ +++     LV + ED       +Y  YP     + KL+ F  +I  
Sbjct: 237 GILWLPDYMAREHLASGELVALFEDWRLDPMPLYLAYPPNRHVSAKLRVFIEWIAE 292


>gi|330960963|gb|EGH61223.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 305

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 137/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AA+ LHL ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFAKAADSLHLPRASVTILIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +        +P G LRI   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEAAFSAKGAEPKGLLRIDLPVSLGRMVVIPALPEFTRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL     PL
Sbjct: 121 ISLEIGMSDRPVDLIREGVDCVLRAGAAL-DDTLVARPLGSLTQITCASRDYLDRYGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
            +Q+L +H +I +        + +      D   G+  ++C + VNS    +  C  G G
Sbjct: 180 DLQDLAQHQVIEY--FSASTSKRYGLEFMTDGWGGDHGMTCSVSVNSADGYVAACEAGFG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  +P Y +     +  LV ++ +   P+  +   YP   + + +++ F +++  
Sbjct: 238 LVQVPRYHIATQLRSGALVEVLREYRPPALPLTALYPPHRQLSRRVRVFVDWLVE 292


>gi|184157763|ref|YP_001846102.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332876450|ref|ZP_08444217.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209357|gb|ACC56755.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322508074|gb|ADX03528.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323517655|gb|ADX92036.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735308|gb|EGJ66368.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 311

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 133/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G 
Sbjct: 10  LNEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I I
Sbjct: 70  QVYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++L+++ +D+  D  D A+R+ +   S  L+ RKL+ I     A P YL     P    
Sbjct: 130 QMLLEDRYVDLIDDGVDLALRITEQ-PSGGLMGRKLIDIDHLVCATPEYLAKHGTPNHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I  G+        F      ++ I          N     +   +   GIA L
Sbjct: 189 DLKQHECIYLGEQASDSKWKFQ---QGNKSISVAVRGRYAANHTGVRLSAALQHLGIASL 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++ +       LV+++ D    ++    ++  YP       KL     ++  K 
Sbjct: 246 PYFVARHALQQGTLVQVLPDWYFKTYYSGGLWLLYPPTRHVPPKLSVLIQYLADKL 301


>gi|254247307|ref|ZP_04940628.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124872083|gb|EAY63799.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 342

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 142/299 (47%), Gaps = 14/299 (4%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           S D    + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT
Sbjct: 18  SMDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLT 77

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+  +    ++  ++       Q  + KPSG LR+     LG+ ++  +L  F   YP
Sbjct: 78  PEGAAYYEHCMKIIAEIAEADASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYP 137

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP
Sbjct: 138 DITLELGLSDRYVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLKRVTCASPDYLARHGEP 196

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
             I +L +H+ + F            W+  +D    E R+   + VN   + +   + G 
Sbjct: 197 NEIADLVEHHAVNFRS--SHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGF 254

Query: 240 GIA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+       +LP  +   + +LV ++ D       +   YP     + K++ F ++I  
Sbjct: 255 GMIQPTLFMVLPHLL---DGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWIAE 310


>gi|293603416|ref|ZP_06685843.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292818189|gb|EFF77243.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 311

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 135/295 (45%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ AA  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLYYFSQVVEQGGFSAAARALDIPKSRLSRRISHLEESLGVRLLQRTTRRLRLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+          +++   +P+G + ++  + + Q++L   L EFL  +P I 
Sbjct: 63  ERYLHYCREMAASARAADDAMRQLQSEPAGPVIVSCPVSIAQDVLAPLLPEFLDAWPAIS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++ N+ +D+  +  D A+R+R  +   + L+ R L T      A+P YL+    P +
Sbjct: 123 VQLLVTNRRVDLIREGVDLALRVRTKLDTDAELVVRHLGTARGTLVASPGYLQRRGTPDT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H  ++F D  P+    +         +       L  N ++ + +  V G GIA
Sbjct: 183 PQDLASHTTLSFSD--PQNEVRWPLRNDKGEEVQIELKPQLSCNDFIVLTEAAVRGRGIA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP    ++      LV ++    +P   V+  YP        ++   +F+  + 
Sbjct: 241 LLPSIATQEQLRRGQLVPVLPQWQSPEGIVHCIYPSRRGMMPAVRTLLDFLSQRL 295


>gi|159186134|ref|NP_356288.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141268|gb|AAK89073.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 142/297 (47%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  R+F  V    SFT AA+ L + +SS+S  +  LE  VG +L  R  R ++ TE
Sbjct: 1   MDRIDLFRIFTRVVDCASFTRAADTLGIPRSSVSAAVQELEGRVGARLLNRTTRKVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +     +   +E T+   ++++ +PSG+LRI     +G+ ++   L +FL LYP 
Sbjct: 61  DGSAFYERCQRLIADVEDTENLFRQTAAQPSGRLRIDVPGRIGRLVIAPALPQFLDLYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L + ++ +D+  D  DC +R+  P+  S LI R +  + +   A+P YL     P 
Sbjct: 121 IDISLGVTDRAVDLVEDNIDCVLRVG-PLSDSGLIARPIGKLRLINVASPAYLAQYGAPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  + +       +E++ W+   D     P  S + VN+  + +  C+ G G+
Sbjct: 180 TPHDLSRHWAVNYASPSSGRVENWEWIEN-DALHSVPMRSRVTVNNAEAYIACCLAGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V+   ++  L+ +M         +   Y      + +L+ F  ++    R
Sbjct: 239 IQIPAYDVRLHLESGELIEVMPGHRAEPMPMTLLYSHRQHLSRRLQVFAEWLEALLR 295


>gi|121611523|ref|YP_999330.1| LysR family transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121556163|gb|ABM60312.1| transcriptional regulator, LysR family [Verminephrobacter eiseniae
           EF01-2]
          Length = 314

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 131/299 (43%), Gaps = 9/299 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W +   F  V   GS + AAE + LS  S SR ++ LE  +G +L  R  R L +T+ G 
Sbjct: 4   WTEYEFFVRVVELGSLSKAAEAMGLSNPSASRHLAALERRLGARLIERSTRRLFVTDVGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R        ++     +  ++  P G LR+  ++ L    +   L  F   YP+I++
Sbjct: 64  DFYRCCKRALDDMQEAVEAVNATTSNPVGVLRVTASLSLSMQHIAPLLPAFAQRYPNIRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++  N+  DI  +  D A+R R+    SSL+ R L T       +P YL+    P   +
Sbjct: 124 KVVAANRYYDIIDNNIDVALRTRESEPDSSLVIRSLATTRRVLAVSPAYLERHGAPRHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H L+ +    P  +         D  +  P    L+ N    +    V G GI + 
Sbjct: 184 ELAEHRLLLYTYHAPDSLT----FQRGDEAVTIPTKPMLEANDGQVLRVAGVQGLGIMVQ 239

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KARDWK 298
           P Y++ D+     L+ +M D   P  +V   Y        K +AF +F+    + +D++
Sbjct: 240 PMYVIYDDLVADRLIPVMTDWKLPPMSVNIVYQHRRLVPAKTRAFIDFLVEDFQRQDYE 298


>gi|187924466|ref|YP_001896108.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715660|gb|ACD16884.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 300

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 134/292 (45%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDRFKQIETFVTVAAKGSLSAAASAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + H ++  +  +    VK SG LR++     G+  +   +  F + +PD
Sbjct: 61  EGSAFLEDCQRIIHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSITLDLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPSYLSRRGAPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  HN +  G    +           D+ +       ++ +    + ++C+ G G+
Sbjct: 180 SLADLAHHNCLALGASANQQRGWM--FQQGDKVVSIKVSGTMECSDGAVLHEWCLEGYGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A    + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 238 AWRSWWEVGTDIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|300717464|ref|YP_003742267.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299063300|emb|CAX60420.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 305

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 146/303 (48%), Gaps = 11/303 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   + +F  +   GS + A  QL LS + +S++++ +E ++G++LF+R  R ++LT
Sbjct: 1   MLKDIRDIALFNAIVACGSLSAAGRQLGLSLAVVSKRLTQMEQQLGVRLFHRTTRHVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G         +  +L++ +  L     K SG LRI ++  +GQ  L   +  F+  + 
Sbjct: 61  DEGLVFTEHALRLQQELDSIESALSSRQGKASGTLRITSSHSMGQRWLSPIVTRFMQQHQ 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L L ++ ID++    D AIR    +  S L+ R+LV       A+P YL+   EP
Sbjct: 121 SVKLHLHLSDRVIDLAASGYDLAIRYGA-LADSRLVARELVPNQRVLCASPAYLQQAGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           LS++EL  H+ I  GD          W           +I +   VN+  +     + G+
Sbjct: 180 LSLEELSAHSCIISGDNPVT-----EWTFGAGESQRSVQINARFHVNTGEAAHGLALHGA 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-AR 295
           GI +   + V D+     LV+++ D   P+  ++  +    +   +++ F +++    A+
Sbjct: 235 GIVVKSVWDVADDLKSGKLVQVLTDHPLPAAPLHAIWLNGKQQPPRVRLFVDYLREALAQ 294

Query: 296 DWK 298
            W+
Sbjct: 295 QWQ 297


>gi|59713236|ref|YP_206011.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59481484|gb|AAW87123.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 300

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 141/294 (47%), Gaps = 12/294 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++AR G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LTE
Sbjct: 5   RINLTDIRSFVLIARLGNFTKAAETLDVSRSHVSRQISSLEKQMGVTLLIRTTRTLRLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G   +    +  H ++   +   +   K  G+++I      LG+  L   +  F+  YP
Sbjct: 65  AGKHFYHQCEQALHTIDQALLSAVDDVEKVQGEIKINCVGGYLGEVFLADIVNTFMQQYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I L   +  +D+  +  D A R+   ++ S  + +KL+ I M   A+P YL+    P
Sbjct: 125 DVSISLDFSSNRVDLIEEEFDIAFRMGS-LEDSGFVAKKLLDIEMGTLASPKYLQQYGRP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
              +EL +H+ +T        +  +++ + V++   +  I   LQ  +   ++   + G+
Sbjct: 184 SHPKELQQHHCLT------GSVRKWHFQSLVNKEHYDVSIKGNLQCKNGRVLVAGAIAGN 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P    +   D+  LV++ E+   P+      Y        +++ F +F+
Sbjct: 238 GIIRVPLIYCQQELDDKKLVQVFEEWGIPTVDFSAIYHRDRYQPKRIRTFIDFV 291


>gi|152997682|ref|YP_001342517.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150838606|gb|ABR72582.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 290

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 138/293 (47%), Gaps = 13/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V R G F+ AA +L +S S ISR I+ LE E+G  L +R  R + L+E G   +
Sbjct: 1   MEAFVEVVRQGGFSAAAIKLSVSASHISRLITQLEAELGTTLLFRTTRRIRLSEAGELYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   L + +  +   +  P G  ++      G+  +   + +FLL +P I++   
Sbjct: 61  QHCRGLPEALSSAEEVISSLNQAPIGAFKMTCATTFGERYIAPLMNDFLLNHPKIELDFH 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D AIR+   ++ SS + R+L     +  A+  Y+     P ++ EL+
Sbjct: 121 LTNRSVDLIEEGYDLAIRMGA-MKDSSHLSRRLCDRVEYLCASRDYIDQHGMPHTLAELN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           KH  +             +WL   D    E ++S   + NS  +++     G GIA LPD
Sbjct: 180 KHRCLI--------GSKNHWLFQQDGQRKEAKVSSNWRSNSGPALLDAVRKGLGIAQLPD 231

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           Y V D+     L+ ++     P   V+  YP+  + + KL++  +++  + + 
Sbjct: 232 YYVADDLASGKLIPLLTQYQYPYSGVWLVYPKVRQPSPKLQSICDYLIQRFKQ 284


>gi|170700000|ref|ZP_02891026.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135100|gb|EDT03402.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 314

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + VF  V  +G F  AAE   +S + +   I  LE  +G +L  R  R  +LTE
Sbjct: 1   MDRFTSMSVFVRVVETGGFAAAAEVTGISAAMVGNHIRALEAHLGARLLNRTTRQQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +  ++E  + + +E +    G LR+   +  G   L   L  FL   P+
Sbjct: 61  VGRTYYGQCVSILSQMELAESDAREMTAVARGVLRVTAPVSFGAQCLTPALSRFLEQAPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L ++ +++  +  D AIR+   + +S+LI R+L+   M   AAP YL+    P 
Sbjct: 121 VEVELTLSDRLVELVNEGFDVAIRIGH-LPASNLIARQLIPYRMVVCAAPAYLERHGTPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  ++FG  + +   ++ +               L VN   ++    + G+GI
Sbjct: 180 DPADLIHHECLSFG--VHRRTREWRFYEANGESRAVQVGGRLTVNHGPALRMAALTGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + P+ +V D+    +LVR+ E+   P   ++  Y   +    K++ F NF+    R
Sbjct: 238 LMQPELLVADDLRNGSLVRLFENERMPERPMHLVYQRDINMPLKVRHFVNFVLDTWR 294


>gi|323525836|ref|YP_004227989.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382838|gb|ADX54929.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 333

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 6/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE G+
Sbjct: 4   LQSMRVFVRVADLGSFVRAANALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   LE  +  L     +P G LRI   +  G   L   ++ +   YP++  
Sbjct: 64  TYLERVRHILDDLEGVEQMLAARHHEPVGTLRIVAPVVFGLQSLAPAVQSYAARYPEVVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++  D+  +  D  I + +P +S+S++ R+L T  +   A P YL     P    
Sbjct: 124 DVTLADRQADLVEEGFDVGIMVGRPARSASIVTRRLTTCQLTVCATPDYLAQHGTPARPG 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +      P+   +    +  +  +     + +  N+   + Q+ +LG G+A+L
Sbjct: 184 DLLAHPCL---SRPPEQGGEERLFSGPEGLVRVRTANAIAANNSEMLRQFALLGMGVAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P Y++  +     LV ++ D   P   +   YP  L    K++ F + + 
Sbjct: 241 PSYLIGRDLAAGRLVELLRDYRLPEIEITIAYPSRLHLPAKVRTFVDHLV 290


>gi|206559339|ref|YP_002230100.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035377|emb|CAR51253.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 324

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 140/295 (47%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++       Q  + KPSG LR+     LG+ ++  +L  F   YPD
Sbjct: 61  EGAAYYEHCMKIIAEIAEADASFQTGNRKPSGVLRVHMPSSLGRRIVLPSLSIFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP 
Sbjct: 121 ITLELGLSDRYVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLKRVTCASPDYLARHGEPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I +L +H+ + F            W+  +D    E R+   + VN   + +   + G G
Sbjct: 180 EIADLVEHHAVNFRS--SHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     + +LV ++ D       +   YP     + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPNLLDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWIAE 292


>gi|289677341|ref|ZP_06498231.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
          Length = 322

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   + + +  F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++
Sbjct: 1   MELRNLNDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSM 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G  L+     V   L+  +  L      PSG+LRI+  + LG+  +  +++  L  +
Sbjct: 61  TDEGQILYERCVGVLQDLDDVEDALAFRRSTPSGRLRISLPVALGRLHVLQHIECCLNDW 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +   ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    E
Sbjct: 121 PSLSVDITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHDE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + ++L +H  + F         +F         +       LQ++S  S+ Q  + G 
Sbjct: 181 PKTPEDLSEHQCLHFVSGGRLLPWNFR---VNGSSVPVTHGGRLQMDSAESLHQSAIAGL 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GIA LP Y+V D+     LV+++      +  +   YP     + K++ F +
Sbjct: 238 GIATLPSYVVNDDLRSGKLVQLLAGYAEAAEPIRVIYPSKRHLSPKIRLFID 289


>gi|218463758|ref|ZP_03503849.1| LysR family transcriptional regulator [Rhizobium etli Kim 5]
          Length = 303

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 125/292 (42%), Gaps = 8/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF    + GS + A+ +L +S + + + ++ LE  +G +L  R  R  +LT+ G 
Sbjct: 4   FRSMQVFVTTVQEGSMSAASGKLGISPAMVGQHVAALEERLGTRLLNRTTRRQSLTDFGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++  ++     + + S  KP G L++      G  +L   L  +  + P++ +
Sbjct: 64  SYLEQCRDILERVAIADQDAEASQTKPRGLLKVTAPTTFGAEVLMPALPRYREIAPEVML 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++++DI  +  D AIR+   +  S LI R+L    M   A+P YL     P    
Sbjct: 124 DITLTDRNVDIVDEGFDIAIRIGD-LPDSRLIARRLAPYRMMICASPDYLARHGNPAHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H  I F    P     +      +     PR+  + VNS  ++      G GI + 
Sbjct: 183 ALSGHETIGF---TPAARSPWRLSKGKEEVEVVPRLP-ISVNSGQAVRMAARAGLGIVMQ 238

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  ++  +     LV++  D       +   Y    + T ++++  +FI  +
Sbjct: 239 PAILLASDIRAGILVQLFPDWHLRERPMSLVYHRDRRMTPRVRSIISFIISE 290


>gi|262173316|ref|ZP_06040993.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
 gi|261890674|gb|EEY36661.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
          Length = 299

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIVRNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KHN + +        +                      ++  ++ +  + G GIA +P
Sbjct: 183 LVKHNCLQYAYQTTGATDWE--FKGAKGNYIVKVSGTFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV +  + +     +Y  YP   +   K++     I  +
Sbjct: 241 RCLVYHDFRNGELVDVFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRTR 291


>gi|307546886|ref|YP_003899365.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218910|emb|CBV44180.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 305

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 12/289 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  VA  GS+T AAE L LS++ +SR +  LE  +  +L  R  R L LTE G 
Sbjct: 4   LDAMTAFVRVAELGSYTRAAEALALSRTRVSRLVMELEEHLQARLLQRTTRRLHLTEVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +   LE  + E+        G LR+   +  G   L   +  F++ +P++Q+
Sbjct: 64  RYLAHAQGILQALEDARAEVGADVHAMHGHLRLNGPMSFGIRHLSPLVASFMVQHPELQV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L+++ +D+  +  D AIR+   +  S+L+ R+L    M   A+P YL     P   +
Sbjct: 124 RLDLNDRRVDLLEEGYDLAIRIGD-LPDSTLVARRLTHCRMVLCASPEYLATHGAPRRPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E+  H  + +        +       +  P        L+ N+   +      G GIA  
Sbjct: 183 EIAGHRCLRYLGAYSGDWQLGGQQHDISGP--------LESNNGDVLTPAAEAGLGIAHQ 234

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P ++V D+     LV I  D       V+  YP       K+  F +F+
Sbjct: 235 PSFLVADSIRAGRLVPIGTDWPPQILGVHGIYPARRHLPTKVARFLDFL 283


>gi|251836996|pdb|3HHG|A Chain A, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251836997|pdb|3HHG|B Chain B, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251836998|pdb|3HHG|C Chain C, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251836999|pdb|3HHG|D Chain D, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251837000|pdb|3HHG|E Chain E, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251837001|pdb|3HHG|F Chain F, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251837002|pdb|3HHG|G Chain G, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis.
 gi|251837003|pdb|3HHG|H Chain H, Structure Of Crga, A Lysr-Type Transcriptional Regulator
           From Neisseria Meningitidis
          Length = 306

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G L + + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLSVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEELAGHQCLGFTE--PGSLNTWAVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  L D++V ++     L+ ++ +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IVCLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEEL 293


>gi|239834478|ref|ZP_04682806.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239822541|gb|EEQ94110.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 304

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 141/292 (48%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE
Sbjct: 1   MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+
Sbjct: 61  AGHTYYHRAVEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P 
Sbjct: 121 IVLDVRLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L     I   D   +   ++++  T    +  P    ++VNS ++     + G G 
Sbjct: 180 RPEDLADRPCII--DTNARSRNNWHFRNTDGSMMTVPVNGPIEVNSPVATKNAALAGLGF 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++LP +I ++      LV  +++ I     +Y  YP       K++A  +F+
Sbjct: 238 SMLPAFIAEEEIERGRLVSCLDEFIVKDGGIYAVYPHRRYLPAKIRALVDFL 289


>gi|218463557|ref|ZP_03503648.1| transcriptional regulator, LysR family protein [Rhizobium etli Kim
           5]
          Length = 304

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E+G++L +R  R L  T+ 
Sbjct: 2   LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLHRTTRSLHPTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +S+    +E   + L E+  +P+G +RI+  +  G + LQ  + + L  YP  
Sbjct: 62  GRLYYEQSSQALRTIEGANLRLAEARTEPAGTIRISAPVGFGGHFLQDAIFDLLATYPKS 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++  +  D A R    ++ S+LI RKL + H    A+P YL  C  P  
Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRTG-ILEDSTLIARKLGSTHRLLCASPDYLARCGAPDR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H+ +  G            L +               N   ++M   + G GIA
Sbjct: 181 PADLVRHDCVIAGQSTHAQW----LLESPHGQETVTVSGRFAANEMQAVMATAIAGYGIA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP  +      +  L R+++   TP+  +Y  YP +      +K F  
Sbjct: 237 RLPHGVANGFIRDGRLCRVLDGYTTPAGGLYVVYPSSRHLPPLVKTFIE 285


>gi|227818763|ref|YP_002822734.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36959018|gb|AAQ87443.1| Transcriptional regulators, LysR family [Sinorhizobium fredii
           NGR234]
 gi|227337762|gb|ACP21981.1| putative LysR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 297

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 144/294 (48%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  V+   SFT AA++L +S++++  Q+  LE  +GI+LF R  R + LTE G+
Sbjct: 7   LDGIAAFLTVSTHLSFTKAADELGMSRATVGAQVRQLEDRLGIRLFQRSTRKVVLTEAGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 S +  ++   +        +  G+LR++   DLG  ++   + EFL L P + +
Sbjct: 67  AYREALSGILPQIREAERAATSFQKEAVGRLRVSAPPDLGHLVIVPAVSEFLKLNPAVSL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +++  D  D AIR R  +   +LI R+L T  +   A+P Y+     P S  
Sbjct: 127 ELDLSHRAVNLVEDGFDLAIRGRLEV-DINLITRQLATSQIVICASPAYIDEHGAPESPH 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + F +L    +  F+           P +  L++N  L +    +LG GI LL
Sbjct: 186 DLAHHSCLHFAELRWGRIWPFS---RNGEEFRIPIVPRLELNHSLGLRDAALLGVGIVLL 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           PD+IV ++     L+R++ D    +  +   YP       K++ F +F+  K R
Sbjct: 243 PDFIVGEDLRQGRLIRLLPDWHISTIQLQAVYPANRHIAVKVRRFVSFLAGKLR 296


>gi|207744826|ref|YP_002261218.1| hypothetical protein RSIPO_03040 [Ralstonia solanacearum IPO1609]
 gi|206596236|emb|CAQ63163.1| hypothetical protein RSIPO_03040 [Ralstonia solanacearum IPO1609]
          Length = 291

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 128/290 (44%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +G+FT AA QL +S   + + +  LET +G +L  R  R  +LT+ G   +
Sbjct: 1   METFVAVVDTGNFTEAAVQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTDAGRVFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  ++   +  ++    +PSG LR++     G  ++      F   +P ++++L 
Sbjct: 61  DDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQVRVELD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D++ +  D A+R+  P+  + L+ + L    M   A+P YL    +P +  +L 
Sbjct: 121 LSNRMVDLADEGFDLAVRIG-PLGDADLVAKPLCAYRMAICASPDYLARHGQPETPADLP 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  ++    +     +   L+  D P           N    +    + G+G+ L P+ 
Sbjct: 180 AHRCLSH---MVWNRRNAWQLSGWDGPTSWRDDPAFSCNDGHGLRMAAIAGAGLLLQPEV 236

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +V ++     LVR+++        ++  Y +  +   KL  F + +   A
Sbjct: 237 LVAEDLASGRLVRVLQPYAPEPRPIHLVYRQDRRPLPKLTGFVDHLLQHA 286


>gi|107023592|ref|YP_621919.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690676|ref|YP_836299.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893781|gb|ABF76946.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648765|gb|ABK09406.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 324

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++       Q  + KPSG LR+     LG+ ++  +L  F   YPD
Sbjct: 61  EGAAYYEHCMKIIAEIAEADASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP 
Sbjct: 121 ITLELGLSDRYVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLKRVTCASPDYLARHGEPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I +L +H+ + F            W+  +D    E R+   + VN   + +   + G G
Sbjct: 180 EIADLVEHHAVNFRS--SHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   + +LV ++ D       +   YP     + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWIAE 292


>gi|299531717|ref|ZP_07045121.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298720276|gb|EFI61229.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 308

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  V  +G+FT AA+ L + ++S+++ +  LE  + +KL  R  R +T+T 
Sbjct: 1   MDQIQAMRIFARVVEAGTFTRAADSLQMPKASVTKNVQALEERLRVKLLNRTTRRVTVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +    +  +  + ++   P G+LR+     + + L+  +L EF   YP+
Sbjct: 61  DGAAYYDRAVRLLADFDDLEASVSQARTTPRGRLRVDVGTTVARLLIIPHLSEFQSRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ +D+  D  DC IR    +   SL+ R++  +     AAP YL+    P 
Sbjct: 121 IQIDLGVSDRTVDLISDNVDCVIR-GGELADQSLVARRIGNLEFITVAAPEYLQRHGVPR 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L   H  + +   +                I     + L VN   + +   + G G
Sbjct: 180 HPRDLESGHRNVIYFSPVSARRYPLE-FHKGGEVIEIASPAHLGVNEGNAYISAILAGQG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L  + +    +N  L R++ED   P   +Y  YP     + K++AF +++  
Sbjct: 239 IGQLSRFQIHKYLENGQLQRVLEDWKHPLLPIYVVYPPNSHLSAKVRAFVDWVVE 293


>gi|197337872|ref|YP_002157632.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197315124|gb|ACH64573.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 300

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 141/294 (47%), Gaps = 12/294 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++AR G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LTE
Sbjct: 5   RINLTDIRSFVLIARLGNFTKAAETLDVSRSHVSRQISSLEKQMGVTLLIRTTRTLRLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G   +    +  H ++   +   +   K  G+++I      LG+  L   +  F+  YP
Sbjct: 65  AGKHFYHQCEQALHTIDQALLSAVDDVEKVQGEIKINCVGGYLGEVFLADIVNAFMQQYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I L   +  +D+  +  D A R+   ++ S  + +KL+ I M   A+P YL+    P
Sbjct: 125 DVSISLDFSSNRVDLIEEEFDIAFRMGS-LEDSGFVAKKLLDIEMGTLASPKYLQQYGRP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
              +EL +H+ +T        +  +++ + V++   +  I   LQ  +   ++   + G+
Sbjct: 184 SHPKELQQHHCLT------GSVRKWHFQSLVNKEHYDVSIKGNLQCKNGRVLVAGAIAGN 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P    +   D+  LV++ E+   P+      Y        +++ F +F+
Sbjct: 238 GIIRVPLIYCQQELDDKKLVQVFEEWGIPTVDFSAIYHRDRYQPKRIRTFIDFV 291


>gi|332306024|ref|YP_004433875.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173353|gb|AEE22607.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 301

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 138/296 (46%), Gaps = 14/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D +++F  VA + + + A  +  LS +  S  +S LE  +G++L +R  R ++LT++
Sbjct: 2   INLDYVKLFIRVAATHNISKAGAEFGLSSAVASAHLSKLEESLGVRLIHRTTRKVSLTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        +V    +     ++    K  GKLRI   +      L   L EF+ ++PD+
Sbjct: 62  GEAFLPHARDVLVSADIAVSSVRGG-AKTRGKLRITAPVSFSHIHLIPALNEFMEIFPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L +  +DI     D AIR  + ++ S+LI RKL   +    A+P YLK    P +
Sbjct: 121 SVELRLSDTIVDIVEGGFDVAIRNAE-LKDSALIARKLAIDNRIICASPDYLKKHGRPTT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            + L +HN I         + + NWL    + +   +       ++  ++   C+ G GI
Sbjct: 180 PEALQQHNCINL-------LGNDNWLFKTSKGLLNIKTRGAFTTDNGKAVCDACLNGMGI 232

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +   +I  ++     LV+I+ED       +++  YP +     K++AF ++   +
Sbjct: 233 VMCSTWIAYEHLRAGTLVQILEDYPLEADASIWAVYPSSKLVAPKVRAFIDYFSER 288


>gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151280909|gb|ABR89319.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 304

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 132/296 (44%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F V+ + GS    A +L ++  +++++++ LE  +G++L  R  R +++T
Sbjct: 1   MN-DLSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G       + +  ++E  +  +  S   P G LRI  T   G+  +   + +F+  YP
Sbjct: 60  HEGEIYLAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++QL L ++  ++     D  IR+ + +  + +I RK+        AAP Y+K    P
Sbjct: 120 EIEVQLQLSDRPANLIDQAFDIGIRIGE-MPDARIIARKIAANRRLLCAAPAYIKRHGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L K   I   +           L    R         L  N   + + + + G G
Sbjct: 179 SVPRDLQKLQCIVLRENDAAYGSWH--LHKGKRQESIKVRGALSSNDGETTLAWALAGHG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I +   + V     +  LV ++ D   P   +Y  YPE L  + K+ AF +F+  +
Sbjct: 237 ILMRSQWDVAAYLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDFVSAR 292


>gi|330448395|ref|ZP_08312043.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492586|dbj|GAA06540.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 300

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 5/291 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  V +SG F  AA+ +  S S +S++I  LE  +G++L  R  R ++LT +G 
Sbjct: 7   FDGIALFVQVVKSGGFGAAAQAMGHSNSYVSKEIVKLENRLGVRLLNRTTRSISLTPEGK 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++    E     + +S+V P G L+I+  +  G++ L+     +L  YPD+ I
Sbjct: 67  SYYQECLQLISDAEQAVAHITQSTVAPKGTLKISCPVWFGKHYLKDVFSAYLARYPDVVI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +K ID+  D  D  IR    +  SSLI +++ +  +   A+P Y+     P+   
Sbjct: 127 DLDMSDKAIDVIGDGYDLVIRASAKLDESSLICKRIYSSRICTVASPEYIAKYGRPIHPA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+   + +L    + D+  +              ++ N+    +     G GI  L
Sbjct: 187 ELSSHHCFCYSNLKKSNIWDY--MDKAGNQTSVDVHQRIRSNNTEMSLALVCNGDGIIRL 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P++ ++       L+ + ED + P   VY  YP       K++ F + I  
Sbjct: 245 PEFYIEQQIKTGELILLFEDYVFPMVDVYALYPTRKHLASKVRCFLDLIDE 295


>gi|238025089|ref|YP_002909321.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879754|gb|ACR32086.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 302

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 137/297 (46%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LR+F     +GSFT AA++L LS+  +SR+++ LE  + ++L  R+ R L +TE 
Sbjct: 1   MQLDDLRIFIATVEAGSFTGAADKLLLSKQFVSRRMAALEAALRVRLLNRNTRKLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  ++   +  +     +  G L+I+  +  G + L   + EFL  +P +
Sbjct: 61  GQTFYTHAQRILAEVAQAEEAMSARHTELHGSLKISAPMSFGISHLSPLIAEFLAAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + L ++ +D+  +  D A+R+   +  S+L+ R L T+ M A  +P Y +   EP +
Sbjct: 121 RLDVELSDRRVDLIGEGFDLALRIGA-LADSTLVARTLGTLRMIACCSPAYRRLHGEPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  + +G  +    E      T D          L  N+   +    + G GIA
Sbjct: 180 PADLHGHACLLYGQELRDGWE----FDTADGRRAYDVQGPLLANNGDVVRDAAIAGLGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LLP +IV        LV I+    +P   +   YP+  + +  ++    F+  +  D
Sbjct: 236 LLPQFIVGPALARGELVAILGAHASPPLRLSAVYPQHRQGSTAIRTLLAFLETRLAD 292


>gi|157372088|ref|YP_001480077.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323852|gb|ABV42949.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 306

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 4/289 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F ++   GSF+ AAE   ++ S +S++I  LE  +G +L YR  R LTLTE G  
Sbjct: 9   NDLILFALIVDCGSFSKAAETAGITSSVVSKRIGRLEKSLGARLLYRTTRSLTLTENGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+R   E+  K +     + E S + +G +R++     G+ LL  ++ EF  L+P+++++
Sbjct: 69  LYRQAKEISAKTQEALNVISEHSDELTGIIRMSVPTISGELLLSESVAEFCALHPNLKVE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+  D+  +  D AIR    +  SSLI R ++        +P YL+   EP S  +
Sbjct: 129 MRLENRFADLVNEGIDLAIRTG-TLPDSSLIARPILNSRWVIVCSPSYLQQYSEPQSAGD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN +T+                 ++         L  N+  +I +  + G GIA++P
Sbjct: 188 LLEHNCLTYTYQESGTDNWLMKQPGSNKIYELQVSGNLSANNARAIRKAVIAGYGIAMVP 247

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V ++     +V ++         +Y  YP       K +     I 
Sbjct: 248 RCMVYEDLQEGAMVEVLSGHCGKVLGIYAVYPYTRNLPLKTRLLIEHII 296


>gi|145299170|ref|YP_001142011.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851942|gb|ABO90263.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 310

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R+F  VA   SFT +AEQL + ++++S  I  LE ++G +L +R  R + LT 
Sbjct: 1   MDQLDAMRMFMRVAELESFTRSAEQLGMPKATLSAAIRRLEEQLGARLLHRTTRRVQLTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   +E      +    + SG+LR+     + ++L+   L  FL  +PD
Sbjct: 61  DGQLCYARCQALLADMEEFNGLFR-PHGQLSGQLRVDMPSRMARHLVIPALPAFLATHPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ +D+  +  DC +R+   ++SSSL+ R L        A+  YL     P 
Sbjct: 120 LQLMLSSTDRRVDLVREGFDCVVRVGA-LESSSLVARPLGHYRQINCASATYLARHGIPQ 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H L+ +G +       F +L              L VN   + +   + G GI
Sbjct: 179 TLADLAGHRLVHYGAVPGDKEAGFEYLQADGSRAVLAMAGTLTVNDSETYLAAALAGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V+    +  LV ++     P   ++  Y    + + +++AF +++
Sbjct: 239 IQMPRVGVEALLASGELVMVLPQWQAPPLPIHALYAHRRQLSPRVQAFIHWL 290


>gi|78066828|ref|YP_369597.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967573|gb|ABB08953.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 307

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 7   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        V + ++  +  +    VK SG LRI+     G+  +   + EF + +PD
Sbjct: 67  EGSAFLEDCQRVINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSVGHPD 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 127 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPA 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ EL +HN +    L     +   W    D  +   R+   ++ +    + ++C+ G G
Sbjct: 186 TLAELARHNCLA---LAANANQQRGWAFQEDDKVVSIRVNGTMECSDGAVLHEWCLDGHG 242

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V D+     LV +++    P   ++  +P+      +++ F +++
Sbjct: 243 LAWRSWWEVGDDIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDYL 295


>gi|260580803|ref|ZP_05848629.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae RdAW]
 gi|260582693|ref|ZP_05850481.1| DNA topoisomerase I [Haemophilus influenzae NT127]
 gi|1139588|gb|AAC43726.1| ORF2 [Haemophilus influenzae]
 gi|260092620|gb|EEW76557.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae RdAW]
 gi|260094259|gb|EEW78159.1| DNA topoisomerase I [Haemophilus influenzae NT127]
 gi|1587741|prf||2207242B ORF 2
          Length = 305

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 139/293 (47%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     + + +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGMMYYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----AMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 236 IANLPKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|209694745|ref|YP_002262673.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
 gi|208008696|emb|CAQ78884.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
          Length = 300

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 132/289 (45%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V  +G  T AAEQL+L++S++S+++S LE ++GIKL  R  R  +LTE G 
Sbjct: 4   LESMHIFTKVVEAGGITKAAEQLNLAKSAVSKRLSELEQQLGIKLINRTTRTSSLTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  ++      +     + +G +++A  +  G   L   L +F   +P +++
Sbjct: 64  SYFIKCKLILEEVNDLNCHVSAIHQELNGTIKLAVPLTFGVMHLVPALDDFAKAHPKLKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  D AIR+   + SS+L  + +  IH    A+P YL     P +  
Sbjct: 124 DIDFSDRKVDLVEEGIDLAIRIGN-LTSSTLQAKAIAPIHHVLCASPAYLAEHGNPSTPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H L+ +       +E  +     ++ +  P  +    N+   +    V G GI  +
Sbjct: 183 ALKSHQLLRYRQQPLSGVELRD---NKNQAMTVPMETHCIANNGDFLKAMAVSGHGIIFM 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +IV +      L+ IM D    S   Y  YPE      K++   +F+
Sbjct: 240 PTFIVWEELAKGTLLPIMNDYHFNSVHAYALYPETRYLPQKVRKLIDFL 288


>gi|78066743|ref|YP_369512.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967488|gb|ABB08868.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 321

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 140/297 (47%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LH+S++++++ +  LE  + +KLF R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVEAGSFTKAAETLHMSRTTVTQLVQQLEARLRVKLFNRTTRKVVVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  +S  P G+LR+       + +L   L  F   YPD
Sbjct: 61  DGAAYYDRVVRLLADMDDAETSLSAASASPRGRLRVDVPSPFARLILIPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +D+  +  DC +R  +P    +L+ R++  + +  YA+P YL     P 
Sbjct: 121 IQLDMGVSDRVVDVIGENVDCVMRGGEP-TDRALVARRVGDLRLGVYASPAYLARAGMPT 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLG 238
              EL+   H ++ F  L  +  +   +  T D      R    L V+   + ++  + G
Sbjct: 180 HPDELEDTHHRIVGF--LWARTGKALPFAMTCDGEQVTVRGRYVLAVDDGNAYLEAGLAG 237

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  LPDY+    +    LV + E        +Y  +P     + KL+ F +++  
Sbjct: 238 LGILWLPDYMAGVHRARGELVPLFEQWQLEPMPMYVAFPPNRHVSAKLRVFVDWVAE 294


>gi|94499299|ref|ZP_01305837.1| transcriptional regulators, LysR family protein [Oceanobacter sp.
           RED65]
 gi|94428931|gb|EAT13903.1| transcriptional regulators, LysR family protein [Oceanobacter sp.
           RED65]
          Length = 293

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 147/301 (48%), Gaps = 14/301 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS +++ ++ F  VA +  F+ AA+QL  S S ISRQ++ LE  +G++L  R  R ++LT
Sbjct: 1   MS-NFEGIQEFVAVAEAQGFSAAAKQLDASTSHISRQVARLEERLGVQLLARTTRMVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G + +    E+   L+     + + S+K +G L+++      +  +   L +F   +P
Sbjct: 60  DAGERYYTQCRELIDGLQQADESVSDESIKLTGTLKVSAAGTFAEQFIAPCLMQFAKSHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I++  +++ ++   +  D AIR  + ++ S L+ R+L+  H+ A A+P YLK   EP
Sbjct: 120 ELSIEMDFNSRMVNFVEEGFDFAIRYGR-LKDSGLVARRLIQRHLMAAASPEYLKQFGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
               +L  H  +           + +WL + ++   + ++S   + N+   ++Q C  G 
Sbjct: 179 THPDDLKHHKCLL--------TNNDHWLFSENQQSFDVKVSGPWRSNNANVVLQACEHGM 230

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA +P    +    +  L  I+ D  +   T +  Y        + +   +++    +D
Sbjct: 231 GIAYMPVSSFEQSINSGRLKPILRDYWSHGITSWIVYQNRRFLPMRARLAIDYLLQHFKD 290

Query: 297 W 297
           W
Sbjct: 291 W 291


>gi|83719671|ref|YP_442520.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83653496|gb|ABC37559.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 327

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 136/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 28  MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 87

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LR++     G+  +   +  F   +PD
Sbjct: 88  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPD 147

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 148 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPE 206

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G
Sbjct: 207 TLDDLARHNCLA---LAANANQQRGWTFVDDGKVVSIRVSGTMECSDGAVLHEWCLEGHG 263

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 264 LAWRSWWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 316


>gi|145631392|ref|ZP_01787163.1| DNA topoisomerase I [Haemophilus influenzae R3021]
 gi|144983051|gb|EDJ90555.1| DNA topoisomerase I [Haemophilus influenzae R3021]
          Length = 305

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 140/293 (47%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q ++S +  S+ +S LE  + I+L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKIRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     + + +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGMMYYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKIDLLSESYDLALRIGY-MEDSSLVSRKIGTTTVHFVASPNYLEANGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----SMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +I+    +   L+ ++ +       ++  YP       K++AF  F+
Sbjct: 236 IANLPKFILGSAFEKGELIELLPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|91783107|ref|YP_558313.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687061|gb|ABE30261.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 303

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/294 (29%), Positives = 138/294 (46%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + VF  + RSGSF  A  QL +SQS +SR ++ LE  +GI+LF R  R + LT++G 
Sbjct: 9   LNGMGVFAAIVRSGSFAEAGRQLDMSQSGVSRSVARLEARLGIRLFDRTTRVVKLTDEGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +   + +   LE  +           G LR+       + +L  +L+ FL  YP I +
Sbjct: 69  RFYEQIAPLLAGLEEAEAMAAGDRATVRGHLRVNVDPFFSRLILGPHLEAFLDQYPAIHV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+  +   D+  D  D A+R  +P ++SSL+ RKL+   +   AAP YL+    P   +
Sbjct: 129 DLMTRDHLGDMVSDGFDLAVRFGEP-RNSSLVARKLLDTRILTVAAPAYLRRHGRPAQPR 187

Query: 185 ELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           EL+   H  I F  L P+    F W     R   + +    L +N   ++   C+ G GI
Sbjct: 188 ELESGSHVCIEF--LNPETGRPFVWEFHQKRKKIQIQTNGRLTLNDVGTMHSACLAGYGI 245

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A + +  V+    +  LV +  D     F +Y  YP       K +AF +F+  
Sbjct: 246 AQVMEIGVEAMIASGKLVELFPDWRDDRFPLYALYPSRHHLPAKTRAFIDFVAA 299


>gi|300311443|ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074228|gb|ADJ63627.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 324

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 130/295 (44%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V R+GSF  A  +L +  ++ISR++  LE  +G++L  R  R L +T  
Sbjct: 2   LDLNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +     +     +E     L ES  +P+G LR+A  +D   N     + EF+ LYP +
Sbjct: 62  GREFFERCAPGLEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++ +L++   D+  +  D A R    +  SSL+ RKLV  H+   A+P YL+    P S
Sbjct: 122 QLEFVLNDGRADLIAEGIDLAFR-GGVLPDSSLVARKLVQSHLALIASPRYLERQGTPQS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H  +         +     L     P        L VN+    ++    G GIA
Sbjct: 181 LTDLTAHACLATSQAPQHTVWK---LEGPHGPESVKVTPRLCVNTAQGQLRAARAGLGIA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP  +  ++     LV I+ D    +   Y  Y    +    + A   F   K 
Sbjct: 238 LLPTMLASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKL 292


>gi|254502719|ref|ZP_05114870.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438790|gb|EEE45469.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 311

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 10/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA  GS + A  ++ LS S+ S +++ LE   G +LF R  R   LTE G  L 
Sbjct: 1   MEFFIRVAELGSLSGAGREIGLSPSAASARLTNLEKTFGAQLFARTTRKTALTEAGRVLL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  H+L+  +  L+ +   P G LRI+     G+  +  +L EF  LYPD+QI++ 
Sbjct: 61  DHARSAIHELQQARQALEATQDSPQGALRISCNTFFGRKHILPHLVEFRSLYPDVQIEMD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D AIR   P+  SSL+ R+L        A+P YL     P + ++L+
Sbjct: 121 ISDRMVDVVQEGYDMAIR-GAPLADSSLLARRLGGNPRALCASPDYLARKGRPKTPEDLN 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ I+   +     +  +    V   + +P I     +S        + G G++L    
Sbjct: 180 NHDCISMASVPVWYFDGPD--GEVGFELKKPVIKG---DSGDLTYDAAIHGLGLSLKSLA 234

Query: 248 IVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK 293
            V +   +  LV +MED        ++  YP       K+  F +F+  K
Sbjct: 235 HVWEDLRDGRLVAVMEDYPVARVGAIWAVYPPTRFVPPKVSVFVDFLISK 284


>gi|226945638|ref|YP_002800711.1| LysR family regulatory protein [Azotobacter vinelandii DJ]
 gi|226720565|gb|ACO79736.1| Regulatory protein, LysR family [Azotobacter vinelandii DJ]
          Length = 309

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 144/296 (48%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +   VF  VA + SF  A   L +S S++ + ++ LE ++G++LF+R  R +TLT 
Sbjct: 1   MDSLNGFVVFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSVTLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+     +  +  ++E  ++EL +++  P G+LR++    L  +L+   L EF+  YP+
Sbjct: 61  EGTLFLERSRRILAEIEAAELELSQATAAPRGRLRVSLP--LVSSLVLPVLGEFMREYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++ +D+  +  D  +R  +P   S L  R+L T      A+P YL     P 
Sbjct: 119 IELDLDFTDRMVDVIEEGFDAVVRTGEP-TDSRLTARRLGTFRSVLVASPGYLDLRGTPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +       +E +        P  +   S +  N+  + + + + G GI
Sbjct: 178 VPADLLLHTCLHYRFPNSGKLETWALRQEPGAPELQLPTS-MICNNIETRVCFALQGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LPD+ +++   +  L  I+ D +  +   +  +P +   + K++A  +F+  + 
Sbjct: 237 AYLPDFAIREPLADGRLQPILADHVERAGVFHVLWPASKHPSPKVRALVDFLSARV 292


>gi|254691388|ref|ZP_05154642.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 6 str. 870]
 gi|256256573|ref|ZP_05462109.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 9 str. C68]
 gi|260757001|ref|ZP_05869349.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260882812|ref|ZP_05894426.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|297249930|ref|ZP_06933631.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196]
 gi|260677109|gb|EEX63930.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260872340|gb|EEX79409.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|297173799|gb|EFH33163.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196]
          Length = 306

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  V  +GS + AA  L LS + +S+++  LE  +G  L     R + LT
Sbjct: 1   MMSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTSLLQCTTRQIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 61  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P
Sbjct: 121 DLTVNMQLSDEMVDIVGDGYDLAIRVGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI       LQ NS   + +  + G G
Sbjct: 180 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPTGPLQTNSSEIVREAVLAGLG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 234 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|153010934|ref|YP_001372148.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562822|gb|ABS16319.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 297

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF     SGS + AA +L +S     +QI  LE  +G++L  R  R  +LT+
Sbjct: 1   MDRLTGMRVFVKAVESGSISSAAHELEMSSQLAGKQIRALELGLGVRLLTRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +  +++  +  + E+  +P G+LR++  +  G + L   L E+L  +P+
Sbjct: 61  SGQVFYERAKNILAEMDLAEALMAETRSEPRGRLRVSAPVTFGSHALAPELSEYLRRHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L N+++D+  +  D   R    +  SSLI ++L    +   AAP Y+ +     
Sbjct: 121 VSVDLNLTNRNVDLVEEGFDVIFRAGD-LPDSSLIAKRLAPYRLILCAAPAYMDSASSLK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L +H  + F     +    F      +  +          NS  ++    + G GI
Sbjct: 180 TPQDLVEHECLIFTHSSLRTHWSF---IGPEGEVTISITGRFCANSGEALRAAALSGMGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              P  +V D   +  L+R++ +   PS  ++  Y    + T KL++F +F   K  D K
Sbjct: 237 LFQPYELVADEISSGKLIRLLPEYEPPSRALHALYASDRQMTPKLRSFLDFATEKFSDGK 296


>gi|254247854|ref|ZP_04941175.1| hypothetical protein BCPG_02666 [Burkholderia cenocepacia PC184]
 gi|124872630|gb|EAY64346.1| hypothetical protein BCPG_02666 [Burkholderia cenocepacia PC184]
          Length = 301

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 137/292 (46%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LRI+     G+  +   + EF + +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSVGHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ EL +HN +    L     +   W    D  +   R+   ++ +    + ++C+ G G
Sbjct: 180 TLAELARHNCLA---LAANANQQRGWSFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +A    + V ++     LV +++    P   ++  +P+      +++ F ++
Sbjct: 237 LAWRSWWEVGEDIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDY 288


>gi|330504220|ref|YP_004381089.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918506|gb|AEB59337.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 308

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 137/287 (47%), Gaps = 11/287 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA  G F+ AAE+L LS S +SRQ++ LE  +  +LFYR  R + LTE G 
Sbjct: 4   WEGLDEFVAVAECGQFSAAAERLGLSTSQVSRQVARLEDRLQSRLFYRSTRRVALTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +    E     + +   +P G LR+   +  G+  +   + +F+  +P +++
Sbjct: 64  LFLQHCQRLQDAREEALRAVGDLGAEPKGLLRMTCAVAYGERFIVPLVNDFMARHPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L N+ +D+  +  D AIRL + +Q S L+  +L    M+  AAP YL+    P S+ 
Sbjct: 124 EIELSNRQLDLLHEGLDLAIRLGR-LQDSRLMAARLAPREMYLCAAPEYLQRYGRPHSLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +           D    A   R          + NS  +++   + G G+  L
Sbjct: 183 ELARHNCLI-------GSSDHWSFAENSRETQVRVQGNWRCNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           PDY V +   +  L+ ++E    P+  V+  YP+    + K++   +
Sbjct: 236 PDYYVLEYLRSGRLISLLEQHRPPNTAVWALYPQQRHLSPKIRQLID 282


>gi|300703988|ref|YP_003745590.1| transcriptional regulator [Ralstonia solanacearum CFBP2957]
 gi|299071651|emb|CBJ42975.1| putative transcription regulator protein, HTH-type [Ralstonia
           solanacearum CFBP2957]
          Length = 306

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 133/300 (44%), Gaps = 5/300 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT
Sbjct: 1   MSNPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G      + ++   +E  Q   + S     G+LR+   + + + ++   L  FL  +P
Sbjct: 61  QDGQAFFERSQDLLADMEELQTMFRHSPQALRGRLRVDMPVGVARKIVIPALPAFLDAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L   ++ +D+  +  DC +R+   +  SSLI R L  +     A+P YL     P
Sbjct: 121 QLEIELSSTDRRVDLVREGFDCVLRIGA-LSDSSLIARPLGQLPQMNCASPAYLARYGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +LD+H L+ +   +   +  + ++    R    P    L V++  S    C  G G
Sbjct: 180 RSLDDLDQHRLVHYVQTLGTKVPGWEYVVD-GRAAYRPMQGVLTVSTAESYEAACQAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +   P   +        LV ++         V   YP       +++ F N++  +   +
Sbjct: 239 LIQAPMSGLAPQVARGELVDVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMNWVAEQLAPY 298


>gi|115352133|ref|YP_773972.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|170703341|ref|ZP_02894129.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|115282121|gb|ABI87638.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
 gi|170131754|gb|EDT00294.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 301

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 136/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ EL +HN +    L     +   W    D  +   R+   ++ +    + ++C+ G G
Sbjct: 180 TLAELARHNCLA---LAANANQQRGWAFQEDDKVVSIRVNGTMECSDGAVLHEWCLAGYG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +++
Sbjct: 237 LAWRSWWEVGGDIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDYL 289


>gi|296115322|ref|ZP_06833961.1| probable transcriptional regulator protein, LysR family
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295978145|gb|EFG84884.1| probable transcriptional regulator protein, LysR family
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 299

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 133/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  SG+FT AA+ L +  ++++  I  LE  +  KL  R  R + +T 
Sbjct: 1   MDQLTAMRAFVRVVESGNFTRAAKALGMPNATMTTHIQALEAHLKTKLLNRSTRRVVVTN 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++     L+ S V P+G++R+  +  +   ++   L +F   YPD
Sbjct: 61  DGAIYYERAKLIIADIDEIDASLKNSHVLPNGRVRVEMSGGIADLVVLPALHDFYNKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L + ++ ID   +  DCA+R   P   SSLI R++        A+P YL+    P 
Sbjct: 121 IHIDLGVSDRPIDYIAENVDCALRSGAP-TDSSLIARRVAEFEFVTCASPFYLERHGIPK 179

Query: 182 SIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L+  H +I +            +     +   +P  S L VN   +  Q   +G G
Sbjct: 180 HPKDLETGHQMIRYFRPQSGRALAVEFHRENKKICVDPP-SVLSVNDARTFTQGIRMGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +P  +V+ +     LV ++ +   P  T+Y  +P     + +++ F +++ 
Sbjct: 239 VGCVPQLLVQSDLRQGRLVELLPEWEQPPITIYLVFPSNRHVSNRVRVFSDWLI 292


>gi|319795206|ref|YP_004156846.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597669|gb|ADU38735.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 300

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 136/287 (47%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + +F  V  +GSF+ AA + + +Q ++++QI+  ET + ++L  R+ RG++LTE G+  
Sbjct: 6   AMEMFVRVVETGSFSKAAREFNTTQPTVTKQIAATETRLKVRLLNRNTRGVSLTEPGALY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +    E     +Q    +  G LR+ T++  G+ ++     E++  +P +Q+ L
Sbjct: 66  YEKCKTIVRDAEEADSIVQLRQNQAQGLLRVGTSVAFGRRVVVPLALEYMRRHPQVQLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +D+     D AIR+ K +  SSL  R L        AAP YLK    P   Q+L
Sbjct: 126 SFEDRYVDLIAQGIDVAIRMGK-LADSSLGARYLGANPWVMVAAPGYLKKHGTPKRAQDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + +  ++    E +        P+  P     + N+  +++     G GIAL+P 
Sbjct: 185 GAHVALIYSSVVGD--EFWRMHTPKGEPVTVPVSGRFRSNNLSAVLAAARDGLGIALMPR 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+  ++     +V ++ D   P   ++  +P      GK+  F  F+
Sbjct: 243 YVASESMAAGKVVAVLGDHALPEQEIHAVFPSPKLVPGKVSGFVAFL 289


>gi|264678250|ref|YP_003278157.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262208763|gb|ACY32861.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 308

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 134/295 (45%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  V  +G+FT AA+ L + ++S+++ +  LE  + +KL  R  R +T+T 
Sbjct: 1   MDQIQAMRIFARVVEAGTFTRAADSLQMPKASVTKNVQALEERLRVKLLNRTTRRVTVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +    +  +  + ++   P G+LR+     + + L+  +L EF   YP+
Sbjct: 61  DGAAYYDRAVRLLADFDDLEASVSQARTTPRGRLRVDVGTTVARLLIIPHLSEFQSRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ +D+  D  DC IR    +   SL+ R++  +     AAP YL+    P 
Sbjct: 121 IQIDLGVSDRTVDLISDNVDCVIR-GGELADQSLVARRIGNLEFITVAAPEYLQRHGVPQ 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L   H  + +   +                I     + L +N   + +   + G G
Sbjct: 180 HPRDLESGHRNVIYFSPVSARRYPLE-FHKGGEVIEIASPAHLGINEGNAYISAILAGQG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L  + +    ++  L R++ED   P   +Y  YP     + K++AF +++  
Sbjct: 239 IGQLSRFQIHKYLESGQLQRVLEDWKHPLLPIYVVYPPNSHLSAKVRAFVDWVVE 293


>gi|197284690|ref|YP_002150562.1| LysR family transcriptional regulator [Proteus mirabilis HI4320]
 gi|227357685|ref|ZP_03842034.1| LysR-family transcriptional regulator [Proteus mirabilis ATCC
           29906]
 gi|194682177|emb|CAR41827.1| LysR-family transcriptional regulator [Proteus mirabilis HI4320]
 gi|227162014|gb|EEI47028.1| LysR-family transcriptional regulator [Proteus mirabilis ATCC
           29906]
          Length = 298

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 138/292 (47%), Gaps = 9/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++++VF  V  SGSFT AAE+L L+ S++SR +  LE+++G+ L  R  R L+LT
Sbjct: 1   MKATSEEVQVFIAVVESGSFTRAAEKLALANSAVSRTVKKLESKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   ++  + EL  +   P G LRI     +  +LL   +K+F   YP
Sbjct: 61  EEGEHYFHRMQVILQDMKLAEDELINTQKTPQGLLRIDAATPVVLHLLVPFIKQFQQKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + L+     I++     D AIR+   +  SSL  + L+  +    A P YL    +P
Sbjct: 121 QITLSLVSSETFINLIERKVDIAIRVGN-LTDSSLRAKPLLNSYRKIVATPDYLARYGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  +TF +  P  +  +       + +  P    +  NS  +I Q C+ G+G
Sbjct: 180 KIAEDLLDHTCLTFTE--PVSLNTWPIERENGQLLEAPM--GISSNSGETIRQLCLEGNG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRN 288
           IA L D++V    +N   + +  D + P +      Y      + +++ F +
Sbjct: 236 IACLSDFMVVNDIENGRFIELFPDKLRPIAMPFNAVYYSEKVVSQRIRVFID 287


>gi|116694912|ref|YP_729123.1| transcriptional regulator [Ralstonia eutropha H16]
 gi|113529411|emb|CAJ95758.1| transcriptional regulator [Ralstonia eutropha H16]
          Length = 307

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 135/307 (43%), Gaps = 13/307 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W ++  F  VA  GS T AAEQL +S ++ +R ++ LE  +G +L  R  R L LT+
Sbjct: 1   MDKWTQIEFFVQVAELGSLTKAAEQLGMSSAAATRCLNALEERLGARLVERTTRRLWLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + HR  + +  ++   +  + E+++ P+G LR+  +       L   L  F   YP+
Sbjct: 61  AGREYHRRCAAMLAEMAEAEAAINEATLNPTGVLRVTASASFAMIHLAPALPAFRACYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +Q+I  N+  D      D AIR R+    S +  RKL        A+P YL     P 
Sbjct: 121 LAVQIIAANRYPDFIEAGIDVAIRTREHEGDSGITVRKLAETRRVLAASPGYLAERGMPD 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L +H ++ +       +  F      D     P  S L  N    I    + G GI
Sbjct: 181 APDALRQHQMLIYNLANDPYLLHFR---RGDETATVPVTSVLDSNEGQVIRAAALAGHGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----- 293
            + P YI+ ++     LV ++ D   P  T+   Y        +++ F +F+F +     
Sbjct: 238 LVQPLYIIYEDIVAGRLVPVLPDWQLPKLTINVAYQCRRHQPARIRVFIDFLFERFERLG 297

Query: 294 -ARDWKF 299
            AR W+ 
Sbjct: 298 LARKWEM 304


>gi|167619553|ref|ZP_02388184.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257138727|ref|ZP_05586989.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 300

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 136/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LR++     G+  +   +  F   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G
Sbjct: 180 TLDDLARHNCLA---LAANANQQRGWTFVDDGKVVSIRVSGTMECSDGAVLHEWCLEGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|302134270|ref|ZP_07260260.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|331014475|gb|EGH94531.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 301

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 132/295 (44%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FLAMRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  ++   EV   +  ++   +++  +P+G LRI   +  G  LL   L  F   +P
Sbjct: 60  EFGTAYYQRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L+L N+ +D+  +  D AIRL    QSS LI R L    +   AAP YL     P
Sbjct: 120 DVKLDLVLTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAAPDYLARHSAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
              ++L  HN + F                +  P GE  +     +  N+   + Q    
Sbjct: 180 TRPEDLRAHNCLAFAYPAGDEWRTAGTQWRMTGPEGEVLVDVDGSMVANTSAGLYQAARA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     LV ++ D   P   +   Y +      KL++F  F
Sbjct: 240 GMGVVMLPDALVQRDLQEGRLVALLPDYRLPRRPMNLLYVQDRYRLPKLRSFVEF 294


>gi|298487066|ref|ZP_07005117.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158419|gb|EFH99488.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 301

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    EV   +  ++   +++   PSG LRI   +  G  +L   L  F L +P
Sbjct: 60  EFGTAYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+L N+ +D+  +  D AIRL    QSS LI R +    +   AAP YL     P
Sbjct: 120 EVKLDLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARPMQDYTLTICAAPSYLARHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
               +L  HN + F                +  P GE  +     +  N+   + Q    
Sbjct: 180 AHPGDLGAHNCLAFSYPAGDEWRTAGTQWRMTGPEGEVLVDVDGSMVANTSAGLYQAACA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     LV ++     P   +   Y +      K+++F  +
Sbjct: 240 GMGVVMLPDALVQRDLQEGRLVALLPGYHLPRRPMNLLYVQDRYRLPKVRSFVEY 294


>gi|313108025|ref|ZP_07794191.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310880693|gb|EFQ39287.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 291

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 148/293 (50%), Gaps = 8/293 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA +GSFT AA+ L + ++++S  +  LE ++G +L +R  R + LT  GS + 
Sbjct: 1   MRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTHDGSVVL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +    +   + SG+L++     + + L+   L EF   +PDI+++L 
Sbjct: 61  ERCRHLLEDMEELESLFHDG-SRASGRLKVDVPSRVARLLIAPALPEFFRQHPDIELELG 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+ + + +SSL+ R+L  + +   A+P YL+   EP +  +LD
Sbjct: 120 SSDRSVDLVQEGVDCVLRVGQ-LGNSSLVARRLGEMQLINCASPAYLEEHGEPRTPADLD 178

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + +       +  + +     R +     S + VN+  S +  C+ G G+  +P Y
Sbjct: 179 RHWAVNYASPSSGRVLPWEYRED-GRTLTRALRSRVTVNNAESYIACCLSGLGLIQIPAY 237

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
            V+++     L  ++      +   Y  YP     + +++AF +++   L+AR
Sbjct: 238 DVREHLQRGELREVLPQWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLLRAR 290


>gi|299065182|emb|CBJ36348.1| putative transcription regulator protein, LysR family (aaeR)
           [Ralstonia solanacearum CMR15]
          Length = 299

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 126/296 (42%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +GSFT AA QL +S   + + +  LET +G +L  R  R  +LT+
Sbjct: 1   MDKLRSMETFVAVVDAGSFTEAATQLEISAVMVGKYVRELETRLGARLLQRSTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  ++   +  ++    +PSG LR++     G  ++      F   +P 
Sbjct: 61  AGRVFYEDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+ +D++ +  D A+R+   +  + L+ + L    M   A+P YL     P 
Sbjct: 121 VRVELDLSNRMVDLADEGFDLAVRIGA-LGDADLVAKPLCAYRMVICASPDYLARHGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  ++    +     +   L+  D             N    +    + G+G+
Sbjct: 180 TPADLPAHRCLSH---MVWNSRNAWQLSGWDGTTTWRDNPAFSCNDGHGLRMAAIAGAGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L P+ +V ++     LVR+++        V+  Y +  +   KL AF   +  + 
Sbjct: 237 LLQPEVLVAEDLASGRLVRVLQTYAPQPRPVHLVYRQDRRPLPKLTAFTAHLLEQV 292


>gi|149908293|ref|ZP_01896957.1| putative transcriptional regulator [Moritella sp. PE36]
 gi|149808835|gb|EDM68768.1| putative transcriptional regulator [Moritella sp. PE36]
          Length = 308

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 137/296 (46%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + L++F  +A  GSF   A Q   S S+IS+ I+ LE ++G++L +R  R L LTE
Sbjct: 1   MDKINLLQLFVSLAEQGSFVAVANQSGQSPSTISKAITRLEKDLGVRLLHRTTRQLQLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   EV   L+ T+ +L ++   P+G L+I   +  GQ  +   L EF   YPD
Sbjct: 61  AGESYLQTAREVLSLLQNTESKLTQNISTPTGTLKINLPMSFGQLYVVPLLPEFCQQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   +   DI     D AIR  K +  S LI R++  + M  +A+P +L     P 
Sbjct: 121 IKLELSFSDDYTDIVESGIDIAIRSGK-LNDSRLIARRICPMDMGIFASPDHLAKFGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  E ++HN I +       +              +P+   L V+   ++ Q   LG+G+
Sbjct: 180 TPAEFEQHNWIKYRFKQSGRILTIMLPQAEQIVELDPKSYVL-VDDGNALAQLTSLGTGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A +P ++V+D      L  I      P   VY  Y        K++ F  +I  K 
Sbjct: 239 AFMPHFLVRDLVQEGKLTLISSPWRNPEQAVYLYYLSRDYLPAKVRLFIEYIVQKL 294


>gi|91790390|ref|YP_551342.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699615|gb|ABE46444.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 302

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 133/292 (45%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  V   GSF+ AA  + + Q S ++ ++ LE ++G +L +R   G+T TE
Sbjct: 1   MDRIQAIQLFIRVVDLGSFSKAAADVGIGQPSATKLVAQLEKQLGSRLLHRSTHGVTPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     + H +E  +        +  G LRI+T++  G+ +L   +  F+ L+P 
Sbjct: 61  IGALYYEKCKLIAHHIEEAETVAALLQSQVQGGLRISTSVAFGRRVLVPLVMRFMKLHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L  +++ +D+     D AIR+  P+  S+L  R L        A+P YL+   EP 
Sbjct: 121 LQIELNFEDRYVDLVEQGIDVAIRMG-PLADSTLGARYLGVNPWVLVASPEYLERRGEPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +  +       F     +  P+  P    L+ N+  +++     G G+
Sbjct: 180 VPADLAAHEALIYSTVQGDARWHFTGTDGLTLPV--PVKGPLRSNNLSALLAAARGGMGV 237

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP Y+   +     L  ++ D   P   ++  YP       K+  F  ++
Sbjct: 238 AALPRYVAHKSIRSGVLRPLLTDWTLPQQEIHAVYPSPQLVPTKVSGFVAWL 289


>gi|312964668|ref|ZP_07778919.1| putative transcriptional regulator [Escherichia coli 2362-75]
 gi|331681683|ref|ZP_08382316.1| LysR-family transcriptional regulator [Escherichia coli H299]
 gi|312290689|gb|EFR18567.1| putative transcriptional regulator [Escherichia coli 2362-75]
 gi|323191416|gb|EFZ76678.1| putative transcriptional regulator [Escherichia coli RN587/1]
 gi|331080885|gb|EGI52050.1| LysR-family transcriptional regulator [Escherichia coli H299]
          Length = 297

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  I  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 293


>gi|270262473|ref|ZP_06190744.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043157|gb|EFA16250.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 310

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 128/293 (43%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  VA  GS + AA  L L+Q ++S+QI+GLE ++G +L +R  R ++LT+
Sbjct: 1   MDKLSAMKTFVRVAELGSLSAAARDLGLTQPAVSQQIAGLEQQLGTQLLFRSTRAVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   ++  +  L   + +  G LRI      GQ  L      F   +P+
Sbjct: 61  AGGGYYRQIKPILAAVDEAEEALHGLNRRLQGNLRIHAPTGFGQQHLTPLAIAFQQRHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L+LD++  D+  +  D AIR  + + +   + R+L  +     A+P YL     P 
Sbjct: 121 LNIELLLDDRRADVIGEGIDVAIRFGE-LSAPGTVARRLGELQRILVASPAYLAAHGMPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L  H  I +  L              +     P     + N+  S++     G GI
Sbjct: 180 TPAALTAHAHIRYSGLSDGDTLTLIGPQGAEMVNVRP---VFRANNTFSLLAAIESGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                 ++        LV+++     P   ++  YP A    GK++A+ +++ 
Sbjct: 237 GGAQRPLIGRQLAAGTLVQVLPAWHYPPMALHAVYPAARFIPGKVRAWVDYLL 289


>gi|239815514|ref|YP_002944424.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802091|gb|ACS19158.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 314

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L+VF  VA +GSFT AA++L L +++IS  +  LE ++G +L +R  R + LT 
Sbjct: 1   MDRIDLLKVFLRVAETGSFTRAADRLALPRATISTAVQQLEAKLGSRLLHRTTRRVGLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +   +E  + +   S  + SG+L++     + + L+   L +F   YP 
Sbjct: 61  DGEVLLERARTLVADMEDIEQQFLPSRSQVSGRLKVDVPSRIARRLIAPALPDFFERYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+ ++  DCA+R+  P+ SSSL+ R L    +   A+P YL     P 
Sbjct: 121 IELELGSSDRAVDLVLEGVDCALRVG-PLASSSLVARPLGHFTLINCASPAYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  + +          + W    +      R S +  N+  + +   + G G+
Sbjct: 180 TPADLPEHIAVNYASPTSGRAAPWEWQRDGETATLRMR-SQVSANNAETYIACALAGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V+++     L  ++ +       V+  YP     + +++AF  ++
Sbjct: 239 IQIPAYDVREHLAAGELAEVLPEARAQPLPVHLVYPHRRNLSRRMQAFAGWL 290


>gi|254254201|ref|ZP_04947518.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124898846|gb|EAY70689.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 303

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 132/299 (44%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT 
Sbjct: 1   MDHLHAMRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVALTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +   + +   L+  +    ++   P G +R+        N +   L +F   YPD
Sbjct: 61  EGATYYERCTRLLADLDDAETLFDDAGASPRGVVRVDLPERFALNQVIPALPDFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++ +D+  D  DCA+R    +  +SL+ R++  +     A+P YL     P 
Sbjct: 121 LRVAISTTDRFVDLVADGIDCAVRAG-TLSDTSLVARRIGELAQVNCASPAYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S  EL  H  I +         D+ +       +   ++ S + VNS  + +  CV G G
Sbjct: 180 SPDELPDHVAIGYVSSRTSRELDWEYTDMDTGELHTVKMRSIVSVNSSHAYLACCVAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   P   +     + +LV ++ +   P   V   YP       +++ F +++     D
Sbjct: 240 LIQAPREGLAPLLADGSLVEVLPEWHAPPLPVSVVYPYGRHLAPRVRIFVDWLAQTLGD 298


>gi|269960324|ref|ZP_06174698.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834935|gb|EEZ89020.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 316

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 142/301 (47%), Gaps = 12/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  V   GSF  AAE L+LS+++IS+ I+ LE+ +   L  R  R L +T+
Sbjct: 1   MDKIRALTVFRRVVELGSFVAAAEDLNLSKAAISKNINELESYLKSPLINRTTRNLHITD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   +V   L      + ESS    G L+I+  + LG   L   + EF+ L+P+
Sbjct: 61  NGQLYYQQVCQVLDALNNADRSVIESSHTLKGTLKISMPMSLGLIELNPIICEFMKLHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++++ ++ ID+     D AIR    + +SSL  RKL+ I     A+P YL+  +   
Sbjct: 121 LSIEVVMSDEHIDLIEQGVDIAIRGGGELGNSSLRSRKLLDIRRVLCASPQYLEESQPFK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVLGS 239
           S +++  H                 W       + E     S   VNS L++ Q    G 
Sbjct: 181 SPRDVINH----RLLSYSLSSTSRRWTFQNGSEVLEVDLPASVYTVNSGLALTQAACAGH 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KA 294
           G+ALLPD+ V+    +  LV I  +       +Y  YP   + + KL+AF +++    +A
Sbjct: 237 GVALLPDFFVEPQLASGELVEITPEWQMEKHALYIVYPYHKEQSQKLRAFIDYVVESFQA 296

Query: 295 R 295
           R
Sbjct: 297 R 297


>gi|330831408|ref|YP_004394360.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328806544|gb|AEB51743.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 300

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +   +   +   GSFT AA +L ++++ +SR+I+ LE  +G++L YR  R LTLTE+
Sbjct: 1   MDLNAALILVRIVDKGSFTGAARELGMTKAMVSRRIAELEQRLGVRLLYRSTRQLTLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K +   S+    L   ++ L  S  + +G L++A  I+ GQ ++   + +FL  YP +
Sbjct: 61  GEKYYLHCSKAVDALTEAELMLSASQQEVTGTLKLAVPIETGQLVVGRLVAKFLQAYPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L L N+ +D   +  D  +R+   +  S+L  R+L +      A+P YL        
Sbjct: 121 QVELELTNRVVDPISEGLDALVRIGD-MSDSNLAARRLWSTGRLLCASPDYLARSPVIER 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H  +T           F       R +     S  +VN+     +    G G+A
Sbjct: 180 PEDLANHERVTVSSGFLASHWCFEL---DGREVLVDPPSRFRVNNITCAREAAKAGLGLA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LP  + +D   +  LV ++ +   P   +Y  +PE      KL+AF +F+ 
Sbjct: 237 SLPAMLCQDELASGELVILLPEWQQPRVPIYLLFPERQLMPRKLRAFIDFMI 288


>gi|170734020|ref|YP_001765967.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817262|gb|ACA91845.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 324

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++       Q  + KPSG LR+     LG+ ++  +L  F   YPD
Sbjct: 61  EGAAYYEHCMKIIAEIAEADASFQAGNRKPSGVLRVHMPSSLGRRVVLPSLSIFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP 
Sbjct: 121 ITLELGLSDRYVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLKRVTCASPDYLARHGEPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I +L +H+ + F            W+  +D    E R+   + VN   + +   + G G
Sbjct: 180 EIADLVEHHAVNFRS--SHGARAIPWVFMIDGKPFEVRMNGSVTVNDSDAYVTCGLEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   + +LV ++ D       +   YP     + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGSLVEVLPDSNPKPKPISIVYPHNRHLSQKVRVFADWIAE 292


>gi|26246310|ref|NP_752349.1| putative transcriptional regulator YcjZ [Escherichia coli CFT073]
 gi|26106708|gb|AAN78893.1|AE016756_76 Hypothetical transcriptional regulator ycjZ [Escherichia coli
           CFT073]
          Length = 322

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 30  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 89

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 90  ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 149

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 150 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 209

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 210 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 267

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V+   ++  L++++++        Y  YP   ++        + +
Sbjct: 268 CVPEDMVQEYIESGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 318


>gi|253990736|ref|YP_003042092.1| transcriptional regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782186|emb|CAQ85350.1| Transcriptional regulator [Photorhabdus asymbiotica]
          Length = 301

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 141/293 (48%), Gaps = 6/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V   GSF  AA+ L LS++++S+ I+ LE  +   L  R  R + +T 
Sbjct: 4   MDKLRAISVFRRVVELGSFKAAAQDLGLSKAAVSKNINQLEEYLKSPLINRTTRNMHITA 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +  +LE   + + E+S   +G ++++  + +G   L   + +F+  +P 
Sbjct: 64  NGRNYYHQVCNILDELENADLSVMETSHTLTGSIKVSIPMSMGLKALNPLICQFMHTHPS 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++++ +K ID+     D AIR    +  SSL  RKL+ +     A+P Y++   + L
Sbjct: 124 ISVEVVMIDKYIDLIEHGIDVAIRGGGELSDSSLRSRKLIKVPRVLCASPAYIEASEKIL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L  HN + +   +      + +    D  + + +     VN+ L++ Q  + G G+
Sbjct: 184 IPENLTSHNCLVYS--LSSSPRRWIFHNQNDVKVVDLKPGTYVVNNGLALKQAALSGHGV 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LLP+ +V D   +  LVR++ +       +Y   P   +++ K +AF +F+ 
Sbjct: 242 ILLPELLVTDELLSGKLVRLLPEWEADMQALYAIQPFHKEHSNKTRAFIDFLI 294


>gi|91789286|ref|YP_550238.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91698511|gb|ABE45340.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 309

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 137/296 (46%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F  V  +G+FT AA+ + + + +I+R I  LE E+  KL  R  R +T+T 
Sbjct: 1   MDKFSAMQAFVRVVEAGTFTKAADSMAMPKPTITRLIQTLEKELDTKLLNRTTRKVTVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  ++E  +  +  +   P G+L++     LG  ++   L +F   YPD
Sbjct: 61  DGAAYYERAGRLLSEMEELEASMSRAKASPRGRLKVDIPASLGIAVIIPALPDFYARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L + ++ +DI  +  DC +R    +   SL+ R++   ++ + A+P YLK    P 
Sbjct: 121 IQLDLGVSDRPVDIIAENVDCVVR-GGELIDQSLVARRIGEFYLMSCASPAYLKRHGTPQ 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
              EL+  H +I +    P+  + +++    D    E   +  L VN   + +   + G 
Sbjct: 180 HPAELEDSHRMIRYAS--PRNGKLYSFEYYKDGETVEVGGNYLLSVNDSRAGVVAALAGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+     + V+D      L  +     T S  ++  YP     + K++ F +++  
Sbjct: 238 GVLHTATFQVQDYISTGALEPLFNGWCTESIPLHVVYPPNRHLSNKVRVFVDWVAE 293


>gi|300977336|ref|ZP_07173827.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|300409861|gb|EFJ93399.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
          Length = 315

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 23  NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 82

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 83  ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 142

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 143 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 202

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 203 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 260

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V+   ++  L++++++        Y  YP   ++        + +
Sbjct: 261 CVPEDMVQEYIESGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 311


>gi|325121474|gb|ADY80997.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 306

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 140/294 (47%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + L  F ++ + GS    A +L+L+  ++SR+++ LE  +G++L  R  R ++LT
Sbjct: 1   MNADTE-LAFFCLLVKQGSLVATARELNLTPPAVSRRLTQLEERLGVRLLNRTTRRISLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G         +  +++  +  +  S   P G LR+   +  G++ +   +  F  +YP
Sbjct: 60  SEGEVYFENAVRILKEIDEMERLVSSSRAAPKGVLRVNAPLGFGRSYIAPAISTFAKIYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ +QL L ++ I++  +  D +IR  + I  S LI +KL        A+P YLK   +P
Sbjct: 120 DVDVQLHLTDRPINLPDEAIDVSIRFGE-IPDSRLIAKKLAANRRLLCASPSYLKTAGQP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           L+  +L +H  I             NW  +  + +   ++   L  N     + + + G 
Sbjct: 179 LTPHDLTQHQCIVIRQNDSAYG---NWRLSHGKQVETVKVHGQLSTNDGAVALNWALEGY 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  ++ V     +  LV+++ED  TP   VY  Y E L  + K+  F + +
Sbjct: 236 GILMRAEWDVAKYLRSGRLVQVLEDYETPPADVYAVYLERLNLSPKVAHFLDHL 289


>gi|254712036|ref|ZP_05173847.1| LysR family transcriptional regulator [Brucella ceti M644/93/1]
 gi|254715105|ref|ZP_05176916.1| LysR family transcriptional regulator [Brucella ceti M13/05/1]
 gi|261216813|ref|ZP_05931094.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261319680|ref|ZP_05958877.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|260921902|gb|EEX88470.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292370|gb|EEX95866.1| transcriptional regulator [Brucella ceti M644/93/1]
          Length = 306

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 126/294 (42%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  V  +GS + AA  L LS + +S+++  LE  +G +L  R  R + LT
Sbjct: 1   MMSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +   +E  +  +   S    G L+I+     G+  +   L  F+    
Sbjct: 61  EAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHITPYLVPFMRANA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + L ++ +DI  D  D AIR+ + +  S+L+ R+L  +     AAP YLK    P
Sbjct: 121 DLTVNMQLSDEMVDIVGDGYDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H  +   +  P  +E          PI       LQ  S   + +  + G G
Sbjct: 180 QTIEDLQDHICLAPHNNDPWRLE------GPKGPIVIRPTGPLQTKSSEIVREAVLAGLG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V        LV+++ D        ++  YP       K++ F +++
Sbjct: 234 IAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 287


>gi|237807329|ref|YP_002891769.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237499590|gb|ACQ92183.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 297

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + +F  +A  GSFT  AEQ+ L++S ++RQI+ LE  +G+KL  R+ R L+LT  GS
Sbjct: 4   LDAMHLFVRIAELGSFTAVAEQMDLARSVVTRQIAALEEHLGVKLMVRNTRRLSLTSAGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   +E  +  + E  + P G +RI   +  G   L   L +F  LYPDI +
Sbjct: 64  AYLEKCRVILDLVEAAEASVMEERLTPRGNIRIGLPLSFGLKTLSPLLLKFSGLYPDIDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D+  +++  +  D AIR+   +    ++ RKL T  + A A+P YLK   +P    
Sbjct: 124 EMDFDDHQMNLIEEGMDIAIRIAGQLAPGDIV-RKLGTCKLLAVASPDYLKQHGKPQHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  + +           +W   VD       I + ++ N+  ++ +    G G+ L
Sbjct: 183 ELINHACLGYTLTAGGS----SWTFMVDGRHETFYIKTHIKANNGDALTEAAANGLGLTL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            PD+IV D   +  +  I+++       +Y   P       +++   +F+
Sbjct: 239 QPDFIVNDYLQSGRVETILDEFTPAELGIYAILPSNRYVPHRVRVLLDFL 288


>gi|221067348|ref|ZP_03543453.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220712371|gb|EED67739.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 308

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  V  +G+FT AA+ L + ++S+++ +  LE  + +KL  R  R +T+T 
Sbjct: 1   MDQIQAMRIFARVVEAGTFTRAADSLQMPKASVTKNVQALEERLRVKLLNRTTRRVTVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +    +  +  + ++   P G+LR+     + + L+  +L EF   YP+
Sbjct: 61  DGAAYYDRAVRLLADFDDLEASVSQARTTPRGRLRVDVGTTVARLLIIPHLSEFQSRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ +D+  D  DC IR    +   SL+ R++  +     AAP YL+    P 
Sbjct: 121 IQIDLGVSDRTVDLISDNVDCVIR-GGELSDQSLVARRIGNLEFITVAAPDYLQRHGVPR 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L   H  + +   +                I     + L +N   + +   + G G
Sbjct: 180 HPRDLESGHRNVIYFSPVSARRYPLE-FHKGGEVIEIASPAHLGINEGNAYISAILAGQG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L  + +    +N  L R++ED   P   +Y  YP     + K++AF +++  
Sbjct: 239 IGQLSRFQIHKYLENGQLQRVLEDWKHPLLPIYVVYPPNSHLSAKVRAFVDWVVE 293


>gi|330963660|gb|EGH63920.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 301

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 132/295 (44%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FLAMRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  ++   EV   +  ++   +++  +P+G LRI   +  G  LL   L  F   +P
Sbjct: 60  EFGTAYYQRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L+L N+ +D+  +  D AIRL    QSS LI R L    +   AAP YL     P
Sbjct: 120 DVKLDLVLTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAAPDYLARHSAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
              ++L  HN + F                +  P GE  +     +  N+   + Q    
Sbjct: 180 TRPEDLRAHNCLAFAYPAGDEWRTAGTQWRMTGPEGEVLVDVDGSMVANTSAGLYQAARA 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+    +  LV ++ D   P   +   Y +      KL++F  F
Sbjct: 240 GMGVVMLPDALVQRDLQDGRLVALLPDYHLPRRPMNLLYVQDRYRLPKLRSFVEF 294


>gi|91784152|ref|YP_559358.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91688106|gb|ABE31306.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 300

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFVTVAAKGSLSAAASAEGVAPAIIGRRIDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + H+++  +  +    VK SG LR++     G+  +   +  F + +PD
Sbjct: 61  EGSAFLEDCQRIIHEMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  DCA+RL + +  SSL+  +L        A+P YL     P 
Sbjct: 121 VSITLDLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLRLGENRRVCVASPAYLSRRGAPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           S+ +L  HN +  G       +   W+   D  +   ++S  ++ +    +  +C+ G G
Sbjct: 180 SLADLAHHNCLALG---ASANQQRGWMFQQDDKVVSIKVSGTMECSDGAVLHDWCLEGYG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGTDIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|331651203|ref|ZP_08352228.1| LysR-family transcriptional regulator [Escherichia coli M718]
 gi|331050944|gb|EGI22996.1| LysR-family transcriptional regulator [Escherichia coli M718]
          Length = 311

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 19  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 79  ERIIACLEPRIDELEQELESLIQQNGTPSGNIRLSAGEHAARSLVWPKLKPFLRKYPEIS 138

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 139 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W    +      ++   L  +     +   + G GIA
Sbjct: 199 HELQNHRCINI--RLPTAGGLYHWEFEREGKALRVKVDGQLTCSPLPERIDAALSGFGIA 256

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 257 CVPEDMVQEYITSGRLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 307


>gi|239817889|ref|YP_002946799.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804466|gb|ACS21533.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 301

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/296 (29%), Positives = 153/296 (51%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R F  VA  GSF+HAA++L +S++++S+ ++ LET  G++L  R  R ++LT+
Sbjct: 1   MDSLDLIRTFREVASHGSFSHAAKKLDMSKATVSKYVAELETRFGVRLLNRSTRSVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L   ++ V   +E TQ ELQE + +P G+LRI+    +G     G L +F+  YPD
Sbjct: 61  AGQLLLERSTPVLEMVELTQAELQERARQPGGRLRISAPHGMGNGEFPGLLADFMRYYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L N+ +D++ +  D  IR   P+  ++LI RKL+ + M   A+P Y K   +P 
Sbjct: 121 VSISLQLTNRTVDLAEEGIDVDIR-SGPVADANLIVRKLMLMEMVVCASPVYWKKHGKPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  +T   L  + +  F+       P+  P  S +       +++  + G G+
Sbjct: 180 HPRDLAAHEALTHSLLGAQPVWRFD---DGGEPLDVPVKSRMDCTEGAPLIRVAMRGFGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP  +V+   D+  LV +++        +   Y +   N+  L+A  +F+  + 
Sbjct: 237 IYLPSILVQSHIDHGELVPVLQGYARKDMWLSAAYLQRRHNSAALRALLDFLQTRV 292


>gi|290510939|ref|ZP_06550308.1| transcription regulator protein, MDR efflux pump cluster
           [Klebsiella sp. 1_1_55]
 gi|289775932|gb|EFD83931.1| transcription regulator protein, MDR efflux pump cluster
           [Klebsiella sp. 1_1_55]
          Length = 294

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 140/294 (47%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA +GSF  AAE L L  S+++  I  LE  + ++L  R  R ++LT 
Sbjct: 1   MDRIQAMQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +      E+   +E ++  L ES  +P G+LR+     +   ++  +L +F   YPD
Sbjct: 61  EGLQYLAQCREILALIEHSESSLSESVARPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + + ++ +D+  +  DC IR+ + + +SSL+ R L        A+P+YL+    P 
Sbjct: 121 IYLMIGVSDRQVDLIQEGVDCVIRMGE-LNNSSLVARPLGRFRWVTCASPYYLREYGVPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L KH  + +     +  ++F ++         P      VN     ++ C+ G G+
Sbjct: 180 SPEALSKHRAVHYFSGQARRADEFRFVRH-GETFSVPVSGNAAVNETGLYIKMCLAGFGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A L + IV D+     LV ++ D   P   V   YP     +  ++AF  ++  
Sbjct: 239 AQLAENIVADHLQEGRLVEVLTDWQPPPVPVTLLYPHQRFLSPAVRAFAEWMSE 292


>gi|239503615|ref|ZP_04662925.1| transcriptional regulator [Acinetobacter baumannii AB900]
 gi|260555441|ref|ZP_05827662.1| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           19606]
 gi|260411983|gb|EEX05280.1| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           19606]
          Length = 303

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 149/293 (50%), Gaps = 5/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEEQLGVVLFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LRI+  +  GQ      + +F   + 
Sbjct: 61  DEGTLFYEHSRRALSEIQNAAALLDQRKINATGRLRISVPVLFGQLFAAPLMVKFAHQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++++D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRNVDLIEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNKAGPV 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++LD+H  I   D     M+ +      D P      + L +N   +I    + G+G
Sbjct: 181 EHIEDLDQHATI--ADPHFGQMQKWRLQKENDEPFFIKPKAKLLLNDLQAIKNAALAGAG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LPD++++    +  LV++++ + + +F ++  +P       K +   +++
Sbjct: 239 IAWLPDWLIQNELQDGKLVQVLDTMSSTAFPIHLVWPTLPFMPLKTRLAIDYL 291


>gi|157963029|ref|YP_001503063.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848029|gb|ABV88528.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 297

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 142/297 (47%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +D + +F  V +S  F+ AAE L  S S +S++++ LE+ +G++L  R  R + LT
Sbjct: 1   MNKLFDGIVIFVQVVKSAGFSAAAEVLGHSTSYVSKEVNKLESRLGVRLLNRTTRSIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++   ++    E     + +  V P G L+++  +   Q  L+  + E+L  YP
Sbjct: 61  PEGDAYYQQCLQLISDAEQAIGLITQHDVSPRGVLKLSCPVGFAQQHLKPIISEYLKRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L L +K  D+  D  D AIR    ++ SSLI RKL +   +  A+  Y+    +P
Sbjct: 121 NVSLDLDLSDKRTDVIADGYDLAIRASAQLEESSLICRKLYSCKAYTVASKEYISRHGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL+ HN I + +   K    ++++    +         +  N+    +   + G G
Sbjct: 181 HHPRELETHNGICYSN--HKQPSRWDYIDHDGKHFSVDIRPKILCNNGNMQLNLALAGHG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  LP++ ++   +N  L  + +   + +  V+  YP     + K++AF +    + 
Sbjct: 239 ITRLPNFYMQGELENDQLEILFDKFPSANIDVFVVYPSRKHLSPKVRAFIDLAAERL 295


>gi|294139319|ref|YP_003555297.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293325788|dbj|BAJ00519.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 295

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/290 (31%), Positives = 149/290 (51%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + VF  V ++GSFT AAE L L +S+ISR+++ LET +G++L  R  R + LTE G
Sbjct: 3   NINDMLVFAEVIKAGSFTKAAEVLDLPKSNISRKLTRLETHLGVRLIERTTRSIHLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +    +  ++E+ ++ +      P G+L+I  ++ +GQ ++  NL  F+ LYPDI 
Sbjct: 63  QIYLQHCQRIQEEVESAELCVDHLVESPRGQLKICVSVTMGQQIISRNLCRFIALYPDID 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ ID+  +  D AIR+ K ++ SSLI + L  I     A+P        P   
Sbjct: 123 VTLELTNRRIDLIEEGFDLAIRIGK-LEDSSLIAKYLGQIERKLCASPALFNLYALPSIP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL     +     +PK     +    V+     P+I   QVN +LS+ Q C+ G GI +
Sbjct: 182 AELSLLPSLFMTSGMPKNQWLLSREDLVESVHLAPKI---QVNDFLSLSQLCISGCGITM 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y+  +     +L+ I+ +       VY  YP     T K++A  NF+
Sbjct: 239 LPAYLCDEAIIEGSLLHILPEWQCEQSNVYALYPSHKSVTPKVRAMLNFL 288


>gi|260771320|ref|ZP_05880246.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260613636|gb|EEX38829.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|315180920|gb|ADT87834.1| Transcriptional regulator [Vibrio furnissii NCTC 11218]
          Length = 295

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 144/291 (49%), Gaps = 13/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            W+ +  F  VA +GSFT AA++L  S +++SR+I+ LE  +G+KL  R  R ++LTE G
Sbjct: 3   SWEGVSEFVAVAETGSFTRAAQRLATSVANVSRRIALLEERLGVKLLLRTTRKVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   LE  ++ + +    P GKL++   +  G+  +   L +FLL +P ++
Sbjct: 63  QVYYQQCRALLEGLEQAELTVTQMQQTPKGKLKVTAPVTYGEQKIAPLLHDFLLQHPQLE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +L N+ +D+     D A+RL + +  SS I R+L   +++  A PHYL     P ++
Sbjct: 123 LEFVLTNQKLDLIEQGVDVAVRLGQ-LGDSSFIARRLSNRNLYVCATPHYLAQYGTPHTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL +H+ +             +W    ++     R+   +   S + ++   +   G+ 
Sbjct: 182 SELTQHSCLV--------GTHDHWRFKENQQSRAIRVRGRVHCASGVVLLDAALKDMGLV 233

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY V+ +     LV ++         V+  YP+    + K++   +++
Sbjct: 234 QLPDYYVEAHLASGRLVEVLPAYRDEREGVWALYPQNRHLSPKVRLLVDYL 284


>gi|89073952|ref|ZP_01160458.1| Hypothetical transcriptional regulator, LysR family protein
           [Photobacterium sp. SKA34]
 gi|89050280|gb|EAR55784.1| Hypothetical transcriptional regulator, LysR family protein
           [Photobacterium sp. SKA34]
          Length = 300

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 143/292 (48%), Gaps = 8/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  V   GSF+  AE  ++++S +S++IS LETE+G++L YR  R LTLTE G 
Sbjct: 4   IDDLVLFTQVIEHGSFSKVAELNNVTKSVVSKRISKLETELGLQLIYRTTRKLTLTEPGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+     + H  +     ++  S   SGK+R++     G+ +L   + +F   +P + +
Sbjct: 64  VLYHRAKSINHVAQAAFDSVKGYSEALSGKVRMSVPTISGELVLAKAVSDFCQKHPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L+N  +D+  D  D  IR    ++ SSLI R +        A+P Y+++  +P   +
Sbjct: 124 DMSLNNHFVDLVADNYDLVIRTGY-LEDSSLIARHIFNSRWVICASPAYIEHYGKPEKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L+ HN + +    P+    F+W       I   ++S     ++ +++ +  + G+GIA 
Sbjct: 183 DLNCHNCLGYN---PQSTGPFDWQFIKQNKIYNQKVSGNFSSDNAIALKKNVLAGNGIAY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP+ ++ D      LV ++         +Y  YP   K   +++A    I  
Sbjct: 240 LPNCLIHDELERGELVELLSTHAGKVVGIYAVYPYTRKPAKRIQALIEHIRE 291


>gi|262164509|ref|ZP_06032247.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|262026889|gb|EEY45556.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 299

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLENRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIVRNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KHN + +        +                      ++  ++ +  + G GIA +P
Sbjct: 183 LVKHNCLQYAYQTTGATDWE--FKGAKGNYIVKVSGTFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV +  + +     +Y  YP   +   K++     I  +
Sbjct: 241 RCLVYHDFRNGELVDVFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRTR 291


>gi|227328001|ref|ZP_03832025.1| LysR family transcriptional activator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 303

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 134/291 (46%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA +  L++SS+S +IS LE ++G++L  R  R L LT  G 
Sbjct: 5   LQDMALFALVAECGSFTQAARKAGLAKSSLSLRISQLEQQIGLRLLNRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + +Q     PSG+LRI +   LG  LL     EF   +P + +
Sbjct: 65  RYLIHCQEMLQASERADLAVQRLRDNPSGRLRITSPAGLGSTLLARLTAEFQQRFPAVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +++ +  ID+  +  D A R  KP   SSLI R L     +  A+P YL      L  Q
Sbjct: 125 DVLISDDVIDLVQEGFDVAFRTGKP-HDSSLIGRSLGQTPRYLLASPDYLARHAALLHPQ 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I         +   + L     P           ++ L   +  + G+GI LL
Sbjct: 184 QLQQHRCIAHHAWTEWLLHRGSELYRWLLPDSH------ITDNLLYARECAIAGAGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PD++ +D   +  LVR++ D    +  +Y  YP    N+  L  F +F+  
Sbjct: 238 PDFLCRDEAVSGKLVRVLPDWQAEANELYLVYPSRKLNSPALACFIDFVLQ 288


>gi|330811622|ref|YP_004356084.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379730|gb|AEA71080.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 305

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 133/299 (44%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + V+  V  +GS T AA+   +S + +   +  LE  +G++L  R  R   LT
Sbjct: 1   MDL-FQAMTVYVKVVETGSLTAAAQACEMSTTMVGNHLRALEQRLGVRLINRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  ++   EV   +  ++   +++  +P+G LRI   +  G   L   L EF   + 
Sbjct: 60  EFGSAYYQRCLEVLGLVADSERLAEQTQGEPTGTLRITAPLTFGSERLAPALAEFSQRFA 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ ++L N+ +D+     D AIRL  P     LI R L+   +   A+P YL     P
Sbjct: 120 QVKLDVVLTNQRLDLLEHGFDVAIRLGHP--DPKLIARPLMDYTLTICASPAYLARRGTP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL 237
               +L +H+ ++F                ++ P GE   P    + +NS   + +  + 
Sbjct: 178 EKPTDLQQHDCLSFAYSAADEWRFAQDHWPINGPEGEIKVPVNGPMLINSSSGLHRAALA 237

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G G+ +LPD +V     + +LV +++    P   +   Y +      KL++F  F   K
Sbjct: 238 GMGVVMLPDALVAQELKDGHLVTLLQGYQLPHRPMSLMYAQDRYRLPKLRSFVEFALEK 296


>gi|324114572|gb|EGC08540.1| LysR substrate binding domain-containing protein [Escherichia
           fergusonii B253]
          Length = 297

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  I  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANALPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W    +      R+   L  N     +   + G GIA
Sbjct: 185 HELQNHQCINM--RLPTAGGIYHWEFEREGKPLRVRVDGQLTFNLLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 293


>gi|262276133|ref|ZP_06053942.1| transcriptional regulator LysR family [Grimontia hollisae CIP
           101886]
 gi|262219941|gb|EEY71257.1| transcriptional regulator LysR family [Grimontia hollisae CIP
           101886]
          Length = 299

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 129/292 (44%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+ AAEQ +L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSKAAEQNNLTNSVVSKRVARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       +G ++++     G  LL   + EF    P + + 
Sbjct: 64  LLHGAKNVKQATQEAVNSVIGFGENITGHIKMSVPTISGDLLLADAVAEFCSQNPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+NK +D+     D  IR    ++ SSLI R  +       A+P YL    +P + + 
Sbjct: 124 MSLNNKFVDLIEGGYDLVIRTGY-LEDSSLIARHFLDSQWVVCASPEYLSRYGKPATPEA 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   W     +     R+S     ++  ++ +  + G GIA +
Sbjct: 183 LVDHNCLQYAYQTTGASE---WEFKASKGNYIVRVSGSFSTDNATALRKAALGGYGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V  +    NL+ I  + +     +Y  YP   +   K+K     I  +
Sbjct: 240 PRCLVYHDLLEGNLIDIFPEQVGKKLGIYAVYPFTRQPPTKVKMLIEHIRKR 291


>gi|331015557|gb|EGH95613.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 313

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 7/292 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   + + +  F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++
Sbjct: 1   MELHNLNDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSM 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G  L+     V   L+  +  L      PSG+LR++  + LG+  +  +++  L  +
Sbjct: 61  TDDGQVLYERCVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIERCLKDW 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +   ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    +
Sbjct: 121 PSLSVDITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHPQ 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H  + F         +F      DR +       LQ++S  S+ Q  V G 
Sbjct: 181 PQTPDDLSEHQCLHFVSGGRLLPWNFR---VNDRSLSVTHGGRLQMDSAESLHQSAVAGL 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GIA LP Y++ D+     LV+++ +    +  +   YP     + K++ F +
Sbjct: 238 GIATLPSYVINDDLRSGKLVQLLAEYAEAAEPIRVIYPSKRHLSPKIRLFID 289


>gi|253690041|ref|YP_003019231.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756619|gb|ACT14695.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 302

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 133/291 (45%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA +  L++SS+S +IS LE ++G++L  R  R L LT  G 
Sbjct: 5   LQDMALFALVAECGSFTQAARKAGLAKSSLSLRISQLEQQIGLRLLNRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + +Q     PSG+LRI +   LG  LL     EF   +P + +
Sbjct: 65  RYLIHCQEMLQASERADLAIQRLRDNPSGRLRITSPAGLGSTLLARLTAEFQQRFPAVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +++ +  ID+  +  D A R  KP   SSLI R L     +  A+P YL      L  Q
Sbjct: 125 DVLISDAVIDLVQEGFDVAFRTGKP-HDSSLIGRPLGQTPRYLLASPDYLARHPALLHPQ 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I         +   + L     P           ++ L   +  + G+GI LL
Sbjct: 184 QLQQHRCIAHHAWTEWLLHRGSELYRWLLPDAH------ITDNLLYARECAIAGAGITLL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PD++  D+     LVR++ D    +  +Y  YP    N+  L  F +F+  
Sbjct: 238 PDFLCLDDAVSGKLVRVLSDWQAEANELYLVYPSRKLNSPALACFIDFVLQ 288


>gi|172060998|ref|YP_001808650.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993515|gb|ACB64434.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 301

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 135/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LRI+     G+  +   + EF   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRISAPAGFGRRHVAPLVPEFSGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARRGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ EL +HN +    L     +   W       +   R+   ++ +    + ++C+ G G
Sbjct: 180 TLAELARHNCLA---LAANANQQRGWAFQEGDKVVSIRVNGTMECSDGAVLHEWCLAGYG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +++
Sbjct: 237 LAWRSWWEVGGDIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDYL 289


>gi|15677691|ref|NP_274852.1| LysR family transcriptional regulator [Neisseria meningitidis MC58]
 gi|7227112|gb|AAF42190.1| transcriptional regulator, LysR family [Neisseria meningitidis
           MC58]
 gi|316985464|gb|EFV64411.1| uncharacterized HTH-type transcriptional regulator yafC [Neisseria
           meningitidis H44/76]
 gi|325133502|gb|EGC56165.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis M13399]
 gi|325139517|gb|EGC62057.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis CU385]
 gi|325200915|gb|ADY96370.1| putative lysR-family transcriptional regulator [Neisseria
           meningitidis H44/76]
          Length = 299

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S++SR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G L + + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLSVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVIASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEELAGHQCLGFTE--PGSLNTWAVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  L D++V ++     L+ ++ +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IVCLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEEL 293


>gi|301170116|emb|CBW29720.1| predicted DNA-binding transcriptional regulator [Haemophilus
           influenzae 10810]
          Length = 305

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 139/293 (47%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     + + +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGMMYYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----AMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 236 IANLPKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|323530275|ref|YP_004232427.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323387277|gb|ADX59367.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 307

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF  V  +GS T AA    LS + I   +  LE  +G +L +R  R   ++
Sbjct: 1   MDL-LKAMTVFVRVVETGSLTAAAVACDLSPTMIGSHLQALEARLGTRLIHRTTRKQRVS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +    E+   ++ ++    +    P G+LR+   +      L   + E+   YP
Sbjct: 60  AFGQTYYERCVEILGLIDDSERLAHDHLATPRGRLRVTAPVMFNNECLIPAIAEYCDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ ++  +   D+  D  + AIR+   + +  L+ R L+   +   A+  YL+    P
Sbjct: 120 EVKLDIVATDAVSDLLNDGFEAAIRIGA-LGNPDLVARPLMPYRLVLCASRAYLRAHGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
            +   L  H  +T+                ++ P G   +     L++++  ++ +  + 
Sbjct: 179 ATPDALRTHQCLTYAYPPRSEWYAGEPEWVLNGPEGRVAVHVDGRLKIDNSEALRRAALR 238

Query: 238 GSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GIALLP  +V D+     LV ++ D   P   +   Y      + KL++F +F+  +
Sbjct: 239 GLGIALLPAILVNDDLRSKRLVEVLPDYAAPERQLNLLYLPDRHMSPKLRSFIDFVVER 297


>gi|262278744|ref|ZP_06056529.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259095|gb|EEY77828.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 311

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 138/296 (46%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++  F  V  SGSF+  A QL  + S+ISR I+ LE  +G +L YR  R L L+E G 
Sbjct: 10  LNEMATFVKVVESGSFSETARQLGTTPSAISRAIARLERALGTRLLYRTTRKLRLSESGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I I
Sbjct: 70  QVYQRCLDMVNAAQAVMESSGQFHVEPQGIIRLSVPKAVGHFMIHPHLPEFLERYPKIDI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++L+++ +D+  D  D A+R+ +   S  L+ RKL+ I     A P YL+    P    
Sbjct: 130 QMLLEDRYVDLIDDEVDLALRITEQ-PSGGLMGRKLIDIDHLICATPEYLEKHGIPTHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +++ I  G+ I      F      ++ I          N     +   +   G+A L
Sbjct: 189 DLKQYDCIYLGEQISDSKWKFQ---QGNKSISVTVRGRYAANHTGVRLSAALQHLGVASL 245

Query: 245 PDYIVKDNPN---LVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++ +       LV+++ D    ++    ++  YP       KL  F  ++  K 
Sbjct: 246 PYFVARHALQQQTLVQVLPDWDFKTYYSGGLWLLYPPTRHVPPKLSVFIQYLADKL 301


>gi|238026873|ref|YP_002911104.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237876067|gb|ACR28400.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 300

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 131/293 (44%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFIAVAAKGSLSAAAHAEGVAPAIIGRRIDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LR++     G+  +   +  F   +PD
Sbjct: 61  EGSAFLEDCQRIVNDMQNAEASVSAGGVKASGHLRVSGPAGFGRRHVAPLVPAFTAAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSITLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ +L  H  +    L     +   W    D      R+   ++ +    + ++C+ G G
Sbjct: 180 TLDDLAGHQCLA---LAANANQQRGWTFQHDGGTVSIRVNGTMECSDGAVLHEWCLDGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  + +      +++ F +F+
Sbjct: 237 LAWRSWWEVGADIRAGRLVSVLDAFAAPPIGIHAVFAQRRHLPLRVRLFLDFL 289


>gi|34498161|ref|NP_902376.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34104016|gb|AAQ60376.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 302

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 134/298 (44%), Gaps = 11/298 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             +RVF  V   G FT AA+QL L ++++S  +  LE ++G +L +R  R + LT  G  
Sbjct: 5   QAMRVFVAVVDCGGFTRAAQQLQLPRATVSSAVQQLEAQLGARLLHRTTRRVQLTLDGGT 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++    +  +    +    P GKLRI     +G+ +L   L EF  LYP I+++
Sbjct: 65  FYERCQQLLADFDELESLFSQQGASPRGKLRIDVPGPIGRQVLAPALPEFFRLYPGIELE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  DC IR+   +  S L+ R++  +    YA+P YL     P S   
Sbjct: 125 LGVTDRPVDLIQEGVDCVIRVGA-LAESRLVARRIGMLPQGNYASPDYLAAFGAPASPDA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALL 244
           L  H  + +    P   + F W    D    E  +  L  VN   S +   + G G+  L
Sbjct: 184 LAGHRAVNYAS--PSTGKVFAWEYLQDGERRELALQSLVSVNQVESYIACALAGLGMIQL 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF----IFLKAR 295
           P Y  + +     LV ++ D   P+  V   YP     + +++ F  +    +  + R
Sbjct: 242 PRYDAEPHVAAGALVEVLADWPPPAMPVSVLYPHRRHLSRRVQVFVEWAGALLRERLR 299


>gi|50085801|ref|YP_047311.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531777|emb|CAG69489.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 318

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 129/296 (43%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  +GSF+  + Q+  + S++SR IS LE  +G +L  R  R L L+E G 
Sbjct: 10  LQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++    ++ +  +       +   +P G +R++    +G  ++  ++ EFL  YP I +
Sbjct: 70  QIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKIDV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++L+++ +D   D  D AIR+        L+ R+L+ I     A P YL     P    
Sbjct: 130 QMLLEDRYVDFIDDGVDLAIRITDQ-PPGGLMGRRLIEIGHLLCATPEYLAMHGTPEHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I  G+        F       + I          N     +   +   GIA L
Sbjct: 189 DLKQHACIYLGEQPSDSKWKFQ---QGSKSITVAVKGRYSANHTGIRLDAALKHLGIASL 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++ +   ++ +L++++ D    ++     +  YP       KL     F+  K 
Sbjct: 246 PYFVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLAEKL 301


>gi|330821362|ref|YP_004350224.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327373357|gb|AEA64712.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 319

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 140/295 (47%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LR+F     +GSFT AA++L LS+  +SR+++ LE  + ++L  R+ R L +TE 
Sbjct: 1   MQLDDLRIFLATVDAGSFTGAADKLLLSKQFVSRRMAALEAALHVRLLNRNTRKLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  ++   +  +     +  G L+I+  +  G + L   L EFL  +P +
Sbjct: 61  GQAFYLHAQRILAEVAQAEEAMSARRTELHGSLKISAPMSFGMSHLSPLLAEFLAAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L ++ +D+  +  D A+R+ + +  S+L+ R L T+ M A  +P Y ++  EP +
Sbjct: 121 RLEVELSDRRVDLIGEGFDLALRIGQ-LADSTLVARTLGTLRMIACCSPAYRRSHGEPTA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +H  + +G       E      T +          L  N+   +    + G G+A
Sbjct: 180 PAELHRHACLLYGQESRDGWE----FETPEGRRAYAVQGPLIANNGDVVRDAAIAGLGVA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP +IV     +  LV I+    TP   +   YP+  + +  ++    F+  + 
Sbjct: 236 LLPQFIVGPAIASGALVTILAAHATPPLRLSAVYPQHRQGSTAIRTLFAFLEERL 290


>gi|86358949|ref|YP_470841.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86283051|gb|ABC92114.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 351

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D    +RVF  V  +G+FT AA+ L + +++++  I GLE  +  KL  R  R + +T
Sbjct: 48  PMDQLSAMRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVT 107

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  +   +++  +LE     L  S   PSG+LRI  +      ++   L +F   YP
Sbjct: 108 TDGALYYERAAQLISELEELDGSLSNSQSLPSGRLRIEMSGAFADAIVVPALCDFYQRYP 167

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ L + ++ +D  ++  DCA+R   P    SLI R++  + +   A+P Y++    P
Sbjct: 168 DIRLDLGVSDRTVDYLVENVDCALRAGTP-TDQSLIARRVSEMDLITCASPSYIQKFGMP 226

Query: 181 LSIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              ++L   H  + +          F +    +     PR     VN   + +   + G 
Sbjct: 227 ERPEDLEATHYSVNYFRAQNNRTLPFEFRRGNEMVETTPRCIA-SVNDSRTYLTAALTGL 285

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+A +P ++ ++      LVR++ D       +Y  YP     + K++ F +++ 
Sbjct: 286 GVAQVPTFMAREPMRRGELVRVLPDWRRDPVPLYVVYPPNRHLSNKVRVFVDWLV 340


>gi|253690505|ref|YP_003019695.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251757083|gb|ACT15159.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 315

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++++  F      G FT A + L    S +SR+++ LE  +G++L  R  R L LTE G
Sbjct: 13  EFEQITAFLAAVEHGGFTTAGQALGRDGSILSRRVTALEKRLGVRLMERTTRRLALTEAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H+      + L+  + +   ++    G LRIA     G+  +   L  FL  YPD+ 
Sbjct: 73  EAFHQRMRGALNVLQAIEQDTTAAAASVRGTLRIALPATFGRMWIAPILPAFLAAYPDLV 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   +++ +D+  +  D AIR+   +  S L+ R+L        A+P YL+    P   
Sbjct: 133 VETAFEDRYVDLVAESFDVAIRIG-TLTDSRLVARRLAPSRRMLCASPAYLQARGMPSRP 191

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  + F  L    +     L   D+         L  +   S++Q  V G GIA+
Sbjct: 192 ADLGQHACLGFSRLASHPLWH---LRDGDKTAAIRITGPLVTDDAQSLVQAAVSGVGIAM 248

Query: 244 LPDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + D++      +  LV ++       S T+Y  +P A     K +AF ++I  + 
Sbjct: 249 VSDWLAGPELCSGRLVPVLPAHPVENSETIYLVHPSARLVPAKTRAFGDWIASEL 303


>gi|319781816|ref|YP_004141292.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167704|gb|ADV11242.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 294

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 138/292 (47%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + L  F   A  G+F  A   L +S S++ + ++ LE E+G++L  R  R + LTE
Sbjct: 1   MDRLNGLLAFARTAEFGNFVAAGRALGISASAVGKSVARLEQELGVRLLQRSTRRIGLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +     +   ++  +  L  +   P G+LRI+T I +  +LL   L EF+  YP+
Sbjct: 61  EGKLFNERVRRILDDIDDAEAMLSRTRETPRGRLRISTPI-VTYHLLLPVLSEFMARYPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  +++ +D+  +  D AIR  + +  S L+ R +    M   AAP YL+    P 
Sbjct: 120 IELDIDFNDRIVDVIDEGIDVAIRSGE-LPDSRLVSRPVAPFRMLLCAAPSYLERHGTPG 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I F  L    + ++ ++     P      S L  N+  ++    + G GI
Sbjct: 179 EPADLIRHFGINFRFLNSGRLLEWPFITGSAEPQIR---SMLTCNNMEALKGATIAGLGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +PD++V++      L  +++  +         +P     + K++ F +F+
Sbjct: 236 ACMPDFLVREALHEDRLRTVLDGHVDGRGQFRMLWPSNRHLSPKVRVFVDFL 287


>gi|116251032|ref|YP_766870.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255680|emb|CAK06761.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 304

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 8/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF    + GS + A+ +L +S + + + ++ LE  +G +L  R  R  +LT+ G 
Sbjct: 4   FRSMQVFVTTVQEGSMSAASVKLGISPAMVGQHVAALEERLGTRLLNRTTRRQSLTDFGM 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++  ++  T  + + S  KP G LRI      G  +L   L  +  L PD+ +
Sbjct: 64  SYVEQCRDILERVAITDQDAEASQTKPRGLLRITAPTTFGAEVLMPALHRYRKLAPDVTL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++++DI  +  D AIR+ + +  S LI R L    M   A+P YL+    P    
Sbjct: 124 DITLTDRNVDIVEEGFDIAIRIGE-LPDSRLIARHLAPYRMMICASPDYLERHGNPGHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  I F    P     +      D     P+ + + VNS  ++      G G+ + 
Sbjct: 183 ELSGHETIGF---TPAARSPWKLSKGKDEVEVVPK-TAITVNSGQAVRMAARAGLGVIMQ 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  ++  +     LVR+  D       +   Y    + T +L++   F   +
Sbjct: 239 PSILLTSDTQAGLLVRLFPDWHLRERPMSLIYHRDRRMTPRLRSIIAFAIAE 290


>gi|227884691|ref|ZP_04002496.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|301045913|ref|ZP_07193099.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|227838292|gb|EEJ48758.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|300302089|gb|EFJ58474.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|315295128|gb|EFU54463.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
          Length = 315

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 23  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 82

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 83  ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 142

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 143 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 202

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 203 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 260

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V+   ++  L++++++        Y  YP   ++        + +
Sbjct: 261 CVPEDMVQEYIESGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 311


>gi|219871762|ref|YP_002476137.1| LysR family transcriptional regulator [Haemophilus parasuis SH0165]
 gi|219691966|gb|ACL33189.1| LysR family transcriptional regulator [Haemophilus parasuis SH0165]
          Length = 296

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 137/294 (46%), Gaps = 9/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA +GSFT  AE+L +S+  ISR ++ +E  +  +LF R  R + LT+
Sbjct: 1   MDKLTAIKVFMTVAETGSFTATAERLEISKPMISRYVALMEEWLNARLFQRSTRKVALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       + +     + E+     +  G LR+ ++   G   L   +  FL L+P 
Sbjct: 61  AGEQAVLFCQRIANLTAEMEQEMMAQQGELRGALRVTSSQTFGAYHLVQMVNRFLQLHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+L+++ +D+  +  D AIR+       + I RKL   H    A P YL     P 
Sbjct: 121 LNIQLLLNDQTMDLISERIDLAIRITN-TPDPNFIARKLADCHSLLVATPEYLTKFGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H+ ++  ++  K  +        ++ +     S    N   +++   + G GI
Sbjct: 180 QPEDLYQHHYLSHHNINRKAWK----CTQGEQEVLLDLNSRFTTNDTQTLLNSVLDGYGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++LP Y+++       L  ++ D   P+F++Y  YP   K    ++   +F+  
Sbjct: 236 SMLPKYMLEPELQQGKLQAVLTDWQLPTFSIYAMYPSRDKLPLAVRKLIDFLLE 289


>gi|330811368|ref|YP_004355830.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379476|gb|AEA70826.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GS + AAE L LS+  +SR ++ LE  VG +L +R  R L+LT 
Sbjct: 1   MDRLQAMRVFVTVVDLGSQSAAAEHLDLSRPVVSRYLAELEDWVGARLMHRTTRKLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+++     ++       Q  +      P G LRI+ +   GQ  L   + E++  YP 
Sbjct: 61  AGTEILPRCRQMLELSGDMQAAVSTPDDAPRGMLRISASTSFGQAQLASAMAEYVKRYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L + ++ +++  +  D AIR+   +   +LI R+L        A+PHYL+    PL
Sbjct: 121 VSVDLQMLDRTVNLVDERIDLAIRMSNDL-DPNLIARRLTVCRSVICASPHYLREHSTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL +HN +T   +                 +  P    +  N   +++Q  + G+G+
Sbjct: 180 RVEELSRHNCLTHSYVGKSLWH----FEQDGEQVSVPVQGNISANEASTLLQATIAGAGV 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP Y    +     L+R++         +Y  Y         L++  +F+ LK  +
Sbjct: 236 AMLPSYQAGAHIKNGELIRLLPHAEPRRMNMYAVYASRKHMPSALRSLLDFLVLKFPE 293


>gi|258622452|ref|ZP_05717474.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585152|gb|EEW09879.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 299

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIVRNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KHN + +        +                      ++  ++ +  + G GIA +P
Sbjct: 183 LVKHNCLQYAYQTTGATDWE--FKGAKGNYIVKVSGTFSTDNATALHKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV +  + +     +Y  YP   +   K++     I  +
Sbjct: 241 RCLVYHDFRNGELVDVFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRTR 291


>gi|218703580|ref|YP_002411099.1| putative LysR family transcriptional regulator [Escherichia coli
           UMN026]
 gi|218430677|emb|CAR11549.1| putative transcriptional regulator, lysR family [Escherichia coli
           UMN026]
          Length = 311

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 19  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 79  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 138

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 139 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 199 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 256

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 257 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 307


>gi|84515733|ref|ZP_01003094.1| transcriptional regulator, LysR family [Loktanella vestfoldensis
           SKA53]
 gi|84510175|gb|EAQ06631.1| transcriptional regulator, LysR family [Loktanella vestfoldensis
           SKA53]
          Length = 301

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   G FT AA+++ +S+S++S+ +S LE  +G +L  R  R ++ TE
Sbjct: 1   MDRLTEMEAFATVVDQGGFTDAAKRMGISKSAVSKHVSALEARLGARLLNRTTRRVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V +        +      PSG LRI+   D G N L   L  FL  YPD
Sbjct: 61  IGLAYYDRARRVLNDAGEADALVTSMQTAPSGLLRISVATDFGVNHLSQVLGAFLGAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++L+N+ +++  +  D A+R+ + ++ S+L   KL        A+P Y      P 
Sbjct: 121 ITVNMVLNNRYVELISEGFDMAVRIGE-LEDSTLRAHKLTETTRRMIASPGYFTQYGRPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L+ H L+ + +     +      +   R +       L VN   S++  C+ G GI
Sbjct: 180 KIDDLNNHKLLHYSNQSNSAVWKLTAPSGEKRQVRT--AGWLTVNDGQSLLNACIGGLGI 237

Query: 242 ALLPDYIVKDNPN--LV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP ++  D     LV   + D+   +  ++  YP+      K++AF +F+
Sbjct: 238 AYLPSFLYADAMRKGLVAEAIPDLPIETQGIFAVYPQGHFTQPKVRAFVDFL 289


>gi|91782931|ref|YP_558137.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686885|gb|ABE30085.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 342

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 147/294 (50%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SF+ AA+ LH+++SS++  I  LE  + ++L  R  R ++LT 
Sbjct: 1   MDKLQAMQVFTRVVDTNSFSGAADSLHMTRSSVTTIIQALEAYLKVRLLNRTTRRISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   S +   +E ++     +S  P GKL++     +G+ L+   L EF   YPD
Sbjct: 61  DGAAYYERCSRILADVEDSESSFSRASA-PRGKLKVDMPGSIGRLLIVPALDEFHARYPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L + ++ +D+  D  DCAIR+  P+Q S+L+ R++        A+P Y+    EP+
Sbjct: 120 IELMLGVGDRAVDLIQDSVDCAIRMG-PMQDSTLVARRVGVSEFVTVASPDYIARNGEPV 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ EL+ H  + +       + + +++    +P+     S L  N   + +Q  + G G+
Sbjct: 179 SLAELESHTAVNYFSSRNGRIVEMDFVVD-GKPVDVRMRSKLAANDGEAYLQCGLRGLGL 237

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P ++     ++  LV ++ +     F +   YP+    + +++ F  ++  
Sbjct: 238 IQVPHFLALPHLESGALVEVLGNCRPSPFPISAVYPQNRHLSPQVRVFVEWVAE 291


>gi|300934903|ref|ZP_07149957.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300459809|gb|EFK23302.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
          Length = 315

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 23  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 82

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 83  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 142

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 143 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 202

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 203 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 260

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 261 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 311


>gi|299770569|ref|YP_003732595.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
 gi|298700657|gb|ADI91222.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
          Length = 311

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 133/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G 
Sbjct: 10  LNEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I I
Sbjct: 70  QVYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    
Sbjct: 130 QMLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGTPNHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I  G+        F      ++ I          N     +   +   GIA L
Sbjct: 189 DLKQHECIYLGEQASDSKWKFQ---QGNKSISVAVRGRYAANHTGVRLSAALQHLGIASL 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++ +      +LV+++ D    ++    ++  YP       KL     ++  K 
Sbjct: 246 PYFVARHALQQGSLVQVLPDWYFKTYYSGGLWLLYPPTRHVPPKLSVLIQYLADKL 301


>gi|254498468|ref|ZP_05111197.1| putative LysR family transcriptional regulator [Legionella
           drancourtii LLAP12]
 gi|254352323|gb|EET11129.1| putative LysR family transcriptional regulator [Legionella
           drancourtii LLAP12]
          Length = 313

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 140/301 (46%), Gaps = 7/301 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F+         V   GSF  AA++  +S S IS++IS LE+++ I+L  R  R L LTE
Sbjct: 3   NFNISDALTLVCVVDEGSFAAAAKKAGVSSSVISKRISRLESQLRIQLIQRTTRSLALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++  ++     E+ +    PSG LRI   +  GQ  L   + +FL LYP+
Sbjct: 63  SGKIFYERCQKIKTEISEATAEVLQHHQTPSGLLRINVPMSFGQVHLVPAVNDFLELYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI+LIL ++      +  D AI ++    +  L  RK+       Y AP Y K    P 
Sbjct: 123 IQIELILGSQYASFIHNGLDVAIFIKDLPNTHLLKSRKITVRSKGVYGAPSYFKRFGLPK 182

Query: 182 SIQELDKHNLITFGDLIPKCM---EDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVL 237
              +L  HN + +       +   + F W    ++  I  P    L++NS   ++   + 
Sbjct: 183 IPGDLVNHNCLIYQAEPGNQLGIGQRFEWHFCHEQKTIIVPVAGNLRINSSQGLVTAALA 242

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+G+A L  ++V +   N +LV ++ED       ++  YP       K++ F +F+  + 
Sbjct: 243 GNGVAKLSSFMVTEEIKNGSLVSVLEDYCERDIDIHAVYPNQQFLPSKVRVFIDFLIERF 302

Query: 295 R 295
           +
Sbjct: 303 Q 303


>gi|288550300|ref|ZP_05969910.2| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315708|gb|EFC54646.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 297

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 132/291 (45%), Gaps = 8/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V  +G+FT AA+ L+L  +++S+ +  LE  +G++L +R  R +  T +G   
Sbjct: 2   AMRAFTRVVETGNFTRAADSLNLPNATLSKLVKSLEAHLGVRLLHRTTRRVVATPEGQDY 61

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   S V   +E           +P G LRI       + +L   L +FL  YP+I+I L
Sbjct: 62  YEKASRVLIDIEEIDTSFSALQSRPKGYLRIDVGGSTAREVLIPALPDFLQRYPEIRIDL 121

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+     DC IR    +  SSLI R +    M   A P YLK    P    EL
Sbjct: 122 GVSDRPVDLISGNVDCVIR-GGTLDDSSLIARHIGDAPMVTCATPGYLKAAGVPAYPDEL 180

Query: 187 DK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
              H L+++  L P     F +   V+  + E +    + +N   + +   + G GI   
Sbjct: 181 RNGHKLVSY--LSPLTGRAFPFRFIVEGEMRELKTQHHIGINESNAHLAAAMAGMGIIQT 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             Y  KD   N  LV I++     S+  Y  YP+    T +L+ F ++I  
Sbjct: 239 FYYAAKDELNNGTLVEILQAWRPASYPFYVVYPQNRHMTHRLRVFIDWITE 289


>gi|116253518|ref|YP_769356.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258166|emb|CAK09267.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 303

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +G+FT AA+ L + +++++  I GLE  +  KL  R  R + +T 
Sbjct: 1   MDQLSAMRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   +++  +LE     L  S   PSG+LR+         ++   L +F   YPD
Sbjct: 61  DGALYYERAAQIISELEELDGSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L + ++ +D   +  DCA+R   P    SLI R++  + M   A+P Y++    P 
Sbjct: 121 IRIDLGVGDRTVDYLAENVDCALRAGTP-ADQSLIARRVSEVEMITCASPDYIQKFGMPE 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L   H  + +          F +    +     PR     VN   + +   + G G
Sbjct: 180 RPEDLEADHYSVNYFRAQNNRTLPFEFRRHNEVIETSPRYIA-SVNDSRTYLTAALTGLG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           IA +P ++ ++      LVR++ D       +Y  YP     + K++ F +++ 
Sbjct: 239 IAQVPIFMAREPMARGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWLV 292


>gi|269104971|ref|ZP_06157667.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161611|gb|EEZ40108.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 302

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 150/298 (50%), Gaps = 7/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V   GSFT AAE L L++S++SR+++ LE+ +G++L  R  R +TLT++
Sbjct: 1   MDLNTVAIFAQVVECGSFTQAAEALELTKSTVSRKVAELESHLGVRLLTRSTRHITLTQE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++  +++   +   ++E+  +  +  G++ IA  +++GQ +L   + E+L  YP++
Sbjct: 61  GELFYQSCAQMMDIISQAELEVTANQDQVRGRINIAMPVEVGQQVLIPYINEYLRQYPNV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L NK +++  +  D  +++  PI+ SSLI R+  + H    A+P YLK   E  +
Sbjct: 121 VIHLDLTNKPVELISEGIDLYVQIG-PIEDSSLIARQFHSSHRILVASPEYLKQYGEINA 179

Query: 183 IQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L   H  I   +           ++  ++         +QVN+  +    CV   GI
Sbjct: 180 PTDLKDPHYQIRIDNAARVNSAW--QISQNEQEFHIELPHRIQVNTISAAADACVDSLGI 237

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ALLP++I     +   LV ++ +   P   +   Y +      +L+   +F+  K  +
Sbjct: 238 ALLPEFICLPHLETGRLVHLLPEWKMPEVPISLVYSQRNLMPKRLRLLIDFLMSKMEE 295


>gi|241206045|ref|YP_002977141.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859935|gb|ACS57602.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 303

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +G+FT AA+ L + +++++  I GLE  +  KL  R  R + +T 
Sbjct: 1   MDQLSAMRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   +++  +LE     L  S   PSG+LR+         ++   L +F   YPD
Sbjct: 61  DGALYYERAAQIISELEELDGSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L + ++ +D   +  DCA+R   P    SLI R++  + M   A+P Y++    P 
Sbjct: 121 IRIDLGVGDRTVDYLAENVDCALRAGTP-ADQSLIARRVSEVEMITCASPSYIQKFGMPE 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L   H  + +          F +    +     PR     VN   + +   + G G
Sbjct: 180 RPEDLEADHYTVNYFRAQNNRTLPFEFRRHNEVIETSPRYIA-SVNDSRTYLTAALTGLG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           IA +P ++ ++      LVR++ D       +Y  YP     + K++ F +++ 
Sbjct: 239 IAQVPIFMAREPMARGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWLV 292


>gi|91209364|ref|YP_539350.1| transcriptional regulator YcjZ [Escherichia coli UTI89]
 gi|117622574|ref|YP_851487.1| putative transcriptional regulator [Escherichia coli APEC O1]
 gi|218557216|ref|YP_002390129.1| transcriptional regulator, lysR family [Escherichia coli S88]
 gi|237707712|ref|ZP_04538193.1| transcriptional regulator YcjZ [Escherichia sp. 3_2_53FAA]
 gi|331645475|ref|ZP_08346579.1| LysR-family transcriptional regulator [Escherichia coli M605]
 gi|91070938|gb|ABE05819.1| hypothetical transcriptional regulator YcjZ [Escherichia coli
           UTI89]
 gi|115511698|gb|ABI99772.1| putative transcriptional regulator [Escherichia coli APEC O1]
 gi|218363985|emb|CAR01650.1| putative transcriptional regulator, lysR family [Escherichia coli
           S88]
 gi|226898922|gb|EEH85181.1| transcriptional regulator YcjZ [Escherichia sp. 3_2_53FAA]
 gi|331045637|gb|EGI17763.1| LysR-family transcriptional regulator [Escherichia coli M605]
          Length = 322

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 30  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 89

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 90  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 149

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 150 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 209

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 210 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 267

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V+   ++  L++++++        Y  YP   ++        + +
Sbjct: 268 CVPEDMVQEYIESGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 318


>gi|28869807|ref|NP_792426.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853052|gb|AAO56121.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 301

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 132/295 (44%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FLAMRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  ++   EV   +  ++   +++  +P+G LRI   +  G  LL   L  F   +P
Sbjct: 60  EFGTAYYQRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L+L N+ +D+  +  D AIRL    QSS LI R L    +   AAP YL     P
Sbjct: 120 DVKLDLVLTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAAPDYLARHSAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
              ++L  HN + F                +  P GE  +     +  N+   + Q    
Sbjct: 180 TRPEDLRAHNCLAFAYPAGDEWRTAGTQWRMTGPEGEVLVDVDGSMVANTSAGLYQAARA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     LV ++ D   P   +   Y +      KL++F  F
Sbjct: 240 GMGVVMLPDALVQRDLQEGRLVALLPDYHLPRRPMNLLYVQDRYRLPKLRSFVEF 294


>gi|307946693|ref|ZP_07662028.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307770357|gb|EFO29583.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 316

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 133/295 (45%), Gaps = 10/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L  F  VA  GS + A  +  LS S+ S +++ LE E+G +L  R  R ++LTE 
Sbjct: 1   MRLEDLNFFTRVAELGSLSAAGREFGLSPSAASSRLTNLEKELGSQLVARTTRQVSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +         +++  +  +  +   P G LRI+  +  G+  +   L EF  LYPD+
Sbjct: 61  GKIMLEHARAALSEIDQARSTIDAAQDAPRGVLRISANVFFGRKHILPYLGEFRQLYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + + ++ +D+  +  D AIR   P+  SSL+ RKL        A+P Y+     P S
Sbjct: 121 KLDIDMSDRLVDLVNEGYDVAIR-GAPLPDSSLMARKLGGNPRVLCASPDYIARKGAPCS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H+ I F  +        +     +  + +P IS    +S     +  + G G+ 
Sbjct: 180 PDDLRNHDYIGFDPMPVWHFSGPDGEIAFN--LDDPVISG---DSGDFAYEAALYGLGLT 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     V +   +  LV +M D   T +  +Y  YP A     K+ AF +F+  K
Sbjct: 235 VKSSAHVWEDLRDGRLVEVMMDYPITRTGNIYAVYPPAKFLAPKVSAFVDFLISK 289


>gi|325121821|gb|ADY81344.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 301

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 1   MS-FDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           MS FD +   +L +F  V   GSF+  A    ++ S++S+ IS LE  +G++L  R  R 
Sbjct: 1   MSYFDINRSGELAIFIRVVELGSFSAVARACDMTPSAVSKLISRLEKRLGVRLLNRSTRQ 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
             LT +G + +    ++ + L+  +  +  +   P G++RI T+     + L   +  F 
Sbjct: 61  FQLTSEGCQFYEQGIQILNNLDELEQSVTANH-MPQGRIRIHTSFSYWTHFLLPCISLFN 119

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP I+++  L ++ I++     D AIR   P++SS+L+ R L +   H   +P Y++ 
Sbjct: 120 ERYPQIELEAHLSDEVINLVEQRIDVAIRTG-PLKSSNLVARSLGSTQKHYVCSPTYIEK 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYC 235
              P   ++L +H L+     +    ++  WL    D+ I       L+VN   +I+Q  
Sbjct: 179 NGYPQHPEQLYEHQLL----DVSYQRQNKTWLFKKDDQEITLAPTKVLRVNHGEAILQLA 234

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYP-EALKNTGKLKAFRNFI 290
           + G+GIA L  + VK   +   LV+I+ED  I  S   +  +         +++AF +F+
Sbjct: 235 LAGAGIAQLNQFQVKKALEQKQLVKILEDWNIKASEEFHAVWIGHDKYVPKRVRAFLDFL 294

Query: 291 FLKAR 295
              A+
Sbjct: 295 VEHAK 299


>gi|308188544|ref|YP_003932675.1| hypothetical protein Pvag_3077 [Pantoea vagans C9-1]
 gi|308059054|gb|ADO11226.1| Uncharacterized HTH-type transcriptional regulator yhjC [Pantoea
           vagans C9-1]
          Length = 301

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 138/286 (48%), Gaps = 4/286 (1%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V  +GSF+ AA +L  S S  S+ +S LE ++G++LF R  R L+ T+ G   + 
Sbjct: 8   RMFVTVLETGSFSAAALRLGTSSSQASKLVSKLEQQLGVQLFKRSTRALSPTDVGRSYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    ET    ++ES+  P+G+L+I+     G  +L   L  F   YP I++ +  
Sbjct: 68  RVKNLLDAFETLDASVRESATTPTGRLKISAPGSFGTAVLSQVLVAFARRYPLIELDVSF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ++I  +  D AIR+   +  SSL+ RKL  +H+   A+P YL+    P   +++ +
Sbjct: 128 SDRAVNIVDEGFDMAIRIGN-LSDSSLVARKLGEVHVRIAASPIYLEQFGTPQHWRDMAQ 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  I   +        F      +  +  P    L+  +  + +Q  + G GIA LP +I
Sbjct: 187 HQCIIDTNFRDPWHWPFVSGDGSNEIVTVPVRGRLRFANTEACLQAAMAGLGIARLPGFI 246

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                   ++VR++++  TP   ++  YP A     + +   +F+ 
Sbjct: 247 AAPALQQGDIVRLLDNFDTPPLGLFVVYPPARHLAHRARLLIDFLV 292


>gi|218698798|ref|YP_002406427.1| putative transcriptional regulator, lysR family [Escherichia coli
           IAI39]
 gi|218368784|emb|CAR16530.1| putative transcriptional regulator, lysR family [Escherichia coli
           IAI39]
          Length = 324

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 32  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 91

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 92  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 151

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 152 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 211

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 212 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 269

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 270 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 320


>gi|53803391|ref|YP_114870.1| LysR family transcriptional regulator [Methylococcus capsulatus
           str. Bath]
 gi|53757152|gb|AAU91443.1| transcriptional regulator, LysR family [Methylococcus capsulatus
           str. Bath]
          Length = 313

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/272 (24%), Positives = 132/272 (48%), Gaps = 6/272 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L LS++  ++ +  LE  +G++L  R  R L+LTE G        ++   LE T++ +
Sbjct: 24  KELGLSRAMATKHVMQLENSLGVRLLNRTTRHLSLTEVGMVYLERCLQILDDLEETELAV 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
                +P G L++      G   L   +  +L +YPD+ ++L+L    +D+  +  D AI
Sbjct: 84  TRLQTEPRGTLKLNAAPFFGAYHLAPAIAAYLEIYPDVNVELVLQAGYVDLVEEGFDLAI 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
            L + ++ SSLI RKL T       AP Y +    P + ++L KHN ++   L P+  + 
Sbjct: 144 HLDE-LRDSSLIARKLGTSQRIVCGAPSYFEKRGVPKTPEDLKKHNCLSNSSLPPR--DQ 200

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           + +++   +         L+ +S  ++    + G G+ LLP Y+V  +     L  ++ D
Sbjct: 201 WQFVSQDGKSTVIKVSGTLEASSADALRMAAISGLGLVLLPTYMVGQDIRKGRLQAVLTD 260

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +  +  ++  YP     + K++ F +F+  +
Sbjct: 261 YVPAAADIHAVYPHRKHLSAKVRTFVDFLHER 292


>gi|229591355|ref|YP_002873474.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363221|emb|CAY50302.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
          Length = 299

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  VA + SFT A   L +S S+I + I+ +E  +G++LF+R  R +TLT 
Sbjct: 1   MDSLGSLSVFVQVAETRSFTTAGRLLGVSSSAIGKSIARMEQRLGVRLFHRSTRSITLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+     +  +  ++E  + EL E+   P GKLRI+      + LL   L +F+  YP+
Sbjct: 61  EGALFLERSRRILAEVEAAERELTEACATPRGKLRISVPQ--VRGLLMPVLSDFMRAYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  D  IR  KP + S L+ R L    +     P Y +    P 
Sbjct: 119 IELDVDFSDRMVDVIEEGFDAVIRTGKP-EDSRLMARHLGHYQLVLVGTPGYFREHGTPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L +H  +         +E +             R   L   +  S+    + G GI
Sbjct: 178 HPQQLSEHACLRHKFCATGKLEPWPLHLAPGASEPTLRTP-LVSTTIESLNHVVLEGLGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LPDY+V        L R+++D I    + +  +P +   T K++ F + +
Sbjct: 237 ACLPDYMVNHAVREGRLQRVLDDCIEHRGSFWMLWPSSRHATAKVRVFIDHM 288


>gi|209520738|ref|ZP_03269486.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209498827|gb|EDZ98934.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 354

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  VA  GSF  A+  L LS + ++R ++ LE  +G +L  R  R L+LTE G+
Sbjct: 4   LQSMRVFVKVADLGSFVGASGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   LE  +  +   + +P G LRI   +  G + L   ++ +   YPD+  
Sbjct: 64  TYLERVRHILADLEGVEQMVVARNHEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D  I + + ++S+S++ R+L T +M   A P YL     P+  +
Sbjct: 124 DVTLADRHVDLVEEGFDVGILVARHMRSASIVTRRLTTGYMTVCATPDYLAQHGTPMRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ ++         E        D  +     + +  N+   + Q+ +LG G+A+L
Sbjct: 184 DLPRHSCLSRPAEQGGGEERV--FTGPDGEVRVRPTNAIAANNAEMLRQFALLGMGVAIL 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P Y++  +     LVR+++    P   +   YP  L    K++ F + +    +
Sbjct: 242 PSYLIGRDLAAGRLVRLLDGYSLPPIEITIAYPSRLHLPAKVRTFIDHLVEHFQ 295


>gi|313669077|ref|YP_004049361.1| lysR-family transcriptional regulator [Neisseria lactamica ST-640]
 gi|313006539|emb|CBN88003.1| putative lysR-family transcriptional regulator [Neisseria lactamica
           020-06]
          Length = 299

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S+ISR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAISRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEVPQGVLRVDSAMPMVLHLLAPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVVASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +     +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEELAGHQCLGFTE--SGSLNTWAVLDAQGNPYKI--SPHFTASSGEILRLLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++V ++     L+ ++ +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFVVEEL 293


>gi|260222069|emb|CBA31266.1| hypothetical protein Csp_C27680 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 311

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 129/302 (42%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +L  F  VA  GS T AA    ++ + + R++  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDKLKQLESFVSVATRGSLTAAANAEGVAPAIMGRRLDALEERLGVKLLIRTTRRITLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +   +   +  +    VK +G LRI      G+  +   + +F  L+PD
Sbjct: 61  EGSAFLEDCQRIIADVTNAEASVSAGGVKAAGHLRITAPAGFGRRHVAPLVPKFRELHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +DI+ +  DCA+R+   +  SSL+  ++        A P YLK    P 
Sbjct: 121 VTISLNLSDRVVDIAGEGFDCAVRVGD-MPDSSLVSVRMADNRRLCVATPAYLKRHGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDF-------NWLATVDRPIGEPRISCLQVNSYLSIMQY 234
           +  +L + + +T      +               A     I       L  +    +  +
Sbjct: 180 TPADLSRFHCLTLSSDASQTRGWAFKLPAAKGERADTGEVIYLKPAGPLDCSDGQVLHDW 239

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           C+ G GIA    + V++      LV ++ED   P   +Y  +P+      +++ + +FI 
Sbjct: 240 CLGGYGIAWRSTWEVENEIAAGRLVAVLEDYAAPPNGIYAVFPQRKHMPLRVRLWIDFIK 299

Query: 292 LK 293
            +
Sbjct: 300 ER 301


>gi|264677076|ref|YP_003276982.1| cyclolysin secretion ATP-bindingprotein cyaB [Comamonas
           testosteroni CNB-2]
 gi|262207588|gb|ACY31686.1| cyclolysin secretion ATP-bindingprotein cyaB [Comamonas
           testosteroni CNB-2]
          Length = 297

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L+VF+ VA+ GSF  A   L LS ++IS+ I+ LE  VG +L  R  R + LTE
Sbjct: 1   MDRLTALQVFHRVAQRGSFAEAGRSLGLSPAAISKNIAELEAHVGTRLIQRTTRRMALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G       +     L      L      PSG L+++  +      +  ++  FL  YP+
Sbjct: 61  EGRLYLEHVTRALDALADADSALCPFKAAPSGLLKVSAPMTFTLTQISSSIPTFLERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L LD++ +DI  +  D AIR    ++ SSLI R L ++     AAP Y +    P 
Sbjct: 121 LQLDLHLDDRRVDIVREGFDLAIRGSDRLEDSSLIARPLTSMSHVLCAAPGYFEKRGRPH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L+    I F         +F       R       +   V+S L++      G G+
Sbjct: 181 TPADLNGLEHIRFSLSGHADTWEFE---QGGRMESVAVNARYSVSSSLAVRDALRAGFGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +L+P   V+++     L  +++D  T   T+Y  YP     T KL+A  +F+  +
Sbjct: 238 SLIPRPYVEEDLRTGRLQAVLDDWSTVKTTLYAIYPSRQHVTPKLRALLDFLVAQ 292


>gi|295676855|ref|YP_003605379.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436698|gb|ADG15868.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 300

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 139/293 (47%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDRFKQIETFATVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + H ++  +  +    VK SG LR++     G+  +   +  F + +PD
Sbjct: 61  EGSAFLEDCQRILHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSITLDLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLAENRRVCVASPAYLNRRGAPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           S+ EL +HN +  G       +   W+   D  +   ++S  ++ +    + ++C+ G G
Sbjct: 180 SLAELARHNCLALG---ASANQQRGWMFQQDGKVVSIKVSGTMECSDGAVLHEWCLAGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGADLAAGRLVTVLDEFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|209518023|ref|ZP_03266854.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501527|gb|EEA01552.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 300

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDRFKQIETFATVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + H ++  +  +    VK SG LR++     G+  +   +  F + +PD
Sbjct: 61  EGSAFLEDCQRILHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSITLDLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLAENRRVCVASPAYLSRRGAPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           S+ +L +HN +  G       +   W+   D  +   ++S  ++ +    + ++C+ G G
Sbjct: 180 SLADLARHNCLALG---ASANQQRGWMFQQDGKVVSIKVSGTMECSDGAVLHEWCLAGHG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V        LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGTEIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|77461122|ref|YP_350629.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385125|gb|ABA76638.1| putative LysR-family transcriptional regulatory protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 303

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 141/304 (46%), Gaps = 13/304 (4%)

Query: 1   MSFDWDKLRV-----FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L++     F + A  GSFT AA+   ++ +++SR +S +E  +G++LF R  R
Sbjct: 1   MQRHFDDLQLGSIELFCLAAECGSFTGAAQAASVTPAAVSRSVSRMEERLGVRLFARTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G + +   S+   +L   Q E+     +PSG LRI+       + +   L  F
Sbjct: 61  SVKLTDSGRRYYEECSQALAQLVEAQREVMGQQQEPSGTLRISIPTTYAHHRILPLLPAF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              +P +++ + + N++ID   +  D AIR+R  I  S LI R L    +   A+P YLK
Sbjct: 121 RARFPQVKVDMHISNRNIDFVGEGYDMAIRVRA-IPDSGLIARHLEDAALVMVASPDYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI--MQ 233
               P ++++L++H  I +   +P       WL   +    E         S   +  + 
Sbjct: 180 RAGTPQTLEDLEQHECIQYE--LPSNGRRITWLFYDEETPREILAEGNFCCSDDVLGGVT 237

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     +IV+    + +L+ +++     S      YP+      +++AF +F+
Sbjct: 238 LARHGAGLFQTYRFIVEKELADGSLIEVLKPYSGRSRPFTLLYPQNRHMPLRVRAFIDFL 297

Query: 291 FLKA 294
             + 
Sbjct: 298 VEQL 301


>gi|299770562|ref|YP_003732588.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter sp.
           DR1]
 gi|298700650|gb|ADI91215.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter sp.
           DR1]
          Length = 300

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 135/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L++F  +   GSF+ AA+QL++ +++ S  I  LE  +  +L  R  R +  + 
Sbjct: 1   MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELENNLQCRLLERTTRHVRPSL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPD
Sbjct: 61  DGQAFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P 
Sbjct: 121 IELVISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + F          F  L    +       S + VN   + +   + G+G+
Sbjct: 180 QPEDLLSHYCVNFFSTSGGRNYPFE-LMVNGKKQDYFLKSWIAVNDAENYVLSALRGAGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V +   +  LV ++     P  +V   YP+  + + +++ F  ++  
Sbjct: 239 IQVPRYHVANELKDGQLVEVLSAWEIPKMSVSALYPQHRQLSPRVRVFVAWLSE 292


>gi|325526115|gb|EGD03772.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 318

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L  R  R L+LT +G+  +
Sbjct: 1   MEVFTRVVDANSFTRAADTLSMPRASVTTIIQNLEALLGVRLMNRTTRRLSLTAEGAAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  ++      LQ  + KPSG LR+     LG+ L+  +L  F   YPDI + L 
Sbjct: 61  EHCVKIISEIAEVDSSLQTGNRKPSGLLRVHMPSSLGRRLVIPSLTLFRQRYPDITLDLG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP  I +L 
Sbjct: 121 LSDRPVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLRRVTCASPDYLARHGEPREIADLT 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ + F   +        W+  +D    E R+ + + VN   + +   + G G+     
Sbjct: 180 EHHAVNF--RVSHGARAVPWVFMIDGKPVEVRMNATVTVNDSDAYVTCGLEGFGMIQPTL 237

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++V     + +LV ++ D       +   YP+    + K++ F +++   
Sbjct: 238 FMVLPNLLDGSLVEVLPDCNPKPKPISIVYPQNRHLSAKVRVFADWLAEA 287


>gi|254254847|ref|ZP_04948164.1| regulatory protein LysR [Burkholderia dolosa AUO158]
 gi|124899492|gb|EAY71335.1| regulatory protein LysR [Burkholderia dolosa AUO158]
          Length = 352

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 147/297 (49%), Gaps = 9/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF VV R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE G
Sbjct: 49  NLDDLRVFSVVVRLASFSAAAEQLGVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTEAG 108

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++    ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + 
Sbjct: 109 ERVYARAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVVAPALLDFTARYPQLN 168

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   +    LI R+L   +    A+P YL     P S+
Sbjct: 169 VRLDLFDRLVDVAGEGYDLDVRIGDEVAD-HLIARRLAANYRVLCASPDYLARRGTPRSL 227

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+ +   +   +      W   V       ++   L  N     +Q+ + G GI 
Sbjct: 228 ADLASHDCLAIKE---RDHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQWALAGRGIV 284

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L   +      +   L R++ D I P+  ++  YPE +  + K++   +F+    ++
Sbjct: 285 LRSIWEAGPLIERRALCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFLADAFKE 340


>gi|209521036|ref|ZP_03269769.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209498530|gb|EDZ98652.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 307

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 133/301 (44%), Gaps = 7/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++++F + A  GS + AAEQL +S ++ SR +S LE ++G +L  R  R + LT+
Sbjct: 1   MDRLTQIQLFVLTADLGSLSRAAEQLDMSNAAASRTLSLLEEQLGTRLIERTTRRMWLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + HR    V  +L        + SV P G LR+ +++      L   L +FL  YP+
Sbjct: 61  AGREYHRRCGLVLSELAEADSIAADESVSPRGVLRVTSSVSFAMMHLAPALPDFLERYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +QL   N+  +      D AIR ++    S +  R+L        A+P YL     P 
Sbjct: 121 LSVQLTAANQYHNFIEAGIDIAIRTKEHEGDSGITVRRLAETRRVLAASPDYLSTHGRPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L +H ++ +   +         L   +        S L  N    I+     G GI
Sbjct: 181 TPQDLGQHRMLIYNLSVDPHQLH---LGRGEDECTVSISSALDSNEGQVIVAAGRAGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + P YI+ D+     LV ++ED   P  T+   Y        K++ F  F+  + R  +
Sbjct: 238 VIQPMYIIHDDIVAGRLVPVLEDWQLPKLTINLAYQSRRYQPAKIRVFSEFLVERVRSQQ 297

Query: 299 F 299
            
Sbjct: 298 L 298


>gi|269966704|ref|ZP_06180782.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|269828695|gb|EEZ82951.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 328

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAEQL +S+S +SRQI+ LE ++G+ L  R  R L LTE
Sbjct: 30  HINLADIRSFVLIAQLGNFTKAAEQLSVSRSHVSRQITNLEQQIGVTLLQRTTRTLNLTE 89

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G  L++      H ++   + + +      G +RI      LG++++   + +FL+ +P
Sbjct: 90  AGKVLYKQCETALHNIDQAVMAVVDDVEDLRGDIRINCVGGYLGEDVVADIVAQFLIQHP 149

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L   +  +D+  D  D A R+ K +  S+ I RKL+ + M  YA+P+YL+    P
Sbjct: 150 QVSINLDFSSHRVDLIADEFDIAFRMGK-LDDSNFIARKLIDVKMGTYASPNYLETYGYP 208

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L+KH  +T G +     E+ N   + +  I       L+  S   +++  + G+G
Sbjct: 209 SHPKDLEKHICLT-GSVTRWAFENTNTKQSTEHQI----RGQLRCKSGRVMIKSALAGNG 263

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P    +       L  +  +   PS      Y        +++AF +F
Sbjct: 264 IIRVPALYCQQELQTGKLKEVFTNWSIPSVEFSLLYHHDRHQPKRIRAFVDF 315


>gi|190575025|ref|YP_001972870.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190012947|emb|CAQ46579.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 301

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 126/289 (43%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA  GSF  AAE L LS   + + I  LE  +G++L  R  R  +LT+ G    
Sbjct: 7   LRTFAKVAEVGSFAAAAEALDLSPQLVGKHIQALEQHLGVRLLNRTTRKQSLTDFGQAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  +   + +  +P G+LRI+  +  G + L   +  ++  YPD+Q+ L 
Sbjct: 67  ARARVILEEVEGAEELAEVARGRPMGRLRISAPVTFGVHALGPAVVAYMQQYPDVQVDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N  +DI  D  D   R    +  S L+ R+L    +   A+P YL +        +L 
Sbjct: 127 LSNSLVDIVEDGYDLVFRTGD-LADSGLVARRLGPYPLVLCASPDYLASRPAITHPNDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + F   I +    F         +  P  S   VN    ++   V G G+ L P  
Sbjct: 186 RHECLGFAHSIIRTRWSFR--DADGSVLTVPVSSRFMVNQAEPLLTAAVGGLGLILQPYE 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++        LV ++ D +  S  +   YP   + T KL++F +F   +
Sbjct: 244 MLAAALARGELVEVLPDHVPVSTWINLVYPRDRQLTPKLRSFLDFCVAR 292


>gi|239503475|ref|ZP_04662785.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB900]
          Length = 306

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 139/294 (47%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + L  F ++ + GS    A +L+L+  ++SR+++ LE  +G++L  R  R ++LT
Sbjct: 1   MNADTE-LAFFCLLVKQGSLVATARELNLTPPAVSRRLTQLEERLGVRLLNRTTRRISLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G         +  +++  +  +  S   P G LR+   +  G++ +   +  F  +YP
Sbjct: 60  SEGEVYFENAVRILKEIDEMERLVSSSRAAPKGVLRVNAPLGFGRSYIAPAISTFAKIYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ +QL L ++ I++  +  D +IR  + I  S LI +KL        A+P YLK   +P
Sbjct: 120 DVDVQLHLTDRPINLPDEAIDVSIRFGE-IPDSRLIAKKLAANRRLLCASPSYLKKAGQP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           L+  +L +H  I             NW  +  + +   ++   L  N     + + + G 
Sbjct: 179 LTPHDLTQHQCIVIRQNDSAYG---NWRLSHGKQVETVKVHGQLSTNDGAVALNWALEGY 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  ++ V     +  LV+++ D  TP   VY  Y E L  + K+  F + +
Sbjct: 236 GILMRAEWDVAKYLRSGRLVQVLADYETPPADVYAVYLERLNLSPKVAHFLDHL 289


>gi|194366348|ref|YP_002028958.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349152|gb|ACF52275.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 301

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 126/289 (43%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA  GSF  AAE L LS   + + I  LE  +G++L  R  R  +LT+ G    
Sbjct: 7   LRTFAKVAEVGSFAAAAEALDLSPQLVGKHIQALEQHLGVRLLNRTTRKQSLTDFGQAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  +   + +  +P G+LRI+  +  G + L   +  ++  YPD+Q+ L 
Sbjct: 67  ARARVILEEVEGAEQLAEVARGRPMGRLRISAPVTFGVHALGPAVVAYMQQYPDVQVDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N  +DI  D  D   R    +  S L+ R+L    +   A+P YL +        +L 
Sbjct: 127 LSNSLVDIVEDGYDLVFRTGD-LADSGLVARRLGPYPLVLCASPAYLASRPAIAHPSDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + F   I +    F         +  P  S   VN    ++   V G G+ L P  
Sbjct: 186 RHECLGFAHSIIRTRWSFR--DADGSVLTVPVSSRFMVNQAEPLLTAAVGGLGLILQPYE 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++        LV ++ D +  S  +   YP   + T KL++F +F   +
Sbjct: 244 MLAAALARGELVEVLPDHVPVSTWINLVYPRDRQLTPKLRSFLDFCLAR 292


>gi|90578240|ref|ZP_01234051.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90441326|gb|EAS66506.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 289

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/294 (30%), Positives = 138/294 (46%), Gaps = 11/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D + +F  VA   SF  AAE   +  S++SR+IS LE  +G++L +R  R + LTE G
Sbjct: 3   SLDDMALFVEVANVMSFRQAAEITGVPNSTLSRRISALEKAIGLRLLHRTTRKIELTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +    +L + +  PSG +R++  ID   + +   L EF   YP+I+
Sbjct: 63  QLYYERCRRIVEEAKLAHQQLSDIAENPSGTVRVSAPIDFATHFIAPLLPEFSKQYPEIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  L ++ +D++ +Y D AIR  +  +SSSLI RKL   H + Y +P YL    EP   
Sbjct: 123 LEFDLSSRRMDMTSEYFDVAIRAGES-ESSSLIARKLANFHHYVYGSPAYLAQYGEPQLP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H   +        M       + D+       S L VNS   I Q  VL  G+ L
Sbjct: 182 DELTQHQCFSIVKSAHWAMH------SEDKSADIKVNSKLFVNSIGMIKQLIVLNMGLGL 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP  ++ D      L RI+ D  +    +Y    E      K + F NFI  K 
Sbjct: 236 LPQEMITDELAQGTLQRILPDWQSSPVPIYAIT-ETRLLPAKTRCFINFIQSKL 288


>gi|317053276|ref|YP_004119043.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953015|gb|ADU72487.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 298

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +   VF  VA + SF  A   L +S S+I + +  LE ++G++LF+R  R +TLT 
Sbjct: 1   MDSLNGFVVFVQVAETRSFVAAGRLLGVSASAIGKSVVRLEEKLGVRLFHRSTRSVTLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS     +  +  ++E  Q+EL +++ +PSG+LR++    L   L+   L  F+  YP 
Sbjct: 61  EGSLFLERSRRILAEIEAAQLELSQATSEPSGRLRVSLP--LVSPLMLPVLAAFMRAYPK 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++ +D+  +  D  +R   P   S L  R+L T      A+P YL     P 
Sbjct: 119 IELDLDFTDRLVDVIEEGFDAVVRTGDP-ADSRLSARRLGTFRSLLVASPDYLAQRGTPH 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +       +E +      D P      S +  N+  + + + + G GI
Sbjct: 178 KPADLLDHTCLHYRFPNSGKLEPWVLRHDADEPRLMVPTS-MICNNIETRVCFALQGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LP++ +++      L  ++ +    +   +  +P +   + K++AF +F+  + 
Sbjct: 237 AYLPEFAIREPLAEGRLCAVLSEYAERTGVFHVLWPASKHPSPKVRAFVDFLSARV 292


>gi|50122824|ref|YP_051991.1| LysR family transcriptional activator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613350|emb|CAG76801.1| LysR-family transcriptional activator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 301

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 134/291 (46%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA +  L++SS+S +IS LE ++G++L  R  R L LT  G 
Sbjct: 5   LQDMALFALVAECGSFTQAARKAGLAKSSLSLRISQLEQQIGLRLLNRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + +Q     PSG+LRI +   LG  LL     EF   +P + +
Sbjct: 65  RYLIHCQEMLQASERADLAIQRLRDNPSGRLRITSPAGLGSTLLARLTAEFHQRFPAVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +++ +  ID+  +  D A R  KP   SSLI R L     +  A+P YL      L  Q
Sbjct: 125 DVLISDAVIDLVQEGFDVAFRTGKP-HDSSLIGRSLGQTPRYLLASPDYLARHSALLHPQ 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I         +   + L     P           ++ L   +  + G+GI LL
Sbjct: 184 QLQQHRCIAHHAWTEWLLHRGSELYRWLLPDAH------ITDNLLYARECAIAGAGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PD++ +D   +  LVR++ D    +  +Y  YP    N+  L  F +F+  
Sbjct: 238 PDFLCRDEAVSGKLVRVLPDWQAEANELYLVYPSRKLNSPALACFIDFVLQ 288


>gi|315287780|gb|EFU47183.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
          Length = 315

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 23  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 82

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 83  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 142

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 143 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 202

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 203 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 260

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V+   ++  L++++++        Y  YP   ++        + +
Sbjct: 261 CVPEDMVQEYIESGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 311


>gi|239503574|ref|ZP_04662884.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB900]
          Length = 311

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G 
Sbjct: 10  LNEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I I
Sbjct: 70  QVYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    
Sbjct: 130 QMLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPKYLAKHGTPNHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H  I  G+        F      ++ I          N     +   +   GIA L
Sbjct: 189 NLKQHECIYLGEQASDSKWKFQ---QGNKSISVAVRGRYAANHTGVRLSAALQHLGIASL 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++ +       LV+++ D    ++    ++  YP       KL  F  ++  K 
Sbjct: 246 PYFVARHALQQGTLVQVLPDWYFKTYYSGGLWLLYPPTRHVPPKLSVFIQYLADKL 301


>gi|254482988|ref|ZP_05096223.1| LysR substrate binding domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036673|gb|EEB77345.1| LysR substrate binding domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 292

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 136/293 (46%), Gaps = 13/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  V R GSFT AA+ L +S+S +SRQI+ LE  +  +L  R  R ++ T+ G 
Sbjct: 6   WESIEAFERVVRLGSFTRAADDLGVSRSHVSRQINALENRLDAQLLLRTTRKVSTTDVGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +V   L+  +  + +    P G LR+      G++ +     +F+  Y D+ +
Sbjct: 66  AFYMQCRQVLDNLDEAERAVLDLQANPRGILRVTVAGAFGEDFIAPAALDFMAEYRDLIV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ ID+  +  D AIR    ++ SSLI R++ T  +   A+P YL     P SI 
Sbjct: 126 ELNFSNRLIDLISEGYDVAIRAG-TLKDSSLIARRISTRKLLTCASPEYLLRNGTPSSIH 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
            L  HN +             +W    +    + R+S   + N+  S+++    G G+  
Sbjct: 185 SLTNHNCLL--------GTLDSWRFRENGRNQDLRVSGNWRSNNGRSLLRAARAGLGLVQ 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP + +     +  L+ ++ED       V+  YP     + K++ F NF+  +
Sbjct: 237 LPSFYLDQDIIDGALLPVLEDYNPTDTGVWAVYPHNRHLSAKVRLFVNFLADR 289


>gi|27378359|ref|NP_769888.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27351506|dbj|BAC48513.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 297

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 136/283 (48%), Gaps = 7/283 (2%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V  SGSF  A  QL LS+S+IS+ I+ LE  +G++L  R  R  + TE G +       +
Sbjct: 3   VVESGSFAEAGRQLRLSRSAISKYIADLEESLGVQLLNRTTRHASPTENGQRYFERAVVI 62

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
             ++E     + ++   P G LR+   +  G   L   L +F+  Y ++Q+Q++L +  +
Sbjct: 63  LSEIEAADQAVAQAQSAPRGLLRVNAPMSFGTMRLGPVLADFMARYGELQLQIVLSDDLL 122

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D   D  D  +R+ + ++SSSLI RK+  +     A+P YL     P   Q+L +H  +T
Sbjct: 123 DPVQDGFDVTLRIAE-LESSSLIARKITPVARMICASPDYLARHGTPKHPQDLREHASLT 181

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN- 252
           +G L+         L   D          L VN+   +    + G G+ALLP++I  D  
Sbjct: 182 YGFLLTGNQWK---LTGSDGDHWIQPAWSLCVNNAEVLRDVAIKGRGLALLPEFIAADAL 238

Query: 253 --PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               L+ +++D   P   +Y  YP     + K++ F +F+  +
Sbjct: 239 RKGELLTVLDDYSAPPLALYAVYPPTRHLSVKVRLFIDFLVER 281


>gi|89094200|ref|ZP_01167142.1| putative transcriptional regulator, LysR family protein
           [Oceanospirillum sp. MED92]
 gi|89081455|gb|EAR60685.1| putative transcriptional regulator, LysR family protein
           [Oceanospirillum sp. MED92]
          Length = 301

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 145/293 (49%), Gaps = 7/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ + D + +F  V +  SF   AEQ  ++ S +S+ IS LE  +G++L  R  R L LT
Sbjct: 1   MN-NLDDMLLFAQVVKLKSFRAVAEQRGVASSVVSKHISRLEKHLGVQLLIRTTRKLNLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  R   ++   +   +  + + + +P G LRIA  +  GQ  L   + E+L LYP
Sbjct: 60  EAGREFFRHCQQLESSVALAERAVSQHAEQPQGLLRIAAPMISGQYFLPAVIDEYLRLYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++++I+ +   D+     D AIR    +  SSL  R+LV    +AYA+P YL+    P
Sbjct: 120 DMRVEMIIKDSFQDLVSSGFDLAIRTG-TLSDSSLRARRLVESRWYAYASPDYLQTHGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L  HN + F        E    + T  +P         + +S +++ +  V G G
Sbjct: 179 SAIDDLALHNCLQFSYQETGPHEWP--VTTGGKPGKVKVQGRFEASSLVTLREASVSGMG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +P Y+V++      LV +++D I     +Y  YP       K+ AF + +
Sbjct: 237 IAFMPVYLVREQVKQGQLVAVLQDHIYRDVGIYAIYPNIRYVPRKISAFIDIL 289


>gi|212637060|ref|YP_002313585.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212558544|gb|ACJ30998.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 327

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 150/294 (51%), Gaps = 7/294 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D +D L++F  +++ GSFT AA +L+++QS++S++I+ LE ++G  LF+R++R + LT
Sbjct: 27  AMDKFDCLQIFVKISQLGSFTAAANELNITQSAVSKKIAWLENKLGFALFHRNSRQIQLT 86

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            QG +  + +     ++   +  L+E   +  G+L+++    +   LL   + +F+ L+P
Sbjct: 87  TQGVQYLQYSERFIDEMTHFESSLKEELEQVKGQLKLSVPSSIATQLLLQPINDFMDLHP 146

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +   ++++ +D+     D AIR    ++ S    R L        A+P YL     P
Sbjct: 147 GLTVDTSVNDRQVDLIESNIDIAIR-AAVLEDSGYKARFLFNNQAVYVASPRYLLGREAP 205

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +   +L  HN +T+  + P  +        VD  +    +   + +S   +++  +LG G
Sbjct: 206 ILASDLQSHNCLTYSLMSPSNIWSLRKGGKVDAKVMVKEV--FKSDSPELLLEMALLGRG 263

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           I  LP+++V +     +L++++    + +  +Y  +        +++AF +++ 
Sbjct: 264 ITALPNWMVAEQLKTGSLIQVLTSYQSIALPMYAVFKNDDYQPYRVRAFIDYLI 317


>gi|171317219|ref|ZP_02906418.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097594|gb|EDT42429.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 330

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 145/295 (49%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE G
Sbjct: 29  NLDDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTEAG 88

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + 
Sbjct: 89  ERVFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLN 148

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I    LI R+L T H    A+P YL     P ++
Sbjct: 149 VRLDLFDRLVDVAGEGYDLDVRIGDEIAD-HLIARRLATNHRVLCASPDYLARRGTPRTL 207

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+ +   +   +      W   V       ++   L  N     +Q+ + G GI 
Sbjct: 208 ADLASHDCLAIKE---RDHPFGVWRLNVRGETSTVKVGGALSTNHGEVAVQWALAGRGIV 264

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L   +      +   L R++ D I P+  ++  YPE +  + K++   +F+    
Sbjct: 265 LRSIWEAAPLIERGELCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFLVEAL 318


>gi|167581443|ref|ZP_02374317.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 300

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 136/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LR++     G+  +   +  F   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G
Sbjct: 180 TLADLARHNCLA---LAANANQQRGWTFVDDGKVVSIRVSGTMECSDGAVLHEWCLEGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|289626322|ref|ZP_06459276.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646584|ref|ZP_06477927.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868296|gb|EGH03005.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 301

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 129/298 (43%), Gaps = 7/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    EV   +  ++   +++   PSG LRI   +  G  +L   L  F L +P
Sbjct: 60  EFGTAYYERCLEVLGLVAESEQLAEQAQGDPSGTLRITAPLTFGSEVLAPALAGFSLRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+L N+ +D+  +  D AIRL    QSS LI R +    +   AAP YL     P
Sbjct: 120 EVKLDLVLTNQRLDMIDNGFDIAIRLGNIPQSSPLIARPMQDYTLTICAAPSYLARHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
               +L  HN + F                +  P GE  +     +  N+   + Q    
Sbjct: 180 AHPGDLGAHNCLAFSYPAGDEWRTAGTQWRMTGPEGEVLVDVDGSMVANTSAGLYQAACA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G G+ +LPD +V+ +     LV ++     P   +   Y +      K+K+F  +   
Sbjct: 240 GMGVVMLPDALVQRDLQEGRLVALLPGYHLPRRPMNLLYVQDRYRLPKVKSFVEYAMA 297


>gi|311105376|ref|YP_003978229.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760065|gb|ADP15514.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           57 [Achromobacter xylosoxidans A8]
          Length = 310

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 140/294 (47%), Gaps = 8/294 (2%)

Query: 1   MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M    D L+    F  VA SGSFT AA +L +S +S+S+ +S LE ++G+KL  R  R L
Sbjct: 1   MYILIDHLKHVLNFVRVADSGSFTAAAHRLDISTASVSKSVSLLEAKLGVKLLNRTTRNL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT+ G  L +    +  ++E  + E+  +S  P GKLR+   + LG+ ++   L     
Sbjct: 61  SLTDDGELLLQRCRHILLEVEAAEAEVTGASESPRGKLRVHAPVGLGRKVIMPALLSLTA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP++ I     ++  +++ +  D  IR+      S +I + L  +     A+P YL   
Sbjct: 121 RYPELSINADFSDRIPNLAEEGLDATIRIG-VTADSRVIAKNLSQLRYVTCASPAYLAAH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P +  EL++HN + +         ++++    +R    P    L VN   +I+   V 
Sbjct: 180 GTPTTPAELERHNCLAYVQWQTGRYHEWDFQKGDERYTITPG-GNLNVNHPEAILDAVVA 238

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+GIA +  +I +    +  L  ++ D + P   V   Y      + +++AF +
Sbjct: 239 GAGIARMASFIAESAVMDGRLKLVLTDWMAPGAPVQLVYLPNRHLSPRIRAFVD 292


>gi|237731565|ref|ZP_04562046.1| LysR family transcriptional regulator [Citrobacter sp. 30_2]
 gi|226907104|gb|EEH93022.1| LysR family transcriptional regulator [Citrobacter sp. 30_2]
          Length = 301

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 10/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   G F  AA+ LHL + ++++ I  LE ++G KL  R  R ++LTE+G   +
Sbjct: 1   MNIFVQVVEQGGFARAADVLHLHRPAVTKAIQHLEDDLGAKLLNRTTRKVSLTEEGDAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T  +   ++        +   P GKLR+   + L  ++L   LK+F   YPDI++ L 
Sbjct: 61  QRTKILLSDVDDIMASFSPA-RPPRGKLRVNAPLSLAHSVLVPALKDFQSRYPDIEMVLT 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ ID+  +  DC IR+ + +Q S+LI R+L  + M   A+P YL+    P   ++L 
Sbjct: 120 STDRRIDMLAEGIDCMIRIGE-LQDSTLISRRLGEVKMVTCASPDYLQKQGVPQVPEDLS 178

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI-----A 242
           +H  + F     +   ++ ++         P    + V++   ++  C+ G GI     A
Sbjct: 179 RHQALNFFSERHREALEWTFVNRGKTESFTP-AGRISVDNSDILLTGCLSGLGIIRGVHA 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +L  Y+   +  LV ++ D    S  V   YP+      +++ F +++  
Sbjct: 238 VLAPYL--QSGQLVEVLADYTGESKPVSVLYPDRRHLAPRVRVFIDWLCE 285


>gi|295097247|emb|CBK86337.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 295

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 134/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  SGSFT AA +L +S   + + I+ LE+++G +L  R+ R  +LT+
Sbjct: 1   MDKLRGMETFIAVVESGSFTGAAARLEMSAVMVGKYIAQLESQLGTRLLERNTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  ++   +  ++     P+G LR+      G  ++      FL  YP+
Sbjct: 61  AGRVYFEEARRVLEQVSIAENAVERLRATPAGTLRVTAPTSFGGCVIAPLTATFLQRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L L N+ +D+  +  D AIR+ + I++  L+ + L   +M   AAP YL     P 
Sbjct: 121 VRIELDLTNRMVDLVEEGVDLAIRIGE-IRNEDLVAKYLCPYNMVICAAPDYLARHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  ++      +       L  V+  +   R + L+ N    +      G+G+
Sbjct: 180 TPADLVDHLCLSHTVWTARNEWR---LPGVEGEVRWKRDAVLRCNDGYGLRMAARAGAGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L P+ +V +   +  LVR++E        V+  + + L+   KL  F   I L+ 
Sbjct: 237 LLQPEVLVAEELASGRLVRVLEAFTPAPRPVHLLWRQDLRPLPKLTEFIAHILLRL 292


>gi|260769265|ref|ZP_05878198.1| transcriptional regulator LysR family precursor [Vibrio furnissii
           CIP 102972]
 gi|260614603|gb|EEX39789.1| transcriptional regulator LysR family precursor [Vibrio furnissii
           CIP 102972]
          Length = 303

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 142/300 (47%), Gaps = 9/300 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F   A+  +FT AAE+L+L++S++++ +S LE  +G+KL +R  R LTLT +G 
Sbjct: 7   FSGITAFVCTAQHKTFTAAAERLNLTKSAVAKSVSRLEERLGVKLLHRSTRQLTLTPEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   ++  +LE  +  LQ    KPSGKLRI      G+  +   L      YP++ +
Sbjct: 67  AYLKSCLDILGQLECAEALLQAKVDKPSGKLRIDLPAAFGRKKVLPLLLAMSAQYPELSL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  + + +DI  +  D  +R+ +  +SS L+ R L    M   AAP Y+     P S  
Sbjct: 127 AVTFNERFVDIVEEGLDVVVRIGELQESSGLVARHLTVQKMVMCAAPDYVARRGVPSSFD 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H+ +    +  K  +  +W+        +     +  + +   +I +  + G GI+
Sbjct: 187 DLKNHDCV----VSLKQNQPLSWVVKNCDGETVRFKPPATHEFSDGDAIREAVIAGCGIS 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LP ++++D+     L  ++      S  ++  +P+      K++   + +   A+  +F
Sbjct: 243 QLPLWLIRDDLQAGRLQEVLPGHCAGSSPIHAVWPKNRHLLPKVRFVIDELVEFAQQGQF 302


>gi|68250121|ref|YP_249233.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           86-028NP]
 gi|68058320|gb|AAX88573.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           86-028NP]
          Length = 305

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGIMYYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----AMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 236 IANLPKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|238895073|ref|YP_002919808.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547390|dbj|BAH63741.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 305

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A + SF  AA  L +S S++ + ++ LE ++G++LF R  R ++LT 
Sbjct: 1   MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  +++  + EL  S  +P+GKLRI+  + +G  LL   L  F  LYP 
Sbjct: 61  EGAAFLTRCQSILEQIQEAESELTSSLSQPTGKLRISLPV-IGYRLLLPALTAFSRLYPQ 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ +++  +  D AIR  + +  S LI R L        A+P YL     P 
Sbjct: 120 VELDLDFSDRLVNLIDEGVDVAIRSGE-LADSRLIARTLGGFRFVLCASPAYLAEYSAPG 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
           S  EL  H  I F    P       W     R  G+ R  + + VN+  + ++    G G
Sbjct: 179 SPAELAAHKCIFF--RFPATGLIQPWELRGMRLTGDFRAAAVMTVNNIEAAIRLSAAGMG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA +PD++++   D   L  ++             +P +   + +++ F +FI   
Sbjct: 237 IAYVPDFVLREAMDEGQLQEVLPGCCVKDGHFSVLWPASRYLSPRIRCFIDFIAAA 292


>gi|212636847|ref|YP_002313372.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212558331|gb|ACJ30785.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 296

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 144/298 (48%), Gaps = 5/298 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +D + +F  V +SG F+ AA+ L  S S +S++++ LE  +G++L  R  R + LT
Sbjct: 1   MNKLFDGVVIFAQVVKSGGFSAAADALGHSTSYVSKEVNKLEARLGVRLLNRTTRSIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++   ++    E     + +  V P G L+++  I   Q  L+  + E+L LYP
Sbjct: 61  PEGDAYYQQCLQLISDAELAVGLITQHDVSPKGVLKLSCPIGFAQTHLKAIISEYLQLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L L +   D+  D  D AIR    +  SSLI RKL +      A+  Y+    +P
Sbjct: 121 NVSLELDLSDNRTDVIADGYDLAIRASSQLDESSLICRKLYSCGAFTVASKAYISRHGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL  HN I + +L  K    ++++    +P        +  N+    +   + G G
Sbjct: 181 YHPRELATHNGICYSNL--KTPSRWDYVDKDGKPFSVDVRPKVLCNNGHMQLAMTLEGHG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A LP + +++   +  L  + ED  T +  V+  YP     + K++AF +    + R
Sbjct: 239 VARLPLFYMQEALQDNQLQVLFEDFPTTTVDVFVIYPSRKHLSPKVRAFIDLAADRLR 296


>gi|85712422|ref|ZP_01043471.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
 gi|85693700|gb|EAQ31649.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
          Length = 292

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/296 (29%), Positives = 136/296 (45%), Gaps = 13/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +  F  VA++ SFT AA+QL LS + +SR I+ LE  + + L YR  R ++LTE+GS
Sbjct: 4   WQGISEFVAVAQTSSFTSAAKQLGLSVAQVSRNIAALEQRLKLPLLYRSTRSVSLTEEGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L      +Q+ S KP G +R+   +  G++++   + +FL  YPD ++
Sbjct: 64  LYLPHCQHLVASLNDADQAIQQRSEKPQGLIRLTAPVFYGEHVIAPLVNDFLNQYPDCRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N  +D+   + D AIRL   + +  L    L         AP Y +   EP  + 
Sbjct: 124 DFNLTNDTLDLIEGHYDLAIRLGH-LGTPRLKASPLGRRRHFLVGAPAYFERFGEPTHLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIAL 243
            L  H  +T            +W   VD  +   + + L   NS L+I      G GIA+
Sbjct: 183 SLADHRCLT--------GTLKSWRFQVDGKVKTVQPNALVHCNSGLAIKDAVCKGLGIAI 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LPDY V D      L  +M +   P   ++  YPE+     K++   +F+ +K  D
Sbjct: 235 LPDYYVADELEAGVLQEVMTEYRQPDDGIWALYPESRHRIAKVRVLIDFLKVKLTD 290


>gi|319794055|ref|YP_004155695.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596518|gb|ADU37584.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 310

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 137/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L+VF  VA +GSFT AA++L L +++IS  +  LE  +G +L +R  R ++LT 
Sbjct: 1   MDRIDLLKVFLSVAETGSFTRAADRLALPRAAISTAVQQLEARLGSRLLHRTTRRVSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +   +E  + +   +    SG+L++     + + L+   L +F   +P 
Sbjct: 61  DGEALLERARALVTDMEDIEQQFLPAHSNVSGRLKVDVPSRIARLLIAPALPDFFARFPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +D+ ++  DCA+R+  P+ SSSL+ R L    +   A+P YL     P 
Sbjct: 121 IELELGSSDRAVDLVLEGVDCALRVG-PLASSSLVARPLGHFTLINCASPAYLARHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + +          + W    +      R S +  N+  + +   + G G+
Sbjct: 180 TPADLPAHLAVNYASPTSGRAAPWEWQRDGETATLRMR-SQVAANNAETYIACALAGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V+ +     LV ++ D       V   YP     + +++AF  ++
Sbjct: 239 IQIPAYDVRGHLAAGELVEVLADARAEPLPVQLVYPHRRNLSRRMQAFAGWL 290


>gi|317047014|ref|YP_004114662.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316948631|gb|ADU68106.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 302

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 136/294 (46%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGSF+ AAEQLH++ S++SR +  LET++G+ L  R  R L LT
Sbjct: 1   MKASSDELKVFIAVVESGSFSRAAEQLHMANSAVSRTVKKLETKLGVALLTRTTRQLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    R   ++  ++ T + EL +    P G LRI     +  +LL   +K F   YP
Sbjct: 61  HEGEHYFRRVQKLMQEMSTAESELIDRQQAPRGVLRIDAATPVILHLLLPMVKPFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + LI     I++     D AIR    +  S+L  R L   +    A P YL     P
Sbjct: 121 DVTLSLISSESFINLIERKVDVAIRAG-TLTDSTLRARLLFISYRKLVATPAYLAKRGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L +H  + F + +        W    +          +  NS  +I Q C+  +G
Sbjct: 180 HSVADLAQHECLGFVEPLRLN----RWPVAQENGELYDINPGMSSNSGETIKQLCLDDNG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L DY+V     +   V ++ D   P        Y   L  + +++AF +F+
Sbjct: 236 IACLSDYMVDQDIADGTFVELLADQRLPVEMPFNAVYYSDLGVSQRVRAFIDFL 289


>gi|167563227|ref|ZP_02356143.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167570408|ref|ZP_02363282.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 300

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 136/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LR++     G+  +   +  F   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L +HN +    L     +   W    D  +   R+S  ++ +    + ++C+ G G
Sbjct: 180 TLADLARHNCLA---LAANANQQRGWAFVDDGKVVSIRVSGTMECSDGAVLHEWCLDGHG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGADIAGSRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|224826641|ref|ZP_03699742.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224601242|gb|EEG07424.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 306

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L +F  V   GS   A E+L LS + ISR++  LE  +G++L  R  R   LT +G 
Sbjct: 4   LSDLHIFCAVVEQGSLVKAGERLRLSSAVISRRLINLEARLGVRLLQRTTRRQALTPEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    V  +L  T+  L     +PSG L++  +   G+  L  +L  FL  YP +++
Sbjct: 64  LYYQRGRAVLDELAETEALLMARQHQPSGVLKVTASASFGRQHLAPHLPAFLERYPQLEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L +  +D+     D AIR+ +P     L+ R L        AAP YL    EP    
Sbjct: 124 HLLLTDAVLDLVDGGLDLAIRIGQP-DKPGLVARPLCVNRRILCAAPGYLDRQGEPRHPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +   ++  +       L     P        L  N   ++ + C+ G GIA+ 
Sbjct: 183 ELARHNCLLLDEVGTRSQVWS--LDGPQGPTEVEVRGNLVSNLGDAVGEACLAGGGIAIR 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             + V D      + +++     P+  V   YP     + K++   +F+  
Sbjct: 241 STWAVSDALRAGRVRQVLPGYALPAQEVLAIYPSRRHLSPKVRVLIDFLLQ 291


>gi|169796303|ref|YP_001714096.1| putative transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213156961|ref|YP_002319006.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483762|ref|YP_002325987.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301347605|ref|ZP_07228346.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301512809|ref|ZP_07238046.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301596934|ref|ZP_07241942.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332851615|ref|ZP_08433564.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332866504|ref|ZP_08437046.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149230|emb|CAM87112.1| putative transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213056121|gb|ACJ41023.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213987410|gb|ACJ57709.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332729843|gb|EGJ61177.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332734583|gb|EGJ65692.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 311

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G 
Sbjct: 10  LNEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I I
Sbjct: 70  QVYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    
Sbjct: 130 QMLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGTPNHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I  G+        F      ++ I          N     +   +   GIA L
Sbjct: 189 DLKQHECIYLGEQASDSKWKFQ---QGNKSISVAVRGRYAANHTGVRLSAALQHFGIASL 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++ +       LV+++ D    ++    ++  YP       KL     ++  K 
Sbjct: 246 PYFVARHALQQGTLVQVLPDWYFKTYYSGGLWLLYPPTRHVPPKLSVLIQYLADKL 301


>gi|260555363|ref|ZP_05827584.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           19606]
 gi|260411905|gb|EEX05202.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           19606]
          Length = 306

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 136/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L++F  +   GSF+ AA+QL++ +++ S  I  LE+ +  +L  R  R +  + 
Sbjct: 1   MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   ++   +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPD
Sbjct: 61  DGQAFYERCTQRLSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P 
Sbjct: 121 IELVISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKHGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + F          F  L    +       S + VN   + +   + G+G+
Sbjct: 180 QPEDLLSHYCVNFFSTSGGRNYPFE-LMVNGKKQDYFLKSWIAVNDAENYVLSALQGAGL 238

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V +      LV ++ +  +P  +V   YP+  + + +++ F  ++  
Sbjct: 239 IQVPHYHVANELKNERLVEVLSEWESPKMSVSALYPQHRQLSPRVRVFVAWLSE 292


>gi|74317134|ref|YP_314874.1| LysR family transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056629|gb|AAZ97069.1| transcriptional regulatory protein, LysR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 316

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 141/292 (48%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  V  +GS T AAE+++L++S++SR+++ LE  +G+ L  R  R L LTE
Sbjct: 1   MDRLAHMQMFVAVVEAGSITAAAERMNLAKSAVSRRLAELEAGLGVSLIQRTTRRLNLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   +E  + E+ +      G+L++A     G   L   ++ F+  +PD
Sbjct: 61  SGRTYYARCVAILADVEDAEAEVSQGHGALRGRLKVALPQAFGLLHLAPLIQTFMKRHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L  +++ +D+  +  D AIR+   +  S+LI R+L  I     A+P YL     P 
Sbjct: 121 VRLELDFNDRQVDLMQEGFDLAIRIA-TLADSTLIARRLAAIPHRVVASPGYLARRGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H+ + + ++    +  +++      P     +  L  +S   ++Q  +   G+
Sbjct: 180 AAADLTQHDCLAYSNVRDPGL--WSYRDPGGEPGQVRVVVRLAASSGEFLLQAAIADEGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LLP + +     +  L  ++ D   P    Y  YP     + +  AF +F+
Sbjct: 238 VLLPAFYLHAALRSGQLSEVLADHRWPEPAAYAVYPPTRHLSARAHAFIDFL 289


>gi|50121309|ref|YP_050476.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611835|emb|CAG75284.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 310

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 134/293 (45%), Gaps = 6/293 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             +  F  V ++GSF  A E    S+ ++SRQ+  LE  +G++L +R  R ++LT +G  
Sbjct: 2   QAMTTFVAVVKAGSFVKAMESTGFSKPAVSRQVIELEKFLGVRLLHRTTRRISLTSEGET 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   EV   +E  + ++   + +  G+LRI    D G   L     +F+   P +++ 
Sbjct: 62  YYQRCKEVLSVIEEAENQVCARANQAHGRLRIGVPQDFGVLQLTPLWAQFMDRNPKVELD 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++L ++++D   +  D  +R+   +  S+L+   L T  +   A+P YL+    P    +
Sbjct: 122 IVLSDRNVDPVEEGYDLVVRIGN-LPDSTLVSSLLATTRLILCASPEYLRLRGTPTHPTD 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           LDKH +I +         ++ +       I       L VNS  +     +   GI L P
Sbjct: 181 LDKHVVIAYS--YNASGNEWLFCKEKREQIKVSTHPRLNVNSGATCRLLAIESQGIILQP 238

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           D++V  +     LV I+ +    +  ++  YP  +    K++  R+F+    R
Sbjct: 239 DFLVHSDIIKGKLVEIIPEWQAQTLEIHALYPTRILLPLKVQLLRDFLSDSLR 291


>gi|308185770|ref|YP_003929901.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1]
 gi|308056280|gb|ADO08452.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1]
          Length = 300

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 138/304 (45%), Gaps = 11/304 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGSF+ AAEQL ++ S++SR I  LE ++GI L  R  R L LT
Sbjct: 1   MKASSDELKVFVSVVESGSFSRAAEQLQMANSAVSRTIKKLENKLGIALLTRTTRQLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +  R       ++ T + +L ES  +P G LR+     +  +LL   +K F   YP
Sbjct: 61  QEGERYFRHVQRFLQEMTTAESDLIESLHEPKGLLRVDAATPVILHLLMPMVKPFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + LI     I++     D AIR    +  S+L  R L        A+P YL+    P
Sbjct: 121 GVTLSLISSESFINLIERKVDIAIRAGN-LTDSTLRARLLFNSFRRVVASPAYLREHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +LD H  + F +          W    +          +  NS  +I Q C+ G+G
Sbjct: 180 QKVTDLDNHACLGFEESPRLN----RWPIARESGELYDIDWAISSNSGETIKQLCLTGNG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL--KA 294
           IA L DY++        LV ++ D   P        Y   +  + +++AF +F+      
Sbjct: 236 IACLSDYMIDREVAEGTLVEVLADQRLPVEMPFNAVYYSDIGVSQRVRAFIDFLSEWTAE 295

Query: 295 RDWK 298
           + W+
Sbjct: 296 QPWR 299


>gi|167580021|ref|ZP_02372895.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 294

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 136/287 (47%), Gaps = 7/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++         +   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLP--ALSAPVLPVLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  KP + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGKP-RDSRLSARQLGTFAQVVVGSPDYFARQGAPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +           EP  S +  N+  + + + + G G+A +PD+ V
Sbjct: 186 TCLLYRFPTTGKLERWPLRPASGDADVEPPQS-MICNNVETRVCFAIRGRGLACVPDFAV 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++   +  L  +++  I      Y  +P     + KL+AF +FI  +
Sbjct: 245 REELASGRLRTVLDAYIERPQAFYVLWPSGRHASPKLRAFVDFIVGR 291


>gi|251790047|ref|YP_003004768.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538668|gb|ACT07289.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 300

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 138/288 (47%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L+LT +G + +
Sbjct: 7   MTCFVRTAETGSFSAAGRDLGLGQPNVSRHVATLEEHLQTRLLHRSTRKLSLTPEGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E ++   +E +V P+G LR+A    L    L  ++ +FL  YP++ ++L 
Sbjct: 67  LEARRILEAVEESESSFRE-NVTPTGLLRVACPTALAHTFLVPHIPDFLERYPELTLELQ 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ I++  + A+ AIR+   ++ S++  R+L        A+  YL     P + ++L 
Sbjct: 126 INDRYINLVDEGAELAIRIGH-LEDSAMRARRLGMYERVCVASNKYLAKRGTPNTPEDLK 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KH+ + +  L       F       + I  P    L+VNS  ++ ++   G GIA  P++
Sbjct: 185 KHDCLIYTLLTTGATWRF-------QDINVPISGRLRVNSPEAVQKFVNAGVGIAQGPEW 237

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + ++   N NL  ++ D   P   +   Y        +   F +F+  
Sbjct: 238 LFEEGLANGNLQLLLTDYTAPPVPIQAVYVANRLLPKRAIVFMDFVAE 285


>gi|323529427|ref|YP_004231579.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323386429|gb|ADX58519.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 307

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 139/297 (46%), Gaps = 7/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LRVF  VAR  SF+ AAE L +S + +S++I+ LET +G +L +R  R + +TE G
Sbjct: 8   DLGDLRVFCEVARKASFSAAAESLSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++    ++   ++    ++  +   P GKLRI+++   G+  +   L  F   YP + 
Sbjct: 68  ERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQLS 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I +  LI R+L + H    A+P YL     P  +
Sbjct: 128 VRLDLFDRLVDVAGEGFDLDIRIGDDI-APHLIARRLASNHRVLCASPDYLARHGAPRQL 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +   +           L              L  N     +Q+ + G GI L
Sbjct: 187 ADLSSHACLAIKERDHPFGLWR--LTVRGEAASIKVTGPLSTNHGEVAVQWALAGRGIVL 244

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              + V+   D+  L +++ +   P+  ++  YP  L  + K++   +F+  +   W
Sbjct: 245 RSMWDVRPLLDSGQLQQVLPEATQPA-NLWAVYPARLAQSAKVRVCVDFLSEEFAQW 300


>gi|227823451|ref|YP_002827424.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227342453|gb|ACP26671.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 297

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 142/292 (48%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G  L  R  R  +LTE
Sbjct: 1   MDTLTRIRAFIDVVDAEGFSAAARRVGKSKALLSKYVRELEDELGALLLNRTTRQFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  SE+  +++     ++ ++    G+LRI          +  +L +F   +P+
Sbjct: 61  AGHTYYRSASEILKEIDNLADLVRANNSDLRGRLRITVPRTFVDAEIGQSLIDFGRQHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++ D++ +D+  +  D A+R+ + ++ S+LI RKL    +   A+P +L+      
Sbjct: 121 LSLEIVSDDRFVDLVEEGFDVAVRITR-LEDSTLIARKLDDFQVLLCASPGFLEKVGPLT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL K   I   D   +   ++ ++     P   P    ++VNS L+ ++  V G G+
Sbjct: 180 HPSELSKIPCIL--DTNGRSYSNWRFIEPDGSPFSVPVSGPMEVNSPLASVRAAVTGMGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +PD+I +    +  LV + +D +     +Y  YP       K++ F +F+
Sbjct: 238 APVPDFIARPKIQSGELVTLFDDYLPRDRGIYAIYPHRRYLPTKVRTFVDFL 289


>gi|170699349|ref|ZP_02890396.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135721|gb|EDT04002.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 330

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 145/295 (49%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE G
Sbjct: 29  NLDDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRMTVTEAG 88

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + 
Sbjct: 89  ERVFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPTLLDFSARYPQLN 148

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I    LI R+L T H    A+P YL     P ++
Sbjct: 149 VRLDLFDRLVDVAGEGYDLDVRIGDEIAD-HLIARRLATNHRVLCASPDYLARRGTPRTL 207

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+ +   +   +      W   V       ++   L  N     +Q+ + G GI 
Sbjct: 208 ADLASHDCLAIKE---RDHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQWALAGRGIV 264

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L   +      +   L R++ D I P+  ++  YPE +  + K++   +F+    
Sbjct: 265 LRSIWEAAPLIERGELCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFLVEAL 318


>gi|299770963|ref|YP_003732989.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298701051|gb|ADI91616.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 306

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 140/294 (47%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + L  F ++ + GS    A +L+L+  ++SR+++ LE  +G++L  R  R ++LT
Sbjct: 1   MNADTE-LAFFCLLVKQGSLVATARELNLTPPAVSRRLTQLEERLGVRLLNRTTRRISLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G         +  +++  +  +  S   P G LR+   +  G++ +   +  F  +YP
Sbjct: 60  SEGEVYFENAVRILKEIDEMERLVSSSRAAPKGVLRVNAPLGFGRSYIAPAISTFAKIYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ +QL L ++ I++  +  D +IR  + I  S LI +KL        A+P YLK   +P
Sbjct: 120 DVDVQLHLTDRPINLPDEAIDVSIRFGE-IPDSRLIAKKLAANRRLLCASPSYLKMAGQP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           L+  +L +H  I             NW  +  + +   ++   L  N     + + + G 
Sbjct: 179 LTPHDLTQHQCIVIRQNDSAYG---NWRLSHGKQVETVKVHGQLSTNDGAVALNWALEGY 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  ++ V     +  LV+++ED  TP   VY  Y E L  + K+  F + +
Sbjct: 236 GILMRAEWDVAKYLRSGRLVQVLEDYETPPADVYAVYLERLNLSPKVAHFLDHL 289


>gi|218549989|ref|YP_002383780.1| LysR family transcriptional regulator [Escherichia fergusonii ATCC
           35469]
 gi|218357530|emb|CAQ90169.1| putative transcriptional regulator, lysR family [Escherichia
           fergusonii ATCC 35469]
          Length = 297

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  I  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANALPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W    +      R+   L  N     +   + G GIA
Sbjct: 185 YELQNHQCINM--RLPTAGGIYHWEFEREGKPLRVRVDGQLTFNLLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 293


>gi|115359722|ref|YP_776860.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285010|gb|ABI90526.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 307

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 145/295 (49%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE G
Sbjct: 6   NLDDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + 
Sbjct: 66  ERVFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I    LI R+L T H    A+P YL     P ++
Sbjct: 126 VRLDLFDRLVDVAGEGYDLDVRIGDEIAD-HLIARRLATNHRVLCASPDYLARRGTPRTL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+ +   +   +      W   V       ++   L  N     +Q+ + G GI 
Sbjct: 185 ADLASHDCLAIKE---RDHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQWALAGRGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L   +      +   L R++ D I P+  ++  YPE +  + K++   +F+    
Sbjct: 242 LRSIWEAAPLIERGELCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFLVEAL 295


>gi|116050478|ref|YP_790703.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218891487|ref|YP_002440354.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254240965|ref|ZP_04934287.1| hypothetical protein PA2G_01645 [Pseudomonas aeruginosa 2192]
 gi|115585699|gb|ABJ11714.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126194343|gb|EAZ58406.1| hypothetical protein PA2G_01645 [Pseudomonas aeruginosa 2192]
 gi|218771713|emb|CAW27487.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 303

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 141/295 (47%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F  +   G+F  AA+ L L ++S+++ I  LE  +G++L  R  R ++LT 
Sbjct: 1   MDRFQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +         P G+LR+     LG+  +   L EF   YP+
Sbjct: 61  DGQAYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL  +++ +D+  + ADC +R+ + +  SSL+ R L  +     A+  YL+    P 
Sbjct: 121 LELQLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
            + EL  H  + +    P     F++  +VD  +   P  S + VN+  + +  C  G G
Sbjct: 180 QLAELGGHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P Y V     + +L +++ + + PS  ++  YP   + + +++ F +++  
Sbjct: 238 LIQAPHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWLVE 292


>gi|209550674|ref|YP_002282591.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536430|gb|ACI56365.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 303

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +G+FT AA+ L + +++++  I GLE  +  KL  R  R + +T 
Sbjct: 1   MDQLSAMRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   +++  +LE     L  S   PSG+LR+         ++   L +F   YPD
Sbjct: 61  DGALYYERAAQIISELEELDGSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L + ++ +D   +  DCA+R   P    SLI R++  + M   A+P+Y++    P 
Sbjct: 121 IRIDLGVGDRTVDYLAENVDCALRGGTP-ADQSLIARRVSEVEMITCASPNYIQKFGMPE 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L   H  + +          F +    +     PR     VN   + +   + G G
Sbjct: 180 RPEDLEADHYSVNYFRAQNNRTLPFEFRRHNEVIETSPRYIA-SVNDSRTYLTAALTGLG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           IA +P ++ ++      LVR++ D       +Y  YP     + K++ F +++ 
Sbjct: 239 IAQVPIFMAREPMAKGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWLV 292


>gi|330876238|gb|EGH10387.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 301

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FLAMRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  ++   EV   +  ++   +++  +P+G LRI   +  G  LL   L  F   +P
Sbjct: 60  EFGTAYYQRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L+L N+ +D+  +  D AIRL    QSS LI R L    +   AAP YL     P
Sbjct: 120 DVKLDLVLTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAAPDYLARHSAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
              ++L  HN + F                +  P GE  +     +  N+   + Q    
Sbjct: 180 TRPEDLRAHNCLAFAYPAGDEWRTAGTQWRMTGPEGEVLVDVDGSMVANTSAGLYQAARA 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+    +  LV ++ +   P   +   Y +      KL++F  F
Sbjct: 240 GMGVVMLPDALVQRDLQDGRLVALLPEYHLPRRPMNLLYVQDRYRLPKLRSFVEF 294


>gi|300715483|ref|YP_003740286.1| transcriptional regulator, LysR-type [Erwinia billingiae Eb661]
 gi|299061319|emb|CAX58428.1| Transcriptional regulator, LysR-type [Erwinia billingiae Eb661]
          Length = 303

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 133/288 (46%), Gaps = 6/288 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V  +GSFT AA++L  S    S+ IS LE  +G++LF R  R L  T+ G   + 
Sbjct: 8   RMFIAVMETGSFTAAAQRLGTSHGQASKLISRLEQHLGVQLFRRSTRALAATDVGRAYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +     ++ SS  P+GK+RI+  +  G   L  +L +F   YP I++ +  
Sbjct: 68  KIRVLLADYDALNDSVRNSSDAPAGKVRISAPVTFGTTQLTPHLIDFARRYPGIELDVSF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++  +  D A+R+ K +  SSL+ RKL  I +   A+P YL     P   + L  
Sbjct: 128 ADRAVNVVDEGFDLALRIGK-LADSSLMARKLCDIRIITVASPGYLAERGTPEHWEALAS 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H+ I   D   +    + +        G+P    L+ ++    ++  + G GIA LP ++
Sbjct: 187 HDCII--DTNFRDPWRWPFQDEKLALQGQPVNGRLKFSNAEVCLKAAIAGLGIARLPSFV 244

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +   N  +V ++         ++  YP A     K + F +++   
Sbjct: 245 AGEALKNKEVVPVLAASEIVPLGLFALYPPAKYLAHKSRTFIDYLVEA 292


>gi|270265239|ref|ZP_06193501.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270040873|gb|EFA13975.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 297

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 138/292 (47%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A   SF  A E+L +S S++ + ++ LE  +G++LF R  R + LT+
Sbjct: 1   MDSLSGLLAFVRAAELRSFVAAGERLGVSASAVGKSVARLEESLGVRLFNRSTRRINLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  ++E  + E+   S  P GKLR++    +G  +L   L +F  LYP+
Sbjct: 61  EGALFFERCQRIVSEIENAEAEMARISDAPRGKLRVSMP-AIGYRMLVPLLADFSALYPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +  +++ +D+  +  D A+R  + +  S L+ R+L    +    AP YL+    P 
Sbjct: 120 VELDVDFNDRMVDLIAEGIDVAVRSGE-LADSRLMARRLGPFRLILAGAPEYLQRRGVPQ 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  + +     + ++++  L +   P+ +     L  NS  +++     G GI
Sbjct: 179 GPEDLLEHACLRYRYPGGQQLQEWR-LFSDGEPVSQRIPVTLSCNSIEALIHATQEGLGI 237

Query: 242 ALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LPD+      +   LV +++            +P +     K++ F +++
Sbjct: 238 AYLPDFTLCSAINAGQLVAVLDQHTQEQGFFSALWPSSRHMLPKVRVFVDYL 289


>gi|145297998|ref|YP_001140839.1| LysR family transcriptional activator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850770|gb|ABO89091.1| LysR-family transcriptional activator [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 290

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 144/296 (48%), Gaps = 14/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + + +F  V   GSFT AAE L + +SS+S++IS LET++G++L  R  R L+LT 
Sbjct: 3   NVDLELMGLFATVVEQGSFTGAAEALGMPKSSVSQKISRLETQLGVRLLQRTTRRLSLTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG         +     +  + +      P+G++RI      G  LL   L EF  LYP+
Sbjct: 63  QGEIYVEQCQALLALARSANLAMARLRAAPAGRVRITAPEATGTLLLGRILAEFRALYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L +  +D+  +  D A+R   P++ SSLI R++  +  H  AAP YL     P 
Sbjct: 123 VVLELTLCDDQLDLVGEGYDLALR-AAPLKDSSLICRRIGQVPRHLVAAPGYLAAHGAPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + EL  H  +    L    +++  W          P+ +C+  NS L++ +  +   GI
Sbjct: 182 QLSELGLHPCLVHSALPVWPLQEGGWR---------PQGACI-SNSLLALRELALHEGGI 231

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP ++ +++     L +++ D   P    Y  YP        L++  +F+  + 
Sbjct: 232 ALLPHHVCQEDLATGRLQKLLPDHPIPPNPFYLIYPSREHLAPALRSLMDFVAERL 287


>gi|300702499|ref|YP_003744099.1| transcriptional regulator protein, lysr family (aaer) [Ralstonia
           solanacearum CFBP2957]
 gi|299070160|emb|CBJ41451.1| putative transcription regulator protein, LysR family (aaeR)
           [Ralstonia solanacearum CFBP2957]
          Length = 298

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 129/295 (43%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +G+FT AA QL +S   + + +  LET +G +L  R  R  +LT+
Sbjct: 1   MDKLRGMETFVAVVDTGNFTEAAVQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  ++   +  ++    +PSG LR++     G  ++      F   +P 
Sbjct: 61  AGRVFYDDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+ +D++ +  D A+R+  P+  + L+ + L    M   A+P YL    +P 
Sbjct: 121 VRVELDLSNRMVDLADEGFDLAVRIG-PLGDADLVAKPLCAYRMAICASPDYLTRHGQPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  ++    +     +   L+  D P           N    +    + G+G+
Sbjct: 180 TPADLPAHRCLSH---MVWNRRNAWQLSGWDGPTPWRDDPAFSCNDGHGLQMAAIAGAGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L P+ +V ++     LVR+++        ++  Y +  +   KL  F + +  +
Sbjct: 237 LLQPEVLVAEDLASGRLVRVLQPYAPEPRPIHLVYRQDRRPLPKLTGFVDHLLQQ 291


>gi|308188569|ref|YP_003932700.1| HTH-type transcriptional activator aaeR [Pantoea vagans C9-1]
 gi|308059079|gb|ADO11251.1| HTH-type transcriptional activator aaeR [Pantoea vagans C9-1]
          Length = 299

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  GSFT AAE L + + S+SRQI  LE ++  +L +R  R + LT+
Sbjct: 1   MDKIHAMQVFVRVAEMGSFTRAAESLGIPKGSVSRQIQALENQMATRLLHRTTRRVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   ++      Q      SGKLR+  ++ +    +   L EFL  YP 
Sbjct: 61  DGLVYYDRCLDLLSMIDDMDSLFQHEPASLSGKLRVDMSVAMATGFILPRLPEFLQHYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L   ++ +D+  +  DC IR+ + ++ S LI RK+ T  +   A+P YL     P+
Sbjct: 121 VEIELSSSDRQVDVIREGFDCVIRVGE-LKDSGLIARKIGTHTLINCASPGYLSRFGMPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL +H ++ +   + +    F +               + VNS  +    C+ G GI
Sbjct: 180 RLEELSQHAMVHYSQQLGQASPGFEYFDGRQCHYVHTG-GVVTVNSTETYRAACLAGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   ++   +   LV ++         ++  YP       +++ F  ++    +++
Sbjct: 239 IQVPAAGIQTLLERGELVEVLHRFPARPMPIHLLYPHRRNVARRVRVFMEWLSQVLQEY 297


>gi|172062159|ref|YP_001809810.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994676|gb|ACB65594.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 330

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 145/295 (49%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE G
Sbjct: 29  NLDDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTEAG 88

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + 
Sbjct: 89  ERVFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLN 148

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I    LI R+L T H    A+P YL     P ++
Sbjct: 149 VRLDLFDRLVDVAGEGYDLDVRIGDEIAD-HLIARRLATNHRVLCASPDYLARRGTPRTL 207

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+ +   +   +      W   V       ++   L  N     +Q+ + G GI 
Sbjct: 208 ADLASHDCLAIKE---RDHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQWALAGRGIV 264

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L   +      +   L R++ D I P+  ++  YPE +  + K++   +F+    
Sbjct: 265 LRSIWEAAPLIERGELCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFLVEAL 318


>gi|331661668|ref|ZP_08362591.1| LysR-family transcriptional regulator [Escherichia coli TA143]
 gi|331060090|gb|EGI32054.1| LysR-family transcriptional regulator [Escherichia coli TA143]
          Length = 297

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 293


>gi|238020448|ref|ZP_04600874.1| hypothetical protein GCWU000324_00330 [Kingella oralis ATCC 51147]
 gi|237867428|gb|EEP68434.1| hypothetical protein GCWU000324_00330 [Kingella oralis ATCC 51147]
          Length = 294

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 134/291 (46%), Gaps = 11/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V +SGSFT AAE+L++S    S+ +S LE  +G +L YR+ R L LTEQG   +
Sbjct: 7   MKVFCQVVQSGSFTRAAERLNISIPMASKHVSHLEKTIGAQLLYRNNRSLKLTEQGDAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R        L          +  P G LRIA  +    +     L  +   YPD++I+L 
Sbjct: 67  RDCQSALELLAQAAEHASAGANHPQGTLRIAAPVWFACDKFARMLAAYQSRYPDVEIELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D++ D  D A+RL   + + ++I ++L  I  +  A P YL     P + Q+L 
Sbjct: 127 LSNRHVDLNSDGEDLALRLSDSL-AENIIAKRLGNIPFYLVATPTYLARHGTPRAPQDLT 185

Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H  I  T+ DL     E       ++        S ++ N    +        GI  +P
Sbjct: 186 RHPAILPTYVDLSRMMTEYQGKTVPLEFQG-----SKMRSNHTQMVAALIRAHVGIGYMP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++  D+     L+R++ D    S   Y  Y        K+++F +F+  +
Sbjct: 241 AWLADDDITTGRLIRLLPDCPMSSPPFYAVYANRQYMKAKVRSFIDFMSEQ 291


>gi|193077028|gb|ABO11781.2| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           17978]
          Length = 301

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 150/293 (51%), Gaps = 5/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEDQLGVALFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGALFYEHSRRALSEIQNAAALLDQRKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++++D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRNVDLIEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNKAGPV 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++LD+H  I   D     M+ +      D P+     + L +N   +I    + G+G
Sbjct: 181 EHIEDLDQHATI--ADPHFGQMQKWRLQKENDEPLFIKPKAKLLLNDLQAIKNAALAGAG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LPD++++    +  LV++++ + + +F ++  +P       K +   +++
Sbjct: 239 IAWLPDWLIQNELQDGKLVQVLDAMSSTAFPIHLVWPTLPFMPLKTRLAIDYL 291


>gi|330448657|ref|ZP_08312305.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492848|dbj|GAA06802.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 292

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 139/298 (46%), Gaps = 11/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D + +F  VA   SF  AAE   +  S++SR+IS LE  +G++L +R  R + LTE G
Sbjct: 3   SLDDMALFVEVANVMSFRQAAEITGVPNSTLSRRISALEKAIGLRLLHRTTRKIELTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +    +L + +  PSG +R++  ID   + +   L EF   YP+I+
Sbjct: 63  QLYYERCRRIVEEAKLAHQQLSDIAENPSGTVRVSAPIDFATHFIAPLLPEFTKQYPEIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  L ++ +D++ +Y D AIR  +  +SS+LI RKL   H + Y +P YL    EP S 
Sbjct: 123 LEFDLSSRRVDMTSEYFDVAIRAGES-ESSNLIARKLANFHHYIYGSPAYLAQYGEPQSP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H   +              L + ++       S L VNS   I Q  +L  G+ L
Sbjct: 182 DELTQHQCFSIVKSAHWA------LHSQEKSADIKVNSKLFVNSIGMIKQLTLLNMGLGL 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LP  ++ D      L RI+ +       +Y    E      K + F NFI  +    +
Sbjct: 236 LPQEMITDELAQGTLKRILPEWQGAPVPIYAIT-ETRLLPAKTRCFINFIQQQLEQRR 292


>gi|167583711|ref|ZP_02376099.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 307

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 141/295 (47%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE G
Sbjct: 6   NLDDLRVFSVVVRLTSFSAAAEQLGVSPAYVSKRVAQLEAQLGTRLLHRSTRRVAVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G++++   L  F   YP + 
Sbjct: 66  ERVLARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLAFTERYPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I    LI R+L + H    A+P YL     P ++
Sbjct: 126 VRLDLFDRLVDVAGEGFDLDIRIGDEIAD-HLIARRLASNHRVLCASPAYLARRGTPRTL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  +   +   +      W   V       ++   L  N     +Q+ + G GI 
Sbjct: 185 ADLSSHECLAIKE---RDHPLGVWRMNVRGETQTVKVGGALSTNHGEVAVQWALAGRGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L   +          L R++ D   P+  V+  YPE +  + K++   +F+  + 
Sbjct: 242 LRSIWEAGPLIARGALCRVLPDATQPA-NVWAVYPERVATSAKVRVCVDFLADEL 295


>gi|17546448|ref|NP_519850.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428746|emb|CAD15431.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 306

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 130/297 (43%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT
Sbjct: 1   MSNPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G      + ++   +E  Q   ++S     G+LR+     + + ++   L  FL  +P
Sbjct: 61  QDGQAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPAGVARKVVIPALPAFLDAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L   ++ +D+  +  DC +R+   +  SSLI R L  +     A+P Y+     P
Sbjct: 121 QLEIELSSTDRRVDLVREGFDCVLRIG-TLGDSSLIARPLGQLPQMNCASPAYIARYGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +LD H L+ +   +      + +     R    P    + V++  S    C  G G
Sbjct: 180 RSLDDLDHHRLVHYVQTLGTKAPGWEYRID-GRTAHRPMPGVVTVSTAESYEAACQAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   P  ++        LV ++         V   YP       +++ F +++  + 
Sbjct: 239 IIQAPVSVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWVAEQL 295


>gi|148547927|ref|YP_001268029.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511985|gb|ABQ78845.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 292

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D +R+F  V   GSF+  A +L++ Q ++S+Q+  LE  +G  +F R  R L LT
Sbjct: 1   MDL-FDSMRIFVRVVERGSFSAVARELNMGQPAVSKQVRALEQYLGGAVFARSTRHLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +QG + +    E+  +LE           + +G LRIA  +  G+  +   +  FL  +P
Sbjct: 60  DQGQRFYSHCQEILSQLEHATRSFASGQEQIAGPLRIAAPVSYGRLCIAPLIGAFLQRHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +QI L L++ + D+ ++  D AIR+   ++S  L+   L T     YAAP YL+    P
Sbjct: 120 YVQIDLRLNDYNEDLLVENIDLAIRIG-VVKSEGLVAVPLGTSTRRVYAAPAYLERHGRP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  HN I F  L       F         +       +  N+  +I +  + G G
Sbjct: 179 REPAELAGHNCIAFTLLEHYDRWHFT---HRGEALEVAIKGNVTSNNSEAIREMVLGGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I+L P ++     +  ++  ++++  T +  V   +    + + +  AF +F+  
Sbjct: 236 ISLSPHWLFAADFEQGSVCSLLDEYQTTALPVSAVFSRERRRSARTMAFIDFLRE 290


>gi|215485408|ref|YP_002327839.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215263480|emb|CAS07806.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 297

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  I  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAIKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLACSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 293


>gi|187924230|ref|YP_001895872.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715424|gb|ACD16648.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 309

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 89/300 (29%), Positives = 136/300 (45%), Gaps = 12/300 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +   GSF  A E L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERMLNGMGVLTAIVDCGSFAAAGEALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +     +   LE       + +    G+LR+       + +L   L  F+ 
Sbjct: 61  TLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFID 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+Q++LI  ++  D+  D  D AIR   P   S+LI RKL+   +   AAP YLK  
Sbjct: 121 KHPDLQLELITRDQLGDLVGDGFDLAIRFGDP-PVSTLIARKLLDTRILTVAAPSYLKKH 179

Query: 178 REPLSIQELDK--HNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQY 234
             P +  EL+   H  I F D  P     F+W     R  I       L VN   ++   
Sbjct: 180 GHPTTPAELENGKHVCIKFRD--PLTGYPFSWEFHRGRKKISIAPQGRLTVNDVGTLHSV 237

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           C  G G+A +     +    +  LV +  D     + +Y  YP       K++AF +FI 
Sbjct: 238 CTAGQGVAQILSLGTESLMASGKLVELFPDWGDEVYPLYALYPSRHHPPAKVRAFYDFIV 297


>gi|153011562|ref|YP_001372776.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151563450|gb|ABS16947.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 297

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 140/292 (47%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE
Sbjct: 1   MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +PD
Sbjct: 61  AGHTYYHRAVEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P 
Sbjct: 121 IVLDVRLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSILCGAPELISRVGKPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L     I   D   +   ++++  T    +  P    ++VNS ++     + G G 
Sbjct: 180 RPEDLADRPCII--DTNARSRNNWHFRNTDGSMMTVPVNGPIEVNSPVATKNAALAGLGF 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP +I ++      LV  +++ I     +Y  YP       K++A  +F+
Sbjct: 238 CMLPAFIAEEEIERGRLVACLDEFIVKDGGIYAVYPHRRYLPAKIRALVDFL 289


>gi|256556958|gb|ACU83580.1| transcriptional regulator [uncultured bacterium HF130_AEPn_2]
          Length = 336

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 140/297 (47%), Gaps = 8/297 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D    + VF  VA + SFT A   L +S S++ + I+ +E  +G++LF+R  R +TLT
Sbjct: 22  TMDSLGSMSVFVQVAETRSFTQAGRLLGVSSSAVGKSIARMEQRLGVRLFHRSTRSITLT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+     +  +  ++E  + EL E++  P GKLRI+      + LL   L EF+  YP
Sbjct: 82  AEGALFLERSRRILAEVEAAEQELTEAATTPRGKLRISLPQ--VRGLLMPVLTEFMRAYP 139

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ +   ++ +D+  +  D  +R  KP + S L  R L    +    AP Y      P
Sbjct: 140 EIELDVDFSDRMVDVIEEGFDAVVRTGKP-EDSRLSARLLGHYRLVLVGAPQYFALHGVP 198

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L+ H  +         +E +        P    R + L   +  S+      G G
Sbjct: 199 ACPTDLNHHACLRHKFCATGKLESWPLRHLPGEPEPVLR-APLVSTTIESLKHVVHEGLG 257

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LPD++V+   +   L R+++D +  S + +  +P +   + KL+ F + +  + 
Sbjct: 258 IACLPDFMVRVSVEQGRLQRVLDDYLEHSGSFWMLWPSSRHASAKLRVFIDHMSARL 314


>gi|238894238|ref|YP_002918972.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|262043102|ref|ZP_06016241.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330007501|ref|ZP_08305960.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|238546554|dbj|BAH62905.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259039553|gb|EEW40685.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535447|gb|EGF61917.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 301

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 132/296 (44%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L+ F  V  +GSFT AA+ L++  +++S+ I  LE  +G+ L  R  R +T+T 
Sbjct: 1   MDRFSALKAFTRVVEAGSFTRAADSLNMPNATLSKTIQQLEAHLGVSLLQRTTRRITVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     +   LE        +  KP G LRIA       ++L   L +F+  +PD
Sbjct: 61  EGREYYEKARCLLEDLEEIDASFNTARNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L + +K  D+     DCAIR   P++ S+LI RK+    +   A P YL+    P 
Sbjct: 121 IRIDLQVADKPADLISGNIDCAIR-GGPMEDSTLIARKIGEATLVTCATPGYLQRYGTPA 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           S  EL   H LI++  L P     F +  T      E +    L +N   + +     G 
Sbjct: 180 SPDELHHGHRLISY--LSPASGRAFPFRFTRHGVSTELKTEPHLGINESNAHIAAGEAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI     Y +K    +  LV I+       +  +  Y        +L+ F +++  
Sbjct: 238 GIVQTFTYSLKPALASGELVEILSAWRPAPYPFHVVYARHRHVPPRLRVFIDWLAA 293


>gi|107101981|ref|ZP_01365899.1| hypothetical protein PaerPA_01003028 [Pseudomonas aeruginosa PACS2]
          Length = 303

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 141/295 (47%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L+ F  +   G+F  AA+ L L ++S+++ I  LE  +G++L  R  R ++LT 
Sbjct: 1   MDRFQALQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +         P G+LR+     LG+  +   L EF   YP+
Sbjct: 61  DGQAYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL  +++ +D+  + ADC +R+ + +  SSL+ R L  +     A+  YL+    P 
Sbjct: 121 LELQLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
            + EL  H  + +    P     F++  +VD  +   P  S + VN+  + +  C  G G
Sbjct: 180 QLAELGGHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P Y V     + +L +++ + + PS  ++  YP   + + +++ F +++  
Sbjct: 238 LIQAPHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWLVE 292


>gi|293608761|ref|ZP_06691064.1| transcriptional regulator [Acinetobacter sp. SH024]
 gi|292829334|gb|EFF87696.1| transcriptional regulator [Acinetobacter sp. SH024]
          Length = 306

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 139/294 (47%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + L  F ++ + GS    A +L+L+  ++SR+++ LE  +G++L  R  R ++LT
Sbjct: 1   MNADTE-LAFFCLLVKQGSLVATARELNLTPPAVSRRLNQLEERLGVRLLNRTTRRISLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G         +  +++  +  +  S   P G LR+   +  G++ +   +  F  +YP
Sbjct: 60  SEGEVYFENAVRILKEIDEMERLVSSSRAAPKGVLRVNAPLGFGRSYIAPAISTFAKIYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ +QL L ++ I++  +  D +IR  + I  S LI +KL        A+P YLK   +P
Sbjct: 120 DVDVQLHLTDRPINLPDEAIDVSIRFGE-IPDSRLIAKKLAANRRLLCASPSYLKTAGQP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           L+  +L +H  I             NW  +  + +   ++   L  N     + + + G 
Sbjct: 179 LTPHDLTQHQCIVIRQNDSAYG---NWRLSHGKQVETVKVHGQLSTNDGAVALNWALEGY 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  ++ V     +  LV+++ D  TP   VY  Y E L  + K+  F + +
Sbjct: 236 GILMRAEWDVAKYLRSGRLVQVLADYETPPADVYAVYLERLNLSPKVAHFLDHL 289


>gi|307730425|ref|YP_003907649.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584960|gb|ADN58358.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 312

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 134/300 (44%), Gaps = 13/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YP+
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYRERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L L  +  D+  +  D A+ L   +  S L+ ++L +    A A+P YL+    P 
Sbjct: 121 VQVELTLAQRMPDLLDEGFDVALTLATGLPDSGLVSQRLGSAFSIACASPAYLEKHGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
           +  +L  H  +    ++        W  T D P GE  I    +  QVN   ++      
Sbjct: 181 TPSDLAHHTCL---QIVTPVFPPDKW--TFDGPNGEETITLGPATFQVNVAEAMAVAATS 235

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GI L+P Y          LV ++ +  +    +Y  YP       K++ +   +  + 
Sbjct: 236 GMGIGLIPLYSAISGLRKGELVWLLPEYTSQEMNLYALYPSRQYLDAKIRTWIEHLREEL 295


>gi|207723575|ref|YP_002253974.1| hypothetical protein RSMK00859 [Ralstonia solanacearum MolK2]
 gi|206588776|emb|CAQ35739.1| hypothetical protein RSMK00859 [Ralstonia solanacearum MolK2]
          Length = 306

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 133/300 (44%), Gaps = 5/300 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT
Sbjct: 1   MSNPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G      + ++   +E  Q   + S     G+LR+   + + + ++   L  FL  +P
Sbjct: 61  QDGQAFFERSQDLLADMEELQTMFRHSPQALRGRLRVDMPVGVARKIVIPALPAFLDAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L   ++ +D+  +  DC +R+   +  SSLI R L  +     A+P YL     P
Sbjct: 121 QLEIELSSTDRRVDLVREGFDCVLRIGA-LSDSSLIARPLGQLPQMNCASPAYLARYGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +LD+H L+ +   +   +  + ++    R    P    L V++  S    C  G G
Sbjct: 180 RSLDDLDQHRLVHYVQTLGTKVPGWEYVVD-GRAAYRPMQGVLTVSTAESYEAACQAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +   P   +        LV ++         V   YP       +++ F N++  +   +
Sbjct: 239 LIQAPVSGLAPQVARGELVDVLPQYRPAPMQVSLVYPNRRNLPVRVQVFMNWVAEQLAPY 298


>gi|307726353|ref|YP_003909566.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586878|gb|ADN60275.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 307

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 145/298 (48%), Gaps = 9/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LRVF  VAR  SF+ AAE L +S + +S++I+ LET +G +L +R  R + +TE G
Sbjct: 8   DLGDLRVFCEVARKASFSAAAESLQVSAAYVSKRINVLETTLGTRLLHRSTRRVAITEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++    ++   ++    ++  +   P GKLRI+++   G+  +   L  F   YP + 
Sbjct: 68  ERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQLS 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I +  LI R+L + H    A+P YL     P  +
Sbjct: 128 VRLDLFDRLVDVAGEGFDLDIRIGDEI-APHLIARRLASNHRVLCASPDYLARHGAPRQL 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL  H  +   +          W  TV       +++  L  N     +Q+ + G GI 
Sbjct: 187 AELSSHACLAIKERDHPFGL---WRLTVRGETASIKVTGPLSTNHGEVAVQWALAGRGIV 243

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L   + V+   ++  L +++ +V  P+  ++  YP  L  + K++   +F+  +   W
Sbjct: 244 LRSMWDVRPLLESGQLQQVLPEVTQPA-NLWAVYPARLAQSAKVRVCVDFLSEEFAQW 300


>gi|317053002|ref|YP_004119356.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953329|gb|ADU72800.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 297

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 129/295 (43%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L    +VAR  SFT AA +L +SQS++S  I GLE  +  +L  R  R +  TE G
Sbjct: 5   NFNDLIYLVMVAREQSFTRAAAKLGVSQSALSHSIRGLEERLNTRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +    +   +E   ++L +   KPSG +RI        + L   LK FL  YP++ 
Sbjct: 65  ERLIQNVGPMIADIEKALLQLSDEQGKPSGNIRITAGEHALSSTLWPLLKPFLQAYPEVN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +DN   DI     D  +RL + ++   +  R      M   AAP Y      P + 
Sbjct: 125 VELSVDNTLTDIVSGRFDAGVRLGEQVEKDMVAVRIGPDWRMVVVAAPEYFAQHGLPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  HN I     +P     ++W    D      ++   L  N+  S +   + G G+A
Sbjct: 185 YELQNHNCINM--RLPTLGGIYSWEFYKDGKEIRVKVEGQLIFNNLASRVDAALTGMGVA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +P+  V+   D   L   ++D   P    Y  YP   ++T         +  +A
Sbjct: 243 YVPEDCVRKYIDEGKLQIALDDWCAPFAGYYLYYPSRKQHTAAFSKLIEAVRYQA 297


>gi|238791596|ref|ZP_04635234.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238729212|gb|EEQ20728.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 300

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 136/288 (47%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L+LT +G + +
Sbjct: 7   MTCFVRTAETGSFSAAGRDLGLGQPNVSRHVATLEEHLQTRLLHRTTRKLSLTPEGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E ++   +E +V P+G LR+A    L    L  ++ +FL  YP++ + L 
Sbjct: 67  LEARRILEAVEESESSFRE-NVTPTGLLRVACPTALAHTFLVPHIPDFLERYPELTLDLQ 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ I++  + A+ AIR+   ++ S++  R+L        A+  YL     P + ++L 
Sbjct: 126 INDRYINLVDEGAELAIRIGH-LEDSAMRARRLGMFERVCVASNKYLAKHGTPNTPEDLK 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KH+ + +  L       F       + I  P    L+VNS  ++ ++   G GIA  P++
Sbjct: 185 KHDCLIYTLLTTGATWRF-------QDINVPVSGRLRVNSPEAVQKFVNAGIGIAQGPEW 237

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + +   +N NL  ++ D       +   Y        +   F +F+  
Sbjct: 238 LFEEGLENGNLQLLLTDYTASPVPIQAVYVANRLLPKRAIVFMDFVAE 285


>gi|254235529|ref|ZP_04928852.1| hypothetical protein PACG_01450 [Pseudomonas aeruginosa C3719]
 gi|126167460|gb|EAZ52971.1| hypothetical protein PACG_01450 [Pseudomonas aeruginosa C3719]
          Length = 303

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 142/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F  +   G+F  AA+ L L ++S+++ I  LE  +G++L  R  R ++LT 
Sbjct: 1   MDRFQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +         P G+LR+     LG+  +   L EF   YP+
Sbjct: 61  DGQAYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL  +++ +D+  + ADC +R+ + +  SSL+ R L  +     A+  YL+    P 
Sbjct: 121 LELQLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
            + EL +H  + +    P     F++  +VD  +   P  S + VN+  + +  C  G G
Sbjct: 180 QLAELGEHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P Y V     + +L +++ + + PS  ++  YP   + + +++ F +++  
Sbjct: 238 LIQAPHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWLVE 292


>gi|288936001|ref|YP_003440060.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890710|gb|ADC59028.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 301

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 131/296 (44%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L+ F  V  +GSFT AA+ L +  +++S+ I  LE  +G+ L  R  R +T+T 
Sbjct: 1   MDRFSALKAFTRVVEAGSFTRAADSLDMPNATLSKTIKQLEAHLGVSLLQRTTRRITVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     +   LE        +  KP G LRIA       ++L   L EF+  +PD
Sbjct: 61  EGREYYEKARCLLEDLEEIDASFNTAHNKPKGHLRIAIGGSTACDVLIPLLAEFMTAWPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L + +K  D+     DCAIR   P++ S+LI RK+    +   A P YL+ C  P 
Sbjct: 121 IRIDLQVADKPADLISGNIDCAIR-GGPMEDSTLIARKIGEATLVTCAPPGYLQRCGTPA 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           S  EL   H LI++  L P     F +  T      E +    L +N   + +     G 
Sbjct: 180 SPDELHHGHQLISY--LSPASGRAFPFRFTRHGVSTELKTEPHLGINESNAHIAAGEAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI     Y +K    +  LV I+       +  +  Y        +L+ F  ++  
Sbjct: 238 GIVQTFTYSLKPALASGKLVEILSAWRPAPYPFHVVYARHRHVPPRLRVFIEWLAA 293


>gi|119386961|ref|YP_918016.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377556|gb|ABL72320.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 298

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 124/294 (42%), Gaps = 6/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF  V   GS T     L +S +  S +I  LET  G++L  R  R L  TE G 
Sbjct: 4   LESLRVFVRVVELGSITAGGRDLRMSPAVASNRIKDLETRYGVRLLNRTTRKLVPTEVGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V   L+  +  +   S  P G LR+   + LG+ L+   + +F   YP +++
Sbjct: 64  AFYDNARRVIETLDEAEAVVSGFSGMPHGALRVTAPLGLGRRLIAPLVPKFCDEYPGVEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++++DI  D  D A  L +P Q S+L  R++        A P YL+    P   +
Sbjct: 124 RLRLSDRNVDIIADGIDLAFFLGEP-QDSALKWRRIAECRRVLVATPAYLEQHGRPERPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN +      P+  E +  L T + P           +    +  + + G GI   
Sbjct: 183 DLTAHNCLLL--RYPRSPEYYWVLQTPEGPQKMLVNGKFDADDGDVLSAWALGGRGIVNR 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P Y V ++     LV ++ +            P       K++ F +FI  + R
Sbjct: 241 PRYEVAEHLASGRLVEVLPEYPPTPSQFGVLTPHRRLQDPKVRLFADFIAREVR 294


>gi|149907849|ref|ZP_01896517.1| putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
 gi|149808855|gb|EDM68786.1| putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
          Length = 301

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 8/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +FY +   GSF+ AA+ + L++S +S+ I+ LE E+G++L +R  R LTLTE G  
Sbjct: 5   DDFLIFYHLIEQGSFSKAADIVGLTKSVVSKHITRLEKEMGVQLIFRTTRKLTLTEAGKV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +Y  ++     +       SG +R+      G+ +L   + +F + YPDI + 
Sbjct: 65  FFEHARTIYQSVQGAVDAMNGLGDSLSGSIRLTVPTVSGEIILAEAIADFSISYPDIHVH 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN  +D+  +  D AIR    +Q SS I R+LV       A+P YL N   P   Q+
Sbjct: 125 MDLDNSFVDLIDNNFDLAIRTGA-LQDSSYIARRLVQAQWVICASPAYLANNGTPKRPQD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L+K+N + +        E   WL          +IS     N+  ++ +  +   G+  +
Sbjct: 184 LEKYNCLAYSHQESGANE---WLFKGREADYSVKISGNFSTNNSAALRKAALFNLGLIYV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +V D+     LV ++   +  S  +Y  YP       K+K F   I+ 
Sbjct: 241 PKVLVADDLQAGTLVEVLPKQVAKSLGIYAIYPYTKLQPLKVKLFIEHIYQ 291


>gi|58040565|ref|YP_192529.1| transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58002979|gb|AAW61873.1| Transcriptional regulator [Gluconobacter oxydans 621H]
          Length = 303

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 137/293 (46%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++VF  V   GSF+ AA  L LSQ+ +++ I+ LE+ +GI LF+R  R L+LTE G 
Sbjct: 5   FTGMQVFAKVVAQGSFSGAARSLGLSQTMVTKHIAALESRLGISLFHRSTRKLSLTEPGR 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                + ++   LE  + E+   + +P G LR+   +      +   L EF   +P + +
Sbjct: 65  LFFIRSQKILTDLEEMEQEVSAENQEPRGLLRLNAPVSFAIRHVGPILPEFSRRHPLVTV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L LD++ ID   +  D  +R+ + + SS+L  R+L  +     AAP YL+    P S+ 
Sbjct: 125 ELGLDDRRIDPITEGWDLTLRIGR-MPSSALRSRRLAQVDFVVCAAPSYLEEYGTPRSVA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  + +   +   +    W    +     P    +  N+   + +  V G GI   
Sbjct: 184 DLPNHRCLGY--TLGDEISSARWSFGPNGERTVPVSGPMHANNGDILREAAVAGQGIIYQ 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK 293
           P +IV D   +  LV +  DV   +   ++  Y        K++A  +F+  +
Sbjct: 242 PTFIVSDELKSGRLVPLPLDVPVMTGPELHAVYAPTPHVPLKIRAMIDFLVER 294


>gi|224824023|ref|ZP_03697131.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603442|gb|EEG09617.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 305

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 140/295 (47%), Gaps = 12/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++ + GS T  A +L+L+  ++SR+++ LE  +G++L  R  R ++LT +G   
Sbjct: 4   ELAFFCLLVKQGSLTATARELNLTPPAVSRRLAQLEERLGVRLLNRTTRRISLTSEGEVY 63

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +  +++  +  +  S   P G LR+   +  G++ +   +  F   YPD+++QL
Sbjct: 64  FQNAMRILSEIDEMEQLVSSSRAAPKGHLRVNAPLGFGRSYIGPAISAFAKNYPDVEVQL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ + +  D  D +IR    I  S LI +K+        A+P+YL+    P +  +L
Sbjct: 124 LLTDRPVSLPDDAIDVSIRFGD-IPDSRLIAKKIAGNRRLLVASPNYLRAIGIPSNPHDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            KH  I             NW  +  +     +++  L  N     + + + G GI +  
Sbjct: 183 TKHQCIVLRQ---NEYAYGNWRLSRGKLTETIKVNGKLSTNDGEVALNWALEGHGILMRA 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           ++ V     +  LV+++ D  TPS  +Y  YPE L  + K+  F   +    RD+
Sbjct: 240 EWDVAKYLRSGRLVQVLADYDTPSADIYAVYPERLNLSAKVAYFVEHL----RDY 290


>gi|148825902|ref|YP_001290655.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae
           PittEE]
 gi|148716062|gb|ABQ98272.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae
           PittEE]
          Length = 305

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 139/293 (47%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  +  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKIIETQSFTLAAKQQNISVAMASKLVSQLEEYLKTRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     + + +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGMMYYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLEANGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----AMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +I+    +   L+ ++ +       ++  YP       K++AF  F+
Sbjct: 236 IANLPKFILGSAFEKGELIELLPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|170701385|ref|ZP_02892345.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133694|gb|EDT02062.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 345

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 140/291 (48%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSFT AAE+L + + ++SR +  LE ++  +LF R  R   LT +G +    
Sbjct: 35  AFVAVASEGSFTKAAERLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGRRFFEN 94

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +   ++     ++ E     P G +RI++ +  G+ ++   L++F   YPDI I L+L
Sbjct: 95  CHQGVAQIVEAMNDMLELRQGPPRGLIRISSAVGFGRKIVAPLLEKFAQAYPDIVIDLLL 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++ ID+  +  D + R  + I+ SS+I R+L+ + M   AAP Y+     P  I +LD+
Sbjct: 155 DDRPIDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVARHGLPQRIDDLDQ 213

Query: 189 HNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I F     +    F W   VD R       S L  N    +++  + G+GIA +  Y
Sbjct: 214 HECINFRSASGRV---FEWEFNVDGRAQKYLPTSRLTFNDADLVLRAVLNGAGIAQMAGY 270

Query: 248 IVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++D+     LV  +   +      Y CY        +++ F +F+  + R
Sbjct: 271 QIRDHLASKELVVALAKHVPEDRGHYICYLSRQHLPTRIRIFVDFMTEQIR 321


>gi|322834744|ref|YP_004214771.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169945|gb|ADW75644.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 300

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 141/296 (47%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +++F  V    SFT AA+ L+L +S+++  I  LE+ + I+L  R  R ++ T 
Sbjct: 1   MDKLDSMQLFTRVVELRSFTQAAQALNLKRSTVTDAIKQLESRLNIRLLQRTTRHVSATL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +E  ++    +  +P G LR+     + ++ L   L +FL  YPD
Sbjct: 61  DGEAYYQRCLRILADVEDAEMAFAGA--QPKGLLRVDVHGSMARHFLLPGLADFLAQYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+  +   ++ +D+  +  DC IR  + ++ S ++ R L T+     A+P YL+    P 
Sbjct: 119 IEFYMSEGDRLVDLVREGIDCVIRAGE-LKDSDMVARPLGTLPEITCASPDYLQRFGIPE 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +L  H +I F       +    + +   +R I  P  + L V+   S+ +    G G
Sbjct: 178 TPDDLAGHRMIGFRSSATGGLLPLIFQVQGKNREILLP--TSLSVSGAESMKEAARRGMG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P Y + ++    +LV+I+ D    S  V   YP   + + +++ F +++  +
Sbjct: 236 IIQVPHYGLLEDLAQGSLVQILADFPAGSLPVSLLYPRNRQLSPRVRVFIDWMVKE 291


>gi|315181802|gb|ADT88715.1| Transcriptional regulator [Vibrio furnissii NCTC 11218]
          Length = 303

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 142/300 (47%), Gaps = 9/300 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F   A+  +FT AAE+L+L++S++++ +S LE  +G+KL +R  R LTLT +G 
Sbjct: 7   FSGITAFVCTAQHKTFTAAAERLNLTKSAVAKSVSRLEERLGVKLLHRSTRQLTLTPEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   ++  +LE  +  LQ    KPSGKLRI      G+  +   L      YP++ +
Sbjct: 67  AYLKSCLDILGQLECAEALLQAKVDKPSGKLRIDLPAAFGRKKVLPLLLAMSAQYPELSL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  + + +DI  +  D  +R+ +  +SS L+ R L    M   AAP Y+     P S  
Sbjct: 127 AVTFNERFVDIVEEGLDVVVRIGELQESSGLVARHLTVQKMVMCAAPDYVARRGVPSSFD 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H+ +    +  K  +  +W+        +     +  + +   +I +  + G GI+
Sbjct: 187 DLKNHDCV----VSLKQNQPLSWVVKNCDGETVRFKPPATHEFSDGDAIREAVIAGCGIS 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            LP ++++D+     L  ++      S  ++  +P+      K++   + +   A+  +F
Sbjct: 243 QLPLWLIRDDLQAGRLQEVLPGHCAGSSPIHAVWPKNRHLLPKVRFVIDELVAFAQQGQF 302


>gi|313107434|ref|ZP_07793624.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|310880126|gb|EFQ38720.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 303

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 141/295 (47%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F  +   G+F  AA+ L L ++S+++ I  LE  +G++L  R  R ++LT 
Sbjct: 1   MDRFQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +         P G+LR+     LG+  +   L EF   YP+
Sbjct: 61  DGQAYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL  +++ +D+  + ADC +R+ + +  SSL+ R L  +     A+  YL+    P 
Sbjct: 121 LELQLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLQQVTCASAAYLERHGHPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
            + EL  H  + +    P     F++  +VD  +   P  S + VN+  + +  C  G G
Sbjct: 180 QLAELGGHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P Y V     + +L +++ + + PS  ++  YP   + + +++ F +++  
Sbjct: 238 LIQAPHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWLVE 292


>gi|293392431|ref|ZP_06636753.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291425085|gb|EFE98292.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 297

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 135/293 (46%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +LR F  +A  GSF  AA  L +S S++S+ +  LET +G++L  R  R +  TE G
Sbjct: 5   DFAELRAFVAIAEHGSFARAAAHLGMSASALSQTLRNLETRLGVRLLNRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L      +   L+    ++ +   +P+G LR+  T     + L   +  F   YPDI 
Sbjct: 65  AQLWERLRPLMANLDAAVAQVIDQRQQPAGLLRLNITRVAAMHFLAPRISAFNAQYPDIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L +++K +DI     D  +RL + +    +  +    + M   AAP+YL    EP + 
Sbjct: 125 LDLNVEDKLVDIVAGGFDAGVRLHEKLDKDMVAIKLGGELRMRVVAAPNYLSRYGEPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  + +       +  + +    ++ +       L VN    ++Q  + G GIA 
Sbjct: 185 RDLLQHRCLNYRWPTNGNLYRWEFERGAEK-LDIAVEGPLVVNEPEILVQAAIDGMGIAY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L ++ +        L+ +++D   P    Y  YP   +    L+AF +F   K
Sbjct: 244 LFEHQIAAGLAERRLLPLLDDWTPPFPGFYLYYPANRQMPRPLRAFIDFARAK 296


>gi|300715229|ref|YP_003740032.1| transcriptional regulator, LysR-type [Erwinia billingiae Eb661]
 gi|299061065|emb|CAX58172.1| Transcriptional regulator, LysR-type [Erwinia billingiae Eb661]
          Length = 295

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 141/295 (47%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LR++ VV  SGSFT AAEQL LS+  +SR+++ LE  +G +L  R+ R L++T+ 
Sbjct: 1   MQIDDLRIYLVVIASGSFTAAAEQLMLSKQYVSRRMAALEDSLGARLLIRNTRKLSVTDT 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +    +   +E  Q  + E      G  RI+  +  G + L   + EFL  +P +
Sbjct: 61  GHTFAQHAQRILEDIEEAQQAVSERHQALHGAFRISMPMSYGMSHLSPLIAEFLSRHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             Q+ L ++ +D+  +  D AIR+   +  S+L+ RKL  +     A+P YL+   +P  
Sbjct: 121 NFQIELADRYVDVIGEGFDMAIRIG-TLADSTLVARKLGELPRVICASPAYLQRLPQPEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  + +G       E    L    +         +Q N+   ++   V G G+ 
Sbjct: 180 PDDLLQHACLRYGREGQTGWE----LKVDGKRKIMAVSGPVQSNNGEVLLDAAVAGLGLV 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP++IV        LVR++++ I    ++   +P+  + +   + F  F+  + 
Sbjct: 236 LLPEFIVGGALARGELVRVLDEYIPSPLSLNAVFPQHRQRSEINRQFLAFLQDRL 290


>gi|127514147|ref|YP_001095344.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126639442|gb|ABO25085.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 303

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 140/289 (48%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA    + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARNTGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++  S +  ++E  +  ++ +     G LRIA  +   Q L+      F+ LYP++ 
Sbjct: 63  ALFYQHCSSISDEIEAAKATIENTHNDVFGSLRIAIPVSFSQELIASLCSSFMRLYPNVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDSDVGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPGYLKANGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L +H+ I  G      +     L   +R         ++VNS + + Q  +   GIA+
Sbjct: 182 QDLKEHSGILLGTSRSAPIWP---LGKGERKTMVNFKRKVRVNSAIMVKQLVLDDFGIAM 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L + + K+     +LV ++++     F VY  Y    +    +  F +F
Sbjct: 239 LSNSVCKNELAGGSLVPLLQEWPMEPFKVYGVYSSRRQLATNISVFLDF 287


>gi|311108827|ref|YP_003981680.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763516|gb|ADP18965.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           179 [Achromobacter xylosoxidans A8]
          Length = 298

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 7/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L+VF  V   G F  A+ Q+ LS +++S+ I+ LE+ +  +L  R  R ++LTE
Sbjct: 1   MDHLTALKVFRQVVERGGFAAASRQMGLSPAAVSKNIAELESHLAARLLNRTTRRMSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++ +   + +   L   +  L      PSG LR++  + L    L   +  FL  YP 
Sbjct: 61  AGARYYEQVARILDDLGEAEQSLGPLQQAPSGTLRVSAPMSLSLVRLSAAMPRFLERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L+++ IDI  +  D AIR    ++ SSL+ RKL+T+      AP Y +    P 
Sbjct: 121 VSLDLNLEDRRIDIVKEGYDVAIRGTDRLEDSSLVARKLMTLDHVLCGAPAYFERHGLPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S   L     + F          F      +R    P     +V+S L++      G G+
Sbjct: 181 SPLALRGMERVQFTLSGHADEWTFKRAGETER---VPVRGRYRVSSSLAVRDALRAGFGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +L+P   V+   D+  L  +++D       VY  YP       K++AF +F+  + 
Sbjct: 238 SLVPRIYVQQDLDSGALQAVLQDWQPDETYVYAVYPSRRHMVAKVRAFVDFLLEEL 293


>gi|296389043|ref|ZP_06878518.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 303

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 137/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F  +   G+F  AA+ L L ++S+++ I  LE  +G++L  R  R ++LT 
Sbjct: 1   MDRFQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +         P G+LR+     LG+  +   L EF   YP+
Sbjct: 61  DGQAYYERCVRLLAGLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL  +++ +D+  + ADC +R+ + +  SSL+ R L  +     A+  YL+    P 
Sbjct: 121 LELQLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + EL  H  + +         DF   +   R    P  S + VN+  + +  C  G G+
Sbjct: 180 QLAELGGHLAVNYQSPSSGRTADFE-FSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P Y V     + +L +++ + + PS  ++  YP   + + +++ F +++  
Sbjct: 239 IQAPHYHVAAGLADGSLRQVLGEWLPPSLPLHAVYPSQRQLSPRVRVFVDWLVE 292


>gi|294011553|ref|YP_003545013.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292674883|dbj|BAI96401.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 297

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 136/294 (46%), Gaps = 7/294 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D++   +F  V    SFT AA+ L +S++++S+ ++ LE  +   LF R +R L L
Sbjct: 1   MRLPDFEAWAMFAAVVEHRSFTDAAKALSVSKATVSKAVTRLEQHLDTSLFSRTSRRLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L    + +  + +  +   ++ + + SG +R+   +  G   +   + EF    
Sbjct: 61  TESGRRLAEHAARILSEGQAAEEAARDETAELSGTVRLGAPMTFGLLRIAPLVAEFTKQN 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I L L +  ID+     D  IR+   +  SSL  R+L  + +H  A+P YL     
Sbjct: 121 PHVDIDLHLSDARIDLVDMGLDATIRIAD-MPDSSLRARRLADVTLHVVASPAYLAERGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L  H+ + + +     +  F+     +  +     + L VNS  +++     G 
Sbjct: 180 PTHPSDLGDHDCLCYSNTPTPDVWRFSGPGQQN--VVVQVRARLTVNSGEAMLPALRTGV 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA LPD+IV +   +  L  I+ D   P F ++   P +     ++ A  +F+
Sbjct: 238 GIARLPDFIVGEAIASGELEEILVDWRPPPFGIHLVTPPSRLRPARVDAVLDFL 291


>gi|269102362|ref|ZP_06155059.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162260|gb|EEZ40756.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 306

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++ VF  + +  SFT AA+ L +S++ +S+QI  LE  +G++L  R  R   LTE G  
Sbjct: 6   QQMVVFNALTKQQSFTKAAQLLDISRTQVSKQIQLLEERLGVQLVQRTTRSFALTEAGKA 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +  ++   + EL        G L++        N L   + EF   YP ++++
Sbjct: 66  FAAHCANIVAEINEAESELLSDCDTLQGTLKVGVAQSFASNHLAPYIAEFHAQYPQLKLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +DI  +  D  I +         + R LV  H    A+P YL     P   ++
Sbjct: 126 MSLFDHRVDIIAEQLDLWIGMMDS-PPEGFVARHLVDCHFVLAASPEYLALHGVPYHPRD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +HN IT+     +  +D  W    D    + ++S   +V+S  +I    + G+GI  L
Sbjct: 185 LKEHNCITY---FSRERKDNVWSFKKDDEALQIKVSGNYRVDSADAIRDATLTGNGIGYL 241

Query: 245 PDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y++KD      L+R++ D        +Y  YP       K++AF +F+
Sbjct: 242 ATYLLKDELRQGKLIRLLPDWDLNQYMPLYAVYPRHKFLPIKVQAFIDFV 291


>gi|83749040|ref|ZP_00946047.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207743067|ref|YP_002259459.1| hypothetical protein RSIPO_01234 [Ralstonia solanacearum IPO1609]
 gi|83724303|gb|EAP71474.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206594464|emb|CAQ61391.1| hypothetical protein RSIPO_01234 [Ralstonia solanacearum IPO1609]
          Length = 306

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 132/300 (44%), Gaps = 5/300 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT
Sbjct: 1   MSNPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G      + ++   +E  Q     S     G+LR+   + + + ++   L  FL  +P
Sbjct: 61  QDGQAFFERSQDLLADMEELQTMFHHSPQALRGRLRVDMPVGVARKIVIPALPAFLDTHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L   ++ +D+  +  DC +R+   +  SSLI R L  +     A+P YL     P
Sbjct: 121 QLEIELSSTDRRVDLIREGFDCVLRIGA-LSDSSLIARPLGQLPQMNCASPAYLARYGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +LD+H L+ +   +   +  + ++    R    P    L V++  S    C  G G
Sbjct: 180 RSLDDLDQHRLVHYVQTLGTKVPGWEYVVD-GRAAYRPMQGVLTVSTAESYEAACQAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +   P   +        LV ++         V   YP       +++ F N++  +   +
Sbjct: 239 LIQAPVSGLAPQVARGELVDVLPQYRPAPMQVSLVYPNRRNLPVRVQVFMNWVAEQLAPY 298


>gi|298369439|ref|ZP_06980757.1| contact-regulated protein A [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283442|gb|EFI24929.1| contact-regulated protein A [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 300

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 138/298 (46%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGSF+ AAE+L L+ S++SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTHSDELAVFVQVVESGSFSRAAERLGLANSAVSRTVKRLEDKLSANLLNRTTRQLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +      ++ H +E  + E+  +   P G LR+ +      +L+   ++ F   +P
Sbjct: 61  EEGCRFFERARQILHDIEAAETEILSAGGAPQGVLRVDSATPTLLHLVAPLVRPFCERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L      ID+     D AIR    +  S+L  R L    +   AAP YL     P
Sbjct: 121 QVSLLLTSSEGYIDLIERRVDIAIRAGS-LHDSALRARHLFDSRLKLVAAPDYLARRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L +H LI F +  PK + ++ +  T   P     +  L  NS  +I + C+ G+G
Sbjct: 180 QTVADLSQHTLIGFSE--PKTLNNWPFADTGHTPYAA--VPQLSANSGETIRRLCLEGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D+    +    +L  ++ D     +   Y  Y      + K++AF +F   + 
Sbjct: 236 IACLSDFTAAADIAAGHLHELLPDRALNEAKPFYAVYYGDNAVSPKIRAFVDFFAEQL 293


>gi|239816923|ref|YP_002945833.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239803500|gb|ACS20567.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 300

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 140/293 (47%), Gaps = 6/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + +F  V  +GSF+ AA + H +Q ++++Q++  E  + ++L  R+ RG++LTE G+  
Sbjct: 6   AMEMFVRVVETGSFSKAALEFHTTQPTVTKQVAATEARLKVRLLNRNTRGVSLTEPGALY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  + E  +  ++    +  G LRI T++  G+ ++     E++  +P +Q+ L
Sbjct: 66  YEKCKNIVREAEEAESIVRLRQNQAQGLLRIGTSVAFGRRVVVPLALEYMRRHPQVQLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +D+     D AIR+ K +  SSL  R L T      AAP YLK    P   Q+L
Sbjct: 126 SFEDRYVDLIAQGIDVAIRMGK-LADSSLGARYLGTNPWAMVAAPGYLKKHGTPKRAQDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + +  ++    E +        P+  P     + N+  +++     G GIAL+P 
Sbjct: 185 SAHVALIYSSVVGD--EFWRMHTPKGDPVTVPVSGRFRSNNLSAVLAAARDGLGIALMPR 242

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           Y+  +   +  ++ ++ D   P   ++  +P      GK+  F  F+  +  +
Sbjct: 243 YVASESLASGKVLEVLGDHKLPEQEIHAVFPSPKLVPGKVSGFVAFLQGRFAE 295


>gi|330810041|ref|YP_004354503.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378149|gb|AEA69499.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 307

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 13/307 (4%)

Query: 1   MSFDWDKLRV-----FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   ++ L++     F + A +GSFT AA+   ++ +++SR I  LE  +G +LF R  R
Sbjct: 1   MKRHFEDLQLGSIELFCLAAEAGSFTAAAQLAGVTPAAVSRSIFRLEERLGSRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LTE G        +   +L   Q E+  +   PSG+LRI+     G + +   L  F
Sbjct: 61  SIRLTEAGKTYFEQCRQALTQLVEAQQEMMGAQSVPSGQLRISLPTTYGHHRILPLLPAF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
             LYP + + L L N++ID   +  D AIR+R     SS+I R L    +   A+P YL+
Sbjct: 121 RALYPQVSVDLHLSNRNIDFVAEGYDLAIRVRAQ-PDSSMIARLLEDAKLVVVASPDYLR 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQ 233
               P  +++LD+H  I F   +P      +WL  V+    E          +  L  + 
Sbjct: 180 KVGTPQVLEDLDEHECIQFE--LPSSGRRISWLFNVEGKEKEVFGEGGYCCSDDVLGGVT 237

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     +IV+    N  LV ++      S      YP       +++AF +F+
Sbjct: 238 LAKHGAGLFQTYKFIVEQELANGQLVEVLAPFAGRSRPFTLLYPHGRYVPQRVRAFVDFL 297

Query: 291 FLKARDW 297
                 W
Sbjct: 298 LQYREQW 304


>gi|293602079|ref|ZP_06684533.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292819534|gb|EFF78561.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 360

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 147/295 (49%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++VF  V  + SFT AA+ L L +++++  I  LE  +G++L  R  R + LT 
Sbjct: 1   MDRFQAMQVFVRVVDANSFTRAADSLSLPRTTVTTIIQNLERLLGVRLLNRTTRRIGLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++    +   +E T+   QE++++  G+LRI     +G+ +L  +L +F   YPD
Sbjct: 61  DGAGYYQHCVRILADVEETEACFQEAALRLKGRLRIDVPTCIGRLILIPSLCDFHDKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  DC IR    ++ SSL+ R++ T+     A+P Y+     P 
Sbjct: 121 VELVLGLGDRPVDMVQEAVDCVIR-GGELEDSSLVARRIGTLQTVTCASPTYIARHGMPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +I+ L  H+ + +   + +   +  W   VD    E  +   + VN   + +   + G G
Sbjct: 180 TIEALRDHHAVHY--FMSRTGRNCPWDFKVDGKHQEVDMKGTVAVNEAGAYLDCGLKGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  +  Y+      +  L+ I+      S  +   YP++ + + K++AF +++  
Sbjct: 238 LIQVARYMALPHLQSGELIEILPQWKPSSTPISVLYPQSRQLSPKVRAFTDWVAE 292


>gi|293403417|ref|ZP_06647508.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|293408441|ref|ZP_06652280.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298379028|ref|ZP_06988909.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300896274|ref|ZP_07114818.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|301020069|ref|ZP_07184199.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|281177480|dbj|BAI53810.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|284920105|emb|CBG33164.1| LysR-family transcriptional regulator [Escherichia coli 042]
 gi|291429270|gb|EFF02290.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|291471619|gb|EFF14102.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298280141|gb|EFI21645.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300359815|gb|EFJ75685.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300398946|gb|EFJ82484.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
          Length = 297

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 293


>gi|188534529|ref|YP_001908326.1| transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188029571|emb|CAO97448.1| transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 297

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHALKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++          LE     L + +   SG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIADLEQELESLVQLNGPASGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  ++I     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVNIVEGRFDAGIRLGESVDKDMIAVRIGPDMRMAVVGAPSYFAVNPVPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W    +      R+   +  N     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVRVEGQVTFNLLAERIDAVLSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V+D   +  LV++++D   P    Y  YP   ++        + +
Sbjct: 243 CVPENMVQDYIKSGELVQVLQDWCPPFSGYYLYYPSRKQHPPAFALMIDAL 293


>gi|126726258|ref|ZP_01742100.1| transcriptional regulator [Rhodobacterales bacterium HTCC2150]
 gi|126705462|gb|EBA04553.1| transcriptional regulator [Rhodobacterales bacterium HTCC2150]
          Length = 300

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 141/300 (47%), Gaps = 9/300 (3%)

Query: 1   MSFDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D   ++ +F  V   GSF+  +     + S++S+QIS LE  VG +L +R   G+T+
Sbjct: 1   MLMDISSQMLLFVKVVDLGSFSAVSRSSGQTPSAVSKQISQLEDHVGRRLLHRTRTGVTV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           ++ G++ +     +  K +     +     +P+G LRIA+++  G+  L   L  FL  Y
Sbjct: 61  SDDGAEFYIKCCALAEKYQDAADHIANFDPEPNGLLRIASSVAFGKFQLIVALPNFLAQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + L L ++ +DI  +  D AI   + + + ++I RK++       A+P ++     
Sbjct: 121 PKITVSLELTDRHVDIEEEQFDVAINFAEQLTNPNMIARKIMRNERVLCASPDFIAAHGV 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P S Q+L++ N +   +++ +      W A ++        S     NS  ++ +  + G
Sbjct: 181 PTSFQDLERFNCLRTSNMVGRN----AWTAELNGKTHTVDASGNFVGNSADAVYKAALAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIA L  YIV D      LVR+  + +     V   + E    + K++ F  F+  + +
Sbjct: 237 LGIARLSTYIVADKFETGELVRLFPEYVQKGADVAVIFAEKRNLSPKIRLFVEFMADRFK 296


>gi|300693979|ref|YP_003749952.1| transcription regulator, lysr family; ttua activator [Ralstonia
           solanacearum PSI07]
 gi|299076016|emb|CBJ35327.1| putative transcription regulator, LysR family; putative ttuA
           activator [Ralstonia solanacearum PSI07]
          Length = 306

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 131/292 (44%), Gaps = 6/292 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A +GS + AA  L ++  ++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 10  ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++     L ++  +P G LR+  T+  G+  +   + E++  YP + +QL
Sbjct: 70  LEHARRILGEIDDLDQLLTQAKGRPRGLLRVNATLGFGRRHIAPAISEYVRQYPGVDVQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  IR  +P   + +I RK+        A+P YL+    PL+  +L
Sbjct: 130 QLSADPPPLNEDAFDVCIRFGEP-PDARIIARKVAPNRRLLCASPDYLRRHGTPLTPGDL 188

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +HN I    G          +   T  R         L  N     + + + G GI + 
Sbjct: 189 AQHNCIGIRQGSDAYGVWRLTSGKGTKRRTETIHVRGNLTTNDGEIAVNWALEGHGIVMR 248

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++ V+       LV+++    TP   +Y  Y +  + + +++ F +F+  +
Sbjct: 249 AEWDVERYLRGGELVQVLPLYATPEADIYAVYLQRHQLSPRIRLFVDFLAGR 300


>gi|270263398|ref|ZP_06191667.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042282|gb|EFA15377.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 295

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 144/298 (48%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L  F  V  SGSF+ AAE+L  + S +SR +  LE ++G+ L  R  R ++LT
Sbjct: 1   MKANSDELITFVTVVESGSFSRAAERLEQANSVVSRTVKKLEAKLGVTLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    R   ++   +   +  L ES  +P G LRI     +  ++L   + EF   YP
Sbjct: 61  QEGENYFRQVQKILSDMAAAENTLMESRRRPQGLLRIDAATPVVLHVLTPLVAEFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+     I++     D AIR+ + +  S+L  RKL+T +    A+P YL     P
Sbjct: 121 EMSLSLVSSENFINLIERKVDIAIRVGE-LSDSTLKARKLMTSYRRVLASPAYLAQYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++ L++H  I F DL    +  +    T  R +       L  NS  +    C+ G+G
Sbjct: 180 QTVEALERHCCIGFNDL--PSLNRWPLACTDGRQLEI--TPGLTTNSGETQRHLCLHGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D+++  +    NLV I+     P +  +   Y      + +L++F +F+  + 
Sbjct: 236 IACLSDFMIDADIARGNLVPILVKETLPVAMPINAVYYSDSAVSNRLRSFIDFVSERL 293


>gi|293413543|ref|ZP_06656192.1| lysR family transcriptional regulator [Escherichia coli B185]
 gi|291433601|gb|EFF06574.1| lysR family transcriptional regulator [Escherichia coli B185]
          Length = 297

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQQNGTPSGNIRLSAGEHAARSLVWPKLKPFLRKYPEIS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANSAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W    +      ++   L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKTLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 293


>gi|271500266|ref|YP_003333291.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343821|gb|ACZ76586.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 305

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA +GSF HAA+ L L  S+++  I  LE  + ++L  R  R + LT 
Sbjct: 1   MDRIQAMQIFIRVAEAGSFIHAAQTLSLPASTVTSTIKNLEKHLQVRLLNRTTRRVNLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G++      E+   +  T+  L ++  +P G+LR+     +   ++  NLK+F   YPD
Sbjct: 61  EGAQYLASCREILALIAHTESSLTDAIQRPQGRLRVDMPAGIAHAVITPNLKDFRRRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + + ++ +D+  +  DC IR    +  S+LI R L  +     A+P YL     PL
Sbjct: 121 IYLMIGVSDRQVDLIQEGVDCVIRTGD-LSDSTLIARPLGKLTWVTCASPAYLHAKGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I +     +   +  ++   +  I +     + VN     +Q C+ G G+
Sbjct: 180 TPDDLSHHQAIHYFSGNARRANEMRFVRGHESKIVQVN-GVMAVNETGLYIQMCLDGYGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A L   +V     +  L+ ++ED       V   YP     +  L+AF +++    R+
Sbjct: 239 AQLAKSVVSRYLQDKRLIEVLEDWRPADVPVTLLYPHHRFVSPALRAFTDWVAELFRN 296


>gi|145639041|ref|ZP_01794649.1| DNA topoisomerase I [Haemophilus influenzae PittII]
 gi|145272013|gb|EDK11922.1| DNA topoisomerase I [Haemophilus influenzae PittII]
 gi|309750999|gb|ADO80983.1| Putative LysR-family transcriptional regulator [Haemophilus
           influenzae R2866]
          Length = 305

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 138/293 (47%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGMMYYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K I++  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKINLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----AMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +I+    +   L+ ++ +       ++  YP       K++AF  F+
Sbjct: 236 IANLPKFILGSAFEKGELIELLPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|299770598|ref|YP_003732624.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700686|gb|ADI91251.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 301

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 1   MS-FDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           MS FD +   +L +F  V   GSF+  A    ++ S++S+ IS LE  +G++L  R  R 
Sbjct: 1   MSYFDINRSGELAIFIRVVELGSFSAVARACDMTPSAVSKLISRLEKRLGVRLLNRSTRQ 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
             LT +G + +     + + L+  +  +  +   P G++RI T++    + L   +  F 
Sbjct: 61  FQLTSEGCQFYEQGIHILNNLDELEQSVTANH-MPQGRIRIHTSLSYWTHFLLPCISLFN 119

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP I+++  L ++ I++     D AIR   P++SS+L+ R L +   H   +P Y++ 
Sbjct: 120 ECYPQIELEAHLSDEVINLVEQRIDVAIRTG-PLKSSNLVARSLGSTQKHYVCSPAYIEK 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235
              P   +EL  H L+     +    ++  WL   D + I       L+VN   +I+Q  
Sbjct: 179 YGCPQHPEELYAHQLL----DVSYQRQNKTWLFKKDEQEITLAPTQVLRVNHGEAILQLA 234

Query: 236 VLGSGIALLPDYIVKDNPN---LVRIMEDV-ITPSFTVYFCYP-EALKNTGKLKAFRNFI 290
           + G G+A L ++ V+       LV+I+ED  I  S   +  +         +++AF +F+
Sbjct: 235 LAGVGVAQLNEFQVRKALEQKLLVKILEDWNINASEEFHAVWIGHDKYVPKRVRAFLDFL 294

Query: 291 FLKAR 295
             +A+
Sbjct: 295 VEQAK 299


>gi|226946235|ref|YP_002801308.1| LysR family regulatory protein [Azotobacter vinelandii DJ]
 gi|226721162|gb|ACO80333.1| Bacterial regulatory protein, LysR family [Azotobacter vinelandii
           DJ]
          Length = 295

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 137/293 (46%), Gaps = 6/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +++F  +   GSF+ AAEQ  +S++S +  I  LE+ +G++L  R  R +++T 
Sbjct: 1   MDRFQAMQLFARIVELGSFSKAAEQQGMSRASATALIKQLESRLGVRLLQRTTRQVSVTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    V  ++E  +  L +++  P G+L++     LG+ ++   L +F   YP+
Sbjct: 61  DGRSYYQHCRSVLGEIEEVESVLSQNARHPRGRLKVDLPASLGRLVVIPALPDFQARYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++ + ++ ID+  +  DC +R+   +  S+LI R L  +     A+  YL     P 
Sbjct: 121 IVLEIGIGDRMIDLVREGVDCVVRIGG-LSDSTLIARSLPALPQVTCASAGYLARHGLPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ EL  H  I +       +      A   R       + L VN   + +  C  G GI
Sbjct: 180 SLDELQGHRCIDYLSATTGRLAPLE-FAVDGRIETRSLPASLAVNHGEAYVAACEAGLGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +P Y V+      +LV ++     P+  +   YP     T +L+ F +++ 
Sbjct: 239 VQVPRYHVERQLAAGSLVELLPQHPPPALPMTVLYPHHRHLTPRLRVFIDWLV 291


>gi|26989225|ref|NP_744650.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24984068|gb|AAN68114.1|AE016443_5 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 308

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 138/307 (44%), Gaps = 13/307 (4%)

Query: 1   MSFDWDK-----LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D      + +F + A  GSFT AA    ++ +++SR IS LE  +G +LF R  R
Sbjct: 1   MQRHFDDVLLGSIELFCLAAELGSFTAAALAAGVTPAAVSRSISRLEERLGSRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LTE G   +    +   +L   +  +     +PSG LRI+     G + +   L EF
Sbjct: 61  SIRLTEGGRGYYEQCRQALTQLVEAERVVTGQQQEPSGTLRISLPTTYGHHRILPLLPEF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP +Q+ + L N++ID   +  D AIR+R     S+LI R L    +   A P YL+
Sbjct: 121 RRRYPKVQVDIHLGNRNIDFVGEGYDLAIRVRAQ-PDSTLIARPLEDARLVVVATPDYLE 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQ 233
           +   P S++EL +H+ I F   +P       WL   +    E       +  +  L  + 
Sbjct: 180 HAGAPQSLEELAQHDCIQFE--LPSSGRRIAWLFDEEGREREVLTEGGYVCSDDVLGGVT 237

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     +IV+      +LV ++      S      YP+      +L+AF +FI
Sbjct: 238 LAKHGAGLFQTYRFIVERELAEGSLVEVLRPFAGRSRPFTLLYPQGRHMPLRLRAFVDFI 297

Query: 291 FLKARDW 297
             K R W
Sbjct: 298 MDKRRHW 304


>gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151279887|gb|ABR88297.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 361

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 136/290 (46%), Gaps = 8/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++AR G+ + AA  L ++  + +++++ LE+ +G++L  R  R ++LT +G   
Sbjct: 64  ELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSEGEIY 123

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +  +++  +  +      P G LR+  T+  G+  +   + EF+  YP +++Q 
Sbjct: 124 LGYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQVEVQF 183

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +K ID+  +  D AIR    +  + L  RKL++      A+P YL+    P ++ +L
Sbjct: 184 EVSDKPIDLVENGFDLAIRFG-TLPDTRLNARKLMSNRRFLCASPIYLERHGTPQTLADL 242

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  IT             W  T D      ++ S L  N    ++ + +   GI +  
Sbjct: 243 SRHRCITHRQNDEAA---ATWRFTRDGRNEVIKVESALSSNDGDIVLGWALDAHGILIRS 299

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++ +     +  L  ++ D + PS  ++  YP     + + +AF +F+  
Sbjct: 300 EWDLAKYVKSGRLKIVLPDYVLPSADLFVYYPNRRNQSTRARAFIDFLIE 349


>gi|149925523|ref|ZP_01913787.1| Transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
 gi|149825640|gb|EDM84848.1| Transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
          Length = 298

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 135/295 (45%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            + +L  F ++ R GS + AA  ++++  + + +++ +E  +G +L  R  R ++LT +G
Sbjct: 6   TFSELEFFVLLNRLGSLSAAARAMNITPPAATMRLASMEKRLGARLLNRSTRKISLTPEG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +    +  +L+     + +S   P G LR+   +  G+ ++   + EF   YP+++
Sbjct: 66  EIYLQHAIRLVAELQELDELILDSRRAPRGILRVNAPLGFGRTIIAPLVSEFTSEYPEVE 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           IQL + ++ ID+     D AIR  + +  + +  R++++      AAP YL+    P ++
Sbjct: 126 IQLEVTDRPIDLIETGFDLAIRFGE-LPDNRINARRIMSNRRFMCAAPAYLEKHGVPKTL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L KH  I              W   V+      ++ S L  N    +  + + G GI 
Sbjct: 185 ADLTKHRCIVHRQNDDAYG---VWRFLVNGQTEFVKVHSALSSNDGDIVQGWALDGQGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  ++ V    ++  L R++     PS  +Y  YP       +++ F +F+  K 
Sbjct: 242 IRSEWDVTKYLESGRLRRVLPAFKLPSADLYAYYPSKQNQAARVRVFIDFLVKKL 296


>gi|260550586|ref|ZP_05824795.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406297|gb|EEW99780.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 309

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G 
Sbjct: 10  LNEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I I
Sbjct: 70  QVYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    
Sbjct: 130 QMLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGIPNHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I  G+        F      ++ I          N     +   +   GIA L
Sbjct: 189 DLKQHECIYLGEQASDSKWKFQ---QGNKSISVAVRGRYAANHTGVRLSAALQHLGIASL 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++ +       LV+++ D    ++    ++  YP       KL     ++  K 
Sbjct: 246 PYFVARHALQQGTLVQVLPDWYFKTYYSGGLWLLYPPTRHVPPKLSVLIQYLADKL 301


>gi|220908328|ref|YP_002483639.1| LysR family transcriptional regulator [Cyanothece sp. PCC 7425]
 gi|219864939|gb|ACL45278.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 7425]
          Length = 293

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 12/295 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F      GSF+  A +L  +Q +IS+QI+ LE  + ++L  R  R ++LT++G + +
Sbjct: 8   LKSFVRTVEMGSFSAVARELGTTQPTISKQIAALEAYLDVQLLVRSTRKVSLTDEGLRFY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   L   +  +      PSG+LRI  ++  GQ  +   LK FL  YP IQI L 
Sbjct: 68  EHCQFVLAALSEAESSV-GKRQNPSGRLRINCSVAFGQMQVLPRLKRFLDRYPQIQIDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  ID+  +  D AIR+ + +   SL+ + +        AA  YL+   +P    +L 
Sbjct: 127 MADHFIDLVEEGMDLAIRIGRFV-DPSLMAQPIGVSRFVTVAAVDYLEKFGQPQVPTDLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN I +       +  +                 LQVN+ +++ +  + G GI   P +
Sbjct: 186 QHNCIVYTRQSTGNVWQY-------GDTSVTVQGNLQVNNSIALREAVLAGIGIGTSPIW 238

Query: 248 IVKDNP--NLVR-IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
              +      V+ ++ D       +   Y        KLK F +F+  + +   F
Sbjct: 239 AFSEELQKRSVKLVLADYEPEPLPIQVVYRRGRFQAAKLKCFIDFLINEFKSEPF 293


>gi|268593273|ref|ZP_06127494.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291311171|gb|EFE51624.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 298

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F+ VAR  SFT AA +L +SQS++S  +  LE  +  +L  R  R +  TE G
Sbjct: 5   NFNELQIFFAVAREKSFTKAAAKLGVSQSALSHAVKALEERLNARLLTRTTRSVAATEMG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K+         +L      + + +   SG +R++T     ++LL   LK FL  YPDI 
Sbjct: 65  EKIIACLEPRLAELNHELEAIIQLNGAASGNIRLSTGEHAARSLLWPKLKPFLRAYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  ++I  +  D  IRL + +    +  +    + +    +P Y +    P + 
Sbjct: 125 VELVVDNGFVNIVDEGFDAGIRLGESVDKDMVAVKIGSDMRLAIVGSPSYFETQGIPRTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I     +P     ++W    +      R+   L  N     +   + G GIA
Sbjct: 185 HDLQHHRCINM--RLPTAGGLYHWEFEKEGKSLRVRVEGQLTFNLLSERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  +++   +  LV+I+ D        Y  YP   ++        + +
Sbjct: 243 CVPEDTIQEPVKSGKLVQILSDWCPAFSGYYLYYPSRKQHPPAFALLIDAL 293


>gi|17549131|ref|NP_522471.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431382|emb|CAD18061.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 309

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 135/298 (45%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L  F  V   G F  AA +L L+ SS++RQ++ LE  +G +L  R  R +TLTE
Sbjct: 1   MDRFGALSAFVAVVEHGGFAPAARRLGLAPSSLTRQLNALEASLGTRLMNRSTRSVTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++ +     +  +L++    + E +  PSG LR+   +  G+  +   +  FL  +P 
Sbjct: 61  AGAQYYDDARRILEELDSADRTVSELAGPPSGLLRVTMPVAFGRLHVAPAIPAFLRRFPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L +  +++  D  D AIRL   + + +L+ RKL        A+P YL     P 
Sbjct: 121 MRLDIRLTDAMVNLVEDRIDVAIRLGA-LTAPNLVARKLAPHRRVICASPDYLGEHGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  HN + F  L          L    +    P    L+ N    + +  + G+G+
Sbjct: 180 QPRDLAHHNCLLFDYLTGDSTWT---LTRDGKREKVPVSGNLRANGSELLREAAMGGAGM 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSF------TVYFCYPEALKNTGKLKAFRNFI 290
            L+P ++V D+     LV ++E              ++  Y    + + KL  F +F+
Sbjct: 237 LLMPTWLVGDDIAAGRLVPVLEPWTPTPGADEGESAIWAVYLPNRRGSKKLAGFLDFL 294


>gi|330817470|ref|YP_004361175.1| transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327369863|gb|AEA61219.1| transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 300

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFIAVAGKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLLRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + H ++  +  +    VK SG LR++     G+  +   +  F   +PD
Sbjct: 61  EGSAFLEDCQRIVHDMQNAEASVSAGGVKASGHLRVSGPAGFGRRHVAPLVPAFTAAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  DCA+RL + +  SSL+  KL        AAP YL     P 
Sbjct: 121 VTITLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVAAPAYLARAGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           ++ EL +H+ +    L     +   W    D  I   R++  ++ +    + ++C+ G G
Sbjct: 180 TLDELARHHCLA---LAANANQQRGWAFQQDGQIVSIRVAGPMECSDGAVLHEWCLEGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGADIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|307317996|ref|ZP_07597433.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306896398|gb|EFN27147.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 302

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G+FT A+  L++ +++++  I GLE  +  KL  R  R + +T 
Sbjct: 1   MDQLTAMRAFLRVVETGNFTRASASLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   + +   L+     L  +   P G+LR+ T       ++   L EF   YPD
Sbjct: 61  DGALYYERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHKKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ ID   +  DCAIR    +   SLI R++  +   A A+  +L+    P 
Sbjct: 121 IQIDLGVSDRTIDYLAENVDCAIRAG-TLTDQSLIARRITEMKFVACASRDFLERHPVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
              +L+K N    G  +PK  +   +         E      +  N   + +     G G
Sbjct: 180 HPSDLEK-NCYVVGYFLPKTGQQMPFHFRRGNEEIEVSGRYTVAANESTTYLAAARAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +   P ++V+++     +V ++ D       +Y  YP     + +L+ F +++ 
Sbjct: 239 VIQAPLFMVREDLRNGTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWVV 292


>gi|307552215|gb|ADN44990.1| transcriptional regulator [Escherichia coli ABU 83972]
 gi|320197246|gb|EFW71862.1| Transcriptional regulator, LysR family [Escherichia coli WV_060327]
          Length = 297

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGMPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V+   ++  L++++++        Y  YP   ++        + +
Sbjct: 243 CVPEDMVQEYIESGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 293


>gi|296136448|ref|YP_003643690.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
 gi|295796570|gb|ADG31360.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
          Length = 299

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F   A + SF  A   L LS S++ + I+ LE  +G++LF+R  R ++LT++G
Sbjct: 3   NLSGLAAFVRAAETLSFVAAGRDLGLSASAVGKSIARLEKHLGVRLFHRTTRQISLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                       ++E  + EL ++   P G+L+I+    +G  LL   + +F   YP+I 
Sbjct: 63  MTFFVRCRSALQEIEDAEAELSKAKGTPHGRLKISLP-TIGYRLLLPVIPQFRHAYPEID 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++    ++ +D+  +  D  IR   P+  S+L  + L        A+P Y          
Sbjct: 122 LEFDFSDRLVDVINEGFDAVIR-SGPLSDSTLTAKPLCPYRFIVCASPAYFVQYGALGDA 180

Query: 184 QELDKHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++L  H  + F       ++++  N ++ +  P    R   L  N+  +++   + G GI
Sbjct: 181 RDLANHVCLRFKYPSSGKLQEWLVNGVSVLQGPSASVRSQQLVFNNTEAVLSAALQGLGI 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +PD++ ++      L+ ++E   T        +        +L+ F +F+
Sbjct: 241 AYVPDFVAREPLAEGKLLPVLESASTRQGMFQILWATNRHMVPRLRVFIDFL 292


>gi|77458595|ref|YP_348100.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382598|gb|ABA74111.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 313

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 142/297 (47%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LH+S++++++ I  LE  + +KL  R  R +  T 
Sbjct: 1   MDRFDAMQAFARVVEAGSFTKAAETLHMSKTTVTQLIQQLEARLRVKLLNRTTRKVNATA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    ++   ++  +  L  ++ +P G+LR+     L   +L   L EF   YP+
Sbjct: 61  DGAVYYERVIKLLADMDDAETSLPGAAAQPKGRLRVDVPSPLANLILVPALPEFCARYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI + + ++ +DI  +  DC +R    ++  SL+ RK+  + +  YAAP YL     P 
Sbjct: 121 IQIDMGVSDRIVDIIDENVDCVVR-GGELRDQSLMARKVADLQLGVYAAPSYLARAGTPA 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLG 238
             +EL    H ++ F  L  +  +   +    +    + +    L V+   + +   + G
Sbjct: 180 HPRELEDSHHRVVGF--LWARTGKPVPYALHNEHEDLQIKGRHVLAVDDGNAYLSAGLAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G+  LP Y+ K +    NLV + ED       +Y  YP     + KL+ F ++I  
Sbjct: 238 LGVLWLPKYMSKAHEASGNLVPLFEDWRLDPMPLYVAYPPNRHISRKLRVFIDWIAE 294


>gi|213969939|ref|ZP_03398072.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301382212|ref|ZP_07230630.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061331|ref|ZP_07252872.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|213925264|gb|EEB58826.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 301

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 131/295 (44%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FLAMRVYVKVVETGSLTAAAQACSISTTMVGNHLRALEQRLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  ++   EV   +  ++   +++  +P+G LRI   +  G  LL   L  F   +P
Sbjct: 60  EFGTAYYQRCLEVLGLVAQSEQLAEQAQGEPTGTLRITAPLTFGSELLAPALVGFSQRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L+L N+ +D+  +  D AIRL    QSS LI R L    +   A P YL     P
Sbjct: 120 DVKLDLVLTNQRLDMIDNGFDVAIRLGNLAQSSPLIARPLQDYTLTICAEPDYLARHSAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
              ++L  HN + F                +  P GE  +     +  N+   + Q    
Sbjct: 180 TRPEDLRAHNCLAFAYPAGDEWRTAGTQWRMTGPEGEVLVDVDGSMVANTSAGLYQAARA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     LV ++ D   P   +   Y +      KL++F  F
Sbjct: 240 GMGVVMLPDALVQRDLQEGRLVALLPDYRLPRRPMNLLYVQDRYRLPKLRSFVEF 294


>gi|170690230|ref|ZP_02881397.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170144665|gb|EDT12826.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 451

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 131/299 (43%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF  V  +GS T AA    LS + +   +  LET +G +L +R  R   ++
Sbjct: 148 MDL-LKAMTVFVRVVETGSLTAAAVACELSPTMVGNHLQALETRLGTRLIHRTTRKQQVS 206

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   ++   E+   ++ ++    +    P G+LR+   I      L  ++ ++   YP
Sbjct: 207 AFGQAYYQRCVEILGLIDDSEQLALDHLATPRGRLRVTAPIVFSNECLIPSIADYCARYP 266

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ ++  +   D+  D  + AIR+   + +  L+ R L    +   A+P YLK    P
Sbjct: 267 EVKLDIVATDALSDLMDDGFEAAIRIGA-LANPDLVARPLTPYRLVLCASPAYLKAHGSP 325

Query: 181 LSIQELDKHNLITFGDLIPKCME--DFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +  EL  H  +T+              W L   D     P    L++++  ++ +  + 
Sbjct: 326 ATPDELSAHQCLTYAYPPRSEWHAAQAEWILHGRDGRASVPVDGRLKIDNAEALRKAVLR 385

Query: 238 GSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GIA+LP  ++ ++     L +++ +   P   +   Y    + + KL++F +F+  +
Sbjct: 386 GLGIAMLPAILIDEDLRAKRLRKVLPEYSAPERQLSLLYLRERQMSLKLRSFIDFVVER 444


>gi|83749210|ref|ZP_00946211.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207743886|ref|YP_002260278.1| predicted xylanase/chitin deacetylase protein [Ralstonia
           solanacearum IPO1609]
 gi|83724104|gb|EAP71281.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206595286|emb|CAQ62213.1| predicted xylanase/chitin deacetylase protein [Ralstonia
           solanacearum IPO1609]
          Length = 299

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 133/291 (45%), Gaps = 8/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F      GS + AA +L LS     RQ+  LE  +G+KL  R  R  +LT+
Sbjct: 1   MDRLAAMQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGALGVKLLNRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +  ++E  Q ++ ES   P G+LRI+  I  G   L   L EF+  +PD
Sbjct: 61  GGRLFYERAKNILAEMEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L N+ +D+  +  D A R    +  S L+ R+L    +   A+P YLK   +P 
Sbjct: 121 ITVELSLTNRTVDLVEEAFDAAFRTGD-LPDSGLMARRLAPHRLTLCASPAYLKMRGQPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L KH  + F     +    F+     D  +  P       +S  ++    V G GI
Sbjct: 180 TPEDLRKHECLVFAHTSLRTQWSFD---GPDGSVKVPIKGRFLADSGEALRAAAVAGVGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L P  ++ ++     L RI++        ++  Y    + T KL++F +F
Sbjct: 237 ILQPAELLAEDIQTGLLTRILKRYEPTPRPLHVLYAPDRRMTQKLRSFLDF 287


>gi|264677462|ref|YP_003277368.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262207974|gb|ACY32072.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 303

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 137/293 (46%), Gaps = 5/293 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ L VF  VA   SFT AAEQL L++S +S  +  LE ++G +L  R  R + L+  
Sbjct: 1   MDFNALHVFTRVAELSSFTQAAEQLGLTKSRVSTVVQQLEKQLGTRLLQRTTRHVRLSAD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +    + E+   LE  Q   Q ++    G LRI     L ++++   L EFL  +P +
Sbjct: 61  GEQFLERSKELMADLEQLQAMFQPAASGLRGSLRIDMPNSLARDVVIPKLPEFLSAHPLL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +   ++ +D+  +  DC +R+  P+  + LI R +  + M   A+P YL+    P +
Sbjct: 121 EVGISTSDRRVDVVQEGFDCVVRIG-PLADTDLIARTIGAMEMCNLASPAYLERHGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +H +I + + + +    + +    +  +  P  S L VN   +    CV G G+ 
Sbjct: 180 LADLSRHCIIHYANQLGRHGAGWEYQRGKEIAL-HPVRSALVVNGTDAYQAACVAGLGMI 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             P    +   D   LV +M D       V   YP       ++ AF N+I  
Sbjct: 239 QAPVRGARHLLDQGLLVEVMPDFRAAPMPVSLLYPHRRHIAPRVTAFLNWITE 291


>gi|170683135|ref|YP_001742432.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|170520853|gb|ACB19031.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
          Length = 297

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNSTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 293


>gi|293416966|ref|ZP_06659603.1| LysR family transcriptional regulator YhjC [Escherichia coli B185]
 gi|291431542|gb|EFF04527.1| LysR family transcriptional regulator YhjC [Escherichia coli B185]
          Length = 323

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLPMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|170692588|ref|ZP_02883750.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142244|gb|EDT10410.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 307

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 140/297 (47%), Gaps = 7/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LRVF  VAR  SF+ AAE L +S + +S++I+ LET +G +L +R  R + +TE G
Sbjct: 8   DLGDLRVFCEVARKASFSAAAESLSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++    ++   ++    ++  +   P GKLRI+++   G+  +   L  F   YP + 
Sbjct: 68  ERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQLS 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I +  LI R+L + H    A+P YL     P  +
Sbjct: 128 VRLDLFDRLVDVAGEGFDLDIRIGDDI-APHLIARRLASNHRVLCASPDYLAREGAPRQL 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +   +           L              L  N     +Q+ + G GI L
Sbjct: 187 ADLSAHACLAIKERDHPFGLWR--LTVRGEAASIKVTGPLSTNHGEVAVQWALAGRGIVL 244

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              + V+   ++  L +++ DV  P+  ++  YP  L  + K++   +F+  +   W
Sbjct: 245 RSMWDVRPLLESGQLQQVLPDVTQPA-NLWAVYPARLAQSAKVRVCVDFLSEEFAQW 300


>gi|319795723|ref|YP_004157363.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598186|gb|ADU39252.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 309

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 131/297 (44%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W ++ +   +A +GS + AAE L LS ++ SR +S LE  +G +L  R+ R L LT+
Sbjct: 1   MDRWTEIALLVQIADAGSLSRAAEALGLSNAAASRHLSALEARLGARLVERNTRRLYLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L   +  +  +++ P+G LRI  ++    + +   L+++   YP 
Sbjct: 61  TGREFCARAKTILADLADAESTVNATALNPTGVLRITASLSFSIHHIAPLLRDYTQRYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + +   N+  D+  +  D AIR R+    S++  R+L        A+P Y      P 
Sbjct: 121 VTVHVEAANRYFDLIDNNIDVAIRTREYEPDSNVTIRRLGETRRVLAASPRYFAQHGFPK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL +H L+ +          F                 L+ N    +    + G GI
Sbjct: 181 TLDELKRHKLLIYTHANNPNELRFT---RKGETHTVSVTGLLESNDGQVLRAAALDGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + P YIV ++     LV  ++D   P  T+   YP     + K+++F +F+    +
Sbjct: 238 LVQPTYIVYEDIVAGRLVPTLDDWDLPHLTINLAYPSRKHLSAKVRSFIDFMAAHFQ 294


>gi|296114809|ref|ZP_06833458.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978623|gb|EFG85352.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 342

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 129/292 (44%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V  S SFT AAE L+L +SS+S  I  LE  +G +L  R  R +T T 
Sbjct: 1   MDRIDLFRVFARVVESASFTRAAETLNLPRSSVSTAIQELEGRLGARLLARTTRSVTPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   +E  +   +     P G LR+     +G+ L+   L EFL  YP 
Sbjct: 61  DGMAFYDHCLRLIADVEEAENLFRHDGASPRGLLRVNLPGRIGRLLVAPRLPEFLGRYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L + ++ +++  D  DC +R+  P+  S LI R++  + +   A+P YL     P 
Sbjct: 121 VDIELGVTDRAVNLVEDGIDCVLRVG-PLHDSGLIARRMGDLDLVNVASPAYLAQHGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +       +E + W          P    + VNS  + +  C+ G G+
Sbjct: 180 VPADLAHHLAVRYASPSTGRIEAWEW-EEGGTTNSLPMSGRVTVNSAEASIACCLAGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V     +  LV ++         +   YP     + +++ F +++
Sbjct: 239 IQVPAYDVAALVQSGALVEVLSQWRAAPLPMALLYPHRKHLSRRIQLFADWL 290


>gi|165976613|ref|YP_001652206.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876714|gb|ABY69762.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 297

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 133/302 (44%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+
Sbjct: 1   MDRITAIQVFLTVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       + +      +  G LRIA+    G   L   ++ FL  +P 
Sbjct: 61  AGEQAVEYCKKMTELTSAIEQDFLTQRGELRGSLRIASNAAFGSTHLLNAIRTFLAKHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL       
Sbjct: 121 LNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLARHGTIH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL  H  +   ++  K           ++       S L +N   +++ + +   GI
Sbjct: 180 SPQELANHRYLAHANVNRKEWT----FIKDEQETVLELTSQLTINDTGALLNFTLADGGI 235

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--- 295
           A+LP Y ++       L  ++ D   P++ VY  YP   +    +++F +F+  +     
Sbjct: 236 AMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLPKTVRSFVDFLVEEFEGKG 295

Query: 296 DW 297
           DW
Sbjct: 296 DW 297


>gi|77460541|ref|YP_350048.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384544|gb|ABA76057.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 298

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 137/296 (46%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F  V+   SFT A E L L +S++S Q+  LE  +G +L  R  R +  T+ G 
Sbjct: 4   LELLRTFVRVSELSSFTMAGESLGLPRSTVSEQVQALENLLGTRLLQRTTRKVQPTQDGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+  + ++   ++  +   ++     +G++RI     L + L+   L EF+  +P++++
Sbjct: 64  ALYERSKDLLSHMDEIENLFRQDEASLTGRIRIDMPNILARRLIMPKLPEFMARHPNLEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D+  +  DC +R+       S++ R L    M   A+P YL+    P +++
Sbjct: 124 EISSTDRRVDLLAEGFDCVVRIGAQ-PDQSVVARHLGDFSMINCASPAYLERYGVPQTLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+ +  ++    E F +     +    P    + VNS  +    C+ G G+  +
Sbjct: 183 DLAQHRLVHYVGVLGSRSEGFVY-EQDGQVHRVPMPGSVTVNSTDAYESACLGGFGLIQV 241

Query: 245 PD-----YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P      Y+  D+  +V ++     P+  +   Y        +++ F +++    R
Sbjct: 242 PRTGMNTYL--DSGEIVTVLPQYTAPAMGISLLYARQRHLPLRVRVFMDWLGELIR 295


>gi|206576553|ref|YP_002239098.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206565611|gb|ACI07387.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 301

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 130/296 (43%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L+ F  V  +GSFT AA+ L +  +++S+ I  LE  +G+ L  R  R +T+T 
Sbjct: 1   MDRFSALKAFTRVVEAGSFTRAADSLDMPNATLSKTIKQLEAHLGVSLLQRTTRRITVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     +   LE        +  KP G LRIA       ++L   L +F+  +PD
Sbjct: 61  EGREYYEKARCLLEDLEEIDASFNTAHNKPKGHLRIAIGGSTACDVLIPLLADFMTAWPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L + +K  D+     DCAIR   P+  S+LI RK+    +   A P YL+ C  P 
Sbjct: 121 IRIDLQVADKPADLISGNIDCAIR-GGPMDDSTLIARKIGEATLVTCATPGYLQRCGTPA 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           S  EL   H LI++  L P     F +  T      E +    L +N   + +     G 
Sbjct: 180 SPDELHHGHQLISY--LSPASGRAFPFRFTRHGVSTELKTEPHLGINESNAHIAAGEAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI     Y +K    +  LV I+       +  +  Y        +L+ F  ++  
Sbjct: 238 GIVQTFTYSLKPALASGKLVEILAAWRPAPYPFHVVYARHRHVPPRLRVFIEWLAA 293


>gi|330819596|ref|YP_004348458.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327371591|gb|AEA62946.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 333

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 126/295 (42%), Gaps = 4/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT AA+  H++   +SR IS LET++ ++L  R  R + +T
Sbjct: 1   MPM-LENMRLFVKVVETGSFTKAAQATHVATPQVSRAISSLETQLRVRLLNRTTRRIAVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      E+   ++  + E   ++  PSG+LRI  +   G+  L   L  +   YP
Sbjct: 60  EAGERYVAHCREILELVDHAEAEASGAARCPSGRLRIHASSGFGRRYLLPRLARYRETYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I L L  +  D+  +  D A+ +   +  S+LI  ++   +    A+P YL+    P
Sbjct: 120 EVTIDLTLAQRMPDLVDEGYDLAVVVASQLDDSALIAERIGNTYSVLCASPAYLRRSGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H  +                          R     VN   ++      G G
Sbjct: 180 ATVADLHDHVCLQLMVPNASAGSWQLEGMASSESFTPRRQWPFVVNVADAMADALRSGMG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP     D   + +LVR++      S  ++  YP       K++ F +++  
Sbjct: 240 IGPLPLSTALDSLRDGSLVRVLPAWRLRSHGIHALYPSRRHLEAKVRTFIDYLRA 294


>gi|288960083|ref|YP_003450423.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912391|dbj|BAI73879.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 306

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 133/298 (44%), Gaps = 7/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + +R+F  V   GS + A   L +S + +S +I  LET +G++L  R  R L  T
Sbjct: 1   MAL-LENMRIFVRVVELGSLSAAGRNLRMSPAMVSHRIQQLETHLGVRLLNRTTRQLQAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++   EV   +E  Q  +   S  PSG +R+   +  G+ +L   + +F   +P
Sbjct: 60  ETGMDFYQSCLEVLEAVERAQSSIAAGSGVPSGSVRVTAPLGFGRRILAPLVPDFCAAHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L L +  +D+  +  D A+R+   ++ SS + RK+  +     AAP YL     P
Sbjct: 120 LVEVRLRLSDHLLDLLREAVDVAVRMA-VLKDSSFVVRKIADVRRVLVAAPAYLSERGRP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  HN +      P   +    +     P+  P       +    +  + + G G
Sbjct: 179 STPADLSGHNCLLL--RFPGTQQYQWSVLEGGEPVKLPVSGRFDADDGDVLTGWALDGRG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA+ P + V D+     L  ++ D      T+   YP       K++AF + +  K +
Sbjct: 237 IAMKPLWEVADHLASGALAPVLPDFPPEPVTLAVLYPHRALVPAKVRAFADHMVPKIK 294


>gi|312115940|ref|YP_004013536.1| LysR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221069|gb|ADP72437.1| transcriptional regulator, LysR family [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 320

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 133/288 (46%), Gaps = 12/288 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F  V  +GS + A  +L LS + +S++IS LET +G +LF+R  R L LTE G   
Sbjct: 6   DLEIFARVVTAGSMSAAGRELDLSPAVVSKRISHLETRLGTRLFHRTTRQLQLTETGRGF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   ++  +  +     +  G L+I       +  +   L +FL  YPD+ I++
Sbjct: 66  YERVVQILATVQEAEAFVSSGHQRAGGSLKITAPTGFSRLHIAPYLGQFLKQYPDLSIEI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I  +  +DI  +  D AIR+ + +  SSL+ +KL        A P YLK    P ++ +L
Sbjct: 126 IATDMMLDIVREGIDVAIRISE-LDDSSLVAKKLAPCRRLFVATPEYLKEHGTPKTLADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            KH ++   ++  +       +   +  +       ++ NS   + Q  V   GIAL   
Sbjct: 185 AKHKILVENNVTWR-------VQGPEGDVSLKLSGEIKTNSSEIVHQALVTNCGIALRAT 237

Query: 247 YIVKDNP---NLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +++      LV ++      P   VY  YP+      +L+ F +F+
Sbjct: 238 WQIREELLSKKLVHVLPQYREAPGVAVYAVYPDKQYIPTRLRVFVDFL 285


>gi|271501127|ref|YP_003334152.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344682|gb|ACZ77447.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 304

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 139/298 (46%), Gaps = 15/298 (5%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M    D+L     F   A +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L
Sbjct: 1   MGLRMDRLLLMTCFVRTAETGSFSAAGRDLGLGQPNVSRHVATLEEHLQTRLLHRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT +G + +     +   +E ++   +E +V P+G LR+A    L    L  ++ +FL 
Sbjct: 61  SLTPEGERYYLEARRILEAVEESESSFRE-NVTPTGLLRVACPTALAHTFLVPHIPDFLE 119

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP++ + L ++++ I++  + A+ AIR+   ++ S++  R+L        A+  YL   
Sbjct: 120 RYPELTLDLQINDRYINLIDEGAELAIRIGH-LEDSAMRARRLGMFERVCVASNKYLAKH 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P   ++L KH+ + +  L       F       + I  P    L+VNS  ++ ++   
Sbjct: 179 GTPNIPEDLKKHDCLIYTLLTTGATWRF-------QDINVPVSGRLRVNSPEAVQKFVNA 231

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GIA  P+++ ++   N NL  ++ D   P   +   Y        +   F +F+  
Sbjct: 232 GVGIAQGPEWLFEEGLANGNLQLLLTDYTAPPVPIQAVYVANRLLPKRAIVFMDFVAE 289


>gi|148261035|ref|YP_001235162.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146402716|gb|ABQ31243.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
          Length = 310

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 138/296 (46%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR+F      GSF+ AAE      S++SR ++ LE ++G+ LF+R  R L LTE
Sbjct: 1   MDYLGALRLFGRAVELGSFSKAAEAQGAKVSTVSRAVAALEADLGVALFHRSTRRLHLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +   L+  +  +     +P G LR+      G+  +   + +FL LYP 
Sbjct: 61  PGEQFYAQVQAILRNLDEARDSVAAMQARPQGLLRLNLPGAFGRRHVVPFIPDFLKLYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L   +  +D+    AD AIR+  P+  S+LI RKL        A+P YL       
Sbjct: 121 LRLELSFTDVRMDLLASGADLAIRIG-PLIDSTLIARKLAGHRRVVCASPSYLAGAPPLA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L +HN + +                 +     P    L+ +   +++   + G GI
Sbjct: 180 APRDLLRHNALIYTLQPTDRWFFRRGTEAGEPEEEVPIAGILRSDDSEALLDAALAGVGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLP ++V ++     LVR++ D      T    +Y  YP   + + K++AF +FI
Sbjct: 240 ALLPVWLVGEDIARGRLVRLLPDWFSMISTRPGGIYGIYPPHARISPKVRAFLDFI 295


>gi|289671727|ref|ZP_06492617.1| LysR protein [Pseudomonas syringae pv. syringae FF5]
          Length = 311

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + +KL  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVKLLNRTTRRVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  ++  P G+LR+     L   LL   L  F   YPD
Sbjct: 61  DGAVFYERVVRLLADMDDAETSLSSAASLPRGRLRVDVPSPLASMLLMPALPGFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI + + ++ +D+  +  DC +R    I   SL+ R++  + +  YAAP YL+    P+
Sbjct: 121 IQIDMGVSDRMVDLIGENVDCVVR-GGEIADQSLMARRVGDLQLGVYAAPDYLQRMGTPV 179

Query: 182 SIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             QEL+   H ++ +          +      ++   + R   L V+   + +   + G 
Sbjct: 180 HPQELEDSAHRIVGYLWARTGKALPYAMQRNGEKLHVQGR-YTLAVDDGNAYVAAGLAGM 238

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LPDY+    ++   LV + ED    S  +Y  +P     + K++ F ++I  
Sbjct: 239 GILWLPDYMAKLYRERGALVPLFEDWQLDSMPMYVAFPPNRHISIKVRVFIDWITE 294


>gi|167562312|ref|ZP_02355228.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 306

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 141/300 (47%), Gaps = 12/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L  R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLNRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S+V PSG LR+     +G+ ++   L  FL  YP 
Sbjct: 61  DGTALYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPGFLDQYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L + ++ +++  +  DCA+R+   +  S LI R +  + +   A+P YL     P 
Sbjct: 121 ISIDLGVTDRTVNLIEERVDCALRVG-TLSDSGLIARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  +L +H  I +       +  + W+   TV+R   + R+    VNS  + +  C+ G 
Sbjct: 180 TPADLARHRPINYASPSSGRVAPWEWVEGDTVERLALQGRV---TVNSAEAYIACCLSGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKA 294
           G+  +P Y V  +     LV ++ D       +   YP     + +   F +++   LKA
Sbjct: 237 GLIQIPAYDVDTHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFHVFADWLETLLKA 296


>gi|163758385|ref|ZP_02165473.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
 gi|162284674|gb|EDQ34957.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
          Length = 338

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 139/294 (47%), Gaps = 12/294 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +   L +F  V  +GS + A  +L LS + +S+++  LE  +G +L  R  R ++LT
Sbjct: 1   MN-NLGDLEIFARVVSAGSMSAAGRELGLSPAVVSKRLRRLEDRLGTRLMQRTTRQISLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +   +E  +  +   S    G L+++     G+  +  ++  F+   P
Sbjct: 60  EAGQGFYERVVAILAGIEEAEAFVSRRSALARGVLKVSAPTSFGRMHIAPHINAFMQANP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L L ++ +DI  D  D AIR+ + +  SSL+ RKL  +     AA  Y++    P
Sbjct: 120 DLGVNLTLHDEFVDIVGDGYDLAIRIAE-LSDSSLVARKLAPVRRILVAAADYIRRNGNP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S ++L++H  ++  +  P  +E  +  + + RP G      LQ NS   + +  + G G
Sbjct: 179 DSFEDLERHVCLSPHNNDPWKLEGPSG-SMIHRPTGP-----LQTNSSEVVREAVIGGVG 232

Query: 241 IALLPDYIVKD---NPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IAL   + +     +  LV+++     + +  ++  Y        K++ F +++
Sbjct: 233 IALRSTWDIGAELSDGRLVQVLPAYEGSRNVAIHAVYASRRFLPAKVRVFIDYL 286


>gi|260773319|ref|ZP_05882235.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260612458|gb|EEX37661.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 290

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 141/290 (48%), Gaps = 11/290 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            W+ +  F  VA  GSFT AAE+LH S ++ISR++  LE  +GIKL  R  R +++TE G
Sbjct: 3   SWEGVNEFVAVAEMGSFTQAAERLHTSVANISRRVLQLEERLGIKLLLRTTRKVSVTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +   L   +  + +    PSGK+++   +  G+  +   L +FLLLYP ++
Sbjct: 63  MLYYQQCKVLVDGLLQAEQAITQIQHTPSGKIKVTAPVTYGEQKIAPLLHDFLLLYPQLE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L N+ +D+     D AIRL + ++ SS I RKL    ++  A+  YL     P ++
Sbjct: 123 LELVLTNQKLDLIDQGIDLAIRLGQ-LEDSSFIARKLSDRRLYVCASEDYLAQYGTPYAL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H+ +           D        +         ++ +S + ++   + G G+A 
Sbjct: 182 SELTRHSCLI-------GTHDHWRFKEHQQSRSIKVSGRIRCSSGMVLLDAALKGMGLAQ 234

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPDY V +      LV ++         V+  YP+    + K++   + +
Sbjct: 235 LPDYYVTEPLAQGRLVEVLATFRDDREGVWALYPQNRHLSTKVRLLVDHL 284


>gi|119898891|ref|YP_934104.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119671304|emb|CAL95217.1| transcriptional regulator, LysR family,putative [Azoarcus sp. BH72]
          Length = 298

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 139/289 (48%), Gaps = 6/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
                 F    + GSF  AA  L LS S++++ ++ LE ++G++LF+R  R + LT +G 
Sbjct: 4   LQAFLAFVETVKRGSFAAAARSLGLSASTVAKSVARLEADLGLRLFHRSTRQVVLTTEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L++  S +  ++E    E   +  +PSG LR++  + LG+  +   L E    +P + +
Sbjct: 64  ELYQRCSRIADEIEALHDEAAGARARPSGTLRLSAPVVLGRQRVVPALAELRRRHPQLGV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +D+  D  D A+R+  P+  S+L  R++   H+   AAP YL     P + +
Sbjct: 124 ELELADRQVDVLADRLDGALRVG-PLADSALAARRVGEHHIVTVAAPAYLARRGTPGTPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ + F    P       W             + L +N   +++     G G+A +
Sbjct: 183 ELAPHDCLLFRS--PSSGRTRPWAFAGGVTATLGDAATLAINDGEALVAAACAGMGLAQV 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY+V +      LV ++ D   P   +   YP A +   +L+AF   +
Sbjct: 241 PDYMVAEAIARGALVEVLADRRPPPLPISLVYPSARQPPPRLRAFIELL 289


>gi|330960843|gb|EGH61103.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 301

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 133/295 (45%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FQAMRVYVKVVEAGSLTGAAQACSISTTMVGNHLRSLEQRLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  ++   EV   +  ++   +++   P+G LR+   +  G  LL   L EF   +P
Sbjct: 60  EFGTAYYQRCLEVLGLVAQSEQLAEQAQGDPTGTLRMTAPLTFGSELLAPALVEFSRRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+L N+ +D+  +  D AIRL    QSS LI R L    +   AAP YL +   P
Sbjct: 120 EVKLDLVLTNQRLDMIDNGFDVAIRLGNIAQSSPLIARPLQDYTLTICAAPDYLAHHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           +  ++L  HN + F                +  P GE  +     +  N+   + Q    
Sbjct: 180 VRPEDLRSHNCLAFAYPAGDEWRTAGTQWRMTGPEGEVLVDIDGSMVANTSAGLYQAARA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     LV ++     P   +   Y +      KL++F  F
Sbjct: 240 GLGVVMLPDALVQRDLQEGRLVALLPGYHLPRRPMNLLYVQDRYRLPKLRSFVEF 294


>gi|126441263|ref|YP_001059505.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126450165|ref|YP_001080914.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|134277302|ref|ZP_01764017.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|217421619|ref|ZP_03453123.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|237812843|ref|YP_002897294.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|251766967|ref|ZP_04819900.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254177668|ref|ZP_04884323.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254179290|ref|ZP_04885889.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254197239|ref|ZP_04903661.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254200178|ref|ZP_04906544.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254258199|ref|ZP_04949253.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254297176|ref|ZP_04964629.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254358072|ref|ZP_04974345.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|126220756|gb|ABN84262.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126243035|gb|ABO06128.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134250952|gb|EBA51031.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147749774|gb|EDK56848.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|148027199|gb|EDK85220.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157807708|gb|EDO84878.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|160698707|gb|EDP88677.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169653980|gb|EDS86673.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184209830|gb|EDU06873.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217395361|gb|EEC35379.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|237504897|gb|ACQ97215.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|243064319|gb|EES46505.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254216888|gb|EET06272.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 327

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 135/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 28  MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 87

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LR++     G+  +   +  F   +PD
Sbjct: 88  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPD 147

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 148 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPG 206

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L +HN +    L     +   W       +   R+S  ++ +    + ++C+ G G
Sbjct: 207 TLDDLARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHG 263

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 264 LAWRSWWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 316


>gi|91780255|ref|YP_555462.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692915|gb|ABE36112.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 325

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 134/290 (46%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  V  +GSF  AAE L +SQ +IS+ IS LE  +G  L YR +R L+LT  G
Sbjct: 6   DFEAWAIFARVVDTGSFAKAAESLAMSQPTISKAISRLEQRLGTALLYRTSRRLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    + ++ E  + E    +  P G +R+A  +  G   L   +  FL  YPD+ 
Sbjct: 66  RMAMERAIRIMNEGEAVEAEASAQAATPHGTVRVAAPMSFGLKYLTPLVPAFLDRYPDVN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L LD+  +D+  D  D A+R+ + +  SSL  R+L  +     A+P YL     P   
Sbjct: 126 IELALDDTLVDVVADGFDVALRIAE-LADSSLRSRQLCAVRRPLVASPGYLDRHGRPRHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+ H  + + +L    +  F+     +     P    +  N+  ++    + G G+AL
Sbjct: 185 RELEHHACLIYTNLPTPGLWRFS--HATEGECAVPVKGKMWSNNAEALGPALLAGHGLAL 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++V +      L  ++ +       +    P  +    ++ A  +++
Sbjct: 243 QPEFVVWEALSRGELEEVLPEWQIARIHLNLITPPGVLRPARVTALLDYL 292


>gi|309379472|emb|CBX21838.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 299

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L VF  V  SGSF+ AAEQL ++ S+ISR +  LE ++G+ L  R  R L+LT
Sbjct: 1   MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAISRIVKRLEEKLGVNLLNRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++  R    +  ++   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGAQYFRRAQRILQEMAAAETEMLAVHEVPQGVLRVDSAMPMVLHLLVPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L+     I++     D A+R  + +  S L  R L        A+P YL     P
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSRFRVVASPEYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H  + F +     +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEELAGHQCLGFTE--SGSLNTWAVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++V ++     L+ ++ +  +  +      Y        +L+ F +F+  + 
Sbjct: 236 IACLSDFLVDNDIAERKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFVVEEL 293


>gi|162455419|ref|YP_001617786.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161166001|emb|CAN97306.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 327

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 137/298 (45%), Gaps = 11/298 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + L VF  VA + SFT AA +L + +S++SR ++ LE  +G++L  R  R + LT 
Sbjct: 24  TMDLNHLSVFAAVAETASFTEAARRLGVPKSTVSRGVASLEASLGVRLLQRTTRSVALTT 83

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          L      L E   +PSG LR+  T D    +L   L  F   YP 
Sbjct: 84  AGHALVDRLGSRLKALTEAIEGLPELEDEPSGTLRLTATADFATEVLAEILAAFCRRYPR 143

Query: 122 IQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I +++ L  + +D+  +  D A R L K  + S+L+ RK+  +H+  YA+P YL     P
Sbjct: 144 ITVEMHLSTQPVDLVKEGYDAAFRFLTKQPRDSTLVARKVGELHLQFYASPAYLAARGTP 203

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L  H+ +      P   ++      V R     RI  L VN      +    G G
Sbjct: 204 RTLEDLAGHDGVALIKTSPFGRDE------VSRAGARLRIRWL-VNDGFFAREVVRNGGG 256

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I LLP ++V+ +     LVR++     P+  V+  +P       K  A R+ +    R
Sbjct: 257 IGLLPTFLVQQDVLAGGLVRVLPRWTAPTGGVFLVFPSGQHLPRKTVALRDHVVEALR 314


>gi|149927837|ref|ZP_01916088.1| transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
 gi|149823459|gb|EDM82690.1| transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
          Length = 300

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 139/296 (46%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA +  ++ + ISR++  LE  +G+KL  R  R L LT 
Sbjct: 1   MDHFKQITTFAAVATKGSLSAAAREEGVAPAVISRRLDALEERLGVKLLLRTTRTLNLTY 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + L   +  +    +K SG LR++     G+  +   + +F+  +P+
Sbjct: 61  EGSAFLEDCQRILNDLSNAEASVSLGGIKASGHLRVSAPGGFGRQHVAPLVHDFVREHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+R+   +  SSL+  KL        A P YL+    P 
Sbjct: 121 VTVSLDLSDRVVDLLNENIDCAVRIG-VLPDSSLVGVKLADNQRLVVATPTYLQRHGSPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              EL KHN +              WL T++      R+S  L  N   SI+ + +  +G
Sbjct: 180 HPLELAKHNCLNLVS----SGAPSGWLFTINGEATPIRVSGNLACNDGSSILDWVLNDAG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A    + V+    + +LV +++D I P   +Y  +P+      +++ + +F+  +
Sbjct: 236 LAWRSRWEVQQYLRSGSLVTVLDDFIAPPNAIYAVFPQRKHLPLRVRLWIDFLKHR 291


>gi|148253183|ref|YP_001237768.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405356|gb|ABQ33862.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 302

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ + +F  V    SF  AA++L LS++S+S+ +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEAMAIFAKVVELRSFAGAAQELSLSKASVSKAVSRLEERLGTRLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +++    E  + E    S+ P G +R A  +  G   +   L  FL  YP++ 
Sbjct: 66  QRLSERAAQLLADGEAAETEALAQSLTPRGLVRFAVPMTFGVKKIAPLLPAFLEQYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +  +D+  +  D A+R+ + +  SSL+ R+L  +  +  AAP YLK    P   
Sbjct: 126 IDLHMSDATVDLIGEGFDLALRIAR-LPDSSLVARRLCPMPRYTVAAPSYLKRHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H    +  L    +  ++                L+VN+  +++   + G GIA 
Sbjct: 185 MHLAEHKCFGYAYLSTAGVWHYS--NAAGEQASVRPAGQLRVNNGEAVLPAVIAGLGIAD 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPD+I+ D   +  +  I++    P   ++   P       +++    F+  + 
Sbjct: 243 LPDFIIADAIASGEVEVILKGWSQPEGAMHLVMPPGGPRPARVEVLTEFLVKEL 296


>gi|238761173|ref|ZP_04622150.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238761426|ref|ZP_04622402.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238700400|gb|EEP93141.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238700653|gb|EEP93393.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
          Length = 300

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L VF  VA + SF  A   L +S S++ + I+ LE  +G++LF+R  R + LT +G
Sbjct: 10  NLSSLTVFVQVAETRSFVVAGRVLGVSASAVGKSIARLEARLGVRLFHRSTRSIALTSEG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +     +  +  ++E  ++E+ + + KP GKLR++    L   LL   L +F+L YPDI 
Sbjct: 70  AIFLERSRRILAEVEAAELEMLQLADKPRGKLRVSFP--LASTLLLPVLADFMLAYPDIV 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ +D+  +  D  +R  + +  S L  RKL   ++   A+P YL+   EPL  
Sbjct: 128 LDLDFSDRIVDVVEEGFDAVVRTGE-LTDSRLSARKLGQSNVLLVASPAYLEQYGEPLHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  + +       +E +      D  I       +  N+  + M + + G GIA 
Sbjct: 187 SELANHICLHYRYPNSGKLETWPLPYEPDLQIPI----SMVCNNIETRMCFALRGLGIAC 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPD+ + +      L  +++  +  + +++  +P     T KL+ F +FI  + 
Sbjct: 243 LPDFSMGNALVEGKLRTLLDGYMKRTVSLHVVWPSGRYITPKLRVFIDFISERV 296


>gi|186470638|ref|YP_001861956.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196947|gb|ACC74910.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 324

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 138/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAEQL + +++++  I  LE  +G++L  R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAEQLGMPRATVTTTIQNLEAVLGVRLMNRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   +  T    Q  + KPSG LR+     LG++L+   L+ F   YPD
Sbjct: 61  EGAAYYEHCIRIITDIAETDASFQAGNRKPSGALRVHMPNSLGRHLVIPALQSFHQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR    ++ SS++ R++ T+     A+P YL    EP 
Sbjct: 121 IALDLGLSDRPVDPVEEGIDCMIRAGA-LEDSSMVARRIGTLKRVTCASPDYLVRFGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           SI +L  H+ + F   +        W+  VD    E R+   + VN   + ++  + G G
Sbjct: 180 SIDDLAMHHAVNF--RVAHGTRPMPWIILVDGKPIEVRMNGVVTVNDSEAYVKCGMEGFG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     + +L  ++         +   YP     + K++ F +++  
Sbjct: 238 LIQPMLFMVAPQLRDGSLKEVLPAFKPKPKPISIVYPNNRHLSAKVRVFADWVAE 292


>gi|115380150|ref|ZP_01467182.1| LysR family transcriptional regulatory protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|310818714|ref|YP_003951072.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115362839|gb|EAU62042.1| LysR family transcriptional regulatory protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309391786|gb|ADO69245.1| Transcriptional regulator, LysR family protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 304

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 153/288 (53%), Gaps = 7/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +++  F  V   GSF+ AA +LH+  S++SRQ++ LE  +G++L  R  R L LTE G
Sbjct: 8   DLNQMLTFARVVARGSFSVAARELHVPPSTLSRQVASLERRIGLRLLERTTRKLRLTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +   S++   +E     ++  S+ P G LR++    LG+  L   L E++ LY D++
Sbjct: 68  ALYYERCSQIARDVEDADSTVRALSLTPRGTLRLSAPPVLGEMFLGPPLAEYVKLYRDMK 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L+++ +D+  +  D A+R+   +  SSL+ R+L        A+P Y+++   P S+
Sbjct: 128 VELSLNSRRVDLVQEGFDLAMRVAVALDDSSLMARRLGVSTRLLCASPQYVRDHGTPASL 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I+ G       E + +L      I       ++VNS   +++ C+ G+G+AL
Sbjct: 188 AELPAHPTISIGS----GHEPWRFLDAKGEVIEVKVEPRVEVNSSALVLELCLAGAGLAL 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P ++        +LV+++ ++ T    V   +P + +   K++AF +
Sbjct: 244 IPSFLAATRVAEGSLVQVLPEIRTRPLEVLLLFPSSRQLAPKVRAFLD 291


>gi|28901352|ref|NP_801007.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835957|ref|ZP_01988624.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260362908|ref|ZP_05775777.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260880195|ref|ZP_05892550.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260895312|ref|ZP_05903808.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260901137|ref|ZP_05909532.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28809899|dbj|BAC62840.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149750711|gb|EDM61456.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308085644|gb|EFO35339.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092481|gb|EFO42176.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308109354|gb|EFO46894.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308112024|gb|EFO49564.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 299

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 131/292 (44%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  +L+ S +S++++ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVIELGSFSKVAEANNLTNSVVSKRMARLEEEIGAQLLYRTTRKLTLTEAGKV 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+  D  D  IR    ++ SSLI R ++       A+P Y+    +P+   +
Sbjct: 124 MSLDNRFVDLVADGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPIEPID 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   W    D      R+S C   ++  ++ +  + G GIA +
Sbjct: 183 LTSHNCLQYAYQTTGASE---WEFKSDEGNYIVRVSGCFSTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V  +     LV I  +++     +Y  YP   +   K+K     I  +
Sbjct: 240 PRCLVYHDIRNGQLVDIFPELVGKKLGIYAVYPFTRQPPNKVKLLIEHIRER 291


>gi|330954094|gb|EGH54354.1| LysR protein [Pseudomonas syringae Cit 7]
          Length = 311

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + +KL  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAASTLHMSKTSVTQLVQQLEARLRVKLLNRTTRRVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  ++  P G+LR+     L   LL   L  F   YPD
Sbjct: 61  DGAVFYERVVRLLADMDDAETSLSSATSLPRGRLRVDVPSPLASMLLMPALPGFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI + + ++ +D+  +  DC +R    I   SL+ R++  + +  YAAP YL+    P+
Sbjct: 121 IQIDMGVSDRMVDLIGENVDCVVR-GGEIADQSLMARRVGDLQLGVYAAPDYLQRMGTPV 179

Query: 182 SIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             QEL+   H ++ +          +      ++   + R   L V+   + +   + G 
Sbjct: 180 HPQELEDSAHRIVGYLWAGTGKALPYAMHRAGEKVHVQGR-YTLAVDDGNAYVAAGLAGM 238

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LPDY+    ++   LV + ED    S  +Y  +P     + K++ F ++I  
Sbjct: 239 GILWLPDYMARPYRERGALVPLFEDWQLDSMPMYVAFPPNRHISIKVRVFIDWITE 294


>gi|320322273|gb|EFW78369.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331921|gb|EFW87859.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330873213|gb|EGH07362.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 301

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 131/300 (43%), Gaps = 10/300 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  S S T AA+QL+LS  ++S  +  LE E+G  L  R  R +++T+
Sbjct: 1   MDKLKSMQVFVQVVDSASLTKAAQQLNLSIGTVSNYLKYLEGELGAVLLMRTTRKISITD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    ++  L  +          P G L I+     G       L++F  ++P 
Sbjct: 61  YGVYYYKTCRSIFDLLHESAEVASNVIHNPEGVLNISMPRSFGIFGFLPTLEKFYRIHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + + +  +D S +  D A+RL   +  SSL+ R L    +   A+P YL     P 
Sbjct: 121 IRVDVSISDSLVDFSENRFDAAVRLG-VLSDSSLVARPLRPYKLVLCASPAYLARKGRPA 179

Query: 182 SIQELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           + ++L  H+ I      +          + +L      I     + +QVN    +    +
Sbjct: 180 TPKDLIVHDCIATYFDEYRTAWNTLQNTWEFLCADGEFIKVSVPARMQVNDAQGVCIMVL 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIALLP+ IV  +     L+ ++ D   PS  +   Y +      KLKAF  F+  +
Sbjct: 240 SGQGIALLPEIIVSAHLTEGRLIELLPDYQIPSRPMSLVYRKNSLMPFKLKAFIGFLMDE 299


>gi|86136307|ref|ZP_01054886.1| probable transcriptional regulator [Roseobacter sp. MED193]
 gi|85827181|gb|EAQ47377.1| probable transcriptional regulator [Roseobacter sp. MED193]
          Length = 299

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 133/295 (45%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR+F +VA  GSF+  A     + S++SRQIS LE  +  +L  R  R   LTE G
Sbjct: 3   DLNLLRLFVLVADQGSFSAVARSTRATPSAVSRQISRLEENLNTRLLQRTTRRQELTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   ++   ++T +  +   S  PSG LRI    DL   LL   L EFL  YPD++
Sbjct: 63  QVYLSHARQIIEDVDTARQAVSRLSNAPSGVLRITAEADLALTLLSPVLPEFLERYPDLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL   +   D+     D AIR+   +  SSLI ++L        A+P YL+    P   
Sbjct: 123 VQLHTSSTMEDLVSRGIDVAIRVGH-LSDSSLIAKRLTMSRSLLVASPEYLEQDIPPQQP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ ++F          F    + +     P    +Q +S + + +    G GIA+
Sbjct: 182 EDLRNHSCLSFKVDTDLVTWRF---KSGEEVTNVPVTGPIQASSLVLLKEAAKSGLGIAM 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP ++++    +  LV ++           +   YP       K++   +F+ ++
Sbjct: 239 LPVWMLRAELKSGTLVPVLPGFPLDPAATPISAVYPSGRNLASKVRVLIDFLAIR 293


>gi|319786571|ref|YP_004146046.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465083|gb|ADV26815.1| transcriptional regulator, LysR family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 304

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 133/292 (45%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +  R+F  VA  G FT AA+ L L ++S+S  +  LE+ +G +LF+R  R + LT 
Sbjct: 1   MDQLEHYRIFVRVAELGGFTRAADSLGLPKASVSGAVRRLESALGTQLFHRTTRRVQLTG 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+       +   + E      ++   + SG++RI  +  + + L+   L  FL  +P 
Sbjct: 61  DGAVFLERCRDFLGEAEELHTMFRQEPQQLSGRVRIGMSGGMARQLVLPRLGAFLDAHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L    + +D+  +  DC +R  + +   SL+ R+L    +   A+P YL+    P 
Sbjct: 121 LQVELGAGERRVDVVREGYDCVVRTGE-VADPSLVARRLGMAPVATCASPAYLERHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++++L  H L+ F     +  E F +               + V++  + +   + G G+
Sbjct: 180 ALEDLASHRLVQFAVAFGQKPEGFEYPLPDGGYASLEMPGAVTVDNGEAYVGAALAGLGL 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP + V++   +  LV ++  +      V   YP       +++   +++
Sbjct: 240 IQLPRFAVREALADGRLVEVLPRLPAAPMPVSLLYPLQRHMPRRVREVMDWL 291


>gi|299066748|emb|CBJ37942.1| putative transcription regulator protein, HTH-type [Ralstonia
           solanacearum CMR15]
          Length = 309

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 130/297 (43%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT
Sbjct: 4   MSNPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G      + ++   +E  Q   ++S     G+LR+     + + ++   L  FL  +P
Sbjct: 64  QDGQAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPAGVARRVVIPALPAFLDAHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L   ++ +D+  +  DC +R+   +  SSLI R L  +     A+P Y+     P
Sbjct: 124 QLEIELSSTDRRVDLVREGFDCVLRIG-TLGDSSLIARPLGQLPQMNCASPAYIARYGMP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +LD H L+ +   +      + +     R    P    + V++  S    C  G G
Sbjct: 183 RSLDDLDHHRLVHYVQTLGTKAPGWEYRID-GRTAYRPMPGVVTVSTAESYEAACQAGLG 241

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   P  ++        LV ++         V   YP       +++ F ++I  + 
Sbjct: 242 IIQAPVSVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWIAEQL 298


>gi|310816259|ref|YP_003964223.1| LysR family transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
 gi|308754994|gb|ADO42923.1| LysR family transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
          Length = 313

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 138/294 (46%), Gaps = 9/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA + SF  A+E +++S S++SR+++ LE  +G +L  R  R +  T+ G+   
Sbjct: 21  IAAFVAVAEAMSFARASEIVNVSASTLSRKVARLEDMLGTRLLERTTRRVVFTDLGAIYF 80

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   EV  +L+     +     +P G LR++  +  G+  L G + +F+  YP ++++  
Sbjct: 81  RHCREVLDRLKEADDVIASYHSEPQGLLRVSFPVAFGRLALPGIIADFIATYPKVKVEAN 140

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  +  +R+   +  SSL+ RK+ T      A+P Y+     P +  EL 
Sbjct: 141 YTDRFVDLLDEGYNAVVRIGS-LPDSSLVARKIGTNRKQLVASPEYIARYGRPQNPAELA 199

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + F   +        W       I    +S   + +S  +I +    G+GI ++ +
Sbjct: 200 AHHCLCFSRYVRGGT---TWQFKRGEQIDTVHVSGDFRSDSSEAIYEAACHGAGIGIIAN 256

Query: 247 YIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           YI     +  +LV ++ +    P  + Y CY        K +AF +F+  + R+
Sbjct: 257 YICGEAVERGDLVPLLPEWTVWPETSFYVCYASNKHLLPKTRAFSDFLVQRLRN 310


>gi|299068360|emb|CBJ39584.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 312

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+
Sbjct: 1   MDRLQSMRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++   ++  +      S    G LRI   +  G ++L   L  F  LYP+
Sbjct: 61  VGETYLQRCQQILLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P 
Sbjct: 121 VTFDVALSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +++  H +I      P+   ++   A   + I  P    L  ++   + +  +   GI
Sbjct: 181 RAEDIADHRVIAMWH--PQLRHEWEMTAPDGQSIAVPVQPSLVTSNAELMHRAVLADMGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L  Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A
Sbjct: 239 AILSSYMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQA 294


>gi|190573807|ref|YP_001971652.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011729|emb|CAQ45348.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 343

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 137/300 (45%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D ++  +F  V   GSF  AA+ L L ++++SR++  LET +G +L +R  R L LT
Sbjct: 1   MSHDLNETLIFVKVVEQGSFIAAAKSLGLPKTTVSRKVQELETRLGARLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      +G   +   L +F   YP
Sbjct: 61  EAGSIYHEHCQRIARELEEAESAVSQLQSGPRGWLRFTVPYSIGITWIAPLLGQFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIRLDMHMGNEKLDLIAGEADLALRVGA-LPDSNLVARKLGSLRTQVFASPAYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVL 237
           L  +EL  H ++             F W    +       P    +  N   ++    V 
Sbjct: 180 LHPEELQFHRILAMRKPYHTGNSPRFTWQLGENGGELRDFPVTPLMTANDMSALNGALVC 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+ L  D + K   ++  + R++     P       +      + K++AF +F+  K 
Sbjct: 240 GEGLLLTGDVMAKPFVESGMVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVEKL 299


>gi|110640569|ref|YP_668297.1| LysR family transcriptional regulator [Escherichia coli 536]
 gi|306813221|ref|ZP_07447414.1| putative transcriptional regulator, lysR family protein
           [Escherichia coli NC101]
 gi|110342161|gb|ABG68398.1| putative LysR-family transcriptional regulatory protein
           [Escherichia coli 536]
 gi|222032111|emb|CAP74850.1| hypothetical transcriptional regulator ycjZ [Escherichia coli LF82]
 gi|294490188|gb|ADE88944.1| transcriptional regulator, LysR family [Escherichia coli IHE3034]
 gi|305853984|gb|EFM54423.1| putative transcriptional regulator, lysR family protein
           [Escherichia coli NC101]
 gi|307628223|gb|ADN72527.1| putative transcriptional regulator, lysR family protein
           [Escherichia coli UM146]
 gi|312944888|gb|ADR25715.1| putative transcriptional regulator, lysR family protein
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|323953080|gb|EGB48948.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323958722|gb|EGB54423.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
 gi|324010236|gb|EGB79455.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
 gi|330910100|gb|EGH38610.1| transcriptional regulator, LysR family [Escherichia coli AA86]
          Length = 297

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V+   ++  L++++++        Y  YP   ++        + +
Sbjct: 243 CVPEDMVQEYIESGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 293


>gi|221211328|ref|ZP_03584307.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
 gi|221168689|gb|EEE01157.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
          Length = 322

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 138/295 (46%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAETLAMPRASVTTTIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++    E  + +      KP+G LR+     LG+ L+  +L  F   YPD
Sbjct: 61  EGAAYYEHCVKI--LSEIAEADASFQKGKPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     AAP YL    EP 
Sbjct: 119 ITLDLGLSDRPVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLRRVTCAAPDYLARHGEPR 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I +L  H  + F     +      W+  +D    E R+ + + VN   + +   + G G
Sbjct: 178 EIADLAGHYAVNF--RATQGGRAVPWVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     + +LV ++ D       +   YP     + K++ F ++I  
Sbjct: 236 MIQPTLFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWIAE 290


>gi|70729830|ref|YP_259569.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344129|gb|AAY91735.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 315

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 137/299 (45%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + V+  V  +G+ T AA +  +S + +   +  LE  +G++L  R  R   LT
Sbjct: 1   MDL-FQAMSVYVKVVEAGNMTAAARECGMSTTMVGNHLRALEQRLGVRLLNRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   ++    V   +  ++   ++   +P+G LRI   +  G   L   L EF    P
Sbjct: 60  DFGRDYYQRCLAVLGLVADSERLAEQVQGEPTGTLRITAPLTFGTERLAPALDEFRQRCP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L L N+  D++    D A+RL   + ++SLI R+L    +   AAP YL+ C  P
Sbjct: 120 QVKVELTLANQRFDLTDGTFDVAVRLGN-LDNASLIARRLQDYTLTICAAPEYLERCGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVL 237
              ++L +HN + F             L  +  P G    P    L  N+   + +    
Sbjct: 179 QVPEDLQRHNCLAFAYPAGDEWSATATLWPLRGPEGDVQVPVSGSLLANTSSGLHRAARG 238

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G G+ ++PD +V+++     LV +++D   P  T++  Y +      KL++F +F   K
Sbjct: 239 GLGLVMMPDALVEEDLQQGRLVPVLQDYQLPFRTMHLLYAQDRYRLPKLRSFVDFALEK 297


>gi|290512807|ref|ZP_06552172.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289774690|gb|EFD82693.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 301

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 130/296 (43%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L+ F  V  +GSFT AA+ L +  +++S+ I  LE  +G+ L  R  R +T+T 
Sbjct: 1   MDRFSALKAFTRVVEAGSFTRAADSLDMPNATLSKTIKQLEAHLGVSLLQRTTRRITVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     +   LE        +  KP G LRIA       ++L   L +F+  +PD
Sbjct: 61  EGREYYEKARCLLEDLEEIDASFNTAHNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L + +K  D+     DCAIR   P+  S+LI RK+    +   A P YL+ C  P 
Sbjct: 121 IRIDLQVADKPADLISGNIDCAIR-GGPMDDSTLIARKIGEATLVTCATPGYLQRCGTPA 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           S  EL   H LI++  L P     F +  T      E +    L +N   + +     G 
Sbjct: 180 SPDELHHGHQLISY--LSPASGRAFPFRFTRHGVSTELKTEPHLGINESNAHIAAGEAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI     Y +K    +  LV I+       +  +  Y        +L+ F  ++  
Sbjct: 238 GIVQTFTYSLKPALASGELVEILAAWRPAPYPFHVVYARHRHVPPRLRVFIEWLAA 293


>gi|157371299|ref|YP_001479288.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323063|gb|ABV42160.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 310

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++ F  VA  GS + AA  L L+Q ++S+QI+ LE ++  +L +R  R +TLT+
Sbjct: 1   MDKLNAMQTFVRVAELGSLSAAARDLGLTQPAVSQQIASLEQQLRAQLLFRSTRAVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +R    +   +   +  L   +++  G LRI      GQ  L      F   +P 
Sbjct: 61  AGAGYYRQIKPILAAVGEAEEVLHGQNLRLQGSLRIHAPTGFGQQHLTPLAIAFQQQHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L+LD++  D+  +  D AIR  + + S   + R+L  +     A+P YL    EP 
Sbjct: 121 LNIELLLDDRRADVIGEGIDVAIRFGE-LSSPGTVARRLGELQRILVASPAYLAAQGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL  H  I +  L      D   L     P         + N+  S++     G GI
Sbjct: 180 TLAELATHPHIRYSGLSD---ADTLTLIGPHGPEMVELRPVFRANNTFSLLAAIESGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                 ++     +  LV I+     P   ++  YP A    GK++A+  ++ 
Sbjct: 237 GGAQRPLIGRQLASGALVPILPAWRYPPMALHAVYPAARFIPGKVRAWVEYLL 289


>gi|171315636|ref|ZP_02904870.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171099168|gb|EDT43941.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 303

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 134/293 (45%), Gaps = 6/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AAEQL L + ++S  +  LE  +G++L  R  R + LT 
Sbjct: 1   MDHLHAMRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLGVRLLQRTTRRVALTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +   + +   L+  +    ++   P G +R+        N +   L++F   YPD
Sbjct: 61  EGTTYYERCTRLLADLDDAETLFDDAGAAPRGVIRVDLPERFALNKVIPALQDFHERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P 
Sbjct: 121 LRVVLSTTDRFVDLVADGIDCAVRVG-VLSDTSLVARRVGELAQINCASPAYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S  +L  H  + +         D+ +       +   ++ S + VNS  + +  C+ G G
Sbjct: 180 SPDDLPDHVAVGYFSSRTGRELDWEYADMDSGALQTVKMRSVVAVNSSQAYLACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   P   +    ++ +LV ++ +       V   +P       +++ F +++
Sbjct: 240 LIQAPREGLAPLLESGSLVEVLPEWHAEPLPVSVVFPSGRHLAPRVRIFVDWL 292


>gi|17547046|ref|NP_520448.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17429347|emb|CAD16034.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 299

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 133/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F      GS + AA +L LS     RQ+  LE  +G+KL  R  R  +LT+
Sbjct: 1   MDRLAAMQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGTLGVKLLNRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +  +LE  Q ++ ES   P G+LRI+  I  G   L   L EF+  +PD
Sbjct: 61  GGRLFYERAKNILAELEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L N+ +D+  +  D A R    +  S L+ R+L    +   A+P YLK    P 
Sbjct: 121 ITVELSLTNRTVDLVEEAFDAAFRTGD-LPDSGLMARRLAPHRLMLCASPGYLKMRGHPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L KH  + F     +    F      D  +  P       +S  ++    V G GI
Sbjct: 180 TPEDLRKHECLVFAHTSLRTQWSFE---GPDGSVKIPIKGKFLADSGEALRAAAVAGVGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P  ++ ++     L RI++       +++  Y    + T KL+AF +F+
Sbjct: 237 ILQPAELLAEDIQTGLLTRILKRYEPTPRSLHVLYAPDRRMTQKLRAFLDFV 288


>gi|253997383|ref|YP_003049447.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253984062|gb|ACT48920.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8]
          Length = 301

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +D + +  F  V     F+ AA +L +S+SS+S+ ++ LE  +G  L  R  R L+LTE 
Sbjct: 2   YDLNLMITFAHVVNEQGFSAAARKLGVSRSSVSKAVAKLEHNLGASLLNRSTRHLSLTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      + +  + +  Q  ++  S +P G L++A ++  G   +   + +FL  YP++
Sbjct: 62  GASFFDYCTRISDEADQAQKMIESLSAQPRGVLKVAASVAFGTLHIAPAVGDFLHRYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I + + ++ +D++ +  D  I + +     +L+ +KL  I     A P Y K    P S
Sbjct: 122 DIDMTITDRVVDLAEEGYDLVICVTRN-PPEALVAKKLAPIRRRLCATPDYFKQFGIPQS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q L +HN + +       +  F       +    P    L++N   ++ Q  + G G+A
Sbjct: 181 PQALVQHNCLDYIHSGDSGLWRFE---VAGKETLVPVSGRLRINDDEALSQVVLGGFGLA 237

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP +I+        L  ++ + I     VY  Y        K +A  +F+  +
Sbjct: 238 LLPTFIIGKEIQAKRLQSVLPEYIPIDQYVYALYLPKRNLPLKTRALIDFLSER 291


>gi|254418364|ref|ZP_05032088.1| hypothetical protein BBAL3_674 [Brevundimonas sp. BAL3]
 gi|196184541|gb|EDX79517.1| hypothetical protein BBAL3_674 [Brevundimonas sp. BAL3]
          Length = 290

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A  GSF  AAE + +S   +++ +  LE  +G  L +R  R  +LT+ G   +
Sbjct: 1   MAVFVKSADLGSFAAAAEAMGMSPQMVAKHVVFLEDRLGAALLHRTTRRQSLTDVGRAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  + E      Q+   +P G LR+   +  G   L   +  +L  YPD+QI L 
Sbjct: 61  DRCKLVLAEAEAADTIAQDMRSQPKGVLRVNAPMTFGSFTLAPFITRYLARYPDMQIDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D   +  D  +R+   +  SSLI   L    + A A+P YL     P +  +L+
Sbjct: 121 LNDRFVDPLEEGFDVMVRIGA-VGDSSLIAHPLAPYRLIACASPTYLARRGAPETPADLE 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ + +    P       WL T +    E + S  ++ N + +++   + G G+ L P+
Sbjct: 180 RHDCLAYAYWSPSI--PCRWLFTRNGRDEEIKASGRMRSNDWKALLHAAIEGYGVTLGPE 237

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++K   D+  LVR++ +   P   ++  YP   + T  +++F   +  + R
Sbjct: 238 SVMKAEIDSGRLVRVLPEYEGPVRPMHVLYPAGRRPTVNVRSFVEALTEEFR 289


>gi|227329235|ref|ZP_03833259.1| Regulatory protein, LysR family (Azotobacter vinelandii DJ)
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 298

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 144/296 (48%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +   VF  VA + SF  A   L +S S++ + ++ LE ++G++LF+R  R +TLT 
Sbjct: 1   MDSLNGFVVFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSITLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS     +  +  ++E  ++EL ++   P G+LR++    L  +L+   L EF+  YP+
Sbjct: 61  EGSLFLARSRRILAEIEAAELELSQTRAVPRGRLRVSLP--LVSSLVLPVLSEFMREYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++ +D+  +  D  +R   P+  S L  R+L        AAP YL     P 
Sbjct: 119 IELDLDFTDRMVDVIEEGFDAVVRTGDPV-DSRLTARRLGAFRSLLVAAPDYLTRRGTPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  + +       +E +  L         P  + +  N+  + + + + G GI
Sbjct: 178 IPVDLMQHTCLHYRFPSSGKLEPWA-LRLPPGEPELPLPTSMVCNNIETRLCFALQGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LPD+ +++   + +L  I+ D +  S   Y  +P +   + K++A  +F+  + 
Sbjct: 237 AYLPDFSIREPLASGHLQPILTDYVERSGVFYVLWPASKHPSPKVRALVDFLCERV 292


>gi|221215627|ref|ZP_03588589.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
 gi|221164456|gb|EED96940.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
          Length = 347

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 136/294 (46%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AA  L +++SS +  +  LE  + ++L  R  R ++LT 
Sbjct: 1   MDKLQAMQVFTRVVETKSFTGAAASLDMTRSSATTIVQNLEAHLKVRLLNRTTRNISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     V   +   +     S   P GKL++  +  +G+ ++   L EF   YPD
Sbjct: 61  DGAAYYERCLRVLADIADAESSF-SSIAAPKGKLKVDMSGAIGRLVVVPALHEFHSRYPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L + +KD+D+  D  DCAIR+  P+  S+L+ R++        A+P YL     P 
Sbjct: 120 IDLMLGVGDKDVDLVQDSVDCAIRMG-PLADSTLVARRIGVSDFVTVASPEYLARYGIPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I++LD H  + +       M + +++    +PI     S L  N   + +Q  + G G+
Sbjct: 179 TIEDLDNHTAVNYFSSRTGRMVEIDFVVD-GKPIDVKMRSRLAANDGEAYLQCGLRGHGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P ++   +     LV ++E      F +   YP     + +++ F  +I  
Sbjct: 238 IQTPHFLALPHLKSGALVEVLEQWRPTPFPISAVYPRNRHLSPQVRVFVEWISE 291


>gi|212709847|ref|ZP_03317975.1| hypothetical protein PROVALCAL_00896 [Providencia alcalifaciens DSM
           30120]
 gi|212687658|gb|EEB47186.1| hypothetical protein PROVALCAL_00896 [Providencia alcalifaciens DSM
           30120]
          Length = 299

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 9/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+  VF  V    SFT AA++L+++ S++SR +  LE ++G+ L  R  R + LT
Sbjct: 1   MKATSDEAHVFIEVVEQKSFTKAADKLNIANSAVSRTVKKLEEKLGVNLLKRTTRQIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    +    V  +++T + EL ++   P G LRI     +  +LL   +  F   YP
Sbjct: 61  AEGELYFQRMKNVLQEMQTIEDELLDTQSSPKGLLRIDAATPVTLHLLIPFVAIFRQQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ L+     +++     D AIR  + +  SSL  R L   +    A+P Y++   + 
Sbjct: 121 NIELSLVSSETFVNLIERKVDIAIRAGQ-LADSSLRARPLFNSYRKIVASPRYIETAEKI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H  +TF +          W    +  +       +  NS  +++Q CV G G
Sbjct: 180 TSVADLRHHTCLTFTEPTSLN----TWPVNTENGLLIDVADGISSNSGETLLQLCVNGEG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRN 288
           IA L D++V +      L+ ++ D I P     +  Y      + + +AF +
Sbjct: 236 IACLSDFMVNEGIKRGELIELLPDEILPIPLPFHAVYYSDKVVSQRTRAFID 287


>gi|300311868|ref|YP_003775960.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074653|gb|ADJ64052.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 307

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 132/293 (45%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR+F  VA   SF+ AA QL L  +S+S  I  LE  +G +L  R  R + LT  G 
Sbjct: 4   LDTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R + E+  + E+ +    + +   SG+LR+  +  + + ++   L  FL  +P ++I
Sbjct: 64  AFYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPSFLDKHPQLEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +D+  +  DC +R    +  SSL+ R +  +     A+P YL+    P +++
Sbjct: 124 ELSASDRRVDLVAEGFDCVLRTG-TLDDSSLVARPIGHLVQINCASPEYLRRYGTPQTLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+ +  ++      + W     +    P    + VNS  +    C+ G G+  L
Sbjct: 183 DLAQHRLVHYRQVLGGRSPGWEWFDG-QQTRSLPMAGSITVNSTETYYAACLAGLGLIQL 241

Query: 245 PDYIVK-----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P    +     D  ++V ++         V   Y        +L  F +++  
Sbjct: 242 PLVGAQKRQMLDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMDWLHA 294


>gi|254470959|ref|ZP_05084362.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211960101|gb|EEA95298.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 296

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 140/297 (47%), Gaps = 13/297 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++  F  V    S T A+ +  L  SSISRQI+ LE E+G++L  R+ R ++ TE G +
Sbjct: 3   KRIAYFNAVMEEQSITEASRRFDLQPSSISRQIASLEEELGVRLLNRNTRKVSPTEAGLR 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +  + ++   L+  +  + +   +P G L I++T+  G+ ++   +  F+  YP ++I+
Sbjct: 63  FYSYSRQILSDLDEAKRAISDLQQEPQGTLTISSTVGFGETVILPLVPAFMSEYPKLKIK 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L  + +D+  +  D AIR    +  SSLI R L+  +    A+P YLK    P + Q+
Sbjct: 123 VELTERVVDLIEEGVDVAIRSGS-LADSSLIARHLLPNNFIICASPTYLKQAGTPETPQD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KH  I +G          NW    D+         L+ NS     Q  +   G+AL+P
Sbjct: 182 LTKHRAIKYGYAG-----WANWFQISDKIERLTLSDTLETNSVNGQKQLILNHGGLALIP 236

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + V+       LV+++ D+           Y  Y +    + K+K F ++I    R
Sbjct: 237 HWAVRRELATGELVQVLPDLTFSPHGQQTSTYAIYLKRELISPKIKVFMDYITKSIR 293


>gi|325529783|gb|EGD06633.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 318

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 133/299 (44%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF  +  +GS T AA+  +LS + +   +  LE+ +G  L +R  R   ++
Sbjct: 1   MDL-LKAMTVFVRIVETGSLTAAAQACNLSPTMVGNHLQALESRLGTVLIHRTTRRQKVS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +    EV   ++  +    +   +P G+LR+   +      L   L ++   YP
Sbjct: 60  AFGQAYYERCVEVLGLVDDAERLALDHLKQPRGRLRVTAPVVFTNECLIPALADYYRRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ ++  +   D+  +  + AIR+   + S  ++ R L    +   A+P Y+     P
Sbjct: 120 EVKLDIVATDSLADLFDEGFEAAIRIG-VLSSPDVVARPLAPYRLVLCASPAYVDEHGAP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
            +   L +H  +T+                ++ P G   IS    L+++S  ++ +  + 
Sbjct: 179 TTPHALGQHQCLTYAYPPRSEWHTAQSRWVLEGPDGPLHISVEGRLKIDSAEALRRAALR 238

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GIA+LP  +++++     LV IM D   P  ++   Y +  + + KL++F  F+  +
Sbjct: 239 GLGIAMLPSMLIREDIRAGRLVEIMPDFAAPERSMSLLYLQERQKSPKLRSFTEFVVDR 297


>gi|300691422|ref|YP_003752417.1| transcription regulator protein, HTH-type [Ralstonia solanacearum
           PSI07]
 gi|299078482|emb|CBJ51135.1| putative transcription regulator protein, HTH-type [Ralstonia
           solanacearum PSI07]
          Length = 306

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 130/300 (43%), Gaps = 5/300 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + LT
Sbjct: 1   MSNPLEAMQIFVRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G      + ++   +E  Q   ++S     G+LR+   + + + ++   L  FL  +P
Sbjct: 61  QDGRAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPVGVARKIVIPALPAFLDAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L   ++ +D+  +  DC +R+   +  SSLI R L  +     A+P YL     P
Sbjct: 121 QLEIELSSTDRRVDLVREGFDCVLRIG-TLGDSSLIARPLGQLPQMNCASPAYLARYGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +LD H ++ +   +      + +     R    P    + V++  S    C  G G
Sbjct: 180 RSLDDLDHHRIVHYVQTLGTKAPGWEYRVD-GRTAYRPMQGVVTVSTAESYEAACQAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +   P   +        LV ++         V   YP       +++ F  ++  +   +
Sbjct: 239 MIQAPVSGLAPQIARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMTWVAEQLAPY 298


>gi|254427486|ref|ZP_05041193.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
 gi|196193655|gb|EDX88614.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
          Length = 303

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 141/288 (48%), Gaps = 5/288 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  + ++G  T AA  L +S ++IS+++  LE E+G++L  R+AR + +T++G  L   
Sbjct: 11  VFVQLVKAGKMTDAARVLGMSPATISQRLRHLEQELGVRLVNRNARAMKVTDEGRALFER 70

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   LE T   + + +  P G LR+ +T+ LG+N +   +KEF+  +P++ +QL L 
Sbjct: 71  LDGLMGDLEDTAEAVVQLAKGPHGTLRVWSTMGLGRNRIAVLVKEFIARFPEVPVQLFLG 130

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D   +  D AI + +P + SSL+ RKL+    H  A+P YL       + ++L  H
Sbjct: 131 DRPYDFVSEGLDVAIAIGQP-EDSSLVARKLMDNRCHLIASPQYLATHPALKTPEDLRDH 189

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             +              +    DR   +     L  +    ++Q+ V G GIAL   + +
Sbjct: 190 ECLILDCHASFKDFWPLYDDQGDRHAVKVH-GRLHTDHSEVLLQWAVDGMGIALKSAWDI 248

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +   D+  LV ++ +   P    Y  YPE      K + F +F+F K 
Sbjct: 249 QPYLDDGRLVEVLPNYRPPDLDFYLVYPERKCLPAKTRVFMDFLFEKV 296


>gi|332141527|ref|YP_004427265.1| probable transcriptional regulator, LysR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551549|gb|AEA98267.1| probable transcriptional regulator, LysR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 301

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 133/292 (45%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L+ F VVA  GSFT AA +L  S   +S+ ++ LE  +  +LF R  R + LTE
Sbjct: 1   MDRLTLLKTFVVVANEGSFTKAAVRLDTSNQLVSKYVAQLEKHLDTRLFNRTTRKIHLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +  + +   +   + +L   + +  G L ++  +      L G +  F   +P 
Sbjct: 61  AGRQCLQHANHILESINDMESQLGLFNTQAKGTLHVSAPVSFSTLHLAGAIGAFQHAHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L+++ ID+  +  D AIR    + SSSL+ +K+ TI++    +P YLK    PL
Sbjct: 121 VSINLQLNDRKIDVIDEGFDVAIRAGH-LASSSLVAKKITTINLALCVSPAYLKKYGRPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L   + + +  +     +  + L    +   +     L  N+   +      G G 
Sbjct: 180 HPSDLKPEHYLEYSYVNYDNNQ--SELIAALKANAQKSPPKLTANNGEVLTNVAKQGEGY 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P +IV +      LV I+++ I  S  +Y  YP     + KL+ F +F+
Sbjct: 238 VLQPTFIVGEALKKGELVSILDEYIPQSIALYAVYPHRKLISNKLRVFIDFL 289


>gi|209522430|ref|ZP_03271035.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209497133|gb|EDZ97383.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 312

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 13/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  SGSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVESGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVSRYQERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+  +  D ++ L   +  S L+ ++L +    A A+P YL+    P 
Sbjct: 121 VHIELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLERRGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
              +L +H  +     I    +      T D P GE  +    +  QVN   ++      
Sbjct: 181 KPADLAQHTCLQMVSPISPPDKW-----TFDGPNGEEIVPLGATTFQVNVAEAMAVAVSE 235

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+AL+P Y       +  LV ++ +  +    +Y  YP       K++ +  F+  + 
Sbjct: 236 GMGVALIPIYSAISGLRSGELVWLLPEYTSQQMNLYALYPSRQYLDAKIRTWVEFLRDEL 295


>gi|319793119|ref|YP_004154759.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595582|gb|ADU36648.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 323

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 144/294 (48%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F      GS + AA  L  +Q +IS+ ++GLE  +G++L  R A GL+LTE+G
Sbjct: 3   TLRALSAFVHSVELGSLSGAARALDTTQPTISKLVAGLERSLGVRLMRRGATGLSLTEEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + H     V         + +E   +P G LR++  + +GQ  L     EFL LYPDI+
Sbjct: 63  QRFHERARRVLEDYGDAVADAREQVQQPQGLLRVSAPVTMGQRHLNAMAMEFLRLYPDIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+LD++ +D   +  D ++R+   +    L+ + L +      A+P Y+    +P + 
Sbjct: 123 LELVLDDRFVDPREERIDVSLRVGGALP-PDLVAKHLGSWPRVLVASPDYIAARGKPRNP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ I +        +D   L   +  +  P  S L+VN+ ++++   + G+GI+L
Sbjct: 182 KDLLSHDYIRYA-----AGDDGVLLQGPEGAVTVPVRSRLRVNNAVAMLDSVLGGAGISL 236

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            P ++V     + +LVR++     P+  V+  Y        +++   +F+  + 
Sbjct: 237 QPTWMVASHLADGSLVRVLARHTGPAQEVHLLYAPRRHQPLRVRVLVDFLAERV 290


>gi|221213857|ref|ZP_03586830.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221166034|gb|EED98507.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 317

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 4/291 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D ++ F       S T +A +L LS+S +S++IS LE  +G++L  R  R +  TE 
Sbjct: 1   MNMDDIQAFLFAVERQSITDSARRLGLSKSVVSKRISDLERTLGVQLLMRSTRNVIPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++V S+   +L      + E +    G+LR+   + L +  L   +  F   +P +
Sbjct: 61  GRAFYQVASQAMRQLVDVSEAIAERAHGVCGELRVTAPVSLTRRWLGSAIAAFAASHPPL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  D++ +++ ++  D AIR  + +  S+LI R++ +       +P Y+    EP S
Sbjct: 121 RVTLETDDRIVNLDVERFDVAIRSAR-LPDSALIARRIGSCERVIVCSPEYIAKHGEPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +L KH  + +    P     F       +P      S    N+  ++    + G GIA
Sbjct: 180 IDQLLKHRCLNYSTAAPSATWSFAAPGGHGKPRAINPTSAFLSNNGETLCDAAIHGVGIA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP YIV D   +  L R++ D       VY  Y  +   + KLK F   +
Sbjct: 240 LLPRYIVDDALRDGRLARVLADASPQDEIVYAVYARSPFVSNKLKLFIEHV 290


>gi|126208177|ref|YP_001053402.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae L20]
 gi|190150008|ref|YP_001968533.1| HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303252384|ref|ZP_07338550.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247671|ref|ZP_07529712.1| hypothetical protein appser2_6650 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307263339|ref|ZP_07544957.1| hypothetical protein appser13_7580 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|126096969|gb|ABN73797.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915139|gb|ACE61391.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648843|gb|EFL79033.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855839|gb|EFM88001.1| hypothetical protein appser2_6650 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306871401|gb|EFN03127.1| hypothetical protein appser13_7580 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 298

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 133/292 (45%), Gaps = 11/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+   +S +  S+ I+ LE  + ++L +R  R +T TE
Sbjct: 1   MDKLNAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+  +  +   +    GK+ I+  +D G   +   L +F+  YP+
Sbjct: 61  AGLLYYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +   ++ +D+  +  D  +R+   ++ SS++ +++    +   A+P YL     P 
Sbjct: 121 IQLNIEFSDRRVDVVAEGYDLVLRIGA-LEDSSIVAKRIARSELVLLASPEYLAKHGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H  + + +       D       D+ +     + +  N+  +++Q      GI
Sbjct: 180 NLAQLTEHTCLIYENHQQWQFTD------GDQKVKIKPNAHVISNNGYALLQMTKAEQGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++ K+      LV I+      S  +   YP     + K+K    F+
Sbjct: 234 VNLPLFLAKEEISAGKLVEILPQYKQHSIDISILYPHRRYLSPKVKVLIEFL 285


>gi|187928558|ref|YP_001899045.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725448|gb|ACD26613.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 308

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 7/295 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS +  + +++F  VA   SFT AAE L + + + S  +  LET +G +L +R  R + L
Sbjct: 1   MSTNRLEAMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G   +    ++   ++  Q   ++S     G+LR+   + + + ++   L   L  +
Sbjct: 61  TQDGQTFYERCQDLLADMDELQTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+++I+L   ++ +D   +  DC +R+   +  SSLI R L  +H    A+P Y+     
Sbjct: 121 PELEIELSSTDRRVDPVREGFDCVLRIGA-LTDSSLIARPLGQLHQVNCASPAYIARYGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P ++ ELD+H ++ +   +      + +     R    P    + V+S  S    C  G 
Sbjct: 180 PRTLDELDRHRIVHYVQTLGTKSPGWEYTVD-GRSAFRPMKGAVTVSSAESYDAACRAGL 238

Query: 240 GIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+   P Y        +  L+ +M D   P   V   YP       +++ F N++
Sbjct: 239 GMIQAPVYAGLSSAIADGTLIDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWM 293


>gi|170018250|ref|YP_001723204.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739]
 gi|169753178|gb|ACA75877.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|323934697|gb|EGB31087.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1520]
 gi|323939499|gb|EGB35708.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
          Length = 323

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + +NLL   L EFL  +P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   N+ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHNRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|320181667|gb|EFW56582.1| Transcriptional regulator, LysR family [Shigella boydii ATCC 9905]
          Length = 297

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F +VAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLLVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLRKYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W    +      ++   L  +     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKTLRVKVDGQLTCSPLPERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 243 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 293


>gi|17544784|ref|NP_518186.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17427073|emb|CAD13593.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 312

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+
Sbjct: 1   MDRLQSMRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++   ++  +      S    G LRI   +  G ++L   L  F  LYP+
Sbjct: 61  VGETYLQRCQQILLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P 
Sbjct: 121 VTFDVALSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +++  H +I      P+   ++   A   + I  P    L  ++   + +  +   GI
Sbjct: 181 RAEDIADHRVIAMWH--PQLRHEWEMTAPDGQSIAVPVQPSLVTSNAELMHRAVLADMGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L  Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A
Sbjct: 239 AILSSYMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQA 294


>gi|330828658|ref|YP_004391610.1| LysR family transcriptional regulatory protein [Aeromonas veronii
           B565]
 gi|328803794|gb|AEB48993.1| LysR-family transcriptional regulatory protein [Aeromonas veronii
           B565]
          Length = 299

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LRVF  V   GS + A E+L +S++ +SR ++ LE+ +G +L +R  R L+LT 
Sbjct: 1   MDRLTALRVFVSVVEQGSLSGAGEKLDMSRAMVSRYLAELESWMGARLLHRTTRRLSLTG 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +    E  +    +    P G+LRI ++  L + LL G   ++L  YP 
Sbjct: 61  PGEEALNRARAMLALGEEMEQIAVKGDDAPKGQLRITSSYSLSEALLVGAANDYLAQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             I ++L ++ +++  +  D A+R+   +   +L+ R+L T H    A+P YL     P 
Sbjct: 121 TAIDILLLDRTVNLVEERIDLAVRITNDL-DPNLVARRLGTCHSVVCASPAYLARHPMPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +Q+L  HN +T+        E        D P   P    L  N    +++  + G+GI
Sbjct: 180 KVQDLALHNCLTYTYFGKSLWE----FNGPDGPESVPVSGNLSANISSLLLEATLEGAGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +L P Y  +   ++  LV ++ D       VY  Y    + +  L++F +F+  +
Sbjct: 236 SLQPRYSAQPYLEHGELVPLLTDWQPKRLGVYGVYATRKQMSPLLRSFLDFLLAR 290


>gi|307250442|ref|ZP_07532389.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857571|gb|EFM89680.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 297

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+
Sbjct: 1   MDRITAIQVFLTVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       + +      +  G LRIA+    G   L   ++ FL  +P 
Sbjct: 61  AGEQAVEYCKKMTELTSAIEQDFLTQRGELRGSLRIASNAAFGSTHLLNAIRTFLAKHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL       
Sbjct: 121 LNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLARHGTIH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL  H  +   ++  K            +       S L +N   +++ + +   GI
Sbjct: 180 SPQELANHRYLAHANVNRKEWT----FIKDGQETVLELTSQLTINDTGALLNFTLADGGI 235

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--- 295
           A+LP Y ++       L  ++ D   P++ VY  YP   +    +++F +F+  +     
Sbjct: 236 AMLPKYFIEQQLKNKQLQIVLPDWQMPTYQVYAVYPSRRQLPQTVRSFVDFLVEEFEGKG 295

Query: 296 DW 297
           DW
Sbjct: 296 DW 297


>gi|293608417|ref|ZP_06690720.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828990|gb|EFF87352.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 311

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 131/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G 
Sbjct: 10  LNEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I I
Sbjct: 70  QVYQRCLDMVNAAQAVMESSGQFHVEPEGVIRMSVPKAVGHFMIHPHLPEFLKRYPKIDI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    
Sbjct: 130 QMLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGIPNHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I  G+        F      ++ I          N     +   +   GIA L
Sbjct: 189 DLKQHECIYLGEQASDSKWKFQ---QGNKSISVAVRGRYAANHTGVRLSAALQHLGIASL 245

Query: 245 PDYI---VKDNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++         LV+++ D    ++    ++  YP       KL     ++  K 
Sbjct: 246 PYFVACHALQQGTLVQVLPDWYFKTYYSGGLWLLYPPTRHVPPKLSVLIQYLADKL 301


>gi|171317263|ref|ZP_02906461.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097582|gb|EDT42418.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 323

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 132/287 (45%), Gaps = 5/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R++  +  +  F+ AA +L  + S++SRQ+  LE  +G++L  R+ R  TLT  G + 
Sbjct: 29  AMRIYRCLVEAKGFSAAAARLDTTHSTVSRQLKLLEASLGVQLLNRNTRNFTLTAAGERY 88

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+  ++E    ++ ES  KPSG LR++  + +G   +   L  F   +PDI++ +
Sbjct: 89  YAACMEILERVEAAAEDVAESPRKPSGTLRVSMPLSIGTLEMPDWLPSFRRSFPDIRLDV 148

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++  ++  +  D A+R+   +  S L+ R L        A+P Y+     P +  +L
Sbjct: 149 SCSDRFSNLVGEGFDVALRISGDLPDSELMARTLAVSDEILVASPDYIARHGMPRTPAQL 208

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H L+ +     +   ++    +    +       L++++  +I    V G GI     
Sbjct: 209 ATHELLPYSG--REDGGNWRLTPSRGTAVSVKLDGYLRIDTITAIHASAVTGLGIGAFTH 266

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+   +   LV ++          Y  YP++   + K++AF +F+
Sbjct: 267 LTVRGDIERGRLVHVLPRYTLAKRKYYALYPKSRHVSPKVRAFIDFV 313


>gi|330976533|gb|EGH76583.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 304

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 128/288 (44%), Gaps = 5/288 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   AR+GSFT AA++L +++S++ + I+ LE  +G KLF+R  R L LT  G      
Sbjct: 13  IFVTAARAGSFTSAADRLGITKSAVGKSIAKLEERLGCKLFHRSTRSLGLTVDGEAYFAS 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S    ++   +  L  +   P G+LRI      G++++   L + L   P +++ +  +
Sbjct: 73  CSLAVDEVLAAEAFLTSNQKTPGGRLRIDLPAAYGRSVVLPVLLDILEANPGLKLTVTFN 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID+  +  D +IR      +S L+ R+L        AAP Y++    P S ++L +H
Sbjct: 133 DSVIDLIEEGVDLSIRFGALKDTSGLVARRLAVQKQIICAAPRYIQKHGYPESPEDLQQH 192

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I   +        +  L               +V    +I+     G GI  +P  ++
Sbjct: 193 RCIV--NYRRGQRVSWTVLDESGELARITPPGTHEVGDGDAIIAMAAAGQGICQMPGSLI 250

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +D   +  LV ++E        ++  +P+      K++   + +  +A
Sbjct: 251 RDHLKDGRLVPVLEKYHPDDVAIHAVWPQTRHLQPKVRRVVDELVARA 298


>gi|332187119|ref|ZP_08388859.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
 gi|332012819|gb|EGI54884.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
          Length = 306

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 143/300 (47%), Gaps = 9/300 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D +   +F  V    SF+ AA+ + LS++++S+ I+ LE ++   LF+R +R L L
Sbjct: 1   MRLPDLEAWAIFAAVVEHRSFSAAADAIGLSKATVSKAITRLEAQLNQSLFHRTSRRLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G  L    + +  +    +   ++++  PSG++R+A  +  G + +   + +FL  +
Sbjct: 61  TEAGKPLADHAARILAEARAAEEAARDAASAPSGRIRLAAPMSFGVSNIAPIIADFLAQH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+I+L L +  +DI  +  D A+R+   +  SSL  R+L  I  H  A+P YL     
Sbjct: 121 PGIEIELSLSDARVDIVAEGYDIALRIAD-LPDSSLRARRLCGISTHVVASPGYLAEHGH 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    EL +H L+++ ++       + +       +       L  NS  +++   V G 
Sbjct: 180 PRHPNELGEHRLLSYSNITG----PWRFRHPNGAEVSVRPQGPLTANSGDALVPAVVAGL 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA LP +I+  +        I+ +   P   ++   P +     +++A   ++  + RD
Sbjct: 236 GIARLPGFIIGPHLTSGAATEILTEWTPPPIGLHLLTPPSPLRPARVEALIAWLADRVRD 295


>gi|145632891|ref|ZP_01788624.1| DNA topoisomerase I [Haemophilus influenzae 3655]
 gi|145634327|ref|ZP_01790037.1| DNA topoisomerase I [Haemophilus influenzae PittAA]
 gi|229844177|ref|ZP_04464318.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           6P18H1]
 gi|144986547|gb|EDJ93113.1| DNA topoisomerase I [Haemophilus influenzae 3655]
 gi|145268307|gb|EDK08301.1| DNA topoisomerase I [Haemophilus influenzae PittAA]
 gi|229813171|gb|EEP48859.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           6P18H1]
          Length = 305

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGMMYYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKIDLLSESYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----AMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 236 IANLPKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|74314225|ref|YP_312644.1| putative LysR type transcriptional regulator [Shigella sonnei
           Ss046]
 gi|73857702|gb|AAZ90409.1| putative transcriptional regulator LYSR-type [Shigella sonnei
           Ss046]
          Length = 323

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + +NLL   L EFL  +P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   N+ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHNRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAMVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGQLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|27382676|ref|NP_774205.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355848|dbj|BAC52830.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 311

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 142/294 (48%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF  AA +L +S++++S+ ++ LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEALAIFAKVVELRSFAGAASELAMSKATVSKAVTRLEERLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL    + +    E  + E    SV P G +R+A  +  G   +   L EF   YP++ 
Sbjct: 66  HKLAERATRLLVDGEAAENEALAQSVAPRGLVRLAVPMTFGIKAVAPLLPEFFETYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  ID+  +  D A+R+ + +  SSLI R+L T+     AAP YLK    P   
Sbjct: 126 VDLHLSDATIDLIGEGFDMAVRIAR-LPDSSLIARRLFTMPRFTVAAPSYLKRHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H   ++  L    +  +++  +            L+VN+  ++M   + G GIA 
Sbjct: 185 MHLAEHKCFSYAYLSTPNV--WHYTNSAGEQASVRPGGQLRVNNGEAVMPALIAGLGIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP++IV +   +  +  I++D       V+   P       +++A  +F+  K 
Sbjct: 243 LPEFIVGEAISSGEVEVILKDWKQAEGAVHLVTPPGGPRPARVEALADFLAAKL 296


>gi|226198957|ref|ZP_03794520.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225929057|gb|EEH25081.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 327

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 135/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 28  MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 87

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LR++     G+  +   +  F   +PD
Sbjct: 88  EGSAFLEDCQRIINDIQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPD 147

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 148 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPG 206

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L +HN +    L     +   W       +   R+S  ++ +    + ++C+ G G
Sbjct: 207 TLDDLARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHG 263

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 264 LAWRSWWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 316


>gi|28871413|ref|NP_794032.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854664|gb|AAO57727.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 307

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 7/292 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   + + +  F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++
Sbjct: 1   MELHNLNDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSM 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G  L+     V   L+  +  L      PSG+LR++  + LG+  +  +++  L  +
Sbjct: 61  TDDGQVLYERCVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIERCLKDW 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +   ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    +
Sbjct: 121 PSLSVDITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHPQ 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H  + F         +F      DR +       LQ++S  S+ Q  V G 
Sbjct: 181 PQTPDDLSEHQCLHFVSGGRLLPWNFR---VNDRSLSVTHGGRLQMDSAESLHQSAVAGL 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GIA LP Y++ D+     LV+++ +    +  +   YP     + K++ F +
Sbjct: 238 GIATLPSYVINDDLRSGKLVQLLAEYAEAAEPIRVIYPSKRHLSPKIRLFID 289


>gi|222110153|ref|YP_002552417.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221729597|gb|ACM32417.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 304

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 136/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  V  +G+FT AA+ L L + ++++ +  LE  + +KL  R  R +T+T 
Sbjct: 1   MDQIQAMRIFARVVEAGTFTRAADSLQLPKGTVTKHVQALEERLRVKLLNRTTRRVTVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +  T  +    +  +  + ++   P G+LR+     + + L+  NL +F   YPD
Sbjct: 61  DGAAFYDRTVRLLADFDDIEASMSQARANPRGRLRVDVGSSVARLLIVPNLAQFQERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ +D+  D  DC IR    +   SL+ R++  +     AAP YL+    P 
Sbjct: 121 IQIDLGVSDRTVDLIGDNVDCVIR-GGELADQSLVARRIGNLEFITVAAPAYLERFGVPA 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
              +L++ H  + +    P     +      D  + E    S L VN   + +   V G 
Sbjct: 180 HPLDLERSHRTVIY--FSPVSARRYPLEFHKDGEVIETSGPSHLAVNESNAYLNALVAGQ 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +  +  + +     LVR++ D   P   VY  YP     + K++AF ++
Sbjct: 238 GVGQITTFQAQQHFERGELVRVLPDWSHPVLPVYVVYPPNRHLSAKVRAFVDW 290


>gi|15597730|ref|NP_251224.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9948591|gb|AAG05922.1|AE004681_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 303

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 141/295 (47%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F  +   G+F  AA+ L L ++S+++ I  LE  +G++L  R  R ++LT 
Sbjct: 1   MDRFQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +         P G+LR+     LG+  +   L EF   YP+
Sbjct: 61  DGQAYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL  +++ +D+  + ADC +R+ + +  SSL+ R L  +     A+  YL+    P 
Sbjct: 121 LELQLSSNDRLVDLLREGADCVLRVGE-LHDSSLVGRHLADLPQVTCASAAYLERHGHPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
            + EL  H  + +    P     F++  +VD  +   P  S + VN+  + +  C  G G
Sbjct: 180 QLAELGGHLAVNYQS--PSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P Y V     + +L +++ + + PS  ++  YP   + + +++ F +++  
Sbjct: 238 LIQAPHYHVAAGLADGSLRQVLGEWLPPSLALHAVYPSQRQLSPRVRVFVDWLVE 292


>gi|330958541|gb|EGH58801.1| LysR protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 306

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 139/296 (46%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AA  LH+S++S+++ I  LE  + +KL  R  R + LT 
Sbjct: 1   MDRFDAMQAFAQVVETGSFTKAAGTLHMSKTSVTQLIQQLEARLRVKLLNRTTRRVNLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  ++  P G+LR+     +   LL   L  F   YPD
Sbjct: 61  DGAVYYERVVSLLADMDDAETSLSSAASLPRGRLRVDVPSPMASLLLMPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI + + ++ +D+  ++ DC +R    I   SL+ R++  + +  YAAP YL     P 
Sbjct: 121 IQIDMGVSDRIVDLIGEHVDCVVR-GGEITDQSLMARRVGDLQLGVYAAPDYLLRMGTPT 179

Query: 182 SIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              EL+   H ++ +          +      ++   + R   L V+   + +   + G 
Sbjct: 180 HPHELEDSAHRVVGYLWARTGKALPYAMRRDGEQVHVQGR-YTLAVDDGNAYIAAGLAGM 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LPDY+ +    N  LVR+ +D    S  +Y  +P     + K++ F ++I  
Sbjct: 239 GILWLPDYMARTHLQNGTLVRLFDDWRLDSMPMYVAFPPNRHVSLKVRVFIDWIMA 294


>gi|194365744|ref|YP_002028354.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348548|gb|ACF51671.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 297

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  VA++GSF  AA ++ +  ++ SR+I  LE ++G++L +R  R LTLT+ 
Sbjct: 2   IDLNDVALFVQVAKAGSFAEAARRIGMPSNTASRRIQQLEEQLGVRLLHRSTRKLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+  + E    L    +EL E S  P GK+R+A  +D         ++ FL  +P +
Sbjct: 62  GEGLYARSVEQIEALADATLELSEGSEVPVGKVRVAAPVDFFNWFQLEWVQSFLQAHPRV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ +L++   D+  D  D AIR    +   +LI RK+        A+P YL++   P +
Sbjct: 122 RLEFVLNDARADLVADGIDVAIR-GGAVTGPTLIARKVGNNRAVLVASPAYLESRGAPSA 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H+ I       +       L   D P           NS L++ + CV G GIA
Sbjct: 181 LEDLSTHDCIAVPSGSGRTQWR---LMGPDGPAEVEVRGRFSANSALALTKACVAGMGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LL + +V        LV+++ D       ++  Y    +      AF +F
Sbjct: 238 LLTEAMVAQPLREGKLVQVLPDYRIDGLELFVVYQSRRQLPRAASAFVDF 287


>gi|226942808|ref|YP_002797881.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226717735|gb|ACO76906.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 299

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 126/292 (43%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L++F  +   GSFT AA  L + +++ +  I  LE  +G +L  R  R +  T 
Sbjct: 1   MDRFDALQLFTRIVELGSFTRAAGALDIPRATATHAIKMLEERLGARLLERTTRQVRPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   L+  +  L  +   P G LR+         ++   ++EF   YP 
Sbjct: 61  DGQVFYERCKRILGDLDDAESALSTAMANPRGSLRLDLHGAHANLIILPRIQEFHRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  DC +R  +P + SSL+ R+L  +     A+P YL     P 
Sbjct: 121 IELVISSGDRLVDLVGEGIDCVVRAGQP-RDSSLVARRLALMPEVVCASPDYLDRHGRPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL  H  + F          F++L   +    E     + VN         + G G+
Sbjct: 180 HPEELAAHQAVGFFSSNHDIRYPFSFLIDGEMTKFEVG-GWISVNDAECYSTCALSGCGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P + V+++     L  ++ +  +P   V   YP   + + +++ F  ++
Sbjct: 239 IQVPRFRVEEHLRSGRLEEVLTEWPSPGLPVSALYPYHRQLSPRVRVFVEWL 290


>gi|209548041|ref|YP_002279958.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533797|gb|ACI53732.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 305

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 143/294 (48%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA   SF  AA+ L +S  ++SR +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEGLAMFAKVAEERSFARAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +Y + E  +   +E + +P G +R+A  +D G   L   L +F  L+P+I 
Sbjct: 66  LRLVDSAARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLPPILPDFFELFPEIS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +  +DI  D  D A+R+   +  SSL+ R+L  +     AAP YLK    P   
Sbjct: 126 IDLHMSDAVVDIVGDGFDAALRIA-VLPDSSLVARRLAPVDRFILAAPAYLKQYGLPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H+ + +     + +  +    +  +         L+  +  +++   + G GI  
Sbjct: 185 RELTAHHCLGYAYRARQDV--WRLRNSEGKEEVISPSGSLRATNSQALVPMALRGLGIIE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP+++  D   +  L  I+ D   P+  +YF  P A     K++   +F+  + 
Sbjct: 243 LPEFLAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLADFMMARL 296


>gi|320182581|gb|EFW57471.1| LysR family transcriptional regulator YhjC [Shigella boydii ATCC
           9905]
          Length = 323

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|198284575|ref|YP_002220896.1| LysR family transcriptional regulator [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665299|ref|YP_002427245.1| transcriptional regulator, LysR family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198249096|gb|ACH84689.1| transcriptional regulator, LysR family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517512|gb|ACK78098.1| transcriptional regulator, LysR family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 307

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 131/292 (44%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F   A++G+F+ A  +L  S + +S+++  LE ++ ++LF R  R + LT++G
Sbjct: 5   NISDLTIFVHAAKAGNFSTAGRELGFSAAVVSKRLQRLEDQLSVRLFNRSTRKVGLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ +     V   LE  +  +   S +P G LR+      G+  +   +  FL  +PD+ 
Sbjct: 65  AEYYDYCIRVLSDLEEAESLITVGSRQPKGTLRVTVPAAFGRLHIAPLVPVFLRRHPDLH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +DI  +  D A+R+ + ++ S+L+ R L        A P Y+     P   
Sbjct: 125 LCLHLSDNVVDIIEERYDVAVRIGE-MKDSNLVARNLCVDKRLVVATPSYIAKYGAPEQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L KHN + F       +  F+      +          + N+  ++ +  +   GIAL
Sbjct: 184 DDLIKHNALLFAHSTTSNLWRFS--DKFGKQHSVRVSGNFETNNCDALREAILADIGIAL 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            P + +  +     ++ ++ D +  SF V   YP       K++ F   +  
Sbjct: 242 RPTWDIWRDILSGRMIALLRDYVPYSFDVKVVYPSRRHLPSKVRVFIELLVE 293


>gi|53719799|ref|YP_108785.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|53724113|ref|YP_103228.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|76809711|ref|YP_334007.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121599157|ref|YP_993406.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124385771|ref|YP_001029158.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126452276|ref|YP_001066785.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167720210|ref|ZP_02403446.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167739212|ref|ZP_02411986.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167816424|ref|ZP_02448104.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167846334|ref|ZP_02471842.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167894914|ref|ZP_02482316.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167903301|ref|ZP_02490506.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167911545|ref|ZP_02498636.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167919553|ref|ZP_02506644.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|242317300|ref|ZP_04816316.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254206516|ref|ZP_04912868.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|52210213|emb|CAH36192.1| putative LysR-family regulatory protein [Burkholderia pseudomallei
           K96243]
 gi|52427536|gb|AAU48129.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76579164|gb|ABA48639.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|121227967|gb|ABM50485.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124293791|gb|ABN03060.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126225918|gb|ABN89458.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|147753959|gb|EDK61024.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|242140539|gb|EES26941.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 300

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 135/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LR++     G+  +   +  F   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L +HN +    L     +   W       +   R+S  ++ +    + ++C+ G G
Sbjct: 180 TLDDLARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|240947924|ref|ZP_04752358.1| LysR family transcriptional regulator [Actinobacillus minor NM305]
 gi|240297787|gb|EER48234.1| LysR family transcriptional regulator [Actinobacillus minor NM305]
          Length = 296

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 9/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA +GSFT  AEQL +S+  ISR ++ +E  +  +LF R  R + LT+
Sbjct: 1   MDKLTAIKVFLTVAETGSFTATAEQLEISKPMISRYVALMEEWLNARLFQRSTRKVALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       + +     + E+     +  G LR+ ++   G   L   +  FL L+P 
Sbjct: 61  AGEQAVLFCQRIANLTAEMEQEMMVQQSELRGALRVTSSQTFGTYHLVQMVNRFLQLHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+L+++ +D+  +  D AIR+       + I RKL   H    A P YL     P 
Sbjct: 121 LNIQLLLNDQQMDLISERIDLAIRITN-TPDPNFIARKLADCHSLLVATPDYLAKFGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H+ ++  ++  K  +        ++ +     S    N   +++   +  +GI
Sbjct: 180 QPEELYQHHYLSHHNINRKAWK----CTQGEQEVLLDLNSRFTTNDTQALLNSVLDSNGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y+++       L  ++ D   P+F++Y  YP   K    ++   +F+  
Sbjct: 236 AMLPKYMLETELQQGKLQAVLSDWQLPAFSIYAMYPSRDKLPLAVRKLIDFLVE 289


>gi|148975237|ref|ZP_01812161.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965161|gb|EDK30411.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 305

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 134/296 (45%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AEQ +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSKVAEQNNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  ILHGAKNVKQATQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+  D  D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLDNRFVDLVEDGLDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPMLPKD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +HN + +        E + +L + D                  ++  ++ +  + G G
Sbjct: 183 LVQHNCLQYAYQTTGASE-WQFLHSKDGCTDNDKYIVRVSGSFSTDNATALRKAALGGHG 241

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A +P  +V  +     LV I  D++     +Y  YP   +   K+K     I  +
Sbjct: 242 VAYVPRCLVYHDIRNGQLVDIFPDLVGKKLGIYAVYPFTRQPPNKIKLLIEHIRTR 297


>gi|149927560|ref|ZP_01915813.1| LysR-family transcriptional regulator [Limnobacter sp. MED105]
 gi|149823614|gb|EDM82842.1| LysR-family transcriptional regulator [Limnobacter sp. MED105]
          Length = 304

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 129/297 (43%), Gaps = 6/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L  F  V     F+ AA  L + +S ISR+I+ LE  +  +L YR  R L +TE 
Sbjct: 1   MDLNDLYYFAKVVEHQGFSAAARALGIPKSKISRRIAELEKRLNTQLLYRSTRKLHITEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +  + E+ Q  ++ +  +P G +R+   I L    +   L EFL+ +P +
Sbjct: 61  GKTYYQHCKAMLIEAESAQEVIEHNHAEPRGLIRMTCPIALLHAHIGDMLAEFLVKHPQV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + +   N+ +D+  +  D AIR+R  P+ SS L+ + L    +   A+P  +     P 
Sbjct: 121 TVHMEASNRRVDVVAEGVDLAIRVRPLPLDSSDLVLKVLSDRGLCLVASPCLINKMGAPK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             ++L     +  G    +    F W  T      I  P    L     +++    + G 
Sbjct: 181 HPKDLIHWPSLGLGQTQGQVQTAFEWCLTHASGERIVIPHSPRLVTTDMVALRASAMAGV 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+  LP+ +V     N  LV+++ D       ++  +P        ++A  +F+  K
Sbjct: 241 GVVQLPNLMVPKQVANGELVKLLPDWSPRREIIHVVFPSRRGMLPAVRALIDFLCEK 297


>gi|311105010|ref|YP_003977863.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310759699|gb|ADP15148.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           53 [Achromobacter xylosoxidans A8]
          Length = 307

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 148/296 (50%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +   VF  VA + SF  A  QL +S S+I + ++ LE ++G++LF+R  R +TLT 
Sbjct: 1   MDSLNGFVVFVQVAETRSFVAAGRQLGVSASAIGKSVARLEAKLGVRLFHRSTRSVTLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G      +  +  ++E  ++EL  ++  P G+LR++    L   L+   L EF+  YP+
Sbjct: 61  EGMLFLERSRRILAEIEAAELELSRAAGAPRGRLRVSLP--LVSGLVLPILGEFMREYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++ +D+  +  D  +R  +P   S L  R+L +  +   A+P YL +   P 
Sbjct: 119 IELDLDFTDRMVDVIEEGFDAVVRTGEP-ADSRLSARRLGSFQILLVASPAYLASRGTPR 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H+ + +       +E +        P  +  +S +  N+  +   + + G GI
Sbjct: 178 TPADLLHHSCLHYRFPSSGKLETWALRQAEGEPELQLPVS-MICNNIETRACFALQGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LPD+ +++   + +LV+++      +   +  +P + + + K++A  +F+  + 
Sbjct: 237 AYLPDFAIREPLADGSLVQVLAGQAERTNVFHVLWPASKQPSPKVRALVDFLCSRV 292


>gi|313499419|gb|ADR60785.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 308

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 137/307 (44%), Gaps = 13/307 (4%)

Query: 1   MSFDWDK-----LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D      + +F + A  GSFT A     ++ +++SR IS LE  +G +LF R  R
Sbjct: 1   MQRHFDDVLLGSIELFCLAAELGSFTAAGLAAGVTPAAVSRSISRLEERLGSRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LTE G   +    +   +L   +  +     +PSG LR +     G + +   L EF
Sbjct: 61  SIRLTEGGRGYYEQCRQALTQLVEAERVVTGQQQEPSGTLRFSLPTTYGHHRILPLLPEF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP +Q+ + L N++ID   +  D AIR+R     S+LI R L    +   A P YL+
Sbjct: 121 RRRYPKVQVDIHLGNRNIDFVGEGYDVAIRVRAQ-PDSTLIARPLEDARLVVVATPDYLE 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQ 233
           +  EP S++EL +H+ I F   +P       WL   +    E       +  +  L  + 
Sbjct: 180 HAGEPQSLEELAQHDCIQFE--LPSSGRRIAWLFDEEGREREVLTEGGYVCSDDVLGGVT 237

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     +IV+      +LV ++      S      YP+      +L+AF +FI
Sbjct: 238 LAKHGAGLFQTYRFIVERELAEGSLVEVLRPFAGRSRPFTLLYPQGRHMPLRLRAFVDFI 297

Query: 291 FLKARDW 297
             K R W
Sbjct: 298 MDKRRQW 304


>gi|319945066|ref|ZP_08019328.1| contact-regulated protein A [Lautropia mirabilis ATCC 51599]
 gi|319741636|gb|EFV94061.1| contact-regulated protein A [Lautropia mirabilis ATCC 51599]
          Length = 299

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/299 (29%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGSF+ AAE L L+ S +SR +  LE ++   L  R  R L LT
Sbjct: 1   MKSHSDELAVFVQVVESGSFSRAAESLGLANSVVSRTVKRLEEKLSTNLLNRTTRQLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+GS+  R   ++ H ++  + EL  S   P G LR+ +      + +   ++ F   YP
Sbjct: 61  EEGSRFFRRARQILHDIDAAEAELLSSGGTPQGILRVDSATPTLLHRIAPLVRPFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +QL      ID+     D AIR    +  S+L  R L    +   AAP YL     P
Sbjct: 121 KVSLQLTSSEGYIDLIERRVDIAIRAGS-LHDSALRARHLFDSRLKLVAAPDYLARYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L +H LI F +  P+ + ++ +  +   P        L  NS  +I Q C+ G+G
Sbjct: 180 ESVADLSRHVLIGFSE--PRTLNNWPFADSGHAPYAA--APQLSANSGETIRQLCLSGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L D++V  +    +L  ++ D     +   +  Y      + K++AF +F+    R
Sbjct: 236 IACLSDFVVASDIAAGDLHELLPDRALNEAKPFHAVYYGDTTVSPKIRAFVDFLAEHWR 294


>gi|319796234|ref|YP_004157874.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598697|gb|ADU39763.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 300

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 153/298 (51%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R F  VA  GSF+ AA++L +S++++S+ ++ LET  G++L  R  R ++LT+
Sbjct: 1   MDSLDLIRTFREVAAHGSFSQAAKKLDMSKATVSKYVAELETRFGVRLLNRSTRSVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L   ++ V   +E TQ ELQ+ + +P+G+LRI+    +G       L +F+  YPD
Sbjct: 61  AGQLLLDRSTPVLEMVELTQAELQDRASQPAGRLRISAPHGMGNGEFPNLLADFMRYYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L N+ +D++ +  D  IR   P++ ++LI RKL  + M   A+P Y K   +P 
Sbjct: 121 VSISLQLTNRTVDLAEEGIDVDIR-SGPVEDANLIVRKLRLMQMVVCASPVYWKKHGKPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  +T   L  + +  F+       P+     S +       +++  + G G+
Sbjct: 180 HPRDLAGHEALTHSLLGAQPVWRFD---DGGEPLDVHVKSRMDCTEGAPLIRVAMRGFGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +V+   ++  LV +++D       +   Y +   N+  L+A  +F+  +  D
Sbjct: 237 IYLPSILVQSHIEHGELVPVLQDYTRKDMWLSAAYLQRRHNSAALRALLDFLQTRVGD 294


>gi|207723659|ref|YP_002254057.1| transcription regulator protein [Ralstonia solanacearum MolK2]
 gi|206588862|emb|CAQ35824.1| transcription regulator protein [Ralstonia solanacearum MolK2]
          Length = 299

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 133/291 (45%), Gaps = 8/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F      GS + AA +L LS     RQ+  LE  +GIKL  R  R  +LT+
Sbjct: 1   MDRLAAMQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGALGIKLLNRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +  ++E  Q ++ ES   P G+LRI+  I  G   L   L EF+  +PD
Sbjct: 61  GGRLFYERAKNILAEMEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L N+ +D+  +  D A R    +  S L+ R+L    +   A+P YLK   +P 
Sbjct: 121 ITVELSLTNRTVDLVDEAFDAAFRTGD-LPDSGLMARRLAPHRLILCASPAYLKMRGQPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L KH  + F     +    F+     D  +  P       +S  ++    V G GI
Sbjct: 180 TPEDLRKHECLVFAHTSLRTQWSFD---GPDGSVKVPIKGRFLADSGEALRAAAVAGVGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L P  ++ ++     L RI++        ++  Y    + T KL++F +F
Sbjct: 237 ILQPAELLAEDIQTGLLTRILKRYEPTPRPLHVLYAPDRRMTQKLRSFLDF 287


>gi|260778230|ref|ZP_05887123.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606243|gb|EEX32528.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 294

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 136/301 (45%), Gaps = 13/301 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +  F  VA S  F+ AA+QL  S S +SRQ+S LE+ VG+ L  R  R ++LT+
Sbjct: 1   MDSFEGINEFVAVAESQGFSSAAKQLGCSTSHVSRQVSRLESRVGVALLARTTRMVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R   E+ + L+    +L    ++ SG LR++      +N +   L  F   YP+
Sbjct: 61  AGQIYYRQCKELVNGLQHANEQLSSQHIQLSGTLRVSAAGAFAENYVAPALMAFAKKYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L  + + ++   D  D AIR  + +  S L+ RKL    M A A+  YL+   +P 
Sbjct: 121 LTVELDFNTRMVNFIEDGIDFAIRYGR-LNDSGLVARKLADRPMAAVASRDYLEQFGQPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             ++L +H+ I           D        +P+   R+    + N+  ++++ C  G G
Sbjct: 180 HPEQLKQHSCII-------ANNDHWLFEHEGKPLNAVRVHGRWRSNNSTAVIEACEQGLG 232

Query: 241 IALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LP        +   L  ++E       + +  Y        K +   +++     DW
Sbjct: 233 IAYLPKSSFNHALEEGKLTPVLEPFWGKGSSSWIVYQNRRFLPQKARMAIDYLVSYFSDW 292

Query: 298 K 298
           +
Sbjct: 293 Q 293


>gi|167822985|ref|ZP_02454456.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|226192810|ref|ZP_03788423.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225935060|gb|EEH31034.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 294

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 136/287 (47%), Gaps = 7/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++         +   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLP--ALSAPVLPVLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVVDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +           EP  S +  N+  + + + + G G+A +PD+ V
Sbjct: 186 TCLLYRFPTTGKLERWPLRPAPGDADVEPPQS-MICNNVETRVCFALRGRGLACVPDFAV 244

Query: 250 KDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +D      L  +++  I    T +  +P     + KL+AF +FI  +
Sbjct: 245 RDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFIVGR 291


>gi|304397977|ref|ZP_07379853.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304354688|gb|EFM19059.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 299

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  GSFT AAE L + + S+SRQI  LE ++  +L +R  R + LT+
Sbjct: 1   MDKIHAMQVFVRVAEMGSFTRAAESLGVPKGSVSRQIQALENQMATRLLHRTTRRVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   ++      Q      SGKLR+  ++ +    +   L EFL  YP 
Sbjct: 61  DGLVYYDRCLDLLSMIDDMDSLFQHEPASLSGKLRVDMSVAMATGFILPRLPEFLQHYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+L   ++ +D+  +  DC +R+ + ++ S LI RK+ T  +   A+P YL     P+
Sbjct: 121 IEIELSSSDRQVDVIREGFDCVLRVGE-LKDSGLIARKIGTHTLINCASPGYLSRFGMPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL +H ++ +   + +    F +               + VNS  +    C+ G GI
Sbjct: 180 RLEELSQHAMVHYSQQLGQASPGFEYFDGRQCHYVHTG-GVVTVNSTETYRAACLAGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   ++   +   LV ++         ++  YP       +++ F  ++    +++
Sbjct: 239 IQVPAAGIQTLLERGELVEVLHRFPARPMPIHLLYPHRRNVARRVRVFMEWLSQVLQEY 297


>gi|293608489|ref|ZP_06690792.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829062|gb|EFF87424.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 301

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 148/293 (50%), Gaps = 5/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEEQLGVALFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGALFYEHSRRALSEIQNAAALLDQGKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++ +D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRTVDLVEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNKAGPL 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++LD H  I   D     M+ +      D P+     + L +N   +I    + G+G
Sbjct: 181 QNIEDLDHHATI--ADPHFGQMQKWRLQKENDEPLFIKPKAKLLLNDLQAIKNAALAGAG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LPD++++       LV+++E + + +F ++  +P       K +   +++
Sbjct: 239 IAWLPDWLIQNELQEGKLVQVLETMSSIAFPIHLVWPTLPFMPLKTRLAIDYL 291


>gi|260770243|ref|ZP_05879176.1| transcriptional regulator LysR family protein [Vibrio furnissii CIP
           102972]
 gi|260615581|gb|EEX40767.1| transcriptional regulator LysR family protein [Vibrio furnissii CIP
           102972]
          Length = 292

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 137/294 (46%), Gaps = 9/294 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   GSF  AAE+L +S    S+ IS LE ++G++L  R  R L +TE G   +   
Sbjct: 2   FVAVMELGSFAKAAERLAISSGQASKLISRLEQDLGVQLVKRSTRSLAVTEVGQAYYERI 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             V   L+     ++ +S  PSG+LRI+  +  GQ+ L  +L +F   +PDI + +   +
Sbjct: 62  KRVLDDLDALDDAIRNASRLPSGRLRISAPVTFGQSQLAPSLIDFSKQFPDITLDVKFSD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +++  +  D A+R+ K +  SSLI RKL  + +   A+PHYL     P  I++L +H+
Sbjct: 122 RSVNVVDEGFDLALRIGK-LDDSSLIARKLCDVRVITLASPHYLSQHGTPTHIRDLAQHH 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            I   D   +    + +L              L+ ++    ++      GI  LP ++  
Sbjct: 181 CII--DTNFRDPYHWPYLNEQGHVHDFAVNGRLKFSNAEVCLKAACADLGITRLPTFVAA 238

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298
                  LV I++    P   +Y  YP A       +AF +F+   F    DW+
Sbjct: 239 QALKEQQLVAILQQYEVPPLGLYALYPPAKHLAQSSRAFIDFLVNRFANGADWE 292


>gi|237811080|ref|YP_002895531.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|237503088|gb|ACQ95406.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 294

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 136/287 (47%), Gaps = 7/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++         +   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLP--ALSAPVLPVLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +           EP  S +  N+  + + + + G G+A +PD+ V
Sbjct: 186 TCLLYRFPTTGKLERWPLRPAPGDADVEPPQS-MICNNVETRVCFALRGRGLACVPDFAV 244

Query: 250 KDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +D      L  +++  I    T +  +P     + KL+AF +FI  +
Sbjct: 245 RDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFIVGR 291


>gi|302131086|ref|ZP_07257076.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 307

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 7/292 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   + + +  F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++
Sbjct: 1   MELRNLNDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSM 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G  L+     V   L+  +  L      PSG+LR++  + LG+  +  +++  L  +
Sbjct: 61  TDDGQVLYERCVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIERCLKDW 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +   ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    +
Sbjct: 121 PSLSVDITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPKYLAEHPQ 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H  + F         +F      DR +       LQ++S  S+ Q  V G 
Sbjct: 181 PQTPDDLSEHQCLHFVSGGRLLPWNFR---VNDRSLSVTHGGRLQMDSAESLHQSAVAGL 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GIA LP Y++ D+     LV+++ +    +  +   YP     + K++ F +
Sbjct: 238 GIATLPSYVINDDLRSGKLVQLLAEYAEAAEPIRVIYPSKRHLSPKIRLFID 289


>gi|296160079|ref|ZP_06842898.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295889553|gb|EFG69352.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 352

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 132/295 (44%), Gaps = 6/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE G+
Sbjct: 4   LQSMRVFVKVADLGSFVGAAGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   LE  +  +   + +P G LRI   +  G + L   ++ +   YPD+  
Sbjct: 64  TYLERVRHILDDLEGVEQMVVARNQEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D  I + + ++ +S++ R+L T +M   A P YL     P   +
Sbjct: 124 DVTLADRHVDLVEEGFDVGILVARHMRGASIVTRRLTTGYMTVCATPAYLAQHGTPTRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H  +       +   +       D  +     + +  N+   + Q+ +LG G+A+L
Sbjct: 184 HLLAHPCL---SRPAEQGGEERVFTGPDGEVRVRPTNAIVANNAEMLRQFALLGMGVAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P Y++  +     LV ++ +   P   +   YP  L    K++ F + +    + 
Sbjct: 241 PSYLIGRDLASGRLVPLLSNYRLPQIEITIAYPSRLHLPAKVRTFIDHLVEHFQQ 295


>gi|193077071|gb|ABO11829.2| putative transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 311

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G 
Sbjct: 10  LNEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I I
Sbjct: 70  QVYQRCLDMVNAAQAVMESSGQFHVEPEGVIRMSVPKAVGHFMIHPHLPEFLERYPKIDI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    
Sbjct: 130 QMLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLSKHGTPNHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I  G+        F      ++ I          N     +   +   GIA L
Sbjct: 189 DLKQHECIYLGEQASDSKWKFQ---QGNKSISVAVRGRYAANHTGVRLSAALQHLGIASL 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++ +       LV+++ D    ++    ++  YP       KL     ++  K 
Sbjct: 246 PYFVARHALQQGTLVQVLPDWYFKTYYSGGLWLLYPPTRHVQPKLSVLIQYLADKL 301


>gi|187476841|ref|YP_784865.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115421427|emb|CAJ47932.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 340

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 146/293 (49%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++VF  V  + SFT AAE L L +++++  I  LE  +G++L  R  R ++LT 
Sbjct: 1   MDRFQAMQVFVRVVEANSFTRAAESLTLPRTTVTTIIQNLERHLGVRLLNRTTRRISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++  + +  ++  T+  LQ+++ +P G+LRI     +GQ +L   L +F   YPD
Sbjct: 61  DGAAYYKHATRILAEVYETEACLQDAAARPQGRLRIDVPASVGQLILIPALCDFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + + ++ +D+  +  DC IR  + ++ SSL+ R++ T+     A P YL+    P 
Sbjct: 121 VELVIGMGDRKVDLVQEAVDCVIRSGE-LEDSSLVARRIGTVQTVTCATPSYLERYGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S+Q+L++H+ + +            W   VD       +   + VN + + +   + G G
Sbjct: 180 SLQDLERHHAVHY---FSSGGRQCAWTFMVDGKEQLVDVAGTVSVNDWSAHLTCGLNGFG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     Y+   +     LV ++      S  +   Y +  + + K++ F +++
Sbjct: 237 LIQTARYMALPHLLSGALVEVLPQWKPKSVPISLLYLQNRQLSPKVRVFSDWV 289


>gi|295676718|ref|YP_003605242.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436561|gb|ADG15731.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 309

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/300 (29%), Positives = 138/300 (46%), Gaps = 12/300 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +   GSF  A E L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERVLNGMGVLTAIVDCGSFAAAGEALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +     +   LE       + +    G+LR+       + +L   L  F+ 
Sbjct: 61  TLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGSFID 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+Q++LI  ++  D+  D  D AIR   P   S+L+ RKL+   +   AAP YLK  
Sbjct: 121 KHPDLQLELITRDQLGDMVADGFDVAIRFGDP-PVSTLVARKLLDTRILTVAAPSYLKKH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQY 234
            +P +  EL+  +H  I F D  P     F W     R  +       L VN   ++   
Sbjct: 180 GKPENPAELEDGRHVCIKFRD--PLTGYPFTWEFHRGRKKLALTPQGRLTVNDVGTLHSV 237

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           C+ G GIA +     +    +  L+ +  D     + +Y  YP       K++AF +FI 
Sbjct: 238 CIAGQGIAQILALGAESLLASGKLIELFPDWGDEVYPLYALYPSRHHPPAKVRAFLDFIL 297


>gi|296162833|ref|ZP_06845615.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295886929|gb|EFG66765.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 309

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/300 (29%), Positives = 137/300 (45%), Gaps = 12/300 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +  SGSF  A   L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERMLNGMGVLTAIVDSGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT++G + +     +   LE       + +    G+LR+       + +L   L  F+ 
Sbjct: 61  VLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFID 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+Q++LI  ++  D+  D  D AIR   P   S+LI RKL+   +   AAP YLK  
Sbjct: 121 RHPDLQLELITRDQLGDMVADGFDLAIRFGDP-PVSTLIARKLLDTRILTVAAPSYLKKH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQY 234
             P++  +L+  KH  I F D  P     FNW     R  I       L VN   ++   
Sbjct: 180 GHPVNPADLESGKHVCIKFRD--PLTGYPFNWEFHRGRKKIVVTPQGRLTVNDVGTLHSA 237

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           C  G G+A + +   +    +  LV +  D     + +Y  YP       K++AF  FI 
Sbjct: 238 CAAGQGVAQILELGAESLMASGKLVALFPDWSDEVYPLYALYPSRHHPPAKVRAFFEFIV 297


>gi|260555370|ref|ZP_05827591.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411912|gb|EEX05209.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 311

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++  F  V  S SF+  A QL  + S++SR I+ LE  +G +L YR  R L L+E G 
Sbjct: 10  LNEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTRKLRLSESGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I I
Sbjct: 70  QVYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLGRYPKIDI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    
Sbjct: 130 QMLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLSKHGTPNHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I  G+        F      ++ I          N     +   +   GIA L
Sbjct: 189 DLKQHECIYLGEQASDSKWKFQ---QGNKSISVAVRGRYAANHTGVRLSAALQHLGIASL 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++ +       LV+++ D    ++    ++  YP       KL     ++  K 
Sbjct: 246 PYFVARHALQQGTLVQVLPDWDFKTYYSGGLWLLYPPTRHVPPKLSVLIQYLADKL 301


>gi|326404435|ref|YP_004284517.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325051297|dbj|BAJ81635.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 304

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 137/290 (47%), Gaps = 8/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F      GSF+ AAE      S++SR ++ LE ++G+ LF+R  R L LTE G + +
Sbjct: 1   MRLFGRAVELGSFSKAAEAQGAKVSTVSRAVAALEADLGVALFHRSTRRLHLTEPGEQFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +  +     +P G LR+      G+  +   + +FL LYP ++++L 
Sbjct: 61  AQVQAILRNLDEARDSVAAMQARPQGLLRLNLPGAFGRRHVVPFIPDFLKLYPGLRLELS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+    AD AIR+  P+  S+LI RKL        A+P YL       + ++L 
Sbjct: 121 FTDVRMDLLASGADLAIRIG-PLIDSTLIARKLAGHRRVVCASPSYLAGAPPLAAPRDLL 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN + +                 +     P    L+ +   +++   + G GIALLP +
Sbjct: 180 RHNALIYTLQPTDRWFFRRGTEAGEPEEEVPIAGILRSDDSEALLDAALAGVGIALLPVW 239

Query: 248 IVKDN---PNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V ++     LVR++ D      T    +Y  YP   + + K++AF +FI
Sbjct: 240 LVGEDIARGRLVRLLPDWFSMISTRPGGIYGIYPPHARISPKVRAFLDFI 289


>gi|170691056|ref|ZP_02882222.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170144305|gb|EDT12467.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 348

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 9/290 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  GSF  A ++L + +S++SR +  LE ++  +LF R  R  +LT +G   ++  
Sbjct: 47  FLAVANEGSFAKAGDRLGIGRSAVSRNVQKLEAQLDARLFLRTTRSTSLTREGELFYQNC 106

Query: 71  SEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                ++     +++E  +  P G LRI +T   G+ ++   L+ F   YPDI ++L+L+
Sbjct: 107 HPGVERIVQALEDMRELRNGPPRGHLRICSTPGFGRKIVAPLLRGFRSRYPDIALELLLN 166

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D   D  D   R  + ++ S ++ ++L+ + M   A+P Y K    P  + +L +H
Sbjct: 167 DRPADFIADRVDVGFRDGR-MEDSEVVAKQLIPMQMIVCASPQYAKKHGVPRHVDDLAQH 225

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             I F     +     +W   VD  I +    +    N    I+Q  + G GIA LP Y 
Sbjct: 226 RCINFRSASGRVS---DWEFKVDGLIQKQLPRAQHTFNDMDLIVQAVLDGEGIAQLPAYQ 282

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V D      LV  +          Y CY        +++ F +++  + R
Sbjct: 283 VCDLLRKERLVSCLAQYAPDDRGHYVCYLSRKHLPARIRVFIDYMAEQTR 332


>gi|167561666|ref|ZP_02354582.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167568903|ref|ZP_02361777.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 308

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 132/294 (44%), Gaps = 8/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L  F +VAR GS + AA  L ++  + +++++ LE  +G +L  R  R  +LT +G 
Sbjct: 6   IDDLTFFVLVARHGSLSAAARVLDVTPPAATKRLALLENRLGARLVNRTTRSFSLTSEGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R  + +   +   +  ++ S   P G LR+  T+  G+  +   + EF  L+P +++
Sbjct: 66  TYLRYATRIVADIRQMEDAVRASRSVPRGLLRVNATLGFGRTAIAPLVSEFAKLHPQVEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ +D+     D AIR  +P     +  R++++      A+P YL+    P S+ 
Sbjct: 126 QLDVTDRPVDLVEGGYDLAIRFGEP-PDKRINARRIMSNRRFLCASPAYLQRHGAPASLA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I              W    D  I   ++   L  N    ++ + + G GI +
Sbjct: 185 DLAAHRCIVHRQNDDAHG---VWRFVRDGEIEVVKVRGALSSNDGDIVLGWALDGHGILI 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             ++ +    ++  L  ++ +   PS  ++  YP     + + +A  +F+  + 
Sbjct: 242 RSEWDLAKYLESGRLRLVLPEYALPSADLFVYYPSRQNQSARARALIDFLAGRL 295


>gi|15804065|ref|NP_290101.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 EDL933]
 gi|15833655|ref|NP_312428.1| transcriptional regulator LYSR-type [Escherichia coli O157:H7 str.
           Sakai]
 gi|168746941|ref|ZP_02771963.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168753333|ref|ZP_02778340.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168759604|ref|ZP_02784611.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168765928|ref|ZP_02790935.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168772525|ref|ZP_02797532.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168779664|ref|ZP_02804671.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168785386|ref|ZP_02810393.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|168797351|ref|ZP_02822358.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|195935049|ref|ZP_03080431.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808869|ref|ZP_03251206.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208812456|ref|ZP_03253785.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208821989|ref|ZP_03262309.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209396325|ref|YP_002273000.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217324528|ref|ZP_03440612.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|261224836|ref|ZP_05939117.1| transcriptional regulator, LysR family protein [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261254267|ref|ZP_05946800.1| transcriptional regulator, LysR family protein [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284893|ref|YP_003501711.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|12518233|gb|AAG58662.1|AE005577_7 putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EDL933]
 gi|13363875|dbj|BAB37824.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. Sakai]
 gi|187771430|gb|EDU35274.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188018447|gb|EDU56569.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|189002420|gb|EDU71406.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189358954|gb|EDU77373.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189364423|gb|EDU82842.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189369864|gb|EDU88280.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189374461|gb|EDU92877.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|189380120|gb|EDU98536.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|208728670|gb|EDZ78271.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208733733|gb|EDZ82420.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208742112|gb|EDZ89794.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209157725|gb|ACI35158.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209755508|gb|ACI76066.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209755510|gb|ACI76067.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209755512|gb|ACI76068.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209755514|gb|ACI76069.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209755516|gb|ACI76070.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|217320749|gb|EEC29173.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|290764766|gb|ADD58727.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|320191432|gb|EFW66082.1| LysR family transcriptional regulator YhjC [Escherichia coli
           O157:H7 str. EC1212]
 gi|320639837|gb|EFX09431.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. G5101]
 gi|320645337|gb|EFX14353.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H- str. 493-89]
 gi|320650648|gb|EFX19114.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H- str. H 2687]
 gi|320655842|gb|EFX23765.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661624|gb|EFX29039.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320666647|gb|EFX33630.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326337481|gb|EGD61316.1| LysR family transcriptional regulator YhjC [Escherichia coli
           O157:H7 str. 1044]
 gi|326340007|gb|EGD63814.1| LysR family transcriptional regulator YhjC [Escherichia coli
           O157:H7 str. 1125]
          Length = 323

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL  +L EFL  +P 
Sbjct: 85  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPHLSEFLYQHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 NPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|37675914|ref|NP_936310.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37200454|dbj|BAC96280.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 305

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LT+
Sbjct: 5   QINLADIRSFVLIAQLGNFTKAAEALGVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G  L        H ++   +   +      G++RI      LG+ ++   + +F+  YP
Sbjct: 65  AGKALFAQCETALHSIDQAVLAAVDDIEAVRGEIRINCVGGYLGEEVIAEVVGQFMQQYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L   +  +D+  D  D A R+ K ++ S  + RKL+ + M  YA+P YL     P
Sbjct: 125 QVRVDLDFSSHRVDLIEDEFDIAFRMGK-LEDSGFVARKLIDVEMGTYASPSYLATHGRP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +ELDKH  +T G +     +      T D  +       L+  +   +++  + G+G
Sbjct: 184 EHPKELDKHACLT-GSVTRWTFQHRQTKQTSDCQV----RGKLRCKNGRVMLKGALAGNG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P        +   L  + ED   PS      Y        +++ F  F
Sbjct: 239 IIRVPTLYCMSELEQGLLQEVFEDWHIPSVAFSALYHRDRYQPKRIRTFIEF 290


>gi|307263857|ref|ZP_07545462.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306870846|gb|EFN02585.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 297

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 133/302 (44%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF +VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+
Sbjct: 1   MDRITAIQVFLMVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       + +      +  G L+IA+    G   L   ++ FL  +P 
Sbjct: 61  AGEQAVEYCKKMTELTSAIEQDFLTKQGELRGSLKIASNAAFGSTHLLNAIRTFLAKHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL       
Sbjct: 121 LNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLARHGTIH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL  H  +   ++  K            +       S L +N   +++ + +   GI
Sbjct: 180 SPQELANHRYLAHANVNRKEWT----FIKDGQETVLELTSQLTINDTGALLNFTLADGGI 235

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--- 295
           A+LP Y ++       L  ++ D   P++ VY  YP   +    +++F +F+  +     
Sbjct: 236 AMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLPKTVRSFVDFLVEEFEGKG 295

Query: 296 DW 297
           DW
Sbjct: 296 DW 297


>gi|299069026|emb|CBJ40275.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 298

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 126/288 (43%), Gaps = 3/288 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  V R GSFT AA QL +SQS++S  I  LET +G++L  R  R ++ TE G
Sbjct: 5   NFSALLAFVTVTREGSFTRAAAQLGVSQSALSHAIRTLETSLGVRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +  S    +++T    L E   KPSG +RI  T    +++L   + +FL  YPDI+
Sbjct: 65  EHLFQKISGPMEEIDTEVQMLSEFRDKPSGTIRITATDYAIRSILWPKVTKFLTQYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D   +DI+    D  +R  + +    +  R          A   Y      P + 
Sbjct: 125 VELICDYGLVDIAAQRYDAGVRFGEQLAQEMIAVRLGPDERFALVATKGYFAKHPAPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H  +         +  + +     R +       L  N    +++  + G G+  
Sbjct: 185 QDLVDHQCVNLRLPTHGGLYAWEFAKKGGRGLKVRVSGQLTFNGIYDVLEASLAGFGLCY 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P+ +         LVR++E+        +  YP   + +  ++ F +
Sbjct: 245 VPEAMALPYIAKGRLVRVLEEWCPLWSGYHLYYPSRRQPSRAMRLFID 292


>gi|15964182|ref|NP_384535.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15073358|emb|CAC41866.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021]
          Length = 296

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +G+FT A+  L++ +++++  I GLE  +  KL  R  R + +T  G+  +
Sbjct: 1   MRAFLRVVETGNFTRASASLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+     L  +   P G+LR+ T       ++   L EF   YPDIQI L 
Sbjct: 61  ERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHKKYPDIQIDLG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID   +  DCAIR    +   SLI R++  +   A A+  +L+    P    +L+
Sbjct: 121 VSDRTIDYLAENVDCAIRAG-TLTDQSLIARRITEMKFVACASRDFLERHPVPQHPSDLE 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALLPD 246
           K N    G  +PK  +   +         E      +  N   + +     G G+   P 
Sbjct: 180 K-NCYVVGYFLPKTGQQMPFHFRRGNEEIEVSGRYTVAANESTTYLAAARAGLGVIQAPL 238

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++V+++     +V ++ D       +Y  YP     + +L+ F +++ 
Sbjct: 239 FMVREDLRNGTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWVV 286


>gi|170695897|ref|ZP_02887037.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170139195|gb|EDT07383.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 312

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 13/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YP+
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQQRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+  +  D ++ L   +  S L+ ++L +      A+P YL+    P 
Sbjct: 121 VHVELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIVCASPAYLEKHGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
           +  +L  H  +    ++        W  T D P GE  I    +  QVN   ++      
Sbjct: 181 TPSDLASHACL---QMVTPVFPPDKW--TFDGPNGEETIALGPATFQVNVAEAMAVAVTS 235

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GI L+P Y         +LVR++ D  +    +Y  YP       K++ +   +  + 
Sbjct: 236 GMGIGLIPIYSAISGLRKGDLVRLLPDYTSQEMNLYALYPSRQYLDAKIRTWIEHLRDEL 295


>gi|86144913|ref|ZP_01063245.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|218677137|ref|YP_002395956.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
 gi|85837812|gb|EAQ55924.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|218325405|emb|CAV27516.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 305

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AEQ +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSKVAEQNNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  MLHGAKNVKQAAQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+  D  D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLNNRFVDLVEDGLDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPMQPKD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +HN + +        E + +L + D                  ++  ++ +  + G G
Sbjct: 183 LVEHNCLQYAYQTTGASE-WQFLHSKDGCTDNDKYIVRVSGSFSTDNATALRKAALGGHG 241

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A +P  +V  +     LV I  D++     +Y  YP   +   K+K     I  +
Sbjct: 242 VAYVPRCLVYHDIRNGQLVDIFPDLVGKKLGIYAVYPFTRQPPNKIKLLIEHIRTR 297


>gi|332715799|ref|YP_004443265.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062484|gb|ADY66174.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 296

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  VA   +F  A + L LS S++ + ++ LE  +G++LF R  R ++LT 
Sbjct: 1   MDKLSEIDAFVRVAERLNFAKAGQSLGLSPSAVGKSVARLEASLGVRLFNRTTRQVSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+ L      +   L      + ++   P G LR+     +G   L   + EF   YPD
Sbjct: 61  EGAMLFERYRSILTDLRDAHEAVTDNLALPRGSLRVTLP-TIGYRFLLPIVPEFRRRYPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L  +++ +D+     D AIR  + +  SSLI R+L        A+P Y +    P 
Sbjct: 120 IDLELDFNDRRVDLIEGGFDAAIRSGE-LDDSSLIARRLGPFRFILCASPDYFQRMGTPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  + F        +++  L   D P+   RI  L   +  +I    + G G+
Sbjct: 179 HPSQLPEHEALRFRFPTSGRFQEW-LLENGDNPLSSMRI-ALTCGNMEAIRAAAIDGMGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A +P+++  D   +  L  ++ + +         +P A     +L+AF +F   
Sbjct: 237 AYMPEFLATDAIRDGLLETVLNEHLAAPGQFSIVWPSARFMAPRLRAFIDFAIE 290


>gi|194366151|ref|YP_002028761.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348955|gb|ACF52078.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 301

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 136/296 (45%), Gaps = 7/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +R F  +   G    AAE L +S + +S+Q+  LE  +G+ L  R  R ++LTE
Sbjct: 1   MDSFNLMRAFRRIVERGGLARAAEDLGMSPAGLSKQLRTLEAHLGVVLLQRTTRRMSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +  +LE  +  + E     +G+LR+        + L   L  FL  +P 
Sbjct: 61  TGHAYYRECCRLLDELEALERGIAEQRGDVAGRLRVNAPQSFALSTLSPLLPRFLQQHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+++++ +D   +  D ++RLR  +  S L+ R+L ++     AAP YL+    P 
Sbjct: 121 LSLDLVMEDRLLDAVGEGFDVSLRLRAELDDSRLVARRLASLQQVLCAAPSYLQQHPAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL  H+++ +             L   D  +     + + VN+ L +    V G GI
Sbjct: 181 AVDELQAHSVLAYSLSDSPGSWP---LLGPDGQVTITLPARVTVNNSLLLRDLLVAGMGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP ++         L +++ D   P   V+  YP +     K++AF +F+  + 
Sbjct: 238 GALPSFLAAPALARGELQQVLPDHRYPPRFVHAVYPTSRHLQPKVRAFIDFLHAEL 293


>gi|307301326|ref|ZP_07581088.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306903782|gb|EFN34369.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 302

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G+FT A+  L++ +++++  I GLE  +  KL  R  R + +T 
Sbjct: 1   MDQLTAMRAFLRVVETGNFTRASASLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   + +   L+     L  +   P G+LR+ T       ++   L EF   YPD
Sbjct: 61  DGALYYERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHKKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ ID   +  DCAIR    +   SLI R++  +   A A+  +L+    P 
Sbjct: 121 IQIDLGVSDRTIDYLAESVDCAIRAG-TLTDQSLIARRITEMKFVACASRDFLERHPVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
              +L+K N    G  +PK  +   +         E      +  N   + +     G G
Sbjct: 180 HPSDLEK-NCYVVGYFLPKTGQQMPFHFRRGNEEIEVSGRYTVAANESTTYLAAARAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +   P ++V+++     +V ++ D       +Y  YP     + +L+ F +++ 
Sbjct: 239 VIQAPLFMVREDLRNGTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWVV 292


>gi|295680908|ref|YP_003609482.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440803|gb|ADG19971.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 351

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 125/299 (41%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF  V  SGS T AA    LS + +   +  LET +G  L +R  R   ++
Sbjct: 44  MDL-LKAMTVFVRVVESGSLTAAAVACDLSPTMVGNHLQALETRLGATLIHRTTRKQQIS 102

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +    E+   ++ ++    +    P G+LR+   +      L   + ++   YP
Sbjct: 103 AFGQTYYERCIEILGLVDDSERLALDHLATPRGRLRVTAPVVFSNECLMPVIADYCERYP 162

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ ++  +   D+  D  + A+R+   + +  L+ R+L    +   A+  YL     P
Sbjct: 163 EVKLDIVATDALSDLLDDGFEAAVRIGA-LGNPDLVARRLQPYRLVLCASRAYLATHGTP 221

Query: 181 LSIQELDKHNLITFGDLIPKCME--DFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            S   L  H  +T+              W L   D  +  P    L++++  ++ +  + 
Sbjct: 222 SSPDALRSHQCLTYAYPPRSEWHAAQAEWSLQGPDGRVSVPVDGRLRIDNSEALRRAVLR 281

Query: 238 GSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GIA+LP+ +V  +     LV ++     P   +   Y    + + KL++F  F+  +
Sbjct: 282 GLGIAMLPEVLVAADLRAKRLVEVLPAFAAPERPLSLLYLRERQTSPKLRSFIEFMVER 340


>gi|293608444|ref|ZP_06690747.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829017|gb|EFF87379.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 301

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 1   MS-FDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           MS FD +   +L +F  V   GSF+  A    ++ S++S+ IS LE  +G++L  R  R 
Sbjct: 1   MSYFDINRSGELAIFIRVVELGSFSAVARACDMTPSAVSKLISRLEKRLGVRLLNRSTRQ 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
             LT +G + +    ++ + L+  +  +  +   P G++RI T++    + L   +  F 
Sbjct: 61  FQLTSEGCQFYEQGIQILNNLDELEQSVTANH-MPQGRIRIHTSLSYWTHFLLPCISLFN 119

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP I+++  L ++ I++     D AIR   P++SS+L+ R L     H   +P Y++ 
Sbjct: 120 ERYPQIELEAHLSDEVINLVEQRIDVAIRTG-PLKSSNLVARSLGRTQKHYVCSPTYIEK 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYC 235
              P   ++L +H L+     +    ++  WL    D+ I       L++N   +I+Q  
Sbjct: 179 NGYPQHPEQLYEHQLL----DVSYQRQNKTWLFKKDDQEITLAPTKVLRINHGEAILQLA 234

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYP-EALKNTGKLKAFRNFI 290
           + G+GIA L  + VK   +   LV+I+ED  I  S   +  +         +++AF +F+
Sbjct: 235 LAGAGIAQLNQFQVKKALEQKQLVKILEDWNIKASEEFHAVWIGHDKYVPKRVRAFLDFL 294

Query: 291 FLKAR 295
              A+
Sbjct: 295 VEHAK 299


>gi|307729875|ref|YP_003907099.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584410|gb|ADN57808.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 306

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 137/300 (45%), Gaps = 12/300 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +   GSF  A   L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERMLNGMGVLTAIVDCGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +     + + LE       + +    G+LR+       + +L   +  F+ 
Sbjct: 61  TLTDEGRRFYEQIVPLLNGLEEAAASAAQGATAVRGRLRVNMDPFFSRLILGPRVGAFID 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ ++LI  ++  DI  +  D AIR  +P   SSLI RKL+   +   AAP YLK  
Sbjct: 121 RHPDLHVELITRDQLGDIVSEGFDVAIRFGEP-PVSSLIARKLLDTRILTVAAPSYLKKH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQY 234
             P +  EL+  +H  I F D  P     F+W     R  +       L VN   ++   
Sbjct: 180 GHPANPAELENGRHACIKFRD--PLTGYPFSWEFHRGRKKMIVTPQGRLTVNDVGTLHSA 237

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           C  G G+A +     +    +  +V +  D     + +Y  YP       K++AF +FI 
Sbjct: 238 CAAGQGVAQILALGAESLLASGKMVELFPDWADEVYPLYALYPSRHHPPAKVRAFLDFIV 297


>gi|254524616|ref|ZP_05136671.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
 gi|219722207|gb|EED40732.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
          Length = 343

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 137/300 (45%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D ++  +F  V   GSF  AA+ L L ++++SR++  LET +G +L +R  R L LT
Sbjct: 1   MSHDLNETLIFVKVVEQGSFIAAAKSLGLPKTTVSRKVQELETRLGARLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      +G   +   L +F   YP
Sbjct: 61  EAGSIYHEHCQRIARELEEAESAVSQLQSGPRGWLRFTVPYSIGITWIAPLLGQFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIRLDMHMGNEKLDLIAGEADLALRVGA-LPDSNLVARKLGSLRTQVFASPAYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVL 237
           L  +EL  H ++             F W    +       P    +  N   ++    V 
Sbjct: 180 LHPEELQFHRILAMRKPYHTGNSPRFTWQLGENGGELRDFPVTPLMTANDMSALNGALVC 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+ L  D + K   ++  + R++     P       +      + K++AF +F+  K 
Sbjct: 240 GEGLLLTGDVMAKPFVESGMVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVEKL 299


>gi|332991540|gb|AEF01595.1| LysR family transcriptional regulator [Alteromonas sp. SN2]
          Length = 299

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 141/296 (47%), Gaps = 14/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D +++F  VA + + + A  +  LS +  S  +S LE  +G++L +R  R ++LT++
Sbjct: 2   INLDYVKLFTRVAATQNISKAGAEFGLSSAVASAHLSKLEESLGVRLIHRTTRKVSLTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +V    +     ++    KPSGKLRI   +      L   L EF+ ++PD+
Sbjct: 62  GEEFLPKARDVLVSADIAVSSVRGG-AKPSGKLRITAPVSFSHIHLIPALNEFMGIFPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L +  +DI     D AIR  + ++ S+LI RKL   +    A+P YL+    P +
Sbjct: 121 SVELRLSDTIVDIVEGGFDIAIRNAE-LKDSALIARKLAIDNRIICASPEYLEKHGRPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            + L KHN I         + + NWL    + +   +       ++  ++   CV G GI
Sbjct: 180 PEALPKHNCINL-------IGNDNWLFRTSKGLLNIKTRGAFTTDNGKAVCDACVNGMGI 232

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +   +I  ++     LV+I+ED       +++  YP +     K++AF ++   +
Sbjct: 233 VMCSTWIAYEHLRAGTLVQILEDYPLEADASIWAVYPSSKLVAPKVRAFIDYFSER 288


>gi|167824806|ref|ZP_02456277.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
          Length = 300

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 135/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LR++     G+  +   +  F   +PD
Sbjct: 61  EGSAFLEDCQRIINDIQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGMPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L +HN +    L     +   W       +   R+S  ++ +    + ++C+ G G
Sbjct: 180 TLDDLARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|70731338|ref|YP_261079.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345637|gb|AAY93243.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 299

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 138/297 (46%), Gaps = 10/297 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   + VF  VA + SFT A   L +S S++ + I+ LE  +  +LF+R  R ++LT 
Sbjct: 1   MDWLGSIPVFMQVAETRSFTEAGRLLGVSSSAVGKSIARLEERLETRLFHRTTRSISLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  ++E  + +L +SS  P GKLR++        LL   L EF+  YP 
Sbjct: 61  EGAGFLERCRRIAAEVEAAEFQLCDSSSAPVGKLRVSAPQ--VHGLLMPVLAEFMQRYPQ 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L ++ +D+  +  D  +R   P + S L+ R+L    M    +P Y +    P 
Sbjct: 119 IELDIDLSDRMVDVVEEGFDLVVRTGNP-KDSRLLARQLGRFRMVLVGSPGYFQQRGVPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           + QEL  H+ +         +E + +    D P  EP + + L  +S  ++      G G
Sbjct: 178 TPQELRSHSCLRHTFHHTGKLEAWPFKVQADAP--EPVLPTRLTSSSIEAVEHAARSGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LPD++V+       L  +++  +  +   +  +P +     KL+     +  + 
Sbjct: 236 IACLPDFMVQAAVRRGELQTVLDPYLEHNGAFWVLWPSSRHAAAKLRVLIEHLSERL 292


>gi|152983030|ref|YP_001352585.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151283107|gb|ABR91517.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 305

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 142/300 (47%), Gaps = 13/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  +GSF+  A +   +QS++S+Q++ LE E+G++L  R  R L LTE
Sbjct: 1   MDKLQAMKVFVRVVEAGSFSAVAHESDTTQSAVSKQVAALERELGVRLLTRTTRSLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +       +  ++   + ELQ    + +G LRIA ++  G+  L   ++ FL  +  
Sbjct: 61  EGERYFEQLRRLIAEISEAEGELQRGEQQLTGWLRIAASVGFGRLKLMPLVQSFLAEHRG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL----KNC 177
           ++I L L +  ID+     D A+RL   +  SSLI R++ T      A   YL    K  
Sbjct: 121 VKIDLRLHDGFIDLVEQGIDVAVRLGD-LPDSSLIARRVGTASRMLMAHRSYLRSLPKGT 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQ 233
           + P++  +L +HN I + +L  +   +F         IG  RI      LQ NS   I  
Sbjct: 180 KTPITPDDLSEHNCIVYTELAMRNTWNFKAGPGAPDAIGTTRIVRVEGNLQTNSSEVIRA 239

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GI   P ++ +    +  + RI+ D  T    +    P   +++ K+KAF   +
Sbjct: 240 SILGGMGITYSPTWLFEKELASGEVQRILPDWETLPIPIQLVSPRERRHSAKVKAFAEHV 299


>gi|320158060|ref|YP_004190438.1| transcriptional regulator [Vibrio vulnificus MO6-24/O]
 gi|319933372|gb|ADV88235.1| transcriptional regulator [Vibrio vulnificus MO6-24/O]
          Length = 305

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LT+
Sbjct: 5   QINLADIRSFVLIAQLGNFTKAAEALGVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G  L        H ++   +   +      G++RI      LG+ ++   + +F+  YP
Sbjct: 65  AGKALFAQCETALHSIDQAVLAAVDDIEAVRGEIRINCVGGYLGEEVIAEVVGQFMQQYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L   +  +D+  D  D A R+ K ++ S  + RKL+ + M  YA+P YL     P
Sbjct: 125 QVRVDLDFSSHRVDLIEDEFDIAFRMGK-LEDSGFVARKLIDVEMGTYASPSYLATHGRP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +ELDKH  +T G +     +      T D  +       L+  +   +++  + G+G
Sbjct: 184 EHPKELDKHACLT-GSVTRWTFQHRQNKQTSDYQV----RGKLRCKNGRVMLKGALAGNG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P        +   L  + ED   PS      Y        +++ F  F
Sbjct: 239 IIRVPTLYCMPELEQGLLQEVFEDWHIPSVAFSALYHRDRYQPKRIRTFIEF 290


>gi|270261030|ref|ZP_06189303.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044514|gb|EFA17605.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 306

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 145/298 (48%), Gaps = 11/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               ++ F  VA   SF  AA+ L+++ S+ISR +  LE +V + L  R  R ++LTE G
Sbjct: 5   SLQLVKAFVAVAEHQSFARAAQALNMTPSAISRLVKKLEQQVDMLLINRTTRAMSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     S    +L      +++   +P G LR++T++  G+  +  +L  F++ YP ++
Sbjct: 65  QRYFTDCSAALEQLRMAYERMRDEQSQPQGTLRVSTSLSFGRLHVAPHLAAFMVQYPQLR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L++ ++ +DI  +    AIR+ + +  SSL+ RKL+       A+PHYL+    P ++
Sbjct: 125 IDLLMTDRYVDIVAERVAVAIRIGR-LPDSSLVARKLLNNRRILVASPHYLQQHGTPTTL 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H  +          E++         + +P+   ++ ++  ++ Q+C+ G GIA 
Sbjct: 184 EELRQHQCLV--STASHDGENWRLFGPAGATVFQPK-GRMRADNGDAVKQFCIDGQGIAF 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
                + ++     LV+++         VY  YP         +A  +F+ L+   W+
Sbjct: 241 HSAVTMAESIRLGELVQLLPQWTGRETGVYSVYPPGPVGPAA-RALIDFLTLR---WQ 294


>gi|222149796|ref|YP_002550753.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221736778|gb|ACM37741.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 309

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 142/292 (48%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE
Sbjct: 1   MDTLTRIRAFIDVVEAEGFSAAARKTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  +++  +++     ++E++V  SGK+RI          +  +L +F L +PD
Sbjct: 61  AGHTYYRSAADILKEIDNLADLVRENNVGISGKIRITVPRSFTDAEVGQSLIDFALQHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+++ +++ +D+  +  D AIR+ K ++ S +I RKL     +A A+P +L+      
Sbjct: 121 LSIEIVAEDRFVDLIEEGFDLAIRVTK-LEDSGMIARKLADFRSYACASPVFLEKYGPLT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L K  ++   D   +                      L+VNS  + ++  + G GI
Sbjct: 180 HPQDLSKVPVLI--DTNTRGHNSLRLRQPDGEAFTVNISGPLEVNSPQTTLRGALSGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLPD++ +   ++  L+ I ED +     +Y  YP       K++A  +F+
Sbjct: 238 ALLPDFVARRHIESGALISIFEDYMPSGSGIYAVYPHRRYLPAKVRALVDFM 289


>gi|254472558|ref|ZP_05085957.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211958022|gb|EEA93223.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 299

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 138/302 (45%), Gaps = 11/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++VF  VA   SF  A+++L LS  +++R ++ LE  +G +LF R  R + LT+
Sbjct: 1   MDKLETMQVFVEVAERESFVEASKKLGLSAPAVTRSVARLEQSLGTRLFNRTTRHVRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   ++  +  +  S  KP G+L I   +  GQ  +   + ++L LYP+
Sbjct: 61  AGRHYLCDVKGILESVDQAEAAVTGSFAKPIGELSITAPVLFGQKYIIPLITQYLDLYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +  +  ++ +++  D  D AIR+   +Q SSL   ++ +I     AAP Y      P 
Sbjct: 121 VSVNAVFYDRIVNMVEDNLDVAIRIGN-LQDSSLYATRVGSIRRVICAAPEYFAEYGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +L  H +I      P  +E  N W  + ++         L+ N   + +Q    G+G
Sbjct: 180 TPSDLADHKII-----QPTAVETSNQWKFSGEKSEVVKIKPHLRCNQNCAAIQAATGGAG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  L  Y V  +     L   +E+       V+  Y E  + + K+++F +F   + RD 
Sbjct: 235 ITRLLSYQVAKDVANGALQLALEEYEPDPLPVHIVYMEGRRASAKVRSFVDFAAKRLRDN 294

Query: 298 KF 299
            F
Sbjct: 295 PF 296


>gi|90578297|ref|ZP_01234108.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90441383|gb|EAS66563.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 296

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 134/301 (44%), Gaps = 14/301 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +D +  F  VA S  F+ AA+QL  S S +SRQ+S LE  +G+ L  R  R + LT
Sbjct: 1   MN-SFDGIIEFVAVAESHGFSSAAKQLGCSTSHVSRQVSRLEERLGVALLARSTRQVNLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   ++    + + L+     L    +  SG LR++      +  +   L  F   YP
Sbjct: 60  DAGQLYYQQCRGLVNGLQQASESLNTQQITLSGTLRVSAAGAFAEEHVAPALMAFAKSYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I++  +++ ++   D  D AIR    ++ S L+ RKLV   M A A+  YL    EP
Sbjct: 120 DLTIEMDFNSRMVNFIEDGIDFAIRYGA-LKDSGLVARKLVDRPMAAVASQDYLARYGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               +L +H+ I   +         +W+   +      R+      N+  +++  C  G 
Sbjct: 179 THPSQLKQHSCIIANND--------HWIFEKEGNTINTRVHGRWTSNNSNAVISACEEGL 230

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA +P   +    D+ +LV I++D      + +  Y        + +   +++     D
Sbjct: 231 GIAYMPKSSLAKGLDSGSLVPILQDFWGKGNSSWIVYQNQRFLPVRARLAIDYLINYFSD 290

Query: 297 W 297
           W
Sbjct: 291 W 291


>gi|309973048|gb|ADO96249.1| Putative LysR-family transcriptional regulator [Haemophilus
           influenzae R2846]
          Length = 305

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGIMYYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----AMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKTGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 236 IANLPKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|325524769|gb|EGD02744.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 307

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 131/292 (44%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA+ L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAKAADLLGVSQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G LR+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAELIESEASAQALEPHGLLRVNAPMSFGLRHLSPLLPGFLERYPRVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     A+P YL  C  P   
Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLDRCGRPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L++H  +T+ +L       F   A+     G P    ++ N+   I    + G G+AL
Sbjct: 185 GDLEQHVCLTYTNLPTPEFWRFRHTAS-GEEFGVPVRGRIRTNNADVIGPALIAGHGLAL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            P+++V D      L  +M D       V    P  +    ++     ++  
Sbjct: 244 QPEFLVWDALQRGELEEVMPDWKIADINVNLVTPPGMLRAARVTVLLEYLAE 295


>gi|53718473|ref|YP_107459.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|53725114|ref|YP_102157.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67639352|ref|ZP_00438218.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|76810670|ref|YP_332454.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121601500|ref|YP_991984.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124385192|ref|YP_001028431.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126448800|ref|YP_001079665.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|254176718|ref|ZP_04883375.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254203840|ref|ZP_04910200.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254208817|ref|ZP_04915165.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254260030|ref|ZP_04951084.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254360128|ref|ZP_04976398.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52208887|emb|CAH34826.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|52428537|gb|AAU49130.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76580123|gb|ABA49598.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121230310|gb|ABM52828.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124293212|gb|ABN02481.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126241670|gb|ABO04763.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|147745352|gb|EDK52432.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147750693|gb|EDK57762.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148029368|gb|EDK87273.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160697759|gb|EDP87729.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|238519887|gb|EEP83353.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|254218719|gb|EET08103.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 294

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 136/287 (47%), Gaps = 7/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++         +   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLP--ALSAPVLPVLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +           EP  S +  N+  + + + + G G+A +PD+ V
Sbjct: 186 TCLLYRFPTTGKLERWPLRPAPGDADVEPPRS-MICNNVETRVCFAIRGRGLACVPDFAV 244

Query: 250 KDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +D      L  +++  I    T +  +P     + KL+AF +FI  +
Sbjct: 245 RDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFIVGR 291


>gi|258625175|ref|ZP_05720091.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258582550|gb|EEW07383.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 299

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIGLGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +PL  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIVRNGKPLKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KHN + +        +                      ++  ++ +  + G GIA +P
Sbjct: 183 LVKHNCLQYAYQTTGATDWE--FKGAKGNYIVKVSGTFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV +  + +     +Y  YP   +   K++     I  +
Sbjct: 241 RCLVYHDFRNGELVDVFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRTR 291


>gi|167737394|ref|ZP_02410168.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|217420235|ref|ZP_03451741.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217397539|gb|EEC37555.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 294

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 136/287 (47%), Gaps = 7/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++         +   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLP--ALGAPVLPVLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +           EP  S +  N+  + + + + G G+A +PD+ V
Sbjct: 186 TCLLYRFPTTGKLERWPLRPAPGDADVEPPQS-MICNNVETRVCFAIRGRGLACVPDFAV 244

Query: 250 KDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +D      L  +++  I    T +  +P     + KL+AF +FI  +
Sbjct: 245 RDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFIVGR 291


>gi|126441686|ref|YP_001058473.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126221179|gb|ABN84685.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 299

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP 
Sbjct: 61  DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVELGVTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H L+ +       +  + W+   +      R + + VNS  + +  C+ G G+
Sbjct: 180 TPADLERHRLVNYASPSNGRVAPWEWVEGDEVKRVALR-ARVTVNSAEAYIACCLAGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V  +     LV ++ D       +   YP     + + + F  ++    R
Sbjct: 239 IQIPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLR 295


>gi|186472744|ref|YP_001860086.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195076|gb|ACC73040.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 304

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 141/296 (47%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ + +F  V  + SF+  +E L L ++ +SR I  LE  VG++L  R  R +++TE
Sbjct: 1   MDRFEAMEIFTRVVDANSFSKVSEMLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  ++   +  L      P+G +R+ T+  L + LL   L +F   +P+
Sbjct: 61  DGALFYERCVRILAEVADAESSLSNKRETPAGTIRVDTSGTLARALLLPVLDDFYQRFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L +++ID+  D  DC IR+   ++ SSL+ +++ +  +   A+P YL     P 
Sbjct: 121 IDVRLGLADRNIDLIQDGVDCVIRMGM-LEESSLVAKRIGSSRIVTCASPAYLDKHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++EL +H  + +          F +    D  +     S L VN     +    LG GI
Sbjct: 180 TLEELAEHQAVNYVSARTGRTFPFEY-NVGDEVVKVQMKSVLAVNDGSVYINAGALGHGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                ++V +      L  I+ +  +PS  +   YP     + +L+AF +++   A
Sbjct: 239 IQPSRFMVAELINQGALREILTEYDSPSTPLSIVYPHRRNLSSRLRAFVDWVSEIA 294


>gi|190574827|ref|YP_001972672.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190012749|emb|CAQ46378.1| putative transcriptional regulator-LysR family [Stenotrophomonas
           maltophilia K279a]
          Length = 301

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 136/296 (45%), Gaps = 7/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +R F  +   G    AAE L +S + +S+Q+  LE  +G+ L  R  R ++LTE
Sbjct: 1   MDSFNLMRAFRRIVERGGLARAAEDLGMSPAGLSKQLRTLEAHLGVVLLQRTTRRMSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +  +L+  +  + E     +G+LR+        + L   L  FL  +P 
Sbjct: 61  TGHAYYRECCRLLDELDALERGIAEQRGDVAGRLRVNAPQSFALSTLSPLLPRFLQQHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+++++ +D   +  D ++RLR  +  S L+ R+L ++     AAP YL+    P 
Sbjct: 121 LSLDLVMEDRLLDAVGEGFDVSLRLRAELDDSRLVARRLASLQQVLCAAPSYLRQHPAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H+++ +             L   D  +     + + VN+ L +    V G GI
Sbjct: 181 AVDDLQAHSVLAYSLSDSPGSWP---LLGPDGQVTITLPARVTVNNSLLLRDLLVAGMGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP ++         L +++ D   P   V+  YP +     K++AF +F+  + 
Sbjct: 238 GALPSFLAAPALARGELQQVLPDHRYPPRFVHAVYPTSRHLQPKVRAFIDFLHAEL 293


>gi|167901542|ref|ZP_02488747.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 294

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 136/287 (47%), Gaps = 7/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++         +   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLP--ALSAPVLPVLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +           EP  S +  N+  + + + + G G+A +PD+ V
Sbjct: 186 TCLLYRFPTTGKLERWPLRPAPGDADVEPPRS-MICNNVETRVCFAIRGRGLACVPDFSV 244

Query: 250 KDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +D      L  +++  I    T +  +P     + KL+AF +FI  +
Sbjct: 245 RDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFIVGR 291


>gi|78066008|ref|YP_368777.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966753|gb|ABB08133.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 307

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA+ L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAKAADLLGVSQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAELIESEASAQALEPHGLVRVNAPMSFGLRHLSPVLPAFLERYPRVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     A+P YL     P   
Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLDRRGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++++H  +T+ +L       F   A+ D  +G      ++ N+   I+   + G G+AL
Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRQPASGD-EVGVSVHGRIRTNNADVIVPALIAGHGLAL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            P+++V +   N  L  +M D       V    P  +    ++    +F+  
Sbjct: 244 QPEFLVWEAMQNGELEEVMSDWKIADINVNLVTPPGMLRAARVTVLLDFLAE 295


>gi|149909023|ref|ZP_01897682.1| Hypothetical transcriptional regulator, LysR family [Moritella sp.
           PE36]
 gi|149808034|gb|EDM67977.1| Hypothetical transcriptional regulator, LysR family [Moritella sp.
           PE36]
          Length = 300

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  V   GSF+  AE   +++S +S++IS LE ++G++L +R  R LTLTE G 
Sbjct: 4   IDDLVLFTQVIEQGSFSKVAEANKVTKSVVSKRISRLEEDLGVQLIFRTTRKLTLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    +     +   S   +G ++++     G+ LL   + EF   +P + +
Sbjct: 64  MLFYRAKGIAQTAKNAFDTVTSYSETLAGHIKMSVPTISGELLLARAVAEFCEKHPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + ++N  +D+  D  D  IR    ++ SSLI R +        A+P YL    EP   +
Sbjct: 124 DMSMNNDFVDLVADGYDLVIRTGH-LEDSSLIARHIFNSRWMICASPEYLAQQGEPQFPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  +N + +          FNWL T D      ++S     N+ +++ Q  + G G+A 
Sbjct: 183 QLAPYNCLGYTCQTSGA---FNWLFTRDDATYNVKVSGNFSSNNAVALKQAALAGKGLAY 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP  +V    DN  LV ++         +Y  YP   K   K++     I
Sbjct: 240 LPKCLVYNELDNGKLVEVLSQQTAKVIGIYAVYPYTRKPAKKVQLLIEHI 289


>gi|194365342|ref|YP_002027952.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348146|gb|ACF51269.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 343

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 137/300 (45%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D ++  +F  V   GSF  AA+ L L ++++SR++  LET +G +L +R  R L LT
Sbjct: 1   MSHDLNETLIFVKVVEQGSFIAAAKSLGLPKTTVSRKVQELETRLGARLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      +G   +   L +F   YP
Sbjct: 61  EAGSIYHEHCQRIARELEEAESAVSQLQSGPRGWLRFTVPYSIGITWIAPLLGQFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIRLDMHMGNEKLDLIAGEADLALRVGA-LPDSNLVARKLGSLRTQVFASPAYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVL 237
           L  +EL  H ++             F W    +       P    +  N   ++    V 
Sbjct: 180 LHPEELQFHRILAMRKPYHTGNSPRFTWQLGENGGELRDFPVTPLMTANDMSALNGALVC 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+ L  D + K   ++  + R++     P       +      + K++AF +F+  K 
Sbjct: 240 GEGLLLTGDVMAKPFVESGMVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVEKL 299


>gi|269961831|ref|ZP_06176188.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833409|gb|EEZ87511.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 299

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 143/295 (48%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +++L +F+ +A+ GS T AA +L ++  S+S+ +  LE ++G+ LF R  R + LTE G
Sbjct: 5   TYNQLMMFHTIAQEGSITAAARKLEIAPPSVSQALKMLEEQLGLPLFTRTTRRIELTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+  T     +L      + + S  PSGK+RI     + Q+LL+    EF   YP IQ
Sbjct: 65  QLLYERTLASMSELNLAVESVSDLSRVPSGKVRITVPRFVYQSLLKPIYIEFCQRYPSIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLS 182
           +++ + +K IDI  D  D  IR    ++   +I R+L + +    +A+P Y++    P +
Sbjct: 125 LEISVSDKAIDIIRDGFDMGIRFGDRVE-EGMIARQLTLPVKEALFASPGYVEQYGLPET 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H LI +  +    +   N L      +     + L VN    ++     G GI 
Sbjct: 184 PDDLKQHKLIQYRFISSNQVAPLN-LNNQGETLTVNMPTALIVNDTDVMIDAAHNGLGIG 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +   +V++      +V ++E+   P   +Y  + +  +   +++   +F+  KA
Sbjct: 243 RIVTPMVEEGFKKGEIVPVLEEYWQPYSGLYVYFHKNTQKAKRVRVLIDFLLEKA 297


>gi|126438703|ref|YP_001057931.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|167909782|ref|ZP_02496873.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|126218196|gb|ABN81702.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 294

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 136/287 (47%), Gaps = 7/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++         +   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLP--ALSAPVLPVLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +           EP  S +  N+  + + + + G G+A +PD+ V
Sbjct: 186 TCLLYRFPTTGKLERWPLRPAPGDADVEPPRS-MICNNVETRVCFALRGRGLACVPDFAV 244

Query: 250 KDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +D      L  +++  I    T +  +P     + KL+AF +FI  +
Sbjct: 245 RDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFIVGR 291


>gi|186471326|ref|YP_001862644.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197635|gb|ACC75598.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 305

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 145/293 (49%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF  VAR  SF+ AAE L +S + +S++++ LE ++G +LF+R  R + +T+ G
Sbjct: 6   NLDDLRVFCTVARQASFSAAAEALSVSAAYVSKRVAMLEADLGTRLFHRSTRRVAITDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++    ++   ++    ++  +   P G LR++++   G++++   L      YP + 
Sbjct: 66  ERVYAWAEKILDDVDRLVEDVSTTRRVPRGMLRVSSSFGFGRHVVAPALARLTERYPQLS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I ++ LI ++L + H    AAP YLK    P  +
Sbjct: 126 VRLDLFDRIVDVAGEGFDLDIRIGDEI-AAHLIAKRLASNHRVLCAAPAYLKRHGTPRQL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +   +           L      +       L  N     +Q+ + G GI L
Sbjct: 185 ADLGAHQCLAIKERDHPSGVWR--LTERGETVSVKVTGPLSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + V+   D+  LV+++  V  P+  V+  YP  L ++ K++   +F+  +
Sbjct: 243 RSIWDVRGLLDSGALVQVLPGVTQPA-NVWAVYPARLASSAKVRVCVDFLADE 294


>gi|49085530|gb|AAT51285.1| PA2316 [synthetic construct]
          Length = 298

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR++    L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRVSLP--LVSGLVLPTLADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPV-DSRLSMRELGEFQLKLVGSPAYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E++  L   D          +  N+  + + + +   GIA LPD+ +
Sbjct: 186 TCLHYRFPSTGRLEEWP-LRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPDFSI 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++      LV +++         +  +P   + + KL+AF +F+  + 
Sbjct: 245 REALREGRLVSVLDAFCERRAQFFLLWPSGRQVSPKLRAFIDFVAPRV 292


>gi|269961920|ref|ZP_06176276.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269968075|ref|ZP_06182112.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827321|gb|EEZ81618.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269833368|gb|EEZ87471.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 294

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 132/302 (43%), Gaps = 15/302 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +  F  VA S  F+ AA+QL  S S +SRQ++ LE  +G+ L  R  R ++LTE
Sbjct: 1   MDSFEGINEFVTVAESLGFSAAAKQLGCSTSHVSRQVTRLEERLGVALLARSTRMVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   E+   L+    +L     + SG LR++      +N +   L  F   +P+
Sbjct: 61  AGQAYYQQCKELVIGLQQANEQLTTQQTQLSGTLRVSAAGAFSENHVAPALMAFAKQHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  +   ++   D  D AIR  + +  S L+ RKLV   M A A+  YL     P 
Sbjct: 121 LTVEINFNTSMVNFIEDGFDFAIRYGR-LSDSGLVARKLVDRPMAAAASQRYLDEHGLPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGS 239
             ++L +H+ I     +        WL   D     G       + N+  +++Q C  G 
Sbjct: 180 HPEQLKRHSCIIANKDV--------WLFEKDGKPLDGVKVQGRWKSNNAHTVLQACAEGL 231

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+A LP     D   +  LV I+E       + +  Y        + +   +F+     D
Sbjct: 232 GVAYLPKSSFNDAISSGRLVPILEPYWGSGNSSWIVYQNRHFLPLRARLAIDFLLDHFAD 291

Query: 297 WK 298
           W+
Sbjct: 292 WQ 293


>gi|167033005|ref|YP_001668236.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859493|gb|ABY97900.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 298

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 139/289 (48%), Gaps = 9/289 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A + L +S S++ ++++ LE  +G++LF+R  R +TLT +G+     
Sbjct: 9   VFNRVAETRSFVAAGQSLGISASAVGKRVARLENRLGVRLFHRSTRSITLTAEGTLFLDR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T+ EL ++S  P G+LR++        L+   L EF+ LYP +++ L   
Sbjct: 69  SRRILAEIEATEQELSQASETPRGRLRVSMPQ--VTGLVMPALAEFMALYPQVELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R  +P+  S L  + L        A+P YL+    PL  +EL  H
Sbjct: 127 DRMVDIVGEGFDVVMRGGQPV-DSRLNAKFLGHFQHRLVASPDYLRERGTPLHPRELATH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +    P   +   W    + P     I   +  N   + + + V   GI  LPD+ 
Sbjct: 186 TCLHY--RFPSNGKLETWPLRQEHPEHAYDIPISMVCNHVETRVCFAVNHRGITCLPDFT 243

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           V     N +LV +++D +    + Y  +P       KL+ F +F+  + 
Sbjct: 244 VGRELGNGSLVSVLDDFMEQRGSFYLLWPSGRHMPPKLRVFIDFMLERV 292


>gi|229846784|ref|ZP_04466891.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           7P49H1]
 gi|229810273|gb|EEP45992.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           7P49H1]
          Length = 305

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGIMYYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----AMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKTGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 236 IANLPKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|90424209|ref|YP_532579.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90106223|gb|ABD88260.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 303

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 136/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R+F  V  SGSF+ AA  L++SQ ++S+Q++ LE  +G +L  R++R L +T 
Sbjct: 1   MDRLDAMRMFVRVVESGSFSQAARDLNVSQPTVSKQLAALELRLGTQLLSRNSRALAVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  T  +   ++  +  + E    PSG +R+  +   G+  +   L +F   +P+
Sbjct: 61  AGQDYYEATVRILQDIDVVEERILEGQAAPSGLVRVTLSPAFGRMFVIPRLPDFRRRFPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++ +  + +D+  +  D AIR+ + +  S+L+ R +  + M   A+  YL     P 
Sbjct: 121 VAIEMEISGRHVDLIEEGMDVAIRIGR-LSDSALVARHIGDMRMITVASAGYLAQHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL  H  +++          F       RP+        + N    +    + G GI
Sbjct: 180 TVNELRDHQRVSYIYQGDIIGWGFQ---VAGRPVTLDGGGAFRTNDAEHVRGAVLAGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A    ++  D   +  +VRI++    PSF +        +   +++ F +F+
Sbjct: 237 AHHASWLFTDVVASGEVVRILDQHAPPSFPINAVTAAGRRMPSRVRQFIDFL 288


>gi|330953242|gb|EGH53502.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 301

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +RV+  V  +GS T AA+   +S + +   +  LE  +G+ L  R  R   LT
Sbjct: 1   MDL-FLAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    EV   +  ++   +++   P+G LRI   +  G  +L   L EF   +P
Sbjct: 60  EFGTAYYERCLEVLGLVAQSEQLAEQAQGDPTGTLRITAPLTFGSEVLAPALVEFSRRFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L+L N+ +D+  +  D AIRL    +SS LI R L    +   AAP YL     P
Sbjct: 120 EVKLDLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARALQDYTLTICAAPDYLARNGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           +   EL  HN + F                +    GE  +     +  N+  ++ Q    
Sbjct: 180 IHPAELRGHNCLAFAYPAGDEWRTAGTQWRMTGAEGEVLVDVSGSMVANTSAALYQAARA 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+ +LPD +V+ +     L+ +  D   P       Y +      KL++F  +
Sbjct: 240 GLGVVMLPDALVQRDLQEGRLIALFPDYHLPRRPTTLLYVQDRYRLPKLRSFVEY 294


>gi|330820259|ref|YP_004349121.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327372254|gb|AEA63609.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 320

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 152/298 (51%), Gaps = 15/298 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRLQAMQVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +  ++       Q  + KP G LR+     LG+ ++   L EF   YPD
Sbjct: 61  EGAGYYEHCIRILTEISEADASFQVGNRKPHGALRVHMPSLLGRRVVLPALPEFHERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++Q  + ++ +D+  D  DC IR+  P++ SS++ R++  ++  + A+P YL+   EP 
Sbjct: 121 IELQFGMSDRPVDLVRDGFDCEIRVG-PLEDSSMVARRVGVMNRVSCASPAYLEKFGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           SI+EL+KH  + F   + + M    W+  +D  + E R+ S + VN   + +   + G G
Sbjct: 180 SIEELEKHRAVNFAYALGRPMP---WIFLIDGKLQEIRMNSIVTVNDSDAYVTCALEGFG 236

Query: 241 I------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +      +++P  +   + +LV I++ V      +   YP     +  ++ F ++I  
Sbjct: 237 LIQPTLFSVIPHLM---DGSLVEILQGVYPKPKPISIVYPHNRHLSMTVRVFADWIAE 291


>gi|206561887|ref|YP_002232650.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198037927|emb|CAR53872.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 307

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 146/293 (49%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE G
Sbjct: 6   NLDDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRIAMLEAQLGTRLLHRSTRRMTVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LR++++   G++++   L +F   YP + 
Sbjct: 66  ERVFARAEKILDDVDHLVEDVSTTRTVPRGTLRLSSSFGFGRHVVAPALLDFSARYPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I    LI R+L T H    A+P YL     P S+
Sbjct: 126 VRLDLFDRLVDVAGEGYDLDVRIGDEIAD-HLIARRLATNHRVLCASPDYLARRGTPRSL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+ +   +   +      W  TV       ++   L  N     +Q+ + G GI 
Sbjct: 185 ADLASHDCLAIKE---RDHPFGVWRLTVRGETATVKVGGALSTNHGEVAVQWALAGRGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L   +      +   L R++ D + P+  ++  YPE +  + K++   +F+  
Sbjct: 242 LRSIWEAGPLIERGALCRVLPDALQPA-NIWAVYPERVAASAKVRVCVDFLVE 293


>gi|27382947|ref|NP_774476.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27356120|dbj|BAC53101.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 294

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 12/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + VF  VA    F  AA +LHLS S+++R I+ LE  +G +L  R  R +TLT+
Sbjct: 1   MDRLEAMHVFVTVADLRGFAPAARKLHLSPSAVTRLIAALEEHLGARLLQRTTRQVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +   +E      +E   +PSG+L ++  +  G+  +   +  +L  YP+
Sbjct: 61  VGTRYLERARRILADVEEADGSAREERNRPSGRLVVSAPVGFGRLHVGPVMTAYLKRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +L L +  +++  D  D A+R+   +  SSL+ R++  +     AAP YLK   EP 
Sbjct: 121 VAGELRLSDHLVNLVEDAVDVAVRIGH-LADSSLVARQVGEMRRIVVAAPGYLKRHGEPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L  H  I FG                 R I       L  NS  + +QY   G G+
Sbjct: 180 TPEALASHQTIQFGPSASWH------FMQDGRDIEVTTNPRLTSNSADAALQYAEAGGGV 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +  Y   +      L  ++     P+  ++  YP +   + K++AF + +   A +W+
Sbjct: 234 TRVLAYQAAEGLKRGRLKVVLAKYEQPALPIHVVYPTSRLLSAKVRAFVDLVVETA-EWR 292

Query: 299 F 299
           F
Sbjct: 293 F 293


>gi|221201991|ref|ZP_03575027.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia
           multivorans CGD2M]
 gi|221204879|ref|ZP_03577896.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia
           multivorans CGD2]
 gi|221175736|gb|EEE08166.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia
           multivorans CGD2]
 gi|221178074|gb|EEE10485.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia
           multivorans CGD2M]
          Length = 317

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 4/291 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D ++ F       S T +A +L LS+S +S++IS LE  +G++L  R  R +  TE 
Sbjct: 1   MNMDDIQAFLFAVERQSITDSARRLGLSKSVVSKRISDLERTLGVQLLMRSTRNVIPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++V S+   +L      + E +    G+LR+   + L +  L   +  F   +P +
Sbjct: 61  GRAFYQVASQAMRQLVDVSEAIAERAHGVCGELRVTAPVSLTRRWLGSAIAAFAASHPPL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  D++ +++ ++  D AIR  + +  S+LI R++ +       +P Y+    EP S
Sbjct: 121 RVTLETDDRIVNLDVERFDVAIRSAR-LPDSALIARRIGSCERVIVCSPEYIAKHGEPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +L KH  + +    P     F       +P      S    N+  ++    + G GIA
Sbjct: 180 IDQLLKHRCLNYSTAAPSATWSFAAPDGHGKPRAINPTSAFLSNNGETLCDAAIHGVGIA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP YIV D   +  L R++ D       VY  Y  +   + KLK F   +
Sbjct: 240 LLPRYIVDDALRDGRLARVLADASPQDEIVYAVYARSPFVSNKLKLFIEHV 290


>gi|325277495|ref|ZP_08143098.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097382|gb|EGB95625.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 277

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 131/277 (47%), Gaps = 8/277 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  +GSFT AA++L +S+ S+SR++  LE  +G++L  R  R L  T  G 
Sbjct: 4   YEDMRIFAQVMEAGSFTAAADRLGMSKQSVSRRLMQLEARLGVRLLNRSTRRLDATPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++    +  +++  + ++   +    G LR++  +      L   L EFL L+  + +
Sbjct: 64  QYYQSAMRLLGEVQQVEHDISGQAQALRGTLRLSAPLSFAMAHLGCLLTEFLQLHAQVDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+   ++ SSLI R++  +     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLIGEGYDLALRIGA-LEDSSLIARRIADVQRVYCASPAYLAARGVPARPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G       +         +         ++ N+   +    + G G+  L
Sbjct: 183 DLAGHDCLPYGHSRQVQWQ----FRQAGKAQAIQVAGRMRANNGEILRDAAIAGMGVTYL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALK 278
           P +IV     +  LV +++D   P+  +   YP   +
Sbjct: 239 PTFIVGQALADGRLVTVLDDWRPPALQLSAVYPRHRQ 275


>gi|254787878|ref|YP_003075307.1| HTH-type transcriptional regulator YhjC [Teredinibacter turnerae
           T7901]
 gi|237684647|gb|ACR11911.1| putative HTH-type transcriptional regulator YhjC [Teredinibacter
           turnerae T7901]
          Length = 302

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 141/298 (47%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R+F   A   SFT AAE L ++++ +S  +  LE ++G +LF+R  R + L+ 
Sbjct: 1   MDKLEAMRIFKRTAELLSFTAAAEDLGMAKAKVSAAVQQLEDDLGSRLFHRTTRRVQLSP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++  R  S +   L+  + +L+  +   SG +R+   + + +NL+   L EFL  YP 
Sbjct: 61  DGAEFLRGCSAIMDDLDALEGQLRGDTD-VSGNIRVDMNVSVAKNLIIPRLPEFLACYPK 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L   +  +D   +  D  +R+ + +Q S+L+ R L  +     A+  YL+   EP 
Sbjct: 120 VTVELSSVDYFVDPVKEGFDLVLRVGE-LQDSTLVARYLGDMQFMNCASRDYLEKYGEPQ 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           S +++  H ++ +            W     R   E R+   ++VN+  +    C+ G G
Sbjct: 179 SPEDMHHHRVVDYCANSVAGTRSAAWEYWDGRQFQEMRVPYSIRVNNVEAYRAACLAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA +P   +  +     LV I+      +  V+  YP       K++ F +++  + +
Sbjct: 239 IAQMPRVSLHRDAANEQLVEILHAYSAGALPVHLLYPNRRNMPRKVRVFMDWLSEQIQ 296


>gi|296446336|ref|ZP_06888281.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
 gi|296256109|gb|EFH03191.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
          Length = 300

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 134/297 (45%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +RVF  VA +GSFT AAE+L LS++  S+ +  LE  +G++L  R  R + +T
Sbjct: 1   MDL-LEAMRVFVAVADAGSFTAAAERLDLSRAMASKHVMDLEARLGVRLLDRTTRSVGVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+       E+   + T + E    + +P G+LR++     G   +   +  F   + 
Sbjct: 60  EAGAAYATRCREILDAIATAEQEATSRAAEPVGRLRVSAPSFFGARFVAPLVAAFAERHL 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L LD+K +D+  +  D AIR+ + ++ SSL+  ++ +  +    AP YL     P
Sbjct: 120 RVGVELALDDKFVDLVEEGFDLAIRIGR-LEDSSLVASRIASTRLMICGAPSYLDRRGRP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + +          F+     D P      S    NS  ++    V G G
Sbjct: 179 RGPADLSGHECLRYSHATVGAAWPFD---GPDGPELVRLSSRFASNSAEALCAMAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +   PD+ V +      L +++ D +     ++  +P       K++AF  F+  + 
Sbjct: 236 LVCAPDFYVAEPLRAGALEQVLADRMIEPLGIFIVHPSRRHVPSKVRAFIEFLTREL 292


>gi|293606574|ref|ZP_06688931.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292815050|gb|EFF74174.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 302

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GS T AA +  +S +  ++ I  LET +G++L  R  R  +LTE G   +
Sbjct: 7   MEVFVAVVEQGSLTAAATRHEMSTAMAAKHIKALETRLGLRLMNRTTRRQSLTEAGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +   +   + P G LR+ +++  G   L   + ++L +YPD+ ++L+
Sbjct: 67  ARCKTILGDIRDAEQGAEALRLTPRGHLRVTSSVTFGSFELAPAIADYLSVYPDVSVELV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   DI     D A+R+ +P   S L+ R +    M   AAP YL+    P +  +L 
Sbjct: 127 LSDVVEDIVAARYDVAVRIGEP-ADSGLVARTIGRYQMVICAAPAYLERYGTPATPDDLM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + F     +       L   D             N+  ++ Q  + G G+ L P+ 
Sbjct: 186 QHQCLDFSYWSRRTGWQ---LTGDDGSQAGYPTGRFVSNNGQALRQAALAGFGVVLQPEL 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ ++     LV I++     +  V   Y +  +   KL  F +F+  +
Sbjct: 243 LLGEDMRAGRLVPILQSFWPVARPVTLLYQKDRQALPKLTTFVDFLVER 291


>gi|167837076|ref|ZP_02463959.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 300

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 135/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  V   GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVVAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + H ++  +  +    VK SG LR++     G+  +   +  F   +PD
Sbjct: 61  EGSAFLEDCHRIIHDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPAFTGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLARAGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L +H+ +    L     +   W    D  +   R+S  ++ +    + ++C+ G G
Sbjct: 180 TLADLARHHCLA---LAANANQQRGWTFVDDGEVASIRVSGTMECSDGAVLHEWCLEGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGADIAAGRLVSVLDAFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|83748638|ref|ZP_00945656.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207727553|ref|YP_002255947.1| hypothetical protein RSMK03874 [Ralstonia solanacearum MolK2]
 gi|207741944|ref|YP_002258336.1| transcription regulator protein [Ralstonia solanacearum IPO1609]
 gi|83724682|gb|EAP71842.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206590790|emb|CAQ56402.1| hypothetical protein RSMK03874 [Ralstonia solanacearum MolK2]
 gi|206593330|emb|CAQ60257.1| transcription regulator protein [Ralstonia solanacearum IPO1609]
          Length = 312

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+
Sbjct: 1   MDRLQSMRVFAKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   +V   ++  +      S    G LRI   +  G ++L   L  F  LYP+
Sbjct: 61  VGETYLQRCQQVLLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P 
Sbjct: 121 VTFDVALSDRPIDIVEDGRDIGIMVSELGLGSHLVARRMISAEMIMAATPAYLRQHTTPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +++  H +I      P+   ++   A   + I  P    L  ++   + +  +   GI
Sbjct: 181 RAEDIADHRVIAMWH--PQLRHEWEMSAPDGQSIAVPVQPSLVTSNAELMHRAVLADMGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L  Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A
Sbjct: 239 AILSSYMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQA 294


>gi|327479940|gb|AEA83250.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 307

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 142/297 (47%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAAETLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  +S  P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAAYYERVVRLLADMDDAETSLSGASTLPRGRLRVDVPSPLARMILVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +D+  +  DC +R    I   SL+ R++  + +  YAAP YL+    P 
Sbjct: 121 IQLDMGVSDRRVDLIDENVDCVVR-GGDITDQSLVARRVGDLRLGVYAAPGYLERAGTPR 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLG 238
             +EL+   H ++ F  L  +  + F +    +    E      L V+   + +   + G
Sbjct: 180 HPRELENTHHRIVGF--LWARAGKVFPYAMHGNGERVEVLGQYVLAVDDGNAYLAAGLAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  LPDY+ K++     LV + E        +Y  +P     + KL+ F +++  
Sbjct: 238 LGILWLPDYMAKEHLARGELVLLFEHWQLEPMPLYVAFPPNRHVSAKLRVFIDWVAE 294


>gi|260550593|ref|ZP_05824802.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406304|gb|EEW99787.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 306

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 136/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L++F  +   GSF+ AA+QL++ +++ S  I  LE+ +  +L  R  R +  + 
Sbjct: 1   MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   +++  +L+  +  L+    +P G LR+  +      ++  N+ +F  LYPD
Sbjct: 61  DGQAFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHELYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  DC +R  + +  S+LI R LV +     A+P YL     P 
Sbjct: 121 IELVISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVICASPDYLNKNGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + F          F  L    +       S + VN   + +   + G+G+
Sbjct: 180 QPEDLLSHYCVNFFSTTAGRNYPFE-LMVNGKKQDYFLKSWIAVNDAENYVLSALRGAGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V +   +  LV ++     P  +V   YP+  + + +++ F  ++  
Sbjct: 239 IQVPRYHVANELKDGQLVEVLSAWEIPKMSVSALYPQHRQLSPRVRVFVAWLSE 292


>gi|170696696|ref|ZP_02887812.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138399|gb|EDT06611.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 306

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/300 (29%), Positives = 136/300 (45%), Gaps = 12/300 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +   GSF  A   L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERVLNGMGVLTAIVDCGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +     +   LE         +    G+LR+       + +L   L  F+ 
Sbjct: 61  TLTDEGRRFYEQIVPLLSGLEDAAASAARGATAVRGRLRVNMDPFFSRLVLGPRLGGFVD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+Q++LI  ++  D+  D  D AIR  +P   SSLI RKL+   +   AAP YLK  
Sbjct: 121 KHPDLQLELITRDQLGDMVGDGFDVAIRFGEP-PVSSLIARKLLDTRILTVAAPSYLKKH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQY 234
             P +  EL+  +H  I F D  P     F+W     R  I       L VN   ++   
Sbjct: 180 GHPANPAELESGQHACIKFRD--PLTGYPFSWEFHRGRKKIVVTPQGRLTVNDVGTLHSV 237

Query: 235 CVLGSGIALL---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           C  G GIA +       +  +  LV +  +     + +Y  YP       K++AF +FI 
Sbjct: 238 CAAGQGIAQILALGAEALLASGKLVELFPEWGDELYPLYALYPSRHHPPAKVRAFIDFII 297


>gi|296158939|ref|ZP_06841767.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295890814|gb|EFG70604.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 334

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R LTLT 
Sbjct: 35  MDRFKQIETFVTVAAKGSLSAAASAEGVAPAIIGRRIDALEERLGVKLLVRTTRKLTLTF 94

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + H+++  +  +    VK SG LR++     G+  +   +  F + +PD
Sbjct: 95  EGSAFLEDCQRIIHEMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPD 154

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL     P 
Sbjct: 155 VSITLDLSDRLVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPTYLSRRAAPH 213

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           S+ +L  HN +  G       +   W+   D  +   ++S  ++ +    +  +C+ G G
Sbjct: 214 SLADLAHHNCLALG---ASANQQRGWMFQQDDKVVSIKVSGTMECSDGAVLHDWCLEGYG 270

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV ++++   P   ++  +P+      +++ F +F+
Sbjct: 271 LAWRSWWEVGTDIAAGRLVSVLDEFAAPPIGIHAVFPQRRHLPLRVRLFLDFL 323


>gi|221200148|ref|ZP_03573191.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
 gi|221206699|ref|ZP_03579711.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221173354|gb|EEE05789.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221180387|gb|EEE12791.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
          Length = 322

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 138/295 (46%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++    E  + +      KP+G LR+     LG+ L+  +L  F   YPD
Sbjct: 61  EGAAYYEHCVKI--LSEIAEADASFQKGKPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     AAP YL    EP 
Sbjct: 119 ITLDLGLSDRPVDPIEEGIDCMIRVG-PLEDSSMVARRIGMLRRVTCAAPDYLARHGEPR 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I +L  H  + F     +      W+  +D    E R+ + + VN   + +   + G G
Sbjct: 178 EIADLAGHYAVNF--RATQGGRAVPWVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     + +LV ++ D       +   YP     + K++ F ++I  
Sbjct: 236 MIQPTLFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWIAE 290


>gi|331655147|ref|ZP_08356146.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
 gi|331047162|gb|EGI19240.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
          Length = 323

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|315499519|ref|YP_004088322.1| transcriptional regulator, lysr family [Asticcacaulis excentricus
           CB 48]
 gi|315417531|gb|ADU14171.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 299

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 148/294 (50%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D L  F++V  +GSF  AA++L +++S +SR+++ LE ++  +L  R ARG   T+ G
Sbjct: 6   DLDDLHAFFLVVETGSFARAADRLGVAKSIVSRRVAHLEDQLKARLLTRTARGTQTTDVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +    E   +LE  Q  + ++ ++ +G +R++  +  G + L   L EF +  P I+
Sbjct: 66  ALYYAKAREAMAQLEAAQEAVNDAMLEVAGPIRLSAPLSFGVSHLAPVLTEFAVRNPRIE 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +  D++ +D+     D  IR+ + +  S+LI R++  I+    A+P YL     P + 
Sbjct: 126 LDVSFDDRRVDVLGGGFDVVIRIGE-LTDSTLIARRIGHINGMIVASPDYLSQKGMPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L + + + + ++ P  +    W   V+      RI   L+ ++   ++   V G G+A
Sbjct: 185 DDLGQLDCLLYTNVAPGDV----WRFVVNGEERMVRIPVRLRSDNGDMLLSAAVAGLGVA 240

Query: 243 LLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP +I      +  +V I+ +  T +  +    P     T +++A  +F+ L+
Sbjct: 241 RLPAFISSEAIASGQVVPILPEYNT-TVPLCAVMPPGRSRTARVRALVDFLALR 293


>gi|238024793|ref|YP_002909025.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879458|gb|ACR31790.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 314

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 141/292 (48%), Gaps = 13/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT +G+  +
Sbjct: 1   MQVFTRVVDANSFTRAAETLSMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTPEGAGYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++       Q  + KP G LR+     LG+ +L   L  F   YPDI++   
Sbjct: 61  EHCIRIMTEISEADASFQAGNRKPHGTLRVHLPSLLGRRVLLPALALFHQRYPDIELHFG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  D  DC IR+  P+  SS++ R++  I   + A+P YL+    P SI+ L+
Sbjct: 121 LSDRPVDLVRDGFDCEIRVG-PLADSSMVARRVGVIKRISCASPDYLERYGRPASIEALE 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI----- 241
           +H  + F            W   +D  + E R+ S + VN   + +   + G G+     
Sbjct: 180 QHRAVNFA--YTSGGRPMPWTFLIDGKLHEVRMNSVVTVNDSDAYVTCALEGFGMIQPML 237

Query: 242 -ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +++P  +   + +LV ++  V      +   YP +   +  ++ F +++  
Sbjct: 238 FSVIPHLL---DGSLVEVLPGVYPKPKPISIVYPHSRHLSMTVRVFADWVAE 286


>gi|281180559|dbj|BAI56889.1| putative transcriptional regulator [Escherichia coli SE15]
          Length = 323

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 139/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+        S L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGSMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|329123509|ref|ZP_08252073.1| LysR family transcriptional regulator [Haemophilus aegyptius ATCC
           11116]
 gi|327471091|gb|EGF16546.1| LysR family transcriptional regulator [Haemophilus aegyptius ATCC
           11116]
          Length = 305

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGMMYYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKIDLLSEGYDLALRI-DYMEDSSLVSRKIGTTTVHFAASPNYLETNGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----AMNPVNWVGSRINQTQRFKIQSKVVSNSAFALLNMAKAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 236 IANLPKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|327191086|gb|EGE58138.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 308

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 13/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 11  DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    + +FL  YP+IQ
Sbjct: 71  RAYYDRCSEPLAHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISDFLKAYPEIQ 130

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N  +D+  +  D  IR  + ++ S+++ ++L     +  AAP YL++   P   
Sbjct: 131 IDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPGYLRDRALPTKP 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +       +      W     R   + R+S  +    + ++  +   G GI 
Sbjct: 190 EDLKDHRCVLLNGRNGEA----EWHLISGRKSVDVRVSGSISSRDFDAVSAFTYRGHGIG 245

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LLP     +      L+R++ D  +P   V+  YP       +L+ F + +    + WK
Sbjct: 246 LLPSTYCDEQIERGALIRVLPDWSSPEIFVHAVYPTRRFLPLRLQVFLDAL----KAWK 300


>gi|194292760|ref|YP_002008667.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193226664|emb|CAQ72615.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 306

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 132/293 (45%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + +F  V   GS + AA  L LS +  S+++  LE E+G++L +R  R L +T +G+ L
Sbjct: 6   DIGLFLRVLDLGSISAAARSLDLSVAVASQRLQRLERELGVRLLHRTTRRLHVTPEGAVL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE     L+++    +G LR+ T+   G+  +   L EFL  +P + + +
Sbjct: 66  AEQGRALVDDLEALGASLRQAGTGITGTLRVTTSSSFGRLYVSPLLPEFLARHPGVSLSV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+     D AIR+   +  S+L+ R+L        A+P YL+    P + Q+L
Sbjct: 126 NLSDHVLDLVSAGFDLAIRIGA-LDDSALVARRLANNRRLLCASPDYLRRRGMPRTPQDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +       +  + +         I       ++ N+   +    + G GIAL   
Sbjct: 185 ARHDCLLLVGSQGR-QDVWRLGDGAGGEIAVRVRGRIEANTGELLSDAALAGFGIALHSA 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + V  +     LV+++ D       +Y   P+      +++AF +F+  +  D
Sbjct: 244 WHVCADLRAGRLVQVLPDYPLADTGIYAVMPQRRLVPPRVRAFVDFLAERFGD 296


>gi|184157691|ref|YP_001846030.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332876376|ref|ZP_08444145.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209285|gb|ACC56683.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322507998|gb|ADX03452.1| Transcriptional regulator LysR family [Acinetobacter baumannii
           1656-2]
 gi|323517586|gb|ADX91967.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735386|gb|EGJ66444.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 301

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 149/293 (50%), Gaps = 5/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEEQLGVALFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGTLFYEHSRRTLSEIQNAAALLDQRKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++++D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRNVDLIEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNKRGPV 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++LD+H  I   D     M+ +      D P+     + L +N   +I    +  +G
Sbjct: 181 EHIEDLDQHATI--ADPHFGQMQKWRLQKENDEPLFIKPKAKLLLNDLQAIKNAALADAG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LPD++++    +  LV+++E + + +F ++  +P       K +   +++
Sbjct: 239 IAWLPDWLIQNELQDGKLVQVLETMSSTAFPIHLVWPTLPFMPLKTRLAIDYL 291


>gi|322834321|ref|YP_004214348.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169522|gb|ADW75221.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 298

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/272 (26%), Positives = 132/272 (48%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           E++ +S S++ + ++ LE ++ ++LF R  R ++LT++G         +  +LE  + EL
Sbjct: 24  ERMGISASAVGKSVARLEEKLSVRLFNRSTRRISLTDEGQLFFERCQHIVSQLEEAEQEL 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
              S  P GKLRI     +G  +L  +L EF   YPD+++ L   ++ +D+  +  D AI
Sbjct: 84  VRISAVPRGKLRITAP-AIGYRILLPHLPEFRQRYPDVELDLDFSDRMVDVIDEGFDIAI 142

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R  + + SS ++ R+L         APHY      PL+  +L +H  + +    P   + 
Sbjct: 143 RSGE-LNSSQMMSRRLGPFRFAIVGAPHYFARHPAPLTPDDLYQHACLRY--RFPGNGQW 199

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMED 261
             W  T   P   P    L  N+  SI+Q  + G G+A +P++IV+   ++  L+ ++  
Sbjct: 200 QEWEMTSVTPPELPL--ALSSNNLESILQATIQGLGLAYVPEFIVRPHLESGELISVLPA 257

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +         +P +     K++ F +F+  K
Sbjct: 258 YLKEGGKFSVVWPSSRHMLPKVRVFIDFLTEK 289


>gi|289672745|ref|ZP_06493635.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
          Length = 304

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 128/288 (44%), Gaps = 5/288 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   AR+GSFT AA++L +++S++ + I+ LE  +G KLF+R  R L LT  G      
Sbjct: 13  IFVTAARAGSFTSAADRLGITKSAVGKSIAKLEERLGCKLFHRSTRSLGLTVDGEAYFAS 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S    ++   +  L  +   P G+LRI      G++++   L + L   P +++ +  +
Sbjct: 73  CSLAVDEVLAAEAFLTSNQKTPGGRLRIDLPAAYGRSVVLPVLLDILEANPGLKLTVTFN 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID+  +  D +IR      +S L+ R+L        AAP Y++    P S ++L +H
Sbjct: 133 DSVIDLIEEGVDLSIRFGVLKDTSGLVARRLAVQKQIICAAPRYIQKHGYPESPEDLQQH 192

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I   +        +  L               +V    +I+     G GI  +P  ++
Sbjct: 193 RCIV--NYRRGQRVSWTVLDESGELARITPPGTHEVGDGDAIIAMAAAGQGICQMPGSLI 250

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +D   +  LV ++E        ++  +P+      K++   + +  +A
Sbjct: 251 RDHLKDGRLVPVLEKYHPDDVAIHAVWPQTRHLQPKVRRVVDELVARA 298


>gi|241765568|ref|ZP_04763527.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241364628|gb|EER59671.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 318

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R++  V  +G+FT AA+ L L ++++++ +  LE  + +KL  R  R +T+T 
Sbjct: 1   MDQIQAMRIYVRVVEAGTFTRAADSLSLPKATVTKHVQALEERLRVKLLNRTTRRVTVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +  T  +   L+  +  +  +   P G+LR+     + + L+  NL +F   YPD
Sbjct: 61  DGAAYYERTVRLLTDLDDIEASMTNARSNPRGRLRVDVGTGVARLLIIPNLAQFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L + ++ +D+  D  DC IR    +   SL+ R++  +     A+P YL+    P 
Sbjct: 121 IQVDLGVSDRVVDLIGDNVDCVIR-GGELSDQSLVARRIGNLEFITVASPGYLERHGAPQ 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++  +HN + +            +    +  I       + VN   + +   + G G
Sbjct: 180 HPIDIERRHNSVIYFSPQSGRHYPLEFRKG-EESIDITGPYLVSVNESNAYLSAALAGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +A +  +      D+ +LV+++ +   P   VY  YP     + K++AF ++
Sbjct: 239 VAQITTFQATPYLDDGSLVQLLPEWSQPLLPVYVVYPPNRHLSAKVRAFVDW 290


>gi|91225774|ref|ZP_01260803.1| probable transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91189663|gb|EAS75938.1| probable transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 294

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 132/302 (43%), Gaps = 15/302 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +  F  VA S  F+ AA+QL  S S +SRQ++ LE  +G+ L  R  R ++LTE
Sbjct: 1   MDSFEGINEFVTVAESLGFSAAAKQLGCSTSHVSRQVTRLEERLGVALLARSTRMVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   E+   L+    +L     + SG LR++      +N +   L  F   +P+
Sbjct: 61  AGQAYYQQCKELVIWLQQANEQLTTQQTQLSGTLRVSAAGAFSENHVAPALMAFAKQHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  +   ++   D  D AIR  + +  S L+ RKLV   M A A+  YL     P 
Sbjct: 121 LTVEINFNTSMVNFIEDGFDFAIRYGR-LSDSGLVARKLVDRPMAATASQRYLDEHGLPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGS 239
             ++L +H+ I     +        WL   D     G       + N+  +++Q C  G 
Sbjct: 180 HPEQLKRHSCIIANKDV--------WLFEKDGKPLDGVKVQGRWKSNNAHTVLQACAEGL 231

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+A LP     D   +  LV I+E       + +  Y        + +   +F+     D
Sbjct: 232 GVAYLPKSSFNDAISSGRLVPILEPYWGSGNSSWIVYQNRHFLPLRARLAIDFLLDHFAD 291

Query: 297 WK 298
           W+
Sbjct: 292 WQ 293


>gi|91783841|ref|YP_559047.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687795|gb|ABE30995.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 355

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE GS
Sbjct: 4   LQSMRVFVKVADLGSFVGAAGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   LE  +  +   + +P G LRI   +  G + L   ++ +   YPD+  
Sbjct: 64  TYLERVRHILDDLEGVEQMVVARNHEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D  I + + ++ +S++ R+L T  M   A P YL     P   +
Sbjct: 124 DVTLADRHVDLVEEGFDVGILVARHMRGASIVTRRLTTGFMTVCATPAYLAQHGTPTRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H  +       +   +    A  D  +     + +  N+   + Q+ +LG G+A+L
Sbjct: 184 HLLAHPCL---SRPAEQGGEERVFAGPDGEVRVRPTNAIVANNAEMLRQFALLGMGVAIL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P Y++  +     LV ++ +   P   +   YP  L    K++ F + +  
Sbjct: 241 PSYLIGRDLASGRLVPLLSNYRLPQIEITIAYPSRLHLPAKVRTFIDHLVE 291


>gi|325923211|ref|ZP_08184891.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325546308|gb|EGD17482.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 306

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 144/289 (49%), Gaps = 9/289 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ + +  LE ++G++LF+R  R +TLT +G+     
Sbjct: 9   VFVQVAETRSFVAAGRLLGVSASAVGKHVVRLEEKLGVRLFHRSTRSVTLTAEGTLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E  ++EL +++  P G+LR++    L   L+   L +F+  YP+I++ L   
Sbjct: 69  SRRILAEIEAAELELSQATAAPRGRLRVSLP--LVSALVLPVLGDFMRHYPEIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R+L    M    AP+YL     P    +L +H
Sbjct: 127 DRMVDVIEEGFDAVVRTGEP-SDSRLSARRLGGFQMMLVGAPYYLAQRGTPRVPVDLLQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +    P   +   W     R  GE  +   +  N+  + + + V G GIA LPD+ 
Sbjct: 186 ACLHY--RYPNSGKLEAWPLHTRRNSGELVLPTSMICNNIETRVCFAVQGLGIACLPDFA 243

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++D   +  L+ ++ + +  S   +  +P +   + K++AF +F+  K 
Sbjct: 244 IRDLLADGRLLPVLAEHVRRSGAFHVLWPASKHPSPKVRAFVDFLCAKV 292


>gi|288961457|ref|YP_003451796.1| hypothetical protein AZL_b05890 [Azospirillum sp. B510]
 gi|288913765|dbj|BAI75252.1| hypothetical protein AZL_b05890 [Azospirillum sp. B510]
          Length = 327

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  + SF+ AAE L L ++S++  +  LE  +G++L  R  R L+LT 
Sbjct: 1   MDKLHAMRVFIRVVEANSFSKAAETLGLPRASVTTTVQNLEAALGVRLLQRTTRKLSLTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+      S +  +++  +     +   P G+LR+     +G+ ++  ++ EF   YPD
Sbjct: 61  DGAAYLEGASRILSEIDEIESTFTSARKTPRGRLRVDMPGSIGRLVIIPSIHEFHAKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D+  +  DC +R+ + +  SSL+ R++  I     A+P YL    EP 
Sbjct: 121 IDLMLGLGDRAVDLIQEGVDCVVRVGE-LADSSLLARRIGAIQQITCASPAYLAEHGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +I++L++H  I       +   +       D  + E  +   + VN   + +   + G G
Sbjct: 180 TIEDLERH--IAVNYFHNRTGRNLELCFQRDGVLEEVAMKGVIAVNDADAYVTCGLEGQG 237

Query: 241 IALLP-DYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I L P  ++V     +  L  I+ D   P   +   YP+    + K++ F +++  
Sbjct: 238 I-LQPGRFMVLPHLRSGALREILADWRPPRMPISAVYPQNRHLSPKVRVFVDWLAE 292


>gi|328469288|gb|EGF40234.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 299

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 130/292 (44%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  +L+ S +S++++ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVIELGSFSKVAEANNLTNSVVSKRMARLEEEIGAQLLYRTTRKLTLTEAGKV 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+  D  D  IR    ++ SSLI R ++       A+P Y+    +P+   +
Sbjct: 124 MSLDNRFVDLVADGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPIEPID 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   W    D      R+S     ++  ++ +  + G GIA +
Sbjct: 183 LTSHNCLQYAYQTTGASE---WEFKSDEGNYIVRVSGSFSTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V  +     LV I  +++     +Y  YP   +   K+K     I  +
Sbjct: 240 PRCLVYHDIRNGQLVDIFPELVGKKLGIYAVYPFTRQPPNKVKLLIEHIRER 291


>gi|86145038|ref|ZP_01063370.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222]
 gi|85837937|gb|EAQ56049.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222]
          Length = 301

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 139/296 (46%), Gaps = 9/296 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++AR G+FT AAE+L +S+S +SRQ+S LE ++G+ LF R  R L LT 
Sbjct: 4   QINLSDIRSFVLIARLGNFTKAAEELDVSRSHVSRQVSSLEKQMGVTLFIRTTRTLRLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G  L+    +    ++   I   +   +  G +++      LG+ ++   + EF+ LYP
Sbjct: 64  AGQDLYARCEQALDNIDQALIAAVDDVEEVRGDIKVNCVGGYLGEVIIADLVNEFMQLYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI I L   +  +D+  D  D A R+   ++ +  I RKL+ I M   A+P Y     +P
Sbjct: 124 DISISLDFSSNRVDLIEDAFDIAFRMGS-LEDAGFIARKLLDIEMGTLASPDYFARKGKP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H+ +T           F  L    + +       LQ  +   ++Q    G+G
Sbjct: 183 SHPKDLIHHDCLT----GSVRKWSFQALDDTKKTVDVHVTGRLQCKNGRVLVQGAKSGNG 238

Query: 241 IALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P  Y +++  +  L+++ E+ + P       Y        +++ F +F+  +
Sbjct: 239 IIRVPTIYCLQELNDGQLLQVFEEWVVPKVDFSAIYHRDRYQPSRIRTFIDFVKGR 294


>gi|134279453|ref|ZP_01766165.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167844550|ref|ZP_02470058.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167917806|ref|ZP_02504897.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|134248653|gb|EBA48735.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 294

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 136/287 (47%), Gaps = 7/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++         +   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLP--ALGAPVLPVLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +           EP  S +  N+  + + + + G G+A +PD+ V
Sbjct: 186 TCLLYRFPTTGKLERWPLRPAPGDADVEPPRS-MICNNVETRVCFALRGRGLACVPDFAV 244

Query: 250 KDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +D      L  +++  I    T +  +P     + KL+AF +FI  +
Sbjct: 245 RDELASARLRTVLDAYIERPQTFHVLWPSGRHASPKLRAFVDFIVGR 291


>gi|300692925|ref|YP_003753920.1| transcriptional regulator, lysR family [Ralstonia solanacearum
           PSI07]
 gi|299079985|emb|CBJ52661.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 312

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+
Sbjct: 1   MDRLQSMRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++   ++  +      S    G LRI   +  G ++L   L  F  LYP+
Sbjct: 61  VGETYLQRCQQILLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P 
Sbjct: 121 VTFDVALSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +++  H +I      P+   ++   +   + I  P    L  ++   + +  +   GI
Sbjct: 181 RAEDIVDHRVIAMWH--PQLRHEWEMTSPDGQSIAVPVQPSLVTSNAELMHRAVLADMGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L  Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A
Sbjct: 239 AILSSYMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQA 294


>gi|222106519|ref|YP_002547310.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221737698|gb|ACM38594.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 303

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 135/301 (44%), Gaps = 10/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G+FT AAE+L + +++++  I GLE  +  KL  R  R + +T 
Sbjct: 1   MDQLSAMRAFIRVVETGNFTRAAERLDMPKATVTNLIQGLEAHLQTKLLNRTTRRVMVTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    ++  +L      L  +   P G+LR+  +      ++  +L +F   +PD
Sbjct: 61  DGALYYERAVQIVSELAELDESLSNAQSTPRGRLRVEMSGAFSDWIVVPSLCDFHQKFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L + ++ +D   +  DCA+R   P    SLI R++  + M    AP Y++    P 
Sbjct: 121 MHIDLGVSDRMVDYLAENVDCALRAGTP-SDQSLIARRVCDVEMITCVAPRYIEKFGIPA 179

Query: 182 SIQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +EL+ H+  + +          F +    +      R   + VN   + M     G G
Sbjct: 180 HPRELENHHYCVNYFSSNNSRKMPFTFKKDKEELEISAR-YIVSVNDSRTYMTCAQNGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKA 294
           IA +P ++      +  LV+++ +       +Y  YP     + K++ F ++   + L+A
Sbjct: 239 IAPIPRFMAASLLASGELVQVLAEWRREPLPLYIVYPPNRHLSNKVRVFVDWLVKLLLEA 298

Query: 295 R 295
           R
Sbjct: 299 R 299


>gi|218508253|ref|ZP_03506131.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 308

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 13/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 11  DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    + +FL  YP+IQ
Sbjct: 71  RAYYDRCSEPLAHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISDFLKAYPEIQ 130

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N  +D+  +  D  IR  + ++ S+++ ++L     +  AAP YL++   P   
Sbjct: 131 IDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPGYLRDRALPTKP 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +       +      W     R   + R+S  +    + ++  +   G GI 
Sbjct: 190 EDLKDHQCVLLNGRNGEA----EWHLISGRKSVDVRVSGSISSRDFDAVSAFTYRGHGIG 245

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LLP     +      L+R++ D  +P   V+  YP       +L+ F + +    + WK
Sbjct: 246 LLPSTYCDEQIERGALIRVLPDWSSPEIFVHAVYPTRRFLPLRLQVFLDAL----KAWK 300


>gi|167901689|ref|ZP_02488894.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 305

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 138/293 (47%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LRVF  +A  G FT AA  L +S S ++R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDYFQSLRVFVKIADLGGFTRAASALDISNSVVTRALAELEAHLGTRLLNRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  +L+  +  +   + +PSG LRI   +  G N L   L+ +   +P 
Sbjct: 61  AGRVYLEKARQILVELDDAKEMVAAGNREPSGTLRIVAPVVFGLNSLAPLLQSYSARFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I   L L +  +D+  +  D  I + K ++SSS++ R L T +    AAP YL+    P 
Sbjct: 121 IVTDLTLLDHQVDLVAEGFDVGIMVFKQMRSSSIVTRHLTTENWIVCAAPSYLEKHGVPS 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++++  H  ++          D  +  +      +P ++    N+   + +  +LG G+
Sbjct: 181 RVEQISHHVCLSLP--ADHWGVDCTFTRSGGAACSQP-LNRFVANNIEMLRRLAILGMGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A LPDY++K +     LV +  D   P F ++  YP       K++ F + I 
Sbjct: 238 ATLPDYLIKGDITCGRLVHLFSDRRHPKFDIHVAYPSRRYLAAKVRTFVDHIV 290


>gi|254245631|ref|ZP_04938952.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124870407|gb|EAY62123.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 325

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 137/298 (45%), Gaps = 7/298 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D    +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LT
Sbjct: 12  RMDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALT 71

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YP
Sbjct: 72  EAGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRERYP 131

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+++   P
Sbjct: 132 DVHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVESHGVP 191

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGS 239
               +L +H  +    + P    D   LA  +     P      +VN   ++      G 
Sbjct: 192 QRPADLAQHVCLGM--VAPGFHFDEWALAGPNGDEVVPITAPPFRVNVAEALAVAVREGM 249

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  LP Y       + ++VR+M +  +    +Y  YP       K++ + +F+  + 
Sbjct: 250 GIGGLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLREEL 307


>gi|171057523|ref|YP_001789872.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774968|gb|ACB33107.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 307

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 128/295 (43%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W ++  F  VA  GS + AAE+L +S ++ SR +  LE  +G +L  R  R L LTE
Sbjct: 1   MDRWSQIEFFVQVAELGSLSRAAEKLDMSNAAASRTLVALEERLGARLVERTTRRLWLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   HR    +  ++   +  + E++++P+G LR+ +++      +   L EF   YP 
Sbjct: 61  AGQAFHRRCVAMLAEMAEAEAAVLETTLQPTGLLRVTSSVSFAMLHIAPGLPEFSRRYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +Q++  N+  D      D AIR R+    S +  R+L         AP Y      P 
Sbjct: 121 LNVQIVAANRYPDFIEAGIDVAIRTREVEGDSGITVRRLAHTRRVLAGAPGYFAVHGTPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H L+ +       +  F+     D        S L  N    I    + G GI
Sbjct: 181 TPDDLKQHRLLVYNLAKDPNVLHFS---RGDERCDTSITSMLDSNEGQVICSAGLAGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + P YI+ D      LV ++ D   P  T+   Y        K++ F +F+  +
Sbjct: 238 VIQPLYIIHDEIVAGRLVPVLTDWELPPLTINLAYQSRRHQPAKIRVFNDFLVER 292


>gi|73542229|ref|YP_296749.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72119642|gb|AAZ61905.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 302

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 129/297 (43%), Gaps = 11/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD   + VF   A  G+ + AA  L LS S+ S +++ LE  +G +L +R  R L+LT
Sbjct: 1   MYFDLLDVAVFTRAASLGNLSAAARDLQLSTSTASARLARLEQTLGTRLLHRTTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +      ++    E  +  + + +  P G LR+      G+  +   +  FL  YP
Sbjct: 61  ADGERFIEHAQQLLATAEAAEQSVGKGARAPHGLLRVTAPASFGRQHVSPAIPAFLETYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ L L ++ + +     D A+R+   +  SSL+ R L        AAP YL     P
Sbjct: 121 EIRLDLRLSDQVVPLVDAGIDVALRMGA-LPDSSLVARALAPSRRVICAAPSYLAAHGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  HN +  GD      +      T            L+V++   I    V G G
Sbjct: 180 KHPDDLRTHNCLILGDQSAWRFD------TPLGETAVTVHGNLRVDNGEVIRDALVAGMG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IAL   + V     +  LV ++++  + P+ +++  YP       K +AF +F   +
Sbjct: 234 IALKSTWDVGALLRSGQLVTVLDEYPVLPAVSIWAVYPSRHLVPAKTRAFVDFFAAR 290


>gi|254507907|ref|ZP_05120036.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219549143|gb|EED26139.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 299

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 125/291 (42%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVEMGSFSKVAETNNLTNSVVSKRIARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V          +       SG ++++     G  +L   + EF   +P + + 
Sbjct: 64  LTHGAKNVKQATLEAMDAVSGFGENISGHIKMSVPTISGDLILADAVAEFCNTHPGLSVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYVARNSKPVKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN + +        E        +             ++  ++ +  + G GIA +P
Sbjct: 183 LTQHNCLQYAYQTTGASEWE--FKGKEGNYIVRVSGSFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV +  + +     +Y  YP   +   K+K     I  +
Sbjct: 241 RCLVYHDIRNGQLVDLFPEQVGKRLGIYAVYPFTRQPPNKVKLLIEHIRAR 291


>gi|330820616|ref|YP_004349478.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327372611|gb|AEA63966.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 301

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 133/295 (45%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L++F  +  +GSF+ +A+ L + ++S +  I  LE  +G +L  R  R +  T 
Sbjct: 1   MDRLDTLQLFTRIVETGSFSRSADMLGIPRASATHAIKQLEARLGTRLLERTTRQVRPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +     V  +L+  +  L++ +  P G LR+         ++   + +F   YP+
Sbjct: 61  DGSAFYERCVLVLTELDDAEASLRQVASNPRGVLRVDMHGTHATTIVIPRIDDFHRRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  DC +R  +P   SSL+ R+L  +     A+P YL     P 
Sbjct: 121 IELVVSSGDRLVDLVREGVDCVVRGGRP-HDSSLVARRLAMMPQVICASPAYLAEFGMPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              EL  H  + F         D+ +   VD  + +  I   + VN   + +     G G
Sbjct: 180 HPDELPGHRAVRFFSSNGNI--DYPFSLVVDGEVRDYDIGGWISVNDAENYVVAAERGCG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  +P + ++    +  LV ++ +  +P   +   YP   + + +++ F +++  
Sbjct: 238 LIQVPRFHLEGALRDGRLVEVLPEWRSPDLPLTALYPYRRQLSPRVRVFVDWLRE 292


>gi|302187338|ref|ZP_07264011.1| LysR protein [Pseudomonas syringae pv. syringae 642]
          Length = 311

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 142/297 (47%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLLNRTTRRVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  ++  P G+LR+     L   LL   L +F   YPD
Sbjct: 61  DGAVFYERVVRLLADMDDAETSLSSATSLPRGRLRVDVPSPLASLLLMPALPDFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI + + ++ +D+  +  DC +R    I   SL+ R++  + +  YAAP YL+    P+
Sbjct: 121 IQIDMGVSDRMVDLIGENVDCVVR-GGEIADQSLMARRVGDLQLGVYAAPDYLQRMGTPV 179

Query: 182 SIQELDK--HNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLG 238
             QEL+   H ++ +  L  +  +   +    D   +       L V+   + +   + G
Sbjct: 180 HPQELEDSAHRIVGY--LWARTGKALPYAMHRDGEKVHVQGRYTLAVDDGNAYIAAGLAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  LPDY+ + +     LV + ED    S  +Y  +P     + K++ F ++I  
Sbjct: 238 MGILWLPDYMARPHRECGALVSLFEDWQLDSMPMYVAFPPNRHISIKVRVFIDWITE 294


>gi|323494873|ref|ZP_08099965.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323310837|gb|EGA64009.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 299

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 131/292 (44%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSKVAEINNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LTSGAKNVKQAAQEAMDAVSGFGENVSGHIKMSVPSISGDLILADAVAEFCNLHPGLSVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+  Q+
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIARNGKPIEPQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   W    ++     R+S     ++  ++ +  + G GIA +
Sbjct: 183 LTLHNCLQYAYQTTGASE---WEFKSEQSNYIIRVSGSFSTDNATALRKAALGGHGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V  +     LV +  + +     +Y  YP   +   K+K     I  +
Sbjct: 240 PRCLVYHDIRNGQLVDLFPEQVGKKLGIYAVYPFTRQPPNKVKLLIEHIRAR 291


>gi|148975143|ref|ZP_01812067.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965067|gb|EDK30317.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 301

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 139/296 (46%), Gaps = 9/296 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++AR G+FT AAE+L +S+S +SRQ+S LE ++G+ LF R  R L LT 
Sbjct: 4   QINLSDIRSFVLIARLGNFTKAAEELDVSRSHVSRQVSSLEKQMGVTLFIRTTRTLRLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G  L+    +    ++   I   +   +  G +++      LG+ ++   + EF+ LYP
Sbjct: 64  AGQDLYTKCEQALDNIDQALIAAVDDVEEVRGDIKVNCVGGYLGEVIIADLVNEFMQLYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI I L   +  +D+  D  D A R+   ++ +  I RKL+ I M   A+P Y     +P
Sbjct: 124 DISISLDFSSNRVDLIEDAFDIAFRMGS-LEDAGFIARKLLDIEMGTLASPEYFVRKGKP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H+ +T           F  L    + +       LQ  +   ++Q    G+G
Sbjct: 183 NHPKDLIHHDCLT----GSVRKWIFQALDDTKKTVDVHVTGRLQCKNGRVLVQGAKSGNG 238

Query: 241 IALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P  Y +++  +  LV++ +D + P       Y        +++ F +F+  +
Sbjct: 239 IIRVPTIYCLQELNDGQLVQVFDDWVVPKVDFSAIYHRDRYQPSRIRTFIDFVKSR 294


>gi|23499863|ref|NP_699303.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|23463435|gb|AAN33308.1| transcriptional regulator, LysR family [Brucella suis 1330]
          Length = 297

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE
Sbjct: 1   MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+
Sbjct: 61  AGHTYYHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFTDAVIGQSLIDFCLAHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P 
Sbjct: 121 IVLDVRLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L     I   D   +   ++++       +  P    +++NS ++     + G G 
Sbjct: 180 RPEDLTDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGF 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP +I +D      L+  +++ I     +Y  YP       K++A  +F+
Sbjct: 238 CMLPAFIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289


>gi|187924270|ref|YP_001895912.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715464|gb|ACD16688.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 353

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  VA  GSF  AA  L LS + ++R ++ LE  +G +L  R  R L+LTE G+
Sbjct: 4   LQSMRVFVKVADLGSFVGAAGALDLSTAVVTRHVADLEARLGTRLLNRTTRRLSLTESGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   LE  +  +   + +P G LRI   +  G + L   ++ +   YPD+  
Sbjct: 64  TYLERVRHILDDLEGVEQMVVARNHEPVGTLRIVAPVVFGLHSLAPVVQSYAARYPDVVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D  I + + ++S+S++ R+L T +M   A P YL     P   +
Sbjct: 124 DVTLADRHVDLVEEGFDVGIFVARHMRSASIVTRRLTTGYMTVCATPAYLAQHGTPTRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H  ++           F      D  +     + +  N+   + Q+ + G G+A+L
Sbjct: 184 HLLSHPCLSRPSEQGGEERVFT---GPDGEVRVRPTNAIVANNTEMLRQFALRGMGVAML 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P Y++  +     LV ++ +   P   V   YP  L    K++ F + +  
Sbjct: 241 PSYLIGRDLASGRLVPLLREYRLPQIEVTIAYPSRLHLPAKVRTFIDHLVE 291


>gi|50119295|ref|YP_048462.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609821|emb|CAG73255.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 298

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 142/298 (47%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F VV  +GS T AAEQL  + S ISR +  LE ++G  L +R  R L+L+
Sbjct: 1   MKVTLEELQAFVVVIDTGSITAAAEQLGQTTSGISRALRRLEDKLGTTLLHRTTRRLSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+        V H +E  + ++     +PSG+LRI +     Q+++   + EF   YP
Sbjct: 61  EEGTMFLEHARGVIHAVEHAEEQVLLRHEQPSGRLRINSASAFIQHVIVPLVPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+   + D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 KIILELNTDDFIIDLLEQHIDIAIRIG-TLKDSTIHARPLGASKLRIVASPDYLQQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++ L  H  + F  +        +W          P    L  ++   + Q  + G G
Sbjct: 180 ETVESLADHICLGFTQVESLN----HWPLRHGLQDFYPITPALLASNGEILRQLALRGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  + +++++++     LV I+ +V +  S  VY  Y    +   ++  F +F+  K 
Sbjct: 236 IVRMSNFLIREDLAAGRLVPILTEVTVEASLPVYAVYYRNSQLAARITCFLDFMSEKL 293


>gi|260777805|ref|ZP_05886698.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605818|gb|EEX32103.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 299

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V   GSF+  AE  +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDIILFSQVVELGSFSKVAEINNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LTHGAKNVKQAAQEAMDAVSGFGESISGHIKMSVPSISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIARNGKPIKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + +        E      +               ++  ++ +  + G GIA +P
Sbjct: 183 LVTHNCLQYAYQTTGASEWE--FKSKSGNYIVKVSGSFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV +  +++     +Y  YP   +   K+K     I  +
Sbjct: 241 RCLVYHDIRNGQLVDLFPELVGKRLGIYAVYPFTRQPPNKVKLLIEHIRAR 291


>gi|15597512|ref|NP_251006.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9948349|gb|AAG05704.1|AE004657_11 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 297

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR++    L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRVSLP--LVSGLVLPTLADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPV-DSRLSMRELGEFQLKLVGSPAYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E++  L   D          +  N+  + + + +   GIA LPD+ +
Sbjct: 186 TCLHYRFPNTGRLEEWP-LRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPDFSI 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++      LV +++         +  +P   + + KL+AF +F+  + 
Sbjct: 245 REALREGRLVSVLDAFCERRAQFFLLWPSGRQVSPKLRAFIDFVAPRV 292


>gi|145636072|ref|ZP_01791742.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae
           PittHH]
 gi|145270594|gb|EDK10527.1| pyridine nucleotide transhydrogenase [Haemophilus influenzae
           PittHH]
          Length = 305

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 137/293 (46%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGMMYYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----AMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 236 IVNLPKFILGRAFEKGELIEILPEYKQQKLEIHVIYPNRRHLPIKVRAFIEFL 288


>gi|90414572|ref|ZP_01222546.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90324379|gb|EAS40945.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 306

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 143/291 (49%), Gaps = 15/291 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L +F  V    SFT AA +L +++S+ISR+I+ LE  +G +L  R  R L LT++
Sbjct: 10  FDLNTLEMFARVVECHSFTQAAAELEITKSTISRKIAELEKHLGARLLTRSTRTLVLTKE 69

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++  + +   +E T++E+  S     G L I   +++G  LL   +KEF+ L+P +
Sbjct: 70  GETFYQSCTHIIELIEQTELEVMASHDLIRGPLNIVMPVEVGNGLLGRCMKEFMKLHPQV 129

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L N+ +D+  +  D  +++ + +  SSLI R          A+P YL     P  
Sbjct: 130 TIHLELSNRKVDLIAEGIDLKVQVGE-LDESSLIARTFHYSTRILVASPEYLAEYGTPQL 188

Query: 183 IQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +L   H  I     +           T D+ +         VN+  S ++ C+ G GI
Sbjct: 189 LSDLKAPHQQIKNSSSVR----------TADKNVLAGLPYRFNVNTINSSLEACLDGFGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +P++I K++     LV ++ DV +    + F YPE    + +L+ F +F
Sbjct: 239 TFMPEFICKEHIVTGRLVHVLPDVYSAQIPISFVYPERKLISKRLREFIDF 289


>gi|89110492|ref|AP_004272.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|170083032|ref|YP_001732352.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|194435605|ref|ZP_03067708.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|254038699|ref|ZP_04872755.1| transcriptional regulator [Escherichia sp. 1_1_43]
 gi|256025754|ref|ZP_05439619.1| DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B]
 gi|300950858|ref|ZP_07164740.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300955004|ref|ZP_07167414.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|301028223|ref|ZP_07191492.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|466658|gb|AAB18497.1| unnamed protein product [Escherichia coli str. K-12 substr. MG1655]
 gi|85676523|dbj|BAE77773.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|169890867|gb|ACB04574.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|194425148|gb|EDX41132.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|226839205|gb|EEH71228.1| transcriptional regulator [Escherichia sp. 1_1_43]
 gi|260447464|gb|ACX37886.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|299878709|gb|EFI86920.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|300318046|gb|EFJ67830.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300449834|gb|EFK13454.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|309703927|emb|CBJ03268.1| LysR-family transcriptional regulator [Escherichia coli ETEC
           H10407]
 gi|315138097|dbj|BAJ45256.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           DH1]
 gi|323959452|gb|EGB55109.1| LysR substrate binding domain-containing protein [Escherichia coli
           H489]
 gi|323971379|gb|EGB66618.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
          Length = 323

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|317405414|gb|EFV85727.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 302

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 139/292 (47%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ +R F  +   GS   AAE L +S + +S+Q+  LE  +G  L  R  R ++LT+ G
Sbjct: 3   TFNYMRAFRRIVELGSLAKAAEDLDMSSAGLSKQLRALEAHLGAVLIQRTTRKMSLTDTG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +     +   L+  +  ++  S + SG+LR+   +    ++L   L  FL  YP+++
Sbjct: 63  AAYYAECCRLLDALDALEKSVKRQSGRVSGRLRVNAPVSFALSVLSPLLARFLRQYPELR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L ++++ +D      D +IRLR  +  SSLI R+L ++     AAP YL+    P S+
Sbjct: 123 LDLAMEDRLVDAVGQGFDVSIRLRAQLDDSSLIARRLASLTQVLCAAPSYLERRGLPDSV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L  H+++++                   P+  P  + +QVN+ L +      G GI  
Sbjct: 183 EALRGHDILSYSLADSPGPVPEEDAGQPADPLAGP--ALIQVNNSLMLRDLLEAGLGIGA 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP ++         L R++ ++      VY  YP +     K+KAF +F+  
Sbjct: 241 LPSFLAGPALAAGRLARVLPELPGSPRQVYAVYPTSRHLQPKVKAFVDFLAE 292


>gi|229847429|ref|ZP_04467529.1| putative LysR-family transcriptional regulator [Haemophilus
           influenzae 7P49H1]
 gi|229809667|gb|EEP45393.1| putative LysR-family transcriptional regulator [Haemophilus
           influenzae 7P49H1]
          Length = 295

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 133/299 (44%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L VF  V  +GSF+ AA+QL ++ S++SR +  LE ++G+ L  R  R L LT
Sbjct: 1   MKTTSEELTVFVQVVENGSFSRAAKQLSMANSAVSRVVKRLEEKLGVNLINRTTRQLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++   +   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGLQYFRRVQKILQDMAAAEAEMLAVHEVPQGILRVDSAMPMVLHLLVPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+ L+     I++     D A+R  + +  S L  R L   H    A+P YL     P
Sbjct: 121 HIQLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSHFRVIASPDYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S + L  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEALANHQCLGFTE--PSSLNTWEVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L D++V ++     L+ +  + IT  +      Y        +L+ F +F+  K R
Sbjct: 236 IACLSDFLVDNDIAEGKLIPLFSNHITDETLPFNAVYYSDKAVNLRLRVFLDFLAEKLR 294


>gi|167822901|ref|ZP_02454372.1| LysR family transcriptional regulator [Burkholderia pseudomallei 9]
          Length = 409

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 92  MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 151

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 152 EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 211

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 212 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 270

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 271 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 328

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 329 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 383


>gi|167561683|ref|ZP_02354599.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167568920|ref|ZP_02361794.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 324

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 139/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  + KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 61  EGAAYYEHCIKIITEIAETDASFQVGNRKPSGALRVHMPSSLGRRLVIPALPIFHQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 121 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL +H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 180 EIAELAEHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGVVTVNDSDAYVTCGVEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   + +L  ++         +   YP     + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGSLREVLPGFNPKPKPISIVYPNNRHLSAKVRVFADWIAE 292


>gi|152969739|ref|YP_001334848.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954588|gb|ABR76618.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 301

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 131/296 (44%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L+ F  V  +GSFT AA+ L++  +++S+ I  LE  +G+ L  R  R +T+T 
Sbjct: 1   MDRFSALKAFTRVVEAGSFTRAADSLNMPNATLSKTIQQLEAHLGVSLLQRTTRRITVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     +   LE        +  KP G LRIA       ++L   L +F+  +PD
Sbjct: 61  EGREYYEKARCLLEDLEEIDASFNTARNKPKGHLRIAIGGSTACDVLIPLLADFMTSWPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L + +K  D+     D AIR   P++ S+LI RK+    +   A P YL+    P 
Sbjct: 121 IRINLQVADKPADLISGNIDSAIR-GGPMEDSTLIARKIGEATLVTCATPGYLQRYGTPA 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           S  EL   H LI++  L P     F +  T      E +    L +N   + +     G 
Sbjct: 180 SPDELHHGHRLISY--LSPASGRAFPFRFTRHGVSTELKTEPHLGINESNAHIAAGEAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI     Y +K    +  LV I+       +  +  Y        +L+ F +++  
Sbjct: 238 GIVQTFTYSLKPALASGELVEILSAWRPAPYPFHVVYARHRHVPPRLRVFIDWLVA 293


>gi|13472623|ref|NP_104190.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023369|dbj|BAB49976.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 299

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 141/297 (47%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G  L  R  R  ++TE
Sbjct: 1   MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGALLLNRTTRQFSMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  SE+  ++++    ++ESS    G+++++         +  +L +F   +PD
Sbjct: 61  AGHTYYRRASEIVREVDSLADAVRESSGDVRGRIKLSAPRTFADAPIGQSLIDFAKQHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + LD++ +D+  +  D A+R+ + +++SSLI R+L    +   A+P  +     P 
Sbjct: 121 IVLDIQLDDRFVDLVEEGFDLAVRISR-LENSSLIARRLAPFSVKLCASPELIAKHGMPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L     I   D   + + ++ +    +  +       ++VNS ++     + G G 
Sbjct: 180 RPQDLGHMPCIV--DTNGRGLNNWAFKGDNNDQLSVAVAGPIEVNSPMAARAAALSGLGF 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LPD+I   +     LV  ++D I     ++  YP       K++ F +F+    R
Sbjct: 238 CILPDFIASPDLKSGQLVTALDDRILSGGGIFAVYPHRRYLPAKVRVFVDFLVQWFR 294


>gi|300705531|ref|YP_003747134.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299073195|emb|CBJ44553.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 312

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+
Sbjct: 1   MDRLQSMRVFAKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   +V   ++  +      S    G LRI   +  G ++L   L  F  LYP+
Sbjct: 61  VGETYLQRCQQVLLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P 
Sbjct: 121 VTFDVALSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMIMAATPAYLRQHTTPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +++  H +I      P+   ++   A   + I  P    L  ++   + +  +   GI
Sbjct: 181 RAEDITDHRVIAMWH--PQLRHEWEMSAPDGQSIAVPVQPSLVTSNAELMHRAVLADMGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L  Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A
Sbjct: 239 AILSSYMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQA 294


>gi|116696195|ref|YP_841771.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530694|emb|CAJ97041.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 306

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + +F  V   GS + AA  L LS +  S+++  LE E+G++L +R  R L  T +G  L
Sbjct: 6   DIGLFLRVLDLGSISAAARSLDLSVAVASQRLQRLERELGVRLLHRTTRRLHATPEGVVL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE     L+++    SG LR+ T+   G+  +   L EFL L+P + + +
Sbjct: 66  AEQGRALVDDLEALGTSLRQAGTGVSGTLRVTTSSSFGRLYISPLLPEFLALHPGLTLSV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+     D AIR+   +  S+L+ R+L        AAP YL+    P + Q+L
Sbjct: 126 NLTDNVLDLVSAGFDLAIRIG-VLDDSTLVARRLANNRRLLCAAPDYLRRRGTPRTPQDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +       +  + +         I       ++ N+   +    + G GIAL   
Sbjct: 185 ARHDCLVLVGSQGR-QDVWRLGDGAGGEIAVRVRGRIEANTGELLSDAALAGFGIALHST 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + V  +     LV+++ D       +Y   P+      +++AF +F+  +  D
Sbjct: 244 WHVCADLRAGRLVQVLPDYPLADTGIYAVMPQRRLVPPRVRAFVDFLAGRFGD 296


>gi|320183471|gb|EFW58320.1| LysR family transcriptional regulator YhjC [Shigella flexneri CDC
           796-83]
          Length = 323

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + +NLL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+        S L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGSMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|241662641|ref|YP_002981001.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240864668|gb|ACS62329.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 303

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 140/294 (47%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +++LR+F  VA    FT AA+QL + + ++S  I  LE  +G +LF R  R ++LT+
Sbjct: 1   MDRFEQLRIFIRVAHCAGFTPAADQLGVPRPTVSLAIQQLEARLGTRLFNRTTRRVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +    E  + + +  +    G+LR+     + +  +   L  F   +P 
Sbjct: 61  DGEVLLERAIALVADSEELEQQFRPRAQALQGRLRVDLPSRIARRQIAPALPTFFAQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ ID+  D  DCA+R+ + + S++L  R L ++ +   A+P YL +   P 
Sbjct: 121 IELELGSSDRSIDLVRDGIDCALRIGE-LSSTNLGARSLGSLKLINCASPTYLSSNGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  + +          + W A         R + +  N+  + + YC+ G G+
Sbjct: 180 CPADLPQHLAVNYVSSTSGRAVPWEWTADGHLQTVMMR-ARVSANNAETYIAYCLAGMGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P + V+++    +LV ++ D   PS  V   YP     + +++ F N++  
Sbjct: 239 IQIPAFDVREHLEVGDLVEVLLDWPAPSMPVQIVYPHRRHLSRRVQIFSNWLAE 292


>gi|238799135|ref|ZP_04642589.1| Transcriptional regulatory protein [Yersinia mollaretii ATCC 43969]
 gi|238717006|gb|EEQ08868.1| Transcriptional regulatory protein [Yersinia mollaretii ATCC 43969]
          Length = 297

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++          LE     L + +   SG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIADLEQELESLVQLNGTASGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 LELVVDNGFVDIVEGRFDAGIRLGESVDKDMIAVRIGPDMRMAVVGAPSYFAANPVPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W    +      R+   +  N     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEKEGKPLRVRVEGQVTFNQQAERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V+D   +  L+++++D        Y  YP   ++        + +
Sbjct: 243 CIPEDRVQDYIKSGELIQVLQDWCPSFPGYYLYYPSRKQHPPAFALMIDAL 293


>gi|303253240|ref|ZP_07339389.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248211|ref|ZP_07530239.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307261669|ref|ZP_07543336.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|302647922|gb|EFL78129.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855388|gb|EFM87563.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306868661|gb|EFN00471.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 297

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 132/302 (43%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+
Sbjct: 1   MDRITAIQVFLTVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       + +      +  G L+IA+    G   L   ++ FL  +P 
Sbjct: 61  AGEQAVEYCKKMTELTSAIEQDFLTKQGELRGSLKIASNAAFGGTHLLNAIRTFLAKHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL       
Sbjct: 121 LNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPTYLAQHGTIH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL  H  +   ++  K            +       S L +N   +++ + +   GI
Sbjct: 180 SPQELANHRYLAHANVNRKEWT----FIKDGQETVLELTSQLTINDTGALLNFTLADGGI 235

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--- 295
           A+LP Y ++       L  ++ D   P++ VY  YP   +    +++F +F+  +     
Sbjct: 236 AMLPKYFIEQQLKNKQLQIVLPDWQMPTYQVYAVYPSRRQLPQTVRSFVDFLVEEFEGKG 295

Query: 296 DW 297
           DW
Sbjct: 296 DW 297


>gi|225024636|ref|ZP_03713828.1| hypothetical protein EIKCOROL_01513 [Eikenella corrodens ATCC
           23834]
 gi|224942599|gb|EEG23808.1| hypothetical protein EIKCOROL_01513 [Eikenella corrodens ATCC
           23834]
          Length = 298

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 8/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  SGSFT AAEQL +S    S+ ++ LE  V  +L YR+ R L+LTEQG   +
Sbjct: 7   MKVFCQVVHSGSFTRAAEQLDISVPMASKHVAHLEKSVNARLLYRNNRRLSLTEQGEAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R        LE        S+ +  G+LR++  +     +  G + E+   YP++ + L 
Sbjct: 67  RDCLSALDLLEQAAARAAGSTARVQGRLRVSIPVWFANPVFAGWITEYRRRYPEVSLHLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N  +++  D  D A+RL K   + +LI R L  I  H  AAP YL     P + Q+L 
Sbjct: 127 LTNHSVNLDGDGEDVALRLSKQ-PAENLIARALAKIDFHLVAAPAYLAEHGTPAAPQDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I         +     L            + +  N+   + Q    G+GI  LP++
Sbjct: 186 QHQAILPSYTDVSALT----LQGRGESHNIELQAAIHSNNTQMLYQLVCAGAGIGYLPEW 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +++ +     L R++ D  T     Y  Y +    + K+++F +F+  KA
Sbjct: 242 LLRADLQTGRLRRLLPDHRTAPVPFYAVYTQRKLLSAKVRSFIDFMVEKA 291


>gi|260460665|ref|ZP_05808916.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259033770|gb|EEW35030.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 299

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 141/297 (47%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G  L  R  R  ++TE
Sbjct: 1   MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGALLLNRTTRQFSMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  SE+  ++++    ++ESS    G+++++         +  +L +F   +PD
Sbjct: 61  AGHTYYRRASEIVREVDSLADAVRESSGDVRGRIKVSAPRTFADAPIGQSLIDFAKQHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + LD++ +D+  +  D A+R+ + +++SSLI R+L    +   A+P  +     P 
Sbjct: 121 IVLDIQLDDRFVDLVEEGFDLAVRISR-LENSSLIARRLAPFSVKLCASPELIAKHGMPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L     I   D   + + ++ +    +  +       ++VNS ++     + G G 
Sbjct: 180 RPQDLGHMPCIV--DTNGRGLNNWPFKGDNNDQLSVAVSGPIEVNSPMAARAAAISGLGF 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LPD+I   +     LV  ++D I     ++  YP       K++ F +F+    R
Sbjct: 238 CILPDFIAAPDLKSGLLVTALDDRILSGGGIFAVYPHRRYLPAKVRVFVDFLVQWFR 294


>gi|187924756|ref|YP_001896398.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715950|gb|ACD17174.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 312

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 136/300 (45%), Gaps = 13/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L L  +  D+  +  D ++ L   +  S L+ ++L +    A A+P YL+    P 
Sbjct: 121 VQIELTLAQRMPDLLDEGFDVSLTLATSLPDSGLVSQRLGSAFSIACASPAYLERHGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS----CLQVNSYLSIMQYCVL 237
           +  +L +H  +    ++        W+   D P GE  I+      QVN   ++      
Sbjct: 181 TPADLTRHECL---QMVTPVFPTEKWIF--DGPNGEETIALGATSFQVNVAEAMAVAVSS 235

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+ L+P Y          LV ++ +  +    +Y  YP       K++ +  F+  + 
Sbjct: 236 GMGVGLIPIYSAISGLRKGELVWLLPEYTSQPMNLYALYPSRQYLDAKIRTWVEFLRDEL 295


>gi|146293789|ref|YP_001184213.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145565479|gb|ABP76414.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 337

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 133/288 (46%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G  L+
Sbjct: 32  IAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGHLLY 91

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E     +   +    G L++  +   G   +   L  F+  +P++++Q+ 
Sbjct: 92  LQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMAKHPELELQVS 151

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   ++L 
Sbjct: 152 LLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLVASPDYVAKHGEPTRPEQLV 210

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            HN + +     +  E   W         E  +S   +V++  ++    + G G+  L  
Sbjct: 211 DHNCLVY---QGEWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVYLAS 267

Query: 247 YIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+++D      LV ++ED  +T    +   YP       K+ AF  FI
Sbjct: 268 YLMEDEITKGTLVPLLEDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFI 315


>gi|241664937|ref|YP_002983297.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|309780257|ref|ZP_07675008.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|240866964|gb|ACS64625.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
 gi|308920960|gb|EFP66606.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 312

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 135/296 (45%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+
Sbjct: 1   MDRLQSMRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +  +++   ++  +      S    G LRI   +  G ++L   L  F  LYP+
Sbjct: 61  VGETYLQRCAQILLDIDEAESLATSRSQALVGGLRIVAPVMFGLHVLPMLLARFQQLYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P 
Sbjct: 121 VTFDVALSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +++ +H +I      P+   ++       + I  P    L  ++   + +  +   GI
Sbjct: 181 RAEDIAEHRVIAMWH--PQLRHEWEMSTPDGQSISVPVQPSLVTSNAELMHRAVLADMGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L  Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A
Sbjct: 239 AILSSYMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYMLAQA 294


>gi|86138825|ref|ZP_01057397.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85824472|gb|EAQ44675.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 307

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/283 (35%), Positives = 166/283 (58%), Gaps = 4/283 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F+ VA +GS THA ++L+LSQS++SRQ+  LE  +   LF+RHARGL LTEQG  L 
Sbjct: 12  LRIFHAVADAGSLTHAGDKLNLSQSAVSRQVRALEESLNATLFHRHARGLILTEQGELLF 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T  +  +LE     +++S  +  G+LR+ TT   G   L   L +    YP+++I L+
Sbjct: 72  DATKSMSTRLEAASARIRDSEEEVFGELRVTTTFGFGTLWLAPRLTKLFEQYPNLKIDLM 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+ + +D+ M  AD AIR+++P Q+  LI+++L+T+ M  YA+  YL +   P + +++ 
Sbjct: 132 LEERVLDLPMREADVAIRMKEPSQAD-LIRKRLMTVQMKLYASRKYLDHNGTPEAAEDIK 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H LI       +  +  +    V R +     S L VN+Y  ++Q  +   GI +LPDY
Sbjct: 191 YHRLICQNQ---RSAQVGSASVLVQRLLTHNPGSLLTVNNYFGVLQGVLHDLGIGILPDY 247

Query: 248 IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +D P+LV ++ +       VY  YPE L+++ ++ AFR+F+
Sbjct: 248 VTEDFPDLVEVLPNEENSVVPVYLAYPEELRHSQRVSAFRDFV 290


>gi|187930747|ref|YP_001901234.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187727637|gb|ACD28802.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 312

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 135/296 (45%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GSF  AA+ L +S + ++R ++ LE  +G +L  R  R L+LT+
Sbjct: 1   MDRLQSMRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +  +++   ++  +      S    G LRI   +  G ++L   L  F  LYP+
Sbjct: 61  VGETYLQRCAQILLDIDEAESLATSRSQALVGGLRIVAPVMFGLHVLPMLLARFQQLYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ IDI  D  D  I + +    S L+ R++++  M   A P YL+    P 
Sbjct: 121 VTFDVALSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +++ +H +I      P+   ++       + I  P    L  ++   + +  +   GI
Sbjct: 181 RAEDIAEHRVIAMWH--PQLRHEWEMSTADGQSISVPVQPSLVTSNAELMHRAVLADMGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L  Y+ +   ++  LVR++     P  ++   YP       K++ F +++  +A
Sbjct: 239 AILSSYMARPDLESGRLVRLLPQYKLPQRSLSLVYPSRKFLPTKVRTFIDYMLAQA 294


>gi|70730265|ref|YP_260004.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344564|gb|AAY92170.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 304

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 137/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AA+ L +  +S++  I  LE  +G++L +R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFAKAADSLQMPPASVTILIKQLEAHLGVQLLHRTTRQVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++    +   LE ++     +   P G LRI   + +G+ L+   L EF   YP 
Sbjct: 61  DGAAYYQRCVRLLADLEESEAAFSLARHNPRGLLRIDMPVGIGRLLVIPALPEFSARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ L+++ +D+  +  DCA+R   P    SL+ R L  +     A+P YL+    P 
Sbjct: 121 IELEIGLNDRPVDLIREGVDCALR-GGPALDESLVARPLAQLQQVTCASPGYLRQRGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + QEL  H ++ +   +        +      +P+  P+   +  NS    +  C  G G
Sbjct: 180 TPQELQGHQMVEYFSNVSGKRYGLEFFFAGQLQPVQLPKRVAM--NSADGYLAACEAGYG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P Y V     +  L R++ED   P+  +   YP     + +L+ F +++  
Sbjct: 238 LIQTPYYHVARQLQDATLQRVLEDYPLPALPLTALYPPQRHLSTRLRVFIDWLVE 292


>gi|157373096|ref|YP_001481085.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157324860|gb|ABV43957.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 297

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A   SF  A E+L +S S++ + ++ LE  +G++LF R  R + LTE
Sbjct: 1   MDSLSGLLAFVRAAELHSFVAAGERLGISASAVGKSVARLEESLGVRLFNRSTRRINLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  ++E  + E+   S  P GKLR++    +G  +L   L +F  LYP+
Sbjct: 61  EGALFFERCQRIVSEIENAEAEMARISDAPRGKLRVSMP-AIGYRMLVPLLADFSELYPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +  +++ +D+  +  D A+R    +  S L+ R+L    +    AP Y +    P 
Sbjct: 120 VELDVDFNDRMVDLIAEGIDVAVRSGD-LADSRLMARRLGPFRLILAGAPEYFQRRGMPQ 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + +     + ++++  L     P+       L  NS  +++     G GI
Sbjct: 179 VPEDLLSHACLRYRYPGGQQLQEWT-LFADGEPVSLRVPVTLSCNSIEALIHATQEGLGI 237

Query: 242 ALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LPD+      +   L  +++            +P +     K++ F +++
Sbjct: 238 AYLPDFTLCQAANAGRLTAVLDQYTQEQGFFSALWPSSRHMLPKVRVFVDYL 289


>gi|146281692|ref|YP_001171845.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|25136593|emb|CAD44482.1| LysR protein [Pseudomonas stutzeri]
 gi|145569897|gb|ABP79003.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501]
          Length = 307

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 142/297 (47%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAAETLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  +S  P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAAYYERVVRLLADMDDAETSLSGASTLPRGRLRVDVPSPLARMILVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +D+  +  DC +R    I   SL+ R++  + +  YAAP YL+    P 
Sbjct: 121 IQLDMGVSDRRVDLIDENVDCVVR-GGDITDQSLVARRVGDLRLGVYAAPGYLERAGTPR 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLG 238
             +EL+   H ++ F  L  +  + F +    +    E      L V+   + +   + G
Sbjct: 180 HPRELENTHHRIVGF--LWARAGKVFPYAMHGNGERVEVLGQYVLAVDDGNAYLAAGLAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  LPDY+ K++     LV + E        +Y  +P     + KL+ F +++  
Sbjct: 238 LGILWLPDYMAKEHLARGELVLLFEHWQLEPMPLYVAFPPNRHVSAKLRVFIDWVAE 294


>gi|145642219|ref|ZP_01797786.1| lysR-family transcriptional regulator [Haemophilus influenzae
           R3021]
 gi|260583197|ref|ZP_05850976.1| transcriptional regulator [Haemophilus influenzae NT127]
 gi|145273079|gb|EDK12958.1| lysR-family transcriptional regulator [Haemophilus influenzae
           22.4-21]
 gi|260093754|gb|EEW77663.1| transcriptional regulator [Haemophilus influenzae NT127]
 gi|309973858|gb|ADO97059.1| Transcriptional regulator CrgA [Haemophilus influenzae R2846]
          Length = 295

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 132/299 (44%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L VF  V  +GSF+ AA+QL ++ S++SR +  LE ++G+ L  R  R L LT
Sbjct: 1   MKTTSEELTVFVQVVENGSFSRAAKQLSMANSAVSRVVKRLEEKLGVNLINRTTRQLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++   +   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGLQYFRRVQKILQDMAAAEAEMLAVHEVPQGILRVDSAMPMVLHLLVPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+ L+     I++     D A+R  + +  S L  R L   H    A+P YL     P
Sbjct: 121 HIQLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSHFRVIASPDYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S + L  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEALANHQCLGFTE--PSSLNTWEVLDAQGNPYKI--SPYFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L D++V ++     L+ ++ +     +      Y        +L+ F +F+  + R
Sbjct: 236 IACLSDFLVDNDIAEGKLIPLLTEQTANKTLPFNAVYYSDKAVNLRLRVFLDFLVEELR 294


>gi|26987899|ref|NP_743324.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24982607|gb|AAN66788.1|AE016308_1 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 298

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 127/301 (42%), Gaps = 8/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V    SF  AA +L +S ++++R +S LE ++G+KL  R  R + LTE
Sbjct: 1   MDQIHLMKVFVAVGELESFAAAARRLDISPAAVTRAVSALEEQLGVKLLLRTTRSVRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +    T  +   +          +  P G L +   I  G+  +   +  +L  YP+
Sbjct: 61  AGGRYLEDTRHILASIHEANEAAAGINATPRGDLAVTAPILFGKKFVMPCIVRYLQQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +     ++ +++  +  D A+R+  P+  S L   ++  +     A+P YL     P 
Sbjct: 121 VDVSAFFLDRVVNMVEEGMDVAVRIG-PLPDSGLKALRVGRVRRMLCASPDYLARHGVPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H +I   +L P+    F      D P        L V S    +     G GI
Sbjct: 180 HPSDLAGHAIIGTTNLSPRAGWRFG---VTDEPTLVRMKPRLTVTSNDGAIAAASGGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A L  Y V D   +  L  ++ +     + ++  + E+   + K++AF + +    RD +
Sbjct: 237 ARLLSYQVADELASGQLQVLLAEYEEAPWPIHVLHRESKYGSAKVRAFIDMLAQGLRDQQ 296

Query: 299 F 299
            
Sbjct: 297 L 297


>gi|331649342|ref|ZP_08350428.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M605]
 gi|331041840|gb|EGI13984.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M605]
          Length = 323

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 139/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+        S L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGSMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|254189324|ref|ZP_04895835.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157937003|gb|EDO92673.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 300

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 136/293 (46%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRFKQIETFAAVAAKGSLSAAAHAEGVAPAIIGRRLDALEERLGVKLLVRTTRKLTLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + ++  +  +    VK SG LR++     G+  +   +  F   +PD
Sbjct: 61  EGSAFLEDCQRIINDMQNAEASVSAGGVKASGHLRVSAPAGFGRRHVAPLVPPFTGAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+RL + +  SSL+  KL        A+P YL +   P 
Sbjct: 121 VSVTLDLSDRMVDLVNEGFDCAVRLGE-LPDSSLVSLKLGENRRVCVASPAYLAHAGMPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L +HN +    L     +   W       +   R+S  ++ +    + ++C+ G G
Sbjct: 180 TLDDLARHNCLA---LAANANQQRGWSFVDGGKVVSIRVSGTMECSDGAVLHEWCLEGHG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGADIAAGRLVSVLDAFAAPPVGIHAVFPQRRHLPLRVRLFLDFL 289


>gi|187918816|ref|YP_001887847.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717254|gb|ACD18477.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 344

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 139/298 (46%), Gaps = 10/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F  V ++GSFT A +QL +++S++ + I+ LE  + ++L +R    L LT+ G
Sbjct: 44  NINDIATFVTVVKAGSFTSAGQQLGITRSAVGKIIARLEARLQVRLLHRTPHSLGLTDDG 103

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S  +   +++   LE T+  +   S  P+G LRI+  I LG   +   +  FL  +P + 
Sbjct: 104 SVFYGRCTQILEDLEETETAMAVRSATPAGSLRISLPIALGHRQVLPIIALFLERWPAVS 163

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            ++   ++ +D+  +  D AIR+ +P   S LI R + T  +   A+P YL     P+S 
Sbjct: 164 AEVSFTDRFVDLVDEGIDVAIRVGEPKPDSRLIARTVATQKLITCASPVYLAKRGAPVSP 223

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + F            WL              L+++S  +++   V G GI  
Sbjct: 224 LDLAHHECLQFVS----AGRPQPWLFAGVGQQAVEAGGRLKMDSAEALIGAAVNGVGIIN 279

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LP+Y+V +     +L  +++     +  +   YP     T K++ F + +      W+
Sbjct: 280 LPNYLVANEIRQGHLQPLLQSFAAQALPIRAIYPTRRHLTPKVRLFIDELIEA---WQ 334


>gi|84389435|ref|ZP_00991241.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01]
 gi|84376950|gb|EAP93823.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01]
          Length = 301

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 139/296 (46%), Gaps = 9/296 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++AR G+FT AAE+L +S+S +SRQ+S LE ++G+ LF R  R L LT 
Sbjct: 4   QINLSDIRSFVLIARLGNFTKAAEELDVSRSHVSRQVSSLEKQMGVTLFIRTTRTLRLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G  L+    +    ++   I   +   +  G +++      LG+ ++   + EF+ LYP
Sbjct: 64  AGQDLYARCEQALDNIDQALIAAVDDVEEVRGDIKVNCVGGYLGEVIIADLVNEFMQLYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI I L   +  +D+  D  D A R+   ++ +  I RKL+ I M   A+P Y     +P
Sbjct: 124 DISISLDFSSNRVDLIEDAFDIAFRMGS-LEDAGFIARKLLDIEMGTLASPEYFARKGKP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H+ +T           F  L    + +       LQ  +   ++Q    G+G
Sbjct: 183 SHPKDLIHHDCLT----GSVRKWSFQALDDTKKTVDVHVTGRLQCKNGRVLVQGAKSGNG 238

Query: 241 IALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P  Y +++  +  L+++ E+ + P       Y        +++ F +F+  +
Sbjct: 239 IIRVPTIYCLQELNDGQLLQVFEEWVVPKVDFSAIYHRDRYQPSRIRTFIDFVKGR 294


>gi|145631679|ref|ZP_01787442.1| lysR-family transcriptional regulator [Haemophilus influenzae
           R3021]
 gi|319897817|ref|YP_004136014.1| lysr-family transcriptional regulator [Haemophilus influenzae
           F3031]
 gi|144982702|gb|EDJ90238.1| lysR-family transcriptional regulator [Haemophilus influenzae
           R3021]
 gi|317433323|emb|CBY81699.1| LysR-family transcriptional regulator [Haemophilus influenzae
           F3031]
          Length = 295

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 132/299 (44%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L VF  V  +GSF+ AA+QL ++ S++SR +  LE ++G+ L  R  R L LT
Sbjct: 1   MKTTSEELTVFVQVVENGSFSRAAKQLSMANSAVSRVVKRLEEKLGVNLINRTTRQLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  R   ++   +   + E+      P G LR+ + + +  +LL     +F   YP
Sbjct: 61  EEGLQYFRRVQKILQDMAAAEAEMLAVHEVPQGILRVDSAMPMVLHLLVPLAAKFNERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+ L+     I++     D A+R  + +  S L  R L   H    A+P YL     P
Sbjct: 121 HIQLSLVSSEGYINLIERKVDIALRAGE-LDDSGLRARHLFDSHFRVIASPDYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S + L  H  + F +  P  +  +  L     P           +S   +   C+ G G
Sbjct: 180 QSTEALANHQCLGFTE--PSSLNTWTVLDAQGNPYKI--SPHFTASSGEILRSLCLSGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L D++V ++     L+ ++ +     +      Y        +L+ F +F+  + R
Sbjct: 236 IACLSDFLVDNDIAEGKLIPLLTEQTANKTLPFNAVYYSDKAVNLRLRVFLDFLVEELR 294


>gi|218702286|ref|YP_002409915.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|331659828|ref|ZP_08360766.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA206]
 gi|218372272|emb|CAR20135.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|315295795|gb|EFU55112.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
 gi|331053043|gb|EGI25076.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA206]
          Length = 323

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR     +   +I R L  + +   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGASPED-GVIARPLGKLTVVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLASHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|190150512|ref|YP_001969037.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|189915643|gb|ACE61895.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 297

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 133/302 (44%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF +VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+
Sbjct: 1   MDRITAIQVFLMVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       + +      +  G L+IA+    G   L   ++ FL  +P 
Sbjct: 61  AGEQAVEYCKKMTELTSAIEQDFLTKQGELRGSLKIASNAAFGSTHLLNAIRTFLAKHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL       
Sbjct: 121 LNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLSRHGTIH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL  H  +   ++  K            +       S L +N   +++ + +   GI
Sbjct: 180 SPQELANHRYLAHANVNRKEWT----FIKDGQETVLELTSQLTINDTGALLNFTLADGGI 235

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--- 295
           A+LP Y ++       L  ++ D   P++ VY  YP   +    +++F +F+  +     
Sbjct: 236 AMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLPKTVRSFVDFLVEEFEGKG 295

Query: 296 DW 297
           DW
Sbjct: 296 DW 297


>gi|170691786|ref|ZP_02882950.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143070|gb|EDT11234.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 301

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AAE LH+S+++++  +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMRAFVRVVEAGSFTKAAETLHMSKTTVTHLVQQLEARLRVRLLNRTTRRINVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   + +   ++  +  L  +S  P G+LR+     L + +L   L  FL  YPD
Sbjct: 61  DGIAYYERVTRLLADMDDAETSLSSASAAPRGRLRVDVPSPLARLILIPALPAFLARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +D+  +  DC +R  +P    S++ R++  + +  +A+P YL     P 
Sbjct: 121 IQLDMGVSDRTVDMIGENVDCVVRGGEP-NDQSIVARRVADLALGVFASPGYLALAGVPS 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              EL    H ++ F       +         +    + R   L V+   + +   V G 
Sbjct: 180 HPAELENSHHRIVGFSWGRAGNLYPAVMRRAGETAKVQGR-YALAVDDGNAYLAAGVAGL 238

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP Y+ K +     LV + ED       +Y  YP     + KL+ F +++  
Sbjct: 239 GIMWLPRYMSKAHLKRRELVALFEDWQLDPMPLYIAYPPNRHVSAKLRVFIDWVVE 294


>gi|83647489|ref|YP_435924.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83635532|gb|ABC31499.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 296

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 133/284 (46%), Gaps = 7/284 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V + G F+ A  +L+LS+  +S+ +  LE  +G +LF+R  R + LT  G   +
Sbjct: 1   MRAFCAVVQEGGFSAAGRKLNLSKVLVSKYVGQLEDRLGARLFHRTTRKVRLTPTGEAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  +L+  +  +++   +P G LRIA      +  L   +   L  YP + + + 
Sbjct: 61  LRVSPLLRELDDIEARVRDEHGEPEGLLRIAAPASFAEIHLMPLVALMLEKYPGLTLDVR 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A+R+   +Q SSL+ +KL  I +   A   YL+  + P S  +L 
Sbjct: 121 LADRYVDLLEEQVDLAVRIGY-LQDSSLVAQKLADIPIVWCAGAAYLERRKAPQSPDDLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + F         D+  +        +P    + VNS  +  +  + G G+A LP +
Sbjct: 180 EH-CVIFDSNYSGG--DYWPVPREGGVTRQPMRKRVSVNSARAAKELALAGMGLARLPAF 236

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           ++ D   +  L  ++++    +  VY  YP     + +++ F  
Sbjct: 237 VIGDELASGELRPVLQEYWPEASAVYAVYPHRRHLSARVRLFVE 280


>gi|227114283|ref|ZP_03827939.1| LysR family transcriptional activator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 302

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 133/291 (45%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA +  L++SS+S +IS LE ++G++L  R  R L LT  G 
Sbjct: 5   LQDMALFALVAECGSFTQAARKAGLAKSSLSLRISQLEQQIGLRLLNRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + +Q     PSG+LRI +   LG  LL     EF   +P + +
Sbjct: 65  RYLIHCQEMLQASERADLAIQRLRDNPSGRLRITSPAGLGSTLLARLTAEFQQHFPAVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +++ +  ID+  +  D A R  KP   SSLI R L     +  A+P YL      L  Q
Sbjct: 125 DVLISDDVIDLVQEGFDVAFRTGKP-HDSSLIGRSLGQTPRYLLASPDYLARHLALLHPQ 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I         +   + L     P           ++ L   +  + G+GI LL
Sbjct: 184 QLQQHRCIAHHAWTEWLLHRGSELYRWLLPDSH------ITDNLLYARECAIAGAGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PD++  D   +  LVR++ D    +  +Y  YP    N+  L  F +F+  
Sbjct: 238 PDFLCLDEAVSGKLVRVLPDWQVEANELYLVYPSRKLNSPALACFIDFVLQ 288


>gi|82545885|ref|YP_409832.1| transcriptional regulator LYSR-type [Shigella boydii Sb227]
 gi|81247296|gb|ABB68004.1| putative transcriptional regulator LYSR-type [Shigella boydii
           Sb227]
          Length = 323

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + +NLL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|254499077|ref|ZP_05111769.1| LysR family transcriptional regulator [Legionella drancourtii
           LLAP12]
 gi|254351704|gb|EET10547.1| LysR family transcriptional regulator [Legionella drancourtii
           LLAP12]
          Length = 312

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 130/296 (43%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   GSFT A+ +L +++S +SR+I+ LE  +G++L  R  R L+LT+ G
Sbjct: 9   DLNDLYFFCRVVDEGSFTQASLKLEMTKSKLSRRIAELENHLGVRLLNRSTRKLSLTDVG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             ++  +  + ++    Q    ++  KP G++ +       Q+     + +F+  YPD++
Sbjct: 69  HLVYEYSKTMVNQAIFAQEVAIQAQSKPKGRIYVTCPTLFAQSDFNHIIIDFMRQYPDVR 128

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   ++ +D+  +  D A+R     +  S+L+ RKL          P YL+      S
Sbjct: 129 INLYASDRKVDLIEEGFDLALRFQTNELDDSTLVVRKLGESAHCLVGTPSYLQGHFPLKS 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL   + +  G                 + I  P    L+   +  + Q  +   GI 
Sbjct: 189 PTELTGFSWL--GKTRSDGTNQLQLSNANGQKITIPLAPRLESTEWTILKQAALADLGIT 246

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LLP    +       LVRI+ +    + ++Y  YP     T  ++ F +F+  + +
Sbjct: 247 LLPIEYCQQEINAGTLVRILPEWSLSTASLYLIYPSRRGLTPAVRHFIDFVGEETK 302


>gi|167901464|ref|ZP_02488669.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           NCTC 13177]
          Length = 315

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTTIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 61  EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 121 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 180 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 292


>gi|167835644|ref|ZP_02462527.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 294

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 138/287 (48%), Gaps = 7/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGTRFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  Q EL  S+  PSG+LR++       + +   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAQQELSRSAHAPSGRLRVSLP--ALSSPVLPVLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R+L T       +P Y      P +  +L +H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-HDSRLSARRLGTFSQVVVGSPDYFARHGAPRTPADLARH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +           E   S +  N+  + + + + G G+A +PD+ V
Sbjct: 186 ACLLYRFPTTGKLERWPLRPAPGDADVELPKS-MICNNVETRVCFAIRGRGLACVPDFAV 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +D   +  L   +++ +  S + +  +P     + KL+AF +FI  +
Sbjct: 245 RDELASGRLRTALDEYVERSQSFHVLWPSGRHASPKLRAFVDFIAGR 291


>gi|319897018|ref|YP_004135213.1| hth-type transcriptional regulator [Haemophilus influenzae F3031]
 gi|317432522|emb|CBY80880.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           F3031]
          Length = 305

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 137/293 (46%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGMMYYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLEANGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----AMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L  +I+    +   L+ I+ +       ++  YP       K++AF  F+
Sbjct: 236 IANLAKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRAFIEFL 288


>gi|157372916|ref|YP_001480905.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157324680|gb|ABV43777.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 323

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 132/289 (45%), Gaps = 8/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F +VA  GSF+ AA    ++ +++SR I+ LE  +G++LF R  R + LT+ G    
Sbjct: 29  LELFCLVAEVGSFSAAAVSSGITPAAVSRSIARLEDRLGVRLFVRSTRHIHLTDAGKSYA 88

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E    ++  + ++Q   ++P+G LR++         L   L  F   YP IQ+ L 
Sbjct: 89  EQCREAIALIDNAERQIQGQQLEPAGLLRVSIPTPYAHYRLLPVLAAFSQRYPKIQLALN 148

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N ++D++    D AIR   P   S+LI RKL    +   AAP YL     P+  ++L 
Sbjct: 149 LNNANVDLTDGGYDLAIRGYHP-ADSNLIARKLEDAELVVVAAPDYLARAGTPVHPEDLA 207

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVN-SYLSIMQYCVLGSGIALLP 245
           +HN I F   +P   +   W L   ++ I       +  N  +L  +     G G+    
Sbjct: 208 QHNCIQFE--LPSTGKSAPWTLKHHNKSIDVTTRGNVSCNGDFLGGLTLAKHGMGVFQTY 265

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + V D   +  LV ++ +    +      YP     +  L++  +F+ 
Sbjct: 266 RFTVADLLASGELVEVLTEYGGTTRPFIMVYPHQRHKSLALRSLMDFLV 314


>gi|24114789|ref|NP_709299.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 301]
 gi|30065197|ref|NP_839368.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 2457T]
 gi|110807383|ref|YP_690903.1| putative LysR type transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|24054013|gb|AAN45006.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 301]
 gi|30043459|gb|AAP19179.1| putative transcriptional regulator LYSR-type [Shigella flexneri 2a
           str. 2457T]
 gi|110616931|gb|ABF05598.1| putative transcriptional regulator LYSR-type [Shigella flexneri 5
           str. 8401]
 gi|281602878|gb|ADA75862.1| putative transcriptional regulator LYSR-type [Shigella flexneri
           2002017]
          Length = 323

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + +NLL   L EFL  +P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   N+ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHNRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|302186195|ref|ZP_07262868.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 305

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   LE  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLEDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 IRLEIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLQQHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+QEL +H +I +            ++      +       + VNS    +  C  G G+
Sbjct: 180 SLQELAQHQVIEYFSTSTGKRNGLEFMVD-GMDVEHASACSIAVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V     +  LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVATQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWLVE 292


>gi|163760412|ref|ZP_02167494.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
 gi|162282363|gb|EDQ32652.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
          Length = 307

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 137/295 (46%), Gaps = 10/295 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++ +F  V   G F  AAE+  L+ S +S+ ++ LE  +G+KL  R  R L +T +G  
Sbjct: 8   DEIAIFVRVVERGGFAAAAEETGLTPSGVSKAVTRLEDRLGVKLLQRTTRRLMMTAEGEL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     ++   +E+T+ E+  +  KP G +R+       ++ L   L EF   YP+I + 
Sbjct: 68  LLARGRDILAAIESTEAEVMAARGKPRGTIRVNVGTAYAKHRLAPALPEFRERYPEIDLI 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + ++ +D+  +  D AIR   P+  SSL+ R+L        A+P YL    EP    +
Sbjct: 128 ISVADRRVDVIGEQLDVAIRTG-PLTDSSLVARRLGEATRVIAASPAYLAKFGEPKQASD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  +T             W   +D  +    I + +  ++   + +  + G GI  L
Sbjct: 187 LKHHICLTVTGFSRLS----EWPLKIDGKVTPVAIKTAVSCDNADILAEMALAGMGIVRL 242

Query: 245 PDYIVKD---NPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +++ D   +  L  ++ D  ++ +  +    P   ++  +++AF +F+  + R
Sbjct: 243 GSFVIDDALSDGRLKPLLVDCHVSETVPITALMPPGRQHLPRVRAFVDFLVEQTR 297


>gi|311103780|ref|YP_003976633.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758469|gb|ADP13918.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           18 [Achromobacter xylosoxidans A8]
          Length = 302

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 133/298 (44%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RV+  V    +F+ AA+ L L +S++S  +  LE  +G +L  R  R +  T+
Sbjct: 1   MDRIDLFRVYARVVECANFSRAADTLGLPRSTVSAAVQELEGRLGARLLNRTTRQVAPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   +E  +   + +SV P G LR+     +G+ ++   L  FL  YP 
Sbjct: 61  EGAAFYERCLRLVADMEEAENLFRHASVGPGGMLRVDVPGRVGRLIVAPALPAFLEAYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 IDVTLGVTDRAVNLIEEGVDCVLRVG-VLPDSGLVARPIGMLGLINVASPAYLARHGVPS 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +L   H+ + +       +  + WL         P    + VNS  + +  CV G G
Sbjct: 180 TPDDLAAGHSCVNYASPSTGRLAPWEWLDG-GVSRTVPLRGRVTVNSAEAYIASCVAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  +P Y V+       LV +M D       +   YP+    + +++ F +++    R
Sbjct: 239 LIQIPAYDVQPQIAAGELVEVMPDHRPAPMPMTLLYPQRRSPSRRVQVFADWLEALLR 296


>gi|303250066|ref|ZP_07336268.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307246101|ref|ZP_07528183.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307252826|ref|ZP_07534716.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|157837301|gb|ABV82728.1| LysR [Actinobacillus pleuropneumoniae]
 gi|302651129|gb|EFL81283.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306853036|gb|EFM85259.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306859725|gb|EFM91748.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 297

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 134/302 (44%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF +VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+
Sbjct: 1   MDRITAIQVFLMVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       + +      +  G LRIA+    G   L   ++ FL  +P 
Sbjct: 61  AGEQAVEYCKKMTELTSAIEQDFLTQRGELRGSLRIASNAAFGSTHLLNAIRTFLAKHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQLIL +  +++  +  D A+R        + + R L T H    A P YL       
Sbjct: 121 LNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNAVARPLFTCHSLLVATPAYLTQHGTIH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL  H  +   ++  K            +       S L +N   +++ + +   GI
Sbjct: 180 SPQELANHRYLAHANVNRKEWT----FIKGGQETVLELTSQLTINDTGALLNFTLADGGI 235

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA---R 295
           A+LP Y ++       L  ++ D   P++ VY  YP   + +  +++F +F+  +    R
Sbjct: 236 AMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLSQAVRSFVDFLVEEFEGKR 295

Query: 296 DW 297
           DW
Sbjct: 296 DW 297


>gi|161523821|ref|YP_001578833.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351418|ref|YP_001947046.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341250|gb|ABX14336.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335440|dbj|BAG44510.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 322

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 138/295 (46%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++    E  + +      KP+G LR+     LG+ L+  +L  F   YPD
Sbjct: 61  EGAAYYEHCVKI--LSEIAEADASFQKGKPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     AAP YL    EP 
Sbjct: 119 ITLDLGLSDRPVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLRRVTCAAPDYLARHGEPR 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I +L  H  + F     +      W+  +D    E R+ + + VN   + +   + G G
Sbjct: 178 EIADLAGHYAVNF--RATQGGRAVPWVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     + +LV ++ D       +   YP     + K++ F ++I  
Sbjct: 236 MIQPTLFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWIAE 290


>gi|192360613|ref|YP_001983795.1| LysR family transcriptional regulator [Cellvibrio japonicus
           Ueda107]
 gi|190686778|gb|ACE84456.1| transcriptional regulator, LysR family [Cellvibrio japonicus
           Ueda107]
          Length = 299

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 133/292 (45%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ +  F  V R GSF  AA QL +S S +SR +S LE ++G +L YR  R + LT+ G 
Sbjct: 4   WESVEAFIQVIRQGSFAGAARQLQVSNSHVSRLVSQLELQLGTQLLYRTTRQIRLTDAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   ++  L   ++ L     +PSG L+I      G   +   + +F L YP +++
Sbjct: 64  VYFDHCCHLFDGLREAELLLHHYRDQPSGLLKITAATTFGDKFIAPVVNDFQLRYPQLKV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   N+ +++  +  D  IR+   ++ S+L+ ++L     +   +P Y +    P S+ 
Sbjct: 124 SMYFSNRQVELIEEGFDVGIRMG-VLRESTLVAKRLCDRREYIVGSPAYFRRSPAPQSLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ELD HN +            +  L+   +          Q NS  +++   + G G+A L
Sbjct: 183 ELDSHNCLV-------GTRGYWLLSDKGQRKDLVVRGNWQANSGPALLDAALKGIGLAQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           PDY V +   +  L  ++E        V+  YP+      K++ F +F+  +
Sbjct: 236 PDYYVDEFLGDGRLQSVLEQHRYSDTGVWVVYPQQRHLAPKVRLFIDFLVER 287


>gi|78064018|ref|YP_373926.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971903|gb|ABB13282.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 307

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 145/293 (49%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+TE G
Sbjct: 6   NLDDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++    ++   ++    ++  +   P G LRI+++   G++++   L +F   +P + 
Sbjct: 66  ERVYARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHIVAPALLDFTARFPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I    L+ R+L   +    A+P YL     P S+
Sbjct: 126 VRLDLFDRLVDVAGEGYDLDVRIGDEISD-HLVARRLAANYRVLCASPDYLARRGTPRSL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+ +   +   +      W   V       ++   L  N     +Q+ + G GI 
Sbjct: 185 ADLASHDCLAIKE---RDHPFGVWRLNVRGETATVKVGGALSTNHGEVAVQWALAGRGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L   +      +   L R++ D I P+  ++  YPE +  + K++   +F+  
Sbjct: 242 LRSIWEAAPLIERGALCRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDFLVE 293


>gi|209548436|ref|YP_002280353.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534192|gb|ACI54127.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 300

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 128/300 (42%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  V   G F+ AA +L++S + +   +  LE  +G++L  R  R ++LTE
Sbjct: 1   MDRLTSLTVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +S++  +L+         S  P G L++ T+       L   + E++ LYP 
Sbjct: 61  TGKYYYERSSQILAELDEADRTAGALSTTPRGTLKVYTS-SAIVRFLLPVVSEYMELYPS 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +   +  + +D+  D  D  IR   P   SSL+ RKL         +P Y ++ R P 
Sbjct: 120 IALDFSIGERMVDMIEDGYDLVIRTVPP-PDSSLVARKLTPWRHVLVCSPAYFESHRMPQ 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E+  HN + +        E++ +     R            NS   +    + G GI
Sbjct: 179 KPAEVADHNCLQYAYY--PYGEEWRFEDGEGRQESVKIGGNAVSNSAEMLRFLTLNGQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            L P ++V D+     LV+IM D     F++   YP       K++ F + +  +  + +
Sbjct: 237 FLAPSFVVFDDIAEGRLVKIMPDYRPVEFSINAVYPNRSHLATKVRLFIDLLAERFAEHR 296


>gi|186476339|ref|YP_001857809.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192798|gb|ACC70763.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 312

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 138/300 (46%), Gaps = 13/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+  +  D A+ L + +  S L+ ++L +    A A+P YL+    P 
Sbjct: 121 VHLELTLAQRMPDLLDEGYDVALVLAQSLPDSGLVSQRLGSAFSIACASPDYLERNGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
           ++ +L  H  +     +    E      T D P G+  +    S  Q+N   ++      
Sbjct: 181 TLSDLRGHTCLQMITPVMPADEW-----TFDGPNGQETLHLGASTFQINVAEAMAVAVRE 235

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+A+LP Y       +  LV I+ + I+    VY  YP       K++ +  F+  + 
Sbjct: 236 GMGVAVLPIYSAIAGLRSGELVWILPEYISQEMNVYALYPSRQYLDAKIRTWVEFLRDEL 295


>gi|91783793|ref|YP_558999.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687747|gb|ABE30947.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 309

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/301 (30%), Positives = 138/301 (45%), Gaps = 14/301 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +  SGSF  A   L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERMLNGMGVLTAIVDSGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT++G + +     +   LE       + +    G+LR+       + +L   L  F+ 
Sbjct: 61  VLTDEGRRFYEQIVPLLGGLEEAAASAAQGATAVRGRLRVNMDPFFSRLVLGPRLGGFID 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+Q++LI  ++  D+  D  D AIR   P   S+LI RKL+   +   AAP YLK  
Sbjct: 121 RHPDLQLELITRDQLGDMVADGFDLAIRFGDP-PVSTLIARKLLDTRILTVAAPSYLKKH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQY 234
             P +  EL+  KH  I F D  P     F+W     R  I       L VN   ++   
Sbjct: 180 GHPANPAELESGKHVCIKFRD--PLTGYPFSWEFHRGRKKIVVTPQGRLTVNDVGTLHSA 237

Query: 235 CVLGSGIALL----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           CV G G+A +     + +V  +  LV +  D     + +Y  YP       K++AF  FI
Sbjct: 238 CVAGQGVAQILELGAESLVA-SGKLVALFPDWCDEVYPLYALYPSRHHPPAKVRAFFEFI 296

Query: 291 F 291
            
Sbjct: 297 V 297


>gi|83644141|ref|YP_432576.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632184|gb|ABC28151.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 305

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 135/298 (45%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA   SFT AA+ L +S++  +R ++ LE+ +G +L  R  R ++LTE
Sbjct: 1   MDRLTAMQVFAEVAARKSFTAAADNLDMSRAMTTRYVNELESWLGARLLNRSTRRISLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++    +  +    +   +P G +RI T++  GQ  L   + E+L  YP 
Sbjct: 61  AGEACLLRCRQILDLTDDVEAVAGKRETEPYGLIRITTSVAFGQVHLAPVVAEYLKRYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            ++ + L ++ +++  +  D AIR    +   +LI RKL        A+P YLK    P 
Sbjct: 121 TRVDMQLLDRSVNLIEERIDLAIRTTNDL-DPNLIARKLTDCRSAICASPQYLKERGAPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +EL +HN +T+     K    F    T      E     L  N  L++   C+ G+GI
Sbjct: 180 TPRELSEHNCLTYSH-FGKSQWRFTHKKTGAVEAAEV-TGNLSANEVLALTNACIAGAGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP Y+V D      L  ++ D       ++  Y         L+   +F+  +  D
Sbjct: 238 AMLPTYMVADYVRRGELSALLTDWEALRLGMFGVYQSRKHMPATLRTLLDFLVERFGD 295


>gi|157376742|ref|YP_001475342.1| hypothetical protein Ssed_3610 [Shewanella sediminis HAW-EB3]
 gi|157319116|gb|ABV38214.1| conserved hypothetical transcriptional regulator, LysR family
           [Shewanella sediminis HAW-EB3]
          Length = 299

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 137/293 (46%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V + GSF+ AA    ++ + + + I  LET +G KL  R  R  +LTE
Sbjct: 1   MDKLKSMQVFVNVVQHGSFSRAAINFAVTSTMVGKHIKFLETHLGTKLLNRTTRKQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   +   +  LQ    KP G++RI + +  G  LL   + +FL  YPD
Sbjct: 61  AGQLYYLECQRILDDIAEAENSLQALENKPKGRIRINSPVTFGNILLAPIVADFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L LDN  ID   D  D  IR+ + + +SSLI R++    M   A+P YL   R PL
Sbjct: 121 INVELTLDNDLIDPLHDPVDVVIRIGE-LANSSLIARQIAVYEMMFCASPDYLARHRVPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H  + F     +     +    +D    + + S L  NS  ++    + G+GI
Sbjct: 180 SLNDLASHQCLGFSYGDIQS----SLALRIDTSAFDTQHSRLTSNSGQALKVAALKGTGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L P  ++ +     +L+ I+ + +     ++  Y ++     K + F  F+ 
Sbjct: 236 LLQPRLLLSEELGRGDLIEILSEQVPSPTPIHLMY-KSKALPLKTRVFIEFVL 287


>gi|309779596|ref|ZP_07674355.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308921537|gb|EFP67175.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 301

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 145/296 (48%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V   G F+ AA    ++ S++S+ ++ LET +G +L  R  R L LT +G+
Sbjct: 9   FGEMEVFVRVVEEGGFSAAARACRMTPSAVSKLVARLETRLGARLVNRSTRRLQLTPEGA 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +  V   L+  + E   +  +PSG+LRI + + +G ++L   +  FL  +P++ +
Sbjct: 69  AFYERSVTVLADLDEAERE-ASAGAQPSGRLRINSNVPVGTHVLLPIVPAFLACHPEVSL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  D  D A+R   P++SS L+ RKL    +   A+P YL     P +  
Sbjct: 128 DIALTDRVVDLLEDRTDVALR-SGPLKSSRLVARKLGQTRLMVVASPAYLARAGTPRTPA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN +TF  +  +    F   A   R          Q++   ++    V G G+A L
Sbjct: 187 DLARHNCLTFSYVRAENAWPF---AKRGRRTAFTPQGNTQISDGEALRAVAVAGLGLARL 243

Query: 245 PDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
            ++ V+ +     LV ++ED     +  ++  Y  +      +++AF +F+    +
Sbjct: 244 AEFQVRADLEAGRLVPVLEDYNPGETEDIHAVYVGQGAHLPARVRAFLDFLVAHVK 299


>gi|300698064|ref|YP_003748725.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074788|emb|CBJ54353.1| putative transcription regulator, LysR family; putative ttuA
           activator [Ralstonia solanacearum CFBP2957]
          Length = 309

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 133/292 (45%), Gaps = 6/292 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A +GS + AA  L ++  ++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 10  ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++     L ++  +PSG LR+  T+  G+  +   + E++  YPD+ +QL
Sbjct: 70  LERARRILGEIDDLDQLLTQAKGRPSGLLRVNATLGFGRMHIAPAISEYVRAYPDVDVQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  +R  +P   + +I RK+        A+P YL+    P +  EL
Sbjct: 130 QLSADPPPLNEDLFDVCVRFGEP-PDARIIARKVAPNRRLLCASPAYLQQHGVPQTPAEL 188

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +HN I    G          +      R         L  N     + + + G GI + 
Sbjct: 189 ARHNCIGIRQGSDAYGVWRLTSGKGAKARTETVHVRGNLTTNDGEIAVNWALEGHGIVMR 248

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++ ++   ++  LV+++    TP   +Y  Y +  + + +++ F +++  +
Sbjct: 249 AEWDIERYLNSGRLVQVLPHYATPEADIYAVYHQRHQLSSRIRLFVDYLAGR 300


>gi|296104327|ref|YP_003614473.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058786|gb|ADF63524.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 295

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  SGSFT AA +L +S   + + I+ LE+E+G +L  R+ R  +LT+
Sbjct: 1   MDKLRGMETFIAVVESGSFTGAASRLDMSSVMVGKYIALLESELGTRLLERNTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  ++   +  ++     P+G LR+      G  ++      FL  YP 
Sbjct: 61  AGRVYFDEAKRVLEQVAIAESAVERLRAAPAGTLRVTAPTSFGGCVIAPLTATFLQRYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L L N+ +D+  +  D AIR+   I++  L+ + L   +M   A+P YL     P 
Sbjct: 121 VRIELDLTNRMVDLVEEGVDLAIRIGD-IRNDDLVAKYLCPYNMVICASPDYLARHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  ++      +       L  V+  +   R + L+ N    +      G+G+
Sbjct: 180 TPADLVDHLCLSHTVWTARNEWR---LPGVEGEVRWKRDAILRCNDGYGLRMAARAGAGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L P+ +V +   +  LVR++E        V+  + + L+   KL  F   I L+ 
Sbjct: 237 LLQPEVLVAEELASGRLVRVLEPFTPAPRPVHLLWRQDLRPLPKLTEFIAHILLRL 292


>gi|167571846|ref|ZP_02364720.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 305

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 139/290 (47%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE G
Sbjct: 6   NLDDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++  T ++   ++    ++  +   P G LRI+++   G+++L   L  F   YP + 
Sbjct: 66  ERVYAWTEKILDDVDHLVEDVSTTRNVPRGTLRISSSFGFGRHVLAPALLNFNERYPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I    LI ++L T +    A+P YL     P  +
Sbjct: 126 VRLDLFDRLVDVAGEGFDLDIRIGDEIAD-HLIAKRLATNYRVLCASPAYLARYGTPRQL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +   +           L T            L  N     +Q+ + G GI L
Sbjct: 185 ADLAAHQCLAIKERDHPFGVWR--LTTRGETSSVKVGGALSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +       +  L R++ D I P+  V+  YP  L  + K++   +F+
Sbjct: 243 RSIWEAGPLLASGELKRVLPDAIQPA-NVWAVYPARLAASAKVRVCVDFL 291


>gi|193068517|ref|ZP_03049479.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|192958168|gb|EDV88609.1| transcriptional regulator, LysR family [Escherichia coli E110019]
          Length = 323

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALSAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|124266064|ref|YP_001020068.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124258839|gb|ABM93833.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 313

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 139/301 (46%), Gaps = 9/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F  V  +G+FT AA+ L L + +++R +  LE ++  KL  R  R +T+T 
Sbjct: 1   MDKFSAMQAFVRVVEAGNFTKAADSLQLPKPTVTRLVQMLEAQLQTKLLNRTTRRVTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  +  +   P G+LRI     +G  +L   L +F  LYPD
Sbjct: 61  DGAAYYDRAIRLLGDIDELESSMSHAKTSPRGRLRIDVGSSVGTLVLIPALPQFHALYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ +D+  +  DC +R    +   SL+ R++  +   A A+P YLK    P 
Sbjct: 121 IQIDLGVSDRPVDLLSENVDCVLR-GGELIDQSLVARRVGELQFLAAASPDYLKRHGMPR 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL+   H +I F          F++    +R     R   L VN   + +   + G 
Sbjct: 180 HPRELESGAHAVIGFFSARTGRQYPFDFHKDGERIEVAGR-YVLSVNDSNAYVAAGLAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-AR 295
           G+     ++++ +     L  ++ D  +    ++  YP     + KL+ F +++    AR
Sbjct: 239 GVVQAATFMLQTHISRGELEPVLADWCSEPVPIHVVYPPNRHLSAKLRVFVDWVAELFAR 298

Query: 296 D 296
           D
Sbjct: 299 D 299


>gi|167614649|ref|ZP_02383284.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 305

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 141/291 (48%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF  V R  SF+ AAEQL +S + +S++++ LE  +G +L +R  R + +TE G
Sbjct: 6   NLDDLRVFSAVVRLASFSAAAEQLAVSPAYVSKRVALLEKRLGTRLLHRSTRRVAVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G+++L   L +F   YP + 
Sbjct: 66  ERVFAWAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFSERYPQLD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I    LI ++L T +    A+P YL  C  P  +
Sbjct: 126 VRLDLFDRLVDVAGEGFDLDIRIGDEIAD-HLIAKRLATNYRVLCASPGYLARCGTPRQL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  +   +   +      W  TV       ++   L  N     +Q+ + G GI 
Sbjct: 185 ADLAAHQCLAIKE---RDHPFGVWRFTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   +       +  L R++ D + P+  V+  YP  L  + K++   +F+
Sbjct: 242 LRSIWEAGPLLASGKLERVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 291


>gi|323499170|ref|ZP_08104148.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315803|gb|EGA68836.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 299

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 126/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVEMGSFSKVAEINNLTNSVVSKRIARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V          +       SG ++++     G  +L   + EF   +P + + 
Sbjct: 64  LTHGAKNVKQATLEAMDAVSGFGENISGHIKMSVPTISGDLILADAVAEFCNTHPGLSVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNAKPVKPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN + +        E        +             ++  ++ +  + G GIA +P
Sbjct: 183 LTQHNCLQYAYQTTGASEWE--FKGKEGNYIVRVSGSFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV +  +++     +Y  YP   +   K+K     I  +
Sbjct: 241 RCLVYHDIRNGQLVDLFPELVGKRLGIYAVYPFTRQPPNKVKLLIEHIRAR 291


>gi|152977767|ref|YP_001343396.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150839490|gb|ABR73461.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 296

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF  V  +GSFT AA +L +S+  ISR ++ +E  +  +L  R  R ++LTE G + 
Sbjct: 6   AIQVFLAVTETGSFTQAAARLDISKPMISRYVNLMEDWLNARLLQRTTRKVSLTEAGEQA 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++ +  +  + EL   S +  G LR+  +   G   L   +  F++ +P + IQL
Sbjct: 66  VVFCRQIINLQQEMEQELAAQSGELRGGLRLTASNAFGSAHLVQAINAFMMCHPKLNIQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  I++  +  D A+R+       +L+ RKL   H    A P YL    EP +  +L
Sbjct: 126 LLSDTPINLVEERIDLAVRITNS-PDPNLVARKLAACHSVLAATPAYLAQAGEPATPDQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +   ++  K  +         R I     S    N  L+++       GIA+LP 
Sbjct: 185 ANHRYLAHANINRKSWK----FKQNGREIQIELTSRFATNDTLALLHAVQGHGGIAMLPR 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KARDW 297
           Y++ +   N  L  ++ D   P F +Y  YP   K    +++  +F+      +DW
Sbjct: 241 YLISEQLKNGTLKPVLTDWQLPEFDIYALYPSRHKLPLAVRSLIDFLAQWFAVKDW 296


>gi|307257242|ref|ZP_07539013.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864284|gb|EFM96196.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 297

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 133/302 (44%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+
Sbjct: 1   MDRITAIQVFLTVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       + +      +  G L+IA+    G   L   ++ FL  +P 
Sbjct: 61  AGEQTVEYCKKMTELTSAIEQDFLTKQGELRGSLKIASNAAFGGTHLLNAIRTFLAKHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL       
Sbjct: 121 LNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPTYLAQHGTIH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL  H+ +   ++  K            +       S L +N   +++ + +   GI
Sbjct: 180 SPQELANHSYLAHANVNRKEWT----FIKDGQETVLELTSQLTINDTGALLNFTLADGGI 235

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--- 295
           A+LP Y ++       L  ++ D   P++ VY  YP   +    +++F +F+  +     
Sbjct: 236 AMLPKYFIEQQLKNKQLQIVLPDWQMPTYQVYAVYPSRRQLPQTVRSFVDFLVEEFEGKG 295

Query: 296 DW 297
           DW
Sbjct: 296 DW 297


>gi|167569550|ref|ZP_02362424.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 307

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 141/300 (47%), Gaps = 12/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L  R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLNRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S+V PSG LR+     +G+ ++   L  FL  YP 
Sbjct: 61  DGTALYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPGFLDQYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L + ++ +++  +  DCA+R+   +  S LI R +  + +   A+P YL     P 
Sbjct: 121 ISIDLGVTDRTVNLIEERVDCALRVG-TLSDSGLIARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  +L +H  I +       +  + W+   TV+R   + R+    VNS  + +  C+ G 
Sbjct: 180 TPADLARHRPINYASPSSGRVAPWEWVEGDTVERLALQGRV---TVNSAEAYIACCLSGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKA 294
           G+  +P Y V  +     LV ++ D       +   YP     + +   F +++   LKA
Sbjct: 237 GLIQIPAYDVDTHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFHVFADWLETLLKA 296


>gi|190893177|ref|YP_001979719.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190698456|gb|ACE92541.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327190977|gb|EGE58031.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 303

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 136/294 (46%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +G+FT AA+ L + +++++  I GLE  +  KL  R  R + +T 
Sbjct: 1   MDQLSAMRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   +++  +LE     L  S   PSG+LR+  +      ++   L +F   YPD
Sbjct: 61  DGALYYERAAQLISELEELDGSLSNSQSLPSGRLRVEMSGAFADAIVVPALCDFYQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L + ++ +D  ++  DCA+R   P    SLI R++  + +   A+P Y++    P 
Sbjct: 121 IRLDLGVSDRTVDYLVENVDCALRAGTP-ADQSLIARRVSEMELITCASPSYIQKFGMPE 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L   H  + +          F +    +     PR     VN   + +   + G G
Sbjct: 180 RPEDLEAAHYSVNYFRAQNNRTLPFEFRRDNETIETNPRYIA-SVNDSRTYLTAALTGLG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +A +P ++ ++      LVR++ +       +Y  YP     + K++ F +++ 
Sbjct: 239 VAQVPTFMAREPMRRGELVRVLPEWRRDPIPLYVVYPPNRHLSNKVRVFVDWLV 292


>gi|146312778|ref|YP_001177852.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145319654|gb|ABP61801.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 298

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 136/297 (45%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  SGSFT AA +L +S   + + I+ LET++G +L  R+ R  +LT+
Sbjct: 1   MDKLRGMETFIAVVESGSFTGAASRLEMSAVMVGKYIALLETQLGTRLLERNTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  ++   +  ++     P+G LR++    LG  ++      FL L+PD
Sbjct: 61  AGRVYFDEAKRVLEQVSIAESAVERLRTAPAGTLRVSAPTSLGGCVIAPLTATFLQLWPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+ +D+  +  D AIR+ + + +  L+ + L    M   AAP YL     P 
Sbjct: 121 VRVELDLTNRRVDLVDEGIDLAIRIGE-VHNDDLVAKYLCPYRMVICAAPEYLARHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  ++      +       L  V+  +   R + L+ N    +    + G+G+
Sbjct: 180 TPADLVDHLCLSHTVWTARNEWR---LPGVEGEVRWKRDAILRCNDGYGLRMAAIAGAGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L P+ +V +      L+R++ED       V+  + + L+   KL  F   I   A+
Sbjct: 237 LLQPEVLVAEELAKGKLIRVLEDFTPEPRPVHLLWRQDLRPLPKLTHFIAHILAGAQ 293


>gi|237808400|ref|YP_002892840.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500661|gb|ACQ93254.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 303

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 134/296 (45%), Gaps = 9/296 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V   GSF  AA++L +S    S+ IS LE  +G++LF R  R L  TE G   + 
Sbjct: 8   RMFVAVMDVGSFASAAQRLGISSGQASKLISRLEQNLGVQLFKRSTRALAATEIGLAYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +    +++ +S  PSGK+RI+  +  G   L  +L  F   YP I++ +  
Sbjct: 68  RVKRLLDDYDALNDDIRNTSDSPSGKVRISAPVTFGSMQLATHLIAFAQRYPQIELDVSF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++  D  D A+R+ K +  SSLI RKL  I +   A+P YL     P    EL +
Sbjct: 128 SDRLVNVVDDGFDLALRIGK-LSDSSLIARKLCDIRVIHVASPGYLNERGMPAHWHELSQ 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  I   D   +    + +L         P    L+ ++    ++    G GIA LP ++
Sbjct: 187 HECIL--DTNFRDPFIWPFLDQNKVIDEYPVNGRLKFSNAEVCLKAACAGLGIARLPSFV 244

Query: 249 VKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA---RDWK 298
             D      +V ++ +   P   +Y  YP A     K +A  +F+        +W+
Sbjct: 245 AADALRAKEVVPVLTNCELPILGLYALYPPAKHLARKSRAVIDFLVTALSGEPEWE 300


>gi|226199393|ref|ZP_03794951.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225928469|gb|EEH24498.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 415

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 92  MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 151

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 152 EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 211

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 212 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 270

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 271 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 328

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 329 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 383


>gi|170732722|ref|YP_001764669.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169815964|gb|ACA90547.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 310

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 135/292 (46%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA+ L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 9   DLEAWAIFARVAETGSFAKAADLLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G + L   L  FL  YP + 
Sbjct: 69  ELLRDRAIRLLADAELIENEASAQALEPHGLVRVNAPMSFGLHHLSPVLPAFLERYPRVD 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  S+L  R+L  +     A+P YL     P   
Sbjct: 129 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSTLRSRRLCAVRRPLVASPAYLDRRGRPTHP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L++H  +T+ +L       F   A+ D  +G      ++ N+   I+   V G G+AL
Sbjct: 188 RDLEQHVCLTYTNLPTPEYWRFRHPASGD-EVGVSVHGRIRTNNADVILPALVGGHGLAL 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            P+++V D      L  +M D       V    P  +    ++    +F+  
Sbjct: 247 QPEFLVWDELQRGALEEVMSDWKIADINVNLVTPPGMLRAARVTVLLDFLAE 298


>gi|157163000|ref|YP_001460318.1| LysR family transcriptional regulator [Escherichia coli HS]
 gi|312972208|ref|ZP_07786382.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Escherichia coli 1827-70]
 gi|157068680|gb|ABV07935.1| transcriptional regulator, LysR family [Escherichia coli HS]
 gi|310334585|gb|EFQ00790.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Escherichia coli 1827-70]
          Length = 299

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + +NLL   L EFL  +P 
Sbjct: 61  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   N+ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHNRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 297


>gi|170728259|ref|YP_001762285.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813606|gb|ACA88190.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 298

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 154/298 (51%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +++F   +RSGSFT AA++L+L+QS++S++I+ LE ++G  LF+R++R + LT 
Sbjct: 1   MDKYESMQLFIHTSRSGSFTAAADELNLTQSAVSKKIAWLEKKLGFTLFHRNSRKIQLTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG        +   ++   + +L+       G+LR++    +   +L   + +F+ ++P 
Sbjct: 61  QGKNYLSYCKQALDEMTYIESQLKGELNAVIGELRLSVPSAMATQILAKPISDFMAIHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + ++++ +D+     D AIR+   +  S    R L       +A+P YLK+   P 
Sbjct: 121 LTVNISVNDRQVDLIESKVDIAIRVA-TLPDSGYKARFLFNNQSIMFASPSYLKDKGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +EL  H  + +    P  +  ++   + +  +       ++ +S   +++  ++G GI
Sbjct: 180 TAEELTTHQCLVYSLKAPSNI--WSLTDSNNTTVKVKVKERVKSDSAEMLLKMSLMGHGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + LP+++VK   DN  L  I+ D  + S  +Y  +        +++AF NF+    +D
Sbjct: 238 SALPNWMVKQHIDNGRLTAILVDYQSMSLPMYAVFKADGYQPYRIQAFVNFLAEYFQD 295


>gi|241205186|ref|YP_002976282.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859076|gb|ACS56743.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 299

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M  D  +++L  F  VAR  SFT AA +L +SQS++S+ + GLE ++G++L  R  R ++
Sbjct: 1   MPLDNNFNELVAFLTVARERSFTRAAAKLGVSQSALSQTVRGLEEKLGLRLLTRTTRSVS 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            T+ G +L       + +++     L E   +P+G +RI        ++L   L  FL  
Sbjct: 61  PTQAGERLLERVGPRFEEIQFEIAALSEMRERPAGTIRITAGEHPAISVLAPALARFLPD 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +PDI +++I+D    DI  +  D  IRL + +    +  R    I M    AP Y ++  
Sbjct: 121 HPDINVEVIVDYGLTDIVAERYDAGIRLGEHLAKDMIAVRIGPEICMAVVGAPSYFEHHP 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVL 237
            P   Q+L  HN I     +P     + W    D      R+    V N+    +   + 
Sbjct: 181 RPDIPQDLTAHNCINM--RLPTHGTIYPWEFEKDGRELRVRVEGQTVFNNIAMRIGAVLD 238

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+A +P+  V+   ++  L+RI+ED   P    +  YP     +     F + +
Sbjct: 239 GLGLAYMPEDQVQSYIEDGRLIRILEDWCQPFPGYHLYYPNRRHASPAFTLFVDAL 294


>gi|126442213|ref|YP_001057833.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126221706|gb|ABN85212.1| transcriptional regulator [Burkholderia pseudomallei 668]
          Length = 435

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 112 MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 171

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 172 EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 231

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 232 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 290

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 291 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 348

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 349 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 403


>gi|330809257|ref|YP_004353719.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377365|gb|AEA68715.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 307

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +   G F  AA+ L L ++++S  I  LE  +G++L  R  R +  T 
Sbjct: 1   MDRLQAMQVFRRIVELGGFGKAADDLGLPRATVSLLIQQLEAHLGVQLLQRTTRQVRATL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++ + ++   L+  +  L     +P G L++   I  G   +   L +F   YP 
Sbjct: 61  DGQAYYQRSGQLLDDLDDLESSLSAQRSQPRGTLKVDMPIAFGCTWIVPRLPDFYRRYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ +   ++ + +  +  DCAIR    I   +L+ R +V +H    A+P YL     P 
Sbjct: 121 LQLDIGFHDRQVHLQREGVDCAIRAGN-IVDQALVARPIVRLHQLTCASPDYLARAGTPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L  H  I F     +       +A   R +  P  S L VN+  + +  C  G G+
Sbjct: 180 RLEDLAAHRAIGFASGNGRFFPFEFEVAGRVREMQLP--SDLNVNNADAYVTACEAGFGL 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V+       LV++++D   PS+ +   YP   + + +++ F +++  
Sbjct: 238 IQVPRYHVQQQLAEGRLVQVLDDYSVPSWPISAVYPPHRQLSPRVRVFIDWVIE 291


>gi|119382985|ref|YP_914041.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119372752|gb|ABL68345.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 300

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 140/297 (47%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +  L  F   A + SFT A  +L +S S++ + ++ LE E+G++LF+R  R +TLT
Sbjct: 1   MN-SFGTLAAFVHSAETRSFTEAGRRLGISSSAVGKTVARLEEELGVRLFHRSTRAITLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +       ++ + +  + EL +++ KP GKLR+          L  +L  F   +P
Sbjct: 60  AEGCRFLDRCYRIFAEFDDAKRELTQAAGKPQGKLRVGLPQ--IGIHLMPHLIAFQRTFP 117

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L   ++ +++  +  D  +R+ + +  S L  R+L   H    AAP YL +   P
Sbjct: 118 EIELELDFSDRLVNLVEEGFDAVMRIGE-LNDSRLTMRRLDGYHHRLVAAPAYLAHRGTP 176

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  + +       +  +        P  +P  S +  NS  S+++    G G
Sbjct: 177 DRPAELMDHACLRYRYPTTGKLAPWPLNGRGGAPSIDPPQSSV-TNSIDSLLEMVQAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IALLPD+IV D      L  +++            +P +     K+KAF +F+  + 
Sbjct: 236 IALLPDFIVADAVAAGRLTVVLDRHGQDRRDFCILWPSSRHTAPKIKAFVDFMVSRL 292


>gi|313202390|ref|YP_004041048.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441706|gb|ADQ85812.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 300

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 146/300 (48%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++VF  VA   SFT AA+ L L + SIS  ++ LE  +G +L +R  R + LT+
Sbjct: 1   MDKLDAMQVFVRVAELASFTRAADSLGLPKGSISNAVTQLEARLGARLLHRTTRKVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +    ++  +++  +   Q++     G+LR+   +++  NL+   L EF+  +P 
Sbjct: 61  DGQRFYERCKDLLAEVDEVESLFQQTETLLRGRLRVDMPLNMAHNLVIPQLPEFMQRHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+L   ++ +D   +  DC +R+   +  S L+ R L T+ M   A+P Y++    P+
Sbjct: 121 IEIELSSTDRRVDPISEGFDCVVRVG-VLTESGLVARHLGTLEMVNCASPAYIRQYGMPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++++L  H ++ +  ++      F ++ A V R    P  + + VN+  +    C+ G G
Sbjct: 180 ALEDLAAHYMVHYVSVLGAKPSAFEYMEAGVSRHCLVP--ARVTVNNSTAYSMACLAGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  +P   V+       L+ ++ +       V   YP     + +L AF  ++  K   +
Sbjct: 238 IIQVPLVAVRTYLQRGELLELLPEFKPEPMPVSLLYPHRRHLSRRLLAFMEWLTQKVHAY 297


>gi|309779384|ref|ZP_07674146.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308921942|gb|EFP67577.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 307

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 132/292 (45%), Gaps = 6/292 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A +GS + AA  L ++  ++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 10  ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++     L ++  +PSG LR+  T+  G+  +   + E++  YPD+ +QL
Sbjct: 70  LERARRILGEIDDLDQLLTQAKGRPSGLLRVNATLGFGRMHIAPAISEYVKAYPDVDVQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  +R  +P   + ++ RK+ +      A+P YL+    P +  EL
Sbjct: 130 QLSADPPPLNEDLFDVCVRFGEP-PDARIVARKVASNRRLLCASPAYLRERGTPATPAEL 188

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +HN I    G          +      R         L  N     + + + G GI + 
Sbjct: 189 ARHNCIGIRQGSDAYGVWRLASGKGAKRRTETVHVRGNLTTNDGEIAVNWALEGHGIVMR 248

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + ++    +  LV+++    TP   VY  Y +  + + +++ F +F+  +
Sbjct: 249 AQWDIERYLKSGRLVQVLPQYATPEADVYAVYHQRHQLSSRIRLFVDFLMGR 300


>gi|242314165|ref|ZP_04813181.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|242137404|gb|EES23806.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 417

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 94  MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 153

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 154 EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 213

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 214 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 272

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 273 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 330

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 331 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 385


>gi|134279870|ref|ZP_01766582.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|134249070|gb|EBA49152.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 441

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 118 MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 177

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 178 EGAAYYEHCIKIITEITETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 237

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 238 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 296

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 297 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 354

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 355 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 409


>gi|126455277|ref|YP_001065075.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|126228919|gb|ABN92459.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
          Length = 415

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 92  MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 151

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 152 EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 211

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 212 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 270

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 271 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 328

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 329 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 383


>gi|206563637|ref|YP_002234400.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039677|emb|CAR55646.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 303

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 131/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AAEQL L + ++S  +  LE  + I+L  R  R + LT 
Sbjct: 1   MDHLQAMRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   L+  +   +++   P G +R+        N +   L +F   YPD
Sbjct: 61  EGATYYERCVRLLADLDDAETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P 
Sbjct: 121 LRVAISTTDRFVDLVADGIDCAVRVGA-LSDTSLVARRVGEMAQINCASPAYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S  +L  H  + +         D+ +       +   ++ S + VNS  + +  C+ G G
Sbjct: 180 SPDDLPDHVAVGYFSSRTGRELDWEYADMDSGEMHTVKMHSVVSVNSSQAYLACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P   +     + +LV ++ +       V   +P       +++ F +++  
Sbjct: 240 LIQAPRDGLAPLLADGSLVEVLPEWRAGPLPVSVVFPTGRHLAPRVRIFVDWLAE 294


>gi|70732518|ref|YP_262281.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346817|gb|AAY94423.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 294

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 142/291 (48%), Gaps = 5/291 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+   VA + SFT AA  L L+QS +SR IS LE ++G++L  R+ R ++LT  
Sbjct: 1   MDLNALRLLVRVAETRSFTRAAGDLGLTQSGLSRAISRLEQQLGVRLLQRNTRSVSLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    + +  +L   +  L +    PSG L+I+T    G+ ++   + E    +P +
Sbjct: 61  GQVLVERAAPLLAELAHAEHLLLDRRESPSGMLKISTPSLFGRKVVMPVIGELTAQHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+ ++ ++ +DI  +  D  +R    IQ   LI R L  +     AAP YL+    P  
Sbjct: 121 SIEAVMTDRVVDIIDEGFDAVVRTG-VIQDQRLIARPLAPLRWVTVAAPGYLERHGTPRH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +HN +   +L    + D+ ++    +P+       L  +   +++   + G GIA
Sbjct: 180 LADLQQHNCLAVRNLRSGRLVDWQFMDQ-GKPLDLAVQGRLIFDIGDALVDAVLGGFGIA 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L ++ V+   D   LV ++++    S  +   YP + + + KL AF   +
Sbjct: 239 QLMEFAVREALDTGRLVPVLQEHAGRSRELSLVYPPSRQCSPKLTAFAEAL 289


>gi|218891710|ref|YP_002440577.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235326|ref|ZP_04928649.1| hypothetical protein PACG_01226 [Pseudomonas aeruginosa C3719]
 gi|254240756|ref|ZP_04934078.1| hypothetical protein PA2G_01422 [Pseudomonas aeruginosa 2192]
 gi|126167257|gb|EAZ52768.1| hypothetical protein PACG_01226 [Pseudomonas aeruginosa C3719]
 gi|126194134|gb|EAZ58197.1| hypothetical protein PA2G_01422 [Pseudomonas aeruginosa 2192]
 gi|218771936|emb|CAW27715.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 297

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR++    L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRVSLP--LVSGLVLPTLADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPV-DSRLSMRELGEFQLKLVGSPAYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E++  L   D          +  N+  + + + +   GIA LPD+ +
Sbjct: 186 TCLHYRFPNTGRLEEWP-LRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPDFSI 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++      LV +++         +  +P   + + KL+AF +F+  + 
Sbjct: 245 REALREGRLVSVLDTFCERRARFFLLWPSGRQVSPKLRAFIDFVAPRV 292


>gi|325121849|gb|ADY81372.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 311

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 131/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++  F  V  S SF+  A QL  + S++SR ++ LE  +G +L YR  R L L+E G 
Sbjct: 10  LNEMATFVKVVESESFSETARQLGTTPSAVSRAVARLERALGTRLLYRTTRKLRLSESGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++++   ++ +  +       +  V+P G +R++    +G  ++  +L EFL  YP I I
Sbjct: 70  QVYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEFLERYPKIDI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++L+++ +D+  D  D A+R+ +      L+ RKL+ I     A P YL     P    
Sbjct: 130 QMLLEDRYVDLIDDGVDLALRITEQ-PPGGLMGRKLIDIDHLVCATPEYLAKHGIPNHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I  G+        F      ++ I          N     +   +   GIA L
Sbjct: 189 DLKQHECIYLGEQASDSKWKFQ---QGNKSISVAVRGRYAANHTGVRLSAALQHLGIASL 245

Query: 245 PDYI---VKDNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++         LV+++ D    ++    ++  YP       KL     ++  K 
Sbjct: 246 PYFVACHALQQGTLVQVLPDWYFKTYYSGGLWLLYPPTRHVPPKLSVLIQYLADKL 301


>gi|157377100|ref|YP_001475700.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319474|gb|ABV38572.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 303

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 144/289 (49%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA ++ + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++  + +  ++E  +  ++ +    SG LRIA  +   Q ++      F+ LYP+++
Sbjct: 63  ALFYQHCTSISDEIEAAKATIENTHNDVSGSLRIAIPVSFSQEIIANLCSSFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + ++ +  +  D AI+   P+QSS L+ R L        A+P YLKN   P + 
Sbjct: 123 LDVQFTDSEVGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPGYLKNNGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H+ I  G      +      A       + ++   +VNS + + Q      GIA+
Sbjct: 182 QDLMNHSGILLGTSRSAPIWPLGKGARKTMVNFKRKV---RVNSAVMVKQLVQDDFGIAM 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L + + K+   +  LV I+++    +F VY  Y    +    +  F +F
Sbjct: 239 LSNSVCKNELASGALVPILQEWPIEAFKVYGVYSSRRQLATNISVFLDF 287


>gi|323497510|ref|ZP_08102528.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323317593|gb|EGA70586.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 292

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L VF  V   GSFT AAE  +  +S++SR+I+ LET +G++L  R  R L LTE G
Sbjct: 5   DLNDLMVFATVVEKGSFTAAAEAYNTPKSNVSRKITRLETHLGVRLLERSTRSLRLTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +  +L      ++    KP G+LRI T++ +GQ+LL  +L  F L +PDI+
Sbjct: 65  QRYYEYCRRIKDELNAADSAVESMLEKPQGRLRICTSLGVGQSLLSEHLANFCLQHPDIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ +D+  +  D A R+   +  SSL+ ++L  I++  YAAP   +        
Sbjct: 125 LDLALTNRRVDLIEEGFDLAFRMGD-LADSSLVAKRLCEINLKLYAAPD--RGFEALSHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L    L+               L +            ++ + +  + +  V G GI  
Sbjct: 182 SNLLDQPLMLMSAKERSADWQ---LTSKHEEYHVSFKPSVRCDDFSMLKRMAVQGLGITE 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPDY+ K+   N  L+ ++ D       +Y  YP     T K+++   ++
Sbjct: 239 LPDYMAKEFEINGKLINVLPDWSFKPVALYALYPSHRGATPKVRSLLEYL 288


>gi|307825003|ref|ZP_07655225.1| transcriptional regulator, LysR family [Methylobacter tundripaludum
           SV96]
 gi|307734050|gb|EFO04905.1| transcriptional regulator, LysR family [Methylobacter tundripaludum
           SV96]
          Length = 304

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 12/299 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  VA++GSF   A  L +S++  ++ I  LE  +G +LF R  R L+LT+
Sbjct: 1   MDKLTSMNVFVRVAKAGSFAGGARDLDISRAMATKHIMHLEGVLGTRLFNRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+       +V  ++E  +  +     +P G LRI+    +G   +   + EFL ++ D
Sbjct: 61  VGASYLERCQQVLLEVEEMEAAVTHLQTEPRGVLRISAPPVIGSTHIAHAVSEFLKIHSD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++I+ +   D+  +  D AI L   +  +S+  RKL +  +    +P Y +    P 
Sbjct: 121 LTIEMIIQSSPGDLIDEGIDVAIFLGA-LDDTSMFARKLASSSLVVCGSPDYFEQYGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L+ H+ +    + P+    F   A      G      +Q N    I    + G G+
Sbjct: 180 TPEDLENHSCLVNWAIAPRNKWLFKGEAGY---TGINVSGRMQANVADPIRIAAISGLGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            +LP YIV  +     L  ++ED  +P   V+  YP     + K+++F +F+    ++W
Sbjct: 237 VMLPTYIVGRDIEKGRLKVVLEDYTSPPLDVHAVYPHRKYLSAKVRSFMDFL----QEW 291


>gi|330897918|gb|EGH29337.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 298

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + VF +VA + SFT A ++L +S S I + I  LE  +G++LF+R  R + LT +G
Sbjct: 3   SLGSIAVFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +LE  ++EL  +   P G+LRI+    L   L+   + +F+  YPDI+
Sbjct: 63  SIFLERCRRILSELEAAEMELSNARDLPKGRLRISLP--LVSGLVMPVIIDFMRTYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P   
Sbjct: 121 LDIDFSDRMVDIIEEGFDIVLRTGDPG-DSGLMSKRMGSFQLRIVGAPDYFARHGTPRHP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +          E +           E     +  N+   ++     G GIA 
Sbjct: 180 GDLSQHACLLHKFPSTGRFEHWPLRREAGVDDLE-LPQAMVCNTTEILVDVARAGLGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD+++     N  L+ +++D    + T    +P +   + +L+ F +F+  
Sbjct: 239 LPDFMILSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFMHA 290


>gi|160897007|ref|YP_001562589.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362591|gb|ABX34204.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 307

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 138/292 (47%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA  L +SQ +IS+ I+ LET +   LF+R +R ++LT  G
Sbjct: 6   DLEAWAIFAKVAETGSFAKAAADLGVSQPTISKAITRLETRLKTSLFHRTSRRMSLTASG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  + E+ E S    G +RIA  +  G + L   +  F+  +P++ 
Sbjct: 66  QASLERAARILAEGEAVEAEISEQSKSLRGPIRIAAPMSFGISHLAPAVPAFMAEHPEVT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ ID+     D A+R+   +  SSL+ R+L T+ +    +P Y +    P   
Sbjct: 126 LDLHFSDELIDVVAQGFDIALRISS-LPDSSLLARRLCTVRLLLVGSPEYFERHGRPSHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H  + +  +  +  E + ++        +   + ++VN+   +      G G+AL
Sbjct: 185 RELAQHRALRY--VHSRLGEAWRFVHARRGEFAQVVPTAMRVNNAEGLAPALRAGLGLAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            P+++  ++     L   M+D   PS  ++   P       +++A  +F+  
Sbjct: 243 QPEFLAWEDLQSGALQTCMDDWQVPSIALHIVTPPGRARPARVQALIDFLAA 294


>gi|317406095|gb|EFV86358.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 312

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 143/297 (48%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AA+ LH+S++S+++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  ++  P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAVYYERVLRLLADMDDAETSLSSAAAVPRGRLRVDVPSPLARMILVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +D+  +  DC +R    +   SL+ R++  + +  YAAP YL+    P 
Sbjct: 121 IQLDMGVSDRIVDVIGENVDCVVR-GGELTDQSLMARRVGDLQLRVYAAPAYLQRAGAPG 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             ++L    H ++ F  L  +  +   + +   D  I       + V+   + +   + G
Sbjct: 180 HPRDLEDSHHRIVGF--LWSRSGKPLPYAMHRGDESIHAHGRYVVAVDDGNAYLAAGLAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  LPDY+ +D+     LV + ED    S  +Y  +P     + KL+ F +++  
Sbjct: 238 MGILWLPDYMARDHAARGELVPVFEDWRLDSMPLYIAFPPNRHVSAKLRVFIDWVAE 294


>gi|170725685|ref|YP_001759711.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169811032|gb|ACA85616.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 313

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 138/291 (47%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSAAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    +     +   +    G L++  +   G   +   L EF+  +P++++
Sbjct: 65  LLYTQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMTTHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y++   +P   +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLVASPDYIEKHGQPDRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    V G G+  
Sbjct: 184 QLVDHNCLVY---QGEWHEHSVWQFKQGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV ++ED  +T    +   YP       K+ AF +FI
Sbjct: 241 LASYLLEDEIAKGTLVPLLEDWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|17989480|ref|NP_542113.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. 16M]
 gi|62317056|ref|YP_222909.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269049|ref|YP_418340.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus
           2308]
 gi|163844296|ref|YP_001621951.1| hypothetical protein BSUIS_B0103 [Brucella suis ATCC 23445]
 gi|189022321|ref|YP_001932062.1| LysR substrate binding domain protein [Brucella abortus S19]
 gi|225628575|ref|ZP_03786609.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225685962|ref|YP_002733934.1| LysR family transcriptional regulator [Brucella melitensis ATCC
           23457]
 gi|237816617|ref|ZP_04595609.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|254691460|ref|ZP_05154714.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 6 str. 870]
 gi|254695243|ref|ZP_05157071.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|254698343|ref|ZP_05160171.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254699411|ref|ZP_05161239.1| transcriptional regulator, LysR family protein [Brucella suis bv. 5
           str. 513]
 gi|254702530|ref|ZP_05164358.1| transcriptional regulator, LysR family protein [Brucella suis bv. 3
           str. 686]
 gi|254706344|ref|ZP_05168172.1| transcriptional regulator, LysR family protein [Brucella
           pinnipedialis M163/99/10]
 gi|254711366|ref|ZP_05173177.1| transcriptional regulator, LysR family protein [Brucella
           pinnipedialis B2/94]
 gi|254711965|ref|ZP_05173776.1| transcriptional regulator, LysR family protein [Brucella ceti
           M644/93/1]
 gi|254715035|ref|ZP_05176846.1| transcriptional regulator, LysR family protein [Brucella ceti
           M13/05/1]
 gi|254731786|ref|ZP_05190364.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 4 str. 292]
 gi|256014890|ref|YP_003104899.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|256030004|ref|ZP_05443618.1| transcriptional regulator, LysR family protein [Brucella
           pinnipedialis M292/94/1]
 gi|256043021|ref|ZP_05445967.1| transcriptional regulator, LysR family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256158173|ref|ZP_05456085.1| transcriptional regulator, LysR family protein [Brucella ceti
           M490/95/1]
 gi|256252881|ref|ZP_05458417.1| transcriptional regulator, LysR family protein [Brucella ceti
           B1/94]
 gi|256256645|ref|ZP_05462181.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 9 str. C68]
 gi|256262913|ref|ZP_05465445.1| LysR substrate binding domain-containing protein [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260166945|ref|ZP_05753756.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99]
 gi|260544292|ref|ZP_05820113.1| LysR substrate binding domain-containing protein [Brucella abortus
           NCTC 8038]
 gi|260564255|ref|ZP_05834740.1| LysR substrate binding domain-containing protein [Brucella
           melitensis bv. 1 str. 16M]
 gi|260757079|ref|ZP_05869427.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260759551|ref|ZP_05871899.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260762796|ref|ZP_05875128.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882889|ref|ZP_05894503.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|261215606|ref|ZP_05929887.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261216739|ref|ZP_05931020.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261219969|ref|ZP_05934250.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261313789|ref|ZP_05952986.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261318971|ref|ZP_05958168.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261319606|ref|ZP_05958803.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261749861|ref|ZP_05993570.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261753104|ref|ZP_05996813.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|261756330|ref|ZP_06000039.1| LysR substrate binding domain-containing protein [Brucella sp.
           F5/99]
 gi|265987025|ref|ZP_06099582.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265989460|ref|ZP_06102017.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|265996687|ref|ZP_06109244.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|297250000|ref|ZP_06933701.1| hypothetical protein BAYG_02778 [Brucella abortus bv. 5 str. B3196]
 gi|17985362|gb|AAL54377.1| transcriptional regulatory protein, lysr family [Brucella
           melitensis bv. 1 str. 16M]
 gi|62197249|gb|AAX75548.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82939323|emb|CAJ12262.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Brucella melitensis biovar Abortus 2308]
 gi|163675019|gb|ABY39129.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020895|gb|ACD73616.1| LysR substrate binding domain protein [Brucella abortus S19]
 gi|225616421|gb|EEH13469.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225642067|gb|ACO01980.1| transcriptional regulator, LysR family protein [Brucella melitensis
           ATCC 23457]
 gi|237787430|gb|EEP61646.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|255997550|gb|ACU49237.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260097563|gb|EEW81437.1| LysR substrate binding domain-containing protein [Brucella abortus
           NCTC 8038]
 gi|260151898|gb|EEW86991.1| LysR substrate binding domain-containing protein [Brucella
           melitensis bv. 1 str. 16M]
 gi|260669869|gb|EEX56809.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260673217|gb|EEX60038.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260677187|gb|EEX64008.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260872417|gb|EEX79486.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|260917213|gb|EEX84074.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|260918553|gb|EEX85206.1| transcriptional regulator [Brucella ceti B1/94]
 gi|260921828|gb|EEX88396.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292296|gb|EEX95792.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261298194|gb|EEY01691.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261302815|gb|EEY06312.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261736314|gb|EEY24310.1| LysR substrate binding domain-containing protein [Brucella sp.
           F5/99]
 gi|261739614|gb|EEY27540.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261742857|gb|EEY30783.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|262550984|gb|EEZ07145.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|263000129|gb|EEZ12819.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092751|gb|EEZ16960.1| LysR substrate binding domain-containing protein [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264659222|gb|EEZ29483.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|297173869|gb|EFH33233.1| hypothetical protein BAYG_02778 [Brucella abortus bv. 5 str. B3196]
 gi|326410283|gb|ADZ67347.1| LysR substrate binding domain protein [Brucella melitensis M28]
 gi|326553576|gb|ADZ88215.1| LysR substrate binding domain protein [Brucella melitensis M5-90]
          Length = 297

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE
Sbjct: 1   MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+
Sbjct: 61  AGHTYYHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P 
Sbjct: 121 IVLDVRLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L     I   D   +   ++++       +  P    +++NS ++     + G G 
Sbjct: 180 RPEDLTDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGF 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP +I +D      L+  +++ I     +Y  YP       K++A  +F+
Sbjct: 238 CMLPAFIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289


>gi|85717275|ref|ZP_01048230.1| transcriptional regulator, LysR family protein [Nitrobacter sp.
           Nb-311A]
 gi|85695916|gb|EAQ33819.1| transcriptional regulator, LysR family protein [Nitrobacter sp.
           Nb-311A]
          Length = 329

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 131/297 (44%), Gaps = 9/297 (3%)

Query: 5   WDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+L   R+F  V  +GSFT AAE+L  S    S+ +S LE E+G++L  R  R ++ TE
Sbjct: 27  LDRLEPERMFVAVMETGSFTAAAERLGTSSGQASKLVSRLENELGVRLLSRTTRAVSPTE 86

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +     +++ S  P G+LR+   +  G   +   L EF   +P+
Sbjct: 87  AGHAYFDRLRPLLEEFDNLDAAVRDKSGAPRGRLRLTVPLTFGTTEIAPGLNEFASKFPE 146

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +++  +  D AIR+ +    SS+I RKL  + +    +  YLK   EP 
Sbjct: 147 IELDVSFSDRMVNLVDEGFDMAIRVGRA-DDSSMIARKLCDVRIVIVGSQTYLKRRGEPK 205

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L   + I   D   +    +        PI       L+ ++  + +     G G+
Sbjct: 206 RPNDLAHFDCII--DTNFREPNRWPLRNARGTPIDVAVGGRLRYSNAEACLNAAEAGLGL 263

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A +P +I           R+++   T  + V+  YP       K++   +F+  + R
Sbjct: 264 ACVPSFIAGKALRAGRTRRVLQAFETEPYAVHALYPHGRHLATKVRVLVDFLVERYR 320


>gi|295676622|ref|YP_003605146.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436465|gb|ADG15635.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 317

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 134/302 (44%), Gaps = 9/302 (2%)

Query: 1   MSFDWDKL-----RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L      +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R
Sbjct: 1   MQRKFDDLLLGSIELFCLAAELGSFTLAANAASVTPAAVSRSVARLEERLGVRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G +      +   +L   + E+      P+G LRI+     G   +   L  F
Sbjct: 61  QIRLTDAGRRYFEQCRQALSQLMDAEREVTGEQTTPAGVLRISMPTPYGHYRVLPLLPAF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP ++++  L N++ID + +  D AIR R P   S+L+ RKL    M   A P YLK
Sbjct: 121 RKRYPQVRVETHLSNRNIDFADEGFDLAIRGRAP-ADSNLVARKLEDAEMVVVATPAYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P +I++L  H  I F          + +  + +      R S       L+ +   
Sbjct: 180 RAGVPKTIEDLQAHECIQFEMPSSGRHLAWTFEGSPENADVLTRGSYGTSGDALAGVTLA 239

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G+G+     ++V D+     LV ++ +    +      YP A   T +++AF  F+  
Sbjct: 240 RAGAGLFQTYRFVVADDLREGRLVEVLREAGGRTRPFILLYPHARYLTSRVRAFVEFLIE 299

Query: 293 KA 294
           + 
Sbjct: 300 QL 301


>gi|218509705|ref|ZP_03507583.1| transcriptional regulator, LysR family protein [Rhizobium etli
           Brasil 5]
          Length = 305

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA   SF  AA+ L +S  ++SR +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEGLAMFAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +Y + E  +   +E + +P G +R+A  +D G   L   L +F  L+P+I 
Sbjct: 66  LRLVDSAARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEIS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +  +DI  D  D A+R+   +  SSL+ R+L  +     AAP YL     P   
Sbjct: 126 IDLHMSDAVVDIVGDGFDAALRIA-VLPDSSLVARRLTPVDRFILAAPAYLDRHGVPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H+ + +     + +  +       +         L+  +  +++   + G GI  
Sbjct: 185 RELMAHHCLGYAYRARQDV--WRLRNGEGKEEVIVPSGSLRATNSQALVPMALRGLGIIE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP+++  D   +  L  I+ D   P+  +YF  P A     K++   +F+  + 
Sbjct: 243 LPEFLAHDYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLSDFMMARL 296


>gi|320199700|gb|EFW74290.1| LysR family transcriptional regulator YhjC [Escherichia coli
           EC4100B]
          Length = 323

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|254795474|ref|YP_003080311.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|254594874|gb|ACT74235.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
          Length = 299

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL  +L EFL  +P 
Sbjct: 61  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPHLSEFLYQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 NPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 297


>gi|161620186|ref|YP_001594072.1| LysR family transcriptional regulator [Brucella canis ATCC 23365]
 gi|161336997|gb|ABX63301.1| transcriptional regulator, LysR family [Brucella canis ATCC 23365]
          Length = 297

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE
Sbjct: 1   MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+
Sbjct: 61  AGHTYYHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P 
Sbjct: 121 IVLDVRLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L     I   D   +   ++++       +  P    +++NS ++     + G G 
Sbjct: 180 RPEDLTDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGF 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP +I +D      L+  +++ I     +Y  YP       K++A  +F+
Sbjct: 238 CMLPAFIAEDEIEQGRLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289


>gi|311695639|gb|ADP98512.1| transcriptional regulator, LysR family protein [marine bacterium
           HP15]
          Length = 298

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 138/288 (47%), Gaps = 11/288 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D    + +F  VA  GSFT AA+ L ++ +++S+ I+ LE ++  +L  R  R + L
Sbjct: 1   MATDKLVAMNIFRRVAELGSFTRAADDLEITAATVSKHIAFLERDLDTRLINRTTRRMNL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G    + T  +  +LE  ++E +    +P G +R+   +  G   +   +  FL  +
Sbjct: 61  TDAGFAFLKRTQALLDELEDAELEARGFQAEPKGTIRLNVPMSFGLTHISEAIDSFLNRF 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I I L L ++ +D+     D AIR+R  +  SSL+ R L        A+P YLK+  E
Sbjct: 121 PEIDIDLQLSDRMVDLVEQGVDIAIRVRSSLADSSLMARPLRKSRNIVCASPEYLKDVPE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +  +L  HN +TF       +                     + +S L+I Q  + G+
Sbjct: 181 VHAPSDLAGHNCLTFTLHDRPRVWKL-------GDQEVMVSGNFRTDSSLAIRQSLLSGA 233

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           GI  LP ++V+++    +L+ ++ D     +TV+  +P   K   K++
Sbjct: 234 GIGYLPRFLVQEDIESGSLIPLLPDYPPEPYTVFALFPPGRKQPTKVR 281


>gi|167838477|ref|ZP_02465336.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 305

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 144/291 (49%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE G
Sbjct: 6   NLDDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++  T ++   ++    ++  +   P G LRI+++   G+++L   L +F   YP + 
Sbjct: 66  ERVYAWTEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFNERYPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I    LI ++L T +    A+P YL     P  +
Sbjct: 126 VRLDLFDRLVDVAGEGFDLDIRIGDEIAD-HLIAKRLATNYRVLCASPGYLARHGTPRQL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  +   +   +      W  TV       ++   L  N     +Q+ + G GI 
Sbjct: 185 ADLAAHQCLAIKE---RDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   +       +  L R++ D + P+  V+  YP  L  + K++   +F+
Sbjct: 242 LRSIWEAGPLLASGKLKRVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 291


>gi|311103662|ref|YP_003976515.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758351|gb|ADP13800.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           13 [Achromobacter xylosoxidans A8]
          Length = 334

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 135/290 (46%), Gaps = 7/290 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  G+F  A ++L + +S++SR +  LE ++G +LF R  R  +LT +G + +  
Sbjct: 33  AFMAVAVEGNFAKAGDRLGIGRSAVSRSVQKLEDQLGTRLFVRTTRSTSLTPEGQRFYEQ 92

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                 ++     +++E     PSG +R+ +T+  G+ ++   L +F    P+I ++L+L
Sbjct: 93  CHPGVERIIQALDDMRELREGPPSGLVRVCSTVGFGRKVVAPLLNDFRKANPNISVELLL 152

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D+   D + D  D + R  + ++ S +I +K++ + M   A+P Y      PLS+ EL +
Sbjct: 153 DDGPTDFTTDRVDVSFRNGR-MEDSQVIAKKVIPMQMMLCASPDYAARHGLPLSVDELSR 211

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  + F     +  E    +    R    P  + L  N    ++Q  + G GIA +  Y 
Sbjct: 212 HGCVNFLLASGRVYEWEFKVGGHLRKFAPP--AMLTFNDADLVLQAVLDGHGIAQMAGYQ 269

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V ++     LV  +          Y C+        +++ F +F+  + R
Sbjct: 270 VCEHLRAGTLVACLPQYAPDDRGHYLCFLSRQHLPARMRVFIDFMTERIR 319


>gi|293607528|ref|ZP_06689863.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292814099|gb|EFF73245.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 310

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 135/290 (46%), Gaps = 11/290 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V  + +F  A+E L +S   +SR I+ LE ++ I+LF R  R ++LTE+G + +  
Sbjct: 14  VFAAVVDAKTFAAASEVLGMSPPGVSRAIARLEEKLKIRLFNRTTRSVSLTEEGRRFYEQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE         +    GKLR+       + +L   L EF+  +P+++I+ I  
Sbjct: 74  VMPHLAGLEEAAAAAAGGASAVRGKLRVNLDPVFYRIILGQRLNEFMDAHPELEIEFIAR 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD-- 187
           +   D+ MD  D A+R  +P ++S+LI RKL+   +   AAP Y+     P   +EL+  
Sbjct: 134 DSLGDLVMDGFDLALRFGEP-KTSTLIARKLLDSGIVTVAAPSYIARWGRPAKPEELESG 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL-- 244
            H  + F +  P+  + F W     R  I       L VN   +++  C+ G G+A +  
Sbjct: 193 NHRCLEFRN--PETGKPFPWEFHRRRKRILVDTQGRLTVNDPSALLNACLAGFGVAQMLV 250

Query: 245 --PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              ++++ +   LV +  +     +  Y  YP       K +AF +F+  
Sbjct: 251 LGAEHLIAE-GRLVNLFPEWTDERYPFYAYYPSRHHMPAKTRAFLDFVIA 299


>gi|218677018|ref|YP_002395837.1| Transcriptional regulator LysR family [Vibrio splendidus LGP32]
 gi|218325286|emb|CAV27288.1| Transcriptional regulator LysR family [Vibrio splendidus LGP32]
          Length = 303

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 140/301 (46%), Gaps = 13/301 (4%)

Query: 1   MSF----DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           M+     +   +R F ++AR G+FT AAE L +S+S +SRQ+S LE ++G+ LF R  R 
Sbjct: 1   MTMLNQINLSDIRSFVLIARLGNFTKAAEDLDVSRSHVSRQVSSLEKQMGVTLFIRTTRT 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEF 115
           L LT  G  L+    +    ++   I   +   +  G +++      LG+ ++   + EF
Sbjct: 61  LRLTHAGQDLYARCEQALDNIDQALIAAVDDVEEVRGDIKVNCVGGYLGEVIIADLVNEF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           + LYPDI I L   +  +D+  D  D A R+   ++ +  I RKL+ I M   A+P Y  
Sbjct: 121 MQLYPDISISLDFSSNRVDLIEDAFDIAFRMGS-LEDAGFIARKLLDIEMGTLASPDYFA 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
              +P   ++L  H+ +T           F  L    + +       LQ  +   ++Q  
Sbjct: 180 RKGKPSHPKDLIHHDCLT----GSVRKWSFQALDDTKKTVDVHVTGRLQCKNGRVLVQGA 235

Query: 236 VLGSGIALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G+GI  +P  Y +++  +  L+++ E+ + P       Y        +++ F +F+  
Sbjct: 236 KSGNGIIRVPTIYCLQELNDGQLLQVFEEWVVPKVDFSAIYHRDRYQPSRIRTFIDFVKG 295

Query: 293 K 293
           +
Sbjct: 296 R 296


>gi|323166999|gb|EFZ52738.1| hypothetical protein SS53G_2841 [Shigella sonnei 53G]
          Length = 299

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + +NLL   L EFL  +P 
Sbjct: 61  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   N+ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHNRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAMVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 239 IQIPRIAVREALRAGQLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 297


>gi|254503624|ref|ZP_05115775.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222439695|gb|EEE46374.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 305

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 125/295 (42%), Gaps = 8/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF  V   GS T     L ++ +  S++I  LE  +G +LF R  R LT TE G 
Sbjct: 4   LESLRVFTRVVELGSITAGGRDLRMTPAVASKRIKELEKHLGARLFNRTTRSLTPTEVGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +    +   +  +   S  P G LRI   +  G+ ++   + +F+  +P  ++
Sbjct: 64  VFYEHAVKALESINDAEAAVASFSDMPRGVLRITAPLGAGRRIISPLVPKFVEQFPATEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +DI  D  D A  +  P + S+L  RK+        AAP YL+    P S  
Sbjct: 124 HMRLSDRKVDIMSDGLDVAFFIGTP-EDSNLKLRKIADCPRVLCAAPGYLEKHGTPQSPD 182

Query: 185 ELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L   +HN +      P   E +  L T D P          V+    +  + + G GI 
Sbjct: 183 DLLTCEHNCLLL--RYPHSPEYYWVLETKDGPRKLQVSGKFDVDHSDVLTDWAISGYGIV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P + V ++    +LV I+ D   P       YP       K++ F +F+   A
Sbjct: 241 NKPRFDVAEHLRKGDLVEILIDTPPPPTIFGCLYPHRRLQDPKIRHFVDFVIKHA 295


>gi|152984664|ref|YP_001345633.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959822|gb|ABR81847.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 355

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 139/294 (47%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G
Sbjct: 46  TLQGMRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAG 105

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +   +E  + E   + ++P G+LR+ + + LGQ+ L   +  +  L+PD+ 
Sbjct: 106 ERYLERCRAILADIEVAEAEASGAHIRPCGRLRVQSLMGLGQHHLVPMIARYGALFPDVV 165

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+
Sbjct: 166 IELTLSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQRGVPRSV 225

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL++H  +   D  P   E + ++         P+ +   VN    + Q    G GIAL
Sbjct: 226 DELEQHVCLRLQD--PAYPEGWLFVDEQGERTVSPQ-NTFMVNVAEVMAQAARAGLGIAL 282

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+      N  L R+M        T+Y  YP       K++ + + +  + 
Sbjct: 283 LPSYVAAPALRNGELRRVMPGHTMHERTIYALYPSRRYLDAKIRTWVDLLQQEL 336


>gi|159186525|ref|NP_396116.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141585|gb|AAK90557.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 308

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 127/293 (43%), Gaps = 10/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D+L +F  +A+  S + AA  L L+ +  S ++  LE ++  +L +R  R  TLTE 
Sbjct: 1   MDVDELNLFVRIAQLRSISAAARDLGLTPAGASAKLLVLERKLSARLVHRTTRQATLTED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    E  +  L      P G LRIA      +  +   L +F   YPD+
Sbjct: 61  GLAFLPHAEHIVVAAEAARAALGREQAAPRGTLRIAAPASFARMHIVPGLADFCRQYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L + +  +D+     D A+R  + +  SS + R+L   +    A+P YL+    P +
Sbjct: 121 ALDLRISDSIVDLVEGAFDVAVRYTE-LSDSSFVARRLAPDNRVLVASPEYLEKHGRPST 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  +  G      ++ + +       I       L++N   ++      G GIA
Sbjct: 180 PDDLAEHTCLVVG-----ALDLWTFRGKGSVVIERRVTPSLRINDGTAVRDAASAGLGIA 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L+  +   +   +  LV ++ +     + T++  YP + +   K++ F +++ 
Sbjct: 235 LMATWCASEELQSGALVPVLPEYPLISTQTLWALYPSSRELAPKVRVFIDWLV 287


>gi|332142490|ref|YP_004428228.1| putative transcriptional regulator [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552512|gb|AEA99230.1| putative transcriptional regulator [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 292

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 14/294 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +  + +  F  VA  G+FT AA +L  S + ISR+++ LE ++G+KL +R  R ++LT
Sbjct: 1   MKY-LEGIAEFCAVAEVGNFTGAANKLDTSVAQISRKVASLEKQLGVKLLHRTTRSVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+            LE  Q+ +      P G +++   +  G+  +   L  F+  Y 
Sbjct: 60  EAGTLYCEQALPALKALEDAQLSVSALQNSPQGLIKLTAPVAFGEAFIAPLLNAFMQKYS 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +Q I  N+ +DI     D AIR+ K ++ S+L+ +KL T H++  A+  Y K    P
Sbjct: 120 GISVQCIFSNEKLDIVDMGLDLAIRIGK-LEDSTLVAKKLSTRHLYVCASEQYFKENGRP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGS 239
            ++++L KH L+              W   VD+ I   P    ++ NS  ++    + G 
Sbjct: 179 KTLEDLKKHTLLVGSQPY--------WRFLVDKTIRAIPVQGRVRYNSGNALCSAAIAGL 230

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A LP + V++   +  L+ +          ++  +P       K++   +F+
Sbjct: 231 GLAQLPGFYVREALASGKLIEVFPQYKDKQEAIWAVFPSNRNVAPKIRLLVDFL 284


>gi|323527294|ref|YP_004229447.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323384296|gb|ADX56387.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 324

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +R+F   A+ GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G
Sbjct: 3   NLGDIRLFVEAAQHGSLSAAGRKMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYPD+ 
Sbjct: 63  RLYLNCCRQALQSLDDAKAVLQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPDVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L +   ++  +  D AIR   P Q SSL+ RKL        A+P Y+    EP   
Sbjct: 123 FALTLSDSLSNLVQEDIDLAIRFGVP-QDSSLVVRKLARNRRVLCASPEYIARKGEPKDP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I          E         +    P  S  + N      ++ + G GIA+
Sbjct: 182 HDLANFDCIVLSTGSGPVNEWRFTRGDEVQHYTVPLDSARETNDGAVAREWALRGYGIAI 241

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + V+ +     L  ++ +   P   ++  Y        +++   +F+  +
Sbjct: 242 KSMWDVEADLRADGLKILLPEWRYPDAPLHALYHRNRFMAPRVRVLLDFLSER 294


>gi|295677632|ref|YP_003606156.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295437475|gb|ADG16645.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 317

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 126/293 (43%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +R+F   A+ GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G
Sbjct: 3   NLGDIRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEARLKARLFERTTRQLRLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYPD+ 
Sbjct: 63  RLYLNCCRQALQSLDDAEAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPDVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L +   ++  +  D AIR   P Q SSL+ R+L        A+P Y+    EP   
Sbjct: 123 FALTLSDALANLVQEDIDLAIRFGVP-QDSSLVARRLAPNRRVLCASPEYIGRRGEPKDP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G       E         +    P  +  + N      ++ + G GIA+
Sbjct: 182 LDLANFDCIVLGTTSGPASEWRFTRGDEVQHYSVPFEAARETNDGAVAREWALRGYGIAI 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + V+ +     L  ++ +   P   ++  Y        +++   +F+  +
Sbjct: 242 KSMWDVEADLRAGRLKILLPEWRYPDAPLHALYHRNRFMAPRVRVLLDFLAER 294


>gi|107027487|ref|YP_624998.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693801|ref|YP_839334.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896861|gb|ABF80025.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651801|gb|ABK12441.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 307

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 141/292 (48%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF +V R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R +T+T+ G
Sbjct: 6   NLDDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRVAMLEAQLGTRLLHRSTRRMTVTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LR++++   G++++   L +F   YP + 
Sbjct: 66  ERVFARAEKILDDVDHLVEDVSTTRTVPRGTLRMSSSFGFGRHVVAPALLDFSARYPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I    LI R+L T H    A+P YL     P S+
Sbjct: 126 VRLDLFDRLVDVAGEGYDLDVRIGDEIAD-HLIARRLATNHRVLCASPDYLARRGTPRSL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ +   +           L      +       L  N     +Q+ + G GI L
Sbjct: 185 ADLTSHDCLAIKERDHPFGVWR--LNVRGETVTVKVGGALSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              +      +   L R++ D   P+  ++  YPE +  + K++   +F+  
Sbjct: 243 RSIWEAGPLIERGELCRVLPDATQPA-NIWAVYPERVAASAKVRVCVDFLVE 293


>gi|13940787|gb|AAK50453.1| unknown [Vibrio vulnificus]
          Length = 305

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 132/292 (45%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LT+
Sbjct: 5   QINLADIRSFVLIAQLGNFTKAAEALGVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G  L        H ++   +   +      G++RI      LG+ ++   + +F+  YP
Sbjct: 65  AGKALFAQCETALHSIDQAVLAAVDDIEAVRGEIRINCVGGYLGEEVIAEVVGQFMQQYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L   +  +D+  D  D A R+ K ++ S  + RKL+ + M  YA+P YL     P
Sbjct: 125 QVRVDLDFSSHRVDLIEDEFDIAFRMGK-LEDSGFVARKLIDVEMGTYASPSYLATHGRP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +ELDKH  +T G +     +      T D  +       L+  +   +++  + G+G
Sbjct: 184 EHPKELDKHACLT-GSVTRWTFQHRQNKQTSDYQV----RGKLRCKNGRVMLKGALAGNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P            L  + ED   PS      Y        +++ F  F
Sbjct: 239 IIRVPTLYCMPELAQGLLQEVFEDWHIPSVAFSALYHRDRYQPKRIRTFIEF 290


>gi|13476459|ref|NP_108029.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14027220|dbj|BAB54174.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 306

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 144/292 (49%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA   SF  AA  L LS +++SR +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEGLAMFAKVAEERSFAAAARVLGLSVATVSRGVSRLEERLGARLFNRTSRRLALTDFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S +Y   E  +   +E S  P G +R+A  +  G   +   L +F  LYPD+ 
Sbjct: 66  HRLAERASRLYRDAEDAENAARELSASPRGLVRLAVPMSFGLRWVAPLLPDFFKLYPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + L +  +D+  +  D A+R+   +  SSL+ R+L +I     AAP YL     P + 
Sbjct: 126 IDMHLSDAVVDLIGEGFDAALRIA-VLPDSSLVARRLCSIAPFIVAAPSYLARHGRPSTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++LD H+ + +     + +  F+  A  D  +  P    L+V +  +++   + G  IA 
Sbjct: 185 RDLDAHHCLGYAYRPRQDVWHFS-NAAGDEEVVTPS-GPLRVTNSDALVPTVLAGIAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP++I  +   +  L  I+ D   P   +YF  P A     K++A   F+  
Sbjct: 243 LPEFIASEYLADGRLQAILTDWTLPRGALYFVTPSARARPAKVEAVAGFMAA 294


>gi|170695173|ref|ZP_02886321.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140025|gb|EDT08205.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 322

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 136/291 (46%), Gaps = 5/291 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D  RVF  V    +FT AA+ L L +SS+S  I  LE  +G +L +R  R ++ T+ G+
Sbjct: 20  IDLFRVFARVVECANFTRAADTLGLPRSSVSAAIQELEGRIGARLLHRTTRKVSPTQDGA 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+     +   +E T+   +++SV P G LRI     +G+ ++   L EFL  YP I I
Sbjct: 80  ALYERCLRLIADVEETENLFRQTSVGPGGVLRIDVPGRIGRLIIAPALPEFLASYPRIDI 139

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ ID+  +  DC +R+ KP   S +I R +  + +   A+P YL     P +  
Sbjct: 140 TLSLTDRTIDLIEERVDCVLRVGKP-HESGMIARPMGDLPLINVASPIYLSQHGRPCTPG 198

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++    ++ +       +  + WL          +   + VNS  + +  C+ G G+  +
Sbjct: 199 DMTNQQVVQYASPTSGRIAPWEWLDGETVRTLTTQ-GRVTVNSAEAYIACCLAGLGLIQI 257

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P Y V+ +     L+ +M +       +   YP     + +++ F +++  
Sbjct: 258 PAYDVQQHLRAGELIEVMPEYRAAPMPMNLLYPHRQHLSRRVQVFADWLDA 308


>gi|152989350|ref|YP_001348304.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964508|gb|ABR86533.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 297

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 141/287 (49%), Gaps = 7/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR++    L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRVSLP--LVSGLVLPALADFMQTYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPV-DSRLSMRELGEFQLKLVGSPGYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E++  L   D          +  N+  + + + +   GIA LPD+ +
Sbjct: 186 TCLHYRFSSTGRLEEWP-LRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPDFSI 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++      LV +++         +  +P   + + KL+AF +F+  +
Sbjct: 245 REALREGRLVSVLDAFCERRARFFLLWPSGRQVSPKLRAFIDFVAPR 291


>gi|332084583|gb|EGI89777.1| hypothetical protein SB521682_4504 [Shigella boydii 5216-82]
          Length = 299

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 61  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 297


>gi|294671297|ref|ZP_06736149.1| hypothetical protein NEIELOOT_03006 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307024|gb|EFE48267.1| hypothetical protein NEIELOOT_03006 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 297

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 143/292 (48%), Gaps = 7/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V R GSFT AA++L +S +  S+ IS LE  +G KL  R++R L LTE G++ H
Sbjct: 7   LKVFREVVRQGSFTRAADKLGISTAMASKHISHLENHIGAKLLQRNSRNLYLTEAGAEYH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R        LET        + KP G LR+   +    + +   L E+  LYP + + LI
Sbjct: 67  RECGYALETLETAAERAAGGTEKPQGLLRVTMPMWFANHHVCSWLAEYCHLYPAVSLDLI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ ID+  +  D A+R+       +LI R L  I  +      YL+    P + QE+ 
Sbjct: 127 LDNRKIDLVAEGVDLALRVSSVDLPPTLIFRPLSEIAFYLIGETEYLQRHGTPATPQEIL 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN +    +  + ++    L+           S ++ ++   + +  + G G+  LP +
Sbjct: 187 THNFVQASYVDMEHIK----LSRDGEHFNLVPNSTIRADNTPMVREMVLAGGGLGYLPAW 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            VK   D+  LVR++ +   PS T+Y  Y +    + K+++F +F+  K R 
Sbjct: 243 TVKRDLDSGRLVRLLPEWRIPSATLYAAYADRAFLSAKIRSFIDFLVEKIRQ 294


>gi|217419705|ref|ZP_03451211.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217397009|gb|EEC37025.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 433

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 110 MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 169

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 170 EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 229

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 230 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 288

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 289 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 346

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 347 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 401


>gi|209548508|ref|YP_002280425.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534264|gb|ACI54199.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 295

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 140/295 (47%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F  VA +GSF  AA +L+LS + + R++  LET+ G+KL  R  R   LTE G
Sbjct: 3   DLTNLKTFVAVATAGSFAKAAARLNLSPAMVGRRVQALETDYGVKLIERTTRTQRLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     S V  +LE         +   SG LRI+    LG   L  ++  F   +P + 
Sbjct: 63  RRFLERASRVIDELEQLNDITGPDNHGISGHLRISGPTTLGVKRLASSIARFANQHPAVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++++D+  +  D AIR+   ++ SSLI RK+ T      A+P YL     P   
Sbjct: 123 LELNLTDRNVDLIAEGYDLAIRVAH-LRPSSLIARKIGTYRFVCCASPRYLGKNGTPTHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  I   +L+P+  + +++     R +     S + +++  ++    +  +G+  
Sbjct: 182 EQLQEHRCILSLNLVPR--DQWHFEDQSGRVLAAKINSNIGIDNGEAMRVAAIEDAGLVY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            P  +V+++     L  ++ D    S  ++  +P       ++KA   +I    R
Sbjct: 240 APLVLVEEDIAAGRLTEVLADWEKYSLPIHAVHPSRQFVPRRVKAAIGWIAGDLR 294


>gi|317054158|ref|YP_004118183.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952153|gb|ADU71627.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 320

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 136/291 (46%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + VF  V   GSFT  AE++ +S + I   I GLE  +G++L  R  R  +LT+ G 
Sbjct: 24  LDSMAVFVRVVEKGSFTAVAEEMRISSTMIGLHIKGLEQHLGVRLLNRTTRRQSLTDFGH 83

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++   +   +        +P G LR+A  + LG ++L      F   +PD+ +
Sbjct: 84  DYYQRCQQILADIRDAESLASRQHQQPQGLLRVACPVSLGVHVLAALNARFQASWPDVTL 143

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D++ D  D  +++ +  Q +SL+ R+L        A+P YL+    P   +
Sbjct: 144 DIRLSDRPLDMAEDGIDVMLKIGELEQVNSLVARRLADYRSVVCASPAYLEAFGTPAHPE 203

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  + F   +      F      D+P   P    + +N+  ++ +  + G GI + 
Sbjct: 204 QLIDHRCLGFAHPLASGRWQF---IDADKPFSVPVKLVMSINNGEALRRAALQGCGIIMQ 260

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P+ ++ D+    +L+R+   + TP+  V+       +   K++ + + + L
Sbjct: 261 PEVLLADDLRSGHLIRLFNQMTTPARPVHLLTFADRQQLPKIRHYVDHLRL 311


>gi|326797095|ref|YP_004314915.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326547859|gb|ADZ93079.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 294

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 141/292 (48%), Gaps = 11/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  ++ F     SGS + AAEQL+++ + + + I+ LE+ +G +L  R  R   LT
Sbjct: 1   MDL-FQSMKAFVTTVHSGSMSAAAEQLNITSAMVGQHIASLESRLGTRLLNRTTRRQNLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G        ++  ++   ++E +  S +  G LRI   +  G ++L   L  +  L P
Sbjct: 60  DFGESYLEQCLDILERVAVAEMEAEAQSSEARGTLRITAPVTFGSSVLMPVLVRYRRLSP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ ++L ++++D+  +  D A R+ + +  S LIQRKL+   M   A+P YL+N   P
Sbjct: 120 RVKVDVVLTDQNLDLIEERVDLAFRIGE-VPDSRLIQRKLMPYKMVLCASPDYLRNQGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGS 239
              ++L  H L+ F       ++ F      +  + E   SC+  +NS  +++   + G 
Sbjct: 179 EQPEDLAHHELVRFAVSSGAPLKLF-----KNDEMREVSPSCMVTMNSGQALVNAALRGL 233

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GI + P+ +VKD   +  L  I+ D       V   Y    K T ++++F  
Sbjct: 234 GIIVQPEVLVKDHIADGTLRPILPDWQFRERPVSLLYYRDQKMTPRVRSFIE 285


>gi|254258123|ref|ZP_04949177.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254216812|gb|EET06196.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 395

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 72  MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 131

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 132 EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 191

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 192 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 250

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 251 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 308

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 309 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 363


>gi|237810985|ref|YP_002895436.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|237504241|gb|ACQ96559.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 421

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 98  MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 157

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 158 EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 217

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 218 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 276

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 277 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 334

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 335 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 389


>gi|254181679|ref|ZP_04888276.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184212217|gb|EDU09260.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 407

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 84  MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 143

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 144 EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 203

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 204 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 262

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 263 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 320

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 321 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 375


>gi|254296273|ref|ZP_04963730.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157806130|gb|EDO83300.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 397

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 74  MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 133

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 134 EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 193

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 194 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 252

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 253 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 310

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 311 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 365


>gi|172060359|ref|YP_001808011.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171992876|gb|ACB63795.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 307

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AAE L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAKAAELLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAELIESEACAQALEPHGLVRVNAPMSFGLRHLSPLLPAFLERYPRVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     A+P YL     P   
Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLDRHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++++H  +T+ +L       F   A+    +G      ++ N+   I    + G G+AL
Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRNPAS-GEDVGVSVHGRIRTNNADVIAPALLAGHGLAL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++  D   +  L  +M +       V    P  L    ++    +F+
Sbjct: 244 QPEFLAWDALQSGELEEVMPEWKIADVNVNLVTPPGLLRAARVTVLLDFL 293


>gi|332345484|gb|AEE58818.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 299

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 137/299 (45%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL  +P 
Sbjct: 61  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 297


>gi|296137223|ref|YP_003644465.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
 gi|295797345|gb|ADG32135.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
          Length = 301

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 133/293 (45%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +L  F  VA  GS T AA    ++ + I R+I  LE  +G+KL  R  R ++LT+
Sbjct: 1   MDKLKQLETFVAVATKGSLTAAAHAEGVAPAIIGRRIDALEARLGVKLLLRTTRRISLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +  +L+  +  +    VK SG LRI      G+  +   +  FL  +P+
Sbjct: 61  EGSAFLEDCQRLLAELQNAEASVSAGGVKASGHLRITAPAGFGRRHIAPLIPGFLDQHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+R+   +  SSL+  +L        AAP YL+    P 
Sbjct: 121 VSLSLDLTDRLVDLVNEGYDCAVRVGD-LADSSLVSLRLADNRRVCVAAPSYLQRHGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L +H  + +  +     +   W+   +  I   R+   +       + Q+C+ G G
Sbjct: 180 TPSDLARHQCLAYSSV---SSQPRGWMFQAEGEILHVRVAGRMDCTDGAVLHQWCLEGRG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V    +   LV ++ED   P   ++  + +      +L+ + +++
Sbjct: 237 IAWRSLWEVGASLEQGKLVALLEDYAAPPNGIFAVFTQRKHQPLRLRLWLDYL 289


>gi|107101762|ref|ZP_01365680.1| hypothetical protein PaerPA_01002806 [Pseudomonas aeruginosa PACS2]
          Length = 297

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR++    L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRVSLP--LVSGLVLPTLADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPV-DSRLSMRELGEFQLKLVGSPAYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E++  L   D          +  N+  + + + +   GIA LPD+ +
Sbjct: 186 TCLHYRFPNTGRLEEWP-LRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPDFSI 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++      LV +++         +  +P   + + KL+AF +F+  + 
Sbjct: 245 REALREGRLVSVLDAFCERRARFFLLWPSGRQVSPKLRAFIDFVAPRV 292


>gi|254249529|ref|ZP_04942849.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124876030|gb|EAY66020.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 342

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 141/292 (48%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF +V R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R +T+T+ G
Sbjct: 41  NLDDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRVAMLEAQLGTRLLHRSTRRMTVTDAG 100

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LR++++   G++++   L +F   YP + 
Sbjct: 101 ERVFARAEKILDDVDHLVEDVSTTRTVPRGTLRMSSSFGFGRHVVAPALLDFSARYPQLN 160

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I    LI R+L T H    A+P YL     P S+
Sbjct: 161 VRLDLFDRLVDVAGEGYDLDVRIGDDIAD-HLIARRLATNHRVLCASPDYLARRGTPRSL 219

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ +   +           L      +       L  N     +Q+ + G GI L
Sbjct: 220 ADLTSHDCLAIKERDHPFGVWR--LNVRGETVTVKVGGALSTNHGEVAVQWALAGRGIVL 277

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              +      +   L R++ +   P+  ++  YPE +  + K++   +F+  
Sbjct: 278 RSIWEAAPLIERGELCRVLPEATQPA-NIWAVYPERVAASAKVRVCVDFLVE 328


>gi|289627046|ref|ZP_06460000.1| LysR protein [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646298|ref|ZP_06477641.1| LysR protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298486983|ref|ZP_07005036.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158545|gb|EFH99612.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330866782|gb|EGH01491.1| LysR protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 311

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 142/297 (47%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L +++  P G+LR+         LL   L  F   YPD
Sbjct: 61  DGAAYYERVVRLLADMDDAETSLSDATSLPRGRLRVDVPSPFASMLLMPALPGFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI + + ++ +D+  +  DC +R    I   SLI R++  + +  YAAP+YL     P+
Sbjct: 121 IQIDMGVSDRIVDMIGENVDCVVR-GGEITDQSLIARRVGDLQLGVYAAPYYLTRMGTPV 179

Query: 182 SIQELDK--HNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLG 238
             +EL+   H ++ +  L  +  +   +    D   +       L V+   + +   + G
Sbjct: 180 HPRELEDSAHRIVGY--LWARTSKALPYAMHRDGEKVHVQGRYALAVDDGNAYIAAGLAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  LPDY+ + +    +L+ + +D    S  +Y  +P     + K++ F ++I  
Sbjct: 238 MGILWLPDYMARQHQVRGDLIPLFKDWQLDSMPMYVAFPPNRHISIKVRVFIDWITE 294


>gi|296157336|ref|ZP_06840172.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295892672|gb|EFG72454.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 327

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 125/293 (42%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +R+F   A+ GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G
Sbjct: 3   NLGDIRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYP++ 
Sbjct: 63  RLYLNCCRQALQSLDDAEAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L +   ++  +  D AIR   P Q SSL+ RKL        A+P Y+    EP   
Sbjct: 123 FALTLSDSLANLVQEDIDLAIRFGVP-QDSSLVARKLAPNRRVLCASPEYIARKGEPKDP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I          E         +    P  +  + N      ++ + G GIA+
Sbjct: 182 HDLANFDCIVLATATGLANEWRFTRGDEVQHYTVPFETARETNDGAVAREWALRGYGIAI 241

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + V+ +     L  ++ +   P   ++  Y        +++   +F+  +
Sbjct: 242 KSMWDVEADLRADGLKILLPEWRYPDAPLHALYHRNRFMAPRVRVLLDFLSER 294


>gi|306841126|ref|ZP_07473844.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306845476|ref|ZP_07478049.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306274127|gb|EFM55946.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306288847|gb|EFM60161.1| LysR family transcriptional regulator [Brucella sp. BO2]
          Length = 297

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE
Sbjct: 1   MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+
Sbjct: 61  AGHTYYHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P 
Sbjct: 121 IVLDVRLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L     I   D   +   ++++       +  P    +++NS ++     + G G 
Sbjct: 180 RPEDLTDRPCII--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGF 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP +I ++      L+  +++ I     +Y  YP       K++A  +F+
Sbjct: 238 CMLPAFIAEEEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289


>gi|313110787|ref|ZP_07796642.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|310883144|gb|EFQ41738.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 297

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR++    L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRVSLP--LVSGLVLPALADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPV-DSRLSMRELGEFQLKLVGSPTYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E++  L   D          +  N+  + + + +   GIA LPD+ +
Sbjct: 186 TCLHYRFSNTGRLEEWP-LRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPDFSI 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++      LV +++         +  +P   + + KL+AF +F+  + 
Sbjct: 245 REALREGRLVSVLDTFCERRARFFLLWPSGRQVSPKLRAFIDFVAPRV 292


>gi|27367782|ref|NP_763309.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27359355|gb|AAO08299.1|AE016813_51 Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 305

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 132/292 (45%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LT+
Sbjct: 5   QINLADIRSFVLIAQLGNFTKAAEALGVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G  L        H ++   +   +      G++RI      LG+ ++   + +F+  YP
Sbjct: 65  AGKALFAQCETALHSIDQAVLAAVDDIEAVRGEIRINCVGGYLGEEVIAEVVGQFMQQYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L   +  +D+  D  D A R+ K ++ S  + RKL+ + M  YA+P YL     P
Sbjct: 125 QVRVDLDFSSHRVDLIEDEFDIAFRMGK-LEDSGFVARKLIDVEMGTYASPSYLATHGRP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +ELDKH  +T G +     +      T D  +       L+  +   +++  + G+G
Sbjct: 184 EHPKELDKHACLT-GSVTRWTFQHRQTKQTSDCQV----RGRLRCKNGRVMLKGALAGNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P            L  + ED   PS      Y        +++ F  F
Sbjct: 239 IIRVPTLYCMPELAQGLLQEVFEDWHIPSVAFSALYHRDRYQPKRIRTFIEF 290


>gi|169796372|ref|YP_001714165.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213156892|ref|YP_002318937.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483833|ref|YP_002326058.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301347052|ref|ZP_07227793.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301512725|ref|ZP_07237962.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301596705|ref|ZP_07241713.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332851972|ref|ZP_08433839.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332871703|ref|ZP_08440163.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149299|emb|CAM87182.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|213056052|gb|ACJ40954.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986037|gb|ACJ56336.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332729549|gb|EGJ60887.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332731271|gb|EGJ62568.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 303

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 149/293 (50%), Gaps = 5/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEDQLGVALFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGALFYEHSRRALSEIQNAAALLDQRKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++++D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRNVDLIEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNKAGPV 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++LD+H  I   D     M+ +      D P+     + L +N   +I    +  +G
Sbjct: 181 EHIEDLDQHATI--ADPHFGQMQKWRLQKENDEPLFIKPKAKLLLNDLQAIKNAALADAG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LPD++++    +  LV++++ + + +F ++  +P       K +   +++
Sbjct: 239 IAWLPDWLIQNELQDGKLVQVLDAMSSTAFPIHLVWPTLPFMPLKTRLAIDYL 291


>gi|107022467|ref|YP_620794.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116689416|ref|YP_835039.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105892656|gb|ABF75821.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116647505|gb|ABK08146.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 310

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 135/292 (46%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA+ L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 9   DLEAWAIFARVAETGSFAKAADLLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G + L   L  FL  YP + 
Sbjct: 69  ELLRDRAIRLLADAELIENEASAQALEPHGLVRVNAPMSFGLHHLSPVLPAFLERYPRVD 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  S+L  R+L  +     A+P YL     P   
Sbjct: 129 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSTLRSRRLCAVRRPLVASPAYLDRRGRPTHP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L++H  +T+ +L       F   A+ D  +G      ++ N+   I+   V G G+AL
Sbjct: 188 RDLEQHVCLTYTNLPTPEYWRFRHPASGD-EVGVSVHGRIRTNNADVILPALVGGHGLAL 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            P+++V D      L  +M D       V    P  +    ++    +F+  
Sbjct: 247 QPEFLVWDELQRGALEEVMSDWKIADINVNLVTPPGMLRAARVTVLLDFLAE 298


>gi|330958333|gb|EGH58593.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 303

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 128/299 (42%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + +F  V RSGSF  AA QL +  +++SR+I  LE ++  +L  R  R L LT
Sbjct: 1   MVPDLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRIQQLEAQLDTRLLQRSTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +         L     +L     +P G++RIA T D         + +FL  YP
Sbjct: 61  PAGQDFYERCMGAVDGLTDAAEQLVSRREEPGGRVRIAATADFFDFFSMDWVADFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCRE 179
            +Q++ +L +   D+  +  D A R   P+Q S  + R+L+        A+P YL     
Sbjct: 121 RVQLEFVLSDDRADLIAERLDIAFR-GGPLQDSGYVGRQLIDEERDCMVASPAYLATHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S++ L  H  +      P     +  L   ++       S    N+  ++ +  + G 
Sbjct: 180 PASLESLQAHYCVCAAH--PGSFNTWRLLGPEEKLHEVQIASRFNANTAQALRKAALAGL 237

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIALLP  +++ +     LV ++      S  ++  YP        + AF   +  K +
Sbjct: 238 GIALLPTTLIRADLRKGLLVPVLTQYQRTSHGLHVLYPSRQHLPLAVSAFIGMVMEKLK 296


>gi|262371490|ref|ZP_06064805.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262313576|gb|EEY94628.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 308

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 132/302 (43%), Gaps = 12/302 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  +GSF+  A QL  + S+ISR IS LE  +G +L  R  R L L+E G 
Sbjct: 10  LQEMAIFVKVVETGSFSETARQLGYTPSAISRSISRLEKALGTQLIQRTTRKLALSESGK 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++H    E+ +  +T        S KP G +RI+    +G  L+   + EFL  YP++ +
Sbjct: 70  QVHVYCLEMLNAAQTVIESSGHFSEKPEGVVRISVPKAVGHYLIHPYIPEFLERYPEVDV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++L+++ ID   D  D AIR+     S  L  RKL  I     A P YL+    P   +
Sbjct: 130 QMLLEDRHIDFIDDQIDLAIRITNE-PSLGLKGRKLFDIEHILVATPEYLEKVSNPKHPR 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I  G+       D  W     R      +      N     +   +   GIA 
Sbjct: 189 DLKAHQCIYLGEQPS----DSKWKFQKGRVTTTVHVKGRYSANHTGIRLDAALQHMGIAS 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP ++  +      LV+++ +    ++     +  YP       K++ F  ++  K +  
Sbjct: 245 LPYFVACNALKTGKLVQVLPEWYFKTYYSGGAWLLYPATRYLPSKIQVFIQYLAEKLKHK 304

Query: 298 KF 299
            F
Sbjct: 305 DF 306


>gi|163857972|ref|YP_001632270.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261700|emb|CAP44002.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 302

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 134/295 (45%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L++F  +   GSFT AAE L+L +++ +  I  +E+ +G +L  R  R +  T 
Sbjct: 1   MDRFLALQLFNRIVELGSFTEAAELLNLPRATATHAIKQMESRLGTRLLDRTTRQVKPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +  V   LE  +  L      P G LR+         +L  ++ EF   YP+
Sbjct: 61  DGQAFYERSRRVLADLEDAEASLSTHVANPHGTLRLDVHGVHASMILLPHINEFRERYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L   ++ +D+  +  DC +R  +P + SSL+ RKL  +     A+P YLK    P 
Sbjct: 121 IDVILSSGDRLVDLVKEGIDCVVRAGQP-RDSSLVARKLADLPEIICASPEYLKRHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              +L++H  + F          F+ +  VD  + + + S  + V+         + G G
Sbjct: 180 HPGDLEQHQAVGFFSRGSSHRYPFSVI--VDGTVQQFKASGWISVSDAECYTSAALAGCG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  +P + ++       LV+++ +   P+  +   YP   + + +++ F +++  
Sbjct: 238 LIQVPRFRLEPALQAGRLVQVLPEWQCPTLPISALYPFHRQLSPRVRVFVDWVRE 292


>gi|260550578|ref|ZP_05824787.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406289|gb|EEW99772.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 296

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 134/293 (45%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR GSFT AA ++ +SQS++S  I GLE  +G+ L  R  R ++ T  G
Sbjct: 6   NYNDLYAFLMVAREGSFTKAAGKMGISQSALSHTIRGLEERLGMLLLTRTTRSVSPTAAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  S  + +++     L     +P+G +RI  +    + +L   LK+    YPD+Q
Sbjct: 66  ERLKQTISASFDQIDNELSLLTSFRDQPAGTVRINASSHAIREVLIPKLKKIAGDYPDVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI  +  D  +R    +    +  R    + M   A P Y +    P + 
Sbjct: 126 VELTANSGMVDIVAERFDAGVRFGSRVADGMIAVRISPDVKMAVIATPAYFEKYGIPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I F       +  + W    D    + +I      N    I++    G G+A
Sbjct: 186 KDLVSHQCIGFRLTTQGSV--YAWEFVKDGQETKIKIQGQWIFNESYDIVEAVRAGFGLA 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +P+ +++++     L++++E+        +  YP   + +  L+   + +  
Sbjct: 244 YIPEDLIREDLKEGKLIQVLEEYSIQFPGYHLYYPHRRQLSPALRLVIDVLRE 296


>gi|254000432|ref|YP_003052495.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253987111|gb|ACT51968.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 300

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++VF  VA   SFT AA+ L L + SIS  ++ LE  +G +L +R  R + LT+
Sbjct: 1   MDKLDAMQVFVRVAELASFTQAADSLGLPKGSISNAVTQLEARLGARLLHRTTRKVQLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +    ++  +++  +   Q++     G+LR+   +++  NL+   L EF+  +P 
Sbjct: 61  DGQRFYERCKDLLAEVDEVESLFQQTETLLRGRLRVDMPLNMAHNLVIPQLPEFMQRHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+L   ++ +D   +  DC +R+   +  S L+ R L T+ M   A+P Y++    P+
Sbjct: 121 IEIELSSTDRRVDPISEGFDCVVRVG-VLTESGLVARHLGTLEMVNCASPAYIRQYGMPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++++L  H ++ +  ++      F +L A V R    P  + + VN+  +    C+ G G
Sbjct: 180 ALEDLAAHYMVHYVSVLGAKPSAFEYLEAGVSRHCLVP--ARVTVNNSTAYSMACLAGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  +P   V+       L+ ++ +       V   YP     + +L AF  ++  K   +
Sbjct: 238 IIQVPLVAVRAYLQRGELLELLPEFKPEPMPVSLLYPHRRHLSRRLLAFMEWLTQKVHAY 297


>gi|253995840|ref|YP_003047904.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253982519|gb|ACT47377.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8]
          Length = 296

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/296 (29%), Positives = 149/296 (50%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+++  VF  V ++GSF+ AA Q+ L  S++S +IS LE  +GI L  R  R L+LTE 
Sbjct: 1   MDFNESAVFVKVVQAGSFSEAARQIGLPTSTVSTRISRLEKRLGITLLQRTTRRLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++  ++    L   +  + E+  +P GKL++    DLG +LL   ++     +P++
Sbjct: 61  GAVYYQHAAQGLSYLLEAEAAIDEARQQPQGKLKVTAPADLGDSLLANLIQRAQRDFPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+L ++ ID+  D  D AIR    ++ SSLI + L  IH   +A+  YLK+      
Sbjct: 121 EMELLLTDRYIDLVADGVDVAIRTGD-LRDSSLIAKSLGIIHWELFASKDYLKSAAPLEV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q++  H+ + F  +        N  +     I  P  +    NS   +      G GIA
Sbjct: 180 PQDIHAHHCLQFTPMGRDAWTLSNEYSH----ITIPLPARTMANSIGVVKSMAENGQGIA 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LLP ++ K    + +L+R++ D    +  V+  YP+      KL+AF +    + R
Sbjct: 236 LLPAFVCKQGLISGDLLRVLPDWQGRADPVHLVYPKQRFMPPKLRAFLDLAQDELR 291


>gi|332991888|gb|AEF01943.1| putative transcriptional regulator [Alteromonas sp. SN2]
          Length = 291

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 13/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA +GSFT AA +L  S + ISR+++ +E  +G+KLF R  R ++LT+ 
Sbjct: 1   MTWEGIVEFCAVASTGSFTAAATKLDTSGAQISRKVANVEKRLGVKLFNRTTRSVSLTQA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G             LE  ++   +    P G +++   +  G+  +   + +FL  Y  I
Sbjct: 61  GHIYFEQCQPALKALEEAELNTSQLQKVPQGLIKLTAPVAFGEAFIAPLINQFLKKYEGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++    N  +DI  +  D AIR+   ++ S+L+ +KL T  ++  A+P YL    EP  
Sbjct: 121 EVECRFTNDTMDIIDEGYDLAIRIGN-LEDSTLVAKKLATRQLYVCASPEYLNVFPEPKR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
              L +H  +             +W    +      R+   ++ NS  ++    + G G+
Sbjct: 180 TDMLSEHQCLV--------GSQPHWRFNHEGQAQTVRVKGRVKYNSGNALHHAALAGLGL 231

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP + V+++     L+ ++         V+  +P       K++   +F+  K  D
Sbjct: 232 VQLPGFYVRESLAVGKLIEVLSSYRDKREAVWALFPSNRHLVPKIRLLVDFLSAKLVD 289


>gi|298717157|ref|YP_003729799.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361346|gb|ADI78127.1| Uncharacterized HTH-type transcriptional regulator yeaT [Pantoea
           vagans C9-1]
          Length = 304

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 133/288 (46%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F      GSF+ A   L L Q +ISR ++ LE  +  +L +R  R L+LT +G + +
Sbjct: 11  MTCFVRTVERGSFSAAGRDLGLGQPNISRHVANLEEHLQTRLLHRSTRKLSLTPEGERYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E +    +E +V P+G LR+A    L    L  ++  FL  YP++++ L 
Sbjct: 71  LEARRILEAVEESDSSFRE-NVSPTGLLRVACPTALAHTFLVPHIPVFLDRYPELELDLQ 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ I++  + A+ AIR+   ++ S++  R+L        A+  YL     P + ++L 
Sbjct: 130 INDRYINLVDEGAELAIRIGH-LEDSAMRARRLGMFVRVCVASNKYLAKHGTPDTPEDLK 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KH+ + +  L       F       + I  P    L+VNS  +I ++   G+GIA  P++
Sbjct: 189 KHDCLIYTLLTTGATWRF-------QDISVPVSGRLRVNSPEAIQKFVNAGTGIAQGPEW 241

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + K   +N  L  ++ D       +   Y        +   F +F+  
Sbjct: 242 LFKEGLENGELQLLLTDYTASPVPIQAVYVANRLLPKRATVFMDFVAE 289


>gi|296115624|ref|ZP_06834251.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769]
 gi|295977873|gb|EFG84624.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769]
          Length = 304

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 130/292 (44%), Gaps = 7/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + D  R+F  +  +GSF  A+E++ +S    S+ +S LE+E+G++L  R  R L+ TE
Sbjct: 4   RLNLD--RLFVAILETGSFVAASERIGVSSGQASKMLSRLESELGVQLIQRTTRALSPTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +  + +     ++  S  PSG+LRI   +  G   L   L  F   Y  
Sbjct: 62  IGQAYYERIKVILAQRDDLDASIRNISGTPSGRLRITAPMSFGNIQLMPALLAFADRYSS 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   +   D+  D  D A+R+ + +  SSLI R+L    +   A+P YL     P 
Sbjct: 122 IRLDVSFSDHLADLVEDGFDLAVRIGR-LSDSSLIARRLCDTRIVTVASPGYLAIHGVPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL +H  I   +     +  F    T  +P+  P    +  ++  + M     G GI
Sbjct: 181 HPDELSRHACIIDTNFRTPNIWSFC-NPTSRQPMSVPISGRIAFSNGEACMTAAERGLGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP +I         LV ++ D   P+  V+  YP A     K++   +F+
Sbjct: 240 ACLPSFIAGPGIYKGTLVTLLRDAEPPALGVHALYPSARHLALKVRVLSDFL 291


>gi|330830944|ref|YP_004393896.1| LysR family transcriptional activator [Aeromonas veronii B565]
 gi|328806080|gb|AEB51279.1| LysR-family transcriptional activator [Aeromonas veronii B565]
          Length = 290

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 144/296 (48%), Gaps = 14/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + + +F  V   GSFT AAE L + +SS+S++IS LE+++G++L  R  R L+LT 
Sbjct: 3   NVDLELMGLFATVVEQGSFTRAAELLGMPKSSVSQKISRLESQLGVRLLQRTTRRLSLTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG         +     +  + +      P+G++RI      G  LL   L EF  LYP+
Sbjct: 63  QGELYVEHCQGLLALARSANLAMARLRSAPAGRVRITAPEATGTLLLGRILAEFRALYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ +D+  +  D A+R   P++ SSLI R++  +  H  AAP YL     P 
Sbjct: 123 VVLELTLSDEQLDLVGEGYDLALR-AAPLKDSSLICRRIGEVARHLVAAPAYLAAHGMPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + EL ++  +    +    + +  W          P+ +C+  NS L++ +  +   GI
Sbjct: 182 QLSELGRYACLVHSAMPVWPLLEGGWR---------PQGACV-SNSLLALREMALHDGGI 231

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP ++ + +     L +++ D   P+   Y  YP        L+   +F+  + 
Sbjct: 232 ALLPHHVCEGDLAAGRLQKVLPDQPIPANPFYLIYPSREHLAPALRTLMDFVAERL 287


>gi|325293833|ref|YP_004279697.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325061686|gb|ADY65377.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 299

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 135/293 (46%), Gaps = 7/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF   A  GSF+ A  +L LS S++S+ ++ +E  +G +L  R  R +TLT +G   
Sbjct: 7   EMEVFVAAAELGSFSAAGRRLKLSPSAVSKLVTRIEDRLGTRLLARSTRVVTLTPEGEIY 66

Query: 67  HRVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +   +  T+  +     V P G LR+  T+  G+  L     EFL LYP+I++ 
Sbjct: 67  LSRARRILADIADTEQIVAGGGKVVPRGLLRVNATLGFGERYLLPLAPEFLSLYPEIELD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  I +  +  D AIR    +  SSL  RKL  +     A+P Y++    P   Q+
Sbjct: 127 ISLTDGVISLIEERTDIAIRSGG-MADSSLKARKLKEVRRIIVASPAYIEKHGMPEKPQD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN I+F          F    T +     P      VNS +++ + C+ G G+  + 
Sbjct: 186 LAQHNCISFNFSRSLNEWPFRDPGTTEV-YRLPVTGNASVNSGMAMRRLCLTGLGLGRVG 244

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++ V+ +     LV ++ED        ++  Y        +++AF +F+  K 
Sbjct: 245 EFHVEPDIEAGLLVPVLEDYNPGDMEVIHAVYAGHDHLAARVRAFIDFVAAKV 297


>gi|190573105|ref|YP_001970950.1| putative LysR family regulatory protein [Stenotrophomonas
           maltophilia K279a]
 gi|190011027|emb|CAQ44636.1| putative LysR family regulatory protein [Stenotrophomonas
           maltophilia K279a]
          Length = 311

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 136/302 (45%), Gaps = 11/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A +GS   AA  L LS S++ ++I+ LE E+G +LF R  R + LT+
Sbjct: 1   MDSISALLAFVRTAEAGSIVGAARVLGLSASAVGKRIARLEQELGTRLFQRTTRRVHLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L +       +L   Q +L +    PSG LRI     +G   L   L  F   YP 
Sbjct: 61  EGELLLQRCRRALDELSEAQADLAQRQHAPSGLLRIGLP-TIGYRFLLPVLPGFQQRYPQ 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L  +++ +D+  +  D  IR  + +  SSL  R+L        AAP YL+    P 
Sbjct: 120 VQLELDFNDRIVDVVSEGLDAVIRSGE-LADSSLTARRLGGFRFILCAAPGYLQAHGTPG 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + EL  H  + F       +  +  L  ++   G    + +  N+  +++   +   G+
Sbjct: 179 DVSELRMHTALRFRYPTTGKLHPWQ-LPGIEGDAGARLPTAMTCNNMEAVLAAAIGCMGL 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF----IFLKA 294
           A +PD++  D   +  L R++  + T        +P     + +L+ F ++    +F +A
Sbjct: 238 AWMPDFLAADALSDGRLQRVLPALPTHQGQFSLLWPGGRHPSARLRVFIDYAVAHLFQRA 297

Query: 295 RD 296
            +
Sbjct: 298 PE 299


>gi|261820739|ref|YP_003258845.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604752|gb|ACX87238.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 300

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 129/289 (44%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F     +GSF+ AA  L++ Q ++SR ++ LE  +G++L  R  R L LT +G + +
Sbjct: 7   MTCFKRTVETGSFSAAARDLNMGQPNVSRYVAALEEHLGVRLLQRTTRQLVLTPEGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +   +  ++  L + +  P+G LR+A    +  + L   +  FL  YP + + L 
Sbjct: 67  ADVSRILDAVAESESSLSDETE-PTGLLRVACPTAMAHSFLVPQIPAFLARYPGLSLDLQ 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  + A+ AIR+  P   S+L  R++        A+  YL     P + ++L 
Sbjct: 126 LSDRFVDLVEEGAELAIRIGHP-TDSALRARRIGLFTRVYVASTDYLSRRGIPQTPEDLR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ I +  L       F       R          +VNS  +I +  + G GIA  P +
Sbjct: 185 DHDCILYSLLNTGNTWHF-------RDTEINVSGRFRVNSPQAIQEAVIAGLGIANGPAW 237

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +D   +  L +++ D   P   + F Y        +   F +FI   
Sbjct: 238 LYEDGLKSGRLCQVLCDYEAPPVPIQFLYVANRLLPKRAMVFMDFIAEA 286


>gi|191165306|ref|ZP_03027149.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|193061785|ref|ZP_03042882.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194428655|ref|ZP_03061192.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|218556071|ref|YP_002388984.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|218697230|ref|YP_002404897.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|256020868|ref|ZP_05434733.1| putative DNA-binding transcriptional regulator [Shigella sp. D9]
 gi|260846310|ref|YP_003224088.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|260857625|ref|YP_003231516.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|300815264|ref|ZP_07095489.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300822084|ref|ZP_07102227.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300907584|ref|ZP_07125220.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300916752|ref|ZP_07133463.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300922345|ref|ZP_07138467.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|301306827|ref|ZP_07212877.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|301326666|ref|ZP_07219993.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|307314351|ref|ZP_07593958.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|309796158|ref|ZP_07690569.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|331670352|ref|ZP_08371191.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331679598|ref|ZP_08380268.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332282082|ref|ZP_08394495.1| conserved hypothetical protein [Shigella sp. D9]
 gi|190904708|gb|EDV64414.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|192932575|gb|EDV85172.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194413238|gb|EDX29523.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|218353962|emb|CAV00420.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|218362839|emb|CAR00469.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|257756274|dbj|BAI27776.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|257761457|dbj|BAI32954.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|300400701|gb|EFJ84239.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300415974|gb|EFJ99284.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300421285|gb|EFK04596.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300525447|gb|EFK46516.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300532156|gb|EFK53218.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300837946|gb|EFK65706.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|300846670|gb|EFK74430.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|306906066|gb|EFN36586.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|308120219|gb|EFO57481.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|315062800|gb|ADT77127.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|315252578|gb|EFU32546.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|323376612|gb|ADX48880.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323944482|gb|EGB40555.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|324021177|gb|EGB90396.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
 gi|324116608|gb|EGC10525.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
 gi|331062414|gb|EGI34334.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331072770|gb|EGI44095.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332104434|gb|EGJ07780.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 323

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|167737295|ref|ZP_02410069.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           14]
 gi|167909709|ref|ZP_02496800.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           112]
          Length = 320

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 61  EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 121 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 180 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 292


>gi|253686726|ref|YP_003015916.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753304|gb|ACT11380.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 298

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 141/296 (47%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F VV  +GS T AAEQL  + S ISR +  LE ++G  L +R  R L+L+
Sbjct: 1   MKVTLEELQAFVVVIDTGSITAAAEQLGQTTSGISRALRRLEDKLGTTLLHRTTRRLSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+        V H +E  + ++     +PSG+LR+ +     Q+++   + EF   YP
Sbjct: 61  EEGTMFLEHARGVLHAVEHAEEQVLLRHEQPSGRLRVNSASAFMQHVIVPLVPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+   + D AIR+   ++ S++  R L    +H  A+P YL+    P
Sbjct: 121 KIILELNTDDFVIDLLEQHTDIAIRIG-TLKDSTIHARPLGASKLHIVASPEYLQQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++ L  H  + F  +        +W          P    L  ++   + Q  + G G
Sbjct: 180 RTVESLADHICLGFTQVESLN----HWPLRHGLQNFYPITPALLASNGEILRQLALRGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  +  ++++D+     LV I+ E+ +  S  VY  Y    +   ++  F +F+  
Sbjct: 236 IVRMSTFLIRDDLAAGRLVPILTEETVEASLPVYAVYYRNSQLAARITCFLDFMSE 291


>gi|167814425|ref|ZP_02446105.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           91]
          Length = 322

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 61  EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 121 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 180 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 292


>gi|296102273|ref|YP_003612419.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056732|gb|ADF61470.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 301

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 132/291 (45%), Gaps = 8/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V  +GSFT AA+ L++  +++S+ +  LE  + I+L +R  R +  T +G++ 
Sbjct: 6   AMRAFTRVVETGSFTRAADSLNMPIATLSKLVKALEAHLEIRLLHRTTRRVVTTPEGAEY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V   +E      + S   P G LR+       +++L   L +F+  YPDI+I L
Sbjct: 66  YEKAVRVLIDIEDIDTSFRVSHATPKGHLRVDIGGSTARDVLIPLLPDFMQRYPDIRIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+     DC IR   P+  S+LI R L    M   A P YLK    P   QEL
Sbjct: 126 GVADRPVDLISGNVDCVIR-GGPLNDSTLIARHLGDADMVTCATPGYLKKHGVPAYPQEL 184

Query: 187 DK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
              H LI++  L P     F +       + E  IS  L VN   + +   V G GI   
Sbjct: 185 RNGHKLISY--LSPVTGRPFPFRFRKGGEVQEIGISHYLGVNESNAHLAAAVAGLGIIQT 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             Y  K       L  I+ D    ++  +  YP+    T +LKAF  ++  
Sbjct: 243 FTYSAKTYLQAGTLQEILSDWHPAAYPFHVVYPQNRHLTHRLKAFIAWLAA 293


>gi|149191652|ref|ZP_01869895.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148834493|gb|EDL51487.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 294

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 133/301 (44%), Gaps = 13/301 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +  F  VA S  F+ AA+QL  S S +SRQ+S LE  +G+ L  R  R + LT+
Sbjct: 1   MDSFEGINEFVAVAESHGFSAAAKQLGCSTSHVSRQVSRLEERLGVALLARSTRMVNLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   ++   L+    +L    ++ +G LR++      +N +   L EF   YP+
Sbjct: 61  AGQVYYQQCKDLVIGLQQANEQLSSEQIQLNGTLRVSAAGAFAENHVAPALMEFAKGYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D + ++   D  D AIR  + +  S L+ RKLV   M A A+P YL+    P 
Sbjct: 121 LTVEMDFDTRMVNFIEDGIDFAIRYGR-LSDSGLVARKLVDRPMAAAASPEYLERYGVPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L  H+ I           D        +P+G  R+    + N+  +++  C  G G
Sbjct: 180 HPDQLRHHSCII-------ANNDHWVFEDNGKPMGSIRVDGRWRSNNSSAVVNACEQGLG 232

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  +P     D   N  LV ++        + +  Y        + +   +++     +W
Sbjct: 233 IVYMPKSSFSDAFHNGRLVPVLTPYWGKGSSSWIVYQNRRFLPMRARLAIDYLVSHFANW 292

Query: 298 K 298
           +
Sbjct: 293 Q 293


>gi|115351385|ref|YP_773224.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|172060423|ref|YP_001808075.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115281373|gb|ABI86890.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
 gi|171992940|gb|ACB63859.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 313

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 134/296 (45%), Gaps = 5/296 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+     P 
Sbjct: 121 VHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVDAHGAPH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H  +          +++         +        +VN   ++      G GI
Sbjct: 181 TPADLEQHICLGMV-APGFHFDEWALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP Y       + N+VR++ +  +    +Y  YP       K++ + +F+  + 
Sbjct: 240 GGLPLYSAIGGLRSGNIVRVLPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLRDEL 295


>gi|260459260|ref|ZP_05807515.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259034814|gb|EEW36070.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 311

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 139/295 (47%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V   GSF  AA+++ LS +++S+ +  LE  +G +L  R  R ++LTE
Sbjct: 1   MDHLTSMTVFANVVSEGSFAGAAKRMRLSPAAVSKHVHLLEEWLGARLLNRTTRRISLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ ++  +  +   +E  +    ES  +P+G LR++  I  G   L   + E+L  YP+
Sbjct: 61  VGASVYERSLRILEDVEDVRTSAAESHARPTGSLRVSAPISFGALYLGKVVAEYLAAYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+LD++ +DI  +  D A+R+  P+  S+LI R++        A+P Y+     P 
Sbjct: 121 VSVELVLDDRVVDIVEEGLDVAVRIA-PLTDSNLIARRIAPSWEVICASPEYIDRRGRPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ + +     +    F+     +  +     + +   +   +    + G+GI
Sbjct: 180 KPSDLQDHDCLDYALRAGRGKWRFD---GPEGEVAVKVSARMTATNGQLLRDAALSGAGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L P +++ +   +  L  +M        ++Y  YP     + K+++F   +  +
Sbjct: 237 VLGPTFLLGEAVRSGWLEIVMPLFKPVGRSIYAVYPSRRHLSAKVQSFVTLLADR 291


>gi|182677784|ref|YP_001831930.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633667|gb|ACB94441.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 314

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 138/298 (46%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D+  + VF  +  +GS + AA +L LS + +SR+++ LE  +G++L  R  R L  T
Sbjct: 10  MGHDFLDMLVFVRIIEAGSLSGAARELDLSLAVVSRRLARLEERLGVRLINRTTRTLAPT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+  H   + +   L+  + E+ +     +G LR+ + +  GQ  L   L +F  L+P
Sbjct: 70  EEGAAFHARCARILADLDEAEQEVTQGRDVATGLLRLTSPVAFGQRWLAPLLHDFQALHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +QI L   +  +++     D AIRL   +  SSLI R++   +    AAP YL     P
Sbjct: 130 RLQIYLDASDTVMNLVESGYDLAIRLGG-LSDSSLIARQIAPDYRVICAAPSYLARRGRP 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L +H+ I  G          +W     R I       L  N       + + G+G
Sbjct: 189 HTIEDLAQHDCIIHGRPPMD-----HWTFADGRTIKV--RGTLASNHGALAQSWALQGAG 241

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + L   + V+D+     L  ++ +   P   ++  YP +     +++   +++  + R
Sbjct: 242 LVLKSMWDVRDDVIAGRLEIVLPNFPLPMTPIHAVYPHSRYAAARVRLCVDYLIERLR 299


>gi|300313922|ref|YP_003778014.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076707|gb|ADJ66106.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 308

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 128/304 (42%), Gaps = 12/304 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF  V  SGS + AAEQL LS+  +SR ++ LE  VG +L +R  R L+LT  G++L
Sbjct: 6   AMQVFVTVVDSGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTPAGNEL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++    E  +  L      P G LRI  +    Q  L   + E+   YP + + L
Sbjct: 66  LPRCRQMLEYSEDMRHALDAPDETPRGLLRITASTSFAQTQLIQAVVEYGRRYPGVAVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  ++ +++  +  D AIR+   ++  +LI R L        A P YL     P  +++L
Sbjct: 126 LALDRTVNLVEERIDLAIRMTNRLE-PNLIARPLGVCRSIICATPDYLARHGLPRKVEDL 184

Query: 187 DKHNLITFGDLIPKCME--------DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             HN +T   +     +             A+  +P        +  N    ++Q  + G
Sbjct: 185 ALHNCLTHSYVGRSLWQFDPKKKKARSGRGASAAKPQSVAVGGSISANEVTVLLQAVLAG 244

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI  +P Y V     +  LV+++ D       +Y  Y         L+   +F+  +  
Sbjct: 245 VGIGHMPAYTVAPLVASGQLVQLLPDYEPLQLGMYGVYASRKHMPATLRTMLDFLAQRFA 304

Query: 296 DWKF 299
              F
Sbjct: 305 GQPF 308


>gi|270261913|ref|ZP_06190185.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043789|gb|EFA16881.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 296

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 128/295 (43%), Gaps = 6/295 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+ F  +AR  SFT AA ++ ++ S++S  I  LE ++G +L  R  R +  TE+G  
Sbjct: 2   DDLKAFLCIARLQSFTKAAAEIGVTPSALSHTIKTLEEKLGYRLLTRTTRSVAPTEEGEM 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R    ++ ++     +L      P+G +R+  + D  Q L++  L +FL  YP+I I+
Sbjct: 62  LMRSLGPLFEQINDELEKLGAMRNTPTGTIRLTGSDDSVQYLIRPVLADFLKKYPEINIE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +   A P Y +    P +  +
Sbjct: 122 IGIDYGFTNIVQERFDAGIRLGESIDKDMVAVRISRDWRLCVVATPSYFQQYSAPQTPND 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +HN I     I   +  + W     +     ++      NS L  +   + G GIA L
Sbjct: 182 LIRHNCINIRHSITSGI--YAWEFEKGKHQFSVKVKGQFTANSTLHQLDAVLAGIGIAYL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           PDY+V     +  L  I+ +        +  YP     +    A  + +    R+
Sbjct: 240 PDYLVAPYLQSGQLTEIISEWCPYFQGYHLYYPHRRHGSPAFMALVDILRENYRN 294


>gi|91784452|ref|YP_559658.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91688406|gb|ABE31606.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 312

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 133/296 (44%), Gaps = 13/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++      GQ+ +      +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHAMTSFGQHYVVPAAGRYQQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+  +  D ++ L   +  S L+ ++L +    A A+P YL+    P 
Sbjct: 121 VHIELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLELHGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS----CLQVNSYLSIMQYCVL 237
           +  +L +H  +     +    +      T D P GE  I+      QVN   ++      
Sbjct: 181 TPADLARHTCLQMVTPVFPTDKW-----TFDGPNGEETIALGPTTFQVNVAEAMAVAVSS 235

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+ L+P Y       +  LV ++ +  +    +Y  YP       K++ +  F+
Sbjct: 236 GMGVGLIPIYSAISGLRSGELVWLLPEYTSQEMNLYALYPSRQYLDAKIRTWIEFL 291


>gi|148548512|ref|YP_001268614.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148512570|gb|ABQ79430.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 313

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A++ L +S S++ ++++ LE+ +G++LF+R  R +TLT +G+     
Sbjct: 24  VFNRVAETRSFVAASQSLGISASAVGKRVARLESRLGVRLFHRSTRSITLTAEGTMFLER 83

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T+ EL ++S  P G+LR++        L+   L EF+ LYP +++ L   
Sbjct: 84  SRRILAEIEATEQELSQASETPRGRLRVSMPQ--VTRLVMPALAEFMALYPQVELDLDFS 141

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R  +P+  S L  + L        A+P YL+    PL  ++L  H
Sbjct: 142 DRMVDIVGEGFDVVMRGGQPV-DSRLSAKFLGHFQHRLVASPEYLRERGTPLHPRDLAAH 200

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +           +  IS +  N   + + + +   GI  LPD+ V
Sbjct: 201 TCLHYRFPSNGKLETWPLRQEHPEQAYDIPIS-MVCNHVETRVCFALNHRGITCLPDFNV 259

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                N +LV +++D +    + Y  +P   +   KL+ F +F+  + 
Sbjct: 260 GRELANGSLVSVLDDFMERRGSFYLLWPSGRQMPPKLRVFIDFMLARV 307


>gi|53729074|ref|ZP_00134172.2| COG0583: Transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208654|ref|YP_001053879.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           L20]
 gi|126097446|gb|ABN74274.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|218511608|gb|ACK77797.1| LysR [Actinobacillus pleuropneumoniae]
          Length = 297

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 133/302 (44%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF +VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+
Sbjct: 1   MDRITAIQVFLMVAETGSFTATAERLDLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       + +      +  G L+IA+    G   L   ++ FL  +P 
Sbjct: 61  AGEQAVEYCKKMTELTSAIEQDFLTKRGELRGSLKIASNAAFGGTHLLNAIRTFLAKHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQLIL +  +++  +  D A+R        +++ R L T H    A P YL       
Sbjct: 121 LNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNVVARPLFTCHSLLVATPAYLAQHGTIH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL  H  +   ++  K            +       S L +N   +++ + +   GI
Sbjct: 180 SPQELANHRYLAHANVNRKEWT----FIKDGQETVLELTSQLTINDTGALLNFTLADGGI 235

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--- 295
           A+LP Y ++       L  ++ D   P++ VY  YP   K    +++F +F+  +     
Sbjct: 236 AMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRKLPQTVRSFVDFLVEEFEGKG 295

Query: 296 DW 297
           DW
Sbjct: 296 DW 297


>gi|330909576|gb|EGH38090.1| LysR family transcriptional regulator YhjC [Escherichia coli AA86]
          Length = 323

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 140/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M  YA+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNYASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+        S L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGSMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|289667986|ref|ZP_06489061.1| transcriptional regulator [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 325

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 138/293 (47%), Gaps = 6/293 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           S D  + LR F  VA  GSFT AAE L L ++S+S  +  LE  +G +L +R  R + LT
Sbjct: 22  SMDTMESLRAFLRVAELGSFTRAAETLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  ++ + ++   ++  Q   Q    +  G+LR+  +  + ++ +   L  FL  +P
Sbjct: 82  GDGTAFYQRSRDLLDDMDELQSMFQRERSQLRGRLRVDMSAGIARHFVIPALPAFLAQHP 141

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q+++   ++ +D+  +  DC +R+   ++ ++L+ R L    + + A+  YL     P
Sbjct: 142 QLQVEISGTDRRVDVVREGFDCVLRVG-TLEDTNLVARPLGAFRIVSCASAQYLARRGTP 200

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L +H+L+ +   + +    F +       +  P    + VN+    +   + G G
Sbjct: 201 HCLDDLAQHDLVHYVPTLGQRSPGFEYYDGQAYQLL-PMRGPVTVNNGDGYLAAALAGLG 259

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   P   ++ +     LV I+ ++      V   Y +      +++AF +++
Sbjct: 260 IIQAPASPLRAHLHSGALVEILPNLAVEPMPVTLLYAQRRHLPQRVRAFMDWV 312


>gi|226946031|ref|YP_002801104.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226720958|gb|ACO80129.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
          Length = 303

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 137/295 (46%), Gaps = 12/295 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LR+F  V  SGS + AA   H++  + SR++  LE  +G++L  R  R  +LTE+G
Sbjct: 5   DISLLRLFVAVVESGSLSSAARAQHITLPAASRKLRQLEESLGVRLLQRTTRRQSLTEEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+R   +V   LE  + +L   S   SG+LR+ T I LG+  +   L EF  L+P++Q
Sbjct: 65  ELLYRRAVQVLADLEQVEQQLLRKSAVVSGQLRVTTPISLGRRRIAPLLAEFCALHPELQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R    ++ SS I R L   H    A+P Y++   EP S 
Sbjct: 125 VQIELSDSVLDLVASGMDFAVRFGG-LEDSSYISRPLAPNHRVLCASPEYIRRHGEPRSP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ +  G                   +     + L  +    + Q+ + G GIAL
Sbjct: 184 ADLAHHHCLLIGQQSQADWR--------FEEVTVRISARLVASDGEVVHQWALDGHGIAL 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V D+     L +++     P+  ++  YP       +++A  +++    R
Sbjct: 236 KSIWDVADDLRSGRLRQVLAGHRIPAAPLHAIYPHKHHVAPRVRACIDYLAAHLR 290


>gi|217423539|ref|ZP_03455040.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217393397|gb|EEC33418.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 299

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 141/299 (47%), Gaps = 8/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP 
Sbjct: 61  DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVELGVTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H  + +       +  + W+   +      R + + VNS  + +  C+ G G+
Sbjct: 180 TPADLERHRPVNYASPSNGRVAPWEWVEGDEVKRIALR-ARVTVNSAEAYIACCLAGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
             +P Y V  +     LV ++ D       +   YP     + + + F  ++   L+A+
Sbjct: 239 IQIPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLQAK 297


>gi|167564682|ref|ZP_02357598.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 305

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 143/291 (49%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE G
Sbjct: 6   NLDDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++  T ++   ++    ++  +   P G LRI+++   G+++L   L +F   YP + 
Sbjct: 66  ERVYAWTEKILDDVDHLVEDVSTTRNVPRGTLRISSSFGFGRHVLAPALLDFNERYPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I    LI ++L T +    A+P YL     P  +
Sbjct: 126 VRLDLFDRLVDVAGEGFDLDIRIGDEIAD-HLIAKRLATNYRVLCASPAYLARYGTPRQL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  +   +   +      W  T        ++   L  N     +Q+ + G GI 
Sbjct: 185 ADLAAHQCLAIKE---RDHPFGVWRLTARGETSSVKVGGALSTNHGEVAVQWALAGRGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   +       +  L R++ D I P+  V+  YP  L  + K++   +F+
Sbjct: 242 LRSIWEAGPLLASGELKRVLPDAIQPA-NVWAVYPARLAASAKVRVCVDFL 291


>gi|156934372|ref|YP_001438288.1| hypothetical protein ESA_02203 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532626|gb|ABU77452.1| hypothetical protein ESA_02203 [Cronobacter sakazakii ATCC BAA-894]
          Length = 311

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 137/289 (47%), Gaps = 5/289 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   LR+F  VA +GSF    + + L++S+  + ++ LE  +  +LF R  R L+LT +
Sbjct: 16  LDIHTLRIFVAVAEAGSFVAGGKAMGLTRSAAGKALARLEAYLETRLFQRTTRSLSLTAE 75

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++   L   +  ++++     G LR+  +   G+ ++   ++EFL   PD+
Sbjct: 76  GHAFYHRCCQILEDLADAESSIRQNPRLAKGILRLTVSEGYGKMIVLPFIREFLHRSPDV 135

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I++   ++ +D+  +  D A+R+   + S   I + +        A+P YL+    P S
Sbjct: 136 SIEVSFSDRVVDLVEEGFDLALRVGSGVTSYQYITQVIDRTTPQLIASPDYLQEWGMPTS 195

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL  H  + +G  +      +N + T    +     + ++ +S  +I    ++G GI 
Sbjct: 196 LAELKNHRRLVYG--LGAATTAWNLIDTRQGQLALNGRNYVRFDSGDAIRTAALMGLGIG 253

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP ++V+++     L+ ++ +    +  ++  YP       +++AF +
Sbjct: 254 FLPSFMVQNDIQQGRLIHVLPEAQGENVAIHAIYPNRRHLPVRVRAFID 302


>gi|299534162|ref|ZP_07047513.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298717809|gb|EFI58815.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 303

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 5/293 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ L VF  VA   SFT AAEQL L++S +S  +  LE ++G +L  R  R + L+  
Sbjct: 1   MDFNALHVFTRVAELSSFTLAAEQLGLTKSRVSTVVQQLEKQLGTRLLQRTTRHVRLSAD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +    + E+   LE  Q   Q ++    G LRI     L ++++   L EFL  +P +
Sbjct: 61  GEQFLERSKELMADLEQLQAMFQPAASGLRGSLRIDMPNSLARDVVIPKLPEFLSAHPLL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +   ++ +D+  +  DC +R+  P+  + LI R +  + M   A+P YL+    P +
Sbjct: 121 EVGISTSDRRVDVVQEGFDCVVRIG-PLADTDLIARTIGAMEMCNLASPAYLERHGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +H +I + + + +    + +    +  +  P  S L VN   +    C+ G G+ 
Sbjct: 180 LADLSRHRIIHYANQLGRHGAGWEYQRGKEIAL-HPVRSALVVNGTDAYQTACLAGLGLI 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             P    +   D   LV +M D       V   YP       ++ AF N+I  
Sbjct: 239 QAPVRGARHLLDQGLLVEVMRDFRAAPMPVSLLYPHRRHIAPRVTAFLNWITE 291


>gi|167718264|ref|ZP_02401500.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           DM98]
          Length = 298

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S +PSG LR+     LG+ L+   L  F   YPD
Sbjct: 61  EGAAYYEHCIKIITEIAETDASFQVGSRRPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 121 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 180 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 292


>gi|330890318|gb|EGH22979.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 303

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L +R  R L LT
Sbjct: 1   MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLHRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H         L     +L     +P G+LRIA   D         + +FL  YP
Sbjct: 61  QAGEDFHERCVGAVDGLMDAAEQLVSGREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDSMVASPAYIAAHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+Q L  H  ++     P     +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGPDAKMHEVQMASRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K RD
Sbjct: 238 GIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLRD 297


>gi|313201786|ref|YP_004040444.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441102|gb|ADQ85208.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 305

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 88/300 (29%), Positives = 154/300 (51%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L +F  V   GSF+ AA++LH+ +S++SR+++ LET++G +L  R  R LT+T
Sbjct: 1   MKLEANDLLLFARVVDEGSFSRAADRLHIPKSTLSRRMAALETQLGERLLLRTTRKLTVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ +     +V  ++E T    Q   V+PSG+LR++   D G N+LQ  L EF + YP
Sbjct: 61  DFGNAVLAHAHQVTAEVEATLALTQHRQVEPSGRLRLSMPGDFGINILQALLAEFAMRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +++ +  + +D+  +  D AIR+      +SL  R++ T     YAAP YLK    P
Sbjct: 121 AISLEMDISPRRVDLIGENFDLAIRMGDLPDDTSLAARRIATFETGLYAAPAYLKKRGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
              + L +H+ +    L+ +  E   W    D+   +   I  +  NS   +++  + G 
Sbjct: 181 HEPEALMEHDALH---LLTRRGEPMLWQLKRDQAQWQGTPIGKVSANSPAILVRMAISGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA+L +   +       LVRI+ED   PS T +  +P       + + F + +  +  +
Sbjct: 238 GIAMLGEPFAEPYVKAGELVRILEDWHLPSVTAWAVFPGRRLMPARTRVFLDALMARFAE 297


>gi|262278580|ref|ZP_06056365.1| regulatory protein [Acinetobacter calcoaceticus RUH2202]
 gi|262258931|gb|EEY77664.1| regulatory protein [Acinetobacter calcoaceticus RUH2202]
          Length = 295

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 144/292 (49%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +   VF  +A +GS   A   L +S S++ + +  LE ++G++LF+R+ R + LT 
Sbjct: 1   MDSLNGFTVFVKIAETGSIVAAGRSLGISASAVGKSLIRLEEKIGVRLFHRNTRSINLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G      +  +  ++E  ++EL ++   P G+LR++    L  +L+   L +F+  YP+
Sbjct: 61  EGILFLERSRRILAEIEAAEMELSQAIKSPQGRLRVSLP--LVSSLVLPILGDFMQEYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++ +D+  +  D  +R   P   S L   KL T      A+P YL     P 
Sbjct: 119 IELDLDFTDRLVDVIEEGFDAVVRTGIP-TDSRLKASKLGTFRQLLVASPAYLLQRGRPT 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L KH+ + +       +E +    T + P  +  IS +  N+  + + + + G GI
Sbjct: 178 VPADLLKHSCLHYRFSHSGKLEKWPLKTTENEPELQLPIS-MICNNIETRVCFALKGRGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LPD+ +K+      LV+++ + +  +      +P +   + K++AF NF+
Sbjct: 237 ACLPDFSIKELLNTNQLVQVLPEFVDRTGVFNILWPASKHPSPKVRAFVNFL 288


>gi|260568564|ref|ZP_05839033.1| LysR substrate binding domain-containing protein [Brucella suis bv.
           4 str. 40]
 gi|260155229|gb|EEW90310.1| LysR substrate binding domain-containing protein [Brucella suis bv.
           4 str. 40]
          Length = 297

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE
Sbjct: 1   MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+
Sbjct: 61  AGHTYYHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P 
Sbjct: 121 IVLDVRLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPKLIARVGKPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L     I   D   +   ++++       +  P    +++NS ++     + G G 
Sbjct: 180 RPEDLTDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGF 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP +I +D      L+  +++ I     +Y  YP       K++A  +F+
Sbjct: 238 CMLPAFIAEDEIEQGRLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFM 289


>gi|153831537|ref|ZP_01984204.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148872047|gb|EDL70864.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 299

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 125/291 (42%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE+ +L+ S +S++I+ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVIEMGSFSKVAEENNLTNSVVSKRIARLEEEIGAQLLYRTTRKLTLTEAGKV 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P+   +
Sbjct: 124 MSLDNRFVDLVAGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIVKNGKPIEPID 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + +        +                      ++  ++ +  + G GIA +P
Sbjct: 183 LTTHNCLQYAYQTTGATDW--QFKGKQGDYIVKVSGSFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV I  +++     +Y  YP   +   K+K     I  +
Sbjct: 241 RCLVYHDIRSGELVDIFPELVGKKLGIYAVYPFTRQPPNKVKLLIEHIRER 291


>gi|218516956|ref|ZP_03513796.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 363

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 148/310 (47%), Gaps = 20/310 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 3   DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    + +FL ++P+IQ
Sbjct: 63  RAYYNRCSEPLSHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISDFLKVFPEIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N  +D+  +  D  IR  + ++ S+++ ++L     +  AAP YLK    P   
Sbjct: 123 IDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPDYLKGRAPPSKP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L+ H  +       +      W     R   + R+S  +    + ++  +   G GI 
Sbjct: 182 EDLEDHRCVLLNGRNGEG----EWHLVSGRKSVDLRVSGPISSRDFDAVSAFTYRGHGIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN---------FI 290
           LLP     +      LVR++ D  +P   V+  YP       +L+ F +         ++
Sbjct: 238 LLPSTYCDEQIRRGELVRVLPDWSSPEIFVHAVYPTRRFLPLRLQVFLDALKAWKSPLWL 297

Query: 291 --FLKARDWK 298
              L++RDW+
Sbjct: 298 PIALRSRDWR 307


>gi|330819148|ref|YP_004348010.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327371143|gb|AEA62498.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 302

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 142/298 (47%), Gaps = 7/298 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF +V R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +T+ G
Sbjct: 6   NLDDLRVFSIVVRVASFSAAAEQLGVSPAYVSKRVALLEGQLGTRLLHRSTRRVAVTDSG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G+++L   L +F   +P I 
Sbjct: 66  ERVLAWAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVLAPALLDFSERFPQIN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I +  LI ++L T +    A+P YL+    P  I
Sbjct: 126 VRLDLFDRLVDVAGEGFDLDVRIGDEI-AEHLIAKRLATNYRVLCASPAYLERHGAPRQI 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +   +           L              L  N     +Q+ + G GI L
Sbjct: 185 ADLGSHQCLAIKERDHPFGVWR--LTQRGETSSVKVGGALSTNHGEVAVQWALAGKGIVL 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +      D+  L R++ DV  P+  V+  YP  L  + K++   +F+      W+
Sbjct: 243 RSIWEAGPLLDSGALKRVLPDVTQPA-NVWAVYPARLAASAKVRVCVDFLAEAFAQWR 299


>gi|323525077|ref|YP_004227230.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382079|gb|ADX54170.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 305

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S  ++SR ++ LE  +G +LF R +R L LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARAMGVSVPTVSRAVARLEERLGARLFNRTSRQLALTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     +VY   E  +   +E S +P G +R+A  +  G   +   L +FL  YP++ 
Sbjct: 66  RTVCEKAGDVYRLAEDAENAAREMSAEPRGLIRLAVPMSFGVRWVAPLLPDFLRRYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D A+R+   +  SSL+ R+L  +     A P YL+ C  PL  
Sbjct: 126 VDLHLSDATVDLVAQGFDAALRIAA-LPDSSLVARRLCAVSQLLVATPGYLQRCGRPLHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL     +T+       +  F                 L+VN+  +++   + G  IA 
Sbjct: 185 RELAARPCLTYAYRARSDVWRFT--NDAGEEEAVTPAGPLRVNNADALLPTLLAGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD++  +   +  L  I+         +YF  P A     K+ A  +F+  
Sbjct: 243 LPDFMASEYLADGRLEAILSGWHLTRGGLYFVTPSARARPAKVAALADFLAA 294


>gi|71280276|ref|YP_271335.1| LysR family substrate binding transcriptional regulator [Colwellia
           psychrerythraea 34H]
 gi|71146016|gb|AAZ26489.1| substrate-binding transcriptional regulator, LysR family [Colwellia
           psychrerythraea 34H]
          Length = 300

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 136/287 (47%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F ++  + SF  AA+   +S +++S++IS LE  +GI+L YR  R L+LTE G  L
Sbjct: 6   ELALFSLIVEAKSFNKAAQLAEISPAALSKKISKLEKNLGIQLLYRTTRRLSLTEAGEIL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  + ++  ++      +   S   SG +++      G+ +L   + EF  L+P + +++
Sbjct: 66  YSHSKDINKQVNDAVSAVSSFSEGLSGTIKMTVPTISGELILAQAVAEFCQLHPKLSVEM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+N+ +D+  +  D AIR    +  SSLI + L+  +     AP Y++    P + QEL
Sbjct: 126 RLENEFVDLIKEGQDLAIRTG-VLSDSSLIAKPLLQSNWIVCCAPSYIEKHGTPQTPQEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +        + +   +  D             N+  ++ +  + G GI  +P 
Sbjct: 185 SRHNCMAYTYQDKGAHDWY--FSQSDEAYYVKISGNFATNNSQALRKAALAGYGIVYVPR 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V D+    +LV+++ +       +Y  YP     + K++     I
Sbjct: 243 CSVYDDMQRGDLVQLLPEFHGRQLGIYAVYPYTKHQSQKVRLLIEHI 289


>gi|124383352|ref|YP_001026627.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126448992|ref|YP_001080090.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|167003408|ref|ZP_02269194.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254358879|ref|ZP_04975152.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|124291372|gb|ABN00641.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126241862|gb|ABO04955.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|148028006|gb|EDK86027.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|243061048|gb|EES43234.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 299

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 137/297 (46%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E  +   + S V PSG LR+     +G+ ++   L EFL  YP 
Sbjct: 61  DGAALYERCLRLIADVEEAENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVELGVTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H  + +       +  + W+   +      R + + VNS  + +  C+ G G+
Sbjct: 180 TPADLERHRPVNYASPSNGRVAPWEWVEGDEVKRVALR-ARVTVNSAEAYIACCLAGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V  +     LV ++ D       +   YP     + + + F  ++    R
Sbjct: 239 IQIPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLR 295


>gi|296389273|ref|ZP_06878748.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 297

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR++    L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRVSLP--LVSGLVLPALADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPV-DSRLSMRELGEFQLKLVGSPTYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E++  L   D          +  N+  + + + +   GIA LPD+ +
Sbjct: 186 TCLHYRFSNTGRLEEWP-LRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPDFSI 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++      LV +++         +  +P   + + KL+AF +F+  + 
Sbjct: 245 REALREGRLVSVLDAFCERRARFFLLWPSGRQVSPKLRAFIDFVAPRV 292


>gi|76810121|ref|YP_332968.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|167823599|ref|ZP_02455070.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167910386|ref|ZP_02497477.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|226198654|ref|ZP_03794220.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254188333|ref|ZP_04894844.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254258856|ref|ZP_04949910.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|76579574|gb|ABA49049.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|157936012|gb|EDO91682.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|225929397|gb|EEH25418.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254217545|gb|EET06929.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 299

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 138/297 (46%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP 
Sbjct: 61  DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVELGVTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H L+ +       +  + W+   +      R + + VNS  + +  C+ G G 
Sbjct: 180 TPADLERHRLVNYASPSNGRVAPWEWVEGDEVKRVALR-ARVTVNSAEAYIACCLAGLGP 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V  +     LV ++ D       +   YP     + + + F  ++    R
Sbjct: 239 IQIPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLDALLR 295


>gi|120598139|ref|YP_962713.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120558232|gb|ABM24159.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
          Length = 337

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 133/288 (46%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G  L+
Sbjct: 32  IAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGHLLY 91

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    E     +   +    G L++  +   G   +   L  F+  +P++++Q+ 
Sbjct: 92  LQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMAKHPELELQVS 151

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   ++L 
Sbjct: 152 LLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLVASPDYVAKHGEPTRPEQLV 210

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            HN + +     +  E   W         E  +S   +V++  ++    + G G+  L  
Sbjct: 211 DHNCLVY---QGEWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVYLAS 267

Query: 247 YIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+++D      LV +++D  +T    +   YP       K+ AF  FI
Sbjct: 268 YLMEDEITKGTLVPLLKDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFI 315


>gi|157960433|ref|YP_001500467.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845433|gb|ABV85932.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 303

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 145/289 (50%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA ++ + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +  S +  ++E  +  ++ +    SG LRIA  +   Q L+      FL LYP+I+
Sbjct: 63  ALFFQHCSSISDEIEAAKATVENTHNDVSGLLRIAIPVSFSQELIATLCSGFLRLYPNIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDSDVGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPGYLKIHGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L +H+ I  G      +      A       + ++   +VNS + + Q  +   GIA+
Sbjct: 182 QDLAEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV---RVNSAVMVKQLVMDDFGIAM 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L + + K+   + +LV I+++    +F VY  Y    +    +  F +F
Sbjct: 239 LSNSVCKNELASGSLVPILQEWPMEAFKVYGVYSSRRQLATNISVFLDF 287


>gi|78066418|ref|YP_369187.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967163|gb|ABB08543.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 308

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 137/294 (46%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VA +G F+ AA ++ ++ SS++R +  LE  +G  L  R  R +TLT+ G+  
Sbjct: 6   ALRAFIDVAETGGFSKAARRMGVATSSVTRLMDALEQSLGSALLTRTTRQVTLTDAGAAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + V   L+     + ++ +   G LR++  +  G+  L  ++  FL  +P + + L
Sbjct: 66  LEQITRVLSDLDEADGSVSDTGIDAVGPLRVSMPVTFGRLCLGPHIASFLQQHPRVSLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  +D++ +  D A+R+  P    +LI  +L   H +  A+  YL++   P S ++L
Sbjct: 126 VLSDSTLDLAAERIDVAVRIGSPANQPNLIVNRLAEHHRYVVASHDYLQSNGVPASPEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + F          F      D  +       L VN+   + +  + G GIALLP 
Sbjct: 186 RHHQCLRFAYEAALQRWSFT---RTDGTVHVEINGRLSVNNSDVLREAVISGFGIALLPQ 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLK 293
           ++V+++     L R+ ED           VY  Y    +++ K+ A  +F+  +
Sbjct: 243 WLVEEDVVAGRLRRLFEDYSVNPLDQTVCVYAAYLPNRRHSRKVHALLDFLRHR 296


>gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas
           arsenicoxydans]
 gi|133737918|emb|CAL60963.1| putative transcriptional regulator (LysR family) [Herminiimonas
           arsenicoxydans]
          Length = 305

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F ++ + GS   AA++L ++  S+S++++G+E  + ++L  R  R ++LT 
Sbjct: 1   MDGISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G       + +  +LE  +  +   +V   G L+I+ T   G+  +   L  F  LYP+
Sbjct: 61  EGEIYLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +QL L ++ +++     D  IR  + +  + L  RK+        A+P YLKN   PL
Sbjct: 121 VDVQLHLTDRPVNLVEQGFDADIRFGQ-LPDARLTARKIADNRRLVCASPAYLKNHGIPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L KHN I   +            ++  +         L  N       + + G GI
Sbjct: 180 TPRDLQKHNCILLRESDEIYGSWH--FSSGTKQETVKVRGSLSANDGECATAWALDGQGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +  ++ V     +  L  ++ED   P   +Y  +P     + K +A  +F+   
Sbjct: 238 VVRSEWDVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFMLQA 292


>gi|332995665|gb|AEF05720.1| LysR family transcriptional regulator [Alteromonas sp. SN2]
          Length = 303

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF   A  GS + A  +L++S +  ++ +  LET +G KL +R  R L+LT+ G +  
Sbjct: 8   MQVFVQAASRGSLSAAGRELNMSPAMATKHVDSLETRLGTKLLHRTTRQLSLTDAGREYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   LE  + E+     +  G+LR+   +  G   +   + EF   YP +++ L 
Sbjct: 68  QACQRILQDLEEAESEVSSQQHQAMGRLRLNAPLSFGTRFIAPLIPEFTHRYPLVEVDLG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+  +  D  +R+   +  S L  R+L    M   A+P YLK    P  + EL 
Sbjct: 128 LSDTQQDLLKESWDLTVRIGH-LADSDLRARRLGNCPMRLCASPEYLKKHGTPNRVAELS 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN +++   +        W    D  I  P    L  N+  +++   V G GI   P++
Sbjct: 187 NHNCLSYS--LSSAQRGGTWAFGQDGKIQVPVTGNLMSNNGDALLAAAVKGQGIIYQPNF 244

Query: 248 IVKD---NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
           IV +   +  LV    D        ++  +    +   K++A  +++  
Sbjct: 245 IVSEALASGALVAFELDHPPLDLGGLHVLFAPDRRLPLKVRAMIDYLVE 293


>gi|170767064|ref|ZP_02901517.1| transcriptional regulator, LysR family [Escherichia albertii
           TW07627]
 gi|170124502|gb|EDS93433.1| transcriptional regulator, LysR family [Escherichia albertii
           TW07627]
          Length = 299

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 130/292 (44%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALENQLGTQLLQRTTRRVRLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   ++   L       Q      SGKLR+     + +NL   +L +FL  YP 
Sbjct: 61  DGMTYYQRAKDILSNLNELDGLFQHDVTSISGKLRVDIPPGIAKNLFLPHLPDFLYQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   +  +DI  D  DC +R+   +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSSDHPVDILRDGFDCVVRIG-TLPDDGMITRPLGKLTMVNCASPHYLTRFGYPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++  L  H L+ +   +      F  +A+ +          L VNS  + +   + G GI
Sbjct: 180 NLDNLASHALVHYTPNLAVHPLGFE-VASDNGVQWVKSGGMLTVNSSETYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P  IV++      L+ ++         +   YP+  + + ++  F  ++
Sbjct: 239 IQIPRVIVREALRAGRLIEVLPGYRAEPLLISLVYPQRRELSRRVNLFMQWL 290


>gi|330821834|ref|YP_004350696.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373829|gb|AEA65184.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 307

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  V  +GSF   A  L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVVETGSFAKTANLLGISQPTVSKAIARLEQRLGTMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L     ++    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAVQLLADAEMIENEASAQALEPHGTVRLNAPMSFGLRHLSPLLPAFLERYPGVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L ++ IDI     D AIR+   +  SSL  R+L  +H    A+P YL+    P   
Sbjct: 126 VDLVLTDQIIDIVSSGCDVAIRIAD-LSDSSLRARRLCAVHRPLVASPEYLERHGRPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++LD+H  + + +L       F  + + D+    P    ++ N+   I+   + G G+AL
Sbjct: 185 RDLDRHVSMIYTNLPSPDYWRFRHVDS-DQEFAVPVRGRMRTNNADVILPALLAGQGLAL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            P+++V D   +  L R+M D       V    P  +    ++    +F+  
Sbjct: 244 QPEFLVWDALKSGALERVMCDWRIADINVNLVTPPGMLRAARVTVLLDFLVE 295


>gi|170696183|ref|ZP_02887317.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138911|gb|EDT07105.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 342

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 135/289 (46%), Gaps = 5/289 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF  +  + SF+ AA+ L+L ++S+S  I  LE  + ++L  R  R L+LT  G+  
Sbjct: 15  AMQVFTRIVDANSFSRAADALNLPRASVSNIIQNLEAHLKVRLLQRTTRRLSLTPDGAAY 74

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  ++   +     S   P G+LRI     LG+ L+   L EF   YP +++ L
Sbjct: 75  YERCVRILAEVREAESAFSISGHVPRGRLRIDMPGALGRLLVMPELFEFHAKYPALELVL 134

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             + + ID+  +  DCAIR+   ++ SSL+ R++  +     A+P YL +   P ++  L
Sbjct: 135 GFNERRIDLIQEGIDCAIRMGA-LEDSSLVARRIGLVPYVTVASPGYLSSHGVPRTVDAL 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            KH  + +         DF+++    + +       + VN   + +   + G GI  LP 
Sbjct: 194 QKHTAVKYFIDQSGRALDFDFVVGA-QAVQVSMRGTVAVNDAEAYLSCGLKGLGIIQLPF 252

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++ +   +   L+ ++ D       +   YP  L  +  ++ F ++I  
Sbjct: 253 FMARTYLETGKLIEVLPDFKPLPRPISAVYPHKLHLSPNVRMFVDWIVE 301


>gi|113868110|ref|YP_726599.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526886|emb|CAJ93231.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 307

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 135/296 (45%), Gaps = 6/296 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA +GS + AA  L ++ +++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 11  ELGFFTSVATAGSLSAAARDLGITTAAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVY 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++     L  S  +PSG LR+  T+  G+  +   + E++  YP++ +QL
Sbjct: 71  LEHARRILSEIDDLDQILTRSKGRPSGLLRVNATLGFGRMHVAPVISEYVATYPEVDVQL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  +R  +P   + ++ RKL        A+P YL++   P +  +L
Sbjct: 131 QLSADPPPLTEDAFDVCVRFGQP-PDARIVARKLAPNRRLLCASPKYLRSHGTPHTPADL 189

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +HN I    G          +   T  R         L  N     + + + G GI + 
Sbjct: 190 RQHNCIGIRQGSDAYGVWRLTSGKGTKARTESVHVRGNLTTNDGEIAVNWALQGHGILMR 249

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            ++ ++    +  LV+++    TP   +Y  Y +  + + +++ F  F+  +  ++
Sbjct: 250 AEWDIERFLRSGRLVQVLPQYATPEADIYAVYQQRHQLSSRIRLFVEFLAARFSEF 305


>gi|330818714|ref|YP_004362419.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327371107|gb|AEA62463.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 311

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 15/300 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +R F   A SGSF+ AA+++ +  S++SR +S LE ++GI LF R  RGL LTE
Sbjct: 1   MDYFSAIRAFLHAAESGSFSKAADRIAVKTSTVSRYVSELERDLGIALFNRSTRGLVLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V   L+  +      +  P G LR+      G   +  +L EF   YP 
Sbjct: 61  GGRVFREHAQAVLAALDEAREATSSLNASPRGLLRVTMPRAFGLRHVIPHLPEFTARYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I  +L ++ +++  +  D AIR+   +  S LI R+L        A+P YL+    P 
Sbjct: 121 IDIDAVLSDETVNLIDNGIDLAIRIG-VLPDSQLIARRLAMHRRIVCASPTYLEQHGAPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA-----TVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +   L  H ++ F  L+P     F   A      VD P        L+ +   ++ Q  +
Sbjct: 180 TPAALAGHEVLRFP-LMPDDRWWFAARAPRDEEQVDEPFSVQLRGRLRADDTDALRQLAI 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
            G GIALLP +       +  LV ++ D    +      ++  YP     + K++AF +F
Sbjct: 239 AGCGIALLPVWALGHALRDGRLVHLLADWDVQTARTASAIWAVYPPKKTVSSKVRAFIDF 298


>gi|169796328|ref|YP_001714121.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|301347079|ref|ZP_07227820.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB056]
 gi|301510611|ref|ZP_07235848.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB058]
 gi|301595033|ref|ZP_07240041.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB059]
 gi|332852016|ref|ZP_08433883.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332871769|ref|ZP_08440209.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149255|emb|CAM87138.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|332729593|gb|EGJ60931.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332731239|gb|EGJ62537.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 301

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 1   MS-FDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           MS FD +   +L +F  V   GSF+  A   +++ S++S+ IS LE  +G++L  R  R 
Sbjct: 1   MSYFDINRSGELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQ 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
             LT +G + +    ++ + L+  +  +  +   P G++RI T+     + L   +  F 
Sbjct: 61  FQLTSEGCQFYEQGIQILNDLDELEQSVTANH-IPKGRIRIHTSFSYWTHFLLPCISLFN 119

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP+I+++  L ++ I++     D AIR   P++SS+L+ R L + + H+  +P Y++ 
Sbjct: 120 QRYPEIELEAHLSDEVINLVEQRIDVAIRTG-PLKSSNLVARSLGSTYKHSVCSPVYIEK 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYC 235
              P    EL +H L+     +    ++  WL     + I       L+VN   +I+Q  
Sbjct: 179 YGCPEHPDELHEHQLL----DVSYQRQNKTWLFKKATQEISLTPSKVLKVNHGEAILQLA 234

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYP-EALKNTGKLKAFRNFI 290
           + G+GIA L ++ ++       LV+I+ED  I  S   +  +         +++ F +F+
Sbjct: 235 LAGAGIAQLNEFQIRNALQQKQLVKILEDWNIHASEEFHAVWIGHDKYVPNRVRTFLDFL 294

Query: 291 FLKA 294
              A
Sbjct: 295 VEHA 298


>gi|167844474|ref|ZP_02469982.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           B7210]
          Length = 323

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 61  EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 121 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 180 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 292


>gi|307545492|ref|YP_003897971.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307217516|emb|CBV42786.1| transcriptional regulator, LysR-family [Halomonas elongata DSM
           2581]
          Length = 297

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 136/299 (45%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ + +F  +  SGSFT AA  L + +++ +  I  +E+ +G++L  R  R +  T 
Sbjct: 1   MDRFEAMTLFVRIVESGSFTKAANGLDIPRATATLAIQRMESRLGVRLLERTTRQVRPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   H     +  +LE  +  L+  +  P G LR+       + ++   ++EF   YP 
Sbjct: 61  EGKAFHERCVRLLAELEDAEAALKPVADNPDGVLRVEMHGAQARLIVLPRIQEFHRRYPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ +D+  +  DCA+R   P   SSL+ RKL  +     A+P YL++   P 
Sbjct: 121 LELILTSGDRFVDLVGEGVDCALRSGAP-ADSSLVARKLAEMPQTICASPAYLESAGYPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL KH ++ F           + +    R         + VN   + ++    G G+
Sbjct: 180 HPDELHKHQVVNFFSGNNAVDSTLDVIVD-GRSRAFEVGGWITVNDASTYVESARQGCGM 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             LP + V    +   LV ++ +   P+  ++  YP+  + + +++ F ++I      W
Sbjct: 239 IQLPRFHVAPLIERGELVEVLPEWPKPTLPLHAVYPQRRQLSPRVRVFLDWITSVYAAW 297


>gi|226940013|ref|YP_002795086.1| transcription regulator protein [Laribacter hongkongensis HLHK9]
 gi|226714939|gb|ACO74077.1| Probable transcription regulator protein [Laribacter hongkongensis
           HLHK9]
          Length = 305

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 128/296 (43%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LRVF  +  +GSF+ AAE+L LS +  S+ +  LE ++G +LF R  R ++LTE
Sbjct: 1   MDRLTSLRVFQTIGETGSFSAAAERLGLSAAMASKHVHALEQQLGTRLFQRTTRRVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R  + V  +LE       + SV   G++R++  I  G  +L G L      YP 
Sbjct: 61  AGQDYARRIALVLAQLEEADAAAMQQSVDIRGRVRLSAPISFGMRVLGGWLAGLAARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L ++ +D+  +  D A+R+     +  ++ R L    +   A+P YL+    P 
Sbjct: 121 LEVELELSDRQVDLIDEGFDLALRITTTPLADGIVARPLARFDLLLCASPAYLEQAGTPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  + +   +     D+            P    L  N+   ++Q    G GI
Sbjct: 181 VPADLSQHACLRYS--LYPQGTDWRLRLADGSECRVPVSGPLTANNGDVLVQAACTGMGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              P ++V+       L  + + +      VY  YP       +++     +  + 
Sbjct: 239 IYQPRFLVETHLQQGTLRLLFDSLPVRQAEVYAVYPARRHLPARVRVLVEHLRERL 294


>gi|89899616|ref|YP_522087.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344353|gb|ABD68556.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 312

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 5/291 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  VA  GSF+ AAE++ L +S++SR+++ LE  +G +L  R  R  +LTE 
Sbjct: 15  IDPNDLLIFANVAELGSFSRAAERMGLPKSTVSRRLAALEQRLGERLLLRTTRRQSLTEF 74

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L     +V  ++E      +     PSG+LR++   D    LL   L  F+ LYP I
Sbjct: 75  GLQLLEHARQVVSEVEAVTALSERRQATPSGRLRVSMPSDFANLLLADTLAAFIALYPAI 134

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L L  + +D+  +  D A+R+      +SL  R+L       YAAP YL    EP  
Sbjct: 135 QLELDLSPRRVDLLGEGFDVALRMGNLPDDASLAARRLAVFSFGLYAAPSYLAEHGEPAD 194

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  I       +       LA  ++            N+   +++    G+GIA
Sbjct: 195 PDDLVRHAAIRMLQANGEAASWT--LAQGEQRWQGVPPGRASANAPELLIKLACAGAGIA 252

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +PDY    +     L R++     PS   +  +PE      K + F + +
Sbjct: 253 AVPDYFAAPDVRRGALRRVLPGWCLPSHPAWAVFPERKLMPVKTRVFIDML 303


>gi|16263265|ref|NP_436058.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|307318123|ref|ZP_07597559.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|14523940|gb|AAK65470.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|306896164|gb|EFN26914.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 307

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L  F  VA   SFT AA +L ++QS++S  I  LET +G++L  R  R + +TE G
Sbjct: 5   DFNDLLWFLAVAEERSFTRAAAKLGITQSTLSHTIKRLETRMGLRLLTRTTRSVAVTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +     +      L     KPSG ++I  +    ++L+   L+  LL YPDI+
Sbjct: 65  ERLLRSLAPRISAIRDEIAALMAFRDKPSGTVKITLSDHALESLVWPKLQPVLLEYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  DN   +I  D  D  IRL + ++   +  R      + A A+P YL +   P   
Sbjct: 125 LELSRDNGFRNIVEDGFDAGIRLGESVEKDMIAVRIGPDWRLLAVASPDYLADRPLPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL +HN I            + W    +      R+   L  NS   ++   + G GIA
Sbjct: 185 QELIQHNCINSRQATGGG--HYVWEFEKNGQELRVRVDGQLTFNSSYPMVDAALKGHGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+ +V  +     LV ++E    P    Y  YP    N+   K   + +
Sbjct: 243 YLPEDLVAGHIAAGRLVALLEPWSPPFAGYYIYYPSRHHNSPAFKVIVDAL 293


>gi|53718371|ref|YP_107357.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|52208785|emb|CAH34723.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
          Length = 408

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 85  MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 144

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 145 EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 204

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 205 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 263

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 264 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 321

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 322 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 376


>gi|116050260|ref|YP_790923.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585481|gb|ABJ11496.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 297

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + S   AA  L +S S++ ++++ LE ++G++LF+R  R +TLT +GS     
Sbjct: 9   VFVRVAETRSIVGAARTLGVSASAVGKRVARLEEKLGVRLFHRSTRSITLTAEGSLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T++EL +S   P G+LR++    L   L+   L +F+  YPDI++ L   
Sbjct: 69  SRRILAEIEATELELSQSRETPRGRLRVSLP--LVSGLVLPTLADFMQAYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P+  S L  R+L    +    +P Y      P   ++L +H
Sbjct: 127 DRVVDVVDEGFDVVLRTGQPV-DSRLSMRELGEFQLKLVGSPTYFARHGTPRCPEDLLRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E++  L   D          +  N+  + + + +   GIA LPD+ +
Sbjct: 186 TCLHYRFSNTGRLEEWP-LRRADGEAPPQIPVSMVCNNIETRVCFALRDQGIACLPDFSI 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++      LV +++         +  +P   + + KL+AF +F+  + 
Sbjct: 245 REALREGRLVSVLDAFCERRARFFLLWPSGRQVSPKLRAFIDFVAPRV 292


>gi|157371376|ref|YP_001479365.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323140|gb|ABV42237.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 323

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 136/290 (46%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L VF  V  S SFT   +QL +S S++S+ I+ LE  +  +LF+R  R +TLT +G
Sbjct: 3   SLGSLDVFVRVGESRSFTTTGQQLGISASAVSKAIARLEERLATRLFHRSTRNVTLTPEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        +  ++E  + EL +S+  P GKLR++        L      EF   YPDI+
Sbjct: 63  ALFLERCRRILGEVEAAENELAQSNQMPRGKLRVSLPS--VGLLFMPQFAEFKRQYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +D+  +  D  IR  +P   S L+ RKL +       AP Y + C  P + 
Sbjct: 121 LDIDCSDRLVDVIEEGFDAVIRTGEP-SDSRLMARKLGSYRRIMVGAPRYFEQCGVPNTP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H  + +       ++ +  L+   + +     S +  N+   ++ +   G GIA 
Sbjct: 180 EELMQHRCLRYRFPSSGKVDQWP-LSRGGQILTFDLASSMTANTLEPLVCFAESGLGIAC 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +PD  ++      +LV +++        +   +P +   + KL+ F +++
Sbjct: 239 MPDIAIRQQLEVGSLVSVLDGFNQDHTILRVLWPSSRHLSPKLRVFVDYV 288


>gi|307140210|ref|ZP_07499566.1| putative DNA-binding transcriptional regulator [Escherichia coli
           H736]
 gi|331644230|ref|ZP_08345359.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
 gi|331036524|gb|EGI08750.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
          Length = 316

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 135/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++  
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAA 316


>gi|311106842|ref|YP_003979695.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761531|gb|ADP16980.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           116 [Achromobacter xylosoxidans A8]
          Length = 297

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 123/289 (42%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GS T AA +  +S +  ++ I GLE  +G++L  R  R  +LTE G    
Sbjct: 7   MEVFVAVVELGSLTAAAARHEMSPAMAAKHIKGLEARLGLRLMNRTTRRQSLTEAGQAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +   +     P G LRI +T+  G   L   + E+L  YPD+ + L 
Sbjct: 67  ARCKVILSDIRDAEQGAEAMRSAPRGHLRITSTVTFGSFALAPAIAEYLSEYPDVSVDLA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D A+R+ +P   S L+ RK+    M   AAP YL+    P +  +L 
Sbjct: 127 LSDAVEDVVASRYDLAVRIGEP-ADSGLVARKIGRYQMIICAAPAYLERHGTPETAGDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + F     +     N     +             N+  ++ Q  + G GI L P+ 
Sbjct: 186 RHQCLDFSYWNRRTGWRLN---ADEGSGAAYPAGRFVSNNGQALRQAALAGFGIVLQPEL 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ ++     LV I++     +  +   YP+  K   KL  F  F+  +
Sbjct: 243 LLAEDVRAGRLVPILQSAWPAARPITMLYPKDRKALPKLTTFVEFMVRR 291


>gi|134296861|ref|YP_001120596.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134140018|gb|ABO55761.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 324

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 138/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++       Q  + KPSG LR+     LG+ ++  +L  F   +PD
Sbjct: 61  EGAAYYEHCMKIIAEIAEVDASFQTGNRKPSGVLRVHMPNSLGRRVVLPSLSIFRQRFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YL    EP 
Sbjct: 121 IALDLGLSDRYVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLKRVTCASPDYLARHGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I +L  H+ + F            W+  +D    E R+   + VN   + +   + G G
Sbjct: 180 EIADLADHHAVNF--RASHGARPIPWVFMIDGKPVEVRMAGTVTVNDSDAYVTSGLEGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     ++V     + +LV ++ +       +   YP     + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLRDGSLVEVLPECNPKPKPISIVYPHNRHLSQKVRVFADWIAE 292


>gi|218438460|ref|YP_002376789.1| LysR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218171188|gb|ACK69921.1| transcriptional regulator, LysR family [Cyanothece sp. PCC 7424]
          Length = 294

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ LR F  V + G F  AA Q++LS+S +S+ +  LE ++G++L  R  R +T T 
Sbjct: 1   MDKFESLRAFTEVIKGGGFAAAARQMNLSRSMVSKLVMNLENDLGVQLLLRTTRRVTPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +     +  +LE  Q+ + +   +P G L++   +  G   L   + +F+L YPD
Sbjct: 61  TGSAFYERCVTILAELEEAQLAVSQLHTEPKGLLKVNAPMSFGTLHLAPAIADFMLRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QL L+++ ID   +  D  +R+ KP +++ LI   L+ +     AAP YLK    P 
Sbjct: 121 LQVQLTLEDRFIDPVAEGFDVTVRICKPFKAAGLIVHPLMKVKQVLCAAPSYLKKRGTPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L +H+ + +G            L+  +          L  N+  ++    + G G+
Sbjct: 181 HPHHLREHSCLHYGYFSTGNQWT---LSGAEGDYTIAISGALSSNNGEALKWAGIKGLGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP +IV D     +LV ++ D      +VY  YP     + K++    F+
Sbjct: 238 VFLPTFIVGDELKQGSLVEVLSDYSVGELSVYVVYPTNRHLSLKIQLLTEFL 289


>gi|54308594|ref|YP_129614.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913023|emb|CAG19812.1| Hypothetical transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 300

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 129/295 (43%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V + GSF+ AA    ++ + I + I  LE  +G KL  R  R  +LTE
Sbjct: 1   MDRLKSMQAFVSVVQHGSFSGAAADCSVTPTMIGKHIKFLEVHLGTKLLNRTTRKQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   +   +  LQ    KP G +RI + +  G  +L   + +FL  YP+
Sbjct: 61  AGQIYYLECKRILDDIAEAENSLQTLENKPKGTVRINSPVTFGNIVLAPIVADFLQDYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I   LDN  ID   D  D  IR+ + + SSSLI R++    M   A+  YL  C  P 
Sbjct: 121 INIDFTLDNSLIDPLHDPFDLVIRIGE-LASSSLIAREIARYEMVFCASADYLSECGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ EL +H  + F           N    +D    + + + L  NS  ++    + G+GI
Sbjct: 180 SLDELLRHQCLGFSYGDVHA----NLALLLDTLAFDKQHTRLISNSGQALKVAALKGAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L P  ++ D   +  LV I+         V+  Y +      K +AF +F+   
Sbjct: 236 LLQPRLLLNDELSSGQLVEILSSDTPKPMPVHLLY-KRKALPLKTRAFVDFLLAA 289


>gi|262278718|ref|ZP_06056503.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259069|gb|EEY77802.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 301

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 1   MS-FDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           MS FD +   +L +F  V   GSF+  A    ++ S++S+ I+ LE  +G++L  R  R 
Sbjct: 1   MSYFDINRSGELAIFIRVVELGSFSAVARACDMTPSAVSKLIARLEKRLGVRLLNRSTRQ 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
             LT +G + +    ++  +L+  +  +  +   P G++RI T+     + L   +  F 
Sbjct: 61  FQLTSEGCQFYEQGLQILSELDELEQSVTANHT-PKGRIRIHTSFSYWTHFLLPCISLFN 119

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP I+++  L ++ I++     D AIR   P++SS+L+ R L +   H   +P Y+  
Sbjct: 120 QRYPQIELEAHLSDEVINLVEQRIDVAIRTG-PLKSSNLVARSLGSTQKHYVCSPTYITQ 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYC 235
           C  P    EL +H L+     +    ++  WL   + + I       L+VN   +I+Q  
Sbjct: 179 CGCPQHPDELSEHQLL----DVSYQRQNKTWLFQKENQEITLVPTQVLRVNHGEAILQLA 234

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYP-EALKNTGKLKAFRNFI 290
           +  +GIA L ++ V+   +   L++I+ED  +  S   +  +         +++ F +F+
Sbjct: 235 LADAGIAQLNEFQVRKALEQKQLIKILEDWNVNASEEFHAVWIGHDKYVPKRVRVFLDFL 294

Query: 291 FLKA 294
              A
Sbjct: 295 VEHA 298


>gi|257141237|ref|ZP_05589499.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 305

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 141/291 (48%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF  V R  SF+ AAEQL +S + +S++++ LE  +G +L +R  R + +TE G
Sbjct: 6   NLDDLRVFSAVVRLASFSAAAEQLAVSPAYVSKRVALLEKRLGTRLLHRSTRRVAVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G+++L   L +F   YP + 
Sbjct: 66  ERVFAWAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFSERYPQLD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I    LI ++L T +    A+P YL  C  P  +
Sbjct: 126 VRLDLFDRLVDVAGEGFDLDIRIGDEIAD-HLIAKRLATNYRVLCASPGYLARCGTPRQL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  +   +   +      W  TV       ++   L  N     +Q+ + G GI 
Sbjct: 185 ADLAAHQCLAIKE---RDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   +       +  L R++ D + P+  V+  YP  L  + K++   +F+
Sbjct: 242 LRSIWEAGPLLASGKLERVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 291


>gi|167625190|ref|YP_001675484.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167355212|gb|ABZ77825.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 297

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 132/299 (44%), Gaps = 12/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R+F  V   GSF+ AAE L+++ SS++R I  LE +    L  R  R L LTE G 
Sbjct: 2   LSAMRIFIKVVELGSFSKAAEVLNMAPSSVARNIDNLEQDFNAVLLKRSTRQLLLTEAGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      ++    E+ +  L +  ++P G LRI+     G+  +   L  FL  YP ++I
Sbjct: 62  QFLTGARKLVSDEESLKASLSQQELQPEGVLRISVFEGFGRVKVCPILPGFLAQYPKVKI 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ LDN+ +D+  +  D AIR+  P   SSL  R L+T      A+P YL     P    
Sbjct: 122 EIDLDNQLVDLHSENIDIAIRIGSP-ADSSLHARMLMTNQTSLCASPTYLAQFGSPKKPD 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN +       +    F+      +    P    L       I++  +   GI LL
Sbjct: 181 DLLQHNCLLLDRDRQRTYWHFH---KAKQYKKVPVQGNLTSRGGTPILEAAIHHGGIVLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVIT-----PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +++ D   + +LVR + +         S  +Y  Y         ++AF +++    +
Sbjct: 238 SSWMMDDLIQDGSLVRCLPEWTPSLSEQSSGDIYALYSGGKHMRPVIRAFIDYLVKALK 296


>gi|221068730|ref|ZP_03544835.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713753|gb|EED69121.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 305

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 84/295 (28%), Positives = 135/295 (45%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L+VF+ +A+ GSF  A   L LS ++IS+ I+ LE  VG +L  R  R + LTE
Sbjct: 1   MDRLTALQVFHRIAQRGSFAEAGRSLGLSPAAISKNIAELEAHVGTRLIQRTTRRMALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G       +     L      L      PSG L+++  +      +   L  FL  +P+
Sbjct: 61  EGRLYLEHVTRALDALADADSALCPFKAAPSGLLKVSAPMTFTLTQISCALPAFLERHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L LD++ +DI  +  D AIR    ++ SSLI R L ++     AAP Y +    P 
Sbjct: 121 LQLDLHLDDRRVDIVREGFDLAIRGSDRLEDSSLIARPLTSMPHVLCAAPGYFEKRGRPH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L     I F       + +F     ++R     R S   V+S L++      G G+
Sbjct: 181 TPADLSGLEHIRFSLSGHADVWEFEQGGRMERVAVNARYS---VSSSLAVRDALRAGFGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +L+P   V+++     L   +ED  T    +Y  YP     T KL+A  +F+  +
Sbjct: 238 SLIPLPYVEEDLRTGRLQAALEDWSTVQTALYAIYPSRQHMTPKLRALLDFLVAQ 292


>gi|94312501|ref|YP_585711.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356353|gb|ABF10442.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 310

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  +   GSF  AA+QL +S + ++R ++ LE+ +G +L  R  R L+LT+
Sbjct: 1   MDRLQSMRVFAKLVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +  S++   +E  +  +   S   SG LR+ T +  G +LL   L+ F  LYPD
Sbjct: 61  AGETYLQRCSQILEDVEEAESIVAARSQSLSGTLRLVTPVMFGLHLLPQILERFQQLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ IDI  +  D  + L      S L+ R L++  +   A+P YL+      
Sbjct: 121 VVFDVQLSDRMIDIVEEGRDVGVMLSDLGLGSHLVARPLISAEVILCASPGYLREHPPLR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I     +P    ++  L+  +  +  P    L  ++     Q  +   GI
Sbjct: 181 NAHDLSNHRAIAM--RLPNAEHEWT-LSGPEGEVTVPIRPGLLCSNAELAHQAALTNMGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+L  Y+ +   +   L  I+     P   V   YP       K++AF +F+  +++ 
Sbjct: 238 AMLSSYLARPNIEAGRLTHILPQYQLPRRDVSVVYPSRKFLPTKVRAFIDFLLEESQQ 295


>gi|330816209|ref|YP_004359914.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327368602|gb|AEA59958.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 332

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 130/299 (43%), Gaps = 7/299 (2%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D       F  +A+ GS + AA  + L+  + ++++  LE  +G +L  R  R ++L
Sbjct: 1   MKTDITSDFAFFVQLAKLGSLSGAARSMGLTPPAATKRLGILEARLGARLVNRTTRSISL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G    R  + +  ++   +  +  +   P G+LR+  T+  G+  +   + EF   Y
Sbjct: 61  TPEGETYARYAARILEQVREMEDAIAGTPADPHGRLRVNATLGFGRTTIAPLVSEFAKRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + +Q ++ +K +D+     D AIR  + +    L  R+L++      A+P YL+    
Sbjct: 121 PHVDVQFVVTDKPVDLVEGGFDMAIRFGE-LPDGRLRARRLMSNRRFLCASPKYLERAGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PL  ++L  H  I                   D          L  N    ++++ + G 
Sbjct: 180 PLRKEDLVAHRCIIHSQNDDAHGVWN--FIQDDHLEALKVNGSLSSNDGDIVLRWALDGH 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI +  ++ +     +  L  ++ +V+ PS  +Y  YP   K + + +AF +F+    +
Sbjct: 238 GILIRSEWDLAKYLQSGRLRLVLPEVVLPSADLYVYYPGQRKQSARSRAFIDFLVDHFQ 296


>gi|320324417|gb|EFW80496.1| LysR protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320328462|gb|EFW84464.1| LysR protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 311

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 142/297 (47%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L +++  P G+LR+         LL   L  F   YPD
Sbjct: 61  DGAAYYERVVRLLADMDDAETSLSDATSLPRGRLRVDVPSPFASMLLMPALPGFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI + + ++ +D+  +  DC +R    I   SLI R++  + +  YAAP+YL     P+
Sbjct: 121 IQIDMGVSDRIVDMIGENVDCVVR-GGEITDQSLIARRVGDLQLGVYAAPYYLTRMGTPV 179

Query: 182 SIQELDK--HNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLG 238
             +EL+   H ++ +  L  +  +   +    D   +       L V+   + +   + G
Sbjct: 180 HPRELEDSAHRVVGY--LWARTSKALPYAMHRDGEKVHVQGRYALAVDDGNAYIAAGLAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  LPDY+ + +    +L+ + +D    S  +Y  +P     + K++ F ++I  
Sbjct: 238 MGILWLPDYMARQHQVRGDLIPLFKDWQLDSMPMYVAFPPNRHISIKVRVFIDWITE 294


>gi|160897459|ref|YP_001563041.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363043|gb|ABX34656.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 297

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 142/296 (47%), Gaps = 13/296 (4%)

Query: 1   MSFDWDK---LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D D    L  F   A   SF  A   L +S S++ + ++ LE ++G++LF R  R +
Sbjct: 1   MAIDMDSFSGLESFVRAADLLSFAEAGRALGISASAVGKNVARLEQQLGLRLFQRTTRQV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT++G+  H     +  +L   +  +Q ++  P G+LR++    +G   L   L EF +
Sbjct: 61  RLTQEGALFHERCRRILDELHDARATMQAAAEAPRGRLRVSLP-TIGYRFLLPVLPEFQV 119

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP++ + L  ++  +D+     D  IR  + +  S L+ R+L         +P YL   
Sbjct: 120 LYPEVDLDLDFNDHLVDVVEAGLDVVIRSGE-LADSRLVARRLGPFRFILAGSPDYLAAR 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P S  EL +H+ + +  L    +E++        P   P  + L  N+  +++   V 
Sbjct: 179 GIPQSPAELAQHSCLRYRFLSSGKLEEW---VLPGMPPHLP--AALVCNNMEAMLGAAVA 233

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+A +PD++ +D      L R++ + +T +      +  + + + K++AF +F+
Sbjct: 234 GMGLAYMPDFLARDALGRGELQRVLAEDLTHTGQFSALWASSRQLSPKVRAFVDFV 289


>gi|270263110|ref|ZP_06191380.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042798|gb|EFA15892.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 301

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 134/295 (45%), Gaps = 6/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + VF  V   GSF+  AE++ LS + I   I  LE  +GI+L  R  R  +LTE GS
Sbjct: 4   LESMSVFVRVVERGSFSAVAEEMRLSGTMIGLHIKALEQHLGIRLLNRTTRRQSLTEFGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++   +E T+         P G+L++A  +  G + L      FL  +P++ +
Sbjct: 64  AYYQRCRQILADIEDTESIALALHQSPRGRLKVACPVSFGVHALSPVTARFLTAWPEMTL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L +K +D++ +  D  I++ +    +SL+   L        A+P YL +   P+  Q
Sbjct: 124 DLVLSDKMLDMAEEGVDVMIKVGELEHVNSLVAHPLAAYQSVICASPDYLAHSGTPVHPQ 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  + F   +         L    + I  P    + VN+  ++    + G GI + 
Sbjct: 184 DLTEHRCLGFAHPLAGSEWT---LQQGGKLIKVPVNIVMAVNNGEALRSAALNGLGILMQ 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P+ ++ ++     L+ ++ +    +  V+       +   K++ + +F+    ++
Sbjct: 241 PEVLLAEDLRQGRLIPLLPEYQPLARPVHVLTFVDRQQLPKIRLYVDFLLQHFKE 295


>gi|254450985|ref|ZP_05064422.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198265391|gb|EDY89661.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 298

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 139/291 (47%), Gaps = 7/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +  SGSF  AA +L +S  +++R ++ LE  +G++L  R  R L+LT+ G++  
Sbjct: 1   MEVFAAINDSGSFVQAANRLRMSPPAVTRAMNALEDRLGVQLLTRSTRQLSLTDPGTRFL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +  ++E  + +         G L ++ ++   + +    ++EFL  +P I + L+
Sbjct: 61  DSSRRLLSEIEAAEKQAVGEIGVAQGHLTVSASMTFSRMIAAPVVREFLAAHPRISVSLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  ++  +  D A+R+   +  S+L+ ++L  +     A+P YL+ C  P    +L 
Sbjct: 121 ALDRVANLVEEGIDVAVRIGG-LPDSNLMAKRLGNVRRLFVASPAYLERCGVPTEPSDLK 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H++I F   +      +   +        PR   L+VN   + +     G GI L   Y
Sbjct: 180 THSIIGFTGTMSSHDWHYKTESQRGHVQLHPR---LEVNDASTALTAASDGEGITLALSY 236

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +V +   N  LV ++ + + P+  ++  YP++     K++AF  F   + R
Sbjct: 237 MVAEQVRNGELVPVLSEFLPPAEPIHLVYPQSKLVAPKVRAFLEFSADRLR 287


>gi|116695836|ref|YP_841412.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530335|emb|CAJ96682.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 334

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 130/292 (44%), Gaps = 7/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V R+GSF  AA +  ++  + S+ +  LE  +G++L +R  R L+LTE+G++L 
Sbjct: 32  LTLFLGVVRAGSFHRAAVEAGVTPQAASKAVRTLEDHLGVRLLHRTTRKLSLTEEGARLF 91

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            + +    +L+    +++ S     G +R+     LG  +L   ++ F   YP I   ++
Sbjct: 92  ELAAPGMRQLDEALEQVRSSKSDNDGLIRLTAPPSLGSRVLVPLVRGFREQYPRITFDVV 151

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D   R+       +L+ R+L  + +   AAP YL    EP ++ +L 
Sbjct: 152 LSDLFTDLVEAKIDVGFRVGTS-PGQNLVARRLCDLPLVICAAPDYLARHGEPATLDDLL 210

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
           +H    F    P       W   VD  +    +  +   N   + ++    G GI  LP 
Sbjct: 211 QHQCTGFRR--PATGRMVPWELQVDGDLIYQEVPAVASFNDVETEVEAVRAGMGIGQLPA 268

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           Y++  +     L  I+    + +  +Y  YP   +   +++ F +F+    R
Sbjct: 269 YMIHADLVSGRLKAILPGYSSSNVGMYMYYPHRSQMPVRVRRFIDFVVEAGR 320


>gi|17548049|ref|NP_521451.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430355|emb|CAD17120.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 298

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 126/296 (42%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +GSFT AA QL +S   + + +  LET +G +L  R  R  +LT+
Sbjct: 1   MDKLRSMETFVAVVDAGSFTEAAMQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  ++   +  ++    +PSG LR++     G  ++      F   +P 
Sbjct: 61  AGRVFYEDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLTATFQQAHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+ +D++ +  D A+R+   +  + L+ + L    M   A+P YL     P 
Sbjct: 121 VRVELDLSNRMVDLADEGFDLAVRIGA-LGDADLVAKPLCAYRMVISASPDYLARHGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  ++    +     +   L+  D             N    +    + G+G+
Sbjct: 180 TPADLPAHRCLSH---MVWNSRNAWQLSGWDGTTSWRDDPAFSCNDGHGLRMAAIAGAGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L P+ +V ++     LVR+++        ++  Y +  +   KL AF   +  + 
Sbjct: 237 LLQPEVLVAEDLASGRLVRVLQTYAPQPRPIHLVYRQDRRPLPKLTAFTAHLLEQV 292


>gi|253771648|ref|YP_003034479.1| LysR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163443|ref|YP_003046551.1| putative DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|242379040|emb|CAQ33839.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|253322692|gb|ACT27294.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975344|gb|ACT41015.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253979500|gb|ACT45170.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
          Length = 323

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|167917720|ref|ZP_02504811.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           BCC215]
          Length = 324

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 61  EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 121 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 180 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 292


>gi|158424294|ref|YP_001525586.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158331183|dbj|BAF88668.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 305

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 144/295 (48%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  SGSFT AA+ L L ++++S+QI  LET +  +L +R  R +T+T 
Sbjct: 1   MDQLAAMRAFVRVVESGSFTRAADILALPKATLSKQIQQLETHLSTRLLHRTTRQVTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++     L  +   P G+LRI  +  L   +L   L +F   YP+
Sbjct: 61  DGAAYYERALAILTDVDELDGSLSTNLTCPRGRLRIDISPSLATGILMPALPDFFSRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I +   ++ +D+  +  DC IR+ + I++SSLI R++  ++  A AAP Y+    E  
Sbjct: 121 IHIDIGCTDRPVDLVGENVDCVIRVGE-IRNSSLIARRIGELNFAAAAAPSYIARHGEIQ 179

Query: 182 SIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++ +  H ++ +          F+++   +      R S   +N   + +   + G G
Sbjct: 180 HPKDFEKDHVMVRYFSATTAHYYAFDFIRDAEEVEVLGRYSV-ALNDGNAYVSAGLAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + L P ++++++     LVR++ +  T    ++  YP +   + +L+ F +++  
Sbjct: 239 VILCPIFMMQEHLDAGTLVRVLPEWHTQPMPIHVVYPPSRHISNRLRVFVDWVAE 293


>gi|86135897|ref|ZP_01054476.1| putative transcription regulator protein [Roseobacter sp. MED193]
 gi|85826771|gb|EAQ46967.1| putative transcription regulator protein [Roseobacter sp. MED193]
          Length = 302

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R F  VA   SFT  A Q+ +S    S+ ++ LE  +G +LF+R  R +TLT+
Sbjct: 1   MDTLDCMRTFVAVAAQHSFTAGARQIGISTKLASKYVARLEERLGAQLFHRTTRSVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  ++E  +  +QE   + +G +R+      G   L   +  F   +P 
Sbjct: 61  TGQAYLERCLPVLDQIEEMEGVIQERQSELAGAIRLTAPTGFGSRELVQAVTPFQQEHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+++L +    I  +  D AIR  K +Q S+L+ RKL  + +   AAP YL+   EP 
Sbjct: 121 VQIEMLLSDYHAPIVEEGIDLAIRFGK-LQDSTLVARKLCDMRLVVVAAPDYLERFGEPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L  HN +         +  F       +    P     + NS  ++    V G GI
Sbjct: 180 HPKALATHNCLLLQSSAQPDIWRFR---EEGQVTSVPVSGSFRANSPRAVAHMAVGGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A  P YIVK   +   L  +  D       +Y  YP +   T +++A    +
Sbjct: 237 ARCPYYIVKPLIEQGQLQFLFADREDAPLPLYVVYPPSRHLTARIRALIEHL 288


>gi|167579261|ref|ZP_02372135.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 305

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 141/291 (48%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF  V R  SF+ AAEQL +S + +S++++ LE  +G +L +R  R + +TE G
Sbjct: 6   NLDDLRVFSAVVRLASFSAAAEQLAVSPAYVSKRVALLEKRLGTRLLHRSTRRVAVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G+++L   L +F   YP + 
Sbjct: 66  ERVFAWAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFSERYPQLD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I    LI ++L T +    A+P YL  C  P  +
Sbjct: 126 VRLDLFDRLVDVAGEGFDLDIRIGDEIAD-RLIAKRLATNYRVLCASPGYLARCGTPRQL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  +   +   +      W  TV       ++   L  N     +Q+ + G GI 
Sbjct: 185 ADLAAHQCLAIKE---RDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   +       +  L R++ D + P+  V+  YP  L  + K++   +F+
Sbjct: 242 LRSIWEAGPLLASGKLERVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 291


>gi|163749091|ref|ZP_02156341.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161331161|gb|EDQ02050.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 303

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 143/289 (49%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +  + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGIPKSTISRKVARLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    +  ++E  +  ++ ++   SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCISIRDEIEAAKATIENTNNHVSGSLRIAIPVSFSQELIANLCSSFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + ++ +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDSEVSLVGEGYDIAIKYG-PLQSSDLVARLLFERKPILVASPGYLKANGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL  H+ I  G      +     L   +R         ++VNS + + +      GIA+
Sbjct: 182 QELANHHGILLGTSRSAPIWP---LGKGNRKTMVSFKRKVRVNSAVMVKKLVQDDFGIAM 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L + + K+   + +LV I+++    +F +Y  Y    +    +  F +F
Sbjct: 239 LSNSVCKNELASGSLVPILQEWPIEAFKIYGVYSSRRQLATNISVFLDF 287


>gi|71734735|ref|YP_274406.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555288|gb|AAZ34499.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320328788|gb|EFW84787.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 303

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L +R  R L LT
Sbjct: 1   MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRKVQQLEIQLGTRLLHRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H         L     +L     +P G+LRIA   D         + +FL  YP
Sbjct: 61  QAGEDFHERCVGAVDGLMDAAEQLVSGREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDTMVASPAYIAAHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+Q L  H  ++     P     +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGPDAKMHEVQMASRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K RD
Sbjct: 238 GIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLRD 297


>gi|157157897|ref|YP_001464991.1| LysR family transcriptional regulator [Escherichia coli E24377A]
 gi|157079927|gb|ABV19635.1| transcriptional regulator, LysR family [Escherichia coli E24377A]
          Length = 299

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 61  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 297


>gi|330987379|gb|EGH85482.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 303

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L  R  R L LT
Sbjct: 1   MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H         L     +L     +P G+LRIA   D         + +FL  YP
Sbjct: 61  QAGEDFHERCVGAVDGLMDAAEQLVSGREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A+R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIALR-GGPLQDSGYVGRQLIEEGHDSMVASPAYIAAHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+Q L  H  ++     P     +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGPDAKMHEVQMASRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K RD
Sbjct: 238 GIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLRD 297


>gi|330971262|gb|EGH71328.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 305

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 IRLEIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +Q L +H +I +            ++A     +       + VNS    +  C  G G+
Sbjct: 180 DLQALAQHQVIEYFSTSTGKRYGLEFMAD-GMDVEHASACSIAVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V     +  LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVAAQLRSGGLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWLVE 292


>gi|28869938|ref|NP_792557.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853183|gb|AAO56252.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 305

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFAKAAESLHIPRASVTILIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFTRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 VRLEIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQITCASREYLQQHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L  H +I +            ++     P      S + VNS    +  C  G G+
Sbjct: 180 QLEDLAHHQVIEYFSASTSKRYGLEFVGEGGAPDHGLACS-ISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y +     +  LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHIAGQLRSGTLVEVLRRHRPPPLALTALYPPHRQLSRRVRVFVDWLVE 292


>gi|187923033|ref|YP_001894675.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714227|gb|ACD15451.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 305

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 145/299 (48%), Gaps = 8/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE
Sbjct: 1   MDRFEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  ++   +  L      P+G +R+ T+  L + LL   L +F   YP+
Sbjct: 61  DGALFYERCVRILAEVTDAESSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L +++ID+  D  DC IR+  P + SSL+ R++    +   A+P YL+   EP 
Sbjct: 121 IDVRLGLADRNIDLIQDGVDCVIRMGTP-EESSLVARRIGQARIVTCASPAYLEKYGEPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +++EL +H  + +  +  +    F +   VD  I +  + S L VN     +    LG G
Sbjct: 180 TLEELSEHRAVNY--VSARTGRTFPFEYQVDGEIAKVSLKSVLAVNDGSVYIGAAALGHG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I     ++V D      L  I+    +P   +   Y      + +L+AF  ++   AR+
Sbjct: 238 IIQPSRFMVADLIAQGALKEILTGYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARN 296


>gi|304397953|ref|ZP_07379829.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304354664|gb|EFM19035.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 301

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 133/286 (46%), Gaps = 4/286 (1%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V  +GSF+ AA +L  S S  S+ +S LE ++G++L  R  R L+ T+ G   + 
Sbjct: 8   RMFVTVLETGSFSAAALRLGTSSSQASKLVSKLEQQLGVQLLKRSTRALSPTDVGRSYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    E     ++ES+  P+G+L+I+     G  +L   L  F   YP I++ +  
Sbjct: 68  RVKNLLDAFEALDASVRESATTPTGRLKISAPGSFGTAVLSQVLVAFARRYPLIELDVSF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ++I  +  D AIR+   +  SSL+ RKL  +H+   A+P YL+    P   + + +
Sbjct: 128 SDRAVNIVDEGFDMAIRIG-TLSDSSLVARKLSEVHVRIAASPVYLEQFGTPQHWRNMAQ 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  I   +        F         +  P    L+  +  + +Q  + G GIA LP +I
Sbjct: 187 HQCIIDTNFRDPRHWPFTSGDGSSEIVTVPVRGRLRFANTEACLQAAIAGLGIARLPGFI 246

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                    +VR++E+  TP   ++  YP A     + +   +F+ 
Sbjct: 247 AAPALQRGEIVRLLENFETPPLGLFAVYPPARHLPHRARLLIDFLV 292


>gi|254500724|ref|ZP_05112875.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222436795|gb|EEE43474.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 314

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 135/295 (45%), Gaps = 13/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS +   + +F  V  +GS + A  +++LS + +S++I  LE ++G +L  R  R + +T
Sbjct: 1   MS-NLTDMEIFARVVSAGSMSAAGREMNLSPAVVSKRIRRLEEKLGSRLLQRTTRQIAMT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +   +E  +  +   S K  G L++A     G+  +  ++ +FL   P
Sbjct: 60  EAGQGFYERVIAILASVEEAESFVSRGSAKARGHLKVAVPTSFGRLHIAPHVGKFLANNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I L L +  +DI  +  D AIR+ + +  SSL+ R+L  IH    A+P Y++    P
Sbjct: 120 DLSINLDLSDDFVDIVGEGYDLAIRIAE-LSDSSLVARRLAPIHRILCASPEYVEKYGTP 178

Query: 181 LSIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            SI + L  H  +   +  P  +   N + TV         S ++ NS   + +  + G 
Sbjct: 179 QSIDDLLANHVTLAAANQDPWRLAGPNGIETVRTQ------SPVKTNSSEVVRECLLSGV 232

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           GIAL   + +        L  ++ +        +Y  YP       K++ F +F+
Sbjct: 233 GIALRSTWDIGPELREGKLQILLPEYRASKDVGLYAVYPSRQFLPAKVRVFIDFL 287


>gi|170736901|ref|YP_001778161.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819089|gb|ACA93671.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 307

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 141/292 (48%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF +V R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R +T+T+ G
Sbjct: 6   NLDDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRVAMLEAQLGTRLLHRSTRRMTVTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LR++++   G++++   L +F   YP + 
Sbjct: 66  ERVFARAEKILDDVDHLVEDVSTTRTVPRGTLRMSSSFGFGRHVVAPALLDFSARYPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I    LI R+L T H    A+P YL     P S+
Sbjct: 126 VRLDLFDRLVDVAGEGYDLDVRIGDDIAD-HLIARRLATNHRVLCASPDYLARRGTPRSL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ +   +           L      +       L  N     +Q+ + G GI L
Sbjct: 185 ADLTSHDCLAIKERDHPFGVWR--LNVRGETVTVKVGGALSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              +      +   L R++ +   P+  ++  YPE +  + K++   +F+  
Sbjct: 243 RSIWEAAPLIERGELCRVLPEATQPA-NIWAVYPERVAASAKVRVCVDFLVE 293


>gi|91223248|ref|ZP_01258514.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|254228760|ref|ZP_04922183.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262396520|ref|YP_003288373.1| transcriptional regulator LysR family [Vibrio sp. Ex25]
 gi|269965374|ref|ZP_06179494.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91192061|gb|EAS78324.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|151938707|gb|EDN57542.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262340114|gb|ACY53908.1| transcriptional regulator LysR family [Vibrio sp. Ex25]
 gi|269830020|gb|EEZ84249.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 299

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 126/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE  +L+ S +S++++ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVIELGSFSKVAEANNLTNSVVSKRMARLEEEIGAQLLYRTTRKLTLTEAGKV 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHSAKNVKQATQEAMDAVAGFGENVSGHIKMSVPCISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+  D  D  IR    +  SSLI R ++       A+P Y+    +P+   +
Sbjct: 124 MSLDNRFVDLVADGYDLVIRTGY-LADSSLIARHILDSQWVVCASPSYIAKNGKPIEPID 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + +        +        D         C   ++  ++ +  + G GIA +P
Sbjct: 183 LTTHNCLQYAYQTTGATDWE--FKGEDGNYIVKVSGCFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV I  +++     +Y  YP   +   K+K     I  +
Sbjct: 241 RCLVYHDIRNGQLVDIFPELVGKKLGIYAVYPFTRQPPNKVKLLIEHIRDR 291


>gi|107022523|ref|YP_620850.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116689472|ref|YP_835095.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170732778|ref|YP_001764725.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|206559824|ref|YP_002230588.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|105892712|gb|ABF75877.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116647561|gb|ABK08202.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169816020|gb|ACA90603.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
 gi|198035865|emb|CAR51756.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 313

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 137/297 (46%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+++   P 
Sbjct: 121 VHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVESHGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSG 240
              +L +H  +    + P    D   LA  +     P      +VN   ++      G G
Sbjct: 181 RPADLAQHVCLGM--VAPGFHFDEWALAGPNGDEVVPITAPPFRVNVAEALAVAVREGMG 238

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  LP Y       + ++VR+M +  +    +Y  YP       K++ + +F+  + 
Sbjct: 239 VGGLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLREEL 295


>gi|116250636|ref|YP_766474.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255284|emb|CAK06359.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 280

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 69/277 (24%), Positives = 121/277 (43%), Gaps = 11/277 (3%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79
            + A   L  S + +S++I  LE  +G +L  R  R ++LTE G   +     +   LE 
Sbjct: 1   MSLAGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFYDRVLGILAGLEE 60

Query: 80  TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139
            +  +   S +  G L+I+     G+  +  +LK+F+  +P++ I L+L ++  DI    
Sbjct: 61  AEFYISGRSAQMHGTLKISAPTSFGRMHIAPHLKDFMEAHPELAINLVLTDEFSDIVGGG 120

Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIP 199
            D AIR+ + +  SSL+ R+L  +     A+P YL    EP  I EL  H  +      P
Sbjct: 121 FDLAIRIAE-LTDSSLVARRLAPVRRLLCASPDYLAAHGEPKHIDELKHHRCL------P 173

Query: 200 KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLV 256
               D   L   D  +       L  NS   I +  + G GIAL   + + +   +  LV
Sbjct: 174 AHNNDTWRLKGPDGALSLRPEGLLITNSSEVIREAVIAGLGIALRSTWDIGEELKSGRLV 233

Query: 257 RIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++    +     +   YP       K++ F +++  
Sbjct: 234 QVLPAYESSHNVALSAVYPSRQFLPAKVRLFIDYLAE 270


>gi|50085788|ref|YP_047298.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531764|emb|CAG69476.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 295

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M F  + + +F  V +  SF  AA++L++  S++SR+I  LE E+G++L +R  R + LT
Sbjct: 1   MEF-LNDMALFVEVCKVMSFRKAADKLNMPSSTLSRRIGHLEKEIGLRLLHRTTRKVELT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +  +      +L E   KPSG LRI+  +D G  +L   L EF  LYP
Sbjct: 60  EAGQVYFERCKPIVSEALLAHEQLGEMLSKPSGLLRISLPVDFGVMILAPLLTEFAELYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I  ++ L  K +D+     D AIR+  P   S+LI  KL+      YA+  YL+    P
Sbjct: 120 EINFEIDLTPKLVDLVKQNIDVAIRMGNP-PDSNLIGHKLMQFRGQLYASADYLEKNGHP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  ++F + +   +   N   TVD  I         +NS   + +  +LG G
Sbjct: 179 NHPSDLVHHQCLSFPNNLLWKLNHKN--ETVDVKI----TGRFMLNSVGMMRKLSILGQG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   P  IV D+     LV I+ +        Y    E      K++ F +F+  K 
Sbjct: 233 IIFTPRAIVYDDINKGLLVPILTEWQGDFLPAYAMT-ETRLLPAKVRVFIDFLREKL 288


>gi|148546441|ref|YP_001266543.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148510499|gb|ABQ77359.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 298

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 127/301 (42%), Gaps = 8/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V    SF  AA +L +S ++++R +S LE ++G+KL  R  R + LTE
Sbjct: 1   MDQIHLMKVFVAVGELESFAAAARRLDISAAAVTRAVSALEEQLGVKLLLRTTRSVRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +    T  +   +          +  P G L +   I  G+  +   +  +L  YP+
Sbjct: 61  AGGRYLEDTRHILASIHEANEAAAGINATPRGDLAVTAPILFGKKFVMPCIVRYLQQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +     ++ +++  +  D A+R+  P+  S L   ++  +     A+P YL     P 
Sbjct: 121 VDVSAFFLDRVVNMVEEGMDVAVRIG-PLPDSGLKALRVGRVRRMLCASPDYLARHGVPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H +I   +L P+    F      D P        L V S    +     G GI
Sbjct: 180 HPSDLAGHAIIGTTNLSPRAGWRFG---VTDEPTLVRMKPRLTVTSNDGAIAAASGGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A L  Y V D   +  L  ++ +     + ++  + E+   + K++AF + +    RD +
Sbjct: 237 ARLLSYQVADELASGQLQVLLAEYEEAPWPIHVLHRESKYGSAKVRAFIDMLAQDLRDQQ 296

Query: 299 F 299
            
Sbjct: 297 L 297


>gi|126455278|ref|YP_001065164.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|242314710|ref|ZP_04813726.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|126228920|gb|ABN92460.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|242137949|gb|EES24351.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 294

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 135/287 (47%), Gaps = 7/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++         +   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLP--ALSAPVLPVLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +           EP  S +  N+  + + + + G G+A +PD+ V
Sbjct: 186 TCLLYRFPTTGKLERWPLRPAPGDADVEPPQS-MICNNVETRVCFAIRGRGLACVPDFAV 244

Query: 250 KDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +D      L   ++  I    T +  +P     + KL+AF +FI  +
Sbjct: 245 RDELASARLRTALDAYIERPQTFHVLWPSGRHASPKLRAFVDFIVGR 291


>gi|295675831|ref|YP_003604355.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295435674|gb|ADG14844.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 306

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 144/298 (48%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE
Sbjct: 1   MDRFEAMEIFTRVVEAKSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +   +  L      P+G +R+ T+  L ++LL   L +F   YP 
Sbjct: 61  DGASFYERCVRILADVADAESSLSNKRENPAGTIRVDTSGTLARSLLLPALDDFYEQYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L +++ID+  D  DC IR+  P + SSL+ +++    +   A+P YL+    P+
Sbjct: 121 IDVRLGLADRNIDLIQDGVDCVIRMGTP-EESSLVAKRIGLARIVTCASPAYLQKFGTPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ +L +H  + +  +  +    F +   VD  I    + S L VN     +   VLG G
Sbjct: 180 TLADLGEHRAVNY--VSARSGRTFPFEFEVDGEIERVAMDSTLAVNDGSVYITAGVLGHG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I     ++V    +   L  I+ +  +P   +   Y      + +L+AF +++   AR
Sbjct: 238 IIQPSRFMVAELIEQGALTEILGNYTSPGTPLSILYAHRRNLSSRLRAFIDWVVELAR 295


>gi|54303517|ref|YP_133510.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46916947|emb|CAG23710.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 306

 Score =  251 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 145/291 (49%), Gaps = 15/291 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L +F  V    SFT AA +L +++S+ISR+I+ LE  +G +L  R  R L LT++
Sbjct: 10  FDLNTLEMFARVVACHSFTQAAAELEITKSTISRKIAELEKHLGTRLLTRSTRTLVLTKE 69

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++  + +   +E T++E+  S     G L I   +++G  LL   +KEF+ L+P +
Sbjct: 70  GKTFYQSCAHIIELIEQTELEVMASHDLIRGPLNIVMPVEVGNGLLGRCMKEFMKLHPHV 129

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L N+ +D+  +  D  +++ + +  SSLI R          A+P YL     P+ 
Sbjct: 130 TIHLELSNRKVDLIAEGIDLKVQVGE-LDESSLIARTFHYSTRILVASPEYLAEYGTPII 188

Query: 183 IQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +L   H  I     I           T D+ +         VN+  S+++ C+ G GI
Sbjct: 189 LGDLKAPHQQIKNSSSIR----------TADKNVLAGLPYRFNVNTINSLLEACLDGFGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +P++I K++     LV ++ DV +    V F YPE    + +L+ F +F
Sbjct: 239 TFMPEFICKEHIVSGRLVHVLPDVYSAQIPVSFVYPERKLISKRLREFIDF 289


>gi|45440817|ref|NP_992356.1| transcriptional regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51595551|ref|YP_069742.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 32953]
 gi|108807083|ref|YP_650999.1| LysR family transcriptional regulator [Yersinia pestis Antiqua]
 gi|108812982|ref|YP_648749.1| LysR family transcriptional regulator [Yersinia pestis Nepal516]
 gi|153950777|ref|YP_001401781.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|166211613|ref|ZP_02237648.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400255|ref|ZP_02305768.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167424115|ref|ZP_02315868.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170025127|ref|YP_001721632.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|186894607|ref|YP_001871719.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|229894059|ref|ZP_04509245.1| Transcriptional regulator [Yersinia pestis Pestoides A]
 gi|229903420|ref|ZP_04518533.1| Transcriptional regulator [Yersinia pestis Nepal516]
 gi|294503179|ref|YP_003567241.1| Transcriptional regulator [Yersinia pestis Z176003]
 gi|16611834|gb|AAL27377.1|AF426171_8 putative transcriptional regulator [Yersinia pestis]
 gi|45435675|gb|AAS61233.1| Transcriptional regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588833|emb|CAH20447.1| putative transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776630|gb|ABG19149.1| transcriptional regulator, LysR family [Yersinia pestis Nepal516]
 gi|108778996|gb|ABG13054.1| putative transcriptional regulator, LysR family [Yersinia pestis
           Antiqua]
 gi|152962272|gb|ABS49733.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|166207384|gb|EDR51864.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167050204|gb|EDR61612.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167056964|gb|EDR66727.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169751661|gb|ACA69179.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186697633|gb|ACC88262.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679190|gb|EEO75293.1| Transcriptional regulator [Yersinia pestis Nepal516]
 gi|229703944|gb|EEO90957.1| Transcriptional regulator [Yersinia pestis Pestoides A]
 gi|262361216|gb|ACY57937.1| Transcriptional regulator [Yersinia pestis D106004]
 gi|294353638|gb|ADE63979.1| Transcriptional regulator [Yersinia pestis Z176003]
 gi|320014316|gb|ADV97887.1| Transcriptional regulator [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 303

 Score =  251 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 7/293 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A+ GSFT AAE+L L++S++ + +S LE  +G+KLF R  R L+LT  G +  
Sbjct: 10  ITAFVTTAQQGSFTAAAEKLGLTKSAVGKSVSRLEDRLGLKLFQRSTRRLSLTPDGERFL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE  + EL     +PSG+LR+      G+  +   L + + LYP++ + + 
Sbjct: 70  ASCQSAIDILEQAEAELMSHICQPSGRLRVDLPAAFGRQRILPILLDIIRLYPELALTVT 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              + +D+  +  D  IR+ +   SS L+ R+L T  +   A+P YL    EP+S  EL 
Sbjct: 130 FSERFVDLIEEGIDLVIRIGELADSSGLVARRLTTQKLVICASPDYLLYHGEPVSTDELS 189

Query: 188 KHNL-ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H   + F    P           + R    P     +     +++   + G G++ LP 
Sbjct: 190 QHQCVVGFRRSQPISWLLKESDGQISRFAPPP---THEFGDGDAMLAATLAGGGLSQLPL 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++V    ++  L  ++         +   +P+  +   K++   + +   A D
Sbjct: 247 WLVGKYLESGELREVLPGHSGGEMPISALWPKNRQLLPKIRYVVDTLVKAAED 299


>gi|190892415|ref|YP_001978957.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697694|gb|ACE91779.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 300

 Score =  251 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 140/293 (47%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VAR GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 3   DLNDIAVFVKVARYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    + +FL  YP+I+
Sbjct: 63  RAYYDRCSEPLAHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISDFLKAYPEIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N  +D+  +  D  IR  + ++ S+++ ++L     +  AAP YL++   P + 
Sbjct: 123 IDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPGYLRDRAFPTNP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +       +      W     R   + R+S  +    + ++  +   G GI 
Sbjct: 182 EDLKDHRCVLLNGRNGEA----EWHLISGRKSVDVRVSGAISSRDFDAVSAFTYRGHGIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLP     +      L+R++ D  +P   V+  YP       +L+ F + +  
Sbjct: 238 LLPSTYCDEQIERGALIRVLPDWSSPEIFVHAVYPTRRFLPLRLQVFLDALKA 290


>gi|167892989|ref|ZP_02480391.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           7894]
          Length = 324

 Score =  251 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 61  EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 121 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 180 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 292


>gi|78061647|ref|YP_371555.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969532|gb|ABB10911.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 308

 Score =  251 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 138/294 (46%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VA +G F+ AA +L ++ SS++R +  LE  +G  L  R  R +TLT+ GS  
Sbjct: 6   ALRAFIDVAETGGFSKAARRLGVATSSVTRLMDALEKSLGSALLTRTTRHVTLTDAGSAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + V   L+     + ++ +   G LR++  +  G+  L  ++  FL  +P I + L
Sbjct: 66  LEQITRVLSDLDEADGSVSDTGIDAVGPLRVSMPVTFGRLCLGPHIASFLQQHPRISLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  +D++ +  D A+R+  P    +LI  +L   H +  A+  YL++   P S ++L
Sbjct: 126 VLSDSTLDLAAERIDVAVRIGTPANQPNLIVNRLAEHHRYVVASRDYLESNGIPTSPEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + F          F    + +      R   L VN+   + +  + G GIALLP 
Sbjct: 186 RNHQCLRFAYQAALQRWSFTRAGSTEHVEIHGR---LSVNNSDVLREVVISGLGIALLPQ 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLK 293
           ++V+++     L R+ ED           VY  Y    +++ K+ A  +F+  +
Sbjct: 243 WLVEEDVMAGRLTRLFEDYSVNPLDQTVCVYAAYLPNRRHSRKVHALLDFLRHR 296


>gi|50086132|ref|YP_047642.1| LysR family transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49532108|emb|CAG69820.1| putative transcriptional regulator (LysR family) [Acinetobacter sp.
           ADP1]
          Length = 309

 Score =  251 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 5/291 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D  + F  VA  GS + AA++ ++S S  S++I  LE+ + ++LFYR  R +TLT++
Sbjct: 6   MNTDDFQFFIRVADCGSLSKAAQEANISVSVASQRIQRLESTLKLRLFYRTTRKITLTDE 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL            T +  L       +G LR+ T+   G  +L   +  F LL+P +
Sbjct: 66  GRKLLDFGRYWLDDFITLKDTLTARDKPLTGNLRVTTSATFGIKILTKVIANFALLHPTL 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L++++ID+     D AIR+ K +  SSL+ + L+T H    AAP YL     P S
Sbjct: 126 NIYLDLNDQNIDLIEHGMDLAIRIGK-LNDSSLVAKPLMTNHRLICAAPSYLNQYGMPHS 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I++L +H  I          + +  +      +     +    NS  +I Q  + G GI+
Sbjct: 185 IEDLQQHRCI-LQQHQNGLTDHWQLIDQKRTVVDVHLKAYFTTNSGEAIRQAALQGLGIS 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               + V D+    +L+ ++ +      T+Y  +P       K + F +++
Sbjct: 244 NHSRWHVADDLEQGHLIELLPEYQIEPTTIYAVFPNRQFRQPKTELFLSYL 294


>gi|170728449|ref|YP_001762475.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813796|gb|ACA88380.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 303

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 144/289 (49%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA ++ + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +  + +  ++E  +  ++ +    SG LR+A  +   Q L+      F+ LYP+I+
Sbjct: 63  ALFFQHCTSISDEIEAAKATIENTHNDVSGSLRVAIPVSFSQELIANLCSSFMRLYPNIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++++ +  +  D AI+   P+QSS L+ R L+       A+P YLK    P + 
Sbjct: 123 LDVQFTDREVGLVGEGYDIAIKYG-PLQSSDLVARLLLERQPILVASPGYLKANGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL +H+ I  G      +     L    R         ++VNS + + Q  +   GIA+
Sbjct: 182 QELMEHSGILLGTSRSAPIWP---LGKGARKTMVSFKRKVRVNSAVMVKQLVLDDFGIAM 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L + + K+   + +LV ++++       VY  Y    +    +  F +F
Sbjct: 239 LSNSVCKNELASGSLVPLLQEWPIEPIKVYGVYSSRRQLAANISVFLDF 287


>gi|90409283|ref|ZP_01217383.1| hypothetical transcriptional regulator [Psychromonas sp. CNPT3]
 gi|90309618|gb|EAS37803.1| hypothetical transcriptional regulator [Psychromonas sp. CNPT3]
          Length = 300

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 138/300 (46%), Gaps = 12/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +RVF     SGSFT A   L++  SSI+R I  LE E+G+ LF R  R L +TE G 
Sbjct: 2   LDLIRVFIQTVDSGSFTKAGAVLNMVPSSIARNIDNLEKELGVTLFKRSTRQLLITEDGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     +++    +     + + + +P G L+I+     G+  +   L EFL  YP +Q+
Sbjct: 62  QFLGGATKLLQDADNLVASMSKINREPEGILKISVFESFGRQCISPILPEFLQRYPKVQV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ LDN+ ID++ +  D  IR+ +P   S L  R L+T H    A+  YL+    P + +
Sbjct: 122 EIELDNQMIDLNSENVDIGIRIGRP-ADSCLHARMLLTNHTLLCASADYLEKYGTPKTPK 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN +   +   +    FN      + +  P    L+      +++  + G GI  +
Sbjct: 181 DLIHHNCLLLANDKQRTYWYFN---KNKQHLKIPVRGNLRSKGGTPLLEAAIYGGGIVQM 237

Query: 245 PDYIVK---DNPNLVRIMEDVIT-----PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +++     +  ++  + D         S  +Y  Y  +      L+AF +F+  K  D
Sbjct: 238 SRWMMTPLIASGKVIVCLADWKASLYEGSSAEIYAVYHGSKYPRPALRAFLDFLMEKVND 297


>gi|53718953|ref|YP_107939.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|167738007|ref|ZP_02410781.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei 14]
 gi|167815188|ref|ZP_02446868.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei 91]
 gi|167845144|ref|ZP_02470652.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei B7210]
 gi|167902144|ref|ZP_02489349.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei NCTC 13177]
 gi|52209367|emb|CAH35312.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
          Length = 299

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP 
Sbjct: 61  DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVELGVTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H  + +       +  + W+   +      R + + VNS  + +  C+ G G+
Sbjct: 180 TPADLERHRPVNYASPSNGRVAPWEWVEGDEVKRVALR-ARVTVNSAEAYIACCLAGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V  +     LV ++ D       +   YP     + + + F  ++    R
Sbjct: 239 IQIPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLR 295


>gi|119897452|ref|YP_932665.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119669865|emb|CAL93778.1| putative transcriptional regulator,LysR family [Azoarcus sp. BH72]
          Length = 321

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 132/295 (44%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  VA  GS + AA    ++ + I R++ GLE  +G++L  R  R +TLT 
Sbjct: 1   MDQLKQIETFVAVASRGSLSAAARAEGVTPAVIGRRLDGLEARLGVRLLVRTTRSITLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + L   +  +    VKPSG LR++     G+  +   ++EFLL  PD
Sbjct: 61  EGSAFLEDCQRILNDLSNAEASVSLGGVKPSGHLRVSAPAGFGRRHVAPLVREFLLANPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L ++ +D+  +  DCA+R+   +  SSL+  KL        A+P YL     P 
Sbjct: 121 VSCSLDLSDRLVDLVNEGLDCAVRIGD-MADSSLVSVKLADNRRVVVASPDYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L +H  +T           + +       +       L+ N    + ++ + G G+
Sbjct: 180 TPEDLPRHVCLTLVQ-----QRGWQFADGRGGAVSAKVAGRLECNDGAVLHEWALAGQGL 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A    + V ++     LV ++++       +Y  +P       +++ F +++  +
Sbjct: 235 AWRSLWEVSEDLAAGRLVSVLDEFAARPTGIYAVFPYRRNLALRVRYFIDYLKQR 289


>gi|317493843|ref|ZP_07952260.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918170|gb|EFV39512.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 297

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++          LE     L + +   SG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIADLEQELESLVQLNGTASGNIRLSAGEHAARSLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 LELVVDNGFVDIVEGRFDAGIRLGESVDKDMIAVRIGPDMRMAVVGAPSYFAENPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W    +      R+   +  N     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEKEGKPLRVRVEGQVTFNLQAERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V+D   +  L+++++D        Y  YP   ++        + +
Sbjct: 243 CIPEDRVQDYIKSGELIQVLQDWCPSFPGYYLYYPSRKQHPPAFALMIDAL 293


>gi|170720874|ref|YP_001748562.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758877|gb|ACA72193.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 312

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 7/292 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   + + +  F     +GSFT AA+QL L++S++ + I  LE  + ++L  R  R L++
Sbjct: 1   MELHNLNDIAAFVSSVNAGSFTAAAKQLGLTRSAVGKSIVRLEARLQVRLLNRTTRSLSM 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G  L+     V   L+  +  L      PSG+LR++  + LG+  +  +++  L  +
Sbjct: 61  TDDGQVLYERCVGVLQDLDDVEDALAFRRSTPSGRLRMSLPVALGRLHVLQHIEYCLKDW 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +   ++ +D+  +  D A+R+  P + S L+ R +    M   A+P YL    E
Sbjct: 121 PSLSVDITFSDRLVDLIDEGFDLAMRIGPPKEDSRLLTRTVAYQQMITCASPTYLAEHAE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + ++L  H  + F         +F         +       LQ++S  S+ Q  V G 
Sbjct: 181 PKTPEDLTGHQCLHFVSGGRLLPWNFR---VNGSAVSVTHGGRLQMDSAESLHQSAVAGL 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GIA LP Y+V D+     LV+++      +  +   YP     + K++ F +
Sbjct: 238 GIATLPSYVVNDDLRSGKLVQLLAGYAEAAEPIRVIYPSKRHLSPKIRLFID 289


>gi|313497525|gb|ADR58891.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 298

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 127/301 (42%), Gaps = 8/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V    SF  AA +L +S ++++R +S LE ++G+KL  R  R + LTE
Sbjct: 1   MDQIHLMKVFVAVGELESFAAAARRLDISAAAVTRAVSALEEQLGVKLLLRTTRSVRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +    T  +   +          +  P G L +   I  G+  +   +  +L  YP+
Sbjct: 61  AGGRYLEDTRHILASIHEANEAAAGINATPRGDLAVTAPILFGKKFVMPCIVRYLQQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +     ++ +++  +  D A+R+  P+  S L   ++  +     A+P YL     P 
Sbjct: 121 VDVSAFFLDRVVNMVEEGMDVAVRIG-PLPDSGLKALRVGRVRRMLCASPDYLARHGVPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H +I   +L P+    F      D P        L V S    +     G GI
Sbjct: 180 HPSDLAGHAIIGTTNLSPRAGWRFG---VTDEPTLVRMKPRLTVTSNDGAIAAASGGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A L  Y V D   +  L  ++ +     + ++  + E+   + K++AF + +    RD +
Sbjct: 237 ARLLSYQVADELASGQLQVLLAEYEEAPWPIHVLHRESKYGSAKVRAFIDMLAQGLRDQQ 296

Query: 299 F 299
            
Sbjct: 297 L 297


>gi|254180243|ref|ZP_04886842.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184210783|gb|EDU07826.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 299

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP 
Sbjct: 61  DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVELGVTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H  + +       +  + W+   +      R + + VNS  + +  C+ G G+
Sbjct: 180 TPADLERHRPVNYASPSNGRVAPWEWVEGDEVKRIALR-ARVTVNSAEAYIACCLAGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V  +     LV ++ D       +   YP     + + + F  ++    R
Sbjct: 239 IQIPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLR 295


>gi|257485191|ref|ZP_05639232.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331010904|gb|EGH90960.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 303

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 132/300 (44%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L  R  R L LT
Sbjct: 1   MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H         L     +L     +P G+LRIA   D         + +FL  YP
Sbjct: 61  QAGEDFHERCVGAVDGLMDAAEQLVSHREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDSMVASPAYIAAHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+Q L  H  ++     P     +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGPDAKMHEVQMASRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K RD
Sbjct: 238 GIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLRD 297


>gi|172063515|ref|YP_001811166.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996032|gb|ACB66950.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 303

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 134/293 (45%), Gaps = 6/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT 
Sbjct: 1   MDHLHAMRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLRVRLLQRTTRRVALTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +   + +   L+  +    ++   P G +R+        N +   L++F   YPD
Sbjct: 61  EGATYYERCTRLLADLDDAETLFDDAGAAPRGVIRVDLPERFALNKVIPALQDFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P 
Sbjct: 121 LRVVLSTTDRFVDLVADGIDCAVRVG-VLSDTSLVARRIGELSQINCASPAYLARYGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S  +L  H  + +         D+ +       +   ++ S + VNS  + +  C+ G G
Sbjct: 180 SPDDLPDHVAVGYFSSRTGRELDWEYADMDTGALQTVKMRSVVAVNSSQAYLACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   P   +    ++ +LV ++ +       V   +P +     +++ F +++
Sbjct: 240 LIQAPREGLAPLLEDGSLVEVLPEWHAEPLPVSVVFPNSRHLAPRVRIFVDWL 292


>gi|91777464|ref|YP_552672.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690124|gb|ABE33322.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 295

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F   A SGSF  AA    +S     R +  LE  VG  L  R  R  +LTE
Sbjct: 1   MDRLTSMAIFVKAAESGSFAAAALAFGISSQMAGRHVIALEERVGAPLLARTTRRQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +    E  +    + S  P G+LR+   +  G   L   +  +L   P+
Sbjct: 61  IGQIFYERCKALLADAEAAESVAMDFSASPRGRLRVTAPVTFGSCCLAPLITRYLRANPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L L ++ +D+  +  + AIRL  P+  SS+I + L+   + A A+P YLK   EP 
Sbjct: 121 VQVDLTLTDRFVDLVDEGYEVAIRLG-PLSDSSMIAKPLMPYRLLACASPAYLKEHGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L +H  + F         ++    +             Q N   +++   + G GI
Sbjct: 180 TPEALARHECLGFSFTSLPPYNEWV-FGSARGKHAVTVTGRFQANDTKALIAAAIDGFGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           AL P+  +KD+     LVR++     P   ++  +  A + T KL+AF + +  +
Sbjct: 239 ALAPEIAIKDDIAAGRLVRLLRKYEAPERPMHALF-TARRPTPKLRAFIDLVVAE 292


>gi|83716204|ref|YP_438216.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650029|gb|ABC34093.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 335

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 141/291 (48%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF  V R  SF+ AAEQL +S + +S++++ LE  +G +L +R  R + +TE G
Sbjct: 36  NLDDLRVFSAVVRLASFSAAAEQLAVSPAYVSKRVALLEKRLGTRLLHRSTRRVAVTEAG 95

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G+++L   L +F   YP + 
Sbjct: 96  ERVFAWAEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLDFSERYPQLD 155

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I    LI ++L T +    A+P YL  C  P  +
Sbjct: 156 VRLDLFDRLVDVAGEGFDLDIRIGDEIAD-HLIAKRLATNYRVLCASPGYLARCGTPRQL 214

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  +   +   +      W  TV       ++   L  N     +Q+ + G GI 
Sbjct: 215 ADLAAHQCLAIKE---RDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIV 271

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   +       +  L R++ D + P+  V+  YP  L  + K++   +F+
Sbjct: 272 LRSIWEAGPLLASGKLERVLPDALQPA-NVWAVYPARLAASAKVRVCVDFL 321


>gi|76810135|ref|YP_332367.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|76579588|gb|ABA49063.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
          Length = 428

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 105 MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 164

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  S KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 165 EGAAYYEHCIKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPD 224

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP 
Sbjct: 225 IVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPA 283

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 284 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYVTCGVEGFG 341

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++         +   YP +   + K++ F ++I  
Sbjct: 342 MIQPTLFMVLPHLL---DGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAE 396


>gi|327481837|gb|AEA85147.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 302

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 120/287 (41%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F +VA  GSF  AA + +++   + R++  LE  +G+KL +R  RGL+LT+ G +  
Sbjct: 7   LRSFVLVADCGSFAAAAHKENVTPVVMGRRLDALERHLGVKLMHRSTRGLSLTDLGEQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +     +        G L ++     G+  +  +   F   YPD+Q+   
Sbjct: 67  ERARGLLKDFDEVDASISHDRTSVRGHLVVSAPAAFGRRHIGPHAPAFQARYPDLQLSFN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+     D  IR+ + +   + +  +L         +P Y      P +++EL 
Sbjct: 127 FTDSVVDLVRHGYDMGIRIGE-VTDPNYVAVRLFPNRRVVCGSPEYFARHGTPTTLEELT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +HN + F     +  +   W    D      R++  L  N    +  +   G GI     
Sbjct: 186 EHNCLAFNL---QGGQQRGWTFLRDGRQVAIRVAGNLDCNDGELLFDWVKQGLGIGWRST 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + ++       LV ++++   P++ +   YP+      K++ F +++
Sbjct: 243 WEIQAELKRGELVTVLDEYALPAYDIQAVYPQQRYLPAKVRFFIDYL 289


>gi|212709333|ref|ZP_03317461.1| hypothetical protein PROVALCAL_00368 [Providencia alcalifaciens DSM
           30120]
 gi|212688245|gb|EEB47773.1| hypothetical protein PROVALCAL_00368 [Providencia alcalifaciens DSM
           30120]
          Length = 338

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 149/301 (49%), Gaps = 12/301 (3%)

Query: 1   MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+  D + L +F  V  +G+F+ AAE+LHL++S++S+ IS LE  +GI LF R  R  TL
Sbjct: 36  MNKLDLNCLPIFIAVVEAGNFSAAAERLHLTRSAVSKSISRLEGSLGIALFQRTTRQQTL 95

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G  L+    +  + L+     L+       GK+ I     LG   +   L E + LY
Sbjct: 96  TNDGMVLYEYAGKALNALQEASNYLESGKRNVEGKVCITAPRLLGNLYVVPLLVELMKLY 155

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P ++I+ +L+++++D+  +    A+R+ K   S+ LI  ++    M   A+P YL     
Sbjct: 156 PKLEIETVLNDRNVDLQQEGVHVAVRVGKLADSNQLIAHEIGYHKMIFCASPSYLAEHGI 215

Query: 180 PLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           P  + ELDKH LI +   G ++P  + D N  A    P     IS L ++   +IM   +
Sbjct: 216 PQQLSELDKHQLIAYTQAGKILPWHVFDQNQQAHRYLP-----ISKLVMDDMQTIMFAAL 270

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+GIA LP ++VK+N    +L+ I+    +  + +   +        K +   + I  K
Sbjct: 271 NGAGIAYLPQWLVKENIKTGHLIEILSIYQSARYPISVVWVATSFLPLKTRVVIDAIREK 330

Query: 294 A 294
            
Sbjct: 331 L 331


>gi|119383081|ref|YP_914137.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119372848|gb|ABL68441.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 324

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  F  V   G+ T AA +L+LS+S +S++I+ LE  +G  LF R+A  +T T
Sbjct: 1   MRYDLNDLETFLTVMELGTVTAAAARLNLSKSVVSKRITDLEATLGAALFRRNAGRITPT 60

Query: 61  EQGSKLHRVTSEVYHKLETT---QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           E   +L         +L           +      G L +A  +  G   L   +  F  
Sbjct: 61  EAALRLAERLRPALAELIAAAESTAWDMDGLAPLRGSLSVAAPMSFGVLHLGPIIARFAA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P+++I +  D++  D++ +  D  IR+ K ++  +L+QRKL      A A+P YL   
Sbjct: 121 QNPELEISVDYDDRSRDLAREGFDIGIRIGK-MRDKALMQRKLCEDASIACASPAYLDRK 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P ++ +L +H +I +  L    +  F      DR +       L +N+  +I    + 
Sbjct: 180 GRPQTLADLREHEVIGYSHLPNSQLWQFQ---DRDRFVSPFVQGRLSMNNGEAIRDMTIE 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+A+LP ++V     +  L R++    T    +   +P       KL+ F + + ++ 
Sbjct: 237 GLGLAMLPGFVVAPALADGRLERVLPGFGTRPLPIVAVWPPVQPMPAKLRRFIDHLAVEL 296


>gi|325293834|ref|YP_004279698.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325061687|gb|ADY65378.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 299

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 142/293 (48%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +G+F+ AA  L++ +++++  +  LE  +   L  R  R + LT 
Sbjct: 1   MDQLSAMRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHLHTTLLNRTTRRVMLTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   S++  ++E     +  + V+PSG+LR+         ++  +L EF   YP 
Sbjct: 61  DGALYYERASQILSEIEELDGSMSSAQVQPSGRLRVEMAGVFADLVVIPHLCEFYQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L + ++ +D   +  DCA+R+   ++  SLI RK+  +    +A+P Y+++   P 
Sbjct: 121 IRLDLGVGDRLVDYIAENVDCALRVG-TLRDQSLIARKVGELKFETFASPLYIESFGMPQ 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L+  H+ + + +     +   ++   + R +       + VN   + +   + G G
Sbjct: 180 QPEDLENGHHSVGYFNATTGQIMPISFDNGL-RSVEITPNYVVSVNDSRTYLNAALAGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  LP ++VKD      LV ++ +       +Y  YP+    T K++ F +++
Sbjct: 239 MVQLPVFMVKDALARGELVPVLPEWRREPMPIYVVYPQTRHVTNKVRVFVDWL 291


>gi|119773147|ref|YP_925887.1| LysR, substrate-binding [Shewanella amazonensis SB2B]
 gi|119765647|gb|ABL98217.1| LysR, substrate-binding [Shewanella amazonensis SB2B]
          Length = 290

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 138/295 (46%), Gaps = 11/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  VA + SFT AA +L +S + +SRQ+  LE  +G KL YR  R ++LTE 
Sbjct: 1   MRWEGICEFVAVAEAQSFTAAAGRLGISTAQVSRQVRELEERLGSKLLYRTTRKVSLTED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R   +V   L+  +  +     +P G +R+   +  G+  +   +  ++  +P +
Sbjct: 61  GQLFYRHCRQVLDGLDEAERAVSSLKSEPRGLIRMTAPVTYGEQYVMPIVLAYMQQFPQV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q  L N+ +D+     D AIRL   +  SS++ RKL     +  A+P Y+     P S
Sbjct: 121 EVQCELTNQQLDLVQGGFDLAIRLG-VLPDSSMMARKLAERVQYLVASPDYVSRHGAPHS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H  +  G L     ++   L ++           L  +S  +++   + G GIA
Sbjct: 180 LSELSRHQCL-LGSLPFWRFQEEGKLRSLKVK------GRLSCSSGNTLLAAALAGMGIA 232

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LP Y V +   +  L+ +++    P   ++  YP   + + K+    N +  K 
Sbjct: 233 QLPGYYVDEAIRDGRLLVLLKPFQEPKEGIWGLYPHNRQLSPKIGHLMNMLADKL 287


>gi|145698322|ref|NP_417978.2| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|238902610|ref|YP_002928406.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|3916007|sp|P37641|YHJC_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator
           yhjC
 gi|145693193|gb|AAC76546.2| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|238862321|gb|ACR64319.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|315618448|gb|EFU99035.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Escherichia coli 3431]
          Length = 299

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 61  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 297


>gi|170703626|ref|ZP_02894366.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170131461|gb|EDT00049.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 313

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 134/296 (45%), Gaps = 5/296 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+     P 
Sbjct: 121 VHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVDAHGAPH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H  +          +++         +        +VN   ++      G GI
Sbjct: 181 TPADLEQHICLGMV-APGFHFDEWALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP Y       + N+VR+M +  +    +Y  YP       K++ + +F+  + 
Sbjct: 240 GGLPLYSAIGGLRSGNIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLRDEL 295


>gi|294650182|ref|ZP_06727557.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823921|gb|EFF82749.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 310

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +    +  F    + GS+THAA+ L LS+S+I + I  LE ++ ++L  R  R L+L
Sbjct: 1   MEINRIGDISAFVASVKYGSYTHAAKHLGLSRSAIGKSIVRLEEQMEVRLLNRTTRSLSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G  L     ++   LE     +    ++P G L++     LG   +   L  FL  +
Sbjct: 61  TDEGRILFDYCQQILEGLEEVDHVMASRRLEPIGTLKVTAPHSLGHRYILPILDTFLKKW 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P ++  +   ++ +DI  +  D  IR+ +P   S L+ R +    M   A+P Y+K    
Sbjct: 121 PGLKADISFTDRFVDIIEEGFDIGIRVGEPKDDSRLLTRTIAWQKMQTCASPQYIKLYGS 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLG 238
           P + ++L K + I             NW    D  I        ++++S  +I+   V G
Sbjct: 181 PQTPEDLAKFDTIFLN----GSNNRRNWKFKTDTGIYVFEGPEKMKIDSSDAILASAVSG 236

Query: 239 SGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI  LP YI +++     L+ ++E        +   YP     + +++ F +++  +
Sbjct: 237 FGIIQLPTYITEESIDQLQLIPLLEKYTVEPEPIRIIYPSKKHLSPRIRMFIDYLVEQ 294


>gi|170703181|ref|ZP_02893990.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170131913|gb|EDT00432.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 303

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 132/293 (45%), Gaps = 6/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT 
Sbjct: 1   MDHLHAMRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLRVRLLQRTTRRVALTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +   + +   L+  +    ++   P G +R+        N +   L +F   YPD
Sbjct: 61  EGATYYERCTRLLADLDDAETLFDDAGAAPRGVIRVDLPERFALNKVIPALPDFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P 
Sbjct: 121 LRVVLSTTDRFVDLVADGIDCAVRVG-VLSDTSLVARRIGELAQINCASPAYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S  +L  H  + +         D+ +       +   ++ S + VNS  + +  C+ G G
Sbjct: 180 SPDDLPDHVAVGYFSTRTGRELDWEYADMDTGALQTVKMRSSVAVNSSQAYLACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   P   +    ++ +LV ++ +       V   +P       +++ F +++
Sbjct: 240 MIQAPREGLAPLLEDGSLVEVLPEWHAEPLPVSVVFPNGRHLAPRVRIFVDWL 292


>gi|91777440|ref|YP_552648.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690100|gb|ABE33298.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 313

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 126/294 (42%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF      GSF  AA +  LS +   + +S LE E+  +L +R  R L+LT+
Sbjct: 1   MDRLTSLGVFVAAVEEGSFAGAARRFGLSAAMAGKHVSALEAELNARLLHRTTRRLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +  +    +  + E  +S     G LRIA  +  G   L   +  ++  +P 
Sbjct: 61  TGQTYYERSKRILEAFDEAKREASDSQGTARGVLRIAAPVTFGAMHLGEVVARYMEDHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++L ++ +D+     D AIR+ K ++   L+ R+L    M   A+P YLK    P 
Sbjct: 121 VNVEVLLGDRYVDLIDAGVDVAIRIGK-LEDPGLVTRRLAPCRMVVCASPAYLKRHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +   + F + +     D+      +R         +  N+   ++   + G+GI
Sbjct: 180 KPDDLLRAQRLAFSEAVSAG--DWTLHDRKNRAHVIDGPCRMTANNTQMLLASAIAGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P ++   +     LV ++        T+   YP A +   K++ F +++  
Sbjct: 238 VYGPTFVFGAHIRSGELVALLPAYRAADLTIQAVYPSARRIPLKVRRFVDYLAE 291


>gi|21230893|ref|NP_636810.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769108|ref|YP_243870.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188992256|ref|YP_001904266.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112503|gb|AAM40734.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574440|gb|AAY49850.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167734016|emb|CAP52222.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 344

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 134/298 (44%), Gaps = 5/298 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANSLGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGAVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRVGA-LPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
           L   EL  H  +            F W  +    + E P    +  N   ++    + G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVREFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+ L  D + K    +  + R++     P       +      + K++AF +F+  + 
Sbjct: 240 GLLLTGDVMAKPFVQSGMVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTRL 297


>gi|50122057|ref|YP_051224.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612583|emb|CAG76033.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 297

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 134/291 (46%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L LSQS++S  I GLE  +G++L  R  R +  TE G
Sbjct: 5   NFNDLISFLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL       +  +E+  I L +   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  EKLAHSLGPRFADIESELIALGDMRDRPAGNIRITAGEHAVDSILWPMLKPFLANYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ +DN   DI +   D  IRL + +    +  R    + M    +P+Y      P++ 
Sbjct: 125 IEITMDNALTDIVVGRFDAGIRLGEQVAKDMIAVRIAPEMSMVVVGSPNYFARNPVPITP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W      R I       L +NS    +    +G G+A
Sbjct: 185 QDLQHHRCINM--RLPTMGGIYAWEFEKSGREIKVRVEGQLTMNSLRQRIDAAQIGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V+D+     L++++ +   P    Y  YP   ++T     F   +
Sbjct: 243 YVPEDSVRDDIASGRLIQVLTEWCPPFPGYYLYYPSRKQHTTAFSLFVEAL 293


>gi|330937149|gb|EGH41195.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 304

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 128/288 (44%), Gaps = 5/288 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   AR+GSFT AA++L +++S++ + I+ LE  +G KLF+R  R L LT  G      
Sbjct: 13  IFVTAARAGSFTSAADRLGITKSAVGKSIAKLEERLGCKLFHRSTRSLGLTVDGEAYFAS 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S    ++   +  L  +   P G+LRI      G++++   L + L   P +++ +  +
Sbjct: 73  CSLAVDEVLAAEAFLTSNQKTPGGRLRIDLPAAYGRSVVLPVLLDILEANPGLKLTVTFN 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID+  +  D +IR      +S L+ R+L        AAP Y++    P S ++L +H
Sbjct: 133 DSVIDLIEEGVDLSIRFGALKDTSGLVARRLAVQKQIICAAPRYIQKHGYPESPEDLQQH 192

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I   +        +  L               +V    +I+     G GI  +P  ++
Sbjct: 193 RCIV--NYRRGQRVSWTVLDESGELARITPPGTHEVGDGDAIIAMAAAGPGICQMPGSLI 250

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +D   +  LV ++E        ++  +P+      K++   + +  +A
Sbjct: 251 RDHLKDGRLVPVLEKYHPDDVAIHAVWPQTRHLQPKVRRVVDELVARA 298


>gi|294665670|ref|ZP_06730946.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604565|gb|EFF47940.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 344

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRVGA-LPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
           L   EL  H  +            F W  +    + + P    +  N   ++    + G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K    +  + R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|296161939|ref|ZP_06844739.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887815|gb|EFG67633.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 313

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 123/294 (41%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF      GSF  AA +  LS +   + +S LE E+  +L +R  R L LT+
Sbjct: 1   MDRLTSLGVFVAAVEEGSFAAAARRFGLSAAMAGKHVSALEAELNAQLLHRTTRRLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +    +  + E  +S     G LRIA  +  G   L      ++  +P 
Sbjct: 61  TGQTYYERCKRILEAFDEAKREASDSQGTARGVLRIAAPVTFGAMHLGEVAARYMEDHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++L ++ +D+     D AIR+ K ++   L+ R+L    M   A+P YLK    P 
Sbjct: 121 VNVEVLLGDRYVDLIDAGVDVAIRIGK-LEDPGLVTRRLAPCRMVVCASPAYLKRHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +   + F + +     D+      +R         +  N+   ++   + G+GI
Sbjct: 180 KPDDLLRAQRLAFSEAVSAG--DWTLHDRQNRAHVIDGPCRMTANNTQMLLASAIAGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P ++   +     LV ++        T+   YP A +   K++ F +++  
Sbjct: 238 VYGPTFVFGAHIRSGELVALLPAYRAADLTIQAVYPSARRIPLKVRRFVDYLAE 291


>gi|261863724|gb|ACY01335.1| unknown [Erwinia pyrifoliae]
 gi|283479763|emb|CAY75679.1| Uncharacterized HTH-type transcriptional regulator ycaN [Erwinia
           pyrifoliae DSM 12163]
          Length = 297

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ +    ++++  SFT AA +L +SQS++S  I GLE  +  +L  R  R +  TE G
Sbjct: 5   NFNDIIKLVMISKEKSFTRAAAKLGVSQSALSHSIRGLEERLKTRLLTRTTRSVAATEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +    +   +E   + L E+    SG +RI        + L   LK FL  YPD+ 
Sbjct: 65  ERLIKSVGPMIDDIEKALLHLTENVGSISGNIRITAGEHALSSTLWPLLKPFLQAYPDVN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +DN   DI     D  +RL + I+   +  R      M A A+P YL     P + 
Sbjct: 125 VELSVDNTLTDIVSGRFDAGVRLGESIEKDMVAVRIGPDWRMSAVASPEYLAQYGIPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W  + +    + ++   L  N+  S +   + G GIA
Sbjct: 185 YELQNHRCINM--RLPTLGGLYSWEFSKEGKGIKVKVEGQLIFNNLPSRIDAALSGMGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+  V+   ++  L  ++E+   P    Y  YP   ++T         + LK
Sbjct: 243 YVPEDSVQQYVEDGRLQHLLEEWCEPFNGYYLYYPSRKQHTAAFSKLIEAVRLK 296


>gi|227327282|ref|ZP_03831306.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 292

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 128/289 (44%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F     +GSF+ AA  L++ Q ++SR ++ LE  +G++L  R  R L LT +G + +
Sbjct: 1   MTCFKRTVETGSFSAAARDLNMGQPNVSRYVAALEEHLGVRLLQRTTRQLVLTPEGERYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +   +  ++  L + +  P+G LR+A    +    L   +  FL  YP + + L 
Sbjct: 61  ADVSRILDAVAESESSLSDETE-PTGLLRVACPTAMAHAFLMPQIPAFLSRYPGLSLDLQ 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  + A+ AIR+  P   S+L  R++        A+  YL     P + ++L 
Sbjct: 120 LSDRFVDLVEEGAELAIRIGHP-SDSALRARRIGLFTRVYVASVDYLNRRGIPQTPEDLR 178

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ I +  L       F       R          +VNS  ++ +  + G GIA  P +
Sbjct: 179 DHDCILYSLLNTGNTWHF-------RDTEINVSGRFRVNSPQAVQEAVIAGLGIASGPKW 231

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + KD   +  L +++ D   P   + F Y        +   F +FI   
Sbjct: 232 LYKDGLQSGRLCQVLCDYEAPPVPIQFLYVANRLLPKRAIVFMDFIAEA 280


>gi|116251096|ref|YP_766934.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255744|emb|CAK06825.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 300

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 127/300 (42%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  V   G F+ AA +L++S + +   +  LE  +G++L  R  R ++LTE
Sbjct: 1   MDRLTSLMVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +S++  +L+         S  P G L++ T+       L   + EF+ LYP 
Sbjct: 61  TGKYYYERSSQILAELDEADRTAGALSTTPRGTLKVYTS-SAIVRFLLPVVSEFMELYPS 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +   +  + +D+  D  D  +R   P   SSL+ RKL         +P Y ++   P 
Sbjct: 120 ISLDFSVGERMVDMIEDGYDLVMRTVPP-PDSSLVARKLTPWRHMLVCSPAYFQSHPMPK 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  E+  HN + +        +++ +               +  NS   +    + G GI
Sbjct: 179 TPAEVADHNCLQYA--YYPYGDEWRFEDGEGNKESVKISGNVVSNSAEMLRFLTLTGRGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            L P ++V D+     LV+IM D     F +   YP       K++ F + +  +  + +
Sbjct: 237 FLAPSFVVFDDIAEGRLVKIMPDYRPVEFNINAVYPNRSHLPTKVRLFIDLLAERFAEHR 296


>gi|70732141|ref|YP_261897.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346440|gb|AAY94046.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 301

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L +R  R L+LT 
Sbjct: 1   MDRLQAMRVFVTVVDLGSQSAAADHLDLSRPVVSRYLAELEDWVGARLMHRTTRKLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++     ++       Q  + E    P G LRI+ +   GQ+ L   + +++  YP 
Sbjct: 61  AGGEILPRCRQMLELSSDMQAAVGEPDDAPRGLLRISVSTSFGQSQLADAVADYVKRYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L + ++ +++  +  D AIR    +   +LI R+L        A+P YL+    P 
Sbjct: 121 VSIDLQMLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLTVCRSVICASPAYLREHPAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL++HN +T                     +  P    +  N   ++++  + G+GI
Sbjct: 180 RVEELNRHNCLTHSYFGKSLWH----FEQDGEQVSVPVQGNISANEASTLLRTTMAGAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+LP Y   +      LVR++      +  +Y  Y         L++  +F+ L+
Sbjct: 236 AMLPSYQAGEYIKRGELVRLLPHAEPRTMNMYAVYASRKHMPATLRSMLDFLVLR 290


>gi|108760643|ref|YP_634909.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108464523|gb|ABF89708.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622]
          Length = 305

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 142/293 (48%), Gaps = 11/293 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F     +GSF  AAE++ LS+S++ + I+ LE  +  +LF R  R   LTE G   +  
Sbjct: 10  AFVQAVEAGSFALAAERMGLSRSAVGKSIARLEERLETRLFQRTTRRQGLTEDGQAFYER 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                 +LE  +  L      P+G+LR++  +  G++     L+E +L +P +++++   
Sbjct: 70  CVRALAELEAAETALDSGRRAPTGRLRVSAPVMFGRHCAAPLLRELVLQHPGLELEIAFS 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D A+R+      + L  R+L    M   AAP YLK    P ++++L +H
Sbjct: 130 DRMVDLVEEGYDLALRVAPLADHAGLTARRLGVQTMSVCAAPGYLKRHGRPKTLEDLGEH 189

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGIALLPD 246
           + + +G         F      D   GE RI+    L+ +   +IM   V G+G+A LP 
Sbjct: 190 DAVVYGRNGVNKPWRFP-----DGQGGEQRIAVQARLRFDDVETIMDAAVQGAGLAWLPR 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +++ ++     LV ++E        +Y  +P++   T K++A  + +  +  +
Sbjct: 245 WLIAEHLSSGRLVEVLETQRPYGNEIYAVWPQSKHLTSKVRAAIDLLVARIPE 297


>gi|262368411|ref|ZP_06061740.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262316089|gb|EEY97127.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 310

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 136/297 (45%), Gaps = 7/297 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +    +  F    + GS+THAA+ L LS+S+I + I  LE ++ ++L  R  R L+L
Sbjct: 1   MEINRIGDISAFVASVKYGSYTHAAKHLGLSRSAIGKSIVRLEEQMEVRLLNRTTRSLSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G  L     ++   LE     +    ++P G L++     LG   +   L  FL  +
Sbjct: 61  TDEGRILFDYCQQILEGLEEVDHVMASRRLEPIGTLKVTAPHSLGHRYILPILDTFLKKW 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P ++  +   ++ +DI  +  D  IR+ +P   S L+ R +    M   A+P Y+K    
Sbjct: 121 PGLKADISFTDRFVDIIEEGFDIGIRVGEPKDDSRLLTRTIAWQKMQTCASPQYIKLYGS 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + ++L K + I       +    F   + +    G  +   ++++S  +I+   V G 
Sbjct: 181 PQTPEDLAKFDTIFLNGSNNRRNWKFKTDSGIYVFEGPEK---MKIDSSDAILASAVSGF 237

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  LP YI +++     L+ ++E        +   YP     + +++ F +++  +
Sbjct: 238 GIIQLPTYITEESIDQLQLIPLLEKYTVEPEPIRIIYPSKKHLSPRIRMFIDYLVEQ 294


>gi|331014330|gb|EGH94386.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 305

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFAKAAESLHIPRASVTILIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFARRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 VRLEIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQITCASREYLQQHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L  H +I +            ++     P      S + VNS    +  C  G G+
Sbjct: 180 QLEDLAHHQVIEYFSASTSKRYGLEFVGEGGAPDHGLACS-ISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y +     +  LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHIAGQLRSGTLVEVLRRHRPPPLALTALYPPHRQLSRRVRVFVDWLVE 292


>gi|167585548|ref|ZP_02377936.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 324

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AA+ L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAADTLTMPRASVTTIIQNLEALLGVRLLHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++       Q  + KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 61  EGAAYYEHCVKIIAEIAEADASFQTGNRKPSGVLRVHMPNALGRRLVIPALPAFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   +P 
Sbjct: 121 ITLDLGLSDRPVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLKRVTCASPDYLKRHGDPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I +L +H  + F            W+  +D    E R+ S + VN   + +   + G G
Sbjct: 180 EIADLAEHVAVNF--RASHGARPIPWVFVIDGKPVEIRLKSTVTVNDSDAYVTCGLEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   + +L+ ++         +   YP     + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGSLLEVLPGFNPKPKPISIVYPHNRHLSTKVRVFADWIQE 292


>gi|170736588|ref|YP_001777848.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818776|gb|ACA93358.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 302

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 135/289 (46%), Gaps = 5/289 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RV+  +  +  F+ AA++L  + S++SRQ+  LE  +G++L  R+ R  +LT  G + 
Sbjct: 6   AMRVYRSLVEAKGFSAAADRLDTTHSTVSRQLKLLEASLGVQLVNRNTRHFSLTPAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+  ++     ++ ++  +PSG LR++  + +G   +   L  F   YPDI++ +
Sbjct: 66  YDACVEILERVAAAAEDVTDTPGQPSGVLRVSIPLSVGTLEMPAWLPAFRTAYPDIRLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +++  +  D A+R+   +  S L+ + L        AAP Y+     P +  EL
Sbjct: 126 SCSDRFVNLIGEGFDVALRISSELPDSDLVAKTLAISDEILVAAPDYVARRGLPRTPAEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +KH+L+ +     +    +        P+       L++++  ++    + G GI     
Sbjct: 186 EKHDLLAYSGGDDRI--SWRVAPPSGAPVTVRLDGPLRIDAITALHAAALGGLGIGAFTH 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + V ++     LV I+          Y  YP++     K++AF +F+  
Sbjct: 244 HTVSNDIAHGRLVPILPGHTLAKRRYYALYPKSRHVPPKVRAFVDFVAA 292


>gi|300927985|ref|ZP_07143542.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|301646056|ref|ZP_07245961.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|300463992|gb|EFK27485.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|301075727|gb|EFK90533.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
          Length = 323

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSKNYLTAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|134282782|ref|ZP_01769485.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|134245868|gb|EBA45959.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 299

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIRELEGRVGARLLHRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP 
Sbjct: 61  DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVELGVTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H  + +       +  + W+   +      R + + VNS  + +  C+ G G+
Sbjct: 180 TPADLERHRPVNYASPSNGRVAPWEWVEGDEVKRVALR-ARVTVNSAEAYIACCLAGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V  +     LV ++ D       +   YP     + + + F  ++    R
Sbjct: 239 IQIPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLR 295


>gi|254197721|ref|ZP_04904143.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|169654462|gb|EDS87155.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
          Length = 299

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 138/297 (46%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S V PSG LR      +G+ ++   L EFL  YP 
Sbjct: 61  DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVELGITDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H L+ +       +  + W+   +      R + + VNS  + +  C+ G G+
Sbjct: 180 TPADLERHRLVNYASPSNGRVAPWEWVEGDEVKRVALR-ARVTVNSAEAYIACCLAGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V  +     LV ++ D       +   YP     + + + F  ++    R
Sbjct: 239 IQIPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLR 295


>gi|149909493|ref|ZP_01898147.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149807398|gb|EDM67349.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 294

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 134/297 (45%), Gaps = 14/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    +L  F  V  +GS + A+    +  SSISRQ++ LE E+GI+L  R  R + LT
Sbjct: 1   MSM-ITRLHYFNCVVETGSISAASRVFDVQPSSISRQLAALEAELGIRLLNRTTRNIGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  +  +  +  +L+     + +    P G L+I+ T+  G+  +   +  F+  YP
Sbjct: 60  EAGSTYYYYSQRIVAELDEANRAVNDLQQSPKGNLKISMTVGFGEACVLPLVPGFMKAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I+L L  + +D+  D  D AIR  + +  S+LI  KL        A P YL +   P
Sbjct: 120 DVNIELELSERVVDLVEDNVDIAIRSGR-LPDSNLIASKLADNDFLLCATPQYLADNGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L   N I +G          +W    D+P        L VNS     Q  +  +G
Sbjct: 179 ETPDDLINFNCICYG-----YSGWRDWFLMDDKPRKLAITEGLIVNSVNGQKQLVLNHAG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
           + L   + V    +N  LV+++       +    + Y  Y +    + K++ F +++
Sbjct: 234 LVLAARWAVNNELNNGRLVQVLAQHSFSPYERLSSTYALYLKRDLISPKIRVFLDYL 290


>gi|239817992|ref|YP_002946902.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804569|gb|ACS21636.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 308

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 136/299 (45%), Gaps = 5/299 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   A SGSF+ AA +L L+ +++S+ ++ LE  +G++LF R  R LTLTE G 
Sbjct: 4   LNHLQSFVQSAESGSFSAAARRLGLTPAAVSKNVARLEARLGVRLFQRSTRRLTLTEGGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L+     L +   +P+G L+++     G+  +   + +FL  YP I  
Sbjct: 64  RFLGQIGGALATLQDAVAGLSKDDGQPAGTLKVSMGQAFGREHVLPMMGDFLARYPSILP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+  +  D AI     + S  ++ R+L  IH+ A AAP YL     P    
Sbjct: 124 DWHFDNQQVDLVGEGFDAAIGGGIEL-SPGVVARELARIHVVAVAAPAYLAGRALPTQPA 182

Query: 185 ELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL + + L+       +        A  D+   E        N   +I    ++G G+A+
Sbjct: 183 ELAQLDALLRRSSPTGRLRSWTLQHAGGDQATVELPRPRAIFNDPEAIAHAALMGLGVAM 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           LP   V+    +  LVR++ +    +  V+  YP       K + F +F+  + R  +F
Sbjct: 243 LPMPFVERGLRSGELVRLLPEWHFDAGAVWLYYPSKKLLPAKTRVFIDFVLERFRSERF 301


>gi|331671856|ref|ZP_08372652.1| LysR-family transcriptional regulator [Escherichia coli TA280]
 gi|331070845|gb|EGI42204.1| LysR-family transcriptional regulator [Escherichia coli TA280]
          Length = 311

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 19  NFNELQIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      + L+   LK FL  Y +I 
Sbjct: 79  ERIIACLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARTLVWPKLKPFLREYLEIN 138

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 139 VELVVDNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETP 198

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L  +     +   + G GIA
Sbjct: 199 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIA 256

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V++   +  L++++++        Y  YP   ++        + +
Sbjct: 257 CVPEDMVQEYIKSGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 307


>gi|323494047|ref|ZP_08099163.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323311674|gb|EGA64822.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 305

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 14/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +R+F  V  SGSF+ A   L+++ SS++R I  LE ++   LF R  R L LTE+G 
Sbjct: 2   LDLIRIFNQVVESGSFSQAGSVLNMAPSSVARNIDNLEAQLKTTLFKRSTRQLLLTEEGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+    +     T   E++++  +P G LRI+     G   L   + +FL  YP +++
Sbjct: 62  YFHQQALPLLDNANTLVEEMKKTHRQPEGLLRISAFESFGNIFLAPLIPKFLQQYPKVKV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L LDN  +D++ +  D AIR+  P + S L  RKL+T      A+P YL N  E  +  
Sbjct: 122 ELELDNNVVDLNSENIDIAIRIGSP-KDSRLRARKLMTNQTLLVASPDYLNNHPEITAPD 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN +    LI +  +  +W     +   +  ++  L       ++   + G+G+ L
Sbjct: 181 DLADHNCL----LISQKRQRSHWHFQRGKVNKQVMVTGNLSSRGGSPVLWGALQGTGVLL 236

Query: 244 LPDYIVK---DNPNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAFRNFIF 291
           L D++VK       LV ++ +         S  +Y  Y         ++AF +FI 
Sbjct: 237 LSDWMVKPYLQQGRLVHLLPEWHASYRENRSGEIYALYKTTQYPKPHIRAFIDFIL 292


>gi|241765020|ref|ZP_04763015.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241365378|gb|EER60177.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 307

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 125/295 (42%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D       F  VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R ++LT 
Sbjct: 1   MDKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLLVRTTRRISLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +   +   +  + E  VK +G LRI      G+  +   +  F   +PD
Sbjct: 61  EGSAFLEDCQRLLSDVANAEASVSEGGVKATGHLRITAPAGFGRRHVAPLVPRFRTAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P 
Sbjct: 121 VTISLNLSDRVVDLAGEGFDCAVRVGD-LPDSSLVSVRIADNRRLCVATPAYLQGHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLG 238
              EL  H+ +T      +       + T         +     L  +    +  +C+ G
Sbjct: 180 HPAELSAHDCLTLSSEASQTRGWAFRMPTDGGGSEVVHLKPGGPLDCSDGQVLHDWCLAG 239

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+A    + V+       LV ++E+   P   +Y  +P+      +++ + +F+
Sbjct: 240 YGLAWRSTWEVESEIAAGRLVEVLEEFAAPPNGIYVVFPQRKHMPLRVRLWIDFL 294


>gi|186475182|ref|YP_001856652.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191641|gb|ACC69606.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 341

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 4/296 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +   +R+F   A+ GS + A  +L L+ ++ S +++ LE  +  +LF R  R L LT
Sbjct: 1   MTDNLGDIRLFVEAAQLGSLSAAGRKLGLTPAAASARLAKLEGGLKARLFERTTRQLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G        +    L+  +  LQE      GK+RI+ T D G+NLL   L EF  LYP
Sbjct: 61  DEGRVYLSCCQQALRALDDAEAALQEGQNAVRGKVRISATSDFGRNLLMHWLDEFNALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+   L L +   ++  +  D AIR   P Q SSL+ R L        A+P Y+    EP
Sbjct: 121 DVTFALTLSDSLQNLVQEDIDLAIRFGVP-QDSSLVARWLAPNPRVLCASPEYIARHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L + + I  G       E                 S  + N      ++ + G G
Sbjct: 180 KDPLDLARFDCIVLGTASGPVNEWRFTRGDETVTYTIALESARETNDGAVAREWALRGYG 239

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I +   + V+ +     L  ++ D   P   ++  Y        +++   +F+  +
Sbjct: 240 IVIKSMWDVEADLKSDGLRVLLPDWRYPDAPLHALYHRNRFMAPRVRVLLDFLAER 295


>gi|240949139|ref|ZP_04753486.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           NM305]
 gi|240296442|gb|EER47078.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           NM305]
          Length = 296

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 133/297 (44%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT 
Sbjct: 1   MDRIEAMNIFLTVVETGSFTATAERLDLSRPMVTRAVALVEEWFNARLLQRTTRRVSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       + ++     +  G LRIA+    G   L   +K+FL  +P 
Sbjct: 61  AGERAVTHCQKMVDLAAEIEQDILAQQGELQGSLRIASNSSFGSTHLLLAIKDFLQRHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQ  L ++ +++  +  D AIR        +LI R L T H    A+P YL     P 
Sbjct: 121 LNIQFQLSDQSVNLIDERIDLAIRFTNQ-PDPNLIARPLATCHSLLVASPEYLAQKGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L +H  +   ++  K  +        +R I     S    N   +++   +   GI
Sbjct: 180 TPQDLAEHIYLAHANINRKEWK----FYQNEREISLELTSQFTTNDTSALLNLTLASGGI 235

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+LP Y++ ++     LV I+ D   P++ +Y  Y    K    ++   +F+  + R
Sbjct: 236 AMLPKYLLNEHLASQQLVPILTDWQLPTYQIYALYSSRHKLPLTIRTLVDFLVERFR 292


>gi|188494226|ref|ZP_03001496.1| transcriptional regulator, LysR family [Escherichia coli 53638]
 gi|188489425|gb|EDU64528.1| transcriptional regulator, LysR family [Escherichia coli 53638]
          Length = 299

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL  +P 
Sbjct: 61  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|289627450|ref|ZP_06460404.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289648036|ref|ZP_06479379.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330866682|gb|EGH01391.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 298

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + VF +VA + SFT A ++L +S S + + I  LE  +G++LF+R  R + +T +G
Sbjct: 3   SLGSIAVFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEEGLGVRLFHRSTRSIAMTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +LET ++EL  +   P G+LRI+    L   L+   + EF+  YPDI+
Sbjct: 63  SIFLERCRRILSELETAEMELSNARDLPRGRLRISLP--LVSGLVMPVIIEFMRTYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R   P   S L+ R++    +    AP Y      P   
Sbjct: 121 LDIDFSDRMVDIIEEGFDIVLRTGDPG-DSGLMSRRMGGFQLKIVGAPDYFARRGTPQHP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +          E +           +     +  N+   ++     G GIA 
Sbjct: 180 ADLSRHACLLHKFPSSGKFEHWPLRREAGADDLD-LPQVMVCNTTEVLVDVARAGLGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD+++     +  LV I+ D    + +    +P +   + +L+ F +F+  
Sbjct: 239 LPDFMISSAIRSGELVPILTDYTVHTGSFRLLWPSSKHLSLRLRVFIDFMHA 290


>gi|218683009|ref|ZP_03530610.1| transcriptional regulator, LysR family protein [Rhizobium etli CIAT
           894]
          Length = 305

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 140/294 (47%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA   SF  AA+ L +S  ++SR +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEGLAMFAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +Y + E  +   +E + +P G +R+A  +D G   L   L +F  L+P+I 
Sbjct: 66  LRLVDSAARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEIS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + +  +DI  D  D A+R+   +  SSL+ R+L  +     AAP YL     P   
Sbjct: 126 IDLHMSDAVVDIVGDGFDAALRIA-VLPDSSLVARRLTPVDRFILAAPAYLDRHGVPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H+ + +     + +  +       +         L+  +  +++   + G GI  
Sbjct: 185 RELTAHHCLGYAYRARQDV--WRLRNGEGKEEVIVPSGSLRATNSQALVPMALRGLGIIE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP+++  D   +  L  I+ D    +  +YF  P A     K++   +F+  + 
Sbjct: 243 LPEFLAHDYLVDGQLTPILPDWTLATGALYFVTPSARSRPAKIEVLSDFMMARL 296


>gi|167622645|ref|YP_001672939.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352667|gb|ABZ75280.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 303

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 147/289 (50%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA ++ + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +  S +  ++E  +  ++ +    SG LRIA  +   Q L+      FL LYP+++
Sbjct: 63  ALFFQHCSSISDEIEAAKATVENTHNDVSGLLRIAIPVSFSQELIATLCSGFLRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDSDVGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPGYLKIHGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L +H+ I  G      +      A       + ++   +VNS + + Q+ +   GIA+
Sbjct: 182 QDLAEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV---RVNSAVMVKQFVMDDFGIAM 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L + + K+   + +LV ++++    +F VY  Y    +    + AF +F
Sbjct: 239 LSNSVCKNELASGSLVPLLQEWPMEAFKVYGVYSSRRQLATNISAFLDF 287


>gi|86359220|ref|YP_471112.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86283322|gb|ABC92385.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 342

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 137/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE
Sbjct: 46  MDTLTRIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTE 105

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  S++  +++     ++E++ +  G+LR++         +  +L +F    PD
Sbjct: 106 AGHTYYRSASDILKEIDNLADLVRENNAQLKGRLRVSVPRTFVDADVGQSLIDFAGENPD 165

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H  A P +L+   +  
Sbjct: 166 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKISDFRVHLCATPDFLERYPDLD 224

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              ++     I   D   +      +    +          ++VNS  + ++  + G GI
Sbjct: 225 HPSDISNLPFIV--DTNSRTQGSIRFHNPDNTTFAVAVAGPIEVNSPHATLRAALAGIGI 282

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL+PD+I +   ++  LV +  D I     +Y  YP       K++ F +++
Sbjct: 283 ALIPDFIARKPIESGELVTLFNDYIPTDRGIYAVYPHRRYLPAKVRIFVDYL 334


>gi|237654239|ref|YP_002890553.1| LysR family transcriptional regulator [Thauera sp. MZ1T]
 gi|237625486|gb|ACR02176.1| transcriptional regulator, LysR family [Thauera sp. MZ1T]
          Length = 300

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  +   GSF+ AAEQL L ++S ++ I  LE  +G++L  R  R +T T 
Sbjct: 1   MDRLQAMRLFTRIVELGSFSRAAEQLGLPRASATQIIQQLEARLGVRLLARTTRQVTPTV 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +R    +   L+  + E  +++  P G++RI       + LL   L +F   YP 
Sbjct: 61  DGAGYYRRCLRILADLDDAEAEFSQAAHHPQGRIRIDLPDSFCRLLLIPALPDFYTRYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ + ++ ID+  +  DC +R+ + +    L  R+L  +     A+  YL     P 
Sbjct: 121 VRIEISVGDRQIDLIREGVDCVLRIGE-LGDVPLHARRLGRLRQVTCASAGYLAQHPLPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L+ H ++ +                  R       S L VN+  + +  C  G GI
Sbjct: 180 GLEDLEAHWMVDYVSASTAKSLPLE-FEVEGRIELRSLRSRLAVNNGGAYVAACAAGFGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +PDY V+   +    V I+     P   V+  YP     + +++ F +++  +
Sbjct: 239 VQVPDYHVREPLEQGRFVEILPAFPPPVLPVHALYPADRPLSARVRVFIDWLAER 293


>gi|118592916|ref|ZP_01550304.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118434450|gb|EAV41103.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 299

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 131/299 (43%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  + LRVF  V   GS T     L L+ +  S++I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LESLRVFTRVVELGSITSGGRDLRLTPAVASKRIKELEKHLGVRLFNRTTRSLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    +    +E  +  +   S  P G +R+   + +G+ ++   +  F+  +P
Sbjct: 60  EVGKVFYDYAVKALESIEDAEAAVASFSDTPRGVIRVTAPLGVGRRIIAPLVPRFVEKFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
             ++ + L ++ +DI  D  D A  +  P Q S+L  RK+        AAP YL+    P
Sbjct: 120 ATEVHMRLSDRKVDILSDGLDVAFFIGTP-QDSNLKLRKISDCPRVLCAAPEYLEKHGTP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +  +L  D+HN +      P+  E +  L T   P        +  +    +  + + G
Sbjct: 179 RTPDDLLSDEHNCLLL--RYPRSPEYYWVLQTPAGPRKLQVSGKMDADHGDVLTDWALSG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GI   P + V    D+  LV I++D   P       YP       K++ F +F+   A
Sbjct: 237 YGIVNKPRFDVAQHLDSGRLVEILKDTPPPPTIFGCLYPHRRLQDPKIRHFVDFVISNA 295


>gi|66046293|ref|YP_236134.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257000|gb|AAY38096.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 298

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 132/290 (45%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + VF +VA + SFT A ++L +S S I + I  LE  +G++LF+R  R + LT +G
Sbjct: 3   SLGSIAVFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +LE  ++EL  +   P G+LRI+    L   L+   + +F+  YPDI+
Sbjct: 63  SIFLERCRRILSELEAAEMELSNARDLPKGRLRISLP--LVSGLVMPVIIDFMRTYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P   
Sbjct: 121 LDIDFSDRMVDIIEEGFDIVLRTGDPG-DSGLMSKRMGSFQLRVVGAPDYFARHGIPRHP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +          E +           E     +  N+   ++     G G+A 
Sbjct: 180 GDLSQHACLLHKFPSTGRFEHWPLRREAGVDDLE-LPQAMVCNTTEILVDVARAGLGVAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPD+++     N  L+ +++D    + T    +P +   + +L+ F +F+
Sbjct: 239 LPDFMILSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFM 288


>gi|294341522|emb|CAZ89939.1| putative Bacterial regulatory protein, LysR [Thiomonas sp. 3As]
          Length = 301

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 133/293 (45%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +L  F  VA  GS T AA    ++ + I R+I  LE  +G+KL  R  R ++LT+
Sbjct: 1   MDKLKQLETFVAVATKGSLTAAAHAEGVAPAIIGRRIDALEARLGVKLLLRTTRRISLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +  +L+  +  +    VK SG LRI      G+  +   +  FL  +P+
Sbjct: 61  EGSAFLEDCQRLLAELQNAEASVSAGGVKASGHLRITAPAGFGRRHIAPLIPGFLDQHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCA+R+   +  SSL+  +L        AAP YL+    P 
Sbjct: 121 VSLSLDLTDRLVDLVNEGYDCAVRVGD-LADSSLVSLRLADNRRVCVAAPSYLQRHGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L +H  + +  +     +   W+   +  I   R+   +       + Q+C+ G G
Sbjct: 180 TPSDLARHQCLAYSSV---SSQPRGWMFQAEGEILHVRVAGRMDCTDGAVLHQWCLEGRG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V    +   LV ++ED   P   ++  + +      +L+ + +++
Sbjct: 237 IAWRSLWEVGASLEQGKLVALLEDFAAPPNGIFAVFTQRKHQPLRLRLWLDYL 289


>gi|293605928|ref|ZP_06688298.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553]
 gi|292815715|gb|EFF74826.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553]
          Length = 304

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + +  F   A + SF+ A   L +S S++ + +S LE  +G++LF+R  R LTLT +G
Sbjct: 3   SLNGISFFVQAASARSFSQAGRVLGVSSSTVGKSVSRLEERLGVRLFHRSTRSLTLTAEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        +  ++E  ++EL ++   P G+LRI+  +     L+   L  F+  YP I+
Sbjct: 63  ALFLERCRRILCEVEAAELELSQTQQAPRGRLRISLPV--VGMLVTPALAAFMHRYPAIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +D+  +  D  +R  +P   S L+ R +        AAP YL     P   
Sbjct: 121 LDVDFSDRVVDVIDEGFDVVMRAAEP-TDSRLMSRPMGHYRQIVVAAPAYLAKRGTPRVP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +       ++ +  L   +        + +  N+ +S+M   + G GIA 
Sbjct: 180 ADLTGHACLQYRLPTTGKLQPWP-LKRSEADADYTLPNSMVCNTAISLMDIAISGLGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPD++ +   +   LV I+E+ +    T    +P +     KL+ F +F+    
Sbjct: 239 LPDFMARPAIERGELVPILEEHVQHQGTFRLLWPSSKHLAPKLRVFIDFMVEAV 292


>gi|146283440|ref|YP_001173593.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145571645|gb|ABP80751.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501]
          Length = 302

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 120/287 (41%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F +VA  GSF  AA + +++   + R++  LE  +G+KL +R  RGL+LT+ G +  
Sbjct: 7   LRSFVLVADCGSFAAAAHKENVTPVVMGRRLDALERHLGVKLMHRSTRGLSLTDLGEQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +     +        G L ++     G+  +  +   F   YPD+Q+   
Sbjct: 67  ERARGLLRDFDEVDASISHDRNSVRGHLVVSAPAAFGRRHIGPHAPAFQARYPDLQLSFN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+     D  IR+ + +   + +  +L         +P Y      P +++EL 
Sbjct: 127 FTDSVVDLVRHGYDMGIRIGE-VTDPNYVAVRLFPNRRVVCGSPEYFARHGTPTTLEELT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +HN + F     +  +   W    D      R++  L  N    +  +   G GI     
Sbjct: 186 EHNCLAFNL---QGGQQRGWTFLRDGRQVAIRVAGNLDCNDGELLFDWVKQGLGIGWRST 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + ++       LV ++++   P++ +   YP+      K++ F +++
Sbjct: 243 WEIQAELKRGELVTVLDEYALPAYDIQAVYPQQRYLPAKVRFFIDYL 289


>gi|115358785|ref|YP_775923.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284073|gb|ABI89589.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 303

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 134/293 (45%), Gaps = 6/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT 
Sbjct: 1   MDHLHAMRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLRVRLLQRTTRRVALTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +   + +   L+  +    ++   P G +R+        N +   L++F   YPD
Sbjct: 61  EGATYYERCTRLLADLDDAETLFDDAGAAPRGAIRVDLPERFALNKVIPALQDFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P 
Sbjct: 121 LRVVLSTTDRFVDLVADGIDCAVRVG-VLSDTSLVARRIGELSQINCASPAYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S  +L  H  + +         D+ +       +   ++ S + VNS  + +  C+ G G
Sbjct: 180 SPDDLPDHVAVGYFSSRTGRELDWEYADMDTGALQTVKMRSVVAVNSSQAYLACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   P   +    ++ +LV ++ +       V   +P +     +++ F +++
Sbjct: 240 LIQAPREGLAPLLEDGSLVEVLPEWHAEPLPVSVVFPNSRHLAPRVRIFVDWL 292


>gi|77458661|ref|YP_348167.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382664|gb|ABA74177.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 337

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 11/296 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF  V   GS +  A  L  + S +SR IS LE  +G++L  R  R L
Sbjct: 30  MSRRFDYLADVEVFVTVVEKGSLSAGAVFLGTTPSVVSRAISRLEARLGVQLLRRTTRRL 89

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT+ G      +   +  ++  +  +Q    + SG++R++     G   L   L  F  
Sbjct: 90  SLTDAGVLYLEQSRAAFGLIDDAERTIQGQDGELSGRVRLSVPTTYGHYRLPAMLARFTR 149

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P ++++L + N+++D+  +  D AIRL   +  S LI RKL    +   AAP YL+  
Sbjct: 150 QHPQVRVELSISNRNVDLVAEGFDLAIRLGA-LPDSGLIGRKLEDAGLCVVAAPDYLRRA 208

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYC 235
             P S+ +L +H  + F  ++P       WL        E  P  +    +  L I+   
Sbjct: 209 GTPQSVDDLQRHACLPF--VMPSTGRVGPWLFREQGEDREWLPSANIQVSDDVLGIVSLA 266

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             G GI    D+IV++      LVR++E     S      YP   + +   +A  +
Sbjct: 267 EQGLGICQTYDFIVRERIEGGRLVRLLEQSGGRSRPFSVIYPPHRQLSASARALID 322


>gi|329295686|ref|ZP_08253022.1| LysR family transcriptional regulator [Plautia stali symbiont]
          Length = 299

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 131/290 (45%), Gaps = 6/290 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  V   GSF  AA +L  S    S+ +S LE ++G++LF R  R L+ TE G   + 
Sbjct: 8   RMFVAVLEVGSFAGAAARLGTSSGQASKLVSRLEQQLGVQLFKRSTRALSPTEIGRAYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +     +QE++  P+G+L+I+     G  +L   L  F   YP I++ +  
Sbjct: 68  RVKTLLETFDALDATVQENARSPTGRLKISAPGTFGTAVLASVLVAFARHYPLIELDVNF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ++I  +  D AI + K +  SSLI R+L  + +   AAP YL     P   ++L  
Sbjct: 128 SDRAVNIVDEGFDMAISIGK-LDDSSLIARRLGEVPIRLAAAPGYLLQHGTPQHWRDLAT 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  I   D   +    + ++      +  P    L  ++  + +Q  + G GIA LP +I
Sbjct: 187 HQCI--SDTNFRDPWHWPFVTPFGDSVSMPIRGRLCFSNTEACLQAALAGLGIARLPGFI 244

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                    +V ++ED   P+  ++  YP A     K     +F+    R
Sbjct: 245 AAPALQRGEIVTLLEDFAPPAMGLFALYPPARHLAQKTHLLIDFLAEHFR 294


>gi|289670149|ref|ZP_06491224.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 344

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRISRELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRVGA-LPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
           L   EL  H  +            F W  +    + + P    +  N   ++    + G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K    +  + R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|209550967|ref|YP_002282884.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536723|gb|ACI56658.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 297

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE
Sbjct: 1   MDTLTRIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  S++  +++     ++E++ +  G+LRI+         +  +L +F    PD
Sbjct: 61  AGHTYYRSASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLIDFSRENPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H    P +L+   +  
Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKISDFRVHLCVTPDFLERHPDLA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              ++     I   D   +      +    +          ++VNS  + ++  + G GI
Sbjct: 180 HPSDISNVPFIV--DTNSRTQASIRFHNPDNTSFSVAVSGPMEVNSPHATLRAALAGIGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL+PD+I +   ++  LV +  D +     +Y  YP       K++ F +++
Sbjct: 238 ALIPDFIARKPIESGELVTLFNDYLPTDRGIYAVYPHRRYLPAKVRIFVDYL 289


>gi|89076138|ref|ZP_01162496.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89048148|gb|EAR53732.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 296

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 135/303 (44%), Gaps = 14/303 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +D +  F  VA S  F+ AA+QL  S S +SRQ+S LE  +G+ L  R  R + LT
Sbjct: 1   MN-SFDGIIEFVAVAESHGFSSAAKQLGCSTSHVSRQVSRLEERLGVALLARSTRQVNLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   ++    + + L+     L    +  SG LR++      +  +   L  F   YP
Sbjct: 60  DAGQLYYQQCRGLVNGLQQASESLNTQQITLSGTLRVSAAGAFAEEHVAPALMAFAKSYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I++  +++ ++   D  D AIR    ++ S L+ RKLV   M A A+  YL    +P
Sbjct: 120 DLTIEMDFNSRMVNFIEDGIDFAIRYGA-LKDSGLVARKLVDRPMAAVASQDYLTRYGKP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               +L +H+ I   +         +W+   +      R+    + N+  +++  C  G 
Sbjct: 179 THPSQLKQHSCIIANND--------HWIFEKEGNTINTRVHGRWKSNNSNAVISACEEGL 230

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA +P   +    D+ +L+ I++D      + +  Y        + +   +++     D
Sbjct: 231 GIAYMPKSSLAKGLDSGSLIPILQDFWGKGNSSWIVYQNQRFLPVRARLAIDYLIHYFSD 290

Query: 297 WKF 299
           W  
Sbjct: 291 WDL 293


>gi|239994575|ref|ZP_04715099.1| LysR family transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 299

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  +A  GSF+  AE  +++ S +S++I+ LE E+G +L YR  R LTLTE G  
Sbjct: 4   DDLILFAQIAEMGSFSKVAEANNITNSVVSKRIAKLEKELGTQLLYRTTRKLTLTEAGQA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +    V    +     +   S + SG ++++     G  LL   + EF  L+P + + 
Sbjct: 64  LKQGAMNVKASTQEAIDTISGYSEQISGHIKMSVPTISGDLLLADAVAEFCTLHPGLSVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +++  +  D  IR    ++ SSLI R  +  H     +P Y++    P + ++
Sbjct: 124 MSLDNRFVNLVEEGFDLVIRTGY-LEDSSLIARHFLDSHWVVCTSPDYIRRKGRPKAPED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + +        E      +               ++  ++ +  + G GIA +P
Sbjct: 183 LSFHNCLLYSYHTSGAREWE--FTSSQGSYTITVDGAFSSDNAGALRKAALAGRGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V ++     LV +  + +     VY  YP + + + K+K     I  +
Sbjct: 241 KCLVFEDLCNGTLVDLFPERVGKVLGVYAVYPYSRQPSRKIKLLIEHIRQR 291


>gi|227112818|ref|ZP_03826474.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 297

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 137/291 (47%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L LSQS++S  I GLE  +G++L  R  R +  TE G
Sbjct: 5   NFNDLISFLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL       +  +E+  + L +   +P+G +RI        ++L   LK FL+ YPDI 
Sbjct: 65  EKLAHSLGPHFADIESELVALGDMRERPAGNIRITAGEHAVDSILWPVLKPFLVNYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + +DN   DI +   D  IRL + ++   +  R    + M    +P+Y      P++ 
Sbjct: 125 VDITVDNALADIVLGRFDAGIRLGEQVEKDMIAVRVAPEMSMAVVGSPNYFARNPAPVTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W    +    + R+   L +NS    +    +G G+A
Sbjct: 185 QDLQHHRCINL--RLPTMGGIYAWEFEKNGREIKVRVEGQLTMNSLRQRIDAARIGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V+++     L+R++ +   P    Y  YP   ++T     F   +
Sbjct: 243 YVPEDSVQNDIASGRLIRVLTEWCPPFPGYYLYYPSRKQHTTAFSLFVEAL 293


>gi|115360518|ref|YP_777655.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285846|gb|ABI91321.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 305

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 144/303 (47%), Gaps = 12/303 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE+ +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLESRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTISEQAGEIYRRAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D A+R+   +  SSL+ R+L  +     A+P YL+    P   
Sbjct: 126 IDLHLSDASVDLIAEGFDAALRIAA-LPDSSLVARRLCAVTQFVVASPDYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGI 241
           +EL     +++       +    W  T D    EP +    L+V +  +++   + G  I
Sbjct: 185 RELADRPCLSYAYRARSAV----WRFTNDVGDEEPVMPTGPLRVTNADALLSTLLDGLAI 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD-- 296
           A LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++      D  
Sbjct: 241 AELPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVTALSDYFAEHLSDPV 300

Query: 297 WKF 299
           W++
Sbjct: 301 WRW 303


>gi|332529299|ref|ZP_08405261.1| transcriptional regulator [Hylemonella gracilis ATCC 19624]
 gi|332041216|gb|EGI77580.1| transcriptional regulator [Hylemonella gracilis ATCC 19624]
          Length = 308

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 133/290 (45%), Gaps = 5/290 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L+++  VA   SFT AA+ L L ++S+S+ +  LE  +G +L +R  R +  T+ G  
Sbjct: 5   EQLQIYTRVAELASFTQAADSLGLPKASVSQAVQQLEASLGTRLLHRTTRRVQTTQDGQV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  +L+  Q   +       G+LR+     + +  +   L EFL L+P+++++
Sbjct: 65  FYERCKELLAQLDDAQSLFRRGGEAVRGRLRVDMPSGVARQQVLPRLGEFLALHPELELE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  DC +R+   +  S+L+ R L  +     A+P YL     P ++++
Sbjct: 125 LSSTDRRVDLVREGFDCVLRIG-TLDDSALVARPLGYMVQLNCASPAYLAQHGTPQTLED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KH L+ +   +      + ++   D     P    L VN   +    C+ G G+   P
Sbjct: 184 LAKHRLVHYLPTLGGRPVGWEYVEQGDVR-NLPMAGALTVNDTAAYSAACMAGLGLIQAP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               +   +   LV ++     P+  V   Y    +   + + F N++  
Sbjct: 243 AIGTRPLIEQGLLVEVLPQWRAPAMPVSLVYANRRQLPRRTQVFMNWLAE 292


>gi|313647629|gb|EFS12079.1| uncharacterized HTH-type transcriptional regulator yhjC [Shigella
           flexneri 2a str. 2457T]
 gi|332750051|gb|EGJ80463.1| hypothetical protein SFK671_4706 [Shigella flexneri K-671]
 gi|332750207|gb|EGJ80618.1| hypothetical protein SF434370_4270 [Shigella flexneri 4343-70]
 gi|332751279|gb|EGJ81682.1| hypothetical protein SF274771_4726 [Shigella flexneri 2747-71]
 gi|332763476|gb|EGJ93715.1| putative transcriptional regulator LYSR-type [Shigella flexneri
           2930-71]
 gi|332996216|gb|EGK15843.1| hypothetical protein SFVA6_4878 [Shigella flexneri VA-6]
 gi|332996918|gb|EGK16537.1| hypothetical protein SFK272_4797 [Shigella flexneri K-272]
 gi|332997076|gb|EGK16692.1| hypothetical protein SFK218_5164 [Shigella flexneri K-218]
 gi|333012504|gb|EGK31885.1| hypothetical protein SFK304_4953 [Shigella flexneri K-304]
 gi|333013395|gb|EGK32767.1| hypothetical protein SFK227_4724 [Shigella flexneri K-227]
          Length = 299

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + +NLL   L EFL  +P 
Sbjct: 61  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   N+ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHNRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|239813686|ref|YP_002942596.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800263|gb|ACS17330.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 315

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 131/293 (44%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  V  +G+FT AA+ L L + +IS+Q+  LE  +  +L  R  R +T+T 
Sbjct: 1   MDQIQAMRLFVRVVEAGTFTRAADSLGLPKGTISKQVQALEKRLRSRLLNRTTRRVTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +  T  +   L+  +  +  +   P G+LR+     L + L+  +L EF   YPD
Sbjct: 61  DGAAYYDRTVRLLADLDDIESNMSNAQTNPRGRLRVDVGTSLARLLIIPHLAEFQARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L + ++ +D+  D  DC IR    +   SL+ R++ T      AA  Y+     P 
Sbjct: 121 IQMDLGVCDRMVDLIGDSVDCVIR-GGELHDQSLVARRVGTQEFVTVAAADYVARKGSPC 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGS 239
              E+  KH  + +    P   + F      D   I       L ++   + +     G 
Sbjct: 180 HPSEIGKKHMCLVY--FSPHSGKHFPLEFQKDGESISVAGPYRLGLDERNAYISSVRAGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           GI  +  +  +    N  +V+++ D   P+  VY  YP     + K++ F ++
Sbjct: 238 GIGQISSFQAQRYLHNGAMVQLLPDWTQPTQPVYVVYPPNRHLSAKVRVFVDW 290


>gi|52425450|ref|YP_088587.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307502|gb|AAU38002.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 298

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 131/292 (44%), Gaps = 4/292 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + LR F VVAR+GSFT A  Q+ +SQS++S  I G+E  + IKLF+R  R ++ T
Sbjct: 1   MKENLNDLRAFLVVARTGSFTKAGAQMGVSQSALSHSIRGIEERLNIKLFHRTTRSISTT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L++  S ++  ++    EL E     +G LRI          L      F   YP
Sbjct: 61  EAGEQLYQRLSPLFDDIDNELNELSEFRNAVTGTLRINGNEHAFYYALGDKFVRFSQKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L+ +N+ IDI  +  D  IRL   +    +  R    + M   A+P YL N   P
Sbjct: 121 EVNLELVAENRFIDIVAERFDAGIRLGSDVAKDMIAVRLTDKLPMCCVASPEYLANYGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCM-EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  +L +H  +         M  +F    +  R +       +  N    +  Y   G 
Sbjct: 181 KTPYDLTEHQCLLHRLSNGGVMNWEFIDPKSKGRILKVQPQGTISANGGRVLENYARSGL 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GI   P  +V+++     L+RI++         +  YP   +N+   KA   
Sbjct: 241 GILWCPLDMVEEDIRSGKLIRILQQWDMDYDGYHLYYPNRRQNSPLFKALVE 292


>gi|126452605|ref|YP_001065734.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|242316354|ref|ZP_04815370.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|126226247|gb|ABN89787.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|242139593|gb|EES25995.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 299

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 138/297 (46%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S V PSG LR+     +G+ ++   L EFL  YP 
Sbjct: 61  DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVELGVTDRAVNLIEERVDCVLRVG-TLCDSGLVARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H L+ +       +  + W+   +      R + + VNS  + +  C+ G G 
Sbjct: 180 TPADLERHRLVNYASPSNGRVAPWEWVEGDEVKRVALR-ARVTVNSAEAYIACCLAGLGP 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V  +     LV ++ D       +   YP     + + + F  ++    R
Sbjct: 239 IQIPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLDALLR 295


>gi|239503585|ref|ZP_04662895.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB900]
          Length = 296

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 134/293 (45%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR GSFT AA ++ +SQS++S  I GLE  +G+ L  R  R ++ T  G
Sbjct: 6   NYNDLYAFLMVAREGSFTKAAGKMGISQSALSHTIRGLEERLGMLLLTRTTRSVSPTAAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  S  + +++     L     +P+G +RI  +    + +L   LK+    YPD+Q
Sbjct: 66  ERLKQTISASFDQIDNELSLLTSFRDQPAGTVRINASSHAIREVLIPKLKKIAGEYPDVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI  +  D  +R    +    +  R    + M   A   Y +    P S 
Sbjct: 126 VELTANSGMVDIVAERFDAGVRFGSRVADGMIAVRISPDVKMVVIATQAYFEKYGIPQSP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I F       +  + W    D    + +I      N    I++    G G+A
Sbjct: 186 KDLVSHQCIGFRLTTQGSV--YAWEFVKDGQESKIKIQGQWIFNESYDIVEAVRAGFGLA 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +P+ +++++    NL++++E+        +  YP   + +  L+   + +  
Sbjct: 244 YIPEDLIREDIKEGNLIQVLEEYSIQFPGYHLYYPHRRQLSPALRLVIDVLRE 296


>gi|77458589|ref|YP_348094.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382592|gb|ABA74105.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 301

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 135/290 (46%), Gaps = 10/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F +V  +GS T AA QL  ++S +S++I+ LE  +G  +  R  R   LTE G   +
Sbjct: 1   MQSFVMVVDTGSITEAARQLGTAKSMVSQRIAQLEKRLGSIVLER-GRQARLTEAGEVFY 59

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +  ++E  +  +        G LR+A  +      L   L  F + YP++++ + 
Sbjct: 60  RYCVRILSEVEEAEDAVLAFQSSLRGSLRLAAPMAFSIRYLTPILSSFAVRYPELRLDIE 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D++ +++  +  D AIR+ + +  SSL+ + +        A+P YL     P + QEL 
Sbjct: 120 FDDRHVNLHEERYDAAIRIGE-LPDSSLVAKTITANRHIICASPDYLAAHGTPQTPQELS 178

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + + +  P  M    W   V+  +   R+ C ++ N+   +M+    G G+A+LP 
Sbjct: 179 EHFAMLYVNREPHGM----WTLPVNNALESFRVRCRMRTNNGHQLMEAAKAGMGLAILPT 234

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++      +  L  ++         +   Y  + + + KL+A  +F+  +
Sbjct: 235 FLAAQAIVDGELQEVLAPYAPRGGNISAVYRRSQRASPKLQALTDFLCEQ 284


>gi|15889748|ref|NP_355429.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157664|gb|AAK88214.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 143/293 (48%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +G+F+ AA  L++ +++++  +  LE  +   L  R  R + LT 
Sbjct: 1   MDQLSAMRVFTRVVETGNFSRAATALNMPKTTVTNMVQALEAHLQTTLLNRTTRRVMLTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   S++  ++E     +  + V+PSG+LR+         ++  +L EF   YP 
Sbjct: 61  DGALYYERASQILSEIEELDGSMSSAQVQPSGRLRVEMAGVFADLVVIPHLCEFYQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L + ++ +D   +  DCA+R+   ++  SLI RK+  +    +A+P Y++N   P 
Sbjct: 121 IRLDLGVGDRLVDYIAENVDCALRVG-VLRDQSLIARKVGELRFETFASPSYIENFGMPR 179

Query: 182 SIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L+ +H  + + +     +   ++   V R +       + VN   + +   + G G
Sbjct: 180 EPEDLEKEHYSVGYLNATTGQIMPASFDNGV-RSVELTPNYVVSVNDSRTYLNAALAGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP ++V+D      LV ++ +    +  +Y  YP+    T K++ F +++
Sbjct: 239 IVQLPVFMVRDALSRGELVPVLSEWRREAMPIYVVYPQTRHVTNKVRVFVDWL 291


>gi|218676611|ref|YP_002395430.1| Transcriptional regulators, LysR family [Vibrio splendidus LGP32]
 gi|218324879|emb|CAV26637.1| Transcriptional regulators, LysR family [Vibrio splendidus LGP32]
          Length = 300

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 149/298 (50%), Gaps = 6/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V   GSFTHAAE L++++S++SR++  LE  +G++L  R  R L LT +
Sbjct: 1   MDLNAVTVFTQVVDCGSFTHAAEALNMTKSTVSRKLDELEQHLGVRLITRSTRSLVLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++ + ++   +   ++E+  +     G L +   ++LG  +L   +  FL  +P++
Sbjct: 61  GERFYQSSMQMQEIMNQAELEVSANQDLIRGPLNVVLPVELGHQVLAQYIHSFLKEHPNV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L N+++DI  +  D   ++ + +  SSL+ R L T      A+P YL+   E  +
Sbjct: 121 TMNLELTNREVDIIAEGIDLYAQIGE-LVDSSLVSRYLTTSKRTLVASPEYLEQFGEIKT 179

Query: 183 IQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L     ++   +   + +  ++        I       L+VN+  + +  CV G G+
Sbjct: 180 PSDLKSPFRMVEVVNKAAR-LPKWHLQLEAGESILIDLPCQLRVNTITACLTACVDGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP++I +++     L+R++ +   P  +V   Y +      + K F +++    ++
Sbjct: 239 AVLPEFICREHFKTGKLIRLLPEYEMPEVSVSLVYADRQLMPKRKKVFIDYLLTAFQN 296


>gi|260549391|ref|ZP_05823610.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407500|gb|EEX00974.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 305

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 13/300 (4%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    +F +VA   S + AA  L  + S +SR I+ LE ++GI+LF R  R L
Sbjct: 1   MSRQFDHLADVEIFLIVAEKLSISTAAIDLSTTPSVVSRTITRLEKKLGIQLFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++I+     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERLVQGEQLQISGKIKISVPTTYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR  + + +S+LI R L    +   A+P YLK  
Sbjct: 121 QYPDIQIEVSISNRNVDLIAEGFDLAIRQGQ-LPNSTLIARPLEHAPLKLVASPAYLKRM 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQV-NSYLSIMQ 233
             P ++ EL+ H  I F   +P   +   W      +D+ I     + + V    L ++ 
Sbjct: 180 GIPKNLDELNHHQCIAFE--LPSNGKVTPWFFKDIDIDQEIQWIPTNRILVKEDILGVVS 237

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G GI    ++IV +      L  ++E     +      Y +    +   +AF +F+
Sbjct: 238 LAENGLGICQSYEFIVNEKIQQGKLQPLLETYAGHTRPFSLLYAQHKHMSSATRAFIDFL 297


>gi|311103237|ref|YP_003976090.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310757926|gb|ADP13375.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           1 [Achromobacter xylosoxidans A8]
          Length = 307

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 137/299 (45%), Gaps = 8/299 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA +  LSQ+++S+ IS LE  +   LF+R +R +TLTE G
Sbjct: 6   DLEGWAIFAKVAETGSFAKAAAEFSLSQATVSKSISRLEARMKTTLFHRTSRSMTLTESG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  + E+ E S    GK+R++  +  G   L   L  F+   PD+ 
Sbjct: 66  YAALERAARILEEGEAVESEVTEKSSSLRGKIRLSAPMSFGVTHLAPMLPPFMQANPDVA 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   +K  D+  +  D A+R+   +  S+L+ R+L ++ +    AP Y K    P   
Sbjct: 126 LEIEFSDKQADLVSERFDLALRISN-LVDSTLLARRLCSVRILLVGAPSYFKRAGRPKHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  + +  +  +    + +         +     L VN+  ++      G G+AL
Sbjct: 185 KDLAHHTALQY--MYARNGSSWRFRHEKHGDFSQSLPVHLNVNNAEALTPALQAGMGLAL 242

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK--ARDW 297
            P+++      +  L  +M+D       ++   P   +   +++AF  ++  +  A  W
Sbjct: 243 QPEFLAWKDLQSGALETVMDDWQVDPIALHIVTPPGRRRPARVQAFIEYLAERLTAEPW 301


>gi|170682485|ref|YP_001745791.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|300936732|ref|ZP_07151630.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|170520203|gb|ACB18381.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
 gi|300458147|gb|EFK21640.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
          Length = 323

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + +   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTVVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|161521851|ref|YP_001585278.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345901|gb|ABX18986.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 335

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 142/294 (48%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF +V R  SF+ AAEQL +S + +S++I+ LET++G +L +R  R +T+TE G
Sbjct: 34  NLEDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRIAMLETQLGTRLLHRSTRRVTVTEAG 93

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + 
Sbjct: 94  ERVFAHAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLN 153

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I    LI R+L   +    A+P YL     P ++
Sbjct: 154 VRLDLFDRLVDVAAEGYDLDVRIGDEIAD-HLIARRLAANYRVLCASPDYLARRGMPRTL 212

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ +   +           L      +       L  N     +Q+ + G GI L
Sbjct: 213 ADLASHDCLAIKERDHPFGVWR--LNVRGDTVTVKVGGALSTNHGEVAVQWALAGRGIVL 270

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              +      D+  L R++ D + P+  ++  Y E +  + K++   +F+    
Sbjct: 271 RSIWEAGPLIDSGALCRVLPDAVQPA-NIWAVYTERVAASAKVRVCVDFLAQAL 323


>gi|187734166|ref|YP_001882210.1| LysR family transcriptional regulator [Shigella boydii CDC 3083-94]
 gi|187431158|gb|ACD10432.1| transcriptional regulator, LysR family [Shigella boydii CDC
           3083-94]
 gi|332095848|gb|EGJ00856.1| hypothetical protein SB359474_1698 [Shigella boydii 3594-74]
          Length = 299

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + +NLL   L EFL L+P 
Sbjct: 61  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|331685176|ref|ZP_08385762.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
 gi|331077547|gb|EGI48759.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
          Length = 323

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++GI+L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGIQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL  +P 
Sbjct: 85  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLASHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGI 262

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V+       L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVRKALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|260753021|ref|YP_003225914.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552384|gb|ACV75330.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 355

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA S SF+ AA  L LS+ ++S+ IS LE  +G  L +R +R L+LTE G
Sbjct: 6   DFEAWAIFAKVAESNSFSKAALALGLSKGTVSKAISRLEERMGTSLLHRTSRHLSLTESG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  + E+ E +  P G +RIA+ I  G   L   L EFL  YP + 
Sbjct: 66  RVALTRATHLLEEGEAIEAEVSEDANNPYGVVRIASPISFGIQALGPILPEFLAEYPRVG 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D A+R+   +  SSL  R+L +I     A+  YL     P   
Sbjct: 126 IDLHLSDSRVDVIAEGFDIALRMGD-LPDSSLRARRLFSIRRPVVASRAYLDRHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H +I +  +    +  F+     +  +       + V++    M   + G GIA 
Sbjct: 185 RELSQHEVIIYSHIEHPHIWRFSHPE--EGRVEVKVDGRVHVDNGDVAMGPLLSGIGIAC 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            P++ +     +  L  +  +   P + ++   P       +++A   F+  + +
Sbjct: 243 QPEFFIWQALRDGVLEELFPEWTIPPYGMFLLTPPGRARPARVRALLGFLAQRFQ 297


>gi|254248204|ref|ZP_04941524.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124874705|gb|EAY64695.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 303

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA  GSFT AAEQL L + ++S  +  LE  + I+L  R  R + LT 
Sbjct: 1   MDHLQAMRTFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   L+  +   +++   P G +R+        N +   L +F   YPD
Sbjct: 61  EGATYYERCVRLLADLDDVETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P 
Sbjct: 121 LRVVISTTDRFVDLVADGIDCAVRVG-VLSDTSLVARRVGEMAQINCASPAYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S  EL  H  + +         D+ +       +   ++ S + VNS  + +  C+ G G
Sbjct: 180 SPDELPDHVAVGYFSSRTGRELDWEYADMDSGELHAVKMHSVVSVNSSQAYLACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P   +     + +LV ++ +       V   +P       +++ F +++  
Sbjct: 240 LIQAPRDGLAPLLADGSLVEVLPEWNAAPLPVSVVFPTGRHLAPRVRIFVDWLAE 294


>gi|289662181|ref|ZP_06483762.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 325

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 138/293 (47%), Gaps = 6/293 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           S D  + LR F  VA  GSFT AA+ L L ++S+S  +  LE  +G +L +R  R + LT
Sbjct: 22  SMDTMESLRAFLRVAELGSFTRAAQTLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  ++ + ++   ++  Q   Q    +  G+LR+  +  + ++ +   L  FL  +P
Sbjct: 82  GDGTAFYQRSRDLLDDMDELQSMFQRERSQLRGRLRVDMSAGIARHFVIPALPAFLAQHP 141

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q+++   ++ +D+  +  DC +R+   ++ ++L+ R L    + + A+  YL     P
Sbjct: 142 QLQVEISGTDRRVDVVREGFDCVLRVG-TLEDTNLVARPLGAFRIVSCASAQYLARRGTP 200

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L +H+L+ +   + +    F +       +  P    + VN+    +   + G G
Sbjct: 201 HCLDDLAQHDLVHYVPTLGQRSPGFEYYDGQAYQLL-PMRGPVTVNNGDGYLAAALAGLG 259

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   P   ++ +     LV I+ ++      V   Y +      +++AF +++
Sbjct: 260 IIQAPASPLRAHLHSGALVEILPNLAVEPMPVTLLYAQRRHLPQRVRAFMDWV 312


>gi|262395350|ref|YP_003287203.1| transcriptional regulator LysR family [Vibrio sp. Ex25]
 gi|262338944|gb|ACY52738.1| transcriptional regulator LysR family [Vibrio sp. Ex25]
          Length = 300

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 142/301 (47%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D   +FY +   GSF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G
Sbjct: 3   NTDDYIIFYHLIEQGSFSAAARHMSLTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    VY  + T +  +       SG ++++     G+ +L   + EF   YPDI 
Sbjct: 63  RAFFTHAKAVYQAVATAEESIVGLGKNLSGNIKVSVPTISGELILPQVINEFNQKYPDIN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P   
Sbjct: 123 IDMDLDNRFVDIVNERFDLAIRTG-VLPDSSLIARKLVDANWIVCASPQYLAKHGIPKQP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q LDKHN + +        E        D          L  N+   +    +LG GI  
Sbjct: 182 QALDKHNCLVYSYQETGAHEWA--FKDGDEVYQITVDGNLCTNNSSVLRNVALLGQGIIY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KARDWK 298
           +P  +V ++     L+++ +D       +Y  YP   +   K+K F + ++   ++++ +
Sbjct: 240 VPRVLVYEDLKQGRLIQLFKDETAKCLGIYAVYPYTRQQPEKIKIFIDHLYTSFQSQNHR 299

Query: 299 F 299
           F
Sbjct: 300 F 300


>gi|217979336|ref|YP_002363483.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
 gi|217504712|gb|ACK52121.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 299

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 136/294 (46%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L VF  V    S   AA +L LS  ++S+ ++ LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEGLAVFAKVVEMRSIAGAAAELGLSSPTVSKALTRLERRLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L     ++    E  +  L   S  P G +R+A  +  G   +   L +FL  YPD+ 
Sbjct: 66  RELTDRARQLVADAEAAETALIAQSSTPRGLVRLAAPMSFGLREVAPILPDFLTRYPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L++  +D+  +  D A+R+   +  SSL+ R+L     +  AAP YL+    P   
Sbjct: 126 IDLHLNDALVDLIGEGFDAALRVGL-LPDSSLVARRLCATPRYTVAAPSYLERHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H  + +  L    +  F                 L+ N+  ++M   + G G+  
Sbjct: 185 AHLSDHVCLGYTYLAAPDVWRFK--NQKGEEASVRPKGQLRANNGDALMPALIAGLGVGD 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP++IVK+   +  L R++ + +TP  +++   P       +++   +F+  + 
Sbjct: 243 LPEFIVKEALADGRLERVLANWLTPQGSLFLVTPPGGPRPARVELLGDFLAERL 296


>gi|153006496|ref|YP_001380821.1| LysR family transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030069|gb|ABS27837.1| transcriptional regulator, LysR family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 342

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 144/295 (48%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  VA +GSF  A  +L +S  +++R ++ LE  +G++LF R  R L LTE G 
Sbjct: 17  LHEMEVFVAVADAGSFAKAGARLRISPPAVTRAVASLERRLGVRLFNRTTRSLRLTEAGL 76

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +   LE  + E    S  PSG L + T++  G++ +   + EFL  +P +  
Sbjct: 77  RFLESAKPLLGDLEEAEREAAGDSAAPSGHLTVTTSVTFGRSAMAPVVTEFLRNHPRVTA 136

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L ++ +++  +  D A+R+ + +  SSL+ R++  +     A+P YL     P S  
Sbjct: 137 SLMLVDRVVNLVEEGIDVAVRIGQ-LPDSSLVARRIGEVQRVLVASPEYLAKHGAPASPA 195

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H++I F  L+P     F   A   R   +PR    +VN   + ++    G GI + 
Sbjct: 196 ELKRHSVIAFTGLMPNREWRFVDGAESSRIAVQPR---FEVNDAFAALEAAEAGDGITIS 252

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P +IV +      L  ++     P  +V   +P++     K++AF  F   + +D
Sbjct: 253 PSFIVAERIAAGRLAPVLAAYTAPPVSVQLVHPQSRLVAPKVRAFVEFAGPRLKD 307


>gi|296156200|ref|ZP_06839039.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893706|gb|EFG73485.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 318

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 143/298 (47%), Gaps = 9/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LRVF  VAR  SF+ AAE L +S + +S++I+ LET +G +L +R  R + +TE G
Sbjct: 8   DLGDLRVFCEVARKSSFSAAAEALSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++    ++   ++    ++  +   P GKLRI+++   G+  +   L  F   YP + 
Sbjct: 68  ERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQLS 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I +  LI R+L + H    A+P YL     P  +
Sbjct: 128 VRLDLFDRLVDVAGEGFDLDVRIGDEI-APHLIARRLASNHRVLCASPGYLARHGAPRQL 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  H  +   +          W  TV       +++  L  N     +++ + G GI 
Sbjct: 187 ADLSSHACLAIKERDHPFGL---WRLTVRGETASIKVTGPLSTNHGEVAVEWALAGRGIV 243

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L   + V+   +   L +++ +V  P+  ++  YP  L  + K++   +F+      W
Sbjct: 244 LRSMWDVRPLLETGQLQQVLPEVTQPA-NLWAVYPARLAQSAKVRVCVDFLSEGFAQW 300


>gi|261365131|ref|ZP_05978014.1| transcriptional regulator, LysR family [Neisseria mucosa ATCC
           25996]
 gi|288566565|gb|EFC88125.1| transcriptional regulator, LysR family [Neisseria mucosa ATCC
           25996]
          Length = 298

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 143/293 (48%), Gaps = 14/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AAEQL +S +  S+ +S LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAAEQLDISTAMASKHVSHLENSIKAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +    NL+   L E+   YP++ + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGNLIGTWLAEYRERYPEVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ K + S SLI + L  I     A+P YL    +P + +E+ 
Sbjct: 127 LDNRHVDLIAEGFDLALRVAKTL-SPSLIVKPLAQIQFVLLASPEYLAKHGKPQTPEEVM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I           D   L    R  GE  I      +Q ++ L I +    G+GIA 
Sbjct: 186 RHPAIL------PTYTDQRNLEITHRETGEKSILTLNPVIQSDNTLMIRELVRAGAGIAY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P +  + +     LV ++ +    +  +   Y +    + K+++F +F+  K
Sbjct: 240 QPLWSARQDLKEGRLVSLLPEYRVRTEQLNAVYVDRAFLSAKVRSFIDFLNEK 292


>gi|167587391|ref|ZP_02379779.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 313

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 131/296 (44%), Gaps = 5/296 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFMRVVDAGSFTAAAQQMNSTTAYTSRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++     LGQ+     +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHCFTSLGQHYTVPAVSRYRERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L  +  D+  +  D AI + + +  S L+ ++L   +    A+P YL+    P 
Sbjct: 121 VHVDLTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPRYLERHGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L +H  +          +D+                  +VN   ++      G GI
Sbjct: 181 QPQDLARHTCLGMV-APGFHYDDWTLSGPNGDEHVALSSPPFRVNVAEALAVAVREGMGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP Y       N + VR+M +  +    +Y  YP       K++ + +F+  + 
Sbjct: 240 GVLPIYSAIAGLRNGHFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLRDEL 295


>gi|115351324|ref|YP_773163.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115281312|gb|ABI86829.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 324

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AAE L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 23  DLEAWAIFARVAETGSFAKAAELLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 82

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 83  ELLRDRAIRLLADAELIESEACAQALEPHGLVRVNAPMSFGLRHLSPLLPAFLERYPRVD 142

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     A+P YL+    P   
Sbjct: 143 IDLVLTDNIVDIVSGGFDIAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLERRGRPTHP 201

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L++H  +T+ +L       F   A+    +G      ++ N+   I    + G G+AL
Sbjct: 202 RDLEQHVCLTYTNLPTPEHWRFRNPAS-GEDVGVSVQGRIRTNNADVIAPALLAGHGLAL 260

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++  D   +  L  +M +       V    P  +    ++     F+
Sbjct: 261 QPEFLAWDALQSGELEEVMPEWKIADVNVNLVTPPGMLRAARVTVLLEFL 310


>gi|123442718|ref|YP_001006695.1| Lys family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122089679|emb|CAL12531.1| putative Lys-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 310

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 132/298 (44%), Gaps = 10/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  +GSF+  A QL +S S+ISR +S LE  +  +L  R  R L L+E G 
Sbjct: 10  LSEMAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++ +  + + +   +      + S +P G +R++    +G+ ++  ++ EFL  Y  I +
Sbjct: 70  EVFKRCNAMLNAANSVMEISGQYSQEPEGLIRVSVPKAVGRFVVHPHMPEFLQRYSKIDV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QLILD++ +D   +  D  IR+        ++ R+L+ I     A P YL     PL   
Sbjct: 130 QLILDDRYVDFIDENVDLVIRITDQ-PPPGMVGRQLMNIEHLLCATPEYLAAQGTPLHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ I  G+        F       + I          N     +   +   GI  L
Sbjct: 189 DLAQHSCIYLGETPGDARWKFR---QGTKVITVAVKGRYAANHTGVRLDAVLQHIGIGSL 245

Query: 245 PDYIVK---DNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P +  +       LV+++ +     + S  ++  YP       KL+ F ++I  + RD
Sbjct: 246 PYFTARTTLQQGQLVQVLPEWRFISSYSGGLWLLYPPTRYLPAKLRVFIDYIVGRLRD 303


>gi|87120162|ref|ZP_01076058.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86164864|gb|EAQ66133.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 299

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  V   GS + A++  ++  SSISRQI  LE E+ ++L  R  R + LTE G K 
Sbjct: 6   RLHYFNAVVELGSISAASQLYNVQPSSISRQIIALEKELSVRLLSRTTRNIGLTEAGRKY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +  +L+  +  + +    P G LR+  T+  G++++   +  FL  YP I+++L
Sbjct: 66  YEYSQRIVAELDEAKRVVNDLQESPKGLLRLNLTVGFGESVVLPLIPLFLEQYPAIKVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  K +D+  D  D AIR  K ++ SSLI  KL+  +    A+PHYL    E +S  +L
Sbjct: 126 DLTEKVVDLVEDNIDIAIRSGK-LEDSSLIATKLMDNNFIPCASPHYLSKHPEIVSPDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            KH  I +G          +W    ++         + VNS     Q  +  +GIAL+P 
Sbjct: 185 IKHQCIHYG-----YSGWQSWYLLANKKQSLNLEKTISVNSVNGQKQLILNHAGIALIPQ 239

Query: 247 YIVK---DNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
           + VK   +  +L++++            + Y  Y        K++ F +FI
Sbjct: 240 WAVKSELEEKSLLQLLPQYTFSPNEHLTSTYGIYLNRQFIAPKIRVFLDFI 290


>gi|91778619|ref|YP_553827.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691279|gb|ABE34477.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 313

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 146/294 (49%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LRVF  VAR  SF+ AAE L +S + +S++I+ LET +G +L +R  R + +TE G
Sbjct: 8   DLGDLRVFCEVARKSSFSAAAEALSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++    ++   ++    ++  +   P GKLRI+++   G+  +   L  F   YP + 
Sbjct: 68  ERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSGRYPQLS 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I +  LI R+L + H    A+P YL+    P  +
Sbjct: 128 VRLDLFDRLVDVAGEGFDLDVRIGDEI-APHLIARRLASNHRVLCASPGYLERHGAPRQL 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  H  +   +   +      W  TV       +++  L  N     +++ + G GI 
Sbjct: 187 ADLSSHACLAIKE---RDHPFGLWRLTVRGETASIKVTGPLSTNHGEVAVEWALAGRGIV 243

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L   + V+   ++  L +++ +V  P+  ++  YP  L  + K++   +F+  +
Sbjct: 244 LRSMWDVRPLLESGQLQQVLPEVTQPA-NLWAVYPARLAQSAKVRVCVDFLSEE 296


>gi|56460872|ref|YP_156153.1| LysR family transcriptional regulator [Idiomarina loihiensis L2TR]
 gi|56179882|gb|AAV82604.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR]
          Length = 303

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 13/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +  F  VA   SFT AA QL LS + +SR I+ LE  + ++L YR  R ++LTE+G 
Sbjct: 4   WQGISEFAAVAEQQSFTAAARQLRLSVAQVSRNIAALEHRLQMQLLYRSTRSVSLTEEGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L      +Q+ + +P G +RI   +  G+  +   L +FL +YP+ ++
Sbjct: 64  LYLPHCQHLVASLRDADQAIQQRTQQPQGLIRITAPVYYGERFIAPLLNDFLHIYPECRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+ +D+     D AIRL + + +  L  RKL +       +P Y +    P  I 
Sbjct: 124 DFQLTNEQVDLIEGSYDVAIRLGQ-LGNPRLRARKLGSRRHFVVGSPAYFEEFGRPQDIN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            LD H   T             W   V+  +   R  S L  N+ L++    + G G+A+
Sbjct: 183 ALDAHRCFT--------GTVRQWRFQVEGKLETVRPESYLHCNNGLALRDAAMKGLGLAM 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPDY V D+     L  ++ D   P   ++  YPE  +   K++   +++
Sbjct: 235 LPDYYVTDSLANGQLEEVLADYRQPDDGIWALYPENRQVIPKVRVLLDYL 284


>gi|260870247|ref|YP_003236649.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
 gi|257766603|dbj|BAI38098.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
          Length = 323

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+HAA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSHAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|90022419|ref|YP_528246.1| LysR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952019|gb|ABD82034.1| LysR, substrate-binding [Saccharophagus degradans 2-40]
          Length = 298

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 137/295 (46%), Gaps = 13/295 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D +  +++F  VA   SFT AA+ L  + +++S+ I+ LE ++G +L +R  R L L
Sbjct: 1   MATDKFVAMKIFRRVAELKSFTLAADDLDTTPATVSKHIAFLERDLGTRLIHRTTRRLNL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           ++ G    + T E+   LE  ++E Q     P G +R+   +  G   L   +  FL  Y
Sbjct: 61  SDAGLTFLKRTQELLDALEEAELEAQGYQTSPKGSIRLNVPMSFGLTHLTEAVDSFLRRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI I L   ++ +D+     D AIR+R  +  SSL  R L        AAP YL    E
Sbjct: 121 PDIDIDLQFSDRLVDLVEQGVDLAIRVRHSLADSSLQARALKQSRNVVCAAPSYLAQNPE 180

Query: 180 PLSIQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                +L  HN + +     PK  E  N    V            + +S L+I +  + G
Sbjct: 181 IRCPDDLVHHNCLLYTLHDRPKVWELGNQEVIVG--------GNFRTDSSLAIRECLIAG 232

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +GI  +P ++V+++     LV ++ D     +TV+  +P   K   K++     +
Sbjct: 233 AGIGFIPRFLVENDLENQKLVPLLTDFPAKPYTVFALFPPGRKQPAKVRLLVAHL 287


>gi|84386758|ref|ZP_00989783.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84378286|gb|EAP95144.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 305

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  +EQ +L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSKVSEQNNLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  MLHGAKNVKQAAQEAMDAVSGFGENVSGHIKMSVPTISGDLILADAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N+ +D+  D  D  IR    ++ SSLI R ++       A+P Y+    +P+  ++
Sbjct: 124 MSLNNRFVDLVDDGLDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIAKNGKPMQPKD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-----PIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +HN + +        E + +L + D                  ++  ++ +  + G G
Sbjct: 183 LVEHNCLQYAYQTTGASE-WQFLHSKDGFTDNDKYIVRVSGSFSTDNATALRKAALGGHG 241

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A +P  +V  +     LV I  D++     +Y  YP   +   K+K     I  +
Sbjct: 242 VAYVPRCLVYHDIRNGQLVDIFPDLVGKKLGIYAVYPFTRQPPNKIKLLIEHIRTR 297


>gi|114564032|ref|YP_751546.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335325|gb|ABI72707.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 313

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 133/291 (45%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G+
Sbjct: 5   LEPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGN 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++
Sbjct: 65  LLYLQGEELLRDAEQAVSSVHNLNDATRGVLKVGISQSFGTMHIIPALPAFMARHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y+         +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLVASPGYIAQHGNISRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +HN + +     +  E   W         E  +S   +V++  ++    V G GI  
Sbjct: 184 QLVEHNCLVY---QGEWHEHSMWQFKKGEDYCEIGVSGNFRVDNAPALKSAAVSGLGIVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV ++ D        +   YP       K+ AF +FI
Sbjct: 241 LASYLMEDEIAQGTLVPLLPDWQLTHNLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|253999813|ref|YP_003051876.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253986492|gb|ACT51349.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 305

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 154/300 (51%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L +F  V   GSF+ AA++LH+ +S++SR+++ LET++G +L  R  R LT+T
Sbjct: 1   MKLEANDLLLFARVVDEGSFSRAADRLHIPKSTLSRRMAALETQLGERLLLRTTRKLTVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ +     +V  ++E T    Q   V+PSG+LR++   D G ++LQ  L EF + YP
Sbjct: 61  DFGNAVLAHAHQVTAEVEATLALTQHRQVEPSGRLRLSMPGDFGIDILQALLAEFAMRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +++ +  + +D+  +  D AIR+      +SL  R++ T     YAAP YLK    P
Sbjct: 121 AISLEMDISPRRVDLIGENFDLAIRMGDLPDDTSLAARRIATFETGLYAAPAYLKKRGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
              + L +H+ +    L+ +  E   W    ++   +   I  +  NS   +++  + G 
Sbjct: 181 HEPEALMEHDALH---LLTRRGEPMLWQLKRNQAQWQGTPIGKVSANSPAILVRMAISGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA+L +   +       LVRI+ED   PS T +  +P       + + F + +  +  +
Sbjct: 238 GIAMLGEPFAEPYVKAGELVRILEDWHLPSVTAWAVFPGRRLMPARTRVFLDALMARFAE 297


>gi|299069388|emb|CBJ40654.1| putative transcription regulator, LysR family; putative ttuA
           activator [Ralstonia solanacearum CMR15]
          Length = 306

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 129/292 (44%), Gaps = 6/292 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A +GS + AA  L ++  ++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 10  ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++     L ++  +P G LR+  T+  G+  +   + E++  YP + +QL
Sbjct: 70  LEHARRILGEIDDLDQLLTQAKGRPRGLLRVNATLGFGRRHIAPAISEYVRQYPGVDVQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  IR  +P   + +I RK+        AAP YL     PL+  +L
Sbjct: 130 QLTADPPPLNEDAFDVCIRFGEP-PDARIIARKVAPNRRLLCAAPDYLHRHGTPLAPADL 188

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +HN I    G          +      R         L  N     + + + G GI + 
Sbjct: 189 ARHNCIGIRQGSDAYGVWRLTSGKGAKRRTETVHVRGNLTTNDGEIAVNWALEGHGIVMR 248

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++ V+       LV+++    TP   +Y  Y +  + + +++ F +F+  +
Sbjct: 249 AEWDVERYLRGGQLVQVLPLYATPEADIYAVYLQRHQLSPRIRLFVDFLAGR 300


>gi|289662995|ref|ZP_06484576.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 344

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRVGA-LPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
           L   EL  H  +            F W  +    + + P    +  N   ++    + G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K    +  + R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|157963014|ref|YP_001503048.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848014|gb|ABV88513.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 297

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 130/299 (43%), Gaps = 12/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R+F  V   GSF+ AAE L+++ SS++R I  LE +    L  R  R L LTE G 
Sbjct: 2   LSAMRIFIKVVELGSFSKAAEVLNMAPSSVARNIDSLEQDFNAVLLKRSTRQLLLTEAGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++ +  ET +  L +   +P G LRI+     G+  +   L +FL  YP ++I
Sbjct: 62  LFLEGARKLVNDEETLKTSLSKRDSQPEGILRISVFEGFGRVKICPILPDFLAQYPKVKI 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ LDN+ +D+  +  D AIR+    Q SSL  R L+       A+  YL     P   +
Sbjct: 122 EIDLDNQLVDLHSENVDIAIRIGNA-QDSSLNARMLMANQTSLCASAKYLAQFGTPKKPE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  HN +       +    F      ++    P    L       I++  +   GI  L
Sbjct: 181 ELQHHNCLLLDRDRQRTYWHF---KKGNQYKKVPVQGNLTSRGGTPILEAAIHHGGIVQL 237

Query: 245 PDYIVKD---NPNLVRIMEDVIT-----PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             ++++D   + +LVR + D         S  +Y  Y         ++AF +++    +
Sbjct: 238 SSWMMEDLIQDGSLVRCLPDWTPSLSEQSSGDIYALYRGGKHMRPVIRAFIDYLVKALK 296


>gi|21242232|ref|NP_641814.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107655|gb|AAM36350.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 344

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRVGA-LPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
           L   EL  H  +            F W  +    + + P    +  N   ++    + G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K    +  + R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|209517706|ref|ZP_03266543.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501881|gb|EEA01900.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 314

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 135/302 (44%), Gaps = 9/302 (2%)

Query: 1   MSFDWDKL-----RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L      +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R
Sbjct: 1   MQRKFDDLLLGSIELFCLAAELGSFTLAANAASVTPAAVSRSVARLEERLGVRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G +      +   +L   + E+      P+G LRI+     G   +   L  F
Sbjct: 61  QIRLTDAGRRYFEQCRQALSQLMDAEREVTGEQTTPAGVLRISMPTPYGHYRVLPLLPAF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP +Q++  L N++ID + +  D AIR R P   S+L+ RKL    M   A P YLK
Sbjct: 121 RERYPQVQVETHLSNRNIDFADEGFDLAIRGRAP-ADSNLVARKLEDAEMVVVATPAYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P ++ +L  H  I F          + +  + +      R S       L+ +   
Sbjct: 180 RAGVPKTVADLQAHECIQFDLPSSGRHLAWTFEDSHEDRDVLTRGSFATSGDALAGVTLA 239

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G+G+     ++V+D+     LV ++ +    +      YP A   T +++AF +F+  
Sbjct: 240 RAGAGLFQTYRFVVEDDLREGRLVEVLREAGGRTRPFILLYPHARYLTSRVRAFVDFLVE 299

Query: 293 KA 294
           + 
Sbjct: 300 QL 301


>gi|78047094|ref|YP_363269.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|294626581|ref|ZP_06705179.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|325928736|ref|ZP_08189906.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|78035524|emb|CAJ23170.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|292599148|gb|EFF43287.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|325540904|gb|EGD12476.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 344

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRVGA-LPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
           L   EL  H  +            F W  +    + + P    +  N   ++    + G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K    +  + R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|307304416|ref|ZP_07584167.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306902618|gb|EFN33212.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 307

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L  F  VA   SFT AA +L ++QS++S  I  LET +G++L  R  R + +TE G
Sbjct: 5   DFNDLLWFLAVAEERSFTRAAAKLGITQSTLSHTIKRLETRMGLRLLTRTTRSVAVTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +     +      L     KPSG ++I  +    ++L+   L+  LL YPDI+
Sbjct: 65  ERLLRSLAPRISAIRDEIAALMAFRDKPSGSVKITLSDHALESLVWPKLQPVLLEYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  DN   +I  D  D  IRL + ++   +  R      + A A+P YL +   P   
Sbjct: 125 LELSRDNGFRNIVEDGFDAGIRLGESVEKDMIAVRIGPDWRLLAVASPDYLADRPLPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL +HN I            + W    +      R+   L  NS   ++   + G GIA
Sbjct: 185 QELIQHNCINSRQATGGG--HYVWEFEKNGQELRVRVDGQLTFNSSYPMVDAALKGHGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+ +V  +     LV ++E    P    Y  YP    N+   K   + +
Sbjct: 243 YLPEDLVAGHIAAGRLVALLEPWSPPFAGYYIYYPSRHHNSPAFKVIVDAL 293


>gi|253689059|ref|YP_003018249.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755637|gb|ACT13713.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 310

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 138/297 (46%), Gaps = 9/297 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A+ GSFT AAE+L L++S++ + +S LE  +G+KLF R  R L+LT  G +  
Sbjct: 17  INAFVTTAQQGSFTAAAERLGLTKSAVGKSVSRLEDRLGLKLFQRSTRRLSLTPDGERFL 76

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE  + EL     +P+G+LR+      G+  +   L      YP++ + + 
Sbjct: 77  ASCQSAMDILEQAEAELTSHLCQPAGRLRVDLPAAFGRQRILPILLNITRRYPELALTVT 136

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              + +D   D  D  IR+ +   SS L+ R+L T  +   A+P YL N  EP+S++ L 
Sbjct: 137 FSERFVDPIEDGIDLVIRIGELADSSGLVARRLTTQKLVICASPDYLLNQGEPVSVEALS 196

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H+ +    +  +  +  +WL   D  +       +  +     +++   + G G++ LP
Sbjct: 197 QHHCV----VGFRRNQPISWLLKDDTGQIARYTPPATHEFADGDAMLAAVLAGCGLSQLP 252

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            ++V    ++  L  ++         +   +P++ +   K++   + +   A D + 
Sbjct: 253 RWLVGKYLESGELKEVLVSHAGGEMPISALWPKSRQLLPKIRHVVDTLVKAAEDGQL 309


>gi|163859097|ref|YP_001633395.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262825|emb|CAP45128.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 307

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 131/290 (45%), Gaps = 6/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F ++ + G+ + AA +L L+  ++S +++ LE  +G++L  R  R + +T++G   
Sbjct: 6   DLAFFSLLVKHGNLSAAARELGLTPPAVSTRLANLERRLGVRLLNRTTRRVNVTQEGELY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE  +  +  +  +P G LR+  T   G+  +   + +F   +P++++Q+
Sbjct: 66  LAEGGRILADLEALERSVASARAQPRGLLRLNATFGFGRAHIVPAVSDFTRQFPEVEVQM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +++  +  D A+R  + I  + L  RK+ +      A+P YL+   EP +  EL
Sbjct: 126 QLTDRPVNLLDEGFDVAVRFGE-IPDARLTARKIASNRRLLCASPQYLRAHGEPRTPGEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I   +           L    R         L  N   S +++ + G GI +  +
Sbjct: 185 QRHRCIVVRENDVAYGTWH--LRAGQRVETVKVRGPLSSNDGQSALEWALDGHGIVMRSE 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +       +  L  ++ D  TP   ++  YPE L    K  AF +F+  +
Sbjct: 243 WETAAYLRSGRLRHVLPDWSTPPADIHALYPERLNLPAKTVAFVDFLVQR 292


>gi|300689818|ref|YP_003750813.1| transcription regulator protein, lysR family (aaeR) [Ralstonia
           solanacearum PSI07]
 gi|299076878|emb|CBJ49491.1| putative transcription regulator protein, LysR family (aaeR)
           [Ralstonia solanacearum PSI07]
          Length = 298

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 124/296 (41%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +G+FT AA QL +S   + + +  LET +G +L  R  R  +LT+
Sbjct: 1   MDKLRGMETFVAVVDAGNFTEAATQLEMSAVMVGKYVRELETRLGARLLQRSTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  ++   +  ++    +PSG LR++     G  ++      F   +P 
Sbjct: 61  AGRVFYEDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPTTFGACVIAPLAATFQQAHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+ +D++ +  D A+R+   +  + L+ + L    M   AAP YL     P 
Sbjct: 121 VRVELDLSNRMVDLADEGFDLAVRVGA-LGDADLVAKPLCAYRMVICAAPEYLARHGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  ++    +     +   L   DR            N    +    + G+G+
Sbjct: 180 TPADLPAHRCLSH---MVWNSRNAWQLPGWDRTTPWRNDPAFSCNDGHGLRMAAIAGAGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L P+ +V ++     LVR+++        V+  Y +      KL  F   +  + 
Sbjct: 237 LLQPEVLVAEDLASGRLVRVLQPYAPEPRPVHLVYRQDRSPLPKLTGFVAHLLERV 292


>gi|261250747|ref|ZP_05943321.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260937620|gb|EEX93608.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 294

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 132/299 (44%), Gaps = 12/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ +  F  VA S  F+ AA+QL  S S +SRQ++ LE  +G+ L  R  R ++LTE G
Sbjct: 3   SFEGINEFVTVAESSGFSAAAKQLGCSTSHVSRQVTRLEERLGVALLARSTRMVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++   E+   L+    +L     +  G LR++      +N +   L EF   +P++ 
Sbjct: 63  QAYYQQCKELVIGLQQANEQLSTQQTQLRGVLRVSAAGVFAENYVAPALMEFAKQHPNLT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  +   ++   D  D AIR  + +  S L+ RKLV   M    + +Y+     P   
Sbjct: 123 VELNFNTSMVNFIEDGFDFAIRYGR-LNDSGLVARKLVDRPMMVAVSQNYIDEHGLPTHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  HN I           D       D+P+ E ++    + N+  +++Q C  G GIA
Sbjct: 182 EQLRHHNCIV-------SNTDVWLFEADDKPLDEVKVQGRWKSNNVHTVLQACEKGLGIA 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            LP    +D   +  LV I+E       + +  Y        + +   +F+      W+
Sbjct: 235 YLPKSSFRDAILSGRLVPILEPYWGSGNSSWIVYQNRRFLPLRARLAIDFLIDHFSKWQ 293


>gi|91794313|ref|YP_563964.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91716315|gb|ABE56241.1| transcriptional regulator, LysR family [Shewanella denitrificans
           OS217]
          Length = 303

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 140/289 (48%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA ++   +S+ISR+++ LE ++G++L  R  R ++LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAAREVGQPKSTISRKVAQLEEQLGVRLLQRDTRNISLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +    +  ++E  +  ++ +    SG LR+A  +   Q+++      F+ LYP+I+
Sbjct: 63  ALFFQHCDSISQEIEAAKAIIENTHNDISGALRVAIPVSFSQDVIASLCSNFMRLYPNIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+QSS L+ + L        A+P Y+KN   P + 
Sbjct: 123 LDIQFTDNDVGLVGEGYDIAIKYG-PLQSSDLVAKLLFERQPILVASPSYIKNHGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL +HN I  G  +   +     L    R         ++VNS   + +  +   GIA+
Sbjct: 182 QELAQHNGILLGTTLSAPIWP---LGKGGRKTMATFNRKVRVNSASMVKRLAIDAYGIAM 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L +   K    +  LV I+++     F VY  Y    +    + AF  F
Sbjct: 239 LSNTSCKQELASGALVPILQEWPMEPFKVYGVYSSRRQLATNISAFLEF 287


>gi|171322415|ref|ZP_02911229.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171092264|gb|EDT37643.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 313

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 134/296 (45%), Gaps = 5/296 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+     P 
Sbjct: 121 VHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVDAHGAPH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H  +          +++         +        +VN   ++      G GI
Sbjct: 181 TPADLEQHVCLGMV-APGFHFDEWALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP Y       + ++VR+M +  +    +Y  YP       K++ + +F+  + 
Sbjct: 240 GGLPLYSAIGGLRSGSIVRVMPEYRSHLMNIYALYPSRQYLDAKIRTWVDFLRDEL 295


>gi|330820755|ref|YP_004349617.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327372750|gb|AEA64105.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 310

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 143/296 (48%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LH+S++++++ +  LE  + +KL  R  R L +T 
Sbjct: 1   MDRFDAMQAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVKLLNRTTRRLNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L ++S  P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAAFYERALRLLADMDDAETSLSDASALPRGRLRVDVPSPLARLILVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +D+  +  DC +R    +   SL+ R++  + +  YAAP YL+    P 
Sbjct: 121 IQLDMGVSDRRVDLIGENVDCVVR-GGELSDQSLMARRVGDLQLGVYAAPAYLERMGRPA 179

Query: 182 SIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL+   H ++ F       +  +      +R   + R   L V+   + +   + G 
Sbjct: 180 HPRELENTGHRIVGFRWARTGRVFPYAMQRGDERISVQGR-HVLAVDDGNAYLAAGLAGL 238

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LPDY+    + N  L+ + ED    +  +Y  +P     + KL+ F ++I  
Sbjct: 239 GVLWLPDYMARAPRANGELLPLFEDWRLDTMPLYVAFPPNRHVSAKLRVFIDWIAE 294


>gi|85703918|ref|ZP_01035021.1| Putative LysR-family transcriptional regulator [Roseovarius sp.
           217]
 gi|85671238|gb|EAQ26096.1| Putative LysR-family transcriptional regulator [Roseovarius sp.
           217]
          Length = 295

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 130/296 (43%), Gaps = 12/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR F  VA +G  + AA +L +S+S +SR++  LE E+G++L  R  RG  LTE 
Sbjct: 1   MDIEDLRTFVDVADAGGISAAARRLGVSKSIVSRRLFKLEGELGVQLLLRTTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       + +  +LE  + E    + +  G+LR+A  +  G       L E     P +
Sbjct: 61  GITFREHAARIGAELELAR-ETILPTGELRGRLRVAMPLTFGPTHFAPVLAELSKRNPKL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+     ++ +DI  +  DCAIR+   ++ S+LI +++  I     A+P Y+     P +
Sbjct: 120 QVHATYSDRFVDIIAEGFDCAIRVGY-LEDSNLIAKRIGPITGKLVASPDYIAEHGVPET 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H  +  G            L    R I        + ++ +++M  CV G GI 
Sbjct: 179 LDDLATHRALMQGTETWH-------LTDGGRTITFQPQGIFKADNGIALMTACVAGLGIG 231

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LPD I   +     LV +M +   P    Y   P       KL+   + +    +
Sbjct: 232 YLPDCITHQHVASGRLVEVMPNHQPPPAAAYVIRPPGQHPARKLRVLTDMLIEHFK 287


>gi|254252634|ref|ZP_04945952.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124895243|gb|EAY69123.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 307

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 133/293 (45%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA+ L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAKAADLLGVSQPTVSKAIARLEKRLGAMLLYRTSRRLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAERIESEASAHALEPHGLVRVNAPMSFGVRHLAPVLPAFLERYPHVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     AAP YL     P   
Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LNDSSLRSRRLCAVRRPLVAAPAYLDRHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++++H  +T+ +L       F   A+    +G      ++ N+   I+   V G G+AL
Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRHTAS-GEEVGVSVQGRIRTNNADVIVPALVAGHGLAL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P+++V D      L  +M D       V    P  +    ++     F+  +
Sbjct: 244 QPEFLVWDALQRGELEEVMRDWKIADINVNLVTPPGMLRAARVTVLLEFLADR 296


>gi|325914016|ref|ZP_08176372.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325539785|gb|EGD11425.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 344

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MTHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRVGA-LPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
           L   EL  H  +            F W  +    + + P    +  N   ++    + G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K    +  + R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|255065372|ref|ZP_05317227.1| transcriptional regulator, LysR family [Neisseria sicca ATCC 29256]
 gi|255050197|gb|EET45661.1| transcriptional regulator, LysR family [Neisseria sicca ATCC 29256]
          Length = 298

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 143/293 (48%), Gaps = 14/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AAEQL +S +  S+ +S LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAAEQLDISTAMASKHVSHLENTIKAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +    NL+   L E+   YP++ + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGNLIGTWLAEYRERYPEVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ K + S SLI + L  I     A+P YL    +P + +E+ 
Sbjct: 127 LDNRHVDLIAEGFDLALRVAKTL-SPSLIVKPLAQIQFVLLASPEYLAKHGKPQTPEEVM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I           D   L    R  GE  I      +Q ++ L I +    G+GIA 
Sbjct: 186 RHPAIL------PTYTDQRNLEITHRETGEKSILTLNPVIQSDNTLMIRELVRAGAGIAY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P +  + +     LV ++ +    +  +   Y +    + K+++F +F+  K
Sbjct: 240 QPLWSARQDLKEGRLVSLLPEYRVRTEQLNAVYVDRAFLSAKVRSFIDFLNEK 292


>gi|254361728|ref|ZP_04977864.1| possible LysR family transcriptional regulator [Mannheimia
           haemolytica PHL213]
 gi|153093254|gb|EDN74260.1| possible LysR family transcriptional regulator [Mannheimia
           haemolytica PHL213]
          Length = 296

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 59/302 (19%), Positives = 137/302 (45%), Gaps = 14/302 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q  +S    S+ ++ LE  + ++L  R  R +T TE
Sbjct: 1   MDKLNAISLFCKVIETQSFTQAAQQAQISLPMASKLVAQLEEHLNVRLLQRTTRKITPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+     +   +    GK+ ++  +D G   +   L +F+  YP+
Sbjct: 61  AGLLYYQQCLPILNELKEADASVSNINSTLQGKITMSVPMDFGSRFIAPYLGKFMEDYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + +   ++ +D+  +  D  +R+   +  SS++ +K+   H+   A+P YL    EP 
Sbjct: 121 LALHIEFSDRRVDVIAEGFDLVLRIGS-LADSSIVAKKIADSHLVLVASPDYLARFGEPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++ L + + + + +  P+        +   + +       +  N+  +++Q    G GI
Sbjct: 180 GLEALVERDCLLY-EYHPQWQ-----FSQQGQKMQIKPQGKIYSNNGYALVQMAKAGLGI 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKAR 295
             +P +++K    N  L+ IM  +      +   YP     + K++   +F   +  + +
Sbjct: 234 INIPKFLIKHELKNGELIPIMPFLTQEPLQISLLYPNRRYLSPKVRILIDFFTQLMQEQK 293

Query: 296 DW 297
           ++
Sbjct: 294 EY 295


>gi|24372428|ref|NP_716470.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24346402|gb|AAN53915.1|AE015528_8 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 303

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE E+G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEELGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPGYLKTRGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H+ I  G      +     L    R         ++VNS + + Q  +   GIA+
Sbjct: 182 KELSDHSGILLGTSRSAPIWP---LGKGTRKTMVSFQRKVRVNSPIMVKQLALDDFGIAM 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L +   K    N  LV I+++     F VY  Y    +    + AF +F   +
Sbjct: 239 LSNSACKTELANGQLVPILQEWPMEPFKVYGVYSSRRQLATNISAFLDFFVKR 291


>gi|191170396|ref|ZP_03031949.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|300976740|ref|ZP_07173559.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|190909204|gb|EDV68790.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|300308477|gb|EFJ62997.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|324014187|gb|EGB83406.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
          Length = 323

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARSLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|104782192|ref|YP_608690.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95111179|emb|CAK15899.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 303

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 134/295 (45%), Gaps = 12/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F   A++GSFT AA  L L++S++ + I+ LE  + ++L  R  R L+LT++G 
Sbjct: 6   FGDIAAFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++   L+  +  + +   KP+G LR+   +  GQ  +   L  +L  +P+++ 
Sbjct: 66  VAFERWRQILDDLDEVETAMAQRRNKPTGTLRLTAPLSFGQRHVLPILDAYLKQWPELRA 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  D A+R+  P + S L+ R +        A+P YL+    P    
Sbjct: 126 DIRFTDRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPEYLRQHGTPQVPA 185

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L  H+ I F       P        L   + P        L ++S  +++     G G+
Sbjct: 186 DLYGHDKIAFLAGEKASPWRFRTEEGLHLCEEP------GRLNIDSSEAMLDGARAGFGL 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             LP YI  D+     LV ++ D   P+  +   YP     + +++ F + + ++
Sbjct: 240 IHLPTYITGDDLRSGALVEVLHDFRPPADPIRIVYPSRRHLSPRVRGFIDLLVVR 294


>gi|71282301|ref|YP_267739.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71148041|gb|AAZ28514.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 299

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 142/299 (47%), Gaps = 14/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   ++L  F  V  +GS +  +    +  SSISRQ++ LE E+G++L  +  R   LT
Sbjct: 1   MS-SLNRLLYFNSVVETGSISQTSRIFDVQPSSISRQLAVLEQELGVRLLNKTTRNTGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G K +  +  +  + +  +  + +    P GKL I+ T+  G++++   + +F+ LYP
Sbjct: 60  EAGHKYYEYSQRIVSEFDEAKRVVNDLQEVPKGKLNISMTVGFGESVVLPLISKFISLYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I I L L  + +D+  +  D AIR  + +  S++I R+L   +    A+P YL N   P
Sbjct: 120 NIVIDLELTERVVDLVEENIDVAIRSGR-LPDSTMIARQLTLNNFLLCASPQYLINHSIP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L  H  I +           +W    +        + + VNS     Q  +  +G
Sbjct: 179 HAPEDLKDHQCIRYN-----YSRWKDWFLMAEEKTKLSLNNTISVNSVNGQKQLVLNDAG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFL 292
           +AL+P + V+   ++ +L+++M +     +      Y  Y +    + K + F +F+  
Sbjct: 234 LALIPLWAVRSELEDGSLIQVMPEYTFSPYEELSATYAIYLKRELISPKTRVFLDFLVE 292


>gi|217422905|ref|ZP_03454407.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217393813|gb|EEC33833.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 305

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 142/292 (48%), Gaps = 9/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE G
Sbjct: 6   NLDDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++  T ++   ++    ++  +   P G LRI+++   G+++L   L  F   YP + 
Sbjct: 66  ERVYAWTEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLGFNERYPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I    LI ++L T +    A+P YL     P  +
Sbjct: 126 VRLDLFDRLVDVAGEGFDLDIRIGDEIPD-HLIAKRLATNYRVLCASPGYLARYGTPRQL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  +   +   +      W  TV       ++   L  N     +Q+ + G GI 
Sbjct: 185 ADLGAHQCLAIKE---RDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L   +       +  L R++ +   P+  V+  YP  L  + K++   +F+ 
Sbjct: 242 LRSIWEAGPLLASGELRRVLPEASQPA-NVWAVYPARLAASAKVRVCVDFLV 292


>gi|260553726|ref|ZP_05825997.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260405126|gb|EEW98625.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 303

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 146/293 (49%), Gaps = 5/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEEQLGVVLFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGALFYEHSRRALSEIQNAAALLDQGKINATGRLRMSVPVLFGQLFAAPLIVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++ +D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRTVDLVEEGFDLCIRIGALPDTTQLVAKPIGQHRMLLCASPDYLNKAGSL 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++LD H  I   D     ++ +        P+     + L +N   +I    + G G
Sbjct: 181 EHIEDLDIHTTI--ADPHFGQIKKWQLQKENSEPLFIKPKAKLLLNDLQAIKNAALAGGG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LPD++++    +  LV+++E + + +F ++  +P       K +   +++
Sbjct: 239 IAWLPDWLIQNELQDGTLVQVLETMSSIAFPIHLVWPTLPFMPLKTRLAIDYL 291


>gi|212637173|ref|YP_002313698.1| regulatory protein LysR:LysR substrate-binding [Shewanella
           piezotolerans WP3]
 gi|212558657|gb|ACJ31111.1| Regulatory protein, LysR:LysR, substrate-binding [Shewanella
           piezotolerans WP3]
          Length = 303

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 142/289 (49%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +  + +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAQGFSQAARETGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +  + +  ++E  +  ++ +    SG LR+A  +   Q L+      F+ LYP+++
Sbjct: 63  ALFFQHCTSISDEIEAAKATIENTHNDVSGSLRVAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDVGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPSYLKTHGTPANP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL  H+ I  G      +     L    R         ++VNS + + Q  +   GIA+
Sbjct: 182 QELATHSGILLGTSRSAPIWP---LGKGTRKTMVNFKRKVRVNSAVMVKQLVMDDFGIAM 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L + + K+   + +LV I+++    +F VY  Y    +    +  F +F
Sbjct: 239 LSNSVCKNELASGSLVPILQEWPMEAFKVYGVYSSRRQLATNISVFLDF 287


>gi|126737988|ref|ZP_01753718.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126721381|gb|EBA18085.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 302

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 139/300 (46%), Gaps = 12/300 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD   L +F  VA  G+   A E+  LS ++ +++I  LE ++G KL  R  R ++LT
Sbjct: 1   MPFDLKSLELFVRVAALGALGRAGEEFRLSPTATTQRIQMLEADLGTKLLNRTTRAVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G         V   +E  +  +     + +G+LR+ T+   G++ +   + EFL  YP
Sbjct: 61  PDGELFLEHAQRVLDSVEEARAAVSTVKGRVTGELRVTTSASFGRSQIVPYIGEFLDQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L++  IDI     D AIR+   + SS+L+ RKL        A+P YL+    P
Sbjct: 121 DVTLKLDLNDSIIDIVEQGYDLAIRVGM-LNSSTLLARKLAPNPRLLVASPDYLERFGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
               +L  H  I  G+     ++D          I E R+      N   ++    + G 
Sbjct: 180 QQPSDLKSHRCIVLGETRNWALKDEA------GNITEVRVGGNFTTNFGEAVTDTTLQGM 233

Query: 240 GIALLPDYIVKDNP---NLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI L   + + D+     L+R++    ++P + V+   P +     +++AF +F+  + R
Sbjct: 234 GIGLKSVWDISDHLKARRLIRVLPSHTVSPEWQVWAVRPASRTTPPRVQAFTSFLEERFR 293


>gi|167035241|ref|YP_001670472.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861729|gb|ABZ00137.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 298

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 126/301 (41%), Gaps = 8/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V    SF  AA +L +S ++++R +S LE ++G+KL  R  R + LTE
Sbjct: 1   MDQIHLMKVFVAVGELESFAAAARRLDISPAAVTRAVSALEDQLGVKLLLRTTRSVRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +    T  +   +          +  P G L +   I  G+  +   +  +L  YP+
Sbjct: 61  AGGRYLEDTRHILASIHEANEAAAGINATPKGDLAVTAPILFGKKFVMPCIVRYLQQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +     ++ +++  +  D A+R+  P+  S L   ++  +     A+P YL     P 
Sbjct: 121 VDVSAYFLDRVVNMVEEGMDVAVRIG-PLPDSGLKALRVGRVRRMLCASPDYLARHGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H +I   +L P+    F      D P        L V S    +     G GI
Sbjct: 180 HPSDLAGHAVIGTTNLSPRAGWRFG---VTDEPTLVRMKPRLTVTSNDGAIAAASGGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A L  Y V +   +  L  I+ +     + ++  + E+   + K++AF + +    R  +
Sbjct: 237 ARLLSYQVAEELASGQLQVILAEYEEAPWPIHVLHRESKYGSAKVRAFIDMLAQALRAQQ 296

Query: 299 F 299
            
Sbjct: 297 L 297


>gi|300717319|ref|YP_003742122.1| regulatory protein, LysR-family [Erwinia billingiae Eb661]
 gi|299063155|emb|CAX60275.1| Regulatory protein, LysR-family [Erwinia billingiae Eb661]
          Length = 300

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 140/289 (48%), Gaps = 10/289 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L LS S++ + ++ LE ++G++LF+R  R +TLT +G      
Sbjct: 9   VFVQVAETRSFVSAGRLLGLSASAVGKNVARLEEKLGVRLFHRSTRSITLTAEGLLFLAR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++E   +EL ++   PSG+LRI+    L  +L+   L +F+  YP+I + L   
Sbjct: 69  CRRIIAEIEAAHLELSQARSNPSGRLRISLP--LVSSLMLPVLGDFMRQYPEISLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+  +  D  IR+ +P   S L  R+L        A+P YL     P S  +L +H
Sbjct: 127 DNLVDVIQEGFDAVIRMGEP-ADSRLSARRLGYFGSVLVASPAYLLEKGLPQSPDDLLQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + +       +E  NW   +   +  P    +  N+  + + + + G GIA LPD+ V
Sbjct: 186 SCLHYRFSHTGKLE--NWPLRLAGHLTLPV--SMVCNNIETRVCFALRGLGIAWLPDFAV 241

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +       LV ++++ I    T +  +P +   + K++   +F+    R
Sbjct: 242 RALIAEGELVSVLDEFIDWQGTFHILWPASQHASPKIRVLVDFLTAHFR 290


>gi|327188651|gb|EGE55859.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 299

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 130/300 (43%), Gaps = 9/300 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  V   G F+ AA +L++S + +   +  LE  +G++L  R  R ++LTE
Sbjct: 1   MDRLTSLAVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +S++  +L+         S  P G L++ T+  +    L     E++ LYP 
Sbjct: 61  TGKYYYERSSQILAELDEADRTASALSTTPRGTLKVYTSGSIV-RFLLPVFSEYMELYPS 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +   +  + +D+  D  D  IR   P   SSLI RKL         +P Y+ +   PL
Sbjct: 120 ISVDFSVGERMVDMIEDGYDLVIRTLPP--DSSLIARKLTPWRHMLVCSPAYVDSHPLPL 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E+  HN + +        +++ +     RP        +  N+   +    + G G+
Sbjct: 178 KPAEIADHNCLQYAYY--PYGDEWRFEDGDGRPESVKIGGNVVSNNAEMLRFLTLNGRGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            L P ++V D+     L+RIM D     FT+   YP       K++ F + +  +  + +
Sbjct: 236 FLAPSFVVFDDIAEGRLIRIMPDYRPVEFTINAVYPNRSHLPTKVRLFIDLLAERFAEHR 295


>gi|325276470|ref|ZP_08142232.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324098392|gb|EGB96476.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 304

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 130/298 (43%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L  R  R L+LT 
Sbjct: 1   MDRLNAMRVFVTVVDLGSQSAAADHLQLSRPVVSRYLAELEDWVGARLMQRTTRKLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +       Q  +Q+    P G LRI+ +   GQ  L   +  ++  YP 
Sbjct: 61  AGQETLPRCRHLLDLAGELQAAVQQPDDAPKGALRISVSTSFGQAQLVDAIAAYVQRYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L + ++ +++  +  D AIR    +   +LI R+L        AAP YL     P 
Sbjct: 121 VKVELQMLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLSVCRSVVCAAPAYLHEHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL +HN +T                   + +  P    +  N  +++ +  + G+GI
Sbjct: 180 QVEELSRHNCLTHAYFGHSLWH----FDVAGQQVSVPVAGNISANEAMTLQKAALAGAGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP Y   D      LVR++         +   Y         L++  +F+  + +D
Sbjct: 236 AMLPTYQAADALRKGELVRLLAHARPRELNLNAVYTSRKHMPATLRSMLDFLVERFKD 293


>gi|289627430|ref|ZP_06460384.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646129|ref|ZP_06477472.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866700|gb|EGH01409.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 303

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L +R  R L LT
Sbjct: 1   MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLHRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H         L     +L     +P G+LRIA   D         + +FL  YP
Sbjct: 61  QAGEDFHERCVGAVDGLMDAAEQLVSHREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 LVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDTMVASPAYIAAHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+Q L  H  ++     P     +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGPDAKMHEVQMASRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K RD
Sbjct: 238 GIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLRD 297


>gi|167648289|ref|YP_001685952.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167350719|gb|ABZ73454.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 302

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/303 (26%), Positives = 147/303 (48%), Gaps = 9/303 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D++   VF  VA +GSF  AAEQL+LS++++S+ ++ LE  +G  LF+R +R L+L
Sbjct: 1   MKLPDFEAWAVFAKVAETGSFVRAAEQLNLSKATVSKAVTRLEQRLGATLFHRTSRRLSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G       + +  + ET + E    S  P G +R+A  +  G   L   L EF  LY
Sbjct: 61  TEAGRASLDRATNMLREGETLEAEASAQSATPRGLVRVAAPMSFGIAHLGPALPEFFALY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ I+L L ++ +DI  +  D A+R+   ++ SSL+ R+L  + +    +P Y      
Sbjct: 121 PEVSIELSLSDQLVDIVEEGFDLALRISA-LEDSSLLARRLCPVRLMLVGSPAYFDKHGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++L  H+ + + +   +  + + +             S L+VN+   +    + G 
Sbjct: 180 PGHPKDLTAHSGLFYTN--SRTKDVWRFEHAEHGQYAVSLRSPLRVNNADILRPSLLAGL 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK--A 294
           G+A+ PD++  ++     L  ++ D   P   ++   P +     +++    F+  +  A
Sbjct: 238 GLAMQPDFLTWEDVKSGLLEEVLADWAPPPIALHLVTPPSTIRPARVEVLIAFLAKRMAA 297

Query: 295 RDW 297
             W
Sbjct: 298 APW 300


>gi|90022872|ref|YP_528699.1| regulatory protein, LysR [Saccharophagus degradans 2-40]
 gi|89952472|gb|ABD82487.1| LysR, substrate-binding [Saccharophagus degradans 2-40]
          Length = 298

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 135/295 (45%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R +  V ++GSF+ AA +L+LS+  +SR +S LE ++G++L  R  R +++T 
Sbjct: 1   MDKLTCMRAYCQVVKAGSFSAAARELNLSKVLVSRYVSELEADLGVRLLQRTTRKMSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTI-DLGQNLLQGNLKEFLLLYP 120
           +G      +  V   +   +  ++  +   +GKLR+A          L   + EF   +P
Sbjct: 61  EGQAYFERSLVVLQDVTELEDAIKNKTGAITGKLRLAAPTEAFSVEHLMPLIGEFAQAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++  + + ++  DI  +  D AIR+ K ++ SSL+ RKL  + +   A+P Y+ +    
Sbjct: 121 SVEFDIEMSDRYTDIVDEGYDLAIRIGK-LKDSSLVARKLADMQVILCASPQYIASNTPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L+ H  I   + +      F    TV     +P      +N+  +     + G G
Sbjct: 180 SAPEDLNTHTHIVDSNFLNGANWPFKQQETVVNIKPQP---MFLINNSPAARALLLQGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + + P + V++      LV+++ +       +Y  Y      + K+  F + +  
Sbjct: 237 VGVCPSFTVREQLQTGELVQLLPEWELSKGGIYVVYSHRKHLSAKVSGFVDALVE 291


>gi|206559768|ref|YP_002230532.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035809|emb|CAR51700.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 307

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 135/293 (46%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA+ L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAKAADLLGVSQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAELIENEASAQALEPHGLVRVNAPMSFGLRHLSPVLPAFLERYPRVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  S+L  R+L  +     A+P YL     P   
Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LNDSTLRSRRLCAVRRPLVASPAYLDRRGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++++H  +T+ +L       F   A+ D  +G      ++ N+   I+   V G G+AL
Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRHPASGD-EVGVSVHGRIRTNNADVILPALVGGHGLAL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P+++V D      L  +M D       V    P  +    ++    +F+  +
Sbjct: 244 QPEFLVWDAMQRGELEEVMSDWKIADINVNLVTPPGMLRAARVTVLLDFLAER 296


>gi|146308120|ref|YP_001188585.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576321|gb|ABP85853.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 309

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 126/289 (43%), Gaps = 8/289 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  V + GS T AAE L +S++ +SR ++ LE   G++L +R  R L+LT  G ++  
Sbjct: 8   QVFVEVVQRGSQTAAAEALEMSRAMVSRYLAELEHWAGVRLLHRSTRKLSLTAAGEQMLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    E  Q   Q     P G LRI  +    Q  L   L+EF   YP + I L++
Sbjct: 68  QCREMLALAENMQALGQGLDDAPRGTLRITCSQSFAQAWLVHALQEFTERYPQVSIDLLV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++     D A+R+   +   +LI R+L        A+P YL     P   QEL +
Sbjct: 128 GSEALNLVEARIDLALRITNQL-DPNLIARRLGVCRSVVCASPAYLARHGTPQHPQELAR 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +++        E                   L  N  + +++  + G+GI+L P Y 
Sbjct: 187 HNCLSYAYFGRSLWE----FERQGEASAVSVAGSLSANESMVLLEAALAGAGISLQPLYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           V        LV+++ D       ++  Y    +    ++   +FI  + 
Sbjct: 243 VAGLLREGRLVQLLADYRPAELGIHALYGTRRQMLPAMRLLLDFIAERL 291


>gi|17549367|ref|NP_522707.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431620|emb|CAD18297.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 298

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 137/291 (47%), Gaps = 8/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF      GSF+ AAE L +S   + + + G+E  +G++L  R  R  +LT+
Sbjct: 1   MDRLTSMAVFVKAVELGSFSAAAEVLQMSSQLVGKHVQGIEQRLGVRLLNRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +  +  ++E  +   +E+   P+GKLRI   +  G + L   L E++  YP+
Sbjct: 61  FGRAFYERSKIILAEVEIAESLAEETRAVPTGKLRINAPVSFGMHTLAQRLPEYMKRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++ L N+ +D+  +  D   R+ + +  S LI R L    +   AAP YL+      
Sbjct: 121 VEVEMTLSNRTVDLINEGYDAVFRVGE-LSDSGLIARPLAPYRLVLCAAPAYLEGRPPLT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +HN + F     +    F+     D  +  P  S L V+    ++   + G G+
Sbjct: 180 TPWDLRQHNCLGFAYTELRTNWTFD---GPDGRVVVPVSSRLMVDHGEPLLCAALAGMGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L P  +V+    + +LV ++      +  ++  Y    + T KL++F +F
Sbjct: 237 LLQPLELVRSALADGSLVGVLPQYEPLTRPMHVLYAPDRRVTPKLRSFLDF 287


>gi|307255082|ref|ZP_07536900.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259519|ref|ZP_07541244.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306861955|gb|EFM93931.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866455|gb|EFM98318.1| LysR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 297

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 134/302 (44%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF +VA +GSFT  AE+L LS+  ++R ++ +E     +L  R  R ++LT+
Sbjct: 1   MDRITAIQVFLMVAETGSFTATAERLVLSRPKVTRAVALMEEWFNARLLQRTTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       + +      +  G LRIA+    G   L   ++ FL  +P 
Sbjct: 61  AGEQAVEYCKKMTELTSAIEQDFLTQRGELRGSLRIASNAAFGSTHLLNAIRTFLAKHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQLIL +  +++  +  D A+R        + + R L T H    A P YL       
Sbjct: 121 LNIQLILADNTVNLVEEGIDLAVRFTNN-PDPNAVARPLFTCHSLLVATPAYLTQHGTIH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL  H  +   ++  K            +       S L +N   +++ + +   GI
Sbjct: 180 SPQELANHRYLAHANVNRKEWT----FIKGGQETVLELTSQLTINDTGALLNFTLADGGI 235

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA---R 295
           A+LP Y ++       L  ++ D   P++ VY  YP   + +  +++F +F+  +    R
Sbjct: 236 AMLPKYFIEQQLKNNQLQIVLPDWQMPTYQVYAVYPSRRQLSQAVRSFVDFLVEEFEGKR 295

Query: 296 DW 297
           DW
Sbjct: 296 DW 297


>gi|184156728|ref|YP_001845067.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332873139|ref|ZP_08441096.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183208322|gb|ACC55720.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322506617|gb|ADX02071.1| transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323516494|gb|ADX90875.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332738651|gb|EGJ69521.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 298

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 136/292 (46%), Gaps = 10/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +  +F  VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+
Sbjct: 1   MDRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPD
Sbjct: 61  DGQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL   +   D+     DC +R+ + + +SSLI R +  + M   A+P YL++   P 
Sbjct: 121 IHLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASPQYLQDYGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L++H LI +   + +   +F +   +         S L VN+  + +     G GI
Sbjct: 180 QLNDLEQHKLINYAGAVGEKQGEFIYQGGI-----VMMDSALSVNNTEAYIAAACAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y V+D      LV ++     PS  +   YP       +L+ F N++
Sbjct: 235 IQLPYYDVQDKIEQGILVEVLSAYSAPSLPLNILYPNRSYIPKRLEVFMNWV 286


>gi|221197596|ref|ZP_03570643.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221204270|ref|ZP_03577288.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176436|gb|EEE08865.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221184150|gb|EEE16550.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 335

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 142/294 (48%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF +V R  SF+ AAEQL +S + +S++I+ LET++G +L +R  R +T+TE G
Sbjct: 34  NLEDLRVFSLVVRLASFSAAAEQLAVSAAYVSKRIAMLETQLGTRLLHRSTRRVTVTEAG 93

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + 
Sbjct: 94  ERVFAHAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLN 153

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I    LI R+L   +    A+P YL     P ++
Sbjct: 154 VRLDLFDRLVDVAAEGYDLDVRIGDEIAD-RLIARRLAANYRVLCASPDYLARRGMPRTL 212

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ +   +           L      +       L  N     +Q+ + G GI L
Sbjct: 213 ADLASHDCLAIKERDHPFGVWR--LNVRGDTVTVKVGGALSTNHGEVAVQWALAGRGIVL 270

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              +      D+  L R++ D + P+  ++  Y E +  + K++   +F+    
Sbjct: 271 RSIWEAGPLIDSGALCRVLPDAVQPA-NIWAVYTERVAASAKVRVCVDFLAQAL 323


>gi|91224599|ref|ZP_01259860.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91190487|gb|EAS76755.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 300

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 142/301 (47%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D   +FY +   GSF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G
Sbjct: 3   NTDDYIIFYHLIEQGSFSAAARHMSLTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    VY  + T +  +       SG ++I+     G+ +L   + EF   YPDI 
Sbjct: 63  RAFFTHAKAVYQAVATAEESIVGLGKNLSGHIKISVPTISGELILPQVINEFNQKYPDIN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P   
Sbjct: 123 IDMDLDNRFVDIVNERFDLAIRTG-VLPDSSLIARKLVDANWIICASPQYLAKHGIPKQP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q L KHN + +        E        D          L  N+   +    +LG GI  
Sbjct: 182 QALAKHNCLVYSYQETGAHEWA--FKDGDEVYQITVDGNLCTNNSSVLRNVALLGQGIIY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KARDWK 298
           +P  +V ++    +L+++ +D       +Y  YP   +   K+K F + ++   ++++ +
Sbjct: 240 VPRVLVYEDLKQGSLIQLFKDETAKCLGIYAVYPYTRQQPEKIKIFIDHLYTSFQSQNHR 299

Query: 299 F 299
           F
Sbjct: 300 F 300


>gi|317405133|gb|EFV85476.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 354

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 144/292 (49%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++VF  V  + SFT AA+ L L +++++  I  LE  +G++L  R  R + LT 
Sbjct: 1   MDRFQAMQVFVRVVDANSFTRAADSLSLPRTTVTTIIQNLERLLGVRLLNRTTRRIGLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++    +   +E T+   QE++++  G+LRI     +G+ +L  +L +F   YPD
Sbjct: 61  DGAGYYQHCVRILADVEETEACFQEAALRLKGRLRIDVPTCIGRLILIPSLCDFHDKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L + ++ +D+  +  DC IR    ++ SSL+ R++ T+     A+P Y+     P 
Sbjct: 121 VELVLGIGDRPVDMVQEAVDCVIRAGD-LEDSSLVARRIGTLQTVTCASPTYVARHGMPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSG 240
           +I+EL  H+ +       +   +  W   +D    E      + VN   + +   + G G
Sbjct: 180 TIEELRNHHAVH--CFSSRTGRNCAWDFKIDGKHQEVDMRGTVAVNEAGAYLDCGLKGFG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +   P Y+      +  L+ ++      +  +   YP++ + + K++AF ++
Sbjct: 238 LIQTPRYMALPYLQSGELIEVLPQWKPSATAISVLYPQSRQLSPKVRAFADW 289


>gi|313499526|gb|ADR60892.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 298

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 142/288 (49%), Gaps = 7/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A++ L +S S++ ++++ LE+ +G++LF+R  R +TLT +G+     
Sbjct: 9   VFNRVAETRSFVAASQSLGISASAVGKRVARLESRLGVRLFHRSTRSITLTAEGTMFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T+ EL ++S  P G+LR++        L+   L EF+ LYP +++ L   
Sbjct: 69  SRRILAEIEATEQELSQASETPRGRLRVSMPQ--VTRLVMPALAEFMALYPQVELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R  +P+  S L  + L        A+P YL+    PL  ++L  H
Sbjct: 127 DRMVDIVGEGFDVVMRGGQPV-DSRLSAKFLGHFQHRLVASPEYLRERGTPLHPRDLAAH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +           +  IS +  N   + + + +   GI  LPD+ V
Sbjct: 186 TCLHYRFPSNGKLETWPLRQEHPEQAYDIPIS-MVCNHVETRVCFALNHRGITCLPDFNV 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                N +LV +++D +    + Y  +P   +   KL+ F +F+  + 
Sbjct: 245 GRELANGSLVSVLDDFMERRGSFYLLWPSGRQMPPKLRVFIDFMLARV 292


>gi|261342103|ref|ZP_05969961.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315434|gb|EFC54372.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 294

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 128/296 (43%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  SGSFT AA +L +S   + + I+ LE+ +G +L  R+ R  +LT+
Sbjct: 1   MDKLRGMETFIAVVESGSFTGAASRLEMSAVMVGKYIAQLESRLGTRLLERNTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  ++   +  ++     P+G LR+      G  ++      FL  YP 
Sbjct: 61  AGRVYYDEAKRVLEQVTIAESAVERLRATPAGTLRVTAPTSFGGCVIAPLTATFLQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+ +D+  +  D AIR+   + +  ++ + L    M   AAP YL     P 
Sbjct: 121 VRVELDLTNRRVDLVEEGVDLAIRIGD-MHADDVVAKYLCPYRMVICAAPDYLARYGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  ++      +       L  V+  +   R + L+ N    +      G+G+
Sbjct: 180 TPADLVDHLCLSHTVWTARNEWR---LPGVEGEVRWKRDAVLRCNDGYGLRMAARAGAGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L P+ +V +   +  LVR++E        V   + + L+   KL  F   +   A
Sbjct: 237 LLQPEVLVAEELASGRLVRVLEHYTPTPRPVNLLWRQDLRPLPKLTEFIAHLIRHA 292


>gi|239818197|ref|YP_002947107.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804774|gb|ACS21841.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 310

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 123/296 (41%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V R GSF  AA +L L  +++SR+I  LE ++G +L  R  R LTLT  
Sbjct: 2   LDLNDIAMFVQVVRHGSFAGAARRLGLPPNTVSRRIQQLEAQLGTRLMQRSTRRLTLTSA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   H   +     L      L   S +PSG +R+A T D         + +FL  +P +
Sbjct: 62  GQAFHERCAGPVDGLVEAGQALITGSQQPSGLVRVAATADFFDFFPMEWVADFLAAHPLV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPL 181
           ++  +L +   D+  +  D A R    +  S  + RKL+        A+P Y+     P 
Sbjct: 122 RVDFVLSDARADLIAEQIDIAFR-GGALPDSGYVGRKLLGARTDGMVASPAYIAARGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++Q+L  H+ +T      + +         +  +          N+  ++ +  + G GI
Sbjct: 181 TLQDLANHDCVTSPHPSGRTLWRLAGPGGTEEEVQV--AGRFSGNTAQALRKAALAGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP  + +   +   LV ++         +   YP        + AF   +  K 
Sbjct: 239 ALLPPTMARLDLEAGRLVPVLPQYQRTGQGLSVLYPSRKHLPLAVSAFIAMVMEKL 294


>gi|260774230|ref|ZP_05883145.1| transcriptional regulator LysR family [Vibrio metschnikovii CIP
           69.14]
 gi|260611191|gb|EEX36395.1| transcriptional regulator LysR family [Vibrio metschnikovii CIP
           69.14]
          Length = 299

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+ AAEQ +L+ S +S++I+ LE E+ ++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVIELGSFSKAAEQNNLTNSVVSKRIARLEEELAVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     L       SG ++++     G  LL   + EF   YP + + 
Sbjct: 64  LLISARNVKQATQEAMDALSGFGENVSGHIKMSVPTISGDLLLADAVAEFCNRYPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    +  SSLI R ++       A+P YL    + +  ++
Sbjct: 124 MSLDNRFVDLVEGGFDLVIRTGY-LDDSSLIARHILDSQWVVCASPAYLARHGQLIMPEQ 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + +        +      T +R +          ++  ++ +  + G GIA +P
Sbjct: 183 LVAHNCLQYAYQTTGASDWEFKSPTGNRIVKV--SGSFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     L+ +  D +     +Y  YP   +   K++     I  +
Sbjct: 241 RCLVYHDFREGTLIDLFPDQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRQR 291


>gi|304396408|ref|ZP_07378289.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304355917|gb|EFM20283.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 302

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  VA SGSF  AA +L +S   +++ I+ LE  +G  L +R  R  +LT+
Sbjct: 1   MDRLTSMNVFVTVAESGSFAAAAGKLLISPQMVAKHIATLEKHLGTLLLHRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  +++       +   +PSG L+++  +  G   L   +  +L  +PD
Sbjct: 61  VGRNYYERCKIVLAEVQEADAIALDMQQRPSGTLKVSAPVTFGSFSLAPFVTRYLDRFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            Q+ L L ++ +D   +  +  IR+   +  SS+I   L    + A A+P YL     P 
Sbjct: 121 TQVDLELSDRLVDPFEEGYEVVIRIGA-LPDSSIIAHPLKPYELIACASPAYLARHGFPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
           +  +L+ H  + +G   P   +   W+ T    + E      ++ N + +++   + G G
Sbjct: 180 TPADLENHACLVYGIWSPS--KPCRWVFTQAGKVEEVHPQGRMRSNDWKALLHAALEGYG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           I L P  I+ +      LV+++ D   P+  ++   P   + T K+++F   I 
Sbjct: 238 ITLGPASILSEEIRQGRLVQVLPDYAGPARPMHVLIPAGRRQTVKIRSFVKAII 291


>gi|124267309|ref|YP_001021313.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124260084|gb|ABM95078.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 293

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF    + GS + A  QL+LS S+IS+ +S LE+ +G++L  R  R L+LTE G +  
Sbjct: 1   MQVFVESVKRGSLSAAGRQLNLSPSAISKLLSRLESRLGVRLINRTTRSLSLTEGGERYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   +E+ +  L     +P+G LRI +T    ++ L   + EF   YP + ++L 
Sbjct: 61  KRCLEILTDIESAEDSLTSFVREPTGTLRINSTQGFAKHQLLEFMAEFQGRYPRLTLELQ 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  + +D+  +  D AIRL + ++ +SL+ RKL        A+P YL     P    +L 
Sbjct: 121 ITGQAVDLIDEGVDLAIRLGE-LRDTSLVGRKLGESQRLVCASPQYLNARGRPTRPSDLL 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ +            F+       P           ++   + +Y  LG GI  L  +
Sbjct: 180 DHDCLRLSTSDVFNQWHFS---GATGPELVNVQGHFVTDNVDVLHEYARLGGGIVRLSAF 236

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +V  +     L  ++ +       +Y  YP       K++    ++  K
Sbjct: 237 MVAKDIAAGRLEPLLTNYHIEKQLIYAVYPHRRHLPAKVRVLLEYLTEK 285


>gi|107028293|ref|YP_625388.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|105897457|gb|ABF80415.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
          Length = 340

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 11/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F+ AA+ + ++   +SR I+ LE  + I+LF R  R ++LTE+G + +
Sbjct: 46  ISVFAAVVDAGTFSAAADVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVSLTEEGRRFY 105

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE         +    GKLRI     + + +L   L  F+  +P+++I+LI
Sbjct: 106 EQVMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRAILGPRLDAFMDAHPELEIELI 165

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
             +   D+ MD  D A+R  +P ++SSLI RKL+   +   AAP Y+     P   ++L 
Sbjct: 166 ARDSLGDLVMDGFDLAVRFGEP-RASSLIARKLLDTGVVTVAAPSYIARRGRPAKPEDLE 224

Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              H  + F +  P+  + F W     R  I       L VN   +++  C+ GSGIA +
Sbjct: 225 DRHHRCLEFRN--PETGKPFAWEFHRKRKRIVVDTRGRLTVNDPGALLNACLAGSGIAQM 282

Query: 245 ----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                + ++ D   L+ +  +     + +Y  YP       K +AF +FI
Sbjct: 283 LLLGAEPLIAD-GRLINLFPEWADERYPLYAYYPSRHHVPAKTRAFLDFI 331


>gi|317491096|ref|ZP_07949532.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920643|gb|EFV41966.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 297

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L +SQS++S  I GLE  + I+L  R  R +  TE G
Sbjct: 5   NFNDLISFLVVARERSFTKAAAKLGVSQSALSHSIRGLEERLDIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL       + ++E+    L++    P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  EKLATSLEPRFAEIESELDALRDMRDTPAGNIRITAGEHAVDSVLWPVLKPFLASYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++DN   DI     D  IRL + +    +  R    + M    +P Y +    P + 
Sbjct: 125 VEIVVDNTLTDIVSGRFDAGIRLGEQVAKDMIAVRIGPDMSMAVVGSPSYFEQYGTPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W    +      R+   L  NS    +    LG GIA
Sbjct: 185 QDLQNHRCINM--RLPTMGGLYAWEFEKEGQELRVRVDGQLIFNSLRQRIDAANLGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  VK+   +  LV+++++        Y  YP   ++T     F   +
Sbjct: 243 YVPEDSVKNELADGRLVQVLKEWCNTFPGYYLYYPSRKQHTTAFSLFVEAL 293


>gi|311107332|ref|YP_003980185.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310762021|gb|ADP17470.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           137 [Achromobacter xylosoxidans A8]
          Length = 302

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 135/293 (46%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +  L  F     SGSF  A  +L LS S+  + +  LE  +G++L +R  R L  T +G
Sbjct: 9   SFSGLVAFAATVESGSFAAAGRKLGLSASAAGKAVERLELRLGVRLLHRTTRSLGPTGEG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+R  +++   L+  + EL      P G+L+I+    +G+ ++   L EF L +P++ 
Sbjct: 69  EVLYRHVAKILKDLQEAERELHLVQNAPRGRLKISVPTVMGRRIVLPALSEFHLSFPEVL 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + LD+  +D+  D  D A+RL + +  S L  R++        A+P YL     P + 
Sbjct: 129 VDINLDDLIVDVIEDGYDLALRLGE-LADSGLQARRIGPHGFTTCASPAYLAQRGTPRTP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +    P       W    ++P    + S + +N   ++    + G GI  
Sbjct: 188 ADLSGHCCIYY--RFPTTGRPETWAFKGEQPDKPLKPSGI-LNDGEALASAAISGLGIVQ 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +P+Y+VKD+     L  ++ED      +V   +        +++AF +F   +
Sbjct: 245 VPNYLVKDDVEAGRLTPVLEDYTDSRGSVSLLWAPRSAEVARVRAFIDFFAER 297


>gi|296158123|ref|ZP_06840955.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295891459|gb|EFG71245.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 312

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 13/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++      GQ+ +      +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHAMTSFGQHYVVPAAGRYQERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L L  +  D+  +  D ++ L   +  S L+ ++L +    A A+P YL+    P 
Sbjct: 121 VQIELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLELHGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS----CLQVNSYLSIMQYCVL 237
           +  +L +H  +     +    +      T D P GE  I+      QVN   ++      
Sbjct: 181 TPADLVRHTCLQMVTPVFPTDKW-----TFDGPNGEETIALGPTTFQVNVAEAMAVAVSS 235

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+ L+P Y       +  LV ++ +  + +  +Y  YP       K++ +  F+
Sbjct: 236 GMGVGLIPIYSAISGLRSGELVWLLPEYTSQAMNLYALYPSRQYLDAKIRTWVEFL 291


>gi|213967024|ref|ZP_03395174.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301385209|ref|ZP_07233627.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059602|ref|ZP_07251143.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130150|ref|ZP_07256140.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928346|gb|EEB61891.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 305

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AA+ LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFAKAADSLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFARRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 VRLEIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQITCASREYLQQHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L  H +I +            ++     P      S + VNS    +  C  G G+
Sbjct: 180 QLEDLAHHQVIEYFSASTSKRYGLEFVGEGGAPDHVLACS-ISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y +     +  LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHIAGQLRSGTLVEVLRRHRPPPLALTALYPPHRQLSRRVRVFVDWLVE 292


>gi|299069759|emb|CBJ41038.1| Transcriptional regulator, LysR family precursor [Ralstonia
           solanacearum CMR15]
          Length = 303

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 131/295 (44%), Gaps = 6/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F    ++GSFT  A  L L++S++ + ++ LE+ +  +L  R  R L+LT+ G 
Sbjct: 6   LGDITAFVSAVKTGSFTATAAALGLTRSAVGKSVARLESRLSTRLLQRTTRTLSLTDDGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++    ++   LE  +  +     +P+G L++   +  GQ  +   L  ++  +P+++ 
Sbjct: 66  AVYERWRQILEDLEEVEATMAIRRGQPAGTLKLTAPLSFGQRHILPILDHYMKQWPELRA 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  D AIR+  P   + L+ R +        A+P YL     P +  
Sbjct: 126 DVRFTDRFVDVVEEGFDIAIRIGAPQDDTQLLTRTVAWQQFVTCASPTYLAARGMPQTPG 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ I F          +    T +          L ++S  ++ +  + G G+  L
Sbjct: 186 ELAGHDTIAFVSGEQPSPWRYR---TPEGLYLRESAGRLNMDSSEAMREAALAGFGLLHL 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P YI  ++     LV +++    P   +   YP     + +++AF + +  + +D
Sbjct: 243 PTYITGNDLRAGTLVEVLKPFRAPPDPIRVVYPSKRHLSPRIRAFIDLLVARWQD 297


>gi|167839456|ref|ZP_02466140.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 299

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMRVFVETAERGSVSAAAQHLDMSRAMASRYVAFIEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    +     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLADHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNEV-DPSLIARRLGTCRSVLCASPGYLAEHGAPKRPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++  + G G+ALLP 
Sbjct: 185 ARHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAAIKGGGVALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      LVR++ D   P   +Y  Y    +    ++   +F+  +  D
Sbjct: 241 FAAAEPVRAGALVRVLPDCAAPDLGIYAVYASRKQMPLAMRTMIDFLAERFGD 293


>gi|254252581|ref|ZP_04945899.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124895190|gb|EAY69070.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 325

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 135/298 (45%), Gaps = 7/298 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D    +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LT
Sbjct: 12  RMDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALT 71

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YP
Sbjct: 72  EAGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAVARYRERYP 131

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  D+  +  D AI + + +  S L+ ++L   +    A+P Y+     P
Sbjct: 132 DVHVELTLAQRMPDLLDEGYDVAIVVGRELPDSGLVSQRLGESYSVLCASPGYVDAHGMP 191

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGS 239
           L   +L +H  +    + P    D   L+  +     P      +VN   ++      G 
Sbjct: 192 LRSADLAQHVCLGM--VAPGFHYDEWTLSGPNGDETVPIAAPPFRVNVAEALAVAVREGM 249

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  LP Y       +  +VR+M +  +    +Y  YP       K++ + +F+  + 
Sbjct: 250 GIGGLPLYSAIGGLRSGQIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLRDEL 307


>gi|187919069|ref|YP_001888100.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717507|gb|ACD18730.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 304

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 138/295 (46%), Gaps = 11/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F  A+E L +S   +SR I+ LE  +  +LF R  R ++LTE+G + +
Sbjct: 12  ISVFAAVVDAGTFAAASELLGMSPPGVSRAIARLEKRLKTRLFNRTTRAVSLTEEGRRFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    +E         +    GKLRI       + +L   L EF+  +P+++++LI
Sbjct: 72  EQVMPHLRGMEEAAAAAAGGAATVRGKLRINLDPVFSRIILGPKLDEFMDAHPELELELI 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D+ MD  D A+R  +P +SSSLI RKL+   +   AAP YL     P   QEL 
Sbjct: 132 ARDQLGDLVMDGFDLALRFGEP-RSSSLIARKLLDTAVVTVAAPSYLARRGRPAEPQELG 190

Query: 188 K--HNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              H  + F +  P   + + W     R  I       L VN   +++  C+ GSG+A +
Sbjct: 191 LGMHRCLEFRN--PDTGKPYPWEFHRKRKKIVVETNGRLTVNDPSALLNACLAGSGVAQM 248

Query: 245 P----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                ++++++   LV +  D     F +Y  +P       + + F +FI    R
Sbjct: 249 LLLGGEHLIRE-GRLVNLFPDWPDERFPLYAYHPSRHHTPARTRVFLDFIVALTR 302


>gi|27382703|ref|NP_774232.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355875|dbj|BAC52857.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 303

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 130/300 (43%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  V  +G F+ AA +L++S + +S  +  LE  +G++L  R  R + LTE
Sbjct: 1   MDRLTSLEVFSRVVETGGFSAAARKLNMSTTMVSNHVQALEDRLGVRLLQRTTRRVNLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   +E       E    P G LR+     +    +   + + L  YP+
Sbjct: 61  IGKAYYDRCVQILADIEQADDIASELQSVPRGTLRVHVATHMVP-FVAPVVAKLLSAYPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L +   D+D+  +  D A+R+  P   SSLI R L T       +  Y++      
Sbjct: 120 LKIDLRMGEADVDLIEEGYDVALRMTPP-PDSSLIVRSLATWRHVLCCSHEYIEKHGRVQ 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + EL  HN      L     +++ +L     P           NS  ++ +  + G+ +
Sbjct: 179 KLDELAAHNC--GRHLNYPFGDEWRFLDRKGTPASVRISGSFVTNSGEALRKVALGGAAV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            L+  ++++D+     LVR++ +  T   ++   YP     + K++ F + +   + + +
Sbjct: 237 CLMAGFLIQDDLEAGRLVRLLPEYRTVELSMNAVYPHKHHLSAKVRTFIDMLVAHSAEQQ 296


>gi|330875082|gb|EGH09231.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 305

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AA+ LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAADSLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFTRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 VRLEIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQVTCASREYLQQHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L  H +I +            ++     P      S + VNS    +  C  G G+
Sbjct: 180 QLEDLAHHQVIEYFSASTSKRYGLEFVGEGGAPDHGLACS-ISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y +     +  LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHIAGQLRSGTLVEVLRRHRPPPLALTALYPPHRQLSRRVRVFVDWLVE 292


>gi|54301849|ref|YP_131842.1| hypothetical protein PBPRB0169 [Photobacterium profundum SS9]
 gi|46915269|emb|CAG22042.1| Hypothetical protein PBPRB0169 [Photobacterium profundum SS9]
          Length = 297

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 146/296 (49%), Gaps = 7/296 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +  D +R +  V   GSFT  A++L+++Q SIS++I+ LE +VG  L YR +R + L
Sbjct: 1   MIMNKIDCMRAYIRVTHLGSFTAVADELNVTQGSISKKIAWLERDVGFSLLYRSSRRVEL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T QGS       ++  ++E T+  L+    +  G+L ++    +   LL   +  F+   
Sbjct: 61  TAQGSSYLTYCEQMIEEMELTEAALKGELDEVVGELTLSVPSAMATRLLAKPIGMFMTQN 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I + ++++ +++     D AIR  + +  S+   R L       +A+P YLK    
Sbjct: 121 PKLVINVSVNDRVVNLIESGIDIAIRASE-LADSAYKARFLFHNQAVYFASPDYLKQHAR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P++  +L++H  +T+    P  +       ++ + +    +   + +S   ++   + G 
Sbjct: 180 PVTASDLEQHECLTYSLASPSDIWLVKQKDSLVQKVKVNEV--FKSDSAEMLLAMALSGH 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+ +LP ++V+   DN  LV+++ED    S  +Y  Y        +++AF +F+  
Sbjct: 238 GVGVLPSWMVEQCLDNNQLVQLLEDYTATSLPMYAVYKSGEYQPYRIRAFIDFLVE 293


>gi|114049260|ref|YP_739810.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113890702|gb|ABI44753.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 305

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 138/297 (46%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +++F  VA   SFT A+  L LS++ +S  ++  ET +G +L  R  R + LT
Sbjct: 1   MQDRLQAMQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +     +    +  +   Q  + + SG+LR+  +  + +NL+  +L +F+  YP
Sbjct: 61  QDGISCYERCKNLLTDYQELESLFQLQATQVSGRLRVDMSTGIARNLVLPHLPDFIEQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ +DI  +  DC IR+   +Q   +I +K+    M    +P Y+    +P
Sbjct: 121 QIELELSSTDRKVDIVAEGFDCVIRVGS-VQQEGVIAKKIGYFKMLNCVSPSYIAKYGKP 179

Query: 181 LSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLG 238
            S++EL + H LI +   +      F +L+  +  +    +  L  VN+  +    C+ G
Sbjct: 180 SSLEELSQGHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKLITVNNADAYSAACLAG 239

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI   P+  V        L+ I+ D   PS  V   YP     + +L+ F  ++  
Sbjct: 240 LGIIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVFMAWLTE 296


>gi|319794064|ref|YP_004155704.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596527|gb|ADU37593.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 305

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 135/295 (45%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +RVF  V  SGS + AAE+L +S+  ++R ++ LE   G +L +R  R L+LT 
Sbjct: 1   MDRLNAMRVFVNVVDSGSLSAAAEKLDMSRPVVTRYVAELEQWTGARLLHRTTRRLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     +V       Q  ++  +  P G+LRI T     Q  L   + +++ LYP 
Sbjct: 61  AGEELLPRCRQVLELAGDMQAAVRHPAEAPQGQLRITTGTSFAQAQLADAIADYVRLYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+L ++ +++  +  D AIR    I   +LI R+L T      A+P YLK   +PL
Sbjct: 121 VAVDLVLLDRTVNLVDERIDLAIRTAAEI-DPNLIARRLTTCRSVVCASPAYLKEHGKPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + EL + N +T        + +F        P+       +  N   S+M     G+GI
Sbjct: 180 RVDELAQRNCLTHS-YFGHSLWNFT-RKADGEPLSVAVNGNVSANDAASLMCLARAGAGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+LP Y+      +  LV + ED       +Y  Y         L+   +F+  +
Sbjct: 238 AMLPTYLTAALLQSGELVSLFEDCEPQVVGMYAVYTSRKHMPATLRTMLDFLAER 292


>gi|116692700|ref|YP_838233.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170738050|ref|YP_001779310.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116650700|gb|ABK11340.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169820238|gb|ACA94820.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 303

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA  GSFT AAEQL L + ++S  +  LE  + I+L  R  R + LT 
Sbjct: 1   MDHLQAMRTFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   L+  +   +++   P G +R+        N +   L +F   YPD
Sbjct: 61  EGATYYERCVRLLADLDDVETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P 
Sbjct: 121 LRVVISTTDRFVDLVADGIDCAVRVG-VLSDTSLVARRVGEMAQINCASPAYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S  EL  H  + +         D+ +       +   ++ S + VNS  + +  C+ G G
Sbjct: 180 SPDELPDHVAVGYFSSRTGRELDWEYADMDSGELHAVKMHSVVSVNSSQAYLACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P   +     + +LV ++ +       V   +P       +++ F +++  
Sbjct: 240 LIQAPRDGLAPLLADGSLVEVLPEWNAAPLPVSVVFPTGRHLAPRVRIFVDWLAE 294


>gi|226943891|ref|YP_002798964.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226718818|gb|ACO77989.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 299

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 145/299 (48%), Gaps = 10/299 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M    D L    VF  VA + SF  A   L +S S++ ++++ LE ++G++LF+R  R +
Sbjct: 1   MKAPLDSLSGFIVFVQVAETRSFVAAGRVLGISASAVGKRVARLEEKLGVRLFHRSTRSI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT +G+     +  +  ++E T++ L  ++  P G+LR++    L  +L+   L +F+ 
Sbjct: 61  ALTAEGALFLERSRRILAEIEATELALSRTAGAPRGRLRVSLP--LVSSLVLPVLADFMA 118

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP+I++ L   ++ +D+  +  D  +R  + +  S L  R+L    +    +P YL+  
Sbjct: 119 EYPEIELDLDFTDRLVDVIDEGFDVVVRTGQ-LSDSRLSARRLGAFRLLVVGSPDYLERR 177

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P    +L  H  + +       +E +      D P  +  +S +  N+  + + +   
Sbjct: 178 GVPRRPADLAGHACLHYRFSNTGKLEPWPLRRLPDEPEPQLPVS-MVCNNIETRVCFAQR 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G G+A LPD+ ++       L  +++D +  +   Y  +P   + + +L+AF +F+  +
Sbjct: 237 GRGLACLPDFAIRGALAEGRLRSVLDDYMEGTGYFYLLWPSGRQVSPRLRAFIDFLGAR 295


>gi|163855485|ref|YP_001629783.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163259213|emb|CAP41513.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 323

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 134/295 (45%), Gaps = 6/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F    ++GSFT AA  L L++S++ + ++ LE  +G++L +R  R L  T++G 
Sbjct: 21  FGDILAFVSAVKTGSFTAAAASLGLTRSAVGKSVARLEARLGVRLMHRTTRKLNPTDEGL 80

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +    S++   L+     + +   KP G LR+   +  GQ  +   L  ++  +P IQ 
Sbjct: 81  VVFDRWSQILEDLDEVDATMAQRRGKPGGILRLTAPLSFGQRHILPVLNAYVKTWPQIQA 140

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ ID+  +  D A+R+      + ++ R +        A+P YL +   P +  
Sbjct: 141 DVWFTDRYIDLIEEGIDVAVRIGGIKDDARVLSRTIGGQQFVTCASPGYLADRGVPATPA 200

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ I F          F     ++   G  R   + ++S  ++ +  + G G+  L
Sbjct: 201 DLAQHDTIFFLSGQRPMPWRFLHDGAIEVCDGPGR---MNIDSSEALREAALSGFGLIHL 257

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P YI   +    +LV ++E    P+  +   YP     + + + F + +  + RD
Sbjct: 258 PTYITGKDLQRGDLVEVLEAYRPPADPIRLIYPSKRHLSPRTRTFIDLLVDQWRD 312


>gi|152998799|ref|YP_001364480.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|307306147|ref|ZP_07585892.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|151363417|gb|ABS06417.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
 gi|306911020|gb|EFN41447.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 307

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 134/297 (45%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +++F  VA   SFT A+  L LS++ +S  ++  ET +G +L  R  R + LT
Sbjct: 1   MQDRLQAMQIFMRVAELQSFTQASVSLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +     +  + +  +   Q  + + SG+LR+  +  + +NL+   L EF+  YP
Sbjct: 61  QDGQSCYERCKSLLAEFQELESLFQLQAEQVSGRLRVDMSTGIARNLVLPKLAEFIEQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ +D+  +  DC IR+   +Q   LI +KL    M    +P Y+    +P
Sbjct: 121 HIELELSSTDRKVDVIAEGFDCVIRVGS-VQQEGLIAKKLGHFKMLNCVSPAYIAKYGKP 179

Query: 181 LSIQE--LDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            S+++  L  H L+ +   +      F +    T    +       + VN+  +    C+
Sbjct: 180 ESLEDLTLQNHKLVHYVSQLGGTDSGFEYQDPHTHQGNLTIQLPKLITVNNADAYSSACL 239

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  +P   V        LV I+ +   P  +V   YP     + +L+ F  ++
Sbjct: 240 AGLGIIQVPSIGVAKYLHTGELVEILPNYPAPPMSVSLLYPHRRHLSKRLQVFMAWL 296


>gi|190890900|ref|YP_001977442.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190696179|gb|ACE90264.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 299

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 129/300 (43%), Gaps = 9/300 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  V   G F+ AA +L++S + +   +  LE  +G++L  R  R ++LTE
Sbjct: 1   MDRLTSLAVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEERLGVRLLNRTTRKVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +S++  +L+         S  P G L++ T+  +    L     E++ LYP 
Sbjct: 61  TGKYYYERSSQILAELDEADRTASALSTTPRGTLKVYTSGSIV-RFLLPVFSEYMELYPS 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +   +  + +D+  D  D  IR   P   SSLI RKL         +P Y+ +   PL
Sbjct: 120 ISVDFSVGERMVDMIEDGYDLVIRTLPP--DSSLIARKLTPWRHMLVCSPAYVDSHPLPL 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E+  HN + +        +++ +     R         +  N+   +    + G G+
Sbjct: 178 KPAEIADHNCLQYAYY--PYGDEWRFEDGDGRQESVKVSGNVVSNNAEMLRFLTLNGRGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            L P ++V D+     L+RIM D     FT+   YP       K++ F + +  +  + +
Sbjct: 236 FLAPSFVVFDDIAEGRLIRIMPDYRPVEFTINAVYPNRSHLPTKVRLFIDLLAERFAEHR 295


>gi|113969039|ref|YP_732832.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|117921876|ref|YP_871068.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|113883723|gb|ABI37775.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
 gi|117614208|gb|ABK49662.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 303

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 142/293 (48%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE E+G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEELGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPAYLKARGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H+ I  G      +      A       + ++   +VNS + + Q  +   GIA+
Sbjct: 182 KELSEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV---RVNSPIMVKQLALDDFGIAM 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L +   K    N  LV I+++     F VY  Y    +    + AF +F   +
Sbjct: 239 LSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISAFLDFFVKR 291


>gi|269961086|ref|ZP_06175455.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
 gi|269834305|gb|EEZ88395.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
          Length = 314

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 126/291 (43%), Gaps = 7/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  +FT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVIFSALIKHKNFTAAAKSLGVSVSHVSKQLSQLEASLGIKLVQRTTRSFTPTEAGQTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +V   + +  +E++    + +G +R+  +   G   +   ++E    YP +Q+++
Sbjct: 68  YHHCEQVVQAVSSATLEMESQRDEVAGLVRLGLSQSFGTLHIIPAIQELREKYPQLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     I ++L        A+P YL     P+   +L
Sbjct: 128 HLFDYKVDMLEEGLDLWITNNEHLP-EGYIAQRLADCQFVVAASPDYLLKHDTPIEPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +                 ++ +         V+   ++    + G GIA L  
Sbjct: 187 SQHNCLIYRSWERDYTSWA--FTNREQELNVKVSGNYSVDLAEAVRDAAIAGWGIAYLAT 244

Query: 247 YIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y++ D   +  L++++ D   + S   Y  YP       K+ A   FI  K
Sbjct: 245 YLLGDEFRSGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVIEFIKQK 295


>gi|330969856|gb|EGH69922.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 298

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + VF +VA + SFT A ++L +S S I + I  LE  +G++LF+R  R + LT +G
Sbjct: 3   SLGSIAVFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +L+  ++EL  +   P G+LRI+    L   L+   +  F+  YPDI+
Sbjct: 63  SIFLERCRRILSELDAAEMELSNARDLPRGRLRISLP--LVSGLVMPVIINFMRTYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P   
Sbjct: 121 LDIDFSDRMVDIIEEGFDIVLRTGDPG-DSGLMSKRMGSFQLRIVGAPDYFARHGIPRHP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +          E +           E     +  N+   ++     G GIA 
Sbjct: 180 GDLSQHACLLHKFPSTGRFEHWPLRREAGVDDLE-LPQAMVCNTTEILVDVARAGLGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD+++     N  L+ +++D    + T    +P +   + +L+ F +F+  
Sbjct: 239 LPDFMISSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFMHA 290


>gi|270263848|ref|ZP_06192116.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042041|gb|EFA15137.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 309

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 8/291 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    L VF  VA + SFT AAE+L +S+SS  + ++ LE  +  +L +R  R ++L
Sbjct: 7   MPLDNLSDLLVFVRVADARSFTLAAERLGISRSSAGKSVNRLEERLATRLLHRTTRSVSL 66

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE+G   +     +  +++  +  + +    P G+LRI   +  G+  +   L++FLL +
Sbjct: 67  TEEGLVFYEHALRILAEVDEAETAINQRHQTPRGRLRIDLPVAFGRLHILPILRDFLLQW 126

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ +++   +   D+  +  D AIR+      S L+++ L    +   A+P YL N   
Sbjct: 127 PEVDVEVTFSDDYSDLVREGIDLAIRIGGN-DDSRLVRKVLAPHRLITCASPRYLDNHGV 185

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H+ + F          +       +   EP    ++ N+  ++    + G 
Sbjct: 186 PQTPDDLVEHHRLVFSHQGMPVPWRYQ---VNGQHRDEPVGGRMRFNNTEALRDSALAGL 242

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           G+  L  ++V +      LV ++E        +   YP     + K+K F 
Sbjct: 243 GLCQLGAFLVGEQLSAGTLVPVLEKYCRAEAPICAVYPTRRYLSPKVKRFV 293


>gi|299069754|emb|CBJ41033.1| putative transcription regulator protein, LysR [Ralstonia
           solanacearum CMR15]
          Length = 311

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 130/297 (43%), Gaps = 13/297 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L     V   G F  AA +L L+ SS++RQ++ LE  +G  L  R  R +TLTE
Sbjct: 1   MDRFAALNALMAVVEHGGFAPAARRLGLAPSSLTRQLNALEDSLGTLLLNRSTRTVTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +   LE     + E +  PSG LRI+  +  G+  +   L  FL  +P 
Sbjct: 61  AGQQYYEDARSILDALENADRSVSELAGPPSGLLRISLPVAFGRLHVAPALPAFLRRFPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L +   ++  +  D AIRL  P  S +L+ RKL        A+P YL     P 
Sbjct: 121 MRLDIQLSDTVANLVEERIDVAIRLGAP-ASQNLVARKLAPHRRVICASPDYLGEHGAPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +LD+HN + F             L    +         L  N    + +  + G+G+
Sbjct: 180 QPADLDQHNCLLFDYATATSTWT---LKRAGKTAKVQVAGNLHANGSELLREAAIGGAGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVIT-----PSFTVYFCYPEALKNTGKLKAFRNFI 290
            L+P ++V ++     LV ++E             ++  Y +  + + KL AF +F+
Sbjct: 237 LLMPTWLVGEDMAAGRLVPVLEAWSPSLGADEEGAIWAVYQQNRRGSKKLAAFLDFL 293


>gi|299770577|ref|YP_003732603.1| putative transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700665|gb|ADI91230.1| putative transcriptional regulator [Acinetobacter sp. DR1]
          Length = 296

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 133/293 (45%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR GSFT AA ++ +SQS++S  I GLE  +G+ L  R  R ++ T  G
Sbjct: 6   NYNDLYAFLMVAREGSFTKAAGKMGISQSALSHTIRGLEERLGMLLLTRTTRSVSPTAAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  S  + +++     L     +P+G +RI  +    + +L   LK+    YPD+Q
Sbjct: 66  ERLKQTISASFDQIDNELSLLTSFRDQPAGTVRINASSHAIREVLIPKLKKIAGDYPDVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI  +  D  +R    +    +  R    + M   A P Y +    P + 
Sbjct: 126 VELTANSGMVDIVAERFDAGVRFGSRVADGMIAVRISPDVKMAVIATPAYFEQYGIPNTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I +       +  + W    D    + +I      N    I++    G G+A
Sbjct: 186 KDLINHQCIGYRLTTQGSV--YAWEFVKDGQETKIKIQGQWIFNESYDIVEAVRAGFGLA 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +P+ +++++     L++++ +        +  YP   + +  L+   + +  
Sbjct: 244 YIPEDLIREDLKEGTLIQVLAEYSIQFPGYHLYYPHRRQLSPALRLVIDVLRE 296


>gi|241765517|ref|ZP_04763480.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241364701|gb|EER59720.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 308

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 138/296 (46%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AA  LH+S++++++ +  LE  + ++L  R  R L LT 
Sbjct: 1   MDRFDAMQAFARVVEAGSFTKAAHTLHMSRTTVTQLVQQLEARLRVRLLNRTTRRLHLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   L   +  L  +S  P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAAYYERVVRLLADLHDAETSLSAASAVPRGRLRVDVPSPLARTVLIPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +D+  +  DC +R    I   SLI R +  + +  +AAP YL+    PL
Sbjct: 121 IQLDMGVSDRKVDMVGEGVDCVLR-GGAITDPSLIARHVGDLQLQVFAAPAYLQRAGTPL 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             Q L+   H ++ F          +      +R   E R  C  V+   + +   + G 
Sbjct: 180 HPQALEKTHHRIVGFLWERTGRPLPYALRRGSERVRVEGRYVC-AVDDGNAYVAAGLAGM 238

Query: 240 GIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LPDY+   ++ +  LV + ED       +Y  YP     + KL+ F +++  
Sbjct: 239 GILCLPDYLSAPLRASGELVPLFEDWHFDPLPLYLAYPPNRHVSAKLRVFMDWVVE 294


>gi|319427161|gb|ADV55235.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 313

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGH 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++
Sbjct: 65  LLYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMAKHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLVASPDYVAKHGEPTRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  
Sbjct: 184 QLVDHNCLVY---QGEWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV +++D  +T    +   YP       K+ AF  FI
Sbjct: 241 LASYLMEDEITKGTLVPLLKDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFI 291


>gi|86356244|ref|YP_468136.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280346|gb|ABC89409.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 297

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  V+   SFT AAE+L ++++++  Q+  LE  +GI+LF R  R + LTE G+
Sbjct: 7   LDGIAAFLTVSTHLSFTKAAEELSMARATVGAQVRQLEDRLGIRLFQRSTRKVALTEAGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +  S +  ++   +        +  G+LR++   DLG  ++   + EFL L P + +
Sbjct: 67  AYRQALSGILPQIREAERAAISFQKEAVGRLRVSAPPDLGHLVIVPAVSEFLKLNPAVSV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +++  D  D AIR R  +   +LI R+L T  +   A+P Y+     P++  
Sbjct: 127 ELDLSHRPVNLVEDGFDLAIRGRLEV-DINLITRQLATSSIVISASPAYIAEHGVPMTPH 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  + F +L    +  F+           P +  L++N  L +    VLG GI LL
Sbjct: 186 DLVHHACLHFAELRWGRIWPFS---RDGEEFRIPIVPRLELNHSLGLRDAAVLGLGIVLL 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           PD++V ++     LVR++ D    +  +   YP       K++ F +F+  K R
Sbjct: 243 PDFVVGEDLRQGRLVRLLPDWDISTIQLQAVYPANRHIAVKVRRFVSFLAGKLR 296


>gi|261344816|ref|ZP_05972460.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
 gi|282567263|gb|EFB72798.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
          Length = 297

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 139/299 (46%), Gaps = 5/299 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++  F  V  SGSFT AAE L LS+S +S  I  LE  + + L  R+ R + LT
Sbjct: 1   MQKNLKQITSFLQVVDSGSFTKAAEILGLSRSMVSIDIKQLEQRLNVSLLTRNTRNIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  ++E    + Q   +  +G LR ++T + GQ  +   L EF  LYP
Sbjct: 61  EVGKHFYDDFKRIQLQIEEAFEKSQNLGLNITGTLRFSSTNEFGQRYILPLLPEFCRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +Q   ++   D+  +  D AIRL   ++SSSL  RKL    +H  A P + +     
Sbjct: 121 KLHLQYTFNSSLDDLISEKLDIAIRLGN-LKSSSLKVRKLGEYAIHLVATPQFARQY-PI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + I +L +   IT   L  +  E F    + ++       S    NS   I Q  +   G
Sbjct: 179 VQISDLAEIPWITHSLLNWQDTEYFLQNNSGEKFELPLINSQYSSNSAEVIHQMALASLG 238

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +A+ PD++V+++     L+R++ +   P   +   YP       K +AF  F+  K ++
Sbjct: 239 VAICPDWLVEEDIKHNRLIRLLPEFSLPKRNIQLLYPNTSNLPAKTRAFIEFLVGKLKE 297


>gi|209920981|ref|YP_002295065.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|293453826|ref|ZP_06664245.1| LysR family transcriptional regulator YhjC [Escherichia coli B088]
 gi|209914240|dbj|BAG79314.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|291321952|gb|EFE61383.1| LysR family transcriptional regulator YhjC [Escherichia coli B088]
 gi|323154027|gb|EFZ40233.1| hypothetical protein ECEPECA14_4057 [Escherichia coli EPECa14]
 gi|323160585|gb|EFZ46526.1| hypothetical protein ECE128010_3156 [Escherichia coli E128010]
 gi|323182991|gb|EFZ68392.1| hypothetical protein ECOK1357_3879 [Escherichia coli 1357]
          Length = 299

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 61  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|83720634|ref|YP_441189.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|257140145|ref|ZP_05588407.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83654459|gb|ABC38522.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 324

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 137/298 (45%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G +L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVEANSFTRAAETLGMPRASVTTIIQNLEALLGARLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q    KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 61  EGAAYYEHCIKIITEIAETDASFQVGKRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP+
Sbjct: 121 VVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 180 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRMEGGVTVNDSDAYVTCGVEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++  +      +   YP     + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGTLKEVLPGLNPKPKPISIVYPNNRHLSAKVRVFADWIAE 292


>gi|331665142|ref|ZP_08366043.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
 gi|331057652|gb|EGI29638.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
          Length = 323

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAIQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR     +   +I R L  + +   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGASPED-GVIARPLGKLTVVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|294139806|ref|YP_003555784.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293326275|dbj|BAJ01006.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 313

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 138/291 (47%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    +     +   +    G L++  +   G   +   L +F+  +P++++
Sbjct: 65  LLYAQGEELLRDADQAIASVHNLNDATRGVLKVGISQSFGTMHIIPALPDFMATHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y++   +P   +
Sbjct: 125 QISLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLAASPSYIEKHGQPDRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  
Sbjct: 184 QLVDHNCLVYH---GEWHEHSVWQFKQGEDYCEIGVSGNFRVDNAPALKSAAISGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV +++D  +T    +   YP       K+ AF +FI
Sbjct: 241 LASYLLEDEVEKGTLVPLLQDWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|170720415|ref|YP_001748103.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758418|gb|ACA71734.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 305

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/291 (20%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F+++A+ GS    A +L ++  ++S++++ LE  +G++L  R  R ++LT +G  
Sbjct: 5   QDLGFFHLLAKQGSLAATARELGVTPPAVSKRLAALEARLGVRLVNRTTRSMSLTAEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +  +++  +  +     +P G +R+  ++  G+  +   L +F   YPDI++Q
Sbjct: 65  YVAHAARILAQVDEVEQLIGRHRAEPKGLIRVNASLGFGRRYIGPALADFYARYPDIEVQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +  +D++    D  IR    +  +S   RK+ +      A+P YL+    P  + +
Sbjct: 125 LEISDHPLDLASHGFDLGIRFG-TLPDASFHARKIASNRRLLCASPLYLEKHGAPTKLSD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN I                    R         L  N     + + + G GI L  
Sbjct: 184 LARHNCIFLRQNESPYGVWT--FTNGGRTQNIKVQGALSCNDGEVALNWALQGHGILLRA 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ +     +  L  ++ED       VY  YP+ L  + +++   +F+  +
Sbjct: 242 EWDIARYVRSGRLRLLLEDQTPTRADVYAVYPQQLHLSARVRRLIDFLIER 292


>gi|307730931|ref|YP_003908155.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307585466|gb|ADN58864.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 327

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 124/293 (42%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +R+F   A  GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G
Sbjct: 3   NLGDIRLFVEAAHQGSLSAAGRRMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYP++ 
Sbjct: 63  RLYLNCCRQALQSLDDAKAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L +   ++  +  D AIR   P Q SSL+ RKL        A+P Y+    EP   
Sbjct: 123 FALTLSDSLTNLVQEDIDLAIRFGVP-QDSSLVARKLARNRRVLCASPEYIARKGEPKDP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I          E         +    P  +  Q N      ++ + G GIA+
Sbjct: 182 NDLANFDCIVLSTGSGPVNEWRFTRGDEVQHYTVPLETARQTNDGAVAREWALRGYGIAV 241

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + V+ +     L  ++ D   P   ++  Y        +++   +F+  +
Sbjct: 242 KSMWDVEADLRSDGLKILLPDWRYPDAPLHALYHRNRFMAPRVRVLLDFLSER 294


>gi|187920768|ref|YP_001889800.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719206|gb|ACD20429.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 318

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 140/293 (47%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LRVF  VAR  SF+ AAE L +S + +S++I+ LET +G +L +R  R + +TE G
Sbjct: 8   DLGDLRVFCEVARKSSFSAAAEALSVSAAYVSKRINVLETTLGTRLLHRSTRRVAITEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++    ++   ++    ++  +   P GKLRI+++   G+  +   L  F   YP + 
Sbjct: 68  ERVYTWAEKILDDVDQLVEDVSTTRRIPGGKLRISSSFGFGRRFVAPALARFSERYPQLS 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D+  +  D  +R+   I +  LI R+L + H    A+P Y+     P  +
Sbjct: 128 VRLDLFDRLVDVGGEGFDLDVRIGDEI-APHLIARRLASNHRVLCASPDYIARHGAPRQL 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +   +           L      +       L  N     +++ + G GI L
Sbjct: 187 AELSSHACLAIKERDHPFGLWR--LTVRGETVSIKVTGPLSTNHGEVAVEWALAGRGIVL 244

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + V+   ++ +L +++ +V  P+  ++  YP  L  + K++   +F+  +
Sbjct: 245 RSMWDVRPLLESGHLQQVLPEVTQPA-NLWAVYPARLAQSAKVRVCVDFLSEE 296


>gi|21309657|gb|AAL47571.1| transcriptional regulator LysR [Shewanella algae]
          Length = 303

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 139/289 (48%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +  L +S+ISR+I+ LE ++G++L  R+ R ++LT+ G
Sbjct: 3   DLNGMLLFAAVVRAEGFSQAARETGLPKSTISRKIAQLEQQLGVRLLQRNTRSISLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP ++
Sbjct: 63  ALFYQHCDSICNEVEAAKATIENTHNDVSGSLRIAIPVSFSQELIANLCSGFMRLYPGVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+Q S L+ R L        A P YLK+   P + 
Sbjct: 123 LDVQFTDADVGLVGEGYDIAIKYG-PLQPSDLVARLLFERQPILVAGPGYLKSKGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H+ I  G      +     L    R          +VNS + + Q  +   GIA+
Sbjct: 182 RDLARHDGILLGTSRSAPIWP---LGKGSRKTMASFRRRTRVNSAIMVKQLALDDFGIAM 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L   + K+   +  LV ++++     F VY  Y    +    +  F +F
Sbjct: 239 LSHSVCKNELASGALVPLLQEWPIEPFKVYGVYSSRRQLATNISVFLDF 287


>gi|157960941|ref|YP_001500975.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845941|gb|ABV86440.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 313

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    +     +   +    G L++  +   G   +   L EF+  +P++++
Sbjct: 65  LLYTQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMARHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y+     P   +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLAASPSYVAKHGVPSRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  ++   +V++  ++    V G G+  
Sbjct: 184 QLVDHNCLVY---QGEWHEHSVWQFKQGEDNCEIGVTGNFRVDNAPALKSAAVSGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV ++ED        +   YP       K+ AF +FI
Sbjct: 241 LASYLLEDELEKGTLVPLLEDWQLTHNLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|325121775|gb|ADY81298.1| putative LysR family transcriptional regulator [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 301

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 147/293 (50%), Gaps = 5/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEDQLGVALFKRTTRSLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGALFYEHSGRALSEIQNAAALLDQGKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++ +D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRTVDLVEEGFDLCIRIGALPDTTQLVAKPIGEHRMLLCASPDYLNEAGSL 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++LD+H  I   D     M+ +        P      + L +N   +I    + G+G
Sbjct: 181 ENIEDLDQHATI--ADPHFGQMQKWRLQKENSEPFFIKPKAKLLLNDLQAIKNAALAGAG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LPD++++       LV+++E + + +F ++  +P       K +   +++
Sbjct: 239 IAWLPDWLIQNELQEGKLVQVLETMSSIAFPIHLVWPTLPFMPLKTRLAIDYL 291


>gi|78060070|ref|YP_366645.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964620|gb|ABB06001.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 297

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 123/289 (42%), Gaps = 6/289 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  +   GS +  A  L ++  ++S +++ +E  +G+KL  R  R L LT +G   
Sbjct: 6   DLEFFARLVTHGSLSALARDLGVTPPAVSARLNQIERRLGVKLLNRTTRRLALTNEGEVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               S++  ++   +  +  S  +P G L++  T   G+  +   L  F   +P+++IQL
Sbjct: 66  LATGSKLLEQVHELERTVSSSRNQPQGLLKVNATFGFGRRHIVPALSAFRDRHPEVEIQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ++++    D  IR  + +    ++ RKL        A+P YLK    P    +L
Sbjct: 126 ELTDRPMNLAELAYDVGIRFGE-LPDQRVVGRKLAANRRFVCASPAYLKANGVPKVPGDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I   +                R         +  N   + +++ + G G+ +  +
Sbjct: 185 RGHRCIVLRENDTAYGTWH--FTKGKRHELVKVHGVMSSNDGEATLRWAIDGHGVLVRSE 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  +   D+  L R++ D   P   +Y  YPE L  + K++ F  F+  
Sbjct: 243 WDAQPFIDSGALTRVLADWSLPPSDIYAVYPERLNLSAKVRVFIEFLCE 291


>gi|253689285|ref|YP_003018475.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755863|gb|ACT13939.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 297

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 134/291 (46%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L LSQS++S  I GLE  +G++L  R  R +  T+ G
Sbjct: 5   NFNDLISFLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL       +  +E+  + L +   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  EKLAHSLGPRFADIESELVALGDMRERPAGNIRITAGEHAVDSILWPVLKPFLANYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI +   D  IRL + +    +  R    + M    +P+Y      P + 
Sbjct: 125 VEITVDNALTDIVLGRFDAGIRLGEQVAKDMIAVRIAPEMSMAVVGSPNYFARHPAPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W    +      R+   L +NS    +    +G G+A
Sbjct: 185 QDLQHHRCINM--RLPTMGGIYAWEFEKNGREIRVRVEGQLTMNSLRQRIDAAQIGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V+++     L+R++ +   P    Y  YP   ++T     F   +
Sbjct: 243 YVPEDAVREDIASGRLIRVLTEWCPPFPGYYLYYPSRKQHTTAFSLFVEAL 293


>gi|254507797|ref|ZP_05119928.1| transcriptional regulator [Vibrio parahaemolyticus 16]
 gi|219549322|gb|EED26316.1| transcriptional regulator [Vibrio parahaemolyticus 16]
          Length = 309

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 122/291 (41%), Gaps = 7/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  +    +FT AA  L +S S +S+Q++ LE  +G+KL  R  R  T TE G   
Sbjct: 2   QMVVFAALLTHKNFTAAARSLGVSVSHVSKQLAQLEESLGVKLVQRTTRTFTPTEAGENF 61

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +V   +E  Q E++    + +G ++I  +   G   +   + +  + YP++Q+++
Sbjct: 62  YHHCQKVVRTIEEAQREVESQRDEVAGLIKIGLSQSFGTLHILPAIDDLRVRYPNLQVEM 121

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + ++L        A+P YL     P    EL
Sbjct: 122 HLFDYRVDMLQEGLDLWITNNETLP-EGYVAQRLADSRFVVAASPDYLVKHSTPHHPNEL 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +              +  +  +         V+   ++    V G GIA L  
Sbjct: 181 VQHNCLIYRSWERDYTSWA--FSKPEEQLNVKVSGNYSVDLAEAVRDAAVAGWGIAYLAT 238

Query: 247 YIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y+++D   N  L++++ D         Y  YP       K  A   FI  K
Sbjct: 239 YLIRDEFKNGQLIQLLPDWQASQDMPFYAVYPSRRYLPTKTAAVIEFIKQK 289


>gi|309782827|ref|ZP_07677547.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308918251|gb|EFP63928.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 306

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 127/292 (43%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V   GS + AAE + +S+  IS+ ++ LE  +  +L  R  R L+LTE
Sbjct: 1   MDRLSDVAIFVQVVERGSLSAAAEAMGMSRGVISKALARLEARLQTRLLQRTTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+     + E    ++  +  +     +  G LR++        LL   L  F   YP 
Sbjct: 61  AGAAFFEKSREGLALVDAAEQAVSALRDEARGTLRVSAPASFAVTLLAPLLGAFQARYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI L ++++  D+     D AIR+   +  SSL+ R+L       Y AP Y +    P 
Sbjct: 121 VQIDLDMNDRYADLVAGRIDVAIRIGM-LGDSSLVARRLANCAHAIYGAPSYFRERGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L  HN + + +       D+                 +  N+ L + +    G G+
Sbjct: 180 SPEDLRNHNCLVYANY--DGPHDWVLTDAAGHRHIAHVAGSMLANNSLVLREAARSGLGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +L P Y+V+D+     L  ++ D       ++  + + +    K++AF +F+
Sbjct: 238 SLGPAYLVRDDVAAGRLQAVLTDYTAREVPLHAVFTQRVHLLPKVRAFVDFL 289


>gi|241203692|ref|YP_002974788.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857582|gb|ACS55249.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 300

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  V   G F+ AA +L++S + +   +  LE  +G++L  R  R ++LTE
Sbjct: 1   MDRLTSLTVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  + ++  +L+         S  P G L++ T+       L   + EF+ LYP 
Sbjct: 61  TGKYYYERSLQILAELDEADRTAGALSTTPRGTLKVYTS-SAIVRFLLPVVGEFMELYPS 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +   +  + +D+  D  D  +R   P   SSL+ RKL         +P Y ++   P 
Sbjct: 120 ISLDFSVGERMVDMIEDGYDLVMRTVPP-PDSSLVARKLTPWRHMLVCSPVYFESHPMPK 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  E+  HN + +        +++ +     +         +  NS   +    + G GI
Sbjct: 179 TPAEVADHNCLQYAYY--PYGDEWRFEDGEGKKESVKISGNVVSNSAEMLRFLTLTGRGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            L P ++V D+     LV+IM D     F +   YP       K++ F + +  +  + +
Sbjct: 237 FLAPSFVVFDDIAEGRLVKIMPDYRPIEFNINAVYPNRSHLPTKVRLFIDLLAERFAEHR 296


>gi|325522686|gb|EGD01198.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 305

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 136/286 (47%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   +
Sbjct: 7   MRVFTRIVETGSFTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRISLTEDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  + ++   P G+LR+     + + ++   L EFL  +P I ++L 
Sbjct: 67  ERCVGVLREIDDMEAAVSQARNVPRGRLRVNLPPAMAKQIMVPALPEFLAAHPGISVELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S L+ +++ ++     AAP YL+ C  P ++ +L 
Sbjct: 127 VTDRQIDLVGEGVDCVVRIGA-LDDSGLVAKRIGSLTTRTCAAPAYLERCGAPETVDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I+           +++L   +  I +     + VN   + +   V G G+     Y
Sbjct: 186 QHVAISHISADTGRPRPWDYLVDGETRIVQ-MCGTVAVNDADTYIACGVAGIGLIKTSLY 244

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V+    +  L  ++ D  TP   +   YP       KLK F +++
Sbjct: 245 LVEPYLKSGRLREVLTDFNTPPRPISILYPPNRHTPVKLKVFVDWL 290


>gi|94497612|ref|ZP_01304181.1| transcriptional regulator, LysR family protein [Sphingomonas sp.
           SKA58]
 gi|94423029|gb|EAT08061.1| transcriptional regulator, LysR family protein [Sphingomonas sp.
           SKA58]
          Length = 297

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 128/295 (43%), Gaps = 10/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F +VA  GSF +AA+ L L+ S++SR I+ LE  +G+ L  R  R L LT
Sbjct: 1   MDNRLGDIETFLMVATEGSFANAAKALRLTPSAVSRSIARLEQRLGVTLVRRTTRALALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G         +   +   +  L E    P G LRI  +   G   L   L +F   YP
Sbjct: 61  REGMAYRDRMMVLLTDMMELETGLGEERGAPRGVLRINASPSFGVEWLIPMLPDFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L L +  +D+  + AD AIR+  P++ + L  +KL    M   A+P YL     P
Sbjct: 121 AVRIDLTLSDAIVDLVEERADIAIRIG-PLRDTRLRAKKLGHSRMALVASPDYLARRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
            +  +L  H+ + F           +W   V R I + P       NS   + Q  V G 
Sbjct: 180 ATPNDLAGHDCLRFSFRRSVD----SWPFRVGRKIVQLPVEGAYFGNSGEVVRQMAVAGC 235

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA    + V     +  LV I+ D        ++  Y    +   +++AF +F+
Sbjct: 236 GIARHGYFHVARDLKDGRLVEILADYAAGDGEDIHALYAAEDRTAARVRAFLDFL 290


>gi|71906775|ref|YP_284362.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB]
 gi|71846396|gb|AAZ45892.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 306

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 8/296 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++ + GS   AA +L L+  ++SR++S LE  +G++L  R  R ++LT +G   
Sbjct: 4   ELAFFSLLVQQGSLVQAARELGLTGPAVSRRLSQLEQRLGVRLLARTTRRMSLTPEGELY 63

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              +  +  ++E  +  L  +  +P G LRI  T   G+  L   + EF+  +P + IQL
Sbjct: 64  LAESRRILGEIEALEQALNRTRAEPRGLLRIHATFGFGRRQLAPAVSEFVRQHPAVDIQL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +       D AIR  +P ++  ++ R++ +   + +A+P YL    +PL++ EL
Sbjct: 124 TLSDQPVTPGEQGFDIAIRFGEPPEA-RVVARQIASNQRYLFASPAYLARRGQPLTLDEL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H+ I   +          W     +     ++S  L  N     + + + G GI L  
Sbjct: 183 VNHDCIVIREGTGAFG---TWTLCSGKQCRNIKVSGKLSSNHGEVAVDWALDGHGILLRS 239

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +    +     LVR++ +       +Y  YP+ L  + K++ F +F+  +   ++
Sbjct: 240 LWDTATDLRAGRLVRVLPEWSGSPADIYALYPQRLNLSAKVRVFLDFLTERFAAYR 295


>gi|92112912|ref|YP_572840.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796002|gb|ABE58141.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 301

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D + +F  +  SGSFT AA  L + +++ +  I  LE+ +G++L  R  R +  T 
Sbjct: 1   MDRFDSMTLFVRIVESGSFTRAANALDIPRATATLAIQRLESRLGVRLLERTTRQVRPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   H+    +  +LE  +  LQ  +  P G LR+         ++  +L +F   YP 
Sbjct: 61  EGEAFHQRCLHLLAELEDAEAMLQPIADNPRGVLRVELHGTHASRIVLPHLDDFHARYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++ +D+  +  DCA+R  +P + SSL+ R+L T+     A+P YL+    P 
Sbjct: 121 LELVITTGDRRVDLVGEGIDCAVRSGEP-EDSSLVARRLATLEQVICASPAYLERMGMPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L  H+ + F           + +              L VN   S +   + G G+
Sbjct: 180 TPESLRHHHGVHFISGFNAPDRTLDVIVD-GETRHVTTGGWLTVNDADSYVVSALEGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP + +    +   LV ++     PS  +Y  YP+    + +++ F  +I
Sbjct: 239 IQLPRFRLTPHLETGELVEVLPRWEKPSLPLYAVYPQRRHLSPRVRVFLEWI 290


>gi|167616306|ref|ZP_02384941.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 299

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFIEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    +     + +    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLADHVATVVAKPDDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNEV-DPSLIARRLGTCRSVLCASPGYLAEHGAPRQPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++  + G GIALLP 
Sbjct: 185 ARHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAAIAGGGIALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      L R++ D   P   +Y  Y    +    ++A  +F+  +  D
Sbjct: 241 FAAAEPIRAGTLARVLPDCAAPDLGIYAVYASRRQMPLAMRAMIDFLAERFGD 293


>gi|167035415|ref|YP_001670646.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861903|gb|ABZ00311.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 302

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L  R  R L+LT 
Sbjct: 1   MDRLNAMRVFVTVVDLGSQSAAADHLQLSRPVVSRYLAELEDWVGARLMQRTTRKLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       Q  +Q+    P G LRI+ +   GQ  L   +  ++  YP 
Sbjct: 61  AGQETLPRCRQLLDLAGDLQAAVQQPEDAPKGALRISVSTSFGQAQLVDAVAAYVQRYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L + ++ +++  +  D AIR    +   +LI R+L        AAP YL     P 
Sbjct: 121 VKVELQMLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLSVCRSVVCAAPAYLHEHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL +HN +T                   + +  P    +  N  +++ +  + G+GI
Sbjct: 180 RVEELSRHNCLTHAYFGHSLWH----FEVAGQHVAVPVAGNISANEAMTLQKAALAGAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP Y   +      L+R++ +       +   Y         L++  +F+ L+ +D
Sbjct: 236 AMLPTYQAAEALRRGELIRLLPEARPRELNLNAVYTSRKHMPATLRSMLDFLVLRFKD 293


>gi|307945337|ref|ZP_07660673.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307771210|gb|EFO30435.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 315

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 128/298 (42%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A  GSF+ AA+QL +SQ ++S+ +  LE  +G +LF R  R L LTE
Sbjct: 1   MDKLTALASFVRAADLGSFSSAAKQLGISQPAVSQHVRSLEDSLGARLFNRTTRRLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++  +L    + +Q    + SG L I   +   +N+L   L  F   +P 
Sbjct: 61  AGERYFTQAKDIVERLRDADLSVQSEEAQMSGSLAIGLPMGFAENVLSDFLIAFKKEHPC 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++ + +  +D+  +  D AIRL + I+   LI +++        A+P YL     P 
Sbjct: 121 LLLEISISDLFVDVMAERLDVAIRLGE-IRDDRLIVKRIGLSQRCLVASPDYLNRRGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H+ + + ++          +      +       + +N+   +    + G GI
Sbjct: 180 KPEDLTGHDYLLYKNI--STGHQVPLVGRCGSRVFIDITPTMIINNSAMLRNAAIQGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            L   +++    +  +L  ++     P   V+  YP       K++ F + +    RD
Sbjct: 238 GLYNRWMIAPYLEAGSLEEVLPGWCYPPHPVHAVYPSNRFVPLKVRRFVDQLTRFMRD 295


>gi|157369642|ref|YP_001477631.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321406|gb|ABV40503.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 296

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 128/299 (42%), Gaps = 10/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V   GSF  AAE++ +S + + + I  LE  +   L  R  R   LTE
Sbjct: 1   MDRLTSMAVFVRVVEKGSFVAAAEEMAISPTMVGKHIRYLEQRLNAPLLNRTTRRQGLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +    +  +   +     PSG LRI+  +  G  +L   L EFL  +P+
Sbjct: 61  TGRVFYERCRRLLADADAAEASARALLSSPSGLLRISAPVTFGNRVLTPILTEFLQRHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +++L ++ +D+  +  + A R+  P+    L+ R L    M   A+P YL     P 
Sbjct: 121 VEAEVVLSDRKVDLIEEGYEAAFRIG-PVADDGLVARALPDYRMTLAASPDYLAQQGVPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H+   F          F  L      I  P    L+++S   + +  + G GI
Sbjct: 180 QPEQLSAHSCFGFSQ---WDGNHFWRLQGPTGEISVPVRPRLRMDSGEGVRRAALAGFGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           AL    ++ ++     LVR++ D    S  ++  Y    + + KL+AF       AR W
Sbjct: 237 ALHACMLLDEDIASGRLVRVLPDYSPLSRPMHLVYLPERRQSPKLEAFIA--LTVARLW 293


>gi|91794044|ref|YP_563695.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91716046|gb|ABE55972.1| transcriptional regulator, LysR family [Shewanella denitrificans
           OS217]
          Length = 313

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G+
Sbjct: 5   LEPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGN 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    E     +   +    G L++  +   G   +   L +F+  +PD+++
Sbjct: 65  LLYVQGEELLRDAEQAVSSVHNLNDATRGVLKVGISQSFGTMHIIPALPDFMARHPDLEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y+         +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLVASPSYIAQHGVVARPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    V G G+A 
Sbjct: 184 QLVDHNCLVY---QGEWHEHSMWQFKRGEDYCEIGVSGNFRVDNAPALKSAAVSGLGVAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      L+ ++ D        +   YP       K+ AF +FI
Sbjct: 241 LASYLMEDEIEKGTLIPLLTDWQLTNHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|300691178|ref|YP_003752173.1| transcriptional regulator (lysR family) [Ralstonia solanacearum
           PSI07]
 gi|299078238|emb|CBJ50885.1| putative transcriptional regulator (LysR family) [Ralstonia
           solanacearum PSI07]
          Length = 310

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 128/295 (43%), Gaps = 6/295 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++AR GS   AA +L L+  + ++++S +E+ +G++L  R  R ++LT +G   
Sbjct: 8   ELEFFTLIARHGSLAAAARELDLTPPAATKRLSQMESRLGVRLVNRTTRSISLTNEGETY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L   +  +  S  +P G LR+  T+  G+  +   + EF   Y  +++QL
Sbjct: 68  LAYAQRILADLREMESVVASSGSEPRGLLRVNATLGFGRTTIAPLVSEFAKRYAQVEVQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ ID+     D AIR    +    L  R++++      A+P YL+    P S+ +L
Sbjct: 128 EVTDRPIDLVESGVDLAIRFG-TLPDKRLSARRIMSNRRFLCASPVYLEKFGTPKSLSDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I                              L  N    ++ + + G GI +  +
Sbjct: 187 HHHRCIIHRQNDDTHAIWR--FEHDGHHESVKVAGALSSNDGDIVLGWALDGHGILIRSE 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + +    ++  L  ++     PS  ++  YP+    T + +AF +F+  K +  +
Sbjct: 245 WDLAKYLESGRLRVVLPQFKLPSADLFVYYPQRRNQTARARAFIDFLVEKFQRLR 299


>gi|170704271|ref|ZP_02894826.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170130819|gb|EDS99591.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 307

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AAE L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAKAAELLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAELIESEASAQALEPHGLVRVNAPMSFGLRHLSPLLPAFLERYPRVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     A+P YL     P   
Sbjct: 126 IDLVLTDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLDRHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++++H  +T+ +L       F   A+    +G      ++ N+   I    + G G+AL
Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRNPAS-GEDVGVSVHGRIRTNNADVIAPALLTGHGLAL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++  D   +  L  +M +       V    P  +    ++    +F+
Sbjct: 244 QPEFLAWDALQSGELEEVMPEWKIADVNVNLVTPPGMLRAARVTVLLDFL 293


>gi|220925972|ref|YP_002501274.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219950579|gb|ACL60971.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 297

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 139/294 (47%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR GSFT AA +L +SQS++S  + GLE  +GI+L  R  R ++ TE G
Sbjct: 5   NLNDLAAFLAVAREGSFTRAAAKLGVSQSALSHSLKGLEARLGIRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +  + +++     L +   KP+G +RI+      ++++   L+  L  YPD+ 
Sbjct: 65  ERLVRTLAPRFDEIDAELAALTKYREKPAGNVRISAGEHAAESIIWPTLERLLPEYPDVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++DN   +I  +  D  +RL + ++   +  R    + M A  AP Y +  R+P + 
Sbjct: 125 VEVVVDNGLTNIVAERYDAGVRLGEQVEKDMVAVRIGPDMRMAAVVAPSYFEGRRKPRTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I     +P     + W           R+   L VN+    ++  + G G+A
Sbjct: 185 EDLTGHACINL--RLPTRGGIYAWEFEKGSRALNVRVEGPLVVNTGSMALKAALSGLGMA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP+  V+   D   LVR++ D   P    +  YP   + T         +  +
Sbjct: 243 YLPEDRVRTGLDEGRLVRVLADWCPPFPGYHLYYPSRRQPTPAFALLVEALRFR 296


>gi|299770642|ref|YP_003732668.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
 gi|298700730|gb|ADI91295.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
          Length = 303

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 149/293 (50%), Gaps = 5/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  V  +GSF  AAEQLHL++S+IS+ I+ LE ++G+ LF R  R L++T
Sbjct: 1   MQHELSAISIFVTVVEAGSFVKAAEQLHLTRSAISKNIARLEDQLGVALFKRTTRTLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+  +  +     +++     L +  +  +G+LR++  +  GQ      + +F   + 
Sbjct: 61  DEGTLFYEHSRRALSEIQNAAALLDQGKINATGRLRMSVPVLFGQLFAAPLMVKFAQQHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q+++  +++ +D+  +  D  IR+     ++ L+ + +    M   A+P YL      
Sbjct: 121 DLQLEISFNDRTVDLVEEGFDLCIRIGTLPDTTQLVAKPIGEHRMLLCASPDYLNEAGLL 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++LD H  +T  D     ++ +        P+     + L +N   +I    + G+G
Sbjct: 181 ENIEDLDHH--VTIADPHFGQIKKWQLQQENSEPLFFKPKTKLLLNDLQAIKNAALAGAG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LPD++++    +  LV+++E + + +F ++  +P       K +   +++
Sbjct: 239 IAWLPDWLIQNELQDGKLVQVLETMSSIAFPIHLVWPTLPFMPLKTRLAIDYL 291


>gi|295684224|gb|ADG27456.1| LysR-like protein [Klebsiella pneumoniae]
          Length = 303

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 141/293 (48%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPGYLKARGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H+ I  G      +      A       + ++   +VNS + + Q  +   GIA+
Sbjct: 182 KELSDHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV---RVNSPIMVKQLALDDFGIAM 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L +   K    N  LV I+++     F VY  Y    +    + AF +F   +
Sbjct: 239 LSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISAFLDFFVKR 291


>gi|215488798|ref|YP_002331229.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215266870|emb|CAS11311.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 323

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL  +L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPHLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARSLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|187925301|ref|YP_001896943.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187716495|gb|ACD17719.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 327

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 124/293 (42%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +R+F   A+ GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G
Sbjct: 3   NLGDIRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEAGLKTRLFERTTRQLRLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYP++ 
Sbjct: 63  RLYLNCCRQALQSLDDAEAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L +   ++  +  D AIR   P Q SSL+ RKL        A+P Y+    EP   
Sbjct: 123 FALTLSDSLANLVQEDIDLAIRFGVP-QDSSLVARKLAPNRRVLCASPDYIARKGEPKDP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I          E         +    P  +  + N      ++ + G GI +
Sbjct: 182 HDLANFDCIVLATATGLANEWRFTRGDEVQHYTVPFETARETNDGAVAREWALRGYGIVI 241

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + V+ +     L  ++ +   P   ++  Y        +++   +F+  +
Sbjct: 242 KSMWDVEADLRADGLKILLPEWRYPDAPLHALYHRNRFMAPRVRVLLDFLSER 294


>gi|73539475|ref|YP_299842.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122812|gb|AAZ64998.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 307

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 133/293 (45%), Gaps = 9/293 (3%)

Query: 3   FDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D D +L  F ++ + GS    A +L+L+  ++SR++S LE  +G++L  R  R ++LT 
Sbjct: 1   MDSDSQLAFFCLLVKQGSLAATARELNLTPPAVSRRLSQLEARLGVRLLNRTTRRISLTN 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G         +   ++  +  +  S   P G LR+   +  G++ +   +  F   YPD
Sbjct: 61  EGEVYFANAMRILGDIDEMERLVSSSREAPKGLLRVNAPLGFGRSYIGPAISGFSKTYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL L ++ I +  +  D +IR    +  S LI +++        A+P YL++  EPL
Sbjct: 121 VEVQLQLTDRPISLPDEAIDVSIRFGD-LPDSRLIAKRIAPNRRLLCASPAYLRSAGEPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              +L +H  I             NW  T  +     ++   L  N     + + + G G
Sbjct: 180 LPHDLTQHACIVLRQNETAYG---NWRLTRGKQTETIKVHGKLSTNDGEVALNWALEGHG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +  ++ V     +  LV+++ D  TP   +Y  Y E L  + K+  F   +
Sbjct: 237 ILMRAEWDVAKFLRSGRLVQVLTDYATPPADIYAVYLERLNQSAKVSYFVEHL 289


>gi|15966629|ref|NP_386982.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307300336|ref|ZP_07580116.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307319619|ref|ZP_07599045.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15075901|emb|CAC47455.1| Putative transcription regulator [Sinorhizobium meliloti 1021]
 gi|306894741|gb|EFN25501.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306904502|gb|EFN35086.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 297

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G  L  R  R  +LTE
Sbjct: 1   MDTLTRIRAFIDVVDAEGFSAAARRIGKSKALLSKYVRELEDELGALLLNRTTRQFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  SE+  +++     ++ ++    G+LRI          +  +L +F   +P+
Sbjct: 61  AGHTYYRSASEILKEIDNLADLVRANNSDLKGRLRITVPRTFVDADIGQSLIDFGKEHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++ D++ ID+  +  D AIR+ + ++ S+LI RKL    +   A+P ++       
Sbjct: 121 LSLDIVSDDRFIDLVEEGFDVAIRITR-LEDSTLIARKLDDFQVLVCASPDFMAKAGPLG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL K   I   D   +    + ++     P        ++VNS L+  +  V G G+
Sbjct: 180 HPSELSKLPCIL--DTNGRSYSSWRFVEKDGSPFTVSVSGQIEVNSPLAAARAAVSGIGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LPD+I +       LV   +D +     +Y  YP       K++ F +F+
Sbjct: 238 AVLPDFIARPKIAAGELVTFFDDFLPKDRGIYAIYPHRRYLPTKVRTFVDFL 289


>gi|307546057|ref|YP_003898536.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218081|emb|CBV43351.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 298

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 142/294 (48%), Gaps = 13/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD++  F  V R G+F  AAE+L +S S +SR +S LE+++   L YR  R + LTE G 
Sbjct: 4   WDRVEAFIEVVRLGAFNAAAERLRVSSSHVSRLVSQLESQLDTPLLYRTTRRIRLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    ++      +  ++E   +PSG L + +    G+  L   + +F+ L+P +++
Sbjct: 64  LYYQHCHHLFDGFREAEAAIKELQTRPSGLLSLTSATTFGERYLAPLVHDFMRLHPQLEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   N+ +DI  +  D AIR+   +Q SSLI R+L     +   +P Y  +  +P ++ 
Sbjct: 124 NMHFTNRRVDIIDEGFDIAIRMG-TLQDSSLIARRLCERREYVVGSPDYFTHYGQPHALS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  +             +W   VD    E RI    + NS  +++   + G G+A 
Sbjct: 183 ELSRHRCL--------AGTRDHWRFDVDGVRREIRIDGPWRGNSGPALLDATLKGLGLAQ 234

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPDY V  +     L+ +++        V+  YP     + K++ F +++  + 
Sbjct: 235 LPDYYVDQHLARGELISVLDAYRHDDTAVWAVYPRHRHRSPKVRQFLDYLVTEL 288


>gi|212636430|ref|YP_002312955.1| regulatory protein LysR:LysR substrate-binding [Shewanella
           piezotolerans WP3]
 gi|212557914|gb|ACJ30368.1| Regulatory protein, LysR:LysR, substrate-binding [Shewanella
           piezotolerans WP3]
          Length = 313

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 137/291 (47%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    +     +   +    G L++  +   G   +   L EF+  +P++++
Sbjct: 65  LLYAQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMAKHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y++    P   +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLAASPSYVEQHGMPSRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    V G G+  
Sbjct: 184 QLVDHNCLVY---QGEWHEHSVWQFKQGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV I+++  +T    +   YP       K+ AF +FI
Sbjct: 241 LASYLLEDEIAKGTLVPILDEWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|218691805|ref|YP_002400017.1| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|218429369|emb|CAR10186.1| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|312948080|gb|ADR28907.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|320193967|gb|EFW68600.1| LysR family transcriptional regulator YhjC [Escherichia coli
           WV_060327]
 gi|324007326|gb|EGB76545.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
          Length = 323

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARSLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|91785149|ref|YP_560355.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689103|gb|ABE32303.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 327

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 123/293 (41%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +R+F   A+ GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G
Sbjct: 3   NLGDIRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYP++ 
Sbjct: 63  RLYLNCCRQALQSLDDAEAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L +   ++  +  D AIR   P Q SSL+ RKL        A+P Y+    EP   
Sbjct: 123 FALTLSDSLANLVQEDIDLAIRFGVP-QDSSLVARKLAPNRRVLCASPEYIARKGEPKDP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I          E         +    P  +  + N      ++ + G GI +
Sbjct: 182 HDLANFDCIVLATATGLANEWRFTRGDEVQHYTVPFETARETNDGAVAREWALRGYGIVI 241

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + V+ +     L  ++     P   ++  Y        +++   +F+  +
Sbjct: 242 KSMWDVEADLRADGLKILLPQWRYPDAPLHALYHRNRFMAPRVRVLLDFLSER 294


>gi|66045716|ref|YP_235557.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256423|gb|AAY37519.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 305

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 IRLEIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASHEYLEQHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +Q L +H +I +            ++A     +       + VNS    +  C  G G+
Sbjct: 180 DLQALAQHQVIEYFSTSTGKRYGLEFMAD-GMGVAHASACSIAVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V     +  LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVAAQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWLVE 292


>gi|153834509|ref|ZP_01987176.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148869095|gb|EDL68134.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 314

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 125/291 (42%), Gaps = 7/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  +FT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVIFSALIKHKNFTAAAKSLGVSVSHVSKQLSQLEASLGIKLVQRTTRSFTPTEAGQTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +V   + +  +E++    + +G +R+  +   G   +   ++E    YP +Q+++
Sbjct: 68  YHHCEQVVQAVSSATLEMESQRDEVAGLVRLGLSQSFGTLHIIPAIQELREKYPQLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     I ++L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMLEEGLDLWITNNEHLP-EGYIAQRLADCQFVVAASPDYLLKHDTPTEPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +                 ++ +         V+   ++    + G GIA L  
Sbjct: 187 SQHNCLIYRSWERDYTSWA--FTNREQELNVKVSGNYSVDLAEAVRDAAIAGWGIAYLAT 244

Query: 247 YIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y++ D   +  L++++ D   + S   Y  YP       K+ A   FI  K
Sbjct: 245 YLLGDEFRSGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVIEFIKQK 295


>gi|77460858|ref|YP_350365.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384861|gb|ABA76374.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 301

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 133/295 (45%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + V+  V  SGS T AA Q  +S + +   +  LE  +G++L  R  R   LT
Sbjct: 1   MDL-FQSMSVYVKVVESGSMTAAALQCEMSTTMVGNHLRALEQRLGVQLLQRTTRRQRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  ++   EV   +  ++   +++  +P G LR+   +  G   L   L EF L  P
Sbjct: 60  EFGSVYYQRCLEVLGLVADSERLAEQTLDEPRGILRVTAPLTFGVERLAPALSEFSLQCP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ +IL N+  D+     D A RL      S+LI R L+   +   A+P Y+     P
Sbjct: 120 QVKLDVILTNRRPDLLESGLDVAFRLGH-FDQSNLIARPLIDYTLTVCASPEYVARRGMP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVL 237
           L+ +EL +H+ ++F        +       +  P GE  +     + +NS   + Q    
Sbjct: 179 LTPEELRQHDCLSFAYPAGDDWQSVEKQWRLSGPDGEIMVDVKGPMLINSSAGLHQAART 238

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G GI +LPD +V+    +  LV +M D   P+  ++  Y        KL+ F  F
Sbjct: 239 GMGIVMLPDALVEQDLRDGRLVVVMPDYQPPNRPMHLLYAPDRYRLPKLRRFVEF 293


>gi|167841327|ref|ZP_02468011.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 324

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 140/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G++L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q  + KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 61  EGAAYYEHCIKIITEIAETDASFQVGNRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP+
Sbjct: 121 IVLDLGLSDRPVDPVEEGIDCMIRVG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D RP+       + VN   + +   V G G
Sbjct: 180 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGRPVEVRMNGAVTVNDSDAYVTCGVEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L+ ++         +   YP+    + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGTLLEVLPGFNPKPKPISIVYPDNRHLSAKVRVFADWIAE 292


>gi|73538510|ref|YP_298877.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72121847|gb|AAZ64033.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 318

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +  +  V   G  + AA ++ LS+S IS++IS LE E+G+ L  R  R    +
Sbjct: 1   MSLRTEDIEAYLHVVELGGISAAARRMGLSKSVISKRISDLERELGVSLLQRSTRSTRPS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +        +L+     + +++ +  G+LR+   +  G   L   +  F   +P
Sbjct: 61  ENGCYFYEQARAALRQLDHAAQTVSDAAGELRGELRVLAPMTFGTRWLSPLIAAFARAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L LD+K +D+  +  D AIR+ + +  SSLI R+L         +P Y      P
Sbjct: 121 RMNLILELDDKLVDVGYERYDVAIRITR-LGDSSLIARRLTVSRRVLCCSPEYAARAGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I+++ +H  + + +  P  +  F                    N+   +    + G G
Sbjct: 180 QGIEDIAQHACLAYSNSPPAHVWAFAAGDEHGSVRSIAPRGVFTANNGEVLRDAALAGQG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP +IV D+     LV ++  +      ++  YP +   + KL+    ++
Sbjct: 240 LAVLPRFIVWDDLHAGRLVEVLPHLPPVDDGIFAVYPRSGFGSVKLRTLVQYL 292


>gi|323491566|ref|ZP_08096745.1| LysR family substrate binding transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
 gi|323314142|gb|EGA67227.1| LysR family substrate binding transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
          Length = 302

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +++  +F  VA+  SF+ AAE L +S+S +S QI  LE E+   L  R  R + LT
Sbjct: 4   MHKRFERYALFGEVAKQLSFSKAAENLGISRSYLSSQIHQLEQELETSLLIRSTRSVRLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G K+      +   +   + EL  +     G LRI          L     +F   YP
Sbjct: 64  AAGEKILTKMQGINESILQLEKELDHTKSTVGGLLRITAPTIFSHRYLIEICHQFQQQYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+  L +     D++    D AIR        ++I +KL+       A+P YL     P
Sbjct: 124 DIEFDLDIGYTREDLTKSNFDLAIRATN-TPPENMIAKKLIPYQHVCCASPDYLATHGIP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              Q+L +HN ++        +  + +  T ++ I       + +N  L I+   + G G
Sbjct: 183 THPQQLTQHNCLS-----DPNLRHWQFTNTSNQMIEVATDGNMLINDNLLILDAALKGKG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +P Y+V+   DN  L +I+ D      ++Y  YP  L+ + KL AF +F+
Sbjct: 238 VIKMPCYLVQPALDNGQLQQILSDYQMTQSSIYLIYPPQLRRSTKLSAFVDFV 290


>gi|152970578|ref|YP_001335687.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330015459|ref|ZP_08308161.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150955427|gb|ABR77457.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328531680|gb|EGF58511.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 296

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 139/292 (47%), Gaps = 14/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F  V   GSFT AA+ L + + ++S+ I  +E ++G+KL +R  R L++T +G 
Sbjct: 2   IEYLNIFVQVVEQGSFTRAADILQIHRPTVSKAIQQIEDDLGVKLIHRTTRKLSVTAEGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V  ++          ++ P G+LRI   + L   +L  NLK F  LYPDI +
Sbjct: 62  AFYHRARLVLSEVNDMMASF-SPTLPPRGRLRIDVPLALAHAILIPNLKHFQSLYPDIDV 120

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+  +K  D+  +  DC +RL + +Q SS I R+L  I M   AAP YL+    P ++ 
Sbjct: 121 ILVSSDKKTDLISEGVDCLVRLGE-LQDSSFISRRLGDIRMVTCAAPSYLQQYGRPETLA 179

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGI-- 241
           +LD+H  I F        +   W  T D  I   R +  + V++   ++   + G GI  
Sbjct: 180 DLDQHRAINF--FSDHSRDVMEWKFTKDGKIVSLRPVGSMLVDNSDILLSCGLAGLGIIQ 237

Query: 242 ----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               AL P      +  L  I+    + S  V   YP+    + K++ F ++
Sbjct: 238 ATFNALAPHIA---SGALEEILTQYPSVSKPVSVLYPDRHYLSPKVRVFIDW 286


>gi|17549218|ref|NP_522558.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431470|emb|CAD18148.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 306

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 129/292 (44%), Gaps = 6/292 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A +GS + AA  L ++  ++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 10  ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++     L ++  +P G LR+  T+  G+  +   + E++  YP + +QL
Sbjct: 70  LEHARRILGEIDDLDQLLTQAKGRPRGLLRVNATLGFGRRHIAPAISEYVRQYPGVDVQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  IR  +P   + +I RK+        AAP YL+    PL+  +L
Sbjct: 130 QLTADPPPLNEDAFDVCIRFGEP-PDARIIARKVAPNRRLLCAAPDYLRRHGTPLAPADL 188

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +HN I    G          +   T  R         L  N     + + + G GI + 
Sbjct: 189 ARHNCIGIRQGSDAYGVWRLTSGKGTKRRTETVHVRGNLTTNDGEIAVNWALEGHGIVMR 248

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + V+       LV+++    TP   +Y  Y +  + + +++ F  F+  +
Sbjct: 249 AQWDVERYLRGGQLVQVLPLYATPEADIYAVYLQRHQLSPRIRLFVEFLAGR 300


>gi|332531567|ref|ZP_08407464.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332038930|gb|EGI75359.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 310

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 137/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +  F  VARSG F+ A+  L +  +++SR+++ LE  +G++LF R  R + LT+
Sbjct: 1   MDRFDAITAFVAVARSGGFSAASRALGIPVANVSRKVALLEEALGVRLFVRTTRHVALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +     S V   +     E+     +P G L I   +  GQ  LQ  + EFL  YP 
Sbjct: 61  GGKRYFETCSRVIDAMREADEEVSGEYREPKGDLVITAPLGFGQQHLQPVVHEFLRAYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +QL LD++ + +  ++ DCA+R+   +  SSL+ R+L +I +   AAP YL+    PL
Sbjct: 121 VNVQLQLDDRVLPLVEEHVDCALRIG-TLADSSLVARELGSIRLVVCAAPAYLEARGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  L  H+ I++  L       F        R    P    L  ++  S +Q  + G G
Sbjct: 180 ELSALAVHDGISWTGLGLHKSWTFTLRQGGQLREQQVPVPVRLATSTPESALQAAIAGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +     Y V  +     LV ++    +    V   YP       KL+AF +F
Sbjct: 240 LVQATSYQVAPHVAAGRLVPVLTAHDSEPLPVSLVYPSKRLIPLKLRAFLDF 291


>gi|315182209|gb|ADT89122.1| transcriptional regulator, LysR family protein [Vibrio furnissii
           NCTC 11218]
          Length = 302

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 137/294 (46%), Gaps = 11/294 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V    SFT AAE L+L  S++SRQ+  LE  +G++L  R  R L LT+
Sbjct: 1   MDIVKSIQVFQQVVEDQSFTRAAENLNLVPSAVSRQVGELEKWLGVRLVNRTTRSLHLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +     +E+  ++E  +    E     SGK++I   + +GQ ++   L EF   +PD
Sbjct: 61  DGRRYLEKMAEISSQIEALKALN-EDKSHLSGKVKITAPMMVGQIIVPDLLSEFKARHPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L N+  D+  +  D AIR    +  SS   RK+  I     A+  YLKN     
Sbjct: 120 ISLSLTLMNRKADLIEEGFDVAIRAGN-LSDSSFFARKIGDIAFKTVASRAYLKNSPPLN 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              +L +HN I    L         W   V+  I   ++S  ++ N    I+ +   G G
Sbjct: 179 EPSDLCEHNCIINAALSNSK----RWSYKVNHKIKAIKVSGDIESNESACILSFVRAGLG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +A+LP+  V+++     L+ ++ D  +    +   YP     +  ++A  +++ 
Sbjct: 235 LAMLPEIYVREDLASGRLIEVLSDFASEPLPLNVIYPSNRLQSPTIRALIDYLV 288


>gi|218707150|ref|YP_002414669.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|300897309|ref|ZP_07115743.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|218434247|emb|CAR15165.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|284923546|emb|CBG36641.1| LysR-family transcriptional regulator [Escherichia coli 042]
 gi|300358915|gb|EFJ74785.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
          Length = 323

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR     +   +I R L  + +   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGASPED-GVIARPLGKLTVVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLIYPQRRELSRRVNLFMQWLAGVMKEY 321


>gi|226945169|ref|YP_002800242.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226720096|gb|ACO79267.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 297

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F + A SGS+  AAE+L LS   +++ ++ LE  +G +L  R  R  +LTE
Sbjct: 1   MDRLTSMGAFVMAAESGSYASAAERLGLSPQMVAKHVAALERRLGARLLNRTTRRQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +     +  + +      Q  +  P GKL+I+  +  G   L   + EFL  +P+
Sbjct: 61  LGSAYYERCKHILSEAQAADSLAQIMNDTPRGKLKISAPVTFGSYSLMPFVTEFLRQHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L L ++ +D+  +  +   R+  P+ +SSL  + L    + A AAP YL +   P 
Sbjct: 121 VEIDLHLTDRFVDLVEEGYEVTFRIG-PLAASSLTAKPLAPYRLVACAAPSYLTDRGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
              +L  H  + +         D  W+      +   + +  LQVN   +++   + G G
Sbjct: 180 IPGDLKNHECLGYAYWSRPA--DREWVFCKGSAVERVQVVGRLQVNESKALLSAALDGFG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I L P+  ++    +  LVR++ D   PS  ++  Y    + T KL+ F +    +
Sbjct: 238 IVLGPEDFLEPALRSGELVRLLADYEAPSRQMHLLYTANRQKTAKLRRFIDAALAR 293


>gi|221209837|ref|ZP_03582818.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
 gi|221170525|gb|EEE02991.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
          Length = 303

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 132/299 (44%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT 
Sbjct: 1   MDHLQAMRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTV 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   L+  +   +E+   P G +R+        + +   L +F   YPD
Sbjct: 61  EGTTYYERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHHVIPALPDFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + + ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+  Y      P 
Sbjct: 121 LRVVISMTDRFVDLVADGIDCAVRVG-TLSDTSLVARRIGEMAQLNCASRDYAARHGLPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  EL  H  + +         D+ +       +   ++ S + VNS  + +  CV G G
Sbjct: 180 TPDELPDHVAVGYFSSRTGRELDWEYTDMDTGDVHTVKMRSIVSVNSSQAYLACCVAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   P   ++    +  LV ++ +   P   V   +P       +++ F +++     D
Sbjct: 240 MIQAPRDGLEPLLADGTLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWLAETLGD 298


>gi|149374844|ref|ZP_01892617.1| probable transcriptional regulator [Marinobacter algicola DG893]
 gi|149360733|gb|EDM49184.1| probable transcriptional regulator [Marinobacter algicola DG893]
          Length = 304

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 141/297 (47%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  V   GSF+ AA    L+ S+ S+ I+ LE  +G KL +R  R + LT +G 
Sbjct: 9   LAAMEIFSTVVEQGSFSKAARVCRLTPSAASKAITRLEKRLGTKLIHRSTRQMQLTAEGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  +     SSV+P+G LRI  +  +G   L   + +FL  YP I +
Sbjct: 69  WFYERCRHILSDLEEAEQ-GASSSVEPTGHLRITASFPVGHGFLIPIVTKFLARYPGITL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +++  ++ D AIR   P+ +S+L+ RKL    M    AP YL+    P++++
Sbjct: 128 ELSLTDQVVNLLAEHTDVAIRNG-PLGNSNLVARKLGETRMVIVGAPEYLERRGVPVTLE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  HN + F            W  T D    E      L V+   ++ +  + G G+A 
Sbjct: 187 ELRTHNRLGFNF----SRHTATWPLTFDGEQTELAPQGSLLVSDGETMRKMAMEGVGLAR 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           L  ++V ++     LV +ME+        V+  +  +     G+++ F +F++   R
Sbjct: 243 LTRFLVDEDIRQGRLVPVMEEHNPGDREEVHAVFLGQGRLMPGRVRVFLDFLYDNIR 299


>gi|323975077|gb|EGB70186.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
          Length = 299

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 136/299 (45%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL  +P 
Sbjct: 61  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I   L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LSEDGVIACPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPNDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 297


>gi|323174169|gb|EFZ59797.1| hypothetical protein ECLT68_1382 [Escherichia coli LT-68]
          Length = 299

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 61  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|312881192|ref|ZP_07740990.1| transcriptional Regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309371084|gb|EFP98538.1| transcriptional Regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 289

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 132/298 (44%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  +D +  F  VA +  F+ AA +L ++ S ISR++S LE ++G+ L  R  R + LT
Sbjct: 1   MSM-FDGIPEFLAVAETQGFSSAARRLGVATSQISRRVSDLEAKLGVALVARTTRKVKLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++ ++L+           K +G LR+    D  +  +   L EF+  + 
Sbjct: 60  EAGLTYYEYCHDIVNQLDQANEIATAGQGKLNGTLRVTAAGDFTETHIVPALIEFVAQHS 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++++  D + ID   +  D AIR    +  S+LI RKL      A A+P YL+    P
Sbjct: 120 ELELEINHDTRMIDFVEENYDFAIRFG-TLPDSNLIARKLSDHPYAAAASPEYLEKFGIP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + QEL KH  IT          +       +  I       ++ NS  +++  C  G G
Sbjct: 179 QTPQELTKHQCIT-------TTYNRWTFQHNNEDINVSVKGKVKANSIKTLISACKSGLG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  LP   + +N     LV I+E       + +  Y +      + +    F+  K R
Sbjct: 232 ILYLPQSTLAENFEAGQLVPILEPYWKCRGSTWIVYSDRKYLPARSRLAIEFLIAKFR 289


>gi|104781076|ref|YP_607574.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110063|emb|CAK14768.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 306

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 136/302 (45%), Gaps = 9/302 (2%)

Query: 1   MSFDWDKLRV-----FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M+  +D L++     F + A +GSFT AA Q  ++ +++SR ++ LE  +G++LF R  R
Sbjct: 1   MTRHFDDLQLGSLELFCLAADAGSFTEAATQAGVTPAAVSRSVARLEERLGVRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + L+E G   ++   +   +L   + ++    ++PSG+LRI+       + L   L  F
Sbjct: 61  QMRLSEAGQAYYQQCRQALGQLVEAERQVAGGQLEPSGRLRISAPTPYAHHRLLPLLPRF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              Y  +Q+ + + N+++D + +  D AIR R P   S L+ R+L    +     P YL 
Sbjct: 121 RERYTQVQVDVHVSNRNVDFAEEPFDLAIRGRAP-ADSRLVARRLEDAELVIVGTPGYLA 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P +  +L +H+ I F          +++         + +     +  +L+     
Sbjct: 180 RKGVPRTPADLAEHDCIQFEMPSSGRRPPWSFRQDGQVVEIDTQGGLTCLGDFLATSTLA 239

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G G+     + V+D   +  LV ++ D    S      YP+A     K++ F +F+  
Sbjct: 240 RHGGGLMQAYRFTVQDALASGELVEVLGDYGGTSRPFMLVYPQARHMPLKVRVFIDFLVA 299

Query: 293 KA 294
             
Sbjct: 300 AV 301


>gi|33596048|ref|NP_883691.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33601440|ref|NP_889000.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33573051|emb|CAE36693.1| probable LysR-family transcriptional regulator [Bordetella
           parapertussis]
 gi|33575876|emb|CAE32954.1| probable LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 306

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L++F  +   GSF+ AA  L + +++ +  I  LE  +G +L  R  R +  T 
Sbjct: 1   MDRFDSLQLFTRIVELGSFSRAAAALDIPRATATHAIKQLEARLGARLLDRTTRHVRATP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  +L+  Q  LQ  +  P G LR+         ++   + +F   YP 
Sbjct: 61  DGQAFYERCVHVLSELDDAQSSLQRVASNPRGLLRVDMHSTHATKIVLPRIDDFRARYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + +   ++ +D+  +  DC IR   P + SSL+ R+L  +     A+P YL     P 
Sbjct: 121 IDLAVSGGDRLVDLVREGIDCVIRAGNP-RDSSLVARRLAVMPQVICASPEYLAAFGAPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              EL  H ++ F         D+     +   I    +   + V+   + +   + G G
Sbjct: 180 HPDELAAHRVVKF--FAASAAVDYPLELRIGGEIRAFALNGWISVSDAENYVVCALRGCG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  LP + V+D+     LV ++ D  +P   V   YP     + +++ F +++
Sbjct: 238 LIQLPRFHVEDDLRAGRLVEVLSDWPSPDLPVSALYPSHRHLSPRVRVFVDWL 290


>gi|167578175|ref|ZP_02371049.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 299

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFIEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    +     + +    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLADHVATVVAKPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNEV-DPSLIARRLGTCRSVLCASPGYLAEHGAPRQPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++  + G GIALLP 
Sbjct: 185 ARHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAAIAGGGIALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      L R++ D   P   +Y  Y    +    ++A  +F+  +  D
Sbjct: 241 FAAAEPIRAGTLARVLPDCAAPDLGIYAVYASRKQMPLAMRAMIDFLAERFGD 293


>gi|83716864|ref|YP_439738.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|257142876|ref|ZP_05591138.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650689|gb|ABC34753.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 299

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFIEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    +     + +    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLADHVATVVAKPDDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNEV-DPSLIARRLGTCRSVLCASPGYLAEHGAPRQPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++  + G GIALLP 
Sbjct: 185 ARHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAAIAGGGIALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      L R++ D   P   +Y  Y    +    ++A  +F+  +  D
Sbjct: 241 FAAAEPIRAGTLARVLPDCAAPDLGIYAVYASRKQMPLAMRAMIDFLAERFGD 293


>gi|329905937|ref|ZP_08274303.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547399|gb|EGF32226.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 304

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GSF  A   L +S + ++R ++ LE  +G +L  R  R L+LTE
Sbjct: 1   MDRLQSMRVFAKVVEQGSFAGAGLALDMSNAVVTRHVADLEKHLGARLLNRTTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G      T ++   ++         S KP+G LRI + +  GQ  L   L  + LL+P+
Sbjct: 61  TGLIYLERTKQILQDIDDADAMASSQSNKPAGTLRIYSHLGFGQLQLAQLLPRYALLFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L +  +D+  +  D  + +      +S+I R++    +   A+P Y++    PL
Sbjct: 121 VKLDVTLSDHTVDLVEEGFDIGMFIELQKFDASMIARQIGLSDIILCASPDYIRLHGTPL 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +++ +H  + F     +       L    R +  P  S L  N    + Q  + G GI
Sbjct: 181 EPEDISQHVCLNFAYEQLRHHWS---LIINKRSVDVPITSKLVSNDGNLLRQCALAGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +   + + D+     LVR++      +  V   YP   + + K+++F +FI
Sbjct: 238 VIRSSFTLGDDLSSGRLVRLLPQHHLGTLAVTMVYPSRRQLSAKVRSFIDFI 289


>gi|320173086|gb|EFW48305.1| LysR family transcriptional regulator YhjC [Shigella dysenteriae
           CDC 74-1112]
          Length = 299

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAIQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   EV   L       Q+ +   SG LRI     + +NLL   L EFL L+P 
Sbjct: 61  EGMTYYQRAKEVLSNLNELDGLFQQDATSISGILRIDIPPGIAKNLLLPRLSEFLYLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|227327903|ref|ZP_03831927.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 297

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 137/291 (47%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L LSQS++S  I GLE  +G++L  R  R +  TE G
Sbjct: 5   NFNDLISFLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL       +  +E+  I L +   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  EKLAHSLGPHFADIESELIALGDMRERPAGNIRITAGEHAVDSVLWPVLKPFLANYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI +   D  IRL + ++   +  R    + M    +P+Y      P + 
Sbjct: 125 VEITMDNALADIVLGRFDAGIRLGEQVEKDMIAVRVAPEMSMAVVGSPNYFARNLAPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W    +    + R+   L +NS    +   ++G G+A
Sbjct: 185 QDLQHHRCINM--RLPTMGGIYAWEFEKNGREIKVRVEGQLTMNSLRQRIDAALIGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V+D+     L R++ +  +P    Y  YP   ++T     F   +
Sbjct: 243 YVPEDAVRDDIASGRLTRVLTEWCSPFPGYYLYYPSRKQHTTAFSLFVEAL 293


>gi|300692442|ref|YP_003753437.1| transcriptional regulator, lysR family [Ralstonia solanacearum
           PSI07]
 gi|299079502|emb|CBJ52180.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 305

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 144/299 (48%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE E+ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAAARLDLPKSSVSRGIAALEQELNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S     +E       E    P GK+R+    D+G+ L+   +  F+  YPDI
Sbjct: 61  GQSLYQVASHALEDIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMQQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTARNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQKQGVPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H+ + F        +    L   D        + L  +S   +      G+GI 
Sbjct: 180 VRDLGHHSCLDFRGTGRGETQWR--LVGPDGLKTVAVRARLNADSLSYLETLIASGAGIG 237

Query: 243 LLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP Y   + + N   P LVR++ D  T    ++   P A     +++   + +    R
Sbjct: 238 PLPLYAGGVARANAPLPRLVRVLPDYATSGEPLHLVTPTARFIPKRVRLLIDMLTESIR 296


>gi|262276494|ref|ZP_06054303.1| transcriptional regulator LysR family in formaldehyde
           detoxification operon [Grimontia hollisae CIP 101886]
 gi|262220302|gb|EEY71618.1| transcriptional regulator LysR family in formaldehyde
           detoxification operon [Grimontia hollisae CIP 101886]
          Length = 295

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 142/297 (47%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS DW  +  F  V  + SFT AA++L  S + ISRQIS LE  +  +L +R  R ++ T
Sbjct: 1   MS-DWQGVSEFLAVVETASFTKAAKRLGASTAHISRQISLLEERLNTRLLFRTTRKVSTT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   ++    +   L+  +I + +    P+G +++   +  G+ ++   + +F+  YP
Sbjct: 60  EEGDIYYQHCRLLADGLKEAEIAVTQLHETPNGHIKLTAPVTYGEKVVMPLILDFMDAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQI + L N  +D+     D A+RL + +  SS++ ++L T  +    +P YL     P
Sbjct: 120 EIQIDVDLTNATLDLVDASCDVALRLGR-LTDSSMVCKRLSTRRLIVCGSPAYLSKHGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ EL +HN +       +   D+       +         L+ NS ++++   + G G
Sbjct: 179 HTLSELAQHNCL-------RGQHDYWRFREEGKERSVRVRGLLRCNSGIALLDAAIRGKG 231

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  LPDY + D   +  +V+++         ++  +P       ++K   +F+  K 
Sbjct: 232 LIQLPDYYLNDALASGKVVKVLNAYEDMEEGIWALFPHRRLQPLRVKLLVDFLAAKL 288


>gi|241664539|ref|YP_002982899.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240866566|gb|ACS64227.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 306

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 128/292 (43%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V   GS + AAE + +S+  IS+ ++ LE  +  +L  R  R L+LTE
Sbjct: 1   MDRLSDVAIFVQVVERGSLSAAAEAMGMSRGVISKALARLEARLQTRLLQRTTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+     + E    ++  +  +     +  G LR++        LL   L  F   YP 
Sbjct: 61  AGAAFFEKSREGLALVDAAEQAVSALRDEARGTLRVSAPASYAVTLLAPLLGAFQARYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI L ++++  D+     D AIR+   ++ SSL+ R+L       Y AP Y +    P 
Sbjct: 121 VQIDLDMNDRYADLVAGRIDVAIRIGM-LEDSSLVARRLANCAHAIYGAPSYFRERGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L  HN + + +       D+                 +  N+ L + +    G G+
Sbjct: 180 SPEDLRNHNCLVYANY--DGPHDWVLTDAAGHRHIAHVAGSMLANNSLVLREAARSGLGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +L P Y+V+D+     L  ++ D       ++  + + +    K++AF +F+
Sbjct: 238 SLGPAYLVRDDVAAGRLQAVLTDYTAREVPLHAVFTQRVHLLPKVRAFVDFL 289


>gi|289673125|ref|ZP_06494015.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
          Length = 298

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + VF +VA + SFT A ++L +S S I + I  LE  +G++LF+R  R + LT +G
Sbjct: 3   SLGSIAVFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +LE  ++EL  +   P G+LRI+    L   L+   + +F+  YPDI+
Sbjct: 63  SIFLERCRRILSELEAAEMELSNARDLPKGRLRISLP--LVSGLVMPVIIDFMRTYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P   
Sbjct: 121 LDIDFSDRMVDIIEEGFDIVLRTGDPG-DSGLMSKRMGSFQLRIVGAPDYFARHAIPRHP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +          E +           E     +  N+   ++     G GIA 
Sbjct: 180 GDLSQHACLLHKFPSTGRFEHWPLRREAGVDDLE-LPQAMVCNTTEILVDVARAGLGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD+++     N  L+ +++D    + T    +P +   + +L+ F +F+  
Sbjct: 239 LPDFMISSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFMHA 290


>gi|226939579|ref|YP_002794652.1| transcriptional regulator, LysR family [Laribacter hongkongensis
           HLHK9]
 gi|226714505|gb|ACO73643.1| Probable transcriptional regulator, LysR family [Laribacter
           hongkongensis HLHK9]
          Length = 298

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D+ +L+ F  V + GS + AA Q  +  + I R++  LE  +G++L  R  R LTLT
Sbjct: 1   MS-DFRQLQTFVEVVKQGSLSAAARQEGVVPAVIGRRLDALEERLGVRLLVRTTRRLTLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +  +L   +  +      P G LR+      G+  +  ++  F    P
Sbjct: 60  QEGAAFFEDCQRLLTELAEAEAAVASGVQGPKGHLRVTAPAGFGRRHVAPHVASFQRANP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ L L ++ +D+  +  D AIR+   +  SSL+  +L        AAP YL     P
Sbjct: 120 DIRVTLDLSDRLVDLLAERVDVAIRISD-LADSSLVAVRLAENRRVVVAAPAYLARHGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+ ++L + + +T G   P+            + +       L  N    +  + + G G
Sbjct: 179 LTPEDLSRFDCLTLGASQPRGWS----FVVAGKLVNWKVSGLLACNDGAVLHDWALKGLG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + VKD+     LV +++   +P + V    P+      + +AF   +
Sbjct: 235 LAWRSLWEVKDDLTEGRLVTVLDAFSSPDYPVCAVVPQRKYLPLRTRAFIGHL 287


>gi|121601186|ref|YP_992570.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|121229996|gb|ABM52514.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
          Length = 327

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 137/298 (45%), Gaps = 6/298 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T
Sbjct: 28  PMDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPT 87

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ L+     +   +E  +   + S V PSG LR+     +G+ ++   L EFL  YP
Sbjct: 88  QDGAALYERCLRLIADVEEAENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYP 147

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P
Sbjct: 148 QISVELGVTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVP 206

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L++H  + +       +  + W+   +      R + + VNS  + +  C+ G G
Sbjct: 207 RTPADLERHRPVNYASPSNGRVAPWEWVEGDEVKRVALR-ARVTVNSAEAYIACCLAGLG 265

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  +P Y V  +     LV ++ D       +   YP     + + + F  ++    R
Sbjct: 266 LIQIPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLR 323


>gi|170734910|ref|YP_001774024.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820948|gb|ACA95529.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 310

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F+ AA+ + ++   +SR I+ LE  + I+LF R  R ++LTE+G + +
Sbjct: 12  ISVFAAVVDAGTFSAAADVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVSLTEEGRRFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE              GKLRI     + + +L   L  F+  +P+++I+LI
Sbjct: 72  EQVMPHLAGLEEAATAAAGGVSAVRGKLRINLDPVVYRAILGPRLDVFMDAHPELEIELI 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
             +   D+ MD  D A+R  +P ++SSLI RKL+   +   AAP Y+     P   ++L 
Sbjct: 132 ARDSLGDLVMDGFDLAVRFGEP-RASSLIARKLLDTGVVTVAAPSYIARRGRPAKPEDLE 190

Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              H  + F +  P+  + F W     R  I       L VN   +++  C+ GSGIA +
Sbjct: 191 DRHHRCLEFRN--PETGKPFAWEFHRKRKRIVVDTRGRLTVNDPGALLNACLAGSGIAQM 248

Query: 245 ----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                + ++ D   L+ +  +     + +Y  YP       K +AF +F+  
Sbjct: 249 LLLGAEPLIAD-GRLINLFPEWADERYPLYAYYPSRHHVPAKTRAFLDFMVE 299


>gi|307129404|ref|YP_003881420.1| transcriptional regulator [Dickeya dadantii 3937]
 gi|306526933|gb|ADM96863.1| Transcriptional regulator [Dickeya dadantii 3937]
          Length = 305

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 146/301 (48%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S  ++SR ++ LE  +G +LF R +R L LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARVMGVSVPTVSRAVARLEERLGGRLFNRTSRQLALTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    SE+Y + E  + E  E SV+P G++R+A  +  G   +   L E +  +P++ 
Sbjct: 66  QSMAAKASEMYRQAEEVESEAHELSVQPRGQVRLAVPMSFGLRWVVPLLPELIRQFPELS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+  +  D A+R+   +  SSL+ R+L  +  +  AAP YL     P   
Sbjct: 126 VDLHLSDASVDLIAEGFDAALRIAA-LPDSSLVARRLCAVTQYLVAAPAYLAEHSAPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL      ++       +  F   +     I       L+V +  +++   + G GIA 
Sbjct: 185 RELSGRQCFSYAYRARSQVWRFTHHSGAQEDI--VPNGPLRVTNSDALLPSLLAGQGIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWK 298
           LP++I  +     +LV ++++       +YF  P +     K+K   +F   +L   +W+
Sbjct: 243 LPEFIAAEYLKAGSLVHLLDEWSMTQGGLYFVTPTSRSRPLKVKVLSDFFAKYLSEPEWR 302

Query: 299 F 299
           +
Sbjct: 303 W 303


>gi|91776925|ref|YP_546681.1| LysR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710912|gb|ABE50840.1| transcriptional regulator, LysR family [Methylobacillus flagellatus
           KT]
          Length = 298

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 137/298 (45%), Gaps = 8/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+++  VF  V ++GSF+ AA QL L  S++S +++ LE  +G+ L  R  R L LTE 
Sbjct: 1   MDFNEAAVFVKVVQAGSFSAAARQLQLPTSTVSTRVARLEQRLGVTLLQRTTRRLNLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       S     L   +  L  +  KP G+LR+    DLG +LL G ++     +P +
Sbjct: 61  GRAYFAHASIGLGYLLEAEAALDAARQKPQGRLRVTAPADLGDSLLAGLVQRLQQQHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++LIL ++ +D+  +  D AIR  + ++ SSLI + L       +A+  YL +      
Sbjct: 121 EVELILTDRYMDLVAEGIDAAIRTGE-LRDSSLIAKPLGMARWAMFASRAYLASSPRLQQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L++H  + F  +          L   +  +  P       NS   +    + G G+A
Sbjct: 180 PQDLNQHRCLQFSPMGRDGWT----LRRGEDIMTIPLTGSTMANSIGIVRNMALNGQGVA 235

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LLP YI K      +L R++      +  V+  YP       KL A  +    + R W
Sbjct: 236 LLPTYICKTELAIGSLERVLPQWQAQADPVHLVYPRQRFMPPKLLALIDMAQAELRPW 293


>gi|260556241|ref|ZP_05828460.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260410296|gb|EEX03595.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 298

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 10/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +  +F  VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+
Sbjct: 1   MDRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPD
Sbjct: 61  DGQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL   +   D+     DC +R+ + + +SSLI R +  + M   A+P YL++   P 
Sbjct: 121 IHLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASPQYLQDYGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L++H LI +   + +   +F +             S L VN+  + +     G GI
Sbjct: 180 QLNDLEQHKLINYAGAVGEKQGEFIYQGGT-----VMMDSALSVNNTEAYIAAACAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y V+D      LV ++     PS  +   YP       +L+ F N++
Sbjct: 235 IQLPYYDVQDKIERGILVEVLSAYSAPSLPLNILYPNRSYIPKRLEVFMNWV 286


>gi|146281936|ref|YP_001172089.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145570141|gb|ABP79247.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501]
          Length = 299

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 132/289 (45%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  V   GSF  AAE+L +S S +SRQI+ LE  +  +L YR  R ++LTE G 
Sbjct: 4   WEGLDEFVAVVECGSFMRAAERLRVSSSHVSRQIARLEERLQARLLYRTTRRVSLTEAGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +   + + +    P+G LR+   +  G+  +   + EF+  +P +++
Sbjct: 64  TFFARCQRLIEERDDAFLAISDLHSAPTGLLRMTAAVAYGERFIVPLVNEFMARHPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL K +  S L+  ++    M+  AAP YL+    P ++ 
Sbjct: 124 DIELSNRTLDLVQEGYDLAIRLGK-LGESRLVAARIAPRAMYLCAAPGYLERYGRPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +           D     +  R          + NS  +++   + G G+  L
Sbjct: 183 ELARHNCLI-------GTSDVWSFQSDGREQHFKPSGNWRCNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V +      LV ++E    P   V+  YP+      K++     +
Sbjct: 236 PDYYVLEPLRRGELVSLLEANQPPDTAVWAVYPQRRYPLPKVRLLVEAL 284


>gi|218662867|ref|ZP_03518797.1| LysR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 297

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 134/292 (45%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE
Sbjct: 1   MDTLTRIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  S++  +++     ++E++ +  G+LRI+         +  +L +F    P+
Sbjct: 61  AGHTYYRTASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLIDFARENPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H  A P +L       
Sbjct: 121 VSLEIAADDRFVDLIEEGFDVAIRITK-LEDSGMIARKISDFRIHLCATPEFLTRYPNIE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              ++     I   D   +      +    +          ++VNS  + ++  + G GI
Sbjct: 180 HPSDISNVPFIV--DTNARSQASIRFYNPDNTSFAVAVSGPIEVNSPHATLRAALAGIGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +PD+I +   ++  LV +  D I     +Y  YP       K++ F +++
Sbjct: 238 AFIPDFIARKPIESGELVTLFNDYIPTDRGIYAVYPHRRYLPAKVRIFVDYL 289


>gi|116686287|ref|YP_839534.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116652002|gb|ABK12641.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 11/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F+ AA+ + ++   +SR I+ LE  + I+LF R  R ++LTE+G + +
Sbjct: 12  ISVFAAVVDAGTFSAAADVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVSLTEEGRRFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE         +    GKLRI     + + +L   L  F+  +P+++I+LI
Sbjct: 72  EQVMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRAILGPRLDAFMDAHPELEIELI 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
             +   D+ MD  D A+R  +P ++SSLI RKL+   +   AAP Y+     P   ++L 
Sbjct: 132 ARDSLGDLVMDGFDLAVRFGEP-RASSLIARKLLDTGVVTVAAPSYIARRGRPAKPEDLE 190

Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              H  + F +  P+  + F W     R  I       L VN   +++  C+ GSGIA +
Sbjct: 191 DRHHRCLEFRN--PETGKPFAWEFHRKRKRIVVDTRGRLTVNDPGALLNACLAGSGIAQM 248

Query: 245 ----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                + ++ D   L+ +  +     + +Y  YP       K +AF +FI
Sbjct: 249 LLLGAEPLIAD-GRLINLFPEWADERYPLYAYYPSRHHVPAKTRAFLDFI 297


>gi|270262695|ref|ZP_06190966.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043379|gb|EFA16472.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 302

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 134/298 (44%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + VF  V   GSF+  AE++ LS + +   I  LE  +GI+L  R  R  +LT+
Sbjct: 1   MDKLESMSVFVRVVERGSFSAVAEEMRLSGTMVGLHIKALEKHLGIRLLNRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  ++    +   +E T+         P G+L++   +  G + L      FL  +P+
Sbjct: 61  FGSAYYQSCRRILADIEDTESVALALHQSPRGRLKVGCPVSFGVHALSPATARFLTNWPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+L +K +D++ +  D  I++ +    +SL+ R L        A+P YL+    P+
Sbjct: 121 MTLDLVLSDKTMDMAEEGLDVMIKVGELEHVNSLVARPLAAYRSVICASPAYLERAGTPV 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H  + F   +         L    + I  P    + VN+  ++    + G GI
Sbjct: 181 HPEELIEHRCLGFAHPLAGSEWS---LQQGGKLIKVPVNIVMAVNNGEALRSAALNGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            + P+ ++ ++     L+ ++ +    +  V+       +   K++ + +F+    ++
Sbjct: 238 LMQPEVLLAEDLRQGRLIPLLPEHQPLAKPVHILTFADRQQLPKIRLYVDFLLQHFKE 295


>gi|190892094|ref|YP_001978636.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697373|gb|ACE91458.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 297

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 133/287 (46%), Gaps = 6/287 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VAR  SFT AA +L +SQS++S  I GLE  +G++L  R  R ++ TE G +
Sbjct: 7   DDLIAFLAVAREQSFTKAAAKLGVSQSALSHTIRGLEARLGLRLLTRTTRSVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       + ++E++   L     KP+G +RI        ++L   L+ FL  YPD++I+
Sbjct: 67  LLVSIGPRFDEIESSLTALSAFRDKPAGTIRINAGEHAANSVLWPALERFLPEYPDVRIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+D    DI  +  D  +RL + +    +  R    + M    AP Y     +PL+  +
Sbjct: 127 IIVDYGLTDIVAERYDAGVRLGEQVAKDMVAVRIGPDMRMAVVGAPTYFDGRPKPLTPHD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN I     +P     + W    D      R+   L  N+    ++  + G+G+A L
Sbjct: 187 LTDHNCINL--RLPTYGGVYVWEFEKDGRELNVRVEGQLVFNNIALRLKAALAGTGLAYL 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P+  V+   +N  LVR++ED   P    +  YP     +       +
Sbjct: 245 PEDAVQAHLENGQLVRVLEDWCPPFPGYHLYYPSRRHASAAFAVVVD 291


>gi|104782411|ref|YP_608909.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95111398|emb|CAK16118.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 303

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 139/288 (48%), Gaps = 7/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A + L +S S++ ++++ LE  +G++LF+R  R +TLT +G+     
Sbjct: 9   VFNRVAETRSFVAAGQSLGISASAVGKRVARLEARLGVRLFHRSTRSITLTAEGALFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +  ++E T+  L ++S  P G+LR++        L+   L EF+  YPDI++ L   
Sbjct: 69  SRRILAEIEATEQALSQASGTPRGRLRVSLPQ--VTGLVMPALAEFMARYPDIELDLDFS 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +DI  +  D  +R  +P+  S L  + L        A+P YL+    P   +EL  H
Sbjct: 127 DRMVDIVGEGFDVVMRGGQPL-DSRLNAKFLGHFQHCLVASPQYLRERGTPQHPRELAAH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + +       +E +           +  IS +  N   + + + +   GI  LPD+ V
Sbjct: 186 SCLHYRFPSSGKLETWPLRREHPEQDYDIPIS-MVCNHVETRVCFALNHRGITCLPDFNV 244

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +    + +LV +++  +    + Y  +P   +   KL+ F +F+  + 
Sbjct: 245 RKELASGSLVSVLDSFMERRGSFYLLWPSGRQMPPKLRVFIDFMLERV 292


>gi|322831688|ref|YP_004211715.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166889|gb|ADW72588.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 297

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 142/300 (47%), Gaps = 9/300 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R F  V  SGSF+ AAE + L +S+++RQ+  LE+E+G+KL +R +R L++TE
Sbjct: 1   MDKLENMRTFVQVVDSGSFSRAAELMDLPKSTVTRQVQALESELGVKLLHRTSRRLSMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG   +     +  ++E     +Q ++  P GK+R+     +    +   L  FL+ YPD
Sbjct: 61  QGEAYYHGAIRLLDQMEILDSNVQAATQAPRGKIRVEMPNAIAYRRVIPALPGFLMHYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+++ + N+  D+     DC IR+ + + + +LI R L  + M   AAP YL+    P 
Sbjct: 121 VQVEVSVGNRTADLIAQNIDCVIRIGE-LHNDALIARSLGVLPMITCAAPAYLQKHGMPE 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
             Q+L   H L+      P+    F      D+     R      VN   + +   + G 
Sbjct: 180 HPQDLILDHTLVQIAS--PQTGRVFEHQVFKDQQCVTVRGRWQFSVNDSTAALTGAIAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+     ++ +   DN  LV +  +       V+  +PE      K++ F  ++    ++
Sbjct: 238 GVLTTYRFLAQEALDNGALVPLFPEWADEQVPVHIAWPENRHLPSKVRYFIEWVRALFQE 297


>gi|317403959|gb|EFV84423.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 296

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 130/297 (43%), Gaps = 7/297 (2%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D    L  F ++AR  + +  A QL L+  + +++++ LE  +G++L  R  R ++L
Sbjct: 1   MNHDLASSLEFFVLLARHRNLSTVARQLDLTPPAATKRLAQLEARLGVRLVNRTTRSISL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G       + +   +   +  +  S   P G LRI  T+  G+  +   + EF L +
Sbjct: 61  TPEGETYLHYATRILADVREMEEVVSSSGSVPKGLLRINATLGFGRTAIAPIVSEFALHH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++QL + ++ ID+     D  IR    +    L+ R++++      AAP YL     
Sbjct: 121 PQVEVQLDVTDRPIDLVESGVDLGIRFGA-LPDQRLVARRVLSNRRFLCAAPRYLARHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+++L  H  I                    R         L  N    ++ + + G 
Sbjct: 180 PASLRDLADHQCIIHRQNEDAYGVWR--FTRDGRAETVKVHGALSSNDGDIVLNWALDGH 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI +  ++ +    ++  L  ++ + I PS  ++  YP     + + +AF +F+  +
Sbjct: 238 GILVRSEWDLAKYLESGRLRVVLPEFILPSADLFVYYPSKRDLSARTRAFIDFLMAR 294


>gi|113968592|ref|YP_732385.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113883276|gb|ABI37328.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 305

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 139/297 (46%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +++F  VA   SFT A+  L LS++ +S  ++  ET +G +L  R  R + LT
Sbjct: 1   MQDRLQAMQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +     +    +  +   Q  + + SG+LR+  +  + +NL+  +L EF+  YP
Sbjct: 61  QDGISCYERCKNLLTDYQELESLFQLQAAQVSGRLRVDMSTGIARNLVLPHLPEFIEQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ +DI  +  DC IR+   +Q   +I +K+    M    +P Y++   +P
Sbjct: 121 QIELELSSTDRKVDIVAEGFDCVIRVGS-VQQEGVIAKKIGHFKMLNCVSPSYIEKYGKP 179

Query: 181 LSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLG 238
            S++EL + H LI +   +      F +L+  +  +    +  L  VN+  +    C+ G
Sbjct: 180 SSLEELSQWHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKLITVNNADAYSAACLAG 239

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI   P+  V        L+ I+ D   PS  V   YP     + +L+ F  ++  
Sbjct: 240 LGIIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVFMAWLTE 296


>gi|319782542|ref|YP_004142018.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168430|gb|ADV11968.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 297

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 137/300 (45%), Gaps = 13/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R+F  V    SFT AA  L L +S+ +  I  LE  +G +L  R  R +  T+
Sbjct: 1   MDRLDTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +  ++E  +   + +  +P G LRI  +  L +  L   L EFL  YP 
Sbjct: 61  DGEAYYRRCLSILAEIEDAEAAFRNA--EPFGLLRIDASTLLTRTFLLPRLPEFLDRYPR 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +Q+   ++ +D+  +  DC IR+ +P   S +I R+L  IH    A+P YL+    P 
Sbjct: 119 IDLQIGQSDRLVDLVREGVDCVIRVGEP-PDSGMIMRRLAMIHEITCASPAYLERHGTPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S   LD H  + F  +  +  E   +  TV   I E R+   +  N+  +      LG G
Sbjct: 178 SPDALDGHQAVGF--VSSRTGETLPFEFTVAGNIREVRLPGRVAANNSDTAADLARLGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKA 294
           +   P Y  + +     LV ++ D       +   YP+  + + +L+ F ++   IF +A
Sbjct: 236 LIQAPRYRFEKDLAEGTLVEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWASRIFAEA 295


>gi|238763049|ref|ZP_04624016.1| transcriptional regulator [Yersinia kristensenii ATCC 33638]
 gi|238698807|gb|EEP91557.1| transcriptional regulator [Yersinia kristensenii ATCC 33638]
          Length = 310

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 10/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  +GSF+  A QL +S S+ISR +S LE  +  +L  R  R L L+E G 
Sbjct: 10  LSEMAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++ +  + +     +      + + +P G +RI+    +G+ ++  ++ EFL  Y  I +
Sbjct: 70  EVFKRCNAMLCAANSVMEVSGQYNQEPEGLIRISVPKAVGRFVIHPHIFEFLRRYSKIDV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L LD++ +D+  D  D AIR+      S +I R+L+ I     A P YL     PL   
Sbjct: 130 ELRLDDRYVDLIDDNVDLAIRITDQ-PPSGMIGRQLMNIEHLLCATPEYLAAHGVPLHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ I  G+        F       + +          N     +   +   GI  L
Sbjct: 189 DLVQHSCIYLGETPGDARWKFR---QGTKTVTVAAKGRYAANHTGVRLDAVLQHMGIGSL 245

Query: 245 PDYIVK---DNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P +  +       +V+++ D     + S  ++  YP       KL+ F ++I  + RD
Sbjct: 246 PYFTARTALQQGLVVQVLPDWRFISSYSGGLWLLYPPTRYLPPKLRVFIDYIVGRLRD 303


>gi|300312244|ref|YP_003776336.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075029|gb|ADJ64428.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 293

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 145/298 (48%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   ++LR F  V  +G+ + AAE L  + S +SR +S LE ++G  L  R  R + LT
Sbjct: 1   MSLQSEELRTFVAVVEAGTLSAAAELLAQTTSGVSRALSRLEDKLGASLLTRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E+ Q  ++  + KP GKLR+  +     + +  ++ +F   YP
Sbjct: 61  EEGRAFLEQARAILAAMESAQDSIRLRTRKPVGKLRVDASAPFMLHCVVPHVGQFRAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  +++ ID+    AD AIR+ + +Q SSL  R L +  ++  A+P YL    EP
Sbjct: 121 DIELELTTNDRFIDLVEHRADIAIRIGE-LQDSSLHARALSSARLNVVASPAYLARHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++ L++H LI F              A  DR    P    ++ +S  +I    + G G
Sbjct: 180 ESVEALEQHQLIGFSQPDQLNHWPLRHSAG-DRYQTRP---AIRASSGETIRHLALQGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L +++   +     LVR++    +     +   Y  + + + ++  F +F+  K 
Sbjct: 236 IACLSNFMSDADIAAGRLVRLLPQADSGYRQKISAVYYYSTQLSRRISCFLDFLQEKL 293


>gi|209516804|ref|ZP_03265655.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209502767|gb|EEA02772.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 330

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 9/290 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  GSF  A ++L + +S++SR +  LE ++  +LF R  R  +LT +G   ++  
Sbjct: 29  FLAVANEGSFAKAGDRLGIGRSAVSRNVQKLEAQLDARLFLRTTRSTSLTREGELFYQNC 88

Query: 71  SEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                ++     +++E  +  P G LRI +T   G+ ++   L+ F   YPDI ++L+L+
Sbjct: 89  HPGVERIVQALEDMRELRNGPPRGHLRICSTPGFGRKIVAPLLRGFRSRYPDIALELLLN 148

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D   D  D   R  + ++ S ++ ++L+ + M   A+P Y K    P  + +L +H
Sbjct: 149 DRPADFIADRVDVGFRDGR-MEDSEVVAKQLIPMQMIVCASPQYAKKHGVPRHVDDLAQH 207

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             I F     +     +W   VD  I +    +    N    I+Q  + G GIA LP Y 
Sbjct: 208 RCINFRSASGRVS---DWEFKVDGLIQKQLPRAQHTFNDVDLIVQAVLDGEGIAQLPAYQ 264

Query: 249 VKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V D      L+  +          Y CY        +++ F +++  + R
Sbjct: 265 VCDLLRREHLISCLAQYAPDDRGHYVCYLSRKHLPARIRVFIDYMAEQTR 314


>gi|152971928|ref|YP_001337037.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956777|gb|ABR78807.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 303

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 133/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V   GSFT AA +L LS   + + I+ LE+++  +L  R+ R  +LT+
Sbjct: 1   MDKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  ++   +  ++   + P+G LR++     G +++      FL  +P 
Sbjct: 61  AGRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+ +D+  +  D AIR+ + I    L+ R L    M   AAP YL     P 
Sbjct: 121 VRVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H  ++      +       L  V+  +   R + L+ N   ++ Q  + G+G+
Sbjct: 180 TPEDLTDHLCLSHTVWTARNEWR---LPGVEGEVRWKRDAVLRCNDGYALRQAAIAGAGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + P+ ++ D   + +LVR++E        V+  + +  +   KL  F   +
Sbjct: 237 LMQPEVLLADALASGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQFIAHL 288


>gi|160895718|ref|YP_001561300.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361302|gb|ABX32915.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 337

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 141/299 (47%), Gaps = 6/299 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++++F  VA   SFT AA+ + L ++S+S+ +  LE  +G +L +R  R + LT+ G 
Sbjct: 33  LEQMQIFSRVAEMASFTRAADSMGLPKASVSQAVQQLEARLGTRLLHRTTRRVQLTQDGQ 92

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    ++   ++  Q + Q++   P  GK+R+  T  L ++++   L + L  +P ++
Sbjct: 93  ACYERCQDLLADVDEFQGQFQQAGDAPLQGKVRLDMTTGLARHVVMPLLPQLLQSHPALE 152

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L    + +D+  +  DC +RL  P+    L+ R L  + +   A+P Y++    P ++
Sbjct: 153 LELSCTERRVDLVREGFDCVLRLG-PVDEPGLVARPLGLVALATCASPGYVQAHGLPATL 211

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H L+ +   +      F +     +P   P    L VN+  + +  C  G G+  
Sbjct: 212 QDLGGHRLVHYQRTLGARPLGFEY-EEDGQPRYLPMAGALTVNNAEAYLAACQAGLGLIQ 270

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +P   V+   D   LV ++     P   +Y  Y +  +   +++   +++      W  
Sbjct: 271 VPRLAVQPLLDAGELVEVLPRHPPPPMPLYLIYAQRRQLPRRVRVLMDWLAEAVLPWTL 329


>gi|69209774|gb|AAP70013.2| LysR-like protein [Klebsiella pneumoniae]
          Length = 304

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 141/293 (48%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPGYLKARGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H+ I  G      +      A       + ++   +VNS + + Q  +   GIA+
Sbjct: 182 KELSDHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV---RVNSPIMVKQLALDDFGIAM 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L +   K    N  LV I+++     F VY  Y    +    + AF +F   +
Sbjct: 239 LSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISAFLDFFVKR 291


>gi|290475341|ref|YP_003468229.1| transcriptional regulator [Xenorhabdus bovienii SS-2004]
 gi|289174662|emb|CBJ81456.1| Transcriptional regulator [Xenorhabdus bovienii SS-2004]
          Length = 316

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 5/278 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F + A+ GSFT AAE+L L++S++ + ++ LE  +G+KLF R  R L+LT +G    + 
Sbjct: 12  AFVMTAQLGSFTAAAERLGLTKSAVGKSLNRLEERLGLKLFQRSTRSLSLTPEGDIFLQS 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE  +  +      P G+LRI      G+  +   L      YP++ + +   
Sbjct: 72  CQNAIAILEQAEAGIASHITSPIGRLRIDLPAAFGRQRILPILLNITKEYPELTLSVSFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +D+  D  D  IR+ +   SS LI R+L T  +   A P YL+    P S  EL++H
Sbjct: 132 ERFVDVIEDGIDLVIRIGELADSSGLIARRLTTQKLVICATPDYLQRRGIPTSSDELNQH 191

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + I                 + ++ I  P     ++    +++   + G G+A LP ++V
Sbjct: 192 HCIVGFRRHQPFHWCLRITNSNNKNITPP--PTYELADGDAMLTAVLAGCGLAQLPLWMV 249

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
                +  L  ++ +       +   +P+      K++
Sbjct: 250 NRYLKSGELKTVLPEYSGAEVPISAIWPKNRHLLPKIR 287


>gi|326318947|ref|YP_004236619.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375783|gb|ADX48052.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 321

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 128/292 (43%), Gaps = 4/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L ++  V   GSF+ AA  L L +S +SR+++ LE  +G++L  R  R +++TE G
Sbjct: 3   DLNDLGLYAAVVTHGSFSAAARALGLPKSKLSRRVAELEQRLGVRLLQRSTRAVSVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +    V    +      + ++ +PSG++R+++ + +    L   L  FL  +P +Q
Sbjct: 63  AAFFKHCEAVTQAAQAAFDVAERATDRPSGRIRVSSPVGVAHMFLAPLLPAFLKQHPGVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N+ +D+  +  D A+R+R  +  S L+ R L        AAP  L     P ++
Sbjct: 123 VDLDLTNRRVDLIAEGYDVALRIRSALDDSELVVRMLGASPQVLVAAPALLAEHARPSTL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L     +                   D    E R   L  +    +    + GSGIA 
Sbjct: 183 AQLAGAPGLGPRGTGGAAPRWRIQPPGGDWAEVEYR-PVLVSDDIHLLHTAALAGSGIAQ 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP ++  D      L  ++ D   P+  ++  YP        ++AF + +  
Sbjct: 242 LPAHVCADGIAQGRLQHLLADHTLPTHQLHAVYPSRKGVVPAVRAFIDHLVQ 293


>gi|257485224|ref|ZP_05639265.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331010879|gb|EGH90935.1| regulatory protein LysR, substrate-binding protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 298

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + VF +VA + SFT A ++L +S S + + I  LE  +G++LF+R  R + +T +G
Sbjct: 3   SLGSIAVFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEEGLGVRLFHRSTRSIAMTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +LET ++EL  +   P G+LRI+    L   L+   + EF+  YPDI+
Sbjct: 63  SIFLERCRRILSELETAEMELSNARDLPRGRLRISLP--LVSGLVMPVIIEFMRTYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R   P   S L+ R++    +    AP Y      P   
Sbjct: 121 LDIDFSDRMVDIIEEGFDIVLRTGDPG-DSGLMSRRMGGFQLKIVGAPDYFSRRGTPQHP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +          E +           +     +  N+   ++     G GIA 
Sbjct: 180 ADLSRHACLLHKFPSSGKFEHWPLRREAGADDLD-LPQVMVCNTTEILVDVARAGLGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD+++     +  LV I+ D    + +    +P +   + +L+ F +F+  
Sbjct: 239 LPDFMISSAIRSGELVPILTDYTVHTGSFRLLWPSSKHLSLRLRVFIDFMHA 290


>gi|170693395|ref|ZP_02884554.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141550|gb|EDT09719.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 330

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 124/293 (42%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +R+F   A+ GS + A  ++ L+ ++ S +++ LE  +  +LF R  R L LT++G
Sbjct: 3   NLGDIRLFVEAAQQGSLSAAGRKMGLTPAAASARLAKLEAGLKARLFERTTRQLRLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +    L+  +  LQ       GK+R++ T D G+NLL   L EF  LYP++ 
Sbjct: 63  RLYLNCCRQALQSLDDAKAALQAGQGVVRGKVRVSATSDFGRNLLMHWLDEFNALYPEVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L +   ++  +  D AIR   P Q SSL+ RKL        A+P Y+    EP   
Sbjct: 123 FALTLSDSLSNLVQEDIDLAIRFGVP-QDSSLVARKLAPNRRVLCASPEYISRKGEPEDP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I          E         +    P  +  + N      ++ + G GI +
Sbjct: 182 HDLANFDCIVLNTGSGPANEWRFTRGDEVQNYTVPLETARETNDGAVAREWALRGYGIVI 241

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + V+ +     L  ++ +   P   ++  Y        +++   +F+  +
Sbjct: 242 KSMWDVEADLRADGLKILLPEWRYPDAPLHALYHRNRFMAPRVRVLLDFLSER 294


>gi|325922885|ref|ZP_08184605.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325546639|gb|EGD17773.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 344

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 133/297 (44%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +   +F  V   GSF  AA  L L ++++SR++  LET +G +L +R  R + LT
Sbjct: 1   MIHDLNDTLIFVKVVEQGSFIAAANALGLPKTTVSRKVQELETRLGARLLHRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  H     +  +LE  +  + +    P G LR      LG   +   L EF   YP
Sbjct: 61  EAGSVYHEHCQRIARELEEAESAVGQLQSGPRGWLRFTVPYSLGITWIAPLLGEFHAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + L N+ +D+    AD A+R+   +  S+L+ RKL ++    +A+P Y++   EP
Sbjct: 121 EIQLDMHLGNEKLDLIGGEADLALRVGA-LPDSNLVARKLGSLRTQVFASPSYIERYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
           L   EL  H  +            F W  +    + + P    +  N   ++    + G 
Sbjct: 180 LHPDELQFHRTLALRKNRNVHNNRFFWSLSDGSDVRDFPVNPLMVANDPAALNGAVLCGE 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  D + K    +  + R++     P       +      + K++AF +F+  +
Sbjct: 240 GLLLTGDVMAKPFVQSGLVRRVLAGWTGPEVDFNAVFAGGRLVSPKVRAFVDFLVTR 296


>gi|319795554|ref|YP_004157194.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598017|gb|ADU39083.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 323

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V  +GSF  AA+ L +S++S+SR I  LE+ +G +L  R  R +  TE
Sbjct: 1   MDRLSAMQAFVAVVEAGSFVGAADALGISKTSVSRLIVDLESHLGTRLLQRTTRRVRTTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +     S +   LE  + E+   ++ P G LR++  +  G   L   L  +   YPD
Sbjct: 61  AGERFFARASLLLSDLEEAESEVTWRTLTPHGVLRVSVPLSFGPRYLAPLLPLYRNQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++   +  +D+  D  D AIR        + + R L  + +   A+P Y+     P 
Sbjct: 121 VELEVSSTDHLVDLVDDGFDLAIR-GAWQHGETYVARHLAPLRIVICASPGYVAMHGAPP 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L  HN +T    I   + +    +     +  P    ++ +S   ++   + G GI
Sbjct: 180 TPDALAAHNCLT---KISGAVSETWTFSRTGDTVAVPVRGSMRADSDDILLTAALAGEGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P ++  D+    +LV ++ D   P  T+   YP     + K++ F  F+
Sbjct: 237 VAMPTFMAGDDIAKGDLVPLLLDWQYPPATLMAVYPTRRYLSAKVRTFVEFM 288


>gi|271500360|ref|YP_003333385.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343915|gb|ACZ76680.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 296

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 131/294 (44%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  GS T AA +L +S+S  +R I+ LE  +G++L +R  R L LT 
Sbjct: 1   MDRLIAMQVFVAVADLGSLTAAANKLDISRSMATRYIAALEHWLGVRLLHRSTRSLGLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ +     ++    E         + +P G +R+A+++  GQ+ L   L  +   YP 
Sbjct: 61  VGNDMLVRCRQILALSEDMAALSSSGNTEPHGVIRVASSVSFGQSYLAQALGRYRARYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
              +LIL ++ I ++ +  D A+ +       +LI + L        A+P YL +   P 
Sbjct: 121 TTTELILTDRAIKLAEERIDLAVEVTNS-PDPNLIAKPLGRCASVVCASPDYLAHHAPPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +HN +    L  +            R +   R+     N  L ++     G GI
Sbjct: 180 TPNDLVRHNCLNHIRLGREWRFTHRESGAQHRVMVSGRVVA---NDTLVLLTAARAGEGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A LP+++V+   D   LV ++ D  T +  +Y CY         L+   +F+  
Sbjct: 237 ACLPEFVVRGGLDAGELVPLLGDYQTQALGIYACYMSRRHMPATLRTLLDFLVQ 290


>gi|237747105|ref|ZP_04577585.1| transcription regulator protein [Oxalobacter formigenes HOxBLS]
 gi|229378456|gb|EEO28547.1| transcription regulator protein [Oxalobacter formigenes HOxBLS]
          Length = 303

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F   A  GS   A+  L ++   + R+I  LE  +GIKL +R  R LTLTE
Sbjct: 1   MDKIKQIEAFVNAAEKGSLAKASLVLGITPVMLGRRIDALERRLGIKLMHRTTRHLTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+       ++  +L+  +  + E   K +G L ++     G+  +  +   FL   PD
Sbjct: 61  RGTVFLDHCRKILDELDQAEKMIGEGLNKATGHLIVSAPAAFGRKHVAPHAPAFLAANPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I   L ++ +D+  +  D +IR+   I   SL+  KL + H    A+P YLK    P 
Sbjct: 121 VKISFNLSDQVVDLVREGYDLSIRIGGTI-DPSLVAIKLCSNHRVVCASPDYLKKFGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++EL++HN +TF     +           +R +       L  N    +  +C+ G G+
Sbjct: 180 TLKELNQHNCLTFNLQGGQQRGWH--FKENNRTVIVRTSGNLDCNDGELLHHWCLEGYGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           A    + ++    +  LV ++++   P++ +   YP+ L    K + F +
Sbjct: 238 AWRSTWEIQSELASGKLVTVLDEFALPNYDIMAVYPQQLYLPLKTRLFID 287


>gi|53716023|ref|YP_104869.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53721051|ref|YP_110036.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|67642058|ref|ZP_00440820.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|76818084|ref|YP_336676.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121596750|ref|YP_990759.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124381405|ref|YP_001025243.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126446886|ref|YP_001077222.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126457194|ref|YP_001074058.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134284058|ref|ZP_01770753.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|166998999|ref|ZP_02264849.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167721907|ref|ZP_02405143.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167821636|ref|ZP_02453316.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167826451|ref|ZP_02457922.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167847965|ref|ZP_02473473.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167896518|ref|ZP_02483920.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167908380|ref|ZP_02495585.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167913202|ref|ZP_02500293.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167921148|ref|ZP_02508239.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|226193531|ref|ZP_03789136.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237509204|ref|ZP_04521919.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242313913|ref|ZP_04812930.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254179136|ref|ZP_04885789.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254185558|ref|ZP_04892145.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254192091|ref|ZP_04898589.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254192673|ref|ZP_04899109.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254204288|ref|ZP_04910646.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254209455|ref|ZP_04915800.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254265129|ref|ZP_04955994.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254301864|ref|ZP_04969306.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254359579|ref|ZP_04975851.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52211465|emb|CAH37455.1| putative LysR-family regulatory protein [Burkholderia pseudomallei
           K96243]
 gi|52421993|gb|AAU45563.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76582557|gb|ABA52031.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|121224548|gb|ABM48079.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|126230962|gb|ABN94375.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126239740|gb|ABO02852.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134244669|gb|EBA44768.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147744825|gb|EDK51907.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147749975|gb|EDK57047.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148028766|gb|EDK86726.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157825034|gb|EDO88926.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157987571|gb|EDO95338.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160694654|gb|EDP84663.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169649428|gb|EDS82121.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184209792|gb|EDU06835.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|225934413|gb|EEH30395.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|235001409|gb|EEP50833.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238523121|gb|EEP86561.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242137152|gb|EES23555.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243064817|gb|EES47003.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254216131|gb|EET05516.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|261826302|gb|ABM99172.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 305

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 142/292 (48%), Gaps = 9/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE G
Sbjct: 6   NLDDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++  T ++   ++    ++  +   P G LRI+++   G+++L   L  F   YP + 
Sbjct: 66  ERVYAWTEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLGFNERYPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I    LI ++L T +    A+P YL     P  +
Sbjct: 126 VRLDLFDRLVDVAGEGFDLDIRIGDEIAD-HLIAKRLATNYRVLCASPGYLARYGTPRQL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  +   +   +      W  TV       ++   L  N     +Q+ + G GI 
Sbjct: 185 ADLGAHQCLAIKE---RDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L   +       +  L R++ +   P+  V+  YP  L  + K++   +F+ 
Sbjct: 242 LRSIWEAGPLLASGELRRVLPEASQPA-NVWAVYPARLAASAKVRVCVDFLV 292


>gi|218662125|ref|ZP_03518055.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 308

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 142/299 (47%), Gaps = 13/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 11  DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVMLIQRTTRKLSLTAQG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  + LGQ +    + +FL  YP+IQ
Sbjct: 71  RAYYDRCSEPLAHLIDAEQALTETQRKPEGLLKISVPVILGQEVFYEFISDFLKAYPEIQ 130

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L + N  +D+  +  D  IR  + ++ S+++ ++L     +  AAP YLK    P   
Sbjct: 131 VDLFVTNLFLDLVAENIDLGIRFGE-LKDSTIVAQRLGKSVRYLVAAPDYLKEKALPAKP 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN-SYLSIMQYCVLGSGIA 242
           ++L  H  +       +      W     R   + R+S    +  + ++  +   G GI 
Sbjct: 190 EDLKDHRCVLLNGRNGEA----EWHLVSGRKSADVRVSGPASSRDFDAVSAFTYRGHGIG 245

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LLP     +      L+R++ D  +P   V+  YP       +L+ F + +    + WK
Sbjct: 246 LLPSTYCDEQIRRGALIRLLPDWSSPEIFVHAVYPTRRFLPLRLQVFLDAL----KAWK 300


>gi|170722406|ref|YP_001750094.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169760409|gb|ACA73725.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 299

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 140/298 (46%), Gaps = 8/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D +R+F  V   GSF+  A +L++ Q ++S+Q+  LE  +G  +F R  R L LT
Sbjct: 1   MDL-FDSMRIFARVVERGSFSAVARELNMGQPAVSKQVRALEHYLGGPVFARSTRHLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +QG + +    E+  +LE+          + SG LRIA  +  G+  +   +  FL  YP
Sbjct: 60  DQGQRFYSHCQEILRQLESATRSFASGQEQISGPLRIAAPVSYGRLCIAPLIGTFLQRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L L++ + D+ ++  D AIR+   ++S  L+   L T     YA+P YL+    P
Sbjct: 120 EVRIDLRLNDHNEDLLVENIDLAIRIG-VVKSEGLVAVSLGTTKRGVYASPTYLQCHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L   EL  HN I F  L       F                 +  NS  +I +  + G G
Sbjct: 179 LEPGELAAHNCIGFTLLEHYDRWRFT---RGTDEFDIAITGNVTSNSSEAIREMVLCGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I+L P ++ + +    ++  ++++    +  V   +    +++ +  AF +F+    +
Sbjct: 236 ISLSPQWLFEADVERGSVQSVLDNYQATALPVSAVFSRERRHSARAMAFIDFLREHLQ 293


>gi|284008190|emb|CBA74457.1| LysR family transcriptional regulator [Arsenophonus nasoniae]
          Length = 312

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 141/291 (48%), Gaps = 5/291 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + L VF   A + SF+  AE+LHL++SS++++I+ LE  +GI LF+R  R  +LT
Sbjct: 7   MKSVLNSLPVFVAAAEANSFSQTAEKLHLTRSSVAKKIAQLEARLGITLFHRTTRTQSLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+  +        ++E  +  L    ++  GK R++  +  G   +   L   +  YP
Sbjct: 67  EEGTLYYEYCRRALDEIEKIEDILNSGKLETCGKFRLSMPVLFGHLCIAPLLISLIKQYP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++  +++ ID+  +  D +I +     SS+L+ RK+    M   A+P YL    EP
Sbjct: 127 KLELEMSFNDRIIDLIEEGIDLSIYIGTLPDSSNLVARKIGKHRMTICASPSYLAQMGEP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I EL +H  + +       ++ +               + L ++   +I    +  +G
Sbjct: 187 QTIIELAQHFAVAYSH--SNRIQKWRLKDDNGGIYEFRPKTRLMMDDMQAIKDAIISDAG 244

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           IA LPD++V+    +  L  IM      +F++Y  +P+    + K++   +
Sbjct: 245 IAWLPDWLVRKELIDGRLKEIMPRAGEITFSIYAVWPKTPYLSRKVRLIVD 295


>gi|325916886|ref|ZP_08179134.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325536931|gb|EGD08679.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 325

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 138/293 (47%), Gaps = 6/293 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           S D  + LR F  VA  GSFT AAE L L ++S+S  +  LE  +G +L +R  R + LT
Sbjct: 22  SMDTMESLRAFLRVAELGSFTRAAETLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  ++ + ++   ++      Q    +  G+LR+  +  + +N +   L  FL  +P
Sbjct: 82  GDGAAFYQRSRDLLDDMDELHSMFQREHGQLRGRLRVDMSAGIARNFVIPALPAFLARHP 141

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++   ++ +D+  +  DC +R+   ++ +SL+ R L    + + A+  YL     P
Sbjct: 142 QLEVEISGTDRRVDVVREGFDCVLRVG-TLEDTSLVARPLGAFRIVSCASAEYLARRGMP 200

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L +H+L+ +   + +    F +       +  P    + VN+    +   + G G
Sbjct: 201 TCLDDLAQHDLVHYVPTLGQRSPGFEYYDGQAYHLL-PMRGPVTVNNGDGYLAAALAGLG 259

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   P   ++   D+  L+ ++ ++      V   + +      +++AF +++
Sbjct: 260 IIQAPASPLRPYLDSGALIEVLAELAPEPMPVTLLHAQRRHLPQRVRAFMDWV 312


>gi|299138082|ref|ZP_07031262.1| transcriptional regulator, LysR family [Acidobacterium sp.
           MP5ACTX8]
 gi|298600012|gb|EFI56170.1| transcriptional regulator, LysR family [Acidobacterium sp.
           MP5ACTX8]
          Length = 311

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 91/299 (30%), Positives = 140/299 (46%), Gaps = 12/299 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MSFD    + +     V RSG F  AA  L++SQ  ISR ++ LE +VGI+L  R  R +
Sbjct: 1   MSFDDRLLNGVSALAAVVRSGGFAAAARSLNVSQPGISRAVARLEAQVGIRLLERTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT++G + +     +   LE     L E  V   G+LR+       Q +L   L  FL 
Sbjct: 61  SLTDEGRRFYETIGPIVSALEDATSALAEGKVTVRGRLRVNMDPYFSQLILGPQLSGFLK 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP++++ L+      D+  D  D  IR  +P + S+L+ R+L+   +   A+P YLK  
Sbjct: 121 AYPELKVDLVTREGLGDLISDGYDLGIRFGEP-RPSTLVARRLLDTRVLTVASPGYLKKH 179

Query: 178 REPLSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQY 234
             P   Q+L  ++H +I F D  P+    F W+    R  I     S L ++   ++   
Sbjct: 180 GHPTDPQQLVAERHRMIDFRD--PETGRSFEWVFRKGRKEIKVETESQLMLSDVATMHAV 237

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           CV G GIA + +  V  +     LV +  D     F +Y  YP       K +AF  F+
Sbjct: 238 CVAGYGIAQVLELGVDAHLSSGRLVNLFPDWEDERFPLYAYYPSRQYLAPKTRAFLEFL 296


>gi|160873375|ref|YP_001552691.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160858897|gb|ABX47431.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315265603|gb|ADT92456.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 307

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 132/297 (44%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +++F  VA   SFT A+  L LS++ +S  ++  ET +G +L  R  R + LT
Sbjct: 1   MQDRLQAMQIFMRVAELQSFTQASVSLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +     +  + +  +   Q  + + SG+LR+  +  + +NL+   L EF+  YP
Sbjct: 61  QDGQSCYERCKSLLAEFQELESLFQLQAEQVSGRLRVDMSTGIARNLVIPKLAEFIEQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ +D+  +  DC IR+   +Q   LI +KL    M    +P Y+     P
Sbjct: 121 HIELELSSTDRKVDVIAEGFDCVIRVGS-VQQEGLIAKKLGHFKMQNCVSPAYIAQYGRP 179

Query: 181 LSIQE--LDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCV 236
            SI +  L  H L+ +   +      F + A  T    +       + VN+  +    C+
Sbjct: 180 ESIADLTLHNHKLVHYVSQLGGTDSGFEYQAPHTHQGSLTIQLPKLITVNNADAYSSACL 239

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  +P   V        LV I+ +   P   V   YP     + +L+ F  ++
Sbjct: 240 AGLGIIQVPSIGVAKYLHTGELVEILPNYPAPPMPVSLLYPHRRHLSKRLQVFMAWL 296


>gi|78062085|ref|YP_371993.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969970|gb|ABB11349.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 303

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT 
Sbjct: 1   MDHLQAMRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVALTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   L+  +   +++   P G +R+        N +   L  F   YPD
Sbjct: 61  EGATYYERCMRLLADLDDAETLFEDAGTTPRGAIRVDLPERFALNQVIPALPGFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++ +D+  D  DCA+R+   +  +SL+ R++  +     AAP YL+    P 
Sbjct: 121 LRVVIGTTDRFVDLVADGIDCAVRVGA-MSDTSLVARRIGELAQINCAAPAYLERHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S  EL  H  + +         D+ +       +   ++ S + VNS  + +  C+ G G
Sbjct: 180 SPDELPDHVAVGYFSSRTGRELDWEYADMDSGQLHAVKMRSVVSVNSSQAYLACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P   +     + +LV ++ +       V   +P       +++ F +++  
Sbjct: 240 LIQAPREGLGPLLADGSLVEVLPEWNAEPLPVSVVFPTGRHLAPRVRIFVDWLAE 294


>gi|167740866|ref|ZP_02413640.1| putative HTH-type transcriptional regulator YeaT [Burkholderia
           pseudomallei 14]
          Length = 305

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 142/292 (48%), Gaps = 9/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF VV R  SF+ AAEQL +S + +S++++ LE ++G +L +R  R + +TE G
Sbjct: 6   NLDDLRVFSVVVRLASFSAAAEQLAVSPAYVSKRVALLEKQLGTRLLHRSTRRVAVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++  T ++   ++    ++  +   P G LRI+++   G+++L   L  F   YP + 
Sbjct: 66  ERVYAWTEKILDDVDHLVEDVSTTRSVPRGTLRISSSFGFGRHVLAPALLGFNERYPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I    LI ++L T +    A+P YL     P  +
Sbjct: 126 VRLDLFDRLVDVAGEGFDLDIRIGDEIPD-HLIAKRLATNYRVLCASPGYLARYGTPRQL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  +   +   +      W  TV       ++   L  N     +Q+ + G GI 
Sbjct: 185 ADLGAHQCLAIKE---RDHPFGVWRLTVRGETSTVKVGGALSTNHGEVAVQWALAGRGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L   +       +  L R++ +   P+  V+  YP  L  + K++   +F+ 
Sbjct: 242 LRSIWEAGPLLASGELRRVLPEASQPA-NVWAIYPARLAASAKVRVCVDFLV 292


>gi|172064818|ref|YP_001815530.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997060|gb|ACB67977.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 305

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 144/303 (47%), Gaps = 12/303 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE+ +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLESRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     EVY + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTISEQAGEVYRRAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D A+R+   +  SSL+ R+L  +     A+P YL+    P   
Sbjct: 126 IDLHLSDASVDLIAEGFDAALRIAA-LPDSSLVARRLCAVTQFVVASPEYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGI 241
           +EL     +++       +    W  T D    EP +    L+V +  +++   + G  I
Sbjct: 185 RELADRPCLSYAYRARSAV----WRFTNDVGDEEPVMPTGPLRVTNSDALLPTLLDGLAI 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD-- 296
           A LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++      D  
Sbjct: 241 AELPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVTALSDYFAEHLSDPV 300

Query: 297 WKF 299
           W++
Sbjct: 301 WRW 303


>gi|326315097|ref|YP_004232769.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323371933|gb|ADX44202.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 313

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 134/293 (45%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  VA   SFT AAE L + ++S S  +  LET++G +L +R  R + LT+ G 
Sbjct: 4   FDRMHTFVRVAELASFTQAAEVLGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    ++   ++  Q   Q +      G++RI  +  + +N++   L E L  +P ++
Sbjct: 64  AYYERCKDLLADVDELQSMFQNADGGGLRGRVRIDMSTGMARNVVVPRLPELLARHPGLE 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L    + +D+  +  DC +R    +  +SL+ R L    +   A+P YL+    P ++
Sbjct: 124 VELSSTERRVDVVREGFDCVLRTGAVV-DASLVARPLGPARLVNCASPAYLRVHGTPQTL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H L+ F + +      F   A VD  +   P    L VN+  + +  C+ G GI 
Sbjct: 183 DDLGDHRLVHFVNTLGARSGGFE--AVVDGTLAAIPMQGALTVNNAEAYIAGCLAGLGII 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +P   V D      LV ++     P   +   Y        +++A  +++  
Sbjct: 241 QVPRLGVVDLLAQGALVEVLPQHAAPPMPLTLMYANRRNLPRRVRAVMDWLAE 293


>gi|262278736|ref|ZP_06056521.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259087|gb|EEY77820.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 296

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 132/293 (45%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR GSFT AA ++ +SQS++S  I GLE  +G+ L  R  R ++ T  G
Sbjct: 6   NYNDLYAFLMVAREGSFTKAAGKMGISQSALSHTIRGLEERLGMLLLTRTTRSVSPTAAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  S  + +++     L     +P+G +RI  +    + +L   L++    YPD+Q
Sbjct: 66  ERLKQTISASFDQIDNELSLLTSFRDQPAGTVRINASSHAIREVLIPKLEKIAGDYPDVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI  +  D  +R    +    +  R    + M   A P Y +    P + 
Sbjct: 126 VELAANSGMVDIVAERFDAGVRFGSRVADGMIAVRISADVKMAVIATPEYFEKYGIPATP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I +       +  + W    D    + +I      N    I++    G G+A
Sbjct: 186 KDLINHQCIGYRLTTQGSI--YAWEFMKDGQETKIKIQGQWIFNESYDIVEAVRAGFGLA 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +P  +++ +     LV+++++        +  YP   + +  L+   + +  
Sbjct: 244 YIPQELIQQDLDQGKLVQVLDEYSIQFPGYHLYYPHRRQLSPALRLVIDVLRE 296


>gi|126728661|ref|ZP_01744476.1| Transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
 gi|126710591|gb|EBA09642.1| Transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
          Length = 290

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 99/276 (35%), Positives = 165/276 (59%), Gaps = 4/276 (1%)

Query: 15  ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVY 74
           A +GS THA + LHLSQS++SRQ+  LE  +   LF+RHARGL LTEQG  L   TS + 
Sbjct: 2   ADAGSLTHAGDALHLSQSAVSRQVRALEEALNTTLFHRHARGLILTEQGELLFDATSSMV 61

Query: 75  HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDID 134
            ++++    +++S  +  G+L++ TT   G   L   L +    YPD++I L+L+ + +D
Sbjct: 62  KRIDSATARIRDSEEEVFGELKVTTTHGFGALWLAPRLTKLYEKYPDLKIDLMLEERVLD 121

Query: 135 ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF 194
           + M  AD AIR+++P Q+  LI+++L++I M  YA+P YL    EP  ++E+  H LI  
Sbjct: 122 LPMREADVAIRMKEPSQAD-LIRKRLMSIRMRMYASPDYLAEHGEPTRLEEMVTHRLICQ 180

Query: 195 GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPN 254
               P+ +     + ++   +     + L VN+Y  ++Q  +   GI +LPDYI++D P 
Sbjct: 181 KPGAPQVLAGEQLVQSL---LANDVQTTLTVNNYFGVLQATISNLGIGVLPDYIIEDFPT 237

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +VR++ D+ +    V+  YPE L+ + ++ AFR+F+
Sbjct: 238 MVRVLPDIESVEVPVFLAYPEELRQSKRVSAFRDFV 273


>gi|221069509|ref|ZP_03545614.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220714532|gb|EED69900.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 293

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  +   GS   AA+ L LS +++S+Q+  LE ++G  L  R  R ++LT+ G   +
Sbjct: 7   LRAFRRIVELGSIARAADALDLSSAALSKQLRALEAQLGAVLIQRTTRRMSLTDTGRAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +  +  ++  S +  G+LR+   +    + L   L  F+  +P +Q+ L 
Sbjct: 67  AECCRLLDGFDMLEQSVRAQSGQVMGRLRVNAPLSFALSTLAPLLARFMQRHPLLQLDLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D      D +IRL   +  SSLI R+L ++     A+P YL+    P S  EL 
Sbjct: 127 MEDRLVDAVGQGFDVSIRLSAELADSSLIARRLASLSQMLCASPAYLQQHGRPASTAELR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+ +             LA  D  +  P  +   VN+ L + +    G GI  LP +
Sbjct: 187 DHALLNYS------------LAQADDGLQVPSEARASVNNSLMLRELLEAGLGIGALPSF 234

Query: 248 IVK---DNPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +       L  + ++D   P   VY  YP       K++AF +F+  + 
Sbjct: 235 LARPAIAQGQLEALSLQDWAEPPRHVYVVYPTQRHLLPKVRAFVDFLAEEL 285


>gi|298486740|ref|ZP_07004796.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158607|gb|EFH99671.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 303

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L +R  R L LT
Sbjct: 1   MALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLHRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H         L     +L     +P G+LRIA   D         + +FL  YP
Sbjct: 61  QAGEDFHERCVGAVDGLMDAAEQLVSHREEPGGRLRIAAMADFFDFFSMEWVADFLAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 LVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDTMVASPAYIAAHGL 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+Q L  H  ++     P     +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLQSLHGHYCVSTAH--PGGSTVWRLLGPDAKMHEVQMASRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K RD
Sbjct: 238 GIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLRD 297


>gi|89899718|ref|YP_522189.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344455|gb|ABD68658.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 306

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 131/294 (44%), Gaps = 7/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSF  D + VF  VA   SFT AA+ L L ++S+S  +  LE  +G++L +R  R + LT
Sbjct: 1   MSF-LDHMLVFSRVAELLSFTQAADSLGLPKASVSNAVQQLENRLGVRLLHRTTRKVVLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G   +    +    ++  Q   Q +SS    G++R+  +  + +  +   L + L  +
Sbjct: 60  HDGQSFYERCKDALSDMDELQTMFQLQSSNALKGRIRLDMSTVVARQAVLPRLPDLLQQH 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +QI++    + +D+  +  DC +R  K +    LI R +  + M    +P Y+     
Sbjct: 120 PQLQIEISSTERRVDLVREGFDCVVRAGK-VTEPGLIARPVGDLRMANCVSPGYMARFGV 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+++L KH L+ +   +   +  F     V   I  P    + VN+  +    C+   
Sbjct: 179 PHSLEDLAKHTLVHYTATLGAKVSGFE-CTQVGEEIAIPMQGPITVNNAEAYQAACLASL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P   V++      LV ++     P   +   Y      + +++   +++
Sbjct: 238 GIIQVPFVGVRELIAQGQLVEVLTGWTAPPMPLSLVYAHRRNLSTRVRVVMDWL 291


>gi|330446294|ref|ZP_08309946.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490485|dbj|GAA04443.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 304

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 127/292 (43%), Gaps = 9/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++ VF  + +  SFT AA+ L +S++ +S+ +  LE  +G++L  R  R   LTE G  
Sbjct: 6   QQMVVFNALTKQQSFTKAAQLLEISRTQVSKLVQQLEERLGVQLVQRTTRSFALTESGRI 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   +V  ++   + EL        G LR+        N +   + EF   +P + ++
Sbjct: 66  FAKHCEKVVDEINEAESELLALGDSQQGSLRVGIAQSFASNHVAPYINEFHERHPLVNLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+  +  D  I           + R L        A+P YL     P    +
Sbjct: 126 LSLFDHRVDLIAEQLDLWIGFMDS-PPEGFVARHLTNCDFVLVASPDYLAKHGVPYHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +HN IT+     +  +D  W  ++     + +++   +V+S  +I    + G+G+  L
Sbjct: 185 LKQHNCITY---FSRERKDNIWNFSLKEEELQVKVTGNYRVDSADAIRDATIAGNGVGYL 241

Query: 245 PDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             Y++KD   +  L+R+M +  +T    +Y  YP       K+  F  FI  
Sbjct: 242 ATYLLKDEIRHGKLIRLMPEWQLTQHMPLYAVYPRHKYLPTKVNLFIEFIRE 293


>gi|322833016|ref|YP_004213043.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321168217|gb|ADW73916.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 295

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF   A  GSF  AAE L +S   +++ I+ LE+ +G  L  R  R   LT+
Sbjct: 1   MDRLTSMNVFVRTADLGSFAAAAEALRISPQMVAKHIARLESRLGTALINRTTRRQHLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  + E       E  V PSG LR+   +  G + L   +  +L  YP+
Sbjct: 61  IGRSYYERCKIVLSEAEAADAIALEMKVTPSGTLRVNAPVTFGTSSLAPFITHYLAQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            QI+L L ++ +D   +  +  +R+ + +  S +I   L    + A A+P YL     P 
Sbjct: 121 TQIELTLSDRMVDPVEEGYEVILRIGE-LSDSQMIAYPLQPYRLIACASPGYLAQNGAPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  H+ + +G   P+    + +          P+   L+ N + +++   V G G+
Sbjct: 180 TPAELATHSCLVYGIWSPQAPCRWQFYQEGRMQEIHPQ-GRLRSNDWRALLHAAVSGYGV 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L P+ ++++      LV+++ D   PS  ++   P  L+ T K+++F   +   
Sbjct: 239 TLGPEDVLREEINAGRLVQVLPDYDGPSRPMHILTPAGLRQTVKIRSFIQAVREA 293


>gi|330950566|gb|EGH50826.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 298

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + VF +VA + SFT A ++L +S S I + I  +E  +G++LF+R  R + LT +G
Sbjct: 3   SLGSIAVFVLVAETRSFTQAGKRLGISSSGIGKSIGRMEESLGVRLFHRSTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +LE  ++EL  +   P G+LRI+    L   L+   + +F+  YPDI+
Sbjct: 63  SIFLERCRRILSELEAAEMELINARDLPRGRLRISLP--LVSGLVMPVIIDFMRTYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P   
Sbjct: 121 LDIDFSDRMVDIIEEGFDVVLRTGDP-ADSGLMSKRMGSFQLRIVGAPDYFARHGIPRHP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +          E +           E     +  N+   ++     G GIA 
Sbjct: 180 GDLSQHACLLHKFPSSGKFEHWPLRREPGVDDLE-LPQAMVCNTTEILVDVARAGLGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD+++     +  L+ ++ D    + T    +P +   + +L+ F +F+  
Sbjct: 239 LPDFMISSAVRDGELIPVLADYTVHTGTFRLLWPSSKHLSLRLRVFIDFMHA 290


>gi|319796589|ref|YP_004158229.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315599052|gb|ADU40118.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 306

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 130/289 (44%), Gaps = 6/289 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A  GS + AA +L +S  ++S++++ +E  +G+ L  R  R ++LT +G   
Sbjct: 9   ELGFFSTLAACGSLSAAARELGISTPAVSKRLAQMEARIGVTLLNRTTRRMSLTPEGELY 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   ++     L E+  +P G LR+  T+  G++ +   + +F   +P++++QL
Sbjct: 69  VEHARGILGAIDDMAQLLGEAKAEPRGLLRVNATLGFGRSHVAALISKFARKHPEVEVQL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  IR   P + S +I R++ +      A+P YL     P    +L
Sbjct: 129 QLSVNPPPLTDDAFDVCIRFGAPPE-SRVIARRIASNRRLLCASPAYLARAGHPKVPNDL 187

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I    GD         +                L  N     + + + G GI + 
Sbjct: 188 TRHRCIGIRQGDEAYGVWRLSSGRGAAQHTEAIKTRGALSTNDGEIAVNWALDGHGILMR 247

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ +     +  LV+++ +  TP   +Y  YP+  + + +++AF +FI
Sbjct: 248 AEWDIARYLRSGRLVQVLANYRTPDADIYAVYPQRHQLSARVRAFVDFI 296


>gi|90411752|ref|ZP_01219761.1| hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90327314|gb|EAS43678.1| hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 306

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 129/290 (44%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++ VF  + +  SFT AA+ L +S++ +S+QI  LE  +G++L  R  R   LTE G  
Sbjct: 6   QQMVVFNALTKQQSFTRAAQLLDISRTQVSKQIQQLEERLGVQLVQRTTRSFALTEAGRS 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + V  ++   + EL   +    G LR+        N +   + EF  LYP + ++
Sbjct: 66  FSVHCANVVGEINEAESELLSETDSLQGALRVGIAQSFASNHIAPFISEFHDLYPQLDLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +D+  +  D  I           + R L+  +    A+P YL     P    +
Sbjct: 126 MSLFDYRVDLIAEQLDLWIGFMDS-PPEGFVARHLIDCNFVLAASPAYLAKHGVPYHPND 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN IT+     +  +D  W    +    + ++    +V+S  SI    + G+GI  L
Sbjct: 185 LKDHNCITY---FSRERKDNVWSFRKEEESHQIKVKGNYRVDSADSIRDATLTGNGIGYL 241

Query: 245 PDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y++KD      L+R+M D  +T    +Y  YP       K++ F +FI
Sbjct: 242 ATYLLKDELQKGQLIRLMPDWDLTQYMPLYAVYPRHKYLPQKVQVFIDFI 291


>gi|21232642|ref|NP_638559.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767255|ref|YP_242017.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114447|gb|AAM42483.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572587|gb|AAY47997.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 303

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 136/290 (46%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D LR F  VA  GSFT AAE L L ++S+S  +  LE  +G +L +R  R + LT  G
Sbjct: 3   TMDTLRAFLRVAELGSFTRAAETLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLTADG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++ + ++   ++  Q   Q    +  G+LR+  +  + +  +   L  FL  +P ++
Sbjct: 63  TAFYQRSRDLLDDMDELQGMFQRDHSQLRGRLRVDMSAGIARQFVIPALPAFLAQHPQLE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++   ++ +D+  +  DC +R+   ++ +SL+ R L  + +   A+  YL     P ++
Sbjct: 123 IEISGTDRRVDLVREGFDCVLRVG-TVEDTSLVGRPLGVLRIINVASAQYLAQRGVPQTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H+L+ +   + +    F +     +    P    + VN+  + +     G GI  
Sbjct: 182 EDLAQHDLVHYVSTLGQRSPGFEYHDGA-QYHWLPMRGPVTVNNGDAYLAAARAGLGIIQ 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P   ++   D+  LV ++  +      V   Y +      +++ F ++I
Sbjct: 241 APASPLQAHLDSGVLVEVLAQMAPEPMPVTLLYAQRRHLPQRVRLFMDWI 290


>gi|91213027|ref|YP_543013.1| transcriptional regulator YhjC [Escherichia coli UTI89]
 gi|117625804|ref|YP_859127.1| putative DNA-binding transcriptional regulator YhjC [Escherichia
           coli APEC O1]
 gi|218560596|ref|YP_002393509.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|237703290|ref|ZP_04533771.1| transcriptional regulator YhjC [Escherichia sp. 3_2_53FAA]
 gi|306816127|ref|ZP_07450265.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
 gi|91074601|gb|ABE09482.1| hypothetical transcriptional regulator YhjC [Escherichia coli
           UTI89]
 gi|115514928|gb|ABJ03003.1| putative DNA-binding transcriptional regulator YhjC [Escherichia
           coli APEC O1]
 gi|218367365|emb|CAR05144.1| putative DNA-binding transcriptional regulator [Escherichia coli
           S88]
 gi|226902554|gb|EEH88813.1| transcriptional regulator YhjC [Escherichia sp. 3_2_53FAA]
 gi|305850523|gb|EFM50980.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
 gi|307628600|gb|ADN72904.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UM146]
 gi|315286209|gb|EFU45645.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|323949762|gb|EGB45646.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323954937|gb|EGB50717.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
          Length = 323

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGITYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARSLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|293412952|ref|ZP_06655620.1| LysR family transcriptional regulator YhjC [Escherichia coli B354]
 gi|291468599|gb|EFF11092.1| LysR family transcriptional regulator YhjC [Escherichia coli B354]
          Length = 323

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++GI+L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGIQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR     +   +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGASPED-GVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLIYPQRRELSRRVNLFMQWL 314


>gi|156310355|ref|XP_001617728.1| hypothetical protein NEMVEDRAFT_v1g156874 [Nematostella vectensis]
 gi|156195522|gb|EDO25628.1| predicted protein [Nematostella vectensis]
          Length = 305

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 130/297 (43%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +RVF  VA +GSF+  A +L ++ SS+SR I  LE ++ + LF R  R + LTE+G 
Sbjct: 2   LDAMRVFVHVADTGSFSKTAARLQIAPSSVSRTIDQLEKQLQVTLFKRSTRQVVLTEKGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R    +  +       +Q+     SG+LRI+     G+ ++   +  FL  YPD+ +
Sbjct: 62  LFLRGALPLLEEANALVASVQDRERVVSGELRISVFESFGRLVVSPLIATFLRKYPDVTV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L LDN   D++ D  D AIR+  P+  S L  R+L+       A+P YL     P   +
Sbjct: 122 TLELDNGLTDLTGDNVDLAIRIGLPM-DSGLRYRRLLPNRTRICASPQYLAAQGTPTVPE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +       +    F      D+         L+      +++    G GI  L
Sbjct: 181 ELVQHNCLLLRGDRQRSYWYFR---KHDQMQKITVSGNLRSKGGTPLLEAAKEGLGIVQL 237

Query: 245 PDYIVKD---NPNLVRIMEDVIT-----PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             ++  D      LV ++ED         S  +Y  Y         ++ F +F+  +
Sbjct: 238 LHWMAADALAQGTLVPLLEDWTPSLSEHSSGEIYALYQNTRFPNPLIRVFLDFLMEQ 294


>gi|119775618|ref|YP_928358.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119768118|gb|ABM00689.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 313

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSAAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGH 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    +     +   +    G L++  +   G   +   L EF+  +P++++
Sbjct: 65  LLYVQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMARHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLVASPEYIARHGEPSRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    V G G+  
Sbjct: 184 QLVDHNCLVYH---GEWHEHSVWQFKRGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV ++ D  +T    +   YP       K+ +F +FI
Sbjct: 241 LASYLMEDEINKGTLVPLLRDWQLTHHLPLQAVYPRRKHLAPKVSSFIDFI 291


>gi|288933563|ref|YP_003437622.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288888292|gb|ADC56610.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 303

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 133/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V   GSFT AA +L LS   + + I+ LE+++  +L  R+ R  +LT+
Sbjct: 1   MDKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  ++   +  ++   + P+G LR++     G +++      FL  +P 
Sbjct: 61  AGRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+ +D+  +  D AIR+ + I    L+ R L    M   AAP YL     P 
Sbjct: 121 VRVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H  ++      +       L  ++  +   R + L+ N   ++ Q  + G+G+
Sbjct: 180 TPEDLADHLCLSHTVWTARNEWR---LPGIEGEVRWKRDAILRCNDGYALRQAAIAGAGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + P+ ++ D   N +LVR++E        V+  + +  +   KL  F   +
Sbjct: 237 LMQPEVLLADALANGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQFIAHL 288


>gi|187924115|ref|YP_001895757.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715309|gb|ACD16533.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 298

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 130/295 (44%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F   A SGSF  AA    +S     + +S LE  VG +L  R  R  +LTE
Sbjct: 1   MDRLTSMAIFVKTADSGSFAAAALAFGISSQMAGKHVSTLEERVGARLLNRTTRRQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +       +   QE S  P G+LRI   +  G   L   +  +L  +P+
Sbjct: 61  IGQIFYERCKALLADAAAAESVAQELSASPRGRLRITAPVTFGACCLAPLIARYLKAHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L ++ +D+  +  + AIRL   +  SSLI R L+   + A A+P YL    EP 
Sbjct: 121 VRVELTLTDRFVDLIDEGYEAAIRLGA-LSDSSLIARPLMPYRLVACASPGYLAERGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +EL  H  ++F          +   A        P     + N   +++   + G G+
Sbjct: 180 TPRELTAHECLSFAYTSMPADTAWR-FADAQGEQAVPIAGRFEANDVKALLAAALNGGGV 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L P+  VKD      LVR++      +  ++  +P +   T KL+AF + +  +
Sbjct: 239 MLAPEVAVKDELAAGRLVRLLTGYEATARPMHLVFPASR-VTPKLRAFIDQVVAE 292


>gi|226942562|ref|YP_002797635.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226717489|gb|ACO76660.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 323

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 142/304 (46%), Gaps = 17/304 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+F  VA +GSFT AA +L L+ S +SR ++ LE+ +  +L +R  R + LT
Sbjct: 1   MDI-LSHMRIFACVAETGSFTAAATRLDLTTSYVSRAVASLESHLRTRLLHRTTRRIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +   ++   +E  + E  ++  +P+G L++     +G + L   + E+   YP
Sbjct: 60  EAGQRYLQRCEQILGYIEEAEAEASQAHARPAGNLKVHAVTGIGNHYLIKAVAEYSEQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++   L L N+  DI  +  D ++     +  S  I +KL  I+    A+P Y+     P
Sbjct: 120 EVSFDLTLANRTTDILEEGYDISVVTAPELADSGFISKKLGNIYSVLCASPLYIARHGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCV 236
            +  EL  H  +    L+   M    WL  ++ P GE  ++      QVN+  ++     
Sbjct: 180 RTPAELAAHRCL---RLVYPVMSLDKWL--LEGPDGEELVTVSQTHFQVNTVDAMTVALK 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+  LP Y   +   + +LVR++ +    S  VY  YP       K + + +F+   
Sbjct: 235 AGMGVGALPVYSALESLQSGSLVRVLPEYTLYSLGVYALYPSRQYLDAKTRTWVDFL--- 291

Query: 294 ARDW 297
            RD+
Sbjct: 292 -RDY 294


>gi|150395293|ref|YP_001325760.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150026808|gb|ABR58925.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 302

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G+FT A+  L++ +++++  I GLE  +  KL  R  R + +T 
Sbjct: 1   MDQLTAMRAFLRVVETGNFTRASVSLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   + +   L+     L  +   P G+LR+ T       ++   L EF   YPD
Sbjct: 61  DGALYYERAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHNKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ ID   +  DCAIR    +   SLI R++  +   A A+  +L+    P 
Sbjct: 121 IQIDLGVSDRTIDYLAENVDCAIRAG-TLTDQSLIARRITEMQFVACASRDFLERHPVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
              +L+K N    G  +PK  +   +         E      +  N   S +     G G
Sbjct: 180 HPSDLEK-NCYVVGYFLPKTGQQMPFHFRRGNEEIEVSGRYTVAANESTSYIAAARAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +   P ++V+++     ++ ++ D       VY  YP     + +L+ F +++ 
Sbjct: 239 VIQAPLFMVREDLRNGTMLPVLPDWQVDPMPVYLVYPPNRHLSSRLRVFADWVV 292


>gi|190895100|ref|YP_001985393.1| putative LysR family transcriptional regulator [Rhizobium etli CIAT
           652]
 gi|190700761|gb|ACE94843.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 324

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 4/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA    L +S +SR+++GLE  +G++L  R  R L +TE G
Sbjct: 6   DLNDLMLFAAVVHHGSFSAAALAHGLPKSKVSRRVAGLERRLGVRLLQRSTRALHVTEVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    +        +   PSG+L+++  I +    L   L +FL  +P ++
Sbjct: 66  QALLPHCESMAESAQAALEVAASAGEHPSGRLKVSCPIGVAHIYLAPVLGKFLKAHPAVR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +L L N+ +D+  +  D A+R+R  +  S+L+ R L T      A+P ++       S 
Sbjct: 126 FELDLTNRRVDVIAEGYDVALRIRSSLDDSNLVVRSLGTSEQMLVASPEFIATHGPFGSA 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +   +     +      ++ L      I    +  L  +    + Q  + G G+A 
Sbjct: 186 DSLQRKPGVG-PAGVRGERNFWSLLKPDGVSIDIEYLPTLMTDDVYVLCQAALAGIGVAR 244

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP  I  D   +  LV+++      +  V+  +P        ++AF +F+  + 
Sbjct: 245 LPVNICGDAIRDGRLVKVLPHYRLHAHGVHAVFPSRRGLVPAVRAFLDFLAEEL 298


>gi|167579946|ref|ZP_02372820.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167618023|ref|ZP_02386654.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 324

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 137/298 (45%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  + SFT AAE L + ++S++  I  LE  +G +L +R  R L+LT 
Sbjct: 1   MDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGARLMHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++  ++  T    Q    KPSG LR+     LG+ L+   L  F   YPD
Sbjct: 61  EGAAYYEHCIKIITEIAETDASFQVGKRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D   +  DC IR+  P++ SS++ R++  +     A+P YLK   EP+
Sbjct: 121 VVLDLGLSDRPVDPVEEGIDCMIRIG-PLEDSSMVARRIGMLKRVTCASPDYLKRFGEPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I EL  H+ + F            W+  +D    E R+   + VN   + +   V G G
Sbjct: 180 EIAELAAHHAVNF--RASHGSRPVPWVFVIDGKPVEVRMEGGVTVNDSDAYVTCGVEGFG 237

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +       +LP  +   +  L  ++  +      +   YP     + K++ F ++I  
Sbjct: 238 MIQPTLFMVLPHLL---DGTLKEVLPGLNPKPKPISIVYPNNRHLSAKVRVFADWIAE 292


>gi|144900257|emb|CAM77121.1| regulatory protein, LysR:LysR, substrate-binding [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 329

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 142/301 (47%), Gaps = 12/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LRVF  VA SGSF+ AAE L+L ++S++  +  +ET VG +L  R  R + LT 
Sbjct: 29  MDHLAALRVFIRVAESGSFSRAAEALNLPRASVTTAVQAVETRVGTRLLSRTTRRVALTP 88

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +   ++      ++ + +  G+L+++    L  + L   L  FL  YP 
Sbjct: 89  DGTAYLERCRRLLDDVDDMDALFRQGADQIKGRLKVSLPERLANHTLIPALPAFLARYPG 148

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L + ++ +D+  +  DC IR  + ++ S LI R+L  +   ++A+P YL     P+
Sbjct: 149 VQVELAVTDRFVDLVGEGVDCVIRAGE-LRDSRLIGRRLGAMVQGSFASPAYLSAHGTPI 207

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L  H LI +   +     DF+W      RP      + L V++  + +   + G G
Sbjct: 208 EPADLPGHRLIGY---VGPQGADFSWEYMEAGRPRQIVVPARLAVDNAEAQVAAAMAGLG 264

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKA 294
           +  +P Y ++    +  LV ++     P   +   YP     + K+ AF ++   +   A
Sbjct: 265 LIQVPVYGIRPQVTDGRLVEVLAGYRPPPLPMTVLYPHRRHRSPKVTAFIDWVESVLAAA 324

Query: 295 R 295
           R
Sbjct: 325 R 325


>gi|134292495|ref|YP_001116231.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135652|gb|ABO56766.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 307

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 142/290 (48%), Gaps = 9/290 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF +V R  SF+ AAEQL +S + +S++I+ LE ++G +L +R  R +T+T+ G
Sbjct: 6   NLDDLRVFSLVVRLTSFSAAAEQLAVSPAYVSKRIALLEAQLGTRLLHRSTRRVTVTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + 
Sbjct: 66  ERVFARAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D+  +  D  +R+   I    LI R+L   +    A+P YL     P ++
Sbjct: 126 VRLDLFDRLVDVVGEGYDVDVRIGDEIAD-HLIARRLAANYRVLCASPEYLARRGTPRTL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+ +   +   +      W   V       ++   L  N     +Q+ + G GI 
Sbjct: 185 ADLASHDCLAIKE---RDHPLGVWRLNVRGETATVKVGGALSTNHGEVAVQWALAGRGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L   +      +   L R++ D I P+  ++  YPE +  + K++   +F
Sbjct: 242 LRSIWEAGPLIERGELRRVLPDAIQPA-NIWAVYPERVAASAKVRVCVDF 290


>gi|260555397|ref|ZP_05827618.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411939|gb|EEX05236.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 301

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 1   MS-FDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           MS FD +   +L +F  V   GSF+  A   +++ S++S+ IS LE  +G++L  R  R 
Sbjct: 1   MSYFDINRSGELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQ 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
             LT +G + + +  ++ + L+  +  +  +   P G++RI T+     + L   +  F 
Sbjct: 61  FQLTNEGCQFYELGIQILNDLDELEQAVTANH-IPKGRIRIHTSFSYWTHFLLPCISLFN 119

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP+I+++  L ++ I++     D AIR   P++SS+L+ R L + +     +P Y++ 
Sbjct: 120 QRYPEIELEAHLSDEVINLVEQRIDVAIRTG-PLKSSNLVARSLGSTYKQYVCSPVYIEK 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYC 235
              P    EL +H L+     +    ++  WL     + I       L+VN   +I+Q  
Sbjct: 179 YGRPEHPDELHEHQLL----DVSYQRQNKTWLFKKATQEISLTPSKVLKVNHGEAILQLA 234

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYP-EALKNTGKLKAFRNFI 290
           + G+GIA L ++ ++       LV+I+ED  I  S   +  +         +++ F +F+
Sbjct: 235 LAGAGIAQLNEFQIRNALQQKQLVKILEDWNIHASEEFHAVWIGHDKYVPNRVRTFLDFL 294

Query: 291 FLKA 294
              A
Sbjct: 295 VEHA 298


>gi|221070133|ref|ZP_03546238.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220715156|gb|EED70524.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 309

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 130/298 (43%), Gaps = 9/298 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS D   ++  F  VA  GS T AAE+L +S ++ SR +  LE  +G +L  R  R L L
Sbjct: 1   MSSDRLAQIEFFVQVAELGSLTKAAEKLEMSNAAASRTLLALEERLGARLVERTTRRLWL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G   +R  S +  ++   + E+ E++++P+G L + +++      +   L EF   Y
Sbjct: 61  TEVGQTFYRRCSAMLSEIAEAEAEVNEATLQPTGTLHVTSSVSFAMLHIAPALPEFQRRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + +Q+   N+  D      D AIR R+    S++  RKL        A+P YL     
Sbjct: 121 PQLNVQITAANRYFDFIEAGIDVAIRTREYESDSNITVRKLARTWRVMAASPGYLAANGV 180

Query: 180 PLSIQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P    +L  H ++ +     P  +         D  I     S    N    I+   + G
Sbjct: 181 PKHPDDLKSHRMLIYNLAKDPTVLHLSQGQDHRDVEIS----SAFDSNEGQVIVSAGLAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI + P YI+ D      LV ++ D   P  T+   Y        K++ F +++  +
Sbjct: 237 LGIVIQPLYIIHDEIVAGRLVPVLLDWALPPLTINIAYQSRRHLPAKIRVFTDYLVER 294


>gi|42524310|ref|NP_969690.1| LysR family transcriptional regulator [Bdellovibrio bacteriovorus
           HD100]
 gi|39576519|emb|CAE80683.1| transcriptional regulator, LysR family [Bdellovibrio bacteriovorus
           HD100]
          Length = 296

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 136/301 (45%), Gaps = 9/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA++GSFT AA+ L++S+  ++R +  LE  VG  L  R  R ++LT 
Sbjct: 1   MDRLTAIQVFLEVAKTGSFTKAADNLNMSRPMVTRYVGILEDWVGTSLLQRTTRNVSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++       ++  + +  +P G +R+A+++    +  +  +  F+  YP 
Sbjct: 61  SGEMYLEKCRQIQDIAFDIEVNSKSALDEPKGVIRVASSVSFAMSQYRELIAPFMERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I  ++ ++ +++     D AIR+   +    ++ ++L   H    A P YLK    P 
Sbjct: 121 ISIDFVVTDRQVNLIESKVDFAIRITNSL-DPGIVSKQLGVCHSCLVATPKYLKAKGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L KH L+         +     L   DR       S    N  L +++      GI
Sbjct: 180 KVEDLRKHRLMAHDHFKNSKLS----LRKGDRQEELSFTSAFSSNETLLLLEAATQDLGI 235

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            ++P Y+V+D+     LV ++ D   P F ++  +        +++ F +++  + +   
Sbjct: 236 TMMPRYLVQDHLKSKRLVEVLSDWSLPEFGLHIVFTNRKFIAPQVRLFIDYLSAEIKKQN 295

Query: 299 F 299
           +
Sbjct: 296 W 296


>gi|311109043|ref|YP_003981896.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763732|gb|ADP19181.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           194 [Achromobacter xylosoxidans A8]
          Length = 355

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 143/292 (48%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++VF  V  + SFT AA+ L L +++++  I  LE  +G++L  R  R + LT 
Sbjct: 1   MDRFQAMQVFVRVVDANSFTRAADSLSLPRTTVTTIIQNLERLLGVRLLNRTTRRIGLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++    +   +E T+   QE++++  G+LRI     +G+ +L  +L +F   YPD
Sbjct: 61  DGAGYYQHCVRILADVEETEACFQEAALRLKGRLRIDVPTCIGRLILIPSLCDFHDKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  DC IR    ++ SSL+ R++ T+     A+P Y+     P 
Sbjct: 121 VELVLGLGDRPVDMVQEAVDCVIRAGD-LEDSSLVARRIGTLQTVTCASPTYVARHGLPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +I EL  H+ + +     +   +  W   VD    E  +   + VN   + +   + G G
Sbjct: 180 TIDELRDHHAVHY--FSSRTGRNCAWDFRVDGKHQEVEMKGVVSVNEAGAYLDCGLKGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +     Y+   +     L+ ++         +   YP++ + + K++AF ++
Sbjct: 238 LIQTARYMALPHLQTGELIEVLPQWKPSPTAISVLYPQSRQLSPKVRAFADW 289


>gi|167623093|ref|YP_001673387.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167353115|gb|ABZ75728.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 313

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 138/291 (47%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    E     +   +    G L++  +   G   +   L EF+  +P++++
Sbjct: 65  LLYTQGEELLRDAEQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMAKHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y++   EP   +
Sbjct: 125 QVSLLDHKVDVVNEGLDLLLTMSEQLP-LGMVARPLMKCQFLLAASPSYVEKHGEPSRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    V G G+  
Sbjct: 184 QLVDHNCLVY---QGEWHEHSIWQFKQGDDFCEIGVSGNFRVDNAPALKSAAVSGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV IM+D  +T    +   YP       K+ AF +FI
Sbjct: 241 LASYLLEDELEKGTLVPIMQDWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|33601728|ref|NP_889288.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33576165|emb|CAE33244.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 308

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 133/295 (45%), Gaps = 6/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F    ++GSFT AA  L +++S++ + ++ LE  +G++L +R  R L +T +G 
Sbjct: 6   FGDILAFVSAVKAGSFTSAAATLGVTRSAVGKSVARLEARLGVRLLHRTTRKLNVTGEGL 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +    S++   LE     + +   KP+G LR+   +  GQ  +   L  ++  +P+IQ 
Sbjct: 66  VVFERWSQILEDLEEVDATMAQRRGKPAGILRLTAPLSFGQRHILPILNAYVTNWPEIQA 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +  +D+  +  D A+R+      + ++ R +        AAP YL     P +  
Sbjct: 126 DVWFTDHYVDLIEEGIDVAVRIGGVKDDARILSRTIGGQQFVTCAAPGYLAKKGVPSTPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ I F                ++   G  R   + ++S  ++ +  + G G+  L
Sbjct: 186 DLAGHDTIFFLSGQRPMPWRLGQGDAIEVCDGPGR---MNIDSSEALREAALSGFGLIHL 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P YI   +    +LV ++E    P+  +   YP     + + +AF + +  + RD
Sbjct: 243 PTYITGKDLQRGDLVEVLEAYRPPADPIRLIYPSKRHLSPRTRAFIDLLIERWRD 297


>gi|295680770|ref|YP_003609344.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440665|gb|ADG19833.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 325

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 88/298 (29%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD   +  + V   VA SGSF  AAE L +S S +SR IS LE ++G++L  R  R  
Sbjct: 1   MTFDGRLFAGITVLAAVAESGSFVRAAEALGVSPSGVSRAISRLEKQIGVRLLDRTTRSQ 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G +L+   S     +E        S+    GKLR+       + +L   L   L 
Sbjct: 61  TLTDEGRRLYETVSPHLVGIECAASTASGSAGVVQGKLRVNVDPFFSRTVLASKLPALLQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P++ ++LI+ +   D+  D  D AIR   P    +L+ RKL+   +   A+P YL++ 
Sbjct: 121 QFPELSVELIMRDDVGDLVADGFDLAIRFGPP-PVGTLVARKLLEARIITVASPAYLESN 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCV 236
             P    ++  H  I F    P     F W     +  +G P    L V+   +++  CV
Sbjct: 180 GRPNCPDDVVDHERILF--YNPLSGRPFEWEFHRGKEVVGIPVYGRLLVSDVGTMLNACV 237

Query: 237 LGSGIALLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G+GIA +        I + +  LV +  D     F +Y  YP       K++AF +F
Sbjct: 238 AGAGIAQVMSIGTETLIAQQD--LVDLFPDWPDERFPLYALYPSRRHLAAKVQAFISF 293


>gi|227326291|ref|ZP_03830315.1| putative transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 295

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 7/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  VA    F+  + +L +S SS+ + ++ LET +G++LF+R  R L LT +G K    
Sbjct: 10  IFVRVAERLGFSAVSRELGVSPSSVGKAVARLETRLGVRLFHRSTRTLALTAEGEKFLER 69

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++E  ++E+ ++S  P GKLR++       +L +  + +F+  YP +++ L   
Sbjct: 70  CRRILSEVEAAELEMTQASEMPHGKLRVSLPR--HSSLFEPVIADFMRRYPAVELDLDFS 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIR    +  S L +R+L T       AP Y K   +P    +L  H
Sbjct: 128 DRLVDVIGEGFDAAIRTG-TLADSGLKRRQLGTFRRVLVGAPEYFKEHGQPQHPMDLQAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +      +    +  +S L  NS    +       GIA LPD+ V
Sbjct: 187 ICLHYRFPSSGRLEQWPLPLAAEENTYDLPLS-LVCNSIEMRIHLARQAQGIACLPDFSV 245

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +  L  I++D    S  ++  +P +   + KL+AF + +  K
Sbjct: 246 AKYLRDGRLQTILDDFTQNSSPMWILWPASRDLSPKLRAFIDCLSEK 292


>gi|206580258|ref|YP_002236581.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569316|gb|ACI11092.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 303

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 133/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V   GSFT AA +L LS   + + I+ LE+++  +L  R+ R  +LT+
Sbjct: 1   MDKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  ++   +  ++   + P+G LR++     G +++      FL  +P 
Sbjct: 61  AGRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+ +D+  +  D AIR+ + I    L+ R L    M   AAP YL     P 
Sbjct: 121 VRVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H  ++      +       L  ++  +   R + L+ N   ++ Q  + G+G+
Sbjct: 180 TPEDLADHLCLSHTVWTARNEWR---LPGIEGEVRWKRDAILRCNDGYALRQAAIAGAGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + P+ ++ D   + +LVR++E        V+  + +  +   KL  F   +
Sbjct: 237 LMQPEVLLADALASGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQFIAHL 288


>gi|332975063|gb|EGK11969.1| LysR family transcriptional regulator [Kingella kingae ATCC 23330]
          Length = 293

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 136/293 (46%), Gaps = 12/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V +SGSFT AA+ L +S    S+ ++ LE  VG +L YR+ R L LTEQG +  
Sbjct: 7   MKVFCQVVQSGSFTRAADLLDISIPMASKHVAHLEKNVGAQLLYRNNRSLKLTEQGERYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S     L       Q  + KP G LRI+  +    +     L E+  LYPD+++ L 
Sbjct: 67  QDCSTALELLAQAAESAQAGTSKPQGLLRISAPVWFACDHFAHLLHEYQTLYPDVELMLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D++ D  D A+RL   +   ++I + L  I  +  A+P Y+    +P    EL 
Sbjct: 127 LTNQRVDLNSDGEDLALRLTHTLAD-NIIAKPLGKIPFYLAASPSYIAQHGQPTHPDELS 185

Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H  +  ++ DL     E         + I       ++ N    +      G+GI  +P
Sbjct: 186 QHQAVLQSYVDLSQLSGEY------KGQRINLQLNGKIRSNHTQMLASLIRAGAGIGYIP 239

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++  D+     L+R++ D       +Y  Y        K+++F +F+  K +
Sbjct: 240 AWLADDDLRAGRLIRLLPDCQMQDPPLYAVYANRQFMKAKVRSFIDFMAQKCQ 292


>gi|24374874|ref|NP_718917.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24349572|gb|AAN56361.1|AE015773_6 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 312

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGH 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++
Sbjct: 65  LLYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMAKHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLVASPDYIAKHGEPSRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  
Sbjct: 184 QLVDHNCLVY---QGEWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV +++D  +T    +   YP       K+ AF  FI
Sbjct: 241 LASYLMEDEIAKGTLVPLLKDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFI 291


>gi|325277045|ref|ZP_08142705.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097828|gb|EGB96014.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 273

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 11/281 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W+ +  F  VA SG FT AAE+L +S S ISRQI+ LE  +  +L YR  R +TL+
Sbjct: 1   MSNRWEGIDEFVAVAESGQFTAAAERLGVSSSHISRQIARLEERLQTRLLYRSTRRVTLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    +    E     + + + +P G LR+   +  G+  +   +  F+ LYP
Sbjct: 61  EAGQTFLQHCQRLQDGREEALRAMGDLASEPKGLLRMTCAVAYGERFIVPLVTRFMALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + L+N  +D+  +  D AIRL + +  S L+  +L    M+  A+P YL+    P
Sbjct: 121 QLRVDVELNNHTLDLLHEGMDLAIRLGR-LADSRLVATRLAPRRMYLCASPAYLERYGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL +HN +           D   L    R I +      + NS  +++   + G G
Sbjct: 180 HSLSELARHNCLI-------GSSDAWALQQDGREISQRVQGNWRCNSGQAVLDAALQGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALK 278
           +  LPDY V ++     LV ++E    P+  V+  YP+   
Sbjct: 233 LCQLPDYYVLEHLHSGALVSLLEGHQPPNTAVWALYPQQRH 273


>gi|323530261|ref|YP_004232413.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323387263|gb|ADX59353.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 320

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 134/304 (44%), Gaps = 13/304 (4%)

Query: 1   MSFDWDKL-----RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L      +F   A  GSFT AA    ++ +++SR ++ LE  +G +LF R  R
Sbjct: 1   MQRKFDDLLLGSIELFCFAAELGSFTLAANAASVTPAAVSRSVARLEERLGARLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G +      E   +L   + E+      P+G +RI+     G   +   L  F
Sbjct: 61  QIRLTDAGRRYFEQCREALSQLADAEREVTGEQTTPAGVVRISMPTPYGHYRVLPLLPAF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP + ++  L N++ID + +  D AIR R P   SSL+ RKL    M   AAP YLK
Sbjct: 121 RERYPHVYVETHLSNRNIDFADEGFDLAIRGRAP-ADSSLVARKLEDAEMVVVAAPGYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI--MQ 233
               P ++ +L  H  I F   +P       W        G+   S     S  ++  + 
Sbjct: 180 RAGVPETVADLQTHECIQFD--LPSSGRRLAWTLQDPLDDGDVLTSGSYATSGDALAGVT 237

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     ++V+D+     LV ++ +    +      YP A   T +++AF +F+
Sbjct: 238 LARAGAGLFQTYRFVVQDDLREGRLVEVLREAGGRTRPFILLYPHARYLTSRVRAFVDFL 297

Query: 291 FLKA 294
             + 
Sbjct: 298 VEQL 301


>gi|261492035|ref|ZP_05988610.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261495012|ref|ZP_05991480.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261309328|gb|EEY10563.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261312318|gb|EEY13446.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 296

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 59/302 (19%), Positives = 136/302 (45%), Gaps = 14/302 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q  +S    S+ ++ LE  + ++L  R  R +T TE
Sbjct: 1   MDKLNAISLFCKVIETQSFTQAAQQAQISLPMASKLVAQLEEHLNVRLLQRTTRKITPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+     +   +    GK+ ++  +D G   +   L +F+  YP+
Sbjct: 61  AGLLYYQQCLPILNELKEADASVSNINSTLQGKITMSVPMDFGSRFIAPYLGKFMEDYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + +   ++ +D+  +  D  +R+   +  SS++ +K+   H+   A+P YL    EP 
Sbjct: 121 LALHIEFSDRRVDVIAEGFDLVLRIGS-LADSSIVAKKIADSHLVLVASPDYLARFGEPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++ L +   + + +  P+        +   + +       +  N+  +++Q    G GI
Sbjct: 180 GLEALVERGCLLY-EYHPQWQ-----FSQQGQKMQIKPQGKIYSNNGYALVQMAKAGLGI 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKAR 295
             +P +++K    N  L+ IM  +      +   YP     + K++   +F   +  + +
Sbjct: 234 INIPKFLIKHELKNGELIPIMPFLTQEPLQISLLYPNRRYLSPKVRILIDFFTQLMQEQK 293

Query: 296 DW 297
           ++
Sbjct: 294 EY 295


>gi|3169721|gb|AAC17939.1| GstR [Bradyrhizobium japonicum]
          Length = 342

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 141/299 (47%), Gaps = 7/299 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D    +  F     SGS + AA  L  S +++SRQIS LE   G +L  R  R L L
Sbjct: 40  MAMDQLAAMATFVRAVDSGSLSAAARSLPSSLTAVSRQISALEQHFGTRLLVRTTRQLAL 99

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G  L+     +  +++  +  L  S  +PSG+LR++    +G+ L+   L +FL   
Sbjct: 100 TDDGRMLYERAKSILGEVKEIEEALAGSRREPSGRLRVSAPTLMGRLLIAPLLGDFLHAC 159

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L+L ++++++  +    A+R+ + I  S L+ RKL  + M   A+P YL    E
Sbjct: 160 PSLSVDLLLVDRNVNLIEEDVHLALRVGR-IPDSQLVTRKLAEVQMIHCASPGYLARRGE 218

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S  +L +H+ + F D        F   A     I       L VNS  ++      G+
Sbjct: 219 PQSPSDLPRHDCLVFSDAPGAATWRFGRDAKGGSRIRI--AGRLWVNSLDALASAAENGA 276

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI  +P + V+       L R++ +       ++  Y  +   + K++AF +F+  + R
Sbjct: 277 GIVRVPSWQVERQLAEGRLRRLLREHEPAPAPLHALYQPSRLGSAKIRAFIDFLVERWR 335


>gi|26250154|ref|NP_756194.1| putative transcriptional regulator YhjC [Escherichia coli CFT073]
 gi|227883681|ref|ZP_04001486.1| transcriptional regulator YhjC [Escherichia coli 83972]
 gi|300971328|ref|ZP_07171409.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|301046588|ref|ZP_07193729.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|26110583|gb|AAN82768.1|AE016768_186 Hypothetical transcriptional regulator yhjC [Escherichia coli
           CFT073]
 gi|227839261|gb|EEJ49727.1| transcriptional regulator YhjC [Escherichia coli 83972]
 gi|300301452|gb|EFJ57837.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300411313|gb|EFJ94851.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|307555624|gb|ADN48399.1| hypothetical transcriptional regulator YhjC [Escherichia coli ABU
           83972]
 gi|315295419|gb|EFU54749.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
          Length = 323

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARSLGKLAMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 314


>gi|330965341|gb|EGH65601.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 305

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AA+ LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAADSLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYLRCVSLLADLDDAEAAFSSTGAEPKGLLRVDLPVSLGRMVVIPALPEFTRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 VRLEIGMSDRPVDLIREGVDCVLRAGAAL-DEALVARPLGSLTQVTCASREYLQQHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L  H +I +            ++     P      S + VNS    +  C  G G+
Sbjct: 180 QLEDLAHHQVIEYFSASTSKRYGLEFVGEGGAPDHGLACS-ISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y +     +  LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHIAGQLRSGTLVEVLRRHRPPPLALKALYPPHRQLSRRVRVFVDWLVE 292


>gi|224825559|ref|ZP_03698664.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602480|gb|EEG08658.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 300

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 130/292 (44%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA  GS +HAA+ L +S++ +SR ++ LE   G +L +R  R L+LT 
Sbjct: 1   MDRLKAMRVFVEVAERGSLSHAADSLDMSRAMVSRYLAELEEWAGARLLHRTTRKLSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS++     ++    +  Q  +      P G LR+  ++ LGQ+ L   + +++  YP 
Sbjct: 61  AGSEMLPRCRQMLALEDEMQAAVTTPEAAPRGILRLTCSVWLGQSYLARAVADYVKRYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             + + L N+ +++  +  D AIR+   +   +LI RKL        A+P YL+    P 
Sbjct: 121 TAVDMQLLNRSVNLVEEGIDLAIRITNDL-DPNLIARKLGLCRSVVCASPAYLREHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  HN +T+              +   +P+  P    +  N   ++++    G GI
Sbjct: 180 RAEQLALHNCLTYSYFGKSLWA----FSRDGQPVSVPVGGNVSANETAALLEAARQGVGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + P        D   LV +++D       +Y  Y         L+   +F+
Sbjct: 236 TMQPLQAAAPWLDTGELVAVLDDYRPRDLGIYAVYASRRHMPATLRTMLDFL 287


>gi|323525875|ref|YP_004228028.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382877|gb|ADX54968.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 306

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 14/301 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD    + + V   +   GSF  A   L +SQS +SR ++ LE  +GI+LF R  R +
Sbjct: 1   MPFDERMLNGMGVLTAIVDCGSFAAAGVALDMSQSGVSRSVARLEARLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +     +   LE       + +    G+LR+       + +L   L  F+ 
Sbjct: 61  TLTDEGRRFYEQIVPLLSGLEEAAASAAQGATAVRGRLRVNLDPFFSRLVLGPRLGGFVD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+Q++LI  ++  D+  D  D AIR  +P   SSLI RKL+   +   AAP YLK  
Sbjct: 121 RHPDLQLELITRDQLGDMVSDGFDVAIRFGEP-PVSSLIARKLLDTRVLTVAAPAYLKKH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQY 234
             P +  EL+  +H  I F D  P     F+W     R  +       L VN   ++   
Sbjct: 180 GHPANPAELESGQHACIKFRD--PLTGYPFSWEFHRGRKKMVITPQGRLTVNDVGTLHSV 237

Query: 235 CVLGSGI----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           C  G G+    AL  + ++  +  +V +  D     + +Y  YP       K++AF +FI
Sbjct: 238 CTAGQGVAQTLALGAESLLG-SGKMVELFPDWGDEVYPLYALYPSRHHPPAKVRAFLDFI 296

Query: 291 F 291
            
Sbjct: 297 V 297


>gi|118590643|ref|ZP_01548044.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118436619|gb|EAV43259.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 314

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 13/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS +   + +F  V  +GS + A  ++ LS + +S++I  LE ++G +L  R  R + +T
Sbjct: 1   MS-NLTDMEIFARVVSAGSMSAAGREMSLSPAVVSKRIRRLEEKLGTRLLQRTTRQIAMT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +   +E  +  +   S K  G L++A     G+  +  +L  FL    
Sbjct: 60  EAGQGFYERVVAILASVEEAESFVSRGSAKARGNLKVAVPTSFGRLHIAPHLGTFLAENT 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L L +  +DI  D  D AIR+ + +  SSL+ R+L  +H    A+P YL     P
Sbjct: 120 DLSVNLDLSDDFVDIVGDGYDLAIRIAE-LSDSSLVARRLAPVHRVLCASPAYLDKYGIP 178

Query: 181 LSIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            SI++L   H  I   +  P  +   N + TV         + ++ NS   + +  + G 
Sbjct: 179 ESIEDLVANHVTIAATNQDPWRLAGPNGIETVRTQ------APIKTNSNEVVRECLLAGV 232

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           G+AL   + V        L  ++ +        +Y  YP       K++ F +F+
Sbjct: 233 GVALRSTWDVGPELREGKLQILLPEYRASKDVGLYAVYPSRQFLPAKVRVFIDFL 287


>gi|58038992|ref|YP_190956.1| LysR family transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58001406|gb|AAW60300.1| Transcriptional regulator LysR family [Gluconobacter oxydans 621H]
          Length = 323

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 129/297 (43%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +  +  F  V  +GS T A E+  +S + +   +  LE  +G  L  R  R  +LT
Sbjct: 1   MNV-FQAMTTFMAVVETGSMTAAGERCGISPTMVGNYVRLLEERLGTSLLRRTTRRQSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+        +   L+ T+   Q +   PSG LR+   +  G   +   L  +L   P
Sbjct: 60  AFGAVYFEKCQSILKLLDETEHLAQAAQTLPSGTLRVTAPVTYGTQSVTPCLARYLAENP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+L  + +D++ +  D AIRL  P + SSL+ R+L    M   A+P YL    E 
Sbjct: 120 SVDVDLVLTERSVDLTHEKFDIAIRLGVP-EPSSLMCRRLTDYRMTLCASPEYLDRREEL 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVL 237
           L  Q+L  H+ + F                 + P G   +   +    NS  ++ +  + 
Sbjct: 179 LVPQQLATHDALAFAYTSSSPWHWARHEWHFESPKGRVTVEMRRRGLFNSTQAMRRAALG 238

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G GIA+LP  +V+D+     L  ++ D   PS  +Y  Y +   +   L +F  FI 
Sbjct: 239 GLGIAMLPTDLVQDDLKAGTLQALLPDYTLPSRPIYLLYHKERYSAPTLHSFIRFIM 295


>gi|307729428|ref|YP_003906652.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583963|gb|ADN57361.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 314

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 129/299 (43%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF  V  +GS T AA    LS + +   +  LET +G +L +R  R   L+
Sbjct: 1   MDL-LKAMTVFVRVVETGSLTAAAVACDLSPTMVGNHLQALETRLGTRLIHRTTRKQQLS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +    ++   ++ ++    +    P G+LR+   +      L   + ++   YP
Sbjct: 60  AFGRTYYERCVDILGLIDESERLALDHLATPRGRLRVTAPVVFSNECLIPAIGDYCERYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ ++  +   D+  D  + AIR+   + +  L+ R+L    +   A+  YLK    P
Sbjct: 120 EVKLDIVATDALSDLVDDGFEAAIRIGA-LGNPDLVARQLTPYRLVLCASRAYLKAHGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN--W-LATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            + + L  H  +T+              W L   D  +  P    L++++  ++ +  + 
Sbjct: 179 STPKALSTHQCLTYAYPPRSEWHTAQPEWVLHGPDGRVSVPVNGRLKIDNAEALRRAALR 238

Query: 238 GSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GIA+LP  +V D+     L  ++   + P   +   Y    + + KL++F +F+  +
Sbjct: 239 GLGIAMLPAILVDDDLRAQRLTEVLPGYVAPERQLSLLYLRERQLSSKLRSFIDFVVDR 297


>gi|154245815|ref|YP_001416773.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159900|gb|ABS67116.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 310

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 128/296 (43%), Gaps = 11/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   L +F  +  +GS + A  ++ LS   +S+++  LE  +G +LF R  R +TLT
Sbjct: 1   MIGNLGDLEIFARIVTAGSLSAAGREMGLSPPVVSKRVQRLEERLGARLFQRTTRKVTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +   +E  + +L   S +  G LR++     G+  +  +L+  L   P
Sbjct: 61  EAGQGFYDRVVAILASIEEAESQLARKSSEARGLLRVSAPTSFGRLHIAPHLRPLLDANP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L L +  +DI  +  D A+R+   +  SSL+ R+L ++H    A P YL    EP
Sbjct: 121 GLTIDLELSDSFVDIVGEGFDVAVRIAD-LDDSSLVARRLASVHRVLCATPDYLARVGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I +L  H L+      P  +E        D P+     S L+ NS   + +  +   G
Sbjct: 180 GHISDLSGHVLLATHGQDPWRLE------GPDGPVTLRVHSQLRTNSNEVVREAVLASVG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
           IAL   + V     +  L  ++          ++  YP       K++ F + +  
Sbjct: 234 IALRSTWDVGPELRSGALKVVLPRWRASHRVGLFAVYPSRRFLPQKVRVFIDHLAA 289


>gi|270265357|ref|ZP_06193618.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270040761|gb|EFA13864.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 299

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 136/293 (46%), Gaps = 8/293 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D  D +R+F  V    SFT AA+ ++L +S+++  I  LE  + ++L  R  R ++ 
Sbjct: 1   MTMDRIDAMRLFTRVVEQRSFTQAAQDMNLPRSTVTDAIKQLEARLQVRLLQRTTRHVSP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G   ++    +   +E  ++    +  KP G LRI     L ++ L   L +FL  Y
Sbjct: 61  TLDGEAYYQRCLIILADIEDAEMAFAGA--KPRGLLRIDVHGTLARHFLLPGLPDFLAQY 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI+  +   ++ +D   +  DC +R+ K ++ S +  R+L  +     AAP YL+    
Sbjct: 119 PDIEFYMSEGDRLVDPVREGIDCVVRVGK-LKDSDMAARRLGELEEITCAAPEYLRRFGT 177

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PLSI +L  H ++ F       +           P      S + V++  S++    +G 
Sbjct: 178 PLSIDQLQGHRMVGFRSSATGAVMPLE-FNVNGLPQQVTLPSTVSVSAAESLVAAARMGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           GI  +P Y + D+    +L+ ++    +    V   YP   + + +++ F ++
Sbjct: 237 GIIQVPRYHLLDDLTNGSLLPLLPQCPSTPMPVSLLYPRNRQLSPRVRVFIDW 289


>gi|222081129|ref|YP_002540492.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725808|gb|ACM28897.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 304

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 137/296 (46%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LRVF  VA   SFT AA++L LS +  S+ +  LE+ +G +L  R +R +++TE
Sbjct: 1   MDTLTSLRVFCTVAELKSFTAAADRLGLSPAMASKHVMHLESRLGTRLLNRTSRHVSITE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++   L+  +  +   +V P G L+ +  + +   L+   + E+   YPD
Sbjct: 61  TGMLYFNQARQMLDGLDEVEAAVSNVTVMPRGILKFSAPVWIANTLIARTIAEYHQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++  + L  + +++  +  D A+R   P +   SLI R L+ +  H   AP YL     P
Sbjct: 121 VRFDMDLSGRIVNLVDEGFDLALRATTPERLDPSLIARPLMEVGFHLVGAPAYLSRTGRP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++ +L+ H+L+ +  +       F      +     P    +Q  + + +    + G G
Sbjct: 181 VALTDLNGHSLLLYSGINASGSLTFKGPQGPETVNFRP---VMQSENEIMLHLAALEGMG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  LP ++ +       L  ++ D +  S T++  YP     + K++ F +F+  +
Sbjct: 238 LVFLPVWMTQTDIAEGRLELVLPDAVKFSATLHAVYPSRKYLSAKVRTFIDFLASR 293


>gi|330992242|ref|ZP_08316190.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter
           sp. SXCC-1]
 gi|329760441|gb|EGG76937.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter
           sp. SXCC-1]
          Length = 299

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 132/292 (45%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  R+F  V  S SFT AA+ L + +SS+S  I  LE  +G +L  R  R +  T 
Sbjct: 1   MDRIDLFRIFARVVESASFTRAADTLKMPRSSVSAAIQELENRLGTRLLARTTRSVAPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E  +   +  +  P G LR      +G+ L+   L  FL  YP+
Sbjct: 61  DGTAFYGHCLRLIADMEEAEGLFRPDAAGPRGLLRANMPGRIGRLLVAPALPAFLRRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L + ++ +++  D  DC +R+  P+  S LI R++  + +   A+P YL     P 
Sbjct: 121 IDIELGVTDRVVNLVEDGIDCVLRVG-PLGDSGLIARQMGELALVNVASPAYLARRGTPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +LD H  + +       +ED+ W+              + VNS  +++  C+ G G+
Sbjct: 180 HPADLDGHEAVRYAAPTTGRVEDWEWMED-GTLHTRALPGRVSVNSAETLVACCLAGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V+ +     LV +M         +   YP     + +L+ F +++
Sbjct: 239 IQVPAYDVRHHIAAGELVDVMPRWRPEPMPMALLYPHRKHLSRRLQVFADWL 290


>gi|328474658|gb|EGF45463.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 298

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 136/296 (45%), Gaps = 9/296 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT 
Sbjct: 4   KVNLADIRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G + +    +    ++   I   + + +  G +R+      +G++++   + EF+  YP
Sbjct: 64  AGERFYHDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I L   +  ID+  D  D A R+ + +  +  + RKL+T+ M   A+P Y++    P
Sbjct: 124 NVSIDLDFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL +H  +T           +      +          L+  +  +++   + G+G
Sbjct: 183 KHPKELAEHRTLT----GSVTRWSYRKAENPNDHADVVVKGNLRCKNGRALVMGALHGNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P     +      L+++M D   PS      +        +L+ F +FI  K
Sbjct: 239 IIRVPLSYCAEEVELGQLIKVMPDWEIPSVPFSAIFHRDRYQPKRLRTFIDFIKQK 294


>gi|148555991|ref|YP_001263573.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148501181|gb|ABQ69435.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 320

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 127/295 (43%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   LRVF  V  +G+F+H  ++L +  S++S+ IS LE  +G +LF R  + L +TE G
Sbjct: 21  NLALLRVFVAVVETGNFSHTGQRLRVVPSTVSKHISALEKRLGGQLFVRSTQKLGVTELG 80

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+     +   +E  +I++ E + +P G L+IA      Q  L   L  FL   P + 
Sbjct: 81  LRLYDHALAILQDVEAAEIDISEYNSEPQGILKIAAGTVFAQRHLAPILIRFLEANPKVS 140

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L      +  D  D AIR+   +    LI  KL        AAP YL     P   
Sbjct: 141 LDVSLSTTSNHLISDGIDVAIRISDAL-DPGLIAVKLAPNIRLYCAAPAYLAREGTPARA 199

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN +    +                 I          ++   ++Q  V G GI  
Sbjct: 200 SDLARHNCLVVRGVAQSAQWPIKGETGATEFIAV--SGNFVADNVDLLLQAVVAGVGIGH 257

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP ++V D   + +LV I  D    +  +Y  +PE      K +AF + +  + R
Sbjct: 258 LPLFMVYDLLASGDLVEIFPDSRAVASHIYAVFPERRNMPLKTRAFIDHLKAEFR 312


>gi|323179530|gb|EFZ65097.1| hypothetical protein ECOK1180_1835 [Escherichia coli 1180]
          Length = 299

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+HAA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSHAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 61  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|269104466|ref|ZP_06157162.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161106|gb|EEZ39603.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 302

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 142/297 (47%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +++F  V   GSF+   + L+++ SSI+R I  LE E+ + LF+R  R LTLT++G 
Sbjct: 2   FNLIKIFLKVVEVGSFSKTGQILNMAPSSIARNIDQLEKELCVTLFHRTTRQLTLTDEGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++  +E+ H  +    + ++ +  P G +RI+     G+  +   L +FL  YP++++
Sbjct: 62  DFYQGATELIHNADALFNQTKKQNQHPQGTIRISVFESFGRQWISPLLPKFLAQYPEVKV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L+N+ +DI+ +  D  IR+ +P   S L  R L+       A+P YL N        
Sbjct: 122 EIELENRMVDINSENIDLGIRIGRP-ADSGLHARMLLPNQTWLCASPTYLANSEPLNCPH 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ HN +   +   K    FN      + +       +       +++  V   G+ L+
Sbjct: 181 DLENHNCLLLNNDRQKVYWYFN---NGKQCLRVSVAGNITSKGGTPLVEAAVAHGGVVLM 237

Query: 245 PDYIVKD---NPNLVRIMEDVIT-----PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++++ D      L+R + +  +      S  +Y  Y  +      L+AF +F+  +
Sbjct: 238 SNWMMVDLVKEGKLIRCLPNWHSSMHEGSSGEIYAVYSGSKFPRPALRAFIDFLVAE 294


>gi|262173272|ref|ZP_06040949.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|261890630|gb|EEY36617.1| transcriptional regulator [Vibrio mimicus MB-451]
          Length = 300

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L   +  +D+  +  D A R+ K ++ +S I RKL  + M   A P YLK C +P
Sbjct: 125 EVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFIARKLTDVAMSTLATPAYLKQCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +T G +     +      T+D PI       LQ  +   +++  +  +G
Sbjct: 184 QHPKQLAEHRCLT-GSVKRWSYQHNTTQQTIDVPID----GDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +  ++      LV +  D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCQEEIARGELVEVFPDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|332307635|ref|YP_004435486.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174964|gb|AEE24218.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 294

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 127/295 (43%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R F  VA+  SFT  A+QL +S    S+ I+ LE + G  LF+R  R +TLTE
Sbjct: 1   MDTLDGMRTFIAVAKQKSFTGGAKQLGISTKLASKYIAQLEQKHGALLFHRTTRSVTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + E  +  +Q      SG +R+      G   L   L  FL  +P 
Sbjct: 61  TGQAYFARCVPLLEQFEELEDVIQHRQSALSGTVRLTAPTAFGSTKLVDALAPFLAQHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L ++ + I  +  D A+R   P++ S+LI ++L+ + +  +A+P YLK   +P 
Sbjct: 121 INVELNLSDQYVAIIDEGVDVAVRFG-PLKDSTLIAKRLMDMRIVFFASPEYLKRNGKPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
               L  HN +    L     +  NW    D       +S     NS  ++      G G
Sbjct: 180 HPCALATHNCL----LQTSQNDPENWKFKEDGNTFTVNVSGDFASNSPRAVTHMASQGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I + P Y+ +    + +L  + E        +   Y        +++A  + + L
Sbjct: 236 IGMGPQYVTEPYVKDGSLQLLFEPYEASILELNAVYASNRHLPARIRALLDHLAL 290


>gi|293602121|ref|ZP_06684573.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553]
 gi|292819457|gb|EFF78486.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553]
          Length = 311

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 143/293 (48%), Gaps = 9/293 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ + D LRVF  V  +GS + AAE L  + S +SR +S LE ++G+ L  R  R + LT
Sbjct: 19  MALNSDALRVFLGVVDAGSLSAAAELLGQTASGVSRALSRLEEDLGVILLNRTTRRMELT 78

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   LE  +  ++    +P+G+LR+  ++ +  + +  ++ +F   YP
Sbjct: 79  EEGAHFLPKARQIIASLEEAEECMRMVHQRPAGRLRVDASVPVMLHCVVPHVGDFRREYP 138

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L  +++ +D+     D AIR+  P+  S+L  R L        A+P Y+     P
Sbjct: 139 EITLELTSNDRIVDLMEHRTDIAIRMG-PLTDSTLHARALRPSPRWMMASPDYIARRGAP 197

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L +H ++ F       +    W               L  +S  +  Q  + G G
Sbjct: 198 ETVEDLAQHEVLGFTQPESLNL----WPLKHAGGSSFQATPTLATSSGETQRQLALRGVG 253

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNF 289
           IA L D++V+++     LV++M+ V +     ++  Y    + + ++  F +F
Sbjct: 254 IACLSDFVVREDIAAGRLVKVMQGVYSDHLQPMHAVYHRNTQLSRRIACFLDF 306


>gi|288935131|ref|YP_003439190.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889840|gb|ADC58158.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 296

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/292 (28%), Positives = 138/292 (47%), Gaps = 14/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F  V   GSFT AA+ L + + ++S+ I  +E ++G+KL +R  R L++T +G 
Sbjct: 2   IEYLNIFVQVVEQGSFTRAADILQIHRPTVSKAIQQIEDDLGVKLIHRTTRKLSVTAEGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V  ++          ++ P G+LR+   + L   +L  NLK F  LYPDI +
Sbjct: 62  AFYHRARLVLSEVNDMMASF-SPTLPPRGRLRLDVPLALAHAILIPNLKHFQSLYPDIDV 120

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+  +K  D+  +  DC +RL + +Q SS I R+L  I M   AAP YL     P ++ 
Sbjct: 121 VLVSSDKRTDLITEGVDCLVRLGE-LQDSSFISRRLGDIRMVTCAAPSYLLQHGRPETLA 179

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGI-- 241
           +LD+H  I F        +   W  T D  I   R +  + V++   ++   + G GI  
Sbjct: 180 DLDQHRAINF--FSDHSRDVMEWKFTKDGKIVSLRPVGSMLVDNSDILLSCGLAGLGIIQ 237

Query: 242 ----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               AL P      +  L  I+    + S  V   YP+    + K++ F ++
Sbjct: 238 ATFNALAPHIA---SGALEEILTQYPSVSKPVSVMYPDRRYLSPKVRVFIDW 286


>gi|218674395|ref|ZP_03524064.1| LysR family transcriptional regulator [Rhizobium etli GR56]
          Length = 307

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 135/294 (45%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L      A   S+  AA    +S S+I + I+ LE  +G++LF R  R ++LTE
Sbjct: 1   MDGLASLFALVYAAEQQSYVGAARVAGISPSAIGKSIARLEGRLGVRLFNRTTRSISLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+ L+     +   ++  +  +  S  +P G+LR++    +G +LL   L  F   +P+
Sbjct: 61  EGAVLYERYKRIIDDMQDAEAGILRSRQRPRGRLRVSVPHIVGHHLLMPILPMFAARFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  +++ +D+  +  D  +R  + +  + LI R L   H     +  YL     P 
Sbjct: 121 IELDIDFEDRVVDLVAEGLDAVVRSGE-LADARLIARHLGEQHFVVCGSADYLDRRGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I F       +  +++    DR +       L  N+  + ++    G G+
Sbjct: 180 TPNDLSGHACIHFKYPSSGRIAPWSFHQPYDRLLLPKN---LTFNNTDAGLRAAQDGLGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A LP Y+ + +    NLV ++   + P  ++   +P   + + K++AF +F+  
Sbjct: 237 AHLPVYVAQPHLRAGNLVPVLTAFMAPFGSLSLVWPSNRQLSPKVRAFVDFVVE 290


>gi|298487206|ref|ZP_07005255.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158230|gb|EFH99301.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 305

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMIVIPALPEFARRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 IRLEIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASRDYLQRYGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H +I +            ++A     + +     + VNS    +  C  G G+
Sbjct: 180 NLPDLAQHQVIEYFSTSTGKRYGLEFMAG-GVEVDQALACSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V        LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWLVE 292


>gi|296162233|ref|ZP_06845028.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887500|gb|EFG67323.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 305

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 146/299 (48%), Gaps = 8/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE
Sbjct: 1   MDRFEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  ++   +  L      P+G +R+ T+  L + LL   L +F   YP+
Sbjct: 61  DGALFYERCVRILAEVAEAESSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L +++ID+  D  DC IR+  P + SSL+ R++    +   A+P YL+   EP 
Sbjct: 121 IDVRLGLADRNIDLIQDGVDCVIRMGTP-EESSLVARRIGQARIVTCASPAYLEKYGEPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +++ L +H  + +  +  +  + F +   VD  + +  + S L VN     +   VLG G
Sbjct: 180 TLEALSEHRAVNY--VSARTGKTFPFEYEVDGELAKVTLKSVLAVNDGSVYIGAAVLGHG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I     ++V D      L  I+    +P   +   Y      + +L+AF  ++   AR+
Sbjct: 238 IIQPSRFMVSDLIKQGALKEILTTYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARN 296


>gi|171323082|ref|ZP_02911716.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171091525|gb|EDT37152.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 305

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 133/290 (45%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AAE L +SQ ++S+ I+ LE  +G  L YR +R L+LT  G
Sbjct: 6   DLEAWAIFARVAETGSFAQAAELLGISQPTVSKAIARLEKRLGAMLLYRTSRKLSLTPTG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  + E    +++P G +R+   +  G   L   L  FL  YP + 
Sbjct: 66  ELLRDRAIRLLADAELIESEASAQALEPHGLVRVNAPMSFGLRHLSPLLPAFLERYPRVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L +  +DI     D AIR+ + +  SSL  R+L  +     A+P YL+    P   
Sbjct: 126 IDLVLSDHIVDIVSGGFDVAIRIAE-LSDSSLRSRRLCAVRRPLVASPAYLERRGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++++H  +T+ +L       F   A+    +G      ++ N+   I    + G G+AL
Sbjct: 185 RDIEQHVCLTYTNLPTPEHWRFRNPAS-GEDVGVSVHGRIRANNADVIAPALLAGHGLAL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++V D      L  +M +       V    P  +    ++    +F+
Sbjct: 244 QPEFLVWDALQRGELEEVMPEWKIADINVNLVTPPGMLRAARVTVLLDFL 293


>gi|89072784|ref|ZP_01159341.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89051306|gb|EAR56761.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 301

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + VF  V + G F  AAE    S S +S++I+ LE+ +G++L  R  R + LT +G 
Sbjct: 7   FDGITVFVQVVKCGGFGAAAEVTGHSSSYVSKEIAKLESRLGVRLLNRTTRSIALTPEGK 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++ +  E +  E+ +S+++P G L+++  +  G+  L      +L  YP+  +
Sbjct: 67  TYYQECVQLINDAEQSVAEITKSTIEPKGTLKVSCPVWFGKYYLADVFTTYLSRYPEATL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +K ID+  D  D  IR    +  SSLI +++ +  +   A+  YLK+        
Sbjct: 127 DLDMSDKSIDVIADGYDLVIRATAKLDDSSLICKRIYSSRICTVASKQYLKDYGYLQHPS 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+   + +L  K    + +   V           +  N+    +     G GI  +
Sbjct: 187 ELSDHSCFCYSNL--KKFNVWGYRDRVGNKTLVDVHQRVSSNNTEMSLALVNNGLGIIRI 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P++ ++    +  LV + +D I P   VY  YP     + K+K F   +
Sbjct: 245 PEFYIETQLQSGELVLLFDDYIPPQLDVYALYPTRKHLSAKVKCFIEIL 293


>gi|167893701|ref|ZP_02481103.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei 7894]
 gi|167918407|ref|ZP_02505498.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei BCC215]
 gi|237811722|ref|YP_002896173.1| LysR substrate binding domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|254298079|ref|ZP_04965532.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157808036|gb|EDO85206.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|237503859|gb|ACQ96177.1| LysR substrate binding domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 299

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 137/297 (46%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S V PSG LR      +G+ ++   L EFL  YP 
Sbjct: 61  DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVELGVTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H  + +       +  + W+   +      R + + VNS  + +  C+ G G+
Sbjct: 180 TPADLERHRPVNYASPSNGRVAPWEWVEGDEVKRVALR-ARVTVNSAEAYIACCLAGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V  +     LV ++ D       +   YP     + + + F  ++    R
Sbjct: 239 IQIPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLR 295


>gi|124265350|ref|YP_001019354.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124258125|gb|ABM93119.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 304

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 128/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  VA  GS T AA    ++ + I R+I  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDRLKQIESFAAVATKGSLTAAAGAEGVAPAVIGRRIDALEERLGVKLLVRTTRRITLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +   L   +  +    VK SG LR+      G+  +   +  F   + D
Sbjct: 61  EGSAFLEDAQRLLTDLANAEASVSAGGVKASGHLRLTAPAGFGRRHVAPLVPRFAEAHRD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +DI  +  DCA+R+   +  SSL+  +L        AAP YL+    P 
Sbjct: 121 VSVSLNLSDRVVDIVNEGYDCAVRVGD-LPDSSLVSLRLADNRRLCVAAPAYLQRAGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
              EL +H  +T      +      W  +VD  +   R S     +    +  +C+ G G
Sbjct: 180 HPGELGRHQCLTLSSNASQAR---GWAFSVDGELTHLRPSGRYDCSDGQVLHDWCLAGHG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V+    +  LV +++D   P   +Y  +P+      +++ + +F+
Sbjct: 237 IAWRSTWEVEQEVASGALVTLLDDFAAPPNGIYAVFPQRKHLPLRVRLWIDFL 289


>gi|326388478|ref|ZP_08210073.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207026|gb|EGD57848.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 297

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F VVA   SFT AA +L LSQS++S  +  LE  +GI+L  R  R ++ TE G
Sbjct: 5   DLADLSAFLVVAEERSFTRAAARLGLSQSALSHAMRRLEEHLGIRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL    +     +     ++     KPSG +R+  +    ++LL   L+  L  YPDI 
Sbjct: 65  EKLLATLAPAVDSIAEGITQIGRLRDKPSGTIRVTVSDHAARSLLWPALERLLPDYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN  IDI     D  IRL + +    +  R    + M    AP Y +    P + 
Sbjct: 125 VEISIDNGFIDIVEGRFDAGIRLGEAVARDMIAVRIGPPMRMACVGAPAYFERHPVPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I         +  + W    D  I   R+   L  +     +Q    G G+A
Sbjct: 185 QDLAHHTCINLRMASSGAL--YAWEFEKDGRIMNVRVEGQLTFSGSSMAVQAAEAGFGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  + +V+++     LVR+++D   P    +  YP   +++       + +
Sbjct: 243 MTIEDVVRESITQGRLVRVLDDWCPPFPGYHLYYPSRRQSSPAFALLVDAL 293


>gi|319776354|ref|YP_004138842.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           F3047]
 gi|317450945|emb|CBY87172.1| putative HTH-type transcriptional regulator [Haemophilus influenzae
           F3047]
          Length = 306

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 138/294 (46%), Gaps = 11/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     +   +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGMMYYQRCQGILLDLDEADSSITHLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKIDLLSEGYDLALRI-DYMEDSSLVSRKIGTTTVHFAASPNYLETNGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----AMNPVNWVGSRINQTQRFKIQSKVVSNSAFALLNMAKAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA-FRNFI 290
           IA LP +I+    +   L+ I+ +       ++  YP       K++A F  F+
Sbjct: 236 IANLPKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKVRALFIEFL 289


>gi|261251033|ref|ZP_05943607.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
 gi|260937906|gb|EEX93894.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
          Length = 299

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE   L+ S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVEMGSFSKVAEANSLTNSVVSKRIARLEEEIGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +    V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LTQGAKTVKQATQEAMDAVSGFGENVSGHIKMSVPSISGDLILADAVAEFCNLHPGLSVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +P   Q+
Sbjct: 124 MSLDNRFVDLVEGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPAYIARNSKPNDPQD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   W    ++     ++S     ++  ++ +  + G G+A +
Sbjct: 183 LTLHNCLQYAYQTTGASE---WEFKAEQGNYIVKVSGSFSTDNATALRKAALGGHGVAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V  +     LV +  + +     +Y  YP   +   K+K     I  +
Sbjct: 240 PRCLVYHDIRNGQLVDLFPEQVGKRLGIYAVYPFTRQPPNKVKLLIEHIRTR 291


>gi|90414557|ref|ZP_01222531.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
 gi|90324364|gb|EAS40930.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
          Length = 291

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 141/284 (49%), Gaps = 3/284 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V ++G FT AAE L L +S++SR+++ LE+++G++L  R  R + +TE G    
Sbjct: 1   MVIFARVVQAGGFTAAAEILALPKSNVSRRVARLESDLGVRLLERTTRKIHVTEIGEIYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + E   + +Q    +P G LR++ ++  GQ LL   L  F+  +P+I++QL 
Sbjct: 61  HHCLRIIEESEHADLSVQSMVAEPRGILRVSASVTTGQQLLAPLLPSFMAQFPNIELQLE 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ ID+  +  D AIR+   ++ S L+ RKL     H YA+  YL         ++L 
Sbjct: 121 LTNRRIDLIEEGLDVAIRVGL-LEDSRLVSRKLGVSQHHLYASQTYLDQQALLTEPEQLC 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++   D      +    L   ++            N + S+ Q+   G GIA+LP Y
Sbjct: 180 SHRVLLMSDQA-GAKKHVVVLNKNEQTQQISVQPLCTANDFHSLHQFAKQGMGIAVLPHY 238

Query: 248 IVKD-NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  D +  LVR++     PS   +  YP     T KL+ F +F+
Sbjct: 239 MCHDPDDKLVRVLPAWSCPSLDFHAIYPSHRGATPKLRVFLDFM 282


>gi|83720032|ref|YP_443330.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167620459|ref|ZP_02389090.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257139575|ref|ZP_05587837.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83653857|gb|ABC37920.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 299

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L YR  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLYRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S+V PSG LR+     +G+ ++   L EFL  YP 
Sbjct: 61  DGAALYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPEFLDRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVELGLTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H  + +       +  + W+   D          + VNS  + +  C+ G G+
Sbjct: 180 TPADLERHQPVNYASPTNGRIAPWEWVEG-DAVKRVALRGRVTVNSAEAYIACCLSGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V  +     LV ++ +       +   YP     + + + F  ++    R
Sbjct: 239 IQIPAYDVDAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAQWLEALLR 295


>gi|33595174|ref|NP_882817.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33565251|emb|CAE36049.1| probable LysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 329

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 134/296 (45%), Gaps = 7/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AA+ LH+S++S+++ +  LE  + ++L  R  R +  T 
Sbjct: 1   MDRFDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNATA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    ++   LE  +  L  +S  P G+LR+         +L   L  F   YPD
Sbjct: 61  DGAAYYERVRQLLADLEDAETSLSGASATPGGRLRVDVPSPFASTILVPALPAFQARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L + ++++D+  +  DC IR    I + SL  R +  + +  YA+P YL     P 
Sbjct: 121 ILLHLGVSDREVDLIDENVDCVIR-GGQIGNLSLAARHVGDLQLGVYASPGYLARAGVPA 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL   +H +I F     + +         D  I       L ++   + +   +   
Sbjct: 180 HPRELQDAQHRIIGFSWSRARRLFPCAMRRRADERIEVAGRHALLLDEGNAYLAAGLAAM 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  +P Y+ +   +   L+R+  D       +Y  YP+    + KL+ F ++I  
Sbjct: 240 GVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHVSAKLRVFIDWIVE 295


>gi|116253521|ref|YP_769359.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258169|emb|CAK09270.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 302

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 135/294 (45%), Gaps = 10/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +RVF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +E  +     +  KP G LR+     L ++ +  +L  FL  YPD
Sbjct: 61  DGEAYYQRCLSILADIEEAEGAFAGA--KPKGMLRVDVHGTLARHFVLPSLPSFLETYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+  +   ++ +D+  +  DC +R+  P Q S ++ R++  +     A+P Y+    +P 
Sbjct: 119 IEFYMSEGDRLVDLVREGIDCVLRVGTP-QDSDMVARRVAMLDEVTLASPAYIARHGKPE 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             + L  H ++ F       +    ++  VD  +    I + + VN+  S +    LG G
Sbjct: 178 HPERLAGHRMVGFRSSGTGSLLPLEFI--VDGAVANIGIPATVAVNAAESYISAARLGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +P Y  + +     LV+++ D       V   YP   + + +++ F +++ 
Sbjct: 236 MIQIPRYHAEKDLAEGTLVQVLPDFPLTQTPVSLLYPRNRQLSPRVRVFIDWLV 289


>gi|91781381|ref|YP_556588.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91694041|gb|ABE37238.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 322

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 125/298 (41%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF      GSF  AA +  LS +   + +S LE E+  +L  R  R L+LT+
Sbjct: 1   MDRLTSLGVFVAAVEEGSFAAAARRFGLSAAMAGKHVSALEAELNARLLQRTTRRLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +    +  + E  +S     G LR+A     G   L   +  +L  +P 
Sbjct: 61  TGQTYYERCKRILEAFDEARREASDSQGTARGVLRVAAPATFGAMHLGEVVARYLEDHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++L ++ +D+     D AIR+ + +++  L+ R+L    M   A+P YLK    P 
Sbjct: 121 VNVEVLLGDRYLDLIEAGVDVAIRIGR-LENPGLVTRRLALCRMVVCASPAYLKRHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     + F + +     D+      +R         +  N+   ++   + G+GI
Sbjct: 180 KPDDLMHAQRLVFSEAVSAG--DWTLRDGKNRAHVIDGPCRMTANNTQMLLASALAGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              P ++   +     LV ++ D      T+   YP A +   K++ F +++     D
Sbjct: 238 VYGPTFVFGAHIRRGELVALLPDYRPADLTIQAVYPSARRIPLKVRRFVDYLAEAFGD 295


>gi|271499419|ref|YP_003332444.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342974|gb|ACZ75739.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 319

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D L  F  +A  GS T  A +  LS  ++S++++ LE  +G++L  R  R L LT +G
Sbjct: 3   SIDDLLFFSRIAALGSLTAVARESGLSLPAVSKRLTQLEQRLGVQLIRRTTRRLDLTPEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    + H++E  + +++ + +   G+L +  +   G+  +   + EF  L+P+++
Sbjct: 63  QLYAEGALPILHEIEELESQVRRNQLTLRGRLTVNASFGFGRRHIAPLISEFARLHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL L ++ +++     D  IR   P   S L+  +L+       A+P YL  C  P ++
Sbjct: 123 MQLQLTSQPLNMLDAGVDIDIRFGAP-PDSRLVAHRLMANPRVLCASPAYLARCGTPKTV 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN +                              L  N    IM+Y + G GI L
Sbjct: 182 ADLAEHNCLVLRQYESDYGLWR--FYRDGHEFTHRAFGNLSANDGEVIMRYALDGHGIIL 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V+    N  LV ++ D I P   +Y  Y +      ++ AF  ++
Sbjct: 240 RSLWDVRSWLGNGRLVALLPDYIMPEADIYAVYQQRRHVPARISAFIAWL 289


>gi|323498254|ref|ZP_08103256.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323316682|gb|EGA69691.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 311

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 126/291 (43%), Gaps = 7/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  +FT AA+ L +S S +S+Q++ LE  +G+KL  R  R  T TE G + 
Sbjct: 8   QMVVFATLLKHKNFTVAAKNLGVSVSHVSKQLAQLEESLGVKLVQRTTRTFTPTEAGEQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++ H +E  Q E++    + +G ++I  +   G   +   + E  + YP++Q+++
Sbjct: 68  FHHCQQIVHSVEEAQREIESQRDEVAGLIKIGLSQSFGTLHILPAIDELRVRYPNLQVEM 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + ++L        A+P YL     P    +L
Sbjct: 128 HLFDYRVDMLQEGLDLWITNNETLP-EGYVAQRLADSKFVVAASPDYLMKHDTPHHPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +              +  D  +         V+   ++    V G GIA L  
Sbjct: 187 GEHNCLIYRSWERDYTSWA--FSRSDEQLNVKVSGNYSVDLAEAVRDAAVAGWGIAYLAT 244

Query: 247 YIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y+++D   +  L++++ D         Y  YP       K  A  +FI  K
Sbjct: 245 YLIRDEFKDGQLIQLLPDWQASQDMPFYAVYPSRRYLPTKTAAVIDFIKQK 295


>gi|73538817|ref|YP_299184.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72122154|gb|AAZ64340.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 304

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 129/290 (44%), Gaps = 5/290 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + +F  V   GS + AA  + LS +  S+++  LE ++G++L +R  R L  T +G+ L
Sbjct: 6   DIGLFLRVLDLGSISAAARSMDLSVAVASQRLQRLERDLGVRLLHRTTRRLHATPEGAIL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L+     L+++    SG LR+ T+   G+  +   L EF+ ++P +++  
Sbjct: 66  AEQGRALVEDLDALGSSLRQAGSSISGTLRLTTSSSFGRLYISPLLPEFMAIHPGLKLSF 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +  +D+     D AIR+   +  S+L+ RKL +      A+P YL     P + Q+L
Sbjct: 126 TMTDNVLDLVSAGFDLAIRIG-TLDDSTLVARKLASNRRLLCASPEYLSRRGTPRTPQDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +       +  + ++        I       ++ NS   +    + G GIAL   
Sbjct: 185 ASHDCLVLVGSQGR-QDVWHIGDGAGGEIAVRVRGPIEANSGELLSDAALAGLGIALHST 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + V        LV ++ D       +Y   P+      +++AF +F+  +
Sbjct: 244 WHVCAALRKGQLVPVLADYPLAESGIYAVMPQRRLVPPRVRAFVDFLAER 293


>gi|107027275|ref|YP_624786.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691328|ref|YP_836861.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896649|gb|ABF79813.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649328|gb|ABK09968.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 305

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 143/301 (47%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE  +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+YH+ E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTISEKAGEIYHQAEEAESSAREMSVQPRGLVRLAVPMSYGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +     A+P YL+    P   
Sbjct: 126 IDLHLSDASVDLVADGFDAALRIAA-LPDSSLVARRLCAVTQFVVASPEYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL     +++       +  F   A  + P+       L+V +  +++   + G  IA 
Sbjct: 185 RELVDRPCLSYAYRARSAVWRFTNDAGEEEPV--MPTGPLRVTNSDALLPTLLDGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD--WK 298
           LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++      +  W+
Sbjct: 243 LPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVAALSDYFAEHLSEPTWR 302

Query: 299 F 299
           +
Sbjct: 303 W 303


>gi|330809716|ref|YP_004354178.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377824|gb|AEA69174.1| Putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 293

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 130/283 (45%), Gaps = 8/283 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A + SF+ A   L +S S++ + ++ LE  +G++LF+R  R +TLT +G+      
Sbjct: 10  FVRAAETRSFSEAGRALGISSSAVGKSVARLEERLGVRLFHRSTRSITLTAEGTLFLERC 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  ++E  ++EL E+   P GKLR++    L  +L+   L  F+  YP I++ L   +
Sbjct: 70  RRILCEVEAAELELSETRKAPRGKLRVSLP--LVADLVMPTLMAFMRRYPSIELDLDFSD 127

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +DI  +  D  IR  +P   S L+ R L    +    +P YL     P    +L +H 
Sbjct: 128 RLVDIIEEGFDAVIRTGEP-NDSRLMSRPLGAFKLVVVGSPRYLAEHGTPQVPTDLLRHA 186

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + +    P       W    +        + L  N+  +++       GIA +PD+ V+
Sbjct: 187 CLLYK--FPSTGRMQVWPINGEGQPDLNLPATLVCNTTEALLYVVRDALGIACVPDFTVR 244

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D   +  LV +++D      T    +P +     KL+ F +F+
Sbjct: 245 DAIASSELVTVLDDFNRHQSTFRMLWPSSKHLAPKLRVFIDFM 287


>gi|167035256|ref|YP_001670487.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861744|gb|ABZ00152.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 305

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 138/293 (47%), Gaps = 5/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR F  V+   SFT AAE L L +S++S Q+  LE  +G +LF R  R +  T
Sbjct: 1   MVNKLELLRTFVRVSEVSSFTQAAESLGLPRSTVSEQVRALERLLGTQLFNRTTRRVQAT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ L+  + ++   ++  +        + +G+LRI     + + ++   L +FL  +P
Sbjct: 61  QDGALLYERSKDLLSGMDEIESLFSADDAELAGRLRIDLPTMMARRVIIPALPQFLQRFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +D+  +  DC +R+   +Q   ++ R +  + M   A+P YL     P
Sbjct: 121 RLEVELSCTDRQVDLLREGFDCVMRIGA-LQDLDVVARPVGQLSMRNCASPAYLARYGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++Q+L  H L+ +   +      F +L   +    +     + VN+  +    C+ G G
Sbjct: 180 RTLQDLADHQLVHYVRTLGARSAGFEYLQGGELQF-QAMAGVVTVNNAEAYSAACLAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +P   V ++     LV ++ED   P+  V   Y        +++AF  ++
Sbjct: 239 LIQVPAVGVAEHLQRGELVSLLEDWQAPAMPVSLLYARQRHVPRRVQAFMQWL 291


>gi|167565109|ref|ZP_02358025.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 303

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 138/298 (46%), Gaps = 12/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F VVA +G F+ AA QL  + SS++R +  LE  +G+ L  R  R +TLT+ G+  
Sbjct: 6   ALQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L      + ++  +P G LR++  +   + +L  +L  FL  YP + + L
Sbjct: 66  LDQIGALLSQLVEADESVADAGSEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +  +D++ D  D A+R+  P Q   L+ R+L+       A+  YL     P++  +L
Sbjct: 126 VVSDAYLDLATDRIDVAVRIGAPAQDPGLVVRRLMENRRIVVASHDYLDTMGTPVAPGDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  + F    P      +W  + D    +  +   L  NS   + +  + G GIAL+P
Sbjct: 186 ASHRCLRF----PYRQGRQSWTFSRDGQSDKVEVNGRLTANSLDILRESVLSGQGIALVP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKARD 296
            ++V D+     ++ + E            VY  Y    +++ K++ F  F+  +  D
Sbjct: 242 TWLVHDDVAAGRMLPLFESWCVTPPGGGAQVYAAYLPNRRHSRKVQTFIAFLAERMPD 299


>gi|323499389|ref|ZP_08104365.1| Transcriptional regulator, LysR family protein [Vibrio sinaloensis
           DSM 21326]
 gi|323315574|gb|EGA68609.1| Transcriptional regulator, LysR family protein [Vibrio sinaloensis
           DSM 21326]
          Length = 298

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 147/293 (50%), Gaps = 6/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V   GSFT AAE L +++S++SR+++ LE  +G++L  R  R L LT +
Sbjct: 1   MDLNAVNVFTQVVDCGSFTQAAESLGMTKSTVSRKLAELEQHLGVRLITRSTRSLILTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++ + ++   +   ++E+  +     G L +   ++LG  +L   + +FL+ YP +
Sbjct: 61  GERFYQSSQQMLEIMTQAELEVSANQDLIRGPLSVVLPVELGHQVLGSYINQFLVQYPHV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L N+++DI  +  D   ++ + ++ S+L+ R L        A+P YL    E  S
Sbjct: 121 TMNLELTNREVDIIAEGIDLYAQIGE-LEDSNLVSRYLAASKRALVASPDYLNQFGEIHS 179

Query: 183 IQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L   H ++   +   + +  ++  A   + I       L+VN+  S +Q C+ G GI
Sbjct: 180 HHDLTAPHQMVEVFNKAVR-LPKWHLQAENGQSIQIDLPHRLKVNTITSCLQGCIAGLGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A+LP++I  ++     LVR++ D   P   V   Y +      + K   +F+ 
Sbjct: 239 AVLPEFICLEHFATGKLVRLLPDYKMPEVGVSLVYADRQLMPKRKKVLIDFLL 291


>gi|295095336|emb|CBK84426.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 311

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 142/300 (47%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     + VF     +GSF  AA +LHLS+S++ + I+ LE  +G++LF+R  R   LT
Sbjct: 1   MTDTLKDIPVFVASVEAGSFAQAAVRLHLSRSAVGKSIARLEERLGVRLFHRTTRSQRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+  +        ++   +  L+    + +G+LR+A  +  G+  +   L E    +P
Sbjct: 61  DNGALFYERCLRALEEIRGAESLLETGKQQVTGRLRVAMPVLFGRQCVAPLLIELAQEHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++   ++ +D+  +  D A+R      SS L+ RKL    M   AAP YL    +P
Sbjct: 121 GLELEMSFSDRVVDLVEEGFDMAVRNGTLQDSSVLVARKLGEHRMVLCAAPDYLLKNGQP 180

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            ++ +L +H  I +   G ++P  + D++  +    P      S L ++   +I    + 
Sbjct: 181 QTVDDLRQHTAINYTRAGRVLPWQLMDYDGTSRTFIP-----RSSLNMDDLQAICDAALA 235

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+A LP ++V       +LV +++      F V+  + +      +++   + +  + 
Sbjct: 236 GHGLAWLPCWMVIKEIQQGDLVPLLKQAPDVRFDVHAVWQQTPHLPLRVRIAIDMLVKRL 295


>gi|264676383|ref|YP_003276289.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262206895|gb|ACY30993.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 287

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 137/291 (47%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +   GS   AA+ L LS +++S+Q+  LE ++G  L  R  R ++LT+ G   +
Sbjct: 1   MRAFRRIVELGSIARAADALDLSSAALSKQLRALEAQLGAVLIQRTTRRMSLTDTGRAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +T +  ++  S++ +G+LR+   +    + L   L  F+  +P +QI L 
Sbjct: 61  AECCRLLDGFDTLEQSVRAQSLQVTGRLRVNAPLSFALSTLAPLLARFMQRHPQLQIDLS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D      D +IRL   +  SSLI R+L ++     A+P YL+    P S+  L 
Sbjct: 121 MEDRLVDAVGQGFDVSIRLSAELADSSLIARRLASLSQMLCASPAYLQQHGRPASVAVLR 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+ +             LA VD  +  P  +   VN+ L + +  V G GI  LP +
Sbjct: 181 GHALLNYS------------LAQVDDGLQVPSEARASVNNSLMLRELLVAGMGIGALPSF 228

Query: 248 IVK---DNPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +       L  + ++D   P   VY  YP       K++AF +F+  + 
Sbjct: 229 LARPAIAQGQLEALALQDWAEPPRHVYVVYPTQRHLLPKVRAFVDFLAEEL 279


>gi|119899660|ref|YP_934873.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119672073|emb|CAL95987.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 307

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 140/299 (46%), Gaps = 7/299 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FD + L +F  VA  GSF+ AAE+L L +S++SR+I+ LE  +G +L  R  R L+LT+
Sbjct: 3   QFDANDLLIFARVAEGGSFSRAAERLGLPKSTVSRRITLLEERLGERLMLRTTRRLSLTD 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L     ++  +++      Q    +PSG+LR++   D   +LL   L  F+ L+P 
Sbjct: 63  FGLHLLEHARQLAAEVDAVASLAQHRQAQPSGRLRVSMPADFANHLLLDMLSAFVALHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L  + +D+  +  D AIR+      +SL  R++ +  +  YAA  YL     P 
Sbjct: 123 ISLDLDLSPRRVDLIGENFDLAIRIGDLPDDASLAARRIRSFPISLYAARDYLAERGTPR 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSG 240
              +L +H  +    L  +  E   W         E      +  NS  +++Q    G G
Sbjct: 183 VPDDLMRHEAL---RLFGRSGEPTPWRLLNGEQHWEGLPPGRITANSPETLIQLARAGQG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA +PDY    +     L+R++ +   P+ T +  +P       + +AF + +     D
Sbjct: 240 IAAVPDYFAVAHVRRGELLRVLPEWSLPANTAWAVFPGRKLMPARTRAFLDMVLAALPD 298


>gi|331008540|gb|EGH88596.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 305

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +     +   P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEASFSAAGAVPKGLLRVDLPVSLGRMIVIPALPEFARRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 IRLEIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASRDYLQRYGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H +I +            ++A     + +     + VNS    +  C  G G+
Sbjct: 180 NLPDLAQHQVIEYFSTSTGKRYGLEFMAG-GVEVDQALACSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V        LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWLVE 292


>gi|241205386|ref|YP_002976482.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859276|gb|ACS56943.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 310

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 137/296 (46%), Gaps = 5/296 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + +F  V  +GSF    + + LS+S+  + +  LE  +G +L  R  R L LT++G
Sbjct: 5   NLNDILIFMAVVDAGSFIAGGQTMGLSRSAAGKAVIRLEDRLGARLLNRTTRTLNLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++   ++  +  +   +  P G LR+      G+ ++   L+++L  +PDIQ
Sbjct: 65  RMFYERGLQILALVDEAEASVAGQNSTPRGVLRLTVPDAFGRLVVLPLLEKYLQAWPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++  DI  +  D AIR+      + L+ R + T      A+  YL    EP  I
Sbjct: 125 VEVSFTDRLADIVEEGFDLAIRIGATATDTRLVSRVIATYKARLCASSAYLAERGEPRDI 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ + F        + + +       I     S L+++S  +I    + G GIAL
Sbjct: 185 DDLAVHDCLIFAG--RNQRQGWRFRGEGGSWIKAQDRSRLRLDSAEAIRDAALAGLGIAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LPD++V D+     L +I+ D+ T    +   YP+      +++ F + +  +  D
Sbjct: 243 LPDFLVADDLVTGRLRQILPDLETDDVKIVTLYPDKRLLEPRVRRFIDLMVEELGD 298


>gi|78049436|ref|YP_365611.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037866|emb|CAJ25611.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 353

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 131/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE L +S++S+++ +  LE  + +KL  R  R + +T  G+
Sbjct: 49  FDAMQAFARVVETGSFTKAAEHLDMSRASVTQLVQQLEARLRVKLLNRTTRRVQVTADGA 108

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +  L  ++  P G+LR+     L + +L   L  F   YP+IQ+
Sbjct: 109 AYYERVLRLLADLDDAETSLSVAASLPRGRLRVDVPSPLARLILMPALPAFHARYPEIQL 168

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC IR    I   SLI R +  +    YAAP YL+    P    
Sbjct: 169 DMGVSDRRVDLIGENVDCVIR-GGTITDQSLIARHVGDLQAGVYAAPDYLQRLGTPTHPT 227

Query: 185 ELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL+  +H  + F          +  +   D  +       +  +   + +   + G G+ 
Sbjct: 228 ELENTRHRCVGFMRWGSSTTVPYV-MQRGDEAVRVHGRHVVAADDGNAYLAAGLAGMGVL 286

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP Y+   +     LV I +D    +  +   +P     + KL+ F +++  
Sbjct: 287 WLPVYMANAHVASGELVPIFQDWQLEAMPLSIAFPPNRHVSAKLRVFIDWVIA 339


>gi|320324680|gb|EFW80754.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 306

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 132/299 (44%), Gaps = 7/299 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L +R  R L LT+
Sbjct: 5   ALDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRKVQQLEIQLGTRLLHRSTRKLVLTQ 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H         L     +L     +P G+LRIA   D         + +FL  YP 
Sbjct: 65  AGEDFHERCVGAVDGLMDAAEQLVSGREEPGGRLRIAAMADFFDFFSMEWVADFLAEYPR 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREP 180
           +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     P
Sbjct: 125 VQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEGHDTMVASPAYIAAHGMP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+Q L  H  ++     P     +  L    +       S    N+  ++ +  + G G
Sbjct: 184 DSLQSLHGHYCVSTAH--PGGSTVWRLLGPDAKMHEVQMASRFNANTAQALRKATLAGLG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IALLP  +++    +  LV ++      S  ++  YP        + AF   +  K RD
Sbjct: 242 IALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKLRD 300


>gi|229589137|ref|YP_002871256.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361003|emb|CAY47865.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 298

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 131/296 (44%), Gaps = 5/296 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F + A  GS+  AAE+L+LS   +++ +S LE  +G +L  R  R  +LT
Sbjct: 1   MMDRLSSMSAFVMAAELGSYARAAERLNLSPQMVAKHVSALEQRLGARLLNRTTRRQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  +     +  + E      Q  +  P GKL+I   +  G   L   + EFL   P
Sbjct: 61  ELGSAYYERCKHILTEAEAADSLAQIMNDTPRGKLKITAPVTFGSYSLMPLITEFLRDNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L L ++ +D+  +  + A R+  P+ ++SL  R L    +   A+P YL     P
Sbjct: 121 EVEIDLHLTDRFVDLVDEGYEAAFRIG-PLATNSLTARPLAPYRLVVCASPAYLAARGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + +         ++  L     P      S LQ+N   ++M   + G G
Sbjct: 180 QVPADLMHHECLGYAFWSRPADREWV-LYQGPTPYRVQVASRLQINESRALMSAALEGFG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I L P+  ++       LV+++ +   PS  ++  Y    + T KL+ F   +  +
Sbjct: 239 IVLGPEDFLRPALLRGELVQVLANFEAPSRPMHLLYTANRQRTAKLRRFVEAVLER 294


>gi|170702385|ref|ZP_02893275.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170132699|gb|EDT01137.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 305

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 143/303 (47%), Gaps = 12/303 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE  +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTISEQAGEIYRQAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +     A+P YL+    P   
Sbjct: 126 IDLHLSDASVDLIADGFDAALRIAA-LPDSSLVARRLCAVTQFVVASPEYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGI 241
           +EL     +++       +    W  T D    EP +    L+V +  +++   + G  I
Sbjct: 185 RELADRPCLSYAYRARSAL----WRFTNDVGDEEPVMPAGPLRVTNADALLPTLLDGLAI 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD-- 296
           A LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++      D  
Sbjct: 241 AELPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARAAKVTALSDYFAEHLSDPV 300

Query: 297 WKF 299
           W++
Sbjct: 301 WRW 303


>gi|251791409|ref|YP_003006130.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247540030|gb|ACT08651.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 297

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F +VA+  SFT AA +L +SQS++S  +  LE  +G++L  R  R ++LTE G
Sbjct: 5   NFSDLISFRMVAQEKSFTRAAAKLGISQSALSHAMRSLEERLGVRLLTRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S   ++LE    +L E   KP+G +R+         +L   LK FL  YPDI 
Sbjct: 65  ERLLGNISPSLNELEYALEDLGEMRDKPAGNIRLTAGEHAVNFVLWPVLKPFLSQYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI  +  D  +RL + +    +  R    + M    +P Y  +   P + 
Sbjct: 125 LEITVDNTLTDIVHERFDAGVRLGEQVAKDMIAVRIGPDMRMAVVGSPAYFAHHPRPDTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q L +H  I     +P     F W  + D      R+   L  N+    +   + G G+A
Sbjct: 185 QSLQQHRCINM--RLPTLGGLFAWEFSRDGREIRVRVDGQLTFNNLQHRIDAALSGLGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  ++       L++++E    P    Y  YP   ++T     F + +
Sbjct: 243 YVPEDTIRSAVAEGRLIQVLEAWCEPFPGYYLYYPSRKQHTAAFSLFIDAL 293


>gi|107027809|ref|YP_625320.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693481|ref|YP_839014.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897183|gb|ABF80347.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651481|gb|ABK12121.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 297

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 9/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V   G+FT AA +L +S   + + +  LE  +  +L  R  R   LT+
Sbjct: 1   MDRLRAMETFVAVVEGGNFTEAARRLEISAVMVGKYVRELEERLAARLLERTTRRQNLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +         +   +  ++     PSG LRI+  I  G  ++      F   YP 
Sbjct: 61  AGRVFYEDAKRALEHMRIAETSVERLRASPSGTLRISAPITFGACVIAPLAATFRQRYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+++D+  +  D AIR+ + +  + L+ R L    M   A+P YL     P 
Sbjct: 121 VRVELELSNRNVDLIDEGFDLAIRIGE-LGDADLVARPLTRYRMVICASPGYLAQYGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L  H+ +       +      W    D        S    N    +    + G+G+
Sbjct: 180 TPQDLSAHHCLFHTVWSSRN----GWKLGDDDSTHFSAESGFTCNDGNGLRMAAIAGAGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            L P+ +V  +     LV++++        V+  Y +  +   KL  F   +  
Sbjct: 236 LLQPEVLVSHDLASGALVQVLQGYEPKPHPVHIVYRQDRRPLPKLTRFVAHLLE 289


>gi|167575001|ref|ZP_02367875.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 303

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 137/298 (45%), Gaps = 12/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F VVA +G F+ AA QL  + SS++R +  LE  +G+ L  R  R +TLT+ G+  
Sbjct: 6   ALQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L      + ++  +P G LR++  +   + +L  +L  FL  YP + + L
Sbjct: 66  LDQIGALLSQLVEADESVADAGSEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +  +D++ D  D A+R+  P Q   L+ R+L+       A+  YL     P+   +L
Sbjct: 126 VVSDAYLDLATDRIDVAVRIGAPAQDPGLVVRRLMENRRIVVASHDYLDTMGTPVEPGDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  + F    P      +W  + D    +  +   L  NS   + +  + G GIAL+P
Sbjct: 186 ASHRCLRF----PYRQGRQSWTFSRDGQSDKVEVNGRLTANSLDILRESVLSGQGIALVP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKARD 296
            ++V D+     ++ + E            VY  Y    +++ K++ F  F+  +  D
Sbjct: 242 TWLVHDDVAAGRMLPLFESWCVTPPGGGAQVYAAYLPNRRHSRKVQTFIAFLAERMPD 299


>gi|17545261|ref|NP_518663.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17427552|emb|CAD14070.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 305

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 145/299 (48%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAAVRLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S    ++E       E    P GK+R+    D+G+ L+   +  F+  YPDI
Sbjct: 61  GQSLYQVASHALEEIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMQQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQKQGVPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  HN + F        +    L   D        + L  +S   +      G+GI 
Sbjct: 180 VRDLSHHNCLDFRGTGRGETQWR--LVGPDGLKTVAVRARLNADSLSYLETLIASGAGIG 237

Query: 243 LLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP Y   + + N   P LVR++ +  T    ++   P A     +++   + +    R
Sbjct: 238 PLPLYAGGVARANAPLPRLVRVLPEYATSGEPLHLVTPTARFIPKRVRLLIDMLTEAIR 296


>gi|221066883|ref|ZP_03542988.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220711906|gb|EED67274.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 313

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 144/297 (48%), Gaps = 4/297 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + +++   VA   SFT AA  L  +QS ISR I+ LE ++G +L +R+ R ++LT 
Sbjct: 17  TMDLNAVQMLIKVAECKSFTQAAHILGTTQSRISRAIAQLEADLGTRLLHRNTRNVSLTP 76

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L   ++ +   LE  +  L +   +P+G LR+     LG+ +L   L   +  YP 
Sbjct: 77  DGFTLVDHSAALIAGLEEARQLLLDRRCEPTGVLRMTAPSVLGRVVLTPLLGPMMDRYPG 136

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI     ++ +D+  +  D A+R+  P+  S +I R+L  +      AP YL+    P 
Sbjct: 137 LQIDASFTDRVVDMVDEGFDAAVRIG-PLADSRMIARRLPPLRWVTVVAPSYLQAHGAPH 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++QEL +H  ++  +        + + A    P+       +  +S   +++  + G G+
Sbjct: 196 TLQELARHRCLSVYNHYLGFKVPWQFKAEGQEPLDWMPPQSISFDSGDPLVEGSLAGLGV 255

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A + ++ V+++     L+ ++ ++   S  +   YP     + K+KA    +  +AR
Sbjct: 256 AQVMEFAVREHIASARLIPVLTELEGRSRELSLVYPRTRHASPKVKALTQMLLEQAR 312


>gi|75675173|ref|YP_317594.1| LysR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74420043|gb|ABA04242.1| transcriptional regulator, LysR family [Nitrobacter winogradskyi
           Nb-255]
          Length = 304

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 136/294 (46%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF  AA  L LS++++S+ +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEALAIFAKVVELRSFAGAAADLGLSKATVSKAVSRLEDRLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    + +    E  + E    S  P G +R+A  +  G N++   L  FL +YP++ 
Sbjct: 66  KNLSERAARLLADGEAAENEALARSTVPRGLVRLAVPMTFGVNVIAPLLPGFLAMYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   +  +D+  +  D  +R+   +  SSL+ R+L  +  H  A+P YLK    P   
Sbjct: 126 VDLHFSDAMVDLIGEGFDVGVRIAS-LPDSSLLARRLCPMPRHTVASPAYLKAHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H+ + +  L    +  + ++              L+VN+  +++   + G GIA 
Sbjct: 185 MHLAQHSCLGYAYLSTPGV--WRYVNARGEQAAVRPSGRLRVNNGEALLPAIIAGLGIAD 242

Query: 244 LPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP++I+ D     ++   ++        V+   P       +++   +++  + 
Sbjct: 243 LPEFIIGDAIAAKQVEVLLKGWKQVEGAVHLVMPPGGPRPARIEVLIDYLAHQL 296


>gi|290511378|ref|ZP_06550747.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289776371|gb|EFD84370.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 303

 Score =  248 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 133/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V   GSFT AA +L LS   + + I+ LE+++  +L  R+ R  +LT+
Sbjct: 1   MDKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  ++   +  ++   + P+G LR++     G +++      FL  +P 
Sbjct: 61  AGRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+ +D+  +  D AIR+ + I    L+ R L    M   AAP YL     P 
Sbjct: 121 VRVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H  ++      +       L  ++  +   R + L+ N   ++ Q  + G+G+
Sbjct: 180 TPEDLADHLCLSHTVWTARNEWR---LPGMEGEVRWKRDAILRCNDGYALRQAAIAGAGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + P+ ++ D   + +LVR++E        V+  + +  +   KL  F   +
Sbjct: 237 LMQPEVLLADALASGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQFIAHL 288


>gi|119472999|ref|ZP_01614834.1| Transcriptional regulator, LysR family protein [Alteromonadales
           bacterium TW-7]
 gi|119444619|gb|EAW25930.1| Transcriptional regulator, LysR family protein [Alteromonadales
           bacterium TW-7]
          Length = 305

 Score =  248 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 125/295 (42%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  V   GSFT AA  L LS + ISR ++ LE  +  +L  R  R + LT++G 
Sbjct: 19  WDGIDEFIAVGEEGSFTAAARILGLSVAHISRHVTALEQRLNTQLLTRTTRKVVLTKEGE 78

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + H ++     L      P GK+++   +  G+  +   +  F+  +PD+++
Sbjct: 79  IFLHQIKHLQHAMDDATQGLASHQTTPKGKIKLTAPVMFGETFIMPIVHNFMHDHPDVEV 138

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+  D+     D AIRL   ++ SSL  R+L        A+P YL+   EP ++ 
Sbjct: 139 IANLSNEQEDLLEGGFDLAIRLGH-LKDSSLKARRLSDRRFIMCASPAYLRRFGEPHTLG 197

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  +       +  E+       +R         L  NS  +++     G GI  L
Sbjct: 198 ELHNHQCLVGNSSYWRVNEN-------EREKHIKIAGRLHCNSGWALVDGAKKGLGIVQL 250

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           PDY +    ++  LV ++         V+  YP        ++   +++    ++
Sbjct: 251 PDYYIDNELNSGELVPVLTSYQPKQEGVWGVYPPRQFVATNVRVLLDYLVAGLKE 305


>gi|238794799|ref|ZP_04638401.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238725879|gb|EEQ17431.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 302

 Score =  248 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 129/287 (44%), Gaps = 10/287 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA  GSFT AAE   L +SS+S++IS LE  +GI+L  R  R L LT  G 
Sbjct: 5   LQDMALFARVAECGSFTRAAEMAGLPKSSVSQRISQLEQNLGIRLLNRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ +
Sbjct: 65  RYLVHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLATDFQRQYPDVLL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++ +  +D+  +  D A+R  KP Q SSLI R+L     +  A+P YL         +
Sbjct: 125 EVLVSDTMVDLVEEGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLTHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD H  I         +   +       P           ++ L   +  + G GI LL
Sbjct: 184 QLDTHRCIAHRAWQALILRREDEFYRWQVPALHV------TDNLLYARECALAGGGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P ++ ++   N  LV ++         +Y  YP    N+  L  F +
Sbjct: 238 PAFLSREVVANRQLVEVLPQWQAEGNELYLVYPSRKLNSPALSCFID 284


>gi|184157737|ref|YP_001846076.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332876420|ref|ZP_08444189.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209331|gb|ACC56729.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322508044|gb|ADX03498.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323517630|gb|ADX92011.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735430|gb|EGJ66488.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 301

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 1   MS-FDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           MS FD +   +L +F  V   GSF+  A   +++ S++S+ IS LE  +G++L  R  R 
Sbjct: 1   MSYFDINRSGELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQ 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
             LT +G + +    ++ + L+  +  +  +   P G++RI T+     + L   +  F 
Sbjct: 61  FQLTSEGCQFYEQGIQILNDLDELEQSVTANH-IPKGRIRIHTSFSYWIHFLLPCISLFN 119

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP+I+++  L ++ I++     D AIR   P++SS+L+ R L + +     +P Y++ 
Sbjct: 120 QRYPEIELEAHLSDEVINLVEQRIDVAIRTG-PLKSSNLVARSLGSTYKQYVCSPLYIEK 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYC 235
              P    EL +H L+     +    ++  WL     + I       L+VN   +I+Q  
Sbjct: 179 YGCPEHPDELHEHQLL----DVSYQRQNKTWLFKKATQEISLTPSKVLKVNHGEAILQLA 234

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYP-EALKNTGKLKAFRNFI 290
           + G+GIA L ++ ++       LV+I+ED  I  S   +  +         +++ F +F+
Sbjct: 235 LAGAGIAQLNEFQIRNALQQKQLVKILEDWNIHASEEFHAVWIGHDKYVPNRVRTFLDFL 294

Query: 291 FLKA 294
              A
Sbjct: 295 VEHA 298


>gi|56478289|ref|YP_159878.1| LysR family transcriptional regulator [Aromatoleum aromaticum EbN1]
 gi|56314332|emb|CAI08977.1| Transcriptional regulatory protein,lysR family [Aromatoleum
           aromaticum EbN1]
          Length = 306

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 135/296 (45%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  VA +GSFT  A+ L++++S+I+RQ++GLE  +G KL  R  R L+LT 
Sbjct: 1   MDRLQAMDVFVRVAEAGSFTAVADYLNVARSAITRQVAGLEAHLGTKLLARSTRRLSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+       E+   +E  + +L      P G +RI+  +  G   L   + +F+  YP+
Sbjct: 61  SGAAYLEKCREILAMVEAAEGDLAGEKRAPRGPIRISVPMSFGIRHLVPLISDFITTYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L   ++ +++     D  +R+ + I   +L+ R+L T  +   AAP YL     P 
Sbjct: 121 VTVDLEFTDRRVNLIEGGLDFTVRISQHI-DPTLVIRRLSTSELTVVAAPAYLDRHGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  H+ +T+  L P     F            P    LQ+N+  ++++  + G GI
Sbjct: 180 HPDELLAHHCLTYT-LAPSSGWSFR---IDGEHRTVPVKGRLQMNNGDALLEAAIRGLGI 235

Query: 242 ALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              P ++         L  ++ D       VY  +P +     +++   +++  + 
Sbjct: 236 TNQPTFLSAQAVQAGLLEEVLADYSATELQVYAVFPGSRYVPHRVRVLVDYLAERL 291


>gi|119776681|ref|YP_929421.1| LyrR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119769181|gb|ABM01752.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 299

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 8/292 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GS T AAE L +S+S +S+ +  LE  +G +L +R  R ++LTE G + 
Sbjct: 8   RMLVFASVVEQGSLTMAAEVLGISRSMVSQHLKKLEERLGCELLHRTTRRISLTEDGREF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E+       +   + +     G LR+   + LG++ L   + +F   YP+I++ L
Sbjct: 68  FHYCGELLQLARQAEAVTRPADEHLHGSLRVTAPVGLGEHNLLPLIGDFHRRYPNIRLTL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L++  +++     D AI+   P + S     KL +      A+P Y+    +PL    L
Sbjct: 128 MLEDSKLNLLEHQIDVAIQAGWP-EDSEFRAIKLGSFDEQLVASPEYVAAHGKPLHPDNL 186

Query: 187 DKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H  +      +PK     N      R    P ISC   NS   ++   + G G+A+LP
Sbjct: 187 QHHQWLAHASGHLPKTWTLHNGQGEEFRVRITPFISC---NSTNGLIAMALQGLGVAILP 243

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           D +V ++     L  ++ D       VY  +P       +++ F +F+  + 
Sbjct: 244 DNLVNEHLASGALELLLPDYHLREGGVYALHPYKENTPPRVRVFLDFLKERL 295


>gi|152996308|ref|YP_001341143.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837232|gb|ABR71208.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 303

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 145/296 (48%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + +R F  VA + SFT AA+QL ++QS ISR ++ LE+++G++L +R+ R L LT
Sbjct: 5   MEYDLNAVRQFIKVAENLSFTVAAQQLDVTQSGISRAVNRLESQLGLRLLHRNTRNLKLT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G    +    +   LE    EL E  ++P G L+I+     G+ ++   + + L  YP
Sbjct: 65  VDGELFLKRVKPLVGGLEEAHQELLEYGLEPKGCLKISAPSAFGRAVVMPIIAKLLDEYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+L ++ +D+  +  D  IR    IQ S +I R L        A+P YL     P
Sbjct: 125 QLTIELVLTDRIVDLVGEGFDAVIRSGN-IQDSRVIARPLKAAGWVTVASPKYLNTYGSP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +++EL  HN +   +  P   + F W     +R    P    L V+    +++  +L  
Sbjct: 184 KTLEELPAHNCMQVRN--PVTGQLFPWTFRNNERDKDFPIRGSLVVDHGDPLVEAALLSI 241

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+A L  + V+D   +  L  ++ +    S  +   YP A   + KL  FR+ +  
Sbjct: 242 GMAQLMTFFVEDYLKDGLLTPVLNEYARSSTPLTLLYPSARHRSAKLMMFRDALLE 297


>gi|71736118|ref|YP_274829.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556671|gb|AAZ35882.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 305

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFAKAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMVVIPALPEFARRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 IRLEIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLQRYGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H +I +            ++A     + +     + VNS    +  C  G G+
Sbjct: 180 NLPDLAQHQVIEYFSTSTGKRYGLEFMAD-GVEVDQALACSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V        LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWLVE 292


>gi|239815506|ref|YP_002944416.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802083|gb|ACS19150.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 320

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 137/295 (46%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +RVF  V  SGS + AA++L LS+  ++R ++ LE   G +L +R  R L+LT 
Sbjct: 1   MDRLNAMRVFVTVVDSGSLSAAADKLDLSRPVVTRYVAELEQWTGARLLHRTTRRLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     +V       Q  +++ +  P G+LRI  +    Q  L   + +++ L+P 
Sbjct: 61  AGEELLPRCRQVLELAGDMQEAVRQPAEAPRGQLRITASTSFAQAQLADAVADYVRLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+L ++ +++  +  D AIR+   I   +LI R+L        A+P YLK   +PL
Sbjct: 121 VAVDLVLLDRAVNLVDERIDLAIRVAVEI-DPNLIARRLTDCRSVVCASPGYLKEHGQPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL + N +T      + + +F        P+       +  N   S+M     G+GI
Sbjct: 180 RVEELAQRNCLTHS-YFGRSLWNFT-RREDGTPVSVAVGGNVSTNDAASLMHLARAGAGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+LP Y+         LVR+  +       +Y  Y         L+   +F+  +
Sbjct: 238 AMLPTYLTAGLLQAGELVRLFPEFEPQVVGMYAVYASRKHMPATLRTMLDFLARR 292


>gi|170737242|ref|YP_001778502.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819430|gb|ACA94012.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 297

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 119/294 (40%), Gaps = 9/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V   G+FT AA +L +S   + + +  LE  +  +L  R  R  +LT+
Sbjct: 1   MDRLRAMETFVAVVEGGNFTEAARRLEISAVMVGKYVRELEERLAARLLERTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +         +   +  ++     PSG LRI+  I  G  ++      F   YP 
Sbjct: 61  AGRVFYDDAKRALEHMRIAETSVERLRASPSGTLRISAPITFGACVIAPLAATFRQRYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+++D+  +  D AIR+ + +  + L+ R L    M   A+P YL     P 
Sbjct: 121 VRVELELSNRNVDLIDEGFDLAIRIGE-LGDADLVARPLTRYRMVICASPGYLAQYGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L  H+ +       +      W    D        S    N    +    + G+G+
Sbjct: 180 TPQDLSAHHCLFHSVWSSRN----GWKLGDDDSTHFSAESGFTCNDGNGLRMAAIAGAGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            L P+ +V  +     LV++++        V+  Y +  +   KL  F   +  
Sbjct: 236 LLQPEVLVSHDLASGALVQVLQGYEPKPHPVHIVYRQDRRPLPKLTRFVAHLLE 289


>gi|298485382|ref|ZP_07003472.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160080|gb|EFI01111.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 298

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 143/301 (47%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGS + AAE++  + S +SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  ++E+ +  L  S   P+G+LRI        + +  ++ EF   YP
Sbjct: 61  EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  ID+     D AIR+   +  S+L  R L +  ++  A+P YL+    P
Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRIGA-LPDSTLHARSLGSCPLNIVASPAYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L +H L+ F  +           A  DR   +P IS    +S  ++    + G G
Sbjct: 180 KTAEDLAQHVLVGFTHVESLNQWPLRH-AEGDRLSIKPAISA---SSGDTLRYLVLEGVG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L D++  D+     LV +++   +     ++  Y    +   +++ F +F+  K   
Sbjct: 236 IACLSDFMTNDDLREGRLVCLLKGANSGYRQPIHAVYYRNSRLALRIQCFLDFMQEKLAG 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|258623586|ref|ZP_05718581.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258584132|gb|EEW08886.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 300

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 138/292 (47%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ GSFT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGSFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L   +  +D+  +  D A R+ K ++ +S I RKL  + M   A P YLK C +P
Sbjct: 125 EVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFIARKLTDVAMSTLATPAYLKQCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLAEHRCLT-GSVKRWSYQHNTTQQTID----VPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +  ++      LV +  D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCQEEIARGALVEVFPDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|163800170|ref|ZP_02194071.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
 gi|159175613|gb|EDP60407.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
          Length = 299

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 123/291 (42%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE+ +L+ S +S++I+ LE E+  +L YR  R LTLTE G  
Sbjct: 4   DDLILFSQVVELGSFSRVAEENNLTNSVVSKRIARLEEEIDAQLLYRTTRRLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  ++P + + 
Sbjct: 64  LLHSAKNVKQATQEAMSAVSGFGENVSGHIKMSVPTISGDLILANAVAEFCNMHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +D+     D  IR    ++ SSLI R ++       A+P Y+    +     +
Sbjct: 124 MSLDNRFVDLVAGGFDLVIRTGY-LEDSSLIARHILDSQWVVCASPSYIVKNGKLTEPTD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + +        +        D             ++  ++ +  + G GIA +P
Sbjct: 183 LISHNCLQYAYQTTGATDW--QFKGKDGDYIVKVSGSFSTDNATALRKAALGGHGIAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV I  +++     VY  YP   +   K+K     I  +
Sbjct: 241 RCLVYHDIRSGELVDIFPELVGKKLGVYAVYPFTRQPPNKVKLLIEHIREQ 291


>gi|319780389|ref|YP_004139865.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166277|gb|ADV09815.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 297

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D ++L  F  VA   SFT AA +L ++QS++S +I  LE ++GI+L  R  R +  T  G
Sbjct: 5   DLNQLTWFQAVAEERSFTKAAAKLGVAQSTLSHRIKQLEAQMGIRLLTRTTRNVATTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    ++E     L     KPSG +R+  +    ++++   LK  L  YPDI 
Sbjct: 65  ERLLQTIAPRIGEIEDEIAALMAFREKPSGSIRLTLSDHALESVVWPKLKPILSAYPDIG 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LILD+   +I  +  D  +RL + ++   +  R      + A A+P Y      P   
Sbjct: 125 VELILDSTFRNIVEEGFDAGVRLGESVEKDMIAVRIGPDWRLVAVASPDYFAARGVPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L +H  I         +  + W    D      R++  L  N+  +++   V G GIA
Sbjct: 185 QDLIRHVCINMRHETAGGL--YAWEFEKDGQALRVRVNGQLTFNNSYAMIDAAVHGYGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+ IV+ +     LV++++D        +  YP   +N    K   + +  +
Sbjct: 243 YVPENIVEQHIASGLLVQVLDDWSPFFDGYFLYYPSRRQNLPAFKVIVDALRHR 296


>gi|227820652|ref|YP_002824622.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
 gi|227339651|gb|ACP23869.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
          Length = 303

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +G+FT A+  L++ +++++  I GLE  +  KL  R  R + +T 
Sbjct: 1   MDQLTAMRVFLRVVETGNFTRASVSLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   + +   ++     L  +   P G+LR+ T       ++   L EF   YPD
Sbjct: 61  DGALYYERAARLLSDIDELDGSLSSAQSLPKGRLRVETASAFANLIIIPALPEFQAKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ ID   +  DCAIR    +   SLI R++  +     A+  +L+    P 
Sbjct: 121 IQIDLGVSDRTIDYLAENVDCAIR-GGTLTDQSLIARRITEMKFITCASRDFLERHPMPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
              +L+K N    G  +PK  +   +         E      +  N   + +     G G
Sbjct: 180 HPSDLEK-NTHAVGYFLPKSGQQMRFQFRRGNEEIEIDSRYAVAANEATTYVAAARAGMG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +   P ++V+D+     +V ++ D       VY  YP     + +L+ F +++ 
Sbjct: 239 VIQAPFFMVRDDLRAGTMVPVLPDWQVDPMPVYLVYPPNRHLSSRLRVFADWVV 292


>gi|90409019|ref|ZP_01217148.1| transcriptional regulator, LysR family protein [Psychromonas sp.
           CNPT3]
 gi|90309877|gb|EAS38033.1| transcriptional regulator, LysR family protein [Psychromonas sp.
           CNPT3]
          Length = 288

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 147/292 (50%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  V+ + SFT AA ++ +S + +SRQ+S LE  + IKLFYR  R ++LT++
Sbjct: 1   MKWEGINEFVYVSETESFTKAARRMSISTAQVSRQVSALENRLNIKLFYRTTRKISLTQE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + + LE  +  +     +P G +++   +  G+  +   + +F+LLYPDI
Sbjct: 61  GHIFYQHCRLLLNGLEDAKRAISNLQDRPRGMIKLTAPVSYGEQQILPLVNDFMLLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++   L N+ +D+  D  D AIR+ K +  S+++ +KL     +  A+P YL+    PLS
Sbjct: 121 EVFAYLGNQQVDLVGDGYDLAIRIGK-LSDSTMMAKKLSVRSNYVCASPFYLEKYGTPLS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + +L++HN +             +W    +    + R+   L+ NS   +    +   GI
Sbjct: 180 LLDLNQHNCLM--------GVLDHWHFKENGIEKKIRVKGNLRYNSGWGLADAALKSQGI 231

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LPD  V+   D+  L+ I+E    P  +++  YP       K++   +F+
Sbjct: 232 VQLPDCYVQKHLDSGTLMSILEHCQEPDESIWAVYPHNRHLCSKIRLLVDFL 283


>gi|134291266|ref|YP_001115035.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134455|gb|ABO58780.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 313

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 9/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + V   +  +GSF  A E L +SQS +SR I+ LE  +G++L  R  R +TLT++G 
Sbjct: 9   LNGMGVLAAIVDTGSFAGAGEILDMSQSGVSRAIARLEGRLGVRLLERTTRSVTLTDEGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +   LE       + +    G+LR+       + +L   L  F+  YP++++
Sbjct: 69  RFYEQVMPLLGALEEATTHATQGATAVRGRLRVNVDPFFSRFVLGPQLGSFIEEYPELRV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  ++  D+  D  + A+R   P Q S+L+ RKL+   +   AAP YLK    PL   
Sbjct: 129 ELVTRDQLGDMIADGFELAVRFGHP-QPSTLVARKLLETRILTVAAPSYLKRHGRPLQPA 187

Query: 185 ELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            L++  H  I + D  P     F+W     R      +   L VN   ++   C+ G  I
Sbjct: 188 GLERDTHACIRYRD--PATGHPFDWEFHRGRKKLVVDVAGRLTVNDVGTMHSVCLAGHAI 245

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A + +  V+    +  LV +  D     F +Y  YP       K++AF +FI 
Sbjct: 246 AQVMELGVEAPLADGRLVDLFPDWPDDRFPLYALYPSRRYVPAKVRAFLDFIV 298


>gi|220922929|ref|YP_002498231.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219947536|gb|ACL57928.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 306

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 138/300 (46%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  V  +G F+ AA +L++S + +S+ +  LE  +G +L  R  R ++LTE
Sbjct: 1   MDRLTSLTVFGRVVEAGGFSAAARRLNMSVTMVSKHVQALEDRLGARLLNRTTRKVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +S++  +L+            P G+LR+ T   +    +   L+E+L  YP 
Sbjct: 61  VGQAYYERSSQILAELDEADRIASALHATPRGRLRLHTAGHI-SRFMAPVLREYLARYPA 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L + ++ +D+  D  D AIR   P   S LI R+L         AP+YL     P 
Sbjct: 120 VTVDLTVGDRMVDLIEDGYDLAIRTTPP-PDSGLIVRRLTPWRHVLTCAPNYLDAHPAPF 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  HN + +        +++++ ++   P        +  NS   +    + GSG+
Sbjct: 179 QPGDLAHHNCLRYA--FYPYGDEWHFESSDGGPTAVKVTGNMVSNSADLLRLLALDGSGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            L P ++V ++    +LVR++ +     F +   YP     + K+++F + +  +  + +
Sbjct: 237 FLAPTFLVGEDVEAGSLVRLLPEYKPVEFAINAIYPHRRHLSTKVRSFLDLLSERFAEHR 296


>gi|307129017|ref|YP_003881033.1| hypothetical protein Dda3937_01584 [Dickeya dadantii 3937]
 gi|306526546|gb|ADM96476.1| Hypothetical transcriptional regulator ycjZ [Dickeya dadantii 3937]
          Length = 297

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F +VA+  SFT AA +L +SQS++S  +  LE  +GI+L  R  R ++LTE G
Sbjct: 5   NFSDLISFRMVAQEKSFTRAAAKLGISQSALSHAMRSLEERLGIRLLTRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S   ++LE    +L E   KP+G +R+         +L   LK FL  +PDI 
Sbjct: 65  ERLLGNISPSLNELEFALEDLGEMRDKPAGNIRLTAGEHAVNFVLWPVLKPFLSQHPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI  +  D  +RL + +    +  R    + M    +P Y  N   P + 
Sbjct: 125 LEITVDNTLTDIVNERFDAGVRLGEQVAKDMIAVRIGPDMRMAVVGSPAYFANHTAPDTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q L +H  I     +P     F W  + D      R+   L  N+    +   + G G+A
Sbjct: 185 QSLQQHRCINM--RLPTLGGLFAWEFSRDGREIRVRVDGQLTFNNLQHRIDAALSGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  ++    +  L++++E    P    Y  YP   ++T     F + +
Sbjct: 243 YVPEDTIRQAVADGRLIQVLESWCEPFPGYYLYYPSRKQHTAAFSLFIDAL 293


>gi|167565553|ref|ZP_02358469.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 299

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFMEQWSGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    +     + +    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLADHVATVVADPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAV-DPSLIARRLGTCRSVLCASPGYLAEHGAPTRPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++  + G G+ALLP 
Sbjct: 185 ARHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAAIAGGGVALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      LVR++ D   P   +Y  Y    +    ++   +F+  +  D
Sbjct: 241 FAAAEPIRAGALVRVLADCTAPELGIYAVYASRKQMPLAMRTMIDFLAERFGD 293


>gi|304391206|ref|ZP_07373150.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
 gi|303296562|gb|EFL90918.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
          Length = 296

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 10/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D L  F  V R GSF  AA + ++  SS+SRQI+ LE E+G +LF R  R L+ TE 
Sbjct: 1   MDIDVLHTFIDVFRHGSFASAARERNVDPSSVSRQIAVLEDELGYRLFERTTRRLSATEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   H   +    +L   +    +    P G+LR+  ++  G+  L   +  F  +YP++
Sbjct: 61  GRVYHDRIAGFIDELTLAREAGADVLGAPKGQLRVTASVAFGERWLIPRIATFQTIYPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ LIL +  +DI+ +  D  IRL   + S SL+  +L+       AAP Y+    +P+S
Sbjct: 121 ELDLILSDAVVDIAAEGIDLGIRLGTRM-SGSLVATRLLQTRYRVVAAPDYIAQHGQPVS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  HN + F   +P     + + +             L +++ L++ +  + G GIA
Sbjct: 180 PVNLGDHNCLVF--RLPGYRSHWRFRSGAGDITEVEVRGTLSISNALALRRATLDGFGIA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFL 292
           LL D+ V  +     L+ +    +T +       +  YP       K +AF + +  
Sbjct: 238 LLADWTVDADIEAGALIDLFPAFVTSAADFDTAAWIVYPSRAYVPHKTRAFIDHLKA 294


>gi|294011967|ref|YP_003545427.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292675297|dbj|BAI96815.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 299

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 134/292 (45%), Gaps = 8/292 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D    + VF  V  +GSF+ AA  L + Q ++S+ ++ LE  + ++L  R  R L  T
Sbjct: 4   QMDRLHTMEVFVRVVETGSFSAAARDLRIGQPAVSKLVAALEDRLQVRLLVRSTRQLHPT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +        + +  +   +       G+LR+  ++   +  +   +  FL  +P
Sbjct: 64  EAGQAFYERARRTLAEADEAETAARGLGKGLDGRLRVCASVTFARLHIVPRIGAFLDAHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++  ++D++ ID+  +  D A+R  + +  SSL  RKL T   +  A+P YL     P
Sbjct: 124 NLRVDFVMDDRYIDLLGENIDVALRAGE-LPDSSLTTRKLATCDRYVVASPAYLTRMGTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  I +   +      F   AT D  +  P  + L  ++   + +  + G G
Sbjct: 183 SAPSDLLDHTAIVYTQGLVAEEWRFR-RATADTSVRIP--TRLSFSAAEGVREAVIAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +A+   ++++    + ++V ++ D   PS  ++  YP     T K +AF N+
Sbjct: 240 LAISSRWMMEPELASGSVVPVLTDWKLPSADLWALYPSGRLPTAKARAFVNW 291


>gi|150397971|ref|YP_001328438.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029486|gb|ABR61603.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 304

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G  L  R  R  +LTE
Sbjct: 8   MDTLTRIRAFIDVVDAEGFSAAARRIGKSKALLSKYVRELEDELGALLLNRTTRQFSLTE 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  SE+  +++     ++ S+    G+LRI          +  +L +F   +P+
Sbjct: 68  AGHTYYRSASEILKEIDNLADLVRASNSDLKGRLRITVPRTFVDADIGQSLIDFGKEHPE 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++ D++ +D+  +  D AIR+ + ++ S+LI RKL    +   A+P ++      +
Sbjct: 128 LSLEIVSDDRFVDLVEESFDVAIRITR-LEDSTLIARKLDDFQVLVCASPDFISRADPLI 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL K   I   D   +    + ++     P        ++VNS L   +  V G G+
Sbjct: 187 HPSELSKLPCIL--DTNGRSYSSWRFVEKDGSPFTVSVSGQIEVNSPLGAARAAVTGIGV 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LPD+I +    +  LV + +D +     +Y  YP       K++ F +F+
Sbjct: 245 AVLPDFIARPKIASGELVTLFDDFLPKDRGIYAIYPHRRYLPTKVRTFVDFL 296


>gi|254249771|ref|ZP_04943091.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124876272|gb|EAY66262.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 297

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 9/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V   G+FT AA +L +S   + + +  LE  +  +L  R  R   LT+
Sbjct: 1   MDRLRAMETFVAVVEGGNFTEAARRLEISAVMVGKYVRELEERLAARLLERTTRRQNLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +         +   +  ++     PSG LRI+  I  G  ++      F   YP 
Sbjct: 61  AGRVFYEDAKRALEHMRIAETSVERLRASPSGTLRISAPITFGACVIAPLAATFRQRYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+++D+  +  D AIR+ + +  + L+ R L    M   A+P YL     P 
Sbjct: 121 VRVELELSNRNVDLIDEGFDLAIRIGE-LGDADLVARPLTGYRMVICASPGYLAQYGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L  H+ +       +      W    D        S    N    +    + G+G+
Sbjct: 180 TPQDLSAHHCLFHTVWNSRN----GWKLGDDDGTHFSAESGFTCNDGNGLRMAAIAGAGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            L P+ +V  +     LV++++        V+  Y +  +   KL  F   +  
Sbjct: 236 LLQPEVLVSHDLASGALVQVLQGYEPKPHPVHIVYRQDRRPLPKLTRFVAHLLE 289


>gi|221196142|ref|ZP_03569189.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
 gi|221202816|ref|ZP_03575835.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221176750|gb|EEE09178.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221182696|gb|EEE15096.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
          Length = 303

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 131/299 (43%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT 
Sbjct: 1   MDHLQAMRIFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   L+  +   +E+   P G +R+        + +   L +F   YPD
Sbjct: 61  EGTTYYERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHRVIPALPDFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+  Y      P 
Sbjct: 121 LRVVVSTTDRFVDLVADGIDCAVRVGM-LSDTSLVARRIGEMAQLNCASRDYAARHGLPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  EL  H  + +         D+ +       +   ++ S + VNS  + +  CV G G
Sbjct: 180 TPDELPDHVAVGYFSSRTGRELDWEYTDMDTGDVHTVKMRSIVSVNSSQAYLACCVAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   P   ++    +  LV ++ +   P   V   +P       +++ F +++     D
Sbjct: 240 MIQAPRDGLEPLLADGTLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWLAETLGD 298


>gi|332529727|ref|ZP_08405681.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040748|gb|EGI77120.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 304

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 139/298 (46%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  +GSF+  A +   +Q ++++ ++ LE  + ++L  R+ RG+++TE
Sbjct: 1   MDRLHAMQVFVRVVETGSFSKTAREFATTQPTVTKLVAALEESLRVRLLNRNTRGISVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +    E     ++    +  G LRI T++  G+ ++     +F+  +P 
Sbjct: 61  SGALYYEKCKNIVRDAEEADNSVRLQQTQAQGLLRIGTSVAFGRRVITPLALDFMAKHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L  +++  D+     D A+R+ K +  S+L  R L T      A+P YL+    P 
Sbjct: 121 VQLDLSFEDRYTDLVAQGIDVAVRMGK-LADSTLGARFLTTNPWVLVASPKYLRKQGMPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL +H  + +  ++   +      +     +  P    L+ N+  +++     G GI
Sbjct: 180 KASELSEHPALIYSSVLGDDVWRMT--SPKGEAVTVPVAGRLRSNNLSAVLAAARNGYGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A +P Y+  +   + ++V +++  + P   ++  +P      GK+ AF  ++  +  D
Sbjct: 238 AAMPRYVASESLKSGHVVEVLQGHVLPEQEIHAVFPSPKLVPGKVMAFIAYLQSRLGD 295


>gi|254505376|ref|ZP_05117523.1| transcriptional regulator [Vibrio parahaemolyticus 16]
 gi|219551493|gb|EED28471.1| transcriptional regulator [Vibrio parahaemolyticus 16]
          Length = 304

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 133/296 (44%), Gaps = 12/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +RVF  V  SGSF+ AA  L ++ SS++R I  LE ++   LF R  R L LT++G 
Sbjct: 2   FELIRVFNQVVESGSFSQAANALSMAPSSVARNIDNLEAKLQTTLFKRSTRQLVLTDEGR 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H     +  + +    ++++S  +P G LRI+     G   L   +  FL  YP +QI
Sbjct: 62  YFHHQALSLVEEADALVNQMKQSPSQPQGLLRISAFESFGNVFLAPLIPRFLAQYPKVQI 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L LDN  +D++ D  D AIR+  P + S L  RKL+T      A+P YLK         
Sbjct: 122 ELELDNHVVDLNSDNIDLAIRIGTP-KDSRLKARKLLTNRTVLVASPQYLKANPAITEPN 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN +       KC     + +  +                  I+Q  + GSG+ LL
Sbjct: 181 DLSGHNCLLISQQRQKCHW---YFSRENERHKVQVTGNFSSRGGSPILQGALHGSGVLLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAFRNFIFL 292
            D++V        L  I+ +         S  +Y  Y  +      ++AF +FI  
Sbjct: 238 SDWMVAPYLKQGTLTNILPEWQVSYGEKRSDEIYALYKPSHYPKPHIRAFIDFIVQ 293


>gi|189351988|ref|YP_001947615.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221210527|ref|ZP_03583507.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|189336010|dbj|BAG45079.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221169483|gb|EEE01950.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 307

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 142/294 (48%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF +V R  SF+ AAEQL +S + +S++I+ LET++G +L +R  R +T+TE G
Sbjct: 6   NLEDLRVFSLVVRLASFSAAAEQLAVSPAYVSKRIAMLETQLGTRLLHRSTRRVTVTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G++++   L +F   YP + 
Sbjct: 66  ERVFAHAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVVAPALLDFSARYPQLN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I    LI R+L   +    A+P YL     P ++
Sbjct: 126 VRLDLFDRLVDVAAEGYDLDVRIGDEIAD-HLIARRLAANYRVLCASPDYLARRGMPRTL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ +   +           L      +       L  N     +Q+ + G GI L
Sbjct: 185 ADLASHDCLAIKERDHPFGVWR--LNVRGDTVTVKVGGALSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              +      D+  L R++ D + P+  ++  Y E +  + K++   +F+    
Sbjct: 243 RSIWEAGPLIDSGALCRVLPDAVQPA-NIWAVYTERVAASAKVRVCVDFLAQAL 295


>gi|320324654|gb|EFW80728.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320328764|gb|EFW84763.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330881993|gb|EGH16142.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 298

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + VF +VA + SFT A ++L +S S + + I  LE  +G++LF+R  R + +T +G
Sbjct: 3   SLGSIAVFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEEGLGVRLFHRSTRSIAMTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +LET ++EL  +   P G+LRI+    L   L+   + EF+  YPDI+
Sbjct: 63  SIFLERCRRILSELETAEMELSNARDLPRGRLRISLP--LVSGLVMPVIIEFMRTYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R   P   S L+ R++    +    AP Y      P   
Sbjct: 121 LDIDFSDRMVDIIEEGFDIVLRTGDPG-DSGLMSRRMGGFQLKIVGAPDYFFRRGTPQHP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +          E +           +     +  N+   ++     G GIA 
Sbjct: 180 ADLSRHACLLHKFPSSGKFEHWPLRREAGADDLD-LPQVMVCNTTEILVDVARAGLGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD+++     +  LV I+ D    + +    +P +   + +L+ F +F+  
Sbjct: 239 LPDFMISSAIRSGELVPILTDYTVHTGSFRLLWPSSKHLSLRLRVFIDFMHA 290


>gi|293395490|ref|ZP_06639774.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422174|gb|EFE95419.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 310

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 134/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +  F  V   GS + AA  L LSQ ++S+QI  LE ++G  L +R  R +T TE
Sbjct: 1   MDKLNAMYTFVRVVELGSLSAAARSLQLSQPAVSQQIVSLEQQLGTLLLFRTTRSVTATE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + ++    +   +   +  L   S +  G LR+      GQ  +      F  L+P+
Sbjct: 61  AGQRYYQQIKPILAAVVEVEDALHGLSQRLQGNLRVHAPSGFGQAHIAPLAVAFQQLHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L+LD++  D+S +  D AIR  + + +   + R+L ++     AAP YL     P 
Sbjct: 121 LRIELLLDDRLADVSAEGIDVAIRFGE-LHAPGTVARRLGSMQRMLVAAPRYLATQGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL +H  + F       ++D   L         P     + N+  +++     G GI
Sbjct: 180 SPQELSQHPHVRFSGA---AIDDTLTLIGPQGATLIPLRPVFRANNSFALLAALEGGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 ++       +LVR++E+   P   ++  YP A     K++A+ +++
Sbjct: 237 GGAQRPLIGRQLAQGSLVRVLEEYHYPPMALHAVYPAARFIPAKVRAWVDYL 288


>gi|330939108|gb|EGH42539.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 298

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + VF +VA + SFT A ++L +S S I + I  LE  +G++LF+R  R + LT +G
Sbjct: 3   SLGSIAVFVLVAETRSFTQAGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +LE  ++EL  +   P G+LRI+    L   L+   + +F+  YPDI+
Sbjct: 63  SIFLERCRRILSELEAAEMELSNARDLPKGRLRISLP--LVSGLVMPVIIDFMRTYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P   
Sbjct: 121 LDIDFSDRMVDIIEEGFDIVLRTGDPG-DSGLMSKRMGSFQLRIVGAPDYFARHAIPRHP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +          E +           E     +  N+   ++     G GIA 
Sbjct: 180 GDLSQHACLLHKFPSTGRFEHWPPGREAGVDDLE-LPQAMVCNTTEILVDVARAGLGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD+++     N  L+ +++D    + T    +P +   + +L+ F +F+  
Sbjct: 239 LPDFMISSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFMHA 290


>gi|146306147|ref|YP_001186612.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574348|gb|ABP83880.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 318

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 127/294 (43%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V   GSFT AA+ L LS + +SR I+ LE  +  +L  R  R L LTE G
Sbjct: 3   TLHGMRVFVQVVERGSFTAAAQALDLSTAQVSRLIADLEQHLEARLLQRTTRRLALTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++  ++E    E + +   PSG+LR+ T   LG   +   +  +   YP + 
Sbjct: 63  ERYLERCRQILGQIEEADAEARGAHRTPSGRLRVHTMTGLGLQHITPLIARYAERYPQVV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L  +  D+  D  D  I   + +  S L+ ++L  ++    AAP YL     P   
Sbjct: 123 VELTLAQRTPDLLEDGHDVTIAFARDLPDSQLVAQRLGPVYSVLCAAPSYLAGHGVPQRP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +   D + +   DF      D  +      C QVN   ++++    G G  L
Sbjct: 183 SDLQQHRYLRLTDPLYRGQWDFG-----DEQLDALPAECFQVNVAEALVKAAQAGMGFCL 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP ++         L+RI+      +  +Y  YP       K + +  F+  + 
Sbjct: 238 LPSFVASQPLREGRLLRILPQHRLRALNIYAMYPSRRLLDAKTRTWVEFLKAEL 291


>gi|300717146|ref|YP_003741949.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661]
 gi|299062982|emb|CAX60102.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661]
          Length = 297

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 127/283 (44%), Gaps = 6/283 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L    +V++  SFT AA +L +SQS++S  I GLE  +  +L  R  R +  TE G
Sbjct: 5   NFNDLIYLVMVSKEKSFTRAAAKLGVSQSALSHSIRGLEERLQTRLLTRTTRSVAATEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +   +E   + + ++    SG +RI        + L   LK FL  YP+++
Sbjct: 65  ERLIDSVGPLIADIEKALLHITDNVGSVSGNIRITAGEHALSSTLWPLLKPFLQAYPEVK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +DN   DI     D  +RL + I+   +  R      M   A+P YL     P + 
Sbjct: 125 VELSVDNTLTDIVSGRFDAGVRLGESIEKDMVAVRIGPNWRMAVVASPDYLAKYGRPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  HN +     +P     ++W  + D      ++   L  N+  S +   + G GIA
Sbjct: 185 YQLQDHNCMNM--RLPTLGGLYSWEFSKDGKEIRVKVEGQLIFNNLASRIDAALSGMGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
            +P+  V+ +     L  ++++   P    Y  YP   ++T  
Sbjct: 243 CVPEDTVQHHINEGRLESLLDEWCEPFSGYYLYYPSRKQHTAA 285


>gi|293608457|ref|ZP_06690760.1| transcriptional regulator [Acinetobacter sp. SH024]
 gi|292829030|gb|EFF87392.1| transcriptional regulator [Acinetobacter sp. SH024]
          Length = 313

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+
Sbjct: 10  LHAMHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGA 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ +
Sbjct: 70  TYAERCRQVISMVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +        D+     D ++ L + +  S  + R++ TI     A+P YL+    P S +
Sbjct: 130 EYTTSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGMPKSPE 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +    + P    D++ L T            L  ++   ++       GIALL
Sbjct: 190 DLKDHACLRL--VNPSITPDWHLLNTSGESYQIDIGGQLIADNPELLLDVVQQDMGIALL 247

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +   D   N  L  I+ +  +P   VY   P       K +A+ +++
Sbjct: 248 PMFSALDAVQNGRLCHILPEWRSPDIGVYTLLPSRHFIDAKTRAWLDWV 296


>gi|239992908|ref|ZP_04713432.1| putative transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 292

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 138/293 (47%), Gaps = 12/293 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +  + +  F  VA  G+FT AA +L  S + ISR+++ LE ++G+KL  R  R ++LT
Sbjct: 1   MKY-LEGIAEFCAVADVGNFTGAANKLDTSVAQISRKVASLEKQLGVKLLQRTTRSVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++  +        LE  Q+ +      P G +++   +  G+  +   L  F+  Y 
Sbjct: 60  EAGTQYFQQAMPALKALEDAQLAVSALQASPQGLIKLTAPVAFGEAFIAPLLNTFMQKYA 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +Q    N+ +DI     D AIR+ K ++ S+L+ +KL T H+    +  Y K   +P
Sbjct: 120 GISVQCTFSNEKLDIVELGLDLAIRIGK-LEDSTLVAKKLATRHLFVCGSRDYFKEQGQP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI+EL +H+L+       + + D       ++    P    ++ NS  ++    V G G
Sbjct: 179 KSIEELKEHSLLVGSQPYWRLLID-------NKIQSIPVQGRVRYNSGNALCSAAVAGLG 231

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP + V+    +  L+ +  +       ++  +P       K++   +F+
Sbjct: 232 IAQLPGFYVRKALASGQLIELFPEYKDKQEAIWAVFPSNRNVAPKIRLLVDFL 284


>gi|237812011|ref|YP_002896462.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|237505854|gb|ACQ98172.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 333

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 37  DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 96

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 97  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 156

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 157 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 215

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W     RP      +    N   +     + G+GIAL
Sbjct: 216 ADLCAHRCIVLGEQPR-----VEWRFDGPRPAAVEVSAAFLTNDGGAARTLALEGAGIAL 270

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W++
Sbjct: 271 KSIWDVGPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 330


>gi|52425152|ref|YP_088289.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307204|gb|AAU37704.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 297

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 132/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + VF  +  S SFT AA   ++S +  S+ ++ LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISVFCRIIESQSFTQAAALENISVAMASKLVAQLEEHLKTRLLQRTTRKIVPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  +L+     + + S    G L ++  +D G   +   L  F+   P+
Sbjct: 61  AGLVYYQRCQPILLELKEADSSISDLSTSLQGNLVVSVPMDFGLKFITPTLPAFISANPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++   ++ +D+  +  D A+R+   +Q S+L+ +KL T  MH  A+  YL+    P 
Sbjct: 121 LHVEMEFSDRRVDLMAEGYDLALRIGS-LQDSTLVAKKLATTSMHFAASAEYLRRYGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + +  +  +   +F   A   +       S +  N+ L+++Q      GI
Sbjct: 180 KPEDLQYHQCLLYKAIGNQIYWEF---ANKGKIQRVKMRSKMVCNNGLTLVQLAKADLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P ++V++   +  L+ ++ +       ++  YP       K+KAF  F+
Sbjct: 237 INSPRFLVEEELASGELIEVLPEFKQQLLDIHAVYPHRRHLAAKVKAFVEFL 288


>gi|294665290|ref|ZP_06730583.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604926|gb|EFF48284.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 304

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 133/294 (45%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + +F  V   GS T  A  L LS +  S+++  LE E+G++L +R  R L  T +G 
Sbjct: 4   LDDIALFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTAEGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +   L+    +L+ES+    G LR+  +   G+  +   L EF   +P ++I
Sbjct: 64  RLAERGRVLVEDLDALAEDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPRLRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L +  +D+     D AIR+  P++ S L+ R++        A+P YL+    P +  
Sbjct: 124 SAHLSDDLVDLVKQGFDLAIRIG-PLEDSGLVARRIADNRRTLAASPAYLQRHGTPRTPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  +    +     +D   L T D  +   R+ S  + N    +    V G GIA+
Sbjct: 183 ELAQHAGVLL--MGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAV 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + + D   +  LV++M D   P+  +    P       +++AF +F+  + 
Sbjct: 241 HSYWHIADELRSGRLVQVMPDYPPPASQISAVMPARRLQPPRVRAFVDFLQERL 294


>gi|288960625|ref|YP_003450965.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912933|dbj|BAI74421.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 309

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 131/301 (43%), Gaps = 7/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +L VF  +A   + + AA+ L +S S +SR ++ LE  +G++L  R  R L LT 
Sbjct: 1   MDRFTELEVFTKIAEEANLSRAADALGISVSGVSRHLASLENRLGVRLVQRTTRQLYLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        E+   +   +  +     +P G LRI  ++  G   L   ++EF   +P 
Sbjct: 61  EGESFAANAREILSTMREAEASVSMVVAQPRGTLRIGASLSFGLLHLMPVIREFRARHPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI L + N+  D+     D AIR R+    SS+  RKL        A+P YL+    P 
Sbjct: 121 VQIDLKISNRYQDLVESGLDIAIRTRRVEMDSSVTIRKLAETRRLIAASPDYLRERGMPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L KH+L+ +         D   LA     +  P    +  N    + Q  + GSGI
Sbjct: 181 EPKDLSKHDLLLYSLADDP---DHLSLARNGELVRIPLTGQMICNDGQILRQAALDGSGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + P YIV  +     LVR++ D   P  T+   +P       + + F N +        
Sbjct: 238 IIQPAYIVHADIKAGRLVRVLPDWELPRLTMNLAFPSRTHLPARTRLFINALVEHFARHD 297

Query: 299 F 299
           F
Sbjct: 298 F 298


>gi|298293129|ref|YP_003695068.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929640|gb|ADH90449.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 299

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 142/294 (48%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++V       GSF+ A  +L LS S++S+ ++ LE  +G +L  R  R + LT +G   
Sbjct: 7   EMQVLIEAVDRGSFSAAGRRLGLSPSAVSKLVTRLEERLGTRLLVRSTRAIMLTAEGEAY 66

Query: 67  HRVTSEVYHKLETTQIEL-QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +  +++  +  +   ++  P G+LR+++T+  G+  +   + EFL LYP++Q+ 
Sbjct: 67  VARARRILGEIDEAERFIAAGAAAAPRGRLRVSSTVGFGERCVVPRVPEFLALYPEVQLD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ID+  + AD  +R   P++ SSL  RK++       A+P YL     P + Q+
Sbjct: 127 LSLTDEVIDLVAERADIGLRAG-PMRDSSLKARKMLESRRVIVASPAYLARHGRPHTPQD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN + F     +  +D+ ++          P    L+ NS   + +  + G GIA +
Sbjct: 186 LAGHNCLRFN--FRRSQDDWPFVDPASGEGYALPVSGNLEGNSGSMVQRLALDGLGIARI 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKA 294
             Y+ + +     LV ++E+        V+  +        +++AF +F+  K 
Sbjct: 244 ARYVAERDIGAGTLVEVLEEYNGGDIERVHAVFVGHDYLAARIRAFVDFLAEKV 297


>gi|157371963|ref|YP_001479952.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323727|gb|ABV42824.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 297

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 137/291 (47%), Gaps = 8/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R+F  V    SFT AA+ L L +S+++  I  LE  + ++L  R  R ++ T 
Sbjct: 1   MDRIDAMRLFTRVVEQRSFTQAAQDLALPRSTVTDAIKQLEARLQVRLLQRTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +E  ++    +  KP G LRI     L ++ L   L +FL  YPD
Sbjct: 61  DGEAYYQRCLTILADIEDAEMAFAGA--KPRGLLRIDVHGTLARHFLLPGLPDFLAQYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D   +  DC IR+ K ++ S ++ R+L  +     AAP YL+    PL
Sbjct: 119 IELFMSEGDRLVDPVREGIDCVIRVGK-LKDSDMVARRLGELEEVTCAAPDYLQRFGTPL 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I EL+ H ++ F       +          RP        + V++  S++    +G GI
Sbjct: 178 GIDELEGHRMVGFRSSASGSIMPLE-FNVAGRPQQLILPCTVSVSAAESLVAAARMGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +P Y ++D+    +L+ ++    +    V   YP + + + +++ F ++
Sbjct: 237 IQVPRYHLRDDLASGSLLPLLPQFPSTPMPVSLLYPRSRQLSPRVRVFIDW 287


>gi|71908713|ref|YP_286300.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB]
 gi|71848334|gb|AAZ47830.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 300

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 127/294 (43%), Gaps = 9/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F   A  GS + AA    ++ + I R++  LET +G+KL  R  R LT+T 
Sbjct: 1   MDRLKQIEAFVSAATRGSLSAAARVEGVTPAIIGRRLDALETRLGVKLLLRTTRKLTITF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +  + L   +  +   SV+ SG+LR++     G+  +   + +F+L  P+
Sbjct: 61  EGQAFLEDCQKTLNDLANAEAAVSLGSVRASGQLRVSAPSGFGRQHVAPLVGDFMLANPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  DCA+R+ + +  SSL+  +L  +     A+P YL     P 
Sbjct: 121 VRVNLNLSDRLVDLVNENIDCAVRIGE-LTDSSLVSVRLGEMRRMVVASPAYLVTHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  HN ++ G        D                   + N    + ++ + G G+
Sbjct: 180 EPADLSGHNCLSLGQQRGWLFRD----PASGEVDALKVNGSFECNDGAVLHEWALAGRGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A    + V  +     L  +++    P   +Y  +P+      +++ F + +  
Sbjct: 236 AWRSLWEVGQDLKEGRLTSVLDAWQAPPMGIYAVFPQRRHLPLRVRLFIDLLKE 289


>gi|91782384|ref|YP_557590.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686338|gb|ABE29538.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 305

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 145/299 (48%), Gaps = 8/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE
Sbjct: 1   MDRFEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  ++   +  L      P+G +R+ T+  L + LL   L +F   YP+
Sbjct: 61  DGALFYERCVRILAEVAEAESSLSNKRENPAGTIRVDTSGTLARALLLPALDDFYRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L +++ID+  D  DC IR+  P + SSL+ R++    +   A+P YL+   EP 
Sbjct: 121 IDVRLGLADRNIDLIQDGVDCVIRMGTP-EESSLVARRIGQARIVTCASPAYLEKYGEPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +++ L +H  + +  +  +    F +   VD  + +  + S L VN     +   VLG G
Sbjct: 180 TLEALSEHRAVNY--VSARTGRTFPFEYEVDGELAKVTLKSVLAVNDGSVYIGAAVLGHG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I     ++V D      L  I+    +P   +   Y      + +L+AF  ++   AR+
Sbjct: 238 IIQPSRFMVSDLINQGALKEILTTYTSPGTPLSVLYAHRRNLSSRLRAFIEWVTELARN 296


>gi|54309528|ref|YP_130548.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913964|emb|CAG20746.1| Hypothetical transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 301

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 136/294 (46%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  V    SF+  AE   +++S +S++IS LE ++G++L YR  R LTLTE GS
Sbjct: 4   IDDLVLFTQVIEHASFSKVAELNKITKSVVSKRISKLENQLGVQLIYRTTRKLTLTEPGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+  + ++    ++    +   +   SG +R++     G+ LL   L +F   +P + +
Sbjct: 64  ILYHRSKDINQVAQSAFDAITGYNEALSGNIRVSVPTISGELLLAEALSDFCQKHPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +DN  +D+     D  IR    ++ SSLI R +        A+  YL+    P + +
Sbjct: 124 EMSMDNHFVDLVAQNYDLVIRTGY-LEDSSLIARHIFNSRWVICASADYLEKHGVPETPK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            L  HN + +     +    F+WL   +               ++ +++ +  +  +GIA
Sbjct: 183 ALHHHNCLGYTQ---QSTGPFDWLFVRNNTETYTLKVDGNFSSDNAVALRKATLANNGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V D+     L+ ++ +       +Y  YP   K + +++A    I  +
Sbjct: 240 YLPTCLVFDDLKSGKLIEVLAEHSGKVVGIYAVYPYTKKPSKRIQALIEHIRER 293


>gi|332530214|ref|ZP_08406161.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040335|gb|EGI76714.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 309

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 128/300 (42%), Gaps = 7/300 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V R GSF  AA QL +  +++SR++  LET++G +L  R  R L+LT  
Sbjct: 2   LDLNDVAVFVQVVRYGSFAEAARQLGIPPNTLSRRVQQLETQLGTRLMQRSTRKLSLTTA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + H   ++    L      L   +  PSG +R+A   D         L  FL  +P +
Sbjct: 62  GQEFHDRCAQAVEGLVDAGQSLLSRNETPSGLVRVAAPADFFDFFPMEWLASFLAEHPRV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPL 181
           ++  +L +   D+  D  D AIR    ++ S L  R+++   +    A+P Y+     P 
Sbjct: 122 RLDFVLSDARADLIADRIDVAIR-GGVLEDSGLFARRVLDAGLDGLVASPAYIAARGMPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+Q+L  H+ + F    P     +       +         L  N+   + +  + G GI
Sbjct: 181 SLQDLADHDCLVFAH--PAGQATWGLSGPDGKDATVQVAGRLSGNTVQVLRKAALAGMGI 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           ALLP  + +       LV ++         V+  Y         + AF + +  K  +++
Sbjct: 239 ALLPSTMTRRELRAGLLVPVLPQFHRKGHGVHLVYASRRHLPSAVSAFIDLVANKFGEFQ 298


>gi|121593441|ref|YP_985337.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120605521|gb|ABM41261.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 304

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 134/293 (45%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  V  +G+FT AA+ L L + ++++ +  LE  + +KL  R  R +T+T 
Sbjct: 1   MDQIQAMRIFARVVEAGTFTRAADSLQLPKGTVTKHVQALEERLRVKLLNRTTRRVTVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +  T  +    +  +  + +    P G+LR+     + + L+  N  +F   YP+
Sbjct: 61  DGAAFYDRTVRLLADFDDIEASMSQERANPRGRLRVDVGSSVARLLIVPNPAQFQERYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L + ++ +D+  D  DC IR    +   SL+ R++  +     AAP YL+    P 
Sbjct: 121 IQMDLGVSDRTVDLIGDNVDCVIR-GGELADQSLVARRIGNLEFITVAAPAYLERFGVPA 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
              +L++ H  + +    P     +      D  + E    S L VN   + +   V G 
Sbjct: 180 HPLDLERSHRTVIY--FSPVSARRYPLEFRKDGEVIETSGPSHLAVNESNAYLNALVAGQ 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +  +  + +     LVR++ D   P   VY  YP     + K++AF ++
Sbjct: 238 GVGQITTFQAQQHFERGELVRVLPDWSHPLLPVYVVYPPNRHLSAKVRAFVDW 290


>gi|330900283|gb|EGH31702.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 305

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 IRLEIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++QEL +H +I +            ++A     +       + VNS    +  C  G G+
Sbjct: 180 NLQELVQHQVIEYFSTSTGKRYGLEFMAD-GMGVEHASACSIAVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V     +  LV ++         +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVAAQLRSGVLVEVLRLHRPAPLPLTALYPPHRQLSRRVRVFVDWLVE 292


>gi|113969529|ref|YP_733322.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113884213|gb|ABI38265.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 313

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGH 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++
Sbjct: 65  LLYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMEKHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLVASPDYIAKHGEPSRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  
Sbjct: 184 QLVDHNCLVY---QGEWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV ++ D  +T    +   YP       K+ AF  FI
Sbjct: 241 LASYLMEDEIAKGTLVPLLRDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFI 291


>gi|330965213|gb|EGH65473.1| LysR protein [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 306

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + ++L  R  R + +T  G+  +
Sbjct: 1   MQAFARVVETGSFTKAAGTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGAVYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +  L  ++  P G+LR+     L   LL   +  F   YPDIQI + 
Sbjct: 61  ERVVRLLAEMDDAETSLSGAASLPRGRLRVDVPSPLASMLLMPAMPAFHARYPDIQIDMG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC +R    I   SL+ R +  + +  Y AP YL+    P    +L+
Sbjct: 121 VSDRIVDLIGENVDCVVR-GGEITDQSLMARHVGDLQLGVYVAPGYLQRMGTPAHPHDLE 179

Query: 188 K--HNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALL 244
              H ++ +  L  +  +   +    D      + +  L V+   + +   + G GI  L
Sbjct: 180 NSSHRIVGY--LWARTGKALPYAMHRDGEQVRVQGLYTLTVDDGNAYIAAGLAGMGILWL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY+ +      +LV + +D    S  +Y  +P     + K++ F +++  
Sbjct: 238 PDYMARPYLARGDLVPLFQDWQLDSMPMYVAFPPNRHVSIKVRVFIDWVIE 288


>gi|167589838|ref|ZP_02382226.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 297

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 130/287 (45%), Gaps = 5/287 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA  GSFT AAEQ+ L + ++S  +  LE  + I+L  R  R + LT +G+  +
Sbjct: 1   MRIFARVAHLGSFTKAAEQMQLPRPTVSNAVQYLEKHLKIRLLQRTTRRVALTAEGATYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+  +   +++   P G +R+        N +   +  F   YPD++I + 
Sbjct: 61  ERCARLLADLDDVETLFEDAGASPRGVIRVDLPERFALNKVIPAIPSFHARYPDLRIVMS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P S  +L 
Sbjct: 121 TTDRFVDLIADGIDCAVRVGA-LSDTSLVARRIGELAQVNCASPAYLARHGTPRSPDDLP 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +         D+ +       +   ++ S + VNS  + +  CV G G+   P 
Sbjct: 180 EHVAVGYFSTRTGRELDWEYADMDTGEMHAVKMRSVVSVNSSQAYLACCVAGLGLIQAPR 239

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +     +  LV ++ +       V   +P       +++ F +++
Sbjct: 240 DGLDAPLADGTLVEVLPEWNAAPLPVSVVFPHGRHLAPRVRIFVDWL 286


>gi|326315466|ref|YP_004233138.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372302|gb|ADX44571.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 299

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 6/287 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             ++VF  V  SGSF  AAE   L  SS++  +  LE  +  +L  R  R ++LT +G +
Sbjct: 5   QAMQVFLRVVESGSFVRAAETSGLPASSVTSIVKRLEKHLQTRLLNRSTRSISLTPEGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+   +  T+  L+ +  +P G+LR+     +   L+  +L +F   YPDI + 
Sbjct: 65  YLHRCREILDLIYETESGLRPA-ERPRGRLRVDMPSGIAHALVLPHLGDFQQRYPDIHLL 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + ++++ +D+  +  DC IR    +  S+LI R+L  +     AAP Y K    P S+++
Sbjct: 124 IGVNDRQVDLIQEGVDCVIRTGA-LNDSTLIARRLGALRWITCAAPSYFKENGTPDSLED 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + +     +   + +++      +  P    L VN     +Q  + G G+  LP
Sbjct: 183 LQRHRAVHYFSSTTRGGGELHFVQD-GVSLAHPVPGTLAVNETGLYLQLGLNGVGLIQLP 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + +V+   D+  L  ++ D   P   V   YP     +  ++AF ++
Sbjct: 242 EVLVRKHLDSGELREVLADKRPPPMPVSLLYPHRRFLSPAMQAFTDW 288


>gi|126443372|ref|YP_001062263.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|134279056|ref|ZP_01765769.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167827719|ref|ZP_02459190.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|226197646|ref|ZP_03793221.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254193149|ref|ZP_04899584.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|126222863|gb|ABN86368.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|134249475|gb|EBA49556.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|169649903|gb|EDS82596.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|225930255|gb|EEH26267.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 299

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAV-DPSLIARRLGTCRSALCASPGYLAEHGVPKRPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++    G GIALLP 
Sbjct: 185 TRHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAATAGGGIALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      LVR++ D   P   +Y  Y    +    ++   +F+  +  D
Sbjct: 241 FAAAEPIRTGALVRVLPDCAAPELGIYAVYASRKQMPLAMRTMIDFLAERFGD 293


>gi|330810393|ref|YP_004354855.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378501|gb|AEA69851.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 309

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 136/295 (46%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LH+S++++++ +  LE  + +KL  R  R + +T 
Sbjct: 1   MDRFDAMQAFVRVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVKLLNRTTRKVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  +  +   P G+LR+     L   +L   L  F   YPD
Sbjct: 61  DGAVYYERVIRLLADMDDAETSVSGAQALPRGRLRVDVPSPLAAMILIPALPTFYGRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI + + ++ +D+  +  DC +R    ++  SLI R++  + +  +AAP YL     P 
Sbjct: 121 IQIDMGVSDRIVDMLDENVDCVVR-GGELRDQSLIARRVGDLALGVFAAPSYLARFGMPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
             +EL+  +  T G L  +  +   +    D  +   +    L ++   + +   + G G
Sbjct: 180 HPRELEDSHHRTVGFLWARTGKSLPYAMRRDGELLHVKGRYALAIDDGNAYLAAGLAGLG 239

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  LP Y+    +    LV + ED       +Y  YP     + KL+ F  ++  
Sbjct: 240 VLWLPKYMSGPHEAQGGLVPLFEDWHLEPMPLYLAYPPNRHISAKLRVFIEWVVE 294


>gi|330860517|emb|CBX70820.1| putative HTH-type transcriptional regulator ltrA [Yersinia
           enterocolitica W22703]
          Length = 310

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 132/298 (44%), Gaps = 10/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  +GSF+  A QL +S S+ISR +S LE  +  +L  R  R L L+E G 
Sbjct: 10  LSEMAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++ +  + + +   +      + S +P G +R++    +G+ ++  ++ EFL  Y  I +
Sbjct: 70  EVFKRCNAMLNAANSVMEISGQYSQEPEGLIRVSVPKAVGRFVVHPHIPEFLQRYSKIDV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QLILD++ +D   +  D  IR+        ++ R+L+ I     A P YL     PL   
Sbjct: 130 QLILDDRYVDFIDENVDLVIRITNQ-PPPGMVGRQLMNIEHLLCATPEYLSAQGTPLYPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ I  G+        F       + I          N     +   +   GI  L
Sbjct: 189 DLAQHSCIYLGETPGDARWKFR---QGTKAITVAVKGRYAANHTGVRLDAVLQHIGIGSL 245

Query: 245 PDYIVK---DNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P +  +       LV+++ +     + S  ++  YP       KL+ F ++I  + RD
Sbjct: 246 PYFTARTALQQGQLVQVLPEWRFISSYSGGLWLIYPPTRYLPAKLRVFIDYIVGRLRD 303


>gi|258626793|ref|ZP_05721601.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258580933|gb|EEW05874.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
          Length = 300

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L   +  +D+  +  D A R+ K ++ +S I RKL  + M   A P YLK C +P
Sbjct: 125 EVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFIARKLTEVAMSTLATPAYLKQCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLAEHRCLT-GSVKRWSYQHNTTQQTID----VPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +  ++      LV +  D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCQEEIARGELVEVFPDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|330890287|gb|EGH22948.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. mori str. 301020]
 gi|330989456|gb|EGH87559.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 298

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + VF +VA + SFT A ++L +S S + + I  LE  +G++LF+R  R + +T +G
Sbjct: 3   SLGSIAVFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEEGLGVRLFHRSTRSIAMTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +LET ++EL  +   P G+LRI+    L   L+   + EF+  YPDI+
Sbjct: 63  SIFLERCRRILSELETAEMELSNARDLPRGRLRISLP--LVSGLVMPVIIEFMRTYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R   P   S L+ R++    +    AP Y      P   
Sbjct: 121 LDIDFSDRMVDIIEEGFDIVLRTGDPG-DSGLMSRRMGGFQLKIVGAPDYFSRRGTPQHP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +          E +           +     +  N+   ++     G GIA 
Sbjct: 180 ADLSRHACLLHKFPSSGKFEHWPLRREAGADDLD-LPQVMVCNTTEILVDVARAGLGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD+++        LV I+ D    + +    +P +   + +L+ F +F+  
Sbjct: 239 LPDFMISSAIRTGELVPILTDYTVHTGSFRLLWPSSKHLSLRLRVFIDFMHA 290


>gi|120597618|ref|YP_962192.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146294243|ref|YP_001184667.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120557711|gb|ABM23638.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
 gi|145565933|gb|ABP76868.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
 gi|319427590|gb|ADV55664.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 303

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 140/293 (47%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIENTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPSYLKLRGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL +H+ I  G      +     L    R         ++VNS + + Q  +   GIA+
Sbjct: 182 QELSQHSGILLGTSRSAPIWP---LGKGPRKTMVNFQRKVRVNSPIMVKQLAMDDFGIAM 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L +   K    N  LV I+++     F VY  Y    +    +  F +F   +
Sbjct: 239 LSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISVFLDFFVKR 291


>gi|294142453|ref|YP_003558431.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328922|dbj|BAJ03653.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 303

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 143/289 (49%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +  + +S+ISR+++ LE ++ ++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGIPKSTISRKVAQLEEQLDVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    +  ++E  +  ++ ++   SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCISIRDEIEAAKATIENTNNHVSGSLRIAIPVSFSQELIANLCSSFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + ++ +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDSEVGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPGYLKANGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL  HN I  G      +     L   +R         ++VNS + + +  +   GIA+
Sbjct: 182 QELANHNGILLGTSRSAPIWP---LGKGNRKTMVSFKRKVRVNSAVMVKKLSLDDFGIAM 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L + + K+   + +LV I+++    +F VY  Y    +    +  F +F
Sbjct: 239 LSNSVCKNELASGSLVPILQEWPIEAFKVYGVYSSRRQLATNISVFLDF 287


>gi|209518365|ref|ZP_03267189.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501184|gb|EEA01216.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 305

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 124/291 (42%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L++F  +  SGSF  AA  + + Q ++S+QI+ LE  +G +L  R +R +TLTE G 
Sbjct: 4   LDALKLFIRIVESGSFAAAARDMGVGQPAVSKQIASLERYLGAQLVRRTSRSMTLTETGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++     +       +  +    V P+G +R+      G+  +   L  F   YP + +
Sbjct: 64  SVYEAGLRIIGDFTELESSVGHGQVSPAGLVRVTVAPVFGRLYVVPRLPAFFSRYPHVSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L    +++++  +  D +I+   P+  SS+I R L +  +   A P YL+    P   Q
Sbjct: 124 DLSATERNVNLVEEGFDLSIK-SGPLADSSMIARHLASSPVVVVATPDYLEKYGRPERPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+H  + F  +       F+    VD P                I    +   G+   
Sbjct: 183 DLDRHACVVFAPMREPRAWRFD---NVDGPRLHVPSGNFHTGDAEQIRAAVLAHMGLTQA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P ++      +  +V ++++       ++  +P   +   K + F +F+  
Sbjct: 240 PGWLFAPEIASGAVVSVLQEFAPMPLPIHAVHPSGRRLPTKTRVFIDFVSE 290


>gi|163855650|ref|YP_001629948.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163259378|emb|CAP41678.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 328

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 131/294 (44%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +GSF+  A QL  + S+ISR ++ LE  +G +L  R  R L L+E G ++
Sbjct: 12  EMAVFVKVVETGSFSETARQLGATPSAISRSVARLEKALGTRLLQRTTRKLRLSEGGHEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H    ++    +       + S +P G +R++    +G+ ++  ++ +FL  YP + +QL
Sbjct: 72  HARCLDMVSAAQAVLEVSGQFSPEPQGLVRVSVPKAVGRFVIHPHIPDFLARYPKVDVQL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ +D+  D  D AIR+     S  L+ R+LV I     A P YL N   P    +L
Sbjct: 132 QLNDRYVDLIDDEVDLAIRITDR-PSPGLMGRRLVDIDHMLCATPEYLANRGMPAHPHDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +  G+        F      D+ +         VN   + +   +   GI  LP 
Sbjct: 191 KAHTCVFLGEEPGDSRWKF---LRGDKRVSVSVHGRYAVNHTGARLDAVLHHLGIGSLPY 247

Query: 247 YIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  +       +V+++ +    +      +  YP       KL AF NF+  + 
Sbjct: 248 FTARHALQQGQIVQVLPEWEFKTNYCGEAWILYPPNRHLPPKLSAFINFMAERL 301


>gi|152981563|ref|YP_001352068.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281640|gb|ABR90050.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 301

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 123/294 (41%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F +     SF  AA  L ++   + R+I  LE  +G++L +R  R L LTE
Sbjct: 1   MDKLKQIEAFVMAVEHNSFAAAALALQVTPVMVGRRIDTLEKRLGVRLLHRSTRRLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS       ++ ++LE  +  L     K +G L ++     G+  +    +EFL  +P 
Sbjct: 61  EGSVYLEHCRKMLNELEHAESALSAGHNKVTGHLIVSAPASFGRQHVAPYAQEFLEQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++   L ++ +D+  +  D  IR+   I   + +  KL            Y K   +P 
Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGNI-DPNFVAIKLAANKRVVCGTREYFKKHGKPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  HN ++F     +    +       + +       L  N    + ++   G GI
Sbjct: 180 TLDDLANHNCLSFNLQGGQQRGWY--FNYRGKTVSVRAQGSLDCNDGELLHRWMTEGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A    + ++   ++  L  +++D   P + +   YP+      K++ F + +  
Sbjct: 238 AWRSVWEIQRQLESGMLETVLDDYAIPEYDIMAVYPQQRNVPAKVRLFISHLKA 291


>gi|319795549|ref|YP_004157189.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598012|gb|ADU39078.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 304

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 121/295 (41%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++ +F  VARSGSF  AA +L +  +++SR+I  LE  +G +L  R  R LTLT  
Sbjct: 2   LDLNEVAMFVQVARSGSFAEAARRLSVPSATVSRRIQQLEARLGTRLMQRSTRKLTLTSA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   H        +L          + +PSG +R+              +  FL  +P +
Sbjct: 62  GESFHERCGPAVEELIEAGQLHVADNSEPSGTVRVTAPTSFFDFFQMEWVDTFLAEHPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++  +L +  +D+  D  D A R   P+Q S  + R++   +    A+P YL     P+S
Sbjct: 122 RLDFVLSDLLVDLIADRIDIAFR-GGPLQDSCYVARRIFASYGELTASPAYLAAHGVPMS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L +H  +   D     +        V++ +          N+   + Q    G GIA
Sbjct: 181 LEDLGEHECVVQPDASGNAIWRLQDAEGVEKDVRVK--GRFNSNTQSVLRQAACAGLGIA 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LP  +         LVR++         +   YP   +    +  F +    K 
Sbjct: 239 ALPSILTAPEIAAGRLVRVLPGYTRAGRGLSVVYPSRQQRPLAVSMFADMAVEKL 293


>gi|307132675|ref|YP_003884691.1| transcriptional regulator [Dickeya dadantii 3937]
 gi|306530204|gb|ADN00135.1| Transcriptional regulator [Dickeya dadantii 3937]
          Length = 298

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 87/300 (29%), Positives = 140/300 (46%), Gaps = 12/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA Q  +++SS+S +IS LE  +G++LF R  R L LT  G 
Sbjct: 5   LQDMALFALVAECGSFTEAARQAGIAKSSLSLRISQLEQSLGLRLFNRTTRKLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E  ++ +Q     PSG+LRI +   LG  LL     EF L +P + +
Sbjct: 65  RYLVHCREMRQASERAEMAMQHLRDNPSGRLRITSPAGLGATLLARLTAEFQLRFPAVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +++ ++ ID+  +  D A+R  KP Q SSLI R L  +  +  A+  YL         +
Sbjct: 125 DVVVADRVIDLVDEGFDAALRTGKP-QDSSLIGRSLGQVPHYLVASAGYLAGSEPIAHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  I       +   ++ +    +  +     S +  ++ L      + G GI LL
Sbjct: 184 ELQSHRCIAH-----RAWPEWGFHHEAEYFLWRLPQSHI-TDNLLYARACALAGGGITLL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWKF 299
           P ++ +   D+  LV ++      S  +Y  YP    N+  L  F +F   F   RD+ F
Sbjct: 238 PAFLCREQLDSGELVCLLPGWQADSNDLYLIYPGRKLNSPALNCFIDFALSFEALRDYSF 297


>gi|301025851|ref|ZP_07189341.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|331675011|ref|ZP_08375768.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
 gi|300395817|gb|EFJ79355.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|331067920|gb|EGI39318.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
          Length = 323

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR     +   +I R L  + +   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGASPED-GVIARPLGKLTVVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGI 262

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 263 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLIYPQRRELSRRVNLFMQWL 314


>gi|82779555|ref|YP_405904.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|309787517|ref|ZP_07682129.1| uncharacterized HTH-type transcriptional regulator yhjC [Shigella
           dysenteriae 1617]
 gi|81243703|gb|ABB64413.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|308925095|gb|EFP70590.1| uncharacterized HTH-type transcriptional regulator yhjC [Shigella
           dysenteriae 1617]
          Length = 291

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 134/290 (46%), Gaps = 5/290 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT +G   ++  
Sbjct: 2   FIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRA 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P I+++L   +
Sbjct: 62  KDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELSSHD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +DI  D  DC IR    +    +I R L  + M   A+PHYL     P S  +L  H 
Sbjct: 122 RPVDILHDGFDCVIRTGA-LPEDGVIARPLGNLTMVNCASPHYLTRFGYPQSPDDLTSHA 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           ++ +   +      F  +A+V+          L VNS  + +   + G GI  +P   V+
Sbjct: 181 IVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRIAVR 239

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 240 EALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 289


>gi|160898474|ref|YP_001564056.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364058|gb|ABX35671.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 305

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 143/294 (48%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             +   VF  VA + SF  A   L +S S+I + ++ LE  +G++LF+R  R +TLT +G
Sbjct: 11  SLNGFVVFVQVAETRSFVAAGRLLGISASAIGKSVARLEDRLGVRLFHRSTRSITLTAEG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +     +  +  ++E  Q+EL ++S  P G+LR++    L  +L+   L EF+  YP+I+
Sbjct: 71  TLFLERSRRILAEIEAAQLELSQASTAPRGRLRVSLP--LVSSLVLPVLGEFMRAYPEIE 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ +D+  D  D  +R   P   S L  R+L        A+P YL     P   
Sbjct: 129 LDLDFTDQLVDVIEDGFDAVVRTGAP-ADSRLSARRLGAFGYLLVASPGYLAQRGTPRVP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H+ + +       +E +        P  +   S +  N+  + + + + G GIA 
Sbjct: 188 EDLLQHSCLHYRYPHSGKLEPWVLRRAAGAPELQLPTS-MICNNIETRLCFALQGLGIAY 246

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP++ +++   +  L  ++ D +  +   +  +P +   + KL+A  +F+  + 
Sbjct: 247 LPEFSIREPLADGRLQPVLADCMEHTNVFHVLWPASKHPSPKLRALVDFLCARV 300


>gi|76819501|ref|YP_337608.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126456556|ref|YP_001075227.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167742167|ref|ZP_02414941.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167819345|ref|ZP_02451025.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167849191|ref|ZP_02474699.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167897789|ref|ZP_02485191.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167906134|ref|ZP_02493339.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167914456|ref|ZP_02501547.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167922355|ref|ZP_02509446.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|242311132|ref|ZP_04810149.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254189944|ref|ZP_04896453.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254262347|ref|ZP_04953212.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|76583974|gb|ABA53448.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|126230324|gb|ABN93737.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|157937621|gb|EDO93291.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|242134371|gb|EES20774.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254213349|gb|EET02734.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 299

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAV-DPSLIARRLGTCRSALCASPGYLAEHGAPKRPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++    G GIALLP 
Sbjct: 185 TRHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAATAGGGIALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      LVR++ D   P   +Y  Y    +    ++   +F+  +  D
Sbjct: 241 FAAAEPIRTGALVRVLPDCAAPELGIYAVYASRKQMPLAMRTMIDFLAERFGD 293


>gi|238896505|ref|YP_002921243.1| putative transcription regulator protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238548825|dbj|BAH65176.1| probable transcription regulator protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 303

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V   GSFT AA +L LS   + + I+ LE+++  +L  R+ R  +LT+
Sbjct: 1   MDKLRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  ++   +  ++   + P+G LR++     G +++      FL  +P 
Sbjct: 61  AGRVYFDEAKRVMEQVSIAESAVERLRLAPAGTLRVSAPTSFGASVIAPLTATFLQAWPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L N+ +D+  +  D AIR+ + I    L+ R L    M   AAP YL     P 
Sbjct: 121 VRVELDLTNRMVDLVDEGVDLAIRIGE-IHQEDLVARYLAPYRMVICAAPAYLARYGTPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  ++      +       L  V+  +   R + L+ N   ++ Q  + G+G+
Sbjct: 180 RPEDLADHLCLSHTVWTARNEWR---LPGVEGEVRWKRDAVLRCNDGYALRQAAIAGAGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + P+ ++ D   + +LVR++E        V+  + +  +   KL  F   +
Sbjct: 237 LMQPEVLLADALASGSLVRVLEAWTPQPRPVHLLWRQDRRPLPKLTQFIAHL 288


>gi|330821573|ref|YP_004350435.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373568|gb|AEA64923.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 300

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 131/287 (45%), Gaps = 7/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V  +GSF+ AA +L L Q ++S+ ++ LE  +G +L  R  RGLT T+ G + 
Sbjct: 6   AMETFVAVVEAGSFSAAARRLKLGQPAVSKSVAQLEAHLGARLLLRSTRGLTPTDAGQRF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +        + +  +  ++ESS   SG+LR+   +   +  +   LK F+  +PD+Q+ +
Sbjct: 66  YEHARLAIEEADQAEQAVRESSAGLSGRLRVGAAVTFARLHVLPALKTFVDRHPDLQLDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ILD++ ID+  +  D A+R+ + +  SS+    + +      A P YL     PL+  EL
Sbjct: 126 ILDDRAIDLLEEGVDVALRMGR-LDDSSMTAHPIASSRRLVVATPEYLAEAGTPLTPAEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I +          F         +       ++V++   +    +   G+A+  +
Sbjct: 185 SRHQAIVYSQRGGGESWSFQ---RDGTEVTVAVSGRVRVSAAEGMRTAVLADMGLAVASE 241

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++      N  +  ++ D   P   ++  +P     T K +AF  F+
Sbjct: 242 WMFGPELANGTVRAVLTDWALPPVDLWAVFPSGRLVTSKARAFVAFV 288


>gi|157369422|ref|YP_001477411.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321186|gb|ABV40283.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 303

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 125/290 (43%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +LR F V+   GSFT AA QL +S S++S+    LET +G++L  R  R + LT+ G
Sbjct: 5   DFAELRAFAVIVEHGSFTRAAAQLGISASALSQTQRNLETRLGVRLLNRTTRSVALTQAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    S    ++E    +     ++P+G LR+  +     + L   L  F   YPDI 
Sbjct: 65  ELLLARLSPAMAEIEAAVTQTAALRLQPAGTLRLNASGLAAIHYLAPLLAPFNAHYPDIV 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L ++++ +D+     D  +RL + ++   +         M   A+P YL     P + 
Sbjct: 125 VDLSVEDRLVDMVAAGFDAGVRLHERLEKDMVAVALGGEQRMCVVASPAYLARYGTPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
             L +H  +      P     + W         E  +   L V+    +++    G GIA
Sbjct: 185 DALRQHRCL--NTRWPTNGSIYRWEFERGGEKLEIAVEGPLIVDEPQVLVRAAADGLGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L +  V +   +  L+ ++     P    Y  YP   +    L+AF +F
Sbjct: 243 YLFESQVAEALNDGRLLPLLAAWTPPFPGFYLYYPANRQMPRPLRAFIDF 292


>gi|114048816|ref|YP_739366.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113890258|gb|ABI44309.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 303

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 142/293 (48%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE E+G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEELGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LR+A  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIESTHDDVSGSLRMAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPAYLKARGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H+ I  G      +      A       + ++   +VNS + + Q  +   GIA+
Sbjct: 182 KELSEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKV---RVNSPIMVKQLALDDFGIAM 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L +   K    N  LV I+++     F VY  Y    +    + AF +F   +
Sbjct: 239 LSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISAFLDFFVKR 291


>gi|186476004|ref|YP_001857474.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192463|gb|ACC70428.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 288

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +GS T AAE+  LS + + + I  LET++  +L  R  R  +LTE G + +
Sbjct: 1   MEVFVAVVEAGSLTAAAERFDLSSAMVGKHIRSLETQLSTRLLTRTTRRQSLTEIGRQYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L+I   +  G  L    + ++L LYP++ ++L 
Sbjct: 61  EQCRRILADVKAAESLAEAMTSAPRGTLKITVPLTYGVELFSPAMTDYLNLYPEVSLELD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+  D+  +  D A+R+ + +  SSL+ R L    M A A+P YL+    P +  +L 
Sbjct: 121 LSNRIFDLVDEGFDAAVRIGR-LPDSSLVARPLKPYRMRACASPSYLQRMGTPATPADLV 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F     + +      A  D  +   R    + N+  ++    + G G+ L P+ 
Sbjct: 180 HHECLGFLHWGREGLWRLGGDAEADYQL---RPGRFRANNGQALKMAALRGFGLVLQPEA 236

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++        LV ++ED +     V+  YP   + T KL  F +F+  +
Sbjct: 237 LLAREIGRGELVSVLEDYLPEGAPVHLIYPRDRQPTPKLTTFIDFVIER 285


>gi|115360852|ref|YP_777989.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286180|gb|ABI91655.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 310

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   G+F  A+E + ++   +SR I+ LE ++ I+LF R  R ++LTE+G + +
Sbjct: 12  ISVFAAVVDMGTFAAASEVIGMTPPGVSRAIARLEKKLNIRLFNRTTRSVSLTEEGRRFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE        S+    GKLR+     + + +L   L  F+  +P+++I+LI
Sbjct: 72  EQVMPHLAGLEEAAAAAAGSASAVRGKLRVNLDPVVYRTILGPQLDAFMDAHPELEIELI 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
             +   D+ MD  D A+R  +P ++S+LI RKL+   +   A+P Y+     P   ++L 
Sbjct: 132 ARDSLGDLVMDGFDIAVRFGEP-RASTLIARKLLDTGIVTVASPAYIARWGRPAKPEDLE 190

Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              H  I F +  P+  + F W     R  I       L VN   +++  C+ GSGIA +
Sbjct: 191 SRSHRCIEFRN--PETGKPFAWEFHRRRKRIVVDTRGRLTVNDPGALLNACLAGSGIAQM 248

Query: 245 ----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                + ++  N  L+ +  +     F +Y  YP       K +AF +F+  
Sbjct: 249 LLLGAEPLIA-NGQLINLFPEWADERFPLYAYYPSRHHLPAKTRAFLDFVVE 299


>gi|325920481|ref|ZP_08182408.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325549061|gb|EGD19988.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 308

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + + L  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAAETLHMSRASVTQVVQQLEARLRVTLLNRTTRRVHVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L ++S  P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAAYYERVLRLLADMDDAETSLSDASALPRGRLRVDVPSPLARLILMPALPTFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +D+  +  DC +R    I   SLI R++  +    YAAP YL+    P 
Sbjct: 121 IQLDMGVSDRRVDLIGENVDCVVR-GGIITDQSLIARRVGDLQAGVYAAPSYLQRLGTPA 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             QEL+  +H  + F          +      +    + R   +  +   + +   + G 
Sbjct: 180 HPQELENTQHRCVGFMRWSNNKTVPYVMQRGNEAVNLQGR-YVVASDDGNAYLAAGLAGM 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+ K +     LV++ +D       +   +P     + KL+ F +++  
Sbjct: 239 GVLWLPVYMAKAHLASGELVQLFDDWSLEPMPLSIAFPPNRHVSAKLRVFIDWVIA 294


>gi|330817135|ref|YP_004360840.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327369528|gb|AEA60884.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 322

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 129/299 (43%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + + A  +  +S +  S +++ LE ++G +L +R  R +TLT+
Sbjct: 15  PLDLLDVTLFVRAALLANVSAAGREFGVSATVASSRLAQLERQLGARLLHRTTRRVTLTQ 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    ++ +  +  +  +P G+LRI+ +   G+  +   +  FL  YP 
Sbjct: 75  DGELFLARAQTLLDAADSARAAVGRARGEPHGRLRISMSSSFGRQHVAPVIPAFLRRYPQ 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  D AIRL   ++ SSL+ R+L        A+P YL     P 
Sbjct: 135 VSIDLRLSDEIVDLVDEGIDLAIRLGA-LRDSSLVARRLAVNRRVVCASPAYLAEHGTPH 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +  GD      E      T   P+       L  ++  +I +  V G GI
Sbjct: 194 HPADLARHECVVLGDQRDWAFE------TPAGPLTVRVGGRLVASNGEAIREALVDGFGI 247

Query: 242 ALLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     + +LV ++ D        ++  YP       KL AF +FI     D
Sbjct: 248 AIKSTWDVGPNLRDGSLVPVLADYPLAEPSAIWAVYPSRAFVPLKLTAFIDFIAAHFGD 306


>gi|28898782|ref|NP_798387.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364144|ref|ZP_05776850.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260877227|ref|ZP_05889582.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260897827|ref|ZP_05906323.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|28807001|dbj|BAC60271.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308087631|gb|EFO37326.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308090284|gb|EFO39979.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308115202|gb|EFO52742.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 298

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 138/299 (46%), Gaps = 9/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT 
Sbjct: 4   KVNLADIRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G + +    +    ++   I   + + +  G +R+      +G++++   + EF+  YP
Sbjct: 64  AGERFYHDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I L   +  ID+  D  D A R+ + +  +  + RKL+T+ M   A+P Y++    P
Sbjct: 124 NVSIDLDFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +EL +H  +T           +      +          L+  +  +++   + G+G
Sbjct: 183 IHPKELAEHRTLT----GSVARWSYRKADNPNDHTDVVVKGNLRCKNGRALVMGALHGNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  +P     +      L+++M +   PS      +        +L+ F +FI  K  D
Sbjct: 239 IIRVPLSYCAEEVELGQLIKVMPNWEIPSVPFSAIFHRDRYQPKRLRTFIDFIKQKFED 297


>gi|293394432|ref|ZP_06638730.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291423057|gb|EFE96288.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 297

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 136/286 (47%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F      GSF  AA +  LS +   + +S +E+++ ++L  R  R L+LT+ G + +
Sbjct: 1   MQIFIAAVDEGSFAAAARRFKLSAAMAGKHVSAIESDLNVRLLQRSTRRLSLTDAGERYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   LE    E  +    P G LR+A  +  G   L   +  +L  +P++ + ++
Sbjct: 61  ERCKVILEVLEDANREASDVQKTPKGLLRVAAPVAFGAMHLGRIVSRYLEQFPEVSLDVV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++K  D+  +  D AIR+ +  +  +L+ R+L    M   A+P YLK    P +  +L 
Sbjct: 121 LEDKYADLLENRIDVAIRVGR-FEDPTLVTRRLAPCRMVLCASPEYLKKHGTPETPDDLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +   + F   +     D+       RP        +  N+   +++  + G+GIA  P++
Sbjct: 180 RAPRLAFSQAVSAG--DWTIYDAQGRPHSIEGPCRMTANNIQLLLESVLAGTGIAYGPNF 237

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  ++     L++++    T   T+   YP A++   K+++F +FI
Sbjct: 238 VFGEHIKQGKLIKLLPAYRTTELTIQAVYPSAIRIPFKVRSFVDFI 283


>gi|114046762|ref|YP_737312.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|117919635|ref|YP_868827.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|113888204|gb|ABI42255.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
 gi|117611967|gb|ABK47421.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 313

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGH 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++
Sbjct: 65  LLYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGAMHIIPALPSFMAKHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLVASPDYIAKHGEPSRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  
Sbjct: 184 QLVDHNCLVY---QGEWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV ++ D  +T    +   YP       K+ AF  FI
Sbjct: 241 LASYLMEDEIAKGTLVPLLRDWQLTHHLPLQAVYPRRKHLAPKVSAFIEFI 291


>gi|312173903|emb|CBX82157.1| probable RuBisCO transcriptional regulator [Erwinia amylovora ATCC
           BAA-2158]
          Length = 302

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M    D+LR    F     SGSFT AA +LHL+ S++S+ I+ LE  +G +LF R  R L
Sbjct: 1   MPVSEDRLRGITPFVASVESGSFTAAAGRLHLTCSAVSKSIARLEARLGSRLFERTTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G   +   + V  +L   +  L      P G+LR+A     G+  +   L +F  
Sbjct: 61  VLTDAGQAFYDTCARVLGELAEAESVLAAQRSMPVGRLRVAVPHTFGRLHVMPLLNDFCQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN 176
            +P++Q+ L   ++ +D+  +  D A+R+  P     SL  R L +  +   AAP YL  
Sbjct: 121 QHPEMQLNLSFSDRFVDLFEEGIDVAVRIGGPGNYPPSLGVRYLGSERLIFCAAPDYLAQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P S+ +L++H  I + + I      ++  +   R         + +    +      
Sbjct: 181 HGMPQSLAQLEQHKAIVY-NRIDGSTSPWHVASLDGRITTRTVAHRMALADGEAQRSAVA 239

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            G G+A +  +++        L+ I+  +      +Y  +P   +   K+ A  N
Sbjct: 240 AGLGVAQMATWLMGQQLAQGELIPILPQLSVAGLPLYVVWPRRKQLMPKVDALLN 294


>gi|323966039|gb|EGB61479.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|327251164|gb|EGE62857.1| hypothetical protein ECSTEC7V_4151 [Escherichia coli STEC_7v]
          Length = 299

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 135/299 (45%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL  +P 
Sbjct: 61  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   N+ +DI  D  DC IR    +    +I   L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHNRPVDILHDGFDCVIRTGA-LSEDGVIACPLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +     G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLSVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGFAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEY 297


>gi|156936242|ref|YP_001440158.1| hypothetical protein ESA_04141 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534496|gb|ABU79322.1| hypothetical protein ESA_04141 [Cronobacter sakazakii ATCC BAA-894]
          Length = 300

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 125/293 (42%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR GSFT AA QL ++QS++S+ I+GLE  + ++L  R  R ++LT
Sbjct: 1   MKRNLNDLFSFVTVAREGSFTRAAAQLGVTQSALSQAIAGLENRLKLRLLTRTTRSISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L       + ++E     L     KP+GK+RI     +   LL   L   L  YP
Sbjct: 61  TAGERLLEAIGNRFDEIEAELDMLSALRDKPAGKVRITCDPHVLHALLLPKLTPILRDYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++   ++   +I  D  D  +RL   I    +       + M A A+P Y      P
Sbjct: 121 DIEMEFDANHGFRNIVADRFDAGVRLGGTIDKDMIAVPISPPMRMAAAASPDYFAAHPVP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  HN I         +  +      D P+       L  N+   I+   + G G
Sbjct: 181 ETPHDLVAHNCINLRMTSGGGLYVWE-FDGQDGPVNVRVEGQLIFNTAAHIVHAALDGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP+    D   +  LVR++E    P    Y  YP   + +         +
Sbjct: 240 IAFLPEGEFDDHFKDGKLVRVLEAWCAPFPGYYLYYPSRKQPSPAFSLVVEAL 292


>gi|76812150|ref|YP_333284.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|76581603|gb|ABA51078.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
          Length = 333

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 37  DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 96

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 97  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 156

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 157 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 215

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 216 ADLCAHRCIVLGEQPR-----VEWRFDGPHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 270

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W++
Sbjct: 271 KSIWDVGPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 330


>gi|260901544|ref|ZP_05909939.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308110898|gb|EFO48438.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
          Length = 298

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 136/296 (45%), Gaps = 9/296 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT 
Sbjct: 4   KVNLADIRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G + +    +    ++   I   + + +  G +R+      +G++++   + EF+  YP
Sbjct: 64  AGERFYHDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L   +  ID+  D  D A R+ + +  +  + RKL+T+ M   A+P Y++    P
Sbjct: 124 HVSIDLDFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +EL +H  +T           +      +          L+  +  +++   + G+G
Sbjct: 183 IHPKELAEHRTLT----GSVTRWSYRKADNPNDHTDVVVKGNLRCKNGRALVMGALHGNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P     +      L+++M D   PS      +        +L+ F +FI  K
Sbjct: 239 IIRVPLSYCAEEVELGQLIKVMPDWEIPSVPFSAIFHRDRYQPKRLRTFIDFIKQK 294


>gi|222086880|ref|YP_002545414.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724328|gb|ACM27484.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 303

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 132/293 (45%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G+FT AA  L + +++++  I  LE  +  KL  R  R + +T 
Sbjct: 1   MDQLSAMRAFARVVETGNFTRAAATLSMPKATVTTLIQSLEAHLHAKLLNRTTRRVMVTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    ++  +++     +  S   PSG+LR+       + ++   L +F   YPD
Sbjct: 61  DGALYYERAIQILSEIDELDGSISNSQSLPSGRLRVEMAGAFAEKIIMPALCDFYQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L + ++ +D   +  DCA+R   P    SLI R++  I +   AAP Y++    P 
Sbjct: 121 IHIDLGVGDRLVDYLAENVDCALRAGMP-SDQSLIARRVGEISLITCAAPLYIEKFGLPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              EL+  H  +++       +  F +    +     PR   L VN   S +   + G G
Sbjct: 180 RPDELESTHYAVSYFRAQTGRVIPFEFQRGNESLEINPR-YILSVNDSRSYVNAAMAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA  P ++++D     +L+ ++         ++  YP     + K++ F +++
Sbjct: 239 IAQAPAFMIRDELARGDLIPVLPGWTRSPIPLHIVYPPNRHLSNKVRVFVDWL 291


>gi|327480180|gb|AEA83490.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 299

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  V   GSF  AAE+L  S S +SRQI+ LE  +  +L YR  R ++LTE G 
Sbjct: 4   WEGLDEFVAVVECGSFMRAAERLRASSSHVSRQIARLEERLQARLLYRTTRRVSLTEAGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +   + + +    P+G LR+   +  G+  +   + EF+  +P +++
Sbjct: 64  TFFARCQRLIEERDDAFLAISDLHSAPTGLLRMTAAVAYGERFIVPLVNEFMARHPQLRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIRL K +  S L+  ++    M+  AAP YL+    P ++ 
Sbjct: 124 DIELSNRTLDLVQEGYDLAIRLGK-LGESRLVATRIAPRAMYLCAAPGYLERYGRPHTLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +HN +           D     +  R          + NS  +++   + G G+  L
Sbjct: 183 ELARHNCLI-------GTSDVWSFQSDGREQHFKPSGNWRCNSGQAVLDAALRGFGLCQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           PDY V +      LV ++E    P   V+  YP+      K++     +
Sbjct: 236 PDYYVLEPLRRGELVSLLEANQPPDTAVWAVYPQRRYPLPKVRLLVEAL 284


>gi|294141696|ref|YP_003557674.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328165|dbj|BAJ02896.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 303

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/302 (27%), Positives = 147/302 (48%), Gaps = 17/302 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    +L  F  V  +GS + A+    +  SSISRQ+  LE ++GI+L  R+ R + LT
Sbjct: 1   MSM-LTRLHYFNCVVETGSISKASRVFDIQPSSISRQLMALEKDLGIRLLNRNTRNIGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++ +  +  +L+     + E    P G L+++ T+  G++ +   +  F+  YP
Sbjct: 60  EAGLTYYQYSQRIVSELDEAHRAVNELQKNPKGHLKVSMTVGFGESCVLPLISAFIRQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L L  + ID+  +  D AIR    +  S+LI RKL   +    ++P Y+    +P
Sbjct: 120 EVNIELELTERVIDMVEENVDIAIRSGH-LPDSNLIARKLTDNNFLICSSPQYITQHGQP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237
           LS  +L + + I +G           WL     P    +++    L VNS     Q  + 
Sbjct: 179 LSANDLHEFDCIKYGYA-----GWREWLVMTSAPHAFKKLTISEGLTVNSVNGQKQLMLN 233

Query: 238 GSGIALLPDYIVKD---NPNLVRIM-EDVITPSFTV---YFCYPEALKNTGKLKAFRNFI 290
            +G AL+P + VK+   N +LV+I+ +D  +P   +   Y  Y +    + K++ F +FI
Sbjct: 234 DAGFALIPLWAVKEELKNGSLVQILAQDTFSPCAPLSSTYALYQKRELISPKIRVFLDFI 293

Query: 291 FL 292
             
Sbjct: 294 RE 295


>gi|329115110|ref|ZP_08243865.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter
           pomorum DM001]
 gi|326695553|gb|EGE47239.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter
           pomorum DM001]
          Length = 323

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 132/299 (44%), Gaps = 7/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  R+F  V  + SFTHAAE L + +SS+S  +  LE+ VG +L  R  R +  T 
Sbjct: 17  MDRIDLFRIFARVVEAASFTHAAETLGMPRSSVSAAVQQLESRVGARLLTRTTRSVAPTP 76

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E  +   ++S     G LR+     +G+ ++   L +FL  YP 
Sbjct: 77  DGAAFYEHCLRLVADVEEAENLFRQSESAVQGVLRVNMPGRIGRLIVAPALPDFLATYPG 136

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L + +K +++  +  DC +R+  P+Q S LI R++  + +   A+P YL     P 
Sbjct: 137 LSVELGVTDKAVNLVEEGLDCVLRVG-PLQDSGLIARRMGELKLINVASPAYLHQHGVPQ 195

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L   H  + +       +E + W               + VNS  +++   + G G
Sbjct: 196 CPADLLHGHEAVNYASPQNGRVEQWEWEEN-GLTHTLDIPGRVTVNSAEALIACALAGLG 254

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  +P Y V+       LV+++         +   YP     + +++ F  ++    R 
Sbjct: 255 MIQIPAYDVRSYLHTGQLVKVLPKWCAAPLPMALLYPHRRHLSMRVQVFAAWLEELVRQ 313


>gi|163736580|ref|ZP_02143999.1| indolepyruvate ferredoxin oxidoreductase [Phaeobacter gallaeciensis
           BS107]
 gi|163742773|ref|ZP_02150158.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384028|gb|EDQ08412.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161390450|gb|EDQ14800.1| HTH-type transcriptional regulator, LysR family [Phaeobacter
           gallaeciensis BS107]
          Length = 290

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 99/276 (35%), Positives = 162/276 (58%), Gaps = 4/276 (1%)

Query: 15  ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVY 74
           A +GS THA ++L+LSQS++SRQI  LE  +   LF+RHARGL LTEQG  L   T  + 
Sbjct: 2   ADAGSLTHAGDKLNLSQSAVSRQIRALEESLSSTLFHRHARGLILTEQGELLFDATKSMS 61

Query: 75  HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDID 134
            +LE     +++S  +  G+LR+ TT   G   L   L +    YPD++I L+L+ + +D
Sbjct: 62  KRLEAASARIRDSEEEVFGELRVTTTFGFGTLWLAPRLTKLYEQYPDLKIDLMLEERVLD 121

Query: 135 ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF 194
           + M  AD AIR+++P Q+  LI+++L+T+ M  YA+  Y++    P   +++  H LI  
Sbjct: 122 LPMREADVAIRMKEPSQAD-LIRKRLMTVQMKLYASRAYVERNGTPEQAEDIVDHRLIC- 179

Query: 195 GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPN 254
               P+  +  +    V + +     S L VN+Y  ++Q  +   GI +LPDY+ +D P+
Sbjct: 180 --QNPRSAQVGSAAVLVQKLMTHNPSSLLTVNNYFGVLQGVIHDLGIGVLPDYVTEDFPD 237

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LV ++++  T    VY  YPE L+++ ++ AFR+F+
Sbjct: 238 LVPVLQEEDTSDVPVYLAYPEELRHSRRISAFRDFV 273


>gi|113866914|ref|YP_725403.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113525690|emb|CAJ92035.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 302

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 128/297 (43%), Gaps = 11/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD   + VF   A  G+ + AA  L LS SS S ++  LE  +G +L +R  R L LT
Sbjct: 1   MHFDLLDIAVFVRAAALGNLSAAARDLGLSTSSASARLGRLEQSLGSRLLHRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +      ++          +  S+ +P G+LR+      G+  +   L EFL  YP
Sbjct: 61  ADGERFLPHAEQLLATAALASASVGTSAERPRGQLRVTAPASFGRQHVSPALPEFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + L L ++ I +     D A+R+   +  S+L+ R L   H    A+P YL+    P
Sbjct: 121 DIALDLRLTDQVIGLVDASIDVALRMG-VLPDSTLVARALAPSHRVICASPAYLQRHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN +   D             T            L+V++   +    V G G
Sbjct: 180 RHPDDLRQHNCLVLADQSAWR------FNTPLGETVVHVRGNLRVDNGEVLRDAVVAGVG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I+L   + V     +  LV ++++  + P+ +++  +P       K +AF +F   +
Sbjct: 234 ISLKSTWDVGPLLRSGALVTVLDEYPVVPAVSIWAVFPSRHLVPPKTRAFVDFFAER 290


>gi|115360564|ref|YP_777701.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285892|gb|ABI91367.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 305

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 136/286 (47%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   +
Sbjct: 7   MRVFTRIVETGSFTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRISLTEDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  + ++   P G+L++     + + ++   L EFL  +P+I I+L 
Sbjct: 67  ERCVGVLREIDDMEAAVSQARNVPRGRLKVNLPPAMAKQIMVPALPEFLAAHPNISIELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S +I R++ ++     AAP YL  C  P ++ EL 
Sbjct: 127 VTDRQIDLVGEGVDCVVRIGA-LDDSGMIARRIGSLTTCTCAAPAYLDRCGAPETVDELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I+           ++++   +  I +     + VN   + ++  V G G+     Y
Sbjct: 186 QHVAISHISADTGRPRPWDYVVDGETRIVQ-MCGTVAVNDADTYIECGVAGIGLIKTSLY 244

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V+    +  L  ++ D   P   +   YP       KLK F +++
Sbjct: 245 LVEPYLKSGRLREVLTDFNAPPRPISILYPPNRHTPVKLKIFVDWL 290


>gi|310815366|ref|YP_003963330.1| Transcriptional regulator [Ketogulonicigenium vulgare Y25]
 gi|308754101|gb|ADO42030.1| Transcriptional regulator [Ketogulonicigenium vulgare Y25]
          Length = 302

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 137/303 (45%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  R+   V   GSF   AE+  +S    S+ IS LE+++G++L  R  R L+LTE
Sbjct: 1   MDRLDADRLLISVVDLGSFARGAERHGVSPGQASKVISRLESDLGVQLLSRTTRALSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  ++E     +++++ +PSG+LR+   +  G + L   L EF   YP+
Sbjct: 61  AGQAYVERMRRVVEEVEAIDASVRQATGRPSGRLRVTAPLTFGVSTLTPILVEFARAYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + +   ++ + +  +  D A+R+  P+  SSLI RKL  I +   A+P YL     P 
Sbjct: 121 ITLDISFSDRVVSLVDEGFDAAVRIGHPV-DSSLIARKLTDIRIVLGASPGYLAAHGTPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L  H+ +   +        FN   T    +  P  S + +++  S  +   LG GI
Sbjct: 180 QPAALVGHDCVIDANFTDATRWRFN---TAGGRVSVPVQSRIVLSNAESCARAASLGLGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--- 295
           A +P ++      +  LV +M         ++  +P       KL++F  F+    R   
Sbjct: 237 ARIPSFVAGPMFQSGALVPLMTQTEDDPVGLFIVFPPGRHLPLKLRSFVEFLAGHFRGTP 296

Query: 296 DWK 298
           DW+
Sbjct: 297 DWE 299


>gi|170720217|ref|YP_001747905.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758220|gb|ACA71536.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 302

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +RVF  V   GS + AA+QL LS+  +SR ++ LE  VG +L  R  R L+LT 
Sbjct: 1   MDRLNAMRVFVTVVDLGSQSAAADQLQLSRPVVSRYLAELEDWVGARLMQRTTRKLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +       Q  +Q+ +  P G LRI+ +   GQ  L   +  ++  YP 
Sbjct: 61  AGLETLPRCRHLLELAGDLQAAVQQPADAPRGALRISVSTSFGQAQLVDAVAAYVRRYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L + ++ +++  +  D AIR    +   +LI R+L        AAP YL     P 
Sbjct: 121 VKVELQMLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLTVCRSVVCAAPAYLHEHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL +HN +T                   +PI  P    +  N  +++ +  + G+G+
Sbjct: 180 RVEELSQHNCLTHAYFGHSVWH----FEVGGQPITVPVEGNISANEAMTLQKAALAGAGV 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP Y          LVR++         +   Y         L+   +F+  + RD
Sbjct: 236 AMLPTYQAAAAMRTGELVRLLPYARPQELNLNAVYTSRKHMPATLRTMLDFLAQRFRD 293


>gi|85710262|ref|ZP_01041327.1| transcriptional regulator (LysR family protein) [Erythrobacter sp.
           NAP1]
 gi|85688972|gb|EAQ28976.1| transcriptional regulator (LysR family protein) [Erythrobacter sp.
           NAP1]
          Length = 300

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 142/300 (47%), Gaps = 11/300 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LR F  V  SGSFT AAE+L ++ SS+SR I+ LE E+G +LF R  R +  TE 
Sbjct: 1   MSIENLRTFLAVWYSGSFTAAAEELAVAPSSVSRAIAALEGELGARLFQRTTRAMRPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    S +  + +  +  L     + +G+LRI+++I   Q ++   LK F   +PD+
Sbjct: 61  GERLFPRASGLVEEWDAARQALAGEQAQLAGRLRISSSIAFSQIVIAPMLKRFKADHPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +++  +  D AIR  + ++ SSLI RKL  +  H  A+P   +   +   
Sbjct: 121 TIDLHLSDDRVNLVEEQIDIAIRHGR-MEDSSLIARKLGAVRYHLVASPRLSEQIGKIED 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL + +L+TF     +   +F       R    P    +   + L I +  +   G A
Sbjct: 180 PEELRQVSLVTFSFGEFRRQWEFRRGQDTRRVQISP---TITATNALVIREAVLNDCGAA 236

Query: 243 LLPDYIVKDN---PNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LL D++++D      LV I+ D           ++  YP       K + F  F+  + R
Sbjct: 237 LLADWMIEDELERGELVPILPDWNVSGALAQSDLWLVYPSRSFIPAKTRIFAEFLEAEFR 296


>gi|299770124|ref|YP_003732150.1| transcriptional regulator, LysR family protein [Acinetobacter sp.
           DR1]
 gi|298700212|gb|ADI90777.1| transcriptional regulator, LysR family protein [Acinetobacter sp.
           DR1]
          Length = 297

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 132/286 (46%), Gaps = 4/286 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +   GSF  AAE L+ S +  S+ IS LE E+G++L  R  R L  TE G   +   
Sbjct: 2   FISIIEQGSFVKAAENLNTSVAQASKLISKLENELGVQLLKRSTRSLKPTELGLAYYHRI 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            ++  + +  +I ++  S  P GKL+I+     G   L   L  F   Y  I++ +   +
Sbjct: 62  KQLMAEFDEIEISIKNQSRAPVGKLKISAPNSFGTVQLSKTLVNFAQKYSQIELDVSFTD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +++  +  D AIR+ + ++ ++LI   L  I     A+P YL+    P S+Q+L+ H+
Sbjct: 122 RTVNVIEEGFDIAIRIGE-LKDNNLIATPLSQIRFVLVASPLYLEKFDCPQSLQDLETHS 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            I   +        F   +  +          +   +  + +   + G GIA LP +I+K
Sbjct: 181 CIIDTNFKDPYEWAFFEKSPSNVLHTINVNGRIHFANTEACLAATIAGLGIARLPMFILK 240

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           D   +  ++ I+E+   P   +Y  YP A     K++   +++  +
Sbjct: 241 DALIDKKIIPILENYELPRRGLYAVYPPAKHLANKVRTLIDYLKEQ 286


>gi|238023516|ref|YP_002907748.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878181|gb|ACR30513.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 303

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 138/297 (46%), Gaps = 7/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LRVF VV R  SF+ AAE+L +S + +S++++ LE ++G +L +R  R + +T+ G
Sbjct: 6   NLDDLRVFSVVVRLTSFSAAAERLGVSPAYVSKRVALLEAQLGARLLHRSTRRVAVTDSG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++   ++    ++  +   P G LRI+++   G+++L   L +F   Y  I 
Sbjct: 66  ERVVAWAEKILDDVDHLVEDVSTTRTVPRGTLRISSSFGFGRHVLAPALLDFNARYAQID 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  +R+   I +  LI R+L   H    A+P YL     P  I
Sbjct: 126 VRLDLFDRLVDVAGEGFDLDVRIGDEI-AEHLIARRLAANHRVLCASPDYLAAHGTPRQI 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +   +           L              L  N     +Q+ + G GI L
Sbjct: 185 ADLAAHQCLAIKERDHPFGVWR--LTQRGETTSVKVGGALSTNHGEVAVQWALAGRGIVL 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              +       +  L R++ DV+ P+  V+  YP  L  + K++   +F+      W
Sbjct: 243 RSIWEAGPLLASGALKRVLPDVMQPA-NVWAVYPARLAASAKVRVCVDFLAQAFAQW 298


>gi|299771720|ref|YP_003733746.1| transcriptional regulator [Acinetobacter sp. DR1]
 gi|298701808|gb|ADI92373.1| transcriptional regulator [Acinetobacter sp. DR1]
          Length = 298

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 134/294 (45%), Gaps = 10/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +  +F  VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+
Sbjct: 1   MDRLQQFFIFSEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPD
Sbjct: 61  DGQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYSRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL   +   D+     DC +R+ + + SSSLI R +  + M   A+PHYL+    P 
Sbjct: 121 IHLQLNSSDDMTDLIEKGIDCVVRVGE-LDSSSLIARLIGHLVMVNCASPHYLEQYGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L +H LI +   + +    F +     +       S L VN+  + +     G GI
Sbjct: 180 QLGDLSQHKLINYAGAVGEKQGIFLY-----QNGTVMIDSALSVNNTEAYVAAACAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             LP Y V+D     +LV ++      S  +   YP       +L+ F N++  
Sbjct: 235 IQLPYYDVQDKIEQGSLVEVLSAHTAQSLPLNILYPNRSYIPKRLEIFMNWVKE 288


>gi|296103659|ref|YP_003613805.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058118|gb|ADF62856.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 310

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 138/296 (46%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + ++L +R  R L++T 
Sbjct: 1   MDRFDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVRLLHRTTRKLSVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAVYYERVIRLLADMEDAENSLSSAAITPRGRLRVDVPSPLARLILVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ  + + ++ +D+  D  DC +R    I   SLI R +  + +  YAAP YL+    P 
Sbjct: 121 IQFDMGVSDRVVDLIGDNVDCVLR-GGEITDQSLIARHVGDLQIGVYAAPSYLERLGPPS 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL+   H  + F       ++     +  +R I       L V+   + ++  + G 
Sbjct: 180 HPRELENTDHRRVGFLSSRTGKIDPLVLRSESER-IEITGSYVLAVDDGNAYIEAGLAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+   +     L+ + E        +Y  +P       +L+ F ++I  
Sbjct: 239 GVIALPVYMAAAHQARGALIPLFEHWRIAPMPLYLAFPPNRHVNARLRVFIDWIVE 294


>gi|114561733|ref|YP_749246.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333026|gb|ABI70408.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 303

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 143/289 (49%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA ++   +S+ISR+++ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAAREIGQPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +    + H++E  +  ++ +    SG LRIA  +   Q+++      F+ LYP+I+
Sbjct: 63  ALFFQHCDSISHEIEAAKATIENTHNDISGALRIAIPVSFSQDVIGHLCSSFMRLYPNIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+QSS L+ R L        A+P Y+K    P + 
Sbjct: 123 LDIQFTDNDVGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPGYIKKFSSPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL +HN I  G  +   +     L   +R I       ++VNS   + +  +   GIA+
Sbjct: 182 QELTQHNGILLGTTLSAPIWA---LGKGNRKIMATFKRKVRVNSASMVKRLALDDYGIAM 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L +   K      +LV I+++     F VY  Y    +    + AF +F
Sbjct: 239 LSNTSCKQELATGSLVPILQEWPMEPFKVYGVYSSRRQLASNISAFLDF 287


>gi|325121809|gb|ADY81332.1| carbonate dehydratase [Acinetobacter calcoaceticus PHEA-2]
          Length = 313

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+
Sbjct: 10  LHAMHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGA 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ +
Sbjct: 70  TYAERCRQVISMVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +        D+     D ++ L + +  S  + R++ TI     A+P YL+    P S +
Sbjct: 130 EYTTSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPE 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +    + P    D++ L T            L  ++   ++       GIALL
Sbjct: 190 DLKDHACLRL--VNPSITPDWHLLNTSGESYQIDIGGQLIADNPELLLDVVQQDMGIALL 247

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +   D   N  L  I+ +  +P   VY   P       K +A+ +++
Sbjct: 248 PMFSALDAVQNGRLCHILPEWRSPDIGVYTLLPSRHFIDAKTRAWLDWV 296


>gi|188535174|ref|YP_001908971.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis
           Et1/99]
 gi|188030216|emb|CAO98102.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis
           Et1/99]
          Length = 302

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/282 (25%), Positives = 128/282 (45%), Gaps = 5/282 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F     SGSFT AA +LHL+ S++S+ I+ LE  +G +LF R  R L LT+ G   +   
Sbjct: 14  FVASVESGSFTAAAGRLHLTSSAVSKSIARLEARLGSRLFERTTRSLVLTDAGQAFYDTC 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + V  +L   +  L      P+G+LR+A     G+  +   L +F   +P++Q+ L   +
Sbjct: 74  ARVLSELAEAESVLAAQRSIPAGRLRVAVPHTFGRLHVMPLLNDFCRQHPEMQLNLSFSD 133

Query: 131 KDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  +  D A+R+        SL  R L +  +   AAP YL     P ++ +L++H
Sbjct: 134 RFVDLFEEGVDVAVRIGGRGNYPPSLGVRYLGSERLIFCAAPDYLAQHGTPQTLTQLERH 193

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I + D I      ++ ++             + +    +     V G G+A +  +++
Sbjct: 194 QAIVY-DRIDGSTSPWHVVSPDGLITTRTVAHRMALADGEAQRSAVVAGLGVAQMATWLI 252

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           K+      LV ++     P   +Y  +P   +   K+ A  N
Sbjct: 253 KEPLARGELVTLLPQRAVPGLPLYVVWPRRKQLMPKVDALLN 294


>gi|91781567|ref|YP_556773.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91685521|gb|ABE28721.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 312

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 145/291 (49%), Gaps = 9/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +LE  +  +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQVLAELEEAEQAVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R++ T H+   A+P YLK    P ++ +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPGGLKSSSLIARQIATAHLVLCASPAYLKRHGTPKTVADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +  +    +      AT +          L VN   +     + G+GIA+L  
Sbjct: 187 ARHNYLQYAGVSALEIAP----ATGEASSRVRLTGNLIVNHLEAQRVIVLQGAGIAMLGT 242

Query: 247 YIVKDN---PNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++ D+     LV ++ +DV      +Y  Y      + K+++F +F+  +
Sbjct: 243 EVIGDDLAAGRLVPLLVDDVPPRELPIYVVYASRRHLSAKVRSFVDFLAER 293


>gi|33591652|ref|NP_879296.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33571295|emb|CAE44764.1| probable LysR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332381072|gb|AEE65919.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 328

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 137/296 (46%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AA+ LH+S++S+++ +  LE  + ++L  R  R +  T 
Sbjct: 1   MDRFDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNATA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    ++   LE  +  L  +S  P G+LR+         +L   L  F   YPD
Sbjct: 61  DGAAYYERVQQLLADLEDAETSLSGASATPRGRLRVDVPSPFASTILVPALPAFQARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L + ++++D+  +  DC IR    I + SL  R +  + +  YAAP YL     P 
Sbjct: 121 ILLHLGVSDREVDLIDENVDCVIR-GGQISNLSLAARHVGDLQLGVYAAPGYLARAGVPA 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              EL   +H ++ F     + +         +R     R + L ++   + +   + G 
Sbjct: 180 HPGELQDARHRIVGFSWSRARRLFPCAMQRADERIEVAGRHALL-LDEGNAYLAAGLAGM 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  +P Y+ +   +   L+R+  D       +Y  YP+    + KL+AF ++I  
Sbjct: 239 GVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHVSAKLRAFIDWIVE 294


>gi|126175236|ref|YP_001051385.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125998441|gb|ABN62516.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 313

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGH 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++
Sbjct: 65  LLYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGVMHIIPALPSFMAKHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLVASPGYIAQHGEPTRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  
Sbjct: 184 QLVDHNCLVY---QGEWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV +++D  +T    +   YP       K+ +F  FI
Sbjct: 241 LASYLMEDEITKGTLVPLLKDWQLTHHLPLQAVYPRRKHLAPKVSSFIEFI 291


>gi|312968156|ref|ZP_07782366.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Escherichia coli 2362-75]
 gi|312286981|gb|EFR14891.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Escherichia coli 2362-75]
 gi|323189333|gb|EFZ74616.1| hypothetical protein ECRN5871_2477 [Escherichia coli RN587/1]
          Length = 299

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL  +L EFL L+P 
Sbjct: 61  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPHLSEFLYLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARSLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|260901460|ref|ZP_05909855.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308107669|gb|EFO45209.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
          Length = 300

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 145/301 (48%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D   +FY +   GSF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G
Sbjct: 3   NTDDYIIFYHLVEQGSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    VY  + T +  +       SG ++I      G+ +L G + EF   YPDI 
Sbjct: 63  QSFFVHAKAVYQAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDIN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P   
Sbjct: 123 IDMELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL KHN + +        E      + D+         L  N+  ++    +LG G+  
Sbjct: 182 SELTKHNCLVYSYQETGAREWA--FKSEDKMYQVTVDGNLCTNNSSALRNVALLGQGVIY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298
           +P  +V ++    +L+++ ++       +Y  YP   +   K+K F + ++   ++++ +
Sbjct: 240 VPRVLVYEDLKQGSLIQLFKEETAKCLGIYAVYPYTRQQPEKIKIFIDHLYNSFQSQNHR 299

Query: 299 F 299
           F
Sbjct: 300 F 300


>gi|239500869|ref|ZP_04660179.1| transcriptional regulator [Acinetobacter baumannii AB900]
          Length = 298

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 10/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +  +F  VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+
Sbjct: 1   MDRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPD
Sbjct: 61  DGQRILPECQNLLLDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL   +   D+     DC +R+ + + +SSLI R +  + M   A+P YL++   P 
Sbjct: 121 IHLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASPQYLQDYGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L++H LI +   + +   +F +             S L VN+  + +     G GI
Sbjct: 180 QLNDLEQHKLINYAGAVGEKQGEFIYQGGT-----VMMDSALSVNNTEAYIAAACAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y V+D      LV ++     PS  +   YP       +L+ F +++
Sbjct: 235 IQLPYYDVQDKIEQGILVEVLSAYSAPSLPLNILYPNRSYIPKRLEVFMSWV 286


>gi|238761917|ref|ZP_04622891.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238700031|gb|EEP92774.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
          Length = 302

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 10/287 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA  GSFT AAE + L +SS+S++IS LE  +GI+L  R  R L LT  G 
Sbjct: 5   LQDMALFARVAECGSFTRAAEMVGLPKSSVSQRISQLEQSLGIRLLNRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ +
Sbjct: 65  RYLVHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLAQLATDFQRQYPDVLL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++ +  +D+  +  D A+R  KP Q SSLI R+L     +  A+P YL      +  +
Sbjct: 125 EVLVSDTMVDLVEEGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLVHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD H  I         +   +       P           ++ L   +  + G GI LL
Sbjct: 184 QLDTHRCIAHRAWQALILRREDEFYRWQVPALHV------TDNLLYARECALSGGGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P ++ ++   +  L+ ++         +Y  YP    N+  L  F +
Sbjct: 238 PAFLSREVVASRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFID 284


>gi|330504297|ref|YP_004381166.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918583|gb|AEB59414.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 299

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 125/289 (43%), Gaps = 8/289 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  V   GS T AAE L +S++ +SR ++ LE+  G++L +R  R L+LT  G ++  
Sbjct: 8   RVFVEVLERGSQTAAAEALDMSRAMVSRYLAELESWAGVRLLHRSTRRLSLTAAGEQMLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    E  Q   Q     P G LRI  +    Q  L   L+ F   YP + + L++
Sbjct: 68  QCREMLALAERMQALGQSVDDTPRGTLRITCSQSFAQAWLVHVLRAFTERYPQVSVDLLV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++     D A+R+   +   +LI R+L        A+P YL     P   ++L +
Sbjct: 128 GSEAVNLVEARIDLALRITNQL-DPNLIARRLAVCRSVVCASPDYLARHGAPQRPEDLTR 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN + +        E           I       L  N  + +++  + G+GI+L P Y 
Sbjct: 187 HNCLAYAYFGRSLWE----FEHQGEVIAVSVSGSLSANESMVLLEATLAGAGISLQPLYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           V        LV ++ D   P   ++  Y    +    ++   +FI  + 
Sbjct: 243 VDALVREGRLVHLLADYQPPQLGIHALYGTRRQMLPAMRLLLDFIAERL 291


>gi|167582358|ref|ZP_02375232.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 299

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 137/297 (46%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S+V PSG LR+     +G+ ++   L EFL  YP 
Sbjct: 61  DGAALYERCLRLIADVEETENLFRHSTVGPSGTLRVDMPGRIGRLIVAPALPEFLDRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVELGLTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H  + +       +  + W+   D          + VNS  + +  C+ G G+
Sbjct: 180 TPADLERHQPVNYASPSNGRIAPWEWVEG-DAVRRVALRGRVTVNSAEAYIACCLSGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V  +     LV ++ +       +   YP     + + + F  ++    R
Sbjct: 239 IQIPAYDVDAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAQWLEALLR 295


>gi|156935501|ref|YP_001439417.1| hypothetical protein ESA_03360 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533755|gb|ABU78581.1| hypothetical protein ESA_03360 [Cronobacter sakazakii ATCC BAA-894]
          Length = 305

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/292 (30%), Positives = 139/292 (47%), Gaps = 12/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA +GSFT AA++  L +SS+S++IS LE  VG++L  R  R L+LT  G 
Sbjct: 5   LQDMALFALVAETGSFTAAAQKAGLPKSSVSQRISQLEAHVGLRLLNRTTRKLSLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E+    E   + +Q     PSG+LRI +   +G  LL     EFL  YPDI +
Sbjct: 65  HYLVHCREMLDASERADLAIQRLRDNPSGRLRITSPAGIGATLLARMNAEFLAKYPDITL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +   D+ M+  D A+R  KP Q SSLI RK+     +  A+P YL          
Sbjct: 125 EVFISDDVRDLVMEGFDVALRTGKP-QDSSLIGRKIGHCPRYLLASPAYLARHPALTHPS 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIAL 243
           +L  H +I              WL   DR +    ++ + Q ++ L   +  + G+GI L
Sbjct: 184 QLVDHRVIVH-------RAWSEWLLQRDRELYRCHLNQMHQTDNLLYARESALAGAGITL 236

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP +++ D+     LV ++ +       +Y  YP    N   L ++ NF   
Sbjct: 237 LPAFLLDDSLAEGALVNVLPEWTVTGNDLYLVYPGRKLNAPALVSYINFALE 288


>gi|94310330|ref|YP_583540.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354182|gb|ABF08271.1| transcriptional regulator, LysR-family [Cupriavidus metallidurans
           CH34]
          Length = 362

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS
Sbjct: 47  FKQLETFVSVASRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGS 106

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + + L   +  +    VK SG LRI      G+  +   +  F+  +PD+ +
Sbjct: 107 AFLEDCQRILNDLHNAEASVSAGGVKASGHLRITAPAGFGRKHVAPLVPLFIESHPDVTL 166

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  DCAIRL   +  SSL+  +L        A+P YL     P   +
Sbjct: 167 TLDLSDRVVDLVNEGFDCAIRLGD-LPDSSLVSIRLAENRRVVVASPEYLARAGTPTQPE 225

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL +HN + FG           W+   D      ++   ++      + ++C+ G G+A 
Sbjct: 226 ELARHNCLAFG---ASANVQRGWVFQQDGRATTVKVGGNMECTDGAVLHEWCLGGYGLAW 282

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V     +  LV ++++   P   ++  +P+      +++ F + +
Sbjct: 283 RSWWEVGQEIASGRLVTVLDEFQAPPIGIHAVFPQRKHLPLRVRLFIDHL 332


>gi|332715986|ref|YP_004443452.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062671|gb|ADY66361.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 297

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA +   S++ +S+ +  LE ++G  L  R  R  +LTE
Sbjct: 1   MDTLTRIRAFIDVVEAEGFSAAARKTGRSKALLSKYVRELEDDLGALLLNRTTRQFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  S++  +++     ++E +    GKLRI+         +  +L +F    P+
Sbjct: 61  AGHTYYRTASDILKEIDNLADLVREKNADLKGKLRISVPRTFIDADVGQSLIDFAKENPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++ D++ +D+  +  D AIR+ + ++ S LI RK+    ++A A   ++       
Sbjct: 121 LSLEIVADDRFVDLIEEGFDLAIRITR-LEDSGLIARKISDFRVYAVATADFVARHGPLN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+  +   I   D   +      +L              ++VNS  + ++    G GI
Sbjct: 180 GPQDFSRVPFII--DTNTRFHNTVRYLEADGGSNSVTISGPIEVNSPQATLRAARAGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A++PD+I +    +  LV + +D I+    +Y  YP       K+++F +++
Sbjct: 238 AMVPDFIARPFIQSGELVTLFDDYISKDRGIYAVYPHRRYLPAKVRSFVDYL 289


>gi|158423621|ref|YP_001524913.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158330510|dbj|BAF87995.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 324

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 133/295 (45%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G+F+ A+  L + ++++++ +  LE  +  KL +R  R +T+T 
Sbjct: 1   MDQLAAMRCFIGVVEAGTFSRASTVLRVPKATLTKNVQALEAHLRTKLLHRTTRRVTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE     +  S   P G+LR+  +  L   LL   L +F   YPD
Sbjct: 61  DGEAYYERAVRLLADLEDLDSTMAVSQANPQGRLRVDISAALATMLLIPALPDFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + +  +D+  +  DC IR  + +   SL+ R++  +H    AAP YL+    P 
Sbjct: 121 IQIDLGVTDDVVDLLGENVDCVIRAGQ-LADQSLVARRIGEMHSVLVAAPGYLEAHGTPA 179

Query: 182 SIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L+  H  + +                 D  +       L V+   + +   + G G
Sbjct: 180 HPLDLETSHRAVGYFKPRMGRSLSLTLSKDADEAVEVNGRYMLAVSDSNAYITAAMAGIG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA++P ++ +   ++  LV ++ +   P+  +Y  +P +   + +L+ F +++  
Sbjct: 240 IAMMPVFMARPHIESGALVPVLTEWRAPAKPIYAVFPPSRHLSNRLRVFVDWVAA 294


>gi|293407138|ref|ZP_06651062.1| LysR family transcriptional regulator YhjC [Escherichia coli
           FVEC1412]
 gi|298382888|ref|ZP_06992483.1| LysR family transcriptional regulator YhjC [Escherichia coli
           FVEC1302]
 gi|291425949|gb|EFE98983.1| LysR family transcriptional regulator YhjC [Escherichia coli
           FVEC1412]
 gi|298276724|gb|EFI18242.1| LysR family transcriptional regulator YhjC [Escherichia coli
           FVEC1302]
          Length = 299

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 138/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 61  EGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR     +   +I R L  + +   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGASPED-GVIARPLGKLTVVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSRENYLAAGLAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++    +++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLIYPQRRELSRRVNLFMQWLAGVMKEY 297


>gi|238752648|ref|ZP_04614120.1| Transcriptional regulator, LysR family [Yersinia rohdei ATCC 43380]
 gi|238709162|gb|EEQ01408.1| Transcriptional regulator, LysR family [Yersinia rohdei ATCC 43380]
          Length = 302

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 129/287 (44%), Gaps = 10/287 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA  GSFT AAE + L +SS+S++IS LE  +GI+L  R  R L LT  G 
Sbjct: 5   LQDMALFSRVAECGSFTRAAEMVGLPKSSVSQRISQLEKNLGIRLLNRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + LQ     PSG+LRI+    LG  LL     +F   YPD+ +
Sbjct: 65  RYLVHCQEMLQAAERADLALQRLKDNPSGRLRISIPAGLGATLLARLAADFQQRYPDVLL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++ +  +D+  +  D A+R  KP Q SSLI R+L     +  A+P YL         +
Sbjct: 125 EVMVSDTKVDLVEEGFDVALRTGKP-QDSSLIGRQLGYAPRYLLASPAYLAQHPPLTHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD H  I         +   +       P           N+ L   +  + G GI LL
Sbjct: 184 QLDTHRCIAHRAWQALILRRDDEFYRWQVPALHV------TNNLLYARECALSGGGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P ++ ++   N  L+ ++         +Y  YP    N+  L  F +
Sbjct: 238 PAFLSREVVINRQLIAVLPQWQAEGNELYLVYPSRKLNSPALSCFID 284


>gi|13472321|ref|NP_103888.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023067|dbj|BAB49674.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 304

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 137/297 (46%), Gaps = 11/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   +  F     +GSFT A E+LH+++S+I + ++ LE  +G++L  R  R L  T 
Sbjct: 3   PIDLQGIVAFVQAVEAGSFTGAGERLHVTKSAIGKSVAQLEQRLGVRLLNRTTRSLRPTS 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +        ++E  Q  L      PSG+LR+   +  G+  +   L E    +P+
Sbjct: 63  EGVSYYEACVRALAEIEAAQSLLAARRHVPSGRLRVDVPLAFGRRCVAPVLFEISRKFPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  +++ +D+  +  D AIR+ +   S SL  R++        AAP YL+    P 
Sbjct: 123 LTVEISFNDRRVDLIEEGIDLAIRMGELDDSLSLAARRIYAQRSAICAAPAYLEEHGRPR 182

Query: 182 SIQELDKHNLITFGD---LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           S+++L  H++I +G    + P+ +   +   T   P      + L +     ++   + G
Sbjct: 183 SVEDLAHHSVIGYGREGVVSPRVIRHGDGRQTTFAPK-----ARLVLGHGEPMLDAALAG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIA LP ++  D   + +L  ++ D    +  V+  +P     T K++   + +  
Sbjct: 238 CGIAFLPTWLAADSLRHGDLEMVLSDCEVENIAVHAVWPVTRALTPKVRVVVDALVE 294


>gi|13476319|ref|NP_107889.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14027080|dbj|BAB54034.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 299

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  V  +GSFT AA  L + ++++SR+++ LE EVG++L  R  R L LT+ G
Sbjct: 3   DLNDVVVFARVVEAGSFTAAARLLAMPKTTVSRRVAALEREVGVRLLQRTTRSLNLTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +  +S+    +E   + L E+  +PSG +RI+  +  G + L   + +FL LYP   
Sbjct: 63  RLYYEQSSQGLRTIEEANLRLAEARAEPSGTIRISAPVGFGGHFLIRAVVDFLALYPKTN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L +  +++  D  D A R  + ++ S+LI RKL + H    A+  YL     P   
Sbjct: 123 VELRLTDDKLNLIEDGIDLAFRTGR-LEDSTLIARKLGSTHRLLCASHDYLARYGIPEGP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +  G   P        L                 N   ++    + G GIA 
Sbjct: 182 ADLARHRCVIAG---PSASGAHWVLDGPQGQETVVVAGRFAANEMQAVAAAALAGFGIAQ 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP  +     +   L R+++   TP+  ++  +P +   +  +KAF +    +
Sbjct: 239 LPQPMADGLINEGRLRRVLDGYTTPAGGLHVLFPSSRHLSPLVKAFIDLAVER 291


>gi|221197713|ref|ZP_03570759.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221204729|ref|ZP_03577746.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221214924|ref|ZP_03587892.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221165151|gb|EED97629.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221175586|gb|EEE08016.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181645|gb|EEE14046.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 313

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAVARYRERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+  +  D AI + + +  S L+ ++L   +    A+  Y+     P 
Sbjct: 121 VHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASTAYVAAHGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
              +L +H  +    + P    D   L   D     P  +   +VN   ++      G G
Sbjct: 181 RPADLAQHVCLGM--VAPGFHYDEWTLTGPDGDESVPVTAPPFRVNVAEALAVAVREGMG 238

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  LP Y       +  +VR+M +  +    +Y  Y        K++ + +F+  + 
Sbjct: 239 IGGLPLYSAIGGLRSGQIVRVMPEYRSHVMNIYALYASRQYLDAKIRTWVDFLRDEL 295


>gi|222035231|emb|CAP77976.1| Uncharacterized HTH-type transcriptional regulator [Escherichia
           coli LF82]
          Length = 299

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 61  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARSLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|171320095|ref|ZP_02909162.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171094661|gb|EDT39708.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 305

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 136/286 (47%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   +
Sbjct: 7   MRVFTRIVETGSFTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRISLTEDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  ++E  +  + ++   P G+L++     + + ++   L EFL  +P+I I+L 
Sbjct: 67  ERCVGVLREIEDMEAAVSQARNVPRGRLKVNLPPAMAKQIMVPALPEFLAAHPNISIELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S +I R++ ++     AAP YL  C  P ++ EL 
Sbjct: 127 VTDRQIDLVGEGVDCVVRIGA-LDDSGMIARRIGSLTTCTCAAPAYLDRCGAPETVDELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I+           ++++   +  I +     + VN   + ++  V G G+     Y
Sbjct: 186 QHVAISHISADTGRPRPWDYVVDGETRIVQ-MCGTVAVNDADTYIECGVAGIGLIKTSLY 244

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V+    +  L  ++ D   P   +   YP       KLK F +++
Sbjct: 245 LVEPYLKSGRLREVLTDFNAPPRPISILYPPNRHTPVKLKIFVDWL 290


>gi|78066066|ref|YP_368835.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966811|gb|ABB08191.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 313

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 136/297 (45%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+  +  D AI + + +  S L+ ++L   +    A+ +Y++    P 
Sbjct: 121 VHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASRNYVEAHGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSG 240
              +L +H  +    + P    D   LA  +     P      +VN   ++      G G
Sbjct: 181 RPADLAQHVCLGM--VAPGFQFDEWALAGPNGDEVVPITAPPFRVNVAEALAVAVREGMG 238

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  LP Y       + ++VR+M +  +    +Y  YP       K++ + +F+  + 
Sbjct: 239 IGGLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLRDEL 295


>gi|21232104|ref|NP_638021.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767769|ref|YP_242531.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113850|gb|AAM41945.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573101|gb|AAY48511.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 310

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 128/294 (43%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V   GS T AA  L LS +  S+++  LE ++G++L +R  R +  T 
Sbjct: 1   MDRLGDIALFLRVLDLGSITAAAHSLDLSVAVASQRLKRLERDLGVRLLHRTTRRMHPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L+    +L+ES+    G LR+  +   GQ  +   L EF   +P 
Sbjct: 61  EGQQLAARGRVLVDDLDALADDLRESAQDVGGTLRVTLSASFGQQYISPLLPEFQARHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I   L +  +D+     D AIR+  P++ S L+ R++        A+P YL+    P 
Sbjct: 121 LRISAHLSDDLVDLVKQGFDLAIRIG-PLEDSGLVARRIAPNRRTLSASPAYLQRHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +EL +H  +       +  + +         +     S  + N    +    + G GI
Sbjct: 180 TPEELAQHAGVLLMGRDGR-QDVWTLQTPEGGQVRVRMQSRFESNFGELMRDAVIAGQGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+   + + ++     LV +M D   P+  +    P       +++AF +F+  
Sbjct: 239 AVHSYWHIAEDLRAGRLVEVMPDYPPPTSQISAVMPARQLQPPRVRAFVDFLLE 292


>gi|260462991|ref|ZP_05811194.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031112|gb|EEW32385.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 297

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L  F  VAR  SFT AA QL +SQS++S  +  LE  +G++L  R  R ++ TE G
Sbjct: 5   NLNELTAFLAVAREKSFTRAAAQLGVSQSALSHTVRALEERLGVRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++ R       ++E     L     KP+G +RI         +L   L +FL  +PDI+
Sbjct: 65  ERMVRSVGPRLDEIEAELAALSALREKPAGTIRITAGEHSADVILWPALAKFLPDHPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+D    DI  +  D  +RL + +    +  R    + M    +P Y     +P + 
Sbjct: 125 VEIIVDYSLTDIVAERFDAGVRLGEQVARDMIAVRIGPDMRMAVVGSPAYFAIHPKPRTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  HN I     +P     + W      R +       L  N+    M   + G G+A
Sbjct: 185 QDLTNHNCINL--RLPTYGGLYAWEFEKAGRELKVRVEGQLVFNTSALRMNAVLAGLGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+  V     +  LVR++ D   P    +  YP   + T       + +
Sbjct: 243 YLPEGQVTAHLADGRLVRVLADWCAPFPGYHLYYPSRRQATPAFSLLVDAL 293


>gi|237800669|ref|ZP_04589130.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023528|gb|EGI03585.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 305

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 135/295 (45%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFAKAAESLHVPRASVTIMIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +       ++P G LRI   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYLRCVSLLADLEEAEAAFSSKGIEPKGLLRIDVPVSLGRMIVIPALPEFTRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YLK    PL
Sbjct: 121 IRLEIGMSDRPVDLIREGVDCVLRAGAAL-DDALVARPLGSLTQITCASREYLKRYGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            + +L +H +I +     +  + +      D  + +  +   + V+S    +  C  G G
Sbjct: 180 DLHDLRQHQVIEY--FATRASKRYGLEFMADGELDDYGMERSIAVSSAEGYVAACDAGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  +P Y V        L+ ++ +   P   +   YP   + + +++ F +++  
Sbjct: 238 LIQVPRYHVAAQLRTGALIEVLREYRPPPLPLTALYPPHRQLSRRVRVFVDWLVE 292


>gi|206559844|ref|YP_002230608.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035885|emb|CAR51776.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 302

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  L  F  +  +GS + AA +L LS S +S++++ LE+ +G++L +R  R  TLT+ G
Sbjct: 6   DFPALDTFARIVSAGSLSAAARELDLSLSVVSKRLTHLESRLGVRLLHRTTRQQTLTDDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  +++     SG LR+    +LG+  +   +  F   +P + 
Sbjct: 66  AQFHAQVLRILAEVEHAETLMRDRRGTVSGVLRVTAPGELGRLRIAPLIAAFQQRHPQLT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P YL     P   
Sbjct: 126 VQLMLTDTVVDLLAADIDVAVRIGN-LADSTMIARELAPNHRVLCASPGYLAAHGWPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I  GD                  +     + L  N   +     + G+GIAL
Sbjct: 185 AELRAHRCIVMGDQPRAEWR----FDGAQGDVAVEVTATLLTNDGGAARTLALEGAGIAL 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR-DWK 298
              + V    D   LVR++     P+  ++  YP     + +++ F +F+  + R  W+
Sbjct: 241 KSIWDVGADLDAGRLVRVLPAFEAPAAPLHAVYPGGRHVSLRVRTFVDFLREQLRHAWR 299


>gi|330985317|gb|EGH83420.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 305

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 136/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMIVIPALPEFARRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+ C  PL
Sbjct: 121 IRLEIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLDSLTQITCASRDYLQRCGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H +I +            ++A     + +     + VNS    +  C  G G+
Sbjct: 180 NLPDLAQHQVIEYFSTSTGKRYGLEFMAG-GVEVDQALACSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V     +  LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVAAQLRSGVLVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWLVE 292


>gi|188534836|ref|YP_001908633.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188029878|emb|CAO97762.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 304

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 129/285 (45%), Gaps = 8/285 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  + + GS T AAE L +S++ ++R ++ +E   G +L +R  R L+LT  G      
Sbjct: 9   VFITIVQRGSLTAAAETLDMSRAMVTRYLTQMENWSGARLLHRSTRRLSLTPAGEHALTR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++       +   Q      SG LR++ ++ LGQ+L+   +  F   +PD++I L + 
Sbjct: 69  CQQMMALAAEIEHSNQPEGEALSGLLRVSCSLSLGQSLVMPAIHAFQQRHPDVRIDLHIS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +++  +  D A+R+   ++  +LI R L T      AAP YL +   PL+ Q+L +H
Sbjct: 129 NQRVNLIEERIDLALRITSQLE-PNLIARPLNTCRSVICAAPPYLAHAGTPLTPQQLTQH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N +T+                 +          L  N  + ++     GSGI++ P Y  
Sbjct: 188 NCLTYSHFGKSLWH----FTRGEEKETVAVSGNLSANDSVMLLAATQTGSGISMQPTYSA 243

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                N  L+ ++ +       +Y  Y      + +L+A  +F+ 
Sbjct: 244 GPLLANGQLIALLPEYQPEDLGIYAIYTSRQHQSPRLRALLDFLV 288


>gi|170694898|ref|ZP_02886048.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140258|gb|EDT08436.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 304

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 129/286 (45%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF+ AA +L L Q ++S+ ++ LE  +G +L  R  RGL  T  G + +
Sbjct: 7   METFVTVVDAGSFSAAARRLKLGQPAVSKAVAQLEERLGARLLLRSTRGLAPTAAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  H+ +  +  ++ESS   SG+LRI   +   +  +   LK FL  +P++ I ++
Sbjct: 67  EHALRAIHEADQAEQAVRESSDGLSGQLRIGAAVTFARLHVLPALKSFLHQHPNLSIDIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  +  D A+R+   +  SS+  R++ +        P Y      P +  +L 
Sbjct: 127 LDDRSVDLLEEGVDVALRMG-TLDDSSMTARRIASGRRVVVGTPSYFAEAGVPQTPVDLG 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + +   +    E + +               + VN+   +    +   G+A+  ++
Sbjct: 186 RHQAVVYS--VRGGGESWLFSRDDGSDSTVTLSGRISVNAAEGMRTAVLAHMGLAVASEW 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +      +  +  ++ D   P+  ++  +P     T K +AF  F+
Sbjct: 244 MFAPELADGTVQAVLTDWTLPTIDLWAVFPAGRMTTAKARAFVAFV 289


>gi|113866246|ref|YP_724735.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113525022|emb|CAJ91367.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 304

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 124/302 (41%), Gaps = 10/302 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               + + VF  V   GSF+ AA  L ++ S++SR +S LE  +G  L  R  R   LTE
Sbjct: 3   DMPLNAMAVFARVVECGSFSAAALDLGMTPSAVSRHVSRLEATLGASLLQRTTRAFALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  ++   + +            E    P G LR++  +  GQ  L   L   L  YP 
Sbjct: 63  LGQSVYAACARMTAAARDVTALAGEHGGTPHGVLRVSAPVSFGQAWLAPRLPALLARYPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +QL L ++ +D+  +  D A+R+ + + +  L  R L  +     A+P YL     P 
Sbjct: 123 LDLQLTLADRMVDLVEEGMDVAVRIAREL-APGLAARPLREVRYRLVASPGYLARHGTPA 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L     +  G       E +           E RI   L +N+ L+IM      +G
Sbjct: 182 TPADLPAARCLYLG--YGNFGERWAMRHQAGGEKVEVRIPPRLTLNNSLAIMSMVERDAG 239

Query: 241 IALLPDY---IVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I L+PD+      D   +V ++ D         T Y  Y        K++AF + +   A
Sbjct: 240 IGLVPDFSLGDALDQGRVVTVLADWDILEPYIGTAYAVYTPTRHVPPKVRAFVDHLAGTA 299

Query: 295 RD 296
            D
Sbjct: 300 DD 301


>gi|257095389|ref|YP_003169030.1| LysR family transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047913|gb|ACV37101.1| transcriptional regulator, LysR family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 306

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 126/290 (43%), Gaps = 9/290 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +++ F   A  GS + AA    ++ + I R++  LE  +G+KL  R  R L+LT 
Sbjct: 1   MDQIKQIQAFVDSATRGSLSAAARAESVTPAVIGRRLDALEARLGVKLLLRTTRKLSLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G         + ++L   +  +    ++ SG L+++     G+  L   +  F+   P 
Sbjct: 61  EGQAFLEDCQRILNELANAEAAVSLGGIRASGHLKVSAPAGFGRRHLAPLVAAFMDANPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ +D+  +  DCA+R+   +  SSL   KL  +     A+P YL     P 
Sbjct: 121 VTVRLDLTDRLVDLLNEGVDCAVRIGD-MADSSLASSKLGEMRRVVVASPVYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  HN ++        + +       +R +        + N    +  + + G G+
Sbjct: 180 TPADLAHHNCLSLDQQRGWTLRESPAGEGANRKVS----GSFECNDGAVLHAWALAGKGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           A    + V D+     LV +++D  T    +Y  +P+      +++ F +
Sbjct: 236 AWRSMWEVGDDLRSGRLVSLLDDYATAPVGIYAVFPQRRHLPLRVRLFID 285


>gi|293394768|ref|ZP_06639059.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422719|gb|EFE95957.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 300

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 137/293 (46%), Gaps = 8/293 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D  D +R+F  V    SFT AA+ L L +S+++  I  LE  + ++L  R  R ++ 
Sbjct: 1   MAMDRIDAMRLFTRVVEQRSFTQAAQDLALPRSTVTDAIKQLEARLKVRLLQRTTRHVSP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G   ++    +   +E  ++    +  KP G LRI     L ++ L   L +FL  Y
Sbjct: 61  TLDGEAYYQRCLRILADIEDAEMAFAGA--KPRGLLRIDVHGTLARHFLLPGLPDFLARY 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI++ +   ++ ID   +  DC +R+ K ++ S ++ R +  +     A+P YL+    
Sbjct: 119 PDIELFMSEGDRLIDPLREGVDCVVRVGK-LKDSDMVARHIGALSETTCASPDYLQRFGV 177

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S++ L  H +I F       +    +L    +P      + L V+S  S++    LG 
Sbjct: 178 PDSLEALANHRMIGFRSSATGSLMPLEFLVD-GKPRSITLPTTLTVSSGDSMVAAARLGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           GI  +P Y ++ +    +L+ ++         V   YP   + + +++ F ++
Sbjct: 237 GIIQVPHYHLQQDLARGSLLPLLAQYPPTPMPVSLLYPRNRQLSPRVRVFIDW 289


>gi|56475859|ref|YP_157448.1| transcription regulator protein [Aromatoleum aromaticum EbN1]
 gi|56311902|emb|CAI06547.1| transcription regulator protein [Aromatoleum aromaticum EbN1]
          Length = 299

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 129/292 (44%), Gaps = 10/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R + LT 
Sbjct: 1   MDTFKQVESFVSVASRGSLSAAARAEGVTPAIIGRRLDALEQRLGVKLLTRTTRSIALTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        + H L   +  +    VK SG +R++     G+  +   +++FL + P+
Sbjct: 61  EGAAFLEDCQRILHDLANAEASVSLGGVKASGHIRVSAPAGFGRIHVAPLMQDFLEMNPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ +D+  +  DCAIR+ + +  SSL+  +L        A+P YL     P+
Sbjct: 121 VSCMMDLSDRVVDLVNEGIDCAIRIGE-LPDSSLVSIRLAENRRVVVASPAYLARFGTPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  ++ G        D +        I        + N    + ++ + G G+
Sbjct: 180 VPQDLSGHKCLSLGQQRGWLFRDED-----GETITLKVGGRFECNDGAVLHEWALAGHGL 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A    + V  +     LV +++    P+  +Y  +P+      +++ F + +
Sbjct: 235 AWRSLWEVDADLRAGRLVSVLDTFAAPTTGIYAVFPQRKHLALRVRLFIDHL 286


>gi|154246658|ref|YP_001417616.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160743|gb|ABS67959.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 310

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 140/296 (47%), Gaps = 9/296 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF   A +  F+ A  +L LS S++S+ ++ LE  +G  LF R  R L LT +G+  
Sbjct: 7   EMVVFVAAAETQGFSAAGRKLGLSPSAVSKLVTRLEDRLGTPLFVRSTRQLQLTAEGALY 66

Query: 67  HRVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +  +++ T+  +   +   P G+LRI+ ++  G+  +   +  FL LYP +++ 
Sbjct: 67  LERARRILAEIDDTERLIATGAGAVPRGRLRISASVAFGEMCVLPRVPRFLELYPQVELD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  ID+  +  D AIR  + ++ S+L  RKL  I     A+P YL+    P   ++
Sbjct: 127 ISLSDAVIDLVDERTDIAIRTGR-LRDSTLKARKLFEIGRVIVASPAYLERHGVPQHPED 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALL 244
           L +H  + F     +  ED+ +            +S   + NS + + +  + G+G+A L
Sbjct: 186 LARHLCLCFN--FRRSPEDWPFRDPESGKAFTQAVSGTALGNSGVVLRRLALDGAGLARL 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             Y V+ +     LV ++E+        ++  Y        +++AF +F+    R 
Sbjct: 244 GRYHVRGDLAAGTLVSVLEEFNAGDIEPIHAVYVGHAHLAARIRAFVDFLADAIRQ 299


>gi|318605989|emb|CBY27487.1| transcriptional regulator, LysR family [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 310

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 132/298 (44%), Gaps = 10/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  +GSF+  A QL +S S+ISR +S LE  +  +L  R  R L L+E G 
Sbjct: 10  LSEMAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++ +  + + +   +      + S +P G +R++    +G+ ++  ++ EFL  Y  I +
Sbjct: 70  EVFKRCNAMLNAANSVMEISGQYSQEPEGLIRVSVPKAVGRFVVHPHIPEFLQRYSKIDV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QLILD++ +D   +  D  IR+        ++ R+L+ I     A P YL     PL   
Sbjct: 130 QLILDDRYVDFIDENVDLVIRITNH-PPPGMVGRQLMNIEHLLCATPEYLSAQGTPLYPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ I  G+        F       + I          N     +   +   GI  L
Sbjct: 189 DLAQHSCIYLGETPGDARWKFR---QGTKAITVAVKGRYAANHTGVRLDAVLQHIGIGSL 245

Query: 245 PDYIVK---DNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P +  +       LV+++ +     + S  ++  YP       KL+ F ++I  + RD
Sbjct: 246 PYFTARTALQQGQLVQVLPEWRFISSYSGGLWLIYPPTRYLPAKLRVFIDYIVGRLRD 303


>gi|160897802|ref|YP_001563384.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363386|gb|ABX34999.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 326

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 144/296 (48%), Gaps = 8/296 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF VVAR   F  AAE+L  S + +S++I  LE E+G+KL +R  R + +TE+G +
Sbjct: 30  EDLRVFTVVARKSGFAAAAEELGASPAYVSKRIRLLEQELGVKLLHRTTRRVAVTEEGER 89

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +   ++    E+  +  +P G LR++++   G++++   L   +  +P +Q++
Sbjct: 90  VFHWAQRILDDMDQLMQEVAITRSEPRGLLRVSSSFGFGRHVIAPALSRLVERHPGLQVR 149

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R+L   H    AAP YL     P +  E
Sbjct: 150 LDVFDRLVDVAGEGFDLDVRVGDEI-APHLIARRLADNHRVLCAAPAYLARRGTPRTPAE 208

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ +   +               ++ +       L  N+   ++Q+ V G GIAL  
Sbjct: 209 LSAHDCLAIKERDQAFGVWRLRAGAAEQSVKV--TGPLSANNGEMVVQWAVDGRGIALRS 266

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDW 297
            + V  +     LV+++ +    +  V+  YP  L+ + K++    F+     ++W
Sbjct: 267 LWDVGAHLQAGRLVQLLPEWRQEA-NVWAVYPTRLQLSAKVRVCVEFLQEHFQQEW 321


>gi|90577525|ref|ZP_01233336.1| hypothetical transcriptional regulator [Vibrio angustum S14]
 gi|90440611|gb|EAS65791.1| hypothetical transcriptional regulator [Vibrio angustum S14]
          Length = 306

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 149/300 (49%), Gaps = 17/300 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + +++F  V    SFT AA +L L++S++SR+++ LE  +G+KL  R  R L LT +
Sbjct: 10  FDLNTIKIFARVVEIQSFTQAAAELELTKSTVSRKVAELERYLGVKLLTRSTRQLVLTAE 69

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R  S +   L+ +++E+  S     G L +   +++G+ ++   +K F+ L+P++
Sbjct: 70  GDTFYRSCSHILELLQQSELEVTASHDLICGTLNMVMPVEVGKGIIGDCIKAFMKLHPNL 129

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L L N+ +D+  +  D  I++ + I+ SSLI R          A+P Y++    P +
Sbjct: 130 KIHLELSNRKVDLIKEGFDIMIQVGE-IEDSSLIVRTFHHTTRVLVASPKYIEQYGLPQN 188

Query: 183 IQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +L   H  I     +    +D          + E      +VN+  + +  C+ G GI
Sbjct: 189 LSDLKIPHQQIRMISNVSTSNKD----------VLEKLPYRFKVNTLSAALDMCLEGFGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +P+++ +   +   L+ I+  +        V F YPE      +L+AF +F   + +D
Sbjct: 239 TYIPEFLCRNLINEGKLIHILPSLYKSQIPIPVSFIYPERDLMPRRLRAFIDFTITQFQD 298


>gi|168229952|ref|ZP_02655010.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168241087|ref|ZP_02666019.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448912|ref|YP_002045592.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194471408|ref|ZP_03077392.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197249654|ref|YP_002146485.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194407216|gb|ACF67435.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457772|gb|EDX46611.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197213357|gb|ACH50754.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205335563|gb|EDZ22327.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339551|gb|EDZ26315.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 302

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 146/300 (48%), Gaps = 14/300 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +  + + ++  V   GSF  AAE L L + +++R +  LE ++G+KL +R  R +++
Sbjct: 1   MQLNMLEAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSM 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G + ++    +  +L+  +     S+  P G+LR+   I L + ++   L +F   Y
Sbjct: 61  TDEGEEFYQRCLSLLSELDDVRRLF-SSTQPPKGRLRLDVPITLARAVIIPALGDFQNRY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI+I L   ++ ID+  +  DC IRL + +  SS + R+L T  M   AAP YL     
Sbjct: 120 PDIEIVLGTSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGT 178

Query: 180 PLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVL 237
           P SI EL K H  + F       ++   W  TVD  I   +I S + V++  + +   + 
Sbjct: 179 PHSIDELMKSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKIPSSILVDNSEAFLSCGLA 236

Query: 238 GSGI--ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G G+   L P    +I   +  L  I+ D   P   V   YP+      K++ F +++  
Sbjct: 237 GLGVLHGLRPSLAPFIA--SGELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWLCE 294


>gi|241764668|ref|ZP_04762681.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241365888|gb|EER60531.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 319

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR++S LE ++G++L  R  R L+LT+ G
Sbjct: 7   DLNDMLYFAEVVERGGFAAAGRALGIPKSRLSRRVSELEAQLGVRLLQRTTRKLSLTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +    +     + +   +P G +R++  + L Q +L   + EFL  +P ++
Sbjct: 67  EAYLRHCQAMRESAQAAADTVAQVQTEPQGTVRLSCPVTLAQTVLAELMPEFLARWPRVR 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ + N+ ++   +  D A+R+R  +  S S++ ++L        A+P  L     P +
Sbjct: 127 IEMQVSNRAVNPVEEGVDVALRVRPSLDDSGSMVVKRLDDATQILVASPDLLARQGTPRT 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L + + I    +  + M     +    R            +  L++    + G+G+ 
Sbjct: 187 LEDLTRLDSIAMSAVDGRSM--LRLIGEGGREQTLHHHPRYVADDLLTLKFAALAGTGMC 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY+ ++      LV ++     P   V+  +P     +  ++ F +F+
Sbjct: 245 WLPDYMCQEEVRAGRLVHLLPGWAPPRGIVHAVFPSRRGLSPAVRRFLDFL 295


>gi|239501455|ref|ZP_04660765.1| transcriptional regulator [Acinetobacter baumannii AB900]
          Length = 300

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA   S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR  + + +S+LI R L    +   A+P YLK  
Sbjct: 121 KYPDIQIEISISNRNVDLIAEGFDLAIRQGQ-LPNSTLIARPLEQAPLKLVASPAYLKRM 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYC 235
             P + +EL  H  ITF   +P   +   W    D    +  P    L     + ++   
Sbjct: 180 GIPKNFEELKHHQCITFE--LPSSGKITPWFLKNDNEEIQWIPTNRILVKEDIVGVVTLA 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G GI    D+IV +      L  I+      +      Y +    +   +A  +F+
Sbjct: 238 ESGLGICQSYDFIVNEKIQQGKLQPILNTYAGHTRPFSLLYAQHKHMSSATRALIDFL 295


>gi|227819830|ref|YP_002823801.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227338829|gb|ACP23048.1| putative LysR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 299

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D   +RVF  VA+  SFT AA QL ++  +++R +S LE  +G++L  R  R ++LT
Sbjct: 1   MS-DLSDIRVFLAVAQQRSFTAAARQLSMTPPTVTRAVSALEESLGVQLLLRTTRQVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+        +  + +  + +L+E     +G +RI   + +GQ +L   +  F   +P
Sbjct: 60  SAGAVYAARVEPLIRQFDQVREDLREEHGDVAGLIRINAPLSIGQQILPDIVSGFRAEFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L L ++ IDI  +  D A+R+ +P +  S I RK+  +     A+P +L     P
Sbjct: 120 RVSVSLSLTDRFIDIVSERFDLALRVSEPPRDKSTIWRKVCRVRRILVASPGHLAAFGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I + +   + + +   L    R         L  N+   I +    G G
Sbjct: 180 EMPDDLHRHACIAYDE---EAIAESWELTNGGRTRKALAGKVLAANNGELIARLAEDGQG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +ALLP +IV D      L +++ +   P   +   YP   K   ++  F +F
Sbjct: 237 VALLPHFIVDDALSRGTLKQVLAEWEPPELWLTLYYPPYEKLPMRVARFSDF 288


>gi|239814919|ref|YP_002943829.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801496|gb|ACS18563.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 298

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 12/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++LR F  VA +G  + AA +L +S+S +SR++S LE E+G++L  R  RG  LTE 
Sbjct: 1   MDIEELRTFVEVADAGGVSSAALRLGVSKSIVSRRLSRLEEELGVQLLARSTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      + V  +++  +  +  +     G+LR+A    LG       L E    +P +
Sbjct: 61  GATFRDHAARVCAEIDVAREAILPA-GDLRGRLRVAAPFSLGPTHFAPILAEMARRHPGL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQ    ++ +D+  +  DCAIR+   +  S+LI R++  +H    A+P Y+K    P +
Sbjct: 120 HIQTCYSDRFVDLIAEGYDCAIRIGY-LPDSNLIARRIGPVHGKLVASPAYVKAHGSPET 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H  +  G            L   D+ I        + ++  +++     G GIA
Sbjct: 179 PEELLAHQALMQGTEAWH-------LTDGDKTITVRPQGRFKADNGTALVAAATAGLGIA 231

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD++  ++     LV +M     P    Y   P       K++     +  
Sbjct: 232 YLPDWLTHEHVASGALVPVMTRHPPPPAGAYVVRPPGQHPARKIRVLTELLIE 284


>gi|206577674|ref|YP_002237661.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206566732|gb|ACI08508.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 306

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 137/296 (46%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + +KL +R  R L +T 
Sbjct: 1   MDRFDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAVYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ  + + ++ +D+  D  DC +R    I   SLI R +  + +  Y APHY++    P 
Sbjct: 121 IQFDMGVSDRVVDLIGDNVDCVLR-GGEITDQSLIARHVGDLQIGVYVAPHYVERLGAPA 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL    H ++ F     + ++    L +    I       L V+   + ++  + G 
Sbjct: 180 HPRELQNTDHRIVGFVSSRSRKIDPLV-LRSESEQIEITGNYVLAVDDGNAYLEAGLAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+   +     L+ +          ++  +P      GKL+ F ++I  
Sbjct: 239 GVIALPIYMAAAHQAVGALIPLFTQWRISPMPLHLAFPPNRHVNGKLRVFIDWIVE 294


>gi|169795521|ref|YP_001713314.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213158538|ref|YP_002319836.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483008|ref|YP_002325213.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301345527|ref|ZP_07226268.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301513178|ref|ZP_07238415.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301597159|ref|ZP_07242167.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332850715|ref|ZP_08432962.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332866984|ref|ZP_08437301.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169148448|emb|CAM86314.1| putative HTH-type transcriptional regulator (LysR family)
           [Acinetobacter baumannii AYE]
 gi|213057698|gb|ACJ42600.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986362|gb|ACJ56661.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332730552|gb|EGJ61868.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332734313|gb|EGJ65441.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 300

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 138/298 (46%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA   S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYERMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR  + + +S+LI R L    +   A+P YLK  
Sbjct: 121 KYPDIQIEINISNRNVDLIAEGFDLAIRQGQ-LPNSTLIARPLEQAPLKLVASPAYLKRM 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYC 235
             P +++EL  H  I F   +P   +   W    D    +  P    L     + ++   
Sbjct: 180 GIPKNLEELKHHQCIAFE--LPSSGKITPWFLKNDNEEIQWIPTNRILVKEDIVGVVTLA 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G GI    D+IV +      L  I+      +      Y +    +   +A  +F+
Sbjct: 238 ESGLGICQSYDFIVNEKIQQGKLQPILNTYAGHTRPFSLLYAQHKHMSSATRALIDFL 295


>gi|159186098|ref|NP_356365.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141232|gb|AAK89150.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 138/302 (45%), Gaps = 12/302 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +D L     F +VA  GS T AA  L  + S +SR I+ LET +G +L  R  R L
Sbjct: 1   MGRRFDHLGDVEAFIIVAEKGSMTEAAVALATTASVLSRAITRLETRLGAQLMRRTTRRL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
            LT++G          +  ++  +  +Q  +    +G +RI+     G + L   L+ F+
Sbjct: 61  NLTDEGRAYLEQARAAFSMIDDAERAIQGPTGASLTGHVRISVPTTYGHHRLPAMLERFM 120

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP++QI+L + N+++D+  +  D AIRL  P+  S L+ RKL    +   AAPHYL+ 
Sbjct: 121 QAYPEVQIELSITNRNVDLVAEGYDLAIRLG-PLPDSGLVARKLEDASLRLVAAPHYLER 179

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQY 234
              P  +++L +H  + F  ++P       WL  VD    +  P       +  L ++  
Sbjct: 180 AGMPQDVEDLAEHQCLPF--VMPSTGRCAPWLFHVDGRDLDWTPPGRIQVFDDVLGVVSL 237

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              G GI  + D+I++D      LV +++            +    + +   +   +F+ 
Sbjct: 238 AESGLGICQIYDFIIRDRVKEGRLVEVLDHAQGRFRPFSLIFAPHRRLSAATRTLIDFLV 297

Query: 292 LK 293
            K
Sbjct: 298 EK 299


>gi|327189544|gb|EGE56697.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 297

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 137/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE
Sbjct: 1   MDTLTRIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  S++  +++     ++E++ +  G+LRI+         +  +L +F    PD
Sbjct: 61  AGHTYYRSASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLIDFAAENPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H  A P +++   +  
Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKVSDFRVHLCATPDFIERHPDLE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              ++     I   D   +      +    +          ++VNS  + ++  + G GI
Sbjct: 180 HPSDISNVPFIV--DTNSRTQGSIRFYNPDNTTFAVAVSGPIEVNSPHATLRAALAGIGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL+PD+I +   ++  L+ +  D I     +Y  YP       K++ F +++
Sbjct: 238 ALIPDFIARKPIESGELLTLFNDYIPTDRGIYAVYPHRRYLPAKVRIFVDYL 289


>gi|193077725|gb|ABO12583.2| regulatory protein LysR:LysR, substrate-binding [Acinetobacter
           baumannii ATCC 17978]
          Length = 300

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 138/298 (46%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA   S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR  + + +S+LI R L    +   A+P YLK  
Sbjct: 121 KYPDIQIEISISNRNVDLIAEGFDLAIRQGQ-LPNSTLIARPLEQAPLKLVASPAYLKRM 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYC 235
             P +++EL  H  I F   +P   +   W    D    +  P    L     + ++   
Sbjct: 180 GIPKNLEELKHHQCIAFE--LPSSGKITPWFLKNDNEEIQWIPTNRILVKEDIVGVVTLA 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G GI    D+IV +      L  I+      +      Y +    +   +A  +F+
Sbjct: 238 ESGLGICQSYDFIVNEKIQQGKLQPILTTYAGHTRPFSLLYAQHKHMSSATRALIDFL 295


>gi|270260903|ref|ZP_06189176.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044387|gb|EFA17478.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 296

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 10/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V   GSF  AA+++ +S + + + I  LE  +   L  R  R   LTE
Sbjct: 1   MDRLTSMAVFVRVVEKGSFVAAADEMAISPTMVGKHIRYLEQRLNAPLLNRTTRRQGLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +    +  +   +     PSG LRI+  +  G  +L   L EFL  +PD
Sbjct: 61  AGRVFYERCRRLLADADAAEASARALLSSPSGLLRISAPVTFGNRVLTPILTEFLQQHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +++L ++ +D+  +  + A R+  P+    L+ R L    M   A+P YL     P 
Sbjct: 121 VEAEVVLSDRKVDLIEERYEAAFRIG-PVADDGLVARALPDYRMTLAASPGYLTQHGVPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H+   F          F  L      I  P    L+++S   + +  + G GI
Sbjct: 180 RPEQLSEHSCFGFSQ---WDGNHFWRLQGAQGEISVPVRPRLRMDSGEGVRRAALAGFGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           AL    ++ ++     LVR++ D       ++  Y    + + KL+AF       AR W
Sbjct: 237 ALHAAMLLDEDIAAGRLVRVLPDYSPLPRPMHLVYLPERRQSPKLEAFIA--LTVARLW 293


>gi|167572658|ref|ZP_02365532.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 299

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFMEQWSGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    +     + +    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLADHVATVVADPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAV-DPSLIARRLGTCRSVLCASPGYLAEYGAPTRPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++  + G G+ALLP 
Sbjct: 185 ARHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAAIAGGGVALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      LVR++ D   P   +Y  Y    +    ++   +F+  +  D
Sbjct: 241 FAAAEPIRAGALVRVLADCTAPELGIYAVYASRKQMPLAMRTMIDFLAERFGD 293


>gi|127512061|ref|YP_001093258.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126637356|gb|ABO22999.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 313

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    +     +   +    G L++  +   G   +   L +F+  +P++++
Sbjct: 65  LLYAQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPDFMARHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y+     P   +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLAASPEYVAKHGYPERPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    V G G+  
Sbjct: 184 QLVDHNCLVYH---GEWHEHSVWQFKKGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y++++      LV ++ +  +T    +   YP       K+ AF +FI
Sbjct: 241 LASYLLENEIEKGTLVPLLPEWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|126172500|ref|YP_001048649.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125995705|gb|ABN59780.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 307

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 134/297 (45%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +++F  VA   SFT A+  L LS++ +S  ++  ET +G +L  R  R + LT
Sbjct: 1   MQDRLQAMQIFMRVAELQSFTQASASLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +     +  + +  +   Q  + + SG+LR+  +  + +NL+   L EF+  YP
Sbjct: 61  QDGQSCYERCKSLLAEFQELESLFQLQAEQVSGRLRVDMSTGIARNLVLPKLAEFIEQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ +D+  +  DC IR+   +Q   LI +K+    M    +P Y+    +P
Sbjct: 121 HIELELSSTDRKVDVIAEGFDCVIRVGS-VQQEGLIAKKMGHFKMLNCVSPAYIAKYGKP 179

Query: 181 LSIQE--LDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            S+++  L  H L+ +   +      F +    T    +       + VN+  +    C+
Sbjct: 180 ESLEDLTLHNHKLVHYVSQLGGTDSGFEYQDPHTHQANLTIQLPKLITVNNADAYSSACL 239

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  +P   V        LV I+++   P   V   YP     + +L+ F  ++
Sbjct: 240 AGLGIIQVPSIGVAKYLHTGELVEILQNYPAPPMPVSLLYPHRRHLSKRLQVFMAWL 296


>gi|190894475|ref|YP_001984768.1| putative LysR family transcriptional regulator [Rhizobium etli CIAT
           652]
 gi|218515744|ref|ZP_03512584.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
 gi|190700136|gb|ACE94218.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 301

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V + G F+ AA  L ++ S++S+ I+ LE  +G +L  R  R LTLTE+G   
Sbjct: 6   EMEVFARVVQDGGFSAAARNLDITPSAVSKLIARLEARLGTRLLVRTTRALTLTEEGEAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H    ++  +L     +   +     G+LRI TTI  G   +   + +F+   PD+ + L
Sbjct: 66  HHAALKILQELN--DADQAAAGGAVRGRLRINTTIPFGTMFVAPVIPDFIARNPDLIVDL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D AIR+   +  S LI RKL        A+  YL  C  P+   +L
Sbjct: 124 SFTDGIVDLVAEKTDVAIRMGD-LPDSGLIARKLGQSRRVVCASADYLVRCGSPVKPADL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + H+ +TF     +    F       + + +P    + VN+  ++ Q  + G+GIA +  
Sbjct: 183 EHHDCLTFNFRRARPSWPFR---CGGQDVAQPVKGSIVVNNGETMKQMALAGAGIARVGL 239

Query: 247 YIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIF 291
           + V D      LV ++E+        V+  Y        +++ F  ++ 
Sbjct: 240 FHVADEIATGRLVPLLEEYNPGDLELVHAVYVGGGPLPHRVRDFIEYMV 288


>gi|204927662|ref|ZP_03218863.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323004|gb|EDZ08200.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 302

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 14/300 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +  + + ++  V   GSF  AAE L L + +++R +  LE ++G+KL +R  R +++
Sbjct: 1   MQLNMLEAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSM 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G + ++    +  +L+  +     S+  P G+LR+   I L + ++   L +F   Y
Sbjct: 61  TDEGEEFYQRCLSLLSELDDVRRLF-SSTQPPKGRLRLDVPITLTRAVIIPALGDFQNRY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI+I L   ++ ID+  +  DC IRL + +  SS + R+L T  M   AAP YL     
Sbjct: 120 PDIEIVLGSSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGT 178

Query: 180 PLSIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVL 237
           P SI EL   H  + F       ++   W  TVD  I   ++ S + V++  + +   + 
Sbjct: 179 PHSIDELMTSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLA 236

Query: 238 GSGI--ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI   L P    +I   +  L  I+ D   P   V   YP+      K++ F +++  
Sbjct: 237 GLGILHGLRPSLAPFIA--SGELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWLCE 294


>gi|300702876|ref|YP_003744477.1| transcriptional regulatory protein, lysr family [Ralstonia
           solanacearum CFBP2957]
 gi|299070538|emb|CBJ41833.1| putative transcriptional regulatory protein, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 289

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F      GS + AA  L LS     + +  LE  +GIKL  R  R   LT+ G    
Sbjct: 1   MQTFVKAVELGSISAAATDLDLSPQLAGKHVRVLEQSLGIKLLNRTTRRQNLTDSGRIFF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +  + E+   P G+LRI+  I  G + L   + E+L ++P++ + L 
Sbjct: 61  ERAKNILAEMAAAEALVAEARSVPRGRLRISAPITFGSHALAPAIPEYLKVHPEVSVDLS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  +  D   R  + +  S L+ R L  + +   AAP YL++  +    ++L 
Sbjct: 121 LTNRTVDLIDEGFDVVFRTGE-LPDSGLLARNLAPLRLVLCAAPAYLESAAKLRRPEDLQ 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F     +    F+        +  P       +S  ++    V G GI L P  
Sbjct: 180 AHECLVFSHTSLRTQWSFD---GPHGRVTIPIDGRFSTDSGEALRAAAVGGLGIILQPHV 236

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +++D      LVR++     P   ++  Y    + T KL++F +F   K
Sbjct: 237 LLEDEIEAGRLVRLLPKYEPPPRPLHAIYAPDKRMTPKLRSFLDFAVRK 285


>gi|261820666|ref|YP_003258772.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604679|gb|ACX87165.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 297

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F VVAR  SFT AA +L LSQS++S  I GLE  +G++L  R  R +  TE G
Sbjct: 5   NVNDLISFLVVARERSFTKAAAKLGLSQSALSHSIRGLEERLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL       +  +E+  + L +   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  EKLAHSLGPRFADIESELVALSDMRERPAGNIRITAGEHAIDSILWPVLKPFLANYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + +DN   DI++   D  IRL + +    +  R    + M    +P+Y      P + 
Sbjct: 125 VDITMDNALTDIAIGRFDAGIRLGEQVAKGMIAVRIAPEMSMAVVGSPNYFARNPPPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L +H  I     +P     + W      R I       L +NS    +    +G G+A
Sbjct: 185 QDLHQHRCINM--RLPAMGGIYAWEFEKSGREIKVCVEGQLTMNSLRQRIDAAQIGLGVA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V+D   +  L+R++ +   P    Y  YP   ++T     F   +
Sbjct: 243 YVPEDSVQDNIASGRLIRVLTEWCPPFPGYYLYYPSRKQHTTAFSLFVEAL 293


>gi|148975480|ref|ZP_01812351.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145964908|gb|EDK30159.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 300

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 151/297 (50%), Gaps = 6/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V   GSFTHAAE L++++S++SR+++ LE  +G++L  R  R L LT +
Sbjct: 1   MDLNAVTVFTQVVDCGSFTHAAEVLNMTKSTVSRKLAELEQHLGVRLITRSTRSLILTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++ + ++   +   ++E+  +     G L +   ++LG  +L   +  FLL YP++
Sbjct: 61  GERFYQSSLQMQEIMNQAELEVSANQDLIRGPLNVVLPVELGHQVLAKYIHSFLLEYPNV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L N+++DI  +  D   ++ + +  SSL+ R L T      A+P YL+      +
Sbjct: 121 TINLELTNREVDIIGEGIDLYAQIGE-LVDSSLVSRYLTTSKRVLVASPKYLEQVGPINT 179

Query: 183 IQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++     +I   +   +  +    L   +  + +   S L+VN+  + +  CV G G+
Sbjct: 180 PKDIKTPFRMIEVVNKAARLPKWELQLGDGESELIQ-LPSQLRVNTITACLTACVDGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+LP++I +++     LV ++ +   P  +V   Y +      + K F +++    +
Sbjct: 239 AVLPEFICREHFKTGRLVNLLPEYDMPQVSVSLVYADRQLMPKRKKVFIDYLLTAFQ 295


>gi|94497500|ref|ZP_01304070.1| transcriptional regulatory protein [Sphingomonas sp. SKA58]
 gi|94423131|gb|EAT08162.1| transcriptional regulatory protein [Sphingomonas sp. SKA58]
          Length = 297

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 138/294 (46%), Gaps = 7/294 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D++   +F  V    SFT AA+ L +S++++S+ ++ LE  +   LF R +R L L
Sbjct: 1   MRLPDFEAWAMFAAVVEHRSFTDAAKALSVSKATVSKAVTRLEEHLDTSLFNRTSRRLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L      +  +    +   ++ + + SG +R+   +  G   +   + +F  ++
Sbjct: 61  TESGKRLADHAQRILAEGRAAEEAARDETAELSGVVRLGAPMTFGLLRIAPLVAQFTKMH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I L L +  IDI     D  IR+   +  SSL  R+L  +++H  A+P YL     
Sbjct: 121 PLVDIDLHLSDAKIDIVEMGLDATIRIAD-MPDSSLRARRLADVNLHVIASPAYLDARGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L  H+ I + +++P  +  F+      + +       L +NS  +++     G 
Sbjct: 180 PAHPSDLGVHDCICYSNVMPSDVWRFS--GPGQQVVAVQVRGRLTINSGEAMLPALRDGI 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA LPD+IV +      L  I+ D  +P   ++   P +     ++ A  +FI
Sbjct: 238 GIARLPDFIVGEALAKGELEEILIDWRSPPVGLHLVTPPSRLRPARVDALIDFI 291


>gi|292489724|ref|YP_003532614.1| putative RuBisCO transcriptional regulator [Erwinia amylovora
           CFBP1430]
 gi|292898068|ref|YP_003537437.1| LysR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291197916|emb|CBJ45017.1| LysR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291555161|emb|CBA23351.1| probable RuBisCO transcriptional regulator [Erwinia amylovora
           CFBP1430]
          Length = 302

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 131/295 (44%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M    D+LR    F     SGSFT AA +LHL+ S++S+ I+ LE  +G +LF R  R L
Sbjct: 1   MPVSEDRLRGITPFVASVESGSFTAAAGRLHLTCSAVSKSIARLEARLGSRLFERTTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G   +   + V  +L   +  L      P G+LR+A     G+  +   L +F  
Sbjct: 61  VLTDAGQAFYDTCARVLGELAEAESVLAAQRSMPVGRLRVAVPHTFGRLHVMPLLNDFCR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN 176
            +P++Q+ L   ++ +D+  +  D A+R+  P     SL  R L +  +   AAP YL  
Sbjct: 121 QHPEMQLNLSFSDRFVDLFEEGIDVAVRIGGPGNYPPSLGVRYLGSERLIFCAAPDYLAQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P S+ +L++H  I + + I      ++  +   R         + +    +      
Sbjct: 181 HGIPQSLAQLEQHKAIVY-NRIDGSTSPWHVASLDGRITTRTVAHRMALADGEAQRSAVA 239

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            G G+A +  ++++       L+ I+  +      +Y  +P   +   K+ A  N
Sbjct: 240 AGLGVAQMATWLMEQQLAQGELIPILPQLSVAGLPLYVVWPRRKQLMPKVDALLN 294


>gi|209544842|ref|YP_002277071.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532519|gb|ACI52456.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 300

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +  F  V  +GSF+ AA  L++ Q ++S+ I+ LE+ + + L  R   GLT TE
Sbjct: 1   MDRYQAMATFVRVVETGSFSAAARHLNVGQPAVSKTIAQLESRLQVSLLIRSTHGLTPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +        + +  ++  + +    SG+LR++      +  +   L  FL  +P 
Sbjct: 61  AGQSFYERARNAIQEADEAELAAKGAGAGLSGRLRVSAATTFARLHVIPKLPHFLAAHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + +ILD++ ID+  +  D ++R+   +  S+ + RK+ T      A P YL    +P 
Sbjct: 121 LDVDIILDDRMIDLVAEGVDISLRMGM-LSDSTAVARKIATGGRSVLATPAYLARAGKPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S  +L  H  I +        +   W  T D       +   L+V++   +    +   G
Sbjct: 180 SPADLANHEAIIYSQ------QPNAWSFTRDGAAVSVSVGGRLRVSAAEGLRAALLADMG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +  D++     +N  +VR++E    P   ++  +P     T K + F  F+
Sbjct: 234 LTIASDWMFAPELENGAIVRVLEAWSLPPIGLWAVFPAGRMMTAKARRFAAFV 286


>gi|90407747|ref|ZP_01215925.1| Putative transcriptional regulator, LysR family protein
           [Psychromonas sp. CNPT3]
 gi|90311107|gb|EAS39214.1| Putative transcriptional regulator, LysR family protein
           [Psychromonas sp. CNPT3]
          Length = 288

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 139/291 (47%), Gaps = 11/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W  +  F  VA + SFT A++ LH+S + +SRQ+S LE  + IKLFYR  R ++LT++
Sbjct: 1   MSWQGINEFVAVAATQSFTMASKNLHISTAQVSRQVSALEKRLNIKLFYRSTRKVSLTQE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    V   L+  +  L     + SG ++++  I  G+  +Q  L +F+ L+P I
Sbjct: 61  GQLFYKDCKNVLEGLKAAEDALSNLQQQASGSIKLSAPITFGEQKIQPLLNDFIKLHPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I   L N+ ID+     D AIRL   ++ S+L+ +KL     +  A+P Y++    P S
Sbjct: 121 EIISELSNQRIDLLAGGFDLAIRLGS-LEDSNLLAKKLALRSTYVCASPAYIEKFGVPHS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  HN +           D        +         ++ NS + ++   + G G+ 
Sbjct: 180 TSELRTHNCLL-------GTRDMWHFNEQGKEKNIRVKGNIRCNSGIGLVDAALKGIGLI 232

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L +  V +   +  L+R+++ V      ++  YPE      K++   +F+
Sbjct: 233 QLANDYVDEYIKSGQLIRVLDSVRPNDEAIWAIYPENRYVAPKIRLLIDFL 283


>gi|254183311|ref|ZP_04889903.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184213844|gb|EDU10887.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 299

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQYLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAV-DPSLIARRLGTCRSALCASPGYLAEHGAPKRPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++    G GIALLP 
Sbjct: 185 TRHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAATAGGGIALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      LVR++ D   P   +Y  Y    +    ++   +F+  +  D
Sbjct: 241 FAAAEPIRTGALVRVLPDCAAPELGIYAVYASRKQMPLAMRTMIDFLAERFGD 293


>gi|13471571|ref|NP_103137.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022313|dbj|BAB48923.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 302

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +L+ F  +   GSF  AA +L +S  ++S+ I  LE  VG++L  R  R ++ T  G
Sbjct: 5   EFTELKAFSAIVEEGSFVRAAARLRVSPPALSQSIRQLEARVGVRLLNRTTRSVSATAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +  + +LE+   ++  +  +P+G LRI          +   L +F   YPDI 
Sbjct: 65  DALFSRLAVAFGELESAIADVHAARDRPAGSLRINVPRVAAMRFIAPILGDFQRAYPDIA 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +I+D+   DI     D  IRL + ++   +  +    + M A AAP YL+N   P   
Sbjct: 125 LTVIVDDTLADIVEGRFDAGIRLGERLEKDMVAVKLSEDLQMAAVAAPAYLENRAIPRHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL +H  I F    P     + W     R   E  I   L VN    ++   + G GIA
Sbjct: 185 QELHQHQCIKFE--WPGGGNLYRWEFARGRRALEIAIEGSLTVNDTELMLNAVLDGVGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + +Y V+   +   LVR +E         Y  +P +      L+AF +F+  +
Sbjct: 243 YMFEYQVRPWIEQGRLVRFLEAWSPSFPGFYLYHPSSRHVPPALRAFIDFMRAR 296


>gi|330890792|gb|EGH23453.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 305

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMIVIPALPEFSRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++  D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 IRLEIGMSDRPADLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASRDYLQRYGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H +I +            ++A     + +     + VNS    +  C  G G+
Sbjct: 180 NLPDLAQHQVIEYFSTSTGKRYGLEFMAG-GVEVDQALACSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V        LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWLVE 292


>gi|187922237|ref|YP_001893879.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713431|gb|ACD14655.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 309

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 139/309 (44%), Gaps = 14/309 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LR F   A  GSF  AA+QL +  S++SR I+ LE ++GI LF R  RGL LTE
Sbjct: 1   MDYFAALRAFLYAADLGSFNKAADQLQVKTSTVSRHIAELERDLGIALFNRSTRGLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G       +     L+   +     +  P G LR+      G+  +  ++ EF+  YP 
Sbjct: 61  GGHVFREQGAAAIRMLDEACVATSSLNASPQGLLRVTMPTAFGRRHVVAHIPEFMRRYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + +++ ++ ++      D AIR+   +  S L+ R+L        A+P +++    P 
Sbjct: 121 IDVDVVITDEIVNFVATGVDVAIRVG-VLPDSQLMARRLANHTSVVCASPDHVRLHGVPS 179

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S  EL  H  I F         +   +     +  +       L+ N+  +I+   + GS
Sbjct: 180 SPAELSTHPAIRFAIAGDDSWFLARQSGADGQEEAVEVKLRGRLRANNIEAILDLAIAGS 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF--- 289
           G ALLP + + +      LVR++ D      +    ++  YP     + K++AF +F   
Sbjct: 240 GAALLPLWAIGEPLRTGLLVRLLPDWQGQATSSPPAIWGVYPRKKTVSSKVRAFLDFYSD 299

Query: 290 IFLKARDWK 298
           +F + R W+
Sbjct: 300 MFSRERYWE 308


>gi|156973686|ref|YP_001444593.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156525280|gb|ABU70366.1| hypothetical protein VIBHAR_01389 [Vibrio harveyi ATCC BAA-1116]
          Length = 306

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 124/290 (42%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  + +  +FT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   +
Sbjct: 1   MVIFSALIKHKNFTAAAKSLGVSVSHVSKQLSQLEASLGIKLVQRTTRSFTPTEAGQTFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   + +  +E++    + +G +R+  +   G   +   ++E    YP +Q+++ 
Sbjct: 61  HHCEQVVQAVSSATLEMESQRDEVAGLVRLGLSQSFGTLHIIPAIQELREKYPQLQVEVH 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D  I   + +     I ++L        A+P YL     P    +L 
Sbjct: 121 LFDYKVDMLEEGLDLWITNNEHLP-EGYIAQRLADCQFVVAASPDYLLKFDTPTEPNDLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN + +                 ++ +         V+   ++    + G GIA L  Y
Sbjct: 180 QHNCLIYRSWERDYTSWA--FTNREQELNVKVSGNYSVDLAEAVRDAAIAGWGIAYLATY 237

Query: 248 IVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ D   +  L++++ D   + S   Y  YP       K+ A   FI  K
Sbjct: 238 LLGDEFRSGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVIEFIKQK 287


>gi|86139527|ref|ZP_01058095.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85823710|gb|EAQ43917.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 323

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D  D++R F   A++GSFT AA+Q+ +S    S+ ++ LE  +G++L  R  R + LT
Sbjct: 22  AMDRIDQIRAFVATAQTGSFTAAADQMGISNRLTSKYVAELEARLGVRLLQRTTRRVGLT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L      +    +    E+ ESS   SG LR++  I  G+  + G L  F   +P
Sbjct: 82  PAGEDLLTRAPALLDDFDAVLSEVTESSKGFSGTLRVSAPITFGEIYVVGMLARFAAAHP 141

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L LD+K +D++ +  D   RL      +SL  R+L        A+P YL  C  P
Sbjct: 142 AVSIELRLDDKYLDLASEGLDLTFRLGH-FDQASLKVRRLGEFRSVLVASPDYLARCGTP 200

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + +EL  H  I   D   +    + +       I         VNS  + +   + G G
Sbjct: 201 TTPEELSNHACIV--DTNRRNPRRWMFRKGGSETIAHV-TGRFHVNSASAAVALAISGIG 257

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +A +P + ++    + +LV ++++  + S  V   Y E      K++A  +F
Sbjct: 258 LAYVPSFALRGAVKSGDLVALLDEYRSESGPVGAAYLEGRTLPRKVRALIDF 309


>gi|161525037|ref|YP_001580049.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350220|ref|YP_001945848.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160342466|gb|ABX15552.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189334242|dbj|BAG43312.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 313

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAVARYRERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+  +  D AI + + +  S L+ ++L   +    A+  Y+     P 
Sbjct: 121 VHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASTAYVAAHGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
              +L +H  +    + P    D   L   D     P  +   +VN   ++      G G
Sbjct: 181 CPADLAQHVCLGM--VAPGFHYDEWTLTGPDGDESVPVTAPPFRVNVAEALAVAVREGMG 238

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LP Y       +  +VR+M +  +    +Y  Y        K++ + +F+
Sbjct: 239 IGGLPLYSAIGGLRSGQIVRVMPEYRSHVMNIYALYASRQYLDAKIRTWVDFL 291


>gi|153001561|ref|YP_001367242.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|160876297|ref|YP_001555613.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|217972510|ref|YP_002357261.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|304410079|ref|ZP_07391698.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307302209|ref|ZP_07581967.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|151366179|gb|ABS09179.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
 gi|160861819|gb|ABX50353.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|217497645|gb|ACK45838.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
 gi|304351488|gb|EFM15887.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306914247|gb|EFN44668.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|315268486|gb|ADT95339.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 313

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE  +G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSAAARRLGISKSKVSTQVADLEHRLGVQLIQRTTRSLSLTEAGH 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    E     +   +    G L++  +   G   +   L  F+  +P++++
Sbjct: 65  LLYLQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGVMHIIPALPSFMAKHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y+    EP   +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLVASPGYIAQHGEPTRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    + G G+  
Sbjct: 184 QLVDHNCLVY---QGEWHEHSMWQFKKGDDYCEIGVSGNFRVDNAPALKSAAISGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV +++D  +T    +   YP       K+ +F  FI
Sbjct: 241 LASYLMEDEIAKGTLVPLLKDWQLTHHLPLQAVYPRRKHLAPKVSSFIEFI 291


>gi|251789461|ref|YP_003004182.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538082|gb|ACT06703.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 296

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  GS T AA +L +S+S  +R I+ LE  +G++L +R  R L LT 
Sbjct: 1   MDRLIAMQVFVAVADLGSLTAAANKLDMSRSMATRYIAALEHWLGVRLLHRSTRSLGLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ +     ++    E         + +P G +R+A+++  GQ+ L   L  +   YP 
Sbjct: 61  VGNDMLVRCRQIVVLSEDMAALSGGGNTEPHGVIRVASSVSFGQSYLSQALGRYRTRYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
              +LIL ++ I +  +  D A+ +       +LI + L        A P YL +   P+
Sbjct: 121 TTTELILTDRTIKLVEERIDLAVEVTNS-PDHNLIAKPLGRCASVVCATPDYLAHHAPPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +HN +    L  +            R +   R+     N  L ++     G GI
Sbjct: 180 TPNDLVRHNCLNHTRLGREWRFTHRETGERHRVMVSGRVVA---NDTLVLLNAARAGEGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP+++V+   D   LV ++ D  T +  +Y CY         L+   +F+
Sbjct: 237 ACLPEFVVRAGLDAGELVPLLGDYQTQALGIYACYMSRRHMPATLRTLLDFL 288


>gi|187918865|ref|YP_001887896.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717303|gb|ACD18526.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 303

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 8/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A   SFT AA    ++ +++SR ++ LE  +G++LF R  R + LT+ G +  
Sbjct: 13  IELFCLAAELESFTEAANAASVTPAAVSRTVARLEERLGVRLFVRTTRQIRLTDAGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +L   + E       P+G LRI+     G   +   L EF   YP + ++  
Sbjct: 73  EQCRLALAQLAEAEREATGQQTAPTGVLRISMPTPYGHYRVLPLLAEFRQRYPGVTVETH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID   +  D AIR   P   S LI R +    +   A+P YL+   +  +  +L 
Sbjct: 133 LSNRNIDFGEEGFDLAIRGAAPG-DSGLIARTIEDAELVVVASPAYLRGAAKLKTPDDLV 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CVLGSGIALLP 245
            H+ + +   +P    +  WL  V+  + E   S    +S   +        G+GI    
Sbjct: 192 HHDCVQYA--LPSTGRNLPWLFKVEDEVVETMTSGGYTSSGDVLAGATLARHGAGIFQTY 249

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +IV+ +     L  ++      S      YP A   + ++++F +F+  K 
Sbjct: 250 RFIVEKDIAAGTLKELLIPYGGCSRPFVLLYPHARHLSSRVRSFVDFLMEKL 301


>gi|300311424|ref|YP_003775516.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074209|gb|ADJ63608.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 327

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 5/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +RVF  V  +GSFT AA+Q+ L+ + +SR ++ LE  +  +L  R  R + LT
Sbjct: 1   MMDTLQNMRVFARVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   ++  + E   + VKPSG+LRI      GQ  +  ++  +   YP
Sbjct: 61  EAGERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  D+  +  D ++ L + +  S LI R+L +      A+P YL     P
Sbjct: 121 DVAVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGSTFSMLCASPAYLDKYGAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  +     I    E    L   +        S  QVN   +++     G G
Sbjct: 181 QQPADLLNHACLQLVSPISPLDEWI--LEGPEGGTVVAVKSNFQVNVAEAMLTAIREGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I +LP Y   D      +VR++      +  VY  YP       K+  + +++  
Sbjct: 239 IGVLPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHE 293


>gi|254253418|ref|ZP_04946736.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124896027|gb|EAY69907.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 305

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 141/301 (46%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE  +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP + 
Sbjct: 66  RTISEKAGEIYRQAEEAESSAREMSVQPRGLVRLAVPMSYGLRWVAPLLPGFFRAYPGVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +     A+P YL+    P   
Sbjct: 126 IDLHLSDASVDLVADGFDAALRIAA-LPDSSLVARRLCAVTQFVVASPEYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL     +++       +  F   A  + P+       L+V +  +++   + G  IA 
Sbjct: 185 RELVDRPCLSYAYRARSAVWRFTNDAGEEEPV--MPAGPLRVTNSDALLPTLLDGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD--WK 298
           LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++      +  W+
Sbjct: 243 LPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVAALSDYFAEHLSEPTWR 302

Query: 299 F 299
           +
Sbjct: 303 W 303


>gi|330957650|gb|EGH57910.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 297

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 126/288 (43%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +  TE G 
Sbjct: 6   LNDLQAFLMVAREQSFTKAATKLGVTPSALSHTLRALEERMGLRLLARTTRNVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI
Sbjct: 66  RLMRSIGPLLDQISAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q
Sbjct: 126 EVCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFEKHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I            + W    D R +          NS + ++   + G G+A 
Sbjct: 186 DLTQHTCINIRHSPNGSC--YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +PD + + +     L  ++ D        +  YP   + +    AF +
Sbjct: 244 VPDSLAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVD 291


>gi|329903518|ref|ZP_08273531.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480]
 gi|327548301|gb|EGF32992.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480]
          Length = 304

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 136/289 (47%), Gaps = 8/289 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   AR+GSFT AA++L +++S++ + I+ LE  + IKLF+R  R +TLT  G+     
Sbjct: 12  IFVAAARAGSFTAAADRLGITKSAVGKSIARLEQRLAIKLFHRTTRKITLTVDGAAYFAS 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +     +   ++ LQ     PSG+LRI      G+ ++   L E    YP++ + L   
Sbjct: 72  CATALDGIADAELALQNGHQVPSGRLRIDMPAAFGRGVILPILAELTQTYPELTLTLTFT 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-REPLSIQELDK 188
           +  ID   +  D  IR  +  ++  L+ + L    +   A+P YL      P SI +L++
Sbjct: 132 DNLIDPIEEGIDLLIRFGEIKETGGLVAKLLSRERLRICASPAYLARKGGAPASIADLEQ 191

Query: 189 HNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I  +    P      +   T  + +     S  +V    +++   + G GI  LP +
Sbjct: 192 HACIVGYRRNTPMPWRTVD---TDGKEVRFAPPSTYEVGDGDAVLAMTLAGCGICQLPSF 248

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +V++   +  LV +++ V T    +Y  +P+      KL+   + + +K
Sbjct: 249 LVRESLRSGALVSMLDAVSTCESGIYAVWPQTRHLLPKLRKVIDVLEMK 297


>gi|330980799|gb|EGH78902.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 298

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + VF +VA + SFT   ++L +S S I + I  LE  +G++LF+R  R + LT +G
Sbjct: 3   SLGSIAVFVLVAETRSFTQTGKRLGISSSGIGKSIGRLEESLGVRLFHRSTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +LE  ++EL  +   P G+LRI+    L   L+   + +F+  YPDI+
Sbjct: 63  SIFLERCRRILSELEAAEMELSNARDLPKGRLRISLP--LVSGLVMPVIIDFMRTYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R   P   S L+ +++ +  +    AP Y      P   
Sbjct: 121 LDIDFSDRMVDIIEEGFDIVLRTGDPG-DSGLMSKRMGSFQLRIVGAPDYFARHAIPRHP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +          E +           E     +  N+   ++     G GIA 
Sbjct: 180 GDLSQHACLLHKFPSTGRFEHWPLRREAGVDDLE-LPQAMVCNTTEILVDVARAGLGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD+++     N  L+ +++D    + T    +P +   + +L+ F +F+  
Sbjct: 239 LPDFMISSAIRNGELIPVLDDYTVHTGTFRLLWPSSKHLSLRLRVFIDFMHA 290


>gi|322835119|ref|YP_004215146.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170320|gb|ADW76019.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 295

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 130/296 (43%), Gaps = 7/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  +G+F+ AAE+L +S   + + I  LE  +  +L  R  R  +LT+
Sbjct: 1   MDKLRNIEVFISVVETGNFSTAAEKLGISAVMVGKHIQQLEKYLNARLLQRTTRKQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  +++ T+  ++     P+G LRI+  + LG +++   L  +L  +  
Sbjct: 61  AGEVFYENGKRVLEQMKFTESAMESLQSVPTGLLRISAPVSLGSSVVAPMLARYLQKHSK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++LIL N  +D+  +  D AIR+ + I    L+ + L    M   A+  YL+    P 
Sbjct: 121 VNVELILSNARVDLIAEGFDAAIRIGE-IGDDRLVAKPLNPYEMVICASADYLQRFGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H  +     +    E ++           P  S    N   ++    + G+G+
Sbjct: 180 TPEDLKTHPCLVH--TVWNQSEGWHLANAERTTSAWPVNSRYVSNDGHALRAAALEGTGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L P  ++ ++     L+ ++E  I     V+  Y    +   KL +  NF+   A
Sbjct: 238 LLQPKVLLAEDIASGKLIPVLESFIPKPRAVHLVYLPDFRPRAKLTSLINFMTEHA 293


>gi|258544572|ref|ZP_05704806.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
 gi|258520203|gb|EEV89062.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
          Length = 297

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 148/293 (50%), Gaps = 12/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L++F  +  SGSFT A+E L +S +  S+ +S LE  +GI+L  R++R L+LT +G   +
Sbjct: 7   LKIFAQIVESGSFTRASEYLGISTAMASKHLSHLEKHLGIRLMQRNSRSLSLTAEGEVYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R + E    L+    +       P G LR+   I     +    ++E+   YP++ + +I
Sbjct: 67  RQSIEALQLLDAAAAQAGSGRETPQGHLRLTAPIWCANPVFADWMREYRARYPEVSLDII 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN   D+  +  D A+R+ +     SL+ R+L  +     A+P Y++    P ++++  
Sbjct: 127 LDNDMRDLIGEGIDLALRVSRA-PIPSLVVRRLFEVRFALVASPAYIRRHGLPRTLEDAA 185

Query: 188 KHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H+ +  ++ D+        +   T+         S LQ NS + + Q  + GSGI  LP
Sbjct: 186 SHSAVLPSYADISRMDCRRGDESHTLHLH------SALQSNSTVMLHQLLLAGSGIGYLP 239

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++ +D+     LVR++ D    S T++  YP+    + K+++F +F+  KA+
Sbjct: 240 LWLAQDDLTAGRLVRLLPDWQLRSITLHAAYPDRRHLSAKIRSFIDFLVEKAK 292


>gi|184158676|ref|YP_001847015.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332874371|ref|ZP_08442282.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183210270|gb|ACC57668.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322507513|gb|ADX02967.1| Regulatory protein LysR:LysR, substrate-binding protein
           [Acinetobacter baumannii 1656-2]
 gi|323518591|gb|ADX92972.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332737450|gb|EGJ68366.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 300

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 138/298 (46%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA   S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADVEVFLIVAEKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR  + + +S+LI R L    +   A+P YLK  
Sbjct: 121 KYPDIQIEISISNRNVDLIAEGFDLAIRQGQ-LPNSTLIARPLEQAPLKLVASPAYLKRM 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYC 235
             P +++EL  H  I F   +P   +   W    D    +  P    L     + ++   
Sbjct: 180 GIPKNLEELKHHQCIAFE--LPSSGKITPWFLKNDNEEIQWIPTNRILVKEDIVGVVTLA 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G GI    D+IV +      L  I+      +      Y +    +   +A  +F+
Sbjct: 238 ESGLGICQSYDFIVNEKIQQGKLQPILNTYAGHTRPFSLLYAQHKHMSSATRALIDFL 295


>gi|153837786|ref|ZP_01990453.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149748807|gb|EDM59646.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 298

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT 
Sbjct: 4   KVNLADIRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G + +    +    ++   I   + + +  G +R+      +G++++   + EF+  YP
Sbjct: 64  AGERFYHDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L   +  ID+  D  D A R+ + +  +  + RKL+T+ M   A+P Y++    P
Sbjct: 124 SVSIDLDFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL +H  +T          ++      +          L+  +  +++   + G+G
Sbjct: 183 KHPKELAEHRTLT----GSVTRWNYRKAENPNDHADVVVKGNLRCKNGRALVMGALHGNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  +P     +      L+++M +   PS      +        +L+ F +FI  K  D
Sbjct: 239 IIRVPLSYCAEEVELGQLIKVMPNWEIPSVPFSAIFHRDRYQPKRLRTFIDFIKQKFED 297


>gi|329890694|ref|ZP_08269037.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328845995|gb|EGF95559.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 295

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 131/293 (44%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA   SF+ AA +L LS S++SR+I+ LE  +  +L +R  R + LT+ G 
Sbjct: 4   WDGIDEFTAVAEQASFSAAARRLSLSTSAVSREIARLEDRLQTRLLHRTTRRVELTDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +     +Q     P G LR+  ++  G+  +   +  F    P+++I
Sbjct: 64  DFLSRCRRLIDERDEALAAVQPDDQAPRGLLRMTCSVSYGERFIAPAVNAFARQNPELRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L LDN+  D+  D  D A+R    +  S L+ R+L +  +   A+P YL     P  + 
Sbjct: 124 ELDLDNRLRDLVGDGYDLAVRFGH-LTHSRLMARRLASRRLILCASPDYLARRGAPRDLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E+  H+ +           +        R +        + NS  +++   + G G+  L
Sbjct: 183 EIPSHDGLI-------GSAEHWRFTEAGREVSLRPSGRWRCNSGAAVLDAALQGLGLCQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PD+ V +   +  LV ++++   P   V+  +P       K++A  +++  + 
Sbjct: 236 PDFYVAEGLASGALVSLLDEARPPDEGVWAVHPHPRHVPPKVRAMIDWLHDRL 288


>gi|91775502|ref|YP_545258.1| LysR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91709489|gb|ABE49417.1| transcriptional regulator, LysR family [Methylobacillus flagellatus
           KT]
          Length = 305

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 127/298 (42%), Gaps = 7/298 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D+L  F  VA + SF+ AA+++    + +SR++S LE+ +G++L  R  R + LTE
Sbjct: 7   RVSLDELVAFVAVAETSSFSVAAKRMGRDPTILSRRVSQLESSLGVRLLTRTTRRVVLTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  +L+   +E    +  P G LRI+     G+  +   +  F+  +P 
Sbjct: 67  VGNFYYPRIRTIIDELDAASLEASNFASSPQGLLRISLPFTFGKQWIAPLIPGFIAQHPR 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  D A+RL   + SSSL  +K+        AAP ++     P 
Sbjct: 127 IKVDVRFTDRLVDLVAEGYDIAVRLGTSLNSSSLTAKKIAPFRYVLLAAPKFIAEHGLPA 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  +  + F  L      ++       R    P    L  ++  +++   + G+GI
Sbjct: 187 GPEDLAHYPCLGFTSL--STWPEWRLKNGAQRKTIRPE-GPLVTDNSEALLLAAIQGAGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L  D++         L  ++          +Y   P       K + F + I    R
Sbjct: 244 ILTADWLAAAAIREGALTEVLPGWEGAGEGGIYAVMPPGRLIPTKTRLFVDEITASIR 301


>gi|300781857|ref|YP_003739092.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299060123|emb|CAX53313.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 289

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 131/292 (44%), Gaps = 9/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V ++ SF  AAE L +  S++SR+I  LE  +G++L +R  R + LTE G   +
Sbjct: 1   MSCFVEVVKAQSFRGAAEALGMPNSTLSRKIKELEKFIGLRLLHRTTRKIELTEAGQIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +  +      +L     +P G LR++   D    +L   +K F   YP I     
Sbjct: 61  ERSRRIIDEARLAHEQLGSLLAQPQGMLRVSLPADFAVVILAPLIKAFSDFYPGISFDFD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +++D+  +  D A+R+   +  S LI RKL ++    YA+P YL     P +  EL 
Sbjct: 121 LTPRNVDLVSEPYDLAVRMGS-LPDSGLIARKLGSLSRSLYASPDYLVQNGTPGNPDELT 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I      P        L   +  I        Q+NS   + ++  +G+GIA+LPD 
Sbjct: 180 AHECIGMRQDKPGHWH----LHREESRISLRISGRFQMNSIGMMRRFASMGAGIAILPDK 235

Query: 248 IVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IV ++     L R++ D    + T+Y    E      K + F  F+  K  +
Sbjct: 236 IVGEDVADNKLTRVLPDWRAEAVTIYALT-ETRLLPAKTQVFIEFMREKLSE 286


>gi|89900015|ref|YP_522486.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344752|gb|ABD68955.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 309

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 129/289 (44%), Gaps = 8/289 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F     +G FT AA ++ L+ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 6   EMTAFVRAVETGGFTAAAREIGLTPSALSKLVTRLEDRLGARLLQRTTRRLQLTSEGEAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   ++  + E+ ++ + P G LR+      G + L   +  F  LYPD+Q+ +
Sbjct: 66  YARARPILLAMDEAEAEVSQAGLSPRGLLRLQCGTAFGMHQLARTIPHFQALYPDVQLDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++      +  D  IR   P+  SS++ R++ T+     AAP YL     P +  +L
Sbjct: 126 TISDRPPADMKEGIDLTIRTG-PLDDSSMVARRICTLERVICAAPSYLALHGTPRTPDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +   +L       F+   T D          +  N+  +++Q  V G GI  L +
Sbjct: 185 QRHNCLWISNLPALRRWPFD---TEDGIRVVHIGGNVVANNAETVLQLAVAGVGITRLTN 241

Query: 247 YIVKDNP---NLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            IV        LV I+ D        ++  YP       K++A  +F+ 
Sbjct: 242 VIVSAAIARRELVPILTDWHHVEPVPLFASYPSGRNLAPKVRAMVDFLV 290


>gi|294490372|gb|ADE89128.1| transcriptional regulator, LysR family [Escherichia coli IHE3034]
          Length = 299

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 1   MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 61  EGITYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 121 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARSLGKLTMVNCASPHYLTRFGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G GI
Sbjct: 180 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P   V++      L+ ++        ++   YP+  + + ++  F  ++
Sbjct: 239 IQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290


>gi|184157726|ref|YP_001846065.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332876409|ref|ZP_08444178.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209320|gb|ACC56718.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|193077041|gb|ABO11799.2| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           17978]
 gi|322508033|gb|ADX03487.1| Transcriptional regulator LysR family [Acinetobacter baumannii
           1656-2]
 gi|323517619|gb|ADX92000.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735419|gb|EGJ66477.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 313

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+
Sbjct: 10  LHAMHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGA 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ +
Sbjct: 70  TYAERCRQVISMVDEAEAEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +        D+     D ++ L + +  S  + R++ TI     A+P YL+    P S +
Sbjct: 130 EYTTSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPE 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +    + P    D++ L              L  ++   ++       G+ALL
Sbjct: 190 DLKNHACLRL--VNPSITPDWHLLNANGESYQIDIGGQLIADNPELLLDVVQQDMGVALL 247

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +   D   N  L  I+ +  +P   VY   P       K +A+ +++
Sbjct: 248 PMFSALDAVQNGRLCHILPEWRSPDIGVYTLLPSRHFIDAKTRAWLDWV 296


>gi|317401396|gb|EFV82030.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 307

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F ++ + G+ + AA +L L+  ++S +++ LE  +G++L  R  R +++T+
Sbjct: 1   MDALSDLAFFSLLVKHGNLSAAARELGLTPPAVSTRLAKLEQRLGVRLLNRSTRRVSVTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G       S +   L+  +  +  S  +P G LR+  T   G+  +   + +F   YP+
Sbjct: 61  EGELYLAEGSRILADLQALERSVSSSRAQPQGLLRLNATFGFGRAHVAPAISDFARQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL L ++ +++  +  D A+R    +  + L  RK+ +      A+P YL+   EP 
Sbjct: 121 VEVQLRLTDRPLNLIEEGFDAAVRFGD-LPDARLTARKIASNRRLLCASPRYLETFGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL +H  I   +           L +  R         +  N   S +++ + G GI
Sbjct: 180 TPGELQRHRCIVVRENDVAYGTWR--LESGSRTETVKVRGPVSSNDGQSALEWALDGHGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +  ++          L +++ D  TP   ++  YPE L    K  AF +F+  +
Sbjct: 238 VMRSEWETAALLRAGRLRQVLTDWATPPADIHVLYPERLNLPAKTLAFVDFLAQR 292


>gi|86356831|ref|YP_468723.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280933|gb|ABC89996.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 299

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 126/300 (42%), Gaps = 9/300 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  V   G F+ AA +L++S + +   +  LE  +G++L  R  R ++LTE
Sbjct: 1   MDRLTSLEVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEERLGVRLLNRTTRKVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +S++  +L+         S  P G L++ T+       L     E++ LYP 
Sbjct: 61  TGKYYYERSSQILAELDEADRTASALSTTPRGTLKVYTS-GAIVRFLLPVFSEYMELYPS 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +   +  + +D+  D  D  IR   P   SSLI RKL         +P Y+ +   P 
Sbjct: 120 ISVDFSVGERMVDMIEDGYDLVIRTLPP--DSSLIARKLTPWRHMLVCSPAYVDSHPIPK 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E+  HN + +        +++ +     R         +  N+   +    + G G+
Sbjct: 178 KPSEIADHNCLQYA--YYPYGDEWRFEDGDGRQESVKVSGNVVSNNAEMLRFLTLNGRGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            L P ++V D+     L+RIM D     FT+   Y        K++ F + +  +  + +
Sbjct: 236 FLAPSFVVFDDIAEGRLIRIMPDYKPVEFTINAVYSNRSHLPTKVRLFIDLLAERFAEHR 295


>gi|325272792|ref|ZP_08139134.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324102073|gb|EGB99577.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 298

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 8/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V    SF  AA +L +S ++++R +S LE ++G+KL  R  R + LTE
Sbjct: 1   MDQIHLMKVFVAVGELESFAAAARRLAISPAAVTRAVSALEEQLGVKLLLRTTRSVRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +    T  +   +          +  P G L +   I  G+  +  ++  +L  YP 
Sbjct: 61  AGGRYLEDTRHILASIHEANEAAAGINATPKGDLAVTAPILFGRKFVMPSIVRYLQQYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +     ++ +++  +  D A+R+  P+  S L   ++  +     AAP YL     P 
Sbjct: 121 VDVAAYFLDRVVNLVEEGMDVAVRIG-PLPDSGLKALRVGQVRRMLCAAPDYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H +I   +L P+    F      D P        L V S    +     G GI
Sbjct: 180 HPSDLAGHAVIGTTNLSPRAGWRFG---VTDEPTLVRMKPRLTVTSNDGAIAAACGGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A L  Y V D   +  L  I+ +     + ++  + E+   + K++ F + +    RD +
Sbjct: 237 ARLLSYQVADELASGQLQVILAEYEEAPWPIHILHRESKYGSAKVRTFIDMLAQALRDQQ 296

Query: 299 F 299
            
Sbjct: 297 L 297


>gi|311109394|ref|YP_003982247.1| HTH-type transcriptional regulator YeaT [Achromobacter xylosoxidans
           A8]
 gi|310764083|gb|ADP19532.1| uncharacterized HTH-type transcriptional regulator YeaT
           [Achromobacter xylosoxidans A8]
          Length = 307

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 133/295 (45%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F +V + G+ + AA +L L+  ++S +++ LE  +G++L  R  R +++T+
Sbjct: 1   MDALSDLAFFSLVVKHGNLSAAARELGLTPPAVSTRLAKLEQRLGVRLLNRTTRRVSVTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G         +   LE  +  +  +  +P G LR+  T   G+  +   + +F   YP+
Sbjct: 61  EGELYLAEGGRILTDLEALERSVSSARARPQGLLRLNATFGFGRAHIVPAVSDFARQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++Q+ L ++ +++  +  D A+R    +  + L  RK+ +      A+P YL+   EP 
Sbjct: 121 VEVQMRLTDRPLNLIEEGFDVAVRFGD-LPDARLTARKIASNRRLLCASPRYLETHGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  I   +           L +  R         L  N   S +++ + G GI
Sbjct: 180 APGDLQRHRCIVVRENDVAYGTWR--LESGLRAETVKVRGPLSSNDGQSALEWALDGHGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +  ++   D+     L  ++ D  TP   ++  YPE L    K  AF  F+  +
Sbjct: 238 VMRSEWETADHLRAGRLRVVLADWRTPPADIHALYPERLNLPAKTIAFVEFLSQR 292


>gi|260779006|ref|ZP_05887898.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605170|gb|EEX31465.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 283

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 143/285 (50%), Gaps = 11/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V   GSFT AAE L+  +S+ISR+I+ LE+++G++L  R  R L LTE G + ++ 
Sbjct: 2   VFATVVERGSFTQAAEALNTPKSNISRKITRLESQLGVRLLERSTRTLHLTEIGQRYYQY 61

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  + E     ++    KP G+LR+ T++ +GQ+LL  +L E+   YPD+++ L L 
Sbjct: 62  CKRIKEEYEAAGSAVESMLEKPQGRLRVCTSLGVGQSLLGDHLAEYCRHYPDVELDLSLT 121

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +D+  +  D A R+   +  S LI +KL +I++  YAAP +    R   +  +L KH
Sbjct: 122 NRRVDLIEEGYDLAFRVGD-LPDSGLIAKKLCSINLRLYAAPSF-AKHR-INTPSDLLKH 178

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248
            L+             +W           R    ++ + +  +M+  + G GI  LP+Y+
Sbjct: 179 PLMLMSAKERSP----DWHLRCGVEKTALRFEPNVRCDDFSMLMRMAIKGLGITELPEYM 234

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            K       L+ I+ D       +Y  YP    +T K++A    +
Sbjct: 235 AKRELAEGTLINILPDWQFEPVDLYALYPSHRGSTPKVRALLTHL 279


>gi|237811263|ref|YP_002895714.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|237504524|gb|ACQ96842.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 327

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/302 (26%), Positives = 133/302 (44%), Gaps = 10/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W +   F  V   GS + AAE L +S  S SR ++ LE  +  +L  R  R L++TE
Sbjct: 1   MDRWAEYEFFVRVVEMGSLSKAAEALSISTPSASRLLATLEKRLDARLIERSTRRLSVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  ++   +    ++S  PSG LR+  ++ L    +   L +F   YP+
Sbjct: 61  VGLTFYARCKTVLDEMNEAEEAAAQTSRSPSGVLRVTASLSLMLQHVATLLPDFTQRYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L+  N+  DI+ +  D AIR R+    S+LI R+L T      A+P Y++    P 
Sbjct: 121 VQVELVAANRYYDITDNDIDVAIRTREDEPDSTLIIRRLATTRRVLAASPAYIQRHGMPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q L KH  + +    P+ +            I  P    L  N    +    + G GI
Sbjct: 181 VPQALPKHKFLGYSYHNPRELT----FQRDGESISIPLTPLLDANDGQIVRVAALDGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KARD 296
              P Y++ D+     L+ ++ D   P  ++   Y        K + F +FI    +A+ 
Sbjct: 237 LAQPMYVIYDDVMAGRLIPLLLDWELPRLSINLVYRRRALIPAKTRVFLDFILEDFQAKG 296

Query: 297 WK 298
           ++
Sbjct: 297 YE 298


>gi|194289613|ref|YP_002005520.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223448|emb|CAQ69453.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 315

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 130/290 (44%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ A+    + +S +SR+I+ LE ++G++L  R  R + +T  G
Sbjct: 3   DLNDLSLFAQVVEHGSFSAASRATGVPKSRLSRRIAQLERDLGVQLLRRTTRQVRVTPLG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     + ++ E  +  ++++  +P G LR++  I + Q LL   +  F+   P ++
Sbjct: 63  ESFYERCRAMLNEAEAAREVIEQAREQPGGTLRVSCPIAIAQILLAPAIGHFMRANPAVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   N+ +D+  +  D A+R+R+ ++ SSL  R      +   A+P  L +   P + 
Sbjct: 123 IELETTNRRVDVIGEGFDLALRVREVMEDSSLAVRTFGESELMLVASPSLLDSIGRPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q LD       G         +         I       L  + +  + +  + G G+A+
Sbjct: 183 QALDGMP--GVGQQPHDGKHVWTLRCKTGDSIQIAYDPRLVTDEFALLREAAIAGVGVAM 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP    +   ++  L  ++     P  T++  +P     T   + F +F+
Sbjct: 241 LPRMFCREALESGELELVLPQYDMPVGTLHAVFPSRKGVTPATRRFLDFL 290


>gi|187924383|ref|YP_001896025.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715577|gb|ACD16801.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 345

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 143/291 (49%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSF  A E+L + +S++SR +  LET++  +LF R  R   LT +G +    
Sbjct: 35  AFMAVASEGSFAKAGERLGVGRSAVSRNVQKLETQLSTRLFLRTTRSTQLTREGQRFFEN 94

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +    L     ++ E     P G +RI++T+  G+ ++   L++F+  YPDI + L+L
Sbjct: 95  CHQGVSHLVEAMNDMLELREGPPRGLVRISSTVGFGRKVVGPLLEQFVKAYPDIAVDLLL 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++ +D + +  D A R  + I+ SS+I ++L+ + M   AAP Y+     P ++ EL +
Sbjct: 155 DDRPMDFASEQIDVAFRSGR-IEDSSIIAKQLIPMQMALCAAPSYVAAHGLPQTLDELCQ 213

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H+ I F     +    F W   VD  + +    + L +N    ++   + GSGIA +  Y
Sbjct: 214 HDCINFRLSSGRV---FEWEFKVDGHVRKYLPTARLTLNDADLVLHAVLQGSGIAQMAGY 270

Query: 248 IVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++D+     LV  +   +      Y CY        +++ F +F+  + R
Sbjct: 271 QIRDHIAANELVVALARHVPDDGGHYICYLSRRHLPTRIRVFIDFMTEQIR 321


>gi|332161959|ref|YP_004298536.1| Lys family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666189|gb|ADZ42833.1| Lys family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 298

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 10/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GSF+  A QL +S S+ISR +S LE  +  +L  R  R L L+E G ++ 
Sbjct: 1   MAIFVKVVETGSFSAVARQLGVSPSAISRSVSRLEKALATRLLQRTTRKLRLSESGEEVF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  + + +   +      + S +P G +R++    +G+ ++  ++ EFL  Y  I +QLI
Sbjct: 61  KRCNAMLNAANSVMEISGQYSQEPEGLIRVSVPKAVGRFVVHPHIPEFLQRYSKIDVQLI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D   +  D  IR+        ++ R+L+ I     A P YL     PL   +L 
Sbjct: 121 LDDRYVDFIDENVDLVIRITNQ-PPPGMVGRQLMNIEHLLCATPEYLSAQGTPLYPHDLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ I  G+        F       + I          N     +   +   GI  LP +
Sbjct: 180 QHSCIYLGETPGDARWKFR---QGTKAITVAVKGRYAANHTGVRLDAVLQHIGIGSLPYF 236

Query: 248 IVK---DNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +       LV+++ +     + S  ++  YP       KL+ F ++I  + RD
Sbjct: 237 TARTALQQGQLVQVLPEWRFISSYSGGLWLIYPPTRYLPAKLRVFIDYIVGRLRD 291


>gi|168235654|ref|ZP_02660712.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736666|ref|YP_002114575.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194712168|gb|ACF91389.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290987|gb|EDY30340.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 302

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 146/300 (48%), Gaps = 14/300 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +  + + ++  V   GSF  AAE L L + +++R +  LE ++G+KL +R  R +++
Sbjct: 1   MQLNMLEAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSM 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G + ++    +  +L+  +     S+  P G+LR+   I L + ++   L +F   Y
Sbjct: 61  TDEGEEFYQRCLLLLSELDDVRRLF-SSTQPPKGRLRLDVPITLARAVIIPALGDFQNRY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI+I L   ++ ID+  +  DC IRL + +  SS + R+L T  M   AAP YL     
Sbjct: 120 PDIEIVLGTSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGT 178

Query: 180 PLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVL 237
           P SI EL K H  + F       ++   W  TVD  I   ++ S + V++  + +   + 
Sbjct: 179 PHSIDELMKSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLA 236

Query: 238 GSGI--ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI   L P    +I   +  L  I+ D   P   V   YP+      K++ F +++  
Sbjct: 237 GLGILHGLRPSLAPFIA--SGELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWLCE 294


>gi|148253444|ref|YP_001238029.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405617|gb|ABQ34123.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 308

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 133/297 (44%), Gaps = 8/297 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L  F  VA   SFT AA +L ++  +IS+ +  LE ++G++LF R  R + LTE G 
Sbjct: 6   LSELTAFVAVAERLSFTKAARELGMALPTISQTVRSLEEDLGVRLFNRTTRSVALTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      V   +      +     KP G LR+      G   L   ++ F   YPDI++
Sbjct: 66  RLLAEVLPVLEGVGQALESINLFREKPIGTLRLTVVRPFGLRQLAPLIRSFSAEYPDIRL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ LD+ ++DI     D  IR+   +     I R L    M   A+P+YL    EPLS  
Sbjct: 126 EIALDDANVDIVKHRFDAGIRVGSGVGRDMKIVRMLDDFAMLTVASPNYLSRHPEPLSPG 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +       +  +  L+   + +  P    L VN    +++  + G GIA L
Sbjct: 186 DLRRHNCLKYRSPGENSIHQWT-LSDGRQKMDVPVEGSLVVNDLDLLVEAALNGVGIAYL 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P  IV+ +     LV ++         ++  +P   +    L+ F  FI    + W+
Sbjct: 245 PRPIVETHLAAGRLVHVLPGWEYMMPGIFLFHPSRRQVPVPLQVFVKFI----QKWR 297


>gi|297343178|pdb|3MZ1|A Chain A, The Crystal Structure Of A Possible Transcription
           Regulator From Sinorhizobium Meliloti 1021
 gi|297343179|pdb|3MZ1|B Chain B, The Crystal Structure Of A Possible Transcription
           Regulator From Sinorhizobium Meliloti 1021
 gi|297343180|pdb|3MZ1|C Chain C, The Crystal Structure Of A Possible Transcription
           Regulator From Sinorhizobium Meliloti 1021
 gi|297343181|pdb|3MZ1|D Chain D, The Crystal Structure Of A Possible Transcription
           Regulator From Sinorhizobium Meliloti 1021
          Length = 300

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 6/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  V  +G+FT A+  L+  +++++  I GLE  +  KL  R  R + +T  G+  + 
Sbjct: 4   RAFLRVVETGNFTRASASLNXPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYYE 63

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             + +   L+     L  +   P G+LR+ T       ++   L EF   YPDIQI L +
Sbjct: 64  RAARLLSDLDELDGSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHKKYPDIQIDLGV 123

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ID   +  DCAIR    +   SLI R++      A A+  +L+    P    +L+K
Sbjct: 124 SDRTIDYLAENVDCAIRAG-TLTDQSLIARRITEXKFVACASRDFLERHPVPQHPSDLEK 182

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            N    G  +PK  +   +         E         N   + +     G G+   P +
Sbjct: 183 -NCYVVGYFLPKTGQQXPFHFRRGNEEIEVSGRYTXAANESTTYLAAARAGLGVIQAPLF 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            V+++      V ++ D       +Y  YP     + +L+ F +++ 
Sbjct: 242 XVREDLRNGTXVPVLPDWQVEPXPIYLVYPPNRHLSSRLRVFADWVV 288


>gi|27375622|ref|NP_767151.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27348759|dbj|BAC45776.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 303

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 141/299 (47%), Gaps = 7/299 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D    +  F     SGS + AA  L  S +++SRQIS LE   G +L  R  R L L
Sbjct: 1   MAMDQLAAMATFVRAVDSGSLSAAARSLPSSLTAVSRQISALEQHFGTRLLVRTTRQLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G  L+     +  +++  +  L  S  +PSG+LR++    +G+ L+   L +FL   
Sbjct: 61  TDDGRMLYERAKSILGEVKEIEEALAGSRREPSGRLRVSAPTLMGRLLIAPLLGDFLHAC 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L+L ++++++  +    A+R+ + I  S L+ RKL  + M   A+P YL    E
Sbjct: 121 PSLSVDLLLVDRNVNLIEEDVHLALRVGR-IPDSQLVTRKLAEVQMIHCASPGYLARRGE 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S  +L +H+ + F D        F   A     I       L VNS  ++      G+
Sbjct: 180 PQSPSDLPRHDCLVFSDAPGAATWRFGRDAKGGSRIRI--AGRLWVNSLDALASAAENGA 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI  +P + V+       L R++ +       ++  Y  +   + K++AF +F+  + R
Sbjct: 238 GIVRVPSWQVERQLAEGRLRRLLREHEPAPAPLHALYQPSRLGSAKIRAFIDFLVERWR 296


>gi|330809375|ref|YP_004353837.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377483|gb|AEA68833.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 297

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 135/290 (46%), Gaps = 6/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D+L +F  VA+  SFT AA +L +SQ ++SR +  LE  +G++L  R  R +  TE G 
Sbjct: 6   YDQLAIFAAVAQERSFTRAAAKLGMSQPALSRAMRQLEERLGVRLLSRTTRSVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L RV +  + +++     L E   KP+GKLRI         +LQ  L   L  +PD+ I
Sbjct: 66  HLLRVVAPRFEEIDNEMAMLSEFRDKPAGKLRITAGEHSAITILQSVLARLLPDHPDLNI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I+D    DI  +  D  +RL   +    +  R    + M    +P Y     +P+  +
Sbjct: 126 EIIVDYGFTDIVAEGFDAGVRLGPQVAKDMIALRIGPDMRMAVVGSPAYFGRYPKPVIPE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  HN I     +P     + W    +    + R+   L  N+    ++  + G G+A 
Sbjct: 186 DLTAHNCINL--RMPTHGGLYIWEFEKNGQELKVRVEGQLVFNTIAMRLEAALQGLGLAF 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P+ +V+D      L+R++ED   P    +  YP   +++      R  +
Sbjct: 244 MPEDLVQDAVAQGRLIRVLEDWCEPFSGYHLYYPSRRQSSPAFTLLREAL 293


>gi|300705096|ref|YP_003746699.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299072760|emb|CBJ44113.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 305

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 144/299 (48%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAAARLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S     +E       E    P GK+R+    D+G+ L+   +  F+  YPDI
Sbjct: 61  GQSLYQVASHALEDIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMREYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQRQGAPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H+ + F        +    L   D        + L  +S   +      G+GI 
Sbjct: 180 VRDLGHHSCLDFRGTGRGETQWR--LVGPDGLKTVAVRARLNADSLSYLETLIASGAGIG 237

Query: 243 LLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP Y   + + N   P LVR++ D  T    ++   P A     +++   + +    R
Sbjct: 238 PLPLYAGGVARANAPLPRLVRVLPDYATSGEPLHLVTPTARFVPKRVRLLIDMLTDAIR 296


>gi|148652987|ref|YP_001280080.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148572071|gb|ABQ94130.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1]
          Length = 299

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 144/294 (48%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GS + AAE L ++ S++SR ++ LE ++   LF R  R L LT
Sbjct: 1   MKVTLNELDTFISIVDTGSISQAAEYLDVTVSAVSRSLARLEKKLDTALFRRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G         V + LE  +  L ++   PSGKLRI        +++   + ++   YP
Sbjct: 61  QEGEMYLARIRGVLNDLEAAEDMLIKNKAVPSGKLRIDAATPFMLHVIAPLMTKYSQAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I+L+ +   +D+  +  D AIR+ + ++ S+L    L    +   A+P YL+    P
Sbjct: 121 QIDIELVSNENLVDLLEERTDVAIRIGE-LKDSTLNATPLGLSQIRILASPAYLQRQGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+++L  H L+ F + +PK  +   + A  +    +  I   + +S  ++ Q  + G+G
Sbjct: 180 QSVEDLAHHQLLGF-NALPKLNDWPIYDAFNNLFHAQTNI---KADSGETLRQLALCGTG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
           I  L D++ + +    R++E   + +      +   Y +  K + ++ +F +F+
Sbjct: 236 IVCLSDFMTQQDIKEGRLIELFASSTIKMQQPINLVYYKNRKLSQRVSSFIDFM 289


>gi|33599427|ref|NP_886987.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
 gi|33567023|emb|CAE30936.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
          Length = 340

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 145/295 (49%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++VF  V  + SFT AA+ L L +++++  I GLE  +G++L  R  R ++LT 
Sbjct: 1   MDRFQAMQVFVRVVEANSFTRAADALVLPRTTVTTVIQGLERHLGVRLLNRTTRRISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++  + +  ++E T+   Q+++ +P G+LR+     +G+ +L   L EF   YPD
Sbjct: 61  DGAAYYKHATRILAEVEETEACFQDAAARPQGRLRVDVPPCIGRLVLIPALCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + + ++ +D+  +  DC IR  + ++ SSL+ R++ T      AAP YL     P 
Sbjct: 121 IELVIGMGDRRVDLVQEAVDCVIRSGE-LEDSSLVARRIGTFQTLTCAAPSYLARKGMPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++Q L +H  + +     +     +W   VD       +   + VN   + +   + G G
Sbjct: 180 TLQALAEHQAVHYFSATGRNC---SWDFVVDGKETLVDVPGVVSVNDLSAHLACGLQGFG 236

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     YI      + +L+ ++         +   Y ++ + + K++ F +++  
Sbjct: 237 LIQTARYIALPHLQSGDLIEVLPQWKPKPVPMSLLYLQSRQLSPKVRVFSDWVAE 291


>gi|313500382|gb|ADR61748.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 302

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L  R  R L+LT 
Sbjct: 1   MDRLNAMRVFVTVIDLGSQSAAADYLQLSRPVVSRYLAELEDWVGTRLMQRTTRKLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       Q  +Q+    P G LRI+ +   GQ  L   +  ++  +PD
Sbjct: 61  AGQETLPRCRQLLELAGDLQAAVQQPEDSPRGALRISVSTSFGQAQLVDAVAAYVRRFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L + ++ +++  +  D AIR    +   SLI R+L        AAP YL     P 
Sbjct: 121 VKVELQMLDRTVNLVDERIDLAIRTSNDV-DPSLIARRLSVCRSVVCAAPAYLNERGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL +HN +T               A   + +  P    +  N  +++ +  + G+GI
Sbjct: 180 RVEELSQHNCLTHAYFGHSLWH----FAVAGQQVAVPVSGNISANEVMTLQRAALAGAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP +   D      LVR++ +       +   Y         L++  +F+  + +D
Sbjct: 236 AMLPTFQAADAIRRGELVRLLPEAKPRELNLNAVYTSRKHMPATLRSMLDFLVQRFKD 293


>gi|117918705|ref|YP_867897.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611037|gb|ABK46491.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 305

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +++F  VA   SFT A+  L LS++ +S  ++  ET +G +L  R  R + LT
Sbjct: 1   MQDRLQAMQIFMRVAELESFTQASISLGLSKTHVSNVVAQFETALGARLLQRTTRTVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +     +    +  +   Q  + + SG+LR+  +  + +NL+  +L +F+  YP
Sbjct: 61  QDGISCYERCKNLLTDYQELESLFQLQATQISGRLRVDMSTGIARNLVLPHLPDFIEQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ +DI  +  DC IR+   +Q   +I +K+    M    +P Y+     P
Sbjct: 121 QIELELSSTDRKVDIVAEGFDCVIRVGS-VQQEGVIAKKIGHFKMLNCVSPSYITKYGRP 179

Query: 181 LSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLG 238
            +I+EL   H LI +   +      F +L+  +  +    +  L  VN+  +    C+ G
Sbjct: 180 SNIEELSHGHKLIHYVGQLGGSDSGFEYLSQDNHELCALALPKLITVNNADAYSAACLAG 239

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI   P+  V        L+ I+ D   PS  V   YP     + +L+ F  ++  
Sbjct: 240 LGIIQAPNIGVAKYLQTGELIEILPDYPAPSMPVSLLYPHRRHLSKRLQVFMAWLTE 296


>gi|330816651|ref|YP_004360356.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327369044|gb|AEA60400.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 313

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 127/294 (43%), Gaps = 5/294 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFMRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++     +GQ+        +   YP+
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHCMTSMGQHYTVPLAARYRQRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L L  +  D+  +  D +I L + +  S L+ ++L        A+  YL+    P 
Sbjct: 121 VQVDLTLAQRLPDLLDEGFDVSIVLGRELPDSGLVSQRLGETFSVVCASRDYLERHGVPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +LD H  +          +++  L                VN   ++      G G+
Sbjct: 181 RPSDLDAHTCMGMV-APGFQWDEWTLLGPDGNETLSVASPPFSVNVAEALAVAIREGMGV 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP Y       N + VR+M +  +    +Y  YP       K++ + +F+  
Sbjct: 240 GVLPLYTAITGLRNGDFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFMRE 293


>gi|331656361|ref|ZP_08357323.1| LysR-family transcriptional regulator [Escherichia coli TA206]
 gi|331054609|gb|EGI26618.1| LysR-family transcriptional regulator [Escherichia coli TA206]
          Length = 288

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 6/286 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           ++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G ++  
Sbjct: 1   QIFLVVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAGERIIA 60

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  +LE     L + +  PSG +R++      ++L+   LK FL  YP+I ++L++
Sbjct: 61  CLEPRIDELEQELESLIQLNGTPSGNIRLSAGEHAARSLVWPKLKPFLREYPEINVELVV 120

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           DN  +DI     D  IRL + +    +  R    + M    AP Y      P +  EL  
Sbjct: 121 DNGFVDIVEGRFDAGIRLGENVDKDMVAVRIGPDMRMAVVGAPAYFAANPAPETPHELQN 180

Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I     +P     ++W      +P+       L  +     +   + G GIA +P+ 
Sbjct: 181 HRCINM--RLPTAGGLYHWEFEREGKPLRVKVDGQLTCSPLPERIDAALSGFGIACVPED 238

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V+   ++  L++++++        Y  YP   ++        + +
Sbjct: 239 MVQEYIESGKLIQVLQEWCPTFPGYYLYYPSRKQHPPAFALLIDAL 284


>gi|290508738|ref|ZP_06548109.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289778132|gb|EFD86129.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 306

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 137/296 (46%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + +KL +R  R L +T 
Sbjct: 1   MDRFDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAVYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ  + + ++ +D+  D  DC +R    I   SLI R +  + +  Y APHY++    P 
Sbjct: 121 IQFDMGVSDRVVDLIGDNVDCVLR-GGEITDQSLIARHVGDLQIGVYVAPHYVERLGAPA 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL    H ++ F     + ++    L +    I       L V+   + ++  + G 
Sbjct: 180 HPRELQNTDHRIVGFVSSRSRKIDPLV-LRSESEQIEITGNYVLAVDDGNAYLEAGLAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+   +     L+ +          ++  +P      GKL+ F ++I  
Sbjct: 239 GVIALPIYMAAAHQAVGALIPLFTQWRISPMPLHLAFPPNRHVNGKLRVFIDWIVE 294


>gi|163795192|ref|ZP_02189160.1| Transcriptional regulator [alpha proteobacterium BAL199]
 gi|159179590|gb|EDP64119.1| Transcriptional regulator [alpha proteobacterium BAL199]
          Length = 305

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 8/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F  V   GSF+ AA +L LS+S++S+QI+ LE  +G +L  R  R L LTE G
Sbjct: 5   NLTAMASFARVVEEGSFSKAAVRLGLSKSAVSKQIARLEDRLGTRLLNRTTRRLALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L+     +  + E  + E      +PSG LR++T +  GQ  L  ++   L  +P + 
Sbjct: 65  TRLYDRCQRIVAEAEAAEAEAGSMQTEPSGLLRVSTGMSFGQEHLAAHVPALLERHPGLS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L+++ +D+  +  D A+R+ + +  S LI R+L  +     AAP YL     P   
Sbjct: 125 LELVLNDRIVDLVEEGYDVALRIAE-MPDSPLIARRLAPVRRILAAAPSYLARRGIPALP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  + +      C                 PR+     N+  ++        GI 
Sbjct: 184 KDLQDHGCLGYSYSAGGCTWTLVGTDGTHHSHRFRPRVLANNGNALAAMAAAGS---GIV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +P +++        LV ++ D   P   +Y  YP       K++AF +F      D
Sbjct: 241 QMPTFMLSRYLKEGTLVPVLADFEPPPVGLYAVYPPGRPLAAKVRAFIDFAVATFTD 297


>gi|237509186|ref|ZP_04521901.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|235001391|gb|EEP50815.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 299

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  ++  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTANLVDERIDLAIRITNAV-DPSLIARRLGTCRSALCASPGYLAEHGVPKRPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++    G GIALLP 
Sbjct: 185 TRHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAATAGGGIALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      LVR++ D   P   +Y  Y    +    ++   +F+  +  D
Sbjct: 241 FAAAEPIRTGALVRVLPDCAAPELGIYAVYASRKQMPLAMRTMIDFLAERFGD 293


>gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151280349|gb|ABR88759.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 308

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 138/300 (46%), Gaps = 7/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F ++ + GS   AA++L ++  S+S++++G+E+ + ++L  R  R ++LT 
Sbjct: 1   MDGISDLAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G       + +  +LE  +  +   ++   G L+++ T   G+  +   L  F  LYP+
Sbjct: 61  EGEIYLADGTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHITPQLSAFARLYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL L ++ +++     D  IR  + I  + L  RK+        A+P YL+    PL
Sbjct: 121 VEVQLHLTDRPVNLVEQGFDADIRFGQ-IPDARLSARKIADNRRLVCASPAYLQKHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +HN I   +   +    +++ + + +   + R   L  N       + + G GI
Sbjct: 180 VPRDLQQHNCILLRE-SDEIYGSWHFSSGIKQETVKVR-GALSANDGECATSWALDGQGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +  ++ V     +  L  ++E+   P   +Y  +P     + K +A  +F+       +
Sbjct: 238 VVRSEWDVAPYLRSGRLRAVLEEWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAFEGQR 297


>gi|289625131|ref|ZP_06458085.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648700|ref|ZP_06480043.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868002|gb|EGH02711.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 305

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMIVIPALPEFARRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 IRLEIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLQRYGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H +I +            ++A     +       + VNS    +  C  G G+
Sbjct: 180 NLPDLAQHQVIEYFSTSTGKRYGLEFMAD-GVEVDRALACSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V        LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWLVE 292


>gi|94312803|ref|YP_586012.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
 gi|93356655|gb|ABF10743.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
          Length = 307

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 127/291 (43%), Gaps = 4/291 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   A +GSF+ AA +L L+ ++IS+ ++ LE  +G++LF R  R LTLT  G 
Sbjct: 4   LNLLESFIQSAETGSFSAAARRLGLTPAAISKNVARLENHLGLRLFQRSTRRLTLTMGGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +  S+ +  L        +   KP+G LR++  +  G+  L   L EFL  YP I  
Sbjct: 64  QFLQQVSDPFSTLRDAFASAAQEDGKPAGVLRVSMGVAFGREYLVPLLGEFLARYPGIVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               +N+ +D+     D AI     +    ++ R+L   ++   A+P Y+K+   P    
Sbjct: 124 DWHFENRTVDLIAGGFDAAIGGGIELT-EGVVARELARTYVVVAASPAYMKDRAMPRHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L   + I         +  +N    +         + + ++   ++    + G GIALL
Sbjct: 183 DLAGFDGIVRRSASTGRLRHWNLRNQIGEQALAEMRTRVILDDPEAMAHAAMSGLGIALL 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P        ++  LVR++      +  +   YP       K + F +FI  
Sbjct: 243 PMPHAAPWLESGALVRLLPGWYADNGPIVLYYPNRKLLPPKTRVFIDFIAE 293


>gi|310765471|gb|ADP10421.1| Transcriptional regulator, LysR family [Erwinia sp. Ejp617]
          Length = 302

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 132/295 (44%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M    D+LR    F     SGSFT AA +LHL+ S++S+ I+ LE  +G +LF R  R L
Sbjct: 1   MPVSEDRLRGIAPFVASVESGSFTAAAGRLHLTSSAVSKSIARLEARLGSRLFERTTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G   +   + V  +L   +  L      P G+LR+A     G+  +   L +F  
Sbjct: 61  LLTDAGQAFYDTCARVLSELAEAESVLAAQRSIPVGRLRVAVPHTFGRLHVMPLLNDFCR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN 176
            +P++Q+ L   ++ +D+  +  D A+R+  P     SL  R L +  +   AAP YL  
Sbjct: 121 QHPEMQLNLSFSDRFVDLFEEGVDMAVRIGGPGNYPPSLGVRYLGSERLIFCAAPDYLAQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P S+ +L++H  I +   I      ++  +   R         + +    +     V
Sbjct: 181 HGTPQSLAQLEQHQAIVYA-RIDGSTSPWHVASPDGRITTRTVAHRMALADGEAQRSAVV 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            G G+A +  +++++      LV ++  +  P   +   +P   +   K+ A  N
Sbjct: 240 AGLGVAQMATWLMEEQLARGELVPLLPQLAVPGLPLCVVWPRRKQLMPKVDALLN 294


>gi|259415005|ref|ZP_05738928.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259349456|gb|EEW61203.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 317

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 132/299 (44%), Gaps = 10/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D D+L  F  V   G+ T  A +L+LS+S IS++IS LE E+G  LF R+A  +T T
Sbjct: 15  MRYDLDQLETFLAVLELGTVTATAARLNLSKSVISKRISDLELELGTALFRRNAGRITPT 74

Query: 61  EQGSKLHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           E   +           L T  +      + +  G L I   +  G   L   L  F    
Sbjct: 75  ESAQRFAERIRPALADLRTAAEAAAWGGAEQLRGTLSITAPMSFGTLHLSPILATFAARN 134

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + +++  D++ ID++ D  D A+R+  P++ S+L+ RKL      A A+  +L     
Sbjct: 135 PGLSLRIEYDDRIIDLARDGVDLAVRIG-PLRDSALMVRKLCDDVSVACASSDFLNRHGR 193

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLG 238
           P + Q+L     I +  L    +    W   V R    P +  +  VN+  ++    +  
Sbjct: 194 PETPQDLTGLPAIGYSHLPNSEL----WRFKVGRRDLRPAVKEIATVNNGEAMRDLAIAR 249

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G A+LP +I      +  L R++ D  T    +   +P+      KL+   +F+  + 
Sbjct: 250 LGFAMLPGFIALPAIADGKLERVLPDAATRDMPISAVWPQVQPLPAKLRTLIDFLADEL 308


>gi|221068165|ref|ZP_03544270.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713188|gb|EED68556.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 303

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V   GSF+ AA    ++ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFARVIEWGSFSAAARACGMTPSAVSKLVARLEQRLGTRLVNRSTRQLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   L+  +     +   P G+LR+   +  G + L   + +FL  +PD+ + +
Sbjct: 71  YERGVRILADLDEAER-CASTHTAPRGRLRVNANVPFGHHFLLPWVPQFLARHPDVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  IDI     D A+R   P++SS+L+ RKL    M    AP YL     P + QEL
Sbjct: 130 VLTDAVIDILEQRTDVAVRAG-PLKSSNLVARKLGATRMVIVGAPSYLARHGTPTTPQEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +       +                 P     Q +   ++    + G G+  L  
Sbjct: 189 LAHNCLGANYARAQPGWPMR---KTGEDSVHPVTGNAQASDGEALRHLALAGLGLTRLAA 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKA 294
           + V+++     L+ ++ED        V+  Y  +      +++AF +F+  K 
Sbjct: 246 FQVREDIAAGRLLPVLEDCNPGDIEEVHAVYVGQGGYLPLRVRAFLDFLAEKV 298


>gi|119945159|ref|YP_942839.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
 gi|119863763|gb|ABM03240.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
          Length = 311

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE   L+ S +S++I  LE ++G++L YR  R LT++E G  
Sbjct: 16  DDLILFAQVVEEGSFSKVAELNSLTNSVVSKRIKRLEADLGVQLLYRTTRKLTVSEAGKV 75

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++    V          +       +G L+++     G  +L G + EF  ++P   + 
Sbjct: 76  LYQGAKNVKQAALEAIDAVYGYGESVTGHLKMSVPSISGDLVLAGAVAEFCSMHPGFSVD 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N  IDI  D  D  IR    +  SSLI R L+       AAP Y+K   +P++ ++
Sbjct: 136 MSLENSFIDIVGDGYDLVIRTGY-LADSSLIARHLIDSQWVICAAPAYIKRFGKPMTPED 194

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + +        E       ++             ++  ++ +  + G G+A +P
Sbjct: 195 LINHNCLQYAYQTTGASEWE--FKGINGNYIVKVAGNFSTDNATALRKAALGGYGLAYVP 252

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +    +LV I  + +     +Y  YP + +   K++     I  +
Sbjct: 253 KCLVYPDLLKGDLVDIFPERVGKKLGIYAVYPFSRQPPLKIRMLIEHIRER 303


>gi|167587367|ref|ZP_02379755.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 302

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 141/300 (47%), Gaps = 9/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE+ +G++L +R  R  TLT++G
Sbjct: 5   DLPALETFARIVSAGSLSAAARELDLSLSVVSKRLAHLESRLGVRLLHRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  +Q+     SG LR+    +LG+  L   + EF   +P + 
Sbjct: 65  AQFHAQVLRILAEIEQAEALMQDRRGTVSGLLRVTAPGELGRLRLAPLVAEFQRRHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  SS+I R+L         AP YL    EP   
Sbjct: 125 VQLMLTDSVVDLLAHEIDVAVRIGS-LADSSMIARELAPNRRVLCTAPAYLAEHGEPAHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H  I  G+ +                +G    + L  N   +     + G+GIAL
Sbjct: 184 GELCRHRCIVMGEQLRAEWR----FNGEGGAVGVEVTAALLTNDGGAARTLALAGAGIAL 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR-DWKF 299
              + V  +     LVR++     P+  ++  YP       +++AF +F+  + + +W +
Sbjct: 240 KSIWDVGPDLEAGRLVRVLPAYAAPAAPLHAVYPGGRHLAMRVRAFVDFVRERLQAEWCW 299


>gi|126739085|ref|ZP_01754779.1| probable transcription regulator protein [Roseobacter sp.
           SK209-2-6]
 gi|126719702|gb|EBA16410.1| probable transcription regulator protein [Roseobacter sp.
           SK209-2-6]
          Length = 299

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +   V   G+F+ AA  L  + S++ +++  LE  + + L  R  R +TLT  G + 
Sbjct: 6   ELEILLAVVDHGNFSAAARALGYTPSAVGKRVHQLEQRLKVPLLVRSTRRMTLTGAGRRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E++ +L   + ++ + +    G +R+ ++  LG+  +   + EF+  +PDI+I+L
Sbjct: 66  VEEARELFVRLTALEDDITDDADTLRGTIRLTSSAALGRLHVVPLVIEFMERHPDIEIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL +K ID+  D  D AIR    +  SSL+ R+L++     +AAP YL+    P   ++L
Sbjct: 126 ILTDKIIDLISDGFDLAIR-SGILPDSSLVSRRLMSNRRRPFAAPAYLEQHGVPEKPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +  G         FN     +  +G         NS  ++   C    GIA LP+
Sbjct: 185 VTHKCLRLGQERQVSDWGFNGRQGGNVRLG----PGFLCNSLEALHAACCAERGIAWLPE 240

Query: 247 YIVKD---NPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++V +      LV ++ED         V+   PE      +++   +F+  +
Sbjct: 241 FLVSNGVHEGRLVPLLEDYTESDAGGGVFILRPETAFLPRRVRTMVDFLADR 292


>gi|217972029|ref|YP_002356780.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217497164|gb|ACK45357.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 303

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 140/293 (47%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIENTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPGYLKLKGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  HN I  G      +      +       + ++   +VNS + + Q  +   GIA+
Sbjct: 182 KELSLHNGILLGTSRSAPIWPLGKGSRKTMANFQRKV---RVNSPIMVKQLAMDDFGIAM 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L +   K    N  LV I+++     F VY  Y    +    +  F +F   +
Sbjct: 239 LSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISVFLDFFVKR 291


>gi|53721886|ref|YP_110871.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|52212300|emb|CAH38323.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
          Length = 299

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPAVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAV-DPSLIARRLGTCRSALCASPGYLAEHGVPKRPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++    G GIALLP 
Sbjct: 185 TRHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAATAGGGIALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      LVR++ D   P   +Y  Y    +    ++   +F+  +  D
Sbjct: 241 FAAAEPIRTGALVRVLPDCAAPELGIYAVYASRKQMPLAMRTMIDFLADRFGD 293


>gi|217418713|ref|ZP_03450220.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217398017|gb|EEC38032.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 299

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPTVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAV-DPSLIARRLGTCRSALCASPGYLAEHGVPKRPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++    G GIALLP 
Sbjct: 185 TRHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAATAGGGIALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      LVR++ D   P   +Y  Y    +    ++   +F+  +  D
Sbjct: 241 FAAAEPIRTGALVRVLPDCAAPELGIYAVYASRKQMPLAMRTMIDFLADRFGD 293


>gi|312113830|ref|YP_004011426.1| LysR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311218959|gb|ADP70327.1| transcriptional regulator, LysR family [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 304

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 128/300 (42%), Gaps = 7/300 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    L  F  VA   SFT AA +L  SQSS+S  I  +E  +G++L  R  R +  
Sbjct: 1   MKRDELGDLFGFLTVAEERSFTRAAARLGTSQSSLSHMIRRMEERMGVRLLTRTTRSVAP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L       ++ ++T    +     KP+G +RI ++    + +L   + + +  Y
Sbjct: 61  TEAGEQLVATLRPAFNDIQTRLDSMSALRQKPAGTIRITSSRHATETILMPAVMQLMADY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI++++ +D +  D+  +  D  +RL + ++   +  +    + M    +P Y     +
Sbjct: 121 PDIKVEISVDQRLTDLVAERYDAGVRLGEQVEKDMIAVKIGPELRMTVVGSPAYFAQHPK 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P +  +L +H  I     +P     + W      RP+          N    I+   V G
Sbjct: 181 PATPHDLTQHVCINL--RLPTLGGLYAWEFEKNGRPLNVRVDGQFTCNDVPMIIHAAVNG 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+A LPD   KD      LVR++ED   P    +  YP   + +         +   +R
Sbjct: 239 LGLACLPDDQFKDLIEEGRLVRVLEDWCPPFPGYHLYYPSRRQPSPAFVLLVEALRSSSR 298


>gi|222081616|ref|YP_002540980.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726295|gb|ACM29384.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 307

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +  F   A   S+  AA     S S+I + +  LE  +G++LF R  R ++LTE+G
Sbjct: 3   SLTGIAAFVHAAEQQSYVAAARVTGASPSAIGKAVGRLEARLGVRLFNRTTRSMSLTEEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +     +   L   +  + +S  +P+G+LR++    +G +L    L+ F+  +P I+
Sbjct: 63  AVFYERCKRIIDDLGDAEAAILQSRERPTGRLRVSMPHIVGHHLFMPILRSFVESFPGIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +  +++ +D+  +  D  +R  + +  S LI R L   H     +P Y++    P + 
Sbjct: 123 LDIDFEDRVVDLVAEGVDLVVRSGE-LADSGLIARVLGQQHFVICGSPEYVERRGRPQTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I F       +  + + A  DR I       L  N+  + ++  + G G++ 
Sbjct: 182 ADLAGHACIHFRYPSSGRIALWAFQAPHDRLILPKN---LIFNNTDAGLRATLDGLGLSH 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+ +    +  L  ++   + P  ++   +    + + K++AF +F+  + 
Sbjct: 239 LPVYVAEPYIRSGILTPVLTSFMVPFGSLSLVWQSNRQLSPKVRAFVDFMVERL 292


>gi|217423379|ref|ZP_03454880.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217393237|gb|EEC33258.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 350

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 54  DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 113

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 114 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 173

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 174 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 232

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 233 ADLCAHRCIVLGEQPR-----VEWRFDGSHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 287

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W++
Sbjct: 288 KSIWDVGPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 347


>gi|313108447|ref|ZP_07794451.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa
           39016]
 gi|310880953|gb|EFQ39547.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa
           39016]
          Length = 303

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 135/293 (46%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  SG F+ AA +  ++ S++S+ I+ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCTF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   LE  +      +  P G+LR++  +  G + L   + EFL  +P++ + +
Sbjct: 71  YERGVRILADLEEAER-CASENAAPRGRLRVSANVPFGHHFLLPLVPEFLAQHPEVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +DI     D A+R   P++SSSL+ RKL +  M    AP YL     P + Q L
Sbjct: 130 VLTDEVVDILEQRTDVAVRAG-PLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQAL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +    +  +       L      +  P     Q +   ++ +  V G G+A L  
Sbjct: 189 LGHNRLGANYVRTRSGWP---LRDAGEELVVPLSGNAQASDGEALRRLAVAGLGLARLAA 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKA 294
           + V+++     L+ ++E         V+  Y  +      +++AF +F+  + 
Sbjct: 246 FQVREDIAAGRLIPVLEAYNPGDLEEVHAVYVGQGGYLPLRVRAFLDFLAERV 298


>gi|262394854|ref|YP_003286708.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262338448|gb|ACY52243.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 314

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 129/292 (44%), Gaps = 9/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  SFT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVIFSALLKHKSFTAAAKSLGVSVSHVSKQLSQLEASLGIKLVQRTTRSFTPTEAGKTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +V   + +  +E++    + +G +R+  +   G   +   ++E   LYP +Q+++
Sbjct: 68  FHHCEQVVQAVSSATLEMETQRDEVAGLVRLGLSQSFGTLHIIPAIQELRELYPQLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  +   + +     I ++L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMLAEGLDLWVTNNEHLP-EGYIAQRLTDCQFVVAASPDYLLKHDTPTEPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + +        +   W  T D+     ++S    V+   ++    + G GIA L 
Sbjct: 187 SSHNCLIYRS---WERDYTGWAFTKDQQELNVKVSGNYSVDLAEAVRDAAIAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            Y++ D      L++++ D   + S   Y  YP       K+ A  NFI  K
Sbjct: 244 TYLLGDEFRTGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVINFIKQK 295


>gi|190573113|ref|YP_001970958.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011035|emb|CAQ44644.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 291

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 126/291 (43%), Gaps = 10/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               ++ F  VA  GSF  AAEQL +S   + + I  LE  +G  L  R+ R   LTE G
Sbjct: 3   TLRCMQAFVAVAECGSFAGAAEQLQVSAVMVGKYIQQLEAHLGTALLQRNTRRQRLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S       +V  +++  + ++    V+P G LR++     G  +L   L   L   P + 
Sbjct: 63  SAYLAGCRQVLEQVQQAEADVAGLQVQPRGLLRVSAPTTWGSCVLAPQLAGLLRAQPQLN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N+ +D+  D  D AIR+  P+ S  ++ R L    M   AAP YL+    P + 
Sbjct: 123 VELDLSNRRVDLIEDGFDVAIRVG-PLPSQEVVARPLPPYAMSLCAAPSYLRRRGTPRTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L+ H+ ++             W       +     + L  N  +++ +  V G+G+ L
Sbjct: 182 ADLEGHDCLSH----LAWRGGHGWQLANGEQVDWE--ARLTCNDGVALREAAVAGAGLVL 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            P  ++        L  ++ D +     ++  Y    +   +L+ F +F+ 
Sbjct: 236 QPTALLAGEIAAGRLKPLLRDYLPEPRPMHLIYLPDRRPRPRLQCFVDFVM 286


>gi|260775854|ref|ZP_05884750.1| transcriptional regulators LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608270|gb|EEX34439.1| transcriptional regulators LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 301

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 7/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V  +GSF+  A++ + +Q++IS++++GLE ++G KL  R +R  TLTE G   
Sbjct: 6   AMRSFIRVVETGSFSAVAKEQNTNQATISKRVAGLEKKLGTKLLVRGSRRHTLTEAGQAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               S +   ++  + E +  +  P G L+I      G   +   + EFL  YPDI + +
Sbjct: 66  FERVSHIVAAIDEAEAEARSLTATPKGHLKITVPTMFGSLYVAPVISEFLASYPDIDLDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             D   + +  +  D AIRL   +Q SS++ + L    +   A+P YL+    P  ++EL
Sbjct: 126 KFDENLVALVKEGIDVAIRLGD-LQDSSMMAKTLGYDELIMVASPTYLERHPAPTRLEEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + HN + +  L PK    + +  T       P     Q ++ + + +  +  +GIAL+P 
Sbjct: 185 NAHNCLIYS-LSPKRGTVWTFNRTPG-ASEIPVSGNFQCDNGIGLKEMLLAHAGIALMPR 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++V       +LV ++ D     + +   +        K++ F  F+
Sbjct: 243 WMVDKELRTGDLVHLLPDYAK-RYPISAVFTNNQYVPLKVRVFLAFM 288


>gi|326316212|ref|YP_004233884.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373048|gb|ADX45317.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 309

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R++  V  +G+FT AA+ L L ++++++ +  LE  + ++L  R  R +T+T 
Sbjct: 1   MDQIQAMRIYARVVEAGTFTRAADSLQLPKATVTKHVQALEARLRVRLLNRTTRRVTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +    +  +  +  +   PSG+LR+     + + L+  +L+EF   YPD
Sbjct: 61  DGAAYYDRAVRLLADFDDIEASMTHARATPSGRLRVDVGTSMARLLIIPHLEEFQSRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ++L + ++ +D+  D  DC IR    +   SL+ R++  +     A+P YL+    P 
Sbjct: 121 IQLELGVSDRIVDLLSDNVDCVIR-GGELTDQSLVARRIGLLEFITVASPAYLERHGTPR 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGS 239
              +L++ H  + +    P+    +      D    E    S L VN   + +   + G 
Sbjct: 180 EPLDLERGHQSVIY--FSPRTSRRYPLEFHRDGESLEIGGPSRLAVNESNAYLAALLAGR 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +     +   D  +LVR++ +   P   VY  YP     + K++AF ++
Sbjct: 238 GVGQITTMQAQRYVDRGDLVRVLPEWSHPLLPVYVVYPPNRHLSAKVRAFVDW 290


>gi|261253478|ref|ZP_05946051.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
 gi|260936869|gb|EEX92858.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
          Length = 323

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 122/288 (42%), Gaps = 7/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  +FT AA+ L +S S +S+Q++ LE+ +GI+L  R  R  T TE G   
Sbjct: 18  QMVVFAALLKHKNFTLAAKSLGVSVSHVSKQLASLESSLGIQLVQRTTRSFTPTEAGQDY 77

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +++   ++  Q E++    + +G +++  +   G   +   + E    YP +Q++L
Sbjct: 78  YEHCAKIVEIIDEAQREVECQRDEVAGLVKLGLSQSFGTLHIIPAINELRERYPKLQVEL 137

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++   H    A+P YL     P    +L
Sbjct: 138 HLFDYKVDMLEEGLDLWITNNEHLP-EGYVAQRIADSHFVVAASPDYLVKNTTPTHPNDL 196

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN + +              +  D  +         V+   ++    V G GIA L  
Sbjct: 197 AGHNCLIYRSWERDYTRWA--FSNHDEQLNIKVSGNYSVDLAEAVRDAAVSGWGIAYLAT 254

Query: 247 YIVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           Y+++D   N  L+++  D         Y  YP       K  A   FI
Sbjct: 255 YLIRDEFKNGQLIQLFPDWCASQVMPFYAVYPSRRYLPKKTAAVIEFI 302


>gi|253687749|ref|YP_003016939.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754327|gb|ACT12403.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 314

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + +KL +R  R L +T 
Sbjct: 1   MDRFDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAVYYERVIRLLADMEDAENSLSSAAITPKGRLRVDVPSPLARLVLVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ  + + ++ +D+  D  DC +R    I   SLI R +  + +  Y AP Y++    P 
Sbjct: 121 IQFDMGVSDRVVDLIGDNVDCVLR-GGEINDQSLIARHVGDLQIGVYVAPSYVERLGVPA 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL+   H ++ F       ++    L      I       L V+   + ++  + G 
Sbjct: 180 HPRELENTDHRIVGFLSSRTGKIDSLV-LHGESEHIEIKSSYVLAVDDGNAYLEAGLAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+   +     L+ + E        ++  +P       KL+ F ++I  
Sbjct: 239 GVIALPVYMAATHQACGALIPLFEQWRINPMPLHLAFPPNRHVNAKLRVFIDWIVE 294


>gi|254300213|ref|ZP_04967659.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157810202|gb|EDO87372.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 299

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G +L +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARLLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPTVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAV-DPSLIARRLGTCRSALCASPGYLAEHGAPKRPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++    G GIALLP 
Sbjct: 185 TRHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAATAGGGIALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      LVR++ D   P   +Y  Y    +    ++   +F+  +  D
Sbjct: 241 FAAAEPIRTGALVRVLPDCAAPELGIYAVYASRKQMPLAMRTMIDFLADRFGD 293


>gi|262089730|gb|ACY24824.1| LysR family transcriptional regulator [uncultured organism]
          Length = 290

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 8/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA +GSF+  A+Q+ +S++ ++R IS LE  +  +L  R  R +TLT+ G +  
Sbjct: 1   MRVFSQVAANGSFSATADQMEMSRAMVTRCISELEEWLNARLLQRTTRKVTLTDAGEQFL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++    +    E    + + SG+LR+  +   G + +   + +FL L+P ++I + 
Sbjct: 61  RRCQQILTLTDEVIEETANLNSELSGQLRLTCSASFGYSQMASAIADFLALHPKLKIDMN 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  I++     D AIR+        LI R+L +      A+P YL+    P S + L 
Sbjct: 121 VSDVSINLVDARVDLAIRISSN-PDPMLIARRLGSCASILAASPKYLEQFGTPESPESLV 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +T         +      T    I     S    N    ++   + G GI + P Y
Sbjct: 180 HHRCMTHTIAGKYLWQFTRATETTKIEIN----SHFSTNDASILLHAAIAGGGITMQPTY 235

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  D      LV ++ D   P   +   YP        L+A  +F+  +
Sbjct: 236 LANDYIRAGKLVALLPDWSVPEMAINALYPSRRHMPAALRALLDFLVKR 284


>gi|237749257|ref|ZP_04579737.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gi|229380619|gb|EEO30710.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 303

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 133/293 (45%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F      GS   AA    ++   + R+I  LE  +GIKL +R  R LTLTE
Sbjct: 1   MDKIKQIEAFVNATEKGSLAKAALGQGVTPVMLGRRIDALERRLGIKLMHRTTRHLTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+       ++  +L+  +  + E   K +G L ++     G+  +  +   FL   PD
Sbjct: 61  RGTVFFDQCKKILDELDQAEKMIGEGLNKATGHLIVSAPAAFGRKHVAPHAPAFLAANPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I   L ++ +D+  +  D +IR+   I   SLI   L + H    AAP YL+    P 
Sbjct: 121 VKISFNLSDQVVDLVREGYDLSIRIGGTI-DPSLIAVNLYSNHRVVCAAPDYLEKHGVPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           ++++L +HN +TF     +  +   W    +      R +  L  N    + ++C+ G G
Sbjct: 180 NLKDLSQHNCLTFNL---QGGQQRGWHFNENNKTVIIRTAGNLDCNDGELLHRWCLEGYG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + ++    +  LV +++D   P++ +   YP+      K + F + +
Sbjct: 237 LAWRSTWEIQSELASGKLVTVLDDYALPNYDIMAVYPQQRYLPLKTRLFIDHL 289


>gi|226945188|ref|YP_002800261.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226720115|gb|ACO79286.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 308

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 133/287 (46%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F ++ R GS    A +L+L+  ++S++++ LE  +G++L  R  R ++LT +G   
Sbjct: 6   ELTFFTLLVRLGSLAATARELNLTPPAVSKRLAQLERRLGVRLLNRTTRSISLTGEGELY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  ++E  + ++  S   P G LR+   +  G+  +   +  F+  YPD+++QL
Sbjct: 66  LLNAQRILGEIEEMERQVSSSRAAPKGLLRVNAPLGFGRTYVGPAISSFVKRYPDVEVQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ I++  D  D  IR  + +  S LI R++ +      AAP YL+ C  P + ++L
Sbjct: 126 QLTDRPINLPNDAIDVGIRFGE-LPDSRLIARRIASNRRLLCAAPAYLQACGRPETPKDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN I               L+   +         L  N     + + + G GI +  +
Sbjct: 185 MRHNCIVLRQNDAAFGVWR--LSRGKQSESIKVRGSLSTNEGEVALNWALDGHGILMRAE 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +     +  L  ++E+  TP   +Y  Y E L  + K+  F + +
Sbjct: 243 WDLAKYLRSGRLEEVLEEYETPPADIYAVYLERLNLSAKVSFFVDHL 289


>gi|332715762|ref|YP_004443228.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062447|gb|ADY66137.1| transcriptional regulator LysR family [Agrobacterium sp. H13-3]
          Length = 297

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 10/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR  SFT AA +L +SQS++S  +  LE  +G++L  R  R ++ TE G +
Sbjct: 7   NDLAAFIAVAREQSFTRAAAKLGVSQSALSHTLRQLEARLGVRLLMRTTRAVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       + ++E     L E   KP+G +RI         +L   L++FL  YPDI+++
Sbjct: 67  LLNGIGPHFDEIEAHVDALNELREKPAGTIRIVAAEYAITYVLWPKLRKFLPQYPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LILDN   DI  +  D  +R+ + +    +  R      +    +P Y KN   P   ++
Sbjct: 127 LILDNGLTDIVTERYDAGVRMGEHLAKDMISARIGPDFCLAVVGSPAYFKNRPHPRHPKD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H+ I F   +P     + W      R I       L  N+  + ++  + G G+A +
Sbjct: 187 LVGHDCINF--RLPSAGGLYVWEFEDKGREIKIKVDGQLAFNNSFNSLEAALDGFGLAYI 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P+ ++     +  LVR+++    P    Y  YP   + +    AF   +    R
Sbjct: 245 PEEMILPYVADGRLVRVLQKYSPPWDGYYLYYPSRRQASP---AFVR-VLEALR 294


>gi|229589030|ref|YP_002871149.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360896|emb|CAY47756.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 301

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L +R  R L+LT 
Sbjct: 1   MDRLQAMRVFVTVVDLGSQSAAADHLDLSRPVVSRYLAELEDWVGARLLHRTTRKLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       Q  + E    P G LR++ +   GQ  L   + E++  YP 
Sbjct: 61  AGGETLPRCRQLLELCCDMQAAVSEPDDAPRGLLRLSVSTSFGQAQLAEAIAEYVKRYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L + ++ +++  +  D AIR    +   +LI R+L        A+P YL+    P 
Sbjct: 121 VTVDLQMLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLTVCRSVVCASPAYLRAHPAPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL  HN +T                     +  P    +  N   ++++  + G+G+
Sbjct: 180 KVEELAAHNCLTHSYFGKSLWH----FEEGGEHVSVPINGNITSNEASTLLRVTLAGAGV 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++LP Y   D      LVR++ +       +Y  Y         L++  +F+ L+  +
Sbjct: 236 SMLPTYQAGDYIRRGELVRLLPEAEPRQMNIYAVYASRKHMPSALRSLLDFLVLRFPE 293


>gi|296156335|ref|ZP_06839174.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893841|gb|EFG73620.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 303

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 6/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D    F  +A SGS T AA +L LS +++S+ ++ +E+  G+ L  R  R ++LT +G  
Sbjct: 8   DDFAFFSTLAASGSLTAAARELGLSTAAVSKHLAQMESRAGVSLVNRTTRRMSLTPEGDL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  + + ++     L  S   P G LR+  T+  G++ +   +  F+  +P++ +Q
Sbjct: 68  YLTRARRILNDMDDLAQLLGGSQAAPKGLLRVNATLGFGRSHVAPLISTFVRRFPEVDVQ 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L      +S D  D  +R  +P   + +I R++ +      A+P YL   R P S  E
Sbjct: 128 LQLSVDPPPLSDDAFDVCVRFGEP-PDARVIARRVASNRRLLCASPRYLAQRRAPRSPAE 186

Query: 186 LDKHNLITFGDLIPKC--MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +HN I               +     ++         L  N     +++ + G GI +
Sbjct: 187 LAQHNCIGIRQGGDGYGLWRLTSGRGAAEKTETVRVRGNLTTNDGEIAVKWALDGHGILM 246

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             ++ + +   +  LV +M D  TP   +Y  YP+ L+ T ++KAF + +  
Sbjct: 247 RAEWDIAEYLADGRLVHVMPDYRTPGADIYAVYPQQLQMTARVKAFVDMLIE 298


>gi|259909683|ref|YP_002650039.1| LysR family transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|224965305|emb|CAX56837.1| LysR family transcriptional regulator [Erwinia pyrifoliae Ep1/96]
          Length = 284

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 127/284 (44%), Gaps = 6/284 (2%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           +++  SFT AA +L +SQS++S  I GLE  +  +L  R  R +  TE G +L +    +
Sbjct: 2   ISKEKSFTRAAAKLGVSQSALSHSIRGLEERLKTRLLTRTTRSVAATEAGERLIKSVGPM 61

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              +E   + L E+    SG +RI        + L   LK FL  YPD+ ++L +DN   
Sbjct: 62  IDDIEKALLHLTENVGSISGNIRITAGEHALSSTLWPLLKPFLQAYPDVNVELSVDNTLT 121

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           DI     D  +RL + I+   +  R      M A A+P YL     P +  EL  H  I 
Sbjct: 122 DIVSGRFDAGVRLGESIEKDMVAVRIGPDWRMSAVASPEYLAQYGIPETPYELQNHRCIN 181

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVK-- 250
               +P     ++W  + +    + ++   L  N+  S +   + G GIA +P+  V+  
Sbjct: 182 M--RLPTLGGLYSWEFSKEGKGIKVKVEGQLIFNNLPSRIDAALSGMGIAYVPEDSVQQY 239

Query: 251 -DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++  L  ++E+   P    Y  YP   ++T         + LK
Sbjct: 240 VEDGRLQHLLEEWCEPFNGYYLYYPSRKQHTAAFSKLIEAVRLK 283


>gi|289624194|ref|ZP_06457148.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647243|ref|ZP_06478586.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486161|ref|ZP_07004224.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159168|gb|EFI00226.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330868084|gb|EGH02793.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330985532|gb|EGH83635.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 306

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F+++A+ GS    A +L ++  +IS+++S LE  +G +L  R  R ++LT +G  
Sbjct: 5   QDLSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEARLGTRLVNRTTRSMSLTAEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +  +++  +  +  SS  P G +R+  ++  G+  +   L  F   YP++QIQ
Sbjct: 65  YFSHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +  +D++    D  IR    +  ++   RK+ +      A+P YL+    P  + E
Sbjct: 125 LEISDHPLDLATHGFDLGIRFGS-LPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN I                +   R         L  N     + + + G GI L  
Sbjct: 184 LQHHNCIFLRQNETPYGVWS--FSNGGRTQNVKVHGALGCNDGEVALNWALEGFGILLRA 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ +     +  L  ++ED       VY  YP+ L  + +++   +F+  +
Sbjct: 242 EWDIARYVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRCLIDFLVER 292


>gi|330892117|gb|EGH24778.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 306

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F+++A+ GS    A +L ++  +IS+++S LE  +G +L  R  R ++LT +G  
Sbjct: 5   QDLSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEARLGTRLVNRTTRSMSLTAEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +  +++  +  +  SS  P G +R+  ++  G+  +   L  F   YP++QIQ
Sbjct: 65  YFSHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +  +D++    D  IR    +  ++   RK+ +      A+P YL+    P  + E
Sbjct: 125 LEISDHPLDLATHGFDLGIRFGS-LPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN I                +   R         L  N     + + + G GI L  
Sbjct: 184 LQHHNCIFLRQNETPYGVWS--FSNGGRTQNVKVHGALGCNDGEVALNWALEGFGILLRA 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ +     +  L  ++ED       VY  YP+ L  + +++   +F+  +
Sbjct: 242 EWDIARSVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRCLIDFLVER 292


>gi|330502823|ref|YP_004379692.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328917109|gb|AEB57940.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 304

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 119/287 (41%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F +VA +GSF  AA    ++   + R++  LE  +G+KL +R  RGL LT+ G +  
Sbjct: 7   IRSFVLVADNGSFAAAALSEGVTPVVMGRRLDALERHLGVKLMHRSTRGLQLTDLGEQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +     +        G L ++     G+  +  +   FL  YPD+++   
Sbjct: 67  DRARALLKDFDEADASVARGGRSVRGHLVVSAPAAFGRRHIAPHAPAFLKRYPDLKLSFN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+     D  IR+ + +   + +  KL         AP Y +    P ++++L 
Sbjct: 127 FTDSLVDLVRQGYDMGIRIGE-VTDPNYVAVKLFPNRRVVCGAPSYFELHGVPRTLEDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +HN + F     +  +   W    D R +       L  N    +  +   G GI     
Sbjct: 186 RHNCLAFNL---QGGQQRGWTFLRDGRQVAVKVAGNLDCNDGELLYDWVKQGLGIGWRST 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + ++       LV +++D   P++ +   YP+      K++ F +++
Sbjct: 243 WEIQAELKAGELVTVLDDYEIPAYDIQAVYPQQRYLPAKVRFFIDYL 289


>gi|78066378|ref|YP_369147.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967123|gb|ABB08503.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 299

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 124/296 (41%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L VF   A + SF  A   L +S S I + ++ LE  +G++LF+R  R + LT +
Sbjct: 1   MDSFALNVFVQAADTRSFVAAGRVLGISASGIGKSVTRLEQSLGVRLFHRSTRSVALTTE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+        +  + +  Q EL E+S  P G+LRI     +  +        F   YP+I
Sbjct: 61  GALFLERARRILAEFDAAQAELSEASSVPRGRLRIGLP--MVGDPFLPVFSAFRQRYPEI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  DN+  DI  +  D  +R    +  S L  R L    M    AP Y      P  
Sbjct: 119 ELDLDFDNRMADIIEEGYDAVVRSGD-VDDSRLTARPLGRFRMMLVGAPDYFARRGTPSH 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL +H+ I F       ++ +               + +  N+  + M + + G GIA
Sbjct: 178 PRELVEHDCIQFRMPNTGKLQTWQLRCDAGDEPELRLPTAITCNTNEARMYFAITGVGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              ++  K   +   LV +++D      T    +P     T +L+AF +F+    +
Sbjct: 238 YASEFSAKQALEAGQLVTVLDDYTAEQNTFQLLWPSGRHVTPRLRAFIDFVSEHVQ 293


>gi|33595145|ref|NP_882788.1| LysR family regulatory protein [Bordetella parapertussis 12822]
 gi|33565222|emb|CAE36020.1| LysR family regulatory protein [Bordetella parapertussis]
          Length = 340

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 145/295 (49%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++VF  V  + SFT AA+ L L +++++  I GLE  +G++L  R  R ++LT 
Sbjct: 1   MDRFQAMQVFVRVVEANSFTRAADALVLPRTTVTTVIQGLERHLGVRLLNRTTRRISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++  + +  ++E T+   Q+++ +P G+LR+     +G+ +L   L EF   YPD
Sbjct: 61  DGAAYYKHATRILAEVEETEACFQDAAARPQGRLRVDVPPCIGRLVLIPALCEFHTRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + + ++ +D+  +  DC IR  + ++ SSL+ R++ T      AAP YL     P 
Sbjct: 121 IELVIGMGDRRVDLVQEAVDCVIRSGE-LEDSSLVARRIGTFQTLTCAAPSYLARKGMPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++Q L +H  + +     +     +W   VD       +   + VN   + +   + G G
Sbjct: 180 TLQALAEHQAVHYFSATGRNC---SWDFVVDGKETLVDVPGVVSVNDLSAHLTCGLQGFG 236

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     YI      + +L+ ++         +   Y ++ + + K++ F +++  
Sbjct: 237 LIQTARYIALPHLQSGDLIEVLPQWKPKPVPMSLLYLQSRQLSPKVRVFSDWVAE 291


>gi|119385959|ref|YP_917014.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119376554|gb|ABL71318.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 297

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  SFT AA +L +SQS++S+ I  LE  +GI+L  R  R ++ TE G
Sbjct: 5   NFNALATFATVARERSFTKAAAKLGISQSALSQSIRNLEERLGIRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S  + ++ET   +L     KP+G +RI T      ++LQ  L  FL  YPDI+
Sbjct: 65  ERLLTTISPKFDEIETALADLSAMRDKPAGTIRITTGEHPAVSILQPALATFLPEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI+D    DI     D  +RL + +    +  R    + M   A+P Y ++   P + 
Sbjct: 125 VELIVDYGLTDIVAQGYDAGVRLGEQLAKDMVAVRIGPEMRMAVVASPTYFEHRPIPQTA 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  HN I     +P     F W    D    + R    L +N+    +   + G GIA
Sbjct: 185 EDLIAHNCI--SSRLPTYGGIFQWGLEKDGHEVKVRSEGQLVLNTLGLRVACALDGLGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+           L+R++ED        +  YP     +       + +
Sbjct: 243 YLPEDQALPYIAEGRLIRVLEDWCPRFPGYHLYYPSRKHPSPAFALLLDRL 293


>gi|317048408|ref|YP_004116056.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950025|gb|ADU69500.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 297

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 134/291 (46%), Gaps = 8/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF   A  GSF   A+ L +S   +++ I+ LET +G  L  R  R L LT+
Sbjct: 1   MDKLAGMKVFVKAAELGSFAAVADMLEMSPQMVAKHIAALETRLGAALINRTTRRLHLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     V  ++E     +      P+G +R+   +  G   L   +  +L  +P 
Sbjct: 61  IGRRYYERCRVVLAEVEEADAVVLNMQATPAGIIRVNAPVTFGSYTLAPFITRYLAAWPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L L ++ I+ + + A+  IR+ + +  S+++   L    + A AAP Y+     P 
Sbjct: 121 VQVELTLSDRIINAAEEEAEVLIRIGE-LADSAMVAWPLARYRLIACAAPSYIALHGMPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  EL  H  + +G           W+      I E R    L+ N + ++M   + G G
Sbjct: 180 TPAELQHHACLVYG--YWSSAMPCRWIFHKAGKIEEVRPEGRLRSNDWKALMHAALEGYG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + L P+ ++K+      LVR++ D   PS  ++   P A K T K++ F +
Sbjct: 238 VTLGPEDVLKEEINKGRLVRVLPDYSGPSRPMHVLVPSARKQTTKIRCFVD 288


>gi|332524256|ref|ZP_08400480.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332107589|gb|EGJ08813.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 304

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++  F  VA  GS T AA+   ++ + + R+I  LE  +G+KL  R  R +TLT +GS
Sbjct: 4   LKQIESFVAVATKGSLTAAAQAEGVAPAVVGRRIDALEERLGVKLMLRTTRRITLTHEGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V   L   +  +    VK SG LRI      G+  +   +  F+  +PD+ +
Sbjct: 64  AFLEDCQKVLADLGNAEASVSAGGVKASGHLRITAPAGFGRRHVAPLVPSFMAEHPDVSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +DI  +  DCAIR+   +  SSL+  +L        A+P YL+    P +  
Sbjct: 124 SLNLSDRVVDIVNEGFDCAIRVGD-LADSSLVSVRLADNRRLCVASPRYLQRAGVPRTPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  +T         +   W   VD  +   R    L  +    +  +C  G GIA 
Sbjct: 183 DLARHECLTLSS---DASQTRGWAFLVDGQVQHLRPTGRLDCSDGQVLHAWCRAGLGIAW 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V+ +     LV ++E+   P   +Y  +P+      +++ + +F+
Sbjct: 240 RSTWEVQQDIASGQLVAVLEEFSAPPNGIYAVFPQRRLLPLRVRLWIDFV 289


>gi|319763777|ref|YP_004127714.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330823959|ref|YP_004387262.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317118338|gb|ADV00827.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329309331|gb|AEB83746.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 304

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 136/290 (46%), Gaps = 8/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F ++AR GS + AA +  +S ++ S++++ +E+ +G++L  R  R L LT +G   
Sbjct: 10  EMAFFSLLARLGSLSGAAREQGVSTAAASKRLAQMESRLGVRLVSRTTRRLHLTAEGETY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +  +++  +  + +    P G LR+  T+  G++ +   +  F+  YP IQ+QL
Sbjct: 70  LRHARRILAEIDAMEQLVADMQSTPQGLLRVNATLGFGRSHIAPLVPAFVRRYPQIQLQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +   ++ D  D  IR  +P   + +I R+L        AAP YL     P    +L
Sbjct: 130 QLSVQPPPLADDGFDVCIRFGEP-PDARVIARRLAPNRRLLCAAPAYLARRGTPARPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ I   D+         W     R     R+   L  N     + + + G G+ +  
Sbjct: 189 QQHDCI---DIRQGDDAHGVWRFAGARKHESVRLRNHLATNDGEIAVNWALAGLGLVMRA 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++ V     +  LV++++D  TP   ++  YP+    T +++AF +F+  
Sbjct: 246 EWDVARYLRSGRLVQVLQDWQTPPADIHAVYPQRHAATTRVRAFVDFVAE 295


>gi|320158517|ref|YP_004190895.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
 gi|319933829|gb|ADV88692.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
          Length = 305

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 138/299 (46%), Gaps = 12/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF  V  SGSF+ A   L+++ SS++R I  LE  +   LF R  R L LTE+G 
Sbjct: 2   LELLKVFDQVVESGSFSQAGRALNMAPSSVARNIDSLENRIKTTLFKRSTRQLILTEEGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++ +S++    +    E++ +   P G LRI+     G   L   + EFL  YP IQI
Sbjct: 62  YFYQQSSKILRDSDNLLAEMRGNHGVPEGILRISVFESFGNLYLTPLIPEFLERYPKIQI 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L LDNK +D++ D  D AIR+  P Q S L  R L+T +    A+P Y+         +
Sbjct: 122 ELELDNKLVDLNSDNVDMAIRIGTP-QDSRLKARHLLTNYTALVASPAYINTHSPITKPE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN +       +    F   +T  + +       L       ++   + G+G+ LL
Sbjct: 181 DLQQHNCLLISHERQRNYWYFRQKSTTRKVM---VAGNLISKGGSPLLCAALQGTGVLLL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +++K   ++  LV ++           S  ++  Y         L+ F +F+  K +
Sbjct: 238 SKWMLKPYLESGQLVELLPSWTATHGELGSGEIFAIYKNTQYPKPHLRVFLDFLLEKLK 296


>gi|194364693|ref|YP_002027303.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347497|gb|ACF50620.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 314

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 130/285 (45%), Gaps = 6/285 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A +GS   AA  L LS S++ ++I+ LE E+G +LF R  R + LT++G  L 
Sbjct: 10  LLAFVRTAEAGSIVGAARVLGLSASAVGKRIARLEQELGTRLFQRTTRRVHLTDEGELLL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +       +L   Q +L +    PSG LRI     +G   L   L  F   YP +Q++L 
Sbjct: 70  QRCRRALDELSEAQADLAQRQHAPSGLLRIGLP-TIGYRFLLPVLPGFQQRYPQVQLELD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  D  IR  + +  SSL  R+L        AAP YL+    P  + EL 
Sbjct: 129 FNDRIVDVVSEGLDAVIRSGE-LADSSLTARRLGGFRFILSAAPGYLQAHGTPGDVSELR 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F       +  +  L  ++   G    + +  N+  +++   +   G+A +PD+
Sbjct: 188 LHTALRFRYPTTGKLHPWQ-LPGIEGDAGARLPTAMTCNNMEAVLAAAIGCMGLAWMPDF 246

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  D   +  L R++  + T        +P     + +L+ F ++
Sbjct: 247 LAADALADGRLQRVLPALPTHQGQFSLLWPGGRHPSARLRVFIDY 291


>gi|163858834|ref|YP_001633132.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262562|emb|CAP44865.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 293

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 139/297 (46%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D LRVF  V  +GS + AAE L  + S +SR +S LET++G+ L  R  R + LT
Sbjct: 1   MALSSDALRVFLAVVDTGSMSAAAEFLGQTASGVSRSLSRLETQLGVTLLTRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   L+  +  ++    +P+GKLR+  +  +  + +   + EF   YP
Sbjct: 61  EEGQLFLQRARGIVGDLDDAEECMRIRRQQPAGKLRVDASAPVMLHCVVPYIAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L  +++ +D+     D A+R   P+  SSL  R L        A+P Y+     P
Sbjct: 121 EISLELTSNDRIVDLVEHRTDIALRAG-PLSDSSLHARPLRPSRRLVVASPAYVARRGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++ L +H L+ F       +         +  I    +  L  +S  +  Q  + G G
Sbjct: 180 ATVEALRQHELLGFTQPETLNVWPLRHAGGAEFTI----VPTLAASSGETQRQLAINGVG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA L ++++K +     LV+++E+  T     ++  Y    +   ++  F +F   +
Sbjct: 236 IACLSEFMLKADLAEGRLVKLLENACTDYVQPMHAVYYRNTQLARRIACFLDFFAER 292


>gi|90578972|ref|ZP_01234782.1| hypothetical transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
 gi|90439805|gb|EAS64986.1| hypothetical transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
          Length = 304

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 122/292 (41%), Gaps = 9/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++ VF  + +  SFT AA+ L +S++ +S+ +  LE  +G++L  R  R   LTE G  
Sbjct: 6   QQMVVFNALTKQKSFTKAAQLLEISRTQVSKLVQQLEERLGVQLVQRTTRSFALTESGRI 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    V  ++   + EL        G LR+        N +   + EF    P + ++
Sbjct: 66  FAKHCEAVVDEINEAESELLIFGDSQQGSLRVGIAQSFASNHVAPYINEFHEQNPLVNLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+  +  D  I           + R L        A+P YL     P    +
Sbjct: 126 LSLFDHRVDLISEQLDLWIGFMDS-PPEGFVARHLTNCDFVLVASPDYLAKHGVPYHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN IT+     +  +D  W  ++       +++   +V+S  +I    + G+G+  L
Sbjct: 185 LQHHNCITY---FSRERKDNIWNFSLGNEEQHVKVTGNYRVDSADAIRDATISGNGVGYL 241

Query: 245 PDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             Y++KD      L+R+M D  +T    +Y  YP       K+  F  FI  
Sbjct: 242 ATYLLKDEIRQGKLIRLMPDWQLTQHMPLYAVYPRHKYLPSKVNLFIEFIRE 293


>gi|330980813|gb|EGH78916.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 303

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 132/300 (44%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+FD + + +F  V RSGSF+ AA QL +  ++ISR++  LE ++  +L  R  R L LT
Sbjct: 1   MAFDLNDVALFVQVVRSGSFSQAARQLGMPSNTISRRVQQLEMQLDTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G + +               +L     +PSG +RIA   D         +  FL  YP
Sbjct: 61  QAGEEFYDRCVGAVDGGMEAAEQLASGRDEPSGLVRIAAMADFFDFFSMDWVAGFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCRE 179
            +Q++ +L +   D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDEGHDTMVASPAYIAAHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+Q L  H  +    +    +  +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLQSLHSHYCV--SAVHRGGVTAWRLLGPDTKMHEVHIASRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K RD
Sbjct: 238 GIALLPATLIRSDLRDGRLVPVLPRYQRISHGLHVLYPSRQHLPPAVSAFIALVLDKLRD 297


>gi|260773207|ref|ZP_05882123.1| transcriptional regulator LysR family [Vibrio metschnikovii CIP
           69.14]
 gi|260612346|gb|EEX37549.1| transcriptional regulator LysR family [Vibrio metschnikovii CIP
           69.14]
          Length = 317

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 7/292 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +   FT AA+QL +S S +S+Q++ LE  +GIKL  R  R +T+TE G   
Sbjct: 8   QMVIFATLVQQKGFTAAAKQLGVSVSHVSKQLALLEASLGIKLVQRTTRSVTITEAGQGF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +E+   ++  Q E++    + +G LR+  +   G   +   L+     YP++Q+++
Sbjct: 68  YWHCAELLRLVDEAQAEVESQRDEVAGLLRLGLSQSFGTLHVLPALESLRQRYPELQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + I     I ++L        A+P YL +   P + + L
Sbjct: 128 HLFDHRVDMLQEGLDLWITSNEHIP-QGYIAQRLADSRFVVVASPDYLLHHGTPHTPEAL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +              A  D  +         V+   ++    V G G+A L  
Sbjct: 187 SEHNCLIYRSWDRDYTRWS--FAKSDHKLTIQVSGNYSVDLAEAVRDAAVAGWGVAYLAT 244

Query: 247 YIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           Y++KD   +  L++++ D     +   Y  YP       K  A  +FI  K 
Sbjct: 245 YLLKDEFRHGQLIQLLPDWHANQNMPFYAVYPSRQHMPKKTSAVIDFIKDKL 296


>gi|315126504|ref|YP_004068507.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315015018|gb|ADT68356.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 317

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             W+ +  F  V   GSFT AA+ L LS + ISR ++ LE  +  +L  R  R + LT++
Sbjct: 29  MRWEGIDEFIAVGEEGSFTQAAQTLGLSVAHISRHVTKLEQRLNTQLLTRTTRKVVLTKE 88

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       + H ++     L      P GK+++   +  G++ +   +  F+  +P++
Sbjct: 89  GEQFLHQVKHLQHAMDEATQGLASVQTSPKGKIKLTAPVMYGESFIMPIVHSFMHDHPEV 148

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++   L N+  ++     D AIRL   ++ SSL  R+L +      A+P YL    EP +
Sbjct: 149 EVIATLSNEQENLLEGGFDLAIRLGH-LKDSSLKARRLSSRRFIMCASPAYLARFGEPHT 207

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL+ H  +       +  E+       +R         L  NS  +++   + G GI 
Sbjct: 208 LGELNNHQCLIGNSSYWRVNEN-------NRDKHIKVAGRLHCNSGWALVDGAIKGLGIV 260

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LPDY +++   +  LV I+         V+  YP        ++   +++ 
Sbjct: 261 QLPDYYIENEIKSGQLVPILTAYQPQQEGVWGLYPPRQFVATNVRVLLDYLV 312


>gi|119773541|ref|YP_926281.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119766041|gb|ABL98611.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 313

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 137/293 (46%), Gaps = 7/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA  L ++++++SR+++ LE   G++L +R  R L LTE 
Sbjct: 1   MDLNRVQIFAAVVEHGSFTAAATALGITKATVSRKVAELEENAGVQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   S V  +L+  + +L  S     GKL+I   I+LGQ  L   L  FL  YPDI
Sbjct: 61  GSNYYHRVSRVLSELQQAETQLSASQQNIRGKLKIVCPIELGQLFLGSILARFLKQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI   L N+ +D+  +  D   ++ +P +   L    +V       A+P YL     P +
Sbjct: 121 QINTELTNRRVDVIEEDIDMLFQIAEP-KDPRLTCHAMVKADKMLLASPEYLAQFGTPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  I         +  +         + EP ++ L VN+     +  + G GIA
Sbjct: 180 PADLAHHRAIRLVSAHIDGV--WKIFDGKQWQVYEP-VAQLTVNNVTLAREAAIEGLGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +P  I  +   +  LV ++ED       +   YP++     + + F  FI+ 
Sbjct: 237 TVPTLIASEALASGKLVPVLEDYPMHQAKITLSYPQSAYLPRRYRVFIAFIYQ 289


>gi|167836173|ref|ZP_02463056.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 299

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 133/297 (44%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S V PSG LR+     +G+ ++   L  FL  YP 
Sbjct: 61  DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPGFLDRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVDLGVTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H  + +       +  + W    D          + VNS  + +  C+ G G+
Sbjct: 180 TPADLERHQPVNYASPSNGRIAPWEWTEG-DAVRRVALRGRVTVNSAEAYIACCLSGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V  +     LV ++ +       +   YP     + + + F  ++    R
Sbjct: 239 IQIPAYDVAAHLRAGELVEVLPNHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLR 295


>gi|120611241|ref|YP_970919.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120589705|gb|ABM33145.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 303

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 127/302 (42%), Gaps = 13/302 (4%)

Query: 1   MSFDWDKLRV-----FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   ++ L++     F   A   SFT AA  + L+ +++SR IS LE  +G++L  R  R
Sbjct: 1   MQRHFEDLKLGGIELFCTTAEQQSFTAAARAMGLTPAAVSRSISRLEARLGVQLLVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LTE G        +   +L   + E+      P+G +RI+     G   +   L  F
Sbjct: 61  QVRLTEAGQAYFERCRQAITQLIDAEREVTGQQQAPTGLVRISLPTPYGHYRVLPLLPAF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP I + + L N++ID + +  D A+R  + +  S L+ RKL    +   A P YL 
Sbjct: 121 RTRYPGITLDVQLTNRNIDFAAEGFDLAVR-GRTLPDSGLVARKLEDAELVVVATPAYLS 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQ 233
               P +++ L +H+ I F  L+P   +   WL        E   R         L  + 
Sbjct: 180 RHGRPTTLESLQEHDCIQF--LLPSTGQPTPWLFRQKGVDVEHLTRGGICCAEDILGTVT 237

Query: 234 YCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     +IV+++     LV ++ +    S      YP       +++    F+
Sbjct: 238 LARNGAGLLQTYRFIVEEDLARRTLVPVLSEWDGASRPFSLLYPAQRHMPLRVRVTIEFL 297

Query: 291 FL 292
             
Sbjct: 298 LA 299


>gi|188990884|ref|YP_001902894.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732644|emb|CAP50838.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 306

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 128/294 (43%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V   GS T AA  L LS +  S+++  LE ++G++L +R  R +  T 
Sbjct: 1   MDRLGDIALFLRVLDLGSITAAAHSLDLSVAVASQRLKRLERDLGVRLLHRTTRRMHPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L+    +L+ES+    G LR+  +   GQ  +   L EF   +P 
Sbjct: 61  EGQQLAARGRVLVDDLDALTDDLRESAQDVGGTLRVTLSASFGQQYISPLLPEFQARHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I   L +  +D+     D AIR+  P++ S L+ R++        A+P YL+    P 
Sbjct: 121 LRISAHLSDDLVDLVKQGFDLAIRIG-PLEDSGLVARRIAPNRRTLSASPAYLQRHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +EL +H  +       +  + +         +     S  + N    +    + G GI
Sbjct: 180 TPEELAQHAGVLLMGRDGR-QDVWTLQTPEGGQVRVRMQSRFESNFGELMRDAVIAGQGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+   + + ++     LV +M D   P+  +    P       +++AF +F+  
Sbjct: 239 AVHSYWHIAEDLRAGRLVEVMPDYPPPTSQISAVMPARQLQPPRVRAFVDFLLE 292


>gi|157368915|ref|YP_001476904.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320679|gb|ABV39776.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 303

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 137/296 (46%), Gaps = 11/296 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M F     + +F +VA  GS+T AA++  L +SS+S++IS LE  +G++L  R  R L L
Sbjct: 1   MRFKQLQDMALFALVAECGSYTAAAKRAALPKSSVSQRISQLEQTLGLRLLNRTTRQLNL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G +      E+    E   + LQ     PSG+LRI+T   LG  LL     +F   Y
Sbjct: 61  TFAGERYLEHCQEMLSAAERADLALQRLRDNPSGRLRISTPAGLGATLLARLAADFQRQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ +++ + +  +D+  +  D A+R  KP Q SSLI R+L     +  A+P YL    +
Sbjct: 121 PDVSLEVSVSDAMVDMVQEGFDAALRTGKP-QDSSLIGRRLGHAPRYLLASPAYLAQSPQ 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  Q+L +H  I         +   +       P+          ++ L   +  + G+
Sbjct: 180 IVDPQQLQQHRCIAHSSWPVWSLRRGDEYFRWQLPMRHV------TDNLLYARECAIAGA 233

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI +LP ++ ++      LV ++ +       +Y  YP    N+  L  F + +  
Sbjct: 234 GITMLPAFLSREVVAQKQLVEVLPEWQAEGNELYLVYPSRKLNSPALACFIDVVLQ 289


>gi|260599340|ref|YP_003211911.1| hypothetical protein CTU_35480 [Cronobacter turicensis z3032]
 gi|260218517|emb|CBA33711.1| hypothetical protein CTU_35480 [Cronobacter turicensis z3032]
          Length = 302

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF   A  GSF  AAE L +S   +++ ++ LE  +G  L  R  R   L++
Sbjct: 2   MDRLTSMTVFVKAAELGSFAAAAEALGMSPQMVAKHVAWLEARLGATLLNRTTRRQNLSD 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  + E      QE    PSG LR+   +  G   L   +  +L  YP+
Sbjct: 62  IGRSYLERCKVVLDEAEAADRVAQEMKGTPSGTLRVNAPVTFGATALAPFITRYLRQYPE 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             I+L L +  +D      +  IR+ + +  SS+I + L    + A A+P YL     P 
Sbjct: 122 THIELTLSDAIVDPLEAGYEVIIRIGE-LNDSSMIAKPLRPYKLIACASPVYLAREGIPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L++H  + +G  I        W    D    E R+    + N + +++   V G G
Sbjct: 181 TPSDLERHACLVYG--IWSSTHPCRWRFEKDGKTEEARVQGRFRANDWKALLHAAVEGYG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + L P  +++   +   LV+I+ D   PS  ++   P   + T K+++F   +
Sbjct: 239 VTLGPADVLRAEMEAGRLVQILPDYTGPSRPMHVLVPPGRRQTVKIRSFIEAL 291


>gi|319781947|ref|YP_004141423.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167835|gb|ADV11373.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 304

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D      F     +GSFT A E+LH+++S+I + I+ LE  +G++L  R  R L+ T +G
Sbjct: 5   DLQGTVAFVQAVEAGSFTSAGERLHVTKSAIGKSIAQLEQRLGVRLLNRTTRSLSPTSEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +        ++E  Q  L      PSG+LR+   +  G+  +   L E    +PD+ 
Sbjct: 65  ISYYEACVRALAEIEAAQSLLASRRQVPSGRLRVDVPLAFGRRCVAPVLFEISRKFPDLT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  +++ +D+  +  D AIR+ +   S SL  R+L        AAP YL     P S+
Sbjct: 125 VEISFNDRRVDLIEEGIDLAIRMGELDDSLSLAARRLYAQRSAICAAPDYLDRHGRPQSV 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H++I +G      +  +    +          + L +     ++   + G GIA 
Sbjct: 185 EDLADHSVIGYGRE--GIVRPWVIRHSDGHLATFVPKARLVLGHGEPMLDAALAGCGIAF 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP ++  D   + +L  ++ D +  +  V+  +P     T K++   + +  
Sbjct: 243 LPTWLAADSLKSGDLEMVLSDCLVENIVVHAVWPVTRALTPKVRVVVDALVE 294


>gi|300715206|ref|YP_003740009.1| transcriptional activator, LysR-family [Erwinia billingiae Eb661]
 gi|299061042|emb|CAX58149.1| transcriptional activator, LysR-family [Erwinia billingiae Eb661]
          Length = 297

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 134/292 (45%), Gaps = 18/292 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA++  L +SS+S++IS LE  +G++L  R  R L LT  G 
Sbjct: 5   LQDMALFALVAECGSFTGAAKKAGLPKSSVSQRISQLEQALGLRLINRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + ++     PSG+LRI +   +G  LL      F   YPD+ +
Sbjct: 65  RYLVHCQEMMQASERANVAIERLRDNPSGRLRITSPAGIGATLLARLNAAFQQEYPDVTL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++  DI ++  D A+R  +P Q SSLI R++        A+  YL+        Q
Sbjct: 125 EVSVSDEVRDIVLEGYDVALRTGQP-QDSSLIGRRIGYCERLLVASKGYLEQYEAITHPQ 183

Query: 185 ELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +L +H  I        L+ +  E + WL                 ++ +   +  +  +G
Sbjct: 184 QLAEHRCIAHRAWSEWLLNRGEEYYRWLL----------PPTHMTDNLVYARECALGDAG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I LLP ++ ++      LV+++ D       ++  YP    N+  +  F ++
Sbjct: 234 ITLLPRFLTQEILPGGGLVQVLPDWQVEGNELWLVYPSRKLNSPAVARFIDY 285


>gi|146307231|ref|YP_001187696.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575432|gb|ABP84964.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 311

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 5/294 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D  D L  F  VA    F+ AA +L +S S++S+ I  LE  +G+ LF R  R + L
Sbjct: 1   MRQDHLDGLLTFIAVAEEKGFSAAAVRLGVSPSAVSQSIRNLEQRLGLVLFNRTTRSVCL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +           L++   EL   +  PSG LRI         +LQ  L+ F+  Y
Sbjct: 61  TEIGERYLERVQPALELLKSASQELGREADHPSGLLRINVPRAAYLIILQPVLRRFMAAY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I +++ ++N  +DI     D  IR    ++   +      T+     A+P YL     
Sbjct: 121 PEINLEIRVENLLVDIVSQGFDAGIRFGDAVEKDMVAIAVGPTLQAQVIASPTYLVQHGV 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   Q+L  HN I +       +E +N+    ++    PR   L +N    +++  + G 
Sbjct: 181 PTHPQQLTMHNCIGYRHTTSGQIERWNFSRGDEKYDLTPR-GRLILNDSEILVRAALEGL 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A + +  ++       LVR++ D       ++  YP+  +   KL+A  +F+
Sbjct: 240 GVAYMINGYIEALVAQGRLVRLLADWSPTLPALHLYYPDRRRVPAKLRALIDFL 293


>gi|312963010|ref|ZP_07777496.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311282779|gb|EFQ61374.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 298

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 140/301 (46%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L++F  V   GS + AAEQ+  + S++SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQIFVSVIECGSISAAAEQVGQTPSAVSRTLSRLEAKLDTTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  +++  +  L      P+G+LRI   +    + +   + EF  LYP
Sbjct: 61  EEGKYFFEQAKLILAQMDELEERLSSRQKNPAGRLRINAAVPFMLHGIVPYIAEFRSLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ++L  D+  ID+     D AIR+   +  S+L  R L    +H  A+P YLK    P
Sbjct: 121 DIQLELNSDDLIIDLLEQSTDIAIRIGA-LADSTLHARSLGCTPLHILASPDYLKQYGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L KH L+ F             +   DR + EP I+    +S  ++ Q  + G G
Sbjct: 180 QTVADLAKHTLLGFTQTETLNHWPLRHVEG-DRWLIEPGIAA---SSGETLRQLALQGQG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L +++     D   LV ++E   +     ++  +    +   +++ F +FI  K   
Sbjct: 236 ICCLSNFMTSADIDAGRLVPVLETFNSGYRQPIHAVFYRNSQLALRIQCFLDFIQAKLAR 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|329118191|ref|ZP_08246901.1| LysR family transcriptional regulator [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465612|gb|EGF11887.1| LysR family transcriptional regulator [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 299

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 138/289 (47%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  V R GSFT AA++L +S +  S+ +S LE +V  KL  R++R L LTE G + H
Sbjct: 7   LRVFREVVRQGSFTRAADKLGISTAMASKHVSHLEKQVCAKLLQRNSRSLHLTEAGEQYH 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  ++    L+T        +  P G+LRI   +     +  G L E+   +P + + LI
Sbjct: 67  RCCAQALETLDTAAERAAGGADTPQGRLRITMPMWFANPVFSGWLAEYRRRHPQVALDLI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+  D+  +  D A+R+       SLI R L  I  +  AAP YL     P + Q+  
Sbjct: 127 LDNRKADLIAEGIDLALRVSTDDLPPSLIVRPLSDIRFYLAAAPDYLAAHGTPATPQQAA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           + + +    +    +       +       P    ++ ++ L + Q  + G GI  LP++
Sbjct: 187 RLDFVLPSYVDMDSVRITRGSDSFTLAPAAP----VRADNTLMVRQMVLAGCGIGYLPEW 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            V+ +     L RI+ D    + T+Y  Y +    + K+++F +F+  K
Sbjct: 243 TVRRDFANGRLARILPDWHILTATLYAAYADRAFLSAKVRSFIDFLCEK 291


>gi|190890502|ref|YP_001977044.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695781|gb|ACE89866.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 294

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 6/287 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA   SF  AA+ L +S  ++SR +S LE  +G +LF R +R L LT+ G +L    
Sbjct: 2   FAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFGLRLVDSA 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +Y + E  +   +E + +P G +R+A  +D G   L   L +F  L+P+I I L + +
Sbjct: 62  ARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEISIDLHMSD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             +DI  D  D A+R+   +  SSLI R+L  +     AAP YL     P   +EL  H+
Sbjct: 122 AVVDIVGDGFDAALRIA-VLPDSSLIARRLTPVDRFILAAPAYLDRYGVPEHPRELAAHH 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + +     + +  +       +         L+  +   ++   + G GI  LP+++  
Sbjct: 181 CLGYAYRARQDV--WRLRNGEGKEEVVVPSGSLRATNSEVLVPMALRGLGIIELPEFLAH 238

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           D   +  L  I+ D   P+  +YF  P A     K++   +F+  + 
Sbjct: 239 DYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLSDFMMARL 285


>gi|169634494|ref|YP_001708230.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169153286|emb|CAP02392.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii]
          Length = 298

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 10/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +  +F  VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+
Sbjct: 1   MDRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPD
Sbjct: 61  DGQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL   +   D+     DC +R+ + + +SSLI R +  + M   A+  YL++   P 
Sbjct: 121 IHLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASTQYLQDYGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L++H LI +   + +   +F +             S L VN+  + +     G GI
Sbjct: 180 QLNDLEQHKLINYAGAVGEKQGEFIYQGGT-----VMMDSALSVNNTEAYIAAACAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y V+D      LV ++   I PS  +   YP       +L+ F N++
Sbjct: 235 IQLPYYDVQDKIEQGILVEVLSAYIAPSLPLNILYPNRSYIPKRLEVFMNWV 286


>gi|117620002|ref|YP_857691.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561409|gb|ABK38357.1| LysR-family transcriptional regulatory protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 299

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 135/295 (45%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LRVF  V   GS + A E+L +S++ ++R ++ LE  +G +L +R  R L+LT 
Sbjct: 1   MDRLTALRVFVSVVEQGSLSGAGEKLEMSRAMVTRYLAELEQWMGARLLHRTTRRLSLTG 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +    E  +         P G+LRI ++  L + LL G   ++L  Y  
Sbjct: 61  PGEEALNRARAMLALGEEMEQIAVRGDEAPKGQLRITSSYSLSEALLVGAANDYLACYAG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             I ++L ++ +++  +  D A+R+   +   +L+ R+L T H    A+P YL     P 
Sbjct: 121 TAIDILLLDRTVNLVEERIDLAVRITNDL-DPNLVARRLGTCHSVVCASPAYLARHPTPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +Q+L  HN +T+        E        D P   P    L  N    +++  + G+GI
Sbjct: 180 KVQDLALHNCLTYTYFGKSLWE----FQGPDGPESVPVSGNLSANISNLLLEATLEGAGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +L P Y V+   D   LV ++E        VY  Y    + +  L++F +F+  +
Sbjct: 236 SLQPRYSVQPHLDTGTLVPLLEQWQPKRLGVYAVYGTRKQMSPLLRSFLDFLVER 290


>gi|316932453|ref|YP_004107435.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315600167|gb|ADU42702.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           DX-1]
          Length = 307

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF  AA +L LS++++S+ ++ LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEALAIFAKVVELRSFAAAATELGLSKATVSKAVTRLENRLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +++    E  + E    S  P G +R+A  +  G  ++   L EFL  YPD+ 
Sbjct: 66  HRLAERAAQLLADGEAAEAEALAQSAAPRGLVRLAVPMTFGVKVIAPLLPEFLTAYPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D  +R+   +  SSL+ R+L  +  +  A+  YL+    P   
Sbjct: 126 IDLHLSDAMVDLIGDGFDAGVRIAS-LPDSSLVARRLCAMPRYTVASKSYLQAHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H  + +  L       ++        +       L+VN+  +++   + G GIA 
Sbjct: 185 MHLAQHRCLGYAYLSTPNTWHYS--NDAGDQVAVRPGGPLRVNNGEALLPAVIAGLGIAD 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP++IV +      +  I+         V+   P       +++   +F+
Sbjct: 243 LPEFIVGEAIAAGEVEVILAGWHQREGAVHLVTPPGGPRPARVEVLSDFL 292


>gi|295681438|ref|YP_003610012.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295441333|gb|ADG20501.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 294

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 136/298 (45%), Gaps = 10/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  VA + SFT    QL LS S++ + I+ +E  +G++LF+R  R +TLT 
Sbjct: 1   MDSFGGISLFVQVADTRSFTETGRQLGLSSSAVGKSIARMEERLGVRLFHRSTRSITLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  ++E  + EL  ++  P G+LRI+T       L+   L  F+  YPD
Sbjct: 61  EGALFLERCRRILGEIEAAEAELSGAAGSPRGRLRISTPQ--LSGLIMPALDGFMAQYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L ++  DI  +  D  IR  +    S L+ R+L +       +  YL+    P 
Sbjct: 119 IELDVDLSDRMADIIEEGFDAVIRTGEQ-HDSRLVSRRLGSCGQVLVGSAAYLERHGTPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
              EL  H  +      P   +   W   +     +P +      N+   +    +   G
Sbjct: 178 HPSELATHACLLHK--FPATGKFERWPFRLGASEAQPELPQTFSANTIEVLAFLALQDKG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A LP +IV+D   +  L  ++ D I  + T +  +P +   + KL+ F ++I    R
Sbjct: 236 LAFLPTFIVRDALSSGALRIVLNDYIEQTVTFWILWPASRYASPKLRVFIDYIGRHLR 293


>gi|224823554|ref|ZP_03696663.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224604009|gb|EEG10183.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 308

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 131/296 (44%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A+  L + +S +SR+++GLE ++G++L  R  R L LTE G
Sbjct: 3   DLNDLLFFAKVVEHGGFNAASRVLGIPKSRLSRRVAGLEEQLGVRLLQRTTRKLALTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +     +  + +  +  +   + +  G +R++    L +  L   L  F+  +P ++
Sbjct: 63  ASFYDHCQAMLAEADAAEESVSRVTAEARGLIRVSCPELLAKTELGPLLPRFMQQHPQVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  D  D AIR+R  I+ S SL+ R+L        A+P  L+    P S
Sbjct: 123 LLLEATNRRVDLIEDGIDVAIRVRSVIEDSASLVARRLGIARQVLVASPALLQQYGTPAS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGI 241
             ++ +   ++     P     F  L  V      +     L  +  + + +    G G+
Sbjct: 183 PADVARLPALSMN--WPDGRGHFALLDAVGHDYSVQIEQPRLITDDLMVLTEAAEAGLGV 240

Query: 242 ALLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LP    +       LVR++ D I P   ++  +P        ++AF +F+  + 
Sbjct: 241 AQLPVQLCHAALAAGRLVRLLPDYIIPGGILHAVFPSRRGLVPAVRAFIDFLAAEL 296


>gi|54308589|ref|YP_129609.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913018|emb|CAG19807.1| hypothetical transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 299

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 128/288 (44%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  + +  SFT AA+ L +S++ +S+QI  LE  +G++L  R  R   LTE G    
Sbjct: 1   MVVFNALTKQQSFTRAAQLLDISRTQVSKQIQQLEERLGVQLVQRTTRSFALTEAGRSFS 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + V  ++   + EL   +    G LR+        N +   + EF  LYP + +++ 
Sbjct: 61  VHCANVVGEINEAESELLSETDSLQGALRVGIAQSFASNHIAPFISEFHDLYPQLDLEMS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D  I           + R L+  +    A+P YL     P    +L 
Sbjct: 121 LFDYRVDLIAEQLDLWIGFMDS-PPEGFVARHLIDCNFLLAASPAYLAKHGVPYHPNDLK 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN IT+     +  +D  W    +    + ++    +V+S  SI    + G+GI  L  
Sbjct: 180 GHNCITY---FSRERKDNVWSFRKEEESHQIKVKGNYRVDSADSIRDATLTGNGIGYLAT 236

Query: 247 YIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y++KD      L+R+M D  +T    +Y  YP       K++ F +FI
Sbjct: 237 YLLKDELQKGQLIRLMPDWDLTQYMPLYAVYPRHKYLPQKVQVFIDFI 284


>gi|120537045|ref|YP_957102.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8]
 gi|120326880|gb|ABM21187.1| transcriptional regulator, LysR family [Marinobacter aquaeolei VT8]
          Length = 307

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 130/292 (44%), Gaps = 12/292 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  V  +GSF+  A +L+++ S IS++I  LE ++G++L +R  RG  LT 
Sbjct: 9   MDKLRAMRMFVRVVDAGSFSRVANELNVTTSMISKEIGRLEEDLGVRLLHRSTRGQQLTS 68

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   E+  +++     +Q     P GKLRI   + LG   L      ++  YPD
Sbjct: 69  IGEGYLKRCRELLVQVDDADAYVQHMQENPRGKLRINAPMALGITDLSQLFSAYMKQYPD 128

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L ++ +D+     D   R    +  S+ + + LV+      A+  YL++     
Sbjct: 129 VELDIQLGDESLDLIEHGFDLGFRASSQMLDSNYVGKPLVSFTYKVCASASYLESHPPIR 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L  HN   +                     G      L+VNS L + Q    G GI
Sbjct: 189 EVEDLAAHNCFVYSYFKSGNFWPL--------AQGITVAGSLKVNSTLFMKQVIEDGLGI 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP ++ +   +   LV ++ +V  P  T+Y  YP  L    KL +   F+
Sbjct: 241 GFLPSFVAREGIEQGKLVEVLPEVGRPDLTLYALYPNRLFTPPKLLSCIEFL 292


>gi|264679961|ref|YP_003279870.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210476|gb|ACY34574.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 291

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 141/296 (47%), Gaps = 12/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L  F   A   SF  A   L +S S++ + ++ LE ++G++LF+R  R + LT+
Sbjct: 1   MDSFSGLESFVRAADLLSFAEAGRALGISASAVGKNVARLEQQLGLRLFHRTTRQVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS  H     +  +L   +  +Q ++  P G+LR++    +G   L   L EF   YP+
Sbjct: 61  EGSLFHERCRRILDELHDARAAMQAAAEAPRGRLRVSLP-TIGYRFLLPVLPEFQARYPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L  ++  +D+     D  IR  + +  S L+ R+L        A+P YL     PL
Sbjct: 120 VELDLDFNDHLVDVVEAGLDVVIRSGE-LADSRLVARRLGPFRFILAASPAYLSKRGVPL 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H+ + +  L    +E++        PI       L  N+  +++   V G G+
Sbjct: 179 TPPDLAGHSSLRYRFLNSGKLEEWMLPGLPAMPI------ALVCNNMEAMLGAAVSGLGL 232

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A +PD++ +D      L +++ + +T S      +P + + + K++AF +F   + 
Sbjct: 233 AYMPDFLARDALARGELQQVLAEQLTHSGQFSALWPSSRQLSPKVRAFVDFASERL 288


>gi|86358297|ref|YP_470189.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282399|gb|ABC91462.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 300

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 3   DLNDIAVFAKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    +  FL  YPDIQ
Sbjct: 63  RAYYDRCSEPLSHLLDAEQALGETQRKPGGLLKISVPVIFGQEVFYEFISAFLKTYPDIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L + N  +D+  +  D  IR    ++ SS+I ++L     +  AAP YLK    P   
Sbjct: 123 VDLFVTNLFLDLVAENIDVGIRFGD-LKDSSMIAQRLGKSVRYLVAAPEYLKGRAIPAKP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L +H  +       +      W     R   + R+S  +    + ++  +   G GI 
Sbjct: 182 EDLTEHRCVLLNGRNGEA----EWHLVSGRKSLDLRVSGPVSSRDFDAVSAFTYRGHGIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLP     +      L+R++ +  +P   V+  YP       +L+ F   +  
Sbjct: 238 LLPSTYCDEQIRRGELIRLLPEWSSPEIFVHAVYPTRRFLPLRLQVFLEALKA 290


>gi|170698271|ref|ZP_02889348.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136852|gb|EDT05103.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 310

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   G+F  A+E + ++   +SR I+ LE ++ I+LF R  R ++LTE+G + +
Sbjct: 12  ISVFAAVVDMGTFAAASEVIGMTPPGVSRAIARLEKKLNIRLFNRTTRSVSLTEEGRRFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE        S+    GKLR+     + + +L   L  F+  +P+++I+LI
Sbjct: 72  EQVMPHLAGLEEAAAAAAGSASTVRGKLRVNLDPVVYRTILGPQLDAFMDAHPELEIELI 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+ MD  D A+R  +P ++S+LI RKL+   +   A+P Y+     P   ++L 
Sbjct: 132 ARDSLGDLVMDGFDIAVRFGEP-RASTLIARKLLDTGIVTVASPSYVARQGRPTKPEDLA 190

Query: 188 --KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              H  I F +  P+  + F W     R  I       L VN   +++  C+ GSGIA +
Sbjct: 191 SRSHRCIEFRN--PETGKPFAWEFHRRRKRIVVDTRGRLTVNDPGALLNACLAGSGIAQM 248

Query: 245 ----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                + ++  +  L+ +  +     F +Y  YP       K +AF +F+  
Sbjct: 249 LLLGAEPLIA-SGQLIDLFPEWADERFPLYAYYPSRHHLPAKTRAFLDFVVE 299


>gi|209549950|ref|YP_002281867.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535706|gb|ACI55641.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 300

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 136/299 (45%), Gaps = 13/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VAR GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 3   DLNDIAVFVTVARYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLLQRTTRKLSLTAQG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S      SE    L   +  L E+  KP G L+I+  +  GQ +    +  FL  YP+I+
Sbjct: 63  SAYFDQCSEPLAHLIDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFVSAFLKTYPEIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N  +D+  +  D  IR  + ++ SS++ ++L     +  AAP Y+K    P   
Sbjct: 123 IDLFVTNLFLDLIAENIDLGIRFGE-LKDSSIVAQRLGKSVRYLVAAPDYMKGRALPSKP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +       +      W     R     ++S  +    + ++  +   G GI 
Sbjct: 182 EDLKDHQCVLLNGRNGEA----EWHLVSGRKSVRQQVSGPVSSRDFEAVSAFTYRGHGIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LLP     D      LVR++ D  +    V+  YP       +L+ F        + WK
Sbjct: 238 LLPSTYCDDEIRRGELVRLLPDWSSEEIFVHAVYPTRRFLPLRLQVF----LEALKAWK 292


>gi|330821241|ref|YP_004350103.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327373236|gb|AEA64591.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 301

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 138/296 (46%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  +  SGS T AAEQL  + S +SR ++ LE ++G+ L  R  R   LT
Sbjct: 1   MKTSTEELQTFVAIIDSGSITAAAEQLGQTVSGVSRALNRLERKLGVTLLRRTTRSSQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L     ++   +E  +  +    VKP+G+LR+        + +  NL  F   YP
Sbjct: 61  DEGELLLTRARDILQSVEEAETAVSLGRVKPAGRLRVDAATPFMLHAIVPNLPAFTARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ++L  + + +D+     D AIR+   +  S+L  R L    +H  A+P YL     P
Sbjct: 121 DIQLELTNNERFVDLIEQRIDIAIRIG-TLPDSTLHARALGACPLHILASPAYLAEHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLG 238
            S+ +L +H L+ F D+               +P GE  +       +S  ++    + G
Sbjct: 180 RSVADLKRHKLLGFSDIETLNRWPLRRRGAGGQPDGEGLVIEPAHTASSGETLRHLALGG 239

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
            GI  L D++   +     LV ++ ++++     +   Y      TG+++ F +F+
Sbjct: 240 LGIVCLSDFMSAADIAAGRLVPLLGELMSDYRQPINAVYYRHAALTGRVQGFLDFL 295


>gi|322616203|gb|EFY13119.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620219|gb|EFY17089.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623054|gb|EFY19896.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628344|gb|EFY25132.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634750|gb|EFY31481.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638684|gb|EFY35379.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641033|gb|EFY37679.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645489|gb|EFY42017.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651625|gb|EFY47997.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654472|gb|EFY50794.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658646|gb|EFY54906.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665089|gb|EFY61277.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667833|gb|EFY63993.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671755|gb|EFY67876.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677199|gb|EFY73263.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680138|gb|EFY76177.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685434|gb|EFY81430.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323196031|gb|EFZ81195.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199949|gb|EFZ85037.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202453|gb|EFZ87494.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205754|gb|EFZ90717.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210269|gb|EFZ95167.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216741|gb|EGA01465.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323223241|gb|EGA07581.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223648|gb|EGA07959.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231943|gb|EGA16050.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234470|gb|EGA18557.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237921|gb|EGA21980.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243478|gb|EGA27497.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249476|gb|EGA33390.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253784|gb|EGA37611.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259092|gb|EGA42739.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261233|gb|EGA44821.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266598|gb|EGA50085.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271323|gb|EGA54749.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 302

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 144/300 (48%), Gaps = 14/300 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +  + + ++  V   GSF  AAE L L + +++R +  LE ++G+KL +R  R +++
Sbjct: 1   MQLNMLEAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSM 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G + ++    +  +L+  +      +  P G+LR+   I L + ++   L +F   Y
Sbjct: 61  TDEGEEFYQRCLSLLSELDDVRRLF-SRTQPPKGRLRLDVPITLARAVIIPALGDFQNRY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI+I L   ++ ID+  +  DC IRL + +  SS + R+L T  M   AAP YL     
Sbjct: 120 PDIEIVLGTSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGT 178

Query: 180 PLSIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVL 237
           P SI EL   H  + F       ++   W  TVD  I   ++ S + V++  + +   + 
Sbjct: 179 PHSIDELMTSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLA 236

Query: 238 GSGI--ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI   L P    +I   +  L  I+ D   P   V   YP+      K++ F +++  
Sbjct: 237 GLGILHGLRPSLAPFIA--SGELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWLCE 294


>gi|320325256|gb|EFW81323.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327761|gb|EFW83769.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 306

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F+++A+ GS    A +L ++  +IS+++S LE  +G +L  R  R ++LT +G  
Sbjct: 5   QDLSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEARLGTRLVNRTTRSMSLTAEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +  +++  +  +  SS  P G +R+  ++  G+  +   L  F   YP++QIQ
Sbjct: 65  YFSHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +  +D+++   D  IR    +  ++   RK+ +      A+P YL+    P  + E
Sbjct: 125 LEISDHPLDLAIHGFDLGIRFGS-LPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN I                +   R         L  N     + + + G GI L  
Sbjct: 184 LQHHNCIFLRQNETPYGVWS--FSNGGRTQNVKVHGALGCNDGEVALNWALEGFGILLRA 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ +     +  L  ++ED       VY  YP+ L  + +++   +F+  +
Sbjct: 242 EWEIARYVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRCLIDFLVER 292


>gi|167588496|ref|ZP_02380884.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 313

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L +F     +GS + AA  L L +S++S++++ LE  +G +L +R +R   LT  
Sbjct: 1   MNLNDLYLFVQAVEAGSMSAAARLLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+   +       + E+ +  +   + +P G +RI +++ + Q+ L   L  F   +P +
Sbjct: 61  GADFFQHARAAVIEAESARDAVLRQAAEPRGVVRITSSVPVAQHFLAPCLPAFAAAHPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+Q+   ++ +D++ +  D A+R    P+  S+L+QR L    +   A+P YL  C EP 
Sbjct: 121 QLQIHASDRLVDLAQEGFDIAVRSHFAPLPDSALVQRPLAVSPIILVASPAYLARCGEPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L +H+ + +  L          + + D     PR   L  +    ++Q  V G GI
Sbjct: 181 EPAGLAQHDGL-YPGLQSTPWRVGRGVDSGDSVEIAPR-PRLHADESTVLLQAAVAGLGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A LPD+I  D      LVR++        T     P        ++A   F+  
Sbjct: 239 ACLPDWIAHDALQTGALVRVLPAWHAGQVTTTLLMPHRRGQLPGVRAAVEFLVQ 292


>gi|77359925|ref|YP_339500.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874836|emb|CAI86057.1| putative transcriptional regulator (LysR family) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 300

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            +L +F +V  + SF  AAE   +S  ++S++IS LE ++G++L YR  R L+LTE GS 
Sbjct: 5   HELTLFSLVVDAQSFNKAAEVAGISTPALSKKISRLEKDLGVQLLYRTTRKLSLTEAGSS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++    +  +L      +       SG +++      G+ LL   + +F   YP++ + 
Sbjct: 65  LYQHAKSIELQLSDALNSVSAYRGAISGSIKMTVPTISGELLLAQVVGQFCEKYPNVNVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N  ID+     D AIR    +  SSLI + ++        AP+Y++   EP ++ +
Sbjct: 125 MRLENDFIDLVDKRIDLAIRTG-VLADSSLIAKPIIKSRWVVCCAPNYIEKFGEPSNLDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN + +        E           +          N+  ++ Q  + G GI  +P
Sbjct: 184 LSRHNCLAYTYQNKGAREWR--FTHQGEEVSIAIKGNFSANTAQALRQNALSGYGIVYVP 241

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              V +      LV I+ +       VY  YP       K+K    +I
Sbjct: 242 RCCVYEYLLTGELVAILSEYQPRELGVYAVYPYTRHQPEKIKLLIEYI 289


>gi|118161335|gb|ABK64019.1| putative LysR transcriptional regulator [Janthinobacterium lividum]
          Length = 326

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 144/295 (48%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++VF  V  +G F+ AA++L +S SS++ Q++ LE   G++L  R  R ++LT 
Sbjct: 21  MDRLEAMKVFCAVVEAGGFSKAAQRLGISTSSVTNQVAALEKHFGVRLLQRTTRSMSLTA 80

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + H    +V   +   +  L +++ +PSG LR+     + +NL+   L  F+  YPD
Sbjct: 81  EGMQCHAQARQVLADMAALEASLLQAAARPSGSLRVDMPSSISRNLVAPALPRFIAAYPD 140

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +D+  +  D  +R+ +P Q SSL+ R L+ +     A+P ++     P 
Sbjct: 141 ISLRLTVSDRLVDMVEEGIDVMLRIGEP-QDSSLVARSLLGMDYLCCASPAFVARHGMPQ 199

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           + QELD+ + + F  L PK      WL               + L  +   S++     G
Sbjct: 200 APQELDQFSCLHF--LYPKSRLVRPWLFQDAVSGVAYAHTPPAALAFDHIESMIAAAQAG 257

Query: 239 SGIAL-LPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI   L   +++   + +LV +++   T    V+  +        K++ F +F+
Sbjct: 258 CGIVQTLSVSVLQPLRDGSLVPVLQPFRTAGPDVWALFHPRQLRAAKVQVFVDFL 312


>gi|327194309|gb|EGE61170.1| transcriptional regulator, LysR family [Rhizobium etli CNPAF512]
          Length = 294

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 122/289 (42%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GSF  AAE   +S + +++ I  +ET +G KL +R  R   LTE G   +
Sbjct: 7   MAMFVRVIDNGSFAAAAEIAQVSPAMVAKHIKTIETRLGAKLIHRTTRRHQLTEVGQLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++   +    E    P G+LR+   +  G  +L   L ++   YPD+ I+L 
Sbjct: 67  ERCKRALSEVALAEASASELQSAPRGRLRVVAPVSFGTQVLVPALIDYQNAYPDVSIELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN   D+  +  +  I +  P+   SL+ R L        AAP YL     P+S + L 
Sbjct: 127 LDNNVHDLIGEGFELGIHIG-PLSDDSLVARPLTPYRRILAAAPDYLARHGRPVSPEALT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +  G    +  + ++ +         P       N   ++    + G+GIAL P+ 
Sbjct: 186 NHLCL--GHSYWRRQDRWHLVGPGGEMRDVPISGKFSTNQGAALRMAALSGAGIALQPEL 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++  +     L +++ +       +   Y    + T  L+   +F+  +
Sbjct: 244 LLAADIAEGRLEQVLPEWSYRPVPMSLVYAPNRRPTAMLRTVIDFLLER 292


>gi|238895494|ref|YP_002920229.1| LysR-family transcriptional regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238547811|dbj|BAH64162.1| LysR-family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 306

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AA+ LH+S++++++ I  LE+ + ++L +R  R L +T 
Sbjct: 1   MDRFDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLESRLRVRLLHRTTRKLGVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAVYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI + + ++++D+  D  DC +R    I   SLI R +  + +  Y AP Y++    P 
Sbjct: 121 IQIDMGVSDREVDLIGDNVDCVLR-GGQITDQSLIARHVGDLQIGVYVAPSYVERLGAPA 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL    H ++ F       ++     +  +R I       L V+   + ++  ++G 
Sbjct: 180 HPRELQNTDHCIVGFLSSRTSKIDPLVLCSENER-IEITGNYVLAVDDGNACLEAGLVGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP+Y+   +     L+ +          +Y  +P       KL+ F ++I  
Sbjct: 239 GVIALPNYMAAAHQAVGALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWIVE 294


>gi|226945847|ref|YP_002800920.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226720774|gb|ACO79945.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
          Length = 297

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 131/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  V R GSFT AA QL +S S++S  I GLE  +G++L  R  R ++ TE G
Sbjct: 5   NFNDLLAFVRVVREGSFTRAAAQLGMSPSALSHAIRGLEARLGVRLLTRTTRHISTTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  +  ++     L E   +P G +RI T      ++L   L E L  YPDIQ
Sbjct: 65  ERLFQGVAPRFEAIDARLAGLAEFRDRPVGTVRITTAEHAANSILWPKLSEVLREYPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D +  DI     D  +RL   +    +  R    + +    +P Y     EP + 
Sbjct: 125 VEVTVDYRLADIVAQRYDAGVRLGDQVAKDMIAVRIGPDLRIAIVGSPAYFATRSEPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  HN I     +P       W    D      R+      NS   I++  + G G+A
Sbjct: 185 MDLAGHNCINL--RLPTHGGLLPWDFGKDGKEIVARVGGQWTFNSSEPILRAALAGHGLA 242

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP+ +  ++     LVR+++D   P    +  YP   +++  L      +  +
Sbjct: 243 FLPEDMALEHIAAQRLVRVLDDWCQPFPGYHLYYPSRRQSSRALAVVIEALRHR 296


>gi|328542435|ref|YP_004302544.1| LysR family transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326412182|gb|ADZ69245.1| LysR family transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 304

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  V  S  F+ AA ++  S++ +S+ I  LE E+G++L  R  R ++LTE G   
Sbjct: 6   RMRCFLQVVESNGFSAAAREMGRSKALVSKYIGELEDELGVRLLNRTTRQISLTEVGEAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++  +++  +++  Q  +Q +  +  G+LR++    +G  LL   + EFL+  P+I + L
Sbjct: 66  YKEAADILQRIDDLQASVQSTHREARGRLRVSAPRSMGDGLLNRAVMEFLVAEPEITLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +D+  +  D AIR+   ++ SSLI RK+        A P  +     P    +L
Sbjct: 126 RLDDRFVDLVEEGFDVAIRVTD-LEDSSLIARKIAPFRTVIVATPEVIAAHGVPQVPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +   I   +   K     NW   VD   I  P    ++VNS  +     +   G    P
Sbjct: 185 AQRPCIVDTNYRFKA----NWAFMVDGERISVPVKGRVEVNSASAARDAALCNLGFLRTP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              V  +     LV ++E        +Y  YP     +GK+++F +F+
Sbjct: 241 LMFVNADIEAGRLVAMLEAYELDGPAIYAVYPHRRHLSGKVRSFVDFL 288


>gi|325275279|ref|ZP_08141235.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099587|gb|EGB97477.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 302

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 135/294 (45%), Gaps = 5/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F  V+   SFT AAE L L +S++S Q+  LE  +G +LF R  R +  T+ G+
Sbjct: 4   LELLRTFVRVSEVNSFTLAAESLGLPRSTVSEQVRALERLLGTQLFNRTTRRVQATQDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+  + ++   ++  +        + +G+LR+     + + ++   L  FL  +P +Q+
Sbjct: 64  LLYTRSKDLLSGMDEIESLFSADDAELAGRLRVDLPTMMARRVIIPALPRFLQRFPRLQV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +D+  +  DC +R+   +    ++ R +  + M   A+P YL     P ++Q
Sbjct: 124 ELSCTDRQVDLLREGFDCVMRIGA-LHDLDVVARPVGQLSMRNCASPAYLARHGVPRTLQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+ +   +      F ++    +   +P    + VN+  +    C+ G G+  +
Sbjct: 183 DLAGHQLVHYVRNLGGRCAGFEYVQG-GQVQYQPMAGAVTVNNAEAYSAACLAGLGLIQV 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P   V ++     LV ++     P+  V   Y        +++AF  ++    R
Sbjct: 242 PAVGVAEHLQRGELVALLPAWQAPAMPVSLLYARQRHVPRRVQAFMQWLAEVLR 295


>gi|160899751|ref|YP_001565333.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365335|gb|ABX36948.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
 gi|222869730|gb|EEF06861.1| predicted protein [Populus trichocarpa]
          Length = 296

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 140/296 (47%), Gaps = 4/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +   VA S SFT AA  L  SQ  ISR ++ LE ++G +L +R+ R ++LT  
Sbjct: 1   MDLNAVHLLIKVAESRSFTQAATLLGTSQPRISRAVAQLEKDLGTRLLHRNTRSVSLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    + +   LE  +  + +    PSG LR+     LG+ +L   L + L  +P +
Sbjct: 61  GCALVDRCAPLIAGLEEARQLVSDRRCAPSGVLRMTAPSMLGRIVLVPLLGQLLREHPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI     ++ +D+  +  D A+R+  P+  S +I R L  +     A+P YL     P +
Sbjct: 121 QIDTSFTDRMVDMVEEGFDAAVRIG-PLADSRMIARALPPLRWVTVASPAYLAARGTPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +QEL +H+ +   +        + +LA     +  P    +  +S   +++  + G G+A
Sbjct: 180 LQELAQHSCMAVYNHYLGRRVPWQFLAGNGEMLDWPAPQTVTFDSGDPLVEGSLGGLGVA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + ++ V+++     LVR++      +  +   YP   + + ++KA    +  + +
Sbjct: 240 QVMEFAVREHLQAGRLVRLLPQHEGRARELSLVYPRTRQASPRIKALAQLLLAQTQ 295


>gi|116252903|ref|YP_768741.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257551|emb|CAK08648.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 300

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 134/299 (44%), Gaps = 13/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 3   DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    +  FL  YP+IQ
Sbjct: 63  RAYYDRCSEPLTHLLDAEQALTETQRKPEGLLKISVPVIFGQEVFYEFISSFLKTYPNIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N  +D+  +  D  IR  + ++ SS++ ++L     +  AAP YLK    P   
Sbjct: 123 IDLFVTNLFLDLIAENVDLGIRFGE-LKDSSIVAQRLGKSVRYLVAAPDYLKGRVLPTKP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +       +      W     R      +S  +    + ++  +   G GI 
Sbjct: 182 EDLKDHQCVLLNGRNGEA----EWHLVSGRKSVRLHVSGPVSSRDFDAVSAFTYRGHGIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LLP            LV ++ D  +    V+  YP       +L+ F   +    + WK
Sbjct: 238 LLPSTYCDQQIRRGELVHLLPDWSSEEIFVHAVYPTRRFLPARLQVFVEAL----KAWK 292


>gi|317404494|gb|EFV84903.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 334

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 136/290 (46%), Gaps = 7/290 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  G+F  A ++L + +S++SR +  LE ++G +LF R  R  +LT +G + +  
Sbjct: 33  AFIAVAAEGNFAKAGDRLGIGRSAVSRSVQKLEDQLGTRLFVRTTRSTSLTLEGERFYEQ 92

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                 ++     +++E     P+G+LR+ +T+  G+ ++   L+ F    PDI ++L+L
Sbjct: 93  CHPGVERIVQALDDMRELREGPPAGQLRVCSTVGFGRKVVAPLLQGFRHANPDISVELLL 152

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D+   D + D  D + R  + ++ S +I +K++ + M   AAP Y+     P S+ ++  
Sbjct: 153 DDGPTDFTTDRVDLSFRNGR-MEDSQVIAKKVIPMQMMLCAAPAYVARHGLPDSVDDIAG 211

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  + F     +  E    +    R +  P  + L  N    ++Q  + G G+A +  Y 
Sbjct: 212 HRCVNFRLASGRVYEWEFKVGGQLRKVAPP--AMLTFNDADLVLQAVLDGHGVAQMAGYQ 269

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V D+     LV  +          Y C+        +++ F +++  + R
Sbjct: 270 VCDHLRAGTLVACLPQYAPDDRGHYLCFLSRQHLPARMRVFIDYMTERIR 319


>gi|238025413|ref|YP_002909645.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237880078|gb|ACR32410.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 305

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 144/301 (47%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA ++ +S +++SR ++ LE  +G +LF R +R L LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAAREMGVSVATVSRGVARLEDRLGARLFNRTSRQLALTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L     E+Y + E  +   +E SV+P G +R+A  +  G   +   +  F  LYP + 
Sbjct: 66  RALCEKAGEIYRQAEAVEGAARELSVQPRGLVRLAVPMSFGLRWVAPLMPGFFRLYPQVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+  +  D A+R+   +  SSL+ R+L  +  +  A+P YL     P   
Sbjct: 126 VDLHLADATVDLVAEGFDAALRIAA-LPDSSLVARRLCAVTQYLVASPGYLAREGRPSHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+    +++       +  F   A  + P+       L+V +  +++   + G  IA 
Sbjct: 185 RELNGRACLSYAYRAHSDVWRFTNQAGDEEPV--MPAGPLRVTNSDALLPMLLEGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD--WK 298
           LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++      +  W+
Sbjct: 243 LPEFIASEYLADGRLEAILTDWSLTRGGLYFVTPSARARPAKVSALSDYFAEHLSEPAWR 302

Query: 299 F 299
           +
Sbjct: 303 W 303


>gi|190893473|ref|YP_001980015.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190698752|gb|ACE92837.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 297

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 137/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE
Sbjct: 1   MDTLTRIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R  S++  +++     ++E++ +  G+LRI+         +  +L +F    PD
Sbjct: 61  AGHTYFRSASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLIDFAAENPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H  A P ++++  E  
Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKISDFRVHLCATPDFIEHHPELE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              ++     I   D   +      +    +          ++VNS  + ++  + G GI
Sbjct: 180 HPSDISNVPFIV--DTNSRTQGSIRFYNPDNTTFAVAVSGPIEVNSPHATLRAALAGIGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL+PD+I +   ++  L+ +  D I     +Y  YP       K++ F +++
Sbjct: 238 ALIPDFIARKPIESGELLTLFNDYIPTDRGIYAVYPHRRYLPAKVRIFVDYL 289


>gi|53717207|ref|YP_105988.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67643307|ref|ZP_00442054.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121596794|ref|YP_989970.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124383253|ref|YP_001024453.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126447888|ref|YP_001078126.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|167003900|ref|ZP_02269679.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254174085|ref|ZP_04880747.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254200832|ref|ZP_04907197.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254204802|ref|ZP_04911155.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254357053|ref|ZP_04973328.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52423177|gb|AAU46747.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|121224592|gb|ABM48123.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124291273|gb|ABN00543.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126240742|gb|ABO03854.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|147748444|gb|EDK55519.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754388|gb|EDK61452.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148026080|gb|EDK84203.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160695131|gb|EDP85101.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|238524623|gb|EEP88055.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243060657|gb|EES42843.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 299

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF   A  GS + AA+ L +S++  SR ++ +E   G ++ +R  R LTLT  G+++
Sbjct: 6   AMQVFVETAERGSVSAAAQHLDMSRAMASRYVAFVEQWTGARMLHRTTRRLTLTAAGAQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  ++    E     + E    P G LRI  +    Q  +   + ++L  YP + + L
Sbjct: 66  LPLCRDMLGLAEHVATVVAEPGDAPRGALRITASAIFAQTHVTDAVLDYLARYPTVSVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++  D+  +  D AIR+   +   SLI R+L T      A+P YL     P    +L
Sbjct: 126 LVTDRTADLVDERIDLAIRITNAV-DPSLIARRLGTCRSALCASPGYLAEHGAPKRPHDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +T+             L     P   P    L  N  L +++    G GIALLP 
Sbjct: 185 TRHNCLTYAYFGQSLWH----LTRDGEPATVPVQGNLSANDALVLLRAATAGGGIALLPT 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +      LVR++ D   P   +Y  Y    +    ++   +F+  +  D
Sbjct: 241 FAAAEPIRTGALVRVLPDCAAPELGIYAVYASRKQMPLAMRTMIDFLAERFGD 293


>gi|118588109|ref|ZP_01545519.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118439731|gb|EAV46362.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 310

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 10/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L+ F  +A  GS   A  ++ LS S+ S +++GLE   G +LF R  R  TLTE 
Sbjct: 1   MRLEDLQFFVRIAELGSMAAAGREIGLSPSAASTRLTGLEKAFGSQLFARTTRRTTLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +       ++E  +  L+ S+  P G LR +     G+  +   L EF  LYPDI
Sbjct: 61  GRVLLQHARTAVGEIEQARSILEASTEAPRGSLRFSCNTFFGRKHILPYLVEFHELYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++   ++ +D+  +  D A+R   P+  SSL+ RKL        A+P YL     P +
Sbjct: 121 RLEMDFSDRIVDVIEEGYDMAVR-GAPLTDSSLLARKLGGNPRALCASPDYLARKGVPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H+ I         M  + +         E R   ++ +S        + G G++
Sbjct: 180 PEDLANHDCIAMAS-----MPYWYFNGPEGEIAFEIRKPIIKGDSGDLTYDAALHGLGLS 234

Query: 243 LLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L     V +   +  LV +++D  I  +  ++  YP +     K+ AF +F+  K
Sbjct: 235 LKSLAHVWEDLRDGRLVAVLQDYTIARTGAIWAVYPPSQFVPPKVTAFVDFLISK 289


>gi|121606876|ref|YP_984205.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595845|gb|ABM39284.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 298

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 136/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +R+F  +   GSFT AA+ L L +++++  +  LE  +G +L +R  R ++ ++
Sbjct: 1   MDRFHAMRLFTRIVELGSFTKAADDLQLPRATVTHAVQQLEKRLGTRLLHRTTRQVSASQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +     S+ +P GKLR+     L ++ +   + +F   YP 
Sbjct: 61  DGQAYYERCRRLLADLEEAETAFANSAAQPKGKLRVDLQGTLAKHFVLPVIADFFARYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R  + +  SS++ R++  +     A+  YL     P 
Sbjct: 121 IELEIGMGDRFVDLVREGVDCVLRAGE-LSDSSMVARRVARLRQVTCASRDYLARHGTPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +++ L  H  + F  L P+      +   ++  +   ++   + V+   + +  C    G
Sbjct: 180 TVEALRGHQAVNF--LSPQDGRPLPFEFLINGAVRSLQLQGQVAVSDADAYVACCAAHLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  LP Y V    D+   V ++         V   YP+  + + +++ F +++  
Sbjct: 238 LIQLPRYHVAARLDSGCFVEVLAPWRPAPMPVSVLYPQHRQLSPRVRVFVDWLVE 292


>gi|307294328|ref|ZP_07574172.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306880479|gb|EFN11696.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 287

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 130/283 (45%), Gaps = 6/283 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V    SFT AA+ L +S++++S+ ++ LE  +   LF R +R L LTE G +L    
Sbjct: 2   FAAVVEHRSFTDAAKALSVSKATVSKAVTRLEQHLDTSLFSRTSRRLALTESGKRLADHA 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  + +  +   ++ + + SG +R+   ++ G   +   + EF    P + I L L +
Sbjct: 62  ARILSEGQAAEEAARDETAELSGTVRLGAPMNFGLLRVAPLIAEFTRQNPQVDIDLHLSD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             ID+     D  IR+   +  SSL  R+L    +H  A+P YL     P    +L  H+
Sbjct: 122 ARIDMVEMGLDATIRIAD-MPDSSLRARRLADAKLHTIASPAYLDERGRPAHPSDLGSHD 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + + +     +  F+     +  +     + + VNS  +++     G GIA LPD+IV 
Sbjct: 181 CLCYSNTQTPDVWRFSGPGQQN--VVVQVRARITVNSGEAMLPALRAGVGIARLPDFIVG 238

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   +  L  I+ D   P   ++   P +     ++ A  +F+
Sbjct: 239 EGLASGELEEILVDWRPPPLGIHLVTPPSRLRPARVDAVLDFL 281


>gi|289625166|ref|ZP_06458120.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651350|ref|ZP_06482693.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330869162|gb|EGH03871.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 298

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 143/301 (47%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGS + AAE++  + S +SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  ++E+ +  L  S   P+G+LRI        + +  ++ EF   YP
Sbjct: 61  EEGKFFLERARHIIEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  ID+     D AIR+   +  S+L  R L +  ++  A+P YL+    P
Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRIG-VLPDSTLHARSLGSCLLNIVASPAYLQRHGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L +H L+ F  +           A  DR   +P IS    +S  ++    + G G
Sbjct: 180 KTAEDLAQHVLVGFTHVESLNQWPLRH-AEGDRLSIKPAISA---SSGDTLRHLVLEGVG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L D++  D+     LV +++   +     ++  Y    +   +++ F +F+  K   
Sbjct: 236 IACLSDFMTNDDLREGRLVCLLKGANSGYRQPIHAVYYRNSRLALRIQCFLDFMQEKLAG 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|226199649|ref|ZP_03795202.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225928235|gb|EEH24269.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 360

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 64  DLPALATFARIVVAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 123

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 124 ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 183

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 184 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 242

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 243 ADLCAHRCIVLGEQPR-----VEWRFDGSHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 297

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W++
Sbjct: 298 KSIWDVGPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 357


>gi|152987996|ref|YP_001346595.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963154|gb|ABR85179.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 317

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 136/298 (45%), Gaps = 13/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +GSFT A++QL+ + + +SR ++ LET +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   Y D
Sbjct: 61  AGQRYLLRCEQILAYVEEAEAEASDAHARPAGRLKLHSMTGIGQHYVIRAIAGYRQQYRD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + N+  D+  +  D AI +   +  S  I +++   +    A+P YL+    P 
Sbjct: 121 VTFDLTMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRRNGTPS 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVL 237
              EL  H+ +    L+   +    WL   D P G+  +S      QVN   ++ +    
Sbjct: 181 EPAELANHDCL---RLVSPVVPLDRWLF--DGPNGQEMVSIGASPFQVNVGDAMTEAIRS 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI +LP Y   D+     LVR++         VY  YP       K+K +  ++  
Sbjct: 236 GLGIGILPVYSAIDDLGKGTLVRVLPQHRLQQLNVYALYPSRQYLDAKIKTWVEYLKE 293


>gi|170734917|ref|YP_001774031.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820955|gb|ACA95536.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 305

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 138/301 (45%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE  +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARATGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTISEKAGEIYRQAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +     AAP YL+    P   
Sbjct: 126 IDLHLSDASVDLIADGFDAALRIAA-LPDSSLVARRLCAVTQFVVAAPQYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL     + +       +  F                 L+V +  +++   + G  IA 
Sbjct: 185 RELADRPCLPYAYRARSAVWRFT--NDAGDEESVMPTGPLRVTNADALLPTLLDGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD--WK 298
           LP++I  +   +  L  I+ D    +  +YF  P A     K+ A  ++      +  W+
Sbjct: 243 LPEFIAGEYLADGRLEAILPDWSLTTGGLYFVTPSARARPAKVTALSDYFAEHLGNPVWR 302

Query: 299 F 299
           +
Sbjct: 303 W 303


>gi|113867216|ref|YP_725705.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113525992|emb|CAJ92337.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 295

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  A   L +S S++ + ++ LE  +G++LF+R  R +TLT +G+     
Sbjct: 9   VFVQVAETRSFVAAGRLLGVSASAVGKSVARLEERLGVRLFHRSTRSVTLTAEGTLFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  V  ++E  ++EL E++  P G+LR++    L  +L+   L +F+  YPDI++ L   
Sbjct: 69  SRRVLAEIEAAELELAEATAAPRGRLRVSLP--LVSSLVLPVLGDFMRAYPDIELDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P   S L  R+L        A+P YL     P    +L  H
Sbjct: 127 DQLVDVIEEGFDAVVRTGEP-ADSRLSARRLGAFQAMLVASPDYLAQRGTPKLPADLTGH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +        P      S +  N+  + + + + G GIA LPD+ +
Sbjct: 186 ACLHYRFPHTGKLEAWPLRRAPGEPELALPTS-MICNNIETRLCFALRGLGIACLPDFAI 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++   + +L +++   + P+   +  +P +   + K++A  +F+  + 
Sbjct: 245 REQLADGSLCQVLAGHVGPAKAFHVLWPASRHPSPKVRALVDFLCERV 292


>gi|293395364|ref|ZP_06639648.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422048|gb|EFE95293.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 309

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 143/288 (49%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V   GSFT AA+ L L + ++S+ I  LE E+G+KL +R  R L++T +G 
Sbjct: 6   IEYISIFIQVVEQGSFTKAADILQLHRPAVSKAIQQLEDELGVKLIHRTTRKLSVTTKGD 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++    +  +++        S++ P G+L++   + L   LL  +L +F  LYPDI +
Sbjct: 66  EFYQRAKHLLAEVDGMMANY-SSTLPPRGRLKLDVPLALAHTLLIPHLAQFKSLYPDIDV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+  +K  D+  +  DC +RL + +Q SS I R+L  I M   AAP YL+   +P ++ 
Sbjct: 125 VLVSSDKKTDLIAEGVDCVVRLGE-LQDSSFISRRLGEIRMVTCAAPAYLQRYGKPATLT 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++H  + F     + + ++ ++      +     S + V++   ++   + G GI   
Sbjct: 184 ELEQHQAVNFFSDHSREVMEWKFIEH-GVVVSLRPASSMLVDNSDILLSCALAGLGIIQA 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               +  +     L  I+    + S  V   YP+    + +++ F ++
Sbjct: 243 SSDALAAHIASGELEEILTQYPSVSKPVSVMYPDRRYLSPQVRVFIDW 290


>gi|241205403|ref|YP_002976499.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859293|gb|ACS56960.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 300

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 13/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+ GSF+ AA  L +  S++SR+++ LE ++G+ L  R  R L+LT QG
Sbjct: 3   DLNDIAVFVKVAQYGSFSRAAHSLGMPVSTVSRKVTSLEEQLGVTLIQRTTRKLSLTAQG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   SE    L   +  L E+  KP G L+I+  +  GQ +    +  F   YP IQ
Sbjct: 63  RAYYDRCSEPLAHLLDAEHALTETQRKPEGLLKISVPVIFGQEVFYEFVSAFQKTYPKIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L + N  +D+  +  D AIR    ++ S+++ ++L     +  AAP YLK    PL  
Sbjct: 123 VDLFVTNLFLDLIAENIDLAIRFGD-LKDSTIVAQRLGKSVRYLVAAPDYLKGRVLPLKP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +EL  H  +       +      W     R      +S  +    + ++  +   G GI 
Sbjct: 182 EELKDHQCVLLNGRNGEA----EWHLVSGRKSVRLHVSGPISSRDFDAVSAFTYRGHGIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LLP    ++      L+R++ D  +    V+  YP       +L+ F        + WK
Sbjct: 238 LLPSTYCEEQIRKGELIRLLPDWSSEEIFVHAVYPTRRFLPSRLQVF----LEALKAWK 292


>gi|254236094|ref|ZP_04929417.1| hypothetical protein PACG_02053 [Pseudomonas aeruginosa C3719]
 gi|296388374|ref|ZP_06877849.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|126168025|gb|EAZ53536.1| hypothetical protein PACG_02053 [Pseudomonas aeruginosa C3719]
          Length = 303

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  SG F+ AA +  ++ S++S+ I+ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCTF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   LE  +      +  P G+LR+   +  G + L   + EFL  +P++ + +
Sbjct: 71  YERGVRILADLEEAER-CASENAAPRGRLRVNANVPFGHHFLLPLVPEFLAQHPEVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +DI     D A+R   P++SSSL+ RKL +  M    AP YL     P + Q L
Sbjct: 130 VLTDEVVDILEQRTDVAVRAG-PLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQAL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +    +  +       L      +  P     Q +   ++ +  V G G+A L  
Sbjct: 189 LGHNRLGANYVRTRSGWP---LRDAGEELVVPLSGNAQASDGEALRRLAVAGLGLARLAA 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKA 294
           + V+++     L+ ++E         V+  Y  +      +++AF +F+  + 
Sbjct: 246 FQVREDIAAGRLIPVLEAYNPGDLEEVHAVYVGQGGYLPLRVRAFLDFLAERV 298


>gi|323528747|ref|YP_004230899.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385749|gb|ADX57839.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 303

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 133/293 (45%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+  SF+ AA  L +  S++SR+++ LE  +G+ L  R  R L+LT QG
Sbjct: 6   DLNDIAVFVRVAQFESFSRAARALGMPVSTVSRKVTALEVRLGVTLLQRTTRKLSLTSQG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  SE    L   +  + ++  KP G LRI+  + L Q    G L  FL  YP IQ
Sbjct: 66  RAYFDECSEPLSHLYDAERVITQTQKKPEGVLRISGPVMLEQEPFYGFLSAFLKDYPQIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   N  ID+  +  D AIR  + +Q SSL+ +++         +  Y +N   P   
Sbjct: 126 VDLYFTNAFIDLIAENVDVAIRFGE-LQDSSLVAQRVGRSVRQLVVSADYARNHPLPSRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL +H  +    LI     +  W     R     R+S  +    +  +  + + G GIA
Sbjct: 185 DELSQHPCV----LINARNNETEWHLVSGRKAARVRVSGPVAARDFHIVNAFALRGHGIA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLP      +     LVR++ +  +P   V+  YP       KLKAF + +  
Sbjct: 241 LLPSSYCDPHIASGELVRVLPEWSSPEIFVHAVYPTRRFMPSKLKAFLDALKA 293


>gi|169796339|ref|YP_001714132.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213156925|ref|YP_002318970.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483800|ref|YP_002326025.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|239503648|ref|ZP_04662958.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB900]
 gi|301346100|ref|ZP_07226841.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301511204|ref|ZP_07236441.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301595044|ref|ZP_07240052.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332852005|ref|ZP_08433872.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332871758|ref|ZP_08440198.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149266|emb|CAM87149.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|213056085|gb|ACJ40987.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986947|gb|ACJ57246.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332729582|gb|EGJ60920.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332731228|gb|EGJ62526.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 313

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+
Sbjct: 10  LHAMHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGA 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ +
Sbjct: 70  TYAERCRQVISMVDEAEAEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +        D+     D ++ L + +  S  + R++ TI     A+P YL+    P S +
Sbjct: 130 EYTTSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPE 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +    + P    D++ L              L  ++   ++       G+ALL
Sbjct: 190 DLKNHACLRL--VNPSITPDWHLLNANGESCQIDIGGQLIADNPELLLDVVQQDMGVALL 247

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +   D   N  L  I+ +  +P   VY   P       K +A+ +++
Sbjct: 248 PMFSALDAVQNGRLCHILPEWRSPDIGVYTLLPSRHFIDAKTRAWLDWV 296


>gi|113867589|ref|YP_726078.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526365|emb|CAJ92710.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 315

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 132/290 (45%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ A+    + +S +SR+I+ LE ++G++L  R  R + +T  G
Sbjct: 3   DLNDLSLFAQVVEHGSFSAASRASGVPKSRLSRRIAQLERDLGVQLLRRTTRQVRVTPLG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     + ++ +  +  ++++  +P G LR++  I + Q LL   +  F+   P ++
Sbjct: 63  ESFYERCRAMLNEAKAAREVIEQAREQPGGTLRVSCPIAIAQILLAPAIGHFMRANPAVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   N+ +D+  +  D A+R+R+ ++ SSL  R      +   A+P  L +   P + 
Sbjct: 123 IELETTNRRVDVIGEGFDLALRVRESMEDSSLAVRTFGESQLMLVASPALLDSIGRPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q LD       G         +      +  I       L    ++ + +  + G+G+A+
Sbjct: 183 QALDGMP--GVGQPPHDGKHVWTLRCKTNDSIQIAYEPRLVTEDFVLLREAAIAGAGVAM 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP    +D   +  L  ++     P  T++  +P     T   + F +F+
Sbjct: 241 LPRMYCRDALESGELELVLPQYDMPVGTLHAVFPSRKGVTPATRRFLDFL 290


>gi|295676185|ref|YP_003604709.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436028|gb|ADG15198.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 305

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 13/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + +F  V  +G+F+ AA QL  + S++SRQI  LE  +G +L  R  R + LT+ G+++
Sbjct: 12  DMAMFARVVDAGNFSIAARQLGSTPSTVSRQIKRLEDSLGTRLLERSTRSIRLTDSGAQI 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R   ++            +    P GK+ I+  I   ++++   + EFL  +PD+ + L
Sbjct: 72  YRFCRDMVGAASGAVDVAGQGEGDPRGKVSISAPISFARSVIHPLVPEFLRRWPDVDVHL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  + D+D      D  IRL +      L  R+L  +     A+P YL     P   ++L
Sbjct: 132 VFADHDVDPLRHDVDLVIRLTRS-PPPGLAARRLGAVKWLLCASPAYLAERGTPAEPRDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  +  G+ +    +D  W    D       +      N   + +   + G GIA LP
Sbjct: 191 ARHACMYLGETV----DDNRWHFRRDSETQTVEVKGRYIANDASARLDAALHGLGIASLP 246

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFLKARD 296
           D++        ++VR++ D    +       +  YP       + +A  +++     D
Sbjct: 247 DFVAAQAISAGDIVRVLTDWAFEARPYMGPVWLLYPPNRFLPSRARALIDYLVSHLHD 304


>gi|260554583|ref|ZP_05826804.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411125|gb|EEX04422.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 300

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 139/298 (46%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA+  S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADVEVFLIVAKKLSISAAAIDLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTSYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR  + + +S+LI R L    +   A+P YLK  
Sbjct: 121 KYPDIQIEISISNRNVDLIAEGFDLAIRQGQ-LPNSTLIARPLEQAPLKLVASPAYLKRM 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYC 235
             P +++EL  H  I F   +P   +   W    D    +  P    L     + ++   
Sbjct: 180 GIPKNLEELKHHQCIAFE--LPSSGKITPWFLKNDNEEIQWIPTNRILVKEDIVGVVTLA 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G GI    D+IV +      L  I+      +      Y +    +   +A  +F+
Sbjct: 238 ESGLGICQSYDFIVNEKIQQGKLQPILNTYAGHTRPFSLLYAQHKHMSSATRALIDFL 295


>gi|146309716|ref|YP_001174790.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145316592|gb|ABP58739.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 295

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 127/297 (42%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR GSFT AA QL ++Q ++S+ I+GLE  + I+L  R  R ++ T
Sbjct: 1   MKRNLNDLFAFVTVAREGSFTRAAAQLGVTQPALSQAITGLENRMQIRLLTRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L       + ++E     L E   KP+G +RI     + +  L   L   L  YP
Sbjct: 61  AAGERLLNAIGNRFDEIEAELDMLSELRDKPAGTVRITCGPSVLKETLFPKLTPLLREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++   ++   DI  D  D  +R+   I    +       + M A A+P Y      P
Sbjct: 121 DIHVEFDANHGFRDIVADRFDAGVRMGDTIDKDMIAVPIGPQLRMAAVASPDYFSRFPIP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            +  EL +H  I    +    +  + W    D      R+S  L  N+   I+   + G 
Sbjct: 181 QTPHELTQHQCINQRQIKSGGL--YVWDFDQDGGDLNVRVSGQLTFNTSDHIVDAALAGF 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+A LP+    D+     L+R++E    P    Y  YP   + +         + ++
Sbjct: 239 GVAFLPEEEFGDHIAAGRLIRVLEPWCQPFPGYYLYYPSRKQPSPAFSLVMEALRVR 295


>gi|221065427|ref|ZP_03541532.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710450|gb|EED65818.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 291

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 140/291 (48%), Gaps = 12/291 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L  F   A   SF  A   L +S S++ + ++ LE ++G++LF+R  R + LT+
Sbjct: 1   MDSFSGLESFVRAADLLSFAEAGRALGISASAVGKNVARLEQQLGLRLFHRTTRQVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  H     +  +L   +  +Q ++  P G+LR++    +G   L   L EF   YP+
Sbjct: 61  EGTLFHERCRRILDELHDARAAMQAAAEAPRGRLRVSLP-TIGYRFLLPVLPEFQARYPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L  ++  +D+     D  IR  + +  S L+ R+L        A+P YL     PL
Sbjct: 120 VELDLDFNDHLVDVVEAGLDVVIRSGE-LADSRLVARRLGPFRFILAASPTYLAERGLPL 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H+ + +  L    +E++        PI       L  N+  +++   V G G+
Sbjct: 179 TPADLARHSSLRYRFLNSGKLEEWTLPGLPAMPI------SLVCNNMEAMLGAAVSGLGL 232

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           A +PD++ +D      L +++   +T S      +P + + + K++AF +F
Sbjct: 233 AYMPDFLARDALARGELQQVLAQQLTHSGQFSALWPSSRQLSPKVRAFVDF 283


>gi|238797536|ref|ZP_04641034.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC
           43969]
 gi|238718677|gb|EEQ10495.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC
           43969]
          Length = 302

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 130/287 (45%), Gaps = 10/287 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA  GSFT AAE   L +SS+S++IS LE  +GI+L  R  R L LT  G 
Sbjct: 5   LQDMALFARVAECGSFTRAAEMADLPKSSVSKRISQLEQNLGIRLINRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + LQ     PSG+LRI+T   LG  L+     +F   YPD+ +
Sbjct: 65  RYLVHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLVARLATDFQRQYPDVLL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++  +  +D+  +  D A+R  KP Q SSLI R+L     +  A+P+YL          
Sbjct: 125 EVLASDTMVDLVEEGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPNYLAQHPPLSHPS 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LDKH+ I         +           P+          ++ L   +  + G GI LL
Sbjct: 184 QLDKHHCIAHRAWQALILRCEGEFYRWQVPMQHV------TDNLLYARECALAGGGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P ++ ++   N  L+ ++         +Y  YP    N+  L  F +
Sbjct: 238 PAFLSREVVANRQLIEVLPQWRPEGNELYLVYPSRKLNSPALSCFID 284


>gi|330897904|gb|EGH29323.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 302

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+FD + + +F  V RSGSF  AA QL +  ++ISR++  LE ++  +L  R  R L LT
Sbjct: 1   MAFDLNDVALFVQVVRSGSFAQAARQLGMPSNTISRRVQQLEMQLDTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G + +         +     +L     +PSG +RIA   D         +  FL  YP
Sbjct: 61  QAGEEFYDRCVGAVDGVMEAAEQLASGRDEPSGLVRIAAMADFFDFFSMDWVAGFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCRE 179
            +Q++ +L +   D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDDHADLIADRLDIAFR-GSPLQDSGYVGRQLIDEGHDTMVASPAYIAVHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P S+Q L  H  ++ G            L   D  + E  I S    N+  ++ +  + G
Sbjct: 180 PDSLQSLHSHYCVSAGHRGGATAWR---LLGPDTKMHEVHIASRFNANTAQALRKATLAG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K R
Sbjct: 237 LGIALLPATLIRSDLRDGRLVPVLPRYQRTSHGLHVLYPSRQHLPPAVSAFIALVLEKLR 296

Query: 296 D 296
           D
Sbjct: 297 D 297


>gi|260778266|ref|ZP_05887159.1| LysR protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606279|gb|EEX32564.1| LysR protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 301

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 142/293 (48%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L VF+ + R GS T AA++L ++  S+S  +  LE ++G+ LF R  R + LTE G 
Sbjct: 6   FNQLTVFHAIVREGSITKAAQKLEMASPSVSNALKALEEQLGLPLFTRTTRRIELTEAGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH  TS+    L      + + S  PSGK+R+ T   + Q LLQ    EF   YP+IQ+
Sbjct: 66  LLHLSTSDSMSDLSLAFESISDLSKVPSGKVRLTTPRFVYQYLLQPIYAEFCQRYPNIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           ++ + +  IDI  +  D  IR    ++   +I R+L   +    +A+P Y++    P + 
Sbjct: 126 EISISDAAIDILNEGFDLGIRFGDRVE-EGMIARQLTPAMREALFASPEYIEQYGMPDTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H L+ +  +    +     L+     +       L VN    ++   + G GI  
Sbjct: 185 GALKQHKLVQYRFISSNQLAPLE-LSNQGERLTVEMPHALVVNDTGLMLDAALKGLGIGR 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + D +V+D   +  LV ++E+   P   +Y  + +  +   +++   +F+  K
Sbjct: 244 IVDPMVEDLFASKQLVPVLEEYWAPYSGLYVYFHKNTQKAKRVRVLIDFLLEK 296


>gi|260554169|ref|ZP_05826428.1| transcriptional regulator LysR family protein [Acinetobacter sp.
           RUH2624]
 gi|260404711|gb|EEW98222.1| transcriptional regulator LysR family protein [Acinetobacter sp.
           RUH2624]
          Length = 313

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+
Sbjct: 10  LHAMHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGA 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ +
Sbjct: 70  TYAERCRQVISMVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +        D+     D ++ L + +  S  + R++ TI     A+P YL+    P S +
Sbjct: 130 EYTTSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGIPESPE 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +    + P    D++ L T            L  ++   ++       GIALL
Sbjct: 190 DLKSHACLRL--VNPSITPDWHLLNTSGESYQIDIGGQLIADNPELLLDVVQQDMGIALL 247

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +   D   N  L  I+ +  +P   VY   P       K +A+ +++
Sbjct: 248 PMFSALDAVQNGRLCHILPEWRSPDIGVYTLLPSRHFIDAKTRAWLDWV 296


>gi|224824615|ref|ZP_03697722.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603108|gb|EEG09284.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 298

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +L     V   GS + AA    +  + I R++  LE  +G KL  R  R +TLT+
Sbjct: 1   MDTFKQLETLVAVVAHGSLSAAARIEGVVPAVIGRRLDALEERLGAKLLVRTTRSVTLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS  +  +  +  +L   +  +   S +  G LR++     G+  +  +   F  L+PD
Sbjct: 61  EGSAFYEESLRILAELAEAEAAVASGSARARGHLRVSAPAGFGRRHVAPHAASFQQLHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  D  DCAIR+   +  SSL+  +L   +    AAP YL     P 
Sbjct: 121 VKVTLDLSDRLVDLVRDRVDCAIRISD-LSDSSLVAIRLAENYRVVVAAPSYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +HN ++ G+   +             P+       L+ N    +  + + G G+
Sbjct: 180 TLDDLTQHNCLSLGESQSRGWT----FTRDGEPVNLKVSGTLECNDGAVLHDWALQGYGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                + VKD+     LV +++   +P + VY   P+      +++ F + +  
Sbjct: 236 TWRSLWEVKDDLSEGRLVTVLDSFSSPDYPVYAMVPQRKFLPLRVRHFIDHLKA 289


>gi|169797348|ref|YP_001715141.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213155837|ref|YP_002317882.1| transcriptional regulator, HTH-type [Acinetobacter baumannii
           AB0057]
 gi|215484788|ref|YP_002327023.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB307-0294]
 gi|301346549|ref|ZP_07227290.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB056]
 gi|301512876|ref|ZP_07238113.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB058]
 gi|301596054|ref|ZP_07241062.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB059]
 gi|332851895|ref|ZP_08433798.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332867954|ref|ZP_08437942.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169150275|emb|CAM88172.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|193076230|gb|ABO10858.2| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii ATCC 17978]
 gi|213054997|gb|ACJ39899.1| transcriptional regulator, HTH-type [Acinetobacter baumannii
           AB0057]
 gi|213988884|gb|ACJ59183.1| Putative HTH-type transcriptional regulator yhjC [Acinetobacter
           baumannii AB307-0294]
 gi|332729680|gb|EGJ61016.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332733655|gb|EGJ64814.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 298

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 10/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +  +F  VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+
Sbjct: 1   MDRLQQFYIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPD
Sbjct: 61  DGQRILPECQNLLFDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELPDFYHRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL   +   D+     DC +R+ + + +SSLI R +  + M   A+  YL++   P 
Sbjct: 121 IHLQLNSSDDLTDLIEKGIDCVVRVGE-LDNSSLIARFIGHLVMVNCASTQYLQDYGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L++H LI +   + +   +F +             S L VN+  + +     G GI
Sbjct: 180 QLNDLEQHKLINYAGAVGEKQGEFIYQGGT-----VMMDSALSVNNTEAYIAAACAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y V+D      LV ++     PS  +   YP       +L+ F N++
Sbjct: 235 IQLPYYDVQDKIEQGILVEVLSAYSAPSLPLNILYPNRSYIPKRLEVFMNWV 286


>gi|91227770|ref|ZP_01261997.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|269967933|ref|ZP_06181973.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|91188417|gb|EAS74712.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|269827456|gb|EEZ81750.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 314

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 129/292 (44%), Gaps = 9/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  SFT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVIFSALLKHKSFTAAAKSLGVSVSHVSKQLSQLEASLGIKLVQRTTRSFTPTEAGKTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +V   + +  +E++    + +G +R+  +   G   +   ++E   LYP +Q+++
Sbjct: 68  FHHCEQVVQAVSSATLEMETQRDEVAGLVRLGLSQSFGTLHIIPAIQELRELYPQLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  +   + +     I ++L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMLAEGLDLWVTNNEHLP-EGYIAQRLTDCQFVVAASPDYLLKHDTPAEPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + +        +   W  T D+     ++S    V+   ++    + G GIA L 
Sbjct: 187 SAHNCLIYRS---WERDYTGWAFTKDQQELNVKVSGNYSVDLAEAVRDAAIAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            Y++ D      L++++ D   + S   Y  YP       K+ A  NFI  K
Sbjct: 244 TYLLGDEFRTGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVINFIKQK 295


>gi|293395380|ref|ZP_06639664.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422064|gb|EFE95309.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 318

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V  SGSF+ AA +L  + S+ISR +S LE  + ++L +R  R L L+EQG 
Sbjct: 15  LAEMAVFAQVVESGSFSAAARRLGATPSAISRSVSKLEQALNLRLLHRTTRKLRLSEQGE 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            + +   ++            + S +P G + ++    +G  +L  ++ EFL  YP + +
Sbjct: 75  AVFQHCQQMLAAANAAMTVCGQGSAEPEGLVSVSVPKAVGHFVLHPHMPEFLRRYPQVDV 134

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L+++ +D+  D  D A+R+     S  LI R+L+T+     A PHYL     P   Q
Sbjct: 135 RLRLEDRYMDLIEDRVDLALRITDR-PSPGLIGRQLMTVDHLLCATPHYLAQHGTPQQPQ 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ I  G+        F       + +          N     +       GI  L
Sbjct: 194 DLAQHSCIYLGETPNDARWKFR---RAGKTVTVKVGGRYAANHTGVRLDAVRQHIGIGSL 250

Query: 245 PDYIVKDN---PNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIF 291
           P +  +       +V+++ D    S     ++  Y        KL+ F ++I 
Sbjct: 251 PYFTAQQALAKGEVVQVLADWDFLSSYQGGLWLLYAPTQHLPAKLRVFIDYIV 303


>gi|190574039|ref|YP_001971884.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011961|emb|CAQ45583.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 305

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 11/302 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF  V   GSFT  A  L  + S +SR ++ LE  +G +L  R  R +
Sbjct: 1   MSRKFDYLGDVEVFLAVVEHGSFTAGAVALSTTPSVLSRAVTRLEARLGRQLLQRTTRRV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G          +  L+  + ++       +G++R++     G   L   L  F  
Sbjct: 61  GLTDAGRLYLEQVRTAFGLLDDAERDVLAQDGALAGRVRLSVPTTYGHYRLPPVLARFAQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP +Q++L + N+++D+  +  D AIRL + +  S L+ RKL    +   A+P YL+  
Sbjct: 121 QYPQVQVELNITNRNVDLVAEGFDLAIRLGQ-LPDSGLVGRKLEDAPLVLVASPEYLQRR 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYC 235
             P ++ +L +H  + F  ++P+      W+   D    +  PR S    +  L ++   
Sbjct: 180 GTPQTLDDLQQHLCLPF--VMPRTGRLAPWIFRDDGRDVDWLPRSSIETSDDVLGVVSLA 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G GI    ++IV++      LV ++  +   S      Y    + +   +A    +  
Sbjct: 238 EQGIGICQSYEFIVRERLLRGQLVEVLPQLRGRSRPFSVIYAPHRRQSAAARAMIELLVE 297

Query: 293 KA 294
            A
Sbjct: 298 NA 299


>gi|108763780|ref|YP_631354.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108467660|gb|ABF92845.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622]
          Length = 295

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 5/292 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D++  F  V  +GSF      + L++S+  + ++ LE+ +G++L  R  R L+LT+ G 
Sbjct: 6   LDEIFAFMAVVDAGSFVSGGRAIGLTRSAAGKALARLESRLGVRLLNRTTRHLSLTDDGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H    +V   L+  +  + + +  P G LRI      G+  +   LK++L  +PD+Q+
Sbjct: 66  VFHEHCQQVLAALDDAEASVGDHTGTPRGVLRITVPDAFGRLHVLPVLKKYLQTWPDVQV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  DI  +  D A+R+      + L+ R +    +   AAP YL    EP +++
Sbjct: 126 EVSFTDRVADIIEEGYDLAVRINVTSTDTRLVSRLVAQHRVFVCAAPSYLAARGEPQTLE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ + F     +              +     S L+++S  +I    V G GIA L
Sbjct: 186 ELATHDCLLFSSRARRQRWRL--RPKGGAYVTVEGQSRLRLDSGEAIRDAAVAGLGIAFL 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P ++V ++     L  ++    T    +   YP       K++ F + +  +
Sbjct: 244 PSFLVDEDLARGRLKALLPSCETEVVRIMAFYPSKRHLPAKVRRFIDLLVEQ 295


>gi|126442519|ref|YP_001061616.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126457092|ref|YP_001074555.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134282920|ref|ZP_01769622.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167905434|ref|ZP_02492639.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167913727|ref|ZP_02500818.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|217424464|ref|ZP_03455962.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226199179|ref|ZP_03794740.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237509820|ref|ZP_04522535.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242314044|ref|ZP_04813061.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254187185|ref|ZP_04893699.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198985|ref|ZP_04905403.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254263712|ref|ZP_04954577.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254296821|ref|ZP_04964275.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|126222010|gb|ABN85515.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126230860|gb|ABN94273.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|134245568|gb|EBA45660.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|157806661|gb|EDO83831.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157934867|gb|EDO90537.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169657157|gb|EDS88551.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|217392388|gb|EEC32412.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225928778|gb|EEH24804.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002025|gb|EEP51449.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242137283|gb|EES23686.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254214714|gb|EET04099.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 330

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 137/306 (44%), Gaps = 9/306 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 8   MTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKL 67

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EFL 
Sbjct: 68  ALTEAGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLPEFLR 127

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++Q+ + N+ ID+  D  D A+R+R +P QS++++ R L         AP  L+ 
Sbjct: 128 RYPEVRVQIRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVGAPSLLQQ 187

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL+  +L   +  T           FN +A             L     ++I +  +
Sbjct: 188 NAPPLAPDDLAGFD--TLDTPSGDGRHVFNLIAPDGTRHTHEHEPRLVTADLMTIREAVL 245

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 246 DGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 305

Query: 294 ARDWKF 299
             + ++
Sbjct: 306 LDNERY 311


>gi|194367110|ref|YP_002029720.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349914|gb|ACF53037.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 301

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 133/297 (44%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+ R+F  V  S SFT AA+QL L +S++S  I+ LE  +G +L  R  R ++ T 
Sbjct: 1   MDRIDRFRIFTRVVESASFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVSTTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H     +  ++E  +   ++   +P G L+I     +G+ ++   L +F   YP 
Sbjct: 61  DGDVFHARCLRLIAEVEDAESLFRQDDAQPIGLLKIDVPSRIGRRIIAPALPDFFARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L + ++ +++  D  D  +R+   +  SSL+ R L  +     AAP YL+    P 
Sbjct: 121 VELDLGMTDRAVNLIEDGCDAVLRVGH-LGDSSLVARTLGQLDFVNVAAPSYLREHGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  + +       +E + W         +P    ++VNS  + +  CV G G+
Sbjct: 180 HPADLPQHRAVNYASPTTARVEPWEWQDGSQLRT-QPMPGWVRVNSAEASIACCVAGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V+       LV +M   +     V    P       +++ F  ++    R
Sbjct: 239 LQIPRYDVQAELHAGALVEVMPQYVAQPLPVTLLQPHRQHRAQRVQVFIEWLLPLLR 295


>gi|332526828|ref|ZP_08402928.1| transcriptional regulator [Rubrivivax benzoatilyticus JA2]
 gi|332111229|gb|EGJ11261.1| transcriptional regulator [Rubrivivax benzoatilyticus JA2]
          Length = 298

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 4/291 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LR+   VA  GSFT AA++L L ++++S  +  LE  +G +L  R  R ++LT+ 
Sbjct: 1   MSPEDLRIVLRVAELGSFTEAAQRLGLPRATVSTAVRRLEERLGARLLQRTTRRVSLTDD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        +V   L+  +   Q+     +G+LR+   + + + L+   L EFL L+P +
Sbjct: 61  GRLFVERCQDVLADLDELRTMFQQQPQALTGRLRVDMPLAMARALVLPRLPEFLALHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++   ++ +D   +  D  IR+   + +  L+ R L    M   A+P Y+    EP S
Sbjct: 121 AVEIGAADRRVDPVREGYDAVIRVGAVV-AEQLVGRPLGAYTMVNVASPGYVARHGEPRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H L+ +   +      F +LA             + VN+  + +  C  G GI 
Sbjct: 180 VEDLAAHRLVHYQPNLGDRPAGFEYLAADGSLRSVTMAGVVTVNATDAYLAACEAGLGII 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+   +   +   LV ++   + P   V    P       +++AF +++
Sbjct: 240 QIPEASARPGLEAGRLVALLPAFVPPPMPVTLLLPHRRHLPRRVRAFADWV 290


>gi|162149613|ref|YP_001604074.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161788190|emb|CAP57795.1| putative transcriptional Regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 300

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +  F  V  +GSF+ AA  L++ Q ++S+ I+ LE+ + + L  R   GLT TE
Sbjct: 1   MDRYQAMATFVRVVETGSFSAAARHLNVGQPAVSKTIAQLESRLQVSLLIRSTHGLTPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +        + +  ++  + +    SG+LR++      +  +   L  FL  +P 
Sbjct: 61  VGQSFYERARNAIQEADEAELAAKGAGAGLSGRLRVSAATTFARLHVIPKLPHFLAAHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + +ILD++ ID+  +  D ++R+   +  S+ + RK+ T      A P YL    +P 
Sbjct: 121 LDVDIILDDRMIDLVAEGVDISLRMGM-LSDSTAVARKIATGGRSVLATPAYLARAGKPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S  +L  H  I +        +   W  T D       +   L+V++   +    +   G
Sbjct: 180 SPADLANHEAIIYSQ------QPNVWSFTRDGAAVSVSVGGRLRVSAAEGLRAALLADMG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +  D++     +N  +VR++E    P   ++  +P     T K + F  F+
Sbjct: 234 LTIASDWMFAPELENGAIVRVLEAWSLPPIGLWAVFPAGRMMTAKARRFAAFV 286


>gi|330822744|ref|YP_004386047.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|329308116|gb|AEB82531.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 312

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F+++ R GS +  A +L L+  ++SR+++ LE  +G++L  R  R  +LT +G + 
Sbjct: 10  EMAFFHLLVRCGSLSATARELGLTTPAVSRRLALLEQRLGVQLLNRTTRRNSLTPEGEEY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +E  +  L+ S  +P G LR+  T+  G++ +   +  F   YP +QIQ 
Sbjct: 70  LVQARRILADIEDVEHNLRRSMAEPLGLLRVNATLGFGRSHIAPVISRFCKTYPQVQIQF 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  IR  +P   + +I RK+        AAP YL+    P    +L
Sbjct: 130 HLSVTPPPLTDDAFDVCIRFGEP-PDARVIARKVAANRRLLCAAPAYLERHGTPRVPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I+              L+   R         +  N     + + + G GI +  +
Sbjct: 189 ARHQCISIHHGQDAYGIWR--LSAGRRTESVKVAETMVTNDGDIAVAWALDGHGILMRAE 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +     +  L +++E   TP   +Y  YP   +   ++ AF +F+  + 
Sbjct: 247 WDIDKYLRSGRLRQVLEQYSTPPADIYAVYPSRHQKARRVTAFVDFLCAEL 297


>gi|77458299|ref|YP_347804.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382302|gb|ABA73815.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 308

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   A +GSF+ AA  L L+ +++SR ++ LE  +G++LF R  R L+LTE G
Sbjct: 14  TLANLESFVRSAETGSFSAAARLLALTPAAVSRNVAILERNLGVRLFQRSTRKLSLTEVG 73

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        L+     +     +P+G L+I+     G + +   L EFL  YP I+
Sbjct: 74  ESFLASIGGNLDALQAAIATVATERGEPAGVLKISLPPTFGIDHMLPLLPEFLARYPLIR 133

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +   +N+ +D+  +  D AI     +    ++ R L +  + A A+P YL     P   
Sbjct: 134 PEWHFENRQVDLIAEGYDVAIDGGFELT-PGVVARPLSSAEVLAVASPAYLAGRTLPRHP 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I    L    +  +                 + +N  +++ +  +LG G+ +
Sbjct: 193 ADLADHQGIVMRGLRTGRLRQWQMHNETGEQASALLNPSIVLNDPMAMRKAALLGLGVTM 252

Query: 244 --LPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             LPD   + +   LV+++ D    +  +   YP       K + F +F+   
Sbjct: 253 LVLPDVSAQIERGELVQLLPDWQCDAGAISLYYPSRTLLPAKTRVFIDFVVEA 305


>gi|330941811|gb|EGH44557.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 305

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTVLIKQLEAHLGVQLLQRTTRQVSATP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +        +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEASFSAIGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +   C +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 IRLEIGMSDRPVDLIREGVGCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++QEL +H +I +            ++A     +       + VNS    +  C  G G+
Sbjct: 180 NLQELVQHQVIEYFSTSTGKCYGLEFMAD-GMGVEHASACSIAVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V     +  LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVAAQLRSGVLVEVLRLHRPPPLPLTALYPPHRQLSRRVRVFVDWLVE 292


>gi|327191164|gb|EGE58208.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 294

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 6/287 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA   SF  AA+ L +S  ++SR +S LE  +G +LF R +R L LT+ G +L    
Sbjct: 2   FAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFGLRLVDSA 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +Y + E  +   +E + +P G +R+A  +D G   L   L +F  L+P++ I L + +
Sbjct: 62  ARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEVSIDLHMSD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             +DI  D  D A+R+   +  SSLI R+L  +     AAP YL     P   +EL  H+
Sbjct: 122 AVVDIVGDGFDAALRIA-VLPDSSLIARRLTPVDRFILAAPAYLDRYGVPEHPRELAAHH 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + +     + +  +       R         L+  +   ++   + G GI  LP+++  
Sbjct: 181 CLGYAYRARQDV--WRLRNGEGREEVVVPSGSLRATNSEVLVPMALRGLGIIELPEFLAH 238

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           D   +  L  I+ D   P+  +YF  P A     K++   +F+  + 
Sbjct: 239 DYLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLSDFMMARL 285


>gi|260555408|ref|ZP_05827629.1| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           19606]
 gi|260411950|gb|EEX05247.1| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           19606]
          Length = 313

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+
Sbjct: 10  LHAMHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGA 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ +
Sbjct: 70  TYAERCRQVISMVDEAEAEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +        D+     D ++ L + +  S  + R++ TI     A+P YL+    P S +
Sbjct: 130 EYTTSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPE 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +    + P    D++ L              L  ++   ++       G+ALL
Sbjct: 190 DLKNHACLRL--VNPSITPDWHLLNANGESYQIDIGGQLIADNPELLLDVVQQDMGVALL 247

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +   D   N  L  I+ +  +P   VY   P       K +A+ +++
Sbjct: 248 PMFSALDAVQNGRLCHILPEWRSPDIGVYTLLPSRHFIDAKTRAWLDWV 296


>gi|190895386|ref|YP_001985678.1| transcriptional regulator LysR family [Rhizobium etli CIAT 652]
 gi|190699331|gb|ACE93415.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 299

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 134/300 (44%), Gaps = 9/300 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LRVF  VA   SFT AA++L +S +  S+ +  LE  +G +L  R +R ++LTE
Sbjct: 1   MDTLTSLRVFCTVAELKSFTAAADRLGVSPAMASKHVMQLENRLGTRLLNRTSRHVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G      T E+  +L+  +  +   +V P G L+++  +          L  +   YPD
Sbjct: 61  TGRLYFNQTREMLERLDEVEDAIGNVTVAPRGTLKLSAPVWAATGYFTDMLAAYNRRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + + L L  + +++  +  D A+R     +    L+ R L  +     A+P YL     P
Sbjct: 121 VCLDLDLSGRLVNLVDEGFDLALRATSQDRLDPGLVARPLTNVQFRLMASPDYLARTGRP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ EL+ H L+ +  +    + +   L   D P      + +  ++   +    + G G
Sbjct: 181 QNVAELNGHALLRYSGV---NLGESMSLEGPDGPHKITFRTVMLSDNETIMHLAALRGMG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +A LP ++ + +     L  ++  +    + T+Y  YP     + K++ F +F+    R+
Sbjct: 238 VAFLPAWMAEQDLEAGRLEIVLPAITLGFNSTLYAVYPSRKYLSAKVRTFIDFLTASTRE 297


>gi|107022543|ref|YP_620870.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116689492|ref|YP_835115.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170732798|ref|YP_001764745.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105892732|gb|ABF75897.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116647581|gb|ABK08222.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169816040|gb|ACA90623.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 302

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  L  F  +  +GS + AA +L LS S +S++++ LE+ +G++L +R  R  TLT+ G
Sbjct: 6   DFPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESRLGVRLLHRTTRQQTLTDDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  +++     SG LR+    +LG+  +   +  F   +P + 
Sbjct: 66  AQFHAQVLRILAEVEHAETLMRDRRGTVSGVLRVTAPGELGRLRIAPLVAAFQQRHPQLT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P YL     P   
Sbjct: 126 VQLMLTDAVVDLLAADIDVAVRIGN-LADSTMIARELAPNHRVLCASPGYLAAHGWPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I  GD                  +     + L  N   +     + G+GIAL
Sbjct: 185 AELRAHRCIVMGDQPRAEWR----FDGAQGGVAVEVTAALLTNDGGAARTLALEGAGIAL 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD-WK 298
              + V    D   LVR++      +  ++  YP A     +++ F +F+  + RD W+
Sbjct: 241 KSIWDVGADLDAGRLVRVLPAFEASAAPLHAVYPGARHVPLRVRTFVDFLREQLRDAWR 299


>gi|326388495|ref|ZP_08210090.1| putative transcription regulator protein, LysR [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207043|gb|EGD57865.1| putative transcription regulator protein, LysR [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 316

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 22/308 (7%)

Query: 3   FDWDK-LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+   ++ F  V   G F  AA +  L+ SS++RQI  LET +G  L  R  R +++T 
Sbjct: 1   MDFHAAMQAFVAVVDEGGFAPAARRAGLAPSSLTRQIDALETHLGTILLNRSTRRVSMTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   +      + E +  P G LR +  I   +  +   +  F+  +P 
Sbjct: 61  AGQAYYANAVRILDDIAAANRSVSELNGPPRGILRASLPIAFARLHVTPFIPRFMQEFPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++++ ++ + +     D AIRL   +  SSL+ R+L        A+P YL     P 
Sbjct: 121 IELEILVSDEPVSLVEQRIDVAIRLG-VLPPSSLVARRLAPHRRILCASPAYLARAGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              EL +H  +TF         +  W+   D  +   RIS  L+ N   ++ +  V G G
Sbjct: 180 DPSELARHACLTFT----YADGERGWIYRKDGAVERLRISGPLRANHAEALKEAAVAGMG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP------------SFTVYFCYPEALKNTGKLKA 285
           + LL  +++ +      LV ++ D                   V+  +    K + K++A
Sbjct: 236 LTLLATWMIGEELAQGYLVPVLTDWHIDIGRPAGADPLVGEPGVHALFLPDRKTSPKVRA 295

Query: 286 FRNFIFLK 293
           F +F+  +
Sbjct: 296 FIDFLQAR 303


>gi|206576830|ref|YP_002238652.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288935617|ref|YP_003439676.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206565888|gb|ACI07664.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288890326|gb|ADC58644.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 303

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 136/290 (46%), Gaps = 6/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + VF  V   GSF+  AE++ +S + +   I  LE  +G++L  R  R  +LT+ G 
Sbjct: 4   LESMAVFVRVVDRGSFSAVAEEMRISGTMVGLHIKALEEHLGVRLLNRTTRRQSLTDFGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E ++ +      KP GKLR+   +  G + L     +FL+ + D+ +
Sbjct: 64  VYYQSCRRILADIEDSESQAFALHQKPRGKLRVGCPVSFGVHALSPVTAQFLIEWTDMAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L +K +D++ +  D  I++ + +  ++L+ R +        A+P Y+K   EP++ +
Sbjct: 124 DLVLSDKSMDMADEGLDVMIKIGELLHVNTLVARPIAPYRSVMCASPAYIKRAGEPITPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  + F   I         L    +P+  P    +  N+  ++ +  + G GI + 
Sbjct: 184 ELCHHRCLGFAHPIAANEWT---LQREGKPVRAPVNITMTCNNGEALRRAALNGLGIIMQ 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P+ ++ ++     L+ +M +    +  V+       +   K++ + +F+ 
Sbjct: 241 PEILLAEDLQHGRLLPLMSEFQPLAKPVHILTFANRQQLPKIRLYVDFLL 290


>gi|187922437|ref|YP_001894079.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713631|gb|ACD14855.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 312

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 145/291 (49%), Gaps = 9/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +LE  +  +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQVLTELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R++ T H+   A+P YLK    P ++ +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARQIATAHLVLCASPAYLKRHGTPKTVADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +  +    +      AT D          L VN   +     + G+GIA+L  
Sbjct: 187 ARHNYLQYAGVSALEIAP----ATGDASPRVRLTGNLIVNHLEAQRVIVLQGAGIAMLGT 242

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++ D+     LV ++ D + P    ++  Y      + K+++F +F+  +
Sbjct: 243 EVIGDDLAAGRLVPLLVDEVPPRELPIHVVYASRRHLSAKVRSFVDFLAER 293


>gi|157374363|ref|YP_001472963.1| carbonate dehydratase [Shewanella sediminis HAW-EB3]
 gi|157316737|gb|ABV35835.1| Carbonate dehydratase [Shewanella sediminis HAW-EB3]
          Length = 313

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 138/291 (47%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    E     +   +    G L++  +   G   +   L EF+  +P++++
Sbjct: 65  LLYTQGEELLRDAEQAIASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMTTHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y+K   +P   +
Sbjct: 125 QVSLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLAASPEYIKLHGQPDRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    V G G+  
Sbjct: 184 QLVDHNCLVY---QGEWHEHSVWQFKQGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++D      LV +++D  +T    +   YP       K+ AF +FI
Sbjct: 241 LASYLLEDEVAKGTLVPLLQDWQLTHHLPLQAVYPRRKHLAPKVSAFIDFI 291


>gi|120610047|ref|YP_969725.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120588511|gb|ABM31951.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 303

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 141/302 (46%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R++  V  +G+FT AA+ L L ++++++ I  LE  + ++L  R  R +T+T 
Sbjct: 1   MDQIQAMRIYARVVEAGTFTRAADSLQLPKATVTKHIQALEARLRVRLLNRTTRRVTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +    +  +  +  +   PSG+LR+     + + L+  +L+EF   YPD
Sbjct: 61  DGAAYYDRAVRLLADFDDIEASMTHARATPSGRLRVDVGTAMARLLIIPHLEEFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L + ++ +D+  D  DC IR    +   SL+ R++  +     A+P YL+    P 
Sbjct: 121 IQLDLGVSDRIVDLIGDNVDCVIR-GGELTDQSLVARRIGLLEFITVASPAYLERHGTPA 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGS 239
              +L+  H  + +    P+    +      D  + E    S L VN   + +   + G 
Sbjct: 180 QPLDLENGHRSVIY--FSPRTSRRYPLEFHRDGEVIEIGGPSQLAVNESNAYLAALLAGR 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLK 293
           G+  +     +   +  +LVR++ +   P   VY  YP     + +++AF ++   +F +
Sbjct: 238 GVGQVTTLQAQGHLERGDLVRLLPEWSHPLLPVYVVYPPNRHLSARVRAFVDWAAELFAR 297

Query: 294 AR 295
            R
Sbjct: 298 ER 299


>gi|311280536|ref|YP_003942767.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308749731|gb|ADO49483.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 298

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + ++L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTRAAARLGVSQSALSHAMKALEARLNLRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++    +    +LE     + + +   SG +R++      + LL   LK FL  +P I 
Sbjct: 65  ERVIACLAPRLDELERELENIVQLNGVISGNIRLSAGEHAARRLLWPKLKPFLQAWPQIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L++DN  +DI     D  +RL + +    +  R    + M A  +P Y      P + 
Sbjct: 125 IELVVDNGFVDIVDGRFDAGVRLGESVDKDMVAVRIGPDMRMAAVGSPGYFAARGIPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL +H  I     +P     ++W    D +P+       L  N     +   V G GI 
Sbjct: 185 HELQQHRCINM--RLPTAGGLYHWEFEKDGKPLRVGVEGQLTFNLLAERVDAIVSGFGIG 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V+D      LVR++E         Y  YP   ++        + +
Sbjct: 243 FVPEDMVQDELRAGALVRVLESWCPTFPGYYLYYPSRRQHPPAFALLIDAL 293


>gi|27366629|ref|NP_762156.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27358195|gb|AAO07146.1|AE016808_166 Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 305

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 138/299 (46%), Gaps = 12/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF  V  SGSF+ A   L+++ SS++R I  LE  +   LF R  R L LTE+G 
Sbjct: 2   LELLKVFDQVVESGSFSQAGRALNMAPSSVARNIDSLENRIKTTLFKRSTRQLILTEEGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++ +S++    +    E++ +   P G LRI+     G   L   + EFL  YP IQI
Sbjct: 62  YFYQQSSKILRDSDNLLAEMRGNHGVPEGILRISVFESFGNLCLTPLIPEFLERYPKIQI 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L LDNK +D++ D  D AIR+  P Q S L  R L+T +    A+P Y+         +
Sbjct: 122 ELELDNKLVDLNSDNVDMAIRIGTP-QDSRLKARHLLTNYTALVASPAYINTHSPITKPE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN +       +    F   +T  + +       L       ++   + G+G+ LL
Sbjct: 181 DLQQHNCLLISHERQRNYWYFRQKSTTRKLM---VAGNLISKGGSPLLCAALQGTGVLLL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +++K   ++  LV ++           S  ++  Y         L+ F +F+  K +
Sbjct: 238 SKWMLKPYLESGQLVELLPSWTATHGELGSGEIFAIYKNTQYPKPHLRVFLDFLLEKLK 296


>gi|117617507|ref|YP_857071.1| transcriptional regulator [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117558914|gb|ABK35862.1| transcriptional regulator [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 325

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 126/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V  +GSF+  AEQ  L+ S +S++I  LE E+G++L YR  R LTL+E G  
Sbjct: 29  DDLILFAQVVEAGSFSKVAEQNSLTNSVVSKRIGRLEEELGVQLLYRTTRRLTLSEAGKA 88

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++    V          +     K SG +R++     G+ LL   + +F   +P + ++
Sbjct: 89  LYQGAKNVKAAALDAFDAVAGFGEKVSGHVRMSVPTISGELLLADAVADFCQQHPGLTVE 148

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +++  +  D  IR    +  SSLI R ++       AAP Y++    P    +
Sbjct: 149 MSLDNRFVNLVEEGFDLVIRTGY-LDDSSLIARHILDSQWVICAAPAYVRRFGAPREPSD 207

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + +        E        +             ++  ++ +  + G GI  +P
Sbjct: 208 LLTHNCLRYAYQSTGASEWA--FKGEEGNYLLSVSGSFCTDNAGALRKAALGGRGIVYVP 265

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +     LV +  D +     +Y  YP   +   K++     I  +
Sbjct: 266 RCLVYHDLMNGELVDLFPDQVGKKLGIYAVYPFTRQPPRKIRLLIEHIRQR 316


>gi|33521052|gb|AAQ21353.1| Csw018 [uncultured bacterium]
          Length = 301

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 134/302 (44%), Gaps = 13/302 (4%)

Query: 1   MSFDWDK-----LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D      + +F + A +G+FT AA Q  L+ +++SR I  LE  + ++LF R  R
Sbjct: 1   MPRQFDDVMLGSIELFCLAADTGNFTAAASQAGLTPAAVSRAIGRLEDRLQVRLFVRSTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G        +   ++   +  L  +  +P+G++R++    LG   +   L  F
Sbjct: 61  KIRLTDGGRAYFEQCRQALAQINEAERALTGTQAEPAGRIRVSVPTTLGHCRILPALPGF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP +Q+++ L N+++D + D  D AIR R     S L+ RKL+   +     P YL+
Sbjct: 121 RKRYPKVQVEVQLSNRNVDFTTDEFDLAIRARAQ-ADSGLVARKLMDAELVVVGTPAYLR 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQ 233
               P S  +L KH  I F  L+P       W         E   S      +  L ++ 
Sbjct: 180 KAGVPKSPDDLAKHECIQF--LLPSTGLLVPWSFHHQGQDLELATSGGFTCTDDLLGMVT 237

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     +IV+D+     L  +++D    S      YP A     +++AF + +
Sbjct: 238 LARHGAGLLQTYRFIVEDDLAQGRLREVLKDFGGRSRPFSIIYPGARHMPLRVRAFVDHL 297

Query: 291 FL 292
             
Sbjct: 298 IE 299


>gi|328470766|gb|EGF41677.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 300

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 147/302 (48%), Gaps = 10/302 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D   +FY +   GSF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G
Sbjct: 3   NTDDYIIFYHLVEQGSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    VY  + T +  +       SG ++I      G+ +L G + EF   YPDI 
Sbjct: 63  QSFFVHAKAVYQAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDIN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P   
Sbjct: 123 IDMELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL KHN + +        E   W    D  + +  +   L  N+  ++    +LG G+ 
Sbjct: 182 IELTKHNCLVYSYQETGARE---WAFKADDKMYQVTVDGNLCTNNSSALRNVALLGQGVI 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDW 297
            +P  +V ++    +L+++ ++       +Y  YP   +   K+K F + ++   ++++ 
Sbjct: 239 YVPRVLVYEDLKQGSLIQLFKEETAKCLGIYAVYPYTRQQPEKIKIFIDHLYNSFQSQNH 298

Query: 298 KF 299
           +F
Sbjct: 299 RF 300


>gi|238911787|ref|ZP_04655624.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 302

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 145/300 (48%), Gaps = 14/300 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +  + + ++  V   GSF  AAE L L   +++R +  LE ++G+KL +R  R +++
Sbjct: 1   MQLNMLEAMNIYVNVVEQGSFIRAAEVLELHCPAVTRAVQNLEHDLGVKLLHRTTRQVSM 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G + ++    +  +L+  +     S+  P G+LR+   I L + ++   L +F   Y
Sbjct: 61  TDEGEEFYQRCLSLLSELDDVRRLF-SSTQPPKGRLRLDVPITLARAVIIPALGDFQNRY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI+I L   ++ ID+  +  DC IRL + +  SS + R+L T  M   AAP YL     
Sbjct: 120 PDIEIVLGTSDRKIDLIAERVDCVIRLGE-LNDSSFVARRLGTAAMVTCAAPSYLAKHGT 178

Query: 180 PLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVL 237
           P SI EL K H  + F       ++   W  TVD  I   +I S + V++  + +   + 
Sbjct: 179 PHSIDELMKSHRAVNF--FSNHSLQIMEWKFTVDGSIASIKIPSSILVDNSEAFLSCGLA 236

Query: 238 GSGI--ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G G+   L P    +I   +  L  I+ D   P   V   YP+      K++ F +++  
Sbjct: 237 GLGVLHGLRPSLAPFIA--SGELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWLCE 294


>gi|149189272|ref|ZP_01867558.1| AphB/LysR family protein [Vibrio shilonii AK1]
 gi|148836831|gb|EDL53782.1| AphB/LysR family protein [Vibrio shilonii AK1]
          Length = 291

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 141/292 (48%), Gaps = 9/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +   S +  +L +T  ++ +     SGKL+I++  +L + ++     +F+  YPDI
Sbjct: 61  GERFYNECSPLLQRLTSTTEDIADECKGASGKLKISSPSNLTKRMMMPMFNDFMSKYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L + N    +     D   R+  P + SSLI RK+ T+     A P YL    EP  
Sbjct: 121 SLELTMSNHADQLDPTEWDVIFRVG-PQRDSSLIARKISTVKDILVAHPDYLSLNGEPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H L+    LI   +++     T    I        + NS   + + C  G GI 
Sbjct: 180 AEELSTHRLLKGAPLIKWQLKN-----TSGESIINNTKGRFEANSLNVVRRACSAGLGIT 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L+PD ++K+   N  LVR++ +       +Y  Y        K++ F +F+ 
Sbjct: 235 LMPDVMLKEYINNGELVRVLPEWSANPRDIYMLYNHKDHLPEKVRLFIDFVI 286


>gi|15598320|ref|NP_251814.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|218890675|ref|YP_002439539.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254241818|ref|ZP_04935140.1| hypothetical protein PA2G_02535 [Pseudomonas aeruginosa 2192]
 gi|9949236|gb|AAG06512.1|AE004736_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126195196|gb|EAZ59259.1| hypothetical protein PA2G_02535 [Pseudomonas aeruginosa 2192]
 gi|218770898|emb|CAW26663.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 303

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  SG F+ AA +  ++ S++S+ I+ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   LE  +      +  P G+LR+   +  G + L   + EFL  +P++ + +
Sbjct: 71  YERGVRILADLEEAER-CASENAAPRGRLRVNANVPFGHHFLLPLVPEFLAQHPEVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +DI     D A+R   P++SSSL+ RKL +  M    AP YL     P + Q L
Sbjct: 130 VLTDEVVDILEQRTDVAVRAG-PLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQAL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +    +  +       L      +  P     Q +   ++ +  V G G+A L  
Sbjct: 189 LGHNRLGANYVRTRSGWP---LRDAGEELVVPLSGNAQASDGEALRRLAVAGLGLARLAA 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKA 294
           + V+++     L+ ++E         V+  Y  +      +++AF +F+  + 
Sbjct: 246 FQVREDIAAGRLIPVLEAYNPGDLEEVHAVYVGQGGYLPLRVRAFLDFLAERV 298


>gi|299770610|ref|YP_003732636.1| transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700698|gb|ADI91263.1| transcriptional regulator [Acinetobacter sp. DR1]
          Length = 313

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+
Sbjct: 10  LHAMHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGA 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ +
Sbjct: 70  TYAESCRQVISMVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +        D+     D ++ L + +  S  + R++ TI     A+P YL+    P S +
Sbjct: 130 EYTTSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPE 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +    + P    D++ L              L  ++   ++       G+ALL
Sbjct: 190 DLKNHACLRL--VNPSITPDWHLLNAKGESYQIDTGGQLIADNPELLLDVVQQDMGVALL 247

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +   D   N  L  I+ +  +P   VY   P       K +A+ +++
Sbjct: 248 PMFSALDAVQNGRLCHILPEWRSPDIGVYTLLPSRHFIDAKTRAWLDWV 296


>gi|17544924|ref|NP_518326.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17427214|emb|CAD13733.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 300

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 128/290 (44%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR GSFT AA +L ++QS++S+ +SGLET + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLAFVTVAREGSFTRAAAKLGVTQSALSQTVSGLETRLKIRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +     + ++E+    L E   KP+G +RI     + +  L   L   L  YPDI+
Sbjct: 65  ERLLQAIGHRFDEIESELEALTELRDKPAGTVRITCGDQIIRTTLLPKLMPLLHEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L ++    DI  D  D  +R    +    +  R    + M   A+P Y      P + 
Sbjct: 125 LELDINYGFRDIVADRFDAGVRFSGTVDKDMIAVRIGPDMRMAVVASPAYFAKHPAPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I         ++ +       R +       L VN+   I    V G G+A 
Sbjct: 185 RDLVHHQCINIRFPTYGGLDVWE-FERRGRKLKIRVDGQLVVNTTPHIAAAAVGGLGVAY 243

Query: 244 LPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+   +   +   LVR++ED   P    +  YP   + +       + +
Sbjct: 244 LPEDEFWPHLEEGRLVRVLEDWCPPFSGYHLYYPSRRQPSPAFALVLDAL 293


>gi|167719002|ref|ZP_02402238.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei DM98]
          Length = 299

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 136/297 (45%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T+
Sbjct: 1   MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+     +   +E T+   + S V PSG LR      +G+ ++   L EFL  YP 
Sbjct: 61  DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRADMPGRIGRLIVAPALPEFLERYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P 
Sbjct: 121 ISVELGVTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H  + +       +  + W+   +      R + + VNS  + +  C+ G G 
Sbjct: 180 TPADLERHRPVNYASPSNGRVAPWEWVEGDEVKRIALR-ARVTVNSAEAYIACCLAGLGP 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V  +     LV ++ D       +   YP     + + + F  ++    R
Sbjct: 239 IQIPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLEALLR 295


>gi|162147153|ref|YP_001601614.1| transcriptional regulator protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209544209|ref|YP_002276438.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785730|emb|CAP55301.1| Transcriptional regulator protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531886|gb|ACI51823.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 295

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/294 (28%), Positives = 124/294 (42%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      L  F  VA +GSF+  + +   SQ +ISR I+ LE   G  LF R  R L +T
Sbjct: 1   MDL-LSALHSFVRVAATGSFSAVSRETGASQPTISRHIALLEAHYGATLFARTTRSLMMT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L     EV   LET +  L       SG +R+  T   G     G L E L  +P
Sbjct: 60  EDGRSLLPHAYEVLEILETAETALGRRRASVSGLVRLGVTTAFGLYT-TGRLGELLEQHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++LI+ +   D+  +  D A+R+ + I   SLI R+L T+   A A P YL     P
Sbjct: 119 DLSVELIMRDGFGDLVEEGLDLAVRVGE-IAEGSLIARRLGTVKRIAVATPAYLDRRGTP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  I +     +    F                  + NS  +++Q  + G G
Sbjct: 178 QHPRDLLNHPCIAYTYGGTRHDWHFE---GNGEESVVAASGPFRANSSEAVLQATLAGMG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           I LLP + V ++     LVR+  D   P    Y  +        + +   +F+ 
Sbjct: 235 IGLLPSFQVDEDVASGRLVRLFPDWTVPELPFYAVHTGPRTLPLRTRTVLDFLI 288


>gi|153837961|ref|ZP_01990628.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149748652|gb|EDM59511.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|328473367|gb|EGF44215.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 314

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 129/292 (44%), Gaps = 9/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  +FT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVIFSALIKHKNFTAAAKSLGVSVSHVSKQLSQLEESLGIKLVQRTTRSFTPTEAGKTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +V   + +  +E++    + +G +R+  +   G   +   ++E   LYP +Q+++
Sbjct: 68  YHHCEQVVQAVSSATLEMESQRDEVAGLVRLGLSQSFGTLHIIPAIQELRELYPQLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  +   + +     I ++L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMLAEGLDLWVTNNEHLP-EGYIAQRLTDCQFVVAASPDYLLKYDTPTEPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + +        +   W  T  +     ++S    V+   ++    + G GIA L 
Sbjct: 187 SLHNCLIYRS---WERDYTGWAFTKGQQELNVKVSGNYSVDLAEAVRDAAIAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            Y++ D      L++++ D   + S   Y  YP       K+ A  NFI  K
Sbjct: 244 TYLLGDEFRTGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVINFIKQK 295


>gi|59711928|ref|YP_204704.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59480029|gb|AAW85816.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 303

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 125/289 (43%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++ VF  + +  SFT AA+ L +S++ +S+QI  LE  +G++L  R  R  +LTE G  
Sbjct: 6   KQMIVFNALTQQQSFTKAAQLLDISRTQVSQQIQLLEERLGVQLVQRTTRSFSLTEAGQT 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +  ++   + EL  +     GKLR+        N +   L E    YP + I+
Sbjct: 66  FAVHCANIADEINEAENELLTNIDNLQGKLRVGIAQSFATNHILPYLSELHHAYPQLNIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  ID+  +  D  I +         + R L+  H    A+P YL     P    +
Sbjct: 126 ITLFDHKIDVIAEQLDLWIGVMDS-PPEGFVARHLIDCHFVLVASPLYLAKQGIPYHPYD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KHN +T+  +  +  +D       D  +        +++S  +I    + G+GI  + 
Sbjct: 185 LKKHNCLTY--ISRERKDDVWGFHKEDENLQIKVSGNYRIDSADAIRNATIAGNGIGYIA 242

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y++ D      LV+++ D     S  +Y  YP       K+  F  F+
Sbjct: 243 TYLLSDELQAGKLVQLLPDWELNQSMPLYAVYPRRKFLPKKVHVFMEFV 291


>gi|320324619|gb|EFW80696.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328991|gb|EFW84990.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330880707|gb|EGH14856.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 305

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFAKAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSTTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEASFSAAGAEPKGLLRVDLPVSLGRMVVIPALPEFARRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +++  +  DC +R    +   +L+ R L ++     A+  YL+    PL
Sbjct: 121 IRLEIGMSDRPVELIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLQRYGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H +I +            ++A     + +     + VNS    +  C  G G+
Sbjct: 180 NLPDLAQHQVIEYFSTSTGKRYGLEFMAD-GVEVDQALACSISVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V        LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVAAQLRSGILVEVLRLHRPPPLALTVLYPPHRQLSRRIRVFVDWLVE 292


>gi|170721548|ref|YP_001749236.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759551|gb|ACA72867.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 306

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 132/301 (43%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRV-----FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M+  +D L++     F + A   SFT AA +  ++ +++SR ++ LE  +G++LF R  R
Sbjct: 1   MTRHFDDLQLGSLELFCLAAERSSFTAAATEAGVTPAAVSRSVARLEERLGVRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + L+E G   +    +   +L   + ++      PSG+LRI+         L   L  F
Sbjct: 61  LMRLSEAGQAYYLQCRQALGQLVEAERQVSGGQAMPSGRLRISAPTPYAHYRLLPLLPHF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP +Q+ + + N+++D + ++ D AIR R+P   S L+ R+L    +   A P YL 
Sbjct: 121 RQRYPQVQVDVHVSNRNVDFAEEHFDLAIRGREP-ADSRLVVRRLENAELVVVATPAYLA 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P   ++L  H  I F          + +         E +     +  +L+     
Sbjct: 180 RMGTPHVPEDLAGHECIQFELASTGRRPPWRFRREGRELELETQGGFTCLGDFLATATLV 239

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G G+     + V+   D+  LV ++      S      YP+A     +++ F +F+F 
Sbjct: 240 RHGGGLMQAYRFTVQDALDSGELVEVLTAYGGTSQPFMLIYPQARHMPLRVRLFIDFLFA 299

Query: 293 K 293
           +
Sbjct: 300 E 300


>gi|91778169|ref|YP_553377.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690829|gb|ABE34027.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 297

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 141/295 (47%), Gaps = 7/295 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS + +D+L +F VVAR  SFT AA +L +SQ ++SR +  LE  +GI+L  R  R ++ 
Sbjct: 1   MSIEAYDQLAIFAVVARERSFTRAAARLGMSQPALSRAMRQLEERLGIRLLARTTRSVSA 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G  L RV +  + +++T    L +   KP+G+LRI         +LQ  L + L  +
Sbjct: 61  TEAGEHLLRVVAPRFEEIDTELALLSQFRDKPAGRLRITAGEHPAVTILQPALAKILPDH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI++++I+D    DI  +  D  +RL + I    +  R    + M    +P Y      
Sbjct: 121 PDIRVEVIVDYGLTDIVAEGYDAGVRLGEQIAKDMIAVRIGPEVRMAVVGSPDYFARHPR 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P + ++L +HN I     +P     F W         + R+   L  N+    +   + G
Sbjct: 181 PRTPRDLIRHNCIAI--RLPTYGGIFPWEFEKKGEELKVRVEGQLVFNNIAMRLDAALRG 238

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  +P+ +VK +     LVR++ D   P    +  YP   +++      R+ +
Sbjct: 239 LGLTYMPEDLVKAHVREGVLVRVLSDWCPPIPGYHLYYPSRRQSSPAFTVLRDAL 293


>gi|159185644|ref|NP_357405.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159140778|gb|AAK90190.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 297

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 135/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA +   S++ +S+ +  LE ++G  L  R  R  +LTE
Sbjct: 1   MDTLTRIRAFIDVVEAEGFSAAARKTGRSKALLSKYVRELEDDLGALLLNRTTRQFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  S++  +++     ++E +    GKLRI+         +  +L +F    P+
Sbjct: 61  AGHTYYRTASDILKEIDNLADLVREKNADLKGKLRISVPRTFIDADIGQSLIDFAKENPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++ D++ +D+  +  D AIR+ + ++ S LI RKL    ++A A   ++       
Sbjct: 121 LVLEIVADDRFVDLIEEGFDLAIRITR-LEDSGLIARKLSDFRVYAVATADFVAKHGPLD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+  +   I   D   +      +               ++VNS  + ++    G GI
Sbjct: 180 GPQDFARVPFII--DTNTRFHNTVRYFEPDGGSNSVAISGPIEVNSPQATLRAARAGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A++PD+I +    +  LV + +D I+    +Y  YP       K+++F +++
Sbjct: 238 AMVPDFIARPHIQSGELVTLFDDYISKDRGIYAVYPHRRYLPAKVRSFVDYL 289


>gi|238782715|ref|ZP_04626745.1| Transcriptional regulator, LysR family [Yersinia bercovieri ATCC
           43970]
 gi|238716375|gb|EEQ08357.1| Transcriptional regulator, LysR family [Yersinia bercovieri ATCC
           43970]
          Length = 302

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 129/287 (44%), Gaps = 10/287 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA  GSFT AAE   L +SS+S++IS LE  +GI+L  R  R L LT  G 
Sbjct: 5   LQDMALFARVAECGSFTRAAEMAGLPKSSVSKRISQLEQGLGIRLINRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+ H  E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ +
Sbjct: 65  RYLVHCQEMLHAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLATDFQRQYPDVLL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++ +  +D+  +  D A+R  KP Q SSLI R+L     +  AAP YL          
Sbjct: 125 EVLVSDTMVDLVEEGFDVALRTGKP-QDSSLIGRRLGYAPRYLLAAPDYLAQHPPLSHPS 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ I         +           P+          ++ L   +  + G GI LL
Sbjct: 184 QLAMHHCIAHRAWQALILRREGEFYRWQVPVQHV------TDNLLYARECALAGGGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P ++ +D   +  L+ ++         +Y  YP    N+  L  F +
Sbjct: 238 PAFLSRDVVASRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFID 284


>gi|270262555|ref|ZP_06190826.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043239|gb|EFA16332.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 306

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + +KL +R  R L +T 
Sbjct: 1   MDRFDAMRAFARVVEAGSFTKAAQTLHISKTTVTQLIQQLEARLRVKLLHRTTRKLGVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAVYYERVIRLLADMEDAENSLSSAAITPRGRLRVDVPSPLARLILVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ  + + ++ +D+  D  DC +R    I   SLI R +  + +  Y AP Y++    P 
Sbjct: 121 IQFDMGVSDRVVDLIGDNVDCVLR-GGEINDLSLIARHVGDLQIGVYVAPSYVERLGAPA 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL+   H ++ F       ++        +  I       L V+   + ++  + G 
Sbjct: 180 HPRELENTDHRIVGFMSSRTGKIDPLVLRRESEH-IEITGNYVLAVDDGNAYLEAGLAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+   +    +L+ + E        +Y  +P       KL+ F ++I  
Sbjct: 239 GVIALPVYMATAHQACGSLIPLFEHWRINPMPLYLAFPPNRHVNAKLRVFIDWIVE 294


>gi|259909882|ref|YP_002650238.1| Transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96]
 gi|224965504|emb|CAX57036.1| Transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96]
 gi|283479966|emb|CAY75882.1| probable RuBisCO transcriptional regulator [Erwinia pyrifoliae DSM
           12163]
          Length = 302

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 133/295 (45%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS   D+LR    F     SGSFT AA +LH++ S++S+ I+ LE  +G +LF R  R L
Sbjct: 1   MSVSEDRLRGIAPFVASVESGSFTAAAGRLHITSSAVSKSIARLEARLGSRLFERTTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G   +   + V  +L   +  L      P G+LR+A     G+  +   L +F  
Sbjct: 61  LLTDAGQAFYDTCARVLSELAEAESVLAAQRSIPVGRLRVAVPHTFGRLHVMPMLNDFCR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKN 176
            +P++Q+ L   ++ +D+  +  D A+R+  P     SL  R L +  +   AAP YL  
Sbjct: 121 QHPEMQLNLSFSDRFVDLFEEGVDMAVRIGGPGNYPPSLGVRYLGSERLIFCAAPDYLAQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P S+ +L++   I +   I      ++  +   R         + +    +     V
Sbjct: 181 HGTPQSLAQLEQRQAIVYA-RIDGSTSPWHVASPDGRITTRTVAHRMALADGEAQRSAVV 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            G G+A +  +++++      LV ++  +  P   +Y  +P   +   K+ A  N
Sbjct: 240 AGLGVAQMATWLMEEQLARGELVPLLPQLAVPGLPLYMVWPRRKQLMPKVGALLN 294


>gi|327188228|gb|EGE55448.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 306

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V + G F+ AA  L ++ S++S+ I+ LE  +G +L  R  R LTLTE+G   
Sbjct: 11  EMEVFARVVQDGGFSAAARNLDITPSAVSKLIARLEARLGTRLLVRTTRALTLTEEGEAY 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H    ++  +L     +   +     G+LRI TTI  G   +   + +F+   PD+ + L
Sbjct: 71  HHAALKILQELN--DADQAAAGGAVRGRLRINTTIPFGTMFVAPVIPDFIARNPDLIVDL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D AIR+   +  S LI RKL        A+  YL  C  P++  +L
Sbjct: 129 SFTDGIVDLVAEKTDVAIRMGD-LPDSGLIARKLGQSRRVVCASADYLVRCGFPVNPADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + H+ +TF     +    F       + + +P    + VN+  ++ Q  + G+GIA +  
Sbjct: 188 EHHDCLTFNFRRARPSWPFR---CGGQDVAQPVKGSIVVNNGETMKQMALAGAGIARVGL 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIF 291
           + V D      LV ++E+        V+  Y        +++ F  ++ 
Sbjct: 245 FHVADEIATGRLVPLLEEYNPGDLELVHAVYVGGGPLPHRVRDFIEYMV 293


>gi|251788572|ref|YP_003003293.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537193|gb|ACT05814.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 306

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 128/295 (43%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ + +F  V RSGSF  AA  L +  +++SR+I  LE ++  +L  R  R LTLT  
Sbjct: 2   LDFNDVALFVQVVRSGSFAEAARSLGMPPNTVSRRIQQLEEQLDTRLLQRSTRKLTLTSV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   +     L     EL   +++PSG +R+A   D         + +FL +YP  
Sbjct: 62  GQTFYDRCAGAVDGLTDAGQELLTGNLEPSGLIRVAAAADFFDFFSVEWVADFLAMYPRT 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPL 181
           +   +L +   D+  D  D AIR  + +  S  I R+L+        A+P Y+     P 
Sbjct: 122 RFDFVLSDARADLIGDRVDVAIRAGR-LDDSGYISRQLLRAGYDGLVASPAYIAKHGMPN 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++Q+L K + ++FG   P     +               S    N+  ++ +  + G GI
Sbjct: 181 TLQDLAKLDCVSFGH--PSGFTTWRLAGASGVEEDIQMSSRFSGNTIQALRKATLAGLGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ALLP  I   +     LV ++       + ++  YP        + AF  F+  K
Sbjct: 239 ALLPTVITTRDLHAGRLVPVLPQYKRQGYGLHVLYPSRRHLPLAVSAFIAFLVEK 293


>gi|91978809|ref|YP_571468.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB5]
 gi|91685265|gb|ABE41567.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB5]
          Length = 311

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 135/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF+ AA +L LS+ ++S+ ++ LE  +G +LF R +R L LT+ G
Sbjct: 13  DFEALAIFAKVVELRSFSAAAAELTLSKPTVSKAVTRLEARLGARLFNRTSRRLALTDAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +++    E  + E    S  P G +R+A  +  G  ++   L +FL  YP++ 
Sbjct: 73  HRLAERATQLLADGEAAESEALAQSAAPRGLVRLAVPMTFGVRVIAPLLPDFLAAYPEVS 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D  +R+   +  SSL+ R+L  +  +  AA  YL     P   
Sbjct: 133 IDLHLSDAMVDLIGEGFDAGVRIAS-LPDSSLVARRLCAMPRYTVAAKAYLARYGRPTHP 191

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H    FG         +++               L+VN+  +++   V G GIA 
Sbjct: 192 MHLAEHRC--FGYAYRTTPNVWSYTNARGEQAAVRPSGPLRVNNGEAVLPAVVAGLGIAD 249

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP++IV +     ++  I+E       +V+   P       +++    F+  + 
Sbjct: 250 LPEFIVGEAIAAGDVEVILEGWHQRETSVHLVMPPGGPRPARVEVLAAFLAERL 303


>gi|162149248|ref|YP_001603709.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545016|ref|YP_002277245.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787825|emb|CAP57423.1| putative transcriptional regulator LysR [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532693|gb|ACI52630.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 301

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 142/295 (48%), Gaps = 8/295 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V   GSF+ AA QL ++ S++S+ I+ LE+ +G++L  R  R L+L+ +G   
Sbjct: 7   EMQVFVRVVECGSFSEAARQLFMTPSTVSKLIARLESRLGVRLIERSTRRLSLSAEGQLY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  +L+  +  + +     SG +R++ ++  G   L+  L  F    P++ + L
Sbjct: 67  YERGQALLAELDDMEQTVSQGMRHTSGIVRVSASVAFGTLGLEPLLPAFWSACPNVIVDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ID+ +D  D A R+ K +  S+L  +++ +      A+P YL     P ++ +L
Sbjct: 127 SLSDEIIDLFLDRTDIAFRVGK-LADSTLTTQRIGSARRKIVASPAYLARHGTPDTVDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + F       +     L    R +       L  N+  ++ +  V G G+A L +
Sbjct: 186 ARHNCLGFNFRRAAPVWP---LREGGRIVDRMVHGTLLANNGETVRRLAVAGMGLARLGN 242

Query: 247 YIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           Y V+++     LV ++    I     ++  Y    +   +++ F +F+  K R +
Sbjct: 243 YHVREDIAAGRLVEVLAQAGIHDEEDIHAIYSGTQRMPQRMRVFLDFVIPKLRAF 297


>gi|167033289|ref|YP_001668520.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859777|gb|ABY98184.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 306

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 133/302 (44%), Gaps = 9/302 (2%)

Query: 1   MSFDWDKLRV-----FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L++     F + A SGSFT AA    ++ +++SR ++ LE  +G +LF R  R
Sbjct: 1   MPRHFDDLQLGSLELFCLAADSGSFTAAAALAGVTPAAVSRNVARLEERLGARLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + L+  G   +    +   +L   + ++    ++PSG LRI+       + L   L  F
Sbjct: 61  QMRLSAAGHAYYLQCRQALGQLVEAERQVTGGQIEPSGLLRISAPTPYAHHRLLPLLPRF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP +++ + + N+++D + +  D AIR R+P   S L+ R+L    +   A P YL 
Sbjct: 121 RQRYPQVRVDVHVSNRNVDFAEEPFDLAIRGREP-ADSRLVARRLEDAELVVVATPGYLA 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P    +L  H  I F          + +     +   E + +   +  +L+     
Sbjct: 180 GAGMPQVPHDLQHHECIQFEMPSSGRRPPWTFRQDGRQVEVETQGALTCLGDFLATATLV 239

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G G+     + V+D   +  LV ++      S      YP+A     +++ F +F+F 
Sbjct: 240 RHGGGLMQAYRFTVQDALVSGELVEVLTAFGGTSRPFMLIYPQARHMPLRVRVFIDFLFA 299

Query: 293 KA 294
           +A
Sbjct: 300 EA 301


>gi|107026116|ref|YP_623627.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|105895490|gb|ABF78654.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
          Length = 303

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 129/295 (43%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA  GSFT AAEQL L + ++S  +  L   + I+L  R  R + LT 
Sbjct: 1   MDHLQAMRTFARVAHLGSFTKAAEQLQLPRPTVSNAVQYLGKHLKIRLLQRTTRRVALTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   L+  +   +++   P G +R+        N +   L +F   YPD
Sbjct: 61  EGATYYERCVRLLADLDDVETLFEDAGASPRGVIRVDLPERFALNQVIPALPDFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P 
Sbjct: 121 LRVVISTTDRFVDLVADGIDCAVRVG-VLSDTSLVARRVGEMAQINCASPAYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S  EL  H  + +         D+ +       +   ++ S + VNS  + +  C+ G G
Sbjct: 180 SPDELPDHVAVGYFSSRTGRELDWEYADMDSGELHAVKMHSVVSVNSSQAYLACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P   +     + +LV ++ +       V   +P       +++ F +++  
Sbjct: 240 LIQAPRDGLAPLLADGSLVEVLPEWNAAPLPVSVVFPTGRHLAPRVRIFVDWLAE 294


>gi|322831699|ref|YP_004211726.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166900|gb|ADW72599.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 297

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F +VAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLMVARERSFTKAAGKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++          LE     L + +   SG +R++      +NL+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIADLEQELESLVQLNGTASGNIRLSAGEHAARNLVWPKLKPFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  ++I     D  IRL + +    +  R    + M    AP Y      P + 
Sbjct: 125 LELVVDNGFVNIVEGRFDAGIRLGESVDKDMIAVRIGPDMRMAVVGAPSYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W    +      R+   +  N     +   + G GIA
Sbjct: 185 HELQNHRCINM--RLPTAGGLYHWEFEREGKPLRVRVEGQVTFNLQAERIDAALSGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V D   +  L++I++D        Y  YP   ++        + +
Sbjct: 243 CIPEDRVLDYIKSGELIQILQDWCPSFPGYYLYYPSRKQHPPAFALMIDAL 293


>gi|257093324|ref|YP_003166965.1| LysR family transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045848|gb|ACV35036.1| transcriptional regulator, LysR family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 295

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  VA  GSF+  A QL +++S ++RQI+ LE  +G+KL  R  R L LT 
Sbjct: 1   MDRLEAMHLFMRVAELGSFSAVALQLGVARSVVTRQIAALENHLGVKLMARSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        + + ++T + ++ E  + P G +RI+  +  G   L   L +F   +P+
Sbjct: 61  AGAAYLEKCRVILNLVDTAEADVAEERLTPRGNIRISLPLSYGIKRLAPLLLDFSQRHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + +   ++ I++  +  D AIR+ + +     + RK+ +  +   AAP YL     P 
Sbjct: 121 VSLDMDYSDRRINLIEEGIDLAIRITRRLDPGD-VARKIGSSRLLVVAAPDYLARHGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              EL  H  + +           +W   VD  +    + S +  N+   + +   LG G
Sbjct: 180 HPAELAHHECLGYS----GSGAAQSWHFLVDGQLQTYLLRSRINANNGDVLSEGAALGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I L PD+IV D      + +I+ D   P   +Y   P     + +++   +F+   A
Sbjct: 236 ITLQPDFIVADLLAVGRVEQILADFPIPELGIYAMLPGNRHVSHRVRVLMDFLAANA 292


>gi|56551367|ref|YP_162206.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761013|ref|ZP_04759102.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|56542941|gb|AAV89095.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374632|gb|EER64093.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 319

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA S SF+ AA  L LS+ ++S+ IS LE  +G  L +R +R L+LTE G
Sbjct: 6   DFEAWAIFAKVAESNSFSKAALALGLSKGTVSKAISRLEERMGTSLLHRTSRHLSLTESG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  + E+ E +  P G +RIA+ I  G   L   L EFL  YP + 
Sbjct: 66  RVALTRATHLLEEGEAIEAEVSEDANNPYGVVRIASPISFGIQALGPILPEFLAEYPRVG 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D A+R+   +  SSL  R+L +I     A+  YL     P   
Sbjct: 126 IDLHLSDSRVDVIAEGFDIALRMGD-LPDSSLRARRLFSIRRPVVASRAYLDRHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H +I +  +    +  F+     +  +       + V++    M   + G GIA 
Sbjct: 185 RELSQHEVIIYSHIEHPHIWRFSHPE--EGRVEVKVDGRVHVDNGDVAMGPLLSGIGIAC 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            P++ +     +  L  +  +   P + ++   P       +++A   F+  + +
Sbjct: 243 QPEFFIWQALRDGVLEELFPEWTIPPYGMFLLTPPGRARPARVRALLGFLAQRFQ 297


>gi|224823543|ref|ZP_03696652.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603998|gb|EEG10172.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 298

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 130/294 (44%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +S LE ++   L  R  R L LT
Sbjct: 1   MKSTTEELLAFVRVVDAGSITAAAEQLGQTTSGVSRALSRLEGKLATTLLNRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   ++  + ++     +PSG+LR+        + +   +  F   YP
Sbjct: 61  EEGRLFLSHARGILGAIDEAEEQMAIRRERPSGRLRVNAASPFMLHAVVPLVGAFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L   ++ ID+     D AIR+   +Q SSL  R L    +   AAP YL+    P
Sbjct: 121 EIELELNTSDEIIDLLEQRTDVAIRIG-TLQDSSLHARPLGQFRLRLVAAPAYLERHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + EL +H LI F            W        G      L  +S  ++ Q  + G G
Sbjct: 180 QQVDELARHALIGFSAPSSLN----TWPLRRQESSGYVITPALSASSGETVRQLALAGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
           IA L D++  ++     LV+++ +    ++  ++  Y        ++  F +F+
Sbjct: 236 IACLSDFMTGEDRRRGALVQVLAEATIETWQAIHAVYYRNTGLAARIGCFLDFL 289


>gi|170699272|ref|ZP_02890322.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|172064888|ref|YP_001815600.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|170135826|gb|EDT04104.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|171997130|gb|ACB68047.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 305

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 133/287 (46%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   +
Sbjct: 7   MRVFTRIVETGSFTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRISLTEDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  + ++   P G+L++     + + ++   L  FL  +P+I I+L 
Sbjct: 67  ERCVGVLREIDDMEAAVSQARNVPRGRLKVNLPPAMAKQIMVPALPGFLAAHPNISIELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S +I +++ ++     AAP YL  C  P ++ EL 
Sbjct: 127 VTDRQIDLVGEGVDCVVRIGA-LDDSGMIAKRIGSLTTCTCAAPAYLDRCGAPETVDELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  +    +         W   VD      ++   + VN   + ++  V G G+     
Sbjct: 186 QH--VAISHISADTGRPRPWDYVVDGETRIVQMCGTVAVNDADTYIECGVAGIGLIKTSL 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+V+    +  L  ++ D   P   +   YP       KLK F +++
Sbjct: 244 YLVEPYLKSGRLREVLTDFNAPPRPISILYPPNRHTPVKLKIFVDWL 290


>gi|186471394|ref|YP_001862712.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197703|gb|ACC75666.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 338

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 133/290 (45%), Gaps = 9/290 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  GSF  A ++L + +SS+SR +  LE ++  +LF R  R  +LT +G       
Sbjct: 31  FIAVANEGSFARAGDRLGIGRSSVSRNVQKLEAQLDTRLFLRTTRSTSLTREGELFFENC 90

Query: 71  SEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                ++     E++E  S  P G+LRI +T   G+ ++   L+ F   YPDI ++L+L+
Sbjct: 91  QAGVERIVQALEEMRELRSGPPRGRLRIYSTPGFGRKIVAPLLRGFHAQYPDIALELLLN 150

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D + D  D + R  + ++ S ++ R+L+ + M   AAP Y++    P  + EL  H
Sbjct: 151 DRPADFTADRIDVSFREGR-MEDSEIVARQLIPMQMIVCAAPSYVQAHGLPRHVDELAHH 209

Query: 190 NLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             I F     +  E   W   VD  P+     +    N    I+Q  + G G+A LP Y 
Sbjct: 210 GCINFRTASGRLKE---WEFRVDGLPLRHHPHASHTFNDPDLILQSVLDGQGLAQLPGYQ 266

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V D      LV  +          Y CY        +++ F +++    R
Sbjct: 267 VCDLLGEGRLVSCLTQYAPDDSGHYICYLSRKHLPARIRVFVDYMTEHTR 316


>gi|294140060|ref|YP_003556038.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293326529|dbj|BAJ01260.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 302

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 147/296 (49%), Gaps = 12/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA + SF  AA +L+++ SS+SRQI+ LE+++ + LF R  R + L+  G  L+
Sbjct: 8   LRSFMAVAEANSFAKAARKLNMANSSVSRQIAQLESQLNVSLFTRTTRHVQLSPAGEILY 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  ++E    EL   +V P G L+++      Q  L   L EFL LYPD+++ + 
Sbjct: 68  GRASGLIMEMENLAAELSAENVTPHGTLKVSVPWWFSQLHLAPLLPEFLALYPDLRVVMQ 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+    +  +  D A+RL + ++ S+LI R+L        A+P YL    E +  ++L 
Sbjct: 128 CDDGMTKLVEEGFDVAVRLSR-LKDSNLIARRLGPHSFAMAASPEYLARHAEVIKPEDLR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H +++F    P        L    +    P + S L  N+   + Q  + G+GI + P 
Sbjct: 187 EHAMLSFNFSTPYHSWT---LRKQGKSYRIPLKDSVLTSNNADILKQCALDGAGIIIQPV 243

Query: 247 YIVK---DNPNLVRIMEDVITPS----FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + ++   ++  L++++ D    S      ++  Y +  K   ++K F +F+  + +
Sbjct: 244 WGIQAEIESGALIQLLPDFEVTSTTFDNGIFAVYSKESKAVNRVKVFVDFLTERLK 299


>gi|194364706|ref|YP_002027316.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347510|gb|ACF50633.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 291

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 127/292 (43%), Gaps = 10/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               ++ F  VA  GSFT AAEQL +S   + + I  LE  +G  L  R+ R   LTE G
Sbjct: 3   TLRCMQAFVAVAERGSFTGAAEQLQVSAVMVGKYIQQLEAHLGTALLQRNTRRQRLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S       +V  +++  + ++    V+P G LR++     G  +L   L   L   P + 
Sbjct: 63  SAYLAGCRQVLEQVQQAEADVAGLQVQPRGLLRVSAPTTWGSCVLAPVLSGLLREQPLLN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L N+ +D+  D  D AIR+  P+ S  ++ R L    M   AAP YL+    P + 
Sbjct: 123 IELDLSNRRVDLIEDGFDVAIRVG-PLPSQEVVARPLPPYAMSLCAAPSYLRRRGTPRTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ ++                 VD        + L  N  +++ +  V G+G+ L
Sbjct: 182 EDLAGHDCLSHLAWRGGHGWQLANGEQVDWE------ARLTCNDGVALREAAVAGTGLVL 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            P  ++        L  ++ D +     ++  Y    +   +L+ F +F+  
Sbjct: 236 QPTALLAGEIAAGRLKPLLRDYLPEPRPMHLIYLPDRRPRPRLQCFVDFVMA 287


>gi|241207292|ref|YP_002978388.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861182|gb|ACS58849.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 296

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 9/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+ + L +F     SGSFT AA  L + +S++S++++ LE  +G++L  R +R   LTE 
Sbjct: 4   FNLNDLHLFVQAVDSGSFTAAARHLGIPKSTVSKRVAELERRLGVRLIQRTSRSFALTEL 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +       + E  +  ++    +P+G +R+  ++   Q  L  +L      YP +
Sbjct: 64  GREFFQHAQASIIEAEMAEGIVRRHLAEPAGSVRLTASVPTAQFTLTEHLPALAARYPKL 123

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ + + ++ +DI  +  D A+R  R P+  S+L+QRKL +      A+P Y+    EP 
Sbjct: 124 RLSVHVTDRFVDIVQEGFDIALRSHRGPLPDSALVQRKLASHPFFILASPDYVGAHGEPR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H  I          ED   L +          S +  +    +M+  + G GI
Sbjct: 184 RPEELAEHATIM-----TSLTEDQWRLYSGGDEALVRLHSVMAADEPYVLMEMAMSGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP  + +    +  LVR++ +    S       P        ++A  +F+  + 
Sbjct: 239 TCLPTSVCRKALADGRLVRVLPEWTAGSIETTILMPHRRGQLPAVRAVVDFLAERL 294


>gi|161502022|ref|YP_001569134.1| hypothetical protein SARI_00039 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863369|gb|ABX19992.1| hypothetical protein SARI_00039 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 376

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 75  LNLQRMSLFVAVVDSGSFTAAAAVSGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 134

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 135 GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDL 194

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   A+P +L       S
Sbjct: 195 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRATLISRFTILPVASPQWLARYPVS-S 252

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 253 LESLAQAEWIIHERLSTPLRWTLTDNDGQHSRLEISKAGRISVDSARSLMAFALAGSGVA 312

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP+++VK   ++  LV ++ D   P   +Y  YP+    + K++AF +F+  +
Sbjct: 313 LLPEWLVKTALEDGALVHVLPDYHFPRQGIYAVYPDTRHVSTKVRAFIDFLRSQ 366


>gi|157376372|ref|YP_001474972.1| transcriptional regulator [Shewanella sediminis HAW-EB3]
 gi|157318746|gb|ABV37844.1| transcriptional regulator [Shewanella sediminis HAW-EB3]
          Length = 302

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 148/298 (49%), Gaps = 14/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D ++VF+ V  SGSF+ AA+ L+++ SS++R I  LE  +   LF R  R L LTE+G 
Sbjct: 2   LDLIKVFHQVVESGSFSQAAQALNMAPSSVARNIDNLEALIQTTLFKRSTRQLILTEEGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H  ++++    +    E++ ++ +P G LRI+     G   L   + EFL  YP++QI
Sbjct: 62  YFHLQSAKLVQDADKLLSEMKGTNPEPEGVLRISVFESFGNIYLAPLIPEFLERYPNVQI 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ LDNK +D++ +  D AIR+  P Q S L  RKL+T +    A+P Y+         +
Sbjct: 122 EIELDNKVVDLNSENIDLAIRIGTP-QDSRLKARKLLTNYTSLVASPDYIHTHPRIGKPE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +HN +    LI    +  +W  +  +   +  ++  L       ++   + GSG+ L
Sbjct: 181 DLQQHNCL----LISHERQRNHWYFSRGKVEKKVSVTGNLISKGGSPLLSAALQGSGVLL 236

Query: 244 LPDYIVK---DNPNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L D++V     N  L+ I+ D         S  ++  Y         ++AF +F+  +
Sbjct: 237 LSDWMVTPYIANKQLIEILPDWAATHGAQGSGEIFAIYKGTQYPKPHIRAFLDFLIEQ 294


>gi|116252887|ref|YP_768725.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257535|emb|CAK08632.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 299

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 139/294 (47%), Gaps = 5/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + +F  V  +GSF    + + LS+S+  + +  LE  +G +L  R  R L+LT++G
Sbjct: 5   NLNDILIFMAVVDAGSFIAGGQAIGLSRSAAGKAVIRLEDRLGARLLNRTTRTLSLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++   ++  +  +   +  P G LR+A     G+ ++   L+++L  +PDIQ
Sbjct: 65  RMFYERGLQILVSVDEAEASVVGQNSTPRGVLRLAVPDAFGRLVVLPLLEKYLQAWPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++  DI  +  D AIR+      + L+ R + T      A+P Y     EP  I
Sbjct: 125 VEVSFTDRPADIVEEGFDLAIRVGATATDNRLVSRVIATYKTRLCASPSYFAERGEPRDI 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ + F        + + +       I     S L+++S  +I    + G GIAL
Sbjct: 185 DDLAVHDCLIFAS--RNQRQGWRFRGEGGSWIKAQGRSRLRLDSAEAIRDAALAGLGIAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPD++V D+     L +I+ D+ T +  +   YP+      +++ F + I  + 
Sbjct: 243 LPDFLVADDLAAGRLRQILADLETDNAKIVTLYPDKRVLEPRVRRFIDLIVEEL 296


>gi|84393129|ref|ZP_00991894.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84376286|gb|EAP93169.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 294

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 131/300 (43%), Gaps = 13/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +  F  VA    F+ AA+QL  S S +SRQ+S LE  VG+ L  R  R ++LTE
Sbjct: 1   MDSFEGINEFVAVAECHGFSAAAKQLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   ++   L+    ++     + SG LR++      +N +   L EF   +P+
Sbjct: 61  SGHTYYQQCRDLVIGLQQANEQVTSQQTQLSGTLRVSAAGAFAENHVAAALMEFAKDHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  + K ++      D AIR  + +  S L+ RKLV   M A A+  Y++    P 
Sbjct: 121 LTIEMNFNTKMVNFIEGGIDFAIRYGR-LDDSGLVARKLVDRPMAAAASQDYIEQFGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             ++L  H+ I           D        +P+   R+    + N+  ++++ C  G G
Sbjct: 180 HPEQLKMHSCII-------ANSDQWLFEKEGKPLNAVRVHGRWRSNNSSAVLKACEEGLG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  LP         N  LV ++E+      + +  Y        + +   +F+     DW
Sbjct: 233 VVYLPKSSFNGGLSNGKLVPVLEEYWGAGTSSWVVYQNRRFLPQRARLAIDFLVAYFSDW 292


>gi|270263131|ref|ZP_06191401.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042819|gb|EFA15913.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 308

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 148/299 (49%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + + VF     +GSF  AA +LHLS+S++ + I+ LE  + ++LF+R  R L+LT
Sbjct: 1   MTDRLNGISVFVTAVGAGSFALAANRLHLSRSAVGKTIARLEQRLSVRLFHRTTRSLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+  +        ++ T +  L+    + SG+LR+   +  G+  +   L E    +P
Sbjct: 61  DDGALFYERCLRALEEIRTAETLLESGKREVSGRLRVTMPVLFGRICIAPLLTELAREHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +++ +D+  D  D AIR  +   SS L+ R+L    M   AAP YL+   EP
Sbjct: 121 GLELELSFNDRVVDLIEDGFDLAIRNGELGNSSGLVARRLGNHRMALCAAPAYLQRRGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLG 238
            +I++L +H+ + +     +     NWL      +    +  + LQ++   +I+   V G
Sbjct: 181 QNIEQLAQHDAVAYV----RAGVVRNWLIPEADGVTREMMPGTRLQMDDLQAIVDAAVAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIA LP ++V+       LVR+M D     F  +  +P+      K++   + +  K 
Sbjct: 237 FGIAWLPCWLVRGQLIKGELVRVMRDRPGLFFDAHAVWPQTPHLPLKVRLAVDLLASKL 295


>gi|298370395|ref|ZP_06981711.1| transcriptional regulator, LysR family [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298281855|gb|EFI23344.1| transcriptional regulator, LysR family [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 298

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 88/293 (30%), Positives = 142/293 (48%), Gaps = 14/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AAEQL +S +  S+ +S LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAAEQLDISTAMASKHVSHLENSIKAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +    NL+   L E+   YP++ + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGNLISNWLVEYRERYPEVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ K + S SLI + L  I     A+P YL     P + +E  
Sbjct: 127 LDNRHVDLIAEGFDLALRVAKTL-SPSLIIKPLAKIQFVLLASPDYLAKHGTPQTPEEAM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
            H  I       + ME         R  GE  I      +Q ++ L I +    G+GIA 
Sbjct: 186 HHPAILPSYTDQRNME------ITHRETGEKSILTLNPVIQCDNTLMIRELIRTGAGIAY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P + V+ +     L R++ D    +  +   Y +    + K+++F +F+  K
Sbjct: 240 QPLWSVRQDLAEGRLARLLPDYRVLTVQLNAVYVDRAFLSAKVRSFIDFLNEK 292


>gi|224826157|ref|ZP_03699260.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224601794|gb|EEG07974.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 301

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +L+ F +VA  GSF  AA+   ++   + R++  LE  +G+KL +R  RGL LT+
Sbjct: 1   MDRYTELKSFVLVAEKGSFAAAAQAERVTPVVMGRRLDSLEDRLGVKLMHRSTRGLHLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++    +  +  L        G L ++     G+  +    + F  LYPD
Sbjct: 61  LGEQFLDQARQLLKDFDDIESSLLAGRNLVRGHLVVSAPAAFGRRHVAPLGQTFQTLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++   L +  +D+  +  D AIR+ + +   + +  KL +        P Y      P 
Sbjct: 121 LKLSFNLTDSVVDLVREGYDMAIRIGE-VTDPNYVAVKLASNRRVVCGTPAYFAQHGVPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+++L +HN + F     +  +   W    D  +   ++   L  N    +  +   G G
Sbjct: 180 SLEDLAQHNCLAFNL---QGGQPRGWSFLKDGRLVAVKVGGNLDCNDGELLYNWVKQGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I     + ++       LV +++    P++ +   YP+      K++ F +++
Sbjct: 237 IGWRSTWEIEGELKRGELVTVLDAFAVPAYDIQAVYPQQRHLPAKVRFFIDYL 289


>gi|120611211|ref|YP_970889.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120589675|gb|ABM33115.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 311

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR++S LE ++G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVVERGGFAAAGRALGIPKSRLSRRVSELEAQLGVRLLQRTTRKLSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    V    +     + E   +P G +R++  + L Q +L   +  FL  +P ++
Sbjct: 63  ESYLRHCQAVREAAQAASDAVAEVQTEPRGTVRVSCPVTLAQTVLGELMPIFLERHPQVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +D+  +  D A+R+R  +  S S++ ++L  +     A+P  L     P +
Sbjct: 123 VEMQVTNRAVDLVEEGVDVALRVRPNLDDSGSMVVKRLDDVLQVLVASPALLARQGTPAT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL + +  +     P        +    R            +  L++    + G+G+ 
Sbjct: 183 LAELSRLD--SMAMSAPDGRTALRLVGPDGREEAVQLTPRYVADDLLTLKFAALAGTGMC 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY+ +       LVRI+    TP   V+  +P        ++ F +F+
Sbjct: 241 WLPDYMCQAELGEGRLVRILPGWSTPRGVVHAVFPSRRGLAPAVRRFLDFL 291


>gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151280992|gb|ABR89402.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 300

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 137/298 (45%), Gaps = 10/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  SGS + AA+QL LS+  +SR ++ LE   G +L +R  R L+LT 
Sbjct: 1   MDRLSAMQVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+++     ++       +  +      P G LRI  +   GQ+ L   + +++ LYP 
Sbjct: 61  AGAEMLPRCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + +++ ++ +++  +  D AIR+ K +   +LI R+L        AAP YL    +P 
Sbjct: 121 VTVDMLVLDRVVNLVEERIDLAIRISKEL-DPNLIARRLTVCRSVVCAAPAYLHEHGKPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  HN +T        + + + L     P+       +  N   S++   + G+GI
Sbjct: 180 QAEQLVLHNCLTHSYYGSVWLLERDKL-----PVNVAVKGNISANDASSLLPAALAGAGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP ++      +  L+ ++ +     F ++  Y         L+   +F+  +  D
Sbjct: 235 AMLPTFLAAPYIRSGQLLPLLPEYHPQEFGLFGVYASRKHMPATLRTMLDFLAARFTD 292


>gi|311105758|ref|YP_003978611.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760447|gb|ADP15896.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           75 [Achromobacter xylosoxidans A8]
          Length = 325

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 7/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VA + SFT AA +L LS+S+I + I+ LE  +G +L +R  R ++L+++GS  
Sbjct: 24  DLLAFVRVADTQSFTAAAAKLGLSRSAIGKCIARLELGLGARLLHRSTRSVSLSDEGSVF 83

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  +++     +      P G+LRI   + LG+  +   L+++L  +P+++  +
Sbjct: 84  YEHAQRILSEVDNATDAMASRKQAPRGRLRIDLPVSLGRLHIMPLLRDYLRDWPEVEADV 143

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID+  D  D AIR+      S L++R L    + A AAP YL     P +  +L
Sbjct: 144 SFSDDYIDLVRDGVDVAIRIGGE-TDSRLVRRVLAPHRLIACAAPGYLDRHGAPATPDDL 202

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + +          F   A   +         +++ +  ++    + G GIA L  
Sbjct: 203 ASHQTLAYTHAGALVPWRF---AVNGQERAVHVAGRMRLGNTEALRDAALAGEGIAQLGA 259

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++V ++     L  ++E V      V   YP       K++   + I  K
Sbjct: 260 FLVGEDLRAGRLTPVLESVAPAGAPVCAVYPHRRHLAPKVRVLIDAIASK 309


>gi|83746103|ref|ZP_00943158.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207742398|ref|YP_002258790.1| hypothetical protein RSIPO_00585 [Ralstonia solanacearum IPO1609]
 gi|83727286|gb|EAP74409.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206593788|emb|CAQ60715.1| hypothetical protein RSIPO_00585 [Ralstonia solanacearum IPO1609]
          Length = 305

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAAARLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S     +E       E    P GK+R+    D+G+ L+   +  F+  YPDI
Sbjct: 61  GQSLYQVASHALEDIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMREYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQRQGVPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H+ + F        +    L   D        + L  +S   +      G+GI 
Sbjct: 180 VRDLGHHSCLDFRGTGRGETQWR--LVGPDGLKTVAVRARLNADSLSYLETLIASGAGIG 237

Query: 243 LLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP Y   + + N   P LVR++ D  T    +    P A     +++   + +    R
Sbjct: 238 PLPLYAGGVARANAPLPRLVRVLPDYATSGEPLNLVTPTARFVPKRVRLLIDMLTDAIR 296


>gi|238786633|ref|ZP_04630434.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC
           33641]
 gi|238725001|gb|EEQ16640.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC
           33641]
          Length = 302

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 128/287 (44%), Gaps = 10/287 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA  GSFT AA    L +SS+S++IS LE  +GI+L  R  R L LT  G 
Sbjct: 5   LQDMALFAKVAECGSFTRAATMAGLPKSSVSQRISQLEQNLGIRLLNRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ +
Sbjct: 65  RYLVHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLAADFQRQYPDVLL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++ +  +D+  D  D A+R  KP Q SSLI R+L     +  A+P YL      L  +
Sbjct: 125 EVLVSDTMVDLVEDGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLLHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD H  I         +           P+          ++ L   +  +   GI LL
Sbjct: 184 QLDIHRCIAHRAWQALILRRNEEFYRWQVPVLHV------TDNLLYARECALNHGGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P ++ ++   N  L+ ++         +Y  YP    N+  L  F +
Sbjct: 238 PAFLSREVVANGQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFID 284


>gi|315182214|gb|ADT89127.1| transcriptional regulator [Vibrio furnissii NCTC 11218]
          Length = 304

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 133/292 (45%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LTE
Sbjct: 4   QINLADIRSFVLIAQLGNFTKAAEALDVSRSHVSRQISQLEQQMGVTLLIRTTRSLKLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G           H ++   +   + +    G++RI +    LG+ ++   + +F+  YP
Sbjct: 64  AGKTFFAQCEAALHSIDQAVLAAVDDTEAVRGQIRINSVGGYLGEEIVADLITQFMARYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L L +  +D+  D  D A R+ K ++ S  + RKL+ + M  YA+P YL     P
Sbjct: 124 HVRVDLDLSSHRVDLIEDEFDVAFRMGK-LEDSGFVSRKLMDVEMGTYASPSYLDRHGHP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL+ H  +T G +     +      +++  I       L+  S   +++  + G+G
Sbjct: 183 THPKELEHHQCLT-GSVTRWAFQHKQSHESLECHIQ----GQLRCKSGRVMIKGALAGNG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P            L  + +D    S      Y        +++ F  F
Sbjct: 238 IIRVPALYCLHEVTRGALQPVFDDWNIQSVEFSALYHRDRYQPKRIRTFIEF 289


>gi|299533709|ref|ZP_07047081.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718258|gb|EFI59243.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 287

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 136/291 (46%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +   GS   AA+ L LS +++S+Q+  LE ++G  L  R  R ++LT+ G   +
Sbjct: 1   MRAFRRIVELGSIARAADALDLSSAALSKQLRALEAQLGAVLIQRTTRRMSLTDTGRAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +    +T +  ++  S++ +G+LR+   +    + L   L  F+  +P +QI L 
Sbjct: 61  AECCRLLDDFDTLEQSVRAQSLQVTGRLRVNAPLSFALSTLAPLLARFMQRHPQLQIDLS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D      D +IRL   +  SSLI R+L ++     A+P YL+    P S+  L 
Sbjct: 121 MEDRLMDAVGQGFDVSIRLSAELADSSLIARRLASLSQMLCASPAYLQQHGRPASVAALR 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+ +             LA VD  +  P  +   VN+ L + +  V G GI  LP +
Sbjct: 181 GHALLNYS------------LAQVDDGLQVPSEARASVNNSLMLRELLVAGLGIGALPSF 228

Query: 248 IVK---DNPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +       L  + ++D       VY  YP       K++AF +F+  + 
Sbjct: 229 LARPAIAQGQLEALALQDWAEQPRHVYVVYPTQRHLLPKVRAFVDFLAEEL 279


>gi|260769792|ref|ZP_05878725.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260615130|gb|EEX40316.1| transcriptional regulator [Vibrio furnissii CIP 102972]
          Length = 304

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 133/292 (45%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LTE
Sbjct: 4   QINLADIRSFVLIAQLGNFTKAAEALDVSRSHVSRQISQLEQQMGVTLLIRTTRSLKLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G           H ++   +   + +    G++RI +    LG+ ++   + +F+  YP
Sbjct: 64  AGKTFFAQCEAALHSIDQAVLAAVDDTEAVRGQIRINSVGGYLGEEIVADLITQFMARYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L L +  +D+  D  D A R+ K ++ S  + RKL+ + M  YA+P YL     P
Sbjct: 124 HVRVDLDLSSHRVDLIEDEFDVAFRMGK-LEDSGFVSRKLMDVEMGTYASPSYLDRHGHP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL+ H  +T G +     +      +++  I       L+  S   +++  + G+G
Sbjct: 183 THPKELEHHQCLT-GSVTRWAFQHKQSHESLECHIQ----GQLRCKSGRVMIKGALAGNG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P            L  + +D    S      Y        +++ F  F
Sbjct: 238 IIRVPALYCLHEVTRGALQPVFDDWNIQSVEFSALYHRDRYQPKRIRTFIEF 289


>gi|161505852|ref|YP_001572964.1| hypothetical protein SARI_04029 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867199|gb|ABX23822.1| hypothetical protein SARI_04029 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 300

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 5/289 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE++ L + S+SRQI  LE ++G +L +R  R + LT+ G   
Sbjct: 7   AMKLFIHVAERESFSRAAEEVGLPKGSVSRQIQALENQLGTRLLHRTTRRVQLTQDGMAY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 67  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLTNSLIMPRLSTFLHHYPGIALEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P S+ +L
Sbjct: 127 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLTRVNCASPQYLARFGYPESLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 186 ALHAMVHYS-LTPGISSPGFSFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             V++      L+ I+         V   YP     + ++  F  ++  
Sbjct: 245 ITVREALRAGTLIEILPQYRASPLPVTLHYPHRRNLSRRVHLFMVWLTE 293


>gi|254253795|ref|ZP_04947112.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124898440|gb|EAY70283.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 378

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 127/296 (42%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE +  ++L  R  R  T+TE G
Sbjct: 84  DLNDLYYFVKVVEHGGFTQAGRVLGVPKSTLSRRIAALEAQYDVRLLQRTTRRFTVTETG 143

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E  +  ++    +P G +R++    L +  +   +  F+ L+P ++
Sbjct: 144 REFYERCVGVLVEAEAAREVIERRHAEPQGIVRVSCPTALLEYRVSELVARFMALHPKVR 203

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAPH L+    P +
Sbjct: 204 VHLEATNRRVDLVSEGIDLALRVRFPPLEDSDLVMRILGDSPQRLVAAPHLLEGRSPPTA 263

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L     + +G   P     +  +    R            +   ++    + G GI 
Sbjct: 264 PAALVGMPSLDWG---PPRHHVWQLVGPDGRHEQLRHHPRFVTDDMHALRDAAIHGVGIV 320

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP  +V+D+     LV ++   +     ++  +P       +++   +F+    R
Sbjct: 321 QLPCMVVEDDLRTRKLVDVLPGWVPKGGVIHAVFPSRRGLLPRVRLLIDFLAEHIR 376


>gi|154244279|ref|YP_001415237.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158364|gb|ABS65580.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 305

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G+FT AA+ + + ++++++ +  LE  +  +LF R  R +T+T 
Sbjct: 1   MDQLAAMRAFVRVVETGNFTRAADLMDMPKATLTKHVQSLEQHLRTRLFNRTTRRVTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     + + L+     L  +   P G+LRI  +  L   LL   L +FL  YPD
Sbjct: 61  DGAAYYERALLILNDLDELDGSLSTAQALPQGRLRIDLSPSLATRLLIPALPDFLARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + +   ++ +D+  +  DC IR+ + I   +L+ R++  +   A AAP Y+     P 
Sbjct: 121 IALDVGCTDRPVDLLGENVDCVIRVGE-IHDPNLVARRIGELSFEAVAAPAYIARYGVPS 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +E    H ++ +   +      F ++   +  +       +  N   + +   + G G
Sbjct: 180 HPKEFEAGHVVVRYFSALTGRYHPFEFVRGSEV-VEVTGDYRMACNDGNAYIAAGLAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P + V+++     LVR++ D    +  ++  YP +   + +L+ F +++  
Sbjct: 239 VIQSPVFQVEEHLASGALVRVLTDWTAGAMPIHVVYPPSRHLSNRLRVFVDWVAE 293


>gi|288934538|ref|YP_003438597.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889247|gb|ADC57565.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 306

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + +KL +R  R L +T 
Sbjct: 1   MDRFDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAVYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ  + + ++ +D+  D  DC +R    I   SLI R +  + +  Y AP Y++    P 
Sbjct: 121 IQFDMGVSDRVVDLIGDNVDCVLR-GGEITDQSLIARHVGDLQIGVYVAPRYVERLGAPA 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL    H ++ F     + ++    L +    I       L V+   + ++  + G 
Sbjct: 180 HPRELQNTDHRIVGFVSSPSRKIDPLV-LRSESEQIEITGNYVLAVDDGNAYLEAGLAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+   +     L+ +          ++  +P      GKL+ F ++I  
Sbjct: 239 GVIALPIYMAAAHQAVGALIPLFTQWRISPMPLHLAFPPNRHVNGKLRVFIDWIVE 294


>gi|116695056|ref|YP_840632.1| transcriptional regulator [Ralstonia eutropha H16]
 gi|113529555|emb|CAJ95902.1| transcriptional regulator [Ralstonia eutropha H16]
          Length = 311

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 136/286 (47%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF  AAE + L +++++R I  LET +G+KL +R  R +++T  G+  +
Sbjct: 7   MQAFTRVVDVGSFARAAESMDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTNDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  L   +  P G L + TT  L Q +L  +L EF   YPD+++ L 
Sbjct: 67  ERCVRILADVEEAEQSLTRQNNSPRGTLSVDTTAGLAQLVLVPHLHEFFQAYPDLKLDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++ K ID+  +  D  +R+  P++ S ++ R++  + +  YA+P YL     P  + EL 
Sbjct: 127 INGKPIDLLQEGVDVVLRVGTPVEES-MVARRIGHVQLAFYASPIYLNRFGTPHDLAELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + F  L  +   +  W         E  + S +  N     M   + G G+A +  
Sbjct: 186 QHKAVNF--LSNRTGREMPWPMARGMERSEVLLPSAISTNDADVYMGCALEGHGVARVSR 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + +    +  LV +M D  T    +   YP+    + K++ F N+
Sbjct: 244 AMAEPYVASGRLVEVMTDWQTEELPISAMYPQNRHLSAKVRVFVNW 289


>gi|307131282|ref|YP_003883298.1| putative lysR-family transcriptional regulator [Dickeya dadantii
           3937]
 gi|306528811|gb|ADM98741.1| putative lysR-family transcriptional regulator [Dickeya dadantii
           3937]
          Length = 296

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 124/287 (43%), Gaps = 7/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF  VA  GS T AA +L +S+S  +R I+ LE  +G++L +R  R L LT  G+ +
Sbjct: 6   AMQVFVDVADLGSLTAAANKLDMSRSMATRYIASLEHWLGVRLLHRSTRSLGLTSAGNDM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++    E           +P G +RIA+++  GQ  L   L  +   YP    +L
Sbjct: 66  LVRCRQILALSEDMAALSGHGDTEPHGVIRIASSVSFGQFYLSPALSRYRARYPHTTTEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL ++ I +  +  D +I +       +LI + L        AAP YL     P++  +L
Sbjct: 126 ILTDRAIKLVEERIDLSIDVTN-TPDHNLIAKPLGHCASVVCAAPDYLARHAHPVTPNDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +    L     E F        P        +  N  L ++     G G+A LP+
Sbjct: 185 IRHDCLNHTRL---GREWFFTHRENGAPHRVMVAGRVIANDTLVLLNAARAGEGVACLPE 241

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ +   +   L  ++ D  T +  +Y CY         L+   +F+
Sbjct: 242 FVARAGLEAGELTPLLPDYQTQALGIYACYVSRRHMPATLRTLLDFL 288


>gi|209517419|ref|ZP_03266261.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209502186|gb|EEA02200.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 323

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 5/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L+ F     S +F+ A  QL ++  ++S+QI  LET +G +LF R  R L++T++G 
Sbjct: 12  FRALKTFAATVESTNFSAAGRQLGVTPGAVSKQIGMLETLLGCRLFQRTTRHLSVTDEGR 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L+ +  E   ++E     L  +  + SG ++++  I   +  L   L  F   YP + +
Sbjct: 72  RLYAMAREPAQQIEDAIAALSSNETQLSGTVKVSLPIAFSRVALLPVLGRFRERYPQVTL 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  +N+ +D+  +  DCAI        SS++ R L ++ +   AAP YL+   EP +I+
Sbjct: 132 DLRFENRHVDLISEGYDCAIGQLHD-TDSSVVARTLASLTLILCAAPAYLERHGEPQTIE 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI--- 241
           +L+ H LI F       ++ +  LA     + EP  S L V+   ++ +  V G GI   
Sbjct: 191 DLEHHELIAFRSPSSGRIQTWKLLARNKEVVFEPG-SHLIVSDTEALTEVAVGGCGIALL 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                  +     L R++   ++    +   Y        ++ AF  F+  + R
Sbjct: 250 GAHHAAALIAAGRLQRVLPKFVSRRSDICIYYAARRHLPPRVAAFVEFVVEEVR 303


>gi|318607217|emb|CBY28715.1| transcriptional regulator [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 303

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 131/291 (45%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA  GSFT AA  + L +SS+S++IS LE  +GI+L  R  R L LT  G 
Sbjct: 5   LQDMALFARVAECGSFTRAAAMVGLPKSSVSQRISQLEQSLGIRLLTRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ +
Sbjct: 65  RYLVHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLATDFQRQYPDVLL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++ +  +D+  D  D A+R  KP Q SSLI R+L     +  A+P YL      L  +
Sbjct: 125 EVLVSDSMVDLVEDGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLLHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD H  I         +   +       P           ++ L   +  + G GI LL
Sbjct: 184 QLDTHRCIAHRAWQALILRHEDEFFRWQVPALHV------TDNLLYARECALNGGGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P ++ ++   N  L+ ++         +Y  YP    N+  L  F + +  
Sbjct: 238 PAFLSREVVANRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFIDVVME 288


>gi|187924709|ref|YP_001896351.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715903|gb|ACD17127.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 300

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 134/298 (44%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L +F +VAR  +   AA +L ++  SIS++++ LE  +G++L  R  R ++LT 
Sbjct: 1   MDGFSDLNLFALVARHRNLAAAARELGVTPPSISKRLAQLEQRLGVRLVNRTTRRVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G       S +   L   +  + +S  +P+G LR+  +   G+  +   +  F   +P 
Sbjct: 61  EGEIYLANGSRILDDLAELEQLVTQSRAEPAGLLRVNASFGFGRAHIAPAISRFSERFPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++IQL L ++ + +  +  D  IR  + +  + +  R L+       A+P Y+K    P 
Sbjct: 121 MKIQLHLTDRPVSLQEEGFDLGIRFGE-VPDARINARLLLKNQRVVCASPAYVKRHGAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +   +            +   +         L  N   +++++ + G G+
Sbjct: 180 MPHDLTRHACLVLRENESAYGTWH--FSRGKKSETVKVDGPLSSNDGSAVLKWALDGRGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + +  +     LV ++ D   P+  ++  Y E  + + KL+ F  F+  + R+
Sbjct: 238 AVRSAWEIAGHLRRGELVPLLADWTLPNADIHAIYLERHRLSAKLRTFIEFLGDELRE 295


>gi|218670472|ref|ZP_03520143.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 237

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 126/238 (52%), Positives = 165/238 (69%), Gaps = 1/238 (0%)

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+R   +V  KLET +++L E++  PSGKLR+ TT+ LGQ  L   ++EFL LYPD
Sbjct: 1   QGELLYRTAHDVLLKLETVKMQLTETTETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYPD 60

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QIQLILDN+++D++M +ADCAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP 
Sbjct: 61  VQIQLILDNEEVDVNMRHADCAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEPQ 119

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I++LD H +ITFG+  P  + D NWL    R     RI  LQ+NS  SI + C+LG G+
Sbjct: 120 KIEDLDNHRIITFGEPAPSYLLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRACLLGIGV 179

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           A LPDYIV  +P L+++  +   PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 180 ACLPDYIVGRDPGLIQLAINADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 237


>gi|323524526|ref|YP_004226679.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323381528|gb|ADX53619.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 315

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 10/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRQVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +LE  +  +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQVLTELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R +   H+   A+P YL+    P +  +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARPIAMAHLVLCASPDYLRRRGTPKTAADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN I +  +        + L T            L VN   +     + G+GIALL  
Sbjct: 187 ARHNFIQYAGVS-----GLDVLQTTGEVARVRLSGNLIVNHLEAQRVMVLQGAGIALLGT 241

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++  +     LV ++ D + P    ++  Y      + K+++F +F   +
Sbjct: 242 EVIGADLAAGRLVPLLVDEVPPRELPIHVVYASRRHLSAKVRSFVDFFAER 292


>gi|238792710|ref|ZP_04636342.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238728066|gb|EEQ19588.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 306

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AA+ LH+S++++++ I  LE  + +KL +R  R L +T 
Sbjct: 1   MDRFDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLEARLRVKLLHRTTRKLGVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAVYYERVIRLLADMEDAENSLSSAAITPRGRLRVDVPSPLARLILVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ  + + ++ +D+  D  DC +R    I   SLI R +  + +  Y AP Y++    P 
Sbjct: 121 IQFDMGVSDRMVDLIGDNVDCVLR-GGEINDQSLIARHVGDLQIGVYVAPSYVERLGAPA 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL+   H ++ F       ++    L +    I       L V+   + ++  + G 
Sbjct: 180 HPRELENTDHRIVGFLSSRTGKIDPLV-LRSESEHIEITGSYVLAVDDGNAYLEAGLAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+   +    +L+ +          ++  +P       KL+ F ++I  
Sbjct: 239 GVIALPIYMAAAHQAVGSLIPLFAQWRISPMPLHLAFPPNRHVNAKLRVFIDWIVE 294


>gi|119773717|ref|YP_926457.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119766217|gb|ABL98787.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 303

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 137/293 (46%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V RS  F+ AA  + + +S+ISR+++ LE E+G++L  R +R L+LT+ G
Sbjct: 3   DLNGMALFAAVVRSQGFSQAARDIGMPKSTISRKVAQLEEELGVRLLQRDSRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + ++LE  +  ++ +    SG LRIA  +   Q L+      FL LYP ++
Sbjct: 63  TLFYQHCETIVNELEAAKAVIEHTHADVSGSLRIAIPVSFSQELIANLCSGFLRLYPSVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + D+ +  +  D AI+   P+Q S  + R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDSDVGLVGEGYDIAIKYG-PLQPSDNVARLLFERQPILVASPGYLKKHGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H  I  G      +     L    R         ++VNS + + Q  +   GIA+
Sbjct: 182 KELGQHAGILLGTTRSAPIWP---LGKGGRKTMVSFNRKVRVNSAVMVRQLALDDFGIAM 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L     K +    +L+ I+ +     F VY  Y    +    +  F +F   +
Sbjct: 239 LSHAQCKKDLASGSLLPILPEWPMEPFKVYGVYSSRKQLATNISVFLDFFIKR 291


>gi|307727486|ref|YP_003910699.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588011|gb|ADN61408.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 336

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 131/290 (45%), Gaps = 9/290 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  GSF  A E+L + +SS+SR +  LE ++ ++LF R  R  +LT +G   +   
Sbjct: 31  FLAVANEGSFARAGERLGIGRSSVSRNVQKLEAQLEVRLFLRTTRKTSLTREGELFYERC 90

Query: 71  SEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                ++      ++E  S  P G LRIA+T   G+ ++   L+ F   YPDI ++L+L 
Sbjct: 91  LPGVERIVEALDGMRELRSGPPRGHLRIASTPGFGRRVVAPLLRGFHARYPDITLELLLS 150

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            +  D + D  D + R  + ++ S ++ R+L+ + M   A+P Y +    P  +++L  H
Sbjct: 151 ERVADFTTDRVDVSFRDGR-MEDSGIVARQLIAMQMVVCASPAYARVHGLPRCVEDLAGH 209

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
             I F     +     +W   VD  +   + +     N    I+Q  + G GIA LP Y 
Sbjct: 210 RCINFCTASGRVK---DWEFKVDGHLVRHQPTAQHTFNDADLILQAVLDGVGIAQLPAYQ 266

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V        LV  +          Y CY        +++ F +++    R
Sbjct: 267 VSALLRERRLVSCLAQHAPDDGGHYICYLSRKHLPARIRVFVDYMTEHTR 316


>gi|257487513|ref|ZP_05641554.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330891603|gb|EGH24264.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330988776|gb|EGH86879.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331008741|gb|EGH88797.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 298

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 143/301 (47%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGS + AAE++  + S +SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  ++E+ +  L  S   P+G+LRI        + +  ++ EF   YP
Sbjct: 61  EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  ID+     D AIR+   +  S+L  R L +  ++  A+P YL+    P
Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRIG-VLPDSTLHARSLGSCLLNIVASPAYLQRHGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L +H L+ F  +           A  DR   +P IS    +S  ++    + G G
Sbjct: 180 KTAEDLAQHVLVGFTHVESLNQWPLRH-AEGDRLSIKPAISA---SSGDTLRHLVLEGVG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L D++  D+     LV +++   +     ++  Y    +   +++ F +F+  K   
Sbjct: 236 IACLSDFMTNDDLREGRLVCLLKGANSGYRQPIHAVYYRNSRLALRIQCFLDFMQEKLAG 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|107028302|ref|YP_625397.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686296|ref|YP_839543.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897466|gb|ABF80424.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652011|gb|ABK12650.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 305

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 137/301 (45%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA    +S +++SR ++ LE  +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEHGSFAAAARSTGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTISEKAGEIYRQAEEAESSAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +     AAP YL+    P   
Sbjct: 126 IDLHLSDASVDLIADGFDAALRIAA-LPDSSLVARRLCAVTQFVVAAPEYLRREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL     + +       +  F                 L+V +  +++   + G  IA 
Sbjct: 185 LELADRPCLPYAYRARSAVWRFT--NDAGDEESVMPTGPLRVTNADALLPTLLDGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD--WK 298
           LP++I  +   +  L  I+ D    +  +YF  P A     K+ A  ++      +  W+
Sbjct: 243 LPEFIAGEYLADGRLEAILPDWSLTTGGLYFVTPSARARPAKVTALSDYFAEHLGNPVWR 302

Query: 299 F 299
           +
Sbjct: 303 W 303


>gi|308185578|ref|YP_003929709.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1]
 gi|308056088|gb|ADO08260.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1]
          Length = 298

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 133/293 (45%), Gaps = 11/293 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+F  W  + +F +VA  GSFT AAE+  L +SS+S++IS LE  +GI+L  R  R L L
Sbjct: 1   MAFRQWQDMALFALVAECGSFTGAAERAGLPKSSVSQRISQLEQRLGIRLLNRTTRQLNL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G +      E+    E     +      PSG+LRI +   +G  LL     EFL LY
Sbjct: 61  TFAGERYLLHCQEMMQASERADQAIASLRENPSGRLRITSPAGIGATLLARCNAEFLRLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ + + + ++  D+  +  D A+R  +P Q SSLI R++        A+ HYL     
Sbjct: 121 PDVTLDVSISDEMRDLVQEGFDVALRTGQP-QESSLIGRRIGNCPRLLVASQHYLNQHPP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L  Q+L  H  I         ++  +       P G         ++ L   +  +  +
Sbjct: 180 LLHPQQLSAHRCIAHRAWNEWVLQRDDEFYRWLLPPGH------LTDNLLYARESALGDA 233

Query: 240 GIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           GI LLP ++      +P LV ++ D       ++  YP    N+  L  F  F
Sbjct: 234 GITLLPHFLTDGAMADPRLVPVLPDWEVEGNELWLVYPGRKLNSPALARFIEF 286


>gi|145297715|ref|YP_001140556.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850487|gb|ABO88808.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 311

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 130/289 (44%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  + R    + AA +L +S+S IS+Q++ LE E+G +L  R  R  +LTE G +  
Sbjct: 1   MVIFDALVREQGISAAARRLGVSKSHISKQLAQLEAELGAQLVQRTTRRFSLTELGQEYA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +          + E   K SG L +      G+  +   LK F   YP++++++ 
Sbjct: 61  RHCRALMAVALEADSMVAERRGKVSGVLHLGVGQSFGRLHVIPRLKAFQDRYPELELEVS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   ++  +  D  I   +  +  +L+ ++L  IH    A+P YL +   PL  ++L 
Sbjct: 121 LFDHRTNLVDEGLDLWITTYED-KPEALVGQRLADIHFVLVASPDYLLSHGTPLHPKDLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN IT+     +  E +++    +R   +      +V+   ++    + G GIA + +Y
Sbjct: 180 QHNCITYQSRERRYHE-WSFRQGKERQTVQV-AGNYRVDLAEAVRDAALAGLGIAYVANY 237

Query: 248 IVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++     +  L+ ++          V+  Y        K++ F +F+  
Sbjct: 238 LLDKELQSGQLIPLLPQWRPNQKMAVHAVYARREHLDPKIRLFIDFLKE 286


>gi|262043470|ref|ZP_06016593.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039212|gb|EEW40360.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 306

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 139/296 (46%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AA+ LH+S++++++ I  LE+ + ++L +R  R L +T 
Sbjct: 1   MDRFDAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLESRLRVRLLHRTTRKLGVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E  +  L  +++ P G+LR+     L + +L   L  F   YPD
Sbjct: 61  DGAVYYERVIRLLADMEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI + + ++ +D+  D  DC +R    I   SLI R +  + +  Y AP Y++    P 
Sbjct: 121 IQIDMGVSDRVVDLIGDNVDCVLR-GGQITDQSLIARHVGDLQIGVYVAPSYVERLGAPA 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL    H ++ F       ++     +  +R I       L V+   + ++  ++G 
Sbjct: 180 HPRELQNTDHCIVGFLSSRTSKIDPLVLCSENER-IEITGNYVLAVDDGNAYLEAGLVGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP+Y+   +     L+ +          +Y  +P       KL+ F ++I  
Sbjct: 239 GVIALPNYMAAAHQAVGALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWIVE 294


>gi|312884531|ref|ZP_07744235.1| transcriptional Regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367843|gb|EFP95391.1| transcriptional Regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 293

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 14/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +  F  VA +G F+ AA+QL  S S +SRQIS LE  +G  L  R  R ++LT+
Sbjct: 1   MDSFEGIIEFAAVAETGGFSAAAKQLGCSTSHVSRQISRLEERLGSTLLTRSTRLVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   E+   LE     +  +    SG ++++      +  L   L EF  LYP+
Sbjct: 61  SGIVYYQQVKELIVGLEQANDTINATQQHLSGNIKVSAAGGFVEYYLAPALMEFSALYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++ L+++ I+++ +  D AIR  + +  S+LI +KL++  + A A+  YL+    P 
Sbjct: 121 ITVEIDLNSRLINLNEEGVDFAIRYGE-VSDSNLIAKKLISRPLMAVASQSYLEKNGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
               L  H+ +              W   VD       +    + N+   I++ C+ G G
Sbjct: 180 HPAHLKDHDCLVANKET--------WEFIVDGKKEFITVNRRWKSNNANIILEACIRGLG 231

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA +P    +   +N  +  I+E         +  YP       +++   +F+      W
Sbjct: 232 IAYMPKSTFEQALENKQVQPILEPFWGEGTNSWIVYPHKRFMPVRVRTSIDFLIDYFAKW 291


>gi|254524615|ref|ZP_05136670.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219722206|gb|EED40731.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 301

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 124/289 (42%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VA  GSF  AA  L LS   + + I  LE  +G++L  R  R  +LT+ G    
Sbjct: 7   LRTFAKVAEVGSFAAAAAVLDLSPQLVGKHIQALEQHLGVRLLNRTTRKQSLTDFGQAFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  +   + +  +P G+LRI+  +  G + L   +  ++  YPD+Q+ L 
Sbjct: 67  ARARVILEEVEGAEQLAEVARGRPMGRLRISAPVTFGVHALGPAVVAYMQDYPDVQVDLN 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N  ++I  D  D   R    +  S L+ R+L    +   A+P Y+ +    +   +L 
Sbjct: 127 LSNSLVNIVEDGYDLVFRTGD-LADSGLVARRLGPYPLVLCASPAYVASRPAIVHPTDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP-- 245
           +H  + F   I +    F         +  P  S   VN    ++   V G G+ L P  
Sbjct: 186 RHECLGFAHSIIRTRWSFR--DADGSVLTVPVSSRFMVNQAEPLLTAAVGGLGLILQPFE 243

Query: 246 -DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                    +LV ++      S  ++  YP   + T KL++F +F   +
Sbjct: 244 MLSAALARGDLVEVLPTFEPVSTWIHLLYPRDRQVTPKLRSFVDFCVAR 292


>gi|207727996|ref|YP_002256390.1| hypothetical protein RSMK04389 [Ralstonia solanacearum MolK2]
 gi|206591240|emb|CAQ56852.1| hypothetical protein RSMK04389 [Ralstonia solanacearum MolK2]
          Length = 305

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAAARLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S     +E       E    P GK+R+    D+G+ L+   +  F+  YPDI
Sbjct: 61  GQSLYQVASHALEDIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMREYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDMVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQRQGVPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H+ + F        +    L   D        + L  +S   +      G+GI 
Sbjct: 180 VRDLGHHSCLDFRGTGRGETQWR--LVGPDGLKTVAVRARLNADSLSYLETLIASGAGIG 237

Query: 243 LLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP Y   + + N   P LVR++ D  T    +    P A     +++   + +    R
Sbjct: 238 PLPLYAGGVARANAPLPRLVRVLPDYATSGEPLNLVTPTARFVPKRVRLLIDMLTDAIR 296


>gi|325921049|ref|ZP_08182929.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325548473|gb|EGD19447.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 299

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+VF  VAR GSFT AA QL +SQS++S  +  LET +GI+L  R  R +++TE G
Sbjct: 5   NLNDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L    +    +++     L E   KP+G +RI T        +   L + L  YPD++
Sbjct: 65  ARLFETVAPRLEEIDDELSALTEFRDKPAGTIRITTAGHAADAYIWPALSKVLPDYPDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ +D    DI  +  D  IRL   +    +         M   A P Y  +   P   
Sbjct: 125 IEVTVDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPMQRMAVVAVPSYFVHHTIPAVP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN I         +  ++      R +          N   +I++  + G G+A 
Sbjct: 185 ADLAQHNCIGLRLPTHGGLLPWD-FEKDGREVKVRVDGQWTFNGSSAILRAALAGGGLAF 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+ +V ++     L R+++D   P    Y  YP   +++  LK   + +
Sbjct: 244 LPETMVLEHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSSALKVVIDAL 293


>gi|325168294|ref|YP_004280084.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064017|gb|ADY67706.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 312

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 134/293 (45%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF   +  GSF   A+ + +S   +++ +  LE  +G  L +R  R  +LT+ G 
Sbjct: 16  LSSMAVFVKASDLGSFAATAKAMEMSPQMVAKHVVFLEDRLGTALLHRTTRRQSLTDVGR 75

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   +E  +    +   +P G LR+   +  G   L   +  +L  YPD++I
Sbjct: 76  VFYDRCKQLLSDVEAAESVALDMRSQPKGVLRVNAAVTFGAFSLAPFVTRYLDRYPDMRI 135

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D   +  +  +R+ + ++  SLI   L    + A A+P YL     P    
Sbjct: 136 DLTLNDRFVDPLEEGFEVMVRIGE-VEDPSLIALPLAPYRLIACASPDYLIRRGTPRIPL 194

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243
           +L++H+ + +GD          W  T      E RIS  ++ N + +++   + G GI L
Sbjct: 195 DLEQHDCLAYGDGPSST--PCRWQFTRSGKSEEVRISGRIRSNDWKALLHASIAGYGITL 252

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P+ ++        LV+++ D   PS  ++  YP   + T K+++F   +  +
Sbjct: 253 GPESVLNAEITAGRLVQVLPDHEGPSRPMHVIYPVGRRPTAKVRSFVEALIDE 305


>gi|307307399|ref|ZP_07587135.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307321897|ref|ZP_07601281.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306892456|gb|EFN23258.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306901913|gb|EFN32513.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 299

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +RVF  VA+  SFT AA QL ++  +++R +S LE  +G++L  R  R ++LT  G
Sbjct: 3   DLSDIRVFLAVAQQRSFTAAARQLSMTPPTVTRAVSALERSLGVQLLLRTTRQVSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        +  + +  + +L+E     +G +RI   + LGQ LL   +  F   +P + 
Sbjct: 63  AVYAARVEPLIRQFDQVRDDLREEQGDVAGLIRINAPLSLGQQLLPDIVSGFRAEHPQVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ IDI  +  D A+R+ +  +  S I RK+  +     A+P YL     P + 
Sbjct: 123 VSLSLTDRFIDIVSERFDLALRVSEAPRDRSTIWRKVCRVRRILVASPGYLAIFGTPETP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I + +   + + +   L    R         L  N+   I +    G G+AL
Sbjct: 183 DDLSRHGCIAYDE---EAISETWELTNGGRTRKALAGKVLAANNGELIAKLVEDGQGLAL 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LP +IV D      L +++ +   P   +   YP   K   ++  F +F
Sbjct: 240 LPHFIVGDALARGALKQVLAEWEPPELWLTLYYPPYEKLPMRVARFSDF 288


>gi|260778886|ref|ZP_05887778.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605050|gb|EEX31345.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 302

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 148/295 (50%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V   GSFTHAA+ L++++S++SR++  LE  +G++L  R  R L LT +
Sbjct: 1   MDLNAIAVFAQVVDCGSFTHAADALNMTKSTVSRKLVELEKHLGVRLITRSTRSLVLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++ + ++   +   ++E+  +     G L +   ++LG  ++   +  FL  YP +
Sbjct: 61  GERFYQSSLQMLEIMNQAELEVSANQDLIRGPLNVVLPVELGHQIMGSYINAFLKEYPSV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L N+++DI  +  D   ++ + ++ S+L+ R L        A+P YL+      S
Sbjct: 121 TINLELSNREVDIIAEGIDLYAQIGE-LEDSALVSRPLTKSQRVLVASPEYLEEHGGIES 179

Query: 183 IQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L   H ++   +   + +  ++ +      +       L+VN+  + ++ C+ G GI
Sbjct: 180 HRDLIPPHQMVEVFNRAVR-LPKWHLIPEDGDSLQIDLPHRLRVNTITACLKACLDGLGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+LP++I +++     L++++ +   P   V   Y +      + K F +F+   
Sbjct: 239 AVLPEFICREHFASGRLIQLLPEYQMPEVLVSLVYADRQLMPKRKKVFIDFLLEA 293


>gi|149202558|ref|ZP_01879530.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
 gi|149143840|gb|EDM31874.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
          Length = 309

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  VA +GSF  AA +LHLS  +++R I+ LE  +G ++F R  R LT+T+ G 
Sbjct: 4   LHEIEVFIAVAEAGSFAGAARRLHLSPPAVTRAIAALEDRLGARVFQRTTRSLTITDVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       V   L+T + E    +  P G L +  ++  G++ L   +  FL+ +P + +
Sbjct: 64  RFLGAARRVLGDLDTAEREAMGETTAPQGHLTVTASVTFGRSALGPMVGSFLVAHPRVSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L ++ +++  +  D AIR+ + +  S LI ++L T+H    A+P YL     P +  
Sbjct: 124 SVLLLDRVVNLVEEGVDLAIRIGE-LPESRLIAKRLGTVHRILVASPEYLAQHGTPAAPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H +I F  L+P          +  R         L++N  ++ +   +LG GI   
Sbjct: 183 DLRHHAVIAFTGLMPNREWRHR---SGQRSASVALAPRLEINDAVAAIDAAILGQGITPT 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y+V  +     LV +++    P   V   YPEA     KL+AF +F
Sbjct: 240 LSYMVAGHIRAGRLVPVLQAHTLPPQPVNLVYPEARLMAPKLRAFLDF 287


>gi|28870352|ref|NP_792971.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853599|gb|AAO56666.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 303

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + +F  V RSGSF  AA QL +  +++SR+I  LE ++G +L  R  R L LT
Sbjct: 1   MITDLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRIQHLEVQLGTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +   +     L +   +L     +PSG++RIA   D         + +FL  YP
Sbjct: 61  QTGEHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+        A+P YL     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S++ L  H+ +      P     +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLESLQAHDCV--SAAYPGGSTTWRMLGPDAKIHDVQLSSRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIALLP  +++ +     LV ++      S  ++  YP   +    + AF   +  K R
Sbjct: 238 GIALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLR 296


>gi|83718504|ref|YP_443118.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83652329|gb|ABC36392.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 555

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE  +G++L  R  R  TLT++G
Sbjct: 259 DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTDEG 318

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   YP + 
Sbjct: 319 ALFHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGRLRIAPIVAAFRRQYPQVT 378

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 379 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGAPERP 437

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W     +P+     + L  N   +     + G+GIAL
Sbjct: 438 ADLLAHRCIVMGEQPR-----VEWRFDGPQPVAVEVSAALLTNDGGAARALALEGAGIAL 492

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W +
Sbjct: 493 KSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWCW 552


>gi|268592418|ref|ZP_06126639.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291312205|gb|EFE52658.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 298

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + L  F +VA+  SFT AA +L ++ S++S  I  LE  +GI+L  R  R +++T
Sbjct: 2   MKGKMNDLHAFLIVAQEQSFTKAAARLGVTPSALSHTIRLLEERLGIRLLARTTRNVSVT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L      ++ +++     L E    P G +R++ T D  +  ++  L  FL  YP
Sbjct: 62  EAGAQLMNAIRPLFEQIDIELNALSELRASPRGTIRLSCTDDQIEIYIRPILNNFLQKYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI I++ +D    +I  +  D  IR+   I    +  R      + A A+P Y K   +P
Sbjct: 122 DITIEIYVDYGFTNIVEERFDAGIRIGDDINKDMIAVRIGPDWRLIAVASPDYFKQHPKP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L   +L +H  I         +  +      D          L  NS L  +   + G G
Sbjct: 182 LFPNDLSEHQCINIRHRAAGAIYAWE-FKQNDHTTSIKVDGQLVFNSTLHQLNAALDGMG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +P+++ +       L  ++ D        +  YP   +++    AF   I
Sbjct: 241 IAYIPEHLAEPYIAKGKLQAVLIDYSPYFEGFHLYYPNRRQSSPAFMAFVEAI 293


>gi|167902966|ref|ZP_02490171.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 301

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W     RP      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGEQPR-----VEWRFDGPRPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W++
Sbjct: 239 KSIWDVGPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 298


>gi|254460174|ref|ZP_05073590.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           HTCC2083]
 gi|206676763|gb|EDZ41250.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 283

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 102/271 (37%), Positives = 161/271 (59%), Gaps = 4/271 (1%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79
            THA + LHLSQS++SRQ+ GLE  +   LF+RHARGL LTEQG  L   T+ +  +L+ 
Sbjct: 1   MTHAGDTLHLSQSAVSRQVRGLEESLNTTLFHRHARGLILTEQGELLFDATTAMIKRLDA 60

Query: 80  TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139
            +  +++S  +  G+LR+ TT   G   L   L      YPD++I L+L+ K +D+ M  
Sbjct: 61  AEARIKDSEEEVFGELRVTTTTGFGSLWLAPRLPHLYDKYPDLKIDLMLEEKVLDLPMRE 120

Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIP 199
           AD AIR+++P Q+  LI+++L+T+HM  YA+P Y+     P SI+++    LI      P
Sbjct: 121 ADVAIRMKEPSQAD-LIRKRLMTVHMQLYASPDYVAQNGMPESIEDIGNRRLIC---QNP 176

Query: 200 KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIM 259
           + ++    L  V   +     S L VN+Y  ++Q  + G GI +LPDY+ +D P LVRI+
Sbjct: 177 RTVQVGAGLQLVQHLLAYDVPSMLTVNNYFGVLQSVLHGLGIGVLPDYVTQDFPELVRIL 236

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D+ +    V+  YPE L+ + +++ FR+F+
Sbjct: 237 PDLSSNEVPVFLAYPEELRQSKRIQVFRDFV 267


>gi|116253894|ref|YP_769732.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|241206376|ref|YP_002977472.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|115258542|emb|CAK09646.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|240860266|gb|ACS57933.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 297

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 134/292 (45%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE
Sbjct: 1   MDTLTRIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  S++  +++     ++E++ +  G+LRI+         +  +L +F    PD
Sbjct: 61  AGHTYYRTASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLIDFAKENPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H  A P +L+   +  
Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRITK-LEDSGMIARKISDFRIHICATPEFLERYPDLD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     I   D   +      +    +          ++VNS  + ++  + G G+
Sbjct: 180 HPTALSSVPFIV--DTNARTQASIRFHNPDNTSFAVAVSGPIEVNSPHATLRAALAGIGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +PD+I +   ++  LV +  D       +Y  YP       K++ F +++
Sbjct: 238 AFIPDFIARKPIESGELVTLFNDYTPTDRGIYAVYPHRRYLPAKVRIFVDYL 289


>gi|190575769|ref|YP_001973614.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190013691|emb|CAQ47326.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 301

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+ R+F  V    SFT AA+QL L +S++S  I+ LE  +G +L  R  R +  T 
Sbjct: 1   MDRIDRFRIFTRVVECSSFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVATTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H     +  ++E  +   ++   +P G L+I     +G+ ++   L +F   +P 
Sbjct: 61  DGDVFHARCLRLIAEVEDAESLFRQDDAQPVGLLKIDVPSRIGRRIIAPALPDFFARHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L + ++ +++  D  D  +R+ + +  SSL+ R L  +     AAP YL+    P 
Sbjct: 121 VEVELGMTDRAVNLIEDGCDAVLRVGQ-LGDSSLVARTLGQLDFVNVAAPAYLREYGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  + +       +E + W          P    ++VNS  + +  CV G G+
Sbjct: 180 QPADLQQHRAVNYASPTTARVEPWEWQEGTQLRTL-PMPGWVRVNSAEASIACCVAGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V+    +  LV +M   +     V    P       +++ F  ++    R
Sbjct: 239 LQIPRYDVQAELQSGALVEVMPQHVAQPLPVTLLQPHRQHRAQRVQVFIEWLLPVLR 295


>gi|330821525|ref|YP_004350387.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327373520|gb|AEA64875.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 325

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 142/294 (48%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V  +GSF  AAE+L +SQ  +SR I+ LET + I+LF R  R ++LT++G 
Sbjct: 9   LNGMSIFVAVVEAGSFAAAAERLDMSQPGVSRAIARLETRLEIRLFDRSTRAVSLTDEGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + HR  + +   LE        S+    G+LR+       + +L   L+ FL  +P++++
Sbjct: 69  RFHRQITPLLSGLEEAAATASGSATVVRGRLRVNIDPFFSRLMLGPRLEAFLNQHPELRL 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  ++  D+  D  D A+R   P + S++  RKL+   +   A+P YL     PL  Q
Sbjct: 129 ELVTRDQLGDLVADGFDLAVRFGVP-RESAMRARKLLDTRILTVASPDYLARHGRPLKPQ 187

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGI 241
           EL   +H  I F D  P+    F W     R  I     + L VN   +++  C  G G+
Sbjct: 188 ELGDGRHVCIDFRD--PESGRPFPWEFHRKRERIVVETQARLVVNDVGTMLSACAAGYGV 245

Query: 242 ALL----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A +     + ++ +   LV +  D     F ++  Y  A     K +AF +F+ 
Sbjct: 246 AQVMALGSEALLAE-GRLVELFPDWPDERFPLHALYLSANHPPAKTRAFLDFVV 298


>gi|188590953|ref|YP_001795553.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|170937847|emb|CAP62831.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 304

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 125/299 (41%), Gaps = 10/299 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + VF  V   GSF+ AA+ L ++ S++SR +S LE  +G  L  R  R   LTE G 
Sbjct: 6   LNAMAVFARVVECGSFSAAAQDLGMTPSAVSRHVSRLEGRLGASLLQRTTRAFALTELGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++   + +            E    P G LR++  +  GQ  L   L   L  YP + +
Sbjct: 66  SVYAACARMTAAAREVTALAGEHGGAPHGVLRVSAPVSFGQAWLAPRLPPLLAKYPGLDL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L ++ +D+  +  D A+R+ + + +  L  R L  +     A+P YL     P +  
Sbjct: 126 QLTLADRMVDLVEEGLDVAVRIAREL-APGLAARPLREVRYRLVASPAYLARHGAPATPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L     +  G       E +           E RI   L +N+ L+IM      +GI L
Sbjct: 185 DLPAARCLYLG--YGNFGERWTLRHHAGGDKVEVRIPPRLTLNNSLAIMSMVERDAGIGL 242

Query: 244 LPDY---IVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +PD+      +   +V ++ D         T Y  Y        K++AF + +   A D
Sbjct: 243 VPDFSLGDALERGRVVTVLGDWDILEPYIGTAYAVYTPTRHVPPKVRAFVDHLAASAGD 301


>gi|66047029|ref|YP_236870.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257736|gb|AAY38832.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 297

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 123/287 (42%), Gaps = 4/287 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G 
Sbjct: 6   LNDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI
Sbjct: 66  RLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q
Sbjct: 126 EICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I            +       R +          NS + ++   + G G+A +
Sbjct: 186 DLTQHTCINIRHSPNGSCYAWE-FEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAYV 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           PD + + +     L  ++ D        +  YP   + +    AF  
Sbjct: 245 PDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVE 291


>gi|83644495|ref|YP_432930.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632538|gb|ABC28505.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 297

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 142/295 (48%), Gaps = 14/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D+L+ F      GSF+ A + L LS SS+SRQI  LET++  KLF R  R L L+++G 
Sbjct: 2   LDELKTFIKCCECGSFSAAGKTLLLSPSSVSRQIDSLETKLQTKLFQRTTRQLILSDEGR 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L     ++  +L+ T   L++   +P G+LRI+     G+  +   L +FL LYP + +
Sbjct: 62  FLLERAEDILARLDDTVASLRQLHGEPEGRLRISVLETYGRLHISPLLPKFLALYPKVSV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L+N+ +D+  D  D AIR+  P + S L  +KL    M   A+P Y+ +   P + +
Sbjct: 122 DIELENQMVDLYRDAVDIAIRIGPP-EDSRLKAKKLTDGRMLLCASPDYVASFGPPQAPE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L +HN +    LI +      W     +     ++   L+      +++  + G GI L
Sbjct: 181 DLARHNCL----LISRGRRQVWWRFHKGQEHRRVQVQGSLRSAGGTPLLESALQGVGITL 236

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           L  + ++   D   L+ ++       +      +Y  Y +       ++AF +F+
Sbjct: 237 LTQWSLQPYIDEGRLLPLLPQWRASLYPENGGEIYAAYIDNHYMRPAIRAFLDFL 291


>gi|87119099|ref|ZP_01074997.1| putative transcriptional regulator (LysR family protein)
           [Marinomonas sp. MED121]
 gi|86165490|gb|EAQ66757.1| putative transcriptional regulator (LysR family protein)
           [Marinomonas sp. MED121]
          Length = 297

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +    ++L +       G+F+ AAE+L ++ S +SR I  LE ++   LF R  R   LT
Sbjct: 2   LKIQIEELEMLVATVNCGNFSKAAEELGVTASVVSRTIKKLENKLNTTLFNRTTRKTQLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L    S +  + +  + +L E +  P+G+L +        + +   +  F   YP
Sbjct: 62  QEGQWLFNEASAMIAQGQRVESQLGERTDAPAGRLVVDAATPFSLHAIAPLIAGFNQEYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + +     +ID+     D AIR+   +  S+L  RKL       YA+P YL     P
Sbjct: 122 DVTVIMTSTESNIDLIERKVDIAIRIGH-LTDSTLKARKLGETSRQLYASPSYLDKYGLP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  +L +HN + F       +    W            +     ++  ++ Q  +   G
Sbjct: 181 KSPSDLKQHNCLGFVKPDRLNV----WPLQDKNKNAIHIVPKTYADNGETLRQLAIQSCG 236

Query: 241 IALLPDYIVKDN---PNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA L  + V  +    +L  I+E D+   S  +Y  +    +   +++ F ++I  
Sbjct: 237 IACLSRFTVNADVQAGHLRPILESDIQPESIPIYAVFYSDNEVNPRMRCFLDYISE 292


>gi|254521073|ref|ZP_05133128.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219718664|gb|EED37189.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 313

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 7/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A +GS   AA  L LS S++ ++I+ LE ++G +LF+R  R + LT+
Sbjct: 15  MDSISALLAFVRTAEAGSIVGAARVLGLSASAVGKRIARLEQDLGTRLFHRTTRRVHLTD 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L +       +L   Q +L +    PSG LRI     +G   L   L  F   YP 
Sbjct: 75  EGDLLLQRCRRALDELSEAQADLAQRQHAPSGLLRIGLP-TIGYRFLLPVLPGFQQRYPQ 133

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L  +++ +D+  +  D  IR  + +  SSL  R+L        AAP YL+    P 
Sbjct: 134 VQLELDFNDRIVDVVSEGLDAVIRSGE-LADSSLTARRLGGFRFMLCAAPGYLQARGTPG 192

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + EL  H  + F       +  +  L  V+   G    + +  N+  +++   +   G+
Sbjct: 193 DVSELRMHTALRFRYPTTGKLHPWQ-LPGVEGDAGAGLPTAMTCNNMEALLAAAIGRMGL 251

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           A +PD++  D   +  L R++  + T        +P     + +L+ F ++
Sbjct: 252 AWMPDFLAADALADGRLQRVLPALPTHQGQFSLLWPGGRHPSARLRVFIDY 302


>gi|126439144|ref|YP_001058745.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126218637|gb|ABN82143.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 301

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET++G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLETQLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRLRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W     RP      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGEQPR-----VEWRFDGPRPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W++
Sbjct: 239 KSIWDVGPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 298


>gi|226807744|ref|YP_002791440.1| putative transcriptional regulator [Enterobacter cloacae]
 gi|226810058|ref|YP_002791753.1| putative transcriptional regulator [Enterobacter cloacae]
 gi|226425971|gb|ACO54064.1| putative transcriptional regulator [Enterobacter cloacae]
 gi|226426285|gb|ACO54377.1| putative transcriptional regulator [Enterobacter cloacae]
          Length = 297

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 130/291 (44%), Gaps = 4/291 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L+VF  VAR  SFT AA ++ ++ S+IS  +  LE  +GI+L  R  R ++ TE G +
Sbjct: 2   DELKVFLTVARLKSFTKAAAEIGVTPSAISHTVKSLEERLGIRLLARTTRSISTTEAGER 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  +++     L E   KP+G +R+    D+ Q L++  L +FL  YPDIQI+
Sbjct: 62  LINEVGPLMEQVDDAISRLSELREKPTGVIRLTAADDVIQYLIRPVLPDFLSRYPDIQIE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    DI     D  IR    + +  +  +          AAP Y K   +P   Q+
Sbjct: 122 IGIDYGFTDIVDQRFDAGIRPGDVLNNDMIAAKISQNWRQLVVAAPDYFKRYAKPRKPQD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN I         +  + +     +   + +      NS +  +   + G GIA +P
Sbjct: 182 LLNHNCINVRYSDTSGLYAWEFEKDAQKFSLKVK-GQYIANSTIHQLDAALDGLGIAYIP 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +Y+      +  L+ ++ +        +  YP   +++    AF   +  +
Sbjct: 241 EYVADGYIKSGKLIAVLTEWCPYFDGYHIYYPHRRQDSPAFMAFLQLLRDR 291


>gi|15601809|ref|NP_233440.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121587164|ref|ZP_01676939.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|153817652|ref|ZP_01970319.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153821727|ref|ZP_01974394.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227812622|ref|YP_002812632.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229505809|ref|ZP_04395318.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229510336|ref|ZP_04399816.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229517532|ref|ZP_04406977.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229605342|ref|YP_002876046.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254850216|ref|ZP_05239566.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746212|ref|ZP_05420159.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262158702|ref|ZP_06029816.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|298499824|ref|ZP_07009630.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9658503|gb|AAF96952.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121548603|gb|EAX58655.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|126511808|gb|EAZ74402.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126520723|gb|EAZ77946.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227011764|gb|ACP07975.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229345568|gb|EEO10541.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229352781|gb|EEO17721.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229356160|gb|EEO21078.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229371828|gb|ACQ62250.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254845921|gb|EET24335.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255735966|gb|EET91364.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262029582|gb|EEY48232.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|297541805|gb|EFH77856.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 301

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELGVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P
Sbjct: 125 DVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPAYFTLCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLADHRCLT-GSVKRWSYQHKETKQTLD----VPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQELARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|190572889|ref|YP_001970734.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190010811|emb|CAQ44420.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 299

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 141/299 (47%), Gaps = 7/299 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D + +R+   VA + SFT AA QL LSQS +SR I  LE  +G+KL  R+ R + LT 
Sbjct: 5   SLDLNAVRMLVQVAEARSFTVAAGQLGLSQSGLSRAIGRLEATLGVKLLQRNTRNVALTP 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +     + +   L+  + +L +    PSG L+I+     G+ +L   L   L  +P 
Sbjct: 65  DGRQFVEQVAPLLAGLDDAERQLADRPCTPSGTLKISAPSMFGRKVLVPMLAPLLEQHPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++ +L ++ +D+  +  D A+R    I    ++ R L  +     A+P YL  C  P 
Sbjct: 125 LQVEAVLSDRLVDLVEEGFDAALRTG-VIADQRIVARPLRPLRWVTVASPAYLARCGAPD 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +  L  H  +   +L    + D+ +L         P  + +  +S   +++  + G GI
Sbjct: 184 DVAALQDHACLAVRNLRSGRLVDWQFLQDGQLREFTPP-TRMVFDSGDPLVEAAIAGIGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             + D+ V D   +  L R+++     S  +   YP + +++ KL+   + +   A DW
Sbjct: 243 VQVMDFAVADALADGRLQRVLQPFEGRSRALSLIYPPSRQHSPKLQVLADALL--AGDW 299


>gi|209515437|ref|ZP_03264303.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209504157|gb|EEA04147.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 302

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 125/299 (41%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF  V  SGS T AA    LS + +   +  LE  +G +L +R  R   ++
Sbjct: 1   MDL-LKAMTVFVRVVESGSLTAAAVACDLSPTMVGNHLQALEKRLGARLIHRTTRKQQIS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +    E+   ++ ++    +    P G+LR+   +      L   + ++    P
Sbjct: 60  AFGQTYYERCVEILGLIDDSERLALDHLATPRGRLRVTAPVVFSNECLMPVIADYCERCP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ ++  +   D+  D  + A+R+   + +  L+ R L    +   A+  YL+    P
Sbjct: 120 EVKLDIVATDALSDLIDDGFEAAVRIGA-LGNPDLVARPLKPYRLVLCASRAYLRTHGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVL 237
            S   L  H+ +T+                +  P G    P    L++++  ++ +  + 
Sbjct: 179 SSPDALQSHHCLTYAYPPRSEWHTAQPEWMLHGPHGRVSVPVDGRLRIDNSEALRRAVLR 238

Query: 238 GSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GIA+LP+ +V  +     L+ ++ +   P   +   Y    + + KL++F  F+  +
Sbjct: 239 GLGIAMLPEILVAADLRAKRLIEVLPEFAAPERPLNLLYLRERQTSPKLRSFIEFMVER 297


>gi|254180008|ref|ZP_04886607.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184210548|gb|EDU07591.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 301

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 134/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGEQPR-----VEWRFDGPHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V+ +     L R++ +  + +  ++  YP       +++ F +++     R W++
Sbjct: 239 KSIWDVRPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 298


>gi|161519952|ref|YP_001583379.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353871|ref|YP_001949498.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344002|gb|ABX17087.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337893|dbj|BAG46962.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 304

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 138/296 (46%), Gaps = 11/296 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F  AAE + ++   +SR I+ LE  + ++LF R  R ++LTE+G + +
Sbjct: 12  ISVFAAVVDAGTFVGAAEVIGMTPPGVSRAIARLEKRLNVRLFNRTTRSVSLTEEGRRFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE         +    GKLRI     + + +L   L  F+  +P+++I+ I
Sbjct: 72  EQVMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRTVLGQPLDAFMDTHPELEIEFI 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
             +   D+ MD  D A+R  +P ++S+LI RKL+   +   AAP Y+     P   ++L 
Sbjct: 132 ARDSLGDLVMDGFDLAVRFGEP-KASTLIARKLLDSRIVTVAAPSYVARWGRPAKPEDLE 190

Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
             +H  + F +  P+  + F W     R          L VN   +++  C+ GSGIA +
Sbjct: 191 GRRHRCLEFRN--PETGKPFQWEFHRKRKRIVVNTQGRLTVNDPGALLNACLAGSGIAQM 248

Query: 245 ----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                + ++ D   L+ +  + +   + +Y  Y        K +AF +F+    R+
Sbjct: 249 LLLGAEPLIAD-GRLINLFPEWVDERYPLYVYYASRHHVPAKTRAFLDFVVELMRN 303


>gi|326796530|ref|YP_004314350.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326547294|gb|ADZ92514.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 296

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 137/297 (46%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +RVF  V  + SF  A+E L +S+  ++R I+ LE  +G+KL  R+ R +++T 
Sbjct: 1   MDKFQAMRVFCRVYEAESFKSASETLDISRPMVTRYINTLEEVLGVKLLQRNTRNISITH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++    +   LE  + EL + S  P G+L+++  +D G + +     EF  LYPD
Sbjct: 61  AGNLYYKHCVAILEALEEAENELNDLSNSPRGRLKVSVPMDFGLSHMVPIFNEFRKLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I +  +++ +D++    D A+R    +     + R L     H  A+P YLK   EP 
Sbjct: 121 IRIDVDFNDRRVDLTESGVDIAVR-GGDLGGDLFVARPLTEFKGHVCASPEYLKTYGEPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L +HN + +   +      + ++ + +             N+  ++ +  + G+GI
Sbjct: 180 VPQDLIEHNCLLYS--LAPSPNKWTFIDSKNDEFDVLVSGTFAANNGGALTRMALEGAGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              PD++V     +  LV I+ +        +  Y +        +    F+  K R
Sbjct: 238 IYQPDFLVDKYIQSGQLVPILTNFRGYIGKFHAVYTQRRLLPKPTRLLLEFMIEKLR 294


>gi|312959577|ref|ZP_07774094.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311286294|gb|EFQ64858.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 301

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L +R  R L+LT 
Sbjct: 1   MDRLQAMRVFVTVVDLGSQSAAADHLDLSRPVVSRYLAELEDWVGARLLHRTTRKLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS+      ++       Q  + E    P G LR++ +   GQ  L   + E++  YP 
Sbjct: 61  AGSETLPRCRQLLELCGDMQAAVSEPDDAPRGLLRLSVSTSFGQAQLAEAIAEYVKRYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L + ++ +++  +  D AIR    +   +LI R+L        A P YL+    P 
Sbjct: 121 VTVDLQMLDRTVNLVDERIDLAIRTSNDL-DPNLIARRLTVCRSVVCATPAYLREHPAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L +HN +T                     +  P    +  N   ++++  + G G+
Sbjct: 180 KVEDLARHNCLTHSYFGKSLWH----FEENGEHVSVPVHGNITANEASTLLRVTLAGVGV 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP Y   D+     LVR++  V      +Y  Y         L++  +++  +  +
Sbjct: 236 AMLPSYQAGDHIRRGELVRLLPQVEPRQMNIYAVYASRKHMPSALRSLLDYLVQRFPE 293


>gi|296532072|ref|ZP_06894847.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296267597|gb|EFH13447.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 314

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 6/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D L  F  V  SGS T AA +L L++S +S++++ LE ++  +L  R  R +  T
Sbjct: 1   MRPDVDALATFLQVVDSGSVTAAAARLGLAKSVVSKRVAQLEAQLSTQLLNRARRHVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+ L      +  +L+T   E+   S K SG+LR+A  +  G   L   +  F+  YP
Sbjct: 61  EAGALLAERARALLAQLDTVADEVMARSGKLSGQLRLAAPLSFGTRHLGPLIAGFMRDYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ L LD++ +D+     D  +R+ + +  S+L  R+L         +P Y      P
Sbjct: 121 EIEVVLDLDDRHVDLQAGAYDLGLRIGR-LADSALRARRLGLSRRVLCCSPDYAARHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++ L  H+ + + +     +  F        P        L  NS  ++++    G G
Sbjct: 180 RSLEALAAHSCLGYANAAAGHLWRFV-PGDGGAPRSLVLRGRLTANSGEALLEAACAGIG 238

Query: 241 IALLPDYIVK---DNPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + +LP +++        LV + +   +     +   YP       K +    ++  + R+
Sbjct: 239 LVVLPRFLMAAPLREGRLVELDIPGWVPEPDNIQLVYPPTQALPLKTRTLIEYLAERIRE 298


>gi|170695066|ref|ZP_02886214.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170139918|gb|EDT08098.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 302

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 140/289 (48%), Gaps = 8/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +  + +F   A+S SFT AAE+L L++S++ + I+ LE  +G +LF+R  R ++LT  G
Sbjct: 6   TFSGILIFVTAAKSRSFTDAAEELGLTKSAVGKAIAKLEDRLGAQLFHRTTRSISLTADG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  +    ++ T +  L   + +P G+LRI      G+ +L   L +    +PD+Q
Sbjct: 66  DAYFAACASALDEISTAETALGPGNQRPVGRLRIDMPAAFGRRILVPILLDIGRKHPDLQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             +   +  ID   +  D  IR  +   SS L+ R+L +  M   A+P YL     P ++
Sbjct: 126 FTMTFSDHLIDPIEEGVDLVIRFGELESSSGLVARRLTSQRMVIAASPDYLAQRGTPSAL 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H+ I    +  +  +  +W   VD  +      +  Q++   SI++  + G G+ 
Sbjct: 186 EDLKNHSCI----VGHRRGQPLSWRVNVDGEVSRISPPATHQISDGDSIVEAALAGLGLC 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P  +++   ++  L+ ++ED+ +    V+  +P+      K++   +
Sbjct: 242 QMPMSLLRPHLESGKLISVLEDISSEFIDVHAVWPKVAHLRPKVRHVVD 290


>gi|330897630|gb|EGH29049.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 344

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 136/304 (44%), Gaps = 16/304 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A   SF+ AAE+L +  S++SR I  LE ++GI LF R  R L LTE G 
Sbjct: 46  LAALAAFVESANGNSFSKAAERLGIKASTVSRYIKDLEQDLGIALFNRSTRKLALTEGGQ 105

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V  +L   +      +  P G+L+++      ++ +   + EF+  YPDI +
Sbjct: 106 TFLYHAQKVLFELSEAKAATSALNQNPRGRLKVSLPPAFARHHILPLVGEFIKRYPDITL 165

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+   +D+     D AIR+ + + +S+L  RKL  +      +P +     +P    
Sbjct: 166 DLCLEESQVDLIATGIDLAIRIGR-LANSNLKARKLAEVKTFLCVSPEFAARYSQPDCPD 224

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +    +  +C E   W A  +  +  P  + L +N   + +     G G+ALL
Sbjct: 225 QLP----VDMMIIGRQCPEALIW-ANDNEQVSLPVGAVLWINDLDAQLIAVSSGLGMALL 279

Query: 245 PDYIVK---DNPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD- 296
           PD++      +  LVR + D        S  V+F YP     + K++ F +FI  +  D 
Sbjct: 280 PDWLASASLRDGRLVRWLPDWEIKTSQESGAVWFVYPPKRIVSSKVRCFIDFIAERVVDP 339

Query: 297 --WK 298
             W+
Sbjct: 340 PVWQ 343


>gi|238022638|ref|ZP_04603064.1| hypothetical protein GCWU000324_02547 [Kingella oralis ATCC 51147]
 gi|237865841|gb|EEP66977.1| hypothetical protein GCWU000324_02547 [Kingella oralis ATCC 51147]
          Length = 289

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 138/298 (46%), Gaps = 13/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +++ +F  VA++  F+ AA +L + QS++SR+I+ LE  +G++LF R  R L LT 
Sbjct: 1   MDYLNEMALFVEVAQANGFSRAAAKLGMPQSTLSRRIAALEDALGLRLFNRSTRRLELTG 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  +       L E      G LR++  +D+  N++   L EF   YPD
Sbjct: 61  AGAYYLERALPIVAEARLLHGALDEMRETVRGALRVSLPVDMAYNMVAPLLPEFAARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++   +  + +D+  +  D A+R  K +  S  I   L       YAAP YL    EP 
Sbjct: 121 LRVDFDVTPRKVDLIGEPFDLAVRTGK-LPDSDYIATPLAEFSGCLYAAPGYLAQRGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H  + F D +      +      +R   +P+ S    NS   + Q   +G GI
Sbjct: 180 SPDDLAAHECLRFSDGL------WTVQRGSERVTVQPQ-SRFGANSPGMLRQMAAVGLGI 232

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ALLP+ +V+D+     L  ++ D  +    V+      L  T  ++AF  F+  K  +
Sbjct: 233 ALLPEILVRDDVAQDRLKAVLPDWQSEKTPVHALTATRL-LTANVRAFIGFLREKWAE 289


>gi|190573017|ref|YP_001970862.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190010939|emb|CAQ44548.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 302

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 132/291 (45%), Gaps = 5/291 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR    +  +GSFT AAE+L  + S++SRQ+  LE  + ++L  R++R L+LTE G 
Sbjct: 4   FAALRALRAIVDAGSFTAAAERLGTTHSAMSRQLRQLEEHLQVRLLDRNSRRLSLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  + +  +L+      +    +PSG++RI+    +    L   L  FL  YP + +
Sbjct: 64  DYYREAATLLDRLQEADDRARAGQAQPSGRVRISVPQVVASQELPHWLPSFLQRYPQVTL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  D++ +D+     D A+R+   +  S L+ R+L +      AAP YL     P    
Sbjct: 124 DLSADDQLVDVVGGGFDLALRIAASLPDSQLVARELASCPRILVAAPAYLARHGLPRQAA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H L+ F       M  +         +       L+V++  ++    + G GI+L 
Sbjct: 184 DLEQHTLLGFSPT--PSMPPWQLQGPRGASVSVDAGQRLRVDATPALYAAALAGMGISLF 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               V+++     L+R++          +  YP A     K++A    +  
Sbjct: 242 TALTVQEDLRAGRLIRVLPAWHAGQRRYFALYPHARALAPKVRALVEHLAA 292


>gi|33599456|ref|NP_887016.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33567052|emb|CAE30965.1| probable LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 328

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AA+ LH+S++S+++ +  LE  + ++L  R  R +  T 
Sbjct: 1   MDRFDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNATA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    ++   LE  +  L  +S  P G+LR+         +L   L  F   YPD
Sbjct: 61  DGAAYYERVRQLLADLEDAETSLSGASATPGGRLRVDVPSPFASTILVPALPAFQARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L + ++++D+  +  DC IR    I + SL  R +  + +  YA+P YL     P 
Sbjct: 121 ILLHLGVSDREVDLIDENVDCVIR-GGQIGNLSLAARHVGDLQLGVYASPGYLARAGVPA 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL   +H +I F     + +         +R     R + L ++   + +   +   
Sbjct: 180 HPRELQDAQHRIIGFSWSRARRLFPCAMRRADERIEVAGRHALL-LDEGNAYLAAGLAAM 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  +P Y+ +   +   L+R+  D       +Y  YP+    + KL+ F ++I  
Sbjct: 239 GVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHVSAKLRVFIDWIVE 294


>gi|126175718|ref|YP_001051867.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|152999353|ref|YP_001365034.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|160873968|ref|YP_001553284.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|304411136|ref|ZP_07392751.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307306431|ref|ZP_07586174.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|125998923|gb|ABN62998.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
 gi|151363971|gb|ABS06971.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
 gi|160859490|gb|ABX48024.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|304350329|gb|EFM14732.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306910722|gb|EFN41150.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|315266202|gb|ADT93055.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 303

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 140/293 (47%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V R+  F+ AA +    +S+ISR+I+ LE ++G++L  R  R L+LT+ G
Sbjct: 3   DLNGMMLFAAVVRAKGFSQAARETGHPKSTISRKIAQLEEQLGVRLLQRDTRNLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++    + +++E  +  ++ +    SG LRIA  +   Q L+      F+ LYP+++
Sbjct: 63  ALFYQHCDSIRNEVEAAKAVIENTHDDVSGSLRIAIPVSFSQELIANLCSGFMRLYPNVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + DI +  +  D AI+   P+QSS L+ R L        A+P YLK    P + 
Sbjct: 123 LDVQFTDNDIGLVGEGYDIAIKYG-PLQSSDLVARLLFERQPILVASPGYLKLKGTPATP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H+ I  G      +      +       + ++   +VNS + + Q  +   GIA+
Sbjct: 182 KELSLHSGILLGTSRSAPIWPLGKGSRKTMANFQRKV---RVNSPIMVKQLAMDDFGIAM 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L +   K    N  LV I+++     F VY  Y    +    +  F +F   +
Sbjct: 239 LSNSACKTELANGQLVPILQEWPIEPFKVYGVYSSRRQLATNISVFLDFFVKR 291


>gi|298488168|ref|ZP_07006205.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298157447|gb|EFH98530.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 297

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 126/288 (43%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G 
Sbjct: 6   LNDLQAFLQVARDQSFTKAATRLGVTPSALSHTMRGLEERMGLRLLARTTRNVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI
Sbjct: 66  RLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q
Sbjct: 126 EICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I            + W    D      R+S     NS + ++   + G G+A 
Sbjct: 186 DLTQHTCINIRHSPNGSC--YAWEFEKDSRKLNIRVSGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +PD + + +     L  ++ D        +  YP   + +    AF  
Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVE 291


>gi|296116017|ref|ZP_06834637.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977371|gb|EFG84129.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 302

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 151/295 (51%), Gaps = 8/295 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  VA +GSF+ AA  L ++ S++S+ I  +E  +G++L  R  R L+LT++G   
Sbjct: 7   EMQVFVRVAEAGSFSEAARHLLMTPSTVSKLIGRMEERLGVRLIERSTRRLSLTDEGRLF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H  ++ +  +L   + E+   +   SG +R++ ++  G   ++  L EF   YP++ + L
Sbjct: 67  HERSAALLAELNDIEREVCHGAGGASGIVRVSASVPFGVLGIEPLLPEFWRTYPNVIVDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+ +D  D A R+  P+  SSL+ RK+        A+P YLKN   P++I +L
Sbjct: 127 SLSDEIVDLYLDRTDIAFRVG-PLTDSSLLARKIGVARRQIVASPDYLKNHGTPITIDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + HN + F       +     L    R +       L  N+  ++ +  + G G+A L D
Sbjct: 186 NHHNCLGFNFRRAAPVWP---LREGRRIVDRMVGGSLLANNGETVRRLVLAGVGLARLGD 242

Query: 247 YIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           + V+D+    +LV ++ D     +  V+  Y    +   +++ F +F+  + + +
Sbjct: 243 FHVRDDIAHGHLVEVLADAGHGDAEDVHALYLGGQRMPQRIRLFLDFMVPRLQAF 297


>gi|319760839|ref|YP_004124776.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|317115400|gb|ADU97888.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
          Length = 312

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F+++ R GS +  A +L L+  ++SR+++ LE  +G++L  R  R  +LT +G + 
Sbjct: 10  EMAFFHLLVRCGSLSATARELGLTTPAVSRKLALLEQRLGVQLLNRTTRRNSLTPEGEEY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +E  +  L+ S  +P G LR+  T+  G++ +   +  F   YP +QIQ 
Sbjct: 70  LVQARRILADIEDVEHSLRRSMAEPLGLLRVNATLGFGRSHIAPVISRFCKTYPQVQIQF 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  IR  +P   + +I RK+        AAP YL+    P    +L
Sbjct: 130 HLSVTPPPLTDDAFDVCIRFGEP-PDARVIARKVAANRRLLCAAPAYLERHGTPRVPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I+              L+   R         +  N     + + + G GI +  +
Sbjct: 189 VRHQCISIHHGQDAYGIWR--LSAGRRTESVKVAETMVTNDGDIAVAWALDGHGILMRAE 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +     +  L +++E   TP   +Y  YP   +   ++ AF +F+  + 
Sbjct: 247 WDIDKYLHSGRLRQVLEQYSTPPADIYAVYPSRHQKARRVTAFVDFLCAEL 297


>gi|257487616|ref|ZP_05641657.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331013099|gb|EGH93155.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 306

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F+++A+ GS    A +L ++  +IS+++S LE  +G +L  R  R ++LT +G  
Sbjct: 5   QDLSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEVRLGTRLVNRTTRSMSLTAEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +  +++  +  +  SS  P G +R+  ++  G+  +   L  F   YP++QIQ
Sbjct: 65  YFSHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +  +D++    D  IR    +  ++   RK+ +      A+P YL+    P  + E
Sbjct: 125 LEISDHPLDLATHGFDLGIRFGS-LPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN I                +   R         L  N     + + + G GI L  
Sbjct: 184 LQHHNCIFLRQNETPYGVWS--FSNGGRTQNVKVHGALGCNDGEVALNWALEGFGILLRA 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ +     +  L  ++ED       VY  YP+ L  + +++   +F+  +
Sbjct: 242 EWDIARYVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRCLIDFLVER 292


>gi|114570397|ref|YP_757077.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114340859|gb|ABI66139.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 310

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 137/305 (44%), Gaps = 13/305 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +R+F + A   + + A  QL L+ +  S +++ LE ++G  L +R  R ++L+ +
Sbjct: 1   MDTNGVRLFVLAADLLNISAAGRQLGLAPAVASARLAKLEHQIGADLLHRSTRKVSLSLE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      E+  + +     L    +  SG LR A +    Q  +   L EFL  +P +
Sbjct: 61  GMEFLPFAREILAQEDAANAALGNGRMDVSGTLRFAASSTFVQLHIAPILPEFLDRHPLL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+     D A+R    I+ SSL  RKL        A+P YL     P S
Sbjct: 121 HLDLKLSDTQMDLIEGGFDLALR-NYAIRDSSLRARKLADDQRILCASPDYLARHGTPTS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSG 240
             +L  H LI F +  P+ +       +   P    +PRI C   +   S+      G+G
Sbjct: 180 AADLVDHQLIGFSNGPPRTLSTKAGEPSGSFPPVGSKPRIIC---DDGASMRLAARAGAG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA-- 294
           IA+   + +  +    +LVR++ D        ++  YP++   T K++ F +++  K   
Sbjct: 237 IAMSSVWSLYQDIQEGSLVRVLPDYEIDDGSAIWLVYPKSNVLTAKVRVFIDYLAEKIGK 296

Query: 295 -RDWK 298
             DW+
Sbjct: 297 SPDWE 301


>gi|104783326|ref|YP_609824.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95112313|emb|CAK17040.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 303

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 131/298 (43%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L  R  R L+LT 
Sbjct: 1   MDRLNAMRVFVTVVDLGSQSAAADHLELSRPVVSRYLAELEDWVGARLMQRTTRKLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       Q  +++    P G+LRI+ +   GQ  L   L  ++  YP 
Sbjct: 61  AGLETLPRCRQLLELAGDLQNAVRQPDDAPRGELRISVSTSFGQAQLVDALAAYVKRYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L + ++ +++  +  D AIR    +   +LI R+L        A+P YL+    P 
Sbjct: 121 VKVELQMLDRTVNLVDERIDLAIRTSNDV-DPNLIARRLSVCRSVICASPAYLREHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL  HN +T                   + +  P    +  N  +++ +  +  +GI
Sbjct: 180 RVEELSGHNCLTHAYFGHSLWH----FEVNGQSVTVPVQGNISANEAMTLQKAALASAGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP Y       +  LVR++ +       +   Y         L++  +F+  +  D
Sbjct: 236 AMLPTYQAAPALRSGELVRLLPEARPRELNLNAVYTSRKHMPATLRSMLDFLAQRFGD 293


>gi|113868145|ref|YP_726634.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526921|emb|CAJ93266.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 305

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L++F  +   GSFT AA  L + +++ +  I  LE  VG +L  R  R +  T 
Sbjct: 1   MDRFDALQLFTRIVELGSFTGAASALDMPRATATHAIKELEARVGARLLERTTRQVRPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +  V   LE  +  L      P G LR+         ++   + EF   YP 
Sbjct: 61  DGQAFYERSKRVLQDLEDAETSLSTQVANPRGTLRLDLHGTHATMIILPRIGEFRERYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + +   ++ +D++ +  DC +R  +P + SSL+ R+L  +     A+P YL    +P 
Sbjct: 121 IDLIVSSGDRLVDLAGEGIDCVVRAGQP-RDSSLVARRLAEMPEVLCASPAYLAAHGKPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
              EL +H  I  G         + +  TVD  + E      + V+         + G G
Sbjct: 180 HPSELAQH--IGVGFFSRNHDRRYPFTLTVDGEVQEFKARGWISVSDAECYTSAALAGCG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +P + V+++     LV ++E    P   V   YP   +   +++ F +++
Sbjct: 238 LIQVPRFRVEEHLRAGRLVPVLEAWPCPDLPVSARYPFHRQLAPRVRVFVDWV 290


>gi|73538167|ref|YP_298534.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72121504|gb|AAZ63690.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 313

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 135/287 (47%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF  AA+ L L +++++R I  LET +G+KL +R  R +++T  G+  +
Sbjct: 7   MQAFTRVVDMGSFARAADSLDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTSDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  L   +  P G L + TT  L +  L  +L +F   YP++++ L 
Sbjct: 67  ERCVRILADVEEAEQSLTRHNNSPKGTLSVDTTAGLARIALIPHLHDFFAAYPELKLDLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++ K ID+  +  D  +R+       S++ R++  + +  +A+P YL     P  + +L 
Sbjct: 127 INGKPIDLLQEGVDVVLRVGAV--DESMVARRIGQLKLAFFASPIYLNRFGTPHELADLA 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  +    L  +   ++ W  T      E  + S +  N     ++  + G G+A L  
Sbjct: 185 QHKAV--NHLSNRTGREWPWQFTRGNESTEILLPSAISTNDGDVYLECTLAGHGLACLSR 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + +    +  LV +M D  +    +   YP+    + K++ F N++
Sbjct: 243 VMAEPYVASGRLVEVMSDWQSEELPISAMYPQNRHLSAKVRVFVNWV 289


>gi|90414488|ref|ZP_01222463.1| Hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90324396|gb|EAS40958.1| Hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 301

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 136/294 (46%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  V    SF+  AE   +++S +S++IS LE ++G++L YR  R LTLTE GS
Sbjct: 4   IDDLVLFTQVIEHASFSKVAELNKITKSVVSKRISKLENQLGVQLIYRTTRKLTLTEPGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+  + ++    ++    +   S   SG +R++     G+ LL   L +F   +P + +
Sbjct: 64  ILYHRSKDINQVAQSAFDAITGYSEALSGNIRVSVPTISGELLLAEALSDFCQKHPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +DN  +D+     D  IR    ++ SSLI R +        A+  YL+    P + +
Sbjct: 124 EMSMDNHFVDLVAQNYDLVIRTGY-LEDSSLIARHIFNSRWVICASTDYLEKNGIPETPK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            L  HN + +     +    F+WL   +               ++ +++ +  +  +GIA
Sbjct: 183 ALQHHNCLGYTQ---QSTGPFDWLFIRNNTETYTLKVNGNFSSDNAVALRKATLANNGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V D+     L+ ++ +       +Y  YP   K + +++A    I  +
Sbjct: 240 YLPTCLVFDDLKSGKLIEVLPEHSGKVVGIYAVYPYTKKPSKRIQALIEHIRDR 293


>gi|53721400|ref|YP_110385.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76818985|ref|YP_337081.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|167722441|ref|ZP_02405677.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167741423|ref|ZP_02414197.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167818606|ref|ZP_02450286.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167826983|ref|ZP_02458454.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167848498|ref|ZP_02474006.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167897050|ref|ZP_02484452.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167921668|ref|ZP_02508759.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|254185299|ref|ZP_04891887.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|52211814|emb|CAH37813.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|76583458|gb|ABA52932.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|184209534|gb|EDU06577.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 323

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 137/306 (44%), Gaps = 9/306 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EFL 
Sbjct: 61  ALTEAGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLPEFLR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++Q+ + N+ ID+  D  D A+R+R +P QS++++ R L         AP  L+ 
Sbjct: 121 RYPEVRVQIRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVGAPSLLQQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL+  +L   +  T           FN +A             L     ++I +  +
Sbjct: 181 NAPPLAPDDLAGFD--TLDTPSGDGRHVFNLIAPDGTRHTHEHEPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 ARDWKF 299
             + ++
Sbjct: 299 LDNERY 304


>gi|317493997|ref|ZP_07952413.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917770|gb|EFV39113.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 300

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 133/291 (45%), Gaps = 10/291 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F +V   GSFT AA +  L +SS+S+++S LE ++G++L  R  R L LT
Sbjct: 1   MFNQLQDMALFALVVECGSFTSAALRAGLPKSSVSQRVSNLEQQLGLRLLNRTTRQLNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +      E+    E   + LQ     PSG+LRI     +G  LL     +F L YP
Sbjct: 61  FAGERYLVHCREMIQAAERADLSLQRLKDNPSGRLRITAPAGIGATLLAHVCSDFRLSYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ +++ + +   D+  +  D A+R  KP Q SSL+ R+L     +  A+P YL    E 
Sbjct: 121 EVSLEIFISDVMRDLVQEGFDVALRTGKP-QDSSLVGRRLGYSPRYLLASPSYLAQHPEL 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L++H  I         ++        + P+          ++ L + +  + G+G
Sbjct: 180 EHPKQLERHQCIAHRAWHEWVLQRGGEFYRWELPMDHA------ADNLLYVRECVLAGAG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           I LLP ++ +   +   LVR++         +Y  YP    N+  L  F  
Sbjct: 234 ITLLPAFLSQELVEQGRLVRVLPQWEAEGNELYLVYPSRKLNSPALDRFIE 284


>gi|261379509|ref|ZP_05984082.1| transcriptional regulator, LysR family [Neisseria subflava NJ9703]
 gi|284797972|gb|EFC53319.1| transcriptional regulator, LysR family [Neisseria subflava NJ9703]
          Length = 296

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 141/296 (47%), Gaps = 14/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AA+QL +S +  S+ +S LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAADQLGISTAMASKHVSHLENTIQAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +      +   L E+   YP + + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGTDTPQGMLRVTMPLWFAGGNMSAWLAEYRQRYPKVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ ID+  +  D A+R+ K   S SLI + L  I     AAP YL     P + + + 
Sbjct: 127 LDNRHIDLIAEGFDLALRVSK-TPSPSLIVKPLAKIEFVLLAAPDYLARHGTPDTPESVM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I     +P      NW  T  R  GE  I      ++ ++ L I +    G+GI  
Sbjct: 186 QHQAI-----LPSYTSQQNWEIT-HRITGEKAILHLSPVIRSDNTLMIRELIKAGAGIGY 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            P + V+       L++++ D    +  +   Y +    + K+++F +F+  K  +
Sbjct: 240 QPLWAVQQELKEGTLIQLLPDYTIWTDQLNATYVDRAFLSAKVRSFIDFLNEKISE 295


>gi|226946347|ref|YP_002801420.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
 gi|226721274|gb|ACO80445.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
          Length = 302

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 127/290 (43%), Gaps = 8/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA+ GSF  AA    ++ + + R++  LE  +G+KL +R  RGL LTE G + 
Sbjct: 6   ELHSFVQVAQKGSFAAAALSEGVTPAILGRRLDALEKRLGVKLMHRSTRGLRLTELGERF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  + +  + E+  +S    G L ++     G+  +  + + FL  +P++++  
Sbjct: 66  LERARQLLREFDDVEAEIASNSSLVKGHLAVSAPAAFGRRHVAAHAQGFLQRFPNLRLSF 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  IR+ + ++  + +  +L          P Y     EP ++++L
Sbjct: 126 NLTDSVVDLVSEGFDMGIRIGE-VRDPNYVAIRLFPNRRVVCGTPAYFARHGEPRTLEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + F     +  +   W    D      ++   L  N    +  +   G GI    
Sbjct: 185 SRHNCLAF---TLQGGQQRGWTFLRDGQQVAAKVGGNLSCNDGELLFSWVCQGIGIGWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + ++       LV ++++   P + +   +P+      K++ F +++  
Sbjct: 242 TWEIQGELKRGELVTVLDEFALPEYDIQAVFPQQRFLPAKVRFFIDYLKE 291


>gi|295700491|ref|YP_003608384.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439704|gb|ADG18873.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 305

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 144/301 (47%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S +++SR ++ LE  +G +LF R +R L+LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARAMGVSVATVSRGVARLEDRLGARLFNRTSRQLSLTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     E+Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTICEKAGEIYRQAEEAESAAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +     A+P YLK  R P   
Sbjct: 126 IDLHLSDASVDLVADGFDAALRIAA-LPDSSLVARRLCAVTQFVVASPAYLKRERRPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL     +++       +  F   A  + P+       L+V +  +++   + G  IA 
Sbjct: 185 RELVGRPCLSYAYRARSDVWRFTNAAGEEEPV--MPTGPLRVTNSDALLPTLLDGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD--WK 298
           LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++      +  W+
Sbjct: 243 LPEFIAGEYLADGRLEAILTDWSLTKGGLYFVTPSARARPAKVAALSDYFAEHLSEPSWR 302

Query: 299 F 299
           +
Sbjct: 303 W 303


>gi|89072991|ref|ZP_01159538.1| hypothetical transcriptional regulator, LysR family protein
           [Photobacterium sp. SKA34]
 gi|89051209|gb|EAR56665.1| hypothetical transcriptional regulator, LysR family protein
           [Photobacterium sp. SKA34]
          Length = 304

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 122/292 (41%), Gaps = 9/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++ VF  + +  SFT AA+ L +S++ +S+ +  LE  +G++L  R  R   LTE G  
Sbjct: 6   QQMVVFNALTKQKSFTRAAQLLEISRTQVSKLVQQLEERLGVQLVQRTTRSFALTESGRI 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +    V  ++   + EL        G LR+        N +   + EF    P + ++
Sbjct: 66  FAKHCETVVDEINEAESELLIFGDSQQGSLRVGIAQSFASNHVAPYINEFHEQNPLVDLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  +D+  +  D  I           + R L        A+P YL     P    +
Sbjct: 126 LSLFDHRVDLISEQLDLWIGFMDS-PPEGFVARHLTNCDFVLVASPDYLAKHGVPYHPDD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN IT+     +  +D  W  ++       +++   +V+S  +I    + G+GI  L
Sbjct: 185 LQHHNCITY---FSRERKDNIWNFSLGNEEQHVKVTGNYRVDSADAIRDATISGNGIGYL 241

Query: 245 PDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             Y++KD      L+R+M +  +T    +Y  YP       K+  F  FI  
Sbjct: 242 ATYLLKDEIRQGKLIRLMPNWQLTQHMPLYAVYPRHKYLPSKVNLFIEFIRE 293


>gi|254788428|ref|YP_003075857.1| HTH-type transcriptional regulator YhjC [Teredinibacter turnerae
           T7901]
 gi|237685588|gb|ACR12852.1| putative HTH-type transcriptional regulator YhjC [Teredinibacter
           turnerae T7901]
          Length = 303

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 150/294 (51%), Gaps = 8/294 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+  +L++F  VA  GSFT AAE LH+++  +++ IS LE  VG++L  R  R   LT 
Sbjct: 1   MDFIRQLQIFVTVAEMGSFTRAAESLHMARPGVTKAISELEKNVGVRLLQRTTRRTNLTG 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L+   +++   ++ TQ     S  +PSG+LRI   + L ++++   L  F  LYPD
Sbjct: 61  EGEALYTKATQLLRDVDVTQNLFGGSKERPSGRLRIDIPVALAKSMVIPALPGFRSLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L ++++ ID+     DC +RL + + +SS+I R++ TI M   A+P YL     P 
Sbjct: 121 ISVILGVNDQPIDLIAKSVDCVLRLGQ-LTASSMIGRQIATIKMVVCASPEYLARKGPPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           SI+ L++H  +T      +      W    ++ I E  + S L  N   +++   +   G
Sbjct: 180 SIEALNEH--LTINYFAGQKHTPLAWFFKRNQKIEEILLPSSLMANDAEAVVACALNHMG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +P  +V +      LV+++E+       +   YP       +++ F N++ 
Sbjct: 238 LIQVPGILVAEELHQGALVQVLEEFSGIELPLSIMYPNRQYLAPQVRTFINWVI 291


>gi|241662055|ref|YP_002980415.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240864082|gb|ACS61743.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 305

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 143/300 (47%), Gaps = 9/300 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAATRLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S     +E       E    P GK+RI ++ D+G+ L+      F+  YP+I
Sbjct: 61  GQSLYQVASHALEDIERATTCAGELQDLPRGKVRITSSEDVGRLLVAPVAARFMQQYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARSLGVLRIGLFASPDYLQRRGAPDT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +Q L  H  + F        +    L   D        + L  +S + +      G+GI 
Sbjct: 180 VQGLADHCCLDFRGTGRGETQWR--LVGPDGLKTVAVRARLNADSLIYLETLIASGAGIG 237

Query: 243 LLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP Y   + + N   P LVR++ D  T    +    P A     +++   + +    R 
Sbjct: 238 PLPLYASAVARANAPLPRLVRVLPDYATSGEPINLVTPSARFVPRRVRLLIDMLTESIRQ 297


>gi|293602467|ref|ZP_06684913.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292819229|gb|EFF78264.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 307

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 127/295 (43%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F +V + G+ +  A +L L+  +IS +++ LE  +G++L  R  R +++T+
Sbjct: 1   MDALSDLAFFSLVVKHGNLSATARELGLTPPAISARLARLEQRLGVRLLNRTTRRVSVTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G         +   LE  +  +  +  +P G LR+  T   G+  +   + +F   YPD
Sbjct: 61  EGELYLAEGGRILADLEALERSVSSARAQPQGLLRLNATFGFGRAHIVPAVSDFARQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L ++ +++  +  D A+R    +  + L  RK+ +      A+P YL    EP 
Sbjct: 121 VEVLMRLTDRPLNLIEEGFDVAVRFGD-MPDARLTARKIASNRRLLCASPRYLDTYGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  I   +           L    R         +  N   S +++ + G GI
Sbjct: 180 TPGDLQRHRCIVVRENDVAYGTWR--LQAGQRAETVKVRGPVSSNDGQSALEWALDGHGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +  ++          L  ++ D  TP   ++  YPE L    K  AF  F+  +
Sbjct: 238 VMRSEWETAAYLREGRLREVLSDWRTPPADIHALYPERLNLPAKTVAFVEFLAQR 292


>gi|162148506|ref|YP_001602967.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787083|emb|CAP56671.1| putative transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 313

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 12/299 (4%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D   L        VA +G FT AA  + L+ S +SR ++ LE+ +G++LF R+AR  
Sbjct: 1   MAIDTRLLSGIETLIAVAETGGFTRAAATMGLTPSGVSRAVARLESRLGVRLFDRNARST 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLTE G +L    + +   +E        +S   SG+LR+         LL   L+ FL 
Sbjct: 61  TLTEAGHRLVAEVAPLLAGIEEATSSAAGASATVSGRLRVNCDPWFASLLLAPKLRSFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P + + L+  +   D+  +  D AIR  +P+  S LI RKL+   +   A+P Y+   
Sbjct: 121 AHPALTLDLVTRDTLGDLVSEGFDVAIRFGEPLP-SGLITRKLLEARIVTCASPAYIARH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQY 234
             P+  ++L+   H  + F D  P     F+W       I    +   L +N   + +  
Sbjct: 180 GRPIHPRDLETGTHECLLFRD--PATGRPFDWEFHRQGEILNISVRGRLILNDVATGLAA 237

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           C+ G G+A      + +   +  L+ +  D     F ++  +P       K++AF +FI
Sbjct: 238 CIAGLGVAQPMTLGIDELLRSGTLIDLFPDWCDEYFPLHVYHPSRHLPPAKVRAFLDFI 296


>gi|270261398|ref|ZP_06189671.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044882|gb|EFA17973.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 306

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 149/298 (50%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     +  F  V  +G+F+ AAE+LHL++S++ + I+ LE  +G+ LF+R+ARGL+LT
Sbjct: 1   MNDRLTGITTFVRVVEAGNFSLAAERLHLTRSAVGKSIARLEQRLGVLLFHRNARGLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   +        +L+    EL     +P G LR++    LG++ +   L   +  YP
Sbjct: 61  HEGQAYYDRCLRALSELDAADAELDNGRREPQGTLRVSAPKLLGRHCITPVLMALVGRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q+ +  +++  D++ +  D AIR+     S+++I R+L   H+   AAP YL     P
Sbjct: 121 NLQVDIAFNDRVADLAEEGFDLAIRIGPLNDSANIIARRLGGQHLALCAAPAYLAAHGNP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
            S+  LD H+ I +     +  ED  W     D    +  I   L+++   S+    V G
Sbjct: 181 QSVAALDGHSGIAYH----RFGEDVGWRQLQADAAASKLNIDIRLRLDDLHSLADAAVAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +G+  LP++++        LV +++D+      ++  +P+      K +A  + +  +
Sbjct: 237 AGLVWLPNWLLARYLRCGELVPVLDDIHLLPSDIHAVWPQTRYLPAKTRAAIDTLLDR 294


>gi|221212071|ref|ZP_03585049.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168156|gb|EEE00625.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 304

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   LRVF +VAR  SF+ AA+ L +S S +S+++  LET +GI+L +R  R +++T+ G
Sbjct: 9   ELGDLRVFCMVARKASFSAAADALAMSSSYVSKRVGMLETSLGIRLLHRSTRRVSVTDAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++    ++   +E    ++  +   P G LR++++   G+N++   L E    +P + 
Sbjct: 69  ERVYAWAEKILDDVEHLVEDVSSTRRVPRGTLRVSSSFGFGRNVVAPALAELSDRHPQLN 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I +  LI ++L T H    A+P YL     P  +
Sbjct: 129 VRLELFDRIVDVAAEGFDVDIRIGDEI-AGHLIAKQLATNHRVLCASPDYLARHGTPKQV 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +   +           L      +       L  N     +Q+ + G GI L
Sbjct: 188 DDLASHACLAIKERDHPFGVWR--LDARGETVSVQVTGPLSSNHGEVAVQWALAGRGIVL 245

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + V+   D   L R++  V  P+  V+  YP  L  + K++A   F+  + 
Sbjct: 246 RSVWDVQPLLDAGRLQRVLPGVTQPA-NVWAVYPARLAQSAKVRACVEFLKDRL 298


>gi|117620180|ref|YP_855186.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561587|gb|ABK38535.1| transcriptional regulators, LysR family [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 318

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 132/290 (45%), Gaps = 7/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + R    + AA +L +S+S IS+Q++ LETE+G +L  R  R  +LTE G + 
Sbjct: 7   QMVIFDALVREQGISAAARRLGVSKSHISKQLAQLETELGAQLVQRTTRRFSLTELGQEY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +          + E   K SG L +      G+  +   LK F   YP++++++
Sbjct: 67  ARHCRALVAVALEADSMVAERRGKVSGILHLGVGQSFGRLHVIPRLKAFQDRYPELELEV 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   ++  +  D  I   +  +  +L+ ++L  IH    A+P YL +   PL  ++L
Sbjct: 127 SLFDHRTNLVDEGLDLWITTYED-KPEALVGQRLADIHFVLVASPDYLLSHGTPLHPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN IT+     +  E +++    +R   +      +V+   ++    + G GIA + +
Sbjct: 186 AQHNCITYQSRERRYHE-WSFRQGKERQTVQV-AGNYRVDLAEAVRDAALAGLGIAYVAN 243

Query: 247 YIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           Y++     +  L+ ++          V+  Y        K++ F +F+  
Sbjct: 244 YLLDKELQSGQLIPLLPQWRPNQKMAVHAVYARREHLDPKIRLFIDFLKE 293


>gi|289679703|ref|ZP_06500593.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
          Length = 302

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 137/307 (44%), Gaps = 17/307 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A   SF+ AAE+L +  S++SR I  LE ++GI LF R  R L LTE
Sbjct: 1   MDYLAALTAFVESANGNSFSKAAERLGIKASTVSRYIKDLEQDLGIALFNRSTRKLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        +V  +L   +      +  P G+L+++      ++ +   + EF+  YPD
Sbjct: 61  GGQTFLYHAQKVLFELSEAKAATSALNQNPRGRLKVSLPPAFARHHILPLVGEFIKRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L+   +D+     D AIR+ + + +S+L  RKL  +      +P +     +P 
Sbjct: 121 ITLDLCLEESQVDLIATGIDLAIRIGR-LANSNLKARKLAEVKTFLCVSPEFAARYSQPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     +    +  +C E   W A  +  +  P  + L +N   + +     G G+
Sbjct: 180 CPDQLP----VDMMIIGRQCPEALIW-ANDNEQVSLPVGAVLWINDLDAQLIAVSSGLGM 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD++      +  LVR + D        S  V+F YP     + K++ F +FI  + 
Sbjct: 235 ALLPDWLASASLRDGRLVRWLPDWEIKTSQESGAVWFVYPPKRIVSSKVRCFIDFIAERV 294

Query: 295 RD---WK 298
            D   W+
Sbjct: 295 VDPPVWQ 301


>gi|271498906|ref|YP_003331931.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342461|gb|ACZ75226.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 298

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 139/298 (46%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++++ F VV   GS T AA QL  + S ISR +S LE ++G+ L +R  R L L+
Sbjct: 1   MKVTLEEMQAFVVVVDCGSVTAAAGQLGQTTSGISRALSRLENKLGMTLMHRTTRRLALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   +  + +E  + ++     KP G+LRI       Q+++   + EF L YP
Sbjct: 61  EEGQIFLQHARDALYAVELAEEQIALRRSKPCGRLRINAAASFMQHVIVPIIPEFRLRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+   + D AIR+ + ++ SS+  R L    +   A+P YL     P
Sbjct: 121 CISLELNSDDVIIDLLEQHTDIAIRIGE-LRDSSIHARPLGATRLRLLASPAYLNRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LS+  L  H L+ F       +         D PI       +  ++   + Q  + G G
Sbjct: 180 LSVDALAGHTLLGFTQSESLNLWPLRSAFGDDYPIS----PTIAASNGEVLRQLALSGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  L D++ +D+     LV+++ E+ +     V   Y    +   ++  F +F+  K 
Sbjct: 236 IVRLSDFMTRDDVAAGRLVQVLAEETLDRRLPVNAVYYRNTELASRIVCFLDFLSEKV 293


>gi|218680360|ref|ZP_03528257.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 894]
          Length = 299

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 134/300 (44%), Gaps = 9/300 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LRVF  VA   SFT AA++L +S +  S+ +  LE  +G +L  R +R ++LTE
Sbjct: 1   MDTLTSLRVFCTVAELKSFTAAADRLGVSPAMASKHVMQLENRLGTRLLNRTSRHVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G      T E+  +L+  +  +   +V P G L+++  +          L  +   YPD
Sbjct: 61  TGRLYFNQTREMLERLDEVEDAIGNVTVAPRGTLKLSAPVWAATGYFTDMLAAYNRRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + + L L  + +++  +  D A+R     +    L+ R L  +     A+P YL     P
Sbjct: 121 VCLDLDLSGRLVNLVDEGFDLALRATSQDRLDPGLVARPLTNVQFRLMASPDYLARTGRP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ EL+ H L+ +  +    + +   L   D P      + +  ++   +    + G G
Sbjct: 181 QNVAELNGHALLRYSGV---NLGESMSLEGPDGPHKITFRTVMLSDNETIMHLAALRGMG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +A LP ++ + +     L  ++  +    + T+Y  YP     + K++ F +F+    R+
Sbjct: 238 LAFLPAWMAEQDIEAGRLEIVLPAITLGFNSTLYAVYPSRKYLSAKVRTFIDFLTASTRE 297


>gi|307727134|ref|YP_003910347.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587659|gb|ADN61056.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 305

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 143/301 (47%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S +++SR ++ LE  +G +LF R +R L++TE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARAMGVSVATVSRGVARLEDRLGARLFNRTSRQLSVTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +     ++Y + E  +   +E SV+P G +R+A  +  G   +   L  F  +YP + 
Sbjct: 66  RTICEKAGDIYRQAEEAESAARELSVQPRGLVRLAVPMSFGLRWVAPLLPAFFRIYPQVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D A+R+   +  SSL+ R+L  +  +  A+P YL+    P   
Sbjct: 126 IDLHLSDASVDLVAEGFDAALRIAA-LPDSSLVARRLCAVTQYLVASPQYLEREGWPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL     +++       +  F   A  + P+       L+V +  +++   + G  I  
Sbjct: 185 RELVDRPCLSYAYRAGSEVWRFRNDAGEEEPV--VPTGPLRVTNSEALLPTLLDGLAIGE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD--WK 298
           LP+++  +   +  L  I+ D       +YF  P A     K++   ++      D  W+
Sbjct: 243 LPEFMAGEYLADGRLQAILTDWSLTKGGLYFVTPSARARPAKVRVLSDYFAEHLSDPTWR 302

Query: 299 F 299
           +
Sbjct: 303 W 303


>gi|123443245|ref|YP_001007219.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090206|emb|CAL13070.1| LysR family transcription regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 303

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A+ GSFT AAE+L L++S++ + +S LE  +G+KLF R  R L+LT  G K  
Sbjct: 10  ITAFVTTAQHGSFTAAAERLGLTKSAVGKSVSRLEDRLGLKLFQRSTRRLSLTPDGEKFL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE  + EL      P+G+LR+      G+  +   L +    YP++ + + 
Sbjct: 70  ASCQSAIDILELAEAELTAHITHPAGRLRVDLPAAFGRQRVLPILLDITRQYPELTLTVT 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              + +D+  +  D  IR+ +   SS L+ R+L T  +   A+P YL +  EP+  +EL 
Sbjct: 130 FSERFVDLIEEGIDLVIRIGELADSSGLVARRLTTQKLVICASPEYLLHNAEPVQPEELS 189

Query: 188 KHNL-ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H   + F    P      +    + R    P     +     +++   + G G+  LP 
Sbjct: 190 QHKCVVGFRRNQPISWLLKDNTGQIHRYTPTP---THEFADGDAMLAATLAGCGLCQLPL 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++V     +  L  ++         V   +P+  +   K++   + +   A
Sbjct: 247 WLVGKYLQSGGLKEVLIGHSGGEMPVSALWPKNRQLLPKIRYVVDELVRAA 297


>gi|319793808|ref|YP_004155448.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596271|gb|ADU37337.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 308

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 134/300 (44%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D   L    V   V   GSF  AA  L L+ S +SR I+ LE  +G++LF R  R L
Sbjct: 1   MALDGRLLSNVGVLAAVVEGGSFASAANALGLTPSGVSRAIARLEARIGVRLFDRTTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT++G  L+   + +   +E        +S    G+LR+ T     + LL  +L  FL 
Sbjct: 61  NLTDEGRLLYANVNPLVLGIEDAVTIAAGASGAVRGRLRVNTDAFTSRLLLAPHLPRFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP++ + L+  ++  D+  +  D A+R  +P  SSSL+ RKL+   +   A P YLK  
Sbjct: 121 QYPELSLDLVARDQLGDLVAEGFDIAVRFGEP-PSSSLVARKLMDTRIVTVATPAYLKRH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCV 236
             P    +L  H  +   +  P   + + W     R  +  P    L +    +I+   +
Sbjct: 180 GRPAKPADLVNHACLQVRN--PVTGQPYTWEFQRGRKLVKVPTTGRLLLTDAGTILATAL 237

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+A +    ++   D+   V +  D     F +Y  YP       K++AF +F+   
Sbjct: 238 AGVGVAQIKAVGIQQHLDSGEFVDLFPDWPDERFPLYALYPSRHLPAAKVRAFIDFVMAA 297


>gi|282600345|ref|ZP_06257559.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
 gi|282565602|gb|EFB71137.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
          Length = 303

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 145/301 (48%), Gaps = 12/301 (3%)

Query: 1   MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+  D + L +F  V  SG+FT A+E LH+++S++S+ IS LE  +G+ LF R  R   L
Sbjct: 1   MNKLDLNCLPIFIAVVESGNFTAASELLHVTRSAVSKSISRLENSLGVALFQRTTRQQVL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G  L+   S+  + L+     L+       GK+ I     LG   +   L E + LY
Sbjct: 61  TDDGMVLYEYASKALNSLQEASNFLESGKRHVEGKVCITAPRLLGNLYVIPLLIELMNLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P ++I+ +L+++ +D+  +    A+R+ K   S+ LI  ++    M   A+P YL     
Sbjct: 121 PKLEIETLLNDRKMDLQQEGIHIAVRVGKLPDSNQLIAHEIGHHKMILCASPGYLTKNGI 180

Query: 180 PLSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           P  I EL+ H LI +   G ++P  + D +    +  P      S   ++   +IM   +
Sbjct: 181 PQKISELNSHQLIAYTQVGQVLPWQLYDDHQQEYLYLP-----TSKFMMDDMQAIMSAVL 235

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP ++V+    + +L  ++ +  + S+ +   +        K++   + I  K
Sbjct: 236 QGGGIAYLPQWLVQTHIQSGSLKTVLSEYQSASYPISVVWLTTPFLPLKIRVVIDTIREK 295

Query: 294 A 294
            
Sbjct: 296 L 296


>gi|158424896|ref|YP_001526188.1| regulatory protein [Azorhizobium caulinodans ORS 571]
 gi|158331785|dbj|BAF89270.1| regulatory protein [Azorhizobium caulinodans ORS 571]
          Length = 297

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 129/293 (44%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L VF  VAR  SFT AA ++ +SQS++S  I  LE  +G++L  R  R ++ TE G
Sbjct: 5   NVNDLLVFLAVARERSFTRAAAKMGVSQSALSHTIRQLEARLGVRLLTRTTRAVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E     L +   KP+G +RI+       ++L   LK FL  +PDI+
Sbjct: 65  ERLLAGIGPHFDEIEAQVDALNDLRDKPAGTIRISAPDFAISSVLWPKLKAFLPQFPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ +N   DI  +  D  +R+   +    +  R           +  Y  +  EP + 
Sbjct: 125 VELLQENGLTDIVTERYDAGVRMGDQLAKDMISARIGPDFRFAVVGSKSYFASRPEPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L +H+ I +       +  ++      R         L  N+  + +   V G G+A 
Sbjct: 185 QDLVQHSCINYRFPTSGGLWAWD-FEEEGREFKIRVEGQLVFNNIFNALDAAVAGFGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +P+ +   +     LVR++E         Y  YP   +++    A    +  +
Sbjct: 244 VPEELAIPHLAKGRLVRVLERWSPYWDGYYLYYPSRRQSSPAFVALVEALRHR 296


>gi|239834604|ref|ZP_04682932.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239822667|gb|EEQ94236.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 304

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  R+F  V    SFT AA+ L + +SS+S  +  LE  +G +L +R  R ++ T+
Sbjct: 1   MDRIDLFRIFARVVECSSFTRAADTLGVPRSSVSAAVLELEGRLGARLLHRTTRSVSTTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E  +   + +   PSG LRI     +G+ ++   L EFL  YP+
Sbjct: 61  DGAAFYERCLSLIADMEEAENLFRNT-ATPSGTLRIDVPGRIGRLIIAPALPEFLDAYPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L + ++ +++  +  DC +R+  P+  S LI R L  + +   A+P YL+    P 
Sbjct: 120 IDIHLGVTDRAVNLVEESVDCVLRVG-PLTDSGLIARSLGELPLINVASPAYLERYGIPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I +       +E + W +        P    + VNS  + +  C+ G G+
Sbjct: 179 TPHDLSAHWAINYASPSSGRVEPWEW-SEAGATRSIPVRGRVTVNSAEAYIACCLAGLGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V+ +     L+ +M D+      + F Y      + +L+ F +++
Sbjct: 238 IQIPAYDVRRHLEAGELIEVMADMRAAPMRMTFLYSHRQHLSRRLQVFADWL 289


>gi|237729614|ref|ZP_04560095.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226908220|gb|EEH94138.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 298

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 128/294 (43%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  SGSFT AA +L +S   + + I+ LE ++G +L  R+ R  +LT+
Sbjct: 1   MDKLRGMETFVAVVESGSFTSAATRLEMSAVMVGKYINQLEAQLGTRLLERNTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  ++   +  ++   + P+G LRI+     G  ++      FL  +P+
Sbjct: 61  AGRVYFEEARRVLEQVSIAERSVERLRLAPAGTLRISAPTSFGACVISPLAAAFLQTWPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L L N+ +D+  +  D AIR+   I  + ++ + L    M   A+P YL     P 
Sbjct: 121 VRIELDLTNRMVDLVNEGVDLAIRIGD-IHQTDVVAKYLCPYRMAICASPDYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  ++      +       L  V   +   R + L+ N    +    V G+G+
Sbjct: 180 TPADLVDHLCLSHTVWTARNEW---ILPGVTGEVRWKRDAILRCNDGHGLRMAAVAGAGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            L P+ ++        L+RI+E        ++  + + L+   KL  F   +  
Sbjct: 237 LLQPEVLLAQELATGKLIRILEGFTPQPRPIHLLWRQDLRPLPKLTRFVEHVLE 290


>gi|91777469|ref|YP_552677.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690129|gb|ABE33327.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 299

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 130/286 (45%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF+ AA +L L Q ++S+ I+ LE  +G +L  R  RGLT T+ G + +
Sbjct: 7   MEAFVTVVDAGSFSAAARRLKLGQPAVSKSIAQLEEHLGARLLLRSTRGLTPTDAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   + +  +  ++ESS   SG+LRI   +   +  +   LK FL  +P + I LI
Sbjct: 67  EHARRAIDEADQAEQAVRESSGGLSGRLRIGAAVTFARLHVLPALKTFLDQHPKLSIDLI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ ID+     D A+R+   +  S++  +++V         P Y      P +  +L 
Sbjct: 127 LDDRSIDLLEQGVDVALRMG-TLDDSTMTAKRIVRGRRLVVGTPQYFAQAGIPTTPADLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I +   +    E +++       I       + V++   +    +   G+A+  ++
Sbjct: 186 RHQAIVYS--LRGGGESWSFSRDDGAEIAVAVTGRVSVSAAEGMRTAVLGHVGLAVASEW 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +      +  +  ++ +   PS  V+  +P     T K +AF  F+
Sbjct: 244 MFSPELADGTVQAVLTEWTLPSIDVWAVFPSGRMATTKARAFVAFV 289


>gi|330991203|ref|ZP_08315155.1| putative HTH-type transcriptional regulator ltrA [Gluconacetobacter
           sp. SXCC-1]
 gi|329761696|gb|EGG78188.1| putative HTH-type transcriptional regulator ltrA [Gluconacetobacter
           sp. SXCC-1]
          Length = 298

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 123/295 (41%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      L  F  VA +GSF+  + +   SQ +ISR I+ LE   G  LF R  R L +T
Sbjct: 1   MDL-LSALHSFVRVAATGSFSAVSRETGASQPTISRHIALLEAHYGATLFARTTRSLMMT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L     EV   LET +  L       SG +R+  T   G   L   L   L  +P
Sbjct: 60  EDGRSLLPHAYEVLEILETAETALGRRRASVSGLVRLGVTTAFGLY-LTSRLGSLLEEHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L++ +   D+  +  D A+R+   I   SLI R+L ++H    A+  YL     P
Sbjct: 119 DLSVELVMRDGFGDLVEEGLDLAVRIGS-IAEGSLIARRLGSVHRCVIASTDYLARRGTP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  I +         D+ +    +           + NS  +++Q    G G
Sbjct: 178 EHPRDLLNHPCIAYS--YGGTRHDWQFTRKGEGETAVAASGPFRANSSEAVLQAVRAGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I +LP + V+D+     L  ++ +   P    Y  +        + +   +F+  
Sbjct: 236 IGMLPAFQVEDDIASGKLRHLLPEWTIPELPFYAVHTGPRTLPLRTRTVLDFLIE 290


>gi|71737267|ref|YP_274637.1| LysR protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557820|gb|AAZ37031.1| LysR protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 310

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 142/297 (47%), Gaps = 11/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLL-RTTRKVNVTA 59

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L +++  P G+LR+         LL   L  F   YPD
Sbjct: 60  DGAAYYERVVRLLADMDDAETSLSDATSLPRGRLRVDVPRPFASMLLMPALPGFHARYPD 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI + + ++ +D+  +  DC +R    I   SLI R++  + +  YAAP+YL     P+
Sbjct: 120 IQIDMGVSDRIVDMIGENVDCVVR-GGEITDQSLIARRVGDLQLGVYAAPYYLTRMGTPV 178

Query: 182 SIQELDK--HNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLG 238
             +EL+   H ++ +  L  +  +   +    D   +       L V+   + +   + G
Sbjct: 179 HPRELEDSAHRIVGY--LWARTSKALPYAMHRDGEKVHVQGRYALAVDDGNAYIAAGLAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  LPDY+ + +    +L+ + +D    S  +Y  +P     + K++ F ++I  
Sbjct: 237 MGILWLPDYMARQHQVRGDLIPLFKDWQLDSMPMYVAFPPNRHISIKVRVFIDWITE 293


>gi|110635382|ref|YP_675590.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286366|gb|ABG64425.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 311

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 145/295 (49%), Gaps = 8/295 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V  +GSF+ AA  L ++ S++S+ IS +E  +G++L  R  R L+LT +G   
Sbjct: 7   EMQVFLRVVETGSFSEAARLLRMTPSTVSKLISRVEARLGVRLVERSTRRLSLTTEGQIY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H  +  +  +L+  + EL   +    G +R+  ++  G   L+  L EF   YP+I + L
Sbjct: 67  HERSRALLQELDLLERELSYGAAATDGTVRVNASVAFGVLGLEPLLPEFWRAYPNIVVDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+ +D  D A R+  P+  S ++ R++        A+P YL  C  P  +++L
Sbjct: 127 SLSDEIVDLYLDRTDIAFRVG-PLPDSGMMARRIGVARRKIVASPSYLGRCGTPRKVEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + F       +     L    R +       L  N+  ++ +  + G G+A + D
Sbjct: 186 SRHNCLGFNFRRAAPVWP---LKESGRTVDRVVNGSLLANNGETVRRMALAGVGLARMGD 242

Query: 247 YIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           Y V+ +     LV ++ D V +    V+  +   L+   +++ F +F+  + + +
Sbjct: 243 YHVRADLAAGRLVEVLTDAVESDEEEVHAVFLGGLRMPQRVRVFLDFVVPRLQQF 297


>gi|237798868|ref|ZP_04587329.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021722|gb|EGI01779.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 297

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 125/288 (43%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +  TE G 
Sbjct: 6   LNDLQAFLLVAREQSFTKAATKLGVTPSALSHTLRALEERMGLRLLARTTRNVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI
Sbjct: 66  QLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q
Sbjct: 126 EICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I            + W    D R +          NS + ++   + G G+A 
Sbjct: 186 DLTQHTCINIRHSPNGSC--YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +PD + + +     L  ++ D        +  YP   + +    AF  
Sbjct: 244 VPDSLAQPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVE 291


>gi|254523576|ref|ZP_05135631.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721167|gb|EED39692.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 285

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 128/287 (44%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  VA  GSFT AAEQL +S   + + I  LE  +G  L  R+ R   LTE GS   
Sbjct: 1   MQAFVAVAERGSFTCAAEQLQVSAVMVGKYIQQLEAHLGTALLQRNTRRQRLTEAGSAYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V  +++  + ++    V+P G LR++     G  +L  +L   L   P + I+L 
Sbjct: 61  AGCRQVLEQVQQAEADVAGLQVQPRGLLRVSAPSTWGSCVLAPHLAALLRAQPQLNIELD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D+  D  D AIR+  P+ S  ++ R L    M   AAP YL+    P +  +L 
Sbjct: 121 LSNRRVDLIEDGFDVAIRVG-PLPSQEVVARPLPPYAMSLCAAPSYLRRRGTPRTPADLQ 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ ++                 VD        + L  N  +++ +  V G+G+ L P  
Sbjct: 180 EHDCLSHLAWRGGHGWQLANGEQVDWE------ARLTCNDGVALREAAVAGAGLVLQPTA 233

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++        L  ++ D +     ++  Y    +   +L+ F +F+ 
Sbjct: 234 LLAGEIAAGRLKPLLRDYLPEPRPMHLIYLPDRRPRPRLQCFVDFVM 280


>gi|330877683|gb|EGH11832.1| LysR protein [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 305

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  +GSFT AA  +H+S++S+++ +  LE  + ++L  R  R + +T  G+  +
Sbjct: 1   MQAFARVVETGSFTKAAGTMHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGAVYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +  L  ++  P G+LR+     L   LL   +  F   YPDIQI + 
Sbjct: 61  ERVVRLLADMDDAETSLSSAASLPRGRLRVDVPSPLASMLLMPAMPAFHARYPDIQIDMG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DC +R    I   SL+ R +  + +  YAAP YL+    P    +L+
Sbjct: 121 VSDRIVDLIGENVDCVVR-GGEITDQSLMARHVGDLQLGVYAAPGYLQRMGTPAHPLDLE 179

Query: 188 K--HNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALL 244
              H ++ +  L  +  +   +    D      +    L V+   + +   + G GI  L
Sbjct: 180 NSSHRIVGY--LWARTGKALPYAMHRDGEQVRVQGRYTLTVDDGNAYIAAGLAGMGILWL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PDY+ +      +LV + +D    S  +Y  +P     + K++ F +++  
Sbjct: 238 PDYMARPYLARGDLVPLFQDWQLDSMPMYVAFPPNRHVSIKVRVFIDWVIE 288


>gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074243|gb|ADJ63642.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 303

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 126/295 (42%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GSF  AAE L +S +  +R I+ LE  +G +L  R  R L+LTE
Sbjct: 1   MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +++  +  +   + +P+G L I      GQ+ L   L  +   YP+
Sbjct: 61  AGQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + L  + ID+  +  D           +S+I R+L    +    +P Y+     P 
Sbjct: 121 VALDISLSERSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCTSPAYIARQGAPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +HN + F     +     N   T    +  P +S +  NS + +    + G GI
Sbjct: 181 QPEDLSRHNCLNFSHEYLRHHWHVN---TNGGVLDVPIVSKVVSNSGVLLRDLALAGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L P Y + D+     LV+++         +   YP     + K+++F  FI  +
Sbjct: 238 VLRPSYSLGDDLRSGRLVQVLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFISAR 292


>gi|271501383|ref|YP_003334408.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344938|gb|ACZ77703.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 297

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F  VAR  SFT AA +L +SQS++S  +  LE+ + I+L  R  R +  TE G
Sbjct: 5   NFNELQLFLAVARERSFTRAAAKLGISQSALSHAMKALESRLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE    +L + +   +G +RI+      ++L+   LK FL  Y +I 
Sbjct: 65  ERIITCLEPRLAELEQELEQLVQLNGIAAGNIRISAGEHAAKSLVWPKLKPFLREYSEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  IDI     D  +RL + +    +  R    + +    +P Y      P + 
Sbjct: 125 VELVVDNGFIDIVEGRFDAGVRLGESLDKDMVAVRIGPDLRLVVVGSPDYFARYGVPDTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I     +P     ++W    D +P+       L  N     +     G G++
Sbjct: 185 HDLQHHRCINM--RLPTMGGLYHWEFEKDGKPLQVKVDGQLTFNHLSERIDAAESGFGLS 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V+   ++  L+ ++ +        Y  YP   ++        + +
Sbjct: 243 FVPEDTVQSQLESGTLIEVLHEWSPLFPGYYLYYPSRKQHPPAFALLIDAL 293


>gi|116695723|ref|YP_841299.1| transcriptional regulator [Ralstonia eutropha H16]
 gi|113530222|emb|CAJ96569.1| transcriptional regulator [Ralstonia eutropha H16]
          Length = 339

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 133/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRV-----FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L++     F + A  GSFT AA    ++  ++SR +  LE  +G++LF R  R
Sbjct: 37  MKRQFDDLQLGSIELFCLAAELGSFTAAAVAAGVTPPAVSRTVQRLEERLGVRLFVRTTR 96

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT++G      +     +L   + ++      P+G+LRI+         +   L  F
Sbjct: 97  QIRLTDEGRVYFEQSRGALAQLVDAERQISGQQAAPAGRLRISLPTPYAHYRVLPVLPAF 156

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP+++I + + N+++D + D  D ++R R P   S+LI RKL    +   A P YL+
Sbjct: 157 RERYPEVEIDVHISNRNVDFADDTYDLSVRGRAP-DDSNLIARKLEDAELVVVATPGYLR 215

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P S+++L +H  I F          + +    +        S       L      
Sbjct: 216 RAGTPQSLEDLLRHECIQFERPSSGRRIPWTFRVNGEDTDIVTAGSYAASEDILGGATLV 275

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G+G+     ++V+    +  LV +++D    +      YP A   + +++AF +F+  
Sbjct: 276 RAGAGLFQTYRFVVEQDLRDGTLVEVLKDYGGSTRPFVLLYPSARHVSRRVRAFVDFLVE 335

Query: 293 K 293
           K
Sbjct: 336 K 336


>gi|28900861|ref|NP_800516.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260879228|ref|ZP_05891583.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|28809307|dbj|BAC62349.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308094076|gb|EFO43771.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
          Length = 300

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 144/301 (47%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D   +FY +   GSF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G
Sbjct: 3   NTDDYIIFYHLVEQGSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    VY  + T +  +       SG ++I      G+ +L G + EF   YPDI 
Sbjct: 63  QSFFVHAKAVYKAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDIN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P   
Sbjct: 123 IDMELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL KHN + +        E        D+         L  N+  ++    +LG G+  
Sbjct: 182 IELTKHNCLVYSYQETGAREWA--FKAGDKMYQVTVDGNLCTNNSSALRNVALLGQGVIY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWK 298
           +P  +V ++    +L+++ ++       +Y  YP   +   K+K F + ++   ++++ +
Sbjct: 240 VPRVLVYEDLKQGSLIQLFKEETAKCLGIYAVYPYTRQQPEKIKIFIDHLYNSFQSQNHR 299

Query: 299 F 299
           F
Sbjct: 300 F 300


>gi|167590777|ref|ZP_02383165.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 305

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 134/290 (46%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GS T A++   L+   +S  +S LE  +G +L  R  R + LTE G   +
Sbjct: 7   MRVFTRIVETGSLTRASDTTGLTTPRVSALLSTLEQHLGCRLLNRTTRRIALTEDGRAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  + ++   P G+L++     + + ++   L  FL  +P I I+L 
Sbjct: 67  ERCVAVLREIDDMEASVSQARNAPRGRLKVNLPPAMAKQIMVPALPAFLAAHPSITIELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S LI +++ ++     A+P YL+   EP ++++L 
Sbjct: 127 VTDRQIDLVGEGVDCVVRVGA-LDDSGLIAKRIGSLTTCTCASPAYLERFGEPETVEDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  +    +         W   VD   GEPR+      + VN   + +   V G G+  
Sbjct: 186 QH--VAVSHISADTGRPRAWEYIVD---GEPRVMQMCGTVAVNDADTYIACGVAGIGLIK 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              Y+V     +  L  ++    TP+  +   YP       KLK F +++
Sbjct: 241 TSLYLVDPYLKSGELREVLTGFNTPARPISVLYPPNRHVPAKLKLFVDWL 290


>gi|53719562|ref|YP_108548.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|167816079|ref|ZP_02447759.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|52209976|emb|CAH35949.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
          Length = 301

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGEQPR-----VEWRFDGSHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W++
Sbjct: 239 KSIWDVGPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 298


>gi|330957610|gb|EGH57870.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 302

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 9/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA +GSFT AAE+L+L+ S++S+ ++ LE  +G++LF R  R L LTE+G+
Sbjct: 7   LKGIETFVAVANAGSFTAAAERLNLTNSALSKSVARLENRLGMRLFERTTRSLALTEEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             + V + +  +LE  +  L     +P+G+LRI      G+  +   + EF   +P ++ 
Sbjct: 67  AYYVVCTRMLAELEDAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILEFAGQHPKLRP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   ++ +D+  D  D A+R+    +  + +  R L T  +   AAP YL     P + 
Sbjct: 127 RVTFTDRFVDLLEDGIDLAVRIGGSQVWPAGVAHRYLGTERVIFCAAPAYLHRHGTPETF 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           ++L  H  I FG           WL   D+   E R   + L + +  + +       GI
Sbjct: 187 EDLADHACILFG---RGDGSSSPWLFVDDQGQAEARAVEARLVIGNGEAQVAAVKSAWGI 243

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L  +++KD      LV I+  + T    ++  +P + ++  K++A    +
Sbjct: 244 AQLATWLIKDQLQRGELVEILPQLATEGLALHLAWPRSRESLPKVQALVERL 295


>gi|307727526|ref|YP_003910739.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588051|gb|ADN61448.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 304

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 138/285 (48%), Gaps = 7/285 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A +G FT AAE+L+L+ S++S+ ++ LE  +G+ LF R  R L+LT+ G   +   
Sbjct: 15  FVCAADAGGFTAAAERLNLTSSAVSKSVARLERRLGVVLFERTTRSLSLTDAGRAFYETC 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  +L   +  L     +P G +R+A     G+  +   L  F   YPD++ QL+  +
Sbjct: 75  TRILAELAEAEAILAAQKREPVGTVRVALPASFGRLCVVPVLVRFSAQYPDVRPQLLFTD 134

Query: 131 KDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  D  D A+R+  P +  +SL QR L    +   AAP YL+    P +I +L++H
Sbjct: 135 RFVDLVEDGVDLAVRIGGPSVLPASLGQRFLGRERLIFCAAPAYLEKNGMPQTIDDLEEH 194

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             + +G   P   +     A  D  +G+      +      + + +   G GIA L  ++
Sbjct: 195 ACVVYGR--PDGEQSPWSYAVADGQVGQCIVRPRIVAGDAEAQLAFVRAGLGIAQLATWL 252

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V+D+     LV I+++  T    +   +P A + T K+      +
Sbjct: 253 VRDDLKAGRLVTILDEAATDGLPLSLLWPVARQLTPKVHVLVEML 297


>gi|85060105|ref|YP_455807.1| transcriptional regulator [Sodalis glossinidius str. 'morsitans']
 gi|84780625|dbj|BAE75402.1| transcriptional regulator [Sodalis glossinidius str. 'morsitans']
          Length = 307

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  V    SFT A   L L +S+++  I  LE  +G  L +R  R +T T+ G  L+
Sbjct: 7   LQSFVWVVELASFTQAGNTLGLPKSTVAEHIQTLEGVLGACLLHRTTRRVTPTQDGLVLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   +E      ++    P G+LR+       +  +   L EFL  +P IQ+++ 
Sbjct: 67  DRARDVLASMEELDGLFRQQGPVPDGRLRVDMPTAFARLEVFPRLGEFLQAHPAIQVEIS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D+     DC +R+ + +   +L+ R+L  + M  YA+P YL+    P++  +LD
Sbjct: 127 CTDRRGDVVRKGFDCVVRIGQ-LNDDNLVARRLGKLRMINYASPAYLRAYGVPVTPADLD 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H LI +  ++    E F +     R +       + VN+  +    C+ G GI  +P  
Sbjct: 186 RHVLIDYVQVLGSQSEGFVYQQH-GRMVSRQMPVRVTVNNADAYEAACLNGLGIIQVP-- 242

Query: 248 IVK-----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +      +  LV I+   + P   +   Y        ++K F +++
Sbjct: 243 VARYIGLFTSGQLVEILPYYLPPPMDITLLYAHRRHLPPRVKVFIDWL 290


>gi|294139953|ref|YP_003555931.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293326422|dbj|BAJ01153.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 299

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 89/299 (29%), Positives = 151/299 (50%), Gaps = 14/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++++VF+ V  SGSF+ AA+ LH++ SSI+R I  LE ++   LF R  R L LTE+GS
Sbjct: 2   LEQIKVFHQVVDSGSFSQAAQVLHMAPSSIARNIDSLEAQLKTTLFKRSTRQLILTEEGS 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++ + ++    +    E++ +   P G LRI+     G   L   + EFL +YPD+Q+
Sbjct: 62  YFYKQSGKLVEDADILLAEMRGAQDTPQGLLRISVFESFGNLCLAPIIPEFLQMYPDVQV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L LDNK +D+  D  D AIR+  P Q S L  RKL+       A+P Y++  +      
Sbjct: 122 DLDLDNKLVDLHSDNVDLAIRIGVP-QDSGLKARKLLENRTLLTASPIYVEQHKTITQPS 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +HN +    LI +  +  +W     +   +  ++  L       ++   + G G+ L
Sbjct: 181 DLGEHNCL----LISQERQRNHWYFNKGKSKRKVSVTGNLISKGGSPLLIAALKGCGVLL 236

Query: 244 LPDYIVK---DNPNLVRIMEDVIT-----PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L +++VK   ++ +LV I+ D         S  +Y  Y +A      ++AF +F+  K 
Sbjct: 237 LSEWMVKPYLESKDLVAILPDWTVNHRENGSGEIYAIYKDAQYPKPHIRAFLDFMVNKL 295


>gi|78066545|ref|YP_369314.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967290|gb|ABB08670.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 313

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 123/299 (41%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 12  PLDLLDVALFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 72  DGEVFMAHADTLLSAADAARASVGHGRTEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPS 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  D  D AIRL   ++ S+L+ RKL         +P YL     P 
Sbjct: 132 VSLDLRLSDEIVDLVDDGYDVAIRLGA-LKDSTLVARKLAANRRVLCCSPAYLAEHGTPR 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +  GD             T   P+       L  ++  +I +  V G GI
Sbjct: 191 HPADLAQHECVILGDQRDWS------FTTPQGPLTVRVGGRLVASNGEAIREALVDGFGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     +  LV +++D        ++  YP       K  AF  F+     D
Sbjct: 245 AIKSTWDVGPLLASGALVTVLDDYPFAEDIAIWAVYPSRAHVPLKTLAFIAFMAEHFGD 303


>gi|83749827|ref|ZP_00946798.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207743205|ref|YP_002259597.1| hypothetical protein RSIPO_01372 [Ralstonia solanacearum IPO1609]
 gi|83723507|gb|EAP70714.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206594602|emb|CAQ61529.1| hypothetical protein RSIPO_01372 [Ralstonia solanacearum IPO1609]
          Length = 300

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 129/290 (44%), Gaps = 6/290 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS T AA+ L +S++ ++R ++ +ET  G +L +R  R + LT  G     
Sbjct: 8   EVFVAIVDRGSLTAAADALDMSRAMVTRYLAQMETWSGARLLHRTTRRIGLTPAGEATLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++        +     +  P G LR+A    L Q +L   +  +L  YPD  I L++
Sbjct: 68  RCRQMLEIAGQMPVSAGPETDTPRGLLRVACAQVLAQQVLGEAVTAYLRRYPDTAIDLVV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           DN+ +++  +  D A+R+   +   +LI R L T      AAP YL     P  +++L  
Sbjct: 128 DNRTVNLVEERIDLAVRITNDL-DPNLIARPLGTCESVVCAAPAYLAAHGTPRRVEDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K +  F   A    P   P    L  N  ++++     G+GI + P + 
Sbjct: 187 HNCLTYS-YFGKSLWRFT-EARTGEPAVVPVGGNLSANESMALLAAVKAGAGIGMQPAFA 244

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                 +  LVR++ D +  +  ++  Y    +    L+A  +F+    R
Sbjct: 245 AAPLIASGQLVRLLPDHVPQALGIHGVYSSRRQMPAALRAMLDFLAEWFR 294


>gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300075119|gb|ADJ64518.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 129/293 (44%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA  GS + AA    ++ + I R++  LE  +G+KL  R  R + LT 
Sbjct: 1   MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +   LE  +  + E S + SG+L I+     G+  +   L  FL  + D
Sbjct: 61  EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L+++  D+  +  D AIR+   +  S+L+  KL   H    AAP YL+    P 
Sbjct: 121 VTLTLNLNDRIADVIGEGIDVAIRIA-TLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S  EL +HN +              W       +   ++   +  N    +  + + G G
Sbjct: 180 SPDELMRHNCLAMSSE----GSQRGWTLRQSGKVSVYKVGGNMVCNDGEVLHNWALAGRG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V    +   LV +++    P+ ++Y  + +      +++AF +F+
Sbjct: 236 LAWRSMWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFL 288


>gi|296100376|ref|YP_003610522.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295054835|gb|ADF59573.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 315

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 137/297 (46%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     + VF     +GSF  AA +LHLS+S++ + I+ LE  +G++LF+R  R  +LT
Sbjct: 1   MTSTLKDIPVFVAAVEAGSFAQAAIRLHLSRSAVGKSIARLEERLGVRLFHRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+  +        ++   +  L+    + SG+LR+A  +  G+  +   L E    +P
Sbjct: 61  DNGALFYERCLRALEEIRGAESLLETGKQQISGRLRVAMPVLFGRQCVAPLLIELAQEHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++   ++ +D+  +  D A+R      SS L+ R+L    M   AAP YL+   +P
Sbjct: 121 GLELEMSFSDRVVDLVEEGFDMAVRNGTLQDSSVLVVRRLGEHRMVLCAAPEYLQKSGQP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H  I +  L    +  +  +    R       S L ++   +I    + G G
Sbjct: 181 DTVADLPHHTAINY--LRAGRVLPWQLMDNEGRSHTFTPRSSLNMDDLQAICDAALAGYG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP ++ +       L+ +++      F V+  + +      +++   + +  + 
Sbjct: 239 IAWLPCWMARREIQQGKLIPLLKQAPDVRFDVHAVWQQTPHLPLRVRIAIDTLASRL 295


>gi|330971067|gb|EGH71133.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 297

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 4/287 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G 
Sbjct: 6   LNDLQAFLQVARDQSFTKAATELGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQ+
Sbjct: 66  RLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q
Sbjct: 126 EICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I            +       R +          NS + ++   + G G+A +
Sbjct: 186 DLTQHTCINIRHSPNGSCYAWE-FEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAYV 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           PD + + +     L  ++ D        +  YP   + +    AF  
Sbjct: 245 PDSMAEPHIASGRLREVLVDWSPYFEGFHLYYPNRRQASPAFSAFVE 291


>gi|146307045|ref|YP_001187510.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575246|gb|ABP84778.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 308

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 138/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AA  LH+S++S+++ I  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTQAAATLHMSKTSVTQLIQQLEARLRVRLLNRTTRKVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  +++ P G+LR+     L + LL   L  F   YP+
Sbjct: 61  DGAAYYERVVRLLADMDDAETSLSSAALAPRGRLRVDVPSPLARMLLIPALPAFYERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +DI  +  DC +R    I   SL+ R +  + +  YA P YL+    P 
Sbjct: 121 IQLTMGVSDRIVDIIGENVDCVVR-GGEITDQSLVARHIGDLQLGIYATPGYLQRAGTPG 179

Query: 182 SIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL +  H+ + F          +      +R   + R   L V+   + +   + G 
Sbjct: 180 HPRELGEGAHSTVGFLWSRTGKALPYAMQRGEERIEAQGR-PLLTVDDGNAYLAAGLAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+  LP Y+ + +     LVR+ +D       +Y  +P     + KL+ F +++ 
Sbjct: 239 GMLWLPHYMARPHLASGELVRLFDDWQMTPMPMYLAFPPNRHVSAKLRVFIDWVV 293


>gi|37526532|ref|NP_929876.1| hypothetical protein plu2641 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785963|emb|CAE15015.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 295

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 130/295 (44%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF   A + SFT A +QL +S S++S+ I  LE  +GI+LF+R  R +TLT 
Sbjct: 1   MDSLGSLNVFVRAADARSFTVAGQQLGISSSAVSKAIVRLEERLGIRLFHRSTRTVTLTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  ++E  + EL +    PSGKL+I+        L       F  LYP+
Sbjct: 61  EGTLFFERCKRILDEVEAAETELSQMQKMPSGKLKISLPS--VGMLFMPKFAAFTRLYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  D  +R   P + S L+ R L +       +P Y      P 
Sbjct: 119 IKLDISCSDRIVDVIEEGFDAVLRTGDP-RDSRLMSRMLGSYRQVIVGSPAYFAAAGFPE 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             ++L  H  + +    P   +   W    D    E  + C +  +S    + +   G G
Sbjct: 178 EPEDLVSHPCLLY--RFPTNGKLNVWPLNRDGKKIELNLPCNMVTDSLEPQVCFAEHGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA +P+  V       +LV I++     S      +P +   + K++ F +F+  
Sbjct: 236 IACVPNIAVYRQLKEGSLVTILDKYNESSTIFRILWPSSRHLSPKVRVFVDFMAE 290


>gi|71733730|ref|YP_273003.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554283|gb|AAZ33494.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 310

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 143/301 (47%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGS + AAE++  + S +SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  ++E+ +  L  S   P+G+LRI        + +  ++ EF   YP
Sbjct: 61  EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  ID+     D AIR+   +  S+L  R L +  ++  A+P YL+    P
Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRIG-VLPDSTLHARSLGSCLLNIVASPAYLQRHGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L +H L+ F  +           A  DR   +P IS    +S  ++    + G G
Sbjct: 180 KTAEDLAQHVLVGFTHVESLNQWPLRH-AEGDRLSIKPVISA---SSGDTLRHLVLEGVG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L D++  D+     LV +++   +     ++  Y    +   +++ F +F+  K   
Sbjct: 236 IACLSDFMTNDDLREGRLVCLLKGANSGYRQPIHAVYYRNSRLALRIQCFLDFMQEKLAG 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|110636229|ref|YP_676437.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110287213|gb|ABG65272.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 295

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 130/295 (44%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR  SFT AA +L +S S++S+ +  LE  +GI+L  R  R +  TE G
Sbjct: 3   NLNDLAAFGAVARERSFTRAAAKLRVSPSALSQTVKNLEERLGIRLLTRTTRSVAPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +  + +++     L E   KP+G +RI        +LLQ  LK FL  YPDIQ
Sbjct: 63  ERLLRTITPRFEEIDAELAALSELRDKPAGTVRITAGEHPAISLLQPALKRFLPEYPDIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+D    DI  +  D  +R+ + +    +       + M   A+P Y      P + 
Sbjct: 123 VEIIIDYGLTDIVAEGFDAGVRMGEQVAKDMIAVPIGPDMRMAVVASPAYFDQHPIPKTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q++  H  I     +P     F+W L    R +       L  NS    +   + G G+A
Sbjct: 183 QDMTVHKCI--NTRLPTYGGVFSWGLEKKGREVKVRGEGQLIFNSLAMRLSSALDGLGVA 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +P+        +  L+R++ED        +  YP   + +         +  +A
Sbjct: 241 YMPEDQALPYIADGRLIRVLEDWCPGFPGYHLYYPSRRQQSPAFSVLMEALRYRA 295


>gi|134282217|ref|ZP_01768922.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|134246255|gb|EBA46344.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 301

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LVDSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W     RP      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGEQPR-----VEWRFDGPRPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W++
Sbjct: 239 KSIWDVGPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 298


>gi|116051120|ref|YP_790049.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586341|gb|ABJ12356.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 303

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 134/293 (45%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  SG F+ AA +  ++ S++S+ I+ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCTF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   LE  +      +  P G+LR+   +  G + L   + EFL  +P++ + +
Sbjct: 71  YERGVRILADLEEAER-CASENAAPRGRLRVNANVPFGHHFLLPLVPEFLAQHPEVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +DI     D A+R   P++SSSL+ RKL +  M    AP YL     P + Q L
Sbjct: 130 VLTDEVVDILEQRTDVAVRAG-PLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQAL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +    +  +       L      +  P     Q +   ++ +  V G G+A L  
Sbjct: 189 LGHNRLGANYVRTRSGWP---LRDAGEELVVPLSGNAQASDGEALRRLAVAGLGLARLAA 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKA 294
           + V+++     L+ ++E         V+  Y  +      +++AF NF+  + 
Sbjct: 246 FQVREDIAAGRLIPVLEAYNPGDLEEVHAVYVGQGGYLPLRVRAFLNFLAERV 298


>gi|322831639|ref|YP_004211666.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166840|gb|ADW72539.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 298

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 146/298 (48%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  SGSF+ AAEQL    S +SR +  LE ++GI L  R  R ++LT
Sbjct: 1   MRASSEELITFVTVVESGSFSRAAEQLGQDNSVVSRTLKRLEQKLGITLLNRTTRQISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +      ++ H++   + +L E+   P G LRI     +  +++   + EF   +P
Sbjct: 61  HEGERYFVRVQKILHEMAAAEDDLLENRDDPQGLLRIDAATPVILHVISPLVAEFTERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L     +I++     D AIR+ + ++ SSL  RKL+  +    A+P YLK    P
Sbjct: 121 KMSLALFSSESNINLIDHKVDVAIRVGE-LEDSSLRARKLMLSYRSVLASPDYLKKWGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  +L KH  + F +++   +  +  L    + +       +   S  ++ + C+ G+G
Sbjct: 180 QSADDLLKHRCLGFNEVV--ALNKWPLLCADGQQLTV--TPFISSGSGETLRRLCLQGNG 235

Query: 241 IALLPDYIVKDN---PNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++  ++    +LV+++  D++  +  ++  Y      + +++ F +F+  K 
Sbjct: 236 IACLSDFMTDEDVARGDLVKLLVPDIMRIAMPLHAVYYSDQTVSTRIRCFIDFLSEKL 293


>gi|307730208|ref|YP_003907432.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584743|gb|ADN58141.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 312

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 18/312 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELQVFVSVIDSGSITAAAEKLGQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGEGFLQRARAILDAMEEAEESVTLKRRRPSGRLRVDAASPFMLHCIAPHMTAFSELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  + + +D+     D AIR+   +Q S+L  R L    +   A+P YL    EP
Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRIGA-LQDSTLHARALGRSKLRVVASPAYLAAHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-------------LQVNS 227
            ++  L  H LI F                  R  GE   S              +  +S
Sbjct: 180 KTVDALRGHRLIGFTAPEHLNRWPLRERGGHKRTNGERSSSAAGRKPEPWKIEPSITASS 239

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKL 283
             ++ Q  + G GIA L D++      +  LV I+   +      V   Y ++    G++
Sbjct: 240 GETLRQLALAGWGIACLADFMTAADIRDGRLVPILGGALLDERQPVSAVYYQSASLAGRV 299

Query: 284 KAFRNFIFLKAR 295
           + F +FI  + +
Sbjct: 300 QCFLDFIAARVQ 311


>gi|222081254|ref|YP_002540617.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725933|gb|ACM29022.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 313

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 128/286 (44%), Gaps = 4/286 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ F  VA +GSF  AA+ ++L +SS+S+ +  LE  +G KL  R  R +T+T +G   
Sbjct: 6   AIKTFVRVAEAGSFAKAADTMNLPRSSVSKLVQDLEAHLGTKLVERTTRSVTMTTEGVAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H    ++   L+     +  S   P GKLR+     L   +L  +L +F   YPDI + L
Sbjct: 66  HERALKLLADLDDMDGTVAGSRSAPKGKLRVDIGSVLANQILIPSLSDFQSQYPDIDLML 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  DC IR    +  SS+  RKL  +     A+P YL     P    ++
Sbjct: 126 GVSDRPADVVSEGIDCVIR-GGSLSDSSMKARKLCELDYVICASPAYLDGLELPQRPDDI 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++++            +    +R    P  + + VN   + +   + G GI     
Sbjct: 185 QAHRIVSYFSASSGKRFPLRFQRGDERSEYLPTSAGISVNESTAHLNALLSGLGIGQSFG 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           ++ +   ++  LV ++ +    +  ++  YP       +L+AF  +
Sbjct: 245 FLARPHFESGALVELLPEWKPDNHPLHLVYPADRFPNPRLRAFTEW 290


>gi|300718423|ref|YP_003743226.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661]
 gi|299064259|emb|CAX61379.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661]
          Length = 299

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 144/297 (48%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++LR + VV  +GS T AAEQL  + S ISR +S LE ++   L +R  R + LT
Sbjct: 1   MKITLEELRAWVVVVDTGSITAAAEQLSQTTSGISRALSRLEKKLQTTLLHRTTRRIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        E+   +ET + ++ +    PSG+LR+        +++   L EF   YP
Sbjct: 61  EEGQIFLEHAREILRSVETAEEQIAQRREIPSGRLRVNAATPFMLHVIVPLLDEFTARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  D+  ID+     D AIR+ + ++ SS+  R L +  +   A+P YL     P
Sbjct: 121 LIQLELNTDDLVIDLLEQQTDIAIRIGE-LRDSSIHARALGSSRLRLVASPDYLAKYGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++LD H L+ F  L    +    W +  +    +P    +  +S  ++ Q  V G G
Sbjct: 180 TRVEDLDDHRLLGFSQLDRHNVWPV-WKSEGEPLQIKP---TMSASSGETLRQLAVYGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  + D++ +++     LV +++D+       ++  Y      + ++  F +F+  +
Sbjct: 236 IVRISDFLSREDRASGRLVTVLDDLTREMHHPIHAVYYRNTTLSVRISCFLDFLSEQ 292


>gi|296160862|ref|ZP_06843675.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295888954|gb|EFG68759.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 312

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 145/291 (49%), Gaps = 9/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRHVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +LE  +  +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQVLAELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R++ T H+   A+P YLK    P ++ +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARQIATAHLVLCASPAYLKRHGTPKTVADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +  +    +      AT D          L VN   +     + G+GIA+L  
Sbjct: 187 ARHNYLQYAGVSALEIAP----ATGDASSRVRLTGNLIVNHLEAQRVIVLQGAGIAMLGT 242

Query: 247 YIVKDN---PNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++ D+     LV ++ +DV      ++  Y      + K+++F +F+  +
Sbjct: 243 EVIGDDLAAGRLVPLLVDDVPPRELPIHVVYASRRHLSAKVRSFVDFLAER 293


>gi|332160217|ref|YP_004296794.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325664447|gb|ADZ41091.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860094|emb|CBX70418.1| hypothetical protein YEW_BJ06650 [Yersinia enterocolitica W22703]
          Length = 303

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 130/287 (45%), Gaps = 10/287 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA  GSFT AA  + L +SS+S++IS LE  +GI+L  R  R L LT  G 
Sbjct: 5   LQDMALFARVAECGSFTRAAAMVGLPKSSVSQRISQLEQSLGIRLLTRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ +
Sbjct: 65  RYLVHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLARLATDFQRQYPDVLL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++ +  +D+  D  D A+R  KP Q SSLI R+L     +  A+P YL      L  +
Sbjct: 125 EVLVSDSMVDLVEDGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLLHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD H  I         +   +       P           ++ L   +  + G GI LL
Sbjct: 184 QLDTHRCIAHRAWQALILRHEDEFFRWQVPALHV------TDNLLYARECALNGGGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P ++ ++   N  L+ ++         +Y  YP    N+  L  F +
Sbjct: 238 PAFLSREVVANRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFID 284


>gi|197335985|ref|YP_002156116.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197317475|gb|ACH66922.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 303

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 124/289 (42%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++ VF  + +  SFT AA+ L +S++ +S+QI  LE  +G++L  R  R  +LTE G  
Sbjct: 6   KQMIVFNALTQQQSFTKAAQLLDISRTQVSQQIQLLEERLGVQLVQRTTRSFSLTEAGQT 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +  ++   + EL  +     GKLR+        N +   L E    YP + I+
Sbjct: 66  FAVHCANIADEINEAENELLTNIDNLQGKLRVGIAQSFATNHILPYLSELHHAYPQLNIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  ID+  +  D  I +         + R L+  H    A+P YL     P    +
Sbjct: 126 ITLFDHKIDVIAEQLDLWIGVMDS-PPEGFVARHLIDCHFVLVASPLYLAKQGIPYHPYD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KHN +T+  +  +  +D       D  +        +++S  +I      G+GI  + 
Sbjct: 185 LKKHNCLTY--ISRERKDDVWGFHKEDENLQIKVSGNYRIDSADAIRNATTAGNGIGYIA 242

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y++ D      LV+++ D     S  +Y  YP       K+  F  F+
Sbjct: 243 TYLLSDELQTGKLVQLLPDWELNQSMPLYAVYPRRKFLPKKVHVFMEFV 291


>gi|53721476|ref|YP_110461.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76818600|ref|YP_337135.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|134282916|ref|ZP_01769618.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167722513|ref|ZP_02405749.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167741494|ref|ZP_02414268.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167818685|ref|ZP_02450365.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167827060|ref|ZP_02458531.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167897132|ref|ZP_02484534.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167905508|ref|ZP_02492713.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|217424451|ref|ZP_03455949.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226196533|ref|ZP_03792114.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237510523|ref|ZP_04523238.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|254187238|ref|ZP_04893752.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198896|ref|ZP_04905314.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254264418|ref|ZP_04955283.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254296760|ref|ZP_04964214.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52211890|emb|CAH37894.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|76583073|gb|ABA52547.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|134245564|gb|EBA45656.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|157806589|gb|EDO83759.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157934920|gb|EDO90590.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169657068|gb|EDS88462.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|217392375|gb|EEC32399.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225931409|gb|EEH27415.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002728|gb|EEP52152.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|254215420|gb|EET04805.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 303

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 12/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F VVA +G F+ AA QL  + SS++R +  LE  +G+ L  R  R +TLT+ G+  
Sbjct: 6   ALQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L      + ++  +P G LR++  +   + +L  +L  FL  YP + + L
Sbjct: 66  LEQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +  +D++ D  D A+R+ +P +   L+ R L        A+  YL     P +  +L
Sbjct: 126 AVSDAYLDLATDRIDVAVRIGEPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPAAPGDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  + F    P      +W  + D    +  +   L  NS   + +  + G G+AL+P
Sbjct: 186 AAHRCLRF----PYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALVP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLK 293
            ++V D+     L+ + E            VY  Y    +++ K++ F  F+  +
Sbjct: 242 MWLVHDDIVAGRLLPLFESWCVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFLAQR 296


>gi|194291125|ref|YP_002007032.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193224960|emb|CAQ70971.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 336

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 126/297 (42%), Gaps = 9/297 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D   ++  F  V   GS   AA   +++   I R+I+ LE  +G+KL +R  R + +T
Sbjct: 30  PMDKLKQIEAFIAVVEHGSMAAAALTQNVTPVMIGRRINALEARIGVKLLHRSTRRIAVT 89

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG+       +    L+  ++ + E   K +G L ++     G+  +  +   FL   P
Sbjct: 90  EQGAVFMEQCKKALADLDRAEMLIAEGKHKATGHLIVSAPAAFGRKHVAPHAPAFLASNP 149

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++QI   L ++ +D+  +  D  IR+   I   + +  KL +        P Y      P
Sbjct: 150 EVQISFNLTDRVVDLVREGYDVGIRIGGAI-DPNFVAIKLASNKRVVCGTPAYFAKYGVP 208

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            ++ +L +HN + F     +  +   W  + +      R++  L  N    + ++   G 
Sbjct: 209 QTLDDLAQHNCLAFNL---QGGQQRGWYFSQNGKTVTVRVNGNLDCNDGELLHRWTGEGL 265

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+     + +    ++  L+ ++++   P++ +   YP+      K++ F   +  +
Sbjct: 266 GLGWRSTWEILPQLESGELITVLDEYALPAYDILAVYPQQRPVPAKIRFFIEHLKAQ 322


>gi|161520586|ref|YP_001584013.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353226|ref|YP_001948853.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344636|gb|ABX17721.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337248|dbj|BAG46317.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 303

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 131/299 (43%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+   VA  GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT 
Sbjct: 1   MDHLQAMRILARVAHLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTV 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   L+  +   +E+   P G +R+        + +   L +F   YPD
Sbjct: 61  EGTTYYERCVRLLADLDDAETLFEEAGASPRGVVRVDLPERFALHRVIPALPDFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + + ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+  Y      P 
Sbjct: 121 LRVVISMTDRFVDLVADGIDCAVRVG-TLSDTSLVARRIGEMAQLNCASRDYAARHGLPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  EL  H  + +         D+ +       +   ++ S + VNS  + +  CV G G
Sbjct: 180 TPDELPDHVAVGYFSSRTGRELDWEYTDMDTGDVHSVKMRSIVSVNSSQAYLACCVAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   P   ++    +  LV ++ +   P   V   +P       +++ F +++     D
Sbjct: 240 MIQAPRDGLEPLLADGTLVEVLPEWQAPPLPVAVVFPHGRHLAPRVRIFVDWLAETLGD 298


>gi|113869533|ref|YP_728022.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528309|emb|CAJ94654.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 306

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   GS   AA   +++   I R+I+ LE  +G+KL +R  R + +TE
Sbjct: 1   MDKLKQIEAFIAVVEHGSMAAAALTQNVTPVMIGRRINALEARIGVKLLHRSTRRIAVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG+       +    L+  ++ + E   K +G L ++     G+  +  +   FL   P+
Sbjct: 61  QGAVFMEQCKKALADLDRAEMLIAEGKHKATGHLIVSAPAAFGRKHVAPHAPAFLSANPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI   L ++ +D+  +  D  IR+   I   + +  KL +        P Y      P 
Sbjct: 121 VQISFNLTDRVVDLVREGYDVGIRIGGAI-DPNFVAIKLASNKRVVCGTPAYFARYGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           ++ +L +HN + F     +  +   W  + +      R++  L  N    + ++   G G
Sbjct: 180 TLDDLAQHNCLAFNL---QGGQQRGWYFSQNGKTVTVRVNGNLDCNDGELLHRWTGEGLG 236

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     + +    ++  L+ ++++   P++ +   YP+      K++ F   +  +
Sbjct: 237 LGWRSTWEILPQLESGELITVLDEYALPAYDILAVYPQQRPVPAKIRFFIEHLKAQ 292


>gi|187919739|ref|YP_001888770.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718177|gb|ACD19400.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 303

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 133/292 (45%), Gaps = 6/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +A SGS T AA +L LS +++S+ ++ +E+   + L  R  R ++LT +G  
Sbjct: 8   DDLAFFSTLAASGSLTAAARELGLSTAAVSKHLAQMESRAAVSLVNRTTRRMSLTPEGEL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +++     L  S   P G LR+  T+  G++ +   +  F+  +P++ +Q
Sbjct: 68  YLTRARRILSEMDDLAQLLGGSQAAPKGLLRVNATLGFGRSHVAPLISRFVRRFPEVDVQ 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L      +S D  D  +R  +P   + +I R++ +      A+P YL   R P S  E
Sbjct: 128 LQLSVDPPPLSDDAFDVCVRFGEP-PDARVIARRVASNRRLLCASPRYLAERRAPRSPAE 186

Query: 186 LDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +HN I    G          +     ++         L  N     +++ + G GI +
Sbjct: 187 LAQHNCIGIRQGGDAYGVWRLTSGRGAAEKTETVRVRGNLTTNDGEIAVKWALDGQGILM 246

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             ++ + +   +  LV ++ +  TP   +Y  YP+ L+ T ++KAF + +  
Sbjct: 247 RAEWDIAEYLADGRLVHVLPEYRTPGADIYAVYPQQLQMTARVKAFVDMLVE 298


>gi|299067896|emb|CBJ39109.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 305

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 144/299 (48%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAAVRLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S    ++E       E    P GK+R+    D+G+ L+   +  F+  YPDI
Sbjct: 61  GQSLYQVASHALEEIERATTCAGELQDLPRGKVRMTAPEDVGRLLIAPIVARFMQQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARPLGVLRIGLFASPDYLQKQGMPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  HN + F        +    L   D        + L  +S   +       +GI 
Sbjct: 180 VRDLSHHNCLDFRGTGRGETQWR--LVGPDGLKTVAVRARLNADSLSYLETLIASSAGIG 237

Query: 243 LLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP Y   + + N   P LVR++ +  T    ++   P A     +++   + +    R
Sbjct: 238 PLPLYAGGVARANAPLPRLVRVLPEYATSGEPLHLVTPTARFIPKRVRLLIDMLTEAIR 296


>gi|260596398|ref|YP_003208969.1| hypothetical protein CTU_06060 [Cronobacter turicensis z3032]
 gi|260215575|emb|CBA27796.1| hypothetical protein CTU_06060 [Cronobacter turicensis z3032]
          Length = 305

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 139/292 (47%), Gaps = 12/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA +GSFT AA++  L +SS+S++IS LE  VG++L  R  R L+LT  G 
Sbjct: 5   LQDMALFALVAETGSFTAAAQKAGLPKSSVSQRISQLEAHVGLRLLNRTTRTLSLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E+    E   + +Q     PSG+LRI +   +G  LL     EFL  YPDI +
Sbjct: 65  HYLVHCREMLDASERADLAVQRLRDNPSGRLRITSPAGIGATLLARMNAEFLARYPDITL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +   D+ M+  D A+R  KP Q SSLI RK+     +  A+P YL          
Sbjct: 125 EVFISDDVRDLVMEGFDVALRTGKP-QDSSLIGRKIGHCPRYLLASPAYLAQHPPLTHPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIAL 243
           +L +H +I              WL   DR +    ++ + Q ++ L   +  + G+G+ L
Sbjct: 184 QLAEHRVIVH-------RAWTEWLLQRDRELYRCLLNQMHQTDNLLYARESALAGAGVTL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP +++ D      L+ I+ +       +Y  YP    N   L ++ NF   
Sbjct: 237 LPAFLLDDTLKQGALINILPEWTVTGNDLYLVYPGRKLNAPALVSYINFALE 288


>gi|315497152|ref|YP_004085956.1| transcriptional regulator, lysr family [Asticcacaulis excentricus
           CB 48]
 gi|315415164|gb|ADU11805.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 297

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 132/289 (45%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR+F  VA   SF+ A+E L L ++++S  +  LE  +G +L YR  R + LT  G 
Sbjct: 4   LDALRIFTRVAELSSFSQASETLGLPKATVSTAVQTLEAHLGTQLLYRTTRRVQLTHDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++    +      Q  +   SG++R+   I + Q+L+  NL   L  +PD+++
Sbjct: 64  LFYERAKDLLADADDLSGLFQ--TRSVSGRIRVDMPIPVAQSLVIPNLPLLLERHPDLRV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +DI  +  DC IR+   +  + L  R L  + M  +A+P YL     P +++
Sbjct: 122 ELSSTDRIVDIVREGFDCVIRVG-TLSDTGLTVRALGKLSMGNFASPEYLARWGTPRTLE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI +   +    + F++               + VN+  +     + G GI   
Sbjct: 181 DLKGHRLIHYVTQMGARPDGFDYSDGTQWQTMAME-GVVTVNNSEAYRHAALAGLGIVQA 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   + ++     L+ I+   +  +  V   YP+      +++ F +++
Sbjct: 240 PRVGMTEHVAQGRLIEILPAYVADALPVSLIYPQRRHLARRVRVFIDWV 288


>gi|299531447|ref|ZP_07044855.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298720610|gb|EFI61559.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 291

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 141/296 (47%), Gaps = 12/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L  F   A   SF  A   L +S S++ + ++ LE ++G++LF+R  R + LT+
Sbjct: 1   MDSFSGLESFVRAADLLSFAEAGRALCISASAVGKNVARLEQQLGLRLFHRTTRQVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS  H     +  +L   +  +Q ++  P G+LR++    +G   L   L EF   YP+
Sbjct: 61  EGSLFHERCRRILDELHDARAAMQAAAEAPRGRLRMSLP-TIGYRFLLPVLPEFQARYPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L  ++  +D+     D  IR  + +  S L+ R+L        A+P YL     PL
Sbjct: 120 VELDLDFNDHLVDVVEAGLDVVIRSGE-LADSRLVARRLGPFRFILAASPAYLSERGVPL 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H+ + +  L    +E++        PI       L  N+  +++   V G G+
Sbjct: 179 TPADLAGHSSLRYRFLNSGKLEEWMLPGLPAMPI------ALVCNNMEAMLGAAVSGLGL 232

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A +PD++ +D      L +++ + +T S      +P + + + K++AF +F   + 
Sbjct: 233 AYMPDFMARDALARGELQQVLAEQLTHSGQFSALWPSSRQLSPKVRAFVDFASERL 288


>gi|294624343|ref|ZP_06703042.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601359|gb|EFF45397.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 304

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 133/294 (45%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  V   GS T  A  L LS +  S+++  LE E+G++L +R  R L  T +G 
Sbjct: 4   LGDIALFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTAEGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +   L+    +L+ES+    G LR+  +   G+  +   L EF   +P ++I
Sbjct: 64  RLAERGRVLVEDLDALAEDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPRLRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L +  +D+     D AIR+  P++ S L+ R++        A+P YL+    P +  
Sbjct: 124 SAHLSDDLVDLVKQGFDLAIRIG-PLEDSGLVARRIADNRRTLAASPAYLQRHGTPRTPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  +    +     +D   L T D  +   R+ S  + N    +    V G GIA+
Sbjct: 183 ELAQHAGVLL--MGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAV 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + + D   + +LV++M D   P+  +    P       +++AF +F+  + 
Sbjct: 241 HSYWHIADELRSGHLVQVMPDYPPPTSQISAVMPARRLQPPRVRAFVDFLQERL 294


>gi|254525103|ref|ZP_05137158.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219722694|gb|EED41219.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 301

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 133/297 (44%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+ R+F  V    SFT AA+QL L +S++S  I+ LE  +G +L  R  R ++ T 
Sbjct: 1   MDRIDRFRIFTRVVECASFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVSTTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H     +  ++E  +   ++   +P G L+I     +G+ +L   L +F   YP 
Sbjct: 61  DGDVFHARCLRLIAEVEDAESLFRQDDAQPVGLLKIDVPSRIGRRILAPALPDFFARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L + ++ +++  D  D  +R+ + +  SSL+ R L  +     AAP YL+    P 
Sbjct: 121 VELDLGMTDRAVNLIEDGCDAVLRVGQ-LSDSSLVARTLGQLDFVNVAAPAYLREHGAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  + +       +E + W       +  P    ++VNS  + +  CV G G+
Sbjct: 180 HPADLQQHRAVNYASPTTARVEAWEWQDGSQLRML-PMPGWVRVNSAEASIACCVAGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y V+    +  LV ++   +     V    P       + + F  ++    R
Sbjct: 239 LQIPRYDVQAELQSGALVEVLPQHVAQPLPVTLLQPHRQHRAQRTQVFIEWLLPVLR 295


>gi|171319617|ref|ZP_02908712.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095149|gb|EDT40153.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 310

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   G+F  A+E + ++   +SR I+ LE ++ I+LF R  R ++LTE+G + +
Sbjct: 12  ISVFAAVVDMGTFAAASEVIGMTPPGVSRAIARLEKKLNIRLFNRTTRSVSLTEEGRRFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE        S+    GKLR+     + + +L   L  F+  +P+++I+LI
Sbjct: 72  EQVMPHLAGLEEAAAAAAGSASAVRGKLRVNLDPVVYRTILGQQLDAFMDAHPELEIELI 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
             +   D+ MD  D A+R  +P ++S+LI RKL+   +   A+P Y+     P   ++L 
Sbjct: 132 ARDSLGDLVMDGFDIAVRFGEP-RASTLIARKLLDTGIVTVASPSYVARRGRPAKPEDLE 190

Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              H  I F +  P+  + F W     R  I       L VN   +++  C+ GSGIA +
Sbjct: 191 SRSHRCIEFRN--PETGKPFAWEFHRRRKRIVVDTRGRLTVNDPGALLNACLAGSGIAQM 248

Query: 245 ----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                + ++  N  L+ +  +     F +Y  YP       K +AF +F+  
Sbjct: 249 LLLGAEPLIA-NGQLINLFPEWADERFPLYAYYPSRHHLPAKTRAFLDFVVE 299


>gi|226943787|ref|YP_002798860.1| transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226718714|gb|ACO77885.1| transcriptional regulator [Azotobacter vinelandii DJ]
          Length = 300

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 139/294 (47%), Gaps = 7/294 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V  +GSF+ AA QL  S S+IS+ +  +E  +G++LF R  R L LT++G   
Sbjct: 7   EMQVFVRVVETGSFSEAARQLLTSPSTISKLVLRIEQRLGVRLFERSTRRLALTDEGRLY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +  +L+  +  L   +    G +R+  ++  G   ++  L  F   +PDI + L
Sbjct: 67  YERSQALLAELDDIEQALARGANHARGTVRVNASVGFGTWGIEPLLPAFWEAHPDILVDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+ ++  D A R+   +  S+L  RK+        AAP YL+    P  I++L
Sbjct: 127 SLSDDLVDLYLERTDIAFRVGA-LADSTLRARKIGVAWRRMVAAPAYLERHGLPARIEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D+HN + F       +     L    R +       L  N+  ++ +  + G+G+A L D
Sbjct: 186 DRHNCLGFNFRRASPVWP---LRQGGRIVDRMVRGNLLANNGETVRRLAIAGAGVARLAD 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           + V  +     LV ++ +       V+  YP       +++ F +F+  + + +
Sbjct: 243 FHVDHDIAAGRLVEVLAESGHDCEEVHALYPGGRHPPQRVRVFLDFMVPRLQAF 296


>gi|301385008|ref|ZP_07233426.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060456|ref|ZP_07251997.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302133285|ref|ZP_07259275.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 303

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + +F  V RSGSF  AA QL +  +++SR+I  LE ++G +L  R  R L LT
Sbjct: 1   MIADLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRIQHLEVQLGTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +   +     L +   +L     +PSG++RIA   D         + +FL  YP
Sbjct: 61  QTGEHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+        A+P YL     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S++ L  H+ +      P     +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLESLQAHDCV--SAAYPGGSTTWRMLGPDAKIHDVQLSSRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIALLP  +++ +     LV ++      S  ++  YP   +    + AF   +  K R
Sbjct: 238 GIALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLR 296


>gi|171060831|ref|YP_001793180.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170778276|gb|ACB36415.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 310

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 8/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+    ++  F  VA+ GS T AA    ++ + I R+I  LE  +G+KL  R  R ++LT
Sbjct: 1   MADRLTQIEAFVAVAQKGSLTAAAAGEGVAPAMIGRRIDALEARLGVKLMLRTTRRISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +GS      + +   L   +  +    VK SG +RI      G+  +   +  F+ L+P
Sbjct: 61  HEGSAFLEDCNRMLADLANAEASVSAGGVKASGLIRITAPGGFGRRHVAPLVPRFMALHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L L ++ ID+  +  DCA+R+   +  SSLI  +L        AAP YL     P
Sbjct: 121 EVRISLNLSDRVIDMVNESYDCAVRVGD-LPDSSLISVRLADNRRRCVAAPAYLARAGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
               EL +H  +T      +  +   W  TVD  +   R    L       +  +CV G 
Sbjct: 180 THPNELMRHECLTLSS---EASQSRGWAFTVDGEVAHLRPPGRLDCTDGQVLHAWCVAGL 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A    + V+    +  LV +++    P   +Y  +  A     +++ + +F+
Sbjct: 237 GLAWRSSWEVEGDLRSGRLVSVLDTFAAPPNGIYAVFAHAKHLPLRVRLWIDFL 290


>gi|123440948|ref|YP_001004937.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087909|emb|CAL10697.1| putative LysR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 303

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 130/287 (45%), Gaps = 10/287 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA  GSFT AA  + L +SS+S++IS LE  +GI+L  R  R L LT  G 
Sbjct: 5   LQDMALFARVAECGSFTRAAAMVGLPKSSVSQRISQLEQSLGIRLLTRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + LQ     PSG+LRI+T   LG  LL     +F   YPD+ +
Sbjct: 65  RYLVHCQEMLQAAERADLALQRLKDNPSGRLRISTPAGLGATLLTRLATDFQRQYPDVLL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++ +  +D+  D  D A+R  KP Q SSLI R+L     +  A+P YL      L  +
Sbjct: 125 EVLVSDSMVDLVEDGFDVALRTGKP-QDSSLIGRRLGYAPRYLLASPAYLAQHPPLLHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD H  I         +   +       P           ++ L   +  + G GI LL
Sbjct: 184 QLDTHRCIAHRAWQALILRHEDEFFRWQVPALHV------TDNLLYARECALNGGGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P ++ ++   N  L+ ++         +Y  YP    N+  L  F +
Sbjct: 238 PAFLSREVVANRQLIEVLPQWQAEGNELYLVYPSRKLNSPALSCFID 284


>gi|319796581|ref|YP_004158221.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315599044|gb|ADU40110.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 309

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 120/296 (40%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V R GSF  A  +L L  +++SR+I  LE ++G +L  R  R LTLT  
Sbjct: 2   LDLNHIAMFVQVVRHGSFAEAGRRLGLPPNTVSRRIQELEAQLGTRLMQRSTRKLTLTSA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   H   +     L      L   S +PSG +R+A T D         + EFL   P +
Sbjct: 62  GQAFHERCAGSVDGLVEAGQALITGSQEPSGLVRVAATADFFDFFPMEWVAEFLAANPLV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPL 181
           ++  +L +   D+  D  D A R    +  +  + RK L        A+P Y+     P 
Sbjct: 122 RVDFVLSDAKADLIADQIDVAFR-GGELPDTGYVGRKLLGPRTDGLVASPAYIAARGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++++L  H+ +T      +          V+  +          N+  ++ +  V G GI
Sbjct: 181 TLRDLTDHDCVTAAHPSGRATWRMTGPDGVEEEVQV--SGRFSGNTAQALRRAAVAGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP  + +   +   LV ++         +   YP        + AF   +  + 
Sbjct: 239 ALLPPSMGRLDVEAGRLVPVLPQYQRTGQGLSVLYPSRKHLPLAVSAFIGMVMERL 294


>gi|302188623|ref|ZP_07265296.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 297

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 4/287 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F  VAR  SFT AA +L +S S++S  + GLE  +G++L  R  R +  TE G 
Sbjct: 6   LNDLQAFLQVARDQSFTKAATRLGVSPSALSHTMRGLEERMGLRLLARTTRNVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI
Sbjct: 66  RLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLTQYPDIQI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q
Sbjct: 126 EICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I            +       R +          NS + ++   + G G+A +
Sbjct: 186 DLTQHTCINIRHSPNGSCYAWE-FEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAYV 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           PD + + +     L  ++ D        +  YP   + +    AF  
Sbjct: 245 PDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVE 291


>gi|167582125|ref|ZP_02374999.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 301

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE  +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   YP + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGRLRIAPIVAAFRQQYPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGAPERP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W     +P+     + L  N   +     + G+GIAL
Sbjct: 184 ADLLAHRCIVMGEQPR-----VEWRFDGPQPVAVEVSAALLTNDGGAARALALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W +
Sbjct: 239 KSIWDVGPDIAAGRLRRVLPEFASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWCW 298


>gi|90412929|ref|ZP_01220928.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90326108|gb|EAS42542.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 303

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L VF +V   GS+T AA++L ++ S++S+QIS LE  + +KL  R  R L ++E G+K+
Sbjct: 12  DLAVFIIVVDEGSYTAAAKKLGVTPSALSKQISRLEKALSVKLLERTTRKLMISESGTKI 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     + +  +            PSG L +A        +LQ  +  FL  YPDIQ++L
Sbjct: 72  YEQCKVMTNAAKQAVEIASSEHTIPSGTLTVAAPKAFLSIVLQPLVTPFLTQYPDIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +IDI  +  D   RL +   S +L+ +K+  +++   A+P YL    EP    +L
Sbjct: 132 KASDGEIDILSEGIDIVFRLTEH-PSEALVNKKIGKVNLALCASPEYLALRGEPQLPSDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ I  G+     + DF      D            VN     ++  + G GI + PD
Sbjct: 191 RQHDCIYLGETTTDHIWDF---IKDDEFQSVSVTGRYAVNHSQMRLKGVIDGLGIGIFPD 247

Query: 247 YIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++K   +N ++  +++D          +   + +      +L+AF N++  
Sbjct: 248 FVIKQALENGSVKEVLKDWTMKGNYQGDIALQFAQTKFMPARLRAFINYVTE 299


>gi|92113336|ref|YP_573264.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796426|gb|ABE58565.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 298

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 147/296 (49%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D LRVF  V R+GSFT AA +L +S+S  S++++ LE E+ + L  R  R L LTE G
Sbjct: 3   TLDALRVFVEVVRAGSFTAAARRLSISKSLASKRVAALEDELSVNLLNRSTRSLRLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     V  +L++ + ++Q  + +P G+L+++  +  G   L      F+  YPD+ 
Sbjct: 63  QIYYEHGLRVIEELQSAEAQVQSVTSQPRGQLKVSAQVSFGFMYLAAPTTAFMRRYPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++L+++  +   D  D AIR+  P+  SSL+ R L  +    YAAP YL     PL  
Sbjct: 123 VEILLEDQRFEPIDDSVDLAIRMG-PLPPSSLVSRPLCKVVYGLYAAPDYLARAGRPLHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++  ++ + +G+        F+      +P+     S L +N+ L +++    G G+A 
Sbjct: 182 RDIADYDTVFYGNYDLGAHWRFSL---NGQPLDIEPNSRLVINNLLGVVEAAKSGFGLAY 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LP +  +   +   L+ +++       ++   +        K +A+ +FI    R+
Sbjct: 239 LPTFAARAAVEEGQLIPLLQPYWNEHGSMLVLFRSRKYLPDKTRAYLDFITDWFRE 294


>gi|262165288|ref|ZP_06033025.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|262025004|gb|EEY43672.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 326

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 144/293 (49%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   D L +F +V  +GS+T  +++  +  ++I+R+I  LE  + ++L  RHAR LTLTE
Sbjct: 35  TMKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTE 94

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + ++  S +  +L +   E+ +     SG++RI+   +L + ++      F+  YPD
Sbjct: 95  AGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPD 154

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L++ N+  D+     D   R+  P + SSLI RK+  +     A+P YL N  +P 
Sbjct: 155 IHIELMMSNQADDLDPTEWDVIFRVG-PQRDSSLIARKIGEVKDILVASPTYLANHPQPT 213

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H L+         +  +    +    +        Q ++   +   C  G GI
Sbjct: 214 HAEELHQHQLL-----KGYPLLKWQLTNSQGETVVNTDRGRFQASALNVVRSACSEGLGI 268

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L+PD ++++   + +LV+++ D  +    +Y  Y        K++ F +F+ 
Sbjct: 269 TLMPDVMLREYLGDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 321


>gi|326388714|ref|ZP_08210306.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206804|gb|EGD57629.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 315

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 135/299 (45%), Gaps = 6/299 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  V  +GSF  AAE L LS+ ++S+ +  LE  +GI L +R +R L LTE G
Sbjct: 5   DLEAWAIFAKVVETGSFAAAAEALGLSKPTVSKAMGRLEARLGIPLLHRTSRRLALTESG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +      +    E  + E +     P G +R+A  +  G   +   L EFL  +P + 
Sbjct: 65  RGVLDKARRILADGEAAEAEARADGDIPRGLVRLAVPMSFGLRHVAPLLPEFLAAWPLVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +++     D  +R+   ++ SSL  R+L T+     AAP YL     P   
Sbjct: 125 VDLDLSDTLVNVVAGGHDIVLRIAG-LEDSSLRARRLCTVRRPLVAAPAYLAVHGTPTHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H  + + +L    +  F      +   G      L  N+  ++    + G GIAL
Sbjct: 184 RELSAHQGLLYTNLEHPGLWRFT--HPSEGEYGVTVHGRLGANNADALAPALLAGQGIAL 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            PD++V D+     LV +M D   P   ++   P   +   +++   +F+  + RD  +
Sbjct: 242 QPDFMVWDHLAKGTLVEVMSDWRIPDIALHLVTPPGKQRPARVRVLLDFLAARLRDAPW 300


>gi|194291696|ref|YP_002007603.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225600|emb|CAQ71546.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 311

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 137/286 (47%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF  AAE + L +++++R I  LET +G+KL +R  R +++T  G+  +
Sbjct: 7   MQAFTRVVDVGSFARAAESMDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTNDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  L   +  P G L + TT  L Q +L  +L EF   YPD++++L 
Sbjct: 67  ERCVRILADVEEAEQSLTRQNNSPRGTLSVDTTAGLAQLVLVPHLHEFFQAYPDLKLELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++ K ID+  +  D  +R+  P+   +++ R++  + +  YA+P YL     P  + EL 
Sbjct: 127 INGKPIDLLQEGVDVVLRVGIPL-DEAMVARRIGHVQLAFYASPIYLNRNGTPRDLTELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + F  L  +   +  W        GE  + S +  N     +   + G GIA +  
Sbjct: 186 QHKAVNF--LSNRTGREMPWPLARGTERGEVLLPSAISTNDADVYLGCALEGHGIARISR 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + +    +  LV I+ D  T    +   YP+    + K++ F N+
Sbjct: 244 AMAEPYVASGRLVEILADWQTDELPISAMYPQNRHLSAKVRVFVNW 289


>gi|152984691|ref|YP_001347687.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959849|gb|ABR81874.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 315

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 7/296 (2%)

Query: 3   FDWDK-LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R F  V   GSFT AA  L  S +++SRQ++GLE  +  +L  R+ R + +TE
Sbjct: 1   MDLLQGIRTFVRVVEHGSFTQAARLLGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +    ++   +     ++++S   PSG+LR+    +LG   L   L ++L  YP+
Sbjct: 61  TGLRYYEHCKQILRTVAAAAADVEDSQSHPSGRLRVHAATELGLGHLMPLLADYLDRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L      +  +  D  + L + +  SSL+ R+L  +   A AAP YL+    P 
Sbjct: 121 VCVDLSLTQDSPALLDEGLDMLVVLGRALPDSSLVARELGHVFSVACAAPAYLERHGAPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  EL  H  +            F                 L+VN   +       G G+
Sbjct: 181 SPWELRHHRCLQIAGASGAQAWSF---VHDGAEARVEVRDVLKVNLPEAACLAASAGLGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LLP ++      +  L+R++ D       V+  YP       K++ + +F+  + 
Sbjct: 238 CLLPGFVAARALQDGRLLRVLPDYRLLPREVFALYPSRRYLDAKIRTWIDFLRERL 293


>gi|325267607|ref|ZP_08134259.1| LysR family transcriptional regulator [Kingella denitrificans ATCC
           33394]
 gi|324980957|gb|EGC16617.1| LysR family transcriptional regulator [Kingella denitrificans ATCC
           33394]
          Length = 296

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 128/286 (44%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AAE L +S    S+ ++ LE  +G +L YR+ R L LTEQG +  
Sbjct: 7   LKVFCQVVQSGSFTKAAELLDISIPMASKHVAALEKNLGTQLLYRNNRSLKLTEQGEQYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S +   L     + Q     P G LRI+  +    +     ++ +   YP++++ L 
Sbjct: 67  RDCSHILELLAQANEQAQAGVCTPQGLLRISAPVWFACDYFARLVQAYREAYPEVELMLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D++ D  D A+RL   +   +++ + L  I  +  A+P Y+     P ++ +L+
Sbjct: 127 LTNRAVDLNSDGEDLALRLSYELAD-NIVAKPLGNIPFYLVASPAYIARHGLPETVADLE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +         M+    +              +  N    +    + G+GI  +P +
Sbjct: 186 RHQAVMPSYADMSKMQ----IEHSGEKSSLHLHGTVASNHTQMVAALILAGAGIGYMPSW 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  D   +  LV ++         +Y  Y        K+++F  F+
Sbjct: 242 LADDALSDGRLVHLLPQHQINIPPLYAVYANRRFMKAKVRSFIEFM 287


>gi|172065152|ref|YP_001815864.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997394|gb|ACB68311.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 345

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   G+F  A+E + ++   +SR I+ LE ++ I+LF R  R ++LTE+G + +
Sbjct: 12  ISVFAAVVDMGTFAAASEVIGMTPPGVSRAIARLEKKLNIRLFNRTTRSVSLTEEGRRFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE        S+    GKLR+     + + +L   L  F+  +P+++I+LI
Sbjct: 72  EQVMPHLAGLEEAAAAAAGSASAVRGKLRVNLDPVVYRTILGPQLDSFMDAHPELEIELI 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
             +   D+ MD  D A+R  +P ++S+LI RKL+   +   A+P Y+     P   ++L 
Sbjct: 132 ARDSLGDLVMDGFDIAVRFGEP-RASTLIARKLLDTGIVTVASPAYIARWGRPTKPEDLE 190

Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              H  I F +  P+  + F W     R  I       L VN   +++  C+ GSGIA +
Sbjct: 191 SRSHRCIEFRN--PETGKPFAWEFHRRRKRIVVDTRGRLTVNDPGALLNACLAGSGIAQM 248

Query: 245 ----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                + ++  N  L+ +  +     F +Y  YP       K +AF +F+  
Sbjct: 249 LLLGAEPLIA-NGQLINLFPEWADERFPLYAYYPSRHHLPAKTRAFLDFVVE 299


>gi|156933460|ref|YP_001437376.1| hypothetical protein ESA_01278 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531714|gb|ABU76540.1| hypothetical protein ESA_01278 [Cronobacter sakazakii ATCC BAA-894]
          Length = 303

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 131/303 (43%), Gaps = 7/303 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+  + D L VF  V    SF+ AA  LHL+  ++S+QI+ LE  +G  LF R+ R L +
Sbjct: 1   MTLRNLDDLAVFVHVVECRSFSAAARALHLAPKTVSKQIARLEQALGATLFERNTRNLRI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G  +          LE  Q     +S    G +R+   +  G+  +   +++F  L+
Sbjct: 61  THEGRAIAERAKVALGVLEEMQEVATGASRDLRGIIRLTAPMPFGRKYVAPAIQDFCRLH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +   L L ++  D+  D  D AIR+ + +  S L+  ++        A+P YLK   +
Sbjct: 121 PGVTFDLRLSDQMQDLYSDDLDLAIRMGE-LADSRLVALRVADNRRILAASPDYLKAHGQ 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   Q+L +HN + F    P   +    L              L  +S   +  +C+ G 
Sbjct: 180 PAHPQDLAQHNCLVFA--YPGLQQSIWPLRKGRMEKAVAVGGTLCSDSGDVLHAWCLAGM 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI+L   + + +   +  L+R++ +       +            +L  F +F+  + RD
Sbjct: 238 GISLRETWDIHEELRDGRLIRVLPEWEATPSRISIVRARREPIARRLTVFSDFLLERWRD 297

Query: 297 WKF 299
             +
Sbjct: 298 APW 300


>gi|161525152|ref|YP_001580164.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160342581|gb|ABX15667.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 310

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 132/282 (46%), Gaps = 5/282 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA +G FT AAE+L+L+ S++S+ ++ LE  +G+ LF R  R L LT+ G   +   
Sbjct: 21  FVCVADAGGFTAAAERLNLTNSAVSKSVARLERRLGVVLFERTTRKLVLTDAGRAFYETC 80

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  +L   +  L     +P G +RIA     G+  +   L  F   YPD++  L+  +
Sbjct: 81  TRILAELAEAEAVLAAQQREPVGTVRIALPASFGRLCVVPVLVRFSEQYPDVRPHLLFTD 140

Query: 131 KDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D++ +  D A+R+  P     SL +R L    +   AAP YL+    P ++ +L +H
Sbjct: 141 RFVDLAEEGIDLAVRIGGPPGLPPSLGRRFLGRERLIFCAAPAYLEKNGIPQTVDDLQEH 200

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I +G         +++ A   +         +      + + +   G G+A L  ++V
Sbjct: 201 ACIVYG-RPDGAQSLWSYAAADGQVEQRVVRPRIVAGDAEAQLAFVRAGLGVAQLATWLV 259

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +D+     LV I+++  T    +   +P A + T K+     
Sbjct: 260 RDDLKAGRLVAILDEAATDGLPLSLIWPVARQLTPKIHVLVQ 301


>gi|167621769|ref|YP_001676554.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351510|gb|ABZ74240.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 299

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 136/294 (46%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA +GSF+ AA+ LH++++S +  I  LE  +  +L +R  R L LT 
Sbjct: 1   MDVLQAMRVFKSVAETGSFSKAADTLHIARASATMTIQKLEAHLKARLVHRTTRSLNLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   +E  +    ++ + P GKLRI   + L   +L   + +F   YP+
Sbjct: 61  EGAAYYERCVRILTDVEEAESLFGQAGLGPRGKLRIDMPVMLRVIVL-PQIGDFRARYPN 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L  +++ ID+  +  DCA+R+   ++ SSL+ R++ T      A+P YL     P 
Sbjct: 120 IELMLGFNDRPIDLVHEGVDCALRIGA-LRDSSLMSRRIGTYRTVTVASPEYLARQGTPS 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H  + +       + D +       PI         VN   + +Q  + G G+
Sbjct: 179 ALADLSDHVAVNYFWAGSGRLMDLS-FTVDGGPITVKMNGAFAVNDTDAYLQSGLDGYGL 237

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P  I     +   L++++ +    +  +   YP     +  ++ F +++  
Sbjct: 238 IQAPLMIAWPHLEAGRLIKVLGEFAPLTRPISALYPTNRHLSPAVRVFVDWVAE 291


>gi|54308917|ref|YP_129937.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913347|emb|CAG20135.1| putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 310

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L VF +V   GS+T AA++L ++ S++S+QIS LE  + +KL  R  R L ++E G+K+
Sbjct: 19  DLAVFIIVVDEGSYTAAAKKLGVTPSALSKQISRLEKALSVKLLERTTRKLMISESGTKI 78

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     + +  +            PSG L +A        +LQ  +  FL  YPDIQ++L
Sbjct: 79  YEQCKVMTNAAKQAVEIASSEHTIPSGTLTVAAPKAFLSIVLQPLVTPFLTQYPDIQLKL 138

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +IDI  +  D   RL +   S +L+ +K+  +++   A+P YL    EP    +L
Sbjct: 139 KASDGEIDILSEGIDIVFRLTEH-PSEALVNKKIGKVNLALCASPEYLALRGEPQIPTDL 197

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ I  G+     + DF      +            VN     ++  + G GI + PD
Sbjct: 198 RQHDCIYLGETTTDHIWDF---IKDEEFQSVSVTGRYAVNHSQMRLKGVIDGLGIGIFPD 254

Query: 247 YIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++K   +N ++  +++D          +   + +      +L+AF +++  
Sbjct: 255 FVIKQALENGSVKEVLKDWTMKGNYQGDIALQFAQTKFMPARLRAFIDYVTE 306


>gi|213969828|ref|ZP_03397962.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|213925376|gb|EEB58937.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 354

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 133/296 (44%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V RSGSF  AA QL +  +++SR+I  LE ++G +L  R  R L LT+ G
Sbjct: 55  DLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRIQHLEVQLGTRLLQRSTRKLVLTQTG 114

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   +     L +   +L     +PSG++RIA   D         + +FL  YP +Q
Sbjct: 115 EHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYPRVQ 174

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLS 182
           ++ +L ++  D+  D  D A R   P+Q S  + R+L+        A+P YL     P S
Sbjct: 175 LEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATHGMPDS 233

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L  H+ +      P     +  L    +       S    N+  ++ +  + G GIA
Sbjct: 234 LESLQAHDCV--SAAYPGGSTTWRMLGPDAKIHDVQLSSRFNANTAQALRKATLAGLGIA 291

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LLP  +++ +     LV ++      S  ++  YP   +    + AF   +  K R
Sbjct: 292 LLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLR 347


>gi|170734891|ref|YP_001774005.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820929|gb|ACA95510.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 306

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 133/299 (44%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF  +  +GS T AA+   LS + +   +  LE+ +G  L +R  R   ++
Sbjct: 1   MDL-LKAMAVFVRIVETGSLTAAAQAADLSPTMVGNYLQALESRLGAVLVHRTTRKQKVS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +    E+   ++ T+        +P G+LR+   +      L   L ++   YP
Sbjct: 60  AFGHAYYERCVEILGLVDDTEQLALAHLKQPRGRLRVTAPVVFTTECLIPALADYYRRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ ++  +   D+  +  + AIR+   + +  ++ R L    +   A+P Y+     P
Sbjct: 120 EIKLDIVATDSLADLFDEGFEAAIRIG-TLANPDVVARPLAPYRLVLCASPAYVHEHGAP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
            +   L +H+ +T+               T++ P G   +S    L++++  ++ +  + 
Sbjct: 179 ATPHALGEHHCLTYAYPPRSEWHAAQTQWTLEGPDGPMSLSVDGRLKIDNADALRRAALR 238

Query: 238 GSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GIA+LP  +++D+     LV IM D   P   +   Y +  + + KL++F  F+  +
Sbjct: 239 GLGIAMLPSILIRDDIREKRLVEIMPDFAGPERAMNLLYLQERQQSPKLRSFTEFVVDR 297


>gi|312602525|ref|YP_004022370.1| LysR family transcriptional regulator [Burkholderia rhizoxinica HKI
           454]
 gi|312169839|emb|CBW76851.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 322

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +RVF  VA +GSF  AAE+L++S +  S+ I+ LE E+ ++L  R  R ++LTE GS
Sbjct: 23  FTSIRVFREVAEAGSFVKAAERLNISTAMTSKHIASLERELHVRLLNRTTRQMSLTEAGS 82

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E    L+  +  L   + +P G L+++             +  +   +P + I
Sbjct: 83  VYYEQCCEALDILQAAEAALGAQNSQPQGVLKVSAPGWFATRRFADLVAAYQHRFPHVLI 142

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+N+ +D++ +  D  +R      S SLI R L  +      AP YL   R P    
Sbjct: 143 DLRLENRFVDLTQEGYDMVLRATSE-PSPSLIVRPLCEVPFLLVGAPDYLARHRMPREPL 201

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +++ H ++    L      D   L+           + L+ N     +Q    G G+A L
Sbjct: 202 DIEAHRIV----LPNYTNLDRVELSGPRGRFTVRNRAVLKTNDTSMALQCVKAGLGLAYL 257

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P++IV     +  L++++ D +  S  VY  Y      T K++ F +F+    
Sbjct: 258 PEWIVTTEVRDGALLKLLPDYVLFSPRVYVVYTSRKYMTPKVRTFIDFLSEAL 310


>gi|124267599|ref|YP_001021603.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124260374|gb|ABM95368.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 323

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 135/285 (47%), Gaps = 7/285 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A S SF  AA  L ++ S +S+ ++ LET++G++L +R  R ++LT+ G+     
Sbjct: 9   AFVRTAESRSFAQAARLLDVTPSGVSKSVARLETQLGLRLLHRTTRQVSLTDDGAVFFEH 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +    +  +  + +    PSG+LR++    LG+  +   L +FL   PD+ ++L L 
Sbjct: 69  CRRLLDDFDAARSLMSDRGAAPSGRLRVSVPSTLGKLFVVPRLPQFLAARPDVTLELDLS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ + +  +  D A+R+   +  SSL+ R L T  +   A+P YL++     ++ +L +H
Sbjct: 129 DRQVALVDERVDVAVRIG-TLVDSSLVARPLWTQQVVTIASPGYLQDSAALATLGDLARH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYI 248
             ++F    P    +  W+   D    + R    + ++   +++     G G+A +PDY+
Sbjct: 188 RCLSF--RWPTTGRERPWMFRCDGRTVQLRPRVYMMLDEGEAMVVAVRAGLGVAQVPDYM 245

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                D    V ++  +  P   +   Y        + +AF +++
Sbjct: 246 AADAIDRGEAVEVLAGIRPPPTPINAVYASQRNLPARTRAFVDWL 290


>gi|221215841|ref|ZP_03588799.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221164306|gb|EED96794.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 304

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/282 (26%), Positives = 132/282 (46%), Gaps = 5/282 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA +G FT AAE+L+L+ S++S+ ++ LE  +G+ LF R  R L LT+ G   +   
Sbjct: 15  FVCVADAGGFTAAAERLNLTNSAVSKSVARLERRLGVVLFERTTRSLVLTDAGRAFYETC 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  +L   +  L     +P G +RIA     G+  +   L  F   YPD++  L+  +
Sbjct: 75  TRILAELAEAEAVLAAQKREPVGTVRIALPASFGRLCVVPVLVRFSEQYPDVRPHLLFTD 134

Query: 131 KDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D++ +  D A+R+  P     SL +R L    +   AAP YL+    P +I +L +H
Sbjct: 135 RFVDLAEEGIDLAVRIGGPPGLPPSLGRRLLGRERLIFCAAPAYLEKNGIPQTIDDLQEH 194

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I +G         +++ A   R         +      + + +   G G+A L  ++V
Sbjct: 195 ACIVYG-RPDGVQSLWSYAAADGRVEQCVVRPRIVAGDAEAQLAFVRAGLGVAQLATWLV 253

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +D+     LV I+++  T    +   +P A + T K+     
Sbjct: 254 RDDLKAGRLVAILDEAATDGLPLSLIWPVARQLTPKIHVLVQ 295


>gi|207723441|ref|YP_002253840.1| hypothetical protein RSMK00713 [Ralstonia solanacearum MolK2]
 gi|206588642|emb|CAQ35605.1| hypothetical protein RSMK00713 [Ralstonia solanacearum MolK2]
          Length = 300

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 6/290 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS T AA+ L +S++ ++R ++ +ET  G +L +R  R + LT  G     
Sbjct: 8   EVFVAIVDRGSLTAAADALDMSRAMVTRYLAQMETWSGARLLHRTTRRIGLTPAGEATLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++        +     +  P G LR+A    L Q +L   +  +L  YPD  I L++
Sbjct: 68  RCRQMLEIAGQMPVSAGPETDTPRGLLRVACAQVLAQQVLGEAVTAYLRRYPDTAIDLVV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           DN+ +++  +  D A+R+   +   +LI R L +      AAP YL     P  +++L  
Sbjct: 128 DNRTVNLVEERIDLAVRITNDL-DPNLIARPLGSCESVVCAAPAYLAAHGTPRRVEDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K +  F   A    P   P    L  N  ++++     G+GI + P + 
Sbjct: 187 HNCLTYS-YFGKSLWRFT-EARTGEPAAVPVGGNLSANESMALLAAVKAGAGIGMQPAFA 244

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                 +  LVR++ D +  +  ++  Y    +    L+A  +F+    R
Sbjct: 245 AAPLIASGQLVRLLPDHVPQALGIHGVYSSRRQMPAALRAMLDFLAEWFR 294


>gi|194364236|ref|YP_002026846.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347040|gb|ACF50163.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 309

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 9/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  VA  GS T AAE L +S++ +SR ++ +E  +G +L +R  R ++LT 
Sbjct: 1   MDRLTAMTVFVEVAERGSLTAAAEVLDMSRAMVSRYLAEVEGWLGARLLHRTTRRVSLTG 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++    E  + EL     +P G LR+  ++  GQ+ L   +  F+  +P 
Sbjct: 61  PGEAALARFRQMLAIGEELRGELASDDPEPHGTLRVTASVSFGQSHLARAVAGFVARHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +I+L+L ++ +++  +  D A+R+ + I   SLI R+L T      A P YL+    P 
Sbjct: 121 ARIELLLVDRTVNLVEERVDLAVRIARQI-DPSLIARRLATCRSVLCATPSYLQARGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L  HN +T   +     +    L    R +       +  N    +++    G+GI
Sbjct: 180 APEHLAAHNCLTHHYVGKSLWQ----LHREGRSLSVAVGGNISANEASLLLEAVRAGAGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y V     +  L+ ++ +       ++  Y    +    ++ F +F+  
Sbjct: 236 AMLPTYQVAPFLRSGELIELLPEFSLDELGIHAVYASRRQQPAIMRRFLDFLAE 289


>gi|170293884|gb|ACB13019.1| putative LysR family transcriptional regulator [Hydrogenophaga sp.
           PL2G6]
          Length = 319

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 7/288 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LHL+++S+++ I  LE  + +KL  R  R + +T 
Sbjct: 1   MDRFDAMQAFVRVVDAGSFTKAAETLHLNKTSVTQLIQQLEARLRVKLLNRTTRKVQVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   L+  +  L ++   P G+LR+     L + +L   L  F   YPD
Sbjct: 61  EGAAYYERVVRLLADLDDAETSLSDARTAPRGRLRVDVPSPLARFVLVPALSGFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI + + ++ +D+  D  DC IR    I   SLI R +  + + AYAAP YL+    P 
Sbjct: 121 IQIDMGVSDRIMDLISDSVDCVIR-GGEITDPSLIARLVGELPIKAYAAPGYLQRHGTPE 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             ++L    H ++ F       +  F+        I       + ++   + +   + G 
Sbjct: 180 HPKDLEHSHHRVVGFLSTRNGRVPPFSMQLGDGERIDVRGHHVVAIDDGNAYLAAGLAGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G+  LP Y+ +D+     LV + ++       +Y  YP     + KL+
Sbjct: 240 GVLRLPTYMARDHVARGELVTLFDEWSFEPMPLYLAYPPNRYVSAKLR 287


>gi|150397550|ref|YP_001328017.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029065|gb|ABR61182.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 298

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 121/293 (41%), Gaps = 7/293 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS D + ++R F  VAR  SFT AA +L +++S++S  +  LE  +GI+L  R  R +  
Sbjct: 1   MSRDEFSEMRAFLEVARERSFTRAAAKLGVTRSALSHTVRALEERLGIRLLSRTTRDVAP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G +L       +  +      +     KP+G +RI    D    + +  L  FL  Y
Sbjct: 61  TAAGERLVECIEPHFESIAAEISAISALRDKPAGHIRIVCPDDAIGMVFRPRLPAFLRDY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI+++LI DN   +I     D  +RL + I    +  R    +      +P Y      
Sbjct: 121 PDIKVELIADNGFTNIVERQFDAGVRLGEAIARDMVAVRIGPDVRYAVVGSPDYFGRHST 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P S QEL  H  I     +P     + W    D      R+   L +N+    +   + G
Sbjct: 181 PSSPQELTNHKCINL--RLPTLGAIYAWEFNKDAHEFSVRVDGQLTLNNIEPALDAALDG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            G+A  P  +V+   ++  L  ++ D        +  YP     +    AF  
Sbjct: 239 IGLAYAPKDLVQPYLESGQLQEVLADWCPTFQGYHLYYPSRRNPSPAFSAFVE 291


>gi|307129723|ref|YP_003881739.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Dickeya dadantii 3937]
 gi|306527252|gb|ADM97182.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Dickeya dadantii 3937]
          Length = 318

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 125/293 (42%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L  F  +A  GS T  A +  LS  ++S++++ LE  +G++L  R  R L LT +G 
Sbjct: 4   IDDLLFFSRIAALGSLTAVARESGLSLPAVSKRLTQLEQRLGVQLIRRTTRRLDLTPEGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + H++E  + +++ + +   G+L +  +   G+  +   +  F   + ++++
Sbjct: 64  LYAEGALPILHEIEELESQVRRNQLTLRGRLTVNASFGFGRRHIAPLISAFARQHGELEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L ++ +++     D  IR   P   S L+  +L+       AAP YL  C  P ++ 
Sbjct: 124 QLQLTSQPLNMLDAGVDIDIRFGAP-PDSRLVAHRLMDNPRVLCAAPAYLARCGTPQTVA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN +                    R         L  N    IM+Y + G GI L 
Sbjct: 183 DLAGHNCLVLRQYESDYGLWR--FYRDGREFTHRAFGNLSANDGEVIMRYALDGHGIILR 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             + V+    +  LV ++ D I P   +Y  Y +      ++ AF  ++  + 
Sbjct: 241 SLWDVRPWLSSGELVALLPDYIMPEADIYAVYQQRRHVPARISAFIVWLKQQL 293


>gi|50084813|ref|YP_046323.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49530789|emb|CAG68501.1| putative transcriptional regulator (LysR family) [Acinetobacter sp.
           ADP1]
          Length = 305

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 137/296 (46%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 7   MFTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSSRHFAVT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S+KP G ++++  +D+ QN +   L EFL LYP
Sbjct: 67  DIGMNIYRHAQVMMNAAQAAHDLVDHLSIKPRGVIKVSVPVDIAQNQMSKLLPEFLKLYP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QL++ N+ +DI  +  D A+R+R  +    SL+ R+   I  H +A+  YL     
Sbjct: 127 EIRVQLMISNRRVDIVNEGIDIALRVRSKLDDDPSLVLRQFAQIEQHLFASQAYLNEFGS 186

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                +L +H  ++  D      + F      ++         +  ++ L + Q      
Sbjct: 187 VKIPDDLPQHRFLSLSD--DHLDQQFTLYDQNNQLHKVKVNPVVMASNLLMLAQLASQNC 244

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIALLPD I  D   +  LVR++ +   P    +  YP        ++ F +F+  
Sbjct: 245 GIALLPDTIACDYIKSGELVRVLPEWKAPHGIFHAVYPSRRGLLPAVRVFIDFLVE 300


>gi|148254504|ref|YP_001239089.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406677|gb|ABQ35183.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 329

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 134/297 (45%), Gaps = 8/297 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F  VA + SFT AA Q+  S  +IS  I  LE  + ++LF R  R + LTE G 
Sbjct: 6   FSELSAFAAVADTLSFTKAAAQIGCSLPTISHTIKSLEERLDVRLFNRTTRSVALTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      ++ +++     +     KP G LRIA         L   ++ FL  YPDIQ+
Sbjct: 66  RLLAEIQPIFEQVDQAIESINAFRDKPVGTLRIAVPRVFAIRGLGPLIRSFLAEYPDIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L +D+ + DI  +  D  IR    ++    + R +  +   A A+P YL     P S +
Sbjct: 126 ELAVDDTNSDIVRNRFDAGIRSGHRVERDMKVIRVVDDLQFVAVASPDYLAVHPAPSSPE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN I       + ++ + +     R         L VN +   +   + G GIA L
Sbjct: 186 DLGAHNCIRHRFPADETLQPWVFEQGEQRAEIAVD-GSLIVNDFDLALNAALDGVGIAYL 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + +V  +     LVR++ D  + +  ++  +P   +    L+ F +F+    + W+
Sbjct: 245 VEPLVDAHLAEGRLVRVLPDWSSATPGLFLYHPSRRQPPMPLQVFLDFV----KRWR 297


>gi|310819493|ref|YP_003951851.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392565|gb|ADO70024.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 301

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 12/299 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD      + V   V  +G+F  AAE L L+QS +SR ++ LE  VG++LF R AR +
Sbjct: 1   MAFDGKLLSGMGVMAAVVEAGNFVRAAEALGLTQSGVSRAVARLEQRVGVRLFDRTARAV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT++G + +   +     +E        ++    G LR+      G  +L   L EFL 
Sbjct: 61  SLTDEGRRFYEEVAPHLAGIEDAATAATGAAATVRGHLRVNADAAFGHYVLAPRLGEFLA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           L+P++  +L++ ++  D+  +  D A+R  +P + SSLI R++    +   A+P Y+   
Sbjct: 121 LHPELSFELVVRDRIGDLVAEGLDMAVRFGEP-EPSSLICRQIGRSQVLTCASPEYVARR 179

Query: 178 REPLSIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQY 234
             P    EL +  H  I   +        F+W     R + +  +   L VN   S++  
Sbjct: 180 GRPKHPSELARGAHECILVRNT--WTGRHFDWEFHQGREVVQVDVQGRLMVNDSGSLISA 237

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G G+    ++ V+   D+  LV+++       + V+  +        K++AF +F+
Sbjct: 238 MLSGHGVGQPFEFSVRELIDSGRLVKLLPAWSDERYPVHVYHRSREFPAAKVRAFIDFL 296


>gi|300313017|ref|YP_003777109.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075802|gb|ADJ65201.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 305

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 137/298 (45%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W +  +F  VA  GS + AAE L LS ++ SR ++ LE  +G +L  R  R L L+ 
Sbjct: 1   MDRWSQFELFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSR 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R       +++  + ++  +S  PSG LRI +++      +   L  F   YP+
Sbjct: 61  AGEDFYRHCKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++I  N+ +D+     D AIR R+    +++  R+L T      AAP YL     P 
Sbjct: 121 VRLEVIAANRYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H+L+ +           +      R +     S +Q N    I    + G GI
Sbjct: 181 TLDDLAQHDLLVYSHAKEPNRLHLSGRDGSQRTLEIK--SLMQSNDGQIIRAAALEGLGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            + P+YI+ D+     LV ++++   P  ++   Y        +++ F +F+     +
Sbjct: 239 LIQPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVRVFIDFLVQHFEE 296


>gi|295098522|emb|CBK87612.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 299

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 10/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA++  L +SS+S++IS LE +VGI+L  R  R ++LT  G 
Sbjct: 5   LQDMALFALVAEMGSFTAAAQKAELPKSSVSQRISQLEQQVGIRLLNRTTRRISLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E+    E  +  +Q     PSG+LRI     +G  LL     EF L YPD+ +
Sbjct: 65  HYLVHCREMLAASERAEYAIQRLRENPSGRLRITCPAGIGATLLAHMNAEFQLRYPDVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + +  +D+     D A+R  KP Q SSLI R +     +  A+PHYL      +  +
Sbjct: 125 DVSISDDVVDLVESGFDVALRTGKP-QDSSLIGRMIGHCPRYMLASPHYLARRAPLIHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  IT      +   ++   +  +     P  + +  ++ +   +  + G+GI LL
Sbjct: 184 QLVEHRCITH-----RAWSEWLLRSESEDYRYLPDNAHM-TDNLVYARECAIAGAGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P ++++D      LV+++         ++  YP    N+  L ++ +F
Sbjct: 238 PAFLLEDKIEKGALVKVLPAWSVEGNDLWLAYPSRKLNSPALMSYIDF 285


>gi|238028961|ref|YP_002913192.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878155|gb|ACR30488.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 324

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/325 (24%), Positives = 138/325 (42%), Gaps = 29/325 (8%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +R F   A SGSF+ AA ++ +  S++SR ++ LE ++GI LF R  RGL LTE
Sbjct: 1   MDYFSAIRAFLCAAESGSFSKAAHRIAVKTSTVSRYVADLERDLGIALFNRSTRGLVLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V   L+  +      +  P G LR+      G   +  +L E    YP 
Sbjct: 61  GGRLFREHALVVMSALDEARDATSSLNASPRGLLRVTMPRAFGLRHVIPHLPELAERYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +  ++ +  +++     D AIR+   +  S LI R+L T    A A+P Y++    P 
Sbjct: 121 IDVDAVMTDTTLNLIDAGIDLAIRIGA-LPDSQLIARRLATHRRVACASPAYVERHGMPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-----------------RPIGEPRISCLQ 224
           + + L  H  + F  +           A V                  R +       L+
Sbjct: 180 TPEALAGHATLRFPLVSDDRWWFIRRQARVGQAPQETGDAGDSAPGKARDVAVRLSGRLR 239

Query: 225 VNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSF----TVYFCYPEAL 277
           V+   ++ Q  + G GIALLP + +     + +L+ ++ D    +      ++  YP   
Sbjct: 240 VDDAEALRQLAIAGCGIALLPTWAIGSALRDGSLLHLLPDWDAQATRAASAIWAVYPPKK 299

Query: 278 KNTGKLKAFRNF---IFLKARDWKF 299
             + K++AF +F   +F +   W F
Sbjct: 300 TVSSKVRAFIDFQAEVFARPGYWDF 324


>gi|209694777|ref|YP_002262705.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
 gi|208008728|emb|CAQ78918.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
          Length = 311

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 137/291 (47%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +FY +A++GSFT AA+Q+ +S S +S+Q+  LE E+ +KL  R  R LTLT+ G + 
Sbjct: 7   QMVIFYALAKAGSFTAAAKQMGVSTSHVSKQLGILEAELNVKLVQRTTRSLTLTDAGQQF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++Y  +      +     + +G LR+  +   G   +   + +    YPD+Q+++
Sbjct: 67  YLYCEKMYSAMTEASAIMDNERDEVAGILRLGLSQSFGTMHIIPAIDKLRHQYPDLQVEV 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+  D  D  +   + +     + ++L   H    A+P YL +   P   Q+L
Sbjct: 127 RLFDHRADMLKDGLDLWVTNFEDLP-EGYVAQRLADSHFVLAASPDYLIDKAVPHHPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN +T+     +  +  NW  +        ++S    V+   ++    + G G+A L 
Sbjct: 186 TEHNCLTYQS---RHRDYSNWDFSKGNEALCVKVSGNYCVDLAEAVRDAAISGWGVAYLA 242

Query: 246 DYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            Y++    ++  L++++ D   +    +Y  YP       K+ A  +F+  
Sbjct: 243 SYLLTNEFNDGKLIQLLPDWKASQKMPIYAVYPSRKHLPRKISAVIDFLRE 293


>gi|293609442|ref|ZP_06691744.1| regulatory protein [Acinetobacter sp. SH024]
 gi|292827894|gb|EFF86257.1| regulatory protein [Acinetobacter sp. SH024]
          Length = 300

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 137/296 (46%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA   S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADIEVFLIVAEKLSISAAAIYLATTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERAIQGKQLQISGKIKLSVPTTYGHYRLPELLQKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR  + + SS+LI R L    +   A+P YLK  
Sbjct: 121 QYPDIQIEVSISNRNVDLIAEGFDLAIRQGQ-LPSSTLIARPLELAPLQLVASPEYLKRM 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P ++++L+ H  I F       +  + +    +     P    L     L ++     
Sbjct: 180 GVPQTLEDLNHHQCIAFELPSTGKVTPWFFKNGDNEIQWIPSNRILVKEDILGVVSLAES 239

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI     +IV +      L  ++E     +      Y +    +   +A  NF+
Sbjct: 240 GLGICQSYSFIVNEKIRQGKLQPVLEGYAGHTRPFSLLYAQHKHMSSATRALINFL 295


>gi|262403089|ref|ZP_06079649.1| transcriptional regulator [Vibrio sp. RC586]
 gi|262350588|gb|EEY99721.1| transcriptional regulator [Vibrio sp. RC586]
          Length = 301

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 136/292 (46%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGEIFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P
Sbjct: 125 DVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPVYFTQCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLAEHRCLT-GSVKRWSYQHQETKQTLD----VPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFQDWHIPSVGFSLIYHKDKYQPVRLKRFIEF 290


>gi|53725283|ref|YP_102793.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67641372|ref|ZP_00440152.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121598414|ref|YP_992871.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124386275|ref|YP_001026210.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126453195|ref|YP_001066001.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167003149|ref|ZP_02268939.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167738858|ref|ZP_02411632.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167845986|ref|ZP_02471494.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167894564|ref|ZP_02481966.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167911204|ref|ZP_02498295.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167919227|ref|ZP_02506318.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|242317088|ref|ZP_04816104.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254177818|ref|ZP_04884473.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254188577|ref|ZP_04895088.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199741|ref|ZP_04906107.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254206065|ref|ZP_04912417.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254261080|ref|ZP_04952134.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254297843|ref|ZP_04965296.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254358436|ref|ZP_04974709.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52428706|gb|AAU49299.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|121227224|gb|ABM49742.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124294295|gb|ABN03564.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126226837|gb|ABN90377.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|147749337|gb|EDK56411.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147753508|gb|EDK60573.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148027563|gb|EDK85584.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157806982|gb|EDO84152.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157936256|gb|EDO91926.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698857|gb|EDP88827.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|238522295|gb|EEP85740.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242140327|gb|EES26729.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243061245|gb|EES43431.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254219769|gb|EET09153.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 301

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGEQPR-----VEWRFDGPHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W++
Sbjct: 239 KSIWDVGPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 298


>gi|296114396|ref|ZP_06833050.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295979157|gb|EFG85881.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 297

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 125/294 (42%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      L  F  VA +GSF+  + +   SQ +ISR I+ LE   G  LF R  R L +T
Sbjct: 1   MDL-LSALHSFVRVAATGSFSAVSRETGASQPTISRHIALLEAHYGATLFARTTRSLMMT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L     EV   LET +  L       SG +R+  T   G   L G L + L  +P
Sbjct: 60  EDGRSLLPHAYEVLEILETAETALGRRRASVSGLVRLGITTAFGLY-LTGKLGKLLEEHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L++ +   D+  +  D A+R+   I   SLI R+L ++  +  A+  YL     P
Sbjct: 119 DLSVELVMRDGFGDLVEEGLDLAVRVGS-IAEGSLIARRLGSVRRYVVASSDYLARRGTP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  ++L  H  I +     +    F+                 + NS  +++Q    G G
Sbjct: 178 VHPRDLLNHPCIAYSYGGSRHDWHFD---CKGEENVVAASGPFRANSSEAVLQAVRSGLG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           I +LP + V+++     L+ +  +   P    Y  +        + +   +F+ 
Sbjct: 235 IGMLPSFQVEEDVASGRLIHLFPEWTVPEMPFYAVHTGPRTLPLRTRTVLDFLI 288


>gi|262278706|ref|ZP_06056491.1| transcriptional regulator LysR family [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259057|gb|EEY77790.1| transcriptional regulator LysR family [Acinetobacter calcoaceticus
           RUH2202]
          Length = 313

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G KL  R  R   LT+ G+
Sbjct: 10  LHAMHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGA 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V   ++  + E+  ++ KP G+LR+ +    G + +   + EF   YP++ +
Sbjct: 70  TYAERCRQVISIVDEAESEVTGTASKPKGRLRVLSMGSFGHHYVFPVMAEFCKNYPELTV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +        D+     D ++ L + +  S  + R++ TI     A+P YL+    P S +
Sbjct: 130 EYTTSQYVPDLLAKGVDVSLYLTESLTDSRFVARRIGTIFSVLCASPAYLEKYGVPKSPE 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +    + P    D++ L              L  ++   ++       G+ALL
Sbjct: 190 DLKNHACLRL--VNPSITADWHLLNANGESYQIDIGGQLIADNPELLLDVVQQDMGVALL 247

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +   D   N  L  I+ +  +P   VY   P       K +A+ +++
Sbjct: 248 PMFSALDAVQNGRLCHILPEWRSPDIGVYTLLPSRHFIDAKTRAWLDWV 296


>gi|330807386|ref|YP_004351848.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375494|gb|AEA66844.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 303

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 138/301 (45%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L++F  V   GS + AAEQ+  + S++SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQIFVCVIECGSISAAAEQVGQTPSAVSRTLSRLEAKLDTTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  +++  +  L      P+G+LRI        + +  ++ EF   YP
Sbjct: 61  EEGKYFFEQAKGILDQMDELEERLSSRQKNPAGRLRINAASPFMLHAIVPHIDEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ++L  ++  ID+     D AIR+   +  S+L  R L    +H  A+P YLK    P
Sbjct: 121 DIQLELNSNDLIIDLLEQSTDIAIRIG-TLTDSTLHARSLGCSPLHILASPAYLKQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL  H L+ F             +   DR + +P IS    +S  ++    + G G
Sbjct: 180 SSVAELAGHALLGFAQNEGLNQWPLRHV-HGDRWLIQPAISA---SSGETVRHLALQGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L D++ +++     L  ++ D  +     +   Y    +   +++ F +FI  K   
Sbjct: 236 IACLSDFMTREDIRAGRLKVLLADANSGYRQPINAVYYRNSQLALRIQCFLDFIQDKLAG 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|167824453|ref|ZP_02455924.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
          Length = 301

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVVAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGEQPR-----VEWRFDGSHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W++
Sbjct: 239 KSIWDVGPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 298


>gi|148255791|ref|YP_001240376.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146407964|gb|ABQ36470.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 301

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 133/296 (44%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L+ F  V  +GSFT AA  L L Q +I+++I+ LE + G +LF R  R L  T 
Sbjct: 1   MDRIDALQTFIRVMEAGSFTQAAADLGLGQPAITKRIALLEEQFGCRLFVRTTRKLRPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +  ++ ++  E+    E+  +   +    PSG LR+      G+        E+   YP+
Sbjct: 61  EADRVLKLAKEIVTLFESAGLPSPKRVGAPSGTLRMTVPTSFGRYFFGDIFAEYGRRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +    + +D+     + AIR+   + SSSL+ R++ T+     AAP  L   R P 
Sbjct: 121 VRLDIRFTEQFVDLVETGTELAIRIG-VLSSSSLVARRVGTVKRLLVAAPALLTRHRPPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +   +T+  L PK    F            P    L  +    +    + G G 
Sbjct: 180 LPNDLRQLPCVTYSRLSPKNEWSFESETGRHVVGITP---SLTCDDADIMSLAALEGLGA 236

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+LPD+       +  LV ++ D   PS  ++  YP+    + + + FR+ I  +A
Sbjct: 237 AVLPDWCAVGHIASGKLVHLLPDYDVPSLPLHVVYPDPQWMSHRARLFRDLIIERA 292


>gi|238786984|ref|ZP_04630784.1| transcriptional regulator [Yersinia frederiksenii ATCC 33641]
 gi|238724772|gb|EEQ16412.1| transcriptional regulator [Yersinia frederiksenii ATCC 33641]
          Length = 298

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 10/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GSF+  A QL +S S+ISR +S LE  + I+L  R  R L L++ G ++ 
Sbjct: 1   MAIFVKVVETGSFSAVARQLGVSTSAISRSVSRLEKALTIRLLQRTTRKLRLSDSGEEVF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  + + +   +      + + +P G +RI+    +G+ ++  +L EFL  Y  I +QLI
Sbjct: 61  KRCNAMLNAANSVMEVGGQYNQEPEGLIRISVPKAVGRFVIHPHLPEFLRRYSKINVQLI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  ++ D AIR+        ++ R+L+ I     A P YL     PL   +L 
Sbjct: 121 LDDRYVDLIDEHVDLAIRITNQ-PPPGMVGRQLMNIEHLLCATPEYLATHGVPLHPHDLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ I  G+        F       + I          N     +   +   GI  LP +
Sbjct: 180 HHSCIYLGETPGDARWKFR---QGSKAITVAVQGRYAANHTGVRLDAVLQHLGIGSLPYF 236

Query: 248 IVK---DNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +       +V+++ +     + S  ++  YP       KL+ F ++I 
Sbjct: 237 TARTALQQGLIVQVLPEWRFISSYSGGLWLLYPPTRYLPAKLRVFIDYIV 286


>gi|330808800|ref|YP_004353262.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376908|gb|AEA68258.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 302

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 145/299 (48%), Gaps = 7/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LRVF  VA+ GSFT AAEQL +++S  S  +  LE +VG +L  R+ R + LT  
Sbjct: 1   MELNDLRVFCRVAQLGSFTKAAEQLGVAKSRASAIVRTLEADVGSRLLQRNTRSVRLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+  + +  Q   + ++    G++R+      GQ L+  +L+E L  +P +
Sbjct: 61  GELFFERCRELLRESDHLQGMFRPAAGALQGRVRLDMPSLFGQELVMPHLQELLSAHPLL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++ ++++ +D+  +  DC IR+  P+  S L+ RKL T+     A+P YL+    P S
Sbjct: 121 DLRISINDRRVDMIQEGVDCLIRIG-PLPDSDLVARKLGTMKACNLASPAYLRQYGVPSS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +L  H +I + + +    E+  W   VD  +   P +S L +NS   ++  C  G GI
Sbjct: 180 LTDLAGHRVIHYANNLRS--EEAAWRYAVDGEVQSVPMVSALAINSGSLLLAACRNGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +     +   D+  LV ++ +   P        P       +++A  N++    R +
Sbjct: 238 MQVSVPASQRLIDSGELVEVLPEFRPPPIQASLLLPHRRHVAPRVEAVLNWLTQVTRPY 296


>gi|323494653|ref|ZP_08099756.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           brasiliensis LMG 20546]
 gi|323311086|gb|EGA64247.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           brasiliensis LMG 20546]
          Length = 294

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V   GSF  AA    LS + I + +S LE  +G +L +R  R  +LTE
Sbjct: 1   MDKLTSMKVFAYVVEHGSFRSAAHHFDLSATMIGKHVSFLEQSLGTQLIHRTTRKQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +   +  +Q    +P G +++   +  G+ +L   + +FL  YPD
Sbjct: 61  AGKIYYQECHRIIEDITNAENLIQTLVNRPIGTVKVNCPVTYGKKVLAPVVADFLAQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LILDN  ID     AD  IR+ + +  SSL+ R+L    M   AAP YL    +  
Sbjct: 121 INVELILDNNLIDPFRSEADVIIRIGE-LVDSSLVARRLGDYQMTYCAAPEYLDKYGKID 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L +H+ + F     +  +  N  +           + L  N+   +    + G G+
Sbjct: 180 SLDDLSQHSCLGFQYHQGESQQVINLPSNTFSHSN----ARLTSNNGDILKYAAIQGCGV 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L P  +V+    +  L+ +++  +  +  ++  Y  +   + K + F +F+ 
Sbjct: 236 LLQPKILVEPEIQSGQLIEVLQHELPQAKPIHLLY-RSKHLSLKNRTFVDFVV 287


>gi|150397448|ref|YP_001327915.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150028963|gb|ABR61080.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 320

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 130/292 (44%), Gaps = 9/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + VF  V   G F+ AA +L ++ S++S+ +  LE+ +G++L  R  R ++LT +G+ 
Sbjct: 5   EAMAVFLAVVEEGDFSAAARRLRMTPSAVSKIVGRLESRLGVRLLQRSTRSISLTAEGNS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +E  ++ +Q    +P G+LR++     G  L+   L  F+  +P I+++
Sbjct: 65  YSESVRRILGDMEEAELAIQPG-AEPRGRLRVSLPSAFGHRLIVPMLPAFIGRHPAIELE 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D+    A  A+R+      S+L+ R+L         AP Y +    P+   +
Sbjct: 124 LDFTDAIVDLVNGDAHVAVRVAAQG-DSTLVTRRLAPNRRVICGAPDYFERHGVPMRPDD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KH  +         + +F+              S ++ NS  ++ +  + G GI  L 
Sbjct: 183 LLKHICLGISSRGGLNLWEFD---EAGGRRSMRIRSSIEANSTEALRRLALAGMGIVRLS 239

Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +V  +     L  ++ D     +  +   YP     + +++ F +F+  +
Sbjct: 240 EMLVGQDIRAGRLKPVLTDCNHAEAEPISVVYPHRRFLSPRVRVFVDFLAEQ 291


>gi|319791811|ref|YP_004153451.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594274|gb|ADU35340.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 352

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 134/297 (45%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D+LR+F  VA   SF+ AA+QL L+++ +S  +  LE  +G +L  R  R + LTE 
Sbjct: 1   MNTDELRIFSRVAELASFSRAADQLGLTRARVSVAVQHLEKRLGTRLLQRTTRSVRLTED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +   + E      + ++   +G+LRI     L ++L+   L EFL  +P +
Sbjct: 61  GERFLDRCRDYLSEGEQLATMFRANTGGLTGRLRIDLPATLARDLVIPRLPEFLARHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I +   ++ +D+  +  DC +R+   +  S LI R L  + M   A+P YL+    P +
Sbjct: 121 EIGISTTDRRVDLVNEGFDCVLRVG-VLGDSELIARPLGFMRMANAASPAYLQAHGTPHT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + EL +H ++ F   +      + +  A   R   +P  + + VN   +     V G G+
Sbjct: 180 LAELAQHRIVHFAQTLSPNDAGWEYFDAAQGRYRIKPVRAIVTVNGTDAYNAAAVAGLGL 239

Query: 242 ------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                  LLP +      +LV +M         V   Y    +   ++ A  +++  
Sbjct: 240 IQAPVGGLLPCFAA---GSLVEVMPAFTARPMPVSLVYVNRRQLAPRVLAVMDWLAE 293


>gi|149190788|ref|ZP_01869053.1| LysR-family transcriptional regulator [Vibrio shilonii AK1]
 gi|148835350|gb|EDL52322.1| LysR-family transcriptional regulator [Vibrio shilonii AK1]
          Length = 300

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 138/296 (46%), Gaps = 6/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L VF  + + GS T AA++L ++  S+S  +  LE E+G+ LF R  R + +TE G 
Sbjct: 6   FNQLIVFNTIVQEGSITRAAKKLEMAPPSVSNALKALEQELGLPLFTRTTRRVEVTEAGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH  T     +L      + + S  P+G +R+     + Q L++    EF   YP IQ+
Sbjct: 66  LLHERTLHSISELSLAFESVSDLSRDPTGTVRVTMPRFVYQYLIEPIYAEFCHQYPHIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           ++ + +  IDI  +  D  IR    ++   ++ R L T +    +A+P Y+++  +P   
Sbjct: 126 EISVSDATIDILNENFDLGIRFGNKVE-EGMVARPLTTSMKEAFFASPAYIEHYGQPSCP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H LI +  +    +     L      +     + + VN    ++   + G GI  
Sbjct: 185 DDLKHHKLIQYRFISSNKIAPL-LLNKQGEMLSVEMPTSMVVNDTNLMVDAAIKGLGIGR 243

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L + +++ +     LV I+ED   P   +Y  + +  +   +++   +F+  K + 
Sbjct: 244 LVEPMIQSHIAQKQLVPILEDYWYPYSGLYVYFHKNTQKAKRVRVLIDFLIEKTKQ 299


>gi|34497625|ref|NP_901840.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34103481|gb|AAQ59843.1| probable transcriptional regulator, LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 306

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 129/295 (43%), Gaps = 6/295 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V ++G+ + AA++L +S +++SR+++ LE  +GI+L  R  R   +T +G   
Sbjct: 6   DVAFFMEVVKAGTLSGAAQELGVSTAAVSRRLANLEVRLGIRLLNRTTRRAAVTYEGELY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  +LE  +  L  +   P G LR+  T   G+  +   + +F+ L+PD+ +QL
Sbjct: 66  LAEGKKILGELEELEQRLASAHSVPKGLLRVNATFGFGRQFIAPAIADFVELHPDVDVQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +++  D  D  IR    +  + L  RK+        A+P YL+    P S  +L
Sbjct: 126 SLSDRPVNLIEDGFDVCIRFGD-LPDARLTSRKIACNRRLLCASPGYLERFGIPASPMDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I   +           L +            +  N     + + + G GI L  +
Sbjct: 185 QRHRCIVIRESDETYGAWH--LYSGAAQANVKVRGTVSTNDGEVAVDWALRGLGILLRSE 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + V     +  L  ++ D   P   ++  YP     + K++AF + +      ++
Sbjct: 243 WNVAPYLRSGRLREVLGDWRFPPADIHAVYPMKSNLSAKVRAFVSHLDKHFEPYR 297


>gi|206560928|ref|YP_002231693.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|221199446|ref|ZP_03572490.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205652|ref|ZP_03578667.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|198036970|emb|CAR52885.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|221174490|gb|EEE06922.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180731|gb|EEE13134.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 305

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 123/294 (41%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + VF      GS   AA +   S +   + +S LE+ +  +L  R  R L LT+
Sbjct: 1   MDQFTCINVFVAAVDEGSLAAAARRFGFSAAMAGKYVSELESTLNARLLQRTTRRLNLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   L     E  +S     G LRIA  +  G   L   +  ++  +P 
Sbjct: 61  VGRAYYDRCVQILDALAEANREASDSQTIARGVLRIAAPVTFGALHLGNVVARYMERHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + L ++ +++    AD AIR+   +  SS++ RK+    M   A+P YLK    P 
Sbjct: 121 VNVDVSLSDRYVNLLETGADLAIRIG-TLADSSMVARKIAPCRMIVCASPAYLKRHGTPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +EL +   +TF + +     D+      DRP        +  N+   ++   + G+GI
Sbjct: 180 TPEELGQAQRLTFSEAVSSG--DWTLRDEKDRPHVIDGTCRMSANNMQMLLASTLAGAGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A  P ++         LV ++    T   T+   YP       K++ F + +  
Sbjct: 238 AYGPTFVFGKYVARGELVALLPTYRTTELTIQAVYPSTRHVPLKVREFIDDLVE 291


>gi|194444827|ref|YP_002042855.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403490|gb|ACF63712.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 300

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 7   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 67  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLPTFLHQYPGIALEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 127 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 186 ASHAMVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         V   YP     + ++  F  ++    ++
Sbjct: 245 IAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKE 297


>gi|186474163|ref|YP_001861505.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196495|gb|ACC74459.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 307

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 124/298 (41%), Gaps = 4/298 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +  F   A +GSF+ AA +L L+ + +S+ ++ LET +G++LF+R  R LT+T  G 
Sbjct: 4   LNLIESFIQTAETGSFSAAARRLGLTPAGVSKNVARLETHLGVRLFHRSTRKLTMTPGGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L       +  L+       +   KPSG L++   +  G+  L   L EFL  YPDI  
Sbjct: 64  QLWADAGAPFASLQDAFARAAQHDGKPSGVLKVGMALSFGREYLVPLLGEFLERYPDIVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+     D AI     +    ++ R++        A+P Y+K    P    
Sbjct: 124 DWHFDNRAVDLIAGGFDAAIGAGIELT-QGVVAREIARPCTIVAASPAYMKGRPLPAHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL + + I         +  +     V           +  +   +I    + G GIA L
Sbjct: 183 ELAELDGIARRSSSTGRLRAWTMRNQVGEEALAECRVRMIFDDPEAIAHAAMQGLGIAFL 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           P        ++  L+R++     P   +   YP       K + F +FI    R+ + 
Sbjct: 243 PTPHAAPWIESGQLMRLLPGWHAPISPLTLYYPNRKLLPAKTRVFIDFIVEAFRERRL 300


>gi|260462486|ref|ZP_05810693.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031682|gb|EEW32951.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 297

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D ++L  F  VA   SFT AA +L ++QS++S  I  LE  +GI+L  R  R +  T  G
Sbjct: 5   DLNQLTWFQAVAEERSFTRAAAKLGVAQSTLSHTIKQLEARMGIRLLTRTTRNVATTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +    ++E     L     KPSG +R+  +    ++++   LK+ L  YPDI 
Sbjct: 65  ERLLRTIAPRIGEIEDEIAALMAFREKPSGSVRLTLSDHALESVVWPKLKQVLSAYPDIG 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LILD+   +I  +  D  +RL + ++   +  R      + A  +P Y      P+  
Sbjct: 125 VELILDSTFRNIVEEGFDAGVRLGESVEKDMIAVRIGPDWRLVAVGSPDYFAAHGVPVHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L +H  I         +  + W    D      R+   L  N+  +++   V G GIA
Sbjct: 185 QDLVRHVCINMRQETAGGL--YAWEFEKDGQALRVRVDGQLTFNNTYAMIDAAVCGYGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+ IV+    +  LV+++++        +  YP   +N    K   + +  +
Sbjct: 243 YVPENIVERQIASGLLVQVLDEWSPLFDGYFLYYPSRRQNLPAFKVIIDALRHR 296


>gi|86356442|ref|YP_468334.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280544|gb|ABC89607.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 294

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 136/287 (47%), Gaps = 6/287 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA   SF  AA+ L +S  ++SR +S LE  +G +LF R +R L LT+ G +L    
Sbjct: 2   FAKVAEERSFVRAAQTLGVSVPTVSRAVSRLEQRLGARLFNRTSRQLALTDFGLRLVDSA 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +Y + E  +   +E + +P G +R+A  +D G   L   L +F  L+P+I I L + +
Sbjct: 62  ARIYAEAEMAEDAARELATRPKGLIRLAAPMDFGTRWLAPILPDFFELFPEISIDLHMSD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             +DI  D  D A+R+   +  SSL+ R+L  +     AAP YL     P   +EL  H+
Sbjct: 122 AVVDIVGDGFDAALRIA-VLPDSSLVARRLTPVDRFILAAPAYLDRYGVPEHPRELAAHH 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + +     + +  +       +         L+  +  +++   + G G+  LP+++  
Sbjct: 181 CLGYAYRARQDV--WRLRNGEGKEEVIVPSGSLRATNSQALVPMALRGLGVIELPEFLAH 238

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           D   +  L  I+ D   P+  +YF  P A     K++   +F+  + 
Sbjct: 239 DHLVDGQLTPILPDWTLPTGALYFVTPSARSRPAKVEVLSDFMMARL 285


>gi|330949902|gb|EGH50162.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 297

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G 
Sbjct: 6   LNDLQAFLQVARDQSFTKAATRLGVTPSALSHTMRGLEERMGLRLLARTTRNVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI
Sbjct: 66  RLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q
Sbjct: 126 EICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I            + W    D R +          NS + ++   + G G+A 
Sbjct: 186 DLTQHTCINIRHSPNGSC--YAWEFEKDSRKLNLRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +PD + + +     L  ++ D        +  YP   + +    AF  
Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVE 291


>gi|115352045|ref|YP_773884.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282033|gb|ABI87550.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 305

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 133/303 (43%), Gaps = 7/303 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+  + D L VF  V    SF+ AA  LHL+  ++S+QI+ LE  +G  LF R+ R L +
Sbjct: 4   MALRNLDDLAVFVHVVERQSFSAAARDLHLAPKTVSKQIARLEQALGTTLFERNTRNLRI 63

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G  +          LE  Q      S + SG +R+      G+  +   + +F  L+
Sbjct: 64  TGEGRAIAERARVALAVLEEVQELATGGSQELSGTIRLTAPTPFGRKFVAPAIHDFCRLH 123

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +   L L ++  D+     D AIR+ + +  S L+ R++        A+P YLK    
Sbjct: 124 PRVGFDLRLSDQVQDLYSGDLDLAIRMGE-LADSRLVARRVADNRRILAASPDYLKAHGR 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   +EL++HN + F    P  ++    L    R         L  ++   +  +C+ G 
Sbjct: 183 PTQPEELERHNCLVFA--YPGLLQSIWPLRRGRREKPIAVSGTLCSDNGDVLHAWCLAGL 240

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI+L   + + +   +  LVR++ D       +            +L AF +F+F + + 
Sbjct: 241 GISLRETWDIHEELRDGRLVRVLPDWEATPSKISIVRARREPVPRRLTAFSDFLFDRWQQ 300

Query: 297 WKF 299
             +
Sbjct: 301 APW 303


>gi|300693770|ref|YP_003749743.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299075807|emb|CBJ35116.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 292

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 129/297 (43%), Gaps = 11/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V ++  F  AAE L +  S++SR+I  LE  +G++L +R  R + LTE G 
Sbjct: 4   LNDMALFVEVVKAKGFRGAAEALGMPNSTLSRRIGALEKAIGLRLLHRTTRKIELTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +      +L E   +PSG LR +  +D     L   + EF  LYP I  
Sbjct: 64  IYFERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVIYLAPLIAEFAGLYPGITF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L  + +D+  +  D AIR+ +P +SS LI R L  +  H YA+P YL+   EP +  
Sbjct: 124 DFDLTPRQVDLVSEPFDVAIRMGEP-ESSQLIARPLALLQAHLYASPGYLERSGEPATPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  +    +    +      ATV             +NS   I +   L  GI L+
Sbjct: 183 DLKRHECLGMLKVGSWTLHQGAQTATVSVG------GRFTLNSVGMIRRLATLDMGIILV 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P+ IV D+     L R+M         VY    E      K + F  F+  +    +
Sbjct: 237 PEAIVADDLASGRLRRVMPGWHGKPMPVYAIT-ETRLLPAKTQRFIEFLRERLARSR 292


>gi|328545095|ref|YP_004305204.1| LysR family transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326414837|gb|ADZ71900.1| LysR family transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 308

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 125/289 (43%), Gaps = 14/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS + A  ++ LS + +S++I  LE  +G +L  R  R + +TE G   +
Sbjct: 1   MEIFARVVSAGSMSAAGREMALSPAVVSKRIRRLEDRLGTRLLQRTTRQIAMTEAGQGFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  +   S +  G L++      G+  +   L  FL   PD+ + L 
Sbjct: 61  ERVVAILASVEEAESFVTRGSAQARGTLKVTAPTSFGRLHIAPYLGRFLEDNPDLAVNLD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI  +  D AIR+ + +  SSL+ R+L  +H    AAP YL    EP SI++L 
Sbjct: 121 LADDFVDIVGEGYDLAIRIAE-LSDSSLVARRLAPVHRILCAAPSYLSRYGEPRSIEDLQ 179

Query: 188 -KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  I      P       W     R I   R    ++ NS   + +  + G G+AL  
Sbjct: 180 ENHVCIAAAAQDP-------WRLMGPRGIEIVRTGAPVRTNSSEVVREALLAGVGVALRS 232

Query: 246 DYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
            + +     +  L  ++          ++  YP       K++ F +F+
Sbjct: 233 TWDIGPELRDGKLRIVLPQYRASKDVGLHAVYPSRRFLPAKVRVFIDFL 281


>gi|260549183|ref|ZP_05823404.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407911|gb|EEX01383.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 298

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 133/292 (45%), Gaps = 10/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +  +F  VA+  SF+  A +L L +S+++  I  LET  G++LF+R  R ++LT+
Sbjct: 1   MDRLQQFFIFTEVAKRQSFSEVAHRLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPD
Sbjct: 61  DGQRILPECQNLLLDYEQLEQLIQTQKQHYRGTLKISMPSRIVHQVIIPELSDFYHRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL   +   D+     DC +R+ + + SSSLI R +  + M   A+  YL+    P 
Sbjct: 121 IHLQLNSSDDMTDLIEKGIDCVVRVGE-LDSSSLIARFIGHLVMVNCASRGYLEQYGMPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L +H LI +   + +   +F     V +       S L VN+  +       G GI
Sbjct: 180 QLEDLSQHKLINYVGAVGEKQGEF-----VYQGGSVMMDSALSVNNTEAYSAAACAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V+D      LV ++     PS  +   YP       +L+ F N++
Sbjct: 235 IQVPYYDVQDKIEQGILVEVLSAYSAPSLPLNILYPNRTYIPKRLEVFMNWV 286


>gi|239503659|ref|ZP_04662969.1| transcriptional regulator [Acinetobacter baumannii AB900]
 gi|193077051|gb|ABO11810.2| putative transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 301

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 1   MS-FDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           MS FD +   +L +F  V   GSF+  A   +++ S++S+ IS LE  +G++L  R  R 
Sbjct: 1   MSYFDINRSGELAIFIRVVELGSFSAVARACNMTPSAVSKLISRLEKRLGVRLLNRSTRQ 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
             LT +G + +    ++ + L+  +  +  +   P G++RI T+     + L   +  F 
Sbjct: 61  FQLTSEGCQFYEQGIQILNGLDELEQSVTANH-IPKGRIRIHTSFSYWTHFLLPCISLFN 119

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             Y +I+++  L ++ I++     D AIR   P++SS+L+ R L + +     +P Y++ 
Sbjct: 120 QRYQEIELEAHLSDEVINLVEQRIDVAIRTG-PLKSSNLVARSLGSTYKQYVCSPLYIEK 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYC 235
              P    EL +H L+     +    ++  WL     + I       L+VN   +I+Q  
Sbjct: 179 YGCPEHPDELHEHQLL----DVSYQRQNKTWLFKKATQEISLTPSKVLKVNHGEAILQLA 234

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYP-EALKNTGKLKAFRNFI 290
           + G+GIA L ++ ++       LV+I+ED  I  S   +  +         +++ F +F+
Sbjct: 235 LAGAGIAQLNEFQIRNALQQKQLVKILEDWNIHASEEFHAVWIGHDKYVPNRVRTFLDFL 294

Query: 291 FLKA 294
              A
Sbjct: 295 VEHA 298


>gi|149927090|ref|ZP_01915348.1| transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
 gi|149824311|gb|EDM83531.1| transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
          Length = 315

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 1   MSFDWDKLRV---FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS ++++L+    F +V  +GSF  AA+    + SSISR I+ LE  + I+L  R  R +
Sbjct: 1   MSNNFNELQAAETFLMVVNTGSFAAAAKLKGENPSSISRAIAQLEAHLNIRLLNRTTRQV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFL 116
            +TE G         +    +  +  + +    +P G +RI+  + +G+ +L   L EF 
Sbjct: 61  KITEAGEIYKLYAQRMLESQQEARDAITQLQSGQPHGTVRISLPVIVGEKILAPRLSEFH 120

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YPD+Q+Q+ L N++  I  +  D A+R+   +Q S+L  RK+ TI    YAAP YL+ 
Sbjct: 121 AKYPDVQLQVDLSNRNAMIVEEGFDIALRVGL-LQDSTLRARKVATIWRKLYAAPAYLEK 179

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYC 235
              P +  +L  H  I F     +   +F W     +P  + R IS L  +S + +++  
Sbjct: 180 HGVPQTPADLVHHQCIAFSQRGDQKEWEF-WPKNGAQPSQKHRVISWLTCSSPMMVVRAI 238

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDV-----ITPSFTVYFCYPEAL--KNTGKLKA 285
             G G+    D++++       LV I+ D       T    +Y  +P  L  + + K + 
Sbjct: 239 QSGLGLGRSADWMLQGALARGELVEILSDWYCDNPATGGLPMYLVFPPGLSSQLSLKTRV 298

Query: 286 FRNFI 290
             +F+
Sbjct: 299 VADFL 303


>gi|254228478|ref|ZP_04921904.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262393653|ref|YP_003285507.1| putative LysR family transcriptional regulator [Vibrio sp. Ex25]
 gi|151939066|gb|EDN57898.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262337247|gb|ACY51042.1| putative transcriptional regulator LysR family [Vibrio sp. Ex25]
          Length = 291

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +   S +  +L T   E+ +     SGK++I+   +L + ++      F+  YPDI
Sbjct: 61  GERFYHECSPLLQRLTTAAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNSFMKQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L  +N    +     D   R+  P + SSLI RK+  +     A+P YL +   P  
Sbjct: 121 NIELTTENNADKLDPTEWDVIFRVG-PQRDSSLIARKIGEVKDILVASPDYLASNPAPNH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H+L+         +  +  + +    +        Q N+   +   C  G GI 
Sbjct: 180 AEELSNHSLL-----KGYPLIKWTLINSKGESVVNVDRGRFQANALNVVRSACSEGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD ++K   ++ +LVRI+ D       +Y  Y        K++ F +F+  
Sbjct: 235 LMPDVMIKEYIESGDLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 287


>gi|114563446|ref|YP_750959.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334739|gb|ABI72121.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 289

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 138/296 (46%), Gaps = 12/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  G++  AA + ++S++ +S+ I+ LE  +G+KL  R  R   LTE
Sbjct: 1   MDKLTAMQVFSHVAEQGNYGTAAHKFNISRTMVSKHINQLEAYLGVKLINRTTRQQELTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +E  +  LQ  S  P G +RI   +  G  +L   + +FLL YP 
Sbjct: 61  SGHVYYQECQIILMAIEQAENTLQSMSSTPKGTIRINAPVSFGNIVLAPIVNQFLLQYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L LDN  ID  +D+AD  +R+   +  S+LI R ++   M   A+PHYL       
Sbjct: 121 IDVELRLDNNLIDPMVDHADVVVRIGN-LDDSALIGRHIMNYEMVFCASPHYLAQHSPIA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI +L +H+ + F             LA     +   R   L  NS L ++Q  + G GI
Sbjct: 180 SISDLPQHDCLGFSYSKSAS------LAVAHSQLFGKRSFRLLSNSGLVLIQAAIDGLGI 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L P  +V++      L+ +   +   +  ++  Y +      K +   +FI  + 
Sbjct: 234 ILQPQIVVQEAIQAGLLINVSALIPPDAMPIHLLY-KDKNLPLKTRTLIDFIIRQL 288


>gi|251791329|ref|YP_003006050.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247539950|gb|ACT08571.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 298

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++++ F  V   GS T AA QL  + S ISR +  LE+++G+ L +R  R L L+
Sbjct: 1   MKVTLEEMQAFVAVVDGGSVTAAAGQLGQTASGISRALGRLESKLGMTLLHRTTRRLALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   +V  K+E  + ++     KPSG+LRI  T  L Q+ +   + EF   YP
Sbjct: 61  EEGQIFLQHARDVLQKVELAEEQIALRRRKPSGRLRINATASLMQHFIVPLIPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D++ ID+     D AIR+ + ++ SS+  R L    +   A+P YL     P
Sbjct: 121 CISLELNTDDEIIDLLEQRTDIAIRIGE-LRDSSIHARPLGATRLWILASPEYLNRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LS++ L  H L+ F       +         D PI    +  +  ++   + Q    G G
Sbjct: 180 LSVEALSGHTLLGFTQSASLNLWPLRSALGDDYPI----VPTIAASNGEILRQLAQRGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  L D++ +D+     L +I+ E+       +   Y        ++ +F +F+  K 
Sbjct: 236 IVCLSDFMTRDDVAAGRLGQILVEETRDKRVPINAVYYRNTALASRIVSFLDFLSEKV 293


>gi|323494253|ref|ZP_08099365.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323311416|gb|EGA64568.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 300

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 142/300 (47%), Gaps = 12/300 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +   +R F ++A+ GSFT AA  L +S+S +SRQIS LE+++ + L  R  R L LTE
Sbjct: 4   SLNLADIRSFVLIAQLGSFTKAALALDVSRSHVSRQISNLESQMKVTLLIRTTRTLKLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G   ++      + +E   +   +   K  G++RI      LG++++     +F+  YP
Sbjct: 64  AGKLFYQQCEVALNGIEQAVLVAVDDVEKVQGEIRINCVGGYLGEDVIGQIACDFMKQYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + Q+ L   +  +D+  +  D A R+ + +  S  I RKL+TI M   A+P YLK    P
Sbjct: 124 ETQVHLDFSSHRVDLLEEDFDIAFRMGQ-LDDSGFIARKLMTIEMSTLASPEYLKAKGIP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
              ++L+ H  +T        ++ + +   VD    E  I   LQ  +   +++  +   
Sbjct: 183 SQPKDLNAHQCLT------GSVKRWGYKHKVDNRDVEVAIKGHLQCKNGRVLVKGALNHQ 236

Query: 240 GIALLPD-YIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  +P  Y V+  D   LV + ED   PS      Y        +L+ F +F+    ++
Sbjct: 237 GIIRVPKVYCVEAIDEGKLVEVFEDWHIPSVAFSAIYHRDRYQPKRLRVFIDFVTAHFQN 296


>gi|209884222|ref|YP_002288079.1| transcriptional regulatory protein, LysR family [Oligotropha
           carboxidovorans OM5]
 gi|209872418|gb|ACI92214.1| transcriptional regulatory protein, LysR family [Oligotropha
           carboxidovorans OM5]
          Length = 313

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ + +F  V    SF  AA +L  S++++S+ +S LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEAMAIFAKVVELRSFASAARELKFSKATVSKAVSRLEERLGARLFNRSSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +++    E  + E    +  P G +R+A  +  GQ ++   L EFL  YPD+ 
Sbjct: 66  RALSVRAAQLLADAEAVENEALSQAAAPRGVVRLAVPMTFGQRVIAPLLPEFLAQYPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D  +R+ + +  SSL+ R+L  +  +  AAP YLK    P   
Sbjct: 126 IDLHLSDAMVDLIGEGFDIGVRIAR-LPDSSLVARRLCPMPAYTVAAPSYLKKYGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H    F        + +++       +       L+VN+  +++   + G GIA 
Sbjct: 185 MHLAQHRC--FSYAYRTTPDVWHYANAAGEEVSVRPSGPLRVNNGEAVIPALLAGYGIAD 242

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPD+I+ +      +  +++        V+   P       +++A   F+
Sbjct: 243 LPDFIIGEAIAKKQVEVVLKGWKQAEGAVHLVMPPGGPRPARVEALIEFL 292


>gi|153010253|ref|YP_001371467.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562141|gb|ABS15638.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 301

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 148/295 (50%), Gaps = 8/295 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V  +GSF+ AA  L ++ S+IS+ IS +E  +G++L  R +R L+LT +G   
Sbjct: 7   EMQVFLRVVETGSFSEAARLLRMNPSTISKLISRIEARLGVRLLERSSRRLSLTTEGQIY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +    E  + EL + S    G +R+  ++ LG   L+  L EFL  YP+I I L
Sbjct: 67  YERSQGLLRDFEEVERELSQGSASTGGTVRVNASVALGTLALEPLLPEFLSAYPNIVIDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+ +D  D A R+   + +SS++ RKL T      AAP YL+ C  PL+I +L
Sbjct: 127 SLSDELVDLYLDRTDVAFRIG-TLPNSSMMARKLGTARRKIVAAPAYLERCGMPLTIDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN I F       +     L    R +       L  N+  ++ +  V G G+A + D
Sbjct: 186 IDHNCIGFNFRRAAPVWP---LKESGRIVDRAVYGSLLANNGETVRRMAVAGLGLARIGD 242

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           Y  +++     LV ++ + +      V+  +    +   +++ F +F+  + + +
Sbjct: 243 YHARNDLASGALVEVLAEAVENDIEEVHAVFLGGARLPQRVRVFLDFVVPRLQAY 297


>gi|90411757|ref|ZP_01219766.1| Hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90327319|gb|EAS43683.1| Hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 288

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 128/289 (44%), Gaps = 9/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V + GSF+ A     ++ + I + I  LE  +G KL  R  R  +LTE G   +
Sbjct: 1   MQAFVSVVQHGSFSGATADCSVTPTMIGKHIKFLEVHLGTKLLNRTTRKQSLTEAGQIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +  LQ    KP G +RI + +  G  +L   + +FL  YP+I I   
Sbjct: 61  LECKRILDDIAEAENSLQTLENKPKGTVRINSPVTFGNIVLAPIVADFLQDYPEINIDFT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN  ID   D  D  IR+ + + +SSLI R++    M   A+ +YL  C  P S+ EL 
Sbjct: 121 LDNSLIDPLHDPFDLVIRIGE-LANSSLIAREIARYEMVFCASANYLSECGTPTSLDELL 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + F           N    +D    + + + L  NS  ++    + G+GI L P  
Sbjct: 180 RHQCLGFSYGDVNA----NLALRLDTLAFDKQHTRLISNSGQALKVAALKGAGILLQPRL 235

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ D   +  LV I+         V+  Y +      K +AF +F+   
Sbjct: 236 LLNDELSSGQLVEILSSDTPKPMPVHLLY-KHKALPLKTRAFVDFLLAA 283


>gi|109897454|ref|YP_660709.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109699735|gb|ABG39655.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 298

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 124/293 (42%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R F  VAR  SFT  A+QL +S    S+ I  LE +    LF+R  R +TLTE
Sbjct: 1   MDTLEGMRTFIAVARQKSFTSGAKQLGISTKLASKYIGQLEKKHDALLFHRTTRSVTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  +  +Q      SG +R+      G   L   L  FL  +PD
Sbjct: 61  TGRAYFERCVPLLEQFDELEDVIQHRQSALSGTIRLTAPTAFGSTKLVDALAPFLKQHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L ++ + I  +  D AIR    +Q S+LI +KL+ + +  +A+P YL     P 
Sbjct: 121 ISVELSLSDQRVAIIDEGVDVAIRFGD-LQDSTLIAKKLMNMRVVVFASPEYLAQKGAPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
               L  H+ +    L    ++  NW    +       +      NS  ++ Q    G G
Sbjct: 180 HPNALATHHCL----LQKSQVDPLNWKFKENGLTFNVNVHGVFASNSPRAVTQMAAQGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I + P Y+ +      +L  + E+      T+   Y        +++A  + +
Sbjct: 236 IGMGPIYVTEPYVKEGSLQILFEEFEANQLTLSAVYASNRHLPARIRALLDHL 288


>gi|258621809|ref|ZP_05716840.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258586040|gb|EEW10758.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 326

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 144/293 (49%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   D L +F +V  +GS+T  +++  +  ++I+R+I  LE  + ++L  RHAR LTLTE
Sbjct: 35  TMKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTE 94

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + ++  S +  +L +   E+ +     SG++RI+   +L + ++      F+  YPD
Sbjct: 95  AGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPD 154

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L++ N+  D+     D   R+  P + SSLI RK+  +     A+P YL N  +P 
Sbjct: 155 IHIELMMSNQADDLDPTEWDVIFRVG-PQRDSSLIARKIGEVKDILVASPTYLANHPQPT 213

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H L+         +  +    +    +        Q ++   +   C  G GI
Sbjct: 214 HAEELHQHQLL-----KGYPLLKWQLTNSQGETVVNTDRGRFQASALNVVRSACSEGLGI 268

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L+PD +++   D+ +LV+++ D  +    +Y  Y        K++ F +F+ 
Sbjct: 269 TLMPDVMLREYLDDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 321


>gi|187928411|ref|YP_001898898.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725301|gb|ACD26466.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 300

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 126/292 (43%), Gaps = 10/292 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS + AAE L +S++ ++R ++ +E   G +L +R  R + LT  G     
Sbjct: 8   EVFVAIVEHGSLSAAAEGLDMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTPAGEATLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++        +     +  P G LRIA    L Q  L   +  +L  YP   + L++
Sbjct: 68  RCRQMLEIASQMAVSEGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQTAVDLVV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           DN+ I++  +  D A+R+   +   +LI R L        AAP YL     P  +Q+L  
Sbjct: 128 DNRTINLVEERIDLAVRITNDL-DPNLIARPLGMCESVVVAAPSYLAAHGTPRRVQDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K +  F   A    P   P    L  N  + ++     G+GIAL P + 
Sbjct: 187 HNCLTYS-YFGKSLWKFT-EAKTGAPTDVPVGGNLSANESMVLLAAAREGAGIALQPVFA 244

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 +  LVR++ D +  +  ++  Y    +    L+A  +F+     DW
Sbjct: 245 AAPLIASGQLVRLLPDYVPQALGIHGVYSSRRQMPSALRAMLDFLV----DW 292


>gi|27377795|ref|NP_769324.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27350940|dbj|BAC47949.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 307

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 8/294 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF   A  GS + AAE L +S ++ SR +S LE  + ++L  R+ R L LTE G +L
Sbjct: 6   QLEVFAKTAELGSLSKAAEALRMSNAAASRHLSALEERLAVRLIERNTRRLWLTEAGQEL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              +S V  +L   +  + + ++ P G LR+ +++      L   L  F   YP + +Q+
Sbjct: 66  LERSSRVLSELAEAEDIVSDRALSPQGMLRVTSSLSFAVIYLAPMLPAFRARYPKLNMQI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              N+  D      D AIR R+    S++I R++  +     AAP YL +  E     +L
Sbjct: 126 TTANRYPDFIEAGIDVAIRTREQEPDSNIIVRRIGQMRRVLAAAPSYLASAGELEQPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +HN++ +        + ++            RI+  L  N    I    + G GI + P
Sbjct: 186 ARHNMLVYN----LANDPYSLRLRKGNGAQTVRITPTLDSNDGQVIRGAALAGLGILIQP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            YIV+ +     LV ++ D   P  T+   Y        K++AF +F+    R+
Sbjct: 242 LYIVQSDIAAGRLVPVLLDWELPLLTMNIAYQNRAGLPAKIRAFSDFLVTHIRE 295


>gi|254185358|ref|ZP_04891946.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184209593|gb|EDU06636.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 303

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 12/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F VVA +G F+ AA QL  + SS++R +  LE  +G+ L  R  R +TLT+ G+  
Sbjct: 6   ALQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L      + ++  +P G LR++  +   + +L  +L  FL  YP + + L
Sbjct: 66  LEQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +  +D++ D  D A+R+ +P +   L+ R L        A+  YL     P +  +L
Sbjct: 126 AVSDAYLDLATDRIDVAVRIGEPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPAAPGDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  + F    P      +W  + D    +  +   L  NS   + +  + G G+AL+P
Sbjct: 186 AAHRCLRF----PYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALVP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLK 293
            ++V D+     L+ + E            VY  Y    +++ K++ F  F+  +
Sbjct: 242 MWLVHDDIVAGRLLPLFESWCVTPPGGDARVYAAYLPNRRHSRKVQTFIAFLAQR 296


>gi|299137605|ref|ZP_07030786.1| transcriptional regulator, LysR family [Acidobacterium sp.
           MP5ACTX8]
 gi|298600246|gb|EFI56403.1| transcriptional regulator, LysR family [Acidobacterium sp.
           MP5ACTX8]
          Length = 306

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 133/297 (44%), Gaps = 10/297 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  D      +     V  SGSF  AA  L ++QS++SR I+ LE  +GI+LF+R  R +
Sbjct: 1   MEIDARILGGIATLSAVVESGSFVRAANTLGVTQSAVSRAIAKLEVRIGIRLFHRTTRTV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT +G + +   + +   ++        +     G LR+       + L+   + +FL 
Sbjct: 61  KLTAEGKQFYEEIAPLLDGIKNAVTLASGTGASVKGHLRVNIDPLFSRLLIAPQIGKFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP++ ++L+  +   D+  +  D  IR   P   SSL+ RKL+   +   AAP Y+   
Sbjct: 121 RYPELSLELVTRSLLGDLVSEGFDVGIRFGDPAP-SSLVIRKLLDTRILTVAAPGYINKF 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCV 236
             P    +L  HN + F +      + + W     R +   +  S L +    +++  C+
Sbjct: 180 GRPSKPTDLSHHNCLQFRN--SATGQPYEWEFRRGRKVVPVKTDSRLMLTDAGTLLATCL 237

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GIA + +  ++    +  L+ +  D    +F +Y  YP       KL+ F +F+
Sbjct: 238 AGVGIAQVMNLEIQPLLHSGKLIDLFPDWPDETFPLYMLYPSRTLPPAKLRVFIDFV 294


>gi|167570164|ref|ZP_02363038.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 301

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 132/295 (44%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE  +G++L  R  R  TLTE+G
Sbjct: 5   DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTREQTLTEEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H    ++  ++E  +  +++      G LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVKILAEIEQAETLMRDKRGTVGGALRITAPGELGRLRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDIDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAERGMPAHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P+     +    N   +   + + G+GIAL
Sbjct: 184 ADLCAHRCIVMGEQPR-----VEWRFDGPEPVAVEVSAAFLTNDGGAARTFALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V  +     L R++ +  + +  ++  YP       +++ F +++  + R
Sbjct: 239 KSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGAELR 293


>gi|153801959|ref|ZP_01956545.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|124122534|gb|EAY41277.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
          Length = 301

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P
Sbjct: 125 DVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPAYFTQCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  +T                   + +  P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLADHRCLT-----GSVKRWSYQHKETKQALDVPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|194364608|ref|YP_002027218.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347412|gb|ACF50535.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 302

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 5/291 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR    +  +GSFT AAE+L  + S++SRQ+  LE  + ++L  R++R L+LTE G 
Sbjct: 4   FAALRALRAIVDAGSFTAAAERLGTTHSAMSRQLRQLEEHLQVRLLDRNSRRLSLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  + +  +L+      +    +PSG +RI+    +    L   L  FL  YP + +
Sbjct: 64  DYYREAAALLDRLQEADDRARAGQAQPSGTVRISVPQVVASQELPHWLPSFLQRYPQVTL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  D++ +D+     D A+R+   +  S L+ R+L +      AAP YL     P    
Sbjct: 124 DLSADDQLVDVVGGGFDLALRIAASLPDSQLVARELASCPRILVAAPAYLARHGLPRQAS 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+ F       M  +                 L+V++  ++    + G GI+L 
Sbjct: 184 DLAQHTLLGFSPT--PSMLPWQLQGPRGATASIEAGQRLRVDATPALYAAALAGMGISLF 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               V+++     L+R++          +  YP A     K++A    +  
Sbjct: 242 TALTVQEDLRAGRLIRVLPAWHAGQRHYFALYPHARALAPKVRALVEHLAA 292


>gi|15596073|ref|NP_249567.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|254239229|ref|ZP_04932552.1| hypothetical protein PACG_05420 [Pseudomonas aeruginosa C3719]
 gi|9946775|gb|AAG04265.1|AE004522_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126171160|gb|EAZ56671.1| hypothetical protein PACG_05420 [Pseudomonas aeruginosa C3719]
          Length = 314

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 135/295 (45%), Gaps = 5/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   ++ +R F  VA +GSFT AA++L L+ + +SR ++ LE  +  +L +R  R + LT
Sbjct: 1   MDILFN-MRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   +E  + E  ++  +PSG L++     +GQ+ L   + ++   YP
Sbjct: 60  EAGQRYLMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++   L L N+  DI  +  D ++ +   +  S  + + +   +    A+P Y+     P
Sbjct: 120 EVGFDLTLANRITDILDEGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  +   + +   ++ + +     + +     +  QVN+  ++ +  V G G
Sbjct: 180 KLPAELSAHRCLRLVNSVM-SLDRWLFDGPDGQELACINQTHFQVNTADAMTEAVVSGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP Y   +   + +LVR++         VY  YP       K++ +  F+  
Sbjct: 239 IGALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFLRE 293


>gi|209550676|ref|YP_002282593.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536432|gb|ACI56367.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 302

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 10/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +RVF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T 
Sbjct: 1   MDKFDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +E  +     +  +P G LR+     L ++ L  +L  FL  YP+
Sbjct: 61  DGEAYYQRCLSILADIEDAEGAFAGA--RPKGLLRVDVHGTLARHFLLPSLPSFLQTYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+  +   ++ +D+  +  DC +R       S +I R++  +     A+P Y+     P 
Sbjct: 119 IEFYMSEGDRLVDLVREGIDCVLR-GGTTGDSDMIIRRVAMLDEITLASPDYVAAHGLPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
               L  H +I F               TVD  + E  I + + VN+  S +    +G G
Sbjct: 178 HPDRLAGHRMIGFRS--SGTGSQLPLEFTVDGVVREISIPATVAVNAAESYISAARMGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           I  +P Y  + +     L+ +++D       V   YP   + + +++ F +++ 
Sbjct: 236 IIQIPRYHAEKDLAEGTLIHVLKDFPPTPTPVSVLYPRNRQLSPRVRVFIDWLV 289


>gi|163749428|ref|ZP_02156676.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161330837|gb|EDQ01764.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 313

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+GSF+ AA +L +S+S +S Q++ LE ++G++L  R  R L+LTE G 
Sbjct: 5   LEPIAIFTHVARAGSFSSAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    E+    E     +   +    G L++  +   G   +   L EF+  +P++++
Sbjct: 65  LLYAQGEELLRGAEQAIASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMNTHPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L +  +D+  +  D  + + + +    ++ R L+       A+P Y++   +    +
Sbjct: 125 QISLLDHKVDVVSEGLDLLLTMSEQLP-LGMVARPLMKCQFLLAASPSYIEKNGQLDRPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + +     +  E   W         E  +S   +V++  ++    V G GI  
Sbjct: 184 QLVDHNCLVYH---GEWHEHSVWQFKQGEDYCEIGVSGNFRVDNAPALKSAAVSGLGIVY 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
           L  Y+++   +   LV +++D     +  +   YP       K+ AF +F+
Sbjct: 241 LASYLLEGEVEKGTLVPLLQDWQLTHYLPLQAVYPRRKHLAPKVSAFIDFL 291


>gi|146307034|ref|YP_001187499.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575235|gb|ABP84767.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 290

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 130/298 (43%), Gaps = 13/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  V ++ SF  AAE L +  S++SR+I+ LE  +G++L  R  R + LT
Sbjct: 1   MKL-LNDMALFVEVIKANSFRGAAEALGIPNSTVSRRIAELERRIGLRLLNRTTRRIELT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +  +      E+ E    PSG +R++   D G   L   L EF   YP
Sbjct: 60  EGGRLYFERCRRIVDEARLAHEEISELVDNPSGLIRLSMPTDFGVVYLAPLLAEFAERYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+  L L  K +D+  +  D  IR+   +  S LI R L T+    +A+P YL     P
Sbjct: 120 QIRFDLDLTPKRLDLIREPVDLVIRIG-TLPDSQLIARPLGTLRRSLFASPAYLARYGMP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S   L +H  +   D  P  + D        + I         +N+   + +  +LG G
Sbjct: 179 ASPAALLQHQCLRMLD-APWVLHD------TQQKISLAVQGRFLLNNIGMLRRLALLGQG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A+L D ++ ++     L R++ D       VY    E      K++   +F+  + R
Sbjct: 232 VAMLVDEMIGEDLAQGRLHRVLPDWKAEDLPVYAIT-ETRLVPAKVRVLIDFLTDQLR 288


>gi|90423721|ref|YP_532091.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105735|gb|ABD87772.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 298

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  VA    F  AA +L LS S+++R ++ LE  VG +L  R  R +TLT+
Sbjct: 1   MDRLDAMTAFVAVADLQGFAPAACKLGLSPSAVTRLVAALEERVGARLLQRTTRSVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +   +E  +   Q    +P+G+L ++  +  G+  +   +  +L  YP+
Sbjct: 61  VGARYLERARRILADVEEAEGSAQAERTQPAGRLVVSAPVGFGRLHVTPLISAWLKRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +L L ++ +++  D  DCAIR+ + +  SSL+ R +  +     A+P YL     P 
Sbjct: 121 VAGELRLTDRVVNLVEDGVDCAIRIGQ-LPDSSLVARAVGDMRRIVVASPDYLAARGVPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L KH+ I FG L       F       R I          N   + + +   G G+
Sbjct: 180 TPAALAKHDTIQFGALAAAPDWRFQ---DAGREIRVACTPRFTTNVADAAIWHAEQGGGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +  Y   +      L  ++     P   ++  YP +   + K+++F + +   A DW+
Sbjct: 237 TRVLAYQAAEGLAAGRLKVVLRKFEPPPLPIHIVYPTSRLLSAKVRSFIDLLIETA-DWR 295

Query: 299 F 299
           F
Sbjct: 296 F 296


>gi|90426052|ref|YP_534422.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108066|gb|ABD90103.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 315

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 134/295 (45%), Gaps = 9/295 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F      GSF+ AA +L +  S+ISR I+ LE+++G  L  R  R L LTE G+  
Sbjct: 6   AMRAFIRTVELGSFSLAATELDVKVSTISRHITALESDLGAALLNRSTRRLHLTEAGTLF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +++   +E  +      +  P G LRI+     G+  +  ++K+F+  YP+I+I  
Sbjct: 66  FDRATQILLAVEEARAATASLNESPRGVLRISMPTAFGRLHVMPHIKDFVAEYPEIRIAA 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+     D A+R+   +  SSL+ R+L +      A+P +L+ C      +++
Sbjct: 126 TLTDATVDLIETGDDVAVRIGS-LTDSSLVARRLASHRRILVASPGFLRQCEPISRPRDV 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +   + F      C        +   P+       ++ N   ++    + G GIALLP 
Sbjct: 185 ARQQCLIFTLQSGDCWYARRSDDSSTEPLQIAVSGNMRANDSEALQGAALAGLGIALLPS 244

Query: 247 YIVKDN---PNLVRIMEDV-----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++V D+     LV  +          P   ++  YP     + K+++F +F+  +
Sbjct: 245 WLVGDDLRAGRLVVPLAGWDWFAARGPEPAIWGVYPPKKIVSPKVRSFIDFLARR 299


>gi|167572228|ref|ZP_02365102.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 323

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 135/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTLSQTMLSRLLPEFLH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++Q+ + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L+ 
Sbjct: 121 RYPEVRVQIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPGLLQQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P+   +L + +  T           FN +A             L     ++I +  +
Sbjct: 181 NAPPIVPADLSRFD--TLDTPSGDGRHVFNLIAPDGTRHAHEHEPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P+  +Y  +         ++AF +++  K
Sbjct: 239 DGVGIAALPESMYGNALRAGQLSPVMPGWTLPAPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|78063910|ref|YP_373818.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971795|gb|ABB13174.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 314

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 138/296 (46%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +  F  V  +GSF+ AA +L  ++S +S +I  LE  +   L  R  R L LT
Sbjct: 1   MMNKFTDMSTFVAVVEAGSFSEAARRLGTTKSIVSTRIQKLERRLACALLKR-GRSLQLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +      ++  +LE  + E+ E+    SG L+++  +      L   L  F  +YP
Sbjct: 60  DPGQRFFEQARQLLQELERIEGEVNEAGSSLSGNLKLSVPVTFVARYLAPLLSRFADMYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +  D++  ++   + D AIRL  P+  SSL+ R +        A+P YL+    P
Sbjct: 120 ALCLDVEADDRLSNLQDGHFDAAIRLG-PLADSSLVARPVTVNRHLICASPGYLERRGMP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +   +L +H+ + + +  P  M  ++     ++     R+  ++ +S   ++   + G G
Sbjct: 179 VHPDDLPQHDGLLYLNREPHGM--WSLPLEYEKQSFRVRV-RMRTDSGFQLLAGAIAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A+LP ++  +   +  LV ++ +       V   Y + ++ + K++A   F+  +
Sbjct: 236 LAILPTFLASEALVSGELVSVLPEYAPSGGQVNVVYRKTVRTSPKIQALVRFLEEE 291


>gi|261342694|ref|ZP_05970552.1| HTH-type transcriptional activator AaeR [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315346|gb|EFC54284.1| HTH-type transcriptional activator AaeR [Enterobacter cancerogenus
           ATCC 35316]
          Length = 302

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 132/288 (45%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVELGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L     + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAAMTADMLKEYPGLTVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L ++ M   A+  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGSMPMVVCASKSYLAQYGVPEKPADLT 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
            H+ + +     +   +F  +A          +     N  ++I ++ V G+GIA +P  
Sbjct: 180 NHSWLEYSV---RPDNEFELIAPEGLSTKLLPVGRFVTNDPMTISRWLVAGAGIAYVPLM 236

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++ +  +  L  +     +    VY  Y E  K   K++   N++  
Sbjct: 237 WVINEINSGELEILFPRYQSDPRPVYALYTEKDKLPLKVQVCINYLTE 284


>gi|254284680|ref|ZP_04959647.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|150425465|gb|EDN17241.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
          Length = 301

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 136/292 (46%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGEIFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P
Sbjct: 125 DVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLAEHRCLT-GSVKRWSYQHKETKQTLD----VPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|170721871|ref|YP_001749559.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759874|gb|ACA73190.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 303

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F   A++GSFT AA  L L++S++ + I+ LE  + ++L  R  R L+LT++G 
Sbjct: 6   FGDITAFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGL 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   L+  +  + +   KP+G LR+   + LGQ  +   L  +L  +P+++ 
Sbjct: 66  VAYERWRQILDDLDEVESTMAQRRGKPTGTLRLTAPLSLGQRHVLPVLDAYLKQWPELRA 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  D A+R+  P + S L+ R +        A+P YL+    P    
Sbjct: 126 DIRFTDRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPEYLRQHGVPQVPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ I F          F+   T +          L ++S  +++     G G+  L
Sbjct: 186 DLYGHDKIAFLIGEKSMAWRFH---TPEGLHLCEEPGRLNIDSSEAMLDGARAGFGLIHL 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P YI  ++     LV ++     P+  +   YP     + +++ F + +  
Sbjct: 243 PTYITGEDLRAGTLVEVLHAYRPPADPIRVVYPSKRHLSPRVRGFIDLLVA 293


>gi|298489047|ref|ZP_07007070.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156545|gb|EFH97642.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 304

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D LR+F +VA+  +F+  AEQ+ L+ SSIS  +S LE ++G +LF R  R + LT++G
Sbjct: 7   SLDDLRIFNLVAQLKNFSRVAEQIDLAPSSISMAVSRLEAQLGARLFQRTTRKMVLTDEG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L   +  +    +      ++     +G+LR+   + +   L+   L EF   +PDIQ
Sbjct: 67  LTLLSRSERLLEDFDEVTSLFRQPGNHLTGRLRVDLPLGMAAGLVMQRLPEFHARHPDIQ 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +D+  D  DC +R+       SL+ R L  + +   A+P Y++    P + 
Sbjct: 127 LDIFSTDRRVDVIADGFDCVVRVGAA-TDVSLVCRPLGALPLVNVASPAYIEAYGMPATP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H L+ +          F ++  TV R +  P    + VN+  +    C  G GI+
Sbjct: 186 ADLALHYLVNYAPNPSDSAAKFEYMDGTVARTVTVPHK--VTVNNSPACGAACRAGFGIS 243

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP   V     +  LV+++ D +  +  +   YP       +++ F +++  
Sbjct: 244 QLPLLGVASYLASGLLVKVLPDYLPATMPINLLYPHRRNVPQRVRLFGDWLVE 296


>gi|21243565|ref|NP_643147.1| LysR family transcriptional regulator [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109133|gb|AAM37683.1| transcriptional regulator lysR family [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 304

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 131/294 (44%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  V   GS T  A  L LS +  S+++  LE E+G++L +R  R L  T +G 
Sbjct: 4   LGDIALFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTAEGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +   L+    +L+ES+    G LR+  +   G+  +   L EF   +P ++I
Sbjct: 64  RLAERGRVLVEDLDALAEDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPRLRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L +  +D+     D AIR+  P++ S L+ R++        A+P YL+    P +  
Sbjct: 124 SAHLSDDLVDLVKQGFDLAIRIG-PLEDSGLVARRIADNRRTLAASPAYLQRHGTPRTPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  +    +     +D   L T D  +   R+ S  + N    +    V G GIA+
Sbjct: 183 ELAQHAGVLL--MGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAV 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + + D   +  LV +M D   P+  +    P       +++AF +F+  + 
Sbjct: 241 HSYWHIADELRSGRLVHVMPDYPPPASQISAVMPARQLQPPRVRAFVDFLQERL 294


>gi|251788162|ref|YP_003002883.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247536783|gb|ACT05404.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 298

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 10/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA Q  +++SS+S +IS LE  +G++LF R  R L LT  G 
Sbjct: 5   LQDMALFALVAECGSFTEAARQAGMAKSSLSLRISQLEQALGLRLFNRTTRKLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E  ++ +      PSG+LRI     LG  LL     EF L +P + +
Sbjct: 65  RYLVHCREMRQASERAEMAMLHLRNNPSGRLRITAPAGLGATLLARLTAEFQLRFPAVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +++ ++ ID+  +  D A+R  KP Q SSLI R L  +  +  A+  YL      +  +
Sbjct: 125 DIVVADRVIDLVEEGFDVALRTGKP-QDSSLIGRSLGQVPHYLVASTAYLAGFAPIMHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  IT      +   ++ +    +  +     S +  ++ L      +   GI LL
Sbjct: 184 DLQSHRCITH-----RAWPEWGFHRETEYFLWRLPQSHI-TDNLLYARACALADGGITLL 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P ++ +   D   LV ++ +    +  +Y  YP    N+  L  F +F
Sbjct: 238 PTFLCREPLDRGELVCLLPEWQADTNDLYLIYPGRKLNSPALNCFIDF 285


>gi|242238068|ref|YP_002986249.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242130125|gb|ACS84427.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 320

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 128/296 (43%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++ VF  V  +GSF+ AA QL  + S+ISR I+ LE  +  +L  R  R L L++ G 
Sbjct: 17  LEEMAVFAKVVETGSFSEAARQLGATPSAISRSINRLEKALNTRLLQRTTRKLRLSDSGQ 76

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +++    + ++           +  P+G +R++    +G  L+  ++ +FL  YP + I
Sbjct: 77  VIYQHCQNMVNEALAAISTSGVFNDAPAGIVRLSVPKAVGHFLIHPHIPDFLEQYPKVDI 136

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L+++ +D+  D  D AIR+        L+ RKL TI     A P YL+    P    
Sbjct: 137 VMRLEDRYMDLIDDQIDVAIRITNQ-PPPGLMGRKLTTIDHVLCATPAYLEKQGIPQHPH 195

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I  G+        F+     ++ +          N     +       GI  L
Sbjct: 196 DLKQHCCIYLGETPGDARWKFS---RENKTVSVAVHGRYAANHTGVRLDAIRRHIGIGSL 252

Query: 245 PDYIVK---DNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +  +   +  ++V+++ +       S  ++  YP       ++ A   F+  + 
Sbjct: 253 PWFTAREALEQGDIVQVLPEWNFKTDYSGEIWLLYPPTRHLPPRISALIGFLSEQL 308


>gi|189350105|ref|YP_001945733.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189334127|dbj|BAG43197.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 304

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 132/282 (46%), Gaps = 5/282 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA +G FT AAE+L+L+ S++S+ ++ LE  +G+ LF R  R L LT+ G   +   
Sbjct: 15  FVCVADAGGFTAAAERLNLTNSAVSKSVARLERRLGVVLFERTTRKLVLTDAGRAFYETC 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  +L   +  L     +P G +RIA     G+  +   L  F   YPD++  L+  +
Sbjct: 75  TRILAELAEAEAVLAAQQREPVGTVRIALPASFGRLCVVPVLVRFSEQYPDVRPHLLFTD 134

Query: 131 KDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D++ +  D A+R+  P     SL +R L    +   AAP YL+    P ++ +L +H
Sbjct: 135 RFVDLAEEGIDLAVRIGGPPGLPPSLGRRFLGRERLIFCAAPAYLEKNGIPQTVDDLQEH 194

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I +G         +++ A   +         +      + + +   G G+A L  ++V
Sbjct: 195 ACIVYG-RPDGAQSLWSYAAADGQVEQRVVRPRIVAGDAEAQLAFVRAGLGVAQLATWLV 253

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +D+     LV I+++  T    +   +P A + T K+     
Sbjct: 254 RDDLKAGRLVAILDEAATDGLPLSLIWPVARQLTPKIHVLVQ 295


>gi|121603924|ref|YP_981253.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120592893|gb|ABM36332.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 311

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 130/287 (45%), Gaps = 6/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F ++AR GSF+  A +L ++  ++S+++S +E  + ++L  R  R ++LT +G   
Sbjct: 10  EMAFFSMLARLGSFSATARELGITTPAVSKRLSQMEARLRVQLLNRTTRRISLTPEGETY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   ++  +  +  ++  P G LR+  T+  G++ +   + EF+ L+  +Q+QL
Sbjct: 70  LAHARRILADIDDMEQMVSGAASAPKGLLRVNATLGFGRSHIAPLISEFIKLHAQVQVQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  +R  + +  + ++ R L        A P YL +   P    +L
Sbjct: 130 QLSVDPPPLAEDAFDVCVRFGE-LPDTRVLARYLAPNRRLLCATPAYLASHGTPRVPNDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN I               L+   R         L  N     + + + G GI +  +
Sbjct: 189 AHHNCIGIRQGGEAYGTWR--LSQGKRTETVKVRGNLSTNDGEIAVNWALDGHGILMRAE 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +     +  L++++E+   P   ++  YP+  + + +++AF +F+
Sbjct: 247 WDIAKYLRSGRLLQVLENYRLPPADIHAVYPQRHQTSVRVRAFVDFL 293


>gi|86358885|ref|YP_470777.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282987|gb|ABC92050.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 341

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 142/300 (47%), Gaps = 12/300 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  + ++L+   +F   A +G F+ AAE+LHL++S++S+ I+ LE  +G++LF R  R  
Sbjct: 39  METNMEQLKGISIFVQTAEAGGFSAAAERLHLTRSAVSKTIARLEQRLGVRLFNRTTRSQ 98

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G   +        ++   + +L+       G+LR++  +  G++     L   L 
Sbjct: 99  SLTEEGRFFYERCLRAIEEIRIGEAQLESGRRAVRGRLRVSMPVLFGRHCAAPILTRLLD 158

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+++     ++ +D+  D  D A+R      +  L+ R +    M   A+P YL+  
Sbjct: 159 DHPDLELDFSFSDRVVDLLEDGFDLAVRNGPLKDNPDLMARAIARQSMTVCASPTYLEKY 218

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYC 235
             P +  EL  H  I +     +   D  W+    V  P      S L+++   SI    
Sbjct: 219 GVPQTFDELAHHQGIIY----RRGDNDRAWIFPSAVGPPREVLPKSRLRLDDLASIADAA 274

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V G G+A L  ++V+D   +  LVR++ DV +  F  Y  +P +     K++   + +  
Sbjct: 275 VEGRGLAWLTCWLVRDRVLSGELVRVLTDVPSNIFEAYAVWPRSPVMLPKVRLAIDILAA 334


>gi|298486830|ref|ZP_07004886.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158697|gb|EFH99761.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 300

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 128/297 (43%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  +ISR+++ LE ++G++LF+R  R ++LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         + H  ET +  L+  +   SG LR+      GQ ++   L   +   P +
Sbjct: 61  GEVFLPHAKTMLHASETARATLKGDTGTASGVLRVTAPSVFGQTVIMPLLPVLMQENPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI     D AIR+   I+ S+L+ R L        A+P YL    +P  
Sbjct: 121 SIDLTLSDSIVDIVGMGIDVAIRIA-TIRDSALVARSLAPNPRVVCASPDYLARHGKPAL 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++EL  H  I    +                PI          NS  ++   C  G G+A
Sbjct: 180 LEELRHHPCIALHAMPWWS------FTKNGEPITIRAQGPFSANSVEAVRTACKQGMGLA 233

Query: 243 LLPDYIVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +L  + V+      +L ++  ED +    +V    P   +   +++ F + +    +
Sbjct: 234 MLTYWDVRQEINEGSLQQVDFEDAMPEQLSVTAVLPTRQRVPHRVRLFIDRLEAALK 290


>gi|71908405|ref|YP_285992.1| regulatory protein, LysR:LysR, substrate-binding [Dechloromonas
           aromatica RCB]
 gi|71848026|gb|AAZ47522.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 295

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D + +F  VA  GSF+  A+Q  +++S ++RQI+ LE  +G+KL  R  R LTLT 
Sbjct: 1   MDRLDAMHLFVRVAELGSFSAVAQQQGVARSVVTRQIAALEAHLGVKLMARSTRRLTLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        + + +E  +  + E  + P G +RI+  +  G   L   L +F   YP+
Sbjct: 61  GGTAYLEKCRVILNLVEAAETGVAEERLTPRGNIRISLPLSYGLKKLAPVLLDFSQRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + +   ++ +++  +  D +IR+ + ++S   + RK+ +  M   AAP YL     PL
Sbjct: 121 VVLDMDYSDRRVNLIEEGIDLSIRITRRLESGD-VARKIGSGRMLVVAAPDYLARHGRPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  H  + +       +  F     ++        S L  N+   + +    G GI
Sbjct: 180 HPAELVHHVCLGYTYAGSSQVWQFMVEGQLE---SFHVRSRLNANNGDVLTEAAAQGLGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              PD+IV        +  I+ D   P   +Y   P       +++   + +  + 
Sbjct: 237 TCQPDFIVDTFLAAGRVEEILADFPIPELGIYAMLPSNRHVPHRVRVLMDTLAARL 292


>gi|330503614|ref|YP_004380483.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328917900|gb|AEB58731.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 306

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 135/295 (45%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AA  LH+S++S+++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAAATLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  +S+ P G+LR+       + LL   L  F   YP+
Sbjct: 61  DGAAYYERVVRLLADVDDAETSLSSASLVPRGRLRVDVPSPFARMLLIPALPAFYARYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L + ++ +D+  +  DC +R    I   SLI R +  + +  YA P YL+    P 
Sbjct: 121 IQLTLGVSDRIVDVIGENVDCVVR-GGEIIDQSLIARHVGDLQLGIYATPSYLQGAGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
             +EL+     T G L  +  +   +         E      L V+   + +   + G G
Sbjct: 180 HPRELEATGHSTVGFLWSRTGKALPYAMRCGDECIEAHGRPRLIVDDGNAYLAAGLAGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  LP Y+ K +     LVR+ E+       +Y  +P     + KL+ F +++  
Sbjct: 240 MLWLPHYMAKPHLASGELVRLFENWQMTPMPMYLAFPPNRHVSAKLRVFIDWVVE 294


>gi|187927525|ref|YP_001898012.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|309779771|ref|ZP_07674527.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
 gi|187724415|gb|ACD25580.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|308921470|gb|EFP67111.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
          Length = 305

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 144/300 (48%), Gaps = 9/300 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L +F  V  +GSFT AA +L L +SS+SR I+ LE ++ ++L  R  R L LT+ 
Sbjct: 1   MDLNQLALFVRVVEAGSFTAAATRLDLPKSSVSRGIAALEQDLNVRLLQRTTRTLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++V S     +E       E    P GK+RI ++ D+G+ L+      F+ LYP+I
Sbjct: 61  GQSLYQVASHALEDIERATTCAGELQDLPRGKVRITSSEDVGRLLVAPVAARFMQLYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++L  +++D+  +  D A+R+ + +  SSL+ R L  + +  +A+P YL+    P +
Sbjct: 121 DLDVVLTPRNVDLVQEGFDLAVRVGR-LADSSLVARSLGVLRIGLFASPDYLQRRGAPDT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +Q L  H  + F        +    L   D        + L  +S + +      G+GI 
Sbjct: 180 VQGLADHCCLDFRGTGRGETQWR--LVGPDGLKTVAVRARLNADSLIYLETLIASGAGIG 237

Query: 243 LLPDY---IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP Y   + + N   P LVR++ D  T    +    P A     +++   + +    R 
Sbjct: 238 PLPLYASAVARANAPLPRLVRVLPDYATSGEPINLVTPSARFVPRRVRLLIDMLTESIRQ 297


>gi|319796367|ref|YP_004158007.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598830|gb|ADU39896.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 308

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   A SGSF+ AA +L L+ +++S+ ++ LE  +G++LF R  R LTLTE G 
Sbjct: 4   LNHLESFVQSAESGSFSAAARRLGLTPAAVSKNVARLEARLGVRLFQRSTRRLTLTEGGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L+     L +   +P+G L+++     G+  +   + +FL  YP I  
Sbjct: 64  RFLAQIGGPLATLQEAVAGLAKDDGQPAGTLKVSMGQAFGREHVLPMMGDFLARYPSILP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+  +  D AI     + S  ++ R+L  IH+ A A+P Y+     P    
Sbjct: 124 DWHFDNQQVDLVGEGFDAAIGGGIDL-SPGVVARELSRIHVVAVASPAYMAGRAPPAQPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIA 242
           +L   + +         +  +    +  +      PR   +  N   +I    +LG G+A
Sbjct: 183 DLAGFDALLRRSSPTGRLRSWTLQHSGGQQATVELPRPRAI-FNDPEAIAHAALLGLGVA 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +LP   V+    +  LVR++ +    +  V+  YP       K + F +F+ 
Sbjct: 242 MLPMPFVERGLRSGELVRLLPEWHFDAGVVWLYYPSKKLLPPKTRVFVDFVL 293


>gi|13474620|ref|NP_106189.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025374|dbj|BAB51975.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 314

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  ++VF    ++GS + AA Q+ LS + + + ++ LE  +G +L  R  R  +LT
Sbjct: 1   MDL-FRSMQVFVATVQAGSMSSAAAQVGLSPAMVGQHVAALEERLGTRLLNRTTRRQSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+       ++  ++     E +       G+LR+      G  +L   L+ +  L P
Sbjct: 60  DFGASYIEQCRDILDRVAIADREAEALQTGARGQLRVTAPTTFGAEVLVPALRRYRELAP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + + L ++++D+  +  D A R+   +  + LI R L    M   AAP YL     P
Sbjct: 120 EVTLDITLTDRNVDLVEEGFDIAFRIG-TLPDNHLIARSLAPYRMMICAAPDYLVRKGMP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H ++ F    P     +      D    EP  +   VNS  ++      G G
Sbjct: 179 EHPSELSSHEVVGF---TPAARSPWRMSKGGDVVEVEPAWTV-TVNSGQAVRTAARAGLG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + + P  ++  +     LV++  D       +   Y    + T +L++F +F   +
Sbjct: 235 VVMQPAILLSPDVQAGQLVQLFPDWHLRERPMSLLYHRDRRMTPRLRSFISFAAAE 290


>gi|121610128|ref|YP_997935.1| LysR family transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121554768|gb|ABM58917.1| transcriptional regulator, LysR family [Verminephrobacter eiseniae
           EF01-2]
          Length = 307

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 126/285 (44%), Gaps = 6/285 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +A +GS + AA +L ++  ++S+ ++ +E+ +G+ L  R  R ++LT +G       
Sbjct: 14  FSTLATAGSLSAAARELGITTPAVSKHLASMESRMGVTLVNRTTRRMSLTPEGEVYLEHA 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   ++  +  +  ++    G LR+  T   G++ +   + +F+  +P +++QL L  
Sbjct: 74  RRILSDIDGLEQLIHGATTSARGLLRVNATPGFGRSHIAPLVSKFIFGHPGVEVQLQLSV 133

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
               ++ D  D  IR   P   + +I R +        A+P Y+     P   ++L +HN
Sbjct: 134 NPPPLTEDSFDVCIRFGSP-PDARVIARHIAPNRRLLCASPVYIAKHGLPEVPRDLTRHN 192

Query: 191 LITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
            I    GD         +                L  N     + + + G GI +  ++ 
Sbjct: 193 CIGIRQGDEAYGVWRLTSGCGRFSTTEVVKTRGNLTTNDGEIAVNWALDGHGILMRAEWD 252

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++    +  LV+++    TP   ++  YP+  +N G+++AF  FI
Sbjct: 253 IERYLKSGRLVQVLPQCHTPDANIHAVYPKRHQNAGRVRAFVEFI 297


>gi|254198250|ref|ZP_04904672.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|169654991|gb|EDS87684.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
          Length = 301

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSAAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGEQPR-----VEWRFDEPHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W++
Sbjct: 239 KSIWDVGPDLAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWRW 298


>gi|260431080|ref|ZP_05785051.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414908|gb|EEX08167.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 301

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 136/304 (44%), Gaps = 10/304 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F + A   + + A  +L L+ +  S +++ LE E+G++L +R  R ++L+ +
Sbjct: 1   MDTEALRLFVMAADRLNISAAGRELGLAPAVASGRLARLEAELGVELLHRTTRKVSLSLE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++      E+  + +  +  L  S   P G LR A      Q  +   L +F   +PD+
Sbjct: 61  GAEFLPYAREILAQSDAARAVLGNSQSHPRGTLRFAAPSSFAQLHIMPLLADFHAGHPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L ++  D+     D A+R   P+  SSL  RKL        A+P YL     P +
Sbjct: 121 TLDLRLSDRQTDLIEGSFDLALR-SAPLADSSLKGRKLADDVRILCASPAYLAEHGTPEA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  I + +  P+ +          +P     +    ++   S  +  + G+GI+
Sbjct: 180 PDDLSRHRFIAWANADPRELVSSTGARFTLKPAAT--LCRAIIDDGTSQREATLAGAGIS 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRNFIFLKA---R 295
           +  ++ V        LVR++ +       V +  YP +   T K +AF +F+  +    +
Sbjct: 238 INSEWSVAHEIRRGRLVRVLPEWRLNDRAVLWLVYPRSNILTPKTRAFIDFLIERLGKRK 297

Query: 296 DWKF 299
            W+ 
Sbjct: 298 AWRM 301


>gi|167584508|ref|ZP_02376896.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 315

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD
Sbjct: 61  AGESYLRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHAQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A+P Y++    P 
Sbjct: 121 VSIELSLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVRQHGAPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +T         E    L              +Q N+  S+      G GI
Sbjct: 181 RPQDLGGHQCLTLSTPAFPTHEWL--LEGPGGVEQIHVTGPVQTNTAESLALAIRDGIGI 238

Query: 242 ALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +LP Y       +  LVR++ D I     VY  YP       K++ +   +  +  D
Sbjct: 239 GMLPVYSSIDALRDGTLVRVLPDHILQKMNVYALYPSRRFVDAKVRTWVELLRAQVPD 296


>gi|260427232|ref|ZP_05781211.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260421724|gb|EEX14975.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 298

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 129/299 (43%), Gaps = 10/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D LR F   A +GSFT AAE+L +S    S+ ++ LE  +G++L  R  R + +T
Sbjct: 1   MDM-IDGLRAFVATAETGSFTGAAERLGISNRLTSKYVAELERRLGVRLLQRTTRKVGVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L      +  +L+    E+ E     +G LR++  +  G+  ++  L  F   +P
Sbjct: 60  ASGEALLARAPALLDELDEMLAEVTEDGRGFTGTLRVSAPVTFGEKYVKDLLSRFAAPHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I L L +  +D++ D  D   R+ +P   SSL +RKL  I     A+P YL     P
Sbjct: 120 ELTIDLRLSDAYVDLAADGIDLGFRIGEPAL-SSLKRRKLGAIRSRLVASPDYLARHLAP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            + ++L  H  I   +          W    D      R+ +   VNS        V G 
Sbjct: 179 ATPEDLASHVCIVDTNRADPA----RWRFLRDGETTTVRVPTRFMVNSAQVARDLAVAGD 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+A  P +++ D+     LV ++    +P   +   + E      K +A  +F     R
Sbjct: 235 GVAYCPVFVLGDDIKAGRLVPLLPGYDSPPRPIAAVWLEGRTLPRKTRALIDFAVEDMR 293


>gi|221202040|ref|ZP_03575076.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221204829|ref|ZP_03577846.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175686|gb|EEE08116.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221178123|gb|EEE10534.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 304

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/282 (25%), Positives = 132/282 (46%), Gaps = 5/282 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA +G FT AAE+L+L+ S++S+ ++ LE  +G+ LF R  R L LT+ G   +   
Sbjct: 15  FVCVADAGGFTAAAERLNLTNSAVSKSVARLERRLGVVLFERTTRSLVLTDAGRAFYETC 74

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           + +  +L   +  L     +P G +RIA     G+  +   L  F   YPD++  L+  +
Sbjct: 75  TRILAELAEAEAVLAAQKREPVGTVRIALPASFGRLCVVPVLVRFSEQYPDVRPHLLFTD 134

Query: 131 KDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D++ +  D A+R+  P     SL +R L    +   AAP YL+    P +I +L +H
Sbjct: 135 RFVDLAEEGIDLAVRIGGPPGLPPSLGRRLLGRERLIFCAAPAYLEKNGIPQTIDDLQEH 194

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I +G         +++ A   +         +      + + +   G G+A L  ++V
Sbjct: 195 ACIVYG-RPDGAQSLWSYAAADGQVEQCVVRPRIVAGDAEAQLAFVRAGLGVAQLATWLV 253

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +D+     LV I+++  T    +   +P A + T K+     
Sbjct: 254 RDDLKAGRLVAILDEAATDGLPLSLIWPVARQLTPKIHVLVQ 295


>gi|331016585|gb|EGH96641.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 303

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 135/299 (45%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + +F  V RSG+F  AA QL +  +++SR+I  LE ++G +L  R  R L LT
Sbjct: 1   MIADLNDVALFVQVVRSGNFAQAARQLGMPSNTVSRRIQHLEVQLGTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +   +     L +   +L     +PSG++RIA   D         + +FL  YP
Sbjct: 61  QKGEHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+        A+P YL     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S++ L  H+ +      P     +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLESLQAHDCV--SAAYPGGSTTWRMLGPDAKIHDVQLSSRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIALLP  +++ +     LV ++      S  ++  YP   +    + AF   +  K R
Sbjct: 238 GIALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLR 296


>gi|167576740|ref|ZP_02369614.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 297

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 128/296 (43%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE +  ++L  R  R  T+TE G
Sbjct: 3   DLNDLYYFVKVVEHGGFTQAGRALGVPKSTLSRRIAALEAQYDVRLLQRTTRHFTVTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E  +  ++    +P G +R++    L +  + G +  F+ ++P +Q
Sbjct: 63  REFYDRCLGVLVEAEAAREVIERKHAEPQGIVRLSCPTALLEYRVSGLVARFMAIHPKVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAPH L     P S
Sbjct: 123 VHLEATNRRVDLLSEGIDLALRVRFPPLEDSGLVMRVLGDSPQRLVAAPHLLGGRDLPAS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     + +G   P     +  +                 +   ++    + G GIA
Sbjct: 183 PDELAGVPSVDWG---PPRHHLWQLVGPQGVEAQLRHHPRFITDDMHALRDAALHGVGIA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP  +V+D   +  LV ++   +     ++  +P       +++   +F+    +
Sbjct: 240 QLPCMVVEDDLRDGTLVDVLPGWVPKGGVIHAVFPSRRGLLPRVRLLIDFLAAHIQ 295


>gi|330875259|gb|EGH09408.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 299

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 133/299 (44%), Gaps = 11/299 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + +F +V  + SFT A ++L +S S + + I  LE  +G++LF+R+ R + LT +G
Sbjct: 3   SLGSIALFVLVTETRSFTLAGKRLGISSSGVGKSIGRLEESLGVRLFHRNTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +L+  Q+EL  +   P G+LRI+  +     L+   + +F+  YPDI+
Sbjct: 63  SIFLDRCRRILSELDAAQLELSNARDLPKGRLRISVPLVF--GLVMPVVIQFMRTYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R  +P   S L+ +++ +  +    +P Y      P   
Sbjct: 121 LDIDFSDRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCVVGSPDYFARHGLPEQP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +          E +           E     +  N+   +++    G GI  
Sbjct: 180 ADLVNHACLQHKFPSTGKFEHWPLRREAGSEDFE-LPQTMVCNTTEVLVEVARAGLGITC 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF----IFLKAR 295
           LPD+++        LV I+ D    + +    +P +   + +L+ F +F    +F  AR
Sbjct: 239 LPDFMLASAIRKGELVPILADYTLHTGSFRLFWPSSKHLSVRLRVFIDFMHANLFAPAR 297


>gi|221199296|ref|ZP_03572340.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205802|ref|ZP_03578817.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221174640|gb|EEE07072.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180581|gb|EEE12984.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 300

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD   L    V   V  +GSF  A E + L+Q ++SR ++ LE  +GI++F R AR +
Sbjct: 1   MRFDSRLLSGIGVLSAVIEAGSFARAGEAIGLTQPAVSRAVARLEERIGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++   +  K  G+LR+      G  +L   L  FL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEDAALDAGRAKEKVRGRLRVNVDGTFGHYVLAPKLAAFLE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+P Y+   
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGVP-EPSSYRARLLLETRVLTCASPAYVARH 179

Query: 178 REPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYC 235
            EP   ++L   H  +   D  P     F W       +        L VN   S++  C
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPFEWEFHRGGEVVPFAAAGRLMVNDTGSLLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G+G+A L +   +D      L  ++ D    +F +Y  Y  +   + K++ F +F+  
Sbjct: 238 LGGAGVAQLLELYARDIVSEGRLTLLLPDWTDETFPLYAYYHASNLVSAKVRVFLDFVRE 297


>gi|310639228|ref|YP_003943987.1| LysR family transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
 gi|308752804|gb|ADO43948.1| LysR family transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
          Length = 295

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 124/290 (42%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L  F  +A  G F  AA +L+L+ S++S  +  LE ++G++L  R  R + LTE G
Sbjct: 5   DFGELAAFVAIAEEGGFRRAAARLNLTPSTLSHSLRSLEEKLGVRLVSRTTRTVALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R     +  +ET    + +    P+G +R++    +   +L    + F   YPD+ 
Sbjct: 65  HALLRQIGPAFASIETAVETINDFRDHPAGTIRVSVPRTVAVRVLTPKFRAFTDRYPDVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  +N  +DI     D  IRL + ++   +  R    +     A+P Y      P + 
Sbjct: 125 LEVAAENGFVDIVKQGFDAGIRLGESLERDMIAVRVTPDLDTAVVASPDYFSRFPPPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  I +       +  +       R         L ++    ++   + G G+A 
Sbjct: 185 RDLHRHRCIGWRQTGSGALYRWE-FEKDGRAFNVAVNGPLVLDDPDLMVMAALDGVGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +  + ++     LVR+++D   P    +  YP   +    L+A    +
Sbjct: 244 STEQHIGEHLASGRLVRVLDDWCPPYPGFFLYYPSRRQAPAALRALVEML 293


>gi|167838893|ref|ZP_02465670.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 323

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 133/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EFL 
Sbjct: 61  ALTEAGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLPEFLR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++Q+ + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L+ 
Sbjct: 121 RYPEVRVQIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLQQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L   +  T           FN +A             L     ++I +  +
Sbjct: 181 NAPPLVPDDLAGFD--TLDTPSGDGRHVFNLIAPDGTRHAHEHEPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|107100334|ref|ZP_01364252.1| hypothetical protein PaerPA_01001359 [Pseudomonas aeruginosa PACS2]
 gi|218893155|ref|YP_002442024.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254245163|ref|ZP_04938485.1| hypothetical protein PA2G_06051 [Pseudomonas aeruginosa 2192]
 gi|296390770|ref|ZP_06880245.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313105759|ref|ZP_07792022.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|126198541|gb|EAZ62604.1| hypothetical protein PA2G_06051 [Pseudomonas aeruginosa 2192]
 gi|218773383|emb|CAW29195.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310878524|gb|EFQ37118.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 314

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 135/295 (45%), Gaps = 5/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   ++ +R F  VA +GSFT AA++L L+ + +SR ++ LE  +  +L +R  R + LT
Sbjct: 1   MDILFN-MRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   +E  + E  ++  +PSG L++     +GQ+ L   + ++   YP
Sbjct: 60  EAGQRYLMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++   L L N+  DI  +  D ++ +   +  S  + + +   +    A+P Y+     P
Sbjct: 120 EVGFDLTLANRITDILDEGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  +   + +   ++ + +     + +     +  QVN+  ++ +  V G G
Sbjct: 180 KLPAELSAHRCLRLVNSVM-SLDRWLFDGPDGQELACINQTHFQVNTADAMTEAVVSGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP Y   +   + +LVR++         VY  YP       K++ +  F+  
Sbjct: 239 IGALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFLRE 293


>gi|238024973|ref|YP_002909205.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879638|gb|ACR31970.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 304

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 137/304 (45%), Gaps = 10/304 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  +  SGS T AAEQL  + S +SR ++ LE ++G+ L  R  R   LT
Sbjct: 1   MKTSTEELQTFVAIIDSGSITAAAEQLGQTVSGVSRALNRLERKLGVTLLRRTTRSSQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L     E+   +E  +  +    V+P+G+LR+        + +   L  F   YP
Sbjct: 61  DEGELLLARAREILQAVEEAETAVSLGRVEPAGRLRVDAATPFMLHAIVPRLPAFTARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++L  + + ID+     D AIR+   +  S+L  R L +  +H  A+P YL     P
Sbjct: 121 DIALELSNNERFIDLIEQRIDIAIRIGA-LPDSTLHARPLGSSPLHVLASPAYLAAHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLA-----TVDRPIGEPRISCLQVNSYLSIMQYC 235
            S+ +L +H L+ F D+        +  A       D   G         +S  ++    
Sbjct: 180 RSVADLARHRLLGFSDIETLNRWPLHLRADGSGNGSDDGTGLAITPAHTASSGETLRHLG 239

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIF 291
           + G GI  L  ++  D+     LV ++ +++T     V   Y      TG+++ F +F+ 
Sbjct: 240 LAGIGIVCLSGFMTADDIAAGRLVPLLTELMTDYRQPVNAVYYRHAALTGRVQGFLDFLS 299

Query: 292 LKAR 295
              R
Sbjct: 300 QHVR 303


>gi|163803643|ref|ZP_02197507.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
 gi|159172553|gb|EDP57414.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
          Length = 314

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 61/291 (20%), Positives = 124/291 (42%), Gaps = 7/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  +FT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T T+ G   
Sbjct: 8   QMVIFAALIKHKNFTAAAKSLGVSVSHVSKQLSQLEASLGIKLVQRTTRSFTPTDAGQTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +V     +  +E++    + +G +R+  +   G   +   +++    YP ++++L
Sbjct: 68  YHHCQQVVQAASSATLEMESQRDEVAGTVRLGLSQSFGTLHIIPAIQQLRETYPLLKVEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  +   + +     I ++L        A+P YL    +P    +L
Sbjct: 128 HLFDYKVDMFEEGLDLWVTNNEHLP-EGYIAQRLADCQFVVAASPDYLLKHEKPTVPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +                 ++ +         V+   +I    + G GIA L  
Sbjct: 187 AQHNCLIYRSWERDYTSWA--FTNREQELNVKVSGNYSVDLAEAIRDAAIAGWGIAYLAT 244

Query: 247 YIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y++ D   +  L++++ D     +   Y  YP       K  A  +FI  +
Sbjct: 245 YLLDDEFRSGKLIQLLPDWRASQTMPFYAVYPSRQHMPKKTSAVIDFIKQR 295


>gi|312882079|ref|ZP_07741829.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370215|gb|EFP97717.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 291

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 143/290 (49%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++  S + ++L +   EL +     +GK+RI    +L + LL      F+  YPDI
Sbjct: 61  GERFYQECSPLLNRLTSATEELTDECRGAAGKIRIIAPSNLTKRLLMPIFNGFMAQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L   N    +     D   R+  P + SSLI RK+ ++     A+P YL  C  P  
Sbjct: 121 NIELTTSNHAEQLDPTEWDVIFRVG-PQRDSSLIARKIGSVADILVASPEYLSRCPAPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL +H+L+    L+   + +    + V+   G      +Q ++   +   C  G GI 
Sbjct: 180 AEELHQHSLLKGSPLLKWQLSNKTGESIVNNDKG-----RIQADTLDVVRLACSAGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L+PD ++K   D+ +LVR++ED       VY  Y        K++ F +F
Sbjct: 235 LMPDVMLKEYTDDGSLVRVLEDWSANPREVYMLYNHKDHLPEKVRLFIDF 284


>gi|27363612|ref|NP_759140.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37679244|ref|NP_933853.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|320157012|ref|YP_004189391.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
 gi|27359728|gb|AAO08667.1| Transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37197987|dbj|BAC93824.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319932324|gb|ADV87188.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
          Length = 314

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 116/291 (39%), Gaps = 7/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  +FT AA+ L +S S +S+Q++ LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVVFAALVKHQNFTSAAKSLAVSVSHVSKQLAQLEASLGIKLIQRTTRSFTPTEAGLAF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +V   +   Q E++    + +G +RI  +   G   +   + E    YP +Q+++
Sbjct: 68  YHHCQQVVQAVNNAQHEMESQRDEIAGLVRIGLSQSFGTLHILPAIDELRQKYPLLQVEM 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     I ++L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMLQEGLDLWITNHEHLP-EGYIAQRLADCQFVVAASPDYLLQHDAPKEPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN + +                    +         V+   ++    + G GI  L  
Sbjct: 187 ANHNCLIYRSWERDYTSWA--FRRQGEHLSVKVSGNYSVDLAEAVRDAAISGWGIGYLAT 244

Query: 247 YIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y++ D      L++++ D         Y  YP       K  A  +FI  K
Sbjct: 245 YLLGDEFRTGKLIQLLPDWRANQEMPFYAVYPSRQHMPKKTSAVIDFIKQK 295


>gi|262191780|ref|ZP_06049953.1| transcriptional regulator [Vibrio cholerae CT 5369-93]
 gi|262032358|gb|EEY50923.1| transcriptional regulator [Vibrio cholerae CT 5369-93]
          Length = 300

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 136/292 (46%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELGVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P
Sbjct: 125 DVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLAEHRCLT-GSVKRWSYQHKETKQTLD----VPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|186472197|ref|YP_001859539.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184194529|gb|ACC72493.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 308

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 129/291 (44%), Gaps = 11/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V  +G+F+ AA QL  + S++SRQI  LE  +G +L  R  R + +T+ G+++
Sbjct: 12  DMATFARVVDAGNFSEAARQLGSTPSTVSRQIKRLEESLGTRLLERSTRRIRVTDAGAQV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R   ++            +S  +P GK+ I+  I   ++++   + EFL  +PD+ +QL
Sbjct: 72  YRYCRDIVGAASGAVDVAGQSVGEPRGKVSISAPIAFARSVIHPLIPEFLRSWPDVDVQL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  ++++D   D  D  IRL +      L  R+L T+     A+P YL     P   ++L
Sbjct: 132 VFADREVDPLRDDVDIVIRLTRS-PPLGLAARRLGTVRWLLCASPAYLDAHGTPAEPRDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +  G+ +      F       +            N   + +   +   GIA LPD
Sbjct: 191 ARHECLYLGETVDDNRWHFR---RGTQTQSLEVRGRYIANHAGARLDAALQHFGIASLPD 247

Query: 247 YIVKD---NPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
           ++        +LV+++      +      V+  YP       K +A  +++
Sbjct: 248 FVAAQWLRQGDLVQVLAAWEFEARSYMGPVWLLYPPNRFLPSKARALIDYL 298


>gi|319780904|ref|YP_004140380.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166792|gb|ADV10330.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 302

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 141/294 (47%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSF+ AA  L ++ S++S+ I+ LE  +G +L  R  R L LT +G+  
Sbjct: 11  EIEVFVRVVEEGSFSSAARALRMTPSAVSKLIARLEARLGARLVSRSTRKLQLTPEGTAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   +   + E    +  P G++RI + +  G + L   L  FL  YP+I + L
Sbjct: 71  YESGLRILADMAAAEQEAAAGAS-PRGRVRINSYVPFGVHRLVPLLPRFLERYPEISVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  +D+  + AD AIR   P+  S L+ RKL    +   AAP YL+    PL+  +L
Sbjct: 130 VLTDSVVDLMAERADVAIRAG-PLSESRLVARKLGQSPVVVVAAPSYLETHGIPLTPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           DKHN + FG +  + ++ + +L    R I  P      V+   ++    + G+GIA L  
Sbjct: 189 DKHNRMGFGFV--RHLDGWPFLDAEGRVIMIPITGNTLVSDGEAMRLMALAGAGIARLAR 246

Query: 247 YIVKDN---PNLVRIMEDVIT-PSFTVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V ++     L  ++E          +  Y  +      +++AF +F+    R
Sbjct: 247 WHVAEDIAAGRLAPLLEAFNPGDEEPTHAVYVGQGRHLPARVRAFLDFLGESVR 300


>gi|78048553|ref|YP_364728.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925594|ref|ZP_08186979.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|78036983|emb|CAJ24694.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543994|gb|EGD15392.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 304

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 131/294 (44%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  V   GS T  A  L LS +  S+++  LE E+G++L +R  R L  T +G 
Sbjct: 4   LGDIALFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTAEGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +   L+    +L+ES+    G LR+  +   G+  +   L EF   +P ++I
Sbjct: 64  RLAERGRVLVEDLDALAEDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPRLRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L +  +D+     D AIR+  P++ S L+ R++        A+P YL+    P +  
Sbjct: 124 SAHLSDDLVDLVKQGFDLAIRIG-PLEDSGLVARRIADNRRTLAASPAYLQRHGTPRTPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  +    +     +D   L T D  +   R+ S  + N    +    V G GIA+
Sbjct: 183 ELAQHAGVLL--MGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAV 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + + D   +  LV +M D   P+  +    P       +++AF +F+  + 
Sbjct: 241 HSYWHIADELRSGRLVEVMRDYPPPTSHISAVTPARQLQPPRVRAFVDFLLERL 294


>gi|27379710|ref|NP_771239.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27352862|dbj|BAC49864.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 297

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L  F +VAR GSFT AA +L +SQS++S  I  LE  + ++L  R  R ++ T  G
Sbjct: 5   NLDDLAAFLIVAREGSFTRAAAKLGISQSALSYTIKELEARLKLRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R       ++ET  + L E   KPSG +RI  T      +L   L + L  YPDI+
Sbjct: 65  ERLLRNVGPRIAEIETELVALTELREKPSGTIRITATEYATDAVLLPKLAKLLREYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ D    DI     D  +R  + +    +  R      M    AP Y ++  EP   
Sbjct: 125 LEIVSDYGLTDIVAQRFDAGVRDGEQVARDMIAVRIGPDARMAVVGAPSYFRSRSEPKKP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L +HN I     +P     ++W         + R+   L  N+   ++Q  + G G+A
Sbjct: 185 SQLVEHNCINL--RLPTHGGLYSWEFEKGSRELKVRVDGQLVFNTTTQMLQAALAGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP+ +V+ +     L R++ED   P    +  YP   + +         +  +
Sbjct: 243 YLPEGLVRSHINKGRLKRVLEDWCPPYPGYHLYYPSRRQPSAAFALLVEALRHR 296


>gi|332305796|ref|YP_004433647.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173125|gb|AEE22379.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 305

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 9/294 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D     +VF +VA+  SF+ AA+ L+L  S++SRQI+ LE  +G++L  R  R + LT+
Sbjct: 1   MDIVKSFKVFQLVAQEQSFSRAADSLNLVPSAVSRQINELEHWLGVRLLNRTTRTVHLTK 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS     TS++   ++      +       GKL+I+  + LGQ+LL   +  F   +P+
Sbjct: 61  EGSDYLAKTSQIIELVD-ALKFKKNDHKNIEGKLKISAPMMLGQHLLPQIVAGFKRDFPN 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L N+ +D+  +  D A+R+   +  S+L+ RKL  +     A+  YL +   P 
Sbjct: 120 VKLSLFLLNRKVDLIEEGFDLALRVSH-LADSNLVARKLGNLSFATVASSDYLASNGTPQ 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H+ +    +       +       R         +  N  L+++     G G+
Sbjct: 179 VPTDLQQHSCLINSAVSSANRWGY---KINGRGKNVKVAGDIDANESLALLSLAKQGQGV 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A LP+  V+    N  LV ++ +       +   Y      +  LK F +++  
Sbjct: 236 AFLPEVYVQKELANGTLVEVLREFRPEPLPINLLYVSNRLVSPVLKTFIDYVVA 289


>gi|17549690|ref|NP_523030.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431945|emb|CAD18622.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 297

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 131/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR  SFT AA QL +S S++S  +  LET +GI+L  R  R ++ TE G
Sbjct: 5   NYHDLLAFLAVARERSFTRAAAQLGVSPSALSHTVRALETRLGIRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + +++     + E    PSG +RI TT    + LL   L + L  YPD++
Sbjct: 65  ERLLQSIAPRFEEIDAELAAIGELRDTPSGTVRITTTDYAIRTLLWPKLSKVLHDYPDVK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D    DI  +  D  +RL   +    +  R    + M    AP YLK    P + 
Sbjct: 125 VEFVTDYGLTDIVAERYDIGVRLGDTLAKDMIAARIAPDLRMVIVGAPAYLKRHPAPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W     +   + R+   L  N    I+   + G G+A
Sbjct: 185 QDLTAHRCINL--RLPTRGGVYAWELKKGQREIQVRVDGQLTFNGVYEILDAALSGYGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+ + + +     L  ++ED        +  YP   +++  L    + +  +
Sbjct: 243 YMPEDLAQPHVAAGRLKWVLEDWFPTFPGYHVYYPSRRQSSRALTLVIDALRDR 296


>gi|157374744|ref|YP_001473344.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157317118|gb|ABV36216.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 295

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 139/299 (46%), Gaps = 14/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    +L  F  V  +GS + A+    +  SSISRQ+  LE E+GI L  R  R + LT
Sbjct: 1   MSM-ITRLHYFNCVVETGSISEASRVFDVQPSSISRQLIALEKELGISLINRTTRNIGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++ +  +  +L+     + +    P G L+++ T+  G++ +   +  F+ L+P
Sbjct: 60  EAGLTYYQYSQRIVSELDEAHRAVNDLQQNPKGSLKVSMTVGFGESCVLPLVPVFISLFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+I+L L  + ID+  D  D AIR  + +  S+LI RKL   +    ++P YL     P
Sbjct: 120 DIKIELELTERVIDLVEDNVDIAIRSGR-LPDSNLIARKLADNNFLLCSSPQYLAQHGSP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + Q L   + I +G          +W    ++P        + VNS     Q  +  +G
Sbjct: 179 ETPQALTDFDCIRYGYAG-----WRDWYLMDEKPKKLSIRDGITVNSVNGQKQLLLSHAG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFL 292
           +AL+P + V+D   N +L  ++       +    + Y  Y      + K++ F +++  
Sbjct: 234 LALMPLWAVRDELKNGSLTHVLNQHTFSPYESMSSTYAIYLRRELISPKIRVFLDYLKE 292


>gi|71733708|ref|YP_273827.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554261|gb|AAZ33472.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 306

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F+++A+ GS    A +L ++  +IS+++S LE  +G +L  R  R ++LT +G  
Sbjct: 5   QDLSFFHLLAQQGSLAATARELGVTPPAISKRLSLLEARLGTRLVNRTTRSMSLTAEGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +  +++  +  +  SS  P G +R+  ++  G+  +   L  F   YP++QIQ
Sbjct: 65  YFSHAARILTQIDEVEQLITSSSASPKGLIRVNASLGFGRRHIGPALAAFFARYPEVQIQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +  +D+++   D  IR    +  ++   RK+ +      A+P YL+    P  + E
Sbjct: 125 LEISDHPLDLAIHGFDLGIRFGS-LPDAAFHARKIASNRRLLCASPLYLEKHGTPTRLAE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN I                +   R         L  N     + + + G GI L  
Sbjct: 184 LQHHNCIFLRQNETPYGVWS--FSNGGRTQNVKVHGALGCNDGEVALNWALEGFGILLRA 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ +     +  L  ++ED       VY  YP+ L  + +++   NF+  +
Sbjct: 242 EWDIARYVRSGRLRLVLEDQTPTRADVYAVYPQQLHLSARVRYLINFLVER 292


>gi|126446435|ref|YP_001077982.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|238562568|ref|ZP_00440194.2| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|251767019|ref|ZP_02265687.2| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254200964|ref|ZP_04907329.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254204928|ref|ZP_04911281.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|126239289|gb|ABO02401.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|147748576|gb|EDK55651.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754514|gb|EDK61578.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|238522345|gb|EEP85790.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243064166|gb|EES46352.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 330

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 137/306 (44%), Gaps = 9/306 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 8   MTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKL 67

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EFL 
Sbjct: 68  ALTEAGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLLEFLR 127

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++Q+ + N+ ID+  D  D A+R+R +P QS++++ R L         AP  L+ 
Sbjct: 128 RYPEVRVQIRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVGAPSLLQQ 187

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL+  +L   +  T           FN +A             L     ++I +  +
Sbjct: 188 NAPPLAPDDLAGFD--TLDTPSGDGRHVFNLIAPDGTRHTHEHEPRLVTADLMTIREAVL 245

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 246 DGGGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 305

Query: 294 ARDWKF 299
             + ++
Sbjct: 306 LDNERY 311


>gi|71281974|ref|YP_268199.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147714|gb|AAZ28187.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 300

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 140/297 (47%), Gaps = 14/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    +L  F  V  +GS + A+    +  SSISRQ++ LE E+G+ L  R +R + LT
Sbjct: 3   MSM-LTRLHYFNCVVETGSISKASRIFDVQPSSISRQLTALEKELGVLLLKRTSRNIGLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++ + ++   L+  +  + +   KP G L+++  +   +  +   +  F  LYP
Sbjct: 62  EAGQTYYKYSQKIVSDLDEARCAVNDLQQKPKGNLKVSMAVGFAECCILPMIPTFTKLYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L +  + +D+  +  D AIR  + ++ S+LI  KL + +    A+P Y+     P
Sbjct: 122 EINLELEMTGRVVDLVEENVDVAIRTGR-LRDSNLIALKLTSNNFLLCASPQYITEHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S   L     I +     +     +W    D+P      S L V S     Q  +  +G
Sbjct: 181 KSPFNLTDFECIRY-----EYAGWRDWYLMNDKPTKLTIKSGLTVRSINGQKQLILNHAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFI 290
           +AL+P + V    DN  LV+++E  I   +    + Y  Y +    + K++ F +FI
Sbjct: 236 LALMPKWSVINELDNGTLVQVLEQNIFSPYESMSSTYAIYLKRELISPKVRVFIDFI 292


>gi|254224675|ref|ZP_04918291.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125622738|gb|EAZ51056.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 301

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 136/292 (46%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L L +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P
Sbjct: 125 DVRIHLDLSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLADHRCLT-GSVKRWSYQHKETKQTLD----VPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|227328769|ref|ZP_03832793.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 301

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 132/297 (44%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +++ L  F  VAR GSFT AA QL ++Q ++S+ I+GLE  + I+L  R  R ++ T
Sbjct: 1   MKRNFNDLLSFVTVAREGSFTRAAAQLGVTQPALSQAITGLENRMQIRLLTRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L +     + ++E     L E   KP+G +RI    ++ +  L   L   L  YP
Sbjct: 61  AAGERLLQAIGNRFDEIEAELDNLTEFRDKPAGTVRITCGPNVLRTTLLPKLLPLLREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
           DI+++   ++   +I  D  D  +RL + I    +I   +   + M A A+P Y      
Sbjct: 121 DIKLEFDANHGFRNIVADRFDAGVRLGEAI-DKDMIAVPIGQPLRMAAVASPDYFAKHPI 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P +  EL +H  I    +    +  + W    D      R+   L  N+   I++  + G
Sbjct: 180 PNTPHELTQHQCINQRMVTSGGL--YVWDFDQDGGDLNVRVDGQLTFNTSEHIVEAALAG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIA LP+       +   L+R++E    P    Y  YP   + +       + +  
Sbjct: 238 FGIAFLPEEEFSPHIEEGRLIRVLEPWCAPFSGYYLYYPSRKQPSPAFSLVVDALRE 294


>gi|306840992|ref|ZP_07473732.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306288999|gb|EFM60267.1| LysR family transcriptional regulator [Brucella sp. BO2]
          Length = 287

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 119/275 (43%), Gaps = 11/275 (4%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79
            + AA  L LS + +S+++  LE  +G +L  R  R + LTE G   H     +   +E 
Sbjct: 1   MSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTEAGQGYHERVLAILANIEE 60

Query: 80  TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139
            +  +   S    G L+I+     G+  +   L  F+    D+ + + L ++ +DI  D 
Sbjct: 61  AEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRANADLTVNMQLSDEMVDIVGDG 120

Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIP 199
            D AIR+ + +  S+L+ R+L  +     AAP YLK    P +I++L  H  +   +  P
Sbjct: 121 YDLAIRIGE-LSDSTLVARRLAPVRRIFVAAPRYLKERGTPQTIEDLQDHICLAPHNNDP 179

Query: 200 KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLV 256
             +E          PI       LQ NS   + +  + G GIA    + V        LV
Sbjct: 180 WRLE------GPKGPIVIRPTGPLQTNSSEIVREAVLAGLGIAQRSTWDVGPELAAGKLV 233

Query: 257 RIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           +++ D        ++  YP       K++ F +++
Sbjct: 234 QVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYL 268


>gi|94313791|ref|YP_587000.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93357643|gb|ABF11731.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 308

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 138/286 (48%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GSF  AAE L L +++++R I  LET +G+KL +R  R +++T  G+  +
Sbjct: 7   MQAFTRVVDVGSFARAAESLDLPKATLTRLIQNLETHLGVKLLHRTTRRISVTTDGAAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  +  L   +  P G L + TT  L Q +L  +L +F   YPD++++L 
Sbjct: 67  ERCVRILADVEEAEQSLTRHNNSPRGTLCVDTTSGLAQMVLLPHLHDFFKAYPDLKLELT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++ K ID+  +  D  +R+       S++ R++  + +  YA+P YL+    P ++ EL 
Sbjct: 127 INGKPIDLLKEGVDVVLRVGA--LDESMVARRIGQLKLAFYASPIYLRRVGTPQNLTELA 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + F  L  +   +  W  +      E  + S +  N     M   + G GIA +  
Sbjct: 185 QHKAVNF--LSNRTGREMPWPLSRGGERTEVLLPSAISTNDADVYMACALEGHGIARISR 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + +   ++  LV +M D  T    +   YP+    + K++ F N+
Sbjct: 243 AMAEPYVNSGRLVEVMSDWQTDELPISAMYPQNRHLSAKVRVFVNW 288


>gi|311109094|ref|YP_003981947.1| HTH-type transcriptional regulator YafC 2 [Achromobacter
           xylosoxidans A8]
 gi|310763783|gb|ADP19232.1| uncharacterized HTH-type transcriptional regulator YafC 2
           [Achromobacter xylosoxidans A8]
          Length = 293

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 142/297 (47%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS + D LR+F  V  +GS + AAE L  + S +SR +S LE E+G+ L  R  R + LT
Sbjct: 1   MSLNSDALRLFLGVVDAGSLSAAAELLGHTASGVSRGLSRLEEELGVTLLNRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   L+  +  ++    +P+G+LR+  ++ +  + +   + EF   YP
Sbjct: 61  EEGKHFLPKARHIVASLDEAEDCMRMVHQRPAGRLRVDASVPVMLHCVVPLVAEFRREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  +++ +D+     D A+R+  P+  S+L  R L        A+P Y+     P
Sbjct: 121 AITLELTSNDRIVDLMEHRTDVALRMG-PLTDSTLHARPLRPSPRWVMASPDYVARRGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L  H ++ F    P+ +  +              +  L  +S  +  Q  V G G
Sbjct: 180 ETVEDLAAHEVLGFTQ--PESLNVWPLRHAGGSSYLA--MPTLATSSGETQRQLAVRGVG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA L D++V+++     LV++ME   T     ++  Y    + + ++  F +F+  +
Sbjct: 236 IACLSDFVVREDVKAGRLVKLMEAAHTDYLQPMHAVYYRNTQLSRRIACFLDFLAAR 292


>gi|259909148|ref|YP_002649504.1| transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96]
 gi|224964770|emb|CAX56287.1| transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96]
          Length = 297

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 143/305 (46%), Gaps = 19/305 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V    SFT AA+ L + + ++S+ I  LE ++G+KL +R  R L++T +G 
Sbjct: 2   LELMGIFVHVVDLHSFTKAADTLQMHRPAVSKSIQQLEDDLGVKLLHRTTRSLSVTAEGD 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++++    + + +      +   +  P G+LRI   + L   +L  +L EF  LYP I+I
Sbjct: 62  EIYQRAKTLLNDVNEMMASV-SPTQPPRGRLRIDAPLALTHAILIPSLGEFQALYPQIEI 120

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++  D+  +  DC IRL + +  SS I R++  + M   AAP YL     P++  
Sbjct: 121 VLTASDRLTDLVSEGIDCVIRLGE-LVDSSFISRRVGNVRMTTCAAPSYLDKYGTPVTPD 179

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI-- 241
           +L+ H  I F        E   W   +D  +   R    + VN+   ++   + G G+  
Sbjct: 180 DLEHHKAIHF--FSEHSREVMEWKYVMDGEVISRRPGSNMLVNNSDVLLSCGLAGLGMIH 237

Query: 242 ----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKA 294
               AL P      +  L  ++ D  T +  V   +P+      K++ F ++   IF  A
Sbjct: 238 ALHTALEPHI---QSGRLREVLTDYATITKPVSILFPDRRYLPPKVRVFIDWFSDIF--A 292

Query: 295 RDWKF 299
           R+++ 
Sbjct: 293 RNYQL 297


>gi|49085314|gb|AAT51268.1| PA0876 [synthetic construct]
          Length = 315

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 134/295 (45%), Gaps = 5/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   ++ +R F  VA +GSFT AA++L L+ + +SR ++ LE  +  +L +R  R + LT
Sbjct: 1   MDILFN-MRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   +E  + E  ++  +PSG L++     +GQ+ L   + ++   YP
Sbjct: 60  EAGQRYLMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++   L L N+  DI     D ++ +   +  S  + + +   +    A+P Y+     P
Sbjct: 120 EVGFDLTLANRITDILDGGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  +   + +   ++ + +     + +     +  QVN+  ++ +  V G G
Sbjct: 180 KLPAELSAHRCLRLVNSVM-SLDRWLFDGPDGQELACINQTHFQVNTADAMTEAVVSGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP Y   +   + +LVR++         VY  YP       K++ +  F+  
Sbjct: 239 IGALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFLRE 293


>gi|15595357|ref|NP_248849.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9945991|gb|AAG03549.1|AE004454_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 312

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G
Sbjct: 3   TLQGMRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD+ 
Sbjct: 63  ERYLERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+
Sbjct: 123 IELTLSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L++H  +   D  P   E + +          P+ +   VN    + Q      GIAL
Sbjct: 183 DDLERHVCLRLQD--PAYPEGWIFADEQGERTVSPQ-NTFMVNVAEVMAQAAKADLGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+      N  L+R++        T+Y  YP       K++ + + +  + 
Sbjct: 240 LPSYVAAAALRNGELLRVLPGHAMHQRTIYALYPSRRYLDAKIRTWVDLLQQEL 293


>gi|325521619|gb|EGD00398.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 313

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 136/297 (45%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++     LGQ+ L   +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAVARYRERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+  +  D AI + + +  S L+ ++L   +    AAP Y++    P 
Sbjct: 121 VHVELTLAQRLPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCAAPSYIEQHGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSG 240
              +L +H  I  G + P    D   LA  +     P      +VN   ++      G G
Sbjct: 181 RPADLAQH--ICLGMVTPGFQYDEWILAGPNGDEVVPIEAPPFRVNVAEALAVAVREGMG 238

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            A LP Y       + ++VR+M +  +    +Y  Y        K++ + +F+  + 
Sbjct: 239 RAGLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALYASRQYLDAKIRTWVDFLRDEL 295


>gi|270261694|ref|ZP_06189967.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270045178|gb|EFA18269.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 309

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 4/296 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     L  F  VAR GSFT AA QL ++  ++S+ I  LET +G++LF R +R + L+
Sbjct: 1   MSSLLQLLPFFEAVARLGSFTQAANQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +R  +    +++    +L+    +PSG LRI         L+   L+EF   YP
Sbjct: 61  DEGKIFYRRVAPAMSQIDVAADDLRILRGQPSGLLRITLPQLAASLLVMPYLEEFQARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q++L  D+   D+ +   D  IR+R  +Q   +             A+P YL     P
Sbjct: 121 EVQLELFTDDHFSDLVLGSFDAGIRMRAMLQKDMIAVPIDNGQRRVVIASPGYLAQRGVP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+   L +HN + +        E + +    D  +       L  N    I    + G G
Sbjct: 181 LTPAALSEHNCLRYRFPGSGKFEPW-YFRQNDEHLSLEVGGSLIFNEDRLIKDAALAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +       V+   +N  LV ++ D    S   +  +P +     KL+ F +F+  K
Sbjct: 240 MTQRFRGTVQRELENGQLVEVLADYAGDSPGFFIYFPASRHMPLKLRVFVDFMREK 295


>gi|212709405|ref|ZP_03317533.1| hypothetical protein PROVALCAL_00444 [Providencia alcalifaciens DSM
           30120]
 gi|212687920|gb|EEB47448.1| hypothetical protein PROVALCAL_00444 [Providencia alcalifaciens DSM
           30120]
          Length = 301

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 127/296 (42%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  F  V   G F+ A   L + +S +SR+I+ LE ++ + L YR  R   +T
Sbjct: 1   MQYDLNDLYYFVKVVEYGGFSQAGAALGIPKSKLSRRIADLEQKLNVSLIYRSTRQFHVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++    V  + +     +      P G ++++  + L Q  LQ  L +F+  YP
Sbjct: 61  EIGQVFYQQCKNVVEEADIAHELICSVQTHPKGTIKLSCPVTLLQVYLQDTLIDFMAKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI +Q++  N+ +D+  +  D A+R+R  P+  S L+ + L        A+P        
Sbjct: 121 DIDVQILAVNRPVDVISEGLDLALRVRSLPLDDSGLMMKVLGYSRRILIASPSLFNEKGY 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + ++L  + ++   +         +   + D  +       L     L++ +  V G 
Sbjct: 181 PSTPEQLVDYPIL--ANTEHSQRYTLSLKNSDDLSVTVHVTPKLATTDILTLYRAAVKGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA LP  +V+       LV ++     P   ++  YP        ++ F  ++  
Sbjct: 239 GIARLPQGVVEKELKRGELVEVLPHWQFPEDIIHAVYPSRKGLLPAVQLFLTYLAE 294


>gi|120553080|ref|YP_957431.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8]
 gi|120322929|gb|ABM17244.1| transcriptional regulator [Marinobacter aquaeolei VT8]
          Length = 302

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 138/292 (47%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R F +V   GSFT AA++L  S   +S+ +S LET +G++L  R  R L LTE
Sbjct: 1   MDRIEAMRTFVMVVNEGSFTRAADRLDTSPQLVSKYVSQLETHLGVRLLNRTTRRLHLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +    +V   ++  + +L +   +  G LRI+  +      +   L EF  ++P 
Sbjct: 61  AGRQYYPRAQQVLSDIDDLENQLGDLQTEAQGLLRISAPVSFAIRHMPALLTEFQRMHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L+++ +DI  +  D A+R+ + +QSSSLI +++  + +   A+P YL     P 
Sbjct: 121 VGIDLQLNDRKVDIVEEGFDIALRIGR-LQSSSLIAKRVAPVRLVLCASPAYLARYGTPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  + +  + P            +R      +  +  N+   +++  + G+GI
Sbjct: 180 KPEDLRDHQYLRYSYMDPDSSHSPQKWLQDNRSD---NLQGMVSNNGDVLVEAAIAGAGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL P +I         L  ++ +       +Y  Y        K+++F +FI
Sbjct: 237 ALQPTFIAGPAIREGKLTIVLPEHEPEPLGLYAVYAHRQLLASKVRSFIDFI 288


>gi|288935439|ref|YP_003439498.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890148|gb|ADC58466.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 306

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 137/298 (45%), Gaps = 8/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D+D+L  F  VA +GSF  A+ +L    S ISR++S LE ++G++L  R  R +TLT
Sbjct: 1   MFDDFDELMAFVCVAEAGSFIGASLRLERDASVISRRVSHLEKKLGVRLLVRTTRSVTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+   +       +L     E+ + +  P G LR++  +  G+ L+     +FL  YP
Sbjct: 61  EAGTWFLQRARTALDELSAASREVGDFAATPQGTLRVSLPVTFGRELIAPMFPDFLQAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++     ++ +DI  +  D  IRL   ++ S+L  R+L        A+P YL+   EP
Sbjct: 121 DIRLDAHFLDRRVDIVAEGFDAVIRLGN-LRDSTLTGRELGAFRSQLIASPAYLQRYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  + F          +  L      I       L  N   +++   +  +G
Sbjct: 180 THPEQLAAHRCLGF---THHPDWPYWILENGREHIQVTPAGPLTTNISEALLTAVIRATG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IALLP ++V        LVR++ D  + +  +VY   P       K + F + +  + 
Sbjct: 237 IALLPGWMVNQAVQCGELVRVLPDWRSAARVSVYALMPPGTLVPAKTRVFIDAVCQQL 294


>gi|21244486|ref|NP_644068.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21110154|gb|AAM38604.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 308

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R F  V  +GSFT AAE LH+S++S ++ +  LE  + +KL  R  R + +T 
Sbjct: 1   MDRFDAMRAFARVVETGSFTKAAEHLHMSRASATQLVQQLEARLRVKLLNRTTRRVQVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  ++  P G+LR+     L   +L   L  F   YP 
Sbjct: 61  DGAAYYERVLRLLADMDDAETSLSVAATSPRGRLRVDVPSPLALLILMPALPAFHARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +D+  +  DC IR    I   SLI R +  +    YAAP YL+    P 
Sbjct: 121 IQLDMGVSDRRVDLIGENVDCVIR-GGTITDQSLIARHVGDLQAGVYAAPDYLQRLGTPT 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              EL+  +H  + F          +  +   D  +       +  +   + +   + G 
Sbjct: 180 HPTELENTRHRCVGFMRWGSSTTVPYV-MQRGDEAVRVHGRHVVAADDGNAYLAAGLAGM 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+   +     LV I +D    +  +   +P     + KL+ F +++  
Sbjct: 239 GVLWLPVYMANAHVASGELVPIFQDWQLEAMPLSIAFPPNRHVSAKLRVFIDWVIA 294


>gi|193078755|gb|ABO13827.2| putative transcription activator [Acinetobacter baumannii ATCC
           17978]
          Length = 300

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 145/300 (48%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT
Sbjct: 1   MKSTIEELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YP
Sbjct: 61  QEGQQFLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+I+L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P
Sbjct: 121 DIEIELNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL++H+LI F    P  +  +      +    + +I   + +S  ++ Q  + G G
Sbjct: 180 TQPEELEQHDLIGFTK--PTYINSWPIKVGDEYFFAQSKI---KASSGETVRQLTIRGHG 234

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ +    +   L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|330821561|ref|YP_004350423.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327373556|gb|AEA64911.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 306

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 132/290 (45%), Gaps = 9/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F  AAE + ++   +SR I+ LE  + I+LF R  R ++LT++G + +
Sbjct: 12  ISVFAAVVDTGTFAAAAEVIGMTPPGVSRAIARLEKRLKIRLFNRTTRSVSLTDEGRRFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE         +    G+LR+         +L   L+ F+  +P + +++I
Sbjct: 72  EQVMPHLAGLEEAAAAASGDAAVVRGRLRVNLDPVCYGLVLGAPLERFMAAHPGLDVEVI 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+ ++  D AI+  +P ++S+L+ RKL    +   AAP YL     PL  ++L 
Sbjct: 132 ARDTVGDLVLEGFDLAIQFGEP-KASTLVARKLFDTGVVTVAAPAYLARHGRPLRPEDLA 190

Query: 188 --KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              H +I F +  P+    + W      R +       L VN   + ++ CV G G+A +
Sbjct: 191 GEGHRVIEFRN--PETGRPYRWEFRRKRRHLVVEARGRLTVNDPAAHVRACVAGLGVAQM 248

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             + V+       LV +  D     F +Y  YP       + +AF +F+ 
Sbjct: 249 LAFAVEPMIAAGQLVNLFPDWADERFPLYAYYPSRQHLPARTRAFLDFVI 298


>gi|307725925|ref|YP_003909138.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586450|gb|ADN59847.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 326

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 133/302 (44%), Gaps = 8/302 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           S D +  ++    VA +G F+ AA++L ++ SS++R +  LE  +G  L  R  R ++LT
Sbjct: 20  SMDKFLAVKTLLEVADAGGFSKAAQRLGVATSSVTRLMDSLEASLGTALLTRTPRKVSLT 79

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G       S+V   L      + +S   P G LRIA     G+  L  +L  FL  +P
Sbjct: 80  DAGIAYVEQVSKVLDDLAEADDSVFDSGASPVGALRIAVPSTYGRLCLAPHLAAFLAEHP 139

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +++ +  +D++++  D A+R+    + ++LI RKL     H  A+  YL+    P
Sbjct: 140 RVFLDVVVSDHFVDLAVERIDVAVRIGPAERDANLIVRKLADNPRHVVASREYLRRHGTP 199

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H  + F                   P        L  NS   +++  + GSG
Sbjct: 200 RTPAELAGHECLRFAYGGGYRSRQVWTFQRDGEPQPVEVRGRLLSNSLDVLLEAALAGSG 259

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLK 293
           IALLP + V        L+R+ E            VY  Y    + + K++A   F+  +
Sbjct: 260 IALLPQWQVAAEVHAGRLMRLFEPFDARPQAGDAVVYAAYLPNRRQSSKVRALLQFLEPR 319

Query: 294 AR 295
            +
Sbjct: 320 LQ 321


>gi|238027757|ref|YP_002911988.1| hypothetical protein bglu_1g21810 [Burkholderia glumae BGR1]
 gi|237876951|gb|ACR29284.1| Hypothetical protein bglu_1g21810 [Burkholderia glumae BGR1]
          Length = 313

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 130/292 (44%), Gaps = 4/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE G
Sbjct: 3   TLQNMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +   ++   ++  + E  ++  +PSGKLR+ +   LGQ+     +  +   YP++Q
Sbjct: 63  ERYLQRCEQILAYVDQAEAEAGDAHARPSGKLRVHSMTSLGQHYAVPMIARYRQRYPEVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L  +  D+  +  D ++ + + +  S L+ ++L      A A+  YL+    P   
Sbjct: 123 VDLTLAQRLPDLLDEGFDVSVVVDRHLPDSGLVSQRLGETFSVACASADYLERHGVPQRP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++LD H  +          +D+  +         P      VN   ++      G G+ +
Sbjct: 183 EDLDAHACLGMV-ATGFVWDDWTLVGPDGEEHFPPAQRSFCVNVAEALAVAIREGMGVGV 241

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP +         + VR+M +  +    +Y  YP       K++ + +F+  
Sbjct: 242 LPLHTAIAGLRAGDFVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFMRE 293


>gi|311107070|ref|YP_003979923.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761759|gb|ADP17208.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           130 [Achromobacter xylosoxidans A8]
          Length = 301

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 130/288 (45%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V   GSFT AA +L +S +S+S+ +S LE  +G  L  R  R + LT+ G   
Sbjct: 6   AMSVFCKVVEHGSFTVAATRLDMSTASVSKNVSALEDHIGTPLLARTTRRIVLTDAGKTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   S +   +E  +    +    P G L++   I  G   L   +  F   +P++ +++
Sbjct: 66  YDKCSRILEDVEEAERTAGQVQTTPRGLLKVRAPISFGSANLGRLITAFTTSFPEVTVEM 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ +D + +  D A+ +    +  +   + + T+     AAP YL+    P  IQ+L
Sbjct: 126 TLNDRYLDPAEEGVDVALYIGATPKHFAAGAQAIATLPRMLVAAPLYLERQGLPTEIQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  + +     +      W  T +       +S  L+ N+  ++    + G+G+ LLP
Sbjct: 186 ASHQCLVYT----RGASPSEWRFTRNGVEQTVHVSGSLRCNNSQTLHDAALSGAGVGLLP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++V  +     L  ++ D       +Y  YP+  +++ K++ F   +
Sbjct: 242 TFLVAQDLACGRLTHLLPDWQPAERNLYAVYPQPRRSSPKVREFVELL 289


>gi|226942158|ref|YP_002797232.1| Transcriptional regulator, LysR family [Laribacter hongkongensis
           HLHK9]
 gi|226717085|gb|ACO76223.1| Transcriptional regulator, LysR family [Laribacter hongkongensis
           HLHK9]
          Length = 301

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +R F  V   GSF+ A+  L L +S +SR+I+GLE+ +G++L  R  R L LTE G
Sbjct: 3   DLNDMRYFAEVVERGSFSAASRALGLPKSRLSRRIAGLESRLGVRLMQRTTRRLALTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R  + V  + +     +     +P G +R++  + L Q +L  +L  FL  YP ++
Sbjct: 63  ELFYRHCAVVRDEADMAAETVARLQAEPRGVVRVSCPVTLAQTMLGPHLPAFLAAYPQVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + + + N+ +D+  +  D A+R+R  +  S SL+ ++L   H    A+P  L     P S
Sbjct: 123 LDMRVSNRAVDLVEEGLDVALRVRPTLADSGSLVVKRLGVAHTVLVASPEQLTRQGRPRS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL + + +    +  +           D P        L  +  LS+    + G G  
Sbjct: 183 PDELVRLDTVAMSAVDGRTTWLLQGPDGQDYPFQH--TPRLLADDLLSLRFAVLAGVGAT 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY+ +++     L  ++         ++  +P        ++ F +F+
Sbjct: 241 YLPDYLCREDVMAGRLELVLPGWAPCPGIIHAVFPSRRGQVPAVRVFLDFL 291


>gi|222086891|ref|YP_002545425.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724339|gb|ACM27495.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 303

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 10/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +RVF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFDAMRVFSRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +E  +     +  KP G LR+     L ++ +  NL  FL  YP+
Sbjct: 61  DGEAYYQRCLRILSDIEDAEGAFAGA--KPKGLLRVDVHGTLARHFVLPNLPSFLETYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  DC +R+  P Q S +I R++  +     AAP Y++    P 
Sbjct: 119 IELYMSEGDRFVDLIREGIDCVLRVGTP-QDSDMIARRVAMLEEITLAAPAYIERFGMPT 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             + LD H ++ F       +       TVD  I    + + + VN+  S      LG G
Sbjct: 178 HPEALDGHRMVGFRSSATGGLLPLE--FTVDGAIRNITLPATVSVNAAESYFSAAKLGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +P Y  ++   +  LV +++D       V   YP   + + +++ F +++ 
Sbjct: 236 LIQVPRYHAEEALKSGELVHVLKDFPPTRTPVSMLYPRNRQLSPRVRVFIDWLV 289


>gi|262373106|ref|ZP_06066385.1| transcriptional regulator [Acinetobacter junii SH205]
 gi|262313131|gb|EEY94216.1| transcriptional regulator [Acinetobacter junii SH205]
          Length = 303

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 139/299 (46%), Gaps = 8/299 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              +  + +F +VA   SF+ AA    +  +++SR I+ LE  +   LF R  R + LT 
Sbjct: 7   RMMFSSVELFCLVAEYESFSKAALHAGVGPAAVSRSIARLEKHLATPLFVRTTRQVRLTT 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG        +  +++   + +L+  + +PSG +RI+     G   +   L +F   YP 
Sbjct: 67  QGKIYFDECKQALNQILEAEQQLKNQTQQPSGLIRISVPTPYGHYRILPLLAKFSQQYPS 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + L NK++D   +  D AIR  +    S+LI R+L    +   A+P YLK    P 
Sbjct: 127 IQVDVQLTNKNVDFIAEGYDLAIR-GRQFADSNLIARQLEQAELIVVASPEYLKQFGTPQ 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGS 239
           S+++L  H  I F  ++P   ++  WL   ++ + E + +     ++  L  +      +
Sbjct: 186 SLEDLQHHQCIQF--VLPSTGKNVPWLFNSNQQLIEYQSAGNIRCLDDILGTVTLAKHSA 243

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+     +IV++   N +L+ ++ +    S      YP     +  ++ F +F+  + +
Sbjct: 244 GLLQTYRFIVENELKNGDLIEVLTEFSGTSRPFSLLYPSKKHESFHIRVFIDFLLKELK 302


>gi|114800121|ref|YP_759389.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114740295|gb|ABI78420.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 306

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 139/293 (47%), Gaps = 12/293 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +++F  VA +GSF+ AA  L L Q ++SR+I  LE  +G  LF R  R L+LTE
Sbjct: 1   MDRIEAMQLFVRVADAGSFSRAAADLELGQPTVSRRIQDLEASLGTTLFQRTTRALSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +R   ++  + +  + E +     P G LRI+ +    + ++   +  FL  Y  
Sbjct: 61  AGERFYRRAVDILTEFDEAEAEARGLEHSPVGLLRISCSHSFARRVVAPAVPGFLAAYSS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+  L+ D+   D+  +  D A RL + ++ S L+ +KL       +A+P Y+     P 
Sbjct: 121 IRFDLVSDDSLTDLVSEGIDIAFRLGE-LRDSRLMAKKLGEAPQVLWASPEYIARHGAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +++E+  HN + F     +      W  +      E R+    + +S  ++++    G G
Sbjct: 180 TVEEVGNHNAVVF-----RHNRQTVWDLSRGNEHFEARVDGPFRASSGETLLEAAAGGLG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I L P ++  +   +  LVR++ +   PS +++  +       GK + F   I
Sbjct: 235 ILLAPAWLASECFGDQRLVRVLPEWQGPSLSIHAVWTSGK-LRGKARLFVEHI 286


>gi|89094791|ref|ZP_01167725.1| LysR protein [Oceanospirillum sp. MED92]
 gi|89080956|gb|EAR60194.1| LysR protein [Oceanospirillum sp. MED92]
          Length = 303

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 140/300 (46%), Gaps = 6/300 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +++L +F+ + + GS   AA +L ++  S+S+ +  LE  +G+ LF R  R + LTE G
Sbjct: 5   TFNQLTIFHAIVQEGSIRGAARKLEIAPPSVSQALKQLENHLGLPLFTRSTRSIELTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +LH  T      L+     +Q+ S K SG++ I     + +  L+    EF  LYPDIQ
Sbjct: 65  EQLHEETRSALSTLDFALESVQDLSEKASGRVSITLPHFVFEIFLKPIYAEFCDLYPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLS 182
           +++ L +K ++I  +  D  IR  + +++  ++ R+L   +    +A+P Y+     P  
Sbjct: 125 LEISLTDKTVNILDEGIDLGIRFGERLEA-GMVARQLTPDLEAALFASPEYVAKYGVPKQ 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H LI +       +     L      +     S + VN   ++      G GI 
Sbjct: 184 PEDLQHHRLIRYRFSASNQLAPL-LLEHKGEVLNIEMPSSIIVNDTNAMTDAASKGLGIG 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            L   IV +      LV +M+D   P   +Y  + +  +   +++   +F+  KA+  ++
Sbjct: 243 CLVTPIVSEQFKRGELVPLMKDYWHPFSGLYLFFVQNSQKARRVRVLVDFLLEKAKQLEY 302


>gi|262279544|ref|ZP_06057329.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259895|gb|EEY78628.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 300

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF +VA   S + AA  L  + S ISR I+ LE ++GI+ F R  R L
Sbjct: 1   MSRQFDHLADVEVFLIVAEKLSISAAAIYLSTTPSVISRTITRLEKKLGIQFFRRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   +      +  ++  +  +Q   ++ SGK++++     G   L   L++FLL
Sbjct: 61  SLTEAGQLYYEKMQHAFQLIDHAERVVQGEQLQISGKIKLSVPTTYGHYRLPPLLEKFLL 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDIQI++ + N+++D+  +  D AIR    + +SSL+ R L    +   A+P+YLK  
Sbjct: 121 QYPDIQIEISISNRNVDLIAEGFDLAIRQGH-LPNSSLVARPLELAPLQLVASPNYLKRV 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P S++EL+ H  I F       +  + +          P    L     L ++     
Sbjct: 180 GIPQSLEELNHHQCIAFELPSSGKITPWFFKDVDQEIQWTPTNRILVKEDILGVVSLAES 239

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI     +IV +      L  ++E     +      Y +    +   +A  NF+
Sbjct: 240 GLGICQSYSFIVNEKIRQGKLQPLLEAYAGHTRPFSLLYAQHKHMSSATRALINFL 295


>gi|148549538|ref|YP_001269640.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513596|gb|ABQ80456.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 302

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L  R  R L+LT 
Sbjct: 1   MDRLNAMRVFVTVIDLGSQSAAADYLQLSRPVVSRYLAELEDWVGTRLMQRTTRKLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       Q  +Q+    P G LRI+ +   GQ  L   +  ++  +PD
Sbjct: 61  AGQETLPRCRQLLELAGDLQAAVQQPEDAPRGALRISVSTSFGQAQLVDAVAAYVRRFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L + ++ +++  +  D AIR    +   SLI R+L        AAP YL     P 
Sbjct: 121 VKVELQMLDRTVNLVDERIDLAIRTSNDV-DPSLIARRLSVCRSVVCAAPAYLNERGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL  HN +T               A   + +  P    +  N  +++ +  + G+GI
Sbjct: 180 RVEELGLHNCLTHAYFGHSLWH----FAVAGQQVAVPVSGNISANEVMTLQRAALAGAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LP +   D      LVR++ +       +   Y         L++  +F+  + +D
Sbjct: 236 AMLPTFQAADAIRRGELVRLLPEAKPRELNLNAVYTSRKHMPATLRSMLDFLVQRFKD 293


>gi|237801279|ref|ZP_04589740.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024138|gb|EGI04195.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 303

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 132/298 (44%), Gaps = 7/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + +F  V RSGSF  AA  L +  +++SR++  LE ++G +L  R  R LTLT
Sbjct: 1   MVPDLNDIALFVQVVRSGSFAQAARHLGMPSNTVSRRVQELEVQLGTRLLQRSTRKLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +   ++    L      L     +PSG++RIA T D         + +FL  YP
Sbjct: 61  QAGEDFYGRCTDAVDGLMDAAEHLVSGREEPSGRVRIAATADFFDFFSMDWVADFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+  S  + R+L+        A+P Y+     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLLDSGYVGRQLIDEARDGMVASPAYIATHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+Q L  H  +    + P     +  L    R       S    N+  ++ +  + G 
Sbjct: 180 PDSLQSLQHHYCV--SAVHPGGASGWRLLGPDARMHDVQIASRFTANTAQALRKAALAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIALLP  +++    +  LV I+      S  ++  YP   +    + AF   +  K 
Sbjct: 238 GIALLPAPLIRSDLRDGLLVPILAQYQRTSHGLHVLYPSRQQLPLAVSAFIEMVMEKL 295


>gi|222084745|ref|YP_002543274.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722193|gb|ACM25349.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 309

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 133/297 (44%), Gaps = 5/297 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D  D L  F  VA   SF+ AA +L +S S++S+ IS LE  + + LF R  R ++L
Sbjct: 1   MRQDMLDGLVTFVTVAEEKSFSAAAVRLGVSPSAVSQSISKLEGRMRLALFNRTTRSVSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +         H L     EL E+  KP+G LRI          LQ  L++FL  Y
Sbjct: 61  TEAGLRYLERVVPAVHDLTAAAQELGEAVDKPAGLLRINVARSGYMIALQPILRDFLDTY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI++++ ++   +DI     D  +R    +Q   +  +    I  H  AAP YL     
Sbjct: 121 PDIELEVRIEGSLVDIVGQGFDAGVRFGDLVQRDMVTVKIGPAISAHIIAAPGYLGRYGI 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++L  HN I+F       +E +         I       L +N   ++ Q  + G 
Sbjct: 181 PRHPRDLLHHNCISFRHSSSGQIERWE-FEKDGEKIELAVNGRLILNDSAALTQAALDGI 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIA + +  +    D+  LVRI+ D       +   YP+  +   KL+A  +F+  +
Sbjct: 240 GIAYMINGYIDRFLDDGRLVRILSDWSPSLAGLALYYPDRRRVPAKLRALIDFLRQR 296


>gi|68342508|gb|AAY90131.1| putative transcriptional regulator [uncultured bacterium pCosCE1]
          Length = 309

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 4/296 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     L  F  VAR GSFT AA QL ++  ++S+ I  LET +G++LF R +R + L+
Sbjct: 1   MSSLLQLLPFFEAVARLGSFTQAANQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++  +    +++    +L+    +PSG LRI         L+  +L EF   YP
Sbjct: 61  DEGRLFYQRVAPAMGQIDVAAEDLRTLRGRPSGLLRITLPQLAASLLVIPHLAEFQARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ++L  D+   D+ +D  D  IR+   +Q   +             AAP YL     P
Sbjct: 121 EIQLELFTDDHFSDLVLDSFDAGIRMHAMLQKDMIAVPIDNGQKRVVIAAPGYLAQHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + Q L+ H+ + +        E + +       +       L  N    I    + G G
Sbjct: 181 QTPQALNDHDCLRYRFPGSGKFEPW-YFKQDGAQLMLEVGGSLIFNEDRLIKDAALAGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I       V     +  LV ++ D  + +   +  +P +     KL+ F +F+  K
Sbjct: 240 ITQRFIGTVHRELSSGQLVEVLADYGSDAPGFFLYFPASRHMPLKLRVFIDFMREK 295


>gi|88797688|ref|ZP_01113276.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
 gi|88779365|gb|EAR10552.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
          Length = 306

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 136/296 (45%), Gaps = 15/296 (5%)

Query: 1   MSF--DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           MSF  DW  +  F  V  +GSFT AA++L +S + +SRQ++ LE  +  +L YR  R + 
Sbjct: 1   MSFIPDWAGIAEFVSVVETGSFTAAAKRLKVSTAQVSRQVNQLEQRLATQLLYRSTRRVR 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           ++E G + +     +    ET + +LQ     P G+L +   I  G+  L   + +F + 
Sbjct: 61  VSELGQRYYHQCRLLMDGFETAENDLQALQATPRGRLNLTAPITYGEQFLMPQVNDFQVQ 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP++ + + L N  +DI     D AIRL + +  S L  RKL T  +    +P YL+ C 
Sbjct: 121 YPELTVNVELTNTQLDIVDAGFDLAIRLGR-LSDSRLRARKLATRQVRTCCSPGYLRRCG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVL 237
           EP ++ EL +HN +              W   V D          L+ NS  S++     
Sbjct: 180 EPHTLAELKRHNCLL--------GSVGQWRFRVQDEEKLVTVSGSLRCNSGRSLLDAASK 231

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GI  LP+  V D   +  LV ++      S  ++  YPE    +  +    +F+
Sbjct: 232 DIGIVQLPEEYVLDGLSDGTLVEVLSAYRPDSEGIWGVYPETRWVSPNVGLLLDFL 287


>gi|283836411|ref|ZP_06356152.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291067785|gb|EFE05894.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 313

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 138/289 (47%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE+ +G  L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILESTLGTTLLNRSARGVVLTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +    +    ++ +   +P+G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHAQAILAGYQHLVDDVTQLKTRPAGMIRIGCSFGFGRSYIAPAITELMHSYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID++ D  D  IR+   I     I   L        AAP YL+   EP+++QE
Sbjct: 129 FELYDRQIDLAQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPTYLQKYGEPITLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     +++  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGVWELDNGQEKKSVKVAGHLSSNSGEIVLQWALQGKGIMLR 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ V+    +  LVR++ D    S  ++  Y E L  + KL+    F+
Sbjct: 245 SEWDVQPFLASGELVRVLPDYAQ-SANIWAVYKEPLYRSVKLRVCVEFL 292


>gi|332873390|ref|ZP_08441344.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|332738453|gb|EGJ69326.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 300

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 146/300 (48%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT
Sbjct: 1   MKSTIEELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YP
Sbjct: 61  QEGQQFLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+I+L  +++ ID+     D A R  + +  SSL  + +   H++  A+P YL     P
Sbjct: 121 DIEIELNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCESHLYIVASPDYLALKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL++H+LI F    P  +  +      +    + +I   + +S  ++ Q  + G G
Sbjct: 180 TQPEELEQHDLIGFTR--PTYINSWPIKVGDEYFFAQSKI---KASSGETVRQLTIRGHG 234

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ +    +   L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|315499078|ref|YP_004087882.1| transcriptional regulator, lysr family [Asticcacaulis excentricus
           CB 48]
 gi|315417090|gb|ADU13731.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 309

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 146/299 (48%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D + VF  V  +G F  AAE+L L++S++ + I+ LE+ +G++LF R  R   LT
Sbjct: 1   MRDNLDGVAVFVEVVDAGGFARAAERLALTRSAVGKTIARLESRLGVRLFQRTTRTQNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +        +L+T +  L+    + SG+L+I+     G++ +Q  L +F   +P
Sbjct: 61  DEGHIFYERCVRAITELKTAEQMLESGRREVSGRLKISLPALFGRHCVQQVLLDFAAKHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L   +K +DI  D  D A+R  K   S+ L+ RKL++      A+P YLK    P
Sbjct: 121 SLELDLSFSDKVVDIIGDGYDLAVRNGKLGDSAGLMARKLLSQPKVVCASPAYLKAFGRP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             I  L  H  + +     +  + F WL    +   +       L+ +S  SI    VLG
Sbjct: 181 TDIPSLTGHEALLYI----RNGQIFPWLLNDGMGSTVQAEVKGRLRFDSQESITDAAVLG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIA LP ++VK      +L+ ++E   +     Y  +P+A     +L+A  + +  + 
Sbjct: 237 FGIAWLPYWLVKTQIARGDLISLLEPFASTPIDTYAVWPKATHLPLRLRAVIDTLAAEL 295


>gi|239814060|ref|YP_002942970.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800637|gb|ACS17704.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 350

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 133/294 (45%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D+LR+F  VA   SF+ AA+QL L+++ +S  +  LE  +G +L  R  R + LTE 
Sbjct: 1   MNTDELRIFSRVAELASFSRAADQLGLTRARVSVAVQQLEERLGTRLLQRTTRSVRLTED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++      +   + E      +  +   +G+LR+     + ++L+   L EFL  +P +
Sbjct: 61  GARFLDRCKDYLAEGEQLATMFRSHAGGLTGRLRVDLPNAIARDLVIPRLPEFLARHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +   ++ +D+  +  DC +R+   +  S L+ R L  + M   A+P YL+    P +
Sbjct: 121 EVGISTSDRRVDLVHEGFDCVLRVGM-LGDSELVARPLGALRMANAASPGYLRAHGTPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGI 241
           + +L +H ++ F   +      + +L   D      P  + + VN   +       G G+
Sbjct: 180 LDDLAQHQVVHFAQTLSSSDAGWEYLDPADGVYRTWPVAATVTVNGTDAYQAAARAGLGL 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P   ++ +     LV++M +       V   Y    +   ++ A  +++  
Sbjct: 240 IQAPFAGLEASLAAGALVQVMPEFSARPMPVSLLYANRRQLAPRVLAVMDWLTE 293


>gi|332529454|ref|ZP_08405413.1| transcriptional regulator, LysR family protein [Hylemonella
           gracilis ATCC 19624]
 gi|332041100|gb|EGI77467.1| transcriptional regulator, LysR family protein [Hylemonella
           gracilis ATCC 19624]
          Length = 317

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 135/291 (46%), Gaps = 6/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R    V  +GSFT AA+ L++  +++S+ +  LE  +G++L  R  R +T+T +G + 
Sbjct: 6   AMRALARVIEAGSFTRAADSLNMPIATVSKLVRELEKHLGVRLLQRTTRRVTVTPEGEEY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +   +E        +  KP G LR+       +++L   L +F+  YPDI+I L
Sbjct: 66  YAKSGRILRDIEDIDGAFNLARGKPRGHLRVDVGGSTARDVLIPILGDFMARYPDIRIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +K ID+  + ADC IR    ++SSSL+ R+L    +   A+P YLK    P    EL
Sbjct: 126 SVSDKSIDMVGENADCVIR-GGAMESSSLVARQLGEAVLITCASPGYLKQFGTPAYPDEL 184

Query: 187 DK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
              H L+++          F +    D+   +     + +N   + M  CV G G+    
Sbjct: 185 KNGHRLVSYVSSNTGRPVPFRFARNGDKSEIKVD-HIIGINESNAHMAACVAGLGVIQTF 243

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            Y       +  LV I+ +     +     YP+A   T +L+ F +++   
Sbjct: 244 GYAAATALRDGTLVEILPEWRPARYPFQIVYPQARHMTHRLRVFVDWLLEA 294


>gi|170702246|ref|ZP_02893148.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170132851|gb|EDT01277.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 313

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 123/299 (41%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 12  PLDLLDVGLFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 72  DGEVFMARAEALLSAADAARASVGHGRSEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPS 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  D  D AIRL   ++ S+L+ RKL         +P YL     P 
Sbjct: 132 VSLDLRLSDEIVDLVDDGYDVAIRLGA-LKDSTLVARKLAANRRVLCCSPAYLAEHGTPR 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +  GD             T   P+       L  ++  +I +  V G GI
Sbjct: 191 HPADLAQHECVILGDQRDWS------FVTPQGPLTVRVGGRLVASNGEAIREALVDGFGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     +  LV +++D        ++  YP       K  AF  F+     D
Sbjct: 245 AIKSTWDVGPLLADGTLVTVLDDYPFAHDVAIWAVYPSRAHVPLKTLAFIAFLAEHFGD 303


>gi|150376589|ref|YP_001313185.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150031136|gb|ABR63252.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 297

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 127/294 (43%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VAR  SFT AA  L  SQS++S  I  LE  +G++L  R  R +  TE G
Sbjct: 5   DMKDLLWFLEVAREQSFTKAAAALGTSQSTLSYTIKQLEARLGVRLLTRTTRSVATTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     L     KPSG +R+  +    Q  +   L   L  YPDI+
Sbjct: 65  ERLFQSLAPRFQQIEADLAALVAFREKPSGTVRLTLSDHALQTTVWPKLSRVLSDYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  DN   +I  +  D  +RL + +    +  R      + A A+P Y      P + 
Sbjct: 125 LELYSDNGMSNIVEERFDAGVRLGESVDKDMIAVRISPDWRLRAVASPEYFTKHGIPTTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I            ++W    D      R+   L  NS ++ ++  + G GIA
Sbjct: 185 QDLVGHVCINMRQATWGGF--YSWEFEKDGRELRVRVDGQLSFNSSITQVEAALEGYGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+ +V+++     L  +++D   P    +  YP   + +  +      +  +
Sbjct: 243 YVPENLVEEHLAVGRLRAVLDDWSQPFTGYHLYYPSRRQMSPAMTVIVEALRHR 296


>gi|229514467|ref|ZP_04403928.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229348447|gb|EEO13405.1| transcriptional regulator [Vibrio cholerae TMA 21]
          Length = 301

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 136/292 (46%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P
Sbjct: 125 DVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLAEHRCLT-GSVKRWSYQHKETKQTLD----VPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|261339009|ref|ZP_05966867.1| hypothetical protein ENTCAN_05214 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318840|gb|EFC57778.1| LysR-family transcriptional activator [Enterobacter cancerogenus
           ATCC 35316]
          Length = 299

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 10/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA +  L +SS+S++IS LE +VGI+L  R  R L+LT  G 
Sbjct: 5   LQDMALFALVAEMGSFTAAARKADLPKSSVSQRISQLEQQVGIRLLNRTTRRLSLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E+    E  +  +Q     PSG+LRI     +G  LL     EF L YPD+ +
Sbjct: 65  HYLVHCREMLAASERAEYAIQRLRDNPSGRLRITCPAGIGATLLAHMNAEFQLRYPDVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + +  +D+     D A+R  KP Q SSLI R +     +  A+P YL          
Sbjct: 125 DVSISDDVLDLVESGYDVALRTGKP-QDSSLIGRMIGHCPRYMLASPGYLARREPLTHPS 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  IT      +   ++      +     P  + +  ++ +   +  V G+GI +L
Sbjct: 184 QLVGHRCITH-----RAWSEWVLQRASEDYRYLPDNAHM-TDNLVYARECAVAGAGITML 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P ++++D      LV+++ +       ++  YP    N+  L ++ +F
Sbjct: 238 PAFLLEDKIETGALVKVLPEWNVEGNDLWLAYPSRKLNSPALMSYIDF 285


>gi|325925597|ref|ZP_08186982.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325543997|gb|EGD15395.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 299

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+VF  VAR GSFT AA QL LSQS++S  +  LET +GI+L  R  R + +TE G
Sbjct: 5   NLNDLQVFVTVAREGSFTRAAAQLGLSQSALSHTVRALETRLGIRLLTRTTRSVAMTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L    +    +++     L +   KP+G +RI T        +   L + L  YPD++
Sbjct: 65  ARLFETVAPRLEEIDAQLSALTDFRDKPAGTIRITTAGHAADAYIWPALSKVLPDYPDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D    DI  +  D  IRL   +    +         M   A P Y  +   P   
Sbjct: 125 VELTVDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPMQRMAVVAVPGYFVHHTIPAVP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN I         +  ++      R +          N   +I++  + G G+A 
Sbjct: 185 ADLAQHNCIGLRLPTHGGLLPWD-FDKDGREVKVRVDGQWTFNGSSAILRAALAGGGLAF 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+ +V ++     L R++ED   P    Y  YP   +++  LK   + +
Sbjct: 244 LPETMVLEHVAAGRLRRVLEDWCEPFAGYYAYYPSRRQSSSALKVVIDAL 293


>gi|323493354|ref|ZP_08098477.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio brasiliensis LMG 20546]
 gi|323312440|gb|EGA65581.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio brasiliensis LMG 20546]
          Length = 291

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 142/293 (48%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEESLNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +   S + ++L     E+ +     +GK+RI    +L + ++      F+  YPDI
Sbjct: 61  GERFYAECSPLLNRLTLAAEEITDECRGAAGKIRITAPSNLTKRMMMPMFNAFMSQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L   N+   +     D   R+  P + SSLI RK+ ++     A+P YLK    P  
Sbjct: 121 NIELTTSNQADQLDPTEWDVIFRVG-PQRDSSLIARKISSVADILVASPEYLKAHPAPTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL +H+L+    L+   + + +    V+   G       Q N+   +   C  G GI 
Sbjct: 180 AEELHQHSLLKGAPLLKWQLSNNSGETVVNNDKG-----RFQANTLNVVRSACSEGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD +++   ++ +LVR+++D       +Y  Y        K++ F +F+  
Sbjct: 235 LMPDVMLREYIEDGSLVRVLQDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 287


>gi|260778146|ref|ZP_05887039.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606159|gb|EEX32444.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 301

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 145/294 (49%), Gaps = 12/294 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LTE
Sbjct: 4   QINLADIRSFVLIAQLGNFTKAAEALDVSRSHVSRQISSLENQMGVTLLIRTTRTLKLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G   ++   +  H ++   +   +   K  G+++I      LG++L+     EF+ ++P
Sbjct: 64  AGKAFYQQCEKALHNIDQALLAAVDDVEKVQGEIKINCVGGYLGEDLIAQIATEFMHVHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I L   +  +D+  D  D A R+ K ++ S  + RKL+ I M   A+P YLK   +P
Sbjct: 124 DVSINLDFSSHRVDLIEDDFDIAFRMGK-LEDSGFVARKLLDIKMGTLASPSYLKRYGQP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
              +EL +H+ +T        ++ +++ +  D    +  +   +Q  +   +++  + G+
Sbjct: 183 NHPKELTQHHCLT------GSVKRWSFESKADPQHYDVLVNGHMQCKNGRVLVKGALNGN 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P    ++      LV + +    PS      Y +      +L+ F +F+
Sbjct: 237 GIIRVPMIYCEEELAQGELVEVFDHWGIPSVDFSAIYHKDRFQPKRLREFISFV 290


>gi|221200934|ref|ZP_03573975.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221207130|ref|ZP_03580141.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221173204|gb|EEE05640.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221179506|gb|EEE11912.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 304

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 136/296 (45%), Gaps = 11/296 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F  AAE + ++   +SR I+ LE  + I+LF R  R + LTE+G + +
Sbjct: 12  ISVFAAVVDAGTFVGAAEVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVALTEEGRRFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE         +    GKLRI     + + +L   L  F+  +P+++I+ I
Sbjct: 72  EQVMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRTVLGQPLDAFMDTHPELEIEFI 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
             +   D+ MD  D A+R  +P ++S+LI RKL+   +   AAP Y+     P   ++L 
Sbjct: 132 ARDSLGDLVMDGFDLAVRFGEP-KASTLIARKLLDSRIVTVAAPSYVARWGRPAKPEDLE 190

Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
              H  + F +  P+  + F W     R          L VN   +++  C+ GSGIA +
Sbjct: 191 GRHHRCLEFRN--PETGKPFQWEFHRKRKRIVVNTQGRLTVNDPGALLNACLAGSGIAQM 248

Query: 245 ----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                + ++ D   L+ +  + +   + +Y  Y        K +AF +F+    R+
Sbjct: 249 LLLGAEPLIAD-GRLINLFPEWVDERYPLYVYYASRHHVPAKTRAFLDFVVELMRN 303


>gi|167614909|ref|ZP_02383544.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 297

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 128/296 (43%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE +  ++L  R  R  T+TE G
Sbjct: 3   DLNDLYYFVKVVEHGGFTQAGRALGVPKSTLSRRIAALEAQYDVRLLQRTTRHFTVTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E  +  ++    +P G +R++    L +  + G +  F+ ++P +Q
Sbjct: 63  REFYDRCLGVLVEAEAAREVIERKHAEPQGIVRLSCPTALLEYRVSGLVARFMAIHPKLQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAPH L     P S
Sbjct: 123 VHLEATNRRVDLLSEGIDLALRVRFPPLEDSGLVMRVLGDSPQRLVAAPHLLGGRDLPTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     + +G   P     +  +                 +   ++    + G GIA
Sbjct: 183 PDELAGVPSVDWG---PPRHHLWQLVGPQGVEAQLRHHPRFITDDMHALRDAALHGVGIA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP  +V+D   +  LV ++   +     ++  +P       +++   +F+    +
Sbjct: 240 QLPCMVVEDDLRDGTLVDVLPGWVPKGGVIHAVFPSRRGLLPRVRLLIDFLAAHIQ 295


>gi|186474178|ref|YP_001861520.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196510|gb|ACC74474.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 304

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 132/297 (44%), Gaps = 10/297 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  V  +GS + AA ++ L  S +S++++ LE  VG++L  R  R  TLTE+G+  
Sbjct: 11  ALLAFSRVVSAGSLSAAAREMDLPLSVVSKRLAHLEKSVGVRLIQRTTRRQTLTEEGALF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H     +  ++E  +  L +   + SG LR+     LG+  +   + +F  L+P + +QL
Sbjct: 71  HARVVRILDEIEQAEELLSQRRQEVSGLLRVTAPGQLGRQKIAPLIADFQRLHPQLTVQL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+     D AIR    +  SSLI R L        A+P YLK    P    +L
Sbjct: 131 DLTDAVVDLVEGGLDLAIRFGS-LADSSLIARALAPNFRVLCASPAYLKQHGTPKHPHDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I  GD          W    D  +     + +  N   +   + +  +GIA+   
Sbjct: 190 TTHRCILIGD-----QRRGEWRFEGDESVAVRVDAAIVTNDGEAAHLFALADAGIAVKSI 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDWKF 299
           + V D+     L R++      +  ++  YP +     +++ F +++  +  + W++
Sbjct: 245 WDVGDDILAGKLRRVLPQHSMSAAPLHAIYPHSQHLAPRVRVFVDYLRERLLQAWRW 301


>gi|332284460|ref|YP_004416371.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428413|gb|AEC19747.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 306

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 12/292 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F V+A S     AA  L ++  ++S++++ +E  +G+ L  R  R + LT +G   
Sbjct: 9   ELAFFSVLASSSGLGAAARSLGVTTPAVSKRLAQMEARLGVALVIRTTRRMRLTPEGEIY 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +++  +  L  S   P G LR+  +   G++ +   +  F+L +PD+Q+QL
Sbjct: 69  LDHARRILAEIDEMEQLLVGSESAPKGMLRVNASPGFGRSYIAPLISRFMLKHPDMQVQL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L       S D  D  IR   P     +I R+L +      AAP YL     P + ++L
Sbjct: 129 QLSVDPPAYSSDAFDVCIRFGGP-PDGRIIARRLASNRRMLCAAPAYLARHGAPAAPKDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCVLGSGI 241
           ++H  I+             W  T +R              L  N   + + + + G GI
Sbjct: 188 ERHQCISIEQ---GGEAYGVWRLTTERDGSRKTEVLRVQGPLSTNDGEAAVSWALDGHGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  ++ +     +  LV+++ D  TP   +Y  Y +  K + +++ F +F+
Sbjct: 245 LMRAEWDIARYLSSGRLVQVLPDYQTPDADIYATYLQKHKLSARVRVFVDFV 296


>gi|307730092|ref|YP_003907316.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584627|gb|ADN58025.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 334

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFLRVVEAGSFTAAAQSLNSTTGAMSRALSELEAHLRTRLLNRSTRRLALTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++T + E   +  +PSG LR+ +   +GQ+ +   +  +   YP+
Sbjct: 61  AGERYLKRCRQILADVDTAEEEASCAHERPSGALRMHSFASIGQHYVLPAISRYRAQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+    AD +I     +  S L+   L T      A+P Y++    P 
Sbjct: 121 VTVELTLSQRMPDLFEGSADVSIVGAATLPDSDLVSLPLGTTFSILCASPAYVRAHGTPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  +          E    L   +          +QVN   S++     G GI
Sbjct: 181 TPADLAHHECLILHTPAFPPREWV--LDGPNGSETMAVDGPVQVNIAESLIAAIREGMGI 238

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++P Y       +  LVR++        TVY  YP       K + +  F+
Sbjct: 239 GMVPLYAAIAGLRDGTLVRVLPAFTLQKMTVYALYPSRKFVDAKTRTWVEFL 290


>gi|300717373|ref|YP_003742176.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299063209|emb|CAX60329.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 303

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 130/293 (44%), Gaps = 7/293 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A+ G FT AAE+L L++S++ + +  LE  +G+KLF R  R L+LT  G +  
Sbjct: 10  ITAFVTTAQQGGFTAAAERLGLTKSAVGKSVGRLEARLGLKLFLRSTRRLSLTPDGERFL 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE  + EL     +PSG+LR+      G+  +   L +    YP++ + + 
Sbjct: 70  ISCQNAMDILEQAEAELTSHICQPSGRLRVDLPAAFGRQRILPILLQITRRYPELALTVT 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              + +D+  +  D  IR+ +   SS L+ R+L T  +   A+P YL    EP+S +EL 
Sbjct: 130 FSERFVDLIEEGIDLVIRIGELADSSGLVARRLTTQKLVICASPDYLLYGGEPVSSEELS 189

Query: 188 KHNL-ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H   + F    P           + R    P     +     +++   + G G++ LP 
Sbjct: 190 QHQCVVGFRRNQPISWLLKENDGQISRYTPPP---THEFADGDAMLSATLAGCGLSQLPL 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++V    ++  L  ++         +   +P+  +   K++   + +   A D
Sbjct: 247 WLVGKYLESGELKEVLVGHSGGEMPISALWPKNRQLLPKIRYVVDTLIKAAED 299


>gi|167565055|ref|ZP_02357971.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 323

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTLSQTMLSRLLPEFLH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++Q+ + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L+ 
Sbjct: 121 RYPEVRVQIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPGLLQQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P+   +L + +  T           FN +A             L     ++I +  +
Sbjct: 181 NAPPIVPADLSRFD--TLDTPSGDGRHVFNLIAPDGTRHAHEHEPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|254237602|ref|ZP_04930925.1| hypothetical protein PACG_03684 [Pseudomonas aeruginosa C3719]
 gi|126169533|gb|EAZ55044.1| hypothetical protein PACG_03684 [Pseudomonas aeruginosa C3719]
          Length = 312

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G
Sbjct: 3   TLQGMRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD+ 
Sbjct: 63  ERYLERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+
Sbjct: 123 IELTLSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L++H  +   D  P   E + +          P+ +   VN    + Q      GIAL
Sbjct: 183 DDLERHVCLRLQD--PAYPEGWIFADEKGERTVSPQ-NTFMVNVAEVMAQAAKADLGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+      N  L+R++        T+Y  YP       K++ + + +  + 
Sbjct: 240 LPSYVAAAALRNGELLRVLPGHAMHQRTIYALYPSRRYLDAKIRTWVDLLQQEL 293


>gi|118589549|ref|ZP_01546954.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118437635|gb|EAV44271.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 290

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 144/290 (49%), Gaps = 10/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   G F+HAA QL ++QS++S+ IS LET +G +LF R  R L LT +G   +
Sbjct: 1   MEVFVQVVELGGFSHAARQLAMTQSAVSKLISRLETRLGARLFNRSTRRLDLTAEGCVFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   ++  + +      +P G++R+ T+     ++L+  L  FL  YPDI ++++
Sbjct: 61  ERAREILSSIDEAERQ-AGLGEQPVGRIRLNTSASYATHILERVLPLFLEQYPDISLEIV 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  ID+  +  D  +R   P++ SSL+ RKL    M   A+P YL+   EP  + +L 
Sbjct: 120 LTDALIDLLAERTDVVVRAG-PLKDSSLVARKLGETPMLIVASPDYLRRAGEPSCVADLA 178

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I F    P+ ++ + +L   D PI       +Q +   +I +  + G G+A L  +
Sbjct: 179 GHRKIGF--TYPREVDTWRFLRN-DEPIAVCPPGRVQASDGEAIRRLAIHGLGLARLAAF 235

Query: 248 IVKDN---PNLVRIMED-VITPSFTVYFCYP-EALKNTGKLKAFRNFIFL 292
            V+D+     L  ++E+     +   +  Y  +      +++   NF+  
Sbjct: 236 TVRDDIAAGRLKPVLEECYADDNEAFHAVYTGQGGPLPARVRVLLNFLAE 285


>gi|283479182|emb|CAY75098.1| Uncharacterized HTH-type transcriptional regulator yhjC [Erwinia
           pyrifoliae DSM 12163]
          Length = 301

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 143/305 (46%), Gaps = 19/305 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V    SFT AA+ L + + ++S+ I  LE ++G+KL +R  R L++T +G 
Sbjct: 6   LELMGIFVHVVDLHSFTKAADTLQMHRPAVSKSIQQLEDDLGVKLLHRTTRSLSVTAEGD 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++++    + + +      +   +  P G+LRI   + L   +L  +L EF  LYP I+I
Sbjct: 66  EIYQRAKTLLNDVNEMMASV-SPTQPPRGRLRIDAPLALTHAILIPSLGEFQALYPQIEI 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++  D+  +  DC IRL + +  SS I R++  + M   AAP YL     P++  
Sbjct: 125 VLTASDRLTDLVSEGIDCVIRLGE-LVDSSFISRRVGNVRMTTCAAPSYLDKYGTPVTPD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI-- 241
           +L+ H  I F        E   W   +D  +   R    + VN+   ++   + G G+  
Sbjct: 184 DLEHHKAIHF--FSEHSREVMEWKYVMDGEVISRRPGSNMLVNNSDVLLSCGLAGLGMIH 241

Query: 242 ----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKA 294
               AL P      +  L  ++ D  T +  V   +P+      K++ F ++   IF  A
Sbjct: 242 ALHTALEPHI---QSGRLREVLTDYATITKPVSILFPDRRYLPPKVRVFIDWFSDIF--A 296

Query: 295 RDWKF 299
           R+++ 
Sbjct: 297 RNYQL 301


>gi|104779958|ref|YP_606456.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95108945|emb|CAK13641.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 298

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 136/301 (45%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+VF  V   GS + AAEQ+  + S++SR +S LE ++G  L  R  R + LT
Sbjct: 1   MKTRSEELQVFVAVIDCGSISAAAEQIGQTPSAVSRTLSRLEDKLGTTLVNRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++  +++  +  L      PSG+LRI        + +   + EF   YP
Sbjct: 61  EEGRFFLERARQILEQIDDMEERLSMHHQTPSGRLRINAAAPFMLHAILPWIGEFRQQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D+  ID+     D AIR+ + +  SSL  R L    +   A+P YL     P
Sbjct: 121 GIELELNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARSLGCSPVQVLASPEYLARNGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++LD H L+ F  L           A  DR    P+   L  +S  ++ Q  + G G
Sbjct: 180 QTVEDLDDHCLLGFSTLESLNQWPLRH-AQGDRWAIRPQ---LLASSGETLRQLAIAGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L  ++  ++     L  ++ +        ++  Y    +   +++ F +FI  K   
Sbjct: 236 IVSLSHFMTHEDIRSGRLQVVLGEHNNGYRQPIHAVYYRNTQLALRIQCFLDFIQKKLAA 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|13471870|ref|NP_103437.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022614|dbj|BAB49223.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 297

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 134/300 (44%), Gaps = 13/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R+F  V    SFT AA  L L +S+ +  I  LE  +G +L  R  R +  T+
Sbjct: 1   MDRLDTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +  ++E  +   + +  +P G LRI  +  L +  L   L EFL  Y  
Sbjct: 61  DGEAYYRRCLPILAEIEDAEAAFRNA--EPFGLLRIDASTLLTRTFLLPRLPEFLARYSR 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +Q+   ++ +D+  +  DC IR+ +P   S +I R+L  I     A+P YL     P 
Sbjct: 119 IDLQIGQSDRLVDLVREGVDCVIRVGEP-PDSGMIMRRLGMIREMTCASPAYLSRHGTPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S   LD H  + F  +  +  E   +  TV+    E R+   +  N+  +      LG G
Sbjct: 178 SPDALDGHQAVGF--VSSRTGEVLPFEFTVNGKTREIRLPGRVAANNSDTAADLARLGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKA 294
           +   P Y  + +     LV ++ D       +   YP+  + + +L+ F ++   IF +A
Sbjct: 236 LIQAPRYRFEKDLAQGMLVEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWAARIFAEA 295


>gi|126456200|ref|YP_001074629.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167848556|ref|ZP_02474064.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167913816|ref|ZP_02500907.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167921727|ref|ZP_02508818.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|242313852|ref|ZP_04812869.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|126229968|gb|ABN93381.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|242137091|gb|EES23494.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 303

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 133/295 (45%), Gaps = 12/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F VVA +G F+ AA QL  + SS++R +  LE  +G+ L  R  R +TLT+ G+  
Sbjct: 6   ALQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L      + ++  +P G LR++  +   + +L  +L  FL  YP + + L
Sbjct: 66  LEQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +  +D++ D  D A+R+  P +   L+ R L        A+  YL     P +  +L
Sbjct: 126 AVSDAYLDLATDRIDVAVRIGAPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPAAPGDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  + F    P      +W  + D    +  +   L  NS   + +  + G G+AL+P
Sbjct: 186 AAHRCLRF----PYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALVP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLK 293
            ++V D+     L+ + E            VY  Y    +++ K++ F  F+  +
Sbjct: 242 MWLVHDDIVAGRLLPLFESWCVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFLAQR 296


>gi|254476489|ref|ZP_05089875.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214030732|gb|EEB71567.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 304

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 138/293 (47%), Gaps = 7/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LR+F   A   + T A   L L+ +  S +++ LE E+G +L +R  R ++++++
Sbjct: 1   MDTDSLRLFVAAAERLNITAAGRDLGLAPAMASNRLAKLERELGTELLHRTTRKISISQE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+       EV  ++E  +  +   +++PSG LR A      Q  +   L  F  +YPDI
Sbjct: 61  GAAFLPYAREVLAQVEAGRAAVGAGALRPSGVLRFAAPSSFAQLHIIPLLPNFQTIYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +   D+     D A+R   P++ SSL+ RKL        A+P YL++   P++
Sbjct: 121 TIDLRLSDTRQDVIEGSFDLALR-SAPLEDSSLMGRKLADDTRILCASPAYLEHSGRPMT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L+ H  +++    P+ +   +    V  P      + L  +   S     + G GI+
Sbjct: 180 PDDLEAHRFLSWSSTTPRQIIHADGQTAVLDPTKMMCRTIL--DDGTSQRLATLAGMGIS 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRNFIF 291
           +   + V  +     LVR++ D      +V +  YP++   T K++ F +F+ 
Sbjct: 238 VNSLWSVAQDIEAGRLVRVLPDWRLHDQSVLWLIYPKSNVLTPKVRCFMDFLI 290


>gi|116255778|ref|YP_771611.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260426|emb|CAK03530.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 294

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 122/289 (42%), Gaps = 8/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GSF  AAE   +S + +++ I  +ET +G KL +R  R   LTE G   +
Sbjct: 7   MAMFVRVIDNGSFAAAAEIAQVSPAMVAKHIKTIETRLGAKLIHRTTRRHQLTEVGQLYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++   +    E    P G+LR+   +  G  +L   L ++   YPD+ I+L 
Sbjct: 67  ERCKRALSEVALAEASASELQSAPRGRLRLVAPVSFGTQVLVPTLIDYQNAYPDVSIELS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN   D+  +  +  I +  P+  SSL+ R L        A+P YL     P S + L 
Sbjct: 127 LDNNVHDLVGEGFELGIHIG-PLSDSSLVARPLTPYRRILAASPDYLARHGRPASPEALA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            H  +         M D   L      + +  IS     N   ++    + G+GIAL P+
Sbjct: 186 NHLCLGHSY---WRMRDRWHLVGPGGEMRDVLISGKFSTNQGAALRVAALSGAGIALQPE 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++  +     L +++ +       ++  Y    + T  L+   +F+  
Sbjct: 243 LLLAADIAEGRLEQVLPEWSYKPVPMHLIYAPNRRPTAMLRTVIDFLVE 291


>gi|296101170|ref|YP_003611316.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055629|gb|ADF60367.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 299

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 136/288 (47%), Gaps = 10/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA++  L +SS+S++IS LE +VGI+L  R  R L LT  G 
Sbjct: 5   LQDMALFALVAEMGSFTAAAQKADLPKSSVSQRISQLEQQVGIRLLNRTTRRLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E+    E  +  +Q     PSG+LRI     +G  LL     EF L YPD+ +
Sbjct: 65  HYLVHCREMLAASERAEYAIQRLRENPSGRLRITCPAGIGATLLAHLNAEFQLRYPDVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + +  +D+     D A+R  KP Q SSLI R +     +  A+P YL         +
Sbjct: 125 DVSISDDVLDLVESGFDVALRTGKP-QDSSLIGRMIGHCPRYMLASPEYLARREPLHHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  IT      K   ++   +  +     P  + +  ++ +   +  V G+GI LL
Sbjct: 184 QLVDHRCITH-----KAWSEWLLQSESEDYRYLPDNAHM-TDNLVYARECAVAGAGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P ++++D      LV+++ +       ++  YP    N+  L ++ +F
Sbjct: 238 PAFLLEDKIEKGALVQVLPEWNVEGNDLWLAYPSRKLNSPALMSYIDF 285


>gi|283836387|ref|ZP_06356128.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291067760|gb|EFE05869.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 322

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 135/289 (46%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S +S++I+ LE  + ++LF+R++R + LT +G  
Sbjct: 21  EDLFVFITVARNGGFARAALELGLSPSYVSKRIAILEKCLNVRLFFRNSRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   GQ  +   L  F+L YPDI ++
Sbjct: 81  ALEGAMQVVSEMDGFVSRLDNQRGALTGNITINCSFGFGQKYVAEALSAFMLAYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I     I R+L T      A+P YL     P S+  
Sbjct: 141 LTLTDREVDLVEEGVDVEIRVGDDIN-ELYIARQLATNRRILCASPEYLARHGTPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   K     NWL T  R     R++     NS   ++ + + G GI L 
Sbjct: 200 LVQHDCLMIQE---KNSAFGNWLLTDGRQQTHCRLNRFHSSNSGSVVLIWALKGHGITLR 256

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V    +   LV ++      +  ++  Y     ++ ++K   +F+
Sbjct: 257 SVWDVAQYIERGELVHVLPQWYQEA-NIWAVYTRRSSSSDRIKTCIDFL 304


>gi|83716184|ref|YP_438445.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650009|gb|ABC34073.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 302

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 127/296 (42%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE +  ++L  R  R  T+TE G
Sbjct: 8   DLNDLYYFVKVVEHGGFTQAGRALGVPKSTLSRRIAALEAQYDVRLLQRTTRHFTVTETG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E  +  ++    +P G + ++    L +  + G +  F+ ++P +Q
Sbjct: 68  REFYDRCLGVLVEAEAAREVIERKHAEPQGIVSLSCPTALLEYRVSGLVARFMAIHPKVQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAPH L     P S
Sbjct: 128 VHLEATNRRVDLLSEGIDLALRVRFPPLEDSGLVMRVLGDSPQRLVAAPHLLGGRDLPTS 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     + +G   P     +  +                 +   ++    + G GIA
Sbjct: 188 PDELAGVPSVDWG---PPRHHLWQLVGPQGVEAQLRHHPRFITDDMHALRDAALHGVGIA 244

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP  +V+D   +  LV ++   +     ++  +P       +++   +F+    +
Sbjct: 245 QLPCMVVEDDLRDGTLVDVLPGWVPKGGVIHAVFPSRRGLLPRVRLLIDFLAAHIQ 300


>gi|270263872|ref|ZP_06192140.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042065|gb|EFA15161.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 302

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 132/291 (45%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA +  L +SS+S++IS LE  +G++L  R  R L LT  G 
Sbjct: 5   LQDMALFALVAECGSFTAAANRAGLPKSSVSQRISQLEQTLGLRLLNRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + LQ     PSG+LRI+T   LG  L+     +F   YPD+ +
Sbjct: 65  RYLVHCQEMLSAAERADLALQRLRDNPSGRLRISTPAGLGATLVARLAADFQRQYPDVTL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  +D+  +  D A R  KP Q SSLI R+L     +  AAP YL      L  Q
Sbjct: 125 EVSVSDAMVDLVQEGYDAAFRTGKP-QDSSLIGRRLGHAPRYLLAAPAYLAQFPPLLHPQ 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I         +   +       P+          ++ L   +  + G+GI LL
Sbjct: 184 QLQQHRCIAHRAWPAWSLRRGDEYYRWQLPMLH------ITDNLLYARECAISGAGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P ++ ++      LV ++ +       +Y  YP    N+  L  F + +  
Sbjct: 238 PAFLSREVVAQKQLVEVLPEWRAEGNELYLVYPSRKLNSPALACFIDVVLQ 288


>gi|115351768|ref|YP_773607.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115281756|gb|ABI87273.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 313

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 123/299 (41%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 12  PLDLLDVGLFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 72  DGEVFMARAEALLSAADAARASVGHGRSEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPS 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  D  D AIRL   ++ S+L+ RKL         +P YL     P 
Sbjct: 132 VSLDLRLSDEIVDLVDDGYDVAIRLGA-LKDSTLVARKLAANRRVLCCSPAYLAEHGTPR 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +  GD             T   P+       L  ++  +I +  V G GI
Sbjct: 191 HPADLAQHECVILGDQRDWS------FVTPQGPLTVRVGGRLVASNGEAIREALVDGFGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     +  LV +++D        ++  YP       K  AF  F+     D
Sbjct: 245 AIKSTWDVGPLLADGTLVTVLDDYPFAQDVAIWAVYPSRAHVPLKTLAFIAFLAEHFGD 303


>gi|296136394|ref|YP_003643636.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
 gi|295796516|gb|ADG31306.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
          Length = 295

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 131/298 (43%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R    +A  GS T AA  L  S  ++ R ++ LE  +GI+LF R  R L+LTE
Sbjct: 1   MDKLKAMRTVVNIADEGSLTAAATALGSSPPAVVRTLAALEAHLGIRLFNRTTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        ++   +E  +  L   +++PSG+L I   +  GQ  +   +  F+  Y  
Sbjct: 61  EGQHYVESCRQLLAAIEDAESALTADAIEPSGQLTITAPVLYGQMYVAPAVTRFVQNYDK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L+L ++ +++  ++ D  IR+   ++ SSLI + L ++     A+P YL     P 
Sbjct: 121 VRVNLLLLDRMVNLLEEHIDVGIRIGA-LEDSSLIAQPLCSVRRIVVASPDYLARHGLPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL K N + F +               D+P   P    L+ N     ++ C+ G G 
Sbjct: 180 HPMELLKVNCVRFSNGAGPWWT----FQENDKPFTVPVTGNLKFNYVTPALEACLAGLGF 235

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +   Y V +      L  ++E    P   +   YP A     ++K F  +I  +  +
Sbjct: 236 GMFFSYQVSNQLAHNHLQVVLEPFELPQRPISVVYPHARLLPARIKFFIEWIKQELAE 293


>gi|222081049|ref|YP_002540412.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725728|gb|ACM28817.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 289

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 134/298 (44%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M F  + + +F  V ++ SF  AAE   +  S++SR+IS LE  +G++L +R  R + LT
Sbjct: 1   MEF-LNDMALFVEVVKAKSFRGAAEVTSVPNSTLSRRISALEKAIGLRLLHRTTRRIELT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +  +      +L E   +PSG LR++  +D     L   + EF  LYP
Sbjct: 60  EAGLIYFERCKRIVDEARLAHEQLGEILAQPSGLLRVSLPVDFANTYLAPLIAEFADLYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I  +  L  + +D+  +  D AIR+ +P + S +I R L  +  H +A+P YL+   EP
Sbjct: 120 GINFEFDLTPRRVDLVSEPFDVAIRMGEP-EPSHMIARPLARLSPHLFASPRYLELNGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  +    L  K     N   T +  IG       ++NS   I +   L  G
Sbjct: 179 KKPSDLLNHQCLCM--LKTKVWTLSNGTDTDEATIG----GRFRLNSIGMIRRLASLDMG 232

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA+LPD IV D      L R++         VY    E      K + F  F+  + +
Sbjct: 233 IAMLPDEIVSDELASNRLRRVLPGWCGAPTPVYAIT-ETRLLPAKTQRFIEFLKERLK 289


>gi|239820269|ref|YP_002947454.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805122|gb|ACS22188.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 308

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D L+ F  V  +GSFT AA+ LH+S++++++ +  LE  + ++LF R  R + +T 
Sbjct: 1   MDRFDALQAFARVVEAGSFTKAAQTLHMSKTTVTQLVQQLEARLRVRLFNRTTRQVRVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   LE     L  +S  P G+LR+       + +L   L  F   +P+
Sbjct: 61  EGAAYYDRVVRLLADLEDADASLLGASASPRGRLRVDVPTPFARMILVPALPAFHARHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ++L + ++ +D+  D  DC +R    +  SSL  R++  + +  +AAP YL+    P 
Sbjct: 121 IQLELGVSDRMVDLIGDNVDCVLR-GGELTDSSLTARRVGELRLGVFAAPCYLERAGTPA 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              EL+   H ++ +       +         +    + R   + V+   + +   V G 
Sbjct: 180 HPNELEGTHHRIVGYLSTRSGKVAALRMQRGAEHIELQGR-HVVAVDDGNAYLAAGVAGM 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+   +     LV + E     +  +Y  +P     + KL+ F  +I  
Sbjct: 239 GVLWLPHYMAAPHVAQGELVPLFEGWHFGAMPMYVMFPPNRHASAKLRVFIEWIDE 294


>gi|114562097|ref|YP_749610.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333390|gb|ABI70772.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 307

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R F  VA++GSFT AA  LHL +SSIS  +  LE  +G +LF R  R +TLT  G+
Sbjct: 4   FEAMRRFVHVAQTGSFTQAAAALHLPKSSISTAVESLEQLLGTRLFQRSTRRVTLTHDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++ H ++  + + Q  +    G +++          +   L E+   YP + +
Sbjct: 64  IYLAQCRQILHDIDALESQFQHENDSVRGVIKVDMPSRFANKTVLPRLSEWCERYPHVNV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +  ID      DC IR+      S LI R L    +    +P Y++    P ++ 
Sbjct: 124 VISSTDYHIDPIKSGVDCLIRVGNQGN-SLLIARPLTQYRIINCISPTYIQRYGTPSTLA 182

Query: 185 ELDKHNLITFGDLIPKCM------EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +L  H +I +   +           +F+++    +       S + V +  +    C+ G
Sbjct: 183 DLQHHRMIGYVPTVNHSASIDYNSAEFDYVEQ-GQNCQHTVPSVISVTNSDAYTSACLAG 241

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA +P   V D      L+RI+         V   YP   +   +L  F +++
Sbjct: 242 LGIAQIPQMGVTDYLNTGRLIRILHQYEAAPMPVSILYPSRSQLPKRLSLFMDWL 296


>gi|332305867|ref|YP_004433718.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173196|gb|AEE22450.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 302

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 135/298 (45%), Gaps = 6/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +    F  V  +  FTHAAE ++  +S ISR I  LE  + ++L  R  R   +TE 
Sbjct: 1   MDMNDYYYFVKVVENKGFTHAAEMINSPKSKISRHIKKLEERLDMRLIQRTTRHFVVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +R   +V +++E  +  +++     SGK+ I+ ++ +  + +   +  FL  YPDI
Sbjct: 61  GWEFYRHAKKVVNEVELAENIVKKRRGTLSGKVNISCSLGVSNHFMPSLISAFLKQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I+  + N  +DI     D  IR  +  +  SSLIQ+ L  +    +A+P +L      L
Sbjct: 121 EIRQQVSNDYVDIISKGLDMVIRGHEKNLPDSSLIQKHLAQVEWCLFASPAFLTQTMPIL 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L     + FG         +N           P +     +   ++   C+ G G+
Sbjct: 181 APNDLQGIKALGFG--WKNDSWTWNLTRYDGEKAEVPHLPIFSSDDMSALKTACIDGLGV 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP Y+ K   D+  LVR++    + S  +    P       +++ F +F+ + A++
Sbjct: 239 VSLPGYVCKKEVDDGQLVRVLPQWHSRSAALSIIIPSRKGVLAEVRTFIDFLQINAQE 296


>gi|319638889|ref|ZP_07993647.1| LysR-family transcriptional regulator [Neisseria mucosa C102]
 gi|317399793|gb|EFV80456.1| LysR-family transcriptional regulator [Neisseria mucosa C102]
          Length = 296

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 139/289 (48%), Gaps = 14/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AA+QL +S +  S+ +S LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAADQLDISTAMASKHVSHLENTIQAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +      +   L E+   YP + + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGGNMSTWLAEYRQRYPKVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ ID+  +  D A+R+ K   S SLI + L  I     AAP YL     P + + + 
Sbjct: 127 LDNRHIDLIAEGFDLALRVSK-TPSPSLIVKPLAKIEFVLLAAPDYLARHGTPDTPEAVM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  I     +P      NW  T  R  GE  I      ++ ++ L I +    G+GI  
Sbjct: 186 RHQAI-----LPSYTSQQNWEIT-HRQTGEKAILHLSPVIRSDNTLMIRELIKAGAGIGY 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            P + V+    +  LV+++ D    +  +   Y +    + K+++F +F
Sbjct: 240 QPLWAVQQELKDGTLVQLLPDYTIWTDQLNATYVDRAFLSAKVRSFIDF 288


>gi|298290456|ref|YP_003692395.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296926967|gb|ADH87776.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 309

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 8/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V  +G+F+ AA+ L + + +I++ I  LE+ +  KL  R  R + +T  G+  
Sbjct: 6   AMRAFVRVVEAGNFSRAADLLEMPKPTITKLIQQLESHLRTKLLNRTTRRVGVTPDGAAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   L+     + ++   PSG+LR+     L  N+L   L +F   YPDIQ+ L
Sbjct: 66  YERALALLSDLDELDGSMTKAQTTPSGRLRVDVGSSLALNVLIPALPDFHARYPDIQLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  DCAIR    +   SLI R++  + +   A P Y++    P   ++L
Sbjct: 126 GVSDRPADLVGENIDCAIR-GGELLDPSLIARRIGQVELVMCATPGYIQRHGMPQHPRDL 184

Query: 187 DK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
              H +I +    P+    F +         E  +   + VN   + +  C+ G GIA  
Sbjct: 185 RDGHRVIAY--FSPRTGRRFAFDMIRGEETYELDLPYAVAVNDSTAYLAACLTGLGIAHA 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + +++       LV ++ +       ++  Y      + +L+ F +++  
Sbjct: 243 VEPMIQPYLAAGTLVPVLPEWRGEPIVLHVVYAPNRHLSSRLRVFVDWVAE 293


>gi|116053880|ref|YP_788317.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313112269|ref|ZP_07798039.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|115589101|gb|ABJ15116.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310884541|gb|EFQ43135.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 312

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G
Sbjct: 3   TLQGMRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD+ 
Sbjct: 63  ERYLERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+
Sbjct: 123 IELTLSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L++H  +   D  P   E + +          P+ +   VN    + Q      GIAL
Sbjct: 183 DDLERHVCLRLQD--PAYPEGWIFADEQGERTVSPQ-NTFMVNVAEVMAQAAKADLGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+      N  L+R++        T+Y  YP       K++ + + +  + 
Sbjct: 240 LPSYVAAAALRNGELLRVLPGHAMHERTIYALYPSRRYLDAKIRTWVDLLQQEL 293


>gi|115360134|ref|YP_777272.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285422|gb|ABI90938.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 347

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 125/288 (43%), Gaps = 6/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
               F  +A+  S + AA  L ++  + ++++  LE   G +L  R  R ++LT +G   
Sbjct: 36  DFEFFVQLAKLKSLSGAARSLGITPPAATKRLGILEDRFGKRLVNRTTRSVSLTPEGEMY 95

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +++  ++   +  +  +   P G+LRI  T+  G+  +   + EF   YP++ +Q 
Sbjct: 96  ARYATQILDQVREMEDAIAGTPADPHGRLRINATLGFGRTTIAPLVSEFAKRYPNVDVQF 155

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++ +D+     D AIR  + +    L  R+L++      A+P YL+    P   ++L
Sbjct: 156 VVTDRPVDLVEGAFDMAIRFGE-LPDQRLRARRLMSNRRFLCASPKYLERNGVPQCKEDL 214

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I                   D          L  N    ++++ + G GI +  +
Sbjct: 215 AHHRCIIHTQNDDAFGVWR--FMQEDHLEALKVSGSLSSNDGDIVLRWALDGHGILIRSE 272

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + +     +  L  ++ DV+ PS  ++  YP     + + +AF +F+ 
Sbjct: 273 WDLAKYIQSGRLRLVLPDVVLPSADLFVYYPGQRNESTRARAFIDFLV 320


>gi|182680170|ref|YP_001834316.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636053|gb|ACB96827.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 302

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 130/292 (44%), Gaps = 12/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VA  GSF+  A +  +SQ++I R+I  LE    I LF+R  R + LT+ G  
Sbjct: 5   EDLHCFVRVAECGSFSIVARENMVSQATIGRRIGTLEDHFKILLFHRSTRKIVLTDAGQS 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  + E  +  L   S +P G++R+A+T   GQ L++G L +F   YP + I 
Sbjct: 65  FLVYARRILQEFEAAENALGRHSAEPKGRVRVASTNAFGQYLIRG-LAQFNERYPGLHID 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+L +  I++  D  D A+++ + +  SS++ R L  +     A+P YL     P     
Sbjct: 124 LVLGDGFINLIEDGFDLALKIGE-VTESSVVARHLGDVPRSLVASPAYLAKHGAPEDASA 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + F     + + +                   + NS ++  +    G GI+L P
Sbjct: 183 LQHHECVLFSYGATRQVWNV-------GGSLVRVSGSFRTNSSIAQFEAVRNGMGISLFP 235

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + V ++     L+R++ D+       Y  YP       + +   ++I  +A
Sbjct: 236 WFQVDEDVRSGRLIRLLPDMPIEPIHFYMTYPAYRTLPPRTRVVVDWITDEA 287


>gi|169634895|ref|YP_001708631.1| putative transcriptional regulator; transcriptional activator
           [Acinetobacter baumannii SDF]
 gi|169153687|emb|CAP02885.1| putative transcriptional regulator; transcriptional activator
           [Acinetobacter baumannii]
          Length = 300

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 145/300 (48%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT
Sbjct: 1   MKSTIEELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ ++L   + ELQ+S    +G LR+ +      +++   + +F   YP
Sbjct: 61  QEGQQFLIKARKILNELNAAEEELQKSDQGTAGLLRVDSATPFVLHVIAPLMHKFRECYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+I+L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P
Sbjct: 121 DIEIELNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL++H+LI F    P  +  +      +    + +I   + +S  ++ Q  + G G
Sbjct: 180 TQPEELEQHDLIGFTR--PTYINSWPIKVGDEYFFAQSKI---KASSGETVRQLTIRGHG 234

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ +    +   L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|313105919|ref|ZP_07792181.1| hypothetical protein PA39016_000120006 [Pseudomonas aeruginosa
           39016]
 gi|90569603|gb|ABD94674.1| putative LysR binding protein [Pseudomonas aeruginosa]
 gi|310878683|gb|EFQ37277.1| hypothetical protein PA39016_000120006 [Pseudomonas aeruginosa
           39016]
          Length = 296

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 147/295 (49%), Gaps = 8/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + +F  V R  S   AAE+L +  S++SR++S LE E+G++L  R  R L +TE G+
Sbjct: 4   LDDMEIFVEVVRQNSLRKAAEKLKIPVSTLSRRLSVLEKEIGVRLIRRTTRTLEVTELGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +       L + +  PSG LR++  +D     +   + ++  +YPDI  
Sbjct: 64  AYYQRCKPIVDEARVANQSLSDMASAPSGLLRVSMPVDFSIAYIMPLVIKYSEIYPDIDF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  L  + +D++ +  D AIRL +  QSSSLI R L+TI  + YA+P YLK    P S  
Sbjct: 124 EFDLTPRQVDLTREPLDVAIRLGEQ-QSSSLIARHLITIPRYLYASPEYLKVNGYPSSPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  +      P+  + ++ L   +    E +     +NS   +    ++G GIA++
Sbjct: 183 ELHSHKCLIMN--TPQERKYWSLLGKDEEAEVELK-GRFLMNSIGMLKNLAIMGEGIAMI 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              +V+    +  LVR++ +      +VY    E   +  K+ +F +F++   R+
Sbjct: 240 APGVVRKEASDGELVRVLPEWSGKPLSVYALT-ENRLSPVKISSFIDFLYDGLRN 293


>gi|154245010|ref|YP_001415968.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159095|gb|ABS66311.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 301

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 142/295 (48%), Gaps = 8/295 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +GSF+ AA  + ++ S++S+ I+ LE  +G++L  R  R L LT +G   
Sbjct: 7   EMMVFVRVVEAGSFSEAARLMLMTPSTVSKLIARLEARLGVRLIERSTRRLALTGEGQFY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +  +L+ T+ ++ +   +  G +R+ +++  G   L+  L  F   YP + + L
Sbjct: 67  YERSQALLGQLDETEQQIAQGGAEAEGVVRVTSSVSFGSAALEPVLPAFFEAYPKVIVDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+ +D  D AIR+ K +  S+L+ RK+        A+P YL     P + ++L
Sbjct: 127 SLSDEVVDLYLDRTDVAIRVGK-LVDSNLMARKIGETRRRIVASPAYLARHGTPATPEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN + F       +          R +       L VN+  ++ +  + G GI  L D
Sbjct: 186 VHHNCLGFNFRRAMPVWPMR---EGGRIVERMLSGSLLVNNGDTLRRMAIAGVGIIRLAD 242

Query: 247 YIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           Y +++      LV ++ D  I  +  V+  +  A     +++AF +F   + + +
Sbjct: 243 YHLREPIARGELVELLADTDIGVTDDVHALFRGAQFLPARVRAFLDFAVPRMQTF 297


>gi|295680500|ref|YP_003609074.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440395|gb|ADG19563.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 303

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 5/289 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V  +G+FT AAE L +  +S++R I  LE ++ ++L  R  R +T+T +G+  
Sbjct: 6   AMNAFVRVVEAGTFTKAAETLDMPNASLTRLIQKLEEDLKVRLLQRTTRSVTVTPEGAIY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  +    +     + +KPSG+LR+     +G  +L   L +F   YPDI I+L
Sbjct: 66  YERVVRLLAEFADIESSTTHARMKPSGRLRVDAATAIGALVLVPALDDFYRTYPDIGIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+  D+  +  DCAIR  + +    L+ R++ +      A P +L     P S  +L
Sbjct: 126 QVGNERTDLIAEGFDCAIRAGR-VDEQFLVARQIGSFGFTTCATPAFLAAHGTPTSPDQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I            F +L   DR  G      L VN   + +   +   GI   P 
Sbjct: 185 SALPTIGMIPSHAGYPPSFPFLYD-DRKDGLQLKHRLVVNDTNAYLAAGLASLGIIQAPT 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           Y V+D      LV ++ED   P+  V+  YP     + K + F +++  
Sbjct: 244 YSVRDAIAAGKLVPLLEDWPQPTIPVHVIYPPNRYLSAKARVFIDWLVE 292


>gi|257486797|ref|ZP_05640838.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|330988687|gb|EGH86790.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331010267|gb|EGH90323.1| regulatory protein LysR, substrate-binding protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 297

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 126/288 (43%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F +VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G 
Sbjct: 6   LNDLQAFLLVARDQSFTKAATKLGVTPSALSHSMRGLEERMGLRLLARTTRNVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI
Sbjct: 66  RLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q
Sbjct: 126 EICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I            + W    D R +          NS + ++   + G G+A 
Sbjct: 186 DLTQHTCINIRHSPNGSC--YAWEFEKDSRKLNLRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +PD + + +     L  ++ D        +  YP   + +    AF  
Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVE 291


>gi|167620283|ref|ZP_02388914.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257139347|ref|ZP_05587609.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 301

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE  +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   YP + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGSVSGVLRITAPGELGRLRIAPIVAAFRRQYPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGAPERP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W     +P+     + L  N   +     + G+GIAL
Sbjct: 184 ADLLAHRCIVMGEQPR-----VEWRFDGPQPVAVEVSAALLTNDGGAARALALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI-FLKARDWKF 299
              + V  +     L R++ +  + +  ++  YP       +++ F +++     R W +
Sbjct: 239 KSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGVELRRAWCW 298


>gi|158421907|ref|YP_001523199.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
 gi|158328796|dbj|BAF86281.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
          Length = 319

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 136/291 (46%), Gaps = 8/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +G F+ AA  LHL+ S++S+ I+ LE  +G +L  R+ R L LT +G+  
Sbjct: 11  EMEVFVRVVDAGGFSAAARALHLTPSAVSKLITRLELRLGARLINRNTRRLQLTAEGAAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   LE  +  +  S   PSG+LR+   +  G   L   L EFL  YP + + +
Sbjct: 71  YERAVTLLADLEEAERSVARS-EVPSGRLRVNANVPFGTLYLLPALPEFLARYPAVTLDV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +K +D+  +  D A+R   P++SS L+ RKL    M   A+P YL     P    +L
Sbjct: 130 VLTDKVVDLMEERMDVAVRAG-PLKSSQLVARKLGDTRMVIVASPEYLARHGTPRGPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D H  I F  L              +  +  P+   L  +   ++    + G+GIA L  
Sbjct: 189 DAHRCIGFCYLRQVEGWPLKAEEGREATVFRPQGHVL-ASDGETLRHMVLAGTGIARLGT 247

Query: 247 YIVKDN---PNLVRIMEDVIT-PSFTVYFCYP-EALKNTGKLKAFRNFIFL 292
           + V  +     LV ++ED     +  ++  Y  +      +++A+ +F+  
Sbjct: 248 FHVAADLLAGRLVPLLEDFNPGDTDPMHAVYLGQGGHMPARVRAYLDFLVE 298


>gi|254255290|ref|ZP_04948606.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124901027|gb|EAY71777.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 303

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+  SF+ AA  L +  S++SR++S LE  +G  L  R  R L+LT QG
Sbjct: 6   DLNDIAVFVRVAQFESFSRAARALGMPVSTVSRKVSALEERLGATLLQRTTRKLSLTAQG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  SE    L   +  + ++  KP G LRI+  + L Q      L  FL  YP IQ
Sbjct: 66  RAYFDQCSEPLSHLYDAERVITQTQKKPEGVLRISGPVMLEQEPFYAFLSAFLKDYPQIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   N  ID+  +  D AIR  + +Q SSL+ +++         +  Y +    P   
Sbjct: 126 VDLYFTNAFIDLIAENVDIAIRFGE-LQDSSLVAQRVGRSVRQLVVSADYARTHTLPSRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +EL +H  +    LI     +  W     R   +  +S  +    +  +  + + G GIA
Sbjct: 185 EELSQHPCV----LINARNNETEWQLVSRRKAVKVHVSGPVAARDFHIVHAFALRGHGIA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLP      +     LV ++ +  +P   V+  YP       KLKAF + +  
Sbjct: 241 LLPSSYCDPHIASGELVHVLPEWSSPEIFVHAVYPTRRFMPSKLKAFLDALKA 293


>gi|115359484|ref|YP_776622.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284772|gb|ABI90288.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 306

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 140/289 (48%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A  GS++ AA  L ++ S++S+ I  LE    +KLF R  R LTLT++G 
Sbjct: 9   LTGLIAFSRAASLGSYSAAARALGVTPSAVSKSIQRLEQHFELKLFNRTTRSLTLTQEGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +LH  T  +  ++E  +     +  +P+G L++   + +G +L+   L  F   +P + I
Sbjct: 69  ELHERTLRLLAEMEAIEQAAVSARSEPAGTLKVTAPLPIGIHLIAPALPAFRKRFPKLSI 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D+  +  D AIR+   +  S LI R+L   H+ AYA+P YL     P    
Sbjct: 129 DLRLGDHFVDLVGEGVDVAIRVGD-LTGSRLISRQLSPHHIGAYASPDYLARRGVPKHPD 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + F       +  +N   T D  +     + + V++  ++    V G G+ + 
Sbjct: 188 DLVDHDCVNFRFQSSGQVFRWN-FVTGDGSLDLIPDAGIVVDTSDAVAAVMVAGGGVGIT 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y+         LV+++ + + P  T+   +PE+ +++  +KAF   +
Sbjct: 247 PAYVADSYVKRGELVQVLTEFVEPRSTITALWPESRRSSPNVKAFVAHL 295


>gi|293394338|ref|ZP_06638638.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291423316|gb|EFE96545.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 306

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 142/297 (47%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + + VF     +G+F  AA +LHLS+S++ + I+ LE  +G++LF+R  R  +LT
Sbjct: 1   MSDRLNGISVFVTAVEAGNFALAASRLHLSRSAVGKTIARLEQRLGVRLFHRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+  +        ++ T +  L+    + SG+LR++  +  G+  +   L E    +P
Sbjct: 61  DDGALFYERCLRALEEIRTAETLLESGKRQVSGRLRVSMPVLFGRLCIAPILTELAREHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +++ +D+  D  D  +R      S+ L+ R+L   HM   A+P YL  C EP
Sbjct: 121 QLELELSFNDRLVDMIEDGFDLVVRNGALPDSARLVARRLGNHHMAFCASPAYLARCGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++  L +H+ + +  L    + ++               + L ++   ++    + G G
Sbjct: 181 TTLDALAQHDAVAY--LRSGTIRNWEVPLEQGETRLIAPRARLVMDDLQALADATMAGFG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  LP ++V+D   +  LVR+++      F  +  +P       K++   + +  K 
Sbjct: 239 IGWLPCWLVRDQLLSGELVRVLQQYPGAEFNAHALWPHTPHLPLKVRLAVDALANKL 295


>gi|254419504|ref|ZP_05033228.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
 gi|196185681|gb|EDX80657.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
          Length = 298

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 134/303 (44%), Gaps = 13/303 (4%)

Query: 1   MSFD----WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           M  +      ++ +F  V +SGSF+ A   L L+ S++SR I  +E  +G++L  R  R 
Sbjct: 1   MQMNGADRAREMEIFVAVTKSGSFSAAGRVLGLTPSAVSRTIDRIEARLGVRLMLRTTRV 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           LTLT +G         +   L+  +  + +    P G++R++ ++  G+  +   L +F+
Sbjct: 61  LTLTAEGQTYLGAARRILADLDDAEQGIADQGA-PRGRVRVSASLAHGRQHVVPLLGDFV 119

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP I I + L +  +D++   AD AIR   P+  S L  R+L        A+P YL  
Sbjct: 120 RRYPHILIDINLTDVVVDVAAGQADVAIRFG-PLADSPLTARRLGDTGRTIVASPDYLAR 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P   ++L  H+ + F     + +  F       R         ++ N+  ++ Q  V
Sbjct: 179 RGTPTVPEDLHDHDCLNFNFRRAEPVWPFR---RDGRDYALTVRGPIEANNGETLTQLAV 235

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
            G G+  + ++ V    D   LV ++ED        ++  +        +++ F +F+  
Sbjct: 236 AGVGVTRVGNFSVADAIDAGRLVPLLEDFNPGDREPIHAVFVGGANMPARVRVFVDFLAE 295

Query: 293 KAR 295
           + R
Sbjct: 296 RLR 298


>gi|66044685|ref|YP_234526.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255392|gb|AAY36488.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 293

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 134/298 (44%), Gaps = 11/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +F      G+ T A  +L L  S  S++++ LE  +G++L +R  R +TLTE 
Sbjct: 1   MDIQALNLFVRSMEMGNITAAGAELGLVPSVASQKLAKLEKSLGMRLLHRTTRQVTLTED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      S +   ++       +S   P   LRI+      +  L   +  FL  +P++
Sbjct: 61  GALFLPHASRIIAAVDEAYFTTVKSQETPKRVLRISAPGSFARVCLMPAVTRFLRSHPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+L ++  +++    D AIR+   ++ S+ + RKL        A+P YL+   +P  
Sbjct: 121 KIDLVLSDEVQNLTEIGIDVAIRIAA-LKDSTHVARKLGNDTRILCASPAYLEQKGKPGE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ IT G+      E+    A   R          +VN   +     V G GIA
Sbjct: 180 PEDLSRHDCITLGE------ENRWHFAGNARNPFSIINGSFRVNCGEAARIAAVEGLGIA 233

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +  +  + +    +LV ++       S  V+  YP + + + K +AF +F+  +  D
Sbjct: 234 SISLWNARASLSKGDLVEVLSSFALEQSRAVWAIYPSSRQISSKARAFVDFLSQEFVD 291


>gi|291618514|ref|YP_003521256.1| YcaN [Pantoea ananatis LMG 20103]
 gi|291153544|gb|ADD78128.1| YcaN [Pantoea ananatis LMG 20103]
          Length = 317

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 123/296 (41%), Gaps = 5/296 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F  V+R  SF  A ++L LS S++S  I  LE  + I+LF R  R + LT
Sbjct: 17  MKLNVYDFATFIAVSRHKSFRAAGDELGLSPSAVSHAIKQLEQRLKIRLFNRTTRSVALT 76

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+ L+      + ++     E       P G L+I ++    + +L   +  F  LYP
Sbjct: 77  EAGANLYERLRPAFDEINVILDEANCFRQTPMGSLKINSSRLASRMVLIPLVATFSRLYP 136

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++++  +++ +DI  +  D  IRL   ++   +       I +   A P Y      P
Sbjct: 137 DIRVEITTEDRLVDIVKEGFDAGIRLSSRLEKDMIALPVGPKIRLVVVATPDYFARHAPP 196

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +++  H  + F     +  +     +  +  +       + ++   +     + G+G
Sbjct: 197 EHPRDIMNHQCVMFRHGSGRIYQWE--FSGPEGRLEILPTGNILLDDMDAQRDAVLCGAG 254

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  L    VKD      LV ++E  +    ++ F YP     +  L+AF + I   
Sbjct: 255 LGYLYHEQVKDELAAGRLVPVLEAWLPEQPSLQFYYPNRHYMSSALRAFIDHIKAA 310


>gi|221211513|ref|ZP_03584492.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168874|gb|EEE01342.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 300

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 138/300 (46%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD   L    V   V  +GSF  A E + L+Q ++SR ++ LE  +GI++F R AR +
Sbjct: 1   MRFDSRLLSGIGVLSAVIEAGSFARAGEAIGLTQPAVSRAVARLEERIGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++   +  K  G+LR+      G  +L   L  FL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEDAALDAGRAKEKVRGRLRVNVDGTFGHYVLAPKLAAFLE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+P Y+   
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGVP-EPSSYRARLLLETRVLTCASPAYVARH 179

Query: 178 REPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYC 235
            EP   +EL   H  +   D  P     F W       +        L VN   S++  C
Sbjct: 180 GEPRHPRELADGHRCVLIRD--PVTGRPFEWEFHRGGEVVPFAAAGRLMVNDTGSLLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G+G+A L +   +D      L  ++ D    +F +Y  Y  +   + K++ F +F+  
Sbjct: 238 LGGAGVAQLLELYARDIVSEGRLTLLLPDWTDETFPLYAYYHASNLVSAKVRVFLDFVRE 297


>gi|73541641|ref|YP_296161.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72119054|gb|AAZ61317.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 304

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 125/280 (44%), Gaps = 8/280 (2%)

Query: 15  ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVY 74
           A  GS + AA    ++ + I R+I  LE  +G+KL  R  R ++LT +GS        + 
Sbjct: 2   ASRGSLSAAAGAEGVAPAIIGRRIDALEERLGVKLLIRTTRKISLTFEGSAFLEDCQRIL 61

Query: 75  HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDID 134
           + L   +  +    VK SG LR+      G+  +   +  F+  +PD+ I L L ++ +D
Sbjct: 62  NDLHNAEASVSAGGVKASGHLRVTAPAGYGRKHVAPLVPLFIESHPDVTITLDLSDRVVD 121

Query: 135 ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF 194
           +  +  DCAIRL   +  SSL+  +L        A+P YL     P+  +EL  HN + F
Sbjct: 122 LVNEGFDCAIRLGD-LPDSSLVSIRLAETRRVVVASPDYLARAGTPVLPEELQGHNCLAF 180

Query: 195 GDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVK--- 250
           G           W+   +      ++   ++      + ++C+ G G+A    + V    
Sbjct: 181 G---ASANVQRGWVFQQEGHTVTVKVGGDMECTDGAVLHEWCLQGHGLAWRSWWEVGSEI 237

Query: 251 DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  LV ++++   P   ++  +P+      +++ F + +
Sbjct: 238 ASGRLVTVLDEFQAPPIGIHAVFPQRKHLPLRVRLFIDHL 277


>gi|311106706|ref|YP_003979559.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761395|gb|ADP16844.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           109 [Achromobacter xylosoxidans A8]
          Length = 311

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +R F      G+ +  A +  LSQ ++S+ ++ LE ++ ++L  R    +  TEQG
Sbjct: 3   TLRAMRAFVRAVELGTLSAVAREQALSQPALSKIVAALEKDLNVRLLERSTTRVVPTEQG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +   + V  +      + +  + KP+G LRI   + LGQ  L   +++FL  YPDIQ
Sbjct: 63  KRFYERATRVLEEYSEAVADARGQTEKPAGFLRINAPVALGQFRLNALVRKFLDEYPDIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LIL+++ +D+  +  D A+RL   +   + I RK      +  AAP YL    +P + 
Sbjct: 123 VELILNDRFVDLVEEGVDVALRLGGNLP-PNAIARKAAESPRYLVAAPSYLAQRGKPRAP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  + F  L      + +  AT+            +VN+ L+I +   +G+GI L
Sbjct: 182 RDLAAHEYVRFAWLAAGDTLELHQGATL---ATVQTQGRFRVNNALAIRESLAMGAGIGL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P ++V+D   +  L+R++          Y  YP     + + +   +F+
Sbjct: 239 CPAWLVQDLVASGELLRVLPKWSATPQEAYLIYPSRRYQSLRARLLIDFL 288


>gi|262369809|ref|ZP_06063137.1| LysR substrate binding domain-containing protein [Acinetobacter
           johnsonii SH046]
 gi|262315877|gb|EEY96916.1| LysR substrate binding domain-containing protein [Acinetobacter
           johnsonii SH046]
          Length = 302

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 146/297 (49%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F  V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLSDLDDFYCFAQVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  + + QN +   L  FL  YP
Sbjct: 61  DIGMNIYRHAQVMMNAAQAAHDLVDHLSLQPRGVIKLSLPVSIAQNEIARILPSFLKTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++Q+++ N+ +DI  +  D A+R+R  +    SL+ RK   I  H +A+  YL    E
Sbjct: 121 EIKVQMMVTNRRVDIINEGFDIALRVRSNLDDDPSLVIRKFENIEQHLFASQAYLNEFGE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLG 238
               ++L +H++++  D   + ++    +    +   + R++ + + S LS++ Q     
Sbjct: 181 LKQPEDLSQHHILSMVD---EHLDQHIIVHNDAQQQKKIRVNPVVMGSDLSMLAQLVRKN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIALLPD IV+D   +  LVR++ D   P    +  YP        ++ F +++  
Sbjct: 238 CGIALLPDSIVQDMVKSGELVRVLPDWKAPHGIFHAVYPSRRGLLPAVRVFIDYLIE 294


>gi|118588441|ref|ZP_01545850.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Stappia aggregata IAM 12614]
 gi|118439147|gb|EAV45779.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Stappia aggregata IAM 12614]
          Length = 293

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 136/288 (47%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  S  F+ AA ++  S++ +S+ +  LE E+G++L  R  R ++LTE G   +
Sbjct: 1   MRCFIQVVDSNGFSAAAREMGRSKALVSKYVGELEDELGVRLLNRTTRQVSLTEVGEAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  SE+  +++  Q  +Q S  +  G+LR++    +G +LL   + +FL+ YP+I + L 
Sbjct: 61  KEASEILQRIDDLQASVQSSHQEVRGRLRVSAPRSMGDDLLNQAMMQFLVRYPEINLDLR 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D A+R+ + ++ SSLI RK+        A P  ++    P    +L 
Sbjct: 121 LEDRFVDLVEEGFDLAVRVAQ-LEDSSLIARKIAPFRTVVCATPKTVETYGAPKVPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               I   +   K    F+   T            L+VNS  +     +   G    P +
Sbjct: 180 TRPCIIDTNYRYKQNWAFH---TNGERTSVTVKGPLEVNSAAAARDAALCNLGFLRTPLF 236

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            V     +  LV ++E    P   +Y  YP     + K++AF +F+  
Sbjct: 237 FVSKEIRDGRLVLLLESHEEPMRGIYAVYPHRRHLSAKVRAFVDFLVE 284


>gi|87120784|ref|ZP_01076677.1| Transcriptional Regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86164012|gb|EAQ65284.1| Transcriptional Regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 298

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 140/286 (48%), Gaps = 5/286 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA   SFT AA+ L+L ++++S  I  LE  + ++L  R  R ++LT +G      
Sbjct: 9   VFATVAEQLSFTKAADILNLPRATVSTSIQSLEARLRVQLLNRTTRRVSLTLEGQVFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  +++  +   Q+S+ K  G+++I   ++  + ++   L EF   +P+I+I L   
Sbjct: 69  CQTVLTEIDDLEKSFQQSTGKLDGRIKIDMPVNFAREIVLPRLFEFNNKFPEIEIDLSSH 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID+  +  D  IR R     S+ + RKL+ + +  YA+P YLK    P ++ +L  H
Sbjct: 129 DTFIDVVGESVDLVIR-RGDYSDSNFVVRKLMNVSIGNYASPAYLKERGVPKNLDDLKHH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           +L+T+   +     +FN+L   +      R S + VNS +S    C+ G GIA LP   V
Sbjct: 188 SLVTYSPSLGNKTGNFNYLYDREVKKVSMRTS-INVNSTVSYTDACLGGLGIAQLPKEAV 246

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                   L+ ++ +   P   +   + +  K + ++  F +++  
Sbjct: 247 GSYVLQGKLIEVLPNYAMPKSQIDLIHLKNKKVSRRVLVFIDWLLA 292


>gi|148553990|ref|YP_001261572.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148499180|gb|ABQ67434.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 313

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 137/294 (46%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+    F  V   GSFT AAE+L LS+S+ISR +S LE  +G +L +R  R L  T+ G 
Sbjct: 4   WETYEAFIAVVECGSFTAAAERLRLSKSAISRSVSSLEARLGSQLLFRTTRRLAPTDLGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E++  L     E  E      GKLRI  +   G+  +     E + L+  ++I
Sbjct: 64  SVYRRCVELFDMLAEIDAEAMEHDASLRGKLRIVASDSFGECYIAPLAAEMMRLHEQLEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + ++ ++ IDI  D  D AIR    +  SSL  +KL  +     A+P YL     P ++ 
Sbjct: 124 EFLVTDRTIDIVADGYDMAIRYNAQV-DSSLKVQKLYELPHICAASPEYLLRAGTPFTLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +HN +     +        W   + R    P +S     N+  +++   + G GI  
Sbjct: 183 DLTRHNCL-----VSTFEACHAWRFGMGRTQKTPNLSGNWCSNNGPALLTAALNGIGIVW 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP+  ++       L+ ++ +  +    V+  YP   +   K++AF +++  + 
Sbjct: 238 LPELYLRPYIKAGALIELLGEHRSDPMPVWAVYPARRQ-AAKVRAFIDYVKSRL 290


>gi|171319689|ref|ZP_02908780.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095069|gb|EDT40080.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 313

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 123/299 (41%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 12  PLDLLDVGLFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 72  DGEVFMARAEALLSAADAARASVGHGRSEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPS 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  D  D AIRL   ++ S+L+ RKL         +P YL     P 
Sbjct: 132 VSLDLRLSDEIVDLVDDGYDVAIRLGA-LKDSTLVARKLAANRRVLCCSPAYLAEHGTPR 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +  GD             T   P+       L  ++  +I +  V G GI
Sbjct: 191 HPADLAQHECVILGDQRDWS------FVTPQGPLTVRVGGRLVASNGEAIREALVDGFGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     N  LV +++D        ++  YP       K  AF  F+     D
Sbjct: 245 AIKSTWDVGPLLANGTLVTVLDDYPFAHDVAIWAVYPSRAHVPLKTLAFIAFLAEHFGD 303


>gi|186473956|ref|YP_001861298.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196288|gb|ACC74252.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 308

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +GSF+ AA +L + Q ++S+ I+ LE  +  +L  R  RGLT T+
Sbjct: 1   MDRLAAMETFVAVVEAGSFSAAARRLQIGQPAVSKSIAQLEEHLNARLLLRSTRGLTPTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +        + +  +  ++ESS   SG+LR    +   +  +   L  FL  +P 
Sbjct: 61  AGQRFYEHACLAIEEADRAEHSVRESSEGLSGRLRAGAPVTFARLHVIPALGAFLDQHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++++D++ ID+  +  D A+R+ + +  S +  R++V+          Y +    P 
Sbjct: 121 LDVEIVMDDRPIDLLEEGIDVALRMGR-LDDSGMTARRVVSGRRLVVGTKKYFERHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  I     +    + + +             S ++V++   +    +   G+
Sbjct: 180 TPADLSQHQAIVHA--MRSGGDSWAFGHADGTEAAVTVSSRVRVSAAEGMRAAVLAHMGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+  +++      + ++  ++ D   P   V+  +P     T K +AF +FI
Sbjct: 238 AVASEWMFAPELADGSVQAVLSDWTLPGVDVWAVFPSGRMATTKARAFVSFI 289


>gi|150378261|ref|YP_001314856.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032808|gb|ABR64923.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 291

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 129/293 (44%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+ SF  AAE L +  S++SR+IS LE  +G++L +R  R + LTE G 
Sbjct: 4   LNDMALFVEVARARSFRKAAEALGMPNSTLSRRISELEKAIGLRLLHRTTRKIELTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  +  +      +L     +PSG LR++  +DL    L   + EF   YP I  
Sbjct: 64  LYFERSKRIVDEARLAHEQLGAMLEQPSGVLRVSLPVDLATFYLTPIIGEFARHYPGITF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  L  + +D+  +  D AIR+ K ++ SSLI R +     H YA+P +++   EP    
Sbjct: 124 EFDLTPRRVDLVAEPFDLAIRIGK-LEDSSLITRLIGRHSRHLYASPGHIEASGEPARPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH  I         +            +         +NS   I    V   GIALL
Sbjct: 183 DLAKHECIGMLRSPIWTLHRGA------NKVDVAVRGRFTLNSVGMIRALAVNHQGIALL 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P+ I+ D+     L RI+ +       +Y    E      K + F  F+  + 
Sbjct: 237 PEKIIADDLSSGRLRRILPEWQGSPVNIYAVT-ETRLIPAKTQRFIEFLSSRL 288


>gi|262194584|ref|YP_003265793.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262077931|gb|ACY13900.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 296

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 136/293 (46%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V  +GSF+ AA +   S++++S+ ++ LE  +G+ L  R+ R LTLTE G+
Sbjct: 4   LTAMYAFARVVDAGSFSAAARRWGRSKAAVSKYVADLEAHLGVTLLRRNTRSLTLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E+ + ++  +  L+E      G LR+          L     +F+  +P ++I
Sbjct: 64  AYYPRCIEILNAVDAAETGLREQQSALRGTLRVTAPPGFASRYLAVLTSDFVARHPQVRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ ID+  +  D A+R+ +P Q SSLI R+L      A AAP YL    +P + +
Sbjct: 124 DLDLTHRMIDLVEEAVDVAVRMTEP-QDSSLIARRLAPAPCIAVAAPRYLAARGQPETPR 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ +   +   +    F       R          +VNS L++    + G GIA++
Sbjct: 183 ELRAHDCLVDTNFRDQQRWRFR---VGGRTQRVTVDGPFRVNSPLAVRDLAIAGHGIAIV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  I +       LV ++   +   +++Y  YP       +++A+ + +    
Sbjct: 240 PALIAEAAIATGELVEVLPGTVALRWSIYAAYPRREHLPERVRAYVDHLAEAL 292


>gi|294624608|ref|ZP_06703281.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665268|ref|ZP_06730562.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292601081|gb|EFF45145.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604945|gb|EFF48302.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 369

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 131/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE LH+S++S ++ +  LE  + +KL  R  R + +T  G+
Sbjct: 65  FDAMQAFARVVETGSFTKAAEHLHMSRASATQLVQQLEARLRVKLLNRTTRRVQVTADGA 124

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   ++  +  L  ++  P G+LR+     L + +L   L  F   YP+IQ+
Sbjct: 125 AYYERVLRLLADMDDAETSLSVAATSPRGRLRVDVPSPLARLILMPALPAFHARYPEIQL 184

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC IR    I   SL+ R +  +    YAAP YL+    P    
Sbjct: 185 DMGVSDRRVDLIGENVDCVIR-GGAITDQSLMARHVGDLQAGVYAAPDYLQRLGAPTHPT 243

Query: 185 ELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL+  +H  + F          +  +   D  +       +  +   + +   + G G+ 
Sbjct: 244 ELENTRHRCVGFMRWGSSTTVPYV-MQRGDEAVRVHGRHVVAADDGNAYLAAGLAGMGVL 302

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP Y+   +     LV I +D    +  +   +P     + KL+ F +++  
Sbjct: 303 WLPVYMANAHVASGELVPIFQDWQLEAMPLSIAFPPNRHVSAKLRVFIDWVIA 355


>gi|289626642|ref|ZP_06459596.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649222|ref|ZP_06480565.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330869393|gb|EGH04102.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 297

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 126/288 (43%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G 
Sbjct: 6   LNDLQAFLQVARDQSFTKAATRLGVTPSALSHTMRGLEERMGLRLLARTTRNVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI
Sbjct: 66  RLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q
Sbjct: 126 EICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPVYFERHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I            + W    D      R+S     NS + ++   + G G+A 
Sbjct: 186 DLTQHTCINIRHSPNGSC--YAWEFEKDSRKLNIRVSGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +PD + + +     L  ++ D        +  YP   + +    AF  
Sbjct: 244 VPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVE 291


>gi|254505158|ref|ZP_05117309.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222441229|gb|EEE47908.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 297

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 69/279 (24%), Positives = 138/279 (49%), Gaps = 7/279 (2%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
            S  F+ AA  +  S++ +S+ +S LE E+G++L  R  R +++TE G   ++  SE+  
Sbjct: 2   DSKGFSAAARDMGRSKALVSKYVSELEDELGVRLLNRTTRQVSMTEVGESYYKEASEILQ 61

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
           +++  Q  +Q S  +  G+LR++    +G  LL   + EFL  +PD+ + L L+++ +D+
Sbjct: 62  RIDDLQASVQSSQQEIRGRLRVSAPRSMGDKLLNAAMMEFLAQHPDVVLDLRLEDRFVDL 121

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG 195
             +  D A+R+ + ++ SSLI RK+        A+P  L     P    +L     I   
Sbjct: 122 VEEGFDIAVRVTQ-LEDSSLIARKIAPFRTVICASPELLAKVGVPNIPADLADRPCII-- 178

Query: 196 DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---N 252
           D   +  +++ + +  +R +   +   ++VNS  ++ +  + G G   +P + V +    
Sbjct: 179 DTNYRYKQNWAFGSQGERQMVTVK-GPVEVNSAEAVCEAALQGLGFIRMPLFFVSEYINE 237

Query: 253 PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             L  ++ +   P   +Y  YP     T K++A  +F+ 
Sbjct: 238 GRLKIVLAEHEEPMRGIYAVYPHRRHLTVKVRALVDFLV 276


>gi|28897651|ref|NP_797256.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364580|ref|ZP_05777189.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260876453|ref|ZP_05888808.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260895875|ref|ZP_05904371.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260902775|ref|ZP_05911170.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28805864|dbj|BAC59140.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308086755|gb|EFO36450.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092807|gb|EFO42502.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308108656|gb|EFO46196.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308115388|gb|EFO52928.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 314

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 129/292 (44%), Gaps = 9/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  +FT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVIFSALIKHKNFTVAAKSLGVSVSHVSKQLSQLEESLGIKLVQRTTRSFTPTEAGKTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +V   + +  +E++    + +G +R+  +   G   +   ++E   LYP +Q+++
Sbjct: 68  YHHCEQVVQAVSSATLEMESQRDEVAGLVRLGLSQSFGTLHIIPAIQELRELYPQLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  +   + +     I ++L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMLAEGLDLWVTNNEHLP-EGYIAQRLTDCQFVVAASPDYLLKYDTPTEPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + +        +   W  T  +     ++S    V+   ++    + G GIA L 
Sbjct: 187 SLHNCLIYRS---WERDYTGWAFTKGQQELNVKVSGNYSVDLAEAVRDAAIAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            Y++ D      L++++ D   + S   Y  YP       K+ A  NFI  K
Sbjct: 244 TYLLGDEFRTGKLIQLLPDWKASQSMPFYAVYPSRQHMPKKISAVINFIKQK 295


>gi|116052216|ref|YP_788940.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587437|gb|ABJ13452.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 307

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R L LT 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAAETLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  +L+  +  L  +++ P G+LRI     L + LL   L EF   YPD
Sbjct: 61  DGAAYYERVVRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ +D+  +  DC IR    ++  SL+ R++  + +  YAAP YL+    P 
Sbjct: 121 IQIDLGVSDRLVDLIDENVDCVIR-GGELRDQSLMARRVGDLQLGVYAAPAYLQRAGVPS 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +EL+  H  I               +   +  +       L V+   + +   + G G
Sbjct: 180 HPRELEDSHQRIVGFLWARTGKALPYAMHRGEESLRVAGRHVLAVDDGNAYLAAGLAGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP Y+ ++      L+ + ED       +Y  +P     +GKL+ F  ++  
Sbjct: 240 ILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWVAE 294


>gi|229592194|ref|YP_002874313.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
 gi|229364060|emb|CAY51645.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
          Length = 298

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 134/294 (45%), Gaps = 5/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F  V    SFT A E L L +S++S  +  LE  +G +L  R  R +  T+ G 
Sbjct: 4   LELLRTFVRVTELSSFTQAGESLGLPRSTVSEHVQALEELLGARLLQRTTRTVQATQDGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+  + ++   +E  +   ++   + SG++R+     + + L+   L  F+  +P I++
Sbjct: 64  VLYERSKDLLSHMEELEGLFRQDEAQLSGRIRVDMPNVMARELILPRLPSFMDAHPLIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D+  +  DC +R+       +++ R+L ++ M   A+  YL+    P ++ 
Sbjct: 124 EISTTDRQVDLLAEGFDCVLRVGAQ-PDQTVVARRLCSLPMINCASAAYLQRHGVPETLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+ +   +      F ++   ++         + VNS  +    C+ G GI  +
Sbjct: 183 DLARHQLVHYVRPLGARSAGFEYVQG-NKVQRIAMAGRVTVNSTDAYKAACLGGFGITQV 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P   + D   +  LV ++ D   P+  V   Y        +++ F +++    +
Sbjct: 242 PALGIGDLLASGELVAVLPDYPAPALDVSLLYAGQRHLPQRVRVFMDWLAATLQ 295


>gi|254250705|ref|ZP_04944024.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124879839|gb|EAY67195.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 305

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 137/290 (47%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   +
Sbjct: 7   MRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  +++  +  + ++   P G+L++     + + ++   L  FL  +PDI ++L 
Sbjct: 67  ERSVAVLREIDDMEASVSQARNVPRGRLKVNLPPAMAKQVVVPALPAFLDAHPDIMLELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S +I +++ ++      +P Y   C EP ++ +L 
Sbjct: 127 VTDRQIDLVGEGVDCVVRIGA-LDDSGMIAKRIGSLTTCTCGSPAYFARCGEPQTVDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  +    +         W   VD   GEPRI      + VN   + ++  V G G+  
Sbjct: 186 QH--VAVSHISADTGRPRPWDYVVD---GEPRIVQMCGTVAVNDADNYIECGVAGIGLIK 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              Y+V+    +  L  ++ D   P+  +   YP       KLK F +++
Sbjct: 241 TSLYLVEPYLKSGRLREVLTDFNAPARPISVLYPPNRHIPVKLKVFVDWL 290


>gi|322614000|gb|EFY10936.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617892|gb|EFY14785.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625493|gb|EFY22319.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629958|gb|EFY26731.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632153|gb|EFY28904.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636497|gb|EFY33204.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643131|gb|EFY39705.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644648|gb|EFY41184.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651328|gb|EFY47712.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652756|gb|EFY49095.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659057|gb|EFY55309.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663241|gb|EFY59445.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668727|gb|EFY64880.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674469|gb|EFY70562.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678324|gb|EFY74385.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682418|gb|EFY78439.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684132|gb|EFY80138.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192312|gb|EFZ77544.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196260|gb|EFZ81412.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201408|gb|EFZ86474.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206482|gb|EFZ91443.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212074|gb|EFZ96901.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216979|gb|EGA01702.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220344|gb|EGA04798.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224392|gb|EGA08681.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228321|gb|EGA12452.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233412|gb|EGA17505.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237127|gb|EGA21194.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243658|gb|EGA27674.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246098|gb|EGA30085.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250878|gb|EGA34756.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257629|gb|EGA41315.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261836|gb|EGA45403.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266107|gb|EGA49598.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268651|gb|EGA52118.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 299

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 6   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 66  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLPTFLHQYPGIALEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R   P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 126 CSSDRQVDLLREDFDCVVR-TDPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 185 ASHAVVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         V   YP     + ++  F  ++    ++
Sbjct: 244 IAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKE 296


>gi|254251654|ref|ZP_04944972.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
 gi|124894263|gb|EAY68143.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
          Length = 300

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 139/300 (46%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD   L    V   V  +G+F  A E L L+Q ++SR ++ LE  +GI++F R AR +
Sbjct: 1   MGFDSRLLSGIGVLSAVIEAGTFARAGEALGLTQPAVSRAVARLEERIGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++   +  K  GKLR+      G  +L   +  FL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEDAALDAGRAKAKVRGKLRVNVDGTFGHYVLAPKMAAFLE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+P Y+   
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGVP-EPSSYRARLLLETRVLTCASPAYVARH 179

Query: 178 REPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYC 235
            EP    EL   H  +   D  P     F W       +        L VN   S++  C
Sbjct: 180 GEPRHPHELADGHCCVLMRD--PATGRPFEWAFHRGGEVVPLAAAGRLMVNDTGSLLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V G+G+A L +   +D   +  L  ++ +    +F +Y  Y  +   + K++AF +F+  
Sbjct: 238 VGGAGVAQLLELYARDTIADGRLKLLLPEWTDETFPLYAYYHASNLVSAKVRAFLDFVRE 297


>gi|323498510|ref|ZP_08103503.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323316399|gb|EGA69417.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 296

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 144/295 (48%), Gaps = 8/295 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F   A+ GSF+ A  +L +S +++S+ ++ LE + G++LF+R+ R  +LTE G+ L
Sbjct: 5   QLPLFIAAAQEGSFSAAGRKLGISAAAVSKGVAALEKQTGVRLFHRNTRQFSLTEDGANL 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++  S +  +LE +   L E +   +GKLR+      G+  +  ++ +FL L+P+I++ L
Sbjct: 65  YQKVSPLLLELEQSIDGLTEQNRSAAGKLRVNIPDSFGRRFVMPHIAKFLRLHPNIELDL 124

Query: 127 ILDNKDIDISMDYADCAI--RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L ++ +D+  +  D ++  R+    + S L+ R +  +    +A   Y++   +P +I+
Sbjct: 125 VLSDRVLDVVDEGFDVSVGNRIN---EDSRLVARPIYDMQSGIFAHRDYVEQFGQPKTIE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  HN I +  L      ++         I       L V++  + +       GIA +
Sbjct: 182 ELSHHNCIIYRPLSSGRTYNWALTDEHGEHIQFRPKGNLSVSNISAAIIALQQNLGIAYM 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             + V++      ++ ++ D    S  V+  Y        + + F +F+    + 
Sbjct: 242 GAWHVEEQVKRGEVIPVLTDNWGTSKPVWIYYSSRDNLPKRTRLFIDFLVEHIKQ 296


>gi|311105588|ref|YP_003978441.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760277|gb|ADP15726.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           63 [Achromobacter xylosoxidans A8]
          Length = 292

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 139/294 (47%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + +  F   A+ GS+  AAE L LS S++ + ++ LE  +G++L  R  R ++LTE+G
Sbjct: 3   SLNGIHAFVHAAQRGSYVAAAEHLGLSASAVGKSVARLEDRLGVRLLNRSTRRISLTEEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        + ++L+  + E+      P G+LR++    +G  LL   L EF   YP+I+
Sbjct: 63  ALYLERCLRIVNELDEAEAEVTRGREAPRGRLRVSVP-AIGYRLLLPLLPEFTRRYPEIE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  +++ +D+  +  D  IR  +    S L  R L         AP YL     P + 
Sbjct: 122 LELDFNDRIVDVIGEGLDAVIRSGE-FADSRLRARPLRPYRFVVAGAPAYLAARGRPRAP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +LD H  + +       ++ + +    D P+  P  + L  NS  +++     G G+A 
Sbjct: 181 GDLDGHARLAYRYPGTSQVQPWQFR---DGPVA-PAPAALSFNSVEALIGAAQAGLGLAY 236

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPD+ ++   D   L  +++D +         +P++     KL+AF +F+  + 
Sbjct: 237 LPDFALRAALDEGRLATVLDDCLDADGRFSVLWPDSRHPLPKLRAFVDFMAERL 290


>gi|260463108|ref|ZP_05811311.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031229|gb|EEW32502.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 297

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 134/300 (44%), Gaps = 13/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R+F  V    SFT AA  L L +S+ +  I  LE  +G +L  R  R +  T+
Sbjct: 1   MDRLDTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +  ++E  +   + +  +P G LRI  +  L +  L   L EFL  +  
Sbjct: 61  DGEAYYRRCLSILAEIEDAEAAFRNA--EPFGLLRIDASTLLTRTFLLPRLPEFLARHSR 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +Q+   ++ +D+  +  DC IR+ +P   S +I R+L  I     A+P YL+    P 
Sbjct: 119 IDLQIGQSDRLVDLVREGVDCVIRVGEP-PDSGMIMRRLAMIREMTCASPAYLERHGTPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S   LD H  + F  +  +  E   +  TV     E R+   +  N+  +      LG G
Sbjct: 178 SPDALDGHQAVGF--VSSRTGEVLPFEFTVGGKTREVRLPGRVAANNSDTAADLARLGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKA 294
           +   P Y  +    +  L+ ++ D       +   YP+  + + +L+ F ++   IF +A
Sbjct: 236 LIQAPRYRFEKDLADGTLIEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWAARIFAEA 295


>gi|78063311|ref|YP_373219.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971196|gb|ABB12575.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 300

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 136/297 (45%), Gaps = 12/297 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++++  +   G+FT AA+ L L + ++++ +  LE E+G++L  R  R +++T 
Sbjct: 1   MDRLQAMQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGVRLLNRSTRRVSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   H    ++   ++       +    P G+LRI   + L + ++   L +F   YP 
Sbjct: 61  EGEAFHARCVQLLGSIDDAFASFPKQRAIPKGRLRIDIALALAKTVVIPALPDFQQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++  D+  +  DC +R+ K ++ SS++ R +  + M   A+P Y+     P 
Sbjct: 121 IELVLGASDQPADLIGEGIDCVVRVGK-LKDSSMVARTVGAVPMVTCASPAYVSRHGLPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H  + F     + + ++ +       +     S L  ++  +++   + G GI
Sbjct: 180 TLDDLRTHRAVNFFTGSNRKLLEWTFRPH-GETVSVKLASSLLTDNSEALLSCGLAGLGI 238

Query: 242 ------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 AL P     D+  L+ ++  V      V   YP     + K++AF +++  
Sbjct: 239 VHGLRPALQPSI---DSGQLIELLPGVPAEPKPVSVLYPNRAHLSDKVRAFIDWLTE 292


>gi|300704271|ref|YP_003745874.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299071935|emb|CBJ43264.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 309

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 131/290 (45%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS
Sbjct: 4   FKQLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + + L   +  +    VK SG LR+      G+  +   + +FL  +PD+ I
Sbjct: 64  AFLEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL+    P  ++
Sbjct: 124 TLDLGDRIVDLVNEGFDCAIRLGD-LPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  HN + FG           W+   D      ++   ++      + ++C+ G G+A 
Sbjct: 183 HLAGHNCLAFG---ASANVQRGWVFQQDGKTVTVKVGGTMECTDGAVLREWCLQGHGLAW 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 240 RSWWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289


>gi|262274008|ref|ZP_06051820.1| transcriptional regulator LysR family [Grimontia hollisae CIP
           101886]
 gi|262221818|gb|EEY73131.1| transcriptional regulator LysR family [Grimontia hollisae CIP
           101886]
          Length = 298

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 135/299 (45%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ V   VA    FT AAE L +S+S +S+QI  LE  +G++L  R+ R + LT
Sbjct: 1   MLDNLQQMVVLATVAHEQHFTRAAEYLGISKSQVSKQIRFLEARLGVQLVQRNTRSVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   ++  +  +     + SG+LR+      G   +   L  F   +P
Sbjct: 61  EAGKQYAAFGHQIVETMQNAEAVVAGFRNEVSGRLRVGIAQSFGNAQITQLLSSFQAQFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++++ L +   ++  +  DC + + + + S  ++ RKL        A+P Y++    P
Sbjct: 121 ELELEVHLFDHCPNLVENGFDCWLVIHE-VPSEGMVTRKLGDCQFKLVASPSYIEKNGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN IT+ ++  + + D                   ++N+  ++++    G G
Sbjct: 180 KHPSDLREHNCITYQNV--QHIYDQWSFQRDGSEQSVTVRGSYRINNAPAVLEAAKSGVG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA +  Y++ D   N  L  +M+D        VY  YP       K++ F +F+    R
Sbjct: 238 IAYIATYLLNDEIKNGELNVLMKDWKPTMKLPVYAVYPRREYLAPKVRHFVSFLSENIR 296


>gi|221212802|ref|ZP_03585778.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221167015|gb|EED99485.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 313

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 124/299 (41%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 12  PLDLLDVGLFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 72  DGEIFMARAEALLSAADAARASVGRGRTEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPS 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  D AIRL   ++ S+L+ RKL T       +P YL     P 
Sbjct: 132 VSLDLRLSDEIVDLVDEGYDVAIRLGA-LKDSTLVARKLATNRRVLCCSPAYLAERGTPR 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +  GD            AT   P        L  ++  +I +  V G GI
Sbjct: 191 HPADLAQHECVILGDQRDWS------FATPQGPFTVRVGGRLVASNGEAIREALVDGFGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     +  LV +++D        V+  YP       K  AF  F+     D
Sbjct: 245 AIKSTWDVGPLLASGALVTVLDDYPFAEDIAVWAVYPSRAHVPLKTLAFIAFLAEHFGD 303


>gi|222110252|ref|YP_002552516.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221729696|gb|ACM32516.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 304

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 136/288 (47%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F ++AR  S +  A +L +S ++ S++++ +E+ +G++L  R  R L LT +G+  
Sbjct: 10  EMAFFSLLARWASLSATARELGISTAAASKRLAQMESRLGVQLVSRTTRRLHLTAEGNTY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +  +++  +  + +   +P G LR+  T+  G++ +   +  F+  +P IQ+QL
Sbjct: 70  LRHARRILAEIDAMEQLVSDMQAEPQGLLRVNATLGFGRSHIAPLVPAFVRRHPQIQLQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +   ++ D  D  IR  +P   + +I R+L        AAP YL     P    EL
Sbjct: 130 QLSVQPPPLADDGFDVCIRFGEP-PDARVIARRLAPNRRLLCAAPAYLARRGTPTRPAEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ I   D+         W     R     R+   L  N     + + + G GI +  
Sbjct: 189 PQHDCI---DIRQGDDAHGVWRFNGHRKQETVRLRNHLSTNDGEIAVNWALAGMGIVMRA 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ +     +  LV+++ D  TP   ++  YP+    T ++KAF +F+
Sbjct: 246 EWDIARYLRSGRLVQVLRDYDTPPADIHAVYPQRHAATARVKAFVDFV 293


>gi|16766893|ref|NP_462508.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16422169|gb|AAL22467.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|261248760|emb|CBG26610.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267995844|gb|ACY90729.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160146|emb|CBW19666.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914631|dbj|BAJ38605.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|323131967|gb|ADX19397.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990458|gb|AEF09441.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 299

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 6   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 66  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 126 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 185 ASHAMVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         V   YP     + ++  F  ++    ++
Sbjct: 244 IAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKE 296


>gi|319796268|ref|YP_004157908.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598731|gb|ADU39797.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 296

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F  +A  GS T AAE L  S  ++ R ++ LE  +G++LF+R  R L+LTE
Sbjct: 1   MDRFKAMQTFVQIADQGSMTRAAESLGTSLPAVVRSLAALEAHLGVRLFHRTTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        EV    +     L   + +P+G+L I   +  G   +   +  F+  Y  
Sbjct: 61  EGRHYLPSAREVLLAADAADRALNAEAREPAGQLTITAPVLFGHMYVAPAITRFMKRYDK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++  ++L ++ +++  +  D  IR+  P++ SSL+ + L TI      +P YL     P 
Sbjct: 121 VRCSVLLYDRAVNLLEENIDVGIRIS-PLEDSSLVAQTLGTIRRVVAVSPDYLARHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL+    +      P   +         + I     + L+ N     ++ C  G G 
Sbjct: 180 HPRELNGAPCVRGRIDAPPQWQ----FHEAGKTISVTPSNRLEFNHLAPAVEACAAGMGF 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +   Y V        L  ++ED   P   V   YP A     + +AF +++
Sbjct: 236 GIFFSYQVLPYVAQGRLAIVLEDFEPPPRPVSVIYPNARLLPARTRAFIDWM 287


>gi|161616662|ref|YP_001590627.1| hypothetical protein SPAB_04479 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194448392|ref|YP_002047636.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197265402|ref|ZP_03165476.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205357602|ref|ZP_02571927.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205359036|ref|ZP_02666698.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|161366026|gb|ABX69794.1| hypothetical protein SPAB_04479 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406696|gb|ACF66915.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197243657|gb|EDY26277.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205330685|gb|EDZ17449.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205338714|gb|EDZ25478.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|321226658|gb|EFX51708.1| LysR family transcriptional regulator YhjC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 300

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 7   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 67  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 127 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 186 ASHAMVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         V   YP     + ++  F  ++    ++
Sbjct: 245 IAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKE 297


>gi|116048800|ref|YP_792400.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584021|gb|ABJ10036.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 314

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 135/295 (45%), Gaps = 5/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   ++ +R F  VA +GSFT AA++L L+ + +SR ++ LE  +  +L +R  R + LT
Sbjct: 1   MDILFN-MRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   +E  + E  ++  +PSG L++     +GQ+ L   + ++   YP
Sbjct: 60  EAGQRYLMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++   L L N+  DI  +  D ++ +   +  S  + + +   +    A+P Y+     P
Sbjct: 120 EVGFDLTLANRITDILDEGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  +   + +   ++ + +     + +     +  QVN+  ++ +  V G G
Sbjct: 180 RLPAELSAHRCLRLVNSVM-SLDRWLFDGPDGQELACINQTHFQVNTADAMTEAVVSGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP Y   +   + +LVR++         VY  YP       K++ +  F+  
Sbjct: 239 IGALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFLRE 293


>gi|218661983|ref|ZP_03517913.1| LysR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 297

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 12/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+ + L +F     SGSFT AA  L + +S++S++++ LE  +G++L  R +R   LTE 
Sbjct: 4   FNLNDLHLFVQAVDSGSFTAAARHLGMPKSTVSKRVAELERRLGVRLIQRTSRSFALTEL 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +       + E  +  ++    +P+G +R+  ++   Q  L  +L      YP +
Sbjct: 64  GREFFQHAQASVIEAEMAEGIVRRHLAEPAGSVRLTASVPTAQFTLTEHLPALAARYPKL 123

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ + + ++ +DI  +  D A+R  R P+  S+L+QRKL +      A+P Y+    +P 
Sbjct: 124 RLSVHVTDRFVDIVQEGFDIALRSHRAPLPDSALVQRKLASHPFFILASPDYISAHGQPR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS 239
             +EL +H  I         + +  W  T D          S +  +    +M+  V G 
Sbjct: 184 RPEELAEHATIM------TSLTENQWRLTSDGGDEAVVTLQSVMAADEPYVLMETAVAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  LP  + +       LVR++ D    S       P        ++A  +F+  + 
Sbjct: 238 GITCLPTSVCRKALAEGRLVRVLPDWTAGSIETTILMPHRRGQLPAVRAVVDFLEERL 295


>gi|16119440|ref|NP_396146.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15161974|gb|AAK90587.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 313

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 4/286 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA +GSF  AA+ L+L +SS+S+ +  LE+ +G KL  R  R +T+T +G   
Sbjct: 6   AIRTFVRVAEAGSFAKAADTLNLPRSSVSKLVQDLESHLGTKLVERTTRSVTMTTEGIAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H    ++   L+     +  S   P GKLR+     L   +L   L +F   YPDI + L
Sbjct: 66  HERALKLLADLDDMDGTVAGSRSAPKGKLRVDIGSVLANQILIPALPDFQHQYPDIDLML 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  DC IR    +  SS+  RKL  +     A+P YL   + P    ++
Sbjct: 126 GVSDRPADLISEGIDCVIR-GGALGDSSMKARKLCELDYVICASPTYLDGLQLPERPDDI 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +K  ++++            +    +R    P    + VN   + +   + G GI     
Sbjct: 185 EKFRIVSYFSASSGKRFPLRFQRGAERSEYFPTSGGVSVNESTAHLNALLSGLGIGQSFG 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           ++ + +     LV ++ D    +  ++  YP       +L+AF  +
Sbjct: 245 FLARPHFKSGALVELLPDWTPDNHPLHLVYPADRFPNPRLRAFTEW 290


>gi|221198951|ref|ZP_03571996.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205211|ref|ZP_03578227.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175002|gb|EEE07433.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181402|gb|EEE13804.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 300

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   LRVF +VAR  SF+ AA+ L +S S +S+++  LET +GI+L +R  R +++T+ G
Sbjct: 9   ELGDLRVFCMVARKASFSAAADALAMSSSYVSKRVGMLETSLGIRLLHRSTRRVSVTDAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++    ++   +E    ++  +   P G LR++++   G+N++   L E    +P + 
Sbjct: 69  ERVYAWAEKILDDVEHLVEDVSSTRRVPRGTLRVSSSFGFGRNVVAPALAELSDRHPQLN 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I +  LI ++L T H    A+P YL     P  +
Sbjct: 129 VRLELFDRIVDVAAEGFDVDIRIGDEI-AGHLIAKQLATNHRVLCASPDYLARHGTPKQV 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +   +           L      +       L  N     +Q+ + G GI L
Sbjct: 188 GDLASHACLAIKERDHPFGVWR--LDARGETVSVQVTGPLSSNHGEVAVQWALAGRGIVL 245

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + V+   D   L R++  V  P+  V+  YP  L  + K++A   F+  + 
Sbjct: 246 RSVWDVQPLLDAGRLQRVLPGVTQPA-NVWAVYPARLAQSAKVRACVEFLKDRL 298


>gi|254506674|ref|ZP_05118814.1| transcriptional regulator, LysR family protein [Vibrio
           parahaemolyticus 16]
 gi|219550255|gb|EED27240.1| transcriptional regulator, LysR family protein [Vibrio
           parahaemolyticus 16]
          Length = 312

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 134/294 (45%), Gaps = 10/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +++  +F  VA+  SF+ AA+QL +S+S +S QI  LE E+   L  R  R + LT
Sbjct: 4   MHKRFERYALFSEVAKQLSFSKAADQLGISRSYLSSQIQELEQELETSLLIRSTRSVRLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G K+      V   +   + EL  +  + +G LRI          L    +EF  L+P
Sbjct: 64  SAGEKILTKMQGVNASILQLEKELDHTKSEVTGALRITAPTIFSHRFLINICREFQALHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+  L +     D++    D AIR        +++ ++L++      A+P YL+    P
Sbjct: 124 QIEFDLDIGYTREDLTKSNFDLAIRATNS-PPENMVAKRLMSYQHICCASPAYLEQNGRP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +HN ++   L      D N    +D          + +N  L +++    G G
Sbjct: 183 QHPEDLKQHNCLSDPHLTHWSFSDGNNTIVIDTD------GDMFINDNLLLLEAAKQGKG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +PDY+V+   DN  L+RI++        +Y  YP  L+ + KL AF  F+ 
Sbjct: 237 VIKMPDYLVQPAIDNGELIRILDGYFIVESGIYLIYPPELRGSTKLSAFTEFVV 290


>gi|161524666|ref|YP_001579678.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350577|ref|YP_001946205.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160342095|gb|ABX15181.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189334599|dbj|BAG43669.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 313

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 124/299 (41%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 12  PLDLLDVGLFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 72  DGEIFMARAEALLSAADAARASVGRGRTEPYGRLKVSMSSSFGRQHVTPVIPAFLRRYPS 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  D AIRL   ++ S+L+ RKL T       +P YL     P 
Sbjct: 132 VSLDLRLSDEIVDLVDEGYDVAIRLGA-LKDSTLVARKLATNRRVLCCSPAYLAERGTPR 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +  GD            AT   P        L  ++  +I +  V G GI
Sbjct: 191 HPADLAQHECVILGDQRDWS------FATPQGPFTVRVGGRLVASNGEAIREALVDGFGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     +  LV +++D        V+  YP       K  AF  F+     D
Sbjct: 245 AIKSTWDVGPLLASGALVTVLDDYPFAEDIAVWAVYPSRAHVPLKTLAFIAFLAEHFGD 303


>gi|269966021|ref|ZP_06180113.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|269829417|gb|EEZ83659.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 291

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +   S +  +L T   E+ +     SGK++I+   +L + ++      F+  YPDI
Sbjct: 61  GERFYHECSPLLQRLTTAAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNSFMKQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L  +N    +     D   R+  P + SSLI RK+  +     A+P YL +   P  
Sbjct: 121 NIELTTENNADKLDPTEWDVIFRVG-PQRDSSLIARKIGEVKDILVASPDYLTSNPAPHH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H+L+         +  +  + +    +        Q N+   +   C  G GI 
Sbjct: 180 AEELSNHSLL-----KGYPLIKWTLINSKGESVVNVDRGRFQANALNVVRSACSEGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD ++K   ++ +LVR++ D       +Y  Y        K++ F +F+  
Sbjct: 235 LMPDVMIKEYIESGDLVRVLPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 287


>gi|222087319|ref|YP_002545856.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724767|gb|ACM27923.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 291

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 128/289 (44%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSF+ AA+   +S +   +QI  +E  +G +L +R  R   LTE G   +
Sbjct: 1   MAMFVRVVEHGSFSAAADAAGVSPTMAGKQIRAIEAHLGARLLHRTTRRQQLTEIGRLYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   ++       E   +P G LRI + +  G + L   L ++L +YP + + ++
Sbjct: 61  ERCKQVLADVQLADASASELQAEPRGLLRIVSPVTFGSHRLMPALSDYLAMYPAVSVDVM 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN   D+S +  + AIR+   +    L+ R L        A+  YL+    P+  ++L 
Sbjct: 121 LDNGVPDLSREGCELAIRIGS-VTEVDLVARPLQPYRRIMAASASYLERRGTPVHPRDLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ +           D   L   D          L  ++  ++    + G+GI L P+ 
Sbjct: 180 AHDCLGLSY---WRHRDQWHLFGPDGEWRSDVSGRLSADNGDALRVAALNGAGIVLQPEV 236

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ D+     LV+++ +    +  +Y  Y    + T KL++  +F+  +
Sbjct: 237 MLADDLARGRLVQVLPEWTPVASPMYLLYAVDRRPTAKLRSMIDFLLKR 285


>gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans]
 gi|133738827|emb|CAL61874.1| putative Bacterial regulatory protein, LysR family [Herminiimonas
           arsenicoxydans]
          Length = 293

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D L+ F  V  SG+   AA+ L  + S++SR +S LE ++   L  R  R + LT
Sbjct: 1   MDINSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    +    +   ++  +  ++    +PSG+LRI        + +  ++ EF  LYP
Sbjct: 61  DEGRLFLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  +++  D+     D AIR+   +Q S+L  R L    +H  A+P YL+    P
Sbjct: 121 QITLELTSNDQVADLLEHRTDIAIRIGN-LQDSTLHARALTANPLHLLASPDYLQRHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L  H L+ F            W        G      L  +S  ++    + G G
Sbjct: 180 TTPEQLAGHQLLGFLQFESGN----TWPIRHAGGEGLTVTPALFASSGETLRALALHGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L DY+ +D+     LVRI+E+  T     ++  Y    + + ++  F  F+  K 
Sbjct: 236 IASLADYMTRDDIAAGRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCFLEFLQQKL 293


>gi|242237911|ref|YP_002986092.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242129968|gb|ACS84270.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 297

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 138/292 (47%), Gaps = 9/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +  F     SGSF  A+ +L +S S++ + ++ LE+ +G++L  R  R L+LT++G
Sbjct: 6   SLSGMMAFVKAVESGSFASASARLGISASAVGKSVARLESTLGVRLLNRSTRQLSLTDEG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   LE TQ  L + +  P+G+LRI+    +G  +L   L +F+  YPDI+
Sbjct: 66  QLFYERARRIAVDLEETQFALAQLTGNPAGRLRISLP-AIGYRMLLPCLPQFVSHYPDIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ +D+  +  D AIR    ++ S L  R+L +  +   AAP YL+    P + 
Sbjct: 125 LDLDFTDRLVDVIGEGVDVAIR-SGTLEDSQLRSRRLGSYRLLLVAAPDYLQRYGAPTTP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L +H  + +       +  ++        + E     L  ++  + +   + G GIA 
Sbjct: 184 QQLSQHRCLHYRFSRTGQLMQWDIPGVAMAALSEK----LVFSNLEAQLSATIQGLGIAY 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +PD+ V+    +  L  ++    T        +P+      KL+AF +F+  
Sbjct: 240 VPDFAVRQELQDGRLTALLTAHTTTGGHFSLLWPDNRHMLPKLRAFIDFLCE 291


>gi|70734267|ref|YP_257907.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68348566|gb|AAY96172.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 303

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V   GS + AAEQL  + S++SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQVFVCVIECGSISAAAEQLAQTPSAVSRSLSRLEAKLDTTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  +++  +  L      PSG+LRI        + +   + EF  LYP
Sbjct: 61  EEGRYFFEQAKLILDQMDELEERLSSRQRNPSGRLRINAASPFMLHAIVPYVAEFRSLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ++L  ++  ID+     D AIR+   +  S+L  R L    +H  A+P YL     P
Sbjct: 121 DIQLELNSNDLIIDLLEQSTDIAIRIG-VLADSTLHARSLGCSPLHILASPDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL  H L+ F             +   DR   +P IS    +S  ++    + G G
Sbjct: 180 QSVAELAGHTLLGFTQTETLNHWPLRHV-HGDRWQIQPGISA---SSGETLRHLALEGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L  ++  D+     L  ++    +     +   Y    +   +++ F +FI  K  D
Sbjct: 236 IACLSHFMTIDDIRAGRLQPVLASFNSGYRQPINAVYYRNSQLALRIQCFLDFIQGKLAD 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|330809547|ref|YP_004354009.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377655|gb|AEA69005.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 304

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 133/296 (44%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V RSGSF  AA +L +  +++SR++  LE ++  +L  R  R LTLT  
Sbjct: 2   LDLNDVALFVQVVRSGSFAEAARRLGMPSNTVSRRVQQLEAQLESRLLQRSTRKLTLTHA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    +    L     EL   S +PSG +RIA   D         + +FL  +P +
Sbjct: 62  GQGFYERCVDAVDGLMDAGQELMMGSEEPSGLVRIAAMADFFDFFPMEWVADFLAAHPRV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPL 181
           Q+  +L +  +D+  D  D A R   P+Q S  + R+L+        A+P Y+     PL
Sbjct: 122 QLDFVLSDARVDLIADRIDVAFR-GGPLQDSGYVGRQLLKNDGDGMVASPAYIAARGTPL 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+Q+L  H+ ++FG   P  M  + ++            S    N+  ++ +  V G GI
Sbjct: 181 SLQDLAHHDGVSFGQ--PGGMAHWRFVGPDGIEEQVQIASRFHANTAQALRRATVAGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+LP  +     +   LVR++       F +   YP   +    + AF   +  K 
Sbjct: 239 AVLPGALSSLDLEAGRLVRVLPQYRRIGFGLNVLYPSRRQLPLAVSAFIGLVMEKL 294


>gi|73541136|ref|YP_295656.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72118549|gb|AAZ60812.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 315

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 127/292 (43%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ A+    + +S +SR+I+ LE ++G++L  R  R + +T  G
Sbjct: 3   DLNDLSLFAQVVEHGSFSAASRATGIPKSRLSRRIAQLERDLGVQLLRRTTRQVRVTPLG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E     ++++  +P G LR++  + + Q LL   +  F+   P ++
Sbjct: 63  ESYYERCRAMLKEAEAAHEVIEQARDQPGGTLRVSCPVAIAQILLAPAIGHFMRANPAVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   N+ +D+  +  D ++R+R  ++ SSL  R      +   A+P  L +   P + 
Sbjct: 123 IELEATNRRVDVIGEGYDLSLRVRDVLEDSSLAVRTFGESQLMLVASPGLLDSIGRPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q LD       G         +         I       L  + +  + +  + G G+A+
Sbjct: 183 QALDGMP--GVGQKPHDGKHVWVLGCKSGETIQIAYDPRLVTDEFSLLREAAIAGIGVAM 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP    +   D   L  ++     P  T++  +P     T  ++ F +F+  
Sbjct: 241 LPRMYCRDAIDAGELELLLPQWEMPVGTLHAVFPSRKGVTPAVRRFLDFLSE 292


>gi|291616054|ref|YP_003518796.1| YafC [Pantoea ananatis LMG 20103]
 gi|291151084|gb|ADD75668.1| YafC [Pantoea ananatis LMG 20103]
          Length = 320

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF   A  GSF  AAEQL LS   +++ I+ LET +G  L  R  R  +LT+
Sbjct: 19  MDRLTSMNVFVKAAEVGSFAAAAEQLRLSPQMVAKHIASLETRLGTVLLNRTTRRQSLTD 78

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  + E       E    PSG L+++  +  G   L   +  +L  Y +
Sbjct: 79  VGRNYYERCKVVLAEAEEADAIAMEMKSTPSGILKVSAPLTFGAFTLAPFITRYLARYTE 138

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L L ++ ++   +  +  IR+ + +  SSL+   L    + A A+P YL     P 
Sbjct: 139 IQVDLELSDRLVEPFEEGYEVVIRIGE-LTDSSLVAYPLKPYRLIACASPTYLARMGMPA 197

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + +G   P     +++         +P+    + N + +++   + G G+
Sbjct: 198 TPADLMDHVCLVYGIWSPSMPCRWHFQRAGRVEEVKPQ-GRFRSNDWKALLHAALEGHGV 256

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P  ++ +      L++I+ +   P+  +    P   + T K+++F + I
Sbjct: 257 TLGPADVLNEEIEKGRLIQILPEYDGPARPMNMLIPTGRRQTVKIRSFVDAI 308


>gi|262377558|ref|ZP_06070779.1| transcriptional regulator [Acinetobacter lwoffii SH145]
 gi|262307445|gb|EEY88587.1| transcriptional regulator [Acinetobacter lwoffii SH145]
          Length = 296

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 140/300 (46%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D+L VF  +A  GS    AEQL+ + S+ISR +  LE ++ +KL  R  R L LT
Sbjct: 1   MKSTFDELLVFVTIADCGSIVKTAEQLNQTTSAISRTLQRLEKKLNVKLIERTTRSLNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G        ++   L   +  L     +P+G ++I +      +++   + EF+  YP
Sbjct: 61  YDGKIFLERARKLLSDLNEAEELLINPGTEPTGLIKIDSATPFVLHVIIPLIPEFIERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I+L   +  ID+     D AIR    ++ SSL  + L    ++  A+  YLK    P
Sbjct: 121 KISIELTSHDHVIDLLEHKIDVAIRFGD-LEDSSLYAKLLYKSRLYIVASAEYLKKNNLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI EL++H L+ F   +       NW   ++  + +   S +  ++  S+ Q  + G G
Sbjct: 180 KSIIELNQHRLLGFSHPLHLN----NWPIYINDQLYKTSPS-ITASNGESVRQLALQGVG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++++  +     L+ + ED I      ++  Y +      +++ F ++++ K + 
Sbjct: 235 IACLSEFLILKDINEGKLIALFEDEIKIHEQKIHAVYYKKNYIPKRVRLFIDYLYEKLQQ 294


>gi|270260886|ref|ZP_06189159.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044370|gb|EFA17461.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 297

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 139/301 (46%), Gaps = 10/301 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +RVF  V  +G FT AA+ L + ++++++ I  LE  +  KLF R  R +++T
Sbjct: 1   MDHHLLAIRVFNRVVETGGFTRAADSLRMPKATVTKLIQNLEDHLQTKLFQRTTRSVSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ T +   +LE  +  + ES   P G LRI       + LL   L +F+  YP
Sbjct: 61  PEGECYYQRTVKWLAELEQMEGCMTESQSAPQGVLRIDAGGSTARQLLVPALPDFIERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQI L + ++ ID+  D ADC IR   P+  SSLI R+L  +     A P YL     P
Sbjct: 121 QIQIDLGVSDRLIDLINDSADCVIR-SGPLADSSLIARRLFELEWVTCATPAYLARYGTP 179

Query: 181 LSIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVL 237
               +L+  + L  +   +   ++  +++        + R  +S  + N+ L+     + 
Sbjct: 180 KHPCDLELGYPLAHYRHALNDRIQPLHFVDRGKEIDIQHRYHVSVNESNALLAAALAGLG 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              I     ++ +   DN  LV ++ D   PS  +Y  YP     + KL+ F ++     
Sbjct: 240 ---IIQTFRFMAQPHLDNGELVSLLHDWQPPSEQMYVVYPSNRHLSAKLRVFIDWAVEAF 296

Query: 295 R 295
           +
Sbjct: 297 K 297


>gi|121593532|ref|YP_985428.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120605612|gb|ABM41352.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 304

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 136/288 (47%), Gaps = 8/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F ++AR  S +  A +L +S ++ S++++ +E+ +G++L  R  R L LT +G+  
Sbjct: 10  EMAFFSLLARWASLSATARELGISTAAASKRLAQMESRLGVQLVSRTTRRLHLTAEGNTY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +  +++  +  + +   +P G LR+  T+  G++ +   +  F+  +P IQ+QL
Sbjct: 70  LQHARRILAEIDAMEQLVSDMQAEPQGLLRVNATLGFGRSHIAPLVPAFVRRHPQIQLQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  +   ++ D  D  IR  +P   + +I R+L        AAP YL     P    EL
Sbjct: 130 QLSVQPPPLADDGFDVCIRFGEP-PDARVIARRLAPNRRLLCAAPAYLARRGTPTRPAEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ I   D+         W     R     R+   L  N     + + + G GI +  
Sbjct: 189 PQHDCI---DIRQGDDAHGVWRFNGHRKQETVRLRNHLSTNDGEIAVSWALAGMGIVMRA 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ +     +  LV+++ D  TP   ++  YP+    T ++KAF +F+
Sbjct: 246 EWDIARYLRSGRLVQVLRDYDTPPADIHAVYPQRHAATARVKAFVDFV 293


>gi|187924401|ref|YP_001896043.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715595|gb|ACD16819.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 345

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 137/291 (47%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSF  A E+L + +S++SR +  LE ++  +LF R  R   LT +G +    
Sbjct: 35  AFMAVASEGSFAKAGERLGVGRSAVSRNVQKLEAQLSTRLFLRTTRNTQLTREGQRFFEN 94

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +    L     ++ E     P G +RI++T+  G+ ++   L++F+  YPDI I L+L
Sbjct: 95  CHQGVSHLVEAMNDMLELREGPPRGLVRISSTVGFGRKVVAPLLEKFVKAYPDIAIDLLL 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++  D + +  D A R  + I+ SS+I R+L+ + M   AAP Y      P +++EL +
Sbjct: 155 DDRPTDFTSERIDVAFRDGR-IEDSSIIARQLIPMQMALCAAPSYAAAHGLPHTLEELCR 213

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H+ I F     +    F W   +D  + +    + L  N    ++   + GSGIA +  Y
Sbjct: 214 HDCINFRFSSGRV---FEWEFKLDGRVRKYLPTAHLTFNDADLVLHAVLQGSGIAQMAGY 270

Query: 248 IVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V ++     LV  +          Y CY        + + F +F+  + R
Sbjct: 271 QVSNHIVAKELVVALSAYAPDDRGHYICYLNRQHLPTRTRVFIDFMAAQVR 321


>gi|257484260|ref|ZP_05638301.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331008330|gb|EGH88386.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 299

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 122/288 (42%), Gaps = 8/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   SFT AA +L  SQS++S +I  LE  +G++L  R  R ++ T  G +L 
Sbjct: 9   LMAFVAVAEERSFTRAAGRLGTSQSALSHKIRRLEARLGVRLLTRTTRSVSPTAAGERLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    +      L +   KP+G +RI T   + + +L   L  +L  YPDI++++ 
Sbjct: 69  ETLKPALADITAQLESLTDVRDKPAGSIRITTADHVAETILWPALNRWLPKYPDIEVEIT 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLSIQEL 186
           +DN  +DI  +  D  IRL + +    +I   +  +       +P YL     P    +L
Sbjct: 129 VDNGFVDIVAERFDAGIRLGENL-DKDMIALPIGPMERCVIVGSPSYLAKYPVPTHPDQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  I      P       W    D    + R+S  +  N    I++  V G G+A L 
Sbjct: 188 VNHLCI--NRRFPSLNGKSAWHFEKDGQATQVRVSGQVAFNRPEMILEAAVAGYGLACLL 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           D  V    +   LVR+++D        Y  YP   +NT   +     +
Sbjct: 246 DSQVIHQVEAGRLVRVLDDWCPAFPGYYLYYPSRRQNTSAFQLLVEAL 293


>gi|148557161|ref|YP_001264743.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148502351|gb|ABQ70605.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 312

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 130/304 (42%), Gaps = 12/304 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   LR F  V  +GSF+ A  +L++  S+IS+ +S LE ++  +L  R  + L+++
Sbjct: 12  MLDNLSALRAFVAVVEAGSFSEAGYRLNVMPSTISKHVSFLEEKIHGQLIVRSTKHLSVS 71

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +     +  ++E T+ E+ E  ++P GKLRI          L   +  FL  YP
Sbjct: 72  ELGRRFYDRCLIILKEVEETEAEMLEYQMEPQGKLRITMGPSFAGYHLPRLIPSFLERYP 131

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +   +  + +D+     D A+R+   ++   LI  KL         +P Y++    P
Sbjct: 132 KISLDFRVTPELVDLIDHSIDVAVRISSNLE-PGLIAVKLAPNIRSVCVSPAYVEKFGMP 190

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              ++L+ HN +    L  +      W    D       +S  L VN      Q  + G 
Sbjct: 191 AEPRDLESHNCL----LTNEASSTAKWRLLQDGVENVVHVSGNLVVNHGDIYKQAILDGV 246

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR- 295
           GI  L  Y+V     +  L+ +  D    +  +Y  YP+      K + F + +    R 
Sbjct: 247 GIGHLSRYLVYQEINDGRLIELFPDRGVINSFIYVVYPQRRNLPLKTRVFIDHLRDAFRG 306

Query: 296 --DW 297
             +W
Sbjct: 307 TPEW 310


>gi|152994181|ref|YP_001339016.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835105|gb|ABR69081.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 301

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 133/291 (45%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA++GS + AA +L L+ S++SR ++ +E  +G++L  R  R L LT +G   
Sbjct: 11  EMETFLTVAKTGSLSGAARELGLTPSAVSRMMTRIEKRLGVRLLVRSTRKLYLTSEGESY 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE T+  + +    PSG ++++T     +  +    KEFL  YP+I+I++
Sbjct: 71  ALAARRILKDLEETERAIADR-ASPSGLIKVSTPTAYSRLTMIPLYKEFLQRYPNIKIEV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +K  +++  + D AIR   P+  S+L  R+L        A P+YL     P +  +L
Sbjct: 130 EVSDKISNVADGHIDVAIRFG-PLPDSNLTARRLGETGRTIVATPNYLAQAGSPKTPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
              N + F     +    F            P    +  N+  ++++  +   GI  + +
Sbjct: 189 QHFNCLDFSFQRIEPGWPFR---ENGEDYILPIQGNMTSNNGETLVELVMADIGITRVGN 245

Query: 247 YIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK 293
           + ++    +  L+ ++ED        ++  +        +++ F +++  K
Sbjct: 246 FHIQQALASGQLIPLLEDFNPQDKEVIHAVFIGGQHMPARVRVFVDYLVEK 296


>gi|221070000|ref|ZP_03546105.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|264680678|ref|YP_003280588.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|299532758|ref|ZP_07046145.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|220715023|gb|EED70391.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|262211194|gb|ACY35292.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
 gi|298718982|gb|EFI59952.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 311

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D       F  VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R ++LT 
Sbjct: 1   MDKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLMVRTTRRISLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +   +   +  +    VK +G LRI      G+  +   +  F  L+PD
Sbjct: 61  EGSAFLEDCQRLLSDVCNAEASVSAGGVKATGHLRITAPAGFGRRHVAPLVPRFRDLHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D++ +  DCA+R+   +  S+L+  ++        A P YL+    P 
Sbjct: 121 VTISLNLSDRVVDLAGEGFDCAVRVGD-LPDSALVSVRIADNRRLCVATPGYLERRGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
              EL +H+ +T      +       +   +    E         L  +    +  +C+ 
Sbjct: 180 HPSELTQHDCLTLSSDASQTRGWAFRIPHPESGTSEVVHFKPGGPLDCSDGQVLHDWCLG 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIA    + V+       LV ++E+   P   ++  +P+      +++ + +++
Sbjct: 240 GWGIAWRSTWEVEAEIAAGRLVPVLEEFAAPPNGIFVVFPQRKHMPLRVRMWIDYL 295


>gi|258626245|ref|ZP_05721092.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258581297|gb|EEW06199.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
          Length = 326

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 144/293 (49%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   D L +F +V  +GS+T  +++  +  ++I+R+I  LE  + ++L  RHAR LTLTE
Sbjct: 35  TMKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTE 94

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + ++  S +  +L +   E+ +     SG++RI+   +L + ++      F+  YPD
Sbjct: 95  AGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPD 154

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L++ N+  D+     D   R+  P + SSLI RK+  +     A+P YL N  +P 
Sbjct: 155 IHIELMMSNQADDLDPTEWDVIFRVG-PQRDSSLIARKIGEVKDILVASPTYLANHPQPT 213

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H L+         +  +    +    +        Q ++   +   C  G GI
Sbjct: 214 HAEELHQHQLL-----KGYPLLKWQLTNSQGETVVNTDRGRFQASALNVVRSACSEGLGI 268

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L+PD +++   D+ +L++++ D  +    +Y  Y        K++ F +F+ 
Sbjct: 269 TLMPDVMLREYLDDGSLIQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 321


>gi|226952935|ref|ZP_03823399.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|294650511|ref|ZP_06727870.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226836256|gb|EEH68639.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|292823654|gb|EFF82498.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 306

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 139/298 (46%), Gaps = 6/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE ++G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEEQLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S +P G ++++  +D+ QN +   L  FL  YP
Sbjct: 61  DIGMDVYRHAQVMMNAAQAAHDVVNHLSSEPRGVIKVSVPVDIAQNQMAKILPTFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++++Q+++ N+ +D+  +  D A+R+R  + +  +L+ R+  TI    +A+  YL     
Sbjct: 121 EVRVQMLVSNRRVDVINEGIDLALRVRSNLDEDPNLVLRQFETIEQRLFASQAYLNEFGH 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + ++L  H +I+  +      + F      +          +  ++ L + +      
Sbjct: 181 VTTPEQLTDHRIISMSE--DHLDQQFLLSGPNNIQKKIKVNPVIMGSNLLMLTELASQNC 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIALLPD I +   ++  LVR++ +   P    +  YP        ++ F +++  + 
Sbjct: 239 GIALLPDSIAQNFVESGQLVRVLPEWTAPHGIFHAVYPSRRGLLPAVRVFIDYLVEEL 296


>gi|330965855|gb|EGH66115.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 303

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 135/299 (45%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + +F  V RSGSF  AA QL +  +++SR++  LE ++G +L  R  R L LT
Sbjct: 1   MIPDLNDVALFVQVVRSGSFAQAARQLGMPSNTVSRRVQHLEVQLGTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +   +     L +   +L     +PSG++RIA   D         + +FL  YP
Sbjct: 61  QAGEHFYERCTAAVDGLMSAAEQLVSGREEPSGRVRIAAMADFFDFFSMDWVADFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCRE 179
            +Q++ +L ++  D+  D  D A R   P+Q S  + R+L+        A+P YL     
Sbjct: 121 RVQLEFVLSDERADLIADRLDIAFR-GGPLQDSGYVGRQLIEEARDGMVASPAYLATYGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S++ L  H+ +      P  +  +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLESLQAHDCV--SAAYPGGVTTWRMLGPDAKMHDVQIASRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIALLP  +++ +     LV ++      S  ++  YP   +    + AF   +  K R
Sbjct: 238 GIALLPATLIRADLRNGLLVPVLAQYQRTSHGLHVLYPSRQQLPLAVSAFIGLVMEKLR 296


>gi|269960021|ref|ZP_06174398.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835320|gb|EEZ89402.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 293

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 133/296 (44%), Gaps = 15/296 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V   G F+ AAE L +  + +SR +S LE ++G+ L  R  R + LT++G +
Sbjct: 6   DDLEILLTVVDCGGFSAAAEALDVQVARVSRSVSRLEQQLGVSLLNRTTRRVELTDEGRR 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      ++  +  +      P G LR+        + L   +K F   YP I+++
Sbjct: 66  FVEHVRTAMQYIQQAEECILSLGETPQGTLRVDAASPFVFHQLVDLIKPFREAYPQIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    ++  A+P YLK+   P    +
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LSDSTLHARALGKSELYLVASPDYLKHRGIPQKPTD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H++I F +      +  N L     P  EP    L  ++  +I Q  + G+GIA L 
Sbjct: 185 LAHHDIIGFTEP-----KILNKLPLKGAPEIEP---TLLSSNGETIRQLALAGNGIACLS 236

Query: 246 DYIVK---DNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++V+   +   LV I+E     +     +   Y ++   + ++ AF +FI  K +
Sbjct: 237 GFMVRKDMEEGRLVPILESDKITNTGREQINAVYYKSSSVSLRISAFLDFIQPKLK 292


>gi|257141494|ref|ZP_05589756.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 297

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 127/296 (42%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE +  ++L  R  R  T+TE G
Sbjct: 3   DLNDLYYFVKVVEHGGFTQAGRALGVPKSTLSRRIAALEAQYDVRLLQRTTRHFTVTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E  +  ++    +P G + ++    L +  + G +  F+ ++P +Q
Sbjct: 63  REFYDRCLGVLVEAEAAREVIERKHAEPQGIVSLSCPTALLEYRVSGLVARFMAIHPKVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAPH L     P S
Sbjct: 123 VHLEATNRRVDLLSEGIDLALRVRFPPLEDSGLVMRVLGDSPQRLVAAPHLLGGRDLPTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     + +G   P     +  +                 +   ++    + G GIA
Sbjct: 183 PDELAGVPSVDWG---PPRHHLWQLVGPQGVEAQLRHHPRFITDDMHALRDAALHGVGIA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP  +V+D   +  LV ++   +     ++  +P       +++   +F+    +
Sbjct: 240 QLPCMVVEDDLRDGTLVDVLPGWVPKGGVIHAVFPSRRGLLPRVRLLIDFLAAHIQ 295


>gi|170751315|ref|YP_001757575.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657837|gb|ACB26892.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 322

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 126/294 (42%), Gaps = 7/294 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D++   VF  V  +GSF  AA +L LS++++S+ +S LE  +G +LF R +R L L
Sbjct: 11  MRLPDFEAWAVFAKVVETGSFGRAAAELGLSKATVSKAVSRLELRIGARLFNRTSRKLAL 70

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G       + +  + E  +      + +P G +R+A  +  G   +   L  F   Y
Sbjct: 71  TEAGQAAKDGAARILAEGEAAEALATAGAAEPRGLVRLAAPMTFGVMHVAPILPAFFREY 130

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L L +  +D+     D  +R+   +  SSL  R+L  I     A P YL     
Sbjct: 131 PAVSVDLHLSDAVVDLVGGGFDIGLRIAA-LPDSSLRARRLCEIRRSLVATPAYLDRHGR 189

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L +H  + +  L     + + ++              L+ N+  ++      G 
Sbjct: 190 PEHPDDLVRHTCLGYAYL--PTPDRWRFVDGSGAEAVVVPAGQLRANNAEALAPALRAGL 247

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+AL PD+++ D+     L R++     P   ++   P       ++ A    +
Sbjct: 248 GLALQPDFMIWDDLESGRLERVLPAWSPPPIALHLVTPPGDPRPARVTALIAHL 301


>gi|222081054|ref|YP_002540417.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725733|gb|ACM28822.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 300

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  V   G F+ AA +L++S + ++  +  LE  +G++L  R  R ++LTE
Sbjct: 1   MDRLTSLSVFGKVVEHGGFSAAARRLNMSVTMVATHVQSLEERLGVRLLNRTTRKVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  +S++  +LE         +  P G L+I ++  +    L   + E+L LYP 
Sbjct: 61  TGKFYYDRSSQILAELEEADRAAGALTTTPRGTLKIYSSAAIV-RFLLPVIDEYLQLYPS 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + +  + ID+  D  D  IR   P   SSL+ RKL +       +P YL+   EP 
Sbjct: 120 VSMDVDIGERTIDMIEDGHDLVIRTV-PSPDSSLMVRKLTSWRHVLVCSPSYLEEHAEPK 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  HN + +        +++++ A    P         + NS  ++    V G  +
Sbjct: 179 TPAELAAHNCLQYSYY--PYGDEWHFEADNGEPASVRVQGNARSNSAETLRHLAVNGRAV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            L P +IV ++     L+R+M +     FT+   YP       K++ F + +  +  + +
Sbjct: 237 WLAPSFIVSEDLAEGRLIRMMPEFRGVEFTINAIYPNRSHLPTKVRLFIDLLVERFAEHR 296


>gi|194472746|ref|ZP_03078730.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205358569|ref|ZP_02657497.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194459110|gb|EDX47949.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333194|gb|EDZ19958.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 300

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 7   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 67  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 127 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 186 ASHAMVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         V   YP     + ++  F  ++    ++
Sbjct: 245 IAVREALRAGTLIEILPQYHAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKE 297


>gi|193782691|ref|NP_436119.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|193073147|gb|AAK65531.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 291

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 135/293 (46%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VAR+ SF  AAE L +  S++SR++S LE  +G++L +R  R + LTE G 
Sbjct: 4   LNDMALFVEVARARSFRKAAEALGMPNSTLSRRVSELEKAIGLRLLHRTTRKIELTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +  +  +      +L     +PSG LR++  ++L    L   + EF   YP I  
Sbjct: 64  LYYERSKRIVDEARLAHEQLGAMLNQPSGVLRVSLPVNLATFYLTPIIGEFARHYPGITF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  L  + +D+  +  D AIR+ K ++ S LI R +     H YA+P Y++   EP +  
Sbjct: 124 EFDLTPRRVDLVAEPFDVAIRIGK-LEDSGLITRLIGRHSRHLYASPGYIEASGEPATPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H  I    L          +  VD  +         +NS   I    V   GIALL
Sbjct: 183 ELAEHECIGM--LRSPIWSLHQGINKVDVAV----RGRFTLNSVGMIRALAVNHQGIALL 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P+ IV ++     L RI+ +    + +++    E      K + F  F+  + 
Sbjct: 237 PEKIVAEDVAFGRLRRILPEWQGSAVSIFAVT-ETRLIPAKTQRFIEFLSSRL 288


>gi|218888904|ref|YP_002437768.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254243267|ref|ZP_04936589.1| hypothetical protein PA2G_04075 [Pseudomonas aeruginosa 2192]
 gi|126196645|gb|EAZ60708.1| hypothetical protein PA2G_04075 [Pseudomonas aeruginosa 2192]
 gi|218769127|emb|CAW24887.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 312

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G
Sbjct: 3   TLQGMRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD+ 
Sbjct: 63  ERYLERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+
Sbjct: 123 IELTLSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L++H  +   D  P   E + +          P+ +   VN    + Q      GIAL
Sbjct: 183 DDLERHVCLRLQD--PAYPEGWIFADEQGERTVSPQ-NTFMVNVAEVMAQAAKADLGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+      N  L+R++        T+Y  YP       K++ + + +  + 
Sbjct: 240 LPSYVAAAALRNGELLRVLPGHAMHQRTIYALYPSRRYLDAKIRTWVDLLQQEL 293


>gi|117618871|ref|YP_857840.1| LysR family transcriptional activator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560278|gb|ABK37226.1| LysR-family transcriptional activator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 282

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 142/290 (48%), Gaps = 14/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSFT AAE L + +SS+S++IS LE+++G++L  R  R L+LT QG    
Sbjct: 1   MGLFATVVEQGSFTGAAELLGMPKSSVSQKISRLESQLGVRLLQRTTRRLSLTPQGEVYV 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +     +  + +      P+G++RI      G  LL   L EF  LYP++ ++L 
Sbjct: 61  EQCRALLALARSANLAMARLRAAPAGRVRITAPEATGTLLLGRILAEFRALYPEVVLELT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A+R   P++ SSLI R++  +  H  AAP YL     P  + EL 
Sbjct: 121 LCDEQLDLVGEGYDLALR-AAPLKDSSLICRRIGQVPRHLVAAPAYLAAHGMPQQLSELG 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           ++  +    L    +++  W          P+ +CL  NS L++ +  +   GIALLP +
Sbjct: 180 RYACLVHTSLPVWPLQEGGWR---------PQGACL-SNSLLALRELAINEGGIALLPHH 229

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + + +     L +++     P+   Y  YP        L++  +F+  + 
Sbjct: 230 VCEGDLAAGRLQKVLPSHPIPANPFYLIYPSREHLAPALRSLMDFVAERL 279


>gi|300723905|ref|YP_003713216.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
 gi|297630433|emb|CBJ91098.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
          Length = 313

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 12/292 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  +   GS   AAE+L +S++ +SR ++ +E   GI+L +R  R ++LT  G   ++
Sbjct: 8   QVFVTIVEQGSLIAAAERLDMSRAMVSRYLAEMEQWAGIRLLHRTTRKISLTSAGESAYQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            + ++    E   ++    +    G LR++ +  LG + L   + EF  +YP I + L +
Sbjct: 68  RSLKLMELAEEIPVQQFSEAQTLRGLLRVSCSQSLGISALSAAIPEFTRIYPQIAVNLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +NK I++  +  D AIR+   ++  +LI R L T +    AAP YL     P +  +L  
Sbjct: 128 NNKAINLIEERIDLAIRITNNLE-PNLIARPLSTCYSVVCAAPSYLAGKSIPQNPADLAS 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                       P    L  N    +M+  +LG+GIA+ P Y 
Sbjct: 187 HNCLTYNFFGKSLW----LFEKQHEQYSVPVSGTLSANESTVLMEAALLGAGIAMQPYYS 242

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           V     +  LV ++ D    +  +Y  Y         L+A  +F+     DW
Sbjct: 243 VSPYLISGQLVELLPDYQPQAMGIYAIYSSRQNMPVILRALLDFLV----DW 290


>gi|296101458|ref|YP_003611604.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055917|gb|ADF60655.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 299

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 135/298 (45%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF  V   GSFT AA  L  + S +SR +S LE  +G +L  R  R +
Sbjct: 1   MSRKFDYLGDVEVFITVVEHGSFTAAAVVLSTTPSVLSRAVSRLEARLGRQLLQRTTRRV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G          +  L+  + E +      +G++R++     G   L   L  F  
Sbjct: 61  GLTEAGRVYLEQARSAFALLDDAEREGRGQEGDLTGRVRMSVPTTYGHYRLPPLLARFAQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP +Q++L + N+++D+  +  D AIRL + +  S L+ RKL    +   A+P YL   
Sbjct: 121 HYPRVQVELNITNRNVDLIAEGFDLAIRLGQ-LPDSGLVARKLEDAALLLVASPDYLHRM 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVN-SYLSIMQYC 235
             P +++EL +H  + F  ++P+      W+    +R I     S ++++   L ++   
Sbjct: 180 GSPQTLEELHRHTCLPF--IMPRTGRIAPWVFRDEERDIDWLPGSTIEISEDVLGVVSLA 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             G GI    ++IV+D      LV ++  +   S      +    + +   +A  + +
Sbjct: 238 EQGMGICQSYEFIVRDRIQRGQLVEVLPHLRGRSRPFSVLFAPHRRQSAATRAMIDLL 295


>gi|170733835|ref|YP_001765782.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817077|gb|ACA91660.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 320

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 134/293 (45%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
               F ++A+  S + AA  L LS  + ++++  +E  +G++L  R  R ++LT +G   
Sbjct: 10  DFEFFILLAKLRSLSGAARALDLSPPAATKRLGVIEQRLGVRLVNRTTRSVSLTPEGEIY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  S++  ++   + EL      P G LRI  T+  G+  +   + EF   YP +++Q 
Sbjct: 70  LRYASQIVGQVREMEEELSGGKGDPQGLLRINATLGFGRTTIAPLVSEFAKRYPSVEVQF 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+     D AIR  + +  S L  R++++      A+P YL+    P  +++L
Sbjct: 130 EVTDRPVDLVEGAFDMAIRFGE-LPDSRLSARRIMSNRRFLCASPKYLEKYGSPERVEDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  I              W   V+  I   ++   L  N    ++++ + G G+ +  
Sbjct: 189 AAHRCIIHRQNDDAYG---VWRYIVNDHIETIKVKGALSSNDGDIVLRWALEGHGVLIRS 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++ +     +  L  ++ + + PS  +Y  YP     T + +AF +F+  + +
Sbjct: 246 EWDLAKYLQSGRLNLVLPNTVLPSADLYVYYPRQKNQTARARAFIDFLVNRFQ 298


>gi|167033681|ref|YP_001668912.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860169|gb|ABY98576.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 303

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 134/294 (45%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F   A++GSFT AA  L L++S++ + I+ LE  + ++L  R  R L+LT++G 
Sbjct: 6   FGDIAAFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGL 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++   L+  +  + +   KP+G LR+   + LGQ  +   L ++L  +P+++ 
Sbjct: 66  VAFERWRQILDDLDEVESTMAQRRGKPTGTLRLTAPLSLGQRHVLPILDQYLKQWPELRA 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  D A+R+  P + S L+ R +        A+P YL+    P    
Sbjct: 126 DIRFTDRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPAYLEKRGVPQVPG 185

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L  H+ I F      +P        L   + P        L ++S  +++     G G+
Sbjct: 186 DLYGHDKIAFLAGEKAMPWRFHTEAGLHLCEDP------GRLNIDSSEAMLDGARAGFGL 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             LP YI  D+     LV ++     P+  +   YP     + +++ F + +  
Sbjct: 240 IHLPTYITGDDLRAGTLVEVLHGYRPPADPIRIVYPSKRHLSPRVRGFIDLLVA 293


>gi|49085138|gb|AAT51255.1| PA0159 [synthetic construct]
          Length = 313

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 139/296 (46%), Gaps = 7/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE
Sbjct: 1   MDTLQGMRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD
Sbjct: 61  AGERYLERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P 
Sbjct: 121 VVIELTLSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L++H  +   D  P   E + +          P+ +   VN    + Q      GI
Sbjct: 181 SVDDLERHVCLRLQD--PAYPEGWIFADEQGERTVSPQ-NTFMVNVAEVMAQAAKADLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP Y+      N  L+R++        T+Y  YP       K++ + + +  + 
Sbjct: 238 ALLPGYVAAAALRNGELLRVLPGHAMHQRTIYALYPSRRYLDAKIRTWVDLLQQEL 293


>gi|186473422|ref|YP_001860764.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195754|gb|ACC73718.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 305

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 139/289 (48%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S +++SR ++ LE  +G +LF R +R L LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARAMGVSVATVSRGVARLEERLGARLFNRTSRQLALTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    +++Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  HTIAEKAADIYRQAEAAENAAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +DI     D A+R+   +  SSL+ R+L  +     A+P +L+    P   
Sbjct: 126 IDLHLSDATVDIVAQGFDAALRIAA-LPDSSLVARRLCPVSQLVVASPEHLERYGRPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L     +++       +  F   A  + P+    +  L+V +  +++   + G  IA 
Sbjct: 185 RDLVGRPCLSYAYRARSDVWRFVNDAGDEEPVT--PVGPLRVTNSDALLPALLDGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++
Sbjct: 243 LPEFIAGEYLADGRLEAILTDWHLTRGGLYFVTPSARARPAKVTALADY 291


>gi|161526131|ref|YP_001581143.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189349155|ref|YP_001944783.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160343560|gb|ABX16646.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189333177|dbj|BAG42247.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 320

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ +++ 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAERFPDVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YLK    P ++ +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHILLVASPEYLKKHGTPETLADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +             N  A   R         L VN    +    + G+GIALL  
Sbjct: 187 AQHNYLRRDSNASTLDAMLNDAAAASRVALN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIEAGRLVPVLVDAVPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|53717318|ref|YP_106101.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|124382129|ref|YP_001025893.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|254176620|ref|ZP_04883278.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254359047|ref|ZP_04975319.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52423288|gb|AAU46858.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|148028234|gb|EDK86194.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160697662|gb|EDP87632.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|261826665|gb|ABM98992.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 323

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 137/306 (44%), Gaps = 9/306 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EFL 
Sbjct: 61  ALTEAGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTVSQTMLSRLLLEFLR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++Q+ + N+ ID+  D  D A+R+R +P QS++++ R L         AP  L+ 
Sbjct: 121 RYPEVRVQIRVTNRVIDLFEDSIDVALRVRSEPPQSANIVVRPLWRTEQMLVGAPSLLQQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL+  +L   +  T           FN +A             L     ++I +  +
Sbjct: 181 NAPPLAPDDLAGFD--TLDTPSGDGRHVFNLIAPDGTRHTHEHEPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGGGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 ARDWKF 299
             + ++
Sbjct: 299 LDNERY 304


>gi|255592214|ref|XP_002535661.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
 gi|223522375|gb|EEF26724.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
          Length = 298

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 142/296 (47%), Gaps = 9/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  F  V  +GSF++AAE+L  + S +SR IS LE ++G+ L +R  R L LTE+
Sbjct: 2   LDVGALIAFVAVIDTGSFSNAAERLGQTPSGVSRTISRLEQQLGMTLIHRTTRRLDLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS L      +   LE T+ E   +  +P+G +R+        +L+   L +FL  YP +
Sbjct: 62  GSWLLARARRILADLEETESEAALARARPAGLVRVNAATPTLDHLIAPQLADFLDAYPQV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L      +D+  + AD AIR+   +  S+L  R+L    +   AAP YL+    P  
Sbjct: 122 QVELTSGETVVDLIEEKADVAIRIGN-LSDSTLNARRLGRSRIRVLAAPGYLERHGTPQQ 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L KH L+ F  + P  +    W        G   +  +   S  +I    + G+GI 
Sbjct: 181 VDDLAKHRLVGF--VAPTSLN--TWPLRAGGEEGWRAVPHVTATSGETIRHLALQGAGIV 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L D++ + +     LV ++ED   P +  V+  + +      ++KA  +F+  + 
Sbjct: 237 SLSDFLTRADIAAGRLVPVLEDASLPWTQPVWAVFYKQGALAPRVKALVDFLAERL 292


>gi|200387091|ref|ZP_03213703.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199604189|gb|EDZ02734.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 300

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 7   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 67  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 127 CSNDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 186 ASHAMVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         V   YP     + ++  F  ++    ++
Sbjct: 245 IAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKE 297


>gi|184159955|ref|YP_001848294.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213158760|ref|YP_002321182.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|260557799|ref|ZP_05830012.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|301345893|ref|ZP_07226634.1| transcriptional regulator, LysR family protein [Acinetobacter
           baumannii AB056]
 gi|301594538|ref|ZP_07239546.1| transcriptional regulator, LysR family protein [Acinetobacter
           baumannii AB059]
 gi|183211549|gb|ACC58947.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213057920|gb|ACJ42822.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|260408590|gb|EEX01895.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 300

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 145/300 (48%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT
Sbjct: 1   MKSTIEELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YP
Sbjct: 61  QEGQQFLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+I+L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P
Sbjct: 121 DIEIELNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL++H+LI F    P  +  +      +    + +I   + +S  ++ Q  + G G
Sbjct: 180 TQPEELEQHDLIGFTR--PTYINSWPIKVGDEYFFAQSKI---KASSGETVRQLTIRGHG 234

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ +    +   L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|304396484|ref|ZP_07378365.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304355993|gb|EFM20359.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 298

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 131/293 (44%), Gaps = 11/293 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+F  W  + +F +VA  GSFT AAE+  L +SS+S++IS LE  +GI+L  R  R L L
Sbjct: 1   MAFRQWQDMALFALVAECGSFTGAAERAGLPKSSVSQRISQLEQRLGIRLLNRTTRQLNL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G +      E+    E     +      PSG+LRI +   +G  LL      FL LY
Sbjct: 61  TFAGERYLLHCQEMMQASERADQAIASLRENPSGRLRITSPAGIGATLLARCNAAFLRLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ + + + ++  D+  +  D A+R  +P Q SSLI R++        A+ HYL     
Sbjct: 121 PDVTLDVSISDEMRDLVQEGFDVALRTGQP-QESSLIGRRIGNCPRLLVASQHYLNQHPP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L  Q+L  H  I         ++          P G         ++ L   +  +  +
Sbjct: 180 LLHPQQLSAHRCIAHRAWNEWVLQRDGAFYRWLLPPGH------LTDNLLYARESALGDA 233

Query: 240 GIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           GI LLP ++      +P LV ++ +       ++  YP    N+  L  F  F
Sbjct: 234 GITLLPHFLTDGAMADPRLVPVLPEWEVEGNELWLVYPGRKLNSPALARFIEF 286


>gi|160897559|ref|YP_001563141.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363143|gb|ABX34756.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 305

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 138/300 (46%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D + +F  V  + SFT  A +   +Q ++++QI+ +E  + ++L  R+ RG++LTE
Sbjct: 1   MDRLDAMHMFVRVVETSSFTKVAHEFATTQPTVTKQIAAMEARLKVRLLNRNTRGVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     + + +      +Q    +  G+LRI +++  G+ +L     EF+   P 
Sbjct: 61  AGALYYEKCKTIVNDVAEADKVVQVRQTQVQGQLRIGSSVAFGRRVLIPLALEFMAHNPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L  +++  D+  +  D A+RL K +  SSL  R L        A+P YL+    P 
Sbjct: 121 VQVDLSFEDRYTDLVANGIDVALRLGK-LADSSLGARTLGVNPWVLVASPTYLRKRGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  + +  +  +  + +        P+       L+ N+  +++       GI
Sbjct: 180 RPSDLKEHATLIYSSV--QGNDIWRLRNASGEPVSVAVTGRLRSNNLSALLAASRSHMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDW 297
           A LP Y+  D+     +V +++    P   ++  YP       K+++F  F+  +   +W
Sbjct: 238 AALPRYVAHDSLEAGRVVEVLKTCRLPEQEIHAVYPSPRLVPQKVQSFIAFLQGRFDAEW 297


>gi|114773248|ref|ZP_01450483.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114546367|gb|EAU49276.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
          Length = 304

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 132/293 (45%), Gaps = 6/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D + +F  V  +GSF+  A+ L ++ S +S++I+ LE  + ++L YR  R L+LT
Sbjct: 1   MQAKADDIFLFVQVVDAGSFSKVAQLLEITNSVVSKRIARLEKALNMQLLYRSTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L+         L+     +   S   SGK++I       +  L   + EF  LY 
Sbjct: 61  DGGKTLYAKAKVAQDALQEAHDAVCGYSDSISGKIKITVPSVSARLTLTTAIAEFCRLYK 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I++I+D++  ++  +  D AIR    ++ SSL+ R+LV  H    A P YLK    P
Sbjct: 121 EVTIEMIIDDRFANLIEEGYDLAIRTGY-LEDSSLLARRLVDSHWVIVATPQYLKQQGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  EL  HN +T+     +         + +    E        N   ++ Q  + G G
Sbjct: 180 ESSNELKFHNCLTYKYNEAQPNHWR--FLSAEGEYTEVVQGNFVANDLNALHQAVIAGLG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP  +V D+     L +++ D       +Y  YP+      KLK     +
Sbjct: 238 IAYLPRVLVYDDLQNGELTQLLSDQTAKRVGIYAVYPKMRSPDTKLKLLIEHL 290


>gi|26988125|ref|NP_743550.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24982855|gb|AAN67014.1|AE016330_3 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 302

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 132/298 (44%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +RVF  V   GS + AA+ L LS+  +SR ++ LE  VG +L  R  R L+LT 
Sbjct: 1   MDRLNAMRVFVTVIDLGSQSAAADYLQLSRPVVSRYLAELEDWVGTRLMQRTTRKLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++       Q  +Q+    P G LRI+ +   GQ  L   +  ++  +PD
Sbjct: 61  AGQETLPRCRQLLELAGDLQAAVQQPEDAPRGALRISVSTSFGQAQLVDAVAAYVRRFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L + ++ +++  +  D AIR    +   SLI R+L        AAP YL     P 
Sbjct: 121 VKVELQMLDRTVNLVDERIDLAIRTSNDV-DPSLIARRLSVCRSVVCAAPAYLNERGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++EL  HN +T               A   + +  P    +  N  +++ +  + G+GI
Sbjct: 180 RVEELSLHNCLTHAYFGHSLWH----FAVAGQQVAVPVSGNISANEVMTLQRAALAGAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +LP Y   D      LVR++ +       +   Y         L++  +F+  + +D
Sbjct: 236 TMLPTYQAADAIRRGELVRLLPEAKPRELNLNAVYTSRKHMPATLRSMLDFLVQRFKD 293


>gi|107028272|ref|YP_625367.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686265|ref|YP_839512.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897436|gb|ABF80394.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651980|gb|ABK12619.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 134/299 (44%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF  +  +GS T AA+   LS + +   +  LE+ +G  L +R  R   ++
Sbjct: 1   MDL-LKAMAVFVRIVETGSLTAAAQASDLSPTMVGNYLQTLESRLGAVLVHRTTRKQKVS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +    E+   ++ T+        +P G+LR+   +      L   L ++   YP
Sbjct: 60  AFGHAYYERCVEILGLVDDTEQLALAHLKQPRGRLRVTAPVVFTNECLIPALADYYRRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ ++  +   D+  +  + AIR+   + +  ++ R L    +   A+P Y+     P
Sbjct: 120 EIKLDIVATDSLADLFDEGFEAAIRIG-TLANPDVVARPLAPYRLVLCASPAYVHEHGAP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVL 237
            +   L +H+ +T+               T++ P G   +S    L++++  ++ +  + 
Sbjct: 179 ATPHALGEHHCLTYAYPPRAEWHAAQTQWTLEGPDGPMSLSVDGRLKIDNADALRRAALR 238

Query: 238 GSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GIA+LP  +++D+     L+ IM D   P  T+   Y +  + + KL++F  F+  +
Sbjct: 239 GLGIAMLPSILIRDDIREKRLIEIMPDFAGPERTMNLLYLQERQQSPKLRSFTEFVVDR 297


>gi|300714966|ref|YP_003739769.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299060802|emb|CAX57909.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 302

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 127/287 (44%), Gaps = 5/287 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F      GSFT AA+ LHL+ S+IS+ ++ LE  +G +LF R  R L LT+ G 
Sbjct: 7   LKDITPFVASVEHGSFTAAADSLHLTSSAISKSVARLEARLGSRLFERTTRRLALTDAGQ 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   + V  +L   +  L      P G+LRIA     G+  +   + EF    P++QI
Sbjct: 67  AFYETCTRVLSELAEAESVLAAQRAIPVGRLRIAVPNTFGRMQVMPLINEFCQQNPEMQI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L   ++ +D+  +  D AIR+   P    SL  R L    +   A+P YL     P S+
Sbjct: 127 ALSFSDRFVDLFEEGVDIAIRIGGSPDFPPSLGYRFLGNERLIFCASPDYLAQHGVPDSL 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q L +   I + D +      ++  +   R I       + +    + +   V G G+A 
Sbjct: 187 QALTERRAIVY-DRVDGSTSPWHIRSPDGRTITRTLPYRMALGDGEAQVAAVVAGLGVAQ 245

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +  ++++    +  LVRI+ ++      ++  +P   +   K+ A  
Sbjct: 246 MATWLMEKELASGALVRILPELAVEGLPLFIVWPRRKQLLPKVDALL 292


>gi|239831215|ref|ZP_04679544.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239823482|gb|EEQ95050.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 344

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 135/300 (45%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT T
Sbjct: 41  MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPT 99

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 100 EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDKYP 159

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 160 DIEVRLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVICAAPAYLEKHGVP 218

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S  EL  DKH+ +      P   E +  L T +             +    + Q+ + G
Sbjct: 219 QSPDELLGDKHDCLLL--RFPGSKEYYWSLQTPEGLRKFEVTGPYDSDDGDVLTQWALGG 276

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P + VK+   +  LV I+E+       +   YP       K++   +F+  + +
Sbjct: 277 RGIINKPLFEVKEYIRDGRLVPILENTPPAPIQLAAIYPHKRFQDPKVRLIIDFMTERCQ 336


>gi|296387269|ref|ZP_06876768.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313109623|ref|ZP_07795570.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310882072|gb|EFQ40666.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 307

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R L LT 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAAETLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  +L+  +  L  +++ P G+LRI     L + LL   L EF   YPD
Sbjct: 61  DGAAYYERVIRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ +D+  +  DC IR    ++  SL+ R++  + +  YAAP YL+    P 
Sbjct: 121 IQIDLGVSDRLVDLIDENVDCVIR-GGELRDQSLMARRVGDLQLGVYAAPAYLQRAGVPS 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +EL+  H  I               +   +  +       L V+   + +   + G G
Sbjct: 180 HPRELEDSHQRIVGFLWARTGKALPYAMHRGEESLRVAGRHVLAVDDGNAYLAAGLAGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP Y+ ++      L+ + ED       +Y  +P     +GKL+ F  ++  
Sbjct: 240 ILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWVAE 294


>gi|254465490|ref|ZP_05078901.1| transcriptional regulator [Rhodobacterales bacterium Y4I]
 gi|206686398|gb|EDZ46880.1| transcriptional regulator [Rhodobacterales bacterium Y4I]
          Length = 294

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 132/292 (45%), Gaps = 9/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +R F  VAR+GS   AA +L +S + + ++I+GLE  +  +L  R  R  +LT
Sbjct: 1   MDL-FTAMRTFVEVARAGSMNAAALKLKVSNALVGQRIAGLEDHLQARLLNRTTRQQSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G        ++   +  ++ +  +      G+LRI   +  G   L   LK+F    P
Sbjct: 60  AFGQVYLEQCQDILELVSISEGKASDQQQHLQGRLRITAPVSFGSAALMPALKKFTQAAP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I+L L +++ D+  +  D A R+ + ++ SSL+Q KL    M   A+P YL +  EP
Sbjct: 120 EVEIELFLSDRNEDLLAEGYDGAFRIGQ-LEDSSLMQIKLAPYKMVVCASPEYLADGFEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L++   + F     K        A     I     + + VNS  +++     G G
Sbjct: 179 QTPSDLNRFRAVLFSKTGRKPWR----FARGSEAIDWAPKAAVSVNSGQAVLSAAKAGMG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IA++P+ +   +     L +++     P   +   +        +L+AF  F
Sbjct: 235 IAMVPEVLAHGDIASGTLAQLLPGWSLPEQPMALVFHRDRYRPQRLQAFIEF 286


>gi|148979121|ref|ZP_01815329.1| regulatory protein, LysR [Vibrionales bacterium SWAT-3]
 gi|145961987|gb|EDK27276.1| regulatory protein, LysR [Vibrionales bacterium SWAT-3]
          Length = 295

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 8/292 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     ++ F V    GSFT AA ++ +S+S +SR +  LET +  +L  R  + L+LT
Sbjct: 1   MNV-LMSIKSFIVTVEEGSFTGAASKIGVSKSLVSRHVRELETYLNTRLLNRSTKSLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  ++E     L+  S +  G L +     L + +L   + EF   YP
Sbjct: 60  EAGRRYFSEAHGLVDRIEDLNDSLRFDSSEMVGALSVMAPKGLTEIMLMPFILEFSDKYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           D+++ L+L +   D++ +  D AIR    + +   +I R +        A+P YL N  +
Sbjct: 120 DLKLNLMLSDGVQDLAEEGCDIAIRSGDLVSKDLGMIARTICVNQNLVCASPSYLANHSD 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + ++L  H +I   +L    +  F+          +P+   L VNS  ++      G 
Sbjct: 180 IQTPKDLTNHCIIEDPNLKNDGLWRFDLGGHFHDVNLQPK---LTVNSVQAVKAAVRSGY 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GIA+LP  + K++    ++V I+ + +     VY  Y E +    K+KAF +
Sbjct: 237 GIAMLPRQLAKEDLESGSIVEILSEYVLKERKVYALYRERVNTPRKVKAFID 288


>gi|293606820|ref|ZP_06689171.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292814824|gb|EFF73954.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 334

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 132/290 (45%), Gaps = 7/290 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  G+F  A ++L + +S++SR +  LE ++G +LF R  R  +LT +G + +  
Sbjct: 33  AFIAVAVEGNFAKAGDRLGIGRSAVSRSVQKLEDQLGTRLFVRTTRTTSLTAEGRQFYEQ 92

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                 ++      ++E     PSG LR+ +T+  G+ ++   L+ F   +P I ++L L
Sbjct: 93  CHPGVARIVQALDNMRELREGPPSGLLRVCSTVGFGRKVVAPLLQGFCREHPGIAVELWL 152

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D+   D + +  D + R  + ++ S +I +K++ + M   A+P Y      P  + ++ +
Sbjct: 153 DDAPTDFAAERVDVSFRNGR-MEDSQVIAKKIIPMQMLLCASPAYAAAHGLPACVDDIAR 211

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  + F     +  E    +A   R +  P  + L  N    ++Q  + G G+A +  Y 
Sbjct: 212 HRCVNFRLASGRIYEWEFKVAGTLRKVAPP--AMLSFNDADLVLQAVLDGHGMAQMAGYQ 269

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V ++     LV  +          Y C+        +++ F +++    R
Sbjct: 270 VGEHLRAGTLVACLPQYAPDDRGHYLCFLSRQHLPARMRVFIDYMTEHIR 319


>gi|302185701|ref|ZP_07262374.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae 642]
          Length = 302

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+FD + + +F  V RSGSF  AA  L +  +++SR++  LE ++  +L  R  R L LT
Sbjct: 1   MAFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +         +     +L     +P G +RIA   D         +  FL LYP
Sbjct: 61  QAGEDFYGRCVGAVDGVMEAAEQLASGRDEPGGLVRIAAMADFFDFFSMDWVAGFLALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCRE 179
            +Q++ +L +   D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDEGHDTMVASPAYIAAYGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P S+Q L  H  ++              L   D  + E  I S    N+  ++ +  + G
Sbjct: 180 PDSLQSLYSHYCVSAAHRGGVTAWR---LLGPDAKMHEVHIASRFNANTAQALRKATLAG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K R
Sbjct: 237 LGIALLPATLIRSDLQDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDKLR 296

Query: 296 D 296
           D
Sbjct: 297 D 297


>gi|319782432|ref|YP_004141908.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168320|gb|ADV11858.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 299

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 4/296 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L  F  VAR  SFT AA +L +SQS++S  +  LE  +G++L  R  R ++ TE G
Sbjct: 5   NLNELTAFLAVAREESFTRAAAKLGVSQSALSHTVRALEERLGVRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R       ++ET  I L     KP+G +RI+        +L   +   L  YPDI+
Sbjct: 65  ERLLRTVGPRLDEIETELIALSALREKPAGTIRISAGEHAADAVLWPAIAPLLPDYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+D    DI  +  D  +RL + +    +  R    + M    +P Y     +P + 
Sbjct: 125 VEIIVDYGLTDIVAERFDAGVRLGEQVARDMIAVRIGPDMRMAVVGSPTYFATRPKPRTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  HN I         +  +       R +       L  N+    M   + G G+A 
Sbjct: 185 QDLTTHNCINLRLPTYDGLYAWE-FEKAGRELKVRVEGQLVFNTAALRMNAVLAGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LP+  V  +     LVR++ D   P    +  YP   + T         +  + ++
Sbjct: 244 LPEEQVTAHLANGRLVRVLADWCGPFPGYHLYYPSRRQATPAFSLLVEALRYRGKE 299


>gi|209521529|ref|ZP_03270231.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209498029|gb|EDZ98182.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 306

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 141/299 (47%), Gaps = 8/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE
Sbjct: 1   MDRFEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +   +  L      P+G +R+ T+  L ++LL   L +F   YP 
Sbjct: 61  DGAAFYERCVRILADVVDAESSLSNKRENPAGTIRVDTSGTLARSLLLPALDDFYAQYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L +++ID+  D  DC IR+   ++ SSL+ +++    +   AAP YLK    P 
Sbjct: 121 IDVRLGLADRNIDLIQDAVDCVIRMG-TLEESSLVAKRIGLARIVTCAAPAYLKKYGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ +L  H  + +  +  +    F +   VD  I    +   L VN     +   VLG G
Sbjct: 180 TLADLTNHRAVNY--VSARTGRTFPFEYEVDGEIERVAMKGTLAVNDGSVYITAGVLGHG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I     ++V    +   L  I+ +  +P   +   Y      + +L+AF ++    AR+
Sbjct: 238 IIQPSRFMVAELIERGALTEILGNYTSPGTPLSILYAHRRNLSSRLRAFIDWFSELARN 296


>gi|298717497|ref|YP_003730139.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361686|gb|ADI78467.1| Uncharacterized HTH-type transcriptional regulator ycaN [Pantoea
           vagans C9-1]
          Length = 302

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 146/291 (50%), Gaps = 5/291 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + + VF  VA S SF+ AA++LH+++S++++ IS LE  +G+ LF R  R  +LT
Sbjct: 1   MKSEMNTIPVFVAVAESVSFSQAAQKLHVTRSAVAKTISRLEERLGVTLFNRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+  +        ++   +  L+   ++ SGKLR++  + LGQ  +   L      +P
Sbjct: 61  AEGTLYYESCCRALDEINRAEDILEGGKLQVSGKLRVSVPVLLGQMCVSPILLTLAKQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++   ++  D+  +  D A+R+     SSSL+ R L +  M   A+P YL++  EP
Sbjct: 121 GLELEISFSDRPADLQDEGFDLAVRIGVLPDSSSLVARYLGSHSMVFCASPGYLRDAGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +S  EL++H  + +  +    +  +      D        +   ++   ++    V G G
Sbjct: 181 ISPDELNQHAAVAY--IRSGRILKWRIKNEKDEITDLIPPARFTMDDMQAVRDITVAGGG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           IA LP ++V++     +L  I++D    S+ VY  +P     T K++   +
Sbjct: 239 IASLPYWLVREELATGSLTEILKDRSAGSWPVYAVWPRTPHLTLKVRLAVD 289


>gi|254420174|ref|ZP_05033898.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
 gi|196186351|gb|EDX81327.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
          Length = 291

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 128/295 (43%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  WD +  F  VA   SF+ AA++L LS S++SR+I+ LE  +  +L  R  R + LT
Sbjct: 1   MSSRWDGIDEFTAVAEQASFSTAAKRLGLSTSAVSREIARLEDRLQTRLLNRTTRRVELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G         +  + +     +Q     P G LR+  ++  G+  +   +  F   + 
Sbjct: 61  DAGRDFLARCRRLIDERDEALAAVQPDDSAPRGLLRMTCSVSYGERFVAPAVNRFARDHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L LDN+  D+  D  D AIR    +  S LI R+L +  +   AAP YL     P
Sbjct: 121 ELSIELDLDNRLRDLVGDGYDLAIRFGH-LTDSRLIARRLASRRLILCAAPAYLARRGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + EL  H+L+T      +        +   R          + NS  +++   + G G
Sbjct: 180 RDLSELPAHDLLTGSSEHWR-------FSEAGRETSFRPQGRWRCNSGAAVLDAAIQGLG 232

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  LPD+ V +      L  ++ +   P   V+  +P       K++   + +  
Sbjct: 233 LCQLPDFYVTEPLRAGVLTALLTEHRPPDEGVWAVHPHRRHVPPKVRLMIDHLRA 287


>gi|158337296|ref|YP_001518471.1| LysR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158307537|gb|ABW29154.1| transcriptional regulator, LysR family [Acaryochloris marina
           MBIC11017]
          Length = 302

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 133/296 (44%), Gaps = 14/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L++F  V R GSF  AA   ++  SS+SR I+GLE E+ ++L  R  R L+LTE 
Sbjct: 1   MDISVLKLFVDVVRQGSFAGAARDRNIDPSSVSRAIAGLEKELDLRLLQRTTRQLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  +L+       +   +P G+LR+  +   G   +   L +F  LYPD+
Sbjct: 61  GKTYFERIEPLIEELQQASEIAADVVGQPKGQLRVTVSASFGLKCIVPLLPQFEQLYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+  +   D+ ++  D AIRL   ++ S+LI ++L+       A+P YLK       
Sbjct: 121 TVNLLFSDAVEDLLLNRIDVAIRLGL-LRDSTLIAQQLMQTRYRVCASPDYLKQSPPIAV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++  HN + F    P       WL           P      +++ +++ Q  +   G
Sbjct: 180 PEDIADHNCLRF----PLAGFQSQWLFKDAQGTLTEVPIHGNTVISNGIALQQCVIANMG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNF 289
           +ALLP++++ ++     LV ++              +F YP       KL+ F  F
Sbjct: 236 LALLPNWLINEDLRTGTLVDVLPAYEVTGTDFSTAAWFVYPSRCYVPLKLRVFIEF 291


>gi|295677070|ref|YP_003605594.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436913|gb|ADG16083.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 312

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 136/300 (45%), Gaps = 13/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YPD
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVSRYQQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+  +  D ++ L   +  S L+ +++ +    A A+P YL+    P 
Sbjct: 121 VHVELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRIGSAFSIACASPAYLERHGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS----CLQVNSYLSIMQYCVL 237
           +  +L +HN +     +           T D P GE  +S      QVN   +++     
Sbjct: 181 TPADLAQHNCLQMVTPVHPPDRW-----TFDGPNGEEVVSLGSATFQVNVAEAMVVAVAQ 235

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GIAL+P Y       +  L  ++ +  +    +Y  YP       K++ +  F+  + 
Sbjct: 236 GMGIALIPIYSAISRLRSGELEWLLPEYTSQQMNLYALYPSRQYLDAKIRTWVEFLRDEL 295


>gi|229592568|ref|YP_002874687.1| LysR family regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229364434|emb|CAY52245.1| LysR-family regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 298

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 142/301 (47%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L++F  V   GS + AAEQ+  + S++SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQIFVSVIECGSISAAAEQVGQTPSAVSRTLSRLEAKLDTTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  ++E  +  L     KP+G+LRI   +    + +   + EF  LYP
Sbjct: 61  EEGKYFFEQAKVILVQMEALEERLSSRQKKPAGRLRINAAVPFMLHGIVPYIAEFRSLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L  D+  ID+     D AIR+   +  S+L  R L +  +H  A+P YLK    P
Sbjct: 121 EILLELNSDDLIIDLLEQSTDIAIRIGA-LADSTLHARALGSTPLHILASPEYLKQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ EL  H L+ F             +   DR + +PR++    +S  ++ Q  + G G
Sbjct: 180 TTVAELAGHTLLGFTQTETLNHWPLRHVEG-DRWLIQPRVAA---SSGETVRQLALEGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L +++  D+     LV ++E   +     ++  +    +   +++ F +FI  K   
Sbjct: 236 ICCLSNFMTVDDIDAGRLVPVLEAFNSGYRQPIHAVFYRNSQLALRIQCFLDFIQAKLAR 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|218672696|ref|ZP_03522365.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 302

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 10/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +RVF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +E  +     +  +P G LR+     L ++ +  +L  FL  YP+
Sbjct: 61  DGEAYYQRCLSILADIEDAEGAFAGA--RPKGLLRVDVHGTLARHFVLPSLPSFLDAYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+  +   ++ +D+  +  DC +R+  P   S ++ R+L  +     A+P Y+     P 
Sbjct: 119 IEFHMSEGDRLVDLVREGIDCVLRVGTPG-DSDMVARRLAMLDEITLASPAYIAAHGLPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               L  H ++ F       +    ++     R I  P  + + VN+  S +    +G G
Sbjct: 178 HPDRLTGHRMVGFRSSSTGTLLPLEFIVDGAVRNITLP--ATVAVNAAESYVSAARMGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +P Y  + +     LVR++ED       V   YP   + + +++ F N++ 
Sbjct: 236 LIQIPRYHAEKDLTEGRLVRVLEDFPLTPTPVSLLYPRNRQLSPRVRVFINWLV 289


>gi|187924323|ref|YP_001895965.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715517|gb|ACD16741.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 344

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 7/289 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  GSF  A ++L + +SS+SR +  LE  +  +LF R  R  +LT +G   +   
Sbjct: 39  FLAVANEGSFARAGDRLGIGRSSVSRNVQKLEALLDARLFLRTTRSTSLTREGELFYENC 98

Query: 71  SEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                ++     +++E  +  P G LRI +    G+ ++   L+ F   YP+I ++L+L+
Sbjct: 99  QPGIERIAQALEDMRELRNGPPRGHLRIVSAPGFGRKIVAPLLRGFHTRYPEIALELLLN 158

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D + D  D +    + ++ S ++ R+L+ + M   A+P Y +    P  I EL  H
Sbjct: 159 DRPADFTTDRVDVSFHDGR-LEDSGIVARQLIPMQMLVCASPAYARRHGLPRHIDELADH 217

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I F     +  E          P     ++    N    I+Q  + G GIA LP Y V
Sbjct: 218 RCINFLAASGRIREWE--FKVNGLPQRRQPVAQHTFNDPDLIVQAVLDGLGIAQLPAYQV 275

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D      L+  +          Y CY    +   +++ F +++    R
Sbjct: 276 CDLLAGGQLLSCLAQHAPEDGGHYLCYLSRKQLPARVRVFVDYMTEHTR 324


>gi|325928961|ref|ZP_08190122.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|325540650|gb|EGD12231.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 309

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 131/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  V  +GSFT AAE L +S++S+++ +  LE  + +KL  R  R + +T  G+
Sbjct: 5   FDAMQAFARVVETGSFTKAAEHLDMSRASVTQLVQQLEARLRVKLLNRTTRRVQVTADGA 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L+  +  L  ++  P G+LR+     L + +L   L  F   YP+IQ+
Sbjct: 65  AYYERVLRLLADLDDAETSLSVAASLPRGRLRVDVPSPLARLILMPALPAFHARYPEIQL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +D+  +  DC IR    I   SLI R +  +    YAAP YL+    P    
Sbjct: 125 DMGVSDRRVDLIGENVDCVIR-GGTITDQSLIARHVGDLQAGVYAAPDYLQRLGTPTHPT 183

Query: 185 ELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL+  +H  + F          +  +   +  +       +  +   + +   + G G+ 
Sbjct: 184 ELENTRHRCVGFMRWGSSTTVPYV-MQRGNEAVRVHGRHVVAADDGNAYLAAGLAGMGVL 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP Y+   +     LV I +D    +  +   +P     + KL+ F +++  
Sbjct: 243 WLPVYMANAHVASGELVPIFQDWQLEAMPLSIAFPPNRHVSAKLRVFIDWVIA 295


>gi|300311233|ref|YP_003775325.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074018|gb|ADJ63417.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 315

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 131/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++ VF  V  +GSF+ AA QL  + S+ISR I+ LE  +G +L  R  R L L+E G 
Sbjct: 10  LNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +H    ++ +  +           +P G++R++    +G  L+  ++ +FL  +P + +
Sbjct: 70  DIHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDFLAAHPKVDV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D+  D  D AIR+        L+ R+L+ I     A PHYL     P   Q
Sbjct: 130 LLRLEDRYMDLIDDEVDLAIRITDH-PPPGLMGRRLMRIDHLLCATPHYLATHGTPAHPQ 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H+ I  G+        F       + +          N     +   +   GIA L
Sbjct: 189 ALKEHSCIYLGESPADARWRFR---RQGKSVNVEVRGRYAANHTGVRLDAVLRHLGIASL 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +I +   +  +LV+++      +     ++  YP       +L AF  F+  + 
Sbjct: 246 PYFIARPALEEGSLVQVLPQWSFRTHYCGELWALYPATRHLPPRLGAFVQFLAQRL 301


>gi|16273274|ref|NP_439515.1| transcriptional regulator [Haemophilus influenzae Rd KW20]
 gi|1176210|sp|P43011|Y1364_HAEIN RecName: Full=Uncharacterized HTH-type transcriptional regulator
           HI_1364; AltName: Full=ORF2
 gi|1574196|gb|AAC23011.1| transcriptional regulator, putative [Haemophilus influenzae Rd
           KW20]
          Length = 288

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 134/286 (46%), Gaps = 10/286 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V  + SFT AA+Q ++S +  S+ +S LE  +  +L  R  R +  TE
Sbjct: 1   MDKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+     + + +    G L I+   D G   +  NL  F+  +P 
Sbjct: 61  AGMMYYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  ++K ID+  +  D A+R+   ++ SSL+ RK+ T  +H  A+P+YL+    P 
Sbjct: 121 LHIEVEFNDKKIDLLSEGYDLALRIGY-MEDSSLVSRKIGTTTVHFAASPNYLETNGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L+ HN + + +     M   NW+ +        +I S +  NS  +++     G G
Sbjct: 180 TPDDLEHHNGLLYKN----AMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           IA LP +I+    +   L+ I+ +       ++  YP       K+
Sbjct: 236 IANLPKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRHLPIKV 281


>gi|15597056|ref|NP_250550.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107101292|ref|ZP_01365210.1| hypothetical protein PaerPA_01002326 [Pseudomonas aeruginosa PACS2]
 gi|218892184|ref|YP_002441051.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234954|ref|ZP_04928277.1| hypothetical protein PACG_00830 [Pseudomonas aeruginosa C3719]
 gi|9947848|gb|AAG05248.1|AE004612_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126166885|gb|EAZ52396.1| hypothetical protein PACG_00830 [Pseudomonas aeruginosa C3719]
 gi|218772410|emb|CAW28192.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 295

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 144/299 (48%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L+ F  V  SGS + AAEQ+ L+ S++SR +S LE ++G  L  R  R + LT
Sbjct: 1   MKANSDELQSFVSVVDSGSISAAAEQMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++  ++E  +  L      P+G+LRI        + +  ++ EF  LYP
Sbjct: 61  EEGRYFLDQARQILQQMEALEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ++L  ++  ID+     D AIR+   +  S+L  R L    +H  A+P YL     P
Sbjct: 121 DIQLELNTNDLIIDLLEQRTDVAIRIGA-LSDSTLHARPLGASRLHILASPEYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            SI+ L  H L+ F    P+ +  +  + A  DR   +P IS    +S  ++ Q  +   
Sbjct: 180 ASIEGLRGHTLLGFTQ--PEHLNRWPVVHADGDRLEIQPDISA---SSGETLRQLALSHQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIA L  ++      +  LV +  + ++     ++  Y    +   +++ F +FI  + 
Sbjct: 235 GIACLASFMTDRDIQDGRLVPLFAEQMSEYRQPIHAVYYRNSQLALRIQCFLDFIQQRL 293


>gi|327394892|dbj|BAK12314.1| putative HTH-type transcriptional regulator YcaN [Pantoea ananatis
           AJ13355]
          Length = 301

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 123/296 (41%), Gaps = 5/296 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F  V+R  SF  A ++L LS S++S  I  LE  + I+LF R  R + LT
Sbjct: 1   MKLNVYDFATFIAVSRHKSFRAAGDELGLSPSAVSHAIKQLEQRLKIRLFNRTTRSVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+ L+      + ++     E       P G L+I ++    + +L   +  F  LYP
Sbjct: 61  EAGANLYERLRPAFDEINVILDEANCFRQTPMGSLKINSSRLASRMVLIPLVATFSRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++++  +++ +DI  +  D  IRL   ++   +       I +   A P Y      P
Sbjct: 121 DIRVEITTEDRLVDIVKEGFDAGIRLSSRLEKDMIALPVGPKIRLVVVATPDYFARHAPP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +++  H  + F     +  +     +  +  +       + ++   +     + G+G
Sbjct: 181 EHPRDIMNHQCVMFRHGSGRIYQWE--FSGPEGRLEILPTGNILLDDMDAQRDAVLCGAG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  L    VKD      LV ++E  +    ++ F YP     +  L+AF + I   
Sbjct: 239 LGYLYHEQVKDELAAGRLVPVLEAWLPEQPSLQFYYPNRHYMSSALRAFIDHIKAA 294


>gi|254426162|ref|ZP_05039879.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335]
 gi|196188585|gb|EDX83550.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335]
          Length = 293

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 124/295 (42%), Gaps = 15/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   LR+F  +A  G  T AA  L LS +S S ++  LE  VG +LF R  R ++LT  
Sbjct: 1   MDVLSLRLFIRIAELGGVTAAAHDLSLSPASASARLVKLEEIVGFRLFNRTTRAVSLTTD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        +    LET    +Q       G LRIA     G+  +   L EF   YP +
Sbjct: 61  GELFLPYAQQTLETLETGLNTVQGQEKSAQGLLRIAMPGSFGRMYIIPLLAEFQTCYPRV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+     D  IR   P+  SSLI RKL        A+P YLK    PL+
Sbjct: 121 RLDLRLSDEVLDVVEGAYDLIIR-NAPLSDSSLIVRKLAFDRRLLVASPTYLKQHGVPLT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  +T G+          W     + +     S   VN   ++      G GI 
Sbjct: 180 PADLARHRCVTLGET--------KWEFEDGQTVSV--SSSATVNDGEAMRNMIEYGMGIG 229

Query: 243 LLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +   +      ++  LV ++ D       +++  YP       K++A  +F+  +
Sbjct: 230 MKSVWNASESLESGLLVEVLPDFPLVTEASIWLLYPSRRMIAPKVRAMIDFLLKR 284


>gi|312883144|ref|ZP_07742875.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369304|gb|EFP96825.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 299

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 136/296 (45%), Gaps = 9/296 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +   +R F ++A+ G+FT AAE L++S+S +SRQI+ LE ++ + L  R  R L LT+
Sbjct: 4   NINLADIRSFVLIAQLGNFTKAAEALNVSRSHVSRQINSLEKQMQVTLLTRSTRSLKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G + +       + ++   I   + + +  G +R+      +G+ ++   +  F+L +P
Sbjct: 64  AGKRFYLQCERAINGIDQALIAAVDDTKEVRGLIRVNCVGGYIGEKIISRYVAAFMLEHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+ L   +  ID+  D  D A R+ + ++ SS I +KL+ + + + A+P Y+     P
Sbjct: 124 QIQVHLDFSSNRIDLIQDDFDIAFRMGE-LEDSSFIAKKLMDVDIVSLASPSYVHKYGNP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL +H  +T          D N     D  I       L   +  +++   + G+G
Sbjct: 183 QHPNELAEHRCLTGSVKRWSFESDENPSEQFDVNIE----GNLVSKNGHALIANAMAGNG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P     D     +L+ ++     PS      Y        +L+ F +F+  K
Sbjct: 239 IIRVPRIYCPDAIEAGDLMEVLPKWHIPSVLFSVVYHRDKYQPKRLRTFIDFVKQK 294


>gi|170735503|ref|YP_001774617.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821541|gb|ACA96122.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 305

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 137/290 (47%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   +
Sbjct: 7   MRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  +++  +  + ++   P G+L++     + + ++   L  FL  +PDI ++L 
Sbjct: 67  ERSVAVLREIDDMEASVSQARNVPRGRLKVNLPPAMAKQVVVPALPAFLDAHPDIMLELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S +I +++ ++      +P Y   C EP ++ +L 
Sbjct: 127 VTDRQIDLVGEGVDCVVRIGA-LDDSGMIAKRIGSLTTCTCGSPAYFARCGEPQTVDDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  +    +         W   VD   GEPRI      + VN   + ++  V G G+  
Sbjct: 186 QH--VAVSHISADTGRPRPWDYVVD---GEPRIVQMCGTVAVNDADNYIECGVAGIGLIK 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              Y+V+    +  L  ++ D   P+  +   YP       KLK F +++
Sbjct: 241 TSLYLVEPYLKSGRLREVLTDFNAPARPISVLYPPNRHIPVKLKVFVDWL 290


>gi|91223611|ref|ZP_01258876.1| AphB/LysR family protein [Vibrio alginolyticus 12G01]
 gi|91191697|gb|EAS77961.1| AphB/LysR family protein [Vibrio alginolyticus 12G01]
          Length = 291

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +   S +  +L T   E+ +     SGK++I+   +L + ++      F+  YPDI
Sbjct: 61  GERFYHECSPLLQRLTTAAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNSFMKQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L  +N    +     D   R+  P + SSLI RK+  +     A+P YL +   P  
Sbjct: 121 NIELTTENNADKLDPTEWDVIFRVG-PQRDSSLIARKIGEVKDILVASPDYLTSNPAPHH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H+L+         +  +  + +    +        Q N+   +   C  G GI 
Sbjct: 180 AEELSNHSLL-----KGYPLIKWTLINSKGESVVNVDRGRFQANALNVVRSACSEGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD ++K   ++ +LVRI+ D       +Y  Y        K++ F +F+  
Sbjct: 235 LMPDVMIKEYIESGDLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 287


>gi|326793670|ref|YP_004311490.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326544434|gb|ADZ89654.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 304

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 129/283 (45%), Gaps = 6/283 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +AR+G+ +  A +L+L+ S+++++++ LE+ +G++L  R  R ++LT +G       
Sbjct: 10  FISLARNGALSATARELNLTPSAVTKRLTNLESRLGVRLVNRTTRKVSLTNEGEVYLEYI 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  ++E  +  + +    P G LR+   +  G+  +   L EFL   P ++IQL+L +
Sbjct: 70  KNIKEQIEEMEAVITKRRSTPRGLLRVNAPLGFGRTYIAPILSEFLSENPAVEIQLMLTD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + + +  D  D  IR  +    S +I RK+        AAP YLK   +P S  +L +HN
Sbjct: 130 RPMTLPDDSIDVCIRFGQA-PDSRVIARKIAPNRRLVCAAPSYLKRYPKPNSPADLAEHN 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            I                    +       + +  N     +++ + G G+ +  ++ + 
Sbjct: 189 CIIIKQNQQVASAWR--FYKNGKEEVIKVKANMVTNDGEIALRWAIDGHGLVMRAEWDLA 246

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                  L  ++ED  TP   +Y  Y E    + KL  F +++
Sbjct: 247 KYIRQGKLEIVLEDYETPEADIYAVYMERQNQSAKLTRFLDYL 289


>gi|323519879|gb|ADX94260.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
          Length = 300

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 144/300 (48%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT
Sbjct: 1   MKSTIEELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YP
Sbjct: 61  QEGQQFLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+I+L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P
Sbjct: 121 DIEIELNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL++H+LI F    P  +  +      +    + +I   + +S  ++ Q  + G G
Sbjct: 180 TQPEELEQHDLIGFTR--PTYINSWPIKVGDEYFFAQSKI---KASSGETVRQLTIRGHG 234

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ +    +   L+ + ED I   +  ++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQNIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|307822701|ref|ZP_07652932.1| transcriptional regulator, LysR family [Methylobacter tundripaludum
           SV96]
 gi|307736305|gb|EFO07151.1| transcriptional regulator, LysR family [Methylobacter tundripaludum
           SV96]
          Length = 300

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 129/291 (44%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +  +VF  +   G+FT  A +++LS   IS+ ++ LE  +G+ L  R  R L++TE G 
Sbjct: 4   LNNTQVFCRIVELGTFTAVAREMNLSAMMISKYMAQLEESLGVALLNRTTRQLSMTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  + ++       +    +  ++  G L+I+  ID G   +   +  +   YPD++I
Sbjct: 64  IYYYRSKQLLDDFSELEEYTSQLGLQVKGTLKISAPIDFGGLYMVPAIDAYQRAYPDVKI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N  +++S    D +I +   +    ++ RK+    +  YA+P Y+    EP +I 
Sbjct: 124 LMTLHNSQVNLSEGSFDLSILVTDTL-DLGVVARKIAQTRLCTYASPDYIAEHGEPQTIA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL  H  + + D   K      W+   D    + + +     N+  ++ Q   LG GI  
Sbjct: 183 ELSSHRCLHYMDTPHKDY----WVFNDDGEEVKIKANWHFASNNGRALCQAAALGMGITQ 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            P+  V    +   L+ I+     PS  +Y  Y +      KL  F +F+ 
Sbjct: 239 APELSVMNYLEQGKLMEILPAFRIPSLEIYATYLQRRFLPAKLATFVDFLI 289


>gi|323528229|ref|YP_004230381.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385231|gb|ADX57321.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 349

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 128/289 (44%), Gaps = 7/289 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA  GSF  A ++L + +SS+SR +  LE ++ ++LF R  R  +LT +G   +   
Sbjct: 42  FLAVANEGSFARAGDRLGIGRSSVSRNVQKLEAQLEVRLFLRTTRSTSLTREGELFYERC 101

Query: 71  SEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                ++      ++E  S  P G LRIA+T   G+ ++   L+ F   +P I ++L+L+
Sbjct: 102 QPGVERIVEALDGMRELRSGPPRGHLRIASTSGFGRRIVAPLLRGFHSRFPGITLELLLN 161

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            +  D + D  D + R  + ++ S ++ R+L+ + M   A+P Y +    P  I EL +H
Sbjct: 162 ERPADFTSDRVDVSFREGR-MEDSGIVARQLIAMQMIVCASPAYARRHGLPRRIDELAQH 220

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I F     +  E        D        +    N    I+Q  + G GIA +P Y V
Sbjct: 221 RCINFRMASGRIKEWE--FKVDDHTQRHQPAAQHTFNDADLILQAVLDGVGIAQVPAYQV 278

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D      LV  +          Y CY        +++ F +++    R
Sbjct: 279 CDLLGERRLVSCLGQHAPDDSGHYICYLSRKHLPARIRVFVDYMTEATR 327


>gi|107023025|ref|YP_621352.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686733|ref|YP_839980.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893214|gb|ABF76379.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652448|gb|ABK13087.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 305

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 137/290 (47%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   +
Sbjct: 7   MRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  +++  +  + ++   P G+L++     + + ++   L  FL  +PDI ++L 
Sbjct: 67  ERSVAVLREIDDMEASVSQARNVPRGRLKVNLPPAMAKQVVVPALPAFLDAHPDIMLELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S +I +++ ++      +P Y   C EP ++ +L 
Sbjct: 127 VTDRQIDLVGEGVDCVVRIGA-LDDSGMIAKRIGSLTTCTCGSPAYFARCGEPRTVDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  +    +         W   VD   GEPRI      + VN   + ++  V G G+  
Sbjct: 186 QH--VAVSHISADTGRPRPWDYVVD---GEPRIVQMCGTVAVNDADNYIECGVAGIGLIK 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              Y+V+    +  L  ++ D   P+  +   YP       KLK F +++
Sbjct: 241 TSLYLVEPYLKSGRLREVLTDFNAPARPISVLYPPNRHIPVKLKVFVDWL 290


>gi|152994932|ref|YP_001339767.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835856|gb|ABR69832.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 300

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 131/302 (43%), Gaps = 11/302 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L VF  VA   +F  AA++L +++S++S+ I  LE ++GI LF R  R + LT
Sbjct: 3   MKIDLNILPVFIAVAEEHNFRVAADRLGITRSAVSQMIRKLEDQLGIALFTRTTRSVKLT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L+         + ++  E   S   P G LRIA+T      L    + EF   YP
Sbjct: 63  EAGEHLYSQVRPQLENVNSSL-ENITSHKSPRGLLRIASTSIAEPFLSGKFIVEFSKKYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ + + + + DI     D  +RL   ++   +           A A+P Y+     P
Sbjct: 122 DIELDITVSDDEFDIVKAGFDAGVRLGDSLEQDMIALPICGLQRDMAVASPDYIAQQGIP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
              ++L  H  I +   +      + W  + +    E  +   +  N +  +++  + G 
Sbjct: 182 KHPKDLLNHRCIGWRPKLNN--RPYYWEFSENEKDFEVSVEPQVTTNDFRLMLRVALAGG 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI    +   +       LV ++E+ +      YF YP     + KL+A  +F+    + 
Sbjct: 240 GITFATEETFRPFIKTGKLVPLLEEFLPTFSGFYFFYPNRENMSPKLRAMVDFV----KS 295

Query: 297 WK 298
           WK
Sbjct: 296 WK 297


>gi|120610766|ref|YP_970444.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120589230|gb|ABM32670.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 342

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 133/288 (46%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V R  SF  AA +L  S + +S++I  LE E+ +KL +R  R + +TE+G +
Sbjct: 45  DDLRVFTAVVRKASFAGAAAELGASPAYVSKRIRLLEEELAVKLLHRTTRRVAVTEEGER 104

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +    +    E+  +  +P G LR++ +   G+ ++   +   +  +P +Q++
Sbjct: 105 VFHWAQRILDDWDQLLQEVAVTRREPRGLLRVSCSFGFGRRIVAPAVSRLVERHPGLQVR 164

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  IR+   I +  LI R+L   H    AAP YL     P ++ +
Sbjct: 165 LEVFDRLVDVAGEGFDLDIRVGDEI-APHLIARRLAGNHRVLCAAPGYLARKGTPRAVDD 223

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ +   +               DR +       L  N     +Q+ V G GI L  
Sbjct: 224 LAGHDCLVIKERDHPFGVWRLRSGAADRTVKV--RGSLSANHGEMAVQWAVDGRGIVLRS 281

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LVR++ +    +  V+  YP  L+ + K++    F+
Sbjct: 282 LWDVGPDLATGRLVRVLPEWQQEA-NVWAVYPTRLERSAKVRVCVEFL 328


>gi|87118749|ref|ZP_01074648.1| Helix-turn-helix, Fis-type protein [Marinomonas sp. MED121]
 gi|86166383|gb|EAQ67649.1| Helix-turn-helix, Fis-type protein [Marinomonas sp. MED121]
          Length = 295

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 135/294 (45%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++ +F  VA   SFT AAE L + +++++  I  LE+ +G++L  R  R + LT 
Sbjct: 1   MDKFKEMLIFSRVAERNSFTLAAEDLAVPRATVTNGIKRLESRLGVRLLERTTRQVRLTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +    ++  +LE  +         P G LR+     L ++ +   L +FL  YPD
Sbjct: 61  DGEQYYEKCIKLLGELEEVENSF--LKHSPKGVLRVNLQGTLAKHFVIPRLPDFLKRYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I +  D++ ID+  +  DC +R  + +Q SSLI + L  + +   A+P YL     P 
Sbjct: 119 IKIHIAEDDRLIDLVKEGIDCVLRAGE-LQDSSLIVKPLTQLEIVTVASPEYLDQYGTPK 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +  L  HN I +   +     +F++L   ++ +     S + V+           G G+
Sbjct: 178 DLNALQGHNGIAYSLDVKARPSEFDFLVK-NKLVSVNLNSLVAVSGAEVYTASAKAGLGL 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y ++   +   LV I+     PS  V   YP     + +   F +++  
Sbjct: 237 IQVPKYRIRHELETGELVPILTQFSVPSMPVSALYPHKKHLSQRTGVFVDWLAE 290


>gi|153007799|ref|YP_001369014.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151559687|gb|ABS13185.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 304

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 134/300 (44%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 60  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDKYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 120 DIEVRLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVICAAPAYLEKHGVP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S  EL  DKH+ +      P   E F  L T +             +    + Q+ + G
Sbjct: 179 QSPDELLGDKHDCLLL--RFPGSKEYFWSLQTAEGLRKFEVTGPFDSDDGDVLTQWALGG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P + VK+   +  LV I+E        +   YP       K++   +F+  + +
Sbjct: 237 RGIINKPLFEVKEYIRDGRLVPILESTPPAPIQLAAIYPHKRFQDPKVRLIIDFMTERCQ 296


>gi|153832005|ref|ZP_01984672.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148872003|gb|EDL70826.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 291

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 137/292 (46%), Gaps = 9/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              ++VF  V   GSF +AA    +S + + + +S LE  +G +L +R  R  +LTE G 
Sbjct: 4   LTSMKVFAYVVEHGSFRNAAHHFDISPTMVGKHVSFLEQSLGTQLIHRTTRKQSLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +   +  +Q    +P+G +++   +  G+ ++   + +FL  +PD+ +
Sbjct: 64  LYYQECHRIIEDITNAENLIQTLINRPTGTVKVNCPVTYGKKVIAPIVADFLAEFPDLNV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+LDN  ID     AD  IR+ + +  SSL+ RKL   HM   A+P YL+      S++
Sbjct: 124 ELMLDNNLIDPYRSEADVIIRIGE-LVDSSLVARKLGEYHMTYCASPSYLEQHEPIQSLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H+ + F     +  +  N  +           + L  N+   +    + GSG+ L 
Sbjct: 183 DLEHHHCLGFQYHQGESQQVVNMPSNTFGNSN----TRLTSNNGDVLKFAALKGSGVLLQ 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V+    +  LV I++        ++  Y  + + + K + F  F+  +
Sbjct: 239 PKILVEQEIQSGALVEILQQHAPKPKPIHLLY-RSKQLSLKNRTFVEFVLSE 289


>gi|326388315|ref|ZP_08209911.1| putative transcriptional regulator [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326207047|gb|EGD57868.1| putative transcriptional regulator [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 301

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 133/294 (45%), Gaps = 8/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     ++ VF  VAR GS   AA  L L+ S++SR ++ LE  +G++L  R  R L LT
Sbjct: 1   MDNRLGEMEVFLAVARQGSLARAASHLRLTPSAVSRTLARLEARLGVQLIARTTRALALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    +    +  ++++ + +       PSG+LR+  ++  G + L   L EF   YP
Sbjct: 61  AEGESYRQRVEGLVEEIDSIERDFGTLEQGPSGRLRVNASVPFGTHCLIPILPEFQREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + L L +  +D+    AD AIR+  P++ S L  RKL    M   A+P YL    EP
Sbjct: 121 AITVDLALTDTVVDLVDARADIAIRIG-PLRDSRLRARKLGHSRMAVVASPEYLARHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  + F     + ++ + +L   +      R      NS   +    V G G
Sbjct: 180 ATPADLADHACLRFS--FRRSIDSWPFLIDGETVPMVVR-GPFLGNSGEVVRLMAVAGGG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V  +     LV I++         ++  Y    +   +++AF +F+
Sbjct: 237 IARHARFHVGADLAAGRLVEILKPFNPGDGEDIHALYVGHDRLAARIRAFLDFL 290


>gi|325275780|ref|ZP_08141652.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099085|gb|EGB97059.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 315

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 132/292 (45%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA+ GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRESHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + N+  D+  +  D +I L   +  S  + ++L   +    A+P Y+     P 
Sbjct: 121 VTFDLTMANRVPDLLDEGYDVSIVLATELPDSGFVSQRLGITYSIVCASPAYIARHGLPH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L KH  +     +   +E + +     + +     S   VN+  ++      G G+
Sbjct: 181 KPADLLKHACLRMVSPVIP-LEKWLFDGPEGQEMVNITSSPFMVNTADAMKTAIRSGMGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP Y   D   + +LVR++ +       +Y  YP       K+K +  ++
Sbjct: 240 GVLPIYSAIDGLRDGSLVRVLPEYRLQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|319790788|ref|YP_004152428.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593251|gb|ADU34317.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 303

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A +G FT AA    ++ +++SR IS LE  +G++LF R  R + LT+ G    
Sbjct: 13  IELFCLAAETGGFTSAALAAGVTPAAVSRSISRLEKRLGLRLFVRTTRSVRLTDAGRSYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   + E+     +PSG LRI+     G + +   L  F   YPDI++ + 
Sbjct: 73  AQCRQALAQLAEAEREVMGQQAQPSGTLRISVPTTYGHHRILPMLPAFRERYPDIRLHVH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID   +  D A+R+R     S+LI R L    +   A   YLK    P +  +L 
Sbjct: 133 LSNRNIDFVEEGYDMAVRVRAQ-PDSTLIARHLEDAALVVVATRKYLKAAGTPRTPDDLA 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI--MQYCVLGSGIALLP 245
            H  I F   +P      +WL   +    E         S   +  +     G+G+    
Sbjct: 192 AHECIQFE--LPSSGRRISWLFKEEGQDREVLADSAYSCSDDVLGGVTLAKSGAGLFQTY 249

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++V+    + +LV +++     S      YP+      +++ F +F+  +
Sbjct: 250 RFVVQKELADGSLVEVLKPFAGRSRPYTLLYPDGRHAPLRMRVFIDFLMAQ 300


>gi|261253365|ref|ZP_05945938.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
 gi|260936756|gb|EEX92745.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
          Length = 303

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 145/293 (49%), Gaps = 6/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V   GSFTHAAE L +++S++SR+++ LE  +G++L  R  R L LT +
Sbjct: 1   MDLNGVNVFVQVVDCGSFTHAAESLRMTKSTVSRKLAELEQHLGVRLITRSTRSLVLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K ++   ++   +   ++E+  +     G L I   ++LG  +L   + +FL+ YP++
Sbjct: 61  GEKFYQSGLQMLEVMNQAELEVSANQDLVRGPLNIVLPVELGHQVLGSYINQFLMQYPNV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L N+++DI  +  D   ++ K ++ S+L+ R L        A+P YL+       
Sbjct: 121 TMNLELSNREVDIVGEGIDLYAQIGK-LEDSNLVSRYLTASKRALVASPDYLEEYGMIEH 179

Query: 183 IQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L   H ++   +   + +  ++     D          L+VN+  + ++  + G GI
Sbjct: 180 HLDLIAPHQMVEVSNKAVR-LPKWHLQLDDDSSYQIDLPYRLRVNTITACLKASLDGLGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A+LP++I +++     LVR++ +   P   V   Y +      + K   +F+ 
Sbjct: 239 AVLPEFICREHFATGRLVRLLPEYRMPEVEVSLVYADRQLMPKRKKELIDFLL 291


>gi|160895812|ref|YP_001561394.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361396|gb|ABX33009.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 307

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 7/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A +GSF  AAE+L L++S++ + ++ LE  +G +LF R  R L LTE G   +  
Sbjct: 14  AFVASAEAGSFAQAAERLGLTRSAVGKAVARLEERLGARLFVRTTRSLGLTEDGQMFYER 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            ++    L+  +  L+    +  G+LRI+  +  G++ +   L E   L+P ++I+    
Sbjct: 74  CAQALEDLDAARHMLEAGRREVVGRLRISAPVVFGRHHVAPLLLELAQLHPRLRIEASFT 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D + D  D AIR  +   S  L+ R+L    M   A+P YL+    P S+ +L  H
Sbjct: 134 DRQLDFADDGIDLAIRSGELPDSDWLVARRLGMQTMVLCASPAYLQAHGAPRSVADLAGH 193

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             I +            WLA  D  +  P +   L  +   +I    + G+G+A +P + 
Sbjct: 194 RCIAYMRSGRAAPW---WLAGEDGSLAAPVLEPALGFDDIETIATATLQGAGLAHMPLWR 250

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           V+   D+  LVR++ DV      ++  +P       +L+   + +   
Sbjct: 251 VRSALDSGALVRLLPDVPAARIPLHVLWPRTRFLPYRLRVTIDALLAA 298


>gi|152994718|ref|YP_001339553.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835642|gb|ABR69618.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 297

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 136/296 (45%), Gaps = 12/296 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  V   GS T AA+ + +S+  +S  +  LE ++G+KL  R  R L
Sbjct: 1   MEVSFEQLKSMVVFAQVVEQGSLTAAAKFMGISRGVVSYHLKKLEEQLGVKLLNRTTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G   ++    +  +     ++++++  +P GKL+I+  ++LG  ++   L EF  
Sbjct: 61  SLTETGEAYYQRCRAIAFQAHEANLQIEKAKQEPEGKLKISCPVNLGLQVIVPALNEFRR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP I++ + L ++ ++I  D  D AIR   P+  S L   KL T       +P Y +  
Sbjct: 121 LYPLIELNVSLSDEVVNIIKDGVDLAIR-GAPLLDSGLQASKLKTFETCLCGSPEYFRRR 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P   +EL  H+ + +             L+  D+         +  N+  +   +   
Sbjct: 180 GRPTKPEELYDHDWVVYTPAANTVH-----LSQGDKSFSLSVHGGVSTNNAAARTIFLEG 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+GI  +P Y       N +L RI+ D       VY  +P     + KL+   +F+
Sbjct: 235 GNGIGRIPMYDALPRIANGSLERILSDYKCTGIDVYAVFPPGTAESKKLRLLLDFL 290


>gi|89053378|ref|YP_508829.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88862927|gb|ABD53804.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 306

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 9/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   +  F   AR  SF+ AA+ LH+S  ++S+ I  LE ++  +LF R  R + LT +
Sbjct: 2   IDLRLIETFIQAARRESFSSAAKALHVSPGAVSQNIKSLEEQLQTRLFTRTTRQIKLTPE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +  +     L+T    +Q+      G+LRI +T   G+  +   +  F   +P++
Sbjct: 62  GQRFLQRCAPAVEALQTAASAIQDEREAFQGRLRITSTTAFGRAEILPLIASFQETHPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L L +  +D+  +  D AIR    +  S  I R L+ +     AAP YLK    P +
Sbjct: 122 EIELSLSDGFVDLVAEEYDLAIR-GGILPDSDYIARLLIPVTPLVCAAPGYLKKFGIPKN 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +L  H LI       + +  F W  +     +P          +N   S ++   LG 
Sbjct: 181 EADLASHRLIGMRSNPSQRV--FAWEFSDPDSPQPRRVEVTPTSVMNDPESTVRAASLGM 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+A +   +V     +  L  +  +    S  +Y  YP       KL AF + + 
Sbjct: 239 GLAQVGSNVVLPLVASGELRIVFPEAAVQSRGLYAVYPSKRFAPKKLTAFLDHLV 293


>gi|78066847|ref|YP_369616.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967592|gb|ABB08972.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 297

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +  F   A +G+FT AA  L LS S++S+ ++ LE E+G++LF+R  R +TLT 
Sbjct: 1   MDPFTDISTFVRAAEAGNFTRAARLLQLSPSAVSKAVARLEAELGVRLFHRSPRQITLTG 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G     V  +    +   +  L  +S    GK+R+   +  GQ +L   L ++L  +P 
Sbjct: 61  DGELFFAVCRQGMTDIADARSRLAGASQPWRGKMRLCVPVSFGQYVLAPALGDWLGAHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L ++ +D++ +  D A+ L + +  S L+ R L        A+P YL++   P 
Sbjct: 121 LDIELALTDRHVDMTAERFDLAVMLGE-VPDSRLVARPLPAHRFVTVASPAYLQSRGVPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + +  +      D+ ++   D+    P +  L  +   +++     G GI
Sbjct: 180 TPDDLVNHTCLRYVMVNSGQFRDWMFVRGGDQYSHFP-VGPLASDHVSALLALSEAGGGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P Y+V  +     LV ++ D  +    +   Y +A + + + +   +F+  
Sbjct: 239 LQAPHYVVAPSLAAGRLVPVLSDFKSIGAPLSVVYEKARQASARTRLAADFLLA 292


>gi|317401669|gb|EFV82294.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 307

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 142/299 (47%), Gaps = 8/299 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA +GSF  AA +L LSQ+++S+ I+ LET++   LF+R +R ++LTE G
Sbjct: 6   DLEGWAIFAKVADTGSFAKAAAELSLSQATVSKTITRLETKMKTMLFHRTSRSMSLTESG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  + E+ E S    GK+R+A  +  G   L   L  F+  +PD+ 
Sbjct: 66  YAALERAARILEEGEAVEAEVTEKSTSLRGKIRLAAPMSFGVTHLAPMLPPFMQAHPDVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  ++K  D+  +  D A+R+   +  S+L+ R+L ++ +    AP Y K    P   
Sbjct: 126 LEIEFNDKQSDLVSERFDLALRISN-LVDSTLLARRLCSVRILLVGAPSYFKRAGRPKHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  + +  +  +    + +         +     L VN+  ++      G G+AL
Sbjct: 185 RDLAQHTALQY--MYARNGSSWRFRHDKHGEFSQSLPVQLNVNNAEALSPALQAGLGLAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK--ARDW 297
            P+++  ++     L   M+D       ++   P   +   +++A   ++  +  A  W
Sbjct: 243 QPEFLAWEDLQSGALETAMDDWQVDPIALHIVTPPGRRRPARVQALIEYLAERLTAEPW 301


>gi|329903351|ref|ZP_08273444.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548429|gb|EGF33107.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 305

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 124/292 (42%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +L  F  +   GSF+ AA    ++ + I R++  LE  +G+KL  R  R + LT 
Sbjct: 1   MDQFKQLSTFVEIIAKGSFSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIALTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +  +LE  ++ +   +   SG L I+     G+  +   L  FL  + +
Sbjct: 61  EGSSFLEDCQRILAELEQAELAVSAGARAASGHLTISAPAGFGRQHVAPLLPSFLAEHRE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L+++  D+  +  D AIR+   +  SS++  KL        A P YLK    P 
Sbjct: 121 VSLTLSLNDRIADLLGEGIDVAIRIAA-LTDSSMVGVKLAENKRVVVATPAYLKRHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  HN +       +    F       + +       +  N    +  + + G G+
Sbjct: 180 ALDQLTGHNCLAISSDGSQRGWTFR---QHGKNVTIKVAGNMACNDGQVLHDWALAGKGL 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    + V    +   LV ++++   P   +Y  + +      +++ F +F+
Sbjct: 237 SWRSMWEVAGEIEAGRLVTVLDEFAAPGNDIYAVFAQRRHLPLRIRVFIDFL 288


>gi|296159034|ref|ZP_06841861.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295890595|gb|EFG70386.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 312

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 135/308 (43%), Gaps = 14/308 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +++RVF  V  SG+FT AA  L+ S  +ISR ++ LET +  +L  R  R + LT 
Sbjct: 1   MDTLNQMRVFARVVESGTFTAAANTLNTSPGAISRAVAELETRLRTRLLNRSTRKVALTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++   +E  + E  ++  +P GKLR+ +   +GQ  +   +KE+   YP+
Sbjct: 61  AGEIYLQRCKQILADVEMAEEEASDAQSRPMGKLRVHSFTGIGQYYVLPAIKEYRSRYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L  +  ++     D A +     +  S L+   L +      A+P Y+     P
Sbjct: 121 VSVELTLSQRAPELYKGSTDIAVVATSSALPDSDLVSHLLGSSFSVLCASPDYVHQRGMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            S ++L +H  +            + WL   D      ++S  +++N+  +I        
Sbjct: 181 DSPEQLARHECLILHS---PAFPAYEWLLESDNGSESMKVSGAVELNTPEAIGMAARASM 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK--- 293
           GI +LP Y   +   N  LVR++         +Y  +P       ++K +  F+      
Sbjct: 238 GIGVLPIYTALEGLSNHTLVRVLPGYTLQKMNIYALHPSRRYTDARIKTWVEFLRQHLPT 297

Query: 294 --ARDWKF 299
             ARD + 
Sbjct: 298 VTARDAQL 305


>gi|126443454|ref|YP_001061685.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126222945|gb|ABN86450.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 303

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 133/295 (45%), Gaps = 12/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F VVA +G F+ AA QL  + SS++R +  LE  +G+ L  R  R +TLT+ G+  
Sbjct: 6   ALQTFAVVADTGGFSKAARQLGTATSSVTRLMDALEASLGVTLLTRTTRHVTLTDAGATY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L      + ++  +P G LR++  +   + +L  +L  FL  YP + + L
Sbjct: 66  LEQVGALLSQLVEADESVADAGGEPVGTLRVSVPVTYARIVLGPHLSAFLDAYPRVSLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +  +D++ D  D A+R+  P +   L+ R L        A+  YL     P +  +L
Sbjct: 126 AVSDAYLDLATDRIDVAVRIGAPSRDPGLVVRGLAPNRRIVVASRDYLDRMGTPAAPGDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  + F    P      +W  + D    +  +   L  NS   + +  + G G+AL+P
Sbjct: 186 AAHRCLRF----PYRQGRQSWTFSRDGHSEKIDVGGRLTANSLDILREGVLSGQGVALVP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLK 293
            ++V D+     L+ + E            VY  Y    +++ K++ F  F+  +
Sbjct: 242 MWLVHDDIVAGRLLPLFESWRVTPPGGDAQVYAAYLPNRRHSRKVQTFIAFLAQR 296


>gi|326385562|ref|ZP_08207196.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209896|gb|EGD60679.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 307

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L +F  VA  GSF+ A   L L+ S++SR I  +E  +G++L  R  R LTLT +G+ 
Sbjct: 19  RSLELFATVAAEGSFSAAGRVLGLTPSAVSRAIDRIEVRLGVRLLLRSTRALTLTTEGAA 78

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R    +   L+  +  + +S   P G+LR++  +  G+  +   L EF  LYP I + 
Sbjct: 79  YLRAARRILGDLDDAEQAIADS-AAPRGRLRVSAALAHGRLCIVPLLGEFARLYPHILVD 137

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +DI    AD AIR   P+  S+L  RKL        A+P YL+    P   ++
Sbjct: 138 ISLGDRLVDIGAGQADVAIRFG-PLADSTLTARKLGENRRVVVASPAYLERHGTPQVPED 196

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F     + +  F       R         ++ N+  ++ Q    G GIA + 
Sbjct: 197 LHDHNCLGFNFRRAEPVWPFR---KDGRDYALNVRGSIEANNGETLGQLAADGVGIARVG 253

Query: 246 DYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + V  +     LV I+E         ++  +        +++ F +F+  + R
Sbjct: 254 AFSVAHDIAAGRLVPILEAYNPNDVEPLHAVFAGGPNMPARVRVFVDFLVDRLR 307


>gi|169794243|ref|YP_001712036.1| putative transcriptional regulator; transcriptional activator
           [Acinetobacter baumannii AYE]
 gi|215481801|ref|YP_002323983.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter
           baumannii AB307-0294]
 gi|239502768|ref|ZP_04662078.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter
           baumannii AB900]
 gi|301509960|ref|ZP_07235197.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter
           baumannii AB058]
 gi|332850321|ref|ZP_08432655.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332871571|ref|ZP_08440065.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169147170|emb|CAM85029.1| putative transcriptional regulator; transcriptional activator
           [Acinetobacter baumannii AYE]
 gi|213988055|gb|ACJ58354.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter
           baumannii AB307-0294]
 gi|332730779|gb|EGJ62089.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332731425|gb|EGJ62717.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 300

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 144/300 (48%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT
Sbjct: 1   MKSTIEELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YP
Sbjct: 61  QEGQQFLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+I+L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P
Sbjct: 121 DIEIELNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL+ H+LI F    P  +  +      +    + +I   + +S  ++ Q  + G G
Sbjct: 180 TQPEELEHHDLIGFTR--PTYINSWPIKVGDEYFFAQSKI---KASSGETVRQLTIRGHG 234

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ +    +   L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|83748573|ref|ZP_00945593.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207743288|ref|YP_002259680.1| hypothetical protein RSIPO_01457 [Ralstonia solanacearum IPO1609]
 gi|83724781|gb|EAP71939.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206594685|emb|CAQ61612.1| hypothetical protein RSIPO_01457 [Ralstonia solanacearum IPO1609]
          Length = 309

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 131/290 (45%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS
Sbjct: 4   FKQLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + + L   +  +    VK SG LR+      G+  +   + +FL  +PD+ I
Sbjct: 64  AFLEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL+    P  ++
Sbjct: 124 TLDLGDRIVDLVNEGFDCAIRLGD-LPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  HN + FG           W+   D      ++   ++      + ++C+ G G+A 
Sbjct: 183 HLAGHNCLAFG---ASANVQRGWVFQQDGKTVTVKVGGTMECTDGAVLREWCLQGHGLAW 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 240 RSWWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289


>gi|317494124|ref|ZP_07952540.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917897|gb|EFV39240.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 308

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   + R GSF+ AAE L  + + ++++I  LE   G KL  R ARG+ LT+ G +
Sbjct: 14  KDLQVLVEIVRCGSFSAAAESLGQTPAFVTKRIQILENIFGTKLLNRSARGVALTDSGKQ 73

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  +L+    +L ++  +P+G +RI  +   G++ +   + + + LYP++QI 
Sbjct: 74  CYEQGLNILTQLQKLMDDLGQTKTQPAGMVRIGCSFGFGRSHIAPAITQLMQLYPELQIH 133

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+S D  D  IR+   I   + I R L        A+P Y +    P ++ E
Sbjct: 134 FELFDRQIDLSRDNIDIDIRINDEIPD-NYIARLLAKNKRILCASPKYFEKRNPPQTLTE 192

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +          W    +      +IS  L  NS   I+++ + G GI + 
Sbjct: 193 LLEHDCLITKERDSTAG---IWELECEHEKKTVKISGHLSSNSGEIILRWALEGKGIMMR 249

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ V    ++  L+R++ +  + S  ++  Y + L  + KL+   +F+
Sbjct: 250 SEWDVVPFLNSGKLIRVLPEY-SQSANIWAVYQKPLYQSAKLRVCVDFL 297


>gi|154246871|ref|YP_001417829.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160956|gb|ABS68172.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 292

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 131/289 (45%), Gaps = 9/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              ++VF  V  +GSF+ AA Q+ + Q +IS+ I+ LE  + ++L  R    L  T+ G 
Sbjct: 4   LQAMQVFVTVVEAGSFSAAARQIGVGQPAISKTIAQLEERLQVRLLVRSTHSLAPTDAGV 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +        + +  ++E + +    SG+LR++      + L+   L EFL  +PDI+I
Sbjct: 64  RFYERARAAIREADEAELEARGAGAGLSGRLRVSAATTFARLLIVPRLPEFLARHPDIEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++LD++ ID+  +  D A+R+ + +  S+ I R++        A P YL     PL   
Sbjct: 124 DVLLDDRVIDLVSEGIDMALRMGE-LTDSAAIARQIARSRRSVIATPAYLSRAGTPLVPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I +  L                         +++++   I    +   G+ + 
Sbjct: 183 DLATHEAIVYSQLGASWT-----FRRNGTEASVAVRGRVRLSAAEGIRAAVLADLGLTVN 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D++     ++  + R++ED   P   ++  +P     + K +AF +++
Sbjct: 238 SDWMFAPEIESGAVRRVLEDWELPPVDLWAVFPTGRLASAKARAFADYV 286


>gi|195873787|ref|ZP_02698999.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|204928657|ref|ZP_03219856.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205359577|ref|ZP_02830572.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205360334|ref|ZP_02682632.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|195632270|gb|EDX50754.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|204322090|gb|EDZ07288.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205344560|gb|EDZ31324.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350333|gb|EDZ36964.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|320088026|emb|CBY97788.1| probable RuBisCO transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 300

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 7   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 67  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 127 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 186 ASHAVVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         V   YP     + ++  F  ++    ++
Sbjct: 245 IAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKE 297


>gi|114326958|ref|YP_744115.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315132|gb|ABI61192.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 468

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 140/299 (46%), Gaps = 8/299 (2%)

Query: 1   MSF--DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M F  D +   VF  VA SGSF  AAE+L LS+++IS+ I+ LE  +G  LF R +R L+
Sbjct: 161 MPFLPDLEGWAVFARVADSGSFAGAAEELGLSRATISKIIARLEGRIGAALFNRTSRRLS 220

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LTE G         +  + +  +   + SS  P G +RI+  +  G   ++  L + L  
Sbjct: 221 LTEVGRASLERALSMLEQAQGLEENARSSSAAPRGLVRISAPVSFGLMHVRPLLPQLLAE 280

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P I I L LD+  +D+     D AIR+ + +  S L  R++  + M   AAP  L+  R
Sbjct: 281 HPGIDIDLRLDDAVVDLVAGGYDMAIRIAQ-MPDSGLRVRRIARMQMKIVAAPSLLERVR 339

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P   ++LD    + +G             +T +     P    L+ N+   +++    G
Sbjct: 340 -PEHPRDLDMALCLGYGHGTMAGRWRLRRESTGEEASLLP-AGRLRTNNGEIMLEAARSG 397

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G AL PD+++ D+     LV ++ D   P   +    P +L    ++ A  +F+  + 
Sbjct: 398 QGFALAPDFLIWDDLTAGTLVPVLTDWSLPLLELNIVLPPSLLRPARIAAVASFLTGQL 456


>gi|148253786|ref|YP_001238371.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405959|gb|ABQ34465.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 297

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 129/292 (44%), Gaps = 4/292 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L+ F  V R  SFT AA +L +SQS++S  I  LE+ +G++L  R+ RG+  TE G 
Sbjct: 6   LDHLKAFKAVGRERSFTKAAAKLGVSQSALSHTIRELESRLGVRLLTRNTRGVNPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R  +     +E     L++   +P+G +RI+      + +L   LK  L  YPDI +
Sbjct: 66  RLLRTVAPRLDDIEAELASLRDFQDRPAGTIRISAGDHAVRAILWPKLKRLLAAYPDINV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+ DNK +DI  +  D  +RL + +    +  R    I      AP YL     P    
Sbjct: 126 ELVSDNKLVDIVEEGFDAGVRLGEQVAKDMIAVRISPDIRFAVVGAPSYLDGRSPPERPD 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I         +  +       + +       L  NS   + +  + G G+A +
Sbjct: 186 DLVGHRCINLRLSTHGGLYAWE-FEKRGKELKVRVEGQLAFNSIFEVYEAALAGFGLAYV 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P+ +V  +     L R++ED   P    +  YP + + +       + +  +
Sbjct: 245 PEDMVLADVAGGRLRRLIEDWCVPWTGYHLYYPISRQTSAAFDLVVDALRHR 296


>gi|325518369|gb|EGC98091.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 324

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L  
Sbjct: 121 RYPEVKVHIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLNQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L     +    +  + +  FN +A             L     ++I +  +
Sbjct: 181 NAPPLVPDDLAHFETLDTPSVDGRHV--FNLIAPDGTRHVHEHDPRLVTADLMTIREAAL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|296115882|ref|ZP_06834506.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977570|gb|EFG84324.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 306

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 6/296 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D++   +F  VA  GSF  AAE++ LS+ ++S+ I  LE  +G+ LF R++R ++L
Sbjct: 1   MRLPDFEAWAIFAKVAEFGSFARAAEEVQLSKPTVSKAIGRLEQALGVALFNRNSRHISL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G  L    + +  + E  + E +  + +PSG +RIA  +  G   L   L  FL  Y
Sbjct: 61  TEMGRMLLGHANRILAEAEAAETEARGGTQRPSGLIRIAAPMTFGIGHLSPVLPAFLAKY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI I +   +  +D+  +  D A+R+   +  SSL  RKL  + +   A+P YL     
Sbjct: 121 PDIDITVDFSDALVDLVAEGYDVALRIAS-LADSSLRARKLCEVRLLLVASPEYLDRVGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++L+ H    + +           +          +    + ++  + +     G 
Sbjct: 180 PDHPRDLETHKSFVYTNTSAPGKVRLRQVNN-GNEFVLTQTPRFRADNAEAFLPALAAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G  L P+++V +   +    RI+ D   P+  +Y   P +     ++ A  +++  
Sbjct: 239 GFGLFPEFMVGEGLASNRFERILPDWEAPAIALYLVTPSSSLRPVRVTALLDYLVE 294


>gi|213969611|ref|ZP_03397747.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301384839|ref|ZP_07233257.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059204|ref|ZP_07250745.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130843|ref|ZP_07256833.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213925707|gb|EEB59266.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 297

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 7/293 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS    + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +  
Sbjct: 1   MSIPKLNDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L R    +  ++      L E   KP+G +RI  + D  + +L+  L  FL  Y
Sbjct: 61  TEAGEQLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDIQI++ +D    +I  +  D  IRL + I    +  R      +    AP Y +N   
Sbjct: 121 PDIQIEVCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFENHPV 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLG 238
           PL  Q+L +H  I            + W    D R +          NS + ++   + G
Sbjct: 181 PLQPQDLTQHTCINIRHSPNGSC--YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            G+A +P  + +   ++  L  ++ D        +  YP   + +    AF  
Sbjct: 239 VGLAYVPISLARPHLESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAFIE 291


>gi|116250116|ref|YP_765954.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254764|emb|CAK05838.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 296

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 136/296 (45%), Gaps = 9/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+ + L +F     SGSFT AA  L + +S++S++++ LE  +G++L  R +R   LTE 
Sbjct: 4   FNLNDLHLFVQAVDSGSFTAAARHLGIPKSTVSKRVAELEARLGVRLIQRTSRSFALTEL 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +       + E  +  ++    +P+G +R+  ++   Q  L  +L    + YP +
Sbjct: 64  GREFFQHAQASIIEAEMAEGIVRRHLAEPAGSVRLTASVPTAQFTLTEHLPALAVRYPKL 123

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ + + ++ +DI  +  D A+R  R P+  S+L+QRKL +      A+P Y+    +P 
Sbjct: 124 RLSVHVTDRFVDIVQEGFDIALRSHRTPLPDSALVQRKLASHPFFILASPDYVSVHGQPR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H  I          ED   L +    +     S +  +    +M+  + G GI
Sbjct: 184 RPEELAQHATIM-----TSLTEDLWRLYSGGDEVLVALQSVMAADEPYVLMEMAMSGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP  + +    +  LVR++ +    S       P        ++A  +F+  + 
Sbjct: 239 TCLPTSVCRKALADGRLVRVLPEWTAGSIETTILMPHRRGQLPAVRAVVDFLAERL 294


>gi|299068859|emb|CBJ40100.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 293

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 11/301 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  V ++  F  AAE L +  S++SR+I  LE  +G++L +R  R + LT
Sbjct: 1   MMDHLNDMALFVEVVKAKGFRGAAEALGMPNSTLSRRIGALEKAIGLRLLHRTTRKIELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +  +      +L E   +PSG LR +  +D     L   + EF  LYP
Sbjct: 61  EAGLIYFERCKRIVDEARLAHEQLGELLAQPSGVLRASLPVDFAVTYLAPLIAEFASLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I     L  + +D+  +  D AIR+ +P ++S LI R L ++  + YA+P YL+   EP
Sbjct: 121 GITFDFDLTPRQVDLVSEPFDVAIRMGEP-ENSQLIARPLASLQANLYASPAYLERSGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +H  +    +    + +     TV      P      +NS   I +   L  G
Sbjct: 180 RTPADLGRHECLGMLKVGSWTLHEGAHTVTV------PVGGRFTLNSVGMIRRLATLDMG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I L+P+ IV D+     L  +M         VY    E      K + F  F+  +    
Sbjct: 234 IILVPEEIVADDLAAGRLRHVMPGWHGKPMPVYAIT-ETRLLPAKTQRFIEFLRERLAQR 292

Query: 298 K 298
           +
Sbjct: 293 R 293


>gi|317053070|ref|YP_004119424.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953397|gb|ADU72868.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 295

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 124/286 (43%), Gaps = 4/286 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + ++ F  VAR  SFT AA  L +S S++S  +  LE  +G++L  R  R +  TE G K
Sbjct: 2   NDIQAFIAVARERSFTKAAAMLGVSPSALSHTMRNLEERIGVRLLARTTRHVAPTEAGEK 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + ++ ++ +    + E    P+G +RI  + +  + LL+  L  FL  YPDI ++
Sbjct: 62  LLLSVAPLFEQINSEIERIAELRATPAGNIRITCSDNAAEELLRPMLPAFLAQYPDISVE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +D    +I  +  D  IRL + I    +  R      +     P Y +    PL+ Q+
Sbjct: 122 ICIDYGFTNIVSERFDAGIRLGESISKDMIAVRMGPDWRLVVVGTPEYFQANPVPLTPQD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  I         +  +       R +       L  NS L +M   + G G+A +P
Sbjct: 182 LARHRCINIRHSPAGSVYAWE-FEKEGRKLNIRVNGPLISNSILHVMNGALDGIGLAYVP 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           D + + +     LV ++ D        +  YP     +    AF +
Sbjct: 241 DAMAQPHIAAGRLVEVLSDWSPLFEGFHLYYPNRRNTSSAFAAFVD 286


>gi|296104957|ref|YP_003615103.1| putative DNA-binding transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059416|gb|ADF64154.1| putative DNA-binding transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 308

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 132/291 (45%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVELGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L     E L  YP + +
Sbjct: 64  IYYQGCRRMMHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAAMTAEMLKEYPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L ++ M   A+  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGSMPMVVCASKSYLAQYGVPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +        E         R + E R      N  ++I ++ V G+GIA +
Sbjct: 183 DLANHSWLEYSVRPDNEFELIAPEGISTRLLPEGR---FVTNDPMTISRWLVAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++ +  +  L  +     +    VY  Y E  K   K++   N++  
Sbjct: 240 PLMWVINEINSGVLEILFPRYQSDPRPVYALYTEKDKLPLKVQVCINYLTE 290


>gi|225626606|ref|ZP_03784645.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|256158753|ref|ZP_05456623.1| transcriptional regulatory protein [Brucella ceti M490/95/1]
 gi|256254145|ref|ZP_05459681.1| transcriptional regulatory protein [Brucella ceti B1/94]
 gi|260169643|ref|ZP_05756454.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99]
 gi|261221290|ref|ZP_05935571.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261759175|ref|ZP_06002884.1| bacterial regulatory protein LysR [Brucella sp. F5/99]
 gi|265997251|ref|ZP_06109808.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|225618263|gb|EEH15306.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|260919874|gb|EEX86527.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261739159|gb|EEY27155.1| bacterial regulatory protein LysR [Brucella sp. F5/99]
 gi|262551719|gb|EEZ07709.1| transcriptional regulator [Brucella ceti M490/95/1]
          Length = 297

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G
Sbjct: 5   NLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI 
Sbjct: 65  ERLLAQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   
Sbjct: 125 IELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   E F W  +   + I       L   S   ++Q C+ G G+A
Sbjct: 185 QDLSDHDCINL--RLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP        ++  LV ++ D        +  YP   ++   L A    +
Sbjct: 243 YLPRDYAARHIESGALVEVLADWCKTFAGYHLYYPNRRQHPPALAALIEAL 293


>gi|239815885|ref|YP_002944795.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802462|gb|ACS19529.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 320

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 137/291 (47%), Gaps = 10/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  SG F+ AA  L ++ S++S+ ++ LE  +GI+L YR  R L LT +G   
Sbjct: 11  EMEAFVQVVESGGFSAAARLLDMTPSAVSKLVARLELRLGIQLVYRSTRKLQLTPEGLHF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  ++ V   ++  +     +   P G++ I  ++  G + L   +   L L+P I + +
Sbjct: 71  YERSTRVLADMDEAER-CAAAGAAPRGRVSINASVSFGHHKLVPLVPRLLELHPQITLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  + AD AIR  + +  S L+ R+L        A+P YL     P + QEL
Sbjct: 130 ALTDRIVDLMDERADIAIRWGQ-LPPSDLVARRLGETSQSIVASPGYLAKYGTPRTPQEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + HN + +     +   D+  L    R I  P    ++     ++ Q  + G+G+A L  
Sbjct: 189 EAHNRLGWS--YRRNTPDWP-LRVDGRMIAVPVAGPVRAGDGETLRQLAIAGAGVARLSL 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFL 292
           Y V+ +     LV ++E+        ++  Y  +A     +++A  +F+  
Sbjct: 246 YHVQHDIDAGRLVPLLEEFNPGEVEPIHAVYIGKAGTLPARVRAVLDFLVA 296


>gi|171320681|ref|ZP_02909697.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171094084|gb|EDT39177.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 325

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L  
Sbjct: 121 RYPEVKVHIRVTNRVIDLFEDSVDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L +   +    +  + +  FN +A             L     ++I +  +
Sbjct: 181 NAPPLVPDDLARFETLDTPSVDGRHV--FNLIAPDGTRHLHEHDPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|91782250|ref|YP_557456.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686204|gb|ABE29404.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 312

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 138/295 (46%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R+F  V  +GSFT AA  L ++   +SR I+ LE+ +  +L  R  R ++LTE
Sbjct: 1   MDTLENMRMFVRVVEAGSFTKAASLLSVATPQVSRAITELESRLRTRLLNRTTRHMSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   +   + E   ++ +PSGKLRI  T   GQ+ L   +  +   +PD
Sbjct: 61  AGERYLQRCEQILEYVGLAEAEAAGAAAQPSGKLRIHGTTSFGQHYLAPLIARYNQRFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L+L  +  D+  +  D ++ + + +  S+L+ +++ T      A+P YL     P+
Sbjct: 121 VLIDLVLAQRVPDMIEEGFDVSVVVARELADSALVSQRIGTTCTVLCASPQYLSKRGMPV 180

Query: 182 SIQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           S+++L+ H  +      +P     F+      +     R + L VN   ++ +    G G
Sbjct: 181 SLEDLNTHTCLQLVLPDVPSGQWIFDGPDA--QVFRHTRSTPLTVNVAEALAEAIREGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP  +      + +LVR+++     S  +Y  Y        K++ F  F+  
Sbjct: 239 IGPLPLSLALQGFRDGSLVRVLDGHRLQSNNIYALYASRQYLDAKIRTFVEFLRE 293


>gi|254523288|ref|ZP_05135343.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219720879|gb|EED39404.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 307

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 131/302 (43%), Gaps = 11/302 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF  V   GSFT  A  L  + S +SR ++ LE  +G +L  R  R +
Sbjct: 1   MSRKFDYLGDVEVFLAVVEHGSFTAGAVALSTTPSVLSRAVTRLEARLGRQLLQRTTRRV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G          +  L+  + ++       +G++R++     G   L   L  F  
Sbjct: 61  GLTDAGRLYLEQVRTAFGLLDDAERDVLAQDGALAGRVRLSVPTTYGHYRLPPVLARFAQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP +Q++L + N+++D+  +  D AIRL + +  S L+ RKL    +   A+P YL+  
Sbjct: 121 QYPQVQVELNITNRNVDLVAEGFDLAIRLGQ-LPDSGLVGRKLEDAPLMLVASPEYLQRR 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYC 235
             P ++ +L +H  + F  ++P+      W+   D    +  PR S    +  L ++   
Sbjct: 180 GAPQTLDDLQQHLCLPF--VMPRTGRLAPWIFRDDGRDVDWLPRSSIETSDDVLGVVSLA 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G GI     +IV++      LV ++  +   S      Y    + +   +A    +  
Sbjct: 238 EQGIGICQSYAFIVRERLQRGELVEVLPQLRGRSRPFSVIYAPHRRQSAAARAMIELLVG 297

Query: 293 KA 294
            A
Sbjct: 298 NA 299


>gi|157371417|ref|YP_001479406.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323181|gb|ABV42278.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 307

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 127/298 (42%), Gaps = 5/298 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  ++     F  VAR  SF  A ++L LS S++S  I  LE  + ++LF R  R + LT
Sbjct: 1   MQPNFSDFASFIAVARYKSFREAGDELGLSPSAMSHSIKQLEQRLKVRLFNRTTRSVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      V+ +  T   E+      P G L+I T+    +  L   +  F   YP
Sbjct: 61  EAGLTLFERLRPVFDEFNTILDEMNCFRDAPMGTLKINTSRLASRLFLLPIIAGFSRKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++++  D+K +DI     D  IRL   ++   +       I +   A P YLK+   P
Sbjct: 121 DIKVEITTDDKLVDIVRQEFDAGIRLNNRVEKDMITVPIGPKIKLVVVATPEYLKHHPAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  + F     +              +    +  + ++   S ++  + G+G
Sbjct: 181 THPCELIHHQSVIFRFQSGRPYLWE--FENPSGKLEVAPVGNIMLDDMDSALEAVLCGAG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  L    VK++     L ++++D +    ++   YP     +G L+AF +++    R
Sbjct: 239 LGYLYYEQVKEHLQSGKLAKVLDDWLPERPSLQLYYPNRQYMSGPLRAFIDYMKETQR 296


>gi|89092571|ref|ZP_01165524.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
 gi|89083083|gb|EAR62302.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
          Length = 294

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 136/292 (46%), Gaps = 12/292 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  +A  GSFT  AE+L LS+S +S++IS LE EVG +L +R  R L LT 
Sbjct: 1   MDKLRAMSLFIRLAERGSFTEVAEELGLSKSMVSKEISRLEAEVGARLIHRSTRSLQLTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++  +++  +  +Q +   P GKL+I   + LG + L     +F+  YP+
Sbjct: 61  IGEGYLRHCHDILERIDDAESFVQGAQDLPRGKLKINAPMALGISHLSQVFSDFMREYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + LD+  +D+  +  D   R       S  + + L+       A+  YLK      
Sbjct: 121 IELDIHLDDAPVDLIENGFDLGFRAASRPFDSGYVGKPLMDFSYSVCASAEYLKEQGPIT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++EL +HN   +     + +             G      L+VNS   ++     G GI
Sbjct: 181 TVEELSEHNCFIYSYFRGQDIWPLG--------EGVKVGGNLRVNSTPFMLDVVKNGLGI 232

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +PD+I  ++     +V ++++V  P  T+Y  YP       K+K   +F+
Sbjct: 233 GFIPDFIAGNSIREGQVVELLKNVARPRLTLYAMYPARRLAPPKIKLCISFL 284


>gi|146339421|ref|YP_001204469.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146192227|emb|CAL76232.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 321

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 132/296 (44%), Gaps = 9/296 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    +RVF  VA   SF  AA++L LS +  S+ +  LE  +  +L  R +R + L
Sbjct: 1   MIMDTLVSIRVFCQVAELKSFAAAADRLSLSPAMASKHVMQLEQRLSTRLLNRTSRRVGL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G         +  +L+  +  + +++V P G L+++  +     L  G L  +   +
Sbjct: 61  TEAGQVYFDQVRPMLDQLDEAEAVVSKATVIPRGTLKVSAPVWFANPLFAGMLAAYHARH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ + L L  + +++  +  D A+R+        LI R L  + M   A+P YL     
Sbjct: 121 PDVVLDLDLSGRLVNLVEEGFDLALRVSA-TPGDGLIARPLPPVLMQLVASPAYLAAAGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P ++ +LD H  + +     + +     +   D  +       L   +   + Q  V G 
Sbjct: 180 PATLADLDGHGFLKYAHYPVRTI----MVPHADGEVALGFRDVLISGNETLLHQAAVAGL 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+A+LP +++ D+     L  ++ +++T    +   YP     + K++ F +FI  
Sbjct: 236 GMAVLPRWLMADDLAAGRLEAVLPELLTIKAPLLAVYPSRKYLSAKVRTFIDFIAA 291


>gi|89054015|ref|YP_509466.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88863564|gb|ABD54441.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 302

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 121/295 (41%), Gaps = 4/295 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D +     V   GSF   A  L ++ S+IS+ +  LE  +G+ L  R  R + LT+ G
Sbjct: 5   DLDGILPLLAVVEHGSFRAGAAALGVTPSAISQSVKQLEERIGVPLLTRTTRSVGLTQAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  S    ++      + E   +PSG LRI+         L   L EF+  YP+I+
Sbjct: 65  QLFVDRASPAICEVRDALASISEFGQRPSGLLRISAPRLAYPVALAPVLPEFMKTYPEIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ L++   DI     D  IRL   +++  + +       M   A+P YL     P + 
Sbjct: 125 VEISLEDTLTDIVQSRFDAGIRLGATVEADMVARALTPPSRMCVVASPDYLDAHGVPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I F     K +  + +L         P    + VN   + +   + G G+A 
Sbjct: 185 DDLLSHRCINFRRPTRKTVYHWRFLER-GEDRHIPVPGVMIVNDTAAKIDAALNGFGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
               +V+ +     L+ ++E  +      +  YP   +   KL+ F +F   + R
Sbjct: 244 ELAPVVEQHVKAGRLISVLEGYLPEVPGFHIYYPGRKQIMLKLRVFIDFAAAELR 298


>gi|78066354|ref|YP_369123.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967099|gb|ABB08479.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 321

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 132/302 (43%), Gaps = 13/302 (4%)

Query: 1   MSFDWDKL-----RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L      +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R
Sbjct: 1   MQRQFDDLLLGSIELFCLAAELGSFTLAANAASVTPAAVSRSVARLEERLGVRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G +      +   +L   + E       P+G LRI+     G   +   L  F
Sbjct: 61  QIRLTDSGRRYFEQCRDALSQLVDAEREATGQQATPAGLLRISMPTPYGHYRVLPLLPAF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YPD++++  L N++ID + +  D AIR R P   S+L+ R L    +   A P YLK
Sbjct: 121 RERYPDVRVETHLSNRNIDFAEEGYDLAIRGRAP-ADSNLVARTLEDAELVIVATPGYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL--QVNSYLSIMQ 233
               P  I +L  H  I F   +P       WL +      +   +        YL+ + 
Sbjct: 180 RAGTPTVIDDLHAHECIQFE--LPSSGRQIPWLFSDGSEEIDVATTGSYGTSGDYLAGVT 237

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     +IV+ +     LV ++  +   S      YP A   + +++ F +F+
Sbjct: 238 LARSGAGLFQAYRFIVEQDLRAGTLVEVLPGLGGRSRPFMLLYPHARFLSSRVRVFVDFL 297

Query: 291 FL 292
             
Sbjct: 298 IE 299


>gi|317494465|ref|ZP_07952878.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917395|gb|EFV38741.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 297

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S ISR +  LE ++   L  R  R + LT
Sbjct: 1   MKTTTEELVAFVAVVDAGSLTGAAEQLGQTPSGISRALGRLEQKLETTLLNRTTRRIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E  + +L     +P+G+LRI        +++   + EF   +P
Sbjct: 61  EEGRIFLDRARAILEAIEEAEEQLALQRHRPAGRLRINAASPFMLHVVVPLIDEFTARFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L   ++ ID+     D AIR+   +Q SSL  R +    +   A+P YL+    P
Sbjct: 121 EIVLELNTSDQIIDLLEQRTDVAIRIG-TLQDSSLHARPIGRSRLKVLASPSYLQKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L  H L+ F    P+ +    W     +         +  +S  ++    + G G
Sbjct: 180 QQVTDLSGHRLLGFTQ--PQSLN--QWPLKQSQCASFAVTPDIAASSGETLRHLAISGRG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  L D++   +     LV I+ +    ++ +++  Y    + + +++ F +F+  +
Sbjct: 236 IVCLSDFMTHQDIAEGRLVPILTEHTLETYQSIHAVYYRNSQLSARIRCFLDFLAER 292


>gi|157370695|ref|YP_001478684.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157322459|gb|ABV41556.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 295

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 126/295 (42%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR  SFT AA QL ++Q ++S+ IS LE  + I+L  R  R ++ T
Sbjct: 1   MKRNLNDLLYFVTVARESSFTRAAAQLGVTQPALSQAISALEERMQIRLLTRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L         ++E     L E   KP+G++RI    D+  + L   L   L  YP
Sbjct: 61  SAGERLLLAIGNRIDEIEAELDMLTELRDKPAGRVRITCGPDVLHSTLLPKLSPLLREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCRE 179
           DI I+   ++   DI  D  D  +RL   I    +I   +   + M   AAP Y      
Sbjct: 121 DINIEFDANHGFRDIVADRFDAGVRLGDTI-DKDMIAVPIGPKLRMAVVAAPDYFSRYPI 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P +  EL +H  I     + +    + W    D      R+S  L  N+ + I+   + G
Sbjct: 180 PNTPHELTQHLCI--NQRMVRSGGLYVWDFDQDGGDLNVRVSGQLIFNTSVHIVDAALAG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA LP+       ++  L+R++E    P    Y  YP   + +         +
Sbjct: 238 LGIAFLPEEEFGKHIEDGRLIRVLEPWCKPFPGYYLYYPSRKQPSPAFSLVVEAL 292


>gi|86360420|ref|YP_472308.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284522|gb|ABC93581.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 299

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 128/287 (44%), Gaps = 6/287 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           V   V  SGSF  AA  L L+ S +SR ++ LE+ +G++L  R  R L LT+ G++ +  
Sbjct: 12  VLAAVVESGSFARAAVALGLTASGVSRAVARLESRIGVRLLERTTRSLRLTDDGTRFYEQ 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   +E        ++    G+LRI       + +L  NL  FL  YPD+QI+++  
Sbjct: 72  VVPLLGGIEEAAAYAAGTTQTVRGRLRINVDPYFSRLILGPNLGTFLDRYPDLQIEVVTR 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+  D+  D  D A+R  +    +SLI R+L    +   AAP YL     P    +L  H
Sbjct: 132 NEIGDLVADGMDVAVRFGEIPAKNSLIARQLFRTRVITVAAPSYLARHGTPKLPVDLTDH 191

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             I + D  P     F W     + +        + VN   + +  C+ G GIA +    
Sbjct: 192 TCIQYQD--PLTGRAFEWELRRGKKVVPIETRGRVLVNDAGTALATCLAGIGIAQVFSLG 249

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +K   D+  LV +  D    +F ++  Y        K++AF +F   
Sbjct: 250 MKPYIDSGQLVDLYPDWPDETFPLHCFYTSRHHVPAKVRAFIDFCVE 296


>gi|330953396|gb|EGH53656.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 305

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTILIKQLEAHLGVQLLQRTTRQVSATP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL+    P 
Sbjct: 121 IRLEIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLEQYGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL +H +I +            ++A     +       + VNS    +  C  G G+
Sbjct: 180 NLNELAQHQVIEYFSTSTGKRYGLEFMAD-GMDVEHASACSIAVNSADGYVAACEAGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V     +  LV ++     P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVAAQLRSGVLVEVLRLHRPPPPPLTALYPPHRQLSRRVRVFVDWLVE 292


>gi|194737184|ref|YP_002116544.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197300687|ref|ZP_02660264.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194712686|gb|ACF91907.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291385|gb|EDY30737.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 300

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 7   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++ 
Sbjct: 67  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEF 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  + M   A+P YL     P ++ +L
Sbjct: 127 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRMVNCASPQYLARFGYPENLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 186 ASHAVVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         V   YP     + ++  F  ++    ++
Sbjct: 245 IAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKE 297


>gi|86751608|ref|YP_488104.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86574636|gb|ABD09193.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 308

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 146/301 (48%), Gaps = 10/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D LR F      GSF+ AA++L L Q ++S++I+ LE E G +LF R+ R LT T 
Sbjct: 1   MDRLDCLRAFVKTMEGGSFSGAAKELGLGQPAVSKRIALLEKEFGSQLFMRNTRKLTPTR 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +  +++ +  +    +E  +  + E+   P+G LR+      G++ +   ++++L  YP 
Sbjct: 61  EAHRIYDLARQALSCIEMARASIAEAPAVPTGMLRLGVPSSFGRHYIMPVIEQYLRDYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +    + +++  D  + A+R+   ++SSSL  R++  +     A P YL+   +P 
Sbjct: 121 VKVDIRFSEQTVNLVEDGIELALRIGD-LESSSLKARRIGLVRRFLVATPAYLRRQPQPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L   + I +  L P     F+  + + R + +   S + V+   ++ Q  +   G+
Sbjct: 180 LPGDLKNLHCIAYARLSPANQWAFD--SELGRHVVQISASIM-VDDADAMKQAVLQNLGV 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A+LP +   D   +  +  ++ +   P+  +   Y +    + + + F + +   AR  +
Sbjct: 237 AILPAWSAADAVRSGEMEIVLPEFAVPALPLNAVYADTQWMSLRARCFLDLLI--ARSHR 294

Query: 299 F 299
           F
Sbjct: 295 F 295


>gi|261494574|ref|ZP_05991056.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261309765|gb|EEY10986.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. OVINE]
          Length = 296

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 140/292 (47%), Gaps = 4/292 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + LR F +VA++ SFT AA Q+ +SQS++S  I G+E  + IKLF+R  R ++ T
Sbjct: 1   MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEERLQIKLFHRTTRSISTT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L++    ++ +++     L E      G LRI     + +++L     EF+  YP
Sbjct: 61  EAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEHVFRDVLADKFAEFVKRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L+ +++ +DI  +  D  IRL   +    +  R    + M A A+P+YL     P
Sbjct: 121 EVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRISPDVKMTAAASPNYLAQHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
            +  +L +H+ +         +  + +   + + I +      L  N+   +  Y   G 
Sbjct: 181 KTPFDLTEHHCLKHRLATLGGILAWEFRDPITKKIVKFQPQGNLTANNGFLLQHYAKQGL 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GI   P   ++   DN +LV I+ D        +  YP   +N+  LKA  +
Sbjct: 241 GILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLYYPNRRQNSPLLKALID 292


>gi|183597888|ref|ZP_02959381.1| hypothetical protein PROSTU_01223 [Providencia stuartii ATCC 25827]
 gi|188022649|gb|EDU60689.1| hypothetical protein PROSTU_01223 [Providencia stuartii ATCC 25827]
          Length = 297

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++  F  V  SGSFT AA+ L +S+S +S  I  LE  + + L  R+ R + LT
Sbjct: 1   MQKNLKQITTFLQVVDSGSFTKAADILGMSRSMVSIDIKQLEIRLNVSLLIRNTRNIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  ++E      Q  +   +G LR ++T + GQ  +   L EF  LYP
Sbjct: 61  EAGKHFYDDFKRIQLEIEEAFERSQNLATNVTGLLRFSSTNEFGQRYILPLLPEFCRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q   ++   D+  +  D AIRL   ++SSSL  RK+    ++  A P  LK+    
Sbjct: 121 KLRLQYSFNSSLDDLVTEKLDLAIRLGN-LKSSSLKIRKIGEYQIYIVATPELLKHYPV- 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
             I +L +   IT   L+      +    T+      P I S  + NS   I Q  +   
Sbjct: 179 KGINDLAQIPWITHS-LLNWQDTQYILKNTLGEKYPLPIIKSQYESNSVAVIHQMVLASL 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+A+ PD++V D+     L+R++ +   PS  +   YP +     K + F +++  K
Sbjct: 238 GVAICPDWLVNDDINAGRLIRLLPEFYLPSQNIQLLYPNSTTLPAKTRVFIDYLVEK 294


>gi|187924372|ref|YP_001896014.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715566|gb|ACD16790.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 304

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 128/286 (44%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF+ AA +L L Q ++S+ ++ LE  +G +L  R  RGL  T  G + +
Sbjct: 7   METFVTVVDAGSFSAAARRLKLGQPAVSKAVAQLEERLGARLLLRSTRGLAPTAAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  H+ +  +  ++ESS   SG+LR+   +   +  +   LK FL  +P++ I ++
Sbjct: 67  EHALRAIHEADQAEQAVRESSDGLSGQLRVGAAVTFARLHVLPALKPFLDQHPNLSIDIV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  +  D A+R+   +  SS+  R++          P Y      P +  +L 
Sbjct: 127 LDDRSVDLLEEGVDVALRMG-TLDDSSMTARRIANGRRLVVGTPSYFAEAGLPQTPLDLS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + +   +    E + +               + VN+   +    +   G+A+  ++
Sbjct: 186 RHQAVVYS--LRGGGESWLFSRDDGSDSTVTLSGRISVNAAEGMRTAVLAHMGLAVASEW 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +      N  +  ++ D   P+  V+  +P     T K +AF  F+
Sbjct: 244 MFAPELANGTVQAVLTDWSLPTIDVWAVFPAGRMATTKARAFVAFV 289


>gi|94309144|ref|YP_582354.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93352996|gb|ABF07085.1| putative DNA-binding transcriptional regulator [Cupriavidus
           metallidurans CH34]
          Length = 308

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 134/296 (45%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L  F ++ + GS   AA+QL ++ S+ S++++ LE  +G++L  R  R L++T 
Sbjct: 1   MDAFSDLAFFVLLVKRGSLAGAAQQLGVTPSATSKRLAALEARLGVRLLNRTTRRLSVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G         +  +L+  +  L+ S V P G LR+  T+  G+  L   + +FL+  PD
Sbjct: 61  EGEAYLAQGGRILAELDELEQGLRGSRVAPRGLLRVNGTLGFGRRHLAPAIGDFLVACPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++QL L ++ ++++ +  D  I +   +  + L  R+L        A+P YL    EP 
Sbjct: 121 IEVQLQLTDRALNLAEEGYDVGILVGD-LPDARLNARRLALNSRLLCASPAYLARHGEPA 179

Query: 182 SIQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           S + L +H  I   +              +  R            N     + + + G G
Sbjct: 180 SPRALTQHRCIVIRESEAAYGTWHLQHQQSAARQETVKVRGMAATNDGEVAVNWALQGHG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I L  ++ V     +  L +++ +    +  ++  Y    K + +++AF +F+  +
Sbjct: 240 IVLRSEWEVAPLLRSGRLRQVLPEWSAQAADIHAVYLSRDKLSARVRAFVDFLAER 295


>gi|323499612|ref|ZP_08104581.1| transcriptional Regulator [Vibrio sinaloensis DSM 21326]
 gi|323315352|gb|EGA68394.1| transcriptional Regulator [Vibrio sinaloensis DSM 21326]
          Length = 294

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 132/301 (43%), Gaps = 13/301 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +  F  VA S  F+ AA+ L  S S +SRQ+S LE  VG+ L  R  R ++LTE
Sbjct: 1   MDSFEGINEFVAVAESQGFSAAAKLLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R   ++   L+    +L    ++ +G LR++      +N +   L  F   YP+
Sbjct: 61  AGHIYYRQCKDLVTGLQQANEQLSSQQIELNGILRVSAAGAFAENHVAPALMLFAQQYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  +++ ++   D  D AIR  + +  S L+ RKLV   M A A+  YL     P 
Sbjct: 121 LTIEMDFNSRMVNFIEDGVDFAIRYGR-LTDSGLVARKLVDRPMAAAASQEYLDQYGCPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             ++L +H+ I           D        +P+   R+    + N+  +++Q C  G G
Sbjct: 180 HPEQLKQHSCII-------ANNDHWLFEEQGKPLNALRVHGRWRSNNSTAVIQACEQGLG 232

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  LP        +   L  ++E       + +  Y        + +   +F+     +W
Sbjct: 233 IVYLPKSSFNGALEQGRLQPVLEPFWGRGTSSWIVYQNRRFLPLRARMAIDFLVNHFANW 292

Query: 298 K 298
           +
Sbjct: 293 Q 293


>gi|209695089|ref|YP_002263018.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
 gi|208009041|emb|CAQ79271.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
          Length = 303

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++ VF  + +  SFT AA+ L +S++ +S+QI  LE  +G++L  R  R  +LTE G  
Sbjct: 6   KQMIVFNALHQQQSFTKAAQLLEISRTQVSKQIQLLEERLGVQLVQRTTRSFSLTEAGQS 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +  ++   + EL  +     GKLR+        N +   L E    YP + ++
Sbjct: 66  FAVHCANIADEINEAENELLSNVDNLQGKLRVGIAQSFATNHILPYLSELHQRYPLLNVE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  ID+  +  D  I +         + R L+  H    A+P YL     P    +
Sbjct: 126 ITLFDHKIDVIAEQLDLWIGVMDS-PPEGFVARHLIDCHFVLVASPSYLSIQGIPYHPYD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L KHN +T+   + +  +D  W    D    + ++S   +++S  +I    + GSGI  +
Sbjct: 185 LKKHNCLTY---VSRERKDNVWGFHKDNDNLQIKVSGNYRIDSADAIRNATIAGSGIGYV 241

Query: 245 PDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y++ D      L++++ D     S  +Y  YP       K+  F  F+
Sbjct: 242 ATYLLSDELRTGKLIQLLPDWELNQSMPLYAVYPRRKFLPKKVHVFMEFV 291


>gi|145298143|ref|YP_001140984.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850915|gb|ABO89236.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 299

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LRVF  V   GS + A E+L +S++ ++R ++ LE  +G +L +R  R L+LT 
Sbjct: 1   MDRLTALRVFVSVVEQGSLSGAGEKLEMSRAMVTRYLAELEQWMGARLLHRTTRRLSLTG 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +    E  +         P G+LRI ++  L + LL G   ++L  Y  
Sbjct: 61  PGEEALNRARAMLALGEEMEQIAIRGDEAPKGQLRITSSYSLSEALLVGAANDYLAQYAG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             I ++L ++ +++  +  D AIR+   +   +L+ R+L T H    A+P YL     P 
Sbjct: 121 TAIDILLLDRTVNLVEERIDLAIRITNDL-DPNLVARRLGTCHSVVCASPAYLARHPTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +Q+L  HN +T+        E          P   P    L  N    +++  + G+GI
Sbjct: 180 KVQDLALHNCLTYTYFGKSLWE----FQGPAGPESVPVSGNLSANISNLLLEATLGGAGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ P Y  +   ++  LV ++         VY  Y    + +  L++F +F+ ++
Sbjct: 236 SMQPRYSAQPHLESGALVPLLSQWQPKRLGVYGVYGTRKQMSPLLRSFLDFLVVR 290


>gi|152983805|ref|YP_001349982.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150958963|gb|ABR80988.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 314

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 135/295 (45%), Gaps = 5/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   ++ +R F  VA +GSFT AA++L L+ + +SR ++ LE  +  +L +R  R + LT
Sbjct: 1   MDILFN-MRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLRTRLLHRTTRRIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   +E  + E  ++  +PSG L++     +GQ+ L   + ++   YP
Sbjct: 60  EAGQRYLMRAQQILAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++   L L N+  DI  +  D ++ +   +  S  + + +   +    A+P Y+     P
Sbjct: 120 EVGFDLTLANRITDILDEGYDISVVIAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  +   + +   ++ + +     + +     +  QVN+  ++ +  V G G
Sbjct: 180 RLPAELSAHRCLRLVNSVM-SLDRWLFDGPDGQELACINQTHFQVNTADAMTEAVVSGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP Y   +   + +LVR++         VY  YP       K++ +  F+  
Sbjct: 239 IGALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWVEFLRE 293


>gi|91782799|ref|YP_558005.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686753|gb|ABE29953.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 336

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 128/298 (42%), Gaps = 13/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V  +G+F+ AA QL  + S++SRQI  LE  +  +L  R  R + +TE G+++
Sbjct: 39  DMAVFARVVDAGNFSVAARQLGSTPSTVSRQIKRLEDALATRLLERSTRTVRVTESGAQV 98

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++            + + KP GK+ ++      ++++   +  FL  Y ++ +QL
Sbjct: 99  ARFCRDMVSAASGAVDAAGQLAGKPQGKVSVSAPTQFAKSVIHPLIPGFLRAYGEVDLQL 158

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  ++D+D   D  D  IRL +      L  R+L  +     A+P YL+    P   ++L
Sbjct: 159 LFTDRDVDPLADGIDLVIRLTEH-PPQGLAGRRLGAVRWLLVASPAYLRERGTPAQPRDL 217

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            KH  I  G+      +D  W            +      N   + ++  +   GIA +P
Sbjct: 218 LKHACIYLGETA----DDNRWRFRRGTETQSVDVKGRYIANHAGARLEAALQDFGIACVP 273

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++   +      LV+++ D    +       +  YP       K++A  +++     D
Sbjct: 274 EFAAAEWLPGGELVQVLPDWNLEARAYVGSVWLLYPPNRFLPPKVRALIDYLVEHLHD 331


>gi|330879631|gb|EGH13780.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 297

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +  TE G 
Sbjct: 6   LNDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +L+  L  FL  YPDIQI
Sbjct: 66  QLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    AP Y +    PL  Q
Sbjct: 126 EVCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFEKHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I            + W    D R +          NS + ++   + G G+A 
Sbjct: 186 DLTQHTCINIRHSPNGSC--YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  + +   ++  L  ++ D        +  YP   + +    AF  
Sbjct: 244 VPISLARQHIESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAFVE 291


>gi|304412332|ref|ZP_07393940.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307306116|ref|ZP_07585861.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304349367|gb|EFM13777.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306910989|gb|EFN41416.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 337

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 140/288 (48%), Gaps = 10/288 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    + VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTL
Sbjct: 1   MNKNMIKGMIVFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE GS  +    +V   +E+T+ +L      PSG+L+IA  I  G  LL       L  +
Sbjct: 61  TEAGSLFYENCRKVIAIVESTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + L+L +  IDI  +  D AI +  P+  S+LI R L    M   A+P YL   + 
Sbjct: 121 PQISLNLLLQDGPIDIVNEGIDLAICIG-PLSDSNLIARHLADWRMLLCASPDYLPMHKI 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                EL   N I       + +          +   E     + VN+  +++Q  + G 
Sbjct: 180 FKHPAELAAFNRINHPCANSETLTHAR-----SQECFELTSQRITVNNMQALIQLTLDGL 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G A LP+  V    ++  LV ++ +    +++VY       K   K+K
Sbjct: 235 GFAALPEPEVHKYLESGQLVPLLPEWSLNTYSVYSVTSARDKQPAKVK 282


>gi|218708908|ref|YP_002416529.1| LysR family transcriptional regulator [Vibrio splendidus LGP32]
 gi|218321927|emb|CAV17921.1| transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 295

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 85/297 (28%), Positives = 145/297 (48%), Gaps = 11/297 (3%)

Query: 1   MS--FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           MS     D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+
Sbjct: 1   MSGFMKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLS 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LTE G +     S +  +L +T  EL +     SGK+RI    +L + ++     EF+  
Sbjct: 61  LTEAGERFFNECSPLLQRLSSTAEELTDVCKGASGKIRITAPSNLTKRMMMPMFSEFMTQ 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YPDI I+L+++N+   +     D   R+  P + SSLI RK+  +     A+P YL    
Sbjct: 121 YPDINIELMMNNQADQLDPTEWDVIFRVG-PQRDSSLIARKISEVKDILIASPDYLAKNP 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P   +EL  H+L+    LI   + + N    V+   G         N+   + Q C  G
Sbjct: 180 APSHAEELANHSLLKGYPLIKWQLSNSNEETVVNSEKG-----RFNANALNVVRQACSEG 234

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI L+PD +++   ++ +LV+++ED       +Y  Y        K++ F +F+  
Sbjct: 235 LGITLMPDVMIREYIEDGSLVQVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 291


>gi|217971427|ref|YP_002356178.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217496562|gb|ACK44755.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 337

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 140/288 (48%), Gaps = 10/288 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    + VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTL
Sbjct: 1   MNKNMIKGMIVFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE GS  +    +V   +E+T+ +L      PSG+L+IA  I  G  LL       L  +
Sbjct: 61  TEAGSLFYENCRKVIAIVESTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + L+L +  IDI  +  D AI +  P+  S+LI R L    M   A+P YL   + 
Sbjct: 121 PQISLNLLLQDGPIDIVNEGIDLAICIG-PLSDSNLIARHLADWRMLLCASPDYLPMHKI 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                EL   N I       + +          +   E     + VN+  +++Q  + G 
Sbjct: 180 FKHPAELAAFNRINHPCANSETLTHAR-----SQECFELTSQRITVNNMQALIQLTLDGL 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G A LP+  V    ++  LV ++ +    +++VY       K   K+K
Sbjct: 235 GFAALPEPEVHKYLESGQLVPLLPEWSLNTYSVYSVTSARDKQPAKVK 282


>gi|307546330|ref|YP_003898809.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218354|emb|CBV43624.1| transcriptional regulator [Halomonas elongata DSM 2581]
          Length = 324

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +   +F  V   GSFT A+  L + ++++SR+I  LE  +G +L  R  R L+LT
Sbjct: 2   MQQDLNDALIFARVVEQGSFTAASRLLSIPKTTVSRKIQALELRLGARLLNRTTRRLSLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  +L   +  +Q     P G LR+     +  +     +++F  LYP
Sbjct: 62  EAGGVYYDYCHRIVEELGEAESAVQRLEGNPRGWLRVTAPFTMCTDFTSALMRDFRTLYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L+L N+ +D+     D A+R+  P+  SSL+ R L       YA+  Y+    EP
Sbjct: 122 EVKIDLVLSNERLDLVAQQIDVALRIG-PLPDSSLVARPLARYRSFIYASSRYIARHGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGS 239
               +L  H   T      +  + F W         E  +  + V N    +    + GS
Sbjct: 181 REPADLAYHP--TLARSTDQRGQRFFWQLHKGIQQQEIELDPVAVANDPFVLRGLLLDGS 238

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ L  + +     +   L RI+ +   P       +P     + K++ F +F+  +
Sbjct: 239 GLMLASEAVACLGPEEHQLRRILPEWEGPEVEFNAVFPGGRLISPKVRTFVDFVVER 295


>gi|325526806|gb|EGD04305.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 288

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 130/290 (44%), Gaps = 5/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +  SGSFT AA+QL + ++S ++ +  LE  +G +L  R  R ++ T  G+  +
Sbjct: 1   MRLFTCIVDSGSFTRAAQQLGMQRASATQIMKQLEAHLGARLLVRTTRHVSPTLDGAAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   ++  +     ++  P G L++       + ++   L +F   YP + + + 
Sbjct: 61  QRCVDILDGIDEAEASFSHAARHPQGALKVDLASSFARLVVIPALPDFFARYPQVTLDIS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D++ +  DC +R+ + +  SSL+ R++  +     A+P YL     P ++  L 
Sbjct: 121 IGDRRVDLARESVDCVVRIGE-LTDSSLVARRVGMLEQVTCASPGYLARYGRPRNLAALA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KH  + +              +   R       + + VN+  + +  C  G GI  +P Y
Sbjct: 180 KHREVAYVSASSGKRVPLV-FSVDGRVETRELPASVSVNNGDAYVAACEAGLGIVQVPRY 238

Query: 248 IV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V        L  I+  V  P   +   YP     + +L+ F +++   A
Sbjct: 239 HVVGQLQRGTLTEILTRVRPPPLPLSVLYPHRGHLSPRLRVFIDWVAELA 288


>gi|194366842|ref|YP_002029452.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349646|gb|ACF52769.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 304

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 133/296 (44%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + ++V+ ++   GS + AA  + +S +   + +  LE  +G++L  R  R   +T
Sbjct: 1   MNL-LESMQVYVLIVDRGSLSAAATAMDISATMAGKHLRALEARLGMQLLSRTTRRQHMT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +    E+   ++ T  + Q   + P+G LRI+  +  G + L   L E++  YP
Sbjct: 60  PFGEDYYARCKEILRLVDETDAQAQHQQLAPAGTLRISAPVIFGTHALVPALAEYMARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++++  L ++ +D++ +  + A+R+     SS L+ R L    +   A+P YL     P
Sbjct: 120 DVRVEATLTDRVVDLTEEGFEAALRIGTLAGSSELVARALTPYRLMMCASPAYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++  L  H  ++F     +      WL      +       LQ+N+  ++    + G G
Sbjct: 180 DTLPALASHQCLSF-----EPSALAQWLQAGAGELDRTPDGRLQINNGEALRSAALHGLG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I L    ++    D   LV++  +       ++  Y      + +L++F +F+  +
Sbjct: 235 IVLQSTLLLAADVDAGRLVQLFPEHGQAGRPMHVVYAHDRYRSTRLRSFLDFLVER 290


>gi|157371302|ref|YP_001479291.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323066|gb|ABV42163.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 300

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 137/286 (47%), Gaps = 5/286 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LRVF  VA  GSF  A++ L + ++++S  I  LE E+G +LF+R  R + LT  G  L
Sbjct: 6   RLRVFIQVAEVGSFIRASQILLMPKTTVSAAIQQLEHEMGTRLFHRTTRRVQLTSDGELL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   ++  +      +    G+L +     + + ++   L +F L YP+IQ+ L
Sbjct: 66  LEKARSLLFDVQALESLFHRQNGPIGGRLTVDVPSRIARRMIVPALPDFFLQYPEIQLFL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R+   +  SSL+ + L  + M   A+P YL+    P    +L
Sbjct: 126 SASDRSVDLIQEGIDCVVRVGN-LSDSSLVSQPLGRLSMINCASPDYLQRYGTPEHPDQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + H ++ +        + + W     +   +   + + VN+  + +  C++G G+  +P 
Sbjct: 185 EDHWVVGYAQPTLAGADSWQW-QQDGQHFEKTLPNRVTVNNVENYIGCCLVGLGMMQIPR 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + V+   DN +L  I+     P+ ++   YP   + + +L AF  +
Sbjct: 244 FDVQHYLDNGSLCEILPQARPPAMSMALLYPHRRQRSARLTAFSEW 289


>gi|49085008|gb|AAT51245.1| PA3895 [synthetic construct]
          Length = 318

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 136/298 (45%), Gaps = 13/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +GSFT A++QL+ + + +SR ++ LET +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+GKL++ +   +GQ+ +   +  +   Y D
Sbjct: 61  AGQRYLLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + N+  D+  +  D AI +   +  S  I +++   +    A+P YL+    P 
Sbjct: 121 VTFDLTMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPS 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVL 237
              EL  H+ +    L+   +    WL   D P G+  +S      QVN   ++ +    
Sbjct: 181 EPSELASHDCL---RLVSPVVPLDRWLF--DGPNGQEMVSIGASPFQVNVGDAMTEAIRS 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI +LP Y   ++     LVR++         VY  YP       K+K +  ++  
Sbjct: 236 GLGIGILPVYSAIEDLGKGTLVRVLPQHRLQQLNVYALYPSRQYLDAKIKTWVEYLKE 293


>gi|330820400|ref|YP_004349262.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327372395|gb|AEA63750.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 305

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 123/296 (41%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L  F  +A   SF  AA  L +S S++S  +  LE  +G++LF R  R + LTE G 
Sbjct: 6   LSELTAFVAIAEQRSFRAAARALAVSPSALSHSMRSLEARLGVRLFNRTTRSVALTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L R        LE    E+  +  +P+G +RI  +    + L++  L EFL  YPDI +
Sbjct: 66  HLLRRVGPALSDLENAVDEVATAQNRPTGSVRINASETSTRILIRDVLPEFLQRYPDIHV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + + + + IDI  D  D  IR+   +    +  R    +   A A+P YL     P    
Sbjct: 126 EFVTETRLIDIVADGFDAGIRVFDDVPRDMIAVRFGPDMRFVAVASPDYLARHPAPTRPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I +               +  +         + + +  S+++  + G G+A  
Sbjct: 186 DLMQHRCIRYRFESGAMFRWD--FQSNGKTSSLDVEGPMTLGNLNSMIEAALAGIGVAWA 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P+ +V ++     LV ++ D       +   YP        L+ F        RDW
Sbjct: 244 PESLVSEHLASGRLVALLRDWSVSLPGLALYYPANRHPPAPLRLFVQ----AVRDW 295


>gi|262372497|ref|ZP_06065776.1| LysR family transcriptional regulator [Acinetobacter junii SH205]
 gi|262312522|gb|EEY93607.1| LysR family transcriptional regulator [Acinetobacter junii SH205]
          Length = 307

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 139/298 (46%), Gaps = 6/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE ++G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEYGGFSAAERATEIPKSKLSRRVYNLEEQLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S +P G ++++  +D+ QN +   L  FL  YP
Sbjct: 61  DIGMDVYRHAQVMMNAAQAAHDVVNHLSSEPRGVIKVSVPVDIAQNQMAKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++++Q+++ N+ +D+  +  D A+R+R  +    +L+ R+   I    +A+  YL     
Sbjct: 121 EVRVQMMVSNRRVDVINEGIDLALRVRSKLDDDPNLVLREFEAIEQRLFASQAYLNEFGH 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + +EL KH +I+  +      + F      ++         +  ++ L + Q      
Sbjct: 181 LNTPEELSKHRIISMSE--DHLDQQFLLSGPNNQQQKIKVNPVIMASNLLMLAQLASQNC 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIALLPD I +D   +  LV+++ +   P    +  YP        ++ F +++  + 
Sbjct: 239 GIALLPDSIAQDFVKSGQLVKVLPEWTAPHGIFHAVYPSRRGLLPAVRVFIDYLVEQL 296


>gi|221211013|ref|ZP_03583992.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168374|gb|EEE00842.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 320

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ +++ 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAERFPDVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YLK    P ++ +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHILLVASPEYLKKHGTPETLADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +             N  A   R         L VN    +    + G+GIALL  
Sbjct: 187 AQHNYLRRDSNASTLDAMLNDAAAASRVALN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIEAGRLVPVLVDAVPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|221198047|ref|ZP_03571093.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221204395|ref|ZP_03577412.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175252|gb|EEE07682.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181979|gb|EEE14380.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 313

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 125/299 (41%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 12  PLDLLDVGLFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 72  DGEIFMARAEALLSAADAARASVGRGRTEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPS 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  D AIRL   ++ S+L+ RKL T       +P YL     P 
Sbjct: 132 VSLDLRLSDEIVDLVDEGYDVAIRLGA-LKDSTLVARKLATNRRVLCCSPAYLAERGMPR 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L KH  +  GD            AT   P+       L  ++  +I +  V G GI
Sbjct: 191 HPADLAKHECVILGDQRDWS------FATPQGPLTVRVGGRLVASNGEAIREALVDGFGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     +  LV +++D        V+  YP       K  AF  F+     D
Sbjct: 245 AIKSTWDVGPLLASGALVTVLDDYPFAEDIAVWAVYPSRAHVPLKTLAFIAFLAEHFGD 303


>gi|219870473|ref|YP_002474848.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
           SH0165]
 gi|219690677|gb|ACL31900.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
           SH0165]
          Length = 296

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 132/291 (45%), Gaps = 11/291 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V  + SFT AA+Q  +S +  S+ ++ LE  + ++L  R  R ++ TE
Sbjct: 1   MDKLKAINLFCKVIETQSFTQAAQQEQISLAMASKLVAQLEEHLNVRLLQRTTRRISPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+  +  +   +    GKL ++  +D G   +  +L  F   YP 
Sbjct: 61  AGLLFYQRCQPILNELKDAEACVTNITSTLQGKLTMSLPMDFGSRFVAPHLHRFTETYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ +D+  +  D  +R+ K ++ SS++ +++        A+P YL+    P 
Sbjct: 121 LQLNLEFSDRRVDVVAEGYDLVLRIGK-LEDSSIVAKRIAQAQHLIVASPRYLEKFGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL +H  + +     + +  FN        I     S +  N+  +++Q    G GI
Sbjct: 180 TAWELQQHQCLRYES---QTLWQFN---ENGHKIKFKPQSQVYSNNGYALVQMARAGHGI 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +P +++KD   +  L+ I+  +      +   YP     + K+K    F
Sbjct: 234 INIPKFLLKDELASGELIPILPHLEQELSDISLLYPNRRYLSPKVKVTIEF 284


>gi|13476598|ref|NP_108168.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14027360|dbj|BAB53629.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 300

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 138/296 (46%), Gaps = 7/296 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD      + V   +A  GSF  AA+ L LS+S +SR +S LE  VG++L  R  R +
Sbjct: 1   MAFDGRVISNVGVLAAIAEGGSFARAADALGLSRSGVSRAVSRLEARVGVRLLDRTTRAV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT++G +L+   + +   +E        +SV   G+LR+       + L   ++ EFL 
Sbjct: 61  SLTDEGRRLYAEVAPLLTGIEDAVTVTSGTSVAVRGRLRVNVDAFFSRQLFTPHISEFLS 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYPD+ ++L+  ++  D+  +  D AIR   P   SSL+ +KLV       AAP YL   
Sbjct: 121 LYPDLSLELVARDQLGDLVAEGFDIAIRFGTP-PVSSLVVKKLVETRTVTVAAPAYLTAH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P    +L +H  I   D +     +          +       L V  + +++  C+ 
Sbjct: 180 GTPTIPADLVEHACIQVRDSLTGQPIEEWRFRRGAEVVDVRTTGRLMVTEFGTMLGACLD 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIA +    V+       LV ++ D    SF +Y  YP       K++AF +F+
Sbjct: 240 GVGIARIKAIGVQHLIQQGALVEVLPDWRGESFPLYALYPSRHLPPAKVRAFIDFV 295


>gi|300704767|ref|YP_003746370.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299072431|emb|CBJ43776.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 290

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 129/293 (44%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V ++  F  AAE + +  S++SR+I  LE  +G++L +R  R + LTE G 
Sbjct: 4   LNDMALFVEVVKAKGFRSAAEAMGIPNSTLSRRIGALEKAIGLRLLHRTTRKIELTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +      +L E   +PSG LR +  +D     L   + EF  LYP I  
Sbjct: 64  LYFERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFAGLYPGITF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L  + +D+  +  D AIR+  P + S LI R L ++  H YA+P YL    EP    
Sbjct: 124 DFDLTPRRVDLVSEPFDVAIRMG-PSEDSQLIARPLASLTPHLYASPGYLDRSGEPRKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H  ++        ++D    ATV             +NS   I +  VL  GI L+
Sbjct: 183 DLERHECLSILKAGSWTLQDGKRTATVSVG------GRFTLNSVGMIRRLAVLDLGIVLM 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P+ IV D   +  L RI+         VY    E      K + F  F+  + 
Sbjct: 237 PEEIVADELASGKLRRILPGWHGTPMPVYAIT-ETRLLPAKTQRFIEFLRARL 288


>gi|213426510|ref|ZP_03359260.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213612647|ref|ZP_03370473.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213850452|ref|ZP_03381350.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289824321|ref|ZP_06543914.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 299

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 6   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 66  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYPGIALEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 126 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 185 ASHAMVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         V   YP     + ++  F  ++    ++
Sbjct: 244 IAVREALRAGALIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKE 296


>gi|146343004|ref|YP_001208052.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146195810|emb|CAL79837.1| Putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 304

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 136/298 (45%), Gaps = 10/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   +R+F  V R GSF   A Q  +  S++SR ++ LE ++G +L  R  R LT TE 
Sbjct: 1   MDLQAIRIFVEVLRLGSFAAVARQHAVDPSTVSRTVAVLEEQLGFRLLQRSTRRLTATEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  +L+  + E ++    PSG+LR+  ++  G  ++   L     L+P +
Sbjct: 61  GVRYFERVQPLLDELDRAESEARDIVAAPSGRLRVTASVAFGATVVVPRLARLRALHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+L ++ +D+  +  D AIRL   +  + L+  +L+    H  A+P Y+    +P  
Sbjct: 121 DIELMLSDQIVDVVAERIDIAIRLGARL-DTGLVGTRLMQTRYHVCASPDYIARNGKPAR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L+ H+ + F          + + +        P    + +++ L++ +  + G G  
Sbjct: 180 PERLEDHDCLLFP--YQGFRTQWRFRSRGGAVTEVPVKGGIVISNALALHRAALEGLGPV 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFLK 293
           LL D++V  +     LV +       +       +  YP       K++AF +F+  +
Sbjct: 238 LLADWLVGADLKHGRLVNLFPGYEVTATAFSTAAWILYPSRSYVPLKVRAFIDFMKAE 295


>gi|262164549|ref|ZP_06032287.1| transcriptional regulator [Vibrio mimicus VM223]
 gi|262026929|gb|EEY45596.1| transcriptional regulator [Vibrio mimicus VM223]
          Length = 300

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVTRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+    
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENL 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L   +  +D+  +  D A R+ K ++ +S I RKL  + M   A P YLK C +P
Sbjct: 125 EVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFIARKLTEVAMSTLATPAYLKQCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLAEHRCLT-GSVKRWSYQHNTTQQTID----VPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +  ++      LV +  D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCQEEIARGELVEVFPDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|209519868|ref|ZP_03268651.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499686|gb|EDZ99758.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 304

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 139/291 (47%), Gaps = 9/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F  A+E + +S   +SR I+ LE  + I+LF R  R ++LTE+G + +
Sbjct: 12  ISVFAAVVDAGTFAAASEVIGMSPPGVSRAIARLEKRLKIRLFNRTTRSVSLTEEGRRFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE   +     +    GKLR+       + +L   L +F+  +PD++I+ +
Sbjct: 72  EQVMPHLAGLEEAAVAAAGGASAVRGKLRVNLDPVCYRAILGPQLDQFIDAHPDLEIEFM 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+ ++  D A+R  +P ++S+LI RKL+   +   AAP Y+     P   ++L+
Sbjct: 132 ARDHLGDLVLEGFDLALRFGEP-RTSTLIARKLLDTAVVTVAAPSYVARRGRPAKPEDLE 190

Query: 188 K--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL- 244
              H  + F +        + +     R +  PR   L VN   +++  C+ GSGIA + 
Sbjct: 191 GPSHRCLEFRNPETGKPFPWEFHRKRKRMVIAPR-GRLTVNDPGALLNACLAGSGIAQML 249

Query: 245 ---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               ++++ +   L+ +  D     + +Y CYP       K +AF +F+  
Sbjct: 250 LLGAEHLIAE-GRLINLFPDWPDERYPLYACYPSRHHMPAKTRAFMDFVVE 299


>gi|62178948|ref|YP_215365.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161615496|ref|YP_001589461.1| hypothetical protein SPAB_03267 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168240136|ref|ZP_02665068.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261251|ref|ZP_02683224.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194448484|ref|YP_002044363.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|224582172|ref|YP_002635970.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|62126581|gb|AAX64284.1| putative transcriptional regulator, LysR family [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364860|gb|ABX68628.1| hypothetical protein SPAB_03267 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406788|gb|ACF67007.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205340316|gb|EDZ27080.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205350095|gb|EDZ36726.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224466699|gb|ACN44529.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322713403|gb|EFZ04974.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 321

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALCGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I     I R+L T      A+P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDIN-ELYIARQLATNRRILCASPEYLERHGKPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   K     NW+ T  +     R++     NS   ++ + + G GI L 
Sbjct: 200 LVQHDCLMIQE---KNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITLR 256

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    +   LVR++      +  ++  Y     ++ ++K   +F+  
Sbjct: 257 SEWDVAQYIERGELVRVLPQWYQEA-NIWAVYTRRSSSSDRIKICIDFLTE 306


>gi|16762695|ref|NP_458312.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144182|ref|NP_807524.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213584054|ref|ZP_03365880.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|25319792|pir||AF0986 hypothetical lysR-family transcription regulator STY4196 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16505001|emb|CAD08018.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139819|gb|AAO71384.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 300

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 7   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 67  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYPGIALEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 127 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 186 ASHAMVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         V   YP     + ++  F  ++    ++
Sbjct: 245 IAVREALRAGALIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKE 297


>gi|158423033|ref|YP_001524325.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158329922|dbj|BAF87407.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 304

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 136/294 (46%), Gaps = 9/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ VF   A   S + AAE L +S +++SR +S LE  +  +L  R+ R L LTE
Sbjct: 1   MDRLAQIEVFLKTAELRSLSRAAEALGMSNAAVSRHLSALEERLSARLVERNTRRLWLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + ++ +  +  +L   +  + E ++ P G LR+ +++      L   L E   LYP 
Sbjct: 61  AGQEFYQRSGALLAELAEAEEAVNEHTLSPQGLLRVTSSLSFATIYLAPMLPELRRLYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + + N+ +D      D AIR R     ++++ R+L  +     A+P YL+    P 
Sbjct: 121 LSVHIAVANRYLDFIEAGIDVAIRTRLHEPDTNIVVRRLGRMRRVLAASPAYLEERGRPK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L +H+++ +        + F+   +        RI + L  N    I Q  + G G
Sbjct: 181 EPADLARHDMLVYN----LAQDPFSLRLSKGEAERTVRITAALDCNDGQVIRQAAIAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           I + P YIV+++     LV ++ D   P  T+   Y    +   K++ F +F+ 
Sbjct: 237 ILVQPLYIVQEDLEAGRLVPVLLDWQLPMLTMNIAYQNRERLPAKIRVFTDFLV 290


>gi|307543958|ref|YP_003896437.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307215982|emb|CBV41252.1| putative transcriptional regulator [Halomonas elongata DSM 2581]
          Length = 302

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 137/297 (46%), Gaps = 10/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V  +GSF+ A  QL  + S++SR ++ LE  +G +L  R  R L L++ G 
Sbjct: 10  LSEMAVFVKVVEAGSFSEAGRQLASTPSAVSRSVARLEKALGTRLLQRTTRKLRLSDSGK 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++  + ++ +  +         S +P G +R++    +G+ ++  ++ EFL LYP++ +
Sbjct: 70  EVYERSRDIVNAAQAVMEVSGRFSHEPQGLVRLSVPKAVGRFVIHPHIPEFLALYPEVNL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ LD++ ID+  D  D AIR+        L+ R+L++I       PHYL     P   +
Sbjct: 130 EMRLDDRYIDLIDDQIDVAIRITDQ-PPPGLMGRRLLSIDHLLCTTPHYLAEHGTPAHPR 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ I  G+        F   + V     + R +   VN   + +   +   GI  L
Sbjct: 189 DLKHHSCIYLGEEPGDSRWKFRQGSKVFTVNVQGRYA---VNHTGARLDAVLHHIGIGSL 245

Query: 245 PDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P +  K+      +++++ D    +      +  YP       KL+    F+  + R
Sbjct: 246 PYFTAKEALQQGLVIQVLPDWTFKTNYCGDAWALYPPTRHLPPKLRVLIEFLAERLR 302


>gi|331016600|gb|EGH96656.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 304

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 132/299 (44%), Gaps = 11/299 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + +F +V  + SFT A ++L +S S + + +  LE  +G++LF+R  R + LT +G
Sbjct: 3   SLGSIALFVLVTETRSFTLAGKRLGISSSGVGKSVGRLEESLGVRLFHRSTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +L+  Q+EL  +   P G+LRI+  +     L+   + +F+  YP+I+
Sbjct: 63  SIFLDRCRRILSELDAAQLELSNARDLPKGRLRISVPLVF--GLVMPVVIQFMRTYPEIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R  +P   S L+ +++ +  +    +P Y      P   
Sbjct: 121 LDIDFSDRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCIVGSPDYFARHGLPEQP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +          E +           E     +  N+   +++    G GI  
Sbjct: 180 ADLIHHACLQHKFPSTGKFEHWPLRREAGSEDFE-LPQTMVCNTTEVLVEVARAGLGITC 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF----IFLKAR 295
           LPD+++        LV I+ D    + +    +P +   + +L+ F +F    +F  AR
Sbjct: 239 LPDFMLASAIRKGELVPILADYTLHTGSFRLFWPSSKHLSVRLRVFIDFMHANLFAPAR 297


>gi|323494740|ref|ZP_08099841.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323311000|gb|EGA64163.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 313

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 126/291 (43%), Gaps = 7/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  +FT AA+ L +S S +S+Q++ LE+ +GIKL  R  R  T TE G   
Sbjct: 8   QMVVFAALLKHKNFTQAAKSLGVSVSHVSKQLAQLESSLGIKLVQRTTRSFTPTEAGLHF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +++   +   Q+E++    + +G ++I  +   G   +   + E    YP++Q+++
Sbjct: 68  YHHCAQLVTIVGEAQLEVESQRDEVAGLVKIGLSQSFGTLHIIPAIDELRQKYPNLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + ++L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMLEEGLDLWITNNEHLP-EGYVAQRLADSQFVVAASPDYLVKQEVPTHPNQL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +              +  +  +         V+   ++    V G GIA L  
Sbjct: 187 SEHNCLIYRSWERDYTRWA--FSNREEQLSVKVSGNYSVDLAEAVRDAAVAGWGIAYLAT 244

Query: 247 YIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y++ D   N  L++++ +     S   Y  YP       K  A  +FI  K
Sbjct: 245 YLIGDEFKNGQLIQLLPEWRASQSMPFYAVYPSRRFLPKKTSAVIDFIKQK 295


>gi|253687016|ref|YP_003016206.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753594|gb|ACT11670.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 301

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 136/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  +   GSF+ AAE+L L ++++S  I  LE  +G++L  R  R + +T+
Sbjct: 1   MDHIQSMRVFVRIVELGSFSRAAERLALPRATVSNTIKQLEGRLGVRLLQRTTRQVQITD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +    ++  ++E       +   +P GK+R+     L ++++   L +F   YP 
Sbjct: 61  EGRVYYERCLQLLAEIEEIDTLFTQQKQQPVGKVRVDMPHSLARDIVVPALGDFYARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L  ++  I++  +  DC +R  +     +L  R L ++     A+  YL     P 
Sbjct: 121 VTLMLSANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQITCASADYLARYGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H+++ +  L  + +    +++  +R I     S LQVN   + +     G GI
Sbjct: 180 SLDDLSGHHMVGYFSLRTEYLYPLEFMSGNER-ITRMLPSILQVNGADAYIASACAGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P   ++   ++  LV I+ ++  P+  +Y  Y        +++ F  ++  
Sbjct: 239 IQAPRRGLRPFLESGELVEILPEIPPPAMPLYVMYAPGRFLAPRIRVFIEWLDE 292


>gi|152986420|ref|YP_001347980.1| putative HTH-type transcriptional regulator YafC [Pseudomonas
           aeruginosa PA7]
 gi|150961578|gb|ABR83603.1| putative HTH-type transcriptional regulator YafC [Pseudomonas
           aeruginosa PA7]
          Length = 314

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 131/299 (43%), Gaps = 9/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +GSFT AAE+L + ++ +S++IS LE  +G +L  R  R L LTE
Sbjct: 1   MDKLTAMATFGAVVEAGSFTRAAERLSIPKARVSQRISDLERHLGARLLQRTTRSLNLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   + +  +++  +  L+   ++P G LRI     + + +L   L EF   YP 
Sbjct: 61  DGRAYYSKCASILQQVDELEATLRGGLIEPRGSLRIEALASVARWVLAPRLHEFQHRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L   ++   +  +  DCAIR    +  SSL+ R    + +  YAAP YL++     
Sbjct: 121 LTLTLCASDRVSHLLEEGIDCAIR-GGTLPDSSLVARHACDVRLGLYAAPGYLEDTGRAR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +EL +H  +++          F W L + D          L+ +     +  C+ GSG
Sbjct: 180 HPRELREHRRLSW---FTGQRNPFAWKLESTDGSFDLGASQGLRFDDPDVAIASCLAGSG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I     + V+       LV ++         ++  YP     + +++ F ++     R 
Sbjct: 237 ICPAAPFAVESWVRAGALVPVLPQWSFAPRPIHLVYPGDRHLSARVRCFVDWALELMRQ 295


>gi|254787258|ref|YP_003074687.1| LysR family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237684897|gb|ACR12161.1| transcriptional regulator, LysR family [Teredinibacter turnerae
           T7901]
          Length = 296

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 13/292 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R    V   GSFT AAE+L +S   +S+ +  LE ++G +L  R  R L +TE
Sbjct: 1   MDRIETMRALVAVVHEGSFTKAAERLQMSPQLVSKYVGKLEEQLGARLLQRTTRSLHVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++  +    +  +L     +L     +  G+LRI+  +      +   + +F   +P+
Sbjct: 61  AGARYAQRAELLLDELADMDQQLGNFQQEAKGELRISAPVSFAAKHMGPLISDFRQTHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L+++ +DI  +  D A+R+ + ++ SSLI + +  I +   A+P YL+    P 
Sbjct: 121 VTVDLKLNDRKVDIVDEGFDIALRIGR-LRDSSLIAKPIAPIKLVLCASPAYLEKQGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H+ + +  L  + +     L              L  N+   + Q  + G+GI
Sbjct: 180 YPKDLADHHFLRYSYLDAQAIPLNQHLQRARH--------SLVCNNGDLLTQAAIAGAGI 231

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL P +I  D      LV ++ +   P FT+Y  Y        K++AF +FI
Sbjct: 232 ALQPTFIAGDAIKRGELVALLTEHTPPPFTLYAVYSHRTHLASKVRAFIDFI 283


>gi|255589997|ref|XP_002535152.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
 gi|223523923|gb|EEF27233.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
          Length = 311

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 133/296 (44%), Gaps = 5/296 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D  D +  F  VA   SF+ AA +L ++ S+IS+ I  LE  VG+ LF R+ RG++L
Sbjct: 1   MKQDHLDGVTTFVAVAEEKSFSAAAVRLGVTPSAISQTIRNLERRVGLALFNRNTRGVSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +          +L     EL   S KP G LRI         +LQ  L+ FL  Y
Sbjct: 61  TEGGEQYFERVVPAVRELVAATEELGADSDKPMGLLRINVARAGQMVVLQPILRGFLDRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI++ L ++N  IDI     D  IR    ++   +  +   +I     A+P YL+   E
Sbjct: 121 PDIRLDLSVENTLIDIVGRGFDAGIRFGNLVERDMVAIKVGPSISAWILASPDYLRRFGE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   +EL +H  + F       +E ++     D  I       L VN   +++Q  + G 
Sbjct: 181 PRHPRELIEHECVCFRLQSSGQIERWS-FQKDDETIELAVNGRLIVNDSATLVQAGLDGI 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  + +  V+   +   LVR++ D           Y +  +   KL+A  +++  
Sbjct: 240 GIVYMINGYVERLVERGRLVRLLTDWSPTLPGFTLYYADRRRVPAKLRALIDYLRE 295


>gi|330939125|gb|EGH42552.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 303

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 132/300 (44%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+FD + + +F  V RSGSF  AA QL +  ++ISR++  LE ++  +L  R AR L LT
Sbjct: 1   MAFDLNDVALFVQVVRSGSFAQAARQLCMPSNTISRRVQQLEMQLDTRLLQRSARKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +         +     +L     +PSG +RIA   D         +  FL  YP
Sbjct: 61  QAGEVFYGRCVGAVDGVMEAAEQLVSGRDEPSGLVRIAAMADFFDFFSMDWVAGFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCRE 179
            +Q++ +L +   D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDEGHDTMVASPAYIAAHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+Q L  H  ++        +  +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLQSLHSHYCVSAAH--RGGVSAWRLLGPDAKMHEVHIASRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K RD
Sbjct: 238 GIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDKLRD 297


>gi|261252401|ref|ZP_05944974.1| putative transcriptional regulator LysR family [Vibrio orientalis
           CIP 102891]
 gi|260935792|gb|EEX91781.1| putative transcriptional regulator LysR family [Vibrio orientalis
           CIP 102891]
          Length = 291

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEESLNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +     S + ++L     E+ +     +GK+RI    +L + ++      F++ YPDI
Sbjct: 61  GERFFNECSPLLNRLTCAAEEITDECRGAAGKIRIIAPSNLTKRMMMPMFNGFMIQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L   N+   +     D   R+  P + SSLI RK+  +     A+P YLK    P  
Sbjct: 121 NIELTTSNQADQLDPTEWDVIFRVG-PQRDSSLIARKISAVEDILVASPEYLKKYPAPQH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL +H+L+    L+   + + +    V+   G       Q N+   +   C  G GI 
Sbjct: 180 AEELHQHSLLKGAPLLKWQLSNNSGEIVVNNDKG-----RFQANTLNVVRSACSDGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD ++K   D+ +LVR++E+       +Y  Y        K++ F +F+  
Sbjct: 235 LMPDVMIKEYIDDGSLVRVLENWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 287


>gi|77460407|ref|YP_349914.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384410|gb|ABA75923.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 331

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 134/303 (44%), Gaps = 15/303 (4%)

Query: 1   MSFDW-----DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           MS +       ++ +F  V  +GSF+ AA QL  S S++SR IS LE  +  +L  R  R
Sbjct: 1   MSINLPLPLLGEMAIFVKVVETGSFSEAARQLGSSPSAVSRSISRLEKALATRLLQRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            L L++ G ++ +   E+    ++      + + +  G +R++    +G+ ++  ++ EF
Sbjct: 61  KLRLSDGGEEVFKRCQEMVSAAKSVMEISGQFTHEAEGLVRVSVPKAVGRFVIHPHMPEF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           L  YP + ++L+L+++ +D+  D+ D AIR+      + L+ R+L+TI     A P YL 
Sbjct: 121 LRRYPKVDVELLLEDRQVDLIDDHVDLAIRITDR-PPAGLVGRQLLTIDHLLCATPQYLA 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P    +L  H+ I  G+        F       + +          N     +   
Sbjct: 180 EHGTPTHPHDLLNHSCIYLGETPSDARWKF---KKGTKAVTVGVRGRYAANHTGVRLGAV 236

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNF 289
           +   GI  LP +  +   +   +V+++ +    +     ++  +        KL+ F ++
Sbjct: 237 LQHIGIGSLPYFTARYALEQGLIVQVLPEWTFLASYHGGLWLLHSPTRYLPPKLRVFIDY 296

Query: 290 IFL 292
           +  
Sbjct: 297 LVE 299


>gi|83720712|ref|YP_443139.1| transcriptional regulator [Burkholderia thailandensis E264]
 gi|167582148|ref|ZP_02375022.1| transcriptional regulator [Burkholderia thailandensis TXDOH]
 gi|167620306|ref|ZP_02388937.1| transcriptional regulator [Burkholderia thailandensis Bt4]
 gi|257139369|ref|ZP_05587631.1| transcriptional regulator [Burkholderia thailandensis E264]
 gi|83654537|gb|ABC38600.1| transcriptional regulator [Burkholderia thailandensis E264]
          Length = 313

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 129/296 (43%), Gaps = 5/296 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP+
Sbjct: 61  AGERYLQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++    P 
Sbjct: 121 VQVDLTLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIETHGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +          +++  +               +VN   ++      G GI
Sbjct: 181 RPQDLAGHVCLGMV-APGLYWDEWKLMGPHGEESVTLAPPPFRVNVAEALAAGIREGMGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP Y       + + VR+M +  +    +Y  Y        K++ + +F+  + 
Sbjct: 240 GVLPLYSAIAGLRHGDFVRVMPEYRSHVMNIYALYASRQYLDAKIRTWVDFLRDEL 295


>gi|78048556|ref|YP_364731.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036986|emb|CAJ24698.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 309

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 131/290 (45%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+VF  VAR GSFT AA QL LSQS++S  +  LET +GI+L  R  R + +TE G
Sbjct: 15  NLNDLQVFVTVAREGSFTRAAAQLGLSQSALSHTVRALETRLGIRLLTRTTRSVAMTEAG 74

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+L    +    +++     L +   KP+G +RI T        +   L + L  YPD++
Sbjct: 75  SRLFETVAPRLEEIDAQLSALTDFRDKPAGTIRITTAGHAADAYIWPALSKVLPDYPDLK 134

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D    DI  +  D  IRL   +    +         M   A P Y  +   P   
Sbjct: 135 VELTVDYGLSDIVAERYDIGIRLGDQVAKDMIAVPISPMQRMAVVAVPGYFVHHTIPAVP 194

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN I         +  ++      R +          N   +I++  + G G+A 
Sbjct: 195 ADLAQHNCIGLRLPTHGGLLPWD-FDKDGREVKVRVDGQWTFNGSSAILRAALAGGGLAF 253

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+ +V ++     L R++ED   P    Y  YP   +++  LK   + +
Sbjct: 254 LPETMVLEHVAAGRLRRVLEDWCEPFAGYYAYYPSRRQSSSALKVVIDAL 303


>gi|330965841|gb|EGH66101.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 298

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 129/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + +F +V  + SFT A ++L +S S + + I  LE  +G +LF+R+ R + LT +G
Sbjct: 3   SLGSIALFVLVTETRSFTLAGKRLGISSSGVGKSIGRLEESLGARLFHRNTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +L+  Q+EL  +   P G+LRI+  +     L+   + +F+  YPDI+
Sbjct: 63  SIFLDRCRRILSELDAAQLELSNARDLPKGRLRISVPLVF--GLVMPVVIQFMRTYPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R  +P   S L+ +++ +  +    +P Y      P   
Sbjct: 121 LDIDFSDRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCVVGSPDYFARHGLPEQP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +          E +           E     +  N+   +++    G GI  
Sbjct: 180 ADLVNHACLQHKFPSTGKFEHWPLRREAGSEDFE-LPQTMVCNTTEVLVEVARAGLGITC 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD+++        LV I+ D    + +    +P +   + +L+ F +F+  
Sbjct: 239 LPDFMLASAIRKGELVPILADYTLHTGSFRLFWPSSKHLSVRLRVFIDFMHA 290


>gi|325124371|gb|ADY83894.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 298

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +  +F  VA+  SF+  A QL L +S+++  I  LET  G++LF+R  R ++LT+
Sbjct: 1   MDRLQQFFIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPD
Sbjct: 61  DGQRILPECQNLLFDYEQLEQLIQAQKQHYRGTLKISMPSRIVHQVIIPELPDFYSRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL   +   D+     DC +R+ + + +SSLI + +  + M   A+  YL+    P 
Sbjct: 121 IHLQLHSSDDITDLIEKGIDCVVRVGQ-LDNSSLIAKFVGNLIMVNCASADYLEQYGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L +H LI +   + +    F++     +       S L VN+  + +   + G GI
Sbjct: 180 QLEDLSQHKLINYAGAVGEKQGVFSY-----QDGAVMMDSALSVNNTEAYIAAAIAGLGI 234

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP Y V+D      LV ++      S  +   YP       +L+ F  +    ARD
Sbjct: 235 IQLPYYDVQDKIEQATLVEVLSAYTAQSLPLNILYPNRSYIPKRLEIFMEW----ARD 288


>gi|299069854|emb|CBJ41135.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 297

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 131/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR  SFT AA QL +S S++S  +  LET +GI+L  R  R ++ TE G
Sbjct: 5   NYHDLLAFLAVARERSFTRAAAQLGVSPSALSHTVRALETRLGIRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + +++     + E    PSG +RI TT    + LL   L + L  YPD++
Sbjct: 65  ERLLQSIAPRFEEIDAELAAISELRDTPSGTVRITTTDYAIRTLLWPKLSKVLHDYPDVK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D    DI  +  D  +RL   +    +  R    + M    AP YLK    P + 
Sbjct: 125 VEFVTDYGLTDIVAERYDIGVRLGDTLAKDMIAARIAPDLRMVIVGAPAYLKLHPAPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W     +   + R+   L  N    I+   + G G+A
Sbjct: 185 QDLTAHRCINL--RLPTRGGVYAWELKKGQREIQVRVDGQLTFNGVYEILDAALSGYGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+ + + +     L  ++ED        +  YP   +++  L    + +  +
Sbjct: 243 YMPEDLAQPHVAAGRLKWVLEDWFPTFPGYHVYYPSRRQSSRALTLVIDALRDR 296


>gi|86751602|ref|YP_488098.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86574630|gb|ABD09187.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 304

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF   A +L LS++++S+ ++ LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEALAIFAKVVELRSFAATAAELALSKATVSKAVTRLEARLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +++    E  + E    S  P G +R+A  +  G  ++   L +FL  YP++ 
Sbjct: 66  QRLAERAAQLLADGEAAESEALAQSAAPRGLVRLAVPMTFGVKVIAPLLPDFLAAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D  +R+   +  SSL+ R+L  +  +  A+  YL     P   
Sbjct: 126 IDLHLSDAMVDLIGEGFDAGVRIAS-LPDSSLVARRLCAMPRYTVASKAYLAQHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H    +  L    +  + +               L+VN+  +++   + G GIA 
Sbjct: 185 MHLAAHRCFGYAYLSTPNV--WTYTNAEGEQASVRPSGPLRVNNGEAVLPAVIAGLGIAD 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP++IV D      +  I++       +V+   P       +++    F+  + 
Sbjct: 243 LPEFIVGDAIAAGAVEVILQGWHQREGSVHLVMPPGGPRPARVEVLAAFLADRL 296


>gi|269102879|ref|ZP_06155576.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162777|gb|EEZ41273.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 300

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 136/292 (46%), Gaps = 8/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  V   GSF+  AE   +++S +S++IS LE+E+GI+L YR  R LT+TE G 
Sbjct: 4   IDDLVLFTQVIEHGSFSKVAELNSITKSVVSKRISKLESELGIQLIYRTTRKLTITEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+     +    ++    +   S   SG ++++     G+ LL  ++ EF   +P + +
Sbjct: 64  VLYHRAKSISQVAQSAFDAVTGYSEALSGTIKMSVPTISGELLLAESVSEFCKKHPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + LDN  +D+     D  IR    ++ SSLI R +        A+P YL     P + +
Sbjct: 124 NMSLDNHFVDLVAGNFDLVIRTGY-LEDSSLIARHIFNSRWVLCASPEYLAQHGIPNTPK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +HN + +          F+W    +  +   R++     ++  ++ +  + G+GIA 
Sbjct: 183 DLLRHNCLGYNHQASGS---FDWQFIRNDEVYTLRVAGNFSSDNAAALKKVALAGNGIAY 239

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP  +V D      LV I+ +       +Y  YP   K   +++A    I  
Sbjct: 240 LPTCLVYDELHNEKLVEILSEHAGKVVGIYAVYPYTKKPAKRIQALIEHIRE 291


>gi|28868784|ref|NP_791403.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852023|gb|AAO55098.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 297

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 126/288 (43%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +  TE G 
Sbjct: 6   LNDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +L+  L  FL  YPDIQI
Sbjct: 66  QLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    AP Y +N   PL  Q
Sbjct: 126 EVCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFENHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I            + W    D R +          NS + ++   + G G+A 
Sbjct: 186 DLTQHTCINIRHSPNGSC--YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  + +   ++  L  ++ D        +  YP   + +    AF  
Sbjct: 244 VPISLARPHLESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAFVE 291


>gi|26989889|ref|NP_745314.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24984798|gb|AAN68778.1|AE016509_11 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 303

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 135/294 (45%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F   A++GSFT AA  L L++S++ + I+ LE  + ++L  R  R L+LT++G 
Sbjct: 6   FGDIAAFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGL 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++   L+  +  +     KP+G LR+   + LGQ  +   L ++L  +P+++ 
Sbjct: 66  VAFERWRQILDDLDEVESTMALRRGKPTGTLRLTAPLSLGQRHVLPVLDQYLKQWPELRA 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  D A+R+  P + S L+ R +        A+P YL+    P    
Sbjct: 126 DIRFTDRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPAYLEKRGVPQIPG 185

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L  H+ ITF      +P        L   + P        L ++S  +++     G G+
Sbjct: 186 DLYGHDKITFLAGEKAMPWRFHTEAGLHLCEDP------GRLNIDSSEAMLDGARAGFGL 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             LP YI  D+    NLV ++     P+  +   YP     + +++ F + +  
Sbjct: 240 IHLPTYITGDDLRAGNLVEVLHAYRPPADPIRIVYPSKRHLSPRVRGFIDLLVA 293


>gi|53725430|ref|YP_102663.1| transcriptional regulator [Burkholderia mallei ATCC 23344]
 gi|67642686|ref|ZP_00441439.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|76811674|ref|YP_333256.1| transcriptional regulator [Burkholderia pseudomallei 1710b]
 gi|121599164|ref|YP_992800.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124384622|ref|YP_001026411.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126449851|ref|YP_001080316.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126453910|ref|YP_001065972.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134282397|ref|ZP_01769102.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167002929|ref|ZP_02268719.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167719886|ref|ZP_02403122.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167738887|ref|ZP_02411661.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167824482|ref|ZP_02455953.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167846019|ref|ZP_02471527.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167894592|ref|ZP_02481994.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167919255|ref|ZP_02506346.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|226192921|ref|ZP_03788533.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811984|ref|YP_002896435.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242315641|ref|ZP_04814657.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254177469|ref|ZP_04884124.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254180031|ref|ZP_04886630.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254199600|ref|ZP_04905966.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254205918|ref|ZP_04912270.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254261169|ref|ZP_04952223.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254358681|ref|ZP_04974954.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52428853|gb|AAU49446.1| transcriptional regulator [Burkholderia mallei ATCC 23344]
 gi|76581127|gb|ABA50602.1| transcriptional regulator [Burkholderia pseudomallei 1710b]
 gi|121227974|gb|ABM50492.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124292642|gb|ABN01911.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126227552|gb|ABN91092.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126242721|gb|ABO05814.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134246435|gb|EBA46524.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147749196|gb|EDK56270.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147753361|gb|EDK60426.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148027808|gb|EDK85829.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160698508|gb|EDP88478.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|184210571|gb|EDU07614.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|225935011|gb|EEH30986.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237503348|gb|ACQ95666.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238523874|gb|EEP87310.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242138880|gb|EES25282.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243061476|gb|EES43662.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254219858|gb|EET09242.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 313

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 129/296 (43%), Gaps = 5/296 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP+
Sbjct: 61  AGERYLQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++    P 
Sbjct: 121 VQVDLTLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEQHGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +          +++  +               +VN   ++      G GI
Sbjct: 181 RPQDLAGHVCLGMV-APGLYWDEWKLVGPQGEQSVTLAPPPFRVNVAEALAAGIREGMGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP Y       N + VR+M +  +    +Y  Y        K++ + +F+  + 
Sbjct: 240 GVLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALYASRQYLDAKIRTWVDFLRDEL 295


>gi|241758927|ref|ZP_04757039.1| LysR-family transcriptional regulator [Neisseria flavescens SK114]
 gi|241320748|gb|EER56981.1| LysR-family transcriptional regulator [Neisseria flavescens SK114]
          Length = 296

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 141/292 (48%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AA+QL +S +  S+ +S LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAADQLDISTAMASKHVSHLENTIQAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +      +   L E+   YP + + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGGNMSAWLAEYRQRYPKVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ ID+  +  D A+R+ K   S SLI + L  I     AAP YL     P + + + 
Sbjct: 127 LDNRHIDLIAEGFDLALRVSK-TPSPSLIVKPLAKIEFVLLAAPDYLARHGTPDTPEAVM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I       +  ++    AT ++ I       ++ ++ L I +    G+GI   P +
Sbjct: 186 QHQAI-LPSYTNQQDQEITHRATAEKAILH-LSPVIRSDNTLMIRELIKAGAGIGYQPLW 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            V+    +  L++++ D    +  +   Y +    + K+++F +F+  K  +
Sbjct: 244 AVQQELKDGTLIQLLPDYTIWADQLNATYVDRAFLSAKVRSFIDFLNEKISE 295


>gi|83945779|ref|ZP_00958122.1| probable transcriptional regulator [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850782|gb|EAP88644.1| probable transcriptional regulator [Oceanicaulis alexandrii
           HTCC2633]
          Length = 295

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 135/298 (45%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L +F  V     F+ AA  L LS +S+S+ I  LE ++G +L  R  R L LT+
Sbjct: 1   MDRLSTLEIFRKVVDRNGFSAAARDLGLSNASVSKAIKELEAQLGAQLIVRTTRSLHLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    V   L+     ++  +  P G+LR+A  + LG   LQ  L  F   YPD
Sbjct: 61  VGQAYYQRVGGVLDALDDADELVRSETASPRGRLRLAAPLSLGLVALQEALLSFCKTYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L + +  +D+  +  D AIR    +  SSL  RKL+++     A+P YL    E  
Sbjct: 121 ILLDLHMSDAVVDVVGEGFDAAIR-GGNLPDSSLKARKLMSLDRVVVASPDYLARSVELK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H+ + +         +   L      +       L+VNS +++    V G GI
Sbjct: 180 RPEDLSRHDALIYSGAEHS---ETCILKRDGEAVQVQLRPRLRVNSSIAVKSAAVEGLGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+ P   V+   +   LV+++ D       +Y  YPE  + + KL+   + +    R+
Sbjct: 237 AVTPHVYVRQALEEGALVQLLPDWSIEGRALYVVYPEQREVSRKLRVLLDHLAETFRE 294


>gi|317405053|gb|EFV85401.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 299

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 130/287 (45%), Gaps = 6/287 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A  G F  A   L LS S++ + ++ LE ++ ++LF R  R + LTE+G   +   
Sbjct: 10  FVRSAELGGFAAAGRDLDLSPSAVGKAVARLEQDLHVRLFQRSTRRMQLTEEGRLFYERC 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   L+     L ++  +P G+LR++  + +  + L   L  F   YP I++ +  ++
Sbjct: 70  KRILEDLDDAHAMLSQTLREPRGRLRVSAPL-VSYHFLLPVLPAFAARYPHIELDMDFND 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D+  +  D AIR    +  S L  R L +  +  YAAP YL     P   ++L++H 
Sbjct: 129 RIVDLIGERVDVAIRSGD-LPDSRLAARTLGSFRLRLYAAPDYLARHGTPQRARDLERHR 187

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + F       ++++  LA           +    N+  +++   + G GI  +PD++ +
Sbjct: 188 AVRFRYPNAGTLQEWP-LALAAGEAAPRLTAAFTCNNMEALLGATIQGFGIGCMPDFLAR 246

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +      L  +++  +  +      +P     + K++ F +F+  + 
Sbjct: 247 EALAAGRLRALLDAQVNGAGRFQALWPSNRNLSPKVRVFVDFLAERL 293


>gi|50119864|ref|YP_049031.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610390|emb|CAG73834.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 310

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 140/293 (47%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA  GSFT AAE+++L+ S++S+ I+ LE+ + ++LF R  R L+L++ G 
Sbjct: 7   LKGIDLFVCVADVGSFTAAAEKMNLTSSAVSKGIARLESRLQVRLFDRTTRRLSLSDSGV 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  + V   LE  ++ +Q  +  P GK+RI      G+  +   +  F+  +P +  
Sbjct: 67  AFYRTCTSVLADLEEAELAMQSETTDPRGKVRIDLPASFGRLHVLPVILNFIEKHPLLTP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +   ++ +D  ++  D  +R+    I S++L  R L        A+P YL    +P + 
Sbjct: 127 HITFSDRFVDPVVEGIDIIVRIGGSNIWSNTLGHRYLGVQQQIFCASPSYLLKNGQPKNR 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR---ISCLQVNSYLSIMQYCVLGSG 240
           Q+L++H  I + +          W  +  +P    R    + + +      +   + G G
Sbjct: 187 QDLEQHACIVYAENNSMTTP---WHFSGGQPHDTERKAFPARIAIGDGEGQVTAVLAGLG 243

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +++K   D   LV ++ ++ T    +   + ++ +   ++ AF + +
Sbjct: 244 IAQLPSWLIKQQLDKGTLVEVLPELTTEGLPINLAWQKSRQTIPRISAFLDIL 296


>gi|332284144|ref|YP_004416055.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428097|gb|AEC19431.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 313

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 129/296 (43%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LHLS++++++ +  LE  + +KL  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAAETLHLSKTTVTQLVQQLEARLRVKLLNRTTRKVNVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  +   P G+LR+         +L   L  F   YPD
Sbjct: 61  DGAAYYERVLRLLADMDDAETSLSGALASPRGRLRVDVPSPFASMILVPALPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L + ++ +D+  +  DC +R    I + SL+ R    + +  YAAP YL     P 
Sbjct: 121 IQLHLGVSDRVVDLIDENVDCVVR-GGEITNLSLVARHAADLPLAVYAAPSYLAA-GRPD 178

Query: 182 SIQ--ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                EL  H ++       + +     +      I       L V+   + +   + G 
Sbjct: 179 HPSELELSHHRIVGLSWSGTRRIFPST-MCRDGESIHVQGRPALVVDDGNAYLAAGLAGI 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G   LP Y+ + +     L+ +  D       +Y  +P+    + KL+ F +++  
Sbjct: 238 GALWLPTYMAQAHVARGELIPLFTDWQLDPMPLYIAFPQNRHVSAKLRVFIDWLVE 293


>gi|322834202|ref|YP_004214229.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169403|gb|ADW75102.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 297

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 129/293 (44%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +LR F  VA   SF  AA+ L +++SS+S  + GLE  +G +L +R  R ++LTE G
Sbjct: 5   TLAELRAFMAVAEHRSFRRAADLLGITRSSLSHIMRGLEDRLGARLLHRTTRSVSLTETG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  + + + L+    ++     + +G+LRI  +    + LL+  + +F+  YP + 
Sbjct: 65  ERLLKRINPLMNGLDAALEDVAGEPGRLTGELRINGSEGAIRLLLRNIVPQFMARYPGVA 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+ + K +DI  +  D  IRL + +    +  R    +     A+P YL     P + 
Sbjct: 125 LDLVAEGKLVDIVGEGFDAGIRLGEAVPRDMIAVRLSPDMRFLTVASPDYLAAHPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +     +P             + +       L +++   +++    G GIA 
Sbjct: 185 DDLARHQCL--RQRLPSGKRYRWEFHKRGQEVAVDVPGNLTLDNTQLMIEAAQDGLGIAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +P+   +       L+ ++ED   P   ++  +         L+A    +  K
Sbjct: 243 VPEDYAQVALKEGRLIAVLEDWCPPIPGLFLYFAGNRHVPASLRALIEMVREK 295


>gi|86360342|ref|YP_472230.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284444|gb|ABC93503.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 299

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 139/300 (46%), Gaps = 9/300 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LRVF  VA   SFT AA++L +S +  S+ +  LE+ +G +L  R +R ++LTE
Sbjct: 1   MDTLTSLRVFCTVAELKSFTAAADRLGVSPAMASKHVMQLESRLGTRLLNRTSRHVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G      T E+  +L+  +  + + +V P G L+++  +    +     L  +   YPD
Sbjct: 61  TGRLYFNQTREMLERLDEVEDAISKVTVAPRGTLKLSAPVWAATSYFTDMLAAYNRRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + + L L  + +++  +  D A+R     +    L+ R L  +     A+P YL+    P
Sbjct: 121 VCLDLDLSGRLVNLVDEGFDLALRATSQDRLDPGLVARLLTNVQFRLMASPDYLERTGRP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ EL+ H L+ +  +      +   L   D P      + +Q ++   +    + G G
Sbjct: 181 RNVGELNGHALLRYSGV---NFGESMSLEGPDGPHKITFRTAMQSDNETILHLAALRGMG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +A LP ++ + +     L  ++  ++   + T+Y  YP     + K++ F +F+    R+
Sbjct: 238 LAFLPTWMAEQDIEAGRLEIVLPAIMLGFNSTLYAVYPSRKYLSAKVRTFIDFLTASTRE 297


>gi|300694445|ref|YP_003750418.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299076482|emb|CBJ35800.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 310

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 125/296 (42%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L  F  +A   SF  AA++L +S  ++S  +  LE  + ++LF R  R + LTE G 
Sbjct: 6   LSELTAFIAIAEQRSFRAAAKKLGVSAPALSHAVKNLEASLNVRLFNRTTRSVALTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L R        LE    E+  +  +P+G +RI+      + L++  L EFL  YPDI +
Sbjct: 66  HLLRRVGPALADLEDGINEVASAGTRPAGSIRISAAEAGARPLVRHVLPEFLAAYPDIHV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++D + +DI  +  D  IR+   +    +           A A+P YL   + P + Q
Sbjct: 126 EIVVDTRLVDIVAEGFDAGIRVLSDVPQDMIAVEFGPAFRFAAVASPDYLSRHKPPKTPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I F  L          L              + + +   ++   + G GIA +
Sbjct: 186 DLRQHRCIRFRFLSGALYRWE--LERRGSSASIDVDGPMTLGNTNLMVDAALAGIGIAWV 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P+Y V ++     LV ++ D       +   YP        L+ F        R+W
Sbjct: 244 PEYHVVEHLAAGRLVHLLPDWSPSLPGLCLYYPANRHPPAALRLFSQ----AVREW 295


>gi|288961787|ref|YP_003452097.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914067|dbj|BAI75553.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 299

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 138/304 (45%), Gaps = 18/304 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  VA SGSF+ AAE+L +S S +SR ++ LE  +  +LFYR  R ++LTE G 
Sbjct: 4   WDGIDEFVAVAESGSFSRAAERLRVSSSHVSRAVARLEDRLQARLFYRTTRKVSLTESGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSV----KPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
                   +  + +   + +         +  G LR+      G+  +   + + +  +P
Sbjct: 64  AFLDRCQRLAEQRDDAFLAVGALQGGGDSEVKGLLRMTCATAYGEQFVMPLINDLMECHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I++ L N+ +D+  +  D AIRL + +  SSL+  ++    MH  AAP YL+    P
Sbjct: 124 QLSIEVELTNRQLDLVQEGYDLAIRLGR-LSESSLVATRIAPRAMHLCAAPAYLERHGVP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+  L  H  +         + D N    + RP G  R      NS  S++   + G G
Sbjct: 183 DSLASLATHQCLI--GTSDHWLFDDNGTDWLFRPRGRWR-----CNSGFSVLDAALRGFG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKA 294
           +  LPDY V+       LV +++    P+  V+  YP+      K+ A    +     + 
Sbjct: 236 LCQLPDYYVRGPVAEGRLVSLLDRHQPPNTAVWAVYPQKRHVPAKVHAAIRHLKDGLARR 295

Query: 295 RDWK 298
            +++
Sbjct: 296 AEYR 299


>gi|192359615|ref|YP_001982027.1| putative HTH-type transcriptional regulator YcjZ [Cellvibrio
           japonicus Ueda107]
 gi|190685780|gb|ACE83458.1| putative HTH-type transcriptional regulator YcjZ [Cellvibrio
           japonicus Ueda107]
          Length = 306

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 6/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F +VA   SFT AA +L +SQS++S+ I GLE  +G++LF R  R ++LT  G 
Sbjct: 6   LKDLSAFLMVAEEASFTRAAAKLGVSQSALSQTIRGLEERLGLRLFARTTRSVSLTPAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L  +      +++    E+ E   KP+G +RI        ++LQ  +  FL  YPDI I
Sbjct: 66  RLLELIGPAMGQIDMGLEEITELRDKPAGTIRINADEYAVHSVLQPAVTRFLPEYPDIHI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L +D    DI     D  +R    +    +  +      M    +P Y      P ++ 
Sbjct: 126 ELAIDYGLTDIVSGRYDAGVRRGGLVAKDMIAVQISPPHPMAVVGSPAYFARRSTPKTLH 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I     +P   E F W+          ++   L  NS  SI    + G G+A 
Sbjct: 186 DLTEHTCINL--RLPTHGEHFPWVFEKAGKEQRVKVEGSLVTNSIASIRDAALGGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP   V+D+     ++ ++          +  YP     +     F   +
Sbjct: 244 LPQAYVRDHLAAGQVIEVLASWRKTFEPYHLYYPNRRHPSPAFSLFVEAL 293


>gi|153827879|ref|ZP_01980546.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148876724|gb|EDL74859.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 301

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P
Sbjct: 125 DVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLADHRCLT-GSVKRWSYQHKETKQTLD----VPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFQDWHIPSVDFSLIYHKDKYKPVRLKRFIEF 290


>gi|187919501|ref|YP_001888532.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717939|gb|ACD19162.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 331

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 12/295 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTAAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   + T + E   +  +PSG LR+ +   +GQ+ +   +  +  LYP+
Sbjct: 61  AGERYLTRCKQILADVATAEEEASCAHERPSGALRMHSFASIGQHYVLPAISRYRALYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+    AD A+     +  S L+   L T      A+P Y++    P 
Sbjct: 121 VTVELTLSQRMPDLFEGSADVAVIGASTLPDSELVSLPLGTTFSIMCASPAYVRAHGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
              +L  H  +    L        +W+  +D P G   +     + VN   S++     G
Sbjct: 181 QPADLAHHECLI---LHTPAFPPHDWV--LDGPNGSEMMGVNGPVHVNIAESLIVAIREG 235

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI +LP Y       +  LVR++ +       VY  YP       K + +  F+
Sbjct: 236 MGIGMLPLYAAISGLRDGTLVRVLPEYTAQKMNVYALYPSRKFVDAKTRTWVEFL 290


>gi|327194059|gb|EGE60933.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 314

 Score =  241 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 126/288 (43%), Gaps = 4/288 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GSF+ AA    L +S +SR+++GLE  +G++L  R  R L +TE G  L   
Sbjct: 2   LFAAVVHHGSFSAAALAHGLPKSKVSRRVAGLERRLGVRLLQRSTRALHVTEVGQALLPH 61

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +    +        +   PSG+L+++  I +    L   L +FL  +P ++ +L L 
Sbjct: 62  CESMAESAQAALEVAASAGEYPSGRLKVSCPIGVAHIYLAPVLGKFLKAHPAVEFELDLT 121

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +D+  +  D A+R+R  +  S+L+ R L T      A+P ++       S   L + 
Sbjct: 122 NRRVDVIAEGYDVALRIRSSLDDSNLVVRSLGTSEQMLVASPEFIATHGPFGSADSLQRK 181

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             +     +      ++ L      I    +  L  +    + Q  + G G+A LP  I 
Sbjct: 182 PGVG-PAGVRGERNFWSLLKPDGVSIDIEYLPTLMTDDVYVLCQAALAGIGVARLPVNIC 240

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D   +  LV+++      +  ++  +P        ++AF +F+  + 
Sbjct: 241 GDAIRDGRLVKVLPHYRLHAHGLHAVFPSRRGLVPAVRAFLDFLAEEL 288


>gi|161523039|ref|YP_001585968.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348135|ref|YP_001941331.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160346592|gb|ABX19676.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189338273|dbj|BAG47341.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 300

 Score =  241 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   LRVF +VAR  SF+ AA+ L +S S +S+++  LET +GI+L +R  R +++T+ G
Sbjct: 9   ELGDLRVFCMVARKASFSAAADALAMSSSYVSKRVGMLETSLGIRLLHRSTRRVSVTDAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++    ++   +E    ++  +   P G LR++++   G+N++   L E    +P + 
Sbjct: 69  ERVYAWAEKILDDVEHLVEDVSSTRRVPRGTLRVSSSFGFGRNVVAPALAELSDRHPQLN 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D++ +  D  IR+   I +  LI ++L T H    A+P YL     P  +
Sbjct: 129 VRLELFDRIVDVAAEGFDVDIRIGDEI-AGHLIAKQLATNHRVLCASPDYLARHGAPKQV 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +   +           L      +       L  N     +Q+ + G GI L
Sbjct: 188 GDLASHACLAIKERDHPFGVWR--LDARGETVSVQVTGPLSSNHGEVAVQWALAGRGIVL 245

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + V+   D   L R++  V  P+  V+  YP  L  + K++A   F+  + 
Sbjct: 246 RSVWDVQPLLDAGRLQRVLPGVTQPA-NVWAVYPARLAQSAKVRACVEFLKDRL 298


>gi|206560654|ref|YP_002231419.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198036696|emb|CAR52595.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 324

 Score =  241 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L  
Sbjct: 121 RYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL+  +L     +    +  + +  FN +A             L     ++I +  +
Sbjct: 181 NAPPLAPDDLTGFETLDTPSVDGRHV--FNLIAPDGTRHVHEHDPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|170733562|ref|YP_001765509.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169816804|gb|ACA91387.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 324

 Score =  241 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L  
Sbjct: 121 RYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL+  +L     +    +  + +  FN +A             L     ++I +  +
Sbjct: 181 NAPPLAPDDLTGFETLDTPSVDGRHV--FNLIAPDGTRHVHEHDPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|90577583|ref|ZP_01233394.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90440669|gb|EAS65849.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 309

 Score =  241 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 133/285 (46%), Gaps = 5/285 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + VF  V + G F  AAE    S S +S++I+ LE+ +G++L  R  R + LT +G 
Sbjct: 7   FDGINVFVQVVKCGGFGAAAEVTGHSNSYVSKEITKLESRLGVRLLNRTTRSIALTPEGK 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++    E    E+ +S+V+P G L+++  +  G++ L      +L  YP++ +
Sbjct: 67  TYYQECVQLISDAEQAIAEITQSTVEPKGTLKVSCPVWFGKHYLADVFTTYLSRYPEVTL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +K ID+  D  D  IR    +  SSLI +++    +   +   YLK+   P    
Sbjct: 127 DLDMSDKPIDVIADGYDLVIRATAKLDDSSLICKRIYRSRICTVSTKQYLKDHGYPQHPS 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+   + +L  K    + +L              +  N+    ++    G GI  +
Sbjct: 187 ELSAHSCFCYTNL--KKFNMWEYLDKAGNKTLVEVQQRVLSNNTEMSLELVTKGLGIIRV 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P++ ++    + +L  + +D I P   VY  YP     T K++ F
Sbjct: 245 PEFYIETQLQSGDLTLLFDDYIFPEIDVYALYPTRKHVTSKVRFF 289


>gi|15599090|ref|NP_252584.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116051932|ref|YP_789225.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254242588|ref|ZP_04935910.1| hypothetical protein PA2G_03342 [Pseudomonas aeruginosa 2192]
 gi|296387585|ref|ZP_06877060.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313109319|ref|ZP_07795285.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9950077|gb|AAG07282.1|AE004807_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115587153|gb|ABJ13168.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126195966|gb|EAZ60029.1| hypothetical protein PA2G_03342 [Pseudomonas aeruginosa 2192]
 gi|310881787|gb|EFQ40381.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 317

 Score =  241 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 136/298 (45%), Gaps = 13/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +GSFT A++QL+ + + +SR ++ LET +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+GKL++ +   +GQ+ +   +  +   Y D
Sbjct: 61  AGQRYLLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + N+  D+  +  D AI +   +  S  I +++   +    A+P YL+    P 
Sbjct: 121 VTFDLTMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPS 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVL 237
              EL  H+ +    L+   +    WL   D P G+  +S      QVN   ++ +    
Sbjct: 181 EPSELASHDCL---RLVSPVVPLDRWLF--DGPNGQEMVSIGASPFQVNVGDAMTEAIRS 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI +LP Y   ++     LVR++         VY  YP       K+K +  ++  
Sbjct: 236 GLGIGILPVYSAIEDLGKGTLVRVLPQHRLQQLNVYALYPSRQYLDAKIKTWVEYLKE 293


>gi|73542969|ref|YP_297489.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120382|gb|AAZ62645.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 303

 Score =  241 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 123/296 (41%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   GS   AA    ++   I R+I+ LE  +G+KL +R  R + +TE
Sbjct: 1   MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARIGVKLLHRSTRRIVVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG+       +    L+  ++ + E   K +G L ++     G+  +  +   FL   P+
Sbjct: 61  QGAVFMEQCKKALADLDRAEMLIAEGKHKATGHLIVSAPAAFGRKHVAPHAPAFLAANPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI   L ++ +D+  +  D  IR+   I   + +  KL T        P Y      PL
Sbjct: 121 VQISFNLTDRVVDLVREGYDVGIRIGGAI-DPNFVAIKLATNKRVVCGTPAYFAKHGVPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           ++ +L+ HN + F     +  +   W    +      R++  L  N    + ++     G
Sbjct: 180 TLDDLEHHNCLAFNL---QGGQQRGWYFQQNGKTVTVRVNGNLDCNDGELLHRWTGEHLG 236

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     + +    ++  LV ++++   P + +   YP+      K++ F   +  +
Sbjct: 237 LGWRSTWEILPQLESGELVTVLDEYALPDYDILAVYPQQRPVPAKIRFFIEHLKAQ 292


>gi|146310215|ref|YP_001175289.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145317091|gb|ABP59238.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 299

 Score =  241 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 10/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA +  L +SS+S+++S LE +VGI+L  R  R L LT  G 
Sbjct: 5   LQDMALFALVAEMGSFTAAARKAGLPKSSVSQRVSQLEQQVGIRLLNRTTRKLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E+    E  +  +Q     PSG+LRI     +G  LL     +F   YPD+ +
Sbjct: 65  HYLVHCREMLAASERAEYAIQRLRDNPSGRLRITCPAGIGATLLAHLNADFQRRYPDVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + +  +D+     D A+R  KP Q SSLI R +     +  A+P YL  C      +
Sbjct: 125 DVCISDDLLDLVESGFDVALRTGKP-QDSSLIGRMIGHCPRYMLASPDYLARCEPLEHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  IT      K   ++      +     P  + +  ++ +   +  + G+GI LL
Sbjct: 184 QLVEHRCITH-----KAWPEWLLRRESEDYRHLPDNAHI-SDNLVYARESAIAGAGITLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P ++++D   N  LV+++ +       ++  YP    N+  L ++ +F
Sbjct: 238 PAFLLEDKLENGALVQVLSEWNVEGNELWLAYPSRKLNSPALMSYVDF 285


>gi|323499532|ref|ZP_08104502.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio sinaloensis DSM 21326]
 gi|323315405|gb|EGA68446.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio sinaloensis DSM 21326]
          Length = 291

 Score =  241 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 142/293 (48%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +   S +  +L +T  EL +     +GK+RI    +L + ++      F+  +PDI
Sbjct: 61  GERFYNECSPLLGRLTSTAQELSDECRGAAGKIRITAPSNLTKRMMMPMFNAFMKDFPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L   N    +     D   R+  P + SSLI RK+ ++     A+P YL  C  P  
Sbjct: 121 NLELTTSNHSEQLDPTEWDVIFRVG-PQRDSSLIARKINSVEDILVASPEYLSRCPAPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL +H+L+    L+   + + N    ++   G       Q N+   +   C  G GI 
Sbjct: 180 AEELHQHSLLKGAPLLKWQLSNQNGETVINNDKG-----RFQANALNVVRSACSDGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD ++K   D+ +LVR++ED       +Y  Y        K++ F +F+  
Sbjct: 235 LMPDVMLKEFIDDGSLVRVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 287


>gi|241518470|ref|YP_002979098.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862883|gb|ACS60547.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 296

 Score =  241 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 131/294 (44%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +L+ F  V  +G FT AA +   SQ ++S+ I  LE  +G+ LF R  R +TLT+
Sbjct: 1   MDRLSELKAFLAVVETGGFTAAARRTGTSQPAVSKAIGALENRLGVALFNRSTRNVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG +       +  +++    E+  S+V  SG +RIA    LG+  +   + + L  +P 
Sbjct: 61  QGQRYFDRMKPLLEEIDNANREVIGSAVDMSGSIRIAVPTTLGRLHILPIIPDLLSRFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L+L +   D+  D  D  IR+   ++    + R++    +    +  Y +    P 
Sbjct: 121 LEVDLVLSDLMRDMVEDRVDLVIRVGS-VEEPDAVVRRVAKTPLVCVGSRQYFEKHGIPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  HN + +G         F      +          L  NS  +I    + G GI
Sbjct: 180 KPADLADHNCLVYGGFKESANWPF---VGQEGHFSVAVRGNLTSNSIETIRAGVLAGVGI 236

Query: 242 ALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +     +V++  +P++V I+ + +  +  + F +P+    + +++   +F+  
Sbjct: 237 GMFTKASLVEELSHPDVVTILGEYVQGTRDISFVWPKRRLVSARVRHVTDFLAA 290


>gi|307728251|ref|YP_003905475.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307582786|gb|ADN56184.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 315

 Score =  241 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 140/291 (48%), Gaps = 10/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRQVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +LE  +  +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQVLTELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R +   H+   A+P YL+    P +  +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARPIAMAHLVLCASPAYLRRRGIPKTAADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +  +        + + +            L VN   +     + G+GIALL  
Sbjct: 187 ARHNFLQYAGVSA-----LDVMQSTGEAARVRLSGNLIVNHLEAQRVMVLHGAGIALLGT 241

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++  +     LV ++ D + P    ++  Y      + K+++F +F+  +
Sbjct: 242 EVIGADLAEGRLVPLLVDEMPPRELPIHVVYASRRHLSAKVRSFVDFLAER 292


>gi|187930542|ref|YP_001901029.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187727432|gb|ACD28597.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 303

 Score =  241 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 57/292 (19%), Positives = 122/292 (41%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   GS   AA    ++   I R+I+ LE  +G+KL +R  R + +TE
Sbjct: 1   MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVKLLHRSTRRIAVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG+       +   +L+  ++ + E   K +G L ++     G+  +  +  +FL   PD
Sbjct: 61  QGAVFMEQCKKALGELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPDFLRANPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I   L ++ +D+  +  D  IR+   I   + +  +L +        P Y      P 
Sbjct: 121 VRISFNLTDRVVDLVREGYDVGIRIGGAI-DPNFVAIRLASNKRVVCGTPAYFAKHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +HN + F     +    +       + +       L  N    + ++   G G+
Sbjct: 180 TLDDLARHNCLAFNLQGGQQRGWY--FQQNGKAVTVKVNGNLDCNDGELLHRWMGEGLGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                + ++   ++  L+ +++D   P + +   YP+      K++ F   +
Sbjct: 238 GWRSTWEIQPELESGALMTVLDDYALPDYDILAVYPQQRPVPAKIRFFIEHL 289


>gi|323525206|ref|YP_004227359.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382208|gb|ADX54299.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 308

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 134/292 (45%), Gaps = 11/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F  A+E + ++   +SR I+ LE  + I+LF R  R ++LTE+G + +
Sbjct: 12  ISVFAAVVDAGTFAAASEVIGMTPPGVSRAIARLEKRLNIRLFNRTTRSVSLTEEGRRFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE         +    GKLRI     + + +L   L  F+  +P++ I+ I
Sbjct: 72  EQVMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRTILGQPLDAFMDAHPELDIECI 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
             +   D+ MD  D A+R  +P ++S+LI RKL+   +   AAP Y+     P   + L 
Sbjct: 132 ARDSLGDLVMDGFDLAVRFGEP-RASTLIARKLLDTPIVTVAAPSYVARHGRPAKPEGLE 190

Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              H  + F +  P+  + F W     R  +       L VN   +++  C+ GSGIA +
Sbjct: 191 SRSHRCLEFRN--PETGKPFQWEFHRRRKRLVVDTRGRLTVNDPGALLNACLAGSGIAQM 248

Query: 245 ----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                + ++ D   L+ +  +     + +Y  YP       K +AF +FI  
Sbjct: 249 LLLGAEPLIAD-GRLINLFPEWTDERYPLYAYYPSRHHVPAKTRAFLDFIVE 299


>gi|260774001|ref|ZP_05882916.1| LysR-family transcriptional regulator [Vibrio metschnikovii CIP
           69.14]
 gi|260610962|gb|EEX36166.1| LysR-family transcriptional regulator [Vibrio metschnikovii CIP
           69.14]
          Length = 300

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 133/296 (44%), Gaps = 13/296 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA + SFT  A++L +S+  ++R I  +E+ +  +L  R  R ++LT  G +   
Sbjct: 8   QVFLDVAITQSFTATADRLDISRPMVTRHIETMESWLQTRLLNRTTRKVSLTTAGEQCLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  + +  + +L +S    +GK+RIAT++  G   L   +K FL  +P ++I + +
Sbjct: 68  AIKLWVEQAQQLEHQLMDSQS-LAGKIRIATSMSFGFAQLIPAVKPFLAKHPQVEIDIDV 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +K  D+  +  D AIR+       SLI R +        AAP YL          +L +
Sbjct: 127 QDKTADLIAERIDLAIRIAAD-PDPSLIGRPIAKCDSILVAAPSYLAAHPAITQPSDLTQ 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  + +     K  E   W  T    +    +SC L  N   +++   V G GIAL P Y
Sbjct: 186 HACLGY-----KNFERHIWHLTKGETLQSVEVSCRLTANEATTLLHAAVHGMGIALQPTY 240

Query: 248 I---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KARDWK 298
           +         +V ++ D    + ++Y  YP     +  ++A  + +     + DW+
Sbjct: 241 LTSGALAKGEVVSVLADWQPKTMSIYALYPSRRHLSPAVRALIDHLADYFASHDWQ 296


>gi|237729981|ref|ZP_04560462.1| transcriptional activator TtdR [Citrobacter sp. 30_2]
 gi|226908587|gb|EEH94505.1| transcriptional activator TtdR [Citrobacter sp. 30_2]
          Length = 313

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE+ +G  L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILESTLGTTLLSRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +    +    ++ +    P+G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHAQAILAGYQHLVDDVTQLKTCPAGMIRIGCSFGFGRSYIAPAITELMHSYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID++ D  D  IR+   I     I   L        AAP YL+   EP+++QE
Sbjct: 129 FELYDRQIDLAQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPPYLQKYGEPMTLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     +++  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGVWELDNGQEKKSVKVAGHLSSNSGEIVLQWALQGKGIMLR 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ V+    +  LVR++ D    S  ++  Y E L  + KL+    F+
Sbjct: 245 SEWDVQPFLASGELVRVLPDYAQ-SANIWAVYQEPLYRSVKLRVCVEFL 292


>gi|296386647|ref|ZP_06876146.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 306

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 6/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G +  
Sbjct: 1   MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD+ I+L 
Sbjct: 61  ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+ +L+
Sbjct: 121 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +   D  P   E + +          P+ +   VN    + Q      GIALLP Y
Sbjct: 181 RHVCLRLQD--PAYPEGWIFADEQGERTVSPQ-NTFMVNVAEVMAQAAKADLGIALLPSY 237

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +      N  L+R++        T+Y  YP       K++ + + +  + 
Sbjct: 238 VAAAALRNGELLRVLPGHAMHERTIYALYPSRRYLDAKIRTWVDLLQQEL 287


>gi|16763713|ref|NP_459328.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167993350|ref|ZP_02574445.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168465405|ref|ZP_02699287.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194444233|ref|YP_002039573.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197247663|ref|YP_002145313.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265075|ref|ZP_03165149.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205351653|ref|YP_002225454.1| lysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855815|ref|YP_002242466.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|16418833|gb|AAL19287.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194402896|gb|ACF63118.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195631607|gb|EDX50127.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197211366|gb|ACH48763.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197243330|gb|EDY25950.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205271434|emb|CAR36245.1| putative lysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205328599|gb|EDZ15363.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|206707618|emb|CAR31902.1| putative lysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261245616|emb|CBG23412.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992024|gb|ACY86909.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156945|emb|CBW16428.1| putative lysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911366|dbj|BAJ35340.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225049|gb|EFX50110.1| Putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323128647|gb|ADX16077.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326626685|gb|EGE33028.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332987281|gb|AEF06264.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 321

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I     I R+L T      A+P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDIN-ELYIARQLATNRRILCASPEYLERHGKPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   K     NW+ T  +     R++     NS   ++ + + G GI L 
Sbjct: 200 LVQHDCLMIQE---KNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITLR 256

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    +   LVR++      +  ++  Y     ++ ++K   +F+  
Sbjct: 257 SEWDVAQYIERGELVRVLPQWYQEA-NIWAVYTRRSSSSDRIKICIDFLTE 306


>gi|84394302|ref|ZP_00993026.1| AphB/LysR family protein [Vibrio splendidus 12B01]
 gi|86148373|ref|ZP_01066666.1| AphB/LysR family protein [Vibrio sp. MED222]
 gi|84375070|gb|EAP91993.1| AphB/LysR family protein [Vibrio splendidus 12B01]
 gi|85833856|gb|EAQ52021.1| AphB/LysR family protein [Vibrio sp. MED222]
          Length = 291

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 143/293 (48%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +     S +  +L +T  EL +     SGK+RI    +L + ++     EF+  YPDI
Sbjct: 61  GERFFNECSPLLQRLSSTAEELTDVCKGASGKIRITAPSNLTKRMMMPMFSEFMTQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+++N+   +     D   R+  P + SSLI RK+  +     A+P YL     P  
Sbjct: 121 NIELMMNNQADQLDPTEWDVIFRVG-PQRDSSLIARKISEVKDILIASPDYLAKNPAPSH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H+L+    LI   + + N    V+   G         N+   + Q C  G GI 
Sbjct: 180 AEELANHSLLKGYPLIKWQLSNSNEETVVNSEKG-----RFNANALNVVRQACSEGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD +++   ++ +LV+++ED       +Y  Y        K++ F +F+  
Sbjct: 235 LMPDVMIREYIEDGSLVQVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 287


>gi|116049812|ref|YP_791381.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389746|ref|ZP_06879221.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313110563|ref|ZP_07796448.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|115585033|gb|ABJ11048.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310882950|gb|EFQ41544.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 295

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L+ F  V  SGS + AAEQ+ L+ S++SR +S LE ++G  L  R  R + LT
Sbjct: 1   MKANSDELQSFVSVVDSGSISAAAEQMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++  ++E  +  L      P+G+LRI        + +  ++ EF  LYP
Sbjct: 61  EEGRYFLDQARQILQQMEALEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ++L  ++  ID+     D AIR+   +  S+L  R L    +H  A+P YL     P
Sbjct: 121 NIQLELNTNDLIIDLLEQRTDVAIRIGA-LSDSTLHARPLGASRLHILASPEYLARHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            SI+ L  H L+ F    P+ +  +  + A  DR   +P IS    +S  ++ Q  +   
Sbjct: 180 TSIEGLRGHTLLGFTQ--PEHLNRWPVVHADGDRLEIQPDISA---SSGETLRQLALSHQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIA L  ++      +  LV +  + ++     ++  Y    +   +++ F +FI  + 
Sbjct: 235 GIACLASFMTDRDIQDGRLVPLFAEQMSEYRQPIHAVYYRNSQLALRIQCFLDFIQQRL 293


>gi|73537527|ref|YP_297894.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120864|gb|AAZ63050.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 305

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 140/301 (46%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSFT AA  + +S +++SR ++ LE  +G +LF R +R L+LT  G
Sbjct: 6   DFEGLAMFAKVAEEGSFTAAARVMGVSVATVSRGVARLEERLGARLFNRTSRELSLTGFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +      +Y + E  +   +E SV+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  QTICDKAGAIYRQAEEAESAAREMSVQPRGLVRLAVPMSFGLRWVAPLLPGFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + L +  +D+  D  D A+R+   +  SSL+ R+L  +     A+P YLK    P   
Sbjct: 126 IDMHLSDASVDLVADGYDAALRIAA-LPDSSLVVRRLCAVTQFVVASPAYLKREGRPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL   + +++       +  F     V           L+V +  +++   + G  IA 
Sbjct: 185 RELADRSCLSYAYRARSDVWRFT--NAVGEEESVMPTGPLRVTNSEALLPTLLDGLAIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD--WK 298
           LP++I  +   +  L  I+ D       +YF  P A     K+ A  ++      +  W+
Sbjct: 243 LPEFIAGEYLADGRLETILTDWSLTKGGLYFVTPSARARPAKVAALSDYFAEHLSEPTWR 302

Query: 299 F 299
           +
Sbjct: 303 W 303


>gi|253689589|ref|YP_003018779.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756167|gb|ACT14243.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 293

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 131/293 (44%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F  V  +GSF+ A+ +L + Q ++S+ I  LE ++   L  R  RGLT TE
Sbjct: 1   MDRLSALETFICVFETGSFSAASRRLGIGQPAVSKAIMQLENQLATPLLLRSTRGLTPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   S     L   Q ++   S   SG+LRI   +   +  +   L EF+  +P 
Sbjct: 61  AGQHFYEQISPALKMLGEAQEQVVSGSAALSGRLRICAPVTFARLHIMPRLHEFMAEHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + +ILD++ ID+  +  D A+RL + ++ SSLI ++L +  M   A P Y      P 
Sbjct: 121 LNVDVILDDRPIDLIAEGIDVALRLGE-MKDSSLIAQRLASCSMRLLATPDYFARHGAPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSG 240
           S   L  H  + +     +      W+ + D           ++V++   +    + G+G
Sbjct: 180 SPDVLAAHPAVIY----LQGERTNRWIFSRDGAQTTVFPKGRIRVSAAEGVRAAVLSGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+  +++     ++  +V  ++        ++  YP     + + + F +F+
Sbjct: 236 LAVASEWMFAPELESGQVVTALDSWALGKMDLWAVYPGGRMTSARARIFTDFV 288


>gi|218709187|ref|YP_002416808.1| transcriptional Regulator [Vibrio splendidus LGP32]
 gi|218322206|emb|CAV18320.1| Transcriptional Regulator [Vibrio splendidus LGP32]
          Length = 294

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 132/301 (43%), Gaps = 15/301 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +  F  VA    F+ AA+QL  S S +SRQ+S LE  VG+ L  R  R ++LTE
Sbjct: 1   MDSFEGINEFVAVAECHGFSAAAKQLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   ++   L+    ++     + SG LR++      +N +   +  F   +PD
Sbjct: 61  SGHTYYQQCKDLVIGLQQANEQVTSQQAQLSGTLRVSAAGAFAENHVAAAMMAFAKDHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  +   ++   D  D AIR  + +  S L+ RKLV   M A A+ +Y+     P 
Sbjct: 121 LTIEMNFNTNMVNFIEDGIDFAIRYGR-LDDSGLVARKLVDRPMAAAASQNYIDQFGSPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
             ++L  H+ I              WL   D +P+   R+    + N+  ++++ C  G 
Sbjct: 180 QPEQLKWHSCIIANSD--------QWLFEKDGKPLNAVRVHGRWKSNNSSAVLKACEEGL 231

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  LP         N  LV ++E+      + +  Y        + +   +F+     D
Sbjct: 232 GIVYLPKSSFNGGLANGKLVPVLEEYWGAGTSSWIVYQNRRFLPQRARLAIDFLVSYFSD 291

Query: 297 W 297
           W
Sbjct: 292 W 292


>gi|330969872|gb|EGH69938.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 303

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 128/300 (42%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+FD + + +F  V RSGSF  AA  L +  +++SR++  LE ++  +L  R  R L LT
Sbjct: 1   MAFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +         +     +L     +P G +RIA   D         +  FL  YP
Sbjct: 61  QAGEDFYGRCVSAVDGVMEAAEQLVSGRDEPRGLVRIAAMADFFDFFSMDWVAGFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCRE 179
            +Q++ +L +   D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDEGHDTMVASPAYIAAHGL 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+  L  H  ++        +  +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLHSLHGHYCVSAAH--RGGVTAWRLLGPEAKMHEVHIASRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K RD
Sbjct: 238 GIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDKLRD 297


>gi|115358490|ref|YP_775628.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283778|gb|ABI89294.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 315

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 78/303 (25%), Positives = 128/303 (42%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD
Sbjct: 61  AGESYLRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHTQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P 
Sbjct: 121 VSIELSLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPEYVKRHGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +T         E    L   +          +Q N+  S+      G GI
Sbjct: 181 RPQDLGAHACLTLCTPAFPTHEWV--LEGAEGVEQIHVAGPVQTNTAESLALAIRDGIGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----- 293
            +LP Y   D   +  LVR++ D I     VY  YP       K++ +   +  +     
Sbjct: 239 GMLPLYSAIDALRDGTLVRVLPDHILQKMNVYALYPSRRFVDAKVRTWVEMLRAQVPGMI 298

Query: 294 ARD 296
           ARD
Sbjct: 299 ARD 301


>gi|66044803|ref|YP_234644.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255510|gb|AAY36606.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 309

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 133/290 (45%), Gaps = 4/290 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF +VA  GSFT AAE+L+L+ S+IS+ I+ LE  +  +LF R  R L+LTE G 
Sbjct: 7   LKGIDVFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  + V   LE  +I L  +  +P GK+RI      G+  +   + +F+  +P +Q 
Sbjct: 67  TFYRTCTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPLSI 183
            +   ++ +D   +  D  +R+       + I  +   T  +   A+P Y+K   +P ++
Sbjct: 127 HVSFSDRYVDPVHEGIDIVVRIGGSDAWPAAIAHQFFGTQKLIFCASPEYVKQYGQPKTV 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +LD H  I +G      +  +                 + V      +   + G GIA 
Sbjct: 187 SDLDDHQCIGYGQNDGMAIPWYFKGRQPGDMERRIMHPHIAVGDGEGEVMAVLAGLGIAQ 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++V+   ++  LV ++ D+ T    +   +  + +   K+ A   ++
Sbjct: 247 LPTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAYL 296


>gi|306846367|ref|ZP_07478918.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306273210|gb|EFM55101.1| LysR family transcriptional regulator [Brucella sp. BO1]
          Length = 297

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G
Sbjct: 5   NLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++ +   ++ E   +P+G +R++      Q++L   L+ FL  +PDI 
Sbjct: 65  ERLLAQVGPALAEIASGFAQIGELRERPAGTVRLSADEYAIQSVLWPALERFLAEFPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   
Sbjct: 125 IELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKSGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   E F W  +   + I       L   S   ++Q C+ G G+A
Sbjct: 185 QDLSDHDCINL--RLPTHGEFFAWTYSQHGKDIRITTQGRLVFTSIAQVLQACLAGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP        ++  LV ++ D        +  YP   ++   L A    +
Sbjct: 243 YLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEAL 293


>gi|15890711|ref|NP_356383.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15158982|gb|AAK89168.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 295

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 129/286 (45%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA +GSF  A  +L +S S++ + I+ LE E+G++LF R  R +TLTE G    
Sbjct: 7   LGIFIQVAEAGSFVAAGHRLGISGSAVGKAIARLEDELGVRLFNRSTRSMTLTEDGGFFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + ET Q +L  S   P G+LR++    L   LL   +  F+  YPDI + L 
Sbjct: 67  DTCRRIQSEYETVQAQLSRSQAIPRGQLRVSLP--LAGMLLMPTISAFMDAYPDINLDLD 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  IR    I+ + L+ RKL T      AA  YL+    P   ++L 
Sbjct: 125 FTDRLVDVIEEGFDAVIRTGD-IRDTRLMSRKLGTFKHRIVAARGYLEAHGWPTVPEDLA 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +          E +  L    R I          ++   ++       G+  LP +
Sbjct: 184 RHRCLHHRFANSGKFEPWP-LVRDGREIRIDLPVATVASTLEPLIYLAERSFGVTCLPSF 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V        LV +++D +  + T    +P     + K++AF +++
Sbjct: 243 AVASEIAEGKLVSLLDDYVADTGTFCVLWPTNRYLSPKVRAFVDYM 288


>gi|239813744|ref|YP_002942654.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800321|gb|ACS17388.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 301

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   +   L+V    AR G+ T AA  L ++ ++ S  +  LET++G +LF R  R + L
Sbjct: 1   MKIENLSDLQVLVQTARGGTLTAAAHALGMTPAAASATLKRLETQLGARLFERSTRAMRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T QG  L       +  L+  +  +     +  G LR+A   DL ++ L     EFL L+
Sbjct: 61  TSQGQTLLDYAVRAFELLDEGESLVTAERGELVGTLRVAAPSDLTRSTLLPWFDEFLALH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +Q+ L + ++ +D++ D  D A+R    +  S L+ R     +    A+P YL+    
Sbjct: 121 PGVQLSLSVGDRLLDVTRDEVDVALRYGA-LADSRLVARPFALTNPLLTASPAYLRRHSA 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLG 238
           P + Q+L  HN +TF            W    +    E R+   + V+      ++ V G
Sbjct: 180 PKTPQDLVHHNCLTFD---RGGRRHRTWRFAQNGQWTEVRVKGDRSVDDASLAREWAVAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI L     V+++     LVR++ +  T  + ++   P       +++A  NF+ LK
Sbjct: 237 LGIVLKSALDVREDLRKGALVRLLPEWDTEPYPLHALLPSGRFVPARVRALVNFLALK 294


>gi|110634752|ref|YP_674960.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285736|gb|ABG63795.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 304

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 127/290 (43%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F  VA  G FT AA+ L  S S+++++++ LE  +G++L +R  R + LTE G+
Sbjct: 14  FQDILAFARVAELGGFTAAAKVLSSSTSTVTKRVTRLEETLGVQLLHRTTRRMHLTEFGA 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++   L+     ++++ +  SG +R+A     G+  +   L +F   +P++ +
Sbjct: 74  EYYERCKQILSDLDDADSAIRDAHISASGLVRMALPPSFGRMTVIPALAQFYERHPNVSL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++  +      D  +   + +  S L+ R LV       A+P YL     P+   
Sbjct: 134 DLCFKSQTANPIEGGFDLVVHSGR-LADSLLVNRILVRGAQKTVASPDYLARHGRPMVPS 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN I     +      +++                  +S   + +  V G GI+  
Sbjct: 193 DLVHHNCI-----VGAFGPAWHFRDEAGHEEIVRVSGKFVTDSGDILREAAVQGLGISQA 247

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             ++ +++     LV ++E+    +  +   +P   +   K++ F +F+ 
Sbjct: 248 TWWLFREDMQRGRLVPVLEEYEVEADPISIVFPANRRVPAKVRVFVDFLL 297


>gi|332534279|ref|ZP_08410123.1| transcriptional regulator, LysR family, in formaldehyde
           detoxification operon [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036275|gb|EGI72747.1| transcriptional regulator, LysR family, in formaldehyde
           detoxification operon [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 317

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 126/290 (43%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  V   GSFT AA+ L LS + ISR ++ LE  +  +L  R  R + LT++G 
Sbjct: 31  WDGIDEFIAVGEEGSFTAAAKMLGLSVAHISRHVTALEQRLNTQLLTRTTRKVVLTKEGE 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + H ++     L +    P GK+++   +  G++ +   +  F+   P++++
Sbjct: 91  VYLHQIKHLQHAMDEATQGLAQQQSTPKGKIKLTAPVMYGESFIMPIVHNFMKDQPEVEV 150

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+  ++     D AIRL   ++ SSL  R+L        AAP YL    EP ++ 
Sbjct: 151 VATLSNEQENLLEGGFDLAIRLGH-LKDSSLKARRLSARRFIMCAAPQYLTRFGEPHTLG 209

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL+ H  +       +  E+        R         LQ NS  +++     G GI  L
Sbjct: 210 ELNSHECLIGNSSYWRVNEN-------GRDKHIKIAGRLQCNSGWALVDGAKKGLGIVQL 262

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           PDY ++   ++  LV I+         V+  YP        ++   +++ 
Sbjct: 263 PDYYIENEINSGQLVPILTPYQPQQEGVWGVYPPRQFVATNVRVLLDYLV 312


>gi|157148818|ref|YP_001456137.1| putative DNA-binding transcriptional regulator [Citrobacter koseri
           ATCC BAA-895]
 gi|157086023|gb|ABV15701.1| hypothetical protein CKO_04651 [Citrobacter koseri ATCC BAA-895]
          Length = 309

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLAQFGVPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  +++ ++   G+GIA +
Sbjct: 183 DLSNHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLSRWLTAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +++ +  + +L  ++    +    VY  Y E  K   K++   N++
Sbjct: 240 PLMWVINEINSGDLEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINYL 288


>gi|78066999|ref|YP_369768.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967744|gb|ABB09124.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 324

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L  
Sbjct: 121 RYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L     +    +  + +  FN +A             L     ++I +  +
Sbjct: 181 NAPPLVPDDLSGFETLDTPSVDGRHV--FNLIAPDGTRHVHEHDPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|254237054|ref|ZP_04930377.1| hypothetical protein PACG_03086 [Pseudomonas aeruginosa C3719]
 gi|126168985|gb|EAZ54496.1| hypothetical protein PACG_03086 [Pseudomonas aeruginosa C3719]
          Length = 307

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 141/295 (47%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R L LT 
Sbjct: 1   MDRFDAMQAFARVVDTGSFTKAAETLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  +L+  +  L  +++ P G+LRI     L + LL   L EF   YP+
Sbjct: 61  DGAAYYERVVRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ +D+  +  DC IR    ++  SL+ R++  + +  YAAP YL+    P 
Sbjct: 121 IQIDLGVSDRLVDLIDENVDCVIR-GGELRDQSLMARRVGDLQLGVYAAPAYLQRAGVPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
             +EL+  +    G L  +  +   +        +       L V+   + +   + G G
Sbjct: 180 HPRELEDSHQRIVGFLWARTGKALPYAMRRGGECLRVAGRHVLAVDDGNAYLAAGLAGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP Y+ ++      L+ + ED       +Y  +P     +GKL+ F  ++  
Sbjct: 240 ILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWVAE 294


>gi|325168451|ref|YP_004280241.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064174|gb|ADY67863.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 299

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 15/299 (5%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD   L    VF  V  +G+F  AA+ L L+ S +SR ++ LE  VG++LF R  R +
Sbjct: 1   MTFDTRLLTGVGVFGAVMEAGNFVRAADVLGLTPSGVSRAVARLEQRVGVRLFDRSPRKV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLTE+G++ H     +   LE    E   S+    G++R++      + LL   + EFL 
Sbjct: 61  TLTEEGARFHARIMPLLAGLEEAASEAAGSAAFVGGRIRVSIDPWFARMLLAPRIGEFLA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP + + L   N   ++ M  AD A+R   P   SSLI RKL+ + +   AAP YL   
Sbjct: 121 LYPALTLDLTTSNYREEM-MSGADVAVRFGPP-DESSLIARKLLDVPVLTCAAPGYLDRY 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCV 236
             P++  +L +H+ I F D  P+    F W    D    E ++   L ++   + +  C+
Sbjct: 179 GVPVTPHDLMRHDCILFRD--PQTGRPFTWEFQGDNGAIEIKVAGRLVMDDPSAAVAACL 236

Query: 237 LGSGI----AL-LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI    A+ L +++  ++  L  I+ +     F +Y  +P       K++AF +F+
Sbjct: 237 AGQGIFQSFAIGLDEWL--ESGALTTILTEWSGERFPLYAYHPSRHMPPAKVRAFLDFV 293


>gi|262280820|ref|ZP_06058603.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262257720|gb|EEY76455.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 298

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 132/294 (44%), Gaps = 10/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +  +F  VA+  SF+  A QL L +S+++  I  LET   ++LF+R  R ++LT+
Sbjct: 1   MDRLQQFFIFTEVAKRQSFSEVANQLDLPRSTVTSAIQQLETHYCVRLFHRTTRKVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    E  +  +Q       G L+++    +   ++   L +F   YPD
Sbjct: 61  DGQRILPECQNLLFDYEQLEQLIQAQKQHYRGTLKVSMPSRIVHQVIIPELPDFYSRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL   +   D+     DC +R+ + + +SSLI + +  + M   A+P YL++   P 
Sbjct: 121 IHLQLNSSDDITDLIEKGIDCVVRVGQ-LDNSSLIAKFVGNLIMVNCASPDYLEHYGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L +H LI +   + +    F +     +       S L VN+  + +     G GI
Sbjct: 180 QLEDLSQHKLINYAGAVGEKQGVFLY-----QDGTVMMDSALSVNNTEAYIAAACAGLGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             LP Y V+   +   LV ++      S  +   YP       +L+ F  ++  
Sbjct: 235 IQLPYYDVQEKIEQGTLVEVLSAHTPQSLPLNILYPNRSYIPKRLEIFMEWVKE 288


>gi|242241012|ref|YP_002989193.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242133069|gb|ACS87371.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 298

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 137/297 (46%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++++ F  V   GS T AA QL  + S ISR I  LE ++G+ L +R  R L+L+
Sbjct: 1   MKITLEEMQAFIAVVDCGSVTAAAGQLGQTASGISRAIGRLEGKLGVTLLHRTTRRLSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        +V   +E  + ++     +PSG+LRI       Q+++   + EF   YP
Sbjct: 61  EEGQIFLLQARDVIQSVEAAEEQMALRREQPSGRLRINAASSFMQHVIVPLIPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+   + D AIR+   ++ SS+  R L    +   A+P YL+    P
Sbjct: 121 QIMLELNTDDVFIDLLEQHTDVAIRIGA-LRDSSIHARLLGCTRLRVLASPDYLRRRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L +++L  H L+ F       +    W    +     P    +  ++   +    + G G
Sbjct: 180 LRVEDLANHTLMGFTQSESLNL----WPLRSEMGDYYPIQPAVAASNGEMLRLLALHGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA L D++ +++     LV+I+ +        V   Y       G++ +F +F+  K
Sbjct: 236 IARLSDFMTREDVAAGLLVQILPEDTLDVRLPVNAVYYRNTALAGRIVSFLDFLSEK 292


>gi|172061440|ref|YP_001809092.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993957|gb|ACB64876.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 300

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 144/300 (48%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD   L    V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++   S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEEAAVDAGRSRARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P++ +++ + ++  D+  D  D A+R   P + SS   R L+  H+   A+P Y+   
Sbjct: 121 RFPELSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETHVLTCASPAYVARH 179

Query: 178 REPLSIQELDK-HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYC 235
            EP   ++L   H  +   D  P     + W     D  +       L VN   +++  C
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYGWEFHRGDEVVVFDATGRLTVNDTGALLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V G G+A L +   +D   +  LV+++ +    +F +Y  +  +   + K++ F +F+  
Sbjct: 238 VGGEGVAQLLELYARDILADGRLVQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFVRE 297


>gi|167578829|ref|ZP_02371703.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 328

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 8   MTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKL 67

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 68  ALTEAGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTLSQTMLSRLLPEFLR 127

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            +P++++Q+ + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L+ 
Sbjct: 128 RFPEVRVQIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLQQ 187

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L + +  T           FN +A             L     ++I +  +
Sbjct: 188 NAPPLVPDDLSRFD--TLDTPSGDGRHVFNLIAPDGTRHAHEHEPRLVTADLMTIREAVL 245

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 246 DGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 305

Query: 294 A 294
            
Sbjct: 306 L 306


>gi|325520600|gb|EGC99670.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 303

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 130/299 (43%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VAR GSFT AAEQL L + ++S  +  LE  + ++L  R  R + LT 
Sbjct: 1   MDHLHAMRIFARVARLGSFTKAAEQLQLPRPTVSNAVQYLEKHLKVRLLQRTTRRVGLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   L+  +   +E+   P G +R+          +   L  F   +PD
Sbjct: 61  EGATYYERCERLLADLDDAETLFEEAGASPRGVIRVDLPERFALTRVIPALPAFHARFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++ +D+  D  DCA+R+   +  +SL+ R++  +     A+P YL     P 
Sbjct: 121 LRVVMSTTDRFVDLVADGIDCAVRVGA-LSDTSLVARRVGEMAQINCASPAYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           S  +L  H  + +         D+ +       +   ++   + V+S  + +  CV G G
Sbjct: 180 SPDDLPDHVAVGYFSSRTGRELDWEYADMDSGELHTVKMRSVVSVSSSHAYLACCVAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   P   +     + +LV ++ +       V   +P       +++ F +++     D
Sbjct: 240 LIQAPRDGLAPLLADGSLVEVLPEWNAAPLPVSVVFPYGRHLAPRVRIFVDWLAETLGD 298


>gi|227356565|ref|ZP_03840952.1| LysR family transcriptional regulator [Proteus mirabilis ATCC
           29906]
 gi|227163321|gb|EEI48248.1| LysR family transcriptional regulator [Proteus mirabilis ATCC
           29906]
          Length = 301

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 129/302 (42%), Gaps = 6/302 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  F  V   G F+ AAE L + +S +SR+I+ LE  + + L YR  R   +T
Sbjct: 1   MKYDLNDLYYFVKVVEFGGFSQAAETLGIPKSKLSRRIADLEERLKVSLIYRSTRQFHVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   ++    V  + E  Q  +  +   P G ++++  + L Q  +Q  L +F+  YP
Sbjct: 61  KIGQTFYQQCKNVVEQAEIAQEVICSAQGHPHGTIKLSCPVALLQIYIQDILVDFMAKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI IQ++  N+ +D+  +  D A+R+R  P+  S L  + L        A P        
Sbjct: 121 DINIQILAINRPVDVINEGLDLALRVRALPLDDSGLTMKILGYSRRVLVANPLLFATNSA 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S ++L  + ++   +   +                +     L     +++ +  + G 
Sbjct: 181 PDSPEQLADYPILANSEHSQQYT--LTLTHNDGTVSTQHVTPKLATTDVMTLYKATLKGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  LP  +V+    + +LV ++     P   ++  YP        ++   +++      
Sbjct: 239 GITRLPLSVVEKELTDGSLVEVLPQWRFPKDVIHAVYPSRKGLLPAIQVLLDYLAQNMAP 298

Query: 297 WK 298
           +K
Sbjct: 299 YK 300


>gi|197251294|ref|YP_002148535.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197214997|gb|ACH52394.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 300

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 7   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 67  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 127 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +          F +    D          L VNS  +    C+ G GI   P 
Sbjct: 186 ASHAVVHYSLTPGVSSPGFAFETPHDMQ-WVKTGGMLTVNSTETWHTACLAGLGIIQTPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         V   YP     + ++  F  ++    ++
Sbjct: 245 IAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKE 297


>gi|33598291|ref|NP_885934.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33566849|emb|CAE39064.1| LysR-family transcriptional regulator [Bordetella parapertussis]
          Length = 307

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 137/295 (46%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ A+  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLYYFAQVVEQGGFSAASRVLDIPKSRLSRRISQLEDRLGVRLLQRTTRRLRLTTAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+       +  +++   +P+G + ++  + + Q +L   L EFL  +P + 
Sbjct: 63  ERYLHYCQEMTASARAAEDAMRQLQSEPAGPVVVSCPVSIAQQMLAPLLPEFLDAWPSVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++ N+ +D+  +  D A+R+R  +   + L+ + L        A+P YL+    P +
Sbjct: 123 VQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHLGIASGTLVASPAYLQRHGTPET 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QEL  H  ++F D  P+    +         +       L  N ++ + Q  V G GIA
Sbjct: 183 PQELASHRTLSFND--PQNEVRWPLTNQRGESVDVAVQPVLASNDFIVLTQAAVRGRGIA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP    +       LVR++ D  +P   V+  YP        ++AF +F+  + 
Sbjct: 241 LLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYPSRRGMMPAVRAFLDFLAKRV 295


>gi|254240252|ref|ZP_04933574.1| hypothetical protein PA2G_00895 [Pseudomonas aeruginosa 2192]
 gi|126193630|gb|EAZ57693.1| hypothetical protein PA2G_00895 [Pseudomonas aeruginosa 2192]
          Length = 295

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L+ F  V  SGS + AAEQ+ L+ S++SR +S LE ++G  L  R  R + LT
Sbjct: 1   MKANSDELQSFVSVVDSGSISAAAEQMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++  ++E  +  L      P+G+LRI        + +  ++ EF  LYP
Sbjct: 61  EEGRYFLDQARQILQQMEALEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ++L  ++  ID+     D AIR+   +  S+L  R L    +H  A+P YL     P
Sbjct: 121 NIQLELNTNDLIIDLLEQRTDVAIRIGA-LSDSTLHARPLGASRLHILASPEYLARHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            SI+ L  H L+ F    P+ +  +  + A  DR   +P IS    +S  ++ Q  +   
Sbjct: 180 TSIEGLRGHTLLGFTQ--PEHLNRWPVVHADGDRLEIQPDISA---SSGETLRQLVLSHQ 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIA L  ++      +  LV +  + ++     ++  Y    +   +++ F +FI  + 
Sbjct: 235 GIACLASFMTDRDIQDGRLVPLFAEQMSEYRQPIHAVYYRNSQLALRIQCFLDFIQQRL 293


>gi|53719583|ref|YP_108569.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|126440010|ref|YP_001058720.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|167816110|ref|ZP_02447790.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167902994|ref|ZP_02490199.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167911234|ref|ZP_02498325.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|217423812|ref|ZP_03455313.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|254197791|ref|ZP_04904213.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|52209997|emb|CAH35970.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|126219503|gb|ABN83009.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|169654532|gb|EDS87225.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|217393670|gb|EEC33691.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 313

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 129/296 (43%), Gaps = 5/296 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP+
Sbjct: 61  AGERYLQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++    P 
Sbjct: 121 VQVDLTLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEQHGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +          +++  +               +VN   ++      G GI
Sbjct: 181 RPQDLAGHVCLGMV-APGLYWDEWKLVGPQGEQSVTLAPPPFRVNVAEALATGIREGMGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP Y       N + VR+M +  +    +Y  Y        K++ + +F+  + 
Sbjct: 240 GVLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALYASRQYLDAKIRTWVDFLRDEL 295


>gi|296388289|ref|ZP_06877764.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313108540|ref|ZP_07794541.1| putative LysR-family transcriptional regulator [Pseudomonas
           aeruginosa 39016]
 gi|310881043|gb|EFQ39637.1| putative LysR-family transcriptional regulator [Pseudomonas
           aeruginosa 39016]
          Length = 317

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +GSFT AA+ L L ++ +S+++S LE  +G++L  R  R L+LT 
Sbjct: 1   MDKLTAMATFVKVVDAGSFTRAADALGLPKARVSQRVSDLEKHLGVRLLNRTTRALSLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS        +  +++  +  L+  +  P G+LR+ + I + + ++   L +F   YP 
Sbjct: 61  DGSAYFDKCQVLLQQIDELEATLRGGTATPIGRLRVDSLITIARWVIAPRLHDFQARYPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ++L   ++  ++  D  DC IR    ++ SS+I R L  I M  YA+P YL +     
Sbjct: 121 IQLRLSSSDRISNLLEDGIDCTIR-GGALKDSSMIARHLCDIQMGLYASPEYLASIGGVD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           S  +L +   +++     +    F W           +    +Q +     +  CV GSG
Sbjct: 180 SPDDLSQFRRLSW--FSGRERNPFMWELESGSERFVVQSGDGMQFDEPDVAISACVAGSG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I     + V        LV ++      +  V+  YP +   + +++ F N++  
Sbjct: 238 ICPGAPFAVAGFVRAGKLVPVLPQWHFSAAPVHVIYPGSRHLSVRVRCFVNWVME 292


>gi|218889824|ref|YP_002438688.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218770047|emb|CAW25809.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 317

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 136/298 (45%), Gaps = 13/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +GSFT A++QL+ + + +SR ++ LET +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+GKL++ +   +GQ+ +   +  +   Y D
Sbjct: 61  AGQRYLLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + N+  D+  +  D AI +   +  S  I +++   +    A+P YL+    P 
Sbjct: 121 VTFDLTMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPS 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVL 237
              EL  H+ +    L+   +    WL   D P G+  +S      QVN   ++ +    
Sbjct: 181 EPSELASHDCL---RLVSPVVPLDRWLF--DGPNGQEMVSIGASPFQVNVGDAMTEAIRS 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI +LP Y   ++     LVR++         VY  YP       K+K +  ++  
Sbjct: 236 GLGIGILPVYSAIEDLGKGTLVRVLPQHRLQQLNVYALYPSRQYLDAKIKTWVEYLKE 293


>gi|197123749|ref|YP_002135700.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173598|gb|ACG74571.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 313

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 5/292 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + +R F  VA   SFT AA+ L +S+S +S ++  LE E+G  L  R  R + L+
Sbjct: 1   MAMDLETVRAFVKVAELTSFTQAADHLGVSKSRVSLRVRALEDELGTHLLQRTTRAVRLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +       +    E      Q       G LR+   I+  +  +   L EFL  +P
Sbjct: 61  PDGERFLARARRLLADAEEVAGMFQA-PRALRGTLRVDLPINFARQHVIPRLPEFLAAHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++QL   ++ +D+  D  DC +R+   +  S L+ R+L  + M   A+P YL     P
Sbjct: 120 HLEVQLSTTDRRVDVVRDGFDCVLRIGA-LADSGLVARRLGVLRMVNCASPAYLLRHGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +LD+H L+ +          F +    DR    P  + + VN+  + +  C+ G G
Sbjct: 179 RDLADLDRHVLVHYSGRFGADAPGFEYRDG-DRYKERPMRAVVTVNAADAYLAACIAGLG 237

Query: 241 IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   P   +       LV I+         V   +        +++AF  ++
Sbjct: 238 IIQAPRIGMASLAEGTLVEILPAFTCAPMPVSLVHAHGGNVPQRVRAFMTWL 289


>gi|270263665|ref|ZP_06191934.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042549|gb|EFA15644.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 297

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 128/296 (43%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L     F  V   GSFT  A  L  + S +SR +S LET +G +L +R  R L
Sbjct: 1   MSRKFDYLGDVEAFIAVIEKGSFTAGAVALSTTASVLSRAVSRLETRLGRQLLHRTTRHL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G          + +L+    E+Q    + +G++RI+     G   L   L  F  
Sbjct: 61  GLTEAGRLYLEQARSAFQQLDDAGREIQGLEGELTGRVRISVPTTYGHYRLPPLLARFAQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP ++++L + N+++D+  +  D AIRL   +  S L+ RKL    +   A+P YL   
Sbjct: 121 QYPQVRVELNITNRNVDLVAEGFDLAIRLGD-LPDSGLVARKLEDAALLLVASPGYLNRA 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P +++EL++H  + F       +  + +          P  S    +  L ++     
Sbjct: 180 GTPKTLEELERHMCLPFVMPRTGRLAPWVFRDGERDVDWLPSSSIEISDDVLGVVSLAEQ 239

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI    ++IV D   N  LV I+  +   S      Y    + +   +A    +
Sbjct: 240 GIGICQSYEFIVHDRMENGRLVEILPHLRGRSRPFSVVYAPHRRQSPATRAMIELL 295


>gi|227113195|ref|ZP_03826851.1| hypothetical protein PcarbP_09540 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 293

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V    S T AAE+L +S++ ++R ++ LE+ +G +L +R  R   LT  G    
Sbjct: 1   MKVFVTVVTHKSQTAAAERLDMSRAMVTRYLAELESWLGARLMHRTTRRFGLTPTGEACL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               EV +++E  + E +    +P+G LRI  +  L Q  L   L  ++  YP ++I LI
Sbjct: 61  LQCKEVLNRIELLEAESKVDETEPNGLLRITASSWLWQTHLSSALTAYMARYPAVKIDLI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +++  D  D AIR+   ++   LI +K  T H    A+  YL     P    +L 
Sbjct: 121 LGEQRLNLVEDSIDLAIRITSDLE-PGLIAKKFATCHTVICASAAYLTRNGTPEHPSDLT 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            HN +T           F W       +   P    L  N    +M   + G GIA LP 
Sbjct: 180 AHNCLTHVYST-----KFEWQFRHQNELYSVPISGSLSTNEGNVLMDVALQGMGIAKLPL 234

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+     +N +L+ ++ D  +    +Y  Y      +  L+A  +F+
Sbjct: 235 YLAAPHLENGSLIHLLPDYKSHEMGIYGVYTSRQFMSKALRALLDFL 281


>gi|162456631|ref|YP_001618998.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161167213|emb|CAN98518.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 343

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 137/294 (46%), Gaps = 13/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D++ +F  V + GSFT AA  + + +S++SR+IS LE+ VG +L  R  R L+LT+ G 
Sbjct: 47  LDEIVLFTRVVQGGSFTAAATAVGMPKSTVSRKISDLESRVGARLLQRTTRTLSLTDVGR 106

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   LE  ++ + +    P G LR+   +    ++L   + E+L L+PD+Q+
Sbjct: 107 VYYEHCVRIVAALEEAELAVSQLQSTPRGLLRVTAPLAF--SVLGPIVAEYLRLFPDVQV 164

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+  ++ +D+  +  D A+R       +SL+ R+L  +     AAP   +   EP  I 
Sbjct: 165 DLVCTDRRVDVVEERFDLALRAGA-TPDTSLVARRLGAVRRRLVAAPEVKRALGEPNDIA 223

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  I F        E  +W       I E  +   L VN Y  +      G G+AL
Sbjct: 224 ELADHPCIVFAP------EGSSWELRSGPKIAEITVHPRLVVNDYEMLRSVARAGFGVAL 277

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP+Y+  ++     L+ ++     P   V+  YP     + K+    + +  + 
Sbjct: 278 LPEYLCAEDLAAGRLMPVLASWSAPEVPVFALYPSTRHLSPKVVTLLDLLRQRL 331


>gi|319795068|ref|YP_004156708.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597531|gb|ADU38597.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 339

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 145/292 (49%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++ F  VA   SF+ AA+ L +S++++SR ++ LET  G++L  R  R L+LT+
Sbjct: 1   MDGLDLIKTFREVAFRRSFSRAADSLGMSKATVSRYVAELETRSGVRLLNRSTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L   ++E+    E T  +LQ     P G+LR++    +    L   +  F+ LYPD
Sbjct: 61  AGQVLLDRSTELVAMAENTLNDLQAHGSHPRGRLRMSAPNGMIAGWLSDVMAAFINLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+  N+DID+  +  D  +     I   +LI R+LV   M   A+P Y      P 
Sbjct: 121 VYVSLVFTNRDIDLIEEGIDIHL-TGGRIDDMNLIVRRLVQYDMVVCASPAYWARRGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +++ +H+++++  +    +       T  RP      S ++ N  +++++  + G G+
Sbjct: 180 VPEDVGRHDILSYASMPTTHLP----FETDGRPHEVAVHSRMEANDAMALIELALRGVGV 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +P+ + +   +   LV ++ + +     +Y  Y +   N+  ++A  +F+
Sbjct: 236 AYVPEPLAQSHLERGALVPVLREHMPRDHWLYAAYSQRRHNSAAMRAMLDFL 287


>gi|238910365|ref|ZP_04654202.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 299

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 6   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 66  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 126 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 185 ASHAVVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         +   YP     + ++  F  ++    ++
Sbjct: 244 IAVREALRAGTLIEILPQYRAAPLPMTLHYPHRRNLSRRVHLFMVWLTETIKE 296


>gi|260553874|ref|ZP_05826142.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260404994|gb|EEW98496.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 300

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 143/300 (47%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT
Sbjct: 1   MKSTIEELIAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLIERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YP
Sbjct: 61  QEGQQFLTKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFREYYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+I+L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P
Sbjct: 121 DIEIELNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLYIVASPDYLALKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL +H+LI F    P  +  +      +    +  I   + +S  ++ Q  + G G
Sbjct: 180 TQPEELKQHDLIGFTR--PTYINSWPIKIGDEYFFAQANI---KASSGETVRQLTIRGHG 234

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ +    +   L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDQIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|33603201|ref|NP_890761.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33568832|emb|CAE34590.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 307

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 137/295 (46%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ A+  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLYYFAQVVEQGGFSAASRVLDVPKSRLSRRISQLEDRLGVRLLQRTTRRLRLTTAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+       +  +++   +P+G + ++  + + Q +L   L EFL  +P + 
Sbjct: 63  ERYLHYCQEMTASARAAEDAMRQLQSEPAGPVVVSCPVSIAQQMLAPLLPEFLDAWPSVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++ N+ +D+  +  D A+R+R  +   + L+ + L        A+P YL+    P +
Sbjct: 123 VQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHLGIASGTLVASPAYLQRHGTPET 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QEL  H  ++F D  P+    +         +       L  N ++ + Q  V G GIA
Sbjct: 183 PQELASHRTLSFND--PQNEVRWPLTNQRGESVEVAVQPVLASNDFIVLTQAAVRGRGIA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP    +       LVR++ D  +P   V+  YP        ++AF +F+  + 
Sbjct: 241 LLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYPSRRGMMPAVRAFLDFLAKRV 295


>gi|299768287|ref|YP_003730313.1| transcriptional regulator, LysR family protein [Acinetobacter sp.
           DR1]
 gi|298698375|gb|ADI88940.1| transcriptional regulator, LysR family protein [Acinetobacter sp.
           DR1]
          Length = 300

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 143/300 (47%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT
Sbjct: 1   MKSTIEELVAFIAIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ ++L   + ELQ+S    +G +RI +      +++   + +F   YP
Sbjct: 61  QEGQQFLVKARKILNELNAAEEELQKSDQGTAGLIRIDSATPFVLHVIAPLMHKFRECYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+I+L  +++ ID+     D A R  + +  SSL  + +    +   A+P YL     P
Sbjct: 121 NIEIELNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLFIVASPEYLAIKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L++HNLI F    P  +  +      +    +  I   + +S  ++ Q  + G G
Sbjct: 180 TQPEQLEQHNLIGFTR--PAYINSWPIKVGDEYFFAQANI---KASSGETVRQLTIRGHG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ V  +     L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEVWKDIQEGRLIALFEDQIEHQYQSIHAVYYQQEHLPKRIRLFIEFLVEQLKD 294


>gi|190891440|ref|YP_001977982.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190696719|gb|ACE90804.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 290

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 138/293 (47%), Gaps = 12/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + +R F  VA +G  T AA++L +S+S +SR+I+ LE E+G +L  R  RG+ LTE+
Sbjct: 1   MEIEDIRTFVEVADAGGVTPAAQRLGISKSMVSRRIARLEAELGAQLLSRTTRGIALTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      + +  +++  +  +  +  +  G+LR+A  +  G       L +    +P +
Sbjct: 61  GATFRDYAARISAEIDAARETILPA-GELRGRLRVAAPLSFGPTHFAPVLAQMARRHPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +     ++ +D+  +  DCAIR+   +  S+L+ R++  ++    A+P Y+     P +
Sbjct: 120 HVYSCYTDRFVDLITEGFDCAIRVGY-LPDSNLVARRVGPLYGKFVASPAYVAANGAPET 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H  +  G  + +       +A  D+ +        + ++ ++++   + G GIA
Sbjct: 179 PDELLNHQALMQGTEVWQ-------VADGDQVLNIRPQGRFKADNGVALLAAALEGIGIA 231

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD +   +     LV +M     P+  ++   P A   + K++     +  
Sbjct: 232 RLPDGLTDQHIATGTLVEVMTRYPPPTAGIFVVRPPAQHPSRKVRVLTEMLIE 284


>gi|170702369|ref|ZP_02893261.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|172061162|ref|YP_001808814.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|170132728|gb|EDT01164.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|171993679|gb|ACB64598.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 325

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L  
Sbjct: 121 RYPEVKVHIRVTNRVIDLFEDSVDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L +   +    +  + +  FN +A             L     ++I +  +
Sbjct: 181 NAPPLVPDDLARFETLDTPSVDGRHV--FNLIAPDGTRHLHEHDPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|238894943|ref|YP_002919677.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|329999705|ref|ZP_08303480.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|238547259|dbj|BAH63610.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328538236|gb|EGF64382.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 295

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 130/283 (45%), Gaps = 6/283 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F VVAR  SFT AA QL +SQS++S  +  LET + ++L  R  R +  TE G
Sbjct: 5   NVNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRHLETRLDVRLLTRTTRSVVPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +       ++E     L+++  +P+G LRI         +L   LK F+L YPDI 
Sbjct: 65  ERLIQRLGPHLEEIEQALAALRDTRERPAGNLRITAGEHAASAVLWPALKPFMLQYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ +DN   DI  D  D  +RL + +    +  R    + M    +P YL+    P + 
Sbjct: 125 IEITVDNGLTDIVGDRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSPAYLQRAGTPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  I     +P     + W    D    + R+   L +NS    +     G G+A
Sbjct: 185 WDLAQHRCINL--RLPTRGGLYAWEFARDGREIQVRVEGQLILNSLPQRIDAAEAGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
            +PD  V +   +  LVR++ +        +  YP   ++T  
Sbjct: 243 YVPDDCVAEALASGRLVRVLAEWTPAFPGYHLYYPSRRQHTSA 285


>gi|197335704|ref|YP_002155894.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197317194|gb|ACH66641.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 311

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 138/291 (47%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +FY +A++GSFT AA+Q+ +S S +S+Q+  LE  + +KL +R  R LTLT+ G + 
Sbjct: 7   QMVIFYALAKAGSFTAAAKQMGVSTSHVSKQLGALEETINVKLVHRTTRSLTLTDAGQQF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++Y  +      + +   + +G LR+  +   G   +   + +    YPD+Q+++
Sbjct: 67  FLYCEKIYSAMTEASAIMDDERDEVTGILRLGLSQSFGTMHIIPAIDKLRHQYPDLQVEV 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+  D  D  +   + +     + ++L   +    A+P YL + + P    +L
Sbjct: 127 RLFDHRADMLKDGLDLWVTNFEDLP-EGYVAQRLADSNFVLAASPDYLIDKKVPHHPLDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN +T+     +  +  +W  +        ++S   +V+   ++    + G GIA L 
Sbjct: 186 VEHNCLTYQS---RHRDYSHWDFSKGNEALCVKVSGNYRVDLAEAVRDAAISGWGIAYLA 242

Query: 246 DYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            Y++ D   +  L++++ D   +    +Y  YP       K+ A  +F+  
Sbjct: 243 SYLLTDEFNDGKLIQLLPDWKASQKMPIYAVYPSRKHLPRKISAVIDFLRE 293


>gi|222082091|ref|YP_002541456.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726770|gb|ACM29859.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 292

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 121/291 (41%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++V   VA  GSF  AA QLH+S   ++R I+ LE   G +LF R  R + LT QG    
Sbjct: 1   MKVLVKVADVGSFAAAARQLHMSPPVVTRAIAFLEEVTGARLFLRSTRSVKLTAQGRHYV 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +     S   PSG L +   +  GQ  +   +  FL L+P +  +++
Sbjct: 61  EDCRRILSDIDEAEASAGGSYATPSGMLTVTAPVLFGQYYIMPIVTAFLALHPAVIGRVL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +++  +  D AIR+   +  SS    K+ T+      AP Y +    P +  +L 
Sbjct: 121 LFDRIVNLVEEGIDVAIRIGH-LPDSSYNAVKVGTVRRVVCGAPSYFECHGLPETPADLV 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H +I             +W    +  +       L  NS  + +     G G+A    Y
Sbjct: 180 GHTIIA----NTGSSAPLDWHFCPEGKLSPALHPRLFCNSVEASISAASSGWGLARTLSY 235

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +        L  I+ED       ++  +PE    + K +AF +F   + R
Sbjct: 236 QIAKPVAEGRLRVILEDFEEEPLPIHVVHPEGRHASAKTRAFVDFAVEQLR 286


>gi|297181644|gb|ADI17827.1| transcriptional regulator [uncultured Rhodospirillales bacterium
           HF0200_01O14]
          Length = 301

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 116/291 (39%), Gaps = 5/291 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +   L  F  +   GSF  AA+QL ++ S++S +I  LE  + ++L  R  R +  T
Sbjct: 2   MNENISDLAAFCAIIELGSFRAAAKQLRVTPSALSHRIKNLEDSLQVRLLNRTTRSVAAT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L+   S    ++      L +    P+G LR+    +  + +L   +  F    P
Sbjct: 62  DAGRALYDRVSPAMREMSGALQSLDDYRSGPTGTLRLNVPANAARVVLAPAIAGFCRDNP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++++I ++  +DI     D  IR  + +       R   +I     A+P YLK    P
Sbjct: 122 NVRLEIIENDGFVDIVAGGFDAGIRFEETLAPGMSAIRLGPSIRPMVIASPDYLKRHGTP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++  +L  HN I    L P            +          L V+S   ++     G G
Sbjct: 182 MNPNDLANHNCINL--LFPGGKLAPWDFTDGENHFVLANNGNLTVSSTQMMLDAVRNGIG 239

Query: 241 IA---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           I            +   +V I+ D +      +  YP+       L+AF N
Sbjct: 240 IGQKLQGSADDAIERGEIVPILADWMPDYGQFWIYYPKRTYLPSALRAFIN 290


>gi|206576336|ref|YP_002238278.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288935265|ref|YP_003439324.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290509318|ref|ZP_06548689.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206565394|gb|ACI07170.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288889974|gb|ADC58292.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289778712|gb|EFD86709.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 295

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 6/283 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F VVAR  SFT AA QL +SQS++S  +  LE  + ++L  R  R +  TE G
Sbjct: 5   NVNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRHLEARLDVRLLTRTTRSVVPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +       ++E     L+++  +P+G LRI         +L   LK F+L YPDI 
Sbjct: 65  ERLIQRLGPHLEEMERALTALRDTRERPAGNLRITAGEHATSTVLWPALKPFMLQYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ +DN   DI     D  +RL + +    +  R    + M    +P YL+    P + 
Sbjct: 125 IEITVDNGLTDIVDGRFDAGVRLGEQVAKEMIAVRIAPDMRMAVVGSPAYLQQAGTPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  I     +P     + W    D    + R+   + +NS    +     G G+A
Sbjct: 185 WDLAQHRCINL--RLPTRGGLYAWEFARDGRDIQVRVEGQVILNSLPQRIDAAEAGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
            +PD  V +   +  LV+++ D        +  YP   ++T  
Sbjct: 243 YVPDDCVAEALASGRLVQVLADWTPTFPGYHLYYPSRRQHTSA 285


>gi|260779236|ref|ZP_05888128.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605400|gb|EEX31695.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 315

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 123/291 (42%), Gaps = 7/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  +    +FT AA+ L +S S +S+Q++ LE  +G+KL  R  R  T TE G + 
Sbjct: 8   QMVVFAALLTHKNFTQAAKSLGVSVSHVSKQLALLEESLGVKLVQRTTRTFTPTEAGEQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +V   +E   +E++    + +G +RI  +   G   +   + E  L +P++Q+++
Sbjct: 68  FYHCQKVVRSVEEAHLEVESQKDEVAGLIRIGLSQSFGTLHILPAIDELRLQHPNLQVEM 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + ++L        A+P YL N   P    +L
Sbjct: 128 HLFDYKVDMLQEGLDLWITNNEMLP-EGYVAQRLADSQFVVAASPEYLMNYDTPHHPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN + +              +  D  I         V+   ++    V G G+A L  
Sbjct: 187 VDHNCLIYRSWERDYTSWA--FSNRDDQINVKVSGNYSVDLAEAVRDAAVAGWGVAYLAT 244

Query: 247 YIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y+++D      L++++ + +       Y  YP       K  A   FI  K
Sbjct: 245 YLIRDEFKQGQLIQLLPEWLPSQNMPFYAVYPSRRYLPTKTTAVIEFIKKK 295


>gi|207858845|ref|YP_002245496.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206710648|emb|CAR35006.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 299

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 6   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 66  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 126 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 185 ASHAVVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         +   YP     + ++  F  ++    ++
Sbjct: 244 IAVREALRAGTLIEILPQYRAAPLPMTLHYPHRRNLSRRVHLFMVWLTESIKE 296


>gi|198246047|ref|YP_002217567.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197940563|gb|ACH77896.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326625349|gb|EGE31694.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 300

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 7   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 67  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 127 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 186 ASHAVVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         +   YP     + ++  F  ++    ++
Sbjct: 245 IAVREALRAGTLIEILPQYRAAPLPMTLHYPHRRNLSRRVHLFMVWLTESIKE 297


>gi|326317472|ref|YP_004235144.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374308|gb|ADX46577.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 311

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR++S LE ++G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVVERGGFAAAGRALGIPKSRLSRRVSDLEAQLGVRLLQRTTRKLSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    V    +     + E   +P G +R++  + L Q +L   +  FL  +P ++
Sbjct: 63  ESYLRHCQAVREAAQAASDAVAEVQTEPRGTVRVSCPVTLAQTVLGELMPIFLERHPQVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +D+  +  D A+R+R  +  S S++ ++L        A+P  L     P S
Sbjct: 123 VEMQVTNRAVDLVEEGVDVALRVRPNLDDSGSMVVKRLDDARQVLVASPALLARQGTPTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L + + +    +  +       +    +            +  L++    + G+G+ 
Sbjct: 183 VAGLARLDSMAMSAMDGRS--SLRLVGPEGQEEVVQLTPRYVADDLLTLKFAALAGTGLC 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY+ +       LVRI+    TP   V+  +P        ++ F +F+
Sbjct: 241 WLPDYMCQAELGEGRLVRILPGWSTPRGVVHAVFPSRRGLAPAVRRFLDFL 291


>gi|271501163|ref|YP_003334188.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344718|gb|ACZ77483.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 297

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 121/289 (41%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+    VF  VA  GSFT AA +L LSQS++S  +  LE  +  +L  R  R L+LT+ G
Sbjct: 5   DFSDFAVFIAVAEEGSFTRAAAKLGLSQSALSYTVRMLEQRLDTRLLSRTTRSLSLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       +  +      L     KP+G +RI T     + +L   L  FL  YPDI 
Sbjct: 65  ERLLHALKPAFEHINHEIAALSSQRGKPAGTIRITTFRHAARTVLLPALTPFLHDYPDIM 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ ++    DI     D  IR+ + +    +  +    I M    +  Y      P + 
Sbjct: 125 VEISVNEGLTDIVAGRFDAGIRMGEQVHKDMIAVKISPDIRMAVVGSASYFAARNTPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +EL +H  I++       +  + W    +    E R++  L +N    +    + G G+ 
Sbjct: 185 RELSEHRCISYRQSSGGGI--YAWEFEKEGDALEVRVNGPLIINDNEMLEDAALSGLGLV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
              +  V  +     L+R++ED   P    +  YP   ++T       +
Sbjct: 243 YTFESHVIQHITAGRLIRVLEDWCPPVSGYHLYYPSRKQHTPAFALLID 291


>gi|200390770|ref|ZP_03217381.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603215|gb|EDZ01761.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 321

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMITYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I     I R+L T      A+P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDIN-ELYIARQLATNRRILCASPEYLERHGKPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   K     NW+ T  +     R++     NS   ++ + + G GI L 
Sbjct: 200 LVQHDCLMIQE---KNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITLR 256

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    +   LVR++      +  ++  Y     ++ ++K   +F+  
Sbjct: 257 SEWDVAQYIERGELVRVLPQWYQEA-NIWAVYTRRSSSSDRIKICIDFLTE 306


>gi|134291777|ref|YP_001115546.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134966|gb|ABO59291.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 301

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 131/301 (43%), Gaps = 11/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  LF R  R +TL++
Sbjct: 1   MDKFSALRAFVEVAEAGGFSSAGRRLELAASSVVRAVDALEASLGTVLFNRTTRQVTLSD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  +L      + +   +PSG LR++  +  G   +  ++   L  +P 
Sbjct: 61  AGVVYYARAKRVLEELADADALVADRGSEPSGPLRVSVPVAYGLRRIAPHVAALLARHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+     D AIRL     S+ ++ R L T   H  A+P YL     P 
Sbjct: 121 LDIDLQLTDERVDLVTSRIDVAIRLGDAAPSADVVARPLGTFRRHVVASPGYLDAHGTPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + F   + +    F                 L+ N    + +  + G+GI
Sbjct: 181 TPGDLVDHACLRFHFGVDQQAWTF---VGAQGTTQVVVAGRLKSNHSEVLCEAALDGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD++V  +     L R+ +D           +   Y    + + ++ AF +F+   A
Sbjct: 238 ALLPDWLVDADVEAGRLRRLFDDYDVTPGAARAVITALYLPNQRGSKRVAAFIDFVAALA 297

Query: 295 R 295
           R
Sbjct: 298 R 298


>gi|300693925|ref|YP_003749898.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299075962|emb|CBJ35273.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 300

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 128/293 (43%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR GSFT AA +L ++QS++S+ +SGLE  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLAFVTVAREGSFTRAAARLGVTQSALSQTVSGLEARLKIRLLMRTTRSVSATAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +     + ++ET    L E   KP+G +RI     + + +L   L   L  YPDI+
Sbjct: 65  ERLVQAIGHRFDEIETELDALTELRDKPAGTVRITCGDQVLKTVLLPKLTPLLQAYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  ++    DI  D  D  +R    +    +  R  + + M   A+P Y      P + 
Sbjct: 125 LEFDINYGFRDIVADRFDAGVRFSNTVDKDMIAVRIGLDMRMAVVASPTYFAEHPAPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I         ++ +       R +       L +N+   I      G G+A 
Sbjct: 185 RDLVHHRCINIRFPTYGGLDVWE-FERRGRKLKIRVDGQLVLNTTPHIAAAAANGLGVAY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP+       +   LVR++ED   P    +  YP   + +       + + +K
Sbjct: 244 LPEDEFSPHIEEGRLVRVLEDWCPPFSGYHLYYPSRRQPSPAFSLVLDALRMK 296


>gi|167562974|ref|ZP_02355890.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 301

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 132/295 (44%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE  +G++L  R  R  TLTE+G
Sbjct: 5   DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLEARLGVRLLQRTTRQQTLTEEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H    ++  ++E  +  +++      G LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVKILAEIEQAETLMRDKRGTVGGALRITAPGELGRLRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDIDVAVRIGM-LADSSLIARELAPNYRVLGASPAYLAERGMPAHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P+     +    N   +   + + G+GIAL
Sbjct: 184 ADLCAHRCIVMGEQPR-----VEWRFDGPEPVAVEVSAAFLTNDGGAARTFALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V  +     L R++ +  + +  ++  YP       +++ F +++  + R
Sbjct: 239 KSIWDVGPDIAAGRLRRVLPECASSAAPLHAVYPSGRHLALRVRTFVDYLGAELR 293


>gi|308049730|ref|YP_003913296.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307631920|gb|ADN76222.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 303

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 133/294 (45%), Gaps = 8/294 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V    SF+ AA +  L  S++SRQ++ LE+  G +L  R  R ++LT 
Sbjct: 1   MDLVKAIRTFVNVVAHQSFSAAAREQGLVTSAVSRQVAELESHYGCQLLTRSTRTMSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G         +  +L+  ++   +   K SG +RI + +   Q  LQ +L  F+  YP+
Sbjct: 61  EGEYFLAEFKAILARLDQLELGAGDRRNKVSGLIRITSPLHSAQLSLQPSLSRFMAKYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +  +L N+ +++  +  D AIR+ + +  SSL+ R+  T+ +   A+P YL     P 
Sbjct: 121 VSLSWLLANRSVNLLEEGVDLAIRVGE-LPDSSLVARRFTTVAVVFVASPDYLARHGTPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  +   +  P+           +  I  P  + ++VN      Q+   G GI
Sbjct: 180 HPRALVQHRCLV-DNSNPQLARWRYQEGGREHQIRVP--ATVEVNEGDLAGQFAADGHGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A LP ++V+       LV I++        V   YP    N+  ++A    +  
Sbjct: 237 AQLPQFMVQQYLAEGRLVPILQAYALTPQPVSLVYPANRTNSVAVQALIEHLMA 290


>gi|146313314|ref|YP_001178388.1| putative DNA-binding transcriptional regulator [Enterobacter sp.
           638]
 gi|145320190|gb|ABP62337.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 308

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G   E L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGMTAEMLKEYPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L ++ M   A+ +YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGSMPMVVCASKNYLLQFGVPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +         +F  +A                N  ++I ++ V G+GIA +
Sbjct: 183 DLSNHSWLEYSVRPDS---EFELIAPEGLSTKLLPQGRFVTNDPMTISRWLVAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +++ +  +  L  +     +    VY  Y E  K   K++   N++
Sbjct: 240 PLMWVINEINSGELEILFPRYQSDPRPVYALYTEKDKLPLKVQVCINYL 288


>gi|157371370|ref|YP_001479359.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323134|gb|ABV42231.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 309

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 132/287 (45%), Gaps = 5/287 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F + A+S SFT AAEQL +++S++ + ++ LE  +G +LF+R  R L+LT  G       
Sbjct: 16  FVITAKSSSFTAAAEQLGITKSAVGKSVARLEERLGTRLFHRSTRKLSLTSDGEAYLTSC 75

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 L++ +  L      P+G +RI      G+NL+   L E +  YP +++ L  ++
Sbjct: 76  LSALEILDSAENTLSRRQENPTGTVRIDMPASFGRNLMMPVLIEMMTRYPALRLALTFND 135

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + ID   +  D  +RL +   +  LI R+L    +   A+P YL+    P  I++L  H 
Sbjct: 136 RLIDPVEEGVDLVLRLGELQSTDELIARRLSRQRLILCASPAYLERHGLPADIEDLKSHY 195

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            +            +      +R +     +  Q++   +++Q C+ G GIA  P+ +V 
Sbjct: 196 CVM--GYRRGAPLAWRLRKAGEREVKFISATAHQISDGDAMIQACLAGVGIAQFPESMVN 253

Query: 251 DN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +    +L+ +M D       +   +P       +++   + +  KA
Sbjct: 254 SHIAAGSLISLMADHAPIPVELNVIWPRTRHLIPRVRLIVDELLKKA 300


>gi|317054286|ref|YP_004118311.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952281|gb|ADU71755.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 306

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 122/286 (42%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF      GS   AA +L+LS     R ++ LE  + ++L  R    L LT+ G    
Sbjct: 7   MSVFVAAVEEGSIAAAARRLNLSPVMAGRYLTSLEEGLSVRLLERSTHQLNLTDAGGSYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   + E     + P G LRIA  +  G   L   +  F+  YP + IQL 
Sbjct: 67  VKAKRILSDIREAEQEATAKHISPQGSLRIAAPVTFGTQYLAPLIAAFMRDYPQVDIQLQ 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  +  D AIR+ + +  S L+ R++    + A A+P YL +   PL  +EL 
Sbjct: 127 LLDRFIDLVDEGVDLAIRIGQ-LPDSDLVARRITDYRLLACASPRYLADAGRPLLPEELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H LI +   +      + + A                N+   ++   +  +GI   P++
Sbjct: 186 RHVLIGYSGTM--TTSPWQFTAASGEVKQIEAHCRFLANNTAIMVALALQDAGIVYGPEF 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++ +     LV ++ D   P  +++     A     K + F  ++
Sbjct: 244 VMQPHLQTGELVEVLPDYRCPVISLFAVTLNAKYVNSKTRLFIQYL 289


>gi|84386215|ref|ZP_00989244.1| Transcriptional regulator [Vibrio splendidus 12B01]
 gi|84378985|gb|EAP95839.1| Transcriptional regulator [Vibrio splendidus 12B01]
          Length = 319

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 138/298 (46%), Gaps = 12/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +++F  V  SGSF+ AA+ L+++ SS++R I  LE+++   LF R  R L LTE+G 
Sbjct: 14  LDLIKIFDQVVESGSFSKAAQALNMAPSSVARNIDNLESKIKSSLFKRSTRQLILTEEGQ 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++ ++++     +   E+Q +   P G LR++     G   L   + EFL  YP IQ+
Sbjct: 74  YFYQKSAKILQDSNSLLEEMQGNQGIPEGLLRVSVFESFGNLCLTPLIPEFLERYPKIQV 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L LDN  +D++ +  D AIR+  P Q S L  R L+T +    AAP Y++        +
Sbjct: 134 ELELDNNVVDLNSENIDVAIRIGTP-QDSRLKARHLLTNNTSLVAAPSYIEKYGTIDKPE 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  HN +       +    F   A   + +       L       ++   + G G+ LL
Sbjct: 193 GLQDHNCLLISHERQRNYWYFKKSAVNKKVL---VTGNLISKGGSPLLHAALNGVGVLLL 249

Query: 245 PDYIVK---DNPNLVRIMEDVIT-----PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D+++K   +N  L  ++    +      S  ++  Y         ++ F NF+  K 
Sbjct: 250 SDWMLKPYLENGQLRELLPQWTSMHNEQGSGEIFAIYKNTQYPRPHIRLFINFLVEKL 307


>gi|309782093|ref|ZP_07676823.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308919159|gb|EFP64826.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 300

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 125/292 (42%), Gaps = 10/292 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS + AAE L +S++ ++R ++ +E   G +L +R  R + LT  G     
Sbjct: 8   EVFVAIVERGSLSAAAEALDMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTPAGEATLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++        +     +  P G LRIA    L Q  L   +  +L  YP   + L++
Sbjct: 68  RCRQMLEIASQMAVADGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQTAVDLVV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           DN+  ++  +  D A+R+   +   +LI R L        AAP YL     P  +Q+L  
Sbjct: 128 DNRTTNLVEERIDLAVRITNDL-DPNLIARPLGMCESVVVAAPSYLAAHGTPRRVQDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K +  F   A    P   P    L  N  + ++     G+GIAL P + 
Sbjct: 187 HNCLTYT-YFGKSLWKFT-EAKTGAPSDVPVGGNLSANESMVLLAAAREGAGIALQPVFA 244

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 +  LVR++ D +  +  ++  Y    +    L+A  +F+     DW
Sbjct: 245 AAPLIASGQLVRLLPDYLPQALGIHGVYSSRRQMPAALRAMLDFLV----DW 292


>gi|254707242|ref|ZP_05169070.1| transcriptional regulatory protein [Brucella pinnipedialis
           M163/99/10]
 gi|254709216|ref|ZP_05171027.1| transcriptional regulatory protein [Brucella pinnipedialis B2/94]
 gi|256030739|ref|ZP_05444353.1| transcriptional regulatory protein [Brucella pinnipedialis
           M292/94/1]
 gi|261314723|ref|ZP_05953920.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261316719|ref|ZP_05955916.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|265987790|ref|ZP_06100347.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|261295942|gb|EEX99438.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261303749|gb|EEY07246.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|264659987|gb|EEZ30248.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
          Length = 297

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G
Sbjct: 5   NLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI 
Sbjct: 65  ERLLAQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   
Sbjct: 125 IELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   E F W  +   + I       L   S   ++Q C+ G G+A
Sbjct: 185 QDLSDHDCINL--RLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP        ++  LV ++ D        +  YP   ++   L A    +
Sbjct: 243 YLPRDYAARHIESGALVEVLADWRKTFAGYHLYYPNRRQHPPALAALIEAL 293


>gi|83716147|ref|YP_439671.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83649972|gb|ABC34036.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 325

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 129/297 (43%), Gaps = 4/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V ++GSFT AA  L + ++++SR++  LE ++G++L +R  R L LT
Sbjct: 21  MAADPNDTLIFVRVVQAGSFTAAARLLRMPKTTVSRRVMTLEAQLGVQLLHRTTRRLGLT 80

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  +     +  +L+     + +    P G LR+      G   +   L  F   YP
Sbjct: 81  EAGSLYYSHCRNMAAQLDEAHAAVSQLQSGPRGWLRVTLPYSFGTTWIAPLLAGFRQAYP 140

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++++++  +  +D+  D  D A+RL   +  S L+ R+L +     YA+P YL     P
Sbjct: 141 DVRLEILASHVPLDLVADEIDIALRLG-VLADSDLVARRLGSFATGVYASPSYLMRHGVP 199

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  +T           +       R         +  +    I      G G
Sbjct: 200 EHPGELGAHRALTLHQARRAVGYAWPLRKPGGRAQYFALDPVIVASDPALIHDALCAGEG 259

Query: 241 IAL-LPDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + L +   +  D+    + R++ D   P+      +P     + K++AF +++  + 
Sbjct: 260 LTLAMHQSMAADHEAGRVRRVLSDWSGPAQDFNALFPRGRVASPKVRAFVDYLRDRL 316


>gi|126172470|ref|YP_001048619.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125995675|gb|ABN59750.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 337

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 141/288 (48%), Gaps = 10/288 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    + VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTL
Sbjct: 1   MNKNMIKGMIVFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE GS  +    +V   +E+T+ +L      PSG+L+IA  I  G  LL       L  +
Sbjct: 61  TEAGSLFYENCRKVIAIVESTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + L+L +  IDI  +  D AI +  P+  S+LI R L    M   A+P YL   + 
Sbjct: 121 PQISLNLLLQDGPIDIVNEGIDLAICIG-PLSDSNLIARHLADWRMLLCASPDYLPMHKI 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                EL   N I       + +         ++   E     + VN+  +++Q  + G 
Sbjct: 180 FKHPAELAAFNRINHPCANSETLTHVR-----NKECFELTSQRITVNNMQALIQLTLDGL 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G A LP+  V    ++  LV ++ +    +++VY       K   K+K
Sbjct: 235 GFAALPEPEVHKYLESGQLVTLLPEWSLNTYSVYSVTSARDKQPAKVK 282


>gi|163746544|ref|ZP_02153902.1| putative transcriptional regulator [Oceanibulbus indolifex HEL-45]
 gi|161380429|gb|EDQ04840.1| putative transcriptional regulator [Oceanibulbus indolifex HEL-45]
          Length = 302

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 131/300 (43%), Gaps = 13/300 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +  D++  F  V   G+ T  A +L+LS+S IS++IS LET +G  LF R+A  ++ T
Sbjct: 1   MKYTLDEIETFLAVMELGTITAVAARLNLSKSVISKRISDLETTLGAALFRRNAGRISPT 60

Query: 61  EQGSKLHRVTSEVYHKLETT---QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           E   +L         +L                  G L IA  +  G   L   +  F  
Sbjct: 61  EAAQRLDDRLRPALAELTAAAESAAWGGAGDDVLRGTLSIAAPMSFGTLHLSPIIARFAA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P +++++  D++  D+  D  D A+R+   ++ ++L+QRKL        A+P YL   
Sbjct: 121 QHPKLEMRIDYDDRARDLFRDGFDLAVRIGN-LRDTALMQRKLCEDETIPCASPAYLDRY 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P ++  L  H +I +  +    +  F      D        S L +N+  ++    + 
Sbjct: 180 GRPETLDHLGDHQVIGYQHMSNAQLWTF------DNSTPPALHSRLTLNNGEAMRDMAIE 233

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+A+LP ++         L RI+ +  T +  +   +P       KL+ F +++  + 
Sbjct: 234 GLGVAILPAFLAMAPIRKGKLERILPNAQTRNLPIVAVWPPVSPMPQKLRQFIDYLIAEL 293


>gi|153002620|ref|YP_001368301.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151367238|gb|ABS10238.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 337

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 141/288 (48%), Gaps = 10/288 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    + VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTL
Sbjct: 1   MNKNMIKGMIVFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE GS  +    +V   +E+T+ +L      PSG+L+IA  I  G  LL       L  +
Sbjct: 61  TEAGSLFYENCRKVIAIVESTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + L+L +  IDI  +  D AI +  P+  S+LI R L    M   A+P YL   + 
Sbjct: 121 PQISLNLLLQDGPIDIVNEGIDLAICIG-PLSDSNLIARHLADWRMLLCASPDYLPMHKI 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                EL   N I       + +       T  +   E     + VN+  +++Q  + G 
Sbjct: 180 FKHPAELAAFNRINHPCANSETLTH-----TRSQECFELTSQRITVNNMQALIQLTLDGL 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G A LP+  V    ++  LV ++ +    +++VY       K   K+K
Sbjct: 235 GFAALPEPEVHKYLESGQLVTLLPEWSLNTYSVYSVTSARDKQPAKVK 282


>gi|107099150|ref|ZP_01363068.1| hypothetical protein PaerPA_01000159 [Pseudomonas aeruginosa PACS2]
          Length = 306

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 6/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  SGSFT AA+ L LS + +SR IS LE  +  +L +R  R L LTE G +  
Sbjct: 1   MRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTEAGERYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + E   + ++P G+LR+ + + +GQ+ L   +  +  L+PD+ I+L 
Sbjct: 61  ERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPDVVIELT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  ++ D+  +  D  I   + +  S  + ++L +IH    A+P YL+    P S+ +L+
Sbjct: 121 LSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPRSVDDLE 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +   D  P   E + +          P+ +   VN    + Q      GIALLP Y
Sbjct: 181 RHVCLRLQD--PAYPEGWIFADEQGERTVSPQ-NTFMVNVAEVMAQAAKADLGIALLPSY 237

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +      N  L+R++        T+Y  YP       K++ + + +  + 
Sbjct: 238 VAAAALRNGELLRVLPGHAMHQRTIYALYPSRRYLDAKIRTWVDLLQQEL 287


>gi|83749104|ref|ZP_00946109.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83724225|gb|EAP71398.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 290

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 129/293 (44%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V ++  F  AAE + +  S++SR+I  LE  +G++L +R  R + LTE G 
Sbjct: 4   LNDMALFVEVVKAKGFRSAAEAMGIPNSTLSRRIGTLEKAIGLRLLHRTTRKIELTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +      +L E   +PSG LR +  +D     L   + EF  LYP I  
Sbjct: 64  LYFERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFAGLYPGITF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L  + +D+  +  D AIR+  P + S LI R L ++  H YA+P YL    EP    
Sbjct: 124 DFDLTPRRVDLVSEPFDVAIRMG-PSEDSQLIARPLASLTPHLYASPGYLDRSGEPHKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H  ++        ++D    ATV             +NS   I +  VL  GI L+
Sbjct: 183 DLERHECLSILKAGSWTLQDGKRTATVSVG------GRFTLNSVGMIRRLAVLDLGIVLM 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P+ IV D   +  L RI+         VY    E      K + F  F+  + 
Sbjct: 237 PEEIVADELASGKLRRILPGWHGTPMPVYAIT-ETRLLPAKTQRFIEFLRARL 288


>gi|157372399|ref|YP_001480388.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157324163|gb|ABV43260.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 310

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 141/302 (46%), Gaps = 5/302 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   + VF  V   G+F  AA+ L++++S++ + I+ LE  +G+ LF R  R  TLT
Sbjct: 1   MRTDLKGIPVFVAVVECGNFAQAAQDLNITRSAVGKAIARLEERLGVTLFQRTTRNQTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G  L++ +      +   +  +     +  G+LRI+  + LGQ  +   L      YP
Sbjct: 61  EEGEILYQQSRIALDCIREAEDVIHLGKTQVKGRLRISLPVLLGQRCIAPILLTIAKSYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +++ +++  +  D A+R+ +   SS L  R+L    M   A+  YLK    P
Sbjct: 121 QLKLELSFNDRQVNLFDEGFDLAVRIGELADSSFLQARRLGQHGMILCASAQYLKTHLVP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ EL +H  I +   +   + ++       R I     + L  + +++I    +   G
Sbjct: 181 RTLSELQEHPAIGY--QLGGKILNWQLNDMEGREINFRPNTVLAADDFVAIAAAVISDLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +A LPD++V        + +I+ +  +  F +   + EA     K++   + +  K  + 
Sbjct: 239 VAWLPDWLVSKEIAQGQIQQILPECTSMKFAISAVWLEAAWMPQKIRIVIDELLAKLPEQ 298

Query: 298 KF 299
            F
Sbjct: 299 IF 300


>gi|134291770|ref|YP_001115539.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134959|gb|ABO59284.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 305

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 135/293 (46%), Gaps = 13/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   +
Sbjct: 7   MRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  +++  +  +  +   P G+L++     + + ++   L EFL  +P I I+L 
Sbjct: 67  ERSVAVLREIDDMEASVSHARNVPRGRLKVNLPPAMARQVVVPALPEFLEAHPGIMIELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S +I +++ ++     A+P YL    EP ++ +L 
Sbjct: 127 VTDRQIDLVGEGVDCVVRIGA-LDDSGMIAKRIGSLTTCTCASPAYLARFGEPETVDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSGIAL 243
           +H  +    +         W   VD   GEPR+      + VN   + ++  V G G+  
Sbjct: 186 QH--VAVSHISADTGRPRVWDYVVD---GEPRVVQMCGTVAVNDADNYIECGVAGIGLIK 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              Y+V     +  L  ++     P   +   YP       KLK F +++  +
Sbjct: 241 TSLYLVDPYLKSGRLREVLTAFNAPPRPISVLYPPNRHIPVKLKVFVDWLASQ 293


>gi|17988168|ref|NP_540802.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. 16M]
 gi|23500975|ref|NP_697102.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|161618049|ref|YP_001591936.1| transcriptional regulatory protein [Brucella canis ATCC 23365]
 gi|254700873|ref|ZP_05162701.1| transcriptional regulatory protein [Brucella suis bv. 5 str. 513]
 gi|254705239|ref|ZP_05167067.1| transcriptional regulatory protein [Brucella suis bv. 3 str. 686]
 gi|256045849|ref|ZP_05448724.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060201|ref|ZP_05450379.1| transcriptional regulatory protein [Brucella neotomae 5K33]
 gi|256368526|ref|YP_003106032.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260563139|ref|ZP_05833625.1| bacterial regulatory protein LysR [Brucella melitensis bv. 1 str.
           16M]
 gi|260567294|ref|ZP_05837764.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40]
 gi|261324177|ref|ZP_05963374.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261751385|ref|ZP_05995094.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261755949|ref|ZP_05999658.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|265992265|ref|ZP_06104822.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|294851465|ref|ZP_06792138.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|17983928|gb|AAL53066.1| transcriptional regulatory protein, lysr family [Brucella
           melitensis bv. 1 str. 16M]
 gi|23346833|gb|AAN29017.1| transcriptional regulator, LysR family [Brucella suis 1330]
 gi|161334860|gb|ABX61165.1| transcriptional regulatory protein [Brucella canis ATCC 23365]
 gi|255998684|gb|ACU47083.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260153155|gb|EEW88247.1| bacterial regulatory protein LysR [Brucella melitensis bv. 1 str.
           16M]
 gi|260156812|gb|EEW91892.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40]
 gi|261300157|gb|EEY03654.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261741138|gb|EEY29064.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261745702|gb|EEY33628.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|263003331|gb|EEZ15624.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|294820054|gb|EFG37053.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
          Length = 297

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G
Sbjct: 5   NLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI 
Sbjct: 65  ERLLAQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   
Sbjct: 125 IELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   E F W  +   + I       L   S   ++Q C+ G G+A
Sbjct: 185 QDLSDHDCINL--RLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP        ++  LV ++ D        +  YP   ++   L A    +
Sbjct: 243 YLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEAL 293


>gi|255320475|ref|ZP_05361656.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262378370|ref|ZP_06071527.1| transcriptional regulator [Acinetobacter radioresistens SH164]
 gi|255302447|gb|EET81683.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262299655|gb|EEY87567.1| transcriptional regulator [Acinetobacter radioresistens SH164]
          Length = 300

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 133/296 (44%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERATDIPKSKLSRRVYNLEERLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  +++   ++ +  +     +   S KP G ++++  + + QN +   L +FL  YP
Sbjct: 61  DIGMDIYQHAQDMMNAAQAAHDLIDHLSSKPRGVIKVSLPVSIAQNEIAKILPDFLKQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QL + N+ ID+  +  D A+R+R  +    +LI R+   I  H  A+  YL     
Sbjct: 121 EIKVQLSVTNRRIDVINEGIDVALRVRFNLDNDPNLIIRQFQRIEQHLVASQAYLNEYGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                +L +H +++  D         +      R      +  +  +  + + Q    G 
Sbjct: 181 LTHPDQLAEHRILSMIDDHLDQQLTLHDRENKSRKFKINPV--VMGSDLMMLAQLARQGC 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIALLPD +  D   +  LVR++ D  TP    +  YP        ++ F  ++  
Sbjct: 239 GIALLPDSVTADLVRHGELVRVLPDWNTPHGVFHAVYPSRRGQLPSVRVFIEYLVE 294


>gi|107028619|ref|YP_625714.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690222|ref|YP_835845.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897783|gb|ABF80741.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648311|gb|ABK08952.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 324

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L  
Sbjct: 121 RYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL+  +L     +    +  + +  FN +A             L     ++I +  +
Sbjct: 181 NAPPLAPDDLTGFETLDTPSVDGRHV--FNLIAPDGTRHVHEHDPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|317407127|gb|EFV87129.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 294

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 137/284 (48%), Gaps = 7/284 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF +VA + SF  A   L +S S++ + ++ +E  + ++LF+R  R +TLT +G K    
Sbjct: 9   VFVLVADTRSFAEAGRTLGVSPSAVGKSVARMEAHLKVRLFHRSTRHITLTPEGEKFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  ++E  ++EL E++  PSG+LR++        L +  +  F+  YP +++ L   
Sbjct: 69  CRRILCEVEAAELELSEAAGTPSGRLRVSLPR--YSRLFEPAIATFMKQYPQVRLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  + +Q S L +R+L        A+P YL     P    +L +H
Sbjct: 127 DRMVDVIGEGYDAVVRSGE-MQDSGLKRRRLGQFRRILAASPDYLARHGTPRRASDLQRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +     V  P  E  +  L  NS  + +   +   GI  LPD+ +
Sbjct: 186 CCLHYRYPSTGKLEQWPLKTAVGAPAPELPL-TLVCNSVETRIFLALGDLGIVCLPDFTI 244

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    +  LV +M++    + T++  +P +   + KL+ F + +
Sbjct: 245 RQELASGRLVTVMDERTRGNATMWALWPASRHPSPKLRVFVDHL 288


>gi|71726093|gb|AAZ39216.1| putative bacterial transcriptional regulator [Janthinobacterium
           lividum]
          Length = 303

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 124/289 (42%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++  F  V   GS + AA    ++ + I R++  LE  +G+KL  R  R L LT +G+
Sbjct: 4   FRQISTFVEVVAKGSLSAAARAEGIAPAMIGRRLDALEQRLGVKLLQRTTRKLALTNEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +LE  +  + E SVK SG L I+     G+  +   +  F+  + D+ +
Sbjct: 64  AFLEDCQRILGELEEAEAAVAERSVKASGHLLISAPAGFGRQHVAPLIPSFVAEHRDVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D+  +  D AIR+   +  SSL+  KL         +P YLK    P    
Sbjct: 124 SLNLNDRLVDLIGEGIDVAIRIAS-LSDSSLVSTKLADNQRVLVGSPAYLKRAGTPRIPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KHN +       +    F       + +       +  N    +  + + G G+A  
Sbjct: 183 DLAKHNCLAISSEGSQRGWTFR---ENGKNVILKVAGNMVCNDGEVLHDWALAGKGLAWR 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V     +  LV +++    P   +Y  + +      +++AF +F+
Sbjct: 240 SMWEVGAEIASGQLVTVLDQFAAPGNDIYAVFAQRRHLPLRIRAFVDFL 288


>gi|73539894|ref|YP_294414.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72117307|gb|AAZ59570.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 302

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 130/295 (44%), Gaps = 10/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + VF  V   GSF+ AA+ L ++ S++SR +S LE  +G  L  R  R   LTE G 
Sbjct: 6   LNAMAVFARVVECGSFSAAAQDLGMTPSAVSRHVSRLEATLGASLLQRTTRAFALTELGH 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++   + +            + + +P G LR++ ++  GQ  L   L   L  YP +++
Sbjct: 66  AVYAACARMSAAAREVTALGTDHTGEPHGVLRVSASVVFGQAWLAPRLPALLERYPALEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L ++ +D+  +  D AIR+ + +    L+ R L  +     A+P +L+    P S +
Sbjct: 126 QLTLVDRMVDLVEEGLDVAIRIARELP-PGLVARPLRPVRYQLVASPGWLRLHDAPASPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL     +  G       E ++            RI     VN+ ++I+      +GI L
Sbjct: 185 ELPHTRCVYLG--YGAFGERWSLRHKTSGDDVTVRIPPRFTVNNSMAIVAMVERDAGIGL 242

Query: 244 LPDYIVK---DNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +PD+       +  LV +++D         T Y  Y        K++AF +++  
Sbjct: 243 VPDFSAAAGLADGRLVTVLDDWDILEPYIGTAYAVYTPTRHVAPKVRAFVDYLVA 297


>gi|197286051|ref|YP_002151923.1| LysR family transcriptional regulator [Proteus mirabilis HI4320]
 gi|194683538|emb|CAR44386.1| LysR-family transcriptional regulator [Proteus mirabilis HI4320]
          Length = 301

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 129/302 (42%), Gaps = 6/302 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  F  V   G F+ AAE L + +S +SR+I+ LE  + + L YR  R   +T
Sbjct: 1   MKYDLNDLYYFVKVVEFGGFSQAAETLGIPKSKLSRRIADLEERLKVSLIYRSTRQFHVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   ++    V  + E  Q  +  +   P G ++++  + L Q  +Q  L +F+  YP
Sbjct: 61  KIGQTFYQQCKNVVEQAEIAQEVICSAQGHPHGTIKLSCPVALLQIYIQDILVDFMAKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI IQ++  N+ +D+  +  D A+R+R  P+  S L  + L        A P        
Sbjct: 121 DINIQILAINRPVDVISEGLDLALRVRALPLDDSGLTMKILGYSRRVLVANPLLFATNSA 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S ++L  + ++   +   +                +     L     +++ +  + G 
Sbjct: 181 PDSPEQLADYPILANSEHSQQYT--LTLTHNDGTVSTQHVTPKLATTDVMTLYKATLKGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  LP  +V+    + +LV ++     P   ++  YP        ++   +++      
Sbjct: 239 GITRLPLSVVEKELADGSLVEVLPQWRFPKDVIHAVYPSRKGLLPAIQVLLDYLAQNMAP 298

Query: 297 WK 298
           +K
Sbjct: 299 YK 300


>gi|163858241|ref|YP_001632539.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261969|emb|CAP44271.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 336

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSF+ A E+L + +SS+SR +  LE  +  +LF R  R  +LT +G +  + 
Sbjct: 35  AFMAVATEGSFSKAGERLGIGRSSVSRSVQRLEQHLKTRLFLRTTRATSLTREGERFFKH 94

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  +     ++ E  S  P G LR+++ I  G+N++   L +F   YPDI ++L+L
Sbjct: 95  CHIGVSHIAGAVNDMLELRSGPPRGLLRVSSGIGFGRNVVAPLLLQFSEAYPDISVELLL 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +D + D  D A +  + ++ S ++ ++LV + M   A+P Y      P ++ EL +
Sbjct: 155 NDRPVDFAGDRIDVAFQDGR-LKDSCVVAKQLVPMQMVVCASPAYADARGLPATLDELGQ 213

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H+ I       + +E   W   V   +     S  L  N    + Q  + G GIA +  +
Sbjct: 214 HDCINMTCSSGRVLE---WEFMVQGQVRTFLPSSKLTFNDAYLVRQAVLDGRGIAQVSAH 270

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V+D      LV  +          Y CY        +++ F +++  + R
Sbjct: 271 QVRDCLRRGELVTALTQYAAKDRGHYICYLSREHLPARVRVFVDYMTAQIR 321


>gi|312959897|ref|ZP_07774412.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311285844|gb|EFQ64410.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 332

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 131/303 (43%), Gaps = 15/303 (4%)

Query: 1   MSFDW-----DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           MS +       ++ +F  V  +GSF+ AA QL +S S++SR IS LE  +  +L  R  R
Sbjct: 6   MSINLPLPLLGEMAIFVKVVEAGSFSEAARQLSVSPSAVSRSISRLEKALATRLLQRTTR 65

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            L L+E G ++ +   E+     +      + + +  G +R++    +G+ ++  ++ EF
Sbjct: 66  KLRLSEGGEEVFKRCQEMVSAARSVMEVGGQFTHEAEGLVRVSVPKAVGRFVVHPHMPEF 125

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           L  YP + +QLIL+++ +D+  D  D +IR+        L+ R+L+ I     A P YL 
Sbjct: 126 LRRYPKVDVQLILEDRQVDLIDDNVDLSIRITDS-PPPGLVGRQLLPIEHLLCATPQYLA 184

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P    +L +H+ I  G+        F       + +          N     +   
Sbjct: 185 EHGTPAHPHDLLEHSCIYLGETPGDSRWKFR---QAGKTVTVGVRGRYAANHTGVRLDAV 241

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +   GIA LP +  +   +   LV+++       +     +  +        KL+ F ++
Sbjct: 242 LQHVGIASLPYFTARHALEEGRLVQVLPQWDFIASYHGEAWLLHSPTRYLPPKLRVFIDY 301

Query: 290 IFL 292
           +  
Sbjct: 302 LVA 304


>gi|229526399|ref|ZP_04415803.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229336557|gb|EEO01575.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
          Length = 301

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P
Sbjct: 125 DVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLTDHRCLT-GSVKRWSYQHKETKQTLD----VPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|167553533|ref|ZP_02347282.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322032|gb|EDZ09871.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 321

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMITYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I     I R+L T      A+P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDIN-ELYIARQLATNRRILCASPEYLERHGKPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   K     NW+ T  +     R++     NS   ++ + + G GI L 
Sbjct: 200 LVQHDCLMIQE---KNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITLR 256

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    +   LVR++      +  ++  Y     ++ ++K   +F+  
Sbjct: 257 SEWDVAQYIERGELVRVLPQWYQEA-NIWAVYTRRSSSSDRIKICIDFLTE 306


>gi|222087146|ref|YP_002545681.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724594|gb|ACM27750.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 297

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 135/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA +   S++ +S+ +  LE ++G  L  R  R  ++TE
Sbjct: 1   MDTLTRIRAFIDVVEAEGFSAAARKTGRSKALLSKYVRELEDDLGALLLNRTTRQFSMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  S++  +++     ++E++ +  G+LR++         +  +L +F    PD
Sbjct: 61  AGHTYYRTASDILKEIDNLADLVRENNQQLKGRLRVSVPRTFVDADVGQSLIDFAKENPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D++ +D+  +  D A+R+ K ++ S +I RK+    +H  A   +L       
Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAVRVTK-LEDSGMIARKISDFRVHLCATREFLDRYPALE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     I   D   +   +  ++              L+VNS  + ++  + G GI
Sbjct: 180 HPSDLAHVPFII--DTNTRSQGNIRFVDADSTTFNVAISGTLEVNSPHATLRAALAGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A++PD+I +   ++  L+ +  D +     +Y  YP       K++ F +++
Sbjct: 238 AIVPDFIGRKAIESGQLLTLFNDYLPTDRGIYAVYPHRRYLPAKVRIFVDYL 289


>gi|317053057|ref|YP_004119411.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953384|gb|ADU72855.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 303

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 136/292 (46%), Gaps = 9/292 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F + A+ GSFT AAE+L L++S++ + +  LE  +G+KLF R  R L+LT +G +    
Sbjct: 12  AFVITAQLGSFTAAAERLSLTKSAVGKSVGRLEDRLGLKLFQRSTRHLSLTPEGERFLAS 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                  LE  + EL     +P+G+LR+      G+  +   L +    YP++ + +   
Sbjct: 72  CQSAIEILEQAEAELTSQIAQPAGRLRVDVPAAFGRQRILPILLDITRHYPELSLTVTFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +D+  +  D  IR+ +   SS LI R+L T  +   A+P YL+   EP S  EL +H
Sbjct: 132 ERFVDLIEEGIDLVIRIGELADSSGLIARRLTTQKLVVCASPGYLREQGEPASPSELSQH 191

Query: 190 NLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           + +    L  +  +  +WL   D  +       +  +     +++   + G G++ LP +
Sbjct: 192 HCV----LGFRRNQPLSWLLKGDDGQISRFTPPATHEFADGDAMLAATLAGCGLSQLPLW 247

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +V     +  L  +++        +   +P++ +   K++   + +   A  
Sbjct: 248 LVGKYLQSGELKEVLKGHSGGEVPISALWPKSRQLLPKIRHAVDTLVKAAEQ 299


>gi|157145436|ref|YP_001452755.1| hypothetical protein CKO_01179 [Citrobacter koseri ATCC BAA-895]
 gi|157082641|gb|ABV12319.1| hypothetical protein CKO_01179 [Citrobacter koseri ATCC BAA-895]
          Length = 305

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 138/289 (47%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF  VAR   F+  AE+L +S + IS++++ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMRVARRAGFSAVAEELGVSPAFISKRVALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   ++    EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVDQMMDELSDVRQVPQGMLRIISSFGFGRRIVAPALSALAKQYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I +S+LI  KL T +    A+P +L+    P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDEI-ASNLIAHKLGTNYRILCASPAFLEQHGTPKQLS 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L T +R         L  N    + Q+C+ G GIAL 
Sbjct: 186 DLAAFPCLVIKERDHPFGIW--QLRTKEREYSIKVTGSLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V D   + +LV+++ +   P+  ++      L ++ K++    F+
Sbjct: 244 SWWDVCDNIASGHLVQVLPEYYQPA-NIWAVSASRLSSSAKIRITVEFL 291


>gi|254188559|ref|ZP_04895070.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157936238|gb|EDO91908.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 313

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 129/296 (43%), Gaps = 5/296 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP+
Sbjct: 61  AGERYLQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++    P 
Sbjct: 121 VQVDLTLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEQHGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +          +++  +               +VN   ++      G GI
Sbjct: 181 RPQDLASHVCLGMV-APGLYWDEWKLVGPQGEQSVTLAPPPFRVNVAEALAAGIREGMGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP Y       N + VR+M +  +    +Y  Y        K++ + +F+  + 
Sbjct: 240 GVLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALYASRQYLDAKIRTWVDFLRDEL 295


>gi|327190980|gb|EGE58034.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 302

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 132/294 (44%), Gaps = 10/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +RVF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +E  +     +  +P G LR+     L ++ +  +L  FL  YP+
Sbjct: 61  DGEAYYQRCLSILADIEDAEGAFAGA--RPKGLLRVDVHGTLARHFVLPSLPSFLQTYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+  +   ++ +D+  +  DC +R+  P   S ++ R+L  +     A+P Y+     P 
Sbjct: 119 IEFYMSEGDRLVDLVREGIDCVVRVGTPG-DSDMVARRLAMLDEITLASPAYIAAHGLPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               L  H ++ F       +    ++     R I  P  + + VN+  S +    +G G
Sbjct: 178 HPDRLTGHRMVGFRSSSTGTLLPLEFIVDGAVRNITLP--AAVAVNAAESYISAARMGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +P Y  +++     LV ++E+       V   YP   + + +++ F +++ 
Sbjct: 236 LIQIPRYHAENDLAEGRLVHVLENFPLTPTPVSLLYPRNRQLSPRVRVFIDWLV 289


>gi|254502335|ref|ZP_05114486.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438406|gb|EEE45085.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 310

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 124/289 (42%), Gaps = 7/289 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F    R GSF+ AA  L +SQ ++S+Q+  LE  +G +L  R  R L+LTE
Sbjct: 1   MDKLSALSSFVNAVRLGSFSAAATHLGVSQPAVSQQVRSLEDTLGTRLINRTTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +     S++  KL      +Q +  + SG+L ++      +  L G L +F   YP+
Sbjct: 61  AGERYFAYASDILEKLSEADRSVQSNEAQMSGRLTVSLPYAFTEPELAGFLTKFKAAYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I   + L +  +D+  +  D AIR+   ++   LI +KL  +     A+P YL     P 
Sbjct: 121 ILFDVQLSDAMVDLQKERIDVAIRMGH-LRDDRLIVKKLGDMKRCLVASPDYLNRRGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L  H+ + +  +          +    +         + +N+  ++ +  + G GI
Sbjct: 180 TPENLKTHDFLLYPHIAEAG--SIELVGPTGKAAKVAVSPTMVINNSAALRRAAIAGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +    ++   +     L  I+ED       ++  YP       K++ F 
Sbjct: 238 STAVTWLSAPHFGTGELELILEDWSYGVHPIHAVYPSYRFIPMKVRQFV 286


>gi|170699220|ref|ZP_02890272.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135880|gb|EDT04156.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 306

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 139/289 (48%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A  GS++ AA  L ++ S++S+ I  LE    +KLF R  R LTLT++G 
Sbjct: 9   LTGLIAFSRAASLGSYSAAARALGVTPSAVSKSIQRLEQHFELKLFNRTTRSLTLTQEGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +LH  T  +  ++E  +     +  +P+G L++   + +G +L+   L  F   +P + I
Sbjct: 69  ELHERTLRLLAEMEAIEQAAVSARSEPAGTLKVTAPLPIGIHLIAPALPAFRKRFPKLSI 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D+  +  D AIR+   +  S LI R+L   H+ AYA+P YL     P    
Sbjct: 129 DLRLGDHFVDLVGEGVDVAIRVGD-LSGSRLISRQLSPHHIGAYASPDYLARRGVPKHPD 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + F       +  +N++         P  + + V++  ++    V G G+ + 
Sbjct: 188 DLVDHDCVNFRFQSSGQVFRWNFVTGHGSLDLIPD-AGIVVDTSDAVAAVMVAGGGVGIT 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y+         LV ++ + + P  T+   +PE+ +++  +KAF   +
Sbjct: 247 PAYVAASYVKRGELVPLLTEFVEPRSTITALWPESRRSSPNVKAFVAHL 295


>gi|90411791|ref|ZP_01219800.1| Putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90327353|gb|EAS43717.1| Putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 300

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  A+   L+ S +S++I+ LE ++G++L YR  R LT++E G  
Sbjct: 5   DDLILFAQVVEHGSFSKVADLNSLTNSVVSKRIARLEADLGVQLLYRTTRKLTVSEAGKV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++    V          +       +G ++++     G  LL   + EF  ++P + + 
Sbjct: 65  LYQGAKNVKQAAVEAIDAVYGYGESVTGHVKMSVPTISGDLLLADAVAEFCSMHPGLTVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N  +D+  D  D  IR    ++ SSLI R ++       AAP Y+    +P++ ++
Sbjct: 125 MSLENLFVDLVEDGYDLVIRTGY-LEDSSLIARHILDSQWVICAAPAYIARVGKPMAPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + +        E        +             ++  ++ +  + G G+A +P
Sbjct: 184 LVNHNCLQYAYQTTGASEWE--FKGDNGNYIVKVAGNFSTDNAAALRKAALGGYGLAYVP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V  +    +L+ +    +     +Y  YP   +   K++     I  +
Sbjct: 242 RCLVYQDYLKGDLIDVFPKRVGKKLGIYAVYPFTRQPPRKIRLLIEHIRAR 292


>gi|254247704|ref|ZP_04941025.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124872480|gb|EAY64196.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 324

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L  
Sbjct: 121 RYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL+  +L     +    +  + +  FN +A             L     ++I +  +
Sbjct: 181 NAPPLAPDDLTGFETLDTPSVDGRHV--FNLIAPDGTRHVHEHDPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|84387180|ref|ZP_00990202.1| transcriptional regulator [Vibrio splendidus 12B01]
 gi|84378041|gb|EAP94902.1| transcriptional regulator [Vibrio splendidus 12B01]
          Length = 297

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 133/302 (44%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + VF  +   GS + AAE L LS++ ++R +  LE  +  +L +R  R L+LT 
Sbjct: 1   MDKLEAMNVFVTIVERGSLSAAAEHLELSRTKVTRYLGELENWMDTRLLHRTTRSLSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +   V  E+     +      +S     G+LRI  +  +  + L   +  F+  +P+
Sbjct: 61  AGKETLEVARELLALEASLAGIRNQSREHLKGQLRITASYSIVDSFLMDVIGRFIDKWPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I ++  ++ +++     D AIR+   +   +++ ++L        A+P YLK    P 
Sbjct: 121 VSIDIVSTDQTVNLVESRIDLAIRITNELT-PNIVAKQLGECRSVICASPQYLKEKGTPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L  HN ++F                 +     P    +  N+   ++   + G+GI
Sbjct: 180 NAQDLAHHNCLSFSYFGKTAWT----FNGPNGLESVPIKGNISANTSEVLLSATLKGNGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKAR 295
           ++LP   VK    +  LV ++ +    +  V+  Y    + T  L+AF + +     +++
Sbjct: 236 SILPFPSVKGLIQDGLLVSLLPEWQPKTLGVHAVYGTRKQVTPLLRAFIDHLSDDMEQSK 295

Query: 296 DW 297
            W
Sbjct: 296 IW 297


>gi|194289522|ref|YP_002005429.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223357|emb|CAQ69362.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 303

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 130/301 (43%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRV-----FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L++     F + A  GSFT AA    ++  ++SR +  LE  +G++LF R  R
Sbjct: 1   MKRQFDDLQLGSIELFCLAAELGSFTAAAVAAGVTPPAVSRTVQRLEERLGVRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT++G      +     +L   + ++      P+G+LRI+         +   L  F
Sbjct: 61  QIRLTDEGRVYFEQSRGALAQLLDAERQISGQQRAPAGRLRISLPTPYAHYRVLPVLPAF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP+++I + + N+++D + D  D ++R R P   S+LI RKL    +   AAP YL+
Sbjct: 121 REQYPEVEIDVHISNRNVDFADDTYDLSVRGRAP-DDSNLIARKLEDAELVVVAAPGYLR 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P S ++L +H  I F          +      +        S       L      
Sbjct: 180 RAGTPQSPEDLLRHECIQFERPSSGRRIPWTLRIHGEETDVVTAGSYAVSEDILGGATLV 239

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G+G+     ++V+    +  LV +M D    S      YP A   T +++ F +F+  
Sbjct: 240 RAGAGLFQTYRFVVEQDLRDGALVEVMRDYGGSSRPFVLLYPSARHVTRRVRVFVDFLVE 299

Query: 293 K 293
           K
Sbjct: 300 K 300


>gi|27382074|ref|NP_773603.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355244|dbj|BAC52228.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 329

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 147/300 (49%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +++VF  V  + S++ AA +L ++ S++S+ I  +E  +G++LF R  R L+LT
Sbjct: 1   MDNRIGEMQVFLRVVEAQSYSEAARRLLMTPSTVSKLIGRIEARLGVRLFERSTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   H  +  +  +L+  +  +   +    G +R+ TT+  G   L+  L  F   +P
Sbjct: 61  SEGRMYHDKSVALLAELDGIERGISRGAAAAGGTIRVNTTVSFGIFGLEPLLPAFWQAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + + L ++ +D+ +D  D A R+  P+Q+S+++ R++  +     A+P Y+    EP
Sbjct: 121 EIVVDISLSDEIVDMYLDRTDVAFRVG-PLQASAMVARRIGVVKRRIVASPDYINRLGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +Q+L +HN + F       +     L    R         L  N+  S+ +  + G G
Sbjct: 180 KRVQDLSRHNCLGFNFRRSAPVWP---LKESGRIADRAISGSLLANNAQSLRRMAIAGIG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +A L DY V+D+     LV +++        ++  Y    +   +++AF +F+  +  D+
Sbjct: 237 LARLADYHVRDDISAGRLVEVLKGTAGDEEQIHALYHGGPRLPFRVRAFLDFMCPRLTDF 296


>gi|295097732|emb|CBK86822.1| Transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 308

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEQGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L     E L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAAMTAEMLKEYPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L ++ M   A+  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGSMPMVVCASKSYLAQYGVPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++I ++ V G+GIA +
Sbjct: 183 DLSNHSWLEYSV---RPDNEFELIAPEGLSTKLLPEGRFVTNDPMTISRWLVAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +++ +  +  L  +     +    VY  Y E  K   K++   N++
Sbjct: 240 PLMWVINEINSGVLEILFPRYQSDPRPVYALYTEKDKLPLKVQVCINYL 288


>gi|15599369|ref|NP_252863.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|218889497|ref|YP_002438361.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254242858|ref|ZP_04936180.1| hypothetical protein PA2G_03625 [Pseudomonas aeruginosa 2192]
 gi|9950383|gb|AAG07561.1|AE004834_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126196236|gb|EAZ60299.1| hypothetical protein PA2G_03625 [Pseudomonas aeruginosa 2192]
 gi|218769720|emb|CAW25480.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 307

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 141/295 (47%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R L LT 
Sbjct: 1   MDRFDAMQAFARVVDTGSFTKAAETLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  +L+  +  L  +++ P G+LRI     L + LL   L EF   YP+
Sbjct: 61  DGAAYYERVVRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ +D+  +  DC IR    ++  SL+ R++  + +  YAAP YL+    P 
Sbjct: 121 IQIDLGVSDRLVDLIDENVDCVIR-GGELRDQSLMARRVGDLQLGVYAAPAYLQRAGVPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
             +EL+  +    G L  +  +   +        +       L V+   + +   + G G
Sbjct: 180 HPRELEDSHQRIVGFLWARTGKALPYAMRRGEECLRVAGRHVLAVDDGNAYLAAGLAGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP Y+ ++      L+ + ED       +Y  +P     +GKL+ F  ++  
Sbjct: 240 ILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWVAE 294


>gi|309780463|ref|ZP_07675211.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308920737|gb|EFP66386.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 303

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 57/292 (19%), Positives = 122/292 (41%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   GS   AA    ++   I R+I+ LE  +G+KL +R  R + +TE
Sbjct: 1   MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVKLLHRSTRRIAVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG+       +   +L+  ++ + E   K +G L ++     G+  +  +  +FL   PD
Sbjct: 61  QGAVFMEQCKKALGELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPDFLRANPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I   L ++ +D+  +  D  IR+   I   + +  +L +        P Y      P 
Sbjct: 121 VRISFNLTDRVVDLVREGYDVGIRIGGAI-DPNFVAIRLASNKRVVCGTPAYFAKHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +HN + F     +    +       + +       L  N    + ++   G G+
Sbjct: 180 TLDDLARHNCLAFNLQGGQQRGWY--FQQNGKAVTVKVNGNLDCNDGELLHRWMGEGLGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                + ++   ++  L+ +++D   P + +   YP+      K++ F   +
Sbjct: 238 GWRSTWEIQPELESGALMTVLDDYALPDYDILAVYPQQRPVPAKIRFFIEHL 289


>gi|262370254|ref|ZP_06063580.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262314596|gb|EEY95637.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 296

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 139/301 (46%), Gaps = 10/301 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  SGS   AA+QL  + S +SR +  LE+++ + L  R  R L LT
Sbjct: 1   MKSTIEELTAFVSIVDSGSIVKAAQQLDQTTSGVSRALQRLESKLNVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +      ++   L   +  LQ +  +  G +RI +      +++   ++EF+  YP
Sbjct: 61  YEGQQFLTKARKILLDLTEAEESLQNNDAEAFGLIRIDSATPFVLHVIVPLIEEFMQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I++   ++ ID+     D AIR  + +  SSL  + L    ++  A+P Y +    P
Sbjct: 121 KIDIEITNHDQVIDLLEHKTDVAIRFGE-LADSSLHAKLLCKSRLYIVASPVYAQKHGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H L+ F    P  +  +      +  I + +I C   ++  ++ Q  + G+G
Sbjct: 180 KNAAELSSHTLLGFSQ--PAHLNTWPIQLEDEPLIIQAKIKC---SNGETVRQLALQGAG 234

Query: 241 IALLPDYIVK---DNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L  ++V+    +   + ++ED +      ++  Y +      +++ F +F+  K + 
Sbjct: 235 IACLSRFMVEQDIQDGRFIALLEDQIQIKEQKIHAVYYQQNYVPKRIRLFIDFLAEKLKA 294

Query: 297 W 297
           +
Sbjct: 295 Y 295


>gi|167035575|ref|YP_001670806.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862063|gb|ABZ00471.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 315

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 131/292 (44%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA+ GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRESHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + N+  D+  +  D +I L   +  S  + ++L   +    A+P Y+       
Sbjct: 121 VTFDLTMANRVPDLLDEGYDVSIVLATELPDSGFVSQRLGITYSIVCASPGYIARHGTAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L KH  +     +   +E + +     + +     S   VN+  ++      G G+
Sbjct: 181 KPADLLKHACLRMVSPVIP-LEKWLFDGPEGQEMVNITSSPFMVNTADAMKTAIRSGMGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP Y   D   + +LVR++ +       +Y  YP       K+K +  ++
Sbjct: 240 GVLPIYSAIDGLRDGSLVRVLPEYRLQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|117918975|ref|YP_868167.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611307|gb|ABK46761.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 317

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 138/299 (46%), Gaps = 8/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L L+++++SR+I+ LE++ G +L +R  R L LTE 
Sbjct: 1   MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   +++   L++ + +L        G L+I   I+LGQ  L     +FL LYPDI
Sbjct: 61  GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++      + L    LV  +    A+P YL     P  
Sbjct: 121 TIEAELTNRKVDVIEEGIDLLFQIADS-SDTRLQSYSLVNAYKSLMASPSYLAEHGTPKV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L KH  I         +E    L      +    ++ L VN+     +  + G GI 
Sbjct: 180 PQDLAKHKAIRLQSA---HIEGAWKLFDGQSWVVIEPVTQLTVNNVTIAREAAIAGLGIT 236

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDW 297
            +P  I ++      LV +++D       V   YP+      K + F  FI+    + W
Sbjct: 237 AVPSIIAQEAIEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIYTALFKRW 295


>gi|209518411|ref|ZP_03267234.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501132|gb|EEA01165.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 296

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 135/291 (46%), Gaps = 8/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +L  F+ V  +G F+ AA +   SQS+IS+ I  LE  +G+ LF R  R +TLT+
Sbjct: 1   MDRFHELNAFFAVVEAGGFSAAARRTGESQSAISKAIGALEKRLGVPLFNRSTRSVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG K +  T  +  +++    EL  S++  SG +RIA     G+  +   + E L L+P 
Sbjct: 61  QGQKYYERTKPLLDEIDVADSELTSSTLDVSGLVRIACASTFGRLHVLPLVPELLSLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L+L +   D+  D  D AIR+  P+ +   + +++ +  +    +  Y +    P 
Sbjct: 121 LRVDLVLSDYVRDMVEDRIDLAIRVG-PVNNPDSVVKRIASTPLVCVGSRRYFERHGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  HN + +G L+      F+           P    L  NS  +I    + G GI
Sbjct: 180 EPSELANHNCLLYGGLLESANWPFH---GPRGRFSVPVRGNLSSNSVETIRSAVLAGVGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L     + D   +P++V +++D I  +  V   +P       +++    F
Sbjct: 237 GLFAKLSLADELEHPDIVTVLDDFIQDARDVSIIWPRRRFVPARVRRVTEF 287


>gi|17548668|ref|NP_522008.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430916|emb|CAD17598.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 292

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 131/300 (43%), Gaps = 12/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F  V ++  F  AA+ L +  S++SR+I  LE  +G++L +R  R + LTE
Sbjct: 1   MDHLNDMALFVEVVKARGFRGAAQALGMPNSTLSRRIGALEKAIGLRLLHRTTRKIELTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +      +L E   +PSG LR +  +D     L   + EF  LYP 
Sbjct: 61  AGLIYFERCKRIVDEARLAHEQLGELLAQPSGVLRASLPVDFAVTYLAPLIAEFASLYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I     L  + +D+  +  D AIR+ +P ++S LI R L ++  + YA+P YL+   EP 
Sbjct: 121 INFDFDLTPRQVDLVSEPFDVAIRMGEP-ENSQLIARPLASLQANLYASPGYLERSGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  +    +    + +          +  P      +NS   I +   L  GI
Sbjct: 180 TPADLGQHECLGMLKVGSWTLHEGA------HTVTTPVGGRFMLNSVGMIRRLATLDLGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            L+P+ IV D+     L R+M         VY    E      K + F  F+  +    +
Sbjct: 234 ILVPEEIVADDLAAGRLRRVMPGWHGKPMPVYAIT-ETRLLPAKTQRFIEFLRERLAQRR 292


>gi|293604233|ref|ZP_06686641.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292817458|gb|EFF76531.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 301

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 128/296 (43%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  GS + AA  L +S++ +SR ++ +E  VG++L +R  R L+LT 
Sbjct: 1   MDRLKAMQVFVEVADRGSLSAAAVHLDMSRAMVSRYLAEMEQWVGVRLLHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++      ++   +   +  +      P G LRI T++  G   L   + +++  +P 
Sbjct: 61  AGAETLPRCRQMLDMVGDLRSAVSTPEDTPRGLLRITTSMSFGARHLASAVTDYVKQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             + L+L  + +++  +  D A+R+   +   +LI RKL        A+P YL     P 
Sbjct: 121 TSVDLMLVERAVNLVEERVDLAVRITNDL-DPNLIARKLAVCRSVVCASPEYLSREGVPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L   N +T                   +P+  P    +  N    ++Q  + G+GI
Sbjct: 180 RVEDLSLRNCLTHSYFGKSLWR----FERDGQPVDVPVSGNISANEVSMLLQAALEGAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+LP Y   +      L  I+         +Y  Y    +    L++  +F+  + 
Sbjct: 236 AMLPTYYANEYIAAGRLKAILPQCKPQELGIYGVYASRRQMPLILRSMLDFLVERL 291


>gi|282890944|ref|ZP_06299458.1| hypothetical protein pah_c032o023 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499159|gb|EFB41464.1| hypothetical protein pah_c032o023 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 301

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 12/291 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  +  + SF  AA++L +S +++S+Q+  LE  +G++L +R  R L L+E G 
Sbjct: 4   FDQILYFMAIVEANSFAKAAKKLSISTAAVSKQMHLLEKHLGVELIHRTTRRLELSESGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++ H++E  +  +     +P G L + +     Q+ +   L EF+  YP + +
Sbjct: 64  LYFEHCKKIVHEMEEAERLISNVRAEPRGNLFVVSGRHFAQHYILPFLCEFVQAYPQVCL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSL-IQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L  +  D+  +  D  I     I    L +QRK+ T      A+P+YL     PL  
Sbjct: 124 NLELAERIPDLYQEKIDLVI--GYSIPGPELAVQRKIATTTYVLCASPNYLHKYGTPLKP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  IT     P     FN  + +           L++N   ++ Q  + G GI  
Sbjct: 182 ADLTNHIYITHSMRKPDDKLSFNDGSEIHLN------PMLKLNDSNALAQCAIAGLGIIK 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  YIV +     +LV I+     P   +Y  Y E+     K++ F +F+ 
Sbjct: 236 IHHYIVAEALEKGSLVEILASYKEPKTPIYLYYQESRHLQPKIRYFIDFVL 286


>gi|116253006|ref|YP_768844.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257654|emb|CAK08751.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 300

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 138/294 (46%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G F+ AA    ++ S++S+ ++ LET +G +L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERGGFSAAATARRMTPSAVSKLLTRLETRLGARLVNRSTRRLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   +   + +   +  + SG++RI T+   G ++L   +  F+ L+P + + +
Sbjct: 71  YERCITILADIAEAERQ-ASTGEQASGRIRINTSGSFGNHVLAPLVPTFMALHPAVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  + AD AIR   P+++SSLI RKL        A+P YL    +P +I +L
Sbjct: 130 SHTDRIVDLMEERADVAIRAG-PLKNSSLIARKLGVTGKIIVASPGYLSRHGKPRTIADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I F     + +E ++ L      +  P    LQV    S+    + G+G+A L  
Sbjct: 189 RHHCRIGFS--YARAIEGWS-LREGGETVTIPITPGLQVGDGESMRHLALSGAGLARLAA 245

Query: 247 YIVK---DNPNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V+   D   LV ++E+         Y  Y  +      +++A  +F+    R
Sbjct: 246 FTVRADIDAGRLVPVLEEANPGDLEEFYAVYMGQGGPLPARIRALLDFLVGHVR 299


>gi|37522429|ref|NP_925806.1| LysR family transcriptional regulator [Gloeobacter violaceus PCC
           7421]
 gi|35213430|dbj|BAC90801.1| LysR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 321

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 137/296 (46%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V   GSF   AE+ +L+ S++SR IS LE  +G +L  R  R L+LTE G
Sbjct: 12  DTNDMAIFACVVNLGSFARTAEEHNLTPSAVSRVISRLELRLGARLLQRSTRKLSLTEAG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H    ++   +   + E+  ++++P G L+++  +  G+  +   +   +  +P++ 
Sbjct: 72  AIYHARVIQILADVAEAEAEVAAANLQPRGTLKLSVPVVFGRLHVAPLIGRLMRQFPELA 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D+  +  D A+R+   +  S L+ R+L T      A+P YL     P+  
Sbjct: 132 VELTLTDRFVDLIEEGIDLALRIGA-LPDSRLMARRLCTNRRILVASPDYLARAGTPVRP 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ + F  L          L   +          L  N+  ++++  +   GI  
Sbjct: 191 ADLTRHSCLIFTALNRPRDWR---LVGPEGTTSVSVTGRLSANNGDALLEAALESLGICP 247

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              ++  +      LVR++ +       V+  YP A + + K+++  + +     D
Sbjct: 248 TATFVAAELLMRGELVRVLPEHEFEPTAVHAVYPSARQLSTKVRSAVDLLVRTFAD 303


>gi|296115610|ref|ZP_06834237.1| regulatory protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295977859|gb|EFG84610.1| regulatory protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 297

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 133/295 (45%), Gaps = 7/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+VF  VAR  SFT AA ++ +SQS++S  I  LE+ +GI+L  R  R ++ TE G
Sbjct: 5   NLNDLQVFLSVARERSFTRAAAKIGISQSALSHTIRHLESRLGIRLLTRTTRAVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +  +++     L E   KP+G +R++ +    +++L   L+  L  YPDI+
Sbjct: 65  ERLLNRVGPLLDEVDAHIDALSELRDKPAGTIRLSASDHAIKHILWPKLRTILHQYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ DN   DI  +  D  +R+   +    +  R    I      AP YLKN   PL  
Sbjct: 125 VELVQDNGLTDIVTERLDAGVRMGDQLAKDMISARISPDIRFAVVGAPSYLKNNPAPLHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I            + +       I       L  N+  +I++  + G G+A 
Sbjct: 185 RDLVSHTCINNRLPTLGGFWPWEFQEKDGPEIKIRVDGQLAFNNIFNIIEAALDGFGLAY 244

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP+ +         LVR++E         Y  YP   +++    AF   +    R
Sbjct: 245 LPEDLALPYISQGRLVRVLEKWSPYWDGYYIYYPSRRQSSP---AFLT-LVEALR 295


>gi|209549940|ref|YP_002281857.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535696|gb|ACI55631.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 307

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 133/294 (45%), Gaps = 5/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + +F  V  +GSF    + + LS+S+  + +  LE  +G +L  R  R L+LT++G
Sbjct: 5   NLNDILIFMAVVDAGSFIAGGQAMGLSRSAAGKAVIRLEDRLGARLLNRTTRTLSLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++   +   +  L   S  P G LR+      G+ ++   L+++L  +PDIQ
Sbjct: 65  RVFYERGLQILASVAEAEASLGGQSGMPRGLLRLTVPDAFGRLVVLPLLEKYLRAWPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   +   DI  D  D AIR+      + L+ R + T      A+P YL     P  I
Sbjct: 125 VEVSFTDHLSDIIEDGFDLAIRIGAAASDTRLVSRVIATYKTRLCASPSYLAANGAPREI 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ + F +      + + +       I     S L+++S  +I    + G GIAL
Sbjct: 185 EDLAAHDCLIFAN--RNQRQGWRFRGKGGSWIKAQGRSRLRLDSGEAIRDAALAGLGIAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPD+++  +     L +++ D+      +   YP+      ++  F + +    
Sbjct: 243 LPDFLIAGDLAAGRLRQVLPDLEADDAKIVTLYPDKRLLEPRIHRFVDLMVEAL 296


>gi|91779298|ref|YP_554506.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691958|gb|ABE35156.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 302

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 130/299 (43%), Gaps = 9/299 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L  F  +A   SF+ AA  L +S S++S  + GLE  + ++LF R  R + LTE G 
Sbjct: 6   LSELTAFVAIAHQRSFSAAARTLGVSPSALSHAMRGLEARLDVRLFNRTTRSVALTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R        LE    E   +  +PSG +RI+ +    + L+Q  L  FL  YPDI +
Sbjct: 66  QLLRRVGPAIADLEDAVNEAASARNRPSGSIRISASESAARPLVQHVLPGFLATYPDIHV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + ++D + +DI  D  D  IR+ + +    +  R    +   A A+P Y+    +P +  
Sbjct: 126 EFVVDTRLVDIVADGFDAGIRVLQDVPRDMIATRFGPDMRFIAVASPDYVARNGKPKAPH 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I F             L    +         + + +   +++  + G GIA +
Sbjct: 186 DLARHRCIRFRFESGALYRWD--LEYRGKGASVDVDGPMTLGNLNLMVEAALAGIGIAWV 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF----RNFIFLKARD 296
            D +  +   +  LV+++ +       +   YP        L+ F    R +   +ARD
Sbjct: 244 SDQLAAEYLASGRLVQLLAEWSPSFPGLCLYYPANRHPPTALRLFAQSVREWAKGEARD 302


>gi|262278639|ref|ZP_06056424.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258990|gb|EEY77723.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 298

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 7/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++  F  V  SGSFT AAE L LS+S +S  I  LE ++   L  R+ R + LT
Sbjct: 1   MQKNLKQITSFLQVVDSGSFTKAAEILGLSRSMVSIDIKQLEKQLNTSLLIRNTRNIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++  +++      Q      +G LR ++T + GQ  +   L EF  LYP
Sbjct: 61  EIGQHFYEDFKQIQLQIDDAFERSQHLGTSITGTLRFSSTNEFGQRFILPLLPEFCRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q   ++   D+  +  D  IRL   ++SSSL  RK+    ++  A P +++N    
Sbjct: 121 HLRLQYSFNSSLDDLVTEKLDLVIRLGN-LKSSSLKTRKIGEYPIYIVATPQFIQNHPV- 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            +I +L     I    L+      +    ++      P I S  + NS  +I Q  +   
Sbjct: 179 ENISDLADVPWIGHT-LLNWQDSQYILQNSLGEQYSLPFIRSQYESNSITAIHQMALSSL 237

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIA+ P ++V ++     L+R+  D   P   +   YP       K +AF +F+  + 
Sbjct: 238 GIAICPAWLVDEDIQQNRLIRLFPDFSLPLQNIQLLYPSTSNLPAKTRAFIDFLVARL 295


>gi|262199468|ref|YP_003270677.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262082815|gb|ACY18784.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 317

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 137/297 (46%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F +    G+FT AA +L LS  S SR ++ LE E+G+ LF R+ R +  T
Sbjct: 1   MRSKLATIEIFCLAYELGTFTAAARELGLSPQSASRALARLEGELGVVLFRRNTRHIQAT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     V   L+  ++EL   + +PSG +R++     G +     L EF   +P
Sbjct: 61  EAGRTYYETCRSVLKALDAVEMELPGGADEPSGDVRVSVPTTYGHHRFLPLLAEFRRRHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + + +DN+ ID   D  D AIR+ K +  +  I RKL    +  +A+P YL+   EP
Sbjct: 121 RVFVDVQVDNRTIDFVRDRFDVAIRMGK-LHDAPFIARKLGDFSLGLFASPAYLRARGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ ++D H  + F  ++P+  +   W    +     PR +    +  L ++     G G
Sbjct: 180 RSLDDIDNHECVLF--VMPRTGKILPWSLAGEPRSYTPRAAIRVRHDVLGLISIARAGGG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  + DY+V++      LV I+ D    S      YP        ++A   F+   A
Sbjct: 238 IIQIYDYLVENELARGELVEILPDYRGRSRPFSLIYPPEAMRRPPVRALVEFVVHSA 294


>gi|114763061|ref|ZP_01442491.1| transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114544385|gb|EAU47393.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           HTCC2601]
          Length = 300

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L++F   A  GSF  A  +L +S +S++R I+ LE  + ++LF R  R   LT  
Sbjct: 1   MDSTELKIFIATAEEGSFAGAGRKLQISPASVTRAIAALEARLEVRLFTRTTRQCRLTLD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +     + +  +LE  + E++   + P+G LR+A  +  G+  +   +  F   YP I
Sbjct: 61  GERFLERCAPLVSELEDAEDEIRTGRLGPNGALRVAAPLSFGRRQIAPLVTAFRRKYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL L ++  D+     DCA+R+ +P +    I R+L+       AAP YL+N   P  
Sbjct: 121 SVQLTLSDESDDLLWREYDCALRVGRPTKGE-FITRRLLKARRVVCAAPLYLENRAAPQV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L +H  I    LI        W+  +D  +    + + L  NS      + + G G+
Sbjct: 180 PDDLAEHRGIV---LIRDGQLLDQWMFEIDGVMRSVSVPATLASNSGEVTQSWALHGEGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L   + V+++     L+ ++ D    +  ++  YP       + ++F +F+   
Sbjct: 237 VLKSIWDVQEDLAEGRLMELLPDYSVDNADIFLVYPARRYVPSRTRSFIDFLAEA 291


>gi|261820422|ref|YP_003258528.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604435|gb|ACX86921.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 293

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 132/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F  V  +GSF+ A+ +L + Q ++S+ I  LE ++   L  R  RGLT TE
Sbjct: 1   MDRLSALETFICVFETGSFSAASRRLGIGQPAVSKAIMQLEQQLATPLLIRSTRGLTPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   +     L   Q  +   +   SG+LRI   +   +  +   L EF+  +P 
Sbjct: 61  AGQHFYEQIAPALTMLGEAQDHVVSGNAALSGRLRICAPVTFARLHIMPRLHEFMAEHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + +ILD++ ID+  +  D A+RL + ++ SSLI ++L +  M   A P Y      P+
Sbjct: 121 LNVDVILDDRPIDLIAEGIDVALRLGE-MKDSSLIAQRLASCTMRLLATPDYFSAHGIPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S   L  +  + +          F+   T        RI   +V++   +    + G+G+
Sbjct: 180 SPDALSAYPAVIYLQGERTDRWIFSQDGTQTMIFPNGRI---RVSAAEGVRATVLSGAGL 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+  +++     ++  ++ +++        ++  YP     + +++ F NF+
Sbjct: 237 AVASEWMFAPELESGQVITVLDSWSLGKMDLWAVYPGGRMTSSRVRTFTNFV 288


>gi|160900209|ref|YP_001565791.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365793|gb|ABX37406.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 299

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 131/296 (44%), Gaps = 5/296 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF  VA  GSFT AAE+L LS++  +R +  LE  +G +L +R  R ++LT+ G++ 
Sbjct: 6   AMQVFATVAECGSFTAAAERLDLSRAMATRHVESLEQWLGARLLHRTTRRVSLTDAGAQC 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R + ++    +  Q E++    +  G LR+  ++  G   +   + +F+ L+P ++I L
Sbjct: 66  LRYSQQMLALADEVQGEMRAGDSQLRGLLRVTCSMSFGHAQMAPAIAQFMRLHPHLKIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D+  +D+     D AIR+      ++LI R L        A+P YL     P +  +L
Sbjct: 126 LVDDGALDLVQQRIDLAIRISAD-PGAALIGRPLAVCESVLVASPAYLDAAGRPQTPAQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +    +     +        D        +    N    +    V G+GIA  P 
Sbjct: 185 QAHRCLGHMRVGRNVWQLARRDDESDEQQIAV-TTWFNANEATVLAAAAVEGAGIAFQPT 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           Y+V+       L  ++ D      TV+  Y         ++A  +F+  +    ++
Sbjct: 244 YLVQPMLQAGQLELVLPDWRPQPLTVHALYSSRRHLPVAVRALLDFLVQRFEGARW 299


>gi|187924121|ref|YP_001895763.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715315|gb|ACD16539.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 302

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  V  +G F  AA+ L +  +++S+ +  LE  +G+KL  R  R +++T 
Sbjct: 1   MDHLQAIRIFARVVETGGFGRAAQSLQMPNATVSKWVKSLEDHLGVKLLERSTRSVSVTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +  T  +  +L+  +  L      P G LR+ +       +L   L EF   YPD
Sbjct: 61  DGTAYYERTRHLLSELDDIEATLGRDRANPRGVLRVDSGGSTASGILIPALPEFCARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ++L + ++  D+  +  DCAIR        +L+ + + T+     A+P YL     PL
Sbjct: 121 IQVRLSVTDRTADLIAENIDCAIR--STADDPNLVTQAIGTLRWTTCASPAYLAEHGTPL 178

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +E+  DKH +  +           ++L   +R + +   + + V+   + +   + G 
Sbjct: 179 HPREIVDDKHAVAGYFSASSGLAPPLHFLRDGERIVLDKVRNTVMVSESNAHLATALAGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI    D++V+       LV I+ D       VY  YP + + + KL+ F +++
Sbjct: 239 GIVHTLDFMVRPAVARGELVPILTDWRPDPLQVYLAYPPSRRYSTKLRVFADWV 292


>gi|220925132|ref|YP_002500434.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219949739|gb|ACL60131.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 302

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF  VA++GSF+ AA +L LS +++S+ +S LE  +G  LF+R +R L LTE G
Sbjct: 6   DFEAWAVFARVAQAGSFSRAAAELGLSTATVSKAVSRLEARLGTGLFHRTSRRLALTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  + + +  + +P G +R+A  +  G   L   L +FL  +P++ 
Sbjct: 66  RAALEGAARIVAAGEAAEADAEAGAREPRGLVRVAAPMSFGLKHLAPLLPDFLAAFPEVA 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     AAP YL     P   
Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LADSSLRVRRLCGVRRSLVAAPAYLARAGRPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L +H  + +  L       F   A     +       L+ N+  ++    + G G+A+
Sbjct: 185 QDLARHACLGYAYLPNPDRWHF---AGPGGEVSVTPSGRLRANNADALTPALLAGLGLAV 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            PD+++ +   +  L R+M     P   +    P       ++ A   FI
Sbjct: 242 QPDFLIWEELASGRLERVMPGWAPPPIALNLVMPPGSLRPARVAALIAFI 291


>gi|300698042|ref|YP_003748703.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074766|emb|CBJ54329.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 297

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F+ VAR  SFT AA QL +S S++S  I  LET +GI+L  R  R ++ TE G
Sbjct: 5   NYHDLLAFFAVARERSFTRAAAQLGVSPSALSHTIRALETRLGIRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + +++     + E    PSG +RI  T    + +L   L + L  YPD++
Sbjct: 65  ERLMQSVAPRFEEIDAELAAVGELRDTPSGTIRITATDYAIRTVLWPRLSKVLRDYPDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D    DI  +  D  +RL   +    +  R    + M    AP YLK    P + 
Sbjct: 125 VEFVTDYGLTDIVAERYDIGVRLGDSLAKDMIAVRVAPDLRMGIVGAPAYLKKHPAPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W     +   + R+   L  N    I+   + G G+A
Sbjct: 185 QDLTTHRCINL--RLPTRGAVYAWELKKGKRELQVRVDGQLTFNGIYEILDAALSGYGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +V+ +     L  ++ED        +  YP   +++  L    + +
Sbjct: 243 YVPEDLVQPHVAAGRLKWVLEDWFPTFPGFHVYYPSRRQSSRALTVVIDAL 293


>gi|168819073|ref|ZP_02831073.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343968|gb|EDZ30732.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320084607|emb|CBY94398.1| HTH-type transcriptional activator ttdR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 321

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALCGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I     I R+L T      A+P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGVDIEIRVGDDIN-ELYIARQLATNRRILCASPEYLERHGKPESVST 199

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   K     NW+ T  +     R++     NS   ++ + + G GI L 
Sbjct: 200 LVQHDCLMIQE---KNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITLR 256

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    +   LVR++      +  ++  Y     ++ ++K   +F+  
Sbjct: 257 SEWDVAQYIERGELVRVLPQWYQEA-NIWAVYTRRSSSSDRIKICIDFLTE 306


>gi|218529137|ref|YP_002419953.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218521440|gb|ACK82025.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 297

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 125/290 (43%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + L  F  VAR+GSFT AA QL +SQ ++S+ + GLE  +G++L  R  R +  TE G
Sbjct: 5   SLNDLVAFVAVARAGSFTKAAAQLGVSQPALSQTVRGLEARLGVRLLARTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E     L E   K +G +RI       Q++L   L+  L  YPDI+
Sbjct: 65  ERLLNAVGPRFDEVEEGLAGLAEMRGKAAGTVRITADEHAAQSVLWPVLRRLLPDYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ ++D    DI  +  D  IRL   +       R    + M A AAP Y     +P   
Sbjct: 125 VETVVDYGLTDIVAERIDAGIRLGGTLARDMTAVRIGPDLRMAAVAAPSYFAARSKPERP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I         +  +       R +       L  N+   I++  + G GIA 
Sbjct: 185 DDLTAHTCINLRLPTHGGLYAWE-FEKGGRELRVWVEGQLVFNTITLILEAALDGFGIAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+  V+ +     LVR++ED   P    +  YP   +    L      +
Sbjct: 244 LPEDGVRAHLAAGTLVRVLEDWCEPYSGYHLYYPSRREPAPALAVLVEAL 293


>gi|330502482|ref|YP_004379351.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328916768|gb|AEB57599.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 297

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 129/293 (44%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  VA  GS + AA  L L+ S++SR I+  E  +G +L  R  R +T T +G   
Sbjct: 9   DMVVFATVAEQGSLSAAARALGLTPSAVSRIIARTEQRLGTRLLLRTTRAITFTAEGEAY 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +   +   +  + +    P G+LR++  +  G+  +   +  F   YP+I + L
Sbjct: 69  LRGARRILADMAEVEEAIADQ-GVPRGRLRVSAALGHGRMTIVPLVAAFSARYPNITVDL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +DI    AD A+R    +  S L  RK+        A+P YL+    P   ++L
Sbjct: 128 SLGDEVVDILGGQADVAVRFGH-LPDSPLTARKVGETGQVVVASPDYLQRHGTPQQPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + F     +    F       +         ++ +S  ++ Q+  +G+GIA + +
Sbjct: 187 LQHNCLRFNFRRAEPNWPF---VRDGQAFSLKVCGNIECSSGEALAQFARVGAGIARIGE 243

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + V ++    +LV +++         ++  +        +++ F +F+    R
Sbjct: 244 FTVAEDIQRGDLVPLLQAFNPGDREPIHAVFVGGSAMPARVRVFVDFLIEHHR 296


>gi|260430606|ref|ZP_05784579.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260418635|gb|EEX11892.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 305

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 8/293 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  V   GS T     L L+ +  S++I  LE+ +G++LF R  R +T TE G   +
Sbjct: 7   LRVFVRVVELGSITSGGRDLRLTPAVASKRIKELESRLGVRLFNRTTRSITPTEVGGVFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   L+  +  +   S  P G LR+   + +G+ ++   + EF   YP++Q+Q+ 
Sbjct: 67  EQAKAVLASLDEAEAVVANFSETPRGALRVTAPLGIGRRIIAPLVPEFTERYPEVQVQMR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A  L  P + S+L  R +        AAP YL+    P S ++L 
Sbjct: 127 LSDRLVDMVGERLDVAFFLGVP-RDSNLKLRHICDCPGVLCAAPGYLERHGTPASPEDLL 185

Query: 188 --KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             KHN +      P+  E F  L T               +    + ++ + G GIA  P
Sbjct: 186 GGKHNCLLL--RYPRSPEYFWQLRTESGLRRLEVAGRFDADDGDVLTRWALDGHGIANRP 243

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              V  +     LV ++        T    +P       K++ F +++    +
Sbjct: 244 RLEVAQHLRSGALVEVLPQTPPLPATFGCLFPHRKLQDPKIRLFVDYMAEAVK 296


>gi|315269548|gb|ADT96401.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 337

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 139/288 (48%), Gaps = 10/288 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    + VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTL
Sbjct: 1   MNKNMIKGMIVFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE GS  +    +V   +E T+ +L      PSG+L+IA  I  G  LL       L  +
Sbjct: 61  TEAGSLFYENCRKVIAIVENTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + L+L +  IDI  +  D AI +  P+  S+LI R L    M   A+P YL   + 
Sbjct: 121 PQISLNLLLQDGPIDIVNEGIDLAICIG-PLSDSNLIARHLADWRMLLCASPDYLPMHKI 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                EL   N I       + +          +   E     + VN+  +++Q  + G 
Sbjct: 180 FKHPAELAAFNRINHPCANSETLTHAR-----SQECFELTSQRITVNNMQALIQLTLDGL 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G A LP+  V    ++  LV ++ +    +++VY       K   K+K
Sbjct: 235 GFAALPEPEVHKYLESGQLVTLLPEWSLNTYSVYSVTSARDKQPAKVK 282


>gi|118161423|gb|ABK64104.1| putative LysR transcriptional regulator [Janthinobacterium lividum]
          Length = 306

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 139/295 (47%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++VF  V  +G F+ AA++L +S SS++ Q++ LE   G++L  R  R ++ T 
Sbjct: 1   MDRLEAMKVFCAVVEAGGFSKAAQRLGISTSSVTNQVAALEKHFGVRLLQRTTRSMSQTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + H    +V   +   +  L +++ +PSG LR+     + +NL+   L  F+  YPD
Sbjct: 61  EGMQCHAQARQVLAYMAALEASLLQAAERPSGSLRVDMPSSISRNLVAPALPRFIAAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L + ++ +D+  +  D  +R+ +P Q SSL+ R L+ +     AAP ++     P 
Sbjct: 121 IALRLTVSDRLVDMVEEGIDVMLRIGEP-QDSSLVARSLLGMDYLCCAAPAFVARHGMPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLAT---VDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           + QELD+   + F  L PK  +   WL               + L  +   S++     G
Sbjct: 180 TPQELDQFACLHF--LYPKARQVRPWLFQDAVSGVAYAHTPPAALAFDHIESMIAAAQAG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI       V       +LV +++   T    V+  +        K++ F +F+
Sbjct: 238 CGIVQALSVSVLQPLREGSLVPVLQPFRTAGPDVWALFHPRQLRAAKVQVFVDFL 292


>gi|113968866|ref|YP_732659.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113883550|gb|ABI37602.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 317

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 138/299 (46%), Gaps = 8/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L L+++++SR+I+ LE++ G +L +R  R L LTE 
Sbjct: 1   MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   +++   L++ + +L        G L+I   I+LGQ  L     +FL LYPDI
Sbjct: 61  GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++      + L    LV  +    A+P YL     P  
Sbjct: 121 TIEAELTNRKVDVIEEGIDLLFQIADS-SDTRLQSYSLVNAYKSLMASPSYLAEHGTPKV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L KH  I         +E    L      +    ++ L VN+     +  + G GI 
Sbjct: 180 PQDLAKHKAIRLQSA---HIEGAWKLFDGQSWVVIEPVTQLTVNNVTIAREAAIAGLGIT 236

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDW 297
            +P  I ++      LV +++D       V   YP+      K + F  FI+    + W
Sbjct: 237 AVPSIIAQEAIEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIYTALFKRW 295


>gi|218677238|ref|YP_002396057.1| Transcriptional regulator [Vibrio splendidus LGP32]
 gi|218325506|emb|CAV27692.1| Transcriptional regulator [Vibrio splendidus LGP32]
          Length = 304

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 135/298 (45%), Gaps = 12/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +++F  V  SGSF+ A   L+++ SS++R I  LE+++   LF R  R L LTE+G 
Sbjct: 2   LELIKIFDQVVESGSFSQAGRALNMAPSSVARNIDNLESKIKSSLFKRSTRQLMLTEEGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H+ ++++         E+Q     P G LR++     G   L   + EFL  YP IQ+
Sbjct: 62  YFHQQSAKILQDSNRLLEEMQGDQGPPEGVLRVSVFESFGNLCLTPLIPEFLERYPKIQV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L LDN  +D++ +  D AIR+  P Q S L  R L+T +    AAP Y++        +
Sbjct: 122 ELELDNNVVDLNSENIDVAIRIGTP-QDSRLKARNLLTNNASLVAAPSYIEKYGTIDKPE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  HN +       K    F   A   + +       L       ++   + G G+ LL
Sbjct: 181 ELQDHNCLLISHERQKNYWYFKKNAVNKKVL---VTGNLISKGGSPLLHAALSGVGVLLL 237

Query: 245 PDYIVK---DNPNLVRIMEDVIT-----PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D+++K   +N  L  ++    +      S  ++  Y         ++ F +F+  K 
Sbjct: 238 SDWMLKPYLENGQLRELLPQWTSMHSEQGSGEIFAIYKNTQYPRPHVRLFIDFLVEKL 295


>gi|296533811|ref|ZP_06896350.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296265862|gb|EFH11948.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 302

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++   + A  GSF+ A  +L L+ S++SR +S LE  +G  L  R  R L  T +G   
Sbjct: 7   EMQAVLLAADLGSFSAAGRRLGLTPSAVSRLVSRLEDRLGTPLLLRSTRALRPTAEGEVY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  ++E T+  +      P G LR++ T+  G   L   L EFL  YP I + L
Sbjct: 67  LARARRLLAEIEETERLVTAG-ALPRGPLRVSATVGFGTQCLVPLLPEFLARYPGITLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D A+R    ++ S+L  R ++       AAP YL     P   Q++
Sbjct: 126 SLSDGLVDLVEERTDIALRAGA-LRDSALKARLVLRSRRVVVAAPAYLARHGTPRLPQDI 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN + F          F    T  R   E     L+ N+  ++ Q C+ G G+A L  
Sbjct: 185 AAHNCLGFNFRHRAGGWPFRDPQT-GRLSTEATPGNLRANNGPTLRQLCLAGLGLARLAR 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK 293
           + V+   D   LV ++E+        ++  Y        +++AF +F+  +
Sbjct: 244 FHVQAEIDAGRLVPLLEEHNAEDVELIHALYVGHGHLASRIRAFIDFLVER 294


>gi|197121404|ref|YP_002133355.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171253|gb|ACG72226.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 300

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/296 (29%), Positives = 149/296 (50%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LRVF  VAR+ SF+ AA +L + +SS SR ++ LE E+G++L +R  R ++L+  
Sbjct: 1   MDLDLLRVFAAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+   + + H LE+   EL E   +PSG LR+   +D+G   L      + L YP +
Sbjct: 61  GTGLYDRIAPLLHGLESALGELPEREEEPSGLLRVTAPVDIGIFFLAELTARYTLRYPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L ++ +D+  +  D A+R+   ++ S+L+ RK   + +  +A+P YL     P +
Sbjct: 121 SVELDLSSRLVDLVAEGFDVALRVAPGLKDSTLVARKASPVQLQLFASPLYLARRGTPRT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL+ H+ +TFG    K       L      +     S +     L + +    G+GI 
Sbjct: 181 EAELEAHDWVTFGTQARKLR-----LEGARGTVEVTPRSRILCPELLFVREAMRAGAGIG 235

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LLP ++ + +     LVR++  ++     +Y   P       K+ AFR+ +    R
Sbjct: 236 LLPSFMAEQDLAAGTLVRVLPRLVRTGGNLYVVTPATRHVPRKVSAFRDLVLELVR 291


>gi|115376665|ref|ZP_01463894.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366346|gb|EAU65352.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 267

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 131/267 (49%), Gaps = 8/267 (2%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           + +S++SR++S LE  VG +L  R  R L LTE G   +   + +  + E  ++ +    
Sbjct: 1   MPKSTVSRKVSELEERVGAQLLQRTTRKLRLTEVGQAYYEHCARIVAEAEQAELAVTRMQ 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             P G LR+   +    N +   L  FL  YP++QI+++  ++ +D+  +  D A+R  +
Sbjct: 61  SAPHGLLRVTAPLAF--NFMGSILAAFLTRYPEVQIEMVCTDRTVDLVEEGFDLAVRAGR 118

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
              SSSLI R+L +I     A+P Y++    P S +EL  H+ + FG      +     L
Sbjct: 119 LPDSSSLIARRLGSIERGVMASPRYIQERGAPKSPKELAAHDCLLFGVGTGGNVWS---L 175

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITP 265
            + +R       + L VN    +    + G GIALLP+ +  ++     + RI+ +  +P
Sbjct: 176 VSGNRSAEVSIRARLTVNEPDMLRAVTLAGFGIALLPNSLYAEDIATGRMQRILPEWSSP 235

Query: 266 SFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +V+  YP    ++ K+ AF +F+  
Sbjct: 236 GASVHALYPVTRHHSPKVMAFVDFLRE 262


>gi|33591706|ref|NP_879350.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33571349|emb|CAE44827.1| LysR-family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|332381125|gb|AEE65972.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 307

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ A+  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLYYFAQVVEQGGFSAASRVLDVPKSRLSRRISQLEDRLGVRLLQRTTRRLRLTTAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+       +  +++    P+G + ++  + + Q +L   L EFL  +P + 
Sbjct: 63  ERYLHYCQEMTASARAAEDAMRQLQSAPAGPVVVSCPVSIAQQMLAPLLPEFLDAWPSVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++ N+ +D+  +  D A+R+R  +   + L+ + L        A+P YL+    P +
Sbjct: 123 VQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHLGIASGTLVASPAYLQRHGTPET 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QEL  H  ++F D  P+    +         +       L  N ++ + Q  V G GIA
Sbjct: 183 PQELASHRTLSFND--PQNEVRWPLTNQRGESVEVAVQPVLASNDFIVLTQAAVRGRGIA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP    +       LVR++ D  +P   V+  YP        ++AF +F+  + 
Sbjct: 241 LLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYPSRRGMMPAVRAFLDFLAKRV 295


>gi|225077091|ref|ZP_03720290.1| hypothetical protein NEIFLAOT_02144 [Neisseria flavescens
           NRL30031/H210]
 gi|224951648|gb|EEG32857.1| hypothetical protein NEIFLAOT_02144 [Neisseria flavescens
           NRL30031/H210]
          Length = 296

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SGSFT AA+QL +S +  S+ ++ LE  +  KL +R++R L LTE G + +
Sbjct: 7   LKVFRQVVQSGSFTRAADQLDISTAMASKHVNHLENTIQAKLLHRNSRNLHLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+T   +    +  P G LR+   +      +   L E+   YP + + L+
Sbjct: 67  RQCSYALDTLDTAAQKAAGGADTPQGMLRVTMPLWFAGGNMSAWLAEYRQRYPKVTLDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ ID+  +  D A+R+ K   S SLI + L  I     AAP YL     P + + + 
Sbjct: 127 LDNRHIDLIAEGFDLALRVSK-TPSPSLIVKPLAKIEFVLLAAPDYLARHGTPDTPEAVM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I       +   +    AT ++ I       ++ ++ L I +    G+GI   P +
Sbjct: 186 QHQAI-LPSYTNQQDREITHRATAEKAILH-LSPVIRSDNTLMIRELIKAGAGIGYQPLW 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            V+    +  L++++ D    +  +   Y +    + K+++F +F+  K  +
Sbjct: 244 AVQQELKDGTLIQLLPDYTIWADQLNATYVDRAFLSAKVRSFIDFLNEKISE 295


>gi|217978813|ref|YP_002362960.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
 gi|217504189|gb|ACK51598.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 300

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 135/299 (45%), Gaps = 10/299 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD   L    V   V  +GSF  A E+L LS S +SR I+ LE  +G++L  R  R L
Sbjct: 1   MTFDARLLSGVGVLIAVVETGSFVRAGEKLGLSDSGVSRAIARLEARLGVRLLDRTTRAL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G + H   + +  +L     EL  +     G+LR+       +  L   L  FL 
Sbjct: 61  RLTDDGRRFHAEATPLLLQLADAAAELGAARANVRGRLRVEVDPFFSRLALAPRLGAFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPD+ ++LI      D+     D AIR  +P ++  LI RKL+   +   A+P Y++  
Sbjct: 121 RYPDLTLELITTEAPGDLVARGFDLAIRFGEP-RAGGLIARKLLDTRILTVASPRYIERN 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCV 236
             P   ++L +H  I + D  P     F W     R I    +   L V+   +++Q   
Sbjct: 180 GRPAQPRDLVRHRCIQYRD--PASGRPFAWEFRKGRKIVPVEVEGPLTVSDVGTMLQAAT 237

Query: 237 LGSGIALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G G+A +       + ++  LV +  D    +F ++  YP   + + +++A  +F   
Sbjct: 238 AGVGVAQVMALGSEALLESGALVELFPDWPDETFPLHAFYPSRHQPSLRVRALIDFCLE 296


>gi|16126756|ref|NP_421320.1| LysR family transcriptional regulator [Caulobacter crescentus CB15]
 gi|221235538|ref|YP_002517975.1| LysR family transcriptional regulator [Caulobacter crescentus
           NA1000]
 gi|13424074|gb|AAK24488.1| transcriptional regulator, LysR family [Caulobacter crescentus
           CB15]
 gi|220964711|gb|ACL96067.1| transcriptional regulator, LysR family [Caulobacter crescentus
           NA1000]
          Length = 292

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F   A + SF+ AA +L LS S +SR ++ LE  +  +L YR  R ++LT+ G 
Sbjct: 4   WDGIDEFVATAEAESFSRAARRLGLSTSGVSRAVATLEERLQTRLLYRTTRRVSLTDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +     + E    P G LR+  +   G+  +   +  F+L +P + +
Sbjct: 64  AFLARARRLIAERDEALASVGEDDGDPRGLLRMTCSTAYGERFVVPAVNRFMLSHPKLAL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ LD+   DI  +  D AIR  + +  S LI ++L +      AAP YL     P SI 
Sbjct: 124 EIDLDDAVRDIVSEGFDLAIRFGR-LTDSRLIAKRLASRTRRLCAAPSYLTRAGAPRSIA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I           D       +R I        + NS  +++   +LG G+  L
Sbjct: 183 DLAAHTCIL-------GAADTWPFRDGEREIAFKPQGRWRCNSGQAVLDAALLGLGVCQL 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P++ V     +  LV ++E        V+  YP       K++     +    
Sbjct: 236 PNFYVDAAISDGRLVPLLEANRPEDEGVWAVYPHLRLLPAKVRLLVEHLEEAL 288


>gi|107029043|ref|YP_626138.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116689798|ref|YP_835421.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105898207|gb|ABF81165.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116647887|gb|ABK08528.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 316

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 125/299 (41%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 16  PLDLLDVALFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 76  DGEVFMARADALLAAADAARASVGRGRSEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPS 135

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  D  D AIRL   ++ S+L+ RKL T       +P YL     P 
Sbjct: 136 VSLDLRLSDEIVDLVDDGYDVAIRLGA-LKDSTLVARKLATNRRVLCCSPAYLAERGTPR 194

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +  GD            AT   P+       L  ++  +I +  V G GI
Sbjct: 195 HPADLTQHECVILGDQRDWS------FATPQGPLTVRVGGRLVASNGEAIREALVDGFGI 248

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     +  LV +++D        ++  YP       K  AF  F+     D
Sbjct: 249 AIKSTWDVGPLLASGALVSVLDDYPFADDVAIWAVYPSRAHVPLKTLAFIAFLAEHFGD 307


>gi|311280764|ref|YP_003942995.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308749959|gb|ADO49711.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 296

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 123/295 (41%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V   GSFT AA+   +S + +++ I  +E  +G +L +R  R   LTE
Sbjct: 1   MDKLAGMEMFVRVVECGSFTAAADASDVSTTMVAKHIRTIEQRLGARLLHRTTRRQQLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  +    +    E    P G + +   +  G  +L   L  ++  YP+
Sbjct: 61  VGQLYYERCRRVLAEFSLAEHSAMELQSTPKGLVHMVAPVSFGSQVLVPELSAYMAQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L LDN+  D++    +  I + + ++  +++ R L +      AAP YL+    P 
Sbjct: 121 VNITLTLDNRLPDLADGNVELGIHIGE-VRQPNVVARPLRSYRRILAAAPAYLRQHGSPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL  H+ +          + +  +         P       N   ++    + G GI
Sbjct: 180 HPRELHDHSCLGIA--YWAHQDRWELMGPNGEMFKAPIGGRFMSNQGSALRMAALHGCGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L P+ ++ D+     LVR++         ++  Y +  + + KL++  +F+  +
Sbjct: 238 VLQPESVLMDDIAQGRLVRVLPAWSYKPTPMFLIYQQDSRPSAKLRSLIDFLMAR 292


>gi|295675268|ref|YP_003603792.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295435111|gb|ADG14281.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 310

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 144/291 (49%), Gaps = 11/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  +GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRHVVEAGSFVGAAEKMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+   +L+     +  +SV P G+LR+++    G N +   + ++   YP + + + 
Sbjct: 67  ERLSQALTELDEAGQAVGAASVVPHGRLRVSSLSAFGLNHVMAAVADYAEQYPQVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R++ T H+   A+P YL+    P S+ +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPGGLKSSSLIARQIATAHLVLCASPAYLRKHGTPKSVADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +  +          +AT D          L VN   +     +LG+GIA+L  
Sbjct: 187 ARHNYLQYAGVSALE------VATGDASSRVRLSGNLIVNQLEAQRVVVLLGAGIAMLGT 240

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++  +     LV ++ D + P    ++  Y      + K+++F +F+  +
Sbjct: 241 EVIGSDLAEGRLVPLLVDEVPPRELPIHVVYTSRRHLSAKVRSFVDFLAAR 291


>gi|218510469|ref|ZP_03508347.1| regulatory protein, LysR:LysR, substrate-binding [Rhizobium etli
           Brasil 5]
          Length = 308

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 127/291 (43%), Gaps = 4/291 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA +L ++ S++S  I  LE  +G++L  R  R +  T+ G +
Sbjct: 7   NDLQAFLAVARDQSFTKAAAKLGVTASALSHTIRQLEARLGVRLLARTTRNVAPTDAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R     + ++     EL E   KP+G +RI  T D  + +++  L  FL  +P+I+++
Sbjct: 67  LMRAIGPHFDEIAARVQELGELRDKPAGTIRITCTDDSIEMVIRPLLAGFLQQFPEIKLE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             +D    ++  D  D  IRL + I    +  R      +   A+P Y ++   P++  +
Sbjct: 127 FYVDYGFSNVVEDRFDAGIRLGEAISKDMIAVRIGPDWRLIVVASPGYFQHNAPPVTPHD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +  H  +         +  +       +         L  NS L ++   + G G+A +P
Sbjct: 187 ITNHACVNIRHRASGPIYAWE-FTENGKEFTVKGDGQLVFNSTLHVLNGAIDGIGLAYVP 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +      +  LV+++ D        +  YP     +    AF + +  +
Sbjct: 246 EQLAMPYIADGRLVQVLSDYCPYFSGYHLYYPNKRHASPAFSAFVDALRHR 296


>gi|107103691|ref|ZP_01367609.1| hypothetical protein PaerPA_01004762 [Pseudomonas aeruginosa PACS2]
          Length = 307

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 141/295 (47%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE LH+S++S+++ +  LE  + ++L  R  R L LT 
Sbjct: 1   MDRFDAMQAFARVVDTGSFTKAAEMLHMSRTSVTQLVQQLEARLRVRLLNRTTRKLNLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  +L+  +  L  +++ P G+LRI     L + LL   L EF   YP+
Sbjct: 61  DGAAYYERVVRLLAELDDAETSLSSAALAPRGRLRIDVPSPLARLLLIPALPEFHARYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ +D+  +  DC IR    ++  SL+ R++  + +  YAAP YL+    P 
Sbjct: 121 IQIDLGVSDRLVDLIDENVDCVIR-GGELRDQSLMARRVGDLQLGVYAAPAYLQRAGVPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
             +EL+  +    G L  +  +   +        +       L V+   + +   + G G
Sbjct: 180 HPRELEDSHQRIVGFLWARTGKALPYAMRRGEECLRVAGRHVLAVDDGNAYLAAGLAGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP Y+ ++      L+ + ED       +Y  +P     +GKL+ F  ++  
Sbjct: 240 ILWLPHYMAREPLARGELLPLFEDWSLEPMPLYLAFPPNRHVSGKLRVFIEWVTE 294


>gi|332530248|ref|ZP_08406194.1| transcriptional regulator [Hylemonella gracilis ATCC 19624]
 gi|332040234|gb|EGI76614.1| transcriptional regulator [Hylemonella gracilis ATCC 19624]
          Length = 305

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 125/296 (42%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++ VF  V  +GSF+ AA Q+ ++ S+ SR ++ LE  +G +L  R  R L L+E   
Sbjct: 10  LNEMAVFVRVVETGSFSEAARQMAVTPSAASRAVARLEKALGQRLLQRSTRKLRLSENAQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +     ++ +  +           +P G LR++    +G+ L+  ++ EFL  YP + +
Sbjct: 70  DVFEHCRDMLNAAQAALEASGRQGEEPRGTLRVSVPKAIGRALVHPHMPEFLERYPQVDV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +D+  +  D AIR+        L+ R+L+ I     A P YL     P   Q
Sbjct: 130 LLRLEDRYMDLYDEQIDLAIRITDQ-PPPGLMGRRLLRIDHLLCATPEYLAAHGVPAQPQ 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN I  G+        F      ++            N+    +   +   GI  L
Sbjct: 189 DLKAHNCIYLGEEPSDSRWKFR---RGEQSTTVQVRGRYAANNTGVRLDAVLRHLGIGSL 245

Query: 245 PDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +  +       +V ++ D       S   +  YP       KLKA  +F+  + 
Sbjct: 246 PRFTAEQALAEGRIVTVLPDWTFQTNYSGDAWALYPRTRHVAPKLKALLDFLGERL 301


>gi|323526759|ref|YP_004228912.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323383761|gb|ADX55852.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 312

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 136/300 (45%), Gaps = 13/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   ++  + E  ++  +PSGKL++      GQ+ +   +  +   YP+
Sbjct: 61  AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+  +  D ++ L   +  S L+ ++L +    A A+P YL+    P 
Sbjct: 121 VHVELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSVACASPAYLEKHGVPH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
           +  +L+ H+ +    ++        W  T D P GE  I    +  QVN   ++      
Sbjct: 181 TPADLEHHSCL---QMVTPVFPPDKW--TFDGPNGEETITLGPATFQVNVAEAMAVAVAS 235

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+ L+P Y          LVR++ D  +    +Y  YP       K++ +   +  + 
Sbjct: 236 GMGVGLIPIYSAISGLRKGELVRLLPDYTSQEMNLYALYPSRQYLDAKIRTWIEHLRDEL 295


>gi|213972137|ref|ZP_03400227.1| transcription regulator protein [Pseudomonas syringae pv. tomato
           T1]
 gi|302062048|ref|ZP_07253589.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato K40]
 gi|302131888|ref|ZP_07257878.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213923114|gb|EEB56719.1| transcription regulator protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 297

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L VF  VAR  SFT AA  L +SQS+IS  I  LE  +GI+L  R  RG + TE G
Sbjct: 5   DFNSLAVFITVARERSFTRAAAHLGVSQSAISHSIRSLEERLGIRLLTRTTRGASPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       Y  +ET    L E   KP+G +RI +      ++L   L   L  YPD+ 
Sbjct: 65  ERLLVSLVPYYEGIETEIAALGELRDKPAGTIRITSPDHAASSILWPKLSRLLPEYPDLT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +  + IDI  +  D  +R+   +    +  R    + M    AP Y  +  +P   
Sbjct: 125 LEINIGYRLIDIVAERFDAGVRIGDQVAKDMIAVRISPDLRMAVVGAPSYFAHRAKPQIP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L  HN       +P     + W  + D      ++S  +  ++   IM   + G G+A
Sbjct: 185 QDLTTHNCANL--RLPTHGGLYAWEFSKDGKALHVQVSGQMIFSNSPQIMAAALQGYGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P+ +V+   ++  L+R++ED        +  YP   ++        N +
Sbjct: 243 YAPEDLVQAYVEDGRLIRVLEDWSPTFPGYHLYYPSRRQSLPAFALVVNAL 293


>gi|152970457|ref|YP_001335566.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955306|gb|ABR77336.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 295

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 130/283 (45%), Gaps = 6/283 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F VVAR  SFT AA QL +SQS++S  +  LET + ++L  R  R +  TE G
Sbjct: 5   NVNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRHLETRLDVRLLTRTTRSVVPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +       ++E     L+++  +P+G LRI         +L   LK F+L YPDI 
Sbjct: 65  ERLIQRLGPHLEEIEQALAALRDTRERPAGNLRITAGEHAASAVLWPALKPFMLQYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ +DN   DI  D  D  +RL + +    +  R    + M    +P YL+    P + 
Sbjct: 125 IEITVDNGLTDIVGDRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSPAYLQRAGTPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  I     +P     + W    D    + R+   L +NS    +     G G+A
Sbjct: 185 WDLAQHRCINL--RLPTRGGLYAWEFARDGREIQVRVEGQLLLNSLPQRIDAAEAGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
            +PD  V +   +  LVR++ +        +  YP   ++T  
Sbjct: 243 YVPDDCVAEALASGRLVRVLAEWTPAFPGYHLYYPSRRQHTSA 285


>gi|312882433|ref|ZP_07742174.1| Transcriptional regulator, LysR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369833|gb|EFP97344.1| Transcriptional regulator, LysR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 298

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 141/294 (47%), Gaps = 6/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +   V  S SFT AA  L +++S++SR+++ LE  +G++L  R  R L LT +
Sbjct: 1   MDLNAIHILVKVVESRSFTQAAIVLDMTKSTVSRKLADLEQALGVRLITRSTRSLVLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++   L   +  + E+     G L++   +++G  +L   + +FL  YP++
Sbjct: 61  GEAFYHSCQQILELLNQAEATVSENQALVKGPLKVVLPVEVGHQVLGEYIHQFLKQYPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L N+++DI  +  D  +++ + +  SSL+ R L +      A+P YLK   +  S
Sbjct: 121 TMNLELTNREVDIIGEGIDLYVQIGE-LVDSSLVSRHLTSSKRVLVASPEYLKKFGQIRS 179

Query: 183 IQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L   H +I   +   + +  +++               L+VN+  + ++ C+   G+
Sbjct: 180 RKDLSPPHQMIDIENNAAR-LPKWDFQPESGESFTLDLPCQLKVNTITACLKSCLDSLGV 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP+++ +++     L+ ++ +   P   V   Y +      + K    F+  
Sbjct: 239 AVLPEFVCREHFKTGRLIHLLPEYAMPEVDVSLVYADRQLMPKRKKLLIEFLLE 292


>gi|254252337|ref|ZP_04945655.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124894946|gb|EAY68826.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 356

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 130/300 (43%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKL-----RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L      +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R
Sbjct: 47  MQRKFDDLLLGSIELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTR 106

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G +      +   +L   + E       P+G LRI+     G   +   L  F
Sbjct: 107 QIRLTDSGRRYFEQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAF 166

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YPD++++  L N++ID + +  D AIR R P   SSL+ RKL    +   AAP YLK
Sbjct: 167 RERYPDVRVETHLSNRNIDFAEEGFDLAIRGRAP-ADSSLVARKLEDAELVVVAAPGYLK 225

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P ++ +L  H  I F          + +    D        S       L+ +   
Sbjct: 226 RAGTPTAVGDLHAHECIQFELPSSGRPIPWLFADAADELDVATTGSYGTSGDVLAGVTLA 285

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G+G+     +IV+    +  LV ++      S      YP A   + +++ F +++  
Sbjct: 286 RSGAGLFQTYRFIVERDLRDGTLVEVLTGFGGRSRPFMLLYPHARYLSSRVRVFVDYLVE 345


>gi|330958307|gb|EGH58567.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 302

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 130/290 (44%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + +F +VA + SFT A ++L +S S + + I  LE  +G +LF+R  R + LT +G
Sbjct: 3   SLGSIALFVLVAETRSFTQAGKRLGISSSGVGKSIGRLEENLGARLFHRSTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +LE  + EL  +   P G+LR++    L   L+   + EF+  +PDI+
Sbjct: 63  SLFLERCRRILAELEAAEKELSNARDLPRGRLRVSVP--LVSGLVMPVIIEFMRAFPDIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R    +  S L+ +++    +    AP Y +    P   
Sbjct: 121 LDIDFSDRMVDIIEEGFDVVLRTGD-LSDSRLLSKRMGGFQLRIVGAPDYFERRGMPAFP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +          E +  L   D          +  N+   ++     G GIA 
Sbjct: 180 ADLVQHACLHHKFPSSGKFELWP-LRREDGADDLDLPQTMICNTTEILVDVARAGLGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPD+++        LV I++D    + +    +P +   + +L+ F +F+
Sbjct: 239 LPDFMIASAIKRGELVSILDDYTVHTGSFRLLWPSSKHLSVRLRVFIDFL 288


>gi|330448310|ref|ZP_08311958.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492501|dbj|GAA06455.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 306

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 135/304 (44%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++   + A  +L LS ++++ ++  LE   G+KL  R  R ++LTE
Sbjct: 1   MDKFSDMTLFISIVKNQGMSAAGRELGLSPATVTARLQALEDRYGVKLLNRSTRHISLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+   E+   ++ T+  LQ  S +  G L+I+   D+G+  +   +  F   YPD
Sbjct: 61  SGALYHQACLEIIDSVKETENLLQTGSQEVRGTLKISAPRDIGKQYISPIITAFCERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L LD+K  +++    D  IR  + +  S+LI RKL        A P YL     P+
Sbjct: 121 VVPYLYLDDKLTNLAESGIDIVIRYGE-MADSNLISRKLAASRRVLCATPEYLAKKGTPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + Q+L  H+ +    +I    E   W  T D +    P +     +    I Q+ + G+G
Sbjct: 180 TPQDLADHHCLA---MIRSNEELKTWHFTDDNQQTVIPLVPKRFSDDGEVIRQWALDGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDV--------ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     ++ +     LV +++           + S  +   Y        +L+ F  F
Sbjct: 237 IALKSILDIQHDIQEQRLVTVLDGYMKNFNASTASASADLNVIYQSRQYQPKRLRLFIEF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LLEQ 300


>gi|322509871|gb|ADX05325.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
          Length = 300

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 145/300 (48%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT
Sbjct: 1   MKSTIEELVAFITIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ ++L   + ELQ+S    +G +R+ +      +++   + +F   YP
Sbjct: 61  QEGQQFLIKARKILNELNAAEEELQKSDQGTAGLIRVDSATPFVLHVIAPLMHKFRECYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+I+L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P
Sbjct: 121 DIEIELNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVWKSRLYIVASPDYLALKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL++H+LI F    P  +  +      +    + +I   + +S  ++ Q  + G G
Sbjct: 180 TQPEELEQHDLIGFTR--PTYINSWPIKVGDEYFFAQSKI---KASSGETVRQLTIRGHG 234

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ +    +   L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|226944184|ref|YP_002799257.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226719111|gb|ACO78282.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 305

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V   G F+ AA    ++ S++S+ +S LE  +G +L  R  R L LT +G   
Sbjct: 13  ELEVFVRVIELGGFSAAARAFGMTPSAVSKLVSRLEQRLGTRLVNRSTRQLQLTPEGCAF 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   LE  +         P G+LR+   +  G   L     +FL  +PD+ + +
Sbjct: 73  YERGVRILADLEEAER-CAGEHTAPRGRLRVNANVPFGHRFLLPLTPKFLERHPDVTLDI 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ IDI     D A+R   P++SS+L+ RKL    M    AP YL +   P + Q+L
Sbjct: 132 VLTDEVIDILEQRTDVAVRAG-PLKSSNLMARKLGQTRMTIVGAPGYLAHHGTPTTPQDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +    +  +       L      I  P     Q +   ++ +  + G G+A L  
Sbjct: 191 LQHNRLGANYVRAQPGWP---LRHGGGDIVVPVTGNAQASDGEALHRLALAGLGLARLAA 247

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKA 294
           + V+++     L+ ++E+        V+  Y  +      +++AF +F+  + 
Sbjct: 248 FQVREDIAAGRLLPVLENCNPGDVEEVHAVYVGQGGYLPLRVRAFLDFLAERV 300


>gi|221214857|ref|ZP_03587826.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221165396|gb|EED97873.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 324

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 135/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEGALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +T    +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEAQTAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L  
Sbjct: 121 RYPEVKVHIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL  ++L     +    +  + +  FN +A             L     ++I +  +
Sbjct: 181 NAPPLVPEDLAHFETLDTPSVDGRHV--FNLIAPDGTRHVHEHDPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|167562996|ref|ZP_02355912.1| transcriptional regulator [Burkholderia oklahomensis EO147]
          Length = 313

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 129/296 (43%), Gaps = 5/296 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP+
Sbjct: 61  AGERYLQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYQQRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++N   P 
Sbjct: 121 VHVDLTLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGVTFSVVCASRGYIENHGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +          +++  +               +VN   ++      G GI
Sbjct: 181 RPQDLANHVCLGMV-APGLYWDEWKLMGPRGEESVTLAPPPFRVNVAEALAAGIREGMGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP Y       N + VR+M +  +    +Y  Y        K++ + +F+  + 
Sbjct: 240 GVLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALYASRQYLDAKIRTWVDFLRDEL 295


>gi|148257375|ref|YP_001241960.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146409548|gb|ABQ38054.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 305

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 131/293 (44%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L V   VA SGS + AA  L +S + +++ ++ LE  +G KLF+R  R LT+TE G 
Sbjct: 5   LTGLEVLSKVAGSGSLSGAARLLGMSPTMVTKHLAALEARLGAKLFHRTTRRLTITEAGR 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +   +   V    E  +  +    V+P G LR+   +  G   +   L  F  LYP + +
Sbjct: 65  RYLDLAERVLGDFEAAESAIAADRVEPRGLLRLNVPLAFGTRQIAPLLARFAALYPGVSV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L+++ +D+  +  D AIR+   ++ SSL+ R+L    M   AAP YL+    P    
Sbjct: 125 ELGLNDRLVDLIEEGWDLAIRIG-TLKDSSLVARRLAPCRMMICAAPSYLEAHGTPRRTA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +            W       I       L+ N+  +++   + G G+   
Sbjct: 184 DLADHNCLGY---TLAAAGPSRWRMGGKTAIDVTVSGNLRANNGDALLAAALAGQGLIYQ 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P +IV D      LV +  DV       V+  Y      + K++AF +++   
Sbjct: 241 PTFIVGDEVRAGRLVPLRLDVPPSELLAVHAVYLPDRTPSAKVRAFIDYLAAA 293


>gi|309778713|ref|ZP_07673486.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308922421|gb|EFP68045.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 304

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 140/298 (46%), Gaps = 11/298 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R+F  V  +G FT AA  L+ SQ  +S+ I+ LE  +G++L +R  R   LT +G + 
Sbjct: 8   EMRIFKAVVEAGGFTAAAHALNASQPFVSQTITHLERRLGVQLLHRSTRKQRLTSEGERF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   +E  + +++    +P+G LR++     G + +   L  FL  YP + ++ 
Sbjct: 68  LASCHDLLEAVEQAEAQIRA--TEPTGDLRVSVPQAFGIDQIVPALPGFLSTYPKLTVRF 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +++  D  D A+R+ + +Q SSL  RKL  +     AAP YL     P++ Q L
Sbjct: 126 SLSDSLVNLIEDNFDVAVRMGR-LQDSSLRSRKLCELQRIVVAAPSYLARHGMPVTPQGL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D+H  + + D   + +  + ++    +P         +     ++ + CV G GI  L +
Sbjct: 185 DRHQCLLW-DAPREHLNQWPFMMN-GKPEKFLVRGGFRSTDGSTLFELCVAGIGIMRLAE 242

Query: 247 YIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD--WK 298
           ++      +  LV ++ D        +Y  Y    +   +++AF ++     R   W+
Sbjct: 243 HLALPAIRSGKLVPLLSDYQAQDDTAIYAVYLPERQLVPRIRAFVDYFVEVFRQPPWQ 300


>gi|209516343|ref|ZP_03265200.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503279|gb|EEA03278.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 314

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  G F  AA +L  S +++SR I+ LET +G +L  R  R + LTE
Sbjct: 1   MDTLQCIRIFVKVASDGGFASAARRLKFSVAAVSRAINQLETHLGSRLLNRTTRQVALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  R   E+   L+  + E + ++  P+G+LR+      G  L+   + ++   + +
Sbjct: 61  AGERYLRRCEEILSSLDDAEAEARSATANPTGRLRVHALSSFGHQLVVPAILKYQQRFSE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + +     D+  D  D +I L   + SS L+  +L +I     A+P YL +   P 
Sbjct: 121 LRVDVTMSGTIPDMLEDGYDASIVLAPELPSSGLVSLRLGSIPGVVCASPRYLASHGVPK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVLGS 239
           + ++L +H  +    L         W+      +    I    L VN+  ++      G 
Sbjct: 181 TPEDLREHQCL---QLTTSVFPFDKWVFGGAGELSPVNIGSARLTVNAMEALEPAVAGGL 237

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+A+LP  I      +  LVR++    T    VY  YP       K++ F + +  + 
Sbjct: 238 GVAILPAGIALPGLRSGALVRLLRGYETQPVNVYALYPSRRFLDAKIRTFIDLLREEV 295


>gi|161524251|ref|YP_001579263.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350992|ref|YP_001946620.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221198508|ref|ZP_03571554.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221208542|ref|ZP_03581543.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|160341680|gb|ABX14766.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335014|dbj|BAG44084.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221171533|gb|EEE03979.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221182440|gb|EEE14841.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 324

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEGALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L  
Sbjct: 121 RYPEVKVHIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL  ++L     +    +  + +  FN +A             L     ++I +  +
Sbjct: 181 NAPPLVPEDLAHFETLDTPSVDGRHV--FNLIAPDGTRHVHEHDPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|116249208|ref|YP_765049.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253858|emb|CAK12253.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 298

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/292 (30%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + V   V  SGSF  AAE + LS S +SR IS LE  +G++L  R  R + LT+ G+
Sbjct: 7   LNGVSVLAAVIESGSFARAAELMGLSASGVSRAISRLEGRIGLRLLDRTTRTMRLTDDGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++  + +   +E        +     G+LR+       + +L   L  FL  YPDIQI
Sbjct: 67  RFYQQVAPLLSGIEEAAQTAVGARQAVRGRLRVNVDPYFSRLVLGPRLGAFLDRYPDIQI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I  N+  D+  D  D A+R  +P Q S LI R L+   +   AAP Y++    P   Q
Sbjct: 127 EVITRNEIGDLVADGMDVAVRFGEPAQRS-LISRLLMQTRVITIAAPVYIERHGRPGRPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I F D  P     F W L   +  +     S + VN   + +  C+ G GIA 
Sbjct: 186 DLSEHTCIQFQD--PLTARPFEWELRRREEVVSIETRSRILVNDAGTTLATCLAGIGIAQ 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +    + D   N  LV +  D    +F +Y  YP       K++AF +F   
Sbjct: 244 VFSLGMADYLNNGQLVNLFPDWSDETFPLYAFYPSRQHVPAKVRAFIDFCVE 295


>gi|91795092|ref|YP_564743.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91717094|gb|ABE57020.1| transcriptional regulator, LysR family [Shewanella denitrificans
           OS217]
          Length = 301

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 130/298 (43%), Gaps = 6/298 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F   A  G F+ A   L + +S +SR+I+ LE  +G+KL YR  R   +T+ G
Sbjct: 3   DLNDFYYFVKTAEYGGFSPAGRALGIPKSKLSRRIALLEERLGVKLIYRSTRQFKVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       +  + E  +  ++  + +PSG +++   I L    ++  L +F+L YP+I 
Sbjct: 63  LKFLEHCKAMLIEAEAAEDVIKSITSEPSGTIKLTCPIALLNAHIRYVLADFMLKYPNIV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S LI + L        A+P  +     P  
Sbjct: 123 IHLEASNRRVDLISEGVDIAIRVRPPPLEDSELILKVLSDRGRRLLASPSLVDKYAMPSK 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +   +  G+  P+    +         I             L++ +  V G G+ 
Sbjct: 183 PCDLAEWPSLGLGE--PQYQHSWTLYGPDGDAINLNHSPRYVTTDMLALREAAVKGVGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LLP  +  +   + +L+ ++ + +     ++  YP        ++A  +F+    R +
Sbjct: 241 LLPSILATEQLKDGSLIHVLPEWLPKREIIHLVYPSRRGMLPSVRALIDFLSEYYRSF 298


>gi|17546079|ref|NP_519481.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428375|emb|CAD15062.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 309

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS
Sbjct: 4   FKQLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + + L   +  +    VK SG LR+      G+  +   + +FL  +PD+ I
Sbjct: 64  AFLEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL+    P  ++
Sbjct: 124 TLDLGDRIVDLVNEGFDCAIRLGD-LPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + FG           W+          ++   ++      + ++C+ G G+A 
Sbjct: 183 QLAGHNCLAFG---ASANVQRGWVFQQGGKTVTVKVGGTMECTDGAVLREWCLQGHGLAW 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V  +     LV +++    P   ++  +P+      +++   +F+
Sbjct: 240 RSWWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLLIDFL 289


>gi|225851601|ref|YP_002731834.1| LysR family transcriptional regulator [Brucella melitensis ATCC
           23457]
 gi|256264890|ref|ZP_05467422.1| bacterial regulatory protein LysR [Brucella melitensis bv. 2 str.
           63/9]
 gi|225639966|gb|ACN99879.1| transcriptional regulator, LysR family protein [Brucella melitensis
           ATCC 23457]
 gi|263095344|gb|EEZ18971.1| bacterial regulatory protein LysR [Brucella melitensis bv. 2 str.
           63/9]
 gi|326408072|gb|ADZ65137.1| LysR family transcriptional regulator [Brucella melitensis M28]
 gi|326537788|gb|ADZ86003.1| transcriptional regulator, LysR family protein [Brucella melitensis
           M5-90]
          Length = 297

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G
Sbjct: 5   NLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +P+I 
Sbjct: 65  ERLLAQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPNIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   
Sbjct: 125 IELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   E F W  +   + I       L   S   ++Q C+ G G+A
Sbjct: 185 QDLSDHDCINL--RLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP        ++  LV ++ D        +  YP   ++   L A    +
Sbjct: 243 YLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEAL 293


>gi|187920033|ref|YP_001889064.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718471|gb|ACD19694.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 301

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 3   FDWDK-LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + VF  V  + SF+ AA+ L + ++S+S  +  LE+ +G++L  R  R + +T+
Sbjct: 1   MDLLQGMAVFKRVVDASSFSKAADSLEMPRASVSTVVQNLESHLGVRLLNRTTRRVQVTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   + +  ++   +  L      P G +R+ T+     ++L   +++F   YPD
Sbjct: 61  DGALYYEYCARILAEVSDAESALSSKRQSPRGTVRVDTSATFAAHVLIPVMRDFNARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L ++++D+  +  DC IR+   +  S+L+ R L ++ M   AAP YL+   EP 
Sbjct: 121 ITVKLGLADRNVDLVQEGVDCVIRIG-VLDDSNLVARSLGSVRMTICAAPAYLEQMGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +LD+H+ + +       +       +    I  P    L VN     +   V G G+
Sbjct: 180 TPDDLDRHHAVNYFSARTGRVYPME-FESDGVLIKRPIEGKLAVNEGQVYVASAVEGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P ++     ++  L  I+ D       +   YP     +  ++ F  ++  
Sbjct: 239 IQTPRFMAAKAIESGALREILRDCHCAPLPLSILYPHRR-LSMSVRVFSEWVHE 291


>gi|159186538|ref|NP_396136.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141598|gb|AAK90577.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 137/291 (47%), Gaps = 11/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  V  +GS   AA +L +++S +SR+IS LE  +G  L  R  +G  LT+ G + 
Sbjct: 11  DLISFIRVVETGSIAGAASRLGIAKSIVSRRISRLENFLGATLLTRSQKGTALTDVGREY 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H   +    +LE+ Q  +  S+ + SG++R++  +  G+  L   L EF LL+P I   +
Sbjct: 71  HLRAASGLAELESAQEMVVRSTTEASGQVRVSVPVAFGEFCLAPLLAEFALLHPRIHFDV 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++  D+  +  D A+R+   I  S LI RKL  +     A+P YL+    P    EL
Sbjct: 131 RFEDRQPDLVAEAYDLAVRIGS-IPDSVLITRKLAKVRWAVVASPSYLEARGRPSKPSEL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             HN I +        + F W         + R+ S  + ++   ++     G GI +LP
Sbjct: 190 AAHNAILYS------FDTFGWRFQGPDGWEQVRVNSQFRSDNGQMMLSAARAGLGIVVLP 243

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++V++   + +L  ++         ++   P A     +++A  NF++ K
Sbjct: 244 VFMVQESLASGDLEEVVPGYSHAGADLHILMPPARAGIARVRALVNFLYEK 294


>gi|134293556|ref|YP_001117292.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136713|gb|ABO57827.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 317

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 122/296 (41%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD
Sbjct: 61  AGENYLRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPTLTRYHAQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A+P Y+     P 
Sbjct: 121 VSIELSLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPEYVTRHGAPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  +T         E    L   D          +Q N+  S+      G GI
Sbjct: 181 HPTDLGAHACLTLCTPAFPTHEWV--LEGADGVEQIHVAGPVQTNTAESLALAIRDGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP Y   D   +  LVR++   I     VY  YP       K++ +   +  + 
Sbjct: 239 GMLPLYSAIDALQDGTLVRVLPSHILQKMNVYALYPSRRFVDAKVRTWVEMLRAQV 294


>gi|283833315|ref|ZP_06353056.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291070953|gb|EFE09062.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 297

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L    +VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLYYLIIVARERSFTRAAAKLGVSQSALSHAIRGLEERLDVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S  +  +ET  + L +   + +G +R+       Q+ +   L+ FL  YPD+ 
Sbjct: 65  ERLINSISPRFDDIETELLALTDVRQRVAGNIRLTLGEHALQSTVWPALEPFLQAYPDVN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ LDN   DI     D  IRL + +    +  R      M    +P Y     +PL+ 
Sbjct: 125 VEMTLDNSLTDIVAGRYDAGIRLGEQVAKDMVAVRIGPDWRMVVVGSPAYFSRHGKPLTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L KHN I     +P     + W  +        R+   L  N+    +   + G G+A
Sbjct: 185 HDLQKHNCINL--RMPTLGGLYAWEFSKRGQDLRIRVEGQLIFNNLPPRISAAIAGIGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V+    +  L +++ED   P    Y  YP   ++T         +
Sbjct: 243 FVPEDSVEQAVADGALEKVLEDWCEPFQGYYLYYPSRRQHTAAFAQLIEAL 293


>gi|148559455|ref|YP_001258105.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148370712|gb|ABQ60691.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840]
          Length = 297

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G
Sbjct: 5   NLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI 
Sbjct: 65  ERLLAQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   
Sbjct: 125 IELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   E F W  +   + I       L   S   ++Q C+ G G+A
Sbjct: 185 QDLSDHDCINL--RLPTHGEFFAWTYSRHGKDIRITAQGRLVFTSIAQVLQACLAGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP        ++  LV ++ D        +  YP   ++   L A    +
Sbjct: 243 YLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEAL 293


>gi|293610195|ref|ZP_06692496.1| transcriptional regulator [Acinetobacter sp. SH024]
 gi|292827427|gb|EFF85791.1| transcriptional regulator [Acinetobacter sp. SH024]
          Length = 298

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +  +F  VA+  SF   A QL L +S+++  I  LET  G++LF+R  R ++LT+
Sbjct: 1   MDRLQQFFIFTEVAKRQSFIEVANQLDLPRSTVTSAIQQLETHYGVRLFHRTTRKVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    E  +  +Q       G L+I+    +   ++   L +F   YPD
Sbjct: 61  DGQRILPECQNLLFDYEQLEQLIQAQKQHYRGTLKISMPSRIVHQVIIPELPDFYSRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL   +   D+     DC +R+ + + +SSLI + +  + M   A+  YL+    P 
Sbjct: 121 IHLQLHSSDDITDLIEKGIDCVVRVGQ-LDNSSLIAKFVGNLIMVNCASADYLEQYGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L +H LI +   + +    F++     +       S L VN+  + +     G GI
Sbjct: 180 QLEDLSQHKLINYAGAVGEKQGVFSY-----QDGAVMMDSALSVNNTEAYIAAASAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP Y V+D      LV ++      S  +   YP       +L+ F  +    ARD
Sbjct: 235 IQLPYYDVQDKIEQGTLVEVLSAYTAQSLPLNILYPNRSYIPKRLEIFMEW----ARD 288


>gi|221196488|ref|ZP_03569535.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203157|ref|ZP_03576176.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221177091|gb|EEE09519.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183042|gb|EEE15442.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 315

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 125/296 (42%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YP+
Sbjct: 61  AGENYLRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPALTRYHAQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A+P Y++    P 
Sbjct: 121 VSIELSLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVRRHGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             QEL  H  +T         E    L   D          +Q N+  S+      G GI
Sbjct: 181 RPQELAAHACLTLRTPAFPTHEWV--LEGPDGVEQIHVSGPVQTNTAESLALAIRDGIGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP Y   D   +  LVR++ + I     VY  YP       K++ +   +  + 
Sbjct: 239 GMLPLYAAIDALSDGTLVRVLPEHILQKMNVYALYPSRRYIDAKVRTWVELLRAQV 294


>gi|148262047|ref|YP_001236174.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146403728|gb|ABQ32255.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
          Length = 313

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 126/296 (42%), Gaps = 11/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  VA  GSF+  A   + SQ  ISRQI+ LE ++G++L  R  R L+LTE
Sbjct: 1   MDQLSLINTFIRVAERGSFSAVARDFNTSQPVISRQIAALEDQLGVRLIQRTTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V   ++     +  +   P+G++R+     +G   L   L EF   +P+
Sbjct: 61  DGQTYLEHAKAVVDAMDAANASVGSARKTPTGQVRLGVPTAVGLY-LAARLPEFFARHPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L + +   D+  +  D  I + +  Q+S +I R L T      A+P Y+     P 
Sbjct: 120 ISLDLKMRDGAFDLIEEGLDLVISIAEATQAS-VITRVLGTATSVLVASPAYVAARGAPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           + ++L KH  I +     +   D  W    D       +     V+S  ++ +    G G
Sbjct: 179 TPRDLLKHECIVYT----RPGADREWRFARDGVEESVNVQGRFHVDSSEAVRRAARAGLG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IALLP     D+     L+ +++  +     ++   P       + +A  +F+  +
Sbjct: 235 IALLPRLTTIDDVAAGRLITVLDAFVPMQVKIHAILPSRRYVPARTRAILDFLREE 290


>gi|306842646|ref|ZP_07475293.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306287216|gb|EFM58709.1| LysR family transcriptional regulator [Brucella sp. BO2]
          Length = 297

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G
Sbjct: 5   NLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++ +   ++ E   +P+G +R++      Q++L   L+ FL  +PDI 
Sbjct: 65  ERLLAQVGPALAEIASGFAQIGELRERPAGTVRLSADEYAIQSVLWPALERFLAEFPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   
Sbjct: 125 IELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   E F W  +   + I       L   S   ++Q C+ G G+A
Sbjct: 185 QDLSDHDCINL--RLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP        ++  LV ++ D        +  YP   ++   L A    +
Sbjct: 243 YLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEAL 293


>gi|205354776|ref|YP_002228577.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274557|emb|CAR39606.1| hypothetical lysR-family transcriptional regulator [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
          Length = 299

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 6   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 66  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 126 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 185 ASHAVVHYS-LTPGVSSPGFAFETPYGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         +   YP     + ++  F  ++    ++
Sbjct: 244 IAVREALRAGTLIEILPQYRAAPLPMTLHYPHRRNLSRRVHLFMVWLTESIKE 296


>gi|170694602|ref|ZP_02885754.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140484|gb|EDT08660.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 314

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 138/314 (43%), Gaps = 20/314 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVSVIDSGSITAAAEKLGQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGEGFLQRARAILDAMEEAEESVARKRRRPSGRLRVDAASPFMLHCIAPHMTAFSALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L    + +D+     D AIR+   +Q S+L  R L +  +   A+P YL    EP
Sbjct: 121 EIRLELTSSERIVDLLEQKVDIAIRIGA-LQDSTLHARALGSSKLRVVASPAYLAEHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWL-----------ATVDRPIGEPRI----SCLQV 225
            S+  L +H LI F                             R  G+P        +  
Sbjct: 180 KSVDALREHRLIGFTAPEHLNRWPLRERGKRAGKGTSASGRAGRAGGKPEPLKIEPSITA 239

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTG 281
           +S  ++ Q  + G GIA L D++      +  LV I+  V+      V   Y ++    G
Sbjct: 240 SSGETLRQLALSGWGIACLADFMTAADIRDGRLVPILGHVLLDERQPVSAVYYQSASLAG 299

Query: 282 KLKAFRNFIFLKAR 295
           +++ F +FI ++ R
Sbjct: 300 RVQCFLDFIAVRVR 313


>gi|88857152|ref|ZP_01131795.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
 gi|88820349|gb|EAR30161.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
          Length = 315

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 139/298 (46%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+  +++L+   VF  V   G+ T AA+ + LS++ +S  +  LE+++G+KL  R  R L
Sbjct: 1   MNVSFEQLKSMVVFAQVVEQGNLTAAAKHIGLSRAVVSYHLKKLESQLGVKLLNRSTRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT+ G++ ++    +  +      +++    +P G L+I   +++G  ++   L EF  
Sbjct: 61  SLTQAGNEYYQSCRIIAEQATLANQQMENLKHEPEGLLKITCPVNVGLQMVVPALNEFRR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP I++ ++L ++ ++I  +  D AIR   P+  SSL   KL T+      AP Y K  
Sbjct: 121 LYPKIELDVMLTDEVVNIMQEGIDLAIR-GAPLVDSSLQASKLSTLATCLCGAPDYFKKR 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P +  +L++H+ + +             L+   R         +  N+  +   +   
Sbjct: 180 GRPTTPTDLEQHDWVIYKLTSGAIK-----LSKGSRSYSVAVKGTISTNNAAARTAFIEG 234

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G G+  +P Y          L  I++D    +  +Y  +P    ++ KL+   +++  
Sbjct: 235 GHGLGRIPVYDAWPKIQAGTLETILDDYQLSNIDIYGVFPPGSASSKKLRLLIDYLKE 292


>gi|241662987|ref|YP_002981347.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240865014|gb|ACS62675.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 300

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 125/292 (42%), Gaps = 10/292 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS + AAE L +S++ ++R ++ +E   G +L +R  R + LT  G     
Sbjct: 8   EVFVAIVERGSLSAAAEALGMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTPAGEATLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++        +     +  P G LRIA    L Q  L   +  +L  YP   + L++
Sbjct: 68  RCRQMLEIASQMAVADGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQTAVDLVV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           DN+ I++  +  D A+R+   +   +LI R L        AAP YL     P  + +L  
Sbjct: 128 DNRTINLVEERIDLAVRITNDL-DPNLIARPLGLCESVVVAAPSYLAAHGTPRRVPDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K +  F   A    P   P    L  N  + ++     G+G+AL P + 
Sbjct: 187 HNCLTYS-YFGKSLWKFT-EAKTGAPSDVPVGGNLSANESMVLLAAAREGAGVALQPVFA 244

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 +  LVR++ D +  +  ++  Y    +    L+A  +F+     DW
Sbjct: 245 AAPLIASGQLVRLLPDHVPQALGIHGVYSSRRQMPAALRAMLDFLV----DW 292


>gi|326629917|gb|EGE36260.1| LysR substrate binding domain-containing protein [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 300

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 7   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 67  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 127 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 186 ASHAVVHYS-LTPGVSSPGFAFETPYGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         +   YP     + ++  F  ++    ++
Sbjct: 245 IAVREALRAGTLIEILPQYRAAPLPMTLHYPHRRNLSRRVHLFMVWLTESIKE 297


>gi|167584325|ref|ZP_02376713.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 322

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++P+GK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGQRYFERAKSILAEIDYANAEARNALLRPTGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L KH  +          E        D  + E   +  QVN   ++      G G
Sbjct: 180 QTPEDLPKHTCLRLDTPASPASEWRLEHKDGDEQVFELPPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F   +
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTLSVYAVYATRRYLDAKIRTFLEHL 292


>gi|70728384|ref|YP_258133.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342683|gb|AAY90289.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 322

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAEAGSFTAAAVQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ T   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILAYVEEAEAEASDAHARPAGQLKVHTMTGIGQHFVIDAIARYRKTHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + N+  D+  +  D +I L + +  S  + ++L   +    A+P Y+K    P 
Sbjct: 121 VTFDLTMANRVPDLLDEGYDVSIVLARELPDSGFVSQRLGMTYSIVCASPAYVKANGCPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  +     +   +E + +     + +     S   VNS  ++    + G G+
Sbjct: 181 KPSDLLNHACLRLVSPVIP-LEKWTFDGPEGQEMVTINSSPFLVNSADAMKTAIISGMGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP Y   +      LVR+M    +    +Y  YP       K+K +  ++
Sbjct: 240 GVLPVYAAIEGLRTGTLVRVMPKYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|319791444|ref|YP_004153084.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593907|gb|ADU34973.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 301

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   +   L+V    AR G+ T AA  L ++ ++ S  +  LET++G +LF R  R + L
Sbjct: 1   MKIENTSDLQVLVHTARGGTLTAAAHALGITPAAASATLKRLETQLGARLFERSTRAMRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T QG  L       +  L+  +  +     +  G LR+A   DL ++ L     EFL L+
Sbjct: 61  TPQGQTLLDYAVRAFELLDEGESLVTADRGELVGTLRVAAPSDLTRSTLLPWFDEFLALH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
             +Q+ L + ++ +D+  D  D A+R    +  S L+ R     +    A+P YL     
Sbjct: 121 SGVQLSLSVGDRPLDVMRDEVDVALRYGA-LADSRLVARPFAMTNPLLTASPEYLSRHAA 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLG 238
           P + Q+L  HN + F            W    +    E R++  + V+      ++ V G
Sbjct: 180 PKTPQDLVHHNCLIFN---RGGRRHRVWRFAQNGQWTEVRVNGNRSVDDASLAREWAVAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI L     V+D+     LV++M D  T  + ++   P       +++AF +F+ LK
Sbjct: 237 YGITLKSALDVRDDVRSGRLVQLMADWQTEPYPLHALLPSGRFVPARVRAFVDFLALK 294


>gi|148547762|ref|YP_001267864.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511820|gb|ABQ78680.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 303

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 134/294 (45%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F   A++GSFT AA  L L++S++ + I+ LE  + ++L  R  R L+LT++G 
Sbjct: 6   FGDIAAFVSAAKAGSFTAAAASLGLTRSAVGKSIARLEARMAVRLLNRTTRKLSLTDEGL 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++   L+  +  +     KP+G LR+   + LGQ  +   L ++L  +P+++ 
Sbjct: 66  VAFERWRQILDDLDEVESTMALRRGKPTGTLRLTAPLSLGQRHVLPILDQYLKQWPELRA 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  D A+R+  P + S L+ R +        A+P YL+    P    
Sbjct: 126 DIRFTDRFVDLVEEGVDVAVRIGAPKEDSQLLTRTVAWQQFVTCASPAYLEKRGVPQMPG 185

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L  H+ I F      +P        L   + P        L ++S  +++     G G+
Sbjct: 186 DLYGHDKIAFLAGEKAMPWRFHTEAGLHLCEDP------GRLNIDSSEAMLDGARAGFGL 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             LP YI  D+    NLV ++     P+  +   YP     + +++ F + +  
Sbjct: 240 IHLPTYITGDDLRAGNLVEVLHAYRPPADPIRIVYPSKRHLSPRVRGFIDLLVA 293


>gi|256112563|ref|ZP_05453484.1| transcriptional regulatory protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265994005|ref|ZP_06106562.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|262764986|gb|EEZ10907.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
          Length = 297

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G
Sbjct: 5   NLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI 
Sbjct: 65  ERLLAQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   
Sbjct: 125 IELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   E F W  +   + I       L   S   ++Q C+ G G+A
Sbjct: 185 QDLSDHDCINL--RLPTHGEFFAWTYSRHGKDIRIMTQGRLVFTSIAQVLQACLAGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP        ++  LV ++ D        +  YP   ++   L A    +
Sbjct: 243 YLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEAL 293


>gi|91782473|ref|YP_557679.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686427|gb|ABE29627.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 314

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 134/299 (44%), Gaps = 7/299 (2%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D   +L  F ++AR G+   AA  L L+  + +++++ LE  +G++L  R  R ++L
Sbjct: 1   MKTDITSQLEFFVLLARHGNLAAAARALDLTPPAATKRLAQLEARLGVRLANRTTRSISL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G       + +  +++  +  +  S   P G LR+  T+  G+  +   + +F   Y
Sbjct: 61  TPEGETYLHHATRILAEIQEMEEAVSSSRSAPRGLLRVNATLGFGRTTIAPLVSQFAERY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++QL + ++ ID+     D AIR    +    L  R +++      A+P YL+    
Sbjct: 121 PHVEVQLDVTDRPIDLVESGVDLAIRFGS-LPDKRLNARCVMSNRRFLCASPRYLERHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+ +L  H+ I               LA  +          L  N    ++ + + G 
Sbjct: 180 PTSLADLAGHHCIVHRQNDDAHGIWR--LAHGNHSETVKVHGMLSSNDGDIVLSWALDGH 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI L  ++ +    ++  L  ++ + + PS  ++  YP     + + +AF +F+  + +
Sbjct: 238 GILLRSEWDLARYLESGRLRIVLPEFVQPSADLFVYYPNKRNQSARARAFIDFLVERFK 296


>gi|27381641|ref|NP_773170.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27354809|dbj|BAC51795.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 298

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L  F  VA+  SFT AA +L + QS++S  I  LE ++GI+L  R  R + LTE G
Sbjct: 5   DFNDLLWFLTVAKERSFTKAAAKLGIGQSTLSHTIKRLEDQMGIRLLTRTTRSVGLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    ++E    +L     KPSG++R+  +    Q+++   L+  L  YPDI+
Sbjct: 65  ERLRLSMAPRIAEIEAEIADLMAFRDKPSGRIRMTVSEHALQSVVWPKLQPILKDYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L LDN   +I  D  D  +RL + ++   +  R      + A  +P Y      P   
Sbjct: 125 LELSLDNGFRNIVEDGFDAGVRLGESVEKDMVAVRIGPDWRLVAVGSPGYFAEHGVPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L +HN I     + +    + W    D      R+   L  N+  +     + G GIA
Sbjct: 185 HDLVRHNCINL--RLERAGGLYAWEFAKDGQELRVRVDGQLTFNTSYAQADAALKGYGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+ +V+ +    +L  +++         +  YP   +N+   K   + +  +
Sbjct: 243 YVPENVVQRHIMSGDLALVLDKWSPVFDGYHIYYPSRRQNSPAFKVIVDALRHR 296


>gi|121726627|ref|ZP_01679863.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147672094|ref|YP_001215024.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|262168889|ref|ZP_06036583.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|121630933|gb|EAX63313.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|146314477|gb|ABQ19017.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|227015702|gb|ACP11911.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|262022588|gb|EEY41295.1| transcriptional regulator [Vibrio cholerae RC27]
          Length = 301

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 132/292 (45%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P
Sbjct: 125 EVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +T                   + +  P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLAEHRCLT-----GSVKRWSYQHKETKQALEVPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|227329410|ref|ZP_03833434.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 293

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 130/294 (44%), Gaps = 12/294 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F  V  +GSF+ A+ +L + Q ++S+ I  LE ++   L  R  RGLT TE
Sbjct: 1   MDRLSALETFICVFETGSFSAASRRLGIGQPAVSKAIMQLENQLATPLLLRSTRGLTPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   +     L   Q  +   S   SG+LRI   +   + L+   L EF+  +P 
Sbjct: 61  AGQNFYEQIAPALKVLGDAQEHVVSGSTALSGRLRIGAPVTFARQLIIPRLHEFMAEHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I +ILD++ ID+  +  D A+RL + ++ SSLI ++L +  M   A P Y      P 
Sbjct: 121 LNIDVILDDRPIDLIAEGIDVALRLGE-MKDSSLIAQRLASCSMRLLATPDYFARHGVPD 179

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S   L  H  + +  G+   + +   N   T   P G  R+S         +    + G 
Sbjct: 180 SPDVLAAHPAVIYLQGERTDRWIFSRNGTQTTVFPNGRIRVSA-----AEGVRAAVLSGV 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ +  +++     ++  +V  ++        ++  YP     + + + F +F+
Sbjct: 235 GLIVASEWMFAPELESGQVVTALDSWSLGKMDLWAVYPGGRMTSARARIFTDFV 288


>gi|167854757|ref|ZP_02477536.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
           29755]
 gi|167854171|gb|EDS25406.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
           29755]
          Length = 285

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 131/291 (45%), Gaps = 11/291 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V  + SFT AA+Q  +S +  S+ ++ LE  + ++L  R  R ++ TE
Sbjct: 1   MDKLKAINLFCKVIETQSFTQAAQQEQISLAMASKLVAQLEEHLNVRLLQRTTRRISPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + ++L+  +  +   +    GKL ++  +D G   +  +L  F   YP 
Sbjct: 61  AGLLFYQRCQPILNELKDAEACVTNITSTLQGKLTMSLPMDFGSRFVAPHLHRFTETYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ +D+  +  D  +R+ K ++ SS++ +++        A+P Y +    P 
Sbjct: 121 LQLNLEFSDRRVDVVAEGYDLVLRIGK-LEDSSIVAKRIAQAQHLIVASPRYFEKFGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL +H  + +     + +  FN        I     S +  N+  +++Q    G GI
Sbjct: 180 TAWELQQHQCLLYES---QTLWQFN---ENGHQIKLKPQSQVYSNNGYALVQMARAGHGI 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +P +++KD   +  L+ I+  +      +   YP     + K+K    F
Sbjct: 234 INIPKFLLKDELASGELIPILPHLEQELSDISLLYPNRRYLSPKVKVTIEF 284


>gi|261492013|ref|ZP_05988588.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261312296|gb|EEY13424.1| putative LysR family transcriptional regulator [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 296

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 139/292 (47%), Gaps = 4/292 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + LR F +VA++ SFT AA Q+ +SQS++S  I G+E  + IKLF+R  R ++ T
Sbjct: 1   MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEERLQIKLFHRTTRSISTT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L++    ++ +++     L E      G LRI     + +++L     EF+  YP
Sbjct: 61  EAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEHVFRDVLADKFAEFVKRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L+ +++ +DI  +  D  IRL   +    +  R      M A A+P+YL     P
Sbjct: 121 EVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRISPDAKMTAAASPNYLAQHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
            +  +L +H+ +         +  + +   + + I +      L  N+   +  Y   G 
Sbjct: 181 KTPFDLTEHHCLKHRLATLGGILAWEFRDPITKKIVKFQPQGNLTANNGFLLQHYAKQGL 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GI   P   ++   DN +LV I+ D        +  YP   +N+  LKA  +
Sbjct: 241 GILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLYYPNRRQNSPLLKALID 292


>gi|330950551|gb|EGH50811.1| LysR family transcriptional regulator [Pseudomonas syringae Cit 7]
          Length = 303

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD + + +F  V RSGSF  AA  L +  ++ISR++  LE ++  +L  R  R L LT
Sbjct: 1   MVFDLNDVALFVQVVRSGSFAQAARHLGMPSNTISRRVQQLEMQLDTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +         +     +L     +P G +RIA   D         + +FL  YP
Sbjct: 61  QAGEDFYGRCVGAVDGVMEAAEQLASGRDEPGGLVRIAAMADFFDFFSMDWVADFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCRE 179
            +Q++ +L +   D+  D  D A R   P+Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDDHADLIADRLDIAFR-GGPLQDSGYVGRQLIDESHDTMVASPTYIAAYGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+Q L  H  ++        +  +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLQSLHSHYCVSAAH--RGGVTAWRLLGPDAKMHEVHIASRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K RD
Sbjct: 238 GIALLPATLIRSDLRDGRLVPVLAQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDKLRD 297


>gi|330502079|ref|YP_004378948.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328916365|gb|AEB57196.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 318

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 128/294 (43%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V   GSFT AA+ L LS + +SR I+ LE  +  +L  R  R L LTE G
Sbjct: 3   TLHAMRVFIQVVERGSFTAAAQALDLSTAQVSRLIADLEQHLQARLLQRTTRRLALTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +    + ++  +++    E + + + PSG+LR+ T   LG   L   +  +   Y  + 
Sbjct: 63  ERYLERSRQILGQIDEADAEARGAHLTPSGRLRVHTMTGLGLQHLTPLIARYAERYRQVV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L  +  D+  D  D  +   + +  S L+ ++L  ++    AAP YL         
Sbjct: 123 VELTLAQRTPDLLEDGHDVTVAFARDLPDSQLVAQRLGPVYSVLCAAPSYLAKHGIAQRP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +   D + +   DF      D  +      C QVN   ++++    G G  L
Sbjct: 183 SDLQQHRYLRLTDPLYRGQWDFG-----DEQLDVLPAECFQVNVAEALVKAAQAGMGFCL 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP ++         L+RI+      +  +Y  YP       K + + +F+  + 
Sbjct: 238 LPSFVASQPLREGRLLRILPQHRLRALNIYAMYPSRRFLDAKTRTWVDFLKAEL 291


>gi|241664729|ref|YP_002983089.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240866756|gb|ACS64417.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 303

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 57/292 (19%), Positives = 122/292 (41%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   GS   AA    ++   I R+I+ LE  +G+KL +R  R + +TE
Sbjct: 1   MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVKLLHRSTRRIAVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG+       +   +L+  ++ + E   K +G L ++     G+  +  +  +FL   PD
Sbjct: 61  QGAVFMEQCKKALGELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPDFLRANPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I   L ++ +D+  +  D  IR+   I   + +  +L +        P Y      P 
Sbjct: 121 VRISFNLTDRVVDLVREGYDVGIRIGGAI-DPNFVAIRLASNKRVVCGTPAYFSKHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +HN + F     +    +       + +       L  N    + ++   G G+
Sbjct: 180 TLDDLARHNCLAFNLQGGQQRGWY--FQQNGKAVTVKVNGNLDCNDGELLHRWMGEGLGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                + ++   ++  L+ +++D   P + +   YP+      K++ F   +
Sbjct: 238 GWRSTWEIQPELESGALMTVLDDYALPDYDILAVYPQQRPVPAKIRFFIEHL 289


>gi|172063243|ref|YP_001810894.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995760|gb|ACB66678.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 315

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 128/303 (42%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD
Sbjct: 61  AGESYLRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHTQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P 
Sbjct: 121 VSIELSLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPEYVKRHGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +T         E    L   +          +Q N+  S+      G GI
Sbjct: 181 RPQDLGAHACLTLCTPAFPTHEWV--LEGAEGVEQIHVAGPVQTNTAESLALAIRDGIGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----- 293
            +LP Y   D   +  LVR++ + I     VY  YP       K++ +   +  +     
Sbjct: 239 GMLPLYSAIDALRDGTLVRVLPEHILQKMNVYALYPSRRFVDAKVRTWVEMLRAQVPGMI 298

Query: 294 ARD 296
           ARD
Sbjct: 299 ARD 301


>gi|83718146|ref|YP_440220.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167616915|ref|ZP_02385546.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257140846|ref|ZP_05589108.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651971|gb|ABC36035.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 321

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MTIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGQLFYQHCQAMLSEAQAAMNAVQQLRSAPRGTVRVSVPVTLSQTMLSRLLPEFLR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            +P++++Q+ + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L+ 
Sbjct: 121 RFPEVRVQIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLQQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L + +  T           FN +A             L     ++I +  +
Sbjct: 181 NAPPLVPDDLSRFD--TLDTPSGDGRHVFNLIAPDGTRHAHEHEPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGVGIAALPESMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|148358484|ref|YP_001249691.1| LysR family transporter transcriptional regulator [Legionella
           pneumophila str. Corby]
 gi|148280257|gb|ABQ54345.1| transcriptional regulator, LysR family [Legionella pneumophila str.
           Corby]
          Length = 287

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  V     F  AA +  +S +++SRQI+ LE E+  +L  R  R L+LT+ G+
Sbjct: 4   FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   +   +L   +I +  S  +  G L + ++       L   L EF+ L P +QI
Sbjct: 64  RYYQQCKKTLLELNEAEIAIANSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123

Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  +  D++ +  D    + +  P     L+++++ T      A+P YL     P +
Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGP---PELVRKRVSTTRYVLCASPDYLAKNGIPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL KH  IT     P  +  F      ++   EP    L +N   ++ +  +LG GI 
Sbjct: 181 PSELGKHRYITHSMRNPDNLVTF---KDNEQIYVEP---VLWLNDSRALCECALLGMGII 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L +YIV +   +  L+ ++ +    S +VY  Y  +     K++ F +F
Sbjct: 235 KLHEYIVAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284


>gi|160901070|ref|YP_001566652.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366654|gb|ABX38267.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 302

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 126/286 (44%), Gaps = 12/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F     +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L+LT +G + +
Sbjct: 7   MSCFARAVETGSFSAAGRDLGLGQPNVSRYVAALEDHLQARLLHRSTRKLSLTPEGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++ ++   +  +V+PSG LR+A    L    +  ++  FL  YP + + L 
Sbjct: 67  ADIRRILDAVDESESSFRN-NVEPSGLLRVACPTALAHAFVLPHVPTFLERYPQLTLDLQ 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  + AIR+   ++ SSL  R+L        A+  YL     P +  +L 
Sbjct: 126 FNDRYVDLVNEGTEIAIRIGH-LEDSSLRARRLGWYDRVFVASKDYLAKRGVPQTPDDLR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ I +  L    +  F       R    P    L+VNS  ++      G G+A  P +
Sbjct: 185 DHDCIIYTLLSSGAIWRF-------RDADIPVSGRLRVNSPDAVSAAVTAGLGVAQGPAW 237

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +   ++  L  I+ D   P   V   Y        +   F +F+
Sbjct: 238 LFEGGLNSGRLQFILTDHAAPPVPVQIVYVANRLLPTRAVVFMDFM 283


>gi|152981603|ref|YP_001353709.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281680|gb|ABR90090.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 298

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 126/292 (43%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++ +F  +    SFT AAE L L +++++  ++ LE  +G +L  R  R +T T 
Sbjct: 1   MDRFQEMEIFVRIMERRSFTKAAEDLQLPRATVTNAMARLEERLGSRLLNRTTRLVTPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   +E      +     P G LR+     +  + L   L  F   YP 
Sbjct: 61  DGDAYYTRCVRLLTDIEEADGAFRN--TAPKGLLRVGVQGTVAAHFLVPTLPAFFARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++ +D+  +  DC +R   P Q SSLI R++  +   + A+P YL    +P 
Sbjct: 119 MELHMDESDRLVDLVREGIDCVLRGGTP-QDSSLIARRIAMLEQVSCASPAYLARYGQPR 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I++L KH  + +            ++    R       + + V          + G GI
Sbjct: 178 NIEDLTKHKAVNYISSASGKPFPLEFMVN-GRMQSIVLPTAISVTGTKVYTGCALAGLGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y ++    +  L +I+ D   P   +   YP+  + + +++ F  ++
Sbjct: 237 VQMPRYHIEQELQDGRLQQILPDTPPPGMPLSVLYPQNRQLSARIRVFSEWL 288


>gi|187919825|ref|YP_001888856.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718263|gb|ACD19486.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 304

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 133/300 (44%), Gaps = 13/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V  S SF+  A++LH +QS+IS+Q++ LE  +G  L  R  R L LTE
Sbjct: 1   MDKLSAMQTFVRVVESRSFSAVADELHATQSAISKQVAALERSLGANLLVRTTRSLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +       +  ++   +  L+    +  G +R+A  +  G+  L   +K F+  +PD
Sbjct: 61  EGERYFVQARRLVAEIAEAESALKTGEEQLRGWIRVAAPVGFGRLKLMPLVKSFMAAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC---- 177
           +++ L L +  ID+     D  +R+   +  S L+ R++ T      A   Y++      
Sbjct: 121 VRVDLRLHDSFIDLVDQGIDVTVRIGA-LDDSRLVARRVGTSQRMLLAHSDYVRALSPGS 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQ 233
             P+  ++L  H  I + ++       F   A      G  R       +Q NS   +  
Sbjct: 180 HAPVDPEDLLAHECIVYTEMSNSNSWTFTAGAGASATRGTLRSVRVAGHIQTNSSEVLRL 239

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V G GI   P ++ ++   +  +VR+M    +P   ++   P   K+  K++AF   +
Sbjct: 240 AVVTGMGIGYAPTWLFENELASGEVVRLMPYWESPQSPIHLVSPPERKHAAKVRAFVEHV 299


>gi|222082270|ref|YP_002541635.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726949|gb|ACM30038.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 300

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 141/294 (47%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF      G FT AA    ++ S++S+ IS LE  +G +L  R  R L LT +G   
Sbjct: 11  EMEVFVRAVELGGFTAAATACRMTPSAVSKLISRLEARLGARLINRSTRRLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +   +   +     +  + +G +RI T+   G ++L   +  F+ LYP + +++
Sbjct: 71  YERSIAILADIAEAER-YASAGEEAAGPIRINTSGSFGNHVLAPLIPSFMALYPAVSLEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +K +D+  + AD AIR   P+++SSL  RKL T      A+P YL+    P SI EL
Sbjct: 130 VHTDKVVDLMEERADVAIRTG-PLKNSSLTARKLGTTRKIIVASPDYLRRRGTPRSIDEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            KH  I F     + +E +  L +  + +  P    LQV+   ++    + G+G+A LP 
Sbjct: 189 QKHGRIGFA--YARAVEGWP-LLSAGKTMEVPVTPGLQVSDGEAMRHLALAGAGLARLPA 245

Query: 247 YIVKDN---PNLVRIMEDVIT-PSFTVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + VK +     L  ++ED+        Y  +  +      +++A  +F+    R
Sbjct: 246 FTVKADIEAGRLAPVLEDINPGDGEEFYAVHIGQGGPLPARVRALLDFLHDNVR 299


>gi|262375255|ref|ZP_06068488.1| transcriptional regulator [Acinetobacter lwoffii SH145]
 gi|262309509|gb|EEY90639.1| transcriptional regulator [Acinetobacter lwoffii SH145]
          Length = 299

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 140/299 (46%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F  V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLSDLDDFYCFAQVVEHGGFSAAERATDIPKSKLSRRVFNLEERLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    +    +     +   S +P G ++++  + + QN L   L  FL  YP
Sbjct: 61  DIGMNIYRHAQVMLSAAQAAHDLVDHLSTEPRGTIKVSLPVSIAQNELAKILPNFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++Q+++ N+ +DI  +  D A+R+R  +    +L+ R+   I  H +A+  YL    E
Sbjct: 121 EIKVQMMITNRRVDIINEGFDLALRVRSSLDDDPNLVIRQFEKIEQHLFASQGYLNEFGE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
             + ++L +H +++  +      E F  L    +   + R+S  +  +    + Q    G
Sbjct: 181 LKNPEQLAEHKILSMAE---DHTEQFLTLQNEQQEQKKIRVSPTVMGSDLNMLAQLAASG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           SG+ LLPD +V+    +  LVR++ D   P    +  YP        ++ F +++  + 
Sbjct: 238 SGVTLLPDNVVEQYVASGELVRVLPDWKAPHGIFHVVYPSRRGLLPAVRVFIDYLVAEL 296


>gi|170691642|ref|ZP_02882807.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143847|gb|EDT12010.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 311

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 140/291 (48%), Gaps = 10/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRQVVEVGSFVGAAERMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +LE  +  +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQVLTELEEAEQVVGAASVVPQGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R +   H+   A+P YL+    P +  +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGMKSSSLIARPIAMAHLLLCASPDYLRRRGTPKTAADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +  +        + + T            L VN   +     + G+GIALL  
Sbjct: 187 ARHNYLQYAGVSA-----LDVMQTTGEAARVRLSGNLIVNHLEAQRVMVLHGAGIALLGT 241

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++  +     LV ++ D + P    ++  Y      + K+++F +F+  +
Sbjct: 242 EVIGADLAEGRLVPLLVDEVPPRELPIHVVYASRRHLSAKVRSFVDFLADR 292


>gi|160877344|ref|YP_001556660.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160862866|gb|ABX51400.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
          Length = 333

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 136/280 (48%), Gaps = 9/280 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTLTE GS  +
Sbjct: 5   MIVFAAIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTLTEAGSLFY 64

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V   +E T+ +L      PSG+L+IA  I  G  LL       L  +P I + L+
Sbjct: 65  ENCRKVIAIVENTEQKLNNLKGIPSGELKIAAPIGFGGGLLSEPFNYLLAAHPQISLNLL 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  IDI  +  D AI +  P+  S+LI R L    M   A+P YL   +      EL 
Sbjct: 125 LQDGPIDIVNEGIDLAICIG-PLSDSNLIARHLADWRMLLCASPDYLPMHKIFKHPAELA 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             N I       + +          +   E     + VN+  +++Q  + G G A LP+ 
Sbjct: 184 AFNRINHPCANSETLTHAR-----SQECFELTSQRITVNNMQALIQLTLDGLGFAALPEP 238

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            V    ++  LV ++ +    +++VY       K   K+K
Sbjct: 239 EVHKYLESGQLVTLLPEWSLNTYSVYSVTSARDKQPAKVK 278


>gi|134295543|ref|YP_001119278.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134138700|gb|ABO54443.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 301

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 136/299 (45%), Gaps = 9/299 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE+ +G++L +R  R  TLT+ G
Sbjct: 5   DLPALETFARIVSAGSLSAAARELDLSLSVVSKRLAHLESRLGVRLLHRTTRQQTLTDDG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  + +     +G LR+    +LG+  +   +  F   +P + 
Sbjct: 65  AQFHAQVLRILAEIERAETLMSDRRGTVNGMLRVTAPGELGRVRIVPLVAAFQRQHPALT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    AAP Y+     P   
Sbjct: 125 VQLMLTDTIVDLLAQDIDVAVRIGS-LADSTMIARELAPNHRVLCAAPSYVATHGLPAHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  GD                  +     + L  N   +   + + G+GIAL
Sbjct: 184 ADLRAHRCIVLGDQPRTEWR----FDGAHGSVAVDVTAALLTNDGGAARSFALEGAGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD-WK 298
              + V    D   LVR++     P+  ++  YP       +++AF  F+  + RD W+
Sbjct: 240 KSIWDVDADLDAGTLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVEFLREQLRDAWQ 298


>gi|226953297|ref|ZP_03823761.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226835923|gb|EEH68306.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 300

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 142/300 (47%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE+L  + S +SR +S LE+++ + L  R  R L LT
Sbjct: 1   MKSSIEELLAFITIVDTGSFVAAAERLGQTASGLSRSLSRLESKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ + L   +  L  S    SG +R+ + +    +++   ++ F   YP
Sbjct: 61  QEGQQFLNHARKILNDLNAAEEALLRSDQDTSGIIRVDSAVPFILHVIAPLMQLFHQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+I+L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P
Sbjct: 121 NIEIELNSNDQVIDLLEHKTDVAFRFGE-LHDSSLHAKLVCQSRLYIVASPAYLAQRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              Q+L  H++I F     + +    W   +D      + S ++ +S  ++ Q C+ G G
Sbjct: 180 RHPQQLAMHDVIGFT----RPLYINKWPIKIDGEYFVAQ-SSIKASSGETVRQLCLRGLG 234

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ +    +   LV + ED I  S+  ++  Y +      +++ F  F+  +   
Sbjct: 235 IARLSEFEIWKDLEEGRLVALFEDQIEHSYQRIHAVYYQQEHLPKRVRLFIEFLTEQLEQ 294


>gi|330817742|ref|YP_004361447.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327370135|gb|AEA61491.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 334

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 136/306 (44%), Gaps = 10/306 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q ++   L EFL 
Sbjct: 61  ALTEAGQLFYQHCQAMLAEAQAAMNAVQQLRASPRGTVRVSVPVTLSQTMMSRLLPEFLR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++Q+ + N+ ID+  D  D A+R+R +P ++++++ R L         +P  L  
Sbjct: 121 RYPEVRVQVRVTNQVIDLFEDSIDIALRVRSEPPENANIVVRPLWRTEQMLVGSPSLLGQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L +    T           FN +A             L     ++I +  +
Sbjct: 181 NAPPLVPDDLVRFE--TLDTPSGDGRHVFNLIAPDGTRHVHEHEPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         +++F +F+  K
Sbjct: 239 DGVGIAALPEMMYGGALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRSFVDFLVEK 298

Query: 294 A-RDWK 298
             RD++
Sbjct: 299 LDRDYR 304


>gi|307729453|ref|YP_003906677.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583988|gb|ADN57386.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 300

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 132/297 (44%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L +F +VAR  +   AA +L ++  ++S++++ LE  +G++L  R  R L+LT 
Sbjct: 1   MDGFLDLNLFALVARHRNLAAAARELGVTPPAVSKRLAQLERRLGVRLINRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G       S +  +L   +  + +S  +P+G LR+  +   G+  +   + EF+  YP 
Sbjct: 61  EGELYLSNGSRILDELSELEHLVTQSRGEPTGLLRVNASFGFGRARIAPAVSEFVARYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L L ++ I +  +  D  IR  + +  + +  R L+       A+P Y+     P 
Sbjct: 121 MKILLHLTDRPISLQDEGFDLGIRFGE-VPDARINARLLLENRRVVCASPGYVARHGNPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I   +            +   R         L  N    ++Q+ + G GI
Sbjct: 180 VPHDLTRHACIVLRENESAYGTWH--FSRGKRTETVKVDGALASNDGSVVLQWALEGRGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +   + ++ +     LV ++ D   P   ++  Y E  + + KL+ F +F+    R
Sbjct: 238 VVRSQWEIEGHLARGELVTLLPDWALPDANIHAIYLERNQLSVKLRTFVDFLGEHLR 294


>gi|254295211|ref|YP_003061234.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254043742|gb|ACT60537.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 294

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +  F  VA+ G+F  AAE L  S S +SR + GLE  +   LF+R  R +TLT+ G 
Sbjct: 4   WLGIEEFVAVAKRGNFKLAAEYLGQSTSHVSRAVMGLEDRIHAPLFFRSTRQVTLTDTGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L     ++    +     +  S  +P G+LR+  ++ +G+  +   L  +   +P++ +
Sbjct: 64  ALFEQCRQLVDDRDEALAMVTGS-GEPQGELRVTCSMSMGERFIAPILLRYAEQFPNVSV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ ID++ +  D AIR    +  S L+  ++ +  +   AAP YL+      SI 
Sbjct: 123 SIHLTNRIIDLTSEGFDLAIRTGY-LDDSKLVVTRIASRRLILCAAPEYLEKHGRIDSIA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L+ HN +             +W   VD   +        + NS +++    + G G+  
Sbjct: 182 DLENHNCL--------AGTSTHWRFKVDGSEVSWLPKGRWRCNSGVAVRDAALSGMGLCQ 233

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP++ V D   +  LV ++E        ++   PE      K+    + +
Sbjct: 234 LPEFYVADYLKSGKLVHVLETESRVFEPIWAVCPERRHLLPKVTRLLDLL 283


>gi|254524116|ref|ZP_05136171.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721707|gb|EED40232.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 324

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 133/292 (45%), Gaps = 5/292 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SFT AAE++ +S+ ++S+ +  LE ++G++L +R  R ++LTE+G +L
Sbjct: 14  QLAWFAHIAHHRSFTKAAEEMGVSRPALSQSLKTLEKQLGVRLLHRTTREMSLTEEGQRL 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     +++   +L+ S   PSG LRI T     + L++ +L EF  LYP+++++L
Sbjct: 74  FDAVQPSLSTIDSAVRDLRASHDAPSGLLRINTARLTAKTLIEPHLPEFFALYPELRVEL 133

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D+    I  +  D  IRL + +    +       + M   A+P YL     P +  EL
Sbjct: 134 VMDDGLSSIVAEGCDAGIRLGERLAKGMIAVPVTPMLEMVVVASPAYLARHGTPSTPAEL 193

Query: 187 DKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             H  + +       +   +F+                   N   ++++  + G G+   
Sbjct: 194 AGHECLGYRQTGSGTVYAWEFSTPGQPGHDFEVEPRGRYVTNDDEAMIRAALQGLGVMQH 253

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            D  ++    +  L+R+M +   P    Y   P   +   +++A   F+  K
Sbjct: 254 IDLSLQPMLADGRLLRLMPEWSAPFPGFYLYVPSREQMPPRVRALMEFLIEK 305


>gi|222109397|ref|YP_002551661.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221728841|gb|ACM31661.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 305

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 134/290 (46%), Gaps = 6/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++ +F  VA   SFT AAE L + ++S S  +  LET++G +L +R  R + LT+ G 
Sbjct: 4   FDRMHIFARVAELASFTQAAEALGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    ++   ++  Q   Q        G++RI  +  + +N++   L E L  +P ++
Sbjct: 64  AYYERCKDLLADVDELQSMFQHPDGAGLKGRVRIDMSTGMARNVVVPRLPELLARHPGLK 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L    + +D+  +  DC +R    +  SSL+ R L  + +   A+P YL+    P S+
Sbjct: 124 VELSSTERRVDVVREGFDCVLRTGAVV-DSSLVARPLGLVRLVNCASPAYLRAHGTPRSL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H L+ F + +      F  +      +  P    L VN+  + M  C+ G G+  
Sbjct: 183 ADLPGHRLVHFVNTLGARSAGFEAVVD-GALVLTPMQGALTVNNAEAYMAGCLAGLGLIQ 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P   V D     +LV ++  +  P   +   Y        +++   +++
Sbjct: 242 VPHLGVVDLLARGDLVEVLPQLAAPPMPLTLMYANRRNLPRRVRTVMDWL 291


>gi|229507959|ref|ZP_04397464.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229511805|ref|ZP_04401284.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229518942|ref|ZP_04408385.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229523966|ref|ZP_04413371.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229529028|ref|ZP_04418418.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229607504|ref|YP_002878152.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|255745299|ref|ZP_05419248.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262156023|ref|ZP_06029143.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1]
 gi|262167903|ref|ZP_06035603.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
 gi|262192172|ref|ZP_06050332.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93]
 gi|229332802|gb|EEN98288.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229337547|gb|EEO02564.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229343631|gb|EEO08606.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229351770|gb|EEO16711.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229355464|gb|EEO20385.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229370159|gb|ACQ60582.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|255737129|gb|EET92525.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262023630|gb|EEY42331.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
 gi|262030201|gb|EEY48845.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1]
 gi|262031961|gb|EEY50539.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93]
 gi|327484487|gb|AEA78894.1| Transcriptional regulator [Vibrio cholerae LMA3894-4]
          Length = 296

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  + ++L  R  R ++LT
Sbjct: 1   MLNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTLNVRLLNRTTRKISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP
Sbjct: 61  TEGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N    
Sbjct: 121 KVNFDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +IQ+L++H+ + +   +    +                 S    NS L +M     G G
Sbjct: 180 NTIQDLEQHDWV-YLTRLNLPNQTLTLTNQEGVQHQVKFHSKHSSNSPLGVMTMVQNGLG 238

Query: 241 IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +  +++    + +LVR+  D    S T+   YP       +++ F +++ 
Sbjct: 239 VGSIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYLV 291


>gi|15641949|ref|NP_231581.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121727819|ref|ZP_01680886.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147675040|ref|YP_001217477.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153818743|ref|ZP_01971410.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153822513|ref|ZP_01975180.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227082077|ref|YP_002810628.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|254226491|ref|ZP_04920076.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|254286879|ref|ZP_04961831.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|254849033|ref|ZP_05238383.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297579459|ref|ZP_06941387.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298498018|ref|ZP_07007825.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9656485|gb|AAF95095.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121629855|gb|EAX62269.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|125620997|gb|EAZ49346.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|126510706|gb|EAZ73300.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126519987|gb|EAZ77210.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146316923|gb|ABQ21462.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|150423029|gb|EDN14978.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|227009965|gb|ACP06177.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227013845|gb|ACP10055.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|254844738|gb|EET23152.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297537053|gb|EFH75886.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297542351|gb|EFH78401.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 309

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  + ++L  R  R ++LT
Sbjct: 14  MLNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTLNVRLLNRTTRKISLT 73

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP
Sbjct: 74  TEGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYP 133

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N    
Sbjct: 134 KVNFDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPI 192

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +IQ+L++H+ + +   +    +                 S    NS L +M     G G
Sbjct: 193 NTIQDLEQHDWV-YLTRLNLPNQTLTLTNQEGVQHQVKFHSKHSSNSPLGVMTMVQNGLG 251

Query: 241 IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +  +++    + +LVR+  D    S T+   YP       +++ F +++ 
Sbjct: 252 VGSIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYLV 304


>gi|115360132|ref|YP_777270.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285420|gb|ABI90936.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 300

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 137/297 (46%), Gaps = 12/297 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++++  +   G+FT AA+ L L + ++++ +  LE E+GI+L  R  R +++T 
Sbjct: 1   MDRLQTMQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGIRLLNRSTRRVSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +    ++   ++       +  V P G+LR+   + L + ++   L EF   YP 
Sbjct: 61  EGEAFYARCVQLLGSIDDAFASFPKQRVAPKGRLRLDIAVALAKTVVIPALPEFQQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++  D+  +  DC +R+   ++ SS+I R +  + M   A+P Y+     P 
Sbjct: 121 IELVLGASDQPADLIGEGIDCVVRVG-TLKDSSMIARTVGAVPMVTCASPAYVVRHGLPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL  H  + F     + + ++ + A  +R +     S L  N+  +++   + G GI
Sbjct: 180 TLDELRTHRAVNFFTGANRKILEWTFRANDER-VNVKLPSSLLTNNSEALLSCGLAGLGI 238

Query: 242 ------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 AL P     D+  L+ ++  V      V   YP       K++ F +++  
Sbjct: 239 VHALRPALQPSI---DSGQLIELLPGVPAEPKPVSVMYPNRAHLPDKVRVFIDWLTE 292


>gi|296160780|ref|ZP_06843594.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295889083|gb|EFG68887.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 324

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTGAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   + T + E   +  +PSG LR+ +   +GQ+ +   +  +  LYP+
Sbjct: 61  AGERYLKRCQQILADVSTAEEEASCAHERPSGALRMHSFASIGQHYVLPAISRYRALYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+    AD A+     + +S L+   L T      A+P Y++    P 
Sbjct: 121 VTVELTLSQRMPDLFEGSADVAVIGASTLPNSDLVSLPLGTTFSILCASPAYVRAHGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L  H  +    L        +W L   +          + VN   S++     G G
Sbjct: 181 KPADLAHHECLI---LHTPAFPPHDWVLEGPNGCETMEVNGPVHVNIAESLIVAIREGMG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +LP Y       +  LVR++         +Y  YP       K + +  F+
Sbjct: 238 IGMLPLYAAISGLRDGTLVRVLPQYTAQKMNIYALYPSRKFIDAKTRTWVEFL 290


>gi|221196291|ref|ZP_03569338.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221202964|ref|ZP_03575983.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176898|gb|EEE09326.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221182845|gb|EEE15245.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 323

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 128/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 EVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASRDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  +          E     A  +  + E + +  QVN   ++      G G
Sbjct: 180 QTPDDLPNHVCLRLDTPASPASEWRLERADGEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|254521485|ref|ZP_05133540.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219719076|gb|EED37601.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 302

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 131/291 (45%), Gaps = 5/291 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR    +  +GSFT AAE+L  + S++SRQ+  LE  + ++L  R++R L+LTE G 
Sbjct: 4   FAALRALRAIVDAGSFTAAAERLGTTHSAMSRQLRQLEEHLQVRLLDRNSRRLSLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  + +  +L+    + +    +PSG +RI+    +    L   L  FL  YP + +
Sbjct: 64  GYYREAASLLDRLQEADEQARAGQAQPSGTVRISVPQVVASQELPHWLPSFLQRYPQVAL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  D++ +D+     D A+R+   +  S L+ R+L +      AAP YL     P    
Sbjct: 124 DLSADDQLVDVVGGRFDLALRIAPSLPDSQLVARELASCPRILVAAPAYLARHGLPRQAA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H L+ F       M  +                 L+V++  ++    + G GI+L 
Sbjct: 184 DLEQHALLGFSPTA--SMPPWQLHGPRGATASIEAGQRLRVDATPALYAAALAGMGISLF 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               V+++     L+R++          +  YP A     K++A    +  
Sbjct: 242 TALTVQEDLRAGRLIRVLPAWHAGQRRYFALYPHARALAPKVRALVEHLAA 292


>gi|161520831|ref|YP_001584258.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352987|ref|YP_001948614.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221210121|ref|ZP_03583102.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160344881|gb|ABX17966.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337009|dbj|BAG46078.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221170809|gb|EEE03275.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 315

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 125/296 (42%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YP+
Sbjct: 61  AGENYLRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPALTRYHAQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A+P Y++    P 
Sbjct: 121 VSIELSLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVRRHGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             QEL  H  +T         E    L   D          +Q N+  S+      G GI
Sbjct: 181 RPQELAAHACLTLRTPAFPTHEWV--LEGPDGVEQIHVSGPVQTNTAESLALAIRDGIGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP Y   D   +  LVR++ + I     VY  YP       K++ +   +  + 
Sbjct: 239 GMLPLYAAIDALSDGTLVRVLPEHILQKMNVYALYPSRRYIDAKVRTWVELLRAQV 294


>gi|78062155|ref|YP_372063.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970040|gb|ABB11419.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 322

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  SGSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVESGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  EL  H  +          E     +  +  + E + +  QVN   ++      G G
Sbjct: 180 QSPDELPNHVCLRLDTPASPAGEWRLERSDGEEAVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|238792503|ref|ZP_04636136.1| transcriptional regulator [Yersinia intermedia ATCC 29909]
 gi|238728138|gb|EEQ19659.1| transcriptional regulator [Yersinia intermedia ATCC 29909]
          Length = 317

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V  +GSF+  A QL +S S+ISR +S LE  +  +L +R  R L L+E G 
Sbjct: 10  LSEMAVFVKVVETGSFSVVARQLGVSPSAISRSVSRLEKALATRLLHRTTRKLRLSESGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++ +    + +   +      + + +P G +RI+    +G+ ++  ++ EFL  +  I +
Sbjct: 70  EVFKRCHMMLNAANSVMEVSGQYNQEPEGLIRISVPKAVGRFVVHPHIPEFLRRHSKIDV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QLILD++ +D+  +  D +IR+        +I R+L+TI     A P YL     PL   
Sbjct: 130 QLILDDRYVDLIEENVDLSIRITDQ-PPPGMIGRQLMTIEHLLCATPEYLSIHGVPLHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ I  G+        F       +            N     +   +   GI  L
Sbjct: 189 DLAHHSCIYLGETPGDARWKFR---QGSKAATVAVRGRYAANHTGVRLDAVLQHIGIGSL 245

Query: 245 PDYIVK---DNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIF 291
           P +  +       +V+++         S  ++  YP       KL+ F ++I 
Sbjct: 246 PYFTARTALQQGLIVQVLPGWRFTSSYSGGLWLLYPPTRYLPPKLRVFIDYIV 298


>gi|213052821|ref|ZP_03345699.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 299

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+ AAE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 6   AMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 66  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPGLANSLIMPRLLTFLHQYPGIALEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 126 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ GSGI   P 
Sbjct: 185 ASHAMVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGSGIIQTPR 243

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         V   YP     + ++  F  ++    ++
Sbjct: 244 IAVREALRAGALIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKE 296


>gi|254467629|ref|ZP_05081038.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206684377|gb|EDZ44861.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 305

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  + LRVF  V   GS T     L L+ +  S++I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LESLRVFTRVVELGSITSGGRDLRLTPAVASKRIKELEKHLGVRLFNRTTRSLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    +V   +E  +  + + S  P G +R+   + +G+ ++   +  F+  YP
Sbjct: 60  EAGQLFYTEAKKVLESIEDAEAVVSQFSAVPRGVIRVTAPLGVGRRIIAPLVPGFVEAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
             +I++ + ++ +DI  D  D A  +  P   S+L  RK+        AAP YL+    P
Sbjct: 120 ATEIRMRMSDRKVDILADGLDVAFFIGTP-HDSTLKMRKIADCARVLCAAPQYLERHGTP 178

Query: 181 LSIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              ++ L  HN +      P+  E +  LAT + P           +    +  + + G 
Sbjct: 179 QVPEDLLSGHNCLLL--RYPRSPEYYWTLATPEGPRKLDVSGKYDADDSDVLTGWALDGR 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           GI   P + V  +     LV ++ D           YP       K++ F ++
Sbjct: 237 GIVNKPRFDVAAHLRSGALVEVLPDTPPEPTVFGCLYPHRKLQDPKIRLFVDY 289


>gi|86157173|ref|YP_463958.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773684|gb|ABC80521.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 306

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 7/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                +++F     +GSF  AA +L ++ S++SR+++ LE  +G  L  R  R L+LT+ 
Sbjct: 2   LSLAAIQLFAATVEAGSFAAAARRLRVTPSAVSRRVAQLERALGAPLLARTTRALSLTDD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   H     +  +L   Q  +  S+ +PSG LR+   + LG+ LL   L   L  +PD+
Sbjct: 62  GRAFHDRCLRILEELREAQDAIARSAGRPSGLLRVDAPVGLGRALLAPTLPRLLDRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L L N  ID   +  D  +R+ + +  S+LI R+L    +   AAP YL+    P +
Sbjct: 122 RIALTLRNAFIDPVAEGIDVTVRMGR-LSDSTLIARRLGERRILVCAAPAYLRRHGSPRT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +H  + +   +     D       +             +   ++ +  V G GI 
Sbjct: 181 PHELARHACLGY---LRDGRPDPYRFVAGEGTHDVEVDGPFHSDDAEALREAAVAGKGIV 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            L D++V D   +  LV+++ED     F V+  Y        K++   + +  
Sbjct: 238 ALFDFVVADALASGKLVQVLEDHPLAPFPVHALYAPNRHLLPKVRVLLDHLSE 290


>gi|319764746|ref|YP_004128683.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330826962|ref|YP_004390265.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317119307|gb|ADV01796.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329312334|gb|AEB86749.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 310

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 125/295 (42%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D       F  VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLLVRTTRRITLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +   +   +  +    VK +G LR+      G+  +   +  F  L+PD
Sbjct: 61  EGSAFLDDCQRLLADVANAEASVSAGGVKATGHLRVTAPAGFGRRHVAPLVPRFRDLHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P+
Sbjct: 121 VTISLNLSDRVVDMAGEGYDCAVRVGD-LPDSSLVSVRMADNRRLCVATPQYLQRRGTPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLG 238
              EL +H+ +T      +       +                 L  +    +  +C+ G
Sbjct: 180 HPAELAQHDCLTLSSDASQTRGWAFRVPVAGGGTEVVHFKPGGPLDCSDGQVLHDWCLGG 239

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA    + V+    +  LV ++E+   P   +Y  +P+      +++ +  ++
Sbjct: 240 WGIAWRSTWEVESEIASGRLVAVLEEFAAPPNGIYVVFPQRKHLPLRVRLWIEYL 294


>gi|239816813|ref|YP_002945723.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239803390|gb|ACS20457.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 348

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 144/292 (49%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++ F  VA   SF+ AA  L +S++++SR ++ LET  G++L  R  R L+LT+
Sbjct: 1   MDGLDLIKTFREVAFRRSFSRAAISLGMSKATVSRYVAELETRSGVRLLNRSTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L   ++E+    E T  +LQ     P G+LR++    L    L   + EF+ LYPD
Sbjct: 61  AGQVLLDRSTELVAMAENTLNDLQAHGSHPQGRLRMSAPHGLIAGWLSDVIAEFIQLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+  N D+D+  +  D  +     I   +LI R+LV   M   A+P Y      P 
Sbjct: 121 VYVSLVFTNDDLDLIEEGIDIHL-TGGRIDDMNLIVRRLVPFDMVVCASPAYWARRGIPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H+++++       +       T  + +  P  S ++ N  +++++  + G+G+
Sbjct: 180 VPEDLGRHDVLSYSAKPTTHLP----FETGGKAVEVPVHSRMEANDAVALIELALRGAGV 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +P+ + +   +   LV ++ + +     +Y  Y +   N+  ++   +F+
Sbjct: 236 AYVPEPLAQSHLERGALVPVLREHMPSDHWLYAAYSQRRHNSAAMRTMLDFL 287


>gi|134292115|ref|YP_001115851.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135272|gb|ABO56386.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 305

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 140/301 (46%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S +++SR ++ LE  +G +LF R +R L LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARSMGVSVATVSRGVARLEGRLGGRLFNRTSRQLALTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L     ++Y   E  +   +E +V+P G +R+A  +  G   +   L  F   YP++ 
Sbjct: 66  RTLCEKAGDMYRHAEEAESAAREMAVQPRGLVRLAVPMSFGLRWVAPLLPAFFRAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D A+R+   +  SSL+ R+L  +  +  A+P YL     P   
Sbjct: 126 IDLHLSDASVDLIADGFDAALRIAA-LPDSSLVARRLCAVTQYVVASPAYLAREGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L     +++       +  F   A  + PI       L+V +  +++   + G  I  
Sbjct: 185 RDLAGRACLSYAYRAHSDVWRFTNDAGEEEPIL--PNGPLRVTNSDALLPTLLEGLAIGE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD--WK 298
           LP++I  +   +  L  I+ D       +YF  P A     K+ A  +F      +  W+
Sbjct: 243 LPEFIAGEYLADGRLEAILTDWSLTKGGLYFITPSARARPAKIAALSDFFAEHLSEPSWR 302

Query: 299 F 299
           +
Sbjct: 303 W 303


>gi|120553994|ref|YP_958345.1| LysR family transcriptional regulator [Marinobacter aquaeolei VT8]
 gi|120323843|gb|ABM18158.1| transcriptional regulator, LysR family [Marinobacter aquaeolei VT8]
          Length = 298

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 139/294 (47%), Gaps = 11/294 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D    + +F  VA  GSFT AA+ L ++ +++S+ I+ LE ++  +L  R  R ++L
Sbjct: 1   MATDKLVAMNIFRRVAELGSFTRAADDLDITAATVSKHIAFLERDLDTRLINRTTRRMSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G    + T  +  +LE  ++E +    +P G +R+   +  G   + G +  FL  Y
Sbjct: 61  TDAGLAFLKRTQALLDELEDAELEARGFQAEPRGLIRLNVPMSFGLTHITGAIDSFLARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I+I L L ++ +D+     D AIR+R  +  SSL+ + L        AAP YL++   
Sbjct: 121 PEIEIDLQLSDRMVDLVEQGVDMAIRIRSTLADSSLLAKPLRQSRNIVCAAPGYLEHSPA 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +  +L   N + F       +                     + +S L+I Q  + G+
Sbjct: 181 IHTPADLAAQNCLMFNLHDRPRVWAL-------GDKEVVVSGNYRTDSSLAIRQSLLNGA 233

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+ L+P ++V+ +     LV ++ +    ++TV+  +P   K   K++     I
Sbjct: 234 GVGLVPRFLVQQDLANGALVALLSEYPPQTYTVFALFPPGRKQPTKVRLLLEHI 287


>gi|331017322|gb|EGH97378.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 297

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 126/288 (43%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +  TE G 
Sbjct: 6   LNDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +L+  L  FL  YPDIQI
Sbjct: 66  QLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    AP Y ++   PL  Q
Sbjct: 126 EVCIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFEHHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I            + W    D R +          NS + ++   + G G+A 
Sbjct: 186 DLTQHTCINIRHSPNGSC--YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  + +   ++  L  ++ D        +  YP   + +    AF  
Sbjct: 244 VPISLARPHLESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAFVE 291


>gi|317492343|ref|ZP_07950772.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919682|gb|EFV41012.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 298

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 136/302 (45%), Gaps = 10/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GS + AAE+L+LS++ +SR ++ LE  +G +L +R  R  +LT 
Sbjct: 1   MDRLSAMRVFVCVVEQGSLSRAAEKLNLSRAMVSRYLADLEKWIGGRLLHRTTRSQSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    +  +  +  +   P G LRI ++  L Q  L   + ++L   P 
Sbjct: 61  AGEEVLARCKALLLLSDEIEQIVDNNQQIPRGLLRITSSQSLIQAFLTDAVCDYLTSNPP 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            QI +    K +++  +  D AIR+   +  S+LI R+L T +    A+P+Y +    P 
Sbjct: 121 AQIDICRQEKTLNLVDERIDLAIRITNQL-DSNLIARRLGTCYSVMCASPNYAERHPLPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I++L KHN +T                     +  P    L  N    +    + G GI
Sbjct: 180 KIEQLSKHNCLTHEHYSHHQW----GFTYHGNSVVVPVSGNLSANCATVLTSATLRGFGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
           +LLP Y+V    ++  L+ ++ D    +  +Y  Y         L+ F +F+  + A D 
Sbjct: 236 SLLPRYLVNQLLEDGQLLEVLPDYQPETLGIYGVYTSRQFMPTTLRVFLDFLVSRFASDP 295

Query: 298 KF 299
           +F
Sbjct: 296 RF 297


>gi|260427846|ref|ZP_05781825.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260422338|gb|EEX15589.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 297

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 135/294 (45%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F+ +  +GSF  AA  L ++ S+IS++I+ +E  +G  LF R  R +TLTE G   
Sbjct: 6   DLAIFHAILDAGSFAGAARHLGVTPSAISKRIAQMEGRLGAPLFVRTTRRMTLTEAGQTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              T ++  +L   + E+ E      G +RI ++I LG+  +   + +F   YPD+ + L
Sbjct: 66  AARTKDLLTQLSAAEDEIAEGIGAIRGPIRITSSIALGRRHVLPIVLDFSEAYPDVAVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  D  D A+R    +  S LI R+L        AAP YL     P    +L
Sbjct: 126 TLTDALVDLIEDGYDLAVR-SAALPDSGLISRRLAGNRRIICAAPGYLARHGAPTLPDDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +T     P     +      DRP+   R      NS  ++   C+ G GIA LP 
Sbjct: 185 AGHACLTLNMRGP--FNAWRLGDDWDRPLELGR--GFSCNSLDALHAACLRGLGIARLPS 240

Query: 247 YIVKDN---PNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++V ++     LV + +DV  P+   T+   +P       +++   + +    R
Sbjct: 241 FLVAEHIANGRLVALFDDVEGPAERSTISLLHPYTTVVPRRVRLLADALVEGFR 294


>gi|182678802|ref|YP_001832948.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634685|gb|ACB95459.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 294

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 58/287 (20%), Positives = 131/287 (45%), Gaps = 7/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V  +GSF+ AA   ++ Q ++S+ I+ LE  +G++L  R  RGL  TE G   
Sbjct: 6   AIETFVRVVDTGSFSAAARIQNIGQPTVSKAIAQLEDWLGVRLLLRSTRGLAPTEAGMSF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +        + +   +  + ++   SG++R++  +   +  +   L  FL  +P++++ L
Sbjct: 66  YERARRAIEEADEAVLAARGTAAGLSGRVRVSAAVCFARLHIVPKLPAFLATHPNVEVDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L++++ID+  +  D A+R+  P+    +  RK+        A P Y +   +P +  +L
Sbjct: 126 LLEDRNIDLVAEGVDVALRMG-PLTDPGMTVRKIAERRRLVMATPEYFERYGKPETPSDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + +        EDF +    ++         +++++   +    + G G+ +  +
Sbjct: 185 IGHQAVIYTR--DNGGEDFTFTRNTEQ-TSIGLSGRVRISATEGLRAAVLAGIGLTIASE 241

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +          +V  ++D   P+ ++   YP     + K +AF +F+
Sbjct: 242 FAFSPELKTGEVVTALDDWTLPAISLSAVYPTGRMASTKARAFVSFV 288


>gi|94312377|ref|YP_585587.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356229|gb|ABF10318.1| transcriptional regulator, LysR-family [Cupriavidus metallidurans
           CH34]
          Length = 331

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 124/293 (42%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   GS   AA   +++   I R+I+ LE  +G+KL +R  R + +TE
Sbjct: 29  MDKLKQIEAFIAVVEHGSMAAAALTQNVTPVMIGRRINALEARIGVKLLHRSTRRIVVTE 88

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG+       +    L+  ++ + E   K +G L ++     G+  +  +   FL   P+
Sbjct: 89  QGAAFMEQCKKALADLDRAEMLIAEGKHKATGHLIVSAPAAFGRKHVAPHAPAFLAANPE 148

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI   L ++ +D+  +  D  IR+   I   + +  KL T        P Y      P 
Sbjct: 149 VQISFNLTDRVVDLVREGYDVGIRIGGAI-DPNFVAIKLATNKRVVCGTPAYFARHGVPH 207

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           ++++L+KHN + F     +  +   W    +      R++  L  N    + ++     G
Sbjct: 208 TLEDLEKHNCLAFNL---QGGQQRGWYFQQNGKTVTVRVNGNLDCNDGELLHRWTGESLG 264

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + +    ++  L+ ++++   P + +   YP+      K++ F   +
Sbjct: 265 LGWRSTWEILPQLESGELITVLDEYALPDYDILAVYPQQRPVPAKIRFFIEHL 317


>gi|254227398|ref|ZP_04920830.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262396337|ref|YP_003288190.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151940010|gb|EDN58836.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262339931|gb|ACY53725.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 318

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 122/297 (41%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R + LTE
Sbjct: 1   MDKIRSLRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V  +L   +  L+  +   SG L+I   +  G+  ++  LKEF   YP 
Sbjct: 61  AGRRYANTARFVLDELAACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I +  D+  +DI     D +IR    +Q S LI R+L  I     A+  YL     P 
Sbjct: 121 ITIDIHYDDAYVDIIEQGIDVSIR-SGVVQDSQLIVRQLSPIDFIICASQDYLARHGVPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                + H+ + F       +               P  +   VN   S+ + C  G G+
Sbjct: 180 GPDVFNDHSWVRFRFKQTGKLLPIRMPEPDGASEYNPERN-FIVNDGESMAELCAEGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P +I +D   +  LV I   +      VY  Y        +++ F +FI    +
Sbjct: 239 TQIPHFIARDWLKSGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFITQAIQ 295


>gi|269965003|ref|ZP_06179168.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
 gi|269830306|gb|EEZ84531.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
          Length = 318

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 125/298 (41%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R   LTE
Sbjct: 1   MDKIRSLRFFIATLDGGSFAAAAKVYGTDPSTVSKAIHRLESDLGIQLFQRSTRQSRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V  +L   +  L+  +   SG+L+I   +  G+  ++  LKEF   YP+
Sbjct: 61  AGRRYANTARFVLEELAACEDSLKSHNDALSGQLKINVPVSYGRLYIRPLLKEFCRRYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I +  D+  +DI     D +IR    +  S LI R+L  I     A+  YL     P 
Sbjct: 121 ITIDIHYDDAYVDIIEQGIDVSIR-SGVVHDSQLIVRQLSPIEFIICASQDYLARHGVPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                + H+ + F       +              +P  + + VN   S+ + C  G G+
Sbjct: 180 GPDVFNDHSWVRFRFKQTGKLLPIRMPEPDGASEYDPERNYI-VNDGESMAELCAEGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +P +I +D   +  LV I   +      VY  Y        +++ F +FI    +D
Sbjct: 239 TQIPHFIARDWLKSGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFITQAIQD 296


>gi|170699264|ref|ZP_02890314.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135818|gb|EDT04096.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 301

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 11/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LR F  VA +G F+ A  +L+L+ SS+ R +  LE  +G  L  R  R +TL++
Sbjct: 1   MDKFSALRAFVEVAEAGGFSSAGRRLNLAASSVVRAVDALEASLGTVLLNRTTRQVTLSD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    ++   L      + +   +PSG LR++  +  G + +  ++  FL  YP 
Sbjct: 61  AGAVYYARAKQLLEALAEADALVADRGDEPSGPLRVSVPVAYGMHRIAPHVGAFLARYPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L +  +D+     D AIRL +   S+ ++ R+L T   +  A+P YL     P 
Sbjct: 121 LDLDLQLTDARVDLVTGRIDVAIRLGEAAPSAEVVARQLGTFRRYVVASPDYLDAHGTPS 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  H  + F     +    F                 L+ N    +    + G GI
Sbjct: 181 TPGELVDHGCLRFHFGGDQQAWSF---VDAHGATKVLVTGRLKSNHSEVLRAAALDGGGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD+++  +     L R+ E            V   Y    + + ++ AF +F+  +A
Sbjct: 238 ALLPDWLIDADVRAGRLRRLFEQYDVVPDAARSIVTALYLPNQRGSKRVTAFIDFVEAQA 297

Query: 295 R 295
           R
Sbjct: 298 R 298


>gi|153215012|ref|ZP_01949771.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124114986|gb|EAY33806.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
          Length = 301

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRGFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P
Sbjct: 125 DVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLAEHRCLT-GSVKRWSYQHKETKQTLD----VPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV +  D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFLDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|121587818|ref|ZP_01677576.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121547919|gb|EAX58002.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
          Length = 309

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  + ++L  R  R ++LT
Sbjct: 14  MLNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTLNVRLLNRTTRKISLT 73

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP
Sbjct: 74  TEGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYP 133

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N    
Sbjct: 134 KVNFDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPI 192

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +IQ+L++H+ + +   +    +                 S    NS L +M     G G
Sbjct: 193 NTIQDLEQHDWV-YLTRLNLPNQTLTLTNQEGVQHQVKFHSKHSSNSPLGVMTMVQNGLG 251

Query: 241 IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +  +++    + +LVR+  D    S T+   YP       +++ F +++ 
Sbjct: 252 VGSIASFLIDKLPDASLVRLFPDFYQVSTTMNILYPSRKNLPPRVRLFIDYLV 304


>gi|34496170|ref|NP_900385.1| transcriptional regulator PtxR [Chromobacterium violaceum ATCC
           12472]
 gi|34102024|gb|AAQ58391.1| transcriptional regulator PtxR [Chromobacterium violaceum ATCC
           12472]
          Length = 312

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 132/289 (45%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L++F  VA +G FT AAE+L ++++++S Q+  LE ++G  LF R  R + LTE G
Sbjct: 18  NLEGLQIFVAVAEAGGFTAAAERLGMTKANVSLQVGRLEAQLGATLFTRTTRRVKLTEAG 77

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+         L    ++    + + SG LR+   +      +     +F+  +P +Q
Sbjct: 78  QALYLDAQPALAALRDALLQAGHGAAELSGTLRLTAPVSHMAESVAPAATQFIRRHPGLQ 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  D AIRL   ++ SSL   KL        A+P YL+    P   
Sbjct: 138 LELHAIDRMVDLVAEGMDLAIRLG-TLRDSSLRALKLGEFAQQLVASPAYLRERGMPAHP 196

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+ +    L       F      +  +     + ++V+S  S+    + G+G+++
Sbjct: 197 GELAGHDWVALTLLKTPLTWRFAGAGGAEETV--RMRARIKVDSAASLRSLLLAGAGMSV 254

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L  + V+++     L+ ++     P   VY  +P         +AF  F
Sbjct: 255 LDSFSVQEDLRQGRLIHLLPQWTLPKGGVYAVFPPGRHAPAAARAFVEF 303


>gi|170703933|ref|ZP_02894604.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|171320182|ref|ZP_02909243.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|170131160|gb|EDS99816.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|171094563|gb|EDT39616.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 315

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 127/303 (41%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD
Sbjct: 61  AGESYLRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHTQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P 
Sbjct: 121 VSIELSLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPEYVKRHGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +T         E    L              +Q N+  S+      G GI
Sbjct: 181 RPQDLGAHACLTLCTPAFPTHEWV--LEGAGGVEQIHVAGPVQTNTAESLALAIRDGIGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----- 293
            +LP Y   D   +  LVR++ + I     VY  YP       K++ +   +  +     
Sbjct: 239 GMLPLYSAIDALRDGTLVRVLPEHILQKMNVYALYPSRRFVDAKVRTWVEMLRAQVPGMI 298

Query: 294 ARD 296
           ARD
Sbjct: 299 ARD 301


>gi|116696209|ref|YP_841785.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530708|emb|CAJ97055.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 308

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 131/292 (44%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F  + + GS T AA++L ++  ++S++++GLE  + ++L +R  R ++LT +G
Sbjct: 3   NLSDVAFFACINKQGSLTGAAQELGVTPPAVSKRLAGLEARLRVRLLHRTTRRISLTPEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  ++E  +  +  +   P G L+I  T+  G+  +   L  F    P+I+
Sbjct: 63  ESYLVEGARILAEMEALERSIAGTGSTPHGLLKIGATLGFGRRHIAPALSGFSRRCPNIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL L ++ +++     D  I   + +    L  R L        AAP YL+   EP S 
Sbjct: 123 VQLYLTDRPLNLVEQGLDAMIHFGE-MPDVRLTARLLANNRRLLCAAPSYLEARGEPSSP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +HN I F     +    ++      +   + R   +  N   S + + + G G+ +
Sbjct: 182 RELARHNCI-FIREADETFGTWHLRHGAQQETIKVR-GTMSTNDGESALAWALDGQGLIV 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             ++ V +   +  L R++         ++  +P       K++A  +F+  
Sbjct: 240 RSEWDVAEPLRSGALRRVLPQWQFAPADIHLVFPARNHRPDKVRALVDFLLE 291


>gi|170696407|ref|ZP_02887535.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138668|gb|EDT06868.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 318

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 137/291 (47%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  +  + SFT AAE L++ +++ +  +  LE  +G +L  R  R +++T +G+  
Sbjct: 7   AMRTFLRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTQLLARTTRRISVTPEGAAY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +++   ++  +  ++ ++   +G+LRI     +   ++   L +F   YP++ + +
Sbjct: 67  YERCAQILADIDEMEASIRHATDNLTGRLRIEMPGSVASAIVLPALDDFHARYPNLDLAI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+ +D+  +  DC+I+L + +  S+L+ R+L T+     A+P YL     P  + +L
Sbjct: 127 GVSNRTVDLVAEGIDCSIQLGE-LPDSNLVARQLGTLEHVTCASPDYLARYGTPTDLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLP 245
             H  +    + P    +  +   VD      +++   +V+   + +   + G G+ + P
Sbjct: 186 RGH--VAVNCMSPNSGREVAFDFEVDGEAQSVKVNGFIKVSDEQAYLTCGLQGHGL-IQP 242

Query: 246 DYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             I      D+  L  ++         V   Y +  + + +++AF +++  
Sbjct: 243 ARIAAQPYLDSGQLREVLPQWKPVPMPVSVAYLKNRRVSPRVRAFVDWLAE 293


>gi|115359776|ref|YP_776914.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285064|gb|ABI90580.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 302

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+  +D L     F  V   GS T  A  L  + S +SR I+ LET +G++L  R  R L
Sbjct: 1   MARRFDHLGDVEAFVTVIEKGSMTAGAVALGSTPSVLSRAITRLETRLGVQLLRRSTRRL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTEQG      +   +  ++  +  +Q      +G +RI+     G   L   L++F  
Sbjct: 61  SLTEQGRLYLEQSRAAFLLIDDAERAIQGHGGTLTGHVRISVPTTYGHYRLPPLLRQFTQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P+++++L + N+++D+  +  D AIRL + +  S L+ RKL    +   A+P Y+   
Sbjct: 121 QHPEVRVELNIANRNVDLVAEGFDLAIRLGE-LPDSGLVARKLEDAALCLVASPEYVARA 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYC 235
             P ++ +L  H  + F  ++P       W+   D    +  P  +    +  L ++   
Sbjct: 180 GVPENVADLAHHLCLPF--MLPSSGRIAPWVFRDDGQDIDWLPPSNVAVSDDVLGVVSMA 237

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G+GI    D+IV+D     +LV ++  +   +      Y    + +   +A  + I  
Sbjct: 238 QSGAGICQTYDFIVQDRVRAGSLVEVLPHLRGRTRPFSVIYAPHRRLSAASRALIDLIVA 297


>gi|170741283|ref|YP_001769938.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168195557|gb|ACA17504.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 301

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 133/290 (45%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA++GSF+ AA +L LS +++S+ +S LE  +G  LF+R +R L LTE G
Sbjct: 5   DFEAWAIFARVAQAGSFSRAAAELALSTATVSKAVSRLEARLGASLFHRTSRRLALTETG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  + ++Q  + +P G +R+A  +  G   L   L +FL  +P + 
Sbjct: 65  RAALEGAARIVAAGEAVEADVQTGAREPRGLVRLAAPMSFGLAHLAPRLPDFLADFPQVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     AAP YL     P   
Sbjct: 125 VDLHLSDAQVDLVGGGFDLGLRIAA-LSDSSLRVRRLCGVRRSLVAAPAYLARAGRPGHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  + +  L       F         +       L+ N+  ++    + G G+A+
Sbjct: 184 RDLARHACLGYAYLPNPERWHFT---GPGGEVAVAPAGRLRANNADALTPALLAGFGLAV 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            PD+++ D+     L R++ +   P   +    P       ++ A   F+
Sbjct: 241 QPDFLIFDDLASGRLERVLPEWSPPPIALNLVMPPGALRPARVVALIAFL 290


>gi|295689351|ref|YP_003593044.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295431254|gb|ADG10426.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 300

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L VF  V    SF  AA++L +S++++S+ ++ LET +G +LF R +R L LT+ G
Sbjct: 6   DLEGLAVFAKVVELRSFAAAADELAMSKATVSKAVTRLETRLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    + V  + +  + E    S  P G +R+A  + LG   L   L  FL  YP++ 
Sbjct: 66  QSLVERATRVLAEAQAAEEEASSQSSAPRGLVRMAVPMSLGITTLGPVLPAFLEAYPEVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  ID+     D A+R+   +  SSL+ R+L  +  H  A+P Y      P   
Sbjct: 126 IDLNLSDATIDLVGMGFDLALRVAD-LPDSSLVARRLRPVKRHLVASPAYWDRHGRPHHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +T+G       E + +    +     PR S ++ N+   ++   + GSG+A+
Sbjct: 185 ADLAQHRGLTYGHQ--SAPETWRFQKGSEEAAVRPR-SVIRANNGDVLLPALLAGSGVAM 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPD+IV     +  L  ++ D       ++   P       +++A   +I
Sbjct: 242 LPDFIVGPAVADGLLEEVLTDWQRAPIALHLVMPPGGPRPARVEALAAYI 291


>gi|237730159|ref|ZP_04560640.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908765|gb|EEH94683.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 309

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 130/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVELGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+ +    +L   +  P G LRI  +  + QN+L G     L  YP + +
Sbjct: 64  IYYQGCRRMLHEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTATMLKEYPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLAQFGAPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +        E         R I E R      N  ++++++   G+GIA +
Sbjct: 183 DLSNHSWLEYSVRPDNEFELIAPEGISTRLIPEGR---FVTNDPMTLVRWLAAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++ +     +  ++    +    VY  Y E  K   K++   N++  
Sbjct: 240 PLMWVINEINRGEVEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINYLTE 290


>gi|325914407|ref|ZP_08176754.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539415|gb|EGD11064.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 297

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 128/294 (43%), Gaps = 4/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L     + R GSFT AA +L +SQS++S  I GLE  +G++L  R  R +  TE G
Sbjct: 5   NFKDLLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEASLGLRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     L E    P+G +RI  T    + +L   L + L  YPDI 
Sbjct: 65  ERLIQTVAPRFAEIEEALSALSEMRDTPAGTVRITATDYAAREILWPKLSKLLQQYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++DN   DI  D  D  +RL   ++   +  R    + M   AAP YL     P + 
Sbjct: 125 VEMVVDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMAIVAAPSYLARRPLPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H  I         +  +  L    R +       L  N     M   V G GIA 
Sbjct: 185 QDLTAHRCINLRMKTAGGIYAWE-LEKDGREVIVRVQGQLTFNGAYEAMDAAVDGFGIAF 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + + +V+ +     L  IM+D       ++  YP    ++       + +  KA
Sbjct: 244 VQEDLVRPHLKAGRLRWIMKDWSPTWPGLHAFYPSRRHSSPAFNLVLDALRYKA 297


>gi|283788115|ref|YP_003367980.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282951569|emb|CBG91268.1| LysR-family transcriptional regulator [Citrobacter rodentium
           ICC168]
          Length = 309

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 130/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMTVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G     L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTATMLKEYPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLAQYGIPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++I ++   G+G+A +
Sbjct: 183 DLANHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTISRWLTAGAGVAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +++ +     L  ++    +    VY  Y E  K   K++   N++
Sbjct: 240 PLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINYL 288


>gi|153833886|ref|ZP_01986553.1| AphB/LysR family [Vibrio harveyi HY01]
 gi|156975361|ref|YP_001446268.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|148869828|gb|EDL68802.1| AphB/LysR family [Vibrio harveyi HY01]
 gi|156526955|gb|ABU72041.1| hypothetical protein VIBHAR_03092 [Vibrio harveyi ATCC BAA-1116]
          Length = 291

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +   S +  +L +T  E+ +     SGK++I+   +L + ++      F+  YPDI
Sbjct: 61  GERFYHECSPLLQRLTSTAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNAFMKQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L  ++    +     D   R+  P + SSLI RK+  +     A+P YL     P  
Sbjct: 121 NIELTTESNADQLDPTEWDVIFRVG-PQRDSSLIARKIGEVKDILVASPDYLNANPAPNH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H+L+    LI      +  + +    +        Q N+   +   C  G GI 
Sbjct: 180 AEELSNHSLLKGSPLI-----KWTLINSKGESVVNVERGRFQANALNVVRSSCSEGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD ++K   ++ +LVRI+ D       +Y  Y        K++ F +F+  
Sbjct: 235 LMPDVMIKEYIESGDLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 287


>gi|260753525|ref|YP_003226418.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552888|gb|ACV75834.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 331

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 138/294 (46%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A + SFT A +QL +S S+I + I+ LE  +G++LF+R  R +TLT 
Sbjct: 1   MDSLGSLNAFVHAAEARSFTTAGKQLGVSSSAIGKAIARLEGRLGVRLFHRSTRTITLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G         ++ ++E  ++E+ ++   P GKLRI+    L   L+   +  F+ L+P+
Sbjct: 61  EGGLFLERCRRIFSEVEAAELEISQTRGAPHGKLRISLP--LVGMLMMPTISAFMRLWPN 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++ +D+  +  D  IR  + I  S L+ R L + +     +  Y      P 
Sbjct: 119 IELDLDFTDRLVDVIDEGFDAVIRTGE-INDSRLMTRMLGSFNYQLVGSADYFAEHGVPE 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  +         +ED+  +   +    E     +  ++   ++       GI
Sbjct: 178 TSADLIAHRCLRHRYPSTGKLEDWPLIVRSNDTAVELPTVAV-SSAIEPLVYMAERSLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A LPD+ V++      L+ +ME+ +  S T    +P + + + K++ F +F+  
Sbjct: 237 ACLPDFAVREQVQTGTLISVMENAVCHSGTFRILWPSSRQLSPKIRVFVDFVAE 290


>gi|91783822|ref|YP_559028.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687776|gb|ABE30976.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 294

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS T AAE+  +S + + + I  LET +  +L  R  R  +LTE G + +
Sbjct: 7   MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLETRLVTRLLTRTTRRQSLTEIGRQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L++   +  G  +    + E+L  +PDI ++L 
Sbjct: 67  EQCRRILADVKDAESLAEAMAAAPRGVLKVTAPLTYGVEVFAPAMTEYLTAWPDITLELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ ID+  +  D ++R+ + +  SS + R L    M A A+P YL     P + ++L 
Sbjct: 127 LSNRVIDLVEEGFDASVRIGQ-LPDSSFVARPLKPYRMRACASPAYLARAGTPRTPEDLM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + F     + +         +  +   R    + N+  ++    + G G+ L P+ 
Sbjct: 186 QHECLGFLHWGREGLWRLGGETADENHL---RAGRFRANNGQALKVAALHGFGLVLQPEA 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++     +  LV ++ED +     V+  YP   + T KL +F +F+  +
Sbjct: 243 LLAREIASGELVSVLEDYLPEGAPVHLLYPRDRRATPKLTSFIDFVIER 291


>gi|58040534|ref|YP_192498.1| transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58002948|gb|AAW61842.1| Transcriptional regulator [Gluconobacter oxydans 621H]
          Length = 305

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 142/299 (47%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   + ++++F  V  SGSF+ AA     + S++S+ I  +E  +G++L  R  R L++T
Sbjct: 1   MDNRFGEMKIFLRVVESGSFSEAARLSMTTPSTVSKLIGRVENRLGVRLVERSTRRLSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   +     +  +L+  +  L + +V+ +G +RI  ++  G   L+  L  F   YP
Sbjct: 61  PEGLAYYDRAQALIAELDDMEGFLSKKTVQLTGTVRINASVAFGTLALEPLLPPFWDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + L L ++  D+ +D  D A R+ K +Q SSL  R L ++      AP YL+    P
Sbjct: 121 DIVVDLSLSDEMTDLYLDRTDIAFRVGK-LQDSSLTARHLGSVPRLIVGAPDYLERFGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L+ H  + F       +     L    R +       L  N+  ++ +  + G+G
Sbjct: 180 ETVDDLEHHRCLGFNFRRAAPVWP---LQERGRIVDRIVQGPLLANNGETVRRAAIRGAG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A L +Y V+++     LV ++ +        ++  Y    +   +++ F +F+  + +
Sbjct: 237 LARLAEYHVREDLAAGRLVEVLTESGTRDEEEIHALYQGGKQVPQRIRVFLDFVVPRLQ 295


>gi|325123973|gb|ADY83496.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 300

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 145/300 (48%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT
Sbjct: 1   MKSTIEELVAFIAIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ ++L   + ELQ+S    +G +RI +      +++   + +F   YP
Sbjct: 61  QEGQQFLVKARKILNELNAAEEELQKSDQGTAGLIRIDSATPFVLHVIAPLMHKFRECYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+I+L  +++ ID+     D A R  + +  SSL  + +    +   A+P YL+    P
Sbjct: 121 NIEIELNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLFIVASPEYLEIKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L++H+LI F    P  +  +      +    + +I   + +S  ++ Q  + G G
Sbjct: 180 TQPEQLEQHDLIGFTR--PAYINSWPIKVGDEYFFAQSKI---KASSGETVRQLTIRGHG 234

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ +    +   L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDIEEGRLIALFEDQIEYQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|261250590|ref|ZP_05943165.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
 gi|260939159|gb|EEX95146.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
          Length = 295

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 145/299 (48%), Gaps = 12/299 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +   +R F ++A+ G+FT AAE L++S+S +SRQIS LE+ +G+ L  R  R L LT 
Sbjct: 4   NVNLADIRSFVLIAQLGNFTKAAEALNVSRSHVSRQISALESRMGVSLVTRTTRSLKLTY 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G + ++       ++E   +   + + +  G +RI +    LG++++   + +F+  + 
Sbjct: 64  AGERFYKQCESALMQVEQALLAAVDDTEQVQGHIRINSVGGPLGEDVVANYVGQFMRQHQ 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI +++   +  ID+  D  D A R+ K ++ ++ I R L  I M   A+P YL    EP
Sbjct: 124 DITVEIDFSSPRIDLIEDQFDIAFRMGK-LEDANFIGRHLSDIEMVTLASPDYLAIYGEP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              ++L +H ++         +  +++    D    E  +S  L   +  +++   + G+
Sbjct: 183 EHPKQLLEHRIL------RGSVTRWSYQHQADESRYEVSVSAHLVCKNGRALVAGALQGN 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI  +P        +  +LV IM D    S   Y  Y        +LKAF +F+  + +
Sbjct: 237 GIIRVPAMYCMGEIEQGSLVPIMSDWKVESVPFYAIYHRDKYQPKRLKAFIDFMQQQFK 295


>gi|224825387|ref|ZP_03698492.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602308|gb|EEG08486.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 301

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 130/293 (44%), Gaps = 7/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  + + GS T  A++L ++  ++SR++S LE  +G++L  R  R L LT
Sbjct: 1   MN-DLSDLAFFTRLMQCGSLTATAQELGITPPAVSRRLSALEKRLGVRLLNRTTRTLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G         +   L   + EL  S  +P G LR+  T+  G+  +   +  F+  YP
Sbjct: 60  HEGEHYLSQGQRILDDLAELERELTGSQSEPQGLLRVNATLGFGRRHVAPAVSAFVRTYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
             ++QL L ++   ++    D +IR  +P ++  L+ RK+V       AAP YL      
Sbjct: 120 KTEVQLQLSDRMPALTGGAFDVSIRFGEPPEA-RLVARKIVANRRVLCAAPSYLDALAPV 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + +EL ++  I   +           L    R         L  N   + + +C+ G G
Sbjct: 179 TAPRELSRNACIVVRENQEAYGIW--QLHAGSRQETVKVGGALATNDGETAVNWCLEGHG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I L   + V     +  L +++ +       ++  +P  L  + K++AF +F+
Sbjct: 237 ILLRSLWDVAPYLQSGRLRQVLPEWQGAPADIWALFPPRLNLSAKVRAFVDFL 289


>gi|146340929|ref|YP_001205977.1| OprD regulatory protein [Bradyrhizobium sp. ORS278]
 gi|146193735|emb|CAL77752.1| putative transcriptional regulatory protein, LysR family; putative
           OprD regulatory protein [Bradyrhizobium sp. ORS278]
          Length = 297

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + +  F  VAR GSFT AA +L +SQS++S  +  LE  +G++L  R  R +  T  G
Sbjct: 5   NLNDVLGFLAVAREGSFTRAAARLGISQSALSHSLRNLEARLGVRLLARTTRSVAPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R     + ++ET    L E   KP+G +RI        ++L   L++ L +YPDI+
Sbjct: 65  ERLLRSIGPRFDEIETELAGLSELRDKPAGTIRITAGEHAADSVLWPALRKLLPVYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ D    DI  +  D  +RL + +    +  R    + M    +P Y      P   
Sbjct: 125 VEVVTDYGLTDIVAERFDAGVRLGEQVAKDMIAVRIGPDLRMAVVGSPAYFAVRARPRRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L +HN I     +P     + W         + R+   L  N+    M     G G+A
Sbjct: 185 QDLTEHNCINI--RLPTLGGIYAWEFEKRGRTLKVRVDGQLVFNNITMRMNAVRAGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+  V+D+     LVR++ED   P    +  +P   + T       + +
Sbjct: 243 YLPEDQVRDDLAKGKLVRVLEDWCAPFAGYHLYFPSRRQPTSAFTVLVDAL 293


>gi|161520666|ref|YP_001584093.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353149|ref|YP_001948776.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221209918|ref|ZP_03582899.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160344716|gb|ABX17801.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337171|dbj|BAG46240.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221170606|gb|EEE03072.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 323

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 128/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 EVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASRDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  +          E     A  +  + E + +  QVN   ++      G G
Sbjct: 180 QTPDDLPNHVCLRLDTPASPASEWRLERADGEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|115372418|ref|ZP_01459727.1| transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370631|gb|EAU69557.1| transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 288

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 135/284 (47%), Gaps = 9/284 (3%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V  +G+F  AAE L L+QS +SR ++ LE  VG++LF R AR ++LT++G + +   + 
Sbjct: 3   AVVEAGNFVRAAEALGLTQSGVSRAVARLEQRVGVRLFDRTARAVSLTDEGRRFYEEVAP 62

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
               +E        ++    G LR+      G  +L   L EFL L+P++  +L++ ++ 
Sbjct: 63  HLAGIEDAATAATGAAATVRGHLRVNADAAFGHYVLAPRLGEFLALHPELSFELVVRDRI 122

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK--HN 190
            D+  +  D A+R  +P + SSLI R++    +   A+P Y+     P    EL +  H 
Sbjct: 123 GDLVAEGLDMAVRFGEP-EPSSLICRQIGRSQVLTCASPEYVARRGRPKHPSELARGAHE 181

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            I   +        F+W     R + +  +   L VN   S++   + G G+    ++ V
Sbjct: 182 CILVRNT--WTGRHFDWEFHQGREVVQVDVQGRLMVNDSGSLISAMLSGHGVGQPFEFSV 239

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   D+  LV+++       + V+  +        K++AF +F+
Sbjct: 240 RELIDSGRLVKLLPAWSDERYPVHVYHRSREFPAAKVRAFIDFL 283


>gi|241764187|ref|ZP_04762221.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241366464|gb|EER60968.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 297

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR+ SFT AA QL ++Q ++S  I  LE  +G++L  R  RG++ TE G
Sbjct: 5   NFSDLLAFIAVARARSFTRAAAQLRVTQPALSYTIRALEERLGVRLLMRSTRGVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  + ++E     L E   +P G +RI       +++L   L +FL  YP I+
Sbjct: 65  QRLLDRLAPEFDEIEAEIQSLGELRDEPMGTIRITAIDYAIRSILWPKLAKFLPKYPKIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ + + +DI+    D  +R  + +    +  R    +      +  Y  +   P + 
Sbjct: 125 VELVNEYESVDIAARGYDAGVRFGQELAQDMISVRIGPDVRNMVVGSKSYFADRPVPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L +H  I         +  + W  T  +     R+   +  N+   + +    G G+A
Sbjct: 185 RDLTEHACINLRTSTYGGL--YEWEFTKGKRAVNARVDGTVTFNNAYDVFEAAKAGFGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+ +V+       LV ++ED        +  YP   + +  +      +
Sbjct: 243 YLPEDMVRPYVAKGQLVSVLEDWCPVWPGFHLYYPNRRQPSRAMTLLVEAL 293


>gi|157960385|ref|YP_001500419.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845385|gb|ABV85884.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 304

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 128/292 (43%), Gaps = 9/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F V+A  GSFT AAE+L  S+S +S+Q++ LE  +G+ L  R  R   LTE
Sbjct: 4   DLNLADVRAFTVIAEKGSFTLAAEKLGCSRSHLSKQLTQLERYLGVTLITRTTRAQRLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
           QG   +         +E    +  + +    GK+ I      +G+ ++   + +F+ L+P
Sbjct: 64  QGQFFYERCQHALDVMEQAVAKTVDDAHNLQGKININCVGGYIGEEIVNQLVNDFMSLHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I I L   ++ +D+ +D  D   R+ + ++ S L+ RKL+ I     A+P Y+     P
Sbjct: 124 NIHIHLDFSSQRVDLVLDEFDLVFRMGE-LEDSGLVARKLMDIANCTLASPRYIAKHGRP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + +EL  H  +T          +++  +   +         L   +   +    + G+G
Sbjct: 183 ENPKELKSHACVT----GSVYHWNYHRRSDKTQKTEVTITGALLCKNGRVMKSSALAGNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  LP+           LV + +D       +Y  Y +      +L+ F  F
Sbjct: 239 IVRLPEIYCSAELNKGELVHVFDDWTISDTPLYLLYSKDQFQPARLRQFIEF 290


>gi|115358714|ref|YP_775852.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284002|gb|ABI89518.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 322

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASRDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  +          E        +  + E + +  QVN   ++      G G
Sbjct: 180 TTPDDLPNHVCLRLDTPASPASEWRLERGDDEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ D    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDLREGRLIRVLPDYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|327193182|gb|EGE60090.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 301

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 135/297 (45%), Gaps = 7/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + +F  V  +GSF    + + LS+S+  + +  LE  +G +L  R  R L+LT++G
Sbjct: 5   NLNDILIFMAVVDAGSFVAGGQAMGLSRSAAGKAVIRLEDRLGTRLLNRTTRRLSLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     V   ++  +  +   S  P G LR+      G+ ++   ++++LL +PDIQ
Sbjct: 65  RLFYEHGLGVLASVDEAEASVAGQSGAPRGVLRLTVPDAFGRLVVLPIVEKYLLAWPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS--SLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++   ++  DI  +  D AIR+     +S   L+ R +        A+P YL +  EP 
Sbjct: 125 VEVNFTDRKADIVEEGFDLAIRIGAMPSASENRLVSRVIAADRARLCASPSYLADRGEPC 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L  H+ + F        + + +       +     S L+++S  +I    V G GI
Sbjct: 185 HIDDLAAHDCLVFSS--RDQRQGWRFRGDDGAWVKAQGRSRLRLDSNEAIRDAAVAGLGI 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ALLP ++   +     L  ++ ++      +   YP+      +++ F + +  + R
Sbjct: 243 ALLPGFLAAGDLAAGRLRHVLPELEIDDAKIVALYPDKRLLEPRVRRFIDLMVEELR 299


>gi|320182033|gb|EFW56938.1| Putative LysR-like transcriptional regulator [Shigella boydii ATCC
           9905]
          Length = 302

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAAQVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVASGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + ++  ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELEAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED  T        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|310766950|gb|ADP11900.1| Uncharacterized HTH-type transcriptional regulator yhjC [Erwinia
           sp. Ejp617]
          Length = 301

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 135/292 (46%), Gaps = 14/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V    SFT AA+ L + + ++S+ I  LE ++G+KL +R  R L++T +G 
Sbjct: 6   LELMGIFVHVVDLHSFTKAADTLQMHRPAVSKSIQQLEDDLGVKLLHRTTRSLSVTAEGD 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++++    + + +      +   +  P G+LRI   + L   +L  +L EF  LYP I+I
Sbjct: 66  EIYQRAKTLLNDVNEMMASV-SPTQPPRGRLRIDAPLALTHAILIPSLGEFQALYPQIEI 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++  D+  +  DC IRL + +  SS I R++  + M   AAP YL     P++  
Sbjct: 125 VLTASDRLTDLVSEGIDCVIRLGE-LVDSSFISRRVGNVRMTTCAAPSYLDKYGTPVTPD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI-- 241
           +L  H  I F        E   W   +D  +   R    + VN+   ++   + G G+  
Sbjct: 184 DLVHHKAIHF--FSEHSREVMEWKYVMDGEVISRRPGSNMLVNNSDVLLSCGLAGLGMLH 241

Query: 242 ----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               AL P      +  L  ++ D  T +  V   +P+      K++ F ++
Sbjct: 242 ALHTALEPHI---QSGRLREVLTDYATITKPVSILFPDRRYLPPKVRVFIDW 290


>gi|33600190|ref|NP_887750.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33567788|emb|CAE31702.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 317

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 126/291 (43%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F  +A +GS T AA +L  S  ++SR ++ LE ++G++L +R  R L L+E G 
Sbjct: 4   LEDLETFIHIAEAGSLTQAARRLDRSLQAVSRTLAALEQDLGVQLVHRSTRRLALSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +         +   ++++ E    PSG LR+   +  G + L   + +++  YP + +
Sbjct: 64  AYYHRIKPAIAAIAQARLDIAERRAAPSGTLRVGAPVLFGPDFLVPVIADYMRAYPQVHV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +   D++ +  D  +R+   +  S L  R+L  +    + AP Y      P   +
Sbjct: 124 DLQLTDAFADLADEGLDLVVRIGD-LPDSGLQGRRLGALRRVVFGAPAYFAQHGRPTHPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H  I    + P        +A   R +G       + N+  +I      G GI   
Sbjct: 183 ELRQHACIV-RTVDPHPGRWVFQIAGKRRTVGV--RGAFRANTMAAIYSAVSAGLGIGYS 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P + ++   D   +  ++ED       ++  + E      K++AF + +  
Sbjct: 240 PLWQIQRLLDAGQVETVLEDFEPRPVPIHVLWQENRLMPAKVRAFVDCLVA 290


>gi|332283392|ref|YP_004415303.1| regulatory protein [Pusillimonas sp. T7-7]
 gi|330427345|gb|AEC18679.1| regulatory protein [Pusillimonas sp. T7-7]
          Length = 297

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 6/293 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  VAR  SFT AA +L ++ S++S  I  LE  +G++L  R  R ++ TE G +
Sbjct: 7   NDLQAFVAVARDQSFTKAAAKLGVTPSALSHTIRALEERLGVRLLARTTRNVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R  + ++ +L      L E   KP+G +RI  T D  +  ++  L  FL  +PDI ++
Sbjct: 67  FMRSIAPLFEQLAAEIEVLGELRDKPAGTIRITCTDDSIEMSVRPMLAGFLKEHPDITLE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             +D    ++  +  D  IRL + +    +  R      +    AP Y +    P +  E
Sbjct: 127 FYIDYGFTNVVEERFDAGIRLGEAVSKDMIAARIGPDWRLVVVGAPEYFERNPIPETPHE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  +  +            + W    D      ++   L  NS   ++   + G G+A +
Sbjct: 187 LTNYACVNI--RYRPSGATYAWEFEKDGQAFTVKVEGQLVFNSMPHVINAALDGIGLAYV 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + +V     +  L  ++ D        +  YP   +++    AF   I  +A
Sbjct: 245 TEELVAPYVADGRLKVVLSDWCPYFSGFHLYYPNRRQSSPAFSAFVEAIRYRA 297


>gi|290509650|ref|ZP_06549021.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289779044|gb|EFD87041.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 295

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 133/284 (46%), Gaps = 6/284 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   GSF+  AE++ +S + +   I  LE  +G++L  R  R  +LT+ G   ++  
Sbjct: 2   FVRVVDRGSFSAVAEEMRISGTMVGLHIKALEEHLGVRLLNRTTRRQSLTDFGQGYYQSC 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   +E ++ +      KP GKLR+   +  G + L     +FL+ + D+ + L+L +
Sbjct: 62  RRILADIEDSESQAFALHQKPRGKLRVGCPVSFGVHALSPVTAQFLIEWTDMAVDLVLSD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           K +D++ +  D  I++ + +  ++L+ R +        A+P Y+K   EP++ +EL  H 
Sbjct: 122 KSMDMADEGLDVMIKIGELLHVNTLVARPIAPYRSVMCASPAYIKRAGEPITPEELCHHR 181

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + F   I         L    +P+  P    +  N+  ++ +  + G GI + P+ ++ 
Sbjct: 182 CLGFAHPIAANEWT---LQREGKPVRAPVNITMTCNNGEALRRAALNGLGIIMQPEILLA 238

Query: 251 DN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++     L+ +M +    +  V+       +   K++ + +F+ 
Sbjct: 239 EDLQHGRLLPLMSEFQPLAKPVHILTFANRQQLPKIRLYVDFLL 282


>gi|207723315|ref|YP_002253714.1| hypothetical protein RSMK00567 [Ralstonia solanacearum MolK2]
 gi|206588513|emb|CAQ35476.1| hypothetical protein RSMK00567 [Ralstonia solanacearum MolK2]
          Length = 309

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 130/290 (44%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F  V   GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS
Sbjct: 4   FKQLETFVAVTTRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + + L   +  +    VK SG LR+      G+  +   + +FL  +PD+ I
Sbjct: 64  AFLEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL+    P  ++
Sbjct: 124 TLDLGDRIVDLVNEGFDCAIRLGD-LPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  HN + FG           W+   D      ++   ++      + ++C+ G G+A 
Sbjct: 183 HLAGHNCLAFG---ASANVQRGWVFQQDGKTVTVKVGGTMECTDGAVLREWCLQGHGLAW 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 240 RSWWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289


>gi|197247928|ref|YP_002145124.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197211631|gb|ACH49028.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 307

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 69  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 189 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 247

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 248 DVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297


>gi|187924251|ref|YP_001895893.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715445|gb|ACD16669.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 294

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS T AAE+  +S + + + I  LET +  +L  R  R  +LTE G + +
Sbjct: 7   MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLETRLATRLLTRTTRRQSLTEIGRQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L++   +  G  +    + EFL  +PDI ++L 
Sbjct: 67  EQCRRILADVKGAESLAEAMAAAPRGVLKVTVPLTYGVEVFSPAMTEFLSAWPDITLELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ ID+  +  D ++R+ + +  SS + R L    M A A+P YL     P + ++L 
Sbjct: 127 LSNRIIDLVEEGFDASVRIGR-LPDSSFVARPLKPYRMRACASPAYLARAGTPRTPEDLM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F   +    E    L   +    + R    + N+  ++    + G G+ L P+ 
Sbjct: 186 HHECLGF---LHWGREGLWRLGGDNADECQLRAGRFRANNGQALKVAALHGFGLVLQPEA 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++     +  LV ++ED +     V+  YP   + T KL +F +F+  +
Sbjct: 243 LLAREIASGELVSVLEDYLPDGAPVHLLYPRDRRATPKLTSFIDFVVER 291


>gi|186475748|ref|YP_001857218.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192207|gb|ACC70172.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 324

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 115/299 (38%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + + A     LS +  S +I+ LE  +G +L +R  R ++LT+
Sbjct: 17  RLDLLDVALFVRAALLANVSAAGRDFGLSPAVASARIANLEKLLGARLLHRTTRRVSLTQ 76

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G         +       +  +     +P G+LR++     G+  +   +  FL  YP 
Sbjct: 77  EGEVFMARAETLLDAAAAARASVGRGQAEPQGRLRVSMPSSFGRQHVSPVIAAFLRRYPG 136

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L +  +D+     D  IRL   ++ S+L+ R+L         AP YL     P 
Sbjct: 137 VSVDLRLTDTIVDLVDAGVDVGIRLGA-LKDSTLVARRLAANRRVICCAPSYLAEHGTPH 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +   D             T   P+       L  ++   I    + G GI
Sbjct: 196 HPSDLAQHECVILADQRDWS------FVTPAGPLSVRVGGRLATDNGEVIRDALLAGFGI 249

Query: 242 ALLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           AL   + V     +  LV ++E      +  ++  YP       K  AF +F+     D
Sbjct: 250 ALKSTWDVAPYLRSGELVTVLESYPLAETVAIWAVYPSRAFVPPKTVAFIDFLAAHFGD 308


>gi|296163090|ref|ZP_06845863.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295886678|gb|EFG66523.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 294

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 133/289 (46%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS T AAE+  +S + + + I  LET +  +L  R  R  +LTE G + +
Sbjct: 7   MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLETRLATRLLTRTTRRQSLTEIGRQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L++   +  G  +    + E+L  +PDI ++L 
Sbjct: 67  EQCRRILADVKDAESLAEAMAAAPRGVLKVTVPLTYGVEVFAPAMTEYLTAWPDITLELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ ID+  +  D ++R+ + +  SS + R L    M A A+P YL     P + ++L 
Sbjct: 127 LSNRVIDLVEEGFDASVRIGQ-LPDSSFVARPLKPYRMRACASPAYLARAGTPRTPEDLM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + F     +           +  +   R    + N+  ++    + G G+ L P+ 
Sbjct: 186 QHECLGFLHWGREGSWRLGGETADENHL---RAGRFRANNGQALKVAALHGFGLVLQPEA 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++     +  LV ++ED +     V+  YP   + T KL +F +F+  +
Sbjct: 243 LLAREIASGELVSVLEDYLPEGVPVHLLYPRDRRATPKLTSFIDFVIER 291


>gi|218662152|ref|ZP_03518082.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 245

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 117/218 (53%), Positives = 153/218 (70%), Gaps = 1/218 (0%)

Query: 82  IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYAD 141
           ++L E++  PSGKLR+ TT+ LGQ  L   ++EFL LYPD+QIQLILDN+++D++M +AD
Sbjct: 1   MQLTETTETPSGKLRVTTTVGLGQGWLTDKIQEFLQLYPDVQIQLILDNEEVDVNMRHAD 60

Query: 142 CAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKC 201
           CAIRLR+P Q S LIQRKL T+HMH YAAP Y+    EP  I++LD H +ITFG+  P  
Sbjct: 61  CAIRLRQP-QQSDLIQRKLFTVHMHVYAAPSYINRHGEPQKIEDLDNHRIITFGEPAPSY 119

Query: 202 MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMED 261
           + D NWL    R     RI  LQ+NS  SI + C+LG G+A LPDYIV  +P L+++  +
Sbjct: 120 LLDVNWLEVAGRSSDNKRIPHLQINSQTSIKRACLLGIGVACLPDYIVGRDPGLIQLAIN 179

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
              PSF  YFCYP+ +KN  KLKAFR+FI  KAR+W F
Sbjct: 180 ADVPSFDTYFCYPDEIKNAAKLKAFRDFIVSKARNWNF 217


>gi|78066424|ref|YP_369193.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967169|gb|ABB08549.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 305

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 129/287 (44%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +  +GS T A++   L+   +S  +  LE  +G +L  R  R L+LTE G   +
Sbjct: 7   MRIFTRIVETGSLTRASDTTGLTTPRVSAMLRTLEQHLGCRLLNRTTRRLSLTEDGQSYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  +  +   P G+L++     + + +L   L  FL   PDI I+L 
Sbjct: 67  ERCIAVLREIDDMEASVSRARSAPRGRLKVNLPPAMAKQILVPALPAFLASNPDITIELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ ID+  +  DC +R+   +  S LI +++  +     AAP Y++    P ++ +L 
Sbjct: 127 ATDRHIDVVGEGVDCVVRIGA-LDDSGLIAKRIGDLTTCTCAAPSYIERYGVPETVGDLT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I    + P       W   +D      ++ + + VN   + +   V G G+     
Sbjct: 186 RH--IAVNHVSPDTGRPRIWDFVIDGEARIAQMCASVAVNDADTYIACGVAGIGLIKTSL 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+V     +  L  ++ DV +P   +   YP       KLK F +++
Sbjct: 244 YLVTPYLASGELREVLTDVNSPPRPISVVYPPNRHIPAKLKIFVDWL 290


>gi|254245344|ref|ZP_04938665.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124870120|gb|EAY61836.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 316

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 124/299 (41%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 16  PLDLLDVALFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 76  DGEVFMARADALLAAADAARASVGRGRSEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPS 135

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  D  D AIRL   ++ S+L+ RKL T       +P YL     P 
Sbjct: 136 VSLDLRLSDEIVDLVDDGYDVAIRLGA-LKDSTLVARKLATNRRVLCCSPAYLAERGTPR 194

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +  GD             T   P+       L  ++  +I +  V G GI
Sbjct: 195 HPADLTQHECVILGDQRDWS------FTTPQGPLTVRVGGRLVASNGEAIREALVDGFGI 248

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     +  LV +++D        ++  YP       K  AF  F+     D
Sbjct: 249 AIKSTWDVGPLLASGALVSVLDDYPFADDVAIWAVYPSRAHVPLKTLAFIAFLAEHFGD 307


>gi|325121643|gb|ADY81166.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 311

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 130/298 (43%), Gaps = 4/298 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   A  GSF+ AA  L L+ +++SR ++ LE  +G++LF+R  R LTLTE G
Sbjct: 3   TLSNLESFIRSAEHGSFSAAARHLALTPAAVSRNVAQLEQNLGVRLFHRSTRNLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +  + ++++  E    S  P G L+I+ +   G   +   + EF+  YP+I+
Sbjct: 63  EHFFNNIRDNLNSIQSSISEFNTGSSSPKGILKISLSPGFGVEYILPLMPEFINRYPEIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  L NK +++  D  D AI     +    +++R L  +HM   A+P +LKN   P   
Sbjct: 123 LEWHLSNKQVNLITDNFDVAIGSGVKL-GLGIVKRPLSPLHMIIAASPAFLKNKVLPRHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q++   + I         + ++ +L              L  +   ++ Q   LG GIA 
Sbjct: 182 QDISGWDGIIMRSPQTGKLHEYKFLGPNSEQAYLNLNEKLVADDPSALHQGAALGMGIAA 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +     K    N  L+RI+ D           +        K + F +F+  K  + K
Sbjct: 242 ISTAHAKSYIANGTLIRILPDWYADLGETNLYFSSKKHMPAKTRCFIDFLVEKFEELK 299


>gi|317404306|gb|EFV84734.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 306

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 128/294 (43%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ AAE L + +++++  I  +E  +G +L  R  R + LT 
Sbjct: 1   MDRFQEMQVFVRIAERRSFSKAAEDLRIPRATVTNLIKRMEKRLGARLLERTTRQVRLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   LE         +  P G LR+     L +  +   L  FL  YPD
Sbjct: 61  DGEAYYRRCVRLLADLEEADGAF--LNTAPKGLLRVNMQGTLARVFVMPALPGFLERYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L  D++ +D+  +  DC +R    +Q SSL+ R++  +     A+P YL    EP 
Sbjct: 119 LVLHLGEDDRLVDLVREGVDCVLRAG-TLQDSSLVGRQIALMPQVTVASPAYLARYGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L+ H  + +           +++      +  P  S + VN         + G G+
Sbjct: 178 TVDDLEGHRAVDYVSSSTGRSVPLDFMVDGRNVLARPG-SVVSVNGAELYASAALAGLGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V D+     L  ++         V   YP+  + + +++ F  ++  
Sbjct: 237 IQVPRYRVADDLAAGRLKVVLPGAPPAPMPVSVLYPQNRQVSARVRVFSQWLAE 290


>gi|205356892|ref|ZP_02342928.2| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205325836|gb|EDZ13675.1| LysR substrate binding domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 300

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 5/293 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F  VA   SF+  AE + L + S+SRQI  LE ++GI+L +R  R + LT+ G   
Sbjct: 7   AMKLFVRVAERESFSRVAEDIGLPKGSVSRQIQALEHQLGIRLLHRTTRRVQLTQDGMVY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   L+  +   Q      SGK+R+     L  +L+   L  FL  YP I ++L
Sbjct: 67  YERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCLANSLIMPRLPTFLHQYPGIALEL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  +  DC +R  +P+ +  ++ R L  +     A+P YL     P ++ +L
Sbjct: 127 CSSDRQVDLLREDFDCVVR-TEPLHAPGILTRPLGKLRRVNCASPQYLARFGYPENLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +  L P          T            L VNS  +    C+ G GI   P 
Sbjct: 186 ASHAMVHYS-LTPGVSSPGFAFETPHGMQWVKTGGMLTVNSTETWHTACLAGLGIIQTPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V++      L+ I+         V   YP     + ++  F  ++    ++
Sbjct: 245 IAVREALRAGTLIEILPQYRAAPLPVTLHYPHRRNLSRRVHLFMVWLTETIKE 297


>gi|209546445|ref|YP_002278335.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539302|gb|ACI59235.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 294

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 121/296 (40%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V  +GSF  AA    +S + +++ I  +ET +G KL +R  R   LTE
Sbjct: 1   MDKLAGMAMFVRVIDNGSFAAAAGIAQVSPAMVAKHIKTIETRLGAKLIHRTTRRHQLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +        ++   +    E    P G+LR+   +  G  +L   L ++   YPD
Sbjct: 61  VGQLYYERCKRALSEVALAEASASELQSAPRGRLRLVAPVSFGTQILVPALVDYQNAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L LDN   D+  +  +  I +  P+   SL+ R L        A+P YL     P 
Sbjct: 121 VSIELSLDNNVHDLVGEGFELGIHIG-PLSDDSLVARPLTPYRRILAASPDYLARHGRPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S + L  H  +         M+D   L      + +  IS     N   ++    + G+G
Sbjct: 180 SPEALTNHLCLGHSY---WRMQDRWHLVGPGGEMRDVLISGKFSTNQGAALRMAAISGAG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I L P+ ++  +     L +++ +       +   Y    + T  L+   +F+  +
Sbjct: 237 IVLQPELLLAADIAEGRLEQVLPEWSYKPVPMSLVYAPNRRPTAMLRTVIDFLVER 292


>gi|163761395|ref|ZP_02168469.1| putative LysR transcriptional regulator [Hoeflea phototrophica
           DFL-43]
 gi|162281390|gb|EDQ31687.1| putative LysR transcriptional regulator [Hoeflea phototrophica
           DFL-43]
          Length = 302

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 6/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           ++ ++L  F  V  +GSFT AA++L ++++ +S QI+ LE E+   L  R+ R ++ TE 
Sbjct: 5   YNLNRLAYFAAVVETGSFTRAADRLKVTKAVVSSQITQLEQEIQATLLIRNTRKVSPTEA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  + +    EL + +  P+G LR+    D G  ++   +  F   YP  
Sbjct: 65  GEAFYARCATILAEADEAFEELSQMTAVPAGTLRLTAPNDYGTAIVTPVVAAFRRQYPFC 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++   L     D+     D AIR+   +  S+L  RK+ +          Y+        
Sbjct: 125 KVDFHLGESRSDLMTGELDLAIRVGW-LTDSALQARKIGSFRQVLVGGSDYVSGLPAIAH 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L   + ++   +    M  F    T    +     + L ++S  ++++    G+G+A
Sbjct: 184 PDDLRTADFVSNALMTDPDMWRFT--NTKGNEVTVRMENTLSIDSTPALLEAVKAGAGLA 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +LPDY+V+D      L  I+         +Y  YP +     K+ AF + + L 
Sbjct: 242 VLPDYLVQDQLQTGKLQIILPGWSLRDGGIYTVYPPSRFRPAKVTAFVSMLMLA 295


>gi|104780507|ref|YP_607005.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95109494|emb|CAK14195.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 305

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 136/289 (47%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F  V+   SFT A + L L +S++S Q+  LE  +G +LF R  R + +T+ G+
Sbjct: 4   LELLRTFVRVSELCSFTQAGDSLGLPRSTVSEQVRALENLLGTRLFNRTTRRVQVTQDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+  + ++   ++  +   +    + +G+LRI     + + ++   L  FL  +P +++
Sbjct: 64  LLYERSKDLLSGMDEIESLFRTDDAELAGRLRIDLPTMMARRVIVPALPGFLERFPRLEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D+  +  DC +R+   +    ++ R +  + M   A+P YL+    P S+ 
Sbjct: 124 EISCTDRQVDLLREGFDCVMRIG-TLGDLDVVARPVGRLSMCNCASPAYLERHGIPRSLS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+L+ +   +    + F +    +    +     + VN+  +    C+ G G+  +
Sbjct: 183 DLADHSLVHYVRTLGARSQGFEYEQDGELRF-QAMGGVVTVNNAEAYSAACLAGLGLIQV 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V ++     LV ++E     +  V   Y        +++AF N++
Sbjct: 242 PVVGVDEHLRRGELVSVLEPWQAQAMPVSLLYARQRHVPRRVQAFMNWL 290


>gi|26991344|ref|NP_746769.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24986407|gb|AAN70233.1|AE016663_1 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 298

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 133/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+VF  V   GS + AAEQ+  + S++SR +S LE ++G  L  R  R + LT
Sbjct: 1   MKTRSEELQVFVAVIDCGSISAAAEQMGQTPSAVSRTLSRLEGKLGTTLVNRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  +++  +  L  +   P+G+LRI        + +   + EF   YP
Sbjct: 61  EEGRYFLERARLILQQMDEMEERLSMNRQTPTGRLRINAAAPFMLHAILPWIGEFRRQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D+  ID+     D AIR+ + +  SSL  R L    +   A+P YL+    P
Sbjct: 121 GIELELNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARSLGCSPVQVLASPAYLEQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L  H L+ F              A  DR    P    L  +S  ++ Q  + G G
Sbjct: 180 RQVEDLANHCLLGFSQPESLNHWPLRH-AQGDRWSIRP---TLVASSGETLRQLALAGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L  ++  ++     L  ++ +        ++  Y    +   +++ F +FI  K   
Sbjct: 236 IVSLSHFMTHEDIRTGRLQVLLSEANNGYRQPIHAVYYRNTQLALRIQCFLDFIQRKLAM 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|307729657|ref|YP_003906881.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584192|gb|ADN57590.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 303

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 129/298 (43%), Gaps = 11/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  VA+  SF+ AA  L +  S++SR++S LE  +G+ L  R  R L+LT QG
Sbjct: 6   DLNDIAVFVRVAQLESFSRAAHALGMPVSTVSRKVSALEERLGVTLLQRTTRKLSLTAQG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  SE    L   +  + ++  KP G LRI+  + L Q      L  FL  YP I 
Sbjct: 66  RAYFDQCSEPLSHLYDAERVITQTQKKPEGLLRISGPVMLEQEPFYAFLSAFLKDYPQIH 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   N  +D+  +  D AIR  + ++ SSLI +++         +  Y +    P   
Sbjct: 126 VDLYFTNAFLDLIAENVDVAIRFGE-LRDSSLIAQRVGRSVRQLVVSAEYARTRPLPSQP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H  +       +       L    + +       +    +  +  + + G GIAL
Sbjct: 185 DELSQHPCVLINARNNESEWH---LVNGRKSVKVHVTGPVAARDFHVVSAFALRGHGIAL 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LP         +  LVR++ +  +P   V+  YP       +L+AF + +    R W+
Sbjct: 242 LPSSYCDPRIASGELVRVLPEWSSPEIFVHAVYPTRRFMPSRLRAFLDAL----RAWQ 295


>gi|251790814|ref|YP_003005535.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247539435|gb|ACT08056.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 311

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 123/290 (42%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D L  F  +A  GS T  A +  LS  ++S++++ LE  +G++L  R  R L LT +G
Sbjct: 3   SIDDLLFFSRIAALGSLTAVARESGLSLPAVSKRLTQLEQRLGVQLIRRTTRRLDLTPEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    + H++E  + +++ + +   G+L +  +   G+  +   +  F   + +++
Sbjct: 63  QLYAEGALPILHEIEELESQVRRNQLTLRGRLSVNASFGFGRRHIVPLISAFARRHRELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL L ++ +++     D  IR   P   S L+  +L+       AAP YL  C  P ++
Sbjct: 123 VQLQLTSQPLNMLDAGVDIDIRFGAP-PDSRLVAYQLMKNPRVLCAAPAYLTRCGTPQTV 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN +                    R         L  N    IM+Y + G GI L
Sbjct: 182 ADLAGHNCLVLRQYESDYGLWR--FYRDGREFTHRAFGNLSANDGEVIMRYALDGHGIIL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V+    +  LV ++ D   P   +Y  Y +      ++ AF  ++
Sbjct: 240 RSLWDVRPWLASGELVALLPDYTMPEADIYAVYQQRRHVPARISAFIAWL 289


>gi|209515971|ref|ZP_03264832.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503629|gb|EEA03624.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 330

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 129/296 (43%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L  F  +A   SF+ AA  L LS S++S  +  +E+ + ++LF R  R + LTE G 
Sbjct: 11  LAELTAFITIAEQRSFSAAARVLGLSPSALSHAMRNMESRLDVRLFNRTTRSVALTEAGE 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R        L+    E+  +  +PSG +RI+ +    + L++  L +F   YP+I +
Sbjct: 71  QLLRRVRPALADLDDAVGEVTAARNRPSGTIRISASESSAKQLVRHVLPDFFARYPEIHV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + ++D++ +DI  +  D  +R+ + +    +  R    + + A A+P YL     P +  
Sbjct: 131 EFVVDSRLVDIVAEGLDAGVRVFEDVPRDMIAIRFGRDMRLGAVASPDYLARHPAPKAPH 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I F             L    +         + + +   +++  + G GIA +
Sbjct: 191 DLMQHRCIRFRFESGTLYRWD--LTHRGKSASLDVDGPMTLGNVNLMVEAALAGIGIAWV 248

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P   V ++     LV+++ +       +   YP        L+ F +      R W
Sbjct: 249 PLDHVAEHVASGRLVQLLPEWSPTFAGLCLYYPANRHPPAALRLFAD----AVRAW 300


>gi|194434385|ref|ZP_03066648.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|194417369|gb|EDX33475.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|332095957|gb|EGJ00964.1| hypothetical protein SD15574_1256 [Shigella dysenteriae 155-74]
          Length = 302

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAAQVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + ++  ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELEAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED  T        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|66048147|ref|YP_237988.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258854|gb|AAY39950.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 300

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 132/286 (46%), Gaps = 12/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F     +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L LT +G + +
Sbjct: 12  MSCFVRAVETGSFSAAGRDLGLGQPNVSRYVAALEDHLQTRLLHRSTRKLMLTPEGERYY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E ++  L+ +   PSG LR+A    L    +  ++  FL  YP++ + L 
Sbjct: 72  ADALRILDSVEQSESSLRGNVA-PSGLLRVACPTALAHTFIVPHVASFLARYPELSLDLQ 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +++  +  + AIR+   ++ S++  R L +      A+  YL+    P S  +L 
Sbjct: 131 INDRYVNLIDEGVELAIRIGH-LEDSAMRARPLASFERVCVASRAYLEKRGSPSSPDDLK 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ + +  L       F       +    P    L+VNS  +I +Y   G GIA  P +
Sbjct: 190 EHDCLIYTLLSTGTNWRF-------KNTDVPVSGRLRVNSPEAIREYVNAGLGIAQGPQW 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + ++   + NL  ++ + + P   + F Y        +   F +F+
Sbjct: 243 LYEEGLRSGNLQLLLNEYVAPPVPIQFVYLANRLLPQRAIVFMDFM 288


>gi|24372117|ref|NP_716159.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24346007|gb|AAN53604.1|AE015500_3 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 310

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 137/299 (45%), Gaps = 8/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L L+++++SR+I+ LE + G +L +R  R L LTE 
Sbjct: 1   MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELEADTGTQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   +++   L++ + +L        G L+I   I+LGQ  L     +FL LYPDI
Sbjct: 61  GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAKFLTLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I   L N+ +D+  +  D   ++      S L    LV  +    A+P YL     P  
Sbjct: 121 TIDAELTNRKVDVIEEGIDLLFQIADS-HDSRLQSYSLVNAYKSLMASPKYLAEHGTPKV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L KH  I    L    +E    L      +    ++ L VN+     +  + G GI 
Sbjct: 180 PQDLAKHKAI---RLQSAHIEGAWKLFDGKSWVVIEPVTQLTVNNVTIAREAAIAGLGIT 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDW 297
            +P  I ++      LV +++D       V   YP+      K + F  FI+    + W
Sbjct: 237 AVPSIIAQEAVEKGYLVPLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIYAALFKRW 295


>gi|312882550|ref|ZP_07742291.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369950|gb|EFP97461.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 314

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 126/291 (43%), Gaps = 7/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  +F+ AA+ L +S S +S++++ LET +GIKL  R  R  T T  G + 
Sbjct: 8   QMVVFAALVKHKNFSLAAKSLGVSASHVSKKLAQLETSLGIKLIERTTRAFTPTLAGLRF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +++   +   ++E++    + SG +R+  +   G   +   ++     YP + +++
Sbjct: 68  YDHCADLLTIVSNAELEVESQRDEVSGVMRLGLSQSFGTLHIIPAIETLRQRYPKLDVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  +   + I     + +++      A A+P YL N + P    +L
Sbjct: 128 HLFDYQVDMLEEGLDLWVTNNECIP-QGYVAQRVADSKFVAVASPEYLVNHKAPCEPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN + +              +   + +         V+   +I    + G GIA L  
Sbjct: 187 KHHNCLIYRGWQRHYNSWA--FSKSSQHLNIKVSGNYTVDLAEAIRDAAIAGWGIAYLAT 244

Query: 247 YIVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y++KD   N  L++++ D         Y  YP       K +A   FI  K
Sbjct: 245 YLLKDEFKNGQLIQLLPDWQASQNMPFYAVYPSRRYLPKKTQAVIEFIKEK 295


>gi|262278167|ref|ZP_06055952.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258518|gb|EEY77251.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 308

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 12/301 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              +  + +F +VA + SF+ AA    +S +++SR I+ LE  +   LF R  R + LT 
Sbjct: 7   RMMFSSVELFCLVAENESFSKAALHAGVSPAAVSRSIARLEKHLATPLFVRTTRQVRLTP 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG        +  +++   + +L+    +PSG +RI+     G   +   L +F   YP 
Sbjct: 67  QGKMYFEECKQALNQILEAEQQLKNQKQQPSGLVRISVPTPYGHYRILPLLAKFSKQYPA 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L NK++D   +  D AIR  +    S+LI R+L    +   A+P YLK    P 
Sbjct: 127 IEVDVQLTNKNVDFIAEGYDLAIR-GRLFADSNLIARQLEQAELIVVASPQYLKQFGIPQ 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVL 237
           SI++L  H  I F  ++P   ++  WL   +  I E     +I CL  +  L  +     
Sbjct: 186 SIEDLQHHQCIQF--VLPSTGKNVQWLFNSNHQIIEYQSTGKIRCL--DDILGTITLAKH 241

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +G+     +IV+    N  L+ I+      S      YP     +  ++ F +F+  + 
Sbjct: 242 SAGLLQTYRFIVEKELKNGELIEILTKFSGTSRPFSLLYPLKKHESFHIRVFIDFLIKEL 301

Query: 295 R 295
           +
Sbjct: 302 K 302


>gi|146284334|ref|YP_001174487.1| transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145572539|gb|ABP81645.1| probable transcriptional regulator [Pseudomonas stutzeri A1501]
          Length = 304

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 119/293 (40%), Gaps = 10/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +GSF+ AA  L  + S++SRQ++ LE  + ++L  R  R L L E G++ +
Sbjct: 13  MAVFVRVVEAGSFSGAARLLGSTPSAVSRQVARLEQALALRLLERTTRQLRLNEAGAEFY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++    +      +     P G +R++     G+ ++   +  FL  YP++ +QL 
Sbjct: 73  QHCRDMLDAADAAVAIGERLMRSPRGLVRLSVPKAYGKFVVGPAMPAFLQRYPEVDVQLR 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  D+  D  D  +++        L  + L  +     A+P YL+   EP   Q+L 
Sbjct: 133 ISDQSPDLIEDGFDLLVQVTDN-PPEGLAGKPLGPVRQLLCASPDYLQRHGEPQHPQDLL 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ +  G+           L   ++            N   + +   + G GI  LP +
Sbjct: 192 RHSCLYLGETAGDNRWH---LRRGEQQETVTVRGRYISNHSEARLLVALAGLGITCLPHF 248

Query: 248 IVKD---NPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                  +  L  ++       +     +  + +      K +A  +++    
Sbjct: 249 TAAQALADGQLREVLPQWRYTGSYQGAAWLLWRQNHHLPPKTRALIDYLSEAL 301


>gi|148258304|ref|YP_001242889.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410477|gb|ABQ38983.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 294

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 145/301 (48%), Gaps = 12/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++ F  VA    F  AA +L LS S+++R I+ LE  +G++L  R  R +TLT+
Sbjct: 1   MDRIDAMQAFVTVADLNGFAPAARRLKLSPSAVTRLIAALEAHLGVRLLQRTTRSVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +    T  +   LE  ++  +   ++P+G+L ++  +  G+  +   +  +L  Y +
Sbjct: 61  AGRRYLERTRRILADLEEAELAAESERLQPAGRLVVSAPVGFGRLHVGPVMAAYLSRYAE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +L L+++ +++  D  DCA+R+   +  SSL+ R++ ++      AP Y K+  EP 
Sbjct: 121 VAAELRLEDRQVNLVEDGVDCAVRIGH-LGDSSLVARQVGSMRRVVVGAPAYFKDHGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L KH  I FG       +D+   A   + +       L  N+  + +QY   G G+
Sbjct: 180 TPEALAKHQTIQFG-----AADDWR-FAKDGKELRIAVSPRLVTNNADTAIQYAEAGGGV 233

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +  Y   D      L R++     P   ++  +P +   + K++AF + +     DW+
Sbjct: 234 TRVMAYQAADGLRGDRLKRVLAKYEPPPVPIHIVFPSSRLLSAKVRAFID-LIATTCDWR 292

Query: 299 F 299
           F
Sbjct: 293 F 293


>gi|239833452|ref|ZP_04681780.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239821515|gb|EEQ93084.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 378

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 149/301 (49%), Gaps = 8/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +++VF  V  +GSF+ AA  L ++ S+IS+ IS +E  + ++L  R +R L+LT
Sbjct: 78  MDNRIGEMQVFMRVVEAGSFSEAARLLRMNPSTISKLISRIEARLSVRLLERSSRRLSLT 137

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   +  +  +    E  + EL + S    G +R+  ++ LG   L+  L EFL  YP
Sbjct: 138 SEGQIYYERSQGLLRDFEEVERELSQGSASTGGTVRVNASVALGTLALEPLLPEFLAAYP 197

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I I L L ++ +D+ +D  D A R+   + +SS++ RKL T      AAP YL+    P
Sbjct: 198 NIVIDLSLSDELVDLYLDRTDVAFRIG-TLPNSSMMARKLGTARRKIVAAPAYLERRGTP 256

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++ +L +HN I F       +     L    R +       L  N+  ++ +  V G G
Sbjct: 257 MTVDDLAEHNCIGFNFRRAAPVWP---LKESGRIVDRAVYGSLLANNGETVRRMAVAGLG 313

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +A + DY  +++     LV ++ + +   +  V+  +    +   +++ F +++  + + 
Sbjct: 314 LARIGDYHARNDLASGALVEVLSEAVENDTEEVHAVFLGGARLPQRVRVFLDYVVPRLQA 373

Query: 297 W 297
           +
Sbjct: 374 Y 374


>gi|237731338|ref|ZP_04561819.1| LysR family transcriptional regulator [Citrobacter sp. 30_2]
 gi|226906877|gb|EEH92795.1| LysR family transcriptional regulator [Citrobacter sp. 30_2]
          Length = 297

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 126/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L    +VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLYYLIIVARERSFTRAAAKLGVSQSALSHAIRGLEERLDVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S  +  +ET  + L +   + +G +R+       Q+ +   L+ FL  YPD+ 
Sbjct: 65  ERLINSISPRFDDIETELLALTDVRQRVAGNIRLTLGEHALQSTVWPALEPFLQAYPDVN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  IRL + +    +  R      M    +P Y     +P + 
Sbjct: 125 VEMTIDNSLTDIVTGRYDAGIRLGEQVAKDMVAVRIGPDWRMVVVGSPVYFARHGKPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+ I     +P     + W    D      R+   L  N+    +   + G G+A
Sbjct: 185 HDLQNHSCINM--RMPTLGGLYAWEFAKDGQDLRVRVEGQLIFNNLPPRISAAMAGMGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V+       L +++ED   P    Y  YP   ++T         +
Sbjct: 243 FVPEDTVEQAVAEGALEKVLEDWCEPFPGYYLYYPSRKQHTAAFAQLIEAL 293


>gi|15890397|ref|NP_356069.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15158618|gb|AAK88854.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 301

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 141/289 (48%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   G F+ AA   +++ S++S+ I+ LE+ +G +L  R  R L +T +G   
Sbjct: 11  EMEIFVRVVELGGFSRAAAAANMTPSAVSKLIARLESRLGARLLNRSTRQLQITPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   + +   LE  +    E   +P G++RI T+     ++L   L  FL L+P+I + +
Sbjct: 71  YERATRILADLEEAERAAGER-ERPIGRVRINTSASYATHILAPILPRFLALHPEITLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +  +D+  +  D A+R   P++SSSL+ RKL    M   AAP YLK C  P +I +L
Sbjct: 130 VQTDLVVDLLAERMDVAVRAG-PLKSSSLVARKLGETRMVIAAAPDYLKRCGVPQTISDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + HN +  G            L    + +  P    +QV+    + +  + G G+  L  
Sbjct: 189 EGHNCLALGYARSIDGWP---LQDGGKTVVIPATGRVQVSDGEGLRRLALAGVGLVRLAA 245

Query: 247 YIVKDN---PNLVRIMEDVIT-PSFTVYFCYP-EALKNTGKLKAFRNFI 290
           + ++++     LV +++ + T  + T +  Y  +      +++A  +F+
Sbjct: 246 FTIREDIAAGRLVSVLDHLDTGETETFHAVYVGQRGPLPSRIRALLDFL 294


>gi|15641062|ref|NP_230694.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587378|ref|ZP_01677148.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121728178|ref|ZP_01681213.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147674833|ref|YP_001216517.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153800951|ref|ZP_01955537.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|153819385|ref|ZP_01972052.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153822372|ref|ZP_01975039.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|153824937|ref|ZP_01977604.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|153828117|ref|ZP_01980784.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|227081222|ref|YP_002809773.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|254226381|ref|ZP_04919969.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|254291730|ref|ZP_04962516.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|254848178|ref|ZP_05237528.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297578653|ref|ZP_06940581.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298498842|ref|ZP_07008649.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9655514|gb|AAF94208.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121548381|gb|EAX58443.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121629575|gb|EAX61998.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|124123542|gb|EAY42285.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|125621070|gb|EAZ49416.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|126510066|gb|EAZ72660.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126520079|gb|EAZ77302.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146316716|gb|ABQ21255.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|148876359|gb|EDL74494.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|149741449|gb|EDM55479.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|150422323|gb|EDN14284.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|227009110|gb|ACP05322.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227012865|gb|ACP09075.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|254843883|gb|EET22297.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297536247|gb|EFH75080.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297543175|gb|EFH79225.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 299

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 144/293 (49%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   D L +F +V  +GS+T  +++  +  ++I+R+I  LE  + ++L  RHAR LTLTE
Sbjct: 8   TMKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTE 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + ++  S +  +L +   E+ +     SG++RI+   +L + ++      F+  YPD
Sbjct: 68  AGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPD 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L++ N+  D+     D   R+  P + SSLI RK+  +     A+P YL +  +P 
Sbjct: 128 IHIELMMSNQADDLDPTEWDVIFRVG-PQRDSSLIARKIGEVKDILVASPQYLSSHPQPT 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H L+         +  +    +    +        Q ++   +   C  G GI
Sbjct: 187 HAEELHQHQLL-----KGYPLLKWQLTNSQGETVVNSDRGRFQASALNVVRSACSEGLGI 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L+PD +++   ++ +LV+++ D  +    +Y  Y        K++ F +F+ 
Sbjct: 242 TLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 294


>gi|307609093|emb|CBW98533.1| hypothetical protein LPW_03631 [Legionella pneumophila 130b]
          Length = 287

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 135/290 (46%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  V     F  AA +  +S +++SRQI+ LE E+  +L  R  R L+LT+ G+
Sbjct: 4   FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   +   +L   +I +  S  +  G L + ++       L   L EF+ L P +QI
Sbjct: 64  RYYQQCKKTLLELNEAEIAIASSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123

Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  +  D++ +  D    + +  P     L+++++ T      A+P YL     P S
Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGP---PELVRKRVSTTRYVLCASPDYLAKNGIPKS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL KH  IT     P  +  F      ++   EP    L +N   ++ +  +LG GI 
Sbjct: 181 PSELGKHRYITHSMRNPDNLVTF---KDNEQIYVEP---VLWLNDSRALCECALLGMGII 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L +YIV +   +  L+ ++ +    S +VY  Y  +     K++ F +F
Sbjct: 235 KLHEYIVAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284


>gi|269964039|ref|ZP_06178345.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831258|gb|EEZ85411.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 299

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 138/294 (46%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++ VF  V  +GS + AAE L L+ S+ SR ++ LE+++   L  R  R + LT
Sbjct: 1   MKATLDEMNVFVSVVDTGSISAAAELLSLTTSATSRALARLESKLNTTLLNRTTRRIELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   ++  +  L     KPSG LR+        +++   + ++   YP
Sbjct: 61  EEGQLYLDRVRNILASVDEAEDMLVGDKGKPSGLLRVNAASPFMLHVVAPLVAQYQQEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  + ++ID+     D AIR+ + ++ S++   +L T  +   A+P YL     P
Sbjct: 121 EIELELTSNEENIDLLGKRTDIAIRIGQ-LKDSTMRAARLATSSIRVLASPEYLAQHGNP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL++H L+ F     +     +W    +          ++  S  ++    + G G
Sbjct: 180 KSVKELEQHRLLGFS----RFEFLNDWPLQTEAGELLRIKPVVKAESGETLRVMALKGDG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
           +  L D++ +++     LV ++ +        ++  Y      + ++++F +F+
Sbjct: 236 VVCLSDFMTQNDRRNGRLVEVLPESRLDIRQPIHAVYYANAVASARVRSFIDFL 289


>gi|213969931|ref|ZP_03398064.1| transcription regulator preotein [Pseudomonas syringae pv. tomato
           T1]
 gi|213925256|gb|EEB58818.1| transcription regulator preotein [Pseudomonas syringae pv. tomato
           T1]
          Length = 305

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 131/296 (44%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      ++VF  +A  GSFT  AE + + +  ++R I  LE  + ++LF R  R + LT
Sbjct: 1   MDL-LQSMQVFAKLAELGSFTRVAEAMQVGRPHLTRIIQDLEASLDVRLFQRTTRSVKLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G + +         L  T      +     G+LRI   +   Q      L+ F   +P
Sbjct: 60  AEGQRFYERVKSNLADLAETTSMFDRNGSTLRGRLRIDIPVAFSQRSFMETLRGFTRAFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + L + ++ +D+  +  DCA+R+ + +  SSL+ R +    M   AAP YL+    P
Sbjct: 120 DIDVVLGVTDRTVDLVAEGIDCALRIGE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGS 239
            ++++L +H  ++F  L  +      W  +++   +  P    + VN   + +Q  + G 
Sbjct: 179 ETLEDLKRHCGVSF--LSGQNNRPLPWHFSLNGEDLPYPAQGAITVNESNAYVQCGLAGF 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI   P   V+    +  LV ++E        V   YP       +++AF  ++  
Sbjct: 237 GILQAPGITVESFLASGELVEVLEAYRPLPRPVSVLYPSRTHLAPQVQAFVEWLRA 292


>gi|260431147|ref|ZP_05785118.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414975|gb|EEX08234.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 304

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R L+ T
Sbjct: 1   MSY-LDNIRTFVRVYDLGSMSAAGRDLRISPAVTSARISQLEDHLGVRLFQRTTRNLSPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++  + ++   +  P G L +A  + +G+ L+   + EFL  YP
Sbjct: 60  EQGRAFYPGAVAVLDAVDQAEAQVMHLTEAPRGTLFVAAPLGVGRRLIAPQVPEFLDKYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L L ++ +D++ +  D A  +  P + S+L  RK+        AAP Y+     P
Sbjct: 120 EIDVRLRLTDRSVDLTTEGLDLAFFIGLP-EDSTLRIRKIADCQRILCAAPDYVARRGMP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S  +L  D+H  +      P   E    L T D P         + +    +  + + G
Sbjct: 179 RSGADLIADRHECLNL--RYPGATEFQWLLQTPDGPKRFAVSGRFECDDGDVLTDWALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA+ P + V ++     LV + +D       +   Y        K + F +F+  +
Sbjct: 237 QGIAMKPVFEVAEHLKAGRLVPVAQDTPPVPVQMACLYTHRRHQDPKARLFMDFVIDR 294


>gi|152969908|ref|YP_001335017.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238894441|ref|YP_002919175.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150954757|gb|ABR76787.1| putative transcriptional regulator, LysR family [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238546757|dbj|BAH63108.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 301

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++V+  V  + SF  AAE L   +S++SR +  LE  +G +L  R  R L++T 
Sbjct: 1   MDKLDAMQVYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     +  ++   +      S +P+G+ ++     L ++ +   + EFL  YPD
Sbjct: 61  EGRRYYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI  +  DC IR  +   S++L+ R L        A+P +L     P 
Sbjct: 121 LELILCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           SI EL +H  + +  L  +     +WL ++D      R+   L V+   + +Q  + G G
Sbjct: 181 SIDELHQHRAVGY--LNHRTGRTIDWLFSLDEGDCAIRMRETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+ +    +  LV  +E        +   YP+       ++AF ++
Sbjct: 239 LIRVASYLAQPYLQSGALVACLEQ-AASDLPLSLVYPQNRYLPPAVRAFYDW 289


>gi|54296319|ref|YP_122688.1| hypothetical protein lpp0348 [Legionella pneumophila str. Paris]
 gi|53750104|emb|CAH11496.1| hypothetical protein lpp0348 [Legionella pneumophila str. Paris]
          Length = 289

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  V     F  AA +  +S +++SRQI+ LE E+  +L  R  R L+LTE G+
Sbjct: 4   FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQITRLEAELKAELLVRTTRKLSLTEIGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   +   +L   +I +  S  +  G L + ++       L   L EF+ L P +QI
Sbjct: 64  RYYQQCKKTLLELNEAEIAIASSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123

Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  +  D++ +  D    + +  P     L+++++ T      A+P YL     P +
Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGP---PELVRKRVSTTRYVLCASPDYLAENGIPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL KH  IT     P  +  F      ++   +P    L +N   ++ +  +LG GI 
Sbjct: 181 PSELGKHRYITHSMRNPDNLVTF---KNNEQIYVKP---VLWLNDSRALCECALLGMGII 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L +YIV +   +  L+ ++ +    S +VY  Y  +     K++ F +F
Sbjct: 235 KLHEYIVAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284


>gi|254251907|ref|ZP_04945225.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124894516|gb|EAY68396.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 324

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 133/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  +       +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEARAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L  
Sbjct: 121 RYPEVKVHIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLNQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L K   +    +  + +  FN +A             L     ++I +  +
Sbjct: 181 NAPPLVPDDLAKFETLDTPSVDGRHV--FNLIAPDGTRHLHEHDPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|296105834|ref|YP_003617534.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy]
 gi|295647735|gb|ADG23582.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy]
          Length = 287

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  V     F  AA +  +S +++SRQI+ LE E+  +L  R  R L+LT+ G+
Sbjct: 4   FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   +   +L   +I +  S  +  G L + ++       L   L EF+ L P +QI
Sbjct: 64  RYYQQCKKTLLELNEAEIAIANSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123

Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  +  D++ +  D    + +  P     L+++++ T      A+P YL     P +
Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGP---PELVRKRVSTTRYVLCASPGYLAKNGIPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL KH  IT     P  +  F      ++   EP    L +N   ++ +  +LG GI 
Sbjct: 181 PSELGKHRYITHSMRNPDNLVTF---KDNEQIYVEP---VLWLNDSRALCECALLGMGII 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L +YIV +   +  L+ ++ +    S +VY  Y  +     K++ F +F
Sbjct: 235 KLHEYIVAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284


>gi|332531552|ref|ZP_08407449.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332038915|gb|EGI75344.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 355

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 137/342 (40%), Gaps = 55/342 (16%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  VA  GS T AA    ++ + + R++  LE  +G+KL  R  R L+LT 
Sbjct: 1   MDKLKQMESFVAVATRGSLTAAARAEGVAPAIMGRRLDALEERLGVKLLLRTTRRLSLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +   +   +  +    VK SG LR+      G+  +   +  F  L+ D
Sbjct: 61  EGSAFLEDCQRLLADIANAEAGVSAGGVKASGHLRVTAPAGFGRRHVAPLVPRFRELHTD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D++ +  DCA+R+   +  SSL+  +L        A P YLK    P 
Sbjct: 121 VTISLNLSDRVVDMAREGYDCAVRVGD-LPDSSLVSVRLADNRRLCVATPEYLKRHGTPQ 179

Query: 182 SIQELDKHNLITFGD----------LIPKCMEDFNWLATVDRPIGEPRISC--------- 222
           + Q+L + + +               +P+  +  +    +DRP GE  ++          
Sbjct: 180 TPQDLARFDCLVLSSEASQTRGWAFRVPRKAQGLHQEELLDRPEGETVLNADLTGTGLAG 239

Query: 223 -------------------------------LQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
                                          L  +    +  +C+ G GIA    + V++
Sbjct: 240 ADLAGAGLSDTPLVNGAQAEGELIYYRPQGPLDCSDGQVLHDWCLAGYGIAWRSTWEVEE 299

Query: 252 N---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     LV ++ED   P   +Y  +P+      +L+ + +F+
Sbjct: 300 DVSAGRLVPVLEDYAAPPNGIYVVFPQRKHLPLRLRLWLDFL 341


>gi|307257945|ref|ZP_07539698.1| Transcriptional regulator protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307262340|ref|ZP_07543987.1| Transcriptional regulator protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306863492|gb|EFM95422.1| Transcriptional regulator protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867956|gb|EFM99785.1| Transcriptional regulator protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 295

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 87/295 (29%), Positives = 133/295 (45%), Gaps = 11/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D +R+F  V ++  F +A+  +++  S++SR+IS LE  +G++L  R  R + LTE 
Sbjct: 2   ISLDDMRLFVEVVKANGFKNASNVMNVPTSTLSRRISLLEKAIGLRLLNRTTRKIELTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+        V  + E     L E S KPSG LR++TT D  +  L   L EF   YP+I
Sbjct: 62  GAIYFERCKRVVIEAELAHEALDEMSYKPSGLLRVSTTQDFAKIFLLPYLAEFAECYPEI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             Q  L ++ I++  +  D AIR+ + ++ S  I R L    +  YA+P YL   R    
Sbjct: 122 NCQFHLSDEKINLVGNPVDLAIRIGR-LEDSHYIARFLTQSQLRLYASPTYLARNRPIQI 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L + N + FG            L   DR +  P       N+   + Q    G GIA
Sbjct: 181 PENLAELNCLAFGSQQKWQ------LTQNDRMVEIPISGRFSANNIGFLCQLASDGLGIA 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLPD + K    N  L  ++ D       +Y    E      K + F +F+  K 
Sbjct: 235 LLPDVVAKNAVQNGLLTEVLPDWQGGEHLIYALT-ETKLIPAKTQVFIDFLKEKL 288


>gi|283835609|ref|ZP_06355350.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291068821|gb|EFE06930.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 296

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 131/300 (43%), Gaps = 8/300 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  SGSFT AA +L +S   + + I+ LE ++G +L  R+ R  +LT+
Sbjct: 1   MDKLRGMETFIAVVESGSFTSAATRLEMSAVMVGKYITQLEAQLGTRLLERNTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  ++   +  ++   + P+G LRI+     G  ++      FL  +P+
Sbjct: 61  AGRVYFEEARRVLEQVSIAERSVERLRLAPAGTLRISAPTSFGACVISPLAATFLQAWPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L L N+ +D+  +  D AIR+   I  + ++ + L    M   A+P YL     P 
Sbjct: 121 VRIELDLTNRMVDLVNEGVDLAIRIGD-IHQTDVVAKYLCPYRMAICASPDYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  ++      +       L      +   R + L+ N    +    V G+G+
Sbjct: 180 TPADLVDHLCLSHTVWTARNEW---MLPGAAGEVRWKRDAILRCNDGHGLRMAAVAGAGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            L P+ ++ +      LVR++E        ++  + + L+   KL  F   +    ++ +
Sbjct: 237 LLQPEVLLAEELATGRLVRVLEAFTPQPRPIHLLWRQDLRALPKLTRFVGHVLSAVQELR 296


>gi|256022537|ref|ZP_05436402.1| putative transcriptional regulator LYSR-type [Escherichia sp.
           4_1_40B]
 gi|301025372|ref|ZP_07188928.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|307138459|ref|ZP_07497815.1| LysR family transcriptional regulator [Escherichia coli H736]
 gi|331642408|ref|ZP_08343543.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
 gi|299880107|gb|EFI88318.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|323940535|gb|EGB36726.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|331039206|gb|EGI11426.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
          Length = 314

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 135/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 14  LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 74  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 134 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   + P        L  N    + Q+C+ G GIAL 
Sbjct: 193 DLSALPCLVIKERDHPFGVW--QLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 250

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 251 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298


>gi|221067424|ref|ZP_03543529.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220712447|gb|EED67815.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 314

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 135/297 (45%), Gaps = 12/297 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR+++ LE  +G++L  R  R L+LT+ G
Sbjct: 3   DLNDMLYFVEVVERGGFAAAGRALGIPKSRLSRRVAELEAHLGVRLLQRTTRKLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +          + E   +P G +R+   + L Q +L   + EFL   P +Q
Sbjct: 63  ETFLRHGQAMRDAALAASDAVAEVQTEPRGTIRVTCPVTLAQTVLGELMPEFLKRCPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +++  +  D A+R+R  ++ S S++ ++L +      A+P  L+    P +
Sbjct: 123 VEMQVTNRPVNLVEEGVDVALRVRATLEDSGSMVVKRLDSSRQILVASPDLLQRQGTPRT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGS 239
           +++L          +    ++  + L  V     E R+       V+  L++    + GS
Sbjct: 183 LEDLQ-----LLDSMAMTAVDGHSSLLLVGPEGKEHRLQLQPRYVVDDLLTLKFAALAGS 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+  LPDY+ +D      LV+++     P   V+  +P        ++ F +F+  +
Sbjct: 238 GMCWLPDYMCQDALNQGTLVQLLPQWAPPRGIVHAVFPSRRGLAPAVRHFLDFLGER 294


>gi|52840529|ref|YP_094328.1| LysR family transcriptional regulator [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52627640|gb|AAU26381.1| transcriptional regulator, LysR family [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 287

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  V     F  AA +  +S +++SRQI+ LE E+  +L  R  R L+LT+ G+
Sbjct: 4   FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   +   +L   +I +  S  +  G L + ++       L   L EF+ L P +QI
Sbjct: 64  RYYQQCKKTLLELNEAEIAIANSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123

Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  +  D++ +  D    + +  P     L+++++ T      A+P YL     P +
Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGP---PELVRKRVSTTRYVLCASPDYLAKNGIPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL KH  IT     P  +  F      ++   EP    L +N   ++ +  +LG GI 
Sbjct: 181 PSELGKHRYITHSMRNPDNLVTF---KDNEQIYVEP---VLWLNDSRALCECALLGMGII 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L +YIV +   +  L+ ++ +    S +VY  Y  +     K++ F +F
Sbjct: 235 KLHEYIVTEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284


>gi|94313468|ref|YP_586677.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93357320|gb|ABF11408.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 304

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 137/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  +    SFT AA+ L L +SS++  +  LE+ +G++L  R  R ++ T 
Sbjct: 1   MDRIDAMRVFTRIVERRSFTAAAKDLDLPRSSVTDAVKQLESRLGVRLLQRTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +    +    E  +         P G LR+     L +  L   L  FL  +P 
Sbjct: 61  DGEAYFQRCLRLLADFEEAEAAFAG--TSPKGVLRVDVQGQLARRFLFPALPAFLAQHPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +Q+   ++ +D+  +  DC +R+ +P Q S ++ R++  +     AAP YL     P+
Sbjct: 119 ITLQISEGDRLVDLVREGIDCVLRVGEP-QDSEMVARRVARLAQLTLAAPPYLARHGSPV 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI+ L  H ++ F   +   +       T          + + V+   S++  C LG G+
Sbjct: 178 SIESLGNHRMVGFRSTLTGGLLPLE-FMTGGVRSEVMLPAPVSVSGAESLVAACRLGLGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +P Y V+++     LV ++ ++  P+ +V   YP + + + +++ F +++  +
Sbjct: 237 IQVPRYHVEEDLLRGTLVSVLSEIPPPTMSVSLLYPRSRQLSQRVRVFLDWVSAE 291


>gi|325525033|gb|EGD02942.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 315

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 78/303 (25%), Positives = 129/303 (42%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFTRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD
Sbjct: 61  AGESYLRRCRQILADVDRAEEEASCAHERPAGVLRLHSFASVGHHYVLPALTRYHAQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P 
Sbjct: 121 VSIELSLSQRMPDLFDGTSDTAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +T         E    L   D          +Q N+  S+      G GI
Sbjct: 181 HPQDLGAHACLTLCTPAFPTHEWV--LEGPDGVEQIRVAGPVQTNTAESLALAIRDGIGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----- 293
            +LP Y   D   + +LVR++ + I     VY  YP       K++ +   +  +     
Sbjct: 239 GMLPLYSAIDALRDGSLVRVLPEHILQKMNVYALYPSRRFIDAKVRTWVELLRAQVPAMI 298

Query: 294 ARD 296
           ARD
Sbjct: 299 ARD 301


>gi|293606615|ref|ZP_06688971.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292815000|gb|EFF74125.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 300

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 125/297 (42%), Gaps = 7/297 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ LR+F   A  GSF+ AA +L +S +  S  +  LE  +  +LF R  R L LT  G 
Sbjct: 4   FEDLRIFVASADHGSFSVAARELDVSPAVASAALKRLEQILDARLFVRSTRSLRLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L+  +  L       SG L ++   DLG+++L   L +F   +P +  
Sbjct: 64  RYLEYARSAIATLDAGKNALARDKTAISGTLSVSIPSDLGRHVLLPWLDDFQHQHPSVNF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           Q+ + ++  D+     D AIR  KP   S+L+   L         A+P YL     P   
Sbjct: 124 QVRISDRLADLYRQPVDIAIRYGKPG-DSALVALPLAEHNRRVVCASPAYLARHGVPQKP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  HN ++F  ++ + + D          +  P       +    + ++ + G GIA 
Sbjct: 183 EDLRAHNCLSF--VLGETLHDRWAFERDGTAMTVPVKGDRVGDDGDLVRRWALAGKGIAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              Y V  +    +LV ++ D  T    +Y      +  +  +K  R F+  + R +
Sbjct: 241 KSRYDVLRDLRGGSLVALLPDYATEPSPLYLLCVHRMLLSPAVKRMREFLQERFRQF 297


>gi|218515811|ref|ZP_03512651.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 301

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 137/298 (45%), Gaps = 7/298 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + +F  V  +GSF    + + LS+S+  + +  LE  +G +L  R  R L+LT++G
Sbjct: 5   NLNDILIFMAVVDAGSFIAGGQAMGLSRSAAGKAVIRLEDRLGTRLLNRTTRRLSLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    EV   ++  +  +   S  P G LR+      G+ ++   ++++LL +PDIQ
Sbjct: 65  RLFYEHGLEVLASVDEAEASVAGQSGAPRGVLRLTVPDAFGRLVVLPIVEKYLLAWPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS--SLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++   ++  DI  +  D AIR+     +S   L+ R +        A+P YL +  EP 
Sbjct: 125 VEVNFTDRKADIVEEGFDLAIRIGAMPSASENGLLSRVIAADRARLCASPFYLADRGEPC 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L  H+ + F        + + +       +     S L+++S  +I    V G GI
Sbjct: 185 HIDDLAAHDCLVFSS--RDQRQGWRFRGNDGAWVKAQGRSRLRLDSSEAIRDAAVAGLGI 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ALLP ++   +     L  ++ ++      +   YP+      +++ F + +  + R+
Sbjct: 243 ALLPGFLAAGDLAAGRLRHVLPELEIDEAKIVALYPDKRLLEPRVRRFIDLLVEELRN 300


>gi|172060739|ref|YP_001808391.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993256|gb|ACB64175.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 313

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 122/299 (40%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 12  PLDLLDVGLFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 72  DGEVFMARAEALLSAADAARASVGHGRSEPYGRLKVSMSSSFGRQHVAPVIPSFLRRYPS 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  D  D AIRL   ++ S+L+ RKL         +P YL     P 
Sbjct: 132 VSLDLRLSDEIVDLVDDGYDVAIRLGA-LKDSTLVARKLAANRRVLCCSPAYLAEHGTPR 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL +H  +  GD             T   P+       L  ++  +I +  V G GI
Sbjct: 191 HPAELAQHECVILGDQRDWS------FVTPQGPLTVRVGGRLVASNGEAIREALVDGFGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     +  LV +++D        ++  YP       K  A   F+     D
Sbjct: 245 AIKSTWDVGPLLADGTLVTVLDDYPFAHDVAIWAVYPSRAHVPLKTLALIAFLAEHFGD 303


>gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
 gi|133737512|emb|CAL60555.1| putative Bacterial regulatory protein, LysR [Herminiimonas
           arsenicoxydans]
          Length = 301

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 122/292 (41%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F +     SF  AA  L ++   + R+I  LE  +G++L +R  R L LTE
Sbjct: 1   MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS       ++  +L+  +  L     K SG L I+     G+  +    + FL  +P 
Sbjct: 61  EGSVYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++   L ++ +D+  +  D  IR+   I   + +  KL          P Y K   +P 
Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGTI-DPNFVAIKLAANKRVVCGTPDYFKKHGKPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L KHN + F     +    +       + +       L  N    + ++   G GI
Sbjct: 180 TLDDLAKHNCLAFNLQGGQQRGWY--FNHRGKTVSVRAQGSLDCNDGELLHRWMSEGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A    + ++   ++  L  +++D   P + +   YP+      K++ F + +
Sbjct: 238 AWRSVWEIQSQLESGTLETVLDDFAIPEYDIMAVYPQQRNVPAKVRLFISHL 289


>gi|206560214|ref|YP_002230978.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198036255|emb|CAR52151.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 312

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 125/299 (41%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + + A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 12  PLDLLDVALFVRAALLSNVSAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 72  DGEVFMARADALLAAADAARASVGRGRSEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPS 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  D  D AIRL   ++ S+L+ RKL T       +P YL     P 
Sbjct: 132 VSLDLRLSDEIVDLVDDGYDVAIRLGA-LKDSTLVARKLATNRRVLCCSPAYLAERGTPR 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +  GD            AT   P+       L  ++  +I +  V G GI
Sbjct: 191 HPADLTQHECVILGDQRDWS------FATPQGPLTVRVGGRLVASNGEAIREALVDGFGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     +  LV +++D        ++  YP       K  AF  F+     D
Sbjct: 245 AIKSTWDVGPLLASGALVSVLDDYPFAEDVAIWAVYPSRAHVPLKTLAFIAFLAEHFGD 303


>gi|87118326|ref|ZP_01074225.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86165960|gb|EAQ67226.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 300

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 125/296 (42%), Gaps = 12/296 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  V   GS   AA+ L LS++ +S  +  LE ++G+KL  R  R +
Sbjct: 1   MDVSFEQLKSMVVFAQVVEQGSLVGAAKHLSLSRAVVSYHLKKLEQQLGVKLLNRSTRSI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT++G   ++    +  +       ++    +P G L+I   +++G  L+   L  F  
Sbjct: 61  GLTQEGEVYYQRCRVIAQQAHEANQAIENLKDEPEGLLKITCPVNVGLQLIVPALNGFRD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP I++ L+L +  ++I     D AIR    +  S L   KL ++     AAP YL   
Sbjct: 121 LYPKIELDLMLSDDVVNIMKQGIDLAIR-GAELTDSGLQASKLASLQNCLCAAPSYLNKQ 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P +  +L +H+ + +             L   +R         +  N+  +   +   
Sbjct: 180 GRPNTPDDLVQHDWVVYKLAANSVS-----LTKGNRFFDIKVSGSISTNNAAARTAFIEA 234

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  +P Y          L R++         +Y  +P     T KL+   +++
Sbjct: 235 GQGIGRVPLYDAGPKIKAGKLERVLASYKLSDIELYAVFPPGTGETKKLRLLLDYL 290


>gi|209516663|ref|ZP_03265516.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209502938|gb|EEA02941.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 296

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 133/298 (44%), Gaps = 12/298 (4%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +  + + +F  V ++  F  AA+   +  S++SR+IS LE  +G++L +R  R + L
Sbjct: 5   MGMELLNDMALFVEVVKAKGFRSAADATGVPNSTLSRRISELERSIGLRLLHRTTRKIEL 64

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G         +  +      +L +   +PSG LR +  +D     L   + EF  LY
Sbjct: 65  TEAGQIYFERCKRIVDEARLAHEQLGDMLAQPSGVLRASLPVDFAVTYLAPLIAEFAALY 124

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I     L  + +D+  +  D AIR+ +  ++S LI R + T+  H YA+P YL+   E
Sbjct: 125 PGIGFDFDLTPRRVDLVSEPFDVAIRIGES-ENSQLIARTIATLTPHLYASPDYLERSGE 183

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L++H+   FG L        N   T    +G        +NS     +   LG 
Sbjct: 184 PGKPADLEQHDC--FGILKAGAWTLLNGTRTETVSVG----GRFTLNSVGMARRLATLGM 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI L+P+ IV D   +  L RIM +       VY    E      K + F  F+  + 
Sbjct: 238 GIVLVPEEIVADELVSGRLRRIMPEWHGTPQPVYAMT-ETRLLPAKTQRFIEFLRKRL 294


>gi|330818048|ref|YP_004361753.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327370441|gb|AEA61797.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 334

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 132/299 (44%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+F  VA + SFT AA  L+ +   +SR I+ LE  +  +L  R  R L LT
Sbjct: 1   MQNKLQNMRIFVCVANANSFTAAARLLNTTIPQVSRAIAALEAHLHTRLLNRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +   L+  + E ++++V PSG LR+   + LGQ+ L     ++   YP
Sbjct: 61  EAGERYLHRCRSILGYLDEAEAEARDANVNPSGCLRVHCAVSLGQHYLVPAFAKYRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           D+ + + L  +   +  +  D ++ +    + SS LI  +L        A+  YL     
Sbjct: 121 DVLLDMTLSQRAPALVDEGFDVSVVVGDDELPSSGLIGVRLGETFGVLCASRDYLDRHGS 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLG 238
           P  I ++ +H  + +    P   E    L   D P    R  S  +VNS+ ++      G
Sbjct: 181 PRRIADMARHACVAYEAPAPGRSEWD--LVGPDGPEHVARAASSFRVNSHEAMAVAIREG 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GI +LP +       + + VR+M    +PS  ++  Y        K++ + +F+  + 
Sbjct: 239 MGIGVLPVHAAIGGLLSGDFVRVMPQCRSPSGVIWALYSSRQYVDAKIRTWLDFLREEL 297


>gi|320084383|emb|CBY94176.1| Uncharacterized HTH-type transcriptional regulator ycaN [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 313

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 15  LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 75  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLSIQEL 186
           +++  +D+  +  D  IR    +Q    +   L  +      A+P YL     PL  QEL
Sbjct: 135 VNDGFVDLINERFDAGIRFGDAVQLDMNVV-PLGDVLRPAIVASPAYLARFGTPLHPQEL 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +         +  + ++    R    P  + L VN     +     G+G+  + +
Sbjct: 194 INHRCLCHRFTRESGLYRWEFVRGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFE 252

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 253 QDVHEDLQDGQLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 303


>gi|226945165|ref|YP_002800238.1| transcriptional regulator LysR family protein [Azotobacter
           vinelandii DJ]
 gi|226720092|gb|ACO79263.1| Transcriptional regulator LysR family protein [Azotobacter
           vinelandii DJ]
          Length = 309

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 129/299 (43%), Gaps = 4/299 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   A SGSF+ AA QL L+ +++SR ++ LE  +G +LF+R  R LTLTE G
Sbjct: 3   TLANLESFVRSAESGSFSAAARQLGLTPAAVSRNVALLEKNLGTRLFHRSTRKLTLTESG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +           L+    E+     +P+G L+++  +  G   L   L +FL  YP ++
Sbjct: 63  ERFLLGVRGHLDGLQAAISEVASDRGEPAGVLKVSVALAFGMEYLLPLLPDFLQRYPHVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I    DN+ +D+  +  D AI     + +  ++ R L   H+ A A+P Y+K  R P S 
Sbjct: 123 IDWQFDNRQVDLIAEGFDAAIGGGFEL-AQGMVARTLAPAHIIAVASPTYMKGRRNPFSP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL + + I         +  +                    N   ++ +  VLG G+ +
Sbjct: 182 EELAELDGIVMRPARTGRIRQWTLRNASGAVQAAELRQSFVFNDPAAMTRAAVLGLGVTM 241

Query: 244 --LPDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +PD +   D   LVR++      +  +   Y        K + F +++    R  + 
Sbjct: 242 TAVPDALPYLDRGELVRLVPQWYADAGPISLYYASRTLLPAKTRVFVDYVLETFRTRRL 300


>gi|260554158|ref|ZP_05826417.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260404700|gb|EEW98211.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 301

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 1   MS-FDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           MS FD +   +L +F  V   GSF+  A    ++ S++S+ IS LE  +GI+L  R  R 
Sbjct: 1   MSYFDINRSGELAIFIRVVELGSFSAVARACDMTPSAVSKLISRLEKRLGIRLLNRSTRQ 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
             LT +G + +    ++ + L+  +  +     KP G++RI T+     + L   +  F 
Sbjct: 61  FQLTSEGCQFYEQGLQILNNLDELEQSVTA-HHKPQGRIRIHTSFSYWTHFLLPCISLFN 119

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP+I+++  L ++ I++     D AIR   P++SS+L+ R L + H +   +P Y++ 
Sbjct: 120 QRYPEIELEAHLSDEVINLVEQRIDVAIRTG-PLKSSNLVARSLGSTHKYYVCSPTYIEK 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYC 235
              P    EL  H L+     +    ++  WL     + I       L+VN   +I+Q  
Sbjct: 179 YGCPKHPDELHAHRLL----DVSYQRQNKTWLFKKATQEINLTPSRVLKVNQGEAILQLA 234

Query: 236 VLGSGIALLPDY---IVKDNPNLVRIMEDVITPS-FTVYFCYP-EALKNTGKLKAFRNFI 290
           V G GIA L ++          L++I+ED    +    +  +         +++AF +F+
Sbjct: 235 VSGVGIAQLNEFQIQKAIQQKQLIKILEDWNIHACEEFHAVWIGHDKYVPNRVRAFLDFL 294

Query: 291 FLKA 294
              A
Sbjct: 295 VEHA 298


>gi|73541313|ref|YP_295833.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72118726|gb|AAZ60989.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 303

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ AAE L + +++++  I  LE  +G++L  R  R + +T 
Sbjct: 1   MDRFQEMQVFVRIADRRSFSLAAEDLQIPRATVTNLIKRLEQRLGVRLLERTTRQVRMTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +   +++   P G LR+     L ++ +   L EFL  YPD
Sbjct: 61  DGEAYYHRCLRLLTDLEEAENSFRDA--PPKGLLRVNLQGTLARHFVMPALGEFLAQYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + +  D++ +D+  +  DC +R    +Q SSLI R++  +     A+P YL+    P 
Sbjct: 119 ITLHVGEDDRLVDLVREGVDCVLRAG-VLQDSSLIGRQIALLEQVTVASPAYLERHGVPN 177

Query: 182 SIQELDKH---NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           ++ +L  H   N ++     P  ++ +    TVD  +     S + V          + G
Sbjct: 178 TLDDLKHHYAVNYVSSATGRPSALDFYVGEETVDLQL----TSKISVTGADLYTGAAISG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+  +P Y ++    +  L  ++ D   P   V   YP+  + + +++ F  ++  +
Sbjct: 234 LGLVQVPRYRIEKELADGRLRIVLPDSPPPRMPVSVLYPQNRQLSARVRVFSQWLATR 291


>gi|260549462|ref|ZP_05823681.1| LysR family transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407571|gb|EEX01045.1| LysR family transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 311

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 131/293 (44%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   A  GSF+ AA  L L+ +++SR ++ LE  +G++LF+R  R LTLTE G
Sbjct: 3   TLSNLESFIRSAEHGSFSAAARHLALTPAAVSRNVAQLEQNLGVRLFHRSTRNLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +  + ++TT  E    S  P G L+I+ +   G   +   + +F+  YPDI+
Sbjct: 63  EHFFTSIRDNLNNIQTTISEFNTDSSHPKGTLKISLSAGFGVEYILPLMPDFMNKYPDIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  L NK +++  D  D AI     +    +I+R L  +HM   A+P++LKN   P   
Sbjct: 123 LEWHLSNKQVNLITDNFDAAIGSGFKL-GQGIIKRSLSPLHMIIVASPNFLKNKILPSHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++   + I         + ++ ++              L  +   ++ Q  VLG GIA 
Sbjct: 182 EDISNWDGIIMRSPQTGKLHEYKFIGPDQGEAYLNLNEKLIADDPSALHQGAVLGMGIAA 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     K   +N  L+RI+ +           +        K + F +FI  K
Sbjct: 242 ISTAHAKSYIENGTLIRILPEWYADLGETNLYFSSKKHMPAKTRCFIDFIVSK 294


>gi|227112604|ref|ZP_03826260.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 305

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 130/295 (44%), Gaps = 6/295 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D    +RVF  +   GSF+ AAE+L L ++++S  I  LE  +G++L  R  R + +T
Sbjct: 4   AMDHIQAMRVFVRIVELGSFSRAAERLTLPRATVSNTIKQLEARLGVRLLQRTTRQVQIT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +    ++  ++E       +   +P GK+R+     L + ++   L EF   YP
Sbjct: 64  DEGRVYYERCLQLLAEIEEIDTLFTQQKQQPVGKVRVDMPHSLAREIVVPALGEFYARYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L  ++  I++  +  DC +R  +     +L  R L ++     A+  YL     P
Sbjct: 124 QVTLMLSANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQITCASADYLARFGVP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H ++ +  L  +         + D  I       LQVN   + +     G G
Sbjct: 183 RSLDDLSGHQMVGYFSLRTEHRYPLE-FMSGDECITRMLPGALQVNGTDAYIASARAGLG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I   P   ++   ++  LV I+ ++  P+  +Y  Y        +++ F  ++  
Sbjct: 242 IIQAPRRGLRPFLESGELVEILPEMPPPAMPLYVMYAPGRFLAPRIRVFIEWLDE 296


>gi|148977682|ref|ZP_01814243.1| AphB/LysR family protein [Vibrionales bacterium SWAT-3]
 gi|145963050|gb|EDK28319.1| AphB/LysR family protein [Vibrionales bacterium SWAT-3]
          Length = 291

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 142/293 (48%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +     S +  +L +T  EL +     SGK+RI    +L + ++     +F+  YPDI
Sbjct: 61  GERFFNECSPLLQRLSSTAEELTDVCKGASGKIRITAPSNLTKRMMMPMFSDFMTQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+++N+   +     D   R+  P + SSLI RK+  +     A+P YL     P  
Sbjct: 121 NIELMMNNQADQLDPTEWDVIFRVG-PQRDSSLIARKISEVKDILIASPEYLAKNAAPSH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H+L+    LI   + + N     D  +          N+   + Q C  G GI 
Sbjct: 180 AEELANHSLLKGYPLIKWQLSNSN-----DETVVNSEKGRFNANALNVVRQACSEGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD +++   ++ +LV+++ED       +Y  Y        K++ F +F+  
Sbjct: 235 LMPDVMIREYIEDGSLVQVLEDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 287


>gi|170720368|ref|YP_001748056.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758371|gb|ACA71687.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 298

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 127/297 (42%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V    SF  AA +L +S ++++R +S LE  +G+KL  R  R + LT+
Sbjct: 1   MDQIHLMKVFVAVGELESFAAAARRLDISPAAVTRAVSALEDMLGVKLLLRTTRSVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +    T  +   +          +  P G+L +   I  G+  +  ++  +L  YP+
Sbjct: 61  AGGRYLEDTRHILASIFEANEAAAGINATPKGELAVTAPILFGKKFVMPSIVRYLQQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +     ++ +++  +  D A+R+  P+  S L   ++  +     A+P YL     P 
Sbjct: 121 VDVSAYFLDRIVNLVEEGMDVAVRIG-PLPDSGLKALRVGRVRRMLCASPEYLARQGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H +I   +L P+    F      D P        L V S    +   + G GI
Sbjct: 180 HPSDLPAHAVIATTNLSPRAGWRFG---VTDEPTMVRIKPRLTVTSNDGAIAAALGGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L  Y V D   +  L  I+ D     + ++  + E+   + K++ F + +  + R
Sbjct: 237 ARLLSYQVVDEIASGQLQVILADYEEAPWPIHVLHRESKHGSAKVRMFVDMLAHELR 293


>gi|107103412|ref|ZP_01367330.1| hypothetical protein PaerPA_01004482 [Pseudomonas aeruginosa PACS2]
          Length = 317

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 136/298 (45%), Gaps = 13/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +GSFT A++QL+ + + +SR ++ LET +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+GKL++ +   +GQ+ +   +  +   Y D
Sbjct: 61  AGQRYLLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + N+  D+  +  D AI +   +  S  I +++   +    A+P YL+    P 
Sbjct: 121 VTFDLTMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPS 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVL 237
              EL  H+ +    L+   +    WL   D P G+  +S      QVN   ++ +    
Sbjct: 181 EPSELASHDCL---RLVSPVVPLDRWLF--DGPNGQEMVSIGASPFQVNVGDAMTEAIRS 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI +LP Y   ++     LVR++         V+  YP       K+K +  ++  
Sbjct: 236 GLGIGILPVYSAIEDLGKGTLVRVLPQHRLQQLNVFALYPSRQYLDAKIKTWVEYLKE 293


>gi|254713362|ref|ZP_05175173.1| transcriptional regulatory protein [Brucella ceti M644/93/1]
 gi|254716283|ref|ZP_05178094.1| transcriptional regulatory protein [Brucella ceti M13/05/1]
 gi|261218062|ref|ZP_05932343.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261321090|ref|ZP_05960287.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|260923151|gb|EEX89719.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293780|gb|EEX97276.1| transcriptional regulator [Brucella ceti M644/93/1]
          Length = 297

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G
Sbjct: 5   NLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI 
Sbjct: 65  ERLLAQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D    D+  +  D  +R  K +    +  R    I +   A P +L+   +P   
Sbjct: 125 IELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPVATVATPAFLEKGGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   E F W  +   + I       L   S   ++Q C+ G G+A
Sbjct: 185 QDLSDHDCINL--RLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP        ++  LV ++ D        +  YP   ++   L A    +
Sbjct: 243 YLPRDYAARHIESGALVEVLADWRKTFAGYHLYYPNRRQHPPALAALIEAL 293


>gi|206580446|ref|YP_002236343.1| transcriptional activator AaeR [Klebsiella pneumoniae 342]
 gi|288933330|ref|YP_003437389.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290511620|ref|ZP_06550989.1| DNA-binding transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206569504|gb|ACI11280.1| transcriptional activator AaeR [Klebsiella pneumoniae 342]
 gi|288888059|gb|ADC56377.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289776613|gb|EFD84612.1| DNA-binding transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 309

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R L LTE G 
Sbjct: 4   LKRMSVFAKVVELGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSLGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  + +    +L   +  P G LRI  +  + QN+L     E L  YP + +
Sbjct: 64  IYYQGCRRMLFEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLARITAEMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGSMPMVLCAAKSYLAQAGNPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++++++   G GIA +
Sbjct: 183 DLASHSWLEYSV---RPDNEFEIIAPEGISTRLIPQGRFVTNDPMTLIRWLTAGVGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  + +++     L  ++    +    VY  Y E  K   K++   N++  
Sbjct: 240 PLMWAIEEINRGELEILLPSYQSDPRPVYALYTEKDKLPLKVQVCINYLTE 290


>gi|62178706|ref|YP_215123.1| lysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|205351478|ref|YP_002225279.1| lysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855652|ref|YP_002242303.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224581982|ref|YP_002635780.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62126339|gb|AAX64042.1| putative lysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|205271259|emb|CAR36047.1| putative lysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|206707455|emb|CAR31729.1| putative lysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224466509|gb|ACN44339.1| putative LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322713159|gb|EFZ04730.1| lysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|326626505|gb|EGE32848.1| lysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 313

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 15  LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 75  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 135 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 195 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 253

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 254 DVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 303


>gi|330876786|gb|EGH10935.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 266

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 129/268 (48%), Gaps = 8/268 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGSFT A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRIFCQVMESGSFTAASDKLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++E  +  +   + +P G LR++  +      L   L  FL  Y D+ +
Sbjct: 64  SYYESALRLLAEIEQVEQGITGQNSEPRGTLRLSAPLSFAVAHLGCLLPLFLQRYRDVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL     P   +
Sbjct: 124 EVDLSDRAVDLISEGYDLVLRIG-VLEDSSLIARRIASIDRVYCASPAYLAERGTPQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +G                 +P+       ++ N+   +    V G GI  L
Sbjct: 183 DLHAHDCLPYGHSRQAQWR----FQVQGKPLILNISGRMRANNGELLRDTAVAGLGITYL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTV 269
           P +IV     + +LVR+++D+     T+
Sbjct: 239 PTFIVGAALRDGSLVRVLDDLRPEPLTL 266


>gi|330809407|ref|YP_004353869.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377515|gb|AEA68865.1| putative transcriptional regulator, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/282 (26%), Positives = 120/282 (42%), Gaps = 4/282 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR GSFT AA  L ++QS++S+ I+GLE  + I+L  R  R ++ T  G
Sbjct: 9   NLNDLLSFVTVAREGSFTRAAGALGVTQSALSQAINGLEARLQIRLLTRTTRSVSPTVAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +     + ++E     L E   KP+G +RI     + +  L   L E L  YPD+ 
Sbjct: 69  ERLLQAIGNRFDEIEAELDMLTEMRDKPAGTVRITCGDHVLRTTLLPKLTELLHDYPDVN 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  +     DI  D  D  +RL   I    +       + M   A+  Y      P + 
Sbjct: 129 VEFDVCYGFRDIVADRFDAGVRLGDTIDKDMVAVPIGPPLRMAVVASQAYFAAHAIPKAP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I         +  ++      + +       L  N+   I+Q  V G G+A 
Sbjct: 189 RDLMSHRCINQRMQTSGGLYVWD-FERRGKQVNVRVDGQLIFNTSTHIVQAAVAGLGVAY 247

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           LP+   +       LVR++ED   P    Y  YP   + +  
Sbjct: 248 LPEEEFEPYLQEGRLVRVLEDWCPPFSGYYLYYPSRRQPSPA 289


>gi|325525291|gb|EGD03144.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 323

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 128/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGK+RI     LG++ +  ++  +    P
Sbjct: 60  ESGERYFERARSILAEIDYANAEARNALLRPSGKMRIHAMTGLGKSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  +          E     +  +  + E + +  QVN   ++      G G
Sbjct: 180 QTPDDLPNHVCLRLDTPASPASEWRLERSDGEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F + +
Sbjct: 240 IACIALYTVLDDLREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|330975295|gb|EGH75361.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 309

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 132/290 (45%), Gaps = 4/290 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF +VA  GSFT AAE+L+L+ S+IS+ I+ LE  +  +LF R  R L+LTE G 
Sbjct: 7   LKGIDVFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  + V   LE  +I L  +  +P GK+RI      G+  +   + +F+  +P +Q 
Sbjct: 67  TFYRTCTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPLSI 183
            +   ++ +D   +  D  +R+       + +  +   T  +   A+P Y+    +P ++
Sbjct: 127 HVSFSDRYVDPVHEGIDIVVRIGGSDAWPAAMAHQFFGTQKLIFCASPEYVNRYGQPKTV 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +LD H  I +G      +  +                 + V      +   + G GIA 
Sbjct: 187 SDLDDHQCIGYGQNDGMAIPWYFKGRQPGDMERRIMHPHIAVGDGEGEVMAVLAGLGIAQ 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++V+   ++  LV ++ D+ T    +   +  + +   K+ A   ++
Sbjct: 247 LPTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAYL 296


>gi|241113206|ref|YP_002973041.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861414|gb|ACS59080.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 298

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 88/292 (30%), Positives = 135/292 (46%), Gaps = 7/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + V   V +SGSF  AAE + LS S +SR IS LE  +G++L  R  R + LT+ G+
Sbjct: 7   LNGVSVLAAVIQSGSFARAAESMGLSASGVSRAISRLEGRIGLRLLDRTTRTMRLTDDGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +   + +   +E        +     G+LR+       + +L   L  FL  YPDIQI
Sbjct: 67  RFYEQVAPLLSGIEEAAQTAVGARQAVRGRLRVNVDPYFSRLVLGPRLGAFLDRYPDIQI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I  N+  D+  D  D A+R  +P Q S LI R L+   +   AAP Y++    P   Q
Sbjct: 127 EIITRNEIGDLVADGMDVAVRFGEPAQRS-LISRLLMQTRVITIAAPAYIERFGRPSRPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I F D  P     F W L   +  +     S + VN   + +  C+ G GIA 
Sbjct: 186 DLSEHTCIQFQD--PLTARPFEWELRWGEEVVSIETRSRILVNDAGTTLATCLAGIGIAQ 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +    + D   N  LV +  D    +F +Y  YP       K++A  +F   
Sbjct: 244 VFSLGMADYLSNGQLVNLFPDWSDETFPLYAFYPSRQHIPAKVRALIDFCVE 295


>gi|116696448|ref|YP_842024.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530947|emb|CAJ97294.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 301

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 134/293 (45%), Gaps = 13/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               ++VF      GS +  A +   +Q +IS+ ++ LE E+G++L  R    L+ TE G
Sbjct: 3   TIRAMQVFVRAVELGSLSAVAREQQSTQPTISKVVAALEKEMGVRLLERSTTSLSPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + H     V  +      + +  S +P+G++R++     G   L   +  F   YP+++
Sbjct: 63  RRFHERARRVLDEYGEAVSDARGMSGQPAGRVRVSAPASFGVLRLNALVLAFQQRYPEVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ D++ +D+  +  D A+RL   +   +++ R++        A+P YL         
Sbjct: 123 VELLFDDRFVDLVEEGVDIAVRLGASLP-PNVVARRIAVSPRLLVASPDYLARHARIRQP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSG 240
            +L +H ++ F  L             +D P G+  +S     +VN+ L++ +  + G+G
Sbjct: 182 ADLARHQILRFTWLAAGD------EIVLDGPGGQAPVSASCRYRVNNSLAMRESFLAGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + P ++V+   D+  L R++     P+   +  YP       +++   +++
Sbjct: 236 FGMTPAWLVQDLLDSGALQRVLPRWSGPAQEAFLVYPSRRYQPERVRLLLDYL 288


>gi|91790325|ref|YP_551277.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699550|gb|ABE46379.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 307

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +L  F  V   GS T AA+   ++ + + R++  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDKLKQLESFVAVVARGSLTAAAKAEGVAPAIMGRRLDALEERLGVKLLVRTTRRITLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +   L   +  +    VK SG LRI      G+  +   + +F   + D
Sbjct: 61  EGSAFLEDCQRLLADLANAEASVSAGGVKASGHLRITAPAGFGRRHVAPLVTKFREQHLD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P 
Sbjct: 121 VTISLNLSDRVVDLAGEGFDCAVRVGD-LPDSSLVSVRMADNRRLCVATPRYLQRHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              EL + + +T         +   W   V+  +   +    L  +    +  +C+   G
Sbjct: 180 HPAELARFDCLTLSS---DASQTRGWAFQVNGELIHLKPGGPLDCSDGQVLHDWCLADYG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA    + V+    + +LV ++E    P   +Y  +P+      +++ + +F+
Sbjct: 237 IAWRSTWEVESEIASGHLVAVLEAFAAPPNGIYAVFPQRKHLPLRVRLWIDFL 289


>gi|269962155|ref|ZP_06176509.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
 gi|269833239|gb|EEZ87344.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
          Length = 291

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +   S +  +L +T  E+ +     SGK++I+   +L + ++      F+  YPDI
Sbjct: 61  GERFYHECSPLLQRLTSTAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNSFMKQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L  ++    +     D   R+  P + SSLI RK+  +     A+P YL     P  
Sbjct: 121 NIELTTESNADQLDPTEWDVIFRVG-PQRDSSLIARKIGEVKDILVASPDYLSANPAPNH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H+L+    LI      +  + +    +        Q N+   +   C  G GI 
Sbjct: 180 AEELSNHSLLKGSPLI-----KWTLINSKGESVVNVERGRFQANALNVVRSSCSEGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD ++K   ++ +LVRI+ D       +Y  Y        K++ F +F+  
Sbjct: 235 LMPDVMIKEYIESGDLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 287


>gi|254492352|ref|ZP_05105524.1| LysR substrate binding domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224462244|gb|EEF78521.1| LysR substrate binding domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 305

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 135/302 (44%), Gaps = 13/302 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++++ F  +  +GS T AAEQ++  +S++S++++ LE  +   L  R  R  TLT  G 
Sbjct: 4   LEEMQTFVRIVEAGSITRAAEQMNTVKSAVSKRLTDLEKRLATSLLKRTTRKQTLTGAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +   +  L +     SG++R+A  I  G   L   L+ F   +PDI+ 
Sbjct: 64  DYYQHCVRILDDIYEVETALSDEQSALSGRIRLAVPITFGLMHLSPALRIFNQQHPDIRF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  +++  D+  +  D AIR+   +  SSLI RKL +  +    +P Y      P + +
Sbjct: 124 DIDFNDRQQDLVAEGVDLAIRVSN-LTDSSLIARKLTSTRLLICGSPGYFAEHGTPQTAE 182

Query: 185 ELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L   H  + +  +       +         +     + L  N+   +    + G G+ L
Sbjct: 183 DLLYGHVKLQYTHVSSS----WQLTGHNGDTLSVNLPAVLTANNGQFLHDAAIEGKGLIL 238

Query: 244 LPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARD 296
            PD+I  D      L+ ++E  +I     VY  YP+    + +++   +F+   F +  +
Sbjct: 239 SPDFICSDAISKGLLMPVLEQSLIHTEIGVYAVYPQTRFLSRRVRLLIDFLKAYFEERPN 298

Query: 297 WK 298
           W+
Sbjct: 299 WR 300


>gi|159186099|ref|NP_356363.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141233|gb|AAK89148.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 302

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF   A   SF+ A  +L LS S++S+ ++ +E  +G +L  R  R +TLT +G   
Sbjct: 7   EMEVFVSAAELQSFSAAGRRLKLSPSAVSKLVTRIEDRLGTRLLVRSTRMMTLTPEGEIY 66

Query: 67  HRVTSEVYHKLETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +   +  T+  +       P G LR+  ++  G+  L   +  FL LYP++Q+ 
Sbjct: 67  LARARRILADIADTEQIVAAGGKLVPRGLLRVNASVGFGERFLLPLIPAFLELYPEVQLD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  I +  +  D AIR    +  SSL  RKL+       A+P Y+K    P +  +
Sbjct: 127 ISLTDGIIGLIEERTDIAIRSGA-MDDSSLKARKLLESRRVIIASPSYIKRHGMPQTPAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN  +F          F    + +     P      VNS + + + C+ GSG+  + 
Sbjct: 186 LAAHNCFSFNFRRSLNEWPFRDPGSTE-IYRLPVSGNSSVNSGMIMRRLCLAGSGLGRVG 244

Query: 246 DYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
            + V+   D   LV ++ED        ++  +        +++AF +F+  
Sbjct: 245 QFHVQPDIDAGTLVPVLEDYNPDDIEEIHAVFAGHEHLATRIRAFIDFLAE 295


>gi|91780995|ref|YP_556202.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91693655|gb|ABE36852.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 307

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 135/296 (45%), Gaps = 9/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   + VF  VA + SF  A   L +S S++ +++S LE ++G++LF+R  R + LT +
Sbjct: 1   MESSAINVFVQVAETRSFAAAGRLLGISASAVGKRVSALEEQLGVRLFHRSTRSVALTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G      +  +  ++E  Q EL + ++ P G+L+++  +     L    + +F   YPD+
Sbjct: 61  GGLFLERSRRILGEIEAAQAELSQVNLSPRGRLKVSLPLVAEPFL--SVMAQFKQAYPDV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L   ++ +D+  +  D  IR       S L  R+L +  M    +P YL  C  P +
Sbjct: 119 DLDLEFTDRRVDVIDEGFDAVIRSGDA-PDSRLTARRLGSFSMLLVGSPDYLARCGTPET 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI 241
             +L +H  I F    P   +   W    D    + ++S  +  N+  + + + + G GI
Sbjct: 178 ASDLSQHACIQF--RYPNTGKLQVWPLDQDEITADLQLSAAIICNNLETRIFFALQGLGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LPD+ ++ +     L+ +M             +P       +L+ F +F+  + 
Sbjct: 236 AYLPDFAIRQHLAAGRLIHVMPSCSEADTMFRIMWPSGKHFAPRLRVFIDFLCERL 291


>gi|307729369|ref|YP_003906593.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583904|gb|ADN57302.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 310

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 132/287 (45%), Gaps = 7/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  +  V  +GSF+ AA++L L Q ++S+ I+ LE  +G++L +R  RGLT T+ G + 
Sbjct: 6   AMETYVCVVEAGSFSAAAKRLKLGQPAVSKSIAQLEDRLGVRLLFRSTRGLTPTDAGQRF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +        +++  +  ++++S   SG LRI   +   +  +   LK FL  +P++QI +
Sbjct: 66  YEHARRAIEEVDLAEQVVRDASTGLSGVLRIGAAVTFARLHILPALKRFLDSHPNLQIDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +LD++ ID+     D A+R+   +  S++  R++          P Y      P S  +L
Sbjct: 126 VLDDRTIDLLEKGVDVALRMGS-LDDSTMTARRIARGRRLVVGTPGYFAEAGVPKSPADL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  + +          F+      + +       + V++   I    + G G+A+  +
Sbjct: 185 SQHQAVVYSLRGGGESWAFS---QNGKEVAVVVSGRVSVSAAEGIRTTVLGGMGLAIASE 241

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++      +  +  ++ D   P   ++  +P     + K +AF  F+
Sbjct: 242 WMFSPELADGTVKAVLTDWELPPIDLWAVFPAGRLVSAKARAFVAFV 288


>gi|206562544|ref|YP_002233307.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038584|emb|CAR54543.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 300

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 135/297 (45%), Gaps = 12/297 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++++  +   G+FT AA+ L L + ++++ +  LE E+G++L  R  R +++T 
Sbjct: 1   MDRLQTMQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGVRLLNRSTRRVSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   H    ++   ++       +    P G+LRI   + L + ++   L +F   YP 
Sbjct: 61  EGEAFHARCVQLLGSIDDAFASFPKQRAVPKGRLRIDVALALAKTVVIPALPDFQQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++  D+  +  DC +R+   ++ SS++ R +  + M   A+P Y+     P 
Sbjct: 121 IELVLGASDQPADLIGEGIDCVVRVG-TLKDSSMVARTVGAVPMATCASPAYIARHGLPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H  I F     + + ++ +    D  +     S L  ++  +++   + G GI
Sbjct: 180 TLDDLRMHRAINFFTGRNRRVLEWTFRPHGD-TVAVKLASSLLTDNSEALLSCGLAGLGI 238

Query: 242 ------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 AL P     D+  LV ++  V      V   YP       K++AF +++  
Sbjct: 239 VHALRPALQPSI---DSGQLVELLPGVPAVPKPVSVLYPNRAHLPDKVRAFIDWLTE 292


>gi|220916101|ref|YP_002491405.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953955|gb|ACL64339.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 300

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 148/296 (50%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LRVF  VAR+ SF+ AA +L + +SS SR ++ LE E+G++L +R  R ++L+  
Sbjct: 1   MDLDLLRVFTAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+   + +   LE+   EL E   +PSG LR+   +D+G   L      + L YP +
Sbjct: 61  GTGLYDRIAPLLQGLESALGELPEREEEPSGLLRVTAPVDIGIFFLAELTARYTLRYPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L ++ +D+  +  D A+R+   ++ S+L+ RK   + +  +A+P YL     P +
Sbjct: 121 SVELDLSSRLVDLVAEGFDVALRVAPGLKDSTLVARKASPVQLQLFASPLYLARRGTPRT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL+ H+ +TFG    K       L      +     S +     L + +    G+GI 
Sbjct: 181 EVELEAHDWVTFGTQARKLR-----LEGARGTVEVTPRSRILCPELLFVREAMRAGAGIG 235

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LLP ++ + +     LVR++  ++     +Y   P       K+ AFR+ +    R
Sbjct: 236 LLPSFMAEQDLAAGTLVRVLPRLVRSGGNLYVVTPATRHVPRKVSAFRDLVLELVR 291


>gi|116252416|ref|YP_768254.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257064|emb|CAK08158.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 295

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 136/296 (45%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+     A SGSF  AA++L +S + + R+I  LE E G+KL  R  R   LTE G
Sbjct: 3   DLLNLQTLIAAATSGSFAGAAKRLGISPAMVGRRIQALEQEYGVKLIERTTRTQRLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+     + +  +LE      +  +   SG+LR++    LG   L   + E    +P + 
Sbjct: 63  SRFLVKANRIIDELEELNDISRPDAEAMSGRLRLSAPTTLGIKRLAPVMAELAERHPALS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++++D+  +  D AIR+ + ++ SSLI R++ + H    A+P YL     P   
Sbjct: 123 VELNLSDRNVDLVAEGYDLAIRIGE-LKPSSLIARRVGSYHFVCCASPAYLDRFAVPERP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L     I   +L+P+    F         +G      +++++  ++    + G+G+  
Sbjct: 182 EDLRLGRCILNLNLVPRDEWPFETEGRESFTVGV--RGNIEIDNGEALRMAALAGAGVIY 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +P  +V D   +  LV ++         ++  +P      G++ A    I    RD
Sbjct: 240 VPVDLVADDIADGRLVEVLAGWRKLVLPIHAIHPSRRFVPGRIGAVIEAIARGLRD 295


>gi|50119682|ref|YP_048849.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610208|emb|CAG73651.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 301

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  +   GSF+ AAE+L L ++++S  I  LE  +G++L  R  R + +T+
Sbjct: 1   MDHIQAMRVFVRIVELGSFSRAAERLALPRATVSNTIKQLEGRLGVRLLQRTTRQVQITD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +    ++  ++E       +  ++P GK+R+     L + ++   L EF   YP 
Sbjct: 61  EGRVYYERCLQLLAEIEEIDTLFTQQKLQPVGKVRVDMPHSLAREIVVPALGEFYARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L  ++  I++  +  DC +R  +     +L  R L ++     A+  YL     P 
Sbjct: 121 VTLMLSANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQVTCASADYLARYGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ EL  H+++ +  L  + +    +++  +R I       LQVN   + +     G GI
Sbjct: 180 SLDELSGHHMVGYFSLRTEYLYPLEFMSGDER-ITRMLPGTLQVNGADAYIAGACAGLGI 238

Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P      + D   LV I+ ++  P+  +Y  Y        +++ F  ++  
Sbjct: 239 IQAPRRGLISLLDGGELVEILPEIPPPAMPLYVMYTPGRFLAPRIRVFIEWLDE 292


>gi|107026182|ref|YP_623693.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|105895556|gb|ABF78720.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
          Length = 322

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +L+    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAELDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H  +          E     +  +  + E + +  QVN   ++      G G
Sbjct: 180 QTPDELPNHVCLRLDTPASPAGEWRLERSGGEEAVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ D    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPDYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|307307304|ref|ZP_07587040.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306901818|gb|EFN32418.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 318

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 133/299 (44%), Gaps = 12/299 (4%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +D L     F  VA  GS T  A  L  + S +SR I+ LE  +G +L  R  R L
Sbjct: 1   MGRRFDHLGDVEAFITVAEKGSMTEGAVTLSTTPSVLSRAITRLEARLGAQLMRRTTRRL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           +LT++G          +  ++  +  +Q  +    +G +RI+     G   L   L  F 
Sbjct: 61  SLTDEGRAYLEQARAAFSMIDDAERAIQGPTGASLTGHVRISVPTTYGHYRLPAMLDRFT 120

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            ++P++Q++L + N+++D+  +  D AIRL  P  +S L+ RKL    +   A+PHYL+ 
Sbjct: 121 QIHPEVQVELSITNRNVDLVAEGYDLAIRLG-PFPASGLVARKLEDAPLRLVASPHYLER 179

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQY 234
              P S+++L  H  + F  ++P       WL  V+    +  P       +  L ++  
Sbjct: 180 AGVPRSVEDLATHQCLPF--VMPSTGRCAPWLFRVEGRDVDWTPPGRIRVFDDVLGVVSL 237

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              G GI    D+IV+   +   LV ++E     S      +    + +   +   +F+
Sbjct: 238 AENGLGICQTYDFIVRGRIEQGRLVDVLEHARGRSRPFSLIFAPHRRLSAATRTLIDFL 296


>gi|167570187|ref|ZP_02363061.1| transcriptional regulator [Burkholderia oklahomensis C6786]
          Length = 313

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 129/296 (43%), Gaps = 5/296 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP+
Sbjct: 61  AGERYLQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYQQRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++N   P 
Sbjct: 121 VHVDLTLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGVTFSVVCASRGYIENHGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  +          +++  +               +VN   ++      G GI
Sbjct: 181 RPRDLANHVCLGMV-APGLYWDEWKLMGPRGEESVTLAPPPFRVNVAEALAAGIREGMGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP Y       N + VR+M +  +    +Y  Y        K++ + +F+  + 
Sbjct: 240 GVLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALYASRQYLDAKIRTWVDFLRDEL 295


>gi|162148552|ref|YP_001603013.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787129|emb|CAP56719.1| putative transcriptional Regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 294

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 129/293 (44%), Gaps = 12/293 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +  F  V  +GSF+ AA QL + Q ++S+ ++ LE  + + L  R   GLT TE
Sbjct: 1   MDRYQAMTTFVRVLETGSFSAAARQLGVGQPAVSKTVAQLEARLQVSLLIRTTHGLTPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +        + +  ++  + +S+  SG+LR++      +  +   L  FL  +P 
Sbjct: 61  AGQNFYERARNAIQEADEAELAAKGASIGLSGRLRVSAATTFSRLHVIPKLPAFLAAHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +  +LD++ ID+  +  D ++R+   +  S+ + RK+ T      A P YL     P 
Sbjct: 121 LDVDFLLDDRMIDLVAEGVDISLRMGA-LSDSTAVVRKVATGRRSVIATPAYLARAGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
              +L  H+ + +  L         W  T D       +S  L+V++   +    +   G
Sbjct: 180 HPADLANHDTVIYSQLPSV------WSFTRDGAAVSVSVSGRLRVSAAEGLRAAILADMG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +  D++     +   +VR++E    P   ++  +P     T K + F  F+
Sbjct: 234 LTITSDWMFAPELERGAVVRVLEGWSLPPIDLWAVFPAGRMMTAKARQFAGFV 286


>gi|148556135|ref|YP_001263717.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148501325|gb|ABQ69579.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 308

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA  GSF+ AAE L L+++++S+ IS LE  +   L +R  R L+LTE G
Sbjct: 6   DFEAWAIFAKVAEKGSFSQAAEDLGLAKTTVSKAISRLEERMRTTLLHRTTRKLSLTESG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +       + ++ E +  P G +R+A +   G+  L   L  F+  YPDI+
Sbjct: 66  RLSLDRALRIMADGVAIEADILEEAAIPRGLIRVACSTGFGETALAPMLPAFMAAYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +    + +D+  +  D AI++    + SSL   +L+T+     AAP  ++    P   
Sbjct: 126 LDITFSEQRVDLVAEGYDLAIQIGDNAEDSSLRISRLLTLRRRVTAAPSLIERHGRPRHP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  + ++    +      + ++    D     P    L +NS L +M   + G G + 
Sbjct: 186 SDLAHYPMLIPSHV--PWGREVDFTGPGDEHFHVPVSGALHMNSTLGLMHALLAGVGASA 243

Query: 244 LPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +P+Y       +  LV +  D   PS  +    P       +++A   F+  +
Sbjct: 244 VPEYFTWEATRDGLLVDLFPDWTIPSSPICIVTPPGRARPARVRALLEFLREQ 296


>gi|148553478|ref|YP_001261060.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498668|gb|ABQ66922.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 301

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L +F  VA  GSF+ A  +L L+ S++SR I  +E  +G++L  R  R LTLT +G  
Sbjct: 13  RALELFAAVAAEGSFSAAGRKLGLTPSAVSRAIDRIEARLGVRLLLRTTRALTLTVEGQA 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   L+  +  + +    P G+LR++ ++  G+  +   L +F+ L+P I + 
Sbjct: 73  YLGAARRILADLDDAEQAIADQGA-PRGRLRVSVSLAHGRQCVVPLLGDFVRLHPHILVD 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +D++   AD AIR   P+  S+L  RKL        A+P YL     P   ++
Sbjct: 132 VGLTDRVVDVAGGQADVAIRFG-PLADSALTARKLGETRRVIVASPDYLARHGTPSVPED 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + F     + +  F       R         ++ N+  ++ Q    G GI  + 
Sbjct: 191 LHDHVCLNFNFRRVEPVWPFR---KDGRDYALGVRGSIEANNGETLAQLATAGVGITRVG 247

Query: 246 DYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + V +      LV I+E+        ++  +        +++ F +F+  + R
Sbjct: 248 AFSVVERIAAGRLVPILEEYNPGDVEAIHAVFVGGANTPARVRVFVDFLAERLR 301


>gi|116248839|ref|YP_764680.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253489|emb|CAK11881.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 300

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 130/294 (44%), Gaps = 7/294 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF + A   SF+ A  +L +S S++S+ ++ +E  +G +L  R  R +TLT +G    
Sbjct: 1   MEVFVMAAELQSFSAAGRRLKMSPSAVSKLVTRIEDRLGTRLLVRSTRTMTLTPEGEVYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVK-PSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +   +  T+  +       P G LR+  ++  G+  L   +  FL LYP++Q+ +
Sbjct: 61  SRARRILTDITETEQIVAGGGKMIPRGLLRVNASVGFGERHLLALIPAFLELYPEVQLDI 120

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  I +  +  D AIR    +  SSL  RKL+       A+P YL     P + Q+L
Sbjct: 121 SLTDGIIGLIEERTDIAIRSGA-MDDSSLKARKLLESRRVIVASPAYLDAKGIPKTPQDL 179

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN  +F          F    T +     P      VNS + + + C+ GSG+  +  
Sbjct: 180 ANHNCFSFNFRRSLNEWPFRNPGTSEV-YRLPVTGNTAVNSGMVMRRLCLSGSGLGRVGQ 238

Query: 247 YIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + V+   D   L+ ++E+        ++  +        +++AF +F+     D
Sbjct: 239 FHVQPDIDAGKLIPLLEEYNPHDMEQIHAVFAGHEHLAARIRAFIDFLAEHLSD 292


>gi|114048997|ref|YP_739547.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113890439|gb|ABI44490.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 317

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 138/299 (46%), Gaps = 8/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L L+++++SR+I+ LE++ G +L +R  R L LTE 
Sbjct: 1   MDLNRVQIFAQVVEQGSFTGAAKALGLTKATVSRKIAELESDTGTQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   +++   L++ + +L        G L+I   I+LGQ  L     +FL LYPDI
Sbjct: 61  GSSYYNRINKILSDLQSAENQLSAHQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++      + L    LV  +    A+P YL     P  
Sbjct: 121 TIEAELTNRKVDVIEEGIDLLFQIADS-SDTRLQSYSLVNAYKSLMASPSYLAEHGTPKV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L KH  I         +E    L      +    ++ L VN+     +  + G GI 
Sbjct: 180 PQDLAKHKAIRLQSA---HIEGAWKLFDGQSWVVIEPVTQLTVNNVTIAREAAIAGLGIT 236

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDW 297
            +P  I ++      LV +++D       V   YP+      K + F  FI+    + W
Sbjct: 237 AVPSIIAQEAIEKGYLVSLLDDYPMVQTKVVLSYPKRAYLPRKYRVFIEFIYTALFKRW 295


>gi|218675195|ref|ZP_03524864.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 293

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 126/291 (43%), Gaps = 9/291 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V       GS + AAE+L +S++  SR I+ +E   G +L +R  R L+LT  G ++  
Sbjct: 8   KVLLKTVERGSASAAAEELGMSRAMASRYIAAMEDWSGTRLLHRTTRQLSLTSAGERVLD 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
           +  E+    +    E+   +  P G LR+     L +  L   L +F   YP I++ L +
Sbjct: 68  MCREIVRVAD-AVTEVASHADTPHGLLRVTAPSILAEAQLIPLLSDFADAYPRIKVDLQI 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ID+  D  D AIR+   +   SLI ++L       YA+P YL+    P +  +LD 
Sbjct: 127 SDRTIDLVQDRIDLAIRIANRL-DPSLIAKRLGQCSSLLYASPRYLQEYGIPSTPADLDD 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  +T+  L          L   +  I        Q N  +++ +  + G GIA+LP + 
Sbjct: 186 HRCLTYTHLGGTEWS----LKNFESQIVMSVEGTFQTNDAVALRRAALSGLGIAMLPCFA 241

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                    LV ++ +    +  ++  Y          +   +F+  +  D
Sbjct: 242 ADQEVRAGQLVVVLPEWKPSTLGIHALYVSRKHLPMAARVLIDFLATRLVD 292


>gi|186471148|ref|YP_001862466.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197457|gb|ACC75420.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 318

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 137/300 (45%), Gaps = 9/300 (3%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS D       F ++A+  S + AA  L L+  + ++++  +E  +G +L  R  R ++L
Sbjct: 1   MSTDSASDFEFFILLAKLKSMSGAARALDLTPPAATKRLGIIERRLGARLVNRTTRSVSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G    R  +++  ++   +  +  +   P G LRI  T+  G+  +   + +F   +
Sbjct: 61  TPEGETYLRYATQIVGQVREMEEAISGAGRDPQGLLRINATLGFGRTTIAPLVSDFAKRF 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++++Q  + ++ +D+     D AIR  + +  S L  R++++      A+P YL+    
Sbjct: 121 PNVEVQFEVTDRPVDLIEGAFDMAIRFGE-LPDSRLSARRIMSNRRFLCASPKYLERFGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P  + +L +H  I              W   V+  I   ++   L  N    ++++ + G
Sbjct: 180 PERVDDLQQHRCIIHRQNDDAYG---VWRYIVNDHIEAIKVKGALSSNDGDIVLRWALDG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI +  ++ +     +  L  ++ + + PS  ++  YP     T + +AF +F+  + +
Sbjct: 237 HGILIRSEWDLAKYVQSGRLKLVLPNTVLPSADLFVYYPRQRNQTARARAFIDFLVDRFQ 296


>gi|160896115|ref|YP_001561697.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361699|gb|ABX33312.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 324

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D       F  VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R ++LT 
Sbjct: 14  MDKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLMVRTTRRISLTH 73

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +   +   +  +    VK +G LRI      G+  +   +  F  L+PD
Sbjct: 74  EGSAFLEDCQRLLSDVSNAEASVSAGGVKATGHLRITAPAGFGRRHVAPLVPLFRDLHPD 133

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D++ +  DCA+R+   +  S+L+  ++        A P YL+    P 
Sbjct: 134 VTISLNLSDRVVDLAGEGFDCAVRVGD-LPDSALVSVRIADNRRQCVATPAYLERRGTPR 192

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
              EL +H+ +T      +       +   D    E         L  +    +  +C+ 
Sbjct: 193 HPSELTQHDCLTLSSDASQTRGWAFRIPHPDSGTSEVVHFKPGGPLDCSDGQVLHDWCLG 252

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIA    + V+    +  LV ++E    P   ++  +P+      +++ + +++
Sbjct: 253 GWGIAWRSTWEVEAEITSGRLVAVLETFAAPPNGIFVVFPQRKHMPLRVRLWIDYL 308


>gi|168230418|ref|ZP_02655476.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194469052|ref|ZP_03075036.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194455416|gb|EDX44255.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205334945|gb|EDZ21709.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 307

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 69  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 189 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 247

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++++ +  +   Y  YP       KL+ F ++   KA
Sbjct: 248 DVHEDLQDGRLCSVLDEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297


>gi|323530033|ref|YP_004232185.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323387035|gb|ADX59125.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 307

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 127/298 (42%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F + A  GS T AAE+L LS ++ SR +S LE  +G++L  R  R L LT+
Sbjct: 1   MDRFTQMEFFVLTADLGSLTRAAERLGLSNAAASRMLSALEDRLGVRLVERTTRRLWLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + HR  S +  +         E S +P G LR+  ++      +   L  F    P+
Sbjct: 61  AGREYHRRCSALIAEAAEADAAAGELSARPRGVLRVTCSVSFALLHIAPWLPRFRERNPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   N+  +      D A+R R+    S ++ +KL        A+P YL     P 
Sbjct: 121 LRVHIEAANRYPNFIEAGIDVAVRTREHESDSGIMVQKLAQTRRVFAASPAYLARRGWPG 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           + + L  H+L+ +       +            + E RI+  L+ N    I      G G
Sbjct: 181 TPEALASHDLLVYALAADPYLLHLR----KGDEVREVRIAPVLESNEGQVICAAARAGMG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I + P YIV+D+     LV ++ED   P   +   Y        K++ F   +    +
Sbjct: 237 ILIQPLYIVRDDIVAGRLVPVLEDWQLPPLIINLAYQSRRHQPAKIRVFAEALREHMK 294


>gi|49083966|gb|AAT51162.1| PA0056 [synthetic construct]
          Length = 307

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 128/288 (44%), Gaps = 8/288 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  V  SGS T AAE+L +S++ +SR ++ LE  VG +L +R  R L+LT+ G++L  
Sbjct: 8   RVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWVGARLLHRSTRRLSLTDAGAELLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    +  Q   Q     P G LRI +++   Q  L      F+  YP   I L +
Sbjct: 68  QCREMLAVADAMQATGQTRRDNPRGTLRITSSLSFAQAWLTRAAAAFVERYPGTAIDLQV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +++  +  D A+R+   +   +LI R+L        AAP YL+    P   ++L  
Sbjct: 128 NSQVVNLVEERIDLALRIANQL-DPNLIARRLGECRSVICAAPDYLRRHGTPRRPEDLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        +          P   P    L  N    +++    G+GI+  P Y 
Sbjct: 187 HNCLTYSYFGRSLWQ----FKRDGEPTSVPVGGSLSANESTVLLEAAAAGAGISQQPLYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 +  LV ++ +       ++  Y    +    L+A  +F+  +
Sbjct: 243 AAPLIRSGRLVALLPEWSPQVLGIHAVYASRRQMPPALRALLDFLVER 290


>gi|86157358|ref|YP_464143.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773869|gb|ABC80706.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 300

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/296 (29%), Positives = 149/296 (50%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LRVF  VAR+ SF+ AA +L + +SS SR ++ LE E+G++L +R  R ++L+  
Sbjct: 1   MDLDLLRVFAAVARTASFSAAARELRIPKSSASRAVARLEEELGVQLLFRTTRQVSLSAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+   + +   LE+   EL E   +PSG LR+   +D+G   L      + L YP +
Sbjct: 61  GTGLYDRVAPLLQGLESALGELPEREEEPSGLLRVTAPVDIGIFFLAELTTRYTLRYPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L N+ +D+  +  D A+R+   ++ S+L+ RK   + +  +A+P YL     P +
Sbjct: 121 SVELDLSNRLVDLVAEGFDVALRVAPGLKDSTLVARKASPVQLQLFASPLYLARRGTPRA 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL+ H+ +TFG    K       L      +     S +     L + +    G+GI 
Sbjct: 181 ETELEAHDWVTFGTQARKLR-----LEGPRGTVEVTPRSRILCPELLFVREAMRAGAGIG 235

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LLP ++ + +     LVR++  ++     +Y   P +     K+ AFR+ +    R
Sbjct: 236 LLPSFMAEQDLAAGTLVRVLPRLVRTGGNLYVVSPASRHVPRKVTAFRDLVLELVR 291


>gi|119900148|ref|YP_935361.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119672561|emb|CAL96475.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 306

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR++  V R   F  +A +L +S + +S++I+ LE  +G KL +R  R ++LTEQG 
Sbjct: 7   LEDLRLYCTVVRRRGFAASARELGVSNAYVSKRIALLEDALGAKLLHRTTRSVSLTEQGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            + +    +   ++     +    + P+G LR+ T+   G+N +   L      YP ++I
Sbjct: 67  VVLQWAQRIVDDVDRLAEAVSAEKMAPAGLLRVCTSSGFGRNRVGPALAALAERYPAVEI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L ++ +D+  +     IR+   ++   LI R++        AAP Y+     P  + 
Sbjct: 127 QLELLDRPVDLIGEGFQLDIRVGA-VREPDLISRRIARNERVLCAAPDYVARHGTPADLA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H  I   +           L   D P        L  N+   + Q+ + G GI L 
Sbjct: 186 ELARHRCIVIRERDQDFGRWT--LTGPDGPETVKVGGPLSANNGEVVRQWALAGHGIILR 243

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V        LV+++      +  V+  YP  L ++ K++    F+
Sbjct: 244 SRWDVGPALARGELVQVLPAYRQEA-DVWAVYPSRLSSSAKVRVCVEFL 291


>gi|330900081|gb|EGH31500.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 309

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 132/290 (45%), Gaps = 4/290 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF +VA  GSFT AAE+L+L+ S+IS+ I+ LE  +  +LF R  R L+LTE G 
Sbjct: 7   LKGIDVFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  + V   LE  +I L  +  +P GK+RI      G+  +   + +F+  +P +Q 
Sbjct: 67  TFYRTCTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPLSI 183
            +   ++ +D   +  D  +R+       + +  +   T  +   A+P Y+    +P ++
Sbjct: 127 HVSFSDRYVDPVHEGIDIVVRIGGSDAWPAAMAHQFFGTQKLIFCASPEYVNQYGQPKTV 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +LD H  I +G      +  +                 + V      +   + G GIA 
Sbjct: 187 SDLDDHQCIGYGQNDGMAIPWYFKGRQPGDMERRIMHPHIAVGDGEGEVMAVLAGLGIAQ 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++V+   ++  LV ++ D+ T    +   +  + +   K+ A   ++
Sbjct: 247 LPTWLVQVHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAYL 296


>gi|54293278|ref|YP_125693.1| hypothetical protein lpl0326 [Legionella pneumophila str. Lens]
 gi|53753110|emb|CAH14557.1| hypothetical protein lpl0326 [Legionella pneumophila str. Lens]
          Length = 287

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 135/290 (46%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  V     F  AA +  +S +++SRQI+ LE E+  +L  R  R L+LT+ G+
Sbjct: 4   FDQITYFIAVVEEHGFAAAARKFGVSTAAVSRQIARLEAELKAELLVRTTRKLSLTDIGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   +   +L   +I +  S  +  G L + ++       L   L EF+ L P +QI
Sbjct: 64  RYYQQCKKTLLELNEAEIAIASSRNEAVGILNVTSSRYFAMRFLLPYLPEFMELNPKLQI 123

Query: 125 QLILDNKDIDISMDYADC--AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L  +  D++ +  D    + +  P     L+++++ T      A+P YL     P S
Sbjct: 124 KIELAERFPDLAQENVDVLFGVSMEGP---PELVRKRVSTTRYVLCASPDYLAKNGIPES 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL KH  IT     P  +  F      ++   EP    L +N   ++ +  +LG GI 
Sbjct: 181 PSELGKHRYITHSMRNPDNLVTF---KDNEQIYVEP---VLWLNDSRALCECALLGMGII 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L +YIV +   +  L+ ++ +    S +VY  Y  +     K++ F +F
Sbjct: 235 KLHEYIVAEALQDGRLIEVLPEFQESSLSVYLYYQASRYLQPKIRRFIDF 284


>gi|188592136|ref|YP_001796734.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|170938510|emb|CAP63497.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 295

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 120/289 (41%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR GSFT AA  L ++QS++S+ + GLE  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLAFVTVAREGSFTRAAASLGVTQSALSQAVRGLEERLRIRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +     + ++E     L     KP+G +RI    ++   +L   L   L  YPDI+
Sbjct: 65  ERLMQAIGHRFDEIEAELDALTALRDKPAGTVRITCGDNVLHTILLPRLTPLLQEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  ++    DI  D  D  +RL   I    +       + M   A+P Y      P + 
Sbjct: 125 LEFDVNYGFRDIVADRFDAGVRLGNTIDKDMIAVPIGPPLRMAVVASPAYFAAHPPPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I     +P     + W      R +       L  N+    +   + G GI 
Sbjct: 185 KDLMAHRCI--NQRMPTSGGLYVWDFERRGRQVNVRVDGPLIFNTTQPQVDAALAGLGIT 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LLP+  +    +   LVR++ED        +  YP   + +        
Sbjct: 243 LLPEDELMPHIEAGRLVRVLEDWCPKFNGYHLYYPSRRQPSPAFALVVQ 291


>gi|200388865|ref|ZP_03215477.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605963|gb|EDZ04508.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 307

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 69  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 189 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 247

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++++ +  +   Y  YP       KL+ F ++   KA
Sbjct: 248 DVHEDLQDGRLCSVLDEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297


>gi|254247014|ref|ZP_04940335.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124871790|gb|EAY63506.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 320

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + + 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +L
Sbjct: 127 LSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +                A   R         L VN    +    + G+GIALL  
Sbjct: 187 ANHNYLRRDSNSTMLDSLVIDAAAASRVSLN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|254236795|ref|ZP_04930118.1| hypothetical protein PACG_02808 [Pseudomonas aeruginosa C3719]
 gi|126168726|gb|EAZ54237.1| hypothetical protein PACG_02808 [Pseudomonas aeruginosa C3719]
          Length = 317

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 136/298 (45%), Gaps = 13/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +GSFT A++QL+ + + +SR ++ LET +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFVCVAETGSFTAASQQLNTTTAYVSRAVANLETHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+GKL++ +   +GQ+ +   +  +   Y D
Sbjct: 61  AGQRYLLRCEQILAYVEEAEAEASDAHARPAGKLKLHSMTGIGQHYVIRAIAGYRQQYRD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + N+  D+  +  D AI +   +  S  I +++   +    A+P YL+    P 
Sbjct: 121 VTFDLTMANRVPDLLDEGFDVAIVVASELPDSGFISQRIGETYSILCASPEYLRLNGTPS 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC----LQVNSYLSIMQYCVL 237
              EL  H+ +    L+   +    WL   D P G+  +S      QVN   ++ +    
Sbjct: 181 EPSELASHDCL---RLVSPVVPLDRWLF--DGPNGQEMVSIGASPFQVNVGDAMTEAIRS 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI +LP Y   ++     LVR++         V+  YP       K+K +  ++  
Sbjct: 236 GLGIGILPVYSAIEDLGKGTLVRVLPQHRLQQLNVFALYPSRQYLDAKIKTWVEYLKE 293


>gi|296159338|ref|ZP_06842163.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295890322|gb|EFG70115.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 309

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 128/298 (42%), Gaps = 13/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V  +G+F+ AA QL  + S++SRQI  LE  +  +L  R  R + +TE G+++
Sbjct: 12  DMAVFARVVDAGNFSVAARQLGSTPSTVSRQIKRLEDALATRLLERSTRTVRVTESGAQV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++            + + KP GK+ ++      ++++   +  FL  Y ++ +QL
Sbjct: 72  ARFCRDMVSAASGAVDAAGQLAGKPQGKVSVSAPTQFAKSVIHPLIPGFLRAYDEVDLQL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  ++D+D   D  D  IRL +      L  R+L  +     A+P YL+    P   ++L
Sbjct: 132 LFTDRDVDPLADDIDLVIRLTEH-PPQGLAGRRLGAVRWLLVASPAYLRERGTPAQPRDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            KH  I  G+      +D  W            +      N   + ++  +   GIA +P
Sbjct: 191 LKHACIYLGETA----DDNRWRFRRGTETQSVDVKGRYIANHAGARLEAALQDFGIACVP 246

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++   +      LV+++ D    +       +  YP       K++A  +++     D
Sbjct: 247 EFAAAEWLPGGELVQVLPDWNLEARAYVGSVWLLYPPNRFLPPKVRALIDYLVEHLHD 304


>gi|239820457|ref|YP_002947642.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805310|gb|ACS22376.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 308

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 133/299 (44%), Gaps = 9/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D      VF  V   GSFT AA+ L  S ++++R ++ LE  +  +L  R +R L+LTE
Sbjct: 1   MDRLRAYEVFVTVVARGSFTKAADALDTSPANVTRYVNELEAHLRTRLMNRTSRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +  ++  T+     +S++P G+LRI   +  G  +L     +F+  YPD
Sbjct: 61  GGEALFDRAKSILEEVAETEALATTASLQPRGRLRINAPLSFGSLVLAPLWPKFMAKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L ++ +DI  +  D AIR+ +   S + I R+L        A+P YL     P 
Sbjct: 121 VELDIALIDRVVDIVEEGYDLAIRISR-TTSGNHIARRLGRSQNLVCASPGYLAAHGMPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           +  +L +H  + +         D    A     +   R+   L+ N+  +     + G+G
Sbjct: 180 TPADLSRHPCLGYTY---GATSDEWQFAGPGGTLESVRVRWALRANNGETARAAALAGAG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   P +++ ++     LV +M     P   +   Y      + K++   +F+    +D
Sbjct: 237 VIWQPSFVIGEDVRAGRLVEVMPGYHMPPVDILAIYASRRHLSAKVRMMVDFLVDAFQD 295


>gi|330504445|ref|YP_004381314.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918731|gb|AEB59562.1| transcriptional regulator, LysR family [Pseudomonas mendocina
           NK-01]
          Length = 299

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 131/293 (44%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F    R G F+ AA QL L+ SS++R ++ LE E+G  L  R+ R ++++E G   
Sbjct: 6   ALRTFVATVRCGGFSAAARQLGLATSSVTRAVNALEQELGCVLLNRNTRQISVSEAGRDY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L+     + +   +  G+L ++  ++  + ++  +L + L  +P +++ L
Sbjct: 66  FERALAILDALDEADAAVADKDGEVRGRLAVSVPVEFARRIIAPHLGKLLQRHPQLEVSL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+  +  D A+RL   I S  ++ +++ +      A+P YL           L
Sbjct: 126 RVTDEVVDLLSERVDLALRLGSSIVSDDVVSQRVGSFRRWLVASPQYLACNSPITQPDAL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + +    P     F       + +  P    L+ N+   + Q  + G GIALL D
Sbjct: 186 QMHACLQYDYGSPANYWRFE---KDGKTLQVPVSGRLRSNNADILRQAALDGQGIALLSD 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFL 292
           ++V+D+     L R++ D           ++  Y    + + ++ AF  F+  
Sbjct: 243 WLVRDDVDSGKLQRLLPDYDVAPGPHEGTIHLLYLPNHRGSRRIAAFSEFLQE 295


>gi|172063447|ref|YP_001811098.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995964|gb|ACB66882.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 322

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 127/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASRDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  +          E        +  + E + +  QVN   ++      G G
Sbjct: 180 KTPDDLPNHVCLRLDTPASPASEWRLERGDDEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDLREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|50956505|gb|AAT90754.1| putative lysR-family transcriptional regulatory protein [Yersinia
           enterocolitica]
          Length = 303

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LETE+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMTNFSWLEYSVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLKAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGEVEVLFKKYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|315180507|gb|ADT87421.1| hypothetical transcriptional regulator, LysR family protein [Vibrio
           furnissii NCTC 11218]
          Length = 307

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 125/288 (43%), Gaps = 5/288 (1%)

Query: 12  YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTS 71
               R+GSFT A E+L L+ S++ + ++ LE ++G KL +R  R LT T +G +      
Sbjct: 15  VETLRTGSFTAAGERLGLTGSAVGKSVTRLEKKLGTKLLHRTTRSLTPTPEGQRYFDGWI 74

Query: 72  EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK 131
            +  ++++ +  +   SV+ SG L I      G+  +   L E    +P++ + +    K
Sbjct: 75  AILDEIDSLEHGVVAGSVQVSGNLNIHLPAAFGRRHVMPLLLELTKAHPNLDLSVAFSEK 134

Query: 132 DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL 191
            I++  +  D  +R+      + LI R+L    +   A+P YLK    P  + EL +H+ 
Sbjct: 135 RINLVDEGVDLVVRIGALADDADLIARRLGRQRLVVCASPDYLKKKGTPKLVTELTEHDC 194

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
           I  G    +    F           +        +   +++   + G G++ LP +++ +
Sbjct: 195 IVGGQRSNQPAWLFR--RANGDSFTQVVHGRYCFSDGDAMLSAVLDGMGVSQLPTWLINE 252

Query: 252 N---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +     LV I++D       ++  +P +     + +   + +   A  
Sbjct: 253 HLASGALVTILDDYAGAEMPIHAVWPRSRYLKPRQRVVIDALVAAAEQ 300


>gi|148254217|ref|YP_001238802.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406390|gb|ABQ34896.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 319

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 130/288 (45%), Gaps = 8/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA++L LS +  S+ +  LE  +  +L  R +R + LTE G    
Sbjct: 7   IRVFCQVAELKSFAAAADRLGLSPAMASKHVMQLEQRLSTRLLNRTSRRVGLTEAGQVYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  +  + +++V P G L+++  +     L  G L  +   YPD+ I L 
Sbjct: 67  DQVRPMLESLDEVEAVVSKATVIPRGTLKVSAPVWFANPLFAGTLAAYRARYPDVVIDLD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +++  +  D A+R+        LI R L  + M   AAP YL     P ++ +L+
Sbjct: 127 LSGRLVNLVDEGFDLALRVSAA-PGDGLIARPLTPVLMQLVAAPSYLATAGRPKAVADLN 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ +     + +     L++ D  +       L   +   +    V G G+A+LP +
Sbjct: 186 GHAMLKYALYPLRTIT----LSSPDGEVALAFKDVLISGNETLLHHAAVAGMGMAVLPRW 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++ D+     L  ++ D +T    +   YP     + K++ F +FI  
Sbjct: 242 LMADDLASGRLETVLPDAMTIRAPLMAVYPSRKYLSAKVRTFIDFIAA 289


>gi|300694407|ref|YP_003750380.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299076444|emb|CBJ35762.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 297

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 126/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR  SFT AA QL +S S++S  I  LET +GI+L  R  R ++ TE G
Sbjct: 5   NYHDLLAFLAVARERSFTRAAAQLGVSPSALSHTIRALETRLGIRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + +++     + E    PSG +RI  T    + LL   L + L  YPD++
Sbjct: 65  ERLLQSIAPRFEEIDAELAAVGELRDTPSGTVRITATDYTIRTLLWPKLSKVLHDYPDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D    DI  +  D  +RL   +    +  R    + M     P YL+    P + 
Sbjct: 125 VEFVTDYGLTDIVAERYDIGVRLGDTLAKDMIAVRIAPDLRMVIVGTPAYLETHPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W         + R+   L  N    I    + G G+A
Sbjct: 185 QDLTAHRCINL--RLPTHGGVYAWELKKGHREIQVRVDGQLTFNGIYEICDAALSGYGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+ + + +     L  ++ED        +  YP   +++  L    + +
Sbjct: 243 YLPEDLAQPHVAAGRLKWVLEDWFPTFPGFHVYYPSRRQSSRALTLVIDAL 293


>gi|229590806|ref|YP_002872925.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
 gi|229362672|emb|CAY49582.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
          Length = 308

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +     F  AA+ L L ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELRGFAKAADSLQLPRASVTVLIKQLEAHLGVQLLQRTTRQVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++   ++   LE T+         P G L +     +G+ ++   L  F   YP 
Sbjct: 61  DGAAYYQRCVQLLTDLEETEAVFSTRRQNPRGTLSVDMPSGIGRLIVIPALPAFTARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ L+++ +++  +  DC +R    +   SL+ R L  +     A+P YL     P 
Sbjct: 121 IELEVGLNDRPVNLIREGVDCVLRGGLAL-DESLVARPLAMMDQLTLASPEYLARRGVPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           S+ +L  H ++ +  +     + F     VD  +    +S  L VNS       C  G G
Sbjct: 180 SLDDLANHQMVEY--VSSASGKRFGLEFQVDGHLHTVNLSKGLAVNSSDGYFAACEAGFG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P Y         +LV ++  V  P+  +   YP   + + +++ F +++  
Sbjct: 238 LIQAPHYHAMRQLAEGSLVEVLPQVKVPTMALSALYPPHRQLSQRVRVFVDWLVA 292


>gi|86356001|ref|YP_467893.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280103|gb|ABC89166.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 303

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 131/288 (45%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R L LTE G+ 
Sbjct: 5   EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKALGGTLLHRTTRKLALTEDGAV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++E    ++ E     SG +RIA  +  G+  L   L  FL  +PDI++ 
Sbjct: 65  FLERAGRIVREIEEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLTAHPDIRLT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D++ +D + D  D  IR   P+  S L+  KL        A+P YL     P S+ +
Sbjct: 125 LDIDDRRVDAASDGYDAIIRNG-PLADSRLVAWKLAPSRRLLCASPDYLARQGMPRSLAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H  I + +   + + D+    T +  I       L +N+   +    + G GIALLP
Sbjct: 184 LNNHRGIFYTN---RGVADWR-FQTPEGAILVRAKPALGINNGDMLRDAAIAGLGIALLP 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +I         L  I       +  +Y  +P     + KL+A  + +
Sbjct: 240 AFIAGPAIREGRLAEIDVGHRPEAEFIYMAHPAGRNPSAKLRAIADHL 287


>gi|297579905|ref|ZP_06941832.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535551|gb|EFH74385.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 301

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEDLEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P
Sbjct: 125 DVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTQCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLAEHRCLT-GSVKRWSYQHKETKQTLD----VPVDGDLQCKNGRVLVRSALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|163842336|ref|YP_001626740.1| LysR family transcriptional regulator [Brucella suis ATCC 23445]
 gi|163673059|gb|ABY37170.1| transcriptional regulator, LysR family [Brucella suis ATCC 23445]
          Length = 297

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G
Sbjct: 5   NLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI 
Sbjct: 65  ERLLAQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   
Sbjct: 125 IELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   E F W  +   + I       L   S   ++Q C+ G G+A
Sbjct: 185 QDLSDHDCINL--RLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACLTGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP        ++  LV ++ D        +  YP   ++   L A    +
Sbjct: 243 YLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEAL 293


>gi|188993301|ref|YP_001905311.1| putative transcriptional regulator, LysR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735061|emb|CAP53273.1| putative transcriptional regulator, LysR family [Xanthomonas
           campestris pv. campestris]
          Length = 310

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 130/298 (43%), Gaps = 8/298 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D +D ++ F  V  SGSFT AA+ L +S++++++ +  LE  + + L  R  R + +
Sbjct: 1   MAMDRFDAMQAFARVVESGSFTKAADTLQISRATVTQLVQQLEARLRVTLLNRTTRRVAV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G+  +     +   ++  +  L  +S  P G+LR+     L + +L   L +F   Y
Sbjct: 61  TADGAAYYERVVRLLADMDDAETSLSVASSVPRGRLRVDVPSPLARLILMPALPDFHARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDIQ+ +   ++ +D+  +  DC +R    I   SL+ R +  +    YAAP YL     
Sbjct: 121 PDIQLHMGASDRRVDLIGEQIDCVVR-GGTITDQSLVARHVGDLQAGVYAAPGYLARLGM 179

Query: 180 PLSIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           P   +EL+   H  I F       +     +      +   R   +  +   + +   + 
Sbjct: 180 PAHPRELEDTAHRTIGF-MRWGDGVPWPLVMQRDGEHVQVHRRYVVASDDGNAYLAAGLA 238

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G G+  LP Y+ +       L+ +  D       +   +P     + KL+ F +++  
Sbjct: 239 GMGVLWLPQYMARAPLSRGELLPVFADWQLDPMPLSIAFPPNRHVSAKLRVFIDWVIA 296


>gi|322515694|ref|ZP_08068667.1| LysR family transcriptional regulator [Actinobacillus ureae ATCC
           25976]
 gi|322118239|gb|EFX90531.1| LysR family transcriptional regulator [Actinobacillus ureae ATCC
           25976]
          Length = 291

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 131/298 (43%), Gaps = 17/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     +R F  V  S SF  +AEQL + +S++S+ IS LE    +KL +R  R +  T
Sbjct: 1   MN-HIQAMRAFVRVVESLSFHKSAEQLGIPRSTLSKWISDLEQHYAVKLLHRSTRTVMPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   +     +  + +  + ++ +      G LR+   +   + L    L +F   YP
Sbjct: 60  AEGQAYYLQAVRLLAEFDELEQQMHDKHRVVKGHLRVDMPMLFAEQLFIPKLPDFYQRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ L + ++ ++I+ D  DC IR+ + +   +LI RK         A+P YL     P
Sbjct: 120 QIKLTLGISDRAVNIAQDGVDCVIRIGE-VHDQTLIGRKFTDFDFVTCASPAYLTEYGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL+ H LI +         D N    +  P  E        N    I+     G G
Sbjct: 179 QTPNELENHRLIGY-------FSDINGTRPLCFPQVEMNQFHYSANGANGIVAMLKAGLG 231

Query: 241 I-----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I     AL+  ++   +  LV I+ D   PS   Y    E  + + +L+AF ++++ +
Sbjct: 232 IGQPLRALVQTWLY--SGELVEILADYPHPSLPAYLLTHERKQ-SARLRAFSDWVWEQ 286


>gi|91778246|ref|YP_553454.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690906|gb|ABE34104.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 331

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 124/293 (42%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTGAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   + T + E   +  +P+G LR+ +   +GQ+ +   +  +  LYP+
Sbjct: 61  AGERYLTRCQQILADVSTAEEEASCAHERPTGALRMHSFASIGQHYVLPAISRYRALYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+    AD A+     + +S L+   L T      A+P Y++    P 
Sbjct: 121 VTVELTLSQRMPDLFEGSADVAVIGASTLPNSDLVSLPLGTTFSILCASPAYVRAHGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L  H  +    L        +W L   +          + VN   S++     G G
Sbjct: 181 KPADLAHHECLI---LHTPAFPPHDWVLEGPNGCETMEVNGPVHVNIAESLIVAIREGMG 237

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I +LP Y       +  LVR++         +Y  YP       K + +  F+
Sbjct: 238 IGMLPLYAAISGLRDGTLVRVLPQYTAQKMNIYALYPSRKFIDAKTRTWVEFL 290


>gi|323138734|ref|ZP_08073799.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC
           49242]
 gi|322395981|gb|EFX98517.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC
           49242]
          Length = 303

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 125/295 (42%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  AA  L   +S +SR+I  LE  +G++L +R  R   +TE G
Sbjct: 3   DLNDLYFFVQVVDHGGFAPAARALGAPKSRLSRRILVLEERLGVRLIHRSTRSFAVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R    +  +    Q  +  S  +P G +R++    L    +   +  F+  +P + 
Sbjct: 63  QEYYRHCVAMLVEANAAQDAIDRSRAEPQGMVRLSCPPGLVCFKVADIVARFMARHPQVL 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   ++ +D+  +  D AIR+R  P+  S L+ R L     H  A+P        P +
Sbjct: 123 VHLESTSRRVDVIAEGFDIAIRVRFPPLDESDLVMRVLAGSPQHLVASPAIFDGNPLPRT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L     I FG   P       WL   D       +   L  + ++ +    + G GI
Sbjct: 183 PADLADLPSIDFG---PPQRPHQWWLEGPDGDSALVTQHPRLITDDFVQMRSAALQGIGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LPD++V D+     LV ++      +  ++  +P        ++ F +F+  +
Sbjct: 240 AQLPDFVVDDDLAAGALVEVLPQWRPRAGIIHAVFPSRRGLLPAVRGFLDFLAKE 294


>gi|115352291|ref|YP_774130.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282279|gb|ABI87796.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 325

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRSSPRGSVRVSVPVTLSQTMLSRILPEFLH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L  
Sbjct: 121 RYPEVKVHIRVTNRVIDLFEDSVDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L +   +    +  + +  FN +A             L     ++I +  +
Sbjct: 181 NAPPLVPDDLARFETLDTPSVDGRHV--FNLIAPDGTRHLHEHDPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAAFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|148978268|ref|ZP_01814786.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145962569|gb|EDK27846.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 314

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 131/289 (45%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ + +   FT AA+ L++S S IS+Q++ LE  VGIKL  R  R LTLTE G   
Sbjct: 8   QMVIFHALIKHEGFTSAAKSLNVSVSHISKQVALLEDSVGIKLVQRTTRSLTLTEAGEVF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   ++++ ++  Q+++       SG LR+  +   G   +   + E   LYP ++I++
Sbjct: 68  YQHCEQLFNTVKAAQMDMDSQRDDISGILRVGLSQSFGTLHIIPAIDELRQLYPQLRIEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     I ++L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMIEERLDLWITNNEDLP-EGYIAQRLADSQFVVAASPDYLIKAGTPHVPSDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + +     +  +  +W     +     +++    V+   ++    V G G+A L 
Sbjct: 187 IDHNCLIYRS---RERDYTSWAFDNGQENLSVKVAGDYSVDLAEAVRDAAVSGWGVAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
            Y+VK+      L++++ +         Y  YP       KL A   FI
Sbjct: 244 TYLVKEEFRTGKLIQVLPEWRASQLMPFYAVYPSRKNMPKKLSAVIEFI 292


>gi|157370514|ref|YP_001478503.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157322278|gb|ABV41375.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 309

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 133/296 (44%), Gaps = 4/296 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     L  F  VAR GSFT AA QL ++  ++S+ I  LET +G++LF R +R + L+
Sbjct: 1   MSSLLQLLPFFEAVARLGSFTQAASQLGVTPPAVSQNIQALETRLGVRLFNRTSRSVRLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++  +    ++E    +++     PSG LRI         L+  +L EF  LYP
Sbjct: 61  DEGHLFYQRVAPAMGQIEGAADDVRALHGHPSGLLRITLPQLAASLLVMPHLAEFQALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q++L  D+   D+ +D  D  IR+   +    +             A P YL     P
Sbjct: 121 EVQLELFTDDHFSDLVLDSFDAGIRMHAMLPKDMIAVPIDNGQRRMIIATPGYLAQYGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+ Q L +HN + +   +    E + +    +  + E   S +  N    I    + G G
Sbjct: 181 LTPQALYEHNCLRYRFPVSGKFEPWYFRQDEELLMLEFSGSQI-FNEDRLIKDAALAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I       V+   ++  LV I+ D  +     +  +P +     KL+ F +F+  K
Sbjct: 240 ITQRFSGTVQRELNSGQLVEILADYGSDFPGFFIYFPASRHMPLKLRVFVDFMREK 295


>gi|87122262|ref|ZP_01078144.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86162405|gb|EAQ63688.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 292

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + + VF  V   G FT A E L+  +S+ISR ++ LE  +G+ L  R  R  TLTE 
Sbjct: 1   MNINDMLVFAEVVAKGGFTAAGESLNKPKSNISRTVTRLEESLGVILLQRTTRKHTLTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +  +LE+    L+  +  P G LR++ ++ +GQNL+   L  F+  YP++
Sbjct: 61  GQIYYQHCLRIKEELESANHSLETLNQVPRGLLRVSASVSVGQNLIAPLLTGFMQAYPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L N+ +D   +  D  IR+ + +  S+L+   L    ++ YAAP Y  N   P S
Sbjct: 121 KLDLRLINRRVDAIEENFDILIRVGE-LADSNLVASPLCDRRLNYYAAPTYFVNRARPCS 179

Query: 183 -IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +  L   NL+    L       F    T       P     + + +  I Q  + G GI
Sbjct: 180 DLSNLSDFNLLHMKSLNAPAQWHFESDNTQKVIHFNP---SFESDDFSVIRQMLLDGYGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LLPDY+         L  ++     P   ++   P     T K++AF ++I  + 
Sbjct: 237 GLLPDYMADAYVKEGRLEPVLNAWQGPKVALHSLVPSRRGITPKVRAFLDYIKERV 292


>gi|225626872|ref|ZP_03784911.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225618529|gb|EEH15572.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
          Length = 383

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT TE G 
Sbjct: 83  LDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGR 142

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI++
Sbjct: 143 VFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEV 202

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P S +
Sbjct: 203 RLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPE 261

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            L  D+H+ +      P   E +  L T +             +    + Q+ + G GI 
Sbjct: 262 ALLSDRHHCLLL--RFPGSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGGRGII 319

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             P + VK+   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 320 NKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 375


>gi|254504319|ref|ZP_05116470.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222440390|gb|EEE47069.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 302

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 143/300 (47%), Gaps = 12/300 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D   L +F  VA  G+   A  +  LS ++ ++++  LET VG +L +R  R ++L+
Sbjct: 1   MSIDLKSLELFVRVAALGAIGKAGAEFGLSATAATQRLQALETTVGTQLLHRTTRAVSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G         +   +E    ++Q  +    G LR+A +   G+  +  ++ EFL  +P
Sbjct: 61  TDGEIFLAHAKRILGNVEEALADIQPDAQDIKGDLRVACSASFGRLHIAPHVTEFLEHHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +QL + +  +DI     D AIR+ + +  S+L  RKL        A+P YL+    P
Sbjct: 121 GVTLQLAMSDSVVDIVEQGFDMAIRIGE-LAPSTLKARKLAESPRLLVASPKYLERHSVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            ++++L  HN +   D+          L + D  + + +I+      S  +I +    G 
Sbjct: 180 TTLEDLKHHNCLAREDMRTWS------LTSADGTLHDVKINGNFSSTSAEAITEAARSGL 233

Query: 240 GIALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA    + + D   N +L+ ++++  ++P + V+   P +   + +++AF +F+  K +
Sbjct: 234 GIARKCAWEIADQLTNGSLIPVLKNHTVSPYWKVFAVRPPSRLPSARVRAFTDFLEAKFK 293


>gi|71277813|ref|YP_271575.1| LysR family substrate binding transcriptional regulator [Colwellia
           psychrerythraea 34H]
 gi|71143553|gb|AAZ24026.1| substrate-binding transcriptional regulator, LysR family [Colwellia
           psychrerythraea 34H]
          Length = 299

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 138/296 (46%), Gaps = 12/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
                 +R F V+A  GSFT AAE L  S+S IS+Q++ LE+ +G+ L  R  R   LT 
Sbjct: 4   HVSLSDIRTFVVLAEQGSFTKAAEALACSRSHISKQLAQLESSLGVSLLIRTTRTQHLTP 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
           QG   +    +  + +      + ES+   SG +RI      + + ++   + +F++L+P
Sbjct: 64  QGEAFYERCKQSLNGISHAIDRVLESADSLSGHIRINCVGGYIAEEIIATLISDFMVLHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI I+L   ++ +D+     D   R+ + +  SSLI RKL  I ++ Y +P YL    +P
Sbjct: 124 DINIELDFSSRRVDLVSGEFDFVFRMGE-LADSSLIARKLTDIKINTYVSPKYLAKNGKP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              + +  H  I         ++++ ++ + +    E  ++  L   +   ++   + G+
Sbjct: 183 NDPKGMVHHRCIA------GSLKNWTFINSDNNKKIEVIVAGNLTCKNGRVMVSSAIAGN 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  +P+   K   +   LV + +         Y  Y +      +LKAF++++  
Sbjct: 237 GIIRVPELYCKTELEQGLLVPLFDHWQVEPTPFYLVYVQDKHQPLRLKAFKDYVVE 292


>gi|56412411|ref|YP_149486.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361347|ref|YP_002140982.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126668|gb|AAV76174.1| putative LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092822|emb|CAR58248.1| putative LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 313

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 125/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 15  LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 75  ASIRPALAHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 135 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 195 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 253

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 254 DVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 303


>gi|148554102|ref|YP_001261684.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148499292|gb|ABQ67546.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 326

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 12/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD L     +A +GSF  AA +L +S S ISR +  LE  +  +LF R  R + LTE G 
Sbjct: 4   WDGLEEIVAIADTGSFVGAARRLRVSASQISRAVQRLEHRLRAELFIRTTRSVQLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +  + +      +       G++R+  +  LG+  +   ++ F+  +P + +
Sbjct: 64  TLVEQCRRIIDERDEALQLARGQGEM-QGEVRLTCSTALGERFVAPIVRRFIETHPRLSV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+ +D+  +  D AIR   P     L  R++ +      A+P YL     P  + 
Sbjct: 123 RLELTNRLVDLVSEGFDVAIRTGHP-TDHRLAARQIASRPAEVCASPAYLARAGHPRGLA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+H  +    +    +ED    + V            + NS  +++   + G GI  L
Sbjct: 182 DLDRHECLIGTSVNWHFLEDGQRRSFV-------PSGRWRCNSGNAVVDAALAGMGICQL 234

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P + V+D+     LV ++ED       V+  YP+      K++     +  + 
Sbjct: 235 PSFYVRDHIAAGRLVALLEDYRDRPEPVWAVYPQRRALLPKIQQVIAALEAEL 287


>gi|104781500|ref|YP_607998.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110487|emb|CAK15195.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 310

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++
Sbjct: 1   MDM-LHAMRTFARVVECGSFAAAANALDISSAQVSRIVAELENQLQTRLLHRTTRRLRMS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +    + ++    E    E + + + P G LR   T  LG  L+   +  +    P
Sbjct: 60  EAGERFLERSRQIMLLTEEAMDEARGAHLTPRGHLRFHCTHGLGL-LMMPLVARYNAANP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L L  ++ D   +  D  I + + +  S LI   L +IH    A+P YL     P
Sbjct: 119 EVVMELTLSQRNPDPLAEGHDVVITIGQGLPDSQLIAIPLGSIHSILCASPDYLARHGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +   D  P   ED+++    ++ +  P+ + L  N   ++++   LG G
Sbjct: 179 KRPEDLHEHVCLRTVD--PLFEEDWSFEQASEKCVIVPQDTFL-TNVADAMLKATELGMG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + LLP Y      +   L R++         +Y  YP       K++ + +F+  + 
Sbjct: 236 VGLLPYYSASQAMEEGRLCRLLAPHRLRQREIYAIYPSRHYLDAKVRTWLDFLKEQL 292


>gi|300691651|ref|YP_003752646.1| transcriptional regulator, lysR family [Ralstonia solanacearum
           PSI07]
 gi|299078711|emb|CBJ51370.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 309

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS
Sbjct: 4   FKQLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + + L   +  +    VK SG LR+      G+  +   + +FL  +PD+ I
Sbjct: 64  AFLEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  DCA+RL   +  SSL+  +L        AAP YL+    P  ++
Sbjct: 124 TLDLGDRIVDLVNEGFDCAVRLGD-LPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L  HN + FG           W+   D      ++   ++      + ++C+ G G+A 
Sbjct: 183 HLASHNCLAFG---ASANVQRGWVFQQDGKTVTVKVGGTMECTDGAVLREWCLQGYGLAW 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 240 RSWWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289


>gi|183179541|ref|ZP_02957752.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|183012952|gb|EDT88252.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
          Length = 309

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  V ++L  R  R ++LT
Sbjct: 14  MLNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLT 73

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP
Sbjct: 74  TEGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYP 133

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + LD+   D+     D  IR+ + + SSSLI R +    +  YA+  YL+N    
Sbjct: 134 KVNFDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLIGRVIAPFELGIYASQTYLENAPPI 192

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +IQ+L++H+ + +   +    +                 S    NS L +M     G G
Sbjct: 193 HTIQDLEQHDWV-YLTRLNLPNQTLTLTNQEGVQHQVKFHSKHSSNSPLGVMTMVQNGLG 251

Query: 241 IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +  +++    + +LVR+  D    S T+   YP       +++ F +++ 
Sbjct: 252 VGSIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYLV 304


>gi|54308605|ref|YP_129625.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913034|emb|CAG19823.1| Putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 300

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 132/292 (45%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  V   GSF+  AE   L+ S +S++I+ LE ++G++L YR  R LT++E G  
Sbjct: 5   DDLILFAQVVEQGSFSKVAELNSLTNSVVSKRIARLEADLGVQLLYRTTRKLTVSEAGKV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L++    V          +       +G ++++     G  LL   + EF  ++P + + 
Sbjct: 65  LYQGAKNVKQAAVEAIDAVYGYGESVTGHVKMSVPTISGDLLLADAVAEFCSMHPGLTVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L+N  +D+  D  D  IR    ++ SSLI R ++       AAP Y+ +  +P++ ++
Sbjct: 125 MSLENLFVDLVEDGYDLVIRTGY-LEDSSLIARHILDSQWVICAAPAYIASVGKPMTPED 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +        E   W    D      +++     ++  ++ +  + G G+A +
Sbjct: 184 LVTHNCLQYAYQTTGASE---WEFKGDSGNYIVKVAGNFSTDNAAALRKAALGGYGLAYV 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V  +    +L+ +    +     +Y  YP   +   K++     I  +
Sbjct: 241 PRCLVYQDFLKGDLIDVFPKRVGKKLGIYAVYPFTRQPPRKIRLLIEHIRER 292


>gi|26987997|ref|NP_743422.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|148549663|ref|YP_001269765.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|24982714|gb|AAN66886.1|AE016317_3 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
 gi|148513721|gb|ABQ80581.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
 gi|313500507|gb|ADR61873.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 315

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 131/292 (44%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA+ GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRETHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + N+  D+  +  D +I L   +  S  + ++L   +    A+P Y+       
Sbjct: 121 VTFDLTMANRVPDLLDEGYDVSIVLATELPDSGFVSQRLGITYSIVCASPAYIAQHGVAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L KH  +     +   +E + +     + +     S   VN+  ++      G G+
Sbjct: 181 KPADLLKHACLRMVSPVIP-LEKWLFDGPEGQEMVNITSSPFMVNTADAMKTAIRSGMGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP Y   +   + +LVR++ +       +Y  YP       K+K +  ++
Sbjct: 240 GVLPIYSAIEGLRDGSLVRVLPEYRLQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|293610460|ref|ZP_06692760.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826804|gb|EFF85169.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 300

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 143/300 (47%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE L  + S +SR ++ LE ++ + L  R  R L LT
Sbjct: 1   MKSTIEELVAFIAIVDTGSFVAAAEHLKQTPSGVSRSLTRLEAKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ ++L   + ELQ+S    +G +RI +      +++   + +F   YP
Sbjct: 61  QEGQQFLVKARKILNELNAAEEELQKSDQGTAGLIRIDSATPFVLHVIAPLMHKFRECYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+I+L  +++ ID+     D A R  + +  SSL  + +    +   A+P YL     P
Sbjct: 121 NIEIELNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLFIVASPEYLAIKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L++H+LI F    P  +  +      +    +  I   + +S  ++ Q  + G G
Sbjct: 180 TQPEQLEQHDLIGFTR--PAYINSWPIKVGDEYFFAQANI---KASSGETVRQLTIRGHG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ +  +     L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEIWKDIQEGRLIALFEDQIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|293393826|ref|ZP_06638133.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291423653|gb|EFE96875.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 305

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 8/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR GSFT AA QL ++Q ++S+ ISGLE  + I+L  R  R ++ T
Sbjct: 1   MKRNLNDLLYFVTVAREGSFTRAAAQLGVTQPALSQAISGLEERMQIRLLTRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L +       ++ET    L E   KP+G +RI    D+ +  L   L   L  YP
Sbjct: 61  AAGERLLQAIGHRIDEIETELDMLTELRDKPAGTVRITCGPDVLRTTLLPKLTPLLHQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCRE 179
           DI ++   ++   DI  D  D  +RL   I    +I   +   + M A A+P Y      
Sbjct: 121 DIHVEFDANHGFRDIVADRFDAGVRLGDTI-DKDMIAIPIGPKLRMAAVASPDYFSRYPL 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P + QEL +H  I     + +    + W    D      R+S  L  N+   I+   + G
Sbjct: 180 PQTPQELTRHQCI--NQRMVRSGGLYVWDFDQDGGDLNVRVSGQLTFNTSEHIVDAALAG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA LP+        +  L+R++E    P    Y  YP   + +         + ++
Sbjct: 238 LGIAFLPEEEFGTHIADGRLIRVLEPWCRPFPGYYLYYPSRKQPSPAFSLVVEALRVR 295


>gi|198245418|ref|YP_002214287.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197939934|gb|ACH77267.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326622032|gb|EGE28377.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 321

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I     I R+L T      A+P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGIDIEIRVGDDIN-ELYIARQLATNRRILCASPEYLERHGKPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   K     NW+ T  +     R++     NS   ++ + + G GI L 
Sbjct: 200 LVQHDCLMIQE---KNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITLR 256

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    +   LV ++      +  ++  Y     ++ ++K   +F+  
Sbjct: 257 SEWDVAQYIERGELVCVLPQWYQEA-NIWAVYTRRSSSSDRIKICIDFLTE 306


>gi|153829226|ref|ZP_01981893.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148875264|gb|EDL73399.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 309

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  V ++L  R  R ++LT
Sbjct: 14  MLNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLT 73

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP
Sbjct: 74  TEGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYP 133

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N    
Sbjct: 134 KVNFDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPI 192

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +IQ+L++H+ + +   +    +                 S    NS L +M     G G
Sbjct: 193 HTIQDLEQHDWV-YLTRLNLPNQTLTLTNQEGVQHQVKFHSKHSSNSPLGVMTMVQNGLG 251

Query: 241 IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +  +++    + +LVR+  D    S T+   YP       +++ F +++ 
Sbjct: 252 VGSIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYLV 304


>gi|66046279|ref|YP_236120.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256986|gb|AAY38082.1| Helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae
           B728a]
          Length = 303

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 127/300 (42%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+FD + + +F  V RSGSF  AA  L +  +++SR++  LE ++  +L  R  R L LT
Sbjct: 1   MAFDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEMQLDTRLLQRSTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +         +     +L     +P G +RIA   D         +  FL  YP
Sbjct: 61  QAGEDFYGRCVSAVDGVMEAAEQLVSGRDEPRGLVRIAAMADFFDFFSMDWVAGFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCRE 179
            +Q++ +L +   D+  D  D A R    +Q S  + R+L+   H    A+P Y+     
Sbjct: 121 RVQLEFVLSDDHADLIADRLDIAFR-GGSLQDSGYVGRQLIDEGHDTMVASPAYIAAHGL 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+  L  H  ++        +  +  L    +       S    N+  ++ +  + G 
Sbjct: 180 PDSLHSLHGHYCVSAAH--RGGVTAWRLLGPEAKMHEVHIASRFNANTAQALRKATLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIALLP  +++    +  LV ++      S  ++  YP        + AF   +  K RD
Sbjct: 238 GIALLPATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMDKLRD 297


>gi|262403701|ref|ZP_06080259.1| transcriptional regulator [Vibrio sp. RC586]
 gi|297580434|ref|ZP_06942361.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|262350205|gb|EEY99340.1| transcriptional regulator [Vibrio sp. RC586]
 gi|297536080|gb|EFH74914.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 313

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G 
Sbjct: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+  +P++ +
Sbjct: 64  IFLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIARHPNVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L ++  D+  +  D AIR  +P   S+L+   L         A+P YL      L  
Sbjct: 124 KLDLSDRLTDMYANPVDIAIRYGQP-ADSNLVAMLLCDSNERVLCASPEYLAAHPPILHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + F  ++   + +   L+                N    + +  V G GIA 
Sbjct: 183 DDLQHHNCLCF--MLADTLHNKWILSRNGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +     +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K
Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREK 293


>gi|269963662|ref|ZP_06177984.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269968367|ref|ZP_06182385.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269826994|gb|EEZ81310.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269831574|gb|EEZ85711.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 292

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 136/293 (46%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V   GSF +AA    +S + + + +S LE  +G +L +R  R  +LTE
Sbjct: 1   MDKLTSMKVFAYVVEHGSFRNAAHHFDISPTMVGKHVSFLEQSLGTQLIHRTTRKQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +   +  +Q    +P+G +++   +  G+ ++   + +FL  +PD
Sbjct: 61  AGRLYYQECHRIIEDITNAENLIQTLINRPTGTVKVNCPVTYGKKVIAPIVADFLAEFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+LDN  ID     AD  IR+ + +  SSL+ RKL   HM   A+P YL+      
Sbjct: 121 LNVELMLDNNLIDPYRSEADVIIRIGE-LVDSSLVARKLGEYHMTYCASPSYLEQHAPIQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L+ H+ + F     +  +  N  +           + L  N+   +    + GSG+
Sbjct: 180 SLDDLEHHHCLGFQYHQGESQQVVNMPSNTFGNSN----TRLTSNNGDVLKFAALKGSGV 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L P  +V+    +  LV I++        ++  Y  + + + K +   +F+ 
Sbjct: 236 LLQPKILVEQEIQSGALVEILQQHAPKPKPIHLLY-RSKQLSLKNRTLVDFVL 287


>gi|153006479|ref|YP_001380804.1| LysR family transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030052|gb|ABS27820.1| transcriptional regulator, LysR family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 298

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 140/293 (47%), Gaps = 10/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  VAR+ SF+ AA++L + +SS SR ++ LE E+G +L +R  R ++LT  
Sbjct: 1   MDLNLLTLFEAVARTSSFSAAAKELGIPKSSASRGVARLEGELGAQLLFRTTRQVSLTAT 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+   + +   ++    EL E    PSG L++   +DLG   L   L  +   YP +
Sbjct: 61  GTALYDRVTPLLRSVKAALGELPEREEAPSGTLKLTAPVDLGVLFLAEVLTRYTARYPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L  + +D+  +  D A+R    ++ SSLI R+   +    YA+P YL     P +
Sbjct: 121 SVDLHLTGRVVDLVAEGFDVALRAASKLEDSSLIVRRAAAVVFQLYASPLYLSRRGTPRT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             ELD H+ I F        +          P   PRI C   +  L +      G+GI 
Sbjct: 181 EDELDAHDWIVF----RGGPQKLRITGPRPVPAHPPRIVC---DDLLFVRDAVRSGAGIG 233

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLP ++ + +     LVRI+      + ++Y   P A     K+ AFR+ +  
Sbjct: 234 LLPTFVAEPDVLAGTLVRIVPRFERSAGSMYIVTPSAKHVPRKVTAFRDLVLE 286


>gi|66046176|ref|YP_236017.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256883|gb|AAY37979.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|330969979|gb|EGH70045.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 300

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 133/293 (45%), Gaps = 8/293 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F V ARS SFT AA +L +S+S++ + I+ LE  +G++LF+R  R ++LT  G      
Sbjct: 12  TFVVAARSNSFTEAAGRLGISKSAVGKSIARLEARLGVQLFHRSTRRISLTADGDAYFIA 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            S    ++   +  L   + +PSG+LRI   +  G+ ++   L E    YP +Q+ +   
Sbjct: 72  CSNALEEIGAAESGLAPGTREPSGRLRIDIPVAFGRRVVAPLLFEIANKYPALQLNMTFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D   +  D  +R  +   +S L+ R+L        AAP YL     P ++++L++H
Sbjct: 132 DHLVDPIEEGIDLLVRFGELKDTSGLVARRLARQRWAICAAPSYLARFGVPDTLEDLNRH 191

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           + I    +  +  +  +W    D+        S  Q+    +++   V G G+  +P  +
Sbjct: 192 HCI----VGHRRGQPLSWRVNEDQETVRYAPPSAHQIGDGEAMILAAVAGVGLCQMPRCL 247

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            KD+     LV ++         V+  +P       K++   + +      W+
Sbjct: 248 FKDDIDAGRLVEVLAGYEPEPVEVHAVWPRVSHLRPKVRYVVDELVRLCEHWQ 300


>gi|330967376|gb|EGH67636.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 297

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 124/288 (43%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F +VAR  SFT AA +L ++ S++S  +  LE  +G++L  R  R +   E G 
Sbjct: 6   LNDLQAFLLVAREQSFTKAAIKLGITPSALSHTMRALEERMGLRLLARTTRNVAPPEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +L+  L  FL  YPDIQI
Sbjct: 66  QLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGILRPMLAGFLAQYPDIQI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    AP Y +    PL  Q
Sbjct: 126 EICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGAPGYFEKHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I            + W    D R +          NS + ++   + G G+A 
Sbjct: 186 DLTQHTCINIRHSPNGSC--YAWEFEKDSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  + +   ++  L  ++ D        +  YP   + +    AF  
Sbjct: 244 VPISLAQPHIESGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFTAFVE 291


>gi|209551924|ref|YP_002283841.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537680|gb|ACI57615.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 301

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 133/289 (46%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +  F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R LTLTE G+
Sbjct: 4   IEGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKSLGGVLLHRTTRKLTLTEDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +++    ++ E     SG +RIA  +  G+  L   L  FL  +PDI++
Sbjct: 64  VFLERAGRIVREIDEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLADHPDIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +D++ +D + D  D  IR   PI  S L+  KL        A+P YL     P S+ 
Sbjct: 124 TLDIDDRRVDAASDGYDAIIRNG-PIADSRLVAWKLAPSRRLLCASPDYLARQGMPSSLD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  I + +   + + D+    T +  +       L +N+   +    + G GIALL
Sbjct: 183 DLNSHRGIFYTN---RGVADWR-FQTPEGAVVVRAQLALGINNGDMLRDAAIAGLGIALL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I +       L  I       +  +Y  +P     + KL+A  + +
Sbjct: 239 PSFIARPAIREGRLAEIDVGHQPEAEFIYMAHPAGRNPSAKLRAIADHL 287


>gi|167839524|ref|ZP_02466208.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 305

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 128/297 (43%), Gaps = 4/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V ++GSFT AA  L + ++++SR++  LE ++G++L +R  R L LT
Sbjct: 1   MAADPNDTLIFVRVVQTGSFTAAARLLRMPKTTVSRRVMTLEAQLGVQLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  +L+     + +    P G LR+      G   +   L  F   YP
Sbjct: 61  EAGGLYYAHCRNMAAQLDEAHAAVSQLQSGPRGWLRVTLPHSFGATWIAPLLAGFRRAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++++++  +  +D+  D  D A+RL   +  S L+ R+L +     YA+P YLK    P
Sbjct: 121 DVRLEILASHVPLDLVADEIDIALRLG-VLPDSDLVARRLGSFATGVYASPSYLKRHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  +T           +       R         +  +    I      G G
Sbjct: 180 EHPGELRAHRALTLHQARRAAGYAWPLRKPGGRARYFALDPVIVASDPALIHDALCAGEG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++L   + +  +     L R++ D   P+      +P       K++AF +++  + 
Sbjct: 240 LSLAMHHSMASDVEGGRLRRVLRDWSGPAQDFNALFPRGRVALPKVRAFVDYLRDRL 296


>gi|217974764|ref|YP_002359515.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217499899|gb|ACK48092.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 296

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 130/298 (43%), Gaps = 8/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR GSFT AA  L ++QS++S+ ISGLET + I+L  R  R ++ T
Sbjct: 2   MKRNLNDLLCFVTVAREGSFTRAAALLGVTQSALSQAISGLETRLEIRLLTRTTRSVSAT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L       + ++E+    L     KP+G +RI     + + LL   L   L  YP
Sbjct: 62  EAGERLLNAIGNRFDEIESELDALTAMRDKPAGTVRITCGDFVLRTLLIPKLSPLLHNYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCRE 179
           DI+++  ++    DI  D  D  IRL   I    +I   +     M A A P Y      
Sbjct: 122 DIKVEFDVNYGFRDIVADRFDAGIRLGDTI-DKDMIAIPIGPHQTMAAVATPAYFAQHPI 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P   Q+L +HN I      P     + W    D       +   L  N+   I+   +  
Sbjct: 181 PKHPQDLIEHNCINI--RFPTHGGLYVWEFEKDGKQLNVHVDGQLIFNASHHIVDAALQS 238

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GIA LP+   + +     LV+++ED        Y  YP   + +       + + L+
Sbjct: 239 NGIAYLPEAEFEPHIKTGRLVKVLEDWSLSFAGYYLYYPSRRQPSPAFTLVADALRLR 296


>gi|78063840|ref|YP_373748.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971725|gb|ABB13104.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 331

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 130/290 (44%), Gaps = 9/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L V   +A SGSF  AA +L  +Q ++SR I  LE  +  KL +R +R + +T+ G  L 
Sbjct: 12  LLVLAAIAESGSFGRAASRLGKTQPAVSRAIQRLEDRLRAKLVHRTSRHVEVTDAGHALL 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E         +   +G LR+A      + +L   L +F+  +P + ++L 
Sbjct: 72  SKVLPLLQGIEEATAGASHQTSIVNGTLRVACDAVFARLVLAPELAQFMKDHPALHVKLE 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL- 186
             N   D+  D  D AIR   P   S+LI R+L +  +   A+P YL+    P S Q+L 
Sbjct: 132 TRNDLPDLISDGFDLAIRFGPP-TVSTLICRRLYSPRVLTVASPSYLEQRGRPRSPQDLV 190

Query: 187 -DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
            D H  I   D  P     F+W    D    +  ++  L V    + +  C+ G GIA +
Sbjct: 191 DDGHECILAID--PATGRPFDWEFWRDSEKVKVAVNGKLMVTDAGTKIGACLAGYGIAQI 248

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            D  +  +     L  ++ D    +F +Y  YP       K++AF +F+ 
Sbjct: 249 IDLGIDTHLRAGTLEPVLTDWCDETFPLYVYYPSRNHVPAKVRAFIDFVV 298


>gi|206563305|ref|YP_002234068.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039345|emb|CAR55310.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 315

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 127/303 (41%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   YPD
Sbjct: 61  AGESYLRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHTQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P 
Sbjct: 121 VSIELSLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGVPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +T         E    L   +          +Q N+  S+      G GI
Sbjct: 181 RPQDLAAHACLTLCTPAFPTHEWV--LEGPEGVEQIHVAGPVQTNTAESLALAIRDGIGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----- 293
            +LP Y   D   +  LVR++   I     VY  YP       K++ +   +  +     
Sbjct: 239 GMLPLYSAIDALRDGTLVRVLPAHILQKMNVYALYPSRRFVDAKVRTWVEMLRAQVPGMI 298

Query: 294 ARD 296
           ARD
Sbjct: 299 ARD 301


>gi|171321617|ref|ZP_02910545.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171093101|gb|EDT38321.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 322

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 127/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASRDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  +          E        +  + E + +  QVN   ++      G G
Sbjct: 180 KTPDDLPNHVCLRLDTPASPASEWRLERDEDEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDLREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|168820867|ref|ZP_02832867.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205342398|gb|EDZ29162.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 307

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 69  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 189 NHRCLCHRFTRESGLYRWEFVRGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 247

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 248 DVHEDLQDGQLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297


>gi|116692634|ref|YP_838167.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116650634|gb|ABK11274.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 322

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +L+    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAELDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H  +          E     +  +  + E + +  QVN   ++      G G
Sbjct: 180 QTPDELPNHVCLRLDTPASPAGEWRLERSDGEEAVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ D    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPDYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|291086492|ref|ZP_06355950.2| HTH-type transcriptional activator AaeR [Citrobacter youngae ATCC
           29220]
 gi|291067565|gb|EFE05674.1| HTH-type transcriptional activator AaeR [Citrobacter youngae ATCC
           29220]
          Length = 304

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 129/286 (45%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVELGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+ +    +L   +  P G LRI  +  + QN+L G     L  YP + + L+
Sbjct: 61  QGCRRMLHEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTATMLKEYPGLTVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLAQFGVPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
            H+ + +        E         R I E R      N  ++++++   G+GIA +P  
Sbjct: 180 NHSWLEYSVRPDNEFELIAPEGISTRLIPEGR---FVTNDPMTLVRWLAAGAGIAYVPLM 236

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++ +     +  ++    +    VY  Y E  K   K++   N++
Sbjct: 237 WVINEINRGEVEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINYL 282


>gi|260900096|ref|ZP_05908491.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308110146|gb|EFO47686.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
          Length = 318

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R + LTE
Sbjct: 1   MDKIRSLRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V  +L   +  L+  +   SG L+I   +  G+  ++  LKEF   YP 
Sbjct: 61  AGRRYANTARFVLDELTACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I +  D+  +DI     D +IR    +Q S LI R+L  I      +  YL     P 
Sbjct: 121 ITIDIHYDDAYVDIIEQGIDVSIR-SGVVQDSQLIVRQLSPIDFIICGSQDYLTRHGVPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                + H+ + F       +               P  +   VN   S+ + C  G G+
Sbjct: 180 GPDAFNDHSWVRFRFKQTGKLLPIRMPEPDGASEYNPERN-FIVNDGESMAELCAEGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +P +I +D      LV I   +      VY  Y        +++ F +FI    +D
Sbjct: 239 TQIPHFIARDWLKAGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFITQAIQD 296


>gi|222110715|ref|YP_002552979.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221730159|gb|ACM32979.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 317

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  VA  G F  A   L + +S +SR+++ LE  +G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVAERGGFAAAGRALGIPKSRLSRRVAELEARLGVRLLQRTTRTLSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +    +  Q  + +   +P G +R+   + L Q ++   + +FL  +P ++
Sbjct: 63  EAYLRHCQAMRDSAQAAQDTVDQVQTEPRGTVRVTCPVTLAQTVVAELMPQFLQRHPQVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +++  +  D A+R+R  ++ S S++ ++L  + +   A+P  L+    P S
Sbjct: 123 LEMQVTNRVVNVVEEGVDVALRVRPTLEDSGSMVVKRLDEVRLLLVASPEQLRRQGTPTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L   + +       +       +    R            +  L++    + G+G+ 
Sbjct: 183 LRDLALLDTLAMSAADGRA--SLRLIGPEGREETVHFTPRYVADDLLTLKFAALAGTGLC 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +PDY+         LV ++     P   V+  +      +  +++F +F+
Sbjct: 241 WMPDYMCMSELQEGRLVHLLPQWTQPRSVVHAVFASRRGLSPAVRSFLDFL 291


>gi|157157918|ref|YP_001462100.1| LysR family transcriptional regulator [Escherichia coli E24377A]
 gi|193064642|ref|ZP_03045721.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194428345|ref|ZP_03060886.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|260843150|ref|YP_003220928.1| putative transcriptional regulator, LYSR-type [Escherichia coli
           O103:H2 str. 12009]
 gi|300926539|ref|ZP_07142328.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|301325776|ref|ZP_07219224.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|157079948|gb|ABV19656.1| transcriptional regulator, LysR family [Escherichia coli E24377A]
 gi|192927699|gb|EDV82314.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194413560|gb|EDX29841.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|257758297|dbj|BAI29794.1| putative transcriptional regulator, LYSR-type [Escherichia coli
           O103:H2 str. 12009]
 gi|300417456|gb|EFK00767.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300847419|gb|EFK75179.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|323159526|gb|EFZ45506.1| hypothetical protein ECE128010_4142 [Escherichia coli E128010]
          Length = 302

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + ++  ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELEAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED  T        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWSTERSGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|148560165|ref|YP_001258388.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148371422|gb|ABQ61401.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840]
          Length = 383

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 130/297 (43%), Gaps = 8/297 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT TE G 
Sbjct: 83  LDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGR 142

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI++
Sbjct: 143 VFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEV 202

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P S +
Sbjct: 203 RLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPE 261

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            L  D+H+ +      P   E +  L T +             +    + Q+ + G GI 
Sbjct: 262 ALLSDRHHCLLL--RFPGSKEYYWLLQTPEGLRKFEITGPYDSDDGDVLTQWALGGRGII 319

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             P + VK+   +  L  I++        +   YP       K++   +F+  + + 
Sbjct: 320 NKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQQ 376


>gi|144897675|emb|CAM74539.1| transcriptional regulator, LysR family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 302

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 127/298 (42%), Gaps = 9/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ A   L L +S +SR+++ LE  +G++L  R +R   LTE G
Sbjct: 3   DLNDLYYFTQVVEHGGFSAAGRALGLPKSKLSRRVAQLEDGLGVRLLQRSSRRFALTEFG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R    +  + E  +  +Q S  +P G +R++  + L Q+ +   +  FL  +P ++
Sbjct: 63  QAYYRHCRAMVIEAEAAEEAVQHSQAEPQGLIRLSCPVALAQSKVGPIIARFLADHPRVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P++ S LI + L     +   AP  L     P S
Sbjct: 123 VHLEATNRRVDVIEEGFDLAIRVRMPPLEDSGLIIKVLERHQGYLVGAPDLLDRLGRPQS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L      + G         +  +      I       L  +  +++      G GI 
Sbjct: 183 PDQLSALP--SLGMTRAGDRHSWQLVDAAGEGIEVAHQPRLVTDDMVALRHAARAGIGIV 240

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LP  +V ++     L +I+     P   ++  YP        ++ F + +   A DW
Sbjct: 241 QLPSLMVAEDLRAGVLEKILTAWTPPRGLIHAVYPSRRGLVPAVRLFLDAL---AADW 295


>gi|290509831|ref|ZP_06549202.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289779225|gb|EFD87222.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 301

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 134/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R++  V  + SF  AAE L   +S++SR +  LE  +G +L  R  R L++T 
Sbjct: 1   MDRLDAMRLYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     +  ++   +      S +P+G+ ++     L ++ +   + EFL  YPD
Sbjct: 61  EGRRYYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI  +  DC IR  +   S++L+ R L        A+P +L     P 
Sbjct: 121 LELILCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           SI +L +H  + +  L  +     +WL ++D      R+   L V+   + +Q  + G G
Sbjct: 181 SIDDLHQHRAVGY--LNHRTGRTIDWLFSLDDGDCAIRMQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+ +    +  LV  +E  +     +   YP+       ++AF ++
Sbjct: 239 LIRVASYLAQPYLQSGALVACLEQ-VASDLPLSLVYPQNRYLPPAVRAFYDW 289


>gi|167550666|ref|ZP_02344423.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|198242490|ref|YP_002214090.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937006|gb|ACH74339.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205324381|gb|EDZ12220.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 307

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++      ++S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 69  ASIRPALNHIDEAMEHARQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++  +D+  +  D  IR    +Q    +      +     A+P YL     PL  QEL 
Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELI 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         +  + ++    R    P  + L VN     +     G+G+  + + 
Sbjct: 189 NHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAGLTYVFEQ 247

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 248 DVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297


>gi|332530215|ref|ZP_08406162.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040336|gb|EGI76715.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 304

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 133/292 (45%), Gaps = 8/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F  +A  GS T AAE L+LS++ +SR +  LE+ +G +L +R  R ++L+  G 
Sbjct: 6   LSAIRSFVEIADQGSLTRAAETLNLSRAMVSRHLENLESWLGARLLHRTTRKVSLSAAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      ++       Q        +  G+LR+ T++    ++L  ++ +F  L+P I+I
Sbjct: 66  EALPRMRQMLELAADLQAVAGVRRSEAQGRLRVTTSLSFALSVLTQSVVDFQALHPRIEI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+  ++ +D+  +  D A+R+   +  S ++ R+L T      AAP YL +   P + +
Sbjct: 126 DLLTIDRSVDLVSERIDLAVRITNRLDDS-VVARRLATCRSVLCAAPSYLADRGTPAAPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  IT              L    R + +     L  +    + Q  + G+GIA+L
Sbjct: 185 DLAAHRCITHAFGTRAEYR----LGRSGRLLTQAVSGTLSGHETAVLKQAALAGAGIAML 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P Y V +      LVR++ D    +  ++  Y         LK   +F+  +
Sbjct: 241 PTYFVVEEMRRGALVRVLPDHEPEALGIHALYLSRQHQPLPLKLLVDFLAER 292


>gi|327482718|gb|AEA86028.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166]
          Length = 304

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 120/293 (40%), Gaps = 10/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +GSF+ AA  L  + S++SRQ++ LE  + ++L  R  R L L E G++ +
Sbjct: 13  MAVFVRVVEAGSFSGAARLLGSTPSAVSRQVARLEQALALRLLERTTRQLRLNEAGAEFY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++    +      +     P G +R++     G+ ++   +  FL  YP++ +QL 
Sbjct: 73  QHCRDMLDAADAAVAIGERLMRSPRGLVRLSVPKAYGKFVVGPLMPAFLQRYPEVDVQLR 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  D+  D  D  +++        L  + L  +     A+P YL+   EP   Q+L 
Sbjct: 133 ISDQSPDLIEDGFDLLVQVTDN-PPEGLAGKPLGPVRQLLCASPDYLQRHGEPQHPQDLL 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ +  G+           L   ++            N   + +   + G GI  LP +
Sbjct: 192 RHSCLHLGETAGDNRWH---LRRGEQQETVTVRGRYISNHSEARLLVALAGLGITCLPHF 248

Query: 248 IVKD---NPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                  +  L  +++      +     +  + +      K +A  +++    
Sbjct: 249 TAAQALADGQLREVLQQWRYTGSYQGAAWLLWRQNHHLPPKTRALIDYLSEAL 301


>gi|299067415|emb|CBJ38614.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 309

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS
Sbjct: 4   FKQLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + + L   +  +    VK SG LR+      G+  +   + +FL  +PD+ I
Sbjct: 64  AFLEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL+    P  ++
Sbjct: 124 TLDLADRIVDLVNEGFDCAIRLGD-LPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  HN + FG           W+          ++   ++      + ++C+ G G+A 
Sbjct: 183 QLAGHNCLAFG---ASANVQRGWVFQQGGKTVTVKVGGTMECTDGAVLREWCLQGHGLAW 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V  +     LV +++    P   ++  +P+      +++   +F+
Sbjct: 240 RSWWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLLIDFL 289


>gi|254255376|ref|ZP_04948692.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124901113|gb|EAY71863.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 305

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 132/287 (45%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  +  +GSFT A++   L+   +S  +S LE  +G +L  R  R ++LTE G   +
Sbjct: 7   MRVFTRIVETGSFTRASDTTGLTTPRVSALLSALEQHLGCRLLNRTTRRISLTEDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  V  +++  +  + ++   P G+L++     + + ++   L  FL  +P I I+L 
Sbjct: 67  ERSVAVLREIDDMEASVSQARNVPRGRLKVNLPPAMAKQVVVPALPAFLDAHPGIMIELG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ ID+  +  DC +R+   +  S +I +++ ++      +P Y +   EP ++ +L 
Sbjct: 127 VTDRQIDLVGEGVDCVVRIGA-LDDSGMIAKRIGSLTTCTCGSPGYFERFGEPQTVDDLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  +    +         W   VD      ++   + VN   + +   V G G+     
Sbjct: 186 QH--VAVSHISADTGRPRAWDYVVDGETRIVQMCGTVAVNDADNYIACGVAGIGLIKTSL 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+V+    +  L  ++ D   P+  +   YP       KLK F +++
Sbjct: 244 YLVEPYLQSGRLREVLTDFNAPARPISVLYPPNRHTPVKLKVFVDWL 290


>gi|167616239|ref|ZP_02384874.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142810|ref|ZP_05591072.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 305

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 129/297 (43%), Gaps = 4/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V ++GSFT AA  L + ++++SR++  LE ++G++L +R  R L LT
Sbjct: 1   MAADPNDTLIFVRVVQAGSFTAAARLLRMPKTTVSRRVMTLEAQLGVQLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  +     +  +L+     + +    P G LR+      G   +   L  F   YP
Sbjct: 61  EAGSLYYSHCRNMAAQLDEAHAAVSQLQSGPRGWLRVTLPYSFGTTWIAPLLAGFRQAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++++++  +  +D+  D  D A+RL   +  S L+ R+L +     YA+P YL     P
Sbjct: 121 DVRLEILASHVPLDLVADEIDIALRLG-VLADSDLVARRLGSFATGVYASPSYLMRHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  +T           +       R         +  +    I      G G
Sbjct: 180 EHPGELGAHRALTLHQARRAVGYAWPLRKPGGRAQYFALDPVIVASDPALIHDALCAGEG 239

Query: 241 IAL-LPDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + L +   +  D+    + R++ D   P+      +P     + K++AF +++  + 
Sbjct: 240 LTLAMHQSMAADHEAGRVRRVLSDWSGPAQDFNALFPRGRVASPKVRAFVDYLRDRL 296


>gi|258626653|ref|ZP_05721479.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258581066|gb|EEW05989.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
          Length = 310

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G 
Sbjct: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRNIRLTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T      L+    ++  +  + +G+L I+   DLG+NLL   ++EF+ L+P++ +
Sbjct: 64  IFLAKTQSAIATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIEEFISLHPNVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+  +  D AIR  KP   S+L+   L         A+P YL      L  
Sbjct: 124 KLELSDSLTDMYTNPVDIAIRYGKP-ADSNLVAMLLCDSNERVLCASPDYLATHPPILHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + +  ++   + +   L+                N    + +  V G GIA 
Sbjct: 183 DDLLHHNCLCY--MVSDTLHNKWILSRDGETHSVVVQGNPTCNDGEVVHRLAVKGKGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +     +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K
Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYLVCADRRLITPTIRAFQEFIRGK 293


>gi|194289863|ref|YP_002005770.1| lysr family transcription regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223698|emb|CAQ69705.1| putative TRANSCRIPTION REGULATOR; LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 338

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 132/289 (45%), Gaps = 6/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R ++LT +GS
Sbjct: 26  FKQLETFVSVASRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRKISLTFEGS 85

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + + L   +  +    VK SG LR+      G+  +   +  F+  +PD+ I
Sbjct: 86  AFLEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGYGRKHVAPLVPLFIESHPDVSI 145

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL     P + +
Sbjct: 146 TLDLSDRVVDLVNEGFDCAIRLGD-LPDSSLVSIRLAETRRVVVAAPEYLARAGRPQAPE 204

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + FG      M+         R +       ++ +    + ++C+ G+G+A  
Sbjct: 205 DLQRHNCLAFG--ASANMQRGWVFQEEGRAVTVKVGGTMECSDGAVLHEWCLQGNGLAWR 262

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V     +  LV ++++   P   ++  +P+      +++ F + +
Sbjct: 263 SWWEVGSEIASGRLVTVLDEFQAPPIGIHAVFPQRKHLPLRVRLFIDHL 311


>gi|238752628|ref|ZP_04614100.1| LysR-family regulatory protein [Yersinia rohdei ATCC 43380]
 gi|238709142|gb|EEQ01388.1| LysR-family regulatory protein [Yersinia rohdei ATCC 43380]
          Length = 310

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 127/299 (42%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  +   GSF+ AAE++ + ++++S  +  LE ++G++L  R  R + +T 
Sbjct: 1   MDQIQAMQIFVRIVELGSFSRAAEKMQIPRATVSHTLKRLEQKLGVRLLVRTTRQVNITA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  ++   ++    E          ++P GK+RI     L +N++   L +F   YP 
Sbjct: 61  EGTMYYQRCLQLLSAFEEANSLFSHQQLEPEGKVRIDMPHSLARNVVIPALNDFYQRYPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L  ++  ID+  +  DC +R   P     L+ R +        A+P YL     P 
Sbjct: 121 IKLILGANDGTIDLLREGVDCVLRAWLP-HDEQLVARNIGQQPQITCASPAYLATYGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ EL KH  + +   +        ++    +         L V+   + +   V G G+
Sbjct: 180 SLDELAKHQAVGYFSQLTGRDYPLEFMYQ-GKVESRELPGILSVSGADAYIAAGVAGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              P   +        L+ ++ D   P   ++  +P       +++   +++     D+
Sbjct: 239 IQAPTPGIHQQLLQGELIEVLADTPPPVMPLFIMFPPGRFLAPRVRVLIDWLIELFADF 297


>gi|123440729|ref|YP_001004721.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087690|emb|CAL10473.1| putative lysr-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 297

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 6/283 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L VF  VAR  SFT AA  L +SQS+IS  I GLE  +GI+L  R  RG   TE G
Sbjct: 5   DFNHLAVFITVAREKSFTRAAAHLGVSQSAISHSIRGLEERLGIRLLTRTTRGAVPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  Y  +ET    L E   KP G +RI++       +L   L + L  YPDI 
Sbjct: 65  ERLLANLTPYYDGIETELATLGELREKPGGTIRISSHDHPATTILWPKLSKLLKEYPDIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D   IDI     D  +R+   I    +  R      M    +P Y     +P + 
Sbjct: 125 LEINVDYGLIDIVAGRFDAGVRIGDQIAKDMIAMRISPDFRMIVVGSPDYFSRHPKPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  HN           +  F W         + ++   +  N+   ++   + G G+A
Sbjct: 185 HDLTSHNCANLRLSTHGGL--FAWEFEKGGQEVKVQVPGQMIFNTSPQLLTAALEGYGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
             P+ +V+       L+ ++E+        +  YP   +    
Sbjct: 243 YAPEDVVQRYIKEGRLMPVLEEWSPLLPGYHLYYPSRRQALPA 285


>gi|332163127|ref|YP_004299704.1| putative DNA-binding transcriptional regulator [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|83318556|emb|CAI77370.1| putative lysR-family transcriptional regulator [Yersinia
           enterocolitica W22703]
 gi|318603990|emb|CBY25488.1| putative transcriptional regulator LYSR-type [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667357|gb|ADZ44001.1| putative DNA-binding transcriptional regulator [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 303

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE+E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLESELNVKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMTNFSWLEYSVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLKAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGEVEVLFKKYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|254254470|ref|ZP_04947787.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124899115|gb|EAY70958.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 296

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 128/297 (43%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L +F +VAR  +   AA +L ++  ++S++++ LE  +G++L  R  R L+LT 
Sbjct: 1   MDSFSDLDLFALVARHRNLAAAARELGVTPPAVSKRLAQLEKRLGVRLMNRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G         +  +L   +  + +S  +P+G LR+  +   G+  +   +  F+  YP 
Sbjct: 61  EGELYLSNGLRILDELSELEHLVTQSRGEPTGLLRVNASFGFGRARVAPAVSAFVARYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L L ++ + +  +  D  IR  + +  + +  R L+       A+P Y+     P 
Sbjct: 121 MKILLHLTDRPVSLQDEGFDVGIRFGE-VPDARINARLLLANRRLVCASPDYVARHGAPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I   +                R         L  N    ++ + + G GI
Sbjct: 180 VPHDLTRHACIVLRENESAYGTWH--FTRGKRTETVKVDGALCSNDGGIVLHWALDGHGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +   + + D+     LV ++ D   P   ++  Y E  + + KL+ F +F+    R
Sbjct: 238 VVRSQWEIADHLASGGLVPLLSDWSLPDANIHAVYLERNQLSVKLRTFVDFLGEYLR 294


>gi|254718279|ref|ZP_05180090.1| transcriptional regulatory protein [Brucella sp. 83/13]
 gi|265983240|ref|ZP_06095975.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306838890|ref|ZP_07471718.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|264661832|gb|EEZ32093.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306406006|gb|EFM62257.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 297

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  V  +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G
Sbjct: 5   NLRDLNAFVAVTETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++ +   ++ E   +P+G +R++      Q++L   L+ FL  +PDI 
Sbjct: 65  ERLLAQVGPALAEIASGFAQIGELRERPAGTVRLSADEYAIQSVLWPALERFLAEFPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   
Sbjct: 125 IELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPGFLEKGGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   E F W  +   + I       L   S   ++Q C+ G G+A
Sbjct: 185 QDLSDHDCINL--RLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACLAGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP   V    ++  LV ++ D        +  YP   ++   L A    +
Sbjct: 243 YLPRDYVARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEAL 293


>gi|288549493|ref|ZP_06390697.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318185|gb|EFC57123.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 363

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  +  +GS + AA QL  +Q+++SR++  LET +G++L  R      LT+ G +
Sbjct: 64  ELMRTFVRIVEAGSLSAAARQLSTTQATVSRRLQSLETLLGVRLLVRTTHTTRLTDDGER 123

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    V       + E+ ++  +P G LR+      GQ+ L   L  FL  YP + ++
Sbjct: 124 CYQHARRVIDSWLALEDEVGQNEDEPVGVLRVRAPHAFGQDQLLKPLTTFLQRYPQLSVE 183

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L++K +D   D  DCAIR+   +   + +   L  +     AAP  L       S  +
Sbjct: 184 WLLNDKSVDFLGDNLDCAIRVGAEV-DPATVSVLLAEVPRCVVAAPSLLAQFPPVSSPDD 242

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L     +       + +E ++     DRP        L  +S        + G G+A++ 
Sbjct: 243 LQHLPWVAISTFYQRHVELYD--GKSDRPARIAITPRLSTDSLYVARNTALTGLGVAVVS 300

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V+++     LV ++ +    +  V+  YP +     +L+ F   I
Sbjct: 301 SWTVQEDIREGRLVHLLPEWQPAALPVHLVYPWSRYYPARLRRFLEMI 348


>gi|323494938|ref|ZP_08100030.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323310902|gb|EGA64074.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 306

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMTLFVSIVKNHGLAAAGRELGLSPATVTARLQSLEDRYGVKLLNRSTRHISLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+   E+   ++ T+  LQ    +  G L+I+   D+G+  +   L EF  LYPD
Sbjct: 61  SGAMYHQACLEIIDSVKETENLLQTGVKEVRGTLKISAPRDIGKQYISPILAEFSQLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  S+LI RKL +      A+P YL N   P+
Sbjct: 121 VIPYLYLNDNLSNLAESGLDIVIRYGE-LADSNLISRKLASSRRVLCASPEYLANKGTPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W    ++      +   +  +    I Q+ + G+G
Sbjct: 180 TPQDLSQHDCLA---MVRSNEELKTWHFQDEQQHNVITVVPKRFSDDGEVIRQWALDGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+++     LV ++   +             +   Y        +L+ F +F
Sbjct: 237 IALKSILDVQEDIKQQRLVTVLNGYMKNFNASTSMARADLNAIYLSRQYQPKRLRLFIDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LIER 300


>gi|261820152|ref|YP_003258258.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604165|gb|ACX86651.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 301

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 130/294 (44%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  +   GSF+ AAE+L L ++++S  I  LE  +G++L  R  R + +T+
Sbjct: 1   MDHIQAMRVFVRIVELGSFSRAAERLALPRATVSNTIKQLEARLGVRLLQRTTRQVQITD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +    ++  ++E       +  ++P GK+R+     L + ++   L EF   YP 
Sbjct: 61  EGRVYYERCLQLLAEIEEIDTLFTQQKLQPVGKVRVDMPHSLAREIVVPALGEFYARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L  ++  I++  +  DC +R  +     +L  R L ++     A+  YL     P 
Sbjct: 121 VTLMLSANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQVTCASADYLARYGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ EL +H ++ +  L  +         + D  I       LQVN   + +     G GI
Sbjct: 180 SLDELSRHQMVGYFSLRTEYRYPLE-FMSGDECITRMLPGVLQVNGADAYIASARAGLGI 238

Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P      + ++  LV I+ ++  P+  +Y  Y        +++ F  ++  
Sbjct: 239 IQAPRRGLSSLLESGELVEILPEMPPPAMPLYVMYTPGRFLAPRIRVFIEWLDE 292


>gi|209516442|ref|ZP_03265298.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503204|gb|EEA03204.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 331

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 130/295 (44%), Gaps = 12/295 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTAAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  + + ++   ++  + E   +  +P+G LR+ +   +GQ+ +   +  +  LYPD
Sbjct: 61  AGERYLKRSQQILADVDIAEEEASCAHERPTGALRMHSFASIGQHYVLPAISRYRALYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    AD A+     + +S LI   L T      A+P Y++    P 
Sbjct: 121 VTIELTLSQRMPDLFEGSADVAVIGASMLPNSDLISFPLGTTFSILCASPAYVRAHGAPK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
              +L  H  +          E      T+D P G   +     + VN   S++     G
Sbjct: 181 KPADLAHHECLILHTPAFPPHEW-----TLDGPNGSELMEVDGPVHVNIAESLIVAIREG 235

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI ++P Y       +  LVR++ D      TVY  YP       K + +  F+
Sbjct: 236 MGIGMVPLYAAISGLRDGTLVRVLPDYTLQRTTVYALYPSRKFIDAKTRTWVEFL 290


>gi|153824363|ref|ZP_01977030.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|149741917|gb|EDM55946.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
          Length = 313

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G 
Sbjct: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ +
Sbjct: 64  IFLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L ++  D+  +  D AIR  +P   S+L+   L         A+P YL      L  
Sbjct: 124 KLDLSDRLTDMYANPVDIAIRYGQP-ADSNLVAMLLCDSNERVLCASPEYLAAHPPILHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + F  ++   + +   L+                N    + +  V G GIA 
Sbjct: 183 DDLQHHNCLCF--MLADTLHNKWILSRNGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +     +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K
Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYLVCADRRLITPTIRAFQEFIREK 293


>gi|157161263|ref|YP_001458581.1| LysR family transcriptional regulator [Escherichia coli HS]
 gi|170019856|ref|YP_001724810.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739]
 gi|188492998|ref|ZP_03000268.1| transcriptional regulator, LysR family [Escherichia coli 53638]
 gi|300917631|ref|ZP_07134282.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300951404|ref|ZP_07165246.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300956701|ref|ZP_07168975.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|301645691|ref|ZP_07245618.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|312969835|ref|ZP_07784018.1| uncharacterized HTH-type transcriptional regulator yeaT
           [Escherichia coli 1827-70]
 gi|157066943|gb|ABV06198.1| transcriptional regulator, LysR family [Escherichia coli HS]
 gi|169754784|gb|ACA77483.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|188488197|gb|EDU63300.1| transcriptional regulator, LysR family [Escherichia coli 53638]
 gi|300316501|gb|EFJ66285.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300415148|gb|EFJ98458.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300449394|gb|EFK13014.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|301076063|gb|EFK90869.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|309702021|emb|CBJ01335.1| LysR-family transcriptional regulator [Escherichia coli ETEC
           H10407]
 gi|310338120|gb|EFQ03209.1| uncharacterized HTH-type transcriptional regulator yeaT
           [Escherichia coli 1827-70]
 gi|332343524|gb|AEE56858.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 307

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 135/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   + P        L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLVIKERDHPFGVW--QLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|261400530|ref|ZP_05986655.1| transcriptional regulator, LysR family [Neisseria lactamica ATCC
           23970]
 gi|269209792|gb|EEZ76247.1| transcriptional regulator, LysR family [Neisseria lactamica ATCC
           23970]
          Length = 303

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 143/289 (49%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    +L+   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSLICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +       + ++      +  +         ++ ++ L + +    G+ I   P +
Sbjct: 186 GLPAVLPTYTNQQKLDITR--KSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPFW 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            V+ +    +LVR++ +  TP+  +   Y +    + K+++F +F+  K
Sbjct: 244 AVEHDLRCGSLVRLLPEYATPTVRLNAVYADRAFLSAKVRSFIDFLNEK 292


>gi|123440928|ref|YP_001004919.1| LysR family regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087889|emb|CAL10677.1| LysR-family regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 362

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 126/294 (42%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T 
Sbjct: 55  MDQIQAMQIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITA 114

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++    E          ++P GK+RI     L +N++   L++F   YP 
Sbjct: 115 EGTLYYHRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALRDFYQRYPH 174

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L  ++  ID+  +  DC +R   P     L  R +        A+P YL+    P+
Sbjct: 175 ITLILGANDSTIDLLREGVDCVLRAWLP-HDEQLAARNIGQQPQITCASPAYLEKYGIPM 233

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H  + +   +        ++    +       S L V+   + +   + G G+
Sbjct: 234 SLDDLAGHQSVGYFSQLNHRDYPLEFVCQ-GKIENRVLPSILSVSGADAYIAAGMAGLGL 292

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P   ++       L+ ++  +  P   ++  YP       +++   +++  
Sbjct: 293 IQVPTAGIQGQLAQGELIEVLSHIPPPVMPLFIMYPPGRFLAPRVRVLIDWLIE 346


>gi|89073786|ref|ZP_01160300.1| transcriptional regulator [Photobacterium sp. SKA34]
 gi|89050561|gb|EAR56053.1| transcriptional regulator [Photobacterium sp. SKA34]
          Length = 304

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 136/304 (44%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LTE
Sbjct: 1   MDKFSDMTLFISIVKNQGMAAAGRELGLSPATVTARLQALEDRYGVKLLNRSTRHISLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+   E+ H ++ T+  LQ  S +  G L+I+   D+G+  +   +  F   YPD
Sbjct: 61  SGALYHQACLEIIHSVKETENLLQTGSQEVRGTLKISAPRDIGKQYISPIISAFCERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L LD+K  +++    D  IR  + +  S+LI RKL        A P YL N   P+
Sbjct: 121 VVPYLYLDDKLTNLAESGIDIVIRYGE-LADSNLISRKLAPSRRVLCATPEYLANKGTPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L  H+ +    +I    E   W  T D       +   +  +    I Q+ + G+G
Sbjct: 180 TPQDLADHHCLA---MIRSNEELKTWHFTDDNQQTVITLVPKRFSDDGEVIRQWALDGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     ++ +     LV +++  +        + S  +   Y        +L+ F  F
Sbjct: 237 IALKSILDIQHDIQEQRLVTVLDGYMKNFNASTSSASADLNVIYQSRQYQPKRLRLFIEF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LLER 300


>gi|193070762|ref|ZP_03051697.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|256020972|ref|ZP_05434837.1| putative DNA-binding transcriptional regulator [Shigella sp. D9]
 gi|293433197|ref|ZP_06661625.1| HTH-type transcriptional regulator ycaN [Escherichia coli B088]
 gi|300816997|ref|ZP_07097216.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300902943|ref|ZP_07120887.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|301302493|ref|ZP_07208624.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|332282195|ref|ZP_08394608.1| transcriptional regulator [Shigella sp. D9]
 gi|192955955|gb|EDV86423.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|291324016|gb|EFE63438.1| HTH-type transcriptional regulator ycaN [Escherichia coli B088]
 gi|300405004|gb|EFJ88542.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300530349|gb|EFK51411.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300842332|gb|EFK70092.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|315257940|gb|EFU37908.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|323175002|gb|EFZ60617.1| hypothetical protein ECLT68_0559 [Escherichia coli LT-68]
 gi|323185394|gb|EFZ70758.1| hypothetical protein ECOK1357_1347 [Escherichia coli 1357]
 gi|332104547|gb|EGJ07893.1| transcriptional regulator [Shigella sp. D9]
          Length = 302

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + ++  ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELEAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED  T        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|260768981|ref|ZP_05877915.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|260617011|gb|EEX42196.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
          Length = 315

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 121/291 (41%), Gaps = 7/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  SFT AA  L +S S +S+Q++ LE  VGIKL  R  R  T+TE G   
Sbjct: 8   QMVMFAALIKHQSFTAAARNLGVSVSHVSKQLAQLEASVGIKLVQRTTRSFTITEAGESF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R   ++   +     EL     + SG LR+  +   G   +   L+E    YP++Q+++
Sbjct: 68  YRHCEQLVALVSDADNELVNQREEVSGLLRLGLSQSFGSLHVLPALEELRQQYPNLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  ID+  +  D  I   + +     I ++L        A+P YL +   P    +L
Sbjct: 128 HLFDYKIDMLSEGLDLWITSNEHLP-EGYIAQRLAECKFVVAASPDYLLHHSTPQLPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN + +                 ++ +         V+   ++    V G GIA L  
Sbjct: 187 LDHNCLIYRSWDRDYTRWA--FRNREQQLSIKVSGNYSVDLAEAVRDAAVSGWGIAYLAT 244

Query: 247 YIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y+++D      L++++ D         Y  YP       K  A   F+  K
Sbjct: 245 YLIRDEFRTGKLIQLLPDWQASQNMPFYAVYPSRQHLPKKTSAVIEFLKQK 295


>gi|194365455|ref|YP_002028065.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348259|gb|ACF51382.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 305

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 134/304 (44%), Gaps = 11/304 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D L    VF  V   GSFT  A  L  + S +SR ++ LE  +G +L  R  R +
Sbjct: 1   MSRKFDYLGDVEVFLAVVEHGSFTAGAVALSTTPSVLSRAVTRLEARLGRQLLQRTTRRV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G          +  L+  + ++       +G++R++     G   L   L  F  
Sbjct: 61  GLTDAGRLYLEQVRTAFGLLDDAERDVLAQDGALAGRVRLSVPTTYGHYRLPPVLARFAQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP +Q++L + N+++D+  +  D AIRL + +  S L+ RKL    +   A P YL+  
Sbjct: 121 LYPQVQVELNITNRNVDLVAEGFDLAIRLGQ-LPDSGLVARKLEDAPLLLVATPDYLQRR 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYC 235
             P ++ +L +H  + F  ++P+      W+   D    +  PR S    +  L ++   
Sbjct: 180 GSPQTLDDLQQHLCLPF--VMPRTGRLAPWIFRDDGRDVDWLPRSSIETSDDVLGVVSLA 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             G GI    ++IV++      LV +++ +   S      Y    + +   +A    +  
Sbjct: 238 EQGIGICQSYEFIVRERLQRGQLVEVLQQLRGRSRPFSVIYAPHRRQSAAARAMIELLVG 297

Query: 293 KARD 296
            A +
Sbjct: 298 NAAE 301


>gi|229505356|ref|ZP_04394866.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229510974|ref|ZP_04400453.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229515431|ref|ZP_04404890.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
 gi|229518095|ref|ZP_04407539.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229525658|ref|ZP_04415063.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229529860|ref|ZP_04419250.1| hypothetical protein VCG_002961 [Vibrio cholerae 12129(1)]
 gi|229608375|ref|YP_002879023.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|5565924|gb|AAD45271.1| AphB [Vibrio cholerae]
 gi|229333634|gb|EEN99120.1| hypothetical protein VCG_002961 [Vibrio cholerae 12129(1)]
 gi|229339239|gb|EEO04256.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229344810|gb|EEO09784.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229347200|gb|EEO12160.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
 gi|229350939|gb|EEO15880.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229357579|gb|EEO22496.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229371030|gb|ACQ61453.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
          Length = 291

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 143/292 (48%), Gaps = 9/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  +++  +  ++I+R+I  LE  + ++L  RHAR LTLTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++  S +  +L +   E+ +     SG++RI+   +L + ++      F+  YPDI
Sbjct: 61  GERFYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L++ N+  D+     D   R+  P + SSLI RK+  +     A+P YL +  +P  
Sbjct: 121 HIELMMSNQADDLDPTEWDVIFRVG-PQRDSSLIARKIGEVKDILVASPQYLSSHPQPTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL +H L+         +  +    +    +        Q ++   +   C  G GI 
Sbjct: 180 AEELHQHQLL-----KGYPLLKWQLTNSQGETVVNSDRGRFQASALNVVRSACSEGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L+PD +++   ++ +LV+++ D  +    +Y  Y        K++ F +F+ 
Sbjct: 235 LMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 286


>gi|307129111|ref|YP_003881127.1| LysR family transcriptional regulator [Dickeya dadantii 3937]
 gi|306526640|gb|ADM96570.1| Transcriptional regulator, LysR family [Dickeya dadantii 3937]
          Length = 298

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 137/297 (46%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++++ F VV   GS T AA QL  + S ISR +  LE+++G+ L +R  R L L+
Sbjct: 1   MKVTLEEMQAFVVVVDCGSVTAAAGQLGQTTSGISRALGRLESKLGMTLLHRTTRRLALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   +V   +E  + ++     KPSG+LRI       Q+++   + EF   YP
Sbjct: 61  EEGQIFLQHARDVLQTVELAEEQIALRRRKPSGRLRINAAASFMQHVIVPLIPEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+   + D AIR+ + ++ SS+  R L    +   A+P YL     P
Sbjct: 121 CISLELNTDDVIIDLLEQHTDVAIRIGE-LRDSSIHARPLGATRLRILASPEYLSRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L ++ L  H L+ F       +           PI    +  +  ++   + Q  + G G
Sbjct: 180 LGVEALAGHTLLGFTQSESLNLWPLRSAFGDYYPI----VPTIAASNGEMLRQLALRGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  L D++ +D+     LV+I+ D        V   +        ++ +F +F+  K
Sbjct: 236 IVRLSDFMTRDDVAAGRLVQILADDTLEMRLPVNAVFYRNTALASRIVSFLDFLSEK 292


>gi|269961862|ref|ZP_06176219.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833440|gb|EEZ87542.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 297

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 64/302 (21%), Positives = 137/302 (45%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + VF  +   GS + AAE L +S++ ++R +  LE  +  +L +R  R L+LT 
Sbjct: 1   MDRLEAMNVFVTIVERGSLSAAAEHLGMSRTKVTRYLGELEKWMDTRLLHRTTRSLSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +   +  E+    E+      ++ V   G+LRI  +  +  + L   +  F+  +PD
Sbjct: 61  AGKETLEIARELLALEESLSGIRNQNRVNLKGQLRITASYSIVSSFLIDAITSFIEQWPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I ++  ++ +++     D AIR+   + + +++ ++L        A+P Y++    PL
Sbjct: 121 VAIDIVSTDETVNLVESRIDLAIRITNELPA-NVVAKQLGECRSVICASPKYIEQKGAPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L  HN ++F              +  +          +  N+   ++   + G+GI
Sbjct: 180 NAQDLGHHNCLSFSYFGRSEW----GFSGPNGDESVSIKGNISANTPEVLLAAALNGNGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKAR 295
           +L P   VKD      L++++ +    +  V+  Y    + T  L+AF + +     +++
Sbjct: 236 SLQPFPTVKDLITEGKLIQLLPEWHPKTLGVHAIYGTRKQVTPLLRAFIDHLSTSMSESK 295

Query: 296 DW 297
            W
Sbjct: 296 RW 297


>gi|262404311|ref|ZP_06080866.1| transcriptional regulator LysR family [Vibrio sp. RC586]
 gi|262349343|gb|EEY98481.1| transcriptional regulator LysR family [Vibrio sp. RC586]
          Length = 315

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 128/289 (44%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  
Sbjct: 8   QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   SE+   +   Q E+++   + +G LR+  +   G   +   L++    YPD+++++
Sbjct: 68  YSHCSELLTIVTNAQSEMEDQRDEVAGLLRLGLSQSFGTLHVLPALEQLRQQYPDLRVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++        A+  YL     P    EL
Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASTEYLLRHGTPTQPVEL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + +        +   W  + D      ++S    V+   ++    V G GIA L 
Sbjct: 187 MDHNCLIYRS---WERDYTRWSFSRDGQSQTVKVSGNYSVDLAEAVRDAAVAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
            Y+++D      L++++ +         Y  YP       K  A  +FI
Sbjct: 244 TYLLRDEFRTGQLIQLLPEWCADQQMPFYAVYPSRQHMPKKTSAVIDFI 292


>gi|123443978|ref|YP_001007948.1| putative DNA-binding transcriptional regulator [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090939|emb|CAL13821.1| probable lysR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 303

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE+E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLESELNVKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMTNFSWLEYSVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLKAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGEVEVLFKKYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|290473336|ref|YP_003466202.1| transcriptional regulator, LysR family [Xenorhabdus bovienii
           SS-2004]
 gi|289172635|emb|CBJ79404.1| Transcriptional regulator, LysR family [Xenorhabdus bovienii
           SS-2004]
          Length = 296

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 144/298 (48%), Gaps = 7/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   ++++ F  V   GSFT AAE+L +S++  S  +  LE  + I L  R++RG+ LT
Sbjct: 2   MNNQLNRIQTFIAVVDCGSFTRAAERLLISKAMTSIHVKRLEESLNIPLLIRNSRGVALT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L+   SE++  ++++   + E  +  SG L I +TI+ G   L   + EF  ++P
Sbjct: 62  EAGQFLYNEFSEIFINIQSSLDNVAEQYLSLSGTLHITSTIEFGDRFLLPLIGEFCKIHP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +     +   D+  D  D AIRL   ++ SSL  RK+    ++  A+P +L+  +  
Sbjct: 122 QLNVSYDAGSALNDLISDRLDLAIRLG-VLRDSSLKSRKIADFKIYMVASPDWLEKNKL- 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L   + I   +L  +    +    +    I     +    NS  SI    + G G
Sbjct: 180 ETVNDLKDVDWIANSNL--QTPTHWELSHSTLPSIDIRAKARFNANSSTSIKTMAIAGFG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + +LP+++++    + NLVR+  +   P   V   YP   +   K + F +++  K +
Sbjct: 238 VTVLPEWMIETELQSGNLVRLFPEYSLPKQPVTIVYPNGHQIQRKCRVFIDYLIDKLK 295


>gi|261339335|ref|ZP_05967193.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318132|gb|EFC57070.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 301

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 120/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R  T+TE G
Sbjct: 3   DLNDLAWFVKVVEHGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFTVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +  + E  +  +     +P G +RI   + L    +   L  FL  YP I 
Sbjct: 63  QTFYQHCKAMLVEAEAAEEAVAALQAEPRGIVRITCPVTLLHVHVGPMLARFLARYPGIN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D   +  D AIR+R +P   S L+ R L        A    ++    PL+
Sbjct: 123 LQLEATNRRVDPVAEGIDVAIRVRPRPFDDSDLVLRVLADRGHCLVAGRQLVERLGAPLT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L     ++ G    K +  ++                      L++ +  + G G+ 
Sbjct: 183 PSALSDWPGLSMG--AGKQVHKWDLCGPQGAKAEIHFTPRFITTDMLALREAAMAGVGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +VK+   +  LVR++ED       ++  YP        ++   +F+  +
Sbjct: 241 QLPILMVKEQLASGELVRVLEDWEPRREVIHAVYPSRRGLLPSVRTLVDFLTEE 294


>gi|167567601|ref|ZP_02360517.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167569115|ref|ZP_02361989.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 320

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 127/297 (42%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ I  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFIQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E       P G++RI + +  G+  L   L EF   YP+I +
Sbjct: 67  AFYERCVRILEDIADAERE-ATRGASPQGRVRINSHVPFGKRHLMPLLPEFQRRYPEITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D+  D +D AIR   P   S L+ RKL    M    +P Y +    P +  
Sbjct: 126 DIVLSDAVVDLLDDRSDIAIRSGAP-DDSRLVMRKLGGSRMVVVGSPAYFERWGVPETPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+H+ I                   +     P    L +    SI +  V G G+A L
Sbjct: 185 DLDRHHCIGLSGNTKTWP-----FVVAEGRRLLPSGGNLLLGDGESIREAAVAGLGLARL 239

Query: 245 PDYIVKDNP---NLVRIMEDVIT-PSFTVYFCY--PEALKNTGKLKAFRNFIFLKAR 295
               V ++     LV ++E         +   +  P   +   +++   +F+  + R
Sbjct: 240 ARCHVAEDIDAERLVPVLEAFNPGDEEEISAVFVGPSE-QLPARVRVLLDFLKERIR 295


>gi|254297865|ref|ZP_04965318.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157807869|gb|EDO85039.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 307

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 128/290 (44%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE G +  
Sbjct: 1   MRVFVRVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP++Q+ L 
Sbjct: 61  QRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRQRYPEVQVDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++    P   Q+L 
Sbjct: 121 LAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEQHGAPQRPQDLA 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +          +++  +               +VN   ++      G GI +LP Y
Sbjct: 181 GHVCLGMV-APGLYWDEWKLVGPQGEQSVTLAPPPFRVNVAEALATGIREGMGIGVLPLY 239

Query: 248 IV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                  N + VR+M +  +    +Y  Y        K++ + +F+  + 
Sbjct: 240 SAIAGLRNGDFVRVMPEYRSHVMNIYALYASRQYLDAKIRTWVDFLRDEL 289


>gi|319784669|ref|YP_004144145.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170557|gb|ADV14095.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 299

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     +RVF  V   GS + AA  L++S +++SR I  LE ++G++L  R  R L+LT
Sbjct: 1   MNL-LTAMRVFDRVCLLGSLSAAARDLNMSTTAVSRTIKELEDDLGVRLINRTTRRLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +   +   Q   +    +  G +R++ +  LG   +   + +FL   P
Sbjct: 60  EAGRDYAPRARILLDDISELQDSTRGLHKETRGLIRVSCSNVLGHTRITKLVPKFLEENP 119

Query: 121 DIQIQLILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
              I+  L  +  + I  +  D AIR       S+LI R+L  +  +  A P Y      
Sbjct: 120 LTTIEFDLTARYVVGIVEEGYDVAIRFGGQ-ADSALIARRLGEVRNYVCATPDYWDTNGR 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P+   EL  H+ +            F      D P        +  NS  +  Q    G 
Sbjct: 179 PVHPDELASHSCVLSNFAKRLGTWPF---IGPDGPFDAAVGGRISTNSVEAAYQMTTAGF 235

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  LP  +V     +  L   +++    S  +Y  YP       K++AF +F+  + 
Sbjct: 236 GIGNLPSLLVDAAISDGRLEVQLDEFRPGSSPIYALYPHRTYIAAKVRAFVDFLIREL 293


>gi|319793821|ref|YP_004155461.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596284|gb|ADU37350.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 320

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 139/291 (47%), Gaps = 10/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  SG F+ AA  L ++ S+IS+ ++ LE  +GI+L +R  R L LT +G   
Sbjct: 11  EMEAFVQVVESGGFSAAARLLDMTPSAISKLVARLELRLGIQLVHRSTRKLQLTPEGLHF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  ++ V   ++  +     +   P G++ I  ++  G + L   +   L ++P+I + +
Sbjct: 71  YERSTRVLADMDEAER-CAAAGAAPRGRVSINASVSFGHHKLVPLVPRLLEMHPEITLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  + AD AIR  + + +S L+ R+L        A+P YLK    P + QEL
Sbjct: 130 ALTDRIVDLMDERADIAIRWGQ-LPASDLVARRLGETSQAIVASPGYLKKYGTPHTPQEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + HN + +     +   D+  L    R +  P    ++     ++ Q  + G+G A L  
Sbjct: 189 EAHNRLGWS--YRRNTPDWP-LRVDGRTVTMPVAGPVRAGDGETLRQLAIAGAGAARLSL 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFL 292
           Y ++ +     LV ++E+        ++  Y  +A     +++A  +F+  
Sbjct: 246 YHIQHDIDAGRLVPLLEEFNPGEIEPIHAVYIGKAGTLPARVRAVLDFLVA 296


>gi|317401128|gb|EFV81781.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 293

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 141/298 (47%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ + + LR+F  V  +GS + AAE L  + S +SR +S LE ++G+ L  R  R + LT
Sbjct: 1   MALNSEALRLFLGVVDAGSMSAAAEMLGQTASGVSRGLSRLEEDLGVTLLNRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+       ++   LE  +  ++  + +P+G+LR+  ++ +  + +  ++ +F   YP
Sbjct: 61  AEGAHFLHKARQIVQSLEEAEECMRIVNQQPAGRLRVDASVPVMLHCVVPHVADFRREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  +++ +D+     D A+R+  P+  S+L  R +        A+P YL     P
Sbjct: 121 AISLELTSNDRIVDLIEHRTDVALRMG-PLNDSTLHARPMRPRPRWLMASPEYLARRGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L  H L+ F       +    W               L  +S  +     + G G
Sbjct: 180 RTVEDLAGHELLGFTQPESLNV----WPLRHAGGSTYLATPTLATSSGETQRHLALRGVG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++ +D+     LVRIMED+ T     ++  Y    + + ++  F +F   + 
Sbjct: 236 IACLSDFVSRDDLREGRLVRIMEDLHTDYLQPMHAVYYRNTQLSRRIACFLDFFASRL 293


>gi|218700582|ref|YP_002408211.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|218370568|emb|CAR18375.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
          Length = 302

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L L+ S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLTSSAISHNIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + +   ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELKIAV--AGNIILDDVDAELDAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED IT        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWITERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|325275865|ref|ZP_08141722.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas sp.
           TJI-51]
 gi|324099006|gb|EGB96995.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas sp.
           TJI-51]
          Length = 311

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 131/294 (44%), Gaps = 4/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  VA  GSFT AAE+L+L+ S+IS+ ++ LE  +G +LF R  R L+L+E G 
Sbjct: 7   LKGIDVFVAVADLGSFTAAAERLNLTSSAISKSVARLEARLGARLFNRTTRSLSLSEAGV 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  + V   LE  +  L  S  +P GK+RI      G+  +   + +F+ L+P +Q 
Sbjct: 67  VFYRTCTSVLADLEEVEHTLAASDDQPHGKVRIELPASYGRLHVLPLILDFIRLHPLLQP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +   ++ +D   +  D  +R+  P     +L  +      +   AAP YL+    P   
Sbjct: 127 HVSFSDRFVDPVHEGIDIVVRIGGPDAWPAALGHQYFGAQRLMFCAAPGYLEKHGVPQHE 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L+ H+ + +G         +                 + V      +   + G GI  
Sbjct: 187 RDLEHHHCVGYGHTDGLVSPWYFKGRHPGEMERRTVQPRIAVGDGEGEVAAVLAGHGIGQ 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP ++ +   D   LV ++  + T    +   + ++ +   K++A  +++  + 
Sbjct: 247 LPTWLTQQYLDQGRLVEVLPALATDGLPMNLVWLKSREGLPKVRALLDYLLPRL 300


>gi|237801606|ref|ZP_04590067.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024466|gb|EGI04522.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 297

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              ++ F  +  +GSF+ AAE+L+ + S+ISR +  LE  +G +L  R  R L++T  G 
Sbjct: 4   LHAIKAFRSLVEAGSFSLAAERLNTTHSTISRHLQQLEHVLGAQLVNRTTRHLSVTSAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++  +L+   + +  +  K  G LRI+  + +G   L   L  F   YP+I++
Sbjct: 64  HYYLACIDILDRLDQAALSVSCAGQKLGGSLRISVPMVIGTLELASWLPAFQKRYPEIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +D+     D A+R+ + +  ++L  R L    +   A+P Y+     P +  
Sbjct: 124 ELSCSDRFVDLVAGGFDLALRIAESLTDTTLAARLLAVSEVRLVASPGYIARHGLPRTAN 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+ F         ++   +   +P        L+ +S  ++    + GSGIA  
Sbjct: 184 DLQHHQLLGFS----GSHAEWLLTSATGQPERIRPAGMLRSDSIAALHAAALAGSGIAAF 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D  V+       LV I+ D        +  YP+    +  ++AF +F+    R
Sbjct: 240 TDITVRQPLAQGQLVTILPDWSLGQRRYHALYPQTRYVSPWVRAFIDFMVEHYR 293


>gi|90407716|ref|ZP_01215895.1| hypothetical transcriptional regulator [Psychromonas sp. CNPT3]
 gi|90311185|gb|EAS39291.1| hypothetical transcriptional regulator [Psychromonas sp. CNPT3]
          Length = 308

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 147/300 (49%), Gaps = 15/300 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M FD + L +F  V    SFT AA  L +++S++SR+I+ LE  +G +L  R  R LTLT
Sbjct: 1   MGFDLNTLTIFTQVVNCNSFTKAAINLGITKSTVSRKIAELEDHLGARLLTRSTRNLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++ TS++  +++  +I++ ES     G + I   ++   +L++  + +F+ ++P
Sbjct: 61  KEGINFYQSTSQILDRIDQAEIDVMESHDFIRGTMSIVIPVEAENSLMRECITDFMKIHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L + N+ +DI  +  D  I+    ++ SSLI R          A+P YL+   EP
Sbjct: 121 ELIIKLEISNRKVDIISEGVDFIIQAGN-VEDSSLIARVFYHATRILIASPEYLERNNEP 179

Query: 181 LSIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++++L   H  I    +                 +        +VN+  + +  CV G 
Sbjct: 180 MTLKDLKAPHQQIVLSTMKHGT----------GGHVLSGLPYRFKVNTLSASLNACVKGL 229

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA + + + +D      L  ++ ++      + F YPE    T +L+ F +F   +  +
Sbjct: 230 GIAYMSELLCRDLIKEGKLKHLLPNIYAEKVPINFIYPERKLMTKRLRKFLDFTLQRFEN 289


>gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074714|gb|ADJ64113.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 304

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 128/291 (43%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F   A  GSFT AAE L L+ +S+SR IS LE+ +G++LF R  R + LT +G    
Sbjct: 12  IELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQIRLTREGELYR 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   ++   +  L      PSG LRI+         L   L  F   YP I+++L 
Sbjct: 72  DQCQQALEQIADAERILTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQQAYPQIEVELS 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+ +D   +  D AIRL  P   S LI   L    +  +AAP YL    +P SI EL+
Sbjct: 132 IANRVVDFVEEGYDLAIRLGVP-PDSRLIAHTLEEATLGLFAAPAYLARRGQPRSIAELE 190

Query: 188 KHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +H+ I F     G  +P   +D              RI     +  L  + + + G G+ 
Sbjct: 191 QHDCIQFILPSSGRAMPWIFKDAQGRDMDFHFKSRQRIH----DDVLGCVNWAIAGGGLF 246

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  +I         LV +++     +      YP     + +++AF  F+
Sbjct: 247 QIYHFIADAAVRRGELVEVLQQAGYRTRRFSILYPHNRHLSARVRAFVEFL 297


>gi|307728942|ref|YP_003906166.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583477|gb|ADN56875.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 305

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 144/299 (48%), Gaps = 8/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE
Sbjct: 1   MDRFEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  ++   +  L      P G +R+ T+  L + LL   L +F   YP+
Sbjct: 61  DGALFYDRCVRILAEVADAESSLSNKRENPVGTIRVDTSGTLARALLLPALDDFYRRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L +++ID+  D  DC IR+  P + SSL+ R++    +   A+P YL+    P 
Sbjct: 121 IDVRLGLADRNIDLIQDAVDCVIRMGTP-EESSLVARRIGHARIVTCASPAYLEKYGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ +L +H  + +  +  +  + F +   V+  I +  + S L VN     ++   LG G
Sbjct: 180 TLDQLSEHRAVNY--VSARTGKTFPFEYEVNGEIAKVTMKSVLAVNDGSVYIRAGALGHG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I     ++V    +   L  I+ D  +P   +   Y      + +L+AF  ++    R+
Sbjct: 238 IIQPSRFMVAHLIERGVLKEILTDYTSPGTPLSILYAHRRNLSSRLRAFTEWVTELVRN 296


>gi|121594680|ref|YP_986576.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120606760|gb|ABM42500.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 317

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  VA  G F  A   L + +S +SR+++ LE  +G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVAERGGFAAAGRALGIPKSRLSRRVAELEARLGVRLLQRTTRTLSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +    +  Q  + +   +P G +R+   + L Q ++   + +FL  +P ++
Sbjct: 63  EAYLRHCQAMLDSAQAAQDTVDQVQTEPRGTVRVTCPVTLAQTVVAELMPQFLQRHPQVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +++  +  D A+R+R  ++ S S++ ++L  + +   A+P  L+    P S
Sbjct: 123 LEMQVTNRVVNVVEEGVDVALRVRPTLEDSGSMVVKRLDEVRLLLVASPEQLRRQGTPTS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L   + +       +       +    R            +  L++    + G+G+ 
Sbjct: 183 LRDLALLDTLAMSAADGRA--SLRLIGPEGREETVHFTPRYVADDLLTLKFAALAGTGLC 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +PDY+         LV ++     P   V+  +      +  +++F +F+
Sbjct: 241 WMPDYMCMSELQEGRLVHLLPQWTQPRSVVHAVFASRRGLSPAVRSFLDFL 291


>gi|328469471|gb|EGF40417.1| putative transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 318

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R + LTE
Sbjct: 1   MDKIRSLRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V  +L   +  L+  +   SG L+I   +  G+  ++  LKEF   YP 
Sbjct: 61  AGRRYANTARFVLDELAACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I +  D+  +DI     D +IR    +Q S LI R+L  I      +  YL     P 
Sbjct: 121 ITIDIHYDDAYVDIIEQGIDVSIR-SGVVQDSQLIMRQLSPIDFIICGSQDYLTRHGVPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                + H+ + F       +               P  +   VN   S+ + C  G G+
Sbjct: 180 GPDAFNDHSWVRFRFKQTGKLLPIRMPEPDGTSEYNPERN-FIVNDGESMAELCAEGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +P +I +D      LV I   +      VY  Y        +++ F +FI    +D
Sbjct: 239 TQIPHFIARDWLKAGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFITQAIQD 296


>gi|209518562|ref|ZP_03267382.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501012|gb|EEA01048.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 310

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 123/293 (41%), Gaps = 5/293 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + VF  VA   SF  AA QL ++ S++S+ +  LE  +G  LF R  R + LTE G 
Sbjct: 12  LDGVEVFLSVAEHRSFRGAAAQLGVTPSAVSQAVRVLEARIGATLFIRTTRSVGLTEAGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        + +L       +    +PSG LR++    +   LL+  +  F    P++++
Sbjct: 72  RFLARAKPAFEELVAASEVARGLGERPSGLLRLSVPRAVVPILLEPLIASFCKANPEVEV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++   + ID++ +  D  IRL + + +  +              +P Y      P  + 
Sbjct: 132 EIVASKELIDLATEGFDAGIRLGQFVAADMIAVPLSPPFRFVVVGSPGYFAARGRPECMD 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I +                  +PI          + +L I+   + G G+A L
Sbjct: 192 DLREHACIRWRRSSGALALWS--FNDHGQPIEIAVSGPFIASDFLGILGAAIEGIGLAQL 249

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P+ +  +      LV ++++       V+  YP   +   KL+AF + +  +A
Sbjct: 250 PEPMAAEGLKTGKLVHVLDEYAPMVPGVFLYYPSRRQIMPKLRAFIDHVKSRA 302


>gi|167584782|ref|ZP_02377170.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 323

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 133/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTVSQTMLSRILPEFLH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P +++++I R L         AP  L  
Sbjct: 121 RYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPENANIIVRPLWRTEQMLVGAPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L     +    +  + +  FN +A             L     ++I +  +
Sbjct: 181 NAPPLVPDDLAHFETLDTPSVDGRHV--FNLIAPDGTKHVHEHDPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         +++F +++  K
Sbjct: 239 DGVGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRSFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|146311748|ref|YP_001176822.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145318624|gb|ABP60771.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 306

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 127/298 (42%), Gaps = 6/298 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA QL +SQS++S  +  LE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRNLEARLDVRLLTRTTRSVVPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    ++E     L++   +P+G +RI+        +L   LK F+  YPDI 
Sbjct: 65  EQLLVRLTPHLVEIEQELTALRDRRDRPAGNIRISAGEHAMSAVLWPVLKPFMAHYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ +DN   DI     D  +RL + I    +  R    + M    +  Y      P + 
Sbjct: 125 IEVTVDNGLTDIVDGRFDAGVRLGEQIAKDMIAMRIAPDMRMAVVGSAAYFAQYGVPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           + L+ H  I     +P     + W    +      R+   L +NS    +   V G G+A
Sbjct: 185 EALENHRCINM--RLPTLGGLYAWEFEQNGREMRVRVDGQLTLNSLPQRLDAAVAGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            +P   V D   +  LVR++E         +  YP   ++T         +  +   W
Sbjct: 243 YVPQDTVVDLVADGQLVRVLESWCPSFEGYHLYYPSRRQHTTAFTLLVEALRNENAQW 300


>gi|90410160|ref|ZP_01218177.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90329513|gb|EAS45770.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 308

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 137/295 (46%), Gaps = 12/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +RVF  V  SGSF+ A   LH++ SS++R I  LE ++ + LF R  R L LTE+G 
Sbjct: 2   LDLVRVFTQVVESGSFSKAGHALHMAPSSVARNIDNLEKQLRVTLFKRSTRQLLLTEEGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 S++    +     + +++  PSG LRI+     G   +   L +FL  YP++ +
Sbjct: 62  YFLVGASKLMEDADQLIRSMDKTNDVPSGTLRISVFESFGNLCINPILPDFLKRYPNVTV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + LD++ +D++ +  D  IR+ +P   SSL  R L+  H    A+P YL+ C  P + +
Sbjct: 122 DIELDDRMVDMNAENIDLGIRIGRP-ADSSLNARMLMPNHTILCASPSYLERCGTPTTPE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E+ +HN +       +    F+      +         L       +M   + G+G+ LL
Sbjct: 181 EVSQHNCLLLSRDRKRNYWHFS---NKKQHKKVAVKGNLYSRGGSPLMSAALGGTGLLLL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPS-----FTVYFCYPEALKNTGKLKAFRNFIF 291
             ++V D   +  L +++ D            +Y  Y        +L+AF +++ 
Sbjct: 238 SSWMVSDSIKDGKLQKVLPDWTASPHEHAGIEIYAVYRGGKYPKPQLRAFLDYLV 292


>gi|325527485|gb|EGD04816.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 313

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP 
Sbjct: 61  AGQRYLDRCQRILAYIDEAEAEAADAQAKPSGRLHVHATTSFGQTYVVPAVVRYRQRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P
Sbjct: 121 VAVELTLSQHVPDIIDEGYDVSLQLSATELPDSGLVSQRLGEVHSVLCASPAYLKERGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L+ H  +     +    + ++      R   E   S  QVN   ++      G G
Sbjct: 181 QTVRDLEGHACLQLVTPV-FPRDRWHLDGPDGRETFELPASDFQVNIADALGAALRAGLG 239

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP         +  LVR++ +      TVY  YP       K++ F +F+  
Sbjct: 240 IGSLPMSTALPALASGALVRVLPEYRLQKLTVYTLYPSRQYLDAKIRTFVDFLRE 294


>gi|260772457|ref|ZP_05881373.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260611596|gb|EEX36799.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 291

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V   GS+T  + +  +  ++I+R+I  LE  + ++L  RHAR LTLTE 
Sbjct: 1   MKLDDLNLFRLVVEHGSYTATSRKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  R  S +  +L +    + +     SG +R++   +L + ++      F+  YPDI
Sbjct: 61  GERFFRDCSPLLQRLASMAEAITDECRGASGTIRLSAPENLTKRMMMPMFNAFMHQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L   N  + +     D   R+  P + SSLI RK+  +     A+P YL     P  
Sbjct: 121 NLELTTSNHAVQLDPTEWDVIFRVG-PQRDSSLIARKISEVKDILVASPLYLAKHPTPTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +++L+    L+      +              +   Q ++   +   C  G GI 
Sbjct: 180 AEQLSQYSLLKGDPLL-----KWQLCNDKGETCINNDVGRFQASTLNVVRSACSDGLGIT 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD ++K+   + +LVR++ D       +Y  Y        K++ F +F+  
Sbjct: 235 LMPDVMLKEFLADGSLVRVLPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 287


>gi|167836875|ref|ZP_02463758.1| transcriptional regulator [Burkholderia thailandensis MSMB43]
          Length = 313

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 129/296 (43%), Gaps = 5/296 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+QL+ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRVFARVVDAGSFTAAAQQLNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++   +E  + E  ++  +PSGKL++     LGQ+     +  +   YP+
Sbjct: 61  AGERYLQRCEQILAYVEQAEAEASDAHARPSGKLKVHCMTSLGQHYTVPAVSRYRKRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L L  +  D+  +  D ++ + + +  S L+ ++L        A+  Y++    P 
Sbjct: 121 VQVDLTLAQRLPDLLDEGFDVSLVVGRELPDSGLVSQRLGETFSVVCASRGYIEAHGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +          +++  +               +VN   ++      G GI
Sbjct: 181 RPQDLASHVCLGMV-APGLYWDEWKLMGPHGEESVTLAPPPFRVNVAEALAAGIREGMGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP Y       N + VR+M +  +    +Y  Y        K++ + +F+  + 
Sbjct: 240 GVLPLYSAIAGLRNGDFVRVMPEYRSHVMNIYALYASRQYLDAKIRTWVDFLRDEL 295


>gi|116255385|ref|YP_771218.1| LysR family transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115260033|emb|CAK03131.1| putative LysR family transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 297

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +VAR  SFT AA ++ +SQS++S  I  LE  +G++L  R  R ++LTE G +L
Sbjct: 8   DLNAFALVARERSFTRAAAKVGVSQSALSHTIRQLEARLGVRLLTRTTRAVSLTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    +++     L     KP+G +R++       ++L   L++FL  YPDI+++L
Sbjct: 68  LDGIGPHLDEIDAQVEALSALRDKPAGTIRLSAADYAITHVLWPKLRKFLPQYPDIKVEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ILDN   DI  +  D  +R+ + +    +  R      +    +P Y K    P   ++L
Sbjct: 128 ILDNGLTDIVNERYDAGVRMGEHLAKDMISARIGPDFSLAVVGSPSYFKEHGIPSHPKDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  I F   +P     + W    +    + R+   L  N+  + ++  + G G+A +P
Sbjct: 188 VGHTCINF--RLPSSGGLYVWEFEENGQEIKIRVDGQLAFNNIFNALEAALDGFGMAYIP 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             IV+   +   L  ++++   P    Y  YP   +++    A  + +  +A
Sbjct: 246 LEIVQPLVNERKLEHVLQEFSPPWDGYYLYYPSRRQSSPAFAALLDALRHRA 297


>gi|84394407|ref|ZP_00993125.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84374976|gb|EAP91905.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 306

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 129/288 (44%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F+ + +   FT AA+ L++S S IS+QI+ LE  +GIKL  R  R LTLTE G   +
Sbjct: 1   MVIFHALIKHEGFTSAAKSLNVSVSHISKQIALLEDSIGIKLVQRTTRSLTLTEAGEVFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++++ ++  Q+++       SG  RI  +   G   +   + +   LYP ++I++ 
Sbjct: 61  QHCEQLFNTVKAAQMDMDSQRDDISGIFRIGLSQSFGTLHIIPAIDQLRQLYPQLRIEVH 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D  I   + +     I ++L        A+P YL     P    +L 
Sbjct: 121 LFDYKVDMIEERLDLWITNNEDLP-EGYIAQRLADSQFVVAASPDYLIKAGTPHVPSDLI 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            HN + +     +  +  +W     +     +++    V+   ++    V G G+A L  
Sbjct: 180 DHNCLIYRS---RERDYTSWAFDNGQENLSVKVAGDYSVDLAEAVRDAAVSGWGVAYLAT 236

Query: 247 YIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           Y+VK+      L++++ +         Y  YP       KL A   FI
Sbjct: 237 YLVKEEFRTGKLIQVLPEWRASQLMPFYAVYPSRKNMPKKLSAVIEFI 284


>gi|312961144|ref|ZP_07775649.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311284802|gb|EFQ63378.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 305

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 128/294 (43%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AA+ L L ++S++  I  LE  +G++L  R  R +  T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFAKAADSLQLPRASVTVLIKQLEAHLGVQLLQRTTRQVNPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++   ++   LE T+     S   P G L I     +G+ L+   L  F   YP 
Sbjct: 61  DGAAYYQRCVQLLTDLEETEAVFSTSRRNPRGTLSIDMPSGIGRFLVIPALPTFTARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ L+++ +D+  +  DC +R    +   SL+ R L  +     A+P YL+    P 
Sbjct: 121 IELEIGLNDRPVDLIREGVDCVLRGGLAL-DESLVARPLAMMDQLTLASPDYLERMGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H+++ +   +        +    +          + VNS    +  C  G G+
Sbjct: 180 TLDDLAGHSMVEYVSTVSGKRFGLEFQLAGELRAIN-LAKRVAVNSSDGYLAACQAGYGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P Y          LV ++  +  P   +   YP   + + +++ F +++  
Sbjct: 239 IQAPYYHAIQELAQGTLVEVLPQLAVPKMALTALYPPHRQLSQRVRVFVDWLVE 292


>gi|320181163|gb|EFW56082.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Shigella boydii ATCC 9905]
          Length = 307

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 135/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR  SF   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRASFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLVIKERDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|77459989|ref|YP_349496.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383992|gb|ABA75505.1| putative LysR-family transcriptional regulatory protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 311

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 126/297 (42%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR+F  V   GSF+  A +  ++ SSISRQI  +E  +  +L YRH R +T TE G 
Sbjct: 9   FKALRLFVAVLDHGSFSEVARREGVAPSSISRQIQLMEQALNQQLLYRHTRAVTPTEAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      V  +LE  +  LQE   +P+G +RI   +  GQ  L   L      YP +Q+
Sbjct: 69  MLGHHARLVLVQLEEAEQALQEQQSEPTGLVRINAPVVFGQRHLTPWLGRLCERYPKLQL 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +  ID   + AD   R+  P+  SS+  R L        A+P YLK    P    
Sbjct: 129 DIQQTDHYIDPLQEGADLLFRIG-PLHDSSMQARILAPHRFQVAASPAYLKRYGTPQHPD 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVLGSGIA 242
           +L +H  + +     +      W    D+    P      +  N   ++ Q  V G G+ 
Sbjct: 188 DLARHQCLAYKGATGQQ----RWFFRQDQGEWAPYAVKGPITGNHADTLTQAAVQGLGLV 243

Query: 243 LLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + P +++ +      LV ++ +           +   +P + + + K++   +F   
Sbjct: 244 MFPSWLIGEAVREGTLVPVLGEYQVSNSVEPQQIAVLWPGSRRLSVKVRTVIDFFIE 300


>gi|323976713|gb|EGB71801.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
          Length = 302

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + +   ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELDAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED IT        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWITERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|86360876|ref|YP_472763.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284978|gb|ABC94036.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 302

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 138/303 (45%), Gaps = 10/303 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D  D++++F  +    SF  AA  L L++S+ +  I  LE ++G++L  R  R +  T
Sbjct: 5   DMDRLDRMQLFIRIVERRSFAAAASDLGLARSTATEAIKQLEDDLGVRLLERTTRHVAPT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  +R    +  +++  +   ++   +P G LR+     L +  L   L EFL  YP
Sbjct: 65  LDGAAFYRRCVAILAEVDEAENVFRDM--QPRGLLRVDAHPLLTRTFLLPRLNEFLDRYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +Q+   ++ +D+  +  DC IR  + I  S LI R+L  I     A+P Y+     P
Sbjct: 123 LLDLQIGQGDRLVDLVREGIDCVIRAGE-IADSGLIMRRLGMIAEITCASPAYIARHGVP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            S   ++ H  + F  +  +  +      TV   +    + C L VN+  ++     LG 
Sbjct: 182 RSPDAMEGHRAVGF--ISSRTGQVMPLEFTVGSTVRSVTLPCRLTVNNSDTMSDLARLGF 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+   P Y ++   D   LV ++ D + P   +   YP+  + + +++ F ++I     +
Sbjct: 240 GLIQAPRYRLQRDLDEGTLVEVLADFLPPPTPLTALYPQNRQLSPRVRVFLDWIVELFSE 299

Query: 297 WKF 299
             F
Sbjct: 300 ADF 302


>gi|94312980|ref|YP_586189.1| putative LysR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93356832|gb|ABF10920.1| putative transcriptional regulator, LysR family [Cupriavidus
           metallidurans CH34]
          Length = 300

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 132/298 (44%), Gaps = 10/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V  +G FT AA +L +S S +SR I+ LET +G++L  R  R +  T 
Sbjct: 1   MDRLQAMKTFVTVVDTGGFTPAARKLDVSLSVVSRVITELETHLGVRLLTRTTRLVRPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  ++E  ++    +   P GKL I  ++  G+  +   + E+L  YP+
Sbjct: 61  TGATYYENCRRILAEIEEAELATTGAHAAPRGKLSITASVLFGRRFVTPIVVEYLRRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  + +L +++++   +  D  +R+  P+ SSSL    +  +     AAP YL     P 
Sbjct: 121 VDAECLLIDRNVNFVEEGIDVGVRIG-PLPSSSLQAIPVGRVRRVVCAAPDYLARFGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           +  +L  H +I    +         W    D      R++  L  ++  S +   V G G
Sbjct: 180 TPDDLAHHTVIQTTGISTLP----EWRFMRDGETAPTRLTPRLATSTNDSAIGAAVAGFG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A +  Y + D   +  L  ++++   P   ++  + E      K++AF +      R
Sbjct: 236 LAAVLSYQIADEVRDGKLRIVLDNFEQPPLPIHVIHREGRHAMHKVRAFIDLAVDTLR 293


>gi|206560893|ref|YP_002231658.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198036935|emb|CAR52844.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 308

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 126/286 (44%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF      GS   AA +  LS S   + +S +E ++ ++L  R  R LTLT+ G   +
Sbjct: 7   MAVFVSAVEEGSLVSAARRFGLSPSMAGKHVSAIEEQLKVRLLQRSTRKLTLTDVGRSYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + E    E Q++     G LR+A     G   L   +  +L  YPD+ I+  
Sbjct: 67  TRCKRLLEEYEDANREAQDAQQSVHGILRVAAPTTFGALHLGRVVSSYLAEYPDVSIETT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  D  D AIR+ + +Q S L+ R+L +  M   AAP +L    EP ++++L 
Sbjct: 127 LSDRYVDLLADGIDVAIRIGR-LQDSDLVARRLASCRMMFCAAPSFLARHGEPKTVEQLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +   + F   +     D++      +         L  N+   ++   + G+G+   P +
Sbjct: 186 QAPRLAFSQAVSAG--DWSVTDANGQTHHIDGAIRLAANNMQMLLAAALTGAGVVYGPSF 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +    +  L  ++ D  T    ++  YP     + K++ F   +
Sbjct: 244 VFEQSIASGALRVLLPDHKTTDLAIHAIYPSKRHVSLKVRRFIEHL 289


>gi|330721154|gb|EGG99275.1| Transcriptional regulator2C LysR family [gamma proteobacterium
           IMCC2047]
          Length = 297

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 128/297 (43%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + VF  VA +  F   A +L++S  +++R I+ LE ++G+KLF R  R +  TE
Sbjct: 1   MDRFHLMTVFVAVAETEGFAAGARRLNMSPPAVTRAIASLEAQLGVKLFNRTTRYVRTTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L+         + +P G L I      G+  +   + E+L  YP+
Sbjct: 61  AGQRYLSDARRILADLDAADEAAAGINTEPRGHLTITAPAMFGRMHVMPGIIEYLERYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            Q+  +  ++ +++  +  D  IR+ + +  SS+   ++  + +   AAP YL     P 
Sbjct: 121 TQVSAVFFDRVVNLLEEGIDVGIRIGE-LPDSSMRALRVGEVRIITCAAPEYLAKNGIPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL +H +IT           F    +  R       S L+V +  +++     G GI
Sbjct: 180 HPDELSEHEVITSLAGNSSANWSFPSTKSSQR-----LTSRLKVTTNDAVIAAAEQGLGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             L  Y V        L  I+ED       V+  + E   ++ +++AF + +  + R
Sbjct: 235 IRLLSYQVLPAVAEGKLQVILEDFEPTPQPVHIIHREGRFSSARVRAFIDLLAEQLR 291


>gi|331667276|ref|ZP_08368141.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331065632|gb|EGI37525.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
          Length = 302

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYEQLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + ++  ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELEAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED  T        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|28898958|ref|NP_798563.1| transcription regulator LysR [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838692|ref|ZP_01991359.1| AphB/LysR family [Vibrio parahaemolyticus AQ3810]
 gi|260365294|ref|ZP_05777851.1| AphB/LysR family [Vibrio parahaemolyticus K5030]
 gi|260878844|ref|ZP_05891199.1| AphB/LysR family [Vibrio parahaemolyticus AN-5034]
 gi|260896234|ref|ZP_05904730.1| AphB/LysR family [Vibrio parahaemolyticus Peru-466]
 gi|260899997|ref|ZP_05908392.1| AphB/LysR family [Vibrio parahaemolyticus AQ4037]
 gi|28807177|dbj|BAC60447.1| AphB/LysR family [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747912|gb|EDM58784.1| AphB/LysR family [Vibrio parahaemolyticus AQ3810]
 gi|308088840|gb|EFO38535.1| AphB/LysR family [Vibrio parahaemolyticus Peru-466]
 gi|308094250|gb|EFO43945.1| AphB/LysR family [Vibrio parahaemolyticus AN-5034]
 gi|308107435|gb|EFO44975.1| AphB/LysR family [Vibrio parahaemolyticus AQ4037]
 gi|308115403|gb|EFO52943.1| AphB/LysR family [Vibrio parahaemolyticus K5030]
 gi|328474502|gb|EGF45307.1| LysR family transcriptional regulator, transcriptional activator
           AphB [Vibrio parahaemolyticus 10329]
          Length = 291

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 136/293 (46%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +   S +  +L +T  E+ +     SGK++I+   +L + ++     +F+  YPDI
Sbjct: 61  GERFYHECSPLLQRLTSTAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNDFMKKYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L  +N    +     D   R+  P + SSLI RK+  +     A+  YL     P  
Sbjct: 121 NIELTTENNADQLDPTEWDVIFRVG-PQRDSSLIARKIGEVKDILVASQDYLAANPAPNH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H+L+         +  +  + +    +        Q N+   +   C  G GI 
Sbjct: 180 AEELSNHSLL-----KGYPLIKWTLINSKGESVVNVERGRFQANALNVVRSACSEGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD ++K   ++  L+R++ D       +Y  Y        K++ F +F+  
Sbjct: 235 LMPDVMIKEYIESGELLRVLPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 287


>gi|261251063|ref|ZP_05943637.1| regulatory protein LysR:LysR substrate-binding [Vibrio orientalis
           CIP 102891]
 gi|260937936|gb|EEX93924.1| regulatory protein LysR:LysR substrate-binding [Vibrio orientalis
           CIP 102891]
          Length = 289

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 135/289 (46%), Gaps = 9/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF +AA    +S + + + +S LE  +G +L +R  R  +LTE G   +
Sbjct: 1   MKVFAYVVEHGSFRNAAHHFDISPTMVGKHVSFLEQSLGTQLIHRTTRKQSLTEAGKLYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   +   +  +     +P+G +++   +  G+ +L   + +FL  YPD+ ++LI
Sbjct: 61  QECQRIIEDIINAENLIHTLINRPTGTVKVNCPVTYGKKILAPIVADFLTEYPDLNVELI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN  ID     +D  IR+   +  SSL+ RKL    M   AAP YL    + + +++LD
Sbjct: 121 LDNNLIDPYRSDSDVIIRIGD-LVDSSLVARKLGDYEMTYCAAPSYLAKHDQLVCLEDLD 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ + F     +  +  N  +           + L  N+   +    + G+G+ L P  
Sbjct: 180 QHHCLGFQYHQGESQQVVNMPSNTFGLTN----TRLTSNNGDVLKFAAINGAGVLLQPKI 235

Query: 248 IVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +V++      LV +++        ++  Y  + + + K + F  F+  +
Sbjct: 236 LVEEEIQSETLVELLQAYAPKPKPIHLLY-RSKQLSLKNRTFVEFVLKQ 283


>gi|326388086|ref|ZP_08209689.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207252|gb|EGD58066.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 302

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 131/305 (42%), Gaps = 11/305 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     + VF +  R GS + A   L +S +  ++ +  LE  +G  L  R  R L+LT
Sbjct: 1   MADRLTGIEVFVLAMRLGSLSAAGRSLGMSAAMAAKHLGQLEERLGTTLVNRTTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+        +  +L   + E    S    G LR+      G   +     EF + +P
Sbjct: 61  QAGADYLDRAERILAELREAENEASARSQVIEGLLRVNAPASFGVMHISSLAAEFGVRHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L L+++ +D+  +  D AIR+ + +  SSL  RKL  +H+   AAP YL+    P
Sbjct: 121 GVTIELGLNDRYVDLLEERWDVAIRIGQ-LADSSLKARKLAAVHLALCAAPSYLEQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+++L  HN +++   +   +    W    D  +       +  N+  ++++    G G
Sbjct: 180 RSVEDLKHHNCLSY--TLSSRLGGNTWGFGRDGSVRVAIKGSMLANNGEALVKAACTGQG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK--- 293
           I   P +I  +   +  LV    D+       VY       +   +  A+ +F+  +   
Sbjct: 238 IVYGPRFIAAEALNSGELVEFELDIPAMDMGAVYAVTHPTRRPNARTSAWIDFLAERMPR 297

Query: 294 -ARDW 297
            A +W
Sbjct: 298 LAEEW 302


>gi|190893111|ref|YP_001979653.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190698390|gb|ACE92475.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327192563|gb|EGE59513.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 299

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 5/291 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F   A +G F+ AAE+LHL++S++S+ I+ LE  +G++LF R  R  +LT++G 
Sbjct: 4   LKGISIFVQTAEAGGFSAAAERLHLTRSAVSKTIARLEQRLGVRLFNRTTRTQSLTDEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        ++   + +L+    +  G+LR++  +  G+      L   L  +PD+++
Sbjct: 64  FFYERCLRAIEEIRIGEAQLESGRREVRGRLRVSMPVLFGRQCAAPILTRLLDDHPDLEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
                ++ +D+  D  D A+R      +  L+ R +    M   A+P YL+    P +++
Sbjct: 124 DFSFSDRIVDLLEDGFDLAVRNGPLKDNPDLMARAIAGQSMTVCASPAYLEKYGAPQTLE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I +          F   A   R I     S L+++   SI    V G G+A L
Sbjct: 184 DLAHHQAIVYRRGDNDRPWIFPAAAGPPREILPK--SRLRLDDLASIADAAVEGRGLAWL 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             ++V+D   +  LVR++ D+ +  F  Y  +P +     K++   + +  
Sbjct: 242 TCWLVRDRVLSGELVRVLTDMPSNIFQAYAVWPRSPVMLPKVRLAIDILAA 292


>gi|323525151|ref|YP_004227304.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382153|gb|ADX54244.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 305

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 144/299 (48%), Gaps = 8/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE
Sbjct: 1   MDRFEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  ++   +  L      P G +R+ T+  L + LL   L +F   YP+
Sbjct: 61  DGALFYERCVRILAEVADAESSLSNKRENPVGTIRVDTSGTLARALLLPALDDFYRRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L +++ID+  D  DC IR+  P + SSL+ R++    +   A+P YL+    P 
Sbjct: 121 IDVRLGLADRNIDLIQDAVDCVIRMGTP-EESSLVARRIGHARIVTCASPAYLEKYGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ +L +H  + +  +  +  + F +   V+  I +  + S L VN     ++   LG G
Sbjct: 180 TLDQLSEHRAVNY--VSARTGKTFPFEYEVNGEIAKVAMKSVLAVNDGSVYIRAGALGHG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I     ++V    +   L  I+ D  +P   +   Y      + +L+AF  ++    R+
Sbjct: 238 IIQPSRFMVAHLIERGVLKEILTDYTSPGTPLSILYAHRRNLSSRLRAFTEWVTELVRN 296


>gi|229528055|ref|ZP_04417446.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229334417|gb|EEN99902.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|327486018|gb|AEA80424.1| Transcriptional regulator [Vibrio cholerae LMA3894-4]
          Length = 301

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y   C +P
Sbjct: 125 DVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  +T                   + +  P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLTDHRCLT-----GSVKRWSYQHKETKQTLEVPVDGDLQCKNGRVLVRSALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFQDWHIPSVDFSLIYHKDKYQPVRLKRFIEF 290


>gi|262280597|ref|ZP_06058381.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258375|gb|EEY77109.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 300

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 146/300 (48%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE L  + S +SR ++ LET++ + L  R  R L LT
Sbjct: 1   MKSTIEELVAFITIIDTGSFVAAAEHLKQTPSGVSRSLTRLETKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ ++L   + ELQ+S    +G +RI +      +++   + +F   YP
Sbjct: 61  QEGQQFLVKARKILNELNAAEEELQKSDQGTAGLIRIDSATPFVLHVIAPLMHKFRECYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+I+L  +++ ID+     D A R  + +  SSL  + +    +   A+P+YL     P
Sbjct: 121 DIEIELNSNDQVIDLLQHKTDVAFRFGE-LNDSSLHAKLVCKSRLFIVASPYYLAIKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL++H+LI F    P  +  +      +    + +I   + +S  ++ Q  + G G
Sbjct: 180 TQPEELEQHDLIGFTR--PAYINSWPIKVGDEYFFAQAKI---KASSGETVRQLTIRGHG 234

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ V    +   L+ + ED I   + +++  Y +      +++ F  F+  + +D
Sbjct: 235 IARLSEFEVWKDIEEGRLIALFEDQIEHQYQSIHAVYYQQEHLPKRIRLFIEFLAEQLKD 294


>gi|260769351|ref|ZP_05878284.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260614689|gb|EEX39875.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|315181882|gb|ADT88795.1| no product [Vibrio furnissii NCTC 11218]
          Length = 309

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 128/291 (43%), Gaps = 10/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFILVVNEGSFTAAANKLGVTPSALSKLITRLELALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     + +  +           +PSG L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQCLVMVNAAQQAVELSSSDHTEPSGALTVAAPEAFLNSVLQPFVVPFLKKYPQIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+     D A +L       +L+ R+L   ++   A+P YL     P    +L
Sbjct: 132 RAADGEIDLFKHNIDVAFKLTDK-PDENLVLRELCKTNLVLCASPDYLAERGTPKHPTQL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +   +     + DF      D     P      VN     +     G GI +  D
Sbjct: 191 TEHDCLYLAETDKDHLWDF---LKDDEFHTVPVSGRYAVNHSQMRLNGVKNGLGIGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIF 291
           ++V+D      +V++++D    S     +   Y +      +L+ F +++ 
Sbjct: 248 FVVQDALAEGKVVQLLKDWTIKSNYHGAIAMQYAQTKYMPARLRVFIDYVM 298


>gi|190572638|ref|YP_001970483.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190010560|emb|CAQ44169.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 309

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 134/294 (45%), Gaps = 9/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  VA  GS T AAE L +S++ +SR ++ +E  +G +L +R  R ++LT 
Sbjct: 1   MDRLTAMTVFVEVAERGSLTAAAEVLDMSRAMVSRYLAEVEAWLGARLLHRTTRRVSLTG 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++    E  Q EL     +P G LR+  ++  GQ+ L   +  F+  +P 
Sbjct: 61  PGEAALARFRQMLAIGEELQGELASDDPEPHGTLRVTASVSFGQSHLARAVAAFVARHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +I+L+L ++ +++  +  D A+R+ + I   SLI R+L T      A P YL+    P 
Sbjct: 121 ARIELLLVDRMVNLVEERVDLAVRIARQI-DPSLIARRLATCRSVLCATPSYLQARGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L  HN +T   +     +    L    R +       +  N    +++    G+GI
Sbjct: 180 APEHLAAHNCLTHHYVGKSLWQ----LHRDGRSLSVAVGGNISANEASLLLEAVRAGAGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP Y V     +  L+ ++ +       ++  Y    +    ++ F +F+  
Sbjct: 236 AMLPTYQVAPLLRSGELIELLPEFSLDELGIHAVYASRRQQPAIMRRFLDFLAE 289


>gi|332184959|ref|ZP_08386708.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
 gi|332014683|gb|EGI56739.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
          Length = 318

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 126/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  LR F  VA   SF+ AAEQL +S S++S+ I GLE  +GI+L +R  R ++LTE G
Sbjct: 6   EFGALRAFAAVAEQRSFSRAAEQLGVSSSALSQLIRGLEERLGIRLLHRTTRSVSLTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    +     L     + + ++  P+G +R+          +   L      +PDI 
Sbjct: 66  AALLGDIAPAIDSLTGALEQARTTAKLPAGTVRLHCFHAAADRFVVPILPRLARAFPDIT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L +D+  +DI     D AIR+ + I+   +  R    I   A AAP YL     P + 
Sbjct: 126 LDLTIDDTVVDIVGSGYDAAIRIGEVIERDMVALRLGEDIRQLAVAAPAYLAEHGVPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L +H  I +    P     + W                L  +S   ++   + G GIA
Sbjct: 186 KDLLQHRCIRW--RWPGQPGPYAWEFFENGHWFSVAVEGPLITSSRAVMVDAALAGIGIA 243

Query: 243 LL---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L         D   LV ++ D   P    Y CYP+  +    L+A  + I
Sbjct: 244 FLKEESVVDAFDRGALVALLADWSVPFPGYYLCYPQQRQMAPALRAVIDMI 294


>gi|116252247|ref|YP_768085.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256895|emb|CAK07989.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 297

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L  F  VA +GSFT A+ +L LSQS++S  +  LE  +G++L  R  R L+LT+ G
Sbjct: 5   DFSELAAFIAVAEAGSFTRASAKLGLSQSAVSYSVRMLEQRLGVRLISRTTRSLSLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++ R     +  +E+    +     KP+G +RI T      ++L   +  FL  YPDI+
Sbjct: 65  ERMLRNLRPAFEHIESEIAAVTSLRDKPAGTIRITTFRYAAMSVLWPVMTTFLTEYPDIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ILD    DI     D  IR+ + +Q   +  R    + M    +P Y +N   P++ 
Sbjct: 125 MEVILDEGLTDIVAGRFDAGIRIGEQVQKDMVAVRIGPDLRMAVVGSPSYFQNRTIPMTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I++       +  + W    D      R++  L +N  L +    + G G+A
Sbjct: 185 RDLGDHRGISYRQTTGGGL--YAWEFERDSEELVVRMNGPLIINDSLMLEAAALDGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              +  V     +  L+R+++D   P    +  YP   ++T         +  K
Sbjct: 243 YTFESQVSQYVADGRLIRVLDDWCQPFPGYHLYYPSRRQHTAAFALLVEALRFK 296


>gi|113868195|ref|YP_726684.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526971|emb|CAJ93316.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 317

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 134/292 (45%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R ++LT 
Sbjct: 1   MDHFKQLETFVSVASRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRKISLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + L   +  +    VK SG LR+      G+  +   +  F+  +PD
Sbjct: 61  EGSAFLEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGYGRKHVAPLVPLFIESHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  DCAIRL   +  SSL+  +L        A+P YL     P+
Sbjct: 121 VSITLDLSDRVVDLVNEGFDCAIRLGD-LPDSSLVSIRLAETRRVVVASPEYLARAGRPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L +HN + FG      ++         R +       ++ +    + ++C+ G+G+
Sbjct: 180 APEDLQRHNCLAFG--ASANVQRGWVFQEEGRAVTVKVGGTMECSDGAVLHEWCLQGNGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A    + V     +  LV ++++   P   ++  +P+      +++ F + +
Sbjct: 238 AWRSWWEVGSEIASGRLVTVLDEFQAPPIGIHAVFPQRKHLPLRVRLFIDHL 289


>gi|87121640|ref|ZP_01077528.1| substrate-binding transcriptional regulator, LysR family protein
           [Marinomonas sp. MED121]
 gi|86163172|gb|EAQ64449.1| substrate-binding transcriptional regulator, LysR family protein
           [Marinomonas sp. MED121]
          Length = 309

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 141/299 (47%), Gaps = 10/299 (3%)

Query: 1   MS--FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+       ++ F V+AR GSFT AAE +  S+S +SRQ++ LE ++G+ L  R  R   
Sbjct: 1   MNKEISLPDIQAFVVIAREGSFTKAAELMGCSRSYLSRQLNQLEAQLGVSLIIRTTRAQR 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLL 117
           LT+QG   ++   +  +K+     +  ES+ + SG L I      +G+ L+   +  F  
Sbjct: 61  LTQQGEAFYQQCQQSLNKIHVAVNQALESASELSGPLNINCVGGYIGETLIMDLINGFSR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP+I+I+L  D++ +D+     D   R+   ++ S+LI RKL+ I +   A+P Y KN 
Sbjct: 121 LYPNIEIKLDFDSRRVDLISGEFDFVFRMGS-LEDSALIARKLMDIEIVTLASPEYFKNH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYC 235
             P+  +EL +H  IT G +        + LA     + E           +  +++   
Sbjct: 180 GRPIHPKELKEHACIT-GSIKNWRFVSSHELAADGSALAEDIQVKGPFSCKNGHAMVNNA 238

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G GI  +P     D      L+ + +D    S      Y +    + KLKAF+ ++ 
Sbjct: 239 KAGLGIVRVPVMYCLDEIKEGKLLHLFDDWQAASVAFNLIYLQDAYQSKKLKAFKEYVI 297


>gi|86138228|ref|ZP_01056803.1| hypothetical protein MED193_01835 [Roseobacter sp. MED193]
 gi|85825255|gb|EAQ45455.1| hypothetical protein MED193_01835 [Roseobacter sp. MED193]
          Length = 307

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 134/296 (45%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   LR+F +   + + + A   L ++ +  S +I+ LE  VG  L +R  R ++L+ +
Sbjct: 1   MDTQTLRLFVLACETLNISAAGRTLGMAPAVASTRIAKLERLVGADLLHRSTRKVSLSLE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        E+  + E     L +   K SG LR A      Q  L   L  F+  YPD+
Sbjct: 61  GQDFLPYAREMIAQEEAALAALGKGRTKVSGTLRFAAPSTFAQLYLAPLLPTFMDKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L +   D+     D A+R    +  SSL  RKL        A+P YL+    P +
Sbjct: 121 RLDLHLSDSQFDLIEGSFDLALR-NAVLADSSLTARKLADDTRILCASPAYLERYGTPAN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L KH LI F D  PK +   N +  +  P       CL +N  L+     + G+GI+
Sbjct: 180 PKDLAKHRLIAFKDTEPKALISNNGMQALFDPKSAAH--CLILNDGLTQKLTTLNGAGIS 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKA 294
           +   + V++   +  L R++ D    +   ++  YP++   + K++ F +F+  + 
Sbjct: 238 VNSLWAVQEEIADGTLTRVLPDYALSTEPALWLIYPKSNVVSAKVRVFMDFLIDQL 293


>gi|330811566|ref|YP_004356028.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379674|gb|AEA71024.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 322

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 132/292 (45%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +GSFT AA QL  + ++ISR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAEAGSFTAAAAQLDTTTANISRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ T   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILAYVEEAEAEASDAHARPAGQLKVHTMTGIGQHFVIDAIARYRKTHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L N+  DI  +  D +I L   +  S  + ++L   +    A+P Y+K    P 
Sbjct: 121 VTFDLTLANRVPDILDEGYDVSIVLASELPDSGFVSQRLGITYSIVCASPAYVKASGCPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  +     +   +E + +     + +     S   VNS  ++      G G+
Sbjct: 181 KPGDLLNHACLRLVSPVIP-LEKWVFDGPEGQEMVTINSSPFLVNSADAMKTAITSGMGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP Y   +   N  LVR+M +  +    +Y  YP       K+K +  ++
Sbjct: 240 GVLPVYAAIEGLRNGTLVRVMPNYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|26249641|ref|NP_755681.1| transcriptional activator TtdR [Escherichia coli CFT073]
 gi|91212488|ref|YP_542474.1| transcriptional activator TtdR [Escherichia coli UTI89]
 gi|191172543|ref|ZP_03034083.1| HTH-type transcriptional activator TtdR [Escherichia coli F11]
 gi|237706178|ref|ZP_04536659.1| transcriptional activator TtdR [Escherichia sp. 3_2_53FAA]
 gi|26110069|gb|AAN82255.1|AE016767_15 Hypothetical transcriptional regulator ygiP [Escherichia coli
           CFT073]
 gi|91074062|gb|ABE08943.1| hypothetical transcriptional regulator YgiP [Escherichia coli
           UTI89]
 gi|190907211|gb|EDV66810.1| HTH-type transcriptional activator TtdR [Escherichia coli F11]
 gi|226899218|gb|EEH85477.1| transcriptional activator TtdR [Escherichia sp. 3_2_53FAA]
 gi|307555167|gb|ADN47942.1| HTH-type transcriptional activator TtdR [Escherichia coli ABU
           83972]
 gi|320195222|gb|EFW69851.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           WV_060327]
          Length = 326

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 25  KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 84

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 85  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 144

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 145 FELFDRQIDLVQDNIDLDIRINDAIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 203

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 204 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 260

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LVR++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 261 SEWDVLPFLESGKLVRVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 310


>gi|312962648|ref|ZP_07777137.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311283023|gb|EFQ61615.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 302

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 134/295 (45%), Gaps = 5/295 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F  V    SFT A E L L +S++S  +  LE  +G +L  R  R +  T+ G 
Sbjct: 4   LELLRTFVRVTELSSFTQAGESLGLPRSTVSEHVQALEELLGARLLQRTTRKVQATQDGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+  + ++   ++  +   ++   + +G++R+     + ++L+   L +F+  +P I++
Sbjct: 64  VLYERSKDLLAHMDELEGLFRQDEAQLTGRIRVDMPNVMARDLILPRLPQFMDAHPLIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D+  +  DC +R+       +++ R L ++ +   A+  YL+    P ++ 
Sbjct: 124 EISTTDRQVDLLAEGFDCVLRVGAQ-PDQTVVARLLCSLPLLNCASATYLERYGVPQTLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+L+ +   +      F +L   ++    P    + V+S  +    C+ G GI   
Sbjct: 183 DLADHHLVHYVRPLGSRSAGFEYLQG-NKVQRIPMAGRVTVSSTDAYKSACLGGFGIIQA 241

Query: 245 PDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P   + ++  +  LV ++     P   V   Y        +++ F  ++    ++
Sbjct: 242 PALGMAEELASGELVAVLPGFSAPPLNVSLLYAGQRHLPLRVRVFIEWMADTLKE 296


>gi|307728776|ref|YP_003906000.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583311|gb|ADN56709.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 300

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 131/297 (44%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L +F +VAR  +   AA +L ++  ++S++++ LE  +G++L  R  R L+LT 
Sbjct: 1   MDGFLDLNLFALVARHRNLAAAARELGVTPPAVSKRLAQLERRLGVRLINRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G       S +  +L   +  + +S  +P+G LR+  +   G+  +   + EF+  YP 
Sbjct: 61  EGELYLSNGSRILDELSELEHLVTQSRGEPTGLLRVNASFGFGRARIAPAVSEFVARYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +I L L ++ I +  +  D  IR  + +  + +  R L+       A+P Y+     P 
Sbjct: 121 TKILLHLTDRPISLQDEGFDLGIRFGE-VPDARINARLLLENRRMVCASPGYVARHGNPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I   +            +   R         L  N    ++Q+ + G GI
Sbjct: 180 VPHDLTRHACIVLRENESAYGTWH--FSRGKRTETVKVDGALASNDGSVVLQWALEGRGI 237

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +   + ++ +     LV ++ D   P   ++  Y E  + + KL+ F +F+    R
Sbjct: 238 VVRSQWEIEGHLARSELVPLLPDWTLPDANIHAIYLERNQLSVKLRTFVDFLGEHLR 294


>gi|241767027|ref|ZP_04764813.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241362450|gb|EER58386.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 315

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 144/297 (48%), Gaps = 8/297 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF VV R  SF  AA +L  S + +S++I  LE E+G+KL +R  R + +TE+G +
Sbjct: 19  EDLRVFTVVVRKASFGEAATELGASPAYVSKRIRLLEQELGVKLLHRTTRRVAVTEEGER 78

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + +    +   ++    E+  +  +P G+LR++++   G+ ++   +   +  +  +Q++
Sbjct: 79  VFQWAQRILDDMDQLLQEVAVTRREPRGQLRVSSSFGFGRQIVAPAMSRLVAQHAGLQVR 138

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R+L   H    AAP YL     P ++ +
Sbjct: 139 LEVFDRLVDVAGEGFDLDVRVGDEI-APHLIARRLADNHRVLCAAPAYLARHGSPRTLAD 197

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ +   +              +D  +       L  N+   ++Q+ V G GIAL  
Sbjct: 198 LPGHDCLVIKERDHPFGVWRLRGGAMDETVKV--RGPLSANNGEMVVQWAVDGRGIALRS 255

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR-DWK 298
            + V  +     LV+++ D    +  V+  YP  L  + K++    F+    R +W+
Sbjct: 256 LWDVGAHLRAGRLVQVLPDWRQEA-NVWAVYPTRLDRSAKVRVCVEFLEAYFRQEWE 311


>gi|229522580|ref|ZP_04411996.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229340565|gb|EEO05571.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 301

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M    +P Y   C +P
Sbjct: 125 DVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLTSPTYFTLCGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLADHRCLT-GSVKRWSYQHKETKQTLD----VPVDGDLQCKNGRVLVRAALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|187930371|ref|YP_001900858.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187727261|gb|ACD28426.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 306

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 123/283 (43%), Gaps = 6/283 (2%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
             GS + AA+ + +S+  IS+ +  LE  +  +L  R  R L+LTE G+     + E   
Sbjct: 15  ERGSLSAAADAMGISRGVISKALVRLEARLQTRLLQRTTRRLSLTEAGAAFFEKSREGLA 74

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
            ++  +  +     +  G LR++        LL   L  F   YP +QI L ++++  D+
Sbjct: 75  LVDAAEQAVSALRDEARGTLRVSAPASFAVTLLAPLLGAFQARYPAVQIDLDMNDRYADL 134

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG 195
                D AIR+   ++ SSL+ R+L       Y AP Y      P S ++L  HN + + 
Sbjct: 135 VAGRIDVAIRIGM-LEDSSLVARRLANCAHAIYGAPSYFSKNGIPRSPEDLRDHNCLVYA 193

Query: 196 DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN--- 252
           +       D+       +         +  N+ L + +    G G++L P Y+V+D+   
Sbjct: 194 NY--DGPYDWVLTDADGQRHVAHVTGSMLANNSLVLREAARSGLGVSLGPAYLVRDDIAA 251

Query: 253 PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             L  ++ D       ++  + + +    K++AF +F+    R
Sbjct: 252 GRLQAVLTDYTAREVPLHAVFTQRVHLLPKVRAFVDFLGDHLR 294


>gi|229523164|ref|ZP_04412571.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229339527|gb|EEO04542.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 291

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 144/292 (49%), Gaps = 9/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  +++  +  ++I+R+I  LE  + ++L  RHAR LTLTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++  S +  +L +   E+ +     SG++RI+   +L + ++      F+  YPDI
Sbjct: 61  GERFYKDCSPLLERLASMTEEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L++ N+  D+     D   R+  P + SSLI RK+  +     A+P YL + ++P  
Sbjct: 121 HIELMMSNQADDLDPTEWDVIFRVG-PQRDSSLIARKIGEVKDILVASPQYLSSHQQPTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL +H L+         +  +    +    +        Q ++   +   C  G GI 
Sbjct: 180 AEELHQHQLL-----KGYPLLKWQLTNSQGETVVNSDRGRFQASALNVVRSACSEGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L+PD +++   ++ +LV+++ D  +    +Y  Y        K++ F +F+ 
Sbjct: 235 LMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 286


>gi|222109548|ref|YP_002551812.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221728992|gb|ACM31812.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 312

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 124/297 (41%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D       F  VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLLVRTTRRITLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +   +   +  +    VK +G LR+      G+  +   +  F  L+P+
Sbjct: 61  EGSAFLEDCQRLLSDVANAEASVSAGGVKATGHLRVTAPAGFGRRHVAPLVPRFHDLHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P 
Sbjct: 121 VTLSLNLSDRVVDLAGEGYDCAVRVGD-LPDSSLVSVRMADNRRLCVATPQYLQRRGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCV 236
              EL +H+ +T      +       +           +       L  +    +  +C+
Sbjct: 180 HPGELAQHDCLTLSSDASQTRGWAFRVPVAGGGGATEVVHFKPGGPLDCSDGQVLHDWCL 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GIA    + V+       LV ++E+   P   +Y  +P+      +++ +  ++
Sbjct: 240 GGWGIAWRSTWEVESEIAAGRLVAVLEEFAAPPNGIYVVFPQRKHLPLRVRLWIEYL 296


>gi|77456947|ref|YP_346452.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77380950|gb|ABA72463.1| LysR-family regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 303

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 132/301 (43%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L++F  V   GS + AAEQ+  + S++SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQIFVCVIECGSISAAAEQVGQTPSAVSRTLSRLEAKLDTTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  +++  +  L      PSG+LRI        + +   + EF  LYP
Sbjct: 61  EEGKYFFEQAKLILDQMDQLEERLSSRQQTPSGRLRINAASPFMLHAIVPYIDEFRRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ++L  ++  ID+     D AIR+   +  S+L  R L    +   A+P YL+    P
Sbjct: 121 DIQLELNSNDLIIDLLEQSTDVAIRIG-TLADSTLHARSLGCSPLLIVASPAYLEKHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L +H L+ F            ++     PI       +  +S  ++    + G G
Sbjct: 180 REVADLSEHTLLGFTQNEGLNQWPLRYVHGDRWPI----TPAISASSGETVRHLALEGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L  ++  D+     L  ++ +  +     +   Y    +   +++ F +FI  K   
Sbjct: 236 IACLSHFMTIDDIRAGRLKVLLAEFNSGYRQPINAVYYRNSQLALRIQCFLDFIQSKLAA 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|126172880|ref|YP_001049029.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|304410720|ref|ZP_07392338.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307304815|ref|ZP_07584565.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|125996085|gb|ABN60160.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
 gi|304351204|gb|EFM15604.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306912217|gb|EFN42641.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 296

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 130/298 (43%), Gaps = 8/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR GSFT AA  L ++QS++S+ ISGLET + I+L  R  R ++ T
Sbjct: 2   MKRNLNDLLCFVTVAREGSFTRAAALLGVTQSALSQAISGLETRLEIRLLTRTTRSVSAT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L       + ++E+    L     KP+G +RI     + + LL   L   L  YP
Sbjct: 62  EAGERLLNAIGNRFDEIESELDALTAMRDKPAGTVRITCGDFVLRTLLIPKLSPLLHNYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCRE 179
           DI+++  ++    DI  D  D  IRL   I    +I   +     M A A P Y      
Sbjct: 122 DIKVEFDVNYGFRDIVADRFDAGIRLGDTI-DKDMIAIPIGPHQTMAAVATPAYFAQHPI 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P   Q+L +HN I      P     + W    D       +   L  N+   I+   +  
Sbjct: 181 PKHPQDLIEHNCINI--RFPTHGGLYVWEFEKDGKQLNVHVDGQLIFNASHHIVDAALQS 238

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GIA LP+   + +     LV+++ED        Y  YP   + +       + + L+
Sbjct: 239 NGIAYLPEAEFEPHIKAGRLVKVLEDWSLSFAGYYLYYPSRRQPSPAFTLVADALRLR 296


>gi|311104983|ref|YP_003977836.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310759672|gb|ADP15121.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           51 [Achromobacter xylosoxidans A8]
          Length = 301

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  GS + AA  L +S++ +SR ++ +E  VG++L +R  R L+LT 
Sbjct: 1   MDRLKAMQVFVEVADRGSLSAAAIHLDMSRAMVSRYLAEMEQWVGVRLLHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++      ++   +   +  +      P G LRI T++  G   L   + +++ L+P 
Sbjct: 61  AGAETLPRCRQMLDMVGDLRNAVSTPDDTPRGLLRITTSMSFGSRHLASAITDYVKLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             + L+L ++ +++  +  D A+R+   +   +LI RKL        A+P YL+    P 
Sbjct: 121 TSVDLMLVDRAVNLVEERVDLAVRITNDL-DPNLIARKLAVCRSVVCASPEYLQREGVPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I++L   N +T                    P+  P    +  N    + +  + G+GI
Sbjct: 180 RIEDLSLRNCLTHSYFGKSLWR----FERDGEPVDVPVSGNISANEVSVLSRAALEGAGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+LP Y   D+     L  I+         +Y  Y    +    L++  +F+  + 
Sbjct: 236 AMLPTYYAADDIASGRLRAILTQSKPQELGIYGVYVSRRQMPLILRSMLDFLVGRL 291


>gi|270263679|ref|ZP_06191948.1| LysR family transcriptional regulator [Serratia odorifera 4Rx13]
 gi|270042563|gb|EFA15658.1| LysR family transcriptional regulator [Serratia odorifera 4Rx13]
          Length = 303

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 131/290 (45%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +LR F  +   GSF  AA  L ++ S++S+ +  LE+ +G++L  R  R +  T+ G
Sbjct: 5   EFAELRAFAAIVEHGSFARAAVHLGMTASALSQTLRNLESRLGLRLLNRTTRSVAPTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +++         +++    +      +P+G+LR+  T     + L   +  F   YPDI 
Sbjct: 65  AQMLARLLPAIAEIDAAVEQAVNQRQQPTGRLRLNVTRIAAMHFLAPLIAPFHRQYPDIL 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L ++++ +DI     D  +RL + ++   +  +    + M   A+P YL    +P + 
Sbjct: 125 LDLNVEDRLVDIVAGGFDAGVRLHEKLEKDMVAIKLGEDLRMRVVASPAYLARHGQPQAP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           +EL +H  + F    P     + W    D    +  +   + V+    +++  +   GIA
Sbjct: 185 RELRQHLCLNF--RWPTNGNLYRWEFERDGETLDIAVEGPVIVDEPEILVRAALDSVGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L ++ V     +  LV +++    P    Y  YP   +    L+AF +F
Sbjct: 243 YLFEHQVAAALADGRLVPLLDAWTPPFPGFYLYYPANRQMPRPLRAFIDF 292


>gi|62289046|ref|YP_220839.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82698983|ref|YP_413557.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus
           2308]
 gi|237814534|ref|ZP_04593532.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|254690370|ref|ZP_05153624.1| transcriptional regulator LysR [Brucella abortus bv. 6 str. 870]
 gi|254694858|ref|ZP_05156686.1| transcriptional regulator LysR [Brucella abortus bv. 3 str. Tulya]
 gi|254696487|ref|ZP_05158315.1| transcriptional regulator LysR [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731400|ref|ZP_05189978.1| transcriptional regulator LysR [Brucella abortus bv. 4 str. 292]
 gi|256258624|ref|ZP_05464160.1| transcriptional regulator LysR [Brucella abortus bv. 9 str. C68]
 gi|260755916|ref|ZP_05868264.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260759140|ref|ZP_05871488.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260760864|ref|ZP_05873207.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884939|ref|ZP_05896553.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|261215191|ref|ZP_05929472.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|297247462|ref|ZP_06931180.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196]
 gi|62195178|gb|AAX73478.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82615084|emb|CAJ10013.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Brucella melitensis biovar Abortus 2308]
 gi|237789371|gb|EEP63581.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|260669458|gb|EEX56398.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260671296|gb|EEX58117.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676024|gb|EEX62845.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260874467|gb|EEX81536.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|260916798|gb|EEX83659.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|297174631|gb|EFH33978.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196]
          Length = 297

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G
Sbjct: 5   NLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++ +   ++ E   +PSG +R++      Q++L   L+ FL  +PDI 
Sbjct: 65  ERLLAQVGPALAEIASGFAQIGELRERPSGTVRLSADEYAIQSVLWPALERFLAEFPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   
Sbjct: 125 IELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   E F W  +   + I       L   S   ++Q C  G G+A
Sbjct: 185 QDLSDHDCINL--RLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACFAGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP        ++  LV ++ D        +  YP   ++   L A    +
Sbjct: 243 YLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEAL 293


>gi|209918150|ref|YP_002292234.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|209911409|dbj|BAG76483.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|324019008|gb|EGB88227.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
 gi|324116113|gb|EGC10037.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
          Length = 302

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYEQLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDTLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + ++  ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELEAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED  T        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|114328437|ref|YP_745594.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316611|gb|ABI62671.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 305

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  LR F  VA   SF+ AAEQL +S S++S+ I GLE  +GI+L +R  R ++LTE G
Sbjct: 9   EFGALRAFAAVAEQRSFSRAAEQLGVSSSALSQLIRGLEERLGIRLLHRTTRSVSLTEAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    +     L     + + ++  P+G +R+          +   L      +PDI 
Sbjct: 69  AALLGDIAPAIDSLTGALEQARTAAKLPAGTVRLHCFHAAADRFVVPILPRLARAFPDIT 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L +D+  +DI     D AIR+ + I+   +  R    I   A AAP YL     P + 
Sbjct: 129 LDLTIDDTVVDIVGSGYDAAIRIGEVIERDMVALRLGEDIRQLAVAAPAYLAEHGVPQTP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L +H  I +    P     + W                L  +S   ++   + G GIA
Sbjct: 189 KDLLQHRCIRW--RWPGQPGPYAWEFFEKGHWFSVAVEGPLITSSRAVMVDAALAGIGIA 246

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L +  V D      LV ++ +   P    Y CYP+  +    L+A  + I
Sbjct: 247 FLKEESVVDAFAQGALVPLLAEWSVPFPGYYLCYPQQRQMAPALRAVIDMI 297


>gi|315180678|gb|ADT87592.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 315

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 121/291 (41%), Gaps = 7/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  SFT AA  L +S S +S+Q++ LE  VGIKL  R  R  T+TE G   
Sbjct: 8   QMVMFAALIKHQSFTAAARNLGVSVSHVSKQLAQLEASVGIKLVQRTTRSFTVTEAGESF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R   ++   +     EL     + SG LR+  +   G   +   L+E    YP++Q+++
Sbjct: 68  YRHCEQLVALVSDADNELVNQREEVSGLLRLGLSQSFGSLHVLPALEELRQQYPNLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  ID+  +  D  I   + +     I ++L        A+P YL +   P    +L
Sbjct: 128 HLFDYKIDMLSEGLDLWITSNEHLP-EGYIAQRLAECKFVVAASPDYLLHHSTPQLPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN + +                 ++ +         V+   ++    V G GIA L  
Sbjct: 187 LDHNCLIYRSWDRDYTRWA--FRNREQQLSIKVSGNYSVDLAEAVRDAAVSGWGIAYLAT 244

Query: 247 YIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y+++D      L++++ D         Y  YP       K  A   F+  K
Sbjct: 245 YLIRDEFRTGKLIQLLPDWQASQNMPFYAVYPSRQHLPKKTSAVIEFLKQK 295


>gi|76817385|ref|YP_335167.1| transcriptional regulator [Burkholderia pseudomallei 1710b]
 gi|76581858|gb|ABA51332.1| transcriptional regulator [Burkholderia pseudomallei 1710b]
          Length = 431

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 109 MDM-LDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 167

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    P
Sbjct: 168 ESGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNP 227

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 228 DVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTP 287

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L KH  +          E        D  +     +  Q N   ++      G G
Sbjct: 288 TTPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRG 347

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F + +
Sbjct: 348 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHL 400


>gi|78067785|ref|YP_370554.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968530|gb|ABB09910.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 320

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + + 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +L
Sbjct: 127 LSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPATIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +                A   R         L VN    +    + G+GIALL  
Sbjct: 187 AHHNYLRRDSNSTMLDSLVIDAAAASRVNLN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIESGRLVPVLLDAVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|238798255|ref|ZP_04641740.1| LysR-family regulatory protein [Yersinia mollaretii ATCC 43969]
 gi|238717893|gb|EEQ09724.1| LysR-family regulatory protein [Yersinia mollaretii ATCC 43969]
          Length = 305

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 129/294 (43%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T 
Sbjct: 1   MDQIQAMRIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  ++   ++    E          ++P GK+RI     L +N++   L +F   YP+
Sbjct: 61  EGTLYYQRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALSDFYQRYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L  ++  ID+  +  DC +R   P     L  R +        A+P YL     P+
Sbjct: 121 ITLILGANDSTIDLMREGVDCVLRAWLP-HDEQLAVRNIGQQPQITCASPAYLAKYGVPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S+ +L  H  + +   + +   D+    TV   +    + S L VN   + +   V G G
Sbjct: 180 SLDDLAGHQAVGYFSQLTQ--RDYPLEFTVQGKVETRELPSILSVNGADAYIAAGVAGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +   P   ++       L+ ++     P+  ++  +P       +++   +++ 
Sbjct: 238 LIQAPTQGIQSQLAQGELIEVLPHCPPPAMPLFIMFPPGRFLAPRVRVLIDWLI 291


>gi|107023899|ref|YP_622226.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690985|ref|YP_836608.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170734320|ref|YP_001766267.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105894088|gb|ABF77253.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649074|gb|ABK09715.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169817562|gb|ACA92145.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 320

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + + 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +L
Sbjct: 127 LSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +                A   R         L VN    +    + G+GIALL  
Sbjct: 187 ANHNYLRRDSNSTMLDSLVIDAAAASRVSLN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIESGRLVPLLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|330958769|gb|EGH59029.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 290

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E+  G +L +R  R L LT  G     
Sbjct: 4   RVFIAINERGSLIAAAEALDMSRAMVTRYLAQMESWAGARLLHRTTRKLGLTASGQVTLL 63

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L Q +L   +  +L  YP   + L +
Sbjct: 64  RCQQLLELADAVPLAADTQVDEPRGMLRIACSQSLAQAVLAPAVTAYLQRYPGTSVDLHI 123

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   +LI R L   +    AAP YL     P   QEL+ 
Sbjct: 124 GNETVDLVSERIDLAIRITNQL-DPNLIARPLGHCNSVVCAAPAYLAAHGTPSRPQELNS 182

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E          P+  P    L  N  + +++  V G+GIAL P + 
Sbjct: 183 HNCLTYSYFGKSLWE----FTHQQSPLSVPVGGNLSGNDSVVLLEAAVAGAGIALQPVHS 238

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+ +M D    +  ++  Y      +  L+   +F+  
Sbjct: 239 AAPLIASGQLIALMPDYQPKAMGIHAIYTSRHHQSATLRTMLDFLAE 285


>gi|301168380|emb|CBW27970.1| putative LysR family transcriptional regulator [Bacteriovorax
           marinus SJ]
          Length = 306

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 3/288 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L    +VA + SF  AAE L++S  +ISR I+ LE  +G+ L  R  R + LT  G+
Sbjct: 6   FDGLIALKLVAENQSFKAAAELLNISTPAISRIIAQLEESMGVTLLTRTTRSVRLTNAGA 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 S    ++   Q  ++    KPSG LRI T +   Q+ L+  +K+FL+ YP+IQ+
Sbjct: 66  IFLEQVSPAMEQILKAQDFIKTYGEKPSGPLRINTPVIFYQHYLKDFIKKFLIKYPEIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D++  +I     D  IR    I    +  +    I     A+P+Y K    P+  +
Sbjct: 126 EIFSDDQATNIFERGFDAGIRADDIIAKDLIAFKLFGPIDFVTVASPNYFKEFGRPMHPK 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN IT        + D        +         L +N+  +I Q  ++G GI   
Sbjct: 186 DLLEHNCITLRFGSGSGIYDKWEFEEKGKEFNVKIHGNLILNNSENIRQAALIGQGIVYT 245

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               V+++     L  ++      S   Y  YP   + +  L+AF  F
Sbjct: 246 EKGCVEEDLKAGRLEIVLNKYKCQSTGFYLYYPHKTQISPALRAFIEF 293


>gi|241763319|ref|ZP_04761375.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241367471|gb|EER61770.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 303

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 134/290 (46%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  SFT AA QL +SQS++S  I  LE  +G++L  R  R ++ T  G
Sbjct: 5   NYNDLLAFMAVAREQSFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     + E S KP+G +RI TT    + +L   L + L  YPDI+
Sbjct: 65  ERLLQNVAPRFQEIEAELTAIGELSDKPAGTVRITTTEHAARTVLWPKLAKMLSKYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I++++  +I  +  D  +RL   + S +        + +   A+P YL +  EP + 
Sbjct: 125 VEMIVESRLAEIVAERYDMGVRLGDTLTSDTTAVCISADLPVAIVASPAYLAHHPEPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H  I    +    +  +  L    + I       L  N  + I+   + G G+  
Sbjct: 185 QDLIHHACINLRLMSRGGLYAWE-LKKGKQQINAHVEGQLVFNEPMQILDAALSGFGLGY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + + +       L +++ D        + CYP   + +  +    + +
Sbjct: 244 VLEDMAQPYIAQGRLRQVLTDWCPSFPGYHLCYPNRSEPSRAMSVLIDAL 293


>gi|148548391|ref|YP_001268493.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148512449|gb|ABQ79309.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 299

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 131/300 (43%), Gaps = 13/300 (4%)

Query: 3   FDWD----KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
            D+     ++ +F  VA++GS + AA  L L+ S++SR ++  E  +G +L  R  R LT
Sbjct: 1   MDFSGRSGEMEIFVKVAQAGSLSAAARALGLTPSAVSRILARTEQRLGTRLLLRTTRALT 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT +G    R    V   +   +  + +    P G+LR++  +   +  +   L  F   
Sbjct: 61  LTPEGEAYLRGARRVLADMLEVEEAITDQ-GVPRGRLRVSAALGHARLTVVPLLAAFSAR 119

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP + + L L ++  DI    AD A+R    +  SSL  R +        A+P YL+   
Sbjct: 120 YPQVLVDLTLSDEVADILGGQADVALRFGH-LPDSSLSARAIGETGQVVVASPDYLQRHG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            PL  ++L +HN + F     + M D+                 ++ +S  ++ Q   LG
Sbjct: 179 TPLEPEDLARHNCLRFN--FRRAMPDWP-FHRDGHTFSLKVKGNIECSSGEALAQLARLG 235

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +G+A +  + V D+     LV ++E         ++  +        +++ F +F+  + 
Sbjct: 236 AGVARIGTFTVADDLASGQLVPLLEAYNPGDREPIHAVFVGGPAMPARVRVFVDFLVEQL 295


>gi|302187121|ref|ZP_07263794.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 309

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 132/290 (45%), Gaps = 4/290 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF +VA  GSFT AAE+L+L+ S+IS+ I+ LE  +  +LF R  R L+LTE G 
Sbjct: 7   LKGIDVFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  + V   LE  +I L  +  +P GK+RI      G+  +   + +F+  +P +Q 
Sbjct: 67  TFYRTCTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPLSI 183
            +   ++ +D   +  D  +R+       + +  +   T  +   AAP Y+    EP ++
Sbjct: 127 HVSFSDRYVDPVHEGIDIVVRIGGSDAWPAAMAHQFFGTQKLIFCAAPEYVNQYGEPKTV 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +LD H  I +G      +  +                 + V      +   + G GIA 
Sbjct: 187 SDLDAHRCIGYGQNDGMAIPWYFKGRQPGDRERRIMHPHIAVGDGEGEVMAVLAGLGIAQ 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++V+   ++  LV ++ D+ T    +   +  + +   K+ A   ++
Sbjct: 247 LPTWLVQAHLNSGRLVEVLPDLATEGLPMNLVWLRSREALPKVSALVAYL 296


>gi|187928323|ref|YP_001898810.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|241662901|ref|YP_002981261.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|309782177|ref|ZP_07676907.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|187725213|gb|ACD26378.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240864928|gb|ACS62589.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
 gi|308919243|gb|EFP64910.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 309

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDHFKQLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTF 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        + + L   +  +    VK SG LR+      G+  +   + +F+  +PD
Sbjct: 61  EGSAFLEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFIETHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  DCAIRL   +  SSL+  +L        AAP YL+    P 
Sbjct: 121 VSMTLDLGDRVVDLVNEGFDCAIRLGD-LPDSSLVSIRLWENRRVVVAAPSYLERRGVPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
            +++L  HN + FG           W+          ++S  ++      + ++C+ G G
Sbjct: 180 QVEQLSTHNCLAFG---ASANVQRGWVFQQGGKAVTVKVSGTMECTDGAVLREWCLQGYG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A    + V  +     LV +++    P   ++  +P+      +++ F +F+
Sbjct: 237 LAWRSWWEVGHDIATGKLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLFIDFL 289


>gi|299532623|ref|ZP_07046012.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298719426|gb|EFI60394.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 313

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 135/297 (45%), Gaps = 12/297 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR+++ LE  +G++L  R  R L+LT+ G
Sbjct: 3   DLNDMLYFVEVVERGGFAAAGRALGIPKSRLSRRVAELEAHLGVRLLQRTTRKLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +          + E   +P G +R+   + L Q +L   + EFL   P +Q
Sbjct: 63  ETFLRHGQAMRDAALAASDAVAEVQTEPRGTIRVTCPVTLAQTVLGELMPEFLKRCPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +++  +  D A+R+R  ++ S S++ ++L +      A+P  L+    P S
Sbjct: 123 VEMQVTNRPVNLVEEGVDVALRVRATLEDSGSMVVKRLDSSRQILVASPDLLQRQGTPRS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGS 239
           +++L          +    ++  + L  V     E R+       V+  L++    + GS
Sbjct: 183 LEDLQ-----LLDSMAMTAVDGHSSLLLVGPEGKEHRLQLQPRYVVDDLLTLKFAALAGS 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+  LPDY+ +D      LV+++     P   V+  +P        ++ F +F+  +
Sbjct: 238 GMCWLPDYMCQDELTRGTLVQLLPQWAPPRGIVHAVFPSRRGLAPAVRHFLDFLGER 294


>gi|327192070|gb|EGE59051.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 308

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 131/288 (45%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R LTLTE G+ 
Sbjct: 5   EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKALGGTLLHRTTRKLTLTEDGAV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++E    ++ E     SG +RIA  +  G+  L   L  FL  +PDI + 
Sbjct: 65  FLERAGRIVREIEEAAADMAERRGALSGPIRIAAPVTFGRMHLGPALYPFLAQHPDIHLT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D++ +D + D  D  IR   P+  S L+  KL        AAP YL     P S+ +
Sbjct: 125 LDIDDRRVDAASDGYDAIIRNG-PLADSRLVAWKLAPSRRLLCAAPDYLARQGMPTSLAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H  I + +   + + D+    T +  I       L +N+   +    + G GIALLP
Sbjct: 184 LNNHRGIFYTN---RGVADWR-FQTPEGAILVRAKPALGINNGDMLRDAAIAGLGIALLP 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +I         L  I       +  +Y  +P     + KL+A  + +
Sbjct: 240 AFIAGPAIREGLLAEIDVGHRPEAEFIYMAHPAGRNPSAKLRAIADHL 287


>gi|117625373|ref|YP_855415.1| transcriptional activator TtdR [Escherichia coli APEC O1]
 gi|331648861|ref|ZP_08349949.1| HTH-type transcriptional activator TtdR [Escherichia coli M605]
 gi|115514497|gb|ABJ02572.1| putative transcriptional regulator YgiP [Escherichia coli APEC O1]
 gi|331042608|gb|EGI14750.1| HTH-type transcriptional activator TtdR [Escherichia coli M605]
          Length = 328

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 27  KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 87  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 146

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 147 FELFDRQIDLVQDNIDLDIRINDAIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 205

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 206 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 262

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LVR++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 263 SEWDVLPFLESGKLVRVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 312


>gi|323499380|ref|ZP_08104356.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315565|gb|EGA68600.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 303

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 136/293 (46%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +++L+VF  + + GS   AA +L ++  S+S+ +  LE  VG+ LF R  R + LTE G
Sbjct: 5   TYNQLQVFQAIVQEGSIRGAARKLAMAAPSVSQSLKLLENNVGLTLFNRTTRKIELTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             LH  T      L      +QE + +PSGKLRI     +    L+    EF   YP I+
Sbjct: 65  RLLHERTLAAMESLNYALESVQELTDEPSGKLRITLPKFVYNTYLKSRFAEFCRQYPQIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLS 182
           +++ + +  +DI  +  D  IR    ++   ++ RKL   +    +A+P YLK    P S
Sbjct: 125 LEISISDATLDIISEGIDLGIRFGNILE-EGMVARKLTPPMKEALFASPSYLKQYGVPTS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L +H LI +  +        N L    +  G      L VN    ++     G GI 
Sbjct: 184 LEDLAQHKLIQYRFITSNQYAPLN-LIEDGQQTGVEIPYGLVVNDTDLMIDAAKEGLGIG 242

Query: 243 --LLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +LP    + ++ +LV ++E +     ++Y  +    +   +++   +++  
Sbjct: 243 RLVLPSLEHELESGDLVPVLEPMWPTYPSLYLYFSRNSQKVKRVRVLIDYLVA 295


>gi|326315288|ref|YP_004232960.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372124|gb|ADX44393.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 325

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 125/299 (41%), Gaps = 13/299 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D       F  VA  GS T AA    ++ + + R++  LE  +G+KL  R  R ++LT 
Sbjct: 1   MDKLKAFESFVSVATRGSLTAAARAEGVAPAIMGRRLDALEEHLGVKLMVRTTRRISLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +   +   +  +     + +G LRI      G+  +   +  F  L+PD
Sbjct: 61  EGSAFLEDCQRLLADVAEAEASVSVGGARATGHLRITAPAGFGRRHVAPLVPLFRDLHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P 
Sbjct: 121 VRISLNLSDRVVDLAGEGFDCAVRVGD-LPDSSLVSVRIADNRRLCVATPAYLERHGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQY 234
              EL +H  +       +    + +      P G P           L  +    +  +
Sbjct: 180 HPSELARHACLMLSSDASQT-RGWAFRMPAADPGGAPGDVVHVKPTGPLDCSDGQVLHDW 238

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           C+ G GIA    + V+       LV ++ED   P   +Y  +P A     +++ + +++
Sbjct: 239 CLGGWGIAWRSTWEVEAEIAAGRLVAVLEDFAAPPNGIYVVFPHARHLPLRVRLWIDYL 297


>gi|222872209|gb|EEF09340.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 128/289 (44%), Gaps = 8/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  VA  GS + AA    ++ + I R+I  LE  +G+KL  R  R +TLT +GS 
Sbjct: 15  RLLETFVSVASRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTFEGSA 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  + + L   +  +    VK SG LRI      G+  +   +  F+  +PD+ + 
Sbjct: 75  FLEDCQRILNDLHNAEASVSAGGVKASGHLRITAPAGFGRKHVAPLVPLFIESHPDVTLT 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  DCAIRL   +  SSL+  +L        A+P YL     P   +E
Sbjct: 135 LDLSDRVVDLVNEGFDCAIRLGD-LPDSSLVSIRLAENRRVVVASPEYLARAGTPTQPEE 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +HN + FG           W+   D      ++   ++      + ++C+ G G+A  
Sbjct: 194 LARHNCLAFG---ASANVQRGWVFQQDGRATTVKVGGNMECTDGAVLHEWCLGGYGLAWR 250

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V     +  LV ++++   P   ++  +P+      +++ F + +
Sbjct: 251 SWWEVGQEIASGRLVTVLDEFQAPPIGIHAVFPQRKHLPLRVRLFIDHL 299


>gi|37680602|ref|NP_935211.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37199350|dbj|BAC95182.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 295

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 139/294 (47%), Gaps = 9/294 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE
Sbjct: 4   NMKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDAVNLRLLNRHARKLSLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  R  S +  +L  T  E+ +     SGK++I+T  +L + ++   L  F+  YP+
Sbjct: 64  AGERFFRECSPLLQRLTNTAEEITDECRGASGKIKISTPYNLTKRMMMPMLNGFMSQYPE 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L  ++    +     D   R+  P + SSLI RK+ ++     A+P Y+     P 
Sbjct: 124 INIELTTESNADQLDPTEWDVIFRVG-PQRDSSLIARKIGSVKDILVASPEYVNAHPMPT 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H L+         +  +  + +    +        Q N+   +   C  G GI
Sbjct: 183 HAEDLHDHFLL-----KGHPLLKWTLINSKGETVVNVDRGRFQANALNVVRSACSEGLGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            L+PD ++K+   + +LVRI+ D       +Y  Y        K++ F +++  
Sbjct: 238 TLMPDVMIKEYIADGSLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDYVIA 291


>gi|153826387|ref|ZP_01979054.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|149739865|gb|EDM54056.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
          Length = 309

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  V ++L  R  R ++LT
Sbjct: 14  MLNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLT 73

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP
Sbjct: 74  TEGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYP 133

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N    
Sbjct: 134 KVNFDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENSPPI 192

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +IQ+L++H+ + +   +    +                 S    NS L +M     G G
Sbjct: 193 HTIQDLEQHDWV-YLTRLNLPNQTLTLTNQEGVQHQVKFHSKHSSNSPLGVMTMVQNGLG 251

Query: 241 IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +  +++    + +LVR+  D    S T+   YP       +++ F +++ 
Sbjct: 252 VGSIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYLV 304


>gi|121592593|ref|YP_984489.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120604673|gb|ABM40413.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 305

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 134/290 (46%), Gaps = 6/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++ +F  VA   SFT AAE L + ++S S  +  LET++G +L +R  R + LT+ G 
Sbjct: 4   FDRMHIFVRVAELASFTQAAEALGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    ++   ++  Q   Q  +     G++RI  +  + +N++   L E L  +P ++
Sbjct: 64  AYYERCKDLLADVDELQSMFQHPAGAGLKGRVRIDMSTGMARNVVVPRLPELLAPHPGLE 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L    + +D+  +  DC +R    +  SSL+ R L    +   A+P YL+    P S+
Sbjct: 124 LELSSTERRVDVVREGFDCVLRTGAVV-DSSLVARPLGLARLVNCASPAYLRAHGTPRSL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H L+ F + +      F  +      +  P    L VN+  + M  C+ G G+  
Sbjct: 183 ADLPGHRLVHFVNTLGARSAGFEAVVD-GALVLTPMQGALTVNNAEAYMAGCLAGLGLIQ 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P   V D     +LV ++  +  P   +   Y        +++   +++
Sbjct: 242 VPHLGVVDLLARGDLVEVLPQLAAPPMPLTLMYANRRNLPRRVRTVMDWL 291


>gi|134295812|ref|YP_001119547.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134138969|gb|ABO54712.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 313

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 123/299 (41%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + + A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 12  PLDLLDVGLFVRAALLANVSAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    E  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 72  DGEVFMARADALLSAAEAARACVGHGRSEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPS 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  D  D AIRL   ++ S+L+ R+L         +P YL     P 
Sbjct: 132 VSLDLRLSDEIVDLVDDGYDVAIRLGA-LKDSTLVARRLAANRRVLCCSPAYLAERGTPR 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL +H  +  GD             T   P+       L  ++  +I +  V G GI
Sbjct: 191 HPAELAQHECVILGDQRDWS------FVTPQGPLTVRVGGRLVASNGEAIREALVDGFGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     +  LV +++D        V+  YP       K  AF  F+     D
Sbjct: 245 AIKSTWDVGPLLASGALVTVLDDYPFADDVAVWAVYPSRAHVPLKTLAFIGFLAEHFGD 303


>gi|330960836|gb|EGH61096.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 305

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      ++VF  +A  GSFT  AE + + +  ++R I  LE  + ++LF R  R + LT
Sbjct: 1   MDL-LQSMQVFVKLAELGSFTKVAEAMQVGRPHLTRTIQDLEASLDVRLFQRTTRSVKLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G + +         L  T      +     G+LRI       Q      L+ F   +P
Sbjct: 60  AEGQRFYERVKGNLADLAETTSMFDRNGSALRGRLRIDIPAAFSQRSFMETLRSFTQAFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ L + ++ +D+  +  DCA+R+ + +  SSL+ RK+    M   AAP YL     P
Sbjct: 120 DIKVVLGVTDRTVDLVAEGIDCALRIGE-LPDSSLVVRKIGKATMVTCAAPSYLYAFGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L +H  ++F  L         W  +++   +  P    + VN   + +Q  + G 
Sbjct: 179 QTLDDLKRHCGVSF--LSGHNHRPLPWHFSLNGEDLPYPARGGITVNESNAYVQCGLAGF 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI   P   V+    +  LV ++E        V   YP       +++AF  ++  
Sbjct: 237 GILQAPGITVESFLASGGLVEVLEAFRPLPRPVSVLYPSRTHLAPQVQAFVEWLRA 292


>gi|170702039|ref|ZP_02892956.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133049|gb|EDT01460.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 322

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 127/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASRDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  +          E        +  + E + +  QVN   ++      G G
Sbjct: 180 KTPDDLPNHVCLRLDTPASPASEWRLERGDDEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDLREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|167589471|ref|ZP_02381859.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 313

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 132/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP 
Sbjct: 61  AGQRYLDRCQRVLAYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRERYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S L+ ++L T+H    A+P YL+    P
Sbjct: 121 VAVELTLSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGTVHSVLCASPAYLREHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L+ H  +     +    + ++      R   E  +   QVN   ++      G G
Sbjct: 181 QTIKDLEAHACLQIVTPV-FPRDRWHLDGPDGRETFELPLPDFQVNVADALGAALRAGLG 239

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP         +  LVR++ +      TVY  YP       K++ F  F+  
Sbjct: 240 IGSLPMSTAVPALRSGALVRVLPEYRLQKLTVYTLYPSRQYLDAKIRTFVEFLRE 294


>gi|162453701|ref|YP_001616068.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161164283|emb|CAN95588.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
          Length = 312

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D++  F  VA  GSFT AAEQL + +S++SR ++ LE  + ++L  R  R + LTE G 
Sbjct: 18  LDEIAAFARVAELGSFTAAAEQLGVPKSTVSRAVTRLEDGLQVRLLQRSPRAVALTEAGR 77

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     +     L      L     +P G +R++   D G++ L   L EF   YP + +
Sbjct: 78  RFFGDVAPHIAGLRDAAQALDAYQGQPQGTIRLSAPPDGGESFLGEMLVEFGARYPLLSL 137

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +  + +D+  +  D A+R  + +  SSL+ RKL+  ++  +AAP YL     P + +
Sbjct: 138 EVDMSTRRVDLLREGFDVALRATRELPDSSLVVRKLLDSYVQLFAAPAYLARRGLPRAFE 197

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  + F     +  +  +    V   +   RI+    + +  I      G GI  L
Sbjct: 198 ELADHERVVFLPDARRGQQPVDGPRAVRDAMATGRIA---TDDFQLIRSLLRAGGGIGPL 254

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +      +  LV ++ +    + T+Y  YP A      +  FR+F+  
Sbjct: 255 PRVLAAPELASGRLVHVLPEWSQRAGTLYLVYPSARHVPRNVAVFRDFVLA 305


>gi|254255142|ref|ZP_04948458.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124900879|gb|EAY71629.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 315

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 132/297 (44%), Gaps = 6/297 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS D    +R+F  VA  GSFT AA++L ++ +  SR ++ LE  +  +L  R  R + L
Sbjct: 1   MSMDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLEAHLRTRLLNRSTRRIAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G +       +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   Y
Sbjct: 61  TDAGQRYLDRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P + ++L L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK   
Sbjct: 121 PSVAVELTLSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGEVHSVLCASPAYLKERG 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++++L+ H  +     I    + ++      R   E  +   QVN   ++      G
Sbjct: 181 TPRTVRDLEGHACLQIVTPI-FPRDRWHLDGPDGRETFELPLPDFQVNLAEALGAALRAG 239

Query: 239 SGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  +P         +  LVR++ +      TVY  Y        K++ F +F+  
Sbjct: 240 VGIGAVPMSTALPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 296


>gi|238896749|ref|YP_002921494.1| putative DNA-binding transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238549076|dbj|BAH65427.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 309

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R L LTE G 
Sbjct: 4   LKRMSVFAKVVELGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSLGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  + +    +L   +  P G LRI  +  + QN+L     + L  YP + +
Sbjct: 64  IYYQGCRRMLFEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLARITAKMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGSMPMVLCAAKSYLAQAGNPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  + +     +   +F  +A                N  ++++++   G GIA +
Sbjct: 183 DLAGHAWLEYSV---RPDNEFVIIAPEGISTRLTPQGRFVTNDPMTLVRWLTAGVGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  + +++     L  ++    +    VY  Y E  K   K++   N++  
Sbjct: 240 PLMWAIEEINRGELEILLPSYQSDPRPVYALYTEKDKLPLKVQVCINYLTE 290


>gi|187923524|ref|YP_001895166.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714718|gb|ACD15942.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 298

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 144/300 (48%), Gaps = 8/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L+ + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVTVIDSGSITAAAEKLNQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGETFLQRARAILDAMEEAEESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  + + +D+     D AIR+ + +Q S+L  R L T  +   A+P YL    EP
Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRIGE-LQDSTLHARALGTSKLRVLASPAYLAEYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            S++ L +H LI F    P+ +  +             +I   +  +S  ++ Q  + G 
Sbjct: 180 KSVEALREHRLIGF--TAPEHLNRWPLREGRKGGAESLKIEPAITASSGETLRQLVLSGW 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA L D++   +     LV I+ +V+      V   Y ++    G+++ F +FI  + +
Sbjct: 238 GIACLADFMSAADVREKRLVPILGNVLADERQRVSAVYYQSASLAGRVQCFLDFIAARVK 297


>gi|150376758|ref|YP_001313354.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150031305|gb|ABR63421.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 315

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +RVF  V   G+ + A     ++ +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNVRVFVRVVELGTLSAAGRDQRVTPAVASNRIKELERHMGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   +   +  + + S  P G L+I   + +G+ L+   + EF   YP
Sbjct: 60  EHGRVFYEGAVKILEAVNEAESAIADLSRNPKGALKITAPLGIGRRLIAPGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   ++ S+L  R ++        +P Y +    P
Sbjct: 120 DIEVRLRLSDHNVDILAEGVDIAFKLG-ILEDSNLRMRGIMNCDRVLCGSPRYFERRGTP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S  +L    H+ +      P   E +  L T D             +    + Q+ + G
Sbjct: 179 SSPDDLLSQSHDCLLL--RYPGSKEYYWTLQTPDGVRKFEVAGPYDSDDGDVLTQWALDG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P + VK   D   LV I+E+       +   YP       K++   +F+  + +
Sbjct: 237 RGIVNKPLFEVKHYIDEGLLVPILEETPPLGAQLAAIYPHKRFQDPKVRLMIDFMAERCQ 296


>gi|229521864|ref|ZP_04411281.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
 gi|229340789|gb|EEO05794.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
          Length = 296

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  V ++L  R  R ++LT
Sbjct: 1   MLNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP
Sbjct: 61  TEGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N    
Sbjct: 121 KVNFDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +IQ+L++H+ + +   +    +                 S    NS L +M     G G
Sbjct: 180 NTIQDLEQHDWV-YLTRLNLPNQTLTLTNQEGVQHQVKFHSKHSSNSPLGVMTMVQNGLG 238

Query: 241 IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +  +++    + +LVR+  D    S T+   YP       +++ F +++ 
Sbjct: 239 VGSIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYLV 291


>gi|167622558|ref|YP_001672852.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352580|gb|ABZ75193.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 304

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 9/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F V+A  GSFT AAE+L  S+S +S+Q++ LE  +G+ L  R  R   LTE
Sbjct: 4   DLNLADVRAFTVIAEKGSFTIAAEKLGCSRSHLSKQLTQLERYLGVTLITRTTRAQRLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
           QG   +         +E    +  + +    GK+ I      +G+ ++   + +F+ L+P
Sbjct: 64  QGRFFYERCQHALDIMEQAVAKTVDDAHNLQGKININCVGGYIGEEIVNQLVNDFMTLHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ L   ++ +D+ +D  D   R+ + ++ S L+ RKL+ I     A+P Y+     P
Sbjct: 124 NIQVHLDFSSQRVDLVLDEFDLVFRMGE-LEDSGLVARKLMDIANCTLASPRYIAKHGRP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL  H  +T           ++  +             L   +   +    + G+G
Sbjct: 183 EHPKELKHHACVT----GSVHHWSYHRRSNKSHKTEVTITGALLCKNGRVMKSSALAGNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  LP+           LV + +D       +Y  Y        +L+ F  F
Sbjct: 239 IVRLPEIYCSAELNAGTLVHLFDDWAISDTPLYLLYNRDQFQPARLRQFIEF 290


>gi|162449039|ref|YP_001611406.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161159621|emb|CAN90926.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 312

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 138/295 (46%), Gaps = 10/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  V    SFT AA +L +S+S +S +++ LE  +G +L  R  R LT+T+ G
Sbjct: 20  DLPALLCFARVVERRSFTAAAAELGVSKSMVSTRVARLEERLGERLLVRTTRKLTVTDAG 79

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+   + V   LE     ++ +S    G++R+   +   Q  L   L  FL   P   
Sbjct: 80  MNLYARCARV---LEEAAAAVRGASDADRGRIRLNAPVSFAQMYLAEPLARFLRASPGAH 136

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L+++ +D+  +  D AIR+ K ++ SSL+ R+L T  +H   AP YL+    P   
Sbjct: 137 VELMLNDRLVDLVEERVDLAIRITK-LKDSSLVARQLATTALHVVGAPGYLERRGRPEQP 195

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ + +  L    +ED          +  P    L  ++  ++ +  V G G+A+
Sbjct: 196 GDLLRHDCLRYLHL---RVEDEWRFYGAGGRVSVPVSGPLTASNGTALREAAVSGIGLAV 252

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP ++V ++     LV +++        +Y  +    +   +++     +    R
Sbjct: 253 LPRFMVDEDLAAGRLVTLLDAFAPRPMGIYAVHAAGRRPPARVRRLVEHLAAAFR 307


>gi|153216986|ref|ZP_01950750.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124113993|gb|EAY32813.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
          Length = 309

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  V ++L  R  R ++LT
Sbjct: 14  MLNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLT 73

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP
Sbjct: 74  TEGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYP 133

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N    
Sbjct: 134 KVNFDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPI 192

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +IQ+L++H+ + +   +    +                 S    NS L +M     G G
Sbjct: 193 NTIQDLEQHDWV-YLTRLNLPNQTLTLTNQEGVQHQVKFHSKHSSNSPLGVMTMVQNGLG 251

Query: 241 IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +  +++    + +LVR+  D    S T+   YP       +++ F +++ 
Sbjct: 252 VGSIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYLV 304


>gi|86144943|ref|ZP_01063275.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222]
 gi|85837842|gb|EAQ55954.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222]
          Length = 300

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 140/306 (45%), Gaps = 16/306 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  +++VF  +  SGS T AA++L LS+S +S  + GLE  +G+KL  R  R  +LT
Sbjct: 1   MKNELHRMQVFAQIVESGSITKAADKLDLSKSVVSHHLQGLEQHLGVKLLTRTTRRQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G + ++   E+   +   + E++ES    +G + I +   L  +L+   + EF+  +P
Sbjct: 61  DAGQRFYQRCLEMRKLMSLAEEEVRESCSDFAGTITITSPHTLMTHLIGPAMCEFMKSHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK--NCR 178
            I+ QL+ ++  +D+   Y D ++ +   +  S+    KL  +H      P YL      
Sbjct: 121 RIEPQLLANDMRVDLIEKYIDLSVTVGA-LPDSTSRAIKLGELHQVLCCHPDYLTKVQIP 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQY 234
           +P++  +L +++ I          E  N   + +   G+      +     +S  +I   
Sbjct: 180 QPITPSDLSQYDYIA------NQWEGINSQRSFEINKGKVSTYQFRASRIGDSVPTIRMM 233

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G GIA LP   ++++     LV I+        + Y  +   L+   +++AF   + 
Sbjct: 234 ALNGLGIACLPKQAIEEDLKKGTLVNILPKDQVLKASFYVVHNYGLQVPARIRAFIEHLK 293

Query: 292 LKARDW 297
             A  +
Sbjct: 294 QHAESY 299


>gi|330810350|ref|YP_004354812.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378458|gb|AEA69808.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 297

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 133/301 (44%), Gaps = 13/301 (4%)

Query: 3   FDWD----KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
            D++    ++ VF  VA+ GS + AA  L L+ S++SR I+  E  +G +L  R  R +T
Sbjct: 1   MDFNGRSGEMSVFATVAQEGSLSAAARALGLTPSAVSRIIARTEQRLGTRLLLRTTRAIT 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            T +G    R    +   +   +  + +    P G+LR++  +  G+  +   +  F   
Sbjct: 61  FTAEGEAFLRGARRILADMAEVEEAIADQ-GVPKGRLRVSAALGHGRLAIVPLVAAFSAR 119

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP+I + L L ++ +DI    AD A+R    +  S L  R++        A+P YL+   
Sbjct: 120 YPNIVVDLTLGDEVVDILGGQADVAVRFGH-LPDSPLTARRIGDTGQVVVASPDYLRRHG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P   ++L +HN + F     +    F       R         ++ +S  ++ Q   +G
Sbjct: 179 TPEEPEDLLRHNCLRFNFRRAEPNWPF---IRDGREFSLKVSGNIECSSGEALAQLARVG 235

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +GIA + ++ V ++    +L+ ++E         ++  +        +++ F +F+    
Sbjct: 236 AGIARIGEFTVSEDLQRGDLIPLLEAWNPGDREPIHAVFVGGSAMPARVRLFVDFLVEHH 295

Query: 295 R 295
           R
Sbjct: 296 R 296


>gi|172060447|ref|YP_001808099.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171992964|gb|ACB63883.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 301

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 135/296 (45%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE+++G++L +R  R  TLT+ G
Sbjct: 5   DLPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESQLGVRLLHRTTRQQTLTDDG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  + +      G LR+    +LG+  +   +  F   +P++ 
Sbjct: 65  AQFHAQVLRILAEVERAETLMSDRRGTVGGVLRVTAPGELGRLRIAPLIAAFQRRHPELI 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P Y+     P   
Sbjct: 125 VQLMLTDAIVDLLAHDIDIAVRIGS-LADSTMIARELAPNHRVLCASPSYVAAHGLPAEP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I  GD                  +     + L  N   +     + G+GIAL
Sbjct: 184 AELRAHRCIVMGDQPRADWR----FDGAHGVVAVEVTAALLTNDGGAARTLALEGAGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              + V    D   LVR++     P+  ++  YP       +++AF +F+  + RD
Sbjct: 240 KSIWDVGADLDAGRLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVDFLREQLRD 295


>gi|116694377|ref|YP_728588.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528876|emb|CAJ95223.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 296

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 129/289 (44%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +  SGS   AA  L L+ ++++  ++ +E  +G +L  R  R + +TE G   +
Sbjct: 1   MQVFCQIVDSGSMAQAARVLGLAPATVTGALARIEKRLGARLLDRTTRRIAVTEAGRLWY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +    +  ++  + +P G+LR+   + +    +  +L EF   +P I + L 
Sbjct: 61  KHAKRIIEQSHEAEDAVRRLASEPRGELRVTLPLGVALTFVYPHLDEFTARFPRISLDLQ 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D A+R  +P   S+   R L T      A+P YL +   P    EL 
Sbjct: 121 VSDRIVDLVANGFDLALRAGRPG-DSAFSARCLSTYRRVTCASPGYLASHGAPRHPTELA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + +          +    T    +  P       N   +++ +   G GI   PD+
Sbjct: 180 RHQCLIYRHEPHSSSWQYQVDGTT---MAIPVDGAFSSNESHALIAWAKAGKGITRQPDW 236

Query: 248 IVKDN---PNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +V+ +     L+R++E+      +    +Y  +P+   +  K++AF  F
Sbjct: 237 LVEQDLLSGGLIRLLEEYDEIGASEQPGIYAVFPKPRNHPRKVEAFVKF 285


>gi|152984456|ref|YP_001348586.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959614|gb|ABR81639.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 309

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 133/303 (43%), Gaps = 11/303 (3%)

Query: 1   MSFDWDKLRV-----FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M+  +D L++     F + A SGSFT AA Q  ++ +++SR ++ LE  +G++LF R  R
Sbjct: 1   MTRHFDDLQLGSLELFCLAAESGSFTAAANQAGVTPAAVSRSVARLEERLGVRLFVRSTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + L++ G   H+   +   +L         S +  SG LRI+       + L   L  F
Sbjct: 61  QMRLSDAGRDYHQQCRQALAQLLEAGHRASGSQLSASGLLRISVPTPYAHHRLLPALPRF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP +++ + +  ++ID + +  D AIR  +P   S+L+ R+L    +   AAP YL+
Sbjct: 121 RERYPSVEVDVHVSTRNIDFTEEGYDLAIRGSEP-ADSTLVARRLEEAELVLVAAPDYLR 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQY 234
               P  + +L +H  I F          +N L    RP+             YL+    
Sbjct: 180 RRGRPRHLDDLAEHECIQFERPSSGRRVPWNLLVD-GRPLAIATRGGYSCQEDYLAGTTL 238

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI     + V+   DN  L  ++          +  YP A     +++AF  F  
Sbjct: 239 ALAGAGIFQAYRFSVQRALDNGELEEVLPSHGGAHRPFFLLYPHARYLPQRVRAFVEFAV 298

Query: 292 LKA 294
            + 
Sbjct: 299 EQL 301


>gi|76810635|ref|YP_332567.1| LysR substrate binding domain-containing protein [Burkholderia
           pseudomallei 1710b]
 gi|126438962|ref|YP_001058046.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|134281239|ref|ZP_01767948.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|226194419|ref|ZP_03790017.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242314530|ref|ZP_04813546.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|76580088|gb|ABA49563.1| LysR substrate binding domain protein [Burkholderia pseudomallei
           1710b]
 gi|126218455|gb|ABN81961.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|134247545|gb|EBA47630.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|225933504|gb|EEH29493.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242137769|gb|EES24171.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 349

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 36  FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 95

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E       P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 96  AFYERCVRILEDIADAEREATHG-ATPQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 154

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 155 DIVLSDSLVDPLDERSDIAIRSGA-LDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 213

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+HN I                   +     P    L +    SI +  V G G+A L
Sbjct: 214 DLDRHNCIGLSGNAKAWP-----FVAEEGQRLLPSAGNLLLGDNESIREAAVSGLGLARL 268

Query: 245 PDYIVK---DNPNLVRIMEDVIT-PSFTVYFCY--PEALKNTGKLKAFRNFIFLKAR 295
             + V    D   LV ++E         +   +  P       ++ A  +F+  + R
Sbjct: 269 ARFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSE-HLPMRVHALLDFLKERIR 324


>gi|70729631|ref|YP_259370.1| LysR substrate binding domain-containing protein [Pseudomonas
           fluorescens Pf-5]
 gi|68343930|gb|AAY91536.1| LysR substrate binding domain protein [Pseudomonas fluorescens
           Pf-5]
          Length = 314

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 126/298 (42%), Gaps = 14/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR+F  V   GSF+  A +  L+ SSISRQI  +E  +G +L YRH R ++ TE G 
Sbjct: 9   FKALRLFIAVLDQGSFSAVARREGLAPSSISRQIQLMEQALGQQLLYRHTRAVSPTEAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      V  + E  +  LQE   +P+G +RI   +  GQ  L   L E    YP +Q+
Sbjct: 69  LLGHHARRVLAQWEEAEQALQEQQDEPAGLVRINAPVVFGQRHLSPWLGELHGRYPKLQL 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ ID   D  D   R+   ++ SS+  R L        A+P YL     P   +
Sbjct: 129 DIQQTDRYIDPLQDGTDLLFRIG-TLEDSSMQARLLAPQRYRVAASPAYLARHGTPQHPE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVLGSGIA 242
           +L +H  + +     +      W     R    P      L  N   ++ Q    G G+ 
Sbjct: 188 QLQRHQCLAYKGETGQQ----RWFFRQGRADWTPYSVKGPLTGNHADTLTQAAEQGLGLV 243

Query: 243 LLPDYIVKD---NPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + P +++ +      LV + ED           +   +P + + + K++   +F   K
Sbjct: 244 MFPSWLIGEALHQGRLVALFEDFDVATSLEPQQIAALWPGSRRLSVKVRTVIDFFVEK 301


>gi|73539470|ref|YP_299837.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122807|gb|AAZ64993.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 304

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 130/293 (44%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L++F     +  F+ AA +L L+ SS++R + GLE  +G  L  R  R +T+TE G+  
Sbjct: 6   ALKMFVETVDAKGFSAAARRLDLATSSVTRALDGLEASLGAVLLNRSTRQITVTEAGATY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +   +E     + +   +P G+LR++  +  G+  +   L  +L  YP +++ +
Sbjct: 66  YQRARRILDAVEEADALIADRGEEPVGQLRVSLPVAFGRRCIAPYLGGWLAKYPQLEVDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D ++RL  P    +++ R++        A+P YL++   P    +L
Sbjct: 126 TLTDDIVDLVGERVDLSVRLGSPASYDNVVAREIGRFRRRVVASPAYLESRGCPDDPVDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + F       +  F      D     P     + N+   +    + G+GI LLPD
Sbjct: 186 VNHRCLRFSYGTRDQVWTFR---QGDSETKVPVSGHFRSNNIDVLRDIALAGAGIGLLPD 242

Query: 247 YIVKDNPNLVRIMEDVITPSF-------TVYFCYPEALKNTGKLKAFRNFIFL 292
           +++ ++    R+M      S         +   Y    + + ++ AF +F+  
Sbjct: 243 WLIDEDIESQRLMPLFDAWSVNPDQASSAISALYLPNQRGSRRIAAFMDFLAA 295


>gi|33596478|ref|NP_884121.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33602227|ref|NP_889787.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33566247|emb|CAE37158.1| probable LysR-family transcriptional regulator [Bordetella
           parapertussis]
 gi|33576666|emb|CAE33743.1| probable LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 303

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 127/295 (43%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  GS + AA  L +S++ +SR ++ LE  VG++L +R  R L+LT 
Sbjct: 1   MDRLKAMQVFVEVADRGSLSAAAMHLGMSRAMVSRYLAELEAWVGVRLLHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS+       +   +   +  +     +P G LR+   +  G   L   + EF+  +P 
Sbjct: 61  AGSETLPRCRRMLEMVGDMREAVAAPDAEPRGLLRVTAAMSFGGAQLAEAVAEFVRRHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             I L+L ++ +++  +  D A+R+   +   +LI R+L        AAP YL+    P 
Sbjct: 121 ASIDLLLVDRAVNLVEERVDLAVRITNDL-DPNLIGRRLADCRSVVCAAPQYLQQHGAPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  HN +T                    P+  P    +  N    +M+  + G+GI
Sbjct: 180 RAEDLSLHNCLTHSYFGRSLWR----FERAGEPVEVPVGGNITANETDVLMRAALAGAGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +LP Y+         L  ++ D   P   ++  Y    +    L+   +F+  +
Sbjct: 236 VMLPTYLAAGQIAAGTLRPLLPDCAPPVLGIHGVYVSRKQMPLILRTMLDFLAER 290


>gi|317053419|ref|YP_004119186.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953158|gb|ADU72630.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 292

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 130/292 (44%), Gaps = 10/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++++  V  +GSF+ AA  L++ Q ++S+ I+ LE  + ++L  R   GLT TE
Sbjct: 1   MDRFQAMQMYVQVVDAGSFSAAARILNIGQPAVSKTIAQLEKHLDVRLLLRTTHGLTPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +        + E  +I  + +    +G LR+A      +  +  +L  F+  +P+
Sbjct: 61  AGQRFYERVRITLQQAEEAEIAARGADKGLTGILRVAAAPTFARLHVIPHLATFMAQHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ ++LD++ ID+  +  D  +R+   +Q S  + RKL T    A A   YL     P 
Sbjct: 121 LQVDIMLDDRPIDLISEGIDICLRMG-TLQDSGAVARKLATSRRSALATSEYLSRYGYPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H  + F  L           +  D          L +++   I    +   GI
Sbjct: 180 HPRELSQHEALIFSPLNDTWQ-----FSRKDEVENVSLQGRLHLSAAEGIRSAVLAHMGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  D++  +   +  + R++ D   P   ++  +P     T K + F  F+
Sbjct: 235 TVASDWMFSEEITDGTVERLVSDWTLPDIDLWAVFPGGRMATAKARQFAAFV 286


>gi|15838353|ref|NP_299041.1| LysR family transcriptional regulator [Xylella fastidiosa 9a5c]
 gi|9106824|gb|AAF84561.1|AE003998_3 transcriptional regulator (LysR family) [Xylella fastidiosa 9a5c]
          Length = 324

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 127/290 (43%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  +AR GSFT AA  L ++QS++S+ I+GLE  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLYFVTIAREGSFTRAAAHLGVTQSALSQAINGLEARLQIRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E+   EL E   KP+G +RI     + +  +   L   L  YPDI 
Sbjct: 65  ERLLNAIGHRFDEIESELDELTELRDKPAGTVRITCGDHILRTTILPKLTPLLREYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+  ++    DI  D  D  +R+   I    +       + M   A+P Y  +   P   
Sbjct: 125 IEFDVNYGFRDIVADRFDAGVRMGDTIDKDMIAVPIGPPLRMAIAASPEYFASHPVPKKP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN I         +  ++++    + +       L  N+  +++   ++G GIA 
Sbjct: 185 HDLLNHNCINMRMQTSGGIYVWDFMRR-GKQLNVRVDGQLIFNTTPNMVDAALVGLGIAA 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+       +   L+R++ED   P    +  YP   + +       + +
Sbjct: 244 LPEEEFAPHIEEGRLMRVLEDWCEPFSGYFLYYPSRRQPSPAFSLVVDAL 293


>gi|330863503|emb|CBX73620.1| HTH-type transcriptional activator aaeR [Yersinia enterocolitica
           W22703]
          Length = 297

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 128/288 (44%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE+E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLESELNVKLLNRSTRRIGLTEAGRIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + + L+
Sbjct: 61  QGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P    ++ 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEKPSDMT 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
             + + +         +F  +A                N   +++++   G+GIA  P  
Sbjct: 180 NFSWLEYSVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLKAGAGIAYAPLM 236

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 237 WVIEEIKRGEVEVLFKKYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 284


>gi|325923142|ref|ZP_08184832.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325546378|gb|EGD17542.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 297

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 5/294 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D +  L     + R GSFT AA +L +SQS++S  I GLE  +G++L  R  R +  
Sbjct: 1   MARDSFKDLLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEASLGLRLLTRTTRSVAP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L +  +  + ++E     L E    P+G +RI  T    + +L   L + L  Y
Sbjct: 61  TEAGERLIQTVAPRFAEIEEALSALSEMRDTPAGTVRITATDYAARAILWPKLSKLLRQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI++++++DN   DI  D  D  +RL   ++   +  R    + M   AAP YL     
Sbjct: 121 PDIKVEIVVDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMAIVAAPSYLARRPI 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + Q+L  H+ I         +  +  L    R +       L  N     +   V G 
Sbjct: 181 PKTPQDLTAHSCINLRMKTAGGIYAWE-LEKDGREVIVRVEGQLTFNGTYEALDAAVDGF 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA + + + + +     L  +M+D       ++  YP    ++       + +
Sbjct: 240 GIAFVQENLARPHLKAGRLRWVMKDWSPTWPGLHAFYPSRRHSSPAFNLVVDAL 293


>gi|323499599|ref|ZP_08104568.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315339|gb|EGA68381.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 294

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 136/288 (47%), Gaps = 7/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V + GSF+ A+  L +S +++S+ IS LE  +  +LF+R    LTLTE+G  L
Sbjct: 5   QLPIFIDVVKRGSFSAASRNLGVSPAAVSKSISQLEKHLKQRLFHRSTHSLTLTEEGRLL 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              T ++   L+       ++S +  GK+++   I  GQ L+   L EFL LYPDI++ L
Sbjct: 65  FERTVDLVEALDENVSLSIDASSEMKGKIKVNLPIHFGQTLVYPKLLEFLDLYPDIELDL 124

Query: 127 ILDNKDIDISMDYADCAI--RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             D++ ID+  +  D  I  R+    + S LI R+   + +    +  Y      P + Q
Sbjct: 125 HFDDRAIDLVENGFDLGIGNRIN---EDSRLIARQYYELQLTYVCSRSYADEHGIPETPQ 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  IT+       +  +N++    +P+     + L VN+  S       G GI  +
Sbjct: 182 QLIDHECITYRSPTTGRINPWNFVDQ-GKPLQITPEARLVVNNPNSAYLAAKAGFGITAI 240

Query: 245 P-DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              Y  K   +LV I+ +    S  V+  YP       +++   +++ 
Sbjct: 241 SQSYFEKGEIDLVSILNEFQPNSSPVWLYYPSRTYLPIRVRKLIDYLM 288


>gi|288935124|ref|YP_003439183.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889833|gb|ADC58151.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 303

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 133/289 (46%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F VVA+  +FT AA++L +SQS++S+ +  LE ++GI+L  R  R +  TE G
Sbjct: 5   NLNALAAFMVVAKEQNFTRAAKRLGVSQSALSQTVRVLEAQLGIRLLNRTTRRVVPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          ++   + L E   KP+G +R+  T    +++L   +   +  YPDI+
Sbjct: 65  ERLLASVGPQIEDIQRQLMVLSELRDKPAGTIRLTATEYAAESILWPAVSRLVKKYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ D    DI  D  D  +R  + I    +  R    + M    +P Y  N   P++ 
Sbjct: 125 VEILTDYGLTDIVRDRFDAGVRPGETIAKDMIAVRIAPDMRMTVAGSPDYFSNRHVPITP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL +H  I     +      + W    D      R+   L  N+   I++  + G G+A
Sbjct: 185 QELTEHCCINL--RLSGHGGLYAWEFEKDGRELNVRVDGQLVFNTGSMILKAALEGRGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP+  ++    + +LVR++ED   P    +  YP   + T       +
Sbjct: 243 YLPEGQLEPYIASGDLVRVLEDWCEPYSGYHLYYPGHRQPTPAFSLLVD 291


>gi|206563571|ref|YP_002234334.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039611|emb|CAR55579.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 322

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVKEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H  +          E     +  +  + E + +  QVN   ++      G G
Sbjct: 180 QTPDELPNHVCLRLDTPASPAGEWRLERSDGEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|158340510|ref|YP_001521504.1| LysR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310751|gb|ABW32365.1| transcriptional regulator, LysR family [Acaryochloris marina
           MBIC11017]
          Length = 296

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 78/286 (27%), Positives = 136/286 (47%), Gaps = 8/286 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  V  +GSFT A   L+  ++ +SR +S LE  +G++L  R  R L +TE G  
Sbjct: 2   ESLEIFRAVVDAGSFTAAGGVLNKDKAHVSRVVSRLEKRLGVQLLKRSTRRLNITEIGRD 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +   LE T+  +  +  +P G LR+    + G   +   + E+L  YP+++++
Sbjct: 62  FYERACGILAALEETEASIAHAQGEPRGVLRVTAGAEFGPMRVNYWIAEYLKRYPEVRVE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++ +D+  +  D AIR+  P+  S L  R L  I    YA+P Y     EP S++ 
Sbjct: 122 ADFSDRIVDVIHEGIDVAIRVG-PLVDSELSVRPLGEIRYGLYASPAYAHTRGEPKSLKA 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+LI F    P+    +  +   +R        C+ +N+ L+  +    G GIALLP
Sbjct: 181 LAQHSLIMFA---PRGKPVWPMVRGKEREDVTLEALCV-INNNLAARELAADGLGIALLP 236

Query: 246 DYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +          L R++ED      +V   +  +   T K++AF +
Sbjct: 237 HFHAAPQLAQKRLTRVLEDWERVPVSVSALFTSSRYMTPKVRAFVD 282


>gi|301382204|ref|ZP_07230622.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302134277|ref|ZP_07260267.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 299

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A  GSFT  AE + + +  ++R I  LE  + ++LF R  R + LT +G + +
Sbjct: 1   MQVFAKLAELGSFTRVAEAMQVGRPHLTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L  T      +     G+LRI   +   Q      L+ F   +PDI + L 
Sbjct: 61  ERVKSNLADLAETTSMFDRNGSTLRGRLRIDIPVAFSQRSFMETLRGFTRAFPDIDVVLG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DCA+R+ + +  SSL+ R +    M   AAP YL+    P ++++L 
Sbjct: 121 VTDRTVDLVAEGIDCALRIGE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTPETLEDLK 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  ++F  L  +      W  +++   +  P    + VN   + +Q  + G GI   P 
Sbjct: 180 RHCGVSF--LSGQNNRPLPWHFSLNGEDLPYPAQGAITVNESNAYVQCGLAGFGILQAPG 237

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             V+    +  LV ++E        V   YP       +++AF  ++  
Sbjct: 238 ITVESFLASGELVEVLEAYRPLPRPVSVLYPSRTHLAPQVQAFVEWLRA 286


>gi|224825200|ref|ZP_03698306.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602871|gb|EEG09048.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 303

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 10/296 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR    VA +G F+ AA +L ++ SS++R +  LE  +G  L  R  R + LT+ G+  
Sbjct: 6   ALRTLVEVAETGGFSKAARRLGVATSSVTRLMDALEQSLGTVLLTRTTRRVLLTDAGANY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               S +   LE     + +   +P G LR+A  +   +  L G L  F+  YP +++ L
Sbjct: 66  LEQVSRLLADLEEADSSIADGREEPMGSLRVAVPVTYSRLCLGGALSGFMTTYPRVKLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +   D++++  D A+R+  P +   LI +KL        A P YL+    P +  EL
Sbjct: 126 VVSDAYQDLAVERLDLAVRIGLPNRDEHLIVKKLAENRRFLVAGPDYLERHGTPRAPIEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + F     +    F    +  R            NS   + +  + G GIALLP+
Sbjct: 186 ASHACLRFAYRPGRQRWTFR---SDARSEEVEVDGPFITNSLDMLHEAVLGGHGIALLPE 242

Query: 247 YIVKDNPNLVRIM---EDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++V+ +    R++   +            VY  Y    +++ K+ AF  ++    R
Sbjct: 243 WVVQQDIRAGRVLRLCDAWSVTPQQGDAYVYAAYLPNRRHSRKVHAFIQYLEEWLR 298


>gi|254460904|ref|ZP_05074320.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           HTCC2083]
 gi|206677493|gb|EDZ41980.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 301

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 138/298 (46%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+ +D LR F  +   GS + AA    +S +  S +IS LE+ +G++LF R  R LT T
Sbjct: 1   MSY-FDNLRTFVRIYELGSMSAAARDQRISPAVTSARISQLESHLGVRLFQRTTRSLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   +E  +  + +++  P G L IA  + +G+ L+  ++ EF   +P
Sbjct: 60  EQGRIFYDGACAVLEAVEAAEAGVGDATENPRGTLHIAAPLGVGRRLIAPHVPEFTREFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L + ++ ID++ +  D A  L +P + S+L  RK+        AAP Y+     P
Sbjct: 120 LVDVRLRMTDRKIDLTAEGLDIAFFLGRP-EDSNLRIRKIADCDRVLCAAPSYIAKHGHP 178

Query: 181 LSIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +  E+D+  HN +      P   E    L+T D P         + +    +  + + G
Sbjct: 179 KTGAEIDRGKHNCLNL--RFPGAREFQWELSTPDGPRKFDVQGRFECDDSDVLTDWALQG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GIAL P + + D   +  LV + ED       +   Y        K + F  F+  +
Sbjct: 237 AGIALRPVFEIADYLTSGALVTVSEDTPPLPVQMACLYTHRRHQDPKARLFMEFMIER 294


>gi|74311889|ref|YP_310308.1| putative LysR type transcriptional regulator [Shigella sonnei
           Ss046]
 gi|73855366|gb|AAZ88073.1| putative transcriptional regulator LYSR-type [Shigella sonnei
           Ss046]
          Length = 314

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 14  LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 74  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 134 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 193 DLSALPCLVIKERDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 250

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 251 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITIEFL 298


>gi|317053436|ref|YP_004119203.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953175|gb|ADU72647.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 305

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 147/301 (48%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  VA  GSF  AA  + +S  ++SR ++ LE  +G +LF R +R L LTE G
Sbjct: 6   DFEGLAMFAKVAEEGSFAAAARVMGVSVPTVSRAVARLEERLGGRLFNRTSRQLALTEFG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    SE+Y + E  + E  + +V+P G++R+A  +  G   +   + E +  +P++ 
Sbjct: 66  QSMVTKASEMYRQAEEMESEAHDLAVQPRGQVRLAVPMSFGLRWVAPLMPELIRQFPELS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+  +  D A+R+   +  SSL+ R+L  +  +  A+P YL     P   
Sbjct: 126 VDLHLSDASVDLIAEGFDAALRIAS-LPDSSLVARRLCAVTQYLVASPAYLAQHGMPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL      ++       +  F+  + +   I       L+V +  +++   + G GIA 
Sbjct: 185 RELSARQCFSYAYRARSQVWRFSHSSGLQEDI--VPNGPLRVTNSDALLPPLLAGLGIAE 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA--RDWK 298
           LP++I  +   +  LV ++++       +YF  P +     K+KA  +F        +W+
Sbjct: 243 LPEFIAAEYLKDGRLVHLLDEWSMTQGGLYFVTPTSRSRPLKVKALSDFFAKHLSQPEWR 302

Query: 299 F 299
           +
Sbjct: 303 W 303


>gi|289624296|ref|ZP_06457250.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646577|ref|ZP_06477920.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330870144|gb|EGH04853.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 299

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A  GSFT  AE   + +  ++R I  LE  + ++LF R  R + LT +G + +
Sbjct: 1   MQVFAKLAELGSFTKVAEATQIGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L  T      +     G+LRI       Q     +LK F   +PDI++ L 
Sbjct: 61  ERVKNNLADLAETTSMFDRNGSTLRGRLRIDIPAAFSQRSFMESLKGFTQAFPDIELALG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DCA+R+ + +  SSL+ R++    M   AAP YL+    P ++ EL 
Sbjct: 121 VTDRTVDLVAEGIDCALRIGE-LPDSSLVVREIGRATMVTCAAPSYLQAFGTPETLDELA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  ++F  L  +      W  +++      P    + VN   + +Q  + G GI   P 
Sbjct: 180 GHCGVSF--LSGQSNRPLPWHFSLNGDDFPVPPRGGITVNESNAYVQCGLAGFGILQAPG 237

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             V+    +  LV ++E        V   YP       +++AF  ++  
Sbjct: 238 ITVESFLASGELVEVLEAFRPLPRPVSVLYPSRTHLAPQVQAFVAWLKE 286


>gi|115353065|ref|YP_774904.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283053|gb|ABI88570.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 320

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 137/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + + 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVIVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +L
Sbjct: 127 LSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +                A   R   +     L VN    +    + G+GIALL  
Sbjct: 187 AHHNYLRRDSNSTMLDSLVIDAAAASRVNLK---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|170733060|ref|YP_001765007.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169816302|gb|ACA90885.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 297

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VA   SFT AA +L  SQS++S  +  LET +G++L  R  R + LT  G
Sbjct: 5   DLIDLNAFVAVAEERSFTRAAARLLTSQSALSHTLRRLETRLGVRLLTRTTRSVALTPAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +     +  ++ T   +      P G LRI T      ++L   L+EF+  YPDI 
Sbjct: 65  ETFLQGLKPAFEAIDLTLGTVGSLRESPRGTLRITTPRHAAVSVLWPVLQEFVRDYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLS 182
           +++ +D    D++ D  D  IRL + + + +++  K+   + +   A P Y+     P  
Sbjct: 125 VEVNIDAAFRDLADDRFDAGIRLGE-LVAPNMVAVKIGPALRLAIVATPGYVARRGIPTH 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L +H  I F   +P     + W     R   + R+   L  +    I+   V G G+
Sbjct: 184 PHQLAQHACINF--RLPGSGALYAWQFKKGRQEMKVRVEGPLTFDDPDMILAAAVDGQGV 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A L +        +  LVR +ED  +P    +  YP    N+   +   + + ++
Sbjct: 242 ACLVEDHAAPMIRDGRLVRFLEDWCSPFSGYHLYYPTRKNNSAAFRLLVDRLRIQ 296


>gi|119946957|ref|YP_944637.1| transcriptional regulator, substrate-binding, LysR family protein
           [Psychromonas ingrahamii 37]
 gi|119865561|gb|ABM05038.1| transcriptional regulator, substrate-binding, LysR family protein
           [Psychromonas ingrahamii 37]
          Length = 306

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 130/296 (43%), Gaps = 12/296 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  V   GS + AA+ + LS++ +S  I  LET + IKL  R  R +
Sbjct: 1   MDISFEQLKSMIVFARVVEQGSLSAAAKHIGLSRAVVSYHIKKLETHLAIKLLNRSTRSI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLTE GS+ ++    +  +      +++    +P G L+I   ++LG  ++   L  F  
Sbjct: 61  TLTEAGSQYYQRCRVIAEQASAAHQQIENLKNEPEGLLKITCPVNLGLQIIVPALNAFRK 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYP I + L L ++ +++  +  D A+R   P+  S L   KL ++      AP Y K  
Sbjct: 121 LYPKIDLDLKLTDEVVNVIKEGIDLAVR-GAPLPDSGLQASKLFSLSTCLCGAPAYFKKH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P S  +L  H  + +  L    +E    L+  +R         +  N+  +   +   
Sbjct: 180 GYPTSPAQLTAHEWVIY-KLTSSTIE----LSKGNRSFSIKVKGGISTNNAAARTAFVEG 234

Query: 238 GSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+  +P Y          L  I+ +       +Y  +P     + KL+   +++
Sbjct: 235 GHGLGRIPTYDAWPKIQAGTLESILGEYQLNDIDLYGVFPSGGAESKKLRLLIDYL 290


>gi|91782875|ref|YP_558081.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686829|gb|ABE30029.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 298

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 144/300 (48%), Gaps = 8/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALARLEKKLDTALVRRTTRRLQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    + H +E  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGETFLQHARAILHAMEEAEESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  + + +D+     D AIR+ + +Q S+L  R L T  +   A+P YL    EP
Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRIGE-LQDSTLHARALGTSKLRVLASPAYLAEYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            S++ L +H LI F    P+ +  +             +I   +  +S  ++ Q  + G 
Sbjct: 180 RSVEALREHRLIGF--TAPEHLNRWPLREGRKGGAEALKIEPAITASSGETLRQLALSGW 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA L D++   +     LV I+ +V+      V   Y ++    G+++ F +FI  + +
Sbjct: 238 GIACLADFMSAADVREKRLVPILGNVLVDERQRVSAVYYQSASLAGRVQCFLDFIAARVK 297


>gi|114046121|ref|YP_736671.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113887563|gb|ABI41614.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 300

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 134/295 (45%), Gaps = 13/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG + 
Sbjct: 6   AMRSFIEVANCGSFTKAAEHLDLSRLQVSRHIQEIEQWLSLRLLHRTTRCVSLTLQGEEA 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    V  ++   +      + +  G +RIAT + LGQ+ L   +  F+ L+P + IQL
Sbjct: 66  LQYCQRVLSEVAAMESRAHSHNTELVGSIRIATPVGLGQHSLFDVVDRFIKLHPKVNIQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +    +  +  D A+R  +     +LI RKL++I     AAP YL          +L
Sbjct: 126 LMSDSFAQLVDERVDVALRYTEQ-PDENLIARKLMSIDAVLCAAPSYLAQAEPLTVPNDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +          + +  L      + +P +  L  N    ++   + G GIA LP 
Sbjct: 185 LRHNCLIHSS-----QQHWQLLKEQQSELIKP-MGNLMANEMGVLVSAALRGHGIAYLPC 238

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +      +  L  ++ +   P  T++  Y         ++AF +F    A+ W+
Sbjct: 239 DLANQYLASGQLQEVLPEYTAPGQTLWAVYLSRSYQQALVRAFIDF---TAQQWQ 290


>gi|193077534|gb|ABO12366.2| putative transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 300

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 139/297 (46%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QNLL   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNLLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
             S  EL  H +++  +   + ++    L   D  + + ++S  +   +   + Q     
Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYMLAQLASQN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIALLPD   +D   +  LV+I+ D        +  YP        ++ F +++  
Sbjct: 238 CGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYPSRRGLLPAVRVFIDYLVE 294


>gi|15601393|ref|NP_233024.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121585575|ref|ZP_01675371.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121725808|ref|ZP_01679108.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147672145|ref|YP_001215418.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153819775|ref|ZP_01972442.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|227812202|ref|YP_002812212.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229506200|ref|ZP_04395709.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229509942|ref|ZP_04399422.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229513175|ref|ZP_04402640.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229516497|ref|ZP_04405944.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229525993|ref|ZP_04415397.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229605739|ref|YP_002876443.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254285660|ref|ZP_04960623.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|254849795|ref|ZP_05239145.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746591|ref|ZP_05420538.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|261212406|ref|ZP_05926691.1| transcriptional regulator [Vibrio sp. RC341]
 gi|262158817|ref|ZP_06029930.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262168486|ref|ZP_06036182.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|262190215|ref|ZP_06048491.1| transcriptional regulator [Vibrio cholerae CT 5369-93]
 gi|298499440|ref|ZP_07009246.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9658049|gb|AAF96536.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121550192|gb|EAX60206.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121631573|gb|EAX63941.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|126509674|gb|EAZ72268.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|146314528|gb|ABQ19068.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|150424157|gb|EDN16095.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|227011344|gb|ACP07555.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227015302|gb|ACP11511.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|229336151|gb|EEO01169.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229346378|gb|EEO11349.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229349585|gb|EEO14540.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229352387|gb|EEO17327.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229356551|gb|EEO21469.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229372225|gb|ACQ62647.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254845500|gb|EET23914.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736345|gb|EET91743.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|260838337|gb|EEX64993.1| transcriptional regulator [Vibrio sp. RC341]
 gi|262023015|gb|EEY41720.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|262029390|gb|EEY48041.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262033912|gb|EEY52376.1| transcriptional regulator [Vibrio cholerae CT 5369-93]
 gi|297541421|gb|EFH77472.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|327485652|gb|AEA80058.1| Transcriptional regulator, LysR family [Vibrio cholerae LMA3894-4]
          Length = 313

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G 
Sbjct: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ +
Sbjct: 64  IFLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L ++  D+  +  D AIR  +P   S+L+   L         A+P YL      L  
Sbjct: 124 KLDLSDRLTDMYANPVDIAIRYGQP-ADSNLVAMLLCDSNERVLCASPEYLAAHPPILHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + F  ++   + +   L+                N    + +  V G GIA 
Sbjct: 183 DDLQHHNCLCF--MLADTLHNKWILSRNGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +     +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K
Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREK 293


>gi|330829873|ref|YP_004392825.1| LysR-like transcriptional regulator [Aeromonas veronii B565]
 gi|328805009|gb|AEB50208.1| LysR-like transcriptional regulator [Aeromonas veronii B565]
          Length = 297

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 126/290 (43%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L VF +VAR GSFT AA +L L+QS +SR I  LE  +G++L  R  R L+LT+ G
Sbjct: 9   NYNDLHVFMLVAREGSFTKAAARLELAQSGVSRTIRDLEARLGVQLLMRTTRSLSLTQAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+R     +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 69  EQLYRTAQGCFQSLDAGLATLAHYRDTPSGTVRINASQHAIDKVLLPKLTIFRQRYPDIR 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ ++I  +  D  +RL   +    +  R    + M   A P +      P + 
Sbjct: 129 LELISESRFVNIIDERFDAGVRLGDEVDEGMVAVRITPDLEMVMVATPDHFLQYGFPQAP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +        +   W     + I          +          +G G+A 
Sbjct: 189 ADLAGHPCIAYQFADGSLYQWELWQE--GKAIKHRPQGQWVFSDSYMEAAAAKMGLGLAY 246

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P+ +V D      L+++++        +Y  YP     +  L+   + +
Sbjct: 247 VPEELVSDELERGILIQVLKPYSHRLAGLYLYYPH-RNVSPALRVVIDAL 295


>gi|323491937|ref|ZP_08097106.1| Transcriptional regulator, LysR family protein [Vibrio brasiliensis
           LMG 20546]
 gi|323313795|gb|EGA66890.1| Transcriptional regulator, LysR family protein [Vibrio brasiliensis
           LMG 20546]
          Length = 298

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 146/293 (49%), Gaps = 6/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF  V   GSFTHAAE L++++S++SR++  LE  +G++L  R  R L LT +
Sbjct: 1   MDLNAVTVFAQVVDCGSFTHAAETLNMTKSTVSRKLVELEQHLGVRLITRSTRSLVLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K ++ + ++   +   ++E+  +     G L +   ++LG  +L   + +FLL YP +
Sbjct: 61  GEKFYQSSLQMLEIINQAELEVSANQDLVRGPLNVVLPVELGHQVLGSYIHQFLLDYPHV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L N+++DI  +  D   ++   ++ S+L+ R L +      A+P YL    +  S
Sbjct: 121 TMNLELSNREVDIIGEGIDLYAQIGD-LEDSNLVSRYLTSSKRALVASPKYLAQYGDITS 179

Query: 183 IQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            Q+L   H+++   +   + +  ++                L+VN+  + ++ C+ G GI
Sbjct: 180 HQDLVSPHHMVEVFNKAAR-LPKWHLQPDTGESYHIDLPHRLRVNTITACLKACIDGLGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A+LP++I +++     LVR++     P   V   Y +      + K    ++ 
Sbjct: 239 AVLPEFICREHFASGALVRLLPQYKMPEVQVSLVYADRQLMPKRKKVMIEYLL 291


>gi|302878705|ref|YP_003847269.1| transcriptional regulator, LysR family [Gallionella
           capsiferriformans ES-2]
 gi|302581494|gb|ADL55505.1| transcriptional regulator, LysR family [Gallionella
           capsiferriformans ES-2]
          Length = 300

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA+ GSFT AA+ L +S++  +R +S LE  +  +L  R  R L+LTE
Sbjct: 1   MDRLTAMRVFVEVAQRGSFTAAADSLDISRAMATRYVSELEQWLNARLLQRSTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++              +  P G LRI T++  G   L   + ++L LYP 
Sbjct: 61  AGERCLLQCRQILELSGEMTDVSGRDNSAPKGPLRITTSMSFGMAHLAAAVTDYLKLYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + +++ ++ +++  +  D AIR+   +   +L+ R+L        A+P YL+    P 
Sbjct: 121 VSVDMLMVDRSVNLIEERIDLAIRISGEL-DPNLVTRRLAPCRSVVCASPDYLRRYGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L +HN +T+ +            A   + I  P    L  N    + Q  + G+G+
Sbjct: 180 SPADLTRHNCLTYSNFGKGQWR----FARAGQEIEVPVSGNLSANEATVLTQAALAGAGL 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK---AR 295
           AL P Y+      +  L  ++ +   P   +   Y         L+   +F+  +     
Sbjct: 236 ALQPTYLAGPLIRSGQLSAVLPEWEPPELGICGVYVSRRHMPATLRTLIDFLVQRYAGVP 295

Query: 296 DW 297
           DW
Sbjct: 296 DW 297


>gi|254251241|ref|ZP_04944559.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124893850|gb|EAY67730.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 320

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + + 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAARFPDVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +L
Sbjct: 127 LSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPDYLAKHGTPQTIGDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +                A   R         L VN    +    + G+GIALL  
Sbjct: 187 ATHNYLRRDSNSTMLDSLVIDAAAASRVTLN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIESGRLVPLLLDAVPPHEAPIYAVYASRRHVSAKVRSFVDFLATR 294


>gi|330831220|ref|YP_004394172.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328806356|gb|AEB51555.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 311

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 131/290 (45%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  + R    + AA +L +S+S IS+Q++ LET +G +L  R  R   LTE G +  
Sbjct: 1   MVIFDALVREQGISAAARRLGVSKSHISKQLALLETTLGAQLVQRTTRRFVLTELGQEYA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +    +     + E   K SG L +      G+  +  +LK F   YP++++++ 
Sbjct: 61  RHCHALVAVAQEADSMIAERRGKVSGVLHLGVGQSFGRLHVIPHLKAFQDRYPELELEVS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   ++  +  D  +   +  +   L+ ++L  I     A+P YL +   PL  ++L 
Sbjct: 121 LFDHRTNLVDEGLDLWLTTYED-KPEGLVGQRLADIGFVVAASPDYLLSHGTPLHPKDLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN IT+     +  + +++    +R   +      +V+   ++    + G GIA + +Y
Sbjct: 180 QHNCITYQSRERRYHQ-WSFRQGKERQTVQV-AGNYRVDMAEAVRDAALAGLGIAYIANY 237

Query: 248 IVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++     +  L+ ++ +        V+  Y        K++ F +F+  +
Sbjct: 238 LLDKELQSGKLIPVLPEWRPNQQMAVHAVYARREHLDPKIRLFIDFLKAR 287


>gi|319787311|ref|YP_004146786.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465823|gb|ADV27555.1| transcriptional regulator, LysR family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 329

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 132/295 (44%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYFAMVVEHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             ++R    +  + +  +  +   S +P G +R++  + + Q  L   L +FL  YP ++
Sbjct: 63  MSVYRHAQTMLTEAQAAREVVDRLSAEPRGLVRVSVPVAIAQQQLPKLLPKFLEQYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL ++N+ +D+  +  D AIR+R  +    SL+ R    I     A+P YL     P  
Sbjct: 123 LQLHVNNRRVDLINEGFDVAIRVRTRLDDDGSLVMRSFGQIQELMVASPKYLDRAGRPQD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSG 240
             +L  H  ++  +       + +      R +   +PR++      +  ++     G G
Sbjct: 183 PSDLASHLTLSMHEDEAHQRWELHGPNGEVRRVDNLQPRVAGF---DFPLLLSMVKDGFG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I +LP+ +  +   N  L  ++ +   P    +  +         ++ F +F+  
Sbjct: 240 ITMLPETVCAEAVRNGELEVVLPEWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 294


>gi|254248275|ref|ZP_04941595.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124874776|gb|EAY64766.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 322

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 128/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +L+    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAELDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H  +          E     +  +  + E + +  QVN   ++      G G
Sbjct: 180 QTPDELPNHVCLRLDTPASPAGEWRLERSDGEEAVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|325913880|ref|ZP_08176239.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325539955|gb|EGD11592.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 308

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 128/296 (43%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  +GSFT AAE L +S++S+++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETGSFTKAAETLEMSRASVTQLVQQLEARLRVRLLNRTTRRVHVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  +  L  ++  P G+LR+       + +L   +  F   YPD
Sbjct: 61  DGAAYYERVVRLLADMDDAETSLSAAATLPRGRLRVDVPSPFARLILMPAVPAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +D+  +  DC +R    I   SLI R +  +    YAAP YL     P 
Sbjct: 121 IQLDMGVSDRRVDLIGENVDCVVR-GGTIADQSLIARHVGDLTAGVYAAPSYLHRLGTPS 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              EL+  +H  + F          +  +   D  +       +  +   + +   + G 
Sbjct: 180 HPSELENTRHRCVGFMRWGATTTVPYA-MRRGDEAVTVHGRHVVAADDGNAYLAAGLAGM 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+   +     LV + ED       +   +      + KL+ F +++  
Sbjct: 239 GVLWLPVYMAAAHVASGELVSVFEDWQLEPMPLSIAFAPNRHVSAKLRVFIDWVIE 294


>gi|260460642|ref|ZP_05808893.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259033747|gb|EEW35007.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 292

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 133/286 (46%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSF+ AA  L + Q ++S+ I+ LE  +G++L  R  RGL+ T+ G   +
Sbjct: 7   MNTFIRVIETGSFSAAARHLRVGQPAVSKAIAQLEERLGVRLLSRTTRGLSPTDAGLSFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   + +  +   + ++   +G LRI T++  G+  +   LK FL  +P + +++ 
Sbjct: 67  EGAKRAVDEADEAENAARGTAAALTGLLRIGTSVTFGRLHVVPRLKAFLDAHPRLDVEVA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D++++D+  +  D  +RL +    +  I RK+ T      AAP YL    EP++  EL 
Sbjct: 127 MDDRNVDLVEEGVDVMLRLGESFAPAH-IGRKIATCRRLVVAAPSYLAREGEPIAPDELS 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I F          F   A      G+ R   L+V S   I +  + G G  +  ++
Sbjct: 186 RHEAILFVRAGTSNRWTFRRGAEEISLAGQGR---LRVTSAEGIREAVLAGIGFTVGSEW 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +      +  +  I+ D   P   ++  +P   K + + + F +F+
Sbjct: 243 MFDAELRSGAVRPILVDWALPPVELWALFPAGRKASVRARTFVDFL 288


>gi|238782977|ref|ZP_04627005.1| HTH-type transcriptional activator aaeR [Yersinia bercovieri ATCC
           43970]
 gi|238716180|gb|EEQ08164.1| HTH-type transcriptional activator aaeR [Yersinia bercovieri ATCC
           43970]
          Length = 303

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LETE+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFARVVECGSFTAAARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     + L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIGDGLDVVIRVGA-LQDSGLFSRRLGSMPMVVCAAKSYLLQHGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMINFSWLEYSVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLKAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGEVEVLFKKYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|117618303|ref|YP_858045.1| transcriptional regulator [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559710|gb|ABK36658.1| transcriptional regulator [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 309

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 137/298 (45%), Gaps = 8/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + L +F  V  +GSF  AAE+LHL++S++ + I+ LE  +G++LF+R  R  +LT
Sbjct: 1   MANSLNGLDLFASVVEAGSFAQAAERLHLTRSAVGKGIARLEQRLGVQLFHRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+  HR       ++   +  L  + +  +G L+++  +  GQ  +   L E    +P
Sbjct: 61  EEGALFHRHCLRALEEVRLGEAALASNKLTLNGSLKVSMPVLFGQLCVAPLLLELAQAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L   ++ +D+  +  D  IR  +P  S  L   +L    M   AAP YL    EP
Sbjct: 121 GLALSLSFSDRKVDLVEEGLDLVIRNGEPPDSLDLAAHRLGEHGMTLCAAPSYLAERGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
           + + +L +H  I +     +      W   +D      R    LQ +   +I Q  + G 
Sbjct: 181 MMLADLAEHEGIAY----LRQGRVLAWQWQLDGQWQSVRPTGRLQFDDLHAITQAAIAGF 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+A LP ++ +   +   L  ++  +    + +   +P +     K +   +++  + 
Sbjct: 237 GLAWLPSWLARPHLERGELCEVLGSLKGRRYPINALWPHSPHLPLKTRMAIDWLASRL 294


>gi|83717101|ref|YP_439840.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650926|gb|ABC34990.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 354

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 125/292 (42%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 19  MDTLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTP 78

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD
Sbjct: 79  AGERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPD 138

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P 
Sbjct: 139 VSIELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPR 198

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L +H  +T         E    L   +          +Q N+  S+      G GI
Sbjct: 199 TPRDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGI 256

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP Y   ++    NLVR++         VY  YP       K++ +   +
Sbjct: 257 GMLPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEAL 308


>gi|317402965|gb|EFV83505.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 299

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 130/296 (43%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  GS + AA  L +S++ +SR ++ +E  VG++L +R  R L+LT 
Sbjct: 1   MDRLKAMQVFVEVADRGSLSAAAVHLDMSRAMVSRYLAEMEQWVGVRLLHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++      ++   +   +  +      P G LR+ T++  G   L   + +++ L+P 
Sbjct: 61  AGAETLPRCRQMLDMVGDLRSAVSTPEDTPRGLLRMTTSMSFGSRHLARVVTDYVKLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             + L+L  + +++  +  D A+R+   +   +LI RKL        A+P YL+   EP 
Sbjct: 121 TSVDLMLVERAVNLVEERVDLAVRITNDL-DPNLIARKLAVCRSVVCASPEYLQREGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L   N +T                    P+  P    +  N    ++Q  + G+GI
Sbjct: 180 RVEDLSLRNCLTHSYFGKSLWR----FERDGVPVDVPVSGNISANEVSVLLQAALEGAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+LP Y   +      L  I+         +Y  Y    +    L++  +F+  + 
Sbjct: 236 AMLPTYYAAEYVAQGRLKAILPQARPQELGIYGVYASRRQMPLILRSMLDFLVERL 291


>gi|121592772|ref|YP_984668.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120604852|gb|ABM40592.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 312

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 124/297 (41%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D       F  VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R ++LT 
Sbjct: 1   MDKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLLVRTTRRISLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +   +   +  +    VK +G LR+      G+  +   +  F  L+P+
Sbjct: 61  EGSAFLEDCQRLLSDVANAEASVSAGGVKATGHLRVTAPAGFGRRHVAPLVPRFHDLHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P 
Sbjct: 121 VTLSLNLSDRVVDLAGEGYDCAVRVGD-LPDSSLVSVRMADNRRLCVATPQYLQRRGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYCV 236
              EL +H+ +T      +       +           +       L  +    +  +C+
Sbjct: 180 HPGELAQHDCLTLSSDASQTRGWAFRVPVAGGGGATEVVHFKPGGPLDCSDGQVLHDWCL 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GIA    + V+       LV ++E+   P   +Y  +P+      +++ +  ++
Sbjct: 240 GGWGIAWRSTWEVESEIAAGRLVAVLEEFAAPPNGIYVVFPQRKHLPLRVRLWIEYL 296


>gi|300717426|ref|YP_003742229.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299063262|emb|CAX60382.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 325

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 127/292 (43%), Gaps = 13/292 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +   + +F V+  + S T AA++  ++  ++SR+++ LE E+G +L  R  R ++LT+
Sbjct: 30  NMNLHDVSLFLVITETRSLTQAAKRQGITAMAVSRRLASLERELGTRLLQRTTRSVSLTQ 89

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +       +    +  +     S+   +G LRI      G+  +   + E L   P+
Sbjct: 90  EGMEFLPYAQALIEAEKGARALFSPSTQGAAGLLRITAPSGFGRRNILPLISELLADNPE 149

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L    IDI     D AIR+  P++ S+LI RK+        A+P YLK    P 
Sbjct: 150 LSIDLQLSEDVIDIVGRGIDVAIRIA-PLKDSTLIARKIADSPRVICASPDYLKVNGMPK 208

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S+++L KH+ +    +         W+      +   R+      ++   + + C  G G
Sbjct: 209 SVEDLMKHHCLRLSSVS-------QWIFERGGEVFRIRVGGRFISDNVEGVRELCAQGMG 261

Query: 241 IALLPDYIVKDN---PNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +A L  + V        LV I + D      +V+   P       ++  F +
Sbjct: 262 LAQLTRWDVMKEIRQGTLVEIELSDARPQDLSVWAVLPTTRYLPLRVSTFID 313


>gi|120609112|ref|YP_968790.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120587576|gb|ABM31016.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 325

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 125/299 (41%), Gaps = 13/299 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D       F  VA  GS T AA    ++ + + R++  LE  +G+KL  R  R ++LT 
Sbjct: 1   MDKLKAFESFVSVATRGSLTAAARAEGVAPAIMGRRLDALEEHLGVKLMVRTTRRISLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +   +   +  +     + +G LRI      G+  +   +  F  L+PD
Sbjct: 61  EGSAFLEDCQRLLADVAEAEASVSVGGARATGHLRITAPAGFGRRHVAPLVPLFRDLHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L L ++ +D++ +  DCA+R+   +  SSL+  ++        A P YL+    P 
Sbjct: 121 VRISLNLSDRVVDLAGEGFDCAVRVGD-LPDSSLVSVRIADNRRLCVATPAYLERHGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-------RISCLQVNSYLSIMQY 234
              EL +H  +       +    + +      P G P           L  +    +  +
Sbjct: 180 HPSELARHACLMLSSDASQT-RGWAFRMPAADPGGAPGDVVHVKPTGPLDCSDGQVLHDW 238

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           C+ G GIA    + V+       LV ++ED   P   +Y  +P A     +++ + +++
Sbjct: 239 CLGGWGIAWRSTWEVEAEIAAGRLVAVLEDFAAPPNGIYVVFPHARHLPLRVRLWIDYL 297


>gi|146343447|ref|YP_001208495.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146196253|emb|CAL80280.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 303

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 134/292 (45%), Gaps = 9/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L VF  VA SGSF+ A   L L+ S++SR +  +E  +G +L  R  R LTLT +G  
Sbjct: 10  RDLEVFCAVADSGSFSAAGRGLGLTPSAVSRTLDRIEIRLGARLLLRSTRALTLTAEGQA 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   L   +  + + S  P G++R++  +  G+  +   L EF+  YP+I + 
Sbjct: 70  YLAAARRILADLNEAEQAIADQSA-PRGRIRVSAALSHGRICIVPLLGEFVRRYPNILVD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +DI+   AD AIR   P+  S+L  R+L        A+P YL  C  PL+ ++
Sbjct: 129 INLSDGLVDIAAGQADVAIR-GGPLADSALTARRLSDNGRSIVASPDYLARCGVPLTPED 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + +G    + +  F                 ++ NS  ++ +  + G GI  + 
Sbjct: 188 LHHHNCLNYGFRRAEPVWPFR---RDGVDYALKLRGAIEANSGDTLTELALDGVGIVRVG 244

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRNFIFLK 293
           D+ +++      LVR++E        V +  +        +++ F +++  +
Sbjct: 245 DFSLRNAVAEGRLVRLLEAFNPGDREVFHAVFVGGANTPARVRVFVDYLVER 296


>gi|116250129|ref|YP_765967.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254777|emb|CAK05851.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 301

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 134/289 (46%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +  F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R LTLTE G+
Sbjct: 4   IEGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKSLGGMLLHRTTRKLTLTEDGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 + +  ++E    ++ E     SG +RIA  +  G+  L   L  FL  +P+I++
Sbjct: 64  VFLGRAARIVREIEEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLAEHPEIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +D++ +D + D  D  IR   PI  S L+  KL        A+P YL     P S+ 
Sbjct: 124 TLDIDDRRVDAASDGYDAIIRNG-PIADSRLVAWKLAHSRRLLCASPDYLARQGIPSSLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  I + +   + + D+    T D  I       L +N+   +    + G GIALL
Sbjct: 183 DLNSHRGIFYTN---RGVADWR-FQTFDGAIVVRAKLALGINNGDMLRDAAIAGLGIALL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I         L  I       +  +Y  +PE    + KL+A  + +
Sbjct: 239 PAFIAGPAIREGRLAEIDVGHKPEAEFIYMAHPEGRNPSAKLRAIADHL 287


>gi|90579704|ref|ZP_01235513.1| putative transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
 gi|90439278|gb|EAS64460.1| putative transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
          Length = 303

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 133/289 (46%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F V+   GS+T A+ +L ++ S++S+QI+ LE  + +KL  R  R L ++E G+++
Sbjct: 12  DLATFIVIVDEGSYTAASRKLGVTPSALSKQIARLEKALSVKLLERTTRKLMISESGNRI 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++  +++    +            PSG + IA        LLQ  +K FL  YP++ ++L
Sbjct: 72  YKQCTQMIDAAKQAIEISSSEHTVPSGTVTIAAPKAFMNILLQPLVKPFLTQYPEVNLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DIDI  +  D   RL +   S  L+ +K+  +++   A+P+Y+     P+  ++L
Sbjct: 132 KACDGDIDIIAEGIDVVFRLTER-PSEGLVLKKIGKVNLTLCASPNYIAQRGMPIHPRDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +   +     + DF+        I         VN     ++      GI + PD
Sbjct: 191 KHHDCLYLAETNIDHIWDFD---KNGEQITVAVSGRYAVNHSQMRLKGVKDDLGIGIFPD 247

Query: 247 YIVKDN---PNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNF 289
           +++K +     +++++ D          +   Y ++     +++A  ++
Sbjct: 248 FVIKHDLVAGKVIQVLPDWTIRGNYHGDIALQYAQSKFMPARIRAVIDY 296


>gi|49083524|gb|AAT51054.1| PA3135 [synthetic construct]
          Length = 307

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 85/295 (28%), Positives = 137/295 (46%), Gaps = 12/295 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D   +F  V    SFT AA+ L + +S++SR+I+ LE  +G++L  R  R L LTE 
Sbjct: 1   MGLDDALIFTRVVEYHSFTQAAQSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++ H     +  + +    PSG LRI + I+ GQ  L   L +F+  YP I
Sbjct: 61  GQAYYERCRQIMHDFAEAEQAVMQLQQAPSGLLRITSPIEFGQMFLASLLGDFMRQYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++ L ++ +D   +  D  I + +P + S+L+ R+L++      A+P YL     P S
Sbjct: 121 TAEVELASRSVDPLQEGVDIVIMVGQP-EDSTLVARRLLSTSRWLCASPDYLAAHGTPTS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL  H  +       +      W  + D     P    L  N+     +  V G+GIA
Sbjct: 180 VAELAGHRAVLLSTDSQRY-----WPLSGD---SLPCQRVLSCNNITFAREAVVAGAGIA 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LP  I  +   +  LVR++ DV  P   +Y  YP       K+KAF +F+  + 
Sbjct: 232 ALPALICAESVHSGRLVRLLADVPLPVGELYAVYPSRRFQAMKVKAFLDFLISRL 286


>gi|169633663|ref|YP_001707399.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169152455|emb|CAP01420.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii]
          Length = 300

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 139/297 (46%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G+++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGEVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
             S  EL  H +++  +   + ++    L   D  + + ++S  +   +   + Q     
Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYMLAQLASQN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIALLPD   +D   +  LV+I+ D        +  YP        ++ F +++  
Sbjct: 238 CGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYPSRRGLLPAVRVFIDYLVE 294


>gi|172061917|ref|YP_001809569.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994434|gb|ACB65353.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 320

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + + 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVVVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +L
Sbjct: 127 LSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +                A   R         L VN    +    + G+GIALL  
Sbjct: 187 AHHNYLRRDSNSTMLDSLVIDAAAASRVNLN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|254437384|ref|ZP_05050878.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198252830|gb|EDY77144.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 294

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 144/300 (48%), Gaps = 8/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DW  L+ F  V ++G+   A  QL  SQ ++SRQ+  LET+ G+ LF R    L LT
Sbjct: 1   MNIDWSLLKTFLTVVQAGTVAQAGAQLACSQPTVSRQLKELETQTGLTLFDRRGYRLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ +      +  + +   + +       +G +RI+T+  +  + L   L      YP
Sbjct: 61  DAGASILEFAQNMADQADHLALAIAGKETVVNGTIRISTSEVIAYHFLPPVLVTLQEQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I +++I++N   ++S   AD AIRL +P     L++ K+ T+ M  +A+  YL+    P
Sbjct: 121 EIDVEIIVENSVANLSAREADIAIRLFRP-DKLGLVRTKIGTLEMGVFASKSYLELYGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  HNL+ + D   + ++ F        P   P +  ++ +++L        G+G
Sbjct: 180 RTLDDLVYHNLLGY-DQSAEILDGFR----KHLPDANPSLFSVRCDNHLVYWNMIRAGNG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA--RDWK 298
           I      +   +  L R++ D+      V+    EAL+ T +++A    +  +   R W+
Sbjct: 235 IGFCSTLMASQDKMLTRVLPDLKPDGNDVWLATHEALQKTPRVRAVWELLSSQLTKRLWE 294


>gi|120608930|ref|YP_968608.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120587394|gb|ABM30834.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 318

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 130/297 (43%), Gaps = 11/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++  F  VA   SFT AAE L + ++S S  +  LET++G +L +R  R + LT+ G 
Sbjct: 4   FDRMHTFVRVAELASFTQAAEALGIPKASASTAVQQLETQLGTRLLHRTTRRVQLTQDGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESS------VKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
             +    ++   ++  Q   Q +           G++RI  +  + +N++   L E L  
Sbjct: 64  AYYERCKDLLADVDELQSMFQHADGEGAGGGGLRGRVRIDMSTGMARNVVVPRLPELLAR 123

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +  ++++L    + +D+  +  DC +R    +  +SL+ R L    +   A+P YL+   
Sbjct: 124 HSGLEVELSSTERRVDVVREGFDCVLRTGAVV-DASLVARPLGPARLVNCASPAYLRAHG 182

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++++L  H L+ F + +      F            P    L VN+  + +  C+ G
Sbjct: 183 TPQTLEDLGDHRLVHFVNTLGARSGGFE-AMVDGTLAAIPMQGALTVNNAEAYIAGCLAG 241

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  +P   V D      LV ++     P   +   Y        +++A  +++  
Sbjct: 242 LGIIQVPRLGVVDLLAQGALVEVLPQHAAPPMPLTLMYATRRNLPRRVRAVMDWLAE 298


>gi|153838439|ref|ZP_01991106.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149748159|gb|EDM59018.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 324

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R + LTE
Sbjct: 7   MDKIRSLRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V  +L   +  L+  +   SG L+I   +  G+  ++  LKEF   YP 
Sbjct: 67  AGRRYANTARFVLDELAACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPS 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I +  D+  +DI     D +IR    +Q S LI R+L  I      +  YL     P 
Sbjct: 127 ITIDIHYDDAYVDIIEQGIDVSIR-SGVVQDSQLIVRQLSPIDFIICGSQDYLTRHGVPS 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                + H+ + F       +               P  +   VN   S+ + C  G G+
Sbjct: 186 GPDAFNDHSWVRFRFKQTGKLLPIRMPEPDGTSEYNPERN-FIVNDGESMAELCAEGLGL 244

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +P +I +D      LV I   +      VY  Y        +++ F +FI    +D
Sbjct: 245 TQIPHFIARDWLKVGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFITQAIQD 302


>gi|170691236|ref|ZP_02882401.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143441|gb|EDT11604.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 300

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L +F +VAR  +   AA +L ++  ++S++++ LE  +G++L  R  R L+LT 
Sbjct: 1   MDSFSDLNLFALVARHRNLAAAARELGVTPPAVSKRLAQLERRLGVRLMNRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G       S +  +L   +  + +S  +P+G LR+  +   G+  +   + EF+  YP 
Sbjct: 61  EGELYLSNGSRILDELSELEHLVMQSRGEPTGLLRVNASFGFGRARIAPAVSEFVTRYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L L ++ + +  +  D  IR  + +  + +  R L+       A+P Y+     P 
Sbjct: 121 IKILLHLTDRPMSLQDEGFDLGIRFGE-VPDARINARLLLENRRMVCASPGYVARHGRPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I   +            +   R         L  N    ++ + + G GI
Sbjct: 180 VPHDLTRHACIVLRENESAYGTWH--FSRGKRSETVKVDGALSSNDGGVVLHWALEGRGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +   + V+ +     LV +++D   P   ++  Y E  + + +L+AF +F+
Sbjct: 238 VVRSQWEVERHLARGELVTLLDDWALPDANIHAIYLERNQLSVRLRAFVDFL 289


>gi|330820088|ref|YP_004348950.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327372083|gb|AEA63438.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 300

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 126/292 (43%), Gaps = 9/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +R+F  +   GSF+    +  + Q ++S+QI+ LE  +G +L  R +R + +T+ G 
Sbjct: 4   LDAIRLFVRLVERGSFSAVGREQGIGQPAVSKQIAALERHLGAQLLLRTSRRVAVTDAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++    +  +  + E    P G +R+ T    G+  +   L EF   +P++ +
Sbjct: 64  AFYESARQLVEDFDAVESSVGERQQSPRGLVRLNTAPGHGRLWITPRLPEFFARHPEVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L +  +++D+     D AIR  K +  SSLI R+L    +   A+  YL     P  + 
Sbjct: 124 ELSVSERNVDLVGQGIDLAIRHGK-LVDSSLIARRLGETALVLAASRDYLAAHGTPARLD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIAL 243
           +LD H  I F     +  E + W   V R     R    L       +    V G GI+ 
Sbjct: 183 DLDAHRCIVFS----RDREPYPWALRVGREALSYRPRGSLLTGDAEHVRAAVVNGLGISQ 238

Query: 244 LPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            P ++++D     R+   +  +      ++  +    +   +++   +F+  
Sbjct: 239 APLWLLEDEIRAGRVQVLLPRLQPEPLPIHLVHAAGRRVPMRVRVLIDFLVE 290


>gi|153211877|ref|ZP_01947724.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124116953|gb|EAY35773.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
          Length = 313

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G 
Sbjct: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ +
Sbjct: 64  IFLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L ++  D+  +  D AIR  +P   S+L+   L         A+P YL      L  
Sbjct: 124 KLDLSDRLTDMYANPVDIAIRYGQP-ADSNLVAMLLCDSNERVLCASPEYLATHPPILHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + F  ++   + +   L+                N    + +  V G GIA 
Sbjct: 183 DDLQHHNCLCF--MLADTLHNKWILSRNGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +     +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K
Sbjct: 241 KSLMDISQEIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREK 293


>gi|15595254|ref|NP_248746.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107099048|ref|ZP_01362966.1| hypothetical protein PaerPA_01000057 [Pseudomonas aeruginosa PACS2]
 gi|218888801|ref|YP_002437665.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254237699|ref|ZP_04931022.1| hypothetical protein PACG_03787 [Pseudomonas aeruginosa C3719]
 gi|254243166|ref|ZP_04936488.1| hypothetical protein PA2G_03968 [Pseudomonas aeruginosa 2192]
 gi|296386539|ref|ZP_06876038.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313112392|ref|ZP_07798147.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9945879|gb|AAG03446.1|AE004445_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126169630|gb|EAZ55141.1| hypothetical protein PACG_03787 [Pseudomonas aeruginosa C3719]
 gi|126196544|gb|EAZ60607.1| hypothetical protein PA2G_03968 [Pseudomonas aeruginosa 2192]
 gi|218769024|emb|CAW24784.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310884649|gb|EFQ43243.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 306

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 128/288 (44%), Gaps = 8/288 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  V  SGS T AAE+L +S++ +SR ++ LE  VG +L +R  R L+LT+ G++L  
Sbjct: 8   RVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWVGARLLHRSTRRLSLTDAGAELLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    +  Q   Q     P G LRI +++   Q  L      F+  YP   I L +
Sbjct: 68  QCREMLAVADAMQATGQTRRDSPRGTLRITSSLSFAQAWLTRAAAAFVERYPGTAIDLQV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +++  +  D A+R+   +   +LI R+L        AAP YL+    P   ++L  
Sbjct: 128 NSQVVNLVEERIDLALRIANQL-DPNLIARRLGECRSVICAAPDYLRRHGTPRRPEDLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        +          P   P    L  N    +++    G+GI+  P Y 
Sbjct: 187 HNCLTYSYFGRSLWQ----FERDGEPTSVPVGGSLSANESTVLLEAAAAGAGISQQPLYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 +  LV ++ +       ++  Y    +    L+A  +F+  +
Sbjct: 243 AAPLIRSGRLVALLPEWSPQVLGIHAVYASRRQMPPALRALLDFLVER 290


>gi|298489035|ref|ZP_07007058.1| Transcriptional regulatory protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156533|gb|EFH97630.1| Transcriptional regulatory protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 297

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L VF  VAR  SFT AA  L +SQS+IS  I  LE  +GI+L  R  RG + TE G
Sbjct: 5   DFNSLAVFITVARERSFTKAAAHLGVSQSAISHSIRSLEERLGIRLLARTTRGASPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       Y  +ET    L E   KP+G +RI +       +L   L   L  YPD+ 
Sbjct: 65  ERLLVSLVPYYEGIETEIAALGELRDKPAGTIRITSPDHAASTILWPKLSRLLPEYPDLT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +  + IDI  +  D  +R+   +    +  R      M    AP Y  +  +P   
Sbjct: 125 LEINIGYRLIDIVAERFDAGVRIGDQVAKDMIAVRISPDFRMAVVGAPSYFAHRAKPQIP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L  HN       +P     + W  +        ++S  +  ++   IM   + G G+A
Sbjct: 185 QDLTTHNCANL--RLPTHGGLYAWEFSKAGKALHVQVSGQMIFSNSPQIMAAALQGYGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             P+ +V+   ++  L+R++ED        +  YP   ++        N +
Sbjct: 243 YAPEDLVQAYVEDGQLIRVLEDWSPTFPGYHLYYPSRRQSLPAFALMVNAL 293


>gi|254473151|ref|ZP_05086549.1| transcriptional regulator [Pseudovibrio sp. JE062]
 gi|211957872|gb|EEA93074.1| transcriptional regulator [Pseudovibrio sp. JE062]
          Length = 313

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 142/293 (48%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  SG F+ AA  +  S++ IS+ +S LE E+G++L  R  R ++LT+
Sbjct: 1   MDSITRIRCFLQVVESGGFSAAARDMGRSKALISKYVSELEDELGVRLLNRTTRQISLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   E+  + +  +  +Q+   +  G+LR++      +  L   L  FL  +P 
Sbjct: 61  VGEAYFREAGELLQRFDDLKDAVQQDHREVRGRLRLSAPRSFSEATLGRVLASFLQEHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + ++++ +DI  +  D AIR+ + ++ SSLI RK+  + +   A+P Y +    P 
Sbjct: 121 VELDIEMEDRFVDIVEEGYDVAIRVAE-LEDSSLIARKIRDVRVVVCASPAYWEAHGMPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     I   D   K   ++ +L   +R    P    + VNS  + +   + G G+
Sbjct: 180 KPGDLANMPCII--DTNYKHKTNWMFLENGER-FSVPVKGPMHVNSAKTAVAAALAGLGV 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             LP + V +   +  L+  +ED   P   +Y  YP     + K++AF +++ 
Sbjct: 237 VRLPIFYVLEELMSGQLIPALEDCEVPGPAMYAVYPHRRHLSAKVRAFVDYMV 289


>gi|172064896|ref|YP_001815608.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997138|gb|ACB68055.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 301

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 130/301 (43%), Gaps = 11/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++
Sbjct: 1   MDKFSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    ++   L      + +   +PSG LR++  +  G + +   +  FL  YP 
Sbjct: 61  AGAVYYARAKQLLEALAEADALVADRGDEPSGPLRVSVPVAYGMHRIAPQVGAFLARYPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L +  +D+     D AIRL +   S+ ++ R+L T   +  A+P YL     P 
Sbjct: 121 LDLDLQLTDARVDLVTSRIDVAIRLGEAAPSAEVVARQLGTFRRYVVASPDYLDAHGTPS 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  H  + F     +    F                 L+ N    +    + G GI
Sbjct: 181 TPGELVDHGCLRFHFGGDQQAWSF---VDAHGATKVLVTGRLKSNHSEVLRAAALDGGGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD++V  +     L R+ E            V   Y    + + ++ AF +F+  +A
Sbjct: 238 ALLPDWLVDADVRAGRLRRLFEQYDVVPDAARSIVTALYLPNQRGSKRVTAFIDFVEAQA 297

Query: 295 R 295
           R
Sbjct: 298 R 298


>gi|229528534|ref|ZP_04417925.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229334896|gb|EEO00382.1| transcriptional regulator [Vibrio cholerae 12129(1)]
          Length = 313

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G 
Sbjct: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ +
Sbjct: 64  IFLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L ++  D+  +  D AIR  +P   S+L+   L         A+P YL      L  
Sbjct: 124 KLDLSDRLTDMYANPVDIAIRYGQP-ADSNLVAMLLCDSNERVLCASPEYLATHPPILHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + F  ++   + +   L+                N    + +  V G GIA 
Sbjct: 183 DDLQHHNCLCF--MLADTLHNKWILSRNGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +     +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K
Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREK 293


>gi|170695597|ref|ZP_02886741.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170139584|gb|EDT07768.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 320

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 134/293 (45%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
               F ++A+  S + AA  L LS  + ++++  +E  +G++L  R  R ++LT +G   
Sbjct: 10  DFEFFILLAKLRSLSGAARALDLSPPAATKRLGVIEQRLGVRLVNRTTRSVSLTPEGETY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  S++  ++   +  +  +   P G LRI  T+  G+  +   + EF   +P +++Q 
Sbjct: 70  LRYASQIVGQVREMEEAISGAKRDPQGLLRINATLGFGRTTIAPLVSEFAKRFPAVEVQF 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+     D AIR  + +  S L  R++++      A+P YL+    P  + +L
Sbjct: 130 EVTDRPVDLVEGAFDMAIRFGE-LPDSRLSARRIMSNRRFLCASPKYLEKYGTPERVDDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  I              W   V+  I   ++   L  N    ++++ + G GI +  
Sbjct: 189 AEHRCIIHRQNDDAYG---VWRYIVNDHIEAIKVKGALSSNDGDIVLRWALDGHGILIRS 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++ +     +  L  ++ + + PS  ++  YP     T + +AF +F+  + +
Sbjct: 246 EWDLAKYVQSGRLNLVLPNTVLPSADLFVYYPRQKNQTVRARAFIDFLVSRFQ 298


>gi|126730587|ref|ZP_01746397.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
 gi|126708753|gb|EBA07809.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
          Length = 298

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 8/297 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+L+ F   A++GSFT AA+QL +S    S+ ++ LE  +G++L  R  R + LT 
Sbjct: 1   MDIVDQLKTFVATAKTGSFTAAADQLGVSNRLTSKYVAELENRLGVRLLQRTTRKVGLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +   L+    E+ ++S   +G +RI+  +  G+  + G L  F    PD
Sbjct: 61  AGEDLLARAPALLDDLDALLAEVSDTSRGFTGVVRISAPVTFGEVYVAGMLARFAARNPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L +  +D++ D  D A R+ +     SL  RKL  +   A A P YL     P 
Sbjct: 121 LTFDLRLHDGFVDLASDGIDLAFRVGQS-DMRSLKSRKLGEMRSVAAAGPAYLDGHGAPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I   D   +    + +L        + +    QVNS  +  +    G GI
Sbjct: 180 TPDDLRHHACIL--DTNRRAPRRWVFLKNGTEQAVDVQ-GRFQVNSARAAAELAASGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              P + V D      LV +++D  + +  V   Y E      K++A  +F    +R
Sbjct: 237 CYTPRFAVTDALATGRLVPVLKDYESTTIPVSAVYLEGRSLPRKIRALIDFAVEDSR 293


>gi|317404865|gb|EFV85238.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 301

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 120/298 (40%), Gaps = 7/298 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+F   A  G F+ AA +L L+ +  S  +  LE  +  +LF R  R L LT  G 
Sbjct: 4   LEDLRIFVAAADHGGFSAAARELDLTPAVASAALKRLELSLDTRLFVRSTRSLRLTGDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L+  Q  L       SG L ++   DLG+++L   L EF   +P +  
Sbjct: 64  RYLEYARAALSSLQAGQSALARDKTAISGTLSVSIPSDLGRHVLLPWLDEFQQRHPRVNF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           Q+ + ++  D+     D A+R   P   S L+   L         AAP Y      P + 
Sbjct: 124 QVRISDRLADLYRQPVDIALRYGTPG-DSGLVALPLGEHNRRVVCAAPAYFARHGLPQTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN + F  ++ + + D          +  P       +    + ++ + G G+A 
Sbjct: 183 ADLRRHNCLCF--VLGESLHDRWAFEHEGGALTVPVKGDRVGDDGDLVRRWALAGYGVAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              Y V  +     LV+ + D       +Y      +  +  +K  R F+  + R+++
Sbjct: 241 KSRYDVLADLRAGRLVQALPDYTGEPSPLYLLCVHRMLLSPAVKRLREFLQARLREFE 298


>gi|226952138|ref|ZP_03822602.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|226837123|gb|EEH69506.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
          Length = 306

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA   SFT AA+   L+ +++SR I+ LE  +  +LF R  R + LT  G 
Sbjct: 10  LSSVELFCAVAEHKSFTQAAKIAGLTPAAVSRSIARLEQRLNTQLFVRSTRQVRLTHAGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   +   ++   +  L+  S + +G++RI+     G   +   +  F   YP+IQI
Sbjct: 70  IYFQQCQQGLTQIIEAEQLLRNQSQQLNGRIRISLPTPYGHYRVLPLIPIFKQTYPNIQI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L NK++D   +  D AIR  +  + S+LI R L    +   AA  YL +   P  I 
Sbjct: 130 DLQLTNKNVDFIAEGFDLAIR-GRYFKDSNLIVRTLEHAELVVVAAASYLHSHTIPTDIA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIA 242
            LD+H  + F  ++P   +   WL  V+  I E   + S   ++  L  +     G+G+ 
Sbjct: 189 ALDQHECLQF--ILPSTGKSVPWLFKVNNQIHEYTTKGSLHCLDDILGTVTLAKHGAGLL 246

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
               +IV  +      V ++      S      YP     +  ++ F +F+    +
Sbjct: 247 QTYRFIVAQDIQNGQFVELLHPFAGASRPFSLVYPSQKYASAHIRTFIDFLITHLK 302


>gi|115352763|ref|YP_774602.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282751|gb|ABI88268.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 295

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 132/288 (45%), Gaps = 6/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R I G+E  +G +L  R  R L+LT+ G    
Sbjct: 7   MRLFIKVAELHSFARAATELNISNSSATRLIMGIEDRLGARLLNRTTRSLSLTDAGHLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  +     +P G L+IA  +  G ++L   +  F   +P I  ++ 
Sbjct: 67  AQIRHVIEEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTQHPAIVPEVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D  + L + I +++L+ R L  +     AAP Y++    P+   +L 
Sbjct: 127 IVDRHVDLVSEGFDVGLLLSQRISTNTLVTRPLTRLKRIVCAAPRYVEAHGAPIHPHDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ +TF        E  ++     R    P  S    N+   I  + + G GIA+LPD+
Sbjct: 187 SHSCLTFHADF--AGEYLSFDHEPTRVAVRPNKSA-SSNNIGLIRNWALSGMGIAVLPDF 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +V+    +  L+ ++ D       +   YP       K + F + +  
Sbjct: 244 LVEADLADGRLLALLPDYRLEELEMNIAYPSRRHFPRKTRLFVDHLVE 291


>gi|315182143|gb|ADT89056.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 298

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 10/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V   G+F  AAE+L LS   +S+ ++ LE  + ++L  R  R + LTE
Sbjct: 1   MDKISAMRAFTTVVSEGNFVKAAERLDLSPQLVSKYVAQLEDALKVRLLNRTTRRVNLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        +V   ++  +  L     + SG LR++  +  G + L   +  F   YPD
Sbjct: 61  AGQAYFERCQQVLQDIDDMENALSNLQSQVSGTLRVSAPMSFGVHHLSKPVALFQDRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+L ++ +D+  +  D A+R+   ++ S+L+ +K+  IH+   AAPHY +    P 
Sbjct: 121 VKVELLLTDRKVDLLDEGVDIALRIGH-LKDSALVAKKITPIHLSICAAPHYWQQHGRPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L + N + F    P+     +W   V         S    N+   I+   +LG G 
Sbjct: 180 QFEALSQLNYLRFTYSDPRAWFR-DWPKHVSIHDFS---SDFSSNNGDVIVNAALLGRGY 235

Query: 242 ALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+ P ++        +L  ++         +Y  Y        K++ F +F+
Sbjct: 236 AIQPTFLTGAAIKRGDL-EVLSSFALDPLGLYALYSHREFLASKVRHFIDFL 286


>gi|299770703|ref|YP_003732729.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700791|gb|ADI91356.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 298

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++  F  V  SGSFT AAE L LS+S +S  I  LE ++   L  R+ R + LT
Sbjct: 1   MQKNLKQITSFLQVVDSGSFTKAAEILGLSRSMVSIDIKQLEKQLNTSLLIRNTRNIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++  +++      Q      +G LR ++T + GQ  +   L EF  LYP
Sbjct: 61  EIGQHFYEDFKQIQLQIDEAFERSQHLGTSITGTLRFSSTNEFGQRFILPLLPEFCRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q + ++   D+  +  D  IRL   +++SSL  RK+    ++  A P ++K+    
Sbjct: 121 HLRLQYLFNSSLDDLVTEKLDLVIRLGN-LKNSSLKTRKIGEYPIYLVATPQFIKDH-PI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            +I +L     I    L+      +     +      P I S  + NS  +I Q  +   
Sbjct: 179 ENISDLADVPWIGHT-LLNWQDSQYILQNNLGEQYSLPFIRSQYESNSVTAIHQMALSSL 237

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+A+ P ++V ++     L+R+  D   P  ++   YP       K +AF +++  
Sbjct: 238 GVAICPAWLVDEDIQQNRLIRLFPDFSLPLQSIQLLYPHTSNLPAKTRAFIDYLIA 293


>gi|167644542|ref|YP_001682205.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167346972|gb|ABZ69707.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 301

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 135/290 (46%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +LR F  VA+  SF  AA +L ++ S++S  I  LE  +G+KL +R  R +  TE G
Sbjct: 6   EFGELRAFAAVAQERSFRRAATRLGVTPSALSHVIRALEERLGVKLLHRTTRSVAPTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L         ++E    E+   S  P G+LR+       + ++   L +F+ LYPDI 
Sbjct: 66  AALLGRLVPAMTEIEHAVSEVGAFSDHPRGRLRLNLPRLAAEAVVLPKLGQFVQLYPDIV 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L++D+   DI  +  D  IR    + S     R    + +   A+P YL +   P + 
Sbjct: 126 LDLVIDDSMADIVAEGFDAGIRAGAHVHSDMTAVRLSPDLRVAVVASPTYLASRGAPSTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L +H  I +     +    + W       + E RI + + VN    I ++ + G G+A
Sbjct: 186 QDLREHRCINY--RWSQAGAVYRWGFARADEVLEVRIEAAITVNDTNLITRFALDGLGLA 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + + +V ++     LVR+++D   PS   +  Y      +  L+A   F
Sbjct: 244 YILEDVVAEHLAAGRLVRVLDDWCRPSSGFHLYYSGRRHMSAPLRAMIEF 293


>gi|322831540|ref|YP_004211567.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166741|gb|ADW72440.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 305

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 119/287 (41%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  +   GS   AAE L++S++ ++R +S +E   G +L +R  R L+LT+ G     
Sbjct: 8   QVFVAIVERGSMVSAAESLNMSRAMVTRYLSEMEKWSGARLLHRSTRKLSLTDAGENTLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++                   G LR++ +   GQ  +   + EFL  +P + I L L
Sbjct: 68  RCRKMLSVAAEMSSVADTGDEALRGLLRLSCSQSFGQGAVVIAVSEFLRRHPQVSIDLQL 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ I++  D  D A+R+   +   +LI R L        A+P YL     P   Q+L  
Sbjct: 128 ESRAINLVEDRIDLALRITNDL-DPNLIARPLALCPSVVCASPAYLAAQGTPQHPQDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        +     A     +  P    L  N  L ++   V G+GI + P Y 
Sbjct: 187 HNCLTYTWFGKSLWQ----FARQGEQVAIPVSGNLSANESLVLLTGAVEGAGIVMQPYYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  LV ++         +Y  Y    +    L+A  +F+  
Sbjct: 243 AAPLIASGQLVALLSGWQPQEMGIYAIYMSRRQMPAALRALLDFLVE 289


>gi|295700883|ref|YP_003608776.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440096|gb|ADG19265.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 304

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 139/293 (47%), Gaps = 9/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F  A+E + +S   +SR I+ LE  + I+LF R  R ++LT++G + +
Sbjct: 12  ISVFAAVVDAGTFAAASEVIGMSPPGVSRAIARLEKRLKIRLFNRTTRSVSLTDEGRRFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE   +     +    GKLR+       + +L   L +F+  +P+++I+ I
Sbjct: 72  EQVMPHLAGLEEAAVAAAGGASAVRGKLRVNLDPVCYRAILGQRLDQFMDAHPELEIEFI 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +   D+ ++  D A+R  +P ++S+L+ RKL+   +   AAP Y+     P   ++L+
Sbjct: 132 ARDHLGDLVLEGFDLALRFGEP-RTSTLVARKLLDTAVVTVAAPSYIARRGRPAKPEDLE 190

Query: 188 K--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL- 244
              H  + F +        + +       +  PR   L VN   +++  C+ GSGIA + 
Sbjct: 191 GPSHRCLEFRNSETGKPFPWEFHRKRKHVVIAPR-GRLTVNDPGALLNACLAGSGIAQML 249

Query: 245 ---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               ++++ +   L+ +  D     + +Y CYP       K +AF +F+   A
Sbjct: 250 LFGAEHLIAE-GRLINLFPDWPDERYPLYACYPSRHHIPAKTRAFLDFVAELA 301


>gi|264678206|ref|YP_003278113.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262208719|gb|ACY32817.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 313

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 135/297 (45%), Gaps = 12/297 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR+++ LE  +G++L  R  R L+LT+ G
Sbjct: 3   DLNDMLYFVEVVERGGFAAAGRALGIPKSRLSRRVAELEAHLGVRLLQRTTRKLSLTQVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +          + E   +P G +R+   + L Q +L   + EFL   P +Q
Sbjct: 63  ETFLRHGQAMRDAALAASDAVAEVQTEPRGTIRVTCPVTLAQTVLGELMPEFLKRCPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +++  +  D A+R+R  ++ S S++ ++L +      A+P  L+    P S
Sbjct: 123 VEMQVTNRPVNLVEEGVDVALRVRATLEDSGSMVVKRLDSSRQILVASPDLLQRQGTPRS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGS 239
           +++L          +    ++  + L  V     E R+       V+  L++    + GS
Sbjct: 183 LEDLQ-----LLDSMAMTAVDGHSSLLLVGPEGKEHRLQLQPRYVVDDLLTLKFAALAGS 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+  LPDY+ +D      LV+++     P   V+  +P        ++ F +F+  +
Sbjct: 238 GMCWLPDYMCQDELTRGTLVQLLPQWAPPRGIVHAVFPSRRGLAPAVRHFLDFLGER 294


>gi|262166068|ref|ZP_06033805.1| transcriptional regulator [Vibrio mimicus VM223]
 gi|262025784|gb|EEY44452.1| transcriptional regulator [Vibrio mimicus VM223]
          Length = 315

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 126/289 (43%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  
Sbjct: 8   QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +   Q E+++   + +G +R+  +   G   +   L++    YP++++++
Sbjct: 68  YSQCRELLTIVTNAQSEMEDQRDEVAGLIRLGLSQSFGTLHVLPALEQLRQQYPELKVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++        A+  YL     P    +L
Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASAEYLLRHGTPAQPMDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + +        +   W  + D      ++S    V+   ++    V G GIA L 
Sbjct: 187 MDHNCLIYRS---WERDYTRWSFSRDGQSQTVKVSGNYSVDLAEAVRDAAVAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y+++D      L++++ +         Y  YP       K  A   FI
Sbjct: 244 TYLLRDEFRTGQLIQLLPEWCANQQMPFYAVYPSRQHMPKKTSAVIEFI 292


>gi|170702944|ref|ZP_02893782.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170132146|gb|EDT00636.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 300

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 134/298 (44%), Gaps = 14/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++++  +   G+FT AA+ L L + ++++ +  LE E+GI+L  R  R +++T 
Sbjct: 1   MDRLQTMQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGIRLLNRSTRRVSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   H    ++   ++       +  V P G+LR+   + L + ++   L EF   YP 
Sbjct: 61  EGEAFHARCVQLLGSIDDAFASFPKQRVAPKGRLRLDIAVALAKTVVIPALPEFQQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++  D+  +  DC +R+   ++ SS+I R +  + M   A+P Y+     P 
Sbjct: 121 IELVLGASDQPADLIGEGIDCVVRVG-TLKDSSMIARTVGAVPMVTCASPAYIVRHGLPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ +L  H  + F        +   W    +  +   ++ S L  N+  +++   + G G
Sbjct: 180 TLDDLRAHRAVNF--FTGANRKVLEWTFRQNGELVNMKLPSSLLTNNSEALLSCGLAGLG 237

Query: 241 I------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I      AL P     D+  L+ ++  V      V   YP       K++ F +++  
Sbjct: 238 IVHALRPALQPSI---DSGQLIELLPGVPAEPKPVSVMYPNRAHLPDKVRVFIDWLTE 292


>gi|168232288|ref|ZP_02657346.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194472640|ref|ZP_03078624.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194459004|gb|EDX47843.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333397|gb|EDZ20161.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 321

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF  VAR+G F  AA +L LS S IS++I+ LE  +  +LF+R+ R + LT +G  
Sbjct: 21  EDLFVFVTVARNGGFARAALELGLSPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGEN 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +V  +++     L       +G + I  +   G   +   L  F++ YPDI ++
Sbjct: 81  ALGGAMQVVSEMDGFVSRLDNQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVK 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++++D+  +  D  IR+   I     I R+L T       +P YL+   +P S+  
Sbjct: 141 LTLTDREVDLVEEGVDIEIRVGDDIN-ELYIARQLATNRRILCTSPEYLERHGKPESVSA 199

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   K     NW+ T  +     R++     NS   ++ + + G GI L 
Sbjct: 200 LVQHDCLMIQE---KNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITLR 256

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    +   LVR++      +  ++  Y     ++ ++K   +F+  
Sbjct: 257 SEWDVAQYIERGELVRVLPQWYQEA-NIWAVYTRRSSSSDRIKICIDFLTE 306


>gi|91777741|ref|YP_552949.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690401|gb|ABE33599.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 323

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 131/302 (43%), Gaps = 8/302 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D +  ++    VA +G F+ AA++L ++ SS++R +  LE  +G  L  R  R ++LT
Sbjct: 17  HMDKFLAIKTLLEVADAGGFSKAAQRLGVATSSVTRLMDSLEASLGTALLTRTPRKVSLT 76

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G       ++V   L      + +S   P G LRI+      +  L  +L  FL   P
Sbjct: 77  DAGIAYVEQVAKVLDDLAEADESVFDSGASPVGALRISVPSTYSRLCLAPHLAAFLCENP 136

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +++ +   D+++D  D AIR+    + +SLI +KL     +  A+  YL+    P
Sbjct: 137 RVFLDVVVADHFADLALDRIDVAIRIGLADRDASLIVKKLADNPRYVVASHDYLERSGTP 196

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + Q+L  H  + F                            L  N+   +++  + G G
Sbjct: 197 QTPQDLADHECLRFAYGGGYRTHQTWTFQREGAGQRVDVRGHLLSNNLDILLEAVMAGRG 256

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLK 293
           IALLP++ V+ +     L+R+ E            VY  Y    + + K++A   F+  +
Sbjct: 257 IALLPEWQVEADIRAGRLLRLFEHFDASPQAGDAVVYAAYLPNRRQSSKVRALVQFLETR 316

Query: 294 AR 295
            R
Sbjct: 317 LR 318


>gi|157369623|ref|YP_001477612.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321387|gb|ABV40484.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 297

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +RVF  V  +G FT AA+ L + ++++++ I  LE  +  KLF R  R +++T
Sbjct: 1   MDHHLLAIRVFNRVVETGGFTRAADSLRMPKATVTKLIQSLEDHLQTKLFQRTTRSVSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ T +   +LE  +  + ES   P G LRI       + LL   L +F+  YP
Sbjct: 61  AEGECYYQRTVKWLAELEQMEGSMTESQSAPQGVLRIDVGGSTARQLLLPALPDFIARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQI L + ++ ID+  D ADC IR   P+  SSLI R+L  +     A P YL     P
Sbjct: 121 QIQIDLGVGDRLIDLINDSADCVIR-SGPLADSSLIARRLFELEWVTCATPAYLARHGTP 179

Query: 181 LSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVL 237
               +L++ + L  +   +   ++  +++        + R  +S  + N+ L+     + 
Sbjct: 180 QHPCDLEQGYPLAHYRHALNDRIQPLHFVDRGKEIDIQHRYHVSVNESNALLAAALAGLG 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              +     ++ +   DN  LV ++ D   PS  +Y  YP     + K++ F ++   
Sbjct: 240 ---MIQTFRFMAQPHLDNGELVSLLHDWQPPSEQMYVVYPSNRHLSAKMRVFIDWAIE 294


>gi|313669233|ref|YP_004049517.1| LysR-family transcriptional regulator [Neisseria lactamica ST-640]
 gi|313006695|emb|CBN88163.1| probable LysR-family transcriptional regulator [Neisseria lactamica
           020-06]
          Length = 303

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 141/289 (48%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSRTL-SPSLIARPLAEIEFALLASPDFLRRNGVPKTPEEVA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +       +   D     +  +         ++ ++ L + +    G+ I   P +
Sbjct: 186 GLPAV-LPTYTNRQQPDLT-RKSDGKKYRLELNPVIRTDNTLMMREMIKAGACIGYQPFW 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            V+ +    +LVR++ +  TP+  +   Y +    + K+++F +F+  K
Sbjct: 244 AVEHDLRCGSLVRLLPEYATPTVRLNAVYADRAFLSAKVRSFIDFLNEK 292


>gi|71279969|ref|YP_268177.1| LysR family substrate binding transcriptional regulator [Colwellia
           psychrerythraea 34H]
 gi|71145709|gb|AAZ26182.1| substrate-binding transcriptional regulator, LysR family [Colwellia
           psychrerythraea 34H]
          Length = 308

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 128/298 (42%), Gaps = 14/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  V   G+F+ AA++L ++ S++SRQIS LE  +GIKL  R  R L LTE G 
Sbjct: 10  LSDMAIFVTVIEQGNFSKAAKKLGVTPSAVSRQISRLEDALGIKLLQRTTRQLALTESGK 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++    +      + ++   SG LR++    L   +L+    EFL  YPDIQ+
Sbjct: 70  LTFDYCKQMVESADQAVNASRSATSTVSGLLRVSAPKSLANKVLRPLFVEFLKCYPDIQL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L + ++ +D   D  D  I +   PI++  L+  K+  +     A+P +L++   P   
Sbjct: 130 HLKVTDRILDPIHDGVDFLIHINDYPIEA--LVNIKIGRVEQVLCASPEFLQSHTPPTHP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L   + I  G+     M D  W    +      ++     +N           G GI 
Sbjct: 188 DDLKYLSCICLGE----NMVDNRWRFINENQQTTVQVAGSYLLNHSDMRRDAIEQGFGIG 243

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LPDYI +       L+ ++E           +   Y ++     K + F +F+  K 
Sbjct: 244 PLPDYIAQQGIKTGKLIPLLEGWQLTGSYQGDICLQYVQSKYLPNKNRVFIDFMKQKL 301


>gi|239817923|ref|YP_002946833.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804500|gb|ACS21567.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 296

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F  +A  GS T AAE L  S  ++ R ++ LE  +G++LF+R  R L+LTE
Sbjct: 1   MDRFKAMQTFVQIADQGSLTRAAEALGSSLPAVVRALAALEAHLGVRLFHRTTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        EV    +   + L+  + +P+G+L I   +  G   +   +  F+  +  
Sbjct: 61  EGRHYLPSAREVLLAADAADLALKAEAREPAGQLTITAPVLFGHMYVAPAITRFMQRHDK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++  ++L ++ +++  +  D  IR+  P+  SSL+ + L TI      +P YL     P 
Sbjct: 121 VRCTVLLHDRTVNLLEEGIDVGIRIS-PLADSSLVAQTLGTIRRVVAVSPDYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L     +      P             + I       L+ N     ++ C  G G 
Sbjct: 180 HPRDLHGAPCVRGRVDAPPQW----VFHERGKTISVTPSCRLEFNHLAPAIEACAAGMGF 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                Y V  +     L  ++ED   P   V   YP A     + +AF +++
Sbjct: 236 GTFFSYQVLPHVAQGRLKLVLEDFEPPPRPVSVIYPNARLLPARTRAFIDWM 287


>gi|283787189|ref|YP_003367054.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282950643|emb|CBG90315.1| LysR-family transcriptional regulator [Citrobacter rodentium
           ICC168]
          Length = 311

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  +GSF+ AA  L  + + ++++I  LE+ +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHTGSFSAAAAALGQTPAFVTKRIQILESALATTLLNRSARGVALTECGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    E+ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTRYQRLVDEVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID++ D  D  IR+   I     I   L        AAP YLK   EP ++QE
Sbjct: 129 FELFDRQIDLAQDNIDLDIRINDAIPD-YYIAHLLTKNSRILCAAPAYLKKYSEPKTLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGKEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V+    +  LVR++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVQPFLASGKLVRVLPEYAQ-SANIWAVYREPLYRSVKLRVCVEFLAA 294


>gi|77360330|ref|YP_339905.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76875241|emb|CAI86462.1| Transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 317

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 121/291 (41%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD +  F  V   GSFT A + + LS + ISR +S LE  +  +L  R  R + LT++G 
Sbjct: 31  WDGIDEFIAVGEEGSFTAAGKAIGLSVAHISRHVSALEQRLNTQLLTRTTRKVVLTKEGE 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   + H ++     L +    P GK+ +   +  G++ +   +  F+  +PD+++
Sbjct: 91  VFLHQIKHLQHAMDDATQSLAQQQSTPKGKINLTAPVMYGESFIMPIVHNFMHDHPDVEV 150

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L N+  ++     D AIRL   ++ SSL  R+L         AP YL    EP ++ 
Sbjct: 151 VATLSNEQENLLEGGFDLAIRLGH-LKDSSLKARRLSARRFIMCCAPDYLTRFGEPHTLG 209

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  +       +  E         R         LQ NS  +++     G GI  L
Sbjct: 210 ELINHQCLVGNSRYWRVNEG-------GREKHIKIAGRLQCNSGWALVDGAKKGLGIIQL 262

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P+Y +++      LV I+         V+  YP        ++   +++  
Sbjct: 263 PNYYIENELKTGQLVPILTSYQPLQEGVWGVYPPRQFVATNVRVLLDYLVA 313


>gi|115351408|ref|YP_773247.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115281396|gb|ABI86913.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 301

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 134/295 (45%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE+++G++L +R  R  TLT+ G
Sbjct: 5   DLPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESQLGVRLLHRTTRQQTLTDDG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  + +      G LR+    +LG+  +   +  F   +P++ 
Sbjct: 65  AQFHAQVLRILAEVERAETLMSDRRGTVGGVLRVTAPGELGRLRIAPLIAAFQRRHPELI 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P Y+     P   
Sbjct: 125 VQLMLTDAIVDLLAHDIDVAVRIGS-LADSTMIARELAPNHRVLCASPSYVAAHGLPAEP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I  GD                  +     + L  N   +     + G+GIAL
Sbjct: 184 AELRAHRCIVMGDQPRAEWR----FDGAHGTVAVEVTAALLTNDGGAARTLALEGAGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V    D   LVR++     P+  ++  YP       +++AF +F+  + R
Sbjct: 240 KSIWDVGADLDAGRLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVDFLREQLR 294


>gi|159045746|ref|YP_001534540.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157913506|gb|ABV94939.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 327

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R L  T
Sbjct: 18  MSY-LDNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEEHLGVRLFQRTTRSLAPT 76

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +QG        EV   +E  + ++   +  P G L +A  + +G+ L+   +  FL LYP
Sbjct: 77  DQGKTFFGAACEVLEAVENAEAQVINMTDNPKGSLYVAAPLGVGRRLIAPQVPGFLELYP 136

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L + ++ +D++ +  D A  L  P + S+L  RK+  +     A+P Y+     P
Sbjct: 137 EVRMRLRMTDRKVDLTTEGLDLAFFLGHP-EDSNLRIRKIADVRRVLCASPDYIARRGHP 195

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +   L  + H  +      P   E    L T   P         + +    +  + + G
Sbjct: 196 QNGDALVSEGHECLNL--RFPGATEFQWRLVTDQGPKRFRVAGRYESDDGDVLTDWALAG 253

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIA+ P + V D   +  LV + ED       +   +    +   K + F  +I  K  
Sbjct: 254 HGIAMKPVFEVTDHLQDGRLVPVCEDTPPEPIQMACLFTHRKRQDPKTRLFMEYIIEKIS 313

Query: 296 D 296
           D
Sbjct: 314 D 314


>gi|300704962|ref|YP_003746565.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299072626|emb|CBJ43976.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 298

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA ++ ++ S++S+ IS LE  +G++L  R  R +  T  G
Sbjct: 5   NFNDLYAFLVVARESSFTKAANEMGMTSSALSQTISALEARLGVRLLSRTTRSVAPTTAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  S  +  +E     LQE   +P+G +R+ T     + +L   L   +  YP+IQ
Sbjct: 65  ERLLQKLSSGFGSIENELQALQELRDRPAGTVRLTTVGHAAETVLWPKLLPLIKAYPEIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D + +DI  +  D  +RL   I    +  R      M   A   Y  +   P   
Sbjct: 125 VEISVDYRLVDIVAERFDAGVRLGGLIDKDMVAIRISPDKRMAVVATTDYFCDHEVPRHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P       W    D  +   P       N    ++Q  + G+GI 
Sbjct: 185 SELGSHTCINL--RLPSTGALLPWSFERDGVVLSVPVAGQYIFNGSGLVLQAVLSGAGIG 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+ I ++      LVRI+ED   P    Y  YP   + +   +   + +  +
Sbjct: 243 CVPEDIAEEYVRAGRLVRILEDWCKPLDGYYLYYPSRRQPSRAFQLVVDALKHR 296


>gi|283788428|ref|YP_003368293.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282951882|emb|CBG91598.1| putative LysR-family transcriptional regulator [Citrobacter
           rodentium ICC168]
          Length = 299

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 136/288 (47%), Gaps = 10/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA +GSFT AA++  L +SS+S++IS LE +VGI+L  R  R L LT  G 
Sbjct: 5   LQDMALFALVAENGSFTAAAQKAGLPKSSVSQRISQLEQQVGIRLINRTTRKLNLTYAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E+    E  +  LQ     PSG+LRI +   +G  LL      F   YPD+ +
Sbjct: 65  HYLVHCREILAASERAEYALQRLRDNPSGRLRITSPAGIGATLLARLNARFQQRYPDVNL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ +D+     D A+R  +P Q S+LI R +     +  A+P YL         +
Sbjct: 125 EVSISDEMLDLVDSGFDVALRTGRP-QDSTLIGRMIGHCPRYLLASPDYLSRYAPLRHPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  IT      K   ++ +    +     P    L  ++ +   +  + G+GI LL
Sbjct: 184 QLPEHQCITH-----KAWTEWVFHRGDEDYQHVPDRVHL-TDNLVYARESAIAGAGITLL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P ++++D      L +++ +       ++  YP    N+  L ++  F
Sbjct: 238 PAFMLEDRVEKGELTQVLAEWTVAGNDLWLVYPSRKLNSPALMSYIEF 285


>gi|209520633|ref|ZP_03269386.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209498916|gb|EDZ99018.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 336

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 132/299 (44%), Gaps = 9/299 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+ 
Sbjct: 61  ALTEAGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSTILPEFMH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ +D+  D  D A+R+R  P ++++++ R L         AP  L+ 
Sbjct: 121 RYPEVRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTEQMLVGAPSLLQQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL+  +L++    T           +N ++             L     ++I +  +
Sbjct: 181 NAPPLTPADLNRFE--TLDVPTSDGRHVYNLISPDGTRHAHEHEPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G GIA LP+ +         L  +M     P+  +Y  +         ++AF +++  
Sbjct: 239 AGVGIAALPEMMYGAALRAGQLSPVMPGWSFPTPQLYAVFVSRQGMVPAVRAFVDYLVE 297


>gi|206559334|ref|YP_002230095.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035372|emb|CAR51248.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 295

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 132/287 (45%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R +  +E  +G +L  R  R L+LT+ G    
Sbjct: 7   MRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAGHLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  +     +P G L+IA  +  G ++L   +  F + +P I  ++ 
Sbjct: 67  AQIRHVIDEIDRVEETIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVPEVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D  + L + I +++L++R L  +     AAPHY+     P    +L 
Sbjct: 127 IVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLKQIVCAAPHYVDRHGAPAHPHDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  ++F          F+   T  R    P  S    N+   I  + + G GIA+LPD+
Sbjct: 187 SHACLSFHADFMGEYLSFDHDQT--RITVRPNKSA-SSNNVGLIRNWALSGMGIAVLPDF 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V+   D+  L+ ++      +  +   YP       K + F + + 
Sbjct: 244 LVQSNLDDGQLLALLPGYRLETLEMNVAYPSRRHFPRKARLFVDHLI 290


>gi|170719962|ref|YP_001747650.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757965|gb|ACA71281.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 298

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+VF  V   GS + AAEQL  + S++SR +S LE ++G  L  R  R + LT
Sbjct: 1   MKTRSEELQVFVAVIDCGSISAAAEQLGQTPSAVSRTLSRLEAKLGTTLVNRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G      +  V  +++  +  L  +   PSG+LRI        + +   + EF   YP
Sbjct: 61  EEGRFFLERSRLVLEQMDDMEERLSMNRQTPSGRLRINAAAPFMLHAILPWIGEFRSQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  ID+     D AIR+ + +  SSL  R L    +   A+P YL+    P
Sbjct: 121 DIELELNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARSLGCSPVQVLASPAYLERHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L+ H L+ F              A  DR    P    L  +S  ++ Q  + G G
Sbjct: 180 QHVEDLNHHCLLGFSQPESLNQWPLRH-AQGDRWAIRP---ALIASSGETLRQLALAGEG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITP----SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L  ++  ++    R+   +          ++  Y    +   +++ F +FI  K   
Sbjct: 236 IVSLSHFMTHEDIRAGRLQVILSAANNGYRQPIHAVYYRNTQLALRIQCFLDFIQRKLAM 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|50123139|ref|YP_052306.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613665|emb|CAG77116.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 295

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F   +  GSF  AAE L +S   +++Q++ LE  +G++L  R  R  +LT+
Sbjct: 1   MDRLTSMKIFVKASELGSFVAAAEVLGISPQMVAKQVAWLEARLGVRLLNRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     V  + E      +E  V PSG +++   +  G +LL   +  +L  YPD
Sbjct: 61  IGLRYYERCKVVLAEAEDADAIAREMQVTPSGVIQVNAPVTWGSHLLAPFITRYLARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            QI L L+++ +D   +  +  IR+ + +  SS++   L    + A A+P YL     P 
Sbjct: 121 TQIALTLNDRIVDPIEEGFEVIIRIGE-LADSSMVAWPLQPYSLIACASPDYLAREGSPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +   L +H  + +G           W+   D    E R    L  N + +++   + G G
Sbjct: 180 TPSSLSRHACLIYG--ARAVATSCRWVFQKDGKPEEVRPEGRLFANDWNALLHAAIAGYG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I L P+ +++   D   LV+++ D   P+  V+   P   ++  K+K F + +  
Sbjct: 238 ITLGPEAVLRKEIDRGRLVQVLSDYNGPARPVHVMVPMGRRSAVKIKTFVDAVRA 292


>gi|115360572|ref|YP_777709.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285900|gb|ABI91375.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 301

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 131/301 (43%), Gaps = 11/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++
Sbjct: 1   MDKFSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    ++   L      + +   +PSG LR++  +  G + +  ++  FL  YP 
Sbjct: 61  AGAVYYARAKQLLEALAEADALVADRGDEPSGPLRVSVPVAYGMHRIAPHVGAFLARYPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L +  +D+     D AIRL +   S+ ++ R+L T   +  A+P YL     P 
Sbjct: 121 LDLDLQLTDARVDLVTSRIDVAIRLGEAAPSAEVVARQLGTFRRYVVASPDYLDAHGTPS 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  H  + F     +    F                 L+ N    +    + G GI
Sbjct: 181 TPGELVDHGCLRFHFGGDQQAWSF---VDARGATKVLVTGRLKSNHSEVLRAAALDGGGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD++V  +     L R+ E            V   Y    + + ++ AF +F+  +A
Sbjct: 238 ALLPDWLVDADVRAGRLRRLFEQYDVVPDAARSIVTALYLPNQRGSKRVTAFIDFVEAQA 297

Query: 295 R 295
           R
Sbjct: 298 R 298


>gi|300689871|ref|YP_003750866.1| transcriptional regulator, lysR family [Ralstonia solanacearum
           PSI07]
 gi|299076931|emb|CBJ49544.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 303

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 57/294 (19%), Positives = 122/294 (41%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   GS   AA    ++   I R+I+ LE  +G+KL +R  R + +TE
Sbjct: 1   MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVKLLHRSTRRIAVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG+       +   +L+  ++ + E   K +G L ++     G+  +  +  +FL   PD
Sbjct: 61  QGAVFMEQCKKALSELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPDFLRANPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++   L ++ +D+  +  D  IR+   I   + +  +L +        P Y      P 
Sbjct: 121 VRLSFNLTDRVVDLVREGYDLGIRIGGAI-DPNFVAIRLASNKRVVCGTPAYFARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +HN + F     +    +       R +       L  N    + ++   G G+
Sbjct: 180 TLDDLSRHNCLAFNLQGGQQRGWY--FQHNGRMVTVKVSGNLDCNDGELLHRWMGEGLGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                + ++   ++  L+ +++D   P + +   YP+      K++ F   +  
Sbjct: 238 GWRSTWEIQPELESGALMTVLDDYALPDYDILAVYPQQRPVPAKIRFFIEHLKA 291


>gi|298487058|ref|ZP_07005109.1| Probable transcription regulator protein of MDR efflux pump cluster
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298158411|gb|EFH99480.1| Probable transcription regulator protein of MDR efflux pump cluster
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 305

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 128/296 (43%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      ++VF  +A  GSFT  AE   + +  ++R I  LE  + ++LF R  R + LT
Sbjct: 1   MDL-LQSMQVFAKLAELGSFTKVAEATQIGRPHVTRIIQDLEASLDVRLFQRTTRSVKLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G + +         L  T      +     G LRI       Q     +LK F   +P
Sbjct: 60  AEGQRFYERVKNNLADLAETTSMFDRNGSTLRGLLRIDIPAAFSQRSFMESLKGFTQAFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ L + ++ +D+  +  DCA+R+ + +  SSL+ R++    M   AAP YL+    P
Sbjct: 120 EIELALGVTDRTVDLVAEGIDCALRIGE-LPDSSLVVREIGRATMVTCAAPSYLQAFGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ EL  H  ++F  L  +      W  +++      P    + VN   + +Q  + G 
Sbjct: 179 ETLDELAGHCGVSF--LSGQSNRPLPWHFSLNGDDFPVPPRGGITVNESNAYVQCGLAGF 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI   P   V+    +  LV ++E        V   YP       +++AF  ++  
Sbjct: 237 GILQAPGITVESFLASGELVEVLEAFRPLPRPVSVLYPSRTHLAPQVQAFVAWLKE 292


>gi|92112952|ref|YP_572880.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796042|gb|ABE58181.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 309

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S     LR+F  VA +GSF  AA Q  L  SS+SR I+ LE  +G +L YRH R + LTE
Sbjct: 4   SISLVALRLFVRVAATGSFAGAARQQGLPASSVSRHIAALEKALGQRLLYRHTRAVRLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + ++   E+   L+    +   ++ +P G LRI   +  G+  +   L  F   YP 
Sbjct: 64  VGERYYQQVREILDTLDIATEQAAGTASQPQGLLRINAPVAFGRRHIAPRLASFQARYPR 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+ +L L +  ID   D     +     +  SSL+ R+L   H    AAP YL     P 
Sbjct: 124 IETELTLSDAFIDPVQDGV-DVVVRVGALNDSSLVARRLAEQHFVVCAAPDYLAQWGIPA 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L +HN + +          F         + E R   L+ N+  S+++  + G GI
Sbjct: 183 TPESLVEHNCLIYKGTRGVQQWYFRSEGARRYQVREVR-GNLRSNNAESLLEAALQGQGI 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRN 288
            L P +++    +   L+ ++ D           ++  +PE    + K+ AF  
Sbjct: 242 VLFPTWLIHAELEAGRLIPVLSDWEASGEPAPQGIHAIFPENRLRSSKVAAFLE 295


>gi|21233148|ref|NP_639065.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770088|ref|YP_244850.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114995|gb|AAM42977.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575420|gb|AAY50830.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 310

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 133/301 (44%), Gaps = 14/301 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D +D ++ F  V  SGSFT AA+ L +S++++++ +  LE  + + L  R  R + +
Sbjct: 1   MAMDRFDAMQAFARVVESGSFTKAADTLQISRATVTQLVQQLEARLRVTLLNRTTRRVAV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G+  +     +   ++  +  L  +S  P G+LR+     L + +L   L +F   Y
Sbjct: 61  TADGAAYYERVVRLLADMDDAETSLSVASSVPRGRLRVDVPSPLARLILMPALPDFHARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDIQ+ +   ++ +D+  +  DC +R    I   SL+ R +  +    YAAP YL     
Sbjct: 121 PDIQLHMGASDRRVDLIGEQIDCVVR-GGTITDQSLVARHVGDLQAGVYAAPGYLARLGM 179

Query: 180 PLSIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQY 234
           P   +EL+   H  + F     +  +   W   + R     ++     +  +   + +  
Sbjct: 180 PAHPRELEDTAHRTVGF----MRWGDGVPWPLVMQRDGEHVQVHGRYVVASDDGNAYLAA 235

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G G+  LP Y+ +       L+ +  D       +   +P     + KL+ F +++ 
Sbjct: 236 GLAGMGVLWLPQYMARAPLSRGELLPVFADWQLDPMPLSIAFPPNRHVSAKLRVFIDWVI 295

Query: 292 L 292
            
Sbjct: 296 A 296


>gi|327485962|gb|AEA80368.1| Transcriptional regulator, LysR family [Vibrio cholerae LMA3894-4]
          Length = 308

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 130/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE
Sbjct: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP+
Sbjct: 61  SGVLYYQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  SSLI RKL        A+P YL     P 
Sbjct: 121 VVPYLYLNDNISNLAESGLDVVIRYGE-LADSSLISRKLAPSRRVLCASPAYLARKGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W    +       I      +    I Q+ + G G
Sbjct: 180 TPQDLVQHDCLA---MVRSNEEMKTWHFQENEQHKVITIVPKSFADDGEVIRQWALAGMG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+D+     LV +++  +             +   Y        +L+ F +F
Sbjct: 237 IALKSILDVQDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LIEQ 300


>gi|158422415|ref|YP_001523707.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158329304|dbj|BAF86789.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 345

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 127/296 (42%), Gaps = 6/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R F     S SF+ AA +L +S + +S +I  LE  +G +LF R  R ++LTEQG 
Sbjct: 39  LENMRAFTQAVESDSFSEAARRLRVSPNVVSHRIQVLEKHLGCRLFNRTTRRMSLTEQGR 98

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +E    ++T +  + E    P G LR+   + LG+ LL      +   YP I +
Sbjct: 99  VYYETVTEALRLIDTAETSISELGALPRGALRVTAPLHLGRRLLAPMAARYQDAYPQIDV 158

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L     D+  +  D A+RL    + SS I RK+  +     AAP YL     P    
Sbjct: 159 RLRLSEHMPDLIAESIDVALRLA-TFEDSSTILRKVAEVDRILCAAPAYLDRHGVPEKPA 217

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +       + +     L    + +  P    L+ +    +  + V G GI + 
Sbjct: 218 DLLNHQCLLMRHATSRELRWM--LTDKGKDLAVPVAGHLEADDGDVLTVWAVEGRGIVVK 275

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P + V D      LV ++E       T+   YP       K+K F + +   AR +
Sbjct: 276 PRFEVADALAAGQLVPVLERHPPRPMTLAVLYPARQLVPLKVKTFADMLVEDARRY 331


>gi|240138742|ref|YP_002963214.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
 gi|240008711|gb|ACS39937.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
          Length = 320

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 130/290 (44%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF VVA + SF  AA++L LS++++S+ ++ LE  +G +LF+R +R L LTE G
Sbjct: 6   DFEAWAVFAVVADALSFARAADELGLSKATVSKAVARLEGRLGARLFHRTSRRLALTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  +    +++  P G++R+A  +  G   +   L EFL  +  + 
Sbjct: 66  RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHVAPVLPEFLAAHAQVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     A P YL+    P   
Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLERHGPPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L     + +  L       F         +       L+ N+  +++     G G+A+
Sbjct: 185 EDLKARACLGYAYLPTPDRWPFT--NAAGETVTIVPEGPLRANNADALVPALRAGLGLAV 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            PD+ + ++     L R+M D   P   +    P  L    ++ A   F+
Sbjct: 243 QPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292


>gi|227114358|ref|ZP_03828014.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 295

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 139/295 (47%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF   +  GSF  AAE L +S   +++Q++ LET +G++L  R  R  +LT+
Sbjct: 1   MDRLTSMSVFVKASELGSFAAAAEALGISPQMVAKQVAWLETRLGVRLLNRTTRKQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     V  + E      +E  V PSG +++   +  G +LL   +  +L  YPD
Sbjct: 61  IGLRYYERCKVVLAEAEDADAVAREMQVTPSGMIQVNAPVTWGSHLLAPFITHYLARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            QI L L+++ +D   +  +  IR+ + +  SS++   L +  + A A+P YL     P 
Sbjct: 121 TQIALTLNDRLVDPIEEGFEVIIRIGE-LADSSMVAWPLQSYSLIACASPDYLAREGVPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
           +   L +H  + +G  +        W+   D    E R    L  N + +++   + G G
Sbjct: 180 TPASLARHACLIYG--LRTAATSCRWVFQKDGKSEEIRPQGRLFANDWNALLHAAIEGYG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I L P+ +++   D   LV+++ D   P+  V+   P   ++  K+K F + +  
Sbjct: 238 ITLGPEVVLRKEIDRGRLVQVLSDYNGPARPVHVMVPMGRRSAVKIKTFVDAVRA 292


>gi|218708886|ref|YP_002416507.1| LysR family transcriptional regulator [Vibrio splendidus LGP32]
 gi|218321905|emb|CAV17895.1| transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 314

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 130/289 (44%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ + +   FT AA+ L++S S IS+Q++ LE  +GIKL  R  R LTLTE G   
Sbjct: 8   QMVIFHALIKHEGFTSAAKSLNVSVSHISKQVALLEDSIGIKLVQRTTRSLTLTEAGEVF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   ++++ ++  Q+++       SG  RI  +   G   +   + +   LYP ++I++
Sbjct: 68  YQHCEQLFNTVKAAQMDMDSQRDDISGIFRIGLSQSFGTLHIIPAIDQLRQLYPQLRIEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     I ++L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMIEERLDLWITNNEDLP-EGYIAQRLADSQFVVAASPDYLIKAGTPHVPSDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + +     +  +  +W     +     +++    V+   ++    V G G+A L 
Sbjct: 187 IDHNCLIYRS---RERDYTSWAFDNGQENLSVKVAGDYSVDLAEAVRDAAVSGWGVAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
            Y+VK+      L++++ +         Y  YP       KL A   FI
Sbjct: 244 TYLVKEEFRTGKLIQVLPEWRASQLMPFYAVYPSRKNMPKKLSAVIEFI 292


>gi|117921949|ref|YP_871141.1| transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614281|gb|ABK49735.1| transcriptional regulator [Shewanella sp. ANA-3]
          Length = 300

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 133/295 (45%), Gaps = 13/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG + 
Sbjct: 6   AMRSFIEVANCGSFTKAAEHLDLSRLQVSRHIQEIEQWLSLRLLHRTTRSVSLTLQGEEA 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    V  ++   +      + +  G +RIAT + LGQ+ L   +  F+ L+P + IQL
Sbjct: 66  LQYCQRVLSEVAAMESRAHSHNTELVGSIRIATPVGLGQHSLFDVVDRFIKLHPKVNIQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +    +  +  D A+R  +     +LI RKL++I     AAP YL          +L
Sbjct: 126 LMSDSFAQLVDERVDVALRYTEQ-PDENLIARKLMSIDAVLCAAPSYLAQAEPLTVPNDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +          + +  L      + +P +  L  N    ++   + G GIA LP 
Sbjct: 185 LSHNCLIHSS-----QQHWQLLKEQQSELIKP-MGNLMANEMGVLVSAALRGHGIAYLPC 238

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +      +  L  ++ +   P  T++  Y         ++AF +F    A+ W+
Sbjct: 239 DLANPYLASGQLQEVLPEYTAPGQTLWAVYLSRSYQQALVRAFIDF---TAQQWQ 290


>gi|295095965|emb|CBK85055.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 295

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 130/288 (45%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS ISR +  LE  +G++L  R  R L+LT  G
Sbjct: 7   NYNELYLFIQVVREGSFTAAAQRLGLAQSGISRSVRELEERLGVRLLVRTTRKLSLTHAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++     +  L+T    L      PSG +RI  +    +  L   L  F   YPDI+
Sbjct: 67  EQLYQTAGSAFDALDTGLTRLAHYRQTPSGTVRINASQHAIEKCLLPKLAIFKQRYPDIR 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ +++ +DI  +  D  +RL   +    +  R    + M   AAP + +    P + 
Sbjct: 127 LELMNESRFVDIIAERFDAGVRLGPEVGQGMIAVRITPDMEMAVVAAPAHFRRYGFPQTP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +LD H  I +        +    L    + +          +      +   LG G+A 
Sbjct: 187 ADLDAHPCIAYQFADGNHYQWE--LVQDGKHVTHRPEGQWAFSDSYMEAEAARLGLGLAY 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  +V D+     L+R+++        +Y  YP     +  L+A  +
Sbjct: 245 VPVELVADDLERGTLIRVLQRYSLRMDGLYLYYPH-RNVSPALRAVID 291


>gi|104783527|ref|YP_610025.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95112514|emb|CAK17241.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 315

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 131/292 (44%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA+ GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRESHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + N+  D+  +  D +I L   +  S  + ++L   +    A+P Y+       
Sbjct: 121 VTFDLTMANRVPDLLDEGYDVSIVLASELPDSGFVSQRLGITYSIVCASPEYVARHGTAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L KH  +     +   +E + +     + +     S  QVNS  ++        G+
Sbjct: 181 KPADLLKHACLRMVSPVIP-LEKWLFDGPEGQEMVNITSSPFQVNSADAMKTAIRSSMGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP Y   D   + +LVRIM +       +Y  YP       K+K +  ++
Sbjct: 240 GVLPIYSAIDGLRDGSLVRIMPEYRLQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|330941893|gb|EGH44618.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 309

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 132/290 (45%), Gaps = 4/290 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF +VA  GSFT AAE+L+L+ S+IS+ I+ LE  +  +LF R  R L+LTE G 
Sbjct: 7   LKGIDVFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  + V   LE  +I L  +  +P GK+RI      G+  +   + +F+  +P +Q 
Sbjct: 67  TFYRTCTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPLSI 183
            +   ++ +D   +  D  +R+       + +  +   T  +   A+P Y+    +P ++
Sbjct: 127 HVSFSDRYVDPVHEGIDIVVRIGGSDAWPAAMAHQFFGTQKLIFCASPEYVNQYGQPKTV 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +LD H  I +G      +  +                 + V      +   + G GIA 
Sbjct: 187 SDLDDHQCIGYGQNDGMAIPWYFKGRQPGGMERRIMHPHIAVGDGEGEVMAVLAGLGIAQ 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++V+   ++  LV ++ D+ T    +   +  + +   K+ A   ++
Sbjct: 247 LPTWLVQCHLNSGILVEVLPDLATEGLPMNLVWLRSREALPKVSALVAYL 296


>gi|323967147|gb|EGB62571.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|327253689|gb|EGE65318.1| hypothetical protein ECSTEC7V_1114 [Escherichia coli STEC_7v]
          Length = 302

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLIPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + +   ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELDAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED IT        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWITERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|262089562|gb|ACY24661.1| LysR family transcriptional regulator [uncultured organism]
          Length = 315

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 126/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L L +S +SR+++ LET +G++L  R  R L+LTE G
Sbjct: 3   DTNDMLYFAEVVERGGFAAAGRHLGLPKSKLSRRVAELETRLGVRLLQRTTRKLSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    V    E     +++   +P G +RIA  + L Q+ L   +  FL  +P ++
Sbjct: 63  EVYLRHCLAVRDAAEAAAEAVEQVQTEPRGTIRIACPVTLAQSTLGPIMPLFLARHPLVK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + + + N+ +D+  +  D A+R+R  +  S SL+ + L   +    A+P  +    +P  
Sbjct: 123 VDMRVSNRVVDLVEEGIDVALRVRSTLDDSGSLVVKTLGGSNTFLVASPLQIARQGKPGL 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L   + +    +  K       L                 +  L++    + G+G+ 
Sbjct: 183 PDDLATMDTLAMSSIDGKAT--LLLLGPSGARHTLVHQPRYVADDLLTLKFAVLQGTGLC 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY+ +   ++  LV ++     P    +  YP        ++ F +F+
Sbjct: 241 FLPDYMCRRELEDGRLVHVLPGWAPPRGIFHAVYPSRRGMVPAVRRFLDFL 291


>gi|221199797|ref|ZP_03572840.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221207534|ref|ZP_03580543.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221172737|gb|EEE05175.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180036|gb|EEE12440.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 320

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 139/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ +++ 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAERFPDVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YLK    P ++ +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHILLVASPEYLKKHGTPETLADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN +             +  A   R         L VN    +    + G+GIALL  
Sbjct: 187 ARHNYLRRDSNASTLDAMLSDAAAASRVALN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     L+ ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIEAGRLMPVLVDAVPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|171322714|ref|ZP_02911464.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171091943|gb|EDT37406.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 320

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + + 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVIVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +L
Sbjct: 127 LSDRVVDLIEEGYDIAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +                A   R         L VN    +    + G+GIALL  
Sbjct: 187 AHHNYLRRDSNSTMLDSLVIDAAAASRVNLN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|170702069|ref|ZP_02892984.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133028|gb|EDT01441.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 310

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 129/302 (42%), Gaps = 13/302 (4%)

Query: 1   MSFDWDKL-----RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L      +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R
Sbjct: 1   MQRKFDDLLLGSIELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G +      +   +L   + E       P+G LRI+     G   +   L  F
Sbjct: 61  QIRLTDSGRRYFEQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YPD+ ++  L N++ID + +  D AIR R P   SSL+ RKL    +   A P YLK
Sbjct: 121 RERYPDVCVETHLSNRNIDFAEEGFDLAIRGRAP-ADSSLVARKLEDAELVVVATPGYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI--MQ 233
               P ++ +L  H  I F   +P       WL        E   +     S   +  + 
Sbjct: 180 RAGVPRAVDDLHAHECIQFE--LPSSGRPIPWLFNDGAAEIEIATTGGYGTSGDVLAGVT 237

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     +IV+ +     L  ++      S      YP A   + +++ F +F+
Sbjct: 238 LARNGAGLFQTYRFIVERDLREGTLAEVLSGQGGRSRPFMLLYPHARYLSSRVRVFVDFL 297

Query: 291 FL 292
             
Sbjct: 298 VE 299


>gi|162148452|ref|YP_001602913.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787029|emb|CAP56614.1| putative transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 294

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 133/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +RVF  V    SFT AA  L L +S+++  +  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFDAMRVFTRVVERRSFTLAASDLGLPRSTVTDAVKRLEARLGVRLLQRTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  HR    +   LE  +     +  +P G LR+     L ++ +   L +F+  YPD
Sbjct: 61  DGAAYHRRCLALIADLEDAEAAFGGA--RPRGMLRVDVHGTLARHFVLPRLPDFMAAYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++ +D+  +  DC +R+   +Q S ++ R++  +     AAP YL     P 
Sbjct: 119 IELTLSEGDRLVDLIREGIDCVLRVGD-LQDSDMVARRVAMLEEVTCAAPSYLARFGMPG 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +  LD H ++ F       +    ++   D       +S + VN   S++    LG G+
Sbjct: 178 DVDALDGHRMVGFRSSATGTLLPLEFMVG-DSLRTITLLSPVAVNGAESLVAAARLGLGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V  +     LV ++ D       V   YP   +   +++ F ++I
Sbjct: 237 VQVPRYHVVQDLGQGTLVVVLPDHPPSRTPVSLLYPRHRQVAPRVRVFIDWI 288


>gi|317404268|gb|EFV84701.1| hypothetical protein HMPREF0005_04599 [Achromobacter xylosoxidans
           C54]
          Length = 314

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 129/292 (44%), Gaps = 7/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA + SFT A+E+L LS+S+I + I+ LE  +G +L +R  R ++L+++G 
Sbjct: 12  LGDVLAFVRVADAQSFTLASERLGLSRSAIGKCIARLEQGLGARLLHRSTRSVSLSDEGR 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +++     +      P G+LRI   + LG+  +   L  +L  +P+++ 
Sbjct: 72  LFYEHAQRILAEVDNATGAMASRQEAPRGRLRIDLPVALGRLHIMPLLAGYLRQWPEVEA 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +   D+  D  D AIR+      S L++R L    +   AAP YL+    P S  
Sbjct: 132 DVSFSDDYADLVRDGIDLAIRIGGE-ADSRLVRRVLAPHRLITCAAPAYLERHGVPASPD 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H  + F  +       +   A+  +         L++    ++    + G+GI  L
Sbjct: 191 ALARHRTLAFTHMGAPVPWRY---ASHGQERSVAVAGRLRLGDTEALRDAALEGAGIVQL 247

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             ++V ++     LV ++E    P   V   YP       K++   + I  +
Sbjct: 248 GAFLVGEDLRQGRLVPLLETHAPPGAPVCAVYPHRRHLAPKVRRLIDEIAAR 299


>gi|238793749|ref|ZP_04637371.1| HTH-type transcriptional activator aaeR [Yersinia intermedia ATCC
           29909]
 gi|238726990|gb|EEQ18522.1| HTH-type transcriptional activator aaeR [Yersinia intermedia ATCC
           29909]
          Length = 303

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LETE+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVECGSFTGAARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMTNFSWLEYSVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLNAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGEVEILFKKYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|170735217|ref|YP_001774331.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821255|gb|ACA95836.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 310

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 124/295 (42%), Gaps = 5/295 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D+    VF  VA   SF  AA +L ++ S++S  +  LE  +G++L  R  R  +LTE
Sbjct: 14  NVDFFSFTVFLAVAARRSFRGAATELEITPSAVSHSVKALERRLGVRLLNRTTRSTSLTE 73

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L          ++    E+ +    PSG +RI  +    + +L+  L  FL  YP+
Sbjct: 74  AGERLAAKLRPAVSIIDEAMREVDDLRSAPSGTVRINASEGAIRLILRPVLARFLKSYPE 133

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++ D +  DI     D  IRL + +    +    +  +   A A+P Y      P 
Sbjct: 134 VHLDIVSDGRLTDIVAAGFDAGIRLAEAVPQDMVAIPLMGNVRFAAVASPAYFAAHGRPA 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H+ I F        +                   L +     ++   + G GI
Sbjct: 194 TPHDLYRHDCIRFRFESGSIYQWE--FERRGVSETIDVSGSLTLTDQPLMVDAAMDGIGI 251

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A +PD++V +   +  L R+++D   P   +   YP     +  L+A   FI  +
Sbjct: 252 AFVPDHLVIEPLRDGRLERVLDDWCAPFPGLCLYYPGHRHVSQALRALIAFIKSE 306


>gi|270264193|ref|ZP_06192460.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041842|gb|EFA14939.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 303

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 119/292 (40%), Gaps = 4/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L  F  V  SG F+ AA  L+++  ++S+QI  LE+ +G  LF R  R + +T++G
Sbjct: 3   NLDDLEAFVRVVDSGDFSSAARSLNVTAGAVSKQIRRLESSLGATLFERSTRRIRVTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++         L       ++     SG + I++        L   ++ F   +P++ 
Sbjct: 63  LQIYECVKRGLSSLHEAYSIAEQGRQSLSGNIAISSPTTFNNYFLIEAIECFKQQHPEVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L   N+ +DI  +  D A+R  + +  S L+ RK++  H     +P YL     P  +
Sbjct: 123 FYLDSANRVVDIYSEGIDLAVRSGQ-LSDSQLVARKVLEQHRVLVCSPSYLAKISPPTHV 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L   N + F                       P    +  +  ++++ + + G GIAL
Sbjct: 182 QDLSALNSLVFAYPGYNSAYWTLENTENSEVRRVPVKKAMSADDGMTLLHWALQGHGIAL 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + V+ +     L+ ++     P   +            ++  F NF+  
Sbjct: 242 RESWSVQKHLTNGELINLLPQWHEPISPIQIVRTGRNSVPIRISMFANFLIE 293


>gi|315126045|ref|YP_004068048.1| LysR transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315014559|gb|ADT67897.1| LysR transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 305

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 129/298 (43%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  +   GS T AA+QL L+++  S  +  LET++ + L  R  R +
Sbjct: 1   MKVSFEQLKSMVVFAQIVEQGSLTAAAKQLGLTRAVASYHLKKLETQLEVTLLNRSTRTM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   +     +  +      +++    +P G L+I+  +++G  L+   +  F  
Sbjct: 61  ALTEAGMAYYERCRVITEQANAANQQIENIKSEPQGLLKISCPVNVGMQLIVPAINTFKR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I I L L +  +DI     D AIR    ++ S+L   KL T+      AP Y  + 
Sbjct: 121 QYPKIDIDLQLTDDVVDIIKHGFDFAIR-GVALRDSNLQATKLTTMSTCICGAPDYFAHF 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +P +  EL KH  + +  L  K +     L    + +       L  N+  +   +   
Sbjct: 180 GKPTTPDELVKHQWVVY-QLGSKTLT----LQKEGKKVDITMQGSLSTNNAAARTAFVEA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G G+  +P Y          L  I++D  +    +Y  +P     + KL+ F +++  
Sbjct: 235 GHGLGRIPLYDAWPKVQAGLLQIILDDYKSKDIELYGVFPPGAAGSKKLRLFIDYLKA 292


>gi|170738116|ref|YP_001779376.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820304|gb|ACA94886.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 322

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 128/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +L+    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAELDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H  +          E     +  +  + E + +  QVN   ++      G G
Sbjct: 180 QTPDELPNHVCLRLDTPASPAGEWRLERSDGEEAVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|116053777|ref|YP_788212.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588998|gb|ABJ15013.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 306

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 128/288 (44%), Gaps = 8/288 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  V  SGS T AAE+L +S++ +SR ++ LE  VG +L +R  R L+LT+ G++L  
Sbjct: 8   RVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWVGARLLHRSTRRLSLTDAGAELLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    +  Q   Q     P G LRI +++   Q  L      F+  YP   I L +
Sbjct: 68  QCREMLAVADAMQATGQTRRDSPRGTLRITSSLSFAQAWLTRAAAAFVERYPGTAIDLQV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +++  +  D A+R+   +   +LI R+L        AAP YL+    P   ++L  
Sbjct: 128 NSQVVNLVEERIDLALRIANQL-DPNLIARRLGECRSVICAAPDYLRGHGTPRRPEDLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        +          P   P    L  N    +++    G+GI+  P Y 
Sbjct: 187 HNCLTYSYFGRSLWQ----FERDGEPTSVPVGGSLSANESTVLLEAAAAGAGISQQPLYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 +  LV ++ +       ++  Y    +    L+A  +F+  +
Sbjct: 243 AAPLIRSGRLVALLPEWSPQVLGIHAVYASRRQMPPALRALLDFLVER 290


>gi|325915261|ref|ZP_08177583.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538533|gb|EGD10207.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 306

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 126/295 (42%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V   GS T AA  L LS +  S+++  LE ++G++L +R  R L  T 
Sbjct: 1   MDRLGDIALFLRVLDLGSITAAAHTLDLSVAVASQRLKRLERDLGVRLLHRTTRRLHPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   LE    +L+ES+    G LR+  +   G+  +   L  F   +  
Sbjct: 61  EGQQLAERGRVLVDDLEALADDLRESAQDVGGTLRVTLSASFGRQYISPLLPAFQARHRR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I   L +  +D+     D AIR+   +  S L+ R++        A+P YL+    P 
Sbjct: 121 LRISAHLSDDVVDLVQQGFDLAIRIGA-LDDSGLVARRIADNRRTLAASPAYLQRHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           + QEL +H  +    +     +D   L T D      R+ S  + N    +    + G G
Sbjct: 180 TPQELMQHAGVLL--MGRDGRQDLWTLQTPDGGQVRVRMQSRFESNFGELVRDAVLAGQG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I +   + + D      LV +M D   P+  +    P       +++AF +F+  
Sbjct: 238 IGMHSYWHIADELRAGRLVEVMTDHPPPASNISAVMPARQLQPPRVRAFVDFLLE 292


>gi|307726249|ref|YP_003909462.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586774|gb|ADN60171.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 296

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 5/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D LR F  VA   SF  AA+ L +++S++S  + GLE  +  +L +R  R ++LTE G
Sbjct: 5   TLDDLRAFMAVAEHRSFRRAADLLGVTRSTLSHAMRGLEDNLSTRLLHRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    +   L+T   E+  +   P G LRI  +    + LLQ  + EFL  YP I+
Sbjct: 65  ESLLRRIGPLVGDLDTALEEVAGAQGNPRGTLRINGSEGAIRLLLQTVVPEFLARYPGIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+ + + +DI     D  +RL + +    +  R    +   A A+P YL +   P   
Sbjct: 125 LDLVAEGRLVDIVEQGFDAGVRLGEAVPRDMVAIRLGPDMRFLAVASPGYLVSHPAPTMP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H  I     +P             + +       L +++   I++  + G GIA 
Sbjct: 185 DALLQHQCI--RQRLPSGKRYRWEFLKRGQDMAIDVPGALTLDNTQLIVEAAIDGLGIAY 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +P+   +    +  LV ++ED       ++  +         L+AF + +   A
Sbjct: 243 VPEPYARAALSDGRLVAVLEDWCPLIPGLFLYFLGTRHMPTSLRAFIDMVRAAA 296


>gi|311106765|ref|YP_003979618.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761454|gb|ADP16903.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           112 [Achromobacter xylosoxidans A8]
          Length = 298

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + ++L ++  V  +GSFT AA+ L  +++ +S  I  LE E+G+ L  R  R L LTE 
Sbjct: 2   INLNRLAMYAAVVEAGSFTAAADALGTTKAVVSFNIKQLEQELGVALLTRSTRRLALTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +    ET   E +      SG LR+  ++D G  ++   L  +   +P +
Sbjct: 62  GEGFYGHCARLLRDAETAVDEARSGQAALSGSLRVTASVDYGNLVVAPALAAYAREHPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     +   D+  +  D AIR+   ++ SS    ++    +   A+P  L     P +
Sbjct: 122 RVSYRAGSAHADLIAERLDLAIRVGA-LEDSSYRATRIGQFRLWLVASPALLAQHGMPRT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q L     +      P   + +       R          Q ++  +++ + V G G+A
Sbjct: 181 PQALAALPWLA---NRPGRSDRWRLTDGKGREHELRVAPVAQADTASALLAFAVAGCGVA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LPD+++++      L R++     P   VY  YP+    + K++ F +F+  + 
Sbjct: 238 ALPDWLLQEPLARGVLQRVLPSYTLPRQEVYAVYPDTRHVSAKVRRFIDFLRARL 292


>gi|296159411|ref|ZP_06842236.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295890395|gb|EFG70188.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 298

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 8/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    + H +E  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGETFLQRARAILHAMEEAEESVTRGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  + + +D+     D AIR+ + +Q S+L  R L T  +   A+P YL    EP
Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRIGE-LQDSTLHARALGTSKLRVLASPAYLAEYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            S++ L +H LI F    P+ +  +             +I   +  +S  ++ Q  + G 
Sbjct: 180 RSVEALREHRLIGF--TAPEHLNRWPLREGRKGGAAALKIEPAITASSGETLRQLALSGW 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA L D++   +     LV I+ +V+      V   Y ++    G+++ F +FI  + R
Sbjct: 238 GIACLADFMSAADVREKRLVPILGNVLVDERQRVSAVYYQSASLAGRVQCFLDFIAARVR 297


>gi|91779559|ref|YP_554767.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692219|gb|ABE35417.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 312

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 5/296 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   D +  F  V  +GSF  AAE+++L++S++ + I  LE  +G++L  R  R  +LT
Sbjct: 1   MSDILDGVTTFVRVVETGSFALAAERMNLTRSAVGKVIVRLEKRLGVRLLNRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +        +LE  + +L     +P G+LR++     G + +   L      +P
Sbjct: 61  EDGQVYYDRCVRALAELEAAEADLDSGRREPKGRLRVSVPQAFGHHCVAPVLLGLARKHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D  +R+     S SL  RKL   H    AAP YL     P
Sbjct: 121 QLKIDISITDRFVDVVEEGFDFVVRVGPLADSVSLAARKLGVQHASIGAAPAYLARHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL  H +I +  L     + ++ +    +         L  +    I+   + G G
Sbjct: 181 RSVDELRGHAVIAY--LRAGSAQPWDVVDVDGQIRRAQVQPQLGFDDMQGIVDAALAGFG 238

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A LP +++        LV +ME+   PS  ++  +P++     K +   + +  +
Sbjct: 239 LAWLPSWLLARYAQTGELVTVMENCFRPSQEIHLVWPKSRYLPLKTRCAIDALVAQ 294


>gi|320641650|gb|EFX11038.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. G5101]
          Length = 314

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 14  LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 74  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 134 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 193 DLSALPCLVIKECDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 250

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 251 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298


>gi|237808260|ref|YP_002892700.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500521|gb|ACQ93114.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 297

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 136/293 (46%), Gaps = 7/293 (2%)

Query: 1   MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+  D + L  F VVAR  SFT AA QL +SQS++S  I  LE ++GI+L  R  RG++ 
Sbjct: 1   MNDIDLNNLLAFIVVARERSFTRAAAQLGVSQSALSHTIRRLEEKMGIRLLTRTTRGVST 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L+      Y  ++T    L   + KP+G +RI+T       +L   L + L LY
Sbjct: 61  TEAGERLYINLGPHYEGIQTELSALYALNDKPAGTIRISTHDRPADTILWPKLSKLLPLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ I++ ++ + IDI  +  D  +RL   +    +  R    + M    AP Y KN   
Sbjct: 121 PELNIEISINYELIDIVAERFDAGVRLGDQVAKDMIAVRISPDVRMAVVGAPSYFKNRVI 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P + QEL   N I     +P     + W       I   ++   +  N  + I+   + G
Sbjct: 181 PQTPQELTGQNCIRL--RLPTHGGIYAWEFEKGGQILHVQVQGQMIFNQSVHILNAALQG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            GIA LP+  +K   D   L++++E         +  +P   +++       +
Sbjct: 239 YGIAYLPEEQIKPYVDQGQLIQLLEPWCPTFPGYHLYFPSRRQSSPAFSLVVD 291


>gi|190893179|ref|YP_001979721.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190698458|gb|ACE92543.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 302

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 131/294 (44%), Gaps = 10/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D + VF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFDAMGVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +E  +     +  +P G LR+     L ++ +  +L  FL  YP+
Sbjct: 61  DGEAYYQRCLSILADIEDAEGAFAGA--RPKGLLRVDVHGTLARHFVLPSLPSFLETYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+  +   ++ +D+  +  DC +R+  P   S ++ R+L  +     A+P Y+     P 
Sbjct: 119 IEFYMSEGDRLVDLVREGIDCVVRVGTPG-DSDMVARRLAMLDEITLASPAYIAAHGLPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               L  H ++ F       +    ++     R I  P  + + VN+  S +    +G G
Sbjct: 178 HPDRLTGHRMVGFRSSSTGTLLPLEFIVDGAVRNITLP--AAVAVNAAESYISAARMGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +P Y  +++     LV ++E+       V   YP   + + +++ F +++ 
Sbjct: 236 LIQIPRYHAENDLAEGRLVHVLENFPLTPTPVSLLYPRNRQLSPRVRVFIDWLV 289


>gi|187923419|ref|YP_001895061.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714613|gb|ACD15837.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 309

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 128/298 (42%), Gaps = 13/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V  +G+F+ AA QL  + S++SRQI  LE  +  +L  R  R + +TE G+++
Sbjct: 12  DMAVFARVVDAGNFSVAARQLGSTPSTVSRQIKRLEDALATRLLERSTRTVRVTESGAQV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   ++            + + +P GK+ ++      ++++   +  FL  Y ++ +QL
Sbjct: 72  VRFCRDMVSAASGAVDAAGQLAGRPQGKVSVSAPTQFARSVIHPLIAGFLRAYDEVDLQL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  + D+D   D  D  IRL +      L  R+L  +     A+P YL+    P   ++L
Sbjct: 132 LFTDHDVDPLADDVDLVIRLTEH-PPQGLAGRRLGAVRWLLVASPAYLRERGTPAQPRDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            KH  I  G+      +D  W            +      N   + ++  +   G+A +P
Sbjct: 191 HKHACIYLGETA----DDNRWRFRRGTETQSVDVKGRYIANHAGARLEAALQDFGVACVP 246

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++   D   +  LV+++ D    +       +  YP       K++A  +++     D
Sbjct: 247 EFAAADSLQSGALVQVLPDWNLEARAYVGSVWLLYPPNRFLPPKVRALIDYLVEHLHD 304


>gi|330808859|ref|YP_004353321.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376967|gb|AEA68317.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 134/287 (46%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT AA  L LSQS++S  +S LE  +G +L  R++R ++ TE G +L 
Sbjct: 13  LMAFIAVAREKSFTRAAAHLGLSQSAVSHAVSSLERNLGTRLLARNSRSVSPTEAGERLL 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 + +++   + L E    P+G +RI  +    ++++   LK+FL  YP I+++L 
Sbjct: 73  ATVGPRFEEIDAELLALSELGESPTGTVRITASDHAIRSIISPKLKKFLPKYPGIKVELF 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            DN  IDI+ D  D  +RL + I    +  R    +   A A   Y  +  EP + ++L 
Sbjct: 133 ADNGLIDIAADRFDAGVRLGEAIAQDMIAVRIGPDMRFTAVATRRYFASSPEPETPEDLM 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +HN I     +P     + W    D      R+   L  NS    +   + G GIA +P+
Sbjct: 193 QHNCINL--RLPTHGGLWPWEFGEDGRQLNMRVDGQLIYNSIYDCLDAAIAGLGIAYVPE 250

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            I +      +L+ +++D       ++  YP   + +G +      +
Sbjct: 251 DIAEPYVKAGHLIPVLKDWCPLWTGLHLYYPSRRQPSGAMALLIAAL 297


>gi|300950381|ref|ZP_07164307.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300450282|gb|EFK13902.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
          Length = 309

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 129/287 (44%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++++++   G+GIA +
Sbjct: 183 DLSSHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P  +V +      L  ++    +    VY  Y E  K   K++   N
Sbjct: 240 PLMLVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 286


>gi|167578109|ref|ZP_02370983.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 305

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 128/297 (43%), Gaps = 4/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V ++GSFT AA  L + ++++SR++  LE ++G++L +R  R L LT
Sbjct: 1   MAADPNDTLIFVRVVQAGSFTAAARLLRMPKTTVSRRVMTLEAQLGVQLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS  +     +  +L+     + +    P G LR+      G   +   L  F   YP
Sbjct: 61  EAGSLYYSHCRNMAAQLDEAHAAVSQLQSGPRGWLRVTLPYSFGTTWIAPLLAGFRQAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++++++  +  +D+  D  D A+RL   +  S L+ R+L +     YA+P YL     P
Sbjct: 121 DVRLEILASHVPLDLVADEIDIALRLG-VLADSDLVARRLGSFATGVYASPSYLMRHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  +T           +       R         +  +    I      G G
Sbjct: 180 EHPGELGAHRALTLHQARRAVGYAWPLRKPGGRAQYFALDPVIVASDPALIHDALCAGEG 239

Query: 241 IAL-LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + L +   +  D     + R++ D   P+      +P     + K++AF +++  + 
Sbjct: 240 LTLAMHQSMAADLEAGRVRRVLSDWSGPAQDFNALFPRGRVASPKVRAFVDYLRDRL 296


>gi|307128805|ref|YP_003880821.1| transcription regulator [Dickeya dadantii 3937]
 gi|306526334|gb|ADM96264.1| Transcription regulator [Dickeya dadantii 3937]
          Length = 296

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 132/287 (45%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  SGSF+ A+ +L + Q +IS+ I  LE ++ +KL  R  RGLT TE G + +
Sbjct: 7   LETFICVYESGSFSAASRRLGIGQPAISKAIMQLEQQLAVKLLLRSTRGLTPTEAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +    +L   Q  ++  + + SG LR++  +   +  +   L  F+  +P +++ +I
Sbjct: 67  EQVAPALQQLHEAQDGVRGGNGELSGYLRVSAPVTFARLHVLPRLHVFMSQHPQLKVDII 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  +  D A+RL + ++ S L  RK+ +  M   A P Y      P S + L+
Sbjct: 127 LDDRPVDLIAEGIDVALRLGE-MKDSGLTARKIGSAPMRLLATPAYFAARGTPASPEALE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + +     +     NWL    DR         ++ ++   + +  + G+G+ +   
Sbjct: 186 DHDAVIY----LQTDAPGNWLFCRDDRQCRVTMSGRIRTSAAEGVREAVLAGNGLTVASA 241

Query: 247 YIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++         +   + D       ++  YP     + + +AF  F+
Sbjct: 242 WMFAPELASGAVTTALADWHIGVMDLWAVYPGGRLTSARARAFTEFV 288


>gi|170765782|ref|ZP_02900593.1| transcriptional regulator, trunscation [Escherichia albertii
           TW07627]
 gi|170124928|gb|EDS93859.1| transcriptional regulator, trunscation [Escherichia albertii
           TW07627]
          Length = 310

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +   GSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHCGSFSAAAAALGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSYIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+    P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPLPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V+    +  LVR++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVQPFLASGKLVRVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|149919115|ref|ZP_01907599.1| putative LysR family transcriptional regulator [Plesiocystis
           pacifica SIR-1]
 gi|149820045|gb|EDM79466.1| putative LysR family transcriptional regulator [Plesiocystis
           pacifica SIR-1]
          Length = 304

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 135/293 (46%), Gaps = 5/293 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++ +F  VA +G+F      L L+ S+ S+ +  LE+ +G KL YR  R ++LT++G 
Sbjct: 7   LNEILIFMAVADAGTFVGGGRALGLTGSAASKAVLRLESRLGAKLLYRTTRAVSLTDEGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   +E  +  +     +P G LR+      G+ +L   ++ +L  +P +++
Sbjct: 67  AFYKGGVRIVEAIEAAESSVGGDVGEPRGTLRLTVPDAFGRRVLMPLVRGYLERWPSVRV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D+  +  D AIR+     S  LI R +    +   A+  YL     P ++ 
Sbjct: 127 EISFTDRPVDLVEEGFDLAIRIGGASASEGLISRVVARYEVFMCASQAYLDAEGTPRTLG 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL+ H  I F              A  +R    PR S + ++S  +I    + G GI  L
Sbjct: 187 ELEAHEGIVFRSGTTSQAWTLT-SADGERARHRPR-SRVALDSGEAIRDATLAGLGIGYL 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P+++V ++     LVR++ ++      +   YP       +++ F + +  + 
Sbjct: 245 PEFLVGEDLGAGRLVRLLPEIDAGVAQIVALYPSKRMLEPRVRQFIDLVIAQL 297


>gi|239993069|ref|ZP_04713593.1| transcriptional regulator, LysR family protein [Alteromonas
           macleodii ATCC 27126]
          Length = 303

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L +F  V   GSF  AA +L  S+S +S Q++GLE  + ++L  R  R L LT++G+
Sbjct: 9   LKALAIFASVVECGSFAEAARRLGTSRSRVSEQVAGLEASLDVRLLQRTTRQLMLTDEGN 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +     + +  L     +L++    P G++ I  T D+    L   L EF   YP+I +
Sbjct: 69  AVFSHAKKCHEILHGIDEDLRQ--PAPKGRVSITVTNDIAHKFLLPLLPEFKRRYPEIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++  +  +D+     D  +R+  P +  SL+ R L       YA+P YLK   EP +I 
Sbjct: 127 HIVSSDDKLDLIAQNIDVGLRIGLP-RDDSLVGRVLYQEQFALYASPDYLKKYGEPKTIA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI-AL 243
           EL+ H  I    L  + M   ++L   + PI          NS   + +    G GI  L
Sbjct: 186 ELNNHTWILLSQLNSRIM---HYLMLDNTPIDITPKHYELCNSPHLVQEMVKAGLGISTL 242

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP  + K+  +  LVRI   + + +      YP       + +A  +++    R
Sbjct: 243 LPSTVQKEVASNELVRIFPSLGSETLLFTLVYPSRKHVPSRTRALIDYLVETCR 296


>gi|213969571|ref|ZP_03397707.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301383346|ref|ZP_07231764.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059382|ref|ZP_07250923.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134511|ref|ZP_07260501.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213925667|gb|EEB59226.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 302

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 9/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA +GSFT AAE+L L+ S++S+ +S LE+ +G++LF R  R L LTE+G 
Sbjct: 7   LKGIETFVAVASAGSFTAAAERLSLTNSAVSKSVSRLESRLGMRLFERTTRSLALTEEGV 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H V + +  +LE  +  L     +P+G+LRI      G+  +   + +F   +  ++ 
Sbjct: 67  AYHAVCTRMLAELEAAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILDFAGQHHKLRP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   ++ +DI  +  D A+R+  P+   + +  R L T  +   AAP YL+    P + 
Sbjct: 127 RVTFTDRFVDIIEEGIDLAVRIGGPLIWPAGVAHRYLGTERVIFCAAPAYLQRHGTPTTF 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           ++L +H  I FG           WL   ++   E R   + L + +  + +       GI
Sbjct: 187 EDLARHACILFG---RGDGSTSPWLFVDEQGQQEARAIEARLVIGNGEAQVAAVTSAWGI 243

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L  +++KD      LV I+  + T    ++  +P   ++  K++A    +
Sbjct: 244 AQLATWLIKDQLQRGELVEILPQLATEGLALHLAWPRNRESLPKVQALVERL 295


>gi|153802938|ref|ZP_01957524.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|124121506|gb|EAY40249.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
          Length = 313

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G 
Sbjct: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ +
Sbjct: 64  IFLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L ++  D+  +  D AIR  +P   S+L+   L         A+P YL      L  
Sbjct: 124 KLDLSDRLTDMYANPVDIAIRYGQP-ADSNLVAMLLCDSNERVLCASPEYLAAHPPILHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + F  ++   + +   L+                N    + +  V G GIA 
Sbjct: 183 DDLQHHNCLCF--MLADTLHNKWILSRNGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +     +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K
Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREK 293


>gi|86147816|ref|ZP_01066123.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85834454|gb|EAQ52605.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 294

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 133/301 (44%), Gaps = 15/301 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +  F  VA    F+ AA+QL  S S +SRQ+S LE  VG+ L  R  R ++LTE
Sbjct: 1   MDSFEGINEFVAVAECHGFSAAAKQLGCSTSHVSRQVSRLEERVGVALLARSTRMVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   ++   L+    ++     + SG LR++      +N     L EF   +PD
Sbjct: 61  SGHTYYQQCKDLVIGLQQANEQVTSQQAQLSGTLRVSAAGAFAENHAAAALMEFAKDHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  +   ++   D  D AIR  + +  S L+ RKLV   M A A+ +Y+     P 
Sbjct: 121 LTIEMNFNTNMVNFIEDGIDFAIRYGR-LDDSGLVARKLVDRPMAAAASQNYIDQFGSPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
             ++L  H+ I              WL   D +P+   R+    + N+  ++++ C  G 
Sbjct: 180 QPEQLKWHSCIIANSD--------QWLFEKDGKPLNAVRVHGRWKSNNSSAVLKACEGGL 231

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI  LP    K    N  LV ++E+      + +  Y        + +   +F+     D
Sbjct: 232 GIVYLPKSSFKGGLANGKLVPVLEEYWGAGTSSWIVYQNRRFLPQRARLAIDFLVSYFSD 291

Query: 297 W 297
           W
Sbjct: 292 W 292


>gi|15597416|ref|NP_250910.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|12230968|sp|Q01610|OPRR_PSEAE RecName: Full=Putative transcriptional regulator
 gi|9948244|gb|AAG05608.1|AE004648_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 306

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 128/290 (44%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR G+FT AA QL ++QS++S+ ISGLE  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLSFVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E    EL     KPSG +RI     + + LL   L   LL YPDI+
Sbjct: 65  ERLLNAIGNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  ++    DI  D  D  +RL   I    +       + M   AAP Y     +P S 
Sbjct: 125 VEFDINYGFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  HN I         +  ++     DR +       L  N+  +I+   + G GIA 
Sbjct: 185 RDLVDHNCINMRMQSGGGLYAWD-FQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIAW 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+       +   L+R++E+        Y  YP   + +       + +
Sbjct: 244 LPEEEFAPHIEEGRLLRVLENWCPLFPGYYLYYPNRRQPSPAFSLVVDAL 293


>gi|83950473|ref|ZP_00959206.1| hypothetical protein ISM_05225 [Roseovarius nubinhibens ISM]
 gi|83838372|gb|EAP77668.1| hypothetical protein ISM_05225 [Roseovarius nubinhibens ISM]
          Length = 301

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LR+F   A   + + A   L L+ +  S +++ LE  +G +L +R  R ++L+ +
Sbjct: 1   MDTDALRLFVRAADLLNISAAGRDLGLAPAVASARLAKLEAALGAELLHRTTRKVSLSLE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+       E+  + E  +  L    ++ +G LR A      Q  +   L EFL  YP +
Sbjct: 61  GADFLPFAREILAQEEAARAALGSGGLQAAGTLRFAAPSSFAQLYIVPLLPEFLDQYPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L +   D      D A+R   P+Q SSL  RKL        AAP Y+     P +
Sbjct: 121 RLDLRLSDSPFDAIEGSFDLALR-NSPLQDSSLKGRKLAEDRRILCAAPSYIATHGAPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H LI F D  P+ +   +   +   P        + ++  LS     V G+GI+
Sbjct: 180 PEDLADHRLIAFRDQGPRPLLHKDGGQSSYHPALSK--GQVIIDDGLSQKLLTVQGAGIS 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK 293
           L   + V     +  L R++ D        ++  YP +   + K++ F +F+  K
Sbjct: 238 LNSLWSVHAELGSGALTRVLPDYELDDQAKLWLVYPSSHVLSPKVRVFMDFLIGK 292


>gi|290510966|ref|ZP_06550335.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289775959|gb|EFD83958.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 305

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 133/298 (44%), Gaps = 5/298 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  SG+F  AA  LH+++S++ + I+ LE  +G+ LF R  R   LT
Sbjct: 1   MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G + +    E   ++   +  LQ    +  G+LRI+  +  GQ  +   L      YP
Sbjct: 61  EEGEQFYHQCREALARIREAEEALQRGKGEVQGRLRISLPVLFGQRCVAPVLFRLSQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +++  +  D A+R+     + SL  R L    M   AA  YL+    P
Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGNLADTGSLRARALGEHGMVLCAAVEYLRRQPPP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I  L +H  + +  L    ++ +         +     + L  + + +I    + G G
Sbjct: 181 QTIAGLSEHRTLGY--LHNGQLQKWQLYDPQQGEVRFSPQTGLVQDDFAAIAAAVLQGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA LPD++V     +  L +++       F ++  +PE      K +   + +    R
Sbjct: 239 IAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEGPWLPQKTRVTIDALREGLR 296


>gi|15802212|ref|NP_288235.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 EDL933]
 gi|82543798|ref|YP_407745.1| transcriptional regulator LYSR-type [Shigella boydii Sb227]
 gi|168749371|ref|ZP_02774393.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168758108|ref|ZP_02783115.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168764256|ref|ZP_02789263.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168770771|ref|ZP_02795778.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168774886|ref|ZP_02799893.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168782230|ref|ZP_02807237.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|191168833|ref|ZP_03030607.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|195937487|ref|ZP_03082869.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EC4024]
 gi|208816738|ref|ZP_03257858.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208818719|ref|ZP_03259039.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|256018013|ref|ZP_05431878.1| putative transcriptional regulator LYSR-type [Shigella sp. D9]
 gi|261227705|ref|ZP_05941986.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258130|ref|ZP_05950663.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282979|ref|YP_003499797.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|293446171|ref|ZP_06662593.1| HTH-type transcriptional regulator yeaT [Escherichia coli B088]
 gi|331653203|ref|ZP_08354208.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
 gi|331673335|ref|ZP_08374103.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
 gi|331677675|ref|ZP_08378350.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332279050|ref|ZP_08391463.1| conserved hypothetical protein [Shigella sp. D9]
 gi|12515836|gb|AAG56788.1|AE005402_14 putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EDL933]
 gi|13361975|dbj|BAB35931.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. Sakai]
 gi|81245209|gb|ABB65917.1| putative transcriptional regulator LYSR-type [Shigella boydii
           Sb227]
 gi|187769471|gb|EDU33315.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188016319|gb|EDU54441.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|189000344|gb|EDU69330.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189355034|gb|EDU73453.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189360394|gb|EDU78813.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189365706|gb|EDU84122.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|190901113|gb|EDV60888.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|208731081|gb|EDZ79770.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208738842|gb|EDZ86524.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209768078|gb|ACI82351.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209768080|gb|ACI82352.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209768082|gb|ACI82353.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209768084|gb|ACI82354.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209768086|gb|ACI82355.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|290762852|gb|ADD56813.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323001|gb|EFE62429.1| HTH-type transcriptional regulator yeaT [Escherichia coli B088]
 gi|320183822|gb|EFW58655.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Shigella flexneri CDC 796-83]
 gi|320647010|gb|EFX15843.1| LysR family transcriptional regulator [Escherichia coli O157:H-
           str. 493-89]
 gi|320652292|gb|EFX20590.1| LysR family transcriptional regulator [Escherichia coli O157:H-
           str. H 2687]
 gi|320657893|gb|EFX25655.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658466|gb|EFX26160.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668364|gb|EFX35191.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. LSU-61]
 gi|331049301|gb|EGI21373.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M718]
 gi|331069533|gb|EGI40920.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
 gi|331074135|gb|EGI45455.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332101402|gb|EGJ04748.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 314

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 14  LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 74  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 134 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 193 DLSALPCLVIKERDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 250

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 251 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298


>gi|296156371|ref|ZP_06839209.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295892970|gb|EFG72750.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 307

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 127/296 (42%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L  F  +A   SF+ AA  L +S S++S  + GLE  + ++LF R  R + LTE G 
Sbjct: 6   LSELTAFIAIAHQRSFSAAARTLGVSPSALSHAMRGLEARLDVRLFNRTTRSVALTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R        LE    E   +  +PSG +R++ +    + L+Q  L  FL  YPDI +
Sbjct: 66  QLLRRVGPAIADLEDAVNEAASARNRPSGSIRVSASESAARPLVQHVLPGFLATYPDIHV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + ++D + +DI  +  D  IR+ + +    +  R    +   A A+P Y+    +P +  
Sbjct: 126 EFVVDTRLVDIVAEGFDAGIRVLQDVPRDMIATRFGPDMRFIAVASPDYVARHGKPEAPH 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I F             L    +         + + +   +++  + G GIA +
Sbjct: 186 DLAQHRCIRFRFESGALYRWD--LEYRGKSASVDVDGPMTLGNLNLMVEAALAGIGIAWV 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            D +  +   +  LV+++ +       +   YP        L+ F        R+W
Sbjct: 244 SDQLAAEYLASGRLVQLLAEWSPSFPGLCLYYPANRHPPTALRLF----AQAVREW 295


>gi|212637277|ref|YP_002313802.1| Substrate-binding transcriptional regulator, LysR family
           [Shewanella piezotolerans WP3]
 gi|212558761|gb|ACJ31215.1| Substrate-binding transcriptional regulator, LysR family
           [Shewanella piezotolerans WP3]
          Length = 299

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 9/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F V+A  GSFT AAE+L  S+S +S+Q++ LET +G+ L  R  R   LT+
Sbjct: 4   DLNLADVRAFTVIAEQGSFTLAAEKLGCSRSHLSKQLTQLETYLGVTLITRTTRAQRLTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
           QG   +         +E    +  +++    G + I      +G+ ++   + +F+  +P
Sbjct: 64  QGEFFYERCQHALDVMEQAVAKTVDNAQNLQGNININCVGGYIGEEIVTRLVNDFISAHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I I L   ++ +D+ +D+ D   R+ + ++ S L+ RKL+ I     AAP YL+    P
Sbjct: 124 NISINLDFSSQRVDLVLDHFDLVFRMGE-LEDSGLVARKLMDITNCTLAAPTYLEQKGIP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              + L +H+ I    +       F   A   +          +  +   +    + G G
Sbjct: 183 SHPKALHEHSCI----IGSINHWSFQHKADAQQKAEVAITGKFRCKNGRVMKSSALAGHG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  LP+    D      LV + +  + P+  +Y  Y +      +L+ F  F
Sbjct: 239 IVRLPELYCADELRRGELVHVFDQWLIPATPLYLLYSKDKFQPARLREFIAF 290


>gi|94313187|ref|YP_586396.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93357039|gb|ABF11127.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
 gi|222832804|gb|EEE71281.1| predicted protein [Populus trichocarpa]
          Length = 303

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 122/298 (40%), Gaps = 7/298 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D + L  F      G F  A   L + +S +SR+I+ LE  +G++L  R  R   +
Sbjct: 1   MPMQDLNDLYYFAQSVEHGGFAPAGRALGMPKSKLSRRIAMLEERLGVRLIQRSTRQFAV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G   +     +  + E  Q  ++    +P G LR+   + L Q  +   L EF+  +
Sbjct: 61  TEIGRVYYEHCKAMLMQAEAAQEAIEVIQAEPRGTLRMTCPVALLQVHVGTILSEFMARH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P + + L   N+ +D   +  D AIR+R  P+Q S L+ R L        A+P   +   
Sbjct: 121 PLLTVHLEATNRRVDPVAEAIDLAIRVRPPPLQDSDLVIRVLAERSQCLVASPALAQAHG 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P +  EL     +  G   P+    ++                L     +++    V G
Sbjct: 181 MPPAPAELSDWPSLAIG--TPQQDHTWHLYGPDGVQATIHHRPRLVTGDMIALRNAAVAG 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+  LP  +V+D   + +LVR++ D       ++  +P        ++   +++  +
Sbjct: 239 VGVCQLPVMMVRDQLTDGSLVRLLPDWAPRREILHAVFPSRRGLLPGVRLLIDYLAER 296


>gi|323139326|ref|ZP_08074378.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC
           49242]
 gi|322395392|gb|EFX97941.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC
           49242]
          Length = 295

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 136/293 (46%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    +L VF  V   G F+ AA  ++LSQ S+SR +  LET +G+KL  R  R L LT
Sbjct: 1   MSDRLQELAVFIRVGERGGFSRAARDMNLSQPSVSRIVGELETRLGVKLLLRSTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +      E+   LE  +   +       G +R+A  +  G   +   LKEFL  +P
Sbjct: 61  PAGEQFLARAREILADLENAEDAAR-GVDSLRGTIRLAVPVIYGMRRIIPRLKEFLDRHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L + +   D+  +  D A+R+ K ++ S    RKL T+     AAP YL+    P
Sbjct: 120 QLRMELRVSDAHQDLVAEGVDIAVRVGK-LRDSPFGARKLATLQRLLAAAPSYLETRGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +H+ I   + +      F    TV   +       + V+S   ++   + G G
Sbjct: 179 RTPADLAQHDCIFGPNSLGLETWIFRRRDTV---VSVEVAGRIHVDSGPGVLASAISGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA++P  + ++   +  LV ++ +       V+  +P     + K++A   ++
Sbjct: 236 IAVVPSAMGEEEIRSGALVPLLTNYTLEPVDVHAIFPGGPHPSPKVRALTEYL 288


>gi|227820970|ref|YP_002824940.1| putative transcriptional regulator protein, LysR family
           [Sinorhizobium fredii NGR234]
 gi|227339969|gb|ACP24187.1| putative transcriptional regulator protein, LysR family
           [Sinorhizobium fredii NGR234]
          Length = 298

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 11/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L VF  V  +GS + A   L LS + IS+++  LE  +G +L  R  R ++LTE G
Sbjct: 3   NLGDLEVFARVVSTGSMSAAGRALGLSAAVISKRVKRLEERLGTRLLQRTTRQVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     V   +E  +      S +  G LRI      G+  +  +L  F+  +PD++
Sbjct: 63  QGFYDRVLGVLAGIEEAEAYAAGRSSQAQGTLRITAPTSFGRMHIAPHLTGFMKDHPDLK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++L ++  DI  D  D A+R+ + +  SSL+ RKL  +     A+P Y+     P  I
Sbjct: 123 LHIVLSDEFSDIVADGFDLAVRIGE-LTDSSLVARKLAPVRRLLCASPDYISRHGAPKEI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +      P    +   L      +       L  NS   I    + G+GIAL
Sbjct: 182 GDLAEHICL------PAHNNESWKLEGPGGSLAYRPDGPLVTNSSEIIRAAVIAGAGIAL 235

Query: 244 LPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V     + +LV+++ +   +   T+   YP       K++ F +++
Sbjct: 236 RSTWDVSAELRDGHLVQVLPEWEGSQRLTLSAVYPSRQFLPAKVRLFVDYL 286


>gi|194430021|ref|ZP_03062528.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|194411948|gb|EDX28263.1| transcriptional regulator, LysR family [Escherichia coli B171]
          Length = 314

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 14  LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 74  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 134 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 193 DLSALPCLVIKERDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 250

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 251 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298


>gi|260432179|ref|ZP_05786150.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416007|gb|EEX09266.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 295

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 130/298 (43%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  WD L  F +V  +G FT AA +L +S S +SRQ++ LE  +G+KL  R  R + LT
Sbjct: 1   MAL-WDGLEEFLMVVETGGFTAAARRLGVSASHVSRQVARLEDRLGVKLLARSTRVVRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   H   + +   LE           + +G++R++      +  +   L  F  L+P
Sbjct: 60  DAGRDYHARVAGLVAGLEEANQSAAGDRAQIAGRIRVSAAGPFAEQFVAPALARFASLHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +  +++ ++++ +  D AIR    +  S LI R+L T  M   AA  YL     P
Sbjct: 120 KLSVTIDFNSRLLNLTEEGFDFAIRYG-TLTESGLIARRLATRRMVCVAARGYLDRHGRP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  +   +   +  +  +       PI        Q N+  +I+     G G
Sbjct: 179 THPADLRQHQCLITNNDRWEFRDPGS-----GDPIEVRVHGRWQANNPHAILSAARQGLG 233

Query: 241 IALLPDYI--VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   P+     K  P L  I++    PS   +  YPE      +++   +F+  +  D
Sbjct: 234 VMYAPEIFLGAKRPPELEPILQGFEDPSRASWIVYPERRHLPLRVRRAMDFLVEELGD 291


>gi|296531779|ref|ZP_06894599.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296267889|gb|EFH13696.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 298

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 124/294 (42%), Gaps = 6/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L VF VVA + SF  AA++L +++S++S+ +  LET++GI L  R  R ++LT
Sbjct: 1   MHLDLNALTVFAVVAETRSFRAAADRLGVTRSAVSQTMRKLETQLGIALLQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++     +    ++             PSG LR+A +      L    L  FL  +P
Sbjct: 61  EAGARFQAGIAGALAEIGQAAEAAAALRGHPSGLLRLAVSSIAESFLSGPQLGAFLEAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ + + + + DI  +  D  +RL + I    +           A AAP YL     P
Sbjct: 121 GIRLDVTVTDAEFDIVAEGFDAGVRLGEVIAQDMIAVPVSAPQRQLAVAAPSYLARHGRP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
              +EL  H  I +       +  + W    D    +  ++  +  N    +++    G 
Sbjct: 181 AHPRELPAHRCIGWRPA--PELPPYRWEFGADGAEFDVEVAPHVTTNDMALMIRLACAGH 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI    +   +       LV ++ED   P    +  +P       KL+A  + +
Sbjct: 239 GITFGMEESFRPWIGRGELVPLLEDYCPPFPGFFLYFPSRRHLAPKLRALIDHL 292


>gi|293412437|ref|ZP_06655160.1| transcriptional activator TtdR [Escherichia coli B354]
 gi|291469208|gb|EFF11699.1| transcriptional activator TtdR [Escherichia coli B354]
          Length = 310

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R A G+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSAHGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LVR++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVRVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|237811197|ref|YP_002895648.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|237505379|gb|ACQ97697.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 349

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 36  FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 95

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E       P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 96  AFYERCVRILEDIADAEREATHG-ATPQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 154

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 155 DIVLSDSLVDPLDERSDIAIRSGA-LDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 213

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+HN I                   +     P    L +    SI +  V G G+A L
Sbjct: 214 DLDRHNCIGLSGNAKAWP-----FVAEEGQRLLPSAGNLLLGDNESIREAAVSGLGLARL 268

Query: 245 PDYIVK---DNPNLVRIMEDVIT-PSFTVYFCY--PEALKNTGKLKAFRNFIFLKAR 295
             + V    D   LV ++E         +   +  P       ++ A  +F+  + R
Sbjct: 269 ARFHVDADLDAGRLVPVLEVFNPGDEEEINAVFVGPSE-HLPMRVHALLDFLKERIR 324


>gi|241205513|ref|YP_002976609.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859403|gb|ACS57070.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 300

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V     F+ AA    ++ S++S+ ++ LET +G++L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERCGFSAAATARRMTPSAVSKLVARLETRLGVRLVNRSTRKLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +   +   + +   +  + SG++RI T+   G ++L   +  F+ L+P + + +
Sbjct: 71  YERSITILADIAEAERQ-ASTGEQASGRIRINTSGSFGNHVLAPLVPAFMALHPAVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  + AD AIR   P+++SSLI RKL        AAP YL    +PL+I +L
Sbjct: 130 SHTDRIVDLMEERADVAIRAG-PLKNSSLIARKLGATGKIIVAAPDYLSRHGKPLTIADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I F     + +E ++ L      +  P    LQV    ++    + G+G+A L  
Sbjct: 189 RRHCRIGFS--YARAIEGWS-LREGGETVMIPITPGLQVGDGEAMRHLALSGAGLARLAA 245

Query: 247 YIVK---DNPNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V+   D   LV ++E+         Y  Y  +      +++A  +F+    R
Sbjct: 246 FTVRADIDAGRLVPVLEEANPDDLEEFYAVYMGQGGPLPARVRALLDFLASHVR 299


>gi|88858347|ref|ZP_01132989.1| Transcriptional regulator [Pseudoalteromonas tunicata D2]
 gi|88819964|gb|EAR29777.1| Transcriptional regulator [Pseudoalteromonas tunicata D2]
          Length = 304

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 143/293 (48%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  ++L++F  V  SG+FT AA  L+  +S++S  I  LE ++G  LF+R  R ++ T+
Sbjct: 1   MDRIEQLKIFIQVVDSGNFTKAALVLNKPRSTVSTVIQELENKLGTSLFHRTTRSMSPTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +   +   +  + +  +     + VK  G++R+     + + ++   L +FL+ YPD
Sbjct: 61  DGLQYFELARSLVDQFDAAETLFLNNPVKVKGRIRVDIPSRIARRIVIPALPDFLIQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+    +K  D+  D  DC +R+  P+  S LI +KL  + +   A+P+YL     P+
Sbjct: 121 LEIEFGASDKYTDLVSDGVDCVLRVG-PLTDSELICKKLGDLSLCNCASPNYLVLNGTPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
            + +L KH ++ +   +        W   VD  I +  +   + V +  + +   + G G
Sbjct: 180 ELADLQKHKVVNYCSSV--AASSAGWEYCVDGEIRKIIMGSNIAVYNAEAYIAAALAGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +P + V D   +  L+ +M D       +   YP     T ++K F++++
Sbjct: 238 IIQVPRFDVVDLIESGALIEVMSDYRPLPLQLSLLYPSRKNLTPRVKIFQDWL 290


>gi|229515331|ref|ZP_04404791.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
 gi|229348036|gb|EEO12995.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
          Length = 296

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  V   GSFT AAE L +++S +S QI+ LE  V ++L  R  R ++LT
Sbjct: 1   MLNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTVNVRLLNRTTRKISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ +  + +  E     +   + + SG +RI TTID+G  LL   L EF   YP
Sbjct: 61  TEGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLSEFYKQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   + LD+   D+     D  IR+ + + SSSL+ R +    +  YA+  YL+N    
Sbjct: 121 KVNFDIQLDDGLQDLVDSNLDMVIRIGE-LTSSSLVGRVIAPFELGIYASQTYLENAPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +IQ+L++H+ + +   +    +                 S    NS L +M     G G
Sbjct: 180 NTIQDLEQHDWV-YLTRLNLPNQTLTLTNQEGVQHQVKFHSKHSSNSPLGVMTMVQNGLG 238

Query: 241 IALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +  +++    + +LVR+  D    S T+   YP       +++ F +++ 
Sbjct: 239 VGSIASFLIDKLPDASLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDYLV 291


>gi|169795723|ref|YP_001713516.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|184158374|ref|YP_001846713.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|260554785|ref|ZP_05827006.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|301348273|ref|ZP_07229014.1| transcriptional regulator [Acinetobacter baumannii AB056]
 gi|301512453|ref|ZP_07237690.1| transcriptional regulator [Acinetobacter baumannii AB058]
 gi|301594589|ref|ZP_07239597.1| transcriptional regulator [Acinetobacter baumannii AB059]
 gi|332873866|ref|ZP_08441806.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|169148650|emb|CAM86516.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|183209968|gb|ACC57366.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|260411327|gb|EEX04624.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|322508700|gb|ADX04154.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323518307|gb|ADX92688.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332737852|gb|EGJ68739.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 300

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
             S  EL  H +++  +   + ++    L   D  + + ++S  +   +   + Q     
Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYMLAQLASQN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIALLPD   +D   +  LV+I+ D        +  YP        ++ F +++  
Sbjct: 238 CGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYPSRRGLLPAVRVFIDYLVE 294


>gi|161618332|ref|YP_001592219.1| LysR family transcriptional regulator [Brucella canis ATCC 23365]
 gi|254703714|ref|ZP_05165542.1| LysR family transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|161335143|gb|ABX61448.1| transcriptional regulator, LysR family [Brucella canis ATCC 23365]
          Length = 304

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 134/300 (44%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S + +S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVVSNRIKELEKHLGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 60  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 120 DIEVRLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S + L  D+H+ +      P   E +  L T +             +    + Q+ + G
Sbjct: 179 QSPEALLSDRHHCLLL--RFPGSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P + VK+   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 237 RGIINKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 296


>gi|254253984|ref|ZP_04947301.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124898629|gb|EAY70472.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 315

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 124/298 (41%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFARVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++   +E  + E   +  +P+G LR+ +   +G + +   L  +   YPD
Sbjct: 61  AGENYLRRCRQILADVERAEEEASCAHERPAGVLRMHSFASVGHHYVMPALTRYHAQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P 
Sbjct: 121 VSIELSLSQRTPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  +T         E    L   D          +Q N+  S+      G GI
Sbjct: 181 RPHDLGAHACLTLRTPAFPTREWV--LEGPDGVEQIHVAGPVQTNTAESLALAIRDGIGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +LP Y   D   +  LVR++   I     VY  YP       K++ +   +  +  +
Sbjct: 239 GMLPLYSAIDALRDGTLVRVLPRHILQKMNVYALYPSRRFVDAKVRTWVETLRAQVPE 296


>gi|115351667|ref|YP_773506.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115281655|gb|ABI87172.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 310

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 129/302 (42%), Gaps = 13/302 (4%)

Query: 1   MSFDWDKL-----RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L      +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R
Sbjct: 1   MQRKFDDLLLGSIELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G +      +   +L   + E       P+G LRI+     G   +   L  F
Sbjct: 61  QIRLTDSGRRYFEQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YPD+ ++  L N++ID + +  D AIR R P   SSL+ RKL    +   A P YLK
Sbjct: 121 RERYPDVCVETHLSNRNIDFAEEGFDLAIRGRAP-ADSSLVARKLEDAELVVVATPGYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI--MQ 233
               P ++ +L  H  I F   +P       WL        E   +     S   +  + 
Sbjct: 180 RAGVPRAVDDLHAHECIQFE--LPSSGRPIPWLFNDGAAEIEIATTGGYGTSGDVLAGVT 237

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     +IV+ +     L  ++      S      YP A   + +++ F +F+
Sbjct: 238 LARSGAGLFQTYRFIVERDLREGTLAEVLSGQGGRSRPFMLLYPHARYLSSRVRVFVDFL 297

Query: 291 FL 292
             
Sbjct: 298 VE 299


>gi|115359471|ref|YP_776609.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284759|gb|ABI90275.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 293

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 127/291 (43%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + +F  V ++  F  AA+ L +  S++SR+I  LE  +G++L +R  R +  TE G 
Sbjct: 4   LDDMALFVEVVKAKGFRGAADALGMPNSTLSRRIGALEKAIGLRLLHRTTRKVEPTEAGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +  +  +      +L E   +PSG LR +         L   + EF   YP I+ 
Sbjct: 64  LYYERSKRIVEEARLVHEQLGEMLAQPSGLLRASFPEGFANIFLAPLVAEFARRYPGIRF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  L  +  D+  D  D AIR+ +P  +S+LI R+L  +  H YA+P YL    EP    
Sbjct: 124 EFDLSPRLADLVSDPVDVAIRMGEP-ANSNLIARQLARLPRHLYASPRYLDMLGEPQHPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H  +             N   TVD  +G        +NS   I +   L  GIA+L
Sbjct: 183 ELVQHECLRLRGSKSDIWTVQNRDETVDVAVG----GRFLLNSVGMIQRLAALDMGIAIL 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + IV D+     L R++         VY    E      K + F +F+  
Sbjct: 239 AESIVTDDVAQGRLRRVLPQWEATPVPVYALT-ETRLLPAKTQRFIDFLRE 288


>gi|330966209|gb|EGH66469.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 302

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 139/290 (47%), Gaps = 5/290 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA +GSFT AAE+L L+ S++S+ +S LE+ +G++LF R  R L LTE+G 
Sbjct: 7   LKGIETFIAVANAGSFTAAAERLSLTNSAVSKSVSRLESRLGMRLFERTTRSLALTEEGV 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H V + +  +LE  +  L     +P+G+LRI      G+  +   + +F   +  ++ 
Sbjct: 67  AYHAVCTRMLAELEAAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILDFAGQHHKLRP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   ++ +DI  +  D A+R+  P+   + +  R L T  +   AAP YL+    P + 
Sbjct: 127 RVTFTDRFVDIIEEGIDLAVRIGGPLIWPAGVAHRYLGTERVIFCAAPAYLQRHGTPTTF 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  I FG         + ++    +       + L + +  + +       GIA 
Sbjct: 187 EDLGRHACILFGRG-DGSTSPWLFVDEQGQQEARAVEARLVIGNGEAQVAAVTSAWGIAQ 245

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  +++KD      LV I+  + T    ++  +P   ++  K++A    +
Sbjct: 246 LATWLIKDQLQRGELVEILPQLATEGLALHLAWPRNRESLPKVQALVERL 295


>gi|260769861|ref|ZP_05878794.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|260615199|gb|EEX40385.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
          Length = 298

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 10/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V   G+F  AAE+L LS   +S+ ++ LE  + ++L  R  R + LTE
Sbjct: 1   MDKISAMRAFTTVVSEGNFVKAAERLDLSPQLVSKYVAQLEDALKVRLLNRTTRRVNLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        +V   ++  +  L     + SG LR++  +  G + L   +  F   YPD
Sbjct: 61  AGQAYFERCQQVLQDIDDMENALSNLQSQVSGTLRVSAPMSFGVHHLSKPVALFQDRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+L ++ +D+  +  D A+R+   ++ S+L+ +K+  IH+   AAPHY +    P 
Sbjct: 121 VKVELLLTDRKVDLLDEGVDIALRIGH-LKDSALVAKKITPIHLSICAAPHYWQQHGRPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L + N + F    P+     +W   V         S    N+   I+   +LG G 
Sbjct: 180 QFEALSQLNYLRFTYSDPRAWFR-DWPKHVSIHDF---ASDFSSNNGDVIVNAALLGRGY 235

Query: 242 ALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+ P ++        +L  ++         +Y  Y        K++ F +F+
Sbjct: 236 AIQPTFLTGAAIKRGDL-EVLSSFALDPLGLYALYSHREFLASKVRHFIDFL 286


>gi|239833749|ref|ZP_04682077.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239821812|gb|EEQ93381.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 301

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 11/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +RVF  V    SFT AAE L + +S+++  I  LE  +G +LF R  R +  T 
Sbjct: 1   MDRFDAMRVFTRVLERRSFTLAAEDLGIPRSTVTDAIKQLERRLGTQLFLRTTRHVNPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++  + +   +E  +     +   P G LR+     L ++ L   L  FL  Y +
Sbjct: 61  DGQAYYQRCTAILADVEDAEGGFSGA--APKGLLRVEVQGTLARHFLFPELPAFLEKYNE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+  +   ++ +D+  +  DC +R+   +Q S +I R++  +     A+P Y+     P 
Sbjct: 119 IEFYMTEGDRFVDLVREGIDCVLRVGS-LQDSDMIARRVTVLDEITVASPSYISRFGHPQ 177

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              EL + H +I F       +        +   +    I   + VN+  S       G 
Sbjct: 178 HPDELGEGHRMIGF--RASGSITRMPLEFMIGGKLRTVSIPASVTVNAAESYTAAAREGL 235

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GI  +P Y       +  LV+I+         V   YP   + + +++ F +++ 
Sbjct: 236 GIIQIPRYHAMKHIGDGKLVQILTAYPPTPSPVSVIYPRDRQLSPRVRVFIDWLV 290


>gi|170701989|ref|ZP_02892910.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133110|gb|EDT01517.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 320

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + + 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVIVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +L
Sbjct: 127 LSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKHGTPQTIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +                A   R         L VN    +    + G+GIALL  
Sbjct: 187 AHHNYLRRDSNSTMLDSLVIDAAAASRVNLN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|86135842|ref|ZP_01054421.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85826716|gb|EAQ46912.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 295

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 137/291 (47%), Gaps = 6/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +   GSF  AAE L +S + +SR+I  LE  +G  L  R  R ++LT+ G   +
Sbjct: 7   MNAFRRIVERGSFARAAEDLRVSPALLSREIKLLEESLGTVLLTRTTRSMSLTDAGQLFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +   +   +  +++ + +  G L++  +   GQ ++   L      YPD+++ L 
Sbjct: 67  DEASGILDAVFQVETRIRDGAGEIRGHLKVNASSSFGQTVIAPILPGLFDAYPDLRLTLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ ID+     D +IR+R  +  S+L+ RKL       +AAP YL++   P   Q++ 
Sbjct: 127 LDDRVIDMVEGGFDVSIRIRAAMPDSALVARKLGRTRQQVFAAPSYLESVGAPQKPQDVV 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H +I F  L+   +  +  L +    +       ++V + L +    + G GI  LPD+
Sbjct: 187 NHRVIGF--LLADHLSAWT-LHSPSETVTVDLDPPIRVGNSLVLRDLLIAGQGIGTLPDF 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + KD      LVR++ D   P+  +Y      L    K+ AF + +    R
Sbjct: 244 VSKDAVARGELVRVLPDWELPAPEIYAVTASRLGMDAKVTAFLDHLCEALR 294


>gi|152981622|ref|YP_001353551.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281699|gb|ABR90109.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 307

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 125/297 (42%), Gaps = 8/297 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A +GSF+ AA +L L+ +++ + ++ LE  + ++LF R  R LTLTE G +  
Sbjct: 7   IECFVRSAEAGSFSEAARRLGLTSAAVGKNVARLEANLSVRLFQRSTRRLTLTEAGERFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S     +++    L  +  +P+G L+I+     G++ +   L +FL  YP I     
Sbjct: 67  AEVSGGLAVIQSAVANLASADGQPAGTLKISMGTGFGRHYIVPLLGDFLTRYPAITPDWH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            DN+ +D+  +  D AI     +    ++ R L   H    AAP Y        S  EL 
Sbjct: 127 FDNRRVDMIAEGFDAAIGGGFELP-PGVVARTLGPSHGILVAAPDYFDTHTPLASPSELG 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP-- 245
           +H+ I         +  ++     +          + ++   +  +    G GIAL+   
Sbjct: 186 QHDGIFIRSPQTGRIRPWSLRNKGNEQAPVAMRVRMTMSDPDAACEAAQSGLGIALVSVP 245

Query: 246 ---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
               Y+  ++  L R++ D      T+   +P       K + F +++    R  KF
Sbjct: 246 NALRYL--ESGRLKRVLPDWYVDIGTLSLYFPAQKLLPAKTRVFVDYVVEHFRTEKF 300


>gi|91792127|ref|YP_561778.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91714129|gb|ABE54055.1| LysR, substrate-binding [Shewanella denitrificans OS217]
          Length = 299

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 130/294 (44%), Gaps = 12/294 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  +A  GSFT  AEQ + S+S +S++IS LE ++G +L +R  R + LT 
Sbjct: 1   MDKLRGMQLFVRLADLGSFTRVAEQTNSSKSMVSKEISRLEADLGARLLHRSTRNVQLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  KL   +   Q+  +   GKL+I   + LG   L     +F+  +P+
Sbjct: 61  VGEGYLVRAREILAKLADAESFAQDQQLNLRGKLKINAPMALGITDLSSLFADFMQAHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L ++ ID+     D   R       S+ + R L        A+P YLK      
Sbjct: 121 IELDIHLGDESIDLVEQGFDLGFRASSTPIDSNYVGRALTAFTYRVCASPDYLKQHPSID 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L  HN   +     K +             G      LQVNS L +M+    G G+
Sbjct: 181 SPEDLQAHNCFVYSYFHGKNIWPI--------EDGVAVKGNLQVNSTLFMMESIKKGLGL 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +PD++ +   D+  +V ++ D   P  T+Y  YP       KL     ++ L
Sbjct: 233 GFIPDFVCQQAIDSGQVVEVLADAKKPKLTLYALYPARHFVPAKLVECIEYLTL 286


>gi|297537387|ref|YP_003673156.1| LysR family transcriptional regulator [Methylotenera sp. 301]
 gi|297256734|gb|ADI28579.1| transcriptional regulator, LysR family [Methylotenera sp. 301]
          Length = 307

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 129/299 (43%), Gaps = 4/299 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +  F   A  GSF+ AA +L ++   +S+ ++ LE ++G++LFYR  R L LTE G
Sbjct: 3   TLSSIESFVRSAELGSFSAAARRLSMTPGGVSKNVAKLEADLGVRLFYRSTRSLKLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  +     ++T          +P+G L++A  +  G++ +   L EFL LYP I+
Sbjct: 63  EHFLAQVTGGLDAIQTAIANASREGGQPAGTLKVALGLAFGRDHILPLLGEFLTLYPAIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+  +  D AI     + +  ++ R+L  IH+   A+P YLK+   P + 
Sbjct: 123 PDWRFDNRQVDLIGEGFDVAIG-GGIVLAPGVVVRELAPIHLVLVASPAYLKSKFMPQTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL K + +         +  +N                + +N   ++    +   GIA 
Sbjct: 182 AELYKLDALVRYSQTSNQITPWNLKTVAGNQATIELQPRVTLNDPEALCHAAMASLGIAH 241

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +P        ++  LVR++ D  T    +   +        K + F +FI  K R  + 
Sbjct: 242 VPMPHALQHLESGKLVRVLPDWYTEHGVMSLYFSAKKLMPAKTRVFVDFIVDKFRTQQL 300


>gi|170720882|ref|YP_001748570.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758885|gb|ACA72201.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 308

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 123/303 (40%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F      GSF+ AA    ++ S+IS+ I+ LE  + ++LF R +R LTLTE
Sbjct: 1   MDQYSQMLAFIWSTECGSFSAAARAHEMTPSAISKLIARLEDRLRVRLFQRGSRVLTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+   R    V   +       +    + SG LRI T     +  +   L EFL  YP 
Sbjct: 61  EGAAYLRSAKAVVEAMSEADSLAEGLPSRVSGTLRIHTMTSFAKQQIVPWLPEFLDTYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++ L  + ID      D AI     + SSS I +K+        A+P YL+    P 
Sbjct: 121 LDVEIQLGAQFIDQFEQGLDIAIH-SGILPSSSRIAKKIGECEWLLCASPDYLEKYGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H    F    P     F         +  P            +      G+GI
Sbjct: 180 QPQDLMNHRCFNFSFASPWNKWAF---IQDGLGVTTPVKPRGSFTQGELLRDMAKSGAGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLK--AR 295
             L D+ +     + +LV ++++        +Y  Y +    + +++ F  F   K  A 
Sbjct: 237 VRLADFHIGKDIQDGSLVLLLDEYKAEILEPIYLLYSDRKHLSPRIRVFIEFFQEKWIAH 296

Query: 296 DWK 298
            WK
Sbjct: 297 PWK 299


>gi|194364837|ref|YP_002027447.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347641|gb|ACF50764.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 324

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 5/292 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  +A   SFT AA+++ +S+ ++S+ +  LE ++G++L +R  R ++LTE+G +L
Sbjct: 14  HLAGFAHIAHHRSFTKAADEMGISRPALSQNLKTLEKQLGVRLLHRTTREMSLTEEGQRL 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     +E     L+ +   PSG LRI T     + L++ +L EF   +P+++I+L
Sbjct: 74  FDALRPSLGTIEAAVRGLRANHDAPSGLLRINTARLTAKTLIEPHLPEFFARFPELRIEL 133

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D+    I  D  D  IRL + +    +       + M   A+PHYL     P +  EL
Sbjct: 134 VMDDGLSSIVADGCDAGIRLGERLAEGMIAVPVTPMLEMVVAASPHYLARHGTPTTPAEL 193

Query: 187 DKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
             H  + +       +   +F+                   N    +++  + G G+   
Sbjct: 194 ASHECLGYRQTGSGNIYAWEFSTPGQPGHDFEVEPRGRYVSNDDEGMIRAALQGLGVMQH 253

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            D  ++    +  LVR+M +  TP    Y   P   +   +++A   F+  K
Sbjct: 254 IDLSLQPMLADGRLVRLMPEWSTPFPGFYLYVPSREQMPPRVRALMEFLIEK 305


>gi|238797940|ref|ZP_04641431.1| HTH-type transcriptional activator aaeR [Yersinia mollaretii ATCC
           43969]
 gi|238718245|gb|EEQ10070.1| HTH-type transcriptional activator aaeR [Yersinia mollaretii ATCC
           43969]
          Length = 303

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LETE+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFARVVECGSFTAAARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     + L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSGLFSRRLGSMPMVVCAAKSYLLQHGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMINFSWLEYSVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLKAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGEVEVLFKKYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|86146076|ref|ZP_01064402.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85836023|gb|EAQ54155.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 306

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F+ + +   FT AA+ L++S S IS+Q++ LE  +GIKL  R  R LTLTE G   +
Sbjct: 1   MVIFHALIKHEGFTSAAKSLNVSVSHISKQVALLEDSIGIKLVQRTTRSLTLTEAGEVFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++++ ++  Q+++       SG  RI  +   G   +   + +   LYP ++I++ 
Sbjct: 61  QHCEQLFNTVKAAQMDMDSQRDDISGIFRIGLSQSFGTLHIIPAIDQLRQLYPQLRIEVH 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D  I   + +     I ++L        A+P YL     P    +L 
Sbjct: 121 LFDYKVDMIEERLDLWITNNEDLP-EGYIAQRLADSQFVVAASPDYLIKAGTPHVPSDLI 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            HN + +     +  +  +W     +     +++    V+   ++    V G G+A L  
Sbjct: 180 DHNCLIYRS---RERDYTSWAFDNGQENLSVKVAGDYSVDLAEAVRDAAVSGWGVAYLAT 236

Query: 247 YIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           Y+VK+      L++++ +         Y  YP       KL A   FI
Sbjct: 237 YLVKEEFRTGKLIQVLPEWRASQLMPFYAVYPSRKNMPKKLSAVIEFI 284


>gi|107023136|ref|YP_621463.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686624|ref|YP_839871.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893325|gb|ABF76490.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652339|gb|ABK12978.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 310

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 124/295 (42%), Gaps = 5/295 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D+    VF  VA   SF  AA +L ++ S++S  +  LE  +G++L  R  R  +LTE
Sbjct: 14  NVDFFSFTVFLAVAARRSFRGAATELEITPSAVSHSVKALERRLGVRLLNRTTRSTSLTE 73

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L          ++    E+ +    PSG +RI  +    + +L+  L  FL  YP+
Sbjct: 74  AGERLAAKLRPAVSIIDEAMREVDDLRSAPSGTVRINASEGAIRLILRPVLARFLKSYPE 133

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++ D +  DI     D  IRL + +    +    +  +   A A+P Y      P 
Sbjct: 134 VHLDIVSDGRLTDIVAAGFDAGIRLAEAVPQDMVAIPLMGNVRFAAVASPAYFAAHGRPA 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H+ I F        +                   L +     ++   + G GI
Sbjct: 194 TPHDLYRHDCIRFRFESGSIYQWE--FERRGVSETIDVSGSLTLTDQPLMVDAAMDGIGI 251

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A +PD++V +   +  L R+++D   P   +   YP     +  L+A   FI  +
Sbjct: 252 AFVPDHLVIEPLRDGRLERVLDDWCAPFPGLCLYYPGHRHVSQALRALIAFIKSE 306


>gi|323166519|gb|EFZ52282.1| hypothetical protein SS53G_3197 [Shigella sonnei 53G]
          Length = 307

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLVIKERDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITIEFL 291


>gi|212711164|ref|ZP_03319292.1| hypothetical protein PROVALCAL_02236 [Providencia alcalifaciens DSM
           30120]
 gi|212686332|gb|EEB45860.1| hypothetical protein PROVALCAL_02236 [Providencia alcalifaciens DSM
           30120]
          Length = 297

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 5/296 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++  F  V  SGSFT AAE L LS+S +S  I  LE  + + L  R+ R + LT
Sbjct: 1   MQKNLKQITSFLQVVDSGSFTKAAEVLGLSRSMVSIDIKQLEKSLNVSLLVRNTRNIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  ++E      Q  +   +G LR ++T + GQ  +   + EF   YP
Sbjct: 61  EVGKHFYDDFKRIQLQIEEAFERNQNLATNITGTLRFSSTNEFGQRYVLPLVPEFCRQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q   ++   D+  +  D AIRL   +++SSL  RKL    ++  A   +L+  +  
Sbjct: 121 QLRLQYSFNSSFDDLLAEKLDIAIRLGN-LKNSSLKSRKLGEYAIYLVATAEFLEQYQV- 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L     IT   L  +  +        ++       S  + NS  +I Q  +   G
Sbjct: 179 ENVDDLANIPWITHTLLNLQDSQYALQNRHGEKFELPLLNSQYESNSAETIRQLALASLG 238

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            A+ P ++V+++     L+R++ D+  P   +   YP       K +AF +F+  K
Sbjct: 239 AAICPAWLVEEDLNAHRLIRLLPDLELPKQNIQLLYPNTQNLPAKTRAFIDFLVKK 294


>gi|194434892|ref|ZP_03067138.1| transcriptional activator AaeR [Shigella dysenteriae 1012]
 gi|194416868|gb|EDX32991.1| transcriptional activator AaeR [Shigella dysenteriae 1012]
 gi|332086509|gb|EGI91656.1| HTH-type transcriptional activator aaeR [Shigella dysenteriae
           155-74]
          Length = 309

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 130/287 (45%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRHLGAMPMVVCAAKSYLTQYGIPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +        E         RPI + R      N  ++++++   G+GIA +
Sbjct: 183 DLSSHSWLEYSVRPDNEFELIAPEGISTRPIPQGR---FVTNDPMTLVRWLTAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P  +++ +     L  ++    +    VY  Y E  K   K++   N
Sbjct: 240 PLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 286


>gi|172062227|ref|YP_001809878.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994744|gb|ACB65662.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 302

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 131/293 (44%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V   GS T  A  L  + S +SR I+ LET +G++L  R  R L+LTEQG 
Sbjct: 8   LGDVEAFVTVIEKGSMTAGAVALGSTPSVLSRAITRLETRLGVQLLRRSTRRLSLTEQGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +   +  ++  +  +Q      +G +R++     G   L   L++F   +P++++
Sbjct: 68  LYLEQSRAAFLLIDDAERAIQGHGGTLTGHVRLSVPTTYGHYRLPPLLRQFTQQHPEVRV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L + N+++D+  +  D AIRL + +  S L+ RKL    +   AAP Y+     P ++ 
Sbjct: 128 ELNIANRNVDLVAEGFDLAIRLGE-LPDSGLVARKLEDAALCLVAAPEYVARAGMPENVA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H  + F  ++P       W+   D    +  P  +    +  L ++     G+GI 
Sbjct: 187 DLAHHLCLPF--MLPSSGRIAPWVFRDDGQDIDWLPPSNVAVSDDVLGVVSMAQSGAGIC 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              D+IV+D     +LV ++  +   +      Y    + +   +A  + I  
Sbjct: 245 QTYDFIVQDRVRAGSLVEVLPHLRGRTRPFSVIYAPHRRLSAASRALIDLIVA 297


>gi|15598331|ref|NP_251825.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107102684|ref|ZP_01366602.1| hypothetical protein PaerPA_01003749 [Pseudomonas aeruginosa PACS2]
 gi|116051131|ref|YP_790038.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890664|ref|YP_002439528.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254236104|ref|ZP_04929427.1| hypothetical protein PACG_02064 [Pseudomonas aeruginosa C3719]
 gi|254241829|ref|ZP_04935151.1| hypothetical protein PA2G_02546 [Pseudomonas aeruginosa 2192]
 gi|296388363|ref|ZP_06877838.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313108458|ref|ZP_07794462.1| putative transcriptional activator [Pseudomonas aeruginosa 39016]
 gi|9949248|gb|AAG06523.1|AE004737_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115586352|gb|ABJ12367.1| putative transcriptional activator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168035|gb|EAZ53546.1| hypothetical protein PACG_02064 [Pseudomonas aeruginosa C3719]
 gi|126195207|gb|EAZ59270.1| hypothetical protein PA2G_02546 [Pseudomonas aeruginosa 2192]
 gi|218770887|emb|CAW26652.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310880964|gb|EFQ39558.1| putative transcriptional activator [Pseudomonas aeruginosa 39016]
          Length = 306

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/295 (28%), Positives = 137/295 (46%), Gaps = 12/295 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D   +F  V    SFT AA+ L + +S++SR+I+ LE  +G++L  R  R L LTE 
Sbjct: 1   MGLDDALIFTRVVEYHSFTQAAQSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++ H     +  + +    PSG LRI + I+ GQ  L   L +F+  YP I
Sbjct: 61  GQAYYERCRQIMHDFAEAEQAVMQLQQAPSGLLRITSPIEFGQMFLASLLGDFMRQYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++ L ++ +D   +  D  I + +P + S+L+ R+L++      A+P YL     P S
Sbjct: 121 TAEVELASRSVDPLQEGVDIVIMVGQP-EDSTLVARRLLSTSRWLCASPDYLAAHGTPTS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL  H  +       +      W  + D     P    L  N+     +  V G+GIA
Sbjct: 180 VAELAGHRAVLLSTDSQRY-----WPLSGD---SLPCQRVLSCNNITFAREAVVAGAGIA 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LP  I  +   +  LVR++ DV  P   +Y  YP       K+KAF +F+  + 
Sbjct: 232 ALPALICAESVHSGRLVRLLADVPLPVGELYAVYPSRRFQAMKVKAFLDFLISRL 286


>gi|293394899|ref|ZP_06639189.1| transcriptional regulatory protein [Serratia odorifera DSM 4582]
 gi|291422650|gb|EFE95889.1| transcriptional regulatory protein [Serratia odorifera DSM 4582]
          Length = 303

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 12/292 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L+ F  VA +G  + AA +L +++S +SR+++ LE  +G++L  R  RG  LTE G
Sbjct: 7   NIEELQTFVEVADAGGISPAALRLGIAKSIVSRRLARLEKALGVQLLARTTRGTALTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +      +    +++  + E    + +  G+LR+A  +  G       + E    +P + 
Sbjct: 67  ATFRDYAARACAEIDAAR-ETILPTGELRGRLRVAVPLSFGSTHFAPAIAEMARRHPRVN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           IQ    ++ +D+  +  DCAIR+   +Q S+LI R++  I+    A+P Y++   +P S 
Sbjct: 126 IQACYSDRFVDLIAEGYDCAIRVGY-LQDSNLIARRIGPIYGKLVASPDYIQAHGQPNSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H  +  G    +       L   D+ I        + ++  +++     G GIA 
Sbjct: 185 EELLSHQALMQGTETWQ-------LTDGDKIITVRPQGRFKADNGTALVAAATAGLGIAY 237

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD +   +     LV +M +   P    Y   P       K++     +  
Sbjct: 238 LPDCLTHPHLASGALVPVMINHPPPPAGAYVIRPPGQHPARKIRVLTELLIE 289


>gi|218677106|ref|YP_002395925.1| Transcriptional regulator [Vibrio splendidus LGP32]
 gi|218325374|emb|CAV27460.1| Transcriptional regulator [Vibrio splendidus LGP32]
          Length = 300

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 141/306 (46%), Gaps = 16/306 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  +++VF  +  SGS T AA++L LS+S +S  + GLE  +G+KL  R  R  +LT
Sbjct: 1   MKNELHRMQVFAQIVESGSITKAADKLDLSKSVVSHHLQGLEQHLGVKLLTRTTRRQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G + ++   E+   +   + E++ES    +G + I +   L  +L+   + EF+  +P
Sbjct: 61  DAGQRFYQRCLEMRKLMSLAEEEVRESCSDFAGTITITSPHTLMTHLIGPAMCEFMKSHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-- 178
            I+ QL+ ++  +D+   Y D ++ +   +  S+    KL  +H      P YL   +  
Sbjct: 121 RIEPQLLANDMRVDLIEKYIDLSVTVGA-LPDSTSRAIKLGELHQVLCCHPDYLTKVQIL 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQY 234
           +P++  +L +++ I          E  N   + +   G+      +     +S  +I   
Sbjct: 180 QPITPSDLSQYDYIA------NQWEGINSQRSFEINKGKVSTYQFRASRIGDSVPTIRMM 233

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G GIA LP   ++++     LV I+        + Y  +   L+   +++AF   + 
Sbjct: 234 ALNGLGIACLPKQAIEEDLKKGTLVNILPKDQVLKASFYVVHNYGLQVPARIRAFIEHLK 293

Query: 292 LKARDW 297
             A  +
Sbjct: 294 QHAESY 299


>gi|17547997|ref|NP_521399.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430303|emb|CAD17068.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 303

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 125/295 (42%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   GS   AA    ++   I R+I+ LE  +G++L +R  R + +TE
Sbjct: 1   MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVRLLHRSTRRIAVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG+       +   +L+  ++ + E   K +G L ++     G+  +  +   FL   PD
Sbjct: 61  QGAVFMEQCKKALSELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPAFLRANPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++   L ++ +D+  +  D  IR+   I   + +  +L +        P Y      P 
Sbjct: 121 VRLSFNLTDRVVDLVREGYDLGIRIGGAI-DPNFVAIRLASNQRVVCGTPDYFARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           ++ +L +HN + F     +  +   W    +  +   R+S  L  N    + ++   G G
Sbjct: 180 TLDDLSRHNCLAFNL---QGGQQRGWYFQHNGRMVTVRVSGNLDCNDGELLHRWMGEGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     + ++   ++  L+ +++D   P + +   YP+      K++ F   +  
Sbjct: 237 LGWRSTWEIQPELESGALMTVLDDYALPGYDILAVYPQQRPVPAKIRFFIEHLKA 291


>gi|119476794|ref|ZP_01617104.1| Transcriptional regulator [marine gamma proteobacterium HTCC2143]
 gi|119450050|gb|EAW31286.1| Transcriptional regulator [marine gamma proteobacterium HTCC2143]
          Length = 305

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 137/294 (46%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L +F  + R GS + AA+ L +S+SS+S+Q++ LE E+G +LF R  R + LTE G
Sbjct: 7   DMQGLVLFSHINRLGSLSAAAQLLGISRSSVSKQLAALEREIGSRLFNRTTRKIVLTEVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++ +   +V   L+T     ++     +G L +      G+  L   + +FL  YP+I 
Sbjct: 67  RRVLQEAHKVELALQTVNHISEDFQSVIAGDLNVTCASAQGRMHLVPLITKFLARYPEIN 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L+++ +D+  +  D +IR+   +  S+LI RKL  +     A+P YL N     + 
Sbjct: 127 VNLQLEDRVVDMIAENLDISIRIGY-LPDSTLIARKLGDLSGVLCASPEYLSNAPPLQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + + +             + +          L +N   +++   +  +G+ L
Sbjct: 186 ADLLHHRCLFYRNAKLGMNSWS--FISDEGEESVTVSGPLSINDPGALISAALAHAGVLL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +   ++ D   +  L+ ++    +  +  +Y  YPE      K +A  +F+  +
Sbjct: 244 IDKGLLGDTMQDGRLIPVLTSYQSIGTLPMYIVYPEREFIPAKTRALVDFLLEE 297


>gi|115522738|ref|YP_779649.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115516685|gb|ABJ04669.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisA53]
          Length = 307

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 135/298 (45%), Gaps = 7/298 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D++ L +F  V    SF  AA +L +S++++S+ ++ LET +G +LF R +R L L
Sbjct: 1   MKLPDFEALAIFAKVVELRSFAAAAAELAVSKATVSKAVTRLETRLGARLFNRTSRRLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G +L    + +    E  + E    S  P G +R+A  +  G  ++   L  FL  Y
Sbjct: 61  TDAGHRLAERAARLLADGELAENEALAQSGTPRGLVRLAVPMTFGVKVIAPLLPAFLDKY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I I L   +  +D+  D  D  IR+   +  SSL+ R+L  +  +  A+  YL+    
Sbjct: 121 PEISIDLHASDAMVDLIGDGFDAGIRIAS-LPDSSLLARRLCAMPRYTVASKTYLERHGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P     L +H  + +  L       ++        +       L+VN+  ++M   + G 
Sbjct: 180 PTHPMHLAQHRCLGYAYLSTPNAWHYS--NAAGEQVAVRPAGPLRVNNGEALMPALLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIA LP++I+     +  +  I++        V+   P       +++   +++  K 
Sbjct: 238 GIADLPEFIIGKALASGAVEEILQGWHQREGAVHLVTPPGGPRPARVELLADYLAEKL 295


>gi|296162467|ref|ZP_06845258.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887280|gb|EFG67107.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 363

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 9/299 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 36  MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKL 95

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+ 
Sbjct: 96  ALTEAGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSQILPEFMH 155

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R  P ++++++ R L         AP  L+ 
Sbjct: 156 RYPEVRVVMRVTNRVIDLFEDSVDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQ 215

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L++    T           +N +A             L     ++I +  +
Sbjct: 216 NAPPLLPADLNRFE--TLDVPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMTIREAVL 273

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G GIA LP+ +         L  +M     P+  +Y  +         ++AF +++  
Sbjct: 274 AGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVFVSRQGMVPAVRAFVDYLVE 332


>gi|258621279|ref|ZP_05716313.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258626491|ref|ZP_05721331.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258581202|gb|EEW06111.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258586667|gb|EEW11382.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 307

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 63/288 (21%), Positives = 125/288 (43%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  +
Sbjct: 1   MALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+   +   Q E+++   + +G +R+  +   G   +   L++    YP++++++ 
Sbjct: 61  SQCRELLTIVTNAQSEMEDQRDEVAGLIRLGLSQSFGTLHVLPALEQLRQQYPELKVEVH 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +D+  +  D  I   + +     + +++        A+  YL     P    +L 
Sbjct: 121 LFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASAEYLLRHGTPAQPMDLM 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            HN + +        +   W  + D      ++S    V+   ++    V G GIA L  
Sbjct: 180 DHNCLIYRS---WERDYTRWSFSRDGQSQTVKVSGNYSVDLAEAVRDAAVAGWGIAYLAT 236

Query: 247 YIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y+++D      L++++ +         Y  YP       K  A   FI
Sbjct: 237 YLLRDEFRTGQLIQLLPEWCANQQMPFYAVYPSRQHMPKKTSAVIEFI 284


>gi|148549724|ref|YP_001269826.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513782|gb|ABQ80642.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 298

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+VF  V   GS + AAEQ+  + S++SR +S LE ++G  L  R  R + LT
Sbjct: 1   MKTRSEELQVFVAVIDCGSISAAAEQMGQTPSAVSRTLSRLEGKLGTTLVNRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G      +  +  +++  +  L  +   P+G+LRI        + +   + EF   YP
Sbjct: 61  EEGRYFLERSRLILQQMDEMEERLSMNRQTPTGRLRINAAAPFMLHAILPWIGEFRRQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D+  ID+     D AIR+ + +  SSL  R L    +   A+P YL+    P
Sbjct: 121 GIELELNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARSLGCSPVQVLASPAYLEQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++EL  H L+ F              A  DR    P    L  +S  ++ Q  + G G
Sbjct: 180 RQVEELANHCLLGFSQPESLNHWPLRH-AQGDRWSIRP---ALVASSGETLRQLALAGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L  ++  ++     L  ++ +        ++  Y    +   +++ F +FI  K   
Sbjct: 236 IVSLSHFMTHEDIRTGRLQVLLSEANNGYRQPIHAVYYRNTQLALRIQCFLDFIQRKLAM 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|298489036|ref|ZP_07007059.1| Transcriptional regulatory protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156534|gb|EFH97631.1| Transcriptional regulatory protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 302

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 131/293 (44%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L VF  V + G+FT AA +L +S S++ + I GLE  +G++L  R  R +T TE G 
Sbjct: 12  LDDLAVFATVGQEGNFTRAAARLGVSASAVGQTIRGLEERLGVRLLTRTTRSVTPTEAGD 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL R    +  ++        E S +PSG +RI+      + +L   LK  +  YP+I I
Sbjct: 72  KLLRGLVPLLDEINAQVDAALEYSERPSGTVRISADEFAARAILWPRLKSVMAHYPEITI 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI D    DI  +  D  +RL   I +  +       + M   A+P YL     P + +
Sbjct: 132 ELITDYGMTDIVAERFDAGVRLGGTIAADMIASPISGEMRMVTVASPEYLSRHPAPQAPE 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL  H  I     +P     + W  +        R+   L +NS   I+  C+ G G A 
Sbjct: 192 ELTSHKCINL--RLPTHGGLYPWEFSSQGREFRVRVGGPLIMNSVYQILDGCLEGIGAAQ 249

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP+ +V    +N  L+ I+     P    +  YP   ++T   +   + +  +
Sbjct: 250 LPNGLVDRYLENGELIEILAAWSEPFQGYHLYYPSRRQHTAAFRVVLDALRAR 302


>gi|171056951|ref|YP_001789300.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774396|gb|ACB32535.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 302

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 139/293 (47%), Gaps = 7/293 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           ++F  +  + SF+ AA +  ++Q + ++ ++ +E  +G +L +R  RG+T TE G+  + 
Sbjct: 8   QLFIRIVETASFSKAAAEFGITQPTATKSVAAMEQRLGARLLHRSTRGVTPTEVGALYYD 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +  +++           +  G LRI+T++  G+ ++   +  ++ L+P++ + L  
Sbjct: 68  KCKLIAREIDAADNLATLLQSQVGGTLRISTSVAFGRRVVVPLVLRYMRLHPEVTVDLAF 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++ +++     D AIR+ + +  S+L  R L T      AAP YL+    P +  +L  
Sbjct: 128 DDRYVNLVEQGVDLAIRMGR-LADSALGARYLGTNPWLMAAAPAYLREHPAPATPADLAA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  + +  +  +  E ++           P    L+ N+  +++     G G+A+LP Y+
Sbjct: 187 HACLVYSSV--QGDERWSLTTPAGEETSVPVRGPLRSNNLSAVLAAARAGMGLAVLPWYV 244

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
            ++   +  +  ++ D + P+  V+  +P       K+  F  F+    A +W
Sbjct: 245 ARESVADGAITPVLADHLLPAQAVHAVFPSPRLVPLKVTNFIAFLQQALAGEW 297


>gi|114569100|ref|YP_755780.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114339562|gb|ABI64842.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 296

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D LR+F  VA  GSFT AAE+  ++  + S+QI+ LE  +  +LF R  R + LT+
Sbjct: 1   MDRIDALRLFCSVAELGSFTKAAEREAMTPGAASKQITALEQRLQARLFERTTRSVRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L         + +  +  + ++   P+G LR+A  +D G   L   +  F+  +P 
Sbjct: 61  AGEALLDRVRPWLDEYDGLEQGVADARSAPAGVLRVAAPVDFGARRLMPIITRFMNDWPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L ++ +D+  +  D  IR+   +  S+LI ++L    M   A+P YL     P 
Sbjct: 121 VEVRLSLADRMVDLVNEGFDVGIRIGN-LPDSALIAKRLAAACMSVVASPDYLARAGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H ++   +     +  F         +       L +N  ++ +     G GI
Sbjct: 180 HPSDLAQHEIVIDRNKPAPHLLKF---IREGEEVEVRVSGRLSLNGAVAAVTAASAGVGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A  P +  +       +V I+ D  +    ++  +P       +++ F +F+  +  D
Sbjct: 237 ACSPRWAAEQALAEGRVVEILTDWSSELRYLWAVFPSNRYLAHRVRLFVDFVAEQFPD 294


>gi|188581364|ref|YP_001924809.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179344862|gb|ACB80274.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 313

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 131/290 (45%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF VVA + SF  AAE+L LS++++S+ ++ LET +G +LF+R +R L LTE G
Sbjct: 6   DFEAWAVFAVVADALSFARAAEELGLSKATVSKAVARLETRLGARLFHRTSRRLALTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  +    +++  P G++R+A  +  G   L   L EFL  + ++ 
Sbjct: 66  RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHLAPVLPEFLAAHREVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     A P YL+    P   
Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLERYGAPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L     + +  L       F         +       L+ N+  ++      G G+A+
Sbjct: 185 EDLKSRACLGYAYLPTPDRWPFT--NAAGETVAIIPEGPLRANNADALAPALRAGLGLAV 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            PD+ + ++     L R+M D   P   +    P  L    ++ A   F+
Sbjct: 243 QPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292


>gi|71736089|ref|YP_274501.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556642|gb|AAZ35853.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 300

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 127/297 (42%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  +ISR+++ LE ++G++LF+R  R ++LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    E  +  L+  +   SG LR+      GQ ++   L   +L  P +
Sbjct: 61  GEVFLPHAKTILEASEAARTTLKADAGSASGVLRVTAPSVFGQTVIMPLLPALMLENPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI+    D AIR+   I+ S+L+ R L         +P YL    +P  
Sbjct: 121 SIDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCVSPDYLARHGKPTL 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++EL  H  I    +                PI          NS  ++   C  G G+A
Sbjct: 180 LEELRHHPCIALHAMPWWP------FTRNGEPITIRAQGPFSANSVEAVRTACKQGMGLA 233

Query: 243 LLPDYIVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +L  + V+      +L ++  ED +    +V    P   +   +++ F + +    +
Sbjct: 234 MLTYWDVRQEINEGSLQQVDFEDAMPEQLSVTAVLPTRQRVPHRVRLFIDRLEAALK 290


>gi|13470517|ref|NP_102086.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14021259|dbj|BAB47872.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 308

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F   A SGSF   A  L +S   +++ ++ LE  +G +L  R  R  +LT 
Sbjct: 1   MDRLASMTAFVKAAESGSFAATASALGISPQMVAKHVTYLEARLGARLLNRTTRKQSLTV 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +        +++       E+  KP G LR+   +  G + +   +  +L  +P 
Sbjct: 61  IGKSYYDRCKVALAEVDWADAIADEARGKPRGLLRVNAAVSFGAHCVTPVVARYLSSHPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+L+++ +D+  D  +   R+  P+  S+L   +L      A  +P YLK    P 
Sbjct: 121 VDVDLVLNDRFVDLIDDGFEAVFRIG-PLGESNLGAIELAPFQTIACGSPAYLKERGMPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            + +L  H  + FG+       D  WL   D    +  +   L+VN+  S+++  + G G
Sbjct: 180 IVSDLVNHECLLFGNWPEPTFSD--WLFVRDGLTSKASVHGRLKVNNPASLLEAALAGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +AL+ +  V+ +     LVR++ +  TP   ++  +    + T KLK F   +  + 
Sbjct: 238 LALIGEEAVRTHLATGRLVRVLPNYETPPRPIHLLFHPDRRQTPKLKTFIEMVVDQL 294


>gi|212637409|ref|YP_002313934.1| helix-turn-helix domain-containing protein [Shewanella
           piezotolerans WP3]
 gi|212558893|gb|ACJ31347.1| Helix-turn-helix, Fis-type [Shewanella piezotolerans WP3]
          Length = 310

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L ++++++SR+I+ LE + G++L +R  R L LTE 
Sbjct: 1   MDLNRVQMFAQVVEQGSFTKAAKALGITKATVSRKIAELEADAGVQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  +     +  +L+  + +L  S    +G L+I   I+LGQ      L  FL  YP I
Sbjct: 61  GANYYNRVHHILSELQNAEDQLSASQQTITGHLKIICPIELGQLYFGQILARFLNAYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I   L N+ +D+  +  D   ++ +  ++ +L    L+       A+P YL     P  
Sbjct: 121 TIDAELTNRKVDVIGEGVDFLFQITEK-RNEALQTYALLNTPKVLMASPKYLAKHGTPQI 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  I      P     ++          EP+ S L+ N+   + +  + G GIA
Sbjct: 180 PEDLSQHQCIRLS--TPYVDNSWSLFNGEKWVTFEPK-SRLETNNITLVREAAIEGLGIA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P  I     +N +LV +++D       +    P+ +    K + F  F+
Sbjct: 237 TVPMIIASEAIENGSLVTVLQDYPMKQNLITISMPKRVYLPRKYRVFTEFL 287


>gi|90577797|ref|ZP_01233608.1| transcriptional regulator [Vibrio angustum S14]
 gi|90440883|gb|EAS66063.1| transcriptional regulator [Vibrio angustum S14]
          Length = 306

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 134/304 (44%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LTE
Sbjct: 1   MDKFSDMTLFISIVKNQGMAAAGRELGLSPATVTARLQALEDRYGVKLLNRSTRHISLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  H+   E+   ++ T+  LQ  S +  G L+I+   D+G+  +   +  F   YPD
Sbjct: 61  SGSLYHQACLEIIDSVKETENLLQTGSQEVRGTLKISAPRDIGKQYISPIISAFCERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L LD+K  +++    D  IR  + +  S+LI RKL        A P YL N   P+
Sbjct: 121 VVPYLYLDDKLTNLAESGIDIVIRYGE-LADSNLISRKLAGSRRVLCATPEYLANKGTPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L  H+ +    +I    E   W  T D       +   +  +    I Q+ + G+G
Sbjct: 180 TPQDLADHHCLA---MIRSNEELKTWHFTDDNQQTVITLVPKRFSDDGEVIRQWALDGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDV--------ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     ++ +     LV +++           + S  +   Y        +L+ F  F
Sbjct: 237 IALKSILDIQHDIKEQRLVTVLDGYMKNFNASTASASADLNVIYQSRQYQPKRLRLFIEF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LLER 300


>gi|290476311|ref|YP_003469215.1| putative transcriptional regulator [Xenorhabdus bovienii SS-2004]
 gi|289175648|emb|CBJ82451.1| putative transcriptional regulator [Xenorhabdus bovienii SS-2004]
          Length = 304

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 132/296 (44%), Gaps = 11/296 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  +   GS   AAE+L +S++ +SR ++ +E   G++L +R  R ++LT  G   ++
Sbjct: 8   QVFVTIVEQGSLVAAAERLDMSRAMVSRYLAEMEKWAGVRLLHRTTRKISLTSAGENAYQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            + ++    ET  ++    S    G LR++ +  LG + L   + EF+ +YP I + L +
Sbjct: 68  RSLKLLELAETMPVQQSLVSQTLRGLLRVSCSQSLGTSALSVAIPEFMRIYPQIAVNLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +NK I++  +  D AIR+   ++  +LI R L   H    AAP YL     P    +L  
Sbjct: 128 NNKVINLIEERIDLAIRITNNLE-PNLIARPLSICHSVVCAAPSYLDRKIIPQKPTDLAS 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                       P    L  N    +M+  + G+GI + P Y 
Sbjct: 187 HNCLTYNFFGKSLW----LFEKQHEQYSVPVSGTLSANESTVLMEAALQGAGITMQPYYS 242

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDWK 298
              +     LV ++ D    +  +Y  Y         L+A  +F+   F  A  W+
Sbjct: 243 AAPHLISGQLVELLPDYQPQAMGIYGIYTSRQNMPVTLRALLDFLVGWFANAPHWQ 298


>gi|304410838|ref|ZP_07392455.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307304991|ref|ZP_07584741.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304350735|gb|EFM15136.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306912393|gb|EFN42817.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 313

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 138/299 (46%), Gaps = 8/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L ++++++SR+I+ LE + G +L +R  R L LTE 
Sbjct: 1   MDLNRVQIFAQVVEQGSFTGAAKALGITKATVSRKIAELEADTGTQLLFRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   +++   L++ + +L        G L+I   I+LGQ  L     +FL LYPDI
Sbjct: 61  GSSYYNRINKILTDLQSAENQLSAQQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++      + L    LV  H    A+P YL     P  
Sbjct: 121 TIEAELTNRKVDVIEEGIDLLFQIADSG-DTRLQSYALVNAHKSLMASPAYLAEHGTPKV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L KH  I    L    +E    L      I    ++ L VN+     +  + G GI 
Sbjct: 180 PQDLAKHKAI---RLQSAHIEGAWKLFDGKTWIVAEPMTQLTVNNVTLAREAAIAGLGIT 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDW 297
            +P  I +   +   L+ +++D       V   YP+      K + F  FI+    + W
Sbjct: 237 AVPSIIAQVALEKGYLIPLLDDYPMVQTKVVLSYPQRAYLPRKYRVFIEFIYSALFKRW 295


>gi|262173122|ref|ZP_06040799.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
 gi|261890480|gb|EEY36467.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
          Length = 314

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 130/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE
Sbjct: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F+  YP+
Sbjct: 61  SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFIEQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  SSLI RKL        A+P YL     P 
Sbjct: 121 VVPYLYLNDNISNLAESGLDVVIRYGE-LADSSLISRKLAPSRRVLCASPAYLARKGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W    +       +      +    I Q+ + G G
Sbjct: 180 TPQDLAQHDCLA---MVRSNEEMKTWYFQDNEQHKVITVVPKSFADDGEVIRQWALAGMG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+++     LV ++   +             +   Y        +L+ F +F
Sbjct: 237 IALKSILDVQEDLNQKRLVTVLNGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LIEQ 300


>gi|237798901|ref|ZP_04587362.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021755|gb|EGI01812.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 306

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 139/295 (47%), Gaps = 5/295 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA +G FT AAE+L+L+ S++S+ ++ LE+ +G++LF R  R LTLTE+G+
Sbjct: 11  LKGIETFVAVANAGGFTAAAERLNLTNSAVSKSVARLESRLGMRLFERTTRRLTLTEEGA 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H V   +  +LE  +  L    ++P+G+LRI      G+      +  F   +  ++ 
Sbjct: 71  AYHVVCMRMLAELEAAETALAAQRMEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRP 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   ++ +DI  +  D A+R+  P +  + L  R L T  +   AAP YL     P + 
Sbjct: 131 RVTFTDRFVDILEEGIDLAVRIGGPQVWPAGLAHRYLGTERVIFCAAPAYLHRHGTPETF 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  I FG         + ++    +       + L + +  + +       GIA 
Sbjct: 191 EDLARHACILFGRG-DGSTSPWLFVDEQGQQETRAVEARLVIGNGEAQVAAVTSAWGIAQ 249

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L  +++K+      LV I+  + T    ++  +P   ++  K++A    +    R
Sbjct: 250 LATWLIKEQLQRGELVEILPQLATQGLDLHLAWPRNRESLPKVQALVELLSDALR 304


>gi|152972165|ref|YP_001337311.1| putative DNA-binding transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|329997570|ref|ZP_08302842.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150957014|gb|ABR79044.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328538989|gb|EGF65039.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 303

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R L LTE G   +
Sbjct: 1   MSVFAKVVELGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSLGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  + +    +L   +  P G LRI  +  + QN+L     + L  YP + + L+
Sbjct: 61  QGCRRMLFEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLARITAKMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L ++ M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGSMPMVLCAAKSYLAQAGNPEKPADLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
            H  + +     +   +F  +A                N  ++++++   G GIA +P  
Sbjct: 180 GHAWLEYSV---RPDNEFVIIAPEGISTRLTPQGRFVTNDPMTLVRWLTAGVGIAYVPLM 236

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + +++     L  ++    +    VY  Y E  K   K++   N++  
Sbjct: 237 WAIEEINRGELEILLPSYQSDPRPVYALYTEKDKLPLKVQVCINYLTE 284


>gi|226945309|ref|YP_002800382.1| transcriptional regulator LysR family protein [Azotobacter
           vinelandii DJ]
 gi|226720236|gb|ACO79407.1| Transcriptional regulator LysR family protein [Azotobacter
           vinelandii DJ]
          Length = 300

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 126/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ L  F  VAR  SFT AA QL +SQ+++S  I  +ET +G++L  R  R ++ TE G
Sbjct: 5   SYNDLLAFIAVARERSFTRAAAQLGVSQAALSYTIRTMETRMGVRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +     + ++E   + + E   KP+G LRI  + +  + +L   L + L  +P I 
Sbjct: 65  ERLLQSIVPHFQEIEAELMAVGELRDKPAGTLRITASENAAETVLWPRLAKLLPKHPLIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ ++++ +DI  +  D  IRL   +       R    + +    +P YL     P   
Sbjct: 125 VEVTVESRFVDIVAERYDMGIRLGDELARDMTAVRISPDMRVAIVGSPGYLAKHPAPRKP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I    +    +  + W     +     R+   L  N    I+   + G G+ 
Sbjct: 185 QDLADHVCINLRLMSHGDL--YAWELKKGKQQVNVRVEGRLVFNGTRPILHAALAGFGLG 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+ + +       L R++ED        +  YP     +  +      +
Sbjct: 243 YLPEDMAQPYIAKGRLERVLEDWSPAFPGYHLYYPSRRYPSRAMAVLIEAL 293


>gi|295096258|emb|CBK85348.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 301

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 3   DLNDFVWFVKVVEHGGFAAAGRALDQPKSKLSRRIAQLEERLGVRLIQRTTRQFAVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +  + E  +  +     +P G +R+   + L    +   L  F+  YP I 
Sbjct: 63  QTFYQHCKAMLVEAEAAEEAVAALQAEPRGMVRLTCPVTLLHVHVGPMLARFMARYPGIN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R +P   S L+ R L        A P  ++    P  
Sbjct: 123 LQLEATNRRVDLVAEGVDVAIRVRPRPFDDSDLVLRVLADRGHCLVAGPALIERMGNPAM 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +   ++ G    K +  +                 L     L++ +  + G G+ 
Sbjct: 183 PSELSEWPGLSMG--AGKHLHKWELSGPEGAKAEIHFTPRLVTTDMLALREAAMAGVGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +VKD   +  LVR++         ++  YP        ++   +F+  +
Sbjct: 241 QLPILMVKDQLASGELVRVLNAWEPRREVIHAVYPSRRGLLPSVRTLVDFLTEE 294


>gi|260466799|ref|ZP_05812984.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029411|gb|EEW30702.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 300

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 130/294 (44%), Gaps = 11/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +GSF+ AA  L ++ S++S+ I+ LE  +G +L  R  R L LT +GS  
Sbjct: 11  EIEVFVRVVEAGSFSAAARNLRMTPSAVSKLIARLEARLGARLVSRSTRKLQLTPEGSAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   +   + E    +     +LR+ T +  G + L   L  FL  YP+I + L
Sbjct: 71  YESGLRILADMAAAEREAAAGAAPRG-RLRVNTYVPFGVHRLIPLLPRFLERYPEISVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  ID+  + AD AIR  + +  S L+ RKL    M   AAP YL     P    EL
Sbjct: 130 VLTDSVIDLMAERADVAIRAGQ-LGESRLVARKLGQSPMVVVAAPSYLGAHGTPRLPAEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D+HN + FG           W          P      V+   ++    + G+GIA L  
Sbjct: 189 DRHNRLAFGF----ARYSDGWPFADGTSFTVPVSGNAMVSDGEAMRLMTIAGAGIARLAR 244

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V+ +     L+ ++ED         +  Y         +++AF +F+    R
Sbjct: 245 WHVEPDIATGRLMPLLEDFNPGDVEPTHAVYVGHGKHLPARVRAFLDFLVETVR 298


>gi|260596139|ref|YP_003208710.1| transcriptional regulator [Cronobacter turicensis z3032]
 gi|260215316|emb|CBA27276.1| HTH-type transcriptional activator aaeR [Cronobacter turicensis
           z3032]
          Length = 315

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 129/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 5   LKRMSVFAKVVELGSFTSAARQLEMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L       L  YP + +
Sbjct: 65  IYYQGCRRMLHEVQEVHEQLYAFNNSPIGTLRIGCSSTMAQNVLASLTAGMLRDYPGLSV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L ++ M   AA  YL     P    
Sbjct: 125 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGSMPMVVCAAKSYLAQAGTPEKPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  +++ ++   G+GIA +
Sbjct: 184 DLANHSWLEYSV---RPDNEFELIAPEGISTRLLPQGRFVTNDPMTLSRWLKAGAGIAYV 240

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +++ +  +  L  +     +    VY  Y E  K   K++   N +
Sbjct: 241 PLMWVIDEINSGELEILFPRYQSDPRPVYALYTEKDKLPLKVQVCINAL 289


>gi|221200768|ref|ZP_03573809.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
 gi|221206964|ref|ZP_03579975.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221173038|gb|EEE05474.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221179340|gb|EEE11746.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
          Length = 310

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 131/296 (44%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L  F  +A   SF  AA  L +S S++S  +  LE ++ ++LF R  R + LTE G 
Sbjct: 6   LSELTAFIAIAEQQSFRAAARVLGISPSALSHAMRSLEAKLSVRLFNRTTRSVALTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R        LE    E   +  +PSG ++I+T+      L++  L EFL  YPDI++
Sbjct: 66  QLLRRVRPAVADLEDAINEAASARNRPSGTIKISTSEAAALPLVRQVLPEFLDRYPDIRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + ++D++ +DI  +  D  IRL   +    +  R    + + A A+P YL+    P    
Sbjct: 126 EFVVDSRFLDIVANGFDAGIRLHDDVPRDMIAVRFQPDMVLAAVASPGYLQRHDAPKEPH 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H  I F       +E    +    +         L + ++  +++  + G GIA L
Sbjct: 186 ELTQHRCIRFRFESGALLEWE--MIRRGKNAHVAVDGSLTLGNWNLVVEAALAGIGIAWL 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P   V ++     LV ++ +       +   YP        L+ F +      R+W
Sbjct: 244 PVSHVSEHLTAGRLVHLLPEWSPSFPGLCLYYPANRHLPTALRLFAD----TVRNW 295


>gi|307729898|ref|YP_003907122.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584433|gb|ADN57831.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 294

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 132/289 (45%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS T AAE+  +S + + + I  LE+ +G +L  R  R  +LTE G + +
Sbjct: 7   MEIFVAVVEAGSLTAAAERFEISSAMVGKHIRSLESRLGTRLLTRTTRRQSLTEIGRQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L++   +  G  +    + ++L  +P++ ++L 
Sbjct: 67  EQCRRILADVKDAESLAEAMAAAPRGVLKVTVPLTYGVEVFSPAMIDYLSAWPEVTLELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+  D+  +  D A+R+   +  SS + R L    M A A+P YL     P +  +L 
Sbjct: 127 LSNRITDLVEEGFDAAVRIGH-LADSSFVARPLKPYRMRACASPAYLARAGIPRTPADLV 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F   +P   E    L          R    + N+  ++    + G G+ L P+ 
Sbjct: 186 HHECLGF---LPWGREGTWRLGGEGAAQSPLRAGRFRANNGQALKVAALRGFGLVLQPEA 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++    ++  LV ++ED +     V+  YP   + T KL +F +F+  +
Sbjct: 243 LLAREIESGELVPVLEDHLPQGAPVHLVYPRDRRATPKLTSFIDFVMER 291


>gi|120611202|ref|YP_970880.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120589666|gb|ABM33106.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 340

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 66/305 (21%), Positives = 126/305 (41%), Gaps = 17/305 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F  +  SGS + AA QL  +Q ++SR++  LE  +G++L  R   G+ LTE G 
Sbjct: 14  IELLQTFVRIVDSGSLSAAARQLGTTQPTVSRRLQALERGMGLRLLQRSTHGMKLTEDGE 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+  + +  + +L+ +   P G LR+      GQ+ L   L  FL  YP++ +
Sbjct: 74  RCFAHARELLAQWQAMESDLRGAHDTPRGLLRVQAPHAFGQDQLIAPLAAFLRRYPEVSV 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-REPLSI 183
           + +L ++  D   +  DCAI++  P++  S++   +  +     A+P  L+     P   
Sbjct: 134 EWLLHDRQPDFIAEGIDCAIQVG-PVRDPSVVATHVAEVPRIVVASPGLLEAHGGAPPHP 192

Query: 184 QELDKHNLITFGDLIPKCMEDF------------NWLATVDRPIGEPRISCLQVNSYLSI 231
           Q+L     +       + +E                      P        +  +S  ++
Sbjct: 193 QDLGALPWLALRTYYLREVELHPEEGLATAPAAAAKPDATAGPQAIAIRPRMATDSLHAL 252

Query: 232 MQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
               + G G AL+  + V+D+     LV ++         V+  YP       +L+ F  
Sbjct: 253 RNAALSGLGAALVSAWAVQDDLRSGRLVHVVPGWRAQPLPVHLVYPPTRHPPARLRVFLE 312

Query: 289 FIFLK 293
            +   
Sbjct: 313 AMREA 317


>gi|126172731|ref|YP_001048880.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|153002350|ref|YP_001368031.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|160877074|ref|YP_001556390.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|217974937|ref|YP_002359688.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|125995936|gb|ABN60011.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
 gi|151366968|gb|ABS09968.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
 gi|160862596|gb|ABX51130.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|217500072|gb|ACK48265.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
 gi|315269278|gb|ADT96131.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 314

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 138/299 (46%), Gaps = 8/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L ++++++SR+I+ LE + G +L +R  R L LTE 
Sbjct: 2   MDLNRVQIFAQVVEQGSFTGAAKALGITKATVSRKIAELEADTGTQLLFRTTRALKLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   +++   L++ + +L        G L+I   I+LGQ  L     +FL LYPDI
Sbjct: 62  GSSYYNRINKILTDLQSAENQLSAQQQLIKGNLKIVCPIELGQLFLGPIFAQFLTLYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++      + L    LV  H    A+P YL     P  
Sbjct: 122 TIEAELTNRKVDVIEEGIDLLFQIADSG-DTRLQSYALVNAHKSLMASPAYLAEHGTPKV 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L KH  I    L    +E    L      I    ++ L VN+     +  + G GI 
Sbjct: 181 PQDLAKHKAI---RLQSAHIEGAWKLFDGKTWIVAEPMTQLTVNNVTLAREAAIAGLGIT 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDW 297
            +P  I +   +   L+ +++D       V   YP+      K + F  FI+    + W
Sbjct: 238 AVPSIIAQVALEKGYLIPLLDDYPMVQTKVVLSYPQRAYLPRKYRVFIEFIYSALFKRW 296


>gi|294146718|ref|YP_003559384.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292677135|dbj|BAI98652.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 311

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 15/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS +WD +  F  VA +GSFT  A  L +S + +SR I  LE  V   LF+R  R + LT
Sbjct: 1   MS-NWDGIDEFISVATAGSFTRGARALGVSTTHVSRSIMALEQRVQALLFHRTTRTVRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G         +    +     + E   +P G+LR+  +  +G+  +   ++ F + +P
Sbjct: 60  DTGRVFFERCERIAKDRDEAIALIGER-SEPQGELRVTCSTAMGERFVAPIIRRFAMQHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + + L N+ ID+  +  D A+R    +    LI  ++ +  ++  AAP YL +   P
Sbjct: 119 KLAVSIELSNRVIDLVGEGFDVAVRTG-TVNDPRLIATRVASRTLYTCAAPSYLASAGRP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            S++ L  H  I              W   VD      R     + NS  ++M+ C+ G 
Sbjct: 178 ASVEALAGHECI--------AGSASTWHFKVDGQEVIHRPKGRFRCNSGHAVMEACISGL 229

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  LPD+ +     +  +  ++EDV      ++  YP+      K++   + +  + 
Sbjct: 230 GICQLPDFYILPYLKHGMVELLLEDVQPDDEPIWAVYPQRRHLLPKVRQVVDCLLREL 287


>gi|254437458|ref|ZP_05050952.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198252904|gb|EDY77218.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 310

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 132/289 (45%), Gaps = 6/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D++  F  +  +G+ T A+ +  L+ S++SR++  LE  +G  L +R  R  +L+ +G 
Sbjct: 4   LDEIETFVAIVDAGTLTEASRRSGLALSAVSRRLRDLEARMGTTLIHRSTRTFSLSSEGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   L+  + +L+++  + +G++RIA  +      L   L EF+ L+P+++I
Sbjct: 64  DFYLRCKQILSDLQEAETDLRDTKGRITGRIRIAAPLTFSVLHLSPILNEFMTLHPEVEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L ++++ +D+  +  D AIR+ + +  SS + ++L  I      AP  ++   +P   +
Sbjct: 124 DLDVNDRQVDLVAEGFDLAIRIGR-LSDSSFLAKRLTRIRHVPTVAPSLIERLGQPERPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +T+    P    ++ ++    R         L  N+   +    + G G+A  
Sbjct: 183 DLTDFPALTYRSSGPGT--EWRFVRPDGRKGSVTVKGTLACNNGDVLRSAAIAGLGVAFE 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I      +  L  +  D        Y  +P     T +++A    I
Sbjct: 241 PTFICGPAILDGLLTPLFFDHTWSENAAYAVFPPGRAQTARVRALIEHI 289


>gi|262173829|ref|ZP_06041506.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|261891187|gb|EEY37174.1| transcriptional regulator [Vibrio mimicus MB-451]
          Length = 310

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G 
Sbjct: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRNIRLTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T      L+    ++  +  + +G+L I+   DLG+NLL   ++EF+ L+P++ +
Sbjct: 64  IFLAKTQSAIATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIEEFIALHPNVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+  +  D AIR  KP   S+L+   L         A+P YL      L  
Sbjct: 124 KLELSDSLTDMYTNPVDIAIRYGKP-ADSNLVAILLCDSNERVLCASPDYLATHPPILHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + +  ++   + +   L+                N    + +  V G GIA 
Sbjct: 183 DDLLHHNCLCY--MVSDTLHNKWILSRDGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +     +  LVRI+ +  +    +Y    +    T  ++AF+ +I  K
Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYLVCADRRLITPTIRAFQEYIRGK 293


>gi|206559025|ref|YP_002229785.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035062|emb|CAR50935.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 320

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + + 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +L
Sbjct: 127 LSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPEYLEKRGTPQTIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +                A   R         L VN    +    + G+GIALL  
Sbjct: 187 ANHNYLRRDSNSTMLDSLVIDAAAASRVSLN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIESGRLVPVLLDSVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|330954227|gb|EGH54487.1| LysR family transcriptional regulator [Pseudomonas syringae Cit 7]
          Length = 298

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 140/301 (46%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+VF  V  SGS + AAE++  + S +SR +S LE ++   L  R  R + LT
Sbjct: 1   MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +  ++E+ +  L  S   P+G+LRI        + +  ++ EF   YP
Sbjct: 61  EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHSIVPHVAEFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D+  ID+     D AIR+   +  S+L  R L +  ++  A+P YL+    P
Sbjct: 121 HIELELNSDDWFIDLLEQSTDIAIRIGA-LSDSTLHARSLGSCLLNIVASPAYLQRHGSP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + +EL +H L+ F  +         W          P    +  +S  ++    + G G
Sbjct: 180 KTAEELAQHVLLGFTHVEVLN----QWPLRHAGGDRLPIKPSISASSGDTLRHLVLEGVG 235

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L D++  D+     +V ++++  +     ++  Y    +   +++ F +F+  K  D
Sbjct: 236 IACLSDFMTCDDLREERMVCLLKEANSGYRQPIHAVYYRNSRLALRIQCFLDFMQEKLED 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|16761686|ref|NP_457303.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143170|ref|NP_806512.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|25319788|pir||AC0854 probable LysR-family transcription regulator STY3037 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503987|emb|CAD06018.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138803|gb|AAO70372.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 310

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 9   LNLQRMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 69  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDL 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 129 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARHPVS-S 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 187 LESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 246

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 247 LLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 300


>gi|251791692|ref|YP_003006413.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247540313|gb|ACT08934.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 296

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 130/288 (45%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  SGSF+ A+ +L + Q +IS+ I  LE ++ +KL  R  RGLT TE G + +
Sbjct: 7   LETFVCVYESGSFSAASRRLGIGQPAISKAIMQLEQQLAVKLLLRSTRGLTPTEAGQRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +    +L   Q E++  + + SG LR++  +   +  +  +L  F+  +P +++  I
Sbjct: 67  GQVAPALQQLHDAQDEVRGGNGELSGYLRVSAPVTFARLHVLPHLHVFMSQHPQLKVDTI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  +  D A+RL   ++ S L  RK+ +  M   A P Y      P S + L+
Sbjct: 127 LDDRPVDLIAEGIDVALRLGD-LKDSGLTARKMGSAPMRLLATPAYFAAHGLPASPEALE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +          F      DR         ++  +   + +  + G+G+ +   +
Sbjct: 186 NHDAVLYLQADTPGNWRFR---RDDRQCQVTLSGRIRTTAAEGVREAVLAGNGLTVASAW 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +      +  +V  + D       ++  YP     + + +AF  F+  
Sbjct: 243 MFAPELASGVVVTALTDWHIGVMDLWAVYPGGRLTSARARAFTEFVVQ 290


>gi|16119467|ref|NP_396173.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15162007|gb|AAK90614.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 313

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 128/291 (43%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D      F  VA   SF  AA++L+++ S+IS  I  LE  + ++LF R  R ++LTE G
Sbjct: 12  DLAAFSAFLAVATHRSFRSAADELNMTPSAISHSIKVLEERLNVRLFNRTTRSVSLTEAG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          +E    EL+ +   PSG +RI  +    + +L+  L  FL  YP + 
Sbjct: 72  ERLASKLKPAMASIEEAVQELEGNGPVPSGTVRINASEGAIRLVLRPVLAPFLREYPQVH 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++ D +  DI  D  D  IRL + +    +    +  +   A A+P Y +    PL  
Sbjct: 132 LDIVSDGRLSDIVADGFDAGIRLAEAVPKDMVAIPVMGEVRFAAVASPEYFERRGYPLIP 191

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I F     +    + W            +S  L ++    +++  + G GIA
Sbjct: 192 QDLHSHDCIRFRF---ESGAIYRWEFERMGASERINVSGPLTLSDQPLMVEAAIDGIGIA 248

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +PD++     ++  L R++ED       +   Y      +  L+A  N +
Sbjct: 249 FVPDHLATEALEHGRLERVLEDWCPALPGLCLYYSGRRHVSSGLRALINML 299


>gi|70732520|ref|YP_262283.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346819|gb|AAY94425.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 300

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 138/296 (46%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++  F  V   G  + AA    ++ SS+S+ ++ LE  +G++L  R  R L LT +G 
Sbjct: 9   FAEMETFVAVVECGGLSAAARLRQVTPSSVSKLLARLEARLGVRLLNRSTRQLQLTAEGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  +  +   L   + E   +   P G++R+ T+   G ++L   + EFL LYP + +
Sbjct: 69  GFYENSVRLLADLREVEGEASSARA-PVGRVRVNTSASFGLHVLAPLVAEFLQLYPQVSL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+  +  +D+  +  D AIR   P+  S LI RKL         +P YL  C  P + +
Sbjct: 128 DLVHSDALVDLLGEQTDVAIRTG-PLADSQLIARKLGETRGVVVGSPAYLARCGVPQTPE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+L+ F     + +  +   A  +  + +P    +Q +   ++    + G+G+A L
Sbjct: 187 DLAAHHLLGFD--YARALPGWRLGAAGESQLLQPN-GRVQASDGEALRHLALHGAGLAQL 243

Query: 245 PDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
             + + D+     LV ++E     P  + Y  Y  +      +++ F +F+ L+ R
Sbjct: 244 AAFTIADDLASGRLVPVLEAFNQAPLESFYALYVGQGGHVPSRVRVFIDFLALRVR 299


>gi|70729151|ref|YP_258887.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343450|gb|AAY91056.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 322

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/303 (22%), Positives = 132/303 (43%), Gaps = 15/303 (4%)

Query: 1   MSFDW-----DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           MS +       ++ +F  V  +GSF+ AA QL  S S++SR IS LE  +  +L  R  R
Sbjct: 6   MSINLPLPLLAEMAIFVRVVETGSFSEAARQLGSSPSAVSRSISRLEKALATRLLQRTTR 65

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            L L++ G ++ +  SE+     +      + + +  G +R++    +G+ ++  ++ EF
Sbjct: 66  KLRLSDGGEEVFKRCSEMVSAARSVMEVSGQFTHEAEGVVRVSVPKAVGRFVVHPHMPEF 125

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           L  YP + ++L+ +++D+D+  D  D AIR+        LI R+L+ I     A P YL 
Sbjct: 126 LRRYPQVDVELLHEDRDVDLIDDNVDLAIRITDR-PPPGLIGRQLLRIDHLLCATPQYLA 184

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P   Q+L +H+ I  G+        F       + +          N     +   
Sbjct: 185 EHGTPAHPQDLRQHSCIYLGETPSDARWKFT---QGSKAVTVGVRGRYAANHTGVRLDAV 241

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNF 289
           +   GI  LP +  +   +   +V+++ +    +      +  +        KL+ F ++
Sbjct: 242 LQHLGIGSLPYFTARHALEQGLIVQVLPEWTFLASYHGGAWLLHSPTRYLPPKLRVFIDY 301

Query: 290 IFL 292
           +  
Sbjct: 302 LVE 304


>gi|170691973|ref|ZP_02883137.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143257|gb|EDT11421.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 305

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 137/298 (45%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ + +F  V  + SFT  +E L L ++ +SR I  LE  VG++L  R  R +++TE
Sbjct: 1   MDRFEAMEIFTRVVEANSFTKVSESLDLPRAKVSRTIQALEEHVGVRLLNRSTRQVSVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  ++   +  L      P G +R+ T+  L + LL   L +F   YP+
Sbjct: 61  DGALFYDRCVRILAEVADAESSLSNKRENPVGTIRVDTSGTLARALLLPALDDFYRRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L +++ID+  D  DC IR+  P + SSL+ R++    +   A+P YL+    P 
Sbjct: 121 IDVRLGLADRNIDLIQDAVDCVIRMGTP-EESSLVARRIGHARIVTCASPAYLEKYGTPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H  + +          F +       +     S L VN     ++   LG GI
Sbjct: 180 TLDQLSEHRAVNYVSARTGKTFPFEYEVN-GETVKVAMKSVLAVNDGSVYIRAGELGHGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                ++V    +   L  I+ D  +P   +   Y      + +L+AF  ++    R+
Sbjct: 239 IQPSRFMVAHLIERGVLKEILTDYTSPGTPLSILYAHRRNLSSRLRAFTEWVTELVRN 296


>gi|28901542|ref|NP_801197.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308094877|ref|ZP_05892735.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308095078|ref|ZP_05903243.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308125488|ref|ZP_05775963.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|28810089|dbj|BAC63030.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308089493|gb|EFO39188.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308091979|gb|EFO41674.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308111959|gb|EFO49499.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 318

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 120/298 (40%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R + LTE
Sbjct: 1   MDKIRSLRFFIATLEGGSFAAAAKAYGTDPSTVSKAIHRLESDLGIQLFQRSTRQIRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +       V  +L   +  L+  +   SG L+I   +  G+  ++  LKEF   YP 
Sbjct: 61  AVRRYANTARFVLDELAACEDSLKSHNDALSGLLKINVPVSYGRLYIRPLLKEFCRRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I +  D+  +DI     D +IR    +Q S LI R+L  I      +  YL     P 
Sbjct: 121 ITIDIHYDDAYVDIIEQGIDVSIR-SGVVQDSQLIVRQLSPIDFIICGSQDYLTRHGVPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                + H+ + F       +               P  +   VN   S+ + C  G G+
Sbjct: 180 GPDAFNDHSWVRFRFKQTGKLLPIRMPEPDGTSEYNPERN-FIVNDGESMAELCAEGLGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +P +I +D      LV I   +      VY  Y        +++ F +FI    +D
Sbjct: 239 TQIPHFIARDWLKVGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFITQAIQD 296


>gi|300703603|ref|YP_003745205.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299071266|emb|CBJ42584.1| putative transcriptional regulator, LysR family precursor
           [Ralstonia solanacearum CFBP2957]
          Length = 336

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 9/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + VF     +G F  AAE+L LS+S++ + I+ LET +G++LF+R  R   LTE G 
Sbjct: 9   LDGVAVFVEAVEAGGFARAAERLALSRSAVGKSIARLETRLGVRLFHRTTRTQNLTEDGQ 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        +L   +  L+    + +G+LR+   +  G+  +   L +F   +P +++
Sbjct: 69  IYYERCLRAIEELRVAESLLESGKQEVAGRLRMTMPVLFGRYCIAPILLDFARQHPKLEL 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +D+  +  D  IR     +++ L  R L T      AAP YLK   EP +I+
Sbjct: 129 ELSFSDRPVDMIAEGFDLGIRSGALGEATGLCARPLATQPKVLCAAPDYLKARGEPDTIE 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            L  H+++       +    + WL      R       S L+ +         V G GIA
Sbjct: 189 TLATHDVLIH----WRTGHPYPWLLPGADGRLTDVRLASRLRFDDLEVTADAAVAGMGIA 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LP ++V+D      LV + E+    S   +  +P       +++   + +  K 
Sbjct: 245 WLPRWLVRDRIQAGALVALWENRPAASMDSHAIWPATDYMPLRVRLAIDTLVEKL 299


>gi|15829563|ref|NP_308336.1| transcriptional regulator [Escherichia coli O157:H7 str. Sakai]
 gi|13359766|dbj|BAB33732.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           Sakai]
          Length = 300

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 12  NYNELYLFMQVVREGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDIQ
Sbjct: 72  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIQ 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 132 LELINESRFVDIIEERFDAGVRLGPEVSQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 191

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +        +    L   D+ I          +      +   LG G+A 
Sbjct: 192 ADLKAHPCIAYQFADGSVYQWE--LNQDDKKITHQPEGQWAFSDSYMEAEAARLGLGLAY 249

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  +V D+     L+R+++        ++  YP     +  L+   +
Sbjct: 250 VPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYPH-RNVSPALRMVID 296


>gi|218703579|ref|YP_002411098.1| putative LysR-like transcriptional regulator [Escherichia coli
           UMN026]
 gi|293403416|ref|ZP_06647507.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298379027|ref|ZP_06988908.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|218430676|emb|CAR11548.1| putative LysR-like transcriptional regulator [Escherichia coli
           UMN026]
 gi|291429269|gb|EFF02289.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298280140|gb|EFI21644.1| transcriptional regulator [Escherichia coli FVEC1302]
          Length = 329

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 145/302 (48%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 23  MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 82

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 83  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 142

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 143 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAIPVSPLIKLVTVASPDYLKE 201

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +  +A  +             N   S+++ 
Sbjct: 202 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEFEIEVSGKYISNDDESMIRM 261

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 262 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 321

Query: 292 LK 293
            K
Sbjct: 322 EK 323


>gi|323968566|gb|EGB63972.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|327252920|gb|EGE64574.1| hypothetical protein ECSTEC7V_2165 [Escherichia coli STEC_7v]
          Length = 307

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQYGTPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLVIKERDHPFGIW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|270261789|ref|ZP_06190062.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270045273|gb|EFA18364.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 295

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 144/294 (48%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F   A + SF  A   L +S S+I + I+ LET + ++LF+R  R +TLT +G
Sbjct: 3   NLAGVSAFVQAAETLSFVEAGRVLGVSASAIGKSIARLETRLAVRLFHRSTRSMTLTAEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +    +  ++   + EL ++   P GKLR++    L  +LL   L EF+  YP I+
Sbjct: 63  TLFLQRCQRILGEMAAAEQELSDTRSAPRGKLRVSLP--LVGSLLNPVLAEFIRQYPQIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +++  +  D  IR+ +  + S L+ R+L T H+   AAP YL+    P   
Sbjct: 121 LEVDFSDRRVEVIEEGFDAVIRVGE-TEDSRLMSRQLGTFHLQLVAAPGYLRQAGIPQQP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  + +       +E +  +A  D+ +G+   + +  NS  +++     G GIA 
Sbjct: 180 ADLRQHACLLYKFPTTGKVESWP-VADWDKILGDGLRTSVVCNSVDTLIYLAEQGQGIAC 238

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPD+ VK       L +++ +    + +    +P +     +L+ F + +  + 
Sbjct: 239 LPDFAVKQALAGQGLQQVLGEHSHHTGSFKILWPSSKHLAPRLRVFIDLLSERL 292


>gi|271502124|ref|YP_003335150.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270345679|gb|ACZ78444.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 298

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 138/292 (47%), Gaps = 10/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F +VA  GSFT AA Q  +++SS+S ++S LE  +G++LF R  R L LT
Sbjct: 1   MFRQLQDMALFALVAECGSFTEAARQAGMAKSSLSLRVSQLEQSLGLRLFNRTTRKLNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +      E+    E  ++ +Q    KPSG+LRI +   LG  LL     EF   +P
Sbjct: 61  FAGERYLVHCQEMRQASERAEMAMQHLRDKPSGRLRITSPAGLGATLLARLTVEFQSRFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +++++ ++ ID+  +  D A+R  KP Q SSLI R L  +  +  A+  YL      
Sbjct: 121 AVSLEIVVADRVIDLVEEGFDAALRTGKP-QDSSLIGRSLGQVPHYLVASYAYLAALPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL  H  I       +   ++ +    +  +     S +  ++ L      +   G
Sbjct: 180 THPRELQAHRCIAH-----RAWPEWGFRREAEYFLWRLPQSHI-TDNLLYARACVLADGG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I LLP ++ +   D+  LV ++ +    +  +Y  YP    N+  L +F +F
Sbjct: 234 ITLLPAFLCREQIDSGELVCLLSEWQADTNDLYLIYPGRKLNSPALNSFIDF 285


>gi|186470559|ref|YP_001861877.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196868|gb|ACC74831.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 318

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 132/289 (45%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L++F  VAR  SF  A+ ++ +S S +S++I+ LE  +G+KLF R  R +++T  G 
Sbjct: 15  LRDLQLFCTVARRASFVTASAEMGISPSHVSKRIALLEKSLGVKLFMRTTRRVSVTSDGE 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   ++   ++            P G LRI+T++ LG+  +   L      YP ++I
Sbjct: 75  AAFQWAQKILDDVQGMADAFAGLKSDPRGVLRISTSLRLGREHVSPILSLLRKRYPGLEI 134

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  D  IR+   IQ   LI  K+V       A+P YLK    P ++ 
Sbjct: 135 WLELLDRRVDLVGEGFDIDIRVGN-IQEPHLIAHKIVGSARILCASPEYLKRAGTPRTLA 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + F +   +       L   D          +  N    + Q+ + G GI ++
Sbjct: 194 DLAQHDCLLFRERDQRFGAWR--LTGPDGEKSVKVTGPIASNHSDIVQQWALDGDGIIMV 251

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V    ++  LVR++     P+  V+        ++ KL+   +F+
Sbjct: 252 SVWDVASSLESGALVRVLPQHHQPA-DVWAVTSARASSSAKLRVCVDFL 299


>gi|241207306|ref|YP_002978402.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861196|gb|ACS58863.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 301

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 133/289 (46%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +  F  V   GS + AA +L LS+S +S +++ LE  +G  L +R  R LTLTE G+
Sbjct: 4   IEGIAAFVAVVEVGSVSEAARRLRLSKSVVSERLAELEKSLGGVLLHRTTRKLTLTEDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 + +  ++E    ++ E     SG +RIA  +  G+  L   L  FL  +P+I++
Sbjct: 64  VFLGRAARIVSEIEEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLAEHPEIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +D++ +D + D  D  IR   PI  S L+  KL        A+P YL     P S+ 
Sbjct: 124 TLDIDDRRVDAASDGYDAIIRNG-PIADSRLVAWKLTRSRRLLCASPDYLARQGIPSSLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD H  I + +   + + D+    T D  I       L +N+   +    + G GIALL
Sbjct: 183 DLDSHRGIFYTN---RGVADWR-FQTPDGAIVVRAKLALGINNGDMLRDAAIAGLGIALL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I         L  I       +  +Y  +PE    + KL+A  + +
Sbjct: 239 PAFIAGPAIREGRLAEIDVGHKPEAEFIYMAHPEGRNPSAKLRAIADHL 287


>gi|207722889|ref|YP_002253323.1| hypothetical protein RSMK05546 [Ralstonia solanacearum MolK2]
 gi|206588073|emb|CAQ18653.1| hypothetical protein RSMK05546 [Ralstonia solanacearum MolK2]
          Length = 297

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 139/294 (47%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  +  +     +P+G LR+   +    +++   + +F   YP
Sbjct: 61  DEGAAFLAHARGILTAVDEAEELIALRRQQPAGCLRVNAAMPFMLHVIAPLVADFRAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ ID+  +  D AIR+   ++ S+L  R+L T  +   A+P YLK    P
Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRIG-TLRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H L+ F  + P+ +  +         +    +  L+ +S  ++ Q  + G+G
Sbjct: 180 RTIEDLRHHALLGF--VQPESLNHWPLRGPHGDRLRI--VPTLKASSGETLRQLALQGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
           +  L D++   +    +LV+++ D        ++  Y    +   ++  F +F+
Sbjct: 236 LVCLADFMTAADRRAGDLVQVLPDATVEILQPIHAVYYRNTQLASRITCFLDFL 289


>gi|220924990|ref|YP_002500292.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219949597|gb|ACL59989.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 305

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 132/289 (45%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GSF+ A   L LSQ+ +++ ++ LE  +G +L +R  R LTLTE G    
Sbjct: 8   MQVFVRVAALGSFSAAGRALRLSQTGVTKHVAALEERLGTRLLHRSTRRLTLTEAGRGYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +      +V+P G LR+   +  G   +   L +F   +P ++I L 
Sbjct: 68  DACERILAEIDEAEAAAGAEAVEPRGTLRLNVPLSFGVREIAPALADFAAAHPGLRIDLG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D A+R+ + ++ SSL+ R L    +   AAP YL+    P    +L 
Sbjct: 128 LNDRTVDLIEEGWDLAVRIGR-LRDSSLVARFLAPCRLLVCAAPAYLEAHGTPRRPDDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +     +                 P    L+ ++  +++   + G G+   P +
Sbjct: 187 AHNCLGYTLASAEGWR--------FGERAYPVSGNLRASNGDALLAAAIAGQGLIYQPTF 238

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IV +   +  LV +       +  ++   P   +   K++A  +F+  +
Sbjct: 239 IVSEALRDGRLVSLDLGAAPATLPIHALMPPGRRQPAKVRACVDFLAAR 287


>gi|220919661|ref|YP_002494964.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
 gi|219952081|gb|ACL62472.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 297

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 123/293 (41%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA+ GSFT AA +L ++QS++S  ++GLE  +G++L  R  R ++ TE G
Sbjct: 5   NLTDLLSFTTVAQEGSFTRAAARLGVTQSALSHAMNGLEARLGLQLLNRSTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R+    + ++E     L E    P+G +RI       + +L   L+  L  YPDI 
Sbjct: 65  ERLLRIVGPQFEQIEVELSALTELRETPAGTVRITAPEHAAETVLWPALERLLPDYPDIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ +    +I  +  D  +R+ + ++   +  R    + +    AP Y +   +P   
Sbjct: 125 VEVVTEQSLTNIVAERFDAGVRIGEHVEKDMVAVRIGPPMRIAVVGAPAYFQGRPKPKQP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L     I            +       R +       L   S   I    + G G+A 
Sbjct: 185 EDLTAQRCINLRRPTRGGFYPWE-FGRAGRELAVRVEGQLVFTSLHLIRNAALAGLGLAY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP+  V+       LVR++ED   P    +  YP   +           +  +
Sbjct: 244 LPEDQVQAQVAEGRLVRVLEDWCEPFPGYHLYYPSRRQAAPAFTVLVEALRHR 296


>gi|50120906|ref|YP_050073.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611432|emb|CAG74880.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 309

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 125/290 (43%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L+ F  VA   SF  AA+   +++S++S  I GLE  +G++L +R  R + LTE G
Sbjct: 5   TLSDLKAFIAVADQRSFRRAADLSGVTRSTLSHAICGLEERLGVRLLHRTTRSVALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +      + LE    E+ ++  +P G LRI    +  + LL   +  +   YP + 
Sbjct: 65  EQLLQRMRPHLNGLEQALEEVADTQGQPIGSLRINGGEEAIRLLLHTVVPSYQARYPSVV 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L++D + +DI  +  D  IRL + +    +  R    +   A A+P YL     P   
Sbjct: 125 LDLVVDGRLVDIVAEGFDAGIRLAEDVPRDMVAIRFGNDMRFLAVASPAYLMKHPAPSVP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I     +P         +   + I       L +NS   ++   + G GI  
Sbjct: 185 DDLVQHQCI--RQRLPSGRRYRWEFSRHGQDIALDVPGTLTLNSSPLMVCAAIQGLGITY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P+   +   D+  LV ++E    P   +   +P        L+A  + I
Sbjct: 243 VPEVHARAALDDGRLVTVLEPWSPPIPGLCLYFPANRHMPASLRALVDMI 292


>gi|238790069|ref|ZP_04633847.1| LysR-family regulatory protein [Yersinia frederiksenii ATCC 33641]
 gi|238721882|gb|EEQ13544.1| LysR-family regulatory protein [Yersinia frederiksenii ATCC 33641]
          Length = 308

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 126/294 (42%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  +   G+F+ AAE+L L ++++S  +  LE  +G++LF R  R + +T 
Sbjct: 1   MDQIQAMRIFVRIVELGNFSRAAEKLQLPRATVSHTLKRLEHRLGVRLFVRTTRQVNITA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS  ++   ++    E          ++P GK+RI     L +N++   L +F   YP 
Sbjct: 61  EGSLYYQRCLQLLSAFEEANSLFSHQRLQPEGKVRIDMPHSLARNVVIPALSDFYQRYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L  ++  ID+  +  DC +R   P     L  R +        A+P YL     P 
Sbjct: 121 ITLILGANDTTIDLLREGVDCVLRAWLP-HDEQLTARNIGQQPQITCASPAYLAKYGIPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H  + +   +        +++   +       S L V+   + +   V G G+
Sbjct: 180 SLDDLTGHQAVGYFSQLNSRDYPLEFVSQ-GKIESRILPSILSVSGADAYIAAGVAGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P   +        L+ ++ D+  P+  ++  +P       +++   +++  
Sbjct: 239 IQAPTPGIHRQLTQGELIEVLPDMPPPTMPLFIMFPPGRFLAPRVRVLIDWLIE 292


>gi|320323639|gb|EFW79723.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328278|gb|EFW84282.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 294

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 4   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 63

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +K +L  YP   + L++
Sbjct: 64  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVKAYLQRYPGTSVDLLI 123

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P S QEL  
Sbjct: 124 GNEAVDLVSERIDLAIRITNQL-DPNVIARPLGHCDSVVCASPAYLAMHGTPASPQELAA 182

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E          P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 183 HNCLTYSYFGKSLWE----FTRQQSPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 238

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+ ++ D    +  ++  Y      +  L+   +F+  
Sbjct: 239 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFLTE 285


>gi|313500564|gb|ADR61930.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 298

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 134/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+VF  V   GS + AAEQ+  + S++SR +S LE ++G  L  R  R + LT
Sbjct: 1   MKTRSEELQVFVAVIDCGSISAAAEQMGQTPSAVSRTLSRLEGKLGTTLVNRTTRRMDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G      +  +  +++  +  L  +   P+G+LRI        + +   + EF   YP
Sbjct: 61  EEGRYFLERSRLILQQMDEMEERLSMNRQTPTGRLRINAAAPFMLHAILPWIGEFRRQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D+  ID+     D AIR+ + +  SSL  R L    +   A+P YL+    P
Sbjct: 121 GIELELNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARSLGCSPVQVLASPAYLEQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++EL  H L+ F              A  DR    P    L  +S  ++ Q  + G G
Sbjct: 180 RQVEELADHCLLGFSQPESLNHWPLRH-AQGDRWSIRP---ALVASSGETLRQLALAGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L  ++  ++     L  ++ +        ++  Y    +   +++ F +FI  K   
Sbjct: 236 IVSLSHFMTHEDIRTGRLQVLLSEANNGYRQPIHAVYYRNTQLALRIQCFLDFIQRKLAM 295

Query: 297 W 297
           +
Sbjct: 296 Y 296


>gi|262380606|ref|ZP_06073760.1| transcriptional regulator [Acinetobacter radioresistens SH164]
 gi|262298052|gb|EEY85967.1| transcriptional regulator [Acinetobacter radioresistens SH164]
          Length = 302

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 143/298 (47%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +++L+VF  +  SGS   A+EQL  S S +SR +  LE+++ + L  R  R L+LT
Sbjct: 1   MKSTFEELQVFVSIVDSGSIVKASEQLGQSTSGLSRILQRLESKLNVTLLERTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G        ++ ++L   +  L +S  + SGK+RI +      +++   +++F+  YP
Sbjct: 61  QEGQLFLERARKIINELNDAEELLLKSDHEVSGKIRIDSATPFVLHVIAPLMQKFMQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I+L   ++ ID+     D AIR  + +  SSL  R L    ++  A+P YL+    P
Sbjct: 121 YIEIELNSHDQIIDLLEHRTDVAIRFGQ-LNDSSLHARLLTQSRLYIVASPAYLEQYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL +H LI F    PK +  +      +       I   + ++  ++ Q  +L  G
Sbjct: 180 QTAGELLQHQLIGFSS--PKHLNTWPLKLGNEYFTATAPI---RASNGETVRQLALLHHG 234

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  L +++V  +     LV + ED I   +  ++  Y +      +++    ++  + 
Sbjct: 235 ITCLSEFLVGQDLAQNRLVALFEDQIELHYQPIHAVYYQQEHLPKRVRLLIEYLVQEL 292


>gi|167572573|ref|ZP_02365447.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 336

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 125/290 (43%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G
Sbjct: 3   TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 63  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRGQHPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 123 IELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 183 RDLARHACLTLRTPAFPTHEWL--LEGPNGTEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y   ++    NLVR++         VY  YP       K++ + + +
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVDAL 290


>gi|86144834|ref|ZP_01063166.1| putative transcriptional regulator, LysR family protein [Vibrio sp.
           MED222]
 gi|85837733|gb|EAQ55845.1| putative transcriptional regulator, LysR family protein [Vibrio sp.
           MED222]
          Length = 309

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/308 (23%), Positives = 130/308 (42%), Gaps = 17/308 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L LS ++++ ++  LE   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMAMFVSIVKHHGLAAAGRELGLSPATMTARLQALEERYGVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+   +   +  +Q    +  G L+IA   D+G+  +   L EF   YPD
Sbjct: 61  SGELYHKACLEILDNVSEAENLIQNGVKEVKGSLKIAAPKDIGKQYILPILSEFCQQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +I+    D  IR  + +  SSLI R+L        A+P YL     PL
Sbjct: 121 VIPYLYLNDNLSNIAESGMDIVIRYGE-LVDSSLISRRLSPSRRVLCASPEYLAKHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W     D       +     +    I  + + G G
Sbjct: 180 TPQDLVEHDCLA---MLRSNEELKTWHFQDNDMKKSVTVVPKRFSDDGEVIRYWALKGEG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+D+     LV ++   +          S  +   Y        +++ F +F
Sbjct: 237 IALKSVLDVQDDINNQRLVTLLNGYMKNFNTAMSVSSADLNVVYISKKYQPKRIRLFLDF 296

Query: 290 IFLKARDW 297
           +F +  D+
Sbjct: 297 LFERFGDY 304


>gi|53721781|ref|YP_110766.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|167741983|ref|ZP_02414757.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167819166|ref|ZP_02450846.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167827541|ref|ZP_02459012.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|254192876|ref|ZP_04899311.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254300071|ref|ZP_04967517.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52212195|emb|CAH38215.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|157810406|gb|EDO87576.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|169649630|gb|EDS82323.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
          Length = 336

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 124/290 (42%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G
Sbjct: 3   TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 63  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 123 IELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 183 RDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y   ++    NLVR++         VY  YP       K++ +   +
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEAL 290


>gi|215483208|ref|YP_002325415.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|213988332|gb|ACJ58631.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
          Length = 300

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 139/297 (46%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
             S  EL  H++++  +   + ++    L   D  + + ++S  +   +   + Q     
Sbjct: 181 IKSPDELSDHHILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYMLAQLASQN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIALLPD   +D   +  LV+I+ D        +  YP        ++ F +++  
Sbjct: 238 CGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYPSRRGLLPAVRVFIDYLVE 294


>gi|78062531|ref|YP_372439.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970416|gb|ABB11795.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 315

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 128/303 (42%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   +PD
Sbjct: 61  AGESYLRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPALTRYHAQFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P+
Sbjct: 121 VSIELSLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGAPV 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +T         E    L   +          +Q N+  S+      G GI
Sbjct: 181 RPQDLSAHACLTLCTPAFPTHEWV--LEGPEGVEQIHVTGPVQTNTAESLALAIRDGIGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----- 293
            +LP Y   D   +  LVR++   I     VY  YP       K++ +   +  +     
Sbjct: 239 GMLPLYSAIDALRDGTLVRVLPAHILQKMNVYALYPSRRFVDAKVRTWVEMLRAQVPGMI 298

Query: 294 ARD 296
           ARD
Sbjct: 299 ARD 301


>gi|49084268|gb|AAT51187.1| PA2220 [synthetic construct]
          Length = 307

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 128/290 (44%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR G+FT AA QL ++QS++S+ ISGLE  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLSFVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E    EL     KPSG +RI     + + LL   L   LL YPDI+
Sbjct: 65  ERLLNAIGNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  ++    DI  D  D  +RL   I    +       + M   AAP Y     +P S 
Sbjct: 125 VEFDINYGFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  HN I         +  ++     DR +       L  N+  +I+   + G GIA 
Sbjct: 185 RDLVDHNCINMRMQSGGGLYAWD-FQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIAR 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+       +   L+R++E+        Y  YP   + +       + +
Sbjct: 244 LPEEEFAPHIEEGRLLRVLENWCPLFPGYYLYYPNRRQPSPAFSLVVDAL 293


>gi|218553486|ref|YP_002386399.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|260854191|ref|YP_003228082.1| putative transcriptional regulator, LYSR-type [Escherichia coli
           O26:H11 str. 11368]
 gi|260867072|ref|YP_003233474.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O111:H- str. 11128]
 gi|300823639|ref|ZP_07103766.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300921066|ref|ZP_07137450.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|307311713|ref|ZP_07591353.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|331676688|ref|ZP_08377384.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|218360254|emb|CAQ97804.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|257752840|dbj|BAI24342.1| putative transcriptional regulator, LYSR-type [Escherichia coli
           O26:H11 str. 11368]
 gi|257763428|dbj|BAI34923.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O111:H- str. 11128]
 gi|300411917|gb|EFJ95227.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300523839|gb|EFK44908.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|306908268|gb|EFN38767.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|315060185|gb|ADT74512.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|320202296|gb|EFW76867.1| Putative LysR-like transcriptional regulator [Escherichia coli
           EC4100B]
 gi|323157213|gb|EFZ43336.1| hypothetical protein ECEPECA14_1004 [Escherichia coli EPECa14]
 gi|323379258|gb|ADX51526.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323947311|gb|EGB43319.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|331075377|gb|EGI46675.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
          Length = 302

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 126/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + ++  ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELEAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ D  T        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLGDWSTERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|206580580|ref|YP_002238877.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569638|gb|ACI11414.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 301

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 132/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++++  V  + SF  AAE L   +S++SR +  LE  +G +L  R  R L++T 
Sbjct: 1   MDRLDAMQLYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     +  ++   +      S +P+G+ ++     L ++ +   + EFL  YPD
Sbjct: 61  EGRRYYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI  +  DC IR  +   S++L+ R L        A+P +L     P 
Sbjct: 121 LELILCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           SI +L  H  + +  L  +     +WL ++D      R+   L V+   + +Q  + G G
Sbjct: 181 SIDDLHHHRAVGY--LNHRTGRTIDWLFSLDDGDCAIRMQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+ +    +  LV  +E        +   YP+       ++AF ++
Sbjct: 239 LIRIASYLAQPYLQSGALVACLEQ-AASDLPLSLVYPQNRYLPPAVRAFYDW 289


>gi|116249573|ref|YP_765411.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254221|emb|CAK03836.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 308

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 125/293 (42%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   + VF  VA + SF  AAE+L LS S++S+ I  +E  +G+ L  R  R ++LT
Sbjct: 1   MAIDLKLVSVFLAVAEAKSFRGAAERLGLSHSAVSQAIRRMEDRMGVALIQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L+        ++E    + Q+   +P+G LR+A +    + +    L  F   YP
Sbjct: 61  EAGMRLYERVGPAVAEVELALDDAQDRGSQPTGLLRLAVSSIAERFISGPLLASFTHAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q+ + + +++ DI  +  D  +RL + I+   +             AAP YL+    P
Sbjct: 121 GVQVDVNVTDEEFDIVAEGYDAGVRLGEVIEQDMIAVPVSGNQRQLVVAAPSYLERFGRP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL +H  I +          +       R         +  N    +++    G G
Sbjct: 181 ANPSELSRHCCIGWRPAPDVAPYRWE-FEENGREFDVAVNPRITTNDMGVMVRTACAGGG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    +   +   D   LV +MED + P    +  + +      KL+A  + +
Sbjct: 240 VTFGMEETFRPYLDRGELVSLMEDYLPPFPGFFLYFADRRNLPPKLRALVDHV 292


>gi|91224530|ref|ZP_01259792.1| probable LysR-family transcriptional regulator [Vibrio
           alginolyticus 12G01]
 gi|269968258|ref|ZP_06182284.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91190872|gb|EAS77139.1| probable LysR-family transcriptional regulator [Vibrio
           alginolyticus 12G01]
 gi|269827115|gb|EEZ81423.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 301

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 145/299 (48%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++R F  V  +GS + AAE L ++ S++SR +S LE ++   L  R  R L +T
Sbjct: 1   MKATLDEMRTFMAVVDTGSISSAAELLSMTVSAVSRSVSRLEAKLETTLLNRTTRKLDVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+        +   +E  + +L+    KPSG LRI        ++L  ++ ++  LYP
Sbjct: 61  NEGTIYLDKVRHIVEAVENAEAQLKSQKYKPSGLLRINAATPFLLHVLTPHIAKYQSLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L  + ++I +     D A R+ + +Q+S++    L    +   A+P YL+    P
Sbjct: 121 EVEIDLNSNEENISLLGTKTDIAFRIGE-LQNSTMRAIFLGKSRIRIVASPEYLRQHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI +L  H L+ F    P+ +++  W    D+      +S L+ ++  ++    + G+G
Sbjct: 180 TSIDQLLNHKLLGFNK--PEYLKE--WPIMDDKNKLLRIMSSLRSDNGETLRCLALHGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L D++    +    LV ++ +        V+  Y +    + ++ +F +FI  + +
Sbjct: 236 IACLSDFMTYSDRQAGRLVGVLSEHTHNVEQPVHAVYYKNASTSRRISSFIDFIKQEIK 294


>gi|332532112|ref|ZP_08407995.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038453|gb|EGI74897.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 307

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  +   GS T AA+QL L+++  S  +  LET++ + L  R  R +
Sbjct: 1   MKVSFEQLKSMVVFAQIVEQGSLTAAAKQLGLTRAVASYHLKKLETQLEVTLLNRSTRTM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   +     +  +      +++    +P G L+I+  +++G  L+   +  F  
Sbjct: 61  ALTEAGIAYYERCRIITEQANAANQQIENIKSEPQGLLKISCPVNVGMQLIVPAINTFKR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP IQI L L +  +DI  +  D AIR    +  S+L   KL T+      AP Y  + 
Sbjct: 121 QYPKIQIDLQLTDDVVDIIKNGFDFAIR-GVALSDSNLQATKLTTMSTCICGAPEYFAHF 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +P +  EL +H  + +  L  K +     L    +         L  N+  +   +   
Sbjct: 180 GKPKTPLELAEHQWVVY-QLGSKTLT----LQKDGKKHDITMQGGLSTNNAAARTAFVEA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI  +P Y          L  I++D  +    +Y  +P     + KL+ F +++  
Sbjct: 235 GHGIGRIPLYDAWPKVQAGLLEIILDDYKSKDIELYGVFPPGAAGSKKLRLFIDYLKA 292


>gi|222102786|ref|YP_002539825.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221739387|gb|ACM40120.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 296

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L+VF  V  + SFT A   + LS+ +IS+ I  LE  VG+ L  R  RG+  +E
Sbjct: 1   MDRFTALKVFCAVIEARSFTKAGNNIGLSRPAISKNIRELEAHVGVTLVNRTTRGVMPSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS+ +++ SE+  + E       +S  +  G LR+   + LG +L+   L +F    P+
Sbjct: 61  AGSRYYQIVSELLWRHEQADEVASQSGAELRGTLRVTMPVTLGLHLILPVLPQFNEENPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             + L L  +   +     D A+R  + ++ S+L+ R + ++     AAP Y++  +   
Sbjct: 121 CSLDLCLSEEKQQLVEGNFDVAVRASQRLEDSTLMSRCIGSVTYAICAAPSYVQKSQSLK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L+ H L+  G  I      F+              +  + N   +I    V G GI
Sbjct: 181 SPKDLEDHQLVVHGANIGDQKWRFS---AQGESCYVSVRAQHKSNCSEAIKSLTVAGMGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +P   V        LV ++ D      T+Y  YP++     + + F +F+
Sbjct: 238 ARIPRPYVSRELAEGRLVELLSDWTMEPLTIYAMYPQSNFLPRRTRLFIDFM 289


>gi|170733140|ref|YP_001765087.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169816382|gb|ACA90965.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 316

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 124/299 (41%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 16  PLDLLDVALFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 76  DGEIFMVRADALLAAADAARASVGRGRSEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPS 135

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  D  D AIRL   ++ S+L+ RKL T       +P YL     P 
Sbjct: 136 VSLDLRLSDEIVDLVDDGYDVAIRLGA-LKDSTLVARKLATNRRVLCCSPAYLAERGTPR 194

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +  GD            AT    +       L  ++  +I +  V G GI
Sbjct: 195 HPADLTQHECVILGDQRDWS------FATPQGALTVRVGGRLVASNGEAIREALVDGFGI 248

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     +  LV +++D        ++  YP       K  AF  F+     D
Sbjct: 249 AIKSTWDVGPLLASGALVSVLDDYPFADDVAIWAVYPSRAHVPLKTLAFIAFLAEHFGD 307


>gi|187479375|ref|YP_787400.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115423962|emb|CAJ50515.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 309

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F+ AA  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLFYFSQVVDQGGFSAAARVLDIPKSRLSRRISQLEERLGVRLLQRTTRRLRLTTAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+       +  +++  ++PSG + ++  I L Q +L   L EF+  +P++ 
Sbjct: 63  ERYLHYCREMTASARAAEDAMRQLQIEPSGPVVVSCPISLAQQVLAPLLPEFMSAWPEVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           IQ++  N+ +D+  +  D A+R+R  +   + L+ R+         A+P YL+    P +
Sbjct: 123 IQMLATNRRVDLINEGVDLALRVRTKLDTDAELVVRQFGAASSTLVASPAYLQRHGTPET 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  ++F D  P+    ++                L  N ++ +        GIA
Sbjct: 183 PEDLLQHMTLSFND--PQTEVVWSLHNGKGEERHVTVAPRLCCNDFIVLAAAAANSRGIA 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLP    +       LV ++ D  +P   V+  YP        ++ F +F+  
Sbjct: 241 LLPTAATQTEMRRGELVPVLPDWRSPEGIVHCIYPSRRGMIPAVRVFLDFLSE 293


>gi|325272410|ref|ZP_08138802.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324102451|gb|EGB99905.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 301

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 10/304 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F  V   GSF+ AA Q  +S + +SRQ+  LE  +G +L  R  R L LTE
Sbjct: 1   MDQFSAMQSFRRVVDLGSFSAAASQAGVSHTVLSRQVKQLERHLGAQLLTRTTRRLHLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +R   ++  +++   +EL E   +P+G LR+      G+  L   L +F+  +P 
Sbjct: 61  AGALFYRHCVQILEQMQAMSLELSEHQQQPTGTLRLGVATAFGELELGRWLPDFVERHPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L   ++ +D+     D  +R+   + +SSL+ R+L    +   AAP YL+    P 
Sbjct: 121 LQIELHCSDRFVDLLEAEIDVCLRVTDQLPNSSLVARRLTGSEVLLVAAPGYLQRHGTPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  H L+ +  L               R I  PR   L  NS +++    +   GI
Sbjct: 181 TPDELTGHPLLGYSQLPHPQRLQLTNNQGEQRDILMPR--RLSANSPMALRAAAIGALGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL---KAR 295
           A    +IV D   N  LV ++E    P+ T+Y  YP++     K++A  +++     +AR
Sbjct: 239 ASFDRFIVHDALQNGRLVPVLEGWKLPARTLYAVYPQSRYLPPKVRALLDYVQAYYSQAR 298

Query: 296 DWKF 299
            W++
Sbjct: 299 -WEY 301


>gi|315182427|gb|ADT89340.1| hypothetical transcriptional regulator, LysR family protein [Vibrio
           furnissii NCTC 11218]
          Length = 293

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 136/294 (46%), Gaps = 15/294 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  SGSF+ AAE + +  + +SR +S LE ++GI +  R  R L LTE+G +
Sbjct: 6   DDLEILITVVDSGSFSQAAEVMDVQVAKVSRAVSRLEQQLGITILNRTTRRLELTEEGKR 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +L   + ++      P GKLR+        + L   ++EF   YPDI ++
Sbjct: 66  FVESVRAGLQQLRQAEEDIVSRGELPKGKLRVDAASPFMLHQLAPLVREFHAAYPDIDLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    ++  A+P YL     P + QE
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LNDSTLHARPLGKSALYVVASPDYLAQRGFPTTPQE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+++ F       +   N          EP I+C   +S  ++ Q  + G+GIA L 
Sbjct: 185 LHQHDIVGFTAPRTLNIWPLN-----GTEFIEPTIAC---SSGETVRQLVIAGNGIACLS 236

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLK 293
            ++VK++     LV +++           +   Y ++     ++ AF +FI  K
Sbjct: 237 GFMVKEDIAAGRLVALLDSHRKLHSDREFINAVYYKSSNVARRISAFIDFIQPK 290


>gi|261340640|ref|ZP_05968498.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317053|gb|EFC55991.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 308

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 129/286 (45%), Gaps = 10/286 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  + S   A+++L  ++S +S++I GLE  +G+ L  R    L+LTEQG   
Sbjct: 6   EMSTFVAVVDALSVVGASQKLGTTKSVVSQRIKGLEKRLGVSLLER-GTSLSLTEQGLLF 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R    +  ++   +  +        G+LR+ T+       L   L +F   YP I + +
Sbjct: 65  YRECVRILDEVSLAEEAVTPGRTDVCGRLRMTTSHTFMCTHLSPILADFAARYPQIALDI 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +++ I++     D AIRL   +  S+LI R L     +   +P YL+ C  PL  +EL
Sbjct: 125 VTEDRHINMHQPGFDVAIRLG-TLPDSTLIARHLARNLTYLCTSPAYLQRCGTPLHPEEL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ + +    P  +    W       +   R+ S L+ ++  S++     G GI +LP
Sbjct: 184 AHHDGLLYSHRAPGGV----WQLVHQGEVQPWRVRSRLRSDNAFSLLAAAKAGLGIMVLP 239

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            ++  +      L  I+ +       +   Y +  +++  ++A  N
Sbjct: 240 LFLGAEAVEKGELQVILPEWRPDGGNIVALYRKTRRDSPVIQALVN 285


>gi|254440111|ref|ZP_05053605.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198255557|gb|EDY79871.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 294

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 8/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DW  L+ F  V ++G+   AA QL  SQ ++SRQ+  LET+ G+ LF R    L LT
Sbjct: 1   MNIDWSLLKTFLTVVQAGTVAQAAAQLACSQPTVSRQLKELETQTGLTLFDRRGYRLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ +      +  +     + +       +G +RI+T+  +  + L   L      YP
Sbjct: 61  DAGASILEFAQNMADQANHLALAIAGKETVVNGTIRISTSEVIAYHFLPPVLVTLQEQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I +++I++N   ++S   AD AIRL +P     L++ K+ T+ + A+A+  YL+    P
Sbjct: 121 EIDVEIIVENSAANLSAREADIAIRLFRP-DKLGLVRTKIGTLEIGAFASKSYLELYGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  HNL+ + D   + ++ F        P   P +  ++ +++L        G+G
Sbjct: 180 RTLDDLVYHNLLGY-DQSAEILDGFR----KHLPDANPSLFSVRCDNHLVYWNMIRAGNG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA--RDWK 298
           I      +   +  L R++ D+      V+    EAL+ T +++A    +  +   R W+
Sbjct: 235 IGFCSTLMASQDKMLTRVLPDLKPDGNDVWLATHEALQKTPRVRAVWELLSSQLTKRLWE 294


>gi|163850194|ref|YP_001638237.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|163661799|gb|ABY29166.1| LysR substrate-binding [Methylobacterium extorquens PA1]
          Length = 307

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 137/299 (45%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF  V  SG F  AAE+L L + ++++ +  LE E+G++L +R  R L++T
Sbjct: 1   MDL-LQAMEVFVEVVESGGFARAAERLRLHRPAVTKAVQHLEAELGVQLLHRTTRKLSVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+  H     V   +  T       +  P G +R+   I L + ++   L  F   YP
Sbjct: 60  AEGAIFHERCRNVLADVADTLATF-SPTRPPKGPVRVDVPISLAKAVIIPALPGFCERYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L   +  +D+  +  DCA+R+   ++ S L  R++ T+ M   AAP YL    +P
Sbjct: 119 EVELTLRSSDHQVDLVGEGVDCAVRIG-TLEDSGLSVRRIGTVPMLTCAAPAYLARHGKP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++ LD H  + F     +   D+N+L    R +     S + V+   +++   + G G
Sbjct: 178 TGLENLDGHLAVNFLIRHTRRTMDWNFLID-GRTVARSLRSGIVVDDTEAMVTGAIAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   P   ++ +     LV I+ D+ T    +     +       +KAF  ++    RD
Sbjct: 237 LIQAPRPSLQPHVNAGTLVEILPDLATVPKPISLLSTDRRFAVPAVKAFVEWVQGLLRD 295


>gi|170735171|ref|YP_001774285.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821209|gb|ACA95790.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 316

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   ++  + E  ++  KPSG+L +  T   GQ+ +   +  +   YP 
Sbjct: 61  AGQRYLDRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQSYVMPAVVRYRERYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S L+ ++L  +     A+P YLK    P
Sbjct: 121 VAVELTLSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGDVGSVLCASPAYLKARGTP 180

Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L  H  +     L P+     +      R   E  +   QVN   ++      G 
Sbjct: 181 RTVSDLAGHACLRLVTPLFPRDRWHLD--GPNGRETVELPLPDFQVNIADALGTALRAGL 238

Query: 240 GIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP         +  LVR++ D      TVY  Y        K++ F +F+  
Sbjct: 239 GIGSLPMSAALPALASGALVRVLPDYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 294


>gi|167839327|ref|ZP_02466011.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 336

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 124/290 (42%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G
Sbjct: 3   TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 63  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 123 IELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 183 RDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y   ++    NLVR++         VY  YP       K++ +   +
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEAL 290


>gi|114331364|ref|YP_747586.1| transcriptional regulator, LysR family protein [Nitrosomonas
           eutropha C91]
 gi|114308378|gb|ABI59621.1| transcriptional regulator, LysR family [Nitrosomonas eutropha C91]
          Length = 291

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 133/295 (45%), Gaps = 12/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M F  + + +F  V ++ SF  AA+ + +  S++SR+IS LE  +G++L +R  R +TLT
Sbjct: 1   MKF-LNDMALFVEVVKAKSFRGAADAIGMPNSTLSRRISALEKTLGLRLLHRTTRKITLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  + +  Q +L E   +PSG LR +  +D     +   + EF  LYP
Sbjct: 60  EAGQIYYERCKRIVDEAKLAQEQLSEMLTQPSGVLRASLPVDFTVTYMAPLIAEFAKLYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I     L ++ +D+  +  D AIR+ KP ++S LI R L  +  + YA+P YL    EP
Sbjct: 120 GIVFDFDLTSRWVDLVNEPFDVAIRIGKP-ENSQLIARPLAVLPTYLYASPRYLDRSGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  +  G +        N   T    IG    S   +NS   I +   L  G
Sbjct: 179 AKPADLANHECL--GIMKADTWTLHNGTNTTKISIG----SRFTLNSVGMICRLATLDMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I ++ + IV D+     L R++        +        L    K + F  F+  
Sbjct: 233 IIMMMEKIVADDIASGRLRRVLPQWRGAPVSACAITATRL-LPAKTQHFIKFLQE 286


>gi|325529165|gb|EGD06141.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 308

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  +  SGS + AA +L L+ ++IS++++ +E+  G+ L  R  R + LT +G   
Sbjct: 9   DLSFFSTLVASGSLSAAARELGLTPAAISKRLTQMESRAGVGLINRTTRRMMLTPEGELY 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +  +++     L  +   P G LR+  T+  G++ +   +  F+  Y  + +QL
Sbjct: 69  LQHARRILDEIDELAELLGTAKKSPKGLLRVNATLGFGRSHVAPAISRFVTKYRQVSVQL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      ++ D  D  IR  +P   + +I R+L        AAP Y+ +   P +  +L
Sbjct: 129 QLSVTPPPLTDDAFDVCIRFGEP-PDTRVIARRLAGNRRLLCAAPSYIASHGLPTTAHDL 187

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +HN I    GD         +      +         L  N     +++ + G GI + 
Sbjct: 188 TRHNCIGIRQGDEAYGVWRLTSGRGASRKTEAVRINGTLTTNDGEIAVKWALEGHGILMR 247

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++ +K    + +LVR++ D  TP+  ++  Y +  + + +++AF  FI    +
Sbjct: 248 AEWDIKRYLADGSLVRVLPDYETPNADIFAVYSQRHQMSNRIRAFVEFIAQDLQ 301


>gi|218675083|ref|ZP_03524752.1| LysR family transcriptional regulator [Rhizobium etli GR56]
          Length = 299

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 125/293 (42%), Gaps = 7/293 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D + ++R F  VA+  SFT AA +L LS+S++S  +S LE  +GI+L  R  R +  
Sbjct: 1   MRRDEFTEMRAFLEVAKERSFTRAAAKLGLSRSALSHTVSALEERLGIRLLSRTTRDVAP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G +        +  +      +     KPSG +R+    D  + + +  L  FL  +
Sbjct: 61  TAAGERFMESIQPHFESITAGISAISALRDKPSGDIRVVCPDDAVELVFRPRLSAFLRDF 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ +++I+DN   +I     D  +RL + +    +  R    +     A+P YL+    
Sbjct: 121 PDVTVEIIVDNGFTNIVERQFDAGVRLGEAVARDMVAVRIGPDVSYSVVASPDYLERHGP 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P   Q+L  HN +     +P     + W    D      R+   L +++    +   + G
Sbjct: 181 PSIPQDLTGHNCVNL--RLPTSGGLYAWEFERDGREFSVRVEGQLTLSNIAPAIDAALDG 238

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            G+A +P  +V  +     L +++ D        +  YP     +    AF +
Sbjct: 239 IGLAYVPTDLVSQHVERGRLRQVLSDWCPTFQGYHLYYPSRRNPSPAFSAFVD 291


>gi|90426366|ref|YP_534736.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108380|gb|ABD90417.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 297

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/281 (25%), Positives = 116/281 (41%), Gaps = 4/281 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA   SFT AA +L +SQS++S  I  LE  +GI+L  R  R +  TE G
Sbjct: 6   NLGDLSAFVAVAEERSFTRAAAKLGVSQSALSHTIRELEARLGIRLLTRTTRSVAPTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +    +++     L +   KP+G +RI       + +L   L   L  YP+I+
Sbjct: 66  ERLLRTVAPRLAEIDAELAGLSDLREKPAGSIRITAGEHAAETVLWPALARLLKDYPEIK 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  DN   DI  +  D  +R  + +    +  R    + M A AAP Y      P   
Sbjct: 126 VEICSDNTFTDIVAERFDAGVRFGEQVSKDMIALRIAPDMRMAAIAAPSYFAQRPRPKRP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H  I         +  +       R +       L  N+    +Q  + G GIA 
Sbjct: 186 QDLTDHACINIRLPTYNSLYAWE-FEKAGRELKVRVEGQLIFNTLPLALQAALDGFGIAF 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTG 281
           +P+ +   +     LVR++ D   P    +  YP       
Sbjct: 245 MPEDLATSHLAAGRLVRVLGDWCPPFPGYHLYYPNRKPTPA 285


>gi|217418966|ref|ZP_03450473.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217398270|gb|EEC38285.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 358

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 124/290 (42%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G
Sbjct: 25  TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAG 84

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 85  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVS 144

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 145 IELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTP 204

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 205 RDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 262

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y   ++    NLVR++         VY  YP       K++ +   +
Sbjct: 263 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEAL 312


>gi|258624283|ref|ZP_05719232.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258583434|gb|EEW08234.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
          Length = 314

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 129/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE
Sbjct: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEERYGVKLLNRSTRHLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP+
Sbjct: 61  SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  SSLI RKL        A+P YL     P 
Sbjct: 121 VVPYLYLNDNISNLAESGLDVVIRYGE-LADSSLISRKLAASRRVLCASPAYLARKGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W    +       +      +    I Q+ + G G
Sbjct: 180 TPQDLAQHDCLA---MVRSNEEMKTWYFQDNEQHKVITVVPKSFADDGEVIRQWALAGMG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+++     LV ++   +             +   Y        +L+ F +F
Sbjct: 237 IALKSILDVQEDLNQKRLVTVLNGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LIEQ 300


>gi|238751395|ref|ZP_04612888.1| HTH-type transcriptional activator aaeR [Yersinia rohdei ATCC
           43380]
 gi|238710453|gb|EEQ02678.1| HTH-type transcriptional activator aaeR [Yersinia rohdei ATCC
           43380]
          Length = 303

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V   GSFT AA QL +S SSIS+ +S LETE+ IKL  R  R + LTE G 
Sbjct: 4   LKRMSIFAKVVECGSFTGAARQLAMSVSSISQTVSKLETELNIKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLASMTAEMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P    
Sbjct: 124 NLVTGMPAPDLIADGLDIVIRVGA-LQDSGLFSRRLGSMPMVVCAAKSYLAQYGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA +
Sbjct: 183 DMANFSWLEYSVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLNAGAGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P   V D      +  + +   +    +Y  Y E  K   K++   +++  
Sbjct: 240 PLMWVIDEIKRGEVEILFKRYHSDPRPIYALYTEKDKMPLKVQVCIDYLTA 290


>gi|332528776|ref|ZP_08404753.1| transcriptional regulator lysr family protein [Hylemonella gracilis
           ATCC 19624]
 gi|332041842|gb|EGI78191.1| transcriptional regulator lysr family protein [Hylemonella gracilis
           ATCC 19624]
          Length = 310

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 128/295 (43%), Gaps = 9/295 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  +  +GS + AA +L ++  ++S+ ++ +E  +G+ L  R  R ++LT +G   
Sbjct: 9   DLSFFSTLVLAGSLSGAARELGVTTPAVSKHLAQMEARLGLTLINRTTRRMSLTPEGEVY 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   ++  + +L+ +  +P G LR+  T+  G+  +   +  F+   P + IQL
Sbjct: 69  LEHARRILGDIDDLEHQLRGAKSEPQGLLRVNATLGFGRIRIAPLISAFVERNPKVDIQL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      I+ D  D   R   P   S +I R +        A+P YL+   EP + ++L
Sbjct: 129 QLSVNPPPITDDACDVCFRFGHP-PDSRVIARLIAPNRRIVVASPAYLRKHGEPRAPEDL 187

Query: 187 DKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCVLGSGI 241
            +HN I          +  F+       P G  +       L  N     + + + G GI
Sbjct: 188 VRHNCIGIRQGDEAYGVWRFSSPKASKTPSGGGKQVKIRGNLTTNDGEIAVNWALDGRGI 247

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L  ++ V     +  LV+++    TP   +Y  Y +  K++ +++A  +F+   
Sbjct: 248 LLRAEWDVARYLRSGRLVQLLRPWTTPDADIYAVYAQRHKSSVRIQALIDFVAAA 302


>gi|309778866|ref|ZP_07673637.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308922390|gb|EFP68016.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 315

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 126/296 (42%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LET +G++L  R  R + +T+ G
Sbjct: 3   DLNDLVLFASVVTHGSFSGAARALGIPKSRVSRRVADLETRLGVRLLQRSTRAVHVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +           + +  KPSG+LR++  + +    +   L +FL   PD++
Sbjct: 63  SAFFTHCESMTQAARAAFEVAEHAGEKPSGRLRVSCPVGVAHVFIAPVLSKFLRAQPDVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L + N+ +D+  D  D A+R+R  +  S+L+ R          A+P ++       + 
Sbjct: 123 LELDVTNRRVDVIGDGYDVALRVRSTLDDSNLVVRSFGVSDQVLVASPSFVAEHGPFETP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +     +    +     E   W  T      +       L  +    + Q  + G G+
Sbjct: 183 ESMRG---VMGVGVDGAAGERTRWRLTAPEGGAVDIEYTPALVTDDLYLMGQTALAGIGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LP  +  +   +  LV ++     P    +  +P        ++AF  F+  + 
Sbjct: 240 AQLPFNLCAEPVRDGRLVVLLPGYRLPVHQFHAVFPSRRGLVPAVRAFIEFLAEEL 295


>gi|268592447|ref|ZP_06126668.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291312237|gb|EFE52690.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 301

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 6/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  F  V   G F+ A   L + +S +SR+I+ LE ++ + L YR  R   +T
Sbjct: 1   MQYDLNDLYYFVKVVEYGGFSQAGLALGIPKSKLSRRIADLEKKLNVSLIYRSTRQFHVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++    V  + E     +      P G ++++  + L Q  L   L +F++ YP
Sbjct: 61  EVGQVFYQQCKNVVDEAEVAHELICSVQSHPKGTIKLSCPVALLQVYLNELLVDFMMKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI IQ++  N+ +D+  +  D AIR+R  P+  S L+ + L        A+P       E
Sbjct: 121 DIDIQILAVNRPVDVISEGLDLAIRVRSLPLDDSGLMMKVLGYSRRILVASPQLFAEQGE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  ++L  + ++   +             + D    +     L     L++ +  + G 
Sbjct: 181 LIEPEKLVDYPML--ANTEHSQNYTLTLKNSDDLSFTQHFTPKLATTDILTLYRAALKGV 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA LP  +V+   ++ NL+ ++     P   ++  YP        ++   N++
Sbjct: 239 GIARLPYGVVEKDIESGNLIEVLPQWQFPEDIIHAVYPSRKGLLPSIQLLLNYL 292


>gi|167565462|ref|ZP_02358378.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 336

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 125/290 (43%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G
Sbjct: 3   TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 63  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRGQHPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 123 IEITLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 183 RDLARHACLTLRTPAFPTHEWL--LEGPNGTEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y   ++    NLVR++         VY  YP       K++ + + +
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVDAL 290


>gi|171316742|ref|ZP_02905954.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171098092|gb|EDT42907.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 300

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 143/300 (47%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD   L    V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++   S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEEAAVDAGRSRARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P++ +++ + ++  D+  D  D A+R   P + SS   R L+  H+   A+  Y+   
Sbjct: 121 RFPELSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETHVLTCASAAYVARH 179

Query: 178 REPLSIQELDK-HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYC 235
            EP   ++L   H  +   D  P     + W     D  +       L VN   +++  C
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYGWEFHRGDEVVPFDAAGRLTVNDTGALLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V G G+A L +   +D   +  LV+++ +    +F +Y  +  +   + K++ F +F+  
Sbjct: 238 VGGEGVAQLLELYARDILADGRLVQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFVRE 297


>gi|171318438|ref|ZP_02907593.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171096352|gb|EDT41254.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 301

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE+++G++L +R  R  TLT+ G
Sbjct: 5   DLPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESQLGVRLLHRTTRQQTLTDDG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  + +      G L +    +LG+  +   +  F   +P++ 
Sbjct: 65  AQFHAQVLRILAEVERAETLMTDRRGTVGGLLCVTAPGELGRLRIAPLIAAFQRRHPELI 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P Y+     P   
Sbjct: 125 VQLMLTDAIVDLLAHDIDVAVRIGS-LADSTMIARELAPNHRVLCASPSYVAAHGLPAEP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I  GD                  +     + L  N   +     + G+GIAL
Sbjct: 184 AELRAHRCIVLGDQPRAEWR----FDGAQGMVAVEVTAALLTNDGGAARTLALEGAGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              + V    D   LVR++     P+  ++  YP       +++AF +F+  + RD
Sbjct: 240 KSIWDVGADLDAGRLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVDFLREQLRD 295


>gi|172060688|ref|YP_001808340.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993205|gb|ACB64124.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 310

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 129/302 (42%), Gaps = 13/302 (4%)

Query: 1   MSFDWDKL-----RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L      +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R
Sbjct: 1   MQRKFDDLLLGSIELFCLAAELGSFTLAATAASVTPAAVSRSVARLEERLGVRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G +      +   +L   + E       P+G LRI+     G   +   L  F
Sbjct: 61  QIRLTDSGRRYFEQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YPD++++  L N++ID + +  D AIR R P   SSL+ RKL    +   A P YLK
Sbjct: 121 RERYPDVRVETHLSNRNIDFAEEGFDLAIRGRAP-ADSSLVARKLEDAELVVVATPGYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI--MQ 233
               P ++ +L  H  I F   +P       WL        E   +     S   +  + 
Sbjct: 180 RAGVPRAVDDLHAHECIQFE--LPSSGRPIPWLFNDGTAEIEIATTGGYGTSGDVLAGVT 237

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     +IV+       L  ++      S      YP A   + +++ F +F+
Sbjct: 238 LARSGAGLFQTYRFIVELDLREGTLAEVLSGQGGRSRPFMLLYPHARYLSSRVRVFVDFL 297

Query: 291 FL 292
             
Sbjct: 298 VE 299


>gi|23501257|ref|NP_697384.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|23347142|gb|AAN29299.1| transcriptional regulator, LysR family [Brucella suis 1330]
          Length = 304

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 134/300 (44%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S + +S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVVSNRIKELEKNLGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 60  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 120 DIEVRLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S + L  D+H+ +      P   E +  L T +             +    + Q+ + G
Sbjct: 179 QSPEALLSDRHHCLLL--RFPGSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P + VK+   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 237 RGIINKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 296


>gi|103485581|ref|YP_615142.1| LysR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98975658|gb|ABF51809.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis
           RB2256]
          Length = 300

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 130/297 (43%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RV   V  +GS +  +  L     S+SR+++ LE  +G  L  R +R + LT+
Sbjct: 1   MDRLDAMRVLLAVVDAGSLSAGSRALGSPLPSVSRKVAELERYLGTNLLVRTSRNIQLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   LE T+         P G+L I   I+ G   +      F+  YP+
Sbjct: 61  AGRDYVEAARRIIADLEETERRASGEYQTPRGELSITMPIEFGVRHVIPIALAFIDEYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + LI  ++ + +  ++ D AIRL   +  S+L   K     + A A+P YL     P 
Sbjct: 121 VTLNLITSDRLVHMVDEHVDVAIRLGH-LPDSALFAVKAGEFRLIACASPAYLDRRGAPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S +EL  H+ I FG L        +    +  P   PR+S   VNS    +   + G G+
Sbjct: 180 SPRELSGHDGIMFGPLPMFWGYRIDGEDVMCTP--RPRVS---VNSAAGNLAAVLSGVGV 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L DY V ++     LVRI+ D       V+  YP       K++AF ++   + R
Sbjct: 235 ARLFDYQVSEHLQSGALVRILPDADGEPRPVHIVYPRQGLLPLKVRAFIDWASPRLR 291


>gi|262404307|ref|ZP_06080862.1| transcriptional regulator LysR family [Vibrio sp. RC586]
 gi|262349339|gb|EEY98477.1| transcriptional regulator LysR family [Vibrio sp. RC586]
          Length = 297

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 139/301 (46%), Gaps = 12/301 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  ++ +F  V   GSFT A E L +++S +S QI+ LE  + ++L  R  R ++LT
Sbjct: 1   MLNELKRIAIFNKVVECGSFTSAGESLGMTKSKVSEQITTLEKNLNVRLLNRTTRKVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   ++ +  +    E     +   + + SG +RI TTID+G  LL   L+EF  LYP
Sbjct: 61  TEGGTFYQYSHGLLGMAEEALYSVNHLASEVSGIIRIGTTIDVGTFLLAPLLEEFYQLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++  L L++   D      D  IR+ + + SSSL+ R +    +  YA+  YL      
Sbjct: 121 QVKFDLQLEDGLQDFVESNLDIVIRMGE-LTSSSLVGRVIAPFEIGLYASQSYLDKSPPL 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCV 236
             I++L  H+ I    L        N   T+  P GE     L+     N+ L++M    
Sbjct: 180 EKIEDLQHHDWIYLTRLCLP-----NHTMTLVNPEGERHDVKLEPQHISNAPLAVMAMVQ 234

Query: 237 LGSGIALLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G GI  +  +++     P LVR+  D    S T+   YP       +++ F +++    
Sbjct: 235 QGLGIGAIAHFLINKVPGPALVRLFPDFYQLSTTMNILYPSRKNLPPRVRLFIDYLVESL 294

Query: 295 R 295
           R
Sbjct: 295 R 295


>gi|319791169|ref|YP_004152809.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593632|gb|ADU34698.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 308

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 130/298 (43%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +L  F  VA  GS T AA+   ++ + + R++  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDRLKQLESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEERLGVKLLVRTTRRITLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +  + +  +  +    VK SG LR+      G+  +   +  F  L+P+
Sbjct: 61  EGSAFLEDCQRLLTEFQNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPLVPRFHALHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D++ +  DCA+R+   +  SSL+  +L        A P +L+    P 
Sbjct: 121 VTISLNLSDRVVDVTGESFDCAVRVGD-LPDSSLVSVRLADNRRRCVATPDFLRRHGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL---ATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              EL +   +T      +       +   A V+  I       L  +    +  +C+ G
Sbjct: 180 HPGELSRFACLTLSSDASQTRGWAFRVTTEAGVEELIHLRPSGPLDCSDGQVLHDWCLAG 239

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA    + V+   D   LV ++++   P   +Y  +  A     +++ + +F+  +
Sbjct: 240 HGIAWRSTWEVEAEIDAGLLVPVLDEFAAPPNGIYAVFAGAKHLPLRVRLWLDFLKDQ 297


>gi|254561342|ref|YP_003068437.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254268620|emb|CAX24579.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           DM4]
          Length = 320

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF VVA + SF  AA++L LS++++S+ ++ LE  +G +LF+R +R L LTE G
Sbjct: 6   DFEAWAVFAVVADALSFARAADELGLSKATVSKAVARLEGRLGARLFHRTSRRLALTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  +    +++  P G++R+A  +  G   +   L EFL  +  + 
Sbjct: 66  RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHVAPVLPEFLAAHAQVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     A P YL     P   
Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLARYGPPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L     + +  L       F         +       L+ N+  +++     G G+A+
Sbjct: 185 EDLKARACLGYAYLPTPDRWPFT--NAAGETVTIVPEGPLRANNADALVPALRAGLGLAV 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            PD+ + ++     L R+M D   P   +    P  L    ++ A   F+
Sbjct: 243 QPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292


>gi|207743951|ref|YP_002260343.1| hypothetical protein RSIPO_02134 [Ralstonia solanacearum IPO1609]
 gi|206595353|emb|CAQ62280.1| hypothetical protein RSIPO_02134 [Ralstonia solanacearum IPO1609]
          Length = 284

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/290 (28%), Positives = 128/290 (44%), Gaps = 11/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V ++  F  AAE + +  S++SR+I  LE  +G++L +R  R + LTE G    
Sbjct: 1   MALFVEVVKAKGFRSAAEAMGIPNSTLSRRIGTLEKAIGLRLLHRTTRKIELTEAGQLYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +      +L E   +PSG LR +  +D     L   + EF  LYP I     
Sbjct: 61  ERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFAGLYPGITFDFD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +D+  +  D AIR+  P + S LI R L ++  H YA+P YL    EP    +L+
Sbjct: 121 LTPRRVDLVSEPFDVAIRMG-PSEDSQLIARPLASLTPHLYASPGYLDRSGEPHKPADLE 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  ++        ++D    ATV             +NS   I +  VL  GI L+P+ 
Sbjct: 180 RHECLSILKAGSWTLQDGKRTATVSVG------GRFTLNSVGMIRRLAVLDLGIVLMPEE 233

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IV D   +  L RI+         VY    E      K + F  F+  + 
Sbjct: 234 IVADELASGKLRRILPGWHGTPMPVYAIT-ETRLLPAKTQRFIEFLRARL 282


>gi|146340660|ref|YP_001205708.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146193466|emb|CAL77482.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 303

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 131/289 (45%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSFT  A++L+ +Q +ISRQI  LE  +  +LF R  R LTLT+ G   +
Sbjct: 7   MRTFVRVVEAGSFTAVADELNTTQPTISRQIGALEEHLRTRLFTRTTRALTLTDDGRVFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    +   +  +     KPSG LR+A  +  G+  +   L  FL  YPD+ I LI
Sbjct: 67  EHALRALEAVSEAEGAVGRRRQKPSGLLRLAAPVVFGRLHVVPRLPAFLKRYPDVSIDLI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   D+     D AIR+   I    LI R++ T+     A+P YLK  R P    +L 
Sbjct: 127 MSDGFADLVEQGIDVAIRVGD-ITDPGLIARRIGTVQRVTVASPAYLKAHRAPKVPADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I +  L       F    + D P+        + ++  ++    + G GIA++P +
Sbjct: 186 LHQCIVYSRLATGNRWLFE---SKDGPVAVEVSGRYRADNSEAVRDGVLGGLGIAVIPTF 242

Query: 248 I-VK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             V+  ++  +  +++D       ++  Y        K++A  + +  +
Sbjct: 243 AFVREIESGAVKVLLQDYAPRPLPMHAVYASRRFVPLKVRAIIDHLAHE 291


>gi|16264543|ref|NP_437335.1| putative transcriptional regulator, lysR family protein
           [Sinorhizobium meliloti 1021]
 gi|307307611|ref|ZP_07587343.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307319378|ref|ZP_07598806.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15140680|emb|CAC49195.1| putative transcriptional regulator, lysR family protein
           [Sinorhizobium meliloti 1021]
 gi|306895000|gb|EFN25758.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306901737|gb|EFN32338.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 315

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 129/298 (43%), Gaps = 5/298 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +RVF  V   G+ + A     ++ +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNVRVFVRVVELGTLSAAGRDQRVTPAVASNRIKELERHMGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   +   +  + + S  P G L+I   + +G+ L+   + EF   YP
Sbjct: 60  EHGRVFYEGAVKILEAVNEAESAIADLSRNPKGALKITAPLGIGRRLIAPGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   ++ S+L  R ++        +P Y +    P
Sbjct: 120 DIEVRLRLSDHNVDILAEGVDIAFKLG-ILEDSNLRMRGIMNCDRVLCGSPRYFERRGIP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  +L  H+        P   E +  L T D             +    + Q+ + G G
Sbjct: 179 SSPDDLLSHSHDCLLLRYPGSKEYYWTLQTPDGVRKFEVGGPYDSDDGDVLTQWALDGRG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I   P + VK   D   LV ++E+       +   YP       K++   +F+  + +
Sbjct: 239 IVNKPLFEVKQHIDEGLLVPVLEETPPLGAQLAAIYPHKRFQDPKVRLMIDFMAERCQ 296


>gi|75674686|ref|YP_317107.1| LysR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74419556|gb|ABA03755.1| transcriptional regulator, LysR family [Nitrobacter winogradskyi
           Nb-255]
          Length = 309

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  RVF  V    SFT AA+ L L +SS+S  +  LE+ VG +L +R  R +  T 
Sbjct: 1   MDRIDLFRVFVRVVELASFTRAADALVLPRSSVSAAVRELESRVGARLLHRTTRKVVPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++    +   +E T+   ++S+ +P GKL++     LG+ ++   L +F   YPD
Sbjct: 61  DGTAFYKRCLRLLADVEETEALFRQSARRPVGKLKVDVPGRLGRLIIVPALPDFFARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L + ++ +++     D  +R+   +  S LI R +  + +   AAP YL     P 
Sbjct: 121 IELDLGVTDRAVNLVEQSVDGVLRVG-VLSQSGLIARSVGVLPLINVAAPSYLGRHGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +LD H  + +       +ED+ W+              + VNS  + +   + G G+
Sbjct: 180 TPDDLDTHLAVRYASPSTGRIEDWEWIDN-GHVRTRVVAGRITVNSAEAYIACALAGLGM 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y VK +     LV I+       F + F YP     + +++ F +++
Sbjct: 239 IQIPAYDVKPHLAAGELVEILPHHRAQPFPMTFLYPSRQHRSRRVQVFADWL 290


>gi|115360530|ref|YP_777667.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285858|gb|ABI91333.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 345

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 143/291 (49%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSFT AAE+L + + ++SR +  LE ++  +LF R  R   LT +G + +  
Sbjct: 35  AFVAVASEGSFTKAAERLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGRRFYEN 94

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +   ++     ++ E     P G +RI++ +  G+ ++   L++F   YPDI I L+L
Sbjct: 95  CHQGVAQIVEAMNDMLELRQGPPRGLIRISSAVGFGRKIVAPLLEKFAQAYPDIIIDLLL 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++ ID+  +  D + R  + I+ SS+I R+L+ + M   AAP Y+     P  I++LD+
Sbjct: 155 DDRPIDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVARHGLPQRIEDLDR 213

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I F     +    F W   VD  + +    S L  N    +++  + G+GIA +  Y
Sbjct: 214 HECINFRFASGRV---FEWEFNVDGRMQKYLPTSRLTFNDADLVLRSVLNGAGIAQMAGY 270

Query: 248 IVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++D+     LV  +   +      Y CY        +++ F +F+  + R
Sbjct: 271 QIRDHLASKELVVALAKHVPEDRGHYICYLSRQHLPTRIRIFVDFMTEQIR 321


>gi|323966589|gb|EGB62022.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|323978867|gb|EGB73947.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
 gi|327251846|gb|EGE63532.1| HTH-type transcriptional activator ttdR [Escherichia coli STEC_7v]
          Length = 310

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +PLS+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPLSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LVR++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVRVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|294648659|ref|ZP_06726121.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292825449|gb|EFF84190.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 300

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 142/300 (47%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE+L  + S +SR +S LE+++ + L  R  R L LT
Sbjct: 1   MKSSIEELLAFITIVDTGSFVAAAERLGQTASGLSRSLSRLESKLDVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ + L   +  L  S    SG +R+ + +    +++   ++ F   YP
Sbjct: 61  QEGQQFLNHARKILNDLNAAEEALLRSDQDTSGIIRVDSAVPFILHVIAPLMQLFHQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+I+L  +++ ID+     D A R  + +  SSL  + +    ++  A+P YL     P
Sbjct: 121 NIEIELNSNDQVIDLLEHKTDVAFRFGE-LHDSSLHAKLVCQSRLYLVASPAYLTQRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              Q+L  H++I F     + +    W   VD      + S ++ +S  ++ Q C+ G G
Sbjct: 180 QHSQQLAMHDVIGFT----RPLYINKWPIKVDGEYFVAQ-SSIKASSGETVRQLCLRGLG 234

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L ++ +    +   LV + ED I  S+  ++  Y +      +++ F  F+  +   
Sbjct: 235 IARLSEFEIWKDLEEGRLVALFEDQIEHSYQRIHAVYYQQEHLPKRVRLFIEFLTEQLEQ 294


>gi|261213090|ref|ZP_05927374.1| transcriptional regulator [Vibrio sp. RC341]
 gi|260838155|gb|EEX64832.1| transcriptional regulator [Vibrio sp. RC341]
          Length = 301

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE+L +S+S +SRQ+S LE  +G+ L  R  R L+LT+
Sbjct: 5   QLNLADIRAFVLIAKLGNFTKAAEELEVSRSHVSRQLSQLENSMGVTLVIRTTRSLSLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI-ATTIDLGQNLLQGNLKEFLLLYP 120
            G   +R   +    +E   +   +   +  G+LRI +    +G+ L+      F+   P
Sbjct: 65  AGELFYRQCEQALSSIEQAVLAAVDDVQEARGELRINSVGGHIGEELIADICSAFMQENP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I L   +  +D+  +  D A R+ K ++ +S + RKL  I M   A+P Y     +P
Sbjct: 125 DVRIHLDFSSHRVDLIEEGFDVAFRMGK-LEDASFVARKLTEIRMSTLASPTYFTLRGQP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  +T G +     +      T+D     P    LQ  +   +++  +  +G
Sbjct: 184 QHPKQLTDHRCLT-GSVKRWSYQHKETKQTLD----VPVDGDLQCKNGRVLVRTALAHNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +P +          LV + +D   PS      Y +      +LK F  F
Sbjct: 239 IIRVPTFYCHQEIARGELVEVFQDWHIPSVEFSLIYHKDKYQPVRLKRFIEF 290


>gi|161520211|ref|YP_001583638.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353611|ref|YP_001949238.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344261|gb|ABX17346.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337633|dbj|BAG46702.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 306

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 130/297 (43%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDKLDGVTTFVQVVESGSFALAAERLGMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +P GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALAELEAAEADLDCGRNEPRGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDLIEEGIDLAVRIGPLEDSTSLAVRRLGTQYGSLGAAPSYLARYGMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H  + +       ++ +   A     +       L  +   +I      G G
Sbjct: 181 QSLDDLKNHRTVAYSR--SGVVQPWYLRAPDGSTVHIDMPHQLSFDDVQAIAAAGASGFG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP +++        +V +++        ++  +P+      K +   + +    
Sbjct: 239 IAWLPSWLLDQYVKRGEMVVVLDRCFVCEGDIHAIWPKTRYLPRKTRCVIDALVEAV 295


>gi|313499387|gb|ADR60753.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 299

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 131/300 (43%), Gaps = 13/300 (4%)

Query: 3   FDWD----KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
            D+     ++ +F  VA++GS + AA  L L+ S++SR ++  E  +G +L  R  R LT
Sbjct: 1   MDFSGRSGEMEIFAKVAQAGSLSAAARALGLTPSAVSRILARTEQRLGTRLLLRTTRALT 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT +G    R    V   +   +  + +    P G+LR++  +   +  +   L  F   
Sbjct: 61  LTPEGEAYLRGARRVLADMLEVEEAITDQ-GVPRGRLRVSAALGHARLTVVPLLAAFSAR 119

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP + + L L ++  DI    AD A+R    +  SSL  R +        A+P YL+   
Sbjct: 120 YPQVLVDLTLSDEVADILGGQADVALRFGH-LPDSSLSARAIGETGQVVVASPEYLQRHG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            PL  ++L +HN + F     + M D+                 ++ +S  ++ Q   LG
Sbjct: 179 TPLEPEDLARHNCLRFN--FRRAMPDWP-FHRDGHTFSLKVKGNIECSSGEALAQLARLG 235

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +G+A +  + V D+     LV ++E         ++  +        +++ F +F+  + 
Sbjct: 236 AGVARIGTFTVADDLANGQLVPLLEAYNPGDREPIHAVFVGGPAMPARVRVFVDFLVEQL 295


>gi|188492459|ref|ZP_02999729.1| transcriptional regulator, LysR family [Escherichia coli 53638]
 gi|188487658|gb|EDU62761.1| transcriptional regulator, LysR family [Escherichia coli 53638]
          Length = 302

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSCIVEKDMISVAIGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + ++  ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELEAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED  T        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|288933957|ref|YP_003438016.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288888686|gb|ADC57004.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 305

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 132/298 (44%), Gaps = 5/298 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  SG+F  AA  LH+++S++ + I+ LE  +G+ LF R  R   LT
Sbjct: 1   MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G + +    E   ++   +  LQ    +  G+LRI+  +  GQ  +   L      YP
Sbjct: 61  EEGEQFYHQCREALARIREAEEALQRGKGEVQGRLRISLPVLFGQRCVAPLLFRLSQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +++  +  D A+R+     + SL  R L    M   AA  YL+    P
Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGNLADTGSLRARALGEHGMVLCAAADYLRRQPAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I  L +H  + +  L    ++ +         +     + L  + + +I      G G
Sbjct: 181 QTIAGLSEHRTLGY--LHNGQLQKWQLYDPQQGEVRFSPQTGLVQDDFAAIAAAVQQGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA LPD++V     +  L +++       F ++  +PE      K +   + +    R
Sbjct: 239 IAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEGPWLPQKTRVAIDALREGLR 296


>gi|121635577|ref|YP_975822.1| LysR family transcriptional regulator [Neisseria meningitidis
           FAM18]
 gi|120867283|emb|CAM11054.1| probable LysR-family transcriptional regulator [Neisseria
           meningitidis FAM18]
 gi|325145229|gb|EGC67509.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M01-240013]
 gi|325199012|gb|ADY94468.1| transcriptional regulator, LysR family [Neisseria meningitidis
           G2136]
          Length = 303

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 140/289 (48%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +       + ++      +  +         ++ ++ L + +    G+ I   P +
Sbjct: 186 GLPAVLPTYTNQQKLDLTR--KSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPLW 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + +    +LVR++ +   P+  +   Y +    + K+++F +F+  K
Sbjct: 244 AAEHDLRCGSLVRLLPEYTVPTDRLNAVYADRAFLSAKVRSFIDFLNEK 292


>gi|110643304|ref|YP_671034.1| transcriptional activator TtdR [Escherichia coli 536]
 gi|170682678|ref|YP_001745332.1| transcriptional activator TtdR [Escherichia coli SMS-3-5]
 gi|215488391|ref|YP_002330822.1| transcriptional activator TtdR [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218701831|ref|YP_002409460.1| transcriptional activator TtdR [Escherichia coli IAI39]
 gi|218706685|ref|YP_002414204.1| transcriptional activator TtdR [Escherichia coli UMN026]
 gi|293406673|ref|ZP_06650599.1| transcriptional activator TtdR [Escherichia coli FVEC1412]
 gi|293416499|ref|ZP_06659138.1| transcriptional activator TtdR [Escherichia coli B185]
 gi|298382412|ref|ZP_06992009.1| transcriptional activator TtdR [Escherichia coli FVEC1302]
 gi|300818825|ref|ZP_07099031.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300901441|ref|ZP_07119526.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300937457|ref|ZP_07152283.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|301021851|ref|ZP_07185814.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|312968597|ref|ZP_07782806.1| HTH-type transcriptional activator ttdR [Escherichia coli 2362-75]
 gi|331654659|ref|ZP_08355659.1| HTH-type transcriptional activator TtdR [Escherichia coli M718]
 gi|118574170|sp|Q0TD46|TTDR_ECOL5 RecName: Full=HTH-type transcriptional activator ttdR
 gi|110344896|gb|ABG71133.1| hypothetical transcriptional regulator YgiP [Escherichia coli 536]
 gi|170520396|gb|ACB18574.1| HTH-type transcriptional activator TtdR [Escherichia coli SMS-3-5]
 gi|215266463|emb|CAS10901.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218371817|emb|CAR19672.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|218433782|emb|CAR14699.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|284923088|emb|CBG36181.1| LysR-family transcriptional regulator [Escherichia coli 042]
 gi|291426679|gb|EFE99711.1| transcriptional activator TtdR [Escherichia coli FVEC1412]
 gi|291431855|gb|EFF04838.1| transcriptional activator TtdR [Escherichia coli B185]
 gi|298277552|gb|EFI19068.1| transcriptional activator TtdR [Escherichia coli FVEC1302]
 gi|300355143|gb|EFJ71013.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300397867|gb|EFJ81405.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|300457492|gb|EFK20985.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300528610|gb|EFK49672.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|312286815|gb|EFR14726.1| HTH-type transcriptional activator ttdR [Escherichia coli 2362-75]
 gi|323188496|gb|EFZ73781.1| HTH-type transcriptional activator ttdR [Escherichia coli RN587/1]
 gi|331048041|gb|EGI20118.1| HTH-type transcriptional activator TtdR [Escherichia coli M718]
          Length = 310

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LVR++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVRVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|323525605|ref|YP_004227758.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382607|gb|ADX54698.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 314

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 141/314 (44%), Gaps = 20/314 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVSVIDSGSITAAAEKLGQTVSGVSRALTRLEKKLDTALVRRTTRRLQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGEGFLQRARAILDAMEEAEESVARKRRRPSGRLRVDAASPFMLHCIAPHMTAFSELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  + + +D+     D AIR+   +Q S+L  R L +  +   A+P YL    EP
Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRIGA-LQDSTLHARALGSSRLRVVASPAYLAAHGEP 179

Query: 181 LSIQELDKHNLITF-----------GDLIPKCMEDFNWLATVDRPIGEPRI----SCLQV 225
            ++  L +H LI F            +   +       L    R  G+P        +  
Sbjct: 180 KAVDALRQHRLIGFTAPEHLNRWPLRERGARSSASSGRLGRDGRDGGKPEPLKIEPSITA 239

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTG 281
           +S  ++ Q  + G GIA L D+++     +  LV I+   +      V   Y ++    G
Sbjct: 240 SSGETLRQLALSGWGIACLADFMIAADIRDGRLVPILGHALFDERQPVAAVYYQSASLAG 299

Query: 282 KLKAFRNFIFLKAR 295
           +++ F +FI  + +
Sbjct: 300 RVQCFLDFIASRVQ 313


>gi|261212747|ref|ZP_05927031.1| transcriptional regulator LysR family [Vibrio sp. RC341]
 gi|260837812|gb|EEX64489.1| transcriptional regulator LysR family [Vibrio sp. RC341]
          Length = 314

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 131/304 (43%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE
Sbjct: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP+
Sbjct: 61  SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  SSLI RKL T      A+P YL     P 
Sbjct: 121 VVPYLYLNDNISNLAESGLDVVIRYGE-LADSSLISRKLATSRRVLCASPAYLARKGIPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W    +       +      +    I Q+ + G G
Sbjct: 180 TPQDLAQHDCLA---MVRSNEEMKTWHFQENEQHKVITVVPKSFADDGEVIRQWALAGMG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+D+     LV +++  +             +   Y        +L+ F +F
Sbjct: 237 IALKSILDVQDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LMEQ 300


>gi|218530021|ref|YP_002420837.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218522324|gb|ACK82909.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 310

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 122/297 (41%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + +R+F   A +GSF+ A   L LS S IS +I  LE  +G  L  R  R + LTE 
Sbjct: 2   LSLESVRIFMRAAETGSFSAAGRSLRLSPSVISYRIQTLEEHLGCLLLTRTTRRMNLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++   +E  +  ++     P G L++   + LG+ ++   +  F   +P+ 
Sbjct: 62  GRVFYDRCLDIAASVERAEKSVETQGAAPRGTLKVTAPLTLGRRVVAPLIPAFRERHPEA 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+  +  D A+RL + ++ SS   RK+  I     A+P YL     P S
Sbjct: 122 DVHLRLSDHLLDLVQEAVDVAVRLAQ-VRDSSFTLRKVADIERILCASPGYLAEHPAPES 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L  H  +          E F W L   D  +  P    +  +    + ++ + G GI
Sbjct: 181 PADLIDHACLLLRF---PGSEQFRWSLRDGDEVVTLPVAGPIDADDGDVLTEWALQGQGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L P + V     +  LV ++        T+   YP       + K F        R
Sbjct: 238 VLKPVFEVAPYLADGRLVPVLPGAPPTPVTLGVVYPSRKMLPARAKTFVEMTTEALR 294


>gi|237508790|ref|ZP_04521505.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|235000995|gb|EEP50419.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 358

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 124/290 (42%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G
Sbjct: 25  TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAG 84

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 85  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVS 144

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 145 IELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTP 204

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 205 RDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 262

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y   ++    NLVR++         VY  YP       K++ +   +
Sbjct: 263 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEAL 312


>gi|218695361|ref|YP_002403028.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|218352093|emb|CAU97830.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
          Length = 307

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGVPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLVIKERDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|213161746|ref|ZP_03347456.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213585908|ref|ZP_03367734.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213648332|ref|ZP_03378385.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213861326|ref|ZP_03385796.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829414|ref|ZP_06547026.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 303

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARHPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|170734025|ref|YP_001765972.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817267|gb|ACA91850.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 295

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 132/287 (45%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R +  +E  +G +L  R  R L+LT+ G    
Sbjct: 7   MRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAGHLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  +     +P G L+IA  +  G ++L   +  F + +P I  ++ 
Sbjct: 67  AQIRHVIDEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVPEVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D  + L + I +++L++R L  +     AAP Y++    P   Q+L 
Sbjct: 127 IVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLRQLVCAAPQYVERHGTPAHPQDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F          F+   T  R    P  S    N+   I  + + G GIA+LPD+
Sbjct: 187 SHACLAFHADFMGEYLSFDHDQT--RITVRPNKSA-SSNNIGLIRNWALSGMGIAVLPDF 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +VK   D+  L+ ++      +  +   YP       K + F + + 
Sbjct: 244 LVKSDLDDGRLLALLPGYRLEALEMNVAYPSRRHFPRKARLFVDHLI 290


>gi|170736254|ref|YP_001777514.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818442|gb|ACA93024.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 300

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 134/297 (45%), Gaps = 12/297 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++++  +   G+FT AA+ L L + ++++ +  LE E+G++L  R  R +++T 
Sbjct: 1   MDRLQTMQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGVRLLNRSTRRVSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   H    ++   ++       +    P G+LRI   + L + ++   L +F   YP 
Sbjct: 61  EGEAFHARCVQLLAGIDDAFASFPKQRAVPKGRLRIDIALALAKTIVIPALPDFQQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++  D+  +  DC +R+   ++ SS++ R +  + M   A+P Y+     P 
Sbjct: 121 IELVLGASDQPADLIGEGIDCVVRVG-TLKDSSMVARTVGAVSMATCASPAYIARHGLPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H  + F     + + ++ +       +     S L  ++  +++   + G GI
Sbjct: 180 TLDDLRTHRAVNFFTGRNRRVLEWTFRPH-GETVAVKLASSLLTDNSEALLSCGLAGLGI 238

Query: 242 ------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 AL P     D+  L+ ++  V      V   YP       K++AF +++  
Sbjct: 239 VHALRPALQPSI---DSGQLIELLPGVPAVPKPVSVLYPNRAHLPDKVRAFIDWLTE 292


>gi|115352578|ref|YP_774417.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|170697665|ref|ZP_02888753.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|115282566|gb|ABI88083.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
 gi|170137413|gb|EDT05653.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 300

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 142/300 (47%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD   L    V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++   S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEEAAVDAGRSRARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P++ +++ + ++  D+  D  D A+R   P + SS   R L+  H+   A+  Y+   
Sbjct: 121 RFPELSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETHVLTCASAAYVARH 179

Query: 178 REPLSIQELDK-HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYC 235
            EP   ++L   H  +   D  P     + W     D  +       L VN   +++  C
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYGWEFHRGDEVVPFDATGRLTVNDTGALLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V G G+A L +   +D      LV+++ +    +F +Y  +  +   + K++ F +F+  
Sbjct: 238 VGGEGVAQLLELYARDILAEGRLVQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFVRE 297


>gi|218694373|ref|YP_002402040.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|218351105|emb|CAU96809.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
          Length = 302

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 126/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +     P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAVTPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + ++  ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELEAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED  T        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|146311255|ref|YP_001176329.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145318131|gb|ABP60278.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 310

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 6/290 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  +  SGS + AA QL  +Q+++SR++  LET +G++L  R    + LT+ G +
Sbjct: 11  ELMRTFIRIVESGSLSAAARQLDTTQATVSRRLQSLETLLGVRLLLRTTHAMKLTDDGER 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     V       + E+ ++  +P G LR+      GQ  L   L +FL  YP + I+
Sbjct: 71  CYHHARRVLDSWLALEDEVGQAEDEPVGILRVRAPHAFGQEQLLPPLMQFLTRYPQLSIE 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L+++ +D   D  DCAIR+   +   + +   L  +      +P  L     P+   +
Sbjct: 131 WKLNDRSVDFLSDDIDCAIRVGAEV-DPATVSVLLAEVPRSVVVSPALLAQFATPVHPDD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L     +       + +E F     V  P        L  +S        ++G G+A + 
Sbjct: 190 LSALPWVALSTFYHQHIELFK--GGVIEPTRVAISPRLSTDSLYVARNTALMGLGVAAVS 247

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + V+++     LV ++ D       V+  YP +     +L+ F   +  
Sbjct: 248 SWTVEEDIRQGRLVHLLPDWQPSPLPVHLVYPWSRYYPARLRRFLEMMRE 297


>gi|146338059|ref|YP_001203107.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146190865|emb|CAL74870.1| putative transcriptional regulator, LysR family [Bradyrhizobium sp.
           ORS278]
          Length = 294

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 140/301 (46%), Gaps = 12/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++ F  VA    F  AA +L LS S+I+R ++GLE  +G++L  R  R +TLT+
Sbjct: 1   MDRIDAMQAFVTVAELNGFAPAARRLKLSPSAITRLVAGLEEHLGVRLLQRTTRSVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   LE  ++      ++P G+L ++  +  G+  +   +  +L  YP+
Sbjct: 61  AGRRYLERVRRILTDLEEAELAAASERLQPVGRLVVSAPVGFGRLHVGPVMAAYLSRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +L L+++ I++  D  DCA+R+   +Q SSL+ R++ ++      AP Y K   EP 
Sbjct: 121 VAGELRLEDRQINLVDDGVDCAVRIGH-LQDSSLVARQVGSMRRIVVGAPAYFKAHGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + + KH  I FG        D        R +       L  N+  + +QY   G G+
Sbjct: 180 APEAVAKHQTIQFGPA------DEWQFVKEGRELRIAVSPRLVTNNADAAIQYAEAGGGV 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +  Y   +      L R+M         ++  +P +   + K++AF + +     +W+
Sbjct: 234 TRVMAYQAAEMLRAGRLRRVMTKFEPAPVPIHIVFPSSRLLSAKVRAFVDLVTETC-NWR 292

Query: 299 F 299
           F
Sbjct: 293 F 293


>gi|238756888|ref|ZP_04618076.1| transcriptional regulator [Yersinia aldovae ATCC 35236]
 gi|238704718|gb|EEP97247.1| transcriptional regulator [Yersinia aldovae ATCC 35236]
          Length = 300

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 128/290 (44%), Gaps = 10/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  SGSF+  A QL +S S+ISR IS LE  +  +L  R  R L L++ G ++ 
Sbjct: 1   MAIFVKVVESGSFSAVARQLGVSPSAISRSISRLEKALATRLLQRTTRKLRLSQSGEEVF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  + +     +      + + +P G +RI+    +G+ ++  ++ EFL  Y  I +QLI
Sbjct: 61  KRCNVMLSAANSVMEVSGQYNQEPEGLIRISIPKAVGRFVIHPHMPEFLRRYSKIDVQLI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD+  +D+  +  D AIR+        +I R+L+ I     A P YL +   P    +L 
Sbjct: 121 LDDHYVDLIDENIDLAIRITDQ-PPPGMIGRQLMDIEHLLCATPEYLASRGTPSHPHDLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ I  G+        F      ++ +          N     +   +   GI  LP +
Sbjct: 180 HHSCIYLGETPGDARWKFR---QGNKTVTVAVRGRYAANHTGVRLDAALQHIGIGSLPYF 236

Query: 248 IVK---DNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +       +V+++ +     + S  ++  YP       KL+ F ++I 
Sbjct: 237 TARTALHQGLIVQVLPEWRFVSSYSGGLWLLYPPTHYLPVKLRVFIDYIV 286


>gi|170701136|ref|ZP_02892110.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133958|gb|EDT02312.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 301

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 135/295 (45%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LE+++G++L +R  R  TLT+ G
Sbjct: 5   DLPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESQLGVRLLHRTTRQQTLTDDG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +I + +      G LR+    +LG+  +   +  F   +P++ 
Sbjct: 65  AQFHAQVLRILAEVERAEILMSDRRGTVGGVLRVTAPGELGRLRIAPLVAAFQRRHPELI 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P Y+     P   
Sbjct: 125 VQLMLTDAIVDLLAHDIDVAVRIGS-LADSTMIARELAPSHRVLCASPSYVAAHGLPAEP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I  GD                  +     + L  N   +     + G+GIAL
Sbjct: 184 AELRAHRCIVMGDQPRAEWR----FDGAQGTVAVEVTAALLTNDGGAARTLALEGAGIAL 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V    D   LVR++     P+  ++  YP       +++AF +F+  + R
Sbjct: 240 KSIWDVGADLDAGRLVRVLPAFAAPAAPLHAVYPGGRHVPLRVRAFVDFLREQLR 294


>gi|205353853|ref|YP_002227654.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273634|emb|CAR38623.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628963|gb|EGE35306.1| putative LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 310

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 9   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 69  GVLFYQKGVNLLNAAKNLQDEVRSSHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDL 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 129 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARHPVS-S 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 187 LESLAQAEWIIHERLPTPLRWSVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 246

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   T K++AF +F+  +
Sbjct: 247 LLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVTTKVRAFIDFLRSQ 300


>gi|38704018|ref|NP_310535.2| transcriptional regulator LYSR-type [Escherichia coli O157:H7 str.
           Sakai]
 gi|157159337|ref|YP_001463099.1| LysR family transcriptional regulator [Escherichia coli E24377A]
 gi|170681592|ref|YP_001743447.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|189405089|ref|ZP_02813218.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|189406052|ref|ZP_02826045.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|193071305|ref|ZP_03052224.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|194439627|ref|ZP_03071699.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|208810425|ref|ZP_03252301.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|209395982|ref|YP_002270876.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217328689|ref|ZP_03444770.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|218554371|ref|YP_002387284.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|218699633|ref|YP_002407262.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|218705297|ref|YP_002412816.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|253773247|ref|YP_003036078.1| LysR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161858|ref|YP_003044966.1| putative DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|254793421|ref|YP_003078258.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|260855658|ref|YP_003229549.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O26:H11 str. 11368]
 gi|260868318|ref|YP_003234720.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O111:H- str. 11128]
 gi|293405296|ref|ZP_06649288.1| tartrate dehydrogenase/decarboxylase/D-malic enzyme regulator
           protein [Escherichia coli FVEC1412]
 gi|293410108|ref|ZP_06653684.1| conserved hypothetical protein [Escherichia coli B354]
 gi|297517045|ref|ZP_06935431.1| LysR family transcriptional regulator [Escherichia coli OP50]
 gi|298380938|ref|ZP_06990537.1| HTH-type transcriptional regulator yeaT [Escherichia coli FVEC1302]
 gi|300823145|ref|ZP_07103278.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300899037|ref|ZP_07117324.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300904662|ref|ZP_07122497.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300924864|ref|ZP_07140798.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300927876|ref|ZP_07143437.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300938857|ref|ZP_07153563.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|301305895|ref|ZP_07211978.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|301327556|ref|ZP_07220776.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|307314123|ref|ZP_07593735.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|309794175|ref|ZP_07688599.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|331663287|ref|ZP_08364197.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
 gi|331668487|ref|ZP_08369335.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331683301|ref|ZP_08383902.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
 gi|157081367|gb|ABV21075.1| transcriptional regulator, LysR family [Escherichia coli E24377A]
 gi|170519310|gb|ACB17488.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
 gi|189371986|gb|EDU90402.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|189376736|gb|EDU95152.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|192955400|gb|EDV85884.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|194421448|gb|EDX37463.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|208724941|gb|EDZ74648.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|209157382|gb|ACI34815.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217318036|gb|EEC26463.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|218361139|emb|CAQ98722.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|218369619|emb|CAR17388.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|218432394|emb|CAR13284.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|242377520|emb|CAQ32274.1| DmlR DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|253324291|gb|ACT28893.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973759|gb|ACT39430.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253977953|gb|ACT43623.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|254592821|gb|ACT72182.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|257754307|dbj|BAI25809.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O26:H11 str. 11368]
 gi|257764674|dbj|BAI36169.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O111:H- str. 11128]
 gi|284921718|emb|CBG34790.1| LysR-family transcriptional regulator [Escherichia coli 042]
 gi|291427504|gb|EFF00531.1| tartrate dehydrogenase/decarboxylase/D-malic enzyme regulator
           protein [Escherichia coli FVEC1412]
 gi|291470576|gb|EFF13060.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298278380|gb|EFI19894.1| HTH-type transcriptional regulator yeaT [Escherichia coli FVEC1302]
 gi|300357337|gb|EFJ73207.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300403412|gb|EFJ86950.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300418970|gb|EFK02281.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300456216|gb|EFK19709.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300464065|gb|EFK27558.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300524299|gb|EFK45368.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300838821|gb|EFK66581.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|300845866|gb|EFK73626.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|306906261|gb|EFN36778.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|308122080|gb|EFO59342.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|315061102|gb|ADT75429.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|315257390|gb|EFU37358.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|320188495|gb|EFW63157.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Escherichia coli O157:H7 str. EC1212]
 gi|320197978|gb|EFW72586.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Escherichia coli EC4100B]
 gi|323152960|gb|EFZ39229.1| hypothetical protein ECEPECA14_5043 [Escherichia coli EPECa14]
 gi|323175124|gb|EFZ60738.1| hypothetical protein ECLT68_0221 [Escherichia coli LT-68]
 gi|323180578|gb|EFZ66123.1| hypothetical protein ECOK1180_0567 [Escherichia coli 1180]
 gi|323186454|gb|EFZ71802.1| hypothetical protein ECOK1357_0224 [Escherichia coli 1357]
 gi|323378323|gb|ADX50591.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323948316|gb|EGB44304.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|323961853|gb|EGB57452.1| LysR substrate binding domain-containing protein [Escherichia coli
           H489]
 gi|323972694|gb|EGB67897.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
 gi|324118859|gb|EGC12748.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
 gi|326342174|gb|EGD65955.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Escherichia coli O157:H7 str. 1044]
 gi|326343724|gb|EGD67486.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Escherichia coli O157:H7 str. 1125]
 gi|331059086|gb|EGI31063.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA143]
 gi|331063681|gb|EGI35592.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA271]
 gi|331079516|gb|EGI50713.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
 gi|332089916|gb|EGI95016.1| hypothetical protein SB521682_2027 [Shigella boydii 5216-82]
 gi|332096424|gb|EGJ01421.1| hypothetical protein SB359474_1438 [Shigella boydii 3594-74]
          Length = 307

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLVIKERDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|293394781|ref|ZP_06639072.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422732|gb|EFE95970.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 327

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 142/298 (47%), Gaps = 9/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +L +F  V  +G+FT AA  L  S++ +S  I  LE+E+G+ L  R  R L+LT+ 
Sbjct: 31  LNLQRLAIFVAVVEAGNFTAAANTLGQSKAVVSFNIKQLESELGVSLLARSTRKLSLTDA 90

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++ +  +  + E    +++      SG LRI +T + G + +   L  F  L+P +
Sbjct: 91  GERFYQRSLRLLQEAENVLDDVRRDHHGLSGTLRITSTPEYGAHAVVPALAAFAQLHPRL 150

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQ +  ++  D+  +  D AIRL + +  S+    +L    +   A+P YL   ++ +S
Sbjct: 151 RIQHVSSSQHADLIAERFDVAIRLGR-MADSNHRAARLDDFAILPVASPDYLAR-QQIVS 208

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +   I    L                       + L  +S  +++ + + G+G+A
Sbjct: 209 LAQLAQAQWIVHSRLASPLSWQVVTPQRQAVLFDVETPAALTADSATALLAFALHGAGVA 268

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LLPD++ +       L +++ D   P+ ++Y  YP       K++AF +F+    R W
Sbjct: 269 LLPDWLARPALQRGQLCQLLPDHRFPTQSIYALYPNTRHVPEKVRAFIDFL----RSW 322


>gi|212637013|ref|YP_002313538.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212558497|gb|ACJ30951.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 302

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F +VA   SFT A+ +L++  S++S+ +S LE+    +L YR  R + LT +G 
Sbjct: 12  LKAMRSFVIVAERESFTEASRELNIVASAVSKHVSDLESHFSSQLLYRTTRAMHLTSEGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E+  ++++ +    E   + +G L I+            N  EF+  +PD++I
Sbjct: 72  YYLEQFKEIIARIDSLENIASERLQQVAGNLTISAPQGSAALGYLHNTSEFIKRHPDVRI 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +  N+ +++  +  D +IR+ + +  S+LI R+  +I +H  A+P Y+K    P   +
Sbjct: 132 SWLFLNRFVNMVEEGVDLSIRIGE-LADSNLIARQYTSIKVHFVASPDYIKLHGLPKHPK 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H  +            +N  A   +         +Q N      ++   G GIA L
Sbjct: 191 ELSQHQCVLDSSNRQPGRWRYNEAA---KESTITVKGYVQANDGEVAARFAADGHGIAYL 247

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P ++++   D+  L  I+ED       V   +P        L+A   F+  K
Sbjct: 248 PSFLMQQYLDSGELCPILEDYEFDETPVSLVFPANRLMNPALRALIEFLIEK 299


>gi|193066353|ref|ZP_03047402.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|260844143|ref|YP_003221921.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O103:H2 str. 12009]
 gi|192926001|gb|EDV80646.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|257759290|dbj|BAI30787.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O103:H2 str. 12009]
 gi|323158720|gb|EFZ44734.1| hypothetical protein ECE128010_5178 [Escherichia coli E128010]
          Length = 307

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLVIKERDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|300696736|ref|YP_003747397.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299073460|emb|CBJ52976.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           CFBP2957]
          Length = 293

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +A   +F  AA  L +S S++S  +  LE  +G++L  R  R ++LTE G +L 
Sbjct: 1   MTAFIAIAEQRTFRAAAGVLGVSPSALSHAMRNLEARLGVRLLNRTTRSVSLTEAGEQLL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R        LE    E+     +PSG +RI+ +    + +++  L +FL  YPDI ++ +
Sbjct: 61  RRVRPAVADLEDAVNEVASERNRPSGSIRISASESAARPIVRHVLPDFLAAYPDIHVECV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D + +DI  D  D  IRL + +    +  R    +   A A+P YL N   P + Q+L 
Sbjct: 121 VDTRLVDIVADGFDAGIRLLEDVPRDMIAVRFGPDMRFAAVASPAYLSNHAPPQAPQDLA 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I F             L    +         L + +    ++  + G GIA +P++
Sbjct: 181 QHRCIRFRFESGALYRWD--LEHRGKAAHINVDGPLTLGNLNLAVEAALAGIGIAWVPEH 238

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +V ++     LV ++         +   YP        L+ F        R+W
Sbjct: 239 LVAEHIAAGRLVHLLPQWSPSLSGLCLYYPANRHPPTALRLF----AQAVREW 287


>gi|260553721|ref|ZP_05825992.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260405121|gb|EEW98620.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 295

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L+ F  V ++ +FT AA  + ++QS++S+ I+ LE ++GIKL  R  R LTLT
Sbjct: 1   MKINLNDLKTFSEVVKTKNFTKAAAYMGVTQSAVSQSINNLEAQLGIKLLNRSTRSLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS+L  +  +    ++    ++      PSG +RI+      +  L   LK+ +  YP
Sbjct: 61  EAGSRLIELVGQNIENIDLGIEQISSMKDLPSGHVRISADAFTIKYYLWPKLKKLVKQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
           DI ++L  +N+ IDI+ +  D  +R+   ++   LI   +   I     A+P YL+    
Sbjct: 121 DISLELTSENRRIDIAKEGYDAGVRVGNLVEKD-LIAVPISKEIPFRLVASPEYLEKYGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+ +L KH  I    L    +  +      ++ +       L + S   ++   + G 
Sbjct: 180 PQSVDDLKKHKGIYIRLLTDNSLMAWE-FKDKNKSVFFRGPVQLVMTSLDEMLDAVLDGC 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +A LP ++VK   +   LV +++         Y  Y      +   K  ++
Sbjct: 239 AVAYLPYFLVKPALEEKKLVSLLDQHAVTLPPFYLFYTSRRLMSPAFKIVKD 290


>gi|257488037|ref|ZP_05642078.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|330985981|gb|EGH84084.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331008708|gb|EGH88764.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 299

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 128/288 (44%), Gaps = 5/288 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A  GSFT  AE   + +  ++R I  LE  + ++LF R  R + LT +G + +
Sbjct: 1   MQVFAKLAELGSFTKVAEATQIGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L  T      +     G+LRI       Q     +LK F   +PDI++ L 
Sbjct: 61  ERVKNNLADLAETTSMFDRNGSTLRGRLRIDIPAAFSQRSFMESLKGFTQAFPDIELALG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DCA+R+ + +  SSL+ R++    M   AAP YL+    P +++EL 
Sbjct: 121 VTDRTVDLVAEGIDCALRIGE-LPDSSLVVREIGRATMVTCAAPSYLQAFGTPETLEELA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  ++F          +++    D     PR   + VN   + +Q  + G GI   P  
Sbjct: 180 DHCGVSFLSGQSNRPLPWHFSLNGDDFPVLPR-GGITVNESNAYVQCGLAGFGILQAPGI 238

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            V+    +  LV ++E        V   YP       +++AF  ++  
Sbjct: 239 TVESFLASGELVEVLEAFRPLPRPVSVLYPSRTHLAPQVQAFVAWLKE 286


>gi|207728272|ref|YP_002256666.1| hypothetical protein RSMK04668 [Ralstonia solanacearum MolK2]
 gi|206591518|emb|CAQ57130.1| hypothetical protein RSMK04668 [Ralstonia solanacearum MolK2]
          Length = 284

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 129/290 (44%), Gaps = 11/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V ++  F  AAE + +  S++SR+I  LE  +G++L +R  R + LTE G    
Sbjct: 1   MALFVEVVKAKGFRSAAEAMGIPNSTLSRRIGTLEKAIGLRLLHRTTRKIELTEAGQLYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +      +L E   +PSG LR +  +D     L   + EF  LYP I     
Sbjct: 61  ERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFAGLYPGITFDFD 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +D+  +  D AIR+  P + S LI R L ++  H YA+P YL    EP    +L+
Sbjct: 121 LTPRRVDLVSEPFDVAIRMG-PSEDSQLIARPLASLTPHLYASPGYLDRSGEPHKPADLE 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  ++        ++D    ATV             +NS   I +  VL  GI L+P+ 
Sbjct: 180 RHECLSILKAGSWTLQDGKRTATVSVG------GRFTLNSVGMIRRLAVLDLGIVLMPEE 233

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IV D   +  L RI+      S  VY    E      K + F  F+  + 
Sbjct: 234 IVADELASGKLRRILPGWHGTSMPVYAIT-ETRLLPAKTQRFIEFLRARL 282


>gi|163858194|ref|YP_001632492.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261922|emb|CAP44224.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 302

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 125/287 (43%), Gaps = 6/287 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F       SFT  A+ L  S +++SR IS LE ++G+KL  R  R ++ T  G   ++  
Sbjct: 2   FVKTVELRSFTKTADALETSNATVSRIISKLEADLGVKLLERTTRRVSPTPDGLAFYQRC 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  +LE  + E+      P G LR+   +  G+  +   L  F   + ++ I + L +
Sbjct: 62  KLILDQLEEAKNEVTALRDTPRGTLRVVLPVSYGKLWIMPLLNSFAKRFAELTISVTLSD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +  D++ D  D A+ + +  ++  L+ RKL    +   AAP YL     P   Q+L +HN
Sbjct: 122 RLDDLTEDNFDVALSIGETTEA-RLVARKLRQSRIVTAAAPGYLAEWGTPSVPQDLAQHN 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + +     +    ++++              L V++  ++M     G GI   PDY+V 
Sbjct: 181 CLLYVRPGKRLKWLWDFVDASQAHHSVAVHGNLLVDNGEALMDAAAQGVGIIQAPDYVVL 240

Query: 251 DN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN--FIFL 292
                  LV ++ D       ++  YP + +   +++   +  F+  
Sbjct: 241 PQLQKGALVEVLGDYRPAGPAIWVLYPPSRQRASRVQMLLDELFVMA 287


>gi|254356872|ref|ZP_04973147.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|148025899|gb|EDK84022.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
          Length = 400

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 78  MDM-LDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 136

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    P
Sbjct: 137 ESGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNP 196

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 197 DVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTP 256

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L KH  +          E        D  +     +  Q N   ++      G G
Sbjct: 257 TTPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRG 316

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F + +
Sbjct: 317 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHL 369


>gi|254254158|ref|ZP_04947475.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124898803|gb|EAY70646.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 322

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 127/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAEIDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  +          E        +  + E + +  QVN   ++      G G
Sbjct: 180 QTPGDLPNHVCLRLDTPASPAGEWRLERGDGEETVYELQPAPFQVNVPDALCVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDLREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|238783694|ref|ZP_04627714.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           bercovieri ATCC 43970]
 gi|238715407|gb|EEQ07399.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           bercovieri ATCC 43970]
          Length = 298

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 120/287 (41%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++ ++R ++ +E   G++L +R  R L+LT  G     
Sbjct: 8   EVFVAIVERGSMIAAAESLAMSRAMVTRYLAQMEQWAGVRLLHRTTRKLSLTHAGEATLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +     +   S    G LRI+ +  LGQ+ L   + ++L  YP + + L +
Sbjct: 68  RCRRMLEFAQDMNAVVGPESGGLHGLLRISCSQSLGQSALVIAVTDYLRRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L T H    A+P YL     P +  +L  
Sbjct: 128 NNRAVNLVEERIDLALRITNEL-DPNLIARPLATCHSVVCASPAYLSAKGVPKNPSDLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                            L  N  + ++   + G+GI L P Y 
Sbjct: 187 HNCLTYSYFGKSLWH----FDQQGVKSSVAVGGNLSANESVVLLSGALEGAGITLQPSYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                    L++++ D    +  +Y  Y    +    L+   +F+  
Sbjct: 243 AAPYIARGELIKLLPDYQPQAMGIYGIYTSRRQMPATLRTMLDFLVE 289


>gi|310765154|gb|ADP10104.1| LysR-family transcriptional activator [Erwinia sp. Ejp617]
          Length = 292

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 17/289 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA +  L +SS+S++IS LE  +GI+L  R  R L LT  G 
Sbjct: 5   LQDMALFALVAECGSFTAAAVRAGLPKSSVSQRISQLEQALGIRLINRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + ++     PSG+LRI +   +G  LL      F   YPD+ +
Sbjct: 65  RYLVHCQEMLQASERAGMAIERLRDNPSGRLRITSPAGIGATLLARVNTAFQHKYPDVTL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++  D+     D A+R  +P Q SSLI R++        A+P YL +       +
Sbjct: 125 EVSISDEMCDLVQSRFDVALRTGRP-QDSSLIGRRIGYCQRLLVASPDYLADYPALAHPR 183

Query: 185 ELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +L  H  I        L+ +  E + WL                 ++ +   +  +   G
Sbjct: 184 QLSDHRCIAHRAWNEWLLKRNEEYYRWLL----------PPTHMTDNLVYARECALSSGG 233

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I LLP ++  +   LV+++ +       ++  YP    N+  L  F +F
Sbjct: 234 ITLLPRFLSGE--KLVQVLPEWEVEGNELWLVYPSRKLNSPALSRFVDF 280


>gi|238754640|ref|ZP_04615993.1| HTH-type transcriptional activator aaeR [Yersinia ruckeri ATCC
           29473]
 gi|238707099|gb|EEP99463.1| HTH-type transcriptional activator aaeR [Yersinia ruckeri ATCC
           29473]
          Length = 303

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 123/291 (42%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVACGSFTAAARQLGISVSSISQTVSKLENELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKAYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVG-TLQDSGLFCRRLGSMPMVVCAAKSYLAQHGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +     +    F   A                N   +++ +   G+GIA  
Sbjct: 183 DMVNFSWLEYSL---RADSSFELTAPEGISTQISPRGRFVTNDAQTMIHWLKAGAGIAYA 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P   V +     ++  +     +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVINEIKCGDIEVLFSHYHSEPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|330982423|gb|EGH80526.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 300

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 11/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  +ISR+++ LE ++G++L +R  R ++LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         + H  ET +  L+  +   SG LR+      GQ ++   L   +   P +
Sbjct: 61  GEVFLPHAKTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQENPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL    +P  
Sbjct: 121 SIDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCASPDYLARHGQPSI 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H  IT   +                P+          NS  ++   C  G G+A
Sbjct: 180 LDELRQHPCITLHAMPYWP------FIREGEPVAIRAQGAFSANSVEAVRTACKQGLGLA 233

Query: 243 LLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +L  + V+       ++    EDVI    +V    P   +   +++ F + +  + 
Sbjct: 234 MLTYWDVQQEIREGSLLQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLFVDRLEAEL 289


>gi|322832115|ref|YP_004212142.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167316|gb|ADW73015.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 310

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 135/299 (45%), Gaps = 10/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   LR++  V   GSF+  A +  +S S++SR IS LE  +  +L YR+ R ++ TE
Sbjct: 6   QINIQALRLYVAVLDQGSFSEVARREAMSPSTVSRVISQLEQALQTQLLYRNTRAVSPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L     +V  +L+   ++LQE   +P G +RI   +  GQ  L   L E    YP 
Sbjct: 66  SGKLLAGHARQVLAQLDLATLDLQEQDSEPGGLVRINAPVVFGQRHLAPWLHELSTRYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L+  +  ID   D  D  IR+   +  S+L  R L   +    A+P YL    +P 
Sbjct: 126 LNIELMQTDDFIDPLQDSVDLLIRIG-VMADSTLQARTLGHQNFRLAASPAYLARAGKPE 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H+ + F          F         +       L  N+  ++ Q  + G G+
Sbjct: 185 TPEDLASHSCLVFKGFAGPQRWYFRQPEQEWHSMTL--RGLLTSNNAETLTQAGIDGMGL 242

Query: 242 ALLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + P +++ D   +  LV ++E+          T+   YP + + + K++A  +F+  K
Sbjct: 243 VVFPTWLIGDALRDGRLVSVLENYQVSTSPEPQTISALYPNSRRPSIKVRAVIDFLLEK 301


>gi|331664673|ref|ZP_08365579.1| HTH-type transcriptional activator TtdR [Escherichia coli TA143]
 gi|331058604|gb|EGI30585.1| HTH-type transcriptional activator TtdR [Escherichia coli TA143]
          Length = 310

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+    P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPRPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LVR++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVRVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|221205391|ref|ZP_03578407.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175182|gb|EEE07613.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
          Length = 319

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 132/297 (44%), Gaps = 6/297 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + L
Sbjct: 1   MAMDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G +       +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   Y
Sbjct: 61  TDAGQRYLDRCQRILAYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P + ++L L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK   
Sbjct: 121 PSVAVELTLSQHVPDIIDEGYDVSLQLSTAELPDSGLVSQRLGEMHSVLCASPAYLKERG 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++ +L+ H  +     I    + ++      R   E  +   QVN   ++      G
Sbjct: 181 TPRTVSDLEGHACLQIVTPI-FPRDRWHLDGPNGRETFELPLPDFQVNIADALGAGLRAG 239

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  LP         +  LVR++ +      TVY  Y        K++ F +F+  
Sbjct: 240 LGIGALPMSTALPAFASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 296


>gi|152981625|ref|YP_001354995.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281702|gb|ABR90112.1| transcriptional regulator, lysR family [Janthinobacterium sp.
           Marseille]
          Length = 301

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 124/296 (41%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L  R  R  ++TE G
Sbjct: 3   DLNDLYFFVQVVDHGGFAPAGRALGIPKSKLSRRIALLEERLGVRLIQRTTRQFSVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  Q  +  +  +P G +R++  I L    +   L +F+ L+P + 
Sbjct: 63  QTYYEHCKAMLVEAEAAQDVIDVTRAEPRGVVRLSCPITLLHAHVSSMLADFMALHPHVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  PIQ S L+ R L        A+P        P +
Sbjct: 123 VHLEATNRRVDVVAEAMDIAIRVRPPPIQDSDLVMRVLSDRGQCLVASPALFNKHALPQT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             ++ +   +  G   P+    +N        +             +++    + G GI 
Sbjct: 183 PADIAEWPSLALG--TPQQTHVWNLFGPDGAHVSLHHHPRFVTGDMMALRDAALAGVGIV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP  ++++      L+ ++ D       V+  +P        ++A  +++  + +
Sbjct: 241 QLPRMMLREQLAAGTLLSLLPDWAPRREIVHVVFPSRRGVLPSVRALIDYLAERFQ 296


>gi|149922891|ref|ZP_01911313.1| Transcriptional regulator [Plesiocystis pacifica SIR-1]
 gi|149816279|gb|EDM75784.1| Transcriptional regulator [Plesiocystis pacifica SIR-1]
          Length = 309

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + VF  V R  SFT A + + L  S++SR+++ LE  +G KL +R  R + LT+ G 
Sbjct: 8   LNDVVVFTEVVRQSSFTRAGKVVGLPASAVSRRVARLEAALGFKLLHRTTRSVGLTDAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  T+ + H +      +QE    P G LR+    D    ++   +  F+  +P++++
Sbjct: 68  VYYERTAHIAHDVLDAARAVQEYLDTPKGLLRVTAPPD-DGGVIWAMISGFVRDHPEVEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I   + +D+     D A+R   P  S++L  R+LV       A+P YL+    P   +
Sbjct: 127 EIIHTLEYVDLIEAGVDVALRGGSPPDSTALTARRLVDSRFVLVASPRYLERRGTPTRPE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H+ +     +P     F+ L   D P+     + ++ NS  +  +  + G GIA +
Sbjct: 187 ELAEHDCVAMDTWVPNA---FSSLMGPDGPVSVDFRNRVRSNSQETARKAALDGFGIAPM 243

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +       ++  LV ++   +    T +  YP A   +   +AF   + 
Sbjct: 244 VEMTCWRQLESGALVEVLPGALPWPATFWAVYPVARSKSAATRAFVEHLV 293


>gi|188533695|ref|YP_001907492.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis
           Et1/99]
 gi|188028737|emb|CAO96599.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis
           Et1/99]
          Length = 319

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 135/301 (44%), Gaps = 12/301 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
                +L VF  +AR  +F+  A +L +S S++S  I  LE  +G++LF R  R + LTE
Sbjct: 3   RITLPELSVFISLARQLNFSATARELGVSTSALSHSIRKLEARMGMQLFTRTTRSVALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L R  +   ++LE    E+  S  +PSG +RI+      + L+Q  L +F   YPD
Sbjct: 63  AGAQLFRRAAPAINELEQAIHEVNSSRDRPSGTIRISAAEAGARPLIQNMLPDFFKTYPD 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCRE 179
           I ++ ++D + +DI  D  +  IRL + +    ++        I + A A+P YL     
Sbjct: 123 IHVEFVVDTRYVDIVADGFNAGIRLLEDVP-LDMVAIPFGPETIRIAAVASPDYLAKHGC 181

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S  +L  H  I F  L          L    R         + + +   ++   + G 
Sbjct: 182 PASPDDLRNHQCIRFRFLSGALYHWD--LEYRGRSTNVNVNGPMTLGNTNLMVDAALAGI 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA +PDY V     +  L++++ +       +   YP        LK F + +    R+
Sbjct: 240 GIAWVPDYHVHGHLRDGRLIQVLPEWSPSVSRICLYYPVNHHQPLALKLFCDAL----RE 295

Query: 297 W 297
           W
Sbjct: 296 W 296


>gi|330878634|gb|EGH12783.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 298

 Score =  236 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 8   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +K +L  YP   + L++
Sbjct: 68  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVKAYLQRYPGTSVDLLI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P S QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQL-DPNVIARPLGHCDSVVCASPAYLAMHGTPASPQELAA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E          P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 187 HNCLTYSYFGKSLWE----FTRQQSPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+ ++ D    +  ++  Y      +  L+   +F+  
Sbjct: 243 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFLTE 289


>gi|221212255|ref|ZP_03585233.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168340|gb|EEE00809.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 319

 Score =  236 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 132/297 (44%), Gaps = 6/297 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + L
Sbjct: 1   MAMDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G +       +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   Y
Sbjct: 61  TDAGQRYLDRCQRILAYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P + ++L L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK   
Sbjct: 121 PSVAVELTLSQHVPDIIDEGYDVSLQLSTAELPDSGLVSQRLGEMHSVLCASPAYLKERG 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++ +L+ H  +     I    + ++      R   E  +   QVN   ++      G
Sbjct: 181 TPRTVSDLEGHACLQIVTPI-FPRDRWHLDGPNGRETFELPLPDFQVNIADALGAGLRAG 239

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  LP         +  LVR++ +      TVY  Y        K++ F +F+  
Sbjct: 240 LGIGALPMSTALPAFASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 296


>gi|261210603|ref|ZP_05924896.1| transcriptional regulator LysR family [Vibrio sp. RC341]
 gi|260840388|gb|EEX66959.1| transcriptional regulator LysR family [Vibrio sp. RC341]
          Length = 315

 Score =  236 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 127/289 (43%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  
Sbjct: 8   QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +   Q E+++   + +G +R+  +   G   +   L++    YP++++++
Sbjct: 68  YSQCRELLTIVTNAQSEMEDQRDEVAGLIRLGLSQSFGTLHVLPALEQLRQQYPELKVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++        A+  YL     P    EL
Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASAEYLLRYGTPTQPVEL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + +        +   W  + D      ++S    V+   ++    V G GIA L 
Sbjct: 187 MEHNCLIYRS---WERDYTRWSFSQDGQSQTVKVSGNYSVDLAEAVRDAAVAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y+++D      L++++ +         Y  YP       K  A   FI
Sbjct: 244 TYLLRDEFRTGQLIQLLPEWCANQQMPFYAVYPSRQHMPKKTSAVIEFI 292


>gi|187926334|ref|YP_001892679.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241665821|ref|YP_002984180.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728088|gb|ACD29252.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240867848|gb|ACS65508.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 315

 Score =  236 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 126/296 (42%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LET +G++L  R  R + +T+ G
Sbjct: 3   DLNDLVLFASVVTHGSFSGAARALGIPKSRVSRRVADLETRLGVRLLQRSTRAVHVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +           + +  KPSG+LR++  + +    +   L +FL   PD++
Sbjct: 63  SAFFTHCESMTQAARAAFEVAEHAGEKPSGRLRVSCPVGVAHVFIAPVLSKFLRAQPDVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L + N+ +D+  D  D A+R+R  +  S+L+ R          A+P ++       + 
Sbjct: 123 LELDVTNRRVDVIGDGYDVALRVRSTLDDSNLVVRSFGVSDQVLVASPSFVAEHGPFETP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +     +    +     E   W  T      +       L  +    + Q  + G G+
Sbjct: 183 ESMRG---VMGVGVDGAAGERTRWRLTAPEGGAVDIEYTPALVTDDLYLMGQTALAGIGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LP  +  +   +  LV ++ +   P    +  +P        ++ F  F+  + 
Sbjct: 240 AQLPFNLCAEPVRDGRLVVLLPEYRLPVHQFHAVFPSRRGLVPAVRVFIEFLAEEL 295


>gi|76818993|ref|YP_337480.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|76583466|gb|ABA52940.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
          Length = 354

 Score =  236 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 124/290 (42%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G
Sbjct: 21  TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAG 80

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 81  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVS 140

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 141 IELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTP 200

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 201 RDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 258

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y   ++    NLVR++         VY  YP       K++ +   +
Sbjct: 259 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEAL 308


>gi|28901444|ref|NP_801099.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308094987|ref|ZP_05892639.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308095347|ref|ZP_05905163.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308125561|ref|ZP_05775866.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|28809991|dbj|BAC62932.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085408|gb|EFO35103.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092638|gb|EFO42333.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308112321|gb|EFO49861.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 307

 Score =  236 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G 
Sbjct: 4   LNDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I
Sbjct: 64  LFLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+     D AIR  +P   S+L+   L  +      A+P Y+    E  S 
Sbjct: 124 KLELSDSLTDMYTKPVDIAIRYGEP-ADSNLVVLALCGSNERILCASPEYVATHPELTSP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L +HN + +        +   W  T D    +  +S  L  N      +  + G GIA
Sbjct: 183 ADLTQHNCLCYMVADSVYNK---WTLTRDGEKEQVVVSGNLMSNDSDLPHRLAIKGKGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 +  +     LVR++ +  +    +Y    +    T  ++ FR+FI  K
Sbjct: 240 NKSLMDISRDLIEGRLVRVLPEWDSGPVPLYMVCADRRLLTPTIRTFRDFIQQK 293


>gi|330987281|gb|EGH85384.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 300

 Score =  236 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 127/297 (42%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  +ISR+++ LE ++G++LF+R  R ++LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    E  +  L+  +   SG LR+      GQ ++   L   +L  P +
Sbjct: 61  GEVFLPHAKTILEANEAARTTLKADAGSASGVLRVTAPSVFGQTVIMPLLPALMLENPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI+    D AIR+   I+ S+L+ R L         +P YL    +P  
Sbjct: 121 SIDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCVSPDYLARHGKPAL 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++EL  H  I    +                PI          NS  ++   C  G G+A
Sbjct: 180 LEELRHHPCIALHAMPWWP------FTRNGEPITIRAQGPFSANSVEAVRTACKQGMGLA 233

Query: 243 LLPDYIVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +L  + V+      +L ++  ED +    +V    P   +   +++ F + +    +
Sbjct: 234 MLTYWDVRQEINEGSLQQVDFEDAMPEQLSVTAVLPTRQRVPHRVRQFIDRLEAALK 290


>gi|330950453|gb|EGH50713.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 294

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  +ISR+++ LE ++G++L +R  R ++LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         + H  ET +  L+  + K SG LR+      GQ ++   L   +   P +
Sbjct: 61  GEVFLPHAKTMLHTSETARATLKGDTGKASGVLRVTAPSVFGQTVIMPLLPVLMQENPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL    +P  
Sbjct: 121 SVDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCASPDYLMRRGQPSV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H  IT   +                P+          NS  ++   C  G G+A
Sbjct: 180 LDELRQHPCITLHAMPYWT------FIREGGPVAIRAQGTFSANSVEAVRTACKQGLGLA 233

Query: 243 LLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +L  + V+       ++    EDVI    +V    P   +   +++ F + +  + +
Sbjct: 234 MLTYWDVQQEIRAGSLLQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLFVDRLEAELK 290


>gi|169795846|ref|YP_001713639.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|184158238|ref|YP_001846577.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213157462|ref|YP_002319507.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483331|ref|YP_002325542.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301347894|ref|ZP_07228635.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301511568|ref|ZP_07236805.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301597775|ref|ZP_07242783.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|169148773|emb|CAM86639.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|183209832|gb|ACC57230.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213056622|gb|ACJ41524.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986906|gb|ACJ57205.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|322508561|gb|ADX04015.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323518175|gb|ADX92556.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
          Length = 308

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 128/297 (43%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V + G F  A+ ++ + +S +SR+I  LE  +G++L  R+ R   +T
Sbjct: 1   MKTDLNDLYYFVKVVQHGGFASASREIDIPKSKLSRRILLLEERLGVRLINRNTRQFDVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +     +    E  Q  ++ +  +P G +R++       + +   + +F+ LYP
Sbjct: 61  ELGREYYHQCQNMILGAEAAQQVIERNQAEPCGVIRVSCPPAWLYDHIADMISKFMRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + I L + NK+ID+  D  D A+R+R  P++ S  + +               ++    
Sbjct: 121 QVNIHLEVTNKNIDLLNDGIDIALRIRFPPLEDSDQVMKIFAKNPQCIVGHCELVQQHGM 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L  +  I  G+   K +    +     +         L VN  + +    + G 
Sbjct: 181 PETPLDLCGYPSIGLGNSEQKSIWTL-YSRENGKIEKVIHTPRLIVNDMIGVRDAVLRGV 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIA LP  ++    +   L+ +M +    +  ++  YP        ++A  +F+  +
Sbjct: 240 GIAQLPFALIYKEIERGELINLMPNWELKNSIMHAVYPSRKGLLPSVRALLDFLSEE 296


>gi|78061343|ref|YP_371251.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969228|gb|ABB10607.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 291

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 127/292 (43%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V ++  F  AAE L +  S++SR+I  LE  +G++L +R  R + LTE G 
Sbjct: 4   LNDMALFVEVVKAKGFRSAAETLGMPNSTLSRRIGALEKAIGLRLLHRTTRRIELTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +      +L     +P+G LR +  +D    +L   L EF   +P +  
Sbjct: 64  LYFERCKRIVDEARLAHEQLGGLLAEPTGVLRASFPVDFAVVILAPLLVEFANRHPKLSF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L ++ +D+  +  D AIR+  P + S LI R++ T+  + YA+P YL    EP   +
Sbjct: 124 DYELTSRRVDLVSEPFDVAIRMG-PSEDSQLIARRIATLRNYLYASPGYLARAGEPQQPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +         + D        R +  P  S    NS   + +   L +GI +L
Sbjct: 183 DLATHACLGLQRSGSWTLHDGT------RSVAVPVSSRFGANSVGMLRRLATLDAGIIVL 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + IV D+     L R+M +       VY    E      K + F  F+  +
Sbjct: 237 SEAIVADDLAAGRLRRVMPEWEGEPIPVYAMT-ETRLLPAKTQHFIEFLRER 287


>gi|77457164|ref|YP_346669.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381167|gb|ABA72680.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 322

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAEAGSFTAAAVQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  E+  +P+G+L++ T   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILAYVEEAEAEASEAHARPAGQLKVHTMTGIGQHFVIDAIARYRKTHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + N+  D+  +  D +I L + +  S  + ++L   +    A+P Y+K      
Sbjct: 121 VTFDLTMANRVPDLLDEGYDVSIVLARELPDSGFVSQRLGITYSIVCASPAYVKANGCAQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  +     +   +E + +     + +     S   VNS  ++      G G+
Sbjct: 181 KPSDLLNHACLRLVSPVIP-LEKWAFDGPDGQEMVTINSSPFLVNSADAMKSAITSGMGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP Y   +   N +LVR+M +  +    +Y  YP       K+K +  ++
Sbjct: 240 GVLPVYAAIEGLRNGSLVRVMPNYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|107026392|ref|YP_623903.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692419|ref|YP_837952.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|254248467|ref|ZP_04941787.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|105895766|gb|ABF78930.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650419|gb|ABK11059.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|124874968|gb|EAY64958.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 315

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 127/303 (41%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   +PD
Sbjct: 61  AGESYLRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPALTRYHAQFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P 
Sbjct: 121 VSIELSLSQRMPDLFDGTSDMAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGVPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +T         E    L   D          +Q N+  S+      G GI
Sbjct: 181 RPQDLAAHACLTLCTPAFPTHEWV--LEGPDGVEQIHVAGPVQTNTAESLALAIRDGIGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----- 293
            +LP Y   D   +  LVR++   I     VY  YP       K++ +   +  +     
Sbjct: 239 GMLPLYSAIDALRDGTLVRVLPAHILQKMNVYALYPSRRFVDAKVRTWVEMLRAQVPTMI 298

Query: 294 ARD 296
           ARD
Sbjct: 299 ARD 301


>gi|260549466|ref|ZP_05823685.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407575|gb|EEX01049.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 295

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L+ F  V ++ +FT AA  + ++QS++S+ I+ LE ++GIKL  R  R LTLT
Sbjct: 1   MKINLNDLKTFSEVVKTKNFTKAAAYMGVTQSAVSQSINNLEAQLGIKLLNRSTRSLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS+L  +  +    ++    ++      PSG +RI+      +  L   LK+ +  YP
Sbjct: 61  EAGSRLIELVGQNIENIDLGVEQISSMKDLPSGHVRISADAFTIKYYLWPKLKKLVKQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
           DI ++L  +N+ IDI+ +  D  +R+   ++   LI   +   I     A+P YL     
Sbjct: 121 DISLELTSENRRIDIAKEGYDAGVRVGNLVEKD-LIAVPISKEIPFRLVASPEYLDKYGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P SI +L KH  I    L    +  +      ++ +       L + S   +    + G 
Sbjct: 180 PKSIDDLKKHKGIYIRLLTDNSLMAWE-FKDKNKSVFFRGPVQLVMTSLDEMFDAVLDGC 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            IA LP ++VK   ++  LV ++E         Y  Y      +   K  ++
Sbjct: 239 AIAYLPYFLVKPALEDKKLVSLLEQHAVTLPPFYLFYTSRRLMSPAFKIVKD 290


>gi|163741971|ref|ZP_02149360.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384692|gb|EDQ09072.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 293

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 134/296 (45%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L++F ++        A  ++ LS ++++ +++ LE   G +L  R  R ++LT++
Sbjct: 1   MLIENLKLFLLIVEKRGLAAAGREVGLSPATVTERLAALEAHYGARLLTRTTRSISLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +  + E T+  ++    K SG + ++   DLG+  L   L +F+  +P+I
Sbjct: 61  GRELVTGARRILAETEETEARIKLGVEKISGTIHMSAPSDLGRTQLAPLLDQFMAEHPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  ID+     D A+R  + +  S++  RKL T      AAP YLK    P+ 
Sbjct: 121 AIDLTLSDGIIDLVGQGIDLALRFGE-LSDSTMKSRKLGTNRRIFCAAPDYLKRNGTPMH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             +L  HN +           D  W   +D  +   R+   ++ N    I ++C+ G GI
Sbjct: 180 PDDLGHHNCLIMRF---GANTDQGWAFVIDGQMKTQRVFGNRIANDGGLIRKWCLGGHGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A   ++ ++ +    +LV ++E        +   YP       +++   +F+  + 
Sbjct: 237 ARKSEWDIRADLAKGDLVEVLESFSPEPNALQVVYPAGAVQPRRVRTLMDFLVARL 292


>gi|163746312|ref|ZP_02153670.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380197|gb|EDQ04608.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 302

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 138/301 (45%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+ +D +R F  V   GS + AA    +S +  S +I+ LE  +G++LF R  R L+ T
Sbjct: 1   MSY-FDNIRTFVRVYELGSMSAAARDQRVSPAVASARITQLEGHLGVRLFQRTTRSLSAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +    ++   +   +  +++ +  P G L +A  + +G+ L+  ++ EF   YP
Sbjct: 60  EQGRIFYDGACKILASVAEAEAGIEDVTDNPRGTLHVAAPLGVGRRLIAPHVPEFAETYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L L ++ +D++ +  D A  L +P + S+L  RK+        A+P Y+     P
Sbjct: 120 LVDVRLRLSDRKLDLTAEGLDVAFFLGRP-EDSTLRIRKVADCERVLCASPAYVAAHGHP 178

Query: 181 LSIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S  E+D  +HN +      P   E    L   +           + +    +  + + G
Sbjct: 179 RSGAEIDRGQHNCLNL--RFPGATEFQWQLQGPEGAAKYDVRGRFESDDGDVLTDWALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +GIA+ P + + ++     LVR++ED       +   Y        K + F +F+  +  
Sbjct: 237 AGIAMKPLFEIAEHLRSGALVRVVEDTPPLPVQMACLYTHRRHQDPKTRLFMDFMIARME 296

Query: 296 D 296
           D
Sbjct: 297 D 297


>gi|320201970|gb|EFW76545.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           EC4100B]
          Length = 310

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G + +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGHSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|254247303|ref|ZP_04940624.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124872079|gb|EAY63795.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 295

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 132/287 (45%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R +  +E  +G +L  R  R L+LT+ G    
Sbjct: 7   MRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAGHLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  +     +P G L+IA  +  G ++L   +  F + +P I  ++ 
Sbjct: 67  AQIRHVIDEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVPEVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D  + L + I +++L++R L  +     AAP Y++    P   Q+L 
Sbjct: 127 IVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLRQLVCAAPQYVERHGTPAHPQDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F          F+   T  R    P  S    N+   I  + + G GIA+LPD+
Sbjct: 187 SHACLAFHADFMGEYLSFDHDQT--RITVRPNKSA-SSNNVGLIRNWALSGMGIAVLPDF 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +VK   D+  L+ ++      +  +   YP       K + F + + 
Sbjct: 244 LVKSDLDDGRLLALLPGYRLEALEMNVAYPSRRHFPRKARLFVDHLI 290


>gi|254225139|ref|ZP_04918752.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125622238|gb|EAZ50559.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 313

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G 
Sbjct: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ +
Sbjct: 64  IFLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L ++  D+  +  D AIR  +P   S+L+   L         A+P YL      L  
Sbjct: 124 KLDLSDRLTDMYANPVDIAIRYGQP-ADSNLVAMLLCDSNERVLCASPEYLTAHPPILHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + F  ++   + +   L+                N    + +  V G GIA 
Sbjct: 183 DDLQHHNCLCF--MLADTLHNKWILSRNGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +     +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K
Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREK 293


>gi|209694507|ref|YP_002262435.1| transcriptional regulator, LysR family [Aliivibrio salmonicida
           LFI1238]
 gi|208008458|emb|CAQ78624.1| transcriptional regulator, LysR family [Aliivibrio salmonicida
           LFI1238]
          Length = 305

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 127/307 (41%), Gaps = 17/307 (5%)

Query: 1   MSFD-----WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M  +        +  F  V  SGSF+ AA  L ++ S +SRQ+S LE  + +KL  R  R
Sbjct: 1   MDINKLITLLPDMAAFVTVVDSGSFSKAAIILDMTPSGVSRQVSRLEKALQVKLLERTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
              LT  G   +     +    +        ++ K  G+LRIAT    G  +LQ  L+ F
Sbjct: 61  KQILTVAGQDTYNYCKNIVDNAQEVVNVSDSNNNKIEGELRIATPKAFGNKVLQPLLRIF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           +  YP I +++ + ++  D   D  D   +L    Q  +L+ +KL  + +   A+P YLK
Sbjct: 121 VHHYPHITLKIKVTDQPCDPIHDNLDLIFKLTNSPQ-ENLVAKKLGDVDLILCASPEYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQY 234
               P    EL  ++ +  G+       D  WL           +     VN     +  
Sbjct: 180 QKGIPNHPMELSAYDCLYLGE----TQHDNQWLFEKGNECLTMTVNGRFIVNHTEMRLDA 235

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRN 288
                GI + PD++V+++     L+ +M D       +  +   +  +     +L+ F +
Sbjct: 236 VKHHLGIGVFPDFVVREDLTHGKLIEVMPDWTLQGNYTGEIIMQFLRSNHMPNRLRVFID 295

Query: 289 FIFLKAR 295
           F+  + +
Sbjct: 296 FMVQQFK 302


>gi|309781251|ref|ZP_07675988.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308920072|gb|EFP65732.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 298

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 145/301 (48%), Gaps = 11/301 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L+LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLDTTLLSRTTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  + ++     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGATFLAQARRILAAVDEAEEQIALRRQQPAGRLRVNAAMPFMLHVVAPLVPDFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  ++  ID+  +  D AIR+   ++ S+L  R L T  +   A+P YLK    P
Sbjct: 121 QIELELNTNDLIIDLLEEDTDVAIRIG-TLRDSTLRARLLGTRRLRVLASPAYLKTHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + +L KH L+ F  + P+ +  +       DR   EP    L+ +S  ++ Q  + G+
Sbjct: 180 RHVDDLQKHALLGF--VQPESLNQWPLRGPYGDRLRIEP---TLKASSGETLRQLALQGA 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI  L D+I  ++    +LV+++ D        ++  Y    +   ++  F +F+  +  
Sbjct: 235 GIVCLADFITVEDRRTGDLVQVLSDATVEVLQPIHAVYYRNTQLASRIACFLDFLEARLA 294

Query: 296 D 296
           D
Sbjct: 295 D 295


>gi|237799694|ref|ZP_04588155.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022549|gb|EGI02606.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 298

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 146/301 (48%), Gaps = 10/301 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + +++F  V   GS+T AAE L++ + ++S+ I  LE E+G++L +R  R +  T
Sbjct: 1   MNL-IEAMQMFVAVVDQGSYTKAAEALNVHRPAVSKLIQNLEHELGVQLLHRTTRRVNTT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G + +  + ++  +L  T  EL   +  P GKLRI     LG  ++   L EF+  YP
Sbjct: 60  PAGDEFYERSLKLLSELAETL-ELFSPTRAPRGKLRIDMQTVLGHAVIIPRLPEFMERYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L   +   D+  D  DC++RL   +  SSLI +++  + +   AAP Y+K    P
Sbjct: 119 GLEISLGASDNLNDLIADGIDCSVRLGD-LDDSSLIAKRIGEVALVTCAAPAYIKKHGLP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H  + F     + +  + + A   + I     S + V++  +++   + G G
Sbjct: 178 DTLDDLQAHLAVNFMVEQRRQIMPWRFRAN-GKTINVKMRSGIVVDNAEALLYCALAGIG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKA 294
           +       +K   D+  L+ ++ DV     TV   +P+    +  ++ F  +   +F + 
Sbjct: 237 MVQGLRPALKRYIDSGRLIEVLPDVSVEPKTVSVLFPDRRHLSPNVRVFVEWVSALFEEK 296

Query: 295 R 295
           R
Sbjct: 297 R 297


>gi|326405559|ref|YP_004285641.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325052421|dbj|BAJ82759.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 313

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 125/296 (42%), Gaps = 11/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  VA  GSF+  A   + SQ  ISRQI+ LE ++G++L  R  R L+LTE
Sbjct: 1   MDQLSLINTFIRVAERGSFSAVARDFNTSQPVISRQIAALEDQLGVRLIQRTTRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V   ++     +  +   P+G++R+     +G   L   L EF   +P+
Sbjct: 61  DGQTYLEHAKAVVDAMDAANASVGSARKTPTGQVRLGVPTAVGLY-LAARLPEFFARHPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L + +   D+  +  D  I + +  Q+S +I R L T      A+P Y+     P 
Sbjct: 120 ISLDLKMRDGAFDLIEEGLDLVISIAEATQAS-VITRVLGTATSVLVASPAYVAARGAPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           + ++L KH  I +     +   D  W    D       +     V+S  ++ +    G G
Sbjct: 179 TPRDLLKHECIVYT----RPGADREWRFARDGVEESVNVQGRFHVDSSEAVRRAARAGLG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IALLP     D+     L+ +++  +     ++   P         +A  +F+  +
Sbjct: 235 IALLPRLTTIDDVAAGRLITVLDAFVPMQVKIHAILPSRRYVPACTRAILDFLREE 290


>gi|295699276|ref|YP_003607169.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438489|gb|ADG17658.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 336

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 12/295 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTAAAQSLNSTTGAMSRAVSELEAHLRTRLLNRSTRRLALTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  + + ++   ++  + E   +  +P+G LR+ +   +GQ+ +   +  +  LYPD
Sbjct: 61  AGERYLKRSQQILADVDIAEEEASCAHERPTGALRMHSFASIGQHYVLPAISRYRELYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+    AD A+     + +S L+   L T      A+P Y++    P 
Sbjct: 121 VTVELTLSQRMPDLFEGSADVAVIGASMLPNSDLVSFPLGTTFSILCASPAYVRAHGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
              +L  H  +          E      T+D P G   +     + VN   S++     G
Sbjct: 181 EPGDLAHHECLILHTPAFPPHEW-----TLDGPNGSELMEVDGPVHVNIAESLIVAIREG 235

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI ++P Y       +  LVR++ +      TVY  YP       K + +  F+
Sbjct: 236 MGIGMVPLYAAISGLRDGTLVRVLPEYTLQKTTVYALYPSRKFIDAKTRTWVEFL 290


>gi|254038228|ref|ZP_04872286.1| transcriptional activator TtdR [Escherichia sp. 1_1_43]
 gi|226839852|gb|EEH71873.1| transcriptional activator TtdR [Escherichia sp. 1_1_43]
          Length = 310

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEVVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|218529142|ref|YP_002419958.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|254559964|ref|YP_003067059.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|218521445|gb|ACK82030.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
 gi|254267242|emb|CAX23074.1| Putative transcriptional regulator, LysR family [Methylobacterium
           extorquens DM4]
          Length = 297

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 126/293 (43%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA+ GSFT AA++L ++QS++S  ++ LE  +G++L  R  R ++ TE G
Sbjct: 5   NMTDLLSFATVAKEGSFTRAAKRLGVTQSALSHAMNNLEARLGLQLLNRSTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R     + ++E     L     KP+G +RI       + +L   L+  L  YPDI 
Sbjct: 65  ERLLRAVGPQFEQIEVELTALTGMRDKPAGNIRITAPEHAVETVLWPALQRMLPDYPDIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++  +   DI  +  D  +R+ + ++   +       + M    AP YLK    P   
Sbjct: 125 VEVVTSDARTDIVAERFDAGVRVGEYVEKDMVAVCIAPPMRMAVVGAPAYLKGRSRPRGP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I  G +    +  +       + +       L + S   I    + G G+A 
Sbjct: 185 EDLTGHRCINLGRVSRGDLFPWE-FEKAGKEVNVRVEGQLALTSLRVIRNAALAGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP+  V  +     LVR+++D   P    +  YP   +           +  +
Sbjct: 244 LPEEKVLADVAEGRLVRVLKDWCEPFPGYHLYYPSRRQPAPAFTVLLEALRHR 296


>gi|311280054|ref|YP_003942285.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308749249|gb|ADO49001.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 302

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 122/297 (41%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +    F  V   G F  A   L + +S +SR+I+ LE  +G++L  R  R  ++T
Sbjct: 1   MMQDLNDFAWFVQVVDHGGFAAAGRALDVPKSRLSRRIAQLEERLGVRLIQRTTRQFSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++    +  + +  Q  +     +P G +++   + L    +   L +FL  YP
Sbjct: 61  EVGQTFYQHCKAMMIEADAAQEAIAALQAEPRGTVKLTCPVTLLHVHVGAMLAKFLAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + +QL   N+ +D+  +  D AIR+R +P   S L+ R L        A+P  +    E
Sbjct: 121 GVNLQLEATNRRVDVVAEGVDVAIRVRPRPFDDSDLVMRVLADRAHCLVASPSLIAAMGE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S  EL +   ++      K +  +                 L     L++ +  + G 
Sbjct: 181 PSSPAELGRWPGLSIA--AGKHLHQWALHGPDGARAEVHFTPRLVTTDMLALREAAIAGI 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  LP  +V++      L  +++        ++  YP        ++A  +F+  +
Sbjct: 239 GIVQLPLLMVREQLARGELRAVLKAWEPRREVIHAVYPSRRGLLPAVRALVDFLTEE 295


>gi|207722333|ref|YP_002252769.1| hypothetical protein RSMK04930 [Ralstonia solanacearum MolK2]
 gi|206587510|emb|CAQ18092.1| hypothetical protein RSMK04930 [Ralstonia solanacearum MolK2]
          Length = 301

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L  F  +A   +F  AA  L +S S++S  +  LE  +G++L  R  R ++LTE G 
Sbjct: 6   LSELTAFIAIAEQRTFRAAAGMLGVSPSALSHAMRNLEARLGVRLLNRTTRSVSLTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R        LE    E+     +PSG +RI+ +    + +++  L +FL  YPDI +
Sbjct: 66  QLLRRVRPAVADLEDAVNEVASERNRPSGSIRISASESAARPIVRHVLPDFLAAYPDIHV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + ++D + +DI  D  D  IRL + +    +  R    +   A A+P YL N   P +  
Sbjct: 126 ECVVDTRLVDIVADGFDAGIRLLEDVPRDMIAVRFGPDMRFAAVASPAYLSNHAPPQAPH 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I F             L    +         L + +    ++  + G GIA +
Sbjct: 186 DLAQHRCIRFRFESGALYRWD--LEHRGKAAHVNVDGPLTLGNLNLAVEAALAGIGIAWV 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P+ +V ++     LV ++         +   YP        L+ F        R+W
Sbjct: 244 PENLVAEHIATGRLVHLLPQWSPSLSGLCLYYPANRHPPTALRLF----AQAVREW 295


>gi|34496737|ref|NP_900952.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34102592|gb|AAQ58957.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 308

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 131/294 (44%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA  GSF  AA +L LSQ ++S+ ++ LE  +   L +R +R L LT  G
Sbjct: 6   DLEAWAIFAKVAECGSFARAAAELALSQGTVSKAVTRLEARMKTTLLHRTSRRLALTAAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  + ++ E S    G++R+A  +  G + L   L EF+  +P+++
Sbjct: 66  DAALERAARILAEGEAVEADVAEQSGSLRGRVRVAAPMSFGISHLAPLLPEFMARHPEVE 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +     ++ +D+     D A+R+  P   SSL+ R+L  + +    AP Y +    P   
Sbjct: 126 LDFHFSDEQVDLVAQRMDLALRIASP-ADSSLLARRLCAVRILLVGAPGYFERHGRPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  + + +   +    + +    +        S L+VN+  ++      G G+AL
Sbjct: 185 SELAHHRALQYSNAPGR---HWRFRHAEEGEFALEAPSPLRVNNAEALTPALRAGLGLAL 241

Query: 244 LPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            P+++V ++    R+   M         +Y   P       +++A   ++  K 
Sbjct: 242 QPEFLVWEDLRAGRLETAMAGWEVDPIALYILTPPGRGRPARVQALIAYLAEKL 295


>gi|261252111|ref|ZP_05944684.1| transcriptional regulator LysR family protein [Vibrio orientalis
           CIP 102891]
 gi|260935502|gb|EEX91491.1| transcriptional regulator LysR family protein [Vibrio orientalis
           CIP 102891]
          Length = 297

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 136/294 (46%), Gaps = 12/294 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +++  +F  VA+  SF+ AAE L +S+S +S QI+ LE E+   L  R  R + LT
Sbjct: 4   MHKRFERYALFSEVAKQLSFSKAAESLGISRSYLSSQINQLEHELATSLLIRSTRSVRLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G K+      +   +   + EL  +  + SG LRI          L     +F  L+P
Sbjct: 64  AAGEKILAKMHGINASILELEKELDHTKSEVSGLLRITAPTIFSHRFLVDICHQFQQLHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+  L +     D++  + D AIR        +++ +KL+       A+P YL     P
Sbjct: 124 DIEFDLDIGYNRQDLANSHFDLAIRATNTPPD-NMVAKKLMPYQHICCASPDYLIRKGTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           L+  +L +HN ++  +L         W  +      +      + ++    ++     G 
Sbjct: 183 LTPSDLIEHNCMSDPNL-------RQWQFSKQGNSEQISTHGDMLISDNQLLLAAAEKGK 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P Y+V+   DN +LV++++D +     +Y  YP  L+++ KL AF +F+
Sbjct: 236 GIIKMPCYLVQPALDNGSLVQLLQDYVIAESAIYLIYPPQLRSSAKLSAFTDFM 289


>gi|221209493|ref|ZP_03582474.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221170181|gb|EEE02647.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 306

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 130/297 (43%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDKLDGVTTFVQVVESGSFALAAERLGMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +P GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALAELEAAEADLDCGRNEPRGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDLIEEGIDLAVRIGPLEDSTSLAVRRLGTQYGSLGAAPSYLARYGMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H  + +       ++ +   A     +       L  +   +I      G G
Sbjct: 181 QSLDDLKNHRTVAYSR--SGVVQPWYLRAPDGSTVYIDMPHQLSFDDVQAIAAAGASGFG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP +++        +V +++        ++  +P+      K +   + +    
Sbjct: 239 IAWLPSWLLDQYVKRGEMVVVLDRCFVCEGDIHALWPKTRYLPRKTRCVIDALVEAV 295


>gi|191167601|ref|ZP_03029412.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|309795290|ref|ZP_07689708.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|190902362|gb|EDV62100.1| transcriptional regulator, LysR family [Escherichia coli B7A]
 gi|308120940|gb|EFO58202.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
          Length = 302

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  +  + F        + F+W    +  I       + ++   + ++  ++G+G
Sbjct: 181 RHPHDLLNYQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELEAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED  T        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|332305996|ref|YP_004433847.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173325|gb|AEE22579.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 294

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 137/301 (45%), Gaps = 11/301 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSF ++ +  F  VA +  F+ AA +L+++ S ISR+++ LE E+G+ L  R  R + LT
Sbjct: 1   MSFSFNGIIEFVAVAETQGFSAAARKLNVNVSHISRKVAALEKELGVSLLARSTRTVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G        E+ + L+     + +  V+ SG L+++   +  +  +   L EF  L+P
Sbjct: 61  DAGQAYFSRCQELVYGLQEANETVFDKQVELSGTLKVSAAGEFAEQHIAPLLVEFAQLHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I++  +++ ++   D  D +IR   P++ SSLI RKL    + A A+  YL     P
Sbjct: 121 KLTIEMDFNSQMVNFIDDTFDFSIRYG-PMKDSSLIARKLTNRSLVAAASERYLAENGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
                L +H  +   +          +    +R I     +  + NS  S++  C  G G
Sbjct: 180 TQPSHLTEHKCLMTNNSTW-------FFKDTNRAIEVKLDARWRSNSVRSVVLACERGLG 232

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +A LP     D   N ++V ++E         +  Y        K +    F+  K +DW
Sbjct: 233 VAYLPRSSFGDALNNGSVVPVLEPYWNREIATWIVYANRNYLPAKARLAIIFLLDKFKDW 292

Query: 298 K 298
           +
Sbjct: 293 Q 293


>gi|331017360|gb|EGH97416.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 302

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 9/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA +GSFT AAE+L L+ S++S+ +S LE+ +G++LF R  R L LTE+G 
Sbjct: 7   LKGIETFVAVASAGSFTAAAERLSLTNSAVSKSVSRLESRLGMRLFERTTRSLALTEEGV 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H V + +  +LE  +  L     +P+G+LRI      G+  +   + +F   +  ++ 
Sbjct: 67  AYHAVCTRMLAELEAAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILDFAGQHHKLRP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   ++ +DI  +  D A+R+  P+   + +  R L T  +   AAP YL+    P + 
Sbjct: 127 RVTFTDRFVDILEEGIDLAVRIGGPLIWPAGVAHRYLGTERVIFCAAPAYLQRHGTPTTF 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           ++L +H  I FG           WL   ++   E R   + L + +  + +       GI
Sbjct: 187 EDLARHACILFGRGDGSTSP---WLFVDEQGQQEARAIEARLVIGNGEAQVAAVTSAWGI 243

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L  +++KD      LV I+  + T    ++  +P   ++  K++A    +
Sbjct: 244 AQLATWLIKDQLQRGELVEILPQLATEGLALHLAWPRNRESLPKVQALVERL 295


>gi|262173670|ref|ZP_06041347.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
 gi|261891028|gb|EEY37015.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
          Length = 302

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 123/297 (41%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +  R F  V   GSFT AA  L L+Q  IS+ +S LE +VG KL +R  R + +T
Sbjct: 1   MELDLNAARCFVKVVELGSFTQAANLLGLTQPGISKAVSRLEAQVGAKLIHRSTRQVRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    + +  E    EL+ S   P G L+++    L  +L+   +K     YP
Sbjct: 61  EDGQLFMKRIQPLIYGFEEAHNELKFSKTTPVGCLKLSAPSALSHSLMMPIVKLLTERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I+L L ++ + +  +  D  +R    I    L+   L        A+P YL     P
Sbjct: 121 DLRIELSLTDQKVHVFDEGYDAVLRFGS-IDDERLVAFALQDAEWGTVASPEYLAKQGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLG 238
               EL   N +              W   +D    E R  +  +  +    ++   + G
Sbjct: 180 HHPDELRNFNCLHVK--ARGQTNTLPWRFRIDGKGIEYRQLVGNVCFDHGDPLIDAALQG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G+  +   +V D   N  L  ++ D    + + +  YP + + + KL   +  + L
Sbjct: 238 LGVVQVLSCVVADKLANGELKEVLTDFRPQAHSFHLLYPPSRQRSAKLTVLQEALIL 294


>gi|241206048|ref|YP_002977144.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859938|gb|ACS57605.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 302

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 133/294 (45%), Gaps = 10/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +RVF  V    SFT AAE   L +S+++  + GLE  +G++L  R  R ++ T 
Sbjct: 1   MDRFDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKGLEARLGVRLLQRTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +E  +     +  KP G LR+     L ++ +  +L  FL  YP+
Sbjct: 61  DGEAYYQRCLSILADIEGAEGAFAGA--KPKGLLRVDVHGTLARHFVLPSLPSFLETYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+  +   ++ +D+  +  DC +R+  P   S ++ R++  +     A+P Y+     P 
Sbjct: 119 IEFYMSEGDRLVDLVREGIDCVLRVGTPG-DSDMVARRVAMLDEVTLASPDYIATRGLPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
               L  H ++ F       +    ++  VD  +    I + + VN+  S +    +G G
Sbjct: 178 HPHRLAGHRMVGFRSSSTGTLLPLEFI--VDGTVRNVTIPATVAVNAAESYISAARMGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +P Y  + +     L+ +++D       V   YP   + + +++ F +++ 
Sbjct: 236 MIQIPRYHAEKDLAEGTLIHVLQDFPLTPTPVSLLYPRNRQLSPRVRVFIDWLV 289


>gi|218698799|ref|YP_002406428.1| putative LysR-like transcriptional regulator [Escherichia coli
           IAI39]
 gi|218368785|emb|CAR16531.1| putative LysR-like transcriptional regulator [Escherichia coli
           IAI39]
          Length = 339

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 143/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 33  MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 92

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 93  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 152

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 153 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 211

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 212 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVVGGNEEFEIEVSGKYISNDDESMIRM 271

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 272 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 331

Query: 292 LK 293
            K
Sbjct: 332 EK 333


>gi|215485407|ref|YP_002327838.1| predicted transcriptional regulator [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312964669|ref|ZP_07778920.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Escherichia coli 2362-75]
 gi|215263479|emb|CAS07805.1| predicted transcriptional regulator [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312290690|gb|EFR18568.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Escherichia coli 2362-75]
          Length = 308

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 145/302 (48%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 2   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 61

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 62  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLIEPHIGEFLT 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 122 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +  +A  +             N   S+++ 
Sbjct: 181 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEFEIEVSGKYISNDDESMIRM 240

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 241 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 300

Query: 292 LK 293
            K
Sbjct: 301 EK 302


>gi|83747356|ref|ZP_00944396.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207739636|ref|YP_002258029.1| hypothetical protein RSIPO_04337 [Ralstonia solanacearum IPO1609]
 gi|83725943|gb|EAP73081.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206593016|emb|CAQ59922.1| hypothetical protein RSIPO_04337 [Ralstonia solanacearum IPO1609]
          Length = 301

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L  F  +A   +F  AA  L +S S++S  +  LE  +G++L  R  R ++LTE G 
Sbjct: 6   LSELTAFIAIAEQRTFRAAAGVLGVSPSALSHAMRNLEARLGVRLLNRTTRSVSLTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R        LE    E+     +PSG +RI+ +    + +++  L +FL  YPDI I
Sbjct: 66  QLLRRVRPAVADLEDALNEVASERNRPSGSIRISASESAARPIVRHVLPDFLAAYPDIHI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + ++D + +DI  D  D  IRL + +    +  R    +   A A+P YL N   P +  
Sbjct: 126 ECVVDTRLVDIVADGFDAGIRLLEDVPRDMIAVRFGPDMRFAAVASPAYLSNHAPPQAPH 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I F             L    +         L + +    ++  + G GIA +
Sbjct: 186 DLAQHRCIRFRFESGALYRWD--LEHRGKSAHVNVDGPLTLGNLNLAVEAALAGIGIAWV 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P+ +V ++     LV ++         +   YP        L+ F        R+W
Sbjct: 244 PENLVAEHIAAGRLVHLLPQWSPSLSGLCLYYPANRHPPTALRLF----AQAVREW 295


>gi|262164996|ref|ZP_06032734.1| transcriptional regulator [Vibrio mimicus VM223]
 gi|262027376|gb|EEY46043.1| transcriptional regulator [Vibrio mimicus VM223]
          Length = 310

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G 
Sbjct: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRNIRLTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T      L+    ++  +  + +G+L I+   DLG+NLL   ++EF+ L+P++ +
Sbjct: 64  IFLAKTQSAIATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIEEFIALHPNVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+  +  D AIR  KP   S+L+   L         A+P YL      L  
Sbjct: 124 KLELSDSLTDMYTNPVDIAIRYGKP-ADSNLVAMLLCDSNERVLCASPDYLATHPPILHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + F  +I   + +   L+                N    + +  V G GIA 
Sbjct: 183 DDLQHHNCLCF--MIADTLHNKWILSRDGETHSVVVQGNPTCNDSDVVHRLAVKGKGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +     +  LVRI+ +  +    +Y    +    T  ++AF+ +I  K
Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEYIRGK 293


>gi|254475720|ref|ZP_05089106.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214029963|gb|EEB70798.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 308

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 130/301 (43%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRVSPAVTSARISQLEEYLGVRLFQRTTRNLTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++  + ++   +  P G L +A  + LG+ LL   + EFL  YP
Sbjct: 60  EQGRAFYDGAVAVLDAVDEAEAKVMHLTETPRGTLFVAAPLGLGRRLLAPQVPEFLDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L L ++ +D++ +  D A  L +P + S+L  RK+        AAP Y+     P
Sbjct: 120 EINLRLRLSDRAVDLTSEGLDLAFFLGQP-EDSNLRIRKIADCPRVLCAAPDYIARRGMP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                L  D H+ +      P   E    L T D P         + +    +  + + G
Sbjct: 179 QDGSALLRDGHDCLNL--RYPGASEFQWLLQTADGPRRFAVSGRYECDDGDVLTDWALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI L P++ V D+     LV +          +   Y        K + F  ++  +  
Sbjct: 237 EGIILKPEFEVADHLTSGRLVPVATQTPPVPVQLACLYTHRRHQDPKTRLFMEYMIAQLS 296

Query: 296 D 296
           +
Sbjct: 297 E 297


>gi|126443473|ref|YP_001062110.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|167578304|ref|ZP_02371178.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167723002|ref|ZP_02406238.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167897612|ref|ZP_02485014.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167914278|ref|ZP_02501369.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167922186|ref|ZP_02509277.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|254183174|ref|ZP_04889766.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254189797|ref|ZP_04896306.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254262850|ref|ZP_04953715.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|126222964|gb|ABN86469.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|157937474|gb|EDO93144.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|184213707|gb|EDU10750.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254213852|gb|EET03237.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 336

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 124/290 (42%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G
Sbjct: 3   TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 63  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 123 IELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 183 RDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y   ++    NLVR++         VY  YP       K++ +   +
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEAL 290


>gi|134296386|ref|YP_001120121.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139543|gb|ABO55286.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 326

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 132/301 (43%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    +    F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNIDAHNLNDPMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q +L   L EFL 
Sbjct: 61  ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R +P Q+++++ R L         AP  L  
Sbjct: 121 RYPEVKVHIRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L +   +    +  + +  F  +A             L     ++I +  +
Sbjct: 181 HAPPLVPADLARFETLDTPSVDGRHV--FTLIAPDGTRHLHEHDPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         ++AF +++  K
Sbjct: 239 DGLGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|167616442|ref|ZP_02385074.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142991|ref|ZP_05591253.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 336

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 124/290 (42%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G
Sbjct: 3   TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 63  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 123 IELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 183 RDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y   ++    NLVR++         VY  YP       K++ +   +
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEAL 290


>gi|213969841|ref|ZP_03397975.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301384994|ref|ZP_07233412.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302133298|ref|ZP_07259288.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213925389|gb|EEB58950.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 304

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 131/299 (43%), Gaps = 11/299 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + +F +V  + SFT A ++L +S S + + +  LE  +G++LF+R  R + LT +G
Sbjct: 3   SLGSIALFVLVTETRSFTLAGKRLGISSSGVGKSVGRLEESLGVRLFHRSTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +L+  Q+EL  +   P G+LRI+  +     L+   + +F+  YP+I+
Sbjct: 63  SIFLDRCRRILSELDAAQLELSNARDLPKGRLRISVPLVF--GLVMPVVIQFMRTYPEIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R  +P   S L+ +++ +  +    +P Y      P   
Sbjct: 121 LDIDFSDRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCIVGSPDYFARHGLPEQP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +          E +           E     +  N+   +++    G GI  
Sbjct: 180 ADLIHHACLQHKFPSTGKFEHWPLRREPGSEDFE-LPQTMVCNTTEVLVEVARAGLGITC 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF----IFLKAR 295
           LPD+++        L+ I+ D    + +    +  +   + +L+ F +F    +F  AR
Sbjct: 239 LPDFMLASAIRKGELIPILSDYTLHTGSFRLFWASSKHLSVRLRVFIDFMHANLFAPAR 297


>gi|241204239|ref|YP_002975335.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858129|gb|ACS55796.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 297

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 6/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR  SFT AA +L +SQS++S  +  LE  +GI+L  R  R ++LT+ G +
Sbjct: 7   NDLMAFLAVAREKSFTRAAAKLGVSQSALSHVVRQLEARLGIRLLTRTTRAVSLTDAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +     + ++E     + E   KP+G +RI  +      ++   L+ FL   PDI+++
Sbjct: 67  LFQGVGPHFDEIEAQLETITEFREKPAGNIRITASDHAINWIIWPKLQRFLPNNPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N   DI  +  D  +R+ + +    +  R           AP Y      P   Q+
Sbjct: 127 LMRENGLSDIVTERFDGGVRMGEQVAKDMISARIGPDFPFAVVGAPSYFDGNGVPEHPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +HN I   + +P     + W    +      R+   L  N+    ++  + G G+A +
Sbjct: 187 LVRHNCI--NERLPTYGGFWAWEFEDNGKEIRIRVEGQLAFNNSYQSVEAALDGLGLAYV 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P+ +   +     L R++E         +  YP   +++    A  + +  +
Sbjct: 245 PEDVALPHIAEGRLRRVLEAFSPHWDGYHLYYPSRRQSSPAFVALVDALRHR 296


>gi|149374857|ref|ZP_01892630.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
 gi|149360746|gb|EDM49197.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
          Length = 306

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 129/300 (43%), Gaps = 6/300 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L L +S +SR+++ LE+ +  +L  R  R  T+TE G
Sbjct: 3   DLNDLYYFVKVVDHGGFAPAGRALGLPKSKLSRRVAELESRLDTRLINRSPRVFTVTELG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R    +  + +  Q  +  S  +P G +R++    +   L+   +  F+  YP ++
Sbjct: 63  KEYYRHCLAMLVEADAAQEVIDHSRSEPVGSIRVSCPPGIIYFLVAPLIVRFMQQYPKVK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++   ++ ID+  +  D A+R+R  P++ S L  + L        AAP  +    +P++
Sbjct: 123 IEMEATSRRIDVVREGFDVALRVRYPPLEDSDLTMKVLSKNPQCLMAAPEVVAQYPKPIT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L K   I F     + +   +  A     I       L  +   ++++  V G G+ 
Sbjct: 183 PDDLSKLPSIDFEQWDGQHVWCLDGPAGASVKIHHQ--PRLVTDDVFTLLKAAVGGLGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +P  +      + NLV I+ D        +  +P        ++AF +F+     +  F
Sbjct: 241 KMPLIVGGQDLIDGNLVSILPDWRPRGGIFHAVFPSRRGLLPAVRAFLDFLADSLEEVDF 300


>gi|238561104|ref|ZP_00442413.2| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|254204050|ref|ZP_04910409.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254209026|ref|ZP_04915373.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|147744934|gb|EDK52015.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147750249|gb|EDK57319.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|238525053|gb|EEP88482.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
          Length = 358

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 123/288 (42%), Gaps = 5/288 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G
Sbjct: 25  TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAG 84

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 85  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVS 144

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 145 IELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTP 204

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 205 RDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 262

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LP Y   ++    NLVR++         VY  YP       K++ +  
Sbjct: 263 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVE 310


>gi|90411195|ref|ZP_01219208.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90328041|gb|EAS44362.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 294

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 123/293 (41%), Gaps = 7/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
             R F  +  SGS + A  +L+ S +++S  ++ LE +   +L  R  R   LT +G   
Sbjct: 6   DYRTFIEIVHSGSISAAGRRLNASPANVSAVLARLEKQYDARLLSRTTRNQQLTYEGEHF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++       + +           +  G + I+ T D G+N+L   L EF+ LYP + I L
Sbjct: 66  YQFCLLAADQEDELLN-HLSKQQQLQGSITISCTCDFGRNVLVPLLDEFMALYPQLSIHL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +K  D+  D  D AIR    ++ S+L+ R+L   H    A+P YL     P S++EL
Sbjct: 125 HLTDKISDLVKDSIDVAIRFGA-LKDSNLVARRLADNHRVLVASPEYLAQHGHPQSVEEL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +          E        ++       +    N+   +  + +   GIA+   
Sbjct: 184 ADHACLLISREGETQAEW--QFNKANQIYSVAVNAAFSSNNGEVVKHWALTSKGIAMKSI 241

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + VK    +  LV ++++       VY  +P    +  ++ A  +F+    + 
Sbjct: 242 WDVKPALADGTLVSVLDEFRQDDGAVYAVFPNRKFSPQRITALIDFLKQALQQ 294


>gi|27375363|ref|NP_766892.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27348499|dbj|BAC45517.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 325

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 133/294 (45%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G FT AA +L L+ S +S+ IS LE  +G +L  R  R LTLTE+G   
Sbjct: 11  EMEVFVRVVDLGGFTQAARKLRLTPSGVSKLISRLEVRLGSRLINRTTRKLTLTEEGQAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  ++         S   P G+L + + I  G   +   +  FL  +PD+ + L
Sbjct: 71  YQRAVRILAEM-EEAEREAASGAAPRGRLTVNSNIPFGMLHVMPLIPRFLEQHPDVTLDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  ID+  + AD AIR+  P+++S L+ RKL T  M    AP+YL     P    +L
Sbjct: 130 VLTDTLIDLMQERADVAIRVG-PLRASRLVARKLGTSRMVVVGAPNYLARFGTPKIPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I +    P+ +  +      DR          + +   +  +  + G G+A L  
Sbjct: 189 ADHRGIGW--TFPRSIRGWP-FKRGDRTEEAVPPPAARASDGEAARRLALGGVGLARLAL 245

Query: 247 YIVK---DNPNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + +    ++  LV ++++        ++  Y         +++AF +F+    R
Sbjct: 246 FHIGPDIESGRLVPVLQNYNPGDREDIHAVYVGHTAPLPARVRAFIDFLAEHVR 299


>gi|218560147|ref|YP_002393060.1| transcriptional activator TtdR [Escherichia coli S88]
 gi|218691365|ref|YP_002399577.1| transcriptional activator TtdR [Escherichia coli ED1a]
 gi|227887783|ref|ZP_04005588.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|300973240|ref|ZP_07172079.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|300977458|ref|ZP_07173921.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|301048104|ref|ZP_07195142.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|306816586|ref|ZP_07450718.1| transcriptional activator TtdR [Escherichia coli NC101]
 gi|331659350|ref|ZP_08360292.1| HTH-type transcriptional activator TtdR [Escherichia coli TA206]
 gi|331684711|ref|ZP_08385303.1| HTH-type transcriptional activator TtdR [Escherichia coli H299]
 gi|118574171|sp|Q8FDH0|TTDR_ECOL6 RecName: Full=HTH-type transcriptional activator ttdR
 gi|118574172|sp|Q1R6S1|TTDR_ECOUT RecName: Full=HTH-type transcriptional activator ttdR
 gi|218366916|emb|CAR04687.1| putative DNA-binding transcriptional regulator [Escherichia coli
           S88]
 gi|218428929|emb|CAR09878.2| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|222034792|emb|CAP77534.1| HTH-type transcriptional activator ttdR [Escherichia coli LF82]
 gi|227835179|gb|EEJ45645.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|281180114|dbj|BAI56444.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|294493058|gb|ADE91814.1| transcriptional regulator, LysR family [Escherichia coli IHE3034]
 gi|300300024|gb|EFJ56409.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300308316|gb|EFJ62836.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|300410820|gb|EFJ94358.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|305850151|gb|EFM50610.1| transcriptional activator TtdR [Escherichia coli NC101]
 gi|307625325|gb|ADN69629.1| transcriptional activator TtdR [Escherichia coli UM146]
 gi|312947631|gb|ADR28458.1| transcriptional activator TtdR [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288828|gb|EFU48226.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|315295026|gb|EFU54363.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
 gi|315297754|gb|EFU57031.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
 gi|323951406|gb|EGB47281.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323957779|gb|EGB53493.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
 gi|324005366|gb|EGB74585.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
 gi|324011993|gb|EGB81212.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
 gi|330909126|gb|EGH37640.1| putative transcriptional regulator LYSR-type [Escherichia coli
           AA86]
 gi|331053932|gb|EGI25961.1| HTH-type transcriptional activator TtdR [Escherichia coli TA206]
 gi|331078326|gb|EGI49532.1| HTH-type transcriptional activator TtdR [Escherichia coli H299]
          Length = 310

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDAIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LVR++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVRVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|238762579|ref|ZP_04623549.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638]
 gi|238699224|gb|EEP91971.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638]
          Length = 323

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/317 (23%), Positives = 139/317 (43%), Gaps = 32/317 (10%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  V    SFT  A+ L+L +SS++  +  LE  + I+L  R  R ++ T 
Sbjct: 1   MDRIDAMRVFIRVVEQRSFTQTAQDLNLPRSSVTDAVKQLEKRLNIRLLQRTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   ++   +E  ++    +  KP G LRI     L ++ +   L +F+  YPD
Sbjct: 61  DGEAYYQRCLKIIADIEDAEMAFANA--KPRGLLRIDVQGTLARHFVLPQLPDFIAQYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  D  +R+   +Q S ++ R++  +     AAP YL+    PL
Sbjct: 119 IELFISEGDRLVDLIREGFDGVLRVGN-LQDSDMVARRVALLPQVTCAAPRYLQQHGAPL 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRIS------------------- 221
           ++ EL  H +I F       +    + + T  +P  +   S                   
Sbjct: 178 TLNELAGHQMIGFRSSATGGLMPLEFCIGTQCQPSAQKEHSYQRSPPYSSAEIQDVEVQN 237

Query: 222 -----CLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
                 L V+   S +    L  GI  +P Y ++ +     L+ I+ +   P   V F Y
Sbjct: 238 VKLPAILSVSGAESFVAAARLALGIIQVPRYHIESDLRAGTLIEILPEYAPPPMPVSFLY 297

Query: 274 PEALKNTGKLKAFRNFI 290
           P   + + +++ F +++
Sbjct: 298 PRNRQLSPRVRIFSDWL 314


>gi|221200455|ref|ZP_03573497.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206135|ref|ZP_03579149.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221174147|gb|EEE06580.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221179796|gb|EEE12201.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 306

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 130/297 (43%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDKLDGVTTFVQVVESGSFALAAERLGMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +P GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALAELEAAEADLDCGRNEPRGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDLIEEGIDLAVRIGPLEDSTSLAVRRLGTQYGSLGAAPSYLARYGMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H  + +       ++ +   A     +       L  +   +I      G G
Sbjct: 181 QSLDDLKNHRTVAYSR--SGVVQPWYLRAPDGSTVYIDMPHQLSFDDVQAIAAAGASGFG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP +++        +V +++        ++  +P+      K +   + +    
Sbjct: 239 IAWLPSWLLDQYVKRGEMVVVLDRCFVCEGDIHAIWPKTRYLPRKTRCVIDALVEAV 295


>gi|26989254|ref|NP_744679.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24984100|gb|AAN68143.1|AE016446_3 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 299

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 129/292 (44%), Gaps = 9/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  VA++GS + AA  L L+ S++SR ++  E  +G +L  R  R LTLT +G   
Sbjct: 9   EMEIFAKVAQAGSLSAAARALGLTPSAVSRILARTEQRLGTRLLLRTTRALTLTPEGEAY 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    V   +   +  + +    P G+LR++  +   +  +   L  F   YP + + L
Sbjct: 69  LRGARRVLADMLEVEEAITDQ-GVPRGRLRVSAALGHARLTVVPLLAAFSARYPQVLVDL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  DI    AD A+R    +  SSL  R +        A+P YL+    PL  ++L
Sbjct: 128 TLSDEVADILGGQADVALRFGH-LPDSSLSARAIGETGQVVVASPEYLQRYGTPLEPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + F     + M D+                 ++ +S  ++ Q   LG+G+A +  
Sbjct: 187 ARHNCLRFN--FRRAMPDWP-FHRDGHTFSLKVKGNIECSSGEALAQLARLGAGVARIGT 243

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + V D+     LV ++E         ++  +        +++ F +F+  + 
Sbjct: 244 FTVADDLANGQLVPLLEAYNPGDREPIHAVFVGGPAMPARVRVFVDFLVEQL 295


>gi|254227502|ref|ZP_04920934.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262396232|ref|YP_003288085.1| LysR-family transcriptional regulator [Vibrio sp. Ex25]
 gi|151940114|gb|EDN58940.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262339826|gb|ACY53620.1| LysR-family transcriptional regulator [Vibrio sp. Ex25]
          Length = 295

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 122/284 (42%), Gaps = 11/284 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  V  SGSFT  AE+L +S+  ++R +  +E  +  +L +R  R ++LT  G +   
Sbjct: 8   KVFVDVVYSGSFTATAERLDMSRPMVTRYVEAMENWLQTRLLHRTTRKVSLTTAGERSLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  + + T         + SGK+R+A++   G + L   +  F+  +P + I + L
Sbjct: 68  QIERWLKQAD-TLTSNIAVDGELSGKIRLASSTSFGVSQLIPAVNSFMQKHPKVHIDIDL 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +   D++    D AIR+       SLI + +        A+P YL+  R     ++L  
Sbjct: 127 QDSVSDLTEQRIDLAIRIASD-PDPSLIGKPIAVCESVLVASPQYLQTHRAIAHPRDLSS 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H+ + +     K  E   W  +         I C L  N   +++   + G GI++LP Y
Sbjct: 186 HDCLGY-----KNFERHVWHLSQGEQFESVGIECRLTSNEATALLHGALQGMGISMLPTY 240

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +      +  L  ++ D       +Y  Y      +  ++AF +
Sbjct: 241 LSNIYLQSGQLESVLPDWKPNDLNIYALYSSRKHLSPAVRAFID 284


>gi|291281174|ref|YP_003497992.1| LysR substrate binding domain protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|290761047|gb|ADD55008.1| LysR substrate binding domain protein [Escherichia coli O55:H7 str.
           CB9615]
          Length = 300

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 12  NYNELYLFMQVVREGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDI+
Sbjct: 72  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 132 LELINESRFVDIIEERFDAGVRLGPEVSQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 191

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +        +    L   D+ I          +      +   LG G+A 
Sbjct: 192 ADLKAHPCIAYQFADGSVYQWE--LNQDDKKITHQPEGQWAFSDSYMEAEAARLGLGLAY 249

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  +V D+     L+R+++        ++  YP     +  L+   +
Sbjct: 250 VPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYPH-RNVSPALRMVID 296


>gi|260869812|ref|YP_003236214.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O111:H- str. 11128]
 gi|257766168|dbj|BAI37663.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O111:H- str. 11128]
 gi|323178765|gb|EFZ64341.1| HTH-type transcriptional activator ttdR [Escherichia coli 1180]
          Length = 310

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|207858172|ref|YP_002244823.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206709975|emb|CAR34330.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 310

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 9   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 69  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDL 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 129 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARHPVS-S 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 187 LESLAQAEWIIHERLPTPLRWSVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 246

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   T K++AF +F+  +
Sbjct: 247 LLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVTTKVRAFIDFLRSQ 300


>gi|197262558|ref|ZP_03162632.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197240813|gb|EDY23433.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 303

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARNPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTSNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|308186844|ref|YP_003930975.1| hypothetical protein Pvag_1336 [Pantoea vagans C9-1]
 gi|308057354|gb|ADO09526.1| Uncharacterized HTH-type transcriptional regulator yhjC [Pantoea
           vagans C9-1]
          Length = 307

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++ F  V  SGSFT AA+ L++ ++++S+ +  LE  + ++L  R  R +T+T +G + 
Sbjct: 6   AIKAFSRVVESGSFTRAADSLNMPKATLSKLVQELEAHLSVRLLQRTTRRVTVTAEGREY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     + H LE           KP G LR+       +++L   L +F   YPDI + L
Sbjct: 66  YEKALRILHDLEDIDACFNALRSKPRGHLRVDIGGSTARDILIPLLPDFFARYPDITLDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +++  D  DC IR   P+  SSL+ R +    +   A P YLK    P    EL
Sbjct: 126 GVSDRPVNLISDNVDCVIR-GGPLADSSLVARLIGHATLITCATPAYLKASGVPAYPDEL 184

Query: 187 DK-HNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
              H L+++   +        +    ++   I   RI   + N +L+     + G GI  
Sbjct: 185 RNGHWLVSYLSPLTGKPFPLRFERQEEKIEIISAHRIGVNESNGHLA---AGLAGLGIIQ 241

Query: 244 LPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              Y    +     +V I+ D     +  +  YP+    T +L+ F +++  +  +
Sbjct: 242 TFSYSLSAILRRGEMVEILRDWRPAGYPFHLVYPQNRHVTQRLRVFIDWLVARFPE 297


>gi|330992730|ref|ZP_08316674.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp.
           SXCC-1]
 gi|329760208|gb|EGG76708.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp.
           SXCC-1]
          Length = 306

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +++F    + GS + A   L LS    SR +  LE  +G++L +R  R L+LTE G    
Sbjct: 8   MQLFSRAMQMGSISAAGRALGLSPGMASRHLDALERRLGVRLCHRSTRRLSLTEAGQHYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   +  +LE  +  +    ++ SG LR    +  G   +   +  F   +P + + L 
Sbjct: 68  ELCQRLLPELEEVEARIASQRIEASGVLRFNVPLSFGVRYIAPLIPAFHAQHPAVTVDLG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D++ +  D  IR+ + ++ S L+ R+L    +   AAP YL     P S  +L 
Sbjct: 128 LNDRIVDLTGEGWDLTIRIGR-LRDSRLVTRRLAACELLVCAAPDYLTGRGRPRSWADLS 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ + F   +    +   W     R    P    L  N+  +++     G GI   PD+
Sbjct: 187 EHDCLGFS--LSGIAKPGEWFYGRSRERRVPVRGPLCANNGDALVACASAGLGIIYEPDF 244

Query: 248 IVKDNPNLVRI----MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           IV D     R+    ++        ++  Y        K++A  +F+ 
Sbjct: 245 IVADAVRAGRLEVLTLDAPPAALGDIHLLYAPDRTPPAKVRAMIDFLV 292


>gi|306842383|ref|ZP_07475039.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306287490|gb|EFM58958.1| LysR family transcriptional regulator [Brucella sp. BO2]
          Length = 331

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT TE G 
Sbjct: 31  LDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGR 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI++
Sbjct: 91  VFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEV 150

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P S +
Sbjct: 151 RLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPE 209

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            L  D+H+ +      P   E +  L T +             +    + Q+ + G GI 
Sbjct: 210 ALLSDRHHCLLL--RFPGSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGGRGII 267

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             P + VK+   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 268 NKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 323


>gi|190892400|ref|YP_001978942.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697679|gb|ACE91764.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 301

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 134/296 (45%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + +F  V  +GSF    + + LS+S+  + +  LE  +G +L  R  R L+LT++G
Sbjct: 5   NLNDILIFMAVVDAGSFIAGGQAMGLSRSAAGKAVIRLEDRLGTRLLNRTTRRLSLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     V   ++  +  +   S  P G LR+      G+ ++   ++++LL +PDIQ
Sbjct: 65  RLFYEHGLGVLASVDEAEASVAGQSGAPRGVLRLTVPDAFGRLVVLPIVEKYLLAWPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS--SLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++   ++  DI  +  D AIR+     +S   L+ R +        A+P YL +  EP 
Sbjct: 125 VEVNFTDRKADIVEEGFDLAIRIGAMPSASENRLLSRVIAADRARLCASPSYLADRGEPC 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L  H+ + F        + + +       +     S L+++S  +I    V G GI
Sbjct: 185 HIDDLAAHDCLVFSS--RDQRQGWRFRGDDGAWVKAQGRSRLRLDSSEAIRDAAVAGLGI 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP ++   +     L  ++ ++      +   YP+      +++ F + +  + 
Sbjct: 243 ALLPGFLAAGDLAAGRLRHVLPELEIDDAKIVALYPDKRLLEPRVRRFIDLMVEEL 298


>gi|227818871|ref|YP_002822842.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36959130|gb|AAQ87555.1| Transcriptional regulators, LysR family [Sinorhizobium fredii
           NGR234]
 gi|227337870|gb|ACP22089.1| putative LysR, transcriptional regulator [Sinorhizobium fredii
           NGR234]
          Length = 305

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  ++VF  V  SG F  AA+ LH+S  S++R I+ LE ++G +L  R  R L LT 
Sbjct: 1   MDRWQAMQVFVQVVESGGFAPAAKMLHMSPPSVTRAIAKLEEQIGTRLLVRTTRSLKLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  ++   +     S + P+G L +      G+  +   + EFL  YP 
Sbjct: 61  AGEGYVADCRRILAEIAEAEANAAGSFIHPAGLLTVTAPALFGRIHVLPVILEFLDRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++ +  ++  ++  +  D A+R+   + +S LI R++ ++     A+P Y     EP 
Sbjct: 121 MQVKTVFVDRVTNLVEEGLDVAVRIAA-LPASGLIARRVGSVRQVLCASPGYFARFGEPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H +I    L         WL   D  I  P    L  N+    +   V G G+
Sbjct: 180 IPQDLIHHRIIGRDGLFGHS----EWLFGRDNSIRVPISPRLICNTNDVAIAAAVAGWGL 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +    Y V    +   L  ++ D       ++  + E    + +++AF +F   + R
Sbjct: 236 SRFQSYQVAPEIEAGRLKVVLADYEREPVPIHIVHAEGRMVSARVRAFVDFAAERFR 292


>gi|28870365|ref|NP_792984.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853612|gb|AAO56679.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 304

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 131/299 (43%), Gaps = 11/299 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + +F +V  + SFT A ++L +S S + + +  LE  +G++LF+R  R + LT +G
Sbjct: 3   SLGSIALFVLVTETRSFTLAGKRLGISSSGVGKSVGRLEESLGVRLFHRSTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +L+  Q+EL  +   P G+LRI+  +     L+   + +F+  YP+I+
Sbjct: 63  SIFLDRCRRILSELDAAQLELSNARDLPKGRLRISVPLVF--GLVMPVVIQFMRTYPEIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R  +P   S L+ +++ +  +    +P Y      P   
Sbjct: 121 LDIDFSDRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCIVGSPDYFARHGLPEQP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +          E +           E     +  N+   +++    G GI  
Sbjct: 180 ADLIHHACLQHKFPSTGKFEHWPLRREPGSEDFE-LPQTMVCNTTEVLVEVARAGLGITC 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF----IFLKAR 295
           LPD+++        L+ I+ D    + +    +  +   + +L+ F +F    +F  AR
Sbjct: 239 LPDFMLASAIRKGELIPILSDYTLHTGSFRLFWASSKHLSVRLRVFIDFMHANLFAPAR 297


>gi|107028576|ref|YP_625671.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686578|ref|YP_839825.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897740|gb|ABF80698.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652293|gb|ABK12932.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 316

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   ++  + E  ++  KPSG+L +  T   GQ+ +   +  +   YP 
Sbjct: 61  AGQRYLDRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQSYVMPAVVRYRERYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S L+ ++L  +     A+P YLK    P
Sbjct: 121 VAVELTLSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGDVGSVLCASPAYLKARGTP 180

Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L  H  +     L P+     +      R   E  +   QVN   ++      G 
Sbjct: 181 RTVSDLAGHACLRLVTPLFPRDRWHLD--GPNGRETVELPLPDFQVNIADALGTALRAGL 238

Query: 240 GIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP         +  LVR++ D      TVY  Y        K++ F +F+  
Sbjct: 239 GIGSLPMSAALPALASGALVRVLPDYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 294


>gi|331651202|ref|ZP_08352227.1| transcriptional regulator, LysR family [Escherichia coli M718]
 gi|331050943|gb|EGI22995.1| transcriptional regulator, LysR family [Escherichia coli M718]
          Length = 329

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 143/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 23  MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 82

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 83  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 142

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 143 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 201

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 202 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVVGGNEEFEIEVSGKYISNDDESMIRM 261

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 262 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 321

Query: 292 LK 293
            K
Sbjct: 322 EK 323


>gi|296114672|ref|ZP_06833324.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978768|gb|EFG85494.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 304

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 136/291 (46%), Gaps = 5/291 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D + VF  V ++GSF+ A   L LS+S++ + I+ LE  +G++LF+R  R ++LT
Sbjct: 1   MRDRFDGVDVFIEVIKAGSFSVAGSHLALSRSAVGKTIARLEERLGVRLFHRTTRTISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   +       H+L+     L+    + +GKLRI   +  G++ +   L      YP
Sbjct: 61  EEGLIYYERCLRAVHELKEGAELLESGRHEVAGKLRITMPLLFGRHCVAPILVNLATQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L   +  +D+  D  D AIR   P     L  R + T      A+P YLKN   P
Sbjct: 121 QLKLDLHFSDHTVDLIGDRYDLAIRNHSPGIDMGLDVRVVATQGKVVCASPTYLKNSAIP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I +L +H  + +  L       + +  +            LQ +SY +I    + G+G
Sbjct: 181 RDIDDLGQHQTLAY--LHKGETFPWTFFLSDGERKKADLNPRLQFDSYDAIADATLAGAG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +A LPD++     ++  L+R++ +   P F  Y  +P       KL+   +
Sbjct: 239 VACLPDWLAHNHIESGRLLRLLPNFSMPRFDTYAVWPTTRFMPLKLRCVVD 289


>gi|255319115|ref|ZP_05360336.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262378144|ref|ZP_06071301.1| transcriptional regulator LysR family [Acinetobacter radioresistens
           SH164]
 gi|255303917|gb|EET83113.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262299429|gb|EEY87341.1| transcriptional regulator LysR family [Acinetobacter radioresistens
           SH164]
          Length = 312

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V  SGSFT AAEQ+ L+ + +SR IS LE  +G KL  R  R   LT+ G+
Sbjct: 10  LHAMHAFLKVIDSGSFTAAAEQMELTTAQVSRLISELEGRLGTKLLQRSTRQHALTDIGA 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V   +E  + +    + +P G+LR+ +    G + +   + EF   +P + +
Sbjct: 70  SYAEQCRQVLAMVEEAETQAMGMATEPQGRLRVLSMGSFGHHYISPVMAEFCQNHPKLTV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +        D+     D ++ L + +  S  + R++ TI     A+P YLK   EP S+ 
Sbjct: 130 EYRTSQNVPDLLGKGIDVSLYLTESLTDSRFVARQIGTIFSLLCASPAYLKKYGEPESLD 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH  +    + P     ++ ++             L  ++   ++       GIALL
Sbjct: 190 DLQKHACLRL--VNPSITPQWHLISKNSCSYQVDITGPLIADTPELLLDMVQQDMGIALL 247

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P + V +      L R++ D  +P   VY   P       K +A+  ++
Sbjct: 248 PTFTVIEAVRTGRLCRVLADWRSPDIGVYTLLPSRHFIDAKTRAWLRWV 296


>gi|209919164|ref|YP_002293248.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|300816316|ref|ZP_07096538.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|209912423|dbj|BAG77497.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|300531006|gb|EFK52068.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|324018056|gb|EGB87275.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
          Length = 307

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLVIKERDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|218530384|ref|YP_002421200.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218522687|gb|ACK83272.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 313

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 132/290 (45%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF VVA + SF  AA++L LS++++S+ ++ LE  +G +LF+R +R L LTE G
Sbjct: 6   DFEAWAVFAVVADALSFARAADELGLSKATVSKAVARLEGRLGARLFHRTSRRLALTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  +    +++  P G++R+A  +  G   +   L EFL  +  + 
Sbjct: 66  RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHVAPVLPEFLAAHAQVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     A P YL     P   
Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLARYGPPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L   + + +  L     + + +       +       L+ N+  +++     G G+A+
Sbjct: 185 EDLKARSCLGYAYL--PTPDRWPFANAAGETVTIVPEGPLRANNADALVPALRAGLGLAV 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            PD+ + ++     L R+M D   P   +    P  L    ++ A   F+
Sbjct: 243 QPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292


>gi|37677258|ref|NP_937654.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|320159313|ref|YP_004191691.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
 gi|37201803|dbj|BAC97624.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319934625|gb|ADV89488.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
          Length = 308

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 130/305 (42%), Gaps = 15/305 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMTLFVSIVKNKGLAAAGRELGLSPATVTARLQALEDRYGVKLLNRSTRHISLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+   ++   +  T+  LQ  S +  G L+I+   D+G+  +   +  F   YP 
Sbjct: 61  SGAMYHQACLDIIDSVIETENLLQTGSKEVRGTLKISAPRDIGKQHISPIISAFSQQYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  S+LI RKL +      A+P YL     PL
Sbjct: 121 VVPYLYLNDNLSNLAESGLDIVIRYGE-LADSNLISRKLASSRRVLCASPAYLARKGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L  H+ +       +           D+      +     +    I Q+ + G+GI
Sbjct: 180 TPQDLAHHDCLAMVRSNEEMKTWH--FQDHDQHNVITVVPKRFSDDGEVIRQWALDGAGI 237

Query: 242 ALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL     V+D+     LV ++   +        +    +   Y        +++ F +F+
Sbjct: 238 ALKSVLDVQDDIEQQRLVTLLNGYMKNFNASTSSAGADLNVIYLSRQYQPKRIRLFIDFL 297

Query: 291 FLKAR 295
             + +
Sbjct: 298 LAQFQ 302


>gi|254250329|ref|ZP_04943648.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124879463|gb|EAY66819.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 316

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   ++  + E  ++  KPSG+L +  T   GQ+ +   +  +   YP 
Sbjct: 61  AGQRYLDRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQSYVMPAVVRYRERYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S L+ ++L  +     A+P YLK    P
Sbjct: 121 VAVELTLSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGDVGSVLCASPAYLKARGTP 180

Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L  H  +     L P+     +      R   E  +   QVN   ++      G 
Sbjct: 181 RTVSDLAGHACLRLVTPLFPRDRWHLD--GPNGRETVELPLPDFQVNIADALGTALRAGL 238

Query: 240 GIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP         +  LVR++ D      TVY  Y        K++ F +F+  
Sbjct: 239 GIGSLPMSAALPALASGALVRVLPDYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 294


>gi|326424338|ref|NP_762991.2| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|319999724|gb|AAO07981.2| Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 308

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 130/305 (42%), Gaps = 15/305 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMTLFVSIVKNKGLAAAGRELGLSPATVTARLQALEDRYGVKLLNRSTRHISLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+   ++   +  T+  LQ  S +  G L+I+   D+G+  +   +  F   YP 
Sbjct: 61  SGAMYHQACLDIIDSVIETENLLQTGSKEVRGTLKISAPRDIGKQHISPIISAFSQKYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  S+LI RKL +      A+P YL     PL
Sbjct: 121 VVPYLYLNDNLSNLAESGLDIVIRYGE-LADSNLISRKLASSRRVLCASPAYLARKGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L  H+ +       +           D+      +     +    I Q+ + G+GI
Sbjct: 180 TPQDLAHHDCLAMVRSNEEMKTWH--FQDHDQHNVITVVPKRFSDDGEVIRQWALDGAGI 237

Query: 242 ALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL     V+D+     LV ++   +        +    +   Y        +++ F +F+
Sbjct: 238 ALKSVLDVQDDIEQQRLVTLLNGYMKNFNASTSSAGADLNVIYLSRQYQPKRIRLFIDFL 297

Query: 291 FLKAR 295
             + +
Sbjct: 298 LAQFQ 302


>gi|209518243|ref|ZP_03267070.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501358|gb|EEA01387.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 310

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 144/291 (49%), Gaps = 11/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  +GSF  AAE++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRHVVEAGSFVGAAEKMEMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+   +L+     +  +SV P G+LR+++    G + +   + ++   YP + + + 
Sbjct: 67  ERLSQALTELDEAGQAVGAASVVPHGRLRVSSLSAFGLSHVMAAVADYAAQYPQVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R++ T H+   A+P YL+    P S+ +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPGGLKSSSLIARQIATAHLVLCASPAYLRKHGTPKSVADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +  +          +AT D      +   L VN   ++    + G+GIA L  
Sbjct: 187 ARHNYLQYAGVSALE------VATGDAASRVRQSGNLIVNQLEALRVVVLHGAGIATLGT 240

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++  +     +V ++ D + P    ++  Y      + K+++F +F+  +
Sbjct: 241 EVIGSDLAEGRIVPLLVDEVPPRELPIHVIYTSRRHLSAKVRSFVDFLVAR 291


>gi|153832234|ref|ZP_01984901.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148871545|gb|EDL70400.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 307

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMTLFVSIVKNQGLAAAGRELGLSPATVTARLQSLEDRYGVKLLNRSTRHISLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+   E+   ++ T+  LQ  + +  G L+I+   D+G+  +   L EF  LYPD
Sbjct: 61  SGAMYHQACLEIIDSVKETENLLQTGTKEVRGTLKISAPRDIGKQYISPILSEFSQLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  S+LI RKL +      A+P YL     P+
Sbjct: 121 VIPYLYLNDNLSNLTESGLDIVIRYGE-LADSNLISRKLASSRRVLCASPQYLAKKGTPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W    +       +   +  +    I Q+ + G+G
Sbjct: 180 TPQDLAQHDCLA---MVRSNEELKTWHFQDEEQHNVITVVPKRFSDDGEVIRQWALDGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+++     LV ++   +        +    +   Y        +L+ F NF
Sbjct: 237 IALKSILDVQEDIKQQRLVTVLNGYMKNFNASTSSAGADLNVIYLSRQYQPKRLRLFLNF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LIER 300


>gi|238782740|ref|ZP_04626770.1| LysR-family regulatory protein [Yersinia bercovieri ATCC 43970]
 gi|238716400|gb|EEQ08382.1| LysR-family regulatory protein [Yersinia bercovieri ATCC 43970]
          Length = 305

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 122/294 (41%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T 
Sbjct: 1   MDQIQAMRIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  ++   ++    E          ++P GK+RI     L +N++   L +F   YP 
Sbjct: 61  EGTLYYQRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALSDFYQRYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L  ++  ID+  +  DC +R   P     L  R +        A+P YL     P 
Sbjct: 121 ITLILGANDSTIDLMREGVDCVLRAWLP-HDEQLAVRNIGQQPQITCASPAYLAKYGVPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H  + +   +        +     R       S L VN   + +   V G G+
Sbjct: 180 SLDDLAGHQAVGYFSQLTHRDYPLEFTYQ-GRVETRELPSILSVNGADAYIAAGVAGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P   ++       L+ ++     P+  ++  +P       +++   +++  
Sbjct: 239 IQAPTQGIQSQLAQGELIEVLPHSPPPAMPLFIMFPPGRFLAPRVRVLIDWLIA 292


>gi|320197247|gb|EFW71863.1| Putative LysR-like transcriptional regulator [Escherichia coli
           WV_060327]
          Length = 329

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 142/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 23  MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 82

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G  L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 83  SLTEEGQHLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLIEPHIGEFLT 142

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 143 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 201

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 202 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVVGGNEEFEIEVSGKYISNDDESMIRM 261

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 262 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 321

Query: 292 LK 293
            K
Sbjct: 322 EK 323


>gi|87121544|ref|ZP_01077432.1| transcriptional regulatory protein [Marinomonas sp. MED121]
 gi|86163076|gb|EAQ64353.1| transcriptional regulatory protein [Marinomonas sp. MED121]
          Length = 295

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 130/286 (45%), Gaps = 4/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  + ++GSF  AAE+L +   ++S+ I  LE E+  +L  R  R ++LTE G K +
Sbjct: 1   MRIFVTLVKAGSFAKAAERLQIKSPTVSKAIQLLEKELHTQLVVRSTRTMSLTETGQKYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + ++L+  + + +++   P GKL + + + LGQ+LL   + +F+  YP++++++ 
Sbjct: 61  EKADFILNELDELENDTKQAQGTPKGKLMVTSPVSLGQHLLAPLMPKFMKRYPELEVEID 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N   D+  D  D AIR +KP     L    +  +     A+P YL     P    EL 
Sbjct: 121 LSNHWRDLKRDGYDVAIRSKKPGADLGLYCLPIKPLLPILVASPDYLAEHGTPAHPNELK 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I       +    + +  +          S    N     ++  + G GI      
Sbjct: 181 AHIAI-LHKGGDRLFNQWKFFHSKKGEFAFEASSRYISNHIPVSIEAALQGLGILNTYSI 239

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V++      L++++ +   P    +  Y +    + KL AF +F+
Sbjct: 240 YVEEALKEGRLIQLLPNYRQPDIDRFAFYHQKRALSPKLDAFLSFL 285


>gi|167851614|ref|ZP_02477122.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
          Length = 285

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 118/284 (41%), Gaps = 8/284 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSFT AA +  ++ +++SR +S LE  +G++LF R  R + LTE G        E   +L
Sbjct: 2   GSFTAAATEAGITPAAVSRSVSRLEARMGVRLFVRTTRRIRLTEVGRAYLDQCREALSRL 61

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
              + E       P+G LR++         +   L EF   YP +++   + N++ID   
Sbjct: 62  INAEREATGQQNAPAGLLRVSMPTPYAHYRVLPLLAEFCARYPQLRVDTHISNRNIDFVD 121

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           +  D AIR R P+  S+L+ RKL    +   A P YL+    P S+ EL  H  I F   
Sbjct: 122 ESFDLAIRGRAPM-GSNLVARKLEDAELVIVATPDYLRRRGIPRSLDELPHHECIQFER- 179

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI--MQYCVLGSGIALLPDYIVK---DN 252
            P       W    D    E             +        G+G+     ++V+    +
Sbjct: 180 -PSTGRRNAWTFMQDGKCIELVTDGRYTTGGDVLGGATLARSGAGLFQTYRFVVESDLRD 238

Query: 253 PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LV ++      S      YP     + +++ F +F+  K  +
Sbjct: 239 GTLVEVLPQFGGASRPFVLLYPHRRHLSLRVRCFVDFLVEKLEE 282


>gi|119470640|ref|ZP_01613308.1| putative LysR-family transcriptional regulatory protein
           [Alteromonadales bacterium TW-7]
 gi|119446110|gb|EAW27388.1| putative LysR-family transcriptional regulatory protein
           [Alteromonadales bacterium TW-7]
          Length = 295

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 125/284 (44%), Gaps = 11/284 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA SGSFT +AE+L +S+  ++R I   E  +  +L +R  R +TLT  G     
Sbjct: 8   QVFVDVAYSGSFTASAERLEMSRPMVTRHIESAEAWLNTRLLHRTTRKVTLTTAGEACLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              +   +     +E  +S  + SGK+R+AT++ LG   L      F+  +P++QI + L
Sbjct: 68  EIEQWLAQANRL-VEQTKSQQQLSGKIRVATSMSLGFAQLAPIFTRFMKRHPNVQIDIDL 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++   D+     D AIR+       SLI + +        A+  YL +     + Q+L  
Sbjct: 127 EDSTTDLIEQRVDLAIRIAAN-PDPSLIGKPIAECESILVASASYLADYPPITTPQQLSA 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  + +     K  + + W            + C L  N   +++   + G GI++ P Y
Sbjct: 186 HQCLGY-----KNFDRYIWHLHNGNEFQSVDVKCNLSANEATTLLHAAIAGGGISVQPTY 240

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +      +  L R++    +    +Y  YP     +  ++A  +
Sbjct: 241 LANQYILDGRLQRVLAPWTSNPMKIYVLYPSRQHLSATVRALID 284


>gi|71278365|ref|YP_267683.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144105|gb|AAZ24578.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 298

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 134/298 (44%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+  +++L+   VF  V   G+ + AA+ + LS++ +S  I  LE ++GIKL  R  R +
Sbjct: 1   MNISFEQLKSMVVFAQVIEQGTLSGAAKHIGLSRAVVSYHIKKLEAQLGIKLLNRSTRTI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           + TE G + ++    +  +      +++    +P G L+I   +++G   +   L EF  
Sbjct: 61  SATEAGLEYYQYCRVIAEQASAANRQIENLKHEPVGLLKITCPVNVGLQTIVPALNEFRT 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +YP I++ ++L ++ ++I  +  D AIR   P+  S L   KL T+      +P Y +  
Sbjct: 121 IYPKIELDVMLTDEVVNIIKEGIDLAIR-GAPLADSGLQAAKLSTLSTCLCGSPAYFEKF 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P    EL+KH  + +  L    +E    L    R         +  N+  +   +   
Sbjct: 180 GFPKHPTELNKHQWVLY-KLTAGSLE----LTKGSRSFSIEMKGTISTNNAAARTAFVEG 234

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G G+  +P Y  K       L+ +++D       VY  +P     + KL+   +F+  
Sbjct: 235 GHGLGRIPVYDAKPRIKAGQLLSVLDDYDMRDIHVYGVFPPGNAESKKLRLLIDFLKA 292


>gi|229519898|ref|ZP_04409330.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229343092|gb|EEO08078.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 313

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G 
Sbjct: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ +
Sbjct: 64  IFLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTM 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L ++  D+  +  D AIR  +P   S+L+   L         A+P YL      L  
Sbjct: 124 KLDLSDRLTDMYANPVDIAIRYGQP-ADSNLVAMLLCDSNERVLCASPEYLATHPPILHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + F  ++   + +   L+                N    + +  V G GIA 
Sbjct: 183 DDLQHHNCLCF--MLADTLHNKWILSRNGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +     +  LVRI+ +  +    +Y    +    T  ++AF+ FI  K
Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREK 293


>gi|71734420|ref|YP_275148.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554973|gb|AAZ34184.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 298

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 8   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +K +L  YP   + L++
Sbjct: 68  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVKAYLQRYPGTSVDLLI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P S QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQL-DPNVIARPLGHCDSVVCASPAYLAMHGTPASPQELAA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E          P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 187 HNCLTYSYFGKSLWE----FTRQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+ ++ D    +  ++  Y      +  L+   +F+  
Sbjct: 243 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFLTE 289


>gi|127514033|ref|YP_001095230.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126639328|gb|ABO24971.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 293

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 127/299 (42%), Gaps = 12/299 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +  F  VA S  F+ AA QL LS S +SRQ++ LE  +G  LF R  R ++LT+
Sbjct: 1   MDSFEGIVEFIAVAESNGFSAAARQLGLSTSHVSRQVARLEVRLGCALFARTTRSVSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   L     E+ +  ++ SG LR++      +  +   L +F   +P 
Sbjct: 61  AGQGYYRQCQNLLVGLRQANEEVTQQQLQLSGTLRVSAAGAFAEQYIAPVLIDFARQHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  +++ ++   +  D AIR    ++ S L+ RKL    M A A+P YL     P 
Sbjct: 121 LTIEMDFNSRMVNFVEEGIDFAIRFGA-LKDSGLVARKLANRDMMAVASPQYLAEFGIPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L  H+ I   +       D       D  +        + N+  +++       GI
Sbjct: 180 TPQDLRLHSCIISNN-------DHWLFQQGDGELSIKVEGRWRSNNVPAVIAAAEQHLGI 232

Query: 242 ALLP--DYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LP   +I      +LV ++        T +  Y        + +   + +     DW
Sbjct: 233 AYLPKSSFIAPLAKGSLVPVLSSYWNRGITSWIVYQNRRFLPMRARMAIDHLLAHFADW 291


>gi|226945308|ref|YP_002800381.1| transcriptional regulator LysR family protein [Azotobacter
           vinelandii DJ]
 gi|226720235|gb|ACO79406.1| Transcriptional regulator LysR family protein [Azotobacter
           vinelandii DJ]
          Length = 297

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 128/294 (43%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ +  F  V R GSFT AA  L ++ S++S  +  LE  +G++L     R L+ TE+G
Sbjct: 5   SFNDILAFVHVVREGSFTRAAALLGVTPSALSHAVRALEARLGVRLLTHTTRRLSTTEEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       +  ++     ++E   KP+G +RI +      ++L   L + L  YPDI 
Sbjct: 65  ERLFVNVLPHFEGIDAELAAVEELRDKPAGTIRITSAEHAANSVLWPKLSKVLHEYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    DI     D  +RL   +    +  R    + +    +P Y      P + 
Sbjct: 125 VEVSVDYALSDIVSQRYDAGVRLGNQVAKDMIAVRIGPDLRIAVVGSPGYFAQRPVPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  HN I     +P       W    D    + R+      N+  SI++  + G G+A
Sbjct: 185 HDLAGHNCINL--RLPTHGGLLPWDFAKDGQEVKFRVGGQWTFNNSSSIVKAALAGYGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+ +V ++     L+R+++D   P    +  YP   +++  L      +  +
Sbjct: 243 FVPEDMVLEHIDAGRLIRVLDDWCDPYPGYHLYYPNRRQSSRALGVIVEALRHR 296


>gi|170695190|ref|ZP_02886337.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170139810|gb|EDT07991.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 294

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 133/289 (46%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS T AAE+  +S + + + I  LET +G +L  R  R  +LTE G + +
Sbjct: 7   MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLETRLGTRLLTRTTRRQSLTEIGRQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L++   +  G  +    + ++L  +PD+ ++L 
Sbjct: 67  EQCRRILADVKDAESLAEAMAAAPRGVLKVTVPLTYGVEVFSSAMTDYLSAWPDVTLELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+  D+  +  D A+R+   +  SS + R L    M A A+P YL     P +  +L 
Sbjct: 127 LSNRMRDLVEEGFDAAVRIGH-LPDSSFVARPLKPYRMRACASPAYLARAGIPRTPADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F     +        +  + P+   R    + N+  ++    + G G+ L P+ 
Sbjct: 186 HHECLGFLHWGREGTWRLGGESATENPL---RAGRFRANNGQALKVAALRGFGLVLQPEA 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++    ++  LV ++E+ +     V+  YP   + T KL +F +F+  +
Sbjct: 243 LLAREIESGELVSVLEEHLPQGAPVHLVYPRDRRATPKLTSFIDFVIER 291


>gi|268592845|ref|ZP_06127066.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291311632|gb|EFE52085.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 324

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 130/294 (44%), Gaps = 10/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F  +    SF+ AA++L+++ SS+SR +  LE ++G+ L  R  R   LT+ G 
Sbjct: 20  FRHLELFIKIVECNSFSLAAKKLNVTPSSVSRGLQQLEDQLGVVLLKRTTRNFILTDAGR 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L + +  +   L+ + +          G+L+I  +I  G   L     E+    P + +
Sbjct: 80  YLLQRSQNLLADLDDSLVNTASFYQHAQGQLKITCSIAFGVCHLMQIYSEYRETNPKVSL 139

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L+++ I+++    D A+R+       +   RK+  I+     +  Y +    P S  
Sbjct: 140 SVDLNDELINLNEVDFDIALRITSH-PPENFALRKICNINWVYCGSRTYFERYGIPQSPA 198

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++  HN +    + P   + +               + ++VNS L +++      GI  L
Sbjct: 199 DIASHNCL----INPNIPDTWRMTDKDGSAYPLEINNMIEVNSSLGLLEAARCHQGIVCL 254

Query: 245 PDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P Y++    +N  L+ ++ D       F +Y  Y  A  ++ K++ F +F+  K
Sbjct: 255 PTYMLGNYIENGELLPVLLDYDPKSTPFALYALYHPAHTHSPKIRTFIDFLVEK 308


>gi|209520238|ref|ZP_03269007.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499313|gb|EDZ99399.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 296

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 123/292 (42%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++++RVF  +A   SFT AA+ L + +++++  +  LE  +G +L  R  R + LT 
Sbjct: 1   MDRFEEMRVFVRIAERQSFTRAADDLQIPRATVTNLMKRLEERLGARLLERTTRTVRLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   +E  +         P G LR+     L ++ +   L  FL  +P 
Sbjct: 61  DGEAHYERCVRLIADMEEAEGAFSNL--APKGLLRVNVQGTLARHFVVPALPAFLERFPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS+I R++  +     A+P YL    EP 
Sbjct: 119 IELMIGEDDRFVDLVREGIDCVLRAG-VLQDSSMIGRRVAQLQQVTVASPAYLAAYGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L  H  + +            +     R I     S + V+         + G GI
Sbjct: 178 DPAALSAHRAVNYVSSATGKPVPLEFRVD-GREIALVLPSAVSVSGAELYTGAAIAGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V        L  I+ D   P   +   YP+  + + +++ F  ++
Sbjct: 237 VQVPRYHVDGELAAGRLRVILADYPPPPMPLSVLYPQNRQLSSRVRVFAQWL 288


>gi|254467513|ref|ZP_05080923.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206684514|gb|EDZ44997.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 295

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 124/295 (42%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R F  VA   SFT  A Q+ +S    S+ ++ LE ++G +L  R  R +TLT+
Sbjct: 1   MDKLDCMRTFAAVAAQSSFTGGARQMGISTKLASKYVARLEEQLGAQLLNRTTRKVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  +  +Q    + +G +RI     LG   L   L  F   +P 
Sbjct: 61  TGRAYLERCLPLLDQFDELEDVVQLRQQELAGPVRITAPTGLGSRELVEALHPFQQAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+L ++ + I  +  D A+R    ++ S+L+ RKL ++     A+P YL    EP 
Sbjct: 121 VTVELVLSDRHLPILEEGVDLAVRFGA-LKDSTLVARKLCSMRRVVVASPEYLAAHGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             + L   N +    L+    +   W            +    + NS  ++      G G
Sbjct: 180 GPEALAARNCL----LLTSAPQPEAWAFGRGSGARTITVGGSFRANSPRAVAHMAAHGLG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA  P Y       +  L  + E   T   T+Y  YP +   T +++A  + +  
Sbjct: 236 IARCPHYTALPFLRDGRLQVLFEKQETDPVTLYAVYPPSRHLTARIRALIDHLAA 290


>gi|59711702|ref|YP_204478.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59479803|gb|AAW85590.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 311

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +FY +A++GSFT AA+Q+ +S S +S+Q+  LE  + +KL +R  R L LT+ G + 
Sbjct: 7   QMVIFYALAKAGSFTAAAKQMGVSTSHVSKQLGALEETLNLKLVHRTTRSLILTDAGQQF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +Y+ +      + +   + +G LR+  +   G   +   + +    YPD+Q+++
Sbjct: 67  FLYCETIYNAMTEASAIMDDERDEVAGILRLGLSQSFGTMHIIPAIDKLRNQYPDLQVEV 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+  D  D  +   + +     + ++L   +    A+P YL + + P    +L
Sbjct: 127 RLFDHQADMLKDGLDLWVTNFEDLP-EGYVAQRLADSNFVLAASPDYLIDKKVPHHPLDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN +T+     +  +  NW  +        ++S   +V+   ++    + G GIA L 
Sbjct: 186 VEHNCLTYQS---RYRDYSNWDFSKGNESLCVKVSGNYRVDLAEAVRDATISGWGIAYLA 242

Query: 246 DYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            Y++    ++  L++++     +    +Y  YP       K+ A  +F+  
Sbjct: 243 SYLLTNEFNDGKLIQLLPGWKASQKMPIYAVYPSRKHLPRKISAVIDFLRE 293


>gi|187733277|ref|YP_001881634.1| putative DNA-binding transcriptional regulator [Shigella boydii CDC
           3083-94]
 gi|187430269|gb|ACD09543.1| transcriptional activator AaeR [Shigella boydii CDC 3083-94]
          Length = 309

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++++++   G+GIA +
Sbjct: 183 DLSSHSWLEYSV---RPDNEFELIAPEGISTRLIPQGIFVTNDPMTLVRWLTAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P  +++ +     L  ++    +    VY  Y E  K   K++   N
Sbjct: 240 PLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 286


>gi|15601744|ref|NP_233375.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121587011|ref|ZP_01676789.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121726364|ref|ZP_01679638.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|153818161|ref|ZP_01970828.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153821018|ref|ZP_01973685.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227812556|ref|YP_002812566.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229505874|ref|ZP_04395383.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229510272|ref|ZP_04399752.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229517597|ref|ZP_04407042.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229605407|ref|YP_002876111.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254850154|ref|ZP_05239504.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746273|ref|ZP_05420220.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262158156|ref|ZP_06029274.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|298499763|ref|ZP_07009569.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9658433|gb|AAF96887.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121548746|gb|EAX58793.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121631112|gb|EAX63487.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|126511267|gb|EAZ73861.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126521392|gb|EAZ78615.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227011698|gb|ACP07909.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229345633|gb|EEO10606.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229352717|gb|EEO17657.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229356225|gb|EEO21143.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229371893|gb|ACQ62315.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254845859|gb|EET24273.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736027|gb|EET91425.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262030034|gb|EEY48680.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|297541744|gb|EFH77795.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 308

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 131/304 (43%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE
Sbjct: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP+
Sbjct: 61  SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  SSLI RKL T      A+P YL     P 
Sbjct: 121 VVPYLYLNDNISNLAESGLDVVIRYGE-LADSSLISRKLATSRRVLCASPAYLARKGIPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W    +       +      +    I Q+ + G G
Sbjct: 180 TPQDLAQHDCLA---MVRSNEEMKTWHFQENEQHKVITVVPKSFADDGEVIRQWALAGMG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+D+     LV +++  +             +   Y        +L+ F +F
Sbjct: 237 IALKSILDVQDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LIEQ 300


>gi|13473471|ref|NP_105038.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14024220|dbj|BAB50824.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 301

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 141/294 (47%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +GSF+ AA  L ++ S++S+ I+ LE  +G +L  R  R L LT +G+  
Sbjct: 11  EIEVFVRVVEAGSFSAAARTLRMTPSAVSKLIARLEARLGARLVSRSTRKLQLTPEGTAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   +   + E    +     +LR+ T +  G + L   L  FL  Y +I + L
Sbjct: 71  YDSGLRILADMAAAEREAAAGAAPRG-RLRVNTYVPFGVHRLIPLLPRFLERYSEISVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  ID+  + AD AIR   P+  S L+ RKL    +   AAP YL+   +PL+  +L
Sbjct: 130 VLTDSVIDLMAERADVAIRAG-PLGESRLVARKLGQSLVVVVAAPSYLEAHGKPLTPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D HNL+ FG +  + ++ + ++    R +  P      V+   ++    + G+GI+ L  
Sbjct: 189 DGHNLMGFGFV--RHIDGWPFVDAEGRAVMVPITGNTLVSDGEAMRLMTLAGAGISRLAR 246

Query: 247 YIVKDN---PNLVRIMEDVIT-PSFTVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V  +     LV ++ED         +  Y  +      +++AF +F+    R
Sbjct: 247 WHVAADIAAGRLVALLEDFNPGDEEATHAVYVGQGRHLPARVRAFLDFLAETVR 300


>gi|260899715|ref|ZP_05908110.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308106880|gb|EFO44420.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
          Length = 307

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G 
Sbjct: 4   LNDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I
Sbjct: 64  LFLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+     D AIR  +P   S+L+   L  +      A+P Y+    E  S 
Sbjct: 124 KLELSDSLTDMYTKPVDIAIRYGEP-ADSNLVVLALCGSNERILCASPEYVATHPELTSP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L +HN + +        +   W  T D    +  +S  L  N      +  + G GIA
Sbjct: 183 ADLTQHNCLCYMVADSVYNK---WTLTRDGEKEQVVVSGNLMSNDSDLPHRLAIKGKGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 +  +     LVR++ +       +Y    +    T  ++ FR+FI  K
Sbjct: 240 NKSLMDISRDLIEGRLVRVLPEWDCGPVPLYMVCADRRLLTPTIRTFRDFIQQK 293


>gi|294789434|ref|ZP_06754671.1| transcriptional regulator, LysR family [Simonsiella muelleri ATCC
           29453]
 gi|294482647|gb|EFG30337.1| transcriptional regulator, LysR family [Simonsiella muelleri ATCC
           29453]
          Length = 293

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 13/295 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V +SGSFT AAE L +S    S+ ++ LE  +  +L YR+ R L LTEQG   +
Sbjct: 7   MKVFCQVVQSGSFTRAAELLGISIPMASKHVAHLEKTIQSQLLYRNNRHLKLTEQGEIYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R        L   +  +   +VKPSG LR++  +    ++    + E+   YPD+++ L 
Sbjct: 67  RECVMALDILRQAENVVSAGTVKPSGILRVSLPLWFSCDIFANLIAEYRQQYPDVELILS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+ +D++ D  D A+RL   +   ++I + L  I  +  A+P Y+     P   ++L 
Sbjct: 127 LTNRRVDLNTDGEDLALRLSHQLPD-NVIAKFLTRIPFYLVASPDYVARYGLPEHHEDLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           KH  I     +P   +    +A   +  +  P    L+ N+   I      G G+  +P 
Sbjct: 186 KHEAI-----LPSYTDLSQLVAQYQQQTVPLPMKGTLRSNNTQMIAALIRSGVGLGYMPA 240

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           ++         L+ I+ D       +Y  Y        + ++F +F   K   WK
Sbjct: 241 WLADVDLQAGRLIHILPDYQIEGVPLYVVYANRAFMNARTRSFIDFFAEK---WK 292


>gi|264679397|ref|YP_003279304.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262209910|gb|ACY34008.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 300

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 139/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  VA + +F+ AA+ LHL+  ++S QIS LE+ +G++LF+R  R + LTE
Sbjct: 1   MDRLRLITTFMNVAEAENFSRAAQSLHLTPQAVSLQISQLESWLGVRLFHRSTRRMALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +         ++  + EL++ +   +G +++A+++ LGQ L+   L +F   YPD
Sbjct: 61  DGRVFYERCRVGLQSIDQGERELRDRASGITGSIKVASSLSLGQLLVAPLLAQFNESYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+L+  N   D      D  + +  P+ + SL+ R++        AAP YL     P 
Sbjct: 121 IRIELVTQNPWPDTVDLGMDIGV-IGGPLLNVSLVARRVGRFTHMLCAAPAYLAAKGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL +H  I         +  + + +T  + + EP  S           Q  + G+GI
Sbjct: 180 SPQELLQHCCIGLRHPRTNRIWPWTFQSTRRQTMLEPPFS-FITQDPAVQRQLVLQGAGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             L DY       +  LV +      P   V+   P+      ++K   +F++ + + +
Sbjct: 239 GQLTDYFAGPLIASGALVELPLGYSGPRLDVHVFIPQREHTPRRIKLLNDFLYERLKQF 297


>gi|261339915|ref|ZP_05967773.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317826|gb|EFC56764.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 296

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA QL +SQS++S  +  LE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRNLEARLEVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S    ++E     L+++  +P+G +R+         +L   LK F+  YPDI 
Sbjct: 65  ERLLMRLSPHLLEIEQELTALRDTRDRPAGNIRLTAGEHAMSAVLWPVLKPFMAQYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  +RL + +    +  R    + M    + +Y +    P + 
Sbjct: 125 VEVTVDNGLTDIVDGRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSANYFERYGTPDTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I     +P     + W    D      R+   L +N+    +     G G+A
Sbjct: 185 EQLQHHRCINM--RLPTRGGLYAWEFERDGRELRVRVDGQLTLNNLPQRIDAAESGLGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V+   D   L+R++E    P    +  YP   ++T       + +
Sbjct: 243 YVPEDTVREALDQGRLLRVLEAWCPPFDGYHLYYPSRRQHTTAFSLLVDAL 293


>gi|156935761|ref|YP_001439677.1| putative DNA-binding transcriptional regulator [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156534015|gb|ABU78841.1| hypothetical protein ESA_03631 [Cronobacter sakazakii ATCC BAA-894]
          Length = 308

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 129/286 (45%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVELGSFTSAARQLEMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L     E L  YP + + L+
Sbjct: 61  QGCRRMLHEVQEVHEQLYAFNNSPIGTLRIGCSSTMAQNVLASLTAEMLRDYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  ++L ++ M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSKRLGSMPMVVCAAKSYLAQAGTPEKPADLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
            H+ + +     +   +F  +A                N  +++ ++   G+GIA +P  
Sbjct: 180 NHSWLEYSV---RPDNEFELIAPEGISTRLLPQGRFVTNDPMTLSRWLKAGAGIAYVPLM 236

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++ +  +  L  +     +    VY  Y E  K   K++   N +
Sbjct: 237 WVIDEINSGELEILFPRYQSDPRPVYALYTEKDKLPLKVQVCINAL 282


>gi|160897737|ref|YP_001563319.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363321|gb|ABX34934.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 314

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 133/301 (44%), Gaps = 14/301 (4%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D  D+ R+F  VA  GSF  AA  L L ++++S  +  LE +VG +L +R  R ++LT
Sbjct: 4   AMDRLDRYRIFMQVAEMGSFIKAAHALDLPRATVSAAVQQLEEQVGARLLHRTTRQVSLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G++L      +  + E  +   Q  + + +G+L +     + + LL   L   +  +P
Sbjct: 64  ADGAQLLERVRPLLSEAEDVEQMFQARTRQATGRLHVDVPSRIARRLLAPALPGLMRRHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q+ L   ++ ID+  +  DCA+R+   +  SSL+ R L  I +   A+P YL+    P
Sbjct: 124 GLQLVLGSSDRAIDLVQEGVDCAVRVG-TLHDSSLVVRPLGCIALINCASPAYLREHGLP 182

Query: 181 LSIQELDK-HNLITFGDLIPKCMEDFNWLAT--------VDRPIGEPRISCLQVNSYLSI 231
              ++L   H  + +          + W           VD P      S +  N+  S 
Sbjct: 183 EQPRDLLHGHWSVGYASPRTGRELPWEWSGASDVDGVNGVDGPQTLAVPSRVVTNNAESY 242

Query: 232 MQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +  C  G G+  +P Y V+   D   LV ++         V   YP   + + +L  F +
Sbjct: 243 IACCRAGLGLIQIPRYDVQHLLDTGELVEVLPAHRAAPMPVALLYPHRRQRSRRLAVFID 302

Query: 289 F 289
           +
Sbjct: 303 W 303


>gi|152986508|ref|YP_001345452.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961666|gb|ABR83691.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 306

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 129/288 (44%), Gaps = 8/288 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  V  SGS T AAE+L +S++ +SR ++ LE  VG +L +R  R L+LT+ G++L  
Sbjct: 8   RVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWVGARLLHRSTRRLSLTDAGAELLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    ++ Q   Q     P G LRI +++   Q  L      F+  +P   I L +
Sbjct: 68  QCREMLAVADSMQATGQTRRDSPRGTLRITSSLSFAQAWLTRAAAAFVERFPGTAIDLQV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ I++  +  D A+R+   +   +LI R+L        AAP YL+    P   ++L  
Sbjct: 128 NSQVINLVEERIDLALRITNQL-DPNLIARRLGECRSVICAAPDYLRRHGTPRRPEDLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        +          P   P    L  N    +++    G+GI+  P Y 
Sbjct: 187 HNCLTYSYFGRSLWQ----FERDGEPTSVPVGGSLSANESTVLLEAAAAGAGISQQPLYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 +  LV ++ +       ++  Y    +    L+A  +F+  +
Sbjct: 243 AAPLIRSGRLVALLPEWSPQVLGIHAVYASRRQMPPALRALLDFLVER 290


>gi|148547085|ref|YP_001267187.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511143|gb|ABQ78003.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 300

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 129/289 (44%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F     +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L+LT +G + +
Sbjct: 7   MTCFVRTVETGSFSSAGRDLGLGQPNVSRYVAALEDHLKTRLLHRSTRKLSLTSEGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +  ++  L+   V PSG LR+A    L    +   +  FL LYP++ + L 
Sbjct: 67  ADARRILDAVAESESALKN-DVPPSGLLRVACPTALAHTFIVPEIPRFLSLYPEMTLDLQ 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +++  + AD A+R+       +L  ++L +      A+  YL     P + ++L+
Sbjct: 126 INDRFVNLVDEGADLALRIGH-FDDKTLRTKQLGSFKRVCVASSDYLAKRGTPSTPEDLE 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ I +  L       F       R +  P    L+VNS  +  +    G GIA  P++
Sbjct: 185 NHDCIIYTLLSTGATWRF-------RNVDIPVTGKLRVNSPEATRELVNAGVGIAQGPEW 237

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +    N NL  I+++   P   + F Y        +   F  FI   
Sbjct: 238 LYEAGLSNGNLKLILQEFYPPPVPIQFVYIADRLMPKRALVFMEFIAEA 286


>gi|153011305|ref|YP_001372519.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151563193|gb|ABS16690.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 309

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 129/294 (43%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +R +  V   G F+ A+ +L + +S +SR+I+ LE ++G++L  R  R   +T+ G
Sbjct: 8   DLNDMRFYVEVVEQGGFSAASRKLDMPRSRLSRRIALLEDDLGVRLIQRTTRQFAVTDIG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R    +  + +     +     +P G +R++    +    +   +  F+  YP ++
Sbjct: 68  QEFYRHCLAMMVEADAALDVIDRMRTEPQGTVRVSCPASVIYFQVGEMIARFMARYPKVK 127

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S L+ RKL        A+P ++K       
Sbjct: 128 IHLESTNRRVDVIREGFDLAIRVRFPPLEDSDLVIRKLAESEQRLVASPVFVKE-GCNAV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     + +G        ++N L         P    L     +++    + G G+ 
Sbjct: 187 PADLVDMPGLAWGS--SHNSFEWNLLGPNGTTAEIPYQPLLITEDMVALRLAALQGIGVC 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             P  +V+D+     LV ++ D    S  ++  +P        ++A  +F+  +
Sbjct: 245 QFPTMVVRDDIKTGRLVDLLPDWAPRSGIIHAAFPSRRGLLPSVRALLDFLVEE 298


>gi|172061627|ref|YP_001809279.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994144|gb|ACB65063.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 295

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 132/288 (45%), Gaps = 6/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R I G+E  +G +L  R  R L+LT+ G    
Sbjct: 7   MRLFIKVAELHSFARAATELNISNSSATRLIMGIEDRLGARLLNRTTRSLSLTDAGHLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  +     +P G L+IA  +  G ++L   +  F  L+P I  ++ 
Sbjct: 67  AQIRHVVEEIDRVEETIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTLHPAIVPEVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D  + L + I +++L+ R L  +     AAP Y++    P+   +L 
Sbjct: 127 IVDRHVDLVSEGFDVGLLLSQRISTNTLVTRPLTRLKRIVCAAPRYVEAHGAPIHPHDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +TF          F+   T  R    P  S    N+   I  + + G GIA+LPD+
Sbjct: 187 SHACLTFHADFAGEYMSFDHEPT--RVAVRPNKSA-SSNNIGLIRNWALSGMGIAVLPDF 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +V+    +  L+ ++ D       +   YP       K + F + +  
Sbjct: 244 LVEADLADGRLLALLPDYRLDDLEMNIAYPSRRHFPRKTRLFVDHLVE 291


>gi|77361112|ref|YP_340687.1| LysR transcriptional regulator [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876023|emb|CAI87245.1| putative Transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 307

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 127/298 (42%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  +   GS T AA+ L L+++  S  +  LET++ I L  R  R +
Sbjct: 1   MKVSFEQLKSMVVFAQIVEQGSLTAAAKHLGLTRAVASYHLKKLETQLEITLLNRSTRTM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   +     +  +      +++    +P G L+I+  +++G  L+   +  F  
Sbjct: 61  ALTEAGVAYYERCRIITEQANAANQQIENIKSEPQGLLKISCPVNVGMQLIVPAINSFKR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I I L L +  +DI     D AIR    +  S+L   KL T+      +P Y  + 
Sbjct: 121 QYPKINIDLQLSDDVVDIIKHGFDFAIR-GVALSDSNLQATKLTTMSTCICGSPDYFAHF 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +P +  EL +H  + +  L  K +     L+   +         L  N+  +   +   
Sbjct: 180 GKPKNPVELAQHQWVVY-QLGSKTLT----LSKEGKKHDITMQGGLSTNNAAARTAFVEA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI  +P Y          L  I++D  +    +Y  +P     + KL+ F +++  
Sbjct: 235 GHGIGRIPLYDAWPKVQAGLLEIILDDYKSKDIELYGVFPPGAAGSKKLRLFIDYLKA 292


>gi|117922362|ref|YP_871554.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614694|gb|ABK50148.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 320

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 141/288 (48%), Gaps = 10/288 (3%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    + VF  +A  GS + AA QL+LS S++S+Q++ LE ++GI LF+R+ R LTL
Sbjct: 1   MNRNMVKGMIVFAAIAEKGSMSAAATQLNLSSSAVSQQVAKLEMDMGISLFHRNTRHLTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G+  +    ++   +E+ + +L      PSGKL+IA  +  G  LL   L   L  +
Sbjct: 61  TEAGALFYENCIKIIKIVESAEQQLHALKGTPSGKLKIAAPVGFGGGLLSQPLAHLLAAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + L L +  IDI  +  D AI +  P+  S+LI R L    M   AAP Y+   + 
Sbjct: 121 PQISLNLQLQDGPIDIVNEGIDLAICIG-PLSDSNLIARPLADWRMLLCAAPSYIPLHQS 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                +L   N I+     P+ +        ++ P        + VN+  +++Q  + G 
Sbjct: 180 LQHPADLQGFNRISHSYAKPEFLTHLQTQERIELPA-----QRINVNNMQTLIQLTLDGL 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G A+LP+  V     +  LV ++ +    +++VY       K   K+K
Sbjct: 235 GFAVLPEPEVHQYLASGQLVTLLPEWSLRTYSVYSVTSARDKQPAKVK 282


>gi|110635169|ref|YP_675377.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286153|gb|ABG64212.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 306

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 131/296 (44%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L VF  V   G  + A   L +S +  S +I  LE  +G++L  R  R LT TE G 
Sbjct: 4   LDNLAVFVRVVELGGLSAAGRDLRISPAVASNRIKELEKHLGVRLLNRTTRQLTATEHGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V   L+  +  +   S +P G +R+   + LG+ L+   + EF   YP I++
Sbjct: 64  VFYDGAKRVLEALDEAEGAVAALSGQPRGTIRVTAPLGLGKRLIASGIPEFRERYPQIEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++D+DI  +  D A +L   +++SSL  R ++       A+P YL+   EP   +
Sbjct: 124 RLRLSDRDVDIMREGIDVAFKLGL-LENSSLRMRGIMDCERVLAASPVYLERRGEPERPE 182

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  ++H+ +      P   E F  LAT + P           +    I  + + G GI 
Sbjct: 183 QLVEEQHDCLML--RFPGVREYFWTLATPEGPKKFEVRGPFDTDDGDVITGWALAGHGII 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             P + ++    +  L  I+      + T+   YP       K++   +F+  + +
Sbjct: 241 NKPRFEIEPFIRDGRLKIILAKTPPTTVTLAAVYPHKKLQDPKVRLLVDFMAERCQ 296


>gi|284920104|emb|CBG33163.1| LysR-family transcriptional regulator [Escherichia coli 042]
          Length = 307

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 145/302 (48%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 1   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 61  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 121 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAIPVSPLIKLVTVASPDYLKE 179

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +  +A  +             N   S+++ 
Sbjct: 180 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEFEIEVSGKYISNDDESMIRM 239

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 240 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 299

Query: 292 LK 293
            K
Sbjct: 300 EK 301


>gi|50122298|ref|YP_051465.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612824|emb|CAG76274.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 293

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F  V  +GSF+ A+ +L + Q ++S+ I  LE ++   L  R  RGLT TE
Sbjct: 1   MDRLSALETFICVFETGSFSAASRRLGIGQPAVSKAIMQLENQLVTLLLLRSTRGLTPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +   +     L   Q  +   S   SG+LRI   +   +  +   L EF+  +P+
Sbjct: 61  AGQRFYEQIAPALKMLGEAQDHIVSGSASLSGRLRICAPVTFARLHIMPRLHEFMAEHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + +ILD++ ID+  +  D A+RL + ++ SSLI ++L +  M   A P Y      P 
Sbjct: 121 LNVDVILDDRPIDLIAEGIDVALRLGE-MKDSSLIAQRLASCSMRLLATPDYFARHGIPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S   L  H  + +          F+   T        RI   +V++   +    + G+G+
Sbjct: 180 SPDALAAHPAVIYLQGERTDRWIFSQDGTQTTVFPNGRI---RVSAAEGVRAAVLSGAGL 236

Query: 242 ALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+  +++       V++   ++        ++  YP     + + + F  F+
Sbjct: 237 AVASEWMFAPELENVQVVTALDSWTLGKMDLWAVYPGGRMTSARARIFTGFV 288


>gi|257485828|ref|ZP_05639869.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331011001|gb|EGH91057.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 300

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 127/297 (42%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  +ISR+++ LE ++G++LF+R  R ++LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    E  +  L+  +   SG LR+      GQ ++   L   +L  P +
Sbjct: 61  GEVFLPHAKTILEASEAARTTLKADAGSASGVLRVTAPSVFGQTVIMPLLPALMLENPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI+    D AIR+   I+ S+L+ R L         +P YL    +P  
Sbjct: 121 SIDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCVSPDYLARHGKPAL 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++EL  H  I    +                PI          NS  ++   C  G G+A
Sbjct: 180 LEELRHHPCIALHAMPWWS------FTRNGEPITIRAQGPFSANSVEAVRTACKQGIGLA 233

Query: 243 LLPDYIVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +L  + V+      +L ++  ED +    +V    P   +   +++ F + +    +
Sbjct: 234 MLTYWDVRQEINEGSLQQVDFEDAMPEQLSVTAVLPTRQRVPHRVRLFIDRLEAALK 290


>gi|168235950|ref|ZP_02661008.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194737137|ref|YP_002115861.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|204928105|ref|ZP_03219305.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194712639|gb|ACF91860.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290665|gb|EDY30019.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204322427|gb|EDZ07624.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 303

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARHPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|254363086|ref|ZP_04979143.1| possible LysR family transcriptional regulator [Mannheimia
           haemolytica PHL213]
 gi|153094753|gb|EDN75539.1| possible LysR family transcriptional regulator [Mannheimia
           haemolytica PHL213]
          Length = 291

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 136/285 (47%), Gaps = 4/285 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + LR F +VA++ SFT AA Q+ +SQS++S  I G+E  + IKLF+R  R ++ T
Sbjct: 1   MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEERLQIKLFHRTTRSISTT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L++    ++ +++     L E      G LRI     + +++L     EF+  YP
Sbjct: 61  EAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEHVFRDVLADKFAEFVKRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L+ +++ +DI  +  D  IRL   +    +  R    + M A A+P+YL     P
Sbjct: 121 EVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRISPDVKMTAAASPNYLAQHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
            +  +L +H+ +         +  + +   + + I +      L  N+   +  Y   G 
Sbjct: 181 KTPFDLTEHHCLKHRLATLGGILAWEFRDPITKKIVKFQPQGNLTANNGFLLQHYAKQGL 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTG 281
           GI   P   ++   DN +LV I+ D        +  YP   +N+ 
Sbjct: 241 GILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLYYPNRRQNSP 285


>gi|296314843|ref|ZP_06864784.1| transcriptional regulator, LysR family [Neisseria polysaccharea
           ATCC 43768]
 gi|296838343|gb|EFH22281.1| transcriptional regulator, LysR family [Neisseria polysaccharea
           ATCC 43768]
          Length = 303

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 141/292 (48%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    +L+   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSLICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L     P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLIRNGVPKTPEEVT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +   +       + ++      +  +         ++ ++ L + +    G+ I   P +
Sbjct: 186 RLPAVLPTYTNQQKLDITR--KSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPFW 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             + +     LVR++ +   P+  +   Y +    + K+++F +F+  K  +
Sbjct: 244 AAEHDLRCGTLVRLLPEYTVPTDRLNAVYADRAFLSAKVRSFIDFLNEKIEN 295


>gi|237808402|ref|YP_002892842.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500663|gb|ACQ93256.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 306

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   A+S SFT AAEQL +S+S++ + IS LE  +G KLF+R  R L+LT  G       
Sbjct: 16  FVTTAQSQSFTQAAEQLGISKSAVGKSISQLEQRLGTKLFHRTTRKLSLTTAGEAYFEGC 75

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
               + L + +  +      PSG ++I      G+ ++   L      +P++++ L  ++
Sbjct: 76  LVALNTLNSAEATVLHRQNVPSGNIKIDMPAAFGRAVMMPILLGIEEQFPELKLTLTFND 135

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           K ID   +  D  IR  +   S+ L+ +KL    +   A+P YL+    P  + +L KH 
Sbjct: 136 KIIDPIEEGIDLCIRFGEVKDSTDLVAKKLGYQRLVMCASPDYLQRFGTPADLDDLKKHR 195

Query: 191 LITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
            I    +  +     +WL        +        Q++   +++Q C+ GSG+   P+ +
Sbjct: 196 CI----MGYRKGSPLSWLVKDKHGNDVRFNPTPTHQISDGDAMIQACLAGSGLTQFPESL 251

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +  +     L  ++++ I     +   +P+       ++   + +  +A D  F
Sbjct: 252 LTQHIKEGKLRIVLKECIPAPIELNVIWPKTRHLLPNVRYIVDELARQAEDGAF 305


>gi|149376931|ref|ZP_01894686.1| transcriptional regulatory protein [Marinobacter algicola DG893]
 gi|149358823|gb|EDM47292.1| transcriptional regulatory protein [Marinobacter algicola DG893]
          Length = 303

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 130/299 (43%), Gaps = 12/299 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  +   GS + AA++L  S +++ R ++ LE  +G++L  R  R + LT+
Sbjct: 1   MDKLKAMSTFVAIVDQGSLSAAADKLDRSPAAVVRTLASLEQHLGVRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +       +   ++T +  L      P+GKL I   +  G+  +   L ++L   P 
Sbjct: 61  EGREYLDHCRRILADIQTAEFRLDSRRADPAGKLTITAPVTFGRLHIAPLLNQWLKQNPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +LIL ++ +D+  +  D A+R+   +  SSL+ R++ +      A+P  ++    P 
Sbjct: 121 MSAELILLDRVVDVIEEGFDLALRIGH-LADSSLVARQVGSTPYVLCASPELIEQRGRPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             ++L     + F            W   V   + E RI   +  N   + +     G G
Sbjct: 180 HPEQLSDWPTVGFTPA------GEVWQFQVKGELWEQRIRPVVSANQIDTELAAAREGLG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  +  Y  +++     LV ++ +   P+  V   +P +   + +++ F + +    ++
Sbjct: 234 ICRVLAYQAQEDFERGTLVPVLTEYNAPALPVQLVFPHSRLLSPRVRQFLDAVVGPLQE 292


>gi|21241076|ref|NP_640658.1| LysR family transcriptional regulator [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106372|gb|AAM35194.1| transcriptional regulator lysR family [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 317

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 127/290 (43%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L     + R GSFT AA +L +SQS++S  I GLE  +G++L  R  R +  TE G
Sbjct: 25  NFKDLLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEATLGLRLLTRTTRSVAPTEAG 84

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     L E    P+G +RI  T    + +L   L   L  YP+I+
Sbjct: 85  ERLIQTVAPRFAEIEEALSALGEMRNTPAGTVRITATDYAARAILWPKLSRLLRDYPEIK 144

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++DN   DI  D  D  +RL   ++   +  R    + M   AAP YL+    P + 
Sbjct: 145 VEIVVDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMAIVAAPSYLERRPIPKTP 204

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H+ I         +  +  L    R +       L  N     +   V G GIA 
Sbjct: 205 QDLTAHSCINLRMKTAGGIYAWE-LEKNGREVIVRVDGQLTFNGIYEALDAAVDGFGIAF 263

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + + + +     L  +M+D       ++  YP    ++       + +
Sbjct: 264 VQEDLARPHIKAGRLRWVMKDWSPTWPGLHAFYPSRRHSSSAFNLVVDAL 313


>gi|319793586|ref|YP_004155226.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596049|gb|ADU37115.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 311

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 133/299 (44%), Gaps = 9/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D      VF  V   GSFT AA+ L  S ++++R ++ LE  +  +L  R +R L+LTE
Sbjct: 1   MDRLRAYEVFVTVVARGSFTKAADALDTSPANVTRYVNELEAHLRTRLINRTSRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +  ++  T+     +S++P G+LRI   +  G  +L     +F+  YPD
Sbjct: 61  GGEALFDRAKSILEEVAETEALATTASLQPRGRLRINAPLSFGSLVLAPLWPKFMAKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L ++ +DI  +  D AIR+ +   S + I R+L        A+P YL +   P 
Sbjct: 121 VELDIALIDRVVDIVEEGYDLAIRISR-TSSGNHIARRLGRSQNLVCASPDYLSSHGMPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
              +L +H  + +         D    A     +   R+   L+ N+  +     + G+G
Sbjct: 180 VPADLSRHLCLGYTY---GATSDEWQFAGPGGSLESVRVRWALRANNGETARAAALAGAG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I   P +++ ++     LV +M     P   +   Y      + K++   +F+    +D
Sbjct: 237 IIWQPSFVIGEDVRTGRLVEVMPGYHMPPVDILAIYASRRHLSAKVRVMVDFLVEAFQD 295


>gi|312170846|emb|CBX79106.1| Uncharacterized HTH-type transcriptional regulator yhjC [Erwinia
           amylovora ATCC BAA-2158]
          Length = 305

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 130/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   GSFT AA+Q+ LS S++S+ ++ LE E+ +KL  R  R L LTE G 
Sbjct: 4   LKGMSVFTKVVELGSFTAAAKQMQLSVSAVSQIVARLENELQVKLLNRSTRNLGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +  + +    +L   +  P G LRI ++  + QNLL    KE L  YP + +
Sbjct: 64  IYFQGCRRMMAEAQQVHEQLWAFNNTPVGTLRIGSSSTMSQNLLAPMAKEILQEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+   +  D+  D  D AIR+   +  SSL  ++L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIRAPDLIADGLDLAIRVGA-LPDSSLFAKRLGSMPMVVCAAKAYLLQFGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++  H+ + +     +   DF+ ++     I          N   +++++   G+GIA +
Sbjct: 183 DISNHSWLEYSV---RPDNDFDLISPEGIAIRLSPQGRFATNDAQTLIRWLKAGTGIAYV 239

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   + D  N   +        +    VY  Y +  K   +++   N++
Sbjct: 240 PLMWIIDEINAGEVEILFAHYQSVPRPVYALYSQKDKLPLRVQVCINYL 288


>gi|293611508|ref|ZP_06693797.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826158|gb|EFF84534.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122482|gb|ADY82005.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 299

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 143/297 (48%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYSLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QL++ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL    +
Sbjct: 121 EIRLQLMVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGD 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLG 238
             + ++L +H +++  +   + ++    L   D    + ++S + +  +   + Q     
Sbjct: 181 IKNPEQLSEHRILSLSE---EHLDQQFLLHGPDNQQKKIKVSPIVMGTNIHMLAQLASQN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIALLP+   +D   +  LV+I+ +   P   ++  YP        ++ F +++  
Sbjct: 238 CGIALLPESAAEDFLKSGQLVQILPEWKAPHGILHAVYPSRRGLLPAVRVFIDYLVE 294


>gi|296115560|ref|ZP_06834187.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977809|gb|EFG84560.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 297

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 123/290 (42%), Gaps = 10/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VA   SFT AA +L  SQS++S  I  LET + ++L  R  R ++ TE G +L
Sbjct: 8   DLNAFMTVAEEQSFTRAAAKLGTSQSTLSHTIRRLETRLNVRLLTRTTRRVSPTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     + +    L E S KPSG +RI T+      LL   L + L  YPD+ ++L
Sbjct: 68  LTALVPALDMISSEIASLSELSEKPSGTVRITTSEHAANTLLWPALSKLLPKYPDLHVEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D+   DI  +  D  +RL + I    +       + M    AP Y +    P   Q+L
Sbjct: 128 AVDSSLTDIVAERFDAGVRLEETIARDMIAVPIGPPLRMAVVGAPSYFERHPVPRKPQDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  I     +P     + W     +     R+   L  N+   I Q  + G G+A + 
Sbjct: 188 SHHTCINL--RLPTSGGVYAWELEKGKRALRVRVDGQLTFNNVPMIRQAALGGFGLACIM 245

Query: 246 D-----YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     Y+   +  LVR++ED   P    +  YP   +++   +     +
Sbjct: 246 EDQSAPYLA--DGRLVRVLEDWCPPFPGYHLYYPSRRQSSAAFRLVVEAL 293


>gi|295681411|ref|YP_003609985.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295441306|gb|ADG20474.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 296

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 134/291 (46%), Gaps = 8/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +L  F+ V  +G F+ AA +   SQS+IS+ I  LE  +G+ LF R  R +TLT+
Sbjct: 1   MDRFHELNAFFAVVEAGGFSAAARRTGESQSAISKSIGALEKRLGVLLFNRSTRRVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG + +  T  +  ++E    EL  S++  SG +RIA+    G+  +   + E L  +P 
Sbjct: 61  QGQRYYERTKPLLDEIEVADSELTSSTLDVSGLVRIASASTFGRLHVLPLIPELLSRHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L+L +   D+  D  D AIR+   I     + +++ +  +    +  Y +    P 
Sbjct: 121 LRVDLVLSDFVRDMVEDRIDLAIRVGS-INDPDSVVKRIASTPLVCVGSRRYFEQYGVPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  HN + +G L+      F+           P    L  NS  +I    + G GI
Sbjct: 180 EPAELANHNCLLYGGLLESANWPFH---GPRGRFSVPVRGNLSSNSVETIRSAVLAGVGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L     + D   +P++V +++D I  +  V   +P       +++   +F
Sbjct: 237 GLFAKLSLADELKHPDIVTVLDDFIRDARDVSVIWPRRRFVPARVRRVTDF 287


>gi|27365341|ref|NP_760869.1| putative transcriptional regulator, LysR family [Vibrio vulnificus
           CMCP6]
 gi|320155726|ref|YP_004188105.1| cyn operon transcriptional activator [Vibrio vulnificus MO6-24/O]
 gi|27361488|gb|AAO10396.1| putative transcriptional regulator, LysR family [Vibrio vulnificus
           CMCP6]
 gi|319931038|gb|ADV85902.1| cyn operon transcriptional activator [Vibrio vulnificus MO6-24/O]
          Length = 291

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDAVNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  R  S +  +L  T  E+ +     SGK++I+T  +L + ++   L  F+  YP+I
Sbjct: 61  GERFFRECSPLLQRLTNTAEEITDECRGASGKIKISTPYNLTKRMMMPMLNGFMSQYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L  ++    +     D   R+  P + SSLI RK+ ++     A+P Y+     P  
Sbjct: 121 NIELTTESNADQLDPTEWDVIFRVG-PQRDSSLIARKIGSVKDILVASPEYVNAHPMPTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H L+         +  +  + +    +        Q N+   +   C  G GI 
Sbjct: 180 AEDLHDHFLL-----KGHPLLKWTLINSKGETVVNVDRGRFQANALNVVRSACSEGLGIT 234

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD ++K+   + +LVRI+ D       +Y  Y        K++ F +++  
Sbjct: 235 LMPDVMIKEYIADGSLVRILPDWSANPRDIYMLYNHKDHLPEKVRLFIDYVIA 287


>gi|53717282|ref|YP_105356.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|124381629|ref|YP_001024686.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126445948|ref|YP_001079021.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|254355695|ref|ZP_04971975.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52423252|gb|AAU46822.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|124289649|gb|ABM98918.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126238802|gb|ABO01914.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|148023788|gb|EDK82850.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
          Length = 336

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 123/288 (42%), Gaps = 5/288 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G
Sbjct: 3   TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 63  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 123 IELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 183 RDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LP Y   ++    NLVR++         VY  YP       K++ +  
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVE 288


>gi|15833370|ref|NP_312143.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7
           str. Sakai]
 gi|16131133|ref|NP_417710.1| transcriptional regulator for aaeXAB operon [Escherichia coli str.
           K-12 substr. MG1655]
 gi|26249824|ref|NP_755864.1| putative DNA-binding transcriptional regulator [Escherichia coli
           CFT073]
 gi|82545527|ref|YP_409474.1| DNA-binding transcriptional regulator [Shigella boydii Sb227]
 gi|89110005|ref|AP_003785.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli str. K-12 substr. W3110]
 gi|91212663|ref|YP_542649.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UTI89]
 gi|110643478|ref|YP_671208.1| putative DNA-binding transcriptional regulator [Escherichia coli
           536]
 gi|117625527|ref|YP_858850.1| putative DNA-binding transcriptional regulator [Escherichia coli
           APEC O1]
 gi|157158690|ref|YP_001464716.1| putative DNA-binding transcriptional regulator [Escherichia coli
           E24377A]
 gi|157162721|ref|YP_001460039.1| putative DNA-binding transcriptional regulator [Escherichia coli
           HS]
 gi|170018513|ref|YP_001723467.1| putative DNA-binding transcriptional regulator [Escherichia coli
           ATCC 8739]
 gi|170082774|ref|YP_001732094.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170684070|ref|YP_001745515.1| putative DNA-binding transcriptional regulator [Escherichia coli
           SMS-3-5]
 gi|187776433|ref|ZP_02802645.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188025260|ref|ZP_02777166.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4113]
 gi|188496442|ref|ZP_03003712.1| HTH-type transcriptional activator aaeR [Escherichia coli 53638]
 gi|189010324|ref|ZP_02806394.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189401947|ref|ZP_02779232.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189403235|ref|ZP_02794106.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404349|ref|ZP_02788787.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189404739|ref|ZP_02811136.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC869]
 gi|189406044|ref|ZP_02825963.2| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC508]
 gi|191168186|ref|ZP_03029982.1| transcriptional activator AaeR [Escherichia coli B7A]
 gi|191173840|ref|ZP_03035361.1| transcriptional activator AaeR [Escherichia coli F11]
 gi|193065338|ref|ZP_03046409.1| transcriptional activator AaeR [Escherichia coli E22]
 gi|193070313|ref|ZP_03051256.1| transcriptional activator AaeR [Escherichia coli E110019]
 gi|194429124|ref|ZP_03061654.1| transcriptional activator AaeR [Escherichia coli B171]
 gi|194439171|ref|ZP_03071252.1| transcriptional activator AaeR [Escherichia coli 101-1]
 gi|208809727|ref|ZP_03252064.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814039|ref|ZP_03255368.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820676|ref|ZP_03260996.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400033|ref|YP_002272706.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920713|ref|YP_002294797.1| putative DNA-binding transcriptional regulator [Escherichia coli
           SE11]
 gi|215488551|ref|YP_002330982.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217327884|ref|ZP_03443967.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555807|ref|YP_002388720.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|218560305|ref|YP_002393218.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|218696942|ref|YP_002404609.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|218702008|ref|YP_002409637.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI39]
 gi|218706857|ref|YP_002414376.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UMN026]
 gi|227887958|ref|ZP_04005763.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|237706010|ref|ZP_04536491.1| transcriptional activator AaeR [Escherichia sp. 3_2_53FAA]
 gi|238902344|ref|YP_002928140.1| putative DNA-binding transcriptional regulator, efflux system
           [Escherichia coli BW2952]
 gi|253771927|ref|YP_003034758.1| DNA-binding transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038403|ref|ZP_04872461.1| transcriptional activator AaeR [Escherichia sp. 1_1_43]
 gi|254163180|ref|YP_003046288.1| putative DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|254795186|ref|YP_003080023.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|260846050|ref|YP_003223828.1| putative DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O103:H2 str. 12009]
 gi|260857363|ref|YP_003231254.1| putative DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O26:H11 str. 11368]
 gi|260869987|ref|YP_003236389.1| putative DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O111:H- str. 11128]
 gi|291284611|ref|YP_003501429.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406846|ref|ZP_06650772.1| DNA-binding transcriptional regulator [Escherichia coli FVEC1412]
 gi|293412611|ref|ZP_06655334.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293416667|ref|ZP_06659306.1| DNA-binding transcriptional regulator [Escherichia coli B185]
 gi|293449568|ref|ZP_06663989.1| DNA-binding transcriptional regulator [Escherichia coli B088]
 gi|298382587|ref|ZP_06992184.1| DNA-binding transcriptional regulator [Escherichia coli FVEC1302]
 gi|300817505|ref|ZP_07097721.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300824395|ref|ZP_07104509.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300898010|ref|ZP_07116383.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300904436|ref|ZP_07122282.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300917440|ref|ZP_07134104.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300926014|ref|ZP_07141837.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300929938|ref|ZP_07145378.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300937357|ref|ZP_07152193.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300958723|ref|ZP_07170842.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300979744|ref|ZP_07174694.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|300991028|ref|ZP_07179449.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|301022180|ref|ZP_07186097.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|301047913|ref|ZP_07194960.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|301304293|ref|ZP_07210407.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|301326322|ref|ZP_07219692.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|301645526|ref|ZP_07245460.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|307313058|ref|ZP_07592684.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|309793820|ref|ZP_07688246.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|312968426|ref|ZP_07782635.1| HTH-type transcriptional activator aaeR [Escherichia coli 2362-75]
 gi|312972487|ref|ZP_07786661.1| HTH-type transcriptional activator aaeR [Escherichia coli 1827-70]
 gi|331643942|ref|ZP_08345073.1| HTH-type transcriptional activator AaeR [Escherichia coli H736]
 gi|331649035|ref|ZP_08350123.1| HTH-type transcriptional activator AaeR [Escherichia coli M605]
 gi|331654841|ref|ZP_08355841.1| HTH-type transcriptional activator AaeR [Escherichia coli M718]
 gi|331664851|ref|ZP_08365756.1| HTH-type transcriptional activator AaeR [Escherichia coli TA143]
 gi|331670066|ref|ZP_08370911.1| HTH-type transcriptional activator AaeR [Escherichia coli TA271]
 gi|331674760|ref|ZP_08375519.1| HTH-type transcriptional activator AaeR [Escherichia coli TA280]
 gi|331679317|ref|ZP_08379989.1| HTH-type transcriptional activator AaeR [Escherichia coli H591]
 gi|331684884|ref|ZP_08385476.1| HTH-type transcriptional activator AaeR [Escherichia coli H299]
 gi|332279928|ref|ZP_08392341.1| transcriptional activator AaeR [Shigella sp. D9]
 gi|54040282|sp|P67663|AAER_ECOL6 RecName: Full=HTH-type transcriptional activator AaeR
 gi|54040283|sp|P67664|AAER_ECO57 RecName: Full=HTH-type transcriptional activator AaeR
 gi|54042784|sp|P67662|AAER_ECOLI RecName: Full=HTH-type transcriptional activator AaeR
 gi|26110252|gb|AAN82438.1|AE016767_198 Hypothetical transcriptional regulator yhcS [Escherichia coli
           CFT073]
 gi|606182|gb|AAA58045.1| ORF_o309 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789639|gb|AAC76275.1| transcriptional regulator for aaeXAB operon [Escherichia coli str.
           K-12 substr. MG1655]
 gi|13363589|dbj|BAB37539.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. Sakai]
 gi|81246938|gb|ABB67646.1| QseA [Shigella boydii Sb227]
 gi|85676036|dbj|BAE77286.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli str. K12 substr. W3110]
 gi|91074237|gb|ABE09118.1| putative transcriptional regulator LYSR-type [Escherichia coli
           UTI89]
 gi|110345070|gb|ABG71307.1| hypothetical transcriptional regulator YhcS [Escherichia coli 536]
 gi|115514651|gb|ABJ02726.1| putative DNA-binding transcriptional regulator, efflux system
           [Escherichia coli APEC O1]
 gi|157068401|gb|ABV07656.1| transcriptional activator AaeR [Escherichia coli HS]
 gi|157080720|gb|ABV20428.1| transcriptional activator AaeR [Escherichia coli E24377A]
 gi|169753441|gb|ACA76140.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|169890609|gb|ACB04316.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170521788|gb|ACB19966.1| transcriptional activator AaeR [Escherichia coli SMS-3-5]
 gi|187767173|gb|EDU31017.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013928|gb|EDU52050.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4113]
 gi|188491641|gb|EDU66744.1| HTH-type transcriptional activator aaeR [Escherichia coli 53638]
 gi|189000995|gb|EDU69981.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358741|gb|EDU77160.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361858|gb|EDU80277.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366142|gb|EDU84558.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373779|gb|EDU92195.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC869]
 gi|189376862|gb|EDU95278.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC508]
 gi|190901794|gb|EDV61547.1| transcriptional activator AaeR [Escherichia coli B7A]
 gi|190905890|gb|EDV65508.1| transcriptional activator AaeR [Escherichia coli F11]
 gi|192926979|gb|EDV81602.1| transcriptional activator AaeR [Escherichia coli E22]
 gi|192956372|gb|EDV86832.1| transcriptional activator AaeR [Escherichia coli E110019]
 gi|194412849|gb|EDX29141.1| transcriptional activator AaeR [Escherichia coli B171]
 gi|194421867|gb|EDX37873.1| transcriptional activator AaeR [Escherichia coli 101-1]
 gi|208729528|gb|EDZ79129.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735316|gb|EDZ84003.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740799|gb|EDZ88481.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161433|gb|ACI38866.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           EC4115]
 gi|209757698|gb|ACI77161.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209757700|gb|ACI77162.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209757702|gb|ACI77163.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209757704|gb|ACI77164.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209757706|gb|ACI77165.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209913972|dbj|BAG79046.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|215266623|emb|CAS11062.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli O127:H6 str. E2348/69]
 gi|217320251|gb|EEC28676.1| transcriptional activator AaeR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353674|emb|CAU99915.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli 55989]
 gi|218362575|emb|CAR00199.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli IAI1]
 gi|218367074|emb|CAR04845.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli S88]
 gi|218371994|emb|CAR19850.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli IAI39]
 gi|218433954|emb|CAR14871.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli UMN026]
 gi|226840027|gb|EEH72048.1| transcriptional activator AaeR [Escherichia sp. 1_1_43]
 gi|226899050|gb|EEH85309.1| transcriptional activator AaeR [Escherichia sp. 3_2_53FAA]
 gi|227835354|gb|EEJ45820.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|238862333|gb|ACR64331.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli BW2952]
 gi|242378780|emb|CAQ33571.1| quorum sensing transcriptional regulator of LYSR-type [Escherichia
           coli BL21(DE3)]
 gi|253322971|gb|ACT27573.1| putative DNA-binding transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975081|gb|ACT40752.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli B str. REL606]
 gi|253979237|gb|ACT44907.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli BL21(DE3)]
 gi|254594586|gb|ACT73947.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14359]
 gi|257756012|dbj|BAI27514.1| predicted DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O26:H11 str. 11368]
 gi|257761197|dbj|BAI32694.1| predicted DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O103:H2 str. 12009]
 gi|257766343|dbj|BAI37838.1| predicted DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O111:H- str. 11128]
 gi|260447729|gb|ACX38151.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|281180277|dbj|BAI56607.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|284923259|emb|CBG36353.1| LysR-family transcriptional regulator [Escherichia coli 042]
 gi|290764484|gb|ADD58445.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322658|gb|EFE62087.1| DNA-binding transcriptional regulator [Escherichia coli B088]
 gi|291426852|gb|EFE99884.1| DNA-binding transcriptional regulator [Escherichia coli FVEC1412]
 gi|291432023|gb|EFF05006.1| DNA-binding transcriptional regulator [Escherichia coli B185]
 gi|291469382|gb|EFF11873.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294490016|gb|ADE88772.1| transcriptional activator AaeR [Escherichia coli IHE3034]
 gi|298277727|gb|EFI19243.1| DNA-binding transcriptional regulator [Escherichia coli FVEC1302]
 gi|300300256|gb|EFJ56641.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300307962|gb|EFJ62482.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|300314633|gb|EFJ64417.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300358281|gb|EFJ74151.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300397647|gb|EFJ81185.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|300403598|gb|EFJ87136.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300406949|gb|EFJ90487.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|300415323|gb|EFJ98633.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300417958|gb|EFK01269.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300457576|gb|EFK21069.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300462161|gb|EFK25654.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300523124|gb|EFK44193.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300529803|gb|EFK50865.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300840419|gb|EFK68179.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|300846966|gb|EFK74726.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|301076210|gb|EFK91016.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|306906969|gb|EFN37477.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|307555329|gb|ADN48104.1| transcriptional regulator [Escherichia coli ABU 83972]
 gi|308122777|gb|EFO60039.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|309703664|emb|CBJ03005.1| LysR-family transcriptional regulator [Escherichia coli ETEC
           H10407]
 gi|310334864|gb|EFQ01069.1| HTH-type transcriptional activator aaeR [Escherichia coli 1827-70]
 gi|312286644|gb|EFR14555.1| HTH-type transcriptional activator aaeR [Escherichia coli 2362-75]
 gi|315062543|gb|ADT76870.1| predicted DNA-binding transcriptional regulator, efflux system
           [Escherichia coli W]
 gi|315137828|dbj|BAJ44987.1| putative DNA-binding transcriptional regulator [Escherichia coli
           DH1]
 gi|315257168|gb|EFU37136.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|315289017|gb|EFU48415.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|315294783|gb|EFU54126.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
 gi|315300894|gb|EFU60114.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
 gi|315617054|gb|EFU97664.1| HTH-type transcriptional activator aaeR [Escherichia coli 3431]
 gi|323154453|gb|EFZ40654.1| HTH-type transcriptional activator aaeR [Escherichia coli EPECa14]
 gi|323162930|gb|EFZ48765.1| HTH-type transcriptional activator aaeR [Escherichia coli E128010]
 gi|323173499|gb|EFZ59128.1| HTH-type transcriptional activator aaeR [Escherichia coli LT-68]
 gi|323178587|gb|EFZ64163.1| HTH-type transcriptional activator aaeR [Escherichia coli 1180]
 gi|323189144|gb|EFZ74428.1| HTH-type transcriptional activator aaeR [Escherichia coli RN587/1]
 gi|323376869|gb|ADX49137.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323936219|gb|EGB32512.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1520]
 gi|323941663|gb|EGB37842.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|323946909|gb|EGB42925.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|323951245|gb|EGB47120.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323957616|gb|EGB53330.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
 gi|323961108|gb|EGB56722.1| LysR substrate binding domain-containing protein [Escherichia coli
           H489]
 gi|323966422|gb|EGB61856.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|323970341|gb|EGB65611.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
 gi|323979046|gb|EGB74124.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
 gi|324009105|gb|EGB78324.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
 gi|324015838|gb|EGB85057.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
 gi|324018384|gb|EGB87603.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
 gi|324119602|gb|EGC13484.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
 gi|327251336|gb|EGE63025.1| HTH-type transcriptional activator aaeR [Escherichia coli STEC_7v]
 gi|331037413|gb|EGI09637.1| HTH-type transcriptional activator AaeR [Escherichia coli H736]
 gi|331042782|gb|EGI14924.1| HTH-type transcriptional activator AaeR [Escherichia coli M605]
 gi|331048223|gb|EGI20300.1| HTH-type transcriptional activator AaeR [Escherichia coli M718]
 gi|331058099|gb|EGI30081.1| HTH-type transcriptional activator AaeR [Escherichia coli TA143]
 gi|331062979|gb|EGI34893.1| HTH-type transcriptional activator AaeR [Escherichia coli TA271]
 gi|331068199|gb|EGI39595.1| HTH-type transcriptional activator AaeR [Escherichia coli TA280]
 gi|331073382|gb|EGI44705.1| HTH-type transcriptional activator AaeR [Escherichia coli H591]
 gi|331078499|gb|EGI49705.1| HTH-type transcriptional activator AaeR [Escherichia coli H299]
 gi|332090977|gb|EGI96068.1| HTH-type transcriptional activator aaeR [Shigella boydii 3594-74]
 gi|332102280|gb|EGJ05626.1| transcriptional activator AaeR [Shigella sp. D9]
          Length = 309

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++++++   G+GIA +
Sbjct: 183 DLSSHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P  +++ +     L  ++    +    VY  Y E  K   K++   N
Sbjct: 240 PLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 286


>gi|241764124|ref|ZP_04762160.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241366530|gb|EER61023.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 300

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 135/295 (45%), Gaps = 4/295 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  SFT AA QL +SQS++S  I  LE  +G++L  R  R ++ T  G
Sbjct: 5   NYNDLLAFMAVAREKSFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVSPTVAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     + E S KP+G +RI TT    + +L   L + L  YP I+
Sbjct: 65  ERLMQNVAPRFQEIEAELTAIGELSDKPAGTVRITTTEHAARTVLWPKLAKLLPEYPGIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I++++  +I  +  D  +RL   +   +   R    + +   A+P YL     P + 
Sbjct: 125 VEMIVESRLAEIVTERYDMGVRLGDTLTGDTTAVRISADMPVAIVASPAYLAQYPAPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H+ I    +    +  +  L    + +       L  N  + I+   + G G+  
Sbjct: 185 QDLIHHSCINLRLMSRGGLYAWE-LKKGKQRVNAHVEGQLVFNEPMQILDAALAGFGLGY 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + + + +       L +++ D        + CYP   + +  +    + + L A+
Sbjct: 244 VLEDMARPYVTQGRLRQVLMDWCPAFPGYHICYPNRSQPSRAMSVLIDALRLPAK 298


>gi|149907847|ref|ZP_01896515.1| transcriptional regulator, LysR family protein [Moritella sp. PE36]
 gi|149808853|gb|EDM68784.1| transcriptional regulator, LysR family protein [Moritella sp. PE36]
          Length = 311

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 7/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  +A SGS T AAE L +S S +S+Q+  LE ++G++L  R  R  TLTE+G + 
Sbjct: 11  QIVFFNALATSGSLTKAAEMLKVSVSHVSKQLHSLEEDLGVQLINRSTRTRTLTEEGKRY 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              ++++   ++     + ++  + SG +R+A +       +   L +    YP + I +
Sbjct: 71  AEYSAQIVSLIQEADTLVTDTRDEISGHIRLALSRSFATLHIIPALDKLQKKYPQLTIDV 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  +   + I S   + +++        AAP YL+    P    EL
Sbjct: 131 SLFDHKVDMLAEDIDLWVTTYEDI-SEGYVAQRIADTRFLLLAAPEYLQAHGTPQHPDEL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            ++N +T+      C       A  D           +VN   ++    + G GI  L  
Sbjct: 190 TQYNCVTYHSKSRSCNHWS--FARGDEEFSISVSGNYRVNLAEAVRDALIAGKGIGYLAS 247

Query: 247 YIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y++ D      LV+++ D         Y  YP       +++   NF+
Sbjct: 248 YLLTDELETGKLVQLLPDWRANQKMPAYAVYPRNKHLPARVRTTINFL 295


>gi|157368773|ref|YP_001476762.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320537|gb|ABV39634.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 302

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 69/302 (22%), Positives = 129/302 (42%), Gaps = 11/302 (3%)

Query: 1   MSFDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D    L  F   A++ +F+ AA QL ++ ++IS+ I  LE ++ ++LF R+   +
Sbjct: 1   MSLPFDVHRLLPAFLAAAQAQNFSAAARQLGVTPAAISKNIRVLEEKLALRLFQRNTHNV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT++G  L +  + ++  L  T      +   PSG +R++     G+ +L   + +FL 
Sbjct: 61  VLTDEGKALLQQVAPLWQALSATLETAGSAQQAPSGTVRVSMIPGFGRQMLMPLIPQFLE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I + L LD + +++  +  D  I   +    S L+ R L  + M   A+P YL   
Sbjct: 121 RYPQIDLDLSLDARVVNLVGEGFDVGIG-SRVDPDSRLVARSLYPMQMVLAASPGYLAQH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             P   Q+L +HN +   +  P       W L              L  +    ++   +
Sbjct: 180 GIPQDPQDLLQHNCLLHRN--PATGRSVKWPLQQQGEAKALELQGRLVASRPEMLLDAAL 237

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI  L  +  + +     L  ++ D       ++  Y  A     +++ +  F+   
Sbjct: 238 AGLGIVCLARWYAEHHFAQGTLQPVLADCWPRPTQLWLYYASAD-LPPRVRVWVEFLLEH 296

Query: 294 AR 295
            R
Sbjct: 297 FR 298


>gi|86358951|ref|YP_470843.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86283053|gb|ABC92116.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 302

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 130/294 (44%), Gaps = 10/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +RVF  V    SFT AAE   L +S+++  +  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFDAMRVFCRVLERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +E  +     +  +P G LR+     L ++ +  +L  FL  YP+
Sbjct: 61  DGEAYYQRCLSILADIENAEAAFAGA--RPKGLLRVDVHGTLARHFVLPSLPSFLEAYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+  +   ++ +D+  +  DC +R+  P+  S +I R++  +     A+P Y+     P 
Sbjct: 119 IEFYMSEGDRLVDLVHEGIDCVLRVGTPV-DSDMIIRRVAMLDEITLASPAYVAARGLPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
               L  H ++ F                VD  +    I + + VN+  S +    +G G
Sbjct: 178 HPDRLAGHRMVGFRS--SSTGGPLPLEFMVDGTLRNITIPATVTVNAAESYVAAARMGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +  +P Y  +    +  L++++ D       V   YP   + + +++ F +++ 
Sbjct: 236 LIQIPRYHAEKDLSDGTLIQVLPDFPLTQTPVSLLYPRNRQLSPRVRVFVDWLV 289


>gi|83748239|ref|ZP_00945265.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207743507|ref|YP_002259899.1| hypothetical protein RSIPO_01686 [Ralstonia solanacearum IPO1609]
 gi|83725080|gb|EAP72232.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206594905|emb|CAQ61832.1| hypothetical protein RSIPO_01686 [Ralstonia solanacearum IPO1609]
          Length = 297

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 140/294 (47%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  +  +     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGAAFLAHARGILAAVDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ ID+  +  D AIR+   ++ S+L  R+L T  +   A+P YLK    P
Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRIG-TLRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I++L  H L+ F  + P+ +  +         +    +  L+ +S  ++ Q  + G+G
Sbjct: 180 RTIEDLRHHVLLGF--VQPESLNHWPLRGPHGDRLRI--VPTLKASSGETLRQLALQGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
           +  L D++   +    +LV+++ D        ++  Y    +   ++  F +F+
Sbjct: 236 LVCLADFMTAADRRAGHLVQVLPDATVEILQPIHAVYYRNTQLASRITCFLDFL 289


>gi|323528951|ref|YP_004231103.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385953|gb|ADX58043.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 306

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 127/294 (43%), Gaps = 7/294 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +    VA +G F+ AA++L ++ SS++R +  LE  +G  L  R  R ++LT+ G     
Sbjct: 8   KTLLEVADAGGFSKAAQRLGVATSSVTRLMDSLEASLGAALLTRTPRKVSLTDAGLAYVE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             S+V   L      + +S   P G LR++      +  L  +L  FL  +P + + + +
Sbjct: 68  QVSKVIDDLAEADESVFDSGAAPVGSLRVSVPSTYSRLCLAPHLAAFLAEHPRVVLDVAV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+++D  D AIR+    + ++L+ +KL     +  A+  YL+    P +  +L  
Sbjct: 128 GDQFVDLAVDRIDVAIRIGFAERDANLVVKKLADNPRYVVASHDYLQRSGTPRTPADLAG 187

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  + F                            L  N+   + +  V G GIALLP + 
Sbjct: 188 HECVRFAYGGGYRARQIWTFERDGVEERVDVRGHLLSNNLDILFEAAVAGRGIALLPAWQ 247

Query: 249 VKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V        L+R+ E       +    VY  Y    + + K++AF  F+  + R
Sbjct: 248 VAAEIHAGRLMRLFESFDARPHSGDAVVYAAYLPNRRQSSKVRAFVQFLESRLR 301


>gi|300896273|ref|ZP_07114817.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300359814|gb|EFJ75684.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
          Length = 308

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 145/302 (48%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 2   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 61

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 62  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 122 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAIPVSPLIKLVTVASPDYLKE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +  +A  +             N   S+++ 
Sbjct: 181 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEFEIEVSGKYISNDDESMIRM 240

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 241 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 300

Query: 292 LK 293
            K
Sbjct: 301 EK 302


>gi|206562206|ref|YP_002232969.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038246|emb|CAR54200.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 305

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 137/295 (46%), Gaps = 6/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + VF     + SF  AAE+LH+++S++ + I+ LE  +G+ LF+R  R  +LT
Sbjct: 1   MRNNLKGIDVFVAAVEASSFAQAAEKLHITRSAVGKSIARLEERLGVVLFHRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++GS  +        +++  +  L+    +  G+LR++     G   +   L      +P
Sbjct: 61  DEGSLFYEHCLRAMDEIQAGEALLETGKWQMKGRLRVSMPTLFGHLCVAPILIGVAKAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L   ++ +D++ +  D A+R+     SS L+ R L    M   A+P YL    EP
Sbjct: 121 DLDLELSFSDRSVDLAEERFDLAVRIGTLPNSSGLVARALAEHRMAFCASPAYLSRYGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + +EL++H  + +       +  +  L   +R   +P +  L  +   ++M   +   G
Sbjct: 181 QTWRELEQHKALAYTRF--GQVHRWPVLVDGERVELQPAVRLL-SDDLRALMDAALADLG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +A LP ++V+D      L  ++       + ++  +P       K++A  + +  
Sbjct: 238 VAWLPYWLVRDALRGGALRELLPAQPGVVYPIHAVWPATPHLPLKVRAAVDALRE 292


>gi|258622217|ref|ZP_05717243.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|262164683|ref|ZP_06032421.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|258585541|gb|EEW10264.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|262027063|gb|EEY45730.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 311

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 129/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE
Sbjct: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP+
Sbjct: 61  SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  SSLI RKL        A+P YL     P 
Sbjct: 121 VVPYLYLNDNISNLAESGLDVVIRYGE-LADSSLISRKLAASRRVLCASPAYLARKGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W    +       +      +    I Q+ + G G
Sbjct: 180 TPQDLAQHDCLA---MVRSNEEMKTWYFQDNEQHKVITVVPKSFADDGEVIRQWALAGMG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+++     LV ++   +             +   Y        +L+ F +F
Sbjct: 237 IALKSILDVQEDLNQKRLVTVLNGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LIEQ 300


>gi|170700497|ref|ZP_02891501.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134578|gb|EDT02902.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 319

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 127/294 (43%), Gaps = 11/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G    
Sbjct: 11  LHVFMSVATAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQHYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T   Y ++   +  L+E   +P G LR+         ++   L  F   YP +++++ 
Sbjct: 71  QQTEPAYRQVMQARDALKEVRSEPGGLLRVTALPLARSLVITPILAAFRARYPKVRLEIR 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +N+ +DI+ D  D  IRL   +Q   +  R    +     A+P YL     P SI EL+
Sbjct: 131 YENELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPGYLARHGMPASIAELE 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL--- 244
           +H  I F       +  +  L    R +          N   +++     G GIA     
Sbjct: 191 RHACIRFRFSESGRLHKW-LLHDGRRDVDLDPEGVYVTNDADAVIDAAREGVGIAFAFMR 249

Query: 245 ----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               PD     +  LV ++         ++  Y        KL+AF + +  +A
Sbjct: 250 ERVEPDL---RDGTLVEVLPGACRTLPPMWLYYVNRKHVPAKLRAFIDVLRERA 300


>gi|71280634|ref|YP_269388.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71146374|gb|AAZ26847.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 294

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 127/292 (43%), Gaps = 12/292 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  +A  GSFT  AEQ++ S+S IS++IS LE ++G +L +R  R + LT 
Sbjct: 1   MDKLRAIQLFVRLADLGSFTRVAEQVNSSKSMISKEISRLEADLGTRLLHRSTRSVQLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   E+  KL+     +Q+      GKL+I   + LG   L     +F+   P+
Sbjct: 61  VGEGYLQRAREILSKLDDADNFVQDLQQNLRGKLKINAPMALGITDLSHLFADFMKANPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L ++ +D+     D   R       S+ + R L         +P YLK      
Sbjct: 121 IELDIHLGDESVDLVEQGFDLGFRASSQPIDSNYVGRPLTRFTYKVCVSPDYLKMHSTIT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +HN   +     K +             G      L+VN+ + +M+    G GI
Sbjct: 181 HPRDLKEHNCFIYSYFQGKNVWPI--------EGGIEVKGSLRVNNTMFMMESIKQGLGI 232

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +PD++ +    +  +V ++ D      T+Y  YP       KL     ++
Sbjct: 233 GFIPDFVCQQAINSGQVVEVLADSKKSMLTLYALYPVRNFVPPKLVQCIEYL 284


>gi|331661667|ref|ZP_08362590.1| transcriptional regulator, LysR family [Escherichia coli TA143]
 gi|331060089|gb|EGI32053.1| transcriptional regulator, LysR family [Escherichia coli TA143]
          Length = 308

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 145/302 (48%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 2   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 61

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 62  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 122 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +  +A  +             N   S+++ 
Sbjct: 181 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEFEIEVSGKYISNDDESMIRM 240

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 241 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 300

Query: 292 LK 293
            K
Sbjct: 301 EK 302


>gi|16766218|ref|NP_461833.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16421461|gb|AAL21792.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|261248048|emb|CBG25882.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995042|gb|ACY89927.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159471|emb|CBW18990.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323131264|gb|ADX18694.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989783|gb|AEF08766.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 310

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 9   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 69  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDL 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 129 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARNPVS-S 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 187 LESLAQAEWIIHERLPTPLRWTVTSNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 246

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 247 LLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 300


>gi|53717048|ref|YP_105843.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53722036|ref|YP_111021.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|67640318|ref|ZP_00439129.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121598077|ref|YP_989772.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124381144|ref|YP_001024257.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126443084|ref|YP_001062485.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126446301|ref|YP_001078330.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126458078|ref|YP_001075438.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134283396|ref|ZP_01770096.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167003522|ref|ZP_02269308.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167723479|ref|ZP_02406715.1| transcriptional regulator [Burkholderia pseudomallei DM98]
 gi|167742438|ref|ZP_02415212.1| transcriptional regulator [Burkholderia pseudomallei 14]
 gi|167819603|ref|ZP_02451283.1| transcriptional regulator [Burkholderia pseudomallei 91]
 gi|167827986|ref|ZP_02459457.1| transcriptional regulator [Burkholderia pseudomallei 9]
 gi|167849444|ref|ZP_02474952.1| transcriptional regulator [Burkholderia pseudomallei B7210]
 gi|167898048|ref|ZP_02485450.1| transcriptional regulator [Burkholderia pseudomallei 7894]
 gi|167906381|ref|ZP_02493586.1| transcriptional regulator [Burkholderia pseudomallei NCTC 13177]
 gi|167914712|ref|ZP_02501803.1| transcriptional regulator [Burkholderia pseudomallei 112]
 gi|167922606|ref|ZP_02509697.1| transcriptional regulator [Burkholderia pseudomallei BCC215]
 gi|217418780|ref|ZP_03450287.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226195288|ref|ZP_03790878.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237509871|ref|ZP_04522586.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242313297|ref|ZP_04812314.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254174479|ref|ZP_04881141.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254183501|ref|ZP_04890093.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254190127|ref|ZP_04896636.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254192882|ref|ZP_04899317.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254200655|ref|ZP_04907020.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254264366|ref|ZP_04955231.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254300398|ref|ZP_04967844.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52212450|emb|CAH38476.1| putative LysR family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|52423018|gb|AAU46588.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|121225875|gb|ABM49406.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124289164|gb|ABM98433.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126222575|gb|ABN86080.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126231846|gb|ABN95259.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126239155|gb|ABO02267.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134245145|gb|EBA45239.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147748267|gb|EDK55342.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|157810215|gb|EDO87385.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157937804|gb|EDO93474.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160695525|gb|EDP85495.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169649636|gb|EDS82329.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184214034|gb|EDU11077.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217398084|gb|EEC38099.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225932661|gb|EEH28658.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002076|gb|EEP51500.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238521015|gb|EEP84470.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242136536|gb|EES22939.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243060963|gb|EES43149.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254215368|gb|EET04753.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 323

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    P
Sbjct: 60  ESGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L KH  +          E        D  +     +  Q N   ++      G G
Sbjct: 180 TTPDDLAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F + +
Sbjct: 240 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHL 292


>gi|325523061|gb|EGD01473.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 304

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 131/291 (45%), Gaps = 5/291 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +A   SFT AA ++ +S++++S+ +  LE ++ +KL YR  R ++LTE G +L+
Sbjct: 9   LAWFVHIAHHLSFTKAAAEMGVSRAALSQNLKALERQLNVKLLYRTTRDMSLTEDGQRLY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  +E     L E   +PSG LRI T+    + LL+ +L EF+  YP ++++L+
Sbjct: 69  DTLRPAFGSIEAALRNLHEVRHEPSGLLRINTSRVAARTLLEPHLGEFMARYPLLRVELV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+   +I  D  D  IRL + +    +       + M     P Y      P +  +L 
Sbjct: 129 MDDGLSNIIADGYDAGIRLGESLAEHMVAVPITPMLEMVVAGTPDYFARHGTPATPADLI 188

Query: 188 KHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            HN + +       +  + + ++              +  N    +++  + G G+    
Sbjct: 189 GHNCLCYRHTTSGAIYRWEFTSSEVEGHAFEVEPQGSVVTNDDDGMIRAALQGIGLIQHQ 248

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           D  ++++     LVR++     P    Y   P   +   K++A  +F+  K
Sbjct: 249 DIALREHLDAGTLVRVLAPWCKPFPGYYLYTPSREQMPAKVRALMDFLVEK 299


>gi|320181668|gb|EFW56583.1| Putative LysR-like transcriptional regulator [Shigella boydii ATCC
           9905]
          Length = 307

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 145/302 (48%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 1   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 61  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 121 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 179

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +  +A  +             N   S+++ 
Sbjct: 180 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEFEIEVSGKYISNDDESMIRM 239

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 240 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 299

Query: 292 LK 293
            K
Sbjct: 300 EK 301


>gi|331645474|ref|ZP_08346578.1| transcriptional regulator, LysR family [Escherichia coli M605]
 gi|330910099|gb|EGH38609.1| putative LysR-like transcriptional regulator [Escherichia coli
           AA86]
 gi|331045636|gb|EGI17762.1| transcriptional regulator, LysR family [Escherichia coli M605]
          Length = 329

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 142/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 23  MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 82

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G  L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 83  SLTEEGQHLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 142

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 143 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAIPVSPLIKLVTVASPDYLKE 201

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 202 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVVGGNEEFEIEVSGKYISNDDESMIRM 261

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 262 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 321

Query: 292 LK 293
            K
Sbjct: 322 EK 323


>gi|226953991|ref|ZP_03824455.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226835242|gb|EEH67625.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 328

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 126/289 (43%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G+KL  R  R   LT+ G+
Sbjct: 20  LHAMHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGVKLLQRSTRQHALTDIGA 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V   +E  + E   ++ KP G+LRI +    G   +   + EF   YPD+ +
Sbjct: 80  TYAERCRQVLSIIEEAEAEATGTAAKPKGRLRIQSMASFGHYYVAPVMAEFCQTYPDLTV 139

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +        D+     D ++ L + +  S  + R++ +I     A+P YL+    P S  
Sbjct: 140 EYRTSQNAPDLLAKGIDVSLYLTESLTDSRFVARRIGSIFSVLCASPAYLQKHGIPQSPD 199

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  +    + P     ++ +              L  ++   ++       GIALL
Sbjct: 200 ELHDHACLRL--VNPSITPQWHLVGENSCSYQIDISGQLIADTPELLLDMVQQDMGIALL 257

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P + V D     +L  I+ D  +P   VY   P       K +A+ N++
Sbjct: 258 PMFAVIDAVRAGHLCHILPDWRSPDIGVYTLLPSRHFIDAKTRAWLNWV 306


>gi|298682287|gb|ADI95349.1| LysR family transcriptional regulator [Pseudomonas putida]
          Length = 301

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 140/297 (47%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      L  F   A + SFT A  +L +S S+I + ++ LE  +G++LF+R  R +TLT
Sbjct: 4   MMDQLGALGAFVHAAEARSFTEAGRRLEVSSSAIGKAVARLEERLGVRLFHRSTRAITLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+        ++ +LE  + EL +++ KP GKLR++         L  +L  F   YP
Sbjct: 64  PEGALFLERCHRIFAELEVAERELHQAAAKPQGKLRLSLPQ--LGMRLMPHLIAFQQTYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++   ++ +++  +  D  +R+ + ++ S L+ R+L        A P YL+    P
Sbjct: 122 AVELEMDFSDRLVNVIEEGFDAVMRIGE-VEDSRLMMRRLQGFSHRIVATPEYLEQRGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + +       ++ +  L    +P+          N+   +M     G G
Sbjct: 181 KHPYDLASHACLHYRYPSSGKLDAWP-LTEDGKPVHLDLPQSAVANAIDPLMAMAEAGQG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LPD+I+ D      L+ ++E  ++   +    +P + +   K+KAF +F+  + 
Sbjct: 240 IACLPDFILVDALAGGRLISLLEAYVSDRRSFTILWPSSRQPLPKIKAFVDFMVARL 296


>gi|301026539|ref|ZP_07189967.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|300395470|gb|EFJ79008.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
          Length = 307

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLVIKERDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLVQLLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|299770757|ref|YP_003732783.1| putative HTH-type transcriptional regulator YcjZ [Acinetobacter sp.
           DR1]
 gi|298700845|gb|ADI91410.1| putative HTH-type transcriptional regulator YcjZ [Acinetobacter sp.
           DR1]
          Length = 295

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L+ F  V ++ +FT AA  + ++QS++S+ I+ LE ++GIKL  R  R LTLT
Sbjct: 1   MKINLNDLKTFSEVVKTKNFTKAAAYMGVTQSAVSQSINNLEAQLGIKLLNRSTRSLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS+L  +  +    ++    ++      PSG +RI+      +  L   LK+ +  YP
Sbjct: 61  EAGSRLIELVGQNIENIDLGIEQISSMKDLPSGHVRISADAFTIKYYLWPKLKKLVKQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCRE 179
           DI ++L  +N+ IDI+ +  D  +R+   ++   LI   +   I     A+P YL+    
Sbjct: 121 DISLELTSENRRIDIAKEGYDAGVRVGNLVEKD-LIAVPISKEIPFRLIASPEYLEKYGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P SI +L KH  I    L    +  +      ++ +       L + S   ++   + G 
Sbjct: 180 PQSIDDLKKHKGIYIRLLTDNSLMAWE-FKDKNKSVFFRGPVQLVMTSLDEMLDAVLDGC 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +A LP ++VK   +   LV ++E         Y  Y      +   K  ++
Sbjct: 239 AVAYLPYFLVKPALEEKKLVSLLEQHAVTLPPFYLFYTSRRLMSPAFKIVKD 290


>gi|226941083|ref|YP_002796157.1| Transcriptional regulator [Laribacter hongkongensis HLHK9]
 gi|226716010|gb|ACO75148.1| Transcriptional regulator [Laribacter hongkongensis HLHK9]
          Length = 303

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 119/282 (42%), Gaps = 4/282 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR GSFT AA  L ++QS++S+ ISGLE  +GI+L  R  R ++ T  G
Sbjct: 5   NLNDLLYFVTVAREGSFTRAASLLGITQSALSQAISGLEARLGIRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++E    EL     KP+G +RI     +  ++L   L   L  YPDI 
Sbjct: 65  ERLLDTVGYRLDEIEAGLDELTGMRDKPAGTVRITCGEHVLHSILLPRLAPLLREYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+  ++    DI  D  D  +RL   I    +       + M   A+P Y      P + 
Sbjct: 125 IEFDVNYGFRDIVADRFDAGVRLGDSIDKDMIALPISPPLRMAVVASPAYFMEHPMPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN I         +  ++      + +       L  N+   I+   V G GIA 
Sbjct: 185 SDLLGHNCINMRMQTAGGLYTWD-FGHQGQTLSVRVDGQLVFNTSPGIVDAAVAGLGIAN 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           LP+       +   LVR++ED        Y  YP   + +  
Sbjct: 244 LPEEEFAPHVEAGRLVRVLEDWCPAFSGYYLYYPSRRQLSPA 285


>gi|163748651|ref|ZP_02155904.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161331761|gb|EDQ02565.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 314

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 85/294 (28%), Positives = 141/294 (47%), Gaps = 9/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L L+++++SR+I+ LE + G++L +R  R L LTE 
Sbjct: 1   MDLNRVQMFDQVVEQGSFTAAAKALGLTKATVSRKIAELEADAGVQLLFRTTRKLKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +     +   L+  +++L  S     GKLRI   I+LGQ  L      FL  YPDI
Sbjct: 61  GSAYYNRVHRILADLKQAEVQLSASQEVIKGKLRIVCPIELGQLFLGKVFARFLGRYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++      + L    L+       A+P YL     P +
Sbjct: 121 SIEAELSNRKVDMIAEDVDILFQITS-TTDTRLQSYDLLNTTKTLMASPEYLTRYGTPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            Q+L++H  I     +     D +W L   D+ +     + L VN+     +  + G GI
Sbjct: 180 PQDLNQHKAI----KLKSAHIDASWTLFDGDKWVTLDPEAQLTVNNATLAREAAIEGLGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A +P+ I +   DN  L+ ++ED       V   +P+      K + F  FI+ 
Sbjct: 236 ATVPNIIAQQALDNKQLIPLLEDFPMTQTKVIMSFPQRAYLPKKYRVFIEFIYE 289


>gi|308095353|ref|ZP_05905259.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308087299|gb|EFO36994.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
          Length = 304

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 142/299 (47%), Gaps = 8/299 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            +L  F    R+ SF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G  
Sbjct: 9   RRLHHFLPFGRTSSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAGQS 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  VY  + T +  +       SG ++I      G+ +L G + EF   YPDI I 
Sbjct: 69  FFVHAKAVYKAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDINID 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P    E
Sbjct: 129 MELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQPIE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KHN + +        E        D+         L  N+  ++    +LG G+  +P
Sbjct: 188 LTKHNCLVYSYQETGAREWA--FKAGDKMYQVTVDGNLCTNNSSALRNVALLGQGVIYVP 245

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKARDWKF 299
             +V ++    +L+++ ++       +Y  YP   +   K+K F + ++   ++++ +F
Sbjct: 246 RVLVYEDLKQGSLIQLFKEETAKCLGIYAVYPYTRQQPEKIKIFIDHLYNSFQSQNHRF 304


>gi|260469868|ref|ZP_05814013.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259028358|gb|EEW29689.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 296

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L V   VA+ GSF  AA++L ++ S++S  +S LE  +G++L  R  R +  TE+G
Sbjct: 5   NLSQLAVLATVAQCGSFRGAAKELAIAPSAVSHAVSSLEARLGVRLLSRSTRSVAPTEEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L         +++       E+  +P+G LR++        +L   L  F   YPDI 
Sbjct: 65  ARLLERLRPALSEIDLALETAVEARDRPAGNLRLSVPRTAAHLVLTPRLGAFAAAYPDIV 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++++++  D+     D  +RL + +Q   +  R    I      AP Y +    P   
Sbjct: 125 LEIVVEDRFTDVVEGGFDAGVRLGESLQRDMIAVRIGPDIRGAVVGAPSYFEAMPIPRHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I F          + W     R   E  +   L ++    I Q  V G+G+A
Sbjct: 185 RDLADHRCIRFRF---SSGILYRWEFEKGREAIEMAVEGPLILDEDHLIAQAAVDGAGLA 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            + +  V+    +  L+R++ED        +  YP   +    L+AF +F
Sbjct: 242 FVFEPYVRAPLADGRLIRVLEDWCPSFDGFFVYYPSRRQMRPALRAFVDF 291


>gi|194367162|ref|YP_002029772.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349966|gb|ACF53089.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 301

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 131/289 (45%), Gaps = 9/289 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + L  F   ARSGSFT AA+ L +S+S++ + I+ LE  +G++LF+R  R + LT  G
Sbjct: 6   SLNGLVTFVTTARSGSFTEAADALGISRSAVGKAIARLEARLGVRLFHRTTRRIALTTDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   +    ++   +     S+  PSG+LRI      G+ ++   L      YPD+Q
Sbjct: 66  EAYYASCAAALEEISAAEA-CLGSAGLPSGRLRIDMPSSFGRLVVLPVLLRLCRQYPDLQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   +  +D   +  D  IR      +  L+ R+L    +    +P YL+    P ++
Sbjct: 125 LTMTFTDHFVDPVEEGIDLLIRFGGLHHAEHLVARRLGRQRLVTCTSPAYLQAHGVPRTV 184

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +EL +H  ++ F    P        + + +        +  Q+N   ++++  + G GI 
Sbjct: 185 EELAQHRSIVGFRHGQPVWWR----IGSEEDEGTFIPSAPYQLNDGDAVIEAAIAGLGIC 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P  +V+   ++  L  ++++ +     ++  +P       K++   +
Sbjct: 241 QMPVSLVRRHLESGALQSVLDEHMQRHIDIHALWPPTRHLRPKVRYVVD 289


>gi|16130956|ref|NP_417532.1| transcriptional activator of ttdABT [Escherichia coli str. K-12
           substr. MG1655]
 gi|89109830|ref|AP_003610.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|157156353|ref|YP_001464520.1| transcriptional activator TtdR [Escherichia coli E24377A]
 gi|170018688|ref|YP_001723642.1| transcriptional activator TtdR [Escherichia coli ATCC 8739]
 gi|170082603|ref|YP_001731923.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|188493021|ref|ZP_03000291.1| transcriptional regulator, trunscation [Escherichia coli 53638]
 gi|193061941|ref|ZP_03043037.1| HTH-type transcriptional activator TtdR [Escherichia coli E22]
 gi|193067398|ref|ZP_03048366.1| HTH-type transcriptional activator TtdR [Escherichia coli E110019]
 gi|194426156|ref|ZP_03058711.1| HTH-type transcriptional activator TtdR [Escherichia coli B171]
 gi|194436795|ref|ZP_03068895.1| HTH-type transcriptional activator TtdR [Escherichia coli 101-1]
 gi|209920531|ref|YP_002294615.1| transcriptional activator TtdR [Escherichia coli SE11]
 gi|218555630|ref|YP_002388543.1| transcriptional activator TtdR [Escherichia coli IAI1]
 gi|218696765|ref|YP_002404432.1| transcriptional activator TtdR [Escherichia coli 55989]
 gi|238902171|ref|YP_002927967.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|253772104|ref|YP_003034935.1| transcriptional activator TtdR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163007|ref|YP_003046115.1| transcriptional activator TtdR [Escherichia coli B str. REL606]
 gi|256019024|ref|ZP_05432889.1| transcriptional activator TtdR [Shigella sp. D9]
 gi|256024360|ref|ZP_05438225.1| transcriptional activator TtdR [Escherichia sp. 4_1_40B]
 gi|260845814|ref|YP_003223592.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O103:H2 str. 12009]
 gi|260857190|ref|YP_003231081.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O26:H11 str. 11368]
 gi|297521598|ref|ZP_06939984.1| transcriptional activator TtdR [Escherichia coli OP50]
 gi|300821653|ref|ZP_07101799.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300917402|ref|ZP_07134068.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300923721|ref|ZP_07139746.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300931945|ref|ZP_07147242.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300950731|ref|ZP_07164619.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300958446|ref|ZP_07170585.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|301021235|ref|ZP_07185267.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|301325588|ref|ZP_07219056.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|301644755|ref|ZP_07244730.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|307139748|ref|ZP_07499104.1| transcriptional activator TtdR [Escherichia coli H736]
 gi|307310315|ref|ZP_07589963.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|309793624|ref|ZP_07688050.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|331643758|ref|ZP_08344889.1| HTH-type transcriptional activator TtdR [Escherichia coli H736]
 gi|331679136|ref|ZP_08379808.1| HTH-type transcriptional activator TtdR [Escherichia coli H591]
 gi|332280124|ref|ZP_08392537.1| transcriptional activator TtdR [Shigella sp. D9]
 gi|1723886|sp|P45463|TTDR_ECOLI RecName: Full=HTH-type transcriptional activator ttdR
 gi|1203799|gb|AAA89140.1| alternate name ygiP; ORF_310 [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789440|gb|AAC76096.1| transcriptional activator of ttdABT [Escherichia coli str. K-12
           substr. MG1655]
 gi|85675861|dbj|BAE77111.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|157078383|gb|ABV18091.1| transcriptional regulator, LysR family [Escherichia coli E24377A]
 gi|169753616|gb|ACA76315.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|169890438|gb|ACB04145.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188488220|gb|EDU63323.1| transcriptional regulator, trunscation [Escherichia coli 53638]
 gi|192932161|gb|EDV84759.1| HTH-type transcriptional activator TtdR [Escherichia coli E22]
 gi|192959355|gb|EDV89790.1| HTH-type transcriptional activator TtdR [Escherichia coli E110019]
 gi|194415464|gb|EDX31731.1| HTH-type transcriptional activator TtdR [Escherichia coli B171]
 gi|194424277|gb|EDX40264.1| HTH-type transcriptional activator TtdR [Escherichia coli 101-1]
 gi|209913790|dbj|BAG78864.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|218353497|emb|CAU99612.1| putative DNA-binding transcriptional regulator [Escherichia coli
           55989]
 gi|218362398|emb|CAR00022.1| putative DNA-binding transcriptional regulator [Escherichia coli
           IAI1]
 gi|238862289|gb|ACR64287.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|242378610|emb|CAQ33397.1| Dan [Escherichia coli BL21(DE3)]
 gi|253323148|gb|ACT27750.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974908|gb|ACT40579.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253979064|gb|ACT44734.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|257755839|dbj|BAI27341.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O26:H11 str. 11368]
 gi|257760961|dbj|BAI32458.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O103:H2 str. 12009]
 gi|260447904|gb|ACX38326.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|299881593|gb|EFI89804.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|300314887|gb|EFJ64671.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300415359|gb|EFJ98669.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300419991|gb|EFK03302.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300449968|gb|EFK13588.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300460368|gb|EFK23861.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300525791|gb|EFK46860.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300847639|gb|EFK75399.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|301076909|gb|EFK91715.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|306909210|gb|EFN39705.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|308122581|gb|EFO59843.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|315062368|gb|ADT76695.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|315137654|dbj|BAJ44813.1| transcriptional activator TtdR [Escherichia coli DH1]
 gi|315617132|gb|EFU97741.1| HTH-type transcriptional activator ttdR [Escherichia coli 3431]
 gi|323154515|gb|EFZ40715.1| HTH-type transcriptional activator ttdR [Escherichia coli EPECa14]
 gi|323163110|gb|EFZ48943.1| HTH-type transcriptional activator ttdR [Escherichia coli E128010]
 gi|323168096|gb|EFZ53783.1| HTH-type transcriptional activator ttdR [Shigella sonnei 53G]
 gi|323173695|gb|EFZ59324.1| HTH-type transcriptional activator ttdR [Escherichia coli LT-68]
 gi|323183643|gb|EFZ69040.1| HTH-type transcriptional activator ttdR [Escherichia coli 1357]
 gi|323377044|gb|ADX49312.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323935938|gb|EGB32233.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1520]
 gi|323941842|gb|EGB38021.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|323946870|gb|EGB42888.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|323971817|gb|EGB67042.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
 gi|324018224|gb|EGB87443.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
 gi|324119668|gb|EGC13549.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
 gi|331037229|gb|EGI09453.1| HTH-type transcriptional activator TtdR [Escherichia coli H736]
 gi|331073201|gb|EGI44524.1| HTH-type transcriptional activator TtdR [Escherichia coli H591]
 gi|332102476|gb|EGJ05822.1| transcriptional activator TtdR [Shigella sp. D9]
 gi|332345014|gb|AEE58348.1| HTH-type transcriptional activator TtdR [Escherichia coli UMNK88]
          Length = 310

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|296102954|ref|YP_003613100.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057413|gb|ADF62151.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 301

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 124/294 (42%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L L +S +SR+I+ LE  +G++L  R  R  T+TE G
Sbjct: 3   DLNDFVWFVKVVDYGGFAAAGRALDLPKSRLSRRIAQLEERLGVRLIQRTTRQFTVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +  + E  +  +     +P G +R+   + L    +   L  F++ YP I 
Sbjct: 63  QTFYQHCKAMMVEAEAAEEAVAALQAEPRGIVRLTCPVTLLHVHVGPMLARFMVRYPGIN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R +P   S L+ R L        A P  ++   +P  
Sbjct: 123 LQLEATNRRVDLVGEGVDVAIRVRPRPFDDSDLVLRVLADRGHCLVAGPALIERLGKPSM 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     ++ G+   K +  +                 L     L++ +  + G G+ 
Sbjct: 183 PSELSAWPGLSMGE--GKHIHKWQLCGPEGAKAEIHFTPRLITTDMLALREAAMAGIGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +VKD   +  L+R++E        ++  YP        ++A  +F+  +
Sbjct: 241 QLPILMVKDQLASGELIRVLEAWEPKREVIHAVYPSRRGLLPSVRALVDFLTEE 294


>gi|307730228|ref|YP_003907452.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584763|gb|ADN58161.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 298

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 131/293 (44%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++++RVF  VA   SFT A++ L + +++++  +  +E  +G +L  R  R + LT 
Sbjct: 1   MDRFEEMRVFVRVAERQSFTRASDDLQIPRATVTNLVKRMEERLGARLLERTTRTVRLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +         P G LR+     L ++ +   L  FL  YP 
Sbjct: 61  DGQAYYGRCVRLIADLEEAEGSFSNL--APKGLLRVNLQGTLARHFIVPALPAFLARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL+   EP 
Sbjct: 119 IELTIGEDDRLVDLVREGIDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPEYLQKYGEPA 177

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             Q L  H  + +      + +     +   + P+  P    + V          V G G
Sbjct: 178 DPQALSAHRAVNYVSSATGRPLPLEFSIEGRNTPMLLP--GAVSVTGVELYTGSAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +P Y V+D   +  L  I+ D   PS  V   YP+  + + +++ F  ++
Sbjct: 236 IVQVPRYRVRDELADGRLKIILADFPPPSLPVSVLYPQNRQLSSRVRVFSQWL 288


>gi|332087235|gb|EGI92368.1| HTH-type transcriptional activator aaeR [Shigella boydii 5216-82]
          Length = 309

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNPPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++++++   G+GIA +
Sbjct: 183 DLSSHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P  +++ +     L  ++    +    VY  Y E  K   K++   N
Sbjct: 240 PLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 286


>gi|187924123|ref|YP_001895765.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715317|gb|ACD16541.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 298

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 128/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  VA +GSF  AAEQL +S S ++R +S LE  +GI+LF R  R + LTE G+
Sbjct: 5   FQAMQAFVKVADAGSFAQAAEQLGVSTSVVTRHVSSLEKHLGIRLFQRTTRKVVLTEAGA 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  +LE  +     +S + +G LRI          L     E+   +P + +
Sbjct: 65  EYGDGCRLLMAELEEVESRATTASKEVAGDLRIVALGSFSLFRLTPLFAEYQAKFPRVNL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L  K +D+     D  I     I+S SL+ R+L+  H    A+  YL     P +  
Sbjct: 125 RVTLTEKRVDLLEGGFDVGIVTEHMIRSESLVVRRLINSHAVPVASAAYLAQAGHPKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H +IT    +    + + +             +   VNS +   Q  +   GIALL
Sbjct: 185 DLARHRVITAP--LDTSPQTWVFDNGDGGEDSIALDASFTVNSMIMQKQAALGAMGIALL 242

Query: 245 PDYIVKDN---PNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
           P  +V D      L+RI+ED         V   YP       K++ F +
Sbjct: 243 PLEMVDDELRAGTLMRILEDHAVLNGDVAVSLVYPSREFVPRKIREFID 291


>gi|161615833|ref|YP_001589798.1| hypothetical protein SPAB_03624 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161365197|gb|ABX68965.1| hypothetical protein SPAB_03624 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 303

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRATLISRFTILPVAAPQWLARNPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    +   L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALEEGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|91226720|ref|ZP_01261409.1| putative LysR-family transcriptional regulatory protein [Vibrio
           alginolyticus 12G01]
 gi|91189017|gb|EAS75300.1| putative LysR-family transcriptional regulatory protein [Vibrio
           alginolyticus 12G01]
          Length = 295

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 122/284 (42%), Gaps = 11/284 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  V  SGSFT  AE+L +S+  ++R +  +E  +  +L +R  R ++LT  G +   
Sbjct: 8   KVFVDVVYSGSFTATAERLDMSRPMVTRYVEAMENWLQTRLLHRTTRKVSLTTAGERSLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  + + T      +  + SGK+R+A++   G + L   +  F+  +P + I + L
Sbjct: 68  QIERWLKQAD-TLTSNIAADGELSGKIRLASSTSFGFSQLIPVVNSFMQKHPKVHIDIDL 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +   D++    D AIR+       SLI + +        A+P YL+        ++L  
Sbjct: 127 QDSVSDLTEQRIDLAIRIASD-PDPSLIGKPIAVCESVLVASPQYLQTHHAIAHPRDLSS 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H+ + +     K  E   W  +         I C L  N   +++   + G GI++LP Y
Sbjct: 186 HDCLGY-----KNFERHVWHLSQGDQFESVGIECRLTSNEATALLHGALQGMGISMLPTY 240

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +      +  L  ++ D       +Y  Y      +  ++AF +
Sbjct: 241 LSNIYLKSGQLESVLPDWKPNGLNIYALYSSRKHLSPAVRAFID 284


>gi|50083687|ref|YP_045197.1| LysR family transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49529663|emb|CAG67375.1| putative transcriptional regulator (LysR family) [Acinetobacter sp.
           ADP1]
          Length = 299

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 132/293 (45%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +  +F  VA+  SF+ AA +L L +S+++  I  LE    ++LF R  R ++LT+
Sbjct: 2   MDRLQQFEIFIEVAKRESFSEAALRLDLPRSTVTAAIQNLEASYKVRLFQRTTRRVSLTQ 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    +  +  +Q       G +++     +   ++   + +F   YP 
Sbjct: 62  DGKRILPECQNLLADYQLLEQMIQTHHQDYQGIIKVDMPSRISHQIVVPAIGDFFQQYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+IQL   +   ++     DC +R+   +++SSLI + +  + M   A+P YL+    P 
Sbjct: 122 IRIQLHSSDHLTNLVEQEVDCVVRVG-ILENSSLIAKTVGHLSMVNCASPTYLQTFGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L +H L+ + + +      F +             + L VN+  + +Q    G GI
Sbjct: 181 QLKDLHQHQLVNYQNGVGDQQGTFFY-----GDQYIKLNTRLSVNNTEAYIQAARAGLGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +P Y V  +     LV I++D + PS  +   YP       +L  F +++ 
Sbjct: 236 IQVPYYDVYQDLLSGRLVEILKDDVCPSLPLNVLYPNRHYIPRRLDVFMSWLI 288


>gi|254485628|ref|ZP_05098833.1| transcriptional regulatory protein [Roseobacter sp. GAI101]
 gi|214042497|gb|EEB83135.1| transcriptional regulatory protein [Roseobacter sp. GAI101]
          Length = 299

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 122/299 (40%), Gaps = 11/299 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VA   SFT AA +L  SQS++S  +  LE  + ++L  R  R +  T+ G
Sbjct: 7   DLSDLMAFLAVAEERSFTRAAARLGTSQSALSHVVRRLEERLDMRLLTRTTRNVAPTDIG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       ++ +E    +L     +PSG +RI       Q L+   +   +  + ++ 
Sbjct: 67  EQLIETLRPAFNGIEERLTQLDALRSEPSGTIRINAPRWAAQKLILPAVSSLMKAHANLS 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D + +DI  D  D  +RL + ++   +  R    I M    +P Y   C  P + 
Sbjct: 127 VEVEVDQRMVDIVRDGFDAGVRLGEEVEKDMIAVRIGPDIRMIVVGSPDYFARCGTPQTP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+        P     + W    D      R+      N   S++   + G G+ 
Sbjct: 187 HDLTDHDC--NNLRFPTLGGLYTWEFERDGRELNVRVEGQFISNDPESLIAAAIAGVGLT 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            LP   + D+     LV  + D   P    +  YP   +    L AFR  +  KA  ++
Sbjct: 245 CLPSDHLDDHVSSGQLVACLTDWCPPFLGYHLYYPSRRQ---ALPAFR--VLTKALRYR 298


>gi|197121000|ref|YP_002132951.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196170849|gb|ACG71822.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 319

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 130/288 (45%), Gaps = 7/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L+VF  VA +G F  A  +L LS  +++R I+ LE  VG +LF R  R +  TE G 
Sbjct: 4   LHQLQVFVAVAEAGGFARAGARLRLSPPAVTRAIAALEGRVGARLFNRTTRTVRPTEAGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       V   LET + E       PSG L +  ++  G+  L   ++ FL L+P +  
Sbjct: 64  RFLDPARRVLADLETAEREAAGEGAAPSGHLTLTASVTFGRWALAPVVRAFLGLHPGVTA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L ++ +++  +  D A+R+ + +  S L+ RK+  I     A+P YL+    P S  
Sbjct: 124 SLVLVDRVVNLVEEGVDVAVRIGQ-LPDSDLVARKVGEIRRVLVASPAYLRAHGAPSSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H  I F  L       F       RP+  P    L VN  L+ +     G GI L 
Sbjct: 183 RLRAHAAIAFTGLQAGREWRF---VDGGRPVAVPVAPRLVVNDALAALDAAEAGDGITLA 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y+V +      LV ++     P   V   +P A     K++AF +F
Sbjct: 240 LSYMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDF 287


>gi|157368947|ref|YP_001476936.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320711|gb|ABV39808.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 307

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 132/296 (44%), Gaps = 12/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    ++ +F  V   G+F+ AA++L ++ S++S+ I  LE E+GI+L  R  R L+LT
Sbjct: 1   MSNILKRMAIFSKVVDCGAFSTAAKELGITTSAVSQHIRLLENELGIQLLLRSTRSLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     + H  E  Q  +     + +G+LR+AT+ +   + L   L+ FL  +P
Sbjct: 61  EAGLCFYEDCVLMIHAAERGQQRIAALRGELAGELRVATSTEFATHYLVPALQSFLDEHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L + ++ ID+     D AIR    +  SS +  +L        A+P YL N   P
Sbjct: 121 RITLRLEIHDEKIDLINQRIDLAIR-GGVMADSSYVSTRLARFREVLCASPAYLANHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
            + Q L  H  +TF    P     F  L   D      R    L  N+ +++ +  + G 
Sbjct: 180 ETPQALTHHQWVTF---TPLGNPQFVRLLHPDGDEHRLRMTGRLFTNNGMAMKELALAGK 236

Query: 240 GIALLPDYIVK-----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI    ++ V      +   LV ++ +   P  + Y   P       K++     +
Sbjct: 237 GIIR--NFFVNVEKELNRGELVEVLPEWRLPDISCYAIMPRRDSQPLKVRRLLEHM 290


>gi|107025767|ref|YP_623278.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693051|ref|YP_838584.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105895141|gb|ABF78305.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651051|gb|ABK11691.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 317

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 129/297 (43%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 17  MTDRLDGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 76

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +  GKLR++  +  G + +   + +    YP
Sbjct: 77  DDGQAYYDRCVRALAELEAAEADLDCGRHEARGKLRLSVPLAFGHHCVTPIVLDLARTYP 136

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 137 HLRIDVSITDRFVDLVEEGIDLAVRIGPLADSTSLAVRRLGTQYGSLGAAPSYLARHGTP 196

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H  I +       ++ +   A     +       L  +   +I      G G
Sbjct: 197 QSLDDLKNHRTIAYSR--SGVVQPWYLRAPDGSSVHIDMPHQLSFDDVQAIAAAGASGFG 254

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP +++        +V +++        ++  +P+      K +   + +    
Sbjct: 255 IAWLPSWLLDHYVKRGEMVVVLDRCFVCEGDIHAIWPKTRYLPRKTRCVIDALVEAV 311


>gi|157377244|ref|YP_001475844.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319618|gb|ABV38716.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 300

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 128/297 (43%), Gaps = 6/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LR+F  VA  GS T AA +L LS ++ S  +  LE ++G  LF R  R L LT+ 
Sbjct: 1   MQINDLRLFVRVADCGSITAAATELELSPATASAALKRLEKQLGTSLFIRSTRSLRLTDT 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L   Q  + +   K SG + +A   D+G+++L   L EF+  YP++
Sbjct: 61  GERYLIHCRRALSDLALGQQAVNDVREKISGVVSLAVPSDVGRHVLLPWLDEFMDQYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L + +   D   D  D A+RL  P + SSL+  ++  +     A+P Y+    E  +
Sbjct: 121 KLRLHIGDTLSDFYHDKVDVALRLGTP-KDSSLVAFEIAKVKRLLCASPAYIAKYGEVTT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +L  HN + F  ++ +   D    +   R            N      ++ V G G+ 
Sbjct: 180 IDQLSDHNCLFF--MLEERTHDQWRFSKNGREFKVRVTGNRTCNDAEVARRWAVAGKGVV 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                 ++ +     LV +M D    S  +Y   P     T  +   R+ +  + R 
Sbjct: 238 YKSSLDLEGDITSGRLVPMMTDYQGESADLYLVCPGREHVTPVILLLRDMLRERCRQ 294


>gi|39933988|ref|NP_946264.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|192289408|ref|YP_001990013.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|39647835|emb|CAE26355.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           CGA009]
 gi|192283157|gb|ACE99537.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 307

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 132/290 (45%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF   A +  LS++++S+ ++ LET +G +LF R +R L LT+ G
Sbjct: 6   DFEALAIFAKVVELRSFAAVAAEFGLSKATVSKAVTRLETRLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +++    E  + E    S  P G +R+A  +  G  ++   L EF   YPD+ 
Sbjct: 66  HRLAERAAQLLADGEAAEAEALAQSAAPRGLVRLAVPMTFGVKVIAPLLPEFFAAYPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D  +R+   +  SSL+ R+L  +  +  A+  YL+    P   
Sbjct: 126 IDLHLSDAMVDLIGDGFDAGVRIA-TLPDSSLVARRLCAMPRYTVASKTYLEAYGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H  + +  L       ++        +       L+VN+  +++   + G GIA 
Sbjct: 185 MHLAQHRCLGYAYLSTPNTWHYS--NDAGDQVAVRPGGPLRVNNGEALLPSVIAGLGIAD 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP++IV D      +  I++        V+   P       +++    F+
Sbjct: 243 LPEFIVGDAIAAGEVEVILDGWHQREGAVHLVTPPGGPRPARVEVLSEFL 292


>gi|254504429|ref|ZP_05116580.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222440500|gb|EEE47179.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 310

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 130/293 (44%), Gaps = 10/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LR+F ++A  GS   AA +  +S +++S +++ LE   G+ LF R  R ++LTE+
Sbjct: 1   MLLDNLRLFMIIAEKGSLAAAARETGISTTTVSERLAALEAHYGVVLFNRTTRSISLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      V  ++      ++  +   SG +RI+  +DLG++++   +  F    P +
Sbjct: 61  GRTLVNGARAVLIEVADLDTRIRHGAETLSGLIRISAPVDLGRSIISRAISAFTEENPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L L +  +D+     D A+R    +  S+L  R L +      AAP YLK    P +
Sbjct: 121 SIELSLSDGYVDLVGQGFDMAVRFGN-VTDSTLRVRSLGSFQRLICAAPEYLKRHGTPKT 179

Query: 183 IQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++L  HN +   FG+ +    E         +           VN    I  + + G G
Sbjct: 180 PEDLMNHNCLVMRFGETLDSVWE----FGKKSKKKRVTVRGSRVVNDGWLIRSWALAGHG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I L  +  V ++     LV ++ + + P   +   +P       ++ AF + +
Sbjct: 236 IVLKSELDVAEDIRSGALVSLLSEHLPPPNPLQMMFPPGRAQPRRVTAFADHL 288


>gi|156977860|ref|YP_001448766.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156529454|gb|ABU74539.1| hypothetical protein VIBHAR_06651 [Vibrio harveyi ATCC BAA-1116]
          Length = 309

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G 
Sbjct: 4   LNDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I
Sbjct: 64  LFLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIELYPNVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+     D AIR  +P   S+L+   L         A+P Y+ +  E    
Sbjct: 124 KLELSDSLTDMYTKPVDIAIRYGEP-ADSNLVVLALCGANERILCASPEYVASNPELTKP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L +HN + F        +   W  T +    +  +S  L  N      +  + G GIA
Sbjct: 183 EDLHQHNCLCFMVADSVYNK---WTLTREGETEQVVVSGKLLSNDSDLSHRLAIKGKGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 +  +     LVR++ +    S  +Y    +    T  ++ FR+FI  K
Sbjct: 240 NKSLMDISQDLIEGRLVRVLPEWDCGSVPLYMVCADRRLLTPTIRTFRDFIQEK 293


>gi|254250715|ref|ZP_04944034.1| LysR family regulatory protein [Burkholderia cenocepacia PC184]
 gi|124879849|gb|EAY67205.1| LysR family regulatory protein [Burkholderia cenocepacia PC184]
          Length = 301

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 131/301 (43%), Gaps = 11/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++
Sbjct: 1   MDKFSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     V  +L      + +    PSG LR++  +  G   L  ++  F+  +P 
Sbjct: 61  AGAVYYARAKRVLGELADADALVADRGDAPSGPLRVSVPVAYGLRRLAPHVAAFVARHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+     D AIRL     ++ ++ R L T   +  A+  YL     P 
Sbjct: 121 LDLDLQLTDERVDLVSARIDVAIRLGDAAPTAEVVARPLGTFRRYVVASRAYLDAHGTPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  H  + F   + +    F       R         ++ N    + +  + G+GI
Sbjct: 181 TPAELVDHACLRFHFGVDQQTWTF---VGAQRTTQVVVTGRMKSNHSEVLREAALDGAGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD++V    +   L R+ +       +    +   Y    + + ++ AF +F+   A
Sbjct: 238 ALLPDWLVDTDLEAGRLQRLFDQYDVTPGSARAVITALYLPNQRGSKRVTAFIDFVESLA 297

Query: 295 R 295
           R
Sbjct: 298 R 298


>gi|224584690|ref|YP_002638488.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469217|gb|ACN47047.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 310

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 9   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 69  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDL 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 129 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARHPVS-S 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 187 LESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 246

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 247 LLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 300


>gi|157373290|ref|YP_001471890.1| LyrR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157315664|gb|ABV34762.1| transcriptional regulator, LyrR family [Shewanella sediminis
           HAW-EB3]
          Length = 301

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 138/297 (46%), Gaps = 13/297 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  D     ++ VF  V   GS T AA +L +S+S +S+ +  LE     +L +R  R +
Sbjct: 1   MLMDAAQLYRMLVFANVVEQGSLTAAANELGISRSMVSQHLKKLELRCATQLIHRTTRKM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   +   +E+    +  +   +    +  G ++I+  + LG+  L  ++ +F  
Sbjct: 61  ALTEDGQSFYHYCAELLQLAKQAENSTKPQDRELQGSIKISAPVCLGEQNLIQHIGDFNK 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I+I L L+++ +++  +  D AI+  +  + +S+   +L     +  A+P Y++  
Sbjct: 121 RYPKIRITLRLEDRRLNLLENNIDIAIQTEQATEFTSI---RLGQFDEYLIASPEYVEQH 177

Query: 178 REPLSIQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             PL    L KH  I    + +PK     N      +    P ISC   NS   I++   
Sbjct: 178 GSPLHPDMLAKHQWIMQSSNYLPKSCLLQNSFGDKFKIKINPFISC---NSNHGIVKLAK 234

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GIA+LP Y+V+   ++   V I+ D       +Y  +P       +++AF NFI
Sbjct: 235 QGLGIAILPSYLVQAQIESGKFVHILPDYHLREGVIYAVHPFDDVTPPRVRAFLNFI 291


>gi|149921365|ref|ZP_01909819.1| regulatory protein, LysR:LysR, substrate-binding [Plesiocystis
           pacifica SIR-1]
 gi|149817798|gb|EDM77262.1| regulatory protein, LysR:LysR, substrate-binding [Plesiocystis
           pacifica SIR-1]
          Length = 303

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 132/298 (44%), Gaps = 5/298 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA    F  AA QL +S+++++R +S LE  +G++L  R +R ++ TE
Sbjct: 1   MDQLHTMRVFVAVAECRGFAKAARQLGISRAAVTRAVSTLERSLGVELLSRTSRAVSPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +   ++ +      +  +P+G LRI +++  GQ  +   L ++L  YP+
Sbjct: 61  VGASYLVDCRRILADVDESHAAAAGAHARPTGTLRITSSVLFGQLYVLPILTDYLDAYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ Q +  ++  ++  +  D A+RL + +  SSL+  ++  +     A+P YL+    P 
Sbjct: 121 VRAQALFVDRVTNMVAEGIDVAVRLGQ-LPDSSLMATRVGRVRRLICASPAYLERHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H ++  G    +                      L  ++  + +     G G+
Sbjct: 180 RPEDLAEHRVVVGGGEGERVEWHLGTEEGAGEERIVRVRPRLACSTNHAAIAAATSGWGL 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +  Y V    +   LV ++ED       V+  YP       K++AF      + R+
Sbjct: 240 TRVLSYQVGEALEQGRLVAVLEDCEPAPIPVHIVYPGGRHAPAKVRAFVELAAPRLRE 297


>gi|295676129|ref|YP_003604653.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295435972|gb|ADG15142.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 296

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 128/294 (43%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++++RVF  +A   SFT AA+ L + +++++  +  LE  +G +L  R  R + LT 
Sbjct: 1   MDRFEEMRVFVRIAERQSFTRAADDLQIPRATVTNLMKRLEQRLGARLLERTTRTVRLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +E  +     S+V P G LR+     L ++ +   L  FL  +PD
Sbjct: 61  DGDAHYQRCVRLIADMEEAEGAF--SNVAPKGLLRVNVQGTLARHFVVPALPAFLERFPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IELMIGEDDRLVDLVREGIDCVLRAG-VLQDSSMVGRRVAQLQQVTVASPAYLATYGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L  H  + +            +     R       S + V+         + G GI
Sbjct: 178 DPGALSTHRAVNYVSSATGKPLPLEFRID-GRDTALVLPSAVSVSGAELYAGAAIAGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V D      L  I+ D   P   V   YP+  + + +++ F  ++  
Sbjct: 237 VQVPRYRVDDELTAGRLRVILADYPPPPMPVSVLYPQNRQLSSRVRVFAQWLRE 290


>gi|317049580|ref|YP_004117228.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951197|gb|ADU70672.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 299

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++LR +  V  +GS T AAEQL  + S ISR +S LE+++   L +R  R L LT
Sbjct: 1   MKITLEELRAWVTVVDTGSITSAAEQLEQTSSGISRALSRLESKLETTLLHRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   +E  + ++ +    P+G+LR+        +++   +  F   +P
Sbjct: 61  EEGQIFLEHARQILASVELAEEQIAQRRDVPAGRLRVNAAAPFMLHVIVPLVDAFRQRFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  D+  ID+     D AIR+ + ++ SSL  R L +  +   A+P YL     P
Sbjct: 121 QIQLELNTDDIVIDLLEQQTDIAIRVGE-LRDSSLRARVLGSSAIRLLASPAYLAKHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++  L  H L+ F  L    +    W               L  +S  ++ Q  + G G
Sbjct: 180 QTVASLHDHQLLGFSQLEAHNV----WPVWQQEGEFLRVKPTLSASSGETLRQLALAGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L D++ + +     LV+++E +       ++  Y        ++  F +F+  +  +
Sbjct: 236 IVRLSDFVSRGDRVSGRLVQVLETETRELRLPIHAVYYRNQSLASRISCFLDFLREQIEE 295


>gi|158334782|ref|YP_001515954.1| LysR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158305023|gb|ABW26640.1| transcriptional regulator, LysR family [Acaryochloris marina
           MBIC11017]
          Length = 294

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 124/297 (41%), Gaps = 14/297 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   LR+F  +A     + AA+ L LS +S S ++  LE  +G +LF R  R ++LT  
Sbjct: 1   MDILSLRLFLRIAARSGVSAAAQDLSLSPASASARLVKLEETLGFRLFNRTTRAVSLTTD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        ++   LET    ++    +  G LRI      G+  +   L EF   +P +
Sbjct: 61  GEAFLPYAQQMIETLETGLSAVKGQGAEAEGVLRITMPGSFGRMYIIPALAEFHARHPRV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L ++ +D+     D  IR   P+  SSL+ RKL        A+P YL+    P +
Sbjct: 121 SLDLRLSDEVLDVVEGAYDLIIR-NAPLADSSLMLRKLAADRRILVASPTYLEQHGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  ++  ++         W     + I  P      VN   ++ +    G GI 
Sbjct: 180 PDDLVNHQCVSLAEVT-------KWKFKNGQAISVPH--SFMVNDGEALRKMLEQGLGIG 230

Query: 243 LLPDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +   +   +   +  LV ++ D +     +++  YP       K+ A  +F+  + +
Sbjct: 231 IKSVWNASESLKSGLLVEVLPDFLLMVDVSIWLLYPSRRIIAPKVYAMIDFLLERFQ 287


>gi|54302278|ref|YP_132271.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46915700|emb|CAG22471.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 304

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 7/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
             R F  +  SGS + A  +L+ S +++S  ++ LE +   +L  R  R   LT +G   
Sbjct: 16  DYRTFLEIVHSGSISAAGRRLNASPANVSAVLARLEKQYDARLLSRTTRNQQLTYEGEHF 75

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++       + +           +  G + I+ T D G+N+L   L EF+ LYP + I L
Sbjct: 76  YQFCLLAADQEDELLN-HLSKQQQLQGSIAISCTCDFGRNVLVPLLDEFMTLYPQLSIHL 134

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +K  D+  +  D AIR    ++ S+L+ R+L   H    A+P YL     P S++EL
Sbjct: 135 HLTDKLSDLVKESIDVAIRFGA-LKDSNLVARRLADNHRVLVASPEYLAQHGHPQSVEEL 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +          E        ++       +    N+   +  + +   GIA+   
Sbjct: 194 ADHACLLISREGETQAEW--QFNKANQLYSVAVNAAFSSNNGEVVKHWALASKGIAMKSI 251

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + VK    +  LV ++++       VY  +P    +  ++ A  +F+    + 
Sbjct: 252 WDVKAALADGTLVSVLDEFQQDDGAVYAVFPNRKFSPQRITALIDFLKQALQQ 304


>gi|26246309|ref|NP_752348.1| LysR family transcriptional regulator [Escherichia coli CFT073]
 gi|91209363|ref|YP_539349.1| putative LysR-like transcriptional regulator [Escherichia coli
           UTI89]
 gi|117622573|ref|YP_851486.1| putative LysR-like transcriptional regulator [Escherichia coli APEC
           O1]
 gi|191173547|ref|ZP_03035073.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|218557215|ref|YP_002390128.1| LysR family transcriptional regulator [Escherichia coli S88]
 gi|237707713|ref|ZP_04538194.1| LysR family transcriptional regulator [Escherichia sp. 3_2_53FAA]
 gi|306813222|ref|ZP_07447415.1| putative LysR-like transcriptional regulator [Escherichia coli
           NC101]
 gi|331656359|ref|ZP_08357321.1| transcriptional regulator, LysR family [Escherichia coli TA206]
 gi|26106707|gb|AAN78892.1|AE016756_75 Putative LysR-like transcriptional regulator [Escherichia coli
           CFT073]
 gi|91070937|gb|ABE05818.1| putative LysR-like transcriptional regulator [Escherichia coli
           UTI89]
 gi|115511697|gb|ABI99771.1| putative LysR-like transcriptional regulator [Escherichia coli APEC
           O1]
 gi|190906142|gb|EDV65755.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|218363984|emb|CAR01649.1| putative LysR-like transcriptional regulator [Escherichia coli S88]
 gi|226898923|gb|EEH85182.1| LysR family transcriptional regulator [Escherichia sp. 3_2_53FAA]
 gi|294492910|gb|ADE91666.1| transcriptional regulator, LysR family [Escherichia coli IHE3034]
 gi|305853985|gb|EFM54424.1| putative LysR-like transcriptional regulator [Escherichia coli
           NC101]
 gi|307628224|gb|ADN72528.1| putative LysR-like transcriptional regulator [Escherichia coli
           UM146]
 gi|312944887|gb|ADR25714.1| putative LysR-like transcriptional regulator [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|323958721|gb|EGB54422.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
 gi|331054607|gb|EGI26616.1| transcriptional regulator, LysR family [Escherichia coli TA206]
          Length = 329

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 142/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 23  MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 82

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G  L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 83  SLTEEGQHLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 142

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 143 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 201

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 202 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVVGGNEEFEIEVSGKYISNDDESMIRM 261

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 262 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 321

Query: 292 LK 293
            K
Sbjct: 322 EK 323


>gi|107023597|ref|YP_621924.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690681|ref|YP_836304.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893786|gb|ABF76951.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648770|gb|ABK09411.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 295

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 131/287 (45%), Gaps = 6/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R +  +E  +G +L  R  R L+LT+ G    
Sbjct: 7   MRLFVKVAELRSFARAATELNISNSSATRLVMSIEDRLGARLLNRTTRSLSLTDAGHLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  +     +P G L+IA  +  G ++L   +  F + +P I  ++ 
Sbjct: 67  AQIRHVIDEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKMRHPAIVPEVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D  + L + I +++L++R L  +     AAP Y +    P   Q+L 
Sbjct: 127 IVDRHVDLVSEGFDVGLLLSQHISNNTLVKRPLTRLRQLVCAAPQYAERHGTPAHPQDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F          F+   T  R    P  S    N+   I  + + G GIA+LPD+
Sbjct: 187 SHACLAFHADFMGEYLSFDHDQT--RITVRPNKSA-SSNNVGLIRNWALSGMGIAVLPDF 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +VK   D+  L+ ++      +  +   YP       K + F + + 
Sbjct: 244 LVKSDLDDGRLLALLPGYRLEALEMNVAYPSRRHFPRKARLFVDHLI 290


>gi|262171056|ref|ZP_06038734.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
 gi|261892132|gb|EEY38118.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
          Length = 315

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  
Sbjct: 8   QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +   Q E+++   + +G +R   +   G   +   L++    YP++++++
Sbjct: 68  YSQCRELLTIVTNAQSEMEDQRDEVAGLIRPGLSQSFGTLHVLPALEQLRQQYPELKVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++        A+  YL     P    +L
Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASAEYLLRHGTPAQPMDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + +        +   W  + D      ++S    V+   ++    V G GIA L 
Sbjct: 187 MDHNCLIYRS---WERDYTRWSFSRDGQSQTVKVSGNYSVDLAEAVRDAAVAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y+++D      L++++ +         Y  YP       K  A   FI
Sbjct: 244 TYLLRDEFRTGQLIQLLPEWCANQQMPFYAVYPSRQHMPKKTSAVIEFI 292


>gi|194433531|ref|ZP_03065809.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|194418294|gb|EDX34385.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|332093296|gb|EGI98355.1| hypothetical protein SD15574_1907 [Shigella dysenteriae 155-74]
          Length = 307

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLKVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLVIKERDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|293408440|ref|ZP_06652279.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471618|gb|EFF14101.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 308

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 145/302 (48%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 2   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 61

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 62  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARVLVEPHIGEFLT 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 122 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAIPVSPLIKLVTVASPDYLKE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +  +A  +             N   S+++ 
Sbjct: 181 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEFEIEVSGKYISNDDESMIRM 240

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 241 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 300

Query: 292 LK 293
            K
Sbjct: 301 EK 302


>gi|319792995|ref|YP_004154635.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595458|gb|ADU36524.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 301

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 131/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V  +GSF+  A+QL L +S++S+ I+ LE  + IKL  R  R +T T  G + 
Sbjct: 6   AMRAFVRVVDTGSFSRTADQLALPRSTVSKLITDLEKHLNIKLMQRTTRAVTPTSDGIEY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +        ++++ +  ++   VKPSG LRI        +LL   L +F   YP+I + +
Sbjct: 66  YGHAMRWIAEMDSVESAVRGKKVKPSGHLRIDAPAVFANSLLIPELPDFHREYPEITVAV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ + I  +  DC IR  + +   +++ R++  +     AAP YL     P S ++L
Sbjct: 126 GISDRPLKIVEEGVDCVIRAGR-LDDMAMVGRRVTELQYVTCAAPAYLDCKGIPSSPEDL 184

Query: 187 D-KH--NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
              H      F    P+ +     +        E        N    + +  + G G+  
Sbjct: 185 QLNHAAACYFFSTGKPELL-----IFERGNERFEIGNCVFSTNEGNGLKEMLLAGLGVGQ 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               IV+   D+  LV ++ED   P+   +  YP       +LKAF +++  K
Sbjct: 240 HFRRIVQPYLDSGELVAVLEDWSRPAMPFHILYPPNRHQNARLKAFADWVVQK 292


>gi|13472647|ref|NP_104214.1| transcription regulator [Mesorhizobium loti MAFF303099]
 gi|14023394|dbj|BAB50000.1| transcription regulator [Mesorhizobium loti MAFF303099]
          Length = 292

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 132/287 (45%), Gaps = 7/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V  +GSF+ AA  L + QS++S+ ++ LE  +G++L  R  RGL+ T+ G   
Sbjct: 6   AMSTFIRVIETGSFSAAARHLRVGQSAVSKAVAQLEERLGVRLLSRTTRGLSPTDAGLSF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +        + +  +   + ++   +G LRI T++  G+  +   LK FL  +P + +++
Sbjct: 66  YEGAKRAVDEADEAENAARGTAAALTGLLRIGTSVTFGRLHVVPRLKAFLDAHPRLDVEV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D++++D+  +  D  +RL +    +  I RK+        AAP YL    EP++  EL
Sbjct: 126 AMDDRNVDLVEEGVDVMLRLGESFAPAH-IGRKIAACRRLVVAAPSYLAREGEPIAPDEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I F          F   A      G+ R   L+V S   I +  + G G  +  +
Sbjct: 185 SRHEAILFVRAGTSIRWTFRRGAEEVSLAGQGR---LRVTSAEGIREAVLSGIGFTVGSE 241

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++      +  +  I+ +   P   ++  +P   K + + + F  F+
Sbjct: 242 WMFDAELRSGAVRPILTEWTLPPVELWALFPAGRKASARARTFVEFL 288


>gi|194443789|ref|YP_002042153.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194402452|gb|ACF62674.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 303

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARHPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWSVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    +   L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALEEGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|163851575|ref|YP_001639618.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|163663180|gb|ABY30547.1| LysR substrate-binding [Methylobacterium extorquens PA1]
          Length = 313

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF VVA + SF  AA++L LS++++S+ ++ LE  +G +LF+R +R L LTE G
Sbjct: 6   DFEAWAVFAVVADALSFARAADELGLSKATVSKAVARLEGRLGARLFHRTSRRLALTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  +    +++  P G++R+A  +  G   +   L EFL  +  + 
Sbjct: 66  RLAREDAAGLLAAGEAAEARALDANGVPRGRVRLAAPMSFGVAHVAPVLPEFLAAHAQVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+     D  +R+   +  SSL  R+L  +     A P YL+    P   
Sbjct: 126 VDLHLSDALVDLVGGGFDLGLRIAA-LPDSSLRVRRLCGVRRSLVATPAYLERYGPPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L     + +  L       F         +       L+ N+  ++      G G+A+
Sbjct: 185 EDLKARACLGYAYLPTPDRWPFT--NAAGETVTIVPEGPLRANNADALAPALRAGLGLAV 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            PD+ + ++     L R+M D   P   +    P  L    ++ A   F+
Sbjct: 243 QPDFTIWEDLKSGRLERVMPDWQPPPIALNLVMPPGLPRPARVSALIAFL 292


>gi|325923063|ref|ZP_08184758.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325546455|gb|EGD17614.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 307

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 131/289 (45%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F     +GSF+ A   L L Q ++SR ++ LE  +  +L  R  R L LT +G + +
Sbjct: 13  MTCFARAVETGSFSAAGRDLGLGQPNVSRHVAALEEHLHTRLLNRSTRKLVLTPEGERYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +  +++ L++ +V+PSG LR+A    L    +   + EFL  +P +++ L 
Sbjct: 73  AEVRRILDAVGESEMSLRD-NVQPSGLLRVACPTALSHQYVMPLVPEFLRRFPGLELDLQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +++  + A+ AIR+   +++S+L  R++ +      A+  YL     P    +L 
Sbjct: 132 INDRFVNLLDEGAELAIRIGH-LENSALRARRIGSFKRVCVASKDYLAERGIPTVPDDLR 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ + +  L       F       + +  P    ++VNS  +  +    G GI   P++
Sbjct: 191 QHDCVLYTLLASGASWRF-------KEVDVPVTGRIRVNSPEAAREAVSAGLGIGQGPEW 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +      +L  ++     P+  ++  Y        +   F +FI   
Sbjct: 244 LFEQGLNTGHLQIVLNAFAGPAVPMHIMYAANRLVAKRAIVFMDFIAEA 292


>gi|329113272|ref|ZP_08242055.1| Putative HTH-type transcriptional regulator LtrA [Acetobacter
           pomorum DM001]
 gi|326697413|gb|EGE49071.1| Putative HTH-type transcriptional regulator LtrA [Acetobacter
           pomorum DM001]
          Length = 324

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 9/299 (3%)

Query: 2   SFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           S D    L  F  VA +GSF+  + +  +SQ +ISR I+ LE   G  LF R  R LT+T
Sbjct: 20  SMDLLSALHSFVRVAATGSFSAVSRETGVSQPTISRHIALLEAHYGTTLFARTTRSLTMT 79

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L     EV   LET +  L       SG +R+  T   G   L   + E L  +P
Sbjct: 80  EDGRSLLPHAYEVLEILETAETVLGRRRASVSGLVRLGVTTAFGLC-LTRRIGELLERHP 138

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I++++ +   D+  +  D A+R+   I   SLI RKL  +     AAP  L  C  P
Sbjct: 139 DLAIEVVMRDAFGDLVEEGLDLAVRVGD-IAEGSLIARKLGVVRKWLVAAPSCLARCGTP 197

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  ++L ++  + +         D+N+    +  +  P  +  + NS  +++     G G
Sbjct: 198 MHPRDLPEYPGVVYN--YGSSRLDWNFERDGEESVIAPS-AVFRANSSEAVLYAVESGLG 254

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I LLP++ V++   +  L R+  D   PS   Y  +        + +   +F+   + D
Sbjct: 255 IGLLPEFQVREAVADGRLTRLFADWNIPSLPFYAVHTGPRTLPLRTRTVLDFLIEVSAD 313


>gi|83748877|ref|ZP_00945888.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83724443|gb|EAP71610.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 336

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 135/295 (45%), Gaps = 9/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + VF     +G F  AAE+L LS+S++ + I+ LET +G++LF+R  R   LTE G 
Sbjct: 9   LDGVAVFVEAVEAGGFARAAERLALSRSAVGKSIARLETRLGVRLFHRTTRTQNLTEDGQ 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        +L   +  L+    + +G+LR+   +  G+  +   L +F   +P +++
Sbjct: 69  IYYERCLRAIEELRVAESLLESGKQEVAGRLRMTMPVLFGRYCIAPILLDFAREHPKLEL 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +D+  +  D  IR     +++ L  R L T      AAP YLK   EP +I+
Sbjct: 129 ELSFSDRPVDMIAEGFDLGIRSGALGEATGLCARPLATQPKVLCAAPDYLKARGEPDTIE 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            L  H+++       +    + WL    D  + E R+ S L+ +         V G GIA
Sbjct: 189 TLATHDVLIH----WRTGHPYPWLLPGADGRLTEVRLASRLRFDDLEVTADAAVAGMGIA 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LP ++V+D      LV + E     S   +  +P       +++   + +  K 
Sbjct: 245 WLPHWLVRDRIQAGALVALWEKRPAASMDSHAIWPATDYMPLRVRLAIDTLVEKL 299


>gi|322832440|ref|YP_004212467.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167641|gb|ADW73340.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 299

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 119/288 (41%), Gaps = 7/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +LR F  VA   SF  AA +L+L+ S++S  +  LE  +G++L  R  R ++ TE G
Sbjct: 5   EFGELRAFVAVAEEKSFRKAAARLNLTASTLSHSLRSLEERLGVRLLNRTTRQVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L          +     ++      P G +RI T       +    L +F   +PDI 
Sbjct: 65  YALLAEVVPALSVISDAMEKVNALRGIPKGTVRINTPRIAADMVFLPQLPKFCQAFPDIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI  +  D  +R+R  +Q      R     H   Y +P Y   C +P + 
Sbjct: 125 LELATNDGFVDIISEGFDAGVRIRGDVQQDMSAVRLTADFHSAVYGSPDYFARCPQPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I   ++    +  +       R I  P    L V+S   + +  + G G+  
Sbjct: 185 ADLKNHACIGRREIASGSLYRWE-FEKNGRQITVPVSGPLVVDSVSMMTRIALDGIGLVY 243

Query: 244 L-----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
                  D +V +   L+R++ED        +  YP   +    LKA 
Sbjct: 244 SAQSAEHDALVAE-GKLIRVLEDWSVTFPGFFLYYPGHRQLPAALKAV 290


>gi|299533615|ref|ZP_07046989.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718337|gb|EFI59320.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 312

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA+  S T+AA  + ++ +++S+ I  LET + ++LF R  R L LTE G    
Sbjct: 9   LAAFEQVAQHRSLTYAAHAIGVTPAALSQTIKKLETRLDVRLFDRTTRSLNLTEAGRIYL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S     L     +LQ  +    G LR+  +   GQ L++  L EF  L+P I ++L+
Sbjct: 69  ERISPALTNLREATEDLQLQAGVEGGTLRLTISHPAGQVLVEPMLAEFFALHPHIHVELV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+  +DI  +  D  IR  + ++   +       + M   A+P YL+    P    EL+
Sbjct: 129 YDDGFVDIVREGFDVGIRNGESLEGDMVAVPLTQDLTMCFGASPAYLRTHGTPEHPDELE 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I +       +  + W   +D  + E  +S  L VN   + M+  + G G+     
Sbjct: 189 QHLCINYRMSSSGAL--YKWEFNIDGKLSERSVSGPLTVNHSDTAMRAALDGIGVITGWR 246

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             + D      L+ +++         Y  YP       K + F +F+    +
Sbjct: 247 ESMTDAFKTGQLIEVLKPYWASFPGFYAYYPHRTHLPLKTRIFLDFLVQHVQ 298


>gi|316935119|ref|YP_004110101.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315602833|gb|ADU45368.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           DX-1]
          Length = 305

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 135/302 (44%), Gaps = 11/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  VA    F  AA +L +S S+++R ++ LE  +G +L  R  R + LT+
Sbjct: 1   MDRLDTMSAFVAVAELQGFAPAARKLGMSPSAVTRLVAALEQRLGTRLLQRTTRSVALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +   LE          V PSG+L ++  +  G+  +   L ++L  YP 
Sbjct: 61  TGARYLERVRRILADLEEADASAAAERVTPSGRLVVSAPVGFGRRYVAPLLSDYLRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +L L +  I++  D  DCA+R+   +  SSL+ R+L  +     A+P YL     P 
Sbjct: 121 VTGELRLSDLMINLVEDGVDCAVRIGH-LSDSSLVARQLGAMRRIVVASPDYLAARGVPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  E+  H+++ FG    +     +W   VD R +  P +  L  N     +     G G
Sbjct: 180 TPAEIAAHDVVHFG----QTGAPVDWRFVVDGRDVRVPCVPRLVSNVADVAILDAERGGG 235

Query: 241 IALL---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +A +             L  ++ D   P   +   YP A   + K++AF + + ++  DW
Sbjct: 236 LARVLAYQAADAIAAGRLQIVLADYEVPPLPIAMVYPTARLLSAKVRAFID-LAVETADW 294

Query: 298 KF 299
           +F
Sbjct: 295 QF 296


>gi|269964801|ref|ZP_06179038.1| putative LysR-family transcriptional regulatory protein [Vibrio
           alginolyticus 40B]
 gi|269830461|gb|EEZ84683.1| putative LysR-family transcriptional regulatory protein [Vibrio
           alginolyticus 40B]
          Length = 295

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 122/284 (42%), Gaps = 11/284 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  V  SGSFT  AE+L +S+  ++R +  +E  +  +L +R  R ++LT  G +   
Sbjct: 8   KVFVDVVYSGSFTATAERLDMSRPMVTRYVEAMENWLQTRLLHRTTRKVSLTTAGERSLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  + + T      +  + SGK+R+A++   G + L   +  F+  +P + I + L
Sbjct: 68  QIERWLKQAD-TLTSNIAADGELSGKIRLASSTSFGFSQLIPVVNSFMQKHPKVHIDIDL 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +   D++    D AIR+       SLI + +        A+P YL+        ++L  
Sbjct: 127 QDSVSDLTEQRIDLAIRIASD-PDPSLIGKPIAVCESVLVASPQYLQTHHAIAHPRDLSS 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H+ + +     K  E   W  +         I C L  N   +++   + G GI++LP Y
Sbjct: 186 HDCLGY-----KNFERHVWHLSQGDQFESVGIECRLTSNEATALLHGALQGMGISMLPTY 240

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +      +  L  ++ D       +Y  Y      +  ++AF +
Sbjct: 241 LSNIYLKSGQLESVLPDWKPNDLNIYALYSSRKHLSPAVRAFID 284


>gi|149201727|ref|ZP_01878701.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
 gi|149144775|gb|EDM32804.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
          Length = 306

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 127/299 (42%), Gaps = 4/299 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   A  GSF+ AA  L L+ +++SR ++ LE  +G++LF+R  RGL LTE G
Sbjct: 3   TLSNLEAFVRSAECGSFSGAARILALTPAAVSRSVAMLERNLGVRLFHRSTRGLRLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   E   +L+     +      P+G L+++     G   +   L  FL  YP I+
Sbjct: 63  ESFLASVGEPLDRLQGAISAVTAQGPTPAGTLKLSMPPSFGLAHVLPLLPGFLAQYPLIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +   +N+ +D+  +  D AI      ++   + R+L  +H+ A A+P Y+   R P   
Sbjct: 123 AEWHFENRVVDLVTEGYDAAI-GGAIERAPGTVARRLAPLHVVAVASPAYMAGRRGPTDP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L + + I    L    +          + +       + VN   +I +   LG GIAL
Sbjct: 182 AGLAEFDGIAMRVLRTGRIRHLIMRNRAGQEMEAALNETVVVNEPSAIREAAKLGLGIAL 241

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           L    V    ++  L+R++ D       +   Y        K +AF ++I    ++ + 
Sbjct: 242 LAVAEVLSDLEDGRLIRLLPDWYADDGGISVYYASRSFLPAKTRAFIDWIDAAFKEQRL 300


>gi|328469377|gb|EGF40323.1| transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 307

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G 
Sbjct: 4   LNDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I
Sbjct: 64  LFLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+     D AIR  +P   S+L+   L  +      A+P Y+    E  S 
Sbjct: 124 KLELSDSLTDMYTKPVDIAIRYGEP-ADSNLVVLALCGSNERILCASPEYVATHPELTSP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN + +  ++   + +   L              L  N      +  + G GIA 
Sbjct: 183 ADLTQHNCLCY--MVADSVYNKWTLTRDGEKEQVVVNGNLMSNDSDLPHRLAIKGKGIAN 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +  +     LVR++ +       +Y    +    T  ++ FR+FI  K
Sbjct: 241 KSLMDISRDLIEGRLVRVLPEWDCGPVPLYMVCADRRLLTPTIRTFRDFIQQK 293


>gi|222081165|ref|YP_002540528.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725844|gb|ACM28933.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 299

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 127/292 (43%), Gaps = 4/292 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +VA   SFT AA +L  SQS++S  I  LET VG++L  R  R L  TE G +L
Sbjct: 8   DLNAFLIVAEERSFTRAAAKLGTSQSALSHTIRRLETRVGVRLLTRTTRSLAPTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     + T    L E   KP+G +RI T+      +L   L++FL  YPDI ++L
Sbjct: 68  LATLKPALDSIGTELSSLGELREKPAGTIRITTSEHAANTVLWPALEKFLPNYPDIHVEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D+   DI  +  D  +RL + +    +  R    I M    +P Y +  + PL  Q+L
Sbjct: 128 SIDSGLTDIVTERFDAGVRLGEALAKDMIATRISPDIRMIVVGSPAYFEQRKIPLVPQDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I         +  +  L    R +       L  N+   I++    G G+A + +
Sbjct: 188 AEHQCINLRLRSAGGLYAWE-LEKDGREVRVRVEGQLAFNNVEMIVRAATAGFGLAFVME 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             V+    +  L+ ++ED  +P    +  YP   + +         +  + R
Sbjct: 247 DHVRKHLADGRLLCVLEDWCSPFPGYHLYYPSRRQPSAAFALLVEALRYRDR 298


>gi|120600019|ref|YP_964593.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120560112|gb|ABM26039.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
          Length = 299

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 137/298 (45%), Gaps = 11/298 (3%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M  +   D +R+F+VVA+ GSF  AAE L +  S++SR+I+ LE  +G++L +R A  + 
Sbjct: 1   MKLNYSLDDMRLFWVVAQQGSFKLAAEHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVN 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT  G +       ++ +L     EL     +  GKLRI+  I+     L  +L  F L 
Sbjct: 61  LTATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYLWLGESLNAFQLR 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP+I I L L N +ID+S +  D A R+ +P +    I R L TI     A+        
Sbjct: 121 YPNIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISFVLCASSS-ATQWH 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
              SI+EL++H +I      P          T      EPR +  L V+      Q  + 
Sbjct: 179 SLQSIEELEQHPVII---AKPAKTWRLQHNITGQDFEFEPRGNIKLAVDDMAIASQAVMA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI LLP  +  +   +  L++I+ +      T Y  Y +      +++   +F+  
Sbjct: 236 GLGIGLLPISMASERIQSGKLIQILPEWKGAPRTAYLMYRDRDNLPLRVRLLIDFMLE 293


>gi|326317865|ref|YP_004235537.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374701|gb|ADX46970.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 305

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 133/288 (46%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V R  SF  AA +L  S + +S++I  LE E+ +KL +R  R + +TE+G +
Sbjct: 8   DDLRVFTAVVRKASFAEAATELGASPAYVSKRIRLLEEELAVKLLHRTTRRVAVTEEGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +    +    E+  +  +P G LR++ +   G+ ++   +   +  +P +Q++
Sbjct: 68  VFHWAQRILDDWDQLLQEVAVTRREPRGLLRLSCSFGFGRRIVAPAVSRLVERHPGLQVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  IR+   I +  LI R+L   H    AAP YL     P ++ +
Sbjct: 128 LEVFDRLVDVAGEGFDLDIRVGDEI-APHLIARRLAGNHRVLCAAPAYLARKGMPRAVDD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ +   +               DR +       L  N     +Q+ V G GI L  
Sbjct: 187 LASHDCLVIKERDHPFGVWRLRSGAADRTVKV--RGPLSANHGEMAVQWAVDGRGIVLRS 244

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LVR++ +    +  V+  YP  L+ + K++    F+
Sbjct: 245 LWDVGPDLAAGRLVRVLPEWQQEA-NVWAVYPTRLERSAKVRVCVEFL 291


>gi|255292733|dbj|BAH89839.1| LysR family transcriptional regulator [uncultured bacterium]
          Length = 308

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 132/300 (44%), Gaps = 4/300 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   +++RVF  VA    F  AA +L ++++  +R +S LE E+G +L  R  R ++ T
Sbjct: 1   MTGRIERIRVFVKVAELNGFAAAARELGVTRTIATRYVSELEDELGAQLLVRTTRKVSTT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G         +   L+     + +     SG+L ++  +  GQ  L   L  F   YP
Sbjct: 61  VAGRLYLERMQTLLADLDRADELINQQHATLSGELCLSAPVSFGQRFLPRVLAGFRESYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ +++ L ++ IDI  +  D A+R+  P +  S I RK++ I      +P YL+     
Sbjct: 121 EVLLKIHLTDRFIDIIEEGFDMALRISGPPEDVSTIWRKIMPIRRSIVVSPGYLRTAPPL 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H ++ +               T +      R    + NS   I+   +   G
Sbjct: 181 EQPEDLSGHAILGYSHFPGGQSWKLTHCRTGEVRSATVRHG-FESNSGELIVASALGNGG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +++LPD++V+D      L RI+ D   P       YP       K++AF  FI  + R +
Sbjct: 240 VSMLPDFLVRDELAAGTLRRILTDWTPPEIWPTAFYPPYEMLPAKVEAFTGFIEEQVRAF 299


>gi|200386534|ref|ZP_03213146.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603632|gb|EDZ02177.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 303

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARHPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|107027058|ref|YP_624569.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691745|ref|YP_837278.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896432|gb|ABF79596.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649745|gb|ABK10385.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 300

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 133/297 (44%), Gaps = 12/297 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++++  +   G+FT AA+ L L + ++++ +  LE E+G++L  R  R +++T 
Sbjct: 1   MDRLQTMQIYVQIVERGNFTQAADALQLHRPAVTKAVQQLEQELGVRLLNRSTRRVSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   H    ++   ++       +    P G+LRI   + L + ++   L +F   YP 
Sbjct: 61  EGEAFHARCVQLLAGIDDAFASFPKQRAVPKGRLRIDIALALAKTIVIPALPDFQQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L   ++  D+  +  DC +R+   ++ SS++ R +  + M   A+P Y+     P 
Sbjct: 121 IELVLGASDQPADLIGEGIDCVVRVG-TLKDSSMVARTVGAVSMATCASPAYIARHGLPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H  + F     + + ++ +       I     S L  ++  +++   + G GI
Sbjct: 180 TLDDLRTHRAVNFFTGRNRRVLEWTFRPH-GETIAVKLASSLLTDNSEALLSCGLAGLGI 238

Query: 242 ------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 AL P     D+  L+ ++  V      V   YP       K++ F +++  
Sbjct: 239 VHALRPALQPSI---DSGQLIELLPGVPAVPKPVSVLYPNRAHLPDKVRTFIDWLTE 292


>gi|238754531|ref|ZP_04615885.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia ruckeri
           ATCC 29473]
 gi|238707162|gb|EEP99525.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia ruckeri
           ATCC 29473]
          Length = 302

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 124/287 (43%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AA+ + +S++ ++R ++ +E   G +L +R  R L+LT  G     
Sbjct: 8   EVFVTIVDRGSMIAAADAMGMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTHAGETTLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +     + +  G LRI+ +  L Q  L   +  FLL YP + I L +
Sbjct: 68  RCRKMLAFAQDMDLVDGLENDELRGLLRISCSQSLAQTALAVAVTAFLLRYPQVAIDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ I++  +  D AIR+   +   +LI R L T H    A+P YLKN   P + Q+L  
Sbjct: 128 NNRAINLVEERIDLAIRITNEL-DPNLIARPLSTCHSVVCASPSYLKNKGMPQNPQDLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                            L  N  + ++   + G+GIAL P Y 
Sbjct: 187 HNCLTYSYFGKSLWH----FDHHGVKSSVAVSGNLSANESVVLLSGALEGAGIALQPRYS 242

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  LV+++ D    +  +Y  Y    +    L+   +++  
Sbjct: 243 AMPYLISGELVQLLPDFHPQAMGIYGIYTSRRQMPATLRTLLDYLIE 289


>gi|153839452|ref|ZP_01992119.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149747041|gb|EDM58029.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 307

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 130/291 (44%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G 
Sbjct: 4   LNDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I
Sbjct: 64  LFLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+     D AIR  +P   S+L+   L         A+P Y+    E  S 
Sbjct: 124 KLELSDSLTDMYTKPVDIAIRYGEP-ADSNLVVLALCGANERILCASPEYVATHPELTSP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L +HN + +        +   W  T D    +  +S  L  N      +  + G GIA
Sbjct: 183 ADLTQHNCLCYMVADSVYNK---WTLTRDGEKEQVVVSGNLMSNDSDLPHRLAIKGKGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  +     LVR++ +  +    +Y    +    T  ++ FR+FI
Sbjct: 240 NKSLMDISRDLIEGRLVRVLPEWDSGPVPLYMVCADRRLLTPTIRTFRDFI 290


>gi|89094192|ref|ZP_01167134.1| putative transcription regulator protein [Oceanospirillum sp.
           MED92]
 gi|89081447|gb|EAR60677.1| putative transcription regulator protein [Oceanospirillum sp.
           MED92]
          Length = 297

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 132/286 (46%), Gaps = 8/286 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ +  V   GS+T AA++L  +++ IS QIS LE  + + L  R  R +  T  G 
Sbjct: 4   LNLMQAYLAVYEEGSYTAAAKRLGKTKALISTQISQLEEHLQVSLVTRSTRSVMPTTAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++  ++   +  L+E      G+LRI+   + G+ ++   +   +  +PD++I
Sbjct: 64  SYYEQCRQILDEISNLESRLKEQHHSLVGQLRISAPTNYGELIVMPFISGLIKKHPDLRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++L ++ +DI  +  D AIR+   +  SSLI  ++  + MH  A+  +L     P SI 
Sbjct: 124 EIVLSDRYVDIVSEGFDAAIRIGN-LSDSSLIANQVGQVQMHLCASAEFLATFGTPQSIT 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL+++  + F          F    T    I       ++VNS ++  Q     S ++  
Sbjct: 183 ELNQYPCV-FDSNYRHNYWQFP---TAQGEITVTPTQSIRVNSAVAAAQIARNHSVLSYG 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           PD+ V +      LV ++++       V   YP     + +++ F 
Sbjct: 239 PDFAVAEYIRTGELVTLLDNQFDNCQPVNIIYPHRKHLSARVRTFI 284


>gi|330963653|gb|EGH63913.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 299

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 128/289 (44%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A  GSFT  AE + + +  ++R I  LE  + ++LF R  R + LT +G + +
Sbjct: 1   MQVFVKLAELGSFTKVAEAMQVGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L  T      +     G+LRI       Q      L+ F   +PDI + L 
Sbjct: 61  ERVKSNLADLAETTSMFDRNGSTLRGRLRIDIPAAFSQRSFMETLRGFTRAFPDIDVVLG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DCA+R+ + +  SSL+ R +    M   AAP YL+    P  +++L+
Sbjct: 121 VTDRTVDLVAEGIDCALRIGE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTPEMLEDLE 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  ++F  L         W  +++   +  P    + VN   + +Q  + G GI   P 
Sbjct: 180 RHCGVSF--LSGHNHRPLPWHFSLNGEDLPYPAQGAITVNESNAYVQCGLAGFGILQAPG 237

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             V+    +  LV ++E        V   YP       +++AF  ++  
Sbjct: 238 ITVESFLASGELVEVLEAYRPLPRPVSVLYPSRSHLAPQVQAFVEWLRA 286


>gi|320181513|gb|EFW56431.1| Putative transcriptional regulator LYSR-type [Shigella boydii ATCC
           9905]
          Length = 303

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 78/284 (27%), Positives = 129/284 (45%), Gaps = 7/284 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
            H+ + +     +   +F  +A                N  ++++++   G+GIA +P  
Sbjct: 180 SHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYVPLM 236

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +++ +     L  ++    +    VY  Y E  K   K++   N
Sbjct: 237 WVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 280


>gi|304398706|ref|ZP_07380577.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304353653|gb|EFM18029.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 298

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 127/296 (42%), Gaps = 4/296 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L+ F  VAR GSFT AA  L ++Q ++S+ I+ LE  + I+L  R  R ++ T
Sbjct: 1   MKRNMNDLQAFITVAREGSFTRAAALLGVTQPALSQTITALENRMEIRLLTRTTRNVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L       + ++E     L     KP+G +RI     +  +LL   L   L  YP
Sbjct: 61  AAGERLILAIGNRFDEIEAELDMLTAMRDKPAGTVRITCGPHILSSLLLPKLTPLLEAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++   ++   +I  D  D  +R+   I    +       + M A AAP Y +    P
Sbjct: 121 DIRLEFDANHGLRNIVADRFDAGVRMGDTIDKDMVAMPITPPLRMAAVAAPDYFRRHAAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  HN I         +  ++     + P+       L  N+   I +  V G G
Sbjct: 181 QVPHDLLHHNCINMRQATAGGLYVWD-FDGEEGPVNVRVNGQLTFNTSAHIAEAAVAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA LP+  V    +   L+R++E    P    Y  YP   +++      R  + LK
Sbjct: 240 IAFLPEQEVAEGLEQGTLIRVLERWCQPFPGYYLYYPSRKQHSPAFNLVREALRLK 295


>gi|295676099|ref|YP_003604623.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295435942|gb|ADG15112.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 335

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 132/299 (44%), Gaps = 9/299 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+ 
Sbjct: 61  ALTEAGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSTILPEFMH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ +D+  D  D A+R+R  P ++++++ R L         AP  L+ 
Sbjct: 121 RYPEVRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTEQMLVGAPSLLQQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL+  +L++    T           +N ++             L     ++I +  +
Sbjct: 181 NAPPLTPADLNRFE--TLDVPTSDGRHVYNLISPDGTRHAHEHEPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G GIA LP+ +         L  +M     P+  +Y  +         ++AF +++  
Sbjct: 239 AGVGIAALPEMMYGAALRAGLLSPVMPGWSFPTPQLYAVFVSRQGMVPAVRAFVDYLVE 297


>gi|163851170|ref|YP_001639213.1| carbonate dehydratase [Methylobacterium extorquens PA1]
 gi|163662775|gb|ABY30142.1| Carbonate dehydratase [Methylobacterium extorquens PA1]
          Length = 310

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 122/297 (41%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + +R+F   A +GSF+ A   L LS S IS +I  LE  +G  L  R  R + LTE 
Sbjct: 2   LSLESVRIFMRAAETGSFSAAGRSLRLSPSVISYRIQTLEEHLGCLLLTRTTRRMNLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++   +E  +  ++     P G L++   + LG+ ++   +  F   +P+ 
Sbjct: 62  GRVFYDRCLDIAASVERAEKSVETQGAAPRGTLKVTAPLTLGRRVVAPLIPAFRERHPEA 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+  +  D A+RL + ++ SS   RK+  I     A+P YL     P S
Sbjct: 122 DVHLRLSDHLLDLVQEAVDVAVRLAQ-MRDSSFTLRKVADIERILCASPGYLAEHSAPES 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L  H  +          E F W L   D  +  P    +  +    + ++ + G GI
Sbjct: 181 PADLIDHACLLLRF---PGSEQFRWSLRDGDEVVTLPVAGPIDADDGDVLTEWALQGQGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L P + V     +  LV ++        T+   YP       + K F        R
Sbjct: 238 VLKPVFEVAPYLADGRLVPVLPGTPPTPVTLGVVYPSRKMLPARAKTFVEMTTEALR 294


>gi|269965396|ref|ZP_06179516.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|269830042|gb|EEZ84271.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 309

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +       E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 72  YDQSIAMVNAAQQAVELSAEDHAEPTGALTVAAPEAFLNSVLQPFVLPFLERYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+     D A +L       +L+ +++   ++   A+P YL     P    EL
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDK-PDENLVLKEISKTNLVLCASPDYLAKHGMPEHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++H+ I   +     +  F      +            VN     +     G GI +  D
Sbjct: 191 EQHDCIYLAENDKDNIWSF---FKEEAFHSIAVSGRYAVNHSQMRLNGVKSGLGIGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++KD      +V ++ D +  S     +   Y +      +L+ F +F+  
Sbjct: 248 FVIKDALEQGEVVEVLPDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFVKE 299


>gi|254227300|ref|ZP_04920732.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262396433|ref|YP_003288286.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151939912|gb|EDN58738.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262340027|gb|ACY53821.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 307

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G 
Sbjct: 4   LNDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I
Sbjct: 64  LFLDKTTQALATLQEGLEQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+     D AIR  +P   S+L+   L  +      A+P Y+    E  S 
Sbjct: 124 KLELSDSLTDMYTKPVDIAIRYGEP-ADSNLVVLALCGSNERILCASPEYVATHPELTSP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L +HN + +        +   W  T D    +  +S  L  N      +  + G GIA
Sbjct: 183 ADLTQHNCLCYMVADSVYNK---WTLTRDGEKEQIVVSGNLMSNDSDLPHRLAIKGKGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 +  +     LVR++ +       +Y    +    T  ++ FR+FI  K
Sbjct: 240 NKSLMDISRDLIEGRLVRVLPEWDCGPVPLYMVCADRRLLTPTIRTFRDFIQQK 293


>gi|298717563|ref|YP_003730205.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361752|gb|ADI78533.1| Uncharacterized HTH-type transcriptional regulator yhjC [Pantoea
           vagans C9-1]
          Length = 301

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 8/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      ++ F  VA +GSF+ AA Q  + QS++S+QI+ LE  +G+ L +R  R + LT
Sbjct: 1   MQNKLTAIQTFIRVAEAGSFSAAARQNGMKQSAVSQQIAALEEVLGVVLLHRTTRKMALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            QG    +   +V   +E  + +L+  S    G+L +     +GQ  L  +L  F   +P
Sbjct: 61  AQGLHYLQQVRQVLGAMEELEQQLRPGSQPLHGRLHVQLPTGIGQR-LMPHLIAFQQAHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + L+++  D+  +  D AIRL +    + L  R L T+     A+P ++      
Sbjct: 120 ALRLNIALEDRLSDLVAEGVDVAIRLSES-PPAMLAARSLATVETVLVASPEWIARNGTL 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +H  I F  +          L +    I  P  S  + N+  ++MQ    G G
Sbjct: 179 QTPDDLMRHPHIRFSGIATDAPLQ---LVSESMRISVPVESVFRSNNSDALMQALEAGLG 235

Query: 241 IA---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           I     LP      +  LVR++ D   P   +Y  +P+A     K++   
Sbjct: 236 IGGLQTLPGADALASGRLVRVLPDWRLPDRYLYAVFPDARFIPDKVRKLV 285


>gi|167993151|ref|ZP_02574246.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168242652|ref|ZP_02667584.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194450263|ref|YP_002046870.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194408567|gb|ACF68786.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205328753|gb|EDZ15517.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205337955|gb|EDZ24719.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|312913930|dbj|BAJ37904.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225588|gb|EFX50642.1| putative LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 303

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVIIPLLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARNPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTSNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|330969985|gb|EGH70051.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 294

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 11/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  +ISR+++ LE ++G++L +R  R  +LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSASLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         + H  ET +  L+  +   SG LR+      GQ ++   L   +   P +
Sbjct: 61  GEVFLPHAKTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQDNPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL    +P  
Sbjct: 121 SIDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCASPDYLARHGQPSV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H  IT   +                P+          NS  ++   C  G G+A
Sbjct: 180 LDELRQHPCITLHAMPYWP------FIREGEPVAIRAQGAFSANSVEAVRTACKQGLGLA 233

Query: 243 LLPDYIVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +L  + V+      +L +I  EDVI    +V    P   +   +++ F + +  + 
Sbjct: 234 MLTYWDVQQEIREGSLQQINFEDVIPEQLSVTAVLPTRQRVPHRVRLFVDRLEAEL 289


>gi|268590611|ref|ZP_06124832.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291314003|gb|EFE54456.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 299

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +  K+  F  V  SGSFT AA+ L LS+S +S  I  LE ++ + L  R+ R + LT
Sbjct: 1   MQRNLKKIISFLQVVDSGSFTKAADILGLSRSMVSVDIKQLEAQLNVSLLTRNTRNIALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     + ++++    + Q      +G LR ++T + GQ  +   L EF  LYP
Sbjct: 61  EVGKHFYDDFKRIQNQIDEAFEKSQNLGTNIAGLLRFSSTSEFGQRFILPLLPEFCRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q   ++   D+  +  D +IRL   +++SSL  +KL    ++  + P +LK     
Sbjct: 121 KLRLQYSFNSSLDDLITEKLDLSIRLGN-LKNSSLKMKKLGEYEIYLVSTPEFLKKY-PI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L     I    L  +  + F   +  ++       +  + NS   I    +   G
Sbjct: 179 KQLTDLANVPWINHALLNWQDPQYFLQNSKNEKYYLPLIKNQYESNSAAVIHHMVLASLG 238

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA+ P ++V D+     LV ++ +   P   +   YP       K +AF +F+  K 
Sbjct: 239 IAICPAWMVDDDLQHERLVHVLPEYRLPKQNIQLLYPNTFVLPAKTRAFIDFLVDKL 295


>gi|134290919|ref|YP_001114688.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134108|gb|ABO58433.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 313

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 131/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   ++  + E  ++ VKPSG+L +  T   GQ  L   +  +   YP 
Sbjct: 61  AGQRYLDRCQRILGYIDEAEAEAADAQVKPSGRLHVHATTSFGQAYLVPAVVRYRQRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S LI ++L  +H    AAP YLK    P
Sbjct: 121 VAVELTLSQHIPDIIDEGYDVSLQLSTTELPDSGLISQRLGDVHSVLCAAPAYLKEHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L+ H  +     I    + ++      R   E   S  QVN   ++      G G
Sbjct: 181 RTVRDLESHACLQIVTPI-FPRDRWHLDGPDGRETFELPTSDFQVNIAEALGAALRAGLG 239

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP         +  LVR++ +      TVY  Y        K++ F  F+  
Sbjct: 240 IGSLPMSTAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVEFLRE 294


>gi|325529857|gb|EGD06698.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 303

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 132/291 (45%), Gaps = 5/291 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA SG+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G +  
Sbjct: 11  LHVFMSVATSGNFTRAAAALGLTPAAVSLAIGQLESELNVKLFNRSTRGVSLTEAGQRYL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R T   Y ++   + EL++   +P G LR+         ++   L  F   YP +++++ 
Sbjct: 71  RQTEAAYRQIVQARDELKDVRGEPGGLLRVTALPLARTLVIAPILASFHQRYPKVRLEIR 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +N+ +DI+ D  D  IRL   +Q   +  R    +     A+P Y+     P SI EL+
Sbjct: 131 YENELVDIAKDGFDAGIRLADRLQPGMIGVRIAPELTCALVASPDYVARHGAPTSIAELE 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI--ALLP 245
           +H  + F       +  +  L    R I          N   +++     G GI  A + 
Sbjct: 191 RHACVRFRFSESGRLHKW-LLRDGRREIDLDPEGVFVTNDADAVIDAARAGVGIAFAFMR 249

Query: 246 DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + I +D  +  LV ++         ++  Y        KL+AF   +  +A
Sbjct: 250 ERIERDLRDGTLVEVLPGACRALPPMWLYYVNRKHVPAKLRAFIEVLRERA 300


>gi|254560865|ref|YP_003067960.1| LysRl family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254268143|emb|CAX24027.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           DM4]
          Length = 310

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 122/297 (41%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + +R+F   A +GSF+ A   L LS S IS +I  LE  +G  L  R  R + LTE 
Sbjct: 2   LSLESVRIFMRAAETGSFSAAGRSLRLSPSVISYRIQTLEEHLGCLLLTRTTRRMNLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++   +E  +  ++     P G L++   + LG+ ++   +  F   +P+ 
Sbjct: 62  GRVFYDRCLDIAASVERAEKSVETQGAAPRGTLKVTAPLTLGRRVVAPLIPAFRERHPEA 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+  +  D A+RL + ++ S+   RK+  I     A+P YL     P S
Sbjct: 122 DVHLRLSDHLLDLVQEAVDVAVRLAQ-MRDSTFTLRKVADIERILCASPGYLAEHPAPES 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L  H  +          E F W L   D  +  P    +  +    + ++ + G GI
Sbjct: 181 PADLIDHACLLLRF---PGSEQFRWSLRDGDEVVTLPVAGPIDADDGDVLTEWALQGQGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L P + V     +  LV ++        T+   YP       + K F        R
Sbjct: 238 VLKPVFEVAPYLADGRLVPVLPGTPPTPVTLGVVYPSRKMLPARAKTFVEMTTEALR 294


>gi|190574983|ref|YP_001972828.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|254521569|ref|ZP_05133624.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
 gi|190012905|emb|CAQ46537.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|219719160|gb|EED37685.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
          Length = 330

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 132/294 (44%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R +  + L Q  L   L +FL  YP ++
Sbjct: 63  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGVVRASVPVSLAQMQLPKLLPKFLEQYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +DI  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 123 LQLNISNRRVDIINEGYDVALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 182

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +EL +H  ++   D   +  E       V R   +PR++      +  +      G GI
Sbjct: 183 PEELTQHVTLSISEDEARQRWELHGPEGEVRRVDLQPRVAGF---DFPLLQSMVKDGFGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP+ +  D   N  L  ++ D   P    +  +         ++ F +F+  
Sbjct: 240 TMLPETVCADAVRNGELEVVLPDWSLPQGVCHAVFASRRGLLPAVRVFIDFLAE 293


>gi|206560896|ref|YP_002231661.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198036938|emb|CAR52847.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 297

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 138/294 (46%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  +R+F +VAR  S   AA +L ++  ++S++++ LE  +G++L +R  R LTLT +G
Sbjct: 3   EFSDIRLFTLVARHRSLAAAARELGVTPPAVSKRLAHLEKRLGVRLTHRTTRRLTLTPEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     S +  +L+  +  L     +P+G LR+  +   G+  +   +  F+  YP I+
Sbjct: 63  ERYLAEGSRLLGELQELEQVLIRGHAEPAGLLRVNASYGFGRVRVAPAISAFVARYPAIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL L ++ +++     D  IR   P  S+ +  R L   H    A+P Y+     P   
Sbjct: 123 VQLQLTDQPLNLREHGYDIGIRFGDP-PSTRINARLLQRNHRLVCASPAYVARNGRPAVP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  +   +          W     +     ++ S L  N   +++++ + G GIA
Sbjct: 182 HDLVRHACLIVRENDAAYG---AWHFRRGKSTETVKVDSVLSSNDGNAVLRWTLDGHGIA 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKN-TGKLKAFRNFIFL 292
           +   + +        L+ ++ D   P+  +Y  Y E  +  + K++AF +FI  
Sbjct: 239 IRSAWEIAPYLARGELIPLLGDWKLPNADIYATYLERSEVSSAKVRAFVDFIAE 292


>gi|323978019|gb|EGB73105.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
          Length = 307

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFASVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQYGTPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLVIKERDHPFGIW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|197295020|ref|YP_002153561.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195944499|emb|CAR57101.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 302

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 132/293 (45%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L  F  VAR  +FT AA QL +SQS++SR +  LE  +GI L  R  R ++ TE G
Sbjct: 3   DFNDLAAFMTVARERNFTRAAAQLGVSQSALSRTVRALEGRMGIPLLTRTTRSVSPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  + ++E     L+  + +P+G +RI  T       +   L+  L  YP ++
Sbjct: 63  QRLLESIAPRFQEIEVELESLRAMTDQPAGNVRITATDYAANEYVWPRLQPLLRRYPALK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ D    D+     D  IRL   +    + QR    + M    +P YL +     + 
Sbjct: 123 VELVNDYGLTDLVAGRYDIGIRLGDQVAKDMIAQRIAPDMTMSIIGSPDYLASRPATKTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L +HN I     +P      +W  +  R   + R+   L  N+   ++   + G G+A
Sbjct: 183 QDLTQHNCINL--RLPTRNALLSWELSKGRRELQVRVEGQLTFNNVYQMVDAALAGFGLA 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +P  +V    +   L  ++ED        +  YP   K++  ++   + +  
Sbjct: 241 YVPKDLVAHHVEAGRLGWVLEDWFPTFVGHHVYYPSRRKSSRAVELVVDALRA 293


>gi|153832288|ref|ZP_01984955.1| transcriptional regulator [Vibrio harveyi HY01]
 gi|148871599|gb|EDL70454.1| transcriptional regulator [Vibrio harveyi HY01]
          Length = 297

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + VF  +   GS + AAE L LS++ ++R +S LE  +  +L +R  R L+LT 
Sbjct: 1   MDRLEAMNVFVTIVERGSLSAAAEHLDLSRTKVTRYLSELEKWMDTRLLHRTTRSLSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +   +  E+    ++      ++ V   G+LRI  +  +  + L   +  F+  +PD
Sbjct: 61  AGKETLEIARELLALEDSLSGIRNQNRVNLKGQLRITASYSIVSSFLIDAITSFVEQWPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I ++  ++ +++     D AIR+   + + +++ ++L        A+P Y++    PL
Sbjct: 121 VAIDIVSTDETVNLVESRIDLAIRITNALPA-NVVAKQLGECRSVICASPKYIEQKGAPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           + Q+L  HN ++F            W+ +   P G+  +S    +  N+   ++   + G
Sbjct: 180 NAQDLGHHNCLSFSYFGRS-----EWIFS--GPNGDESVSIKGNISANTPEVLLAAALNG 232

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FL 292
           +GI+L P   VKD      L++++ +    +  V+  Y    + T  L+AF + +     
Sbjct: 233 NGISLQPFPTVKDLITEGKLIQLLPEWHPKTLGVHAIYGTRKQVTPLLRAFIDHLSTSMS 292

Query: 293 KARDW 297
           +++ W
Sbjct: 293 ESKRW 297


>gi|312959076|ref|ZP_07773595.1| transcriptional regulator [Pseudomonas fluorescens WH6]
 gi|311286846|gb|EFQ65408.1| transcriptional regulator [Pseudomonas fluorescens WH6]
          Length = 322

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 132/292 (45%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVADAGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ T   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILAYVEAAEAEASDAHARPAGQLKVHTMTGIGQHFVIDAIARYRRTHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L N+  D+  +  D +I L   +  S  + ++L   +  A A+P Y+K      
Sbjct: 121 VTFDLTLANRVPDLLDEGYDVSIVLASELPDSGFVSQRLGITYSIACASPDYVKAKGCAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  +     + + ++ + +     +       S   VNS  ++      G G+
Sbjct: 181 RPHDLLNHACLRLVSPVVQ-LDKWTFNGPEGQESVAINTSPFLVNSADAMKTAITSGMGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LLP Y   +   N  LVR+M +  +    +Y  YP       K+K +  ++
Sbjct: 240 GLLPVYAAIEGLRNGTLVRVMPNYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|295691115|ref|YP_003594808.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295433018|gb|ADG12190.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 304

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 131/298 (43%), Gaps = 9/298 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            +L VF    +SGSF+ A  +L LS S++SR I  +E  +G++L  R  R LTLT +G  
Sbjct: 11  RELEVFVAAIQSGSFSAAGRKLGLSPSAVSRTIYRIEARLGVRLILRTTRVLTLTAEGQT 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   L+ T+ ++ +    P G+LR++  +  G+  +   L  F  LYP I + 
Sbjct: 71  YLGAARRILADLDDTERQIADQGA-PRGRLRVSAALSHGRLCIVPLLGRFAQLYPHILVD 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +   D++   AD AIR    +  S L  R++        A+P YL     P   ++
Sbjct: 130 ISLTDAIADVAGGQADVAIRFG-ILPDSPLTARRIGETGRTIVASPDYLARHGTPQVPED 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F     + +  F       R         ++ N+  ++ Q  + G GI  + 
Sbjct: 189 LHDHNCLNFNFRRAEPVWPFR---KDGRDYALTVNGSIEANNGETLAQLAIAGVGITRVG 245

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           ++ V ++     LV +++         ++  +        +++ F +++  +  + + 
Sbjct: 246 NFSVAEDLAAGRLVPVLDAFNPGDVEQIHAVFVGGANMPARVRVFVDYVASRLAEGRL 303


>gi|238764597|ref|ZP_04625543.1| HTH-type transcriptional activator aaeR [Yersinia kristensenii ATCC
           33638]
 gi|238697187|gb|EEP89958.1| HTH-type transcriptional activator aaeR [Yersinia kristensenii ATCC
           33638]
          Length = 297

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 128/288 (44%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LETE+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVECGSFTGAARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGRIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + + L+
Sbjct: 61  QGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLTEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P    ++ 
Sbjct: 121 TGIPAPDLITDGLDVVIRVGA-LQDSGLFSRRLGSMPMVVCAAKSYLSQHGTPEKPSDMT 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
             + + +         +F  +A                N   +++++   G+GIA  P  
Sbjct: 180 HFSWLEYSVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLKAGAGIAYAPLM 236

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 237 WVIEEIKRGEVEVLFKKYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 284


>gi|259416988|ref|ZP_05740908.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259348427|gb|EEW60204.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 293

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 135/297 (45%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L++F ++        A  ++ LS ++++ +++ LE   G +L  R  R ++LT++
Sbjct: 1   MLIENLKLFLLIVEKAGLAAAGREVGLSPATVTERLAALEAHYGARLLTRTTRSISLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +  + E T+  ++    K SG + ++   DLG+  L   L +F+  +P+I
Sbjct: 61  GRELVTGARRILAETEETEARIKLGVEKISGMIHMSAPSDLGRTQLVPLLDQFMSEHPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  ID+     D A+R  + +  S++  RKL        A+P YLK    P+ 
Sbjct: 121 AIDLTLSDGIIDLVGQGIDLALRFGE-LSDSTMKSRKLGANRRIVCASPDYLKRNGTPMH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             +L  HN +           D +W   +D  +   R+   ++ N    I ++C+ G GI
Sbjct: 180 PDDLSHHNCLIMRF---GANTDRDWAFVIDGQMKTKRVLGNRIANDGGLIRRWCLGGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A   ++ ++      +LV ++E        ++  YP       +++A   F+  + +
Sbjct: 237 ARKSEWDIRVDLATGDLVEVLEAFSPEPNALHMVYPAGAVQPRRVRALMEFLVARLQ 293


>gi|190890011|ref|YP_001976553.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695290|gb|ACE89375.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 301

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 131/288 (45%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R L+LTE G+ 
Sbjct: 5   EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKALGGTLLHRTTRKLSLTEDGAV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++E    ++ E     SG +RIA  +  G+  L   L  FL  +P+I + 
Sbjct: 65  FLERAGRIVREIEEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLAEHPEIHLT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D++ +D + D  D  IR   P+  S L+  KL        A+P YL     P S+ +
Sbjct: 125 LDIDDRRVDAASDGYDAIIRNG-PLADSRLVAWKLAPSRRLLCASPDYLARQGMPSSLAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H  I + +   + + D+    T +  I       L +N+   +    + G GIALLP
Sbjct: 184 LNSHRGIFYTN---RGVADWR-FQTPEGAILVRAKPALGINNGDMLRDAAIAGLGIALLP 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +I         L  I       +  +Y  +P     + KL+A  + +
Sbjct: 240 AFIAGPAIREGLLAEIDVGHRPEAEFIYMAHPAGRNPSAKLRAIADHL 287


>gi|150378372|ref|YP_001314966.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032919|gb|ABR65033.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 299

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 130/288 (45%), Gaps = 8/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR+F  V+   SFT AA+++ +S +  S+ +  LE  +G +L  R +R ++LTE G    
Sbjct: 7   LRLFCTVSELKSFTAAADRIGISPAMASKHVMRLENRLGTRLLNRTSRHVSLTETGWLYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +  +   ++ P G L+++  +    N     L E+   YPD+ + + 
Sbjct: 67  NQAKQLLEGLDEVEAAIGNVTMAPRGTLKLSAPVCAASNGFVSRLAEYNRRYPDVCLDVD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ--SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  + +++  +  D A+R           L+ R L  I  H  A+P YL+    P  + +
Sbjct: 127 LSGRMVNLVDEGFDLALRRATSPDRLDLGLVARPLADIEFHLMASPEYLERAGRPKGLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H L+ F       + D   L   +R       + +  ++   +    + G G+  LP
Sbjct: 187 LNGHALLRFSGA---NLSDIMELKGANRQSKITFRTVMSSDNETILQLAALRGMGLVYLP 243

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ + +     L  ++ + I  S T++  YP     + K++ F +F+
Sbjct: 244 KWMTEQDIAAGRLETVLPNSIAFSITLFAVYPTRKHLSAKVRTFIDFM 291


>gi|163800143|ref|ZP_02194044.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
 gi|159175586|gb|EDP60380.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
          Length = 309

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLVITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +       E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 72  YDQSIAMVNAAQQAVELSAEDHTEPTGALTVAAPEAFLNSVLQPFVLPFLERYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+     D A +L       +L+ +++   ++   A+P YL     P    EL
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDK-PDENLVLKEISKTNLVLCASPSYLTKHGMPKHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + H+ I   +     +  F      +            VN     +     G GI +  D
Sbjct: 191 EHHDCIYLAENDKDNIWSF---FKEEAFHSIAVSGRYAVNHSQMRLNGVKAGLGIGIFHD 247

Query: 247 YIVKDNP---NLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++KD      +V ++ D +  S     +   YP+      +L+ F +F+  
Sbjct: 248 FVIKDALEQEEVVEVLPDWMIKSNYHGAIAMQYPQTKYMPARLRVFIDFVKE 299


>gi|238787282|ref|ZP_04631081.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           frederiksenii ATCC 33641]
 gi|238724544|gb|EEQ16185.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           frederiksenii ATCC 33641]
          Length = 298

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AA+ L +S++ ++R ++ +E   G +L +R  R L+LT  G     
Sbjct: 8   EVFVAIVERGSMIAAADALEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTHAGEATLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +   +   +  G LRI+ +  LGQ+ L   +  +L  YP + + L +
Sbjct: 68  RCRRMLEFAQDMDLVEGQEDGELRGLLRISCSQSLGQSALAIAVAGYLHRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L T H    AAP YL     P    +L  
Sbjct: 128 NNRTVNLVEERIDLALRITNDL-DPNLIARPLATCHSVVCAAPSYLSAKGTPKDPHDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                            L  N  + ++   + G+GI L P Y 
Sbjct: 187 HNCLTYSYFGKSLWH----FDQQGVKSSVAVGGNLSANESVVLLSGALEGAGITLQPSYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  LV+++ D    S  +Y  Y    +    L+   +++  
Sbjct: 243 AAPYIASGQLVKLLPDYQPQSMGIYGIYTSRRQMPATLRTMLDYLVE 289


>gi|109898963|ref|YP_662218.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109701244|gb|ABG41164.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 301

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 133/301 (44%), Gaps = 11/301 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  ++ +  F  VA +  F+ AA +L ++ S ISR+++ LE E+G+ L  R  R + LT
Sbjct: 8   MNISFNGIIEFVAVAETHGFSAAARKLGVNVSHISRKVAALEKELGVSLLARSTRTVRLT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G        E+ + L+     + +  V+ SG L+++   +  +  +   L EF  L+P
Sbjct: 68  DAGQAYFARCQELVYGLQEANETVLDKQVELSGVLKVSAAGEFAEQHIAPLLIEFGQLHP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I++  +++ ++   D  D +IR   P++ SSLI RKL    + A A+  YL+    P
Sbjct: 128 KLTIEMDFNSQMVNFVDDAFDFSIRYG-PMKDSSLIARKLTNRSLVAAASKRYLEVNGTP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  +   +          +     +P+     +  + NS  S++  C  G G
Sbjct: 187 AHPNELTSHQCLMTNNSTW-------FFDNQGKPLEVKLDARWRSNSVRSVVLACERGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA LP     D     ++V I+          +  Y        K +   NF+  K   W
Sbjct: 240 IAYLPRSSFGDALKGGSVVPILAPFWNREIATWIVYANRNFLPAKARLAINFLLEKFEHW 299

Query: 298 K 298
           +
Sbjct: 300 Q 300


>gi|254505501|ref|ZP_05117648.1| transcriptional regulator [Vibrio parahaemolyticus 16]
 gi|219551618|gb|EED28596.1| transcriptional regulator [Vibrio parahaemolyticus 16]
          Length = 307

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 140/300 (46%), Gaps = 14/300 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L++S+S +SRQIS LE ++G+ L  R  R L LT+
Sbjct: 4   QINLADIRSFVLIAQLGNFTKAAEALNVSRSHVSRQISQLEKQMGVTLLIRTTRTLKLTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G   ++  +     ++       E +    G +++      LG+ L+   + EF++ +P
Sbjct: 64  AGRLFYQQCAHALGTIDQALSAATEDTETLQGMIKVNAVGGYLGEELVADLISEFMISHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L   +  +D+  D  D A R+ + ++ +  + RKL+T+ M   A+P YL +   P
Sbjct: 124 NVTVSLEFSSHRVDLIEDEFDIAFRMGQ-LEDAGFVARKLMTVEMGTLASPSYLASSPPP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  +T G +     E  +    +D  I       L+  +   +++  +   G
Sbjct: 183 EHPNQLRHHQCLT-GSVTRWSFEHPSTKQVMDVNIN----GHLKCKNGRVLVKGALKDHG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  +P    ++      L  + +D   PS      YP+      +LK F +F    AR++
Sbjct: 238 IIRVPLIYCQEELKQGALKEVFQDWRVPSVEFSMIYPKDRYQPKRLKLFISF----AREY 293


>gi|167550237|ref|ZP_02343994.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205324785|gb|EDZ12624.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 314

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LTDSRYRAALISRFTILPVAAPQWLARHPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTNNHGQRSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    +   L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALEEGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|293602369|ref|ZP_06684815.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292819131|gb|EFF78166.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 296

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 133/300 (44%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  VG++L  R  R + LT
Sbjct: 1   MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERSVGMRLLNRSTRKIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +  +      +L + +V+P G+LRI+    L Q  L   + EF   +P
Sbjct: 61  EAGAIYFERCRHIVEEARIAHDQLLDMAVQPKGRLRISLPTSLAQLFLPAVISEFREQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+    L  + ID   +  D  +R  +    SSLI RK+V +    YA+P YL    EP
Sbjct: 121 DIECDFDLSMRPIDPISNPFDLILRFGQQ-PDSSLISRKIVLMAHQLYASPDYLARHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  +       +    F  L + D+         L  N+   + +    G G
Sbjct: 180 RVPADLAHHECL---RPTMREESSFWMLHSGDKVERVQVSGRLSANNVGMLGRLAGQGLG 236

Query: 241 IALLPDYIVKD----NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L  +   +       LVR++ D       ++   P  +    K KAF +FI  +  D
Sbjct: 237 ITPLLVFDAMERAIKQAGLVRVLPDWSLTPLPLFALLPSRM-LPAKTKAFLDFIQPRLSD 295


>gi|239813250|ref|YP_002942160.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239799827|gb|ACS16894.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 298

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 131/297 (44%), Gaps = 9/297 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA  GSF+ AA+ L ++ S+ SRQ+  LE E+G +L  R  R L LTE G +  
Sbjct: 1   MVTFLRVAELGSFSAAADLLGMTPSAASRQVKRLEKEIGAQLIQRTTRQLRLTEPGVEAL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    +      Q  S KPSG +RI+      + +L  ++ +FL  +P++ +QLI
Sbjct: 61  ARCRELVLAAQGAMDVAQRFSKKPSGLVRISAPKAFARRVLHPHILDFLQRHPEVDVQLI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++DID   +  D  +RL        L+ R+L+ +     A+P YL         ++L 
Sbjct: 121 VEDRDIDPIREGVDLVVRLTTK-PPEGLVARQLMPVAHILCASPRYLAQGAAIAHPRDLL 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ ++ G+   +    + +    +             N     ++  + G G+A +P +
Sbjct: 180 AHSCLSLGE--HERDNHWCFRKGDEDEAEVVVRGRYVSNHSEVRLEAALAGLGVACVPAF 237

Query: 248 IVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + +    + +++R++ D           Y  YP +     K +   + +       +
Sbjct: 238 MAQQALKDGSVMRVLADWEFQGNYHGHAYILYPPSRFTVPKCRVLIDHLLDALATQR 294


>gi|188580335|ref|YP_001923780.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179343833|gb|ACB79245.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 310

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 122/297 (41%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + +R+F   A +GSF+ A   L LS S IS +I  LE  +G  L  R  R + LTE 
Sbjct: 2   LSLESIRIFMRAAETGSFSAAGRSLRLSPSVISYRIQTLEQHLGCLLLTRTTRRMNLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++   +E  +  ++     P G L++   + LG+ ++   +  F   +P+ 
Sbjct: 62  GRVFYDRCLDIAASVERAEKSVETEGAAPRGTLKVTAPLTLGRRVVAPLIPAFRERHPEA 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+  +  D A+RL + ++ SS   RK+  I     A+P YL     P S
Sbjct: 122 DVHLRLSDHLLDLVQEAVDVAVRLAQ-MRDSSFTLRKIADIERILCASPAYLAEHPAPES 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H  +          E F W +   D  +  P    +  +    + ++ + G GI
Sbjct: 181 PAELIDHACLLLRF---PGSEQFRWSVRDGDEVVTLPVSGPIDADDGDVLTEWALQGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L P + V     +  LV ++        T+   YP       + K F        R
Sbjct: 238 VLKPVFEVAPHLADGRLVPVLPGTPPTPVTLGVVYPSRKMLPSRAKTFIEMTTEALR 294


>gi|6580781|gb|AAF18287.1| transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 302

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 132/289 (45%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+ F +VA+  SFT AA +L +SQS++S  +  LE  + + L  R  R +T T  G
Sbjct: 5   NLNDLQSFLIVAQEKSFTKAAAKLGVSQSALSHTVRQLEARLNLTLLIRTTRSVTPTSAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +  +  + ++E     + E   +P+G +RI +T D    +++  +K FL  YP ++
Sbjct: 65  EYLIQNMAPHFDQIEKQLASIGELRNQPTGTIRITSTDDALAYVIRPKIKGFLQKYPGVK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+ D K +DI  +  D AIRL + +            I      +P Y +N   P + 
Sbjct: 125 IELVSDLKLVDIFTEKFDAAIRLGENVTKEMASVPLTPDIRFTVVGSPEYFQNKPIPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  IT    +P     + W      R I       L  NS   I   C+ G G+A
Sbjct: 185 QDLLNHQCITI--RLPTHGGIYAWEFEKAGRDIKIRVDGPLVFNSIFPIRNACLDGLGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +PD + K   +   L+ ++ED        + C+P   +N   L  F  
Sbjct: 243 HMPDIMAKLYIEEGRLIPVLEDWCPYWSGYHLCFPHHYENIRPLSLFLE 291


>gi|209551865|ref|YP_002283782.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537621|gb|ACI57556.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 298

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 123/301 (40%), Gaps = 10/301 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + +F  A E+L +++S++S+ +  LE  +G+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G            ++      ++E   +PSG LRI  +      L    L  F+   P
Sbjct: 61  EAGEVFFEAVGPSVRRVRDAMQTVREMQARPSGLLRITVSSIAESFLSGTLLAGFMQACP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + + + DI     D  +RL + I+   +          +A A+P YL+    P
Sbjct: 121 EIKLDITITDDEFDIVEAGFDAGVRLGEVIEQDMVAISVSERQRQYAVASPAYLERRGRP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  I +          +      DR         +  N    +++    G+G
Sbjct: 181 RHPGELQGHACIGWRPRPDTAPYRWE-FTENDRDFDVSVDPAVTTNDMGMMIRMACAGAG 239

Query: 241 IALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I      +V+      +   LV ++ED   P    Y  YP   +   KL+A  + I   A
Sbjct: 240 ITFG---MVETFQSYVERGELVPLLEDFCPPFPGFYLYYPRRQRQPLKLRALVDHIRTSA 296

Query: 295 R 295
           R
Sbjct: 297 R 297


>gi|229588511|ref|YP_002870630.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360377|emb|CAY47234.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 322

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAEAGSFTAAAVQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ T   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILAYVEEAEAEASDAHARPAGQLKVHTMTGIGQHFVIDAIARYRRTHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L N+  D+  +  D +I L   +  S  + ++L   +  A A+P Y+K      
Sbjct: 121 VTFDLTLANRVPDLLDEGYDVSIVLASELPDSGFVSQRLGITYSIACASPDYVKAKGCAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  +     + + ++ + +     +       S   VNS  ++      G GI
Sbjct: 181 RPHDLLNHACLRLVSPVIQ-LDKWTFNGPEGQESVAINTSPFLVNSADAMKTAITSGMGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LLP Y   +   N  LVR+M +  +    +Y  YP       K+K +  ++
Sbjct: 240 GLLPVYAAIEGLRNGTLVRVMPNYRSQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|153950653|ref|YP_001399411.1| DNA-binding transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|152962148|gb|ABS49609.1| transcriptional activator AaeR [Yersinia pseudotuberculosis IP
           31758]
          Length = 303

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 128/291 (43%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA +L  S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKQMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     + L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQQVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKAYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q+S L  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPEKPG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++  ++ + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMANYSWLEYNVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLKAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGEVEILFKHYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|238789797|ref|ZP_04633579.1| HTH-type transcriptional activator aaeR [Yersinia frederiksenii
           ATCC 33641]
 gi|238722156|gb|EEQ13814.1| HTH-type transcriptional activator aaeR [Yersinia frederiksenii
           ATCC 33641]
          Length = 303

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LETE+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q S L  R+L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSGLFSRRLGSMPMVVCAAKSYLAQYGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMVNFSWLEYSVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLNAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGEVEVLFKKYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|107026661|ref|YP_624172.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692149|ref|YP_837682.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896035|gb|ABF79199.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650149|gb|ABK10789.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 302

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 122/296 (41%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE    ++L  R  R  T+TE G
Sbjct: 8   DLNDLYYFVKVVEHGGFTQAGRALDVPKSTLSRRIAALEARYDVRLLQRTTRHFTVTETG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + +  +  ++    +P G +R++    L +  +   +  F+ ++P + 
Sbjct: 68  REFYERCLAVLVEADAAREVIERRHAEPRGIVRVSCPTALLEFRVSELVARFMAIHPQVH 127

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAP +L     P  
Sbjct: 128 VHLEATNRRVDLLSEGFDLALRVRFPPLEDSDLVMRVLADSPQRLVAAPQWLDGRTAPSD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     + +G   P     +  +                 +   ++    + G GI 
Sbjct: 188 PAELIGVPSLDWG---PARHHVWQLVGPNGEHAQLRHHPRFVTDDMHALRDAAIHGVGIV 244

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP  +V+D   +  LV ++         V+  +P       +++   +F+    R
Sbjct: 245 QLPCMVVEDDLRDGTLVDVLPGWAPKGGVVHAVFPSRRGLLPRVRLLIDFLAEHIR 300


>gi|15799985|ref|NP_285997.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 EDL933]
 gi|168749126|ref|ZP_02774148.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4113]
 gi|168755828|ref|ZP_02780835.1| putative HTH-type transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761919|ref|ZP_02786926.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4501]
 gi|168769629|ref|ZP_02794636.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4486]
 gi|168775425|ref|ZP_02800432.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4196]
 gi|168782626|ref|ZP_02807633.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4076]
 gi|168788546|ref|ZP_02813553.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC869]
 gi|168799806|ref|ZP_02824813.1| putative HTH-type transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. EC508]
 gi|195937760|ref|ZP_03083142.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809313|ref|ZP_03251650.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4206]
 gi|208815571|ref|ZP_03256750.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4045]
 gi|208823112|ref|ZP_03263430.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4042]
 gi|209399565|ref|YP_002268902.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4115]
 gi|217326004|ref|ZP_03442088.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. TW14588]
 gi|254791439|ref|YP_003076276.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|261255953|ref|ZP_05948486.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12513063|gb|AAG54605.1|AE005205_3 putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|187769091|gb|EDU32935.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4196]
 gi|188016509|gb|EDU54631.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4113]
 gi|188999848|gb|EDU68834.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4076]
 gi|189356957|gb|EDU75376.1| putative HTH-type transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361299|gb|EDU79718.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4486]
 gi|189367656|gb|EDU86072.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4501]
 gi|189371652|gb|EDU90068.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC869]
 gi|189377882|gb|EDU96298.1| putative HTH-type transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. EC508]
 gi|208729114|gb|EDZ78715.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4206]
 gi|208732219|gb|EDZ80907.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4045]
 gi|208737305|gb|EDZ84989.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4042]
 gi|209160965|gb|ACI38398.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. EC4115]
 gi|217322225|gb|EEC30649.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. TW14588]
 gi|254590839|gb|ACT70200.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|320192400|gb|EFW67044.1| Transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC1212]
 gi|326338844|gb|EGD62662.1| Transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. 1125]
 gi|326343452|gb|EGD67216.1| Transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. 1044]
          Length = 294

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDIQ
Sbjct: 66  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVSQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +        +    L   D+ I          +      +   LG G+A 
Sbjct: 186 ADLKAHPCIAYQFADGSVYQWE--LNQDDKKITHQPEGQWAFSDSYMEAEAARLGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  +V D+     L+R+++        ++  YP     +  L+   +
Sbjct: 244 VPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYPH-RNVSPALRMVID 290


>gi|172064841|ref|YP_001815553.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997083|gb|ACB68000.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 345

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 140/291 (48%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSFT AAE L + + ++SR +  LE ++  +LF R  R   LT +G +    
Sbjct: 35  AFVAVASEGSFTKAAELLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGRRFFEN 94

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +   ++     ++ E     P G +RI++ +  G+ ++   L++F   YPDI I L+L
Sbjct: 95  CHQGVAQIVEAMNDMLELRQGPPRGLIRISSAVGFGRKIVAPLLEKFAQAYPDIIIDLLL 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++ ID+  +  D + R  + I+ SS+I R+L+ + M   AAP Y+     P  I +LD+
Sbjct: 155 DDRPIDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVARHGLPQRIDDLDQ 213

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I F     +    F W   VD  + +    S L  N    +++  + G+GIA +  Y
Sbjct: 214 HECINFRFASGRV---FEWEFNVDGRMQKYLPTSRLTFNDADLVLRAVLNGAGIAQMAGY 270

Query: 248 IVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++D+     LV  +   +      Y CY        +++ F +F+  + R
Sbjct: 271 QIRDHLASKELVVALAKHVPEDRGHYICYLSRQHLPTRIRIFVDFMTEQIR 321


>gi|254228786|ref|ZP_04922209.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262396496|ref|YP_003288349.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151938733|gb|EDN57568.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262340090|gb|ACY53884.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 309

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +       E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 72  YDQSIAMANAAQQAVELSAEEHAEPTGALTVAAPEAFLNSVLQPFVLPFLERYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+     D A +L       +L+ +++   ++   A+P YL     P    EL
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDK-PDENLVLKEISKTNLVLCASPDYLAKHGMPEHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++H+ I   +     +  F      +            VN     +     G GI +  D
Sbjct: 191 EQHDCIYLAENDKDNIWSF---FKEEAFHSIAVSGRYAVNHSQMRLNGVKSGLGIGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++KD      +V ++ D +  S     +   Y +      +L+ F +F+  
Sbjct: 248 FVIKDALEQGEVVEVLPDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFVKE 299


>gi|330989338|gb|EGH87441.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 294

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 4   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 63

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +  +L  YP   + L++
Sbjct: 64  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSVDLLI 123

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P S QEL  
Sbjct: 124 GNEAVDLVSERIDLAIRITNQL-DPNVIARPLGHCDSVVCASPAYLAMHGTPSSPQELAA 182

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E          P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 183 HNCLTYSYFGKSLWE----FTRQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 238

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+ ++ D    +  ++  Y      +  L+   +F+  
Sbjct: 239 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFLTE 285


>gi|323499888|ref|ZP_08104847.1| LysR family substrate binding transcriptional regulator [Vibrio
           sinaloensis DSM 21326]
 gi|323315129|gb|EGA68181.1| LysR family substrate binding transcriptional regulator [Vibrio
           sinaloensis DSM 21326]
          Length = 303

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 10/293 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +++  +F  VA   SF+ AA++L +S+S +S QI  LE E+   L  R  R + LT
Sbjct: 4   MHKRFERYALFSEVANQLSFSKAADKLGISRSYLSSQIHQLEQELETSLLIRSTRSVRLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G K+      +   +   + EL+ +  + +G LRI          L    +EF  ++P
Sbjct: 64  SAGEKILLKMQAINSSILQLEKELEHTESEVTGMLRITAPTIFSHRFLIDICREFQDIHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+  L +     D++    D AIR        +++ +KL+       A+P YL    EP
Sbjct: 124 QIEFDLNVGYTREDLTKTNFDLAIRATTN-PPENMVAKKLMPYQHICCASPQYLARYGEP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +HN ++   L            + +  I       + +N  L +++  + G G
Sbjct: 183 THPDQLVQHNCLSDPHLTEWA------FFSDNTTIRVKTDGDMFINDNLLLLEAAIQGKG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +PDY+V+   D+  LV+I+        ++Y  YP  L+ + KL AF  F+
Sbjct: 237 IIKMPDYLVRQALDSGALVQILPRYFINQSSIYLIYPPQLRGSTKLAAFTEFM 289


>gi|254255212|ref|ZP_04948528.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124900949|gb|EAY71699.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 393

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 139/291 (47%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSFT AAE+L + + ++SR +  LE ++  +LF R  R   LT +G +    
Sbjct: 83  AFVAVASEGSFTKAAERLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGQRFFEN 142

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                 ++     ++ E     P G LRI + +  G+ ++   L++F   YPDI I L+L
Sbjct: 143 CHPGVAQIVEAMNDMLELRQGPPRGLLRIGSAVGFGRKVVAPLLEKFANAYPDIVIDLLL 202

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++ +D+  +  D + R  + I+ SS+I R+L+ + M   AAP Y+     P S+++L +
Sbjct: 203 DDRPLDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVAAHGLPRSVEDLGR 261

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I F     +  E   W   VD  + +    + L  N    +++  + G+G+A L  Y
Sbjct: 262 HACINFRASNGRVSE---WEFKVDGRVQKYTPTARLTFNDADLVLRAVLDGAGLAQLAGY 318

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V+D      LV  + +        Y CY        +++ F +F+  + R
Sbjct: 319 QVRDPVARGELVVALANHAPDDRGHYICYLSRQHLPTRIRVFVDFMTEQIR 369


>gi|172063541|ref|YP_001811192.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996058|gb|ACB66976.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 301

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 133/292 (45%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +  +S  I  LE +VG+ L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMTSFTRAAESLGIQKGRVSMVIRKLERDVGVALLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++  +++  Q     +  +  G+LR+    +L ++++   L + +  +P+++
Sbjct: 63  RAFYSRARDLLAEVQELQSMFSGNGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  PI   +LI R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRLG-PITDDTLIARPLGKLRMTNAASPSYLARHGIPHTL 181

Query: 184 QELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L    H ++ +   +      + +    D     P  S +QVNS  +     + G G+
Sbjct: 182 DDLRSQGHRMVHYTLTLGARHPGWEY-PNGDGYASLPLPSAMQVNSVQTYHAAGLAGIGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                  +    ++  LV ++ D+                 + +++AF ++I
Sbjct: 241 IQAGYSALAHHIESGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFMDWI 292


>gi|172064262|ref|YP_001811913.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996779|gb|ACB67697.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 295

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 122/286 (42%), Gaps = 12/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F     +GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L LT +G + +
Sbjct: 1   MTCFARAVETGSFSAAGRDLGLGQPNVSRYVAALEDHLQTRLLHRSTRKLALTPEGERYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++ ++   + S   PSG LR+A    L    +   +  FL  YP + + L 
Sbjct: 61  ADIRRILDAVDESESSFRNSVD-PSGLLRVACPTALAHAYVLPQVPVFLERYPRLTLDLQ 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  +  + AIR+   ++ S+L  R++      A A+  YL     P +  +L 
Sbjct: 120 ISDRYVNLVDEGVELAIRIGH-LEDSALRARRIGMYERVAVASKDYLAKRGVPDTPDDLR 178

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ + +  L       F       R    P    L+VNS  ++      G G+   P++
Sbjct: 179 EHDCVVYTLLSSGATWRF-------RDADIPVSGRLRVNSPEAVRAAVTAGLGVGHGPEW 231

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + ++   +  L  I+     P+  V   Y        +   F  FI
Sbjct: 232 LFEEGLKSGRLQLILTGHFAPAVPVQIVYVANRLLPTRAIVFIEFI 277


>gi|329889413|ref|ZP_08267756.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328844714|gb|EGF94278.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 302

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 127/299 (42%), Gaps = 6/299 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V     F  AA  L + +S +SR+I+ LE ++G +L  R +R  ++T+ G
Sbjct: 3   DLNDLYYFVQVVDHHGFAPAARALGMQKSKLSRRIAALEDQLGTRLIQRSSRKFSVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +  + E  Q  +  +  +P G +R+A    L    +   +  F+ LYPD+ 
Sbjct: 63  LAYYQHCLAMLIEAEAAQALIDGARSEPCGTIRVACAPGLLTYQMSSLIVRFMALYPDLD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   ++ +D+  +  D AIR+R+ P++ + L+ RKL        A+P  +     P  
Sbjct: 123 VQLHSTSRRVDVIGEGFDLAIRVREPPLEQTDLVMRKLDESVHRLVASPDLIARMGRPTG 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     + FG      +   +   T            L  +    + +  V G G+A
Sbjct: 183 PADLANWPSLDFGPAHRDHVWALH--HTEGMTASVRHAPRLVTDDLHMLHEGAVHGLGVA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LLP   V  +     LV ++ D     + V+  +P        ++   +F+     + +
Sbjct: 241 LLPTVAVARDLDAGKLVDLLPDWRPKKWIVHAVFPSRRGLLPSVRMLLDFLVAGCAEQQ 299


>gi|300704477|ref|YP_003746080.1| transcriptional regulator (lysr family) [Ralstonia solanacearum
           CFBP2957]
 gi|299072141|emb|CBJ43473.1| transcriptional regulator (LysR family) [Ralstonia solanacearum
           CFBP2957]
          Length = 297

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 139/294 (47%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  +  +     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGAAFLAHARGILAAVDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ ID+  +  D AIR+   ++ S+L  R+L T  +   A+P YLK    P
Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRIG-TLRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H L+ F  + P+ +  +         +    +  L+ +S  ++ Q  + G+G
Sbjct: 180 RTVDDLRHHALLGF--VQPESLNHWPLRGPHGDRLRI--VPTLKASSGETLRQLALQGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
           +  L D++   +    +LV+++ D        ++  Y    +   ++  F +F+
Sbjct: 236 LVCLADFMTAADRRAGDLVQVLPDATVEILQPIHAVYYRNTQLASRIACFLDFL 289


>gi|254671545|emb|CBA09168.1| Transcriptional regulator [Neisseria meningitidis alpha153]
 gi|325128962|gb|EGC51814.1| transcriptional regulator, LysR family [Neisseria meningitidis
           N1568]
 gi|325131016|gb|EGC53743.1| transcriptional regulator, LysR family [Neisseria meningitidis
           OX99.30304]
 gi|325207318|gb|ADZ02770.1| transcriptional regulator, LysR family [Neisseria meningitidis
           NZ-05/33]
          Length = 303

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 138/289 (47%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +       + ++      +  +         ++ ++ L + +    G+ I   P +
Sbjct: 186 GLPAVLPTYTNQQKLDLTR--KSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPLW 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + +     LVR++     P+  +   Y +    + K+++F +F+  K
Sbjct: 244 AAEHDLRCGTLVRLLPGYAVPTDRLNAVYADRAFLSAKVRSFIDFLNEK 292


>gi|257486092|ref|ZP_05640133.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331010436|gb|EGH90492.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 294

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 4   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 63

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +  +L  YP   + L++
Sbjct: 64  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSVDLLI 123

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+       ++I R L        A+P YL     P S QEL  
Sbjct: 124 GNEAVDLVSERIDLAIRITNQ-PDPNVIARPLGHCDSVVCASPAYLAMHGTPSSPQELAA 182

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E          P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 183 HNCLTYSYFGKSLWE----FTRQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 238

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+ ++ D    +  ++  Y      +  L+   +F+  
Sbjct: 239 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFLTE 285


>gi|91223797|ref|ZP_01259061.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91191289|gb|EAS77554.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 292

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 134/293 (45%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V   GSF +AA    +S + + + +S LE  +G +L +R  R  +LTE
Sbjct: 1   MDKLTSMKVFAYVVEHGSFRNAAHHFDISPTMVGKHVSFLEQSLGTQLIHRTTRKQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +   +  +Q    +P+G +++   +  G+ ++   + +FL  +PD
Sbjct: 61  AGRLYYQECHRIIEDITNAENLIQTLINRPTGTVKVNCPVTYGKKVIAPIVADFLAEFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+LDN  ID     AD  IR+ + +  SSL+ RKL   HM   A+P YL+      
Sbjct: 121 LNVELMLDNNLIDPYRSEADVIIRIGE-LVDSSLVARKLGEYHMTYCASPSYLEQHAPIQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H+ + F     +  +  N  +           + L  N+   +    +  SG+
Sbjct: 180 SLDDLAHHHCLGFQYHQGESQQVVNMPSNTFGNSN----TRLTSNNGDVLKFAALKSSGV 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + P  +V+    +  LV I++        ++  Y  + + + K +   +FI 
Sbjct: 236 LMQPKILVEQEIQSGALVEILQQHAPKPKPIHLLY-RSKQLSLKNRTLVDFIL 287


>gi|299530479|ref|ZP_07043899.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298721455|gb|EFI62392.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 300

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 139/299 (46%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  VA + +F+ AA+ LHL+  ++S QIS LE+ +G++LF+R  R + LTE
Sbjct: 1   MDRLRLITTFMNVAEAENFSRAAQSLHLTPQAVSLQISQLESWLGVRLFHRSTRRMALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +         ++  + EL++ +   +G +++A+++ LGQ L+   L +F   YPD
Sbjct: 61  DGRVFYERCRVGLQSIDQGERELRDRASGITGSIKVASSLSLGQLLVAPLLAQFNESYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+L+  N   D      D  + +  P+ + SL+ R++        AAP YL     P 
Sbjct: 121 IRIELVTQNPWPDTVDLGMDIGV-IGGPLLNVSLVARRVGRFTHMLCAAPAYLAAKGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL +H  I         +  + + +   + + EP  S           Q  + G+GI
Sbjct: 180 SPQELLQHCCIGLRHPRTNRIWPWTFQSARRQTMLEPPFS-FITQDPAVQRQLVLQGAGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             L DY  +    +  LV +      P   V+   P+      ++K   +F++ + + +
Sbjct: 239 GQLTDYFARPLIASGALVELPLGYSGPRLDVHVFIPQREHTPRRIKLLNDFLYERLKQF 297


>gi|241766718|ref|ZP_04764555.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241362935|gb|EER58644.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 302

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 126/290 (43%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + V   V  +GSF  AA QL +S   + + I  LE  +G +LF R  R  +LTE G+
Sbjct: 4   LRNMEVMVAVVEAGSFAGAARQLGISAVMVGKHIQQLEAHLGARLFQRSTRRNSLTEVGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H  +  V  ++   +  ++ S   P G LR++    LG + +   + +FL  +  +++
Sbjct: 64  AFHEDSRRVLEQVRWAESAVERSRAVPQGLLRVSAPFTLGTHAIAPLVADFLQRHEHVRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D++ D  D A+R+ + +    L+ R L    M   AAP YL+    P    
Sbjct: 124 DLQLSDSVVDLAGDGFDAAVRIGQVV-DEGLVARPLRPYRMVIAAAPAYLQRHGTPEGAA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ ++      +       L   D     P  + L  N    + Q  + G G+ + 
Sbjct: 183 DLARHHCLSHSVWQRRVEWT---LRDGDETFFWPENARLVCNQGEGLRQAALRGLGLVMQ 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P+ ++ D+     LV +M+  +     V+  Y    +   KL  F   + 
Sbjct: 240 PEVLLADDLARGALVPVMQHCLPLPRPVHLVYAPDRRQLPKLARFVEHVV 289


>gi|182678261|ref|YP_001832407.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634144|gb|ACB94918.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 299

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 137/289 (47%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D +  F  VA +GS + AA +L LS+S +S ++S LE  +G  LF+R  R L+LTE 
Sbjct: 1   MKLDGIMTFVAVAEAGSISEAARRLSLSKSVVSERLSDLERSLGTVLFHRTTRKLSLTED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      + +   +E    +L E     SG LR++  +  G+  L   L  FL  +P I
Sbjct: 61  GAAFFERAARITRDVEEAAADLAERRGTLSGPLRLSAPVTFGRMHLGPALYPFLAQHPRI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L LD++ +D S +  D  +R  + ++ S L+   L +   H  A+P YL     P S
Sbjct: 121 AMTLELDDRRVDASAEGYDAVVRHGR-LEDSRLMAWCLASSRRHLVASPSYLIRHGTPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL++H  I + +   +   D+ ++      I    I  L+VN+   +    V G GIA
Sbjct: 180 LAELEQHRGIFYTN---RGAADWRFMGPEHATIVRGTIG-LRVNNGDMMRDAAVAGLGIA 235

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LLP +IV        L  I          VY  +PE  + + KL+A  +
Sbjct: 236 LLPSFIVGAEVRTAALTVIDVGAEVEPEFVYIAHPEGRRPSAKLRALAD 284


>gi|209551915|ref|YP_002283832.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537671|gb|ACI57606.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 297

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 131/298 (43%), Gaps = 12/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+ + L +F     SG FT AA  L + +S++S++++ LE  +G++L  R +R   LTE 
Sbjct: 4   FNLNDLHLFVQAVDSGGFTAAARHLGIPKSTVSKRVAELEGRLGVRLIQRTSRSFALTEL 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +       + E  +  ++    +P+G +R+  ++   Q  L  +L      YP +
Sbjct: 64  GREFFQHAQASIIEAEMAEGIVRRHLAEPAGSVRLTASVPTAQFTLTEHLPALAARYPKL 123

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ + + ++ +DI  +  D A+R  R P+  S+L+QRKL +      A+P Y++   +P 
Sbjct: 124 RLSVHVTDRFVDIVQEGFDIALRSHRAPLPDSALVQRKLASHPFLILASPEYIRAHGQPR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGS 239
             +EL +H  I         + D  W    D            +  +    +M+    G 
Sbjct: 184 RPEELTQHATIM------TSLTDNQWWLYCDNGDESLVTLQPIMAADEPFVLMEAAAAGL 237

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  LP  + +       LVR++ D    +       P        ++A  +F+  + 
Sbjct: 238 GITCLPTSVCRKALATKRLVRLLPDWTAGNIETTILMPHRRGQLPAVRAVVDFLAERL 295


>gi|325202883|gb|ADY98337.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M01-240149]
          Length = 303

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 140/289 (48%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L     P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLIRNGVPKTPEEVT 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +   +       + ++  +   +  +         ++ ++ L + +    G+ I   P +
Sbjct: 186 RLPAVLPTYTNQQKLDITH--KSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPLW 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            V+ +     LVR++     P+  +   Y +    + K+++F +F+  K
Sbjct: 244 AVEHDLRCGTLVRLLPGYAVPTDRLNAVYADRAFLSAKVRSFIDFLNEK 292


>gi|242240724|ref|YP_002988905.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242132781|gb|ACS87083.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 306

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 131/294 (44%), Gaps = 6/294 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  +  + SF+ AAE + L ++++S+ +  LE  +G +L  R  R + +T+
Sbjct: 1   MDLVQAMRVFVRIVETESFSRAAENMGLPRATVSQVLKRLEVRLGARLLLRTTRQVRMTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   ++  ++E T         +PSG++RI     L + ++   L  F   YPD
Sbjct: 61  EGRLYYQRCVQLLAEIEETDALFSHQRQRPSGRVRIDMPHSLARLVVIPQLPAFYQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L  ++  I++  +  DC +R    I   SL  R+L ++     A+  Y     EP 
Sbjct: 121 ISLALSANDTPINVIREGVDCVLR-AWIIDDDSLAARQLASLPQITCASAEYCARYGEPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S++ L  H ++ +            ++    R +     + + VN   + +  C+ G GI
Sbjct: 180 SLESLSSHRMVGYFSPRMAQGYPLEFMRQGQR-LPYMLPTWIDVNGADAYVAACLAGMGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P Y ++   D+  LV ++  +  P   +Y  YP       +++    ++  
Sbjct: 239 MQAPCYGLRPYLDSGELVTLLPQMPPPDMPLYVMYPPGRFLAPRVRVVIEWLQE 292


>gi|170683778|ref|YP_001742431.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|301020070|ref|ZP_07184200.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|170521496|gb|ACB19674.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
 gi|300398947|gb|EFJ82485.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|323976224|gb|EGB71317.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
          Length = 308

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 143/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 2   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 61

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 62  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 122 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 181 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVVGGNEEFEIEVSGKYISNDDESMIRM 240

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 241 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 300

Query: 292 LK 293
            K
Sbjct: 301 EK 302


>gi|307256964|ref|ZP_07538741.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864539|gb|EFM96445.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 294

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  +FT AA +L +SQS++SR I  LE+ +G++LF R  R L+LT  G
Sbjct: 6   NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L +   + + KL+     L      PSG++RI  +      +L   L +F   YP+IQ
Sbjct: 66  NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D    DI  +  D  +R    +    +  R      M    +P Y      P + 
Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPKTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +       M  ++++   +    + +      N Y SI     LG G+  
Sbjct: 186 SDLAHHQCLNYR-YASGAMYHWDFIVNHEHIKIKTQGQWTFSNDY-SIRDAARLGLGLGY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +   +V+   +   L++++ +        +  YP     +  LK   +
Sbjct: 244 ICKDLVQKELEKGELIQVLSEFSYTFAGFHLYYPH-RNISPALKCVID 290


>gi|260550354|ref|ZP_05824566.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406666|gb|EEX00147.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 299

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 138/297 (46%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EIRLQLIVSNRRVDVINEGIDVALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
             S  EL  H +++  +   + ++    L   D  + + ++S  +   +   + Q     
Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDSQLKKVKVSPTVMGTNLYMLAQLASQN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIALLP+   +D   +  LV+I+ D        +  YP        ++ F +++  
Sbjct: 238 CGIALLPETAAEDFVKSGQLVQILPDWKAAHGIFHAVYPSRRGLLPAVRVFIDYLVE 294


>gi|114561957|ref|YP_749470.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333250|gb|ABI70632.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 299

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 134/300 (44%), Gaps = 14/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA  GSFT AAEQL LS+  +SR I  +E  + ++L +R  R ++LT 
Sbjct: 1   MDKISAIRSFVEVASCGSFTQAAEQLGLSRLQVSRHIKEVEQWLALRLLHRTTRRVSLTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG +       +  ++   +      + +  G +RIA+ I LGQ+ L   ++ F   +P 
Sbjct: 61  QGEEALNYCQRILSEVTAMESRANSHNNELVGSIRIASPIGLGQHKLYDVVEAFCQQHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+L +    +  D  D A+R        SLI R+L+ I     A+P YL      L
Sbjct: 121 VNIQLLLSDNVSQLVNDRVDIALRYTHQ-PDESLIARRLMHIDSVICASPDYLVKHSALL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L +HN +         + D +    +D          LQ N    ++   + G+GI
Sbjct: 180 SANDLLQHNCLCHSSQPRWEIIDESRTCLLDVS------GNLQANDMGVLINAALRGNGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             LP  +     +   L+ ++ ++  P  T++  Y         ++AF +F    A  W+
Sbjct: 234 VCLPTDLANHYLEQGELLEVLPNITAPGKTLWAVYLSRSYQQTVVRAFIDF---TANAWQ 290


>gi|302061339|ref|ZP_07252880.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
          Length = 299

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A  GSFT  AE + + +  ++R I  LE  + ++LF R  R + LT +G + +
Sbjct: 1   MQVFAKLAELGSFTWVAEAMQVGRPHLTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    L  T      +     G+LRI   +   Q      L+ F   +PDI + L 
Sbjct: 61  ERVKSNLADLAETTSMFDRNGSTLRGRLRIDIPVAFSQRSFMETLRGFTRAFPDIDVVLG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  DCA+R+ + +  SSL+ R +    M   AAP YL+    P ++++L 
Sbjct: 121 VTDRTVDLVAEGIDCALRIGE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTPETLEDLK 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  ++F  L  +      W  +++   +  P    + VN   + +Q  + G GI   P 
Sbjct: 180 RHCGVSF--LSGQNNRPLPWHFSLNGEDLPYPAQGAITVNESNAYVQCGLAGFGILQAPG 237

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             V+    +  LV ++E        V   YP       +++AF  ++  
Sbjct: 238 ITVESFLASGELVEVLEAYRPLPRPVSVLYPSRTHLAPQVQAFVEWLRA 286


>gi|150395824|ref|YP_001326291.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027339|gb|ABR59456.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 310

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 134/299 (44%), Gaps = 16/299 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F      GS   AA +L ++ ++ S+ I+ LE  +GI+L  R  R   LTE
Sbjct: 5   MDSLRGIESFVRSVEEGSIAAAARRLGITPAAASQNIARLERALGIRLLVRTTRQSGLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    EV  +LE     +   + +P G+L+IA+++  G++++   +  F   YPD
Sbjct: 65  AGRLYYDRVREVISELEQAAAAVSVLNEEPRGRLKIASSVAFGRHVIAPLVPSFAARYPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L++ ++ ID   +  D ++R  + ++   LI RKL ++ +   AAP Y+     P 
Sbjct: 125 VSIELVVTDRSIDHIGEGIDISVRFAQQLE-PGLITRKLGSVPLVICAAPSYIARRGRPE 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           + ++L  H+ + +          F W    D    EP +   +  N   ++ Q  + G+G
Sbjct: 184 TPEDLRHHDCLIY--RFAGHGRLFRWAFVRDGLRFEPELRPTIVSNDIDTLAQMAIAGAG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVIT--------PSFTVYFCYPEALKNTGKLKAFRN 288
           I  L  +I     +   LV +  +                Y C+ +    T K+++F +
Sbjct: 242 ITRLGTFIANQFFEQGLLVPLFGEAAAEDGTRVDHEPLDFYACFLDRQAETPKVRSFID 300


>gi|42522472|ref|NP_967852.1| LysR family transcriptional regulator [Bdellovibrio bacteriovorus
           HD100]
 gi|39575004|emb|CAE78845.1| transcriptional regulator, LysR family [Bdellovibrio bacteriovorus
           HD100]
          Length = 299

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 118/297 (39%), Gaps = 5/297 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D  D L    +VA   +FT AA +L +S S++S+ I  LE  +G+ L  R  R  +L
Sbjct: 1   MQSDQLDGLIALKLVAERRNFTAAATELGVSASAVSQAIKQLEGRLGVALLSRTTRSTSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +          ++ +    +   + KPSG LR+     +    L   +  F   +
Sbjct: 61  TEAGEQFLAQAGPALDQILSALANVGTYAQKPSGLLRLNMPRMIYPWFLAPIIASFRKKF 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ ++L  ++   D+     D  IRL   +    +  + +  +     A+P YL     
Sbjct: 121 PEVAVELFFEDATSDVIGQGFDAGIRLSDVLAKDMVAMKLVGPVRFVPVASPKYLNKAGR 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++L  H  I    + P+ + D                  L  N  +  ++  + G 
Sbjct: 181 PKHPKDLLGHECIV-SRITPERIYDRWEFENKGTEFQVQVKPALIFNDSVLALRAALDGL 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI    +  V D   +  L  ++    T S   Y  Y +  +   KL+AF + +  +
Sbjct: 240 GIMYAAEEAVSDQLSSGKLELVLNQYSTTSAGFYLYYSKRSQVLPKLRAFIDHLKAE 296


>gi|167718486|ref|ZP_02401722.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 320

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E       P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHG-ATPQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 126 DIVLSDSLVDPLDERSDIAIRSGA-LDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+HN I                   +     P    L +    SI +  V G G+A L
Sbjct: 185 DLDRHNCIGLSGNAKAWP-----FVAEEGQRLLPSAGNLLLGDNESIREAAVSGLGLARL 239

Query: 245 PDYIVK---DNPNLVRIMEDVIT-PSFTVYFCY--PEALKNTGKLKAFRNFIFLKAR 295
             + V    D   LV ++E         +   +  P       ++ A  +F+  + R
Sbjct: 240 ARFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSE-HLPMRVHALLDFLKERIR 295


>gi|293413542|ref|ZP_06656191.1| LysR-like transcriptional regulator [Escherichia coli B185]
 gi|291433600|gb|EFF06573.1| LysR-like transcriptional regulator [Escherichia coli B185]
          Length = 308

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 143/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 2   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 61

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 62  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 122 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 181 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVVGGNEEFEIEVSGKYISNDDESMIRM 240

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 241 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 300

Query: 292 LK 293
            K
Sbjct: 301 EK 302


>gi|114799488|ref|YP_758751.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114739662|gb|ABI77787.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 299

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 123/293 (41%), Gaps = 3/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L VF +VA   +F  AA++L +++S++S+ I  LE  +GI L  R  R ++LT
Sbjct: 1   MIPDLNALSVFALVAEERNFRAAADRLGVTRSAVSQTIRKLEETLGIALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L+   +     L          S +P G+LR+A +      L    L  F   +P
Sbjct: 61  EAGERLYVEAAPALGDLRRAVELTGSLSGRPQGQLRLAVSSIAEHFLGGALLSTFAKAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+ +++ +++ DI  +  D A+RL + I+   +           A  AP YL     P
Sbjct: 121 GIQMDVLVTDEEFDIVAEGYDAAVRLGEVIEQDMIAVPVSAEQRQLAVGAPSYLAEAGAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  + +     +    + +     R         +  N    +++  V G+G
Sbjct: 181 AHPRDLVHHRCVGWRSAPKQAPYRWEFAERDGREFSVSVSPEITTNDMALMIKLAVAGAG 240

Query: 241 IALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I    +   +       LV ++ED        Y  YP       KL+A  + +
Sbjct: 241 ITFGMEESFWPAMKRGELVAVLEDFCPHFSGFYLYYPSRRNLAPKLRALIDHL 293


>gi|78063703|ref|YP_373611.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971588|gb|ABB12967.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 305

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF+ AA  L +S S++S  +  LE  +G++LF R  R + LTE G +L
Sbjct: 8   ELTTFITIAEQRSFSGAARILGVSPSALSHAVRHLEARLGVRLFNRTTRSVALTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     LE    +   +  +PSG++RI+ +    + L++  L  F+  YPDI ++ 
Sbjct: 68  LLRVRPAVVDLEDALNDAATARNRPSGQIRISASEAAARPLIRHVLPAFVARYPDIHVEF 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + D++ IDI     D  IR+ + +    +  +   TI   A A+P YL     P   Q+L
Sbjct: 128 VTDSRLIDIVEHGFDAGIRVHEDVPRDMIAVKFGDTIRFVAVASPDYLSRHALPARPQDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I +             L    + +       + + +   ++   + G GIA + +
Sbjct: 188 VDHRCIRYRFESGALYRWD--LIRKGKRVSVDVDGPMTLGNQGLMIDAALAGIGIAWVTE 245

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             V ++     LVR++ +       +   YP        L+ F        R+W
Sbjct: 246 SRVAEHVAAGRLVRVLPEWSQDFGALCLYYPANRHPPAALRLFV----EAVREW 295


>gi|207723833|ref|YP_002254231.1| hypothetical protein RSMK01181 [Ralstonia solanacearum MolK2]
 gi|206589038|emb|CAQ36000.1| hypothetical protein RSMK01181 [Ralstonia solanacearum MolK2]
          Length = 328

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF     +G F  AAE+L LS+S++ + I+ LET +G++LF+R  R   LTE G  
Sbjct: 2   DGVAVFVEAVEAGGFARAAERLALSRSAVGKSIARLETRLGVRLFHRTTRTQNLTEDGQI 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +L   +  L+    + +G+LR+   +  G+  +   L +F   +P ++++
Sbjct: 62  YYERCLRAIEELRVAESLLESGKQEVAGRLRMTMPVLFGRYCIAPILLDFAREHPKLELE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  D  IR     +++ L  R L T      AAP YLK   EP +I+ 
Sbjct: 122 LSFSDRPVDMIAEGFDLGIRSGALGEATGLCARPLATQPKVLCAAPDYLKAHGEPDTIET 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L  H+++       +    + WL      R       S L+ +         V G GIA 
Sbjct: 182 LATHDVLIH----WRTGHPYPWLLPGADGRLTEVRPASRLRFDDLEVTADAAVAGMGIAW 237

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP ++V+D      LV + E     S   +  +P       +++   + +  K 
Sbjct: 238 LPHWLVRDRIQAGALVALWEKRPAASMDSHAIWPATDYMPLRVRLAIDTLVEKL 291


>gi|254286885|ref|ZP_04961837.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|150423035|gb|EDN14984.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
          Length = 315

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  
Sbjct: 8   QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNMF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +   Q E+++   + +G +R+  +   G   +   L++    YP++ +++
Sbjct: 68  YAQCRELLTIVTNAQSEMEDQRDEVTGLIRLGLSQSFGTLHVLPALEQLRQQYPELNVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++        A+P YL     P     L
Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASPDYLLRYGSPTEPMAL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + +        +   W  + D      +++    V+   ++    V G GIA L 
Sbjct: 187 MEHNCLIYRS---WERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            Y+++D      L++++ +         Y  YP       K  A   FI  + 
Sbjct: 244 TYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRL 296


>gi|170735495|ref|YP_001774609.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821533|gb|ACA96114.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 301

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 131/301 (43%), Gaps = 11/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++
Sbjct: 1   MDKFSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     V  +L      + +    PSG LR++  +  G   L  ++  F+  +P 
Sbjct: 61  AGAVYYARAKRVLGELADADALVADRGDAPSGPLRVSVPVAYGLRRLAPHVAAFVARHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+     D AIRL     ++ ++ R L T   +  A+  YL     P 
Sbjct: 121 LDLDLQLTDERVDLVSARIDVAIRLGDAAPTADVVARPLGTFRRYVVASRAYLDAHGTPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  H  + F   + +    F       R         L+ N    + +  + G+GI
Sbjct: 181 TPGELVDHACLRFHFGVDQQTWTF---VGAQRTTQVVVTGRLKSNHSEVLREAALDGAGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD++V    +   L R+ +       +    +   Y    + + ++ AF +F+   A
Sbjct: 238 ALLPDWLVDTDLEAGRLQRLFDQYDVTPGSARAVITALYLPNQRGSKRVTAFIDFVESLA 297

Query: 295 R 295
           R
Sbjct: 298 R 298


>gi|86355948|ref|YP_467840.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280050|gb|ABC89113.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 298

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 123/300 (41%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + VF  VA + +F  A E+L +++S++S+ +  LE  +G  L  R  R ++LT
Sbjct: 1   MADDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRLGAPLVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G            ++      +++   +PSG LRI  +    + L    L  FL   P
Sbjct: 61  EAGEVFLEAVRPSMRQVRDAMQTVRDMQARPSGLLRITVSSIAERFLSGTLLTGFLQACP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ + + + + DI     D  +RL + I+   +           + A+P YL+    P
Sbjct: 121 GIKLDITITDDEFDIVEAGFDAGVRLGEVIEQDMIAVPVSAPQRQCSAASPGYLQRHAPP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  I +          + +     R         +  N    +++    G+G
Sbjct: 181 RHPRDLQNHACIGWRPRPDTAPYRWEFREN-GRDFDVAVDPMITTNDMGMMIRMACAGAG 239

Query: 241 IALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I      +V+      D   LV ++E+        Y  YP+  +   KL+A  +++   A
Sbjct: 240 ITFG---MVETFEPYVDRGELVPLLEEFCPSFPGFYLYYPKRQRQPLKLRALVDYVRRSA 296


>gi|307129411|ref|YP_003881427.1| putative transcription regulator protein [Dickeya dadantii 3937]
 gi|306526940|gb|ADM96870.1| Probable transcription regulator protein [Dickeya dadantii 3937]
          Length = 300

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 135/297 (45%), Gaps = 5/297 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             +RVF  +  + SF+ AAE+L L ++++S+ +  LE  +G++L  R  R + +T++G  
Sbjct: 5   QAMRVFVRIVEAESFSRAAEKLGLPRATVSQTLKRLELRLGVRLLQRTTRQVQVTDEGML 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++  ++E T         +PSG++RI     L + ++  +L EF   YP I + 
Sbjct: 65  YYQRCVQLLAEIEETDALFSRQRQQPSGRVRIDMPHSLARQVVIPSLPEFYRRYPQISLV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  ++  I++  +  DC +R  + +   SL+ R L ++     A+  Y      P +++ 
Sbjct: 125 LSANDSAINVMREGVDCVLRAWQ-VDDDSLVARSLPSLPQVTCASAAYCAEFGVPDTLEA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H ++ +  L         ++    + I     S +++N   + +  C  G GI   P
Sbjct: 184 LMSHRMVGYFSLRTSHRYPLEFMQQ-GQIITRTLPSLVEINGADAYIAACQAGMGIIQAP 242

Query: 246 DY-IVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            Y +V    +  LV I+  +  P   +Y  YP       +++    ++    +   F
Sbjct: 243 RYGLVPLLSSGELVEILPQLPPPDMPLYVMYPSGRFLAPRIRVVIEWLAQCFQQAPF 299


>gi|209521044|ref|ZP_03269777.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209498538|gb|EDZ98660.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 302

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 8/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +  + +F   A+S SFT AA+QL L++S++ + I+ LE  +G KLF+R  R + LT  G
Sbjct: 6   SFSGVAIFVAAAKSRSFTDAADQLGLTKSAVGKSIAKLEERLGAKLFHRTTRSIALTADG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  S    ++   +  L     +P G+LRI      G+ +L   L +    +PD+Q
Sbjct: 66  EAYFAACSAALDEISAAEAALGPGQQRPVGRLRIDMPAAFGRRVLVPILLKIGREHPDLQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             +   +  ID   +  D  +R  +   SS L+ R+L +  M   AAP YLK    P ++
Sbjct: 126 FTMTFSDHIIDPIEEGVDLVVRFGELQSSSGLVARRLTSQRMVIAAAPEYLKRKGTPKTV 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+ +    +  +  +  +W    D            Q++   +I+   + G GI 
Sbjct: 186 DDLQNHSCV----VGYRRGQPLSWRVNTDGESRRISPPPTHQISDGDTIIDAALSGLGIC 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +P  +++       LV +++ V      V+  +P+      K++   + +   A +
Sbjct: 242 QMPMSLLRPGLKGGTLVSVLDKVSKDLIDVHVVWPKVAHLRPKVRHVVDTLVALAAE 298


>gi|152986667|ref|YP_001348428.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961825|gb|ABR83850.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 306

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 128/290 (44%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR G+FT AA QL ++QS++S+ ISGLE  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLSFVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E    EL     KPSG +RI     + + LL   L   LL YPDI+
Sbjct: 65  ERLLNAIGNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  ++    DI  D  D  +RL   I    +       + M   AAP Y     +P + 
Sbjct: 125 VEFDINYAFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRNP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  HN I         +  ++     DR +       L  N+  +I+   + G GIA 
Sbjct: 185 RDLVDHNCINMRMQSGGGLYAWD-FQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIAW 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+       +   L+R++E+        Y  YP   + +       + +
Sbjct: 244 LPEEEFAPHIEEGRLLRVLENWCPLFPGYYLYYPNRRQPSPAFSLVVDAL 293


>gi|258620748|ref|ZP_05715783.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258586946|gb|EEW11660.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 310

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G 
Sbjct: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRNIRLTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T      L+    ++  +  + +G+L I+   DLG+NLL   ++EF+ L+P++ +
Sbjct: 64  IFLAKTQSAIATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIEEFIALHPNVMV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+  +  D AIR  KP   S+L+   L         A+P YL      L  
Sbjct: 124 KLELSDSLTDMYTNPVDIAIRYGKP-ADSNLVAMLLCDSNERVLCASPDYLATHPPILHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + +  ++   + +   L+                N    + +  V G GIA 
Sbjct: 183 DDLLHHNCLCY--MVSDTLHNKWILSRDGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +     +  LVRI+ +  +    +Y    +    T  ++AF+ +I  K
Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYLVCADRRLITPTIRAFQEYIRGK 293


>gi|182678435|ref|YP_001832581.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634318|gb|ACB95092.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 296

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 141/294 (47%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F   A + SF  A     +S S++ + I+ LE  +G++LF+R+ R + LT +G
Sbjct: 3   NLAGISAFVSAAEALSFVEAGRLHGVSASAVGKTIARLEARLGVRLFHRNTRSMKLTAEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +    +  +L+  + EL +    P GKLR++        +L   L EF+  YP+++
Sbjct: 63  ALFLQRCHRILGELDAAEQELSDIRAAPKGKLRVSLP--AIGTMLLPVLSEFIQRYPEVE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +D+  +  D A+R+ +    + L+ R+L   H H  A+P YL+    P S 
Sbjct: 121 LDIDFSDRKVDLIDEGFDAAVRIGE-TDDTRLLSRQLGVFHRHLVASPDYLEKVGRPESA 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H  + +       +E +  +   +  +    +S +  NS  ++    + G G+A 
Sbjct: 180 TELPRHPCLLYRFPTTGKIEPWP-VPGWESILSSRELSTVSCNSIETLTYLALEGRGVAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LPD+ VK    +  L R++   ++    +   +P + +   KL+AF + +  + 
Sbjct: 239 LPDFEVKSALADNKLERLLVTEVSTPRAMTILWPTSKQLAPKLRAFIDLLTSRL 292


>gi|91228835|ref|ZP_01262741.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|269964680|ref|ZP_06178918.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91187606|gb|EAS73932.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|269830579|gb|EEZ84800.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 315

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 131/304 (43%), Gaps = 13/304 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D+  L +F    R  S T  A +L+L +S++S+ I+ LE     KL  R  R L +TE
Sbjct: 8   TIDFRTLSIFVTSCRLLSLTKCALELNLPKSTVSKAITKLEQHFEAKLLERTTRKLVITE 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +    + +  +  +   ++QE   +  G+LRI+    L   + +     FL  +P 
Sbjct: 68  AGQMVLERAASLVEEFHSIGHDVQEMEQQIQGRLRISAPPALDAYMAEHIFLPFLKQWPK 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI L   N  +D+     D AIR+ + I    LI +KL        A+P YL     P 
Sbjct: 128 VQIALEASNDFVDLFSHGFDMAIRVGQ-IVDDRLIAKKLGYTTRVLAASPEYLAEFGVPE 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L KHN + +  +          L + D  +     S     +  +I++  + G GI
Sbjct: 187 TPEDLTKHNCLRYQYVSEIGPWT---LISHDNTVNVSITSNFSSTTVEAILKGALKGLGI 243

Query: 242 ALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A LP   V+      ++  LVR++    T    +Y  Y        +++A  + I     
Sbjct: 244 ANLP---VQNMTQELESGTLVRVLPQWHTVPMPIYLVYRPGANRPRRVQAMIDHIMSLRS 300

Query: 296 DWKF 299
            ++F
Sbjct: 301 QFEF 304


>gi|254174211|ref|ZP_04880873.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|160695257|gb|EDP85227.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
          Length = 336

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 123/290 (42%), Gaps = 6/290 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD
Sbjct: 61  AGERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A P YL     P 
Sbjct: 121 VSIELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLCAHGVPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L +H  +T         E    L   +          +Q N+  S+      G GI
Sbjct: 181 TPRDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +LP Y   ++    NLVR++         VY  YP       K++ +  
Sbjct: 239 GMLPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVE 288


>gi|320656120|gb|EFX24032.1| transcriptional activator TtdR [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 310

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +    P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTHPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVY 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|293605878|ref|ZP_06688248.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292815665|gb|EFF74776.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 321

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 83/292 (28%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D+ RVF  VA  GSF  AA  L L ++S+S  I  LET++G +L +R  R + LT 
Sbjct: 1   MDRFDQYRVFAQVAEMGSFIKAAHALELPRASVSAAIQQLETQLGARLLHRTTRQVRLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +   +E      Q S  + SG+L I     + + ++   L   L  +P 
Sbjct: 61  DGEQLLDRIRALLTDVEDIDQLFQASQRQVSGRLIIDAPSRIARRVIAPALPGLLRRHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+     DCA+R+ + +  SSL+ R L  I +   A+P YL+   EP 
Sbjct: 121 LQLTLGSSDRAIDLVQVGVDCAVRIGR-LHDSSLVVRPLGLIALINCASPAYLREHGEPK 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              EL D H  + +          + +L            S + VN+  S +  C+ G G
Sbjct: 180 QPAELPDGHWAVGYASPKTGRELPWEYLPGDGSEQIFEVPSRVVVNNAESYIACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +P + V+   D+  LV +M      S  V   YP   + + +L AF+ +
Sbjct: 240 LIQIPRFDVQHLLDSGQLVEVMPTCRAASMPVSLLYPPRRQRSRRLAAFQEW 291


>gi|291616182|ref|YP_003518924.1| PtxR [Pantoea ananatis LMG 20103]
 gi|291151212|gb|ADD75796.1| PtxR [Pantoea ananatis LMG 20103]
 gi|327396421|dbj|BAK13843.1| HTH-type transcriptional regulator PtxR [Pantoea ananatis AJ13355]
          Length = 298

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 129/293 (44%), Gaps = 11/293 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+F  W  + +F +VA  GSFT AAE+  L +SS+S++IS LE  +GI+L  R  R L L
Sbjct: 1   MAFRQWQDMALFALVAECGSFTAAAERAGLPKSSVSQRISQLEQRLGIRLLNRTTRQLNL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G +      E+    E  +  +      PSG+LRI +   +G  LL      FL  Y
Sbjct: 61  TFAGERYLLHCQEMMQASERAEQAIASLRENPSGRLRITSPAGIGATLLARCNAAFLRRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ + + + +   D+  D  D A+R  +P Q SSLI R++        AA  YL     
Sbjct: 121 PDVTLDISISDDIRDLVQDGFDLALRTGQP-QESSLIGRRVGYCQRSLVAAQAYLDQHPP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               Q+L  H  I         ++  +       P           ++ L   +  +  +
Sbjct: 180 VTHPQQLAAHRCIAHRAWNEWVLKRHDQYHRWLLP------PAHLTDNLLYARESALGSA 233

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           GI LLP +++     +  LV+++ +       ++  YP    N+  L  +  F
Sbjct: 234 GITLLPRFLIDGEMHDARLVQVLPEWEMEGNELWLVYPSRKLNSPALMKYIEF 286


>gi|168820388|ref|ZP_02832388.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205342924|gb|EDZ29688.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087315|emb|CBY97080.1| probable RuBisCO transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 303

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +P++
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPNL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARHPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|91782682|ref|YP_557888.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686636|gb|ABE29836.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 336

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 9/299 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 9   MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKL 68

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+ 
Sbjct: 69  ALTEAGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSQILPEFMH 128

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ ID+  D  D A+R+R  P ++++++ R L         AP  L+ 
Sbjct: 129 RYPEVRVVMRVTNRVIDLFEDSVDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQ 188

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L++    T           +N +A             L     ++I +  +
Sbjct: 189 NAPPLLPADLNRFE--TLDVPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMTIREAVL 246

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G GIA LP+ +         L  +M     P+  +Y  +         ++AF +++  
Sbjct: 247 AGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVFVSRQGMVPAVRAFVDYLVE 305


>gi|288935805|ref|YP_003439864.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890514|gb|ADC58832.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 301

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 130/292 (44%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++++  V  + SF  AAE L   +S++SR +  LE  +G +L  R  R L++T 
Sbjct: 1   MDRLDAMQLYVTVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     +  ++   +      S +P+G+ ++     L ++ +   + EFL  YPD
Sbjct: 61  EGRRYYEECKRLLAEMAAMEASFPGRSAQPAGRFKVGMPQSLARHCILPRIGEFLQQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI  +  DC IR  +   S++L+ R L        A+P +L     P 
Sbjct: 121 LELILCSSDNVEDIIQEGFDCVIRTGRIEDSTTLVARPLARYRWMVLASPAWLAAHGRPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            I +L +H  + +  L  +     +WL ++ D          L V+   + +Q  V G G
Sbjct: 181 GIDDLHQHRAVGY--LNHRTGRTIDWLFSLNDGDCAIRMQETLVVDDTDAYIQAGVQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+ +    +  LV  +E        +   YP+       ++AF ++
Sbjct: 239 LIRVASYLAQPYLQSGALVACLEQ-AASDLPLSLVYPQNRYLPPAVRAFYDW 289


>gi|218550527|ref|YP_002384318.1| DNA-binding transcriptional regulator [Escherichia fergusonii ATCC
           35469]
 gi|218358068|emb|CAQ90714.1| DNA-binding transcriptional regulator, efflux system [Escherichia
           fergusonii ATCC 35469]
 gi|324115153|gb|EGC09117.1| LysR substrate binding domain-containing protein [Escherichia
           fergusonii B253]
 gi|325498822|gb|EGC96681.1| DNA-binding transcriptional regulator [Escherichia fergusonii
           ECD227]
          Length = 309

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 129/287 (44%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H++     +L   +  P G LRI  +  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLHEVRDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLSQYGIPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++++++   G+GIA +
Sbjct: 183 DLSSHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P  +++ +     L  ++    +    VY  Y E  K   K++   N
Sbjct: 240 PLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKMPLKVQVVIN 286


>gi|330888402|gb|EGH21063.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 298

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 8   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +  +L  YP   + L++
Sbjct: 68  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSVDLLI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P S QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQL-DPNVIARPLGHCDSVVCASPAYLAMHGTPSSPQELAA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E          P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 187 HNCLTYSYFGKSLWE----FTRQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+ ++ D    +  ++  Y      +  L+   +F+  
Sbjct: 243 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFLAE 289


>gi|324010235|gb|EGB79454.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
          Length = 308

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 142/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 2   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 61

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G  L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 62  SLTEEGQHLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLIEPHIGEFLT 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 122 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 181 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVVGGNEEFEIEVSGKYISNDDESMIRM 240

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 241 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 300

Query: 292 LK 293
            K
Sbjct: 301 EK 302


>gi|146291222|ref|YP_001181646.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145562912|gb|ABP73847.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 320

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA+ GSFT AA+ L ++ S++S+ I  LET +G KL +R  R ++LT  G   
Sbjct: 20  EIRHFVTVAQLGSFTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSY 79

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     L+  Q  L      PSG++R+   +  G+  +   L      YP +++ +
Sbjct: 80  LIDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLSLSQKYPKLELSI 139

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++  D+  D  D A+R+ +   +  L+ R+L        A+P Y      P S ++L
Sbjct: 140 TFNDRATDLFNDGIDLAVRVGQLGDTVDLVARRLGEQRRVICASPAYFGRLGTPQSKEDL 199

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I    +     +   WL   +  I E        ++    +I+   + G G+A +
Sbjct: 200 SQHQCI----VGWPLGQQHRWLLKNEDGITEAHDIPVRHEIADCEAILAATLAGVGLAQV 255

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P ++V+D      LV +++D+ +    ++  + +      KL+     +   A+
Sbjct: 256 PIWLVEDYLKTGELVSVLDDLASDDTPIHLIWLKTPYLQPKLRVIIEELLELAK 309


>gi|78065829|ref|YP_368598.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966574|gb|ABB07954.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 324

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 122/289 (42%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L VF   A   SF  A+ +L ++ S+IS  I  LE  +G++LF R  R ++LT+ G
Sbjct: 11  DLFSLNVFLAAATHLSFRAASIELDVTPSAISHSIKSLEQRLGVRLFNRTTRSVSLTDAG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          +    + +      PSG +RI  +    + +L+  L  FL  YP + 
Sbjct: 71  ERLVDKLRPAISSVAEAMLAVDGMRDTPSGTVRINASEGAIRLVLKPVLARFLRDYPQVH 130

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++ D +  DI     D  IRL + +    +  R    +   A A+P Y      P   
Sbjct: 131 LDIVTDGRLGDIVAGGFDAGIRLAEAVPQDMIAVRVSDPVRFAAVASPAYFAAHGRPDVP 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L++H  I F          + W       +    +S  L +     ++   + G GIA
Sbjct: 191 QDLERHACIRFRF---DSGAIYRWEFERRGVVETVNVSGPLTLTDQPLMVDAAIDGIGIA 247

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +PD++V D   +  L R++ D       +   YP     +G L+A  +
Sbjct: 248 FVPDHLVHDALADGRLERVLADWCPVMPGLCLYYPGHRHVSGGLRALID 296


>gi|308185557|ref|YP_003929688.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1]
 gi|308056067|gb|ADO08239.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1]
          Length = 305

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 140/302 (46%), Gaps = 12/302 (3%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M  D  WD L    V+A  GSFT AAE+L +S++++S++I  LE   G+ L  R  R + 
Sbjct: 4   MKTDTLWDHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKELEQIAGVLLVQRTTRSVR 63

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT  G KL     E + ++E +   +++++    G +RI   +   +  L   + EFL  
Sbjct: 64  LTSAGEKLVEELREPFARIEQSFFSVRDTAGPVRGLVRITAPVAFARQQLVPIIGEFLRD 123

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP +++QL + ++ + +S +  D AIR    +  +  +   L        A+P YL    
Sbjct: 124 YPQLRLQLDVTDRIVSLSSEGFDLAIRHSDTLPETH-VALPLCDTQTVLVASPAYLNQQG 182

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVL 237
            P + Q+L +HN + +   +      + ++   D    + RI  C   N+  SI    + 
Sbjct: 183 IPNTPQDLMQHNCLYYPRGVES--PRWRFVTAADGEEVQVRIQGCFATNNSESIRDAALQ 240

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIF 291
           G GIA+LPD+  ++     +L +++ +          ++   P A +    +  F  ++ 
Sbjct: 241 GLGIAMLPDFSAREALAAGSLQQVLPEWQPVEAFAARLWIVRPWAAQVPRAVTTFTQWLR 300

Query: 292 LK 293
            +
Sbjct: 301 AR 302


>gi|170720051|ref|YP_001747739.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758054|gb|ACA71370.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 315

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA+ GSFT AA QL  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAQLGSFTAAAAQLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLMRCEQILTYVEEAEAEASDAHARPAGQLKVHSMTGVGQHFVVDAIARYRESHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + N+  D+  +  D +I L   +  S  + ++L   +    A+P Y+       
Sbjct: 121 VTFDLTMANRVPDLLDEGYDVSIVLATELPDSGFVSQRLGITYSIVCASPEYVARNGFAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +     +   +E + +     + +     S  QVNS  ++      G G+
Sbjct: 181 KPVDLLQHACLRMVSPVIP-LEKWLFDGPEGQELVNITSSPFQVNSADAMKTAIRSGMGM 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP Y   D   + +LVR+M D       +Y  YP       K+K +  ++
Sbjct: 240 GVLPIYSAIDGLRDGSLVRVMPDYRLQELNLYAIYPSRQYLDAKIKTWVEYL 291


>gi|332850266|ref|ZP_08432614.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332871233|ref|ZP_08439802.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332730841|gb|EGJ62150.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332731642|gb|EGJ62926.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 300

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 137/297 (46%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I +QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EILLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
             S  EL  H +++  +   + ++    L   D  + + ++S  +   +   + Q     
Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYMLAQLASQN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIALLPD   +D   +  LV+I+ D        +  YP        ++ F +++  
Sbjct: 238 CGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYPSRRGLLPAVRVFIDYLVE 294


>gi|256024482|ref|ZP_05438347.1| putative LysR-family transcriptional regulator [Escherichia sp.
           4_1_40B]
          Length = 294

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS ISR +  LE  +G++L  R  R L+LT  G
Sbjct: 6   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGISRAVRELEERLGVQLLVRTTRKLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+R     +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  ELLYRNVESGFDALDMGLATLAHYRHTPSGTVRINASQHAIDKVLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  IRL   + S  +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIITERFDAGIRLGSEVDSGMVAVRISPDMEMAVVGTPGHFQRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +       +  +       +   +P+      +SY+       LG G+A 
Sbjct: 186 TDLVGHPCIAY-QFGDGSLYAWELNQDGKKITHQPQGQWAFADSYMEAK-AARLGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P+ +V D+     L+R+++         Y  YP     +  L+A  +
Sbjct: 244 VPEELVSDDIEQGALIRVLQCYSQRLEGSYIYYPH-RNVSPALRAVID 290


>gi|146292056|ref|YP_001182480.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145563746|gb|ABP74681.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
 gi|319425350|gb|ADV53424.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 299

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 137/298 (45%), Gaps = 11/298 (3%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M  +   D +R+F+VVA+ GSF  AAE L +  S++SR+I+ LE  +G++L +R A  + 
Sbjct: 1   MKLNYSLDDMRLFWVVAQQGSFKLAAEHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVN 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT  G +       ++ +L     EL     +  GKLRI+  I+     L  +L  F L 
Sbjct: 61  LTATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYLWLGESLNAFQLR 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP+I I L L N +ID+S +  D A R+ +P +    I R L TI     A+        
Sbjct: 121 YPNIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISFVLCAS-STATQWH 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
              SI+EL++H +I      P          T      EPR +  L V+      Q  + 
Sbjct: 179 SLQSIEELEQHPVII---AKPAKTWRLQHNITGQDFEFEPRGNIKLAVDDMAIASQAVMA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI LLP  +  +   +  L++I+ +      T Y  Y +      +++   +F+  
Sbjct: 236 GLGIGLLPISMASERIQSGKLIQILPEWKGAPRTAYLMYRDRDNLPLRVRLLIDFMLE 293


>gi|323191415|gb|EFZ76677.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Escherichia coli RN587/1]
          Length = 308

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 143/301 (47%), Gaps = 8/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 2   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNAKLIYRTTRNM 61

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 62  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLIEPHIGEFLT 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP  +I+LI+D+   +I  D  D  IRL + +            I +   A+P YLK  
Sbjct: 122 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLIKLVTVASPDYLKEH 181

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYC 235
             P + QEL  HN +         +  + +  +A  +             N   S+++  
Sbjct: 182 GIPETPQELSNHNCLRLRHKSSGALSAWEFSNVAGGNEEFEMEVSGKYISNDDESMIRMA 241

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+  
Sbjct: 242 LNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMVE 301

Query: 293 K 293
           K
Sbjct: 302 K 302


>gi|170696917|ref|ZP_02888013.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170138091|gb|EDT06323.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 303

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 130/298 (43%), Gaps = 7/298 (2%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+  +D L     F  V   GS T  A  L  + S +SR I+ LET +G++L  R  R L
Sbjct: 1   MARRFDHLGDVEAFVTVIEKGSMTAGAVALASTPSVLSRAITRLETRLGVQLLRRSTRRL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTEQG      +   +  ++  +  +Q      +G +R++     G   L   L++F  
Sbjct: 61  SLTEQGRLYLEQSRAAFLLIDDAERAIQGHGGTLTGHVRLSVPTTYGHYRLPPLLRQFTQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P+++++L + N+++D+  +  D AIRL + +  S L+ RKL    +   A+P Y+   
Sbjct: 121 QHPEVRVELNIANRNVDLVAEGFDLAIRLGE-LPDSGLVARKLEDAALCLVASPEYVARA 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P  + +L  H  + F       +  + +          P  +    +  L ++     
Sbjct: 180 GMPEGVADLAHHLCLPFMLPSSGRIAPWVFRDGGQDIDWLPPSNVAVSDDVLGVVSMAQS 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+GI    D+IV+D     +LV ++  +   S      Y    + +   +A  + I  
Sbjct: 240 GAGICQTYDFIVQDRVRAGSLVEVLPHLRGRSRPFSVIYAPHRRLSAASRALIDMIVA 297


>gi|126726824|ref|ZP_01742663.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126703782|gb|EBA02876.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 303

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  + ++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEEHLSVRLFQRTTRSLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +    E+   ++  + ++   +  P G L +A  + +G+ L+  ++  FL  YP
Sbjct: 60  EQGQAFYGGACEILDSVDNAEAQIVNITDNPKGSLYVAAPLGVGRRLIAPHVPAFLDQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L L ++ +D++ +  D AI L +P+  S+L  RK+  I     A+P Y+     P
Sbjct: 120 EVTIRLRLTDRKVDLTTEGLDLAIFLGQPV-DSNLRIRKIADIERVLCASPSYIARNGNP 178

Query: 181 LSIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVL 237
            +   L    H  +           +F W       +   R+S   + +    +  + + 
Sbjct: 179 ETGDALVAGNHECLNLRF---PGAPEFQWPLMTSEGVKRFRVSGRYESDDGDVLTDWALG 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GIAL P + V D+    +LV++ +        +   Y        K + F +F+  +
Sbjct: 236 GHGIALKPIFEVADHLKSGDLVKVAKGTPPEPIQMACLYTHKRGQDPKTRMFMDFMIKR 294


>gi|24376001|ref|NP_720044.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24351004|gb|AAN57488.1|AE015885_1 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 325

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 10/288 (3%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    + VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTL
Sbjct: 1   MNRNMVKGMIVFATIAEKGSMSAAAQQLNLSSSAVSQQVAKLEMDMGISLFHRNTRHLTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G   +    ++   +E+ + +L      PSG+L+IA  +  G  LL   L   L  +
Sbjct: 61  TEAGHLFYENCIKIIKIVESGEHKLNALKGTPSGELKIAAPVGFGSGLLSQPLANLLAAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + L L +  IDI  +  D AI +  P+  S+LI R L    M   AAP Y+   + 
Sbjct: 121 PQISLNLQLQDGPIDIVNEGIDLAICIG-PLSDSNLIARPLADWRMLLCAAPSYIPQHQI 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                EL   N I+     P+ +        V+          + VN+  +++Q  + G 
Sbjct: 180 LQHPGELQAFNRISHSYAKPEFLTHSQTQERVELSA-----QRISVNNMQTLIQLTLDGL 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G A+LP+  V     +  LV ++ +    +++VY       K   K+K
Sbjct: 235 GFAVLPEPEVHQYLASGQLVTLLPEWSLRTYSVYSVTSARDKQPAKVK 282


>gi|195939441|ref|ZP_03084823.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. EC4024]
 gi|256018843|ref|ZP_05432708.1| putative DNA-binding transcriptional regulator [Shigella sp. D9]
 gi|256024183|ref|ZP_05438048.1| putative DNA-binding transcriptional regulator [Escherichia sp.
           4_1_40B]
 gi|261228248|ref|ZP_05942529.1| transcriptional regulator, LysR family protein [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255104|ref|ZP_05947637.1| putative DNA-binding transcriptional regulator AaeR, efflux system
           [Escherichia coli O157:H7 str. FRIK966]
 gi|297517621|ref|ZP_06936007.1| putative DNA-binding transcriptional regulator [Escherichia coli
           OP50]
 gi|301028719|ref|ZP_07191927.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|306816422|ref|ZP_07450554.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
 gi|307139931|ref|ZP_07499287.1| putative DNA-binding transcriptional regulator [Escherichia coli
           H736]
 gi|331659523|ref|ZP_08360465.1| HTH-type transcriptional activator AaeR [Escherichia coli TA206]
 gi|222034953|emb|CAP77696.1| HTH-type transcriptional activator aaeR [Escherichia coli LF82]
 gi|299878265|gb|EFI86476.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|305849987|gb|EFM50446.1| putative DNA-binding transcriptional regulator [Escherichia coli
           NC101]
 gi|307625164|gb|ADN69468.1| putative DNA-binding transcriptional regulator [Escherichia coli
           UM146]
 gi|312947793|gb|ADR28620.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|320175960|gb|EFW51036.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           CDC 74-1112]
 gi|320189590|gb|EFW64249.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EC1212]
 gi|320194720|gb|EFW69350.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           WV_060327]
 gi|320202153|gb|EFW76728.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           EC4100B]
 gi|320640035|gb|EFX09616.1| transcriptional regulator [Escherichia coli O157:H7 str. G5101]
 gi|320645605|gb|EFX14614.1| transcriptional regulator [Escherichia coli O157:H- str. 493-89]
 gi|320650915|gb|EFX19372.1| transcriptional regulator [Escherichia coli O157:H- str. H 2687]
 gi|320656296|gb|EFX24208.1| transcriptional regulator [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661986|gb|EFX29394.1| transcriptional regulator [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666820|gb|EFX33799.1| transcriptional regulator [Escherichia coli O157:H7 str. LSU-61]
 gi|323183004|gb|EFZ68403.1| HTH-type transcriptional activator aaeR [Escherichia coli 1357]
 gi|326337938|gb|EGD61772.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. 1125]
 gi|326347507|gb|EGD71232.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. 1044]
 gi|330909287|gb|EGH37801.1| putative transcriptional regulator LYSR-type [Escherichia coli
           AA86]
 gi|331054105|gb|EGI26134.1| HTH-type transcriptional activator AaeR [Escherichia coli TA206]
 gi|332345199|gb|AEE58533.1| transcriptional activator protein AaeR [Escherichia coli UMNK88]
          Length = 303

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 78/284 (27%), Positives = 129/284 (45%), Gaps = 7/284 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
            H+ + +     +   +F  +A                N  ++++++   G+GIA +P  
Sbjct: 180 SHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYVPLM 236

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +++ +     L  ++    +    VY  Y E  K   K++   N
Sbjct: 237 WVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 280


>gi|163857450|ref|YP_001631748.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261178|emb|CAP43480.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 317

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 9/296 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D    ++VF  V   GS + AA++L +S++ +SR ++ LE  VG++L +R  R L+LT
Sbjct: 15  TMDRLKAMQVFVEVVDRGSLSAAAQRLDMSRAMVSRYLAELEEWVGVRLLHRTTRRLSLT 74

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G++       +   +      +     +P G+LR+  ++  G   L   + +F++ YP
Sbjct: 75  PAGAETLPRCRRMLDLVGEMHESVATPDTEPRGELRMTVSLSFGAAQLGCAVADFVVRYP 134

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              I L L ++ +++  +  D A+R+   +   +LI RKL        AAP YL+    P
Sbjct: 135 GTSIDLQLIDRTVNLVQERVDLAVRITNEL-DPNLIARKLAPCRSVVCAAPSYLQAYGSP 193

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L KHN +T               A VD P+       +  N  L + +    GSG
Sbjct: 194 SRPEDLAKHNCLTHSHYGKSLWRFRRDNAWVDVPVS----GNITANDALLLARAAAQGSG 249

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IALLP Y+         L  +++        +Y  Y    +    L+   +F+  +
Sbjct: 250 IALLPSYLAGPELAAGRLTALLQATPPEELGIYGVYVSRRQMPLILRTMLDFLAER 305


>gi|186476703|ref|YP_001858173.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184193162|gb|ACC71127.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 325

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 129/299 (43%), Gaps = 9/299 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q ++   L EF+ 
Sbjct: 61  ALTEAGQLFYQHCQAMLSEAQAAVNVVQQLRASPRGTVRVSVPVTISQTIMSQILPEFMH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ +D+  D  D A+R+R +P ++++++ R L         AP  L  
Sbjct: 121 RYPEVRVVMRVTNRVVDLFEDSIDVALRVRSEPPENANIVVRPLWRTQQMLVGAPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L +    T           +N +A             L     + + +  +
Sbjct: 181 NAPPLEPADLKRFE--TLDTPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMMVTEAAL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G GIA LP+ +      +  L  +M     PS  +Y  +         ++ F +++  
Sbjct: 239 AGVGIAALPEMMYGAALRSGRLSPVMPGWTLPSPQLYAVFLSRQGMVPAVRTFVDYLVE 297


>gi|27367830|ref|NP_763357.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37675958|ref|NP_936354.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|27359403|gb|AAO08347.1|AE016813_99 Transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37200498|dbj|BAC96324.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 303

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 132/290 (45%), Gaps = 10/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA++L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLASFILVVNEGSFTAAAKKLDVTPSALSKLITRLEQALQVKLFERTTRKLLITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 72  YDQSIAMVNAAQQAIEISASDHSEPAGALTVAAPEAFLNSVLQPFVVPFLQQYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+  D  D A +L       +L+ ++L   H+   A+P YL     P    EL
Sbjct: 132 RAADGEIDLFRDNIDVAFKLTDK-PDENLVLKELSKTHLVLCASPDYLAQRGMPTHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +   +     +  F      +            VN     +     G GI +  D
Sbjct: 191 TEHDCLYLAENDKDNLWSF---FKDEAFYSVAVSGRYAVNHSQMRLNGVKQGLGIGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           ++++D      +V++++D +  S     +   YP+      +L+ F +FI
Sbjct: 248 FVIRDALERGEVVKVLDDWMIKSNYHGAIAMQYPQTKYMPARLRVFIDFI 297


>gi|307544050|ref|YP_003896529.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307216074|emb|CBV41344.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 298

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 121/293 (41%), Gaps = 9/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F  V   G  T AA  L  S  S+SR ++ LE  +GI+L  R  R  T +E G 
Sbjct: 4   LEDLEAFVGVVEQGGLTAAARWLDRSVQSVSRALATLEDNLGIELVERTTRRSTPSEAGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R       +++  ++E  +S + PSG LRI   +      L   + +F+  YP+I +
Sbjct: 64  AFYRRVKPALEEIKEARLEATDSRIAPSGLLRIGAPVLFAPVYLMPVIADFMRRYPEIDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ ++   +  D A+R+ + +  S L  R+L ++    + AP Y      P    
Sbjct: 124 ELKLSDRFVNFEEEELDLAVRIGE-LPDSDLKARRLGSLRRVVFGAPGYFARHGRPRHPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I    L         W   +  R    P     + ++  +I        G+  
Sbjct: 183 DLQRHACI----LRTVDRHPNQWTFQINGRTRSVPVSGSFRADTMTAIYSAVTHELGLGF 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P + ++   D   +  ++     P   V+  +P       K + F+ ++  +
Sbjct: 239 SPLWQIRHLVDAGQVELVLTSYELPPVPVHIVWPSGRSPLAKTRLFKEYLLEQ 291


>gi|291619112|ref|YP_003521854.1| AaeR [Pantoea ananatis LMG 20103]
 gi|291154142|gb|ADD78726.1| AaeR [Pantoea ananatis LMG 20103]
 gi|327395442|dbj|BAK12864.1| HTH-type transcriptional activator AaeR [Pantoea ananatis AJ13355]
          Length = 305

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 125/289 (43%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  V   GSFT AA QLHLS SSIS+ ++ LE  + +KL  R  R + LTE G 
Sbjct: 4   LKGMSIFAKVVELGSFTAAARQLHLSVSSISQIVAKLEDALQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +      +L   +  P G LRI ++  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLAEANQVHEQLYAFNNTPIGVLRIGSSSTMAQNVLAGMTSDMLRDYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   ++ SSL  R+L  + M   AA HYL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LKDSSLFSRRLGAMPMVVCAAKHYLTQHGTPEKPG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++ K   + +        E       V R   + R      N   +++++   G+GIA +
Sbjct: 183 DITKFAWLEYSVRPDNNFELIAPEGIVTRLSPQGR---FVTNDSQTLIRWLKAGNGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V D      +  +     +    VY  Y E  K   K++   +++
Sbjct: 240 PMMWVADEIKKGEIDILFPQYQSDPRPVYALYTERDKLPLKVQVCIDYL 288


>gi|262191742|ref|ZP_06049916.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93]
 gi|262032381|gb|EEY50945.1| transcriptional regulator LysR family [Vibrio cholerae CT 5369-93]
          Length = 314

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 131/304 (43%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE
Sbjct: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP+
Sbjct: 61  SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  SSLI RKL T      A+P YL     P 
Sbjct: 121 VVPYLYLNDNISNLAESGLDVVIRYGE-LADSSLISRKLATSRRVLCASPVYLARKGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W    +       I      +    I Q+ + G G
Sbjct: 180 TPQDLVQHDCLA---MVRSNEEMKTWHFQENEQHKVITIVPKSFADDGEVIRQWALAGMG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+D+     LV +++  +             +   Y        +L+ F +F
Sbjct: 237 IALKSILDVQDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LIEQ 300


>gi|288958403|ref|YP_003448744.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288910711|dbj|BAI72200.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 295

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 124/293 (42%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA++LH++Q++IS QI  LE  +G+ LF R  R L LTE G 
Sbjct: 8   LNALRAFEAAARHLSFTKAADELHVTQAAISHQIKALEEWLGLPLFRRMNRALALTEAGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E    L      L  +    SG L I+T        L   L  F   +P++ +
Sbjct: 68  SYLPPVREAMDTLSQATDRLIRADS--SGTLTISTMPSFASKWLVPRLMRFQKRHPEMDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D +    D AIR    +    L   +L+T  +     P  L   R  ++ +
Sbjct: 126 RVHSTSQMVDFARHDVDLAIRFGSGLW-PDLRVERLLTEDIFPVGHPSLLSGNRPLVNPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+     I   +             G      L+ +     +Q  + G GIAL 
Sbjct: 185 DLRHHTLLHDDYNISWAVW-----CRAAGIEGVDTERGLRFDDSSFTLQAAINGHGIALA 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              +V D+     LVR+ E  +  S   Y   P    +  K+KAF +++F +A
Sbjct: 240 RGVLVADDIAAGRLVRLFEVRLPGSLAYYVVAPHHYYSRPKVKAFHDWLFEEA 292


>gi|254254503|ref|ZP_04947820.1| Transcriptional regulator LysR family [Burkholderia dolosa AUO158]
 gi|124899148|gb|EAY70991.1| Transcriptional regulator LysR family [Burkholderia dolosa AUO158]
          Length = 311

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 127/296 (42%), Gaps = 10/296 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MSFD      + V   V  +GSF+ A E L LS S +SR I+ LE  +G++L  R  R L
Sbjct: 1   MSFDGRLLSGMSVLAAVVEAGSFSRAGEVLGLSASGVSRSIARLEERLGVRLLDRTTRTL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT  G+ L+   +     +E     +  ++V   G LR+       + +L   L     
Sbjct: 61  HLTSDGASLYERAAPHLEGIEEAASYVSGAAVTVRGTLRVGLNPIFARYVLAPKLPLLRE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P + + ++      D+  +  D A+R   P   S++  R L+   +   A+P YL   
Sbjct: 121 RHPGLDLTILQQPDIGDLVSEGIDVAVRFG-PQPPSTMTSRLLLRTRVLTVASPGYLARH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
             P   ++L  H+ I + D  P+  + F+W     R +   + S  L       ++Q CV
Sbjct: 180 GRPRRPEKLVDHDCIQYID--PRRGKPFSWEFHRGREVLPVQTSGHLTTTDVDLMVQACV 237

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G+GIA +    V+    +  LV +  +    ++ +Y   P        + AF  F
Sbjct: 238 NGAGIAQVLALNVRHLLTSGALVELFPEWPDETYPLYAIRPSRRLPPAAVDAFLKF 293


>gi|194436874|ref|ZP_03068974.1| LysR substrate binding domain protein [Escherichia coli 101-1]
 gi|194424356|gb|EDX40343.1| LysR substrate binding domain protein [Escherichia coli 101-1]
          Length = 295

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS ISR +  LE  +G++L  R  R L+LT  G
Sbjct: 7   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGISRAVRELEERLGVQLLVRTTRKLSLTHAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+R     +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 67  ELLYRNVESGFDALDMGLATLAHYRHTPSGTVRINASQHAIDKVLLPKLAVFKQRYPDIR 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  IRL   + S  +  R    + M     P + +    P + 
Sbjct: 127 LELISESRFVDIITERFDAGIRLGSEVDSGMVAVRISPDMEMAVVGTPGHFQRYGFPQTP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +       +  +       +   +P+      +SY+       LG G+A 
Sbjct: 187 TDLVGHPCIAY-QFGDGSLYAWELNQDGKKITHQPQGQWAFADSYMEAK-AARLGLGLAY 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P+ +V D+     L+R+++         Y  YP     +  L+A  +
Sbjct: 245 VPEELVSDDIEQGALIRVLQCYSQRLEGSYIYYPH-RNVSPALRAVID 291


>gi|300905800|ref|ZP_07123534.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|301301899|ref|ZP_07208033.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|300402399|gb|EFJ85937.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300842880|gb|EFK70640.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|315256972|gb|EFU36940.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
          Length = 310

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  +      ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYHRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|73537962|ref|YP_298329.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72121299|gb|AAZ63485.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 304

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W ++ +F   A  GS + AAE L +S ++ SR +S LE  +  +L  R+ R L LT+
Sbjct: 1   MDRWTEIELFVQTAEFGSISRAAESLEMSNAAASRYLSSLERRLSARLIERNTRRLYLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  R   E+  +++  + ++  + ++PSG L I  ++      L   + EF   YP 
Sbjct: 61  VGEQYFRRCKELLAEMKEAEADVSAAVLEPSGTLTITASLSFAMKHLAPLVPEFTTRYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++  N+  DI     D AIR R+    S+L  R+L        A P YL     P 
Sbjct: 121 VNVNVLAANRYYDIMDSGTDLAIRTREFEPDSNLTVRRLAQTRRVLAATPRYLDTHGIPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S++ L  H+++ +          F      D        S ++ N    +    + G GI
Sbjct: 181 SVEALADHSMLIYSYANRPNELSFT---RGDEKQVVTVRSKMESNDGQVLRAAALEGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + P YI+ D+     L+ +++D   P  T+   +        + + F   + 
Sbjct: 238 LVQPKYILYDDIVAGRLIPVLDDWDLPRLTINIAFQNRTHLPARTRLFIELLV 290


>gi|300114271|ref|YP_003760846.1| lysR family transcriptional regulator [Nitrosococcus watsonii
           C-113]
 gi|299540208|gb|ADJ28525.1| transcriptional regulator, LysR family [Nitrosococcus watsonii
           C-113]
          Length = 301

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 118/296 (39%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L   +S +SR+I  LE  +G++L  R  R  ++TE G
Sbjct: 3   DLNDLYYFVQVVDHGGFAPAGRALGEPKSKLSRRIGKLEERLGVQLLQRSTRHFSVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  ++ +  +P G +R++  + L +  +   L  F+  +P + 
Sbjct: 63  QTYYAHCKAMLVEADAAQEAIELTRAEPCGIVRMSCPVALLEARVGTMLAAFMAQHPRVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P + S L+ R L        A+P  L+    P  
Sbjct: 123 IHLEATNRRVDLISEGIDLAIRVRPPPFEDSDLVMRILGNRRQSLIASPRLLQQVPTPRL 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G   P     +N L                     ++    + G GI 
Sbjct: 183 PTDLAHLPSLGLGQ--PHHEFQWNLLGPNKAQATVKHWPRFITRDMTALRTAAIAGVGIV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP+ +++       L+ ++ D      T++  +         ++   +F+  + +
Sbjct: 241 QLPNMMIRAELAGGELLPLLPDWAPRPETIHAVFVSRRGLLPSVRTLIDFLVAQFK 296


>gi|161525145|ref|YP_001580157.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160342574|gb|ABX15660.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 307

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 128/292 (43%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V     F  A+  L + +S++SR+I+ LE ++G++L +R  R  ++T+ G
Sbjct: 10  DLNDLYFFAQVVDHRGFAPASRALGIPKSTLSRRIAALEQQLGVRLVHRSTRQFSITDIG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     V  + E  Q  +++   +P G +R+   + L    +   L EF+   P + 
Sbjct: 70  QHYYNHCKAVLVEAEAAQDAIEQMRAEPRGVIRLVCPVALLHARIAPMLAEFMAKTPRVT 129

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        A+P  ++   +   
Sbjct: 130 VHLEATNRVVDVIGEGVDVALRVRPPPLKDSDLVMRVLGERAWSLVASPALVRQH-DIAV 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     + FG   P+          V   I    +     +  +++ Q  V G G+ 
Sbjct: 189 PADLAGCPTLDFGPPQPQHAWQLEGRDGVQTTI--RHVPRFVTDDMVALRQAAVAGVGVV 246

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LP  +V D      LVR++ D +  S  ++  +P        ++A  +F+ 
Sbjct: 247 QLPMMMVSDEIRRGELVRVLPDWLPRSGIIHAVFPSRRGLLPSVRALLDFLV 298


>gi|167905975|ref|ZP_02493180.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 336

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD
Sbjct: 61  AGERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P 
Sbjct: 121 VSIELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  +T         E    L   +          +Q N+  S+      G GI
Sbjct: 181 TPCDLARHACLTLRTPAFPTNEWL--LEGPNGTEEIKVDGPVQTNTAESLAVAIRAGIGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP Y   ++    NLVR++         VY  YP       K++ +   +
Sbjct: 239 GMLPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEAL 290


>gi|188583418|ref|YP_001926863.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179346916|gb|ACB82328.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 337

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 129/294 (43%), Gaps = 12/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D LRVF  + R+GS + AA++L +S + +S+++  LE ++G++L  R  R L LTE+G
Sbjct: 9   SIDDLRVFDAIVRAGSLSRAAQELDVSLTLVSKRLKRLEAQLGVRLLQRTTRQLGLTEEG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +           ++  +    +      G +R+  T    Q  +   L  FL LYPDI 
Sbjct: 69  QEFLGRCRLALDAIQAAEEVCGDGHS---GIVRVTATAAFAQRQIAPRLHRFLALYPDIS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q++  +  +D+     D A+R + P+  S LI R LV       A+P YL     P   
Sbjct: 126 VQILTSDDVLDLVERRIDLAMR-QAPLADSRLIARPLVPDARVLCASPAYLAEAGTPRDP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L KH  +T GD  P     +    +V+  I          N         +   GIA+
Sbjct: 185 IDLTKHACLTVGDPPPAQWRLWRGEESVEVSIRSVAGG----NDGEICHVGALADLGIAM 240

Query: 244 LPDYIVKDNPN---LVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + V D+     LVRI+ +        V   YP  L    +++AF  F+  +
Sbjct: 241 KAAWDVVDDVRAGCLVRILPEWWGGTDRWVRIVYPARLHQPRRVRAFVAFMEEE 294


>gi|84499914|ref|ZP_00998180.1| hypothetical protein OB2597_08239 [Oceanicola batsensis HTCC2597]
 gi|84391848|gb|EAQ04116.1| hypothetical protein OB2597_08239 [Oceanicola batsensis HTCC2597]
          Length = 311

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 131/295 (44%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++ D D LR+F + A   + + A  +L L+ +  S +++ LE E+G++L  R  R ++L+
Sbjct: 9   IAVDTDSLRLFVMAADRLNISAAGRELGLAPAVASARLAKLEQELGVELLRRTTRKVSLS 68

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+       E+  + +  +  L  +   P G LR A      Q  +   L EF   YP
Sbjct: 69  LDGADFLPYAREILAQADAGRAALGGTGAGPKGTLRFAAPSSFAQLHIMPLLPEFHEEYP 128

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L L +   D      D A+R   P+  SSL  RKL        AAP YL     P
Sbjct: 129 DLTLDLRLSDTRFDAIEGSFDLALR-SGPLTDSSLKGRKLADDTRILCAAPAYLDRRGMP 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H+LI +G+L P+ + +      +  P      + L  +   +  +  + G+G
Sbjct: 188 QTPTDLSGHDLIAWGNLEPRELVNAQRETALLDPASMTCRTIL--DDGDAQREATLAGAG 245

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRNFIF 291
           +++   + V        LVRI+ +      +V +  YP     T K + F +F+ 
Sbjct: 246 LSMNSLWNVAGEIARGRLVRILPEWKMNDRSVLWLIYPRTNVLTPKTRVFMDFLI 300


>gi|21229763|ref|NP_635680.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766639|ref|YP_241401.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21111254|gb|AAM39604.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571971|gb|AAY47381.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 297

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 130/295 (44%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L     + R GSFT AA +L +SQS++S  I GLE  +G++L  R  R +  TE G
Sbjct: 5   NFKDLLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEATLGLRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     L E    P+G +RI  T    + +L   L   L  YPDI+
Sbjct: 65  ERLIQTVAPRFAEIEEALSALSEMRDTPAGSVRITATDYAAREILWPKLAVLLRQYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN   DI  D  D  +RL   ++   +  R    + M   A+P YL+    P + 
Sbjct: 125 VELVVDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMALIASPAYLERRPLPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H  I         +  +  L    R I       L  NS    +   + G GIA 
Sbjct: 185 QDLTAHLCINLRMTTAGGIYAWE-LEKDGREIAVRVEGQLTFNSIYEALDAALQGFGIAF 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + + + + +     L  +M+D       ++  YP    ++    AF N +    R
Sbjct: 244 VQEDLARPHIKAGRLRWVMKDWSPTWPGLHAFYPSRRHSSP---AF-NLVLEALR 294


>gi|190892374|ref|YP_001978916.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697653|gb|ACE91738.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 298

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 130/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  VA   SFT AA +L ++QS++S  +  LE  +G++L  R  R +  TE G
Sbjct: 5   NFNELLLFLAVAEERSFTRAAAKLGVAQSTLSYAVKELEARMGLRLLTRTTRSVATTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    ++E     L     KP+G +RI  +    ++++   L   L  YPDI+
Sbjct: 65  ERLRQSLAPRISEIEADIEALMAYRDKPAGTVRITLSNHAMESVVWPKLAPILGEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +DN   +I  D  D  +RL + ++   +  R      +   A+P Y K    P + 
Sbjct: 125 LELSVDNSFRNIVEDGFDAGVRLGESLEKDMVAVRIGPDWRLVVVASPDYFKTRPVPTTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL +HN +     + +    + W    +      R+   L  N+   ++   + G GIA
Sbjct: 185 QELMQHNCV--NRRLDRIGGLYAWEFEKNNEEVRVRVEGQLTFNTDREMVGAALQGYGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+  V        L  I++D        Y  YP   +N          +  +
Sbjct: 243 FVPESYVATHLAEGRLTLILDDWTPKFAGYYLYYPSRRQNLPAFSVIMEALRER 296


>gi|160897111|ref|YP_001562693.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362695|gb|ABX34308.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 296

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V   GSF  AA +L +S   + + +  LE  +G +L  R  R  +LTE
Sbjct: 1   MDKLRNMEVFMAVVEDGSFAQAARRLDISAVMVGKHVQQLEAHLGARLLQRTTRRHSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  + +V+ +L   +  ++ S   P G LRI+    LG +++   + ++ L  P 
Sbjct: 61  VGRSFYEDSRQVFEQLRWAESAVERSRSAPQGLLRISAPTTLGNHVIAPLVADYQLANPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L +   D+  +  D A+R+  P+    L+ R L    M   AAP YL+    P 
Sbjct: 121 VRVDLQLSDSMADLVGENIDVAVRIG-PVGGEGLVARPLQPYRMVIAAAPSYLRRRGHPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L +H+ +++   + +   ++         +  P  + L+ NS   +    + G G+
Sbjct: 180 GVDDLARHDCLSYA--VWQRRSEWILRGDGSGSVQWPEDARLRCNSGDGLRHAALRGLGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L P+ ++  +     LV +++D +     V+  Y    +   KL  F + + 
Sbjct: 238 ILQPEVLLAADMAAGRLVPVLQDCVPLPRPVHLVYLPDRRQLPKLAQFVDHMV 290


>gi|264678167|ref|YP_003278074.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262208680|gb|ACY32778.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 312

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 126/292 (43%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA+  S T+AA  + ++ +++S+ I  LET + ++LF R  R L LTE G    
Sbjct: 9   LAAFEQVAQHRSLTYAAHAIGVTPAALSQTIKKLETRLDVRLFDRTTRSLNLTEAGRIYL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S     L     +LQ  +    G LR+  +   GQ L++  L EF  ++P I ++L+
Sbjct: 69  ERISPALTNLREATEDLQLQAGVEGGTLRLTISHPAGQVLVEPMLAEFFAMHPHIHVELV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+  +DI  +  D  IR  + ++   +       + M   A+P YL+    P    EL+
Sbjct: 129 YDDGFVDIVREGFDVGIRNGESLEGDMVAVPLTQDLTMCFGASPAYLRTHGTPEHPDELE 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I +       +  + W   +D  + E  +S  L VN   + M+  + G G+     
Sbjct: 189 QHLCINYRMSSSGAL--YKWEFNIDGKLSERSVSGPLTVNHSDTAMRAALDGIGVITGWR 246

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             + D      L+ +++         Y  YP       K + F +F+    +
Sbjct: 247 ESMTDAFNTGQLIEVLKPYWASFPGFYAYYPHRTHLPLKTRIFLDFLVQHVQ 298


>gi|240138323|ref|YP_002962795.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
 gi|240008292|gb|ACS39518.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
          Length = 310

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 122/297 (41%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + +R+F   A +GSF+ A   L LS S IS +I  LE  +G  L  R  R + LTE 
Sbjct: 2   LSLESVRIFMRAAETGSFSAAGRSLRLSPSVISYRIQTLEEHLGCLLLTRTTRRMNLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++   +E  +  ++     P G L++   + LG+ ++   +  F   +P+ 
Sbjct: 62  GRVFYDRCLDIAASVERAEKSVETQGAAPRGTLKVTAPLTLGRRVVAPLIPGFRERHPEA 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+  +  D A+RL + ++ S+   RK+  I     A+P YL     P S
Sbjct: 122 DVHLRLSDHLLDLVQEAVDVAVRLAQ-MRDSTFTLRKVADIERILCASPAYLAEHPAPES 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L  H  +          E F W L   D  +  P    +  +    + ++ + G GI
Sbjct: 181 PADLIDHACLLLRF---PGSEQFRWSLRDGDEVVTLPVAGPIDADDGDVLTEWALQGQGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L P + V     +  LV ++        ++   YP       + K F        R
Sbjct: 238 VLKPVFEVAPYLADGRLVPVLPGTPPTPVSLGVVYPSRKMLPARAKTFVEMTTEALR 294


>gi|189023320|ref|YP_001934088.1| LysR family transcriptional regulator [Brucella abortus S19]
 gi|260546339|ref|ZP_05822079.1| bacterial regulatory protein LysR [Brucella abortus NCTC 8038]
 gi|189018892|gb|ACD71614.1| Bacterial regulatory protein LysR [Brucella abortus S19]
 gi|260096446|gb|EEW80322.1| bacterial regulatory protein LysR [Brucella abortus NCTC 8038]
          Length = 297

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA +GSFT AA QL +SQS++S+ I  LE  VGI+L  R  R ++ TE G
Sbjct: 5   NLRDLNAFVAVAETGSFTRAAAQLGVSQSALSQTIRNLEERVGIRLLNRTTRYVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++ +   ++ E   +PSG + ++      Q++L   L+ FL  +PDI 
Sbjct: 65  ERLLAQVGPALAEIASGFAQIGELRERPSGTVLLSADEYAIQSVLWPALERFLAEFPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  D    D+  +  D  +R  K +    +  R    I M   A P +L+   +P   
Sbjct: 125 IELTTDYGRSDVVRERQDAGVRRGKLVSRDMIALRISPDIPMATVATPAFLEKGGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   E F W  +   + I       L   S   ++Q C  G G+A
Sbjct: 185 QDLSDHDCINL--RLPTHGEFFAWTYSRHGKDIRITTQGRLVFTSIAQVLQACFAGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP        ++  LV ++ D        +  YP   ++   L A    +
Sbjct: 243 YLPRDYAARHIESGALVEVLADWRKTFEGYHLYYPNRRQHPPALAALIEAL 293


>gi|153216987|ref|ZP_01950751.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124113994|gb|EAY32814.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
          Length = 315

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  
Sbjct: 8   QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +   Q E+++   + +G +R+  +   G   +   L++    YP++ +++
Sbjct: 68  YAQCRELLTIVTNAQSEMEDQRDEVTGLIRLGLSQSFGTLHVLPALEQLRQQYPELNVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++        A+P YL     P     L
Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASPDYLLRYGSPTEPMAL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + +        +   W  + D      +++    V+   ++    V G GIA L 
Sbjct: 187 MEHNCLIYRS---WERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            Y+++D      L++++ +         Y  YP       K  A   FI  + 
Sbjct: 244 TYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRL 296


>gi|187920194|ref|YP_001889225.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718632|gb|ACD19855.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 306

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 7/295 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L     VA +G F+ AA++L ++ SS++R +  LE  +G  L  R  R ++LT+ G   
Sbjct: 6   ALNTLLEVADAGGFSKAAQRLGVATSSVTRLMDSLEASLGTALLTRTPRKVSLTDAGIAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +V   L      + +S   P G LRI+      +  L  +L  FL   P + + +
Sbjct: 66  VEQVGKVLDDLAEADESVFDSGASPVGSLRISVPSTYSRLRLAPHLAAFLAANPRLFLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +   D+++D  D AIR+ +P + ++LI RKL     +  A+  YL+ C  P + Q L
Sbjct: 126 VVADHFADLALDRIDIAIRIGRPDRDANLIVRKLADNPRYVVASHAYLERCGTPQNPQAL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D H  +                              L  NS   + +  + G GIALLP+
Sbjct: 186 DSHECLRVAYGGGYRSRQVWTFRRDGAEERVEVRGHLLSNSLDMLYEAVLAGQGIALLPE 245

Query: 247 YIVK---DNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++V     +  L+ + E+ +         VY  Y    +++ K++A   F+  + 
Sbjct: 246 WLVSAEIRSGRLMHLFENFVASPHPGDAIVYAAYLPNRRHSSKVRALVQFLEARL 300


>gi|90423499|ref|YP_531869.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105513|gb|ABD87550.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 300

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 129/300 (43%), Gaps = 8/300 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +  +L  F  VA   SFT AA QL LS  ++S  +  LE  + ++LF R  R + LTE
Sbjct: 3   RVELAELAAFVAVADHLSFTRAAHQLGLSLPTVSLTVKALEDRLDVRLFNRTTRSVALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +   ++     +     KP G LR+A +      +L   +K FL  YP+
Sbjct: 63  AGERLLAEIQPLLQGVDDAIESVNRYRDKPIGTLRLAVSRTFATRVLAQLIKPFLDEYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L +D+ +IDI     D  IR+   ++    +        +   A+P YL     P+
Sbjct: 123 IRLDLEIDDTNIDIVRHRFDAGIRVGDMVERDMKVISVFDPFRLIVVASPVYLAGKPAPV 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  HN I +       ++ +  +    R         L VN +  +M   + G G+
Sbjct: 183 RPEDLRGHNCIRYRLPHDGSIQRW-IVERSGRQTEIAVEGSLIVNDFDLMMGAALDGVGV 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A L + +++    +  L+R++         +Y  +P   +    L  F  FI    ++W+
Sbjct: 242 AYLSEPLIQGALADRKLIRVLPGWGHTLQGIYLYHPSRRQVPMPLLVFLRFI----KEWR 297


>gi|191168818|ref|ZP_03030593.1| HTH-type transcriptional activator TtdR [Escherichia coli B7A]
 gi|190901147|gb|EDV60921.1| HTH-type transcriptional activator TtdR [Escherichia coli B7A]
          Length = 310

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+         I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEFPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|226945602|ref|YP_002800675.1| LysR family regulatory protein [Azotobacter vinelandii DJ]
 gi|226720529|gb|ACO79700.1| Regulatory protein, LysR family [Azotobacter vinelandii DJ]
          Length = 301

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 123/283 (43%), Gaps = 4/283 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT AA  L LSQS++S  +  LET++G +L  R++R ++ TE G +L 
Sbjct: 13  LVAFVAVAREKSFTRAAAHLGLSQSAVSHAVRALETKLGARLLARNSRTVSPTEIGERLL 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +    +++     L      P G +R+  +    +++L   LK+FL  YP IQ++L 
Sbjct: 73  QSVAPQLEEIDAEMSALSALRDSPMGTIRVTASDHAIRSVLAARLKKFLPKYPGIQVELF 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            DN  +D++ +  D  +RL + +    +  R    I     A   Y  N   P    +L 
Sbjct: 133 ADNGLVDLAAERFDAGVRLGEIVAQDMIAVRIGPDIRFAVVATKGYFANHPLPGKPDDLM 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN +         +  +       R +       L  NS    +   + G G+A +P+ 
Sbjct: 193 QHNCVNLRLPTYGGLWAWE-FEKAGRQLNVRVNGQLTYNSIYDCLDAAMEGLGVAYVPED 251

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +        +LV ++ED        +  YP   + +G +    
Sbjct: 252 MALPYIRTGHLVSVLEDWCPYWSGYHLYYPSRRQPSGAMSLLI 294


>gi|313202307|ref|YP_004040965.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441623|gb|ADQ85729.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 292

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 125/291 (42%), Gaps = 7/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RV   V   G F  A+ QL +S ++++R +  LE ++G++L  R  R +  T+ G + +
Sbjct: 1   MRVLVAVGEQGGFAAASRQLDISPAAVTRAVGALEEQLGVQLVQRTTRNVRFTDAGLRYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +          + +P G L +   +  G+  +   + E++  YP +++   
Sbjct: 61  DDARAILQSIAEANEAASGINAEPRGTLSVTAPVLFGRMFVMPTIIEYMQRYPQVKVNAN 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  ++  +  D AIR+   +  SSL   K+  +     A+  YL+    P    +L 
Sbjct: 121 FVDRVTNLVEEGMDVAIRIGN-LPDSSLRAVKVGQVRRVLCASHAYLEAHGTPQIPADLM 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H++I    L P+    F      D P        L V S  + +   + G GI  L  Y
Sbjct: 180 QHSMIVSNALSPRVEWRFE---GGDEPELVQINPRLVVTSNDAALSAAIGGLGITRLLSY 236

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V+   +  +L  ++E      + V+  + E    + K++AF + +  + R
Sbjct: 237 QVRSEVERGSLRLLLETFEESPWPVHVVHREEKYGSSKVRAFIDLMVERLR 287


>gi|153828077|ref|ZP_01980744.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148876486|gb|EDL74621.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 312

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAANKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPTGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+   +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPVHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALTAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|117617569|ref|YP_855739.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117558976|gb|ABK35924.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 300

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 139/298 (46%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  V   GS++  A +  +S   + + + GLE  +G KLF++  R  TLTE
Sbjct: 1   MDRLTSMRIFTRVVDLGSYSAVASEEGISAQMVGKHVQGLEQWLGGKLFHKTTRQQTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  +L  T+   Q    +P+G+LRIA  +  G + L   L  FL  YP 
Sbjct: 61  LGQLFLARCQRVLEELALTESLTQHLLAEPAGRLRIAAPLSFGHHRLVPLLPAFLDRYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L  + +D+  +  D AIR  +P Q  +L+ R L+T H    AAP YL     P 
Sbjct: 121 LEVDLQLTPRWVDLVEEGVDAAIRTLRP-QDEALVARPLLTQHYRLCAAPDYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +          E + ++    +       S L++N + +++   + G+GI
Sbjct: 180 QPADLARHQCLH---GNWGEHERWQFVGEDGQSEEVRVASRLRINHWPALLTAALSGAGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +L P   V+++     L+ +++    P  T++F YP A +   K+    +F+     D
Sbjct: 237 SLQPADQVQEHIAAGRLLPLLDTYRIPDKTLHFIYPAARRQVLKITLLGDFLAEALAD 294


>gi|89067638|ref|ZP_01155092.1| hypothetical protein OG2516_00514 [Oceanicola granulosus HTCC2516]
 gi|89046608|gb|EAR52663.1| hypothetical protein OG2516_00514 [Oceanicola granulosus HTCC2516]
          Length = 294

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LR F  V+R GSFT+AA++L+++QS++SR I GLE  + ++LF R  R + LTE G
Sbjct: 7   SLNALRTFEAVSRHGSFTNAADELNVTQSAVSRMIKGLEEHLELQLFERAGRQIRLTEDG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  S+    LE    EL ++     G L I      G   L   L  F+ L+P++ 
Sbjct: 67  VYYSEKISKAMDILEVASRELIDTKA-GRGTLSIGMLPTFGTKWLLPRLGSFMQLHPELT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   + ++D + +  D AIR              L++  +    +P  +         
Sbjct: 126 VDVTSSDGELDFADERIDVAIRFGYG-NWPGARAEPLMSEELQVVCSPRIMDGPYPLTDY 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+LI       +     +WL  V     E     L++  +  ++Q    G GI L
Sbjct: 185 AQLRRHSLIAHSS---RPGTWSHWLQAVG-ASTEGYDKGLRLEHFYMVLQAAKSGLGIGL 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP Y+  D+    +L       +      Y   P    +  +++AFR ++  +
Sbjct: 241 LPSYLAADDIANGSLTAPFPVRVVSPGGYYLVTPWDKTDLPRVQAFREWVLGQ 293


>gi|167584731|ref|ZP_02377119.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 303

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 134/295 (45%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + ++      GSF+  A +  + Q ++S+ +S +E ++G++L  R    LT T+
Sbjct: 1   MDSLQSMWLYTRAVELGSFSAVAREEKIGQPTMSKVVSAMEKQLGVRLLQRTTTSLTPTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +    ++         +++  + +P GKL ++  + LG+  L   + EFL  YP+
Sbjct: 61  EGRRFYERCKQMLETYADAVADVRGQAQRPVGKLTVSAPMGLGELRLNALVLEFLAQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L L ++ ID+  +  D AIR+   +   + + R +        A P YLK      
Sbjct: 121 IEVELNLTDRIIDLVEESIDVAIRIGNALPPDA-VARNVAWSPRVLVATPDYLKRAPRIR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H+ + +         +   L+     I  P     +VN+ +++ +  + G G+
Sbjct: 180 RPEDLLRHSFVGYARAAVGAQLE---LSKGAETIVVPTNGRYRVNNSVALRECYLAGIGL 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              P ++V+   D   LVR++     P  +V+   P       + + F  F+  +
Sbjct: 237 GSAPAWVVQDLIDAGQLVRVLPKWAIPPHSVHLITPSRRYPPLRARVFLQFMAER 291


>gi|152988405|ref|YP_001347373.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963563|gb|ABR85588.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 306

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 137/292 (46%), Gaps = 12/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D   +F  V    SFT AA+ L + +S++SR+I+ LE  +G++L  R  R L LTE 
Sbjct: 1   MGLDDALIFTRVVEYHSFTQAAQSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++ H     +  + +    PSG LRI + I+ GQ  L G L +F+  YP I
Sbjct: 61  GQAYYERCRQIMHDFAEAEQAVMQLQQAPSGLLRITSPIEFGQMFLAGLLGDFMRQYPLI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++ L ++ +D   +  D  I + +P + S+L+ R+L+       A+P YL     P S
Sbjct: 121 TAEVELASRSVDPLQEGVDIVIMVGQP-EDSTLVARRLLATGRWLCASPGYLAEHGTPGS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL  H  +       +      W  + D     P    L  N+     +  V G+GIA
Sbjct: 180 VAELAGHRAVLLSTDSQRY-----WPLSGD---SLPCQRVLSCNNITFAREAVVAGAGIA 231

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LP  I +++     LVR++ DV  P   +Y  YP       K+KAF +F+ 
Sbjct: 232 ALPALICEESVRNGRLVRLLPDVPLPVGELYAVYPSRRFQAMKVKAFLDFLI 283


>gi|157144708|ref|YP_001452027.1| hypothetical protein CKO_00434 [Citrobacter koseri ATCC BAA-895]
 gi|157081913|gb|ABV11591.1| hypothetical protein CKO_00434 [Citrobacter koseri ATCC BAA-895]
          Length = 300

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 141/295 (47%), Gaps = 10/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + +R+F  +   GSFT AAE L LS+  +SR+++ LE +V  +L  R+ R L++T+ 
Sbjct: 1   MHLEDIRIFVTIVNMGSFTAAAEHLSLSKQFVSRRMAALEKKVSARLLVRNTRKLSVTDT 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   +  +     K +G  RI+  +  G   L   + EF   +P++
Sbjct: 61  GQAFFHHARRILEEVHEAEQVISARQQKLAGSFRISLPMTYGIRRLAPLIVEFQAAHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + + ++++ +D+  +  D  +R+   +  S+LI R L  + M   A+P YL+    PL+
Sbjct: 121 TVHIDMNDRYVDVVGEGYDMVLRIGN-LMDSTLIARCLGKLPMVICASPDYLRLHGTPLA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL +H+ + +G         F W L   + P        L  N+   I +    G+GI
Sbjct: 180 PSELAQHSCLLYGREG-----QFGWKLTEENSPNTYAVRGNLSSNNGDVIREAAEAGAGI 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ALLP +IV+D+     LV+I+ D   P  T+   YP+  + +   +    F+  +
Sbjct: 235 ALLPLFIVEDSLQQGALVQILSDYSPPPLTISALYPKHRQRSAVTRILLPFLAER 289


>gi|153831626|ref|ZP_01984293.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|156976216|ref|YP_001447122.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|148872136|gb|EDL70953.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|156527810|gb|ABU72895.1| hypothetical protein VIBHAR_04988 [Vibrio harveyi ATCC BAA-1116]
          Length = 309

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +       E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 72  YDQSIAMVNAAQQAVELSAEDHAEPTGALTVAAPEAFLNSVLQPFVLPFLDRYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+     D A +L       +L+ +++   ++   A+P YL     P    EL
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDK-PDENLVLKEISKTNLVLCASPDYLAKHGMPAHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++H+ I   +     +  F      +            VN     +     G GI +  D
Sbjct: 191 EQHDCIYLAENDKDNIWSF---FKEEAFHSIAVSGRYAVNHSQMRLNGVKSGLGIGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++KD      +V ++ D +  S     +   Y +      +L+ F +F+  
Sbjct: 248 FVIKDALEQGEVVEVLPDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFVKE 299


>gi|170736666|ref|YP_001777926.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818854|gb|ACA93436.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 328

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 125/298 (41%), Gaps = 6/298 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  +A +G+FT   ++L ++ + +SR ++ LE  +GI+L  R  R + LTE
Sbjct: 1   MDLIQSMQAFVTLADAGTFTETGKRLGITTAHVSRLVASLEHRLGIRLLNRTTRSMCLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   ++ ++ E +++ V P G+LR   +  +  + +   + +F   YPD
Sbjct: 61  AGERYLARARDITLAVDASEREARDARVHPHGRLRAHCSASIANHFVIPLIGQFQARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L      +  D  D A+     + SS  +   +  I     A+P YL     P 
Sbjct: 121 VSVDLTLAPHLPKLVRDSYDVAVIAMPSLPSSEQVAIDVGRIRSVLCASPAYLDAHGMPD 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S   L  H  +    + P   E    L              +  +   S+      G+GI
Sbjct: 181 SPGALVHHRCVQL--VAPAYHERIWTLWNGAEAQTVDVDPSMTADVAASLAIAVREGAGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LLPD++   +     LVR++ D       V+  Y        K +A+ +F+    RD
Sbjct: 239 GLLPDFVAAADLRSGALVRVLPDYQAEEIGVFLVYASRQHLDAKTRAWVDFMKAALRD 296


>gi|226943087|ref|YP_002798160.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226718014|gb|ACO77185.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 304

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  V R   F  AAE+L LS + +S++I  LE+ +  +L +R  R + LTE G +
Sbjct: 12  EDLRVFLTVIRKQGFAAAAEELGLSPAYVSKRIHILESTLKARLLHRTTRRIALTEDGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R    +   L+    EL ++   P G L I++T   G+N +   +      YP+++I+
Sbjct: 72  AQRWAVRILGDLDDLFDELSQARQTPRGLLHISSTFGFGRNHVAPAISLLAERYPELEIR 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +DI  +  D  IR+   +     I ++LV+      A P YL     P S+ +
Sbjct: 132 LEVFDRVVDIVGEGFDLEIRVGDDLPGQH-ICKRLVSNKRVLCATPGYLARRGTPASLDD 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ +   +           L+   +P        L  N+   ++++ + G GI L  
Sbjct: 191 LQHHDCLVLKERNNPFGIWH--LSRNGKPASVRVSGPLSSNNGEIVLEWALHGRGILLRS 248

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + VK   +   LV+++ D  + S  V+  YP  L N+ KL+    F+
Sbjct: 249 LWDVKPLLEQGRLVQVLHDY-SQSANVWAVYPTRLSNSAKLRVCVEFL 295


>gi|325920459|ref|ZP_08182386.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325549039|gb|EGD19966.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 302

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 124/289 (42%), Gaps = 8/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + L  F   ARS +FT AAE L +S+S++ + I+ LE  + ++LF+R  R + LT  G
Sbjct: 6   TLNGLVTFVTAARSRTFTEAAESLGISRSAVGKAIARLEARLRVRLFHRTTRRIALTADG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  +    ++ + +  L   S  P+G+LR+      G++++   L      +PD+ 
Sbjct: 66  ESYFATCAAALEEIASAEAGLASQSSLPTGRLRVDMPSSFGRHVMLPILLRIGAAHPDLH 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L  ++  ID + +  D  IR      S  L+ RKL    +   A+P YL     P +I
Sbjct: 126 YTLSFNDHLIDPAQEGIDLTIRFGGVESSGGLVARKLGRQRLVLCASPAYLAAHGTPRTI 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I    +  +  +   W        G+       Q+N   +++   + G GI 
Sbjct: 186 NELQAHRSI----VGFRNGQPVGWRFGDKVTAGDFVPQGTHQLNDGDAVIDAAIAGLGIC 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P  +V+    +  L  ++E+       ++  +P       K++   +
Sbjct: 242 QMPISLVRPHIQSGRLQLVLEECTAYCIEIFALWPRTRHLRPKVRYVVD 290


>gi|281177479|dbj|BAI53809.1| putative transcriptional regulator [Escherichia coli SE15]
          Length = 308

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 142/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 2   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 61

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G  L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 62  SLTEEGQHLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 122 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAIPVSPLIKLVTVASPDYLKE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 181 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVVGGNEEFEIEVSGKYISNDDESMIRM 240

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 241 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 300

Query: 292 LK 293
            K
Sbjct: 301 EK 302


>gi|258626466|ref|ZP_05721307.1| HTH-type transcriptional regulator [Vibrio mimicus VM603]
 gi|258581248|gb|EEW06156.1| HTH-type transcriptional regulator [Vibrio mimicus VM603]
          Length = 302

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 122/297 (41%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +  R F  V   GSFT AA  L L+Q  IS+ ++ LE +VG KL +R  R + +T
Sbjct: 1   MELDLNAARCFVKVVELGSFTQAANLLGLTQPGISKAVNRLEAQVGAKLIHRSTRQVRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    + +  E    EL+ S   P G L+++    L  +L+   +K     YP
Sbjct: 61  EDGQLFMKRIQPLIYGFEEAHSELKFSKTTPVGCLKLSAPSALSHSLIVPIVKLLTERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I+L L ++ + +  +  D  +R    I    L+   L        A+P YL     P
Sbjct: 121 ELRIELSLTDQKVHVFDEGYDAVLRFGS-IDDERLVAFALQDAEWVTVASPEYLAKQGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLG 238
               EL   N +              W   +D    E R  +  +  +    ++   + G
Sbjct: 180 HHPDELRNFNCLHVK--ARSQTNTLPWRFRIDGKGIEYRQLVGNVCFDHGDPLIDAALQG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G+  +   +  D   N  L  ++ D    + + +  YP + + + KL   R  + L
Sbjct: 238 LGVVQVLRCVTADKLANGELKEVLTDFRPQAHSFHLLYPPSRQRSAKLTVLREALIL 294


>gi|222083034|ref|YP_002542399.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221727713|gb|ACM30802.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 303

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 12/294 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++LR F  +A +   T AA +L +S+S +SR+++ LE  +G++L  R  RG  LTE 
Sbjct: 1   MDIEELRTFVEIADATGVTQAARRLGVSKSLVSRRLARLEQFLGVQLLARTTRGAFLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      +++  + E  +     S     G+LR+A  +  G       L +    +P +
Sbjct: 61  GATFREHAAKICSEFEVAREATLPS-GDLRGRLRVAAPLSFGPTHFAPILSQMARRHPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI     ++ +D+  +  DCAIRL   +Q S+LI R++ +I     A+P Y++    P++
Sbjct: 120 QILSSYTDRFVDLVGEGFDCAIRLGH-LQDSALIARRVGSIFGILVASPEYIEAHGAPVT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             E+  H ++   D   + M+        D+ +          +S +S++   + G GI 
Sbjct: 179 PDEIVNHQVVMRDDERWQFMDG-------DKIVTVRPQGRFVADSGISLVSATLDGIGIG 231

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP+ +V D+     LV IM     P   ++   P     + K++     +  +
Sbjct: 232 YLPEPLVADHVRSGALVPIMTRHPIPPAGMFVVRPPGQHPSRKVRILTEMLIER 285


>gi|299769860|ref|YP_003731886.1| transcriptional regulator [Acinetobacter sp. DR1]
 gi|298699948|gb|ADI90513.1| transcriptional regulator [Acinetobacter sp. DR1]
          Length = 299

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 140/297 (47%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYSLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QL++ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL    +
Sbjct: 121 EIRLQLMVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGD 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
             + ++L +H +++  +   + ++    L   D    + ++S  +   +   + Q     
Sbjct: 181 IKNPEQLSEHRILSLSE---EHLDQQFILHGPDNQQKKVKVSPTVMGTNIYMLAQLASQN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIALLPD   +D   +  LV+I+ D        +  YP        ++ F +++  
Sbjct: 238 CGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYPSRRGLLPAVRVFIDYLVE 294


>gi|283785539|ref|YP_003365404.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282948993|emb|CBG88596.1| LysR-family transcriptional regulator [Citrobacter rodentium
           ICC168]
          Length = 305

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 136/289 (47%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+F +VAR   F   A+++ +S + +S++I+ LE  + + L +R  R +++TE+G 
Sbjct: 7   LNDLRIFMLVARRAGFAAVAQEMGVSPAFVSKRIALLEQSLNVTLLHRTTRRVSITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   ++    EL  +   P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYAWAQRILCDVDQMLDELSAARQVPQGMLRIISSFGFGRRVVAPALSALAKQYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  + ++ +D++ +  D  IR+   I + +LI RKL T +    A+P +L     P  + 
Sbjct: 127 RFDVADRLVDLANEGVDLDIRIGDDI-APNLIARKLGTNYRILCASPAFLARYGTPKQLN 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  +  +   +           L + +          L  N    + Q+C+ G GIAL 
Sbjct: 186 ELSAYPCLVIKERDHPFGVW--QLQSKEGQHAIKVTGALSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V D   + +LV ++ +   P+  ++  Y   L  + K++    F+
Sbjct: 244 SWWDVCDNIASGHLVHLLPEYYQPA-NIWAVYVSRLAASAKVRITVEFL 291


>gi|167622444|ref|YP_001672738.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352466|gb|ABZ75079.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 315

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 135/300 (45%), Gaps = 8/300 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA  L L+++++SR+++ LE + G++L +R  R L LTE 
Sbjct: 2   IDLNRIQMFAQVVEQGSFTRAANALGLTKATVSRKVAELEADAGVQLLHRTTRALKLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      + +   L+  + +L        G L+I   I++GQ        +FL LYPDI
Sbjct: 62  GADYFHRVNRILTDLKNAEDQLSARQQTIKGHLKIVCPIEMGQLYFGRVFAQFLALYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++        L    L+       A+P YL    EP +
Sbjct: 122 TIEAELTNRQVDVIAEGVDLLFQITAE-TDDRLKSYALINTPKILMASPEYLDKFGEPTT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  I      P    ++      +    EP  S L+ N+   + +  + G GIA
Sbjct: 181 PEQLQEHQCIRISS--PHIDGNWTLFNGKEWVTIEPE-SRLETNNITLMREAALEGLGIA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA-RDWK 298
            +P  I  D      LV ++ D       V    P+ +    + + F  F++     +W+
Sbjct: 238 AIPLVIANDALEKGKLVTVLNDFPMKQSLVTMSMPQRVYLPRRYRVFIEFLYQALFNNWQ 297


>gi|124385436|ref|YP_001026863.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126448309|ref|YP_001079850.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|124293456|gb|ABN02725.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126241179|gb|ABO04272.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
          Length = 320

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E       P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHG-ATPQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 126 DIVLSDSLVDPLDERSDIAIRSGA-LDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+HN I                   +     P    L +    SI +  V G G+A L
Sbjct: 185 DLDRHNCIGLSGNAKAWP-----FVAEEGQRLLPSAGNLLLGDNESIREAAVSGLGLARL 239

Query: 245 PDYIVK---DNPNLVRIMEDVIT-PSFTVYFCY--PEALKNTGKLKAFRNFIFLKAR 295
             + V    D   LV ++E         +   +  P       ++ A  +F+  + R
Sbjct: 240 ARFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSE-HLPMRVHALLDFLKERIR 295


>gi|325277608|ref|ZP_08143191.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097260|gb|EGB95523.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 301

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 135/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F     +  F+ AA +L ++ SS++R +  LE+ +G  L  R  R ++LTE G++ 
Sbjct: 6   AMKMFVATVDAQGFSAAARRLGVAASSVTRLVDALESALGATLLNRSTRQVSLTEAGARY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    ++  L+     + +   +P G LR+   ++ G+ ++  +L  FL  +P +++ +
Sbjct: 66  YQRARGIFEALDEADASISDRGEEPVGVLRLCLPVEFGRRVIAPHLGPFLARHPALELDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  D+     D +IRL  P  S  ++ R L        A+P YL      L  ++L
Sbjct: 126 DLSDRIDDLLDGRYDLSIRLGDPAPSDEMVCRPLGRFQRWLVASPGYLAERGPLLHPRQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H  + F        +   W  T  +   E  +S  L+  +   + +  + GSGIALL 
Sbjct: 186 LEHPCLRF----RYGQKARPWRLTCGQESLELDVSGPLRSANADMLRETALAGSGIALLA 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNF 289
           D++V+++     L R+  +      T    +   Y    + + ++ AF  F
Sbjct: 242 DWLVREDVEGGRLQRLFPEWQANPGTANDCINALYLPNHRGSRRVSAFIGF 292


>gi|300704974|ref|YP_003746577.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299072638|emb|CBJ43988.1| putative transcriptional regulator, LysR family precursor
           [Ralstonia solanacearum CFBP2957]
          Length = 338

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D + VF     +G FT AAE+L LS+S++ + I+ LET +G++LF+R  R   LT
Sbjct: 7   MRGRLDGVAVFVEAVEAGGFTRAAERLALSRSAVGKAIARLETRLGVRLFHRTTRTQNLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +        +L   +  L     + +G+LR+   +  G+  +   L EF   +P
Sbjct: 67  EDGQVYYERCLRAIEELRAAESLLDSGKQEVAGRLRVTMPVLFGRYCVAPILLEFARQHP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +D+  +  D  IR     +++ L  R L T      AAP YL+   +P
Sbjct: 127 KLELELSFSDRPVDMIAEGFDLGIRNGALGEATGLCARPLATQPKVLCAAPAYLEMRGQP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +I+ L  H+++       +    + WL   T  R       S L+ +         V G
Sbjct: 187 DTIEALANHDVLIH----WRTGHPYPWLLPDTDGRLTEVRLASRLRFDDLEVTADAAVAG 242

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  LP ++V    D   L  + ED    S   +  +P       +++   + +  
Sbjct: 243 MGITWLPHWLVCHRIDAGALTVLWEDRPAASMDTHAIWPATDYMPLRVRLAIDTLVE 299


>gi|238761893|ref|ZP_04622867.1| LysR-family regulatory protein [Yersinia kristensenii ATCC 33638]
 gi|238700007|gb|EEP92750.1| LysR-family regulatory protein [Yersinia kristensenii ATCC 33638]
          Length = 308

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 125/294 (42%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T 
Sbjct: 1   MDQIQAMRIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++    E          ++P GK+RI     L +N++   L +F   YP 
Sbjct: 61  EGTLYYHRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPVLSDFYQRYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L  ++  ID+  +  DC +R   P +   L  R +        A+P YL+    P+
Sbjct: 121 ITLILGANDSTIDLLREGVDCVLRAWLP-RDEQLAARNIGQQPQITCASPAYLEKYGVPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H  + +   +        ++    +       S L V+   + +   V G G+
Sbjct: 180 SLDDLTGHQAVGYFSQLNNRDYPLEFIYQ-GKVENRVLPSILSVSGADAYIAAGVAGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P   ++       L+ ++  +  P   ++  YP       +++   +++  
Sbjct: 239 IQAPTTGIQHQLAQGELIEVLSHLPPPVMPLFIMYPPGRFLAPRVRVLIDWLIE 292


>gi|190575822|ref|YP_001973667.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190013744|emb|CAQ47379.1| putative LysR family transcription regulatory protein
           [Stenotrophomonas maltophilia K279a]
          Length = 301

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 131/289 (45%), Gaps = 9/289 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + L  F   ARSGSFT AA+ L +S+S++ + ++ LE  +G +LF+R  R + LT  G
Sbjct: 6   SLNGLVTFVTTARSGSFTEAADALGISRSAVGKAVARLEARLGGRLFHRTTRRIALTTDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   +    ++   +     S+  PSG+LRI      G+ ++   L      YPD+Q
Sbjct: 66  EAYYASCAAALEEISAAEA-CLGSAGLPSGRLRIDMPSSFGRLVVLPVLLRLCRQYPDLQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   +  +D   +  D  IR     Q+  L+ R+L    +   A+P YL+    P ++
Sbjct: 125 LTMTFTDHFVDPIEEGIDLLIRFGGLHQAEHLVARRLGRQRLVTCASPEYLQAHGVPRTV 184

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +EL +H  ++ F    P        + + +        +  Q+N   ++++  + G GI 
Sbjct: 185 EELAQHRSIVGFRHGQPVWWR----IGSEEDEGTFIPNAPYQLNDGDAVIEAAIAGLGIC 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P  +V+   D+  L  +++  +     ++  +P       K++   +
Sbjct: 241 QMPVSLVRRHLDSGALRSVLDAHMQRHIDIHALWPPTRHLRPKVRYVVD 289


>gi|149910810|ref|ZP_01899444.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149806144|gb|EDM66124.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 311

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 140/298 (46%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+  +++L+   V+  +   G+ + AA  L+LS++ +S  +  LET++G+KL  R  R  
Sbjct: 11  MNVSFEQLKSMVVYAQIVEQGTLSAAARHLNLSRAVVSYHLKKLETQLGLKLLNRTTRSF 70

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLTE G + ++   E+ H+ E    +++    +P G L+I   +++G  ++   L  F +
Sbjct: 71  TLTEAGQQYYQHCQEIAHQAEAANQQIENLKHEPEGLLKITCPVNVGLQIIVPALNMFKI 130

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P I++ +IL +  ++I  +  D AIR   P+  S L   KL+++     A+P YL   
Sbjct: 131 QFPKIELDIILTDDIVNIMQEGIDLAIR-GAPLVDSGLQALKLISMKTCLCASPDYLNKY 189

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P+S  EL++HN + +             L+   R         +  N+  +   +   
Sbjct: 190 GRPVSPTELNEHNWVLYKLSSSTLT-----LSKGTRAYSVRPKGSINTNNAAARTAFVEG 244

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GIA +P Y       +  L +++ D    +  +Y  +P     + K +   +F+  
Sbjct: 245 GHGIARIPLYDAAPKIASHKLEQLLSDYELSNIELYGVFPPGSAGSKKHRVLLSFLKE 302


>gi|218691525|ref|YP_002399737.1| putative DNA-binding transcriptional regulator [Escherichia coli
           ED1a]
 gi|218429089|emb|CAR10033.2| DNA-binding transcriptional regulator, efflux system [Escherichia
           coli ED1a]
          Length = 309

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 130/287 (45%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ IKL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQIKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++++++   G+GIA +
Sbjct: 183 DLSSHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P  +++ +     L  ++    +    VY  Y E  K   K++   N
Sbjct: 240 PLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 286


>gi|121604268|ref|YP_981597.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593237|gb|ABM36676.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 304

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 126/303 (41%), Gaps = 15/303 (4%)

Query: 1   MSFD-----WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           MS +        + VF  V  +GSF+ AA QL ++ S++SRQ++ LE  + ++L  R  R
Sbjct: 1   MSINNPLDHLPDMAVFARVVDAGSFSAAARQLGITPSAVSRQVARLEGALRVRLLERTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            L LTE G+  +     +              +    G +RI+     G+ ++   +  F
Sbjct: 61  KLRLTEAGTAAYTGCQAMVAAAREVLALSDTQTATARGLVRISMPKAFGRLVVHPLMASF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           L  YP++ +QL++ ++ +D+  +  D AIR+        L  R L+ I   A A+P YL 
Sbjct: 121 LQQYPEVDVQLVITDRTVDLFEESIDLAIRITDA-PPPGLAGRPLMRIRHLACASPQYLA 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P   ++L +H+ +  G+        F         +          N     ++  
Sbjct: 180 AHGTPGHPRDLARHSCLYLGEDERDRHWRFR---RAGDEVTLRVSGRYVANHSEVRLEGA 236

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNF 289
           +   GIA LP++  +       LV +++D    +      +  YP       +++ + + 
Sbjct: 237 LAHLGIASLPEFTARAALAAGELVTVLDDWEHATDYAGMAWLLYPPNRFLPARVRVWIDH 296

Query: 290 IFL 292
           +  
Sbjct: 297 LVA 299


>gi|327191988|gb|EGE58969.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 298

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 120/296 (40%), Gaps = 10/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + SF  A E+L +++S++S+ +  LE  +G+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARSFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G            ++      +++   +PSG LRI  +      L    L  F+   P
Sbjct: 61  EAGEVFFAAVRPSVRQVRDAMQTVRDMQARPSGLLRITVSSIAESFLSGTLLAGFMQACP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + + + DI     D A+RL + I+   +           A A+P YL+    P
Sbjct: 121 EIKLDITVTDDEFDIVEAGFDAAVRLGEVIEQDMIAVPVSEPQRQCAAASPAYLERHGGP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  I +          +      +R         +  N    +++    G+G
Sbjct: 181 RHPSELRDHACIGWRPRPDTAPYRWE-FTENNRDFDVAVDPAVTTNDMGMMIRLACAGAG 239

Query: 241 IALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I      +V+      D   LV ++ED   P    Y  YP   +   KL+A    I
Sbjct: 240 ITFG---MVETFQSYFDRGELVPLLEDFCPPFPGFYLYYPRRERQPLKLRALVEHI 292


>gi|262373863|ref|ZP_06067141.1| transcriptional regulator [Acinetobacter junii SH205]
 gi|262311616|gb|EEY92702.1| transcriptional regulator [Acinetobacter junii SH205]
          Length = 300

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 146/298 (48%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE+L  + S +SR +S LE+++ + L  R  R L LT
Sbjct: 1   MKSSIEELLAFITIVDTGSFIAAAERLGQTASGLSRSLSRLESKLEVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +      ++ + L   +  LQ S    SG +R+ +      +++   ++ F   YP
Sbjct: 61  QEGQQFLAHARKILNDLSAAEEALQRSDQDTSGLIRVDSAAPFILHVIAPLMRVFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+I+L  +++ ID+     D A R  + +  SSL  + +    ++  A+PHYLK    P
Sbjct: 121 NIEIELNSNDQVIDLLEHKTDVAFRFGE-LHDSSLHAKLVCKSRLYIVASPHYLKRMGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H+LI F     + +    W   VD      + + ++ +S  ++ Q C+ G G
Sbjct: 180 TQAKQLLQHDLIGFT----RPIHINQWPIKVDDEYFFAQ-AKIKASSGETVRQLCLRGQG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L ++ +  +     LV + ED I  S+ +++  Y +      +++ F  F+  + 
Sbjct: 235 IARLSEFEIWQDLNEGRLVALFEDQIEHSYQSIHAVYYQQEHLAKRVRLFIEFLSEQL 292


>gi|197295600|ref|YP_002154141.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195945079|emb|CAR57704.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 316

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   ++  + E  ++  KPSG+L +  T   GQ+ +   +  +   YP 
Sbjct: 61  AGQRYLDRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQSYVVPAVVRYRERYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S L+ ++L  +     A+P YLK    P
Sbjct: 121 VAVELTLSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGDVGSVLCASPAYLKARGTP 180

Query: 181 LSIQELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ +L  H  +     L P+     +      R   E  +   QVN   ++      G 
Sbjct: 181 RTVSDLAGHACLQIVTPLFPRDRWHLD--GPNGRETFELPLPDFQVNIADALGAALRAGL 238

Query: 240 GIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP         +  LVR++ D      TVY  Y        K++ F +F+  
Sbjct: 239 GIGSLPMSAALPALASGALVRVLPDYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 294


>gi|325131644|gb|EGC54350.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M6190]
 gi|325139008|gb|EGC61555.1| transcriptional regulator, LysR family [Neisseria meningitidis
           ES14902]
          Length = 303

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 139/289 (48%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA  L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAAGALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +       + ++      +  +         ++ ++ L + +    G+ I   P +
Sbjct: 186 GLPAVLPTYTNQQKLDLTR--KSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPLW 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + +    +LVR++ +   P+  +   Y +    + K+++F +F+  K
Sbjct: 244 AAEHDLRCGSLVRLLPEYTVPTDRLNAVYADRAFLSAKVRSFIDFLNEK 292


>gi|317406694|gb|EFV86857.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 302

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 137/301 (45%), Gaps = 9/301 (2%)

Query: 1   MSFDW--DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+ D     LRVF  V R+ SF+ AAE L +S + ++++I  LE  +G  LF+R  R + 
Sbjct: 1   MNNDLLPADLRVFNAVVRASSFSRAAEDLGMSAAYVTKRIRLLEASLGTPLFHRTTRRVV 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           ++E G +++     +   +E    E+  +  +P G LRI ++   G+ ++   L  F+  
Sbjct: 61  VSEAGERVYHWAQRILDDVEHLVEEVGVTRREPRGLLRICSSFGFGRRVVAPALSAFVSR 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P +Q++  + ++ +D++ +  D  +R+   I +  +I RKL   H    AAP YL    
Sbjct: 121 HPAVQVRFEVFDRLVDVAAEGYDLDVRVGDDI-APHVIARKLAANHRLLCAAPSYLAERG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P  + +L  H+ +   +           +   +R         L  N+   ++Q+ V G
Sbjct: 180 APRKLDDLAAHDCLVIKERDHPFGVWR--MRRGEREHTVKVRGPLSANNGEMVVQWAVDG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI L   + V        LV ++      +  ++  YP  L  + K++   +F+    R
Sbjct: 238 RGIILRSAWDVGPLIAAGKLVPVLPQYRQEA-NIWAVYPARLNASAKVRVCVDFLEAHLR 296

Query: 296 D 296
            
Sbjct: 297 Q 297


>gi|197295403|ref|YP_002153944.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195944882|emb|CAR57489.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 301

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 131/301 (43%), Gaps = 11/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++
Sbjct: 1   MDKFSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     V  +L      + +    PSG LR++  +  G   L  ++  F+  +P 
Sbjct: 61  AGAVYYARAKRVLGELADADALVADRGDAPSGPLRVSVPVAYGLRRLAPHVAAFVARHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+     D AIRL     ++ ++ R L T   +  A+  YL     P 
Sbjct: 121 LDLDLQLTDERVDLVSARIDVAIRLGDAAPTAEVVARPLGTFRRYVVASRAYLDAHGTPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  H  + F   + +    F       R         L+ N    + +  + G+GI
Sbjct: 181 TPAELVDHACLRFHFGVDQQTWTF---VGAPRTTQVVVTGRLKSNHSEVLREAALDGAGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD++V    +   L R+ +       +    +   Y    + + ++ AF +F+   A
Sbjct: 238 ALLPDWLVDTDLEAGRLQRLFDQYDVTPGSARAVITALYLPNQRGSKRVTAFIDFVESLA 297

Query: 295 R 295
           R
Sbjct: 298 R 298


>gi|171319247|ref|ZP_02908363.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095549|gb|EDT40513.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 345

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 141/291 (48%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSFT AAE+L + + ++SR +  LE ++  +LF R  R   LT +G +    
Sbjct: 35  AFVAVASEGSFTKAAERLGVGRPAVSRNVQKLEAQLSTRLFQRTTRTTELTCEGRRFFEN 94

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +   ++     ++ E     P G +RI++ +  G+ ++   L++F   YPDI I L+L
Sbjct: 95  CHQGVAQIVEAMNDMLELRQGPPRGVIRISSAVGFGRKIVAPLLEKFAHAYPDIIIDLLL 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++ ID+  +  D + R  + I+ SS+I R+L+ + M   AAP Y+     P  I +LD+
Sbjct: 155 DDRPIDLVSERIDVSFRNGR-IEDSSIIARQLIPMQMALCAAPSYVARYGLPQRIGDLDR 213

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I F     +    F W   VD  + +    S L  N    +++  + G+GIA +  Y
Sbjct: 214 HECINFRFASGRV---FEWEFNVDGRVQKYLPTSRLTFNDADLVLRAVLNGAGIAQMAGY 270

Query: 248 IVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++D+     LV  +   +      Y CY        +++ F +F+  + R
Sbjct: 271 QIRDHLASNELVVALAKHVPEDRGHYICYLSRQHLPTRIRIFVDFMTERIR 321


>gi|4928923|gb|AAD33772.1|AF139107_2 hypothetical transcriptional activator [Pseudomonas aeruginosa]
          Length = 306

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 84/295 (28%), Positives = 136/295 (46%), Gaps = 12/295 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D   +F  V    SFT AA+ L + +S++SR+I+ LE  +G++L  R  R L LTE 
Sbjct: 1   MGLDDALIFTRVVEYHSFTQAAQSLGMQKSTVSRRIALLEERLGVRLLNRTTRKLRLTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++ H     +  + +    PSG LRI + I+ GQ  L   L +F+  YP I
Sbjct: 61  GQAYYERCRQIMHDFAEAEQAVMQLQQAPSGLLRITSPIEFGQMFLASLLGDFMRQYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             ++ L ++ +D   +  D  I + +P + S+L+ R+L++      A+P YL     P S
Sbjct: 121 TAEVELASRSVDPLQEGVDIVIMVGQP-EDSTLVARRLLSTSRWLCASPDYLAAHGTPTS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L  H  +       +      W  + D     P    L  N+     +  V G+GIA
Sbjct: 180 VAGLAGHRAVLLSTDSQRY-----WPLSGD---SLPCQRVLSCNNITFAREAVVAGAGIA 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LP  I  +   +  LVR++ DV  P   +Y  YP       K+KAF +F+  + 
Sbjct: 232 ALPALICAESVHSGRLVRLLADVPLPVGELYAVYPSRRFQAMKVKAFLDFLISRL 286


>gi|240947910|ref|ZP_04752344.1| LysR protein [Actinobacillus minor NM305]
 gi|240297773|gb|EER48220.1| LysR protein [Actinobacillus minor NM305]
          Length = 296

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 130/294 (44%), Gaps = 4/294 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + LR F +VA++ SFT  A QL +S++++S  I  LE+ +G+KLF R  R +  T
Sbjct: 1   MQENLNDLRTFLLVAQTNSFTKVAAQLGISRAAVSYTIGQLESRLGMKLFNRTTRSVATT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L +  + ++  ++    ++ +S  +  G LRI  T++   ++L    + F   YP
Sbjct: 61  DAGEQLFQQIAPLFDDIDNRLSQILDSQNQKRGTLRINGTVNAIASVLWNKFQAFSKHYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L ++ + +DI  +  D  IR    +    +  R          A+P YL     P
Sbjct: 121 EITLELAVEMRFVDIVAERFDAGIREGAHVDLGMIAVRVSDDFTQSYVASPDYLAKHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  +L  HN I         + D+ +   T              VN+  + +Q  + G 
Sbjct: 181 ETPDDLVNHNCIRLRLPTHGGLLDWEFQHPTTGERFKRAVQGNFIVNNPPTALQAALDGV 240

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI+      ++       LVR++ D        +  +P    N+  LK    ++
Sbjct: 241 GISWEMTNEIEPFVKAGKLVRLLPDWECDYQGYHLYFPNRTANSPLLKELVAWL 294


>gi|148975331|ref|ZP_01812255.1| putative transcriptional regulator, LysR family protein
           [Vibrionales bacterium SWAT-3]
 gi|145965255|gb|EDK30505.1| putative transcriptional regulator, LysR family protein
           [Vibrionales bacterium SWAT-3]
          Length = 310

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 69/302 (22%), Positives = 125/302 (41%), Gaps = 17/302 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L LS ++++ ++  LE   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMAMFVSIVKHQGLAAAGRELGLSPATMTARLQALEERYGVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+   +   +  +Q    +  G L+IA   D+G+  +   L EF   YPD
Sbjct: 61  SGELYHKACLEILDNVSEAENLIQNGVKEVKGPLKIAAPKDIGKQYILPILSEFCQQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +I+    D  IR  + +  SSLI R+L        A+P YL     PL
Sbjct: 121 VIPYLYLNDNLSNIAESGMDVVIRYGE-LVDSSLISRRLSPSRRVLCASPEYLAKHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + Q+L  H+ +    ++    E   W     D       +     +    I  + + G G
Sbjct: 180 TPQDLADHDCLA---MLRSNEELKTWHFQDHDMKKSITVVPKRFSDDGEVIRYWALKGEG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+D+     LV ++   +          S  +   Y        +++ F +F
Sbjct: 237 IALKSVLDVQDDINNQRLVTLLNGYMKNFNTSTSVSSADLNVVYISKKYQPKRIRLFLDF 296

Query: 290 IF 291
           + 
Sbjct: 297 LI 298


>gi|194366305|ref|YP_002028915.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349109|gb|ACF52232.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 330

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 132/294 (44%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R +  + L Q  L   L +FL  YP ++
Sbjct: 63  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRASVPVSLAQMQLPKLLPKFLEQYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +DI  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 123 LQLNISNRRVDIINEGYDVALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 182

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +EL +H  ++   D   +  E       V R   +PR++      +  +      G GI
Sbjct: 183 PEELTQHVTLSISEDEARQRWELHGPEGEVRRVDLQPRVAGF---DFPLLQSMVKDGFGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP+ +  D   N  L  ++ D   P    +  +         ++ F +F+  
Sbjct: 240 TMLPETVCADAVRNGELEVVLPDWSLPQGVCHAVFASRRGLLPAVRVFIDFLAE 293


>gi|330962434|gb|EGH62694.1| putative transcriptional regulator protein, LysR family
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 298

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 127/292 (43%), Gaps = 6/292 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VA+  SFT AA +L +SQS++S  +  LE  +G++L  R  R ++ TE G +L
Sbjct: 8   DLLAFLAVAKERSFTKAAARLGVSQSALSHTVRSLEARLGLRLLTRTTRSVSPTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +     + ++E     L +    P+GK+RI     +   +++  L  FL  YPDI +++
Sbjct: 68  IQKVGPHFDEIEIELAGLSDLRDTPTGKIRINAMDHVLDVIIRPVLNTFLPKYPDISVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             D   +DI+ +  D  +RL + +    +  R    + +    +P Y +    P + ++L
Sbjct: 128 CCDYSFVDIAAEGFDAGVRLGEAVADGMIATRIGPDMRLSVVGSPAYFEGRNRPETPRDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H        +P     + W  T D      R++  +  N    ++   + G G++ +P
Sbjct: 188 TSHRC--NNLRLPTNGGLYTWEFTKDGETLNVRVTGQVTFNGVYPLLDAALDGFGLSYIP 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +V    D   L+ ++ED        +  YP   + +         +  +A
Sbjct: 246 HDLVAAHIDAGRLIHVLEDWSPTFAGFHLYYPSRRQASPAFALLLEALRYRA 297


>gi|258543561|ref|YP_003188994.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634639|dbj|BAI00615.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637695|dbj|BAI03664.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640749|dbj|BAI06711.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643804|dbj|BAI09759.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646859|dbj|BAI12807.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649912|dbj|BAI15853.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652902|dbj|BAI18836.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655956|dbj|BAI21883.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 316

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 9/299 (3%)

Query: 2   SFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           S D    L  F  VA +GSF+  + +  +SQ +ISR I+ LE   G  LF R  R LT+T
Sbjct: 12  SMDLLSALHSFVRVAATGSFSAVSRETGVSQPTISRHIALLEAHYGTTLFARTTRSLTMT 71

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L     EV   LET +  L       SG +R+  T   G   L   + E L  +P
Sbjct: 72  EDGRSLLPHAYEVLEILETAETVLGRRRASVSGLVRLGVTTAFGLC-LTRRIGELLERHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I++++ +   D+  +  D A+R+   I   SLI RKL  +     AAP  L  C  P
Sbjct: 131 DLAIEVVMRDAFGDLVEEGLDLAVRVGD-IAEGSLIARKLGVVRKWLVAAPSCLNRCGTP 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L ++  + +     +   D+N+    +  +  P  +  + NS  +++     G G
Sbjct: 190 THPRDLPEYPGVVYNYGSSRL--DWNFERDGEESVIAPS-AVFRANSSEAVLYAVESGLG 246

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I LLP++ V++   +  L R+  D   PS   Y  +        + +   +F+   + D
Sbjct: 247 IGLLPEFQVREAVASGRLTRLFADWNIPSLPFYAVHTGPRTLPLRTRTVLDFLIEVSAD 305


>gi|107023034|ref|YP_621361.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686725|ref|YP_839972.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893223|gb|ABF76388.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652440|gb|ABK13079.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 301

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 131/301 (43%), Gaps = 11/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++
Sbjct: 1   MDKFSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     V  +L      + +    PSG LR++  +  G   L  ++  F+  +P 
Sbjct: 61  AGAVYYARAKRVLGELADADALVADRGDAPSGPLRVSVPVAYGLRRLAPHVAAFVARHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+     D AIRL     ++ ++ R L T   +  A+  YL     P 
Sbjct: 121 LDLDLQLTDERVDLVSARIDVAIRLGDAAPTAEVVARPLGTFRRYVVASRAYLDAHGTPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  H  + F   + +    F       R         L+ N    + +  + G+GI
Sbjct: 181 TPGELVDHACLRFHFGVDQQTWTF---VGAQRTTQVVVTGRLKSNHSEVLREAALDGAGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD++V    +   L R+ +       +    +   Y    + + ++ AF +F+   A
Sbjct: 238 ALLPDWLVDTDLEAGRLQRLFDQYDVTPGSARAVITALYLPNQRGSKRVTAFIDFVESLA 297

Query: 295 R 295
           R
Sbjct: 298 R 298


>gi|110640568|ref|YP_668296.1| lysR family transcriptional regulator [Escherichia coli 536]
 gi|227884692|ref|ZP_04002497.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|300977337|ref|ZP_07173828.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|300977377|ref|ZP_07173866.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|301045912|ref|ZP_07193098.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|110342160|gb|ABG68397.1| putative lysR-family transcriptional regulator [Escherichia coli
           536]
 gi|222032110|emb|CAP74849.1| LysR-like transcriptional regulator [Escherichia coli LF82]
 gi|227838293|gb|EEJ48759.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|300302088|gb|EFJ58473.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300308329|gb|EFJ62849.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|300409862|gb|EFJ93400.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|307552214|gb|ADN44989.1| putative LysR-like transcriptional regulator [Escherichia coli ABU
           83972]
 gi|315287779|gb|EFU47182.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|315295129|gb|EFU54464.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
 gi|323953081|gb|EGB48949.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|324010887|gb|EGB80106.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
          Length = 308

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 142/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 2   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 61

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G  L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 62  SLTEEGQHLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 122 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 181 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVVGGNEEFEIEVSGKYISNDDESMIRM 240

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 241 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 300

Query: 292 LK 293
            K
Sbjct: 301 EK 302


>gi|327188133|gb|EGE55354.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 293

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 127/291 (43%), Gaps = 9/291 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V       GS + AAE+L +S++  SR I+ +E   G +L +R  R L+LT  G ++  
Sbjct: 8   KVLLKTVERGSASAAAEELGMSRAMASRYIAAMEDWSGTRLLHRTTRQLSLTSAGERVLD 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
           +  ++    +    E+   +  P G LR+     L +  L   L +F  LYP I++ L +
Sbjct: 68  MCRDITRVAD-AVTEVANHAETPHGLLRVTAPAILAEAQLIPLLSDFADLYPRIKVDLQI 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ID+  D  D AIR+   +   SLI ++L       YA+P YL+    P   ++LD+
Sbjct: 127 SDRAIDLVQDRIDLAIRIANRL-DPSLIAKRLGQCSSLLYASPQYLEKYGIPTGPEDLDR 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  +T+  L          L + +  I        Q N  +++ +  + G GIA+LP + 
Sbjct: 186 HRCLTYTHLGGSEWS----LRSSESQIVIAVEGTFQTNDAVALRRAALSGLGIAMLPRFA 241

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                    L+ ++      +  ++  Y          +   +F+     D
Sbjct: 242 ADQEVQAGKLIVVLPAWQPATLGIHALYVSRKHLPMAARVLIDFLATNFAD 292


>gi|296102449|ref|YP_003612595.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056908|gb|ADF61646.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 313

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 10/294 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +   L++F  V  + +F+  A +  LS S +SR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   SMNLRSLKIFIAVFEAENFSVVARREGLSASQVSRIIHQLEDALGQQLFYRNTRAVIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   E+    E  + EL   S +PSG +RI   +  GQ  +   L +    YP 
Sbjct: 66  SGHLFIRYAREMMTSFEEARRELDARSTEPSGTIRINAPVFFGQRHIAPGLPDLTARYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L +  ID   + AD   R+   +  S+   R       H  A+P YL+    P 
Sbjct: 126 LNIELTLTDDFIDPHKNAADVIFRIG-VLTDSTFHARIFGQQRYHLAASPDYLRQHGAPQ 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +                 +  +  P +  +  N+  S++   + G GI
Sbjct: 185 GPDDLAHHKCLVYRGSSGPNRWLLR--GAGEEWVHYPVMPLMTSNNAESLLAAALGGMGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRN 288
            L PD+++ D      LV ++      + T    +   YP A      ++A  +
Sbjct: 243 VLFPDWLIGDRLQQGELVALLPGLECAIHTEPLNIAAIYPNARHPPLNVRAVID 296


>gi|189350113|ref|YP_001945741.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189334135|dbj|BAG43205.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 300

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 128/292 (43%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V     F  A+  L + +S++SR+I+ LE ++G++L +R  R  ++T+ G
Sbjct: 3   DLNDLYFFAQVVDHRGFAPASRALGIPKSTLSRRIAALEQQLGVRLVHRSTRQFSITDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     V  + E  Q  +++   +P G +R+   + L    +   L EF+   P + 
Sbjct: 63  QHYYNHCKAVLVEAEAAQDAIEQMRAEPRGVIRLVCPVALLHARIAPMLAEFMAKTPRVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        A+P  ++   +   
Sbjct: 123 VHLEATNRVVDVIGEGVDVALRVRPPPLKDSDLVMRVLGERAWSLVASPALVRQH-DIAV 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     + FG   P+          V   I    +     +  +++ Q  V G G+ 
Sbjct: 182 PADLAGCPTLDFGPPQPQHAWQLEGRDGVQTTI--RHVPRFVTDDMVALRQAAVAGVGVV 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LP  +V D      LVR++ D +  S  ++  +P        ++A  +F+ 
Sbjct: 240 QLPMMMVSDEIRRGELVRVLPDWLPRSGIIHAVFPSRRGLLPSVRALLDFLV 291


>gi|163854972|ref|YP_001629270.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258700|emb|CAP40999.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 307

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 137/295 (46%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  +   G F+ A+  L + +S +SR+IS LE  +G++L  R  R L LT  G
Sbjct: 3   DLNDLFYFSQIVEHGGFSAASRALDIPKSRLSRRISQLEATLGVRLLQRTTRRLRLTLAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      E+       +  +++   +P G + ++  I + Q +L   L EFL  +P + 
Sbjct: 63  ERYLHYCREMTASARAAEDAMRQLQAQPCGPVVVSCPIAIAQQMLAPLLPEFLDAWPSVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q++  N+ +D+  +  D A+R+R  +   + L+ + L        A+P YL+    P +
Sbjct: 123 VQVLATNRRVDLIREGVDLALRVRTRLDTDAELVVKHLGMASSSIVASPAYLQRHGTPQT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H  ++F +  P+    +      D  +       L  N ++ + +  V G GI+
Sbjct: 183 PQDLAAHTTLSFSE--PQSEVRWPLRNRQDEELVVTLRPQLCCNDFIVLTEAAVRGRGIS 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP     +      LVRI+ D ++PS  V+  YP        ++A  +FI  + 
Sbjct: 241 LLPTVATYEEVRRGQLVRILPDWLSPSGIVHCIYPSRRGMAPAVRALLDFISDRL 295


>gi|78063778|ref|YP_373686.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971663|gb|ABB13042.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 352

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 8/298 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +A +G+FT   ++L+L+ + +SR I+ LET +GI+L  R  R + LTE
Sbjct: 1   MDLIQSMQVFVTLADAGTFTETGKRLNLTTAYVSRTIASLETHLGIRLLNRTTRSMCLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   ++ ++ E + + + P G+LR   +  +    +   +  F   YPD
Sbjct: 61  AGERYLARARDITLAVDASEREARGARLHPHGRLRAHCSASIANRFVIPLVAHFQARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L  +  D+  D  D A+     + SS  +   +  I     A+P Y      P 
Sbjct: 121 VSVDLTLAPQVPDLVRDSYDAAVIAMPSLPSSDQVAIDVGRIGSVLCASPAYAARHGMPD 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVLGSG 240
           + + L +H  +    L+        W  T                   + ++     G+G
Sbjct: 181 TPRALARHRCL---QLVAPAYPAREWTLTRGADSETVAFEPAMTADVAASLEIAVREGAG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I LLP+++  D   +  LVR++ D       V+  YP       K +A+ +F+  + R
Sbjct: 238 IGLLPEFVADDGLRSGALVRVLPDYRAEDVGVFLVYPSRKLLDAKTRAWVDFMKAELR 295


>gi|229589307|ref|YP_002871426.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361173|emb|CAY48037.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 297

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 125/293 (42%), Gaps = 11/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +GSF+ AA++L + Q ++S+ I+ LET + ++L  R  RGLT TE
Sbjct: 1   MDRLTAMETFVHVIETGSFSAAAKRLGIGQPAVSKSIAQLETRLAVRLVLRSTRGLTPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G            +        + +    +G LRI+  +   +  +  +L  FL  +P+
Sbjct: 61  AGLVFFEKAKRAIDEANAADDAARGAGAGLTGTLRISAPVTFARMHIIPHLGPFLTQFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++LD++ +++  +  D A+R+   +  SSL  RK+          P Y +   EP 
Sbjct: 121 LNVDVVLDDRSLNLIEEGIDVALRMGN-LNDSSLTARKIGESPCVILGTPAYFERFGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  ++ +H  I +        E  +W     D+         ++V +   +    +   G
Sbjct: 180 TPADVLQHQAIIY-----TRGEGSHWCFTQGDQEYPIVAHGRVRVTAAEGVRAAVLSHLG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + L   ++      +  +  ++ D   P+  ++  Y      + K +AF  ++
Sbjct: 235 LTLSSTWMFAPELASGEVKTVLADWTLPARDLWAVYATGRMASAKARAFVEYV 287


>gi|171318776|ref|ZP_02907915.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171096008|gb|EDT40939.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 301

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +  +S  I  LE +VG+ L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMTSFTRAAESLGIQKGRVSMVIRKLERDVGVALLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++   ++  Q     +  +  G+LR+    +L ++++   L + +  +P+++
Sbjct: 63  RAFYSRARDLLADVQELQSMFSGNGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  PI   +LI R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRLG-PIADDTLIARPLGKLRMTNAASPSYLARHGIPRTL 181

Query: 184 QELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L    H ++ +   +      + +    D     P  S +QVNS  +     + G G+
Sbjct: 182 DDLRSQGHRMVHYTLTLGARHPGWEY-PNGDGYASLPLPSAMQVNSVQTYHAAGLAGIGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                  +    ++  LV ++ D+                 + +++AF ++I
Sbjct: 241 IQAGYSALAHHLESGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFMDWI 292


>gi|298487434|ref|ZP_07005480.1| LysR-family transcriptional regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158053|gb|EFH99127.1| LysR-family transcriptional regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 298

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 8   RVFMAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +       +P G LRIA +  L   +L   +  +L  YP   + L++
Sbjct: 68  RCQRLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSVDLLI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P S QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQL-DPNVIARPLGHCDSVVCASPAYLAMHGTPSSPQELAA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E          P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 187 HNCLTYSYFGKSLWE----FTRQQLPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+ ++ D    +  ++  Y      +  L+   +F+  
Sbjct: 243 AAPLIASGKLIAVLPDHQPRALGIHAIYTSRHHQSATLRTMLDFLTE 289


>gi|323529933|ref|YP_004232085.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323386935|gb|ADX59025.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 318

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 137/291 (47%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R+F  +  + SFT AAE L++ +++ +  +  LE  +G +L  R  R +++T +G+  
Sbjct: 7   AMRIFLRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTQLLARTTRRISVTPEGAAY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +++   ++  +  ++ ++   +G+LRI     +   ++   L +F   YP++ + +
Sbjct: 67  YERCAQILADIDEMEASIRHATDNLTGRLRIEMPGAVASAIVLPALDDFHTRYPNLDLAI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+ +D+  +  DC+I+L + +  S+L+ R L T+     A+P YL     P S+ +L
Sbjct: 127 GVSNRTVDLISEAIDCSIQLGE-LPDSNLVARHLGTLEHVTCASPGYLARYGTPTSLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLP 245
             H  +    + P    +  +   VD      +++   +V+   + +   + G G+ + P
Sbjct: 186 RGH--VAVNCMSPHNGREVAFDFEVDGEARSVKVNGFIKVSDEQAYLTCGLRGHGL-IQP 242

Query: 246 DYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             I      D+  L  ++         V   Y +    + +++AF +++  
Sbjct: 243 ARIAAQPYLDSGELREVLPQWKPVPMPVSVAYLKNRHVSPRVRAFVDWLAE 293


>gi|260899498|ref|ZP_05907893.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308109216|gb|EFO46756.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
          Length = 311

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 129/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L LS ++++ ++  +E   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMTLFVSIVKHQGLAAAGRELGLSPATVTARLQAIEERYGVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+    +   ++ T+  LQ    +  G L+I+   D+G+ ++   +  F   YPD
Sbjct: 61  AGAMYHQACLNIIDSVKETENLLQTGISEVRGTLKISAPRDIGKQIISPMVSAFSEQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  S+LI RKL +      A+P YL     P 
Sbjct: 121 VTPYLYLNDNLSNLAESGLDLVIRYGE-LADSNLISRKLASSQRVLCASPDYLAKQGVPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
             Q+L  H  +    ++    E   W    +       ++  +  +    I Q+ + G+G
Sbjct: 180 CPQDLADHRCLA---MVRSNEELKTWHFKDEESHQTITVTPKRFSDDGEVIRQWALDGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDV--------ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     ++ +     LV +++                ++  Y        +++ F +F
Sbjct: 237 IALKSILDIQQDLKQQRLVTVLDGYMKNFSAFSQGAEADLHVIYQSRQYQPKRVRLFLDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LVEQ 300


>gi|28899920|ref|NP_799575.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838929|ref|ZP_01991596.1| LysR-family transcriptional regulator [Vibrio parahaemolyticus
           AQ3810]
 gi|260363214|ref|ZP_05776083.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260880501|ref|ZP_05892856.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260898546|ref|ZP_05907042.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260902227|ref|ZP_05910622.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28808203|dbj|BAC61408.1| putative LysR-family transcriptional regulatory protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149747600|gb|EDM58528.1| LysR-family transcriptional regulator [Vibrio parahaemolyticus
           AQ3810]
 gi|308084946|gb|EFO34641.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092088|gb|EFO41783.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308110481|gb|EFO48021.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308112299|gb|EFO49839.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 295

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 11/284 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  V  SGSFT  AE+L +S+  ++R +  +E  +  +L +R  R ++LT  G +   
Sbjct: 8   KVFVDVVYSGSFTATAERLDMSRPMVTRYVEAMENWLQTRLLHRTTRKVSLTTAGERSLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  + + T         + SGK+R+A++   G + L   +  F+  +P + I + L
Sbjct: 68  QIERWLKQAD-TLTSNIAVDGELSGKIRLASSTSFGFSQLIPAVNSFMQKHPKVHIDIDL 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +   D++    D AIR+       SLI + +        A+P YL+        ++L  
Sbjct: 127 QDSVSDLTEQRIDLAIRIASD-PDPSLIGKPIAVCESVLVASPQYLQTHHAIAHPRDLSS 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H+ + +     K  E   W  +         I C L  N   +++   + G GI++LP Y
Sbjct: 186 HDCLGY-----KNFERHVWHLSQGDQFESVGIECRLTSNEATALLHGALQGMGISMLPTY 240

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +      +  L  ++ D       +Y  Y      +  ++AF +
Sbjct: 241 LSNIYLQSGQLESVLPDWKPNDLNIYALYSSRKHLSPAVRAFID 284


>gi|206578294|ref|YP_002237000.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206567352|gb|ACI09128.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 305

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 132/298 (44%), Gaps = 5/298 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  SG+F  AA  LH+++S++ + I+ LE  +G+ LF R  R   LT
Sbjct: 1   MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G + +    E   ++   +  LQ    +  G+LRI+  +  GQ  +   L      YP
Sbjct: 61  EEGEQFYHQCREALARIREAEEALQRGKGEVQGRLRISLPVLFGQRCVAPLLFRLSQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +++  +  D A+R+     + SL  R L    M   AA  YL+    P
Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGNLADTGSLRARALGEHGMVLCAAVEYLRRQPAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I  L +H  + +  L    ++ +         +     + L  + + +I      G G
Sbjct: 181 QTIAGLSEHRTLGY--LHNGQLQKWQLYDPQQGEVRFSPQTGLVQDDFAAIAAAVQQGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA LPD++V     +  L +++       F ++  +PE      K +   + +    R
Sbjct: 239 IAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEGPWLPQKTRVAIDALRAGLR 296


>gi|170721494|ref|YP_001749182.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759497|gb|ACA72813.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 301

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 122/290 (42%), Gaps = 8/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA+ GSF  AA    ++ + + R++  LE  +G+KL +R  RGL LTE G +L
Sbjct: 6   ELHSFVQVAQKGSFASAALSEGVTPAILGRRLDALEKRLGVKLMHRSTRGLRLTELGEQL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +    +  + ++        G L ++     G+  +  +   F   +P++++  
Sbjct: 66  LERARLLLRDFDDMEADISGCGSMVKGNLMVSAPASFGRVHVAPHALGFHQEFPNLKLSF 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D +IR+   +   + +  KL +        P Y      P ++++L
Sbjct: 126 NLTDSLVDLVSEGYDMSIRIGG-VTDPNYVAVKLFSNRRVVCGTPEYFARNGRPTTLEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + F     +  +   W+   +      R+S  L  N    +  +   G GI    
Sbjct: 185 ADHNCLAF---TLQGGQQRGWVFQRNGRQVAMRVSGSLACNDGELLFSWMRQGLGIGWRS 241

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + ++    +  LV +++D     + +   YP+      K++ F  ++ L
Sbjct: 242 TWEIQKELLSGELVTVLDDFALDDYDIQAVYPQQRFLPAKVRHFIEYLKL 291


>gi|78062199|ref|YP_372107.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970084|gb|ABB11463.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 320

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 5/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G +  
Sbjct: 26  LHVFMTVATAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 85

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R T   Y ++   + EL+++  +P+G LR+         ++   L  F   YP +++++ 
Sbjct: 86  RQTEPAYRQVMQARDELKDARSEPNGLLRVTALPLARTLVIAPVLATFRERYPKVRLEIR 145

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +N+ +DI+ D  D  IRL   +Q   +  R    +     A+P YL     P SI +L+
Sbjct: 146 YENELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPGYLARYDAPASIADLE 205

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI--ALLP 245
           +H  I F       +  +  L    R +          N   +++     G GI  A + 
Sbjct: 206 RHACIRFRFSESGRLHKWP-LRDGQRDVDLDPDGVFVTNDADAVIDAARAGVGIAFAFMR 264

Query: 246 DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + I +D  +  LV ++         ++  Y        KL+AF + +  +
Sbjct: 265 ERIEQDLRDGTLVEVLPGACRTLPPMWLYYVNRKHVPAKLRAFIDVLRER 314


>gi|53718574|ref|YP_107560.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|126453248|ref|YP_001065283.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167737536|ref|ZP_02410310.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167814655|ref|ZP_02446335.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167823123|ref|ZP_02454594.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167844685|ref|ZP_02470193.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167893213|ref|ZP_02480615.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167901667|ref|ZP_02488872.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167909917|ref|ZP_02497008.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167917939|ref|ZP_02505030.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217419696|ref|ZP_03451202.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|254181468|ref|ZP_04888065.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254196355|ref|ZP_04902779.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254260570|ref|ZP_04951624.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|52208988|emb|CAH34927.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|126226890|gb|ABN90430.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|169653098|gb|EDS85791.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184212006|gb|EDU09049.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217397000|gb|EEC37016.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|254219259|gb|EET08643.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 320

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E       P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHG-ATPQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 126 DIVLSDSLVDPLDERSDIAIRSGA-LDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+HN I                   +     P    L +    SI +  V G G+A L
Sbjct: 185 DLDRHNCIGLSGNAKAWP-----FVAEEGQRLLPSAGNLLLGDNESIREAAVSGLGLARL 239

Query: 245 PDYIVK---DNPNLVRIMEDVIT-PSFTVYFCY--PEALKNTGKLKAFRNFIFLKAR 295
             + V    D   LV ++E         +   +  P       ++ A  +F+  + R
Sbjct: 240 ARFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSE-HLPMRVHALLDFLKERIR 295


>gi|218676212|ref|YP_002395031.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
 gi|218324480|emb|CAV25928.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 326

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G  +
Sbjct: 28  DLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEKALSVKLFERTTRTLIITQAGQLV 87

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G + +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 88  YDQSVVMINAAQQAVELSTSDHTEPAGSITVAAPEAFLNSVLQPFVVPFLNQYPEIQLKL 147

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DIDI     D A RL       SL+ ++L   ++   A+P YL     P    EL
Sbjct: 148 RAADGDIDILRQGIDIAFRLTDK-PDESLVLKELGKTNLVLCASPDYLDAKGTPHHPTEL 206

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +   +     + DF      D     P      VN     ++    G G+ +  D
Sbjct: 207 SEHDCLYLAETDKDHIWDF---LKDDEFYTVPVSGRYAVNHSQMRLKGVKEGLGVGIFHD 263

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++++D     ++V+++ED    S     +   + +      +L+ F ++      D
Sbjct: 264 FVIQDALAEGSVVQVLEDWTIKSNYHGAIAMQFAQTKYMPARLRVFIDYAMEHLGD 319


>gi|269961867|ref|ZP_06176224.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
 gi|269833445|gb|EEZ87547.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
          Length = 301

 Score =  234 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 135/298 (45%), Gaps = 16/298 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LT+ G+  H
Sbjct: 1   MTLFVSIVKNQGLAAAGRELGLSPATVTARLQSLEDRYGVKLLNRSTRHISLTDSGAMYH 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   ++ T+  LQ  + +  G L+I+   D+G+  +   L EF  LYPD+   L 
Sbjct: 61  QACLEIIDSVKETENLLQTGTKEVRGTLKISAPRDIGKQYISPILSEFSQLYPDVIPYLY 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++   +++    D  IR  + +  S+LI RKL +      A+P YL     P++ Q+L 
Sbjct: 121 LNDNLSNLAESGLDIVIRYGE-LADSNLISRKLASSRRVLCASPQYLAKKGTPITPQDLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
           +H+ +    ++    E   W    +       +   +  +    I Q+ + G+GIAL   
Sbjct: 180 QHDCLA---MVRSNEELKTWHFQDEEQHNVVTVVPKRFSDDGEVIRQWALDGAGIALKSI 236

Query: 247 YIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             V+++     LV ++   +        +    +   Y        +L+ F +F+  +
Sbjct: 237 LDVQEDIKQQRLVTVLNGYMKNFNASTSSAGADLNVIYLSRQYQPKRLRLFLDFLIER 294


>gi|163842639|ref|YP_001627043.1| LysR family transcriptional regulator [Brucella suis ATCC 23445]
 gi|254701168|ref|ZP_05162996.1| LysR family transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|254709510|ref|ZP_05171321.1| LysR family transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|256031004|ref|ZP_05444618.1| LysR family transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256159058|ref|ZP_05456887.1| LysR family transcriptional regulator [Brucella ceti M490/95/1]
 gi|256254407|ref|ZP_05459943.1| LysR family transcriptional regulator [Brucella ceti B1/94]
 gi|256368809|ref|YP_003106315.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260168136|ref|ZP_05754947.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99]
 gi|261221572|ref|ZP_05935853.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261757593|ref|ZP_06001302.1| transcriptional regulator [Brucella sp. F5/99]
 gi|265997536|ref|ZP_06110093.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|306844988|ref|ZP_07477569.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|163673362|gb|ABY37473.1| transcriptional regulator, LysR family [Brucella suis ATCC 23445]
 gi|255998967|gb|ACU47366.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260920156|gb|EEX86809.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261737577|gb|EEY25573.1| transcriptional regulator [Brucella sp. F5/99]
 gi|262552004|gb|EEZ07994.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|306274620|gb|EFM56409.1| LysR family transcriptional regulator [Brucella sp. BO1]
          Length = 304

 Score =  234 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 133/300 (44%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 60  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 120 DIEVRLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S + L  D+H+ +      P   E +  L T +             +    + Q+ + G
Sbjct: 179 QSPEALLSDRHHCLLL--RFPGSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P + VK+   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 237 RGIINKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 296


>gi|330965087|gb|EGH65347.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 302

 Score =  234 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F  +  +GSF+ AAE+++ + S+ISR +  LE  +G++L  R  R L++T  G 
Sbjct: 4   LNAIKAFRNLVEAGSFSSAAERMNTTHSTISRHLQQLENVLGVQLVNRTTRQLSVTRAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++  +LE   + +  +S K    LR++  + +G   L   L  F   YPDI++
Sbjct: 64  QYYLACIDILDRLEQAGLAVSHASQKLCATLRVSVPMVIGSLELANWLPAFQKRYPDIRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +D+     D A+R+ + +  +SLI R L    +   A+P Y+     P +  
Sbjct: 124 ELSCSDQFVDVVAGGFDLALRIAESLTDTSLIARLLAVSEVRLVASPGYIARHGLPRAAH 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+ F         D+   +T  +         L  +S  ++    +  SGIA  
Sbjct: 184 DLKHHQLLGFS----GGSADWLLTSTTGQSERIKPAGMLCSDSITALHAAALAHSGIAAF 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +  V+      +LV I+ D        +  YP+    +  ++A  +F+    R
Sbjct: 240 TEITVRQQLAQGHLVTILPDWTLGQRRYHALYPQTRHVSPAVRALIDFMVEHYR 293


>gi|187928087|ref|YP_001898574.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187724977|gb|ACD26142.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 298

 Score =  234 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 146/301 (48%), Gaps = 11/301 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAE+L  + S +SR +  LE ++   L  R  R L+LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAERLGQTVSGVSRALRRLEEKLDTTLLSRTTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  + ++     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGATFLAQARSILAAVDEAEEQIALRRQQPAGRLRVNAAMPFMLHVVAPLVPDFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  ++  ID+  +  D AIR+   ++ S+L  R L T  +   A+P YLK    P
Sbjct: 121 QIELELNTNDLIIDLLEEDTDVAIRIG-TLRDSTLRARLLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + EL KH L+ F  + P+ +  +       DR   EP    L+ +S  ++ Q  + G+
Sbjct: 180 RHVDELQKHALLGF--VQPESLNQWPLRGPYGDRLRIEP---TLKASSGETLRQLALQGA 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI  L D++  ++    +L+++++D        ++  Y    +   ++  F +F+  +  
Sbjct: 235 GIVCLADFMTAEDRRAGDLMQVLQDATVEVLQPIHAVYYRNTQLASRIACFLDFLEARLA 294

Query: 296 D 296
           D
Sbjct: 295 D 295


>gi|116695242|ref|YP_840818.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529741|emb|CAJ96088.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 310

 Score =  234 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + +  F  V  +GS + AA +L+LS+S +S +++ LE  +G  L  R  R L+LTE 
Sbjct: 2   FKLEGVASFVAVVEAGSISEAARRLNLSKSVVSERLAELEKAMGANLLRRTTRRLSLTED 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      + + H++E    ++ E     +G LRI+  +  G+  L   +  FL  +P++
Sbjct: 62  GAAFLERATRILHEVEAAATDVAERRGTLAGSLRISAPVTFGRMHLGPAIYPFLARHPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L LD++ +D + D  D  +R   P++SS L+  +L   H    A+P YL     P +
Sbjct: 122 ELSLDLDDRRVDAATDSYDAVVRHG-PLESSRLVAWQLAPSHRLLVASPDYLAQMGAPAT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H  I + +           L   D          L+VN+   +    + G GIA
Sbjct: 181 LAELQQHRGIFYANRGAADWR----LHGPDGTEIARAAVALRVNNGDMMRDAAIAGVGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LLP +I  D      L  I   +     ++Y  +PE  + + +L+AF  
Sbjct: 237 LLPTFIAGDAIRQGALAVIEVGLRAEPESIYIAHPEGRRVSARLRAFAE 285


>gi|206561026|ref|YP_002231791.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198037068|emb|CAR52989.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 300

 Score =  234 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 141/300 (47%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD   L    V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   I+   S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEDAAIDAGRSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+  Y++  
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGVP-EPSSYRARLLLETRVLTCASAAYVERH 179

Query: 178 REPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYC 235
            EP   ++L   H  +   D  P     + W     + +        L VN    ++  C
Sbjct: 180 GEPRHPRDLAHGHRCVLIRD--PVTGRPYEWEFHRGKEVVPFDAGGRLMVNDTGGLLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V G+GIA L +   +D   +  LV ++ +    +F +Y  +  +     K++ F +F+  
Sbjct: 238 VGGAGIAQLLELYARDIVADGKLVLLLPEWTDETFPLYAYHHASNLVAAKVRVFLDFVRE 297


>gi|107027308|ref|YP_624819.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691295|ref|YP_836828.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896682|gb|ABF79846.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649295|gb|ABK09935.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 328

 Score =  234 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 125/298 (41%), Gaps = 6/298 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  +A +G+FT   ++L ++ + +SR ++ LE  +GI+L  R  R + LTE
Sbjct: 1   MDLIQSMQAFVTLADAGTFTETGKRLGITTAHVSRLVASLEHRLGIRLLNRTTRSMCLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   ++ ++ E +++ V P G+LR   +  +  + +   + +F   YPD
Sbjct: 61  AGERYLARARDITLAVDASEREARDARVHPHGRLRAHCSASIANHFVIPLIGQFQARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L      +  D  D A+     + SS  +   +  I     A+P YL     P 
Sbjct: 121 VSVDLTLAPHLPKLVRDSYDVAVIAMPSLPSSEQVAIDVGRIRSVLCASPAYLDAHGMPD 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S   L  H  +    + P   E    L              +  +   S+      G+GI
Sbjct: 181 SPGALVHHRCVQL--VAPAYHERIWTLWNGAEAQTVDVDPSMTADVAASLAIAVREGAGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LLPD++   +     LVR++ D       V+  Y        K +A+ +F+    RD
Sbjct: 239 GLLPDFVAAADLRSGALVRVLPDYQAEEIGVFLVYASRQHLDAKTRAWVDFMKAALRD 296


>gi|313498567|gb|ADR59933.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 310

 Score =  234 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++
Sbjct: 1   MDM-LHAMRTFTRVVECGSFAAAANALDISAAQVSRIVAELENQLQTRLLHRTTRRLRMS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++    E    E + + + P G LR+     +G  LL   +  +  LYP
Sbjct: 60  EAGERFLERARQIMLLTEEAVGEARGAHLTPRGHLRLHCPHGMGL-LLMPLVAGYNTLYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L L  ++ D   +  D  I +   +  S LI   L  I     AAP YL     P
Sbjct: 119 EVVIELTLSQRNPDPLAEGHDVVITVDGALPDSQLIAVPLGNIFSIPCAAPGYLDTHGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  +      P    D+ +   VD+ +  P  S    N   +++    LG G
Sbjct: 179 ERPEDLHGHRCLRMA--YPMYEGDWVFPQGVDQCVIAPNDS-FSTNVADAMLVASELGMG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I LLP Y   +      L R++         +Y  YP       K++ + +++  + 
Sbjct: 236 IGLLPFYTASEAIGQGRLCRLLAPYRLRESALYAMYPSRHYLDAKVRTWIDYLKEQL 292


>gi|260753861|ref|YP_003226754.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258553224|gb|ACV76170.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 304

 Score =  234 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 131/289 (45%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+ F +VA+  SFT AA +L +SQS++S  +  LE  + + L  R  R +T T  G
Sbjct: 7   NLNDLQSFLIVAQEKSFTKAAAKLGVSQSALSHTVRQLEARLNLTLLIRTTRSVTPTSAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +  +  + ++E     + E   +P+G +RI +T D    +++  +K FL  YP ++
Sbjct: 67  EYLIQNMAPHFDQIEKQLASIGELRNQPTGTIRITSTDDALAYVIRPKIKGFLQKYPGVK 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+ D K +DI  +  D AIRL + +            I      +P Y +N   P + 
Sbjct: 127 IELVSDLKLVDIFTEKFDAAIRLGENVTKEMASVPLTPDIRFTVVGSPEYFQNKPIPETP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  IT    +P     + W      R I       L  NS   I   C+ G G+A
Sbjct: 187 QDLLNHQCITI--RLPTHGGIYAWEFEKAGRDIKIRVDGPLVFNSIFPIRNACLDGLGLA 244

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P+ + K   +   L+ ++ED        + C+P   +N      F  
Sbjct: 245 HMPEIMAKKYIEEGRLIPVLEDWCPYWSGYHLCFPHHYENIRPFSLFLE 293


>gi|226943206|ref|YP_002798279.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226718133|gb|ACO77304.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 311

 Score =  234 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R F  V  SGSFT AA  L LS + +SR +S LE  +  +L +R  R L +T
Sbjct: 1   MDI-LQAMRAFVRVVDSGSFTAAAASLQLSNAQVSRLVSDLEASLQARLLHRTTRRLAVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  +++   +E   + + P G+LR+ +   LG   L   +  +  LYP
Sbjct: 60  EAGERYLQRCRNILAEVQDAAVEASGAHLTPRGRLRVHSITSLGTLQLAPLVARYTALYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L L  +  D+  +  D  I L + +  S L+ +++  +H    AAP YL+    P
Sbjct: 120 EVSLDLTLSQRTPDLLEEGHDVVITLSRELPDSELVAQRVGDLHSVVCAAPQYLERHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              Q+L +H  +   D +     D       D  +        QVN   ++ Q    G G
Sbjct: 180 KIPQDLHEHRCLRLVDPL---FPDRWVFQDGDGELTVRPGGHFQVNVAEAMAQAAAAGMG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + LLP ++         L R++        ++Y  YP       K + +   +  + 
Sbjct: 237 VCLLPSFVAAKALRQGTLKRLLPQYQLHQRSIYALYPSRSFLDAKTRTWIELLKEEL 293


>gi|297537389|ref|YP_003673158.1| LysR family transcriptional regulator [Methylotenera sp. 301]
 gi|297256736|gb|ADI28581.1| transcriptional regulator, LysR family [Methylotenera sp. 301]
          Length = 310

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 132/306 (43%), Gaps = 17/306 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F    + GS    A    ++ ++ S+ I  LE  +G +L  R  R L +TE
Sbjct: 1   MDTLRSIESFVKAVQGGSIAAGARLQGITPAAASQNIQRLEKSLGTRLLIRTTRQLAMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   L   Q  + E   +P G+++I  ++  G+++L   +  F L YP+
Sbjct: 61  SGELYYAEVRNIIEGLAKAQYAITEFQGQPQGRIKIGCSVAFGRHVLMPLIPAFTLKYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++IL + + D   +  D +IR ++ ++   LI RK+ T+ +   A+P YL     P 
Sbjct: 121 ISVEVILTDGNADHISEDIDVSIRFKQQLE-PGLIARKIATVPVLFCASPSYLARKGFPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              EL +H+ + F   +P      +W    D    EP I   +  N   S+    + G+G
Sbjct: 180 EPAELLEHDCLVF--RMPVDGRILSWGFLRDGLRYEPEIKPTIICNDIDSLGSLAIAGAG 237

Query: 241 IALLPDYIVKDN---PNLVRIM------EDVITP---SFTVYFCYPEALKNTGKLKAFRN 288
           IA L  +I  +      LV +        + I         Y C+ +    T K++AF +
Sbjct: 238 IARLAAFIANEEIKKGRLVALFQANPHNPESIQSDSVPLEFYACFQDKHAITKKVRAFVD 297

Query: 289 FIFLKA 294
           ++    
Sbjct: 298 YLIEAV 303


>gi|262042799|ref|ZP_06015952.1| HTH-type transcriptional activator AaeR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039866|gb|EEW40984.1| HTH-type transcriptional activator AaeR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 303

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R L LTE G   +
Sbjct: 1   MSVFAKVVELGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSLGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  + +    +L   +  P G LRI  +  + QN+L     + L  YP + + L+
Sbjct: 61  QGCRRMLFEAQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLARITAKMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L ++ M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGSMPMVLCAAKSYLAQAGNPEKPADLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
            H  + +     +   +F  +A                N  ++++++   G GIA +P  
Sbjct: 180 GHAWLEYSV---RPDNEFVIIAPEGISTRLTPQGRFVTNDPMTLVRWLTAGVGIAYVPLM 236

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + +++     L  ++    +    VY  Y E  K   K++   N++  
Sbjct: 237 WAIEEINRGELEILLPSYQSDPRPVYTLYTEKDKLPLKVQVCINYLTE 284


>gi|271502613|ref|YP_003335639.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270346168|gb|ACZ78933.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 296

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 130/286 (45%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V   GSF+ AA +L + Q +IS+ I  LE ++ +KL  R  RGLT TE G + +
Sbjct: 7   LETFVCVYECGSFSAAASRLGIGQPAISKAIMQLEQQLAVKLLLRSTRGLTPTEAGQQFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +    +L+  Q  ++  + + SG LR++  +   +  +  +L  FL  +P+++  +I
Sbjct: 67  RQVAPALRQLQEAQDAVRGGNGELSGYLRVSAPVTFARLHVLPHLHTFLSQHPNLKADII 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+  +  D A+R+   ++ S L  RK+ +  M   A P Y      P S   L+
Sbjct: 127 LDDRPVDLIAEGIDVALRVGD-LKDSGLTARKIGSAPMRLLATPAYFAAHGTPTSPDALE 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +          F      DR         ++  +   + +  + G+G+ +   +
Sbjct: 186 HHDAVIYLQDEAPGSVCFQ---KGDRQHRVTLSGRIRTTAAEGVREAVLAGNGLTVASAW 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +      N  +V  + D       V+  YP     + + +AF  F+
Sbjct: 243 MFAPELANGTVVTALTDWHIGVRDVWAVYPGGRLTSVRAQAFTGFV 288


>gi|261346255|ref|ZP_05973899.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
 gi|282565563|gb|EFB71098.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
          Length = 304

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 138/292 (47%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +   GS + AA++L +S++ ++R ++ +E   G++L  R  R L+LT 
Sbjct: 1   MDRLKAVQVFITIVEQGSLSGAADKLDMSRAMVTRYLAEMEQWAGVRLLNRTTRRLSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +++ + ++     T  ++ + ++   +G +RI+ +  + Q+ L   + EFL LYP+
Sbjct: 61  AGESVYQQSLQLNAISLTLPVQQKHNTKDLAGLVRISCSQSIAQSALSLAISEFLQLYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I + + NK +++  +  D AIR+   ++  SLI + L T H    A+P +LKN   P 
Sbjct: 121 MMIDMQISNKSVNLIEERIDLAIRITNQLE-PSLIAKPLSTCHSVICASPAFLKNKTLPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L     +T+                  +         L  N  + +M+  + G+GI
Sbjct: 180 QPEDLALLECLTYSFFGRSLWS----FEKEGKTSTVLVDGRLSANESVFLMEAALNGAGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+ P Y V     +  L++++ D       +Y  Y         L+A  +F+
Sbjct: 236 AMQPYYSVAKYLQSGELIQLLPDYTPMPLGIYGVYTSRQHMPTPLRAVIDFL 287


>gi|325981871|ref|YP_004294273.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212]
 gi|325531390|gb|ADZ26111.1| transcriptional regulator, LysR family [Nitrosomonas sp. AL212]
          Length = 291

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 133/293 (45%), Gaps = 12/293 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M F  D + +F  V ++ SF  AA+ + +  S++SR+IS LE  +G++L +R  R +TLT
Sbjct: 1   MGF-LDDMALFVEVVKAKSFRGAADIIGIPNSTLSRRISALEKSIGLRLLHRTTRRITLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +  + +    +L E   +PSG LR +  +D     +   + EF  LYP
Sbjct: 60  EAGQIYFERCKRIVDEAKLAHEQLGEMLEQPSGVLRASLPVDFAVTYMTPLIAEFARLYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I     L ++  D+  +  D AIR+ +P ++  LI R L  + ++ YA+P YL    E 
Sbjct: 120 GIVFDFDLTSRRADLVSEPFDVAIRIGEP-ENPQLIARPLGVLPVYLYASPRYLDRSGEL 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  +  G +        N   T++  IG    S  ++NS   I +   L  G
Sbjct: 179 AEPADLAHHECL--GIMKSNTWTLHNGAHTIEVSIG----SRFKLNSVGMICRLAALDMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I ++ + IV D+     L R++         VY    E      K + F  F+
Sbjct: 233 IIMMWEKIVADDLASGRLRRVLPQWHGAPVPVYAVT-ETRLLPAKTQHFIKFL 284


>gi|320638552|gb|EFX08260.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. G5101]
 gi|320644013|gb|EFX13093.1| LysR substrate binding domain protein [Escherichia coli O157:H-
           str. 493-89]
 gi|320649295|gb|EFX17846.1| LysR substrate binding domain protein [Escherichia coli O157:H-
           str. H 2687]
 gi|320657004|gb|EFX24839.1| LysR substrate binding domain protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662435|gb|EFX29824.1| LysR substrate binding domain protein [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320665361|gb|EFX32448.1| LysR substrate binding domain protein [Escherichia coli O157:H7
           str. LSU-61]
          Length = 294

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDI+
Sbjct: 66  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVSQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +        +    L   D+ I          +      +   LG G+A 
Sbjct: 186 ADLKAHPCIAYQFADGSVYQWE--LNQDDKKITHQPEGQWAFSDSYMEAEAARLGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  +V D+     L+R+++        ++  YP     +  L+   +
Sbjct: 244 VPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYPH-RNVSPALRMVID 290


>gi|254791464|ref|YP_003076301.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223766|ref|ZP_05938047.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255975|ref|ZP_05948508.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|254590864|gb|ACT70225.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
          Length = 329

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 142/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++ +++S+ +  LE  +  KL YR  R +
Sbjct: 23  MKIEPSILPSLAWFALIVRAGSFSRAASEMGITLAALSQNLKSLEERLNTKLIYRTTRNI 82

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 83  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 142

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 143 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 201

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 202 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSKVVGGNEEFEIEVSGKYISNDDESMIRM 261

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 262 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 321

Query: 292 LK 293
            K
Sbjct: 322 EK 323


>gi|226194919|ref|ZP_03790510.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225932724|gb|EEH28720.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 330

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 124/286 (43%), Gaps = 5/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G +  
Sbjct: 1   MRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAGERYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ I+L 
Sbjct: 61  LRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVSIELT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D+    +D A+     +  S L+   L +      A P YL+    P + ++L 
Sbjct: 121 LSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTPRDLA 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +T         E    L   +          +Q N+  S+      G GI +LP Y
Sbjct: 181 RHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGMLPLY 238

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++    NLVR++         VY  YP       K++ +   +
Sbjct: 239 AAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEAL 284


>gi|206559557|ref|YP_002230318.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035595|emb|CAR51481.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 337

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +R F  VA++ SF  AA  L++S    SR ++ LE E+G++L  R  R ++LTE
Sbjct: 6   MDKFRAMRTFVKVAQTSSFIKAANLLNMSVGVASRHVALLEDELGVRLLNRTTRKVSLTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        V  +L+        ++   +G+LR++       + L   L  +   YPD
Sbjct: 66  AGALFTESCQRVLDELDEALSISTSTTRPATGRLRVSAPTVFAISRLAPLLTLYRTSYPD 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L+L ++ +D+  +  D  I     ++S +++ R L     H  A P YL +   PL
Sbjct: 126 VTIDLMLVDRPVDLVEEQLDVCIVPAHHVKSLNVVSRPLTISEFHICATPSYLSDHGAPL 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +     +  E   +    D  +     S +  N++  + +  +   GI
Sbjct: 186 HPSDLADHAFLAYRSDHRE--EVMVFKDAADVAVEVLPKSAVTSNNFGLLRESALADLGI 243

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP YIV+ +     LV+++ +   P       Y      + K + F +    
Sbjct: 244 AMLPAYIVQHDIAEGRLVQVLNEFQLPVSEHRIVYSTRRHLSAKTRGFIDLALE 297


>gi|209543061|ref|YP_002275290.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530738|gb|ACI50675.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 288

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V    SFT AA  L L +S+++  +  LE  +G++L  R  R ++ T  G+  H
Sbjct: 1   MRVFTRVVERRSFTLAASDLGLPRSTVTDAVKRLEARLGVRLLQRTTRHVSPTLDGAAYH 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   LE  +     +  +P G LR+     L ++ +   L +F+  YPDI++ L 
Sbjct: 61  RRCLALIADLEDAEAAFGGA--RPRGMLRVDVHGTLARHFVLPRLPDFMAAYPDIELTLS 118

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   +Q S ++ R++  +     AAP YL     P  +  LD
Sbjct: 119 EGDRLVDLIREGIDCVLRVGD-LQDSDMVARRVAMLEEVTCAAPSYLARFGMPGDVDALD 177

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++ F       +    ++   D       +S + VN   S++    LG G+  +P Y
Sbjct: 178 GHRMVGFRSSATGTLLPLEFMVG-DSLRTITLLSPVAVNGAESLVAAARLGLGLVQVPRY 236

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V  +     LV ++ D       V   YP   +   +++ F ++I
Sbjct: 237 HVVQDLGQGTLVVVLPDHPPSRTPVSLLYPRHRQVAPRVRVFIDWI 282


>gi|50120417|ref|YP_049584.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610943|emb|CAG74388.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 300

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 133/293 (45%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS+T AA  L +S S+IS+ I  LE  +G+ LF R  R L LT +G 
Sbjct: 10  LTGLIAFARAGALGSYTAAARSLSVSPSAISKSIQRLEQHLGVTLFTRTTRSLVLTAEGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +LH     +    E  +   + S  +PSG LRIA +  +G +++   L  F  L+P + I
Sbjct: 70  ELHERAIRLLLDAEEIEQVAKRSRAEPSGTLRIAASFPIGLHMIAPVLPTFCALHPKVSI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ I I  +  D AIRL   +  S+L+ R+L    +  YA+P YL  C  P    
Sbjct: 130 DLRLSDRVISIIDERIDIAIRLGD-LADSNLLSRRLSPYKLCCYASPEYLATCPPPRHPN 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  +          + F W   V +R I     S + V++  +++     G+GI +
Sbjct: 189 ELMVHKTVNL--RYQNTGQVFRWPFRVGEREIEIVPPSNIIVDASEAVIAAVSAGAGIGM 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              ++         L+ ++ D       +   + E+ ++   ++AF + +  +
Sbjct: 247 ATSFMTASLVRKKALIPVLSDFAIERHNISAVWHESRRSNPAVRAFIDLMLEQ 299


>gi|309703491|emb|CBJ02831.1| LysR-family transcriptional regulator [Escherichia coli ETEC
           H10407]
          Length = 310

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +   GSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHRGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|304392903|ref|ZP_07374834.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
 gi|303294901|gb|EFL89270.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
          Length = 300

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 123/288 (42%), Gaps = 6/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V   GS + A   L +S +  S +I+ LE  +G++LF R  R L+ TEQG   +
Sbjct: 9   IKTFVRVYDLGSMSAAGRDLRISAAVTSSRIADLERHLGVRLFNRTTRSLSPTEQGELFY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   +E  +  + + +  P G + +A  + LG+ L+   +  F   YPD+ ++L 
Sbjct: 69  KGAIRILDMIEEVEGSIADVTDSPKGTVFVAAPLGLGKKLIAPLVPSFKENYPDVNVRLR 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D + +  D A  L + ++ S +  R +        A+P YL+    P S ++L 
Sbjct: 129 LSDRKVDFTAEGLDAAFVLGE-LKDSEMRVRPVHEFKRVLCASPAYLERQGAPTSPEDLP 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ +      P   E F  L    R       S ++ +    +  + V G GI     +
Sbjct: 188 NHHCLLL--RFPGAEEFFWTLQVNGRRQRYDFSSPMESDDGDVLTGWAVDGCGIVSKTRF 245

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            V    ++  LV ++ D    S      +P       K +   + +  
Sbjct: 246 EVSEQLEDGRLVEVLPDTPPTSIPFSCVFPHKRLQDPKTRLLIDHMIE 293


>gi|192290314|ref|YP_001990919.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192284063|gb|ACF00444.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 305

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 127/301 (42%), Gaps = 9/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  VA    F  AA +L LS S+++R ++ LE  +G +L  R  R + LT+
Sbjct: 1   MDRLDTMTAFVAVADLQGFAPAARKLGLSPSAVTRMVAALEERLGTRLLQRTTRSVALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   +E          + PSG+L ++  +  G+  +   L ++L  YP+
Sbjct: 61  TGVRYLERVRRILADVEEADTSAAAERIIPSGRLVVSAPVGFGRRHVAPLLSDYLRRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +L L +  I++  D  DCA+R+   +  SSL+ R+L  +     A+P YL     P 
Sbjct: 121 VTGELRLSDLMINLVEDGVDCAVRIGH-LSDSSLVARQLGAMRRIVVASPAYLAARGIPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  E+  H++I FG         F       R    PR   L  N     +     G G+
Sbjct: 180 TPAEIAAHDVIHFGQTGAPVGWHFVVDGRDVRIACTPR---LVSNVADVAILDAERGGGL 236

Query: 242 ALL---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +             L  ++     P   +   YP +   + K++AF + +  +  DW+
Sbjct: 237 TRVLAYQAADAIAAGRLQIVLATYEVPPLPIAIVYPTSRLLSAKVRAFID-LAAETSDWR 295

Query: 299 F 299
           F
Sbjct: 296 F 296


>gi|291281194|ref|YP_003498012.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. CB9615]
 gi|290761067|gb|ADD55028.1| Putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. CB9615]
 gi|320638573|gb|EFX08281.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. G5101]
 gi|320644034|gb|EFX13114.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H- str. 493-89]
 gi|320649316|gb|EFX17867.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H- str. H 2687]
 gi|320656880|gb|EFX24740.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320662457|gb|EFX29846.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665273|gb|EFX32363.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 329

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 142/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++ +++S+ +  LE  +  KL YR  R +
Sbjct: 23  MKIEPSILPSLAWFALIVRAGSFSRAASEMGITLAALSQNLKSLEERLNTKLIYRTTRNM 82

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 83  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 142

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 143 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 201

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 202 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSKVVGGNEEFEIEVSGKYISNDDESMIRM 261

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 262 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 321

Query: 292 LK 293
            K
Sbjct: 322 EK 323


>gi|217969721|ref|YP_002354955.1| LysR family transcriptional regulator [Thauera sp. MZ1T]
 gi|217507048|gb|ACK54059.1| transcriptional regulator, LysR family [Thauera sp. MZ1T]
          Length = 301

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 120/290 (41%), Gaps = 8/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR F +VA  GSF  AA    ++   + R++  LE  +G+KL +R  RGL LTE G +L
Sbjct: 6   ELRSFVLVAEKGSFAAAALVEGVTPVVMGRRLDALEKRLGVKLMHRSTRGLALTELGEQL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              +  +  + +  +  +        G L ++     G+  +  +   F  L+P++++  
Sbjct: 66  LDQSRALLREFDELERAVGAGRDLVRGHLVVSAPAAFGRRHVAPHATAFKALHPELRMSF 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+  +  D AIR+ + +   + +  +L          P Y +    P   ++L
Sbjct: 126 NFTDSVVDLVREGYDMAIRIGE-VTDPNYVAVRLFPNRRVVCGTPDYFERHGIPRQPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + F        +   W    D  +   R+   L  N    +  +   G G+    
Sbjct: 185 ARHNCLAFNLA---GGQQRGWSFLRDGRLFAVRVEGDLACNDGELLYGWVKQGLGVGWRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + ++       LV ++++   PS+ +   YP+      K++ F   +  
Sbjct: 242 TWEIQAELKRGELVTVLDEFAVPSYDIQAVYPQQRHLPAKVRRFIEHLRA 291


>gi|254250472|ref|ZP_04943791.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124879606|gb|EAY66962.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 307

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L  F  VAR  +FT AA QL +SQS++SR +  LE  +GI L  R  R ++ TE G
Sbjct: 8   DFNDLVAFMAVARERNFTRAAAQLGVSQSALSRTVRALEARMGIPLLTRTTRSVSPTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  + ++E     L+  + +P+G +RI  T       +   L+  L  YP ++
Sbjct: 68  ERLLESIAPRFQEIEAELESLRAMTDQPAGNVRITATDYAANEYVWPRLQPLLRRYPALK 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ D    D+     D  IRL   +    + QR    + M    +P YL +     + 
Sbjct: 128 VELVNDYGLTDLVAGRYDIGIRLGDQVARDMVAQRIAPDMTMSIIGSPEYLASRPVTKTP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L +HN I     +P      +W  +  R   + R+   L  N+   ++   + G G+A
Sbjct: 188 QDLTQHNCINL--RLPTRNALLSWELSKGRRELQVRVEGQLTFNNVYQMVDAALAGFGLA 245

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P  +V    +   L  ++ED        +  YP   K++  ++   + +
Sbjct: 246 YVPKDLVAHHVEAGRLGWVLEDWFPTFVGHHVYYPSRRKSSRAVELVVDAL 296


>gi|78066385|ref|YP_369154.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967130|gb|ABB08510.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 300

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 10/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +  R F  +  SG  T A+  L + +S++S ++  LE  +G++L  R +R L++T+ 
Sbjct: 2   LDLNDFRYFVRIVESGGLTAASRNLDIPKSTVSHRLQQLEAALGVRLINRTSRSLSVTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  ++E  V+P G +R  T +      ++  L +F+  YP I
Sbjct: 62  GQLFYSHAVTMLERAEVAENAVRERLVEPIGTIRFTTAVATSLYAMRQILPDFIKRYPKI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +   + ++  DI     D A+R    P+  S+L+QRKL       +A+P YL    +P+
Sbjct: 122 DVIEHVSDEQTDIVGGNFDLALRAHNGPLSDSALVQRKLAPAPWFLFASPDYLDRRGQPV 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  EL  H+ +     + +    F W         +  P    L  N  +++ Q    G 
Sbjct: 182 APDELAGHDSL----FVTRHHLPFAWKLKHPSQGEVSVPLKPRLAGNDLVTLKQAAQDGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+  LP Y+ +D   +  L  I+ D +    T+    P        ++ F +F+  +
Sbjct: 238 GVVALPGYVCRDEVRSGALRCILPDWLAGEATITAVLPFRHGMLPSVRVFLDFLVER 294


>gi|27381292|ref|NP_772821.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27354459|dbj|BAC51446.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 291

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 126/293 (43%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V ++ SF  AA  L +  S++SR+IS LE E+G++L  R  R + LTE G 
Sbjct: 4   LNDMALFVEVVKARSFRGAAATLDMPNSTLSRRISLLEKEIGLRLLNRTTRRVELTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +      +L E   +PSG LR++  +D     L   + EF   YP I  
Sbjct: 64  LYFERCKRIVDEARLAHEQLGEMLARPSGLLRVSLPVDFANTYLAPLITEFAQHYPGIDF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  L  + +D+  +  D AIR+ +   +S +I R L  +H + YA+P YL+   EP    
Sbjct: 124 EFDLTPRRVDLVSEPYDLAIRIGES-AASHMIARPLARLHGNLYASPRYLELNGEPREPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  +    +    + +       +            +NS   + +   L  GIA  
Sbjct: 183 DLARHQCLCQTRVSTWTLHNGTQTVEAEIA------GRFHLNSIGMLRRLATLDMGIAFT 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  IV D   +  L RI+        T+Y    E      K + F  F+  + 
Sbjct: 237 PQEIVADEVASGRLRRILPQWQGLPMTIYAVT-ETRLLPAKTQRFIEFLRERL 288


>gi|330830708|ref|YP_004393660.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328805844|gb|AEB51043.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 299

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 140/297 (47%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  V   GS++  A +  +S   + + + GLE  +G KLF++  R  TLTE
Sbjct: 1   MDRLTSMRIFTRVVDLGSYSAVASEEGISAQMVGKHVLGLEQWLGGKLFHKTTRQQTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  +L  T+   Q    +P+G+LRIA  +  G + L   L  FL  YP 
Sbjct: 61  LGQLFLARCQRVLEELALTESLTQNLLAEPAGRLRIAAPLSFGHHRLVPLLPAFLDRYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L  + +D+  +  D AIR  +P Q  +LI R L+T H    AAP YL +   P 
Sbjct: 121 LDLDLQLSPRWVDLVEEGFDAAIRTLRP-QDEALIARPLLTQHYRLCAAPDYLNSHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +          E + ++    +       S L++N + +++   + G+GI
Sbjct: 180 HPADLARHQCLH---GNWGEHERWQFVGEDGQSEEVRVASRLRINHWPALLTAALSGAGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L P   V+D+     L+ +++   +P+ T+YF YP A +   K+    +F+    +
Sbjct: 237 TLQPAEQVRDHIAAGRLLPLLDHYQSPAKTLYFIYPAARRQVLKITLLGDFLAESLQ 293


>gi|323498906|ref|ZP_08103889.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323316018|gb|EGA69046.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 299

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 132/293 (45%), Gaps = 10/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQIS LE ++G+ L  R  R L LT+
Sbjct: 4   QINLADIRSFVLIAQLGNFTKAAEALDVSRSHVSRQISQLEKQMGVTLLMRTTRMLKLTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G   ++   +  + ++   +   E      G+L+I      LG+ ++     +F+ L+P
Sbjct: 64  AGKTFYQQCEKALNDIDQALLTAVEDIEVLQGELKINCVGGYLGEEVIAQVASDFMRLHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I L   +  +D+  D  D A R+ K ++ +  I RKL+ I M   A+P YL      
Sbjct: 124 QITINLDFSSHRVDLIEDEFDIAFRMGK-LEDAGFIARKLMNIEMGTLASPDYLARNESL 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L+ H  +T G +     E  +   + D  +       LQ  +   +++  + G+G
Sbjct: 183 SHPKQLNSHQCLT-GSVKRWSFEHTSLQQSYDVHVN----GHLQCKNGRVLLKGALDGNG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +P    +       L  +  +   PS      Y        +LK F  F+
Sbjct: 238 IIRVPVIYCQQEIKQGALKEVFTNWRVPSVDFSMIYHRDRYQPKRLKLFIEFV 290


>gi|293394647|ref|ZP_06638939.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422773|gb|EFE96010.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 303

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 125/287 (43%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT+ G +  +
Sbjct: 8   EVFVSIVERGSMIAAAEALGMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTDAGERTLQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +  +ESS +  G LRI  +  LGQ  L G + ++L  +P + + L +
Sbjct: 68  RCRQMLQVAQDIDLAQEESSDELRGLLRITCSQSLGQTALVGAVSQYLKRHPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L T      AAP YL     P   Q+L  
Sbjct: 128 NNRAVNLVEERIDLALRITNEL-DPNLIARPLSTCASVVCAAPAYLVAHGTPRQPQDLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                            L  N  + +M   + G+GI+L P Y 
Sbjct: 187 HNCLTYSYFGKSLWH----FEHQGVKSAVAVSGNLSANESVVLMAGTLQGAGISLQPYYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                    LV +M D    S  +Y  Y    +    L+   +F+  
Sbjct: 243 AAPLLAKGELVELMPDYQPQSMGIYGIYTSRRQMPATLRTMLDFLVE 289


>gi|161523786|ref|YP_001578798.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351453|ref|YP_001947081.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341215|gb|ABX14301.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335475|dbj|BAG44545.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 310

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 123/299 (41%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE      GK+R+++T D G+N L   L EF   +PD
Sbjct: 61  EGRLYLNCCRQALQALDDADAMLQEGRNVVGGKVRLSSTSDFGRNQLLDWLDEFTARHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L   +   ++  D  D AIR   P    +LI R+L        AAP +++    P+
Sbjct: 121 VTFSLTASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFIERYGTPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPNDLARFPCNVITIASGPMNTWRFTRGDEVQTYTVPMSNAFETNDGGLTREWTLRGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           AL   + + D+     L  ++ +       ++  Y        +++   +F+  + AR+
Sbjct: 240 ALKSLWDIADDVRAGRLRVLLPEWRHQDAPLHAIYHSKRYMAPRVRVLLDFLAERFARE 298


>gi|320158100|ref|YP_004190478.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
 gi|319933412|gb|ADV88275.1| transcriptional regulator LysR family [Vibrio vulnificus MO6-24/O]
          Length = 303

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 132/290 (45%), Gaps = 10/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA++L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLASFILVVNEGSFTAAAKKLDVTPSALSKLITRLEQALQVKLFERTTRKLLITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 72  YDQSIAMVNAAQQAIEISASDHSEPAGALTVAAPEAFLNSVLQPFVVPFLQQYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+  D  D A +L       +L+ ++L   H+   A+P YL     P    EL
Sbjct: 132 RAADGEIDLFRDNIDVAFKLTDK-PDENLVLKELSKTHLVLCASPDYLAQRGMPSHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +   +     +  F      +            VN     +     G GI +  D
Sbjct: 191 TEHDCLYLAENDKDNLWSF---FKDEAFYSVAVSGRYAVNHSQMRLNGVKQGLGIGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           ++++D      +V++++D +  S     +   YP+      +L+ F +FI
Sbjct: 248 FVIRDALERGEVVKVLDDWMIKSNYHGAIAMQYPQTKYMPARLRVFIDFI 297


>gi|330811022|ref|YP_004355484.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379130|gb|AEA70480.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 332

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 128/294 (43%), Gaps = 10/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  +GSF+ AA Q   S S+ISR IS LE  +  +L  R  R L L++ G 
Sbjct: 10  LAEMAIFVKVVETGSFSEAARQSGSSPSAISRSISRLEKALATRLLQRTTRKLRLSDGGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++ +   E+     +      + + +  G++R++    +G+ ++  ++ EFL  YP + +
Sbjct: 70  EVFKRCQEMVAAARSVMEISGQFTQEAEGRIRVSVPKAVGRFVIHPHMPEFLRRYPKVDV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L+++ +D+  D+ D AIR+        L+ R+L+TI     A P YL     P    
Sbjct: 130 ELFLEDRQVDLIDDHVDLAIRITDQ-PPVGLVGRQLLTIDHLLCATPQYLAEHGTPTHPH 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ I  G         F       + +          N     +   +   GI  L
Sbjct: 189 DLLEHSCIYLGATPNDARWKF---KKGSKSVTVGVHGRYAANHTGVRLGAVLQHIGIGSL 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           P +  +   +   +V+++ D    +     ++  +        KL+ F +++  
Sbjct: 246 PYFTARHALEQGLIVQVLADWTFLASYHGGLWLLHSPTRYLPPKLRVFIDYLVA 299


>gi|302186706|ref|ZP_07263379.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 294

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 11/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  +ISR+++ LE ++G++L +R  R ++LT +
Sbjct: 1   MQLSDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         + H  ET +  L+  +   SG LR+      GQ ++   L   +   P +
Sbjct: 61  GEVFLPHAKTMLHISETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQENPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL    +P  
Sbjct: 121 SIDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCASPDYLTRRGQPSL 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H  IT   +                P+          NS  ++   C  G G+A
Sbjct: 180 LDELRQHPCITLHAMPYWP------FIRDGEPVAIRAQGAFSANSVEAVRTACKQGLGLA 233

Query: 243 LLPDYIVKDNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +L  + V+       ++    EDVI    +V    P   +   +++ F + +  + 
Sbjct: 234 MLTYWDVQQEIREGSLLQIHFEDVIPEQLSVTAVLPTRQRVPNRVRLFVDRLEAEL 289


>gi|187918801|ref|YP_001887832.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717239|gb|ACD18462.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 312

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 135/296 (45%), Gaps = 5/296 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   D +  F  V  +GSF  AAE+++L++S++ + I  LE  +G++L  R  R  +LT
Sbjct: 1   MSDILDGVTTFVRVVETGSFALAAERMNLTRSAVGKVIVRLEKRLGVRLLNRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +        +LE  + +L     +P G+LR++     G   +   L      +P
Sbjct: 61  EDGQAYYDRCVRALAELEAAEADLDSGRREPQGRLRVSVPQAFGHYCVAPVLLGLARKHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D  +R+     S SL  RKL   H    AAP YL     P
Sbjct: 121 QLKIDISITDRFVDVIEEGFDLVVRVGPLADSVSLAARKLGMQHASIGAAPAYLARHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL  H +I +  L     + ++ +    +         L  +    I+   + G G
Sbjct: 181 RNVEELRGHAVIGY--LRAGSAQPWDVVDVDGQIRRAQVQPQLGFDDMKGIVDAALAGFG 238

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A LP +++   +    LV +ME+   P+  ++  +P++     K +   + +  +
Sbjct: 239 LAWLPSWLLTRYEKTGELVTVMENCFRPAQEIHLVWPKSRYLALKTRCAIDALVAE 294


>gi|323529971|ref|YP_004232123.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323386973|gb|ADX59063.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 297

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 128/295 (43%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VA   SFT AA +L  SQS++S     LET +G++L  R  R + LT  G
Sbjct: 5   DLIDLNAFVAVAEERSFTRAAARLLTSQSALSHTSRRLETRLGVRLLTRTTRSVALTPAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +     +  ++ T   +      P G LRI T      ++L   ++EF+  YPDI 
Sbjct: 65  ETFLQGLKPAFEAIDLTLGTVGSLRESPRGTLRITTPRHAAVSVLWPVVQEFVRDYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLS 182
           +++ +D    D++ D  D  IRL + + + +++  K+   + +   A P Y+     P  
Sbjct: 125 VEVNIDAAFRDLADDRFDAGIRLGE-LVAPNMVAVKIGPALRLAIVATPGYVAQRGIPTH 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L +H  I F   +P     + W     R   + R+   L  +    I+   V G G+
Sbjct: 184 PHQLAQHACINF--RLPGSGALYAWQFKKGRQEMKVRVEGPLTFDDPDMILAAAVDGQGV 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A L +        +  LVR++ED  +     +  YP    N+   +   + + ++
Sbjct: 242 ACLIEDHAAPMIRDGRLVRLLEDWCSAFSGYHLYYPTRKNNSAAFRLLVDRLRIQ 296


>gi|28868824|ref|NP_791443.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852063|gb|AAO55138.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 302

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 9/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA +GSFT AAE+L L+ S++S+ +S LE+ +G++LF R  R L LTE+G 
Sbjct: 7   LKGIETFVAVASAGSFTAAAERLSLTNSAVSKSVSRLESRLGMRLFERTTRSLALTEEGV 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H V + +  +LE  +  L     +P+G+LRI      G+  +   + +F   +  ++ 
Sbjct: 67  AYHAVCTRMLAELEAAETALAAQRSEPAGQLRIDLPATFGRLHVLPLILDFAGQHHKLRP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   ++ +DI  +  D A+R+  P+   + +  R L T  +   AAP YL+    P + 
Sbjct: 127 RVTFTDRFVDILEEGIDLAVRIGGPLIWPAGVAHRYLGTERVIFCAAPAYLQRHGTPTTF 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           ++L +H  I FG           WL   ++   E R   + L + +  + +       GI
Sbjct: 187 EDLARHACILFGRGDGSTSP---WLFVDEQGQQEARAIEARLVIGNGEAQVAAVTSAWGI 243

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L  +++KD      LV I+  + T    ++  +P   ++  K++A    +
Sbjct: 244 AQLATWLIKDQLQRGELVEILPQLATEGLALHLAWPRNRESLSKVQALVERL 295


>gi|307309017|ref|ZP_07588697.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306900490|gb|EFN31104.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 295

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 123/293 (41%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA   SFT AA +L  SQSS+S  I  LE  +G++L  R  R +  TE G
Sbjct: 5   ELGDLLAFLAVAEEESFTKAAARLGTSQSSLSLIIKRLEARLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  +  +E     L E   KP+G  RI         +L   L  FLL YPDI+
Sbjct: 65  EQLFSTLAPAFGTIEAQLSALSEFRDKPAGNFRITAGQHSIDTILWPKLSAFLLAYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ ++   DI  +  D  +RL   ++   +  R      M    AP  L++   P + 
Sbjct: 125 VELVAESALTDIVAERFDAGVRLGDQVEKDMIAVRIGPPARMIVVGAPSCLRDRPPPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL  H  I     +P     + W    D      R+   +  N    I++  + G G+ 
Sbjct: 185 QELTTHRCINL--RLPSYGGFYAWEFERDGHEVRVRVDGQVAFNGVPQIVKAALDGFGLT 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + + +V++   N  LV++++D   P    +  YP     +         +  
Sbjct: 243 YVHEDVVREYLKNGRLVQVLDDWTPPFPGYHLYYPSRRHPSPAFTLLVEALKE 295


>gi|307727740|ref|YP_003910953.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588265|gb|ADN61662.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 318

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 139/296 (46%), Gaps = 12/296 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  +  + SFT AAE L++ +++ +  +  LE  +G +L  R  R +++T +G+  
Sbjct: 7   AMRTFIRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTQLLVRTTRRISVTPEGAAY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +++   ++  +  ++ ++   +G+LRI     +   ++   L +F   YP++ + +
Sbjct: 67  YERCAQILADIDEMEASIRHATDNLTGRLRIEMPGAVASAIVLPALDDFHARYPNLDLAI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+ +D+  +  DC+I+L + +  S+L+ R L TI     A+P YL     P  + +L
Sbjct: 127 GVSNRVVDLVSEAIDCSIQLGE-LPDSTLVARHLGTIEHVTCASPAYLARYGTPTDLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLP 245
             H  +    + P    +  +   V+      +++   +V+   + +   + G G+ + P
Sbjct: 186 RGH--VAVNCMSPHNGREVAFDFEVNGEAQTVKVNGFIKVSDEQAYLTCGLQGHGL-IQP 242

Query: 246 DYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKA 294
             I      D+  L  ++         V   Y +  + + +++AF ++   +F KA
Sbjct: 243 ARIAAQPYLDSGQLREVLPQWKPVPMPVSVAYLKNRRVSPRVRAFVDWLADLFEKA 298


>gi|163801286|ref|ZP_02195185.1| LysR-family transcriptional regulatory protein [Vibrio sp. AND4]
 gi|159174775|gb|EDP59575.1| LysR-family transcriptional regulatory protein [Vibrio sp. AND4]
          Length = 297

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 136/302 (45%), Gaps = 12/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + VF  +   GS + AAE L LS++ ++R +  LE  +  +L +R  R L+LT+
Sbjct: 1   MDRLEAMNVFVTIVERGSLSAAAEHLDLSRTKVTRYLGELEKWMDTRLLHRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +   V  E+    E+      ++ V   G+LRI  +  +  + L   +  F+  +P+
Sbjct: 61  AGRETLEVARELLALEESLSGIRNQNRVSLKGQLRITASYSIVNSFLIDAITSFVEQWPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I ++  ++ +++     D AIR+   +  S+++ ++L        A+P Y++    PL
Sbjct: 121 VAIDIVSTDEAVNLVESRIDLAIRVTNALP-SNVVAKQLAECRSVVCASPKYIEQKGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L  HN ++F                 +          +  N+   ++   + GSGI
Sbjct: 180 NAQDLADHNCLSFSYFGRSEWA----FRGPNGDESVSIKGSISANTPEVLLAAALNGSGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKAR 295
           +L P   VK   D   L++++ +    +  V+  Y    + T  L+AF + +      A 
Sbjct: 236 SLQPFPSVKHLLDEGKLIQLLPEWHPRTLGVHAIYGTRKQVTPLLRAFIDHLSDSMKDAE 295

Query: 296 DW 297
           +W
Sbjct: 296 NW 297


>gi|237808739|ref|YP_002893179.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237501000|gb|ACQ93593.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 297

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 141/299 (47%), Gaps = 11/299 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++  +F  +A+ GSFT AA +L +SQS++S  I  LE  + ++LF R  R ++L++ G
Sbjct: 5   NINEFLLFIALAQEGSFTKAAAKLGMSQSALSHAIKALEERIKLRLFNRTTRSVSLSDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L  +    + ++E     L E   K +G +R++++    Q ++   +K+F   YPDI+
Sbjct: 65  ERLLTIIEPRFTEIEDELQLLNEDYHKAAGNIRLSSSDYAAQYIIWPVVKQFAKEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ ++NK  DI  +  D  +R    +    +  R    I       P YL+   EPL  
Sbjct: 125 VEINVENKLTDIVTERYDAGVRFGDQVAKDMIAVRISPDIRFLIVCTPAYLEGKSEPLIP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L KH  I         M  + W    D    + R+      NS   ++   +   G A
Sbjct: 185 DDLLKHQCINMRLNSNGGM--YAWEFERDGKSSKLRVHGQFAFNSPNQVLDATLDNFGFA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            LPD +V    +   LV ++++    +  ++  YP   ++  KL AF   + LKA  +K
Sbjct: 243 YLPDTMVNKYLEAGQLVSVLKEWSPLTPGLHLYYPSRRQH--KL-AFM--LLLKALHYK 296


>gi|218462329|ref|ZP_03502420.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Kim 5]
          Length = 300

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 140/294 (47%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G F+ AA    ++ S++S+ ++ LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERGGFSAAAAVRRMTPSAVSKLVARLEARLGVRLVNRSTRRLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +   +   + +   S  + +G++RI T+   G ++L   L  F+ L+P + + +
Sbjct: 71  YERSIAILADIAEAERQ-ASSGEEAAGRIRINTSGSFGNHVLAPLLPAFMALHPAVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +K ID+  + AD AIR   P++SSSLI RKL        A+P YL+   EP ++ +L
Sbjct: 130 AHTDKVIDLMEERADVAIRAG-PLKSSSLIARKLGATGKIIVASPEYLRRHGEPRTLADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I F     + +E +    +    +  P    +QV    ++    + G+G+A L  
Sbjct: 189 RRHCRIGFS--YARAIEGWPMRES-GETVTIPITPGIQVGDGEAMRHLALSGAGLARLAA 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V+ +     LV ++E+         Y  Y  +      +++A  +F+    R
Sbjct: 246 FTVRADIEAGRLVPVLEEANPGDLEEFYALYIGQGGPLPARVRALLDFLASHVR 299


>gi|322834695|ref|YP_004214722.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169896|gb|ADW75595.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 312

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 127/292 (43%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  V  SGSFT AA +L +S S+IS+ IS LE ++ IKL  R  R + LTE
Sbjct: 1   MDRLKRMSIFAQVVESGSFTAAARRLDMSVSAISQTISKLENDLQIKLLNRSTRSIGLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   ++ H +     +L   +  P+G LRI ++  + QN+L     E L  YP 
Sbjct: 61  AGKLYYQGCRKMLHDVREVHEQLYAFNNTPTGTLRIGSSSTMAQNVLAAMTAEMLTEYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+      D+  D  D  IR+   +Q SSL   +L ++ M   AA  YL     P 
Sbjct: 121 LTVNLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFCTRLGSMPMVVCAARSYLAQHGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              ++   + + +         +F  +A                N   +++++   G GI
Sbjct: 180 KPADMVNFSWLEYSVRPDS---EFELIAPEGVSTRITPQGRFVTNDSQTMIRWLKAGVGI 236

Query: 242 ALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +P   V +  N   +        +    VY  Y E  K   K++   +++
Sbjct: 237 AYVPLMWVIEEINAGEVEILFRRYQSDPRPVYALYTEKDKLPLKVQVCIDYL 288


>gi|299132072|ref|ZP_07025267.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gi|298592209|gb|EFI52409.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 314

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ + +F  V    SF  AA +L LS++++S+ ++ LE  +G +LF R +R L LT+ G
Sbjct: 6   DFEAMAIFAKVVELRSFAAAASELALSKATVSKAVTRLEERLGARLFNRSSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +++    E  + E    +  P G +R+A  +  GQ ++   L EFL  YPD+ 
Sbjct: 66  RALSVRAAQLLADGEEAENEALSQAASPRGLVRLAVPMTFGQRVIAPLLPEFLAQYPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  +  D  +R+ + +  SSL+ R+L  + ++  AAP YLK    P   
Sbjct: 126 IDLHLSDAMVDLIGEGFDIGVRIAR-LPDSSLVARRLCPMPVYTVAAPSYLKKYGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H   T+        E +++       +       L++N+  +++   + G GIA 
Sbjct: 185 MHLAQHRCFTYA--YRTTPEVWHYFNDAGEAVSVRPSGQLRINNGEAVLPALIAGLGIAD 242

Query: 244 LPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPD+I+ +     ++   ++    P   V+   P       +++A   F+
Sbjct: 243 LPDFIIGEAIARKQVEVILKGWKQPEGAVHLVMPPGGPRPARVEALVEFL 292


>gi|325525802|gb|EGD03530.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 317

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 126/299 (42%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 16  PLDLLDVGLFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G       + +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 76  DGEVFMARAAALLSAADAARASVGHGRSEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPS 135

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  D AIRL   ++ S+L+ RKL         +P YL     P 
Sbjct: 136 VSLDLRLSDELVDLVDEGYDVAIRLGA-LKDSTLVARKLAVNRRVLCCSPAYLAERGTPR 194

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L++H  +  GD            AT   P+       L  ++  +I +  V G GI
Sbjct: 195 HPLDLEQHECVILGDQRDWS------FATPQGPLTVRVGGRLVASNGEAIREALVDGFGI 248

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+   + V     +  LV +++D        ++  YP       K  AF  F+     D
Sbjct: 249 AIKSTWDVGPLLASGALVTVLDDYPFADDVAIWAVYPSRAHVPLKTLAFIAFLAEHFGD 307


>gi|241662694|ref|YP_002981054.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240864721|gb|ACS62382.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 298

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 139/300 (46%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L+LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLDTTLLSRTTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  + ++     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGATFLAQARRILAAVDEAEEQIALRRQQPAGRLRVNAAMPFMLHVVAPLVPDFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  ++  ID+  +  D AIR+   ++ S+L  R L T  +   A+P YLK    P
Sbjct: 121 QIDLELNTNDLIIDLLEEDTDVAIRIG-TLRDSTLRARLLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H L+ F       +         DR   EP    L+ +S  ++ Q  + G+G
Sbjct: 180 RNVDDLQTHALLGFVQPESLNLWPLRG-PHGDRLRIEP---TLKASSGETLRQLALQGTG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L D++    + +  LV+++ D        ++  Y    +   ++  F +F+  +  D
Sbjct: 236 IVCLADFMTVEDRRSGALVQVLPDATVEVLQPIHAVYYRNTQLASRIACFLDFLEARLAD 295


>gi|170697513|ref|ZP_02888603.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137536|gb|EDT05774.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 291

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V ++  F  AA+ L +  S++SR+IS LE  +G++L +R  R + LTE G 
Sbjct: 4   LNDMALFVEVVKARGFRSAAQTLGMPNSTLSRRISALEKAIGLRLLHRTTRRIELTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +      +L     +P+G LR +  +D     L   + EF   YP +  
Sbjct: 64  LYFERCKRIVDEARLAHEQLGGLLAEPAGVLRASFPVDFAVTYLAPLIVEFANRYPKLTF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L ++ +D+  +  D AIR+  P + S L+ R+L T+  + YA+P YL    EP   +
Sbjct: 124 DFELTSRRVDLVSEPFDVAIRIG-PSEDSQLVARRLATLRNYLYASPGYLARAGEPREPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  +         + D        R +     S   VNS   + +   L +GI +L
Sbjct: 183 DLARHACLGLQKSGSWTLHDGT------RSVAVAVSSRFAVNSVGMLRRLATLDAGIIVL 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + I+ D+     L R+M +       VY    E      K + F  F+  
Sbjct: 237 SEEILADDVAAGRLRRVMPEWEGEPIPVYAMT-ETRLLPAKTQHFIEFLRA 286


>gi|157369242|ref|YP_001477231.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321006|gb|ABV40103.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 302

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 126/297 (42%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V     F  A+  L + +S +SR+++ LE  +G++L  R  R  ++T
Sbjct: 1   MFTDLNDLFYFAAVVDHQGFAPASRALGIPKSKLSRRVALLEERLGVRLIQRSTRRFSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +     +  + +  Q  ++++  +P G +R++  + +    +   +  F+  YP
Sbjct: 61  DVGQNYYAHCKAMLVEADAAQQAIEQTRAEPCGTVRMSCPVAILHTRVGSMVAAFMADYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + + L   N+ +D+  +  D AIR+R  P++ S L+ + L        A+P  ++    
Sbjct: 121 KVTVHLDATNRRVDVVGEGLDLAIRVRPPPLEDSDLVLKILAQRTWCIAASPALVRTLGP 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               ++L K+  +  G    +    +         +       L  +  L +    + G+
Sbjct: 181 VQRPEDLHKYPTLDLGPA--RAQHLWQLTGPDGEKVEWEHRPRLVTDDMLMLRTAAIAGA 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  LP  +++D+     LV+++         V+  YP        ++   +++  +
Sbjct: 239 GIVQLPSMMMRDDMLRGELVQLLPGWQPQGGVVHAVYPSRRGLLPAVRLLLDYLAQQ 295


>gi|91783490|ref|YP_558696.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687444|gb|ABE30644.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 317

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 119/299 (39%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + + A  +  LS +  S +I+ LE  +G +L +R  R ++LT+
Sbjct: 17  RLDLLDVALFVRAALLANVSAAGREFGLSAAVASSRIAQLEKLLGARLLHRTTRRISLTQ 76

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +       +  +  +  +P G+LR++     G+  +   + EFL  YP 
Sbjct: 77  DGEVFMTRAEALLDAAAAARASVGRAQAEPQGRLRVSMPSSFGRQHVSPVISEFLRRYPG 136

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ ID+     D AIR+   ++ SSL+ R+L        AAP YL     P 
Sbjct: 137 VSVDLRLTDQVIDLVDAGIDVAIRVG-VLKDSSLVARRLAVNRRVLCAAPAYLAERGTPH 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +   D             T   PI       L  ++   I    + G GI
Sbjct: 196 HPSDLAQHECMILSDQRDWA------FVTPAGPIEVRVSGRLVTDNGEVIRDALLAGFGI 249

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           AL   + V     +  LV +++         ++  YP       K  AF +F+     D
Sbjct: 250 ALKSTWDVAPFLRSGELVSVLDSYPLAERVAIWAVYPSRSFVPPKTLAFIDFLAAHFGD 308


>gi|254521894|ref|ZP_05133949.1| regulatory protein, LysR:LysR, substrate-binding [Stenotrophomonas
           sp. SKA14]
 gi|219719485|gb|EED38010.1| regulatory protein, LysR:LysR, substrate-binding [Stenotrophomonas
           sp. SKA14]
          Length = 301

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 130/289 (44%), Gaps = 9/289 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + L  F   ARSGSFT AA+ L +S+S++ + I+ LE  +G++LF+R  R + LT  G
Sbjct: 6   SLNGLVTFVTTARSGSFTEAADALGISRSAVGKAIARLEARLGVRLFHRTTRRIALTTDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   +    ++   +     S+  PSG+LRI      G+ ++   L      YPD+Q
Sbjct: 66  EAYYASCAAALEEISAAEA-CLGSAGLPSGRLRIDMPSSFGRLVVLPVLLRLCRQYPDLQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   +  +D   +  D  IR     Q+  L+ R+L    +   AAP YL+    P ++
Sbjct: 125 LTMTFTDHFVDPVEEGIDLLIRFGGLHQAEHLVARRLGRQRLVTCAAPAYLRAHGTPQTV 184

Query: 184 QELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +EL +   ++ F    P        + + D        +  Q+N   +++   + G GI 
Sbjct: 185 EELAQQRSIVGFRHGQPVAWR----IGSDDAEGTFIPNAAYQLNDGDAVIDGAIAGLGIC 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P+ +V+    +  L  +++  +     ++  +P       K++   +
Sbjct: 241 QMPESLVRRHLQSGALQSVLDAHMQRHIDIHALWPPTRHLRPKVRYVVD 289


>gi|194431656|ref|ZP_03063947.1| HTH-type transcriptional activator TtdR [Shigella dysenteriae 1012]
 gi|194420012|gb|EDX36090.1| HTH-type transcriptional activator TtdR [Shigella dysenteriae 1012]
 gi|320179307|gb|EFW54265.1| Putative transcriptional regulator LYSR-type [Shigella boydii ATCC
           9905]
 gi|332086941|gb|EGI92076.1| HTH-type transcriptional activator ttdR [Shigella dysenteriae
           155-74]
          Length = 310

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLSRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|261344698|ref|ZP_05972342.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
 gi|282567618|gb|EFB73153.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
          Length = 301

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 126/296 (42%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  +  V   G F+ A   L + +S +SR+I+ LE ++ + L YR  R   +T
Sbjct: 1   MQYDLNDLYYYVKVVECGGFSQAGLALGIPKSKLSRRIADLEQKLNVSLIYRSTRQFHVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++    V  +       +      P G ++++  + L Q  LQ  L +F++ YP
Sbjct: 61  EIGQVFYQQCKNVVDEANIAHELICSVQTHPKGTIKLSCPVALLQVYLQDLLIDFMVKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           DI +Q++  N+ +D+  +  D A+R+R  P+  S L+ + L        A+P       E
Sbjct: 121 DIDVQILAVNRPVDVISEGLDLALRVRSLPLDDSGLMMKVLGYSRRVLVASPSLFIEKGE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++L  + ++  G+               D    +     L     L++    + G 
Sbjct: 181 PTEPEQLVNYPML--GNTEHSQRYTLTLKNNDDLSFTQHFTPKLATTDVLTLYHAALKGV 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA LP  +V+       LV ++ +   P   ++  YP        ++   +++  
Sbjct: 239 GIARLPLGVVEKELQTGALVEVLPEWKFPEDIIHAVYPSRKGLLPSVQLLLSYLAE 294


>gi|170699001|ref|ZP_02890059.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136108|gb|EDT04378.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 295

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 130/288 (45%), Gaps = 6/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R + G+E  +G +L  R  R L+LT+ G    
Sbjct: 7   MRLFIKVAELHSFARAATELNISNSSATRLVMGIEDRLGARLLNRTTRSLSLTDAGHLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  +     +P G L+IA  +  G ++L   +  F  L+P I  ++ 
Sbjct: 67  AQIRHVIEEIDRVEETIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTLHPAIVPEVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+     D  + L + I +++L+ R L  +     AAP Y++    P+   +L 
Sbjct: 127 IVDRHVDLVSGGFDVGLLLSQRISTNTLVTRPLTRLKRIVCAAPRYVEAHGAPIHPHDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +TF           +   T  R    P  S    N+   I  + + G GIA+LPD+
Sbjct: 187 SHACLTFHADFAGEYRSSDHEPT--RVAVRPNKSA-SSNNIGLIRNWALSGMGIAVLPDF 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +V+    +  L+ ++ D       +   YP       K + F + +  
Sbjct: 244 LVESDLADGRLLALLPDYRLEELEMNIAYPSRRHFPRKTRLFVDHLVE 291


>gi|198244448|ref|YP_002216879.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197938964|gb|ACH76297.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326624642|gb|EGE30987.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 303

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARHPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHKRLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    +   L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALEEGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|56695772|ref|YP_166123.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56677509|gb|AAV94175.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 307

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 134/299 (44%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  + ++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRISPAVTSARISQLEDHLNVRLFQRTTRNLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++  + ++   +  P G L +A  + LG+ LL  N+ +FL  YP
Sbjct: 60  EQGRAFYPGAVAVLDAVDEAEAQVMHLTEAPRGSLFVAAPLGLGRRLLAPNVPDFLAQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I I+L L ++ ID++ +  D A  L +P + S+L  RK+        AAP Y+K    P
Sbjct: 120 EIDIRLRLTDRTIDLTTEGLDLAFFLGQP-EDSNLRIRKIADCRRVLCAAPDYVKRRGLP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            + Q+L   +H  +      P   E    L T + P         + +    +  + + G
Sbjct: 179 ATGQDLITGRHECLNL--RFPGATEFQWLLQTAEGPRRFAVSGRHECDDGDVLTDWALTG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIA+ P + V ++     LV +  D    +  +   Y        K + F  F+  + 
Sbjct: 237 QGIAMKPVFEVAEHLKAGRLVPVAVDTPPVTVQMACLYTHRRHQDPKTRLFMEFMIERV 295


>gi|83747420|ref|ZP_00944459.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207722193|ref|YP_002252630.1| hypothetical protein RSMK03682 [Ralstonia solanacearum MolK2]
 gi|207744764|ref|YP_002261156.1| hypothetical protein RSIPO_02977 [Ralstonia solanacearum IPO1609]
 gi|83725877|gb|EAP73016.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206587368|emb|CAQ17951.1| hypothetical protein RSMK03682 [Ralstonia solanacearum MolK2]
 gi|206596174|emb|CAQ63101.1| hypothetical protein RSIPO_02977 [Ralstonia solanacearum IPO1609]
          Length = 303

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 121/294 (41%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   GS   AA    ++   I R+I+ LE  +G++L +R  R + +TE
Sbjct: 1   MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVRLLHRSTRRIAVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG+       +   +L+  ++ + E   K +G L ++     G+  +  +  +FL   PD
Sbjct: 61  QGAVFMEQCKKALSELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPDFLRANPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++   L ++ +D+  +  D  IR+   I   + +  +L +        P Y      P 
Sbjct: 121 VRLSFNLTDRVVDLVREGYDLGIRIGGAI-DPNFVAIRLASNKRVVCGTPAYFARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +HN + F     +    +       R +       L  N    + ++     G+
Sbjct: 180 TLDDLSRHNCLAFNLQGGQQRGWY--FQHHGRMVTVKVSGNLDCNDGELLHRWMGESLGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                + ++   ++  L+ +++D   P + +   YP+      K++ F   +  
Sbjct: 238 GWRSTWEIQPELESGALITVLDDYALPDYDILAVYPQQRPVPAKIRFFIEHLKA 291


>gi|293395485|ref|ZP_06639769.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422169|gb|EFE95414.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 331

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/286 (25%), Positives = 135/286 (47%), Gaps = 5/286 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LRVF  VA  GSF  A+E L + ++++S  I  LE E+G +LF+R  R + LT  G +L
Sbjct: 32  RLRVFIQVADVGSFVRASELLLMPKTTVSAAIQQLENEMGARLFHRTTRRVQLTGDGERL 91

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +       Q +     G+L +     + + ++   L +F L YPDI++ L
Sbjct: 92  LEHARSLLDDVAALDNLFQPAGSPIGGRLAVDVPSRIARRIIVPALPDFFLQYPDIELFL 151

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ ID+  +  DC +R+   +  SSLI   L  + M   A+P YL+    P   ++L
Sbjct: 152 SSSDRTIDLVQEGMDCVVRVGS-LSDSSLISHTLGQLSMVNCASPTYLQRHGTPQDNRQL 210

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H ++ +          + W    +      R S + VN+  + +  C++G G+  +P 
Sbjct: 211 ADHWVVGYAQPSLLSANCWQWRHNGEIVEHTLR-SKVTVNNVENYIGSCLVGMGLIQIPR 269

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + ++   D+ +LV ++     P+  +   YP   + T +  AF ++
Sbjct: 270 FDIQHFLDDGSLVEVLPQARAPAMRISLLYPHRRQRTARFSAFADW 315


>gi|251791013|ref|YP_003005734.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247539634|gb|ACT08255.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 300

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 132/290 (45%), Gaps = 5/290 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             +RVF  +  + SF+ AAE+L L ++++S+ +  LE  +G++L  R  R + +T++G  
Sbjct: 5   QAMRVFVRIVETESFSRAAEKLGLPRATVSQTLKRLELRLGVRLLQRTTRQVQVTDEGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++  +++ T         +PSG++RI     L + ++  +L  F   YP I + 
Sbjct: 65  YYQRCVQLLAEIDETDALFSHQRQQPSGRVRIDMPHSLARQVVIPSLPAFYRRYPQISLV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  ++  I++  +  DC +R  + ++  SL+ R L ++     A+  Y      P S++ 
Sbjct: 125 LSANDAAINVLREGVDCVLRAWR-VEDDSLVARALPSLPQVTCASAAYCAEFGVPDSLEA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H ++++  L         ++    + I       +++N   + +  C  G GI   P
Sbjct: 184 LTSHRMVSYFSLRTSQRYPLEFMQQ-GQLITRSLPGLVEINGADAYIAACQAGMGIIQAP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            Y +     +  LV I+  +  P   +Y  YP       +++    ++  
Sbjct: 243 RYGLASLLASGELVEILPQLPPPDMPLYVMYPSGRFLAPRIRVVIEWLVQ 292


>gi|209809672|ref|YP_002265211.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
 gi|208011235|emb|CAQ81669.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
          Length = 311

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 130/302 (43%), Gaps = 15/302 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L  S ++++ ++  LE   G+KL  R  R L+LT+
Sbjct: 1   MDKFSDMTMFVSIVKHQGLAAAGRELGFSPATMTARLQALEERYGVKLLNRSTRHLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+   +  T+  ++    +  G LRI+   D+G+  +   L EF   +P+
Sbjct: 61  SGELYHKACIEILDNVNETENLIRNGVKEVKGSLRISAPKDIGRQYILPILSEFCKQHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L+++  +I+    D  IR  + +  SSLI R+L        A+P YL     PL
Sbjct: 121 VVPYLYLNDRISNIAESGIDIVIRYGE-LADSSLISRRLSPSKRVLCASPEYLAQHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L  H+ +    +I    E   W    +       I   +  +    I  + + G G
Sbjct: 180 TPQDLVNHDCLA---MIRSNEELKTWHFQDEDQKSVITIIPKRFSDDGEVIRHWALEGVG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVI------TPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +AL     V+   +N  LV ++   +      T S  ++  Y        +++ F +F+ 
Sbjct: 237 VALKSALDVQADIENKRLVTLLNGHMKNFNSSTSSADLHVLYISKKYQPKRIRLFLDFLH 296

Query: 292 LK 293
            +
Sbjct: 297 ER 298


>gi|300693175|ref|YP_003749148.1| transcriptional regulators, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299075212|emb|CBJ34499.1| putative transcriptional regulators, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 301

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 125/296 (42%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L  F  +A   +F  AA  L +S S++S  +  LE  +G++L  R  R + LTE G 
Sbjct: 6   LSELTAFIAIAEQRTFRAAAGVLGVSPSALSHAMRNLEARLGVRLLNRTTRSVALTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R        LE    E+     +PSG +RI+ + +  + L++  L +FL  YPDI +
Sbjct: 66  QLLRRVRPAVADLEDAVNEVASERNRPSGSIRISASENAARPLVRHVLPDFLAAYPDIHV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + ++D + +DI  D  D  IRL + +    +  R    +   A A+P YL     P    
Sbjct: 126 ECVVDTRLVDIVADGFDAGIRLLEDVPRDMIAVRFGPDMRFVAVASPAYLSRHAPPERPH 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I F             L              L + +   +++  + G GIA +
Sbjct: 186 DLTQHRCIRFRFESGALYRWD--LERRGTAASVNVDGPLTLGNLNLMVEAALAGIGIAWV 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P+ +V +   +  LV ++ +       +   YP        L+ F        R+W
Sbjct: 244 PENLVAEPVADGRLVHLLPEWSPSLSGLCLYYPANRHPPTALRLF----AQAVREW 295


>gi|258623412|ref|ZP_05718415.1| HTH-type transcriptional regulator [Vibrio mimicus VM573]
 gi|258584227|gb|EEW08973.1| HTH-type transcriptional regulator [Vibrio mimicus VM573]
          Length = 302

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 121/297 (40%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +  R F  V   GSFT AA  L L+Q  IS+ +S LE +VG KL +R  R + +T
Sbjct: 1   MELDLNAARCFVKVVELGSFTQAANLLGLTQPGISKAVSRLEAQVGAKLIHRSTRQVRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    + +  E    EL+ S   P G L+++    L  +L+   +K     YP
Sbjct: 61  EDGQLFMKRIQPLIYGFEEAHNELKFSKTTPVGCLKLSAPSALSHSLMMPIVKLLTERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L L ++ + +  +  D  +R    I    L+   L        A+P YL     P
Sbjct: 121 GLRIELSLTDQKVHVFDEGYDAVLRFGS-IDDERLVAFALQDAEWVTVASPEYLAKQGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLG 238
               EL   N +              W   +D    E R  +  +  +    ++   + G
Sbjct: 180 HHPDELRNFNCLHVK--ARSQTNTLPWRFRIDGKGIEYRQLVGNVCFDHGDPLIDAALQG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G   +   +V D   N  L  I+ D    + + +  YP + + + KL   R  + L
Sbjct: 238 LGAVQVLRCVVTDKLANGELKEILTDFRPQAHSFHLLYPPSRQRSAKLTVLREALIL 294


>gi|229528114|ref|ZP_04417505.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229334476|gb|EEN99961.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
          Length = 308

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 131/304 (43%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE
Sbjct: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP+
Sbjct: 61  SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  SSLI RKL T      A+P YL     P 
Sbjct: 121 VVPYLYLNDNISNLAESGLDVVIRYGE-LADSSLISRKLATSRRVLCASPVYLARKGIPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W    +       +      +    I Q+ + G G
Sbjct: 180 TPQDLAQHDCLA---MVRSNEEMKTWHFQENEQHKVITVVPKSFADDGEVIRQWALAGMG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+D+     LV +++  +             +   Y        +L+ F +F
Sbjct: 237 IALKSILDVQDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LIEQ 300


>gi|15641957|ref|NP_231589.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121590661|ref|ZP_01677995.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121727817|ref|ZP_01680884.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147674306|ref|YP_001217483.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153818749|ref|ZP_01971416.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153822450|ref|ZP_01975117.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227082084|ref|YP_002810635.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229507953|ref|ZP_04397458.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229511811|ref|ZP_04401290.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229518948|ref|ZP_04408391.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229607498|ref|YP_002878146.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254849041|ref|ZP_05238391.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255745293|ref|ZP_05419242.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262156017|ref|ZP_06029137.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1]
 gi|262167909|ref|ZP_06035609.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
 gi|298498011|ref|ZP_07007818.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9656494|gb|AAF95103.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121547504|gb|EAX57610.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121629853|gb|EAX62267.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|126510712|gb|EAZ73306.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126520026|gb|EAZ77249.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146316189|gb|ABQ20728.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|227009972|gb|ACP06184.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227013852|gb|ACP10062.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|229343637|gb|EEO08612.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229351776|gb|EEO16717.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229355458|gb|EEO20379.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229370153|gb|ACQ60576.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254844746|gb|EET23160.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255737123|gb|EET92519.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262023636|gb|EEY42337.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
 gi|262030195|gb|EEY48839.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1]
 gi|297542344|gb|EFH78394.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 315

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  
Sbjct: 8   QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +   Q E+++   +  G +R+  +   G   +   L++    YP++ +++
Sbjct: 68  YAQCRELLTIVTNAQSEMEDQRDEVVGLIRLGLSQSFGTLHVLPALEQLRQQYPELNVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++        A+P YL     P     L
Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASPDYLLRYGSPTEPMAL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + +        +   W  + D      +++    V+   ++    V G GIA L 
Sbjct: 187 MEHNCLIYRS---WERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            Y+++D      L++++ +         Y  YP       K  A   FI  + 
Sbjct: 244 TYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRL 296


>gi|15833197|ref|NP_311970.1| transcriptional activator TtdR [Escherichia coli O157:H7 str.
           Sakai]
 gi|168754028|ref|ZP_02779035.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4401]
 gi|168760219|ref|ZP_02785226.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4501]
 gi|168767081|ref|ZP_02792088.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4486]
 gi|168773285|ref|ZP_02798292.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4196]
 gi|168781934|ref|ZP_02806941.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4076]
 gi|168785932|ref|ZP_02810939.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC869]
 gi|168797649|ref|ZP_02822656.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC508]
 gi|195937204|ref|ZP_03082586.1| transcriptional activator TtdR [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808706|ref|ZP_03251043.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4206]
 gi|208814410|ref|ZP_03255739.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4045]
 gi|208821755|ref|ZP_03262075.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4042]
 gi|209395880|ref|YP_002272533.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4115]
 gi|217326801|ref|ZP_03442884.1| lysR substrate binding domain protein [Escherichia coli O157:H7
           str. TW14588]
 gi|254795011|ref|YP_003079848.1| transcriptional activator TtdR [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228072|ref|ZP_05942353.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261254928|ref|ZP_05947461.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284439|ref|YP_003501257.1| transcriptional activator TtdR [Escherichia coli O55:H7 str.
           CB9615]
 gi|118574169|sp|Q8XBK9|TTDR_ECO57 RecName: Full=HTH-type transcriptional activator ttdR
 gi|13363416|dbj|BAB37366.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. Sakai]
 gi|187770892|gb|EDU34736.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4196]
 gi|189000617|gb|EDU69603.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4076]
 gi|189358470|gb|EDU76889.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4401]
 gi|189363827|gb|EDU82246.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4486]
 gi|189369350|gb|EDU87766.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC4501]
 gi|189373830|gb|EDU92246.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC869]
 gi|189379803|gb|EDU98219.1| HTH-type transcriptional activator TtdR [Escherichia coli O157:H7
           str. EC508]
 gi|208728507|gb|EDZ78108.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4206]
 gi|208735687|gb|EDZ84374.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4045]
 gi|208741878|gb|EDZ89560.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4042]
 gi|209157280|gb|ACI34713.1| transcriptional regulator, trunscation [Escherichia coli O157:H7
           str. EC4115]
 gi|209759298|gb|ACI77961.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209759300|gb|ACI77962.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209759302|gb|ACI77963.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209759304|gb|ACI77964.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|209759306|gb|ACI77965.1| putative transcriptional regulator LYSR-type [Escherichia coli]
 gi|217319168|gb|EEC27593.1| lysR substrate binding domain protein [Escherichia coli O157:H7
           str. TW14588]
 gi|254594411|gb|ACT73772.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|290764312|gb|ADD58273.1| transcriptional activator TtdR [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189411|gb|EFW64070.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640133|gb|EFX09705.1| transcriptional activator TtdR [Escherichia coli O157:H7 str.
           G5101]
 gi|320645431|gb|EFX14440.1| transcriptional activator TtdR [Escherichia coli O157:H- str.
           493-89]
 gi|320650742|gb|EFX19199.1| transcriptional activator TtdR [Escherichia coli O157:H- str. H
           2687]
 gi|320661810|gb|EFX29218.1| transcriptional activator TtdR [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666961|gb|EFX33937.1| transcriptional activator TtdR [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337763|gb|EGD61597.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. 1125]
 gi|326347328|gb|EGD71053.1| Putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. 1044]
          Length = 310

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVY 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|304410195|ref|ZP_07391814.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307302094|ref|ZP_07581852.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304351604|gb|EFM16003.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306914132|gb|EFN44553.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 314

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 122/308 (39%), Gaps = 19/308 (6%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT 
Sbjct: 1   MDRLEAAKVFVTIVERGSMVSAANALDMSRSMVTRYLSEMEEWSGARLLHRSTRSLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +             S   P G LRI+ +  L   +L   + ++L  YP 
Sbjct: 61  AGEQVLDYCHRLLELANEVPAVSHASVAIPRGLLRISCSQFLAHQILAPVVHQYLASYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             + + + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      L
Sbjct: 121 ASVNIHVSSQTVDLVAERIDLAIRITNEL-DPNLIARRLGECESVVCAAPSYLAARAAVL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDF--------------NWLATVDRPIGEPRISCLQVNS 227
             ++L +HN +T+          +              +      +    P       N 
Sbjct: 180 HPEDLTQHNCLTYSYFGDVMWRFYQTDVAAKQAQALNSDLTLNQGQAFNVPVNGNFSAND 239

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y         L+
Sbjct: 240 SMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVYQSRKHMQPALR 299

Query: 285 AFRNFIFL 292
              + +  
Sbjct: 300 VMMDMLVA 307


>gi|153008129|ref|YP_001369344.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560017|gb|ABS13515.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 300

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 126/277 (45%), Gaps = 7/277 (2%)

Query: 17  SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76
            GSF  AA +L ++ S++S  ++ LE  +G++L  R  R +  TE G +L    +    +
Sbjct: 18  HGSFRGAARELAIAPSAVSHAVATLEDSLGVRLLARTTRSVAPTEAGRQLLERLAPALEE 77

Query: 77  LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136
           +        +S  +PSG LRI       Q ++   L EF   YPDI + L ++N   DI 
Sbjct: 78  INAALGAAVDSRDRPSGVLRITAPYVAAQLVIAPRLGEFARAYPDITLDLRVENGFTDIV 137

Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGD 196
               D  +RL + +++  +  R    +     AAP+Y  N   P+  ++L +H  I    
Sbjct: 138 AAGFDAGVRLGESLEADMIATRLTGNVRAAIVAAPNYFDNRSAPVEPRDLLQHACIRHRF 197

Query: 197 LIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---N 252
              +    + W       + E  I   L VN    I++  + G+G+A L +  V D   N
Sbjct: 198 PSGRT---YRWEFEKAGEVQEIAIEGPLIVNDDRVILEAALNGTGLAYLFEAYVHDALAN 254

Query: 253 PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             LVR++ED   P   +Y  YP   +    L+AF +F
Sbjct: 255 GRLVRVLEDWCQPFAGLYLYYPSRRQMRPALRAFIDF 291


>gi|149926329|ref|ZP_01914591.1| LysR protein [Limnobacter sp. MED105]
 gi|149825147|gb|EDM84359.1| LysR protein [Limnobacter sp. MED105]
          Length = 295

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 133/288 (46%), Gaps = 10/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  V  +GSFT AA+ L LS++++++ I  LE  + IKL  R  R + +T  G+  +
Sbjct: 1   MKAFVRVVETGSFTKAADTLGLSRTTVTQLIQQLEAHLRIKLLNRTTRKVNVTNDGAAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L   +  L  +S  P G LR+         +L   L +F   +P IQ++L 
Sbjct: 61  ERVVRLLTELSEIENSLPSASSAPRGLLRVDVPSPFANIVLVPALPDFFAQFPGIQLELG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  D  DC +R    I   +LI R +  + +  YAAP YLK    PL   EL 
Sbjct: 121 ASDRKVDLISDNVDCVVR-GGEITEGALIARHVGDLQLGVYAAPSYLKRSGTPLHPHELR 179

Query: 188 --KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             +H ++ +        E    +      +     S L+++   + +   ++G G+  LP
Sbjct: 180 ESEHRIVRY----RWANEIPYAMYKDGERVRLQGRSMLEIDDGNAYLTAGLVGLGVLWLP 235

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +Y+ K   ++  LV++  D    S  +Y  Y      + +L+ F  +I
Sbjct: 236 EYMAKSHIESGALVQLFLDWQLDSMPLYVAYAPNRYASKQLRVFIEWI 283


>gi|77458585|ref|YP_348090.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382588|gb|ABA74101.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 321

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 140/295 (47%), Gaps = 9/295 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  V R  SF  AA++L  S + +S++IS LET +  KL +R  R + LT+ G +
Sbjct: 28  EDLKVFLTVIRKNSFASAADELGFSPAYVSKRISVLETTLASKLLHRTTRRIALTDDGER 87

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +     ++    +    E+ ++  +P+G L I ++   G+N +   + +     P + I+
Sbjct: 88  VRIWAEKLLGDFDQFLGEISQARHQPAGSLHICSSFGFGRNHVAPAISQLSRACPKLDIR 147

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D+  +  D  I +   +    L  RKLV+      A P YL+    P S+++
Sbjct: 148 LDVFDRVVDLVGEGFDLEILVGDDLPGQHL-ARKLVSNRRVLCATPEYLERRGTPQSLED 206

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  H+ +   +   +      W  + D      R++  L  NS   ++++ + G GI L 
Sbjct: 207 LKDHDCLVLKE---RNNAFGIWTLSKDGQEETVRVNGPLSSNSGEIVLEWALSGGGILLR 263

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             + VK   +   LV++++   T S  V+  YP  L  + KL+    F+    RD
Sbjct: 264 SMWDVKPMLEQGRLVQVLDGY-TQSANVWAVYPTRLSESAKLRVCVEFLEEYFRD 317


>gi|167647200|ref|YP_001684863.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167349630|gb|ABZ72365.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 305

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 121/292 (41%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +  L  F  +A   SF  AA+ L +S+SS+S  +  LE  +G++L  R  R +  T+ G
Sbjct: 5   TFADLTAFSAIAEHRSFRAAADALGVSRSSLSHAMRALERNLGVRLLNRTTRSVFPTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          L+    E+ E   +PSG+LRI       + LL+  + +FL  +P ++
Sbjct: 65  QRLLARLGPALRDLDAALDEVAEDRGRPSGRLRINANEIATRRLLRDVVPQFLARHPAVE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++ D + IDI  +  D  IRL +      +  R    +   A A+P Y  +   P + 
Sbjct: 125 LDIVTDGRLIDIVAEGFDAGIRLYETTPKDMVAVRLGDDVRFLAVASPSYFADHAPPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I     +P             + +       L ++    ++   + G G+A 
Sbjct: 185 DDLQHHQCI--RHRLPSGKRYRWEFERFGQEVAIDAPGSLTLDHTGLMVDAALDGLGLAY 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +PD   +       L+ ++ D       +   YP +      L+AF + +  
Sbjct: 243 VPDLAAEPYLKTGELIAVLTDWCPSIPGLCLYYPGSRHVPASLRAFIDVLKE 294


>gi|28870256|ref|NP_792875.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853503|gb|AAO56570.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 307

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 126/297 (42%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  ++SR+++ LE ++G++L +R  R ++LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAVSRRLAALENDLGVRLVHRTTRSVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    E  +  L+  +   SG LR+      GQ ++   L E +L  P +
Sbjct: 61  GEVFLPHAKTMLQASEAARATLKADAGTASGILRVTAPSVFGQTVIMPLLPELMLENPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL     P  
Sbjct: 121 SIDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCASPDYLVRRGTPTV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H  I    +                P+          NS  ++      G G+A
Sbjct: 180 LDDLRHHPCIALHGMPYWS------FTRGGEPVTIRAQGSFSANSVEAVRTASKQGLGLA 233

Query: 243 LLPDYIVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +L  + ++      +L +I  ED +    ++    P   +   +++ F + +  + +
Sbjct: 234 MLTYWDIQQEIREGSLRQIDFEDALPEQLSITAVLPTRQRVPHRVRLFVDRLEAELQ 290


>gi|16128867|ref|NP_415420.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107750|ref|AP_001530.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160423|ref|YP_001457741.1| LysR family transcriptional regulator [Escherichia coli HS]
 gi|170020698|ref|YP_001725652.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739]
 gi|170080558|ref|YP_001729878.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|194438712|ref|ZP_03070799.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|238900158|ref|YP_002925954.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|253774071|ref|YP_003036902.1| LysR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161014|ref|YP_003044122.1| putative DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|256023399|ref|ZP_05437264.1| predicted DNA-binding transcriptional regulator [Escherichia sp.
           4_1_40B]
 gi|300929593|ref|ZP_07145056.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300949740|ref|ZP_07163717.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300955454|ref|ZP_07167827.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|301024419|ref|ZP_07188104.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|312971028|ref|ZP_07785207.1| uncharacterized HTH-type transcriptional regulator ycaN
           [Escherichia coli 1827-70]
 gi|2495398|sp|P75836|YCAN_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator
           ycaN
 gi|1787128|gb|AAC73986.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4062476|dbj|BAA35635.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|157066103|gb|ABV05358.1| transcriptional regulator, LysR family [Escherichia coli HS]
 gi|169755626|gb|ACA78325.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|169888393|gb|ACB02100.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|194422344|gb|EDX38344.1| transcriptional regulator, LysR family [Escherichia coli 101-1]
 gi|238862261|gb|ACR64259.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|242376715|emb|CAQ31428.1| putative transcriptional regulator LYSR-type [Escherichia coli
           BL21(DE3)]
 gi|253325115|gb|ACT29717.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972915|gb|ACT38586.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253977129|gb|ACT42799.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|260449954|gb|ACX40376.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|299880391|gb|EFI88602.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|300317646|gb|EFJ67430.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300450854|gb|EFK14474.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300462481|gb|EFK25974.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|309701176|emb|CBJ00476.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           ETEC H10407]
 gi|310336789|gb|EFQ01956.1| uncharacterized HTH-type transcriptional regulator ycaN
           [Escherichia coli 1827-70]
 gi|315135548|dbj|BAJ42707.1| putative DNA-binding transcriptional regulator [Escherichia coli
           DH1]
 gi|323938006|gb|EGB34268.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1520]
 gi|323942816|gb|EGB38981.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|323962892|gb|EGB58466.1| LysR substrate binding domain-containing protein [Escherichia coli
           H489]
 gi|323973227|gb|EGB68419.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
 gi|332342343|gb|AEE55677.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 302

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMSLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSCIVEKDMISVAIGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + ++  ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELEAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ED  T        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|330809390|ref|YP_004353852.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377498|gb|AEA68848.1| Putative transcriptional regulator protein, LysR family
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 298

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 12/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L+ F  VA +G  + AA +L +S+S +SR++  LETE+G++L  R  RG  LTE 
Sbjct: 1   MDIEELQTFVEVADAGGISPAALRLGVSKSIVSRRLVRLETELGVQLLARSTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      + V  +++  +  +  +     G+LR+A  +  G       L E    +P +
Sbjct: 61  GATFRDYAARVCAEIDIAKETILPAGA-LRGRLRVAVPLSFGPTHFAPVLAEMARRHPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQ    ++ +D+  +  DCAIR+   +Q S+LI R++  I+    A+P Y+K    P +
Sbjct: 120 HIQTCYSDRFVDLITEGYDCAIRVGY-LQDSNLIARRIGPIYGKLLASPDYIKAHGSPET 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +E+  H  +       + M+        D+ I        + ++ ++++     G GIA
Sbjct: 179 PEEIVAHQALMQSTEAWQFMDR-------DKIITVRPQGRFKADNGIALVAAATAGLGIA 231

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD +  ++     LV IM     P    Y   P       K++     +  
Sbjct: 232 YLPDCLTFEHVASGALVPIMTRHPPPPAGAYVIRPSGQHPARKIRVLTELLIE 284


>gi|163801909|ref|ZP_02195806.1| AphB/LysR family protein [Vibrio sp. AND4]
 gi|159174417|gb|EDP59221.1| AphB/LysR family protein [Vibrio sp. AND4]
          Length = 291

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 138/293 (47%), Gaps = 9/293 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T  + +  +  ++I+R+I  LE  V ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +   S +  +L +T  E+ +     SGK++I+   +L + ++      F+  YPDI
Sbjct: 61  GERFYHECSPLLQRLTSTAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNAFMKQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L  ++    +     D   R+  P + SSLI RK+  +     A+P YL     P  
Sbjct: 121 NIELKTESNADQLDPTEWDVIFRVG-PQRDSSLIARKIGEVKDILVASPEYLIANPAPNH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H+L+    LI      +  + +    +        Q N+   +   C  G GI 
Sbjct: 180 AEELSNHSLLKGSPLI-----KWTLINSKGESVVNVERGRFQANALNVVRSTCSEGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L+PD ++K   +N +LVRI+ D       +Y  Y        K++ F +F+  
Sbjct: 235 LMPDVMIKEYIENGDLVRILSDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIA 287


>gi|152986165|ref|YP_001348791.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961323|gb|ABR83348.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 327

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 141/299 (47%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D+L+ F  V  SGS + AAE + L+ S++SR +S LE ++G  L  R  R + LT
Sbjct: 33  MKANSDELQSFVSVVDSGSISAAAEHMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 92

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++  ++E  +  L      P+G+LRI        + +  ++ EF  LYP
Sbjct: 93  EEGRYFLEQARQILQRMEELEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 152

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ++L  ++  ID+     D AIR+   +  S+L  R L    +H  A+P YL     P
Sbjct: 153 NIQLELNTNDLIIDLLEQRTDVAIRIGA-LSDSTLHARPLGASRLHILASPEYLARQGTP 211

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             ++ L +H L+ F    P+ +  +  +    DR   +P I     +S  ++ Q  +   
Sbjct: 212 RDVEALAEHTLLGFTQ--PEHLNRWPVVHVDGDRLDIQPDICA---SSGETLRQLALSHQ 266

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIA L  ++   +     LV +  + ++     ++  Y    +   +++ F +FI  + 
Sbjct: 267 GIACLASFMTDRDILEGRLVPLFAEQMSEYRQPIHAVYYRNSQLALRIQCFLDFIQQRL 325


>gi|115358811|ref|YP_775949.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284099|gb|ABI89615.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 301

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 133/292 (45%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +  +S  I  LE +VG+ L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMTSFTRAAESLGIQKGRVSMVIRKLERDVGVALLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++  +++  Q     +  +  G+LR+    +L ++++   L + +  +P+++
Sbjct: 63  RAFYSRARDLLAEVQELQSMFSGNGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  PI   +LI R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRLG-PITDDTLIARPLGKLRMTNAASPGYLARYGIPHTL 181

Query: 184 QELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L    H ++ +   +      + +    D     P  S +QVNS  +     + G G+
Sbjct: 182 DDLRTQGHRMVHYTLTLGARHPGWEY-PNGDGYASLPLPSAMQVNSVQTYHAAGLAGIGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                  +    ++  LV ++ D+                 + +++AF ++I
Sbjct: 241 IQAGYSALAHHIESGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFMDWI 292


>gi|330000231|ref|ZP_08303659.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328538054|gb|EGF64224.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 302

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +AR  SF+ AA +L +S S++S  + GLET +G++L  R  + +T T  G
Sbjct: 7   DVADLIYFMAIARHRSFSRAAIELGVSASALSHALKGLETRLGVRLLNRTTKSVTPTAAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +   + +  +E     L      P+G++RI   ++    LL   +  F+  YPDI+
Sbjct: 67  EELVQSVLQPFDTIEGALESLNRYRNTPTGRIRINAAVEAANLLLAPVMPAFMDRYPDIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I ++  N+ +D++    D  IR    +    + +R    I     A+P YL+    P   
Sbjct: 127 IDIVASNRMVDVTDAGFDAGIRYGGTVPEDMVARRLSADIRWVIAASPDYLERYGTPEHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I+      +    + W    D    +  +   + VN   + +   + G+G+ 
Sbjct: 187 DDLLHHRCISNRLGDDRV---YRWELARDGETYQMTVPGSVTVNHAETGLVAVLGGAGLM 243

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             P+ +V     +  L  ++ +        +  Y    +    L+    FI  +AR
Sbjct: 244 YFPEPLVAPYVKDGRLRLVLTEWSPLEEGFHIYYSSRRQLPTGLRLLIEFI-QEAR 298


>gi|90412286|ref|ZP_01220291.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90326777|gb|EAS43170.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 307

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 124/304 (40%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A   L LS ++++ ++  LE   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMAMFVSIVKHQGLAAAGRDLGLSPATMTARLQALEERYGVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+   +   +  +Q    +  G L+I    D+G+  +   L EF   YPD
Sbjct: 61  SGELYHKACIEILDNVSEAENLIQNGVKEVKGSLKIVAPKDIGKQYILPILSEFCKQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L LD+   +I+    D  IR  + +  SSLI R+L        A+P YL     PL
Sbjct: 121 VVPYLYLDDHISNIAESGMDIVIRYGE-LADSSLISRRLSPSRRVLCASPEYLSKHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             Q+L  H+ +    ++    E   W     D+      +     +    I  + + G G
Sbjct: 180 KPQDLVNHDCLA---MLRSNEELKTWHFQEQDKKNAITVVPKRFSDDGEVIRYWALDGVG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+ +     LV ++   +          S  +   Y        +++ F +F
Sbjct: 237 IALKSVLDVQADINNLRLVTVLNGYMKNFNTSMSVSSADLNVVYISKKYQPKRIRLFLDF 296

Query: 290 IFLK 293
           +F +
Sbjct: 297 LFER 300


>gi|293449398|ref|ZP_06663819.1| HTH-type transcriptional activator ttdR [Escherichia coli B088]
 gi|291322488|gb|EFE61917.1| HTH-type transcriptional activator ttdR [Escherichia coli B088]
          Length = 300

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 135/289 (46%), Gaps = 9/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G + +
Sbjct: 1   MQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+   
Sbjct: 61  EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVHFE 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QEL 
Sbjct: 121 LFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L  +
Sbjct: 180 RHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 236

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 237 WDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 284


>gi|153829248|ref|ZP_01981915.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148875286|gb|EDL73421.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 315

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  
Sbjct: 8   QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +   Q E+++   +  G +R+  +   G   +   L++    YP++ +++
Sbjct: 68  YAQCRELLTIVTNAQSEMEDQRDEVVGLIRLGLSQSFGTLHVLPALEQLRQQYPELNVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++        A+P YL     P     L
Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASPDYLLRYGSPTEPMAL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + +        +   W  + D      +++    V+   ++    V G GIA L 
Sbjct: 187 MEHNCLIYRS---WERDYTRWSFSRDGHNQTIKVAGNYSVDLAEALRDAAVAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            Y+++D      L++++ +         Y  YP       K  A   FI  + 
Sbjct: 244 TYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRL 296


>gi|167035646|ref|YP_001670877.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862134|gb|ABZ00542.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 313

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 133/296 (44%), Gaps = 9/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L+VF  V   GS + AA+Q+  + S++SR +S LE ++G  L  R  R + LTE+G  
Sbjct: 21  EELQVFVAVIDCGSISAAADQMGQTPSAVSRTLSRLEGKLGTTLVNRTTRRMDLTEEGRF 80

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               +  +  +++  +  L  +   PSG+LRI        + +   + EF   YP I+++
Sbjct: 81  FLERSRLILEQMDEMEERLSMNRQTPSGRLRINAAAPFMLHAILPWIGEFRRQYPGIELE 140

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  D+  ID+     D AIR+ + +  SSL  R L    +   A+P YL+    P  +++
Sbjct: 141 LNTDDLIIDLLEQSTDVAIRIGE-LADSSLHARNLGCSPVQVLASPAYLEQHGTPQRVED 199

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+ F              A  DR    P    L  +S  ++ Q  + G GI  L 
Sbjct: 200 LANHCLLGFSQPESLNHWPLRH-AQGDRFSIRP---ALLASSGETLRQLALAGEGIVSLS 255

Query: 246 DYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            ++  ++     L  ++ +        ++  Y    +   +++ F +FI  K   +
Sbjct: 256 HFMTHEDIRTGRLQVLLGEANNGYRQPIHAVYYRNTQLALRIQCFLDFIQRKLAMY 311


>gi|254254414|ref|ZP_04947731.1| Helix-turn-helix protein [Burkholderia dolosa AUO158]
 gi|124899059|gb|EAY70902.1| Helix-turn-helix protein [Burkholderia dolosa AUO158]
          Length = 320

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 132/293 (45%), Gaps = 5/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AA++L +++S++ + I+ LET +G +L  R  R  +LT
Sbjct: 20  MNDRLDGVTTFVQVVESGSFALAAQRLGMTRSAVGKAIARLETRLGARLLQRTTRSQSLT 79

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +L+  + +L     +P GKLR++  +  G + +   + +    YP
Sbjct: 80  DDGQAYYDRCVRALAELDAAEADLDCGRNEPRGKLRLSVPLAFGHHCVTPIVLDLARTYP 139

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 140 HLRIDVSITDRFVDLIDEGIDLAVRIGTLADSTSLAVRRLGTQYGSLGAAPSYLARYGVP 199

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++  L  H  I +        + ++ LA     +       L  +   +I    V G G
Sbjct: 200 KTLDALKDHRTIAYSR--SGVPQPWDLLAPDGSTVRIDMQHQLSFDDVQAIAAAAVSGFG 257

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +++  +     L  +++        ++  +P+      K +   + +
Sbjct: 258 IAWLPSWLLAHHAKRGELAVVLDRCFVCEGDIHAVWPKTRYLPRKTRCVIDAL 310


>gi|91223043|ref|ZP_01258309.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91191856|gb|EAS78119.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 318

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 124/298 (41%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F      GSF  AA+      S++S+ I  LE+++GI+LF R  R   LTE
Sbjct: 1   MDKIRSLRFFIATLDGGSFAAAAKVYGTDPSTVSKAIHRLESDLGIQLFQRSTRQSRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V  +L   +  L+  +   SG+L+I   +  G+  ++  LKEF   YP+
Sbjct: 61  AGRRYANTARFVLEELAACEDSLKSHNDALSGQLKINVPVSYGRLYIRPLLKEFCRRYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I +  D+  +DI     D +IR    +  S LI R+L  I     A+  YL     P 
Sbjct: 121 ITIDIHYDDAYVDIIEQGIDVSIR-SGVVHDSQLIVRQLSPIDFIICASQDYLARHGVPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                + H+ + F       +              +P  + + VN   S+ + C  G G+
Sbjct: 180 GSDVFNDHSWVRFRFKQTGKLLPIRMPEPDGASEYDPERNYI-VNDGESMAELCAEGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +P +I +D      LV I   +      VY  Y        +++ F +FI    +D
Sbjct: 239 TQIPHFIARDWLKAGRLVPIFPSMRQAGNGVYLLYANREYVPARVRVFIDFITQAIQD 296


>gi|308188122|ref|YP_003932253.1| hypothetical protein Pvag_2644 [Pantoea vagans C9-1]
 gi|308058632|gb|ADO10804.1| Uncharacterized HTH-type transcriptional regulator yafC [Pantoea
           vagans C9-1]
          Length = 299

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 137/297 (46%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++LR +  V  SGS T AA QL  + S ISR +S LE+++   L +R  R L LT
Sbjct: 1   MKITLEELRAWVAVVDSGSITAAATQLAQTSSGISRALSRLESKLQTTLLHRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   +E  + ++      PSG+LR+        +++   + +F   YP
Sbjct: 61  EEGQVFLEHARQILASVEQAEEQIALRREMPSGRLRVNAATPFMLHVIVPLVDDFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  D+  ID+     D AIR+ + ++ S+L  R L +  +   A+P YL     P
Sbjct: 121 LIQLELNTDDIMIDLLEQQTDIAIRIGE-LRDSTLRARLLGSSAIRLMASPAYLAKAGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L +H  I F       +    W    D    +P    L  +S  +I Q  + G G
Sbjct: 180 QSVADLAQHQTIGFSYPDTLNVWPI-WQPDGDFMRVKP---TLAASSGETIRQLALAGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA L D++ +++     LV ++  +       V+  Y      + ++  F +F+  +
Sbjct: 236 IARLSDFVSREDCAAGRLVPVLTAETRDLRLPVHAVYYRNTTLSSRIGCFLDFLRTE 292


>gi|213157584|ref|YP_002319629.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213056744|gb|ACJ41646.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
          Length = 300

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 137/297 (46%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYNLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL   P
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKNNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QLI+ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL     
Sbjct: 121 EIRLQLIVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGN 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
             S  EL  H +++  +   + ++    L   D  + + ++S  +   +   + Q     
Sbjct: 181 IKSPDELSDHRILSLSE---EHLDQQFILHGPDNQLKKVKVSPTIMGTNIYMLAQLASQN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIALLPD   +D   +  LV+I+ D        +  YP        ++ F +++  
Sbjct: 238 CGIALLPDTAAEDFVKSGQLVQILPDWKAAHGIFHAVYPSRRGLLPAVRVFIDYLVE 294


>gi|186471815|ref|YP_001863133.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184198124|gb|ACC76087.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 295

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 142/295 (48%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ + V+  V  +GS + AA  + +S +S+SR I+ LE + G +L  R  R L +T+
Sbjct: 1   MDRFEAMSVYVRVVEAGSLSAAARAIPMSLTSVSRHIAALEDQFGAQLLRRTTRNLAMTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L+     +  +++     L     + SG+LRIA    LG+ L+   L  FL ++PD
Sbjct: 61  EGRILYDRAKSILGEVDELGSALSAGRGRLSGRLRIAAPNLLGRLLIAPLLPRFLAMHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+L ++ ++I  +    A+R+ + +  SSL+ RKL  I M   AAP YL     P 
Sbjct: 121 VAVDLMLVDRVVNIVEEGLHLAVRVGR-LPDSSLVARKLDDIEMMVCAAPSYLARRGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H+ + F D        F   AT  R         L +NS  +++   + G+GI
Sbjct: 180 RPDDLRRHDCLVFSDAAGPVDWRFQSGATRTR---VSVTGRLWMNSLDALVSAALEGAGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              P + V    D   L  +++    P+  V+  +      + K++ F +++  +
Sbjct: 237 VRAPAWQVAAHIDAGRLQPVLDKFAPPATPVHVLFERTKLASPKIRTFVDYLVDQ 291


>gi|115358280|ref|YP_775418.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283568|gb|ABI89084.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 296

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 121/286 (42%), Gaps = 12/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F      GSF+ A   L L Q ++SR ++ LE  +  +L +R  R L LT +G + +
Sbjct: 1   MTCFARAVEMGSFSAAGRDLGLGQPNVSRYVAALEDHLQTRLLHRSTRKLALTPEGERYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E ++   +  +V PSG LR+A    L    +  ++  FL  YP + + + 
Sbjct: 61  ADIRRILDAVEESESSFRN-NVDPSGLLRVACPTSLAHAFVLPHVPAFLERYPRLTLDIQ 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  +  + AIR+   ++ S+L  R++        A+  YL     P +  +L 
Sbjct: 120 ISDRYVNLVDEGIELAIRIGH-LEDSALRARRIGMFERVVVASKEYLAKRGVPHTPDDLR 178

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +  L       F       R    P    L+VNS  ++      G G+   P +
Sbjct: 179 DHDCVIYTLLSSGATWRF-------RDTDIPVSGRLRVNSPDAVRAAVNAGLGVGHGPAW 231

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +   ++  L  I+  +  P+  V   Y        +   F  FI
Sbjct: 232 LFEEGLESGRLQLILSGLADPAVPVQIVYVANRLLPTRAIVFIEFI 277


>gi|332086718|gb|EGI91858.1| HTH-type transcriptional activator ttdR [Shigella boydii 5216-82]
          Length = 310

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLSRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWVLEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|39937805|ref|NP_950081.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39651665|emb|CAE30187.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           CGA009]
          Length = 304

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 133/296 (44%), Gaps = 8/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   +++R F  +A  GS +  A  L++ QS+++RQ+  LE  VG  L  R  R +TLTE
Sbjct: 5   AVTIERIRTFVRIAERGSLSAVARDLNVGQSTVTRQLQELEAAVGAPLLSRTTRRVTLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS+ +    ++   LE    E   +S  P+G +RI+ T   G       +  F   YPD
Sbjct: 65  EGSRYYARCVQILRLLEQAGDEALGASGTPAGTIRISCTASFGVLHASRLIFAFQDRYPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I   L ++ +D+  +  D AIRL  P+  SSL  R L   H    A+P YL    +P 
Sbjct: 125 IGIDFGLTDQRVDLVREGVDLAIRLA-PLTDSSLKLRTLGHSHRLLVASPDYLAAHGKPT 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
           S Q+L  H  +   ++      D   L   D+ I   P    L+V+  L+  +  + G G
Sbjct: 184 SPQDLSNHQGVRMVNV---AGSDLLVLQGPDQEIHRVPFGGRLRVDHGLAAREAMIAGRG 240

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA    ++V D      L  ++ +   P   +            +++   +F+  +
Sbjct: 241 IAATHRWLVDDLLAAGRLEVLLPEYRLPPVPLNLLIVPERAGIARVRLLIDFLAEQ 296


>gi|330821914|ref|YP_004350776.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327373909|gb|AEA65264.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 307

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 121/293 (41%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +R+F   A  GS + A  +L LS ++ S ++  LE  +  +LF R  R L LT++G
Sbjct: 3   NLGDIRLFVEAANLGSLSAAGRKLGLSPAAASARLIKLEGALSTQLFERSTRKLRLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        L+  +  LQ       G LR++ T D G+ +L+  L EF  L+P + 
Sbjct: 63  RLYLAHCQHALQTLDDARSALQLGRASIGGALRVSATSDFGRVVLRRWLDEFNDLHPQVA 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+L +   ++  D  D AIR   P   S ++ ++L        A+P YL     P   
Sbjct: 123 LSLVLADSLSNLLHDDIDLAIRFGVP-ADSGMVAKRLADNRRVLCASPAYLAAHGAPRHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H  +          +           +  P     Q N      ++ + G G+ +
Sbjct: 182 EELGEHRFVLLSSSAGVANQWKFSREGETVQVSAPLARARQTNDGALAREWAIEGRGVVM 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + V  +     LV ++ +   P   V+  +  +     +++A  +F+  +
Sbjct: 242 KSIWDVGADLRAGRLVMLLPEWRCPEMPVHALFQRSQYLAPRVRALLDFLQER 294


>gi|229521869|ref|ZP_04411286.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229340794|gb|EEO05799.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 315

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  
Sbjct: 8   QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +   Q E+++   + +G +R+  +   G   +   L++    YP++ +++
Sbjct: 68  YSQCRELLTIVTNAQSEMEDQRDEVAGLIRLGLSQSFGTLHVLPALEQLRQQYPELNVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++        A+P YL     P     L
Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASPDYLLRYGSPTEPMAL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + +        +   W  + D      +++    V+   ++    V G GIA L 
Sbjct: 187 MEHNCLIYRS---WERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            Y+++D      L++++ +         Y  YP       K  A   FI  + 
Sbjct: 244 TYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRL 296


>gi|186470421|ref|YP_001861739.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196730|gb|ACC74693.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 309

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 132/294 (44%), Gaps = 13/294 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA + SF  AA QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVAETSSFAEAARQLGVTSSVVTNRIQQLEKFVDAPLFHRSTRHVRLSEVGEAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +EV  ++     +++E    P+G+LRI             +L EF   YP IQ+ +I
Sbjct: 67  RECAEVVGRVNELTDQMRELRATPTGRLRIQMLPGFALGHFGASLAEFNRRYPGIQLDVI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D   +  D A ++  PI S SLI+R+L  +     AAP YL+    P   ++L 
Sbjct: 127 VNDRVVDPIEEGFDVAFQIFPPI-SESLIERRLFPVRRLFCAAPSYLREYGTPQHPRDLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
           +H    +     +      W  T    + E  +  + + NS   +  Y + G G+  LP 
Sbjct: 186 QHTTALYSGYPSRN----RWTMTRGDEVVEMELPGMIRSNSVHLLRDYALTGGGVVCLPT 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            +      + +LV I+ D           YP   +   K+KA   F+     DW
Sbjct: 242 LVASAALLDGSLVPILTDYALSPLNFAAVYPATQRQALKVKALVEFLA----DW 291


>gi|83716945|ref|YP_439590.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650770|gb|ABC34834.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 430

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 124/293 (42%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 109 MDM-LDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 167

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    P
Sbjct: 168 ESGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNP 227

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 228 DVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTP 287

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L KH  +          E        +  +     +  Q N   ++      G G
Sbjct: 288 TTPEDLAKHVCLRLDTPASPGGEWRLERDDGEETVYALPPAPFQANVPDALSVAVRAGRG 347

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F + +
Sbjct: 348 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHL 400


>gi|304410463|ref|ZP_07392081.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307304555|ref|ZP_07584305.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304350947|gb|EFM15347.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306911957|gb|EFN42381.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 299

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 135/298 (45%), Gaps = 11/298 (3%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M  +   D +R+F+VVA+ GSF  AA+ L +  S++SR+I+ LE  +G++L +R A  + 
Sbjct: 1   MKLNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVN 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT  G +       ++ +L     EL     +  GKLRI+  I+     L  +L  F   
Sbjct: 61  LTATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRH 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP+I I L L N +ID+S +  D A R+ +P +    I R L TI     A+        
Sbjct: 121 YPNIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISFVLCASTS-ATQWH 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
              SI+ L++H +I      P          T      EPR +  L V+      Q  V 
Sbjct: 179 ALQSIEALEQHPVII---AKPVKTWRLQHNITGQNFEFEPRGNIKLAVDDMAIASQAVVA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI LLP  +  +   +  LV+I+ +      T Y  Y +      +++   +F+  
Sbjct: 236 GLGIGLLPISMASEQIQSGKLVQILPEWQGIPRTAYLMYRDRDNLPLRVRLLIDFMLA 293


>gi|262164251|ref|ZP_06031989.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|262026631|gb|EEY45298.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 302

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 121/297 (40%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +  R F  V   GSFT AA  L L+Q  IS+ +S LE +VG KL +R  R + +T
Sbjct: 1   MELDLNAARCFVKVVELGSFTQAANLLGLTQPGISKAVSRLEAQVGAKLIHRSTRQVRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G    +    + +  E    EL+ S   P G L+++    L  +L+   +K     YP
Sbjct: 61  EDGQLFMKRIQPLIYGFEEAHNELKFSKTTPVGCLKLSAPSALSHSLMMPIVKLLTERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++I+L L ++   +  +  D  +R    I    L+   L        A+P YL     P
Sbjct: 121 DLRIELSLTDQKAHVFDEGYDAVLRFGS-IDDERLVAFALQDAEWVTVASPEYLAKQGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLG 238
               EL   N +              W   +D    E R  +  +  +    ++   + G
Sbjct: 180 HHPDELRNFNCLHVKP--RGQTNTLPWRFRIDGKGIEYRQLVGNVCFDHGDPLIDAALQG 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G   +   ++ D   N  L  ++ D    + + +  YP + + + KL   R  + L
Sbjct: 238 LGAVQVLRCVIADKLANGELKEVLTDFRPQAHSFHLLYPPSRQRSAKLTVLREALIL 294


>gi|209549901|ref|YP_002281818.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535657|gb|ACI55592.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 298

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 131/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  VA   SFT AA +L ++QS++S  +  LE  +G++L  R  R +  TE G
Sbjct: 5   NFNELLLFLAVAEERSFTRAAAKLGVAQSTLSYAVKELEARMGLRLLTRTTRSVATTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    ++E     L     KP+G ++I  +    ++++   L   L  YPDI+
Sbjct: 65  ERLRQSLAPRISEIEADIAALMAYRDKPAGTVKITLSNHAMESVVWPKLAPVLGEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +DN   +I  D  D  +RL + ++   +  R      + A A+P Y +    P + 
Sbjct: 125 LELSVDNSFRNIVEDGFDAGVRLGESLEKDMVAVRIGPDWRLVAVASPDYFETRAVPTTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL  HN I     + +    + W    +      R+      N+   ++   + G GIA
Sbjct: 185 QELMHHNCI--NRRLDRVGGLYAWEFEKNNEEVRVRVEGQFTFNTDREMVHAALQGYGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+  V+    +  L   +ED        Y  YP   +N        + +  +
Sbjct: 243 FVPESYVETHIADGRLQLFLEDWTPKFAGYYLYYPSRRQNLPAFSVIVDALRER 296


>gi|153001675|ref|YP_001367356.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151366293|gb|ABS09293.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 314

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 121/308 (39%), Gaps = 19/308 (6%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT 
Sbjct: 1   MDRLEAAKVFVTIVERGSMVSAANALDMSRSMVTRYLSEMEEWSGARLLHRSTRSLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +             S   P G LRI+ +  L   +L   + ++L  YP 
Sbjct: 61  AGEQVLDYCHRLLELANEVPAVSHASVAIPRGLLRISCSQFLAHQILAPVVNQYLASYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             + + + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      L
Sbjct: 121 ASVNIHVSSQTVDLVAERIDLAIRITNEL-DPNLIARRLGECESVVCAAPSYLAARAAVL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--------------DRPIGEPRISCLQVNS 227
             ++L +HN +T+          +                     +    P       N 
Sbjct: 180 HPEDLTQHNCLTYSYFGDVMWRFYQADVAAKQVQALNSDPKLNQGQAFNVPVNGNFSAND 239

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y         L+
Sbjct: 240 SMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVYQSRKHMQPALR 299

Query: 285 AFRNFIFL 292
              + +  
Sbjct: 300 VMMDMLVA 307


>gi|254713072|ref|ZP_05174883.1| LysR family transcriptional regulator [Brucella ceti M644/93/1]
 gi|254716575|ref|ZP_05178386.1| LysR family transcriptional regulator [Brucella ceti M13/05/1]
 gi|261218372|ref|ZP_05932653.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320779|ref|ZP_05959976.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|260923461|gb|EEX90029.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293469|gb|EEX96965.1| transcriptional regulator [Brucella ceti M644/93/1]
          Length = 304

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 133/300 (44%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 60  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 120 DIEVRLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S + L  D+H+ +      P   E +  L T +             +    + Q+ + G
Sbjct: 179 QSPEALLSDRHHCLLL--RFPGSKEYYWLLQTPEGLRKFEVTGPYDADDGDVLTQWALGG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P + VK+   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 237 RGIINKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 296


>gi|170695012|ref|ZP_02886161.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140110|gb|EDT08289.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 333

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 141/293 (48%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  + VF  +  + SF+ AA  L+L ++S S  I  LE  + ++L YR  R + LT
Sbjct: 1   MFNRFQAMVVFTRIVETNSFSRAAVSLNLPRASASNIIKSLEAHLRVRLLYRTTRRINLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G++ +    ++   LE T+  L   +    G LRI     +G+ ++   + EF  +YP
Sbjct: 61  AEGAQYYERCVQILSDLEETEYALTSGASGIHGTLRINLPPAIGRTVIVPRIHEFCSMYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +++   ++ +D+  +  DCAIR+   ++ SSLI R+   + M   A+P Y++    P
Sbjct: 121 QVDLRIGFSDRRVDLVQEGIDCAIRVGL-LEDSSLIARQFGHVEMLTSASPRYIQRHGCP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           L I +L +H  +    L+     + ++    +    E RI   + V+   + ++  + G 
Sbjct: 180 LEIDDLPRHFAVH---LLSGSGRNLDFNFVRNGHAAEIRIPGTVAVSDVDAYIRCGLDGM 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +P ++V+++     L+ ++         V   YP     + K++AF  +
Sbjct: 237 GLIQVPAFMVREHLRSGELLEVICHHRPQPIPVSAIYPANRHLSSKVRAFVEW 289


>gi|160900024|ref|YP_001565606.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365608|gb|ABX37221.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 309

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 130/295 (44%), Gaps = 12/295 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +  F  V   G F  A   L + +S +SR+++ LE  +G++L  R  R L+LT+ 
Sbjct: 2   MDLNDMLYFAEVVERGGFASAGRALGIPKSRLSRRVAELEARLGVRLLQRTTRKLSLTQV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +          + E   +P G +R++  + L Q +L   + +FL   P +
Sbjct: 62  GEAYLRHCQAMRDAALAAADTVAEVQTEPRGTIRVSCPVTLAQTVLGELMPQFLQRCPLV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +++ + N+ +++  +  D A+R+R  ++ S S++ ++L        A+P  L+    P 
Sbjct: 122 HVEMQVTNRPVNLVEEGIDVALRVRPSLEDSGSMVVKRLDVARQILVASPELLERQGTPR 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLG 238
           ++ +L          +    ++  + L  V     E R+       V+  L++    + G
Sbjct: 182 ALADLQH-----LDSMSMSAVDGQSSLLLVGPEGREQRLQLQPRYVVDDLLTLKFAALAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           SG+  LPDY+  +      LV ++     P   V+  +P        ++ F +F+
Sbjct: 237 SGMCWLPDYMCHEELAEGRLVHLLPGWEPPQGIVHAVFPSRRGLAPAVRHFLDFL 291


>gi|292486778|ref|YP_003529648.1| HTH-type transcriptional regulator YhjC [Erwinia amylovora
           CFBP1430]
 gi|292900822|ref|YP_003540191.1| LysR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291200670|emb|CBJ47802.1| LysR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291552195|emb|CBA19232.1| Uncharacterized HTH-type transcriptional regulator yhjC [Erwinia
           amylovora CFBP1430]
          Length = 305

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   GSFT AA+Q+ LS S++S+ ++ LE E+ +KL  R  R L LTE G 
Sbjct: 4   LKGMSVFTKVVELGSFTAAAKQMQLSVSAVSQIVARLENELQVKLLNRSTRNLGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +  + +    +L   +  P G LRI ++  + QNLL    KE L  YP + +
Sbjct: 64  IYFQGCRRMMAEAQQVHEQLWAFNNTPVGTLRIGSSSTMSQNLLAPMAKEILQEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D AIR+   +  SSL  ++L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDLAIRVGA-LPDSSLFAKRLGSMPMVVCAAKAYLLQFGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++  H+ + +     +   DF+ ++     I          N   +++++   G+GIA +
Sbjct: 183 DISNHSWLEYSV---RPDNDFDLISPEGIAIRLSPQGRFATNDAQTLIRWLKAGTGIAYV 239

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   + D  N   +        +    VY  Y +  K   +++   N++
Sbjct: 240 PLMWIIDEINAGEVEILFAHYQSVPRPVYALYSQKDKLPLRVQVCINYL 288


>gi|283856505|ref|YP_163309.2| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|283775509|gb|AAV90198.2| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 304

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 131/289 (45%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+ F +VA+  SFT AA +L +SQS++S  +  LE  + + L  R  R +T T  G
Sbjct: 7   NLNDLQSFLIVAQEKSFTKAAAKLGVSQSALSHTVRQLEARLNLTLLIRTTRSVTPTSAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +  +  + ++E     + E   +P+G +RI +T D    +++  +K FL  YP ++
Sbjct: 67  EYLIQNMAPHFDQIEKQLASIGELRNQPTGTIRITSTDDALAYVIRPKIKGFLQKYPGVK 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+ D K +DI  +  D AIRL + +            I      +P Y +N   P + 
Sbjct: 127 IELVSDLKLVDIFTEKFDAAIRLGENVTKEMASVPLTPDIRFTVVGSPEYFQNKPIPETP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  IT    +P     + W      R I       L  NS   I   C+ G G+A
Sbjct: 187 QDLLNHQCITI--RLPTHGGIYAWEFEKAGRDIKIRVDGPLVFNSIFPIRNACLDGLGLA 244

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P+ + K   +   L+ ++ED        + C+P   +N      F  
Sbjct: 245 HMPEIMAKKYIEEGRLIPVLEDWCPYWSGYHLCFPHHYENIRPFSLFLE 293


>gi|330445680|ref|ZP_08309332.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489871|dbj|GAA03829.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 316

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V  S SF+ AA++L ++ S ISRQIS LE E+ ++L  R  R   LT  G + 
Sbjct: 12  DIAAFVTVVESDSFSAAAKKLGMTPSGISRQISRLEKELQVQLIKRSTRSQALTHAGQEA 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +    +         + +  G+L IA+     + +LQ  L  F+  +P I++++
Sbjct: 72  YQYGKNILQNAQDVVDLAANHTQEVEGQLTIASPKAFCRQVLQPLLLSFVEQHPKIKLKI 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +K ID      D   +L    Q+ +L+ + L T H+   A+P YL     P   ++L
Sbjct: 132 EVTDKPIDPIYHDVDVVFKLTNKPQA-NLVAKNLATNHLVLCASPQYLTQRGMPQHPKQL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ I  G+ I      F    T +  +         VN     ++  +   GIA+LP 
Sbjct: 191 VDHDCIYLGETIVDNQWRF---KTDNEQVTVTVNGRYIVNHTEMRLEAALNHFGIAVLPF 247

Query: 247 YIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ K   ++  L  ++   +        V+  Y   L    + +AF +FI  +
Sbjct: 248 FVAKKAIESGALTPVLPHWVLLDNYQGEVFMQYLPNLNMPYRQRAFIDFITEQ 300


>gi|311277796|ref|YP_003940027.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308746991|gb|ADO46743.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 308

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 129/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA+QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAAKQLQMSVSSISQTVSRLEDELQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L     E L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAKITAEMLKEYPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R++ ++ M   AA  YL+    P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRIGSMPMVVCAAKSYLQQAGTPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +                 N  +++ ++   G+GIA +
Sbjct: 183 DLASHSWLEYSV---RPYNEFELIGPEGIATRLTPQGRFVTNDPMTLSRWLNAGAGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V D      L  ++    +    VY  Y E  K   K++   + +
Sbjct: 240 PLMWVIDEINRGELEILLSRYQSDPRPVYAVYTEKDKLPLKVQVCLDAL 288


>gi|182677574|ref|YP_001831720.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633457|gb|ACB94231.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 304

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 125/295 (42%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  +   GSF  AAE L L  S+ +  +  LET +G++L  R  R +  T 
Sbjct: 1   MDRIDAMRVFVRIVERGSFVRAAEDLGLPPSTATDAVKQLETRLGVRLLQRTTRQVRTTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    + + +E  +     +   P G LR+       +  +   L  F   YPD
Sbjct: 61  DGEAYYRRCLAILNDIEEAESAFSGA--LPRGLLRVDVQGTQARRFIVPALPRFFADYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   ++ +D+  +  DCA+R  +P + S +I R++  +     A+ +Y+     P 
Sbjct: 119 LELFMSEGDRFVDLVGEGIDCALRTGEP-KESDIIARRIAMLPEVTVASANYIGRFGHPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               LD H +I F       +    ++    R       S L VN   +       G G+
Sbjct: 178 RWDALDGHRMIGFRSSATGGVLPLEFMVNGTRKT-VTLPSTLAVNGADTYKAAAQQGLGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +P Y V+ +     L+  + +       VY  YP + + + +++ F  ++  +
Sbjct: 237 IQVPRYSVEQDLAEGRLLECLPETPPSPTPVYVLYPRSRQLSLRVRVFIEWVAKE 291


>gi|254190856|ref|ZP_04897363.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157938531|gb|EDO94201.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 320

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E       P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHG-ATPQGRVRINSHVPFGKHHLMPLLPEFQHRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 126 DIVLSDSLVDPLDERSDIAIRSGA-LDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+HN I                   +     P    L +    SI +  V G G+A L
Sbjct: 185 DLDRHNCIGLSGNAKAWP-----FVAEEGQRLLPSAGNLLLGDNESIREAAVSGLGLARL 239

Query: 245 PDYIVK---DNPNLVRIMEDVIT-PSFTVYFCY--PEALKNTGKLKAFRNFIFLKAR 295
             + V    D   LV ++E         +   +  P       ++ A  +F+  + R
Sbjct: 240 ARFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSE-HLPMRVHALLDFLKERIR 295


>gi|82544636|ref|YP_408583.1| transcriptional regulator LYSR-type [Shigella boydii Sb227]
 gi|81246047|gb|ABB66755.1| putative transcriptional regulator LYSR-type [Shigella boydii
           Sb227]
 gi|320183877|gb|EFW58707.1| Putative LysR-like transcriptional regulator [Shigella flexneri CDC
           796-83]
 gi|332093679|gb|EGI98737.1| hypothetical protein SB359474_2533 [Shigella boydii 3594-74]
          Length = 302

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 126/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +      F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LT
Sbjct: 1   MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS L+      + +++    E+ +  + P+G L+I       +  L   L  F   YP
Sbjct: 61  EAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINDARVAARIFLMPLLVGFTREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D+  +DI     D  +RL   ++   +       + +   A P Y     +P
Sbjct: 121 DIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  + F        + F+W    +  I       + ++   + ++  ++G+G
Sbjct: 181 RHPHDLLNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELEAVLMGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L    +K   D   L  ++ D  T        YP     +  L+AF +++
Sbjct: 236 IGYLLYEQIKEYLDTGRLECVLGDWSTERPGFQIYYPNRQYMSCGLRAFLDYV 288


>gi|209809096|ref|YP_002264634.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
 gi|208010658|emb|CAQ81045.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
          Length = 293

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 143/295 (48%), Gaps = 13/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L+ F  +  +G+ +  +    +  SSISRQ++ LE ++G++L  R++R + LTE G 
Sbjct: 2   IKRLQYFNTIVETGNMSETSRIFDVQPSSISRQLAVLENDLGVRLINRNSRNIALTEAGH 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +  + ++   L+  +  + +    PSG L ++ T+  G+ ++   L +F   YPD+ +
Sbjct: 62  RFYSYSKQIILDLDEAKRVINDLQQVPSGMLNLSVTVGFGEAVIIPLLPKFKAAYPDVDL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +  + +D+  +  D  IR    +  SS+I  +L T      A+P YLK    PL+I 
Sbjct: 122 RVEITERIVDLIEENTDVVIRSGN-LTDSSMIATQLATNDFILCASPMYLKENGTPLAID 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  +  I +G          NW    ++       + ++VN+     Q  +   G+AL+
Sbjct: 181 DLVNYLCIKYGYAG-----WGNWFLKGEKLEKIEIENSIEVNTVNGQKQLVLNHGGLALI 235

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFL 292
           P + VK   +N +LV++M D     +     VY  +      + K++ F +F+  
Sbjct: 236 PHWAVKNELENGDLVQVMRDHHFCPYGKDTAVYAIFLRRELISPKIRVFLDFLKE 290


>gi|82776963|ref|YP_403312.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|81241111|gb|ABB61821.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
          Length = 314

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 14  LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 74  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 134 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 193 DLSALPCLLIKERDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 250

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 251 SWWDVSENIASGHLVQVLLEYYQPA-NVWAVYVSRLATSAKVRITVEFL 298


>gi|16262743|ref|NP_435536.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|14523371|gb|AAK64948.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 295

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 123/293 (41%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA   SFT AA +L  SQSS+S  I  LE  +G++L  R  R +  TE G
Sbjct: 5   ELGDLLAFLAVAEEESFTKAAARLGTSQSSLSLIIKRLEARLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  +  +E     L E   KP+G  RI         +L   L  FLL YPDI+
Sbjct: 65  EQLFSTLAPAFGTIEAQLSALSEFRDKPAGNFRITAGQHSIDTILWPKLSAFLLAYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ ++   DI  +  D  +RL   ++   +  R      M    AP  L++   P + 
Sbjct: 125 VELVAESALTDIVAERFDAGVRLGDQVEKDMIAVRIGPPARMIVVGAPSCLRDRPPPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL  H  I     +P     + W    D      R+   +  N    I++  + G G+ 
Sbjct: 185 QELTTHRCINL--RLPSYGGFYAWEFERDGHEVRVRVDGQVAFNGVPQIVKAALDGFGLT 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + + +V++   N  LV+I++D   P    +  YP     +         +  
Sbjct: 243 YVHEDVVREYLKNGRLVQILDDWTPPFPGYHLYYPSRRHPSPAFTLLVEALKE 295


>gi|188532825|ref|YP_001906622.1| LysR-family transcriptional activator [Erwinia tasmaniensis Et1/99]
 gi|188027867|emb|CAO95724.1| LysR-family transcriptional activator [Erwinia tasmaniensis Et1/99]
          Length = 292

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 17/289 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA +  L +SS+S++IS LE  +G++L  R  R L LT  G 
Sbjct: 5   LQDMALFALVAECGSFTAAAARAGLPKSSVSQRISQLEHALGLRLINRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + ++     PSG+LRI +   +G  LL     +F   +PD+ +
Sbjct: 65  RYLVHCQEMLQASERAGLVIERLRDNPSGRLRITSPAGIGATLLARVNTDFQQQFPDVTL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++  D+  D  D A+R  +P Q  SLI R++        A+P YL + +     +
Sbjct: 125 EVSISDEMCDLVQDGFDVALRTGRP-QDLSLIGRRIGYCQRLLVASPDYLADYQTLAHPR 183

Query: 185 ELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +L +H  I        L+ +  E + WL                 ++ +   +  +   G
Sbjct: 184 QLSEHRCIAHRAWNEWLLKRNEEYYRWLL----------PPTHMTDNLVYARECALSSGG 233

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I LLP ++  +   LV+++ +       ++  YP    N+  L  F +F
Sbjct: 234 ITLLPRFLSCE--KLVQVLPEWEVEGNELWLVYPSRKLNSPALSRFVDF 280


>gi|163797016|ref|ZP_02190972.1| regulatory protein, LysR:LysR, substrate-binding [alpha
           proteobacterium BAL199]
 gi|159177763|gb|EDP62314.1| regulatory protein, LysR:LysR, substrate-binding [alpha
           proteobacterium BAL199]
          Length = 301

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 132/293 (45%), Gaps = 6/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR F  VA  GS + AA  LH++ +++SR +  LE    ++LF R   G  LT  
Sbjct: 1   MNWDDLRYFLAVAGEGSLSGAARSLHVNPATVSRHVDALEERFAVRLFDRRQDGYGLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL   +  +  ++              +G + +  T  L    L  NL      +P I
Sbjct: 61  GEKLLARSRGIESEMFALGRAFDAEDRGLAGTVTVTATESLTVPFLIRNLPLLEQRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+ + + +++S   AD AIRL +P +   L  RK+  +    YA+P YL+    P +
Sbjct: 121 RLHLVNEYRMLNLSRREADVAIRLARP-EQGDLSIRKIGVMGFGLYASPAYLEAHGTPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H +I + D  P+ +    WL    R      +     N   + +     G GIA
Sbjct: 180 PGDLRDHRVIDWLDGFPENVT-VTWL----RRQIGDTLPIFSTNPASARLAAARGGVGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+P  + +    +VR++ D   P   ++      L    K++A  +FI+ +A+
Sbjct: 235 LVPCMVAEGVQGVVRLLPDEAIPGVDLWLLVHRDLARLAKVRAVLDFIYDRAQ 287


>gi|167839604|ref|ZP_02466288.1| transcriptional regulator [Burkholderia thailandensis MSMB43]
          Length = 322

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 123/293 (41%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    P
Sbjct: 60  ESGQRYFERAKSILAEIDHANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++  KH  +          E        D  +     +  Q N   ++      G G
Sbjct: 180 TTPEDFAKHVCLRLDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F + +
Sbjct: 240 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHL 292


>gi|307321677|ref|ZP_07601068.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306892706|gb|EFN23501.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 295

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 123/293 (41%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA   SFT AA +L  SQSS+S  I  LE  +G++L  R  R +  TE G
Sbjct: 5   ELGDLLAFLAVAEEESFTKAAARLGTSQSSLSLIIKRLEARLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  +  +E     L E   KP+G  RI         +L   L  FLL YPDI+
Sbjct: 65  EQLFSTLAPAFGTIEAQLSALSEFRDKPAGNFRITAGQHSIDTILWPKLSAFLLAYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ ++   DI  +  D  +RL   ++   +  R      M    AP  L++   P + 
Sbjct: 125 VELVAESALTDIVAERFDAGVRLGDQVEKDMIAVRIGPPARMIVVGAPSCLRDRPRPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL  H  I     +P     + W    D      R+   +  N    I++  + G G+ 
Sbjct: 185 QELTTHRCINL--RLPSYGGFYAWEFERDGHEVRVRVDGQVAFNGVPQIVKAALDGFGLT 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + + +V++   N  LV++++D   P    +  YP     +         +  
Sbjct: 243 YVHEDVVREYLKNGRLVQVLDDWTPPFPGYHLYYPSRRHPSPAFTLLVEALKE 295


>gi|237731835|ref|ZP_04562316.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226907374|gb|EEH93292.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 313

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 135/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + IS++++ LE  + + L +R  R +T+TE+G 
Sbjct: 15  LNDLRVFMLVARRAGFAAVAEELGVSPAFISKRVALLEQTLNVVLLHRTTRRVTITEEGE 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   ++    EL ++   P G LRI ++   G+ ++   L      YP +++
Sbjct: 75  RIYEWAQRILQDVDQMMDELSDARQIPQGMLRIISSFGFGRRVVAPALSALAKEYPQLEL 134

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 135 RFDVEDRLVDMVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFVARHGVPKQLN 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           +   +          L  N    + Q+C+ G GIAL 
Sbjct: 194 DLSTFPCLVIKERDHPFGIW--QMRNKEGAHSIKVTGPLSSNHGEVVHQWCLDGQGIALR 251

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V D   + +LV I+ +   P+  ++  Y   L  + K++    ++
Sbjct: 252 SWWDVCDNIASGHLVHILPEYYQPA-NIWAVYVSRLATSAKIRITVEYL 299


>gi|77458675|ref|YP_348181.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382678|gb|ABA74191.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 305

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 131/292 (44%), Gaps = 12/292 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L++F    R G ++ AA +L +S SS++RQ++GLE E+G  L  R  R  ++T  G   
Sbjct: 6   ALKMFVETVRCGGYSSAARKLGISTSSVTRQVAGLENELGASLLNRTTRNTSVTVAGQTY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   ++     + +      G+LRI+  ++ G+ ++   L E L  +P ++I +
Sbjct: 66  FEKAVAILDAIDEADAVVADRGSDAQGRLRISVPVEFGRQIIAPQLGELLDRHPGLEISV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  D+  +  D ++RL   + S  ++ +++        A+P YL     P   ++L
Sbjct: 126 SLSDQVSDLLSEQIDVSVRLGSSVVSDDIVSKRVGGFQRWIVASPDYLSGHAVPAHPRDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +H  + F           +W    D    +  +   LQ N+   + +  V G G+ALL 
Sbjct: 186 LEHQCLRFD----YAGSHQHWTFQGDEETIQLNVHGRLQSNNADILREAAVAGRGVALLA 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFI 290
           D++V+ +     L R++E            +   Y    + + ++  F +F+
Sbjct: 242 DWLVRADVEAGRLTRLLEGYEVNPGNASCCINALYLPNHRGSSRINVFIDFL 293


>gi|56710243|dbj|BAD80966.1| LysR family transcriptional regulator [uncultured bacterium]
          Length = 316

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 5/289 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF  V   GSF+ AAE L ++ ++++  +  LE  +G+ L  R+ R L LT+ G   
Sbjct: 6   AMQVFVRVVECGSFSRAAESLDIANATVTSSVRNLENYLGVTLLSRNTRSLRLTDDGEGY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               ++V  ++   + ++++   + SG+L I +     + LL   L  F   +P + + L
Sbjct: 66  FEQCNQVLQQIADMEAQVRQKKGEISGQLCIESPAAFARALLCPALPAFTAQHPGLSVAL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +   D+     D AIR+   +  + L+ R L   H  A AAP  LK    P   Q L
Sbjct: 126 RQTDHAEDLIATGTDVAIRI-DSVNDADLVARPLYQAHYVACAAPGLLKRIGTPQQPQAL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
              + +         + D+ +    +     PR   L  NS  +++Q  +   G+  + D
Sbjct: 185 LPQHCLGIFGAGRYTVSDWTFAREGEHHQLTPR-GELHFNSTDALIQAALAEQGVIYVLD 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             V     +  LV +  D  T S   Y   P++     + +AF  FI  
Sbjct: 244 VFVNGLIRSGELVELFPDWSTGSRNFYTVTPKSRFVAPRTRAFIEFILA 292


>gi|62289344|ref|YP_221137.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|189023597|ref|YP_001934365.1| LysR family transcriptional regulator [Brucella abortus S19]
 gi|254688659|ref|ZP_05151913.1| Transcriptional regulator, LysR family protein [Brucella abortus
           bv. 6 str. 870]
 gi|254696784|ref|ZP_05158612.1| Transcriptional regulator, LysR family protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254707908|ref|ZP_05169736.1| Transcriptional regulator, LysR family protein [Brucella
           pinnipedialis M163/99/10]
 gi|254729693|ref|ZP_05188271.1| Transcriptional regulator, LysR family protein [Brucella abortus
           bv. 4 str. 292]
 gi|256256906|ref|ZP_05462442.1| Transcriptional regulator, LysR family protein [Brucella abortus
           bv. 9 str. C68]
 gi|260761180|ref|ZP_05873523.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|261315399|ref|ZP_05954596.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|62195476|gb|AAX73776.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|189019169|gb|ACD71891.1| Transcriptional regulator, LysR family [Brucella abortus S19]
 gi|260671612|gb|EEX58433.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|261304425|gb|EEY07922.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
          Length = 304

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 133/300 (44%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 60  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 120 DIEVRLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S + L  D+H+ +      P   E +  L T +             +    + Q+ + G
Sbjct: 179 QSPEALLSDRHHCLLL--RFPGSKEYYWLLQTPEGLRKFEVTGPYGSDDGDVLTQWALGG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P + VK+   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 237 RGIINKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 296


>gi|190150237|ref|YP_001968762.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307263576|ref|ZP_07545191.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915368|gb|ACE61620.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871219|gb|EFN02948.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 294

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  +FT AA +L +SQS++SR I  LE+ +G++LF R  R L+LT  G
Sbjct: 6   NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L +   + + KL+     L      PSG++RI  +      +L   L +F   YP+IQ
Sbjct: 66  NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D    DI  +  D  +R    +    +  R      M    +P Y      P + 
Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPRTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +       M  ++++   +    + +      N Y SI     LG G+  
Sbjct: 186 SDLAHHQCLNYR-YASGAMYHWDFIVNHEHIKIKTQGQWTFSNDY-SIRDAARLGLGLGY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +   +V+   +   L++++ +        +  YP     +  LK   +
Sbjct: 244 ICKDLVQKELEKGELIQVLSEFSYTFTGFHLYYPH-RNTSPALKCVID 290


>gi|170693127|ref|ZP_02884288.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142125|gb|EDT10292.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 307

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 124/298 (41%), Gaps = 4/298 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +  F + A   SF+ AA +L L+ +++S+ ++ LET +G++LF R  R LTLT +G 
Sbjct: 4   LNLIESFVLSAEHLSFSAAARRLGLTPAAVSKNVARLETSLGLRLFQRSTRKLTLTTEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL R  +  +  L+           +P+G L+++  +  G+  L   L EFL  YP I  
Sbjct: 64  KLLREVAAPFTALQDAFAGAAVQDGRPAGTLKVSLGLAFGREYLVPLLGEFLEHYPAIVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+  D  D AI     +    ++ R+L   H+   A+P Y+     P    
Sbjct: 124 DWHFDNRPVDLIADGFDVAIGGGIELT-PGIVARELARTHVIVAASPAYMATRTMPRHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL   + I         +  +     V         + +  +   +I    + G G+A L
Sbjct: 183 ELSAFDGIVRRSSTTGRLRAWTLQNHVGEQYQAECRTRMIFDDPEAIAHAAMHGQGVAFL 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           P         +  L+R++         +   YP       + + F +F+    R  K 
Sbjct: 243 PMPHAAPWLASGALMRLLPAWYADQGPISIYYPNKKLLPARTRVFIDFVVDAFRKQKL 300


>gi|183179547|ref|ZP_02957758.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|229515337|ref|ZP_04404797.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229523971|ref|ZP_04413376.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229529021|ref|ZP_04418411.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|297579465|ref|ZP_06941393.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|183012958|gb|EDT88258.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|229332795|gb|EEN98281.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229337552|gb|EEO02569.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229348042|gb|EEO13001.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|297537059|gb|EFH75892.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 315

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  
Sbjct: 8   QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +   Q E+++   + +G +R+  +   G   +   L++    YP++ +++
Sbjct: 68  YAQCRELLTIVTNAQSEMEDQRDEVAGLIRLGLSQSFGTLHVLPALEQLRQQYPELNVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++        A+P YL     P     L
Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASPDYLLRYGSPTEPMAL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + +        +   W  + D      +++    V+   ++    V G GIA L 
Sbjct: 187 MEHNCLIYRS---WERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            Y+++D      L++++ +         Y  YP       K  A   FI  + 
Sbjct: 244 TYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRL 296


>gi|94312821|ref|YP_586030.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
 gi|93356673|gb|ABF10761.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
          Length = 317

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 135/304 (44%), Gaps = 14/304 (4%)

Query: 1   MSFDWDK-----LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D      + +F + A +GSFT AA    ++ +++SR IS LE  +G++LF R  R
Sbjct: 1   MHRHFDDVLLGSIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEKRLGVRLFVRSTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LTE G           ++L   + ++    V+PSG LRI+     G   L   L   
Sbjct: 61  SIRLTEGGRSYFEQCRGALNQLIEAERKVTGEQVQPSGTLRISAPTTYGHYRLLPLLPAL 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              +P ++ ++ + N++ID   +  D AIR R     S+++ R L    +   A+P YLK
Sbjct: 121 RERFPLLRFEVQIGNRNIDFHEENFDVAIRFRAQ-PDSTMVSRHLEDAELVVVASPGYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIM 232
               P ++++L +H  I F   +P       WL      +R +       L     L+ +
Sbjct: 180 RAGRPQALEDLQQHECIQFD--LPSSGRPIAWLFMDGGREREVLATESHYLCAEDVLAGV 237

Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                G+G+     +IV+    +  LV +++     S  V   YP       +++ F +F
Sbjct: 238 TLARSGAGLFQTYRFIVERDLADGTLVEVLQPFAGRSRPVSLMYPHGRLLPSRVRVFVDF 297

Query: 290 IFLK 293
           +  +
Sbjct: 298 LMEQ 301


>gi|317401295|gb|EFV81935.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 296

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 134/300 (44%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  VG++L  R  R + LT
Sbjct: 1   MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERSVGMRLLNRSTRKIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +  +      +L + +V+P G+LRI+    L Q  L   ++EF   +P
Sbjct: 61  EAGAIYFERCRHIVEEARIAHDQLLDMAVQPKGRLRISLPTSLAQLFLPAVIREFREQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+    L  + ID   +  D  +R  +    SSLI RK+V +    YA+P YL    EP
Sbjct: 121 DIECDFDLSMRPIDPISNPFDLILRFGQQ-PDSSLISRKIVLMAHQLYASPDYLARHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  +       +    F  L + D+         L  N+   + +    G G
Sbjct: 180 RVPADLTHHECL---RPTMRDESSFWMLHSGDKVERVQVSGRLSANNVGMLGRLAGQGLG 236

Query: 241 IALLPDYIVKD----NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L  +   +       LVR++ D       ++   P  +    K KAF +FI  +  D
Sbjct: 237 ITPLLVFDAMERAIKQAGLVRVLPDWSLTPLPLFALLPSRM-LPAKTKAFLDFIQPRLSD 295


>gi|325522808|gb|EGD01283.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 320

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+        +SV P G+LR+ +    G   +   + ++   + D+ +++ 
Sbjct: 67  ERLVQALSELDEAGQAGGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAERFSDVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHILLVASPAYLDKHGTPETIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +             N  A   R         L VN    +    + G+GIALL  
Sbjct: 187 AHHNYLRRDSNATMLDSMLNDAAAASRVTLS---GNLIVNHLEGLRAAVLGGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D I P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIESGRLVPVLIDAIPPRELPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|153825432|ref|ZP_01978099.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|149740978|gb|EDM55055.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
          Length = 312

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +PSG L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPSGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+   +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPVHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALTAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|120612005|ref|YP_971683.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120590469|gb|ABM33909.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 303

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 123/296 (41%), Gaps = 9/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L+ F  V    SF  AAE L LS S++S+ I  LE  +G +L  R  R +  +  G
Sbjct: 5   DYAELKAFVAVVERQSFARAAEHLGLSPSALSQTIRQLEGRIGARLLNRTTRSVAPSTSG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+R  + +  ++     E +E++ K  G LRI T     + ++   L  F   +PD  
Sbjct: 65  EQLYRRIAPLLREMAAAVAETREATGKVGGTLRINTLGIAARTVIAPRLARFHQAHPDAI 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +++D+   DI     D  +R+   ++   +  R    + M A A+P Y+     P S 
Sbjct: 125 LDIVVDDALADIVAGRFDAGVRVGGQLEKDMVAVRLTPDMPMVAVASPDYIARRGTPKSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +          + +     R I       +  N     +   + G GIA 
Sbjct: 185 ADLHGHACINWRLQEDGRHYRWEFRKRAQR-IEVAVDGPVVTNHADIGIAAALNGLGIAY 243

Query: 244 ------LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 + +++ +    LV+++ D       ++  YP        L AF + +  +
Sbjct: 244 HFERDGVGEFLAQ--GRLVQVLADWSISRPGLFLYYPSRRHRPALLGAFIDCLLDR 297


>gi|27375232|ref|NP_766761.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27348368|dbj|BAC45386.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 294

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 133/291 (45%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF +VA   SF  AA++L +S +  S+ +  LE  +G +L  R +R ++L+E G+   
Sbjct: 7   MRVFCLVAELKSFATAAQRLRISPAMASKHVMQLEKRLGTRLLNRTSRRVSLSESGALYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+  +  + +++V P G LR+   + +   +  G L ++   YP++ + + 
Sbjct: 67  EQARQMLDSLDEVEAAVSKATVVPRGTLRLTAPVWMANAIFAGVLADYQARYPEVCLDVD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + +++  +  D A+R        +LI R +  +     AAP +LK    P    +L 
Sbjct: 127 LSGRLVNLVEEGFDLALRATG-TPDEALIARPITKVPFLLVAAPAFLKRAGRPTKFADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L+ +  L P      N   TV+     P    L+  +   +    + G G A LP +
Sbjct: 186 GQALLHYA-LYPGESFSLNRNGTVETIKLNP---VLRSGNETLLHMAALEGMGFAFLPKW 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +V D+     LV ++ D I     ++  YP     + K++ F +FI    R
Sbjct: 242 LVADDIAAGRLVHMLPDDIIFEGRLFAVYPSRKYLSAKVRTFIDFIAADKR 292


>gi|330967847|gb|EGH68107.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 307

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 127/297 (42%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  ++SR+++ LE ++G++L +R  R ++LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAVSRRLAALENDLGVRLVHRTTRSVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    E  +  L+  +   SG LR+      GQ ++   L E +L  P +
Sbjct: 61  GEVFLPHAKTMLQASEAARATLKADAGTASGILRVTAPSVFGQTVIMPLLPELMLENPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL    +P  
Sbjct: 121 SIDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCASPDYLARRGQPTV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H  I    +                P+          NS  ++      G G+A
Sbjct: 180 LDDLRHHPCIALHGMPYWS------FTRDGDPVAIRAQGSFSANSVEAVRTASKQGLGLA 233

Query: 243 LLPDYIVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +L  + ++      +L +I  ED +    ++    P   +   +++ F + +  + +
Sbjct: 234 MLTYWDIQQEIREGSLRQIDFEDALPEQLSITAVLPTRQRVPHRVRLFVDRLEAELQ 290


>gi|311106187|ref|YP_003979040.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760876|gb|ADP16325.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           88 [Achromobacter xylosoxidans A8]
          Length = 297

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 131/299 (43%), Gaps = 9/299 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F  +A +GS T AA  L  S  ++SR +  LE +VG++L +R  R  +L+E G 
Sbjct: 4   LEDLEAFIHIAETGSLTKAARNLGRSLQAVSRSLVALEDDVGVQLVHRTTRHSSLSEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R       ++   ++E+ +    PSG LR+   +  G + L   + E++  YP I++
Sbjct: 64  AFFRRVKPAMEEIGEARLEVADRRAAPSGLLRVGAPVLFGPDFLVPVIAEYMREYPQIEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D++    D  +R+   +  S L  R+L  +    + AP Y +    P    
Sbjct: 124 DLQLTDAFVDLAAAGLDLVVRIAD-LPDSGLQGRRLGALRRVVFGAPSYFEQHGRPAHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL +H  I    +     +   W   +D       +    + N+  +I     +G GI  
Sbjct: 183 ELRQHACI----VRTVDQQSGQWAFQIDGKRRNVGVRGPFRTNTMAAIYSAVSVGLGIGY 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            P + ++   D   +  I+E+  +    ++  + E      K++AF +++    +  +F
Sbjct: 239 SPLWQIRHLLDTGQVEVILENFESKPVPIHALWQENRLPPAKVRAFVDYLAAGLKLDRF 297


>gi|290473461|ref|YP_003466328.1| regulatory protein, LysR:LysR, substrate-binding [Xenorhabdus
           bovienii SS-2004]
 gi|289172761|emb|CBJ79532.1| Regulatory protein, LysR:LysR, substrate-binding [Xenorhabdus
           bovienii SS-2004]
          Length = 302

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 127/295 (43%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L VF  +  +GSFT  A+ L LS +++S+QI+ LE  +G+ LF R  R L +T +G
Sbjct: 5   NLEDLSVFIRIIDTGSFTATAQALGLSPTTVSKQIARLEKNLGVVLFVRSTRSLRITPEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +          +E      ++ S   +G +R+   + LG+  +   + EF   YP + 
Sbjct: 65  KAIAEKVRAALTLVEEATEIAKDGSESLTGLIRLTAPVPLGRTYVAAAIAEFRKKYPSVG 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L +K +D+     D AIR+   +  S LI R+L        A+P YL+   E    
Sbjct: 125 FILHLTDKIVDLYKVEMDLAIRVAN-LTDSGLIARRLTDNKRILVASPDYLRLHGELQHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H+ + F     K       L            S L  N+   +  +C  G GIAL
Sbjct: 184 EELINHHCLLFSASGNKSTIWS--LHDRKGTKAISLSSDLIANNGDVLRTWCTAGLGIAL 241

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V D      L++I+ +    +  +            ++K+F  F+  + R
Sbjct: 242 RETWDVVDLIRAKKLIQILPEWQEETSPINLVRAGKRPVPQRIKSFIEFLTEEWR 296


>gi|254523395|ref|ZP_05135450.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219720986|gb|EED39511.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 303

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D + +R+   VA + SFT AA QL LSQS +SR IS LE  +G+KL  R+ R + LT 
Sbjct: 9   SLDLNAVRMLVQVAEARSFTVAAGQLGLSQSGLSRAISRLEATLGVKLLQRNTRNVALTP 68

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +     + +    +  + +L +    PSG L+I+     G+ +L   L   L  +P 
Sbjct: 69  DGRQFVDQVAPLLCGFDDAERQLADRPCTPSGTLKISAPSMFGRKVLVPLLGPLLQQHPQ 128

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++ +L ++ +D+  +  D A+R    I    ++ R L  +     A+P YL  C  P+
Sbjct: 129 LQVEAVLSDRLVDLVEEGFDAALRTG-TIADQRMVARPLKPLRWLTVASPDYLARCGAPV 187

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +  L  H  +   +L    + D+ +L         P  + +  +    +++  + G GI
Sbjct: 188 DVAALQDHACLAVRNLRSGRLVDWQFLQDGQLREVTPP-ARMVFDCGDPLVEAAIAGIGI 246

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             + D+ V D   +  L R+++     S  +   YP + +++ KL+   + +  
Sbjct: 247 VQVMDFAVADALADGRLQRVLQPFEGRSRALSLIYPPSRQHSPKLQVLADALLA 300


>gi|187923402|ref|YP_001895044.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714596|gb|ACD15820.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 329

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 130/299 (43%), Gaps = 9/299 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+ 
Sbjct: 61  ALTEAGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTVSQTILSQILPEFMH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ +D+  D  D A+R+R  P ++++++ R L         AP  L+ 
Sbjct: 121 RYPEVRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L+     T           +N +A             L     ++I +  +
Sbjct: 181 NAPPLLPADLNGFE--TLDVPTGDGRHVYNLIAPDGTRHAHEHEPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G GIA LP+ +         L  +M     P+  +Y  +         ++AF +++  
Sbjct: 239 AGVGIAALPEMMYGAALRAGQLSPVMPGWTFPTPQLYAVFVSRQGMVPAVRAFVDYLVE 297


>gi|170770092|ref|ZP_02904545.1| transcriptional regulator, LysR family [Escherichia albertii
           TW07627]
 gi|170121049|gb|EDS89980.1| transcriptional regulator, LysR family [Escherichia albertii
           TW07627]
          Length = 307

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGLPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   D          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLVIKERDHPFGVW--QLHNKDGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +L++++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLLQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|153212179|ref|ZP_01947974.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124116731|gb|EAY35551.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
          Length = 308

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 129/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE
Sbjct: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP+
Sbjct: 61  SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  SSLI R L        A+P YL     P 
Sbjct: 121 VVPYLYLNDNISNLAESGLDVVIRYGE-LADSSLISRNLAPSRRVLCASPAYLARKGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W    +       I      +    I Q+ + G G
Sbjct: 180 TPQDLVQHDCLA---MVRSNEEMKTWHFQENEQHKVITIVPKSFADDGEVIRQWALAGMG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+D+     LV +++  +             +   Y        +L+ F +F
Sbjct: 237 IALKSILDVQDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LIEQ 300


>gi|153947540|ref|YP_001399540.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959035|gb|ABS46496.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
          Length = 318

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +  F  V  +GSFT AA+ L L ++ +S+++S LE  +G++L  R  R L LTE
Sbjct: 1   MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +++  +  L+  SV+P GKLR+   + + + ++  +L EF   YP+
Sbjct: 61  DGQAYFAKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L   ++   +  +  DCAIR    ++ SS I R +  +H+  YAAP YL+      
Sbjct: 121 ISVRLGGSDRISHLLDNGIDCAIR-GGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             QEL  H  I++          F W L +       P    L  +     +  C+ GSG
Sbjct: 180 HPQELSVHRRISW---FTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I     + V+       LV ++      +  ++  YP     + +++ F ++
Sbjct: 237 ICPGAPFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDW 288


>gi|167578018|ref|ZP_02370892.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|257142726|ref|ZP_05590988.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 322

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 124/293 (42%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    P
Sbjct: 60  ESGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L KH  +          E        +  +     +  Q N   ++      G G
Sbjct: 180 TTPEDLAKHVCLRLDTPASPGGEWRLERDDGEETVYALPPAPFQANVPDALSVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F + +
Sbjct: 240 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHL 292


>gi|163857676|ref|YP_001631974.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261404|emb|CAP43706.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 321

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 121/290 (41%), Gaps = 4/290 (1%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
             F  VA  GSFT AA  L +S S++S+ + GLE  +G++L  R  R + LTE+G +  +
Sbjct: 21  HAFTRVAHHGSFTRAAADLGVSASALSQTVRGLEARLGVRLLNRTTRRVALTEEGQRFLQ 80

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                   +     ++ ++  +P+G LRI T+      L+  +L EF   YP I ++L L
Sbjct: 81  RVQPALGAIGDALEDMDDTRGRPAGTLRINTSRVACAMLVTPHLAEFTGRYPGIVLELFL 140

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-EPLSIQELD 187
           D+   D+     D  IRL + +    +  R      M    +P Y +     P    +L 
Sbjct: 141 DDGLSDLVAGGFDAGIRLGENLARDMVAVRISRNQRMVTAGSPAYFRQYGNPPRQPADLA 200

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA-LLPD 246
            H  I         +  + +     + +       +  N +  ++Q  + G G+  +L D
Sbjct: 201 AHACIGTRFETRGTLYRWEYRQPDGQLLEVDVPHRIVTNDFALMVQAALDGLGLIHVLED 260

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            I     +  L  ++E         Y  YP   +   KL+ F +F+  + 
Sbjct: 261 PIAAHLASGALQPVLESWAADFPGFYLYYPHRTQMAPKLRVFVDFLRERL 310


>gi|165976329|ref|YP_001651922.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303251233|ref|ZP_07337411.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303253055|ref|ZP_07339206.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247898|ref|ZP_07529933.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307252535|ref|ZP_07534431.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|165876430|gb|ABY69478.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|302648087|gb|EFL78292.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302649775|gb|EFL79953.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306855589|gb|EFM87757.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306860127|gb|EFM92144.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 294

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  +FT AA +L +SQS++SR I  LE+ +G++LF R  R L+LT  G
Sbjct: 6   NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L +   + + KL+     L      PSG++RI  +      +L   L +F   YP+IQ
Sbjct: 66  NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D    DI  +  D  +R    +    +  R      M    +P Y      P + 
Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPRTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +       M  ++++   +    + +      N Y SI     LG G+  
Sbjct: 186 SDLAHHQCLNYR-YASGAMYHWDFIVNHEHIQIKTQGQWTFSNDY-SIRDAAKLGLGLGY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +   +V+   +   L++++ +        +  YP     +  LK   +
Sbjct: 244 ICKDLVQKELEKGELIQVLSEFSYTFTGFHLYYPH-RNTSPALKCVID 290


>gi|152968608|ref|YP_001333717.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953457|gb|ABR75487.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 309

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 122/299 (40%), Gaps = 11/299 (3%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    L +F  +   GSF+  A Q  ++ S++SR +S LE E+G KL  R  R L L
Sbjct: 1   MNLNLLPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           ++ G  +++   ++                   GKL ++    +G+ ++   +  F   Y
Sbjct: 61  SDAGETIYQHAQQMLEAARQAMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L L+++ +D   D  D A+R+     S  L  + L+ I     A   YL+    
Sbjct: 121 PQVDVCLRLEDRPLDFIDDGIDLALRITD-TPSPGLHGKPLMPIRHVICATEAYLQQHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + Q+L  H+ I+ G+        F       +            N     +       
Sbjct: 180 PYTPQDLRSHSCISLGETPADARWKFR---REGKTETVQTYGRYAANHTAVRLDAVRQHL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP +  ++   N ++V+++ +     + S  ++  +        +++A  +++  
Sbjct: 237 GIGSLPLFTAREALANGDIVQVLPEWEFISSYSGDLWLLWAGDKHMPARMRAMIDYLSE 295


>gi|13474213|ref|NP_105781.1| LysR family transcriptional regulator [Mesorhizobium loti
           MAFF303099]
 gi|14024965|dbj|BAB51567.1| transcriptional regulator (LysR family) [Mesorhizobium loti
           MAFF303099]
          Length = 296

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 125/288 (43%), Gaps = 5/288 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   VA+ GSF  AA +L ++ S++S  +S LE  +G++L  R  R +  TE+G+
Sbjct: 6   LSQLAVLATVAQCGSFRGAARELAIAPSAVSHAVSSLEARLGVRLLARSTRSVAPTEEGA 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L         +++       E+  +P+G LR++        +L   L  F   YPDI +
Sbjct: 66  QLLERLRPALSEIDLALETALEARDRPAGNLRLSVPRTAAHLVLTPRLGAFAKAYPDIVL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++++++  D+     D  +RL + +Q   +  R    +      AP Y      P   +
Sbjct: 126 EILIEDRFTDVVEGGFDAGVRLGESLQRDMIAVRIGPDMRGAVVGAPSYFAAMPRPHHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I F              A     I       L ++    I Q  + G+G+A +
Sbjct: 186 DLADHRCIRFRFSSGILYRWE--FAKGGEEIEIAAQGPLILDEDHLIAQAAIDGTGLAFV 243

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +  V+    +  L+R++ED   P    +  YP   +    L+AF +F
Sbjct: 244 FEPYVRAPLADGRLIRVLEDWCPPFEGFFVYYPSRRQMRPALRAFVDF 291


>gi|115358090|ref|YP_775228.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283378|gb|ABI88894.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 302

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 135/291 (46%), Gaps = 8/291 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   A+S SFT AAEQL L++S++ + I+ LE  +G +LF+R  R ++LT  G      
Sbjct: 12  IFVTAAKSRSFTDAAEQLGLTKSAVGKAIAKLEDRLGAQLFHRTTRSISLTADGEAYFAA 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +    ++ T +  +   + +P G+LRI      G+ +L   L +    +PD+Q  +   
Sbjct: 72  CTSALDEIATAETAIGPGNQRPVGRLRIDMPAAFGRRILVPILLDIGRKHPDLQFTMTFS 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID   +  D  IR  +   S+ LI R+L    M   A+P YL     P +++ L+ H
Sbjct: 132 DHLIDPIEEGVDLVIRFGELQSSAGLIARRLTRQRMLIAASPDYLSRRGTPGNLEALEHH 191

Query: 190 NL-ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           +  + +   +P        +    +          Q++   SI+Q  + G G+  +P  +
Sbjct: 192 SCVVGYRRGLPLSWR----VKINGQAQRISPPGTHQISDGDSIVQAALAGMGLCQMPMSL 247

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++   D+  L+ ++EDV +    V+  +P+      K++   + +   A  
Sbjct: 248 LRPYLDSGALLPVLEDVSSELIDVHAVWPKVAHLRPKVRHVVDTLVEIAEQ 298


>gi|328469907|gb|EGF40818.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 295

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 122/284 (42%), Gaps = 11/284 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  V  SGSFT  AE+L +S+  ++R +  +E  +  +L +R  R ++LT  G +   
Sbjct: 8   KVFVDVVYSGSFTATAERLDMSRPMVTRYVEAMENWLQTRLLHRTTRKVSLTTAGERSLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  + + T         + SGK+R+A++   G + L   +  F+  +P + I + L
Sbjct: 68  QIERWLKQAD-TLTSNIAVDGELSGKIRLASSTSFGFSQLIPAVNSFMQKHPKVHIDIDL 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +   D++    D AIR+       SLI + +        A+P YL+  R     ++L  
Sbjct: 127 QDSVSDLTEQRIDLAIRIASD-PDPSLIGKPIAVCESVLVASPQYLQTHRAIAHPRDLSS 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H+ + +     K  E   W  +         I C L  N   +++   + G GI++LP Y
Sbjct: 186 HDCLGY-----KNFERHVWHLSQGDQFESVGIECRLTSNEATALLHGALQGMGISMLPTY 240

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +      +  L  ++ +       +Y  Y      +  ++AF +
Sbjct: 241 LSNIYLQSGQLESVLPNWKPNDLNIYALYSSRKHLSPAVRAFID 284


>gi|254000061|ref|YP_003052124.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253986740|gb|ACT51597.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 307

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 129/295 (43%), Gaps = 4/295 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +  F   A  GSF+ AA +L ++   +S+ +  LE ++G++LF R  R LTLTE G
Sbjct: 3   TLRGIESFVRSAELGSFSAAARRLSMTAGGVSKNVGKLEADMGVRLFQRSTRKLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +  +     ++        +  KP+G L++   +  G++ +   L EFL LYPDI+
Sbjct: 63  EQFLQQVAGGLDTIQAAIANTSNAGGKPAGTLKVGMAMAFGRDQILPLLGEFLRLYPDIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+  +  D AI     I S  ++ R+L  +H+   A+P YLKN   P + 
Sbjct: 123 PDWRFDNRQVDLIAEGFDVAIGGGIQI-SPGIVMRQLAKVHLILVASPGYLKNKILPKTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L   + +         +  ++        +    +    +N   ++ +  ++  GI  
Sbjct: 182 EDLYTFDTLMRFSQTTNRVTPWHLRTKTGEQVTVEPLPRAILNDPEALCRAALMDLGIVH 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +P         + +LVR++    +    +   +        K + F +F+    R
Sbjct: 242 VPMPHATPYLRDGSLVRVLPGWYSEGGEISIYFTAKKLMPAKTRVFIDFVIEHFR 296


>gi|51597721|ref|YP_071912.1| LysR family regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186896905|ref|YP_001874017.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|51591003|emb|CAH22662.1| LysR-family regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186699931|gb|ACC90560.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
          Length = 318

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +  F  V  +GSFT AA+ L L ++ +S+++S LE  +G++L  R  R L LTE
Sbjct: 1   MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +++  +  L+  SV+P GKLRI   + + + ++  +L EF   YP+
Sbjct: 61  DGQAYFAKCQVILQEIDELEGALKGGSVEPRGKLRIEALVSVARWVIAPSLHEFQARYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L   ++   +  +  DCAIR    ++ SS I R +  +H+  YAAP YL+      
Sbjct: 121 ISVRLGGSDRISHLLDNGIDCAIR-GGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              EL  H  I++          F W L +       P    L  +     +  C+ GSG
Sbjct: 180 HPHELSVHRRISW---FTGQRNPFIWSLQSTSDAFELPAEEGLLFDDPDVALASCMAGSG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I     + V+       LV ++      +  ++  YP     + +++ F ++
Sbjct: 237 ICPGAPFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDW 288


>gi|260769565|ref|ZP_05878498.1| putative transcriptional regulator LysR family [Vibrio furnissii
           CIP 102972]
 gi|260614903|gb|EEX40089.1| putative transcriptional regulator LysR family [Vibrio furnissii
           CIP 102972]
          Length = 293

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 136/294 (46%), Gaps = 15/294 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  SGSF+ AAE + +  + +SR +S LE ++GI +  R  R L LTE+G +
Sbjct: 6   DDLEILITVVDSGSFSQAAEVMDVQVAKVSRAVSRLELQLGITILNRTTRRLELTEEGKR 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +L   + ++      P GKLR+        + L   ++EF   YPDI ++
Sbjct: 66  FVESVRAGLQQLRQAEEDIVSRGELPKGKLRVDAASPFMLHQLVPLVREFHAAYPDIDLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    ++  A+P YL     P + QE
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LNDSTLHARPLGKSALYVVASPDYLAQRGFPTTPQE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+++ F       +   N          EP I+C   +S  ++ Q  + G+GIA L 
Sbjct: 185 LHQHDIVGFTAPRTLNIWPLN-----GTEFIEPTIAC---SSGETVRQLVIAGNGIACLS 236

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLK 293
            ++VK++     LV +++           +   Y ++     ++ AF +FI  K
Sbjct: 237 GFMVKEDIAAGRLVALLDSHRKLHSDREFINAVYYKSSNVARRISAFIDFIQPK 290


>gi|157372626|ref|YP_001480615.1| putative DNA-binding transcriptional regulator [Serratia
           proteamaculans 568]
 gi|157324390|gb|ABV43487.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 303

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 130/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVECGSFTAAARQLDMSVSSISQTVSKLENELQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  ++     +L   +  P+G LRI ++  + QN+L     + L  YP + +
Sbjct: 64  IYYQGCRRMLLEVSEVHEQLYAFNNTPTGTLRIGSSSTMAQNVLATMTADMLKEYPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR    +Q SSL  ++L ++ M   AA  YL     PL   
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRTGA-LQDSSLFSKRLGSMPMVVCAAKSYLSQHGTPLKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMVNFSWLEYSVRPDS---EFELIAPEGISTRISPQGRFVTNDSQTMIRWLKAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + ++  +    VY  Y E  K   K++   N++  
Sbjct: 240 PLMWVIEEIKRGEIEILFKNYHSDPRPVYAVYTEKDKLPLKVQVCINYLTE 290


>gi|50086563|ref|YP_048073.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49532537|emb|CAG70251.1| putative transcriptional regulator; putative transcriptional
           activator [Acinetobacter sp. ADP1]
          Length = 302

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 139/298 (46%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GS   AAEQL  + S +SR ++ LE ++ + L  R  R + LT
Sbjct: 1   MKSTVEELIAFITIVDTGSIVGAAEQLQQTPSGVSRSLNRLEKKLNVTLLERTTRKIKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++GS        +   L   +  L +S    SG +RI +      ++L   +++F+ LYP
Sbjct: 61  QEGSLFLMRARTILADLSDAEEALLKSDSDTSGLIRIDSATPFVLHVLAPLMQKFMQLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I+L  +++ ID+     D AIR    +  SSL  R +    ++  A+P YLK    P
Sbjct: 121 HIEIELNSNDQVIDLLQHKTDVAIRFGA-LHDSSLHARLICKSRLYIVASPDYLKKAGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              QEL +H L+ F    P  +  +      +     P+I   + +S  ++ Q  + G G
Sbjct: 180 SHPQELFQHQLVGFSK--PVYLNTWPLKIEDEYITVHPQI---KASSGETVRQLTLRGHG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L +Y +  +    +L+ + ED I      ++  Y +      +++ F +F+  + 
Sbjct: 235 IARLSEYEIWQDLQAGSLIALFEDQIEIQLQHIHAVYYQQKHLPKRVRLFIDFLADEL 292


>gi|116050063|ref|YP_791123.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389464|ref|ZP_06878939.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313111051|ref|ZP_07796886.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|115585284|gb|ABJ11299.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310883388|gb|EFQ41982.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 310

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 125/295 (42%), Gaps = 8/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++  F  V  + SF+ AA +L  ++S +S++I  LE  +G  L  R    L+LT+ G 
Sbjct: 4   FAEMTTFVSVVDARSFSEAARRLGTTKSQVSQRIQQLERRLGRVLLNRTRP-LSLTDPGR 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  +  + ++     G+LR++  +      L   L  F   +P +++
Sbjct: 63  TYYEHACRLLQELEQAEASVLDADDDLRGQLRLSAPLAFTPRYLAPLLARFAERHPQLRV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +++     D A+R+ + +  S L+ R +        A+P YL     P   +
Sbjct: 123 DVQADDRFVNLQEPRFDMALRMGR-LDDSCLVARPITANRHLLCASPDYLARHGVPQHPE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ + + +  P  M     L     P        ++ +S   +++    G G+A+L
Sbjct: 182 ELQAHDGLVYYNREPGGMLC---LPVDGEPASFRIRVRMRTDSGHQLLEGARAGLGLAIL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P ++  D      L+ ++         V   Y +  +   K+     F+  +  D
Sbjct: 239 PSFLAADALLAGELLPVLPGYSPDGGQVSVVYRKTQRTPRKILVLGQFLEEEIGD 293


>gi|294676371|ref|YP_003576986.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294475191|gb|ADE84579.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB
           1003]
          Length = 302

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 129/299 (43%), Gaps = 6/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++LR F   A++GSFT AA+QL +S    S+ ++ LE  +G++L  R  R + LT
Sbjct: 1   MDIT-EELRAFVATAQTGSFTAAADQLGVSNRLTSKYVAELEARLGVRLLQRTTRRVGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+ L      +   L+     + E S   SG +R++  + LG+  + G L  F   +P
Sbjct: 60  PAGADLLARAPALLDDLDDLLAGVSEGSRGFSGVIRLSAPVTLGEIYVGGMLARFAAAHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   L L ++ +D++ +  D A R+ +  +  SL  R+L        A+P YL     P
Sbjct: 120 GLSFDLRLSDRFVDLAREGIDLAFRIGRS-EMLSLKARRLGESRTVVVASPAYLAAHGTP 178

Query: 181 LSIQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              ++L +H+ I       P+  +     A               VNS  +  +  + G 
Sbjct: 179 AEPEDLARHDCIVDTNRQQPRRWQFHPGSAQAGAAQEVTVQGRFHVNSARAAAELAIAGL 238

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA  P + V    D   LV ++    +P   V   Y E      KL+A  +F     R
Sbjct: 239 GIAHAPRFAVCGALDTGALVPVLSGFHSPPSPVSAVYLEGRVLPRKLRALIDFAAEDIR 297


>gi|58581747|ref|YP_200763.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623651|ref|YP_451023.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576832|ref|YP_001913761.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188577025|ref|YP_001913954.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426341|gb|AAW75378.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367591|dbj|BAE68749.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521284|gb|ACD59229.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521477|gb|ACD59422.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 337

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H  ++  +       + +      R   +PR++      +  +      G GI 
Sbjct: 188 PSELANHTTMSTSEDEAHQRWELHGPNGERRVDLQPRLAGF---DFPLLQSMARDGFGIT 244

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LP+ +  +   +  L  ++     P    +  +         ++ F +F+  
Sbjct: 245 MLPETVCAEAVRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 297


>gi|221211290|ref|ZP_03584269.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168651|gb|EEE01119.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 310

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE      GK+R+++T D G+N L   L EF   +PD
Sbjct: 61  EGRLYLNCCRQALQALDDADAMLQEGRNVVGGKVRLSSTSDFGRNQLLDWLDEFTARHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L   +   ++  D  D AIR   P    +LI R+L        AAP +++    P 
Sbjct: 121 VTFSLTASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFIERYGTPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPNDLARFPCNVITIASGPMNTWRFTRGDEVQTYTVPMSNAFETNDGGLTREWTLRGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           AL   + + D+     L  ++ +       ++  Y        +++   +F+  + AR+
Sbjct: 240 ALKSLWDIADDVRAGRLRVLLPEWRHQDAPLHAIYHSKRYMAPRVRVLLDFLAERFARE 298


>gi|153832285|ref|ZP_01984952.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148871596|gb|EDL70451.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 309

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 130/294 (44%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G 
Sbjct: 4   LNDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I
Sbjct: 64  LFLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIELYPNVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+     D AIR  +P   S+L+   L         A+P Y+ +  E    
Sbjct: 124 KLELSDSLTDMYTKPVDIAIRYGEP-ADSNLVVLALCGANERILCASPEYVASNPELTKP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  HN + +        +   W  T +    +  +S  L  N      +  + G GIA
Sbjct: 183 EDLHLHNCLCYMVADSVYNK---WTLTREGETEQVVVSGKLLSNDSDLSHRLAIKGKGIA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 +  +     LVR++ +       +Y    +    T  ++ FR+FI  K
Sbjct: 240 NKSLMDISQDLIEGRLVRVLPEWDCGPVPLYMVCADRRLLTPTIRTFRDFIQEK 293


>gi|217972392|ref|YP_002357143.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217497527|gb|ACK45720.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 314

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 122/308 (39%), Gaps = 19/308 (6%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT 
Sbjct: 1   MDRLEAAKVFVTIVERGSMVSAANALDMSRSMVTRYLSEMEEWSGARLLHRSTRSLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +             S   P G LRI+ +  L   +L   ++++L  YP 
Sbjct: 61  AGEQVLDYCHRLLELANEVPAVSHASVAIPRGLLRISCSQFLAHQILAPVVRQYLASYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             + + + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      +
Sbjct: 121 ASVNIHVSSQTVDLVAERIDLAIRITNEL-DPNLIARRLGECESVVCAAPSYLAARAAVV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--------------DRPIGEPRISCLQVNS 227
             ++L +HN +T+          +                     +    P       N 
Sbjct: 180 HPEDLTQHNCLTYSYFGDVMWRFYQADVAAKQAQAPNSDPKLNQGQAFNVPVNGNFSAND 239

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y         L+
Sbjct: 240 SMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVYQSRKHMQPALR 299

Query: 285 AFRNFIFL 292
              + +  
Sbjct: 300 VMMDMLVA 307


>gi|238752486|ref|ZP_04613961.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia rohdei
           ATCC 43380]
 gi|238709249|gb|EEQ01492.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia rohdei
           ATCC 43380]
          Length = 297

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AA+ L +S++ ++R ++ +E   G +L +R  R L+LT  G     
Sbjct: 8   EVFVAIVERGSMIGAADALEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTHAGEATLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +   + + +  G LRI+ +  LGQ+ L   + E+L  YP + + L +
Sbjct: 68  RCRRMLEFAQDMDLIEGQENDELRGLLRISCSQSLGQSALVIAVTEYLRRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L T H    AAP YL     P +  +L  
Sbjct: 128 NNRAVNLVEERIDLALRITNEL-DPNLIARPLATCHSVVCAAPAYLLAKGTPKTPSDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                            L  N  + ++   + G+GI L P Y 
Sbjct: 187 HNCLTYSYFGKSLWH----FDQQGVQSSVAVGGNLSANESVVLLSGALEGAGITLQPSYS 242

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              +     L++++ D    +  +Y  Y    +  G L+A  +++  
Sbjct: 243 AAPHIARGELIKLLPDYQPQAMGIYGIYTSRRQMPGTLRAMLDYLVE 289


>gi|86358163|ref|YP_470055.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282265|gb|ABC91328.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 307

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E G++L  R  R L LT+ 
Sbjct: 2   LDLNDIVIFARVVEAGSFTVAARLLAMPKTTVSRRIAALEREFGVRLLQRTTRSLRLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +SE    LE   + L E+  +P+G +RI+  +  G + L   + +FL  YP  
Sbjct: 62  GRLYYEESSEALRTLEQANLRLAEARAEPAGTIRISAPVGFGGHFLAAAIFDFLAAYPKT 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++  +  D A R    ++ S+LI RKL + +    A+P YL  C  P  
Sbjct: 122 KVELRLTDDRLNLIENGIDLAFRTG-ILEDSTLIARKLGSTYRILCASPGYLARCGTPGR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H+ +  G   P        L   D             N   ++M   + G GIA
Sbjct: 181 PADLTAHDCVIAG---PSAANAPWVLEGADIRETVTVSGRFAANEMQAVMAAAIAGYGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK--ARD 296
            LP  + +    +  L R+++   TP+  ++  YP +   +  +KAF +    +  ARD
Sbjct: 238 QLPHGVAEACIADGRLRRVLDGYTTPAGGLHVVYPSSQHLSPLVKAFIDLAATRLNARD 296


>gi|260773993|ref|ZP_05882908.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260610954|gb|EEX36158.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 311

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 129/295 (43%), Gaps = 10/295 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G ++
Sbjct: 12  DLATFILVVNEGSFTAAAHKLGVTPSALSKLITRLELALNVKLFERTTRKLMITQAGQRV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     + +  +           +PSG L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQCLVMINAAQQAVDLSDADHSEPSGSLTVAAPEAFLHSVLQPFVLPFLKQYPYIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+     D A +L       +L+ R+L   ++   A+P YL+    P    EL
Sbjct: 132 RAADGEIDLFRHNIDVAFKLTDK-PDENLVMRELCKTNLVLCASPDYLQQRGVPAHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +   +     + DF      D            VN     +     G GI +  D
Sbjct: 191 IEHDCLYLAETERDHIWDF---LKEDEFHTVAVTGRYAVNQSQIRLNAVKSGLGIGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++V+D      +V+++++    S     +   Y +      +L+ F +F+    +
Sbjct: 248 FVVQDAIAEGKVVQLLQNWTIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLAHLK 302


>gi|71734272|ref|YP_273747.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554825|gb|AAZ34036.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 302

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 139/297 (46%), Gaps = 9/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA +GSFT AA++L L+ S++S+ ++ LE+ +G++LF R  R L LTE+G+
Sbjct: 7   LKGIETFVAVANAGSFTAAADRLSLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H V + +   LE  +  L     +P+G+LRI      G+      +  F   +  ++ 
Sbjct: 67  AYHAVCTRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   ++ +DI  +  D A+R+  P +  + +  R L T  +   AAP YL+    P + 
Sbjct: 127 RITFTDRFVDILEEGIDLAVRIGGPAVWPAGVAHRYLGTERVIFCAAPAYLERHGIPTTF 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           ++L  H  I FG           WL   D+   E R   + L + +  + +       GI
Sbjct: 187 EDLASHACILFGRGDGSTSP---WLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGI 243

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L  +++++      LV I+  + T    ++  +P   ++  K++A    +    R
Sbjct: 244 AQLATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQALVERLSEALR 300


>gi|15803777|ref|NP_289811.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 EDL933]
 gi|25319769|pir||G85988 probable transcription regulator LYSR-type yhcS [imported] -
           Escherichia coli (strain O157:H7, substrain EDL933)
 gi|12517867|gb|AAG58371.1|AE005552_1 quorum sensing Escherichia coli regulator A [Escherichia coli
           O157:H7 str. EDL933]
          Length = 309

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVXEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++++++   G+GIA +
Sbjct: 183 DLSSHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P  +++ +     L  ++    +    VY  Y E  K   K++   N
Sbjct: 240 PLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 286


>gi|16759134|ref|NP_454751.1| lysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140684|ref|NP_804026.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|289823723|ref|ZP_06543335.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25513084|pir||AH0519 probable lysR-family transcription regulator STY0159 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501424|emb|CAD01296.1| putative lysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29136308|gb|AAO67875.1| putative LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 313

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 125/291 (42%), Gaps = 6/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 15  LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++       +S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 75  ASIRPALNHIDEAMEHACQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLSIQEL 186
           +++  +D+  +  D  IR    +Q    +   L  +      A+P YL     PL  QEL
Sbjct: 135 VNDGFVDLINERFDAGIRFGDAVQLDMNVV-PLGDVLRPAIVASPAYLARFGTPLHPQEL 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +         +  + ++    R    P  + L VN     +     G+ +  + +
Sbjct: 194 INHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAELTYVFE 252

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 253 QDVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 303


>gi|294339059|emb|CAZ87408.1| Putative Bacterial regulatory protein, LysR, ycjZ [Thiomonas sp.
           3As]
          Length = 302

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 131/290 (45%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L+ F  VAR  SFT AA Q+ +SQS++S ++  LE ++G++L  R  R +  TE G
Sbjct: 5   DFNDLQAFIAVARERSFTRAAAQMGVSQSALSHRMRALENQLGLRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++ +    L+E   KPSG +RI         +L   L+  L  YP++Q
Sbjct: 65  ERLLQTLAPRFEEIGSELAALRELRDKPSGLIRITAAGHAADTILWPRLQAVLPQYPELQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ LD    DI     D  +RL + ++   +  R    + M   A P Y      P + 
Sbjct: 125 VEINLDYGFTDIVSQRFDAGVRLGESLEQDMIAVRIGPDLRMAVVATPAYFARHPPPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  HN I     +P+              +          N+   +++  ++G+G+A 
Sbjct: 185 QDLATHNCINL--RLPRGGLLAWEFERDGHALNVHVQGQWVFNTSSPLLRAALVGAGLAY 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P+    ++    +L R++ D        +  Y    +++  L    + +
Sbjct: 243 VPEDAALEHIATGHLQRVLLDWCPRFVGYHLYYASRRQSSRALAVVVDAL 292


>gi|254481971|ref|ZP_05095213.1| LysR substrate binding domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037661|gb|EEB78326.1| LysR substrate binding domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 305

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 133/297 (44%), Gaps = 7/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  + R GS + AA+ L +S+SS+S+Q+  LE ++G +LF R  R + LTE G
Sbjct: 7   NIRGLILFSHINRQGSLSAAAQLLGISRSSVSKQLVALEEQIGSRLFNRTTRRIALTEVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     +V   L++ +   ++S    +G L +      G+  L   +  FL  YP + 
Sbjct: 67  KQVLLEAHKVELALQSIEHISEDSQSVVAGNLNVTCASAQGRIQLVPLITRFLAKYPQVN 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L+++ +D+  +  D +IR+   +  SSL+ RK+  +     A+P YL       + 
Sbjct: 127 VNLQLEDRFVDMVAENVDVSIRVGY-LPDSSLVARKIGELAGVLCASPEYLSTAPPLETP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + + +               +          L +N   +++   +   G+ L
Sbjct: 186 SDLLHHRCLFYQNSQLAMKAWS--FVGNEGEETVTVSGPLSINDPGALISAALAHVGVLL 243

Query: 244 LPDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   ++ D   +  LV ++    +  S  +Y  YPE      K +A  +F+  +  D
Sbjct: 244 IDKGLLGDTLRDGKLVPVLPGYCSIGSLPIYVVYPEREFVPAKTRALVDFLLHEMPD 300


>gi|298486065|ref|ZP_07004135.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298159413|gb|EFI00464.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 302

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 139/297 (46%), Gaps = 9/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA +GSFT AA++L L+ S++S+ ++ LE+ +G++LF R  R L LTE+G+
Sbjct: 7   LKGIETFVAVANAGSFTAAADRLSLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H V + +   LE  +  L     +P+G+LRI      G+      +  F   +  ++ 
Sbjct: 67  AYHAVCTRMLADLEAAETALAAQLTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   ++ +DI  +  D A+R+  P +  + +  R L T  +   AAP YL+    P + 
Sbjct: 127 RITFTDRFVDILEEGIDLAVRIGGPAVWPAGVAHRYLGTERVIFCAAPAYLERHGVPTTF 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           ++L  H  I FG           WL   D+   E R   + L + +  + +       GI
Sbjct: 187 EDLASHACILFGRGDGSTSP---WLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGI 243

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L  +++++      LV I+  + T    ++  +P   ++  K++A    +    R
Sbjct: 244 AQLATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQALVERLSEALR 300


>gi|206578459|ref|YP_002239327.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|262043583|ref|ZP_06016694.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288936181|ref|YP_003440240.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290510764|ref|ZP_06550134.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206567517|gb|ACI09293.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|259039055|gb|EEW40215.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288890890|gb|ADC59208.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289777480|gb|EFD85478.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 301

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 119/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 3   DLNDFAWFVQVVDHGGFAAAGRALDQPKSKLSRRIAQLEERLGVRLIQRTTRQFAVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +  + E  Q  ++    +P G +RI   + L    +   L  F+  YP + 
Sbjct: 63  QTFYQHCKAMLIEAEAAQQAVETLRAEPRGSVRITCPVTLLHVHIGPMLARFMARYPGVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R +PI+ S L+ R L        A+P  +     P +
Sbjct: 123 LHLEATNRRVDVVGEGIDVAIRVRPRPIEDSDLVMRVLADRGHRLVASPDLISRLGRPQA 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     ++ G    K    +                 +     L++ +  + G G+ 
Sbjct: 183 PSELSAWPGLSLG--ANKHQHKWQLTGPGGARAEVYFTPRMVTTDMLALREAAMAGVGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V+D   +  L  ++++       ++  +         ++A  +++  +
Sbjct: 241 QLPLLMVRDQLASGELEVVLDEWQPRREVIHAVFASRRGLLPSVRALVDYLSEE 294


>gi|78062042|ref|YP_371950.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969927|gb|ABB11306.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 316

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V   GSF  AA +L +SQ  ISR+++ LE ++  +L  R  R ++LTE
Sbjct: 1   MDKLQSMRSFVQVVNDGSFIRAATRLGISQMMISRRVNWLEEQLERRLLVRRTRSVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   S++  KL+  +  +   +  PSG LR+A ++ L    L   L+++   YP+
Sbjct: 61  FGKTYYTRVSDILAKLDEVEHAVSVPTQTPSGTLRVAVSVGLSLRHLSSCLRDYCDSYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +    +L ++ +D+  D  D  I     +  +SL+ R + +  + A A+P YL+   EP 
Sbjct: 121 VLPVPVLVDRPVDLVADGYDAGIVDLSSLSCTSLVARAVFSAPLIAVASPGYLQRRGEPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL +H  +      P+  +    L + D  +       +  N+   +MQ  + G GI
Sbjct: 181 HPAELAEHAYLAISG--PQRGKPELQLDSADGTVTITCNPAVVANNIDFLMQMVLSGMGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           AL+   +V+   +   L R+++D   P+ T    YP       K++ F + +  
Sbjct: 239 ALIQPALVQRELEQGTLKRVLQDHWAPAPTFGIVYPSRRHLPAKVRTFIDHLLA 292


>gi|168463948|ref|ZP_02697865.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633239|gb|EDX51653.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 303

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARHPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++ F +F+  +
Sbjct: 240 LLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRTFIDFLRSQ 293


>gi|188989706|ref|YP_001901716.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167731466|emb|CAP49641.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 329

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 130/295 (44%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L     + R GSFT AA +L +SQS++S  I GLE  +G++L  R  R +  TE G
Sbjct: 37  NFKDLLALIAIVREGSFTRAAAKLGVSQSALSHTIRGLEATLGLRLLTRTTRSVAPTEAG 96

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     L E    P+G +RI  T    + +L   L   L  YPDI+
Sbjct: 97  ERLIQTVAPRFAEIEEALSALSEMRDTPAGSVRITATDYAAREILWPKLAVLLRQYPDIK 156

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN   DI  D  D  +RL   ++   +  R    + M   A+P YL+    P + 
Sbjct: 157 VELVVDNGLTDIVADRYDLGVRLGDQVEKDMIAARIAPDMRMALIASPAYLERRPLPRTP 216

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H  I         +  +  L    R I       L  NS    +   + G GIA 
Sbjct: 217 QDLTAHLCINLRMTSAGGIYAWE-LEKDGREIAVRVEGQLTFNSIYEALDAALQGFGIAF 275

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + + + + +     L  +M+D       ++  YP    ++    AF N +    R
Sbjct: 276 VQEDLARPHIKAGRLRWVMKDWSPTWPGLHAFYPSRRHSSP---AF-NLVLEALR 326


>gi|157377188|ref|YP_001475788.1| LysR family substrate binding transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157319562|gb|ABV38660.1| substrate-binding transcriptional regulator, LysR family
           [Shewanella sediminis HAW-EB3]
          Length = 299

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 11/295 (3%)

Query: 1   MSFDWD--KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+ D +   +R F V+A+ GSFT AAE L  S+S +S+Q+S LE  +G+ L  R  R   
Sbjct: 1   MNSDLNLADIRAFTVIAKQGSFTQAAEVLGCSRSHLSKQLSQLERFLGVSLITRTTRAQR 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLL 117
           LTEQG +           ++       +++    G++ I      +G+ ++   + +F+ 
Sbjct: 61  LTEQGQQFFEQCQAALETIDGAVASTVDNARHLQGQININCVGGVIGEEIVTALVNDFIA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYPDI + L   ++ +D+ +D  D   R+ + ++ S ++ RKL++I     A+P YL+  
Sbjct: 121 LYPDISVNLDFSSQRVDLVVDEFDLVFRMGE-LEDSGIVARKLMSIENMTMASPQYLERR 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P   + L  H  IT           F   +  +  +        +  +  ++    + 
Sbjct: 180 GYPDHPKALKDHLCIT----GSIDHWLFEQESNPNNKVEVAIKGGFRCKNGRAMKASALA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+GI  LP         +  LV + E+        Y  Y +      +LKAF +F
Sbjct: 236 GNGIVRLPKLYCPQELASGELVSVFEEWRVADTPFYLLYHKDRFQPARLKAFVSF 290


>gi|254226497|ref|ZP_04920082.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125621003|gb|EAZ49352.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 315

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  
Sbjct: 8   QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +   Q E+++   + +G +R+  +   G   +   L+     YP++ +++
Sbjct: 68  YAQCRELLTIVTNAQSEMEDQRDEVAGLIRLGLSQSFGTLHVLPALERLRQQYPELNVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++        A+P YL     P     L
Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASPDYLLRYGSPTEPMAL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + +        +   W  + D      +++    V+   ++    V G GIA L 
Sbjct: 187 MEHNCLIYRS---WERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            Y+++D      L++++ +         Y  YP       K  A   FI  + 
Sbjct: 244 TYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRL 296


>gi|116251610|ref|YP_767448.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256258|emb|CAK07339.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 297

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 132/293 (45%), Gaps = 6/293 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR  +FT AA +L +SQS++S  +  LET +GI+L  R  R ++LT+ G +
Sbjct: 7   NDLMAFLAVAREKNFTRAAAKLGVSQSALSHTVRQLETRLGIRLLTRTTRAVSLTDAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +     + +++     L E   +P+G +RI  +      ++   L+ FL   PDI+++
Sbjct: 67  LFQGVGPHFDEIDAQLDALTELRDRPAGNIRITASDHAINWIIWPKLQRFLPNKPDIKVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI +N   DI  +  D  +R+ + +    +  R           AP Y +    P   Q+
Sbjct: 127 LIRENGLSDIVTERFDGGVRMGEQVAKDMISTRIGPDFPFAVVGAPSYFEGKGVPEHPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +HN I   + +P     + W    +      R+   L  N+    ++  + G G+A +
Sbjct: 187 LVRHNCI--NERLPTYGGFWAWEFEDNGKEIRIRVEGQLAFNNSYQSVEAALDGLGLAYV 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P+ +   +     L R++E         +  YP   +++    A  + +  +A
Sbjct: 245 PEDVALPHIAEGRLRRVLEAFSPYWDGYHLYYPSRRQSSPAFVALVDALRHRA 297


>gi|238796564|ref|ZP_04640071.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           mollaretii ATCC 43969]
 gi|238719542|gb|EEQ11351.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           mollaretii ATCC 43969]
          Length = 298

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 120/287 (41%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++ ++R ++ +E   G++L +R  R L+LT  G     
Sbjct: 8   EVFVAIVERGSMIAAAEALEMSRAMVTRYLAQMEQWAGVRLLHRTTRKLSLTHAGEATLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +       + S +  G LRI+ +  LGQ+ L   + ++L  +P + + L +
Sbjct: 68  RCRRMLEFAQDMDAVAGQESNELRGLLRISCSQSLGQSALVIAVTDYLRQHPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L   H    A+P YL     P    +L  
Sbjct: 128 NNRAVNLVEERIDLALRITNEL-DPNLIARPLAICHSVVCASPAYLAAKGTPKGPPDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                            L  N  + ++   + G+GIAL P Y 
Sbjct: 187 HNCLTYSYFGKSLWH----FDQQGVKSSVAVGGNLSANESVVLLSGALEGAGIALQPSYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                    L++++ D    +  +Y  Y    +    L+   +F+  
Sbjct: 243 AAPYIARGELIKLLPDYQPQAMGIYGIYTSRRQMPATLRTMLDFLVA 289


>gi|325522137|gb|EGD00794.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 321

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 133/299 (44%), Gaps = 6/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  ++VF  +A +G+FT   ++L ++ + +SR I+ LE  +GI+L  R  R + LT
Sbjct: 1   MDL-FQSMQVFVTLADAGTFTETGKRLDITTAQVSRMIATLENHLGIRLLNRTTRSMCLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   ++ ++ E + + + P G+LR   +  +  + +   +  F   YP
Sbjct: 60  EAGERYLARARDITLAVDASEREARGAQLHPYGRLRAHCSASIASHFVIPLVARFQARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L L  +  D+     D A+     + SS  +   +  I     AAP Y+     P
Sbjct: 120 DVSVDLTLAPQVPDLIRGSYDVAVIALPSLPSSDQVAIDVGRIDSVLCAAPAYVARHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++ L +H  +    + P  +E    L              +  +   S+      G+G
Sbjct: 180 DTLRALARHRCVQL--VAPAYLEREWVLTNGLETETLAFEPAMTADVAASLAVAVREGAG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I LLP ++V D+     L+R++ D  +    V+  +P       K +A+ +F+    RD
Sbjct: 238 IGLLPRFVVDDDLRSGALLRVLPDYRSEEIGVFLVHPSRRHVDAKTRAWVDFMKTALRD 296


>gi|270263276|ref|ZP_06191546.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042964|gb|EFA16058.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 303

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 128/291 (43%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVECGSFTAAARQLDMSVSSISQTVSKLENELQVKLLNRSTRRIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  ++     +L   +  P+G LRI ++  + QN+L     + L  YP + +
Sbjct: 64  IYYQGCRRMLQEVSEVHEQLYAFNNTPTGTLRIGSSSTMAQNVLATMTADMLKEYPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR    +Q SSL  ++L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRTGA-LQDSSLFSKRLGSMPMVICAAKSYLSQHGTPQKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMVNFSWLEYSVRPDS---EFELIAPEGITTRISPQGRFVTNDSQTMIRWLKAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGEIEILFKSYHSDPRPVYALYTEKDKLPLKVQVCIDYLTE 290


>gi|207743736|ref|YP_002260128.1| hypothetical protein RSIPO_01917 [Ralstonia solanacearum IPO1609]
 gi|206595135|emb|CAQ62062.1| hypothetical protein RSIPO_01917 [Ralstonia solanacearum IPO1609]
          Length = 328

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 135/294 (45%), Gaps = 9/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + VF     +G F  AAE+L LS+S++ + I+ LET +G++LF+R  R   LTE G  
Sbjct: 2   DGVAVFVEAVEAGGFARAAERLALSRSAVGKSIARLETRLGVRLFHRTTRTQNLTEDGQI 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +        +L   +  L+    + +G+LR+   +  G+  +   L +F   +P ++++
Sbjct: 62  YYERCLRAIEELRVAESLLESGKQEVAGRLRMTMPVLFGRYCIAPILLDFAREHPKLELE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   ++ +D+  +  D  IR     +++ L  R L T      AAP YLK   EP +I+ 
Sbjct: 122 LSFSDRPVDMIAEGFDLGIRSGALGEATGLCARPLATQPKVLCAAPDYLKARGEPDTIET 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L  H+++       +    + WL    D  + E R+ S L+ +         V G GIA 
Sbjct: 182 LATHDVLIH----WRTGHPYPWLLPGADGRLTEVRLASRLRFDDLEVTADAAVAGMGIAW 237

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP ++V+D      LV + E     S   +  +P       +++   + +  K 
Sbjct: 238 LPHWLVRDRIQAGALVALWEKRPAASMDSHAIWPATDYMPLRVRLAIDTLVEKL 291


>gi|26990205|ref|NP_745630.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985148|gb|AAN69094.1|AE016543_3 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 310

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 125/297 (42%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++
Sbjct: 1   MDM-LHAMRTFTRVVECGSFAAAANALDISAAQVSRIVAELENQLQTRLLHRTTRRLRMS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++    E    E + + + P G LR+     +G  LL   +  + +LYP
Sbjct: 60  EAGERFLERARQIMLLTEEAVGEARGAHLTPRGHLRLHCPHGMGL-LLMPLVAGYNMLYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L L  ++ D   +  D  I +   +  S LI   L  I     AAP YL     P
Sbjct: 119 EVVIELTLSQRNPDPLAEGHDVVITVDGALPDSQLIAVPLGNIFSIPCAAPGYLDTHGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  +      P    D+ +   VD+ +  P  S    N   +++    LG G
Sbjct: 179 ERPEDLHGHRCLRMA--YPMYEGDWVFPQGVDQCVIAPNDS-FSTNVADAMLVASELGMG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I LLP Y   +      L R++         +Y  YP       K++ + +++  + 
Sbjct: 236 IGLLPFYTASEAIGQGRLCRLLAPYRLRESALYAMYPSRHYLDAKVRTWIDYLKEQL 292


>gi|254248311|ref|ZP_04941631.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124874812|gb|EAY64802.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 304

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 130/293 (44%), Gaps = 11/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G +  
Sbjct: 10  LHVFMTVATAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R T   Y ++   + EL+++  +P+G LR+         ++   L  F   YP +++++ 
Sbjct: 70  RQTEPAYRQVMQARDELKDARSEPNGLLRVTALPLARLLVIAPVLATFRERYPKVRLEIR 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            DN+ +DI+ D  D  IRL   +Q   +  R    +     A+P YL     P SI  L 
Sbjct: 130 YDNELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPAYLARHGTPESIAALA 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I F       +  +  L    R +          N   +++    +G GIA     
Sbjct: 190 QHACIRFRFSESGRLHKW-LLQDGRRDVDLDPDGVFVTNDDDAVIDAARVGVGIAFA--- 245

Query: 248 IVKD-------NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            V++       +  LV ++         ++  Y        KL+AF + +  +
Sbjct: 246 FVRERIEQDLRDGTLVEVLPGACRTLPPMWLYYVNRKHVPAKLRAFIDVLRER 298


>gi|259416519|ref|ZP_05740439.1| LysR substrate binding domain protein [Silicibacter sp. TrichCH4B]
 gi|259347958|gb|EEW59735.1| LysR substrate binding domain protein [Silicibacter sp. TrichCH4B]
          Length = 304

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 133/295 (45%), Gaps = 8/295 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR GSFT AA+++++S S++S+ I  LE  + I+L  R  R ++LTE GSKL
Sbjct: 8   ALAAFAQVARDGSFTRAADRMNISTSALSQSIRSLENRLAIRLLNRSTRSISLTEAGSKL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        +E       ++  +P G +RI  +      LL+ +L EF  L PD+++ +
Sbjct: 68  LKQIEPALSMIENGMASALDADNRPEGLVRINASRVAANYLLEPHLGEFHQLCPDVELDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D+   DI  +  D  IRLR  +  S +       I M   A P Y      P +  +L
Sbjct: 128 FIDDSFEDIVREGFDAGIRLRDGVVDSMVAIPISPPISMAVVATPTYFAANPPPQTPDDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +HN I F       +  + +   T    I          N    ++   + G G+ +  
Sbjct: 188 TRHNCIGFRHGKNIQISPWEFDNPTTGAEILFEPKGSFATNGDELMLSAALQGVGLVMHF 247

Query: 246 DYIVKD---NPNLVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           D++V+    +  LVR+++    P   F +Y   P       +L+A  +F+  K R
Sbjct: 248 DFVVQKQLTSGELVRVLKPWCKPFDGFDIYL--PSREHMPTRLRALIDFLTAKRR 300


>gi|239813099|ref|YP_002942009.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239799676|gb|ACS16743.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 303

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 128/291 (43%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F + A +G FT AA    ++ +++SR IS LE  +G++LF R  R + LT+ G    
Sbjct: 13  IELFCLAAETGGFTSAALAAGVTPAAVSRSISRLEKRLGLRLFVRTTRSVRLTDAGRSYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L   + E+      PSG LRI+     G + +   L  F   +PDI++ + 
Sbjct: 73  AQCRQALAQLAEAEREVMGQQALPSGMLRISVPTTYGHHRILPLLPAFRERFPDIRLHVH 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N++ID   +  D A+R+R     S+LI R L    +   A   YL+    P ++ +L 
Sbjct: 133 LSNRNIDFVEEGYDMAVRVRAQ-PDSTLIARHLEDADLVVVATRKYLRRAGTPRTLDDLA 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI--MQYCVLGSGIALLP 245
            H  I F   +P      +WL   +    E         S   +  +      +G+    
Sbjct: 192 AHECIQFE--LPSSGRRISWLFKENGKDREVFADGAYSCSDDVLGGVTLAKSSAGLFQTY 249

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++V+    + +LV +++     S      YP+      +++ F +F+  +
Sbjct: 250 RFVVEKELADGSLVEVLKPFAGCSRPYTLLYPDGRHVPLRMRVFIDFLMAQ 300


>gi|116250064|ref|YP_765902.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254712|emb|CAK05786.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 297

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 122/296 (41%), Gaps = 10/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + +F  A E+L +++S++S+ +  LE  VG+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRVGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G            +++     ++E   +PSG LRI  +      L    L  F+   P
Sbjct: 61  EAGEVFFDAVRPSVRQVKDAMQTVREMQARPSGLLRITVSSIAENFLSGTLLAGFMEACP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ + + + + DI     D  +RL + I+   +           A A+  YL+    P
Sbjct: 121 DIKLDITITDDEFDIVEAGFDAGVRLGEVIEQDMIAISVSEEQRQCAAASRSYLERRGHP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL KH  I +          +      DR         +  N    +++    G+G
Sbjct: 181 RHPGELQKHACIGWRPRPDTAPYRWE-FTENDRDFDVSVDPTVTTNDMGMMIRMACAGAG 239

Query: 241 IALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I      +V+      +   LV ++ED   P    Y  YP   +   KL+A  +++
Sbjct: 240 ITFG---MVETFQPYIERGELVPLLEDFCPPFAGFYLYYPRRQRQPLKLRALVDYV 292


>gi|134297146|ref|YP_001120881.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134140303|gb|ABO56046.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 319

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   +PD+ + + 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMQAVTDYAGRFPDVTVDMT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +D+  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P +I +L
Sbjct: 127 LSDRVVDLIEEGYDVAVRAAPNGLKSSSLVARQIATAHILLVASPDYLERRGTPQTIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +                A   R         L VN    +    + G+GIALL  
Sbjct: 187 AYHNYLRRESSASALDALVIDAAAASRVNLN---GNLIVNHLEGLRAAVLAGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIESGRLVPLLLDAVPPHEAPIYAVYASRRHVSAKVRSFVDFLAAR 294


>gi|227819505|ref|YP_002823476.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227338504|gb|ACP22723.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
          Length = 315

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 130/300 (43%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +RVF  V   G+ + A     ++ +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNVRVFVRVVELGTLSAAGRDQRVTPAVASNRIKELERHMGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   +   +  + + S  P G +RI   + +G+ L+   + EF   YP
Sbjct: 60  EHGRVFYDGAVKILEAVNEAESAIADLSRNPKGAVRITAPLGIGRRLIASGVPEFHDRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L ++++DI  +  D A RL   ++ S+L  R ++        AP Y      P
Sbjct: 120 DIEVRLRLSDRNVDILSEGIDVAFRLG-ILEDSNLRMRGIMNCDRVLCGAPAYFDKRGVP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +  EL  D H+ +      P   E +  L T +             +    + Q+ + G
Sbjct: 179 GTPDELITDHHDCLLL--RYPGSKEYYWTLQTPEGARKFEVGGPYDSDDGDVLTQWALDG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P + VK   D   LV I+ +       +   YP       K++   +F+  + +
Sbjct: 237 RGIINKPLFEVKQYIDEGTLVPILRETPPLGAQLAAIYPHKRFQDPKVRLIIDFMAERCQ 296


>gi|170737686|ref|YP_001778946.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819874|gb|ACA94456.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 301

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 129/297 (43%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDRLDGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +  GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALAELEAAEADLDCGRHEARGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDLVEEGIDLAVRIGPLADSTSLAVRRLGTQYGSLGAAPSYLARHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H  I +       ++ +   A     +       L  +   +I      G G
Sbjct: 181 QSLDDLKNHRTIAYSR--SGVVQPWYLRAPDGSSVHIDMPHQLSFDDVQAIAAAGASGFG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP +++        +V +++        ++  +P+      K +   + +    
Sbjct: 239 IAWLPSWLLDHYVKRGEMVVVLDRCFVCEGDIHAIWPKTRYLPRKTRCVIDALVEAV 295


>gi|114766628|ref|ZP_01445580.1| transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114541168|gb|EAU44221.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           HTCC2601]
          Length = 314

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 132/298 (44%), Gaps = 10/298 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D LR F   A +GSFT AA++L +S    S+ ++ LE  +G++L  R  R + +T 
Sbjct: 17  MDLIDGLRAFVATAETGSFTAAADRLAISNRLTSKYVAELEARLGVRLLSRTTRRVGVTA 76

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +   L+    E+ E     +G LRI+  +  G+  +QG L  F   + D
Sbjct: 77  SGEALLARAPALLDDLDEMLAEVTEDGRGFTGTLRISAPVTFGEKYVQGMLARFAAPHAD 136

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L +  +D++ +  D A R+ +   +S L +R+L  +     A+P YL     P 
Sbjct: 137 LVVDLRLTDAYVDLASEGIDLAFRVGEGAVTS-LKRRRLGALRSCVVASPDYLSRHGRPE 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L  H  I   +      E  +W  T D      ++ S  +VNS        V G G
Sbjct: 196 RPDDLVAHACIVDTNRS----EPAHWAFTCDSVETAVQVPSRFRVNSAQVARDLAVAGHG 251

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA  P +++ D+     L  ++ D  +P   +   + E      K+++  +F    AR
Sbjct: 252 IAFCPVFVLGDDLETGRLEPLLPDYDSPRRAISAVWLEGRTLPRKVRSLIDFAVEDAR 309


>gi|149908411|ref|ZP_01897074.1| transcriptional regulator [Moritella sp. PE36]
 gi|149808574|gb|EDM68509.1| transcriptional regulator [Moritella sp. PE36]
          Length = 309

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 137/303 (45%), Gaps = 16/303 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +R F  +A+ GSFT AAE L  S++ +SRQ++ LE ++G++L  R  R   LT  G
Sbjct: 6   SLADIRAFVTIAQQGSFTKAAEVLQSSRAHVSRQLAQLEQQLGVQLIVRTTRAQRLTPVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDI 122
            +  +        +    I  ++ + +  G + I      +G+++L   + EF L +PDI
Sbjct: 66  EQFFQQCLTSLQTINQAVIAAKDDTEQLQGSICINCVGGVIGEDILANIISEFNLQHPDI 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L   +  +D+  +  D  +R+ + ++ S L+ RKL  I +   A+P YL        
Sbjct: 126 EVELDFSSPRVDLIAEAFDLVVRMGE-LEDSGLVARKLTDIKVQVLASPDYLAKHAAITH 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGS 239
            ++L++HN +T    I +       +   + PI +  I+        S  +++     G+
Sbjct: 185 PKDLEQHNCLT--GSIKRWRFHQKSVQHNNAPIHDIEINVKGNFSCKSGRALINAAKHGN 242

Query: 240 GIALLPDYIVKDNPN---LVRIM------EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP+   ++  N   L   +      E   +P   ++  Y        +LK   +FI
Sbjct: 243 GIVRLPELYCENEINANTLAPALISEPDEEQWHSPDVPLFLLYHRNRYQPARLKVLIDFI 302

Query: 291 FLK 293
             +
Sbjct: 303 CQR 305


>gi|330992725|ref|ZP_08316669.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter
           sp. SXCC-1]
 gi|329760203|gb|EGG76703.1| Putative HTH-type transcriptional regulator yhjC [Gluconacetobacter
           sp. SXCC-1]
          Length = 325

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 134/296 (45%), Gaps = 9/296 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           S D  D +R+F  +    SFT AAE ++L +S+ +  I  LE  +G++L +R  R ++ T
Sbjct: 27  SMDRLDVMRLFMRIVDRESFTQAAEDMNLPRSTATDVIKALEARLGVRLLHRTTRQVSPT 86

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   +R    +  ++E  +      +V+P G LRI     L ++ L   L  F   YP
Sbjct: 87  PEGETYYRRCRHIVAEIEDAEAAF--GTVRPKGTLRIDVHGTLARHFLLPALPAFFAAYP 144

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ +   ++ +D   +  DC +R+ + ++ S ++ R+L  +     AAP YL+    P
Sbjct: 145 DIELHMSEGDRLVDPVREGMDCVLRVGE-LKDSGMVARQLGMLEEVTLAAPAYLEAHGVP 203

Query: 181 LSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                L + H ++ F   +   +    ++    +      +  + VN+  S +     G 
Sbjct: 204 THPDALAEGHFMVGFQSSLRGRILPLEFVIDGKQRDMVLPLH-MAVNAAESYVSAARAGL 262

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  +P Y    +     LV I+      S  V   YP   + + +++ F +++  
Sbjct: 263 GIIQIPRYHATHDLMAGTLVDILAAFPPTSSPVALLYPHNRQMSPRVRLFIDWVAE 318


>gi|261391824|emb|CAX49281.1| putative HTH-type transcriptional regulator [Neisseria meningitidis
           8013]
 gi|308388509|gb|ADO30829.1| probable LysR-family transcriptional regulator [Neisseria
           meningitidis alpha710]
 gi|325137116|gb|EGC59712.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M0579]
 gi|325141515|gb|EGC63985.1| transcriptional regulator, LysR family [Neisseria meningitidis
           961-5945]
          Length = 303

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 137/289 (47%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA  L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAAGALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +       + ++      +  +         ++ ++ L + +    G+ I   P +
Sbjct: 186 GLPAVLPTYTNQQKLDLTR--KSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPLW 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + +     LVR++     P+  +   Y +    + K+++F +F+  K
Sbjct: 244 AAEHDLRCGTLVRLLPGYAVPTDRLNAVYADRAFLSAKVRSFIDFLNEK 292


>gi|253690380|ref|YP_003019570.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756958|gb|ACT15034.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 295

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF   +  GSF  A E L +S   +++Q++ LE  +G++L  R  R  +LT+
Sbjct: 1   MDRLTSMSVFVKASELGSFAAAGEALGISPQMVAKQVAWLEARLGVRLLNRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     V  + E      +E  V PSG +++   +  G +LL   +  +L  YPD
Sbjct: 61  IGLRYYERCKVVLAEAEDADAVAREMQVTPSGIIQVNAPVTWGSHLLAPFITHYLARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            QI L L+++ +D   D  +  IR+ + +  SS++   L    + A A+P YL     P 
Sbjct: 121 TQIALTLNDRMVDPIEDGFEVIIRIGE-LADSSMVAWPLQPYSLIACASPDYLAREGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
           +   L +H  + +G  +        W+   +    E R    L  N + +++   + G G
Sbjct: 180 APASLARHACLIYG--VRTAATSCRWVFQKEGKSEEVRPQGRLFANDWNALLHAAIEGYG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I L P+ +++   D   LV+++ D   P+  V+   P   ++  K+K F + +  
Sbjct: 238 ITLGPEAVLRKEIDRGRLVQVLSDYDGPARPVHVMVPMGRRSAVKIKTFVDAVRA 292


>gi|289624171|ref|ZP_06457125.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651658|ref|ZP_06483001.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330869351|gb|EGH04060.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 306

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 9/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA +GSFT AA++L LS S++S+ ++ LE+ +G++LF R  R L LTE+G+
Sbjct: 11  LKGIETFVAVANAGSFTAAADRLSLSNSAVSKSVARLESRLGMRLFERTTRSLALTEEGA 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H V + +   LE  +  L     +P+G+LRI      G+      +  F   +  ++ 
Sbjct: 71  AYHAVCTRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRP 130

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   ++ +DI  +  D A+R+   P+  + +  R L T  +   AAP YL+    P + 
Sbjct: 131 RITFTDRFVDILEEGIDLAVRIGGPPVWPAGVAHRYLGTERVIFCAAPAYLERHGIPTTF 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           ++L  H  I FG           WL   D+   E R   + L + +  + +       GI
Sbjct: 191 EDLASHACILFGRGDGSTSP---WLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGI 247

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L  +++++      LV I+  + T    ++  +P   ++  K++A    +    R
Sbjct: 248 AQLATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQALVERLSEALR 304


>gi|295699231|ref|YP_003607124.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438444|gb|ADG17613.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 318

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 135/293 (46%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L++F  +AR GSF  A+ ++ LS S +S++I+ LE  +G+KLF R  R +++T  G 
Sbjct: 15  LRDLQLFCHIARRGSFVAASTEMGLSPSHVSKRIAMLEAGLGVKLFQRTTRRVSVTSDGE 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   ++   ++       +   + SG LRI+T++ LG+  +   L      +P+++I
Sbjct: 75  AALQWAQKILDDVQGMADAFADRRTELSGVLRISTSLRLGRKHVSPILAMLRERHPNLEI 134

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++  D+  +  D  +R+ + +Q   LI  K+V       A+P YL+    P+ + 
Sbjct: 135 WLELLDRRADVVGENFDIDVRVGE-VQEPHLIAHKMVESARILCASPAYLERHGAPVELN 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + F     +       L+             +  N    ++Q+   G GI ++
Sbjct: 194 DLTGHDCLLFRGRDDRFGVWR--LSGPHGEKSVKVTGTVASNLSDIVVQWAKQGYGIVMV 251

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             + V ++     LVR++ D    S  V+      L ++ +++    F+  + 
Sbjct: 252 SIWDVAESLRAGELVRVLPDYQQ-SADVWAVTAARLSSSARIQVCIEFLREQL 303


>gi|241764188|ref|ZP_04762222.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241366465|gb|EER60969.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 297

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 124/295 (42%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  +  F  VAR  SFT AA QL +SQS++S  I  LE  +G++L  R  R ++ TE G
Sbjct: 5   NFRDILAFLAVARERSFTRAAAQLGVSQSALSHTIRALEARLGLRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  +  +    +  +E   KP+G +RI  +      +L   L +    YPD++
Sbjct: 65  ERLIQRVAPRFEAITDELVAFEELRDKPAGTVRITASDFAANTILWPKLSKLQQKYPDVK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ ++    DI  +  D  +R    I       R    I M    AP YL+    P + 
Sbjct: 125 IEVAIEPGLTDIVAERFDAGVRFGDQISKDMTAVRISPDIRMVIVGAPSYLEGHPAPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I     +   +  +  L   +R +          N     ++  + G G+A 
Sbjct: 185 SDLTDHECINMRFSVRGGVYAWE-LKKGERNLQVRVDGSWTFNCIYPAVEAALAGFGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +P+ + + +     L  +++D       ++  +    +++  L      I  K R
Sbjct: 244 MPEELARPHMKSGQLRAVLKDWCPTFPGLHIYFASRRQSSPALSL----IVEKLR 294


>gi|307727625|ref|YP_003910838.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588150|gb|ADN61547.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 309

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 122/294 (41%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F + A  GS T AAE+L LS ++ SR +S LE  +G++L  R  R L LT+
Sbjct: 1   MDRFAQVEFFVLTADLGSMTRAAERLGLSNAAASRMLSKLEDRLGVRLVERTTRRLWLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + HR  S +  +         E S +P G LR+  ++      +   L  F    P+
Sbjct: 61  AGREYHRRCSALIAEAADADAAAAELSTRPRGVLRVTCSVSFALLHIAPWLPRFRERNPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   N+  +      D A+R R+    S ++ +KL        A+P Y+     P 
Sbjct: 121 LRVHIEAANRYPNFIEAGIDVAVRTREYESDSGIMVQKLAQTRRVFAASPAYVARRGWPD 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L  H+L+ +       +     L   D           + N    I      G GI
Sbjct: 181 TPEALASHDLLVYALATDPYVLH---LRKGDESREVRIAPVFESNEGQVICAAARAGMGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + P YIV+D+     LV ++ED   P   +   Y        K++ F   +  
Sbjct: 238 LIQPLYIVRDDIVAGRLVPLLEDWQLPPLIINLAYQSRRHQPAKIRVFAQALRE 291


>gi|330967181|gb|EGH67441.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 297

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 135/291 (46%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+ F V+ R GSFT AA QL +SQS++S  +  LE  +G++L  R  R ++ TE G
Sbjct: 5   NLNDLQAFVVITREGSFTRAAAQLGVSQSALSHTMRALEARLGVRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++  +  + ++E     + E    P+G +RI  +     N+L   L + L  YPDI+
Sbjct: 65  QRLYQSMAPRFDEIELELAAVSEFRNTPAGNVRIQASEHAANNILWPKLLKVLPDYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    DI     D  +RL   +    +      ++ +    +P Y K  + P   
Sbjct: 125 VEITVDYALSDIVAQRYDAGVRLGDQVAKDMIAVPIGPSLRIAVVGSPEYFKQRQIPREP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  HN I     +P       W    D    + R+      NS + I++  V G G+ 
Sbjct: 185 RDLAAHNCINL--RLPTHGSLMQWDFEKDGHELKARVEGQWTFNSSVPILRAAVAGCGLG 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+ +V     + +L+R++ED   P    +  YP   +++       + +
Sbjct: 243 FLPEDMVAKELADGSLLRVLEDWCQPFAGYHIYYPNRREHSSAFGVVVDAL 293


>gi|311105835|ref|YP_003978688.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760524|gb|ADP15973.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           80 [Achromobacter xylosoxidans A8]
          Length = 302

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 128/290 (44%), Gaps = 5/290 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F   A +GSFT AA++LHL+ S++ + ++ LE  +  +LF R  R L LT+ GS
Sbjct: 7   LKGIEAFVTTADAGSFTAAADRLHLTASAVGKSVARLEARLRTRLFERSTRRLALTDAGS 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    V  +L+  +  L     +P G+LR+      G+ +    L +F   +P ++ 
Sbjct: 67  AYYRTCVRVLAELQDAEAVLAAQRQEPVGRLRVDLPATFGRRVALPLLLQFAQRHPQLRP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +   ++ +D++    D A+R+  P Q    L  R L +  +   A+P YL     PL+ 
Sbjct: 127 CVSFTDRFVDLADVGIDVAVRIGGPPQWAPGLGHRYLGSERVIFCASPQYLARRGTPLTA 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ + +G    +    +                 + ++S  + +     G GIA 
Sbjct: 187 DDLAQHDAVAYGRADGEP-PVWRIAQGAGPASLRSVDGVMTLDSAEAQVDAVAAGFGIAQ 245

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  ++  D   +  +V ++  +      +Y  +P + +   K+ A    +
Sbjct: 246 LATWLAADALRDGRVVEVLPQLAAEGLPLYLVWPLSKQLLPKVDAVVEML 295


>gi|254502867|ref|ZP_05115018.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438938|gb|EEE45617.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 302

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 132/295 (44%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F + A   + + A + L L+ S  S +++ LE  +G  L +R  R ++L+++
Sbjct: 1   MDTECLRLFVLAAEKSNISAAGKVLGLAPSIASARLAKLERSLGSDLLHRSTRKVSLSQE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++      E+  + +  +  L     + +G LR        Q  +   L EF+  +P I
Sbjct: 61  GAEFLPYAREILAQEDAARAALGHGKPEATGTLRFTAPSTFAQLYIVPMLPEFMERHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L +   D+     D A+R    ++ +SL  RKL        A+P YL     P +
Sbjct: 121 RLDLRLSDVKYDLIDGSFDLALR-NSAMEDTSLKGRKLADDTRILCASPGYLAAHGVPKA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +H LI F     K +        V    G    + L +++ LS     + G+GI+
Sbjct: 180 PDELQQHQLIGFAARTAKPLMSPTGPEGVFDTRGH--NARLTMDNGLSQKLATLAGAGIS 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK 293
               + V        L+R++ D I    + ++  YP++   T K++ F +F+  K
Sbjct: 238 ANSLWSVHQELKIGTLIRVLPDHIVDDPSMLWLIYPKSNVLTAKVRVFIDFLLEK 292


>gi|168799778|ref|ZP_02824785.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|195937785|ref|ZP_03083167.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|189377865|gb|EDU96281.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
          Length = 307

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 142/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++ +++S+ +  LE  +  KL YR  R +
Sbjct: 1   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITLAALSQNLKSLEERLNTKLIYRTTRNI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 61  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 121 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 179

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 180 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSKVVGGNEEFEIEVSGKYISNDDESMIRM 239

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 240 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 299

Query: 292 LK 293
            K
Sbjct: 300 EK 301


>gi|15676212|ref|NP_273344.1| putative transcriptional regulator [Neisseria meningitidis MC58]
 gi|7225514|gb|AAF40741.1| putative transcriptional regulator [Neisseria meningitidis MC58]
 gi|316985229|gb|EFV64181.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Neisseria meningitidis H44/76]
 gi|325135094|gb|EGC57722.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M13399]
 gi|325141126|gb|EGC63629.1| transcriptional regulator, LysR family [Neisseria meningitidis
           CU385]
 gi|325199493|gb|ADY94948.1| transcriptional regulator, LysR family [Neisseria meningitidis
           H44/76]
          Length = 303

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 138/289 (47%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +       + ++      +  +         ++ ++ L + +    G+ I   P +
Sbjct: 186 GLPAVLPTYTNQQKLDLTR--KSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPLW 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + +     LVR++     P+  +   Y +    + K+++F +F+  K
Sbjct: 244 AAEHDLRCGTLVRLLPGYAVPTDRLNAVYADRAFLSAKVRSFIDFLNEK 292


>gi|238794778|ref|ZP_04638380.1| LysR-family regulatory protein [Yersinia intermedia ATCC 29909]
 gi|238725858|gb|EEQ17410.1| LysR-family regulatory protein [Yersinia intermedia ATCC 29909]
          Length = 308

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 122/294 (41%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T 
Sbjct: 1   MDQIQAMRIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  ++   ++    E          ++P GK+RI     L +N++   L +F   YP 
Sbjct: 61  EGTLYYQRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALNDFYQRYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L  ++  ID+  +  DC +R   P     L  R +        A+P YL     P 
Sbjct: 121 ITLMLGANDSTIDLMREGVDCVLRAWLP-HDEQLASRNIGLQPQITCASPAYLAKQGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H  + +   I        ++    +         L V+   + +   V G G+
Sbjct: 180 SLDDLAGHQAVGYFSQINSRDYPLEFVYQ-SKVENRTLPGILSVSGADAYIAAGVAGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P   ++       L+ ++     P+  ++  +P       +++   +++  
Sbjct: 239 IQAPTSGIQSQLAQGELIEVLPHCPPPAMPLFIMFPAGRFLAPRVRVLIDWLIE 292


>gi|152971520|ref|YP_001336629.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956369|gb|ABR78399.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 302

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 5/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  SG+F  AA  LH+++S++ + I+ LE  +G+ LF R  R   LT
Sbjct: 1   MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G + +R   E   ++   +  LQ    +  G+LR++  +  GQ  +   L      YP
Sbjct: 61  EEGEQFYRQCREALERIREAEETLQRGKDEVQGRLRVSLPVLFGQRCVAPLLFRLSQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +++  +  D A+R+     + SL  R L    M   AA  YL+    P
Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGSLADTGSLRARALGEHGMVLCAAAEYLRQQPAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I  L++H  + +  L    ++ +         +     + L  + + +I      G G
Sbjct: 181 QTIAGLNEHRTLGY--LHNGQLQKWQLYDPQQGEVRFSPQTWLIQDDFAAIAAAVQQGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA LPD++V     +  L +++       F ++  +PE      K +A  + +  
Sbjct: 239 IAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEGPWLPQKTRAAIDALRE 293


>gi|33592370|ref|NP_880014.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33572015|emb|CAE41538.1| probable LysR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332381786|gb|AEE66633.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 303

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 127/295 (43%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  GS + AA  L +S++ +SR ++ LE  VG++L +R  R L+LT 
Sbjct: 1   MDRLKAMQVFVEVADRGSLSAAAMHLGMSRAMVSRYLAELEAWVGVRLLHRTTRRLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS+       +   +   +  +     +P G LR+   +  G   L   + EF+  +P 
Sbjct: 61  AGSETLPRCRRMLEMVGDMREAVAAPDAEPRGLLRVTAAMSFGGAQLAEAVAEFVRRHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             I L+L ++ +++  +  D A+R+   +   +LI R+L         AP YL+    P 
Sbjct: 121 ASIDLLLVDRAVNLVEERVDLAVRITNDL-DPNLIGRRLADCRSVVCVAPQYLQQHGAPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  HN +T                    P+  P    +  N    +M+  + G+GI
Sbjct: 180 RAEDLSLHNCLTHSYFGRSLWR----FERAGEPVEVPVGGNITANETDVLMRAALAGAGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +LP Y+        +L  ++ D   P   ++  Y    +    L+   +F+  +
Sbjct: 236 VMLPTYLAAGQIAAGSLRLLLPDCAPPVLGIHGVYVSRKQMPLILRTMLDFLAER 290


>gi|299065234|emb|CBJ36400.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 303

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 124/295 (42%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   GS   AA    ++   I R+I+ LE  +G+KL +R  R + +TE
Sbjct: 1   MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVKLLHRSTRRIAVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG+       +   +L+  ++ + E   K +G L ++     G+  +  +   FL   PD
Sbjct: 61  QGAVFMEQCKKALSELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPAFLRANPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++   L ++ +D+  +  D  IR+   I   + +  +L +        P Y      P 
Sbjct: 121 VRLSFNLTDRVVDLVREGYDLGIRIGGAI-DPNFVAIRLASNKRVVCGTPEYFARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           ++ +L +HN + F     +  +   W    +  +   R+S  L  N    + ++     G
Sbjct: 180 TLDDLARHNCLAFNL---QGGQQRGWYFQHNGRMVTVRVSGNLDCNDGELLHRWMGESLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     + ++   ++  L+ +++D   P + +   YP+      K++ F   +  
Sbjct: 237 LGWRSTWEIQPELESGALMTVLDDYALPDYDILAVYPQQRPVPAKIRFFIEHLKA 291


>gi|238893013|ref|YP_002917747.1| putative HTH-type transcriptional regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330009332|ref|ZP_08306509.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|1708874|sp|P52689|LTRA_KLEPN RecName: Full=Probable HTH-type transcriptional regulator ltrA
 gi|924993|gb|AAC44735.1| transcriptional regulator LtrA [Klebsiella pneumoniae]
 gi|238545329|dbj|BAH61680.1| probable HTH-type transcriptional regulator [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|238774016|dbj|BAH66513.1| probable HTH-type transcriptional regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|328534830|gb|EGF61375.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 309

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 122/299 (40%), Gaps = 11/299 (3%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    L +F  +   GSF+  A Q  ++ S++SR +S LE E+G KL  R  R L L
Sbjct: 1   MNLNLLPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           ++ G  +++   ++                   GKL ++    +G+ ++   +  F   Y
Sbjct: 61  SDAGETIYQHAQQMLEAARQAMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L L+++ +D   D  D A+R+     S  L  + L+ I     A   YL+    
Sbjct: 121 PQVDVCLRLEDRPLDFIDDGIDLALRITD-TPSPGLHGKPLMPIRHVICATEAYLQQHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + Q+L  H+ I+ G+        F       +            N     +       
Sbjct: 180 PYTPQDLRAHSCISLGETPADARWKFR---REGKTETVQTYGRYAANHTAVRLDAVRQHL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP +  ++   N ++V+++ +     + S  ++  +        +++A  +++  
Sbjct: 237 GIGSLPLFTAREALANGDIVQVLPEWEFISSYSGDLWLLWAGDKHMPARMRAMIDYLSE 295


>gi|325168909|ref|YP_004280699.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064632|gb|ADY68321.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 305

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 146/292 (50%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G F+ AA  + ++ S++S+ I+ LE  +G +L  R  R   LT +G   
Sbjct: 11  EMEVFVQVVERGGFSSAARSVGMTPSAVSKLIARLEARLGTRLINRSTRVFKLTSEGCVF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +   +E  +  +  +   PSG+LR++T+     ++L G L EFL  YP+I + +
Sbjct: 71  FERATRILADIEDAER-IASAGEVPSGRLRLSTSASYATHVLAGILPEFLERYPEITVDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +  +D+  +  D A+R   P++SSSLI R+L    M   AAP Y+     P +I+EL
Sbjct: 130 VQSDLVVDLLEERMDVAVRAG-PLKSSSLIARRLGDTAMTIVAAPCYVDRRGLPRTIEEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++H+ +  G    + M+ +  L +    I  P  + +Q N   ++ Q  + G+GIA L +
Sbjct: 189 ERHDRLGLG--YTRSMDGWP-LISAGATIFAPVAARVQANDGEALRQLVLAGNGIARLAN 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLK 293
           + ++D+     LV ++++         +  +  +      +++   +F+  +
Sbjct: 246 FTIRDDLRAGRLVPVLDEYNPGDREEFHAIHIGQGGPLPSRVRVLLDFLAKR 297


>gi|221197243|ref|ZP_03570290.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans
           CGD2M]
 gi|221203915|ref|ZP_03576933.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans
           CGD2]
 gi|221176081|gb|EEE08510.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans
           CGD2]
 gi|221183797|gb|EEE16197.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans
           CGD2M]
          Length = 302

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 123/275 (44%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 87  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L +      AAP YL     P +  EL +HN I    GD      
Sbjct: 147 RFGEP-PDTRVVARRLASNRRLLCAAPAYLARHGTPGTPHELTRHNCIGIRQGDEGYGIW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
                     R         L  N     +++ + G GI +  ++ ++D   +  LV ++
Sbjct: 206 RLTTGRGAARRTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADGRLVVVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D  TPS  +Y  Y +  + + +++AF +F+  + 
Sbjct: 266 PDYETPSADIYAVYAQRHQMSTRIRAFVDFLAAEL 300


>gi|254418847|ref|ZP_05032571.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
 gi|196185024|gb|EDX80000.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
          Length = 308

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 136/293 (46%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  VA + SF+ AA+ + +S++++S+ ++ LE ++   L +R +R  +LT+ G
Sbjct: 6   DLEAMAIFAKVAEAQSFSGAADVMGMSKATVSKAVTRLEQQLKTTLLHRTSRRFSLTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +  + E    E  + SV P G +R+AT +  G   +  +L EFL  +PD+ 
Sbjct: 66  RTLAARAGLMLAEAEGAVSEALDMSVTPRGLVRLATPMSFGMAYVAPSLPEFLATHPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L ++ ID+     DCA+R+   +  SSL  R+L  +     A+P YL     P   
Sbjct: 126 IDLHLSDEVIDLVGGGFDCALRIAA-LPDSSLTARRLRPVERRLVASPDYLAQRGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L++H  + +  +     + + ++      +       L+ N+  ++      G G+  
Sbjct: 185 HDLERHACLGYAYM--STPDVWRFINDAGEEVSVRPRGPLRANNSDALTASLCAGLGVFP 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            PD+I      + +L  +M +       ++   P       ++ A  +++  +
Sbjct: 243 QPDFIYWKDVADGHLETVMSEWRLAPIALHLVAPGGGPRPARVTAMMDYLARR 295


>gi|51597840|ref|YP_072031.1| DNA-binding transcriptional regulator [Yersinia pseudotuberculosis
           IP 32953]
 gi|51591122|emb|CAH22787.1| probable lysR-family transcriptional regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
          Length = 303

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 127/291 (43%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA +L  S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKQMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     + L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQQVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKAYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q+S L  R+L  + M   AA  YL     P    
Sbjct: 124 NLVAGIPAPDLIADGLDVVIRVGA-LQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPAKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMANFSWLEYNVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLKAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGEVEILFKHYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|257485983|ref|ZP_05640024.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330891711|gb|EGH24372.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330988647|gb|EGH86750.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010307|gb|EGH90363.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 306

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 139/297 (46%), Gaps = 9/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA +GSFT AA++L L+ S++S+ ++ LE+ +G++LF R  R L LTE+G+
Sbjct: 11  LKGIETFVAVANAGSFTAAADRLSLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGA 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H V + +   LE  +  L     +P+G+LRI      G+      +  F   +  ++ 
Sbjct: 71  AYHAVCTRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRP 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   ++ +DI  +  D A+R+  P +  + +  R L T  +   AAP YL+    P + 
Sbjct: 131 RITFTDRFVDILEEGIDLAVRIGGPAVWPAGVAHRYLGTERVIFCAAPAYLERHGVPTTF 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           ++L  H  I FG           WL   D+   E R   + L + +  + +       GI
Sbjct: 191 EDLASHACILFGRGDGSTSP---WLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGI 247

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L  +++++      LV I+  + T    ++  +P   ++  K++A    +    R
Sbjct: 248 AQLATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQALVERLSEALR 304


>gi|315122951|ref|YP_004064957.1| putative LysR-family transcriptional regulatory protein
           [Pseudoalteromonas sp. SM9913]
 gi|315016711|gb|ADT70048.1| putative LysR-family transcriptional regulatory protein
           [Pseudoalteromonas sp. SM9913]
          Length = 295

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 126/292 (43%), Gaps = 11/292 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA SGSFT  A++L +S+  ++R I   E  +  +L +R  R +TLT  G     
Sbjct: 8   QVFVDVAYSGSFTATADRLEMSRPMVTRHIESAEAWLNTRLLHRTTRKVTLTTAGEACLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              +   +     +E  +S  + SGK+R+AT++ LG   L      F+  +P +QI + L
Sbjct: 68  EIEQWLAQANRL-VEQTKSQQQLSGKIRVATSMSLGFAQLAPIFTRFMKRHPSVQIDIDL 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++   D+     D AIR+       SLI + +        A+  YL +     + Q+L  
Sbjct: 127 EDSTTDLIEQRVDLAIRIAAN-PDPSLIGKPIAECESILVASASYLADYPPITTPQQLST 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  + +     K  + + W            + C L  N   +++   + G GI++ P Y
Sbjct: 186 HQCLGY-----KNFDRYIWHLHNGDEFQSVDVKCNLSANEATTLLHAAIAGGGISVQPTY 240

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +      +  L R++         +Y  YP     +  ++A  + +  + ++
Sbjct: 241 LANQYILDGRLQRVLAPWTLNPMKIYVLYPSRQHLSATVRALIDTLSEEFKN 292


>gi|167589951|ref|ZP_02382339.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 318

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 124/295 (42%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L VF  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L +T+
Sbjct: 6   DVNLNRLAVFVAVVEAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLAVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    E+    +   +    G LR++  ID G  ++   +      +P 
Sbjct: 66  AGRAFYDACRDIMRATESALDAVSSETGPLRGTLRVSAPIDYGAQVVAPAIVALRDAHPA 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++LI +++ +D+  D  D AIR+ + +  S+    +L        A+P ++     P 
Sbjct: 126 LDVELIANDRLVDLVADNIDVAIRIGR-LADSNYRAVQLGEYEKWPVASPAFVARWGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +    L     + F               + +  N+  +     + G G 
Sbjct: 185 DPAALAALPFVMLSTLPRP--QTFELENARGGKASVRCTAHVVSNTATACRAIALAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LL D+   D+     LVR++    +P   ++  +P     + K++AF   +  +
Sbjct: 243 GLLTDFSTADDVAAGRLVRLLPGWRSPPAGIHAIFPSTRLPSPKVRAFIEAMREE 297


>gi|54302723|ref|YP_132716.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46916147|emb|CAG22916.1| putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 307

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 124/304 (40%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A   L LS ++++ ++  LE   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMAMFVSIVKHQGLAAAGRDLGLSPATMTARLQALEERYGVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+   +   +  +Q    +  G L+I    D+G+  +   L EF   YPD
Sbjct: 61  SGELYHKACIEILDNVSEAENLIQNGVKEVKGSLKIVAPKDIGKQYILPILSEFCKQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L LD+   +I+    D  IR  + +  SSLI R+L        A+P YL     PL
Sbjct: 121 VVPYLYLDDHISNIAESGMDIVIRYGE-LADSSLISRRLSPSRRVLCASPEYLAKHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             Q+L  H+ +    ++    E   W     D+      +     +    I  + + G G
Sbjct: 180 KPQDLVNHDCLA---MLRSNEELKTWHFQEQDKKNAITVVPKRFSDDGEVIRYWALEGVG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+ +     LV ++   +          S  +   Y        +++ F +F
Sbjct: 237 IALKSVLDVQADINSLRLVTVLNGYMKNFNTSTSISSTDLNVVYISKKYQPKRIRLFLDF 296

Query: 290 IFLK 293
           +F +
Sbjct: 297 LFDR 300


>gi|254251650|ref|ZP_04944968.1| LysR [Burkholderia dolosa AUO158]
 gi|124894259|gb|EAY68139.1| LysR [Burkholderia dolosa AUO158]
          Length = 309

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT 
Sbjct: 1   MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETGLGTRLLHRTTRQVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  + +      +       G+L +     + + ++   L      YP 
Sbjct: 61  DGTLLVERGRRLLAEADELDRLFRRRGRDVVGRLNVDVPSRIARRVIAPALPALFRRYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P 
Sbjct: 121 LQLALGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGHFELINCASPDYLRECGVPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGS 239
               L   H  I +    P      +W   VD      P  S + VN+  + +  C+ G 
Sbjct: 180 HPDALANGHRAIGYAS--PTTGRALDWEYCVDGARHALPLPSRVIVNNAETYIASCIAGM 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +P + V    D+  LV +M         V   YP     + +L AF  +
Sbjct: 238 GLIQIPRFDVAHLLDSGALVEVMPRYRAAPMDVSAVYPHRRHRSRRLNAFVEW 290


>gi|170022733|ref|YP_001719238.1| putative DNA-binding transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|169749267|gb|ACA66785.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
          Length = 303

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 127/291 (43%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA +L  S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKQMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     + L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQQVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKAYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q+S L  R+L  + M   AA  YL     P    
Sbjct: 124 NLVAGIPAPDLIADGLDVVIRVGA-LQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPAKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMANFSWLEYNVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLKAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGEVEILFKHYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|82778551|ref|YP_404900.1| putative DNA-binding transcriptional regulator [Shigella
           dysenteriae Sd197]
 gi|309785569|ref|ZP_07680200.1| HTH-type transcriptional activator aaeR [Shigella dysenteriae 1617]
 gi|81242699|gb|ABB63409.1| quorum sensing regulator A [Shigella dysenteriae Sd197]
 gi|308926689|gb|EFP72165.1| HTH-type transcriptional activator aaeR [Shigella dysenteriae 1617]
          Length = 309

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 130/287 (45%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++++++   G+G+A +
Sbjct: 183 DLSSHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGLAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P  +++ +     L  ++    +    VY  Y E  K   K++   N
Sbjct: 240 PLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 286


>gi|149917393|ref|ZP_01905891.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149821730|gb|EDM81126.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 323

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 129/287 (44%), Gaps = 7/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L VF  V  +G FT AA QL LS+S++S ++  LE  +G+KL  R  R + LTE G +L
Sbjct: 11  DLAVFGAVVDAGGFTAAAAQLGLSKSAVSSRVRRLEARLGVKLLNRTTRRMALTEAGGRL 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    V  +LE    E      +  G++R+   + LGQ  L      FL   P + I+L
Sbjct: 71  ARRVELVGGELEQASEEASALGSERVGRIRVNAPVSLGQRHLAEPTARFLCANPRVSIEL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  + +D+  +  D AIR+  P+  SSL  RKL T      A+P YL     P +  +L
Sbjct: 131 DLSERRVDMIAEQYDLAIRVG-PLGDSSLRARKLATSRQLVVASPDYLARRGRPQTPADL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ + +   +     +F                 +  ++   +      G G+A LPD
Sbjct: 190 REHDCLLYRHQLTGAAWEFG---EGRGRSRVRVRGPMLSDNGDCLASAARAGLGLASLPD 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +IV +      L  +++D       ++  + E    +  L+A+ + +
Sbjct: 247 FIVAEAIARGELAVVLDDHCRSLSPIHALFVEGRLMSNALRAYLDLL 293


>gi|167585517|ref|ZP_02377905.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 310

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 118/299 (39%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVATRLFERSTRQLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQ       GK+R+++T D G+N L   L  F   +PD
Sbjct: 61  EGRLYLNCCRQALQALDDADAMLQAGRNVVGGKVRLSSTSDFGRNQLLDWLDAFTAQHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L   +  +++  D  D AIR   P    +LI R+L        A+P ++     P 
Sbjct: 121 VTFSLTAADSSLNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCASPAFVARHGAPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +   I                    +    P  +  + N       + + G GI
Sbjct: 180 DPHDLARFPCIVITLASGPLNAWRFTRGGEVQTYTVPLANAFETNDGGLARAWALRGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
                + V D+     L  ++ D       ++  +        +++   +F+  + AR+
Sbjct: 240 VQKSIWDVADDVRAGRLRVLLPDWRQEDAPLHAIHHSRRYMAPRVRVLLDFLAERFARE 298


>gi|293605288|ref|ZP_06687674.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292816344|gb|EFF75439.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 324

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 144/303 (47%), Gaps = 9/303 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + + +   V  +GSF+ AA Q  +  +++SR+++ LE  +G++L +R  R L+LT
Sbjct: 24  MSDRLEAMALLLAVVEAGSFSQAARQAKMPLATVSRKVADLEAHLGVRLLHRSTRQLSLT 83

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G        ++   +   +       V+P G+L +   I  G+  L   + EFL  YP
Sbjct: 84  EAGQAYVAACRQILDAVGEAERAATGEYVEPKGELVMTAPIVFGRLHLLPVIAEFLKTYP 143

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++++L ++ + +  ++ D A+R+   +  SSL+   + ++     A+P YL     P
Sbjct: 144 DIDVRMVLTDRVVPLLEEHIDLAVRIAD-LPDSSLVAIPVGSVRRVVCASPAYLARHGTP 202

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  ++L  H  +TF  +  + + +F    +    I  P  S L V++  + +   V G G
Sbjct: 203 LHPRDLSHHACVTFEKMASRQVWNFQ---SGKSSIAIPVRSRLAVSTAEAAVDAAVAGIG 259

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF--LKAR 295
           +  +  Y +        L  ++ D   PS+ +   +        K++AF +F    LKAR
Sbjct: 260 LTRVISYQMASALQAGELDIVLADFEPPSWPISLVHTGQGALPLKVRAFLDFAAPRLKAR 319

Query: 296 DWK 298
            ++
Sbjct: 320 SYE 322


>gi|293605825|ref|ZP_06688197.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292815783|gb|EFF74892.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 292

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + ++L++F  V  +GSFT AA+ L  +++ +S  +  LE E+G+ L  R  R L LT  
Sbjct: 2   INLNRLQMFVAVVDAGSFTAAADSLGTTKAVVSFNVKQLEQELGVALLTRSTRRLALTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   H   S + H  +    + +      SG LR+  ++D G  ++   L  F  L+P +
Sbjct: 62  GEGFHASCSRLLHDADAAVDQARSGQTALSGSLRVTASVDYGNRIVVPALAAFARLHPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     +   D+  +  D AIR+   +  SS    ++    +   A+P  L     P S
Sbjct: 122 RVAYQASSAQADLIGERLDVAIRVGA-LADSSHRATRIGEFKLLLVASPALLAEHGTPRS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L     +      P   + +    +  R          Q ++  +++ +   G G+A
Sbjct: 181 LDALAALPWLA---NRPGRSDHWRLTDSKGREHALRVAPVAQADTASALLAFAESGCGVA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPD+++++      L R++     P   V   YP+    + K++ F +F+
Sbjct: 238 ALPDWLLEEPLARGALQRVLPSYALPRQPVCAVYPDTRHVSAKVRRFIDFL 288


>gi|238913553|ref|ZP_04657390.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 307

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 129/286 (45%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +     +   +F  +A                N  ++++++   G+GIA +P  
Sbjct: 180 SHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGTGIAYVPLM 236

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V D     +L  ++    +    VY  Y E  K   K++   N +
Sbjct: 237 WVIDEINRGDLEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINAL 282


>gi|311107756|ref|YP_003980609.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310762445|gb|ADP17894.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           149 [Achromobacter xylosoxidans A8]
          Length = 300

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 126/298 (42%), Gaps = 7/298 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ LR+F   A  GSF+ AA +L L+ +  S  +  LE  +  +LF R  R L LT  G 
Sbjct: 4   FEDLRIFMAAADQGSFSAAARELDLTPAVASAALKRLELALEARLFVRSTRSLRLTSDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           LE  +  +  +  + SG L ++   DLG+++L   L EF   +P + +
Sbjct: 64  RYLEHARSALSALEAGRNAVARNKTEISGTLSLSIPSDLGRHVLLPWLDEFQERHPRVNL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           Q+ + ++  D+     D A+R   P   S L+   L         A+P YL     P   
Sbjct: 124 QVRISDRLADLYRQPVDLAVRYGTP-NDSGLVALPLSEHNRRVVCASPAYLARHGVPQVP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN ++F  ++ + + D          +  P       +    + ++ + G G+A 
Sbjct: 183 DDLRRHNCLSF--VLGETLHDRWAFRHEGAALTVPVKGDRVGDDGELVRRWALAGHGLAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              Y V  +     L+ ++ D  +    +Y      +  +  +K  R F+  + + ++
Sbjct: 241 KSRYDVLADLRAGRLIEVLADYTSEPSPLYLLCVHRMLLSPAVKRLREFLHERFKAFE 298


>gi|187776100|ref|ZP_02800405.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188024809|ref|ZP_02774174.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|189010526|ref|ZP_02807660.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189402200|ref|ZP_02780862.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189403312|ref|ZP_02794663.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189405144|ref|ZP_02813580.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|208806663|ref|ZP_03249000.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208815417|ref|ZP_03256596.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208822915|ref|ZP_03263233.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209396927|ref|YP_002268923.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|187769114|gb|EDU32958.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188016471|gb|EDU54593.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|188999905|gb|EDU68891.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189356867|gb|EDU75286.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189361300|gb|EDU79719.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189371629|gb|EDU90045.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|208726464|gb|EDZ76065.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208732065|gb|EDZ80753.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208737108|gb|EDZ84792.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209158327|gb|ACI35760.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|326347251|gb|EGD70977.1| Putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. 1125]
          Length = 308

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 142/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++ +++S+ +  LE  +  KL YR  R +
Sbjct: 2   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITLAALSQNLKSLEERLNTKLIYRTTRNI 61

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 62  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 122 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 181 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSKVVGGNEEFEIEVSGKYISNDDESMIRM 240

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 241 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 300

Query: 292 LK 293
            K
Sbjct: 301 EK 302


>gi|86357342|ref|YP_469234.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86281444|gb|ABC90507.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 295

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 127/293 (43%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  VAR  SF  A E+  ++ S++S  +  LE  +GI+L  R  R ++LTE G
Sbjct: 5   ELSELAAFAAVARHKSFRKAGEERGVTASAVSHAVLNLEDRIGIRLLNRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +  + ++      L      P G++RI     +G  ++   +   L   P++Q
Sbjct: 65  ELLISHLAPAFGEMAAALDALNRYRSTPFGRVRINVPNSIGPFVIGRVIAPLLQRNPNLQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +DI  +  D  IR  + +    +  R    I +    +P Y +   +P + 
Sbjct: 125 LEINATDRLVDIVEEGFDAGIRFGERVTEGMIALRIKPRIRLVVVGSPAYFEGRPKPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H  I   ++ P            D+ +       L ++ +  ++Q  + G G+A 
Sbjct: 185 YELKRHLCI--QNMFPSGARYAWEFEKDDQMVSFQPTGPLSLDDHELMLQAALGGVGLAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +  V+    +  L+++++D   P   +Y  YP     +   +A  + I  +
Sbjct: 243 IWEPRVEKAIADGELIQVLDDWCQPEEPLYLYYPSRRHMSAGFRAVIDAIRAE 295


>gi|91223225|ref|ZP_01258491.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91192038|gb|EAS78301.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 309

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +       E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 72  YDQSIAMVNAAQQAVELSAEDHAEPTGALTVAAPEAFLNSVLQPFVLPFLERYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+     D A +L       +L+ +++   ++   A+P YL     P    EL
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDK-PDENLVLKEISKTNLVLCASPDYLAKHGMPEHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++H+ I   +     +  F      +            VN     +     G GI +  D
Sbjct: 191 EQHDCIYLAENDKDNIWSF---FKEEAFHSIAVSGRYAVNHSQMRLNGVKSGLGIGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++KD      +V ++ D +  S     +   Y +      +L+ F +F+  
Sbjct: 248 FVIKDALEQGEVVEVLSDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFVKE 299


>gi|78067279|ref|YP_370048.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968024|gb|ABB09404.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 300

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 141/300 (47%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD   L    V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   I+  +S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEDAAIDAGQSKARVRGRLRVNVDATFGHYVLAPKMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+  Y+   
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETRVLTCASAAYVARH 179

Query: 178 REPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYC 235
            EP   ++L   H  +   D  P     F W     + +        L VN    ++  C
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPFEWEFHRGKEVVPFDAAGRLMVNDTGMLLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G+GIA L +   +D   +  L+ ++ +     F +Y  +  +   + K++ F +F+  
Sbjct: 238 LGGAGIAQLLELYARDILADGRLMLLLPEWADEKFPLYAYHHASNLVSAKVRVFLDFVRA 297


>gi|300718641|ref|YP_003743444.1| temperature-dependent LysR-family regulator A [Erwinia billingiae
           Eb661]
 gi|299064477|emb|CAX61597.1| Putative temperature-dependent LysR-family regulator A [Erwinia
           billingiae Eb661]
          Length = 305

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 127/291 (43%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   GSFT AA ++ +S S++S+ ++ LE E+ +KL  R  R L LTE G 
Sbjct: 4   LKGMSVFARVVELGSFTAAANRMQMSVSAVSQTVAKLEDELQVKLLNRSTRSLGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +  + +    +L   +  P G LRI ++  + QN+L     E L  YP + +
Sbjct: 64  IYFQGCRRMMSEAQQVHEQLYAFNNTPVGTLRIGSSSTMAQNVLANMTAEMLREYPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+  +   D+  D  D  IR+   +Q SSL  R+L ++ M   AA  YL     P    
Sbjct: 124 NLVTGSPAPDLIADGLDLVIRVGA-LQDSSLFSRRLGSMPMVVCAAKSYLTQHGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L   + + +     +   DF   +     I          N   +++++ V G+GIA +
Sbjct: 183 DLGNFSWLEYSV---RPDNDFELTSPEGVSIRLSLQGRFATNDSQTLIRWLVSGTGIAHV 239

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P   V D  N  ++        +    VY  Y +  K   K++   N++  
Sbjct: 240 PLMWVIDEINAGQVEILFAHYQSAPRPVYAVYTQKDKLPLKVQVCINYLTE 290


>gi|260769365|ref|ZP_05878298.1| LysR-family transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260614703|gb|EEX39889.1| LysR-family transcriptional regulator [Vibrio furnissii CIP 102972]
          Length = 300

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 129/287 (44%), Gaps = 11/287 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA + SFT  A++L +S+  ++R I  +E+ + ++L  R  R ++LT  G +   
Sbjct: 8   KVFIDVATTNSFTATADRLEMSRPMVTRYIDAMESWLNVRLLNRTTRKVSLTTAGEECLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +    + E  Q  L        GK+R+AT++  G + L   +  FL  +P ++I + +
Sbjct: 68  EVALWVDQAEGLQHRLLNRDE-LRGKVRVATSMSFGFSQLIPAVNSFLADHPQVEIDIDV 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++  D+  +  D AIR+       SLI R++        A+P YL+N  +  +  +L +
Sbjct: 127 QDRAADLVTERIDLAIRIAAN-PDPSLIGRRIGRCDSVLVASPDYLENASDIRTPADLAQ 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  + +     K  +   W  T         + C L  N   +++   VLG G+++ P Y
Sbjct: 186 HRCLGY-----KNFDRHVWNLTRGSEQAAVEVHCALTANEATTLLSAAVLGMGVSMQPTY 240

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V+       LV ++         +Y  YP        +++  + + 
Sbjct: 241 LVQSALARGELVPVLAQWQPSVMDIYALYPSRKHLAPAVRSLIDHLV 287


>gi|90420070|ref|ZP_01227978.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335404|gb|EAS49154.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 296

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 129/292 (44%), Gaps = 10/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  +   GSFT AA  L L +S+ +     LET +G +L  R  R +  T 
Sbjct: 1   MDHLDRIRLFVRIVERGSFTSAASDLGLPRSTATEATKSLETYLGTRLLDRTTRHVAPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   L+  +   + +  +P G LR+     L +  L   L EFL  YP 
Sbjct: 61  DGESYYRRCITILADLDEAEGAFRGA--EPRGTLRVDAHSRLTRTFLLPGLPEFLNRYPL 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L   ++ +D+  +  DC IR   P + S LI R L TI     A+P YL+    P 
Sbjct: 119 IDLHLGQGDRLVDLVREGVDCVIRAGHP-EDSRLILRSLGTIEEITVASPTYLQRHGMPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L  H  + F  +  +         T+D  +   R+ S + V++  ++     LG G
Sbjct: 178 TPDDLHGHQTVGF--VSSRTGGILPLEFTMDGIVRPVRLPSRVIVSNSDAMADLARLGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +   P Y   D+     LV ++ D       +   YP+  +   +L+ F ++
Sbjct: 236 LVQAPRYRFADDLASGRLVEVLTDFPPSPTPLSALYPQNRQLAPRLRVFLDW 287


>gi|78060495|ref|YP_367070.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965045|gb|ABB06426.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 307

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 129/298 (43%), Gaps = 12/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  V R+GSF+ AA +L +  +++SR+I  LE ++G +L +R  R L  + +
Sbjct: 2   LDLNDLALFVQVVRAGSFSEAARRLRMPANTLSRRIDQLEGQLGTRLLHRSTRKLAPSTE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    +    ++   +    +    PSG +R+     L +      L EF   YP I
Sbjct: 62  GQALFERYAPALDRIFEIERLHADGQE-PSGTVRVTAMAGLFEIFRLEWLAEFYARYPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +LD+   D+  +  D A+R+       S   R++    M   A+P YL+    P +
Sbjct: 121 SIDFLLDDTPSDLIGERIDLALRMGIE-TGGSFRVRRIAPGTMILAASPAYLERRGAPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            +EL  H+ +T      + M    W     R   E  I S   VN    ++Q C+ G G+
Sbjct: 180 PRELADHDCLTVSGRQGRAM----WRLQGPRGTQEISIDSRFSVNDMRVVVQACIAGLGV 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP  + +   +   LVR++      +    +   Y         +  F +F+  K 
Sbjct: 236 ALLPQLLAEPGIEQGKLVRVLPSYRRSSSDLGLQLVYTSRPPLAPAVTVFADFLLEKL 293


>gi|309788598|ref|ZP_07683199.1| uncharacterized HTH-type transcriptional regulator yeaT [Shigella
           dysenteriae 1617]
 gi|308923529|gb|EFP69035.1| uncharacterized HTH-type transcriptional regulator yeaT [Shigella
           dysenteriae 1617]
          Length = 307

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALSALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLLIKERDHPFGVW--QLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLVQVLLEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|115525808|ref|YP_782719.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115519755|gb|ABJ07739.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisA53]
          Length = 299

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 130/301 (43%), Gaps = 9/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  VA    F  AA +L LS S+++R ++ LE  VG +L  R  R +TLT+
Sbjct: 1   MDRLDAMTAFVAVADLQGFAPAARKLRLSPSAVTRLVAALEERVGARLLQRTTRSVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +   +E  +   Q    +PSG+L ++     G+  +   +  +L  YP+
Sbjct: 61  VGARYLERARRILADVEEAEHSAQAERTRPSGRLVVSAPFGFGRVHVTPLISAWLKRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +L L ++ +++  D  DCAIR+   +  SSL+ R +  +     A+P YL     P 
Sbjct: 121 VAGELRLTDRVVNLVEDGVDCAIRIGH-LPDSSLVARAVGDMRRIVVASPAYLAARGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q L  H+ I FG L       F       R I          N   + + +     G+
Sbjct: 180 TPQALAGHDTIRFGALSAAPEWRF---VEAGREIRVAVAPRFTTNVADAAIWHAEQDGGL 236

Query: 242 ALL---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +             L  +++    P   +   YP +   + K+++F + +  +A +W+
Sbjct: 237 TRVLAYQAADALAAGRLKVVLKKFEPPPLPINVVYPTSRLLSAKVRSFVDLVVEQA-EWR 295

Query: 299 F 299
           F
Sbjct: 296 F 296


>gi|307261393|ref|ZP_07543068.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869124|gb|EFN00926.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 294

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 127/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  +FT AA +L +SQS++SR I  LE+ +G++LF R  R L+LT  G
Sbjct: 6   NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L +   + + KL+     L      PSG++RI  +      +L   L +F   +P+IQ
Sbjct: 66  NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRHPEIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D    DI  +  D  +R    +    +  R      M    +P Y      P + 
Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPKTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +       M  ++++   +    + +      N Y SI     LG G+  
Sbjct: 186 SDLAHHQCLNYR-YASGAMYHWDFIVNHEHIKIKTQGQWTFSNDY-SIRDAARLGLGLGY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +   +V+   +   L++++ +        +  YP     +  LK   +
Sbjct: 244 ICKDLVQKELEKGELIQVLSEFSYTFTGFHLYYPH-RNISPALKCVID 290


>gi|209519846|ref|ZP_03268630.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499722|gb|EDZ99793.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 318

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 137/293 (46%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L++F  +AR GSF  A+ ++ LS S +S++I+ LE  +G+KLF R  R +++T  G 
Sbjct: 15  LRDLQLFCHIARRGSFVAASTEMGLSPSHVSKRIAMLEAGLGVKLFQRTTRRVSVTSDGE 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   ++   ++       +   + SG LRI+T++ LG+  +   L      +P+++I
Sbjct: 75  AALQWAQKILDDVQGMADAFADRRTELSGLLRISTSLRLGRKHVSPILAMLRERHPNLEI 134

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++  D+  +  D  +R+ + +Q   LI  ++V       A+P YL+    P+ + 
Sbjct: 135 WLELLDRRADVVGENFDIDVRVGE-VQEPHLIAHRMVESARILCASPAYLEQHGAPVELN 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + F     +       L+  D          +  N    ++Q+   G GI ++
Sbjct: 194 DLTSHDCLLFRGRDDRFGVWR--LSGPDGEKSVKVTGTVASNLSDIVVQWAKDGYGIVMV 251

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             + V ++     LVR++ D    S  V+    E L ++ +++    F+  + 
Sbjct: 252 SIWDVAESLRAGELVRVLPDYQQ-SADVWAVTAERLSSSARIQVCIEFLREQL 303


>gi|134293752|ref|YP_001117488.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136909|gb|ABO58023.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 322

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 126/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  + +    E + + ++PSGK+RI     LGQ+ +  ++  +    P
Sbjct: 60  ESGERYFERAKSILAEFDYANAEARNALLRPSGKMRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGTSCSVLVASREYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H  +          E     +  +  + E + +  QVN   ++        G
Sbjct: 180 QTPDDLPNHVCLRLDTPASPASEWRLERSDGEETVYELQPAPFQVNVPDALCVAVRASRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +  Y V D+     L+R++ +    + +VY  Y        K++ F + +
Sbjct: 240 IACVALYTVLDDIREGRLIRVLPEYRLQTVSVYAVYATRRYLDAKIRTFLDHL 292


>gi|107023627|ref|YP_621954.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690712|ref|YP_836335.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893816|gb|ABF76981.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648801|gb|ABK09442.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 325

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 124/300 (41%), Gaps = 6/300 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D    +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT
Sbjct: 15  RMDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLT 74

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G        +    L+     LQE     SGK+R+++T D G++ L   L EF  L+P
Sbjct: 75  DEGKLYLNCCRQALQALDDADAMLQEGRNVVSGKVRLSSTSDFGRHQLLDWLHEFTTLHP 134

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   L   +   ++  D  D AIR   P    +LI R+L T      AAP +++    P
Sbjct: 135 GVTFSLTASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLATNRRVLCAAPSFVERHGLP 193

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +                        +    P  +  + N      ++ + G G
Sbjct: 194 ADPHDLARFPCNVITIASGPMNTWHFTRGDEVQIHTVPVSTAFETNDGGLTREWTLRGHG 253

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           IAL   + + D+     L  ++ D       ++  Y        +++   +F+  + AR+
Sbjct: 254 IALKSLWDIADDVRAGRLRVLLPDWRHQDAPLHAIYHSKRYMAPRVRVLLDFLAERFARE 313


>gi|206563010|ref|YP_002233773.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039050|emb|CAR55013.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 297

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE +  ++L  R  R  T+TE G
Sbjct: 3   DLNDLYYFVKVVEHGGFTQAGRALDVPKSTLSRRIAALEAQYDVRLLQRTTRHFTVTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + +  +  ++    +P G +R++    L +  +   +  F+ ++P + 
Sbjct: 63  REFYERCLAVLVEADAAREVIERRHAEPRGIVRVSCPTALLEYRVSALVARFMAIHPQVH 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAPH+L     P  
Sbjct: 123 VHLEATNRRVDLLSEGFDLALRVRFPPLEDSDLVMRVLADSPQRLVAAPHWLDGRAAPSD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L     + +G   P     +  +                 +   ++    + G GI 
Sbjct: 183 PAGLIGAPSLDWG---PARHHVWQLVGPNGEHAQLRHHPRFVTDDMHALRDAAIHGVGIV 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP  +V+D   +  L+ ++         V+  +P       +++   +F+    R
Sbjct: 240 QLPCMVVEDDLRDGTLIDVLPGWAPKGGVVHAVFPSRRGLLPRVRLLIDFLAEHIR 295


>gi|56414861|ref|YP_151936.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363789|ref|YP_002143426.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129118|gb|AAV78624.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095266|emb|CAR60819.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 303

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARNPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|107026140|ref|YP_623651.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692676|ref|YP_838209.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170738075|ref|YP_001779335.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895514|gb|ABF78678.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650676|gb|ABK11316.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169820263|gb|ACA94845.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 303

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 132/300 (44%), Gaps = 7/300 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +R+F  V   G+FT AA QL +  S +SR+I  LE ++G++L YR  R +++TE 
Sbjct: 1   MDLESIRIFLRVVERGNFTAAATQLDMPLSRVSRKIKQLEEDLGVQLLYRTTRRVSVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     +++    +P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYERCLRAEEILLDADRQVRALRTEPEGTLRVLVPYAIGLFELEPALAEFRRRYPLV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  S  + R L   H    A+PHYL     P +
Sbjct: 121 QLVLIYDNSALDLVEHGFDVALRTG-VLSDSGYVARSLGWSHAKFAASPHYLDRAGRPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H+++  G   P                  P    L  N  +++++    G GIA
Sbjct: 180 PQDLADHDILFVGRDTPGLT--LRLTNAAGDVADVPVRPVLISNESVTVLRQAASGGGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           L+  +      ++  L  ++ D   T    ++  YP+      K++AF  F+      W+
Sbjct: 238 LISTHFTTRRLESNELEIVLPDWHRTDDVELHALYPKRATLDSKVRAFVEFLTEVFTAWR 297


>gi|320325421|gb|EFW81486.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327438|gb|EFW83451.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330877344|gb|EGH11493.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 306

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 139/297 (46%), Gaps = 9/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA +GSFT AA++L L+ S++S+ ++ LE+ +G++LF R  R L LTE+G+
Sbjct: 11  LKGIETFVAVANAGSFTAAADRLSLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGA 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H V + +   LE  +  L     +P+G+LRI      G+      +  F   +  ++ 
Sbjct: 71  AYHAVCTRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRP 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   ++ +DI  +  D A+R+  P +  + +  R L T  +   AAP YL+    P + 
Sbjct: 131 RITFTDRFVDILEEGIDLAVRIGGPAVWPAGVAHRYLGTERVIFCAAPAYLERHGIPTTF 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           ++L  H  I FG           WL   D+   E R   + L + +  + +       GI
Sbjct: 191 EDLASHACILFGRGDGSTSP---WLFVDDQGQREARAVEARLVIGNGEAQVAAVTSAWGI 247

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L  +++++      LV I+  + T    ++  +P   ++  K++A    +    R
Sbjct: 248 AQLATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQALVERLSEALR 304


>gi|163801378|ref|ZP_02195277.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
 gi|159174867|gb|EDP59667.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
          Length = 309

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 130/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G+
Sbjct: 4   LNDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T +    L+    ++  +  + SG L I    D G+N+L   L EF+ +YP++ I
Sbjct: 64  LFLDKTIQALATLQEGLDQISSARGELSGPLHITAPSDFGRNMLLNWLDEFIDIYPNVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+     D AIR  +P   S+L+   L +       A+P Y+ +  E    
Sbjct: 124 KLELSDSLTDMYTKPVDIAIRYGEP-ADSNLVTLALCSANERILCASPEYVADNPELTKP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L++HN + +  ++   + +   L    +         L  N      +  + G GIA 
Sbjct: 183 DDLNQHNCLCY--MVADSIYNKWTLTREGKTEQVVVSGQLISNDSELSHRLALKGKGIAN 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +  +     LVR++ +       +Y    +    T  ++ FR+FI  K
Sbjct: 241 KSLMDISQDLLEGRLVRVLPEWGCGPVPLYMVCADRRLLTPTIRTFRDFIQEK 293


>gi|124266432|ref|YP_001020436.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124259207|gb|ABM94201.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 309

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 125/300 (41%), Gaps = 5/300 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  VARSGSF+ AA QL L+ +++S  I  +E  +  +L  R  R L LT +
Sbjct: 1   MHLDDLNLFIQVARSGSFSAAARQLALTPAAVSATIKRIEASLQRRLIERSTRALRLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  +       L+       G++++A   D    LL   L  +L  +P +
Sbjct: 61  GERFLATCEAMVTQWAEGTAGLRAEPGTVEGEVQLAAPADTTYQLLSPWLAPWLTAHPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L + ++  D+  +  D A+R    +  S L+ R L +    A A+P YL+    P +
Sbjct: 121 RLSLHVSDRLHDVRREAVDIAVRYGA-LPDSGLVARPLCSGPRIAVASPAYLRRRGTPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGI 241
             +L  H+ + +        +   W     R  GEP R+            Q+ + G GI
Sbjct: 180 PADLAGHDCLLWMLGGRANRDWRFWRGRSVRGEGEPVRVGGALCGDGSLARQWALQGRGI 239

Query: 242 A--LLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A   L D +   +   LV+++         V+   P       +++   + +  +  D +
Sbjct: 240 ASKALCDVLADLEAGRLVQVLPGHRGDEVPVHALLPSREYVPVRVRVVLDQLVERFADLQ 299


>gi|238894388|ref|YP_002919122.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546704|dbj|BAH63055.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 294

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 127/289 (43%), Gaps = 8/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+      +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI     D  +RL   + S  +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIIAQRFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I +          + W   VD + I  P              +   LG G+A
Sbjct: 186 ADLVAHPCIAYQF---GDGSLYAWELNVDGKKITHPPQGQWAFADSYMEAKAARLGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P+ ++ D+     L+R+++         Y  YP     +  L+A  +
Sbjct: 243 YVPEELITDDLAQGTLIRVLQRYSQRLEGSYLYYPH-RNVSPALRAVID 290


>gi|241205197|ref|YP_002976293.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859087|gb|ACS56754.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 307

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 135/289 (46%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E+G++L  R  R L LT  
Sbjct: 2   LDLNDIMIFARVVEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLNLTAS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +S+    +E     L E+  +P+G +RI+  +  G + LQ  + EFL   P  
Sbjct: 62  GRLYYEESSQALRTIEGANQRLAEARAEPAGTIRISAPVGFGGHFLQDAIFEFLSTCPKA 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++     D A R    ++ S+L+ RKL ++H    A+P YL     P +
Sbjct: 122 RVELRLTDDRLNLVESGIDLAFRTG-ILEDSTLVARKLGSLHRLLCASPDYLARRGPPAA 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ +  G            L                 N   ++M   + G GIA
Sbjct: 181 PEDLVRHDCVIAGQAAHAQW----LLEGPHGQETVAVSGRFAANEMQAVMAAAIAGHGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP    +    +  L R+++   TP+  ++  YP +      +KAF  
Sbjct: 237 QLPHRFAEACIKDGRLRRVLDGYTTPAGGLHVVYPSSRHLPPLVKAFIE 285


>gi|327481604|gb|AEA84914.1| Transcriptional regulator, LysR family [Pseudomonas stutzeri DSM
           4166]
          Length = 300

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 129/291 (44%), Gaps = 10/291 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  +  +GS + AA+    S +S+ R ++ LE  +G++L  R  R + LT+
Sbjct: 1   MDKLKAMANFVRIVDNGSLSAAADASGQSVASVVRSLAALERHLGVRLLNRSTRRMALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G++    +  +  +    +  L        G LR+   ++ GQ  L   +  FL  +P 
Sbjct: 61  EGAQYLAWSRRMLAEFADIEQRLDAQDGSVRGLLRLTAPVEFGQRYLAPLVNAFLEEHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L L+++ + +  +  D A+R+   +  S+L+ R L T  +   A+P YL +     
Sbjct: 121 VQVELNLNDQIVPLLDERLDLALRIGH-LPDSTLVARPLGTTRLVTCASPDYLASSPPID 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L +H  I F            +    DR   E     L  N   S    CV G GI
Sbjct: 180 TPAALKEHACILFAAQGRHW-----YYRDGDREQAEEITPRLTCNQIRSASLACVQGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             L  Y V D   +  LVR+++D       +   YP +L+ + +++AF  +
Sbjct: 235 TRLMHYQVADELADGRLVRLLKDYEPDYLPIQLVYPHSLQLSPRVRAFVEW 285


>gi|311109283|ref|YP_003982136.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763972|gb|ADP19421.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           200 [Achromobacter xylosoxidans A8]
          Length = 296

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 133/300 (44%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  +G++L  R  R + LT
Sbjct: 1   MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERSIGMRLLNRSTRKIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +  +      +L + +V+P G+LRI+    L Q  L   + EF   +P
Sbjct: 61  EAGAIYFERCRHIVEEARIAHDQLLDMAVQPKGRLRISLPTSLAQLFLPAVISEFREQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+    L  + ID   +  D  +R  +    SSLI RK+V +    YA+P YL    EP
Sbjct: 121 DIECDFDLSMRPIDPISNPFDLILRFGQQ-PDSSLISRKIVLMAHQLYASPEYLARHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  +       +    F  L + D+         L  N+   + +    G G
Sbjct: 180 RVPADLSHHECL---RPTMREESSFWMLHSGDKVERVQVSGRLSANNVGMLGRLAGQGLG 236

Query: 241 IALLPDYIVKD----NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L  +   +       LVR++ +       ++   P  +    K KAF +FI  +  D
Sbjct: 237 ITPLLVFDAMERAIKQAGLVRVLPEWSLTPLPLFALLPSRM-LPAKTKAFLDFIQPRLSD 295


>gi|259415454|ref|ZP_05739375.1| LysR family transcriptional regulatory protein [Silicibacter sp.
           TrichCH4B]
 gi|259348684|gb|EEW60446.1| LysR family transcriptional regulatory protein [Silicibacter sp.
           TrichCH4B]
          Length = 310

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 128/295 (43%), Gaps = 10/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +L+    VAR GSF  AA  L    S+ISR ++  E  +G++LF R  R L +T  
Sbjct: 1   MDISQLKTLLTVARLGSFAAAARALDQDPSAISRVVATAEARLGVRLFERSTRRLAVTGV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       + +  +L+    E + +   P+GKLRI  ++  GQ  L   L EF   YP+I
Sbjct: 61  GRGYLDRIAPLVEELDLAAEEARSARRAPTGKLRITASVAWGQECLVPLLPEFRSRYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++LI  +  +D+  +  D AIRL  P     L+   L        A+P YL       S
Sbjct: 121 ELELIFTDTYLDLLAEGIDLAIRLA-PAPQGDLVSTHLRCTRYLVCASPDYLARAGHLPS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L+ H+ +     +      + + +   +    P    + + S L++ Q   +G G  
Sbjct: 180 PAALNGHDCLRMP--LRGFDGTWRFCSPSGQEETVPVTGKVVITSPLALRQAARVGLGPT 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFI 290
           LL D++V D+     LV +  D    +       +  YP       +L+   +++
Sbjct: 238 LLADWLVADDLAQGRLVPLFPDWQVSATGFESGAWALYPSRTYMPTRLRVMLDYL 292


>gi|229514305|ref|ZP_04403766.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229348285|gb|EEO13243.1| transcriptional regulator [Vibrio cholerae TMA 21]
          Length = 312

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+   +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPVHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALTAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|295676490|ref|YP_003605014.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436333|gb|ADG15503.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 322

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 121/300 (40%), Gaps = 13/300 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + + A  +  LS +  S +I+ LE  +G +L +R  R ++LT+
Sbjct: 17  RLDLLDVALFVRAALLANVSAAGREFGLSAAVASARIAQLEKLLGARLLHRTTRRISLTQ 76

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +       +  +  +  +P G+LR++     G+  +   + EFL  YP 
Sbjct: 77  DGEVFMTRAEALLDAAAAARASVGRAQAEPQGRLRVSMPSSFGRQHVSPVISEFLRRYPG 136

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+     D AIR+   ++ SSL+ R+L        AAP YL     P 
Sbjct: 137 VSVDLRLTDQVVDLVDAGIDVAIRVG-VLKDSSLVARRLAVNRRVLCAAPSYLAAHGTPH 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L +H  +          E  +W   T   P+       L  ++   I    + G G
Sbjct: 196 HPSDLARHECVILS-------EQRDWRFVTPAGPLDVRVSGRLVTDNGEVIRDALLAGFG 248

Query: 241 IALLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IAL   + V     +  LV +++         ++  YP       K  AF +F+     D
Sbjct: 249 IALKSTWDVAPHLRSGELVSVLDSYPLADDVAIWAVYPSRAFMPPKTLAFIDFVAAHFGD 308


>gi|194364470|ref|YP_002027080.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347274|gb|ACF50397.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 303

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 7/299 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D + +R+   VA + SFT AA QL LSQS +SR I  LE  +G+KL  R+ R + LT 
Sbjct: 9   SMDLNAVRMLVQVAEARSFTVAAGQLGLSQSGLSRAIGRLEATLGVKLLQRNTRNVALTT 68

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +     S +   L+  + +L +    PSG L+I+     G+ +L   L   L  +P 
Sbjct: 69  DGRQFVEQVSPLLAGLDDAERQLADRPCTPSGTLKISAPSMFGRRVLVPLLGPLLQQHPQ 128

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++ +L ++ +D+  +  D A+R    I    ++ R L  +     A+P YL  C  P 
Sbjct: 129 LQVEAVLSDRLVDLVEEGFDAALRTG-TIADQRMVARPLKPLRWVTVASPEYLDRCGTPD 187

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +  L  H  +   +L    + D+ +L         P  + +  +    +++  + G GI
Sbjct: 188 DVAALQDHACLAVRNLRSGRLVDWQFLQDGQLREVTPP-ARMVFDCGDPLVEAAISGIGI 246

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             + D+ V D   +  L R+++     S  +   YP + +++ KL+   + +   A DW
Sbjct: 247 VQVMDFAVADALADGRLQRVLQPFEGRSRALSLIYPPSRQHSPKLQVLADALL--AGDW 303


>gi|270262476|ref|ZP_06190747.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043160|gb|EFA16253.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 300

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 134/286 (46%), Gaps = 5/286 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LRVF  VA  GSF  A+  L + ++++S  I  LE E+G +LF+R  R + LT  G  L
Sbjct: 6   RLRVFIQVAEVGSFIRASHILLMPKTTVSAAIQQLEHEMGARLFHRTTRKVQLTSDGELL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +       Q+ +    G+L +     + + ++   L +F L YPDIQ+ L
Sbjct: 66  LEKARSLLFDVNVLDTLFQQKNGPIGGRLTVDVPSRIARRIIVPALPDFFLQYPDIQLFL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ ID+  +  DC +R+   +  SSL+ + L  + M   A+P YL+    P    +L
Sbjct: 126 SASDRSIDLIQEGVDCVVRVGS-LSDSSLVSQPLGRLSMVNCASPDYLRRYGTPEHTDQL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D+H ++ +        E + W     + + +   S + VN+  + +  C+ G G+   P 
Sbjct: 185 DEHWVVGYAQPNLAGAETWQWEQE-GQSVEKTLRSRVTVNNAENYIGCCLAGLGMIQNPR 243

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + ++   D+ +L  I+      + ++   YP   + + +  AF  +
Sbjct: 244 FDLQHHLDDGSLREILPQARPSAMSIALLYPHRRQRSARFTAFAEW 289


>gi|118588657|ref|ZP_01546065.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118438643|gb|EAV45276.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 310

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/271 (29%), Positives = 134/271 (49%), Gaps = 7/271 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F  V  SGS + AA +L +++S++SR++S LE   G +L  R      LTE G +
Sbjct: 9   EDLRLFVQVVASGSISKAAAELGIAKSAVSRRLSLLEDRYGTRLVDRSPGHWDLTETGRE 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +  S     ++  + +   +   PSG L I+   D G   L   L +F   +PDIQ+ 
Sbjct: 69  LFQRASRFVSDVDDIEDDFLSNGTAPSGPLSISIPRDFGHGFLNKELIDFQARHPDIQLT 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D++ +D++ +  D AIR+ +     + I  KL T+    +A+P YL+    P SI +
Sbjct: 129 VDFDDRLVDLARENYDFAIRITETRPEDA-ITMKLGTVEHCLFASPDYLRGHPAPQSIDD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KH L+ FG       E         +   +P    L  NS   ++   + G GI+ LP
Sbjct: 188 LPKHRLLHFGWARRTVWEFQTQKGKRQQIEFQP---ALNSNSGTFLLDATIQGHGISRLP 244

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCY 273
           D+IV +      LV ++ D+  P++ +Y  +
Sbjct: 245 DFIVTEALAAGKLVPLLPDIAVPAWGIYLLH 275


>gi|148547499|ref|YP_001267601.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511557|gb|ABQ78417.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 310

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++
Sbjct: 1   MDM-LHAMRTFTRVVECGSFAAAANALDISAAQVSRIVAELENQLQTRLLHRTTRRLRMS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++    E    E + + + P G LR+     +G  LL   +  +  LYP
Sbjct: 60  EAGERFLERARQIMLLTEEAVGEARGAHLTPRGHLRLHCPHGMGL-LLMPLVAGYNTLYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L L  ++ D   +  D  I +   +  S LI   L  I     AAP YL     P
Sbjct: 119 EVVIELTLSQRNPDPLAEGHDVVITVDGALPDSQLIAVPLGNIFSIPCAAPGYLDTHGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  +      P    D+ +   VD+ +  P  S    N   +++    LG G
Sbjct: 179 ERPEDLHGHRCLRMA--YPMYEGDWVFPQGVDQCVIAPNDS-FSTNVADAMLVASELGMG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I LLP Y      +   L R++         +Y  YP       K++ + +++  + 
Sbjct: 236 IGLLPFYTASEAIEQGRLRRLLAPYRLRESALYAMYPSRHYLDAKVRTWIDYLKEQL 292


>gi|22127421|ref|NP_670844.1| transcriptional regulators [Yersinia pestis KIM 10]
 gi|45442713|ref|NP_994252.1| LysR family regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108809150|ref|YP_653066.1| LysR family regulatory protein [Yersinia pestis Antiqua]
 gi|108810659|ref|YP_646426.1| LysR family regulatory protein [Yersinia pestis Nepal516]
 gi|145597726|ref|YP_001161802.1| LysR family regulatory protein [Yersinia pestis Pestoides F]
 gi|150260336|ref|ZP_01917064.1| LysR-family regulatory protein [Yersinia pestis CA88-4125]
 gi|165925035|ref|ZP_02220867.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165937834|ref|ZP_02226395.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008721|ref|ZP_02229619.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212176|ref|ZP_02238211.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398889|ref|ZP_02304413.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419249|ref|ZP_02311002.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167426396|ref|ZP_02318149.1| LysR-family regulatory protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167466783|ref|ZP_02331487.1| substrate-binding transcriptional regulator, LysR family protein
           [Yersinia pestis FV-1]
 gi|170022858|ref|YP_001719363.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|218927825|ref|YP_002345700.1| LysR family regulatory protein [Yersinia pestis CO92]
 gi|229837308|ref|ZP_04457471.1| LysR-family regulatory protein [Yersinia pestis Pestoides A]
 gi|229840522|ref|ZP_04460681.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842933|ref|ZP_04463084.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900851|ref|ZP_04515975.1| LysR-family regulatory protein [Yersinia pestis Nepal516]
 gi|270487773|ref|ZP_06204847.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|21960511|gb|AAM87095.1|AE013957_10 putative transcriptional regulators [Yersinia pestis KIM 10]
 gi|45437579|gb|AAS63129.1| LysR-family regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108774307|gb|ABG16826.1| LysR-family regulatory protein [Yersinia pestis Nepal516]
 gi|108781063|gb|ABG15121.1| LysR-family regulatory protein [Yersinia pestis Antiqua]
 gi|115346436|emb|CAL19308.1| LysR-family regulatory protein [Yersinia pestis CO92]
 gi|145209422|gb|ABP38829.1| LysR-family regulatory protein [Yersinia pestis Pestoides F]
 gi|149289744|gb|EDM39821.1| LysR-family regulatory protein [Yersinia pestis CA88-4125]
 gi|165914246|gb|EDR32862.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923235|gb|EDR40386.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992060|gb|EDR44361.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206922|gb|EDR51402.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963243|gb|EDR59264.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051393|gb|EDR62801.1| LysR-family regulatory protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054619|gb|EDR64426.1| LysR-family regulatory protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749392|gb|ACA66910.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
 gi|229682190|gb|EEO78282.1| LysR-family regulatory protein [Yersinia pestis Nepal516]
 gi|229689999|gb|EEO82057.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696888|gb|EEO86935.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705431|gb|EEO91441.1| LysR-family regulatory protein [Yersinia pestis Pestoides A]
 gi|270336277|gb|EFA47054.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|320016810|gb|ADW00382.1| LysR-family regulatory protein [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 310

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +  F  V  +GSFT AA+ L L ++ +S+++S LE  +G++L  R  R L LTE
Sbjct: 1   MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +++  +  L+  SV+P GKLR+   + + + ++  +L EF   YP+
Sbjct: 61  DGQAYFAKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L   ++   +  +  DCAIR    ++ SS I R +  +H+  YAAP YL+      
Sbjct: 121 ISVRLGGSDRISHLLDNGIDCAIR-GGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             QEL  H  I++          F W L +       P    L  +     +  C+ GSG
Sbjct: 180 HPQELSVHRRISW---FTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I     + V+       LV ++      +  ++  YP     + +++ F ++
Sbjct: 237 ICPGAPFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDW 288


>gi|91792460|ref|YP_562111.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91714462|gb|ABE54388.1| transcriptional regulator, LysR family [Shewanella denitrificans
           OS217]
          Length = 307

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 129/305 (42%), Gaps = 12/305 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L +F   A  GS T AA+ L +S ++ S  +  LE ++   LF R  R L LT +
Sbjct: 1   MNTQDLALFVRTADCGSITAAAQALDMSTAAASAAVKRLEKQLNSTLFIRSTRQLRLTTE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        +    L   Q  ++    + +G++RI+   DLG+NLL   + + +  +PD+
Sbjct: 61  GEHFLLHCRKALDTLAAGQASMEALQGRIAGEVRISAPSDLGRNLLLPWIDDIMDEHPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ LI+ +   D   D  D A+R  +P   SS++   +  +     A+P YL     PL+
Sbjct: 121 RLHLIIGDSLADFYHDRIDLALRYGRP-NDSSMVAFNIANVERIICASPSYLSRFGMPLT 179

Query: 183 IQELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQV------NSYLSIMQY 234
             +L  HN + +   D      E      T      EP    ++V      N    + ++
Sbjct: 180 PADLADHNCLLYHLNDRPFDLWEFETKSPTGTTGEREPEQFKIRVKSNRCCNDGDLVHRW 239

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G GIA      V  +     LV+++ D  +P   +    P   + T  +   R+ + 
Sbjct: 240 ALAGKGIANKSRLDVNHDLAAGRLVKLLPDYHSPQKELNLLCPSRSQVTPTVLLLRDMLR 299

Query: 292 LKARD 296
            K + 
Sbjct: 300 DKFKQ 304


>gi|297580054|ref|ZP_06941981.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535700|gb|EFH74534.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 312

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +PSG L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMLNAAQQAIEISSSEHAEPSGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+   +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPVHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALTAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|325277813|ref|ZP_08143367.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097059|gb|EGB95351.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 310

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 125/297 (42%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++
Sbjct: 1   MDM-LHAMRTFARVVECGSFAAAANALDISAAQVSRIVAELENQLQTRLLHRTTRRLRMS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++    E    E + + + P G+LR+     LG  LL   +  +  L P
Sbjct: 60  EAGERFLERARQIMLLTEEAVGEARGAHLTPRGRLRLHCPHGLGL-LLMPLVAGYNALCP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L L  ++ D   +  D  I +   +  S LI   L  I     AAP YL+    P
Sbjct: 119 EVVIELTLSQRNPDPLAEGHDVVITVDGALPDSQLIAVPLGNIFSIPCAAPAYLEANGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S ++L  H  +      P    D+ +   VD+ +  P+      N   +++    LG G
Sbjct: 179 ESPEDLHGHRCLRMS--YPMYEGDWVFPQGVDQCVIVPK-DGFSTNVADAMLVASELGMG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I LLP Y          L R++         +Y  YP       K++ + +++  + 
Sbjct: 236 IGLLPFYTASQAIGQGRLCRLLAPYRLRESALYAIYPSRHYLDAKVRTWIDYLKEQL 292


>gi|73537322|ref|YP_297689.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72120659|gb|AAZ62845.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 307

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 4/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   A +GSF+ AA +L L+ +++S+ ++ LE  +G++LF+R  R LTLT  G 
Sbjct: 4   LNLLESFVHSAETGSFSAAARRLGLTPAAVSKNVARLERHLGLRLFHRSTRRLTLTSGGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     S  +  L        E + KP+G L++   +  G+  L   L EFL LYP I  
Sbjct: 64  QFFSQVSNPFSALRDAFAGAAEDAGKPAGVLKVGMALAFGREYLVPLLGEFLALYPGIVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               +N+  D+  D  D AI     +    ++ R+L   H+ A A+P +++    P    
Sbjct: 124 DWHFENRPTDLIRDGFDAAIGGGIELT-EGVVARELARTHVVAVASPAFMQGKALPRHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L   + I         +  +     V         + L  +   ++    + G GIALL
Sbjct: 183 DLLAFDGIVRRSGATGRLRAWTLRNQVGEQAPAEHRARLIFDDPEAMAHAAMHGLGIALL 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P        ++  L+R++      +  +   YP       + + F  F+    R
Sbjct: 243 PMPHAAPRLESGALMRLLPGWYADNGPIALYYPSRTLLPPRTRVFIEFVVDAFR 296


>gi|33598521|ref|NP_886164.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33574650|emb|CAE39302.1| probable LysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 296

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 140/301 (46%), Gaps = 15/301 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  +G++L  R  R + LT
Sbjct: 1   MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERGLGMRLLNRSTRRIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +  +      +LQ+ + +P G+LRI+    L Q  L   + EF  LYP
Sbjct: 61  EAGALYFERCRHIVEEARVAHEQLQDMAAQPKGRLRISLPTSLAQLFLTDVIPEFRSLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+    L  + +D   +  D  +R  +    SSL+ R++V +  H YAAP YL    EP
Sbjct: 121 DIECDFDLSMRPVDPISNPFDLVLRFGQQ-PDSSLVARQIVLMTQHLYAAPQYLALHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
               +L  H  +      P   + F++  L + D+         L  N+   + +    G
Sbjct: 180 RVPADLGHHECLR-----PSMSDAFSYWVLQSGDKVERVQVSGRLAANNIGMLGRLASQG 234

Query: 239 SGIA--LLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI   ++ D +   ++    LVR++ D       ++   P  +    K +AF +FI  +
Sbjct: 235 LGITPLVMSDSMTRAIRQAG-LVRVLPDWALTPIPLFALMPSRM-VPAKTRAFLDFIQPR 292

Query: 294 A 294
            
Sbjct: 293 L 293


>gi|239820086|ref|YP_002947271.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239804939|gb|ACS22005.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 347

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 129/290 (44%), Gaps = 7/290 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF  AA++L + +S++SR +  LE ++ ++LF R  R  TLT +G   +  
Sbjct: 34  AFIAVVTEGSFARAADRLGIGRSAVSRSVQKLEDQLNVRLFLRTTRSTTLTREGDLFYAN 93

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                 ++     E+++     P G LRI   +  G+ ++   L EF   YP++ I L+L
Sbjct: 94  CHTGVDRIVQAVEEMRDLRQGPPRGHLRINAAVGFGRRVVAPLLGEFRATYPEVTIDLLL 153

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++K  D + D  D A R  + ++ + +I ++++ + +   A+P Y      P S++ L +
Sbjct: 154 NDKPTDFTSDRVDIAFRNGR-MEDAQIIAKQIIPMQLLLCASPAYQVAHGLPDSMEALAQ 212

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  I F     +  E          P      + L  N    ++Q  + G GIA LP Y+
Sbjct: 213 HECINFRFSSGRIFEWE--FKVGGHPRKLVPQAKLTYNDADLVLQAVLDGHGIAQLPGYL 270

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +      LV  +          Y CY        +++ F +F+  K R
Sbjct: 271 ACEALRMGALVPCLTQYAPDDSGHYICYLSRQHLPSRMRVFIDFMTSKIR 320


>gi|206564415|ref|YP_002235178.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198040455|emb|CAR56440.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 302

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 129/302 (42%), Gaps = 7/302 (2%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+  +D L     F  V   GS T  A  L  + S +SR I+ LE  +G +L  R  R L
Sbjct: 1   MARKFDHLGDVEAFVTVVEKGSMTAGAVALGSTPSVLSRAITRLEARLGTQLLRRSTRRL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G      +   +  ++  +  +Q      +G +R++     G   L   L+ F  
Sbjct: 61  SLTEHGRLYLEQSRAAFLLIDDAERAIQGHGGTLTGHVRLSVPTTYGHYRLPPLLRRFTR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P ++++L + N+++D+  +  D AIRL + +  S L+ RKL    +   A+P Y+ + 
Sbjct: 121 EHPHVRVELNIANRNVDLVAEGFDLAIRLGE-LPDSGLVARKLEDAALCLVASPEYVAHA 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P ++ +L+ H  + F       +  + +          P  +    +  L ++     
Sbjct: 180 GTPGNVADLEHHLCLPFMLPSSGRIAPWVFRDGDQDIDWLPASNVAVSDDVLGVVSMAQS 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+GI    D+IV+D     +LV ++  +   +      Y    + +   +   + +   A
Sbjct: 240 GAGICQTYDFIVQDRIQAGHLVEVLPHLRGRTRPFSVVYAPHRRLSAASRNLIDMLVTSA 299

Query: 295 RD 296
            +
Sbjct: 300 SE 301


>gi|163859034|ref|YP_001633332.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262762|emb|CAP45065.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 299

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 126/297 (42%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V  SG FT AA +L +S S +SR ++ LE  +G++L  R  R +  T+
Sbjct: 1   MDRLHAMKTFVAVVESGGFTAAARKLDVSLSVVSRIVTELEAHLGVRLLTRTTRVVRPTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  ++E   +    +   P G L +   +  G   +   + E+L  YP+
Sbjct: 61  TGAAYFENCKRILGEIEEADLAAAGTHAAPRGSLVVTAPVLFGARHVTPIVVEYLQRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +  +L +++I+   +  D  IR+ + + SS+L    +  +     AAP YL+    P 
Sbjct: 121 VDVHCVLVDRNINFIDEGVDVGIRIGE-LPSSTLQAILVGRVRRVVCAAPAYLQRHGLPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H LI    +       F        P        L  ++  S +   V G G+
Sbjct: 180 TLDDLQRHTLIQTTGVNTLPEWRF---MEQGEPRPLRIAPRLATSTNDSAISAAVAGLGL 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A +  Y V     +  L  ++ +   P   ++  + E      K++AF +    + R
Sbjct: 237 ARVLSYQVAAELHDGRLRVVLAEYEPPPVPIHVIHREGRHAMRKVRAFLDLAIDRLR 293


>gi|160877462|ref|YP_001556778.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160862984|gb|ABX51518.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315269664|gb|ADT96517.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 318

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA+ GSFT AA+ L ++ S++S+ I  LET +G KL +R  R ++LT  G   
Sbjct: 20  EIRHFVTVAQLGSFTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSY 79

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        L+  Q  L      PSG++R+   +  G+  +   L      YP +++ +
Sbjct: 80  LKDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLSLSQKYPKLELSI 139

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++  D+  D  D A+R+ +   +  L+ R+L        A+P Y      P    +L
Sbjct: 140 TFNDRATDLFNDGIDLAVRVGQLGDTVDLVARRLGEQRRVICASPAYFARLGTPKDKADL 199

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I    +     +   WL   +  I E        ++    +I+   + G G+A +
Sbjct: 200 SQHQCI----VGWPLGQQHRWLLKNEDGIIEAYDIPVRHEIADCEAILAATLAGVGLAQV 255

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P ++V+D      L+ +++++ +    ++  + +      KL+     +   A+
Sbjct: 256 PIWLVEDYLKTGELISVLDELASDDTPIHLIWLKTPYLQPKLRVIIEELAELAK 309


>gi|332994769|gb|AEF04824.1| transcriptional Regulator [Alteromonas sp. SN2]
          Length = 296

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 13/292 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VA    F+ AA+QL  S S ISRQ++ LE  VG  L  R  R + LTE G+  ++  
Sbjct: 10  FVAVAERKGFSAAAKQLGCSTSHISRQVARLEERVGCVLLARSTRQVNLTENGALYYQHA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            ++   L+    ++    V   G LR+++     ++ +   L +F L +P++ + +  ++
Sbjct: 70  KDLLIGLQQANEQVSLQQVTLDGVLRVSSAGGFAEHAVAPALMQFALAHPELTVDMDFNS 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + ++   D  D  IR  + +  SSLI RKL+   M A A   YL    EP    EL KH+
Sbjct: 130 RMVNFVEDDVDFVIRYGE-LADSSLIARKLIERPMMAVATRDYLSQFGEPSHPSELKKHS 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            +   + +        W  + +  +   ++    + N+  +++  C  G GI  +P    
Sbjct: 189 CVISNNDV--------WKFSENGKLENIKVKGRWRSNNANAVLAACEQGLGIGYMPKSTF 240

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
               +   L  I++       + +  Y        +++   +++     DW+
Sbjct: 241 SASVEAGRLQPILQPYWGDGASSWIVYQNKRFMPLRVRMAIDYLVQYFTDWE 292


>gi|269960280|ref|ZP_06174654.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
 gi|269834891|gb|EEZ88976.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
          Length = 336

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G 
Sbjct: 31  LNDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGE 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ +YP++ I
Sbjct: 91  LFLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDVYPNVSI 150

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+     D AIR  +P   S+L+   L         A+P Y+ N       
Sbjct: 151 KLELSDSLTDMYTKPVDIAIRYGEP-ADSNLVVLALCGANERILCASPEYVANNPVLTKP 209

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L++HN + +  ++   + +   L   D          L  N      +  + G GIA 
Sbjct: 210 EDLNQHNCLCY--MVADSVYNKWTLTRGDETEQVVVSGKLLSNDSDLSHRLAIKGKGIAN 267

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +  +     LVR++ +       +Y    +    T  ++ FR FI  K
Sbjct: 268 KSLMDISQDLIEGRLVRVLPEWDCGPVPLYMVCADRRLLTPTIRTFREFIHEK 320


>gi|33596107|ref|NP_883750.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33601505|ref|NP_889065.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33573110|emb|CAE36754.1| LysR-family transcriptional regulator [Bordetella parapertussis]
 gi|33575941|emb|CAE33020.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 305

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 83/292 (28%), Positives = 129/292 (44%), Gaps = 9/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VAR+ SF+ AAE L + +S++SRQ++ LE  VG++L  R  R + LTE G    
Sbjct: 1   MELFVEVARTLSFSRAAENLAIPKSTLSRQVAELERSVGLRLLSRTTRRVELTEAGQLYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +      ELQ     PSG LR+    D G + L     EF   YP++   L 
Sbjct: 61  ERCQRIVAEARIAHEELQNLVETPSGPLRVNMPADFGTDFLSEAFTEFSRRYPEVTFYLD 120

Query: 128 L-DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L   +  +      D +I +   +  S+ I R L  +  H YA+P YL    EP    +L
Sbjct: 121 LASPEHAERVFQTCDVSIEIGD-LPDSTHIARLLGVLPAHLYASPDYLARHGEPQHPDDL 179

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL-P 245
            +H  I F     +       L + +R +     +   VNS   +     LG+GIA+L P
Sbjct: 180 PRHECIQFRAGTGRVTRWP--LNSGERHVEITPGNRFSVNSVSMVRNLATLGAGIAILAP 237

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              V+++     L RI+ D +   F VY    +      K + F  F+  + 
Sbjct: 238 MGNVREDIESGRLKRILPDWLAGPFPVYAVT-DTRMLPAKTRIFVEFLMERL 288


>gi|327485871|gb|AEA80277.1| Transcriptional regulator, LysR family [Vibrio cholerae LMA3894-4]
          Length = 312

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +PSG L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMLNAAQQAIEISSSEHAEPSGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P    +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPTHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALTAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|167585238|ref|ZP_02377626.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 320

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 137/294 (46%), Gaps = 8/294 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   + ++   YPD+ +++ 
Sbjct: 67  ERLVQALSELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMRAVTDYADRYPDVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+  YL+    P +I +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPSGLKSSSLVARQIATAHIMLVASSDYLEKRGTPQTIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +                A   R         L VN    +    + G+GIALL  
Sbjct: 187 AHHNYLRRDTNATMLDAMVTDAAAASRVNLN---GNLIVNHLEGLRAAVLGGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +V D+     LV ++ D + P    +Y  Y      + K+++F +F+  +  +
Sbjct: 244 EVVGDDLEAGRLVPVLLDAVPPRELPIYAVYASRRHVSAKVRSFVDFLAARFEN 297


>gi|114762392|ref|ZP_01441850.1| transcriptional regulator [Pelagibaca bermudensis HTCC2601]
 gi|114545010|gb|EAU48014.1| transcriptional regulator [Roseovarius sp. HTCC2601]
          Length = 309

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 114/288 (39%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + +F        F  AA +L +S S++S+ I+ LE  + ++L  R  R    T +G   
Sbjct: 7   DMHLFVAAVEEQGFAAAARRLAISPSTVSKAINRLEAALSVRLVDRDTRHFVATSEGLTF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +         ++  +  +  S ++  GKLR++ +    +  +   + EF   YP+I I  
Sbjct: 67  YHGCCRAIEAMQDAEASVSGSKLQAKGKLRVSVSASTAEARIGPMMHEFHAAYPEIDIAF 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L N  +D      D  I    P++  + + R+L    +   AAP YL+    P    +L
Sbjct: 127 HLRNGYVDPIEAGVDITISHEPPVRD-TFVARRLCYTPLLVCAAPSYLERRGRPQRPTDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN I     +    +             +P     + +    + Q  + G GIA L  
Sbjct: 186 RDHNCILSTREVFNTWQ----FEEAGELRPQPVHGAFRASQGSMLRQLALSGVGIANLMT 241

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           Y V+D+     LV ++          +Y  Y +      +++ F +F+
Sbjct: 242 YQVRDDLRAGRLVELLPRFRPTQGIPLYAVYHDRRNLNARIRCFVDFL 289


>gi|325292234|ref|YP_004278098.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325060087|gb|ADY63778.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 298

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 123/295 (41%), Gaps = 4/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + L  F +VA   +F   A++L +++S++S+ I  LE  +GI L  R  R ++LT
Sbjct: 1   MNVDLNALSTFCMVAEERNFRATADRLGVTRSAVSQTIRRLEETMGIALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L+   S     L          S  P G+LR+A +    + L    L  F  ++P
Sbjct: 61  EAGQQLYADVSPSISNLMQATQAASSLSGTPRGQLRLAVSSIAERFLSGPLLARFAEIHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q+ +++ +++ DI  ++ D  +RL + I    +           A  +P Y      P
Sbjct: 121 EVQLDIVVTDEEFDIVAEHYDAGVRLGELIAQDMIAVPVSGPQRQLAVCSPQYRDRVTLP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL  H  I +          +   A   R            N    +++    G+G
Sbjct: 181 TQPRELIHHKCIGWRPRPDVAPYRWE-FAENGREFAVAVQPDFTTNDMQLMIKLACAGAG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I    +   +   ++  LV ++ED        Y  YP       KL+AF + + L
Sbjct: 240 ITFGMEETFRPYLESGQLVSMLEDHSPTFAGFYLYYPNRRHLAPKLRAFIDHVRL 294


>gi|328470211|gb|EGF41122.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 311

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 129/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L LS ++++ ++  +E   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMTLFVSIVKHQGLAAAGRELGLSPATVTARLQAIEERYGVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+    +   ++ T+  LQ    +  G L+I+   D+G+ ++   +  F   YPD
Sbjct: 61  AGAMYHQACLNIIDSVKETENLLQTGISEVRGTLKISAPRDIGKQIISPMVSAFSEQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  S+LI RKL +      A+P YL     P 
Sbjct: 121 VTPYLYLNDNLSNLAESGLDLVIRYGE-LADSNLISRKLASSQRVLCASPDYLSKQGIPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
             Q+L  H  +    ++    E   W    +       ++  +  +    I Q+ + G+G
Sbjct: 180 CPQDLADHRCLA---MVRSNEELKTWHFKDEESHQTITVTPKRFSDDGEVIRQWALDGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDV--------ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     ++ +     LV +++                ++  Y        +++ F +F
Sbjct: 237 IALKSILDIQQDLKQQRLVTVLDGYMKNFSAFSQGAEADLHVIYQSRQYQPKRVRLFLDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LVEQ 300


>gi|156977706|ref|YP_001448612.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156529300|gb|ABU74385.1| hypothetical protein VIBHAR_06494 [Vibrio harveyi ATCC BAA-1116]
          Length = 301

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 135/298 (45%), Gaps = 16/298 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R ++LT+ G+  H
Sbjct: 1   MTLFVSIVKNQGLAAAGRELGLSPATVTARLQSLEDRYGVKLLNRSTRHISLTDSGAMYH 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   ++ T+  LQ  + +  G L+I+   D+G+  +   L EF  LYPD+   L 
Sbjct: 61  QACLEIIDSVKETENLLQTGTKEVRGTLKISAPRDIGKQYISPILSEFSQLYPDVIPYLY 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++   +++    D  IR  + +  S+L+ RKL +      A+P YL     P++ Q+L 
Sbjct: 121 LNDNLSNLAESGLDIVIRYGE-LADSNLVSRKLASSRRVLCASPQYLAKKGTPITPQDLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
           +H+ +    ++    E   W    +       +   +  +    I Q+ + G+GIAL   
Sbjct: 180 QHDCLA---MVRSNEELKTWHFQDEEQHNVITVVPKRFSDDGEVIRQWALDGAGIALKSI 236

Query: 247 YIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             V+++     LV ++   +        +    +   Y        +L+ F +F+  +
Sbjct: 237 LDVQEDIKQQRLVTVLNGYMKNFNASTSSAGADLNVIYLSRQYQPKRLRLFLDFLIER 294


>gi|24374979|ref|NP_719022.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24349705|gb|AAN56466.1|AE015783_9 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 307

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 127/302 (42%), Gaps = 13/302 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +  +VF  +   GS   AAE L +S+S ++R +S +E   G +L +R  R L+LT 
Sbjct: 1   MDRLEAAKVFVTIVERGSMIGAAEVLDMSRSMVTRYLSEMEEWSGARLLHRSTRRLSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    +         S +P G LRI+ +  +   +L   ++ +L  YP 
Sbjct: 61  AGEQVLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLILPTVVRPYLAQYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             +   + ++ +D+  +  D AIR+   +   SLI R+L        AAP YL +    +
Sbjct: 121 ASVNFHVSSQTVDLVAERIDMAIRITNEL-DPSLIARRLGECESVVCAAPRYLASHSPII 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--------PRISCLQVNSYLSIMQ 233
             ++L +HN +T+                V  P G+        P    L  N  + ++ 
Sbjct: 180 QPEDLTRHNCLTYSYFGDVMWRFTQINHLVTHPDGKSAGQQFNIPVKGNLSANDSMVVLN 239

Query: 234 YCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GIA+ P + VK   ++  LV ++ D    S  VY  Y         L+   + +
Sbjct: 240 ATLAGEGIAMQPVWAVKSYLNSGELVPLLRDFKPQSLGVYGVYQSRKHMQPTLRVMMDML 299

Query: 291 FL 292
             
Sbjct: 300 VA 301


>gi|296162751|ref|ZP_06845535.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887000|gb|EFG66834.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 306

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 130/296 (43%), Gaps = 7/296 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++    VA +G F+ AA+++ ++ SS++R +  LE  +G  L  R  R ++LT+ G   
Sbjct: 6   AIKTLLEVADAGGFSKAAQRIGVATSSVTRLMDSLEASLGTALLTRTPRKVSLTDAGIAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               ++V   L      + +S   P G LRI+      +  L  +L  FL   P + + +
Sbjct: 66  VEQVAKVLDDLAEADESVFDSGASPVGALRISVPSTYSRLRLAPHLAAFLSENPRVFLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +   D+++D  D AIR+    + +SLI +KL     +  A+  YL+    P + Q+L
Sbjct: 126 VVADHFADLALDRIDVAIRIGLADRDASLIVKKLADNPRYVVASHDYLERNGTPQTPQDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  + F                 D          L  N+   +++  + G GIALLP+
Sbjct: 186 AEHECLRFAYGGGYRTHQTWTFRREDAGQRVDVHGHLLSNNLDILLEAVMAGRGIALLPE 245

Query: 247 YIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + V  +     L+R+ E            VY  Y    + + K++A   F+  + R
Sbjct: 246 WQVAADIRAGRLLRLFEHFDASPQAGDAVVYAAYLPNRRQSSKVRALVQFLETRLR 301


>gi|261252521|ref|ZP_05945094.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260935912|gb|EEX91901.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 305

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 139/309 (44%), Gaps = 18/309 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++ GLE   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMTLFASIVKNQGLAAAGRELGLSPATVTARLQGLEERYGVKLLNRSTRHISLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+   E+   +  T+  LQ    +  G L+I+   D+G+  +   L EF  L+P+
Sbjct: 61  SGAMYHQACLEIIDSVNETENLLQTGMKEVRGTLKISAPRDIGKQYISPLLSEFSQLHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  S+LI RKL +      A+P YL     P+
Sbjct: 121 VVPYLYLNDHLSNLAESGLDVVIRYGE-LADSNLISRKLASSRRVLCASPQYLAKRGTPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           +  +L +H+ +    ++    E   W    +       ++  +  +    I Q+ + G+G
Sbjct: 180 TPSDLAQHDCLA---MVRSNEELKTWHFQDEGQHRVITVAPKRFSDDGEVIRQWALDGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+++     LV ++   +        +    +   Y        +L+ F +F
Sbjct: 237 IALKSILDVQEDIKQQRLVTVLNGYMKNFSAAASSAGADLNAIYLSRQYQPKRLRLFLDF 296

Query: 290 IFLKA-RDW 297
           +  +  RD+
Sbjct: 297 LIERFERDF 305


>gi|229526553|ref|ZP_04415957.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|262192075|ref|ZP_06050238.1| transcriptional regulator [Vibrio cholerae CT 5369-93]
 gi|229336711|gb|EEO01729.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|262032057|gb|EEY50632.1| transcriptional regulator [Vibrio cholerae CT 5369-93]
          Length = 312

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P    +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPTHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALTAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|213161254|ref|ZP_03346964.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427398|ref|ZP_03360148.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213585942|ref|ZP_03367768.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213648257|ref|ZP_03378310.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 307

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 125/291 (42%), Gaps = 6/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F ++A + SFT AA QLH+S S++S+ +  LE E+G+KL  R  R + LTE G    
Sbjct: 9   LHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLEDELGVKLLNRTTRRVGLTEAGHAFL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                  + ++       +S   P G LR+         LLQ NL  F+  YPDI++ + 
Sbjct: 69  ASIRPALNHIDEAMEHACQSRDIPGGTLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDID 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLSIQEL 186
           +++  +D+  +  D  IR    +Q    +   L  +      A+P YL     PL  QEL
Sbjct: 129 VNDGFVDLINERFDAGIRFGDAVQLDMNVV-PLGDVLRPAIVASPAYLARFGTPLHPQEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +         +  + ++    R    P  + L VN     +     G+ +  + +
Sbjct: 188 INHRCLCHRFTRESGLYRWEFVHGAQRLEITPE-AALMVNDKALRLSAARDGAELTYVFE 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             V +   +  L  ++E+ +  +   Y  YP       KL+ F ++   KA
Sbjct: 247 QDVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFCHKA 297


>gi|186897033|ref|YP_001874145.1| putative DNA-binding transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|186700059|gb|ACC90688.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
          Length = 303

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 128/291 (43%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA +L  S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKQMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI+ +  + QN+L     + L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQQVHEQLYAFNNTPTGTLRISCSSTMAQNVLATMTADMLKAYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q+S L  R+L  + M   AA  YL     P    
Sbjct: 124 NLVAGIPAPDLIADGLDVVIRVGA-LQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPAKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMANFSWLEYNVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLKAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGEVEILFKHYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|330971177|gb|EGH71243.1| transcriptional regulator, lysr family protein [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 296

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 134/296 (45%), Gaps = 11/296 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VA+  SFT AA +L +SQS++S  +  LE  +G++L  R  R ++ TE G +L
Sbjct: 8   DLLAFLAVAKERSFTKAAARLGVSQSALSHTVRSLEARLGLRLLTRTTRSVSPTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +     + ++E     L +    P+GK+RI         +++  LK FL  YPDI +++
Sbjct: 68  IQKVGPHFDEIEIELAGLSDLRDTPAGKIRINAMDHSLDLIIRPVLKTFLHKYPDISVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             D   +DI+ +  D  +RL + +    +  R    + +    +P Y +   +P + ++L
Sbjct: 128 CCDYSFVDIAAEGFDAGVRLGEAVADGMIATRIGPDMRLSVVGSPAYFEGRTKPETPRDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H        +P     + W    D      R++  +  N    ++   + G G++ +P
Sbjct: 188 TAHRC--NNLRLPTNGGLYAWEFAKDSETLNVRVTGQVTFNGVYPLLDAALDGFGLSYIP 245

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +V ++     L++++ED        +  YP   + +    AF   + L+A  ++
Sbjct: 246 HDLVAEHIEAGRLIQVLEDWSPTFAGFHLYYPSRRQASP---AFA--LLLEALRYR 296


>gi|70731062|ref|YP_260803.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345361|gb|AAY92967.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 305

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 136/296 (45%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + L++F V A+ GSF+ AAEQL  + S++++ ++ LE E+G +LF R  R + LTE
Sbjct: 1   MDKLNALKMFVVTAQLGSFSRAAEQLGKTPSALTKAVNHLEAELGSRLFERSTRRIVLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        +V  +LE    E+++      G L++   +  GQ  L      FL  YP 
Sbjct: 61  IGRLYLETARQVLQRLEEVGEEVEQLQHGLRGNLKVTAPLAYGQAFLDQVCGGFLEQYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +Q+ L ++ +++     D A+R         LI R + +  +   A+P YL     P+
Sbjct: 121 INLQVDLCDEFVNLLESGYDLALREGHD-DLPGLIARVVGSNRLALCASPAYLARKGRPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q L++H  + +   +      +         + +P+   L+ ++Y  ++   + G G+
Sbjct: 180 TPQTLEEHEWLLYRHPLLSREFWWVERDGQRLSLPQPQAPRLRSDNYDLLLANALAGRGL 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVY----FCYPEALKNTGKLKAFRNFI 290
              P +       +  LVR+M D      +        YP   + T K++AF +++
Sbjct: 240 LHTPLWSAAPYLADGRLVRVMADYAIDPDSFGPHILAVYPSHRRATAKVQAFIDYV 295


>gi|312173602|emb|CBX81856.1| Uncharacterized HTH-type transcriptional regulator ycaN [Erwinia
           amylovora ATCC BAA-2158]
          Length = 293

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 131/294 (44%), Gaps = 18/294 (6%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+F     + +F +VA  GSFT AA +  L +SS+S++I+ LE  +G++L  R  R L L
Sbjct: 1   MAFKQLQDMALFALVAGCGSFTAAATRAGLPKSSVSQRINQLEQTLGLRLINRTTRQLNL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G +      E+    E   + ++     PSG+LRI +   +   LL      F   Y
Sbjct: 61  TFAGERYLVHCQEMVQASERAGLAIERLRDNPSGRLRITSPAGIAATLLARVNTAFQQKY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ +++ + ++  D+     D A+R  KP Q SSLI R++        A+P YL +   
Sbjct: 121 PDVTLEVSVSDEMCDLVQSRFDVALRTGKP-QDSSLIGRRIGDGQRRLVASPGYLADYPP 179

Query: 180 PLSIQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               ++L +H  I        L+ +  E + WL                 ++ L   +  
Sbjct: 180 LAHPRQLSEHRCIAHRAWNEWLLQRNDEYYRWLL----------PPTHMTDNLLYARECA 229

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +   GI LLP ++  +   LV+++         ++  YP    N+  L  F +F
Sbjct: 230 LSSGGITLLPRFLCCE--KLVQVLPAWEVEGNELWLVYPSRKLNSPALSRFVDF 281


>gi|238909680|ref|ZP_04653517.1| possible LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 303

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARNPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|254224788|ref|ZP_04918404.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125622851|gb|EAZ51169.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 312

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L IA       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPAGALTIAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P    +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPTHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALAAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|332529772|ref|ZP_08405726.1| transcriptional regulator, LysR family protein [Hylemonella
           gracilis ATCC 19624]
 gi|332040793|gb|EGI77165.1| transcriptional regulator, LysR family protein [Hylemonella
           gracilis ATCC 19624]
          Length = 302

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 129/299 (43%), Gaps = 7/299 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    L  F  VA   S T AA  L ++ +++S+ I  LET +G++LF R  R + L
Sbjct: 1   MQSDVLAALAAFEQVAAHRSLTQAAHALGVTPAALSQTIKKLETRLGVRLFERTTRSVNL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +E G       +     L+    +LQ S+    G LR+  +   GQ L++  L EF   +
Sbjct: 61  SEAGHAYLARVAPALASLKAATEDLQSSAGVEGGTLRLTLSYMAGQFLIEPLLPEFFARH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I ++L+ D+  +DI  D  D  +R+ + ++   +         M   A+P YL+    
Sbjct: 121 PHIGLELMYDDGFVDIVRDGLDLGMRIGESLERDMVAVPLTREFRMRCVASPAYLREFGT 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P    EL  H  I +   +      + W   VD  I E  +   L +  + + +   V G
Sbjct: 181 PRHPDELAAHRCINY--RMRSSGAIYKWEFLVDGVIVEYAVRGPLVITHWQTSLNAAVAG 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIA+  D  + +      LV ++ +       +Y  +P+      K + F +F+  + 
Sbjct: 239 LGIAMGWDLTLAEPLRTGALVEVLPEYSAGFPGLYAYHPQQAHLPVKTRVFLDFLRERL 297


>gi|222102135|ref|YP_002546725.1| Transcriptional regulator [Agrobacterium radiobacter K84]
 gi|221728252|gb|ACM31261.1| Transcriptional regulator [Agrobacterium radiobacter K84]
          Length = 346

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 8/300 (2%)

Query: 2   SFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
               D+L   R+F  V  +GSF  AA +L  S    S+ +S LE  +G++L  R  R L+
Sbjct: 39  DLHLDRLECDRMFIAVIDTGSFAAAATRLGTSAGQASKLVSRLEANLGVQLIMRTTRALS 98

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           L+E G   +     +  + +     ++ +S  PSG+LRI   +  G   L   L +F   
Sbjct: 99  LSEAGRAYYERIKTLLEEFDDLDASVRNASGVPSGRLRITAPLTFGTTQLASVLIQFATA 158

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +PDIQ+ +   ++ +++  +  D AIR+ +  + SSLI RKL  I +   AAP YL    
Sbjct: 159 FPDIQLDVSFSDRIVNLVDEGFDAAIRIGRA-EDSSLIARKLCAIRVVLVAAPSYLDGRG 217

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P     L  H+ I   +        F   A   +PI       +Q ++  + +     G
Sbjct: 218 MPAEPAHLAHHDCIIDTNFRDPLTWRFKHHADP-QPILADVHGRIQFSNAEACVAAAEAG 276

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIA  P ++         +  ++ D       +Y  YP       K++   +F+    R
Sbjct: 277 LGIARAPSFVAGARLRAGAVRPVLSDFEDEPRGLYAVYPPGRHLALKVRVLVDFLANAFR 336


>gi|152983043|ref|YP_001352606.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151283120|gb|ABR91530.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 302

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 123/299 (41%), Gaps = 13/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F   AR  SF+ AA +L+++ +++ +Q+ GLE  +G  LFYR   G   L  T+
Sbjct: 7   LNALRAFEASARHQSFSAAATELNVTPAAVGQQVRGLEEWLGTPLFYRSGTGTSRLMPTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + KL      L+++S    G L +  +       L   +  F   YP 
Sbjct: 67  TAQRALPDIRAGFDKLSIGLERLKQAST--GGALTVTVSPAFAAKWLMPRIDRFHQAYPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L  + K +D      D  +R         L   KL    ++   +P YLK     +
Sbjct: 125 TDLRLDTNLKALDFLASGIDVGVRYGSG-DWPGLAAIKLADEEIYPVCSPSYLKRHGPFV 183

Query: 182 SIQELDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               L  H LI    +   P      +WL     P  +     LQ+N+  +++Q  +   
Sbjct: 184 DPAALAGHTLIHDLSMQNHPGFQTWRSWLDAAGFPSVQSERG-LQINNSAAVLQAAIDNQ 242

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIAL    +++++     LVR+ E + +PS    Y  Y        ++ AFR ++  + 
Sbjct: 243 GIALGRSVMMREDLTVGRLVRLFETISSPSKLAYYIVYRPECAELPRVAAFREWLMSEV 301


>gi|153826401|ref|ZP_01979068.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|149739879|gb|EDM54070.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
          Length = 315

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 126/289 (43%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  
Sbjct: 8   QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +   Q E+++   + +G +R+  +   G   +   L++    YP++ +++
Sbjct: 68  YAQCRELLTIVTNAQSEMEDQRDEVAGLIRLGLSQSFGTLHVLPALEQLRQQYPELNVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++        A+P YL     P     L
Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASPDYLLRYGSPTEPMAL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + +        +   W  + D      +++    V+   ++    V G GIA L 
Sbjct: 187 MEHNCLIYRS---WERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y+++D      L++++ +         Y  YP       K  A   FI
Sbjct: 244 TYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFI 292


>gi|302060444|ref|ZP_07251985.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
          Length = 304

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 130/299 (43%), Gaps = 11/299 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               + +F +V  + SFT A ++L +S S + + +  LE  +G++L +R  R + LT +G
Sbjct: 3   SLGSIALFVLVTETRSFTLAGKRLGISSSGVGKSVGRLEESLGVRLVHRSTRSIALTLEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  +L+  Q+EL  +   P G+LRI+  +     L+   + +F+  YP+I+
Sbjct: 63  SIFLDRCRRILSELDAAQLELSNARDLPKGRLRISVPLVF--GLVMPVVIQFMRTYPEIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++ +DI  +  D  +R  +P   S L+ +++ +  +    +P Y      P   
Sbjct: 121 LDIDFSDRMVDIIDEGFDVVLRTGEP-SDSRLMSKRMGSFQLCIVGSPDYFARHGLPEQP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +          E +           E     +  N+   +++    G GI  
Sbjct: 180 ADLIHHACLQHKFPSTGKFEHWPLRREPGSEDFE-LPQTMVCNTTEVLVEVARAGLGITC 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF----IFLKAR 295
           LPD+++        L+ I+ D    + +    +  +   + +L+ F +F    +F  AR
Sbjct: 239 LPDFMLASAIRKGELIPILSDYTLHTGSFRLFWASSKHLSVRLRVFIDFMHANLFAPAR 297


>gi|160876413|ref|YP_001555729.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160861935|gb|ABX50469.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315268603|gb|ADT95456.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 314

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 122/308 (39%), Gaps = 19/308 (6%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT 
Sbjct: 1   MDRLEAAKVFVTIVERGSMISAANALDMSRSMVTRYLSEMEEWSGARLLHRSTRSLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +             S   P G LRI+ +  L   +L   ++++L  YP 
Sbjct: 61  AGEQVLDYCHRLLELANEVPAVSHASVAIPRGLLRISCSQFLAHQILAPVVRQYLASYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             + + + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      +
Sbjct: 121 ASVNIHVSSQTVDLVAERIDLAIRITNEL-DPNLIARRLGECESVVCAAPSYLAARAAVV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--------------DRPIGEPRISCLQVNS 227
             ++L +HN +T+          +                     +    P       N 
Sbjct: 180 HPEDLTQHNCLTYSYFGDVMWRFYQADVAAKQAQAPNSDPKLNQGQAFNVPVNGNFSAND 239

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y         L+
Sbjct: 240 SMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVYQSRKHMQPALR 299

Query: 285 AFRNFIFL 292
              + +  
Sbjct: 300 VMMDMLVA 307


>gi|91783116|ref|YP_558322.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687070|gb|ABE30270.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 298

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 131/295 (44%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R+   +   GSF  AA  L + +SS+++ I  LE  +G +L  R  R +  T 
Sbjct: 1   MDRIDAMRLLVRIVERGSFAAAARDLDVPRSSVTQGIQELERRLGAQLLQRTTRQVRPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   +E  +     +  KPSG +R+     L +  +   L  FL  YPD
Sbjct: 61  DGEAFYRRCLGIIADVEEAEAAFNGA--KPSGLVRVDVHGTLARYFMMPALPSFLDTYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+Q+   ++ +D++ D  DC +R+ + +  SSL+ R++  +    +A+P YL     P 
Sbjct: 119 IQVQISEADRLVDLTRDGVDCVLRVGE-LPDSSLVGRRIAMLKQGTFASPEYLARHGVPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L+ H ++ +   I   +    +L    R       S + V    + +    LG G+
Sbjct: 178 HPAQLEGHRMVGYLSQITGEIIPLEFLVAGKRQSMTLPASVM-VTGAETNISAARLGLGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +P Y V D+     L  ++         V+  Y    + + +++ F +++  +
Sbjct: 237 VQVPRYRVADDLSAGTLAEVLGKFPPRPLPVHVLYTRTPQLSPRVRVFVDWLAKE 291


>gi|87118324|ref|ZP_01074223.1| Transcriptional regulator [Marinomonas sp. MED121]
 gi|86165958|gb|EAQ67224.1| Transcriptional regulator [Marinomonas sp. MED121]
          Length = 301

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 124/296 (41%), Gaps = 12/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V    SF+ A E+L+L+ SSISR I+ LE   G KL  R  R + L  +G+
Sbjct: 10  LTEMAVFVAVVEHESFSKAGEKLNLAPSSISRSIAKLEAAFGTKLLERTTRKVKLNPKGA 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++      +    +      Q  + + SG LR+A      + ++     +F   YP +++
Sbjct: 70  QVFEQCQSMLASAKLAANVAQSMAGEVSGVLRVAAPKAFAKQVISPIALDFAEAYPKVRV 129

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L+  +  ID   D  D  I     PI+   L+ + L T  +   A+P YL     P + 
Sbjct: 130 KLMAVDHFIDPISDEVDVIIHFTQHPIE--GLVAKHLSTTTLILCASPDYLAKNGIPKTP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ IT G++    +  F         I         VN         + G GIA 
Sbjct: 188 DDLTQHDCITLGEVAGDDIWRFQ---KGGEKIKVQVAEAFSVNHTQIRRDAALRGLGIAS 244

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLK 293
            PD+ +++      L+ I+ D          +   Y ++     +++ F  F+  +
Sbjct: 245 FPDFAIQETIARGELIPILSDWQVLERYQGDIVAQYAQSKFVPVQIRTFIEFLHAR 300


>gi|332999820|gb|EGK19404.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-272]
 gi|333015688|gb|EGK35027.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-227]
          Length = 310

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVVLTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P  +QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQLLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|326404632|ref|YP_004284714.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325051494|dbj|BAJ81832.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 305

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 123/286 (43%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF      GS   A  +  LS S   + +S +E ++G++L  R  R L LT+ G    
Sbjct: 7   MSVFVAAVEEGSLVGAGRRFGLSPSMAGKHVSAIEDQLGVRLLQRSTRVLKLTDVGQAYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +    E    E Q +     G LR+A     G   L   +  +L  YP++ ++  
Sbjct: 67  KRCKLILEDYEDANREAQRAHQTVRGVLRVAAPTTFGAIHLGPVVARYLAAYPEVTVETT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+ M+  D AIR+ + ++ S L+ ++L   HM   AAP +L     P ++++L 
Sbjct: 127 LSDRYVDLLMESIDVAIRIGR-LKDSDLVAQRLAPCHMVFCAAPSFLARHGVPKTVEQLR 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +   + F + +     D+       R         L VN+   ++   + G G+A  P +
Sbjct: 186 QAPRVAFTEAVSAG--DWTLTDPSGRTHLIDGPLRLAVNNMQMLLAAALAGIGVAYGPSF 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +   +  L  +M    T    ++  YP     + KL+ F   +
Sbjct: 244 VFGESIASGTLQILMSQHKTSELAIHAIYPTKRHVSLKLRRFIEHL 289


>gi|315181895|gb|ADT88808.1| hypothetical LysR-family transcriptional regulatory protein [Vibrio
           furnissii NCTC 11218]
          Length = 300

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 129/287 (44%), Gaps = 11/287 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA + SFT  A++L +S+  ++R I  +E+ + ++L  R  R ++LT  G +   
Sbjct: 8   KVFIDVATTNSFTATADRLEMSRPMVTRYIDAMESWLNVRLLNRTTRKVSLTTAGEECLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +    + E  Q  L        GK+R+AT++  G + L   +  FL  +P ++I + +
Sbjct: 68  EVALWVDQAEGLQHRLLNRDE-LRGKVRVATSMSFGFSQLIPAVNSFLAEHPQVEIDIDV 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++  D+  +  D AIR+       SLI R++        A+P YL+N  +  +  +L +
Sbjct: 127 QDRAADLVTERIDLAIRIAAN-PDPSLIGRRIGRCDSVLVASPDYLENASDIRTPADLAQ 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  + +     K  +   W  T         + C L  N   +++   VLG G+++ P Y
Sbjct: 186 HRCLGY-----KNFDRHVWNLTRGSEQAAVEVHCALTANEATTLLSAAVLGMGVSMQPTY 240

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V+       LV ++         +Y  YP        +++  + + 
Sbjct: 241 LVQSALARGELVPVLAQWQPNVMDIYALYPSRKHLAPAVRSLIDHLV 287


>gi|269965803|ref|ZP_06179898.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|269829538|gb|EEZ83777.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 334

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G 
Sbjct: 31  LNDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGE 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T +    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I
Sbjct: 91  LFLDKTMQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSI 150

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+     D AIR  +P   S+L+   L  +      A+P Y+    E  S 
Sbjct: 151 KLELSDSLTDMYTKPVDIAIRYGEP-ADSNLVVLALCGSNERILCASPEYVATHPELASP 209

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN + +  ++   + +   L              L  N      +  + G GIA 
Sbjct: 210 ADLTQHNCLCY--MVADSVYNKWTLTRGSEKEQIVVSGNLLSNDSDLPHRLAIKGKGIAN 267

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +  +     LVR++ +       +Y    +    T  ++ FR+FI  K
Sbjct: 268 KSLMDISRDLIEGRLVRVLPEWDCGPVPLYMVCADRRLLTPTIRTFRDFIQQK 320


>gi|254505464|ref|ZP_05117611.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219551581|gb|EED28559.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 313

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 126/295 (42%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  SG F+ AA+ L +  + +SR +  +E ++G+ +  R  R + LT++G +
Sbjct: 26  DDLEILLAVVDSGGFSAAADTLDIQVARVSRAVGKVEKQLGVSILNRTTRRIELTDEGRQ 85

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +++  + EL      P G+LR+        + L   + +F   YPDI+++
Sbjct: 86  FIDSIRLGLTQIQRAEEELISRGELPKGRLRVDAASPFVLHQLVPLIGDFQAQYPDIELE 145

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ + +  S+L  R L    +H  A+P YL    +P +  +
Sbjct: 146 LSSNEGFVDLLEKKTDVAIRIGQ-LSDSTLHARPLGRSQLHLVASPDYLAKRGQPHTTAD 204

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I F               ++           L  ++  ++ Q  + G+GIA L 
Sbjct: 205 LIHHATIGFSGPKALNQWPLKGFQSLQ--------PTLTSSNGEAVRQLALAGNGIACLS 256

Query: 246 DYIVK---DNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++V    +   L+ ++E           V   Y ++     ++ AF +FI  K 
Sbjct: 257 GFMVNSDIEEGRLIPVLEHEKISRTGRELVNAVYYKSSNVARRISAFIDFIQPKL 311


>gi|171322258|ref|ZP_02911098.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171092419|gb|EDT37771.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 296

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 126/294 (42%), Gaps = 11/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V  +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G    
Sbjct: 4   LHVFMSVVTAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQHYL 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T   Y ++   +  L+E   +P G LR+         ++   L  F   YP +++++ 
Sbjct: 64  QQTEPAYRQVMQARDALKEVRSEPGGLLRVTALPLARSLVITPILAAFRARYPKVRLEIR 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +N+ +DI+ D  D  IRL   +Q   +  R    +     A+P YL     P SI EL+
Sbjct: 124 YENELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPGYLARHGMPASIAELE 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL--- 244
           +H  I F       +  +  L    R +          N   +++     G GIA     
Sbjct: 184 RHACIRFRFSESGRLHKW-LLHDGRRDVDLDPEGVYVTNDADAVIDAAREGVGIAFAFMR 242

Query: 245 ----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               PD     +  LV ++         ++  Y        KL+AF + +  +A
Sbjct: 243 ERIEPDL---RDGTLVEVLPGACRTLPPMWLYYVNRKHVPAKLRAFIDVLRERA 293


>gi|163758343|ref|ZP_02165431.1| regulatory protein, LysR:LysR, substrate-binding [Hoeflea
           phototrophica DFL-43]
 gi|162284632|gb|EDQ34915.1| regulatory protein, LysR:LysR, substrate-binding [Hoeflea
           phototrophica DFL-43]
          Length = 311

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 118/292 (40%), Gaps = 6/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +    F  V   G F+ AA  L + +S +SR++  LE  +G++L  R +R +T TE 
Sbjct: 6   MDLNDAFYFVQVVEKGGFSAAARALDIPKSRLSRRVRQLEDHLGVRLLQRTSRIVTTTEI 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +R   +   + E  +  ++  +    G + ++ ++ + Q  L   L  FL   P +
Sbjct: 66  GEEYYRHARDALARFEIAETAVRCKTNTIEGTVTVSCSVGMAQFGLAQILPRFLQDNPGV 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +     N+  D+     D AIR     +  SSLIQ +L  +  H + +P YL +     
Sbjct: 126 TVVQRASNQMEDLIKGGIDVAIRGHMDTLPDSSLIQTRLARVEWHLFGSPDYLTSLGSVK 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  H  +  G   P+    +       +    P       +   ++        G+
Sbjct: 186 DPPELANHPAMVLGR--PRETHQWLLTDEGGQTASVPCAVRFASDDMSTLKNAASASLGL 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP Y+ +   +   LVR++ D    +  +    P        ++ F +F+
Sbjct: 244 VALPSYVCRPEVEAGTLVRVLPDWTAGTPQISLLMPSKRGMLPVVETFLDFL 295


>gi|91779169|ref|YP_554377.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691829|gb|ABE35027.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 298

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 64/302 (21%), Positives = 127/302 (42%), Gaps = 10/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +  F  AA +L++S S +SR ++ LE  +G++L  R  R + LT+
Sbjct: 1   MDRLQAMTTFVTVVETEGFASAARKLNVSPSVVSRMVTELEERLGVRLLTRTTRIVRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  +++  ++        P G+L +   +  G+  L   + ++L  YP+
Sbjct: 61  AGATYFEDCRRILGEIDAAEVTATGMHAAPRGQLTVTAPMLFGKMHLMPVVLDYLTRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +     ++ +++  + AD A+R+ + + SSSL    +  +     AAP YL     P 
Sbjct: 121 VNVNCWFLDRVVNMVDEGADVAVRIGE-LPSSSLQAIAVGGVRRVLCAAPAYLDRYGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L  H  I    + P       W  T D+  +  P    +   +  S +   V G G
Sbjct: 180 RPEDLAGHTTIQASGVSPAP----EWRFTADQQSLVVPIQPRMITTTNDSAIAAAVAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  L  Y V    +   L  ++ D    +  V+  + E      K+++F +      R  
Sbjct: 236 VTRLLSYQVARELEAGALKIVLADYEPAALPVHVVHREGRHANQKVRSFLDLAIETLRTK 295

Query: 298 KF 299
           ++
Sbjct: 296 RW 297


>gi|238024732|ref|YP_002908964.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879397|gb|ACR31729.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 301

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 9/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L  F  +A   SF  AA  L +S S++S  +  LE  +G++LF R  R + LTE G 
Sbjct: 6   LSELTAFVAIAEQRSFRAAARALAVSPSALSHAMRSLEARLGVRLFNRTTRSVALTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L          LE+   E+  +  +PSG +RI       + L++  L +FLL YPDI +
Sbjct: 66  RLLHRVGPALSDLESAVDEVSTAQNRPSGSVRINAPETSARLLIRHVLPDFLLRYPDIHV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + + D + IDI  +  D  IR    +    +  R    +   A A+P YL     P    
Sbjct: 126 EFVTDTRLIDIVAEGFDAGIRALDDVPRDMIAVRFGPDMRFIAVASPAYLARHPAPERPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I         +          +         L + +  ++++  + G G+A +
Sbjct: 186 DLMQHRCIRHRFESGALLRWD--FQLDGKTCSLDVNGPLTLGNPNAMIEAALAGIGVAWV 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF----RNFIFLKAR 295
           P+  ++++     L+ +++    P   +   YP        L+ F    R+++    R
Sbjct: 244 PESQIEEHLASGRLIALLDAWSVPLPGLALYYPANRHPPAPLRLFTQAVRDWVAGGVR 301


>gi|190890919|ref|YP_001977461.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190696198|gb|ACE90283.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 293

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 128/291 (43%), Gaps = 9/291 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V       GS + AAE+L +S++  SR I+ +E     +L +R  R L+LT  G ++  
Sbjct: 8   KVLLKTVERGSASAAAEELGMSRAMASRYIAAMEDWSETRLLHRTTRQLSLTSAGERVLD 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
           +  ++    +    E+   +  P G LR+     L +  L   L +F  LYP I++ L +
Sbjct: 68  MCRDIVRVAD-AVTEVATHAETPHGLLRVTAPAILAEAQLIPLLSDFADLYPRIKVDLQI 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ ID+  D  D AIR+   +   SLI ++L       YA+P YL+    P   ++LD+
Sbjct: 127 SDRAIDLVQDRIDLAIRIANRL-DPSLIAKRLGQCSSLLYASPQYLEKYGIPTGPEDLDR 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  +T+  L          L + +  I        Q N  +++ +  + G GIA+LP + 
Sbjct: 186 HRCLTYTHLGGSEWS----LRSSESQIVIAVEGTFQTNDAVALRRAALSGLGIAMLPRFA 241

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                 +  L+ ++      +  ++  Y          +   +F+  K  D
Sbjct: 242 ADQEVQSGKLIVVLPAWQPATLGIHALYVSRKHLPMAARVLIDFLATKLAD 292


>gi|330942451|gb|EGH45048.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 277

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 119/273 (43%), Gaps = 4/273 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  TE G 
Sbjct: 6   LNDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +  ++      L E   KP+G +RI  + D  + +++  L  FL  YPDIQI
Sbjct: 66  RLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    +I  +  D  IRL + I    +  R      +    +P Y +    PL  Q
Sbjct: 126 EICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I            +       R +          NS + ++   + G G+A +
Sbjct: 186 DLTQHTCINIRHSPNGSCYAWE-FEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAYV 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYP 274
           PD + + +     L  ++ D        +  YP
Sbjct: 245 PDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYP 277


>gi|331669916|ref|ZP_08370761.1| HTH-type transcriptional activator TtdR [Escherichia coli TA271]
 gi|331062829|gb|EGI34743.1| HTH-type transcriptional activator TtdR [Escherichia coli TA271]
          Length = 310

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ I++  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIELVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|157146433|ref|YP_001453752.1| hypothetical protein CKO_02192 [Citrobacter koseri ATCC BAA-895]
 gi|157083638|gb|ABV13316.1| hypothetical protein CKO_02192 [Citrobacter koseri ATCC BAA-895]
          Length = 303

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 122/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 5   DLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  +    V+P G +++   + L    +   L +F+  YPD+ 
Sbjct: 65  QTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R +P + S L+ R L       +A+P  ++    P S
Sbjct: 125 LQLEATNRRVDVVGEGIDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPALVQRMGNPSS 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H+         K +  +                 L     L++ +  V G G+ 
Sbjct: 185 PAEL--HHWPGLSLASGKHIHRWELFGPQGARAEVHFTPRLITTDMLALREAAVAGVGLV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +VKD      LV ++E        ++  +P        ++A  +F+  +
Sbjct: 243 QLPVLMVKDQLAAGELVALLEGWEPRREVIHAVFPSRRGLLPSVRALVDFLTEE 296


>gi|330967620|gb|EGH67880.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 301

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 135/296 (45%), Gaps = 8/296 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M++ + D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++
Sbjct: 1   MNYPNLDDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNIGVVLLHRSTRQVSI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +++     +   ++    E+     +PSG LR+ ++  LG+  +   L E    Y
Sbjct: 61  TEDGERVYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGLGRRFVAPALSELAARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I+L + ++ +D+  +  D  IR+   I +  L  R L +      A+P Y++    
Sbjct: 121 PKLDIRLDIQDRLVDLIEEGVDLDIRVGNDI-APHLRARHLASNWRVLCASPAYVQQHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PLS+ EL  H+ +   +           L  +           L  N      Q+C+ G 
Sbjct: 180 PLSLAELANHDCLVIKERDRPFGIWH--LNGLQGAETVKVTGSLSTNHGEIARQWCLDGR 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+ L   + V+       L++++ +    +  ++  Y   L ++ K++    F+  
Sbjct: 238 GVLLRSLWDVRTDLAEGRLIQVLPEYRQDA-DIWAVYTSPLMSSAKVRVTVEFLRE 292


>gi|325523503|gb|EGD01820.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 297

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L VF  VAR  SFT AA +L +SQS++S  I  LE  +G++L  R  R ++ T+ G
Sbjct: 5   NFNDLLVFLAVARERSFTRAAAKLGVSQSALSHTIRDLEARLGVRLLTRTTRSVSTTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    ++E     L +   KP+G +RI  T     +++   L   L  YPDI+
Sbjct: 65  EELLNTAAPRIEEIEAKLASLSDFRDKPAGVVRITATDHAIDSIVWPKLTNVLREYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D    +I  D  D  IR    +    +  R    I M    AP YL+    P S 
Sbjct: 125 LELTVDYGLANIVEDRYDIGIRFGDQVAKDMIAVRISPDIPMAVVGAPSYLEGKSLPKSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ +T      K +  +  L    R I       L  N+   ++Q  V G G+A 
Sbjct: 185 EDLLNHDCVTLRLTTTKGVYAWE-LKKGKREIQARVNGQLTFNTQQQMLQAAVDGFGLAF 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+  V+   D   L  +++D        +  YP   + +       + +
Sbjct: 244 LPEDAVRPYLDRGELQSVLKDWCPAFPGYHAYYPSRRQASRAFSVVIDAL 293


>gi|330505841|ref|YP_004382710.1| putative LysR family regulatory protein [Pseudomonas mendocina
           NK-01]
 gi|328920127|gb|AEB60958.1| putative LysR-family regulatory protein [Pseudomonas mendocina
           NK-01]
          Length = 342

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 128/292 (43%), Gaps = 5/292 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  +  SGS T AAE+L+L++S++ + ++ LE  +G +L  R  R   LTE G 
Sbjct: 45  FDGVELFLQIVESGSLTEAAERLNLTRSAVGKGLARLEARLGTRLLQRSTRRQWLTEDGQ 104

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        +LE  +  L+    +P G+L+ +  +  G +     L   +  +P++++
Sbjct: 105 AYYEHCLRARAELEAAEAVLESGRQQPRGRLKASVPLAFGHHYAAPALWRLMDSHPELEV 164

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D+  +  D A+R+     S  L  R+L    M   AAP YL+       I+
Sbjct: 165 EISFSDRRVDMLQEGFDLAVRIGALPDSDRLSARRLGEQVMSLGAAPAYLQRHEPIERIE 224

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H LI +G   P     +       R       S L ++   S+    + G G+A L
Sbjct: 225 DLARHRLIGYGSAAPS--PGWQLADEQGRMHHARIASALWLDDLQSVADAAIAGMGLAWL 282

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P +++        L  ++         ++  +P A     K +   + +   
Sbjct: 283 PSWLLAHYVLRGQLQPVLAAYRCQPLPIHVIWPTATHMPAKTRCAIDALVAA 334


>gi|116254771|ref|YP_770607.1| putative LysR transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115259419|emb|CAK10557.1| putative LysR transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 294

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + ++L  F  V  +GSFT AAE+L ++++ +S+Q++ LE E+   L  R  R +  TE
Sbjct: 3   AVNLNRLAYFAAVVDTGSFTKAAERLAITKTVVSQQVARLEAELKTSLLLRTTRRVEPTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     ++ +      E+  ++ +P+G LRIA   D G + +      F+  YP 
Sbjct: 63  AGKLLYARCVLIFREAGDAVDEITRANSEPTGMLRIAAPNDYGASTIAPIAAAFIQKYPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +++L+L +  +D+  +  D +IR+   +  SS   R++ +      A+P +        
Sbjct: 123 CRVELLLADTKMDLLANQIDLSIRVGW-LDDSSYQARRIGSFRQFLVASPSFSATL-SLN 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S +++     I   +L  K    + ++              L  NS  +++   + G+GI
Sbjct: 181 SPEDVAGQPFI--ANLALKEPVVWRFIQGDFDRRTVRMQQSLMSNSTPAVLAATLAGAGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++LPD++  ++     L+R++ D   P+  +Y  YP A     K+ AF   +
Sbjct: 239 SVLPDFLAGEHIEAGRLIRLLPDWTLPAGGIYVVYPAARFRPPKVTAFVAML 290


>gi|319790928|ref|YP_004152568.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593391|gb|ADU34457.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 324

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 129/291 (44%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GSF+ AA+ L ++ S+ SRQ+  LE E+G++L  R  R L LTE G++ 
Sbjct: 12  EMVTFLRVAELGSFSAAADLLGMTPSAASRQVKRLEKEIGVQLLQRTTRQLRLTEPGAEA 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E+    +      Q  S KPSG +RI+      + +L  ++ +FL  YP++ +QL
Sbjct: 72  FARCRELVAVAQGAMDIAQRFSKKPSGLVRISAPKAFARRVLHPHILDFLRRYPEVDVQL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I+ +++ID   +  D  +RL        L+ R+L+ +     A+P YL+        + L
Sbjct: 132 IVQDRNIDPIREGVDLVVRLTTE-PPEGLVARQLMPVAHILCASPRYLEQHEAIAHPRGL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ ++ G+        F      +  +          N     ++  +   G+A +P 
Sbjct: 191 VAHSCLSLGEHERDNHWRFRQGDAEEAEV--VVRGRYVSNHSEVRLEAALADLGVACVPA 248

Query: 247 YIVK---DNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++ +   ++  +V+++             +  YP +     K +   + + 
Sbjct: 249 FMTQEALESGRVVQVLAGWEFQGNYRGHAWILYPPSRFTVPKCRVLIDHLL 299


>gi|190574618|ref|YP_001972463.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190012540|emb|CAQ46168.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 313

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 133/293 (45%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +R F  +    SFT A+E L L +++++  I  LE  +G++L +R  R +  T 
Sbjct: 1   MDRFTAMRAFVRIVERRSFTRASEDLGLPRATVTDAIKALEQRLGVRLLHRTTRLVVPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +     +   ++  +   +++   P G LRI     LG++LL  +L EFL  YP+
Sbjct: 61  EGEAFYGRCLRLIADMDDAEAAFRDA--PPRGPLRIEVHGTLGRHLLFPHLPEFLQRYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  D A+R+   +  S L  R+L  +     AAP Y++    P 
Sbjct: 119 IELDVSEGDRYVDLLREGVDAALRVG-TLADSDLAARRLTMLREVTVAAPGYVQAHGLPD 177

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +I+ L++ H ++ +       +          +    P  + ++V+   + +   + G G
Sbjct: 178 TIESLEQGHQMVGYRSTATGQLIPLE-FQQAGQLRYVPLQARVRVSGADAFLGAALAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   P Y +        LV ++ +       +   YP     + +L+ F +++
Sbjct: 237 IIQAPRYRMDPYIARGQLVELLPETPPTPSPLSLVYPRNRTPSPRLRVFIDWV 289


>gi|167835763|ref|ZP_02462646.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 303

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 126/297 (42%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E       P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREAMHG-AIPQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ R+L    M    +P Y +    P +  
Sbjct: 126 DIVLSDAAVDPLDNRSDIAIRSGA-LDDSRLVMRRLGGSRMVVVGSPAYFERNGVPATPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+HN I                   +     P    L +    SI +  V G G+A L
Sbjct: 185 DLDRHNCIGLSGNAKAWP-----FVAAEGQRLLPSGGHLLLGDNESIREAAVSGLGLARL 239

Query: 245 PDYIVK---DNPNLVRIMEDVIT-PSFTVYFCY--PEALKNTGKLKAFRNFIFLKAR 295
             + V    D   LV ++E         +   +  P       ++ A  +F+  + R
Sbjct: 240 ARFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSE-HLPMRVHALLDFLKERIR 295


>gi|325923478|ref|ZP_08185133.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325546045|gb|EGD17244.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 308

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +  FT AAE L ++ S++S+ I+ LET +G KL +R  R L LT +G   
Sbjct: 15  EMEVFIAVVAAEGFTAAAEPLGMTASAVSKLINRLETRLGTKLLHRTTRKLQLTPEGIAF 74

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H     +   ++  + E       P G++RI + +  G + L   L EFL  YPD+Q+ +
Sbjct: 75  HERCLRILDDIDCAEHE-AGQVGSPRGRVRINSHVAFGVHYLLPRLPEFLAHYPDVQLDV 133

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  D +D AIR   P+  S L QR+L    +   A+P YL+    P   ++L
Sbjct: 134 TLSDVVVDLLDDRSDVAIRTG-PLPDSRLTQRRLGASGLVVVASPDYLRRAGTPELPEDL 192

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  + F     + ++ + ++      +       L++    S+ Q  + G+G+A L  
Sbjct: 193 HQHRRLGFN--YARHVDAWPFIGRDGARVAIAPSGDLRLGDGESMRQMALAGAGVARLAR 250

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCY-PEALKNTGKLKAFRNFIFLKA 294
           Y V  +     L  ++E+    +   ++  +         +++   +F+  + 
Sbjct: 251 YHVGADLAAGRLAPLLENHDCGAVEEIHAVFVAPGRHVPARVRVLLDFLAERV 303


>gi|300313187|ref|YP_003777279.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300075972|gb|ADJ65371.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 125/295 (42%), Gaps = 4/295 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A +GSF+ AA QL L+ +++ + ++ LE+ +G++LF+R  R L+LTE G +  
Sbjct: 7   IECFVAAAHAGSFSAAARQLGLTSAAVGKNVARLESSLGVRLFHRSTRKLSLTEAGERFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +        + +    L  +  +P+G L+++     G+  +   L EFL  YP IQ    
Sbjct: 67  QEVGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIVPLLGEFLGRYPGIQPDWH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +N+ +D+  +  D AI     + S  ++ R+L   H    A+P YL       S  +L 
Sbjct: 127 FENRPVDLISEGFDAAIAGGTEL-SPGVVARELAPAHRVLLASPAYLDAHPPLHSPADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I         +  F+      +         + ++   +  +    G GI L+   
Sbjct: 186 EHAGILIRSPQTGRVRPFSLRDRSGQQAPVTLQQRMTMSDANAACEVAEAGLGITLVAMP 245

Query: 248 IV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
                 +   LVR++ D    +  +   +  A     K + F +F+    R  + 
Sbjct: 246 HALPYLEGGTLVRVLPDWYVDTGMLSLYFTAARLLPAKTRVFVDFVVEHFRRERL 300


>gi|71907024|ref|YP_284611.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB]
 gi|71846645|gb|AAZ46141.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 303

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 128/298 (42%), Gaps = 6/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D + L +F  V  +GSF+ AAE+  L +S++SR+I+ LET++G +L  R  R L +T
Sbjct: 5   MSLDANDLILFAQVMAAGSFSRAAERCGLPKSTLSRRITQLETKLGERLLTRSTRRLAIT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G ++      +  + E            P G LR++   D  +  L   L ++   YP
Sbjct: 65  EFGEQILDHAKRLLEETEAASAMALHRQGTPRGVLRVSLPPDFVELDLTPLLLQYASSYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +++++L L  + +D+  +  D A+R    +    +L+ RKL  +    YA+P YL     
Sbjct: 125 EVRLELDLSPRRVDLLAERFDLAVRAASRLPDDTTLVARKLCEMQNGLYASPAYLARYGT 184

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L  H  +       + +  +      D+  G P    L  NS          G 
Sbjct: 185 PAKPADLLDHVCLGMISGTGEAL-PWQLSCGGDQWEGMPN-GPLAANSRSLQRDLAAHGL 242

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  L +       +   L R++ +   P+ T++   P       +  AF + +    
Sbjct: 243 GIVGLAERFATQWIEQGLLKRVLPEWRLPTVTIWCVTPGRRLLPLRTTAFMDMLRAAL 300


>gi|254247274|ref|ZP_04940595.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124872050|gb|EAY63766.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 310

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 124/299 (41%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     SGK+R+++T D G++ L   L EF  L+P 
Sbjct: 61  EGKLYLNCCRQALQALDDADAMLQEGRNVVSGKVRLSSTSDFGRHQLLDWLHEFTTLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L   +   ++  D  D AIR   P    +LI R+L T      AAP +++    P 
Sbjct: 121 VTFSLTASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLATNRRVLCAAPSFVERHGLPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPHDLARFPCNVITIASGPMNTWHFTRGDEVQIHTVPVSTAFETNDGGLTREWTLRGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           AL   + + D+     L  ++ D       ++  Y        +++   +F+  + AR+
Sbjct: 240 ALKSLWDIADDVRAGRLRVLLPDWRHQDAPLHAIYHSKRYMAPRVRVLLDFLAERFARE 298


>gi|99082543|ref|YP_614697.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038823|gb|ABF65435.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 303

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F  V   GS T     + L+ +  S++I  LE  +G++LF R  R LT TE G +
Sbjct: 5   ESLRLFCRVVELGSITSGGRDVRLTPAVASKRIKELEEHLGVRLFNRTTRSLTPTEAGKR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +R    +   +E  +  + + S +P G L+I   +  G+ ++   + +F+  +P+I +Q
Sbjct: 65  FYREALRILDVVEEAESVVAQFSGRPRGTLKITAPLAAGRRIIAPLVPDFVDRHPEIDVQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + ++ +DI  +  D A  +  P   SSL  RK+ ++     A+P YL+    P   Q+
Sbjct: 125 MRMSDRRVDILAEGLDLAFFVGTP-SDSSLKMRKIASVDRVLCASPRYLERHGIPHVPQD 183

Query: 186 LD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  KHN +      P+  E F  L T               +    ++ + +   GI   
Sbjct: 184 LMGKHNCLLL--RYPRSPEYFWTLNTGSGFRKFEVSGKYDADDSEVLLNWALDHRGIVNK 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P + V ++     LV I+ +    + T    YP       K++   +FI  +
Sbjct: 242 PRFEVAEHLRSGALVEILPEARPMAATFGCLYPHKKLQDPKVRLLVDFITER 293


>gi|238758554|ref|ZP_04619730.1| LysR-family regulatory protein [Yersinia aldovae ATCC 35236]
 gi|238703254|gb|EEP95795.1| LysR-family regulatory protein [Yersinia aldovae ATCC 35236]
          Length = 308

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 121/294 (41%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T 
Sbjct: 1   MDQIQAMRIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  ++   ++    E          ++P GK+RI     L +N++   L +F   YP 
Sbjct: 61  EGTLYYQRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALSDFYQRYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L  ++  ID+  +  DC +R   P     L  R +        A+P YL     P 
Sbjct: 121 ITLMLGANDSTIDLMREGVDCVLRAWLP-HDEQLAVRNIGQQPQITCASPAYLAKQGVPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H  + +            ++    +         L V+   + +   V G G+
Sbjct: 180 SLDDLAGHQAVGYFSRFHNRDYPLEFVLQ-GKVESRVLPGILSVSGADAYIAAGVAGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P   ++       L+ I+     P+  ++  +P       +++   +++  
Sbjct: 239 IQAPTPGIQSQLAQGELIEILPHCPPPAMPLFIMFPPGRFLAPRVRVLIDWLVE 292


>gi|218675884|ref|YP_002394703.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
 gi|218324152|emb|CAV25355.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 293

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 133/296 (44%), Gaps = 15/296 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  +G F+ AAE L +  + +SR +S +E+++G+ +F R  R + LTE+G +
Sbjct: 6   DDLEMVLTVVDAGGFSAAAETLDVQVAKVSRSVSKVESQLGVSIFNRTTRRVELTEEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      +++ + E+      P G+LR+        + L   ++ F   YPDI+++
Sbjct: 66  FVDSVRVGLQMIQSAEEEIVSRGELPKGRLRVDAASPFVFHQLVPLVQSFKEAYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    +H  A+P YL     P   ++
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LSDSTLHARPLGKSLLHIVASPDYLAKRGLPTKPED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H ++ F                   P        +  ++  ++ Q  + G+GIA L 
Sbjct: 185 LSSHQIVGFAGNKVLNHWPL--------PNQSDVAPTVTASNGETVRQLVLAGNGIACLS 236

Query: 246 DYIVKDN---PNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++V+++     L+ I+E      T    V   Y ++   + ++ AF +FI  + +
Sbjct: 237 GFMVQEDMAAGRLIPILEQDKLANTDRERVNAVYYKSSSVSKRISAFIDFIQPRLK 292


>gi|197121008|ref|YP_002132959.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196170857|gb|ACG71830.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 297

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 6/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D LR+F  VA   SFT AAE L LS++ +S  +  LE E+G +L  R  R + LT  
Sbjct: 1   MNLDALRMFVKVAELASFTRAAEHLGLSKARVSAAVRDLELELGSQLLQRSTRAVRLTTS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++  + +      +       G++R+     L ++L    L   L  +P++
Sbjct: 61  GEALLARARQLVTEADELAGMFRA-PSALGGRVRVDMPQSLARSLFIPRLPALLDAHPNL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL   ++ +D+  +  DC +R+ K + +S L+ R+L  + +   A+P YL+    P S
Sbjct: 120 EVQLSTTDRRVDVIREGFDCVLRIGK-LDASGLVARRLGEMPLMNCASPGYLRRHGTPRS 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++LD+H ++ +          F +     R    P  + + VNS  S    C+ G GI 
Sbjct: 179 LEDLDRHLVVHYASRFGVGAPGFEYQDGA-RYRERPMRALVTVNSSDSYQAACLAGLGII 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             P   V       +LV ++         V   +P        ++    +I  
Sbjct: 238 QAPRAGVLPGIAAGDLVEVLPQHAAEPLPVSLVHPHGRNVPRHVRLVMGWITE 290


>gi|52426207|ref|YP_089344.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308259|gb|AAU38759.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 288

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 130/291 (44%), Gaps = 9/291 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +  +  F +    GSF+ AAE+L+L+ S++ + IS LE  +  +LF+R  R +TLT
Sbjct: 1   MNDKFSGIEEFLMTVEMGSFSAAAERLNLTGSAVGKSISRLEQRLNTQLFHRSTRKITLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G         +  +LE  ++ L   S +  G++RI      G++ +   L      YP
Sbjct: 61  REGEVWLASCRRMMEELEQAKLLLSSQSQQIIGEIRIDLPTTYGRSHILPKLLAIQADYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +   ++ +D+  ++ D A+R  +    + +I +++        A P ++    + 
Sbjct: 121 KLYLNISFQDRKVDMIAEHIDIAVRFGELADLTDIIAKQIDCFQNQLCATPAFVSKWGKL 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L     I    +       +  +    +  G P     Q+N   + +Q  +   G
Sbjct: 181 NHPDDLTHFPCIVGNQIS------WRLMNEQGKSTGFPLNVQHQINDGDARLQAVLADCG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           IA LPD++++   +   LV+++ +   P   +Y  + + L    K+KA  N
Sbjct: 235 IAFLPDWLIQPAVEAGKLVQLLPEFTPPPEPIYVLWQKKLHLQPKVKAIVN 285


>gi|15803602|ref|NP_289635.1| transcriptional activator TtdR [Escherichia coli O157:H7 EDL933]
 gi|12517639|gb|AAG58194.1|AE005535_6 putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EDL933]
          Length = 310

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVY 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNXDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V    ++  LV+++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFLAA 294


>gi|332286702|ref|YP_004418613.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330430655|gb|AEC21989.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 294

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 127/290 (43%), Gaps = 6/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F ++A+  + +  A  L ++  + +R++  LE  +G++L  R  R ++LT +G   
Sbjct: 4   ALSFFVLLAQHKNLSAVARALDVTPPAATRKLMQLENRLGVRLANRTTRSISLTSEGELF 63

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   ++T +  +     +P G LR+  ++  G+  +     +F L YPDI++ L
Sbjct: 64  LEQAKRILADIKTMEDSVSNHRQQPRGLLRVNASLGFGRRRISALASKFALSYPDIELDL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +K +D+  +  D AIR    +    L+ R+L++   +  A+P YLK   EP S+ +L
Sbjct: 124 QVTDKPVDLVANNIDLAIRFGS-LPDRRLVARRLLSNRRYLCASPKYLKKHGEPESLADL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I       +    + +         + R   +  N     + + + G GI +  +
Sbjct: 183 AHHRCIIHNQ-NDEAHGIWRFTHQQHTEFIKVR-GAMSSNDGDIALGWTLEGHGIMIRSE 240

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +        L  ++ D +     ++  YP       +++ F +FI  +
Sbjct: 241 WDLNKYVAARRLKIVLPDFLPDPADLFLYYPSRQNLPARVRVFIDFIASQ 290


>gi|91786428|ref|YP_547380.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91695653|gb|ABE42482.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 303

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 133/291 (45%), Gaps = 8/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +  F  VAR+G F+ A+ ++ +  +++SR+++ LET +G++LF+R  R + LTE
Sbjct: 1   MDKIESITAFVSVARAGGFSAASREIGVPLATLSRRVAELETSLGVRLFHRSTRQIVLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   L+  +  +      P G+L I   +  G+  LQ    EFL  YPD
Sbjct: 61  SGIGYFAACQHILEYLKDAEETVVGEYRSPKGELSITAPVGFGRQHLQPVATEFLRAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L ++ +D+  ++ D A+R+   +  S  + R +  I M  + AP YLK    P 
Sbjct: 121 IDLRLLLVDRMVDLVGEHLDLAVRIS-TLSDSGQVARSVGEIKMIVFGAPGYLKARGMPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL +H+ I++  L P     F            P  + L   +  S +   V   G+
Sbjct: 180 HPSELVRHSCISWTSLGPYKAWLFR---EGGLEAMFPIRARLTTTTPESAITAAVAELGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                Y  +D   +  L+ ++ D       V   YP +     KL+ F +F
Sbjct: 237 VQATSYQAEDAVRSGLLIPVLRDFEALPTPVSLVYPSSRLVPLKLRVFLDF 287


>gi|15601643|ref|NP_233274.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121726484|ref|ZP_01679748.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147672468|ref|YP_001215190.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153212382|ref|ZP_01948164.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|153819725|ref|ZP_01972392.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153822363|ref|ZP_01975030.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227812455|ref|YP_002812465.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|254850053|ref|ZP_05239403.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746364|ref|ZP_05420311.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|258627622|ref|ZP_05722398.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|262158281|ref|ZP_06029398.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262169156|ref|ZP_06036849.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|262173453|ref|ZP_06041130.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|298499669|ref|ZP_07009475.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9658322|gb|AAF96786.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121631079|gb|EAX63456.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|124116590|gb|EAY35410.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|126509743|gb|EAZ72337.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126520126|gb|EAZ77349.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146314851|gb|ABQ19391.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|227011597|gb|ACP07808.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227015537|gb|ACP11746.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|254845758|gb|EET24172.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736118|gb|EET91516.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|258580065|gb|EEW05038.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|261890811|gb|EEY36798.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|262022437|gb|EEY41145.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|262029963|gb|EEY48610.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|297541650|gb|EFH77701.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 312

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+   +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPIHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALAAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|319427248|gb|ADV55322.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 320

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 120/308 (38%), Gaps = 19/308 (6%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT 
Sbjct: 1   MDRLEAAKVFVTIVERGSMISAANALDMSRSMVTRYLSEMEDWSGARLLHRSTRSLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +                 P G LRI+ +  +   +L   ++++L  YP 
Sbjct: 61  AGEQVLDYCHRLLELANEVPAVSHAGVTIPRGLLRISCSQFMAHQILAPVVRQYLASYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             +   + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      L
Sbjct: 121 ASVNFHVSSQTVDLVAERIDLAIRITNEL-DPNLIARRLGECESVVCAAPSYLAARAAVL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--------------DRPIGEPRISCLQVNS 227
             ++L +HN +T+          +                     +    P       N 
Sbjct: 180 HPEDLTQHNCLTYSYFGDVMWRFYQTDVGAKQVQTLNSDPKLNQGQAFNVPVNGNFSAND 239

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y         L+
Sbjct: 240 SMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVTLLTEFMPQSLGVYGVYQSRKHMQPALR 299

Query: 285 AFRNFIFL 292
              + +  
Sbjct: 300 VMMDMLVA 307


>gi|121586696|ref|ZP_01676480.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121549124|gb|EAX59159.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
          Length = 303

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 126/295 (42%), Gaps = 10/295 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +FY V   GSF+  AEQ  L+ S +S++++ LE E+G++L YR  R LTLTE G  
Sbjct: 4   DDLILFYQVIELGSFSKVAEQNGLTNSVVSKRLARLEEELGVQLLYRTTRKLTLTEAGKA 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V    +     +       SG ++++     G  +L   + EF  L+P + + 
Sbjct: 64  LLHGAKNVKQATQEALDAVVGFGENVSGHIKMSVPTISGDLILADAVAEFCNLHPGLTVD 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY--AAPHYLKNC--REPL 181
           + LDN+ +D+     D  IR    ++ SSLI R ++     +   ++P Y+     +   
Sbjct: 124 MSLDNRFVDLVEGGYDLVIRTGY-LEDSSLIARHILDSQWGSVRPSSPPYIAPATVKPTF 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +HN + +        +                      ++  ++ +  + G GI
Sbjct: 183 KPEDLARHNCLQYAYQTTGATDWE--FKGAKGNYIVKVSGTFSTDNATALRKAALGGHGI 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A +P  +V  +     LV +  + +     +Y  YP   +   K++     I  +
Sbjct: 241 AYVPRCLVYHDFRNGELVDVFPEQVGKKLGIYAVYPFTRQPPNKVRLLIEHIRAR 295


>gi|22124100|ref|NP_667523.1| putative DNA-binding transcriptional regulator [Yersinia pestis KIM
           10]
 gi|108809687|ref|YP_653603.1| putative DNA-binding transcriptional regulator [Yersinia pestis
           Antiqua]
 gi|108813649|ref|YP_649416.1| putative DNA-binding transcriptional regulator [Yersinia pestis
           Nepal516]
 gi|145597606|ref|YP_001161682.1| putative DNA-binding transcriptional regulator [Yersinia pestis
           Pestoides F]
 gi|153997380|ref|ZP_02022480.1| transcriptional regulator, LysR family [Yersinia pestis CA88-4125]
 gi|162419064|ref|YP_001605721.1| putative DNA-binding transcriptional regulator [Yersinia pestis
           Angola]
 gi|165928291|ref|ZP_02224123.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165937571|ref|ZP_02226134.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166011359|ref|ZP_02232257.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212210|ref|ZP_02238245.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400511|ref|ZP_02306020.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420766|ref|ZP_02312519.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167426753|ref|ZP_02318506.1| transcriptional activator AaeR [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167466813|ref|ZP_02331517.1| transcriptional activator AaeR [Yersinia pestis FV-1]
 gi|218930692|ref|YP_002348567.1| putative DNA-binding transcriptional regulator [Yersinia pestis
           CO92]
 gi|229836833|ref|ZP_04456998.1| transcriptional regulator, LysR family [Yersinia pestis Pestoides
           A]
 gi|229839268|ref|ZP_04459427.1| transcriptional regulator, LysR family [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229899831|ref|ZP_04514972.1| transcriptional regulator, LysR family [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904143|ref|ZP_04519254.1| transcriptional regulator, LysR family [Yersinia pestis Nepal516]
 gi|270488577|ref|ZP_06205651.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294505276|ref|YP_003569338.1| probable lysR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|21956850|gb|AAM83774.1|AE013617_10 putative transcriptional regulator LYSR-type [Yersinia pestis KIM
           10]
 gi|108777297|gb|ABG19816.1| lysR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|108781600|gb|ABG15658.1| lysR-family transcriptional regulatory protein [Yersinia pestis
           Antiqua]
 gi|115349303|emb|CAL22271.1| probable lysR-family transcriptional regulatory protein [Yersinia
           pestis CO92]
 gi|145209302|gb|ABP38709.1| lysR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149289017|gb|EDM39097.1| transcriptional regulator, LysR family [Yersinia pestis CA88-4125]
 gi|162351879|gb|ABX85827.1| transcriptional activator AaeR [Yersinia pestis Angola]
 gi|165914676|gb|EDR33290.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165919679|gb|EDR37012.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165989743|gb|EDR42044.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206956|gb|EDR51436.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961572|gb|EDR57593.1| transcriptional activator AaeR [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167049879|gb|EDR61287.1| transcriptional activator AaeR [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054280|gb|EDR64101.1| transcriptional activator AaeR [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229678261|gb|EEO74366.1| transcriptional regulator, LysR family [Yersinia pestis Nepal516]
 gi|229687323|gb|EEO79398.1| transcriptional regulator, LysR family [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695634|gb|EEO85681.1| transcriptional regulator, LysR family [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705776|gb|EEO91785.1| transcriptional regulator, LysR family [Yersinia pestis Pestoides
           A]
 gi|262363339|gb|ACY60060.1| probable lysR-family transcriptional regulatory protein [Yersinia
           pestis D106004]
 gi|262367283|gb|ACY63840.1| probable lysR-family transcriptional regulatory protein [Yersinia
           pestis D182038]
 gi|270337081|gb|EFA47858.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294355735|gb|ADE66076.1| probable lysR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|320017149|gb|ADW00721.1| transcriptional regulator, LysR family [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 303

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 127/291 (43%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA +L  S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKQMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     + L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQQVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKAYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q+S L  R+L  + M   AA  YL     P    
Sbjct: 124 NLVAGIPAPDLIADGLDVVIRVGA-LQNSGLFSRRLGAMPMVVCAAKSYLSQYGTPAKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMANFSWLEYNVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLKAGAGIAYT 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGEVEILFKHYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|254248231|ref|ZP_04941551.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124874732|gb|EAY64722.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 303

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 132/300 (44%), Gaps = 7/300 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +R+F  V   G+FT AA QL +  S +SR+I  LE ++G++L YR  R +++TE 
Sbjct: 1   MDLESIRIFLRVVERGNFTAAATQLDMPLSRVSRKIKQLEDDLGVQLLYRTTRRVSVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     +++    +P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYERCLRAEEILLDADRQVRALRTEPEGTLRVLVPYAIGLFELEPALAEFRRRYPLV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  S  + R L   H    A+PHYL     P +
Sbjct: 121 QLVLIYDNSALDLVEHGFDVALRTG-VLSDSGYVARSLGWSHAKFAASPHYLDRAGRPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H+++  G   P                  P    L  N  +++++    G GIA
Sbjct: 180 PQDLADHDILFVGRDTPGLT--LRLTNAAGDVADVPVRPVLISNESVTVLRQAASGGGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           L+  +      ++  L  ++ D   T    ++  YP+      K++AF  F+      W+
Sbjct: 238 LISTHFTTRRLESNELEIVLPDWHRTDDVELHALYPKRATLDSKVRAFVEFLTEVFTAWR 297


>gi|78060453|ref|YP_367028.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965003|gb|ABB06384.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 327

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 132/291 (45%), Gaps = 5/291 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +A   SFT AA ++ +S++++S+ +  LE ++ +KL YR  R ++LTE G +L+
Sbjct: 9   LAWFVHIAHHLSFTRAAAEMGVSRAALSQNLKALEQQLNVKLLYRTTRDMSLTEDGQRLY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  +E     L E    PSG LR+ T+    + L++  L EF+  YP ++++L+
Sbjct: 69  DTLRPAFGSIEQAISSLHEVRHAPSGLLRVNTSRVAARTLIEPYLGEFMARYPLLRVELV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++   +I  D  D  IRL + +    +       I M    +P YL    +P +  +L 
Sbjct: 129 MNDGMSNIIADGCDAGIRLGESLAEHMVAVPITPMIEMVVAGSPDYLARHGKPATPADLI 188

Query: 188 KHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            HN + +       +  + + +T              +  N    +++  + G G+    
Sbjct: 189 AHNCLCYRQTTSGAIYRWEFTSTDIEGHAFEVEPKGSVVTNDDDGMIRVALQGVGLIQHQ 248

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           D  +++      LVR+++    P    Y   P   +   K++A  +F+  K
Sbjct: 249 DLALREQLAAGTLVRVLDAWCKPFPGYYLYTPSREQMPAKVRALMDFLVEK 299


>gi|238756247|ref|ZP_04617564.1| hypothetical protein yruck0001_34410 [Yersinia ruckeri ATCC 29473]
 gi|238705550|gb|EEP97950.1| hypothetical protein yruck0001_34410 [Yersinia ruckeri ATCC 29473]
          Length = 323

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 142/297 (47%), Gaps = 10/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L +   +   G  + AA QL++S S++S+ +S LE+++G  L  R  R LTLT+ G
Sbjct: 19  SLKQLEILVKIIECGGLSEAATQLNISPSAVSKSLSHLESQLGTMLLKRTTRSLTLTDAG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L+   +++    + +         +P G+LR+  +I  G + L   +  +   YPD+ 
Sbjct: 79  TYLYHRATKLLLDFDESLNTTAGFYNRPQGELRLTCSIAFGYSHLITLVNNYRTRYPDVD 138

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L++  ++++    D AIR+       +   RKL TIH    A+P YLK    P S+
Sbjct: 139 LYIDLNDNFVNLNESNFDIAIRVASTPPD-NYSLRKLSTIHWAYCASPEYLKKMGIPTSV 197

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H  + +  L P  ++D +   +V         S +Q NS L +++  +   GIA 
Sbjct: 198 QQLTNHQCLLYPGLTP-ILKDTDEAGSVHLLKLR---SPIQANSSLVLLKAVLEHQGIAY 253

Query: 244 LPDYIVKDNPNLVRIME-----DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP Y++ D      I       ++   +  +Y  Y  +  +  K+++F +F+    +
Sbjct: 254 LPTYLLGDAIQRGEITPLALDGEITHATHGLYALYFPSRYSNPKVRSFIDFLVETLQ 310


>gi|33603466|ref|NP_891026.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33577590|emb|CAE34855.1| probable LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 296

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 140/301 (46%), Gaps = 15/301 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  +G++L  R  R + LT
Sbjct: 1   MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERGLGMRLLNRSTRRIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +  +      +LQ+ + +P G+LRI+    L Q  L   + EF  LYP
Sbjct: 61  EAGALYFERCRHIVEEARVAHEQLQDMAAQPKGRLRISLPTSLAQLFLTDVIPEFRSLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+    L  + +D   +  D  +R  +    SSL+ R++V +  H YAAP YL    EP
Sbjct: 121 DIECDFDLSMRPVDPISNPFDLVLRFGQQ-PDSSLVARQIVLMTQHLYAAPQYLALHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
               +L  H  +      P   + F++  L + D+         L  N+   + +    G
Sbjct: 180 RVPADLGHHECLR-----PSMSDAFSYWVLQSGDKVERVQVSGRLAANNIGMLGRLASQG 234

Query: 239 SGIA--LLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI   ++ D +   ++    LVR++ D       ++   P  +    K +AF +FI  +
Sbjct: 235 LGITPLVMSDSMTRAIRQAG-LVRVLPDWALTPIPLFALMPSRM-VPAKTRAFLDFIQPR 292

Query: 294 A 294
            
Sbjct: 293 L 293


>gi|15597319|ref|NP_250813.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107101545|ref|ZP_01365463.1| hypothetical protein PaerPA_01002588 [Pseudomonas aeruginosa PACS2]
 gi|218891926|ref|YP_002440793.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235150|ref|ZP_04928473.1| hypothetical protein PACG_01035 [Pseudomonas aeruginosa C3719]
 gi|254240549|ref|ZP_04933871.1| hypothetical protein PA2G_01206 [Pseudomonas aeruginosa 2192]
 gi|9948138|gb|AAG05511.1|AE004639_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126167081|gb|EAZ52592.1| hypothetical protein PACG_01035 [Pseudomonas aeruginosa C3719]
 gi|126193927|gb|EAZ57990.1| hypothetical protein PA2G_01206 [Pseudomonas aeruginosa 2192]
 gi|218772152|emb|CAW27931.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 310

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 125/295 (42%), Gaps = 8/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++  F  V  + SF+ AA +L  ++S +S++I  LE  +G  L  R    L+LT+ G 
Sbjct: 4   FAEMTTFVSVVDAHSFSEAARRLGTTKSQVSQRIQQLERRLGRVLLNRTRP-LSLTDPGR 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  +  + ++     G+LR++  +      L   L  F   +P +++
Sbjct: 63  TYYEHACRLLQELEQAEASVLDADDDLRGQLRLSAPLAFTPRYLAPLLARFAERHPQLRV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ +++     D A+R+ + +  S L+ R +        A+P YL     P   +
Sbjct: 123 DVQADDRFVNLQEPRFDMALRMGR-LDDSCLVARPITANRHLLCASPDYLARHGVPQHPE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ + + +  P  M     L     P        ++ +S   +++    G G+A+L
Sbjct: 182 ELQAHDGLVYYNREPGGMLC---LPVDGEPASFRIRVRMRTDSGHQLLEGARAGLGLAIL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P ++  D      L+ ++         V   Y +  +   K+     F+  +  D
Sbjct: 239 PSFLAADALLAGELLPVLPGYSPDGGQVSVVYRKTQRTPRKILVLGQFLEEEIGD 293


>gi|170727306|ref|YP_001761332.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812653|gb|ACA87237.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 306

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 135/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  + R GS T AA+ L +S+SS+S+Q++ LE ++G +LF R  R + LTE G
Sbjct: 7   NMQGLVLFSHINRQGSLTAAAQLLGMSRSSVSKQLAALEKKIGSRLFNRTTRKIALTEVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++ +   +V   L+T +   ++S    +G L I+     G+  L   L  FL LYP + 
Sbjct: 67  RQVLKEAHKVELALQTIEHISEDSQSIVAGDLNISCASAQGRVHLVPLLTRFLSLYPKVN 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L+++ ID+  +  D +IR+   +  SSLI RKL  +     A P YL       + 
Sbjct: 127 VNLQLEDRFIDMVAENIDVSIRVGY-LPDSSLIARKLGDLSGVLCATPEYLTGAPALKTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + + +     M  + + +             L +N    ++   +  +G+ L
Sbjct: 186 SDLLHHRCLFYRNKK-LAMNSWTFFSEQRGEETVVVSGPLSINDPGVLISAALEHAGVLL 244

Query: 244 LPDYIVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLK 293
               ++ D      L+ ++ +  +     +Y  YP       K KA  +F+  +
Sbjct: 245 TDKSLLGDTMEEGALIPVLPEYQSIGNLPIYIVYPRRELLPAKTKALVDFLLKE 298


>gi|86748823|ref|YP_485319.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86571851|gb|ABD06408.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 299

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 9/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  VA    F  AA +L LS S+++R ++ LE  VG +L  R  R + LT+
Sbjct: 1   MDRLDAMAAFVAVADLNGFAPAARKLGLSPSAVTRLVAALEQRVGARLLQRTTRSVALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +   +E  +       + PSG+L ++  +  G+  +   + ++LL YPD
Sbjct: 61  IGARYLERVKRILSDVEEAEASASAERIDPSGRLVVSAPVGFGRLHVAPLMSDYLLRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +L L ++ I++  D  DCA+R+  P+  SSL+ R+L T+     A+P YL     P+
Sbjct: 121 VAGELRLSDRIINLVEDGVDCAVRIG-PLADSSLVARQLGTMRRIVVASPDYLGARGVPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E+  H+ + FG +       F       R    PR      N+  + + Y   G G+
Sbjct: 180 VPAEVAAHDTVHFGAITSTVTWRFVVDGRDVRVACTPR---FATNAADAAILYAERGGGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +  Y   +      L  ++ D   P   +   YP +   + K++ F + +  +  DW+
Sbjct: 237 TRVLAYQAAEAIRTGRLQVVLADYEAPPLPITIVYPTSRLLSAKVRTFVD-LAAEICDWR 295

Query: 299 F 299
           F
Sbjct: 296 F 296


>gi|56710300|dbj|BAD81016.1| putative transcriptional regulator LysR-type [uncultured bacterium]
          Length = 303

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 138/296 (46%), Gaps = 11/296 (3%)

Query: 1   MSF--DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+     + LR+F VVAR+ SF   A +L +S++ +S++++ LE  V  KLF+R  R ++
Sbjct: 1   MNIKPQLEDLRLFCVVARNRSFAETARELGISKAVVSKRMALLEAAVQEKLFHRTTRNVS 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT QG  +H+    +   ++     +      PSG LRI ++   G++ L   L E    
Sbjct: 61  LTAQGEIVHQWAQRIREDIDLMGEAISREKAAPSGLLRICSSTGFGRSRLAPALSELARQ 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P ++IQ+ L ++ +D+  +     IRL   +   ++I+R++        AAP YL    
Sbjct: 121 FPQLEIQVELFDRPVDLVEEGFQLDIRLGH-VHEGNVIKRRIARNRRVLCAAPAYLAQYG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            P ++ +L  H  I   +   +  +   W       +   ++S  L  N+   + Q+ + 
Sbjct: 180 TPQTLADLQNHRCIPIRE---RDQDFGRWELHGPAGVAAIKVSGPLSANNGEIVRQWAID 236

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI L   + V  +     L  ++     P+  V+  YP  L  + K+K    F+
Sbjct: 237 GHGIILRSTWDVSRDIAAGLLAPVLPQYFQPA-DVWAVYPSRLSVSAKVKVCVEFL 291


>gi|170735855|ref|YP_001777115.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818043|gb|ACA92625.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 297

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 122/296 (41%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S++SR+I+ LE    ++L  R  R  T+TE G
Sbjct: 3   DLNDLYYFVKVVEHGGFTQAGRALDVPKSTLSRRIAALEARYDVRLLQRTTRHFTVTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + +  +  ++    +P G +R++    L +  +   +  F+ ++P + 
Sbjct: 63  REFYERCLAVLVEADAAREVIERRHAEPRGIVRVSCPTALLEFRVSELVARFMAIHPQVH 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        AAP +L     P  
Sbjct: 123 VHLEATNRRVDLLSEGFDLALRVRFPPLEDSDLVMRVLADSPQRLVAAPQWLDGRTAPSD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     + +G   P     +  +                 +   ++    + G GI 
Sbjct: 183 PAELIGVPSLDWG---PARHHVWQLVGPNGEHAQLRHHPRFVTDDMHALRDAAIHGVGIV 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP  +V+D   +  L+ ++         V+  +P       +++   +F+    R
Sbjct: 240 QLPCMVVEDDLRDGTLIDVLPGWAPKGGVVHAVFPSRRGLLPRVRLLIDFLAEHIR 295


>gi|167033203|ref|YP_001668434.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859691|gb|ABY98098.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 303

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 140/289 (48%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D L +F  VA+  SF   A++L +S + IS++I  LE  + ++L +R  R +T++E+G
Sbjct: 6   SLDDLNIFLQVAKRASFAAVADELGMSAAYISKRIRMLEQTLEVRLLHRTTRRVTVSEEG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++++   +++  ++    ++     +P+G+LRIA+++ LG+  +   L E    YP + 
Sbjct: 66  ERVYQWALQIFDAVQRMGDDISAQHREPAGQLRIASSLGLGRRFVAPALSELAERYPRLD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L + ++ +D+  +  D  IR+   I + +LI + L        AAP YL     P  +
Sbjct: 126 IRLDVHDRLVDLIAEGVDLDIRVGNAI-APNLIAKPLARNRRVLCAAPAYLARRGTPKVL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+ +   +           L   D   G      L  N      Q+C+ G GI L
Sbjct: 185 GELASHDCLVIKERDHPFGVW--QLMGPDGEEGVRVTGGLSTNHGEVAHQWCLDGRGILL 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + V D   +  LV+++ED   P+  ++  Y   L ++ K++   +F
Sbjct: 243 RSWWDVHDSLQDGRLVQVLEDYHQPA-DIWAVYTSPLASSAKVRVAVDF 290


>gi|116251581|ref|YP_767419.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256229|emb|CAK07310.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 295

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 125/293 (42%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  VAR  SF  A E+  ++ S+IS  +  LE  +GI+L  R  R ++LTE G
Sbjct: 5   ELSELAAFAAVARHKSFRKAGEERGVTASAISHAVLNLEDRIGIRLLNRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       + ++      L      P GK+RI     +G  ++   +   L   P++Q
Sbjct: 65  ELLISHLDPAFGEMAAALDALNRYRDTPFGKVRINVPNSIGPFVIGRVIGPLLKKNPNLQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +DI  +  D  IR  + +    +  R    I +    +P Y +   +P + 
Sbjct: 125 LEINATDRLVDIVEEGFDAGIRFGERVTEGMIALRIKPRIRLVVVGSPAYFETRPKPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H  I   ++ P             + +       L ++ +  +MQ  + G G+A 
Sbjct: 185 HELKRHLCI--QNMFPSGARYAWEFEKDGQAVSFQPTGPLSLDDHELMMQAALGGVGLAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +  V+    +  L+++++D   P   +Y  YP     +   +A  + +  +
Sbjct: 243 VWEPRVEKAIASGELIQVLDDWCQPEEPLYLYYPSRRHMSAGFRALIDAMKAE 295


>gi|170734055|ref|YP_001766002.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817297|gb|ACA91880.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 310

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 124/299 (41%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     SGK+R+++T D G++ L   L EF  L+P 
Sbjct: 61  EGKLYLNCCRQALQALDDADAMLQEGRNVVSGKVRLSSTSDFGRHQLLDWLHEFTTLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L   +   ++  D  D AIR   P    +LI R+L T      AAP +++    P 
Sbjct: 121 VTFSLTASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLATNRRVLCAAPSFVERHGLPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPHDLARFPCNVITIASGPMNTWHFTRGDEVQVHTVPVSTAFETNDGGLTREWTLRGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           AL   + + D+     L  ++ D       ++  Y        +++   +F+  + AR+
Sbjct: 240 ALKSLWDIADDVRAGRLRVLLPDWRHQDAPLHAIYHSKRYMAPRVRVLLDFLAERFARE 298


>gi|296156519|ref|ZP_06839357.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893118|gb|EFG72898.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 298

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 125/298 (41%), Gaps = 10/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +  F  AA +L++S S +SR ++ LE  +G++L  R  R + LT+
Sbjct: 1   MDRLQAMTTFVTVVETEGFASAARKLNVSPSVVSRMVTELEERLGVRLLTRTTRIVRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  +++  ++    +   P G+L +   +  G+  L   + ++L  YP 
Sbjct: 61  AGATYFEDCRRILGEIDAAEVTAAGTHAAPRGQLTVTAPVLFGKMHLMPIVLDYLARYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +     ++ +++  + AD A+R+ + + SSSL    +  +     AAP YL     P 
Sbjct: 121 VNVNCWFLDRVVNMVDEGADVAVRIGE-LPSSSLQAIAVGGVRRVLCAAPAYLDRYGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L  H  I    + P       W  T DR  +  P    +   +  S +   V G G
Sbjct: 180 RPEDLAGHTTIQASGVSPAP----EWRFTADRQSLVVPIQPRMITTTNDSAIAAAVAGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  L  Y V    +   L  ++ D    +  V+  + E      K+++F +      R
Sbjct: 236 VTRLLSYQVAREIEAGALKIVLADYEPAALPVHVVHREGRHANQKVRSFLDLAIETLR 293


>gi|218677216|ref|YP_002396035.1| putative transcriptional regulator, LysR family [Vibrio splendidus
           LGP32]
 gi|218325484|emb|CAV27656.1| putative transcriptional regulator, LysR family [Vibrio splendidus
           LGP32]
          Length = 311

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 17/302 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L LS ++++ ++  LE   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMAMFVSIVKHHGLAAAGRELGLSPATMTARLQALEERYGVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+   +   +  +Q    +  G L+IA   D+G+  +   L EF   YPD
Sbjct: 61  SGELYHKACLEILDNVSEAENLIQNGVKEVKGPLKIAAPKDIGKQYILPILSEFCQQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +I+    D  IR  + +  SSLI R+L        A+P YL     P+
Sbjct: 121 VIPYLYLNDNLSNIAESGMDIVIRYGE-LVDSSLISRRLSPSRRVLCASPEYLAKHGTPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             Q+L +H+ +    ++    E   W     D       +     +    I  + + G G
Sbjct: 180 KPQDLVEHDCLA---MLRSNEELKTWHFQDHDMKKAVTVVPKRFSDDGEVIRYWALQGEG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+D+     LV ++   +          S  +   Y        +++ F +F
Sbjct: 237 IALKSVLDVQDDINNQRLVTLLNGYMKNFNTSTSVSSADLNVVYISKKYQPKRIRLFLDF 296

Query: 290 IF 291
           +F
Sbjct: 297 LF 298


>gi|117924083|ref|YP_864700.1| LysR family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117607839|gb|ABK43294.1| transcriptional regulator, LysR family [Magnetococcus sp. MC-1]
          Length = 315

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 130/295 (44%), Gaps = 5/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + L  F  V R G F+ AA    + ++ +SR+++ LE  +G  L  R  R + LT
Sbjct: 1   MN-DLNDLAFFAAVVRYGGFSAAARATGIEKTRLSRRVAALERRLGASLLQRSTRMIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +     V    +     +     +P G++RI+  + L QN L   L  ++  +P
Sbjct: 60  EAGERFYERCQVVIEGAQGAYESIDALKAEPMGRVRISAPVVLAQNYLAPILPAYMAAHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + + L   ++ ID+     D A+R+   I+ S +L+ R++        A+P +L+   +
Sbjct: 120 KVTVHLDATDRVIDLLEGRVDVALRVVAQIEDSPNLVAREVAPTRRIMVASPAFLQAHGQ 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+  L +  +I     + +    +          G      L  +     ++  V G 
Sbjct: 180 PTSLLVLKEMAVICCHADLHEGRSRWVLRNGAAMQEGVQGSPRLVADDMRVQLKAAVHGI 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+ALLP+ +V        L+R++ +  T    ++  YP        +++F +++ 
Sbjct: 240 GVALLPEPVVAAELRAGKLMRVLPEWATAERMIHVIYPRPRGMLPSVRSFIDYLL 294


>gi|322832349|ref|YP_004212376.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167550|gb|ADW73249.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 296

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 126/298 (42%), Gaps = 6/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR  SFT AA +L ++QS++S+ IS LE ++ I+L  R  R ++ T
Sbjct: 1   MKRNLNDLLYFITVARESSFTRAAAKLGVTQSALSQAISALEEDMQIRLLTRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L     +    +      L E   KP+G +RI     + + +L   L   L  YP
Sbjct: 61  SAGERLLLTIGDHVDGILAELDMLTEMRDKPAGTVRITCGPHVLKTILLPKLSPLLKHYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCRE 179
           DI+++   ++   +I  D  D  +RL   I    +I   +   + M A A+P Y      
Sbjct: 121 DIRLEFDANHGFRNIVADRFDAGVRLGDTI-DKDMIAIPISPKLQMAAVASPEYFATHAM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +HN I         +  +      + P+       L  N+   ++   + G 
Sbjct: 180 PQTPHDLLQHNCINMRQATSGGLYVWE-FDNEEGPVNVRVTGQLTFNTTAHMVDAALAGL 238

Query: 240 GIALLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIA LP        +   L+R++E    P    Y  YP   + +       + +  KA
Sbjct: 239 GIAFLPEEEFESHIEEGRLIRVLEPWCQPFPGYYLYYPSRKQPSPAFSLVADALRHKA 296


>gi|206564027|ref|YP_002234790.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198040067|emb|CAR56048.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 301

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 129/297 (43%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDRLDGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +  GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALAELEAAEADLDCGRNEARGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDLVEEGIDLAVRIGPLADSTSLAVRRLGTQYGSLGAAPSYLARYGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H  I +       ++ +   A     +       L  +   +I      G G
Sbjct: 181 QSLDDLKNHRTIAYSR--SGVVQPWYLRAPDGSSVHIDMPHQLSFDDVQAIAAAGASGFG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP +++        +V +++        ++  +P+      K +   + +    
Sbjct: 239 IAWLPSWLLDHYVKRGEMVVVLDRCFVCEGDIHAIWPKTRYLPRKTRCMIDALVEAV 295


>gi|194292732|ref|YP_002008639.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193226636|emb|CAQ72587.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 302

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D+ RVF  VA  GSF  AA  L L ++S+S  +  LE +VG +L +R  R + L+  G+
Sbjct: 4   FDQYRVFLQVAEMGSFIKAAHALGLPRASVSAAVQDLEAQVGARLLHRTTRQVRLSADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +  ++E      Q    + SG+L +     + + L+   L   L  +P +Q+
Sbjct: 64  QLLERLRPLLAEVEDIDQLFQAGQRQASGRLNVDMPSRIARRLVAPALPALLRRHPRLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+  +  DCA+R    +  SSL+ R L  I +   A+P YL+   EP    
Sbjct: 124 SLGSSDRAIDLVQEGVDCAVRFGM-LADSSLVVRPLGRIALVNCASPAYLREHGEPRDPA 182

Query: 185 ELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L + H  + +          + ++ T     G    + + VN+  S +  C+ G G+  
Sbjct: 183 DLRRGHLAVGYASPRTGRDLPWEFVDTDGSAHGADVATRVSVNNAESYIACCLAGIGMIQ 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +P + V+   D   L+ IM D    S  V   YP   + + +L  F  +
Sbjct: 243 IPRFDVQHLLDTGQLLEIMPDWRPASMPVSLLYPHRRQRSQRLAVFLEW 291


>gi|317493155|ref|ZP_07951578.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918815|gb|EFV40151.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 299

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 129/298 (43%), Gaps = 10/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +D +++ +F  V  +  F  A   L + +S ISR+I+ LE  +GI+L  R  R  ++T+ 
Sbjct: 2   YDLNEMFLFVHVVENQGFAAAGRALGMPKSKISRRIAQLEERLGIRLINRSTRRFSVTDL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  + E  +  +     +P G ++I+    L    +   L  F+L YP +
Sbjct: 62  GQEYYHHCRAMVVEAEAAEELVARRHSEPCGTIKISCPTSLLDYWVGSMLSRFMLRYPRV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +Q+   N+ +D+  +  D AIR+R  P++ S L+ ++L        A+P  +      +
Sbjct: 122 NLQIESTNRKVDVIHEGIDIAIRVRMSPLEDSELVVKRLGNSRQMLVASPALID--GRNM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSG 240
           +   L +   + +G +            +    I  +PRI     ++   + Q  V G G
Sbjct: 180 TPAALSELPALHWGWVQSDYSWRLQGPNSATAHISFQPRI---VTDNLSLLCQAAVAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  LP  + +    +  LV ++      S  ++  YP        +K   +F+  + +
Sbjct: 237 VVHLPYVVARSTLASGQLVDVLPQWHPSSGLIHAAYPSRRGLLPAVKTLLDFLGEEFQ 294


>gi|162453042|ref|YP_001615409.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161163624|emb|CAN94929.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
          Length = 303

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 127/267 (47%), Gaps = 7/267 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D++R F  VAR  SF+ AA  L L+ SS+S+Q++ LE  +G +L  R  R ++LTE GS
Sbjct: 8   LDEMRAFLEVARRQSFSAAARALGLTSSSVSKQVARLEERLGAQLLRRTTRRVSLTEAGS 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   +E  +  + +    P G LRI+    LG   +   +      YP+++I
Sbjct: 68  LYAERADRILSDIEEARRAVADLDGTPRGTLRISAPTVLGSIRVAPAVLACRAKYPELRI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D+  +  D A+RL   I  +SL+ R+L        A+P YL+    P  ++
Sbjct: 128 DLDLTDRIVDLVAERIDVAVRLAAEISPASLVARRLADDLRVLCASPRYLRRHGTPRRLE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ IT  +L P        L   +     P     + +  +++    V G G+A L
Sbjct: 188 DLADHDCITL-NLDPVARWT---LVGPEGERVVPVSGTFRSSDTITLRDAAVAGVGLANL 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFT 268
           PDY+V+D   +  L R++ +       
Sbjct: 244 PDYVVQDQLESGALRRVLPEYGASQRA 270


>gi|307316823|ref|ZP_07596265.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306897445|gb|EFN28189.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 301

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 130/297 (43%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  +R+F  V  SG F  AA+ LH+S  S++R ++ LE  +G +L  R  R L LT 
Sbjct: 1   MDRWQAMRIFVQVVESGGFAPAAKVLHMSPPSVTRAVAKLEDLIGTRLLVRTTRSLKLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  ++   +     S   P+G L +      G+  +   + +FL  YP 
Sbjct: 61  AGEGYVADCRRILGEIAEAEANAAGSFTAPAGLLTVTAPALFGRIHVLPVILDFLDHYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++ I  ++  ++  +  D AIR+   + +S L+ R++ ++      +P Y     +P 
Sbjct: 121 MQVKTIFVDRVTNLVDEGLDVAIRIAS-LPASGLVARRIGSVRQVLCGSPDYFARFGDPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL +H +I    L         WL   D  I  P    L  N+  +++   V G G+
Sbjct: 180 SPQELARHRIIGREGLFGHS----EWLFGRDNNIRVPISPRLICNTNDAVLAAAVAGWGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +    Y V  +     L  ++ D       ++  + E    + +++AF +F   + R
Sbjct: 236 SRFQSYQVAPDVSAGRLKVVLADYEREPVPIHIVHAEGRMVSARVRAFVDFAAGRFR 292


>gi|307321810|ref|ZP_07601197.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306892551|gb|EFN23350.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 301

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 137/295 (46%), Gaps = 10/295 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D  D++++F  +    SF  AA  L L++S+ +  I  LE +VG++L  R  R +  T
Sbjct: 4   AMDRLDRMQLFIRIVERRSFAAAASDLGLARSTATEAIKQLEHDVGVRLLERTTRHVAPT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  ++    +  +++  +   ++   +P G LR+     L +  L   L EFL  YP
Sbjct: 64  LDGAAFYQRCIAILAEVDEAENAFRDM--QPRGLLRVDAHPLLTRTFLLPRLTEFLDRYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +Q+   ++ +D+  +  DC IR  + I  S LI R+L  I     A+P Y++    P
Sbjct: 122 LLDLQIAQGDRLVDLVREGIDCVIRAGE-IADSGLIMRRLGMITEITCASPAYIERHGIP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            S   +D H  + F  +  +  +      T+   +    + C L VN+  ++    + G 
Sbjct: 181 HSPDAMDGHRAVGF--ISSRTGQIMPLEFTMGSSVRYVTLPCRLTVNNSDTMNDLALRGF 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+   P Y ++   D   LV ++ +   P   +   YP+  + + +++ F +++ 
Sbjct: 239 GLIQAPRYRLQRDLDEGGLVEVLAEFPPPPTPLSALYPQNRQLSPRVRVFLDWVV 293


>gi|221199134|ref|ZP_03572179.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221181585|gb|EEE13987.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 317

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 130/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP 
Sbjct: 61  AGQRYLDRCQRILAYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P
Sbjct: 121 VAVELTLSQHVPDIIDEGYDVSLQLSTAELPDSGLVSQRLGEMHSVLCASPAYLKERGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L+ H  +     I    + ++      R   E  +   QVN   ++      G G
Sbjct: 181 RTVSDLEGHACLQIVTPI-FPRDRWHLDGPNGRETFELPLPDFQVNIADALGAGLRAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP         +  LVR++ +      TVY  Y        K++ F +F+  
Sbjct: 240 IGALPMSTALPAFASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 294


>gi|91786624|ref|YP_547576.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91695849|gb|ABE42678.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 311

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 117/271 (43%), Gaps = 8/271 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L ++  ++S+ ++ +E+ VG+ L  R  R ++LT +G         +  ++      L
Sbjct: 27  RELGITTPAVSKHLALMESRVGVPLVNRTTRRMSLTPEGELYLEHARRILGEINDMAELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             S   P G LR+  T+  G+  +   +  F+  YP +++QL L      ++ D  D  I
Sbjct: 87  GVSRSTPKGLLRVNATLGFGRTHVAPIISRFVRKYPQVEVQLQLSVNPPPLTDDSFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R   P   + +I R +        A+P YL     P    +L +HN I       +    
Sbjct: 147 RFGAP-PDARVIARHIAPNRRLLCASPAYLAKHGTPKVPNDLTRHNCIGIRQG-EEAYGL 204

Query: 205 FNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRI 258
           +   +   R +    I     L  N     + + + G GI +  ++ ++ +    +LV++
Sbjct: 205 WRLASGRGRNVTTEAIKTRGNLTTNDGEIAVNWALDGHGILMRAEWDIERHLKNGHLVQV 264

Query: 259 MEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +    TP   ++  YP+  + + +++AF +F
Sbjct: 265 LPHYYTPDADIHAVYPQRHQLSARVRAFVDF 295


>gi|218768928|ref|YP_002343440.1| probable LysR-family transcriptional regulator [Neisseria
           meningitidis Z2491]
 gi|254805668|ref|YP_003083889.1| LysR-family transcriptional regulator [Neisseria meningitidis
           alpha14]
 gi|121052936|emb|CAM09290.1| probable LysR-family transcriptional regulator [Neisseria
           meningitidis Z2491]
 gi|254669210|emb|CBA08010.1| LysR-family transcriptional regulator [Neisseria meningitidis
           alpha14]
 gi|319411226|emb|CBY91633.1| putative HTH-type transcriptional regulator [Neisseria meningitidis
           WUE 2594]
          Length = 303

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 139/289 (48%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LT  G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTGAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +       + ++      +  +         ++ ++ L + +    G+ I   P +
Sbjct: 186 GLPAVLPTYTNQQKLDLTR--KSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPLW 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + +    +LVR++ +   P+  +   Y +    + K+++F +F+  K
Sbjct: 244 AAEHDLRCGSLVRLLPEYTVPTDRLNAVYADRAFLSAKVRSFIDFLNEK 292


>gi|323525498|ref|YP_004227651.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382500|gb|ADX54591.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 328

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 129/299 (43%), Gaps = 9/299 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+ 
Sbjct: 61  ALTEAGQLFYQHCQAMLDEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSTILPEFMH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ +D+  D  D A+R+R  P ++++++ R L         AP  L+ 
Sbjct: 121 RYPEVRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L +    T           +N +A             L      +I +  +
Sbjct: 181 NAPPLQPNDLSRFE--TLDVPTSDGRHVYNLIAPDGSRHAHEHEPRLVTADLSTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G GIA LP+ +         L  +M     P+  +Y  +         ++AF +++  
Sbjct: 239 AGVGIAALPEMMYGAALRAGQLSPVMPGWTFPAPQLYAVFVSRQGMVPAVRAFVDYLVE 297


>gi|241204208|ref|YP_002975304.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858098|gb|ACS55765.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 295

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 125/293 (42%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  VAR  SF  A E+  ++ S++S  +  LE  +GI+L  R  R ++LTE G
Sbjct: 5   ELSELAAFAAVARHKSFRKAGEERGVTASAVSHAVLNLEDRIGIRLLNRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       + ++      L      P GK+RI     +G  ++   +   L   P++Q
Sbjct: 65  ELLISHLDPAFGEMAAALDALNRYRDTPFGKVRINVPNSIGPFVIGRVIGPLLKKNPNLQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +DI  +  D  IR  + +    +  R    I +    +P Y +   +  + 
Sbjct: 125 LEINATDRLVDIVEEGFDAGIRFGERVTEGMIALRIKPRIRLVVVGSPAYFETRPKLATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H  I   ++ P             + +       L ++ +  +MQ  + G G+A 
Sbjct: 185 HELKRHLCI--QNMFPSGARYAWEFEKDGQAVSFQPTGPLSLDDHELMMQAALGGVGLAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +  V+    +  L+++++D   P   +Y  YP     +   +AF + +  +
Sbjct: 243 VWEPRVEKAIASGELIQVLDDWCQPEEPLYLYYPSRRHMSAGFRAFIDAMKAE 295


>gi|254300949|ref|ZP_04968393.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157810837|gb|EDO88007.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 309

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 5/296 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE EVG  L  R  R L +TE
Sbjct: 12  DVNLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEVGASLVVRTTRRLNVTE 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    ET    +   +    G LR++  +D G  ++   L      +P 
Sbjct: 72  AGRAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPA 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P 
Sbjct: 132 LEIELQCDDRVVDLVRDNLDVAIRLGR-LADSNHRAAKLGGFERWLVASPAFVARHGAPA 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L     +    +    +E  N  A  +R     R      N+  +     + G G 
Sbjct: 191 SPEALGALPYVMLSTVPRTTLELANAHAHGERASVRCR-RAFASNTATACRAAVLAGGGF 249

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +   +   D+     LVR++     P   ++  +P A   + K++A  + +  + 
Sbjct: 250 GVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRALIDMLKTRL 305


>gi|91223158|ref|ZP_01258424.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91191971|gb|EAS78234.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 307

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  + ++ ++IS  I  LE ++G  LF R  R L LT +G 
Sbjct: 4   LNDLNIFVETARQGSFSKAANSMDMTPAAISASIKRLEGQIGFPLFVRSTRSLRLTSEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T++    L+    ++  +  + SG+L I    D G+N+L   + EF+ LYP++ I
Sbjct: 64  LFLDKTTQALATLQEGLDQISSARGELSGQLHITAPSDFGRNMLLDWVDEFIDLYPNVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+     D AIR  +P   S+L+   L  +      A+P Y+    E  S 
Sbjct: 124 KLELSDSLTDMYTKPVDIAIRYGEP-ADSNLVVLALCGSNERILCASPEYVATHPELASP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN + +  ++   + +   L              L  N      +  + G GIA 
Sbjct: 183 ADLTQHNCLCY--MVADSVYNKWTLTRGSEKEQIVVSGNLLSNDSDLPHRLAIKGKGIAN 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +  +     LVR++ +       +Y    +    T  ++ FR+FI  K
Sbjct: 241 KSLMDISRDLIEGRLVRVLPEWDCGPVPLYMVCADRRLLTPTIRTFRDFIQQK 293


>gi|17548883|ref|NP_522223.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431133|emb|CAD17813.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 297

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 125/291 (42%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G FT A   L + +S +SR+I+ LE + G++L  R  R  ++TE G
Sbjct: 3   DLNDLYYFVKVVEHGGFTRAGLALGMPKSKLSRRIAALEAQYGVRLLQRSTRHFSVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + +  +  ++    +P G +R++    L +  + G + +F++ YP +Q
Sbjct: 63  REFYERCLGVLVEADAAREIMERERSEPQGTVRMSCPTALLEYRIAGLVAQFMVEYPRVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++ S L+ R L        A P +L+    P  
Sbjct: 123 VHLEATNRRVDVMGERLDLALRVRFPPLEDSDLVMRVLSDSQQRLVACPAFLEGRALPKH 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     + +G   P     ++ +                 +   ++ +    G GI 
Sbjct: 183 PADLAGMPTLDWG---PPRDHVWHLVGPQGMEAQVRHQPRYVTDDMTALRRAAQQGVGIV 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP  +V+ +     LV I+         ++  +P       K++   +++
Sbjct: 240 QLPCMVVEADLRNGTLVDILPGWAPKGGIIHAVFPSRRGLVPKVRLLIDYL 290


>gi|16762126|ref|NP_457743.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16766662|ref|NP_462277.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143615|ref|NP_806957.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56415294|ref|YP_152369.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181875|ref|YP_218292.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|194443452|ref|YP_002042622.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194447818|ref|YP_002047395.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194471837|ref|ZP_03077821.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194737638|ref|YP_002116315.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195873554|ref|ZP_02697316.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197248197|ref|YP_002148291.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197264194|ref|ZP_03164268.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197301198|ref|ZP_02664450.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197364224|ref|YP_002143861.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198246154|ref|YP_002217336.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387349|ref|ZP_03213961.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204931143|ref|ZP_03221937.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205354268|ref|YP_002228069.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205357299|ref|ZP_02346679.2| HTH-type transcriptional activator AaeR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205358026|ref|ZP_02575044.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205358779|ref|ZP_02659008.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205359434|ref|ZP_02669976.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205360122|ref|ZP_02834737.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205360585|ref|ZP_02684585.2| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|207858615|ref|YP_002245266.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|25319790|pir||AD0911 probable LysR-family transcription regulator STY3547 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16421927|gb|AAL22236.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16504429|emb|CAD07882.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139250|gb|AAO70817.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56129551|gb|AAV79057.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62129508|gb|AAX67211.1| putative transcriptional regulator, LysR family [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|194402115|gb|ACF62337.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194406122|gb|ACF66341.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458201|gb|EDX47040.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713140|gb|ACF92361.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195633113|gb|EDX51527.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197095701|emb|CAR61270.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197211900|gb|ACH49297.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197242449|gb|EDY25069.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197287886|gb|EDY27274.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197940670|gb|ACH78003.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199604447|gb|EDZ02992.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204319910|gb|EDZ05116.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205274049|emb|CAR39055.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205322502|gb|EDZ10341.1| HTH-type transcriptional activator AaeR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205328101|gb|EDZ14865.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332045|gb|EDZ18809.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205336184|gb|EDZ22948.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340902|gb|EDZ27666.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348366|gb|EDZ34997.1| transcriptional activator AaeR [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710418|emb|CAR34776.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261248530|emb|CBG26368.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995572|gb|ACY90457.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159916|emb|CBW19435.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|320087814|emb|CBY97578.1| Uncharacterized HTH-type transcriptional regulator yhjC [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322716365|gb|EFZ07936.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323131728|gb|ADX19158.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|326625115|gb|EGE31460.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629391|gb|EGE35734.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332990225|gb|AEF09208.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 309

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 130/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++++++   G+GIA +
Sbjct: 183 DLSSHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGTGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V D     +L  ++    +    VY  Y E  K   K++   N +
Sbjct: 240 PLMWVIDEINRGDLEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINAL 288


>gi|134278949|ref|ZP_01765662.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|134249368|gb|EBA49449.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 336

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 123/290 (42%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT  G
Sbjct: 3   TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTPAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 63  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 123 IELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHGAPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 183 RDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y   ++    NLV ++         VY  YP       K++ +   +
Sbjct: 241 LPLYAAIEDLRCGNLVLVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEAL 290


>gi|146338022|ref|YP_001203070.1| DNA-binding transcriptional activator GcvA [Bradyrhizobium sp.
           ORS278]
 gi|146190828|emb|CAL74833.1| Transcriptional Regulator, LysR family; putative Glycine cleavage
           system transcriptional activator (Gcv operon activator)
           [Bradyrhizobium sp. ORS278]
          Length = 306

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 122/296 (41%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LR F   AR  SFT AA +L+++Q++IS QI  LE E+GI+LF R  R L LT Q 
Sbjct: 6   SLNGLRAFEAAARHLSFTRAASELNVTQTAISHQIKRLEDELGIRLFLRQNRSLALTPQA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                +    +  L      L          L ++T   L    L   L  F   +P I 
Sbjct: 66  RDYLPLVRAAFDDLRLATERLVRKDNAK--VLTVSTIASLAAKWLLPRLTAFQEAHPTID 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++      +D   D  D AIR  +     ++    L+   +    +P  L+  +   S 
Sbjct: 124 VRITTSTGLVDFRKDDVDAAIRYGRG-HWPAVRAEWLMADELFPVCSPALLQGTKPLRSP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H L+              WL     P+   R S L  +  L  +Q  + G G+A+
Sbjct: 183 EDLAHHTLLQASGGYDDDWRL--WLTAAGLPVEMSRQSRLSFDLSLMTVQAAIDGLGVAI 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V+D+     LV   E ++      Y   PEA  +  KLKAFR ++   A+ 
Sbjct: 241 GRTAYVQDDIAKGRLVVPFEMMLPSDAGFYLVTPEARTDPPKLKAFRQWLKSAAQQ 296


>gi|307245822|ref|ZP_07527908.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254795|ref|ZP_07536622.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259236|ref|ZP_07540966.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853524|gb|EFM85743.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862321|gb|EFM94288.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866903|gb|EFM98761.1| LysR substrate binding domain protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 294

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  +FT AA +L +SQS++SR I  LE+ +G++LF R  R L+LT  G
Sbjct: 6   NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L +   + + KL+     L      PSG++RI  +      +L   L +F   YP+IQ
Sbjct: 66  NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D    DI  +  D  +R    +    +  R      M    +P Y      P + 
Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPDYFHTHGFPRTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +       M  ++++   +    + +      N Y SI     LG G+  
Sbjct: 186 SDLAHHQCLNYR-YASGAMYHWDFIVNHEHIQIKTQGQWTFSNDY-SIRDAAKLGLGLGY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +   +V+   +   L++++ +        +  YP     +  LK   +
Sbjct: 244 ICKDLVQKELEKGELIQVLSEFSYTFTGFHLYYPH-RNISPALKCMID 290


>gi|258622589|ref|ZP_05717611.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258585289|gb|EEW10016.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 312

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+   +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPIHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALAAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|254559003|ref|YP_003066098.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254266281|emb|CAX22042.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens DM4]
          Length = 298

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 123/292 (42%), Gaps = 4/292 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  SFT AA +L +SQS++S+ +  LE  + ++L  R  R ++ TE G +L
Sbjct: 8   DLAAFLTVARERSFTRAAAKLGISQSALSQTVRNLEERLKVRLLTRTTRSVSPTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R        +ET    L E+  +P+G  RI       + +L   + + +  +PDI +++
Sbjct: 68  LRTVGPHLDAVETELAALGETLDQPAGNFRITAIEHAAETILLPGIAKVVGEHPDIHVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D    DI     D  +R  + I    +  R    + M    AP Y+     P   QEL
Sbjct: 128 VVDYGLTDIVSHRFDAGVRAGEDIAKDMIAVRVGPDMRMVVVGAPSYIAMRGTPRIPQEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ I+        +  +       RP+       L  N+   I+    +G G+A +P 
Sbjct: 188 VGHSCISLRLQTSGGLYAWE-FEKDGRPVNVRVEGGLVFNTPRLILNAARMGLGLAFVPS 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                  ++  LV+I++D        +  YP   + +   +     +  K R
Sbjct: 247 DQAGPLIESGELVQILDDWCPSFPGYHLYYPSRRQASPAFRLLVEGLRYKGR 298


>gi|170700881|ref|ZP_02891868.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134199|gb|EDT02540.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 301

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +  +S  I  LE +VG+ L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMTSFTRAAESLGIQKGRVSMVIRKLERDVGVALLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++  +++  Q     +  +  G+LR+    +L ++++   L + +  +P+++
Sbjct: 63  RAFYSRARDLLAEVQELQSMFSGNGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  PI   +LI R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRLG-PITDDTLIVRPLGKLRMTNAASPGYLARYGIPHTL 181

Query: 184 QELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L    H ++ +   +      + +    D     P  S +QVNS  +     + G G+
Sbjct: 182 DDLRTQGHRMVHYTLTLGARHPGWEY-PHGDGYASLPLPSAMQVNSVQTYHAAGLAGIGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                  +    ++  LV ++ D                  + +++AF ++I
Sbjct: 241 IQAGYSALAHHLESGALVEVLPDQRPEPLAASLVVAHRRNLSPRVRAFMDWI 292


>gi|167590769|ref|ZP_02383157.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 301

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 134/304 (44%), Gaps = 11/304 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LR F  VA +G F+ A  +L L+ SS+ R +  LE  +G  L  R  R +TL++
Sbjct: 1   MDKFSALRAFVEVAEAGGFSSAGRRLDLAASSVVRAVDALEASLGAVLLNRTTRQVTLSD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +     +  +L      + +   +PSG LR++  +  G   +  ++  FL  YP 
Sbjct: 61  AGSVYYARAKRLLEELAEADALVSDRGSEPSGPLRVSVPVAYGVRRIAPHIAAFLARYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+ +   D AIRL +   S+ ++ R+L T   +  A+  YL+    P 
Sbjct: 121 LDIDLQLTDERVDLVVGRIDVAIRLGEAAPSADVVARQLGTFQRYVVASHAYLEARGMPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  H  + F     +    F   A             L+ N    +    + G+GI
Sbjct: 181 TPGELVDHACLRFHFGGDQQAWTF---ADAHGAATVIVAGRLKSNHSEVLRDAALDGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD++V  +     L R+ E            V   Y    + + ++ AF +F+   A
Sbjct: 238 ALLPDWLVDADVRSGRLRRLFEQYEVTPDAARSVVTALYLPNQRGSKRVAAFIDFVESLA 297

Query: 295 RDWK 298
           R  +
Sbjct: 298 RAQR 301


>gi|328469311|gb|EGF40257.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 309

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 129/290 (44%), Gaps = 10/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALNVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +       E   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSIAMVNAAQQAVELSAEEHTEPTGALTVAAPEAFLNSVLQPFVLPFLQRYPKIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+     D A +L       +L+ +++   ++   A+P YL     P    +L
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDK-PDENLVLKEISKTNLVLCASPDYLAQRGMPEHPTQL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++H+ I   +     +  F      +            VN     +     G GI +  D
Sbjct: 191 EQHDCIYLAENDKDNIWSF---FKEEAFHSIAVSGRYAVNHSQMRLNGVKAGLGIGIFHD 247

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFC---YPEALKNTGKLKAFRNFI 290
           ++VK+      +V+++ D +  S         Y +      +L+ F +F+
Sbjct: 248 FVVKEALECGEVVKVLSDWMIKSNYHGAVAMQYAQTKYMPARLRVFLDFV 297


>gi|238774037|dbj|BAH66533.1| probable HTH-type transcriptional regulator [Klebsiella pneumoniae]
          Length = 309

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 123/299 (41%), Gaps = 11/299 (3%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    L +F  +   GSF+  A Q  ++ S++SR +S LE E+G KL  R  R L L
Sbjct: 1   MNLNLLPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           ++ G  +++   ++                   GKL ++    +G+ ++   +  F   Y
Sbjct: 61  SDAGETIYQHAQQMLEAARQAMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L L+++ +D   D  D A+R+     S  L  + L+ I     A   YL+    
Sbjct: 121 PQVDVCLRLEDRPLDFIDDGIDLALRITD-TPSPGLHGKPLMPIRHVICATEAYLQQHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + Q+L  H+ I+ G+        F       +            N     +       
Sbjct: 180 PYTPQDLRAHSCISLGETPADARWKFR---REGKTETVQTYGRYAANHTAVRLDAVRQHL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP +  ++   N ++V+++ +     + S  ++  +    +   +++A  +++  
Sbjct: 237 GIGSLPLFTAREALANGDIVQVLPEWEFISSYSGDLWLLWAGDKQMPARMRAMIDYLSE 295


>gi|28900242|ref|NP_799897.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260361635|ref|ZP_05774662.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260880802|ref|ZP_05893157.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260896488|ref|ZP_05904984.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|28808553|dbj|BAC61730.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308089271|gb|EFO38966.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092239|gb|EFO41934.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308112731|gb|EFO50271.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 311

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 129/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L LS ++++ ++  +E   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMTLFVSIVKHQGLAAAGRELGLSPATVTARLQAIEERYGVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+    +   ++ T+  LQ    +  G L+I+   D+G+ ++   +  F   YPD
Sbjct: 61  AGAMYHQACLNIIDSVKETENLLQTGISEVRGTLKISAPRDIGKQIISPMVSAFSEQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  S+LI R+L +      A+P YL     P 
Sbjct: 121 VTPYLYLNDNLSNLAESGLDLVIRYGE-LADSNLISRRLASSQRVLCASPDYLSKQGVPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
             Q+L  H  +    ++    E   W    +       ++  +  +    I Q+ + G+G
Sbjct: 180 CPQDLAAHRCLA---MVRSNEELKTWHFKDEESHQSITVTPKRFSDDGEVIRQWALDGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDV--------ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     ++ +     LV +++                ++  Y        +++ F +F
Sbjct: 237 IALKSILDIQQDLKQQRLVTVLDGYMKNFSAFSQGAEADLHVIYQSRQYQPKRVRLFLDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LVEQ 300


>gi|330002216|ref|ZP_08304242.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328537394|gb|EGF63642.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 301

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 119/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 3   DLNDFAWFVQVVDHGGFAAAGRALDQPKSKLSRRIAQLEERLGVRLIQRTTRQFAVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +  + E  Q  ++    +P G +RI   + L    +   L  F+  YP + 
Sbjct: 63  QTFYQHCKAMLIEAEAAQQAVETLRAEPRGSVRITCPVTLLHVHIGPMLARFMARYPGVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R +PI+ S L+ R L        A+P  +     P +
Sbjct: 123 LHLEATNRRVDVVGEGIDVAIRVRPRPIEDSDLVMRVLADRGHRLVASPDLIFRLGRPQA 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     ++ G    K    +                 +     L++ +  + G G+ 
Sbjct: 183 PSELSAWPGLSLG--ANKHQHKWQLTGPGGARAEVYFTPRMVTTDMLALREAAMAGVGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V+D   +  L  ++++       ++  +         ++A  +++  +
Sbjct: 241 QLPLLMVRDQLASGELEVVLDEWQPRREVIHAVFASRRGLLPSVRALVDYLSEE 294


>gi|301166209|emb|CBW25784.1| putative LysR family transcriptional regulator [Bacteriovorax
           marinus SJ]
          Length = 286

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 86/291 (29%), Positives = 149/291 (51%), Gaps = 12/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L+ F  V+  GSFT AAE L   +S +SR IS LE E+G++L  R  R  +LT +
Sbjct: 1   MDLNLLKTFSKVSELGSFTKAAEVLKQPKSRVSRAISRLEDEIGLELIRRTTRQTSLTTE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++ H+L+     L +S  + SG LRI    DLGQ++L   + ++  LYP++
Sbjct: 61  GEAFYNRIKDLIHQLDEEIDSLNDSKKEISGVLRITAPEDLGQSILLDIIAKYNDLYPNV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q +L  + +D++ D  D A R+ K ++ S+LIQR    +H  A A+  Y++    P S
Sbjct: 121 EVQTLLTGEYLDLTKDNIDLAFRVGK-LEDSNLIQRSFKDVHFVAIASREYIQRYGLPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H L+TF         DFN L +   P  E     +  +S   ++   + G+GI+
Sbjct: 180 TKDLHQHKLLTFKGF------DFNNLNSASSP--EALKYQINTSSIPMLLNMALEGNGIS 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++P +  ++      LV +      P  T+   Y      + + +AF + +
Sbjct: 232 IVPSFYCEEYIRTGELVHLFPKWRGPKHTIKILYTATSNLSKRTRAFLDLV 282


>gi|300697902|ref|YP_003748563.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074626|emb|CBJ54181.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 316

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 126/295 (42%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LE  +G++L  R  R + +T+ G
Sbjct: 3   DLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S  +     +           + +  KPSG+LR++  + +    L   L +FLL  P+++
Sbjct: 63  SAFYAQCEAMTQAARAAFEVAEHAGDKPSGRLRVSCPVGVAHIFLAPVLSKFLLAQPEVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L + N+ +D+  +  D A+R+R  +  S+L+ R          A+P ++       S 
Sbjct: 123 LELDVTNRRVDVIGEGYDVALRVRATLDDSNLVARTFGVSGQVLVASPSFVAEHGPFDSA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             L     +          E   W  T      +    +     +    + Q  + G GI
Sbjct: 183 ASLRG---MAGVGSGGTGGERARWRLTGPDGAAVDIEYVPAFVTDDLFLLGQTAIAGVGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP  +  +   +  LV ++ D   P    +  +P        ++AF  F+  +
Sbjct: 240 AQLPFNLCAEAIQDGRLVVLLPDHRLPVHQFHAVFPSRRGLVPAVRAFIEFLAEE 294


>gi|209550132|ref|YP_002282049.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535888|gb|ACI55823.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 300

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 139/294 (47%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G FT AA    ++ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERGGFTAAALARRMTPSAVSKLVARLEQRLGARLVNRSTRKLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +   +   + +   S  + SG++RI T+   G ++L   +  F+ L+P + + +
Sbjct: 71  YERSIAILADIAEAERQ-ASSGEQASGRIRINTSGSFGNHVLAPLMPAFMALHPAVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  + AD AIR   P+++SSLI RKL        A+P YL+   EP ++ +L
Sbjct: 130 SHTDRIVDLMEERADVAIRAG-PLKNSSLIARKLGATGKIIVASPDYLRRHGEPRTVADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I F     + +E +  L      I  P    +QV    ++    + G+G+A L  
Sbjct: 189 RRHCRIGFS--YARAVEGWP-LREDGETITIPITPGVQVGDGEAMRHLALSGAGLARLAA 245

Query: 247 YIVK---DNPNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V+   D   L+ ++++         Y  Y  +      +++A  +F+    R
Sbjct: 246 FTVRADIDAGRLMPVLDEANPGDLEEFYALYMGQGGPLPARVRALLDFLASHVR 299


>gi|78059647|ref|YP_366222.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964197|gb|ABB05578.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 313

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 132/296 (44%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   +E  + E  ++  KPSG+L +  T   GQ  +   +  +   YP 
Sbjct: 61  AGQRYLDRCQRILGYIEEAESEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P
Sbjct: 121 VAVELTLSQHVPDIIDEGYDVSLQLSATELPDSGLVSQRLGEVHSVLCASPAYLKERGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGS 239
            +++ELD H  +    + P    D   L   D P   +  +   QVN   ++      G 
Sbjct: 181 RTVRELDGHACLQI--VTPVFPRDRWHLDGPDGPETFDLPLPDFQVNIADALGAALRAGL 238

Query: 240 GIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP         +  LVR++ D      TVY  Y        K++ F +F+  
Sbjct: 239 GIGSLPMSSALPALASGALVRVLPDYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 294


>gi|300716733|ref|YP_003741536.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299062569|emb|CAX59688.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 304

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G F+ AA+ L +  +++S+ I  LE  +G+KL  R  R +++T 
Sbjct: 1   MDQLQAIRAFARVVETGGFSKAAQSLQMPNATLSKSIQALEKHLGVKLLERSTRRVSVTR 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +  T  +  +LE     L  S   P G+LRI T   +   LL   L +F   YPD
Sbjct: 61  DGTAYYERTKHLLSELEDIDATLGRSQATPKGRLRIETGGAVASLLLIPALPDFCARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++Q+ + ++  D+  +  D AIR+       +LI RK+        A+  YL+    P 
Sbjct: 121 IELQVGVSDRTADVIGENIDGAIRISA--ADGALISRKIGAFGWTTCASKAYLQRYGVPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             Q++   N    G    +                E   +C + VN   + +   + G G
Sbjct: 179 HPQQILDGNFPVAGYFSSQTGILLPMKFCKQGESLEITPACKVMVNESNAHLATALAGIG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    D+++  +     LV ++ED   P   +YF Y  + + + K++ F +++
Sbjct: 239 LIHTLDFMIHPSIKAGKLVPVLEDWRAPPVDIYFSYAPSRQLSTKVRVFADWV 291


>gi|254491199|ref|ZP_05104380.1| LysR substrate binding domain, putative [Methylophaga thiooxidans
           DMS010]
 gi|224463712|gb|EEF79980.1| LysR substrate binding domain, putative [Methylophaga thiooxydans
           DMS010]
          Length = 306

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 143/309 (46%), Gaps = 16/309 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F      GS   AA +L++S ++ S+ I+ LE  +G +L  R  R L LT+
Sbjct: 1   MDTLRGIESFVRAVELGSIAAAARRLNISSAAASQNIARLEKGLGARLLTRTTRSLALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +  +LE  +  +  S  + SGKL +A +    +++L   +  F   YP 
Sbjct: 61  SGEVYYQRVKGLIQELELAEQAVSASQGEVSGKLTVACSAAFARHVLAPLIPGFQAAYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++++  ++  D   +  D +IR+R+ ++   ++ RK+ T+ +H  A+P YLK    P 
Sbjct: 121 ISLEVVATDRRPDHIGEGIDVSIRIRQQLE-EGIVARKVATVPLHFCASPSYLKQVGCPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           + Q L +HN + F   +P   + F W    D    EP + + +  +    + +  + G G
Sbjct: 180 TPQALLQHNCLMF--RVPVEGKIFRWAFIRDGVRYEPEVKATMISDDIDLLARLAISGGG 237

Query: 241 IALLPDYIVK---DNPNLVRIME-------DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L  ++      + +L+++ E       +V       YFC  +    T K+ AF  ++
Sbjct: 238 IARLASFVAMPFLADGSLIQLFEKEQSPDVEVEAEPLEYYFCLLDRYAKTPKVTAFFEYL 297

Query: 291 FLKARD-WK 298
                D W+
Sbjct: 298 KTHLPDKWQ 306


>gi|254506708|ref|ZP_05118848.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219550289|gb|EED27274.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 296

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 128/287 (44%), Gaps = 11/287 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V   VA++ SFT  AE+L +S+  ++R +   E  +G +L  R  R ++LT  G +L  
Sbjct: 8   KVMLDVAQTESFTATAERLEMSRPMVTRYVEAAENWLGARLLQRTTRKVSLTSAGEQLLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  + +  +  L  +    +G +R++ ++  G + L   L+ F   YP I++ +  
Sbjct: 68  NLQHWVEQAQQMEESLMPTQA-ITGYVRLSVSMSFGFSQLMPALQAFRQRYPGIKLDIDA 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  +  D AIR      + +LI R     +    AAP YL         Q+L +
Sbjct: 127 QDRAVDMVAERIDLAIRTTNE-PNPALIGRPFSVCYSKLVAAPEYLACHDPITHPQDLTR 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  + + +   +      W  T      +  +SC +  N    ++   + G GI++ PDY
Sbjct: 186 HACLGYKNFGRQI-----WQLTQGEQQHDVEVSCDVTANEATVLLHGSLAGLGISMQPDY 240

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + +   D   LV ++ +    +  +Y  YP     +  ++A  +FI 
Sbjct: 241 LAQEWIDQGKLVWVLPEWQLMTLQMYLLYPSRKHLSPPVRALIDFII 287


>gi|307727973|ref|YP_003911186.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588498|gb|ADN61895.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 321

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 16/288 (5%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
              SF+  A +L +  S++SR IS LE ++GI LF R  RGL LTE G            
Sbjct: 15  ELQSFSKTANELSVKTSTVSRYISELEKDLGIALFNRSTRGLVLTEGGRLFREHALLALQ 74

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
            L+  +      +  P G LR+      G+  +  +L  F+  YP I + ++  ++ +++
Sbjct: 75  ALDDAREVTSSLNRSPQGVLRVTIPPAFGRLHVVPHLPAFMSRYPHIDLDIVSTDETLNM 134

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG 195
                D AIR    +  SSL+ R+L         +P Y +    P +  +L  HN +   
Sbjct: 135 IDAGIDVAIRTG-VMPDSSLMARRLAPHRRIVCGSPGYFERNGIPRTPDDLSAHNALRLS 193

Query: 196 DLIPKCMEDFNWLATVDRPIGEPRIS-------CLQVNSYLSIMQYCVLGSGIALLPDYI 248
            L+P     F   A   +P  +   S        ++     +++   V G GIALLP ++
Sbjct: 194 -LMPDDKWFFARSAVKLKPAQKVSESMVVELKGRVRAGDQEAVLALAVAGCGIALLPTWL 252

Query: 249 VKDN---PNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
              +     L +++      +      V+  YP     + K++AF +F
Sbjct: 253 AGADLRTGRLQQVLPQWEARTGRAAPAVWAAYPPKKVVSSKVRAFVDF 300


>gi|241207243|ref|YP_002978339.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861133|gb|ACS58800.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 298

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 118/293 (40%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + +F  A E+L +++S++S+ +  LE  VG+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRVGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G            ++      ++E   +PSG LRI  +      L    L  F+   P
Sbjct: 61  EAGEVFFEAVRPSVRQVNDAMQTVREMQARPSGLLRITVSSIAENFLSGTLLAGFMEACP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ + + + + DI     D  +RL + I+   +           A A+  YL     P
Sbjct: 121 DIKLDITITDDEFDIVEAGFDAGVRLGEVIEQDMIAISVSEEQRQCAAASRSYLDRRGHP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL  H  I +          +      DR         +  N    +++    G+G
Sbjct: 181 RHPRELQNHACIGWRPRPDTAPYRWE-FTENDRDFDVSVDPTVTTNDMGMMIRMACAGAG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I        +   D   LV ++ED   P    Y  YP   +   KL+A  +++
Sbjct: 240 ITFGMAETFQSYIDRGELVPLLEDFCPPFPGFYLYYPRRQRQPLKLRALVDYV 292


>gi|123443533|ref|YP_001007506.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090494|emb|CAL13363.1| LysR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 298

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT  G     
Sbjct: 8   EVFVTIVERGSMIAAAEALEMSRAMVTRYLAEMEQWAGARLLHRTTRKLSLTHAGEATLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +   + + +  G LRI+ +  LGQ+ +   + ++L  YP + + L +
Sbjct: 68  RCRHMLEFAKDMDLIEGQENEELRGLLRISCSQSLGQSAVAIAVTDYLRRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L   H    AAP YL     P +  +L  
Sbjct: 128 NNRSVNLVEERIDLALRITNDL-DPNLIARPLSICHSVVCAAPSYLSAKGTPKTPPDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                            L  N  + ++   + G+GI L P Y 
Sbjct: 187 HNCLTYSYFGKSLWH----FDQQGVKSSVAVGGNLSANESVVLLSGALEGAGITLQPSYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+R++ D    +  +Y  Y    +    L++  +F+  
Sbjct: 243 AAPYIASGELIRLLPDYQPQAMGIYGIYTSRRQMPATLRSMLDFLVE 289


>gi|187926987|ref|YP_001893332.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241665316|ref|YP_002983675.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728741|gb|ACD29905.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240867343|gb|ACS65003.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 305

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+++ LET++G +L +R +  +++T  G 
Sbjct: 4   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRVAELETQLGTRLLHRSSHRVSVTPVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + LL   L EF   +P ++I
Sbjct: 64  AVYRHAREMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLLARWLAEFADSHPKLRI 123

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L L N  +D+     D AIR    P+ S  ++ R L        A+P  +    EP + 
Sbjct: 124 ELDLSNTYVDLIEQRIDVAIRAATGPLPSREVVARHLAVSPRVLVASPALVARVGEPATP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L+    +  G L      D+  L      +  P       ++ L++ +  + G G+A+
Sbjct: 184 ADLENTPCLGQGALTR--CRDWVLLDARGHRMVLPIRPRFAADNLLALREAAIAGLGLAI 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP +          L  ++         ++  YP        +KA   F+  +
Sbjct: 242 LPQHCCHAALGEGRLRTVLPGWTPEPADLHALYPSRTGVPPSVKALVAFLRER 294


>gi|171316746|ref|ZP_02905958.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171098096|gb|EDT42911.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 309

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT 
Sbjct: 1   MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  + +      +       G+L +     + + ++   L      YP 
Sbjct: 61  DGALLLERGRRLLAEADELDRLFRRRDRDVMGRLNVDAPSRIARRVIAPALPLLFRRYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P 
Sbjct: 121 LQLSLGSTDRTIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFALINCASPDYLRECGVPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               L   H  I +    P    +  W    D       + S + VN+  + +  C+ G 
Sbjct: 180 HPDALAHGHWAIGYAS--PTTGRELGWEYCADGGQHTLALPSRVIVNNAETYIASCIAGM 237

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +P + V    D+  LV +M         V   YP     + +L AF  +
Sbjct: 238 GLIQIPRFDVVHLLDSGALVEVMPGHRAAPMDVSAVYPHRRHRSRRLNAFIEW 290


>gi|83945620|ref|ZP_00957966.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850986|gb|EAP88845.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 303

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 124/293 (42%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VA + SFT AA +L  SQS++S+ +  LE  +G++L  R  R +  TE G
Sbjct: 5   DLSDLMTFLAVAEARSFTKAAVRLGTSQSAVSQVVRRLEDRLGVRLLTRTTRNVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++E     L +    PSG LRI  T D   +LL+  + + +  +PDI 
Sbjct: 65  RRLAERLRPALDEIEAELETLDQIRSTPSGLLRITATYDSAHDLLEPVVSQLMQDFPDIA 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D + +DI+ D  D  +RL + + +  +       + M    AP Y      P + 
Sbjct: 125 VEISVDARLVDIAKDGFDAGVRLGEQVDADMIAVPIGPDLSMRVAGAPAYFDRAGRPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+ I         +  +       RP+          +     ++  + G G+  
Sbjct: 185 HELTDHDCINLRLQTLGGLYAWE-FEKDGRPLSVRVEGRYTSDDPALNIKMALKGGGLVC 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LPD ++  +     L  ++ED   P    +  YP   + T   +   + +  +
Sbjct: 244 LPDQLLTGHLKTGALETVLEDWCPPFPGYHLYYPSRRQMTPAFRLLLDRLKAQ 296


>gi|270264868|ref|ZP_06193132.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041166|gb|EFA14266.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 302

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 123/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT+ G +   
Sbjct: 8   EVFITIVDRGSMIAAAETLEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTDAGERTLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++        +   E S +  G LRI  +  LGQ  L G + ++L  +P + + L +
Sbjct: 68  RCRQMLALAGEIDLVEGEQSDELRGLLRITCSQSLGQTALVGAVAQYLKRHPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L +      A+P YL     P   Q+L  
Sbjct: 128 NNRAVNLVEERIDLALRITNEL-DPNLIARPLSSCASVVCASPAYLAAHGTPRHPQDLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+               +            L  N  + +M   V G+GI++ P Y 
Sbjct: 187 HNCLTYSYFGKSLWH----FDSQGVKSAVAVSGNLSANESVVLMAGTVQGAGISMQPYYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+ +M D    S  +Y  Y    +    L+   +F+  
Sbjct: 243 AAPLLASGELIELMPDYRPQSMGIYGIYTSRRQMPATLRTMLDFLVE 289


>gi|186474924|ref|YP_001856394.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191383|gb|ACC69348.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 312

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 146/292 (50%), Gaps = 11/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V   GSF  A+E++ +S +  S+ +  LE ++G +L  R  R +  TE G + +
Sbjct: 7   MKVFRHVVEVGSFVGASEKMDMSAAMASKHVMHLEQQLGARLLNRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S+V  +L+  +  +  +SV P G+LR+++    G   +   + ++   +P + + + 
Sbjct: 67  ERLSQVLSELDEAEQAVGAASVVPQGRLRVSSLSAFGLRHVMSAVADYATQHPQVTVDIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D AIR     ++SSSLI R++ T H+   A+P Y++    P S  +L
Sbjct: 127 LSDRVVELIDEGFDVAIRASPSGLKSSSLIARQVATAHLVLCASPEYIERHGAPKSAADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN+I +  +          +A  +   G  ++S  L VN   +     + G+ +ALL 
Sbjct: 187 TRHNIIQYSGVSA-----LELVAGANAESGRVKLSGNLIVNHLEAQRVVVLQGAALALLG 241

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             ++ D+     +V ++ D + P    ++  Y      + K+++F +FI  +
Sbjct: 242 TEVIGDDLAAGRVVPLLIDELPPRELPIHVVYASRRHLSAKVRSFVDFIAER 293


>gi|307727819|ref|YP_003911032.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588344|gb|ADN61741.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 325

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 129/292 (44%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF      GSF  AA +  LS +   + +S +ET++G +L  R  R L+LT+
Sbjct: 1   MDRLTGIAVFVAAVDEGSFAAAARRFGLSAAMAGKYVSTIETQLGARLLQRSTRRLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +    +    E  ++     G LR+A  +  G   L   L  ++   P 
Sbjct: 61  VGQTYYERCKRILEAYDEASREASDAHGTARGVLRVAAPVTFGAMHLGDVLAGYMEQCPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++ L ++ +D+     D A+R+ + +  S+L+ R+L    M   AAP YL+    P 
Sbjct: 121 VRVEVSLSDRYVDLVESGVDVAVRIGR-LPDSALVARRLAPCRMVVCAAPAYLERHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L     +TF + +   + D+    +  RP      S L  N+   ++   + G+GI
Sbjct: 180 SPEDLRNAPRLTFSEAV--SVGDWTLFDSQQRPHVIDGPSRLAANNTQMLLAAALAGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P ++  +      LV ++        T+   YP A     K++ F +++
Sbjct: 238 VYGPTFVFGEQIACGKLVELLPQYQASELTIQAVYPSARHLPLKVRHFLDYL 289


>gi|108762587|ref|YP_630007.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108466467|gb|ABF91652.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622]
          Length = 314

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 126/287 (43%), Gaps = 4/287 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L+ F  VAR+ SF+ AA  L +S+S++S+ +  LE ++ + L  R  R ++LTE G 
Sbjct: 11  FPHLQTFLAVARTRSFSAAARDLGISRSAVSQSVRLLEGKLRVPLVARTTRSVSLTEAGR 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L         +++    +      +  G++R+         +++  L +F   +P I++
Sbjct: 71  RLVESAGPAVTQVQAALTQASAKPGEVVGRVRLTVPRAAFHFVIEPVLPKFRERHPRIEV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+ +++ +D+  +  D  +RL + ++   +  R           +P YL     P   +
Sbjct: 131 DLVFEDRMVDLVGEGFDAGVRLSEYVERDMVSVRLTDAFRFIVVGSPTYLGRHGTPGRPE 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  +TF       +  +       R    P    L VN  L  +++   G G+A +
Sbjct: 191 DLLEHECLTFRSSTTGSLYAWE-FERGRRTWRVPVRGSLVVNDGLICIRWAEQGLGLAYV 249

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            + +V +     +L R++E         +  YP   +++  L+ F  
Sbjct: 250 MEPLVGEQLRKGSLQRVLEPYAATVPGFFLYYPSRAQSSAPLRLFVE 296


>gi|310825286|ref|YP_003957644.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398358|gb|ADO75817.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 306

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 121/293 (41%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   L     VA   SFT AA +L ++ S++S+ +  LE  VG++L  R  R + LT
Sbjct: 1   MRDELSGLTALLAVAEKRSFTAAAAELRVTPSAVSQILRALEERVGVRLLQRTTRSVGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++           +      L E   +P+G LR+       + +L   L  FL  YP
Sbjct: 61  EAGARFLAQIGPAMKSVHEAFESLGEMRDRPTGTLRLTLPRYGYEEVLAPRLAGFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+  L +D+  +DI  +  D  IR+ + ++   +       I M    +P Y+    +P
Sbjct: 121 GIKADLHIDDAFVDIVENGFDAGIRVGERVEREMIAVPVSGDIRMTVVGSPAYVAARGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL +H+ I         +  +       + +       +  N +  ++   V G G
Sbjct: 181 KHPRELREHDCINSRGRTGDGVYRWE-FKDGAKNLKLAVDGRVFFNEWDLMVGAAVDGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A +P+  V+       LV ++E         +  YP       KL+A  +F+
Sbjct: 240 LAYVPESRVRKLLAEKRLVSVLEPYCPLFSGFFLYYPSRAHVAPKLRALADFL 292


>gi|298293007|ref|YP_003694946.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929518|gb|ADH90327.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 301

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 119/294 (40%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VAR  SF  +A++  +S S++S  +  LE ++G++L  R  R +TLTE G
Sbjct: 5   DLSLLDAFVAVARQRSFRQSAKERGVSASTLSEAMRRLEEQLGVRLMNRTTRSVTLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          +     E+      P G LR+     + +  L   L +FL  YP++ 
Sbjct: 65  RRLFDRLVPALSDVGEALDEVNHFRDTPIGTLRLNVPTPVARGALAPLLPDFLAAYPELT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D + +D+     D   R  + +    +            YA+P YL     P   
Sbjct: 125 VEVHIDERFVDVVEGGFDAGARYGESLAQDMIAVPLGPPQRYGVYASPVYLARRGTPCVP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  I         +          R +       L  NS    M+  + G G+A+
Sbjct: 185 EDLLEHRCICHRFASGAVLPWE--FEKDGRTLRIEPRGPLISNSVDVEMRAAIDGIGVAM 242

Query: 244 ----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                   +V D   LV ++ED + P    +  YP        L+AF +F+  +
Sbjct: 243 NFTDFAAPMVAD-GRLVSLLEDWLPPFEGPFLYYPSRRHMPAALRAFVDFVRAR 295


>gi|254560085|ref|YP_003067180.1| transcriptional regulator [Methylobacterium extorquens DM4]
 gi|254267363|emb|CAX23198.1| Putative transcriptional regulator [Methylobacterium extorquens
           DM4]
          Length = 309

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 8/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     ++  F  V R GSF  AA+ L  + S++SR ++ LE  +G+ L  R  R LTLT
Sbjct: 12  MDNRLGEMEAFLQVVRRGSFAAAAKVLRQTPSAVSRAVARLEARLGVALLRRTTRSLTLT 71

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G       +++  +L+  +  L +++ +PSG+LR+  ++  G +++   L  FL  YP
Sbjct: 72  PEGEAYRDRAADLVAELDAIERGLTQTAAEPSGRLRVNASVPYGTHVILPVLPRFLAAYP 131

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L L ++ ID+    AD AIR+  P++ + L  R L    M   AAP YL     P
Sbjct: 132 RMSLDLALTDEVIDLPATQADVAIRIG-PLRDTRLRARSLGRSRMVVVAAPSYLAREGVP 190

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L ++N + F          F   + V +    P       NS   +    + G+G
Sbjct: 191 DHPDDLARYNCLNFSFRRSLDTWPFRAGSAVSQ---RPIQGNFFGNSGEVVRLMALGGAG 247

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L  + V  +    +LV ++E      +  V+  Y    +   ++++F +F+   A
Sbjct: 248 IARLARFHVAADLSAGHLVPVLEPFNPGDAEDVHALYVGHARLALRIRSFVDFLAAHA 305


>gi|167584727|ref|ZP_02377115.1| transcriptional regulator [Burkholderia ubonensis Bu]
          Length = 292

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 123/296 (41%), Gaps = 10/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF     +GS + +A    +S +     +  LE+  G+KL  R  R L LT
Sbjct: 1   MDL-LTSMEVFVRAVDAGSLSASAAACGMSATMAGNHLRALESRTGMKLLNRTTRRLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    E+   +       Q     PSGKLR+   +  G  +L   L ++L  YP
Sbjct: 60  EFGETYYARCQEILRLVSDADRHAQHRHTLPSGKLRVTAPVSFGNTVLVPALSDYLAQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++L L ++ +D+  D  D AIR+ KP   + L+ R L    M   A+P YL     P
Sbjct: 120 DIDVELTLSDRTMDLLDDGFDAAIRIGKP-ADARLVARPLAPYRMMVCASPAYLAAYGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL +H  ++F    P   +        ++         L +N    +    + G G
Sbjct: 179 THPDELVRHACLSFAVSAPASWK----FRQGEQTFTAKPSGRLTINQGEGLRNAALCGMG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I + P  +++ +     LV +  +   PS  ++  Y      + KL++F  F   +
Sbjct: 235 IVMQPAVLLEADVNAGRLVPLFGEYEMPSRPMHIVYLPD-NRSQKLRSFVEFALQR 289


>gi|331659194|ref|ZP_08360136.1| transcriptional regulator, LysR family [Escherichia coli TA206]
 gi|331053776|gb|EGI25805.1| transcriptional regulator, LysR family [Escherichia coli TA206]
          Length = 318

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 140/304 (46%), Gaps = 14/304 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     +R F    +  SF+ AA+ L +  S+ SR IS LE  + I LF R  RGLTLT
Sbjct: 8   MN-QLAAIRTFISTVKCRSFSSAAKLLKIEASTASRHISELEEYLNITLFIRSTRGLTLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++   ++  + E   +        PSG +R++     G+  +   +KEFL LYP
Sbjct: 67  ESGQYFYQHARQLLLQWEEICLLTSNRDKGPSGLIRMSVPATFGRLHIMPFIKEFLSLYP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + ++  ++  D++    D +IR    +  SS+  RKL +    A+A P ++KN    
Sbjct: 127 DISLDIMFSDEIQDLTETGIDLSIRTG-ILTDSSIHARKLASQTRRAWATPEWIKNNGPL 185

Query: 181 LSIQELDKHN----LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +S  E  ++     +I F  L            + D     P    L V+   +++  C 
Sbjct: 186 ISPDEYTEYPAVMEIINFSRL-QSAGWYIRKTGSGDDWHRIPVSYRLSVSDSDALLYACC 244

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF 289
             +GIA+LPD++  +     N++RI  +           ++  YP+      +++AF +F
Sbjct: 245 HHAGIAILPDWLSCEEARKGNIIRIFPEWEFSMSPGENAIWILYPQKRAMPYRIRAFIDF 304

Query: 290 IFLK 293
           I  K
Sbjct: 305 IIKK 308


>gi|221196325|ref|ZP_03569372.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221202999|ref|ZP_03576018.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176933|gb|EEE09361.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221182879|gb|EEE15279.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 318

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA SG+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G +  
Sbjct: 26  LHVFMSVATSGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYL 85

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + T   Y ++   + EL  +  +PSG LR+         ++   L  F   YP +++++ 
Sbjct: 86  QRTEAAYRQIAQARDELNAAHDEPSGLLRVTALPLARTQVIAPMLATFHRRYPKVRLEIR 145

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +N  +DI  D  D  IRL   +Q   +  R    +     A+P YL     P S+  LD
Sbjct: 146 YENALVDIVNDGFDAGIRLADRLQPGMIGVRIAPALSCALVASPDYLARRGAPASVAALD 205

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI--ALL 244
            H  I F    P+      WL     R +          N   +++     G GI  A +
Sbjct: 206 AHACIRF--RFPESGRLHKWLLRDGRRAVDLDPEGAFITNDADAVIDAARAGVGIAFAFI 263

Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + +D  +  LV ++         ++  Y        KL+AF + +  +AR
Sbjct: 264 RARVERDLRDGTLVEVLPGACRALPPMWLYYANRKHVPAKLRAFIDVLREQAR 316


>gi|171059850|ref|YP_001792199.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170777295|gb|ACB35434.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 309

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 118/277 (42%), Gaps = 6/277 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L ++  ++S+ ++ +E+ +G+ L  R  R ++LT +G         +  +++  +  L
Sbjct: 27  RELSITTPAVSKHLALMESRLGVSLVNRTTRRMSLTPEGELYLEHARRILGEIDDMEALL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             S   P G LR+  T+  G++ +   +  F+  +P +++QL L      ++ D  D  I
Sbjct: 87  GVSKATPKGLLRVNATLGFGRSHVAPLISRFVRKHPQVEVQLQLSVNPPPLTEDSFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R   P   + +I R +        AAP YL     P    +L +HN I    G+      
Sbjct: 147 RFGAP-PDARVIARHIAPNRRLLCAAPAYLAKHGTPKVPNDLSRHNCIGIRQGEEAYGVW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIM 259
              +                L  N     + + + G GI +  ++ ++ +     LV+++
Sbjct: 206 RLTSGRGKAATTEAIKTRGNLTTNDGEIAVNWALDGHGILMRAEWDIERHLKSGRLVQVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               TP   ++  YP+  +   +++AF +F+ L  R 
Sbjct: 266 PQCYTPDADIHAVYPQRHQLAARVRAFVDFVALSFRQ 302


>gi|170700819|ref|ZP_02891809.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134267|gb|EDT02605.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 313

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP 
Sbjct: 61  AGQRYLDRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P
Sbjct: 121 VAVELTLSQHVPDIIDEGYDVSLQLSSAELPDSGLVSQRLGDVHSVLCASPAYLKERGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+++L+ H+ +     I    + ++      R   E  +   QVN   ++      G G
Sbjct: 181 RSVRDLEAHSCLQIVTPI-FPRDRWHLDGPDGRETFELPLPDFQVNIADALGAALRAGLG 239

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP         +  LVR++ +      TVY  Y        K++ F +F+  
Sbjct: 240 IGSLPMSSAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 294


>gi|78059746|ref|YP_366321.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964296|gb|ABB05677.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 308

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 133/290 (45%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  VA  GSFT AA +++ + S +SR IS LET +  +LF R  R + LTE G +  
Sbjct: 1   MKAFVRVAEEGSFTGAASRMNTTTSYVSRAISALETHLRARLFNRSTRRIALTEAGERYM 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +++  ++  + E  ++  +PSG+LR+ +    GQ+ +   +  F   +P + + L 
Sbjct: 61  RRCEQIFASIDEAEAEAADAQARPSGRLRVHSPTSFGQSYVVPAVVAFRKQHPAVSVDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L  K  D+  +  D +++L    +  S LI ++L  +H    A+P YL     P S+ +L
Sbjct: 121 LSQKVPDMLEEGYDVSLQLTATTLPDSGLISQRLGVLHSVLCASPSYLARHGLPRSVADL 180

Query: 187 DKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           D H  +     L P  +  F+     D P   P  S L VN   ++       +GI  +P
Sbjct: 181 DGHQCVPIVSSLFPHDLWHFDG-PHGDEPFRLPPASFL-VNGADALATALREEAGIGAVP 238

Query: 246 DYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                    +  LVR++ +      T +  YP       K+K F   +  
Sbjct: 239 MPTALPAMRSGALVRVLPEHTLQPLTAHVLYPSRQYLDAKIKTFIEALHA 288


>gi|269963787|ref|ZP_06178104.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
 gi|269831467|gb|EEZ85609.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
          Length = 309

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +       E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 72  YDQSIAMVNAAQQAVELSAEDHAEPTGALTVAAPEAFLNSVLQPFVLPFLERYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+     D A +L       +L+ +++   ++   A+P YL     P    EL
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDK-PDENLVLKEISKTNLVLCASPDYLTKRGMPKHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++H+ I   +     +  F      +            VN     +     G GI +  D
Sbjct: 191 EQHDCIYLAENDKDNIWSF---FKEEAFHSIAVSGRYAVNHSQMRLNGVKSGLGIGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++KD      +V ++ D +  S     +   Y +      +L+ F +F+  
Sbjct: 248 FVIKDALEQGEVVEVLPDWMIKSNYHGAIAMQYAQTKYMPARLRVFIDFVKE 299


>gi|229505966|ref|ZP_04395475.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229510180|ref|ZP_04399660.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229517691|ref|ZP_04407136.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229605498|ref|YP_002876202.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|229345727|gb|EEO10700.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229352625|gb|EEO17565.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229356317|gb|EEO21235.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229371984|gb|ACQ62406.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
          Length = 319

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 19  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 78

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 79  YDQSLLMVNAAQQAIEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 138

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+   +L
Sbjct: 139 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPIHPTDL 197

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 198 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 253

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 254 DFVVQDALAAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 306


>gi|50121159|ref|YP_050326.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611685|emb|CAG75134.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 298

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 126/289 (43%), Gaps = 11/289 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + +  + F  VAR  SFT AA QL +SQS++S  I  LE  +GI+L  R  R +++TE G
Sbjct: 5   NINDYQAFIAVAREQSFTKAAAQLGVSQSALSYTIRTLEAHLGIRLLTRSTRSVSVTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E     L     KP+G +RI +     + LL   L   LL YPDI 
Sbjct: 65  ERLLSRIGPHFDQIEDEIAALSGMREKPAGTVRITSVEHAAETLLWPKLAPMLLKYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLS 182
           I++I +    DI  +  D  +RL + +    +I   L          +P YLK    P+ 
Sbjct: 125 IEIISEYGLKDIVAERYDAGVRLGEQV-DKDMISLPLAENFSFAVVGSPSYLKRKAVPVI 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGI 241
             +L  H+ I     +P     + W    +    + R+       +   + Q  +   G+
Sbjct: 184 PSDLSHHSCIKL--RLPTLGSIYTWEFYKEGNEIKVRVDGQGTFATISMMRQAALDSLGL 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           A LP   V     N  LV+++ D   P    +  YP   +++   +AF 
Sbjct: 242 AYLPKDTVDAELKNGKLVQVLADWCPPRPAYHLYYPSRKQHS---RAFM 287


>gi|104780518|ref|YP_607016.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95109505|emb|CAK14206.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 299

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 127/297 (42%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V    SF  AA +L +S ++++R +S LE ++G+KL  R  R + LTE
Sbjct: 1   MDQIHLMKVFVAVGELESFAAAARRLAISPAAVTRAVSALEEQLGVKLLLRTTRSVRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +    T  +   +          +  P G L +   I  G+  +   +  +L  YP+
Sbjct: 61  AGGRYLEDTRHILASIVEANEAAAGINAAPKGDLAVTAPILFGKKFVMPCIVRYLQQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +     ++ +++  +  D A+R+ + +  S L   ++  +     A+P YL+    P 
Sbjct: 121 VDVSAYFLDRVVNLVEEGMDVAVRIGQ-LPDSGLKALRVGKMRRLLCASPEYLERHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL +H +I  G L P+    F     +D P        L V S  + +     G GI
Sbjct: 180 HPSELQRHEVIAAGTLSPRTDWRFG---AIDDPTLIRMKPRLTVTSNDAAIAAASAGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L  Y V D      L  I+ +     + ++  + E+   + K++ F + +    R
Sbjct: 237 ARLLSYQVADEVAAGRLQVILAEYEEAPWPIHILHRESKYGSTKVRTFIDMLAEHLR 293


>gi|134284333|ref|ZP_01771016.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|226943764|ref|YP_002798837.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|134244310|gb|EBA44425.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|226718691|gb|ACO77862.1| transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 291

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 126/293 (43%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  V ++  F  AA+ L +  S++SR+IS LE  +G++L +R  R + LTE G 
Sbjct: 5   LKDMALFVEVVKAKGFRSAADALGMPNSTLSRRISELEKSIGLRLLHRTTRKIELTEAGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +       L E   +PSG LR +  +D     L   + EF  LYP I  
Sbjct: 65  IYFERCKRIVDEARLAHEHLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFASLYPGIIF 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L  + +D+  +  D AIR+ +  ++S LI R L T+  + YA+P YL+   EP    
Sbjct: 125 DFDLTPRRVDLVSEPFDVAIRMGES-ENSQLIARTLATLTPYLYASPGYLERSGEPSKPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL++H            + D    ATV             +NS   + +   L  GI LL
Sbjct: 184 ELERHECFNILRAGTWTLHDDKKTATVSVG------GRFSLNSVGMLRRLATLDMGIILL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P+ IV D   +  L RIM         VY    E      K + F  F+  + 
Sbjct: 238 PEEIVADELVSGKLRRIMPQWHGTPQPVYAMT-ETRLLPAKTQRFIEFLRERL 289


>gi|292489435|ref|YP_003532322.1| HTH-type transcriptional regulator YcaN [Erwinia amylovora
           CFBP1430]
 gi|292898348|ref|YP_003537717.1| LysR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291198196|emb|CBJ45302.1| LysR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291554869|emb|CBA22768.1| Uncharacterized HTH-type transcriptional regulator ycaN [Erwinia
           amylovora CFBP1430]
          Length = 293

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 131/294 (44%), Gaps = 18/294 (6%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+F     + +F +VA  GSFT AA +  L +SS+S++I+ LE  +G++L  R  R L L
Sbjct: 1   MAFKQLQDMALFALVAGCGSFTAAATRAGLPKSSVSQRINQLEQTLGLRLINRTTRQLNL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G +      E+    E   + ++     PSG+LRI +   +   LL      F   Y
Sbjct: 61  TFAGERYLVHCQEIVQASERAGLAIERLRDNPSGRLRITSPAGIAATLLARVNTAFQQKY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ +++ + ++  D+     D A+R  KP Q SSLI R++        A+P YL +   
Sbjct: 121 PDVTLEVSVSDEMCDLVQSRFDVALRTGKP-QDSSLIGRRIGDGQRRLVASPGYLADYPP 179

Query: 180 PLSIQELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               ++L +H  I        L+ +  E + WL                 ++ L   +  
Sbjct: 180 LAHPRQLSEHRCIAHRAWNEWLLQRNDEYYRWLL----------PPTHMTDNLLYARECA 229

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +   GI LLP ++  +   LV+++         ++  YP    N+  L  F +F
Sbjct: 230 LSSGGITLLPRFLCCE--KLVQVLPAWEVEGNELWLVYPSRKLNSPALSRFVDF 281


>gi|300702562|ref|YP_003744162.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299070223|emb|CBJ41514.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 303

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 121/294 (41%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F  V   GS   AA    ++   I R+I+ LE  +G++L +R  R + +TE
Sbjct: 1   MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVRLLHRSTRRIVVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG+       +   +L+  ++ + E   K +G L ++     G+  +  +  +FL   PD
Sbjct: 61  QGAVFMEQCKKALSELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPDFLRANPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++   L ++ +D+  +  D  IR+   I   + +  +L +        P Y      P 
Sbjct: 121 VRLSFNLTDRVVDLVREGYDLGIRIGGAI-DPNFVAIRLASNKRVVCGTPAYFARHGVPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +HN + F     +    +       R +       L  N    + ++     G+
Sbjct: 180 TLDDLSRHNCLAFNLQGGQQRGWY--FQHHGRMVTVKVSGNLDCNDGELLHRWMGESLGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                + ++   ++  L+ +++D   P + +   YP+      K++ F   +  
Sbjct: 238 GWRSTWEIQPELESGALMTVLDDYALPDYDILAVYPQQRPVPAKIRFFIEHLKA 291


>gi|270260953|ref|ZP_06189226.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044437|gb|EFA17528.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 303

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 7/298 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +  L VF      GSF+ AA  L ++ ++ S  +  LE  +G++L  R  R L LTE+G
Sbjct: 3   SFIDLDVFVRTVDGGSFSEAARALDITPAAASIAVKRLEQRLGVRLLVRSTRSLRLTEEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +           L   +  ++E     SG L+I+   D G+NLL G L EF L +P IQ
Sbjct: 63  RRYLDSARLALGALAEGEQAIREKHQGLSGVLQISAPSDFGRNLLLGWLDEFKLQHPHIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLS 182
           +QL+++++  D+  +  D A+R  + +  SSL+   ++  H     A+P YL+    P +
Sbjct: 123 LQLLINDRQADLFREPVDIALRFGQ-LADSSLVALPILPQHRRLICASPAYLQRYGVPQT 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +H ++ +     +  E   W    D  I  P       +      ++ + G GI 
Sbjct: 182 PAELAQHGILIYQPSGRRQAEWRLWRG--DECIEVPLNGHYFTDDGEVARRWALAGHGIV 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 V  +     LV+++ +  + +  +    P   + + +++  + F+  + + W
Sbjct: 240 RKSAIDVVADIHAGRLVQLLPEWQSDAVPISLVCPHRSQVSERVRLLQRFLQQRCQGW 297


>gi|254000351|ref|YP_003052414.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253987030|gb|ACT51887.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 298

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 127/297 (42%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RV   V   G F  A+ QL +S ++++R +  LE ++G++L  R  R +  T+
Sbjct: 1   MDHIHLMRVLVAVGEQGGFAAASRQLDISPAAVTRAVGALEEQLGVQLVQRTTRNVRFTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +   +          + +P G L +   +  G+  +   + E++  YP 
Sbjct: 61  AGLRYYDDARAILQSIAEANEAASGINAEPRGTLSVTAPVLFGRMFVMPTIIEYMQRYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++     ++  ++  +  D AIR+   +  SSL   K+  +     A+P YL+    P 
Sbjct: 121 VKVNANFVDRVTNLVEEGMDVAIRIGN-LPDSSLRAVKVGQVRRVLCASPAYLEAHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H++I    L P+    F      D P        L V S  + +   + G GI
Sbjct: 180 IPADLLQHSMIVSNALSPRVEWRFE---GGDEPELVQINPRLVVTSNDAALSAAIGGLGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             L  Y V+   +  +L  ++E      + V+  + E    + K++AF + +  + R
Sbjct: 237 TRLLSYQVRSEVERDSLRLLLETFEESPWPVHVVHREEKYGSSKVRAFIDLMVERLR 293


>gi|298717381|ref|YP_003730023.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1]
 gi|298361570|gb|ADI78351.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1]
          Length = 303

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 138/297 (46%), Gaps = 6/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +L +F  V  +GSFT AA+ L L+++ +S  I  LE E+G+ L  R  R ++ T+ 
Sbjct: 2   INMQRLGIFVAVVEAGSFTGAAQTLGLTKAVVSFNIKQLEEELGVSLLIRSTRRVSATDT 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +    ++ H  E+   +++       G LRI TT + G  ++   L +F + +P +
Sbjct: 62  GERFYDRCLKLLHDAESALEDVRGDHAGLCGSLRITTTHEYGARVIVPALADFAVKHPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE--P 180
           +I  +  +K+ D+     D AIRL   +  SS   R +    + A AAP YL   ++   
Sbjct: 122 RIHHVSSSKNDDLIAGRFDVAIRLGH-LADSSHHARLIDQFDILAVAAPCYLHTLKDASI 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L     I    L                 +   + + +  +S  S++ + + G+G
Sbjct: 181 RDLSQLASAKWIAHSRLSTPLSWQVTMPEGESVLMSAYQPAMVTADSASSLLAFALAGAG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+LP ++V+D      LVR++ D   P   +Y  YP       K++ F +F+  + 
Sbjct: 241 VAILPVWLVQDEIEKGGLVRLLPDNQFPRQGIYALYPNTRHVPEKVRTFIDFLHDRL 297


>gi|325168818|ref|YP_004280608.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064541|gb|ADY68230.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 293

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 128/293 (43%), Gaps = 12/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ ++ F  VA  G  T AA +L L +S +SR++  LE+E+G++L  R  RG +LTE G
Sbjct: 3   SFEDMQTFVEVADGGGITVAARRLGLPKSIVSRRLVRLESELGVQLLARTTRGASLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +      + +  ++E  + E+   + +  G+LR+A     G       L E    +P +Q
Sbjct: 63  ASFREHAARMCLEMEVAREEI-APTGELRGRLRVAVPSSFGPRHFAPALAELARQHPLLQ 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +     ++ +D+  +  DC IR+   +Q S+L  RK+       +A P YL+    P   
Sbjct: 122 LHAHYSDRYVDLVAEGFDCGIRVGY-LQDSNLTARKIGAFAAGLFANPEYLRKHGVPRKP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G    K  +         R I        + +S L I +    G GIA 
Sbjct: 181 SDLLDHQAILQGTESWKVSDG-------SRTIVINAQGRFKADSALGIAEGTAAGLGIAA 233

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP  I +       LV IM D   P   VY   P     + K++   +F   +
Sbjct: 234 LPVVIAESYVAAGTLVPIMSDYGLPEIGVYIVRPPGSHVSRKVRVLIDFFVQR 286


>gi|300718459|ref|YP_003743262.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299064295|emb|CAX61415.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 306

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 130/295 (44%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+A  GSFT AAE+L +S++++S++I  LE   G+ L  R  R L LT  G 
Sbjct: 10  WIHLHWLTVLAEQGSFTRAAERLEVSKAAMSQKIKELEHLAGVPLVTRTTRSLRLTSAGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL     + + ++E +   +++S+    G +R+   +   +  L  ++  FL  +P +++
Sbjct: 70  KLVEELRQPFAQIEQSFFSVRDSAGPLRGLVRVTAPVAFARQQLVPHITAFLREHPQVRV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ + ++ +  D AIR    +  +  +   L T H    A+P YL     P + Q
Sbjct: 130 QLEVSDRLVSLASEGFDLAIRHSDTLPETH-VALPLCTTHAQVVASPAYLTQHGFPQTPQ 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H  + +          F      +  +          N+  SI    + G GIALL
Sbjct: 189 ALSDHQCLYYPRGTEMPRWTFASRQAGEESVTVNVSGPFATNNSESIRDAALDGLGIALL 248

Query: 245 PDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           PD+  +       LV ++ D  T    +  +Y   P + +    +  F +++   
Sbjct: 249 PDFSARAALSEGRLVEVLPDWQTVGAFAGMLYVVRPWSAQVPRAVSGFIHWLRAA 303


>gi|117919540|ref|YP_868732.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611872|gb|ABK47326.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 307

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 126/303 (41%), Gaps = 15/303 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +  +VF  +   GS   AAE L +S+S ++R ++ +E   G +L +R  R L+LT+
Sbjct: 1   MDRLEAAKVFVTIVERGSMIGAAEALDMSRSMVTRYLAEMEEWSGARLLHRSTRRLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    +         S +P G LRI+ +  +   LL   ++ +L  YP 
Sbjct: 61  AGEQVLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLLLPSVVRPYLAQYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             +   + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL +     
Sbjct: 121 ASVNFHVTSQTVDLVAERIDLAIRITNEL-DPTLIARRLGECESVVCAAPSYLASHSAIT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW---------LATVDRPIGEPRISCLQVNSYLSIM 232
             ++L +HN +T+       M  F              V +    P    L  N  + ++
Sbjct: 180 HPEDLTRHNCLTYS-YFGDVMWRFTQTPIAVKATPTQEVGQIFNIPVKGNLSANDSMVVL 238

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + G GIA+ P +  K   D+  LV ++ +    S  VY  Y         L+   + 
Sbjct: 239 NATLAGEGIAMQPLWAAKPHLDSGALVPLLREFKPQSLGVYGVYQSRKHMQPALRVMMDM 298

Query: 290 IFL 292
           +  
Sbjct: 299 LVQ 301


>gi|127511757|ref|YP_001092954.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126637052|gb|ABO22695.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 301

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 140/301 (46%), Gaps = 16/301 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA  GSFT AAEQL LS+  +SR I  +E  +G++L +R  R ++L+ 
Sbjct: 1   MDKISAIRSFVEVASCGSFTQAAEQLGLSRLQVSRHIQEVERWLGLRLLHRTTRSVSLSV 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG +      ++  ++   Q   Q    +  G +RIA+ I LGQ LL   + +F   +P+
Sbjct: 61  QGEEAFIYCQKILDEVAALQNRAQRHRQELVGSIRIASPIGLGQALLFDAVDDFTREHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL L ++ + +  +  D A+R  +     SLI R+L+ I     A+P YL       
Sbjct: 121 VKVQLQLSDEMVQLVDERVDIALRYTQQ-PDESLIARRLMHIDSVLCASPDYLAGHEPIT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ ++  HN +              WL   D    E +IS  LQ N    +++  + G G
Sbjct: 180 SLDDITAHNCLLHASQT-------RWLFVKDNQNIEKKISGNLQANDMGVLIKAAMRGKG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  LP  +   +     LV ++ +   P  T++  Y         ++ F +F+  +   W
Sbjct: 233 LIHLPCDLANAHLASGELVELLPEYHLPGKTLWAVYLSRSYQQHLIRHFIDFLAER---W 289

Query: 298 K 298
           +
Sbjct: 290 Q 290


>gi|206559305|ref|YP_002230066.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035343|emb|CAR51218.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 310

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 124/299 (41%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     SGK+R+++T D G++ L   L EF  L+P 
Sbjct: 61  EGKLYLNCCRQALQALDDADAMLQEGRNVVSGKVRLSSTSDFGRHQLLDWLHEFTTLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L   +   ++  D  D AIR   P    +LI R+L T      AAP +++    P 
Sbjct: 121 VTFSLTASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLATNRRVLCAAPSFVERHGVPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPHDLARFPCNVITIASGPMNTWHFTRGDEVQIHTVPVSTAFETNDGGLTREWTLRGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           AL   + + D+     L  ++ +       ++  Y        +++   +F+  + AR+
Sbjct: 240 ALKSLWDIADDVRAGRLRVLLPEWRHQDAPLHAIYHSKRYMAPRVRVLLDFLAERFARE 298


>gi|307318686|ref|ZP_07598119.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306895713|gb|EFN26466.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 303

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 128/299 (42%), Gaps = 7/299 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G +  AA    + +S +SR++  LE  +G++L  R +R  ++TE G
Sbjct: 3   DLNDLYYFVQVVDHGGYAAAARANDIQKSKLSRRLQQLEERLGVRLLNRSSRRFSVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +  + E     + +   +P G +R++  + L           FL  YP ++
Sbjct: 63  REYYDRCVAMLVEAEAADQVIAQVRSEPRGIVRVSCPVALINFQFGELFARFLTAYPAVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ + L+ R+L        A+P ++   R   S
Sbjct: 123 IHLESTNRRVDVIAEGFDIAIRVRFPPLEPTDLVMRRLDASTQCLVASPAFVAG-RSITS 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H+L +     P+    +       +    P +  L  +   ++    + G G+ 
Sbjct: 182 PADL--HDLPSVTRGPPRRDYQWQLEHADGQTATVPHVPRLVSDDMAALCDAALAGVGVV 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            LP  +V    +   LV ++ D   P+  V+  +P        ++   +F+  +  + +
Sbjct: 240 SLPTMMVWRQVEAGQLVHVLPDWRPPAGIVHAIFPSRRGLLPSVRTLLDFLAAECAEAR 298


>gi|293606407|ref|ZP_06688767.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292815267|gb|EFF74388.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 298

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  +AR  SF  A E+L LS S++S  I  LE  +G+ LF R  R + LT+ G
Sbjct: 5   NLSHLAAFAALARHCSFRRAGEELGLSTSAVSYAIRSLEERLGVNLFNRTTRSVALTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L        + L     E+       SG LRI T+      LL      FL  YPDI+
Sbjct: 65  QRLAERLLPALNDLGDALEEMNHFRGSASGTLRINTSRAASYMLLMPMAASFLAAYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  D+  +DI     D  +RL + +    +  +    +     A+P Y+     P   
Sbjct: 125 LEIAEDDSFVDIVASGFDAGVRLLEAVPEDMVAVQIGPALRAAVVASPDYMAGRPLPRHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL +H  + +     +    + W    D    E  +   + ++   + ++  V G GI+
Sbjct: 185 DELLRHECVRYRFPSGRY---YKWEFEKDGDAIEVDVTGRIALSDVHAELRAAVDGIGIS 241

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P++  +D   +  LVR+++D           YP   + +  L+AF +
Sbjct: 242 CVPEHYARDGLQSGRLVRMLDDWCPTIPGFMLYYPRQRRVSSALRAFID 290


>gi|260770545|ref|ZP_05879478.1| putative LysR-family transcriptional regulator [Vibrio furnissii
           CIP 102972]
 gi|260615883|gb|EEX41069.1| putative LysR-family transcriptional regulator [Vibrio furnissii
           CIP 102972]
          Length = 307

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 138/292 (47%), Gaps = 7/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +AR  SFT AA ++ ++++++S+ +  LE ++ ++L  R  R ++LT++G +L 
Sbjct: 11  LTWFTHIARHRSFTKAASEMGVTRAALSQHLKALEQQLQVRLLNRTTRNMSLTDEGQRLL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +       +E    EL ES ++PSG +RI+++    + L++ +L EFL  YP I+++L+
Sbjct: 71  DILHPSLTNIEQVVSELNESHIEPSGLIRISSSRTAARLLIEPHLGEFLARYPKIRLELM 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+   +I  +  D  IRL   +    +       +      +P Y K    P S ++L+
Sbjct: 131 MDDGFTNIVAEGLDAGIRLGVSLDEHMVAVPITPPLTTAIVGSPAYFKQHGIPQSPKDLE 190

Query: 188 KHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243
            HN + +       ++ ++  A        + EP+ + +  N   S++Q  + G G+   
Sbjct: 191 THNCLAYRFTSSGTLDHWSLTAPDSDQHTVVFEPKGNAV-FNDDYSMLQAAIQGVGLVKH 249

Query: 244 --LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             L  +    +  L R++     P    Y   P       K++   +F+  K
Sbjct: 250 IDLWVHGAIQDGRLTRVLTPWCKPFPGFYLYIPSREHMPKKIRVLMDFLIEK 301


>gi|114046663|ref|YP_737213.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113888105|gb|ABI42156.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 307

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 126/303 (41%), Gaps = 15/303 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +  +VF  +   GS   AAE L +S+S ++R ++ +E   G +L +R  R L+LT+
Sbjct: 1   MDRLEAAKVFVTIVERGSMIGAAEALDMSRSMVTRYLAEMEEWSGARLLHRSTRRLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    +         S +P G LRI+ +  +   LL   ++ +L  YP 
Sbjct: 61  AGEQVLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLLLPSVVRPYLAQYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             +   + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL +     
Sbjct: 121 ATVNFHVTSQTVDLVAERIDLAIRITNEL-DPTLIARRLGECESVVCAAPSYLASHSAIT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW---------LATVDRPIGEPRISCLQVNSYLSIM 232
             ++L +HN +T+       M  F              V +    P    L  N  + ++
Sbjct: 180 HPEDLTRHNCLTYS-YFGDVMWRFTQTPIAAKATPTQEVGQIFNIPVKGNLSANDSMVVL 238

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + G GIA+ P +  K   D+  LV ++ +    S  VY  Y         L+   + 
Sbjct: 239 NATLAGEGIAMQPLWAAKPHLDSGALVPLLREFKPQSLGVYGVYQSRKHMQPALRVMMDM 298

Query: 290 IFL 292
           +  
Sbjct: 299 LVQ 301


>gi|119387016|ref|YP_918071.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377611|gb|ABL72375.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 303

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 129/292 (44%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R F  V  +GSFT A E+L +S   +S+ ++ LE + G+ L  R  R L+LT 
Sbjct: 1   MDRIDGIRAFVAVVDAGSFTRAGERLGISNKLVSKYVAALEGQQGVTLLNRTTRALSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V   +E    +        +G+LRI   +  G+       ++F  ++P 
Sbjct: 61  AGERYLTAARRVLAAVEELDAQAHAEEGALTGRLRITAPVAFGEMFATTLTRDFARVHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L L ++ +D++ +  D A+R+ + +  SSLI R++        A+P YL     P 
Sbjct: 121 IDIDLNLSDRYVDLAAEGFDLALRIGQ-LPDSSLIARRIGQTETWVVASPAYLAAHPRPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  I   +        F       + +  P    + VNS  ++ +  + G G+
Sbjct: 180 RPEDLRDHVNIRDSNAQNPGRAVF---LIEGKAVSVPLPGRITVNSAQAVRRLVLEGEGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL+P ++V  +     L R++   + P   +   Y        +L A+ + +
Sbjct: 237 ALIPSFVVARDVAEGRLERLLPGFVRPQLDIQALYLPRPFLPPRLTAYLDHL 288


>gi|32033547|ref|ZP_00133874.1| COG0583: Transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208384|ref|YP_001053609.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           L20]
 gi|126097176|gb|ABN74004.1| putative transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 294

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  +FT AA +L +SQS++SR I  LE+ +G++LF R  R L+LT  G
Sbjct: 6   NYNDLYAFLCVAREQNFTKAATKLGISQSALSRTIKQLESRLGVQLFARTTRRLSLTHAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L +   + + KL+     L      PSG++RI  +      +L   L +F   YP+IQ
Sbjct: 66  NQLFQTAEQTFSKLDHELAMLGHYRQTPSGQVRITASQYAIDKVLLPKLAKFQTRYPEIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI D    DI  +  D  +R    +    +  R      M    +P+Y      P + 
Sbjct: 126 LELISDTAFSDIISEQFDAGVRFGDLVAEGMIAVRISNDEEMAVIGSPNYFHTHGFPRTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +       M  ++++   +    + +      N Y SI     LG G+  
Sbjct: 186 SDLAHHQCLNYR-YASGAMYHWDFIVNHEHVQIKTQGQWTFSNDY-SIRDAAKLGFGLGY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +   +V+   +   L++++ +        +  YP     +  LK   +
Sbjct: 244 ICKDLVQKELEKGELIQVLSEFSYTFAGFHLYYPH-RNISPALKCVID 290


>gi|323528343|ref|YP_004230495.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385345|gb|ADX57435.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 312

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 128/293 (43%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  VAR  SF  AA +L ++ S+IS+ +  LE  +G  LF R  R + LTE G 
Sbjct: 12  LDGVEAFLCVARHRSFRRAAAELGVTPSAISQAVRVLEERIGAALFVRTTRSVGLTEAGQ 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        + +L       ++   +P G LR++    +   LL   +  F   YP++Q+
Sbjct: 72  QFLSRAKPAFEELVAASDAARDLGQRPRGLLRLSVPRAVVPLLLDPLIASFHEAYPEVQV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   N+ ID++ +  D  IRL + +++  +       + +    +P Y      P    
Sbjct: 132 EIAASNQLIDLASEGFDAGIRLGQFVEADMVALPLTPPLRLVVVGSPAYFTGRSRPEHTD 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +H  + +            W    D    E  +S     + + +++   + G G+A 
Sbjct: 192 DLRQHACLRWRK---SSGALAPWSFNNDGNAVEIAVSGPFIAHDFPTMLGAAMEGIGLAQ 248

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP+ +V +   +  L+ +++ +      V+  YP   +   KL+AF + +  +
Sbjct: 249 LPEPMVAEGLQSGKLIEVLKPLAPVIPGVFLYYPSRRQLMPKLRAFIDHVKSR 301


>gi|262279328|ref|ZP_06057113.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259679|gb|EEY78412.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 299

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 142/297 (47%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D    F +V   G F+ A     + +S +SR++  LE  +G++L  R +R   +T
Sbjct: 1   MLTDLDDFYCFALVVEHGGFSAAERVTDIPKSKLSRRVYSLEENLGVRLIQRSSRHFAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++R    + +  +     +   S++P G ++++  +D+ QN L   L  FL  YP
Sbjct: 61  DIGMDIYRHAQVMMNAAQAAHDLVDHLSIQPRGVVKVSVPVDIAQNQLPKILPAFLKKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I++QL++ N+ +D+  +  D A+R+R  +    SL+ R+   I    +A+  YL    +
Sbjct: 121 EIRLQLMVSNRRVDVINEGIDIALRVRSKLDDDPSLVLRQFALIEQSLFASQAYLNEFGD 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLG 238
             + ++L +H +++  +   + ++    L   D    + ++S + +  +   + Q     
Sbjct: 181 IKNPEQLSEHRILSLSE---EHLDQQFILHGPDNQQKKIKVSPIVMGTNIHMLAQLASQN 237

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIALLP+   +D   +  L++I+ +   P    +  YP        ++ F +++  
Sbjct: 238 CGIALLPESAAEDFLKSGQLLQILPEWKAPHGVFHAVYPSRRGLLPAVRVFIDYLVE 294


>gi|239820048|ref|YP_002947233.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239804901|gb|ACS21967.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 303

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 146/298 (48%), Gaps = 10/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D LR F  VA SGSF+  A+ L LS+ ++S+ I+ LE   G++L  R  R ++LT+
Sbjct: 1   MDSLDLLRTFSEVASSGSFSRTAKHLALSRGTVSKYIAALEHRFGVRLLNRTNRAVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L   +  +    + T+ ELQ+ +  PSG+LR++    +    L   + +FL  YP+
Sbjct: 61  AGLLLLDRSRPILELADVTRAELQDRARVPSGRLRVSAPHGMDLTQLPALINDFLGHYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L+L N+ +D++ +  D A+R   P  + +LI RKL+ + +   AAP Y +    P 
Sbjct: 121 VSISLVLSNRLVDLTEEGVDIALRFA-PSANENLIVRKLMPMALSVCAAPMYWRKHGVPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSG 240
              EL  H  +    L P       W    DR PI       L       ++Q  +LG+G
Sbjct: 180 HPDELAHHAALISTQLNPLP----KWRFEADRQPIEVAVRGRLDATEASPLIQAALLGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  LP  +++   ++  LV ++   +     +   Y +   +T   +AF +F+ ++ +
Sbjct: 236 VVYLPSVMLEPYIESGRLVPVLPTFVRSDMWLSAVYLQRRHSTAVQRAFLDFLAVRLK 293


>gi|160899021|ref|YP_001564603.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364605|gb|ABX36218.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 310

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 133/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ +F  V  +GSF+ AA QL  + S+ SR ++ LE  +G++L  R  R L L+E G 
Sbjct: 10  FGEMAIFVKVVDTGSFSEAARQLGSTPSATSRGVARLERALGLRLLERTTRKLRLSEAGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++H    ++    +           +P G +RI+    +G+ ++  ++ +FL LYP++ +
Sbjct: 70  EVHARCLDMVGAAQAVMAASLRQDAQPRGLVRISVPKAVGRTVVHPHMPDFLALYPEVDV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L+++ +D+  D  D AIR+        L+ R L+ I     A+P YL     P+   
Sbjct: 130 QMRLEDRYMDLIDDPVDLAIRITNH-PPPGLMGRHLMDIDHLLCASPQYLARHGTPVHPL 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ I  G+           L    + +          N     +   +   GIA L
Sbjct: 189 ELKAHSCIYLGEEPGDAHWK---LRGHGKTVTVAVRGRYAANHTGVRLDAVLQHIGIASL 245

Query: 245 PDYIVKD---NPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +  ++   +  +V+++ D       S  ++  +P       KL+   +F+  + 
Sbjct: 246 PRFTAREALADGRIVQVLPDWNFLPNYSGQLWILHPPTRHLPLKLRVLMDFLAERL 301


>gi|170692366|ref|ZP_02883529.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142796|gb|EDT10961.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 321

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 124/300 (41%), Gaps = 13/300 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + + A  +  LS +  S +I+ LE  +G +L +R  R ++LT+
Sbjct: 21  RLDLLDVALFVRAALLANVSAAGREFGLSAAVASSRIAQLEKLLGARLLHRTTRRISLTQ 80

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +       +  +    V+P G+LR++     G+  +   + EFL  YP 
Sbjct: 81  DGEVFMTRAEALLDAAAAARASVGRGQVEPQGRLRVSMPSSFGRQHVSPVISEFLRRYPG 140

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ ID+     D AIR+   ++ SSL+ R+L        AAP YL+    P 
Sbjct: 141 VSVDLRLTDQVIDLVDAGIDVAIRIG-TLKDSSLVARRLAVNRRVLCAAPSYLEERGTPH 199

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
              +L +H  I   D         +W         + R+S  +  ++   I    + G G
Sbjct: 200 HPSDLAQHECIILSD-------QRDWAFHTPAGRLDVRVSGRIVSDNGEVIRDALLAGFG 252

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IAL   + V     +  LV ++E+        ++  YP       K  AF +F+     D
Sbjct: 253 IALKSTWDVASLLRSGELVSVLENYPLAEQVAIWAVYPSRAFVPPKTLAFIDFLAAHFGD 312


>gi|311695609|gb|ADP98482.1| transcriptional regulator, LysR family protein [marine bacterium
           HP15]
          Length = 296

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 15/301 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L     V  SGSF+ AAEQL +S + +SR ++ LE  +   L  R  R + LT
Sbjct: 3   MKSRSDDLHFLLSVVDSGSFSGAAEQLEVSVTRVSRAVTRLEASLNTTLLNRTTRKVALT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G             LE  + +L     +P+G+LR+        + +  +++EF   YP
Sbjct: 63  EEGHLFVETVRGGLAALEEAEEQLAIRKQRPAGRLRVDAANPFLLHQIVPHVREFRAAYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L   ++ +D+     D AIR+  P+  S+L  R L    +   A+P YLK   + 
Sbjct: 123 DIELELTASDQIVDLLERRIDIAIRIG-PLDDSTLHARVLGRSPLSVVASPEYLKRKGDC 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  +L +H++I F                     G      ++ +S  ++ Q C+ G+G
Sbjct: 182 DSPADLQEHDIIGFTAPESLNFWHLG--------EGMRVRPTIRASSGEAVRQLCLQGNG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L  +++ ++    +LV +++D +        V   Y        +++ F +F   + 
Sbjct: 234 IAYLSRFMIAEDLGKGSLVEMLDDYVARPNPRELVNAVYYRNTTLASRIQVFLDFFTHRW 293

Query: 295 R 295
           R
Sbjct: 294 R 294


>gi|167572797|ref|ZP_02365671.1| transcriptional regulator [Burkholderia oklahomensis C6786]
          Length = 322

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 125/293 (42%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    P
Sbjct: 60  ESGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L KH  +          E        D  + E   +  Q N   ++      G G
Sbjct: 180 TTPEDLAKHVCLRLDTPASPGGEWRLERDDGDETVYELPPAPFQANVPDALSVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F + +
Sbjct: 240 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHL 292


>gi|110807105|ref|YP_690625.1| putative DNA-binding transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|110616653|gb|ABF05320.1| quorum sensing Escherichia coli regulator A [Shigella flexneri 5
           str. 8401]
 gi|281602621|gb|ADA75605.1| Quorum sensing regulator A [Shigella flexneri 2002017]
 gi|313648514|gb|EFS12956.1| HTH-type transcriptional activator aaeR [Shigella flexneri 2a str.
           2457T]
 gi|332752406|gb|EGJ82796.1| HTH-type transcriptional activator aaeR [Shigella flexneri 4343-70]
 gi|332765243|gb|EGJ95470.1| quorum sensing transcriptional regulator of LYSR-type [Shigella
           flexneri 2930-71]
 gi|332998364|gb|EGK17963.1| HTH-type transcriptional activator aaeR [Shigella flexneri VA-6]
          Length = 309

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 129/287 (44%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP +  
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++++++   G+GIA +
Sbjct: 183 DLSSHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P  +++ +     L  ++    +    VY  Y E  K   K++   N
Sbjct: 240 PLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 286


>gi|189352503|ref|YP_001948130.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189336525|dbj|BAG45594.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 300

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 140/294 (47%), Gaps = 6/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D++ L  F  VAR  +FT AA Q+ +SQS++SR ++GLE  +G++L  R  R ++LT
Sbjct: 1   MKEDFNDLVGFMTVARERNFTRAAAQMGVSQSALSRTVAGLERRMGLQLLTRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +  + ++E     L+  + +PSG +RI TT    ++ +   L+  L  YP
Sbjct: 61  EAGDRLLSAIAPRFEEIEAEVDSLRAMTNQPSGTVRITTTDYAAKSYVWPRLQSLLRQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I+L+ D    DI  D  D  +RL   +    +  R    + M    +P YL++    
Sbjct: 121 ELKIELVNDYGLSDIVADRYDIGVRLGDQVAKDMVAVRIAPDMTMTVVGSPSYLQSKPHA 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            + Q+L  HN I     +P       W     R   + R+   L  N+   +++  + G 
Sbjct: 181 RTPQDLTLHNCINL--RLPTRESLLPWELRKGRRELKVRVEGQLTFNNVYQMVEAALGGF 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A +P  +V+D      L  ++ED        +  YP   K++  ++     +
Sbjct: 239 GLAYVPKDLVEDKVRAGRLCWVLEDWYPTFVGHHAYYPNRRKSSRAVELVIEAL 292


>gi|167587086|ref|ZP_02379474.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 308

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 120/293 (40%), Gaps = 11/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + T A  +  +S +  S +I+ LE ++G +L +R  R +++T+
Sbjct: 7   PLDLLDVGLFVRAALLANVTAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISVTQ 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P G+L+++ +   G+  +   +  FL  YP 
Sbjct: 67  DGEIFMARAEALLAAADAARASVGHGRTEPYGRLKVSMSSSFGRQHVAPVIPAFLRRYPS 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  D AIRL   ++ S+L+ RKL         +P YL     P 
Sbjct: 127 VSLDLRLSDEIVDLVDEGIDVAIRLGA-LKDSTLVARKLAVNRRVVCCSPAYLAEHGAPR 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +  GD             T   P        L  ++  +I +  V G GI
Sbjct: 186 HPADLAQHECVILGDQRDWS------FVTPQGPRTVRVGGRLVASNGEAIREALVNGFGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+   + V        LV +++D        ++  YP       K  AF  F+
Sbjct: 240 AIKSTWDVAPQLARGALVTVLDDYPLADEVAIWAVYPSRAHVPLKTLAFIAFL 292


>gi|119946301|ref|YP_943981.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
 gi|119864905|gb|ABM04382.1| transcriptional regulator, substrate-binding of LysR family protein
           [Psychromonas ingrahamii 37]
          Length = 293

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 132/295 (44%), Gaps = 14/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V ++GSFT AAEQ   S+S +S+Q+S LE  +GI L +R  R + LT+ G   
Sbjct: 5   EILAFLAVVKTGSFTRAAEQTKTSKSRVSQQVSSLEKTLGITLLHRSTRKIRLTDAGDAY 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQIQ 125
           +   S     LE  +  L E   + +G +R+ +      + +L   +  F+  YP ++IQ
Sbjct: 65  YSECSRAAAILEQARKNLNERQDQVAGLIRLNSVGGLFSEKMLAPAVIAFMKQYPQVEIQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  +D+  +  D  +R+ + + +SSLI RKL+ I     A+P ++K   +P   Q+
Sbjct: 125 LDFSSAQVDVIAESVDLVVRMGQ-LNNSSLIARKLMEIKTDVVASPAFIKKQGKPNHPQQ 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L + N +          +       +++         L   +   +    + G GI  L 
Sbjct: 184 LSQFNCLC-----GSIRKWHFQHKGLEKAQDVTVTGSLSSANGHILSMAAIEGLGIVRLN 238

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +           L+ + E    P+  V   YP+    T +++ F +F+     DW
Sbjct: 239 ELYTHQYLQTGQLIPVFEQWHIPAVPVSLIYPKVRYKTKRIQVFVDFLI----DW 289


>gi|255318048|ref|ZP_05359293.1| LysR substrate binding domain protein [Acinetobacter radioresistens
           SK82]
 gi|255304871|gb|EET84043.1| LysR substrate binding domain protein [Acinetobacter radioresistens
           SK82]
          Length = 302

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 142/298 (47%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +++L+VF  +  SGS   A+EQL    S +SR +  LE+++ + L  R  R L+LT
Sbjct: 1   MKSTFEELQVFVSIVDSGSIVKASEQLGQLTSGLSRILQRLESKLNVTLLERTTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G        ++ ++L   +  L +S  + SGK+RI +      +++   +++F+  YP
Sbjct: 61  QEGQLFLERARKIINELNDAEELLLKSDHEVSGKIRIDSATPFVLHVIAPLMQKFMQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I+L   ++ ID+     D AIR  + +  SSL  R L    ++  A+P YL+    P
Sbjct: 121 YIEIELNSHDQIIDLLEHRTDVAIRFGQ-LNDSSLHARLLTQSRLYIVASPAYLEQYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL +H LI F    PK +  +      +       I   + ++  ++ Q  +L  G
Sbjct: 180 QTAGELLQHQLIGFSS--PKHLNTWPLKLGNEYFTATAPI---RASNGETVRQLALLHHG 234

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  L +++V  +     LV + ED I   +  ++  Y +      +++    ++  + 
Sbjct: 235 ITCLSEFLVGQDLAQNRLVALFEDQIELHYQPIHAVYYQQEHLPKRVRLLIEYLVQEL 292


>gi|254501531|ref|ZP_05113682.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222437602|gb|EEE44281.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 297

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 9/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L VF  VA SGSF+ A   L L+++ +S  ++ LE   G+ LF+R  R L +TE G+
Sbjct: 8   LKSLMVFAQVADSGSFSAAGRHLGLTRAVVSYHVNKLEDAYGLSLFHRAPRSLKITEAGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +  +    Q  ++    +P G LRI+  + +G N +   L +F  LYP I++
Sbjct: 68  QLLGHCRVIMDETVAAQRAIERYKQEPEGVLRISCPVSVGLNHVVPVLGDFHRLYPKIKL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +  +DI  +  D AIR   P+  S L   +L TI     AAP+Y +    P +I 
Sbjct: 128 NVSFSDTVVDILEEGFDLAIR-GAPLPDSDLKATRLATISTCLCAAPNYFQTRSRPKTID 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +   +     +      + V  P G      +  N+ ++   +   G GI  +
Sbjct: 187 DLRDHQWVLHMNKQKVEILLPGGASKVFEPEG-----SITTNNAVARTAFVEAGHGIGRI 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P Y          L  ++     P   +Y  +P     +  L+   +F
Sbjct: 242 PRYDADPKIRAGLLEEVLPGTRLPEIAIYGVFPPGAAMSSNLRLLLDF 289


>gi|222083114|ref|YP_002542479.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221727793|gb|ACM30882.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 298

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L  F  V   GSFT AA +L LSQS++S  +  LE  + ++L  R  R L++TE G
Sbjct: 5   DFSELAAFITVVEEGSFTRAAAKLGLSQSALSYAVRMLERRLDVRLISRTTRSLSMTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       +  +++    L     KP+G +RI T     + +L   L +    YPDI 
Sbjct: 65  ERLFNNLRPAFDHIDSEIAALTALRDKPAGTIRITTFRHAARMVLWPALLKLAPEYPDIV 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    DI     D  IRL + ++   +  R    + M    +P Y  N + P + 
Sbjct: 125 VEISVDEGLTDIVAGRFDAGIRLGEQVEKDMVSVRVSPEVRMAVVGSPSYFTNRKRPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L+ H+ +++       +  + W    D    E R+S  L +N    +    + G G+ 
Sbjct: 185 RDLNNHSCVSYRQSRGGGL--YAWEFERDGVELEARVSGSLILNDNEMLENAALDGLGLV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + +  V  +     L+R++ED   P    +  YP   ++T         +
Sbjct: 243 YVFESQVSQHIAEGRLIRVLEDWCPPFPGYHLYYPSRRQHTPAFSLLVEAL 293


>gi|87198895|ref|YP_496152.1| LysR family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134576|gb|ABD25318.1| transcriptional regulator, LysR family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 295

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 133/291 (45%), Gaps = 12/291 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  WD +     VA +G+F   A++L  S S +SR ++ LE  +G +LF+R  R +++T
Sbjct: 1   MSNRWDGIDEVVAVADTGTFVAGAKRLGTSTSHVSRAVARLEQSLGAQLFHRTTRAVSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L      +  + +   I + +   +P G+LRI     LG+  +   ++ ++  YP
Sbjct: 61  DTGRMLVDQFRRLIAERDEA-IAMLDLQGEPQGQLRITCPTALGERFVAPIVRAYVQEYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L + N+ +++  +  D AIR    +  S LI+ ++ T  +   AAP YL+    P
Sbjct: 120 KLSVDLDMSNRVVELVSEGYDLAIRTG-TLPDSRLIRTQIATRGIVTCAAPSYLEERGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H  I      P   + + +    ++    PR    + ++  ++    V G G
Sbjct: 179 QTVDDLLGHECI------PATSDVWRYRVDGEQRTIRPR-GRWRCSNGAAVFDAAVAGMG 231

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +  LP + V        LV ++++       ++  YP+      K++    
Sbjct: 232 LCQLPAFYVNRAIAAGQLVPVLDEFRPEDDPIWAVYPQRRHLLPKVQRLIE 282


>gi|315300274|gb|EFU59510.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
          Length = 308

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 143/302 (47%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 2   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 61

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G  L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 62  SLTEEGQHLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 122 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 181 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSNVVGGNEEFEIEVSGKYISNDDESMIRM 240

Query: 235 CVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++ N   L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 241 ALNGTGIIQHLDFAIAEHINASKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 300

Query: 292 LK 293
            K
Sbjct: 301 EK 302


>gi|182677955|ref|YP_001832101.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633838|gb|ACB94612.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 308

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 137/297 (46%), Gaps = 8/297 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+  D +   +F  V  +GSF  AA +L ++  ++S+ +  LE   G +L +R +R  +L
Sbjct: 1   MALPDLEAWAIFAKVVETGSFAAAAAELGITGPTVSKALGRLEARFGERLIHRTSRRFSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G  L    +++  + E  + E Q  S  P GK+R+A  +  G   +   L EFL +Y
Sbjct: 61  TETGRVLAIRAAQILAEGEAIEAEAQAKSATPRGKIRLAAPMSFGLRHVSPVLPEFLAMY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ I L LD++ +D+     D A+R+   +  SSL+ R+L  +H      P Y +    
Sbjct: 121 PNVSIDLQLDDRMVDLVASGIDVALRIAD-LPDSSLLARRLCPVHRWVVGTPSYFERHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PL  ++L  H  +++  L+   +  F     V+  +     + L  N+  ++      G 
Sbjct: 180 PLRPRDLASHACLSYNYLMSGEIWHFKDTKGVEESVSI--NARLSSNNAEALCASLEAGE 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIAL PD+I         L+ ++ D  +    +    P       + +   +F+  +
Sbjct: 238 GIALQPDFIAWQAVKAGRLIAVLTDWTSSPLALNLITPAG-PRAIRTQVLLDFLTRR 293


>gi|323525855|ref|YP_004228008.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382857|gb|ADX54948.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 294

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 131/289 (45%), Gaps = 7/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GS T AAE+  +S + + + I  LE+ +G +L  R  R  +LTE G + +
Sbjct: 7   MEIFVAVVEAGSLTAAAERFDISSAMVGKHIRSLESRLGTRLLTRTTRRQSLTEIGRQYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++  +   +  +  P G L++   +  G  +    + ++L  +P++ ++L 
Sbjct: 67  EQCRRILADVKDAESLAEAMAAAPRGVLKVTVPLTYGVEVFSPAMTDYLSAWPEVTLELD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L N+  D+  +  D A+R+   +  SS + R L    M A A+P YL     P +  +L 
Sbjct: 127 LSNRVTDLVEEGFDAAVRIGH-LPDSSFVARPLKPYRMRACASPAYLARAGIPRTPADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + F     + +      +  + P    R    + N+  ++    + G G+ L P+ 
Sbjct: 186 HHECLGFLHWGREGIWRLGNESAAENPS---RAGRFRANNGQALKVAALRGFGLVLQPEA 242

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++     +  LV ++E+ +     V+  Y    + T KL +F +F+  +
Sbjct: 243 LLAREIASGELVSVLEEHLPEGAPVHLVYLRDRRATPKLTSFIDFVIER 291


>gi|229590461|ref|YP_002872580.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
 gi|229362327|emb|CAY49229.1| LysR family transcription regulatory protein [Pseudomonas
           fluorescens SBW25]
          Length = 300

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 139/300 (46%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   D L VF   A +GS + AA  L L+ ++ S  +  LET +GI+L  R  R + LT
Sbjct: 1   MSSTLD-LEVFVRTADTGSLSAAARGLGLTPAAASIALKRLETRLGIRLLARSTRSMRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +           L   +  +++     SG L++A   D G+N+L G L EF L +P
Sbjct: 60  EEGRRYLESVRVALEALSEGEQAIKQQGQSLSGLLQLAAPSDFGRNVLLGWLDEFKLEHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCRE 179
           +I++QL+L++ + D+  D  D A+R   P + SSL+   +V   H    A+P YL     
Sbjct: 120 NIRLQLLLNDSNADLFRDTVDIALRFGVP-RDSSLVALPVVPGHHRIPCASPDYLARHGT 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P +  +L +HN + +   + +   +  W    D  + E  ++     +    + ++ + G
Sbjct: 179 PRTPADLAQHNALRY---MRQGRANSTWYFRQDTALQEVEVTGDYLSDDGEIVRRWALAG 235

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIA   +  +  +     LV ++ D            P  L+ + ++K    F+  + +
Sbjct: 236 HGIAYKANLDIARDIQAGRLVPLLPDWQGEPTPFNLMCPHRLQVSERVKVLHRFLQGRCQ 295


>gi|222084952|ref|YP_002543481.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722400|gb|ACM25556.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 295

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 129/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L VF + A + SF  A E L +S S+I + ++ LE  +G++LF+R+ R + +T +G
Sbjct: 3   NIAALNVFMIAAETRSFVRAGEVLGVSASAIGKTMARLEKRLGVRLFHRNTRNIAITAEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    ++ ++E  + EL ++   P G LR++    L   L    + +F+ ++PD+ 
Sbjct: 63  IMFLERCRRIFSEIEAAEQELSQTIAAPRGWLRVSLP--LAGMLFMPTITKFMRVFPDVM 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L   ++ +D+  +  D  +R  + I  S L+ R L         +  Y      P   
Sbjct: 121 IDLDFTDRLVDVIEEGFDVVVRTGE-ITDSRLMVRTLGRFSHRIVGSKEYFDRFGIPKKP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  +         +E +           E  +S +  ++   ++     G G+A 
Sbjct: 180 EDLSAHLCLHHKYPSTGKLERWPLRYGAGAGKLELPVSSM-ASTLEPLINMAEAGLGVAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP + +     +  LV ++ D +  +      +P + + + K++AF  F+  
Sbjct: 239 LPLFTIGGQIADGTLVSVLADHVEDAGEFRVLWPSSRQLSPKIQAFVKFMAE 290


>gi|221200111|ref|ZP_03573154.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206736|ref|ZP_03579748.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221173391|gb|EEE05826.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180350|gb|EEE12754.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 325

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 123/300 (41%), Gaps = 6/300 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D    +R+F   A  GS + A  +L+L+ ++ S +++ LE ++  +LF R  R L LT
Sbjct: 15  RMDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLT 74

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G        +    L+     LQE      GK+R+++T D G+N L   L EF   +P
Sbjct: 75  DEGRLYLNCCRQALQALDDADAMLQEGRNVVGGKVRLSSTSDFGRNQLLDWLDEFTARHP 134

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+   L   +   ++  D  D AIR   P    +L+ R+L        AAP +++    P
Sbjct: 135 DVTFSLTASDSSSNLWQDEIDLAIRFAAP-PDGALVARRLAANRRVLCAAPSFVERYGTP 193

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +                        +    P  +  + N      ++ + G G
Sbjct: 194 AAPNDLARFPCNVITIASGPMNTWRFTRGDEVQTYTVPMSNAFETNDGGLTREWTLRGHG 253

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           IAL   + + D+     L  ++ +       ++  Y        +++   +F+  + AR+
Sbjct: 254 IALKSLWDIADDVRAGRLRVLLPEWRHQDAPLHAIYHSKRYMAPRVRVLLDFLAERFARE 313


>gi|262164436|ref|ZP_06032174.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|262026816|gb|EEY45483.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 312

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPAGALTVAAPEAFLNSVLQPFVMPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+   +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPIHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALAAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPTRLRVFIDFVLE 299


>gi|167577769|ref|ZP_02370643.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 300

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 136/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+
Sbjct: 1   MDRFQEMQVFVRIAERQSFSRASDDLQIPRATVTNLMKRMEARLGTRLLERTTRTVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   LE  +   +++   P G LR+     L +  +   L +FL  YP 
Sbjct: 61  DGHAYYRRCVRLIADLEEAEGAFRDA--APKGLLRVNLQGTLARYYVVPALPDFLARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IRLHIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            +  L  H  + +  +     +      TVD  + E R+ + + V          V G G
Sbjct: 178 DLAALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P Y + D   +  L  ++     P   V   YP++ + + +++ F  ++  +
Sbjct: 236 IVQVPRYRIADELAHGRLKIVLAAYPPPPMPVSVLYPQSRQLSSRVRVFARWLRER 291


>gi|330821451|ref|YP_004350313.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373446|gb|AEA64801.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 307

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 128/295 (43%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +   V  +GS + AA +L +  +++SR+I+ LE  +  +L +R  R L+LTE G 
Sbjct: 4   LESMSLLVAVVDAGSMSAAARRLDIPLATVSRKIAELEAYLNTRLLHRTTRQLSLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   +  T+         P G+L +   I  G+  +   +  FL  YP+I +
Sbjct: 64  SYVAGCRRILDDIAETERAATGEYAAPRGELIVTAPIVFGRLHIVPAVAAFLAHYPEIDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L ++   +  +  D A+R+ + +  SSL+  ++ ++     A+P YL     P    
Sbjct: 124 RLVLTDRVAHLMEEQIDVALRIGE-LPDSSLMAVRVGSVRRVICASPAYLAAHGAPAEPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I+F  L  +    F         +  P  S   VN+  + +   VLG G+  +
Sbjct: 183 DLANHPCISFEVLASRRAWVFE---AGKGELTVPVHSRFAVNTAEAAIDAAVLGVGLIRV 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             Y V+       L  +++        V   +        KL+AF +F+  + R+
Sbjct: 240 LSYQVETALREGALEVVLDGFEARPLPVSLVHKGQAPMPLKLRAFLDFVAPRLRE 294


>gi|300716897|ref|YP_003741700.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299062733|emb|CAX59853.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 294

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS ISR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAAQRLGLAQSGISRSVRELEERLGVQLLVRTTRRLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++     +  L +    L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYKTAETGFDALNSGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAIFQQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  IRL   +    +  R    + M   A P + +    P + 
Sbjct: 126 LELISESRFVDIIAERFDAGIRLGPEVGQGMIAVRITPDMEMAIVATPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I +  L    +  +       +    P+      +SY+   +    G G+A 
Sbjct: 186 EDLVAHPCIAY-QLADGSVYAWELNQQAKKITHRPQGQWAFSDSYMEA-EAARRGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P+ +V D+     LVR+++         +  YP     +  L+   + +
Sbjct: 244 VPEELVSDDLQRGRLVRVLQRFSQRLDGSFLYYPH-RNVSPALRIVIDAL 292


>gi|295700531|ref|YP_003608424.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439744|gb|ADG18913.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 305

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 7/294 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L     VA +G F  AA++L ++ SS++R +  LE  +G  L  R  R ++LT+ G+  
Sbjct: 6   ALNTLLEVADAGGFAKAAQRLGVATSSVTRLMDALEDSLGTALLTRTPRRVSLTDAGATY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               S +  +L      + +S   P G LR+       + +L  +L  FL  YP + + +
Sbjct: 66  VEQISRLLDELAEADESVLDSGAAPVGALRVTVPSTYNRIVLAPHLAAFLREYPRVALDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +  +D+++D  D A+R+  P    +LI RK+        AA  YLK    P    +L
Sbjct: 126 VVADHFVDLALDRIDVAVRIGLPSGDPNLIVRKMADNPRFVVAAHEYLKKAGMPEEPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  +                   +          L  NS   ++Q  +   G ALLPD
Sbjct: 186 AEHECLRIAYGGSYRARQIWTFTRGEEIEKVNVRGRLISNSLDMLLQAVLAEQGFALLPD 245

Query: 247 YIVK---DNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLK 293
           ++V    D+  L+R   D      +    V+  Y    +++ K++A   F+  +
Sbjct: 246 WLVNEHIDSGRLMRCFADWKVTPQSGDVVVHAAYLPNRRHSTKVRALLQFLEAR 299


>gi|66045633|ref|YP_235474.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256340|gb|AAY37436.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 304

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 131/297 (44%), Gaps = 11/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D L VF  VAR  SF  AA++L +S + +S++I  LE  +G+ L +R  R +++TE G
Sbjct: 6   SLDDLNVFVHVARRSSFVGAADELGMSAAYVSKRIRLLEQGMGVVLLHRSTRQVSITEDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++     +   ++    E+     +PSG LR+ ++   G+  +   L E    YP + 
Sbjct: 66  ERVYEWAKGMLDSVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAARYPKLD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L + ++ +D+  +  D  IR+   I +  L  R L        A+P YL     PL++
Sbjct: 126 IRLDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLADNWRVLCASPGYLDVHGTPLNL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+ +   +           L              L  N      Q+C+ G G+ L
Sbjct: 185 GELANHDCLVIKERDRPFGIWH--LNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVLL 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              + V+       LV+++ D    +  ++  +   L ++ K++    F+    RD+
Sbjct: 243 RSLWDVRTDLAEGRLVQVLPDYRQDA-DIWAVHTSPLMSSAKVRVTVEFL----RDY 294


>gi|84386507|ref|ZP_00989534.1| Putative transcriptional regulator, LysR family [Vibrio splendidus
           12B01]
 gi|84378612|gb|EAP95468.1| Putative transcriptional regulator, LysR family [Vibrio splendidus
           12B01]
          Length = 293

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 132/295 (44%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  +G F+ AAE L +  + +SR +S +E+++G+ +F R  R + LTE+G +
Sbjct: 6   DDLEMVLTVVDAGGFSAAAEALDVQVAKVSRSVSKVESQLGVSIFNRTTRRVELTEEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      +++ + E+      P G+LR+        + L   ++ F   YPDI+++
Sbjct: 66  FVDSVRVGLQMIQSAEEEIVSRGELPKGRLRVDAASPFVFHQLVPLVQSFKEAYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    +H  A+P YL     P   ++
Sbjct: 126 LTSNEGFVDLLEKRTDIAIRIGK-LSDSTLHARPLGKSLLHIVASPDYLAKRGLPTKPED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H ++ F                   P        +  ++  ++ Q  + G+GIA L 
Sbjct: 185 LSSHQIVGFAGNKVLNHWPL--------PNQSDVAPTVTASNGETVRQLVLAGNGIACLS 236

Query: 246 DYIVKDN---PNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++V+++     L+ I+E      T    V   Y ++   + ++ AF +FI  + 
Sbjct: 237 GFMVQEDMAAGRLIPILEQDKLANTDRERVNAVYYKSSSVSKRISAFIDFIQPRL 291


>gi|271501940|ref|YP_003334966.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270345495|gb|ACZ78260.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 294

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 133/292 (45%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F +VAR GSFT AA +L L+QS +SR I  LET +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMLVAREGSFTKAATRLGLTQSGVSRAIRELETRLGVQLLTRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+R T   +  L+     L      PSG +RI  +      +L   L  F L YPDI+
Sbjct: 66  EQLYRTTLTGFDSLDLGLATLAHFRDTPSGTVRINASQHAIDKVLLPKLATFRLHYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ ++I  +  D  IRL   +    +  +    + M   A P + ++   P + 
Sbjct: 126 LELISESRFVNIIDERFDAGIRLGPEVDEGMIAVQITPDMEMVVVATPDHFRHYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +        +   W     +P+          +          LG G+A 
Sbjct: 186 ADLVVHPCIAYQFADGSLYQWELW--QDGKPLRHKPQGQWVFSDSYMEAAAARLGLGLAY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +P+ +V    +   L+R+++        ++  YP     +  L+   + + L
Sbjct: 244 VPEELVTPDLEQGTLIRVLQRYSHRLAGLHLYYPH-RNVSPALRMVIDALKL 294


>gi|221068116|ref|ZP_03544221.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713139|gb|EED68507.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 312

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 123/288 (42%), Gaps = 6/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA+  S T+AA  + ++ +++S+ I  LET + ++LF R  R + LTE G    
Sbjct: 9   LAAFEQVAQHRSLTYAAHAIGVTPAALSQTIKKLETRLDVRLFDRTTRSVNLTEAGRIYL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S     L     +LQ  +    G LR+  +   G+ L++  L EF   +P I ++L+
Sbjct: 69  ERISPALANLREATEDLQLQAGVEGGTLRLTISHPAGKVLVEPMLAEFFAHHPHIHVELV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D+  +DI  +  D  IR  + ++   +       + M   A+P YL+    P    EL+
Sbjct: 129 YDDGFVDIVREGFDIGIRNGESLEGDMVAMPLTQDLTMSFGASPAYLQAHGVPQHPDELE 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            H  I +   +      + W   +D  + E  +S  L VN   + M+  + G G+     
Sbjct: 189 HHQCINY--RMSSSGAVYKWEFNIDGKLCERAVSGPLTVNHGDTAMRAALDGVGLITGWR 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             ++       LV +++         Y  YP       K + F +F+ 
Sbjct: 247 ESMRGAFHAGQLVEVLKPYWASFPGFYAYYPHRTHLPLKTRIFLDFLV 294


>gi|78067284|ref|YP_370053.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968029|gb|ABB09409.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 311

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT 
Sbjct: 1   MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETGLGTRLLHRTTRQVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  + +      +       G+L +     + + ++   L      YP 
Sbjct: 61  DGTLLLERGRRLLSEADELDRLFRGRDRDVIGRLTVDVPSRIARRMVAPALPSLFHRYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P 
Sbjct: 121 LQLSLGSTDRSIDLVQEGVDCAIRVGR-LAESSLVVRPLGQFTLINCASPDYLRECGVPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGS 239
               L   H  I +         D+ + A  +R  +G P  S + VN+  + +  C+ G 
Sbjct: 180 HPDALAHGHWAIGYVSPTTGRELDWEYCADGERHTLGLP--SRVIVNNAETYIASCIAGM 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +P + V+   D+  LV +M D       V   YP     + +L AF  +
Sbjct: 238 GLIQIPRFDVQHLLDSGALVDVMPDHRAAPMDVSAVYPHRRHRSRRLNAFIEW 290


>gi|289624357|ref|ZP_06457311.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649651|ref|ZP_06480994.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868659|gb|EGH03368.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 303

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 138/301 (45%), Gaps = 12/301 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M++ + D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++
Sbjct: 1   MNYPNLDDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMGVVLLHRSTRQVSI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +++     +   ++    E+     +PSG LR+ ++   G+  +   L E   LY
Sbjct: 61  TEDGERVYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I+L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YLK+   
Sbjct: 121 PKLDIRLDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGA 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PLSI EL  H+ +   +           L              L  N      Q+C+ G 
Sbjct: 180 PLSIGELANHDCLVIKERDRPFGIWH--LNGPQGAETVKVTGSLSSNHGEIARQWCLDGR 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L   + V+       L++++ D    +  ++  +   L ++ K++    F+    RD
Sbjct: 238 GVLLRSLWDVRTDLAEGRLIQVLPDYRQDA-DIWAVHTSPLMSSAKVRVTVEFL----RD 292

Query: 297 W 297
           +
Sbjct: 293 Y 293


>gi|206562602|ref|YP_002233365.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038642|emb|CAR54602.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 306

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 122/275 (44%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLEYARRILDQMDELGELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 87  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L        AAP YL     P +  +L +HN I    GD      
Sbjct: 147 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGTPGTPHDLTRHNCIGIRQGDEGYGVW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
              +                L  N     +++ + G GI +  ++ ++D   +  LV ++
Sbjct: 206 RLTSGRGAARHTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDLRDYLADGRLVVVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D  TPS  +Y  Y +  + + +++AF +F+  + 
Sbjct: 266 PDHETPSADIYAVYAQRHQMSARIRAFVDFLAEEL 300


>gi|115360737|ref|YP_777874.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286065|gb|ABI91540.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 313

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP 
Sbjct: 61  AGQRYLDRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P
Sbjct: 121 VAVELTLSQHVPDIIDEGYDVSLQLSSAELPDSGLVSQRLGDVHSVLCASPAYLKERGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+++L+ H+ +     I    + ++      R   E  +   QVN   ++      G G
Sbjct: 181 RSVRDLEAHSCLQIVTPI-FPRDRWHLDGPDGRETFELPLPDFQVNIADALGAALRAGLG 239

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP         +  LVR++ +      TVY  Y        K++ F +F+  
Sbjct: 240 IGSLPMSSAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 294


>gi|37222138|gb|AAP49331.1| Uvs050 [uncultured bacterium]
          Length = 307

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 131/299 (43%), Gaps = 4/299 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +  F   A + SF+ AA  L L+ +++S+ ++ LE ++G++LF R  R LTLTE G
Sbjct: 3   TLASIESFVRSAETSSFSAAARLLGLTPAAVSKNVATLEGKLGVRLFQRSTRRLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  S     ++        +  +PSG L+++     G+  +   L +F+  YPDIQ
Sbjct: 63  EAFLLEVSGGLDTVQAALANASRNRGQPSGTLKVSLAFAFGRQYILPLLADFMAKYPDIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                +N+ +D+  +  D AI     + S  ++ R+L   +M   A+P +L + + P  +
Sbjct: 123 PDWRFENRQVDLINEGIDVAIGGGIEL-SPGVVARELARPYMVLVASPGFLADQKMPKVL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ++   + I         ++ +      +        + + +N   +I    ++G G+AL
Sbjct: 182 ADITAWDAIVRRSSNTGRIQPWQLRNKNNEQEMVEPKARVILNDPEAICNAALMGVGVAL 241

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +P   V     + +L+R++    +    +   +  +     K +AF +F+        F
Sbjct: 242 VPMPHVLNYLQDGSLIRLLPKWYSDVGPLAIYFSSSKLLPAKTRAFVDFVVEHFHREDF 300


>gi|190572582|ref|YP_001970427.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190010504|emb|CAQ44113.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 299

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 130/294 (44%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L+ F   A + SF        +S S+  + ++ LE  +G++LF+R  R +TLT +G
Sbjct: 6   NLANLQTFVHAADTRSFVETGRLQGISASAAGKCVARLEQALGVRLFHRSTRSITLTAEG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +  + +  + EL +    P G LRI     L  +L    + EF+  YPDI+
Sbjct: 66  QLFLARCRRILDERDAARTELAQPHATPRGTLRIGLP--LVGDLTLPLMAEFMAAYPDIR 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ +D+  +  D  +R+ +P   S +  R+L        A+P YL+    P + 
Sbjct: 124 LDLDFSDRLVDVIEEGFDAVLRVGEP-SDSRMNARRLGVFPRRIVASPAYLQRRGTPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H L+ +       +E +  +   D    +     +  N+  + +   +   G+A 
Sbjct: 183 ADLLQHTLLHYRFPSTGKLELWP-IHWPDHETPQELPVHMVANTIEARVALALRDIGLAF 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +P + V+D   +  LV ++++ +      +  +P       KL+ F +F+  + 
Sbjct: 242 VPVHSVRDALADGRLVTVLDEHVHSCGIFHLLWPSGRHVLPKLRVFIDFVSARL 295


>gi|317053836|ref|YP_004117861.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316951831|gb|ADU71305.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 307

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 123/289 (42%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F VVA   SFT AA +L  SQ ++S+ +  LE  +G++L  R+ R + +TE G
Sbjct: 5   ELGDLAAFLVVAEEKSFTRAAARLSTSQPALSQTVRRLEERLGVRLLIRNTRNVAVTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          ++     L +   KP+G +RI         L+   ++E L  YPDI 
Sbjct: 65  EQLVNTLRPALSDIDHRLQALSQFRDKPAGTVRITAGQHAADTLIWPAIREVLHTYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L LD+   DI  +  D  IRL + ++   +  R    + M     P Y      P S 
Sbjct: 125 IELSLDSALTDIVSERFDAGIRLGERVELDMIAARIGPDLRMAVVGTPDYFAKHPIPKSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     + W  +        R+     VN+ ++ ++    G G+A
Sbjct: 185 HELPHHTCINI--RLPSSGGIYAWEFSQGERELNVRVDGQFIVNNIVAALKAAEAGVGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           ++ + +V+   +   LVR++ +   P    +  YP     +   +    
Sbjct: 243 MVMEDMVEAQLEEGKLVRVLAEWCAPFAGYHIYYPSRRLLSPAFQVLLQ 291


>gi|91778353|ref|YP_553561.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|296159932|ref|ZP_06842753.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|91691013|gb|ABE34211.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
 gi|295889915|gb|EFG69712.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 318

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  +  + SFT AAE L++ +++ +  +  LE  +G  L  R  R L++T +G+  
Sbjct: 7   AMRTFIRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTALLARTTRRLSVTPEGAAY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +++   ++  +  ++ ++   +G+LRI     +   ++   L +F   YP++ + +
Sbjct: 67  YERCAQILADIDEMEASIRHATDNLTGRLRIEMPGAVASTIVLPALDDFHTRYPNLDLAI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+ +D+  +  DC+I+L + +  S+L+ R+L T+     A+P YL     P  + +L
Sbjct: 127 GISNRTVDLISEAIDCSIQLGE-LPDSNLVARQLGTLEHVTCASPAYLARYGTPTDLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIALLP 245
             H  +    + P    + ++   VD      ++     V+   + +   + G G+ + P
Sbjct: 186 RGH--VAVNCMSPHNGREVDFDFEVDGDAQNVKVKGFVKVSDEQAYLTCGLQGLGL-IQP 242

Query: 246 DYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             I      D+  L  ++         V   Y +  + + +++AF +++  
Sbjct: 243 ARIAAQPYLDSGLLREVLPQWKPVPMPVSVAYVKNRRVSPRVRAFVDWLAE 293


>gi|295700209|ref|YP_003608102.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439422|gb|ADG18591.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 341

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 7/289 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   GSF  AA +L + +S++SR +  LE ++  +L  R  R + LT +G   ++  
Sbjct: 39  FLAVVSEGSFAKAASRLGIGRSAVSRNVQKLEAQIDARLLLRTTRSMALTREGELFYQNC 98

Query: 71  SEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +    ++     +++E     P G+LRI +T   G+ ++   L  F   YPDI +  +L 
Sbjct: 99  NPGVERIVRALADMRELRQGPPRGQLRICSTTGFGRRIVAPLLSGFYTAYPDIALDFMLK 158

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  I+ + D  D A R  K +  S +I ++L  + M   A+P Y +    P S+++L  H
Sbjct: 159 DGPIEFTTDRIDVAFRDGK-LDDSQVIAKQLFPMQMIVCASPEYARAHGLPRSVEDLGMH 217

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I    +  +  E    +    R +    +  L  N    ++Q  + G GIA L  Y V
Sbjct: 218 RCINLRLVSGRIAEWEFKVGGASRKVVPKAVHVL--NDADLVLQAVLAGHGIAQLAAYQV 275

Query: 250 KDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +     R+   +          Y CY        +++ F +++  + R
Sbjct: 276 SELLRANRLYACLVQYAPDDRGHYACYLSRKHLPSRIRVFIDYMTEQIR 324


>gi|206563530|ref|YP_002234293.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039570|emb|CAR55538.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 304

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 5/291 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G +  
Sbjct: 10  LHVFMTVATAGNFTRAAAALGLTPAAVSLSIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R T   Y ++   +  L+++  +PSG LR+         ++   L  F   YP +++++ 
Sbjct: 70  RQTEPAYRQVMQARDALKDARSEPSGLLRVTALPLARLLVIAPVLAPFRERYPKVRLEIR 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +N+ +DI+ +  D  IRL   +Q   +  R    +     A+P YL     P SI +L+
Sbjct: 130 YENELVDIAKEGFDAGIRLADRLQPGMIGVRIAPALTCALVASPGYLARHGAPASIAQLE 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI--ALLP 245
           +H  I F       +  +  L    R +          N   +++     G GI  A + 
Sbjct: 190 RHACIRFRFTESGRLHKW-LLHDGRRDVDLDPDGVFVTNDADAVIDAARAGVGIAFAFMR 248

Query: 246 DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + I +D  +  LV ++         ++  Y        KL+AF + +  +A
Sbjct: 249 ERIEQDLRDGTLVEVLPGTCRTLPPMWLYYVNRKHVPAKLRAFIDVLRERA 299


>gi|78047252|ref|YP_363427.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035682|emb|CAJ23373.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 338

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKH-NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H  + T  D   +  E       + R   +PR++      +  +      G GI
Sbjct: 188 PSELANHTTMSTSEDEAHQRWELHGPNGEMRRVDLQPRLAGF---DFPLLQSMARDGFGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP+ +  +   +  L  ++     P    +  +         ++ F +F+  
Sbjct: 245 TMLPETVCAEAVRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 298


>gi|327190353|gb|EGE57451.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 309

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  VA   SFT AA +L ++QS++S  +  LE  +G++L  R  R +  TE G
Sbjct: 16  NFNELLLFLAVAEERSFTRAAAKLGVAQSTLSYAVKELEARMGLRLLTRTTRSVATTEAG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    ++E     L     KP+G +RI  +    ++++   L   L  YPDI+
Sbjct: 76  ERLRQSLAPRISEIEADIEALMAYRDKPAGTVRITLSNHAMESVVWPKLAPILGEYPDIK 135

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +DN   +I  D  D  +RL + ++   +  R      +   A+P Y K    P + 
Sbjct: 136 LELSVDNSFRNIVEDGFDAGVRLGESLEKDMVAVRIGPDWRLVVVASPDYFKTRPVPTTP 195

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL +HN I     + +    + W    +      R+   L  N+   ++   + G GIA
Sbjct: 196 QELMQHNCI--NRRLDRIGGLYAWEFEKNNEEVRVRVEGQLTFNTDREMVGAALQGYGIA 253

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+  V  +     L  +++D        Y  YP   +N          +  +
Sbjct: 254 FVPESYVATHLVERRLTLVLDDWTPKFAGYYLYYPSRRQNLPAFSVIMEALRER 307


>gi|254503524|ref|ZP_05115675.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222439595|gb|EEE46274.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 305

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 132/295 (44%), Gaps = 4/295 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R F  V   G+ + AA  L +S +  S +IS LE  + ++LF R  R L+ TEQG+
Sbjct: 4   LENIRTFLRVYELGNMSAAARDLRISSAVASSRISQLEEHLNVRLFQRTTRALSPTEQGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  +++   +E  + E+   +  P G L +A  I +GQ+L+   +  F   +P I I
Sbjct: 64  IFYRGATKIMEAVEEAEAEITNMTRSPRGTLFVAAPISMGQSLIAPAIPTFKADHPLIDI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +D++ +  D A  L  P + S+L  RK+        A+P Y+    +P S  
Sbjct: 124 RLRLSDRKVDLTGEGLDAAFFLGVP-EDSNLKIRKIADCQRILCASPDYIAKTGQPASSA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L            P   E    L T +     P     + +    +  + + G GI L 
Sbjct: 183 DLSTGKFDCLNMRYPGAPEFQWPLETPEGVKRIPVKGPFESDHGDVLTAWALEGHGIVLK 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P + V ++     LV+++E        +   Y    +   K++ F +F+    +D
Sbjct: 243 PVFEVAEHLKSGRLVQVLESAPPIPVQMACLYTHRRRQDPKVRLFIDFMVSHIQD 297


>gi|194444641|ref|YP_002040929.1| regulatory protein LysR [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194403304|gb|ACF63526.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 301

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++  +    +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNH-SYDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|209519074|ref|ZP_03267881.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209500516|gb|EEA00565.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 307

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 136/307 (44%), Gaps = 13/307 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALTRLEQKLDTALVRRTTRRLHLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    R    +   LE  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGDAFLRRARAILDALEEAEESVARGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  + + +D+     D AIR+   +Q S+L  R L    +   A+P YL    EP
Sbjct: 121 EIRLELTSNERIVDLLEQKVDIAIRIGA-LQDSTLHARALGESRLRVLASPAYLAGHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--------SCLQVNSYLSIM 232
            ++  L  H LI F                  +     R           +  +S  ++ 
Sbjct: 180 TTLDALRAHRLIGFTAPEHLNRWPLRDGGRATKRATGQRDDAALLKIEPSITASSGETLR 239

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRN 288
           Q  + G GIA L D++   +     LV I+ +++      V+  Y ++    G+++ F +
Sbjct: 240 QLALSGWGIACLADFMTAADVREKRLVPILGNLLVDERQPVHAVYYQSASLAGRVQCFLD 299

Query: 289 FIFLKAR 295
           FI  + R
Sbjct: 300 FIAARVR 306


>gi|194292454|ref|YP_002008361.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193226358|emb|CAQ72307.1| putative transcriptional regulator, LysR [Cupriavidus taiwanensis
           LMG 19424]
          Length = 312

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 134/287 (46%), Gaps = 8/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +  F  V  +GS + AA +L+LS+S +S ++  LE  +G  L  R  R L LT++G+
Sbjct: 4   LEGIASFVTVVEAGSISEAARRLNLSKSVVSDRLVELERGLGATLLRRTTRKLLLTDEGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 + +  ++E    ++ E   + +G LRI+  +  G+  L   L  FL  +P++++
Sbjct: 64  AFLDRATRIMREVEEASTDVAERRGRLAGPLRISAPVTFGRMHLGPALYPFLAKHPELEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L LD++ +D + D  D  +R   P++ S L+  +L        A+P YL +   P S +
Sbjct: 124 TLDLDDRRVDAAADGYDAVVRHG-PLEDSRLVAWQLAPSRRLLVASPAYLDHRGTPASPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I +   + +   D+         I    I  L+VN+   +      G GIALL
Sbjct: 183 QLRHHRGIFY---LNRGAADWRLQGKDGTEIVRAPI-ALRVNNGDMMRDAAEAGLGIALL 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P +I   +     L  +   +     ++Y  +P+  +   +L+AF  
Sbjct: 239 PTFIAGPSIRRGTLAVVDIGLQAIPESIYIAHPDGRRAPARLRAFAE 285


>gi|160876657|ref|YP_001555973.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160862179|gb|ABX50713.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315268857|gb|ADT95710.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 299

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 135/298 (45%), Gaps = 11/298 (3%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M  +   D +R+F+VVA+ GSF  AA+ L +  S++SR+I+ LE  +G++L +R A  + 
Sbjct: 1   MKLNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVN 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT  G +       ++ +L     EL     +  GKLRI+  I+     L  +L  F   
Sbjct: 61  LTATGQRYLERCGPLFIELNHVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRH 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP+I I L L N +ID+S +  D A R+ +P +    I R L TI     A+        
Sbjct: 121 YPNIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISFVLCASTS-ATQWH 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
              +I+ L++H +I      P          T      EPR +  L V+      Q  V 
Sbjct: 179 TLQAIEALEQHPVII---AKPVKTWRLQHNITGQDFEFEPRGNIKLAVDDMAIASQAVVA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI LLP  +  +   +  LV+I+ +      T Y  Y +      +++   +F+  
Sbjct: 236 GLGIGLLPISMASEQIQSGKLVQILPEWQGIPRTAYLMYRDRDNLPLRVRLLIDFMLA 293


>gi|78062112|ref|YP_372020.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969997|gb|ABB11376.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 300

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 129/300 (43%), Gaps = 7/300 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ +R+F  V   G+FT AA  L +  S +SR++  LE ++G++L YR  R +++TE 
Sbjct: 1   MDFESIRIFLRVVERGNFTAAATHLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     + +     P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYERCLRAEDILLDADRQARALRTAPEGMLRVLVPYSIGLFELEPALAEFRRRYPLV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  SS I R L        A+P YL     P +
Sbjct: 121 QLVLIYDNNPLDLVEHGFDVALRAG-VLTDSSYIARSLGWSQAKLAASPAYLDRVGRPTT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L +H+L+  G   P                  P    L  N  +++++    G GIA
Sbjct: 180 PQDLAQHDLLLVGRDAPGLT--LRLTNAAGEVADVPVRPVLITNESVTVLRQAASGGGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           L+  +      +   L  ++ D   T    ++  YP       K++AF  F+     DW+
Sbjct: 238 LVSTHYTARRLERNELEIVLPDWHRTDDVELHVLYPRRATLDSKVRAFVEFLAEVFDDWR 297


>gi|269102520|ref|ZP_06155217.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162418|gb|EEZ40914.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 310

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 132/291 (45%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L VF +V   GS+T AA++L ++ S++S+Q+S LE  + +KL  R  R L ++E G ++
Sbjct: 19  DLAVFIIVVDEGSYTAAAKKLGVTPSALSKQVSKLEKALSVKLLERTTRKLVMSESGKRI 78

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   + +    +            P+G + +A        +LQ  +  FL LYPDIQ+++
Sbjct: 79  YEQCTAMMSAAKQAVEISSSEHTIPAGTVTVAAPKAFMSIMLQPLVTPFLNLYPDIQLKI 138

Query: 127 ILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              + DID+  +  D   RL + PI+   L  +++  +++   A+P Y+     P    E
Sbjct: 139 KARDGDIDLLAEEIDIVFRLTEKPIEGQVL--KQVGKVNLVLCASPDYIARKGLPQHPLE 196

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ I  G+     + +F+                  VN     ++    G GI + P
Sbjct: 197 LKHHDCIYLGETNTDHIWEFH---QGTERHSIAVTGRYAVNHSQMRLKGVQDGLGIGIFP 253

Query: 246 DYIVKD---NPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290
           D+++K+     +++ ++ +          +   Y +      +++ F +++
Sbjct: 254 DFVIKEALAEGSVIDVLPEWTIRGNYQGVIALQYAQTKYMPARVRVFIDYV 304


>gi|161522360|ref|YP_001585289.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189347995|ref|YP_001941191.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345913|gb|ABX18997.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189338133|dbj|BAG47201.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 317

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 130/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP 
Sbjct: 61  AGQRYLDRCQRILAYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P
Sbjct: 121 VAVELTLSQHVPDIIDEGYDVSLQLSTAELPDSGLVSQRLGEMHSVLCASPAYLKERGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L+ H  +     I    + ++      R   E  +   QVN   ++      G G
Sbjct: 181 RTVSDLEGHACLQIVTPI-FPRDRWHLDGPNGRETFELPLPDFQVNIADALGAGLRAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP         +  LVR++ +      TVY  Y        K++ F +F+  
Sbjct: 240 IGALPMSTALPAFASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 294


>gi|254253025|ref|ZP_04946343.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124895634|gb|EAY69514.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 323

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  VAR  SF  AA +L ++ S++S+ +  LE+ +G  LF R  R + LTE G 
Sbjct: 12  LDGVEAFLSVARHRSFRRAAAELGVTPSAVSQVVRALESRIGTALFIRTTRSVGLTEAGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        + +L       +E   +P+G LR++    +   LL+  +  F   YP+I++
Sbjct: 72  RFLSRAKPAFEELVAASDAARELGRRPAGLLRLSVPRAVVPILLEPLIASFCNAYPEIEV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++    K +D++ +  D  +RL + + +  +              +P Y  +   P  I 
Sbjct: 132 EIDASEKLVDLAAEGFDAGMRLGQFVAADMVAVPLTPPFRFVVVGSPAYFADHDRPERID 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  + +                  R I       L    + +++   + G G+A L
Sbjct: 192 DLRGHACVRWRRSNGALAPWS--FDDGGRTIEAAVSGPLVARDFPTVLGAALEGVGLAQL 249

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+ +V +      LV+++E        V+  YP   +   KL+AF + +
Sbjct: 250 PEPMVAEGLKAGKLVQVLEPFAPMMPGVFLYYPSRRQIAPKLRAFIDHV 298


>gi|329847285|ref|ZP_08262313.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Asticcacaulis biprosthecum C19]
 gi|328842348|gb|EGF91917.1| uncharacterized HTH-type transcriptional regulator yhjC
           [Asticcacaulis biprosthecum C19]
          Length = 301

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 128/296 (43%), Gaps = 5/296 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +   VF  VA   SFT AA  L + +S++S  I+ LE+ +  +L YR  R + LT  G 
Sbjct: 4   LETYAVFVRVAELSSFTQAAVSLGVPKSAVSSAIAALESRLKTQLLYRTTRKVQLTHDGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+    ++    E  +   Q S    +G LR+   + + +N +   L EFL  +  +Q+
Sbjct: 64  LLYERARDLLSDAEDIEAMFQSSPAALTGTLRVDMPVAMARNFIVPRLPEFLGRHAGLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +D+  +  DC IR+      S L+ R+L  + M   A+P YL+    P ++ 
Sbjct: 124 ELSCTDRRVDVVAEGFDCVIRVGAQ-PDSGLMARQLGEMVMANVASPAYLERHGTPQTLD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+H ++ +   +      F +    D          + VNS  S     + G GI   
Sbjct: 183 DLDRHFMVHYVSQLGARPWGFEYRDG-DSYRTRDVPGRMFVNSTESFQSAALAGFGIIQA 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P   +        LV I+         V   YP       +++AF +++     D+
Sbjct: 242 PVAGLAPVLGEGRLVEILPQYEAEPLPVALVYPRRRHQARRVRAFMDWVAAIMGDY 297


>gi|332160197|ref|YP_004296774.1| LysR family regulatory protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664427|gb|ADZ41071.1| LysR family regulatory protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860115|emb|CBX70439.1| hypothetical protein YEW_BJ06860 [Yersinia enterocolitica W22703]
          Length = 308

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 124/294 (42%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T 
Sbjct: 1   MDQIQAMQIFVRIVELGSFSRAAEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++    E          ++P GK+RI     L +N++   L +F   YP 
Sbjct: 61  EGTLYYHRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALSDFYQRYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L  ++  ID+  +  DC +R   P     L  R +        A+P YL+    P+
Sbjct: 121 ITLILGANDSTIDLLREGVDCVLRAWLP-HDEQLAARNIGQQPQITCASPAYLEKYGIPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H  + +   +        ++    +       S L V+   + +   + G G+
Sbjct: 180 SLDDLAGHQAVGYFSQLNHRDYPLEFICQ-GKIENRVLPSILSVSGADAYIAAGMAGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P   ++       L+ ++  +  P   ++  YP       +++   +++  
Sbjct: 239 IQAPTAGIQGQLAQSELIEVLSHIPPPVMPLFIMYPPGRFLAPRVRVLIDWLIE 292


>gi|296103867|ref|YP_003614013.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058326|gb|ADF63064.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 309

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 130/298 (43%), Gaps = 11/298 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  S SF  AA +L  S+S +S+++  LE  +G  L  R    L+LTE G   
Sbjct: 6   EMSTFVSVVESQSFVGAAAKLGTSKSVVSQRVKMLEKRLGASLLER-GPRLSLTEAGLLF 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  ++   +  +  S  +  G+LRIAT+       L   L  F+  +P + + +
Sbjct: 65  YQECVRILDEVTQAEEAVAPSRSELHGELRIATSHTFMTTHLSTILAGFIGAHPGLSLDI 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ I++     D AIRL   +  S+LI R L        A+P YL     P+   EL
Sbjct: 125 STEDRQINMHQPDFDIAIRLGL-VPDSTLIARTLARNLTWLCASPDYLAQRGTPVHPVEL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++H+ + +    P     +  L    R     R + L+ ++  S+++    G GI ++P 
Sbjct: 184 EQHDGLLYTHRAPGGC--WQLLHNGQRQNWRVR-NRLRSDNAFSLLEAAKAGLGIVVMPL 240

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA---RDWK 298
           ++  D      L  I+         +   Y +  + +  ++A  N +  +     +W+
Sbjct: 241 FLGADAILRGELNIILPGWQPDGGNIVALYRQTRRASPVIQALVNLVAEQLGPEPEWE 298


>gi|261378797|ref|ZP_05983370.1| transcriptional regulator, LysR family [Neisseria cinerea ATCC
           14685]
 gi|269144776|gb|EEZ71194.1| transcriptional regulator, LysR family [Neisseria cinerea ATCC
           14685]
          Length = 296

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 131/294 (44%), Gaps = 4/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L  F  +A++ SF  A + L +S S++S  +  LET + ++LF R  R ++LTE G
Sbjct: 3   NFNELNYFLTLAQTQSFVKAGQLLGISSSALSHSMKNLETRLNLRLFNRTTRNVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S +Y  +      L +    PSG +RI       + +L   LK  L  YP I+
Sbjct: 63  QQLFDQLSPLYQAINQEVDALNDFLNTPSGLIRINAPAMAAEAVLYPKLKPILNQYPKIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++D++  DI  +  D  +RL   +    +       + M   A+P YL     P +I
Sbjct: 123 LEIVVDDRWADIVKEGFDIGVRLGNKVAKEMIAVPISAPLKMVLVASPDYLAQHGSPKNI 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H LI          E           I     S   +N++L  +Q    G GIA 
Sbjct: 183 DDLQQHRLIGIKLSAEHGTEMQWEFKYKKELITFTPKSHFSINNHL-RLQAVSDGLGIAW 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +    V D   + +LV ++ +       +Y  YP    ++   K   + + +KA
Sbjct: 242 VAHMSVADELNSGHLVELLPEYAMTYEPLYLYYPSRRGHSNVFKLIVDALKVKA 295


>gi|167033439|ref|YP_001668670.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859927|gb|ABY98334.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 310

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 123/297 (41%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++
Sbjct: 1   MDM-LHAMRTFARVVECGSFAAAANALDISAAQVSRIVAELENQLQTRLLHRTTRRLRMS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++    E    E + + + P G LR+     LG  LL   +  +  L P
Sbjct: 60  EAGERFLERARQIMLLTEEAVGEARGAHLTPRGHLRLHCPHGLGL-LLMPLVAGYNALCP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L L  ++ D   +  D  I +   +  S LI   L  I     AAP YL     P
Sbjct: 119 EVVIELTLSQRNPDPLAEGHDVVITVDGALPDSQLIAVPLGNIFSIPCAAPSYLNRHGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  +      P    D+ +   VD+ +  P  +    N   +++    LG G
Sbjct: 179 ERPEDLHAHRCLRMA--YPMYEGDWVFPQGVDQCVITPSDN-FSTNVADAMLVASELGMG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I LLP Y      +   L R++         +Y  YP       K++ + +++  + 
Sbjct: 236 IGLLPFYTASQAIEQGRLCRLLAPYRLRESALYAMYPSRHYLDAKVRTWIDYLKEQL 292


>gi|91788240|ref|YP_549192.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91697465|gb|ABE44294.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 301

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 129/296 (43%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  VA  G F  A   L L +S +SR+++ LE  +G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVAERGGFAAAGRSLGLPKSRLSRRVAELEARLGVRLLQRTTRKLSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R  S +  +       + +  V+P G LRI   + L Q+ L   +  F+ L+P ++
Sbjct: 63  EIYLRHCSAMRDEALAAAEAVAQVQVEPRGTLRITCPVTLAQSTLGYLVPRFMALHPQVK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + + + N+ +D+  +  D A+R+R  ++ S SL+ + L +      A+P  L     P  
Sbjct: 123 VDMRVTNRVVDLVEEGIDIALRVRPTLEDSGSLVVKNLGSSGGELLASPTLLARQGRPEK 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L K + +    +  +    +  L    +            +   ++    + G+GI+
Sbjct: 183 PEDLMKLDTVAMSWVDGRS--SWTLLGPEGQEFVLQHQPRYVADDLQTLKLAVLAGTGIS 240

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP+ +         LV ++          +  +P        +++F +++  + R
Sbjct: 241 FLPNSLSAAEQQAQLLVPVLPGWAPKPGVAHAVFPSRRGQVPAVRSFLDYLGERMR 296


>gi|322832106|ref|YP_004212133.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167307|gb|ADW73006.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 304

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 127/292 (43%), Gaps = 9/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  V    SF  AA +L  S + +S++I  LE  +  +L +R  +G+ LTE G +
Sbjct: 12  EDLQVFLAVVNKQSFAAAAIELGQSPAYVSKRIQILEESLNCRLLHRSTKGVRLTEDGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R   ++    +    +L +S  +  G + I ++   G+  +   + E    YP + ++
Sbjct: 72  TQRWALQILDTFDQFIGDLSDSRSEARGNVHICSSFGFGRCHVAPAIAELAARYPQLNLR 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D  I +   +     I +KL        A+  YL     P S Q 
Sbjct: 132 LDLFDRVVDLVAEGIDLEILVGDDVP-EQYIGKKLAQHQRILCASKEYLAAHGTPDSPQA 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  +   +   +      W  T +      R+   L  NS   ++Q+ +   GI L 
Sbjct: 191 LAQHQCLVIKE---RDNPFGIWSLTGEGKEHRVRVKGALSSNSGEVVLQWALKHHGIILR 247

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + V+       LVR++     P+ +V+  YP  L ++ KL+    F+  +
Sbjct: 248 SQWDVQPYLSRGELVRVLPQYSQPA-SVWAVYPTRLADSAKLRVCVEFLQQR 298


>gi|209694804|ref|YP_002262732.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
 gi|208008755|emb|CAQ78949.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
          Length = 335

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 135/301 (44%), Gaps = 9/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  +    S + AA+ L +S++ +SR ++ LE+ + ++L +R  R L+LT 
Sbjct: 39  MDRLTALHVFVTIVEQKSLSAAADHLDMSRAKVSRYLAELESWMDVRLLHRTTRSLSLTT 98

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +     T      +++VK  G+LRI  +  L  + L   + EF+ ++P+
Sbjct: 99  PGEETLDAARNLLALAGTLDGIRNQNTVKLKGQLRITASYSLIDSCLIDVIDEFVTMWPE 158

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             I ++  ++ ++I     D AIR+   ++  +++ ++L        A+P YL     P 
Sbjct: 159 TSIDILSTDESVNIIESRIDLAIRITNDVE-PNIVAKRLGECRSIICASPSYLAKNGTPQ 217

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++Q L +HN +++                 + P   P    +  N    ++   + G+GI
Sbjct: 218 NVQALSQHNCLSYTYFGRSAW----VFDGPNGPESVPITGNISANLSEVLLAATLRGNGI 273

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +  P   V+   +  +LV ++ +       VY  Y    + T   +AF +F+  + +  +
Sbjct: 274 SQQPLPTVQPLINRGDLVALLPEWQPKILNVYAIYATRKQVTPLQRAFIDFLTKRMKTSR 333

Query: 299 F 299
           +
Sbjct: 334 Y 334


>gi|182678742|ref|YP_001832888.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634625|gb|ACB95399.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 297

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 116/287 (40%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VA   SFT AA +L  SQS++S  I  LE  +G++L  R  R +  TE G +L
Sbjct: 8   DLNAFMTVAEEQSFTRAAAKLGTSQSALSHTIRRLEMRLGVRLLTRTTRSVAPTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     +      L E   KP+G +RI T+       L   L++ L  YPDI ++L
Sbjct: 68  LGTLRPALDSIGAQLTSLGELREKPAGTIRITTSEHAADTTLWPALEKLLPAYPDIHVEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD+   DI  +  D  +RL + +    +  R    + M    +P Y +    P + Q L
Sbjct: 128 SLDSGFADIVTERFDAGVRLGEALAKDMIATRIGPDLRMAVVGSPAYFQTRPIPQTPQSL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I    L    +  +  L    R +       L  N+   I++    G G+  + +
Sbjct: 188 ADHQCINLRMLSSGGLYAWE-LEKDGRELRVRVEGQLAFNNVNMIVRAATAGFGLGFVME 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V     +  L+R++ED   P    +  YP   + +         +
Sbjct: 247 DQVTAHLADGRLIRVLEDWCPPFPGYHLYYPSRRQPSAAFAVLVEAL 293


>gi|209884939|ref|YP_002288796.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
 gi|209873135|gb|ACI92931.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
          Length = 307

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 121/294 (41%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L L +S +SR+I  LE  +G++L  R +R  ++TE G
Sbjct: 3   DLNDLYYFVQVVDHGGFAPAGRALGLQKSRLSRRILLLEERLGVRLLNRSSRRFSVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +  + E  +  + E   +P G +R++  + L        +  F+  +P ++
Sbjct: 63  REFYNRCVAILVEAEAAEQVVAEVRAEPRGVIRVSCPVALLSFQFGDLIARFMAKHPAVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P+  + L+ RKL        A+P  +       S
Sbjct: 123 VHLESTNRHVDVIAEGFDIAIRVRFPPLNPTDLVMRKLDESTQCLVASPGLISA--SLQS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G         +   A   +    P    L  +    + Q  + G GI 
Sbjct: 181 PADLHGLPSLDLGPAYEG--HHWQLEAADGQTASVPHRPRLVTDDMAVLRQAAIEGVGIV 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  ++  +     LV ++      +  ++  +P        ++AF +F+  +
Sbjct: 239 QLPTMMIWQDIEAGRLVPVLPQWRPRAGIIHAVFPSRRGLLPSVRAFLDFLASE 292


>gi|116695918|ref|YP_841494.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530417|emb|CAJ96764.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 339

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSF+ A E+L + +S++SR +  LET++  +LF R  R   LT +G +    
Sbjct: 30  AFMAVATEGSFSKAGERLGIGRSAVSRNVLKLETQLSTRLFLRTTRTTQLTREGERFFEN 89

Query: 70  TSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +    +     ++ E     PSG LRI+ T   G+ ++   L +F   YPDI + L+L
Sbjct: 90  CHQGVAHIVEAMNDMLELRLGPPSGLLRISATAGFGRKVVAPLLSKFSAAYPDISLDLVL 149

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++  D +    D A R  + I+ SS++ ++L+ + M   A+P Y      P +++++ +
Sbjct: 150 DDRPTDFAAGNIDVAFRNGR-IEDSSIVAKQLIPMQMAVCASPAYAARHGLPSTLEDIAR 208

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I       + +E   W   V+  + +    + L  N    ++   + G GIA +  Y
Sbjct: 209 HECINTRIAGARILE---WEFKVEGHVRKVVPAARLTFNDPELVLAAVLDGLGIAQMAGY 265

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              D      LV  M          Y CY        +++ F +F+  + R
Sbjct: 266 QACDRIARGELVIAMGRYAPDDRGHYICYLSRQHLPSRIRVFVDFMTEEIR 316


>gi|262280434|ref|ZP_06058218.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258212|gb|EEY76946.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 306

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 133/299 (44%), Gaps = 6/299 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  +   G F+ A+ +L +++S +SR+++ LE  +G+KL  R  R +++TE G
Sbjct: 3   DLNDLFFFVKIIDCGGFSAASHELMVTKSLLSRRMAELENRLGVKLLNRTTRQVSITEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +  + E  +  ++  + +P G ++++   +L    +   L EFL LYP I+
Sbjct: 63  KIYYQHCKAMLIEAEAAEEAIEYLTSEPRGLIKLSCPTNLLHINVSEMLNEFLALYPKIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D AIR+R  P+  S  I R+L        A+P+          
Sbjct: 123 LHVEATNRRVDLIDERFDLAIRIRPLPLPDSDSIVRELALARQFVVASPNLTSRYFSISR 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L    ++      P+    ++  +   +                ++    + G G+A
Sbjct: 183 PEQLADWPILMMESFAPEYA--WHLYSQDQQEAIVKCYPRFTTTDLTALRNATLQGLGVA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            LP+ +V ++     LV ++ +   P   ++  Y         +K   +F+  K ++ K
Sbjct: 241 KLPELVVYEDLAKGTLVNVLPEWQFPPEMIHLVYTSRRGLLPSVKLLIDFLVEKFKELK 299


>gi|167644959|ref|YP_001682622.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347389|gb|ABZ70124.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 292

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +    SF+ AA  L+L  S+ +  +  LE  +G++L  R  R ++ T  G   +
Sbjct: 1   MRLFVRIVERRSFSRAALDLNLPASTATEGVKQLEARLGVRLLQRTTRHVSPTLDGEAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +  +LE  + E  ++  KP G LR+     L ++ L   L  FL  YPDI++ L 
Sbjct: 61  RRCLTILGELEDAEAEFSDA--KPRGLLRVDVHGALARHFLLPGLPAFLERYPDIRLHLG 118

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  DC +R+   ++ S++I R++  +     AAP YLK    P +   L 
Sbjct: 119 EGDRLVDLVREGVDCVLRVGD-LKDSAMIARRVGMLDEVTCAAPSYLKRRGVPATPDTLA 177

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
               +  G +     E F    T+D  +    + + L V    + +    LG GI  +P 
Sbjct: 178 ADGHVMIGFVSSATGEPFPLEFTIDGTLRRVTLPTVLTVVGAETNIAAACLGLGIIQVPR 237

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           Y  +   D   LV I+ D       V   YP+A     +L+ F  ++  + R
Sbjct: 238 YHAQAALDAGRLVEILPDHPPSPTPVSLLYPQARHIPPRLRVFMEWLTGEFR 289


>gi|327189708|gb|EGE56855.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 295

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 123/293 (41%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  VAR  SF  A E+  ++ S++S  +  LE  +G++L  R  R ++LTE G
Sbjct: 5   ELSELAAFAAVARHKSFRKAGEERGVTASAVSHAVLNLEDRIGVRLLNRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       + ++      L      P GK+RI     +G  ++   +   L   P++Q
Sbjct: 65  ELLVSHLDPAFGEMTAALDALNRYRDTPFGKVRINVPNSIGPFVIGRVIAPLLQRNPNLQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +DI  +  D  IR  + +    +  R    I +    +P Y +   +P + 
Sbjct: 125 LEINATDRLVDIVEEGFDAGIRFGERVTEGMIALRIKPRIRLVVVGSPAYFETRPKPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H  I   ++ P             + +       L ++ +  + Q  + G G+A 
Sbjct: 185 HELKRHLCI--QNMFPSGARYAWEFEKDGQTVSFQPTGPLSLDDHELMTQAALGGVGLAY 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +  V+       L+++++D   P   +Y  YP     +   +A  + I  +
Sbjct: 243 IWEPRVEKAIAGGELIQVLDDWCQPEEPLYLYYPSRRHMSAGFRAVIDAIRAE 295


>gi|146342431|ref|YP_001207479.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146195237|emb|CAL79262.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 307

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +      +R F  VA  GS +  A +L + QS+ISR +  LE  +G+ L  R  R +TLT
Sbjct: 4   LDISLVNMRSFVRVAERGSLSAVARELGVGQSTISRHLQELEEAIGVPLLSRTTRRVTLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++GS+ +    ++   +E    E + +    SG +RI+ T   G   +   +  F   YP
Sbjct: 64  DEGSRYYANCVQILRLVEQAGDEARGARGAASGTIRISCTAAFGILHITRLVFAFQDRYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI I L L ++ ID+  +  D A+RL  P+  SSL  R L   H    A+P YL     P
Sbjct: 124 DIAIDLNLTDERIDLVREGVDIALRLA-PLTDSSLKLRSLGYSHRLLVASPDYLAKRGTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + QEL  H+ I   ++    +     +         P   C + N  L + +  + G G
Sbjct: 183 RTPQELIGHDGIRMTNVAGSDV--LVVIGPGGERHEVPFRGCFRTNHGLGVREAVLAGRG 240

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I     ++V D      L  I+ D   PS  +            +++   +++  +
Sbjct: 241 IGGSHAWLVHDLIAAGRLTVILPDHRLPSTPLNMLIVPERAGIARVRLLIDYLAEE 296


>gi|15966591|ref|NP_386944.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307319657|ref|ZP_07599083.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15075863|emb|CAC47417.1| Transcription regulator LysR family [Sinorhizobium meliloti 1021]
 gi|306894779|gb|EFN25539.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 318

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 137/294 (46%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F      G F+ AA    ++ S++S+ +  LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEIFAKAVELGGFSAAARHYRMTPSAVSKLVLRLEERLGVRLVNRSTRKLQLTPEGHAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  T  +   ++  +     +   P G++R+      G ++L   + EF   +P + + +
Sbjct: 71  YERTVRILADIDEAERS-ASAGESPVGRVRLNVNASFGTHVLMPLVPEFRAHFPAVSLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +  +D+    AD AIR   P++SS+LI RKL    M   AAP Y++    P S++EL
Sbjct: 130 VMTDAVVDLMEARADVAIRAG-PLKSSTLIARKLGATRMMIVAAPSYIERYGMPSSLEEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + F             L T    +  P    +QV+    + Q  + G+G+A L +
Sbjct: 189 KGHERLGFCYARAVDGWP---LRTDGETVVLPASGAVQVSDGEGLRQLALAGAGLARLAE 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V+++     LV ++ED+       V+  Y  +      +++A  +F+   AR
Sbjct: 246 FTVREDVSARRLVPVLEDLNPGDLEEVHAVYLGQGGALPARVRAVLDFLARHAR 299


>gi|295700091|ref|YP_003607984.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439304|gb|ADG18473.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 309

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 118/292 (40%), Gaps = 5/292 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + VF  VA   SF  AA  L ++ S++S+ +  LE  +G  LF R  R + LTE G 
Sbjct: 12  LDGVEVFLSVAEHRSFRGAAAALGVTPSAVSQAVRVLEARIGATLFIRTTRSVGLTEAGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        + +L       +    +PSG LR++    +   LL+  +  F    P++++
Sbjct: 72  RFLARAKPAFEELVAASEVARGLGERPSGLLRLSVPRAVVPILLEPLIASFCEANPEVEV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++    + ID++ +  D  IRL + + +  +              +P Y      P  I 
Sbjct: 132 EISASKELIDLAAEGFDAGIRLGQFVAADMVAVPLTAPFRFVVVGSPGYFVARNRPEHID 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I +                  +PI          + +L ++     G G+A L
Sbjct: 192 DLRTHACIRWRRSGGALALWS--FNDNGQPIEVAVTGPFIASDFLGMLGAANAGIGLAQL 249

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P+ +  +      LVR+++        V+  YP   +   KL+AF + +  +
Sbjct: 250 PEPMAAEGLRTGKLVRVLDAYAPMIPGVFLYYPSRRQIMPKLRAFIDHVKSR 301


>gi|221211509|ref|ZP_03584488.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
 gi|221168870|gb|EEE01338.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
          Length = 309

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  VA  GSF  AA  L + ++++S  +  LE  +G +L +R  R + LT 
Sbjct: 1   MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLEAALGTRLLHRTTRQVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  + +      +       G+L +     + + ++   L      +P 
Sbjct: 61  DGTVLLERGRRLLAEADELDRLFRRRDRDVIGRLNVDVPSRIARRVIAPALPALFRRHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+    P 
Sbjct: 121 LQLSLGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFALINCASPDYLREHGVPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               L   H  I +    P    + +W    D       + S + VN+  + +  C+ G 
Sbjct: 180 HPDALAHGHWAIGYAS--PTTGRELDWEYGTDGGRHTLTLPSRVVVNNAETYIASCIAGM 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +P + V    ++  LV +M         V   YP     + +L AF  +
Sbjct: 238 GLIQIPRFDVAHLLESGALVEVMRAHRPAPMDVSAVYPHRRHRSRRLNAFVEW 290


>gi|171319320|ref|ZP_02908432.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095465|gb|EDT40433.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 313

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 131/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP 
Sbjct: 61  AGQRYLDRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S L+ ++L  +H    A+P YL     P
Sbjct: 121 VAVELTLSQHVPDIIDEGYDVSLQLSTTELPDSGLVSQRLGDVHSVLCASPAYLNERGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L+ H+ +     I    + ++      R   E  +   QVN   ++      G G
Sbjct: 181 RTVRDLEAHSCLQIVTPI-FPRDRWHLDGPDGRETFELPLPDFQVNIADALGAALRAGLG 239

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP         +  LVR++ +      TVY  Y        K++ F +F+  
Sbjct: 240 IGSLPMSSAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 294


>gi|242312659|ref|ZP_04811676.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|242135898|gb|EES22301.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 358

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +   L  R  R L LT  G
Sbjct: 25  TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTHLMNRSTRRLALTPAG 84

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 85  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVS 144

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 145 IELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHAAPRTP 204

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 205 RDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 262

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y   ++    NLVR++         VY  YP       K++ +   +
Sbjct: 263 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEAL 312


>gi|89901215|ref|YP_523686.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89345952|gb|ABD70155.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 324

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 118/299 (39%), Gaps = 8/299 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +    +  F      GS   AA    +S  + S+ ++ LE  +G++L +R  R L L
Sbjct: 1   MPMNELRAIATFAKAVELGSLRRAAVAQGVSPQAASQTLAQLEQHLGVRLLHRTTRNLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G +L   T      LE     ++ S    +G LRI         LL   + EF   +
Sbjct: 61  TDEGRQLLEATQPALAALERALQRVRASKDDIAGPLRIVGPQSSFVPLLWPVIDEFCRQH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+Q  + LD+   +   D  D   R+  P Q   LI R+L  + +   AAP YL     
Sbjct: 121 PDVQPDVQLDDSIGNWVQDRVDVGFRIGAPPQD-GLIARRLFPVQLIICAAPDYLARHGA 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P +++EL  H    F    P   +   W   VD  +    +   L  N     +Q  + G
Sbjct: 180 PRTLEELASHRCSVFRH--PGTGQVLPWYLQVDGEVVHRDMPLALSTNDTELELQAVLSG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             IA L             LV I+   +T   +VY  Y        +++AF +    + 
Sbjct: 238 QVIAQLSGMSAAPLIREGRLVPILTQHMTDHMSVYVYYGSRTSQPARVRAFIDLAVERL 296


>gi|66046169|ref|YP_236010.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256876|gb|AAY37972.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 294

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 11/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  +ISR+++ LE ++G++L +R  R  +LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSASLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         + H  ET +  L+  +   SG LR+      GQ ++   L   +   P +
Sbjct: 61  GEVFLPHAKTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQDNPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL    +P  
Sbjct: 121 SIDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCASPDYLARRGQPSL 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H  IT   +                P+          NS  ++   C  G G+A
Sbjct: 180 LDELRQHPCITLHAMPYWP------FIREGEPVAIRAQGAFSANSVEAVRTACKQGLGLA 233

Query: 243 LLPDYIVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +L  + V+      +L +I  EDVI    +V    P   +   +++ F + +  + 
Sbjct: 234 MLTYWDVQQEIREGSLQQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLFVDRLEAEL 289


>gi|307301452|ref|ZP_07581212.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306903509|gb|EFN34097.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 301

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 130/297 (43%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  +R+F  V  SG F  AA+ LH+S  S++R ++ LE  +G +L  R  R L LT 
Sbjct: 1   MDRWQAMRIFVQVVESGGFAPAAKVLHMSPPSVTRAVAKLEDLIGTRLLVRTTRSLKLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  ++   +     S   P+G + +      G+  +   + +FL  YP 
Sbjct: 61  AGEGYVADCRRILGEIAEAEANAAGSFTAPAGLVTVTAPALFGRIHVLPVILDFLDHYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++ I  ++  ++  +  D AIR+   + +S L+ R++ ++      +P Y     EP 
Sbjct: 121 MQVKTIFVDRVTNLVDEGLDVAIRIAS-LPASGLVARRIGSVRQVLCGSPDYFARFGEPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL +H +I    L         WL   D  I  P    L  N+  +++   V G G+
Sbjct: 180 SPQELARHRIIGREGLFGHS----EWLFGRDNNIRVPISPRLICNTNDAVLAAAVAGWGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +    Y V  +     L  ++ D       ++  + E    + +++AF +F   + R
Sbjct: 236 SRFQSYQVAPDVSAGRLKVVLADYEREPVPIHIVHAEGRMVSARVRAFVDFAAGRFR 292


>gi|197251273|ref|YP_002146352.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197214976|gb|ACH52373.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 301

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++  +    +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNH-SYDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|156933413|ref|YP_001437329.1| hypothetical protein ESA_01231 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531667|gb|ABU76493.1| hypothetical protein ESA_01231 [Cronobacter sakazakii ATCC BAA-894]
          Length = 300

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 8/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  +   GS T AA  L  + S +SR ++ LET +G++L  R  R L+LT+ G 
Sbjct: 8   LSDVEIFVTIIEKGSITAAAVALGTTASVLSRALTRLETRLGVQLVRRTTRQLSLTQAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +      +   E  + ++Q    +  G +R++     G   L   L+ F   YP I +
Sbjct: 68  HYYEQACSAFSVFERAERDIQGRGAQTVGHIRLSAPTTYGHYRLPALLQRFAAHYPGITV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L + N+++D+  +  D AIRL   +  S L+ RKL    +   AAP YL+   EP ++ 
Sbjct: 128 ELNITNRNVDLVAEGYDLAIRLG-TLPDSRLVARKLEEAPLCLVAAPAYLRQHGEPHTLA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGIA 242
            L+ H  + F  ++P       W    +    E  P+      +  L ++   V G+GI 
Sbjct: 187 ALENHRCLPF--IMPSSGRIAQWSLCEEGAPIEWTPKGQIQVSDDILGVISLAVSGAGIC 244

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              D+I +   +N  L  I+      +      Y      +   +AF  FI
Sbjct: 245 QTYDFIARPLMENGLLTEILPQTRGRTRPFSLIYAPHKGLSSASEAFIRFI 295


>gi|33592134|ref|NP_879778.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33571778|emb|CAE41284.1| LysR-family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|332381550|gb|AEE66397.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 311

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 128/295 (43%), Gaps = 9/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VAR+ SF  AAE L + +S++SRQ++ LE  VG++L  R  R + LTE G 
Sbjct: 4   LQGMELFVEVARTLSFGRAAENLAIPKSTLSRQVAELERSVGLRLLSRTTRRVELTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +      ELQ     PSG LR+    D G + L     EF   YP++  
Sbjct: 64  LYFERCQRIVAEARIAHEELQNLVETPSGPLRVNMPADFGTDFLSEAFTEFSRRYPEVTF 123

Query: 125 QLIL-DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L   +  +      D +I +   +  S+ I R L  +  H YA+P YL    EP   
Sbjct: 124 YLDLASPEHAERVFQTCDVSIEIGD-LPDSTHIARLLGVLPAHLYASPDYLARHGEPQHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I F     +       L + +R +     +   VNS   +     LG+GIA+
Sbjct: 183 DDLPRHECIQFRAGTGRVTRWP--LNSGERHVEITPGNRFSVNSVSMVRNLATLGAGIAI 240

Query: 244 L-PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L P   V+++     L RI+ D +   F VY    +      K + F  F+  + 
Sbjct: 241 LAPMGNVREDIESGRLKRILPDWLAGPFPVYAVT-DTRMLPAKTRIFVEFLMERL 294


>gi|160899223|ref|YP_001564805.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364807|gb|ABX36420.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 310

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 130/305 (42%), Gaps = 10/305 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M       L +F   A SGS +  A  L L+ ++ S  +  LE E+G+ LF R  R L L
Sbjct: 1   MPMKSLQDLDIFVRTADSGSLSATARALDLTPAAASAALKRLEAELGVTLFVRSTRSLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G             L   + +L        G L++A   DLG+N+L   L EF   +
Sbjct: 61  TQEGELFLEHCRPALAGLRQVRDQLAGGQAALRGTLQLAAPSDLGRNVLMPWLDEFQSQH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCR 178
             + ++L L ++  ++  +  D A R  +P Q SSL+   L   H     AAP YL+   
Sbjct: 121 AGVDLRLHLSDRAANVYSEPVDAAFRYGRP-QDSSLVALPLSDTHRRVLCAAPSYLQERG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQY 234
            P +  +L  H+ + F            W A     + EP    ++     N   ++ ++
Sbjct: 180 APATPHDLAGHDCLCFMLGEEVHDRWSFWPAGQGAAVPEPVHVRVRGRNVANDGDAVRRW 239

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            V G GIA    + V ++     L+ +  D  T    ++   P   + T  ++A R+F+ 
Sbjct: 240 AVAGRGIAYKSYFDVAEDLARGRLLALCTDWTTECVPLFLVAPSRRQFTPLVRALRDFVA 299

Query: 292 LKARD 296
           ++  +
Sbjct: 300 VRLAE 304


>gi|116695368|ref|YP_840944.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529867|emb|CAJ96214.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 604

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 126/290 (43%), Gaps = 7/290 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   G F+ AA++L +++S++SR I  LE +VG++L  R  R ++LT +G  LH  
Sbjct: 288 AFITVVAEGGFSKAADRLGITRSAVSRCIQKLEAQVGLRLLSRTTRSISLTREGEILHAR 347

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  +     +L++     P G+LR++ ++  G+ ++   L  F   YPDI+I+L L
Sbjct: 348 CQPSVALITEAMEDLRDLRDGPPRGRLRVSASVGFGRKVVAPLLWAFQEKYPDIEIELHL 407

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
                D + D  D +    + +  S ++ +++V +     A+P Y      P S   L  
Sbjct: 408 GCVASDFTSDRIDVSFLNGR-LADSRIVAKRIVPMQTLVCASPAYAVRRGMPESPDALML 466

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H+ I       +  E    +    R +  P  S +  N    +++  + G GIA L  Y+
Sbjct: 467 HDCINVRLPSGRVYEWEFKVEGGLRKLTPP--SRIMFNDDGLVLEAVLQGKGIAQLGGYL 524

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + D      LV  M          Y CY        +++ F + +    R
Sbjct: 525 ICDLLREGKLVHSMPQYAPDDQGHYICYLSRQHLPSRIRVFVDHMTAAIR 574


>gi|34498394|ref|NP_902609.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34104248|gb|AAQ60607.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 301

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 129/297 (43%), Gaps = 11/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA+ GSFT A ++L +S+  ++R +  LE  +G++L  R  R +TLT+
Sbjct: 1   MDRLTAMQVFAEVAQLGSFTAAGDKLDMSRPMVTRYVEELEQWLGVRLLQRSTRKVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++    +  + +  +   +  G LR+A +   G  +L G + EF   +P 
Sbjct: 61  AGLACLARCRQMLDLADEVRADASQRDGQVRGLLRVAASTSFGLAVLGGAVAEFGERHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +++  +  D AIR+        L+ R+L        AAP YL     P 
Sbjct: 121 LRVDLQLGDRAVNLIEERIDLAIRITNE-PDPGLVGRRLCDCRSLLVAAPSYLARHGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              +L+ H  +++ +          W         + R++  +  N   +++   + G+G
Sbjct: 180 EPVDLESHRCLSYSNFGRS-----EWRLRKGEEESKVRVAGNISANEASALLSATLAGAG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++L P Y+         L  ++         ++  YP        L++  +F+  K 
Sbjct: 235 VSLQPSYLAAPYVRRGELAALLPAWQPAVLGIHALYPSRRLLPLSLRSLLDFLVEKL 291


>gi|33598565|ref|NP_886208.1| LysR family regulatory protein [Bordetella parapertussis 12822]
 gi|33603512|ref|NP_891072.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
 gi|33574694|emb|CAE39348.1| LysR family regulatory protein [Bordetella parapertussis]
 gi|33577636|emb|CAE34901.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
          Length = 304

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 140/295 (47%), Gaps = 7/295 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  VAR  SF  AAE+L +S + +S+++  LE  +G++L +R  R +++T +G +
Sbjct: 8   EDLRVFLHVARLSSFAAAAEELRVSTAYVSKRLRVLEGVLGVRLLHRTTRRVSVTREGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      V   ++    E+  +   P G LR++ +   G+N++   L   +  +P +Q++
Sbjct: 68  VFLWAQRVLDNVDQLMQEVAATRAVPRGLLRVSCSFGFGRNVVGPMLSRLVERFPALQVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R+L   H    AAP YL     P + +E
Sbjct: 128 LEVFDRLVDVASEGFDLDVRVGDDI-APHLIARRLADNHRLLCAAPDYLARRGTPRTPEE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ +   +               +R I       L  N+    +++ V G GI L  
Sbjct: 187 LAGHDCLVIKERDHPFGVWTLRAGAENRTIKV--TGPLSANNGEIAVRWAVDGRGIVLRS 244

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            + V     +  LV ++      +  ++  YP  L+N+ K++    F+  + R +
Sbjct: 245 HWDVAPLLRDGLLVPLLAPWRQDA-NIWAVYPSRLENSAKVRVAVEFLQEEFRRF 298


>gi|325915436|ref|ZP_08177750.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325538318|gb|EGD10000.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 339

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKH-NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H  + T  D   +  E       + R   +PR++      +  +      G GI
Sbjct: 188 PSELANHTTMSTSEDEAHQRWELHGPNGEMRRVDLQPRLAGF---DFPLLQSMARDGFGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP+ +  +   +  L  ++     P    +  +         ++ F +F+  
Sbjct: 245 TMLPETVCAEAVRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 298


>gi|241762436|ref|ZP_04760514.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373030|gb|EER62688.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 304

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 130/289 (44%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+ F +VA+  SFT AA +L +SQS++S  +  LE  + + L  R  R +T T  G
Sbjct: 7   NLNDLQSFLIVAQEKSFTKAAAKLGVSQSALSHTVRQLEARLNLTLLIRTTRSVTPTSAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +  +  + ++E     + E   +P+G +RI +T D    +++  +K FL  YP ++
Sbjct: 67  EYLIQNMAPHFDQIEKQLASIGELRNQPTGTIRITSTDDALAYVIRPKIKGFLQKYPGVK 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+ D K +DI  +  D AIRL + +            I      +P Y +N   P + 
Sbjct: 127 IELVSDLKLVDIFTEKFDAAIRLGENVTKEMASVPLTPDIRFTVVGSPEYFQNKPIPETP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  IT    +P     + W      R I       L  NS   I   C+ G G+A
Sbjct: 187 QDLLNHQCITI--RLPTHGGIYAWEFEKAGRDIKIRVDGPLVFNSIFPIRNACLDGLGLA 244

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P+ + +   +   L+ ++ D        + C+P   +N      F  
Sbjct: 245 HMPEIMAQKYIEEGRLIPVLGDWCPYWSGYHLCFPHHYENIRPFSLFLE 293


>gi|21242405|ref|NP_641987.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107845|gb|AAM36523.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 333

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 63  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 123 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 182

Query: 183 IQELDKH-NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H  + T  D   +  E       + R   +PR++      +  +      G GI
Sbjct: 183 PSELANHTTMSTSEDEAHQRWELHGPNGEMRRVDLQPRLAGF---DFPLLQSMARDGFGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP+ +  +   +  L  ++     P    +  +         ++ F +F+  
Sbjct: 240 TMLPETVCAEAVRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 293


>gi|301165804|emb|CBW25376.1| putative lysR-family transcriptional regulator [Bacteriovorax
           marinus SJ]
          Length = 299

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 127/293 (43%), Gaps = 4/293 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D  D L    +VA + SF  AAE L++S  +ISR IS LE  +G+ L  R  R +  
Sbjct: 1   MNKDQLDGLVALKLVAENKSFKKAAEILNISTPAISRIISNLERRMGVILLTRTTRNVNP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G            ++   Q  ++    +PSG LRI   +   Q+ L+  ++EFL  Y
Sbjct: 61  TEAGITFLNKAGPAIDEIIDAQSSVRTLGNEPSGLLRINAPVIFYQHYLKDYVREFLKKY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +Q+++  D++ +DI     D  IR+   I    +  +    I     A+P Y+K    
Sbjct: 121 PKVQLEIFSDDQAVDIFSQGFDAGIRVDDIIAKDLIALKLFGPIDFITVASPKYIKEFGS 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   +EL  HN I         + D        +         L +N+   I Q  +  S
Sbjct: 181 PSHPKELLDHNCILLRFGSGTSVYDKWEFEDKKKEFTVRVNGNLILNNSEHIRQAALSHS 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           GI  +    V ++     L  ++E+  T S   Y  YP  +  +  L+AF NF
Sbjct: 241 GIIYIEKGSVINDLERGKLKVVLEEYKTQSTGFYLYYPHKIHISPALRAFINF 293


>gi|294625160|ref|ZP_06703803.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600532|gb|EFF44626.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 338

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKH-NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H  + T  D   +  E       + R   +PR++      +  +      G GI
Sbjct: 188 PSELANHTTMSTSEDEAHQRWELHGPNGEMRRVDLQPRLAGF---DFPLLQSMARDGFGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP+ +  +   +  L  ++     P    +  +         ++ F +F+  
Sbjct: 245 TMLPETVCAEAVRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 298


>gi|237808161|ref|YP_002892601.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500422|gb|ACQ93015.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 296

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 140/302 (46%), Gaps = 13/302 (4%)

Query: 3   FDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
            +WD+LR   VF  V  SGS T AA++L ++ S++S+ I  LE  +G+ L +R  R LTL
Sbjct: 2   LNWDRLRGMVVFASVVESGSMTSAADKLGMTASAVSQHIRQLEQSLGVTLLHRSTRKLTL 61

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +E G   +  T+ +   +   +  LQ    +P G+++I   + L    L   L  F+  Y
Sbjct: 62  SEAGRHFYPGTAAMISAVREAEEGLQILRDQPVGEVKITAPLGLSHGPLNSVLIPFMQQY 121

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P ++I L   + + D+  +  D AIR   P++ S+L+ ++L +  M A A P YL N   
Sbjct: 122 PGLKITLDCSDVERDLIAEGYDLAIRFG-PLKDSALVAQRLTSCRMIAVATPAYLDNAGI 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++L +   I         ++  +      +   +     L  +  L   Q+C+   
Sbjct: 181 PQQPEQLMQLRWILSQPQTSLSLQHTHGQRWQGKVKAQ-----LVGSDILLQRQWCLAHM 235

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+++ P   + +   +  LV ++ D  +PS  +Y   P       K K   + + L  R 
Sbjct: 236 GVSIQPYSEIIELLADETLVPVLPDWQSPSAGLYAVTP-GKDIPAKAKMIIDALKLFFRK 294

Query: 297 WK 298
           ++
Sbjct: 295 YE 296


>gi|254488099|ref|ZP_05101304.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214044968|gb|EEB85606.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 295

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 6/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +   GSF  AAE L +S + +SR++  LE  +G  L  R  R +++T+ G    
Sbjct: 7   MHAFRRIVERGSFARAAEDLGVSPALLSREVKLLEESLGSTLLTRTTRSMSVTDAGRLYF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +  +++ +    G L++  +   GQ ++   L  FL  YPDI++ L 
Sbjct: 67  DEAIGILDAVTNIENRIRDGAGAVRGHLKVNASSSFGQTVIAPVLPGFLETYPDIRLTLS 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD++ +D+     D +IR+R  + +S+L+ RK+ T+    +A+P YL++   P   +++ 
Sbjct: 127 LDDRVVDMIEGGFDVSIRIRAAMPNSALVARKIGTMRQRIFASPSYLEHAGVPQDPEDIR 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H ++ F              +       +P++   +V + L +    + G GI  LPD+
Sbjct: 187 RHRVVGFLLADHLTTWALTGPSDTYALDLDPKV---RVGNSLVLRDLLIAGQGIGTLPDF 243

Query: 248 IV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +    +    LVR++     PS  ++      L    K+ AF + +    R
Sbjct: 244 VSDGPERRGELVRVLPGWELPSPEIFAVTASRLGMDTKVTAFLDHLRTALR 294


>gi|192293587|ref|YP_001994192.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192287336|gb|ACF03717.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 304

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 8/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   +++R F  +A  GS +  A  L++ QS+++RQ+  LE  VG  L  R  R +TLTE
Sbjct: 5   AVTIERIRTFVRIAERGSLSAVARDLNVGQSTVTRQLQELEAAVGAPLLSRTTRRVTLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS+ +    ++   LE    E   +S  P+G +RI+ T   G       +  F   YPD
Sbjct: 65  EGSRYYARCVQILRLLEQAGDEALGASGAPAGTIRISCTASFGVLHASRLIFAFQDRYPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I   L ++ +D+  +  D AIRL  P+  SSL  R L   H    A+P YL     P 
Sbjct: 125 IGIDFGLTDQRVDLVREGVDLAIRLA-PLADSSLKLRTLGHSHRLLVASPDYLAAHGRPT 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
           S Q+L  H  +   ++      D   L   D+ I   P    L+V+  L+  +  + G G
Sbjct: 184 SPQDLSNHQGVRMVNV---AGSDLLVLQGPDQEIHRVPFGGRLRVDHGLAAREAMIAGRG 240

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA    ++V D      L  ++ +   P   +            +++   +F+  +
Sbjct: 241 IAATHRWLVADLLAAGRLEVLLPEYRLPPVPLNLLIVPERAGIARVRLLIDFLAEQ 296


>gi|85706941|ref|ZP_01038031.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
 gi|85668552|gb|EAQ23423.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
          Length = 306

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEEHLGVRLFQRTTRSLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +   SE+   +E  + ++   +  P G L +A  + +G+ L+   + EFL  YP
Sbjct: 60  EQGQSFYSGASEILEAVERAEAQIVNMTENPKGSLYVAAPLGVGRRLIAPQVPEFLQAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L L ++ +D++ +  D A  L +P + S+L  RK+  +     A+P Y+     P
Sbjct: 120 EVKVRLRLTDRKVDLTTEGLDLAFFLGQP-EDSNLRIRKIADVARILCASPDYVAKRGLP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S  +L  D H  +      P   E    L+T D P         + +    +  + + G
Sbjct: 179 ESGDDLIADGHECLNL--RFPGATEFQWLLSTPDGPKRFRVSGRCESDDGDVLTDWALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+AL P + + ++     L+ +          +   +        K + F  F+  +
Sbjct: 237 QGVALKPIFEIAEHLRAGALIPVATRTPPEPIQMACLFTHRRWQDPKTRLFMEFMVER 294


>gi|170694624|ref|ZP_02885776.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140506|gb|EDT08682.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 298

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 125/292 (42%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++++RVF  VA   SFT A++ L + +++++  +  +E  +G +L  R  R + LT 
Sbjct: 1   MDRFEEMRVFVRVAERQSFTRASDDLQIPRATVTNLVKRMEERLGARLLERTTRTVRLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +         P G LR+     L ++ +  +L  FL  YPD
Sbjct: 61  DGQAYYGRCVRLIADLEDAEGSFSNL--APKGLLRVNLQGTLARHFVVPSLPAFLTRYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL+   EP 
Sbjct: 119 IELTIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLEKYGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L  H  + +              +   R         + V          + G GI
Sbjct: 178 DPSALAAHRAVNYVSSATGKPVPLE-FSIEGRNTPMLLPGAVSVTGVELYTGSALAGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V+D      L  I+     PS  V   YP+  + + +++ F  ++
Sbjct: 237 VQVPRYRVRDELAAGRLKIILAGFPPPSLPVSVLYPQNRQLSSRVRVFAQWL 288


>gi|213970374|ref|ZP_03398503.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|302132570|ref|ZP_07258560.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213924845|gb|EEB58411.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 307

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 126/297 (42%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  ++SR+++ LE ++G++L +R  R ++LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAVSRRLAALENDLGVRLVHRTTRSVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    E  +  L+  +   SG LR+      GQ ++   L E +L  P +
Sbjct: 61  GEVFLPHAKTMLQASEAARATLKADAGTASGILRVTAPSVFGQTVIMPLLPELMLENPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL     P  
Sbjct: 121 SIDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCASPDYLMRRGTPTV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H  I    +                P+          NS  ++      G G+A
Sbjct: 180 LDDLRHHPCIALHGMPYWS------FTRDGEPVTIRAQGSFSANSVEAVRTASKQGLGLA 233

Query: 243 LLPDYIVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +L  + ++      +L +I  ED +    ++    P   +   +++ F + +  + +
Sbjct: 234 MLTYWDIQQEIREGSLRQIDFEDALPEQLSITAMLPTRQRVPHRVRLFVDRLEAELQ 290


>gi|170740203|ref|YP_001768858.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194477|gb|ACA16424.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 307

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 135/301 (44%), Gaps = 7/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +L +   +A +G+ + AA+   LS ++ SR ++ LE  +G+ L  R+ R L+LT+
Sbjct: 1   MDRLGQLELLVAIAEAGTISGAAQARGLSVAAASRTLAALEERLGVLLVRRNTRTLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G K       +   +  ++ E+  +++ PSG LR++ ++  G   +   L  +   YP+
Sbjct: 61  EGGKFLARARGILADVADSEAEVTGAALDPSGLLRVSASLSFGLLHIAPLLPAYHARYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + + N+ +D+     D AIR R+     ++  R+L         AP YL     P 
Sbjct: 121 VRVHVEISNRYVDLIDAGIDVAIRTREFEPDRAITIRRLAETRRILTGAPSYLARAGCPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H L+ +          F      +  +  P    L+ N    +    + G G+
Sbjct: 181 HPRDLARHALLIYVYANNPNELTFT---RGEETVRVPAHGLLESNDGQILRAAALNGLGL 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + P YIV D+     LV +++    P   + F YP     + K+++F  F+        
Sbjct: 238 LVQPTYIVHDDVAAGRLVPVLDAWDLPRLRINFAYPTRKHLSAKVRSFIAFMTAHFEAHD 297

Query: 299 F 299
           F
Sbjct: 298 F 298


>gi|172065035|ref|YP_001815747.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997277|gb|ACB68194.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 313

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  VA  GSFT AA++L ++ +  SR ++ LET +  +L  R  R + LT+
Sbjct: 1   MDTLQMMRIFVRVAEEGSFTSAAQRLDITTAYASRSVAQLETHLRTRLLNRSTRRIALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   ++  + E  ++  KPSG+L +  T   GQ  +   +  +   YP 
Sbjct: 61  AGQRYLDRCQRILGYIDEAEAEAADAQAKPSGRLHVHATTSFGQAYVVPAVVRYRQRYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + ++L L     DI  +  D +++L    +  S L+ ++L  +H    A+P YLK    P
Sbjct: 121 VAVELTLSQHVPDIIDEGYDVSLQLSSAELPDSGLVSQRLGDVHSVLCASPAYLKERGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+++L+ H+ +     I    + ++      R   E  +   QVN   ++      G G
Sbjct: 181 HSVRDLEAHSCLQIVTPI-FPRDRWHLDGPDGRETFELPLPDFQVNIADALGAALRAGLG 239

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  LP         +  LVR++ +      TVY  Y        K++ F +F+  
Sbjct: 240 IGSLPMSSAVPALASGALVRVLPEYRLQKLTVYTLYASRQYLDAKIRTFVDFLRE 294


>gi|54303246|ref|YP_133239.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46916674|emb|CAG23439.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 297

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 135/295 (45%), Gaps = 12/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +RVF  V  S SF+ A   LH++ SS++R I  LE ++ + LF R  R L LTE+G 
Sbjct: 2   LDLVRVFTQVVESSSFSKAGHALHMAPSSVARNIDNLEKQLRVTLFKRSTRQLLLTEEGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 S++    +     + +++  PSG LRI+     G   +   L  FL  YP++ +
Sbjct: 62  YFLIGASKLMEDADQLIRSMDKTNDVPSGTLRISVFESFGNLCINPILPAFLERYPNVTV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + LD++ +D++ +  D  IR+ +P+  SSL  R L+  H    A+P YL+ C  P + +
Sbjct: 122 DIELDDRMVDMNAENIDLGIRIGRPV-DSSLNARMLMPNHTILCASPSYLERCGTPTTPE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E+ +HN +       +    F+                L       +M   + G+G+ LL
Sbjct: 181 EVSQHNCLLLSRDRKRNYWHFS---NKKHHKKVAVKGNLYSRGGSPLMSAALGGTGLLLL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPS-----FTVYFCYPEALKNTGKLKAFRNFIF 291
             ++V D+     L +++ D            +Y  Y        +L+AF +++ 
Sbjct: 238 SSWMVSDHIKEGKLQKVLPDWTASPHEHAGIEIYAVYRGGKYPKPQLRAFIDYLV 292


>gi|146293876|ref|YP_001184300.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145565566|gb|ABP76501.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 320

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 119/308 (38%), Gaps = 19/308 (6%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT 
Sbjct: 1   MDRLEAAKVFVTIVERGSMISAANALDMSRSMVTRYLSEMEDWSGARLLHRSTRSLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +                 P G LRI+ +  +   +L   ++++L  YP 
Sbjct: 61  AGEQVLDYCHRLLELANEVPAVSHAGVTIPRGLLRISCSQFMAHQILAPVVRQYLASYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             +   + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      L
Sbjct: 121 ASVNFHVSSQTVDLVAERIDLAIRITNEL-DPNLIARRLGECESVVCAAPSYLAARAAVL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--------------DRPIGEPRISCLQVNS 227
             ++L +HN +T+          +                     +    P       N 
Sbjct: 180 HPEDLTQHNCLTYSYFGDVMWRFYQTDVGAKQAQALNPESKLNQGQAFNVPVDGNFSAND 239

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            + ++   + G GIA+ P +  K   D+  LV ++ +    S  VY  Y         L+
Sbjct: 240 SMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFKPQSLGVYGVYQSRKHMQPALR 299

Query: 285 AFRNFIFL 292
              + +  
Sbjct: 300 VMMDMLVA 307


>gi|188592169|ref|YP_001796767.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|170938543|emb|CAP63530.1| putative TRANSCRIPTION REGULATOR PROTEIN, LysR [Cupriavidus
           taiwanensis LMG 19424]
          Length = 306

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 128/290 (44%), Gaps = 5/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A +GSF  AA +L L++S+I + I+ LE  VG +LF R  R L LT+ G   +
Sbjct: 12  ITAFVAAAEAGSFAQAAVRLGLTRSAIGKAIARLEARVGARLFVRTTRSLVLTDDGQAFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++   +L+  Q  L+      +G++R++  +  G++ +   L +    +P ++++  
Sbjct: 72  ERCAQALEELDAAQHMLEAGRGAVAGRVRVSAPVVFGRHHVAPLLLQLADRHPQLRLEGN 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D + D  D AIR  +   S +L+ R L    M   AAP YL+    P S   L 
Sbjct: 132 FTDRLVDFADDGIDLAIRSGRLPDSDTLVARPLGAQAMVLCAAPGYLRRHGTPASAAALL 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + +  L       +    T   P+       L  +   ++    + G+G+A LP +
Sbjct: 192 SHQCLVY--LRGSQPVPWLLADTDGNPVRPELSHRLAFDDIDTLAMAAIRGAGVANLPLW 249

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +V+       LVR++         ++  +P       KL+   + +    
Sbjct: 250 LVRAPLQQGTLVRLLPQASASRTPLHLVWPRTRFLPHKLRVTIDLLVAAL 299


>gi|86144701|ref|ZP_01063033.1| Putative transcriptional regulator, LysR family protein [Vibrio sp.
           MED222]
 gi|85837600|gb|EAQ55712.1| Putative transcriptional regulator, LysR family protein [Vibrio sp.
           MED222]
          Length = 293

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 132/295 (44%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  +G F+ AAE L +  + +SR +S +E+++G+ +F R  R + LTE+G +
Sbjct: 6   DDLEMVLTVVDAGGFSAAAETLDVQVAKVSRSVSKVESQLGVSIFNRTTRRVELTEEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      +++ + E+      P G+LR+        + L   ++ F   YPDI+++
Sbjct: 66  FVDSVRVGLQMIQSAEEEIVSRGELPKGRLRVDAASPFVFHQLVPLVQSFKEAYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    +H  A+P YL     P   ++
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LSDSTLHARPLGKSLLHIVASPDYLAKRGLPTKPED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H ++ F                   P        +  ++  ++ Q  + G+GIA L 
Sbjct: 185 LSSHQIVGFAGNKVLNHWPL--------PNQSDVAPTVTASNGETVRQLVLAGNGIACLS 236

Query: 246 DYIVKDN---PNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++V+++     L+ I+E      T    V   Y ++   + ++ AF +FI  + 
Sbjct: 237 GFMVQEDMAAGRLIPILEQDKLANTDRERVNAVYYKSSSVSKRISAFIDFIQPRL 291


>gi|317046798|ref|YP_004114446.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316948415|gb|ADU67890.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 307

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 134/304 (44%), Gaps = 9/304 (2%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M  D  W  L    V+A  GSFT AAE+L +S++++S++I  LE   G+ L  R  R + 
Sbjct: 4   MKTDALWVHLHWLTVLAELGSFTRAAERLDVSKAAMSQKIKELEQMAGVALVQRTTRSVR 63

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT  G KL     + + ++E +   +++ +    G +R++  +   +  L   L +FL  
Sbjct: 64  LTSAGEKLVDELRDPFARIEQSFFSVRDEAGPVRGMVRVSAPVAFARQQLVPILGDFLRE 123

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP ++IQL + ++ + +  +  D AIR  + +  +  +   L        A+P YL+ C 
Sbjct: 124 YPQVRIQLDVTDRLVSLGSEGFDLAIRHSQQLPETH-VALPLCETQTLLVASPAYLRECG 182

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P + Q L +HN + +   +      F         +          N+  SI    + G
Sbjct: 183 TPQTPQALQQHNCLYYPRGLESPQWRFRPQNDGGETVQVRIQGNFATNNSESIRDAALQG 242

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFL 292
            GIA+LPD+          L +++ +  +       ++   P A +    +  F +++  
Sbjct: 243 IGIAMLPDFSASAALAAGTLQQVLPEWRSVDAFADRLWVVRPYAAQVPRAVTTFIHWLRA 302

Query: 293 KARD 296
           +  D
Sbjct: 303 RFVD 306


>gi|330873150|gb|EGH07299.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963233|gb|EGH63493.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 315

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 13/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSSVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILASVEEAEAEASDAHARPAGQLKVHSMPGVGQHYVIDAIARYRRNHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K      
Sbjct: 121 VAFDLTMTHRVPDLLEEGFDVSIVLASELADSGFVSQRLGITYSIVCASPDYVKTFGMAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
              +L  H  +    L+        WL   D P G+  +    S L VNS  ++      
Sbjct: 181 KPADLLNHACL---RLVSPVFPLDKWLF--DGPEGQEMVTINSSPLLVNSADAMKTAISS 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI +LP Y   +   N  LVR++ D  +    +Y  YP       K++ +  ++
Sbjct: 236 GMGIGILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPSRQYLDAKIRTWVEYL 291


>gi|319780112|ref|YP_004139588.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166000|gb|ADV09538.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 306

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 125/296 (42%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + VF  V   G+ + A   + +S +  S +I  LE  +G++LF R  R L  TE G+
Sbjct: 4   LDNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTEHGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +V   +   +  +   S +P G +R+   + LG+ L+   + +F   YPDI++
Sbjct: 64  VFYGGAKQVLEAITEAEAAVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPDIEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L + ++DI  +  D A RL   I+ SSL  R ++       AAP YL+   EPL  Q
Sbjct: 124 RLRLSDHNVDIMKEGIDVAFRLG-IIEDSSLRMRGIMECERVLVAAPKYLEARGEPLEPQ 182

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL   KH+ +          E    L T   P           +    +  + + G GI 
Sbjct: 183 ELIGKKHDCLML--RYSGAREYVWTLQTPTGPQKFEVHGPYDTDDGDVLTGWALSGRGII 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             P + V+    +  L  I+             YP       K++   +F+  + +
Sbjct: 241 NKPRFEVEPFIRDRRLKVILPSTPPTPVQFAAVYPHKKLQDPKVRLLLDFMAERCQ 296


>gi|304396844|ref|ZP_07378724.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304355640|gb|EFM20007.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 299

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++LR +  V  SGS T AA QL  + S ISR +S LE+++   L +R  R L LT
Sbjct: 1   MKITLEELRAWVAVVDSGSITAAASQLAQTSSGISRALSRLESKLQTTLLHRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   +E  + ++      PSG+LR+        +++   + +F   YP
Sbjct: 61  EEGQVFLEHARQILASVEQAEEQIALRREMPSGRLRVNAATPFMLHVIVPLVDDFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  D+  ID+     D AIR+ + ++ S+L  R L +  +   A+P YL     P
Sbjct: 121 LIQLELNTDDIMIDLLEQQTDIAIRIGE-LRDSTLHARLLGSSAIQLMASPAYLAKAGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L +H  I F    P+ +  +  L      +       +  +S  +I Q  + G G
Sbjct: 180 QSVADLAQHQKIGFSH--PESLNVWPVLQPDGDFMRIK--PTISASSGETIRQLALAGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA + D+  +++     LV ++  +       V+  Y      + ++  F +F+  +
Sbjct: 236 IARISDFFSREDCATGRLVPVLSAETRDLRLPVHAVYYRNTTLSSRIGCFLDFLRSE 292


>gi|322832357|ref|YP_004212384.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167558|gb|ADW73257.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 299

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 139/300 (46%), Gaps = 16/300 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR GS T AA +L ++  S+S+ +  LE  +G  LF R  R + LT+ G 
Sbjct: 6   YNQIRIFQSIAREGSITAAARKLEITPPSVSKALKLLEQHIGHPLFVRTTRRIELTDAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L + TS     LE+    +++ + +PSG +RI  +      +L+  + EF   YP IQ+
Sbjct: 66  QLLQQTSRAVASLESAVESIKDLNQEPSGLVRITLSRFAYLLILKPFMAEFCQSYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           ++ + +  +++  +  D  IR    ++ S ++ R L+       YA+  YL     P   
Sbjct: 126 EISVYDGTVNMVDERFDLGIRFGDILEES-VVARPLMKPFREGLYASAAYLAEHGTPKLP 184

Query: 184 QELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +L +H LI +       L+P  +ED     TV+ P        L  N    +      G
Sbjct: 185 ADLHQHQLIGYRFITNNRLLPLMLEDKGQQLTVEMP------GQLISNDIDVMADGIRSG 238

Query: 239 SGIALL--PDYIVKDNPN-LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI  L  P Y ++ +    + +M         VY  Y +      ++KA  +F+ +K +
Sbjct: 239 LGIGRLFEPVYELQPDKEQFIPVMMPYWKTYPPVYLYYLKNTGKAKRVKALIDFLMMKTK 298


>gi|161616386|ref|YP_001590351.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|213160819|ref|ZP_03346529.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213428316|ref|ZP_03361066.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213586678|ref|ZP_03368504.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|289829154|ref|ZP_06546809.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|161365750|gb|ABX69518.1| hypothetical protein SPAB_04195 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|312914395|dbj|BAJ38369.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321225211|gb|EFX50270.1| Transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322614508|gb|EFY11438.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618270|gb|EFY15161.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625983|gb|EFY22797.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626753|gb|EFY23550.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631321|gb|EFY28081.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635412|gb|EFY32126.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643412|gb|EFY39976.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647019|gb|EFY43520.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649748|gb|EFY46175.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655578|gb|EFY51884.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658392|gb|EFY54657.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664384|gb|EFY60580.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667396|gb|EFY63558.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674644|gb|EFY70736.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675725|gb|EFY71798.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682361|gb|EFY78384.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684774|gb|EFY80775.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323196148|gb|EFZ81308.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196714|gb|EFZ81859.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204351|gb|EFZ89360.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207699|gb|EFZ92646.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210011|gb|EFZ94916.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214274|gb|EFZ99027.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219048|gb|EGA03554.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225029|gb|EGA09282.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230381|gb|EGA14500.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233357|gb|EGA17451.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239394|gb|EGA23444.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242355|gb|EGA26381.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247291|gb|EGA31256.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250381|gb|EGA34265.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256829|gb|EGA40544.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263887|gb|EGA47406.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264092|gb|EGA47600.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271649|gb|EGA55068.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 303

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 129/286 (45%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +     +   +F  +A                N  ++++++   G+GIA +P  
Sbjct: 180 SHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGTGIAYVPLM 236

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V D     +L  ++    +    VY  Y E  K   K++   N +
Sbjct: 237 WVIDEINRGDLEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINAL 282


>gi|39934791|ref|NP_947067.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39648641|emb|CAE27162.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           CGA009]
          Length = 305

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 128/301 (42%), Gaps = 9/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  VA    F  AA +L LS S+++R ++ LE  +G +L  R  R + LT+
Sbjct: 1   MDRLDTMTAFVAVADLQGFAPAARKLGLSPSAVTRMVAALEERLGTRLLQRTTRSVALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +   +E          V PSG+L ++  +  G+  +   L ++L  YP+
Sbjct: 61  TGARYLERMRRILADIEEADTSAAAERVTPSGRLVVSAPVGFGRRHVAPLLSDYLRRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +L L +  I++  D  DCA+R+   +  SSL+ R+L  +     A+P YL     P 
Sbjct: 121 VTGELRLSDLMINLVEDGVDCAVRIGH-LSDSSLVARQLGAMRRIVVASPAYLAARGVPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E+  H++I FG         F       R    PR   L  N     +     G G+
Sbjct: 180 MPAEIATHDVIHFGQTGAPVGWHFVVDGRDVRIACTPR---LVSNVADVAILDAERGGGL 236

Query: 242 ALL---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +             L  ++ +   P   +   YP +   + K++AF + +  +  DW+
Sbjct: 237 TRVLAYQAADAIAAGRLQIVLANYEVPPLPIAIVYPTSRLLSAKVRAFID-LAAETSDWR 295

Query: 299 F 299
           F
Sbjct: 296 F 296


>gi|312795950|ref|YP_004028872.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312167725|emb|CBW74728.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 328

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 126/296 (42%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  + SFT AA+Q++ + +  SR +S LE  +  +L  R  R + LTE
Sbjct: 16  MDTLQNMRVFVRVVEAKSFTAAAQQMNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   ++  + E  ++  +P+G+LRI  T   GQ  +   +  +   YP 
Sbjct: 76  AGERYLLRCEQILAYVDQAEAEAADAHARPAGRLRIHATTSFGQYYVVPAVTRYQERYPA 135

Query: 122 IQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + + L L     D+  +  D  +++    +  S L+ ++L   +    A+P YL+    P
Sbjct: 136 VSVDLTLSQHVPDLLDEGYDVTLQVSANELPDSGLVSQRLGDSYSVLCASPAYLEKRGTP 195

Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            S+ +L  H  +     + P     F+    ++    E      QVN   ++      G 
Sbjct: 196 RSVSDLAGHTCLRIVTSIFPGDHWRFDGPDGIE--TIELPAPTFQVNVSDALAVALREGM 253

Query: 240 GIALL--PDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  L  P  +    N  LVR++ D      T+Y  Y        K++ +  F+  
Sbjct: 254 GIGALLTPSALPALRNGTLVRVLPDHKMQKMTIYAMYASRQYLDAKIRTWVEFLRE 309


>gi|332530401|ref|ZP_08406346.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040212|gb|EGI76593.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 306

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 131/296 (44%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D ++ F  V  + SFT AA+ LH+S++++++ +  LE  + +KL  R  R + +T 
Sbjct: 1   MDRFDAMQAFARVVETRSFTQAAQTLHMSKTTVTQLVQQLEARLRVKLLNRTTRQVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   L+  +  L  ++  P G+LR+     L + +L     +F   YP+
Sbjct: 61  DGAAYYERVVRLLADLQDAETSLSSAAAAPHGRLRVDVPSPLARLILVPAFADFHARYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L + ++ +D+  +  DC +R  +P    SLI R +  + +  YAAP YL     P+
Sbjct: 121 IQVHLGVSDRVVDLIDENVDCVVRGGEPG-DPSLIARHVGDLAIRLYAAPAYLARAGTPV 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              +L    H ++ F       +         D      R   L V+   + +   ++G 
Sbjct: 180 HPLDLETAPHQIVGFLWSSTGRILPCTLRRGEDSVEVRGR-YALAVDDGNAYLAAGLVGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G   LP Y+     +   L  + ED       +Y  YP       +L+ F +++  
Sbjct: 239 GALWLPHYLAAAHVERGELRPLFEDWSIAPMPLYLAYPPKRHVGARLRVFIDWVVE 294


>gi|167565693|ref|ZP_02358609.1| transcriptional regulator [Burkholderia oklahomensis EO147]
          Length = 322

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 125/293 (42%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +  +++    E + + ++PSGKLRI     LGQ+ +  ++  +    P
Sbjct: 60  ESGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  +  ++  +  D +I     +  S  + +   T      A+  YL     P
Sbjct: 120 DVSVELTLAQRMPNLVEEGYDVSIVSVSHLPDSGYVAQTCGTSCSVLVASREYLARHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L KH  +          E        D  + E   +  Q N   ++      G G
Sbjct: 180 TTPEDLAKHVCLRLDTPASPGGEWRLERDDGDETVYELPPAPFQANVPDALSVAVRAGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +  Y   D+     LVR++ +    + +VY  Y        K++ F + +
Sbjct: 240 IGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHL 292


>gi|107028439|ref|YP_625534.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686434|ref|YP_839681.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|254250479|ref|ZP_04943798.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|105897603|gb|ABF80561.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652149|gb|ABK12788.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|124879613|gb|EAY66969.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 301

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +  +S  +  LE ++G+ L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMASFTRAAESLGIQKGRVSTVVRTLERDMGVALLHRTTRRVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   +++  +++  Q           G+LR+    +L ++++   L + +  +PD++
Sbjct: 63  RAFYARATDLLAEVQELQSMFSGRGASLRGRLRVDMPTELARSVVVPALPQLMAAHPDLE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  PI   +LI R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLVREGFDCVIRLG-PIADETLIARPLGRLRMTNAASPDYLARHGVPRTL 181

Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L    H +I +   +      + +    D     P  S +QVNS  +     + G G+
Sbjct: 182 ADLHSQGHRMIHYTLTLGARHPGWEYPDG-DGYAWLPLPSAMQVNSVQTYHAAGLAGIGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                  +    ++  LV ++ D+                 + +++AF ++I
Sbjct: 241 IQAGYSALAHHIESGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFMDWI 292


>gi|330900649|gb|EGH32068.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 304

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 11/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D L VF  VAR  SF  AA++L +S + +S++I  LE  +G+ L +R  R +++TE G
Sbjct: 6   SLDDLNVFVHVARRSSFVGAADELGMSAAYVSKRIRLLEQGMGVVLLHRSTRQVSITEDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++     +   ++    E+     +PSG LR+ ++   G+  +   L E    YP + 
Sbjct: 66  ERVYEWARGMLDSVQQMGEEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAARYPKLD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YL     PL++
Sbjct: 126 IRLDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPGYLNLHGTPLNL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+ +   +           L              L  N      Q+C+ G G+ L
Sbjct: 185 GELANHDCLVIKERDRPFGIWH--LNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVLL 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              + V+       LV+++ D    +  ++  +   L ++ K++    F+    RD+
Sbjct: 243 RSLWDVRTDLAEGRLVQVLPDYRQDA-DIWAVHTSPLMSSAKVRVTVEFL----RDY 294


>gi|149908122|ref|ZP_01896786.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149808664|gb|EDM68597.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 303

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 128/289 (44%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V + GSFT AA++++++ S++S+ I+ LE  + +KLF R  R L +TE G K+
Sbjct: 13  DLASFTLVVQEGSFTAAAKKINVTPSALSKTITRLEQALSVKLFERTTRKLIITEAGKKI 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     + +  +           KP+G + +A        +LQ  +  FL  YP +Q++L
Sbjct: 73  YDQCVPMVNAAKQVVEISSIEHTKPAGSITVAAPEAFLNVVLQPFVVPFLQQYPQVQLKL 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  IDI     D A  L       +L+ +++   ++   A+P YLK    P   ++L
Sbjct: 133 RAIDGPIDIFEHGIDIAFMLTDK-PDENLVLKEIAKTYLVLCASPDYLKEKGIPSHPEQL 191

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +   +     + DF      D            VN     +   + G GI + PD
Sbjct: 192 KQHDCLYLAENETDHIWDF---VKGDESHTVTVSGRYAVNHSQMRLNGVINGLGIGIFPD 248

Query: 247 YIVKDN---PNLVRIMEDVITPSF--TVYFC-YPEALKNTGKLKAFRNF 289
           ++V++     ++  ++ D    S    +    Y +      KL+ F ++
Sbjct: 249 FVVQEAISKGDVTEVLCDWTIKSNYQGIIALQYAQTKYMPAKLRVFIDY 297


>gi|330816957|ref|YP_004360662.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327369350|gb|AEA60706.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 299

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  + SF+ AAE L L +SS++  +  LE  +G  L  R  R L+LTE
Sbjct: 1   MDKLHAMTTFVRVVEARSFSKAAETLSLPRSSVTTTVKQLEAYLGTPLLRRSTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + +  L   +  P G++R+     +G+  +   L  F   YP+
Sbjct: 61  AGERYLASCRAILGEIASAERALLSEAHAPRGRVRVDLPGVIGRACVLPRLAAFEARYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L L ++  D+  +  DC IR  + +  SSL+ R+L  +     A+P YL+   EP 
Sbjct: 121 IELVLGLSDRPADLIHEGIDCVIRTGE-LADSSLVARRLGELAWITCASPRYLERHGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           SI  L +H ++ +  L        +W   VD       + S   VN   + +Q  + G G
Sbjct: 180 SIDALGEHRIVNY--LSNATGRPLDWRFRVDGEARAMTLPSRYAVNETEAYLQCALEGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +  +       +  L  ++ D+   S  V   YP+A  N   ++ F +++
Sbjct: 238 LIQISAFAAAAYLRSGRLREVLADLRCASVPVSIVYPQARVN-AAVRTFIDWV 289


>gi|167835170|ref|ZP_02462053.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 320

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   +  +   Y D+ +++ 
Sbjct: 67  ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAQRYADVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPTGMKSSSLVARQIATAHIVLVASPDYLAKHGTPATIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ I      P        ++ V      P    + VN    +    + G+GIALL  
Sbjct: 187 QHHSFI---RREPNETLIDAAISDVAAASRVPLSGNVIVNHLEGLRVAVLSGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V ++     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFLADR 294


>gi|157147653|ref|YP_001454972.1| hypothetical protein CKO_03456 [Citrobacter koseri ATCC BAA-895]
 gi|157084858|gb|ABV14536.1| hypothetical protein CKO_03456 [Citrobacter koseri ATCC BAA-895]
          Length = 308

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 134/298 (44%), Gaps = 10/298 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S     L  F  +   G  + AA QL++S S++S+ ++ +E  +G  L  R  R +TLT+
Sbjct: 4   SISLKHLEFFIKIVDCGGLSEAAAQLNVSPSAVSKSLAAMEDTLGTTLIKRTTRSITLTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L    +++ ++ + T          P G+LRI  +I  G + L   + ++   YPD
Sbjct: 64  AGQYLFNRATKLLNEFDETLNTTSGYYHSPQGELRITCSIAFGYSRLVNLVDKYRTQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + L++  ++++    D A+R+       +   RKLV I     A+P YL     P 
Sbjct: 124 VNLYIDLNDNFVNLNETDFDIALRISTA-PPQNYAMRKLVPIRWAWCASPGYLAKKGMPQ 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  H+ + +  L P               +  P    +Q NS L +++  +   G+
Sbjct: 183 RRVELVNHDCLVYPGLTPVLKVADEQERLHQLKLHMP----IQANSSLVLLKSVLEDQGV 238

Query: 242 ALLPDYIVKDNP---NLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LP Y++ D+     +  +M D  +   +  +Y  Y  +  +  K+++F +F+  + 
Sbjct: 239 AYLPTYLIGDHIQKEEITPLMLDGTITCETHALYALYFPSKYSNPKVRSFIDFLVAEL 296


>gi|126456629|ref|YP_001075061.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167849015|ref|ZP_02474523.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|126230397|gb|ABN93810.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
          Length = 336

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +   L  R  R L LT  G
Sbjct: 3   TLQNMRVFARVVEAGSFTAAAQSLNSTTGAMSRAVSELEARLRTHLMNRSTRRLALTPAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   ++  + E   +  +P+G LR+ +   +GQ+ +   L  +   +PD+ 
Sbjct: 63  ERYLLRCRQILADVDQAEEEASCAHERPAGVLRMHSFASIGQHYVLPALTAYRSQHPDVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  +  D+    +D A+     +  S L+   L +      A P YL+    P + 
Sbjct: 123 IELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHLLGSTFSILCATPAYLRAHAAPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +T         E    L   +          +Q N+  S+      G GI +
Sbjct: 183 RDLARHACLTLRTPAFPTNEWL--LEGPNGAEEIKVDGPVQTNTAESLAVAIRAGIGIGM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y   ++    NLVR++         VY  YP       K++ +   +
Sbjct: 241 LPLYAAIEDLRCGNLVRVLPAHRLQKMNVYALYPSRRFIDAKVRTWVEAL 290


>gi|330973145|gb|EGH73211.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 304

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 11/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D L VF  VAR  SF  AA++L +S + +S++I  LE  +G+ L +R  R +++TE G
Sbjct: 6   SLDDLNVFVHVARRSSFVGAADELGMSAAYVSKRIRLLEQGMGVVLLHRSTRQVSITEDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +++     +   ++    E+     +PSG LR+ ++   G+  +   L E    YP + 
Sbjct: 66  ERVYEWARGMLDSVQQMGEEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAARYPKLD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YL     PL++
Sbjct: 126 IRLDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPGYLNVHGTPLNL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+ +   +           L              L  N      Q+C+ G G+ L
Sbjct: 185 GELANHDCLVIKERDRPFGIWH--LNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVLL 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              + V+       LV+++ D    +  ++  +   L ++ K++    F+    RD+
Sbjct: 243 RSLWDVRTDLAEGRLVQVLPDYRQDA-DIWAVHTSPLMSSAKVRVTVEFL----RDY 294


>gi|120598053|ref|YP_962627.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120558146|gb|ABM24073.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
          Length = 313

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 120/308 (38%), Gaps = 19/308 (6%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT 
Sbjct: 1   MDRLEAAKVFVTIVERGSMISAANALDMSRSMVTRYLSEMEDWSGARLLHRSTRSLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +                 P G LRI+ +  +   +L   ++++L  YP 
Sbjct: 61  AGEQVLDYCHRLLELANEVPAVSHAGVTIPRGLLRISCSQFMAHQILAPVVRQYLASYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             +   + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      L
Sbjct: 121 ASVNFHVSSQTVDLVAERIDLAIRITNEL-DPNLIARRLGECESVVCAAPSYLAARAAVL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--------------DRPIGEPRISCLQVNS 227
             ++L +HN +T+          +                     +    P       N 
Sbjct: 180 HPEDLTQHNCLTYSYFGDVMWRFYQTDVGAKQAQALNPESKLNQGQAFNVPVNGNFSAND 239

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y         L+
Sbjct: 240 SMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVYQSRKHMQPALR 299

Query: 285 AFRNFIFL 292
              + +  
Sbjct: 300 VMMDMLVA 307


>gi|262043902|ref|ZP_06016990.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330013282|ref|ZP_08307603.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|259038756|gb|EEW39939.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533553|gb|EGF60274.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 302

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 133/295 (45%), Gaps = 5/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  V  SG+F  AA  LH+++S++ + I+ LE  +G+ LF R  R   LT
Sbjct: 1   MRDDLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G + +    E   ++   +  LQ    +  G+LR++  +  GQ  +   L      YP
Sbjct: 61  EEGEQFYLQCREALERIREAEETLQRGKDEVQGRLRVSLPVLFGQRCVAPLLFRLSQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +++  +  D A+R+     + SL  R L    M   AA  YL+    P
Sbjct: 121 LLKLELHYSDRQVNLLEEGFDLAVRIGSLADTGSLRARALGEHGMVLCAAAEYLRQQPAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I  L++H  + +  L    ++ +         +     + L  + + +I      G G
Sbjct: 181 QTIAGLNEHRTLGY--LHNGQLQKWQLYDPQQGEVRFSPQTWLIQDDFAAIAAAVQQGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA LPD++V     +  L +++       F ++  +PE      K +A  + +  
Sbjct: 239 IAWLPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEGPWLPQKTRAAIDALRE 293


>gi|330949858|gb|EGH50118.1| LysR family transcriptional regulator [Pseudomonas syringae Cit 7]
          Length = 302

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 138/297 (46%), Gaps = 9/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA +GSFT AAE+L+L+ S++S+ ++ LE+ +G++LF R  R L LTE+G+
Sbjct: 7   LKGIETFVAVANAGSFTAAAERLNLTNSAVSKSVARLESRLGMRLFERTTRSLALTEEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H V   +   LE  +  L     +P+G+LRI      G+      +  F   +  ++ 
Sbjct: 67  AYHTVCVRMLADLEAAETALAAQRTEPAGQLRIDLPATFGRLHALPLILAFTGQHHKLRP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   ++ +DI  +  D A+R+  P +  + +  R L T  +   AAP YL+    P + 
Sbjct: 127 RITFTDRFVDILEEGIDLAVRIGGPRVWPAGVAHRYLGTERVIFCAAPAYLQRYGTPHTF 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           ++L  H  I FG           WL   ++   E R   + L + +  + +       GI
Sbjct: 187 EDLASHACILFGRGDGSTSP---WLFVDEQGQREARAVEARLVIGNAEAQVAAVTSAWGI 243

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L  +++++      LV I+  + T    ++  +P   ++  K++     +    R
Sbjct: 244 AQLATWLIREQLQRGELVEILPQLATDGLALHLAWPRNRESLPKVQVLVERLSEALR 300


>gi|319781980|ref|YP_004141456.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167868|gb|ADV11406.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 297

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 140/298 (46%), Gaps = 7/298 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + ++L  F  V  +GSFT AAE+L ++++ +S+Q++ LE E+   L  R  R +  TE
Sbjct: 4   SINLNRLAYFATVVDAGSFTRAAERLGITKTVVSQQVARLEAELRTTLLVRTTRRVEPTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  LH     +   +E    E+ E++ + +G LR++ + D G  +L      F   +P 
Sbjct: 64  AGRLLHARCVLILRDVEEAVAEVGEANAEVAGVLRVSASNDYGAIVLAPIAARFRQRFPA 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L++ +  ID+  +  D +IR+   +  SS   R++ T      A+  +    R   
Sbjct: 124 CGVELVISDAIIDLIGNKIDLSIRVGW-LDDSSQQARRIGTFRQILVASRDFAAGIRV-D 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L    L+   + + +    +N+      P          +NS  ++++  + G G+
Sbjct: 182 KPEDLSSLPLV--ANAVLRKPFTWNFTRGDSEPRTITLREAFSINSTPAVLEATLAGGGL 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+LPDY+V +      LV ++ D   PS  ++  YP A     K+  F + +    RD
Sbjct: 240 AVLPDYLVVNYLSQGRLVHVLPDWALPSGGIHVVYPAARFRPQKVTQFVSMLTEHIRD 297


>gi|260775796|ref|ZP_05884692.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608212|gb|EEX34381.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 317

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 126/297 (42%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F      GSF  AA++     S++S+ +  LE+E+GI+LF R  R L LT 
Sbjct: 1   MDKIRTLRFFVATLERGSFAAAAKKYGTDPSTVSKALHRLESELGIQLFQRSTRQLNLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  R    V  +L   +  LQ+S+  PSG L++   +  G+  +Q  L  F  LYP+
Sbjct: 61  AGHQYARTARLVLDELSACEEALQQSNRLPSGTLKVNLPVSYGRRYIQPLLANFRQLYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++  D+  +D+     D +IR    +Q S LI R+L  I     A+  YL     P 
Sbjct: 121 IALEIQFDDAYLDMIEHGIDVSIRSGS-VQDSQLIARQLSPIDYLICASHDYLNQHGAPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E   H+ I F       +     LA  D          + VN   S+ + C  G G+
Sbjct: 180 GPHEFHHHSWIRFRFKQTGRLLGLK-LAPSDEAKLPDIAQNMVVNDGESMAELCAQGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P +I +D      +  +          VY  Y        ++K F +F+    +
Sbjct: 239 TQIPHFIARDWIKAGEITPLFPSFRPRDEGVYILYHRREHVPLRVKLFVDFVIESIQ 295


>gi|221199292|ref|ZP_03572336.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
 gi|221205806|ref|ZP_03578821.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221174644|gb|EEE07076.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221180577|gb|EEE12980.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
          Length = 309

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  VA  GSF  AA  L + ++++S  +  LE  +G +L +R  R + LT 
Sbjct: 1   MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLEAALGTRLLHRTTRQVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  + +      +       G+L +     + + ++   L      +P 
Sbjct: 61  DGTVLLERGRRLLAEADELDRLFRRRDRDVIGRLNVDVPSRIARRVIAPALPALFRRHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+    P 
Sbjct: 121 LQLSLGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFALINCASPDYLREHGVPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               L   H  I +         D+ +     R       S + VN+  + +  C+ G G
Sbjct: 180 HPDALAHGHWAIGYASPTTGREVDWEYGTDAGRHTLT-LPSRVVVNNAETYIASCIAGMG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +P + V    ++ +LV +M         V   YP     + +L AF  +
Sbjct: 239 LIQIPRFDVAHLLESGSLVEVMRAHRPAPMDVSAVYPHRRHRSRRLNAFVEW 290


>gi|86139200|ref|ZP_01057770.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85824044|gb|EAQ44249.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 314

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 129/298 (43%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRVSPAVTSARISQLEDYLGVRLFQRTTRNLTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++  + ++   +  P G L +A  + +G+ L+  ++  FL  YP
Sbjct: 60  EQGQAFYSGAVSVLEAVDQAEAQVMHLTDTPRGTLFVAAPLGVGRRLVAPDVPSFLADYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I+L L ++ +D++ +  D A  L +P   S+L  RK+        AAP Y+     P
Sbjct: 120 QINIRLRLSDRTVDLTTEGLDLAFFLGQP-ADSNLRIRKIAECQRVLCAAPDYISRHGAP 178

Query: 181 LSIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              ++L    HN +      P   E    L +   P         + +    +  + + G
Sbjct: 179 ACGEDLVNGAHNCLNL--RYPGASEFQWMLQSEQGPKRYAVSGRYECDDGDVLTDWALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIAL P + V ++     LV + +        +   Y        K + F +F+  +
Sbjct: 237 EGIALKPVFEVAEHLTSGALVAVAQQTPPVPVQMACLYTHRRHQDPKTRLFMDFMTQR 294


>gi|332285762|ref|YP_004417673.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330429715|gb|AEC21049.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 321

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 9/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   G F  AA  L +S   ++R ++ LE  +G +L  R  R L+LT+ G    
Sbjct: 7   MRVFERVVDEGGFAAAARALDMSAPVVTRLVADLEEHLGTRLLQRSTRSLSLTDAGQTYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP--DIQIQ 125
                +   ++      +  + +  G LR+ +   L   +L   L EF   YP  DI ++
Sbjct: 67  NRVRNILQDIDEADAVTRSQTNELEGLLRVHSPPVLASYVLAPMLAEFRRRYPKIDIDVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++     ++  D  +       +  ++ RK++   +   A+P YL++   P + +E
Sbjct: 127 VETTSRPP---LEGFDITLMGTDESFNDEVVARKVIEAEVILVASPAYLQSRGTPQTPEE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  +       +      W  T  D+P        +  N   ++++  + G+GI  +
Sbjct: 184 LSDHECLRLRQSNSRSSAWRMWRVTEPDKPKEVAVTPMIAANHTDTLLRATLDGAGITSV 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              IV        LVR++   IT    +Y   P       +   F +F+  + R
Sbjct: 244 SMDIVAPYLTRGELVRVLSPWITGRLAMYAALPSRKFIPQRTHVFLDFLVEQTR 297


>gi|78060005|ref|YP_366580.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964555|gb|ABB05936.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 303

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 129/295 (43%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +   V  +GS + AA QL +  +++SR+I+ LE+ +  +L +R  R L+LTE G 
Sbjct: 4   LESMSLLVAVIDAGSMSAAARQLGIPLATVSRKIADLESYLNTRLLHRTTRQLSLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   +  T+         P G+L +   I  G+  +   L  FL  YP+I +
Sbjct: 64  SYVAGCRRILDDIAETERAATGEYAAPRGELIVTAPIVFGRLHIVPVLAAFLAHYPEIDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L ++   +  +  D A+R+ + +  SS +  ++ ++     A+P YL     P    
Sbjct: 124 RLVLTDRVTHLMEEQIDVALRIGE-LPDSSFMATRVGSVRRVICASPAYLAAHGTPTEPT 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  ITF  L  +    F         +  P  S   VN+  + +   VLG G+  +
Sbjct: 183 DLARHQCITFEVLASRRAWVFGGEK---GELTVPVHSRFAVNTAEAAIDAAVLGVGLIRV 239

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             Y V        L  +++   +    V   +        KL+AF +F+  + R+
Sbjct: 240 LSYQVAQALRDRTLDVVLDAFESQPLPVSLVHKGQAPMPLKLRAFLDFVAPRLRE 294


>gi|170698461|ref|ZP_02889533.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136632|gb|EDT04888.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 302

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 121/275 (44%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 87  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L        AAP YL     P +  EL +HN I    GD      
Sbjct: 147 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGTPGTPHELTRHNCIGIRQGDEGYGIW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
                               L  N     +++ + G GI +  ++ ++D   +  LV ++
Sbjct: 206 RLTGGRGAARNTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADGRLVVVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D  TP+  +Y  Y +  + + +++AF +++  + 
Sbjct: 266 PDYETPAADIYAVYAQRHQMSARIRAFVDYLAGEL 300


>gi|172063492|ref|YP_001811143.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996009|gb|ACB66927.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 300

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 128/300 (42%), Gaps = 7/300 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+D +R+F  V   GSFT A+ QL +  S +SR++  LE ++G++L YR  R +++TE 
Sbjct: 1   MDFDSIRIFLRVVERGSFTAASVQLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEG 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     + +     P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYERCLRAEEILLDADRQARALRTDPEGTLRVLVPYSIGLFELEPALAEFHRRYPRV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  S  + R L   H    A+P YL+    P +
Sbjct: 121 QLVLIYDNSPLDLVEHGFDVALRAGM-LTDSGYVARSLGWSHAKLAASPAYLERAGRPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +H+++  G   P                  P    L  N  +++++    G GIA
Sbjct: 180 PHELAQHDILYVGRDAPGLT--LRLTNAAGDVADVPIRPVLISNESITVLRQAASGGGIA 237

Query: 243 LLPDYIVKDNP---NLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           L+  + +        L  ++ D   T    ++  YP       K++ F  F+      W+
Sbjct: 238 LISTHYIARRLEKNELEIVLPDWHRTDDVELHALYPRRATLDSKVRIFVEFLTEVFTGWR 297


>gi|161506079|ref|YP_001573191.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867426|gb|ABX24049.1| hypothetical protein SARI_04266 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 303

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 128/286 (44%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLAQYGAPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +     +   +F  +A                N  ++++++   G+GIA +P  
Sbjct: 180 SHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGTGIAYVPLM 236

Query: 248 IVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V D      L  ++    +    VY  Y E  K   K++   N +
Sbjct: 237 WVIDEINRSELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINAL 282


>gi|331016471|gb|EGH96527.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 307

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 126/297 (42%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  ++SR+++ LE ++G++L +R  R ++LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAVSRRLAALENDLGVRLGHRTTRSVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    E  +  L+  +   SG LR+      GQ ++   L E +L  P +
Sbjct: 61  GEVFLPHAKTMLQASEAARATLKADAGTASGILRVTAPSVFGQTVIMPLLPELMLENPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL     P  
Sbjct: 121 SIDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCASPDYLVRRGTPTV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H  I    +                P+          NS  ++      G G+A
Sbjct: 180 LDDLRHHPCIALHGMPYWS------FTRGGEPVTIRAQGSFSANSVEAVRTASKQGLGLA 233

Query: 243 LLPDYIVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +L  + ++      +L +I  ED +    ++    P   +   +++ F + +  + +
Sbjct: 234 MLTYWDIQQEIREGSLRQIDFEDALPEQLSITAVLPTRQRVPHRVRLFVDRLEAELQ 290


>gi|325928945|ref|ZP_08190106.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325540634|gb|EGD12215.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 307

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 131/296 (44%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G F  AAE L +  +++S+ IS LE  +G+ L  R  R + ++ 
Sbjct: 1   MDHLQAIRAFARVVETGGFNRAAESLQMPNATLSKSISALEKHLGVTLLERSTRRVRVSN 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  +L+  +  L  +   P G+LR+ T       LL   L EF   YPD
Sbjct: 61  DGAAYYARVRHLLTELDDVEATLGRAQGSPKGRLRVDTGGSTACGLLIPALPEFCARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+QL + ++ +D+  +  DCAIR        +LI RK+ ++     A+P YL     P 
Sbjct: 121 IQLQLGVTDRTVDVIGENIDCAIR--STADDGALISRKIGSLAWTTCASPDYLARYGVPT 178

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             ++L      ++ +           ++L         P  S + VN   + +   + G 
Sbjct: 179 HPEQLKSPAFPVVGYFSAHSGKAPPLHFLDDGAPLEIVPNCSVM-VNESNAHLATGLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+    D++V+   +   LV +++D       V+  Y  + + + K++ F  ++  
Sbjct: 238 GLIHTLDFMVRPAIERGALVPVLQDWRPAPLDVFIAYAPSRQLSTKVRVFIEWVSE 293


>gi|271499194|ref|YP_003332219.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342749|gb|ACZ75514.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 300

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 133/288 (46%), Gaps = 5/288 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             +RVF  +  + SF+ AAE+L L ++++S+ +  LE  +G++L  R  R + +T++G  
Sbjct: 5   QAMRVFVRIVEAESFSRAAEKLGLPRATVSQTLKRLEVRLGVRLLQRTTRQVQVTDEGLL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++  +L+ T         +PSG++RI     L + ++  +L  F   YP I + 
Sbjct: 65  YYQRCVQLLAELDETDALFSHQRQQPSGRVRIDMPHSLARQVVIPSLPAFYRRYPQISLV 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  ++  I++  +  DC +R  + +   SL+ R L ++     A+  Y      P S++ 
Sbjct: 125 LSANDAAINVLREGVDCVLRAWQ-VDDDSLVARSLPSLPQVTCASAAYCAEFGVPDSLEA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H ++ +  L         ++    + +     S ++++   + +  C  G GI   P
Sbjct: 184 LATHRMVGYFSLRTLQRYPLEFMQQ-GQLVTRTLPSLVEISGADAYIAACQAGMGIIQAP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y ++       L+ I+  +  P   +Y  YP       +++A  +++
Sbjct: 243 RYGLESLLSGGELIEILPQLPPPDMPLYVMYPSGRFLAPRIRAVIDWL 290


>gi|161523992|ref|YP_001579004.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351247|ref|YP_001946875.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341421|gb|ABX14507.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335269|dbj|BAG44339.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 309

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  VA  GSF  AA  L + ++++S  +  LE  +G +L +R  R + LT 
Sbjct: 1   MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLEAALGTRLLHRTTRQVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  + +      +       G+L +     + + ++   L      +P 
Sbjct: 61  DGTVLLERGRRLLAEADELDRLFRRRDRDVIGRLNVDVPSRIARRVIAPALPALFRRHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+    P 
Sbjct: 121 LQLSLGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFALINCASPDYLREHGVPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               L   H  I +         D+ ++    R       S + VN+  + +  C+ G G
Sbjct: 180 HPDALAHGHWAIGYASPTTGRELDWEYVTDAGRHTLT-LPSRVVVNNAETYIASCIAGMG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +P + V    ++  LV +M         V   YP     + +L AF  +
Sbjct: 239 LIQIPRFDVAHLLESGALVEVMRAHRPAPMDVSAVYPHRRHRSRRLNAFVEW 290


>gi|77458645|ref|YP_348151.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382648|gb|ABA74161.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 334

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 125/293 (42%), Gaps = 5/293 (1%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D +  +R F  VA+SGSFT AAE    + +++S+ IS LE  +  +L  R  R L LT
Sbjct: 23  PMDVFQSMRFFIAVAQSGSFTAAAEMPDTNTTNVSKAISALEARLHTRLINRTTRRLALT 82

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   +     E   +   P G+L+I T   +G + +   +  +  ++P
Sbjct: 83  EAGVRYLERCEKILDDVREADEEAGTAQTLPVGRLKIHTMSAIGNHYVIDAIARYRDIHP 142

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   L L N+  D+  +  D +I L + +  S  + ++L   +    A+P Y+     P
Sbjct: 143 TVMFDLTLTNRVPDLLEEGFDMSIVLARDLPDSGFVAQRLGITYSILCASPAYVAKRGLP 202

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL +H  +   + +   +E++ +            +S   +N+   +      G G
Sbjct: 203 QTPGELCEHECLRIVNTVMP-VENWTFEGPEGMETISIPVSPFHINTADGMTIAIRKGMG 261

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I + P     D      LVR++ +       ++  YP       K+K +  F+
Sbjct: 262 IGIQPIASAVDGLRAGTLVRVLPEYRLEELNLFAIYPSRKFVDAKIKTWVEFL 314


>gi|332286242|ref|YP_004418153.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330430195|gb|AEC21529.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 305

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 119/293 (40%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LR F ++A  GSF  AA    ++   + R+++ LE  +G++L +R  RGLTLT+
Sbjct: 1   MDRYTALRSFALIAEKGSFAAAALIEGVTPVVMGRRLTALERRLGVQLMHRSTRGLTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++    +  +  +        G L +A     G+  +  +   F   +P+
Sbjct: 61  LGEQFLESCQQLLQDFDAAEDNISIGRHSVRGHLAVAAPAAFGRKHVAPHAAAFRAKHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +   L +   D+  +  D AIR+ + +   + +   L          P Y      P 
Sbjct: 121 LHLSFNLTDSVEDLVREGYDMAIRVGE-VTDPNYVALHLFPNRRVVCGTPGYFDQHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             ++L +HN + F     +  +   W+   +      R+   L  N    +  +     G
Sbjct: 180 IPEDLARHNCLAFNL---QGGQQRGWVFVRNGKPFAVRVEGDLSCNDGELLHGWVKQSLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I     + ++ +     L+ +++D   P + +   YP+      K++ F +++
Sbjct: 237 IGWRSTWEIQADLKQGALMTVLDDFALPDYDIQAVYPQQRYLPAKVRHFIDYL 289


>gi|163855507|ref|YP_001629805.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163259235|emb|CAP41535.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 300

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 142/302 (47%), Gaps = 12/302 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D D+LR   +F  VAR G+F  A+E L +  S++SR+IS  E  + +KLF+R  R  
Sbjct: 1   MNRDIDRLRDMALFAEVAREGTFVKASETLGVPVSTLSRRISEFEKGINVKLFHRSTRKT 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLTE G++ ++   ++  ++     EL   +  P G+LR++   D G  L   +  E   
Sbjct: 61  TLTEVGARYYQQIDDILQQVRHVNDELDSETSTPGGQLRVSMPADFGAYLADVHFDELRA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I  +  L + ++D+ +   D +I +  P  +S LI R++ T+H H Y+AP YL+  
Sbjct: 121 AYPSITYEFFLTSDEVDLMVGRYDVSILIGDPPSASRLIARRIGTVHRHLYSAPEYLERH 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
           R P   ++L+ H  +      P       WL      +     S  L +NS   I Q  +
Sbjct: 181 RVPAKPEQLNSHTCL----FPPPVESGGGWLMRNGPEVIHVNPSPLLMINSQAVIRQLVM 236

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI  L            +LV ++ +      ++Y      L    +++AF +F+   
Sbjct: 237 HGIGIGQLSRSYAAALVRTGSLVAVLPEWELDPQSLYVLTASRL-LPARVRAFVDFLAET 295

Query: 294 AR 295
            R
Sbjct: 296 FR 297


>gi|126175365|ref|YP_001051514.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125998570|gb|ABN62645.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 314

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 121/308 (39%), Gaps = 19/308 (6%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +  +VF  +   GS   AA  L +S+S ++R +S +E   G +L +R  R L+LT 
Sbjct: 1   MDRLEAAKVFVTIVERGSMVSAANALDMSRSMVTRYLSEMEEWSGARLLHRSTRSLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +             +   P G LRI+ +  L   +L   ++++L  YP 
Sbjct: 61  AGEQVLDYCHRLLELANEVPAVSHAAVAIPRGLLRISCSQFLAHQILAPVVRQYLASYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             +   + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL      L
Sbjct: 121 ASVNFHVSSQTVDLVAERIDLAIRITNEL-DPNLIARRLGECESVVCAAPSYLAARAAVL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--------------DRPIGEPRISCLQVNS 227
             ++L +HN +T+          +                     +    P       N 
Sbjct: 180 HPEDLTQHNCLTYSYFGDVMWRFYQADVAAKQAQALNSDPKLNQGQAFNVPVNGNFSAND 239

Query: 228 YLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
            + ++   + G GIA+ P +  K   D+  LV ++ + +  S  VY  Y         L+
Sbjct: 240 SMVVLNATLAGEGIAMQPLWAAKPYLDSGQLVPLLTEFMPQSLGVYGVYQSRKHMQPALR 299

Query: 285 AFRNFIFL 292
              + +  
Sbjct: 300 VMMDMLVA 307


>gi|116053902|ref|YP_788339.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115589123|gb|ABJ15138.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 311

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 122/299 (40%), Gaps = 3/299 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               ++ F   A +GSF  AA +L L+ + + + ++ LE+ +G++LF R  R LTLTE G
Sbjct: 3   TLSNIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +        ++T    +     +PSG L+++  +  G++ +   L EFL  YPDI 
Sbjct: 63  ERFLQEVGGSLEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+  +  D AI     +    ++ R L   H+   A+P YL++       
Sbjct: 123 PDWHFDNRQVDLIGEGFDAAIGGGFELPPPGVVARNLTPGHLILLASPAYLRDKPPIRHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I         +  +                 + ++   +  +   +G GI L
Sbjct: 183 GDLGGFDGIRIRSPQTGRVRSWPLRRRNGEEAPIELRERMTMSDPEATCEVAAMGLGITL 242

Query: 244 L---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +     Y   ++  LVR++ D    +      Y        K + F +F+    R    
Sbjct: 243 VCMQHAYAYLESGALVRVLPDWYVDAGNTSLYYAANKLLPAKTRVFVDFVVDYFRRQDL 301


>gi|307730281|ref|YP_003907505.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584816|gb|ADN58214.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 328

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 129/299 (43%), Gaps = 9/299 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+ 
Sbjct: 61  ALTEAGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTISQTILSTILPEFMH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ +D+  D  D A+R+R  P ++++++ R L         AP  L+ 
Sbjct: 121 RYPEVRVVMRVTNRVVDLFEDSIDVALRVRSAPPENANIVVRPLWRTQQMLVGAPSLLQQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L +    T           +N +A             L      +I +  +
Sbjct: 181 NAPPLQPTDLAR--FATLDVPTSDGRHVYNLIAPDGSRHVHEHEPRLVTADLSTIREAVL 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G GIA LP+ +         L  +M     P+  +Y  +         ++AF +++  
Sbjct: 239 CGVGIAALPEMMYGAPLRAGQLSPVMPGWTFPAPQLYAVFVSRQGMVPAVRAFVDYLVE 297


>gi|217975299|ref|YP_002360050.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217500434|gb|ACK48627.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 318

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 130/294 (44%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA+ GSFT AA+ L ++ S++S+ I  LET +G KL +R  R ++LT  G   
Sbjct: 20  EIRHFVTVAQLGSFTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSY 79

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     L+  Q  L      PSG++R+   +  G+  +   L      YP +++ +
Sbjct: 80  LTDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLSLSQKYPKLELSI 139

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++  D+  D  D A+R+ +   +  L+ R+L        A+P Y      P    +L
Sbjct: 140 TFNDRATDLFSDGIDLAVRVGQLGDTVDLVARRLGEQRRVICASPAYFARLGTPQGKADL 199

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I    +     +   WL   +  I E        ++    +I+   + G G+A +
Sbjct: 200 SQHQCI----VGWPLGQQHRWLLKNEDGIIEAYDIPVRHEIADCEAILAATLAGVGLAQV 255

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P ++V+D      L+ +++++ +    ++  + +      KL+     +   A+
Sbjct: 256 PIWLVEDYLKTGELISVLDELASDDTPIHLIWLKTPYLQPKLRVIIEELAELAK 309


>gi|238787630|ref|ZP_04631428.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC
           33641]
 gi|238724417|gb|EEQ16059.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC
           33641]
          Length = 299

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 130/302 (43%), Gaps = 11/302 (3%)

Query: 1   MSFDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D    L  F   A++ +F+ AA QL ++ ++IS+ I  LE  + ++LF R+   +
Sbjct: 1   MSLPFDIHRLLPAFLSAAQNENFSAAARQLGVTPAAISKNIRVLEERLAVRLFQRNTHSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT++G  L    + ++  L  T    +     PSG +R++     G+ LL   +  F+ 
Sbjct: 61  MLTDEGKVLLARVAPLWQALSQTLDAARHDEQHPSGTVRVSLIPGFGRQLLMPLIPAFMA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I + L L+ + +++  +  D  I        S LI R+   + M   A P YL   
Sbjct: 121 RYPLIDLDLSLEPRVVNLVGEGFDVGIG-THIDPDSRLIARQFYPMQMVLAATPAYLARY 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCV 236
             P +  +L +H  +   +  P       WL   +  +    +S  L ++    ++   +
Sbjct: 180 GSPSTPPDLHQHQCLLHRN--PSTGRIVKWLLQHNNEVQSLELSGRLVISQPEILLSAAL 237

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              GI  +  +  +    + +LV ++ +       ++  Y  A     +++ + +F+   
Sbjct: 238 ADMGITYVAQWHAEPHFADGSLVPVLTNYWPAPVPLWLYYASAD-LPPRVRVWVDFLLEH 296

Query: 294 AR 295
            R
Sbjct: 297 FR 298


>gi|300715217|ref|YP_003740020.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299061053|emb|CAX58160.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 316

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 135/291 (46%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D L VF  VAR+G F  AA++L LS S+IS++I+ LE ++ I+LF+R+ R + LT +G
Sbjct: 19  SIDDLSVFVTVARNGGFARAAQELGLSPSTISKRIAMLEKQLDIRLFFRNNRSMRLTAEG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   ++   +     +L       +G + ++ +   G   +   L + + L+  + 
Sbjct: 79  EIALEGAMQIVSGVGDFVSDLNGLRGAVTGNITLSCSFGFGHEYMADALSDLMNLHNGLN 138

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L ++++++  +  D  I +   I     I R+L        A+P YL+    P S+
Sbjct: 139 VKLMLSDREVNLVDEGIDIEIHVGDEIND-LYIARQLAANRRILCASPDYLRQAGVPTSL 197

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L +H+ +   +   +     NW  T        R+ S    NS   ++ + + G GI 
Sbjct: 198 DDLRQHDCLIIQE---RSAAFGNWALTNGEDSIVCRVNSQHSSNSGSVVLAWALRGQGIV 254

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   + V  +     LV+I+      +  ++  Y +   ++ ++K   +F+
Sbjct: 255 LRSAWDVAKHLASGELVQILPAWYQQA-NIWAVYTQRSSHSLRIKTCIDFL 304


>gi|114799792|ref|YP_760089.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114739966|gb|ABI78091.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 300

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L VF  +A  GSF+ A  +L LS S+ISR +  +E  +G++L  R  R LTLT +G  
Sbjct: 13  RALEVFAAIASEGSFSAAGRRLDLSASAISRTVDRIEERLGVRLILRSTRALTLTAEGQA 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   L+  +  + +    P G+LR++  +  G+  +   L +F +LYP I + 
Sbjct: 73  YLSAARRILTDLDEAEQSIADQGA-PRGRLRVSAALAHGRLCIVPLLGQFSVLYPHILVD 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +DI+    D AIR   P+  S L+ RKL        A+P Y+     P   ++
Sbjct: 132 ISLTDNVVDIAAGETDVAIRFG-PLADSPLMARKLGESGRVIVASPDYIARNGAPEMPED 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN ++F     + +  F       R         ++ N+  ++ Q    G GIA + 
Sbjct: 191 LYRHNCLSFNFRRAEPVWPFR---KDGRDYALNVRGSIEANNGETLGQLAADGIGIARVG 247

Query: 246 DYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
            + V  +     LV ++E         ++  +        +++AF  F+  
Sbjct: 248 TFSVAADMAAGTLVPLLEGYNPGDIEEIHAVFAGGPNTPARVRAFVEFLAE 298


>gi|332186152|ref|ZP_08387898.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
 gi|332013967|gb|EGI56026.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
          Length = 305

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 122/293 (41%), Gaps = 9/293 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L +F  V   GSF+ A   L L+ S+++R I  +E  +G++L  R  R LTLT +G  
Sbjct: 13  RSLALFASVVEEGSFSAAGRTLGLTPSAVARAIDRIEARLGVRLLLRSTRALTLTAEGQA 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   L+  + ++ +    P G+LRI+  +  G+  +   L +F   YP I I 
Sbjct: 73  YLLAARRILADLDDAEQQIADQGA-PRGRLRISAALAHGRLCVVPLLGDFARAYPHILID 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L +  +DI+    D AIR   P+  S L  RKL        A+P YL     P   ++
Sbjct: 132 IALTDTLVDIAAGQVDVAIRFG-PLADSGLTARKLSEARRVIVASPDYLARAGTPRVPED 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F     + +  F       +         +  N+  ++      G GI  + 
Sbjct: 191 LHAHNCLNFNFRRAEPIWPFR---RDGKDFALSVEGGIVANNGETLGHLAAAGVGITRVG 247

Query: 246 DYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKA 294
            + V     +  LV ++ED        ++  +        +++ F +F+  + 
Sbjct: 248 RFSVAAEIADGRLVPLLEDYNPGDVELIHAVFVGGATTPARVRVFVDFLVERL 300


>gi|330819736|ref|YP_004348598.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327371731|gb|AEA63086.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 307

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 135/293 (46%), Gaps = 8/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D LR+F  VA   SFT AAE L + +   S  +  LE E+G +L +R  R + LTE G
Sbjct: 3   NLDALRIFVRVAEMASFTRAAESLGIQKGRASNTVRALEAEIGARLLHRSTRTVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
              ++   ++    E  Q         P  G+LR+    ++ +++L   L  F+ ++P++
Sbjct: 63  HAFYQRAQDLLADAEALQSMFTSEHDVPLRGRLRVDLPSEIARSVLVPALPGFIAMHPEL 122

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++   ++ +D+  +  DC +R+   I   SL+ R+L ++ M   A+P YL     P +
Sbjct: 123 ALEVSSTDRRVDLIQEGIDCVLRIGG-IVDESLVARRLGSLRMVNAASPEYLARHGVPRN 181

Query: 183 IQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++EL    H L+ +          ++++    RP        L VNS  +     + G G
Sbjct: 182 LRELATQGHRLVNYTMSFANRPTVWDYIER-GRPATLALPCALSVNSVQTYHAAGLAGIG 240

Query: 241 IALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     +      ++  LV ++ +    S  V+F        + +++AF ++I
Sbjct: 241 LIQASRWRLLSYLESGELVEVLPEYRPASLPVWFVVAHRRNLSRRVRAFMDWI 293


>gi|108809996|ref|YP_653912.1| LysR family transcriptional regulator [Yersinia pestis Antiqua]
 gi|108813551|ref|YP_649318.1| LysR family transcriptional regulator [Yersinia pestis Nepal516]
 gi|145600941|ref|YP_001165017.1| LysR family transcriptional regulator [Yersinia pestis Pestoides F]
 gi|153949296|ref|YP_001402762.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418594|ref|YP_001605225.1| LysR family substrate-binding transcriptional regulator [Yersinia
           pestis Angola]
 gi|165926702|ref|ZP_02222534.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165936460|ref|ZP_02225028.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010545|ref|ZP_02231443.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213891|ref|ZP_02239926.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167402189|ref|ZP_02307662.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167419062|ref|ZP_02310815.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426175|ref|ZP_02317928.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167467566|ref|ZP_02332270.1| substrate-binding transcriptional regulator, LysR family protein
           [Yersinia pestis FV-1]
 gi|170026109|ref|YP_001722614.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|294502347|ref|YP_003566409.1| LysR-family transcriptional regulator [Yersinia pestis Z176003]
 gi|108777199|gb|ABG19718.1| LysR-family transcriptional regulator [Yersinia pestis Nepal516]
 gi|108781909|gb|ABG15967.1| putative LysR-family transcriptional regulator [Yersinia pestis
           Antiqua]
 gi|145212637|gb|ABP42044.1| LysR-family transcriptional regulator [Yersinia pestis Pestoides F]
 gi|152960791|gb|ABS48252.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351409|gb|ABX85357.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis Angola]
 gi|165915576|gb|EDR34185.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165921325|gb|EDR38549.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990635|gb|EDR42936.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204866|gb|EDR49346.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166963056|gb|EDR59077.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167048370|gb|EDR59778.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054886|gb|EDR64688.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169752643|gb|ACA70161.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
 gi|262360428|gb|ACY57149.1| LysR-family transcriptional regulator [Yersinia pestis D106004]
 gi|262364377|gb|ACY60934.1| LysR-family transcriptional regulator [Yersinia pestis D182038]
 gi|294352806|gb|ADE63147.1| LysR-family transcriptional regulator [Yersinia pestis Z176003]
          Length = 327

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 139/295 (47%), Gaps = 10/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L  F  +    S + AA +L+++ SS SR ++ LE ++G+ L  R  R + LT+ G 
Sbjct: 20  YKHLENFIKIVECNSLSIAAHKLNITPSSTSRSLAQLEEKLGVVLLKRTTRSIVLTDAGD 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L     ++   L+ T +        P G+L+I  +I  G   L     ++     D+ +
Sbjct: 80  YLFHQARQLLLDLDETLVNTHSFYNHPQGQLKITCSIAFGVCHLMHLFSQYKETNSDVCL 139

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L+++ ++++ ++ D A+R+   I   +   R++ TI+     +  YL     P +I+
Sbjct: 140 SVDLNDQLVNLNEEHFDIALRITS-IPPPNFAIRRICTINWVYCGSKEYLMKRGVPATIE 198

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H+ +    + P   + + + +T    +     + +Q NS L ++   +   GI  L
Sbjct: 199 DLEQHDCL----VNPNVSDAWLYKSTEGESVPLKIKNTVQANSSLGLLHAALHHQGIVCL 254

Query: 245 PDYIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P Y++ D   +  LV I+ D       + +Y  Y  +  N  K+++F +F+  + 
Sbjct: 255 PTYMLGDYITSGKLVPILLDYNAKDKEYGLYALYYPSKYNDPKIRSFIDFMLDEL 309


>gi|22124450|ref|NP_667873.1| hypothetical protein y0536 [Yersinia pestis KIM 10]
 gi|45440286|ref|NP_991825.1| LysR family transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594688|ref|YP_068879.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 32953]
 gi|150260675|ref|ZP_01917403.1| putative LysR-family transcriptional regulator [Yersinia pestis
           CA88-4125]
 gi|218927483|ref|YP_002345358.1| putative LysR family transcriptional regulator [Yersinia pestis
           CO92]
 gi|229836533|ref|ZP_04456699.1| putative LysR-family transcriptional regulator [Yersinia pestis
           Pestoides A]
 gi|229840140|ref|ZP_04460299.1| putative LysR-family transcriptional regulator [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842221|ref|ZP_04462376.1| putative LysR-family transcriptional regulator [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229904040|ref|ZP_04519153.1| putative LysR-family transcriptional regulator [Yersinia pestis
           Nepal516]
 gi|21957238|gb|AAM84124.1|AE013655_1 hypothetical [Yersinia pestis KIM 10]
 gi|45435142|gb|AAS60702.1| putative LysR-family transcriptional regulator [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51587970|emb|CAH19573.1| putative LysR-family transcriptional regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|115346094|emb|CAL18962.1| putative LysR-family transcriptional regulator [Yersinia pestis
           CO92]
 gi|149290083|gb|EDM40160.1| putative LysR-family transcriptional regulator [Yersinia pestis
           CA88-4125]
 gi|229679810|gb|EEO75913.1| putative LysR-family transcriptional regulator [Yersinia pestis
           Nepal516]
 gi|229690531|gb|EEO82585.1| putative LysR-family transcriptional regulator [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696506|gb|EEO86553.1| putative LysR-family transcriptional regulator [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229706217|gb|EEO92225.1| putative LysR-family transcriptional regulator [Yersinia pestis
           Pestoides A]
 gi|320013862|gb|ADV97433.1| putative LysR-family transcriptional regulator [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 328

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 139/295 (47%), Gaps = 10/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L  F  +    S + AA +L+++ SS SR ++ LE ++G+ L  R  R + LT+ G 
Sbjct: 21  YKHLENFIKIVECNSLSIAAHKLNITPSSTSRSLAQLEEKLGVVLLKRTTRSIVLTDAGD 80

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L     ++   L+ T +        P G+L+I  +I  G   L     ++     D+ +
Sbjct: 81  YLFHQARQLLLDLDETLVNTHSFYNHPQGQLKITCSIAFGVCHLMHLFSQYKETNSDVCL 140

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L+++ ++++ ++ D A+R+   I   +   R++ TI+     +  YL     P +I+
Sbjct: 141 SVDLNDQLVNLNEEHFDIALRITS-IPPPNFAIRRICTINWVYCGSKEYLMKRGVPATIE 199

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H+ +    + P   + + + +T    +     + +Q NS L ++   +   GI  L
Sbjct: 200 DLEQHDCL----VNPNVSDAWLYKSTEGESVPLKIKNTVQANSSLGLLHAALHHQGIVCL 255

Query: 245 PDYIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P Y++ D   +  LV I+ D       + +Y  Y  +  N  K+++F +F+  + 
Sbjct: 256 PTYMLGDYITSGKLVPILLDYNAKDKEYGLYALYYPSKYNDPKIRSFIDFMLDEL 310


>gi|241666688|ref|YP_002984772.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862145|gb|ACS59810.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 301

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 120/292 (41%), Gaps = 7/292 (2%)

Query: 1   MSF--DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M++      LR    +    SF  AA++L LS S++S  +  LE  +G++L +R  R + 
Sbjct: 1   MNYKPSLADLRALSAIVNHRSFRKAADELGLSPSTLSHMMRSLEANMGVRLLHRTTRSVA 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            TE G +L    + ++   +    E+ E    PSG LR+ T+    + LL   +  FL  
Sbjct: 61  ATEAGERLVTRLTPLFRDFDLALEEVNEFRGHPSGTLRVNTSEIAARVLLDAAVPTFLTC 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YPD+ + L+ DN+ +D+  D  D  IRLR+ +    +           A A+P YL    
Sbjct: 121 YPDMSLDLVTDNRLVDVVADGFDAGIRLREAVPLDMIAVEFGGDTRFVAVASPAYLAAHP 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P +   L  H  I F     K              I       L ++    + Q    G
Sbjct: 181 APQTPDALKTHACIRFRLPSGKLFRWE--FEKHGHEIAVDVPGVLTLDHVELMAQAAAKG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            GIA + D   +   ++  LV +++D       +   YP        L+AF 
Sbjct: 239 LGIAYVSDRTARPFLESGALVTVLDDWCPAIPGLCLYYPGHRHVPQGLRAFI 290


>gi|90579488|ref|ZP_01235297.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90439062|gb|EAS64244.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 313

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V  S SF+HAA++L ++ S +SRQIS LE E+ ++L  R  R  +LT  G + 
Sbjct: 12  DIAAFVTVVESESFSHAAKKLGMTPSGVSRQISRLEKELQVQLIKRSTRSQSLTIAGQEA 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  + +       +      G L IA+       +LQ  L EF+  YP +Q+++
Sbjct: 72  YQYGKNILQQAQDVVNIASKQKQDIEGILTIASPKAFCCQVLQPLLLEFVDTYPKLQLKV 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +K ID      D   RL    Q+ +L+ ++L T  +   A+P+YL+    P   ++L
Sbjct: 132 QVTDKPIDPLYHDVDVVFRLTNEPQN-NLVAKQLATNDLVLCASPYYLEKKGTPTHPKQL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ I  G+        F    + D  +         VN     +   +   GIA+LP 
Sbjct: 191 AQHDCIYLGETNTDNQWRF---KSEDEELKVTVNGRYIVNHTEMRLDAALNHFGIAVLPA 247

Query: 247 YIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ +    +  L  ++ D         TV+  Y   +    + + F +FI  +
Sbjct: 248 FVAQKALQSKALTAVLNDWTLLDNYQGTVFMQYLPNINMPYRQRVFIDFITER 300


>gi|330819194|ref|YP_004348056.1| transcriptional regulator, lysr family [Burkholderia gladioli BSR3]
 gi|327371189|gb|AEA62544.1| transcriptional regulator, lysr family [Burkholderia gladioli BSR3]
          Length = 310

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 6/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LRVF  +A SG F  AA+ L + ++++S+ I  LET + +KLF R  R + +TE+G   
Sbjct: 6   ALRVFVRIAESGGFGKAADTLDVPRATVSKLIQELETHLRVKLFQRSTRKVVVTEEGQSY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R   ++   L+       +   KP G++R+         +L   L EF   +PDIQ+ +
Sbjct: 66  YRNVVKLLADLDEMDGRFADVHGKPRGRVRVDIGSSFANLILLPRLPEFRRRFPDIQLDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+  +  DC IR    +  +SL+ R++ ++    YA+  YL     P    EL
Sbjct: 126 GVSDRHADLIGEGVDCVIR-GGELSDASLVARRIASLEWGTYASAAYLAERGTPGHPDEL 184

Query: 187 DK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIALL 244
            + H L  +   +        +    +R   EP+    + VN   + +   V G G+   
Sbjct: 185 REGHELSGYFSSLTGRPFPMLFERGGERLTVEPKGARAVCVNESTAHLTSLVSGLGVGQT 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             ++ +       LVRI+     P   V+  + +A  N+ +L+ F +++  
Sbjct: 245 FAFMAQPAVARGELVRILPKWTRPVQPVHVVFAQARYNSARLRVFVDWVVE 295


>gi|84386686|ref|ZP_00989712.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84378492|gb|EAP95349.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 299

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 11/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +++F  V   GSF+ AA+ L ++ + + R I+ +E  +G  L  R  R + LT 
Sbjct: 1   MDKYRNMQLFCTVVDKGSFSRAAKALGITPAIVGRHIAAMEDSLGFVLLNRTTRSMHLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIE-LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            G   +     V   +E  +          P G +R++    +G   L   +KEF   Y 
Sbjct: 61  GGKAYYEGAQAVLSDIEQLEDSLTTAHQNNPEGLIRLSAPDAMGPY-LMTVIKEFRKEYT 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+  L L N  +++  +  D +IR    +Q SS I  KL    +  YA+P Y+   + P
Sbjct: 120 GIRFDLALSNSHLNLIEEEIDLSIRFSFELQDSSYIATKLGESELGLYASPSYISEYQAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGS 239
               +L  H+ +  G+      +   W+ TVD      R   + V +   +++Q  V G 
Sbjct: 180 SDYTDLKNHDCLHMGN----SRDGDYWMLTVDGKSLSYRQPWVAVISDSNTLIQAAVDGM 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA++P   V    ++ +LV+I      P   +Y  YP       +L  F  ++  
Sbjct: 236 GIAMIPSIFVNKYVNSGSLVKIKNVAEFPIVNIYGMYPTRKHVPYRLSLFLEYLKA 291


>gi|307300374|ref|ZP_07580154.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306904540|gb|EFN35124.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 318

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 137/294 (46%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F      G F+ AA    ++ S++S+ +  LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEIFAKAVELGGFSAAARHYRMTPSAVSKLVLRLEERLGVRLVNRSTRKLQLTPEGHAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  T  +   ++  +     +   P G++R+      G ++L   + EF   +P + + +
Sbjct: 71  YERTVRILADIDEAERS-ASAGESPVGRVRLNVNASFGTHVLMPLVPEFRAHFPAVSLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +  +D+    AD AIR   P++SS+LI RKL    M   AAP Y++    P S++EL
Sbjct: 130 VMTDAVVDLMEARADVAIRAG-PLKSSTLIARKLGATRMMIVAAPSYIERNGMPSSLEEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + F             L T    +  P    +QV+    + Q  + G+G+A L +
Sbjct: 189 KGHERLGFCYARAVDGWP---LRTDGETVVLPASGAVQVSDGEGLRQLALAGAGLARLAE 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V+++     LV ++ED+       V+  Y  +      +++A  +F+   AR
Sbjct: 246 FTVREDVSARRLVPVLEDLNPGDLEEVHAVYLGQGGALPARVRAVLDFLARHAR 299


>gi|325927386|ref|ZP_08188634.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|325542207|gb|EGD13701.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 333

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 63  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 123 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 182

Query: 183 IQELDKH-NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H  + T  D   +  E       + R   +PR++      +  +      G GI
Sbjct: 183 PSELANHTTMSTSEDEAHQRWELHGPNGEMRRVDLQPRLAGF---DFPLLQSMARDGFGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP+ +  +   +  L  ++     P    +  +         ++ F +F+  
Sbjct: 240 TMLPETVCAEAVRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 293


>gi|237800755|ref|ZP_04589216.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023613|gb|EGI03670.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 303

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 133/296 (44%), Gaps = 8/296 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M++ + D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++
Sbjct: 1   MNYPNLDDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQSMGVVLLHRSTRQVSI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +++     +   ++    E+     +PSG LR+ ++   G+  +   L E    Y
Sbjct: 61  TEDGERVYEWARGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I+L + ++ +D+  +  D  IR+   I +  L  R L T      A+P YL+    
Sbjct: 121 PKLDIRLDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLATNWRVLCASPAYLQQRGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PLS+ EL  H+ +   +           L              L  N      Q+C+ G 
Sbjct: 180 PLSLGELANHDCLVIKERDRPFGIWH--LNGSQGAETVKVTGSLSTNHGEIARQWCLDGR 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+ L   + V+       L++++ +    +  ++  +   L ++ K++    F+  
Sbjct: 238 GVLLRSLWDVRTDLAEGRLIQVLPEYRQDA-DIWAVHTSPLMSSAKVRVTVEFLRE 292


>gi|86356917|ref|YP_468809.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86281019|gb|ABC90082.1| transcriptional regulator protein, LysR family [Rhizobium etli CFN
           42]
          Length = 297

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 126/297 (42%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + V   V   GS + A+  LH   +++SR++S LE  +G +L  R  R + LTE
Sbjct: 1   MDRLEAMTVLLTVVEQGSLSAASRHLHSPLATVSRKVSELEAHLGARLLQRTNRKVALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  ++E  +         P G+L +   I  G+  +     +FL  YPD
Sbjct: 61  AGRAYVEAAREILDRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVAVDFLKAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L ++  ++  D+ D A+R+   +   +LI  +L  I    YA+P YL       
Sbjct: 121 INLRLMLGDRLANLVEDHIDLALRIGN-LADINLIATRLGLIRRTVYASPDYLALHAAIR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ ITF  +       F       R +  P  S L VN+  + +   V G GI
Sbjct: 180 HPSDLSAHDCITFEGMASTRSWTF---VEGKRELVVPIRSRLAVNTAEAAVDATVAGLGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y          LV ++ D       V+  YP       K++A  +F   + R
Sbjct: 237 TRVLSYQAAGAEKAGLLVPLLADFEQQPAPVHLVYPSQGLVPLKMRALIDFATPRLR 293


>gi|218463115|ref|ZP_03503206.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Kim 5]
          Length = 295

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  VAR  SF  A E+  ++ S++S  +  LE  +GI+L  R  R ++LTE G
Sbjct: 5   ELSELAAFAAVARHKSFRKAGEERGVTASAVSHAVLNLEERIGIRLLNRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       + ++      L      P GK+RI     +G  ++   +   L   P++Q
Sbjct: 65  ELLISHLDPAFGEMAAALDALNRYRDTPFGKVRINVPNSIGPIVIGRIIAPLLQRNPNLQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +DI  +  D  IR  + +    +  R    I +    +P Y +   +P + 
Sbjct: 125 LEINATDRLVDIVEEGFDAGIRFGERVTEGMIALRMKPRIRLVVVGSPAYFETRPKPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H  I   ++ P             + +       L ++ +  +MQ  + G G+A 
Sbjct: 185 HELKRHLCI--QNMFPSGARYAWEFEKDGQTVSFQPTGPLSLDDHELMMQAALDGVGLAY 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + +  V+       L+++++D   P   +Y  YP     +   +A  + I  
Sbjct: 243 IWEPRVERAVAGGELIQVLDDWCQPEEPLYLYYPSRRHMSAGFRAVIDAIRA 294


>gi|163793890|ref|ZP_02187864.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
 gi|159181001|gb|EDP65518.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
          Length = 312

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 134/296 (45%), Gaps = 12/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +LH++Q++IS QI  LE  +G+ LF R  R L LT+ G 
Sbjct: 7   LNSLRAFEAAARHLSFTKAAGELHVTQAAISHQIKSLEEWLGMVLFKRQNRALLLTDAGQ 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E + ++     +L+E     SG L ++T        L   L  F   +PDI++
Sbjct: 67  AYLPPLREAFDRIHDATAKLRERDK--SGALTVSTFTSFAAKWLVPKLGRFASGHPDIEV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L +++  +D   D  D  IR  +      L   +L+T  +    +P  L         +
Sbjct: 125 RLAINDVLVDFGSDAVDVGIRYGRG-DWRGLRTERLMTEVVFVVCSPRLLDGPAPLTCPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H ++   D +P+  +   WL        + R   L  N    ++Q  + G G+AL 
Sbjct: 184 ELRYHTMLH--DDLPEDWD--TWLEAAGAGPIKARRD-LAFNHSEMVLQAAIDGLGVALG 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
              +V D+     LV+  +  +      Y  YPE  +   K+KAFR+++  + ARD
Sbjct: 239 RSVLVADDLAAGRLVKPFDLELPTQAAYYLVYPEGTQERPKVKAFRDWVTSEVARD 294


>gi|116250067|ref|YP_765905.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254715|emb|CAK05789.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 323

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  VA+  SF  AA +L ++ S+IS+ +  LE  VG  LF R  R + LTE G 
Sbjct: 12  LDGVEAFLSVAQHRSFRKAAGELGVTPSAISQAVRALEERVGAVLFIRTTRSVGLTEAGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        + +L       +E   +P+G LR+     +   LL+  +  F   +P+I++
Sbjct: 72  RFLTRAKPAFEELVAASALARELGQRPAGLLRLTVPPAVVPILLEPLIASFCQAFPEIEV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  + + +DI+ D  D  IRL + I +  +  R   +  +    +P YL+    P  I 
Sbjct: 132 EIAANEELVDIAADGFDAGIRLGQFIAADMVAVRLTPSFPLVVVGSPEYLRRRGWPERID 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I                    +PI       L  + + +++   +   G+A +
Sbjct: 192 DLRQHACIRMRRSNGSIAPWS--FVIGKKPIEAVVSGPLIAHDFPTMLGATIGDMGLAQV 249

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P+ I         LVR++E     +  V+  YP   +   KL+AF + +  +A
Sbjct: 250 PEPIAAGPVKAGKLVRVLEVFEPVAPGVFLYYPSRHQVMPKLRAFIDHVKSRA 302


>gi|254250108|ref|ZP_04943428.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124876609|gb|EAY66599.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 301

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 128/297 (43%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDRLDGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +  GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALAELEAAEADLDCGRHEARGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +     AP YL     P
Sbjct: 121 HLRIDVSITDRFVDLVEEGIDLAVRIGPLADSTSLAVRRLGTQYGSLGVAPSYLARHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H  I +       ++ +   A     +       L  +   +I      G G
Sbjct: 181 QSLDDLKNHRTIAYSR--SGVVQPWYLRAPDGSSVHIDMPHQLSFDDVQAIAAAGASGFG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP +++        +V +++        ++  +P+      K +   + +    
Sbjct: 239 IAWLPSWLLDHYVKRGEMVVVLDRCFVCEGDIHAIWPKTRYLPRKTRCVIDALVEAV 295


>gi|147671628|ref|YP_001215087.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|262169247|ref|ZP_06036940.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
 gi|146314011|gb|ABQ18551.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|227015636|gb|ACP11845.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|262022528|gb|EEY41236.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
          Length = 308

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 129/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + ++     A  +L LS ++++ ++  LE   G+KL  R  R L+LTE
Sbjct: 1   MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+ + +  T+  LQ  S +  G L+++   D+G+  +   L  F   YP+
Sbjct: 61  SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++       IR  + +  SSLI RKL        A+P YL     P 
Sbjct: 121 VVPYLYLNDNISNLAESGLGVVIRYGE-LADSSLISRKLAPSRRVLCASPAYLARKGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W    +       I      +    I Q+ + G G
Sbjct: 180 TPQDLVQHDCLA---MVRSNEEMKTWHFQENEQHKVITIVPKSFADDGEVIRQWALAGMG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+D+     LV +++  +             +   Y        +L+ F +F
Sbjct: 237 IALKSILDVQDDLNQQRLVTVLDGYMKNFNASTSASGADLNVLYLSRQYQPKRLRLFIDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LIEQ 300


>gi|296104422|ref|YP_003614568.1| hypothetical protein ECL_04085 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058881|gb|ADF63619.1| hypothetical protein ECL_04085 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 295

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 139/295 (47%), Gaps = 5/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +  +F  VA +GSFT AAE + L+++ +S  I  LE E+G+ L  R  R LTLTE 
Sbjct: 2   LNLQRTAMFVAVADAGSFTAAAESMGLTKAVVSFNIRQLEDELGVTLLLRSTRRLTLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++ +  +  + E  Q +++ +    +G+LRI TT + G  ++   L EF   +P++
Sbjct: 62  GALFYQRSVRLLQEAERLQDDVRANHAGLTGELRITTTPEYGSQVVVPLLAEFSQQHPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ +  ++  D+  +  D AIRL   +  S      +    +   AAP +L N     S
Sbjct: 122 RVRHVSSSQHADLISERFDVAIRLG-TLADSRYHAALISNFTILPVAAPGWLANHPV-ES 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                     +   L  +S  ++M +   G G+A
Sbjct: 180 LEHLAQAGWIVHERLPSPLHWQVKDADGNLVAFEIKKAPRLYADSAQALMAFAHAGCGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP+++V+   ++  LV ++         +Y  YP+A     K++ F +F+  + 
Sbjct: 240 LLPEWLVRNALNSGGLVSLLPGYTFAQQGIYAVYPDAQHVPAKVRTFIDFMRARV 294


>gi|271499952|ref|YP_003332977.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343507|gb|ACZ76272.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 289

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 132/293 (45%), Gaps = 13/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++  + F  V  +GSF+ A++++ +  S++SR+I+ LE E+ ++L  R   G+  TE+
Sbjct: 1   MDFNTTKWFIAVVNAGSFSVASDRMGVPISTLSRKINQLEQELNVQLLERSRHGVKPTEK 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K           LE  Q  +  +     GKLR++   +         L  F   YPDI
Sbjct: 61  GQKFFEQARLGVELLEDAQKSVISAHT-LQGKLRLSVPPNFSIWW--NLLIAFQQRYPDI 117

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +      + +D+  D  D A+R+   + + ++I + ++T+     A+P  L     P +
Sbjct: 118 TVFCHSSERVVDLFEDGIDVALRMGN-LNTDNVIAKPVMTVEALFVASPALLARYGTPQT 176

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++E+ +  +  +  L       F W     +   EP       N+   ++ Y + G G+A
Sbjct: 177 LEEMARLPIAAWESLHHGS---FEWGRGSGKVKYEP---AFSSNNIQGLIHYALSGMGVA 230

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + D+ V+   ++  L+R++  +   S  ++  Y      +  ++A+ +F   
Sbjct: 231 QVLDFSVRPWLESSELIRLLPGITMQSLPLHLVYARHKHPSALVRAYLDFCLE 283


>gi|238758348|ref|ZP_04619526.1| HTH-type transcriptional activator aaeR [Yersinia aldovae ATCC
           35236]
 gi|238703471|gb|EEP96010.1| HTH-type transcriptional activator aaeR [Yersinia aldovae ATCC
           35236]
          Length = 303

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT  A QL +S SSIS+ +S LETE+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVECGSFTATARQLEMSVSSISQTVSKLETELNVKLLNRSTRRIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +++    +L   +  P+G LRI  +  + QN+L     E L  YP + +
Sbjct: 64  IYYQGCRRMLQEVQEVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTVEMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  +  D  IR+   +Q S L  R+L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIANGLDVVIRVGA-LQDSGLFSRRLGSMPMVVCAAKSYLAQHGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMTNFSWLEYSVRPDS---NFELIAPEGITTQISPQGRFVTNDSQTMIRWLNAGTGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++    ++  + +   +    VY  Y E  K   K++   +++  
Sbjct: 240 PLMWVIEEIKRGDVEILFKKYHSDPRPVYALYTEKDKMPLKVQVCIDYLTE 290


>gi|254523593|ref|ZP_05135648.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721184|gb|EED39709.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 297

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 129/281 (45%), Gaps = 8/281 (2%)

Query: 15  ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVY 74
           A  GS T AAE L +S++ ++R ++ +E  +G +L +R  R ++LT  G        ++ 
Sbjct: 2   AERGSLTAAAEVLDMSRAMVTRYLAEVEGWLGARLLHRTTRRVSLTGPGEAALARFRQML 61

Query: 75  HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDID 134
              E  Q EL     +P G LR+  ++  GQ+ L   +  F+  +P  +I+L+L ++ ++
Sbjct: 62  EIGEALQGELASDDPEPHGTLRVTASVSFGQSHLARAVAGFVARHPAARIELLLVDRTVN 121

Query: 135 ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF 194
           +  +  D A+R+ + I   SLI R+L T      A P YL+    P + + L  HN +T 
Sbjct: 122 LVEERVDLAVRIARQI-DPSLIARRLATCRSVLCATPSYLQAHGTPTAPEHLAAHNCLTH 180

Query: 195 GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---D 251
             +     +    L    R +       +  N    +++    G+GIA+LP Y V     
Sbjct: 181 HYVGKSLWQ----LHRDGRSLSVAVGGNISANEASLLLEAVRAGAGIAMLPTYQVAPLLR 236

Query: 252 NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  L+ ++ +       ++  Y    +    ++ F +++  
Sbjct: 237 SGELIELLPEFGLDELGIHAVYASRRQQPAIMRRFLDYLAE 277


>gi|332285571|ref|YP_004417482.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330429524|gb|AEC20858.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 296

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 142/291 (48%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L +F  +AR+ S   A  +L ++ +++S+++  LE  + ++L  R  R L +T +G 
Sbjct: 4   YNDLELFASIARTNSLVGAGRELGITGAAVSKRLMALEQRLAVRLVQRTTRTLRITPEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +    +  +L+  +  L+  + KP+G LRI  ++  G+ ++   L EF  LYP++++
Sbjct: 64  RYLQEGKRLLAELQELEQTLRGVTAKPTGLLRINASLGFGRAIVSTILAEFAALYPELEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L ++ +++  +  D  IR+ + ++ + L  RKL +      AAP YL     P ++ 
Sbjct: 124 QLHLSDRALNLVEEGYDIGIRVGE-LRDARLHARKLRSNRRLICAAPGYLDKHGTPANLA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH++I   +   +       L    R       + +  N   + + + + G G+ L 
Sbjct: 183 DLAKHSVIVLHENDQRFGTWH--LQNEARYENLKVRARMSTNDGEAALSWALAGFGLLLR 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ ++       L  ++ D    +  VY  YP   + + K +AF +F+  
Sbjct: 241 SEWSIQALLQEEKLRVVLPDWY-ETADVYAVYPTQDQLSAKTRAFIDFMAA 290


>gi|218703560|ref|YP_002411079.1| putative LysR-like transcriptional regulator [Escherichia coli
           UMN026]
 gi|293403392|ref|ZP_06647483.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|293408421|ref|ZP_06652260.1| transcriptional regulator [Escherichia coli B354]
 gi|298379004|ref|ZP_06988885.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300895665|ref|ZP_07114264.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|301020090|ref|ZP_07184220.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|331651180|ref|ZP_08352205.1| putative transcriptional regulator [Escherichia coli M718]
 gi|331661642|ref|ZP_08362565.1| putative transcriptional regulator [Escherichia coli TA143]
 gi|218430657|emb|CAR11526.1| Putative LysR-like transcriptional regulator [Escherichia coli
           UMN026]
 gi|291429245|gb|EFF02265.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|291471599|gb|EFF14082.1| transcriptional regulator [Escherichia coli B354]
 gi|298280117|gb|EFI21621.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300360394|gb|EFJ76264.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300398967|gb|EFJ82505.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|331050921|gb|EGI22973.1| putative transcriptional regulator [Escherichia coli M718]
 gi|331060064|gb|EGI32028.1| putative transcriptional regulator [Escherichia coli TA143]
          Length = 294

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 129/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDI+
Sbjct: 66  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +        +    L   D+ I         ++      +   LG G+A 
Sbjct: 186 ADLKAHPCIAYQFADGSVYQWE--LNQDDKKITHRPEGQWALSDSYMEAEAARLGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  +V D+     L+R+++        ++  YP     +  L+   +
Sbjct: 244 VPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYPH-RNVSPALRMVID 290


>gi|190892535|ref|YP_001979077.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697814|gb|ACE91899.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 300

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 137/292 (46%), Gaps = 10/292 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  V   G F+ AA    ++ S++S+ ++ LE  +G++L  R  R L LT +G   + 
Sbjct: 13  EVFVSVVERGGFSAAATARRMTPSAVSKLVARLEARLGVRLVNRSTRKLQLTPEGCAFYE 72

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            +  +   +   + +   S  + +G++RI T+   G ++L   +  F+ L+P + + +  
Sbjct: 73  RSIAILADIAEAERQ-ASSGEEAAGRIRINTSGSFGNHVLAPLVPAFMALHPAVTLDIAH 131

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  + AD AIR   P++SSSLI RKL        A+P YL    EP S+ +L +
Sbjct: 132 TDRIVDLMEERADVAIRAG-PLKSSSLIARKLGATRKLIVASPDYLGRHGEPRSVADLRR 190

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  I F     + +E +    +    +  P    +QV    ++    + G+G+A L  + 
Sbjct: 191 HCRIGFS--YARAIEGWPMRES-GETVTIPITPGIQVADGEAMRHLALSGAGLARLASFT 247

Query: 249 VK---DNPNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           V+   D   LV ++E+         Y  Y  +      +++A  +F+    R
Sbjct: 248 VRADIDAGRLVPVLEEANPGDIEEFYALYIGQGGPLPARVRALLDFLAAHVR 299


>gi|167589619|ref|ZP_02382007.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 313

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +   +  F   A  GS   AA    +S  + S  +  LE E+G++LF+R  R L+LT
Sbjct: 1   MN-EIRAITTFVRAATLGSLRSAAVDQGISPQAASHAVMQLEKELGVRLFHRTTRKLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +L          L +   E + +     G LR++    LG  +L    +EF   Y 
Sbjct: 60  EEGQRLLDSVKPALAILSSALDEARRAKEDVGGILRVSAPRALGLPVLWPYFEEFQKRYQ 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q+++  D++  D+  D +D   R   P  S   I R+LV I +   A+P Y++    P
Sbjct: 120 NVQLEVQFDDQFTDLVADRSDVGFR-GGPPPSGGSIARRLVPIQLIVCASPEYIERNGAP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I+EL +H    +       +  + +    D  +     + + VN      Q  + G G
Sbjct: 179 RTIEELARHRCTGYRRANTGKLAQWQFRID-DEIVYRDVPAAICVNDTELETQAVLSGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  L  +       +  LV ++   +T    +Y  Y    + + ++K F +F+  +
Sbjct: 238 IGQLGSFNAATHIRSGRLVPLLTRHVTEYGMIYIYYKHRTEQSLRVKTFIDFMVER 293


>gi|237653957|ref|YP_002890271.1| LysR family transcriptional regulator [Thauera sp. MZ1T]
 gi|237625204|gb|ACR01894.1| transcriptional regulator, LysR family [Thauera sp. MZ1T]
          Length = 307

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 5/296 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D + L VF  V   GS T AA++L L +S++SR++S LE ++G +L  R  R L +TE
Sbjct: 8   QIDPNDLLVFARVVAEGSLTAAADKLGLPKSTVSRRLSRLEEQLGERLLLRTTRRLNITE 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L     ++  ++E      +    +PSG+LR++   D    LL   L  F  L+P 
Sbjct: 68  FGAALLDHARQLESEVEAVAALAESRQARPSGRLRVSMPSDFANLLLTDMLAAFAALHPA 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  + +D+  +  D AIRL      + L  R+L       YAAP YL    EP 
Sbjct: 128 VTLELDLSPRRVDLLGENFDLAIRLGDLPDDALLAARRLAVFPWGLYAAPAYLAEHGEPQ 187

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  +         +  +  L    R  G P    +  NS   ++++    +GI
Sbjct: 188 APDDLHRHRALRLLARTGDAIR-WTLLCGDQRWEGVPP-GSITANSPELLIRFACAAAGI 245

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +P+Y    +     L R++ D   PS   +  +P       K +AF + +    
Sbjct: 246 TTVPEYFAAPHVQRGELRRVLPDWRPPSIAAWAVFPGRRLMPAKTRAFLDMLQAAL 301


>gi|254284519|ref|ZP_04959486.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|150425304|gb|EDN17080.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
          Length = 312

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+   +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLVQRGTPIHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALTAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|115360182|ref|YP_777320.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285470|gb|ABI90986.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 306

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 121/275 (44%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 31  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 90

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 91  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 150

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L        AAP YL     P +  EL +HN I    GD      
Sbjct: 151 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGTPGTPHELTRHNCIGIRQGDEGYGIW 209

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
                               L  N     +++ + G GI +  ++ ++D   +  LV ++
Sbjct: 210 RLTGGRGAARNTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADGRLVVVL 269

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D  TP+  +Y  Y +  + + +++AF +++  + 
Sbjct: 270 PDYETPAADIYAVYAQRHQMSARIRAFVDYLAREL 304


>gi|163740220|ref|ZP_02147614.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161386078|gb|EDQ10453.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 317

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 144/297 (48%), Gaps = 9/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L VF  +A++GS T AA+++ L +S++SR++S LE  +G++L  R+ R   LT  G
Sbjct: 24  DLNDLAVFAAIAQAGSITGAAKKMKLPKSNVSRRLSRLEDRLGVQLIERNTRSSRLTSIG 83

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  +       ++ S  +P+G+LR++ ++ +GQ ++   +  +   +P +Q
Sbjct: 84  IRYADYCRLMVEEANAADAVVETSLGEPAGELRVSASVLVGQQIIAPAIAAYGQQFPKVQ 143

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L N   ++  D  D A R+ +    SS++ + + T     YA+P YL++   P   
Sbjct: 144 VILELTNMRANLIEDGFDLAFRIGEK-PDSSMMSQAIGTFPFGLYASPGYLRSSGNPQLP 202

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  H  +    ++    +   W    D  + +   +  + VN +L++    + G GIA
Sbjct: 203 RDLQHHRCL----IMRSGFKTSRWKLQRDGEVIDFAANGDVVVNDFLTLRNLAIAGGGIA 258

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +LP Y V     +  L  ++ +    S  +   YP     T K +AF + +   A +
Sbjct: 259 MLPAYAVHAECASSLLSAVLPNWSASSVPLSAIYPSRRGATLKQRAFIDHVRQAAEN 315


>gi|83716532|ref|YP_438306.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|257141335|ref|ZP_05589597.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650357|gb|ABC34421.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 314

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 129/300 (43%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +  +RVF  VA +  F+HAA QL+LS S ++R +  LE+ +G+KL  R  R   LT
Sbjct: 1   MNHLFSAMRVFLKVAETHHFSHAANQLNLSPSLVTRYVGDLESHLGVKLLQRSTRKTVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +   L   +      S   +G L +     +    L G   E+   +P
Sbjct: 61  EVGVRYAEGCRALLANLHEIESRATHESSAIAGDLHVVALDSITSPELAGLFAEYQSRHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ +++   + ++D+     D  I     I S SL+ R L+   + A A+P YL     P
Sbjct: 121 DVSLRITQTDSEVDLLGGGFDVGIVADTMITSVSLVSRTLIHAPLVAVASPGYLLQAPPP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H +I            + W    +        + + VN+     Q  + G G
Sbjct: 181 ARPADLARHRIIGLA----AGARTYRWTGKNNAVDTTQIDTPITVNNAPMQRQLVLAGGG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I LLP+Y+V ++     L R++ D        T+   YP      GK++AF +     AR
Sbjct: 237 IGLLPEYLVANDLRIGTLTRLLGDYRIANDGVTISLVYPGREFLPGKVRAFVD--LAAAR 294


>gi|28898450|ref|NP_798055.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836252|ref|ZP_01988919.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308094384|ref|ZP_05888966.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308095116|ref|ZP_05903524.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308125828|ref|ZP_05777677.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|308126327|ref|ZP_05909356.2| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28806667|dbj|BAC59939.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750527|gb|EDM61272.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308086042|gb|EFO35737.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308093612|gb|EFO43307.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308110683|gb|EFO48223.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308111607|gb|EFO49147.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 305

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 141/293 (48%), Gaps = 9/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VAR  SFT AA ++ ++++++S+ + GLE ++ ++L  R  R ++LTE+G +L 
Sbjct: 11  LTWFAHVARHRSFTKAASEMGVTRAALSQHVKGLEKQLQVRLLNRTTRNMSLTEEGQRLL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    +E T   L +  ++P+G +RI+ +    + L++ +L EFL  YP I+++LI
Sbjct: 71  DTLHPSLSNIEQTLNSLNDLHIEPAGLIRISVSRTAARLLIEPHLGEFLSRYPKIRLELI 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQEL 186
           +D+   +I  +  D  IRL   +    ++   +   +      +P Y K   +P +  +L
Sbjct: 131 MDDGLTNIVAEGMDAGIRLGVSL-DEHMVAIPITPNLTNAIVGSPDYFKRYGKPETPNDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA- 242
           + HN + +       ++ ++  +        I EP+ + +  N   S++Q  + G G+  
Sbjct: 190 EHHNCLAYRFTSSGTLDHWSLTSPDVDKHTVIFEPKGNAV-FNDDYSMLQAAMQGVGLIK 248

Query: 243 LLPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +  +++K  +   L R+  D   P    Y   P       K++   +F+  K
Sbjct: 249 HIDLWVLKYLEEGKLERVFVDWCKPFPGFYLYIPSRENMPKKIRVLMDFLIEK 301


>gi|294663920|ref|ZP_06729352.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606312|gb|EFF49531.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 338

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPRYLDRAGRPKD 187

Query: 183 IQELDKH-NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H  + T  D   +  E       + R   +PR++      +  +      G GI
Sbjct: 188 PSELANHTTMSTSEDEAHQRWELHGPNGEMRRVDLQPRLAGF---DFPLLQSMARDGFGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP+ +  +   +  L  ++     P    +  +         ++ F +F+  
Sbjct: 245 TMLPETVCAEAVRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 298


>gi|194365773|ref|YP_002028383.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348577|gb|ACF51700.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 343

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSF  AA++L + +S++SR +  LE+++G++LF R  R  TLT +G      
Sbjct: 29  AFIAVAAEGSFARAADRLGIGRSAVSRSVQKLESQLGVRLFLRTTRSTTLTREGELFLEG 88

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            +   + +     E+++     P G LRI+ +   G+ ++   L  F   YP + ++L+L
Sbjct: 89  CNPGVNCILQALEEMRDLREGPPRGHLRISASHGFGRRVIAPLLAAFRAEYPQVSVELLL 148

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D +  D++ D  D A R    ++ S +I ++LV + +   A+P Y++    P S+  L  
Sbjct: 149 DEQAPDLAGDRIDVAFR-DGLLEDSQVIAKQLVPMQLVVCASPAYVRAQGLPSSVDALST 207

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  I       +       +   D  +  P  + L  N     +Q  + G GIA LP Y 
Sbjct: 208 HACIGRRLPGGRMQPWEFRVDGTDVHLQPP--AALVFNDADLALQAVIDGLGIAQLPSYQ 265

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           V++      +V  +E         Y CY    +   +++AF +F   + R  + 
Sbjct: 266 VREALWAGRVVTCLERYAPLDRGHYLCYLSRRQLPKRVRAFIDFSTQRVRALEL 319


>gi|34498709|ref|NP_902924.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34104560|gb|AAQ60918.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 301

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 122/296 (41%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  VAR GSF  A  +L L  +++SR+I  LE  +  +L  R  R L+LT  
Sbjct: 2   LDLNDVALFVQVARLGSFAEAGRRLGLPANTVSRRIQQLENALDSRLMQRSTRKLSLTSA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++  +     L            +P G +R+A T D    L    + EFL  +P +
Sbjct: 62  GEAFYQRCAASVDSLLDAGQAQTGDGGEPGGLIRVAATADFFDFLPMEWVAEFLDAHPRV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPL 181
           +I+  L +   D+  D  D A R    +  S  + R+L V       A+P YL +   P 
Sbjct: 122 KIEFALSDARADLIADRIDVAFR-GGELADSGYVARRLPVAGGGGLVASPAYLASRGAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ EL  H+ +T    IP     +  +    R          + ++  +  +  + G GI
Sbjct: 181 SLAELAGHDCVT--TRIPGEWTTWKLIGPDGREEAVQVGGRFRGDTAQAQRRAALAGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP  + +   +   L  ++     P   +   YP        + AF + +  + 
Sbjct: 239 ALLPPALARLDLEAGRLRPVLPQYRRPGPGLSVLYPSRKHLPAAVSAFVDMVVERL 294


>gi|30064575|ref|NP_838746.1| putative DNA-binding transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|56480295|ref|NP_709039.2| putative DNA-binding transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|30042834|gb|AAP18557.1| putative LYSR-type transcriptional regulator [Shigella flexneri 2a
           str. 2457T]
 gi|56383846|gb|AAN44746.2| putative LYSR-type transcriptional regulator [Shigella flexneri 2a
           str. 301]
 gi|332752447|gb|EGJ82836.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-671]
 gi|332754325|gb|EGJ84691.1| HTH-type transcriptional activator aaeR [Shigella flexneri 2747-71]
 gi|332999320|gb|EGK18906.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-272]
 gi|333000301|gb|EGK19884.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-218]
 gi|333014648|gb|EGK33995.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-304]
 gi|333014689|gb|EGK34035.1| HTH-type transcriptional activator aaeR [Shigella flexneri K-227]
          Length = 303

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 78/284 (27%), Positives = 128/284 (45%), Gaps = 7/284 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP +   L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSANLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
            H+ + +     +   +F  +A                N  ++++++   G+GIA +P  
Sbjct: 180 SHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYVPLM 236

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +++ +     L  ++    +    VY  Y E  K   K++   N
Sbjct: 237 WVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVIN 280


>gi|332160549|ref|YP_004297126.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318606979|emb|CBY28477.1| lysr-family transcriptional regulator clustered with PA0057
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664779|gb|ADZ41423.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863539|emb|CBX73655.1| hypothetical protein YEW_CV11670 [Yersinia enterocolitica W22703]
          Length = 298

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT  G     
Sbjct: 8   EVFVTIVERGSMIAAAETLEMSRAMVTRYLAEMEQWAGARLLHRTTRKLSLTHAGEATLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +   + + +  G LRI+ +  LGQ+ +   + ++L  YP + + L +
Sbjct: 68  RCRHMLEFAKDMDLIEGQENEELRGLLRISCSQSLGQSAVAIAVTDYLRRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L   H    AAP YL     P +  +L  
Sbjct: 128 NNRSVNLVEERIDLALRITNDL-DPNLIARPLSICHSVVCAAPSYLSAKGTPKTPPDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                            L  N  + ++   + G+GI L P Y 
Sbjct: 187 HNCLTYSYFGKSLWH----FDQQGVKSSVAVGGNLSANESVVLLSGALEGAGITLQPSYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+R++ D    +  +Y  Y    +    L++  +F+  
Sbjct: 243 AAPYIASGELIRLLPDYHPQAMGIYGIYTSRRQMPATLRSMLDFLVE 289


>gi|284920084|emb|CBG33143.1| LysR-family transcriptional regulator [Escherichia coli 042]
          Length = 294

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 130/288 (45%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L  NL  F   YPDI+
Sbjct: 66  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPNLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +        +    L   D+ I         ++      +   LG G+A 
Sbjct: 186 ADLKAHPCIAYQFADGSVYQWE--LNQDDKKITHRPEGQWALSDSYMEAEAARLGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  +V D+     L+R+++        ++  YP     +  L+   +
Sbjct: 244 VPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYPH-RNVSPALRMVID 290


>gi|332530225|ref|ZP_08406172.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040346|gb|EGI76725.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 309

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 121/288 (42%), Gaps = 8/288 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA  GS   AA+ L +S + +SR +  LE  +G +L +R  R +TLT+ G     
Sbjct: 8   QVFVTVAERGSLIQAADHLEMSAAMVSRYLVSLEDWLGARLLHRTTRRVTLTDAGRLALP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +  +      S +P G+LR+   +   +  L   L  +   YP + I L  
Sbjct: 68  SCRQLLETADDVKHIAGNLSQEPRGRLRLTCALSFAEAQLTPALMAYQQRYPQVHISLAT 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +  I+++ D  D A+R+   ++  +LI R L T      A+P YL+    P ++ EL  
Sbjct: 128 TDLGINLAADQIDLAVRISNSLE-PTLIARPLATCRSVLCASPEYLRRHGTPATVDELPH 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  +    +              D+ +          N    + +  + G GI +LP Y 
Sbjct: 187 HRCLAHALVSATQFR----FRQGDKVVEPTVDVSFTTNETAILRRALLSGGGIGILPTYY 242

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           V ++     LV +++D    +  ++  +         L+   +F+  +
Sbjct: 243 VSEDLRRGELVPLLKDYQLETLGIHAVFLSRQHQPLALRLLVDFLAEQ 290


>gi|260463168|ref|ZP_05811370.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031018|gb|EEW32292.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 306

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 126/296 (42%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + VF  V   G+ + A   + +S +  S +I  LE  +G++LF R  R L  TE G+
Sbjct: 4   LDNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTEHGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +V   +   +  +   S +P G +R+   + LG+ L+   + +F   YPDI++
Sbjct: 64  VFYAGAKQVLEAITEAEAAVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPDIEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L + ++DI  +  D A RL   I+ SSL  R ++       AAP YL+   EP+  Q
Sbjct: 124 RLRLSDHNVDIMKEGIDVAFRLG-IIEDSSLRMRGIMECERVLVAAPKYLEARGEPVEPQ 182

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL   KH+ +          E    L T   P           +    +  + + G GI 
Sbjct: 183 ELIGKKHDCLML--RYSGAREYVWTLQTPTGPQKFEVHGPYDTDDGDVLTGWALSGRGII 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             P + V+    +  L  I+ +           YP       K++   +F+  + +
Sbjct: 241 NKPRFEVEPFIRDRRLKVILSNTPPTPVQFAAVYPHKKLQDPKVRLLLDFMAERCQ 296


>gi|168261960|ref|ZP_02683933.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205349216|gb|EDZ35847.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 303

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   + D+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHSDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARHPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|294023792|ref|YP_003547111.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292677572|dbj|BAI99088.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 292

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 125/293 (42%), Gaps = 12/293 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +WD +  F  V   G F  AA+ L  S S +SR IS LE  +G +LF R+ R +T T
Sbjct: 1   MTSEWDGIEEFLAVYDRGRFAPAAKSLRKSPSHVSRAISRLEARLGERLFQRNTRIVTPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E           +          L +    P G L +  +I  G+ ++   ++ F+  YP
Sbjct: 61  EFAHAFADRCRHMVEDRIEAFA-LSDGQGPPRGALNVTCSIAFGERVIAPLIRHFVKQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +   L L+N+ +D+  +  D AIR    +  S LI R++ +  ++  A P YL+    P
Sbjct: 120 QVIATLDLNNRVVDLVSENYDVAIRTGH-LSDSRLIGRRIGSRKLYLCATPDYLEKHGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I +L  H  I       +   D       D+ +       L+VNS  ++    +   G
Sbjct: 179 SDINDLKYHACI-------QGTADVWHFIVDDKLVDFRPKGPLRVNSGTAVADAALASFG 231

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LPD+ V+   ++ +LV ++E    P   ++  Y          + F   +
Sbjct: 232 ICQLPDFYVEPYINSGSLVSLLETSSVPEEPIWVVYAHRQHLRLSTRLFIEML 284


>gi|260220716|emb|CBA28552.1| hypothetical protein Csp_A07750 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 300

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 134/303 (44%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA+SGSF+  A+++ +S++ ++R +  LE  +G +L  R  R +TLT+
Sbjct: 1   MDRLTAMQVFVEVAQSGSFSATADKMDMSRAMVTRYVGELEQWLGARLLQRTTRSVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R + ++   +E  + E         G+LR+  ++      +   + +FL LYP 
Sbjct: 61  AGESCLRRSQQMLALMENVEEETSRHDGALRGQLRVTCSMSFAYAEMAAAISDFLALYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L      +++     D AIR+       +LI R L        A+P YL     P 
Sbjct: 121 LKIDLNASEGALNLVEARIDLAIRISAE-PDPALIGRVLAPCASVLVASPGYLAKHGIPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  +++ +      +        +  +G    S    N   ++++  + G G+
Sbjct: 180 NPADLQAHRCLSYANFGKSVWKLQRGEEHAEVHVG----SHFSANEATALLRAALAGGGV 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA--RD 296
           A+ P Y+      + +L +++     P  ++Y  YP     +  ++A  +F+  +     
Sbjct: 236 AMQPTYLASPHLHDGSLQQVLPQWQLPMMSIYALYPSRKHLSPAVRALLDFLVERFASEP 295

Query: 297 WKF 299
           WK 
Sbjct: 296 WKL 298


>gi|262044929|ref|ZP_06017971.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037656|gb|EEW38885.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 309

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 122/299 (40%), Gaps = 11/299 (3%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    L +F  +   GSF+  A Q  ++ S++SR +S LE E+G KL  R  R L L
Sbjct: 1   MNLNLLPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           ++ G  +++   ++                   GKL ++    +G+ ++   +  F   Y
Sbjct: 61  SDAGETIYQHAQQMLEAARQAMDSAGSRQTVAQGKLTLSVLKAVGRFVIHPLMMAFFHRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L L+++ +D   D  D A+R+     S  L  + L+ I     A   YL+    
Sbjct: 121 PQVDVCLRLEDRPLDFIDDGIDLALRITD-TPSPGLHGKPLMPIRHVICATEAYLQQHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + Q+L  H+ I+ G+        F       +            N     +       
Sbjct: 180 PYTPQDLRAHSCISLGETPADARWKFR---REGKTETVQTYGRYAANHTAVRLDAVRQHL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP +  ++   N ++V+++ +     + S  ++  +        +++A  +++  
Sbjct: 237 GIGSLPLFTAREALANGDIVQVLPEWEFISSYSGDLWLLWAGDKHMPARMRAMIDYLSE 295


>gi|170738153|ref|YP_001779413.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820341|gb|ACA94923.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 300

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 130/293 (44%), Gaps = 11/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G +  
Sbjct: 4   LHVFMTVATAGNFTRAAAGLGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R T   Y ++   + EL+++  +P+G LR+         ++   L  F   YP +++++ 
Sbjct: 64  RQTEPAYRQVMQARDELKDARSEPNGLLRVTALPLARLLVIAPVLATFRERYPKVRLEIH 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            DN+ +DI+ D  D  IRL   +Q   +  R    +     A+P YL     P SI  L 
Sbjct: 124 YDNELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPAYLARHGTPESIAALG 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I F       +  +  L    R +          N   +++    +G GIA     
Sbjct: 184 RHACIRFRFAESGRLHKW-LLQDGRRDVDLDPDGVFVTNDDDAVIDAARVGVGIAFA--- 239

Query: 248 IVKD-------NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            V++       +  LV ++         ++  Y        KL+AF + +  +
Sbjct: 240 FVRERIEQDLRDGTLVEVLPGACRTLPPMWLYYVNRKHVPAKLRAFIDVLRER 292


>gi|154247221|ref|YP_001418179.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161306|gb|ABS68522.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 337

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 134/296 (45%), Gaps = 6/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D ++ F +   S SF+ AA +L LS + +S +I  LE  +G +LF R  R ++LTEQG 
Sbjct: 31  LDNMKAFAMSVESESFSEAARRLRLSANVVSHRIQMLEKHLGCRLFNRTTRRMSLTEQGR 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   ++    ++  +  + E    P G LR+   + LG+ L+      +   +P+I +
Sbjct: 91  VYYEAITDALRLIDAAESNVSELGALPRGALRVTAPLHLGRRLVAQVSARYQEAHPEIDV 150

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L    +D+  +  D A+RL    + SS+I RK+  +     AAP YL+    PL  Q
Sbjct: 151 RLRLSEHTLDLIAESIDVALRLA-TFEDSSMIMRKVAQVERILCAAPAYLERAGVPLRPQ 209

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +       + +     L    R +  P    L+ +    +  + + G GI + 
Sbjct: 210 DLLSHQCLLLRFASLRELRWM--LTDEGRDLAVPVTGHLEADDGDVLTVWALEGRGIVVK 267

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P + V D      LV +++       T+   YP       K+KAF + +  + R +
Sbjct: 268 PRFEVADALAEGRLVPVLQAHPPKPATLAVLYPARQLVPLKVKAFADMLVDQGRRY 323


>gi|310823903|ref|YP_003956261.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396975|gb|ADO74434.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 298

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 119/281 (42%), Gaps = 4/281 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  VAR  SF+ AA +L +S  ++S+ +  LE ++ + L  R  R ++LT+ G +L    
Sbjct: 2   FLAVARLRSFSGAARELGVSTPAVSQAVRLLEEQLRVVLLTRTTRSVSLTDAGRRLMESA 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                +      E+     +  G++R++        ++   +  F   +P +++++++D+
Sbjct: 62  GPALGQTLAALSEVSARPGETVGRIRLSVPRVAVPYVIAPVVSPFRARHPRVELEVVIDD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +DI  +  D  +RL + I+   +  R      +    AP YL     P   ++L +H 
Sbjct: 122 RFVDIVEEGYDAGVRLSEAIERDMVQVRLTGAFRLVVVGAPSYLARHGTPQRPEDLLRHE 181

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            ITF       +  +  L    R    P    +  N     +     G G+A + + +V 
Sbjct: 182 CITFRAQTTGTLYAWE-LERGRRNWRVPVRGGVVTNDSPLRVSLAEQGLGLAYVVEPVVA 240

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +      LVR++E         +  YP   + +  L+ F +
Sbjct: 241 EQLREGRLVRVLEAYAPTVPGFFLYYPSRAQRSPALRLFVD 281


>gi|296159346|ref|ZP_06842171.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295890330|gb|EFG70123.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 297

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 123/292 (42%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++++RVF  +A   SFT A++ L + +++++  +  +E  +G +L  R  R + LT 
Sbjct: 1   MDRFEEMRVFVRIAERQSFTRASDDLQIPRATVTNLMKRMEQRLGARLLERTTRTVRLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   +E  +         P G LR+     L ++ +   L  FL  +P+
Sbjct: 61  DGEAYYRRCVRLIADMEEAEGSFSNL--APKGLLRVNLQGTLARHFVVPALPAFLARFPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IELTIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLAAYGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L  H  + +                  R +     S + V          + G GI
Sbjct: 178 DPSALSTHRAVNYVSSATGKAVPLE-FNVAGREVAMVLPSAVSVTGTELYTGSALAGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V        L  I+ D   P   V   YP+  + + +++ F  ++
Sbjct: 237 VQVPQYRVAAELAAGRLKIILADFPPPPMPVSVLYPQNRQLSSRVRVFAQWL 288


>gi|293413523|ref|ZP_06656172.1| LysR-like transcriptional regulator [Escherichia coli B185]
 gi|291433581|gb|EFF06554.1| LysR-like transcriptional regulator [Escherichia coli B185]
          Length = 294

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 129/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V + GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVQEGSFTAAAKRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDI+
Sbjct: 66  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +        +    L   D+ I         ++      +   LG G+A 
Sbjct: 186 ADLKAHPCIAYQFADGSVYQWE--LNQDDKKISHRPEGQWALSDSYMEAEAARLGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  +V D+     L+R+++        ++  YP     +  L+   +
Sbjct: 244 VPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYPH-RNVSPALRMVID 290


>gi|304389125|ref|ZP_07371167.1| LysR family transcriptional regulator [Neisseria meningitidis ATCC
           13091]
 gi|304336924|gb|EFM03116.1| LysR family transcriptional regulator [Neisseria meningitidis ATCC
           13091]
 gi|325203410|gb|ADY98863.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M01-240355]
 gi|325205375|gb|ADZ00828.1| transcriptional regulator, LysR family [Neisseria meningitidis
           M04-240196]
          Length = 303

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 137/289 (47%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LT  G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTGAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +       + ++      +  +         ++ ++ L + +    G+ I   P +
Sbjct: 186 GLPAVLPTYTNQQKLDLTR--KSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPLW 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + +     LVR++     P+  +   Y +    + K+++F +F+  K
Sbjct: 244 AAEHDLRCGTLVRLLPGYAVPTDRLNAVYADRAFLSAKVRSFIDFLNEK 292


>gi|194292790|ref|YP_002008697.1| regulatory protein, LysR:LysR, substrate-binding [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226694|emb|CAQ72645.1| Regulatory protein, LysR:LysR, substrate-binding [Cupriavidus
           taiwanensis LMG 19424]
          Length = 339

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 122/287 (42%), Gaps = 6/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D ++ F  +  +GS + AA QL  +Q ++SR++  LE  +G++L  R    + LTE G 
Sbjct: 25  IDLMQTFVRIVEAGSLSRAAAQLQTTQPTVSRRLQTLEQLLGVRLLQRSTHAMKLTEDGE 84

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    E+       + +++     PSG LR+      GQ +L G L  FL  YP++ +
Sbjct: 85  RCYERARELVADWARFEADVRGVGHAPSGTLRVVVPHAFGQEVLVGPLASFLRQYPEVSV 144

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D   +  DCAI + + +    L+  +L  +     AAP        P   Q
Sbjct: 145 EWLLHDRTPDFIAEAIDCAIHVGE-VHEPGLVAVRLAEVPRAVIAAPSLFDGKPLPRRPQ 203

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+    +         +   N         G      +  +S  ++     LG G+A+ 
Sbjct: 204 DLEDLPWLALRTFYRNEIVLQNLQTQARH--GLTFAPRMSTDSLYALHAAARLGLGVAVG 261

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             +I  ++     L+ ++         +Y  YP+A     KL+ F +
Sbjct: 262 SSWIFAEDIASGRLLHLLPQWQADPLPIYLVYPQARFYPAKLRLFAD 308


>gi|118592757|ref|ZP_01550146.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118434527|gb|EAV41179.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 300

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 132/294 (44%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS+T AA  L +S S+IS+ +  LE ++G+ LF R  R +TLT +G 
Sbjct: 10  LTGLLAFARAGSLGSYTAAARSLSVSPSAISKSVQRLERQLGVPLFNRTTRSITLTNEGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH    ++    E  +   + +  +P+G LRIA +  +G +++   L  F   +  + I
Sbjct: 70  DLHERALKLLRDAEEIEQAAKAARSEPAGTLRIAASFPIGLHVIAPLLPVFRARHQKVSI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L++  +D+  +  D A+R+   +  S L+ RKL    +  YA+P YL     P    
Sbjct: 130 DLRLNDHRVDLIEEGIDLAVRIGD-LPDSRLLSRKLSPHRLCCYASPTYLAASGTPSHPD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  +  +          + F W   + DR +     S + V++  +++     GSGI +
Sbjct: 189 ELQSYETVNL--RYQSSGQLFRWPFRIGDRDVEILPSSSIVVDASEAVISTVAAGSGIGM 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              ++        +LV ++ +       +   +P++ +    ++AF N +    
Sbjct: 247 ATSFMATSWVKRGDLVPVLSEFAVERHNITAVWPQSRRTNPAVRAFLNMLTEAL 300


>gi|187922072|ref|YP_001893714.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713266|gb|ACD14490.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 303

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 73/282 (25%), Positives = 121/282 (42%), Gaps = 4/282 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR GSFT AA  L ++QS++S+ I+GLE  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLYFVTVAREGSFTRAAALLGVTQSALSQAIAGLEARLEIRLLTRTTRSVSATAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +     + ++E    EL +   KP+G +RI     + +  L   LK  L  YPDI 
Sbjct: 65  ERLLKAIGHRFEEIEAELDELTQMRNKPAGTVRITCGEHVLRTTLLPKLKPLLRDYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  ++    DI  D  D  +RL   I    +       + M   A+P Y      P + 
Sbjct: 125 VEFDVNYGFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVASPAYFAARPVPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  HN I         +  +++     R         L  N+   ++   + G GIA 
Sbjct: 185 RDLLSHNCINQRMQTAGGLYVWDFERRGKRQNVRVN-GQLIFNTSPGMVDAALAGLGIAF 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           LP+     +     LVR++ +        Y  YP   + +  
Sbjct: 244 LPEDEFAPHIKEGRLVRVLNEWCASFPGYYLYYPSRRQPSPA 285


>gi|206558590|ref|YP_002229350.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198034627|emb|CAR50494.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 307

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 137/291 (47%), Gaps = 11/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L +F     +GS + AA +L L +S++S++++ LE  +G +L +R +R   LT  G
Sbjct: 7   NLNDLYLFVQAVDAGSMSAAARRLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLTPVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++          + ++ +  +   + +P+G +RI +++ + Q++L   L    + +P + 
Sbjct: 67  AEFFEHARAAVIEADSARDAVLRQAAEPAGVVRITSSVPVAQHILAPCLPALAIAHPKLL 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+   ++ +DI+ +  D A+R    P+  S+L+QR L    +   AAP YL     P +
Sbjct: 127 LQIHASDRLVDIAQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPAYLARAGTPDT 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H+ +  G       + +      D     PR+  LQ +    ++Q    G G+A
Sbjct: 187 PADLAQHDGLHPGP------QPWRLQRGGDAVDVTPRL-RLQADESTLLLQAATAGLGLA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPD+I      +  LVR++      + T     P        ++A   F+
Sbjct: 240 CLPDWIAGAALASGTLVRVLPGWCAGTVTTTLLMPHRRGQLPGVRAAVEFL 290


>gi|28869851|ref|NP_792470.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969978|ref|ZP_03398111.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301384555|ref|ZP_07232973.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302062669|ref|ZP_07254210.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302132796|ref|ZP_07258786.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28853096|gb|AAO56165.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213925303|gb|EEB58865.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 301

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 133/296 (44%), Gaps = 8/296 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M++ + D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++
Sbjct: 1   MNYPNLDDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMGVVLLHRSTRQVSI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +++     +   ++    E+     +PSG LR+ ++  LG+  +   L E    Y
Sbjct: 61  TEDGERVYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGLGRRFVAPALSELAARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I+L + ++ +D+  +  D  IR+   I +  L  R L +      A+P Y++    
Sbjct: 121 PKLDIRLDIQDRLVDLIEEGVDLDIRVGNDI-APHLRARHLASNWRVLCASPAYVQQHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PLS+ EL  H+ +   +           L              L  N      Q+C+ G 
Sbjct: 180 PLSLAELANHDCLVIKERDRPFGIWH--LNGSQGAETVKVTGSLSTNHGEIARQWCLDGR 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+ L   + V+       LV ++ +    +  ++  +   L ++ K++    F+  
Sbjct: 238 GVLLRSLWDVRTDLAEGRLVPVLPEYRQDA-DIWAVHTSPLMSSAKVRVTVEFLRE 292


>gi|304396976|ref|ZP_07378856.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304355772|gb|EFM20139.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 305

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 127/289 (43%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   GSFT AA QLHLS SSIS+ ++ LE  + +KL  R  R + LTE G 
Sbjct: 4   LKGMSVFARVVELGSFTAAARQLHLSVSSISQIVAKLEDALQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +      +L   +  P G+LRI ++  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLAEATQVHEQLYAFNNTPIGELRIGSSSTMAQNVLAGMTSDMLREYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   ++ SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGVPAPDLIADGLDLVIRVGA-LKDSSLFSRRLGAMPMVVCAAKSYLTQHGTPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++D  + + +        E       V R   + R      N  L+++++   G+GIA +
Sbjct: 183 DIDNFSWLEYSVRPDNNFELIAPEGLVTRLSPQGR---FVTNDSLTLIRWLKSGNGIAYV 239

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V +  N   I        +    VY  Y E  K   K++   +++
Sbjct: 240 PMMWVINEINAGEIDILFPQYQSDPRPVYALYTEKDKLPLKVQVCIDYL 288


>gi|168230986|ref|ZP_02656044.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194469177|ref|ZP_03075161.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194455541|gb|EDX44380.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205334404|gb|EDZ21168.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 303

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARNPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++ F +F+  +
Sbjct: 240 LLPQWLVNTALEDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRTFIDFLRSQ 293


>gi|13472703|ref|NP_104270.1| LysR family transcriptional regulator [Mesorhizobium loti
           MAFF303099]
 gi|14023450|dbj|BAB50056.1| transcriptional regulator (LysR family) [Mesorhizobium loti
           MAFF303099]
          Length = 295

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 123/291 (42%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  VAR  SF  AA +  ++ S+IS  I  LE  VG++LF+R  R ++LTE G
Sbjct: 5   ELAELSTFLAVARHRSFKQAAVERGVAASAISHTIRSLEERVGVRLFHRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++        + ++E     L      P G +RI     +   +L   +   L   P + 
Sbjct: 65  ARFLSELHPAFGQIEKALDSLNSFRGTPFGTVRINVPNSIAPFVLHDVMGPLLKQNPGLH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++  ++ +DI     D  IR  + +    +      T+      +P YL   + P+  
Sbjct: 125 LDIVATDRLVDIVEGGFDAGIRFGERLMQDMIAVHIKPTLRFSVVGSPDYLAGRKTPVMP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L +H  I +          +NW    +    +  ++  + ++    +++  + G G+A
Sbjct: 185 ADLREHACIRYRY---PSGAIYNWQFEKNGEAVDVEVNGPVTLDDQELMVEAALQGCGLA 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + D  V  +     L+R ++D   P   ++  YP     +  L+A  + +
Sbjct: 242 YVWDNRVMRHLASGALIRCLDDWCAPDDGLFLYYPSRRYLSAGLRALIDML 292


>gi|13475773|ref|NP_107340.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14026529|dbj|BAB53126.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 302

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 126/290 (43%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + VF  VAR  +F  AA  L ++ S++S+ +  LE  +G  LF R  R + LTE G 
Sbjct: 12  LEGVEVFLAVARHRNFRRAAADLGVTPSAVSQAVRALEARIGAALFVRTTRSVGLTEAGQ 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        + ++       ++   +P+G LR++    +   +L+  +  F   YP++++
Sbjct: 72  RFLDRAGPGFEEIVAAGEAARDIGQRPTGLLRLSVPRAVVPLILEPVIASFCQAYPEVEL 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D++    D  IRL + I +  +  R   +       +P YL     P  I 
Sbjct: 132 EIAASDEMVDLATGGFDAGIRLGQFIATDMVAVRLTPSFRFVVVGSPDYLDRHGRPERID 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H  +    L         W         E  +S  L  + Y +++   + G G+A 
Sbjct: 192 DLRNHACL---RLRRSNGAIAPWTFVDGNEAIEAMVSGPLIAHDYPTLLGAAMRGIGLAQ 248

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P  + +   +   L  +++ +   +  V+  +P   +   KL+AF + +
Sbjct: 249 IPRPVAEGPIEQGKLEPVLDTIAATTPGVFLYHPGKRQILPKLRAFIDHL 298


>gi|183596306|ref|ZP_02958334.1| hypothetical protein PROSTU_00041 [Providencia stuartii ATCC 25827]
 gi|188023910|gb|EDU61950.1| hypothetical protein PROSTU_00041 [Providencia stuartii ATCC 25827]
          Length = 306

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 135/292 (46%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +   GS + AA++L +S++ ++R ++ +E   G++L  R  R L+LT 
Sbjct: 1   MDRLTAVQVFISIVEHGSMSAAADKLDMSRAMVTRYLAEMEQWAGVRLLNRTTRRLSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +++   ++     T  ++ Q  + + +G +RI+    +    L   + EFL  YP+
Sbjct: 61  AGEGVYQQALKLNALSLTLPVQQQHDATQLTGLVRISCAQSIASQALSVAITEFLQHYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L + NK +++  D  D AIR+   ++  SLI + L T H    AAP + K+ + P+
Sbjct: 121 MAIDLSITNKAVNLIEDRIDLAIRITNQLE-PSLIAKPLSTCHSVICAAPSFFKDKKIPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L     +T+                   P        L  +  + + Q  + G+GI
Sbjct: 180 KPEDLAPLECLTYNFFGRSLWR----FEKDGEPFSVLVGGRLSADESVFLAQAALNGAGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+ P   VK   ++  L++++ D +     +Y  Y         L+A  +F+
Sbjct: 236 AMQPYLSVKKYLESGELLQLLPDYVPQPLGIYAVYASRQNMPTTLRAVLDFL 287


>gi|186471442|ref|YP_001862760.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197751|gb|ACC75714.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 308

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  VA+  SF  AA +L ++ S+IS+ I  LE  +G  LF R  R + LTE G 
Sbjct: 12  LDGVEAFLTVAQHRSFRRAAAELGVTASAISQAIRVLEARIGAALFIRTTRSVGLTEAGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        + +L       +    +P+G LR++    +   LL+  +  F   YP++++
Sbjct: 72  RFLSRAKPAFEELVAASEVARGLGQRPAGLLRLSVPRAVVPVLLEPLIASFCQAYPEVEV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++    K IDI+ +  D  IRL + + +  +       +H+    +P Y      P    
Sbjct: 132 EIDATEKLIDIAAEGFDAGIRLGQFVAADMVAVALTPPLHLVVVGSPDYFATRGRPQHPD 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L +H  + +            W    +    E  +S     N + +++   V G G+A 
Sbjct: 192 DLRQHACLRWR---RSGGALAPWSFNENGEAIEIAVSGPFIANDFPTMLGAAVEGVGLAQ 248

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP  I ++      L++++E        V+  YP+  +   KL+AF + +  +
Sbjct: 249 LPGPIAREALRAKKLLQVLEPFAPVVPGVFLYYPDRRQIMPKLRAFIDHVKSR 301


>gi|238764778|ref|ZP_04625720.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           kristensenii ATCC 33638]
 gi|238696976|gb|EEP89751.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           kristensenii ATCC 33638]
          Length = 298

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L++S++ ++R ++ +E   G +L +R  R L+LT  G     
Sbjct: 8   EVFVAIVERGSMIAAAEALNMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTHAGESTLT 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +   + + +  G LRI+ +  LGQ+ +   + ++L  +P + + L +
Sbjct: 68  RCRHMLEFAKDMDLVEGQENDELRGLLRISCSQSLGQSAVAIAVTDYLRRHPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           DN+ +++  +  D A+R+   +   +LI R L   H    AAP YL     P S  +L  
Sbjct: 128 DNRTVNLVEERIDLALRITNDL-DPNLIARPLSICHSVVCAAPSYLSAKGIPKSPPDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                            L  N  + ++   + G+GI L P Y 
Sbjct: 187 HNCLTYSYFGKSLWH----FDHQGIKSSVAVGGNLSANESVVLLSGALDGAGITLQPSYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                    L+R++ D    +  +Y  Y    +    L++  +F+  
Sbjct: 243 AAPYIARGELIRLLPDYQPQAMGIYGIYTSRRQMPATLRSMLDFLVE 289


>gi|330503049|ref|YP_004379918.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328917335|gb|AEB58166.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 316

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 4/299 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +  F   A +GSF  AA +L LS +++ + ++ LE+ +G++LF R  R LTLTE G
Sbjct: 3   TLSSIESFVRTAEAGSFAEAARRLGLSPAAVGKNVARLESSLGVRLFLRSTRRLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     S     ++     L  S  +P+G L+++  +  G++ +  +L +FL  YP I 
Sbjct: 63  ERFLAEVSGGLANIQGAVANLASSQGQPAGTLKVSMGVAFGRDYILPHLTDFLARYPAIT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+     D AI     +   + I R+L   H    AAP YL         
Sbjct: 123 PDWHFDNRAVDLIGGGFDAAIGGGFELPPGA-IARQLAPAHRVLLAAPVYLAKHAPITRP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H+ I         +  +      D+         + +N   +     + G GI L
Sbjct: 182 EDLTQHDGILIRSPQTGRVRSWPLRTRDDQQATLELKQRMTMNDPEAACHAALQGLGITL 241

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +            ++  ++ D    + ++   +        K + F +FI  + R+ ++
Sbjct: 242 VSTVHALPYLQRGSMQWVLPDWYVDTGSLSLYFSAQKLLPAKTRVFIDFIVERFREHRW 300


>gi|261823436|ref|YP_003261542.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261607449|gb|ACX89935.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 295

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 135/295 (45%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F   +  GSF  AAE L +S   +++Q++ LE  +G++L  R  R  +LT+
Sbjct: 1   MDRLTSMNTFVKASELGSFAAAAEVLGISPQMVAKQVAWLEASLGVRLLNRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     V  + E      +E  V PSG +++   +  G +LL   +  +L  YPD
Sbjct: 61  IGLRYYERCKVVLAEAEDADAIAREMQVTPSGIIQVNAPVTWGSHLLAPFITHYLARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            QI L L+++ +D   +  +  IR+ + +  SS++   L    + A A+P YL     P 
Sbjct: 121 TQIALTLNDRMVDPIEEGFEVIIRIGE-LADSSMVAWPLQPYSLIACASPDYLVREGVPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +   L +H  + +G  +        W+   D    E R    L  N + +++   + G G
Sbjct: 180 TPSSLARHASLIYG--VRTAAASCRWVFQKDGKTEEVRPEGRLFANDWNALLHAAIEGYG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I L P+ +++   D   LV+++ D   P+  V+   P   +   K+K F + +  
Sbjct: 238 ITLGPEVVLRKEIDRGRLVQVLSDYNGPARPVHVMVPVGRRAAVKVKTFVDAVRA 292


>gi|261378495|ref|ZP_05983068.1| transcriptional regulator, LysR family [Neisseria cinerea ATCC
           14685]
 gi|269145038|gb|EEZ71456.1| transcriptional regulator, LysR family [Neisseria cinerea ATCC
           14685]
          Length = 303

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL +R++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADSLGISTAMASKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    +L+   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSLICNWLAEYRERYPEVTLELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L     P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLMRNGVPKTPEEVM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +       + ++      +  +         ++ ++ L + +    G+ I   P +
Sbjct: 186 MLPAVLPTYTNQQKLDITR--KSDGKKYQLELTPVIRTDNTLMMREMIKAGACIGYQPFW 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            V+ +     LVR++ +    +  +   Y +    + K+++F +F+  K  +
Sbjct: 244 AVEHDLRCGTLVRLLPEYTVLTDRLNAVYADRAFLSAKVRSFIDFLNEKIEN 295


>gi|285018474|ref|YP_003376185.1| LysR family transcriptional regulator [Xanthomonas albilineans GPE
           PC73]
 gi|283473692|emb|CBA16195.1| putative transcriptional regulator, lysr family transcription
           regulator protein [Xanthomonas albilineans]
          Length = 311

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LE+++G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLESDLGVRLLQRSTRRFAVTDLG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +HR    +  + +  +  +   SV+P G +R++  + L Q  L   L  FL  YP ++
Sbjct: 63  MNVHRHAQMMLAEAQAAREVVDRLSVEPRGLVRVSVPVSLAQMQLPKLLPMFLDRYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +DI  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 123 LQLNISNRRVDIINEGYDVALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKE 182

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +EL  H  ++   D + +  E       V R   +PR++      +  +      G G+
Sbjct: 183 PEELASHVTLSISEDEVRQHWELHGPAGEVRRVDLQPRVAGF---DFPLLQSMVKDGFGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LLP+ +  +   N  L  ++     P    +  +         ++ F +F+  
Sbjct: 240 TLLPETVCAEAVRNGELEVVLPKWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 293


>gi|78067489|ref|YP_370258.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968234|gb|ABB09614.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 310

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 120/299 (40%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE  V  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAAVATRLFDRSTRQLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQ       G++R++ T D G+  L   L EF   YPD
Sbjct: 61  EGRLYLNGCRQALQALDDANALLQAGRNVVGGRVRLSATSDFGRRRLLDWLDEFTARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L   +  +++  D  D AIR   P    +LI R+L        AAP +++    P 
Sbjct: 121 VTFSLTASDSTVNLWQDEIDLAIRFAAP-PDGALIARRLAADRRVPCAAPSFIERHGVPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPHDLARFPCNVITVASGPMNTWRFTRGDDTQTCTVPLGTAFETNDGGLAREWALRGRGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
            L   + V D+     L  ++ D    S  ++  YP       +++   +F+  + AR+
Sbjct: 240 VLNSIWDVADDIRAGRLKVLLPDWRHQSAPLHAIYPGKRYMAPRVRVLLDFLAERFARE 298


>gi|221369388|ref|YP_002520484.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
 gi|221162440|gb|ACM03411.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
          Length = 315

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 131/293 (44%), Gaps = 6/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F ++AR  SF+  A+ L LS S++SR+++ LE  +G++L  R  R ++LT +G   
Sbjct: 5   DLSFFVMLARRESFSATAQDLGLSASAVSRRLARLEDRLGVRLLNRTTRKVSLTSEGEAY 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  ++   +  L +   +P+G LRI  T+  G+  L   +  F  ++P +++QL
Sbjct: 65  YGAALRLLDEIADLEHNLSQGRDRPAGLLRINATLGFGRTHLAPAIARFRRIHPAVEVQL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  +++  +  D  IR   P     ++ R L        AAP YL+    P S+ +L
Sbjct: 125 LLTDAPLNLVEEGIDLGIRFGAP-PFGRMVMRLLQRNRRFLCAAPSYLEARGVPQSLTDL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ I          + + +    +          L  N     + + + G GI L  +
Sbjct: 184 QQHSCIVLRQD-HDAYDVWRFDDIGEASPSAKVSGELSTNDGEIALAWVLDGQGIMLRSE 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + +  +     L  ++      +  ++  YPE    + K++ F + +    RD
Sbjct: 243 WDIAQHVREGRLRLLLPHYRQ-TANIHAIYPERHNLSAKVRVFADHLAAHVRD 294


>gi|254523510|ref|ZP_05135565.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721101|gb|EED39626.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 294

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 121/292 (41%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VAR  SF  A  +L LS S++S  I  LE  +G+ LF+R  R + LTE G
Sbjct: 5   NLSHLAAFAAVARHRSFRRAGAELGLSTSAVSYAIRALEERLGVGLFHRTTRSVALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++     E+ +    P+G LRI  T       L   L  FL  +PD++
Sbjct: 65  QRLLERLQPALGQVHDALEEMNQFRAAPAGLLRINATRAAVATQLGPRLARFLRAHPDVR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI  +  D  +RL + +    +       +      +P YL+    P   
Sbjct: 125 VELTENDGLVDIVAEGYDAGVRLHEFVPEDMVAVPMGPPLRGLIVGSPDYLRRHPAPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I F        +         + +       L +    +++   + G G+A 
Sbjct: 185 RDLAAHECIRFRFASGHLYKW--QFERAGQALEIDVPGRLTLGEQGTVVGAVLDGIGLAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + +   +   D+  +V +++D   P       YP+  +  G L+AF + +  
Sbjct: 243 VLEDTARPYIDSGQMVAVLKDWSEPFAGFALYYPKQRQMPGALRAFVDMLRE 294


>gi|206576853|ref|YP_002238916.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|290509881|ref|ZP_06549252.1| transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206565911|gb|ACI07687.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|289779275|gb|EFD87272.1| transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 294

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 8/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+      +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKHRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   + S  +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIIAERFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I +          + W   VD + I  P              +   LG G+A
Sbjct: 186 ADLVAHPCIAYQF---GDGSLYAWELNVDGKKITHPPQGQWAFADSYMEAKAARLGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P+ ++ D+     L+R+++         +  YP     +  L+A  +
Sbjct: 243 YVPEELITDDLAQGTLIRVLQRYSQRLEGSFLYYPH-RNVSPALRAVID 290


>gi|170735037|ref|YP_001774151.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821075|gb|ACA95656.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 301

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +  +S  +  LE ++G+ L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMASFTRAAESLGIQKGRVSTVVRTLERDMGVALLHRTTRRVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   +++  +++  Q           G+LR+    +L ++++   L + +  +PD++
Sbjct: 63  RAFYARATDLLAEVQELQSMFSGRGASLRGRLRVDMPTELARSVVVPALPQLMAAHPDLE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  PI   +LI R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLVREGFDCVIRLG-PIADETLIARPLGRLRMTNAASPDYLARHGVPHTL 181

Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L    H +I +   +      + +    D     P  S +QVNS  +     + G G+
Sbjct: 182 ADLHSQGHKMIHYTLTLGARHPGWEYPDG-DGYAWLPLPSAMQVNSVQTYHAAGLAGIGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                  +    ++  LV ++ D+                 + +++AF ++I
Sbjct: 241 IQAGYSALAHHIESGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFMDWI 292


>gi|161521561|ref|YP_001584988.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352271|ref|YP_001947898.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221210885|ref|ZP_03583865.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans
           CGD1]
 gi|160345611|gb|ABX18696.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336293|dbj|BAG45362.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221169841|gb|EEE02308.1| HTH-type transcriptional activator TtdR [Burkholderia multivorans
           CGD1]
          Length = 302

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 122/275 (44%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 87  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L        AAP YL     P +  EL +HN I    GD      
Sbjct: 147 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGTPGTPHELTRHNCIGIRQGDENYGIW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
                               L  N     +++ + G GI +  ++ ++D   +  LV ++
Sbjct: 206 RLTTGRGAARHTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADGRLVVVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +D  TPS  +Y  Y +  + + +++AF +F+  + 
Sbjct: 266 QDYETPSADIYAVYAQRHQMSTRIRAFVDFLAAEL 300


>gi|154707716|ref|YP_001424195.1| transcriptional regulator, LysR family [Coxiella burnetii Dugway
           5J108-111]
 gi|154357002|gb|ABS78464.1| transcriptional regulator, LysR family [Coxiella burnetii Dugway
           5J108-111]
          Length = 294

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 133/294 (45%), Gaps = 10/294 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+         F  VA SG FT AA+QL +S++++S  I  LE  +   LF R  R + L
Sbjct: 1   MTLPSLHHFEAFLCVAESGGFTPAAKQLGISKAAVSHTIRLLEESLRTPLFVRDTRNIRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE+G  L      +  +L+  +  +   +  PSG LR++      +  L   L+ +   +
Sbjct: 61  TEEGELLFSQCKRLKEELDAARNLVAGFNSSPSGTLRMSCNPYFAETHLFDLLQTYTQRF 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P ++++L+++ +  ++  +  D    +  P   S ++ + +        A+P YL     
Sbjct: 121 PKVKVELLVEERMPNMEREKIDIVFGINWPAP-SGVVAKTIDKTRYVLCASPKYLNKFGI 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +++ L++H  I      P+     N +  +   +       L++N+   I +  + G 
Sbjct: 180 PKTVKALEQHRYIPHLGRSPE-----NVIMNLKNKVTLNLTPQLKLNNAHLIKKCALNGL 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  L DY+VK+   N +LV +++D       +Y  Y +      K++ F N +
Sbjct: 235 GIIQLHDYMVKEELANGSLVEVLKDHFQAEIPIYIYYQKHRFVQPKVRQFINLV 288


>gi|28868429|ref|NP_791048.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967126|ref|ZP_03395275.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301386289|ref|ZP_07234707.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061418|ref|ZP_07252959.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302132976|ref|ZP_07258966.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28851667|gb|AAO54743.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927968|gb|EEB61514.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|331015289|gb|EGH95345.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 315

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 13/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSSVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILASVEEAEAEASDAHARPAGQLKVHSMPGVGQHYVIDAIARYRRNHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K      
Sbjct: 121 VAFDLTMTHRVPDLLEEGFDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
              +L  H  +    L+        WL   D P G+  +    S L VNS  ++      
Sbjct: 181 KPADLLNHACL---RLVSPVFPLDKWLF--DGPEGQEMVTINSSPLLVNSADAMKTAISS 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI +LP Y   +   N  LVR++ D  +    +Y  YP       K++ +  ++
Sbjct: 236 GMGIGILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPSRQYLDAKIRTWVEYL 291


>gi|66045459|ref|YP_235300.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256166|gb|AAY37262.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 317

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E+  G +L +R  R L LT  G     
Sbjct: 29  RVFIAINDRGSLIAAAEALDMSRAMVTRYLAQMESWAGARLLHRTTRKLGLTAPGQVTLL 88

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +  +L  YP     L++
Sbjct: 89  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSADLLI 148

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        AAP YL     P   QEL  
Sbjct: 149 GNEAVDLVSERIDLAIRITNQL-DPNVIARPLGQCASVVCAAPAYLAVHGTPSRPQELTA 207

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E          P+  P    L  N  + +++  V G+GI+L P + 
Sbjct: 208 HNCLTYSYFGKSLWE----FTRQQMPLSVPVGGNLSANDSVVLLEAAVAGAGISLQPVHS 263

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+ +M +    +  ++  Y      +  L+ F +F+  
Sbjct: 264 AAPLIASGKLIALMPEYQPRALGIHAIYTSRHHQSATLRTFLDFLTE 310


>gi|329298649|ref|ZP_08255985.1| LysR family transcriptional regulator [Plautia stali symbiont]
          Length = 291

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 140/300 (46%), Gaps = 17/300 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++LR +  V  +GS T AAEQL  + S ISR +S LE+++   L +R  R L LT
Sbjct: 1   MKIILEELRAWVAVVDTGSITAAAEQLDQTSSGISRALSRLESKLQTTLLHRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   +E  +  + +    PSG+LR+        +++   + EF   YP
Sbjct: 61  EEGLIFLDHARQILASVEQAEEHIAQRRDMPSGRLRVNANTPFTLHVIVPLVAEFCARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  D+  ID+     D AIR+ + ++ S+L  R L         +P YL+    P
Sbjct: 121 QIQLELNTDDIVIDLLEQQTDIAIRIGE-LRDSTLRARVLG--------SPAYLEKAGAP 171

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+++L  H L+ F  L    +    W    +    +P    L  +S  ++ Q  + G  
Sbjct: 172 QSVEDLLTHQLLGFSQLDAHNVWPV-WQREGEFLRIKP---TLCASSGETLRQLALAGQS 227

Query: 241 IALLPDYIVKDN---PNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L D++ +++     LV+++E D       ++  Y      + ++  F +F+  K ++
Sbjct: 228 IVRLSDFVSREDRASGRLVQVLENDTRELRLPIHAVYYRNQSLSSRITCFLDFLREKIQE 287


>gi|311106305|ref|YP_003979158.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760994|gb|ADP16443.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           94 [Achromobacter xylosoxidans A8]
          Length = 301

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 123/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F        F  A   L + +S +SR+++ LE  +G++L  R  R   +T+ G
Sbjct: 3   DLNDLFYFVQTVEHQGFAPAGRALGMPKSRLSRRLALLEERLGVRLIQRSTRHFMVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  Q  +  + V+P G +++   I L    + G L +F+L YP + 
Sbjct: 63  QTYYERCKAMLAEAEAAQEVIDAAQVEPRGVIKLTCPIALLHTHVGGMLADFMLKYPRVV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           IQL   N+ +D+  +  D AIR+R  P++ S L+ R L        A+P     C +P +
Sbjct: 123 IQLEATNRRVDVLGEAVDVAIRVRPPPLEDSDLVMRVLADRGQSLVASPALAAECGQPAT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G   P      +      +         +     +++    + G G+ 
Sbjct: 183 PDDLGAWPSLALGS--PNQAYRLDLYKQDGQQATVSLAPRMITTDMIALRNAAMAGVGVV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V++      LVR++ D       ++  +P        ++A  +++  +
Sbjct: 241 QLPTLMVREQLQAGQLVRVLPDWAPRRELIHAVFPSRRGLLSSVRALVDYLAER 294


>gi|218682193|ref|ZP_03529794.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 894]
          Length = 298

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 131/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  VA   SFT AA +L ++QS++S  +  LE  +G++L  R  R +  TE G
Sbjct: 5   NFNELLLFLAVAEERSFTRAAAKLGVAQSTLSYAVKELEARMGLRLLTRTTRSVATTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    ++E     L     KP+G +RI  +    ++++   L   L  YPDI+
Sbjct: 65  ERLRQSLAPRISEIEADIEALMAYRDKPAGTVRITLSNHAMESVVWPKLAPILGEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +DN   +I  D  D  +RL + ++   +  R      +   A+P Y  +   P + 
Sbjct: 125 LELSVDNSFRNIVEDGFDAGVRLGESLEKDMVAVRIGPDWRLVVVASPDYFNSRPVPTTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL +HN I     + +    + W    +      R+   L  N+   ++   + G GIA
Sbjct: 185 QELMQHNCI--NRRLDRIGGLYAWEFEKNDEEVRVRVEGQLTFNTDREMVGAALQGYGIA 242

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+  V  +     L  I+ED        Y  YP   +N          +  +
Sbjct: 243 FVPESYVATHLAERRLTLILEDWTPKFAGYYLYYPSRRQNLPAFSVIMEALRER 296


>gi|323499143|ref|ZP_08104121.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315776|gb|EGA68809.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 307

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 132/290 (45%), Gaps = 10/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +       E   +P+G L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 72  YDQSIAMVNAAQQAVELSTEDHTEPTGALTVAAPEAFLNSVLQPFVLPFLQRYPNIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+     D A +L       +L+ +++   ++   A+P Y+     P    +L
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDK-PDENLVLKEISKTNLVLCASPAYISQRGMPQHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D H+ I   +     +  F      +            +N     +   +   GI +  D
Sbjct: 191 DTHDCIYLAENDKDNIWSF---FKDEAFYSIAVSGRYAINHSQMRLNGVMADLGIGIFHD 247

Query: 247 YIVKDN---PNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           ++VK++    ++V ++ D +  S     +   YP+      +L+ F +F+
Sbjct: 248 FVVKESLERGDVVEVLPDWMIKSNYHGAIAMQYPQTKYMPARLRVFIDFV 297


>gi|307305190|ref|ZP_07584939.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306902530|gb|EFN33125.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 301

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 135/295 (45%), Gaps = 10/295 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D  D++++F  +    SF  AA  L L++S+ +  I  LE +VG++L  R  R +  T
Sbjct: 4   AMDRLDRMQLFIRIVERRSFAAAASDLGLARSTATEAIKQLEHDVGVRLLERTTRHVAPT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  ++    +  +++  +   ++      G LR+     L +  L   L EFL  YP
Sbjct: 64  LDGAAFYQRCIAILAEVDEAENAFRDMQA--RGLLRVDAHPLLTRTFLLPRLTEFLDRYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +Q+   ++ +D+  +  DC IR  + I  S LI R+L  I     A+P Y++    P
Sbjct: 122 LLDLQIGQGDRLVDLVREGIDCVIRAGE-IADSGLIMRRLGMITEITCASPAYIERHGIP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            S   +D H  + F  +  +  +      T+   +    + C L VN+  ++    + G 
Sbjct: 181 HSPDAMDGHRAVGF--ISSRTGQIMPLEFTMGSSVRYVTLPCRLTVNNSDTMNDLALRGF 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+   P Y ++   D   LV ++ +   P   +   YP+  + + +++ F +++ 
Sbjct: 239 GLIQAPRYRLQRDLDEGGLVEVLAEFPPPPTPLSALYPQNRQLSPRVRVFLDWVV 293


>gi|171318970|ref|ZP_02908099.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095813|gb|EDT40763.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 306

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 121/275 (44%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 31  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 90

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 91  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 150

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L        AAP YL     P +  EL +HN I    GD      
Sbjct: 151 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGAPGTPHELTRHNCIGIRQGDEGYGIW 209

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
                               L  N     +++ + G GI +  ++ ++D   +  LV ++
Sbjct: 210 RLTGGRGAARNTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADGRLVVVL 269

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D  TP+  +Y  Y +  + + +++AF +++  + 
Sbjct: 270 PDYETPAADIYAVYAQRHQMSARIRAFVDYLAGEL 304


>gi|241204924|ref|YP_002976020.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858814|gb|ACS56481.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 295

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 137/296 (46%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+     A SGSF  AA++L +S + + R+I  LE E G+KL  R  R   LTE G
Sbjct: 3   DLLNLQTLIAAATSGSFAAAAKRLGISPAMVGRRIQALEQEYGVKLIERTTRTQRLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+     + +  +LE      +  +   SG+LR++    LG   L   + E    +P + 
Sbjct: 63  SRFLVKANRIIDELEELNDISRPDAEAMSGRLRLSAPTTLGIKRLAPVMAELAERHPALS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++++D+  +  D AIR+ + ++ SSLI R++ + H    A+  YL     P   
Sbjct: 123 VELNLSDRNVDLVAEGYDLAIRIGE-LKPSSLIARRVGSYHFVCRASSVYLDRFAVPERP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++     I   +L+P+  +++ +               +++++  ++    + G+GI  
Sbjct: 182 EDIRLGRCILNLNLVPR--DEWPFETKGGEGFTVGVRGNIEIDNGEALRMAALAGAGIIY 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +P  +V +   +  LV ++         ++  +P      G++ A  + I    RD
Sbjct: 240 VPVDLVAEDIADGRLVEVLAGWRKLVLPIHAIHPSRRFVPGRVGAIIDAIARGLRD 295


>gi|311105674|ref|YP_003978527.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760363|gb|ADP15812.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           67 [Achromobacter xylosoxidans A8]
          Length = 303

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 127/294 (43%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ AAE L + + +++  +  +E  +G +L  R  R + LT 
Sbjct: 1   MDRFQEMQVFVRIAERRSFSKAAEDLQIPRPTVTNLVKRMEARLGARLLERTTRQVRLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   LE       +    P G LR+     L +  +   L  FL  YPD
Sbjct: 61  DGEAHYRRCVRLLADLEEADGAFLD--TSPKGLLRVNAQGTLARFFVMPGLPAFLQRYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL  D++ +D+  +  DC +R    +Q SSL+ R++  +     A+P YL    EP 
Sbjct: 119 IVLQLGEDDRLVDLVREGVDCVLRTGA-LQDSSLVGRQIALMPQVTVASPAYLARFGEPR 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L+ H  + +           +++         PR + + V          + G G+
Sbjct: 178 RLEDLEGHCAVDYLSSATGRSLPLDFMVDGRNVQMRPR-AVVSVTGAELYTGAALAGLGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V+       L  ++ D       V   YP+  + + +++ F  ++  
Sbjct: 237 VQVPRYRVERELAAGELKIVLPDAPPAPMPVSVLYPQNRQVSARVRVFTQWLAE 290


>gi|190891394|ref|YP_001977936.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190696673|gb|ACE90758.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 295

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 121/293 (41%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  VAR  SF  A E+  ++ S++S  +  LE  +G++L  R  R ++LTE G
Sbjct: 5   ELSELAAFAAVARHKSFRKAGEERGVTASAVSHAVLNLEDRIGVRLLNRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L         ++      L      P GK+RI     +G  ++   +   L   P++Q
Sbjct: 65  ELLVSHLDPALGEMAAALDALNRYRDTPFGKVRINVPNSIGPFVIGRVIAPLLQRNPNLQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +DI  +  D  IR  + +    +  R    I +    +P Y +   +P + 
Sbjct: 125 LEINATDRLVDIVEEGFDAGIRFGERVTEGMIALRIKPRIRLVVVGSPAYFETRPKPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I   ++ P             + +       L ++ +  + Q  + G G+A 
Sbjct: 185 HELKGHLCI--QNMFPSGARYAWEFEKDGQTVSFQPTGPLSLDDHELMTQAALGGVGLAY 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +  V+       L+++++D   P   +Y  YP     +   +A  + I  +
Sbjct: 243 IWEPRVEKAIAGGELIQVLDDWCQPEEPLYLYYPSRRHMSAGFRAVIDAIRAE 295


>gi|161521329|ref|YP_001584756.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345379|gb|ABX18464.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 328

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 139/291 (47%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L  F  VAR  +FT AA Q+ +SQS++SR ++GLE  +G++L  R  R ++LTE G
Sbjct: 32  DFNDLVGFMTVARERNFTRAAAQMGVSQSALSRTVAGLERRMGLQLLTRTTRSVSLTEAG 91

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  + ++E     L+  + +PSG +RI TT    ++ +   L+  L  YP+++
Sbjct: 92  DRLLSAIAPRFEEIEAEVDSLRAMTNQPSGTVRITTTDYAAKSYVWPRLQSLLRQYPELK 151

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+ D    DI  D  D  +RL   +    +  R    + M    +P YL++     + 
Sbjct: 152 IELVNDYGLSDIVADRYDIGVRLGDQVAKDMVAVRIAPDMTMTVVGSPSYLQSKPHARTP 211

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  HN I     +P       W     R   + R+   L  N+   +++  + G G+A
Sbjct: 212 QDLTLHNCINL--RLPTRESLLPWELRKGRRELKVRVEGQLTFNNVYQMVEAALGGFGLA 269

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P  +V+D      L  ++ED        +  YP   K++  ++     +
Sbjct: 270 YVPKDLVEDKVRAGRLCWVLEDWYPTFVGHHAYYPNRRKSSRAVELVIEAL 320


>gi|86156977|ref|YP_463762.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773488|gb|ABC80325.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 322

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 130/288 (45%), Gaps = 7/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L+VF  VA +G F  A  +L LS  +++R ++ LE  VG +LF R  R +  TE G 
Sbjct: 4   LHQLQVFVAVADAGGFARAGARLRLSPPAVTRAVAALEARVGARLFNRTTRTVRPTEAGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       V   LET + E       PSG L +  ++  G+  L   ++ FL   P +  
Sbjct: 64  RFLEPARRVLADLETAEREAAGEGAAPSGHLTLTASVTFGRWALAPVVRAFLRAQPGVGA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L ++ +++  +  D A+R+ + +  S L+ RK+  I     A+P YL+    P S  
Sbjct: 124 TLVLVDRVVNLVEEGVDVAVRIGQ-LPDSDLVARKVGEIRRVLVASPAYLRAHGAPASPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H  I F  L P     F   A   R +  P    L VN  L+ +     G G+ L 
Sbjct: 183 RLREHAAIAFTGLQPGREWRF---ADGGRQVAVPVAPRLVVNDALAALDAAEAGDGLTLA 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y+V +      LV ++     P   V   +P A     K++AF +F
Sbjct: 240 LSYMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDF 287


>gi|153802478|ref|ZP_01957064.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|124121997|gb|EAY40740.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
          Length = 312

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+   +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLVQRGTPVHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALTAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|107026220|ref|YP_623731.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692595|ref|YP_838128.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105895594|gb|ABF78758.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650595|gb|ABK11235.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 130/293 (44%), Gaps = 11/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +G+FT AA  L L+ +++S  I  LE E+ +KLF R  RG++LTE G +  
Sbjct: 10  LHVFMTVATAGNFTRAAAALGLTPAAVSLAIGQLEGELNVKLFNRSTRGVSLTEAGQRYW 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R T   Y ++   + EL+++  +P+G LR+         ++   L  F   YP +++++ 
Sbjct: 70  RQTEPAYRQVMQARDELKDARSEPNGLLRVTALPLARLLVIAPVLATFRERYPKVRLEIR 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            DN+ +DI+ D  D  IRL   +Q   +  R    +     A+P YL     P SI  L 
Sbjct: 130 YDNELVDIAKDGFDAGIRLADRLQPGMIGVRIAPALTCALVASPAYLARHGTPESIAALG 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I F       +  +  L    R +          N   +++    +G GIA     
Sbjct: 190 RHACIRFRFAESGRLHKW-LLHDGRRDVDLDPDGVFVTNDDDAVIDAARVGVGIAFA--- 245

Query: 248 IVKD-------NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            V++       +  LV ++         ++  Y        KL+AF + +  +
Sbjct: 246 FVRERIEQDLHDGTLVEVLPGACRTLPPMWLYYVNRKHVPAKLRAFIDVLRER 298


>gi|325168325|ref|YP_004280115.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064048|gb|ADY67737.1| transcriptional regulator, LysR family protein [Agrobacterium sp.
           H13-3]
          Length = 306

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 137/297 (46%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +   LR+   +  +GS + AA++L  S  ++SR+++  E  +G++L  RHAR   LT
Sbjct: 1   MADEISDLRLLVALVSAGSLSAAAQRLDSSLPAVSRRLAAFEQRLGVRLIERHARRFNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+ LH     +   ++  + E       P G++RI++ + +G+  +   + EF   YP
Sbjct: 61  DEGAALHERAFSILADIDEAEAEASAGKGTPRGRVRISSPVHVGRTQIAPLVAEFRDRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI I+L+L +  +D++ D  D  + +  P   S ++ RKLV+      AAP YL+    P
Sbjct: 121 DITIELMLSDAVVDVAEDDIDIVLHVGVPTAQS-VVTRKLVSGRRIVLAAPAYLERFGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
               +L KH  I    L+        WL      + E  +S  L   S   + ++ + G 
Sbjct: 180 AHPDDLLKHECIL---LMRGRRVFNRWLFKEANGVREVHVSGGLLSTSSEVVYEWILEGR 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI +   + V+D+     L   +         +Y  Y        +++   +F+  +
Sbjct: 237 GIGIKGSWDVEDDLASGRLTECLAPYACDPADLYLVYASKRHLPLRVRVLIDFLSSR 293


>gi|262402979|ref|ZP_06079539.1| transcriptional regulator [Vibrio sp. RC586]
 gi|262350478|gb|EEY99611.1| transcriptional regulator [Vibrio sp. RC586]
          Length = 312

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPTGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P    +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPTHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +   +     +  F   A  D            VN     +       GI +  D
Sbjct: 191 AEHDCLYLAETDKDHIWTF---AKGDETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 248 FVVQDALAAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPTRLRVFIDFVLE 299


>gi|222109838|ref|YP_002552102.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221729282|gb|ACM32102.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 300

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR F  VA + SFT AAE+LH+++  +S QI  LE  +G  LF+R  R +TLT+ G
Sbjct: 7   DLNLLRAFLAVADARSFTAAAERLHIARPQVSLQIRRLENVLGAALFHRTTRTVTLTDAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L   ++ +   LE              G+LR++  ++    ++   + EF + +P++ 
Sbjct: 67  QRLFEESAPLMQGLEQVLQHAGSRGSGLRGRLRVSAPVEYAVQVMSPVVAEFAVRHPEVS 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++ +K  D+  +  D +IR+     SS+ +  KL        A+P YL  C  P + 
Sbjct: 127 LELVVSDKVQDLVGEGIDVSIRVGWLRNSSARVA-KLGEFGQAVLASPEYLARCPRPEAP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I    L       F       + I       L+ +S +++    + G+G+++
Sbjct: 186 EDLAHHRWIALTLLPAPLTWSFT---NGTKDITVRMAPKLRTDSAVALRALLLNGAGVSV 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                ++ +     LVR++ +   P   VY  YP         +AF   +
Sbjct: 243 GSLLHLESDIRSGALVRLLPEWTLPKGGVYAVYPPGTAIAPAARAFVELL 292


>gi|121606585|ref|YP_983914.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595554|gb|ABM38993.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 321

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 127/310 (40%), Gaps = 28/310 (9%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L  F  V   GS T AA    ++ + + R++  LE  +G+KL  R  R +TLT +GS
Sbjct: 4   LKQLESFVSVVARGSLTAAALAEGVAPAIMGRRLDALEERLGVKLLVRTTRRITLTHEGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L   +  +    VK SG LRI      G+  +   + +F   + D+ I
Sbjct: 64  AFLEDCQRLLADLANAEASVSAGGVKASGHLRITAPAGFGRRHVAPLVAKFREQHADVTI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D++ +  DCA+R+   +  SSL+  +L        A P YL+    P    
Sbjct: 124 TLNLGDRVVDLAGEGFDCAVRVGD-LPDSSLVSVRLADNRRLCVATPRYLQLHGTPRHPG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQ------------------- 224
           EL K + +T      +  +   W   V R   G  R   L                    
Sbjct: 183 ELAKFDCLTLSS---EASQTRGWAFRVPRNAQGRQREGVLADAQVDGDSEIIHLKPGGPL 239

Query: 225 -VNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT 280
             +    +  +C+ G GIA    + V+       LV ++ED   P+  +Y  +P+     
Sbjct: 240 DCSDGQVLHDWCLAGYGIAWRSTWEVESEIAAGRLVAVLEDFAAPANGIYAVFPQRKHLP 299

Query: 281 GKLKAFRNFI 290
            +++ + +F+
Sbjct: 300 LRVRLWIDFL 309


>gi|251789480|ref|YP_003004201.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538101|gb|ACT06722.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 297

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 133/298 (44%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+L +F  V   G+ + AA QL  S  +++R ++ LE  +G +L  R  R +  T 
Sbjct: 1   MDRLDELLIFTTVVSQGNLSAAARQLRRSAPAVTRAVAALEKRLGTRLLERTTRKIAPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +    +    E  ES  +  G LR+   +  G+  +   +  FL  +PD
Sbjct: 61  AGLRLAERARILLADYQDAVQESTES--QIRGMLRLTAPVQFGRRHVTPLVMAFLSQHPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI+L+L++ + D+     D A+R+   ++ SS++ R++ ++     A+P YL     P+
Sbjct: 119 IQIELLLNDHNQDLIEQGLDMAVRIGD-LKDSSMVARQVGSVSRMLAASPTYLAARGTPV 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H++I  G L+P     F+   T    +  P    L  N   +       G GI
Sbjct: 178 QPGDLAHHDVIA-GSLLPVVEWRFD---THGTMVKVPISPRLITNDVEAQCVAARAGYGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             L  Y ++D+    +LV ++ +       V    P       +++AF  F   + ++
Sbjct: 234 VRLLSYQLEDDFRHGSLVHLLPEWEPAPLPVQLVAPHRELMPRRVRAFWEFACERLQE 291


>gi|193077926|gb|ABO12824.2| transcriptional regulator LysR family [Acinetobacter baumannii ATCC
           17978]
          Length = 306

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  +   G ++ AA  L + +S +SR+++ LE  +G++L +R  R  ++TE G
Sbjct: 3   DLNDLYYFAKIVEYGGYSAAARALDIPKSKLSRRVALLEERLGVRLLHRSTRQFSVTELG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++    +    E  Q  +  +  +P G +R++    L  + +   L +F+L +P I+
Sbjct: 63  QQYYQYCHAILIDAENAQEFIDLNQSEPRGTIRVSCPPALLHHHMGEFLTKFMLQFPKIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I + + N+++D+  +  D A R+R  P++ S L+ +K VT      A P  L     P +
Sbjct: 123 IYIDVTNRNVDVLNEGIDIAFRVRYPPLKDSGLVMKKFVTSDQCLVAHPRVLSKQPIPQT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +   I  G+   + +   +                L VN    ++Q  + G GIA
Sbjct: 183 LDELHQFRTIGLGNAEQQSVWVLHHQEHGTTHFQHD--PDLIVNDMTGVLQAVIHGLGIA 240

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +  +      L+ ++ +    S  V+  Y         +K   +F+  +
Sbjct: 241 PLPIMMAHEYILRKELIVVLPEWKPTSGIVHAAYASRKGLLPAIKRLLDFLEEQ 294


>gi|239813674|ref|YP_002942584.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800251|gb|ACS17318.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 299

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 127/298 (42%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F VV  +G F  AA +L +S S ++R +S LE  +G++L  R  R + +TE
Sbjct: 1   MDRIQGMATFLVVVETGGFASAARRLKVSPSVVTRAVSELEERLGVRLLTRTTRSVRVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   +E        +   P G++ + ++++ G   +    + +L L+P+
Sbjct: 61  AGMSYAESCRRILVDIEEADSAAAGARTSPRGQITVTSSVNFGCMYVSPIARNYLSLFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I     ++ +++  +  D AIR+ + +  SSL   K+  +     A+P YL+    P 
Sbjct: 121 VEINCWFVDRVVNLVDEGVDVAIRIGE-LPDSSLQAIKVGQVREVLCASPTYLRQHGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L +H +I    + P     F   +       +PR          +  +    G GI
Sbjct: 180 RPQDLSQHVVIAATGVTPTPEWRFRDSSKSATIRLQPR---FTTTMNEAAAECATAGFGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP Y +       +L  ++ED   P+  ++  + E      K++ F +      R+
Sbjct: 237 TRLPLYQIARGVKEGSLALVLEDFERPAVPIHVVHREGRHGARKVRTFIDMAIEALRN 294


>gi|183599150|ref|ZP_02960643.1| hypothetical protein PROSTU_02606 [Providencia stuartii ATCC 25827]
 gi|188021377|gb|EDU59417.1| hypothetical protein PROSTU_02606 [Providencia stuartii ATCC 25827]
          Length = 317

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 127/294 (43%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +++L+VF  V   GS T AAEQL+++ S++SR +  LE ++   L YR  R + L+
Sbjct: 19  MKMTFEELQVFISVVDCGSITAAAEQLNMTISTVSRTLLRLEEKIQTTLIYRTTRKIKLS 78

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G    +   E+    +  +  L      PSGKLRI  +      ++   L  F   YP
Sbjct: 79  DEGGAFLQKAREIVQLAQEAEEMLSARQTIPSGKLRIDASTPFLTRVIAPLLPLFSEQYP 138

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++++       ++     D A R+   ++ SSL    +        A+P YLK    P
Sbjct: 139 QIELEITNFEGFTNLLEKKTDVAFRIGS-LKDSSLNATLIGYSQKRLLASPAYLKKYGVP 197

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H L+ F    P+ +  +        P+       +   S   +    V G G
Sbjct: 198 SSVDDLIHHRLLGF--TAPETLNIWPIKMADGTPLKI--TPDIAAASGEVLFHLAVQGCG 253

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           I L  D++      N  LV+++ +        ++  Y      + +L+ F +F+
Sbjct: 254 ILLSSDFVSYEALANGQLVQVLTEQTDEVKQPIHAVYYRNQAVSPRLRCFIDFV 307


>gi|260777550|ref|ZP_05886444.1| transcriptional regulators LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607216|gb|EEX33490.1| transcriptional regulators LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 299

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 149/302 (49%), Gaps = 11/302 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D  +++VF  +  SGS T AA++L +S+S +S  + GLE  +G+KL  R  R  +LT
Sbjct: 1   MKSDLHRMQVFAQIVESGSITKAADKLDVSKSVLSHHLQGLEQHLGVKLLTRTTRRQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + ++   E+   +   + E+++S+   +G + + +   L  +L+  ++ EF+  + 
Sbjct: 61  EAGQRYYQRCLEMKKLMSLAEEEVRDSNTGLAGTVTVTSPHTLMTHLIGPSMCEFVKNHS 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE- 179
            I+ +L+ ++  +++   Y D +I + + +  SS    K+  +     ++P YL      
Sbjct: 121 GIEPRLLANDMRLNLIDKYIDLSITVGE-LPDSSSRATKIGELEQVLCSSPEYLTKNNIT 179

Query: 180 -PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVL 237
            P++  EL  ++ I           +     +V +     R    ++ +S  +I    + 
Sbjct: 180 LPVTSTELIDYDYIA----NQWEGINVERKFSVGKQSITYRFHSTRLGDSVPTIRMMTLS 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GIA LP   V+D+     L+RI  D ++   +V+  +   L+   +++AF +F+  KA
Sbjct: 236 GLGIACLPILAVEDDLKEGRLIRITADGMSLKASVWAVHNYGLQMPARIRAFIDFVKEKA 295

Query: 295 RD 296
           +D
Sbjct: 296 KD 297


>gi|172062624|ref|YP_001810275.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995141|gb|ACB66059.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 306

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 121/274 (44%), Gaps = 6/274 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 31  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 90

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 91  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 150

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L        AAP YL     P +  EL +HN I    GD      
Sbjct: 151 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGTPGTPHELTRHNCIGIRQGDEGYGIW 209

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
                               L  N     +++ + G GI +  ++ ++D   +  LV ++
Sbjct: 210 RLTGGRGASRNTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADGRLVVVL 269

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            D  TP+  +Y  Y +  + + +++AF +++  +
Sbjct: 270 PDYETPAADIYAVYAQRHQMSARIRAFVDYVAGE 303


>gi|113971672|ref|YP_735465.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113886356|gb|ABI40408.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 300

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 13/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG + 
Sbjct: 6   AMRSFIEVANCGSFTKAAEHLDLSRLQVSRHIQEIEQWLSLRLLHRTTRSVSLTLQGEEA 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    V  ++   +      + +  G +RIAT + LGQ+ L   +  F+ L+P + IQL
Sbjct: 66  LQYCQRVLSEVAAMESRAHSHNTELVGSIRIATPVGLGQHSLFDVVDRFIKLHPKVNIQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +    +  +  D A+R  +     +LI RKL+ I     AAP YL          +L
Sbjct: 126 LMSDSFAQLVDERVDVALRYTEQ-PDENLIARKLMNIDAVLCAAPSYLAQAESLTVPNDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +          + +  L      + +P +  L  N    ++   + G GIA LP 
Sbjct: 185 LSHNCLIHSS-----QQHWQLLKEQQSELIKP-MGNLMANEMGVLVSAALRGHGIAYLPC 238

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +      +  L  ++     P  T++  Y         ++AF +     A+ W+
Sbjct: 239 DLANPYLASGQLQEVLPAYTAPGQTLWAVYLSRSYQQALVRAFID---CTAQQWQ 290


>gi|308188291|ref|YP_003932422.1| HTH-type transcriptional regulator ltrA [Pantoea vagans C9-1]
 gi|308058801|gb|ADO10973.1| Probable HTH-type transcriptional regulator ltrA [Pantoea vagans
           C9-1]
          Length = 305

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 125/289 (43%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   GSFT AA QLHLS SSIS+ ++ LE  + +KL  R  R + LTE G 
Sbjct: 4   LKGMSVFARVVELGSFTAAARQLHLSVSSISQIVAKLEDALQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +      +L   +  P G LRI ++  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLAEATQVHEQLYAFNNTPIGVLRIGSSSTMAQNVLAGMTSDMLREYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   ++ SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGVPAPDLIADGLDLVIRVGA-LKDSSLFSRRLGAMPMVVCAAKSYLAQHGTPEKPG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++D  + + +        E       V R   + R      N  L+++++   G+GIA +
Sbjct: 183 DIDNFSWLEYSVRPDNNFELIAPEGLVTRLAPQGR---FVTNDSLTLIRWLKSGNGIAYV 239

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V D      I        +    VY  Y E  K   K++   +++
Sbjct: 240 PMMWVIDEITAGEIDILFPHYQSDPRPVYALYTEKDKLPLKVQVCIDYL 288


>gi|307728729|ref|YP_003905953.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583264|gb|ADN56662.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 302

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 130/297 (43%), Gaps = 10/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +  F  VAR GSFT AA +L +SQS++S+ I  LE  +G++L  R  R +  TE G
Sbjct: 5   DLSDITAFLSVAREGSFTKAAARLGVSQSALSQTIRNLEARLGLRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +  +++     L     KP+G +RIA      + +L   ++  L  YPDI 
Sbjct: 65  ERLITAVGPLLDEIQAELAALSALRDKPAGNVRIAAGEHAAETVLWPAVERLLPDYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++DN   DI  +  D  IRL + +  + +       + M     P Y +   +P + 
Sbjct: 125 VEIVIDNGLTDIVGERLDAGIRLGEQVAGNMVAVPIGPDMRMAIVGTPDYFRRHPKPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L +HN I     +P     + W         + R+   L  N+    ++  + GSG+A
Sbjct: 185 QDLTRHNCINI--RLPTAGGLYAWEFEKGGRALKVRVEGQLVFNTATMSVRAALAGSGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +P+  V     +  L R++ D        +  YP   + T         +    RD
Sbjct: 243 CVPEERVLSHIRSGELTRVLLDWCPSFAGFHLYYPSRRQPTPAFSV----LLAALRD 295


>gi|71278918|ref|YP_267550.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144658|gb|AAZ25131.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 298

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 140/297 (47%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +  SGS T AA +L+ S  ++ R ++ LE  + I+L  R  R + +TE
Sbjct: 1   MDKLIAMQVFMQIIESGSLTKAANELNTSLPTVVRTLAALEEHLQIRLINRTTRKIAITE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +  +   ++ +++E +++E+  +   PSGKL+I+ ++  G   +   + +FL  +  
Sbjct: 61  EGKRYLQRCRKIQYEIEQSELEISANQKAPSGKLKISASVMYGSAYIAPLITKFLQEHKQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L +++I++  +  D AIR+  P+  S++I RK+ ++     A P  L +    +
Sbjct: 121 VTIELELSDQNINLIEEGVDVAIRIG-PLNDSNMIARKVGSVRKIICATPALLNSLAPII 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + +     I F  L      +F      D+ I  P    L  N+  S +       G+
Sbjct: 180 KPKNISDVPCILFTGLSNGSNWNF---YENDKVISIPVKGPLICNNITSALSVVKESLGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                Y ++    N  L  ++E   +P   V   Y  A   + +++ F +++  + R
Sbjct: 237 GQFLSYQIEQELKNGELCTVLEAFESPPLDVNVVYSHAKLMSTRIRYFVDWVTHELR 293


>gi|239820179|ref|YP_002947364.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805032|gb|ACS22098.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 302

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 134/298 (44%), Gaps = 10/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR+F    + GS + AA  L LS ++ISR+IS LE E+G++L  R +R L +TE G 
Sbjct: 4   LDSLRIFVATQKKGSLSAAARSLSLSPATISRRISALEEELGVQLVDRTSRNLKVTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   V   +   +  +  +  +P G+LR+ +   +G  +L   L  F  LYPDI++
Sbjct: 64  AFLERAEAVLELMSEAEQVVHNARQRPEGRLRVHSRTHIGLRVLAPLLPRFAELYPDIRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L    +++     D  IR  +    S  + ++L++      A+P ++K         
Sbjct: 124 ELELSEHPVNLVEHDFDVDIRTGES-TDSGFVIKRLLSSDEVLVASPAFVKTYSRIRHPN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +   +T+     + +  + ++              L  N+   +    + G G+ALL
Sbjct: 183 DLPQVRCLTYRRE--REVITWKYIDEAGEQQELVIQGVLSANNGELLRLAAIGGMGVALL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITP----SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +  V+ +     LVR++ D        S  V+  + ++     K++AF +++    R
Sbjct: 241 SEATVRSDLQAGTLVRLLPDYRFAVRAFSNGVFAVFRQSRVLPLKVRAFVDYVADALR 298


>gi|89899286|ref|YP_521757.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344023|gb|ABD68226.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 294

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V  +  F  AA+   +  S++SR+I+ LE  +G++L +R  R + LTE G 
Sbjct: 4   LNDMALFVEVVNAKGFRGAADATGVPNSTVSRRIALLEKAIGLRLLHRTTRRVELTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +      +L E   +PSG LR +  +D     L   + EF   YP I+ 
Sbjct: 64  IYYERCRRIVDEARIAHEQLGEMLAQPSGVLRASLPVDFASIYLAPIITEFAQHYPGIRF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  L  + +D+  +  D AIR+   +  S+LI R+L +I    +A+P YL    EP    
Sbjct: 124 EFDLTPRRVDLITEPFDVAIRVGD-LPDSTLIARQLASIKAEVFASPGYLAKAGEPQIPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH  + F  +    ++       V      P      +N+     +   L  G+ LL
Sbjct: 183 DLSKHECLGFPKVEHWVLQSGVHTEQV------PVSGRYVLNNVGMFRRLATLDQGLILL 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V ++     L  ++         VY    E      K + F  F+  +
Sbjct: 237 PRAVVAEDIQLGRLRHVLPGWHGKPQPVYALT-ETRLLPAKTQRFIEFVRDR 287


>gi|86144352|ref|ZP_01062684.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85837251|gb|EAQ55363.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 310

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G  +
Sbjct: 12  DLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEKALSVKLFERTTRTLIITQAGQLV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G + +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 72  YDQSVVMINAAQQAVELSTSDHTEPAGSITVAAPEAFLNSVLQPFVVPFLNQYPEIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DIDI     D A RL       SL+ ++L   ++   A+P YL     P    EL
Sbjct: 132 RAADGDIDILRQGIDIAFRLTDK-PDESLVLKELGKTNLVLCASPDYLDAKGIPHHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +   +     + DF      D     P      VN     ++    G G+ +  D
Sbjct: 191 SEHDCLYLAETDKDHIWDF---LKDDEFHTVPVTGRYAVNHSQMRLKGVKEGLGVGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++++D     ++V+++ED    S     +   + +      +L+ F ++      D
Sbjct: 248 FVIQDALAEGSVVQVLEDWTIKSNYHGAIAMQFAQTKYMPARLRVFIDYAMEHLGD 303


>gi|222083038|ref|YP_002542403.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221727717|gb|ACM30806.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 296

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 13/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LRVF  VA +G  T AA +L  S+S +SR ++ +E  +G +L  R  RG  LTE 
Sbjct: 1   MDIEDLRVFVEVADAGGITSAARRLGASKSMVSRALTRIEGALGAQLLARTTRGAGLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      + V  +++T +  +        G+LRIA  +  G       L +    +P +
Sbjct: 61  GALFRDHAARVCAEIDTAREAIL-PQGDLRGRLRIAVPLTSGPVHFAPVLAKMARHHPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QIQ    ++  D+ +D  DCAIR+   ++ S+LI +++  I+    A+P Y++    P +
Sbjct: 120 QIQADYSDRFADLIVDGFDCAIRVGA-LRDSNLIAKRVGQIYGKLVASPDYIRLHGSPQT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +++  H  +   +               ++ +        + ++ +++      G GIA
Sbjct: 179 PEDIASHQALVGAESWR--------FMDGEKIVTVQPQGRFRTDNGMALASAAAEGLGIA 230

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD + +D   +  LV IM     P   VY   P +   + K++    F+  
Sbjct: 231 WLPDCVTRDYLASGALVPIMTRFPLPIGGVYVVRPPSPHPSRKVRILSEFLIE 283


>gi|171317475|ref|ZP_02906666.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097371|gb|EDT42215.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 295

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 132/288 (45%), Gaps = 6/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  VA   SF  AA +L++S SS +R + G+E  +G +L  R  R L+LT+ G    
Sbjct: 7   MRLFIKVAELHSFARAATELNISNSSATRLVMGIEDRLGARLLNRTTRSLSLTDAGHLYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  +  +     +P G L+IA  +  G ++L   +  F  L+P I  ++ 
Sbjct: 67  AQIRHVIEEIDRVEDTIASMHHEPIGSLKIAAPVMFGMHVLAPAIDAFKTLHPAIVPEVT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D  + L + I +++LI R L  + M   AAP Y+     P+   +L 
Sbjct: 127 IVDRHVDLVSEGFDVGLLLSQRISTNTLITRPLTRLKMIVCAAPRYVDARGAPIHPHDLA 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +TF        E  ++     R    P  S    N+   I  + + G GIA+LPD+
Sbjct: 187 SHAYLTFHADF--AGEYLSFDHEPTRVAVRPNKSA-SSNNIGLIRNWALSGMGIAVLPDF 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +V+    +  L+ ++ D       +   YP       K + F + +  
Sbjct: 244 LVESDLADGRLLALLPDYRLEELEMNIAYPSRRHFPRKTRLFVDHLVE 291


>gi|295095771|emb|CBK84861.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 296

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA QL +SQS++S  +  LET + ++L  R  R +  TE G
Sbjct: 5   NFNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRNLETRLEVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S    ++E     L+++  +P+G +R+         +L   LK F+  YPDI 
Sbjct: 65  EQLFMRLSPHLLEIEQELTALRDTRDRPAGNIRLTAGEHAMSAVLWPVLKPFMAQYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  +RL + +    +  R    + M    +  YL+    P + 
Sbjct: 125 VEVTVDNGLTDIVDGRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSAEYLQRFGVPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++LD+H  I     +P     + W    D      R+   L +NS    +     G G+A
Sbjct: 185 EQLDQHRCINM--RLPTRGGLYAWEFERDGRELRVRVDGQLILNSLPQRIDAAENGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V+D      LVR++E         +  YP   ++T         +
Sbjct: 243 YVPEDAVQDALAESRLVRVLEAWCPAFTGYHLYYPSRRQHTTAFALLIAAL 293


>gi|262039924|ref|ZP_06013196.1| LysR family transcriptional regulator protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259042755|gb|EEW43754.1| LysR family transcriptional regulator protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 308

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 137/301 (45%), Gaps = 16/301 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGNISAAARKLEITPPSVSNALRLLEEHIGHPLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+     LE +   +++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTAAAVETLEKSLEIIRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           ++ + +  ++I  +  D  IR    ++   ++ R L+       YA+  YL     P   
Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILE-GGVVARPLMKPFREGLYASSAYLAEYGVPAMP 184

Query: 184 QELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +L  H LI +       ++P  + D     TV+ P        L  N    +      G
Sbjct: 185 ADLHHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI  L + I++   D    + +MED       +Y  YP+    T ++KA  +F+ + A 
Sbjct: 239 LGIGRLFEPILQLQPDREQFIPVMEDYWKTYPPIYLYYPKNAGRTKRVKALIDFLIMHAA 298

Query: 296 D 296
           D
Sbjct: 299 D 299


>gi|197248414|ref|YP_002147807.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197212117|gb|ACH49514.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 303

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  SGSFT AA     +++ +S  I  LE E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD+
Sbjct: 62  GVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTSEFGEQVVIPVLAQFSQRHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       S
Sbjct: 122 RIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARNPVS-S 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +   I    L                 +   +   + V+S  S+M + + GSG+A
Sbjct: 180 LESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V     +  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 LLPQWLVNTALGDGTLIHLLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 293


>gi|161523121|ref|YP_001586050.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348058|ref|YP_001941254.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160346674|gb|ABX19758.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189338196|dbj|BAG47264.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 324

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 125/296 (42%), Gaps = 5/296 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             + VF   A  GS   AA    +S  + S  +  LE  +G++LF+R  R L+LTE+G +
Sbjct: 5   RAITVFVRAATLGSLRAAAVDQGISPQAASHAVMQLEKALGVRLFHRTTRKLSLTEEGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L          L +   + + S  + +G LR++    LG  +L    + F   YPD+Q+ 
Sbjct: 65  LFDSVKPALAMLASALGDARRSKSEVAGLLRVSAPRALGLPVLWPCFEAFEHAYPDVQLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D++  D+  + AD   R   P  S+  I R LV I +   A+P Y+     P +I E
Sbjct: 125 VRFDDQFTDLVTERADVGFR-GGPPPSAGSIARPLVPIQLIVCASPAYIARHGAPRTIDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H    +       +  + +    D  +     + L VN         + G G+  L 
Sbjct: 184 LAAHRCTGYRRANTGKLAQWTFRVG-DEIVYRDVPAALTVNDTDMETHAVLSGLGVGQLG 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +       +  LV ++ + +     +Y  Y    + + ++K F +F+  +  D +
Sbjct: 243 SFSAAMHLRSGRLVPLLTEHVVEHGMIYLYYGHRTERSLRVKTFIDFVVERLADNR 298


>gi|83749620|ref|ZP_00946604.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|207738749|ref|YP_002257142.1| hypothetical protein RSIPO_03437 [Ralstonia solanacearum IPO1609]
 gi|83723727|gb|EAP70921.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|206592117|emb|CAQ59023.1| hypothetical protein RSIPO_03437 [Ralstonia solanacearum IPO1609]
          Length = 316

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 126/295 (42%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LE  +G++L  R  R + +T+ G
Sbjct: 3   DLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S  +     +           + +  KPSG+LR++  + +    L   L +FLL  P+++
Sbjct: 63  SAFYAQCEVMTQAARAAFEVAEHAGEKPSGRLRVSCPVGVAHVFLAPVLSKFLLAQPEVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L + N+ +D+  +  D A+R+R  +  S+L+ R          A+P ++       S 
Sbjct: 123 LELDVTNRRVDVIGEGYDVALRVRATLDDSNLVARTFGVSDQVLVASPSFVAEHGPFDSA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             L     +          E   W  T      +    +     +    + Q  + G GI
Sbjct: 183 ASL---RGVAGVGFGGTGGERARWRLTGPDGAAVDIEYVPAFVTDDLFLLGQTAIAGVGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP  +  +   +  LV ++ D   P    +  +P        ++AF  F+  +
Sbjct: 240 AQLPFNLCAEAIRDGRLVVLLPDHRLPVHQFHAVFPSRRGLVPAVRAFIEFLAEE 294


>gi|239833168|ref|ZP_04681497.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239825435|gb|EEQ97003.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 300

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 122/277 (44%), Gaps = 7/277 (2%)

Query: 17  SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76
            GSF  AA +L ++  ++S  ++ LE  +G++L  R  R +  TE G +L +  +    +
Sbjct: 18  HGSFRGAARELAIAPPAVSHAVATLEDSLGVRLLARTTRSVAPTEAGRRLLKRLAPALAE 77

Query: 77  LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136
           ++       E+  +P+G LRI+  +   Q +L   L EF+  YPDI + L +DN   DI 
Sbjct: 78  IDQALGAALETKDRPAGILRISAPLVATQLMLAPRLGEFVRHYPDITLDLRIDNAFTDIV 137

Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGD 196
               D  +RL + +++  +  R           +P Y +    P   ++L +H  +    
Sbjct: 138 AAGFDAGVRLGENLEADMIAVRLGGPQRGAVVGSPAYFEARPAPSHPRDLAQHRCLRQRF 197

Query: 197 LIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---N 252
                   + W    +  I E  +   L  N    +++  + G+G+  L +   +D    
Sbjct: 198 ---PGGRLYRWEFEKNGQIVEIGVEGPLIANDNGILLEAALAGAGLVWLFEDYTRDFLAE 254

Query: 253 PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             LVR++ED   P    +  YP   +    L+AF +F
Sbjct: 255 GRLVRVLEDWCAPFEGFHLYYPSRRQMRPALRAFIDF 291


>gi|27367359|ref|NP_762886.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37677113|ref|NP_937509.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|320159204|ref|YP_004191582.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
 gi|27358928|gb|AAO07876.1|AE016811_117 Transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37201658|dbj|BAC97479.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319934516|gb|ADV89379.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
          Length = 315

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 128/296 (43%), Gaps = 13/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +VG  LF R  R L LT  G+
Sbjct: 4   LNDLNIFVETARQGSFSQAANSLDLTPAAVSAAIKRLEEQVGFPLFVRSTRSLRLTSDGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              + T+     L+    E+  +  + +G+L I    D G+N+L   + EF+  +P + I
Sbjct: 64  LFLQKTTAALSLLQDGLDEINSARGELAGQLYITAPSDFGRNMLLEWIDEFIEQHPRVTI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+     D AIR  +P   S+L+   L         A+P YL +    L  
Sbjct: 124 KLDLSDSLTDMYSKPVDLAIRYGEP-ADSNLVAIPLCRSNERILCASPDYLASQPPILHP 182

Query: 184 QELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +L +HN + +   G +  K    F   +      G P       N    + +  + G G
Sbjct: 183 SDLLQHNCLCYMVSGAIYNKWTLHFEGQSEHVLVSGNP-----TTNDSEVVHRQALKGKG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A      V  +     LVRI+ +    S  +Y    +    T  ++ F+ F+  K
Sbjct: 238 VANKSLMDVSQDILEGKLVRILPEWDGGSVPIYMMCTDRRALTPLMRQFQEFVQQK 293


>gi|103486055|ref|YP_615616.1| LysR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976132|gb|ABF52283.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis
           RB2256]
          Length = 311

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 134/295 (45%), Gaps = 8/295 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+  D++    F  VA  GSFT AA  L LS++++S+ ++ LET +GI L +R +R + +
Sbjct: 1   MALPDYEGWACFVAVADGGSFTAAAAALGLSKATVSKAVTRLETSLGITLLHRSSRVVAV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +  G+ L      +           +   +  +G +R+A  +  G  +L   L  FL  +
Sbjct: 61  STAGAGLLDEARAMVAAATAATEAARGDRLDLAGPIRLAAPMSFGIKVLGPVLAAFLDRH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P ++I L+L +   D   +  D  +R+  P+  SSL+ R +  +     A+P YL+    
Sbjct: 121 PAVEIDLLLSDARNDPIAEGIDLTLRIA-PLADSSLLARTIAPVAASLIASPAYLEKHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L +H LI +G         F+                L  N+   ++   V GS
Sbjct: 180 PRHPLDLARHRLIGYGHRQRAMPLHFS---REGEEATVLPTGPLFANNGDVMVPMIVAGS 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GIA+LPD+I  +      +V I+ D   P   ++   P +     +++AF + + 
Sbjct: 237 GIAVLPDFIAAEELAAGTVVPILTDWSLPQSYLHLLSPPSRLRPARVRAFSDHLV 291


>gi|226952736|ref|ZP_03823200.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|294650058|ref|ZP_06727445.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226836527|gb|EEH68910.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|292824068|gb|EFF82884.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 297

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 135/297 (45%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  V   G+F+ +A+ L++S+  +S++I  LE ++ + LF R  R + LT 
Sbjct: 1   MDRIDCINTFLSVVEHGNFSTSAKNLNISRDLVSKRIQYLENDLKVSLFIRTTRRMNLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K ++    +  +LE  + E+      P G+L+I   +   +++L   + +F+  +P 
Sbjct: 61  CGEKFYQHAKVMMSELEWAKYEISYDQQYPEGELKINAPLSFSRDVLTDIISDFIQQFPF 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L L +  +DI     D  +R+   +   +     + T     YA+  YL     P 
Sbjct: 121 IKIDLYLTDSFVDIYEQQFDLTLRV-DDVADHNFQNTVIGTYKRSFYASKEYLDKKGIPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L KH+++ +           +   T +     P+      N+   ++  C  G GI
Sbjct: 180 TIDDLKKHDILLYSQKNSHNKITLSRNETTELIQCYPK---FICNNGDLLLDLCTKGHGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             LPD+I K   D   + R +ED  +P    Y  YP     + KL+ F +F+  + +
Sbjct: 237 VFLPDFIAKKYFDAGEISRCLEDYHSPMMNFYALYPNGQNISKKLQIFIDFMIRQFK 293


>gi|269854705|gb|ACZ51377.1| putative LysR family transcriptional regulator [Pseudomonas sp.
           NyZ402]
          Length = 312

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 129/286 (45%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A +G+F +AA Q+ +++S I+ ++  LE  +G+ LF+R +R + L+E G+  +
Sbjct: 7   IEAFVRAAEAGNFANAARQIGVAKSVITTRVQQLEEHLGVSLFHRSSRAVKLSEVGASYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++      +++    SG LR+A         L   ++ F   +P +Q+ + 
Sbjct: 67  TDCQALIDQMQALSQRSRDTCASVSGTLRVAALNGFALEHLPKVIETFRKSHPGVQLDVF 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D   +  D  +++  P   S LI+R+L  +     A P YL+      +  +L 
Sbjct: 127 ANDQVVDPVQEGYDIVLQIFPPASDS-LIERRLFLMRGVFVATPDYLEGKPPIETPDDLC 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+   +     +     N        +       L+ NS   I ++   G GIA LP  
Sbjct: 186 LHDFACYRYYPWRRWSLNNQEHKQQSEVTL--TPALRSNSVHLIQEFARRGMGIAYLPTM 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  ++     LVR++ D  T +      YP + + T K+K F + +
Sbjct: 244 VACEDLLQGRLVRVLPDYQTDTPYFSAVYPTSHRLTAKVKLFLDLL 289


>gi|221212173|ref|ZP_03585151.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168258|gb|EEE00727.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 324

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 125/296 (42%), Gaps = 5/296 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             + VF   A  GS   AA    +S  + S  +  LE  +G++LF+R  R L+LTE+G +
Sbjct: 5   RAITVFVRAATLGSLRAAAVDQGISPQAASHAVMQLEKALGVRLFHRTTRKLSLTEEGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L          L +   + + S  + +G LR++    LG  +L    + F   YPD+Q+ 
Sbjct: 65  LFDSAKPALAMLASALGDARRSKSEVAGLLRVSAPRALGLPVLWPCFEAFEHAYPDVQLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D++  D+  + AD   R   P  S+  I R LV I +   A+P Y+     P +I E
Sbjct: 125 VRFDDQFTDLVTERADVGFR-GGPPPSAGSIARPLVPIQLIVCASPEYIARHGAPRTIDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H    +       +  + +    D  +     + L VN         + G G+  L 
Sbjct: 184 LAAHRCTGYRRANTGKLAQWTFRVG-DEIVYRDVPAALTVNDTDMETHAVLSGLGVGQLG 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +       +  LV ++ + +     +Y  Y    + + ++K F +F+  +  D +
Sbjct: 243 SFSAAMHIRSGRLVPLLTEHVVEYGMIYLYYGHRTERSLRVKTFIDFVVDRLADNR 298


>gi|153837446|ref|ZP_01990113.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149749246|gb|EDM60031.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 311

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 129/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L LS ++++ ++  +E   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMTLFVSIVKHQGLAAAGRELGLSPATVTARLQAIEERYGVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+    +   ++ T+  LQ    +  G L+I+   D+G+ ++   +  F   YPD
Sbjct: 61  AGAMYHQACLNIIDSVKETENLLQTGISQVRGTLKISAPRDIGKQIISPMVSAFSEQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  S+LI RKL +      A+P YL     P 
Sbjct: 121 VTPYLYLNDNLSNLAESGLDLVIRYGE-LADSNLISRKLASSQRVLCASPDYLSKQGVPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
             Q+L  H  +    ++    E   W    +       ++  +  +    I Q+ + G+G
Sbjct: 180 CPQDLAVHRCLA---MVRSNEELKTWHFKDEESHQTITVTPKRFSDDGEVIRQWALDGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDV--------ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     ++ +     LV +++                ++  Y        +++ F +F
Sbjct: 237 IALKSILDIQQDLKQQRLVTVLDGYMKNFSAFSQGAEADLHVIYQSRQYQPKRVRLFLDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LVEQ 300


>gi|330992734|ref|ZP_08316678.1| Putative HTH-type transcriptional regulator ycaN [Gluconacetobacter
           sp. SXCC-1]
 gi|329760212|gb|EGG76712.1| Putative HTH-type transcriptional regulator ycaN [Gluconacetobacter
           sp. SXCC-1]
          Length = 304

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 125/294 (42%), Gaps = 6/294 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VAR  SF  AA++L LS S++S  I  LE  + ++LF+R  R +  TE G++L
Sbjct: 9   ELTAFLAVARHQSFRIAADELALSPSTLSHMIRALEERLELRLFHRTTRSVAPTEAGAQL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +   LE T   +     +PSG LRI  +    + LL+  +  F+  YPD+ + L
Sbjct: 69  VAQLAPILSSLEQTLATVGMLKARPSGTLRINASRHAARALLRDIMPFFVHRYPDVHVDL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + + + IDI  +  D  IRL + +    +  R        A A+P YL     P +  +L
Sbjct: 129 VTNGRFIDIVAEGFDAGIRLAQAVPQDMIAVRFGADGRFVAVASPDYLATHGIPRTPDDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I F   +P         A   +         L ++    ++     G GIA + +
Sbjct: 189 LHHACIRF--RLPGGRLYRWEFARYGQDHVMDVAGALTLDDMDLMVDAASAGQGIAFVSE 246

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL-KARD 296
              ++      L  I++D           YP        L+AF + +   +AR 
Sbjct: 247 ETAREALEKGRLAIILDDWSPAFPGYALYYPGHRLVPPALRAFIDVVKELQARQ 300


>gi|163857341|ref|YP_001631639.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261069|emb|CAP43371.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 309

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 125/300 (41%), Gaps = 9/300 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  VA++ +F  AA  L + +S++SRQ++ LE  +G++L  R  R + LTE G 
Sbjct: 4   LQGMEFFVEVAKTCNFGRAAANLGMPKSTVSRQVAELERSLGLQLLSRTTRKVELTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +    +    ELQ+    PSG LR+    D G + L     EF   YP++  
Sbjct: 64  LYFERCQRIVADAQIAHEELQKLVEMPSGPLRVNMPADFGTDFLAEAFMEFSQRYPEVTF 123

Query: 125 QLIL-DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L   +         D +I +   +  S+ I R L  +  + YA+P YLK    P   
Sbjct: 124 YLDLASPEHAGRVFQRCDISIEIGA-LPDSTQIARLLGRLSAYLYASPDYLKRHGTPQHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + F     +       L+  D  I     +   VNS   +     LG+GIA+
Sbjct: 183 SDLTSHECLEFRADNARVTRWP--LSRGDERIEVTPGNRFSVNSVAMVRSLASLGAGIAI 240

Query: 244 L-PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           L P   V+ +     L R++ +     F VY    +      K + F  F+  + RD K 
Sbjct: 241 LAPAQSVRQDVEQRRLQRVLPEWQAGPFPVYAVT-DTRLLPAKTRIFIEFLMERLRDGKL 299


>gi|238789516|ref|ZP_04633301.1| LysR substrate binding domain protein [Yersinia frederiksenii ATCC
           33641]
 gi|238722466|gb|EEQ14121.1| LysR substrate binding domain protein [Yersinia frederiksenii ATCC
           33641]
          Length = 294

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 129/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  VAR GSFT AA +L L+QS +SR I  LE  +GI+L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMQVAREGSFTAAARRLGLAQSGVSRSIRELEERLGIQLLARTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++     ++ L+     L      PSG +RI  +      LL   L  F   YPDI+
Sbjct: 66  EQLYQTVESGFNALDMGLTTLAHYRHTPSGTVRINASQHAIDKLLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   + +  +  R    + M   A P + +    P + 
Sbjct: 126 LELISESRFVDIIAERFDAGVRLGPEVGNGMVAVRITPDMEMAIVATPEHFRRYDFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +        +    L   D+ I          +      +   LG G+A 
Sbjct: 186 ADLVIHPCIVYQFADGSLYQWE--LNQDDKKITHRPQGQWAFSDSYMEAEAARLGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P+ +V D+     L+R+++         +  YP     +  L+   +
Sbjct: 244 VPEELVADDLERGVLIRVLQRYSQRLEGSFLYYPH-RNVSPALRVVID 290


>gi|296156373|ref|ZP_06839211.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295892972|gb|EFG72752.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 303

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 129/295 (43%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  +  + SF+ AAE L L +SS++  I  LE E+G  L  R  R L+LT+
Sbjct: 1   MDKLQAMTTFVRIVEAQSFSKAAETLSLPRSSVTTTIKSLERELGTTLLRRSTRTLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  ++   + EL   +  P G++R      +G+ ++   L EF   +P 
Sbjct: 61  AGERYYASCRAILAEIARVEGELSADTASPRGRVRADMPGVIGRAMVLPRLHEFAQRFPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L L ++  D+  D  DC IR  + +  SSL  R+L  +     A+P YL    EP 
Sbjct: 121 IELVLGLSDRPADLIYDGIDCVIRTGE-LADSSLTARRLGELSWITCASPRYLTAHGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++  L  H+ + +  +        +W   V    +     S   VN   + +Q  + G G
Sbjct: 180 TVGALTDHHAVNY--ISNATGRPLDWRFHVQGEDLTIAMQSRFAVNETEAYLQCGLEGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  L +++      +  L  ++    + +  V   YP     +G  + F ++I  
Sbjct: 238 LIQLSEFVALPYLKSGRLKEVLATARSSAVPVSIVYPHGRNASGATRTFVDWIAE 292


>gi|207724934|ref|YP_002255331.1| hypothetical protein RSMK03392 [Ralstonia solanacearum MolK2]
 gi|206590161|emb|CAQ37122.1| hypothetical protein RSMK03392 [Ralstonia solanacearum MolK2]
          Length = 316

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 126/295 (42%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LE  +G++L  R  R + +T+ G
Sbjct: 3   DLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S  +     +           + +  KPSG+LR++  + +    L   L +FLL  P+++
Sbjct: 63  SAFYAQCEVMTQAARAAFEVAEHAGEKPSGRLRVSCPVGVAHVFLAPVLSKFLLAQPEVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L + N+ +D+  +  D A+R+R  +  S+L+ R          A+P ++       S 
Sbjct: 123 LELDVTNRRVDVIGEGYDVALRVRATLDDSNLVARTFGVSDQVLVASPAFVAEHGPFDSA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             L     +          E   W  T      +    +     +    + Q  + G GI
Sbjct: 183 ASL---RGVAGVGFGGTGGERARWRLTGPDGAAVDIEYVPAFVTDDLFLLGQTAIAGVGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP  +  +   +  LV ++ D   P    +  +P        ++AF  F+  +
Sbjct: 240 AQLPFNLCAEAIRDGRLVVLLPDHRLPVHQFHAVFPSRRGLVPAVRAFIEFLAEE 294


>gi|16765020|ref|NP_460635.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167993714|ref|ZP_02574807.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|197264896|ref|ZP_03164970.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|16420204|gb|AAL20594.1| putative LysR family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|197243151|gb|EDY25771.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205328254|gb|EDZ15018.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261246867|emb|CBG24684.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993608|gb|ACY88493.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158203|emb|CBW17702.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912668|dbj|BAJ36642.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224304|gb|EFX49367.1| LysR family transcriptional regulator YcjZ [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323129945|gb|ADX17375.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988562|gb|AEF07545.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 301

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTIDWFFTREGKDYAIRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++  +    +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNH-SYDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|312960818|ref|ZP_07775323.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311284476|gb|EFQ63052.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 300

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L VF   A +GS + AA  L L+ ++ S  +  LET +G +L  R  R + LTE+G   
Sbjct: 6   DLEVFVRTADTGSLSAAARGLGLTPAAASIALKRLETRLGTRLLARSTRSMRLTEEGKHY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E    L   +  L++     +G L++A   D G+N++ G L EF   +P+I++QL
Sbjct: 66  LDSVREALAALAEGEQALKQQGQGLTGLLQLAAPSDFGRNVVLGWLDEFKREHPNIRLQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPLSIQE 185
           +L++ + D+  D  D A+R   P + SSL+   +V  H   A A+P YL     P +  +
Sbjct: 126 LLNDSNADLFRDTVDIALRFGIP-RDSSLVALPVVPGHQRIACASPDYLLRHGTPTTPAQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H  + +   + +   +  W       + E  ++     +    + ++ + G GIA  
Sbjct: 185 LAQHTTLRY---MRQGRANSTWFFCQGNDLQEVEVTGDYLSDDGEIVRRWALAGHGIAYK 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +  +  +     LV+++ D            P  L+ + ++K    F+  + +
Sbjct: 242 ANLDIARDLKAGRLVQLLPDWQGEPTPFNLMCPHRLQVSERVKVLHRFLQERCQ 295


>gi|163803879|ref|ZP_02197722.1| transcriptional regulator [Vibrio sp. AND4]
 gi|159172317|gb|EDP57201.1| transcriptional regulator [Vibrio sp. AND4]
          Length = 298

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 135/302 (44%), Gaps = 11/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L+VF ++   GS + AA+ L + ++ +SR +S LE  VG +L +R  R  +LTE
Sbjct: 1   MDRLSALKVFIIIVEQGSLSGAAKLLDIEKTKVSRYLSELERWVGTRLLHRTTRTQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K      ++          + + +   SG+LRI+    +    L   + EF   +P+
Sbjct: 61  AGEKTLTHAYQIDSIAGDINSIIDQKNNSLSGRLRISCAYYMVNAFLLEAVNEFCAKWPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+LI+ ++D  +  +  D A+R    +   +++ +K+        A+P YL     P+
Sbjct: 121 VKIELIVTDRDTHLIEEGIDLAVRTSNHL-DLNVVAKKIGMCRSVVVASPQYLLANGTPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q L +HN ++F            +    D     P    +  N    +++  + G GI
Sbjct: 180 APQSLAEHNCLSFSYADKHKW----YFYREDNVETVPISGQVTANVSNILLKATLSGVGI 235

Query: 242 ALLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  P      ++K +  LV+++ D       +Y  Y    + T   ++F +FI  K  + 
Sbjct: 236 SQQPLVSSLPLIK-SGQLVQLLSDWELKKNGIYLVYASRKQMTPLHRSFIDFITEKISND 294

Query: 298 KF 299
           +F
Sbjct: 295 EF 296


>gi|167621781|ref|YP_001676566.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351522|gb|ABZ74252.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 302

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 130/294 (44%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V  +G FT AA+ L + +++ S+ ++ LE  + I+L  R  R + +T 
Sbjct: 1   MDQLTAIKVFCRVVETGGFTRAADALDMPKATASKLVNELEAHLRIRLLNRTTRSVQVTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +   S    +L+          VKP G++ +  +  +   +L   L  F   YPD
Sbjct: 61  EGAAYYERISRWLRQLDDIDNAFDHERVKPQGRITVDASAWVANAILIPALPRFYDDYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI L + ++ + +  + ADC IR    +   +L+ R L        A+P YL+    P 
Sbjct: 121 IQIDLGVSDRPVHLIRENADCVIR-GGHLADQTLVGRSLGASRWVTAASPSYLERYGTPS 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L + H LI+      +  +         + +    +S L VN   + +   + G G
Sbjct: 180 HPSDLGEGHQLISHQLASGRTTQFR--FERDGKEVKVDGVSRLSVNESNAHLAAGLAGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +    ++ ++    +  LV I++D    ++  +  YP       +L+ F +++ 
Sbjct: 238 VLQSFEWKLRPALRSGQLVSILDDWRPSTYPFHVLYPPNRFMNTRLRVFIDWLV 291


>gi|16263755|ref|NP_436547.1| putative gstR-like transcriptional regulator protein [Sinorhizobium
           meliloti 1021]
 gi|15139879|emb|CAC48407.1| putative gstR-like transcriptional regulator protein [Sinorhizobium
           meliloti 1021]
          Length = 301

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 130/297 (43%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  +R+F  V  SG F  AA+ LH+S  S++R ++ LE  +G +L  R  R L LT 
Sbjct: 1   MDRWQAMRIFVQVVESGGFAPAAKVLHMSPPSVTRAVAKLEDLIGTRLLVRTTRSLKLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  ++   +     S   P+G L +      G+  +   + +FL  YP 
Sbjct: 61  AGEGYVADCRRILGEIAEAEANAAGSFTAPAGLLTVTAPALFGRIHVLPVILDFLDHYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++ I  ++  ++  +  D AIR+   + +S L+ R++ ++      +P Y     +P 
Sbjct: 121 MQVKTIFVDRVTNLVDEGLDVAIRIAS-LPASGLVARRIGSVRQVLCGSPDYFARFGDPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S QEL +H +I    L         WL   D  I  P    L  N+  +++   V G G+
Sbjct: 180 SPQELARHRIIGREGLFGHS----EWLFGRDNNIRVPISPRLICNTNDAVLAAAVAGWGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +    Y V  +     L  ++ D       ++  + E    + +++AF +F   + R
Sbjct: 236 SRFQSYQVAPDVSAGRLKVVLADYEREPVPIHIVHAEGRIVSARVRAFVDFAAGRFR 292


>gi|304397938|ref|ZP_07379814.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304354649|gb|EFM19020.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 322

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 128/285 (44%), Gaps = 6/285 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D ++ F  +  SGS + AA QL  +Q ++SR++  LE  +G+KL  R    L LT+ G 
Sbjct: 10  IDLMQTFIRIVESGSLSAAAAQLGTTQPTVSRRLQTLEQRLGLKLILRTTHALKLTDDGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++     T + EL  +S  P G LR+      GQ+ L   L ++L  YP + I
Sbjct: 70  RCYAQARQLLATWHTLEDELTGASADPVGTLRVRAPHAFGQDQLIAPLVDYLHRYPRLNI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L+++  D   +  DCAI++  P    S++   L  +     AAPH L        I+
Sbjct: 130 EWMLNDRTPDFMAENVDCAIQVGAP-TDPSVVAVLLAEVPRIVVAAPHLLAQYPPIAQIE 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +          E         +P+       L  +S  ++ +  + G G A++
Sbjct: 189 QLRDLPWLALTSFYRN--EVALQKIDDGQPVNLAITPRLSSDSLYAVRKAALAGMGAAIV 246

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             + V++   + +LV+++     P   V+  YP A     +L+ F
Sbjct: 247 SSWAVQEDLADGDLVQLVPAWQAPPLPVWLTYPWASYYPARLQHF 291


>gi|149920140|ref|ZP_01908613.1| putative transcriptional regulator protein, LysR family
           [Plesiocystis pacifica SIR-1]
 gi|149819083|gb|EDM78520.1| putative transcriptional regulator protein, LysR family
           [Plesiocystis pacifica SIR-1]
          Length = 301

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 8/287 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +  +GS T AAE L L ++++SR+++ LE  +G++L +R  R +TLT  G  LH+  
Sbjct: 10  FITIVDAGSLTAAAEVLDLPRATLSRRLAKLEQRLGVRLLHRTTRRMTLTPAGQLLHQRA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +       + E++     P G LR++    L        L  FL  YP++ ++ +  +
Sbjct: 70  RVLVEGARDVEAEVRRLDGVPRGLLRVSVPSTLAHEFFARWLTAFLQAYPEVSLEFVATS 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             +D+  +  D A+R R PI   SLI R +      A A+P YL+    P +  ELD HN
Sbjct: 130 LHVDLVAEGFDLALR-RGPIDDPSLITRSMSVDTSIAVASPAYLERAGTPTTPAELDAHN 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            I       +    +  LA     +       L  N         + G GIAL+  Y   
Sbjct: 189 CIVGYRAGRQPERRWPLLAGGSVTVS----GSLATNDIELRRAVALSGLGIALISAYSAH 244

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              D   L+ ++ + +     V   Y E      K++AF +F   + 
Sbjct: 245 ANLDQGELIHVLPEHVGARERVNLVYVEREFLDPKIRAFVDFFVTEL 291


>gi|192360587|ref|YP_001982765.1| LysR family transcriptional regulator [Cellvibrio japonicus
           Ueda107]
 gi|190686752|gb|ACE84430.1| transcriptional regulator, LysR family [Cellvibrio japonicus
           Ueda107]
          Length = 309

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 124/293 (42%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   A SGSF+ AA +L L+ +++SR ++ LE  +G++LF+R  R L LTE G
Sbjct: 3   TLANLESFVRSAESGSFSAAARRLALTPAAVSRNVAMLERNLGVRLFHRSTRKLALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  S     L+     +     +P+G L+++     G + L   L  FL  YP I+
Sbjct: 63  EHFLASVSGNLAALQEAIAAVSVEEGEPTGVLKVSLAPSFGVSHLLPLLPTFLARYPRIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +   +N+ +D+  +  D AI     +    L+ R L   H+ A A+P YL     P+  
Sbjct: 123 PEWHFENRAVDVVAEGYDAAIGGGFDLM-PGLVARTLAPAHIIAVASPAYLAGLTPPVEP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L   + I    L    +  +         +       + VN   ++ +   LG G+AL
Sbjct: 182 SGLVALDGIVMRSLSTGRIRTWVMRNARGDEVTAALRETIVVNDPAALREAARLGLGVAL 241

Query: 244 L--PDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L  PD +   ++  L+R++      +  +   Y        K + F +++   
Sbjct: 242 LAVPDVLPCLESGELIRVLPQWWADAGAISLYYASRNLLPRKTRVFIDYVVEA 294


>gi|209549780|ref|YP_002281697.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535536|gb|ACI55471.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 304

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 134/289 (46%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E+G++L  R  R L+ T+ 
Sbjct: 2   LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSPTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +S+    +E   + L E+  +P+G +RI+  +  G + LQ  + + L  YP  
Sbjct: 62  GRLYYEESSQALRAIEGANLRLAEARTEPAGTIRISAPVGFGGHFLQDAIFDLLATYPKS 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++  +  D A R    ++ S+LI RKL + H    A+P YL  C  P  
Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRTG-ILEDSTLIARKLGSTHRLLCASPDYLARCGAPDR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H+ +  G            L                 N   ++M   + G GIA
Sbjct: 181 PADLVRHDCVVAGQSTHAQW----LLEGPHGQETVSVSGRFAANEMQAVMAAAIAGYGIA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP  +      +  L R+++   TP   ++  YP +      +K F  
Sbjct: 237 RLPHGVANTCIRDGRLCRVLDGYTTPVGGLHVVYPSSRHLPPLVKTFIE 285


>gi|13474286|ref|NP_105854.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025038|dbj|BAB51640.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 306

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 125/296 (42%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + VF  V   G+ + A   + +S +  S +I  LE  +G++LF R  R L  TE G+
Sbjct: 4   LDNIAVFVRVVELGNLSAAGRDMRISPAVASNRIKELEKHLGVRLFNRTTRQLMPTEHGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +V   +   +  +   S +P G +R+   + LG+ L+   + +F   YPDI++
Sbjct: 64  VFYSGAKQVLEAITEAEAAVSALSGQPRGTIRVTAPLGLGRRLVASGIPDFHDKYPDIEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L + ++DI  +  D A RL   I+ SSL  R ++       AAP YL+   EP   Q
Sbjct: 124 RLRLSDHNVDIMKEGIDVAFRLG-IIEDSSLRMRGIMECERVLVAAPKYLEARGEPAEPQ 182

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL   KH+ +          E    L T   P           +    +  + + G GI 
Sbjct: 183 ELIGKKHDCLML--RYSGAREYVWTLQTPTGPQKFEVHGPYDTDDGDVLTGWALSGRGII 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             P + V+    +  L  I+ +           YP       K++   +F+  + +
Sbjct: 241 NKPRFEVEPFIRDRRLQVILANTPPTPVQFAAVYPHKKLQDPKVRLLLDFMAERCQ 296


>gi|330950994|gb|EGH51254.1| LysR family transcriptional regulator [Pseudomonas syringae Cit 7]
          Length = 315

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 13/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILASVEEAEAEASDAHARPAGQLKVHSMPGVGQHYVIDAIARYRRSHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K      
Sbjct: 121 VAFDLTMTHRVPDLLEEGYDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
              +L  H  +    L+        WL   D P G+  +    S L VNS  ++      
Sbjct: 181 KPADLLNHACL---RLVSPVFPLDKWLF--DGPEGQEMVTINSSPLLVNSADAMKTAISS 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI +LP Y   +   N  LVR++ D  +    +Y  YP       K++ +  ++
Sbjct: 236 GMGIGILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPSRQYLDAKIRTWVEYL 291


>gi|308188530|ref|YP_003932661.1| hypothetical protein Pvag_3063 [Pantoea vagans C9-1]
 gi|308059040|gb|ADO11212.1| Uncharacterized HTH-type transcriptional regulator yafC [Pantoea
           vagans C9-1]
          Length = 322

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 126/285 (44%), Gaps = 6/285 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D ++ F  +  SGS + AA QL  +Q ++SR++  LE  +G+KL  R    L LT+ G 
Sbjct: 10  IDLMQTFIRIVESGSLSAAAAQLGTTQPTVSRRLQTLEQRLGLKLILRTTHALKLTDDGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++       + EL  +S  P G LR+      GQ+ L   L ++L  YP + I
Sbjct: 70  RCYAQARQLLATWHALEDELTGASDDPVGTLRVRAPHAFGQDQLIAPLVDYLHRYPRLNI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L+++  D   +  DCAI++  P    S++   L  +     AAPH L        + 
Sbjct: 130 EWMLNDRTPDFMAENVDCAIQVGAP-TDPSVVAILLAEVPRIVVAAPHLLAQHPPIERVA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +          E         +P+       L  +S  ++ +  + G G A++
Sbjct: 189 QLRDLPWLALTSFYRN--EVALQKIDDGQPVNLAITPRLSSDSLYAVRKAALAGMGAAIV 246

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             + V++   + +LV++M     P   V+  YP A     +L+ F
Sbjct: 247 SSWAVQEDLADGSLVQLMPAWQAPPLPVWLTYPWASYYPARLQHF 291


>gi|170735582|ref|YP_001776842.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817770|gb|ACA92352.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 315

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 128/303 (42%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFSRVVETGSFTAAAQSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   ++   ++  + E   +  +P+G LR+ +   +G + +   L  +   +PD
Sbjct: 61  AGESYLRRCRQILADVDRAEEEASCAHERPAGVLRMHSFASVGHHYVLPTLTRYHAQFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L  +  D+    +D A+     +  S L+   L +      A+P Y+K    P 
Sbjct: 121 VSIELSLSQRMPDLFDGTSDTAVVTASSLPDSELVSHLLGSTFSILCASPDYVKRHGVPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +T         E    L   +          +Q N+  S+      G GI
Sbjct: 181 RQQDLAAHACLTLCTPAFPTHEWV--LEGPEGVEQIHVAGPVQTNTAESLALAIRDGIGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----- 293
            +LP Y   D   + +LVR++   I     VY  YP       K++ +   +  +     
Sbjct: 239 GMLPLYSAIDALRDGSLVRVLPAHILQKMNVYALYPSRRFVDAKVRTWVEMLRAQVPTMI 298

Query: 294 ARD 296
           ARD
Sbjct: 299 ARD 301


>gi|298293680|ref|YP_003695619.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296930191|gb|ADH91000.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 301

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 126/296 (42%), Gaps = 10/296 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD   L    V   V   GSF  AA  L L+ S +SR I  LE  + ++L  R  R +
Sbjct: 1   MAFDGRVLAGVGVLAAVVEGGSFVRAATLLGLTASGVSRAIGRLEARLHVRLLDRTTRAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +         +E     +  S     G+LR+         +L G L  F  
Sbjct: 61  TLTDEGRRFYEEVRPHLAAMEEAAAAVSGSGGVVRGRLRVDVDPFFLPLVLAGRLGIFCD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ I+ +   +  D+  D  D AIR  +P + ++L+ RKL+   +   AAP YL   
Sbjct: 121 RHPDLAIEFVSSERLGDLVSDGIDLAIRFGEP-RHTALVSRKLIEAPILTVAAPAYLARF 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCV 236
             P    EL  H  + F D  P     + W     R  +       L   +  ++++ C+
Sbjct: 180 GAPAHPSELSTHRCLQFVD--PHSGRPYPWEFVKGRQKLPVETRGPLTFTNPQALLEECL 237

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G+G+A +  + V        LV +        F +Y  +P       K++AF +F
Sbjct: 238 AGTGVAQVIGWGVGQLLKEGRLVDLFPAWHGERFPLYALHPSKKHVPAKVRAFIDF 293


>gi|269967187|ref|ZP_06181252.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|269828177|gb|EEZ82446.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 311

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 129/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L LS ++++ ++  +E   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMTLFASIVKHQGLAAAGRELGLSPATVTARLQAIEERYGVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+    +   ++ T+  LQ    +  G L+I+   D+G+ ++   +  F   YPD
Sbjct: 61  AGAMYHQACLNIIDSVKETENLLQTGISEVRGTLKISAPRDIGKQIISPMVSAFSEQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  S+LI RKL +      A+P YL     P 
Sbjct: 121 VTPYLYLNDNLSNLAESGLDLVIRYGE-LADSNLISRKLASSQRVLCASPDYLSKQGVPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
             Q+L  H  +    ++    E   W    +       ++  +  +    I Q+ + G+G
Sbjct: 180 CPQDLAVHRCLA---MVRSNEELKTWHFKDEESHQSITVTPKRFSDDGEVIRQWALDGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDV--------ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     ++ +     LV +++                ++  Y        +++ F +F
Sbjct: 237 IALKSILDIQQDLKKQRLVTVLDGYMKNFSAFSQGAEADLHVIYQSRQYQPKRVRLFLDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LVEQ 300


>gi|71734577|ref|YP_273368.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257487441|ref|ZP_05641482.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289647230|ref|ZP_06478573.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|289678260|ref|ZP_06499150.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
 gi|298485772|ref|ZP_07003851.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|71555130|gb|AAZ34341.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298159798|gb|EFI00840.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|320325797|gb|EFW81858.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327285|gb|EFW83299.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330887760|gb|EGH20421.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330899569|gb|EGH30988.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330938866|gb|EGH42384.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           pisi str. 1704B]
 gi|330988344|gb|EGH86447.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331008966|gb|EGH89022.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 315

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 13/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILASVEEAEAEASDAHARPAGQLKVHSMPGVGQHYVIDAIARYRRNHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K      
Sbjct: 121 VAFDLTMTHRVPDLLEEGYDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
              +L  H  +    L+        WL   D P G+  +    S L VNS  ++      
Sbjct: 181 KPADLLNHACL---RLVSPVFPLDKWLF--DGPEGQEMVTINSSPLLVNSADAMKTAISS 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI +LP Y   +   N  LVR++ D  +    +Y  YP       K++ +  ++
Sbjct: 236 GMGIGILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPSRQYLDAKIRTWVEYL 291


>gi|194292341|ref|YP_002008248.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193226245|emb|CAQ72194.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 585

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 124/278 (44%), Gaps = 7/278 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V R GSF  AA +  ++  + S+ +  LET +G++L +R  R L+LTE+G++L 
Sbjct: 7   LTLFLGVVRVGSFRRAAVEAGVTPQAASKAVRTLETYLGVRLLHRTTRKLSLTEEGARLF 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +T+    +L+    +++ S  +  G +R+     LG  +L   +K F   +P I   ++
Sbjct: 67  ELTAPGMRQLDEALEQVRASRSEDDGLIRLTAPPSLGSRVLVPLVKGFREQHPGIGFDVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   D+     D   R+       +L+ R+L  + +   AAP YL     P ++ EL 
Sbjct: 127 LSDLFTDLVEARIDVGFRVGTS-PGQNLVARRLCDLPLVICAAPDYLARHGAPATLDELM 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
           +H    F    P       W   VD  +    I  +   N   + ++    G GI  LP 
Sbjct: 186 RHPCTGFRR--PATGRMVPWELHVDGNLVYREIPAVASFNDVETEVEAVRAGIGIGQLPA 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTG 281
           Y+V D+     L  I+    +    +Y  YP   +  G
Sbjct: 244 YMVHDDLVSGRLRAILPGYSSSQVGLYMYYPHRSQMPG 281


>gi|167569585|ref|ZP_02362459.1| probable transcriptional regulator [Burkholderia oklahomensis
           C6786]
          Length = 290

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 130/294 (44%), Gaps = 10/294 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   G F+ AA    ++ S++S+ ++ LE  +G +L  R  R   LT +G   +   
Sbjct: 2   FVRVIELGGFSAAARACGMTPSAVSKLVTRLEQRLGTRLVNRSTRQFQLTPEGCAFYERG 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +   LE  +     +   P G+LRI   +  G + L   + EFL L+PD+ + ++L +
Sbjct: 62  VRILADLEEAER-CASAYTTPRGRLRINANVPFGHHFLLPLVPEFLELHPDVTLDIVLTD 120

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + IDI     D A+R   P++SS+L+ RKL    M    AP YL     P + +EL  HN
Sbjct: 121 EVIDILEQRTDVAVRAG-PLKSSNLLARKLGDTRMVIVGAPGYLTRHGMPATPEELLAHN 179

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            +       +       L   +  +  P     Q +   ++    + G G+A L  + V+
Sbjct: 180 RLGANYARARSGWP---LRNANEDVVLPVTGNAQASDGEALRHLALAGVGLARLAAFQVR 236

Query: 251 DN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKARDWKF 299
           D+     L+ ++E+        V+  Y  +      +++A  +F+  +    +F
Sbjct: 237 DDIVAGRLLPVLENCNPGDVEEVHAVYVGQGGYLPLRVRALLDFLADRVDLGRF 290


>gi|294502709|ref|YP_003566771.1| LysR-family regulatory protein [Yersinia pestis Z176003]
 gi|262360738|gb|ACY57459.1| LysR-family regulatory protein [Yersinia pestis D106004]
 gi|262364685|gb|ACY61242.1| LysR-family regulatory protein [Yersinia pestis D182038]
 gi|294353168|gb|ADE63509.1| LysR-family regulatory protein [Yersinia pestis Z176003]
          Length = 304

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 133/286 (46%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GSFT AA+ L L ++ +S+++S LE  +G++L  R  R L LTE G    
Sbjct: 1   MTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++  +  L+  SV+P GKLR+   + + + ++  +L EF   YP+I ++L 
Sbjct: 61  AKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++   +  +  DCAIR    ++ SS I R +  +H+  YAAP YL+        QEL 
Sbjct: 121 GSDRISHLLDNGIDCAIR-GGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTHPQELS 179

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  I++          F W L +       P    L  +     +  C+ GSGI     
Sbjct: 180 VHRRISW---FTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPGAP 236

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + V+       LV ++      +  ++  YP     + +++ F ++
Sbjct: 237 FAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDW 282


>gi|222084632|ref|YP_002543161.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722080|gb|ACM25236.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 301

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F  VA +GS + AA +L LS+S +S +++ +E  +G  L +R  R LTLTE G+
Sbjct: 4   IEGLTAFVTVAEAGSISEAARRLRLSKSVVSERLAEMEKTLGATLLHRTTRKLTLTEDGT 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 + +  ++     +L E     +G LRIA  +  G+  L   L  FL  +P+I++
Sbjct: 64  VFLERATRIVREVREAAADLAERRGTLAGPLRIAAPVTFGRMHLGPVLYPFLAAHPEIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L LD++ +D + D  D  IR    I  S L+   L        A+P YL+    P S  
Sbjct: 124 TLELDDRRVDAASDGYDAIIRHGL-IADSRLVAWPLARSRRLLVASPDYLRQHGMPASPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  I + +   + + D+ +       I   ++  L +N+        + G GIALL
Sbjct: 183 DLENHRGIFYTN---RGIADWRFQGPEGAVIVRGKL-ALGINNGDVSRDAAIAGLGIALL 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P +I     +   LV I          V+  +PE    + KL+A  + +
Sbjct: 239 PAFIAGPSVNEGLLVDIDVGCRPEPEFVFMAHPEGRNPSAKLRAIADHL 287


>gi|161613847|ref|YP_001587812.1| hypothetical protein SPAB_01582 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363211|gb|ABX66979.1| hypothetical protein SPAB_01582 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 301

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVSRPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGKDYAIRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++  +    +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNH-SYDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|190889957|ref|YP_001976499.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695236|gb|ACE89321.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 322

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 119/296 (40%), Gaps = 10/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + SF  A E+L +++S++S+ +  LE  +G+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARSFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G            ++      +++   +PSG LRI  +      L    L  F+   P
Sbjct: 61  EAGEVFFAAVRPSVRQVRDAMQTVRDMQARPSGLLRITVSSIAESFLSGTLLAGFMQACP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + + + DI     D A+RL + I+   +           A A+  YL+    P
Sbjct: 121 EIKLDITVTDDEFDIVETGFDAAVRLGEVIEQDMIAVSVSEPQRQCATASTAYLERHGGP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  I +          +      +R         +  N    +++    G+G
Sbjct: 181 RHPGELRNHACIGWRPRPDTAPYRWE-FTENNRDFDVAVDPAVTTNDMGMMIRLACAGAG 239

Query: 241 IALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I      +V+      D   LV ++ED   P    Y  YP   +   KL+A    I
Sbjct: 240 ITFG---MVETFQPYFDRGELVPLLEDFCPPFPGFYLYYPRRERQPLKLRALVEHI 292


>gi|157376746|ref|YP_001475346.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319120|gb|ABV38218.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 293

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 137/287 (47%), Gaps = 10/287 (3%)

Query: 1   MSFDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  + D    +R F VV    SF+ A+ +L++  S++SRQ++ LE     +L YR  R +
Sbjct: 1   MKRNIDLITAMRTFLVVVERHSFSAASRELNIVVSAVSRQVADLERHFNCQLLYRTTRAM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT +G    R   E+  +L+  +   +      +G L+I T  +      Q +++EFL 
Sbjct: 61  HLTSEGEHYLRQFQEIIARLDNLESFSRHRGEIIAGHLKITTPQNSALIGFQSSIQEFLT 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           L+P +++  +  N+ +D+  +  D A+R+ K ++ S+L+ R      +   A+P YL+  
Sbjct: 121 LHPRVKVSWLQMNRYVDLVDEGVDLALRVGK-LEDSNLVARPFGEFTLKFVASPEYLRVN 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P    +LDKH  I            +      D+       + ++VN+   + Q+ V 
Sbjct: 180 GTPSHPSQLDKHRCILDSSNRHPGRWQYQ---GSDKEELVRVSADVEVNNGQMVAQFAVA 236

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTG 281
             G+A LPD++++D+     LV I+E+   PS  +Y  YP     + 
Sbjct: 237 DQGVAQLPDFLLQDHIDSGRLVSILEEFAMPSIPMYLVYPAKRMKSP 283


>gi|88861493|ref|ZP_01136115.1| probable transcriptional regulator [Pseudoalteromonas tunicata D2]
 gi|88816508|gb|EAR26341.1| probable transcriptional regulator [Pseudoalteromonas tunicata D2]
          Length = 230

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/230 (41%), Positives = 145/230 (63%), Gaps = 1/230 (0%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWDKL++F+ VA + SFT A+  L+LSQS+ISRQI  LE+++ ++LF RHARGL LTE 
Sbjct: 1   MDWDKLKIFHTVAEASSFTKASTILNLSQSAISRQIQALESDLKVQLFERHARGLVLTEN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   E+  KL+  +  L     K +GKL + T +  G   L   +KEF+ L+PDI
Sbjct: 61  GEYLYKSAHEIISKLKDVESNLSGHKDKLNGKLTVTTVVSFGTTWLTPRIKEFMDLHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+LI D+K++D+S   AD AIR+R+P Q  +LIQ+K V  + H Y +  YL+    P +
Sbjct: 121 EIELIFDDKELDLSTREADVAIRMRRPKQ-LNLIQKKFVDFNYHIYGSNDYLQKNGYPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           +++LDKH  IT+G   P  + + +W+       G+ R S ++VNS   ++
Sbjct: 180 LKDLDKHKFITYGKGAPSPVYNPDWVLKHGVKDGKKRKSIMKVNSVYGLL 229


>gi|295676164|ref|YP_003604688.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436007|gb|ADG15177.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 307

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/310 (26%), Positives = 142/310 (45%), Gaps = 19/310 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L VF  V  SGS T AAE+L  + S +SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTSTDELLVFVTVIDSGSITAAAEKLGQTVSGVSRALTRLEQKLDTALVRRTTRRLHLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    R    +   LE  +  +     +PSG+LR+        + +  ++  F  LYP
Sbjct: 61  EEGDAFLRRARAILDALEEAEESVARGRERPSGRLRVDAASPFMLHCVAPHMTAFSALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L    + +D+     D AIR+   +Q S+L  R L    +   A+P YL    EP
Sbjct: 121 EIRLELTSTERIVDLLEQKVDIAIRIGA-LQDSTLHARALGESRLRVLASPAYLAEHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLA----------TVDRPIGEPRISCLQVNSYLS 230
            ++  L  H LI F    P+ +  +   A            D          +  +S  +
Sbjct: 180 TTLDALRAHRLIGF--TAPEHLNRWPLTAGGRRTKRANGQRDEAALLKIEPSITASSGET 237

Query: 231 IMQYCVLGSGIALLPDYI----VKDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKA 285
           + Q  + G GIA L D++    V+++  LV I+ +++      V+  Y ++    G+++ 
Sbjct: 238 LRQLALSGWGIACLADFMTAADVREH-RLVPILGNLLVDERQPVHAVYYQSASLAGRVQC 296

Query: 286 FRNFIFLKAR 295
           F +FI  + +
Sbjct: 297 FLDFIAARVK 306


>gi|302878706|ref|YP_003847270.1| transcriptional regulator, LysR family [Gallionella
           capsiferriformans ES-2]
 gi|302581495|gb|ADL55506.1| transcriptional regulator, LysR family [Gallionella
           capsiferriformans ES-2]
          Length = 311

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 4/299 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   A SGSF+ AA +L L+  +ISR ++ LE  +G++LF R  RGL LTE G
Sbjct: 3   TLANLESFVRSAESGSFSAAARRLSLTPGAISRNVAYLERNLGVQLFQRSTRGLALTESG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +        ++    ++  ++ +P+G L+++  +  G   L   +  FL  YP + 
Sbjct: 63  ERFLQSVQGGLDSIQGAIADVMVNAGQPAGMLKVSAPLSFGMEFLLPLMPAFLERYPAVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D   D  D A      +    +  R+L  +H+ A A P +L   R P   
Sbjct: 123 TDWHFDNRPVDFIADGYDAAFGAGFELP-PGMKARELARVHLIAVATPAFLHGKRRPKDP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +   +            +         +   +   + VN+  ++    + G G+ L
Sbjct: 182 SELAELAGVVMRSADNNRAITWVMRNRSGTEVAAVQKPVMIVNAPDAVCCATLQGLGVGL 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +         ++  L R++ D  +    +   +        K +AF +FI    R  K 
Sbjct: 242 VAVPHAAPHLESGALERLLPDWHSDVGPISLYFSSQKLLPPKTRAFVDFIIEGLRAQKL 300


>gi|149188287|ref|ZP_01866581.1| putative transcriptional regulator, LysR family protein [Vibrio
           shilonii AK1]
 gi|148837876|gb|EDL54819.1| putative transcriptional regulator, LysR family protein [Vibrio
           shilonii AK1]
          Length = 311

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 130/307 (42%), Gaps = 17/307 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A   L LS +S++ ++  LE   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMEMFASIVKHQGLAAAGRDLGLSPASMTARLQALEERYGVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   ++   +   +  +Q    +  G LR++   D+G+  +   L EF   YPD
Sbjct: 61  SGELYYKACLDILDNVNEVENIIQSGVKEVKGALRVSAPKDIGKQYIVPILNEFSERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  S+LI R+L +      A+P YL     P+
Sbjct: 121 VIPYLYLNDHLSNVNESGMDIVIRYGE-MADSNLISRRLASSRRVLCASPEYLAKRGTPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L  H+ +    ++    E   W    +       ++  +  +    I ++ + G+G
Sbjct: 180 TPQDLVGHDCLV---MLRHNEELKTWHFRENDQRKSITVTPKRFSDDGEVIRRWALEGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDV--------ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+ +     LV ++              S  +   Y        +++ F +F
Sbjct: 237 IALKSLLDVQADINHRRLVTVLNGYMKNFNASTTVSSADLNVVYLSKKYQPKRIRLFLDF 296

Query: 290 IFLKARD 296
           +F +  D
Sbjct: 297 LFEQFPD 303


>gi|291615879|ref|YP_003518621.1| YeaT [Pantoea ananatis LMG 20103]
 gi|291150909|gb|ADD75493.1| YeaT [Pantoea ananatis LMG 20103]
          Length = 310

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 128/295 (43%), Gaps = 10/295 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VA  GS T AA  L LS +++S+++S LE  +G++L  R  R L LT +G +
Sbjct: 13  DDLAFFLRVASLGSLTAAARALGLSLAAVSKRLSLLEQRLGVQLLRRTTRKLELTPEGRR 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   +  +   + +  G L I  +   G+  +   +  F  L+P + + 
Sbjct: 73  YLEGARPLLEQLVALEDAVSGETAELRGTLNINASFGFGRRHIAPCVSAFAALHPHLALS 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ++    + D  IR+ +P   S L+ RKLV        +P Y      P SI+ 
Sbjct: 133 LQLSSQPLNFLDAHVDIDIRVGEP-PDSRLVARKLVHNPRVLCCSPAYAAKHGLPDSIRA 191

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +HN I    L+ +   DF  W    D   + +     L  N     M+  + G GI L
Sbjct: 192 LAQHNCI----LLRQHDSDFALWRFVGDAESLSQKVRGNLVTNDGEVAMRMALDGHGILL 247

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              +  K +     L  ++ +  +P   ++  +    +   +L AF  F+  + +
Sbjct: 248 RSWWDAKHSIAAGELRHVLPEWRSPDGDIFAVWQAQRQQPSRLMAFVTFLQERLQ 302


>gi|229528207|ref|ZP_04417598.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229334569|gb|EEO00055.1| transcriptional regulator [Vibrio cholerae 12129(1)]
          Length = 312

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+   +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLVQRGTPVHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALMAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|226951991|ref|ZP_03822455.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226837259|gb|EEH69642.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 300

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 124/296 (41%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F VVA+  SFT AA +L  SQS+IS+ +  LE  +GIKL  R  R +  T
Sbjct: 1   MKENLNDLHTFIVVAQERSFTRAAAKLRTSQSAISQTLRNLEDRIGIKLLSRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L  +      ++E    +L      P+G LRI+      Q +L   +++ +  +P
Sbjct: 61  EAGEYLLSLIQPAIAEIEHGMNQLSALKNDPAGTLRISADEYGIQTVLWPAIEKVIQQFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +++  D   +DI     D  +R    +    +  +    I M A A   YL+    P
Sbjct: 121 KISVEITSDYGLVDIVDGRFDAGLRRGGLVSKDMIALQISDPIPMLAVANKEYLQRYGHP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              ++L +H  I     +P   E + W  T         ++  +   +   ++Q    G+
Sbjct: 181 KQPKDLVEHQCINL--RLPTHGELYRWQFTKGNKTQSVNVNAKIVFTTLSPVLQAVRSGA 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA LP  +V+   ++  L   ++D        +  YP   +    L    N +  
Sbjct: 239 GIAYLPIDMVQPYIESGELEETLKDWQHRYEPYHLYYPHRREQAPLLNILINALKE 294


>gi|166712547|ref|ZP_02243754.1| transcriptional regulator, LysR family protein [Xanthomonas oryzae
           pv. oryzicola BLS256]
          Length = 338

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLAKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKH-NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H  + T  D   +  E       + R   +PR++      +  +      G GI
Sbjct: 188 PSELANHTTMSTSEDEAHQRWELHGPNGEMRRVDLQPRLAGF---DFPLLQSMARDGVGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP+ +  +   +  L  ++     P    +  +         ++ F +F+  
Sbjct: 245 TMLPETVCAEAVRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 298


>gi|317494219|ref|ZP_07952635.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917992|gb|EFV39335.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 306

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 130/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT A  QL +S SSIS+ IS LE E+ IKL  R  R + LTE G 
Sbjct: 4   LKRMAVFAKVVECGSFTSAGRQLEMSVSSISQTISKLENELNIKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++  + +    ++   +  P+G LRI ++  + QN++       L  YP + I
Sbjct: 64  IYYQGCRKMLLEAQEVHEQIYAFNNTPTGTLRIGSSSTMAQNVIAPMTARMLREYPGLSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  +R+   +Q SSL  ++L ++ M   AA  YL+    P    
Sbjct: 124 DLVTGVPAPDLIADGLDLVVRVGA-LQDSSLFSKRLGSMPMVVCAAKSYLQQQGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + +T+         +F  +A   + +          N   +++++   G GIA +
Sbjct: 183 DIASFSWLTYSVRPDS---EFELIAPEGQTLRLSPQGRFVTNDSQTLIRWLCAGVGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +I+ +     +  +     +    VY  Y +  K   K++   N++  
Sbjct: 240 PLMWIIDEIKRGEVEILFSRYQSDPRPVYALYTQKDKLPLKVQVCINYLTE 290


>gi|301629584|ref|XP_002943918.1| PREDICTED: uncharacterized HTH-type transcriptional regulator
           ycaN-like [Xenopus (Silurana) tropicalis]
          Length = 435

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/291 (29%), Positives = 134/291 (46%), Gaps = 12/291 (4%)

Query: 1   MSFDWDK---LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MSFD      + V   V  SGSF  AA+ L ++ S +SR IS LE  +GI+LF R  R +
Sbjct: 1   MSFDPGLAGGMGVLAAVVDSGSFARAADSLEMTPSGVSRAISRLEKRLGIRLFDRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT++G + ++  + +   LE       +S++   G+LR+       + +L   L EF+ 
Sbjct: 61  QLTDEGRRFYQEIAPLLAGLEEAASSAADSALTVRGRLRVNIDPYFSRLVLGPVLGEFMS 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP +Q+ L   ++  D+  D  D AIR   P QSSSLI RKL+ + +   A+P YL+  
Sbjct: 121 QYPQLQLDLHTRDQLGDLVADGFDLAIRFGIP-QSSSLIARKLMEVRVLTLASPDYLERH 179

Query: 178 REPLSIQELD--KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQY 234
             P   ++L+  +H  I F D   +    F W        +       L VN   ++   
Sbjct: 180 GRPTHPKDLEDGQHVCIDFRD--SQTGRPFGWEFHRPGEHVNVATSGRLVVNDAGTLYSV 237

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           C  G  +A + D  +    ++  LV +  D     F +Y  YP       K
Sbjct: 238 CEHGHAVAQMLDLGLAPALESGALVELFPDWPDERFPLYAFYPSRHLPAAK 288


>gi|261251262|ref|ZP_05943836.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260938135|gb|EEX94123.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 304

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 134/296 (45%), Gaps = 10/296 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F ++   GSFT AA+QL+++ S++S+ ++ LET + +KLF R  R L +T  G ++
Sbjct: 12  DLASFILIVDEGSFTAAAKQLNVTPSALSKLVTRLETSLSVKLFERTTRKLIITRAGQQV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     + +  +        +  + SG L +A       ++LQ ++  FL  YPDIQ++L
Sbjct: 72  YDQAMVMLNAAKQAVELSTSAHEEMSGALTVAAPEAFLNSVLQPHVVPFLQKYPDIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + + +ID+  D  D A +L       +L+ R++   ++   A+P Y+     P    EL
Sbjct: 132 RVADGEIDLIRDGIDVAFKLTDK-PDENLVLREVSKTNLVLCASPDYIAQKGMPEHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++H+ +   +     + DF      D            VN     +       GI +  D
Sbjct: 191 EQHDCLYLAENDRDHIWDF---FKDDEYHSVSVSGRYAVNHSQMRLTGVKNALGIGIFHD 247

Query: 247 YIVKDNP---NLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +++ D      +V ++ D    S     +   YP+      +L+ F ++I  + R+
Sbjct: 248 FVIADAIAQKQVVPVLSDWTIKSNYHGAIAMQYPQTKYMPARLRGFIDYITEQLRN 303


>gi|221197007|ref|ZP_03570054.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203680|ref|ZP_03576698.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175846|gb|EEE08275.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183561|gb|EEE15961.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 300

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V     F  A+  L + +S++SR+I+ LE  +G++L  R  R  ++TE G
Sbjct: 3   DLNDLYFFAQVVDYKGFAPASRALGIPKSTLSRRIAMLEARLGVRLVQRSTRRFSITEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +  ++E  Q  +   + +P G +R+   + +    +   L EF+   P + 
Sbjct: 63  QRYYTHCKAMLVEVEAAQQAIDRITGEPQGIVRVTCPVAMLHARIGAMLAEFMAATPRVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P+Q S L+ R L        A+P  + + R    
Sbjct: 123 VHLEATNRVVDVVGEGIDLAIRVRPPPLQDSDLVMRVLGERAWCLLASPALIGD-RTVAM 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +LD    + FG   P+     +    V              +  +S+    V G+GI 
Sbjct: 182 PADLDGWPSLDFGPAQPQHTWQLDGPDGVH--AAVRHTPRFVTDDMISLRHAAVAGAGIV 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP  +V D      LVR++ +    S  ++  +P        ++A  +F+
Sbjct: 240 QLPLMMVADELRRGELVRVLPEWAPKSGIIHAVFPSRRGLLPAVRALVDFL 290


>gi|146340987|ref|YP_001206035.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146193793|emb|CAL77810.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 299

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 133/296 (44%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L+ F  V  +GSFT AA  L L Q +I+++I+ LE + G +LF R  R L  T 
Sbjct: 1   MDRIDALQTFIRVMEAGSFTQAAADLGLGQPAITKRIALLEEQFGCRLFVRTTRKLRPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +  ++ ++  ++    E+  +        PSG LR+      G+        E+   YPD
Sbjct: 61  EADRVLKLAKDIVTLFESAGVPSPRRVGAPSGTLRMTVPTSFGRYFFADIFAEYGRRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +    + +D+     + AIR+   + SSSL+ R++ T+     AAP  L   R P 
Sbjct: 121 VRLDIRFTEQVVDLVETGTELAIRIG-VLSSSSLVARRVGTVKRLLAAAPSLLARHRPPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +   +T+  L PK    F            P    L  +    +    + G G 
Sbjct: 180 LPNDLRQLPCVTYSRLSPKNEWSFESETGRHVVGITP---TLTCDDADIMTLAALEGLGA 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+LPD+   ++     L+ ++ D   PS  ++  YP+    + + + FR+ I  +A
Sbjct: 237 AVLPDWCAVEHIASGRLIHLLPDYDVPSLPLHVVYPDPQWTSHRARLFRDLIIERA 292


>gi|83717422|ref|YP_440303.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651247|gb|ABC35311.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 302

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 115/292 (39%), Gaps = 6/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  V   GSF  AAE   +S + ++++I  +E  +G +L +R  R   L++ G 
Sbjct: 7   LADMEMFVRVVECGSFAAAAEASQVSATMVAKRIQAIEARLGARLLHRTTRRQQLSDVGQ 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                      ++E  +    E    PSG LRI   +  G   L   L E++ L+P +++
Sbjct: 67  LYFERCRRALAEVELAESSAAELHATPSGVLRIVAPVGFGSYSLVPALAEYMALHPQVRV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L LDN          +  + + + I +  L+ R L        AAP YL     P   +
Sbjct: 127 DLTLDNDPPRFWQGDFELGVHIGE-IDAPGLVARPLKPYRRQLAAAPAYLARHGTPKRPE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  +       +  + +  +                 N   ++    + G GI L 
Sbjct: 186 QLSEHVCLGLS--YWRRRDRWRLVGPRGEVRDVAVRGGFTANHGDALRVAALQGLGIVLQ 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  ++  +     LV ++         +Y  Y +  + T KL++  +F+  +
Sbjct: 244 PQAVLTGDLAAGRLVPVLPAWSLAPSPMYLVYAQDRRPTAKLRSAIDFLLAQ 295


>gi|182679698|ref|YP_001833844.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635581|gb|ACB96355.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 311

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 136/294 (46%), Gaps = 11/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VA +GSF+ AA  L L+Q ++SRQ+S LE  +  +L +R    L LT +G ++
Sbjct: 6   ALRTFLRVAETGSFSAAAVDLKLTQPAVSRQVSALEAHLDTRLLHRSTTALALTSEGERM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  +V   +E    E        SG++R++    LG   +   L   L  +P + ++L
Sbjct: 66  IPMALKVIEAVE-ALGESAGQVGTASGEVRLSVPAPLGLY-MSDRLAALLDHHPQLSVEL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +   +  D+     D  +RL   I  SSLI R++        A P YL+    P ++++L
Sbjct: 124 LFREEPSDLVGQGIDLEVRLGN-IADSSLICRRIGWTTAFLVATPAYLEKRGTPRALEDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
             H+ I +     +  +  +WL +        RI+  L VN+ +++ +  + G+GIA+L 
Sbjct: 183 SHHDCICYK----RGGDSRSWLFSNGADEVAVRIAPRLIVNNAVAVHRAVLAGAGIAILS 238

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +   +     L+ ++ D       +   YP       +++A  +++    R+
Sbjct: 239 HILAVPDIETGRLISLIPDFPPARLPITLAYPSRRNMPFRVRAVIDYLVAAMRE 292


>gi|119468390|ref|ZP_01611481.1| putative Transcriptional regulator, LysR family protein
           [Alteromonadales bacterium TW-7]
 gi|119447898|gb|EAW29163.1| putative Transcriptional regulator, LysR family protein
           [Alteromonadales bacterium TW-7]
          Length = 307

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 127/298 (42%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +++L+   VF  +   GS T AA+QL L+++  S  +  LET++ + L  R  R +
Sbjct: 1   MKVSFEQLKSMVVFAQIVEQGSLTAAAKQLGLTRAVASYHLKKLETQLEVTLLNRSTRTM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLTE G   +     +  +      +++    +P G L+++  +++G  L+   +  F  
Sbjct: 61  TLTEAGIAYYERCRVITEQANAANQQIENIKSEPQGLLKVSCPVNVGMQLIVPAINTFKR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I+I L L +  +DI  +  D AIR    +  S+L   KL T+      +  Y    
Sbjct: 121 QYPKIEIDLQLTDDVVDIIKNGFDIAIR-GVALSDSNLQATKLTTMSTCICGSSDYFNYY 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +P +  EL  H  + +  L  K +     L    +         L  N+  +   +   
Sbjct: 180 GKPKTPAELKAHKWVVY-QLGSKTLT----LQKGGKKHDITMQGGLSTNNAAARTAFVEA 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G G+  +P Y          L  I++D  T    +Y  +P     + KL+ F +++  
Sbjct: 235 GHGLGRIPLYDAWPKVQAGLLEIILDDYKTKDIELYGVFPPGATGSKKLRLFIDYLKA 292


>gi|148555721|ref|YP_001263303.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148500911|gb|ABQ69165.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 305

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 137/294 (46%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   +F  VA  GSF+ AA+ L LS++++S+ +S LE  +   LF+R +R L+LTE G
Sbjct: 6   DFEAWAIFAKVAELGSFSAAADDLALSKATVSKAVSRLEQRLAAPLFHRSSRKLSLTESG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +  + E  +  + E    P G +R+A  +  G   L+  L  F   YP++ 
Sbjct: 66  QMAQERAALLLAEGEAIEEAISERGAVPRGLVRLAAPMSFGIAHLRPILPLFHQAYPEVV 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L ++ +D+     D A+R+ + ++ S+L  R+L  + +    AP        P   
Sbjct: 126 IDLHLSDERVDLIEQGFDVALRIGQ-LEDSALKARRLFPVRLPLVGAPALFDRLGRPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L ++    F     +    +++    +  +       ++ N+   ++   + G+GIA 
Sbjct: 185 RDLVRYP--AFAYTHVRHPGRWHFRHPAEGELSVEIKGPIRANNGDVLIDALLAGTGIAT 242

Query: 244 LPDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            PD++V     + +L  ++ D  + PS  ++   P       ++K   +F+   
Sbjct: 243 APDFLVWRALADGSLEEVLSDWTSGPSIALHLVTPPTPLRPARVKVLIDFLAAA 296


>gi|89902383|ref|YP_524854.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347120|gb|ABD71323.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 291

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 129/294 (43%), Gaps = 12/294 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +GSF+ AA QL L+ S++SRQ++ LE  + ++L  R  R L LTE GS   
Sbjct: 1   MVVFARVVDAGSFSGAARQLGLTPSAVSRQVARLEGVLRVRLLERTTRKLRLTEAGSAAF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +              S  P G +R++     G+ ++   +  FL  YP++ +QLI
Sbjct: 61  TRCQALVAAAREVMALSDSQSATPRGLVRVSMPKAFGRQVVHPLMPAFLARYPEVDVQLI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D AIR+   +    L  R L +I     A+  YL     P   ++L 
Sbjct: 121 ITDRTVDLFEESIDLAIRITD-VPPPGLAGRPLTSIRHLVCASSQYLAAHGTPAHPRDLV 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
           +H+ +  G+       D +W           R+S   V N     +       GIA LP+
Sbjct: 180 QHSCLYLGE----DERDRHWRFQRGAEEATVRVSGRYVANHSEVRLDGARQHLGIASLPE 235

Query: 247 YIVKDNP---NLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  ++     +LV +++D    +    T +  YP       KL+ + +F+    
Sbjct: 236 FTAREALAKADLVTVLDDWEHKTDYAGTAWLLYPPNRFLAVKLRVWIDFLVAAL 289


>gi|317049776|ref|YP_004117424.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951393|gb|ADU70868.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 305

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 130/301 (43%), Gaps = 11/301 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  V   GSFT AA QLHLS SSIS+ ++ LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKGMSIFAKVVELGSFTAAARQLHLSVSSISQIVAKLEDELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +      +L   +  P G LRI ++  + QN+L     + L  YP + +
Sbjct: 64  IYYQGCRRMLAEAMQVHEQLYAFNNTPIGILRIGSSSTMAQNVLADMTSDMLREYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  +  D  IR+ + +Q S+L  R+L  + M   AA  +L     P    
Sbjct: 124 NLVTGIPAPDLIANGLDLVIRVGE-LQDSNLFSRRLGAMPMVVCAAKSFLAQHGTPEKPG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E+D  + + +        E       V R   + R      N  L+++++   G GIA +
Sbjct: 183 EIDNFSWLEYSVRPDNTFELIAPEGLVTRLTPQGR---FVTNDSLTLIRWLKAGCGIAYV 239

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----ARDW 297
           P   V +  N   I        +    VY  Y E  K   K++   +++       AR +
Sbjct: 240 PLMWVINEINTGEIDILFTQYQSAPRPVYALYTEKDKLPLKVQVCIDYLTEYFKRVARQY 299

Query: 298 K 298
           +
Sbjct: 300 Q 300


>gi|168462864|ref|ZP_02696795.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168819484|ref|ZP_02831484.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|195634382|gb|EDX52734.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|205343906|gb|EDZ30670.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320085828|emb|CBY95604.1| probable RuBisCO transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 301

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVSRPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++  +    +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNH-SYDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|84390428|ref|ZP_00991439.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84376688|gb|EAP93564.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 310

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G  +
Sbjct: 12  DLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEKALSVKLFERTTRTLIITQAGQLV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G + +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 72  YDQSVVMINAAQQAVELSTSDHTEPAGSITVAAPEAFLNSVLQPFVVPFLNQYPEIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DIDI     D A RL       SL+ ++L   ++   A+P YL     P    EL
Sbjct: 132 RAADGDIDILRQGIDIAFRLTDK-PDESLVLKELGKTNLVLCASPDYLDAKGIPHHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +   +     + DF      D     P      VN     ++    G G+ +  D
Sbjct: 191 SEHDCLYLAETDKDHIWDF---LKDDEFYTVPVSGRYAVNHSQMRLKGVKEGLGVGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++++D     ++V+++ED    S     +   + +      +L+ F ++      D
Sbjct: 248 FVIQDALAEGSVVQVLEDWTIKSNYHGAIAMQFAQTKYMPARLRVFIDYAMEHLGD 303


>gi|254509523|ref|ZP_05121590.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221533234|gb|EEE36222.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 303

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D LR+F   A   + + A   L ++ +  S +++ LE  +  +L +R  R ++L+
Sbjct: 1   MGLDTDALRLFVRAADMLNISAAGRALGMAPAVSSTKLAKLEQSLDSELLHRTTRKVSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+       E+  + E     L + +    G LR A      Q  +   + +FL  Y 
Sbjct: 61  VEGADFLPFAREIIAQEEAALAALGKQATTIKGTLRFAAPSSFAQLYIAPIIPKFLKQYH 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L L +   D+     D A+R   P+  +SL  RKL        AAPHYL     P
Sbjct: 121 NLTLDLRLSDVQFDLIEGSYDLALR-NAPLVDTSLKGRKLADDRRILCAAPHYLDTYGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H+LI F +  P+ +        V  P        L ++   S ++  + G+G
Sbjct: 180 ETPADLANHHLIAFQNRQPRPLTGPAGEKAVFDPASAK--GQLIIDDGQSQVRATLAGAG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRNFIFLK 293
           I+L   + V D+     L R++ +       V +  YP++   + K++ F +F+  +
Sbjct: 238 ISLNALWSVHDHLKSGRLTRVLPNFEASEDNVLWLIYPKSNVLSPKVRVFIDFLITE 294


>gi|187921078|ref|YP_001890110.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719516|gb|ACD20739.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 304

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  +G+F  AA  + +S   +SR I+ LE  + I+LF R  R ++LTE+G + +
Sbjct: 12  ISVFAAVVDAGTFAAAAALMDMSPPGVSRAIARLEKRLKIRLFNRTTRAVSLTEEGRQFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    +E              GKLRI         LL   L  F+  +P+I+++ I
Sbjct: 72  EQVMPHLRGMEEAAAAAAGGGAIVRGKLRINLDPVFSHILLGAKLDAFMDAHPEIELEFI 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D+ +D  D A+R  +P +SSSLI RKL+   +   A+P Y+ +   P   QEL 
Sbjct: 132 ARDQLGDLIVDGFDLALRFGEP-RSSSLIARKLLDATIVTVASPLYIASRGRPTEPQELG 190

Query: 188 K--HNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +  H  + F +  P+  + ++W     R  +       L VN   +++  C+ GSG+A +
Sbjct: 191 RGIHRCLEFRN--PETGKPYHWEFHRKRKKLIVETNGRLTVNDPGALLNACLAGSGVAQM 248

Query: 245 ----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                +++++    LV +  D     F +Y  +P       + +AF +FI  
Sbjct: 249 LLLGAEHLIRQ-GRLVNLFPDWADERFPLYAYHPSRHHVPARTRAFLDFIIA 299


>gi|89093266|ref|ZP_01166216.1| Transcriptional regulator [Oceanospirillum sp. MED92]
 gi|89082562|gb|EAR61784.1| Transcriptional regulator [Oceanospirillum sp. MED92]
          Length = 300

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 138/301 (45%), Gaps = 13/301 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           +  D    L+ F  VA + SFT AAE L +S+  +SR +  +E+ +G +L +R  R +TL
Sbjct: 4   IQMDRLLALKSFVEVACTSSFTQAAENLKVSRLQVSRHVKEVESWLGQRLLHRTTRKVTL 63

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE GS+       +  +    +   Q      +G +RIAT I L QNLL   ++ F+  +
Sbjct: 64  TEAGSEALVYCERILDEAAAMESLAQIRQNTLAGSIRIATPIGLSQNLLIEAVQGFITEH 123

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I+I+++  +    +  +  D A+R        +LI R+L+TI     A+P YL+    
Sbjct: 124 PNIKIEILASDSFAQLVDERIDIALRYTAQPAD-NLIARELMTIDSVICASPAYLEKNSA 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P + ++L +H  +         +   +W           +++  +  N   +++     G
Sbjct: 183 PKAPEDLSQHQCLVH-------LNYDDWEFDDGEENRSIKVNGQISANELGTLVNAACAG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+  +P  +      +  LVR++ +   P  +++  Y         ++ F +++  + +
Sbjct: 236 QGLIRIPCDLANPLISDGKLVRVLSNYNLPENSLWAVYMSRSYQLPAVRQFIDYLLTQWQ 295

Query: 296 D 296
           D
Sbjct: 296 D 296


>gi|330810625|ref|YP_004355087.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378733|gb|AEA70083.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 299

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 126/294 (42%), Gaps = 8/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L +F ++   G  + A  ++ LS +S+S +++ LET  G  L  R  R ++LT++G 
Sbjct: 3   LKNLELFLLIVEKGGLSAAGREVGLSPASVSERLATLETYYGATLLNRTTRAISLTDEGK 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +  +       ++  +   SG +R++   DLG+  +   L  FL  +PD+ +
Sbjct: 63  LLVEGARRLLAEAGELHSSIRAGTQTLSGPIRMSAPQDLGRQYIDPILSRFLDEHPDVSL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D+     D AIR    +  SSL  R L        AAP YL     P    
Sbjct: 123 DLDLGDGYVDLVSQGLDFAIRYGA-LADSSLRARPLGENRRVVCAAPTYLARHGTPTHPT 181

Query: 185 ELDKHNLITFGDLIPKCMED-FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  +     I    E  F+    V R + + R      N    + Q+C+ G GI+L
Sbjct: 182 ELTRHECLVMRLGINTAREWTFSRRGEVHRVLVQGRRIA---NDGGLVRQWCLEGHGISL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + V+D+     LV ++ +    S  +   YP A     +++A    +  + 
Sbjct: 239 KSIWDVRDDLKSGRLVELLPEFTAGSTLLQIVYPTARVQPKRVRALIEHLVTEL 292


>gi|270304149|gb|ACZ71241.1| alginate lyase [Vibrio sp. AL14]
          Length = 293

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 15/296 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  +G F+ AAE L +  + +SR +S +E+++G+ +F R  R + LTE+G +
Sbjct: 6   DDLEMVLTVVDAGGFSAAAEALDVQVAKVSRSVSKVESQLGVSIFNRTTRRVELTEEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      +++ + E+      P G+LR+        + L   ++ F   YPDI+++
Sbjct: 66  FVDSVRLGLQVIQSAEEEIVSRGELPKGRLRVDAASPFVFHQLVPLVQSFKEAYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    +H  A+P YL     P   ++
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LSDSTLHARPLGKSLLHIVASPDYLAKRGLPTKPED 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H ++ F                   P        +  ++   + Q  + G+GIA L 
Sbjct: 185 LSSHQVVGFAGNKVLNHWPL--------PNQSYIPPTVTASNGEIVRQLALAGNGIACLS 236

Query: 246 DYIVKDN---PNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++V+D+     LV I+E      T    V   Y ++   + ++ AF +FI  + +
Sbjct: 237 GFMVQDDIAAGRLVPILEQDKLANTDRERVNAVYYKSSSVSKRISAFIDFIQPRLK 292


>gi|34497228|ref|NP_901443.1| gstR-like transcriptional regulator protein [Chromobacterium
           violaceum ATCC 12472]
 gi|34103084|gb|AAQ59447.1| gstR-like transcriptional regulator protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 299

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 126/297 (42%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + VF  VA    F  AA +L LS  +++R ++ LE  +G++L  R  R + +TE
Sbjct: 1   MDRFHWMSVFVAVAEEEGFAGAARRLKLSPPAVTRAVAALEENLGVRLLNRTTRYVRVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +   +E  +      + +P G +R+   +  G+  +     +FL  YP 
Sbjct: 61  AGARYLDDARRILAAVEEAEETAAGINAEPRGLIRLTAPMLFGRLYVMPAALDFLRQYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++ +L ++ +++  +  D A+R+   +  SSL   K+  +     A+P YL    EP 
Sbjct: 121 VEVEALLQDRVVNLMEEGLDAAVRIGH-LPDSSLRAIKVGEVRRVTCASPDYLARHGEPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L  H +I              W               L V+S    +     G G+
Sbjct: 180 TPEALGGHAVIA----STAASSTLEWKFGPGGGHRLRVRPRLAVSSNDVAIDAACGGFGV 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y V +      L R++    +    ++  + E+   + +++ F +F+  + R
Sbjct: 236 TRVMSYQVAEALAAGKLKRVLVPYESEPLPIHIVHAESRHGSTRMRRFIDFLAERLR 292


>gi|77465387|ref|YP_354890.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126463790|ref|YP_001044903.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|77389805|gb|ABA80989.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
 gi|126105601|gb|ABN78131.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 315

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 131/293 (44%), Gaps = 6/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F ++AR  SF+  A+ L LS S++SR+++ LE  +G++L  R  R ++LT +G   
Sbjct: 5   DLSFFVMLARRESFSATAQDLGLSASAVSRRLARLEDRLGVRLLNRTTRKVSLTSEGEAY 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  ++   +  L +   +P+G LRI  T+  G+  L   +  F  ++P +++QL
Sbjct: 65  YGAALRLLDEIADLEHNLSQGRDRPAGLLRINATLGFGRTHLAPAIARFRRIHPAVEVQL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  +++  +  D  IR   P     ++ R L        AAP YL+    P S+ +L
Sbjct: 125 LLTDAPLNLVEEGIDLGIRFGAP-PFGRMVMRLLQRNRRFLCAAPSYLEARGVPQSLTDL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ I          + + +    +          L  N     + + + G GI L  +
Sbjct: 184 QQHSCIVLRQD-HDAYDVWRFDDIGEASPSAKVSGELSTNDGEIALAWVLDGQGIMLRSE 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + +  +     L  ++      +  ++  YPE    + K++ F + +    RD
Sbjct: 243 WDIAQHVREGRLRLLLPHYRQ-TANIHAIYPERHNLSAKVRVFADHLAAHVRD 294


>gi|84386233|ref|ZP_00989262.1| putative transcriptional regulator, LysR family [Vibrio splendidus
           12B01]
 gi|84379003|gb|EAP95857.1| putative transcriptional regulator, LysR family [Vibrio splendidus
           12B01]
          Length = 309

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 126/303 (41%), Gaps = 17/303 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L LS ++++ ++  LE   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMAMFVSIVKHHGLAAAGRELGLSPATMTARLQALEERYGVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+   +   +  +Q    +  G L+IA   D+G+  +   L EF   YPD
Sbjct: 61  SGELYHKACLEILDNVSEAENLIQNGVKEVKGSLKIAAPKDIGKQYILPILSEFCQQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +I+    D  +R  + +  SSLI R+L        A+P YL     PL
Sbjct: 121 VIPYLYLNDNLSNIAESGMDIVVRYGE-LVDSSLISRRLSPSRRVLCASPEYLAKHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + Q+L +H+ +    ++    E   W     D       +     +    I  + + G G
Sbjct: 180 TPQDLVEHDCLA---MLRSNEELKTWHFQDNDMKKSVTVVPKRFSDDGEVIRYWALKGEG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+D+     LV ++   +          S  +   Y        +++ F ++
Sbjct: 237 IALKSVLDVQDDINNQRLVTLLNGYMKNFNTAMSVSSADLNVVYISKKYQPKRIRLFLDY 296

Query: 290 IFL 292
           +  
Sbjct: 297 LLE 299


>gi|126668059|ref|ZP_01739022.1| transcriptional regulator, LysR family protein [Marinobacter sp.
           ELB17]
 gi|126627450|gb|EAZ98084.1| transcriptional regulator, LysR family protein [Marinobacter sp.
           ELB17]
          Length = 302

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 140/298 (46%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D   ++ F  VAR  + ++AA +L L+ S++SR+++ LE  +G++L  R  R L+LT
Sbjct: 1   MSSD-SDMQFFACVARRLNLSNAALELGLTASAVSRRLTRLENRLGVRLLNRTTRRLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G      + ++  +++ T+  L  +S +P G LRI  T   G+  +   +  F    P
Sbjct: 60  SDGEVFLLASHDIIGRIKETEQSLSRASAEPQGLLRINATFQFGREYIAPAISRFARTNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q+QL L +   ++  +  D  IR   P  SS LI  +L+       AAP YL+    P
Sbjct: 120 EVQVQLELSDAPANMVEEGYDLNIRFGMP-SSSRLIVTRLLPNQRVLVAAPSYLRKHGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H  I    ++ +  E ++ +   D          L  N     + + + G G
Sbjct: 179 TRLEDLTQHQCI----ILRQEREAYD-IWRFDDGEHVRATGQLSTNDGEIAVSWVLEGHG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I L  ++ +  +     L  ++ +  T    +Y  YPE L  + K++ F + +    +
Sbjct: 234 IMLRSEWDIARHVRTGRLQVVLPE-KTHEAGIYAVYPERLNLSAKVRLFIDLLRETLQ 290


>gi|296115314|ref|ZP_06833953.1| transcriptional regulator protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978137|gb|EFG84876.1| transcriptional regulator protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 298

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/283 (26%), Positives = 126/283 (44%), Gaps = 6/283 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F VVA  GSFT AA +L  SQS++S  +  LE  +G++L  R  R + LT+ G
Sbjct: 5   DLTDLNSFLVVAEEGSFTRAAIRLETSQSAVSNTVRRLEERLGVRLITRTTRKVVLTKAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       +  +++    +     +P+G +RI+T+     +++    K  +  YPDIQ
Sbjct: 65  ERLLNSVGPAFSFVDSELTAIANLRDRPAGLVRISTSEFAAHSIVWPAAKRLMTTYPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    DI     D  +RL + I    +  R    + M A A+P YL+   EP S 
Sbjct: 125 VEISIDATLTDIVDQRFDAGVRLGELIAQDMISVRIGPDVRMVAVASPTYLEGRTEPNSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  I      P     + W    D    + ++      NS    ++  + G GIA
Sbjct: 185 HDLAEHICIAV--RAPTRGSIYAWEFEKDGDELKIKVQGQFTSNSGSLAIKAAIAGLGIA 242

Query: 243 LLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGK 282
            +PD+  +      ++   +ED   P    +  YP    ++  
Sbjct: 243 FVPDFHAEAAIKAKQVKILLEDWCQPFPGFHLYYPNRRHHSPA 285


>gi|145298600|ref|YP_001141441.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851372|gb|ABO89693.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 322

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 121/289 (41%), Gaps = 5/289 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +L  F  VA   SF  AA +L+L+ S++S  +  LE  +G++L  R  R ++ T+ G
Sbjct: 9   EFGELTAFVAVAEEKSFRKAAARLNLTASTLSHALRALEERLGVRLLNRTTRTVSPTQAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +  ++ +     ++      P G++RI T       +    L++F   YPD+Q
Sbjct: 69  LALLAEIAPAFNVIAHAVKKVNAFRESPQGRVRINTPRIAADMIFLPQLQKFCHQYPDVQ 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI     D  +R+R  +Q      R     H   Y +P Y +    PL+ 
Sbjct: 129 LELATNDGFVDIISQGFDAGVRIRSDVQQDMSAVRLTADFHSAVYGSPAYFERHAIPLTP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I   ++    +  +       R I  P    + V++   + +  + G G+  
Sbjct: 189 ADLQHHLCIGRREITGGSLYRWE-FEKDGRQIAVPVSGPVTVDNVSMMTRLALDGIGLVY 247

Query: 244 LPDYIVKDN----PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
                  D+      L+R++ D        +  YP   +    LKA  +
Sbjct: 248 TAQSPEHDDLVTTGRLIRVLADGSITYPGFFLYYPGHRQLPAALKAVID 296


>gi|84386806|ref|ZP_00989831.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01]
 gi|84378334|gb|EAP95192.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01]
          Length = 304

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 136/299 (45%), Gaps = 16/299 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +  SGS T AA++L LS+S +S  + GLE  +G+KL  R  R  +LT+ G + +
Sbjct: 1   MQVFAQIVESGSITKAADKLDLSKSVVSHHLQGLEQHLGVKLLTRTTRRQSLTDAGQRFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   +   + E++ES    +G + I +   L  +L+   + EF+  +P I+ QL+
Sbjct: 61  QRCLEMRKLMSLAEEEVRESCSDFAGTITITSPHTLMTHLIGPAMCEFMKSHPRIEPQLL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL--KNCREPLSIQE 185
            ++  +D+   Y D ++ +   +  S+    KL  +H      P YL      +P+   +
Sbjct: 121 ANDMRVDLIEKYIDLSVTVGA-LPDSTSRAIKLGELHQVLCCHPDYLTKAQIPQPIMPSD 179

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVLGSGI 241
           L +++ I          E  N   + +   G+      +     +S  +I    + G GI
Sbjct: 180 LSQYDYIA------NQWEGINSQRSFEINKGKVSTYQFRASRIGDSVPTIRMMALNGLGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A LP   ++++     LV I+        + Y  +   L+   +++AF   +   A  +
Sbjct: 234 ACLPKQAIEEDLKKGTLVNILPKDQVLKTSFYVVHNYGLQVPARIRAFIEHLKQHAESY 292


>gi|209517842|ref|ZP_03266676.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501675|gb|EEA01697.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 309

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 9/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA + SF  AA QL ++ S I+ +I  LE  V   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVAETSSFAEAARQLGVTSSVITTRIQQLEKFVNAPLFHRSTRHVRLSEVGEAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +EV  ++     +++E    P+G+LRI              L EF   YP IQ+ +I
Sbjct: 67  RECAEVVGRVNELTDQMRELRATPTGRLRIQMLPGFALGHFGAPLAEFNRRYPGIQLDVI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D   +  D A ++  PI + SLI+R+L  +     A P Y+K    P   ++L 
Sbjct: 127 VNDRVVDPIEEGFDVAFQIFPPI-AESLIERRLFKVRRLFCATPAYVKEHGAPQHPRDLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
           +H    +     +      W  T    + E  +  + + NS   +  Y + G G+  LP 
Sbjct: 186 QHTTALYSGYPSRN----RWTMTHGDEVVEMELPGMIRSNSVHLLRDYALTGGGVVCLPT 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +      + +LV I+ D    +      YP   +   K+KA   F+  
Sbjct: 242 LVASAALLDGSLVPILTDYTLSTLNFAAVYPATQRQALKVKALVEFLAE 290


>gi|146342446|ref|YP_001207494.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146195252|emb|CAL79277.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 305

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 132/293 (45%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L V   VA SGS + AA  L +S + +++ ++ LET +G KLF+R  R LT+TE G 
Sbjct: 5   LTGLEVLSKVAGSGSLSGAARLLGMSPTMVTKHLAALETRLGTKLFHRTTRRLTITEAGR 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +   +   V    E  +  +    V+P G LR+   +  G   +   L  F  LYP + +
Sbjct: 65  RYLDLAERVLGDFEAAESAIAADRVEPRGVLRLNVPLAFGTRQIAPLLAGFAALYPGVSV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L+++ +D+  +  D AIR+   ++ S+L+ R+L    M   AAP YL     P +  
Sbjct: 125 ELGLNDRLVDLIEEGWDLAIRIG-TLKDSTLVARRLAPCRMMICAAPSYLTTHGTPRTTT 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +            W       I       L+ N+  +++   + G G+   
Sbjct: 184 DLAAHNCLGY---TLAAAGPSRWRMGGKAAIDVTVSGNLRANNGDALLAAALAGQGLIYQ 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P +IV D      LV +  DV       V+  Y      + K++AF +++   
Sbjct: 241 PTFIVGDELRTGRLVPVTLDVPPSDLLAVHAVYLPDRTPSAKVRAFIDYLAAA 293


>gi|83955224|ref|ZP_00963879.1| hypothetical protein NAS141_16279 [Sulfitobacter sp. NAS-14.1]
 gi|83840217|gb|EAP79391.1| hypothetical protein NAS141_16279 [Sulfitobacter sp. NAS-14.1]
          Length = 301

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 7/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LR+F + A   + + A   L L+ +  S +++ LE E+G++L  R  R ++L+ +
Sbjct: 1   MDTDNLRLFVMAADRLNISAAGRNLGLAPAVASARLAKLEQELGVELLRRTTRKVSLSLE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS       E+  + E  +  L      P G +R A      Q  +   L +F   +PD+
Sbjct: 61  GSDFLPYAREILAQAEAAKAVLGSHETSPKGTIRFAAPSSFAQRHIMPLLPQFHAAFPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L +   D      D A+R   P+  SSL  RKL        A+P YL+    P S
Sbjct: 121 TLELRLSDARFDAIEGSFDLALR-AAPLTDSSLKGRKLADDTRVLCASPAYLEEHGVPQS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H  + + DL P+ +           P     I    V+   +  +  + G+G++
Sbjct: 180 PAELRGHRFLAWVDLEPRDLIGPEGETAPLDPAQ--MICRTIVDDGDAQREATLAGAGLS 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRNFIFL 292
           +   + V D   +  L+R++ +      +V +  YP +   T K +   +F+  
Sbjct: 238 INSLWSVSDELRSGRLIRVLPEWKLNDSSVLWLMYPRSNVLTPKTRILIDFLIA 291


>gi|332561045|ref|ZP_08415363.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332274843|gb|EGJ20159.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 315

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 131/293 (44%), Gaps = 6/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F ++AR  SF+  A+ L LS S++SR+++ LE  +G++L  R  R ++LT +G   
Sbjct: 5   DLSFFVMLARRESFSATAQDLGLSASAVSRRLARLEDRLGVRLLNRTTRKVSLTSEGEAY 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  ++   +  L +   +P+G LRI  T+  G+  L   +  F  ++P +++QL
Sbjct: 65  YGAALRLLDEIADLEHNLSQGRDRPAGLLRINATLGFGRTHLAPAIARFRRIHPAVEVQL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  +++  +  D  IR   P     ++ R L        AAP YL+    P S+ +L
Sbjct: 125 LLTDAPLNLVEEGIDLGIRFGAP-PFGRMVMRLLQRNRRFLCAAPSYLEARGVPQSLTDL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ I          + + +    +          L  N     + + + G GI L  +
Sbjct: 184 QQHSCIVLRQD-HDAYDVWRFDDIGEASPSAKVSGELSTNDGEIALAWVLDGQGIMLRSE 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + +  +     L  ++      +  ++  YPE    + K++ F + +    RD
Sbjct: 243 WDIAQHVREGRLRLLLPHYRQ-TANIHALYPERHNLSAKVRVFADHLAAHVRD 294


>gi|312882549|ref|ZP_07742290.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369949|gb|EFP97460.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 312

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 129/292 (44%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  + +  SF+ AAE L++S S IS++++ LE  VG+KL  R  R  TLT+ G K 
Sbjct: 8   QMVVFSALVKCRSFSRAAESLNVSVSHISKKLAALEQSVGVKLIERSTRNFTLTQAGLKF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  +++   +E    E+     + SG  +IA T  +G   +  +L +F   YPDI+I++
Sbjct: 68  SKHCTDLVSNIEQGYAEINSLRDEVSGVFKIACTPHMGTKFVIPSLSDFKQQYPDIEIEV 127

Query: 127 -ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +  ++++D+     D  I +   I +   + ++       A A+P YL   + P    E
Sbjct: 128 YLTTDQNLDLLETGIDLWITISGSI-AEGYVAQRFADNTFLAVASPAYLMKNKAPSHPDE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  HN + +            W  + D      ++S    VN   ++    + G GI+ L
Sbjct: 187 LQDHNCLIY---QGWDTHYNVWSFSKDGQDLNIKVSGDYTVNMGYALRDASLAGWGISYL 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +  +      L++++ D         Y  YP       K K    ++  
Sbjct: 244 PSILFGNELKEGQLIQVLPDWRASYVMPFYGVYPSRRYLPQKTKIIIEYMKE 295


>gi|319764837|ref|YP_004128774.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330827042|ref|YP_004390345.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317119398|gb|ADV01887.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329312414|gb|AEB86829.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 296

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 131/298 (43%), Gaps = 12/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +L+VF  V   GSF+ A  +LHLS S+IS+ I+ +E  +G++LF R A  + LT+
Sbjct: 1   MDKFGELQVFLRVVEEGSFSGAGRRLHLSPSTISKLIARMEARLGVRLFERVAGAIRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +      +V   +E  +  ++ +  + SG +RI T +   + L+   L   L  +P 
Sbjct: 61  EGERFRAAGEQVVQAMEEAEAGVRVADAEVSGTVRIHTALTTAKYLVAPRLPRLLDRHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +  +L  +  D      D AI   +P +  +LI R L+       AAP YL     P 
Sbjct: 121 LHLDFVLGTERGDFIRQGLDVAIHSGRPTE-QTLIGRPLMARPWVIAAAPQYLARHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             ++L +H  + F        +   W    +  +    I   +  N    +  + +LG G
Sbjct: 180 RPEDLLRHRCLNFTIRT----QWNRWTFHDEGGLKTIDIPNYIGANQGELLRTFALLGLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLK 293
           +  L  + +    ++  LV ++      +     Y  YP       +++A  +F+  +
Sbjct: 236 VVRLARFHIAGDLESGELVPLLTQYQERTEDDRFYLLYPRGRSLAPRVRAVVDFLAQE 293


>gi|59712297|ref|YP_205073.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59480398|gb|AAW86185.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 291

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 141/291 (48%), Gaps = 9/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  V  +GS+T A+ +  +  ++I+R+I  LE  + I+L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRQVVENGSYTAASRKTLIPVATITRRIQALEDSLDIRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K +   + +   L  T   L E     +GKL+IA   +L + ++Q  L +F+LLYPDI
Sbjct: 61  GQKFYDECAPILATLVNTSEYLGEECRGAAGKLKIAAPSNLTKRMIQPILNKFMLLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L + N+   +     D   R+ K  + SSLI R++ ++     A+P YL+   EP  
Sbjct: 121 SINLTMSNQPEQLDPTDWDIIFRVGKQ-RDSSLIARQIGSLEDILVASPSYLEKNSEPTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QEL KH+L+    L+   + + +        +        + +    I   C  G GI 
Sbjct: 180 AQELHKHSLLKGNPLMRWRLTNKD-----GESVTITDAGRFEASELNVIRMACSNGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L+PD ++    +  +L+R++ D       +Y  Y        K++ F +F+
Sbjct: 235 LMPDIMISQYLEEGSLIRVLSDWSANPRDIYMIYNYKDHQPEKVRLFIDFV 285


>gi|262279111|ref|ZP_06056896.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259462|gb|EEY78195.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 308

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 120/301 (39%), Gaps = 10/301 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +L  F      GSF+ AA    L+ S+IS+ I+ LE  +G++L  R AR LTLTE+G
Sbjct: 10  NYRQLMAFIWAYEHGSFSAAARANDLTPSAISKLINRLENRLGVRLIQRGARQLTLTEEG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +    V   +       +    + SG L+I T     Q+ +   L EFL  YP + 
Sbjct: 70  VAYLKSARNVVAAMNEADSLAEAFPTRVSGVLKIRTMPTFAQHQILPWLPEFLDNYPSLS 129

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +   L+    D      D AI     + SSS I  ++        A+P YL+    P   
Sbjct: 130 VDFELNAVYQDDFDRGVDIAI-YGGILPSSSRIATRIGDSEWITCASPQYLEKYGTPKHP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL +H    F         DF      +     P       +    +    + G GI  
Sbjct: 189 QELLQHRCFHFNFSSSWNNWDF---VENNESFIVPVKPIASFSQGTFLRDLALRGEGIVR 245

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFLKARD--W 297
           L DY + ++  L R+   +      +    Y  Y      + ++K F  F+  K ++  W
Sbjct: 246 LADYHIGEDIKLGRLTPILGNFRSGITEPQYIIYANRKLQSPRIKCFIQFLQQKTKNKPW 305

Query: 298 K 298
           +
Sbjct: 306 R 306


>gi|237730847|ref|ZP_04561328.1| transcriptional activator [Citrobacter sp. 30_2]
 gi|226906386|gb|EEH92304.1| transcriptional activator [Citrobacter sp. 30_2]
          Length = 303

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 5   DLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEETLGVRLIQRTTRQFNVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  +    V+P G +++   + L    +   L  F+  YPD+ 
Sbjct: 65  QTFYEHCKAMLVEAQAAQDAIAALQVEPRGVVKLTCPVTLLHVHIGPMLARFMARYPDVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R +P + S L+ R L       YA+P  ++      S
Sbjct: 125 VQLEATNRRVDVVGEGLDVAIRVRPRPFEDSDLVMRVLADRGHRLYASPQLIEQMGTLHS 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +   ++      K +  +                 +     L++ +  V G G+ 
Sbjct: 185 PAELTRWPGLSLA--TGKHVHRWELFGPQGARAEVHFTPRMITTDMLALREAAVAGVGVV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +VKD      LV +++        ++  +P        ++   +F+  +
Sbjct: 243 QLPQLMVKDQVAAGELVALLDGWEPKREIIHAVFPSRRGLLPSVRTLVDFLTEE 296


>gi|330879634|gb|EGH13783.1| transcriptional regulator, lysr family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 301

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 124/295 (42%), Gaps = 10/295 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF+ AA  L +S S++S  + GLE+ + ++LF R  R + LTE G +L
Sbjct: 8   ELTAFVAIAEQRSFSGAARMLGVSPSALSHSMRGLESRLELRLFNRTTRSVALTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +   LE    ++      PSG +R++ +    + L++  +  FL   P I I+ 
Sbjct: 68  FRRVQPLLGDLECAVNDVTSERNTPSGLIRLSASESSFKLLIRHVMPRFLKDNPQIHIEC 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQE 185
           + D++ +DI  D  D  IRL   +    +  R    I   A A+P YL     P+ +  +
Sbjct: 128 VADSRLVDIVADGFDAGIRLFDDVPRDMIAVRFGPDIRFAAVASPEYLSRHPAPVTTPHD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I F             L    R         + +++   + +  + G GIA LP
Sbjct: 188 LKAHRCIRFRFASGTLFRWD--LDHQGRSASIDVDGPMTMDNINLMAEAALAGIGIAWLP 245

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           ++ V ++     LV ++ D           YP        L+ F        RDW
Sbjct: 246 EHQVAEHLQAGRLVHLLPDWGPRYTGACLYYPANRHPPMALRMF----AEALRDW 296


>gi|304396464|ref|ZP_07378345.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304355973|gb|EFM20339.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 305

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 136/302 (45%), Gaps = 12/302 (3%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M  D  WD L    V+A  GSFT AAE+L +S++++S++I  LE   G+ L  R  R + 
Sbjct: 4   MKTDALWDHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKELEEMAGVLLVQRTTRSVR 63

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT  G KL     E + ++E +   +++++    G +R+   +   +  L   + EFL  
Sbjct: 64  LTSAGEKLVEELREPFSRIEQSFFSVRDTAGPVRGLVRMTAPVAFARQQLVPIIGEFLRD 123

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP +++QL + ++ + +S +  D AIR    +  +  +   L        A+P YL    
Sbjct: 124 YPQVRLQLDVTDRIVSLSSEGFDLAIRHSDTLPETH-VALPLCDTRTLLVASPAYLSLQG 182

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVL 237
            P S Q+L +HN + +   I      F    T D    + RI      N+  SI    + 
Sbjct: 183 VPQSPQDLKQHNCLYYPRGIESPRWRFE--TTTDSEQVQVRIQGSFATNNSESIRDAALQ 240

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIF 291
           G GIA+LPD+  ++      L +++            ++   P A +    +  F  ++ 
Sbjct: 241 GLGIAMLPDFSAREALAAGTLRQVLPAWQPVEAFAARLWIVRPWAAQVPRAVTTFTQWLR 300

Query: 292 LK 293
            +
Sbjct: 301 AR 302


>gi|152971827|ref|YP_001336936.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956676|gb|ABR78706.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 308

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 16/301 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGNISAAARKLEITPPSVSNALRLLEEHIGHPLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+     LE +   +++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTAAAVETLEKSLEIIRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           ++ + +  ++I  +  D  IR    ++   ++ R L+       YA+  YL     P   
Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILE-GGVVARPLMKPFREGLYASSAYLAEYGVPAMP 184

Query: 184 QELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +L  H LI +       ++P  + D     TV+ P        L  N    +      G
Sbjct: 185 ADLHHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI  L + I++   D    + +MED       VY  YP+    T ++KA  +F+ + A 
Sbjct: 239 LGIGRLFEPILQLQPDREQFIPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFLIMYAA 298

Query: 296 D 296
           D
Sbjct: 299 D 299


>gi|115358758|ref|YP_775896.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284046|gb|ABI89562.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 311

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 128/300 (42%), Gaps = 7/300 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ +R+F  V   GSFT A+ QL +  S +SR++  LE ++G++L YR  R +++TE 
Sbjct: 12  MDFESIRIFLRVVERGSFTAASVQLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEG 71

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     + +     P G LR+     +G   L+  L EF   YP +
Sbjct: 72  GRDYYERCLRAEEILLDADRQARALRTDPEGTLRVLVPYSIGLFELEPALAEFHRRYPRV 131

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  S  + R L   H    A+P YL+    P +
Sbjct: 132 QLVLIYDNSPLDLVEHGFDVALRAGM-LTDSGYVARSLGWSHAKLAASPAYLERVGRPRT 190

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +H+++  G   P                  P    L  N  +++++    G GIA
Sbjct: 191 PHELAQHDILYVGRDAPGLT--LRLTNAAGDVADVPIRPVLISNESITVLRQAASGGGIA 248

Query: 243 LLPDYIVKDNP---NLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           L+  + +        L  ++ D   T    ++  YP       K++ F  F+      W+
Sbjct: 249 LISTHYIARRLEKNELEIVLPDWHRTDDVELHALYPRRATLDSKVRIFVEFLTEVFTGWR 308


>gi|261819624|ref|YP_003257730.1| DNA-binding transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261603637|gb|ACX86123.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 314

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 123/291 (42%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   GSFT AA QL +S S++S+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKSMSVFARVVECGSFTAAARQLQMSVSAVSQTVSKLENELQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     + H+      +L   +  P G LRI ++  + Q++L     + L  YP + +
Sbjct: 64  IYYHGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQHVLSTMTAKMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  +  D  IR+  P+Q S L   +L ++ M   AA  YL     P    
Sbjct: 124 NLVAGIPAPDLIANGLDIVIRVG-PLQDSGLFSTRLGSMPMVVCAAKSYLAQHGTPEKPT 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +   +     +F  +A                N   +++++   G+GIA +
Sbjct: 183 DMGNFSWLEYSVRLDS---EFELIAPEGISTRITPQGRFVTNDPQTLVRWLKTGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +IV +     +  +     +    VY  Y        K++   N++  
Sbjct: 240 PLMWIVDEINRGEIEILFNRYHSDPRPVYALYTRKDNLPLKVQVCINYMTE 290


>gi|188532448|ref|YP_001906245.1| putative DNA-binding transcriptional regulator [Erwinia
           tasmaniensis Et1/99]
 gi|188027490|emb|CAO95337.1| Putative temperature-dependent LysR-family regulator A [Erwinia
           tasmaniensis Et1/99]
          Length = 305

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   GSFT AA+Q+ LS S++S+ ++ LE E+ +KL  R  R L LTE G 
Sbjct: 4   LKGMSVFTKVVELGSFTAAAQQMQLSVSAVSQIVARLENELQVKLLNRSTRNLGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +  + +    +L   +  P G LRI ++  + QNLL    KE L  YP +++
Sbjct: 64  IYFQGCRRMMAEAQQVHEQLWAFNNTPVGTLRIGSSSTMSQNLLAPMAKEILQQYPGLKV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA HYL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDLVIRVGD-LQDSSLYSRRLGVMPMVVCAAKHYLVQFGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++  H+ + +     +   DF  ++     I          N   +++++   G+GIA +
Sbjct: 183 DIGNHSWLEYSV---RPDNDFELISPEGTAIRLSPQGRFATNDAQTLIRWLKAGTGIAYV 239

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   + D  N   +        +    VY  + +  +   +++   N++
Sbjct: 240 PLMWIIDEINAGEVEILFAHYQSVPRPVYALHSQKDRLPLRVQVCINYL 288


>gi|153001935|ref|YP_001367616.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151366553|gb|ABS09553.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 299

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/299 (28%), Positives = 136/299 (45%), Gaps = 13/299 (4%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M  +   D +R+F+VVA+ GSF  AA+ L +  S++SR+I+ LE  +G++L +R A  + 
Sbjct: 1   MKLNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVN 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT  G +       ++ +L     EL     +  GKLRI+  I+     L  +L  F   
Sbjct: 61  LTATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRH 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC- 177
           YP+I I L L N +ID+S +  D A R+ +P +    I R L TI     A+        
Sbjct: 121 YPNIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISFVLCASTS--ATHW 177

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
               +I+ L++H +I      P  +       T      EPR +  L V+      Q  V
Sbjct: 178 HALQAIEALEQHPVII---AKPVKIWRLQHNITGQDFEFEPRGNIKLAVDDMAIASQAVV 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G GI LLP  +  +   +  LV+I+ +      T Y  Y +      +++   +F+  
Sbjct: 235 AGLGIGLLPISMASEQIQSGKLVQILPEWQGIPRTAYLMYRDRDNLPLRVRLLIDFMLA 293


>gi|54309299|ref|YP_130319.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913735|emb|CAG20517.1| hypothetical transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 313

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 15/295 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L +F   A  G+ T AA QL +S ++ S  +  LE ++G +LF R  R L +T +
Sbjct: 1   MNTTDLELFVRTADIGNITAAAVQLDISPAAASAALKRLEKQLGTELFIRSTRQLRITAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    L+  +  + E   + +G++R++ + DLG+NL+   L E +   P +
Sbjct: 61  GERFLLHCRQALSSLDDAKASITEMKGEIAGEVRLSVSSDLGRNLILPWLDEVMDNNPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             QL + +   D  MD  D A+R  +P + S++I  KL T+     A+P Y+     P  
Sbjct: 121 SFQLSIGDSLADFYMDKVDVALRYGQP-EDSTMIAFKLATVDRVICASPAYIATYGSPQK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----------PRISCLQVNSYLSI 231
            ++L  HN + +        +   +    D  I                S    N    +
Sbjct: 180 PEDLLHHNCLLYQLGNKTYNQWDLFSKNSDDTISNTDDSIKSKYKIKVSSNRMCNDGDIV 239

Query: 232 MQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
            ++ V G GIAL     +  +     +V +M D      +++   P   + T  +
Sbjct: 240 RRWAVAGKGIALKSRLDLSHDLNAGRVVELMPDYYVKPTSLWLICPSRKQVTPAI 294


>gi|110635272|ref|YP_675480.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286256|gb|ABG64315.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 297

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 126/294 (42%), Gaps = 9/294 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + + L VF  +A   S   AA+ L ++ S++S  + G+E  +G++LF R  R +  TE
Sbjct: 3   RIEPNDLSVFLAIAHHRSIRKAADMLGVTPSALSHSLRGIEERLGVRLFNRTTRSVAPTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    +  +  +E    +L      P+G LRI       + +L   +  FL  YP+
Sbjct: 63  AGERLFDRIAPAFRDIEDALEDLNTFRDTPTGSLRINAGRSSAETVLIDVVARFLTAYPN 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREP 180
           + ++++++N  +D+     D  +R  + +    +I   L     +A  A+P + +    P
Sbjct: 123 VSVEIVVENALVDMVSQGFDAGVRFGEVLAQD-MIAVPLGPPQRNAYVASPAFFRRYSMP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
              ++L +   I F     +    + W    D       +   L V      ++  + G+
Sbjct: 182 THPEQLKELPCIRFRF---QSGRYYAWEFERDGAELAVEVEGPLTVGEQDLGIRAALRGT 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA   +  V D      LVR++ED        +  YP   +    L+AF +F+
Sbjct: 239 GIAFAFEDQVGDLLAEGKLVRVLEDWCPYYKGYHLYYPSRRQLPATLRAFVDFV 292


>gi|222147135|ref|YP_002548092.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221734125|gb|ACM35088.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 296

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 131/293 (44%), Gaps = 6/293 (2%)

Query: 1   MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+     +L V   VA + SF  AAE+L ++ S++S  +S LE  +G++L  R  R +  
Sbjct: 1   MNRIQLSQLAVLATVAETSSFRKAAEELGIAPSAVSHAVSALEASLGVRLLARTTRSVAP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE+G +L +  +     + T    L E+   P+G LRI       ++L+   L +FL LY
Sbjct: 61  TEEGRQLLQKLAPALADIGTALETLAENKSNPAGPLRITMPALAAEDLIVPRLGDFLGLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDIQ++LI +++  DI     D  +RL + +++  +  +    I      AP Y +    
Sbjct: 121 PDIQLELITNDQFEDIVEKGFDAGLRLGEHLETDMVAVKASGPISGTIIGAPSYFERHPL 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P+   +L +H  I       +       L    + I       L +     I    + G 
Sbjct: 181 PVHPHDLMEHRCIRRRFSSGRIYRWE--LEKHGKQIAVDVPDVLTLADQRLIRLAALKGV 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+A + D  V  +     L+R++ED   P    Y  YP   +    L+AF +F
Sbjct: 239 GLAFVFDQRVDKDIREGRLIRVLEDWCPPFDGFYIYYPTRRQMRPALRAFVDF 291


>gi|241205977|ref|YP_002977073.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859867|gb|ACS57534.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 299

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 135/293 (46%), Gaps = 5/293 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F     +G F+ AAE+LHL++S++ + I+ LE  +G++LF R  R  +LTE+G 
Sbjct: 4   LKGISIFVEAVEAGGFSAAAERLHLTRSAVGKTIARLEQRLGVRLFNRTTRMQSLTEEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        ++   +  L+       G+LRI+  +  G++ +   L   L  +P++++
Sbjct: 64  FFYERCLRAVEEIRLGEAMLESGRRDVRGRLRISMPVLFGRHCIAPTLARLLDEHPNLEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  +++ +D+  D  D  IR      +  L+ R +    M   A+P YL+   EP ++ 
Sbjct: 124 DLSFNDRIVDLLEDGFDLVIRNGPLKDNPDLMARAIARQRMTVCASPAYLEKHGEPQTVF 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++ +H  I +          F   A   R +     + L+++   SI    V G G+A L
Sbjct: 184 DIPRHEGIVYRRGDDDKGWIFPTAADPGRRL--VPKARLRLDDLASISDAAVAGRGLAWL 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++V++      L+++++      F  +  +  +     K++   + +  + 
Sbjct: 242 PCWLVREEVLAGRLIQVLKQEPANVFDAHAVWLRSPVMLPKVRLAIDTLAARL 294


>gi|86146275|ref|ZP_01064600.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85835986|gb|EAQ54119.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 295

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 10/293 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     ++ F V    GSFT AA+++ +S+S +SR +  LE  +  +L  R  + L+LT
Sbjct: 1   MNV-LTSIKSFIVTVEEGSFTGAAKKIGVSKSLVSRHVRELEAYLNTRLLNRSTKSLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +   +E     L+  S +  G L +     L + +L   + +F   YP
Sbjct: 60  EVGRRYFNEAHGLVDGIEDLNDSLRFDSSEMVGSLSVMAPKGLTEIMLMPFILKFSNKYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           D+   L+L +   D++    D AIR    + +   +I R +        A+P YL+N  E
Sbjct: 120 DVAFNLMLSDGVQDLATVGYDIAIRSGDLVSKDLGMIARTIFVNQNLVCASPKYLENNTE 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
             +  +L  H +I      P    D  W         +  +   L VNS  ++      G
Sbjct: 180 ITTPIDLANHTII----EDPNLKNDGVWRFEFGGYFHDVNLKPTLTVNSVQAVKVAVRFG 235

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            GIA+LP  + +++     +V I+        TVY  Y E +    K+K F +
Sbjct: 236 YGIAMLPRQLAEEDVESGAIVEILSQYTLKERTVYALYRERVNTPRKVKVFID 288


>gi|86158636|ref|YP_465421.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775147|gb|ABC81984.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 300

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 133/295 (45%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++ VF  V  +GSFT AA  L L +SS+SR ++ LE E+GI+L  R  R L+LT+ 
Sbjct: 1   MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEGELGIRLLQRTTRRLSLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  T +    L     E      +P G +R+   +DL  + L      FL  +P +
Sbjct: 61  GRAYYERTRDALAGLREASEEAAALGAEPRGTVRVTAPVDLAPD-LARLTDAFLRAHPQV 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L  + +D+  +  D AIR    +  SSL+ RKL    +  +AAP YL+    P  
Sbjct: 120 RVEVSLTARYVDLVKEGFDLAIRAG-VLADSSLLARKLSDSALALFAAPSYLEARGRPRR 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +H+ + +       +         ++     R +    + +  +    + G+GIA
Sbjct: 179 LADLARHDCLLYRAGGETAVWRLTGRRGEEQVTVRGRAAA---DEFAFVRGMLLAGAGIA 235

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+P  +V  +     L R++   +     V   +P        +  FR+ I    
Sbjct: 236 LVPTGMVAAHLRTGALERVLPQYVRRGGPVSVVWPSRRYEPVAVARFRDAIVAAL 290


>gi|83716781|ref|YP_439353.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167615896|ref|ZP_02384531.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142473|ref|ZP_05590735.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650606|gb|ABC34670.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 300

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 136/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+
Sbjct: 1   MDRFQEMQVFVRIAERQSFSRASDDLQIPRATVTNLMKRMEARLGTRLLERTTRTVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   LE  +   +++   P G LR+     L +  +   L +FL  YP 
Sbjct: 61  DGQAYYRRCVRLIADLEEAEGAFRDA--APKGLLRVNLQGTLARYYVVPALPDFLARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IRLHIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            +  L  H  + +  +     +      TVD  + E R+ + + V          V G G
Sbjct: 178 DLAALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P Y + D   +  L  ++     P   V   YP++ + + +++ F  ++  +
Sbjct: 236 IVQVPRYRIADELAHGCLKIVLAAYPPPPMPVSVLYPQSRQLSSRVRVFARWLRER 291


>gi|327396143|dbj|BAK13565.1| putative HTH-type transcriptional regulator YeaT [Pantoea ananatis
           AJ13355]
          Length = 310

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 128/295 (43%), Gaps = 10/295 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VA  GS T AA  L LS +++S+++S LE  +G++L  R  R L LT +G +
Sbjct: 13  DDLAFFLRVASLGSLTAAARALGLSLAAVSKRLSLLEQRLGVQLLRRTTRKLELTPEGRR 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   +  +   + +  G L I  +   G+  +   +  F  L+P + + 
Sbjct: 73  YLEGARPLLEQLVALEDAVSGETAELRGTLNINASFGFGRRHIAPCVSAFAALHPHLALS 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ++    + D  IR+ +P   S L+ RKLV        +P Y      P SI+ 
Sbjct: 133 LQLSSQPLNFLDAHVDIDIRVGEP-PDSRLVARKLVHNPRVLCCSPAYAAKHGLPDSIRA 191

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +HN I    L+ +   DF  W    D   + +     L  N     M+  + G GI L
Sbjct: 192 LAQHNCI----LLRQHDSDFALWRFVSDAESLSQKVRGNLVTNDGEVAMRMALDGHGILL 247

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              +  K +     L  ++ +  +P   ++  +    +   +L AF  F+  + +
Sbjct: 248 RSWWDAKHSIAAGELRHVLPEWRSPDGDIFAVWQAQRQQPSRLMAFVTFLQERLQ 302


>gi|254000005|ref|YP_003052068.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253986684|gb|ACT51541.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 310

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 135/312 (43%), Gaps = 18/312 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F      GS    A Q+ ++ ++ S+ I  LET +GI+L  R  R + LT+
Sbjct: 1   MDTLRSIETFVRAVEHGSIAAGARQIGITAAAASQNIQRLETTLGIRLLSRSTRSMALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   LE  +  + E   +P G+LRIA +   G+N++   +  F+  YP 
Sbjct: 61  AGQLYYNAVKDILRDLELAKSSITEFQGEPQGRLRIACSAAFGRNVIADMIPPFMRRYPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LI  +  ID   +  D +IR ++ ++   +I R +  + +   A+P YL     P 
Sbjct: 121 ISVELITTDNPIDHITENIDISIRFKQQLE-PGMIARHIARVPILFCASPDYLARAGRPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
             +EL  H  +TF   +P       W    D    EP I+  +  N   ++ +  V G+G
Sbjct: 180 QPEELSHHACLTF--RVPASGRMLGWGFLRDGLRFEPDITPTVNSNDIDALARLAVGGAG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVIT---------PSFTVYFCYPEALKNTGKLKAFRN 288
           IA L  ++ +   D+  L  +     T              Y  Y +    T KL+ F +
Sbjct: 238 IARLGAFVAQPLIDSGQLEALFTGNATSEGAVTADIEPLDFYVSYQDKHAMTHKLRVFVD 297

Query: 289 FIFLKA-RDWKF 299
           ++      +WK 
Sbjct: 298 YLVEVMPEEWKM 309


>gi|302878608|ref|YP_003847172.1| transcriptional regulator, LysR family [Gallionella
           capsiferriformans ES-2]
 gi|302581397|gb|ADL55408.1| transcriptional regulator, LysR family [Gallionella
           capsiferriformans ES-2]
          Length = 299

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   +F  +A   S   AAE L + ++++SR+++ +E  +G +L  R  R LTLTE G +
Sbjct: 7   DDYILFATIAEFHSMVRAAEHLVMPKATVSRRLANMEAALGQRLLIRTTRRLTLTEFGLE 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  V  ++   Q  ++    +P G+LR++   D  ++     +  F+  Y +IQ+ 
Sbjct: 67  FLDHCRRVSDEVAAVQDFVRSQDAQPHGRLRVSMPGDYARHHFSRAIATFIDAYAEIQLD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D+  +  D AIR+      ++L+ RK+   H   YA+P YL     P    E
Sbjct: 127 LDLSSRRVDLIGERYDLAIRMGDLTDDATLVARKIDEQHFALYASPIYLALHPAPNHPDE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  +    L+        W    D+ + E      L +NS   I Q  + G+GIA L
Sbjct: 187 LAQHTAV---RLLSDRGNAVPWNLQSDKTLWEAIPPGRLTLNSPDMIQQLLLDGAGIAAL 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P    + +     LV+++ D   P+   +   P       K +AF + +
Sbjct: 244 PCSFARADLQQGRLVQVLPDWSLPTVPAWAVMPMRRYLPAKTRAFISHL 292


>gi|153002726|ref|YP_001368407.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151367344|gb|ABS10344.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 306

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA+ GS+T AA+ L ++ S++S+ I  LET +G KL +R  R ++LT  G   
Sbjct: 8   EIRHFVTVAQLGSYTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        L+  Q  L      PSG++R+   +  G+  +   L      YP +++ +
Sbjct: 68  LKDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLALSQKYPKLELSI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++  D+  D  D A+R+ +   +  L+ R+L        A+P Y      P    +L
Sbjct: 128 TFNDRTTDLFSDGIDLAVRVGQLGDTVDLVARRLGEQRRVICASPAYFARLGTPKDKADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVLGSGIALL 244
            +H  I    +     +   WL   +  I E        ++    +I+   + G G+A +
Sbjct: 188 SQHQCI----VGWPLGQQHRWLLKNEDGIIEAYDIPVRHEIADCEAILAATLAGVGLAQV 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P ++V+D      L+ +++++ +    ++  + +      KL+     +   A+
Sbjct: 244 PIWLVEDYLKTGELISVLDELASDDTPIHLIWLKTPYLQPKLRVIIEELAELAK 297


>gi|242240570|ref|YP_002988751.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242132627|gb|ACS86929.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 304

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 120/288 (41%), Gaps = 6/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +A  GS T  A +  LS  ++S++++ LE  +G++L  R  R L LT +G  
Sbjct: 5   DDLLFFSRIAALGSLTAVAREQGLSLPAVSKRLTQLEQRLGVQLIRRTTRRLDLTSEGQL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  + +++E  +  ++ + +   G+L I  +   G+  +   +  F L +PD+ IQ
Sbjct: 65  YAAGALPILNEIEALEGVVRRNQLALRGRLTINASFGFGRRYIAPLISSFSLQHPDLDIQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +++     D  IR  +P   S L+  +L+       AAP YL     PL++ +
Sbjct: 125 LQLTSQPLNMPDSAVDIDIRFGEP-PDSRLVAHRLMKNPRVLCAAPAYLARAGIPLNVTD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN +                    +         L  N    IM+Y   G GI L  
Sbjct: 184 LANHNCLILRQYESDYGLWR--FYRDGQEYTHRAFGNLSSNDGEVIMRYARDGHGIILRS 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V        LV ++ +   P   VY  Y        ++ AF  ++
Sbjct: 242 HWDVSPWLARGELVGLLTEYTIPGADVYAVYQHRRHVPARITAFIGWL 289


>gi|168235808|ref|ZP_02660866.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194737898|ref|YP_002114706.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|204927892|ref|ZP_03219093.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|194713400|gb|ACF92621.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197291155|gb|EDY30508.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|204323234|gb|EDZ08430.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 301

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++  +    +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNH-SYDLPLALVYPQNRFLPPTVRAFYDW 289


>gi|126739601|ref|ZP_01755293.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126719247|gb|EBA15957.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 313

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 133/299 (44%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRISPAVTSARISQLEDYLGVRLFQRTTRNLTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++  + ++   +  P G L +A  +  G+ L+   +  FL  YP
Sbjct: 60  EQGQAFYTGAVSVLDAVDQAEAQVMHLTDTPRGTLFVAAPLGAGRRLVAPEVPTFLKEYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L + ++ +D++ +  D A  L +P + S+L  RK+        AAP YL    +P
Sbjct: 120 EINMRLRMSDRSVDLTTEGLDLAFFLGQP-EDSNLRIRKIADCQRVLCAAPEYLARRGKP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S ++L  DKHN +      P   E    L T + P         + +    +  + + G
Sbjct: 179 ESGEDLVKDKHNCLNL--RFPGASEFQWMLQTEEGPQRFAISGRYECDDGDVLTDWALSG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL P + V ++     LV + +        +   Y        K + F  ++  + 
Sbjct: 237 EGVALKPVFEVAEHLQSGALVPVAQKTPPVPVQMACLYTHRRHQDPKTRLFMEYMTQRV 295


>gi|254524366|ref|ZP_05136421.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721957|gb|EED40482.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 313

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF     +GSFT A  ++ LS+S++ + ++ LE  +G +L  R  R L LT +G+
Sbjct: 9   LQGISVFVQAVDAGSFTAAGLRMGLSKSAVGKSVATLERRLGTRLLDRTTRRLALTVEGA 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++V   +  +L+  +        +P+G LR++  +  GQ  +   L      +  +Q+
Sbjct: 69  EFYQVCRRILAELDEAESRAASRRQEPAGMLRVSLPVAFGQRWVMPILVALAQRHSGLQL 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D+  +  D A+RL    +SSSL  R L   H    AAP YL     P  + 
Sbjct: 129 DVSFTDRAVDLLEENIDLAVRLGTLAESSSLSARALGHQHSVICAAPAYLAARGVPHDMA 188

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +L  H+ ITF   G  +P      +      R  G  RIS        ++    + G GI
Sbjct: 189 DLAGHDCITFGRQGHALPWSTPGPDGTVVRHRIQGRHRIS-----DGEALRSALLAGLGI 243

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                ++V +   +  LV ++    TPS  ++  +P       K++A  + + 
Sbjct: 244 GEATTWLVGEELRSGELVGVISADSTPSGPIHAIWPTTRDLAPKVRAAVDALV 296


>gi|121604246|ref|YP_981575.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593215|gb|ABM36654.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 300

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 130/295 (44%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D LR   +  + GSF  AA  L +++S IS+ I+ LE + G  LF R  R + LT 
Sbjct: 1   MDRLDALRALVLSKQCGSFAGAARALGVTRSQISKLIASLEADYGGALFARTTRSVALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ LH    E+       +  +       +G LR+   +  GQ +L   L  FL L+P 
Sbjct: 61  AGATLHSYALELLAIDAEAREAMAALQGMVAGPLRVNAPMSFGQLVLAPLLPGFLALHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ L+++ +D      D  +R+ + ++ SSL  R+L  +    YAAP YL+    P 
Sbjct: 121 IELRVELNDRLLDPFEHGFDLTLRIAE-LEDSSLAARRLCGVPRAIYAAPGYLQAQGVPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S Q L  H  + +       +     L              L  N+   +++  + G+G+
Sbjct: 180 SPQALKAHRCLNYAHTNTGHVWR---LGRGGEKAHVAVGGPLCSNNGEVLLEAAMAGAGL 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            L P ++      +  LV ++     +P   +Y  YP   +    ++A  +++  
Sbjct: 237 ILQPAFLAAGHLASGRLVPVLAQWQESPEIALYALYPATRRVPVAVRALIDYLVA 291


>gi|296448013|ref|ZP_06889918.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
 gi|296254467|gb|EFH01589.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
          Length = 299

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 128/301 (42%), Gaps = 9/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +  F  V     F  AA  L +S S ++R ++ LE  +G++L  R  R + LT+
Sbjct: 1   MDRFDTITAFIAVVDHKGFAPAARSLGVSASLVTRLVAALEERLGVRLLQRTTRSVGLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +   LE  +   +     P G+L ++  +  G+  +   +  ++  +P 
Sbjct: 61  AGARFLERARRIVADLEEAERVAENERSAPRGRLSLSAPLMFGRMHIGPLIGRYMNAHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ +D+  +  D A+R+   +  S+L+ R++         +P YL+    P 
Sbjct: 121 LSVELSLSDRFVDLVEEGFDLALRIGH-LSDSALVARRMGATRRVVVGSPAYLEARGAPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L++H LI+   L       F    +               NS  + + +     G+
Sbjct: 180 TPADLERHRLISCTSLTSAGRWRF---WSDGERFDIDAAPAYVTNSAEAAIWHAENNGGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +   Y + +      L  ++ D       ++F YP A   + K+++  + +  +  +W 
Sbjct: 237 TIAAGYQIIELVRAGRLAVVLVDYEPTPLPIHFVYPSARLLSAKVRSLID-LAARECEWT 295

Query: 299 F 299
           F
Sbjct: 296 F 296


>gi|262172925|ref|ZP_06040602.1| putative LysR-family transcriptional regulator [Vibrio mimicus
           MB-451]
 gi|261890283|gb|EEY36270.1| putative LysR-family transcriptional regulator [Vibrio mimicus
           MB-451]
          Length = 309

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 139/302 (46%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F  +AR  SFT AA ++ ++++++S+ +  LE ++ ++L  R  R +
Sbjct: 1   MRIEPSLLSSLTWFAHIARHRSFTKAASEMGITRAALSQHLKALEQQLQVRLINRTTRNM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L  +       +E    EL +S V+PSG +RI+ +    + L++ +L EFL 
Sbjct: 61  SLTEEGQRLLDILQPSLMSIEQVVNELNDSHVEPSGLIRISVSRTAARLLIEPHLGEFLS 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I+++LI+D+   +I  +  D  IRL   +    +       +      AP Y K  
Sbjct: 121 RYPKIRLELIMDDGFSNIVAEGVDAGIRLGISLDEHMVAVPITPPLTTAIVGAPDYFKRN 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQY 234
             P + ++L+ HN + +       ++ ++  +        + EP+ + +  N   S++Q 
Sbjct: 181 GTPQNPEDLETHNCLAYRFTSSGTIDHWSLTSPDIEKHTVVFEPKGNAV-FNDDHSMLQA 239

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G G+    D  V+ +     L R++          Y   P       K++   +F+ 
Sbjct: 240 AIQGVGLVKHIDLWVEKHINEGRLSRVLAPWCKSFPGFYLYIPSREHMPKKIRVLMDFLI 299

Query: 292 LK 293
            K
Sbjct: 300 EK 301


>gi|186893691|ref|YP_001870803.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|186696717|gb|ACC87346.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
          Length = 327

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 138/292 (47%), Gaps = 10/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +    S + AA +L+++ SS SR ++ LE ++G+ L  R  R + LT+ G  L 
Sbjct: 23  LENFIKIVECNSLSIAAHKLNITPSSTSRSLAQLEEKLGVVLLKRTTRSIVLTDAGDYLF 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L+ T +        P G+L+I  +I  G   L     ++     D+ + + 
Sbjct: 83  HQARQLLLDLDETLVNTHSFYNHPQGQLKITCSIAFGVCHLMHLFSQYKETNSDVCLSVD 142

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ ++++ ++ D A+R+   I   +   R++ TI+     +  YL     P +I++L+
Sbjct: 143 LNDQLVNLNEEHFDIALRITS-IPPPNFAIRRICTINWVYCGSKEYLMKRGVPATIEDLE 201

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ +    + P   + + + +T    +     + +Q NS L ++   +   GI  LP Y
Sbjct: 202 QHDCL----VNPNVSDAWLYKSTEGESVPLKIKNTVQANSSLGLLHAALHHQGIVCLPTY 257

Query: 248 IVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++ D   +  LV I+ D       + +Y  Y  +  N  K+++F +F+  + 
Sbjct: 258 MLGDYITSGKLVPILLDYNAKDKEYGLYALYYPSKYNDPKIRSFIDFMLDEL 309


>gi|187920397|ref|YP_001889428.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718835|gb|ACD20058.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 300

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 6/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR GSFT AA +L +SQS++S  +  LE  +G+KL  R  R +  TE G +L
Sbjct: 8   DLLAFVAVAREGSFTRAAARLGMSQSALSHAMRALEERMGVKLLNRTTRSVAATEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +  + ++E   +   ES  +P G +RI  T      ++   L + L  YPDI+++L
Sbjct: 68  LRSIAPRFEEIENELVAAVESRDRPVGTIRITATDYAIDTVIWPRLSKMLPAYPDIKVEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++D    DI  D  D  +R    +    +  R      +    +P YL+    P   ++L
Sbjct: 128 VVDYGLADIVADRFDIGVRWGDQVAKDMIAVRIGPDARLAIVGSPEYLEKHPAPKHPKDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             HN I     +P     + W  T      + R+      N    ++   + G G+A +P
Sbjct: 188 VNHNCIRL--RLPTLGGIYAWELTKGSRKIQVRVDGQFTFNGAYQMLNAAIDGVGLAFIP 245

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + + + +     L   + D       ++  YP   + +  L      +
Sbjct: 246 EDLAQPHVAAGRLRWALPDWYPTFPGLHIFYPSRREYSKALSIVVEAL 293


>gi|294650415|ref|ZP_06727777.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823686|gb|EFF82527.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 328

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 125/289 (43%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V  SGSFT AAEQ+ L+ + +SR IS LET +G+KL  R  R   LT+ G+
Sbjct: 20  LHAMHAFLKVIDSGSFTAAAEQMDLTTAQVSRLISELETRLGVKLLQRSTRQHALTDIGA 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V   +E  + E   ++ KP G+LRI +    G   +   + EF   YPD+ +
Sbjct: 80  TYAERCRQVLSIIEEAEAEATGTAAKPKGRLRIQSMASFGHYYVAPVMAEFCQTYPDLTV 139

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +        D+     D ++ L + +  S  + R++ +I     A+P YL+    P S  
Sbjct: 140 EYRTSQNAPDLLAKGIDVSLYLTESLTDSRFVSRRIGSIFSVLCASPTYLQKHGIPQSPD 199

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  +    + P     ++ +              L  ++   ++       GIALL
Sbjct: 200 ELHDHACLRL--VNPSITPQWHLVGENSCSYQIDISGQLIADTPELLLDMVQQDMGIALL 257

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P + V D     +L  I+    +P   VY   P       K +A+ N++
Sbjct: 258 PMFAVIDAVRAGHLCHILPAWRSPYIGVYTLLPSRHFIDAKTRAWLNWV 306


>gi|323496183|ref|ZP_08101241.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323318460|gb|EGA71413.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 293

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 131/295 (44%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  SG F+ AAE L +  + +SR +S +E ++G+ +  R  R + LT++G +
Sbjct: 6   DDLEILLAVVDSGGFSAAAETLDIQVARVSRAVSKVEKQLGVSILNRTTRRIELTDEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +++  + E+     +P G+LR+        + L   + +F   YPDI+++
Sbjct: 66  FVEAIRVGLGQIQQAEEEIISRGERPQGRLRVDAASPFVFHQLVPLIGDFQKQYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ + +  S+L  R L    ++  AAP YL     P    +
Sbjct: 126 LSSNEGFVDLLEKKTDLAIRIGQ-LNDSTLHARPLGRSPLYFVAAPSYLAKRGLPQQTTD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ I F  + PK +  +                 L  ++  ++ Q  + G GIA L 
Sbjct: 185 LTHHDTIGF--IGPKVLNQWPLKGFTHLQ------PSLTSSNGETVRQLALAGHGIACLS 236

Query: 246 DYIVK---DNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++VK   +   L+ ++E+          V   Y ++     ++ AF +FI  K 
Sbjct: 237 GFMVKKDIEEGRLMSLLENDKLTHSGREQVNAVYYKSSNVARRISAFIDFIQPKL 291


>gi|254501906|ref|ZP_05114057.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222437977|gb|EEE44656.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 309

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 131/290 (45%), Gaps = 8/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +RVF  V+R  SF  A++ L ++ +S++R I+ LE ++G +L  R  R + LT  G
Sbjct: 8   DLKPIRVFLEVSRLQSFAAASKTLGMTPASVTRVIARLEQDLGHQLLVRTTRKVALTSVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +      V    +  Q +L+       G+L I   +  G  +L   L+ F L YP+I 
Sbjct: 68  ATVAARYQPVVESFDRIQRDLEREMQPHRGRLSINAPMSFGLRMLPSLLESFKLAYPNID 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++L +  +D+  +  D AIRL +P +  S I RK+  +   A AAP +L+    P + 
Sbjct: 128 LTVMLTDTLVDVVAEECDLAIRLSEPPRDKSTIWRKICEVPRCAIAAPVFLERAGRPETP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
             L     +++G       E   W                L  N+   +      G+GI 
Sbjct: 188 DTLTPDMCLSYGS----GQEPEAWRFQKGGIKRTILTGPGLHSNNGDFLYAMARSGAGIT 243

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +LP++IV D   +  + R++ D I PS  +   YP        +  F +F
Sbjct: 244 VLPEFIVADGLRSGEVERVLPDWILPSLWLSLYYPPYEALPPLVATFTDF 293


>gi|148553181|ref|YP_001260763.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498371|gb|ABQ66625.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 296

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 128/287 (44%), Gaps = 11/287 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           +   +F  +  +GS + A  +L +S + +S++++ LE  +G  L +R  R L LT+ G  
Sbjct: 3   EDYNLFVTIVEAGSLSAAGRRLRISPAMVSKRLARLEARLGATLVHRTTRRLLLTDVGQG 62

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +   S +   + T +  +     +P G+LR++     G+  +   L  FL  YP I++ 
Sbjct: 63  FYEDASHILDAVRTAEARVAGRVGQPGGRLRVSAPTSFGRMHVAPYLHAFLDRYPRIELS 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD+  +D+  +  D AIR+    + S L+   L        AAP YL     P ++ +
Sbjct: 123 LDLDDGFVDLLGERIDVAIRIATRPEGS-LVAHHLAENRRILCAAPAYLAAQGTPATLAD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H L+      P  +E        D P+G   +S ++ NS     +  V G GIAL  
Sbjct: 182 LSRHRLLAADHQFPWRLE------GSDGPVGLDGVSAVRTNSSEVARELTVAGLGIALRS 235

Query: 246 DYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRN 288
            + V     + +LVRI+ ++       +Y   P          AF +
Sbjct: 236 TWDVGPALRDGSLVRILPEISGATDVAIYAVQPRGTAGAPNAGAFVD 282


>gi|323492162|ref|ZP_08097320.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323313475|gb|EGA66581.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 304

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 135/295 (45%), Gaps = 10/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  +GSF+  A++L +S SS+SR I+ LE  +  KL  R  R + L+  G 
Sbjct: 10  LSEMAIFVNVVETGSFSKTAKKLGVSPSSVSRSITRLENTLEEKLLERTTRQMRLSTTGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++ + S++ H  +      Q    + SG LR+A    L + +L   + +F+  +P + +
Sbjct: 70  EVYSLCSDMMHSAKLAVSAAQTDKSEVSGVLRVAAPKALSRQVLMPMILDFIQEFPKVSL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + +  ID   D  D  I +     +  LI R L    +   A+P YLK    P    
Sbjct: 130 QLKVADHYIDPIGDEVDVIIHITDK-PNIGLIARTLSQCRLVLCASPDYLKQYGTPQHPD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++  HN +  G+     + DF      ++ +         VN      +  + G G+++ 
Sbjct: 189 QITDHNCLCLGENPRDRIWDFT---QDEQKLSINANGSFAVNHSEIRREAVLRGIGLSVF 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P++ ++   D+  +V +++D          V   Y ++    G++KAF +++  K
Sbjct: 246 PEFAIQEYLDSGQVVEVLQDWHIGGNYQGQVIAQYAQSKFIPGQIKAFVDYMQSK 300


>gi|157372074|ref|YP_001480063.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323838|gb|ABV42935.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 302

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT+ G +   
Sbjct: 8   EVFITIVDRGSMIAAAETLEMSRAMVTRYLAQMEQWAGARLLHRTTRKLSLTDAGERTLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++        +   E S +  G LRI  +  LGQ  L G + ++L  +P + + L +
Sbjct: 68  RCRQMLALAGEIDLVEGEQSDELRGLLRITCSQSLGQTALVGAVAQYLKRHPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L +      AAP YL     P   Q+L  
Sbjct: 128 NNRAVNLVEERIDLALRITNEL-DPNLIARPLSSCASVVCAAPAYLAAHGTPRHPQDLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                            L  N  + +M   V G+G+++ P Y 
Sbjct: 187 HNCLTYSYFGKSLWH----FDHQGVKSAVAVSGNLSANESVVLMAGTVQGAGVSMQPYYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+ +M D    S  +Y  Y    +    L+   +F+  
Sbjct: 243 AAPLLASGELIELMPDYRPQSMGIYGIYTSRRQMPATLRTMLDFLVE 289


>gi|17545871|ref|NP_519273.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428166|emb|CAD14854.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 297

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 139/299 (46%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  +  +     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGTAFLAHARGILAAVDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRAQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ ID+  +  D AIR+   ++ S+L  R+L T  +   A+P YLK    P
Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRIGA-LRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++  L  H L+ F  + P+ +  +         +       L+ +S  ++ Q  + G+G
Sbjct: 180 RTVDALRHHALLGF--VQPESLNHWPLRGPHGDRLRI--TPTLKASSGETLRQLALQGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  L D++   +    +LV+++ +        ++  Y    +   ++  F +   L+AR
Sbjct: 236 IVCLADFMTARDRRAGDLVQVLPEATVEIQQPIHAVYYRNTQLASRITCFLD--VLEAR 292


>gi|13472243|ref|NP_103810.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022988|dbj|BAB49596.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 298

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 115/289 (39%), Gaps = 5/289 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     +     F  AA+ L LS S++S  +  LE  +G++L  R  R +  TE G +L
Sbjct: 9   ELTALAAIVSHRGFRKAADDLGLSPSTLSHMMRTLERRMGVRLLNRTTRSVAPTEAGERL 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   ++    E+ +     SG LRI T+    + LL   +  FL  YP + + L
Sbjct: 69  VSRLRPLLSDIDAALAEVDDFRGLASGTLRINTSEIGARLLLGSVVPAFLQRYPQVALDL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + + + +DI  +  D  IRL + +    +  R        A A+P YL     P    +L
Sbjct: 129 VTEGRLVDIVAEGFDAGIRLGEAVPQDMVAVRFGGPTRFIAVASPAYLAGRTVPRVPDDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I F   +P             + I       L +++   + +    G GIA + D
Sbjct: 189 RDQACIRF--RLPSGKPYRWEFEKHGQEIAIDVPGALTLDNMELMAEAAAGGMGIAYISD 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              K   D   LV ++ED   P   ++  YP        L+AF + +  
Sbjct: 247 KSAKPYLDRGALVGVLEDWCPPIPGLFLYYPGHRLVPPALRAFIDVLKE 295


>gi|330901021|gb|EGH32440.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 266

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 111/259 (42%), Gaps = 6/259 (2%)

Query: 37  QISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLR 96
            +  LE  +G+ L  R  R   LTE G+  +    EV   +  ++   +++   P+G LR
Sbjct: 1   HLRALEERLGVSLLQRTTRRQRLTEFGTAYYERCLEVLGLVAESEQLAEQAHGDPTGTLR 60

Query: 97  IATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI 156
           I   +  G  +L   L EF   +P++++ L+L N+ +D+  +  D AIRL    +SS LI
Sbjct: 61  ITAPLTFGSEVLAPALVEFSRRFPEVKLDLVLTNQRLDMIDNGFDVAIRLGNIPESSPLI 120

Query: 157 QRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF--NWLAT-VDR 213
            R L    +   AAP YL     P   ++L +HN + F              W  T  D 
Sbjct: 121 ARPLQDYTLTICAAPDYLARHGTPTHPEDLRQHNCLAFAYPAGDEWRTAGTQWRMTGADG 180

Query: 214 PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVY 270
            +       +  N+   + Q    G G+ +LPD +V+ +     LV +  D   P     
Sbjct: 181 DVLVEVSGSMVANTSAGLYQAARAGMGVVMLPDALVQRDLQEGRLVALFPDYHLPRRPTN 240

Query: 271 FCYPEALKNTGKLKAFRNF 289
             Y +      KL++F  +
Sbjct: 241 LLYLQDRYRLPKLRSFVEY 259


>gi|298487123|ref|ZP_07005173.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298158366|gb|EFH99436.1| Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic
           enzyme [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 303

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 138/301 (45%), Gaps = 12/301 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M++ + D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++
Sbjct: 1   MNYPNLDDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMGVVLLHRSTRQVSI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +++     +   ++    E+     +PSG LR+ ++   G+  +   L E   LY
Sbjct: 61  TEDGERVYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I+L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YLK+   
Sbjct: 121 PKLDIRLDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PLSI EL  H+ +   +           L              L  N      Q+C+ G 
Sbjct: 180 PLSIGELANHDCLVIKERDRPFGIWH--LNGPQGAETVKVTGSLSTNHGEIARQWCLDGR 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L   + V+       LV+++ +    +  ++  +   L ++ K++    F+    RD
Sbjct: 238 GVLLRSLWDVRTDLAEGRLVQMLPEYRQDA-DIWAVHTSPLMSSAKVRVTVEFL----RD 292

Query: 297 W 297
           +
Sbjct: 293 Y 293


>gi|127514335|ref|YP_001095532.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126639630|gb|ABO25273.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 311

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 133/293 (45%), Gaps = 7/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ + L+++++SR+I+ LET+ G++L YR  R L LTE 
Sbjct: 1   MDLNRIQMFAQVVDKGSFTSAAKAMGLTKATVSRKIAELETDTGVQLLYRTTRALKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +     +   L++ + +L  S     G L+I   I+LGQ         FL  +P++
Sbjct: 61  GSIYYNKIQRILMDLQSAEDQLSASQETIKGNLKIVCPIELGQLFFGRIFARFLEAHPEM 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +   L N+ +D+  +  D   ++   ++ S L   +++       A+P YL     P +
Sbjct: 121 TLDAELTNRKVDMIEEGIDILFQVSD-VRDSRLQSYRVLNTDKSLVASPDYLARHGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H  I               L    + I     + L VN+     +  + G GIA
Sbjct: 180 PQDLIDHKAIRLKSTHIDGGWR---LFDGQQWITIEPEAQLTVNNVTLAREAAIEGLGIA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             P  + +   D  +L+ ++ D       +   +P       K +AF  +I+L
Sbjct: 237 TAPTLVAQAAIDEGHLIPLLTDFPMAQTAITLSFPRRAYLPRKYRAFIEYIYL 289


>gi|330974141|gb|EGH74207.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 304

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E+  G +L +R  R L LT  G     
Sbjct: 16  RVFIAINDRGSLIAAAEALDMSRAMVTRYLAQMESWAGARLLHRTTRKLGLTAPGQVTLL 75

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +  +L  YP     L++
Sbjct: 76  RCQQLVELADAVPLAADTQVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSADLLI 135

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        AAP YL     P   QEL  
Sbjct: 136 GNEAVDLVSERIDLAIRITNQL-DPNVIARPLGQCASVVCAAPAYLAVHGTPSRPQELSA 194

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E          P+  P    L  N  + +++  V G+GI+L P + 
Sbjct: 195 HNCLTYSYFGKSLWE----FTRQQMPLSVPVGGNLSANDSVVLLEAAVAGAGISLQPVHS 250

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+ +M +    +  ++  Y      +  L+ F +F+  
Sbjct: 251 AAPLIASGKLIALMPEYQPRALGIHAIYTSRHHQSATLRTFLDFLTE 297


>gi|156975122|ref|YP_001446029.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156526716|gb|ABU71802.1| hypothetical protein VIBHAR_02849 [Vibrio harveyi ATCC BAA-1116]
          Length = 301

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 145/296 (48%), Gaps = 9/296 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT 
Sbjct: 4   KVNLADIRSFVMIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLTRTTRTLRLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G + ++   +    ++   I   + + +  G +R+      +G++++   + EF+L YP
Sbjct: 64  AGERFYQECEKALRDIDQALIAAVDDTQEVRGLIRVNCVGGYIGEDIIAKYVNEFMLEYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L   +  ID+  D  D AIR+ + ++ +  + RKL+ I M   A+P+YLK   EP
Sbjct: 124 NITVDLDFSSPRIDLIEDQFDVAIRMGE-LEDTGFVARKLMMIDMVTLASPNYLKTHGEP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ +EL KH  +T           +  +A             L+  +  +++   + G+G
Sbjct: 183 VTPKELAKHRTLT----GSVTRWSYRNVANPQEHSDVIVKGNLRCKNGRALVMGALHGNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P     +      LV++M +   PS  +   +        +L+ F +F+  K
Sbjct: 239 IVRVPLSYCDEEVKRGQLVKVMPEWEIPSVPLSAIFHRDRYQPKRLRTFIDFVKAK 294


>gi|298489044|ref|ZP_07007067.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156542|gb|EFH97639.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 300

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF+ AA  L +S S++S  + GLE  + ++LF R  R + LTE G +L
Sbjct: 8   ELTAFVAIAEQRSFSGAARLLGVSPSALSHSMRGLEARLELRLFNRTTRSVALTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   LE    ++      PSG +R++ +    + L++  + +FL   P I I+ 
Sbjct: 68  FLRVQPLLGDLECAVNDVTSERNTPSGSIRLSASESSFKLLIRHVMPKFLEDNPQIHIEC 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I D++ +DI  D  D  IRL   +    +  R    +   A A+P YL     P +  +L
Sbjct: 128 IADSRLVDIVADGFDAGIRLFDDVPRDMIAIRFGPDVRFAAVASPDYLDIHPAPKAPHDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I F             L  + R         + +++   + +  + G GIA LP+
Sbjct: 188 KAHRCIRFRFASGTLFRWD--LGHLGRTASIDVDGPMTMDNINLMTEAALAGIGIAWLPE 245

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           + V++   +  LV ++ +           YP        L+ F        RDW
Sbjct: 246 HQVEEHLKDGRLVHLLPEWGPYYPGACLYYPANRHPPMALRMF----AEAVRDW 295


>gi|251788354|ref|YP_003003075.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247536975|gb|ACT05596.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 294

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F +VAR GSFT AA +L L+QS +SR I  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMLVAREGSFTRAATRLGLAQSGVSRAIRELEARLGVQLLSRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+R     +  L+     L      PSG +RI  +      +L   L  F L YPDI+
Sbjct: 66  EQLYRTALAGFDSLDLGLATLAHFRDTPSGTVRINASQHAIDMVLLPKLAAFRLRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ ++I  +  D  IRL   +    +  R    + M   A P + ++   P + 
Sbjct: 126 LELISESRFVNIIDERFDAGIRLGAEVDEGMIAVRIAPDMEMVVVATPDHFRHYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +            W     + +          +     +    LG G+A 
Sbjct: 186 ADLVVHPCIAYQFADGSLYHWELW--QDGKRLRHKPQGQWVFSDSYMEVAAARLGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +P+ +V D+     L+R+++        ++  YP     +  L+   + + L
Sbjct: 244 VPEELVADDLAQGTLIRVLQRYSHRLAGLHLYYPH-RNVSPALRMVIDALKL 294


>gi|89108638|ref|AP_002418.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|90111335|ref|NP_416313.4| DNA-binding transcriptional activator for dmlA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|170081455|ref|YP_001730775.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|238901013|ref|YP_002926809.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|3915993|sp|P76250|DMLR_ECOLI RecName: Full=HTH-type transcriptional regulator DmlR; AltName:
           Full=D-malate degradation protein R
 gi|1736422|dbj|BAA15594.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|87081978|gb|AAC74869.2| DNA-binding transcriptional activator for dmlA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|169889290|gb|ACB02997.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238862273|gb|ACR64271.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|260449080|gb|ACX39502.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|315136440|dbj|BAJ43599.1| putative DNA-binding transcriptional regulator [Escherichia coli
           DH1]
          Length = 307

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 135/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++I+ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   +     EL +    P G LRI ++   G+ ++   L      YP +++
Sbjct: 67  RIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALLALAKAYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFIAQHGAPKHLT 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L   + P        L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSALPCLVIKERDHPFGVW--QLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V +   + +LV+++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVSENIASGHLVQVLPEYYQPA-NVWAVYVSRLATSAKVRITVEFL 291


>gi|295688208|ref|YP_003591901.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295430111|gb|ADG09283.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 298

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 135/301 (44%), Gaps = 8/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +R+F  +    SFT AA  L L +S+ +  +  LE  +G +L  R  R ++ T 
Sbjct: 1   MDRFEAMRLFVRIVERRSFTQAAADLDLPRSTATEAVQQLEARLGARLLQRTTRQVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   L+  +   ++    P G LR+     L +  +  +L +FL  YP+
Sbjct: 61  DGEAYYRRCLRLLDDLDDAESAFRQR--TPRGLLRVDVQGALARRFVLPDLPDFLAAYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL   ++ +D+  D  DC +R+   +  S+++ R++  +     AAP YL     P 
Sbjct: 119 LKLQLTEGDRLVDLVRDGVDCVLRMGD-LTDSAMVARRVALLPEVTCAAPAYLARFGTPR 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H ++ F             +         P  + + VNS  + +   +LG G+
Sbjct: 178 TPDDLGGHRMVGFLQAATGHPYPLE-VTEGGNVRAVPVAADVTVNSAENTVAMGLLGLGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +P Y V+D   +  L+ ++ D       V   YP + + + +++ F ++   +  D +
Sbjct: 237 IQVPRYRVEDFLADGRLIEVLADYPPTPTPVSLLYPRSRQLSPRVRVFIDWTARRFSDER 296

Query: 299 F 299
            
Sbjct: 297 L 297


>gi|52425265|ref|YP_088402.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307317|gb|AAU37817.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 304

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L  F  +A +GSFT AAE+L ++ S++S+ +  LE  + ++LF R  R ++ TE G
Sbjct: 13  NLNELYFFVQIANAGSFTKAAERLGVTTSALSQNMRSLEKHLDVRLFNRTTRSISTTEAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL    +  +  +      L E   +P G +RI T+      ++   L+ FLL  P I+
Sbjct: 73  EKLLAEIAPHFLAIADAVRHLDEIRDEPQGTIRINTSEIAANLIIYPKLQPFLLANPHIK 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN+ +DI     D  +RL   + +  +  +    + M   A+P YLK+   P  I
Sbjct: 133 VELVIDNRWVDIVAQGFDMGVRLGYAVFNDMIAVQISEPMKMVLVASPGYLKDKPLPKKI 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  ++LI  G           W      + +G   +    +N+     Q  + G GIA
Sbjct: 193 NDLTNYHLI--GSRFSSEHSQLEWEFMDKGQKVGFQPMPQFSINN-DLRTQAALDGFGIA 249

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP+  V +   N NLV I+          Y  YP    N+   +     +  K
Sbjct: 250 WLPEIRVHEELKNGNLVEILPQYAYTYDPFYIYYPNRKGNSKAFQMVVELLKFK 303


>gi|300717356|ref|YP_003742159.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299063192|emb|CAX60312.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 302

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 127/294 (43%), Gaps = 8/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L++F ++   GS + A  +L LS +S+S ++  LE+        R  R L+LT++G 
Sbjct: 2   LENLKLFLMILEKGSLSAAGRELGLSPASVSERLMMLESYYKATFLTRTTRSLSLTDEGR 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +  +  ++  + K SG ++I   +DLGQ  +   L  FL+ +P + I
Sbjct: 62  MFAEGARRLLAEADELESRIRSGTQKISGPIKITAPVDLGQTRVVPILDRFLVQHPAVTI 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D++    D AIR  K   +S+L  R +         +P YL+    PL   
Sbjct: 122 DLNLTDSFVDLASQGIDFAIRYGK-FSNSTLKARAIGDNRRLVCGSPEYLQRRGTPLHPD 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L++H+ I    +      D  W   VD  P           N+   I Q+ + G G+  
Sbjct: 181 DLNQHDCIMMRFM---QGIDRVWSFQVDGAPYAVSVNGQRTTNNGQLIKQWALQGQGLCK 237

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + V+ +     LV ++ D   P   ++  YP +     ++    + I  + 
Sbjct: 238 KSIWDVEADLVAGRLVEVLADYALPPTALHIVYPPSRVQPRRVTKLIDVIAEEL 291


>gi|293607510|ref|ZP_06689845.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292814081|gb|EFF73227.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 301

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 129/299 (43%), Gaps = 15/299 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +GSFT AA+ L +  +++S+ +  LE  +G++L  R  R +T+T 
Sbjct: 1   MDQLTAIRGFARVVEAGSFTRAADSLDMPNATLSKMVQDLEAHLGVRLLQRTTRRVTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +     +   LE           KP G LRI       +++L   + +FL  YPD
Sbjct: 61  EGRAYYEKALRIVRDLEDIDGSFNAIQGKPKGYLRIDVGGSTARDVLIPAISDFLARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I   + ++ +D+  D  DC IR    +  SSL+ R + +  +   A P YLK    P+
Sbjct: 121 IRIDFGVSDRPVDLISDNVDCVIR-GGTLGDSSLVARHVGSADLITCATPAYLKQHGTPI 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCV 236
             +EL   H L+ +  L P+    F +    D        E R+   + N++L+     +
Sbjct: 180 YPEELKNGHKLVNY--LSPQNGRAFPFRFERDGEKLEIKVEHRVGVNESNAHLAAALAGL 237

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               I     Y       +  LV I++      +  +  YP     T +L+   +++  
Sbjct: 238 G---IVQTFTYASGEALRSGALVEILKPWRPQPYPFHVVYPHNRHVTQRLRVLIDWLME 293


>gi|260598476|ref|YP_003211047.1| hypothetical protein CTU_26840 [Cronobacter turicensis z3032]
 gi|260217653|emb|CBA31971.1| hypothetical protein CTU_26840 [Cronobacter turicensis z3032]
          Length = 391

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 122/289 (42%), Gaps = 4/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  +   GS T AA  L  + S +SR ++ LET +G++L  R  R L+LT+ G 
Sbjct: 99  LSDVEIFVTIIEKGSITAAAVALGTTASVLSRALTRLETRLGVQLVRRTTRQLSLTQAGR 158

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +      +   E  + ++Q    +  G +R++         L   L  F   YP I +
Sbjct: 159 HYYEQACSAFSVFERAERDIQGRGAETVGHVRLSAPTTYAHYRLPALLTRFAAQYPGITV 218

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L + N+++D+  +  D AIRL   +  S L+ RKL    +   AAP YL+   EP    
Sbjct: 219 ELNIANRNVDLVAEGYDLAIRLG-TLPDSRLVARKLEEAPLCLVAAPSYLRQHGEPQQRA 277

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  + F       +  ++           P+      +  L ++   V G+GI   
Sbjct: 278 DLENHRCLPFIMPSSGRVAQWSLCEEEKPVEWTPKGQIQVSDDILGVISLAVSGAGICQT 337

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D+I +   +N  L  I+      +      Y      +   +AF +F+
Sbjct: 338 YDFIARPFMENGLLTEILRQTRGRTRPFSLIYAPHKGLSSACEAFIHFM 386


>gi|319793104|ref|YP_004154744.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595567|gb|ADU36633.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 311

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  V  +GSFT AA +L +S    S+ ++ LE  +G +L +R +R L+LTE G+  +
Sbjct: 7   LRVFREVVEAGSFTAAAGRLAMSPPMASKHVAQLEKSLGARLLHRSSRHLSLTEAGTAWY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +      L+  +  + ++S  P G+L+++  +          L ++   +P++ + + 
Sbjct: 67  EQSRRALDLLDAAEAAIGQTSEAPRGQLKVSAPVWCATPRFARVLADYRERFPEVLVDMH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-PLSIQEL 186
           L+N+ +D++ D  D A+R  +   S +LI R L  +  H    P YLK     P    +L
Sbjct: 127 LENRKVDLAADGYDLALRATQE-PSPALIARPLCRVPFHLAGTPDYLKRMGGCPALPADL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +   I    +    +++        R +       ++ +     +     G GIA +P 
Sbjct: 186 SRLGAIVPSYV---NLDNLALKGPGGRMLPLRLTPAMRSDDTTLTLHAVHAGMGIAFMPL 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +++ D+     LVR++ D      T++  Y        KL+ F +F+  + 
Sbjct: 243 WLIDDDLAEGRLVRLLPDYEAQPVTLFAVYTSRQYMAPKLRTFIDFLGERL 293


>gi|149187187|ref|ZP_01865485.1| Transcriptional regulator [Vibrio shilonii AK1]
 gi|148838723|gb|EDL55662.1| Transcriptional regulator [Vibrio shilonii AK1]
          Length = 297

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 129/296 (43%), Gaps = 12/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +   +R F +VA  G+FT AAE L++S+S +SRQI  LE ++G+ L  R  R + LTE
Sbjct: 5   SINLLDVRAFVLVANLGNFTKAAEALNVSRSHVSRQIQSLEKQMGVSLLIRTTRTMKLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G             ++       +   +  G ++I      +G+ L+   L +FLL YP
Sbjct: 65  AGKAFLSSCDGALQSIDQAVHAAIDDVEEVRGSIKINCVGGYIGEELVANYLSQFLLNYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L   +  +D+  +  D AIR+   +  S+ I R L  I M   A+P YL    + 
Sbjct: 125 EVNIELDFSSHRVDLLEEEFDLAIRMG-VLPDSNYIARHLTNIEMQTLASPDYLAKYPKL 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              +EL +H  IT        +  + ++  +++ + E  I+  L+  +   ++     G 
Sbjct: 184 THPKELKQHKCIT------GSVTKWRFVNNINQEVFETSINGDLKCKNGRVLINAAKSGL 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  +P    +D      L  + +D       +   Y        K+K     +  
Sbjct: 238 GLIRVPTLYCEDELAAGVLKPVFDDWGIELVPLSLIYHRDRYQPRKIKECVRHLMA 293


>gi|70732524|ref|YP_262287.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346823|gb|AAY94429.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 302

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  ++ RVF  VA  GSF  AA  L L ++++S  +  LET +G +L +R  R + LT 
Sbjct: 1   MDKLEQYRVFIQVADMGSFIKAAHALELPRATVSSAVQQLETGLGTRLLHRTTRHVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +               +  SG+L I     + + L+   L  +L  YP 
Sbjct: 61  DGAILLERARRLLADAAELNQLFHHRQIDVSGRLNIDVPSRIARRLIVPALPRWLAQYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   +++ID+  +  DCAIR+   +  SSL+ R L  + +   A+P YL    EP 
Sbjct: 121 LQLALGASDRNIDLVQEGIDCAIRVGS-LADSSLVARPLGQLALINCASPAYLAEQGEPH 179

Query: 182 SIQELDKHNL-ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + Q+L      + +        + + +L    R       S + VN+  + +  C  G G
Sbjct: 180 TPQDLQNGQWMVGYASPDTGREQPWEYLLE-GREHLLGLPSRVIVNNVENYIACCRQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +P + V+   D   LV+++ ++      +   YP+    + +L  F  +
Sbjct: 239 LIQVPRFDVQHLLDRGELVQVLRELPVAPMDICALYPDRRHRSRRLNVFIEW 290


>gi|78061571|ref|YP_371479.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969456|gb|ABB10835.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 326

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 129/291 (44%), Gaps = 5/291 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + ++ LE  +G +L  R  R  +LT
Sbjct: 26  MTDRLDGVTTFVQVVESGSFALAAERLDMTRSAVGKAVARLEKRLGARLLQRTTRSQSLT 85

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +P GKLR++  +  G + +   + +    YP
Sbjct: 86  DDGQAYYDRCVRALAELEAAEADLDCGRNEPRGKLRLSVPLAFGHHCVTPIVLDLARTYP 145

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 146 HLRIDVSITDRFVDLVEEGIDLAVRIGTLADSTSLAVRRLGTQYGSLGAAPSYLARYGMP 205

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H  I +       ++ ++  A     +       L  +   +I      G G
Sbjct: 206 KTLDDLKDHRTIAYSR--SGVIQPWDLRAPDGSTVRIDMPHQLSFDDVQAIAAAGASGFG 263

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           IA LP +++        +  +++        ++  +P+      K +   +
Sbjct: 264 IAWLPSWLLDHYVKRGEMTVVLDRCFVCEGDIHAIWPKTRYLPRKTRCVID 314


>gi|330961833|gb|EGH62093.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 315

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 13/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILASVEEAEAEASDAHARPAGQLKVHSMPGVGQHYVIDAIARYRRNHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K      
Sbjct: 121 VAFDLTMTHRVPDLLEEGFDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
              +L  H  +    L+        WL   D P G+  +    S L VNS  ++      
Sbjct: 181 KPADLLNHACL---RLVSPVFPLDKWLF--DGPDGQEMVTINSSPLLVNSADAMKTAISS 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+ +LP Y   +   N  LVR++ D  +    +Y  YP       K++ +  ++
Sbjct: 236 GMGVGILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPSRQYLDAKIRTWVEYL 291


>gi|322836467|ref|YP_004215844.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321171020|gb|ADW76717.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 300

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 136/291 (46%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS+T AA  L +S S+IS+ I  LE  +G+ LF R  R L LT +G 
Sbjct: 10  LTGLIAFARAGALGSYTAAARSLTVSPSAISKSIQRLENHLGVTLFARTTRSLVLTAEGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +LH    ++    E  +   +    +P+G LRI+ +  +G +++   + +F  +YP+++I
Sbjct: 70  ELHERVLQLLQVAEDIEQLAKRKRAEPAGTLRISASYPIGLHMIAPVIPQFCTIYPNVKI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ + +  +  D A+RL   +  S+L+ R+L +  M  YA+P YL  C  P    
Sbjct: 130 DLRLSDRVLSLVDENIDIAVRLGD-LADSNLLSRRLSSYRMGCYASPEYLAQCAPPKHPN 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  +          + F W   V  R I     S + V++   ++   V G+GI +
Sbjct: 189 DLMGHKTVNL--RYQNTGQLFRWPFQVGGREIEILPSSNVVVDASEVVLASIVAGTGIGM 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              ++      N  LV ++ D       +   + E+ ++   ++AF + + 
Sbjct: 247 ATSFMADSWVKNEKLVPLLTDFTVERHNISALWHESRRSNPAVRAFLDHLI 297


>gi|170768885|ref|ZP_02903338.1| putative HTH-type transcriptional regulator YcaN [Escherichia
           albertii TW07627]
 gi|170122433|gb|EDS91364.1| putative HTH-type transcriptional regulator YcaN [Escherichia
           albertii TW07627]
          Length = 309

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 145/302 (48%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ AA ++ ++++++S+ +  LE  +  KL YR  R +
Sbjct: 1   MKIEPSILPSLAWFALIVRAGSFSRAASEMGITRAALSQNLKSLEERLNTKLIYRTTRNM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V    + +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 61  SLTEEGQRLYDVLVSAFGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHICEFLT 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  +  D  IR  + +    +    +   I +   A+P YL+ 
Sbjct: 121 RYPKTKIELIMDDGLSNIIAEGCDAGIRPGQGL-DEHMTAVPVSPLIKLITVASPDYLRK 179

Query: 177 CREPLSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
              P +  EL  HN +         +   +F++++  +             N   S+++ 
Sbjct: 180 YGIPETPYELSNHNCLRLRHKTSGALSPWEFSYISGNNEKFEIEASGRYIANDDESMIRM 239

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + +      L  I++D        Y      ++   K++AF +F+ 
Sbjct: 240 AINGAGIIQHLDFAIAEQIDAGKLQPILQDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 299

Query: 292 LK 293
            K
Sbjct: 300 EK 301


>gi|327484493|gb|AEA78900.1| Transcriptional regulator, LysR family [Vibrio cholerae LMA3894-4]
          Length = 315

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F V+ +  SFT AA  L +S S +S+Q++ LE  +G+KL  R  R  TLT+ G+  
Sbjct: 8   QMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E+   +   Q E+++   + +G +R+  +   G   +   L++    YP++ +++
Sbjct: 68  YSQCRELLTIVTNAQSEMEDQRDEVAGLIRLGLSQSFGTLHVLPALEQLRQQYPELNVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  I   + +     + +++        A+P YL     P     L
Sbjct: 128 HLFDHKVDMLKEGLDLWITSNEQLP-EGYVAQRIADCRFVVAASPDYLLRYGSPTEPMAL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + +        +   W  + D      +++    V+   ++    V G GIA L 
Sbjct: 187 MEHNCLIYRS---WERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            Y+++D      L++++ +         Y  YP          A   FI  + 
Sbjct: 244 TYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPTPTSAVIEFIKQRL 296


>gi|77459501|ref|YP_349008.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383504|gb|ABA75017.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 301

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 122/287 (42%), Gaps = 7/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F  +A+  +F+ AA  L L+ S++S  +  LE  +G++LF R  R + LTE G +L
Sbjct: 8   DLPIFLCIAQHLNFSRAAVDLGLTPSALSHSLRALENRLGVRLFNRTTRSVALTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +      +  ++    +L     KPSG LRI       + +L     EFL +YPDI++++
Sbjct: 68  YARLKPAFRDIDDALEDLNHFRDKPSGNLRITAGRQACELVLLPIASEFLKIYPDIRLEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +  +DI     D  +R    +++  +       +      AP + +    P   ++L
Sbjct: 128 VESDALLDIVASGFDAGVRFGNRLEADMVSMPIGPNLRSVVVGAPGFFERHPAPQKPEDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
                I            + W         E  I+  L +     ++   + G G+A + 
Sbjct: 188 HALPCIRHRFPSGSM---YRWEFERGGIEQEIEINGPLTLGDVSLMIGPALQGLGLAYVF 244

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + + +++     LV+++ D       ++  YP        LKAF +F
Sbjct: 245 ENMAREHLASGRLVQVLADWCPYYPGLHLYYPSRRHVPAPLKAFIDF 291


>gi|206562067|ref|YP_002232830.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038107|emb|CAR54055.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 322

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 124/292 (42%), Gaps = 5/292 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  +A +G+FT   ++L ++ + +SR ++ LE  +GI+L  R  R + LTE G +  
Sbjct: 1   MQAFVTLADAGTFTETGKRLGITTAHVSRLVASLEHRLGIRLLNRTTRSMCLTEAGERYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   ++ ++ E +++ V P G+LR   +  +  + +   + +F   YPD+ + L 
Sbjct: 61  ARARDITLAVDASEREARDARVHPHGRLRAHCSASIANHFVIPLIGQFQARYPDVSVDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L      +  D  D A+     + SS  +   +  I     A+P YL     P S   L 
Sbjct: 121 LAPHLPKLVRDSYDVAVIAMPSLPSSEQVAIDVGRIRSVLCASPAYLDAHGMPDSPGALV 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +    + P   E    L              +  +   S+      G+GI LLPD+
Sbjct: 181 HHRCVQL--VAPAYHERIWTLWNGAEAQTVDVDPSMTADVAASLAIAVREGAGIGLLPDF 238

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +     LVR++ D       V+  Y        K +A+ +F+    RD
Sbjct: 239 VAAADLRSGALVRVLSDYQAEEIGVFLVYASRQHLDAKTRAWVDFMKAALRD 290


>gi|218510637|ref|ZP_03508515.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 304

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 133/289 (46%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E+G +L  R  R L+ T+ 
Sbjct: 2   LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGARLLQRTTRSLSPTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +S+    +E   + L E+  +P+G +RI+  +  G + LQ  + + L  YP  
Sbjct: 62  GRLYYEESSQALRTIEGANLRLAEARAEPAGTIRISAPVGFGGHFLQDAIFDLLSTYPKS 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++  +  D A R    ++ S+LI RKL + H    A+P YL     P  
Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRTG-ILEDSTLIARKLGSTHRLLCASPDYLARRGAPDR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H+ +  G            L         P       N   ++M   + G GIA
Sbjct: 181 PADLARHDCVVAGQSTHAQW----LLEGPHGQETIPVSGRFAANEMQAVMAAAIAGYGIA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP  +      +  L R+++   TP   ++  YP +      +K F  
Sbjct: 237 RLPHGVANAYIRDGRLCRVLDGYTTPVGGLHVVYPSSRHLPPLVKTFIE 285


>gi|187939567|gb|ACD38713.1| LysR family transcriptional regulatory protein [Pseudomonas
           aeruginosa]
          Length = 309

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +G+F  AA QL +++S ++ +I  LE  +   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVAETGNFAKAAVQLGVTRSVVTHRIQQLEHFINAPLFHRSTRHVRLSEVGETYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +++     +   +++    KP+GKLR+        +     L EF  LYPDI++ +I
Sbjct: 67  KECADMVAGFNSLTEQMRNLRAKPTGKLRVQMLPGFAIDHFGPLLAEFTALYPDIEVDVI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++  D   +  D A ++  P Q+ +LI+RKL ++     A+P YL+    P    +L 
Sbjct: 127 VNDRLTDPIEEGFDIAFQMFPP-QAETLIERKLFSVRRLFLASPEYLQRHPAPERPADLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H +  +     +    F      D  +       ++ NS   +  Y + G+ +  LP  
Sbjct: 186 EHRIGLYEGYPSRNRWQFQ---HGDETVELSLAGQVRSNSVHLLRDYALAGTALVCLPTL 242

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +     ++  L+ ++ D    SF     +P   +   K+++  +F+  +  D
Sbjct: 243 VAHADLESGRLLPLLIDYPLSSFNFSAVFPATQRRALKVRSLIDFLVERISD 294


>gi|325921975|ref|ZP_08183780.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325547525|gb|EGD18574.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 338

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L EFL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPEFLTKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKH-NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H  + T  D   +  E       + R   +PR++      +  +      G GI
Sbjct: 188 PSELANHTTMSTSEDEAHQRWELHGPNGEMRRVDLQPRLAGF---DFPLLQSMARDGFGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP+ +      +  L  ++     P    +  +         ++ F +F+  
Sbjct: 245 TMLPETVCAQAVRSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 298


>gi|323497753|ref|ZP_08102768.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323317229|gb|EGA70225.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 293

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 141/292 (48%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D +RVF  V++ GSFT  A ++  SQSSIS++++ LE ++G  L +R +R + LT QG +
Sbjct: 5   DCIRVFVRVSQLGSFTQVANEMDTSQSSISKKMAWLEKQIGFTLLHRTSRQIMLTTQGQE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               +  +  +++  +  L+    + SG L++          L   + +F+ L+P + ++
Sbjct: 65  YLSYSQRLLDEMDAMESRLKLELNEVSGTLKLTCPSAFATQRLAKPVSKFMALHPSLSVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +++K I++     D AIR    +  SS   RK++   +  +A+  Y+    +P+S  E
Sbjct: 125 VSVEDKVINLHQADVDIAIRASH-LDDSSFKARKIMLHQICYFASSQYVATMGKPISPVE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIAL 243
           L  H  + +  + P  +   +         GEP    S    +S   ++Q   LG+GIA 
Sbjct: 184 LSDHRCLVYSLMTPSNVWLID---------GEPVRVNSVFSSDSPDMLVQMARLGTGIAA 234

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +P ++V +      LV +  D+      +Y  Y        +++AF +++  
Sbjct: 235 MPRWMVDNELKEETLVELFPDMEKTMLPMYAVYKSTEYLPYRIRAFIDYLVE 286


>gi|241554253|ref|YP_002979466.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863559|gb|ACS61221.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 297

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 140/292 (47%), Gaps = 7/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + ++L  F  V  +GSFT AAE+L ++++ +S+Q++ LE E+   L  R  R +  TE
Sbjct: 3   AVNLNRLAYFAAVVDTGSFTKAAERLAITKTVVSQQVARLEAELKTSLLLRTTRRVEPTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     ++ + E    E+  ++ +P+G LRIA   D G + +      F+  YP 
Sbjct: 63  AGKLLYARCVLIFREAEDAVDEITRANAEPTGMLRIAAPNDYGASTIAPIAASFIRKYPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +++L+L +  +D+  +  D +IR+   +  SS   R++ +      A+P +        
Sbjct: 123 CRVELLLADTKMDLLANQIDLSIRVGW-LDDSSHQARRIGSFRQFLVASPSFSATL-SLN 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++      I   +L  K    + ++              L  NS  +++   + G+GI
Sbjct: 181 SPEDAAGQPFI--ANLALKEPVTWRFIQGDFDRRTVRMQQSLMSNSTPAVLAATLAGAGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++LPD++  ++     L+R++ D   P+  +Y  YP A   T K+ AF   +
Sbjct: 239 SVLPDFLAGEHIDAGRLIRLLPDWSLPAGGIYVVYPAARFRTPKVTAFVAML 290


>gi|329295761|ref|ZP_08253097.1| transcriptional regulator [Plautia stali symbiont]
          Length = 305

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 122/295 (41%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  V   GSFT AA QL LS SSIS+ ++ LE E+ +K   R  R L LTE G 
Sbjct: 4   LKGMSIFAKVVELGSFTAAARQLQLSVSSISQIVARLEDELQVKRLNRSTRSLGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +      +L      P G LRI  +  + QN+L     E L  YP + +
Sbjct: 64  IYYQGCRRMLAETSQVHEQLYAFKNTPIGILRIGCSTAMAQNVLSAMTSEMLHEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  +  D  IR+ + +Q S+L  R+L  + M   AA  YL     P    
Sbjct: 124 NLMTGIPTPDLIANGLDVVIRVGE-LQDSNLFSRRLGAMPMVVCAAKSYLAQHGTPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E+D  + + +        E       V R   + R      N   +++++   G GIA +
Sbjct: 183 EIDNFSWLEYSVRPDNTFELVAPEGLVTRLTPQGR---FVTNDSQTLIRWLKAGCGIAYV 239

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P   V D  N   I        +    VY  Y E  K   K++   N++    R 
Sbjct: 240 PLMWVIDEINAGEIDILFPQYHSEPRPVYAVYTEKDKLPLKVQVCINYLTEYFRQ 294


>gi|307130795|ref|YP_003882811.1| LysR-family transcriptional regulator [Dickeya dadantii 3937]
 gi|306528324|gb|ADM98254.1| LysR-family transcriptional regulator [Dickeya dadantii 3937]
          Length = 302

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 126/287 (43%), Gaps = 9/287 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  +   GS T AA+ L +S++ ++R ++ +E     +L +R  R L+LT +G  + R
Sbjct: 8   QVFVAITEQGSLTGAAQALEMSRAMVTRYLAEMERWAEARLLHRSTRQLSLTSEGEAVLR 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    +  ++  +     PSG +R+  +  L Q  L   +  +L  YP   + L +
Sbjct: 68  HCRELIAVSQKLEMPSRGRKE-PSGLMRLTCSPSLAQTTLVAAITTYLRRYPKTAVDLQV 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +++  +  D AIR+   +  S LI R+L        AAP YL     P  +++L  
Sbjct: 127 ASQTLNLIEERIDLAIRITSQL-DSGLIARRLGGCPSVVCAAPSYLAEHGTPQRVEDLAV 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                    +  P       N  L +++  + G+G++L P Y 
Sbjct: 186 HNCLTYSFFGKSLWR----FTRKGEAVAIPVSGSFSANDSLMLLEAALNGAGVSLQPVYS 241

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V D   +  L+ +  +V      +Y  Y    +    L+A  +F+  
Sbjct: 242 VTDLIASKRLIALFPEVQPQELDIYAVYHSRERMPSALRALVDFLAE 288


>gi|104782298|ref|YP_608796.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95111285|emb|CAK16005.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 300

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 124/291 (42%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++++ F  V  +GSFT AA+ L +S++ +S+ I  LE  + + L  R  R + LTE G 
Sbjct: 10  LNRVQTFLAVVDAGSFTKAADTLGISKAMVSQHIKALEEALAVTLLLRSTRAIALTEAGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +E+    + +     +G+LRI+TT + G+  +   L  F   YP + +
Sbjct: 70  SFYDDFKVIVSDVESAFDNVMQRHNGVAGRLRISTTAEYGERFILPLLPAFAARYPALSL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               D+   D+  +  D  +RL   +  S+L  R L    +   A+P +L          
Sbjct: 130 SYETDSSLSDLIAERLDLVVRLG-TLPDSNLRSRTLGDYAIELVASPDFLGRH-ALGKPD 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     I   +L       +  LA     +    ++  Q N+   +    +   G+A+L
Sbjct: 188 DLAGVPWIANSNLHNPT--RWTLLAADGENVSVGGVAAYQSNAAQGVRAMALASLGVAVL 245

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P ++++ +    +L R++ D       +   YP       + + F +F+  
Sbjct: 246 PAWLIEQDLANGSLQRVLPDYSLAKQPISVVYPNGSHVPQRTRVFIDFLCE 296


>gi|254255017|ref|ZP_04948334.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124899662|gb|EAY71505.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 302

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 122/275 (44%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLDYARRILDQMDELGELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 87  GSAQQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L        AAP YL     P +  +L +HN I    GD      
Sbjct: 147 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGVPATPHDLTRHNCIGIRQGDEGYGIW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
              +                L  N     +++ + G GI +  ++ ++D   +  LV ++
Sbjct: 206 RLTSGRGAARHTEAVRIGGNLTTNDGEIAVKWALDGHGILMRAEWDIRDYLADGRLVVVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D  TPS  +Y  Y +  + + +++AF +F+  + 
Sbjct: 266 PDHETPSADIYAVYAQRHQMSARIRAFVDFLAGEL 300


>gi|330876172|gb|EGH10321.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 301

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 135/296 (45%), Gaps = 8/296 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M++ + D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++
Sbjct: 1   MNYPNLDDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNIGVVLLHRSTRQVSI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +++     +   ++    E+     +PSG LR+ ++  LG+  +   L E    Y
Sbjct: 61  TEDGERVYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGLGRRFVAPALSELAARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I+L + ++ +D+  +  D  IR+   I +  L  R L +      A+P Y++    
Sbjct: 121 PKLDIRLDIQDRLVDLIEEGVDLDIRVGNDI-APHLRARHLASNWRVLCASPAYVQQHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PLS+ EL  H+ +   +           L  +           L  N      Q+C+ G 
Sbjct: 180 PLSLAELANHDCLVIKERDRPFGIWH--LNGLQGAETVKVTGSLSTNHGEIARQWCLDGR 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+ L   + V+       L++++ +    +  ++  +   L ++ K++    F+  
Sbjct: 238 GVLLRSLWDVRTDLAEGRLIQVLPEYRQDA-DIWAVHTSPLMSSAKVRVTVEFLRE 292


>gi|229522420|ref|ZP_04411836.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
 gi|229340405|gb|EEO05411.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
          Length = 312

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 129/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+   +L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPIHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      + +++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALAAGKVEQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|238894091|ref|YP_002918825.1| hypothetical transcriptional activator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546407|dbj|BAH62758.1| hypothetical transcriptional activator [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 301

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 118/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   + E G
Sbjct: 3   DLNDFAWFVQVVDHGGFAAAGRALDQPKSKLSRRIAQLEERLGVRLIQRTTRQFAVAEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +  + E  Q  ++    +P G +RI   + L    +   L  F+  YP + 
Sbjct: 63  QTFYQHCKAMLIEAEAAQQAVETLRAEPRGSVRITCPVTLLHVHIGPMLARFMARYPGVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R +PI+ S L+ R L        A+P  +     P +
Sbjct: 123 LHLEATNRRVDVVGEGIDVAIRVRPRPIEDSDLVMRVLADRGHRLVASPDLISRLGRPQA 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     ++ G    K    +                 +     L++ +  + G G+ 
Sbjct: 183 PSELSAWPGLSLG--ANKHQHKWQLTGPGGARAEVYFTPRMVTTDMLALREAAMAGVGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V+D   +  L  ++++       ++  +         ++A  +++  +
Sbjct: 241 QLPLLMVRDQLASGELEVVLDEWQPRREVIHAVFASRRGLLPSVRALVDYLSEE 294


>gi|330815659|ref|YP_004359364.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327368052|gb|AEA59408.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 301

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 131/286 (45%), Gaps = 12/286 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F     +GSF+ AA  L L Q ++SR ++ LE  + ++L +R  R L+LT +G + +
Sbjct: 7   MSCFARAVETGSFSAAARDLGLGQPNVSRHVAALEAHLRVRLLHRSTRRLSLTPEGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++ ++  L++    PSG LR+A    L    +   +  FL  YP + ++L 
Sbjct: 67  AEVRRILDAVDESESSLRDELA-PSGSLRVACPTALAHAFVMPQVPAFLERYPGLSLELQ 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +++  + A+ AIR+   ++ S+L  R++        A+  YL     P +   L 
Sbjct: 126 IQDRYVNLLDEGAELAIRIGH-LEDSALRARRIGRFARVCVASRDYLARHGAPATPAALR 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+ I +  L  +    F       R         L+VNS  ++ +  + G GIA  P +
Sbjct: 185 EHDCIVYTLLASQAAWQF-------RDGEVAVSGRLRVNSPQAVQEAVLAGVGIAHGPRW 237

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +    +  L  ++++   P   ++  Y      + +   F +F+
Sbjct: 238 LFEAGLADGRLQLLLDEHAAPPVPIHLLYAANRLLSRRAIVFMDFV 283


>gi|254255380|ref|ZP_04948696.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124901117|gb|EAY71867.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 301

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 133/303 (43%), Gaps = 13/303 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LR F  VA++G F+ AA +L L+ SS+ R +  LE  +G  L  R  R +TL++
Sbjct: 1   MDKFSALRAFVEVAQAGGFSSAARRLDLAASSVVRAVDALEASLGTVLLNRTTRQVTLSD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     V  +L      + +   +PSG LR++  +  G   +  ++  F+  YP 
Sbjct: 61  AGAVYYARAKRVLEELADADALVADRGDEPSGPLRVSVPVAYGVRRIAPHIGAFVARYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+     D AIRL     ++ ++ R L T   +  A+  YL     P 
Sbjct: 121 LDIDLQLTDERVDLVASRIDVAIRLGDAAPTADVVARPLGTFSRYVVASRRYLDARGTPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + F     +    F   A             L+ N    + +  + G+GI
Sbjct: 181 TPGDLADHACLRFHFGGDQQAWTF---ADAHGQTQVIVAGPLKSNHSEVLREAALDGAGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFI--FL 292
           ALLPD+++    +   L R+ E       T    V   Y    + + ++ AF +F+    
Sbjct: 238 ALLPDWLIGGDVEAGRLHRLFERYDVTPGTARAVVTALYLPTQRGSKRVTAFVDFVESLA 297

Query: 293 KAR 295
            AR
Sbjct: 298 SAR 300


>gi|331014422|gb|EGH94478.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 301

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 133/296 (44%), Gaps = 8/296 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M++ + D L VF  +AR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++
Sbjct: 1   MNYPNLDDLNVFIHIARRSSFVGAANELGMSAAYVSKRVKLLEQNMGVVLLHRSTRQVSI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +++     +   ++    E+     +PSG LR+ ++  LG+  +   L E    Y
Sbjct: 61  TEDGERVYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGLGRRFVAPALSELAARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I+L + ++ +D+  +  D  IR+   I +  L  R L +      A+P Y++    
Sbjct: 121 PKLDIRLDIQDRLVDLIEEGVDLDIRVGNDI-APHLRARHLASNWRVLCASPAYVQQHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PLS+ EL  H+ +   +           L              L  N      Q+C+ G 
Sbjct: 180 PLSLAELANHDCLVIKERDRPFGIWH--LNGSQGAETVKVTGSLSTNHGEIARQWCLDGR 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+ L   + V+       LV ++ +    +  ++  +   L ++ K++    F+  
Sbjct: 238 GVLLRSLWDVRTDLAEGRLVPVLPEYRQDA-DIWAVHTSPLMSSAKVRVTVEFLRE 292


>gi|200390007|ref|ZP_03216618.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199602452|gb|EDZ00998.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 301

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  F   YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFWRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++  +    +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNH-SYDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|258624968|ref|ZP_05719894.1| putative transcriptional regulator [Vibrio mimicus VM603]
 gi|258582747|gb|EEW07570.1| putative transcriptional regulator [Vibrio mimicus VM603]
          Length = 309

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 139/302 (46%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F  +AR  SFT AA ++ ++++++S+ +  LE ++ ++L  R  R +
Sbjct: 1   MRIEPSLLSSLTWFAHIARHRSFTKAASEMGITRAALSQHLKALEQQLQVRLINRTTRNM 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L  +       +E    EL +S V+PSG +RI+ +    + L++ +L EFL 
Sbjct: 61  SLTEEGQRLLDILQPALMSIEQVVNELNDSHVEPSGLIRISVSRTAARLLIEPHLGEFLS 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I+++LI+D+   +I  +  D  IRL   +    +       +      AP Y K  
Sbjct: 121 RYPKIRLELIMDDGFSNIVAEGVDAGIRLGISLDEHMVAVPITPPLTTAIVGAPDYFKRN 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQY 234
             P + ++L+ HN + +       ++ ++  +        + EP+ + +  N   S++Q 
Sbjct: 181 GTPQNPEDLEAHNCLAYRFTSSGTIDHWSLTSPDIEKHTVVFEPKGNAV-FNDDHSMLQA 239

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G G+    D  V+ +     L R++          Y   P       K++   +F+ 
Sbjct: 240 AIQGVGLVKHIDLWVEKHINEGRLSRVLAPWCKSFPGFYLYIPSREHMPKKIRVLMDFLI 299

Query: 292 LK 293
            K
Sbjct: 300 EK 301


>gi|170701312|ref|ZP_02892276.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133762|gb|EDT02126.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 300

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 128/300 (42%), Gaps = 7/300 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ +R+F  V   GSFT A+ QL +  S +SR++  LE ++G++L YR  R +++TE 
Sbjct: 1   MDFESIRIFLRVVERGSFTAASVQLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEG 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     + +     P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYERCLRAEEILLDADRQARALRTDPEGTLRVLVPYSIGLFELEPALAEFHRRYPRV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  S  + R L   H    A+P YL+    P +
Sbjct: 121 QLVLIYDNSPLDLVEHGFDVALRAGM-LTDSGYVARSLGWSHAKLAASPAYLERVGRPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +H+++  G   P                  P    L  N  +++++    G GIA
Sbjct: 180 PHELAQHDILYVGRDAPGLT--LRLTNAAGDVADVPIRPVLISNESITVLRQAASGGGIA 237

Query: 243 LLPDYIVKDNP---NLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           L+  + +        L  ++ D   T    ++  YP       K++ F  F+      W+
Sbjct: 238 LISTHYIARRLEKNELEIVLPDWHRTDDVELHALYPRRATLDSKVRIFVEFLTEVFTGWR 297


>gi|116695673|ref|YP_841249.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530172|emb|CAJ96519.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 322

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F  VA+ G F+ AA QL ++ S ++R+I+ LE E+ + L  R+ R L LT 
Sbjct: 1   MDKFAAIQSFVAVAQRGGFSAAARQLGVTASILTRRIASLEQELRVPLLVRNTRKLALTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+   +E  + EL+ +   P G+L +   + + +  +   L EF+  YP 
Sbjct: 61  AGEAYFVRCREILSSMEEAEQELERACDDPVGRLHVQLPLIVARLHVVPRLSEFVEQYPG 120

Query: 122 IQIQLILDNKDI-DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I +++   +    D+     D A+     +  S L+ R L        A P YL     P
Sbjct: 121 INLKITQADGLQHDLIGRGLDIAV-WGGDLPDSRLVARPLTRNLRVTCATPEYLDRYGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++L  HN +T  DL            T +     P    L  ++  +  +  + G G
Sbjct: 180 ERIEDLASHNCLT-ADLFHGGRSWL--FQTPEGERLAPVKGNLAFDNSDNYREAVLAGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   P  +   +     L +++   +    T+Y  YP A     K+KAF  F+
Sbjct: 237 LGQGPSILFDVDVRVGRLEQVLTGYVARGQTLYAVYPPAQGRNAKVKAFVEFL 289


>gi|330816156|ref|YP_004359861.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327368549|gb|AEA59905.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 333

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 120/295 (40%), Gaps = 9/295 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSF  A E+L + +S++SR +  LE ++  +L  R  R   LT +G   +  
Sbjct: 32  AFLAVAAEGSFAKAGERLGIGRSAVSRNVQKLEAQLDARLLLRTTRCTQLTREGQLFYEH 91

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                 ++     E++E  S  P G LRI      G+ ++   L+ F   YP+I + L+L
Sbjct: 92  CRPGIEQIAQALDEMRELRSGPPRGALRIRAASGFGRRVVAPLLRGFRERYPEIALDLLL 151

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +   D +    D A R    ++ S LI R+L+ + +   A+P Y      P  + EL  
Sbjct: 152 HDGPPDFAAGRIDVAFR-DGILEDSQLIARRLMPMRLLVCASPAYASRHGLPRELVELTA 210

Query: 189 HNLITFGDLIPKCMED-FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I             F     V R + E R      N     MQ  + G G+A LP Y
Sbjct: 211 HRCIGLRGAAGSVEAWTFRVEGGVRRVVPEARHG---FNDPELAMQAALDGEGLAQLPAY 267

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +  +      L+  +          Y CYP       +++ F +++    R   F
Sbjct: 268 LACEALREGRLLACLGAFADEDRGHYLCYPSRKHLPTRIRVFVDYMSEATRALDF 322


>gi|323499798|ref|ZP_08104757.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315039|gb|EGA68091.1| LysR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 304

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 126/292 (43%), Gaps = 11/292 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V   VA++ SFT  AE+L +S+  ++R +   E  +G +L  R  R ++LT  G +L  
Sbjct: 8   KVLLDVAQTESFTATAERLDMSRPMVTRYVEAAENWLGSRLLQRTTRKVSLTSAGEQLLD 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  + +  +  L  +    +G +R++ ++  G + L   L++F   YP I+I +  
Sbjct: 68  ELQSWVDQAQQMEESLMPTKA-ITGFVRLSVSMSFGFSQLMPALEKFRQRYPAIKIDIDA 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  +  D AIR      + +LI R     +    A+P YL         Q+L  
Sbjct: 127 QDRAVDMVAERIDLAIRTTND-PNPALIGRPFSVCYSKLVASPDYLARSPSITQPQDLTH 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  + +     K      W         E  ++C +  N    ++   + G GI++ PDY
Sbjct: 186 HACLGY-----KNFGRHVWQLQQQNQHQEIEVNCDITANEATVLLHGSLAGLGISMQPDY 240

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  +      LV ++ +    +  +Y  YP     +  ++A  +F+     D
Sbjct: 241 LADEWIKRGKLVWLLPEWQLMTLQMYLLYPSRKHLSPPVRAMIDFLLDYFAD 292


>gi|293602967|ref|ZP_06685406.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292818761|gb|EFF77803.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 319

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 129/289 (44%), Gaps = 8/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +  +GS + AA QL  +Q ++SR++  LE  +G++L  R    + LTE G + +
Sbjct: 26  IETFVRIVEAGSLSAAAAQLGGTQPTVSRRLQLLERTMGVRLLQRSTHAIRLTEDGQRCY 85

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    ++ + E++ +  +P G LR+      GQ+     L  +L  YP+++++ +
Sbjct: 86  ERAKDLIATWQSFESEVRGAGDEPIGTLRVVAPHAFGQDQFVEPLACYLRKYPNMRVEWL 145

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D+  +  DCAIR+   +   S+I  KL  +     A+P  L+    P   +EL 
Sbjct: 146 LHDRMPDLIAENVDCAIRVGA-VTDPSVIAIKLGVVPRIVIASPELLQGAPVPQHPEELA 204

Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +   +         +   +      +R   +PR   L  +   ++ +  VLG G+ L   
Sbjct: 205 RLPWLALRTFYRTEVSLTHCATGGTERFGIQPR---LSTDGLQALRKAAVLGLGVGLGSA 261

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + ++++     LV +  +       V+  Y  +     +L+ F   +  
Sbjct: 262 WAMQEDLAAGRLVHVAPEWRADPLPVFLVYAPSRFQPARLRRFIEIMRE 310


>gi|91782814|ref|YP_558020.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686768|gb|ABE29968.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 297

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 123/292 (42%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++++RVF  +A   SFT A++ L + +++++  +  +E  +G +L  R  R + LT 
Sbjct: 1   MDRFEEMRVFVRIAERQSFTRASDDLQIPRATVTNLMKRMEQRLGARLLERTTRTVRLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   +E  +         P G LR+     L ++ +   L  FL  +P+
Sbjct: 61  DGEAYYRRCVRLIADMEEAEGSFSNL--APKGLLRVNLQGTLARHFVVPALPAFLARFPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IELTIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLAAYGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L  H  + +                  R +     S + V          + G GI
Sbjct: 178 DPSALSTHRAVNYVSSATGKAVPLE-FNVAGREVAMVLPSAVSVTGTELYTGSALSGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V        L  I+ D   P   V   YP+  + + +++ F  ++
Sbjct: 237 VQVPQYRVAAELAAGRLKIILADFPPPPMPVSVLYPQNRQLSSRVRVFAQWL 288


>gi|76811532|ref|YP_331949.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|126453831|ref|YP_001064639.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134279786|ref|ZP_01766498.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|217425661|ref|ZP_03457152.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226200325|ref|ZP_03795869.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237810539|ref|YP_002894990.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242315073|ref|ZP_04814089.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254260160|ref|ZP_04951214.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|76580985|gb|ABA50460.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|126227473|gb|ABN91013.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|134248986|gb|EBA49068.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|217391337|gb|EEC31368.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225927647|gb|EEH23690.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506216|gb|ACQ98534.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242138312|gb|EES24714.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254218849|gb|EET08233.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 362

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 49  MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 108

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   +  +   Y D+ +++ 
Sbjct: 109 ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYADVTVEIT 168

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +L
Sbjct: 169 LSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPATIADL 228

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ I      P        ++ V      P    + VN    +    + G+GIALL  
Sbjct: 229 QHHSFI---RREPNETLLDAAISEVAAASRVPMSGNVIVNHLEGLRVAVLGGAGIALLGT 285

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V ++     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 286 EVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFLADR 336


>gi|78049452|ref|YP_365627.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037882|emb|CAJ25627.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 307

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G F  AAE L +  +++S+ IS LE  +G+KL  R  R + ++ 
Sbjct: 1   MDHLQAIRAFARVVETGGFNRAAESLQMPNATLSKSISALEKHLGVKLLERSTRRVRVSN 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +  +L+  +  L  +   P G+LR+ T       LL   L EF   YPD
Sbjct: 61  DGAAYYARVRHLLTELDDVEATLGRAQGSPKGRLRVDTGGSTACGLLIPALPEFCARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+QL + ++ +D+  +  DCAIR        +LI RK+ ++     A+P YL     P 
Sbjct: 121 IQLQLGVTDRTVDVIGENIDCAIR--STADDGALISRKIGSLAWTTCASPDYLVRYGVPT 178

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             ++L      ++ +           ++L         P  S + VN   + +   + G 
Sbjct: 179 HPEQLKSLAFPVVGYFSAHSGKAPPLHFLDDGAPLEIVPNCSVM-VNESNAHLATGLAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+    D++V+   +   LV +++D       V+  Y  + + + K++ F  ++  
Sbjct: 238 GLIHTLDFMVRPAIERGALVPVLQDWRPAPLDVFIAYAPSRQLSTKVRVFIEWVSE 293


>gi|330901545|gb|EGH32964.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 293

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 125/288 (43%), Gaps = 11/288 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  +A S S + AA +L LS  +ISR+++ LE ++G++L +R  R ++LT +G       
Sbjct: 2   FAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSVSLTPEGEVFLPHA 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             + H  ET +  L+  +   SG LR+      GQ ++   L   +   P + I L L +
Sbjct: 62  KTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQENPALSIDLTLSD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             +DI+    D AIR+   I+ S+L+ R L        A+P YL     P  + EL +H 
Sbjct: 122 SIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCASPDYLARHGRPSILDELRQHP 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            IT   +                P+          NS  ++   C  G G+A+L  + V+
Sbjct: 181 CITLHAMPYWP------FIREGEPVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYWDVQ 234

Query: 251 DNPNLVRIM----EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                  ++    EDVI    +V    P   +   +++ F + +  + 
Sbjct: 235 QEIREGSLLQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLFVDRLEAEL 282


>gi|270263487|ref|ZP_06191756.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042371|gb|EFA15466.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 302

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 125/297 (42%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V     F  A   L + +S +SR+++ LE  +G +L  R  R  ++T
Sbjct: 1   MFTDLNDLFYFASVVDHQGFAPAGRALGIPKSKLSRRVALLEERLGARLIQRSTRRFSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  + +  Q  ++++  +P G +R++  + L    +   +  F+  YP
Sbjct: 61  EVGQNYYVHCKAMLVEADAAQQAIEQTRAEPCGTVRMSCPVALLHTRVGTMVAAFMADYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + + L   N+ +D+  +  D AIR+R  P++ S L+ + L     +  A+P  ++    
Sbjct: 121 KVTVHLEATNRRVDVVGEGLDLAIRVRPPPLEDSDLVLKILAQRIWYIAASPALVRTLGP 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               +ELDK+  +  G    +    +         +       L  +  L +    + G 
Sbjct: 181 VQRPEELDKYPTLDLGPA--RAQHQWQLTGPDGEKVEWEHRPRLVTDDMLMLRTAAIAGV 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  LP  +++DN     LV ++ D       V+  YP        ++   +++  +
Sbjct: 239 GIVQLPSMMMRDNMLRGELVPLLPDWQPQGGVVHAVYPSRRGLLPAVRLLLDYLSRQ 295


>gi|89075836|ref|ZP_01162220.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89048457|gb|EAR54033.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 313

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V  S SF+HAA+ L ++ S +SRQIS LE E+ ++L  R  R  +LT  G + 
Sbjct: 12  DIAAFVTVVESESFSHAAKNLGMTPSGVSRQISRLEKELQVQLIKRSTRSQSLTIAGQEA 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +  + +       +      G L IA+     + +LQ  L EF+  YP +Q+++
Sbjct: 72  YQYGKNILQQAQDVVNIASKQKQDIEGILTIASPKAFCRQVLQPLLLEFVDTYPKLQLKI 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +K ID      D   RL    Q+ +L+ ++L T  +   A+P+YL+    P   ++L
Sbjct: 132 QVTDKPIDPLYHDVDVVFRLTNEPQN-NLVAKQLATNDLVLCASPYYLEKKGTPTHPKQL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ I  G+        F    + D  +         VN     +   +   GIA+LP 
Sbjct: 191 AQHDCIYLGETNTDNQWRF---KSEDEELKVTVNGRYIVNHTEMRLDAALNHFGIAVLPV 247

Query: 247 YIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++ +    +  L  ++ D         TV+  Y   +    + + F +FI  K
Sbjct: 248 FVAQKALQSKALTAVLNDWRLLDNYQGTVFIQYLPNINMPYRQRVFIDFITEK 300


>gi|93006232|ref|YP_580669.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis
           K5]
 gi|92393910|gb|ABE75185.1| transcriptional regulator, LysR family [Psychrobacter
           cryohalolentis K5]
          Length = 299

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 134/286 (46%), Gaps = 4/286 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + VF  V   GSF+ +A +L ++ S++S+QI  LE E+G+ L +R  R L+LT
Sbjct: 1   MLDNLRGMAVFASVVGHGSFSGSARELGITTSAVSQQIRSLENELGVVLLHRSTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    +V    E  +I++ +   + +G LRIATT +LG N +   L  ++  + 
Sbjct: 61  EAGASFYEAAKDVVSAAEQGRIKVNQLRDELAGSLRIATTPELGVNHILPALSTWMSAHD 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I    DN  ID+  +  D AIR+   I  S++    L  +     A+P YL+  ++ 
Sbjct: 121 DLSITYFADNNYIDMIDERIDIAIRMSPNINDSTVSNHPLSDVRQMLVASPQYLRQHKKI 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L  H+LI    +      +     T  +       S +  N+    M     G G
Sbjct: 181 ETPKDLADHHLICIDIMKDTNNVELTQTET-GKKTRIKMTSRIHTNNVFMAMTIAKEGHG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           I  + +  VK   ++ NLV ++     PSF +Y       +   K+
Sbjct: 240 ILRMMEMDVKKELESGNLVEVLTGYQMPSFVLYAVTLNREQQPAKI 285


>gi|325529472|gb|EGD06383.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 324

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 132/299 (44%), Gaps = 11/299 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F  V  +GSF+  A+++H+S S+++R+++ +E  +G+ L +R    +TLTE G+
Sbjct: 13  LGAMRAFVRVVETGSFSAVAKEMHVSTSTVARRVTAIEEALGVPLLHRSTHSVTLTEAGN 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+
Sbjct: 73  IYLERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLVAPFLARYPTIQL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +   D+     D  I   +     +L+  +L        A P YL  C  P S  
Sbjct: 133 DVRLTDNHNDLVAGGFDLDIHEGENYLD-NLVVHRLSRNDSILCATPGYLDRCGRPASPD 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +  + P+    +  +    R    P    L  +    +++    G GIA  
Sbjct: 192 DLTQHNCLRY--VHPEGDPRWELVDGDARHSLLP-AGNLVTDHSELLLEATCAGLGIAEF 248

Query: 245 PDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             ++V+D   +  L  ++             +Y  Y    +++ KL+  ++F+  +  D
Sbjct: 249 EIWLVRDLLASGRLEAVLPRYRLHNKLTGEFIYIAYLANRRSSAKLRVLKDFLAEQLAD 307


>gi|205352645|ref|YP_002226446.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272426|emb|CAR37309.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627712|gb|EGE34055.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 301

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELVLCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++       +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNHF-YDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|160897555|ref|YP_001563137.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363139|gb|ABX34752.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 307

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 123/288 (42%), Gaps = 5/288 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F ++ARS S +  A +L ++  + S+++S +E  +G++L  R  R L LT++G   
Sbjct: 10  EMAFFCLLARSASLSATARELGITTPAASKRLSQMEARLGVQLVSRTTRRLGLTDEGQTY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +   +  +     +P G LRI  T+  G++ +   +  F+  +P IQ+QL
Sbjct: 70  LAHARRILDDIAAMEQAVAGMPGQPQGLLRINATLGFGRSHIAPLIASFVRRHPQIQVQL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L      +  D  D  IR  +P   + +I R+L        A+  YL     P + +EL
Sbjct: 130 QLSASPPPLVDDSFDLCIRFGEP-PDARVIARRLAPNRRLLCASAAYLARRGTPATPREL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ I                    R     R+   L  N     + + + G GI +  
Sbjct: 189 MQHDCIDIRQGDDTHGVWRFTHNGPGRKTEAIRLRDSLSTNDGEIAVGWALAGLGIVMRA 248

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ V     +  LV+++ D  T    ++  YP+    T +++ F   +
Sbjct: 249 EWDVARYLRSGRLVQVLADHATAPADIHVVYPQRHAATQRVQRFVEHL 296


>gi|254228102|ref|ZP_04921532.1| transcriptional regulator, LysR family [Vibrio sp. Ex25]
 gi|262395920|ref|YP_003287773.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151939598|gb|EDN58426.1| transcriptional regulator, LysR family [Vibrio sp. Ex25]
 gi|262339514|gb|ACY53308.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 311

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 129/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L LS ++++ ++  +E   G+KL  R  R ++LT+
Sbjct: 1   MDKFSDMTLFVSIVKHQGLAAAGRELGLSPATVTARLQAIEERYGVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+    +   ++ T+  LQ    +  G L+I+   D+G+ ++   +  F   YPD
Sbjct: 61  AGAMYHQACLNIIDSVKETENLLQTGISEVRGTLKISAPRDIGKQIISPMVSAFSEQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  S+LI RKL +      A+P YL     P 
Sbjct: 121 VTPYLYLNDNLSNLAESGLDLVIRYGE-LADSNLISRKLASSQRVLCASPDYLAKQGVPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
             Q+L  H  +    ++    E   W    +       ++  +  +    I Q+ + G+G
Sbjct: 180 CPQDLVDHRSLA---MVRSNEELKTWHFKDEESHQTITVTPKRFSDDGEVIRQWALDGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDV--------ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     ++ +     LV +++                ++  Y        +++ F +F
Sbjct: 237 IALKSILDIQQDLKQQRLVTVLDGYMKNFSAFSQGAEADLHVIYQSRQYQPKRVRLFLDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LVEQ 300


>gi|332289113|ref|YP_004419965.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
 gi|330432009|gb|AEC17068.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
          Length = 295

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 135/292 (46%), Gaps = 4/292 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++LR F +VA++GSFT AA +L +S S++S  +  LE ++ IKLF+R  R +  T
Sbjct: 1   MIDNMNELRSFIIVAQTGSFTKAAGRLGVSTSALSHSMRKLEEQLKIKLFHRTTRSVATT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L +    ++  +E     L       +G LRI     +   ++   L  F+  YP
Sbjct: 61  EAGEQLFKQLFPLFESIEDNVNALSHFRNTLNGTLRINGADHVFLYVIWDKLLRFMEKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++LI D K  DI     D  IRL K +    +  R    + M   A P YL+    P
Sbjct: 121 EVKLELISDMKFTDIVAGRFDAGIRLGKEVDKDMIAIRISDDMQMALIATPQYLEQYGIP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
            +I +L  H  +       + +  + +     + + +        VN+     + C+   
Sbjct: 181 KTIDDLTSHQCLCVRMPTSEGIFPWEFCMPKGKEVVKFMPSGRFVVNNNFLAKKACLSHL 240

Query: 240 GIALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+AL+P D ++K+  +  +V ++++        Y  YP   +++   KA   
Sbjct: 241 GLALMPKDRVLKELKSGEIVEVLQNYAMRYEGYYLYYPNRRQDSPLFKALVE 292


>gi|148975061|ref|ZP_01812041.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965570|gb|EDK30819.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 310

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G  +
Sbjct: 12  DLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEKALSVKLFERTTRTLIITQAGQLV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +PSG L +A       ++LQ  +  FL  YP+IQ++L
Sbjct: 72  YDQSVVMINAAQQAVELSTSDHTEPSGSLTVAAPEAFLNSVLQPFVVPFLNQYPEIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DIDI     D A RL       SL+ ++L   ++   A+P YL +   P    +L
Sbjct: 132 RAADGDIDILRQGIDIAFRLTDK-PDESLVLKELGKTNLVLCASPDYLSHKGTPSHPTDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +   +     + DF      D            VN     ++    G GI +  D
Sbjct: 191 SQHDCLYLAETDKDHIWDF---LKDDEFHTVSVSGRYAVNHSQMRLKGVKEGLGIGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++++D     ++V+++ D    S     +   + +      +L+ F ++   
Sbjct: 248 FVIQDALAEGSVVQVLNDWTIKSNYHGAIAMQFAQTKYMPARLRVFIDYAME 299


>gi|120613089|ref|YP_972767.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120591553|gb|ABM34993.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 302

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 122/301 (40%), Gaps = 7/301 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M F +   LRV    AR GS T AA  L ++ ++ S  +  LE +VG++LF R  R L +
Sbjct: 1   MKFENLSDLRVLVEAARGGSLTAAARALDVTPAAASAMLKRLEAQVGVRLFERSTRALRI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T QG  L          L+      Q  +    G +R+A   DL   +L   L  F+  +
Sbjct: 61  TAQGGTLLEYAERALELLDEGAGLAQSETGALRGTVRLAAPTDL-SRVLLPRLDRFMERH 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +Q+ L   ++  D+  D  D A+R    +  S L+ R L      A AAP YL     
Sbjct: 120 PGVQLALSASDRLHDVRRDAVDLALRYSAELPDSQLVARALHHTRRIACAAPEYLARHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVL 237
           P    EL  H  I       + +      A    P  +G    +   V+       + + 
Sbjct: 180 PRHPSELATHRCIAMAIAGRREVRWTFERAPGHPPETVGITLRADRSVDDGALAHAWALA 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GI       V+   D+  LV ++   +  ++TVY   P       +++A   F+  + 
Sbjct: 240 GGGIVYKSRLDVQAHLDSGQLVELLPGWLGQAYTVYAVLPSQRFVPARVRALVEFLAEEW 299

Query: 295 R 295
           R
Sbjct: 300 R 300


>gi|90409204|ref|ZP_01217316.1| transcriptional regulator [Psychromonas sp. CNPT3]
 gi|90309692|gb|EAS37865.1| transcriptional regulator [Psychromonas sp. CNPT3]
          Length = 294

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 121/292 (41%), Gaps = 12/292 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  VA +GSF  AAE+++ S S IS++I  LE  VG +L  R  R + LTE
Sbjct: 1   MDTLRSMALFVKVAETGSFKQAAEEMNYSNSLISKEIGKLEQMVGARLLQRSTRKIHLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++    +     +QE   +P G+L+I   + LG   L      F  L+P+
Sbjct: 61  IGLGYLERCRKILSADQEAHDYVQEMQGQPKGRLKINAPMTLGITDLSLAFAAFTELHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L ++ +D+     D   R+       + + + + +  +H    P YL+N     
Sbjct: 121 VELDVDLSDEPVDLIAQGYDIGFRVSSTFIDVNYVGKPIASFSLHLVTTPKYLQNHGPIE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +HN   +     K               G      L+ N+ + +    + G+ I
Sbjct: 181 CPEQLSEHNFYLYSLANSKNKLPIG--------GGITVKGNLKANNTIFLRDALLQGNAI 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P ++      +  LV ++ D   P    Y  YP       KL  F  F+
Sbjct: 233 GLFPSFVCAKEIKSGLLVELLVDYPLPKLNFYVLYPSRHYTPPKLAKFVEFM 284


>gi|91790593|ref|YP_551545.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699818|gb|ABE46647.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 298

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 131/292 (44%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +++F  +   GSFT AA+ L L +++++  +  LE  +G +L +R  R ++ T+
Sbjct: 1   MDRFHSMQLFTRIVELGSFTKAADDLQLPRATVTHAVQQLEKRLGARLLHRTTRHVSPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   LE  +        KP GKLR+     L ++ L   + +F   YPD
Sbjct: 61  DGAAYYERCLRLLTDLEEAESAFVNVGSKPRGKLRVDLHGTLAKHFLLPVIGQFFERYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R+ + +  SS++ R++  +     A+  YL     P 
Sbjct: 121 IELEIGMGDRLVDLVREGVDCVLRVGE-LTESSMVGRRVALLEQVTCASREYLARHGTPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++ L  H  + F          F++L        + +   + V    +    C    G+
Sbjct: 180 TVEALRGHRAVNFLSTRTGKPLPFDFLVEGAERQLQLK-GSVAVTDADAYAACCAAHLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V        LV ++         V   YP + + + +++ F +++
Sbjct: 239 IQVPRYHVAARLKEGTLVEVLPAFRPAPMPVSVLYPHSRQLSPRVRVFVDWV 290


>gi|86159924|ref|YP_466709.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776435|gb|ABC83272.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 319

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 139/297 (46%), Gaps = 11/297 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  G F+ AA  L  + S++++ ++ LE  +G +L  R  R + LT +G   
Sbjct: 11  EMEAFATVAELGGFSAAARALGRTPSALNKLVTRLEARLGARLLTRTTRAVRLTAEGEAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           HR    +  ++E  ++E   +   P G++R+   +  G + L   +  FL   P I + +
Sbjct: 71  HRRAMRILAEVEDAEVE--AAGGAPRGRVRVNANLPFGVHCLLPRVPAFLQANPGITLDV 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +D+    AD AIR+  P+++S L+ RKL    +   A+P YL     P +  +L
Sbjct: 129 VLSDEVVDLVERRADVAIRVG-PLRASRLLARKLGESPVAVVASPAYLARRGTPRTPADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D H  I F     + ++D+ +L      +  P    ++     +  Q  + G+G+A L  
Sbjct: 188 DAHERIGF--TFARALDDWPFLRG-GEALRVPVRGAVRAGDGETARQLALAGAGLARLAL 244

Query: 247 YIVKDN---PNLVRIMEDVITPS-FTVYFCYP-EALKNTGKLKAFRNFIFLKARDWK 298
           + V  +     LVR++E         ++  +   A     +++AF +F+    R  +
Sbjct: 245 FQVAADLEAGRLVRVLEAFEPGDVLEIHALFLGPAGSVPARVRAFVDFVAATLRRGR 301


>gi|270265322|ref|ZP_06193583.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270040726|gb|EFA13829.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 299

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 134/293 (45%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S+ +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGNISAAARKLEITPPSVSKALKLLEQHIGHPLFVRTTRRIELTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T      LET+   +++ + +PSG +RI  +      +L+  +  F   YP I++
Sbjct: 66  QLLEQTVAAVDSLETSLENIRDQNQEPSGLVRITLSRFAYLLILKPAMAAFCRQYPGIKL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           ++ + +  ++I  +  D  IR    ++   ++ R+L+       YA+  YL+    P + 
Sbjct: 126 EVSVYDGTVNIIDERFDLGIRFGDILE-GGVVARQLMKPFREGLYASSAYLEAFGTPTTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +HNLI +  +    +     L      +       L  N    +      G GI  
Sbjct: 185 AELHQHNLIGYRFITNNRILPL-ILDHKGEQLTVEMPGQLISNDIEVMADGIRNGLGIGR 243

Query: 244 LPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L +    ++ D    + +ME+       VY  YP+    T ++K   +F+  +
Sbjct: 244 LFEPIHSLLPDKERFIPVMENYWKTYPAVYLYYPKNAGKTKRVKTLIDFLIER 296


>gi|115352583|ref|YP_774422.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282571|gb|ABI88088.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 309

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT 
Sbjct: 1   MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  + +      +       G+L +     + + ++   L      +P 
Sbjct: 61  DGALLLERGRRLLAEADELDRLFRRRDRDVVGRLNVDAPSRIARRVIAPALPSLFRRHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P 
Sbjct: 121 LQLSLGSTDRTIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFVLINCASPDYLRECGVPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               L   H  I +    P    +  W    D       + S + VN+  + +  C+ G 
Sbjct: 180 HPDALAHGHWAIGYAS--PTTGRELGWEYCADGGQHTLTLPSRVIVNNAETYIASCIAGM 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +P + V    D+  LV +M         V   YP     + +L AF  +
Sbjct: 238 GLIQIPRFDVAHLLDSGALVEVMPGHRAAPMDVSAVYPHRRHRSRRLNAFIEW 290


>gi|86358410|ref|YP_470302.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282512|gb|ABC91575.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 300

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 138/294 (46%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G F+ AA    ++ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERGGFSAAATARRMTPSAVSKLVARLEARLGARLVNRSTRKLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +   +   + +   S  + SG++RI T+   G ++L   +  F+ L+  + + +
Sbjct: 71  YERSIAILADIAEAERQ-ASSGEQASGRIRINTSGSFGNHVLAPLVPAFMALHSAVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  + AD AIR   P+++SSLI RKL        A+P Y+    EP S+ +L
Sbjct: 130 THTDRIVDLMEERADVAIRTG-PLKNSSLIARKLGATGKLIVASPDYISRHGEPRSVADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I F     + +E +  L      +  P    +QV    ++    + G+G+A L  
Sbjct: 189 SRHCRIGFS--YARAVEGWP-LREDGETVTVPITPGVQVGDGEAMRHLALSGAGLARLAA 245

Query: 247 YIVK---DNPNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V+   D  +LV ++E          Y  Y  +     G+++A  +F+    R
Sbjct: 246 FTVRADIDAGHLVPVLEAANPGDIEEFYAVYMGQGGPLPGRVRALLDFLVKHVR 299


>gi|148975138|ref|ZP_01812062.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965062|gb|EDK30312.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 298

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 131/299 (43%), Gaps = 14/299 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA   SFT AAE L +S+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFVEVANCASFTQAAEHLDMSRLQVSRHVQEIEGWLKQRLLHRTTRKVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++ H+    ++     +   SG +RIA  I L Q++L   +++F   +P+
Sbjct: 61  AGEVALQRCEKILHETAELEVTSLNQTDDLSGTIRIAAPIGLTQHMLLDVVEQFTERHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L   ++   +  +  D A+R        SLI RKL+ I     A+  YL    EP 
Sbjct: 121 ITVELFASDRFTQLVDERIDIALRYTDQ-PDDSLIARKLMVIDSVVCASQAYLDKHGEPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++ L +HN   F  L     +        ++         ++ N    + +    G G+
Sbjct: 180 TVEALRQHNC--FRHLNVSKWD----FVKDNQHYSVEVSGTIKANDVGVLTRAAQHGKGV 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             LP  +      N  L+RI++D ++PS  ++  Y         ++ F +F    A  W
Sbjct: 234 VRLPCDLANPLIANGQLIRILDDFVSPSSVLWAVYLSRSYQLPIVRQFIDF---AAEAW 289


>gi|295680999|ref|YP_003609573.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440894|gb|ADG20062.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 309

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 128/289 (44%), Gaps = 9/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA + SF  AA QL ++ S I+ +I  LE  V   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVAETSSFAEAARQLGVTSSVITTRIQQLEKFVNAPLFHRSTRVVRLSEVGEAFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +EV  ++     +++E    P+G+LRI              L EF   YP IQ+ +I
Sbjct: 67  RECAEVVGRVNELTDQMRELRATPTGRLRIQMLPGFALGHFGAPLAEFNRRYPGIQLDVI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ +D   +  D A ++  PI + SLI+R+L  +     A P Y+K    P   ++L 
Sbjct: 127 VNDRVVDPIEEGFDVAFQIFPPI-AESLIERRLFKVRRLFCATPAYVKEHGAPQHPRDLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPD 246
           +H    +     +      W  T    + E  +  + + NS   +  Y + G G+  LP 
Sbjct: 186 QHTTALYSGYPSRN----RWTMTHGDEVVEMELPGMIRSNSVHLLRDYALTGGGVVCLPT 241

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +      + +LV I+ D           YP   +   K+KA   F+  
Sbjct: 242 LVASAALLDGSLVPILTDYTLSPLNFAAVYPATQRQALKVKALVEFLAE 290


>gi|254693142|ref|ZP_05154970.1| Transcriptional regulator, LysR family protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 304

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 133/300 (44%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LRVF  V   G+ + A      S +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   Y 
Sbjct: 60  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYS 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L+L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 120 DIEVRLLLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S + L  D+H+ +      P   E +  L T +             +    + Q+ + G
Sbjct: 179 QSPEALLSDRHHCLLL--RFPGSKEYYWLLQTPEGLRKFEVTGPYGSDDGDVLTQWALGG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P + VK+   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 237 RGIINKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 296


>gi|251789634|ref|YP_003004355.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538255|gb|ACT06876.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 305

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 131/300 (43%), Gaps = 8/300 (2%)

Query: 1   MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+   +D +R F + A+  SFT AA  L ++ S++ + +S LE  +GIKL +R  R L L
Sbjct: 1   MNPLSFDGIREFTLAAQLQSFTAAALVLGVTSSAVGKSVSRLEQRLGIKLLHRTTRKLVL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G         +  +L   +  +   +  P G+LR+      G+  +   L +F   +
Sbjct: 61  THEGEIYLSSCLRIIDELRDIESNMSTGASSPKGRLRVDLPAAFGRRHIAPMLIDFAKPF 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
             + + +    + ID+  +  D A+R+        L+ RKL    +   A+P YL N   
Sbjct: 121 SQLDLTVTFSERTIDMVGEGVDLAVRIGDLHNDPELVARKLGAQELVICASPDYLSNAPP 180

Query: 180 PLSIQELDKHNL-ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             +  +L +H+  I +   +       N    +++     R    ++     ++Q  + G
Sbjct: 181 VTNKDDLLQHDCIIGWRKGLRAAWLLNNAKGELEQQQIRVRH---ELGDGEMMLQATLNG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G++ LP +++ ++     LV ++++       ++  +P       K++   + +   A+
Sbjct: 238 CGLSQLPTWLIAEHLQSGALVTVLDNYAGAKMPIHVIWPRTRYIQPKVRMTVDALLQMAQ 297


>gi|241764319|ref|ZP_04762348.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241366333|gb|EER60870.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 297

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 10/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR  SFT AA QL +SQS++S  I   ET++G++L  R  R ++ T+ G
Sbjct: 5   NYNDLTAFITVARERSFTRAASQLGVSQSALSHSIRAFETKLGVRLLTRTTRSVSPTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +    ++E     ++E   KP+G +R+ T     + +L   L+  L  +PD +
Sbjct: 65  ERLLRSVAPQLDEIEAEVATIRELQDKPAGLVRVTTAEHAAETILWPKLEHVLPAHPDFR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    DI  D  D  IRL   +       R    I M    +P Y +    P S 
Sbjct: 125 VEVCIDYGLTDIVADRFDAGIRLGHQVAKGMTAVRISPDISMAVVGSPSYFERHARPRSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L +HN I      P     + W    D      R+   L +N+   I+   + G G+ 
Sbjct: 185 HDLTQHNCINL--RFPTSGGLYAWELEKDGSKLNVRVDGQLVLNNLSQILGATLAGLGLC 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +P+ I +   +   L ++++         +  YP    ++  L     F+  
Sbjct: 243 FIPEDIARPHIETGRLKQVLKTWCPKFPGYHLYYPSRRHSSRALS----FLVE 291


>gi|260778117|ref|ZP_05887010.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606130|gb|EEX32415.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 311

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 140/300 (46%), Gaps = 10/300 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  SGSF+  A++L +S SS+SR I+ LE+ +  +L  R  R + L+  G 
Sbjct: 10  LSEMAIFVSVVESGSFSKTAQKLGVSPSSVSRSITRLESALQERLLERTTRKMRLSTTGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++ + +++ +  +      Q      SG LR+A    L + +L   + +F+  YP+I +
Sbjct: 70  EVYSLCNDMMNSAKMAISAAQADKTNVSGALRVAAPKALSRQVLMPMILDFIDYYPNISL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL   +  ID   D  D  I +     +  LI ++L    +   A+P Y++    P   +
Sbjct: 130 QLKAADHYIDPIGDEVDILIHITDN-PTEGLIAKQLSQCRLIMCASPSYIEKHGMPTHPK 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++ +HN +  G+     + DF      ++ +    I    VN      +  + G GI++ 
Sbjct: 189 DISEHNCLCLGENPKDRIWDFT---NNNKKLSINVIGSFAVNHSEIRREAVLRGVGISVF 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P+++++   D+ ++V +++D          +   Y ++     ++K F  ++  +  + +
Sbjct: 246 PEFVIQPYIDSGDVVEVLKDWHVGGNYQGKIIAQYAQSKYIPSQIKTFIEYLQSRFNEQQ 305


>gi|206562563|ref|YP_002233326.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038603|emb|CAR54562.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 317

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 126/296 (42%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLAIFVAVVEAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    E     +   +    G LR++  ID G  ++   +      +P 
Sbjct: 66  AGRVFYDACRDIVRATEAALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAVVALRDRHPG 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+ +++ ID+  D  D A+R+ + +  S+    +L T      A+P ++     P 
Sbjct: 126 LDVELVANDRVIDLVADNLDVAVRIGR-LADSNYRAVQLGTYEKWLVASPAFVARHGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +    L      D +             ++ +  N+  +     + G G 
Sbjct: 185 DPDALAALPFVMLSSLPRPHTLDLD--DARGGHASVRCVAPVVSNTATACRAIVLAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LL D+   D+     LVR++    T    ++  YP     + K++AF + +  + 
Sbjct: 243 GLLTDFSTADDVAAGRLVRLLPGWRTAPAGIHAVYPSTRLPSPKVRAFIDAMKARL 298


>gi|194365944|ref|YP_002028554.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348748|gb|ACF51871.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 297

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +R F  +    SFT A+E L L +++++  I  LE  +G++L +R  R +  T 
Sbjct: 1   MDRFTAMRAFVRIVERRSFTRASEDLGLPRATVTDAIKALENRLGVRLLHRTTRLVVPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +     +   ++  +   ++  V P G LRI     LG++LL  +L +FL  YP+
Sbjct: 61  EGEAFYGRCLRLIADMDDAEAAFRD--VPPRGPLRIEVHGTLGRHLLFPHLPDFLQRYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++   ++ +D+  +  D A+R+   +  S L  R+L  +     A+P Y++    P 
Sbjct: 119 IELEVNEGDRYVDLLREGVDAAMRVG-TLADSDLAARRLTMLREVTVASPSYVQARGVPG 177

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           SI  L D H ++ +       +    +  T  +    P  + ++V+   + +   + G G
Sbjct: 178 SIDALQDGHQMVGYRSSATGQLIPLEFQQT-GQIRYVPLPARVRVSGADAFLGAALAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I   P Y +        LV ++ D       +   YP     + +L+ F +++  
Sbjct: 237 IIQAPRYRMNPYIARGQLVELLPDAPPTPSPLSLVYPRNRTPSPRLRVFIDWVAA 291


>gi|116252690|ref|YP_768528.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257338|emb|CAK08433.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 299

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 134/282 (47%), Gaps = 8/282 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GSFT AA  L + ++++SR+I+ LE E+G++L  R  R L+LT  G   +  
Sbjct: 2   IFARVTEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSLTASGRLYYEE 61

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +S+    +E   + L E+  +P+G +RI+  +  G + LQ  + EFL  YP  +++L L 
Sbjct: 62  SSQALRTIEDANLRLAETRAEPAGTIRISAPVGFGGHFLQDAIFEFLSTYPKTRVELRLT 121

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +++  +  D A R    ++ S+LI RKL + H    A+P YL  C  P   ++L  H
Sbjct: 122 DDRLNLVENGIDLAFRTG-ILEDSTLIARKLGSTHRLLCASPDYLVRCGSPDVPEDLAHH 180

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + +  G            L                 N   ++M   + G GIA LP  I 
Sbjct: 181 DCVIAGQSAHAQW----LLEGPQGQETIAVSGRFAANEMQAVMAAAIAGHGIAQLPHGIA 236

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
                +  L R+++   TP+  ++  YP +      +KAF  
Sbjct: 237 DACIKDGRLRRVLDGYTTPAGGLHVVYPSSRHLPPLVKAFIE 278


>gi|330820804|ref|YP_004349666.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327372799|gb|AEA64154.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 307

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 130/292 (44%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L +F +V R GS + AA +L ++  S+S+++  +E  +G++L  R  R +++T 
Sbjct: 1   MDAISDLALFELVVRQGSLSAAARELGVTPPSVSKRLKQIELRLGVRLLNRTTRQISVTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G       S +  +L   +  +  S   P+G LR+  +   G+  +   + EF+  +P 
Sbjct: 61  EGELYLNNGSRILAELAELEQLVSRSRAAPAGLLRVNASFGFGRTWVAAAISEFVARHPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++IQL L ++ + +     D  IR    +  + +  R+L+       AAP YL     P 
Sbjct: 121 MEIQLQLTDRPLSLQEQAFDVGIRFGD-VPEARINARRLLRNRRIVCAAPAYLARHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +EL +H  +   +                +         L  N   +++++ + G G+
Sbjct: 180 TPRELAQHPCLVLRENDSAYGSWH--FTRGSQEETVKVRGPLSSNDGAAVLKWALDGHGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +   + +       +L+ ++ D   P+  +Y  Y E  + + +L+ F +F+
Sbjct: 238 TIRSQWEIDALLREGSLMPLLADWSLPNADIYAVYLERNQLSARLRTFIDFL 289


>gi|304412065|ref|ZP_07393675.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307305960|ref|ZP_07585706.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304349615|gb|EFM14023.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306911453|gb|EFN41879.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 306

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 134/300 (44%), Gaps = 11/300 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA+ GS+T AA+ L ++ S++S+ I  LET +G KL +R  R ++LT  G   
Sbjct: 8   EIRHFVTVAQLGSYTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        L+  Q  L      PSG++R+   +  G+  +   L      YP +++ +
Sbjct: 68  LKDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLSLSQKYPKLELSI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++  D+  D  D A+R+ +   +  L+ R+L        A+P Y      P    +L
Sbjct: 128 TFNDRAADLFNDGIDLAVRVGQLGDTVDLVARRLGEQRRVICASPAYFARFGTPKDKADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVLGSGIALL 244
           ++H  I    +     +   WL   +  I E        ++    +I+   + G G+A +
Sbjct: 188 NQHQCI----VGWPLGQQHRWLLKNEDGIIEAYDIPVRHEIADCEAILAATLAGVGLAQV 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKARDWKF 299
           P ++V+D      L+ +++++ +    ++  + +      KL+     +    KA   +F
Sbjct: 244 PIWLVEDYLKTGELISVLDELASDDTPIHLIWLKTPYLQPKLRVIIEELVDLAKAPKSRF 303


>gi|113969435|ref|YP_733228.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113884119|gb|ABI38171.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 307

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 124/303 (40%), Gaps = 15/303 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +  +VF  +   GS   AAE L +S+S ++R ++ +E   G +L +R  R L+LT+
Sbjct: 1   MDRLEAAKVFVTIVERGSMIGAAEALDMSRSMVTRYLAEMEEWSGARLLHRSTRRLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +    +         S +P G LRI+ +  +   LL   ++ +L  YP 
Sbjct: 61  AGEQVLDYCQRLLELAQEVPAVSHAQSAQPRGLLRISCSQFMAHLLLPSVVRPYLAQYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             +   + ++ +D+  +  D AIR+   +   +LI R+L        AAP YL       
Sbjct: 121 ASVNFHVTSQTVDLVAERIDLAIRITNEL-DPTLIARRLGECESVVCAAPSYLACHSAIT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW---------LATVDRPIGEPRISCLQVNSYLSIM 232
             + L +HN +T+       M  F              V +    P    L  N  + ++
Sbjct: 180 HPENLTRHNCLTYS-YFGDVMWRFTQTPIAAKATSTQEVGQIFNIPVKGNLSANDSMVVL 238

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + G GIA+ P +  K   D+  LV ++ +    S  VY  Y         L+   + 
Sbjct: 239 NATLAGEGIAMQPLWAAKPHLDSGALVPLLREYKPQSLGVYGVYQSRKHMQPALRVMMDM 298

Query: 290 IFL 292
           +  
Sbjct: 299 LVQ 301


>gi|261212934|ref|ZP_05927218.1| transcriptional regulator LysR family [Vibrio sp. RC341]
 gi|260837999|gb|EEX64676.1| transcriptional regulator LysR family [Vibrio sp. RC341]
          Length = 312

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+    L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPIHPTNL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALAAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|238028095|ref|YP_002912326.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237877289|gb|ACR29622.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 327

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 131/301 (43%), Gaps = 9/301 (2%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MNLDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + L Q ++   L EFL 
Sbjct: 61  ALTEAGQLFYQHCQAMLAEAQAAMNAVQQLRASPRGTVRVSVPVTLSQTMMSRLLPEFLH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            +P++++ + + N+ ID+  D  D A+R+R +P ++++++ R L         +P  L  
Sbjct: 121 RFPEVRVLVRVTNQVIDLFEDSIDVALRVRSEPPENANIVVRPLWRTEQMLVGSPSLLSQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL+  +L +    T           F  +A             L     ++I +  +
Sbjct: 181 NAPPLAPGDLGRFE--TLDTPSGDGRHVFTLIAPDGTRHQHEHEPRLVTADLMTIREAVL 238

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA LP+ +         L  +M     P   +Y  +         +++F +F+  K
Sbjct: 239 DGVGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRSFVDFLVEK 298

Query: 294 A 294
            
Sbjct: 299 L 299


>gi|167573031|ref|ZP_02365905.1| Transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 302

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 123/289 (42%), Gaps = 9/289 (3%)

Query: 12  YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTS 71
            VVA   SF  AA  L +S S++S  +  LE  + ++LF R  R + LTE G +  R   
Sbjct: 16  IVVADQRSFRAAARTLGVSPSALSHAMRNLEARLDVRLFNRTTRSVALTEAGEQFLRRVR 75

Query: 72  EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK 131
                LE    E   +  +PSG +RI+ + +  + L++  L  F+  YPDI ++ ++D +
Sbjct: 76  PAIADLEDAVNEAAAAHNRPSGSIRISASENAARPLIRHVLPGFVAAYPDIHVEFVVDTR 135

Query: 132 DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL 191
            +DI  +  D  IR+ + +    +  R    +   A A+P YL +   P +  +L +H  
Sbjct: 136 LVDIVANGFDAGIRVLEDVPRDMIAIRFGPDMRFAAVASPAYLAHHAPPQAPHDLMRHRC 195

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
           I F             L    +         L + +   ++   + G GIA +P+++  +
Sbjct: 196 IRFRFESGTLYRWD--LEHRGKTASIDVDGPLTLGNLNLMVDAALEGIGIAWVPEHLAAE 253

Query: 252 N---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +     LV ++ +       +   YP        L+ F        RDW
Sbjct: 254 HLALGRLVHLLPEWSPSFPGLCLYYPANRHPPTALRLF----AQAVRDW 298


>gi|167625800|ref|YP_001676094.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167355822|gb|ABZ78435.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 304

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 132/298 (44%), Gaps = 8/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LR+F  VA  GS T AA +L +S +  S  +  LE E+G  LF R  R L LT+ 
Sbjct: 1   MQLNDLRLFVRVADCGSLTSAAVELDISSAVASAGLKRLEKELGTTLFIRSTRSLRLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           LE  Q  ++ +    SG + ++   D+G+N+L   L  FLL YP++
Sbjct: 61  GERYLIHCRRALSDLEVGQRAIESTQASISGLVSLSVPSDVGRNVLLPWLDAFLLEYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L + +   D   D  D A+R  KP + S+L+  K+        A+P Y+K   E  S
Sbjct: 121 KLRLHIGDNLSDFYRDKIDVALRSGKP-KDSALVAFKICNSRRVLCASPDYIKRFGEVSS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
           +++L +HN + F   +        W+   +    + R+S  +  N      ++ V G G+
Sbjct: 180 LEQLSQHNCLFF---MLDERTHDQWVFNKNGQQYKVRVSANRTCNDADIARRWAVAGQGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                  + D+     LV ++ D       +Y   P     T  +   R+ +  + + 
Sbjct: 237 VFKSWLDLTDDIESGRLVPLLNDYQGEEADLYLVCPGREHVTPVILLLRDMLRERCKQ 294


>gi|187920490|ref|YP_001889522.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718928|gb|ACD20151.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 318

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 135/293 (46%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L++F  +AR GSF  A+ ++ LS S +S++I+ LE  +G+KLF R  R + +T  G 
Sbjct: 15  LRDLQLFCNIARRGSFVAASTEMGLSPSHVSKRIAMLEVSLGVKLFQRTTRRVRVTSDGE 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   ++   ++       +   +  G LRI+T++ LG+  +   L      +P+++I
Sbjct: 75  AALQWAQKILDDVQGMADAFADRRTELRGLLRISTSLRLGRKHVSPILALLRQRHPNLEI 134

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++  D+  +  D  +R+ + +    LI  K+V       A+P YL+    P  + 
Sbjct: 135 WLELLDRRADLVGENFDIDVRVGE-VHEPHLIAHKMVESARILCASPEYLERRGLPRELA 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H+ + F     +       L+  D          +  N    ++Q+   G G+ ++
Sbjct: 194 ELAQHDCLLFRGRDDRFGVWR--LSGPDGEKSVKVTGTVASNLSDIVVQWARDGYGVVMV 251

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             + V ++     LVR++ + +  S  V+    E L ++ K++    F+  + 
Sbjct: 252 SIWDVAESLRAGELVRVLPEYMQ-SADVWAVTAERLSSSAKIQVCIEFLREQL 303


>gi|332161041|ref|YP_004297618.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325665271|gb|ADZ41915.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 331

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 126/299 (42%), Gaps = 7/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +  L VF      GS + AA +L+++ ++ S  +  LE+++G++L  R  R L LTE+
Sbjct: 29  ISFSDLDVFVRTVDCGSLSEAARRLNITPAAASIAVKRLESQLGVRLLVRSTRSLRLTEE 88

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G             L   +  ++      SG L+++   D G+NLL   L +F   +P I
Sbjct: 89  GISYLDSARIALGALIEGEQAIKRKMTGLSGVLQLSAPSDFGRNLLVNWLNDFKQQHPHI 148

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPL 181
           Q+ L+L+++  D+  +  D A+R   P   SSL+   +++ H     A+P YL     P 
Sbjct: 149 QLHLLLNDRHADLFREPVDIALRFGVP-TDSSLVALPILSHHRRMLCASPAYLARNGVPQ 207

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + +        +    L   D             +      ++ + G GI
Sbjct: 208 TPAQLVNHQSVLYQRNGRLYNQWR--LIRQDDIQEVTMSGEYISDDGEIARRWALAGLGI 265

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A      V  +     LV+++ D       +    P   + + +++  + F+  + R+W
Sbjct: 266 ANKAAIDVIADIRAGCLVQVLPDWQGEILPLNLLCPHRSQVSERVRGLQTFLQQRCREW 324


>gi|168241240|ref|ZP_02666172.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194447330|ref|YP_002045721.1| regulatory protein LysR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194405634|gb|ACF65853.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205339653|gb|EDZ26417.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 301

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVSRPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++       +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNHY-YDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|330992446|ref|ZP_08316394.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp.
           SXCC-1]
 gi|329760645|gb|EGG77141.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp.
           SXCC-1]
          Length = 314

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 137/294 (46%), Gaps = 6/294 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D +   +F  VA  GSF  AAE + LS+ ++S+ +S LE  +G+ LF R++R ++L
Sbjct: 2   MRLPDLEAWAIFAKVAERGSFARAAEDIQLSKPTVSKAVSRLEQALGVALFNRNSRQMSL 61

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G  L    S +  + E  + + +  ++ PSG +R+A  +  G   L   L +FL  Y
Sbjct: 62  TETGRGLLGHASRILAEAEAAETQARGGTLAPSGLIRVAAPMTFGVRHLSPLLPDFLRQY 121

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I I +   +  +D+     D A+R+   +  S+L  R+L  + +   A+P Y+     
Sbjct: 122 PEIDITMDYSDALVDLVAGGYDVALRIAS-LADSALRARRLCNVRLVLVASPGYVAQAGH 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   + L+ H    + +     M   +  A+  R     + + L+ ++  + +     G 
Sbjct: 181 PDDPRALEGHRSFVYTNTTAPGMIRLHERAS-GREYVLSQTARLRSDNAEAFLPALEAGL 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G  L P+++V +   +  + R++         +Y   P +     ++  F +++
Sbjct: 240 GFGLFPEFMVWEGLKSGRITRLLPQWEAAPVALYLVTPASTLRPIRVTTFIDYL 293


>gi|153833375|ref|ZP_01986042.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148870384|gb|EDL69310.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 299

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 145/296 (48%), Gaps = 9/296 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT 
Sbjct: 4   KVNLADIRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLTRTTRTLRLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G + ++   +    ++   I   + + +  G +R+      +G++++   + EF+L YP
Sbjct: 64  AGERFYQECEKALRDIDQALIAAVDDTQEVRGLIRVNCVGGYIGEDIIAKYVNEFMLEYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L   +  ID+  D  D AIR+ + ++ +  I RKL+ I M   A+P+YLK   EP
Sbjct: 124 NITVDLDFSSPRIDLIEDQFDVAIRMGE-LEDAGFIARKLMMIDMVTLASPNYLKTHGEP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ +EL KH  +T           +  +A             L+  +  +++   + G+G
Sbjct: 183 VTPKELAKHRTLT----GSVTRWSYRNVANPKEHSDVIVKGNLRCKNGRALVMGALHGNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P     +      LV++M +   PS  +   +        +L+ F +F+  K
Sbjct: 239 IIRVPLSYCDEEVKQGQLVKVMPEWEIPSVPLSAIFHRDRYQPKRLRTFIDFVKAK 294


>gi|152985212|ref|YP_001349266.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960370|gb|ABR82395.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 309

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 134/292 (45%), Gaps = 7/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +G+F  AA QL +++S ++ +I  LE  +   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVAETGNFAKAAVQLGVTRSVVTHRIQQLEHFINAPLFHRSTRHVRLSEVGETYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +++     +   +++    KP+GKLR+        +     L EF  LYPDI++ +I
Sbjct: 67  KECADMVAGFNSLTEQMRNLRAKPTGKLRVQMLPGFAIDHFGPLLAEFTALYPDIEVDVI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++  D   +  D A ++  P Q+ +LI+RKL ++     A+P YL+    P    +L 
Sbjct: 127 VNDRLTDPIEEGFDIAFQMFPP-QAETLIERKLFSVRRLFLASPEYLQRHPAPQRPGDLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H +  +     +    F      D  +       ++ NS   +  Y + G+ +  LP  
Sbjct: 186 EHRIALYEGYPSRNRWQFQ---HGDETVELSLAGQVRSNSVHLLRDYALAGTALVCLPTL 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +     L+ ++ D    SF     +P   +   K++   +F+  +  D
Sbjct: 243 VAHADLASGRLLPLLVDYPLSSFNFSAVFPATQRRALKVRTLIDFLVERISD 294


>gi|197295547|ref|YP_002154088.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195945026|emb|CAR57649.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 315

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 122/287 (42%), Gaps = 5/287 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             ++LR    V    SF  AAE+L L+ S++S  +  LE  VG++L  R  R ++ T  G
Sbjct: 6   TLNELRALSAVVSHRSFRKAAEELELAASTLSHMMRDLEERVGVRLLNRTTRSVSPTPAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +   L++   E+  +   PSG LR+  +  +   L+Q  + EFL  YP+++
Sbjct: 66  ERLVTKLHPILQDLDSALAEMDANRDHPSGTLRLTASETVSMLLVQKIIPEFLNRYPEMR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+ +   +DI  +  D   RL + +    +         M   A+  YL   + P + 
Sbjct: 126 VDLVAEPAFVDIVAEGFDAGFRLGEAVPQDMVAVHFGGPSRMIPVASKTYLAARKPPRTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I      P               +       L +N    +++  + G G+A 
Sbjct: 186 VDLAEHQCIC--SRTPNGRPYKWEFKRRGHAVSIDVPGSLVLNRTELMLEAALQGLGVAF 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +P+ + +   DN +L  ++ +       +Y  YP   +    L+AF 
Sbjct: 244 VPEQMARPYLDNGSLSALLSEWCPTYPGLYLYYPGHRQVPVGLRAFV 290


>gi|187923850|ref|YP_001895492.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715044|gb|ACD16268.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 318

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 118/293 (40%), Gaps = 11/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + + A  +  LS +  S +I+ LE  +G +L +R  R ++LT+
Sbjct: 18  RLDLLDVALFVRAALLANVSAAGREFGLSAAVASSRIAQLEKLLGARLLHRTTRRISLTQ 77

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +       +  +  +  +P G+LR++     G+  +   + EFL  YP 
Sbjct: 78  DGEVFMTRAEALLDAAAAARASVGRAQAEPQGRLRVSMPSSFGRQHVSPVISEFLRRYPG 137

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+     D AIR+   ++ SSL+ R+L        AAP YL     P 
Sbjct: 138 VSVDLRLTDQVVDLVDAGIDVAIRVG-VLKDSSLVARRLAVNRRVLCAAPAYLAARGTPH 196

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +   D             T   P+       L  ++   I    + G GI
Sbjct: 197 HPSDLAQHECMILSDQRDWA------FVTPAGPLAVRVSGRLVTDNGEVIRDALLAGFGI 250

Query: 242 ALLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL   + V     +  LV +++      S  ++  YP       K  AF  F+
Sbjct: 251 ALKSTWDVAPYLRSGELVGVLDSYPLAESVAIWAVYPSRSFVPPKTLAFIEFL 303


>gi|332716929|ref|YP_004444395.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325063614|gb|ADY67304.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 305

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 124/293 (42%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +GSF  AA  +   +S++S+ +  LE  + +KL  R  R LT+T 
Sbjct: 1   MDQLGAIRAFVRVVEAGSFAKAASTMGAPRSTVSKLVQDLEASLSLKLLERTTRSLTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +     +    +    E     +   GKLR+         +L   L EF  LYP+
Sbjct: 61  EGVAYYERALRLIADFDEMNNEATRGRLATRGKLRVDVGGTFANTILIPRLPEFYALYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L +  +  DI  +  DC IR    + S+SL+ +KL ++ +   A P YL+    P 
Sbjct: 121 IELHLGVTERQADIVEEGIDCVIRAGD-LPSASLVAKKLCSVEIVTCATPAYLEKYGVPA 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           S  +L + H  + +             L   D  I       L  +   + +   + G G
Sbjct: 180 SPSDLQRDHVFVQYFFARSLKAAPVR-LMNGDEKIEIYSPIKLSTSDATAHLHGILAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I    +++ + +     LV I++D   P + V+   P     + K + F +++
Sbjct: 239 IGQTFEFLARAHIARGALVPILQDWAPPRYPVHIVRPAGRFPSVKYRVFADWV 291


>gi|300313769|ref|YP_003777861.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300076554|gb|ADJ65953.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 132/294 (44%), Gaps = 4/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L+  +S +SR+++ LE  +G++L  R  R + +TE G
Sbjct: 3   DLNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        + +         + +  +P+G+LR+++ + +    L   L  FL  +PD++
Sbjct: 63  SAFFTHCEAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHVFLAPLLARFLCAHPDVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N+ +D+  +  D A+R+R  ++ SSL+ R   T      A+P Y++      ++
Sbjct: 123 LELELSNRRVDVIGEGFDVAMRVRSTLEDSSLVVRTFGTSQQVLAASPAYVRAHGPFDTV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q L     +  G L  +  + +                 +  +    +MQ  + G G+AL
Sbjct: 183 QSLQGQRGLGPGGLPGQA-QRWRLQGPDGEVAEIDYAPAMVTDDMQLVMQTAIGGVGLAL 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP  +         LV ++         ++  +P        ++AF  F+ ++ 
Sbjct: 242 LPFNVAHGAIARGELVVVLPQYRGAPHQLHAVFPSRRGLVPAVRAFIEFLAVEL 295


>gi|167033025|ref|YP_001668256.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859513|gb|ABY97920.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 296

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 15/299 (5%)

Query: 3   FDWD----KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
            D+     ++ VF  VA  GS + AA  L+L+ S++SR ++  E  +G +L  R  R +T
Sbjct: 1   MDFSGRSGEMEVFARVAHEGSLSAAARALNLTPSAVSRILARTEQRLGTRLLLRTTRAIT 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT +G    R    V   +   +  + +    P G+LR++  +   +  +   L  F   
Sbjct: 61  LTPEGEAYLRGARRVLADMLEVEEAITDQ-GVPRGRLRVSAALGHARLTVVPLLAAFSAR 119

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP + + L L ++  DI    AD A+R    +  SSL  R +        A+P YL+ C 
Sbjct: 120 YPQVLVDLTLSDEVADILGGQADVALRFGH-LPDSSLSARTIGETGQVVVASPDYLQRCG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
            PL  ++L +HN + F           +W    D      R++  ++ +S  ++ Q   L
Sbjct: 179 TPLEPEDLARHNCLRFNFRRAAP----DWPFRRDGQTFSLRVAGNIECSSGEALAQLARL 234

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
           G+GIA +  + V D+     LV ++E         ++  +        +++ F +F+  
Sbjct: 235 GAGIARIGTFTVVDDLASGRLVPLLEAYNPDDREPIHAVFVGGPAMPARVRVFVDFLIQ 293


>gi|15800008|ref|NP_286020.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 EDL933]
 gi|12513092|gb|AAG54628.1|AE005207_3 putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
          Length = 329

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 141/302 (46%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ A  ++ ++ +++S+ +  LE  +  KL YR  R +
Sbjct: 23  MKIEPSILPSLAWFALIVRAGSFSRAVSEMGITLAALSQNLKSLEERLNTKLIYRTTRNI 82

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 83  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 142

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 143 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 201

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 202 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSKVVGGNEEFEIEVSGKYISNDDESMIRM 261

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 262 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 321

Query: 292 LK 293
            K
Sbjct: 322 EK 323


>gi|260753534|ref|YP_003226427.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552897|gb|ACV75843.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 297

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 124/295 (42%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L VF  VAR  SFT AA  L  SQS++S  +  LE  +GI+L  R  R + LTE G
Sbjct: 5   DLVDLNVFMTVARELSFTRAAAHLGTSQSTLSYTVRRLEERLGIRLLARTTRQVALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          ++T    L     KPSG +R+  +      ++    +  L  YPDI 
Sbjct: 65  ERLLTQIGPAMDTIDTELKSLSMLQEKPSGTVRLTLSEHAANTVVWPVFERILPEYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D+  +DI  D  D  +RL   I    +  R    + M    AP YL+    P   
Sbjct: 125 VELSVDSGMVDIVADRFDAGVRLGDTIAKDMIATRIGPDLRMVIVGAPEYLRTHTSPQRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +      + W    D      R+   L  ++   I++  + G G+A
Sbjct: 185 QDLASHQCI--NQRMQTSGSLYAWELEKDGQEIRVRVDGQLVFSNTSLIVKAALAGFGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + +  V+++     LV++M D        Y  YP   +++         +  +A
Sbjct: 243 FVMEDHVREHLREGKLVQVMADWCPSFPGYYLYYPSRRQHSAAFSVLLRALHCRA 297


>gi|170745469|ref|YP_001766926.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659070|gb|ACB28124.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 309

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 128/298 (42%), Gaps = 8/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + +R+F   A +GSF+ A   L LS S +S +I  LE  +G  L  R  R ++LTE 
Sbjct: 2   MSLESIRIFLRSAETGSFSAAGRSLRLSPSVVSYRIQTLEEHLGCLLLTRTTRRMSLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++   +E  +  ++ +   P G L++   + LG+ ++   +  F   + + 
Sbjct: 62  GRIFYDRCLDITAAVEQAEKSVETAGAVPRGVLKVTAPLGLGRRVVAPLVPRFRARHGET 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L    +D+  +  D AIRL + ++ S+   RK+  I     AAP YL     P  
Sbjct: 122 DLRLRLSEHLLDLVQEAVDVAIRLSQ-MRDSTFTLRKVAEIDRVLCAAPAYLAEHPAPAE 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L +H+ +          E F W L      +  P    +  +   ++  + + G GI
Sbjct: 181 PADLLQHDCLLLRY---PGSEQFRWTLVDGQETVTLPVAGHIDADDGDTLTAWALAGEGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            L P + V  +     LV+++E     S T+   YP     + + K F +      R 
Sbjct: 238 VLKPLFEVAAHLAEGRLVQVLEHTPPTSVTLGLLYPSRKMLSARTKTFVDMTHEALRQ 295


>gi|86138088|ref|ZP_01056663.1| Transcriptional regulator [Roseobacter sp. MED193]
 gi|85825115|gb|EAQ45315.1| Transcriptional regulator [Roseobacter sp. MED193]
          Length = 291

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 127/291 (43%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  VA  GSFT AA++L +S S +SRQ+S LE  +G+KL  R  R + L++ G 
Sbjct: 2   FEGILEFATVAECGSFTKAAQRLRVSTSHVSRQVSALEDRLGVKLLNRTTRVVQLSDIGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + H+    V   L+        +    +G +R++      +  +   L +F   +P I +
Sbjct: 62  RYHQQVQRVIEGLQEANQTAISTHADLAGPIRMSGAGPFVEEQVAPLLVQFAAQHPKITL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  + + +D+     D AIR    +  S +I RKL +  +   A+P YL     P   +
Sbjct: 122 EMDFETRLVDLVDQGFDFAIRYG-VLAESGMIARKLSSRPLVCAASPAYLDRHPAPHHPR 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H+ +   + + +  +         R  G  R      NS ++  +  V G G+   
Sbjct: 181 TLRDHSCLVINNDLWRFSDPDQKTNIELRVSGRVR-----ANSIVAAREAAVQGLGVIYT 235

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P   V        LV I+ + +  + + +  YPE      +++A  + +  
Sbjct: 236 PASNVVSQIQAGTLVEILPEFVDTTRSHWLVYPERQHMPTRVRAAIDHLIA 286


>gi|300716890|ref|YP_003741693.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299062726|emb|CAX59846.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 306

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 133/296 (44%), Gaps = 9/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ +  F   A S SFT AAEQL +S+S+I + I  LE  +G  LF+R  R ++LT +G
Sbjct: 9   SFNSIVHFVTAANSNSFTEAAEQLGVSKSAIGKSIQRLEHNLGTALFHRTTRKISLTTEG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        L+  ++ L+    +P+G +RI      G++++   L +    YP ++
Sbjct: 69  EAYLASCQSALETLQMAEMALRSKLTEPTGTVRIDLPAAFGRSVMMPILMDMTKRYPHLK 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +I +++ ID      D AIR      ++ LI RKL    +   A+P YL    +P ++
Sbjct: 129 LTIIFNDRIIDPLDIGFDLAIRFGAVKDTTDLIARKLNDQQLIICASPDYLSAYGKPETL 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L+ H  +    L  +     +WL   +  + +        Q++   +++  C+ G+G+
Sbjct: 189 DDLNHHRCV----LAWRGGAPLSWLIRDSEGKDVRIKPTPFHQISDGDAMIDACIAGAGL 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              P  +++    +  LV I+         +   +P A      ++   + +   A
Sbjct: 245 IQFPQALLRPHIQSGKLVPILSACNPAPTELNVIWPRARHLLPGVRFIIDELIALA 300


>gi|167578925|ref|ZP_02371799.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 293

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSF  AAE   +S + ++++I  +E  +G +L +R  R   L++ G   +
Sbjct: 1   MEMFVRVVECGSFAAAAEASQVSATMVAKRIQAIEARLGARLLHRTTRRQQLSDVGQLYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++E  +    E    PSG LRI   +  G   L   L E++ L+P +++ L 
Sbjct: 61  ERCRRALAEVELAESSAAELHATPSGVLRIVAPVGFGSYSLVPALAEYMALHPQVRVDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN          +  + + + I +  L+ R L        AAP YL     P   ++L 
Sbjct: 121 LDNDPPRFWQGDFELGVHIGE-IDAPGLVARPLKPYRRQLAAAPAYLARHGTPKRPEQLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +       +  + +  +                 N   ++    + G GI L P  
Sbjct: 180 EHVCLGLS--YWRRRDRWRLVGPRGEVRDVAVRGGFTANHGDALRVAALQGLGIVLQPQA 237

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++  +     LV ++         +Y  Y +  + T KL++  +F+  +
Sbjct: 238 VLTGDLAAGRLVPVLPAWSLAPSPMYLVYAQDRRPTAKLRSAIDFLLAQ 286


>gi|330014644|ref|ZP_08307947.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328532840|gb|EGF59620.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 294

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 8/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+      +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI     D  +RL   + S  +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIIAQRFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I +          + W   VD +    P              +   LG G+A
Sbjct: 186 ADLVAHPCIAYQF---GDGSLYAWELNVDGKKTPPPPQGQWAFADSYMEAKAARLGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P+ ++ D+     L+R+++         +  YP     +  L+A  +
Sbjct: 243 YVPEELITDDLAQGTLIRVLQRYSQRLEGSFLYYPH-RNVSPALRAVID 290


>gi|207856808|ref|YP_002243459.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206708611|emb|CAR32933.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 301

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++       +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNHF-YDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|319781364|ref|YP_004140840.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167252|gb|ADV10790.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 305

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 133/295 (45%), Gaps = 9/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + ++L  F  V  +GSFT AA +L ++++ +S QI  LE E+G  L  R  R +T TE+
Sbjct: 5   LNLNRLAYFTTVMETGSFTAAANRLGVAKAVVSHQIGKLEEELGATLLQRTTRRVTPTEE 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E    E+   +V+PSG LR+   +D G  ++   +  +L  YP +
Sbjct: 65  GRLFYDRAMIILREAEAAYGEISRGTVEPSGTLRLTAPLDYGTKMVAPVMAAYLRTYPQM 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ I D+   ++  +  D  IR+   +  SS   R+L TI     A+P +  +    L+
Sbjct: 125 RVEAIFDDAVSNLVDEQIDLGIRVGW-LTDSSNQARRLGTIRQIVVASPGFAASLPPDLT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            ++      +    L         WL + D       +   L  +   + +   ++G G+
Sbjct: 184 PRQARSLAWVGNTQLRGIG----QWLFSRDGETVLTELNPVLMCDKSPAALACVLVGIGL 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + PDY V D+     LV +  D   PS  ++  +P A     K++ F + +   
Sbjct: 240 GVFPDYSVSDDIAEGRLVPVFADWSLPSGGIHAVFPPARFRPAKVRTFVDLLAAA 294


>gi|300717430|ref|YP_003742233.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661]
 gi|299063266|emb|CAX60386.1| LysR-family transcriptional regulator [Erwinia billingiae Eb661]
          Length = 300

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS+T AA  L +S S+IS+ I  LET++GI LF R  R L LT +G 
Sbjct: 10  LTGLIAFARAGALGSYTAAARSLSVSPSAISKSIQRLETQLGITLFTRTTRSLVLTAEGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +LH     +    +  +   + S  +P+G LRIA +  +G +++   L +F  LYP ++I
Sbjct: 70  ELHERALRLLQDADEIEQIAKRSRAEPAGTLRIAASYPIGLHMIAPVLPQFCALYPKVKI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ I I  +  D A+RL   +  S+L+ R+L    +  YA+P YL +C  P +  
Sbjct: 130 DLRLSDRVISIVDESIDIAVRLGD-LDDSNLLSRRLSPYRLGCYASPEYLASCSAPENPN 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H  +       +  + F W   V     E   S  + V++  +++     G GI +
Sbjct: 189 DLMSHKTVNL--RYQQTGQLFRWPFQVGERETEILPSSDVVVDASEAVLALVAAGGGIGM 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              ++     +N  LV I+         +   + E+ ++   ++A  + +  +
Sbjct: 247 ATSFMADSWVENKRLVPILTAFAVERHNITALWHESRRSNPAVRALLDHLIDR 299


>gi|218515508|ref|ZP_03512348.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 298

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 118/296 (39%), Gaps = 10/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + SF  A E+L +++S++S+ +  LE  +G+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARSFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G            ++      +++   +PSG LRI  +      L    L  F+   P
Sbjct: 61  EAGEVFFAAVRPSVRQVRDAMQTVRDMQARPSGLLRITVSSIAESFLSGTLLAGFMQACP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + + + DI     D A+RL + I+   +           A A+  YL+    P
Sbjct: 121 EIKLDITVTDDEFDIVETGFDAAVRLGEVIEQDMIAVSVSEPQRQCATASTAYLERHGGP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  I +          +      +R         +  N    +++    G+G
Sbjct: 181 RHPGELRDHACIGWRPRPDTAPYRWE-FTENNRDFDVAVDPAVTTNDMGMMIRLACAGAG 239

Query: 241 I------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I         P +   D   LV ++ED   P    Y  YP   +   KL+A    I
Sbjct: 240 ITFGMMETFQPYF---DRGELVPLLEDFCPPFPGFYLYYPRRERQPLKLRALVEHI 292


>gi|170736194|ref|YP_001777454.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818382|gb|ACA92964.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 310

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 122/275 (44%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 31  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLEYARRILDQMDELGELL 90

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YPD+ +QL L      ++ D  D  I
Sbjct: 91  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPDVSVQLQLSVMPPPLTDDAFDVCI 150

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L        AAP YL     P +  +L +HN I    GD      
Sbjct: 151 RFGEP-PDARVVARRLAPNRRLLCAAPAYLARHGVPGTPHDLTRHNCIGIRQGDEGYGVW 209

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
              +                L  N     +++ + G GI +  ++ ++D   +  LV ++
Sbjct: 210 RLTSGRGAARHTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDLRDYLADGRLVVVL 269

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D  TPS  +Y  Y +  + + +++AF +F+  + 
Sbjct: 270 PDHETPSADIYAVYAQRHQMSTRIRAFVDFLAEEL 304


>gi|86747653|ref|YP_484149.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570681|gb|ABD05238.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 297

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 123/289 (42%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +A   SF  AA  L +S S++S  +  LE  +G++L +R  R +  TE G
Sbjct: 6   DLSDLTAFAAIAAHRSFRKAANDLGVSASTLSHIMRTLEANLGVRLLHRTTRSVAPTEIG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + V    +    +L+    +PSG LRI       + LLQ  +  F   +P++ 
Sbjct: 66  ERLLGRLNPVLRDFDAALQDLEAWRSRPSGTLRINAAEGAVRLLLQTVVPAFFARHPEMA 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+ + + +DI  +  D  IR+ + +    +  R    I   A A+P YL     P + 
Sbjct: 126 LDLVTEARLVDIVAEGFDAGIRIGEAVPRDMVAVRFGGAIRFVAVASPGYLAAHPPPRTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I F     K  + F W  A   + +       L ++    +++    G GIA
Sbjct: 186 DDLVHHACIRFRL---KSGQLFRWEFARHGQELAVDVAGPLTLDHVELMVEAAADGLGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +PD   +       +V ++++       ++  YP        L+AF +
Sbjct: 243 YVPDRTAQPYLSRGAVVGVLDEWCPKIPGLFLYYPGHRHVPAGLRAFID 291


>gi|217974510|ref|YP_002359261.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217499645|gb|ACK47838.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 299

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 134/298 (44%), Gaps = 11/298 (3%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M  +   D +R+F+VVA+ GSF  AA+ L +  S++SR+I+ LE  +G++L +R A  + 
Sbjct: 1   MKLNYSLDDMRLFWVVAQQGSFKLAAQHLCIPPSTLSRRINLLEQSLGLRLLHRDAHRVN 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT  G +       ++ +L     EL     +  GKLRI+  I+     L  +L  F   
Sbjct: 61  LTATGQRYLERCGPLFIELNQVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRH 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP+I I L L N +ID+S +  D A R+ +P +    I R L TI     A         
Sbjct: 121 YPNIDIDLSLSNMNIDVSENAIDIAFRVGEP-KDPDWIARPLTTISFVLCACSS-ATQWH 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVL 237
              SI+ L++H +I      P          T      EPR +  L V+      Q  V 
Sbjct: 179 ALQSIEALEQHPVII---AKPVKTWRLQHNITGQNFEFEPRGNIKLAVDDMAIASQAVVA 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G GI LLP  +  +   +  LV+I+ +      T Y  Y +      +++   +F+  
Sbjct: 236 GLGIGLLPISMASEQIQSGKLVQILPEWQGIPRTAYLMYRDRDNLPLRVRLLIDFMLA 293


>gi|83719170|ref|YP_440864.1| LysR family regulatory protein [Burkholderia thailandensis E264]
 gi|167617658|ref|ZP_02386289.1| LysR family regulatory protein [Burkholderia thailandensis Bt4]
 gi|257140481|ref|ZP_05588743.1| LysR family regulatory protein [Burkholderia thailandensis E264]
 gi|83652995|gb|ABC37058.1| LysR family regulatory protein [Burkholderia thailandensis E264]
          Length = 320

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   +  +   Y D+ +++ 
Sbjct: 67  ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAQRYADVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPTTIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ I      P        ++ V      P    + VN    +    + G+GIALL  
Sbjct: 187 QHHSFI---RREPNETLLDAAISDVAAASRVPLSGNVIVNHLEGLRVAVLDGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V ++     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFLADR 294


>gi|152983120|ref|YP_001354504.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151283197|gb|ABR91607.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 303

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 124/295 (42%), Gaps = 4/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +    F  V   G FT A   L + +S++S ++  LE+ +G++L  R +R   +T+ 
Sbjct: 2   LDLNDFYFFVHVVDRGGFTAAGRTLQVPKSTLSHRMQQLESNLGVRLLNRTSRRFGMTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +R    +  + E  +  ++    +P+G +R    +   Q  L   + +FL +YP +
Sbjct: 62  GEEFYRHAVAMLREAELAETTVRNRLGEPTGTVRCTAGVATMQFALAEIITDFLKIYPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +     ++ IDI  +  D AIR    P+  S+L+Q+ L       +A   Y+     P 
Sbjct: 122 NVVAHSADRPIDIVGENYDIAIRAHTDPLPDSNLVQKTLAPTPWFLFAGADYIDANGAPK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  +         +     ++     I  P    L  +  + + +  + G GI
Sbjct: 182 KPQDLQNHPSLFMMRTNVAPVWKLRHVSQAKDEIVMPLTPRLLSDDMVGLQRAAINGLGI 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             LP YI ++   +  L R++ D I    T+    P        ++ F + +  +
Sbjct: 242 VALPSYICREAVRSGALRRVLPDWIAGDATITALIPYRKGLLPSVRVFLDHLAAE 296


>gi|152969866|ref|YP_001334975.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954715|gb|ABR76745.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 294

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 8/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+      +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKHRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI     D  +RL   + S  +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIIAQRFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I +          + W   VD + I  P              +   LG G+A
Sbjct: 186 ADLVAHPCIAYQF---GDGSLYAWELNVDGKKITHPPQGQWAFADSYMEAKAARLGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P+ ++ D+     L+R+++         +  YP     +  L+A  +
Sbjct: 243 YVPEELITDDLAQGTLIRVLQRYSQRLEGSFLYYPH-RNVSPALRAVID 290


>gi|85712917|ref|ZP_01043958.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
 gi|85693297|gb|EAQ31254.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
          Length = 304

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 136/297 (45%), Gaps = 9/297 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+  D     +F  V  +GS + AA  L L ++++SR++  LETE G++LF R   G+ L
Sbjct: 1   MALPDITNYYLFAKVVEAGSISSAARALSLPKATVSRRLQQLETEQGMRLFNRSQSGIRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G        ++    E+ Q   Q    KP G++  +    L Q+LL   L EF+ LY
Sbjct: 61  TDVGEAFLLHCQQLVEAAESAQQVTQRLLEKPRGRVNFSAPYALSQSLLVDVLPEFMTLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I I L++ N+ I++  +  D A+R+R  I+ SSLI R L    +  +AAP  L+    
Sbjct: 121 PEININLVVTNRPINLIDEGIDVALRVRPNIEDSSLIARPLSESPLTLFAAPALLEQH-P 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLG 238
                +L   N ++      +            + I  EPR   L  +  + + +  +  
Sbjct: 180 INEPSDLLALNHLSLHYTSGQYRYLLTHEKGEQQTIKFEPR---LITDDMIVLRESAIKA 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G+  LP Y+  +   N  LV+++ +   P   ++  YP        ++   +++  
Sbjct: 237 QGVTALPTYLCNEAVQNQQLVQVLPEWTLPVGIMHLTYPHRRGLLPAVRVLIDYLTE 293


>gi|238896115|ref|YP_002920851.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548433|dbj|BAH64784.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 310

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 132/290 (45%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + VF  V  SG+F  AA  LH+++S++ + I+ LE  +G+ LF R  R   LTE+G
Sbjct: 12  DLNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLTEEG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    E   ++   +  LQ    +  G+LR++  +  GQ  +   L      YP ++
Sbjct: 72  EQFYLQCREALERIREAEETLQRGKDEVQGRLRVSLPVLFGQRCVAPLLFRLSQRYPLLK 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +++  +  D A+R+     + SL  R L    M   AA  YL+    P +I
Sbjct: 132 LELHYSDRQVNLLEEGFDLAVRIGSLADTGSLRARALGEHGMVLCAAAEYLRQQPAPQTI 191

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L++H  + +  L    ++ +         +     + L  + + +I      G GIA 
Sbjct: 192 AGLNEHRTLGY--LHNGQLQKWQLYDPQQGEVRFSPQTWLIQDDFAAIAAAVQQGMGIAW 249

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPD++V     +  L +++       F ++  +PE      K +A  + +
Sbjct: 250 LPDWLVAQALADGTLQQVLAPSAQVRFAIHAVWPEGPWLPQKTRAAIDAL 299


>gi|83718916|ref|YP_441149.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167617974|ref|ZP_02386605.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257140189|ref|ZP_05588451.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83652741|gb|ABC36804.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 310

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 117/295 (39%), Gaps = 5/295 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     SGK+R+++T D G+N L   L EF   YPD
Sbjct: 61  EGRLYLNCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRNQLLDWLDEFNARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   +   +   ++  D  D AIR   P    +LI R L        A+P ++     P 
Sbjct: 121 VTFSVTASDSSSNLWQDEIDLAIRFAAP-PDGALIARPLAANRRVLCASPAFVDKYGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPHDLARFPCNVITVASGPINVWRFTRGGDTQTYTVPLANAHETNDGGFTREWTIRGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           AL   + V  +     L  ++ +       ++  +        +++   +F+  +
Sbjct: 240 ALKSIWDVARDVRAGRLKVLLPEWRHQDAPLHAIHHSKRYMAPRVRVLLDFLVER 294


>gi|260597454|ref|YP_003210025.1| hypothetical protein CTU_16620 [Cronobacter turicensis z3032]
 gi|260216631|emb|CBA29934.1| hypothetical protein CTU_16620 [Cronobacter turicensis z3032]
          Length = 312

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 129/288 (44%), Gaps = 6/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  +  SGS + AA+Q++ +Q+++SR++  LE  +G +L  R    + LT+ G +
Sbjct: 10  ELMHTFVRIIESGSLSAAAQQMNTTQATVSRRLKSLEDLLGARLLLRTTHAMKLTDDGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    V    +  + E++ +  +P G LR+      GQ+ L   L  FL  YP + + 
Sbjct: 70  CYQHARSVLASWQALEDEIKNAEGEPVGVLRVRAPHAFGQDQLIEPLTAFLNRYPGLCVD 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L++K  D   +  DCA+ +   I   S+I  +L  +     A+P  L+       I +
Sbjct: 130 WMLNDKSPDFIGENIDCALHVGPDI-DPSVIAVQLAEVPRIVVASPALLERHAPVKEIDD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L     +       + +   +      +      +  L  +S  +I +  + G G  ++ 
Sbjct: 189 LAALPWVALSTFYRREVTLHHVQRGDRQAFTV--MPRLSSDSLYAIRRAILNGLGAGMVS 246

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++V+D+     LV+++     P+  VY  YP A     +L+ F   +
Sbjct: 247 AWVVEDDLREGRLVQLLPQWQAPALPVYLLYPWARYYPARLRRFLELM 294


>gi|254429073|ref|ZP_05042780.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
 gi|196195242|gb|EDX90201.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
          Length = 301

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 127/292 (43%), Gaps = 8/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A+  + + +S +SR+++GLE  +G++L  R +R  ++TE G
Sbjct: 3   DLNDLFYFAKVVEFGGFAPASRAITVPKSKLSRRVAGLEERLGVRLINRSSRQFSVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +  + E+ Q  +   + +P G +R+A  I L    +   L +F+  YP+I 
Sbjct: 63  QQYYEHCKAMLVEAESAQEAIDTVTAEPRGVIRLACPITLLHVHIGSFLADFMKQYPEIT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R P ++ S L+ R L    +   A+P  +     P  
Sbjct: 123 VHLEATNRRVDVISEGVDVAIRVRPPGLEDSDLVVRVLSDRRLALVASPELVAQYGMPGH 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            QEL     +  G   P            + R   +PR         +++ +  V G G+
Sbjct: 183 PQELSSWPSLGLGTPRPDFRWSLRGEDGSEVRVFYQPR---YVTTDMIALRRAAVAGVGV 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP   V+   +   LV+++         ++  +P        ++   + +
Sbjct: 240 VQLPILTVQHQLERGELVQLLPRWALAKDIIHAVFPSRRGMLPAVRTLIDRL 291


>gi|148360190|ref|YP_001251397.1| LysR family transporter transcriptional regulator [Legionella
           pneumophila str. Corby]
 gi|296107987|ref|YP_003619688.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy]
 gi|148281963|gb|ABQ56051.1| transcriptional regulator, LysR family [Legionella pneumophila str.
           Corby]
 gi|295649889|gb|ADG25736.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy]
          Length = 301

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 13/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S + + L +F +V +  SFT AA +  +S++ +S++IS LE ++ IKL  R  R L+LT 
Sbjct: 5   SLNLNDLAIFALVVKKRSFTQAALEAGISKAWVSQKISQLEGKLDIKLLNRTTRSLSLTL 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +  ++   +  L+E +  PSGKL I      G +L    L +F LLYP 
Sbjct: 65  GGEILFEHCQAMLKEVIHAENHLREYAKAPSGKLVITCPEISGLDLFPALLHQFKLLYPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+LI+ ++ +D++    D A R  K +  S L+ R +  +     A+P YL N     
Sbjct: 125 IKIRLIITDQFVDLTQQGIDFAFRTGK-LTDSGLVSRYIGAVPRCLVASPEYLSNNSPIK 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS 239
           S  +L  H L+    L        +WL   +    +  +    ++ NS + + +   L  
Sbjct: 184 SPADLFNHQLLKHSSLP-------DWLLKKEEEAFKIHVKNPVIESNSLIFLHKMSCLHH 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA LP Y+  D   +  LV+++ D +      Y  Y +        + F++FI  
Sbjct: 237 GIAFLPYYLCSDALKHKTLVKVLPDWLNVDNEYYMVYHKEKSVLYIHQLFKDFILQ 292


>gi|77457171|ref|YP_346676.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381174|gb|ABA72687.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 293

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 134/293 (45%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+   F  V  +GS T AA+ L  +++ +S  +  LE E+G+ L  R+ R L LT+ G
Sbjct: 3   SLDRFDTFKAVVEAGSLTAAADTLGQTRAVVSFNLKRLEEELGVTLLTRNTRQLALTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R       +      E +    +  G LRI TT++     +   L+ F    P + 
Sbjct: 63  ERFYRRCLRTLDEARLAVEEARSEHSQLKGTLRITTTVEFALAQVVPALEVFRQQQPQLN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L   +   D+  +  D AIRL + +  S+L   +L T  + A AAP  ++      ++
Sbjct: 123 IHLSTSSTHADLISERFDLAIRLGRML-DSNLRAVQLSTFEVFAVAAPGLIERFAPVDTL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L+    +  G +    + D      + +P  +P  + +  ++  ++  + + G G+A+
Sbjct: 182 AVLESMPTLGHGRVPEMTVSDPAGTEHIYQP--KPGTTAIVADNSATLRAFALTGQGVAI 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP ++++++     L R++ D       VY  YP+      K++AF +F+  +
Sbjct: 240 LPQWLIQEDLDAGRLQRLLPDYRFAQQGVYALYPDTRHLPLKVRAFIDFMKGR 292


>gi|325920261|ref|ZP_08182209.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
 gi|325549254|gb|EGD20160.1| transcriptional regulator, LysR family [Xanthomonas gardneri ATCC
           19865]
          Length = 303

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/285 (27%), Positives = 133/285 (46%), Gaps = 9/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F   A +GSFT AAE+L L+ S++ + I+ LE  +G++LF R  R L LT+ G+  +RV
Sbjct: 12  IFVSAADAGSFTAAAERLSLTSSAVGKAIARLEARLGVRLFARTTRRLALTDAGAAFYRV 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V  +LE  +  L+     P+G+LR+   +  G+  +   L  F   YP +Q  +   
Sbjct: 72  CVKVLDELEEAEHVLRAEGQAPTGRLRLDLPVSFGRRKVLPVLLPFFQRYPGLQPSISFT 131

Query: 130 NKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           ++ +D++ +  D A+R+  P Q  SSL  R L        AAP YL +   P SI  L  
Sbjct: 132 DRFVDMAEEGIDIAVRIGGPDQWHSSLGHRYLGHEKRVFCAAPQYLAHRGTPDSIAALLA 191

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALLPD 246
           H+ + +G           WL        E R   + +   +  + +   V G GIA LP 
Sbjct: 192 HDAVLYGQANRSSSP---WLLRHGAGPVEQRAMDARVVFGNAEAQVDAVVAGLGIAQLPT 248

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +++  +    +LV ++    T    ++  +  A +   KL     
Sbjct: 249 WLIDHHLQRGSLVAVLPQCDTEGLPLHLVWMRARQLLPKLSRLLE 293


>gi|312796028|ref|YP_004028950.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312167803|emb|CBW74806.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 329

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 133/299 (44%), Gaps = 9/299 (3%)

Query: 1   MSF---DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+    D + L  F  V   G F+ A   L +S+S +SR++S LE  +G++L  R  R L
Sbjct: 1   MNLGHHDLNDLLYFSQVVEYGGFSAAERALGISKSRLSRRLSDLEAALGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G+  HR    +  +       + +    P G +R++  + + Q +L   + EFL 
Sbjct: 61  ALTEAGALFHRHCVAMLGEARAALDAVHQLGSTPRGTVRVSVPMTVSQTMLAHWMPEFLR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YPD+++ + + N+ ID+  D  D A+R+R +P  +++++ R L         +P  L  
Sbjct: 121 RYPDVKVVVHVTNRVIDLFEDEIDVALRVRSEPHANANIVVRPLWRREQMLVGSPSLLDA 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P+   +L ++  ++      + +  F  +A             L     L I Q  +
Sbjct: 181 NHPPMVPADLARYATLSVPSADGRYV--FKLIAPDGSHHDYEHEPRLVTADLLMIHQAVL 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G GIA+LPD I +   +   L  +M     P   +Y  +         ++AF +F+  
Sbjct: 239 AGVGIAVLPDNIYQAAMNAGQLSPVMPGWTLPPPQLYAVFLSRQGLLPAVRAFIDFLVE 297


>gi|221201367|ref|ZP_03574406.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221208847|ref|ZP_03581845.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221214071|ref|ZP_03587044.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221166248|gb|EED98721.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221171303|gb|EEE03752.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221178635|gb|EEE11043.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 305

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 120/297 (40%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L++ +S +SR+I+ LE  +GI+L  R  R  T+T+ G
Sbjct: 7   DLNDLYYFVQVVEHGGFAPAGRALNMPKSKLSRRIALLEARLGIRLIQRSTRRFTVTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +     +P G +R++  I L  +L+   +  F+L  P ++
Sbjct: 67  QTYYAHCRAMLVEADAADEAVALLHEQPRGIVRVSCPIVLLDSLVGDMIAAFMLACPRVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P+  S L  R L        A+P  L+    P  
Sbjct: 127 IHLEATNRRVDVIGEGIDVAIRVRPPPLDDSDLALRVLAERGQCLVASPALLREHGTPAV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +    +    +P+    +                       L++    V G GI 
Sbjct: 187 PADLARLP--SLDHGVPQAAHVWRLRGPDGASAEIHHQPRFVTGGMLALRAAAVAGVGIV 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +V+D      LV ++ D       V+  +         ++A  +F+  +  +
Sbjct: 245 QLPTMMVRDEFARGTLVTVLPDWAPRREIVHAVFASRRGLLPAVRALLDFLAARFAE 301


>gi|16264224|ref|NP_437016.1| putative transcriptional regulator protein [Sinorhizobium meliloti
           1021]
 gi|307316716|ref|ZP_07596159.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15140349|emb|CAC48876.1| putative transcriptional regulator protein [Sinorhizobium meliloti
           1021]
 gi|306897914|gb|EFN28657.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 298

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 133/299 (44%), Gaps = 11/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +RVF  VA   SFT AAE L L +S+I+  +  LE  +G++L  R  R +  T 
Sbjct: 1   MDRFDAMRVFARVAERRSFTLAAEDLGLPRSTITDAVKQLEGRLGVRLLQRTTRVVRTTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +     +   PSG LRI       ++ L   LK FL  YPD
Sbjct: 61  DGEAYYHRCVRLIADLEDAEAVFSGA--SPSGLLRIDVHGTQARHFLLPGLKVFLDRYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +DI  +  DC +R    +  S LI RKL  +    +A+P YL     P 
Sbjct: 119 IRLHISETHQPVDIVREGYDCIVRAGH-LADSPLIGRKLAELKRGTFASPEYLARFGTPH 177

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             ++L D H ++         +  F + +A   R +  P  + + V    + +     G 
Sbjct: 178 VPEDLFDGHQMVGLLSSDTPSVAPFAFVVAGKARELTLP--TVVTVTGPETNVASACAGL 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+  +P Y V     +  LV ++ D       V+  Y    + + +L+ F ++I  + R
Sbjct: 236 GLIQVPRYRVASELASGALVEVLTDFPPSPLPVHVLYSHTRQLSPRLRVFIDWITERYR 294


>gi|325523181|gb|EGD01565.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 300

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 7/300 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+D +R+F  V   GSFT AA  L +  S +SR++  LE ++G++L YR  R +++TE 
Sbjct: 1   MDFDSIRIFLRVVERGSFTAAATLLDMPLSRVSRKVKQLEDDLGVQLLYRTTRRVSVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     + +     P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYERCLRAEEILLDADRQARALRTAPEGTLRVLVPYSIGLFELEPALAEFRRRYPLV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  SS + R L        A+P YL     P +
Sbjct: 121 QLVLIYDNNPLDLVEHGFDVALRAG-VLTDSSYVARSLGWSQAKLAASPAYLDRVGRPCT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+L+  G   P                  P    L  N  +++++    G GIA
Sbjct: 180 PRDLAQHDLLLVGRDAPGLT--LRLTNVAGEVADVPVRPVLITNESVTVLRQAASGGGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           L+  +      +   L  ++ D   +    ++  YP       K++AF +F+      W+
Sbjct: 238 LISTHYTGRRLERNELEIVLPDWHRSDDVELHVLYPRRATLDSKVRAFVDFLAEVFTGWR 297


>gi|16760210|ref|NP_455827.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142021|ref|NP_805363.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213053174|ref|ZP_03346052.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425885|ref|ZP_03358635.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213645923|ref|ZP_03375976.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213865151|ref|ZP_03387270.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829642|ref|ZP_06547185.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25319789|pir||AD0660 probable transcription regulator STY1386 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502505|emb|CAD01653.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137650|gb|AAO69212.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 301

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++       +   YP+    +  ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNHF-YDLPLALVYPQNRFLSPAVRAFYDW 289


>gi|87121646|ref|ZP_01077534.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86163178|gb|EAQ64455.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 294

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 129/299 (43%), Gaps = 16/299 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  +A  GSFT  AEQ + S+S IS++I  LE ++G +L +R  R L LT 
Sbjct: 1   MDKLRAIKLFVKLANLGSFTKVAEQTNTSKSMISKEIGRLEDDLGARLLHRSTRNLQLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   E+  KL+     + +      GKL+I   + LG   L     +F+   PD
Sbjct: 61  VGEGYLQRAIEILEKLDDADNFVSDLQHNVRGKLKINAPMALGITDLSVLFADFMHENPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L ++ +D+     D  +R       S+ + + L        A+P YL   +   
Sbjct: 121 IELDIHLGDESVDLVEQGFDLGLRASSRAIDSNYVGKPLTRFTYKVCASPEYLAKHKAIN 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L +HN   +     K +             G      L+VNS L +M     G G+
Sbjct: 181 LPQDLSEHNCFVYSYFQGKDVWPI--------EDGVAVKGNLKVNSTLFMMDAIKKGLGL 232

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +PD++ +   D+  +V ++ +   P  T+Y  YP       KL     ++     DW
Sbjct: 233 GFIPDFVCQKMIDSGEVVEVLAEANKPRLTLYALYPARHFVPTKLVKCIRYL----EDW 287


>gi|290474489|ref|YP_003467369.1| putative transcriptional regulator [Xenorhabdus bovienii SS-2004]
 gi|289173802|emb|CBJ80584.1| putative transcriptional regulator with periplasmic binding protein
           domain (LysR family) [Xenorhabdus bovienii SS-2004]
          Length = 306

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V  + SFT AA+ L LS+SS+SR+I+ LE  +G +L  R  R + +TE G
Sbjct: 6   NLTSMVIFARVVETLSFTEAAKSLRLSKSSVSREIAQLEVRLGTQLLNRTTRKIQVTEVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++  S + ++ ++ +  ++    +P G LR+   +  G   +   L  F+     + 
Sbjct: 66  LSYYQYCSRILNEAKSAERFIRNFHDEPMGNLRLIAPVSFGSQCIVPALNNFIARNIHVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ I+++ D  D AI + +      L+   L+ I    YA P Y+         
Sbjct: 126 VDLELTDRTINMTDDNYDIAIIVGRETPDHPLVM-PLIDITWGLYATPDYMSQFPPIEKP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +++ + F          F       + +     S  ++N+ +++M   + G+GIA 
Sbjct: 185 EDLPRYDYLLFRGPAHTISLPFR---KERQKLDIEVRSRFRINNSVALMSSALSGAGIAY 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LPDYI  ++     LVR++       +  +  +      + +++ F + +  K +
Sbjct: 242 LPDYIAHESVAEGKLVRLLPGWHMDIYQTWMMFKSENTLSARVQLFADALQQKLQ 296


>gi|283784873|ref|YP_003364738.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282948327|emb|CBG87912.1| putative LysR-family transcriptional regulator [Citrobacter
           rodentium ICC168]
          Length = 316

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 120/290 (41%), Gaps = 6/290 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  +  +GS + AA QL+ +Q++ISR++  LET +G+KL  R    + LT+ G +
Sbjct: 16  ELMRTFVRIVEAGSLSAAARQLNTTQATISRRLQSLETMLGVKLVLRTTHAMKLTDDGER 75

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +       +  L      P G LR+      GQ  L   L  FL  YP++ ++
Sbjct: 76  GYQHAKRIIDAWLALEDGLNVVEDDPVGTLRVRAPHAFGQQQLLSPLLSFLARYPNLSVE 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L++K +D   D  DCAIR+   +   + +   L  +     A P  L       S ++
Sbjct: 136 WMLNDKTVDFLRDNIDCAIRVGAEV-DPATVSVLLAEVPRSVVATPELLARHPRISSPEQ 194

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L     I         +   +        +  P    L  +S        + G G+A++ 
Sbjct: 195 LSTLPWIALNTFYQHSVSLSH--RHSREAVSLPIAPRLSTDSIYVARNAALAGLGVAIVS 252

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + V ++     LV ++ D       V+  YP A     +L+ F   +  
Sbjct: 253 SWTVAEDIAAGRLVELVADWQAAPLPVHLVYPWARYYPTRLRRFLELMKE 302


>gi|172061650|ref|YP_001809302.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994167|gb|ACB65086.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 310

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKVATRLFERSTRQLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     +GK+R+++T D G+N L   L EF  L+P 
Sbjct: 61  EGRLYLNCCRQALQALDDAHALLQEGRNVVAGKVRLSSTSDFGRNQLLDWLDEFTTLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L   +   ++  D  D AIR   P    +LI R+L        AAP ++     P 
Sbjct: 121 VTFSLTASDSASNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFVARHGMPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPHDLARFPCNVITIASGPMNTWRFTRGDEVQTHTVPVSTAFETNDGGLTREWTLRGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           AL   + + D+     L  ++ D       ++  Y        +++   +F+  + AR+
Sbjct: 240 ALKSLWDIADDVRAGRLRVLLPDWRHQDAPLHAIYHSKRYMAPRVRVLLDFLAERFARE 298


>gi|296157798|ref|ZP_06840632.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295892044|gb|EFG71828.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 317

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 117/299 (39%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + + A  +  LS +  S +I+ LE  +G +L +R  R ++LT+
Sbjct: 17  RLDLLDVALFVRAALLANVSAAGREFGLSAAVASSRIAQLEKLLGARLLHRTTRRISLTQ 76

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +       +  +  +  +P G+LR++     G+  +   + EFL  YP 
Sbjct: 77  DGEVFMTRAEALLDAAAAARASVGRAQAEPQGRLRVSLPSSFGRQHVSPVISEFLRRYPG 136

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ ID+     D AIR+   ++ SSL+ R+L        AAP YL     P 
Sbjct: 137 VSVDLRLTDQVIDLVDAGIDVAIRIGM-LKDSSLVARRLAVNRRVLCAAPAYLAGRGTPH 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +   D             T   PI       L  ++   I    + G GI
Sbjct: 196 HPSDLAQHECMILSDQRDWA------FVTPAGPIEVRVSGRLVTDNGEVIRDALLAGFGI 249

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           AL   + V     +  LV +++         ++  YP       K  A   F+     D
Sbjct: 250 ALKSTWDVAPFLRSGELVSVLDSYPLAERVAIWAVYPSRSFVPPKTLALIEFLTAHFGD 308


>gi|307729608|ref|YP_003906832.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584143|gb|ADN57541.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 320

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 11/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + + A  +  LS +  S +I+ LE  +G +L +R  R ++LT+
Sbjct: 20  RLDLLDVALFVRAALLANVSAAGREFGLSAAVASSRIAQLEKLLGARLLHRTTRRISLTQ 79

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +       +  +     +P G+LR++     G+  +   + EFL  YP 
Sbjct: 80  DGEVFMTRAEALLDAAAAARASVGRGQAEPQGRLRVSMPSSFGRQHVSPVISEFLRRYPG 139

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ ID+     D AIR+   ++ SSL+ R+L        AAP YL     P 
Sbjct: 140 VSVDLRLTDQVIDLVDAGIDVAIRIG-VLKDSSLVARRLALNRRVLCAAPSYLTERGTPH 198

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +   D      E      T    +       L  ++   I    + G GI
Sbjct: 199 HPSDLAQHECMILSDQRDWAFE------TPAGTLDVRVSGRLVTDNGEVIRDALLAGFGI 252

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           AL   + V     +  LV +++         ++  YP       K  AF +F+
Sbjct: 253 ALKSTWDVAPFLRSGELVSVLDSYPLAEKVAIWAVYPSRAFVPPKTLAFIDFL 305


>gi|325522416|gb|EGD01000.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 301

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 128/293 (43%), Gaps = 5/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDKLDGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEQRLGTRLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  +  L     +P GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALAELEAAEANLDCGRHEPRGKLRLSVPLAFGHHCVTPVVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    A+P YL     P
Sbjct: 121 HLRIDVSITDRFVDLVDEGIDLAVRIGPLADSTSLAVRRLGTQYGSLGASPSYLARYGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H  I +        + ++  A     +       L  +   +I      G G
Sbjct: 181 HTLDDLKTHRTIAYSR--SGVPQPWDLRAPDGSTVRVDMQHQLSFDDVQAIAAAGASGFG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP +++        +  +++        ++  +P+      K +   + +
Sbjct: 239 IAWLPSWLLDHYVKRGEMAVVLDRCFVCEGGIHAIWPKTRYLPRKTRCVIDAL 291


>gi|146306559|ref|YP_001187024.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574760|gb|ABP84292.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 307

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 118/294 (40%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V  +G F  AA++   S SS+S  +  LE E+G++L  R  RGLT TE G
Sbjct: 5   NLSDIALFAAVVEAGGFRAAAQRRGTSASSLSDCVRRLEQELGVRLLNRTTRGLTPTEIG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L         ++     +LQE    P G LR+     + +++L   L  FL  YP I 
Sbjct: 65  ARLLERLRPALDEINAALNDLQEDPQHPVGSLRLHVPGVIARHILPPLLDGFLARYPGIA 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH--MHAYAAPHYLKNCREPL 181
           +++ +DN  ID+     D  IR  + +    +I   +        A AAP YL+    P 
Sbjct: 125 LEVNMDNTFIDVIGAGYDAGIRYEESLAKD-MIAIPIGPRRQCFMAVAAPSYLQRHGTPQ 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL +H L+ +     K            R +       L  +S   ++     G GI
Sbjct: 184 HPGELSEHRLLGYRFASGKLGVWE--FEQDGRTLRIAPEGRLVSSSQDLLIAAACAGHGI 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               +  +  +     L  I+ D        Y  Y         L+AF +++  
Sbjct: 242 LYTFEEYIAAHLASGQLQPILHDWWQHFEGPYLYYHSRRHVPAPLRAFVDYVKA 295


>gi|89071933|ref|ZP_01158529.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89052034|gb|EAR57485.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 301

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 130/297 (43%), Gaps = 11/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F +V    SF+ AA  ++L  S++SRQ+S LE  +G++L  R  R + LT
Sbjct: 1   MDL-LKSIETFQLVVEHKSFSGAAHAMNLVPSAVSRQVSELEKWLGVRLLQRTTRSIGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G       + +   +E  +     +     G+LRI   + LG+ +L   L  F   +P
Sbjct: 60  TEGRAYLAKMALISQNVEELKGVTPAT-ATLKGELRITAPLILGKYILPPILSLFRKQHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L L N+++++  +  D A+R+ + +  S LI R L    +   A P+Y++   E 
Sbjct: 119 EVKLSLFLTNRNVNLIEEGYDLALRVGE-LVDSELIARSLGEYKIKTVATPNYIQCNGEV 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  Q+L +H  +            +      D+ I       ++ N    + ++C+   G
Sbjct: 178 LIPQDLKQHTCLINSARQTPRRWTYQ---MNDKVIQIKVNGEIESNDSDVLREFCLQDQG 234

Query: 241 IALLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LPD+    +VK    L+ I+     P   +   +          ++  +F+  +
Sbjct: 235 ILQLPDFQTNHLVKK-GKLIEILSQYSPPPQQISLLFTRNRLMGPAQRSLIDFLVSQ 290


>gi|114561684|ref|YP_749197.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114332977|gb|ABI70359.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 312

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L ++++++SR+I+ LE + G++L +R  R L LTE 
Sbjct: 1   MDLNRVQIFSQVVEQGSFTGAAKALGITKATVSRKIADLEADAGVQLLFRTTRSLKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   S++   L+  +  L  S     G L++   I+LGQ  L   L  FL  YP+I
Sbjct: 61  GSSYYHRISKILQDLQNAEDLLSASQQDIKGNLKVICPIELGQLFLGRILARFLAAYPNI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I   L N+ ID+  +  D   ++ +      L    LVT      A+P YLK    P  
Sbjct: 121 TIDAELTNRKIDVIEEGVDFLFQITEQ-HDPKLQSYSLVTASRLLMASPTYLKRHGTPQI 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H  I               +   ++ +     + L+VN+     +  + G GI 
Sbjct: 180 PQDLMLHTAIKLQSAHINGGWR---IFDGNQWLDLDPPAQLKVNNVTFAREAAIEGLGIT 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +P +I +   D+  L+ I+ED       V   +P+ +    K + F  F++   
Sbjct: 237 AVPVFIAQEAIDSKQLIPILEDFPMMQTKVTLSFPQRVYLPRKYRVFVEFLYAAL 291


>gi|296115297|ref|ZP_06833936.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978120|gb|EFG84859.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 306

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + VF     +G F+ AAE+L LS+S++ + ++ LE  +  +LF R  R LTLT
Sbjct: 1   MHHRLENISVFVEAVEAGGFSRAAERLGLSRSAVGKAVARLEERLDARLFNRTTRVLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   +        +L + +  L        GK+R++  I  G++ +   L E    YP
Sbjct: 61  EEGQIYYDKCRRALKELRSGEELLHAGRTDVVGKVRMSMPILFGRHCVTPILLELARQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L   +  +D+  +  D AIR       S L  RK+ + +    AAP Y     +P
Sbjct: 121 NLDLDLRFSDLLVDVIGEGFDLAIRQGPIADGSGLRIRKICSQNKIICAAPSYFSERAKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
            +I +L+ H+ + +     +    F W L  +D  +   ++   LQ ++  +I+   V G
Sbjct: 181 QTIHDLEMHDALVY----WRSNRLFPWQLRDLDGNLQNCKLKWRLQFDNLEAIVDAAVAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIA LPD++++ +     L+ +++   + +   +  +PE      +L+   + +  K 
Sbjct: 237 LGIAWLPDWLIRPHLNEGRLLSLLDGFPSTAVDTFAVWPETPTLPKRLRVIVDTLAEKL 295


>gi|190574442|ref|YP_001972287.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190012364|emb|CAQ45992.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 343

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSF  AA++L + +S++SR +  LE+++G++LF R  R  TLT +G      
Sbjct: 29  AFIAVASEGSFARAADRLGIGRSAVSRSVQKLESQLGVRLFLRTTRSTTLTREGELFLEG 88

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            +     +     E+++     P G LRI+ +   G+ ++   L  F   YP + ++L+L
Sbjct: 89  CNPGVTCILQALEEMRDLREGPPRGHLRISASHGFGRRVIAPLLAAFRAEYPQVSVELLL 148

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D +  D++ D  D A R    ++ S +I ++LV + +    +P Y++    P+S+  L  
Sbjct: 149 DEQAPDLAGDRIDVAFR-DGLLEDSQVIAKQLVPMQLVVCVSPAYVQAYGLPVSVDALST 207

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  I  G  +P               +     + L  N    ++Q  + G GIA LP Y 
Sbjct: 208 HACI--GRRLPGGRMQPWEFRVDGAEVHLQPPAALVFNDADLVLQAVIDGLGIAQLPSYQ 265

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           V++      +V  ++         Y CY    +   +++AF +F   + R  + 
Sbjct: 266 VREALWAGRVVTCLDRHAPLDRGHYLCYLSRRQLPKRVRAFIDFSTQRVRALEL 319


>gi|238792798|ref|ZP_04636429.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           intermedia ATCC 29909]
 gi|238727906|gb|EEQ19429.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia
           intermedia ATCC 29909]
          Length = 305

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 124/287 (43%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT  G     
Sbjct: 8   EVFVAIVERGSMIAAAEALEMSRAMVTRYLAEMEQWAGARLLHRTTRKLSLTHAGETTLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +   + S +  G LRI+ +  LGQ+ L   + ++L  YP + + L +
Sbjct: 68  RCRRMLEFAQDMDVIEGQGSDELRGLLRISCSQSLGQSALVIAVTDYLRRYPQVAVDLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L T H    A+P YL     P +  +L  
Sbjct: 128 NNRAVNLVEERIDLALRITNEL-DPNLIARPLSTCHSVVCASPAYLSAKGIPKTPYDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K +  F+                L  N  + ++   + G+GI L P Y 
Sbjct: 187 HNCLTYS-YFGKSLWHFDLQ---GEKSAVAVSGNLSANESVVLLSGALEGAGITLQPSYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                   +LV ++      +  +Y  Y    +    L+   +F+  
Sbjct: 243 AAPYIARGDLVSLLPGYQPQAMGIYGIYTSRRQMPATLRTMLDFLVE 289


>gi|197336325|ref|YP_002156510.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197317815|gb|ACH67262.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 291

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 141/291 (48%), Gaps = 9/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  V  +GS+T A+ +  +  ++I+R+I  LE  + I+L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRQVVENGSYTAASRKTLIPVATITRRIQALEDSLDIRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K +   + +   L  T   L E     +GKL+IA   +L + ++Q  L +F+LLYPDI
Sbjct: 61  GQKFYDECAPILATLVNTSEYLGEECRGAAGKLKIAAPSNLTKRMIQPILNKFMLLYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L + N+   +     D   R+ K  + SSLI R++ ++     A+P YL+   EP  
Sbjct: 121 SINLTMSNQPEQLDPTDWDIIFRVGKQ-RDSSLIARQIGSLEDILVASPTYLEKNSEPTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QEL KH+L+    L+   + + +        +        + +    I   C  G GI 
Sbjct: 180 AQELHKHSLLKGNPLMRWRLTNRD-----GESVTITDAGRFEASELNVIRMACSNGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L+PD ++    +  +L+R++ D       +Y  Y        K++ F +F+
Sbjct: 235 LMPDIMISQYLEEGSLIRVLSDWSANPRDIYMIYNYKDHQPEKVRLFIDFV 285


>gi|188532592|ref|YP_001906389.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188027634|emb|CAO95484.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 300

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 140/298 (46%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++LR +  V  SGS T AA+QL+ + S ISR +  LE+++   L +R  R + L+
Sbjct: 1   MKITLEELRAWVTVVDSGSITAAADQLNQTTSGISRALGRLESKLQTTLLHRTTRRIALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   ++   +E  + ++      PSG+LR+        + +   + EF   +P
Sbjct: 61  EEGQIFLQHARQIIRSVEAAEEQIARRREIPSGRLRVNAATPFMLHAIVPLIPEFSRRFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  D   ID+     D AIR+ + ++ S+L  R L +  +   A+P YL    EP
Sbjct: 121 LIQLELTSDEVVIDLLEQQTDIAIRIGE-LRDSTLHARALGSSRLRLMASPDYLAEYGEP 179

Query: 181 LSIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            ++ E L  H L+ F +L    +    W +  +    +P IS    +S  ++ Q  V G 
Sbjct: 180 HNVAELLANHRLLGFCNLEQHNIWPL-WHSEKELLHIKPTISA---SSGETLRQLAVNGM 235

Query: 240 GIALLPDYIVKDN---PNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  + D++ + +     LV ++E         ++  Y      + ++  F +++  +
Sbjct: 236 GIVRISDFLSRADLASGRLVPVLESQTHEMRHPIHAVYYRNSTLSARISCFLDYLSEQ 293


>gi|308050661|ref|YP_003914227.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632851|gb|ADN77153.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 313

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 129/297 (43%), Gaps = 9/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V R+  F+ AA +L +S+S +S  +S LE ++G++L  R  R L+LTE G 
Sbjct: 5   LEPIVIFTHVVRAQGFSAAARKLGISKSKVSSHVSFLEQQLGVQLVQRTTRSLSLTESGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+     +   L+     +Q    +  G LR+  T   G   L   +  F+  +P +++
Sbjct: 65  LLYEHGEGILKDLDQAVAGVQALQQEIRGVLRVGITQAFGSMHLMPLIPAFMEQHPALEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D+  +  D  + + + +    ++ R L+       A+P YL     P    
Sbjct: 125 ELSFLDHKVDVVAEGLDLLLTMSEQLP-LGMVARPLMNCRFILVASPDYLARRGVPYHPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L +HN + +     +  E   W         E R+    +V+   ++      G G+  
Sbjct: 184 ALAEHNCLVYKS---EWYEHGAWEFARGEETCEIRVKGNYRVDDAPALKDAAKRGLGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L  Y+++D      L+ ++ D  +T    +   YP       K++AF +F+    RD
Sbjct: 241 LATYLLEDELAKGELIELLPDWKLTHPLALQAVYPRRKNLAPKVRAFIDFVRGHFRD 297


>gi|170697670|ref|ZP_02888758.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137418|gb|EDT05658.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 309

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT 
Sbjct: 1   MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  + +      +       G+L +     + + ++   L      YP 
Sbjct: 61  DGALLLERGRRLLAEADELDRLFRRRDRDVVGRLNVDAPSRIARRVIAPALPSLFRRYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P 
Sbjct: 121 LQLSLGSTDRVIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFALINCASPDYLRECGVPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               L   H  I +    P    +  W    D       + S + VN+  + +  C+ G 
Sbjct: 180 HPDALAHGHWAIGYAS--PTTGRELGWEYCADGGQHTLALPSRVIVNNAETYIASCIAGL 237

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +P + V    D+  LV +M         V   YP     + +L AF  +
Sbjct: 238 GLIQIPRFDVVHLLDSGALVEVMPGHRAAPMDVSAVYPHRRHRSRRLNAFIEW 290


>gi|294679149|ref|YP_003579759.1| LysR family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294477965|gb|ADE87352.1| transcriptional regulator, LysR family [Rhodobacter capsulatus SB
           1003]
          Length = 297

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 122/288 (42%), Gaps = 6/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VA   SFT AA +L  SQS++S  +  LE  + ++L  R  R +++TE G +L
Sbjct: 8   DLIAFLAVAEERSFTRAAARLGTSQSAVSAVVRRLEERLDVRLLTRTTRSVSVTEAGQRL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                  +  +E     L +   +P G +R+  +    + ++       +  YP++++++
Sbjct: 68  VDALRPAFDGIEAELAALDDIRARPQGMIRLTASRHAAERIVMPVANRLMADYPEVRVEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +LD + +DI+ +  D  IRL + +    +  R    + M    +P Y      P + Q+L
Sbjct: 128 LLDQRFVDIAKEGFDAGIRLGESVDRDMIGVRISGDLQMVVAGSPAYFARHPAPQTPQDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG-IALL 244
             HN I     +P     + W    D RP+          N     +   +   G + L+
Sbjct: 188 TAHNCINL--RLPTLGGLYAWEFEKDGRPLTVRVEGQFTTNDPELAVAAALEDRGLVCLM 245

Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            DY+     +  LVR++ D   P    +  YP   + T   +   + +
Sbjct: 246 TDYLAPHLASGRLVRVLADWCPPFSGYHLYYPSRRQITPAFRLLIDAL 293


>gi|307947169|ref|ZP_07662504.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307770833|gb|EFO30059.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 317

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 127/292 (43%), Gaps = 8/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R F  V   G+ + AA  L +S +  S +IS LE  + ++LF R  R L+ TEQG+
Sbjct: 4   LENIRTFIRVYELGNMSAAARDLRISSAVASSRISQLEEHLNVRLFQRTTRALSPTEQGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   +E  + E+   + +P G L IA  I LGQ  L   +  F    P I I
Sbjct: 64  LFYNGAVKIIDAVEEAEAEISNVTRQPRGTLFIAAPIGLGQRFLAPLIPLFKNDNPLIDI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +D++ +  D A  L  P + SSL  RK+        A+P YL+    P + +
Sbjct: 124 RLRLSDRKVDLAGEGLDAAFFLGVP-EDSSLRIRKVADCDRVLCASPAYLERKGVPKTSE 182

Query: 185 ELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL    H+ +      P   E    L +             + +    +  + + G GI 
Sbjct: 183 ELVDGTHDCLNI--RYPGAPEFQWMLQSQSGVKKVAVRGPFESDHGDVLTSWALDGHGII 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L P + V ++     L  ++E+       + F Y        K++ F +F+ 
Sbjct: 241 LKPVFEVAEHLSNGALRTVLENEPPVPVQMAFLYTHKKYQDPKVRLFIDFVV 292


>gi|198243188|ref|YP_002215467.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197937704|gb|ACH75037.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326623215|gb|EGE29560.1| Regulatory protein LysR [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 301

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++       +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNHF-YDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|157373809|ref|YP_001472409.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157316183|gb|ABV35281.1| putative transcriptional regulator, LysR family [Shewanella
           sediminis HAW-EB3]
          Length = 312

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 134/304 (44%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L LS ++++ ++  LE   GIKL  R  R ++LT+
Sbjct: 1   MDKFSDMEMFASIVKHQGLAAAGRELGLSPATMTARLQALEERYGIKLLNRSTRHISLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+   +  T+  LQ+   +  G L+I+   D+G+  +   L EF+  YP+
Sbjct: 61  SGDLYHKACLEILDSVRGTENLLQKGVKEVKGSLKISAPKDVGKQYILPILSEFVERYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +I+    D  IR  + +  S+LI R+L +      A+P YL     PL
Sbjct: 121 VTPYLYLNDHLSNIAESGIDVVIRYGE-LADSNLILRRLASSRRVLCASPEYLVKKGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           + Q+L  H+ +    +I    E   W   ++       +   +  +    I ++ + G+G
Sbjct: 180 TPQDLAGHDCLA---MIRSHEELKTWHFQLNEQRKSVTVVPKRFSDDGEVIRRWALEGAG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+   +   LV ++   +          S  +   Y        +++ F +F
Sbjct: 237 IALKSLIDVQVDINERRLVTVLNGYMKNFDTSTSMSSTNLNVVYMSRQYQPKRIRLFLDF 296

Query: 290 IFLK 293
           +F K
Sbjct: 297 LFEK 300


>gi|149188711|ref|ZP_01867002.1| regulatory protein, LysR [Vibrio shilonii AK1]
 gi|148837372|gb|EDL54318.1| regulatory protein, LysR [Vibrio shilonii AK1]
          Length = 296

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 135/300 (45%), Gaps = 12/300 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     +R F      GSFT A++QL +S+S +SR I  LE  +G +L  R  + L+LT
Sbjct: 1   MNL-LTLMRSFISTVEEGSFTGASKQLGVSKSLVSRNIRDLENHLGTRLMNRSTKTLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +  ++ +  KL+T    ++  SV  SG L +     L + +L   + EF   YP
Sbjct: 60  DAGKHYYLESNILVTKLDTLNDSIRHDSVAMSGTLNVLAPNGLTEIMLMPFICEFCTRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++++ L+LD+   DIS    D AIR    + Q   L+  KL        A+P YL+N   
Sbjct: 120 EVKVNLLLDDGVNDISSQGYDVAIRSGNLVKQDLDLVATKLTENQCIVCASPQYLQNHEP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L   +L  H ++   +L    +  F            P IS   VNS  +I    +   
Sbjct: 180 ILHPTDLLSHRVVEDPNLKNYSLWRFRKGIEEHDIEVSPSIS---VNSVQAIKVALLNHF 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN----FIFL 292
           G+A+LP  + K    +  L+ ++      +  VY  Y E +    K+K F      F+ L
Sbjct: 237 GVAMLPRQLAKKEIIDGKLIEVLSHYQLQNRAVYALYRERVNTPRKVKTFIEELRAFLML 296


>gi|146311770|ref|YP_001176844.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145318646|gb|ABP60793.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 294

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 126/288 (43%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA +L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAARRLGLAQSGVSRSVRDLEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++     +  L+     L      PSG +RI  +       L   L      YPDI+
Sbjct: 66  EQLYQTAESGFDALDRGFSTLAHYRQTPSGTVRINASQHAIDKCLLPKLAVIKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ +++ +DI  +  D  +RL   + +  +  R    + M   A P + +    P + 
Sbjct: 126 LELMNESRFVDIIAERFDAGVRLGPEVGNGMIAVRITPDMEMAVVATPDHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +        +    LA   + I          +      Q   LG G+A 
Sbjct: 186 ADLVIHPCIAYQFGDGSLYQWE--LAHDGKKIMHRPQGQWVFSDSYMEAQAARLGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  ++ D+     L+R+M+        ++  YP     +  L+   +
Sbjct: 244 VPVELIADDLERGTLIRVMQRYSLRMDGLFLYYPH-RNVSPALRIVID 290


>gi|187919630|ref|YP_001888661.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718068|gb|ACD19291.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 318

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  +  + SFT AAE L++ +++ +  +  LE  +G  L  R  R L++T +G+  
Sbjct: 7   AMRTFIRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTVLLARTTRRLSVTPEGAAY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +++   ++  +  ++ ++   +G+LRI     +   ++   L +F   YP++ + +
Sbjct: 67  YERCTQILADIDEMEASIRHATDNLTGRLRIEMPGAVASAIVLPALDDFHTRYPNLDLAI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+ +D+  +  DC+I+L + +  S+L+ R+L T+     A+P YL     P  + +L
Sbjct: 127 GISNRTVDLITEAIDCSIQLGE-LPDSNLVARQLGTLEHVTCASPAYLARYGTPTDLDDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIALLP 245
             H+ +    + P    + ++   V+      ++     V+   + +   + G G+ + P
Sbjct: 186 RGHSAV--NCMSPHNGREVDFDFEVNGEAQNVKVKGFVKVSDEQAYLTCGLQGLGL-IQP 242

Query: 246 DYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             I      D+  L  +M         V   Y +  + + +++AF +++  
Sbjct: 243 ARIAAQPYLDSGLLREVMPQWKPVPMPVSVAYVKNRRVSPRVRAFVDWLAE 293


>gi|217422609|ref|ZP_03454112.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217394840|gb|EEC34859.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 307

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 126/296 (42%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE E+G  L  R  R L +TE
Sbjct: 12  DVNLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEIGASLVVRTTRRLNVTE 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    ET    +   +    G LR++  +D G  ++   L      +P 
Sbjct: 72  AGRAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPA 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P 
Sbjct: 132 LEIELQCDDRVVDLVRDNLDVAIRLGR-LADSNHRAAKLGGFERWLVASPAFVARHGAPA 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L     +    +    +E  N  A  +R     R      N+  +     + G G 
Sbjct: 191 SPEALGALPYVMLSTVPRTTLELAN--AHGERASVRCR-RAFASNTATACRAAVLAGGGF 247

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +   +   D+     LVR++     P   ++  +P A   + K++A  + +  + 
Sbjct: 248 GVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRALIDMLKTRL 303


>gi|330810905|ref|YP_004355367.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379013|gb|AEA70363.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 307

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 118/292 (40%), Gaps = 4/292 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F   A  GSF  AA +L ++ +++ + ++ LE  +G++LF R  R L LTE G 
Sbjct: 4   FNSIECFVRSAEVGSFAEAARRLSVTPAAVGKSVAKLEARMGVRLFQRSTRSLRLTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    ++ ++     L  +  +P+G L+++     G+  +   L EFL  YP I  
Sbjct: 64  LFLGEVGSSFNTIQNAVANLASAGGQPAGTLKVSMGTAFGRLYVVPLLGEFLRRYPAINP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+     D AI     +    ++ RKL   H    A+  YL+        +
Sbjct: 124 DWHFDNRQVDLIGQGFDAAIGGGFELP-QGVVARKLTVAHRVLVASTDYLQAHAAVTEPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I         +  +   +           + + ++   +       G GI L+
Sbjct: 183 DLSLHQGILIRSPQTGRVRSWQLTSRNREHSPLTLKTRMTMSDSEADCAAAAQGLGIGLV 242

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              I     +N  L R++ D       +   Y E     GK +AF +FI  +
Sbjct: 243 SMPIAVPFLENGTLQRVLPDWYVDDGNISIYYAEHKLLPGKTRAFVDFIIEQ 294


>gi|254420470|ref|ZP_05034194.1| hypothetical protein BBAL3_2780 [Brevundimonas sp. BAL3]
 gi|196186647|gb|EDX81623.1| hypothetical protein BBAL3_2780 [Brevundimonas sp. BAL3]
          Length = 298

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 123/290 (42%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +L  F  V    SF  AA +L +S S++SR I  LE  +G++L  R  R +  TE G
Sbjct: 5   EFAELTAFMAVFDDRSFRKAATRLGVSPSALSRTIRALEDRLGVRLLNRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L         +L++   E      +P G +R+       + +L     EF + YPDI+
Sbjct: 65  LALVDRMRPAMAELDSAVQEAGARQGQPRGLVRLNLPRIAARLILTPLFAEFFVAYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L++D+   D+     D  IR    +    +  R    + M   A+P Y      P + 
Sbjct: 125 FDLVIDDSLTDVVARGFDAGIRSGALVHQDMIALRLTPDLRMAVVASPDYFSRRPPPRTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  +T+       +  +      D PI     + + VN    I+   + G G+A 
Sbjct: 185 RDLHDHVGVTYRWSETGALYRWV-FEGPDGPIEMDIKNRITVNETDLILAAALEGVGVAF 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+  +        LVR++ED   P    +  YP   +    L+AF +F+
Sbjct: 244 LPESFIAPWLQTGELVRVLEDWCKPFPGFHLYYPSRRQMPEALRAFIDFV 293


>gi|146311695|ref|YP_001176769.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145318571|gb|ABP60718.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 297

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 62/285 (21%), Positives = 121/285 (42%), Gaps = 9/285 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E   G +L +R  R LTLT  G K+  
Sbjct: 8   QVYNRICELGSLSAAARALGISRPMVSRYLEQMEKWAGTRLVHRSTRKLTLTPAGEKVLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +  +   Q +   P+G LR+A        ++   L +FL  YP +++++ +
Sbjct: 68  KVRNIIQLAQEIED--QSAKDVPAGTLRVACAHFTAMQIVAPMLPDFLSRYPQLRVEMDV 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N  + +  +  D AIR+    +   +I R+L        A+P YL +   P SI +L  
Sbjct: 126 NNHPVSLVGERIDVAIRITDNPE-PGMIARRLGECCSVLCASPAYLADKGHPQSIDDLAG 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN + +        + ++ +      +       L  +    +M+  +   GIA+LP+  
Sbjct: 185 HNCLHYSFF---AGQSWSLVTEEGDVVTAAVSGNLSASISSLLMEAAINDCGIAMLPELE 241

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +    +  LV ++         +Y  Y         L+ F + +
Sbjct: 242 AQSALSSGALVPVLPAFTPKPIAIYGIYLSRDYQPAALRVFLDAL 286


>gi|67643828|ref|ZP_00442571.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121601579|ref|YP_992292.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|166999975|ref|ZP_02265804.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254175662|ref|ZP_04882322.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254202238|ref|ZP_04908601.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254207571|ref|ZP_04913921.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|121230389|gb|ABM52907.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|147746485|gb|EDK53562.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147751465|gb|EDK58532.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|160696706|gb|EDP86676.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|238525268|gb|EEP88696.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243064090|gb|EES46276.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 317

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 126/297 (42%), Gaps = 17/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E       P G++RI + +  G++ L   L EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHG-ATPQGRVRINSHVPFGKHHLMPLLPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +  +D   + +D AIR    +  S L+ RKL    M    AP YL+    P +  
Sbjct: 126 DIVLSDSLVDPLDERSDIAIRSGA-LDDSRLVMRKLGGSRMVVVGAPAYLERNGVPATPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+HN I                   +     P    L +    SI +  V G G+A  
Sbjct: 185 DLDRHNCIGLSGNAKAWP-----FVAEEGQRLLPSAGNLLLGDNESIREAAVSGLGLA-- 237

Query: 245 PDYIVK---DNPNLVRIMEDVIT-PSFTVYFCY--PEALKNTGKLKAFRNFIFLKAR 295
             + V    D   LV ++E         +   +  P       ++ A  +F+  + R
Sbjct: 238 -RFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSE-HLPMRVHALLDFLKERIR 292


>gi|99078453|ref|YP_611711.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035591|gb|ABF62449.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 304

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 128/292 (43%), Gaps = 8/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R F  V   G+ + AA  + +S +  S +IS LE  + ++LF R  R L  TEQG 
Sbjct: 4   LNNIRTFVRVYELGNMSAAARDMRISAAVASSRISQLEEHLKVRLFQRTTRLLHPTEQGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   +E  + ++   +  P G L +A  + LGQ L+   + +F   YP I I
Sbjct: 64  LFYHGAVKILEAVEEAEADISNVTQTPRGTLYVAAPLGLGQRLIAPAVPQFNAAYPLINI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +D++ +  D A  L  P + S+L  RK+        AAP YLK    P S  
Sbjct: 124 RLRLSDRKLDLAAEGLDAAFFLGLP-EDSNLKIRKITDCPRVLCAAPAYLKARGTPTSSA 182

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL  D H+ +      P   E    L   D           + +    + Q+ + G GI 
Sbjct: 183 ELKTDAHDCLNL--RYPGAPEFQWPLHGPDGLRRVAVTGPFESDHGDVLTQWALDGHGII 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L P + + ++     LV ++ D    +  +   Y        K++ F +F+ 
Sbjct: 241 LKPVFEISEHLASGRLVPVLPDEPPATIQMACLYMHRRHQDPKVRLFLDFMV 292


>gi|325522799|gb|EGD01277.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 237

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 7/243 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F     +GSFT AA+QL LS+  +SR+   LE  +G++L +R+ R L +TE 
Sbjct: 1   MELNDLRIFVATVDAGSFTAAADQLMLSKQFVSRRTMALEASLGVRLLHRNTRNLAVTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +  ++   +  +   S +  G L+I+  +  G   L   + EFL  +P +
Sbjct: 61  GQEFYARAQRILAEVADAEQAMSVRSTELHGSLKISAPLSFGITHLSPLIAEFLSAHPAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ +D+  +  D  +R+   ++ S+LI R L    M A A+P YLK    P +
Sbjct: 121 RLNLDLTDRRVDLIGEGFDLVLRIGA-LEDSTLIARPLGAWRMIACASPAYLKRHGAPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             EL  H  + +G           W   VD       +   L  N+   +    + G GI
Sbjct: 180 PAELANHTCLLYGRE-----RRVGWEFRVDGAARTFDVQGPLVANNGEVVRDAAIAGLGI 234

Query: 242 ALL 244
           ALL
Sbjct: 235 ALL 237


>gi|293604850|ref|ZP_06687247.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292816678|gb|EFF75762.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 303

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 127/292 (43%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ AAE L + +++++  +  +E  +G +L  R  R + LT 
Sbjct: 1   MDRFQEMQVFVRIAERRSFSQAAEDLRIPRATVTNLVKRMEKRLGARLLERTTRQVRLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   LE         +  P G LR+     L +  +   L  FL  YPD
Sbjct: 61  DGETYYQRCVRLLADLEEADGAF--LNTAPKGLLRVNAQGTLAKYFVMPGLPAFLERYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L  D++ +D+  +  DC +R    +Q SSL  R++  +     A+P YL     P 
Sbjct: 119 IVLHLGEDDRLVDLVREGVDCVLRSGA-LQDSSLAGRQIALMPQVTVASPAYLARFGVPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H  + +           +++    R +     S + V+         + G G+
Sbjct: 178 SLDDLAAHRAVDYISSATGRALPLDFMVD-GRNVTARPASVVSVSGAELYTSAALAGLGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +P Y V+      +L  ++  +      V   YP+  + + +++ F  ++
Sbjct: 237 AQVPRYRVERELAAGHLRIVLPAMPPEPMPVSVLYPQNRQVSARVRVFTQWL 288


>gi|302188432|ref|ZP_07265105.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae 642]
          Length = 315

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 13/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILASVEEAEAEASDAHARPAGQLKMHSMPGVGQHYVIDAIARYRRNHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K      
Sbjct: 121 VAFDLTMTHRVPDLLEEGYDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
              +L  H  +    L+        WL   D P G+  +    S L VNS  ++      
Sbjct: 181 KPADLLNHACL---RLVSPVFPLDKWLF--DGPEGQEMVTINSSPLLVNSADAMKTAISS 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI +LP Y   +   N  LVR++ D  +    +Y  YP       K++ +  ++
Sbjct: 236 GMGIGILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPSRQYLDAKIRTWVEYL 291


>gi|117922034|ref|YP_871226.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614366|gb|ABK49820.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 293

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 135/295 (45%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L++   V  SG F+ AAE L +  + +SR ++ LE+++ + L  R  R + LT +G  
Sbjct: 6   DDLQILLTVVDSGGFSAAAEALDIQVARVSRAVTKLESQLQVTLLNRTTRRVELTNEGRL 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      ++  + EL     +P GKLR+        + +   + EF  LYP+I+++
Sbjct: 66  FVDAVRLGLQTIQLAEEELMSRGEQPKGKLRVDAASPFVLHQIVPLVHEFKQLYPEIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    +H  A+  YL     P S+ E
Sbjct: 126 LTSNEGFVDLIEKRTDVAIRIGK-LTDSTLHARPLGKSKLHIVASKEYLAKRGLPKSVSE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H+LI F             L T+        +  ++ ++  ++ Q  + G+GIA L 
Sbjct: 185 LNHHSLIGFTGAKVLNQWPLKGLETI--------VPTMRASNGETVRQLALAGNGIACLS 236

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++V D+     L+ ++E+    +     V   Y +A     ++ AF +FI  + 
Sbjct: 237 GFMVSDDIASGRLLPLLENERVANIEREQVNAVYYKASTVARRISAFIDFIQPRL 291


>gi|300715148|ref|YP_003739951.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299060984|emb|CAX58091.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 303

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 126/288 (43%), Gaps = 5/288 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F +VA   SF  AA++L LS S++S  +  LE ++ ++L +R  R ++ TE G
Sbjct: 6   DLSALQAFVLVATRRSFRQAADELGLSPSTLSHMLRALEEKMAVRLLHRTTRSVSTTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      V   LE+    ++    +P+G LRI  +    + LLQ  +  FL  YP I 
Sbjct: 66  EQLLNQLKPVLQGLESALSSVEAFRQQPTGTLRINASESAARQLLQRVVPLFLQRYPAIS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++ + + IDI  +  D  +RL + +    +       +   A A+P Y+    EP + 
Sbjct: 126 LDVVTEGRLIDIVSEQFDAGVRLLEDVPQDMVAVPFGGDLRFIAVASPAYVAKSGEPATP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I F     K          V+R I       L ++    +++    G GIA 
Sbjct: 186 DDLLTHQCIRFRLPSGKLYRWEFSRRGVERHIEVK--GTLMLDHLELMVESAAQGLGIAY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  + +    +  L  ++E+   PS  +   YP        L AF  
Sbjct: 244 VPSSVAEPWLQSGKLQIVLEEWSPPSPGLALYYPGHRHVPAVLSAFIE 291


>gi|296160294|ref|ZP_06843112.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295889505|gb|EFG69305.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 309

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 134/296 (45%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  +  + S+T AA+ L LS+S++S++I+ LET +G+ L  R  R + +TE G 
Sbjct: 7   LASMAIFAKIVETNSYTEAAKLLGLSKSAVSKEINRLETGLGVTLLKRTTRKIEVTEIGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   + +  ++      +++   +P G LR+   +  G   +   L  F+     +Q+
Sbjct: 67  TYYEYCARLLAEVRGADAFVRQYHEEPIGNLRVVAPMTFGNRAVLPALCRFISNNIHVQV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +D++    D AI + +     + +QR L  IH   YA+P YL +       +
Sbjct: 127 DLELTDRVVDLNDQNVDVAIVINRDKPEEATVQR-LAEIHWGIYASPTYLASHPPVQGPE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  + FG           +     R +       L+ N+ ++++   + G GIA L
Sbjct: 186 DLSRHGFLLFGGPAHTTSLQLRY---GKRQLETRVRCVLRSNNSVALLYAAIDGIGIAYL 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y+ ++      L  ++    + +   Y  Y +    + +++ F       ARD+
Sbjct: 243 PRYVAREATAAGKLQPLLPGWTSETRVAYAAYRDDRYLSPRVRMFVQ---ELARDF 295


>gi|241764119|ref|ZP_04762155.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241366525|gb|EER61018.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 298

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 130/295 (44%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  V R GSFT AA  L +SQS++S  + GLE  +G++L  R  R +  TE G
Sbjct: 5   NFNDLIAFVTVTREGSFTKAAAVLGVSQSALSHTMRGLEERLGVRLLTRTTRSIAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + +++     + E   KP+G +RI+        +L   L + L  YPDI+
Sbjct: 65  ERLFQSIAPRFEEIDAELTAVSEFRDKPAGAIRISAAEHAAITVLYPKLSKVLPDYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            ++ +D    DI     D  +RL   +    +  R    + M    +P Y     +P + 
Sbjct: 125 AEINIDYALTDIVAQRYDAGVRLGDQVAKDMIAVRIGPDLRMAVVGSPAYFSARNQPRNP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  HN I     +P     + W  +  R     R+      NS   +++  + G G+A
Sbjct: 185 HDLADHNCI--NRRLPTYGGIYAWELSNGRQELNVRVEGQWVFNSSSPVLRAALDGCGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LP+ +V ++     L+R+++    P    +  Y    + +  L+     +   A
Sbjct: 243 FLPEDMVLEHIAAGRLIRVLDAWCQPFPGYHLYYANRRQFSPVLQVIVEALRHSA 297


>gi|329113966|ref|ZP_08242733.1| Putative HTH-type transcriptional regulator YcjZ [Acetobacter
           pomorum DM001]
 gi|326696713|gb|EGE48387.1| Putative HTH-type transcriptional regulator YcjZ [Acetobacter
           pomorum DM001]
          Length = 305

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 123/289 (42%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +L  F  VA+  SFT AA +  ++ S+IS  +  LE  +G+ L  R  R +  T  G
Sbjct: 14  NFSELLSFLAVAQERSFTKAAARRGVTPSAISHTMRLLEERLGVTLLTRTTRRVVPTPAG 73

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +    ++ ++E     L E    P G LRI  T +     L+  + +FL  YP+I 
Sbjct: 74  DYLLQNIQPLFDEIENRMSSLDEFRKCPRGNLRITVTDESLDFFLRPRIADFLKNYPEIS 133

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  D + IDI  +  D  +RL + +    +       I      +P Y KN   P + 
Sbjct: 134 LEISTDLRLIDIVDEGFDAGVRLGELVTQGMISVPVSPDIPFAVVGSPTYFKNHAIPKTP 193

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             L +HN I  G  +P   + + W      + +    +     N+       C+ G G+A
Sbjct: 194 VRLQEHNCI--GVRLPTHGKIYPWRFRQKGKDLKFQPVGQFICNNVFGARDACLDGIGLA 251

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P  + +++     L+ ++E         +  YP   +++  L  F  
Sbjct: 252 YIPKIVTEEHIQNGKLISVLEPFCPTHLGFHLFYPRHHRHSMPLSLFVE 300


>gi|167837659|ref|ZP_02464542.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 326

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  ++ +  +P G LR+A +  L    +   +  +   YP +++QL 
Sbjct: 67  DGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L    +D+     D  +     +  + +LI   L+   +   AAP Y++    P    +L
Sbjct: 127 LTEGPLDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAPHRPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I            F         +    +    VNS   +    + G+GI++LP+
Sbjct: 187 VRHACIALPAGQHSSTWRFVDPDHFTHVVSLQPV--YTVNSTSMVRAATLAGTGISVLPE 244

Query: 247 YIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
             + D   +  LVRI+ D     P   +   YP       + ++F  
Sbjct: 245 SYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVE 291


>gi|85713542|ref|ZP_01044532.1| Trancriptional regulatory protein, LysR family protein [Nitrobacter
           sp. Nb-311A]
 gi|85699446|gb|EAQ37313.1| Trancriptional regulatory protein, LysR family protein [Nitrobacter
           sp. Nb-311A]
          Length = 309

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 126/297 (42%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  AA  L + +S +SR+I+ LE  +G++L  R  R  ++T
Sbjct: 1   MMQDLNDLYYFVQVVDHGGFAAAARALGMPRSRLSRRIAALEERLGVRLIQRSTRRFSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +R    +  + +  Q  +  S  +P G +R++    L    +   +  F+   P
Sbjct: 61  EIGQDYYRHCVAMLVEADAAQELIDRSRSRPQGIVRVSCPPPLLYFQVGEMVARFMAECP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           D+++ L    + +D+  +  D A+R+R  P++ + L+ R L        A+P  LK  R+
Sbjct: 121 DVEVHLESTPRRVDVIAEGIDIALRVRFPPLEDNDLVMRVLAESTQRLVASPALLKGLRQ 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L     I +G   P   +++            P    L     +++    + G 
Sbjct: 181 PPIPADLAALPSIGWGP--PHQRQEWCLDGPDQATALIPHAPRLITGDMVALRFAALRGI 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+   P  +V+   D+  L+ ++      +  ++  +         ++A  +F+  +
Sbjct: 239 GVGQFPTMVVEADLDSGALLDVLPQWRPRAGIIHAVFSSRRGLLPSVRALLDFLAAE 295


>gi|1050749|emb|CAA61941.1| GSTR protein [Rhizobium leguminosarum]
          Length = 298

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 130/297 (43%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D + V   V   GS + A+  L    +++SR++S LE  +  +L  R  R +TLTE
Sbjct: 1   MDRLDAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRKITLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  ++E  +         P G+L +   I  G+  +   + +FL  YPD
Sbjct: 61  AGRSYVEAAREILDRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YLK    P 
Sbjct: 121 INLRLMLGDRLSNLVEDHIDVALRIGN-LPDSNLIATRLGAIRRTVYASPDYLKRNALPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ +TF  +       F       R +  P  S L VN+  +  +    G GI
Sbjct: 180 HPGDLAAHDCVTFEGMASMLSWTFT---EGKRDLTVPIRSRLAVNTAEARRRAV-AGLGI 235

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y      +   LV ++ D   P   V+  YP       KL+A  +F   + R
Sbjct: 236 TRVLSYQAAHAESADLLVPLLADFEPPPAPVHLVYPAQGLVPLKLRALLDFATPRLR 292


>gi|313201979|ref|YP_004040637.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441295|gb|ADQ85401.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 310

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 76/312 (24%), Positives = 135/312 (43%), Gaps = 18/312 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F      GS    A Q+ ++ ++ S+ I  LET +GI+L  R  R + LT+
Sbjct: 1   MDTLRSIETFVRAVEHGSIAAGARQIGITAAAASQNIQRLETTLGIRLLSRSTRSMALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   LE  +  + E   +P G+LRIA +   G+N++   +  F+  YP 
Sbjct: 61  AGQLYYNAVKDILRDLELAKSSITEFQGEPQGRLRIACSAAFGRNVIADMIPPFMRRYPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LI  +  ID   +  D +IR ++ ++   +I R +  + +   A+P YL     P 
Sbjct: 121 ISVELITTDNPIDHITENIDISIRFKQQLE-PGMIARHIARVPILFCASPDYLARAGRPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
             +EL  H  +TF   +P       W    D    EP I+  +  N   ++ +  V G+G
Sbjct: 180 QPEELSHHACLTF--RVPASGRMLGWGFLRDGLRFEPDITPTVNSNDIDALARLAVGGAG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVIT---------PSFTVYFCYPEALKNTGKLKAFRN 288
           IA L  ++ +   D+  L  +     T              Y  Y +    T KL+ F +
Sbjct: 238 IARLGAFVAQPLIDSGQLEALFTGNATTEGAVTADIEPLDFYVSYQDKHAMTHKLRVFVD 297

Query: 289 FIFLKA-RDWKF 299
           ++      +W+ 
Sbjct: 298 YLVELMPEEWRM 309


>gi|229588580|ref|YP_002870699.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360446|emb|CAY47303.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 303

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 61/291 (20%), Positives = 127/291 (43%), Gaps = 5/291 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  +  SG+ T AAE+L++++S++ + ++ LE  +G  L  R  R   LTE G 
Sbjct: 6   FDGVELFLQIVESGNLTEAAERLNVTRSAVGKGLARLEARLGTCLLQRSTRRQRLTEDGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        +LE  +  L+    +P G+LR +  +  G +     L   +  + +++I
Sbjct: 66  AYYEHCLRALAELEAAESVLESGRQQPRGRLRASLPLAFGHHYAAPALWGLMDRFAELEI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ ID++ +  D A+R+     +  L  R+L    +   A+P YL+   +   I+
Sbjct: 126 EISFSDRLIDVAQEGFDLAVRIGALPDTDRLSARRLGEQAIGLAASPAYLQRVGQIERIE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I +    P+     N      RP      S L ++   ++    + G G+A L
Sbjct: 186 DLAGHRGIAYRCSAPRLEWALN--DEQGRPHRARVASPLMMDDLQAVADAAIAGVGLAWL 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P +++        L  ++         ++  +P A     K +   + +  
Sbjct: 244 PSWLIAHYALRGQLQAVLPGYCEQPSPIHVIWPTAAHMPAKTRCAIDALVA 294


>gi|227818388|ref|YP_002822359.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227337387|gb|ACP21606.1| putative LysR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 301

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 11/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +D +  F   A +GS + A+ +L L++S +S +++ LE  +G KL  R  R L+LTE 
Sbjct: 2   IKFDGIAAFVATAEAGSISAASRRLGLAKSVVSERLAELERILGTKLIQRTTRKLSLTEN 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  + +    EL   S K +G LR++  +  G   L   L +F+  +P I
Sbjct: 62  GQTFLPRAQRILREADEAAAELAARSGKLAGPLRLSAPVSFGILHLAPALTKFIQEHPQI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ + LD++ +D +    D  +R    I  S LI R+L T      A+P YL+    P S
Sbjct: 122 EVSVELDDRFVDAAAGGFDAVLRHGA-IGDSRLIARRLATSRRLLVASPAYLEREGHPAS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           I EL  H  I +       M + +W  + +      R  + L+ N+ L + +  + G GI
Sbjct: 181 IDELQHHCGILYS------MREGDWRFSTEHGWQVVRPKAALRANNGLVMREAAMAGLGI 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LLP + + +   +  LV I          ++  YP     + K++A  +
Sbjct: 235 TLLPTFFIHEAVKSGVLVPIDVGARAEGAELFITYPRDHGASAKIRALAD 284


>gi|283833523|ref|ZP_06353264.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291071191|gb|EFE09300.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 298

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 5/288 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L VF  VA +GSF  AA++L ++ S++S  +S LE  +G++L  R  R    TE+G+
Sbjct: 6   LSQLIVFITVAEAGSFRAAADRLGIAPSAVSHAVSALEASMGLRLLARTTRSTRPTEEGA 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    +    +++     + E +  PSG LR+   +   + ++   L  F   YP I++
Sbjct: 66  NLLSRVTGPLAEIKAGFSGVMEGAQAPSGPLRVTMPLLAAETIILPRLAAFSARYPAIEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +   DI     D  +RL + +++  +  R           AP Y     +P   +
Sbjct: 126 DIRASDIFEDIVESGCDAGLRLGENLEADMIAVRADTPRRSVIVGAPSYFAGNPKPAHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN I       +       LA   R I       L +     I Q  + G G+A L
Sbjct: 186 DLAGHNCIRRRFESGRVYRWE--LAHDGRAITVDVRGNLILPHQEHIRQAALAGVGLAFL 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +  V+++     LV +ME+        Y  YP   +    L+AF +F
Sbjct: 244 FEDRVREDLREGRLVTVMEEWCPWFDGFYIYYPSRRQMRPALRAFIDF 291


>gi|53729192|ref|ZP_00134043.2| COG0583: Transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 267

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 117/259 (45%), Gaps = 10/259 (3%)

Query: 35  SRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGK 94
           S+ I+ LE  + ++L +R  R +T TE G   ++    + ++L+  +  +   +    GK
Sbjct: 3   SKLIAQLEEHLNVRLLHRTTRKITPTEAGLLYYQRCLPILNELKDAENSVSNITSTLQGK 62

Query: 95  LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSS 154
           + I+  +D G   +   L +F+  YP+IQ+ +   ++ +D+  +  D  +R+   ++ SS
Sbjct: 63  ITISLPMDFGSRFVAPYLGQFMTTYPNIQLNIEFSDRRVDVVAEGYDLVLRIGA-LEDSS 121

Query: 155 LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP 214
           ++ +++    +   A+P YL     P ++ +L +H  + + +       D       D+ 
Sbjct: 122 IVAKRIARSELVLLASPEYLAKHGTPENLAQLTEHTCLIYENHQQWQFTD------GDQK 175

Query: 215 IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYF 271
           +     + +  N+  +++Q      GI  LP ++ K+      LV I+      S  +  
Sbjct: 176 VKIKPNAHVISNNGYALLQMTKAEQGIVNLPLFLAKEEISAGKLVEILPQYKQHSIDISI 235

Query: 272 CYPEALKNTGKLKAFRNFI 290
            YP     + K+K    F+
Sbjct: 236 LYPHRRYLSPKVKVLIEFL 254


>gi|330829338|ref|YP_004392290.1| LysR family transcriptional regulatory protein [Aeromonas veronii
           B565]
 gi|328804474|gb|AEB49673.1| LysR family transcriptional regulatory protein [Aeromonas veronii
           B565]
          Length = 311

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 134/297 (45%), Gaps = 7/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  V +   FT AA  L + +S ISR+I  LE  +  +L  R +R L+LT+ 
Sbjct: 6   LDLNDLYLFTHVVQRQGFTAAARALGVPKSRISRRIRLLEERLDTRLLQRTSRQLSLTDA 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R    +  + +  +  +++   +PSG +RI+  I +   LL   L  F+  YP +
Sbjct: 66  GEVLYRHCQAMLAEAQAGEAAVRQRQQEPSGLVRISVPITMADALLAPLLPAFMAQYPKV 125

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +   N+ +D+  +  D  IR +      SSL+Q  L T+     A P +L       
Sbjct: 126 RLAVQASNRQVDLLEEGLDVVIRGVAFEQAPSSLVQVPLCTVQWGVLATPAWLSRHNALA 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             ++L+  + + F  L  +   D  WL        E  ++  L+ ++  ++ Q  + G G
Sbjct: 186 HPRQLEGEDALLFSSLERQA--DLLWLRHDSGESEEVAVNVLLRSDNVQTLKQAALAGLG 243

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  LP Y   +   +  L +++ +       +   YP     +  ++A  +FI  + 
Sbjct: 244 MVGLPLYACVNELADGRLQQLLPEWRPKDGKLVMLYPARRGLSPAVRALIDFIKAQL 300


>gi|261251795|ref|ZP_05944369.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260938668|gb|EEX94656.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 303

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 137/297 (46%), Gaps = 10/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  SGSF+  A++L LS SS+SR I+ LE  +  KL  R  R + L+  G 
Sbjct: 10  LSEMAIFVNVVESGSFSKTAKKLGLSPSSVSRSITRLENALEEKLLERTTRQMRLSTTGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++ + +++ +  +      Q    + SG LR+A    L + +L   + +F+  YP++ +
Sbjct: 70  EVYSLCNDMMNSAKMAVSAAQADKSEVSGSLRVAAPKALSRQVLMPMILDFIETYPNVAL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + +  ID   D  D  I +     +  LI R L    +   A+P Y++    P+   
Sbjct: 130 QLKVADHYIDPIGDEVDVIIHITDK-PTEGLIARTLDECRLIMCASPSYIEQHGMPIHPD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++ +HN +  G+     + DF+      + +         VN      +  + G GI++ 
Sbjct: 189 DIAQHNCLCLGENPRDRVWDFS---HNLKKVSINVSGSFAVNHSEIRREAVIRGVGISVF 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P++ ++   D+  +V +++D          V   Y ++    G++K F  ++  + +
Sbjct: 246 PEFAIRSYIDSGEVVEVLKDWHVGGNYQGKVIAQYAQSKFIPGQIKTFVEYLQQRFQ 302


>gi|330967373|gb|EGH67633.1| transcriptional regulator, lysr family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 301

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 124/295 (42%), Gaps = 10/295 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  +A   SF+ AA  L +S S++S  + GLE+ + ++LF R  R + LTE G +L
Sbjct: 8   ELTAFVAIAEQRSFSGAARMLGVSPSALSHSMRGLESRLELRLFNRTTRSVALTEAGEQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +   LE    ++      PSG +R++ +    + L++  +  FL   P I I+ 
Sbjct: 68  FRRVQPLLGDLECAVNDVTSERNTPSGLIRLSASESSFKLLIRHVMPRFLKDNPQIHIEC 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQE 185
           + D + +DI  D  D  +RL   +    +  R    I   A A+P YL     P+ +  +
Sbjct: 128 VADTRLVDIVADGFDAGVRLFDDVPRDMIAVRFGPDIRFAAVASPEYLSRHPAPVNTPHD 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I F             L  + R         + +++   + +  + G GIA LP
Sbjct: 188 LKAHRCIRFRFASGTLFRWD--LDHLGRSASIDVDGPMTMDNINLMAEAALAGIGIAWLP 245

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           ++ V ++     LV ++ D           YP        L+ F        RDW
Sbjct: 246 EHQVAEHLQAGRLVHLLPDWGPRYTGACLYYPANRHPPMALRMF----AEALRDW 296


>gi|259907349|ref|YP_002647705.1| LysR-family transcriptional activator [Erwinia pyrifoliae Ep1/96]
 gi|224962971|emb|CAX54452.1| LysR-family transcriptional activator [Erwinia pyrifoliae Ep1/96]
 gi|283477171|emb|CAY73078.1| Uncharacterized HTH-type transcriptional regulator ycaN [Erwinia
           pyrifoliae DSM 12163]
          Length = 292

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 17/289 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F +VA  GSFT AA +  L +SS+S++IS LE  +GI+L  R  R L LT  G 
Sbjct: 5   LQDMALFALVAGCGSFTAAAVRAGLPKSSVSQRISQLEQALGIRLINRTTRQLNLTFAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    E   + ++     PSG+LRI +   +G  LL      F   YPD+ +
Sbjct: 65  RYLVHCQEMLQASERAGVVIERLRDNPSGRLRITSPAGIGATLLARVNTAFQHKYPDVTL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++  ++     D A+R  +P Q SSLI R++        A+P YL +       +
Sbjct: 125 EVSISDEMCNLVQSRFDVALRTGRP-QDSSLIGRRIGYCQRLLVASPDYLADYPALAHPR 183

Query: 185 ELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +L  H  I        L+ +  E + WL                 ++ +   +  +   G
Sbjct: 184 QLSDHRCIAHRAWNEWLLKRNEEYYRWLL----------PPTHMTDNLVYARECALSSGG 233

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I LLP ++  +   LV+++ +       ++  YP    N+  L  F +F
Sbjct: 234 ITLLPRFLSGE--KLVQVLPEWEVEGNELWLVYPGRKLNSPALSRFVDF 280


>gi|121586400|ref|ZP_01676188.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121549378|gb|EAX59407.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
          Length = 312

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA +L ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLATFIVVVNEGSFTAAASKLGVTPSALSKLITRLEQALSVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +           +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSLLMVNAAQQAIEISSSEHAEPAGALTVAAPEAFLNSVLQPFVVPFLAQYPHIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D A RL       +L+ R+L   ++   A+P YL     P+    L
Sbjct: 132 RAADGDIDLFKHNIDVAFRLTDK-PDENLVLRELCKTNLVLCASPEYLAQRGTPVHPTNL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +   +      +D  W     R      +S    VN     +       GI +  
Sbjct: 191 AEHDCLYLAE----TDKDHIWTFAKGRETHTVAVSGRYAVNQSQLRLTGVKNHLGIGIFH 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           D++V+D      +V+++++    S     +   Y +      +L+ F +F+  
Sbjct: 247 DFVVQDALRAGKVVQVLQEWNIKSNYHGAIAMQYAQTKYMPARLRVFIDFVLE 299


>gi|327192685|gb|EGE59623.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 304

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 134/289 (46%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E+G++L  R  R L+ T+ 
Sbjct: 2   LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSATDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +S+    +E   + L E+  +P+G +RI+  +  G + LQ  + + L  YP  
Sbjct: 62  GRLYYEESSQALRTIEGANLRLAEARAEPAGTIRISAPVGFGGHFLQDAIFDLLATYPKS 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++  +  D A R    ++ S+LI RKL + H    A+P YL     P  
Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRTG-ILEDSTLIARKLGSTHRLLCASPDYLARRGAPDR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H+ +  G            L         P       N   ++M   + G GIA
Sbjct: 181 PADLVRHDCVVAGQSTHAQW----LLEGPHGQETIPVSGRFAANEMQAVMAAAIAGYGIA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP  +      +  L R+++   TP   ++  YP +      +K F  
Sbjct: 237 RLPHGVANAYIRDGRLCRVLDGYTTPVGGLHVVYPSSRHLPPLVKTFIE 285


>gi|167579564|ref|ZP_02372438.1| LysR family regulatory protein [Burkholderia thailandensis TXDOH]
          Length = 320

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   +  +   Y D+ +++ 
Sbjct: 67  ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAQRYADVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPEYLAKHGTPTTIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ I      P        ++ V      P    + VN    +    + G+GIALL  
Sbjct: 187 QHHSFI---RREPNETLLDAAISDVAAASRVPLSGNVIVNHLEGLRVAVLDGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V ++     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFLADR 294


>gi|59802027|ref|YP_208739.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA
           1090]
 gi|194099598|ref|YP_002002729.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae NCCP11945]
 gi|239999798|ref|ZP_04719722.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae 35/02]
 gi|240014954|ref|ZP_04721867.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae DGI18]
 gi|240017402|ref|ZP_04723942.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae FA6140]
 gi|240081544|ref|ZP_04726087.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae FA19]
 gi|240113823|ref|ZP_04728313.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae MS11]
 gi|240116557|ref|ZP_04730619.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID18]
 gi|240118781|ref|ZP_04732843.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID1]
 gi|240122023|ref|ZP_04734985.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID24-1]
 gi|240124321|ref|ZP_04737277.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae PID332]
 gi|240126532|ref|ZP_04739418.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae SK-92-679]
 gi|240128994|ref|ZP_04741655.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae SK-93-1035]
 gi|254494580|ref|ZP_05107751.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|260439682|ref|ZP_05793498.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae DGI2]
 gi|268595608|ref|ZP_06129775.1| LysR family transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268597640|ref|ZP_06131807.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268599891|ref|ZP_06134058.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602226|ref|ZP_06136393.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268604492|ref|ZP_06138659.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268682947|ref|ZP_06149809.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268685112|ref|ZP_06151974.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687374|ref|ZP_06154236.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291042924|ref|ZP_06568665.1| LysR family transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|293398068|ref|ZP_06642273.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae F62]
 gi|59718922|gb|AAW90327.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae FA 1090]
 gi|193934888|gb|ACF30712.1| putative LysR-family transcriptional regulator [Neisseria
           gonorrhoeae NCCP11945]
 gi|226513620|gb|EEH62965.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|268548997|gb|EEZ44415.1| LysR family transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268551428|gb|EEZ46447.1| LysR family transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268584022|gb|EEZ48698.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586357|gb|EEZ51033.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588623|gb|EEZ53299.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268623231|gb|EEZ55631.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268625396|gb|EEZ57796.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627658|gb|EEZ60058.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291013358|gb|EFE05324.1| LysR family transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|291611331|gb|EFF40401.1| LysR-family transcriptional regulator [Neisseria gonorrhoeae F62]
 gi|317165087|gb|ADV08628.1| LysR family transcriptional regulator [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 303

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 137/289 (47%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF  V +SG FT AA+ L +S +  S+ +S LE  V  KL + ++R L+LTE G + +
Sbjct: 7   LKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTVQAKLLHHNSRNLSLTEAGEEYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  S     L+    +    + KP G LR+   +    + +   L E+   YP++ ++LI
Sbjct: 67  RQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWFAGSQICNWLAEYRERYPEVALELI 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D A+R+ + + S SLI R L  I     A+P +L+    P + +E+ 
Sbjct: 127 LDNRHVDLIAEGVDLALRVSQTL-SPSLIARPLAEIEFALLASPDFLRRNGVPETPEEVA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +       + ++      +  +         ++ ++ L + +    G+ I   P +
Sbjct: 186 GLPAVLPTYTNQQKLDLTR--KSDGKKYRLELTPVIRTDNTLMMREMIKAGACIGYQPLW 243

Query: 248 IVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + +     LVR++     P+  +   Y +    + K+++F +F+  K
Sbjct: 244 AAEHDLRCGPLVRLLPGYAVPTDRLNAVYADRAFLSAKVRSFIDFLNEK 292


>gi|28901377|ref|NP_801032.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835972|ref|ZP_01988639.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260362931|ref|ZP_05775800.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260880218|ref|ZP_05892573.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260895335|ref|ZP_05903831.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260901160|ref|ZP_05909555.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28809924|dbj|BAC62865.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149750726|gb|EDM61471.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308085643|gb|EFO35338.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092697|gb|EFO42392.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308109358|gb|EFO46898.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308112297|gb|EFO49837.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 309

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 10/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V   GSFT AA+QL ++ S++S+ I+ LE  + +KLF R  R L +T+ G K+
Sbjct: 12  DLASFILVVNEGSFTAAAKQLGVTPSALSKLITRLEQALNVKLFERTTRKLIITQAGQKV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  + +  +       E   +P+G L +A       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQSIAMVNAAQQAVELSAEEHAEPTGALTVAAPEAFLNSVLQPFVLPFLQRYPKIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+     D A +L       +L+ +++   ++   A+P YL     P    +L
Sbjct: 132 RAADGEIDLFRQGIDVAFKLTDK-PDENLVLKEISKTNLVLCASPDYLAQRGMPEHPTQL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++H+ I   +     +  F      +            VN     +     G GI +  D
Sbjct: 191 EQHDCIYLAENDKDNIWSF---FKEEAFHSIAVSGRYAVNHSQMRLNGVKAGLGIGIFHD 247

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFC---YPEALKNTGKLKAFRNFI 290
           ++VK   +   +V ++ D +  S         Y +      +L+ F  F+
Sbjct: 248 FVVKEALERGEVVEVLSDWMIKSNYHGAVAMQYAQTKYMPARLRVFIGFV 297


>gi|226228090|ref|YP_002762196.1| LysR family transcriptional regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226091281|dbj|BAH39726.1| LysR family transcriptional regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 304

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 122/293 (41%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ + D L VF  VA   S   A ++L ++ S++S+ +  LE  +G+ L  R  R   LT
Sbjct: 1   MTDELDSLTVFIAVAEQRSLRAAGDRLGVTGSAVSQSLRRLEDRLGVALVQRTTRSTRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L+         +      + E S +P G+LR+         L    L  FL  +P
Sbjct: 61  EVGQRLYASVRPALEDVRNALTAIGEMSEEPRGRLRLYAGGAADGFLSGSVLASFLFAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + +  +DI     D  I+L + I    +       + +     P Y+     P
Sbjct: 121 NIELDITVGDAPVDIVAGGFDAGIQLGEVIDRDMIAVPVSGDLRLVVVGTPSYVAQHGMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  + +          +      +R       S L       +++    G G
Sbjct: 181 QHPRDLASHACVNWHPSPDAPPYRWE-FTENERDFSVAVRSRLLTTDGTMLLRMVREGVG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+L D+ V+++     LV ++++  T     Y  YP+  + +  L+AF + +
Sbjct: 240 LAMLFDFHVQEDLAQGRLVPMLQEYCTAFPGFYLHYPQKRQASAALRAFIDHL 292


>gi|94312798|ref|YP_586007.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
 gi|93356650|gb|ABF10738.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
          Length = 289

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 123/292 (42%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V ++  F  AA+ L +  S++SR+IS LE  +G++L +R  R + LTE G 
Sbjct: 4   LNDMALFVEVVKAKGFRSAADVLDMPSSTLSRRISALEKAIGLRLLHRTTRKIELTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +         +L     +P G LR +  +D     L   + EF   YP +  
Sbjct: 64  IYFERCKRIVGDARLAHEQLGTMLAEPVGVLRASFPVDFAVTYLAPLIAEFAGRYPGLSF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
              L  + +D+  +  D AIR  +P + S LI R+L +   + YA+P Y+K   EP +  
Sbjct: 124 DFDLTPRRVDLVSEPFDVAIRAGEP-EVSQLIARQLASFRTYLYASPGYIKRAGEPRAPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  +         +       T+      P  S   +NS     +   L  GI L+
Sbjct: 183 DLNHHECLGIQRGGAWTLHRGEDTTTI------PVGSRFTLNSVGMARRLAALDMGIVLM 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + IV D+     L R+M +       VY    E      K + F  F+  +
Sbjct: 237 AEAIVADDLATGQLRRLMPEWQGTPVPVYAMT-ETRLLPAKTQRFIEFLRER 287


>gi|116253452|ref|YP_769290.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258100|emb|CAK09201.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 299

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 131/287 (45%), Gaps = 5/287 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F     +G F+ AAE+LHL++S++ + I+ LE  +G++LF R  R  +LTE+G 
Sbjct: 4   LKGISIFVEAVEAGGFSAAAERLHLTRSAVGKTIARLEQRLGVRLFNRTTRMQSLTEEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        ++   +  L+       G+LRI+  +  G++ +   L   L  +P++++
Sbjct: 64  FFYERCLRAVEEIRLGEAMLESGRRDVRGRLRISMPVLFGRHCIAPILARLLDEHPNLEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  +++ +D+  D  D  IR      +  L+ R +    M   AAP YL+    P ++ 
Sbjct: 124 DLSFNDRIVDLLEDGFDLVIRNGPLKDNPDLMVRAIARQRMTVCAAPAYLEKHGAPQTVF 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++ +H  I +          F       R +     + L+++   SI    V G G+A L
Sbjct: 184 DIPQHEGIVYRRGDDDKGWIFPTATDPGRRLAPK--ARLRLDDLASISDAAVAGRGLAWL 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P ++V++      L+++++      F  +  +  +     K++   +
Sbjct: 242 PCWLVREEVLAGRLIQVLKQEPANVFDAHAVWLRSPVMLPKVRLAID 288


>gi|78063287|ref|YP_373195.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971172|gb|ABB12551.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 313

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    E+    +   +    G LR++  ID G  ++   +      +P 
Sbjct: 66  AGRAFYDACRDIVRAAESALDAVSSDTGPLRGTLRVSVPIDYGALVVAPAVVALRDRHPG 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+ +++ +D+  D  D AIR+ + +  S+    +L T      A+P ++     P 
Sbjct: 126 LDVELVANDRVVDLVADNLDVAIRIGR-LADSNYRAVQLGTYEKWLVASPAFVARHGRPQ 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
               L     +    L      +   L  V+      R ++ +  N+  +     + G G
Sbjct: 185 DPDALAALPFVMLSTLPRPQTVE---LEDVNGGTASVRCVAQVVSNTATACRAIVLAGGG 241

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             LL D+   D+     LVR++    +    ++  YP     + K++AF + +  +
Sbjct: 242 FGLLTDFSTADDVAAGRLVRLLPAWRSAPAGIHAVYPSTRLPSPKVRAFVDAMKAR 297


>gi|319763439|ref|YP_004127376.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330824314|ref|YP_004387617.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317118000|gb|ADV00489.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329309686|gb|AEB84101.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 318

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 143/298 (47%), Gaps = 10/298 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  V R   F  AA++L  S + +S++I  LE E+G+ L +R  R + +T+QG +
Sbjct: 25  DDLRVFCTVVRKAGFAAAAQELAASPAYVSKRIRLLEQELGVPLLHRTTRRVAVTDQGER 84

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +   ++    E+  +  +P G LR++++   G+N++   L   +  +P +Q++
Sbjct: 85  VFHWAQRILDDMDQLLQEVAVTRREPRGLLRVSSSFGFGRNVVAPMLSRLVQRHPGLQVR 144

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R+L   H    AAP YL     P S  E
Sbjct: 145 LEVFDRLVDVAGEGFDLDVRVGDEI-APHLIARRLADNHRVLCAAPGYLARRGTPRSPAE 203

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ +   +              V++ +       L  N+   ++Q+ V G GIAL  
Sbjct: 204 LPAHDCLVIKERDHPFGVWRLRAGAVEQSVKV--TGPLSANNGEMVVQWAVDGCGIALRS 261

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
            + V    +   LV+++ +    +  ++  YP  L+ + K++    F+   F + R W
Sbjct: 262 LWDVGAHLEAGRLVQVLPEWRQEA-NIWAVYPTPLERSAKVRVCVEFLQEYFGRQRPW 318


>gi|237799825|ref|ZP_04588286.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806370|ref|ZP_04593074.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022680|gb|EGI02737.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027483|gb|EGI07538.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 315

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 132/292 (45%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILASVEEAEAEASDAHARPAGQLKMHSMPGVGQHYVIDAIARYRRNHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y++      
Sbjct: 121 VAFDLTMTHRVPDLLEEGFDVSIVLASELADSGFVSQRLGITYSIVCASPEYVRTFGMAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  +     +   +E + +     + +     S L VNS  ++      G GI
Sbjct: 181 KPADLLNHACLRLVSPV-FPLEKWLFDGPDGQEMVTINSSPLLVNSADAMKTAISSGMGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LP Y   D   N  LVR++ D  +    +Y  YP       K++ +  ++
Sbjct: 240 GILPIYSAIDGLRNGTLVRVLSDYRSQELNLYAIYPSRQYLDAKIRTWVEYL 291


>gi|254507916|ref|ZP_05120045.1| transcriptional regulator [Vibrio parahaemolyticus 16]
 gi|219549152|gb|EED26148.1| transcriptional regulator [Vibrio parahaemolyticus 16]
          Length = 315

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 10/295 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F ++   GSFT AA++L ++ S++S+ ++ LE  + +KLF R  R L +T+ G ++
Sbjct: 12  DLASFILIVEEGSFTAAAKKLDVTPSALSKMVTRLEHSLSVKLFERTTRKLIITQSGQQV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     + +  +           +  G L +A       ++LQ  +  FL  YPDIQ++L
Sbjct: 72  YDQAIIMVNAAKQAVELSTSDHTEMRGALTVAAPEAFLNSVLQPFVVPFLKKYPDIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +IDI     D A +L       +L+ +++ + ++   A+P YL     P+   EL
Sbjct: 132 RAADGEIDIIRHNIDVAFKLTDK-PDENLVLKEIGSTNLVLCASPEYLTQRTTPMHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +   +     + DF      D            VN     +       GI +  D
Sbjct: 191 SHHDCLYLAENDRDHIWDF---FKDDEYHSIAVKGRYAVNHSQMRLTGVKNDLGIGIFHD 247

Query: 247 YIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +++ D      +++++ED    S     V   Y +      +L+AF +++  + R
Sbjct: 248 FVIADALKRGEVIQVLEDWTIKSNYHGGVAMQYAQTKYMPARLRAFIDYVTEELR 302


>gi|170722339|ref|YP_001750027.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169760342|gb|ACA73658.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 309

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 139/294 (47%), Gaps = 4/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  VA +GSFT AAE++ L+ S++S+ ++ LE  + +KLF R  R L LT+ G+
Sbjct: 7   LKGIAVFICVAEAGSFTAAAERMSLTTSAVSKSVARLEQRLNMKLFARTTRRLALTDTGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++   LE  ++++  +  +P G++RI      G+  +   L EF+  +  +  
Sbjct: 67  NYYQTCKQILASLEEAEMQMHSAQTEPCGRVRIDLPASYGKLRVLPLLIEFIAEHELLMP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSI 183
            + L ++ +D      D  +R+  P      ++R+L+ I  H   AAP YL+    P + 
Sbjct: 127 HITLTDRFVDPIEHDIDILVRIGGPQTWPQGVERRLIGIQQHIFCAAPGYLQRRGVPETE 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  + +G             A             + + +    +   + G G+A 
Sbjct: 187 RDLHEHGCVLYGRTDGGVYPLHFPGAHASDSEQRVVSGRIAIGNAEGQLAMVLAGLGVAQ 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP ++V+++     LV+I+ ++ T    +   + ++ ++  K+ A  + I  + 
Sbjct: 247 LPSWLVQEHLDAGTLVQILPELSTIGLPINVAWLKSRQSLPKVGALVDVICARL 300


>gi|317054166|ref|YP_004118191.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952161|gb|ADU71635.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 300

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 127/290 (43%), Gaps = 5/290 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F      GSF  AAE+LH++ S++S+ ++ LET +G +L  R  R L LT+ G+
Sbjct: 6   LKDIAPFVASIECGSFAAAAERLHITGSAVSKSVTRLETRLGSRLLERTTRSLKLTDAGN 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +L   +  L      PSGKLR+A     G+  +   L  F   +P++++
Sbjct: 66  AYYQTCIRILEELAEAEAVLAAQRSIPSGKLRLAVPNTYGRLAVMPLLMPFCQQHPELEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L   ++ +D+  +  D A+R+   P  S+SL  R++    M   AAP YL     P  I
Sbjct: 126 SLRFSDRMVDLFDEGIDVAVRIGDTPNISASLGCRQMGRECMVFCAAPDYLARAGRPHHI 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I + + +    + +                 + +    + +Q    G GIA 
Sbjct: 186 SDLLQHPAILY-ERVDGSTKPWLLQTEDGHLQWRSVPHRMALGDVDAQVQAVCAGLGIAQ 244

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P +++++      L  ++         +   +P   +   K+ A  + +
Sbjct: 245 MPSWLIREPLARGELEILLPSHQPDGLMLTLVWPRRKQLLPKVDALLDAL 294


>gi|34496594|ref|NP_900809.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34102448|gb|AAQ58814.1| probable transcriptional regulator LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 301

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 125/293 (42%), Gaps = 7/293 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+ F  +AR  SFT A  +L +S S++S+ +  LE  +G+ L  R  R +  TE G  
Sbjct: 7   EALQAFCAIARHRSFTRAGAELGVSASALSQTMRQLEGALGVPLLTRTTRQVAPTEAGEA 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +    ++     E  ++  +P G+LR+       Q L    L +F   +P ++++
Sbjct: 67  LLARLAPALDEIRAALDEAGQAQGQPVGRLRVTLPHTAAQLLFYPALADFAARHPRLRLE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L ++N  +DI     D  +R  + +Q           +     AAP YL     P   ++
Sbjct: 127 LDVNNGLVDIVAQRFDAGVRFGEALQPGMQALPVSRPLRFVVAAAPGYLSRRGAPQHPED 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  + +        + + W    D  P+       L  N   +++   + G+G+A L
Sbjct: 187 LAGHACLGYRF---GGGQHYRWQFVRDGLPLQLAVDGPLIANDNTAMLHAALGGAGLAYL 243

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + +++       L  +++    P+  +Y  YP   +   KL+A   F+  +A
Sbjct: 244 AEPLIEPWVAAGKLAVVLDGYAPPAEALYLYYPHRPQQPAKLRALIAFLRERA 296


>gi|92113904|ref|YP_573832.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796994|gb|ABE59133.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 313

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 124/300 (41%), Gaps = 6/300 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V + G F  A   L + +S +SR+I+ LE  +  +L +R  R  ++TE G
Sbjct: 3   DLNDLYYFVQVVKHGGFAPAGRALGIPKSKLSRRITQLEERLDTRLIHRSTRRFSVTELG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R +  +  + E  +  +Q    +P G +R++ +  +   L+   L  F+   P ++
Sbjct: 63  QAYYRHSVAMLVEAEAAEELIQRHHAEPQGTVRLSCSPSVLHYLITPLLVRFMARCPKVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+   ++ +D+  +  D AIR+R  P++ S L  + L +      AAP        P S
Sbjct: 123 VQVEATSRRVDVIKEGFDLAIRVRFPPLEDSDLTMKVLASSPQRLMAAPSLFAERPRPRS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +   + F     +   D   +         P    L  +S  ++    + G G+ 
Sbjct: 183 PADLVELPSLDFEQYDHRHCWDL--VGPNGASAQVPHWPRLVTDSAETLHAAALEGLGVV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            L   +   +     L+ ++         ++  +P        ++A  +F+  +  D  F
Sbjct: 241 KLGLLVGARDIQEGRLIDVLPGWEPRGGILHAAFPSRRGLLPAVRALLDFLDEQIADEDF 300


>gi|91790637|ref|YP_551589.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699862|gb|ABE46691.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 302

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 130/292 (44%), Gaps = 10/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L+   +  + GSF  AA  L +++S IS+ I+ LE + G  LF R  R + LT  G+
Sbjct: 4   LDALQALVLSKQLGSFAAAARALGVTRSQISKLIASLEADYGTALFVRSTRAIALTGAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH    ++       +  +       +G LR+   +  G+ +L   L +FL  +P +++
Sbjct: 64  TLHDYAVDLLAISAEAREAMAALRGTVAGPLRVNAPMSFGKLVLAPLLPQFLAQHPKVEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L+++ ID      D  +R+ + +  SSL  R++  +    YAAP YL+    P S +
Sbjct: 124 RVELNDRLIDPFEHGFDLTLRIAQ-LPDSSLAARRMCAVPRAIYAAPGYLQAHGVPDSPK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
            L  H  + +       +    W     R      +   L  N+   +++  V G+G+ L
Sbjct: 183 ALKTHRCLNYAHANTGHV----WHLGKGREKANVAVGGPLCSNNGDLLVEAAVAGAGLIL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIF 291
            P ++   +     LV ++      P  ++Y  YP   +    ++A  +++ 
Sbjct: 239 QPGFLAARHIAAGRLVPVLPQWQEFPEISLYALYPATRRVPTTVRALVDYLV 290


>gi|300717358|ref|YP_003742161.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299063194|emb|CAX60314.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 311

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 133/308 (43%), Gaps = 13/308 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + ++  L  F  V    SF+  A +  +S S ISR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   AINFRTLLFFIGVFDEQSFSAVARREGVSASMISRVILQLEDTLGQQLFYRNTRAVIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +L   + E+ + S++PSG +RI   +  GQ  +   L E    YP 
Sbjct: 66  AGRLFIDYARAMTEQLSEARTEMLDRSLEPSGLIRINAPVFFGQRHIAPWLTELSNRYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L   +  ID   D AD   R+   +  SS   R   T H H  A+P Y++   +P 
Sbjct: 126 LQIELTQTDDYIDPHRDAADVIFRIG-TLTDSSFHARVFGTQHYHLVASPEYVEKHGQPA 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  EL +H  + +          F       R    P    L  N+  S++   + G G+
Sbjct: 185 SPAELSEHKCLVYRGFSGPNRWLFR--KPGGRWTHFPVNGLLTSNNAESLLTSALGGMGM 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF---IF 291
            L PD+++ D+     LVR+ME       T    V   YP        ++A  ++   +F
Sbjct: 243 VLFPDWLIGDSLKKGALVRVMEKYQGASKTEPQHVAAIYPNVRHPPLNVRAVIDYYVEVF 302

Query: 292 LKARDWKF 299
                W+F
Sbjct: 303 GTPLYWQF 310


>gi|254248946|ref|ZP_04942266.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875447|gb|EAY65437.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 306

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 122/275 (44%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLEYARRILDQMDELGELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YPD+ +QL L      ++ D  D  I
Sbjct: 87  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPDVSVQLQLSVMPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L        AAP YL     P +  +L +HN I    GD      
Sbjct: 147 RFGEP-PDARVVARRLAPNRRLLCAAPAYLARHGVPGTPHDLTRHNCIGIRQGDEGYGVW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
              +                L  N     +++ + G GI +  ++ ++D   +  LV ++
Sbjct: 206 RLTSGRGAARHTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDLRDYLADGRLVVVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D  TPS  +Y  Y +  + + +++AF +F+  + 
Sbjct: 266 PDHETPSADIYAVYAQRHQMSTRIRAFVDFLAEEL 300


>gi|163854767|ref|YP_001629065.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258495|emb|CAP40794.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 305

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 135/302 (44%), Gaps = 13/302 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  +G+KL  R  R + LT
Sbjct: 1   MDIQLNDIALFVEVAKRKNFSHAAEALNMPASTLSRRVSELEQNIGMKLLNRSTRRIELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +  +      +L + + +P G+LR++    L Q  L   ++EF   +P
Sbjct: 61  EAGLVYFERCRPIVEEARVAHDQLLDMAAQPKGRLRVSMPSSLAQLFLPAVIREFRTQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+    L+ + ID   +  D  +R  +    SSL+ R+++ +    YA+P YL+    P
Sbjct: 121 DIECDFDLNMQHIDPISNPFDLVLRFGRQ-PDSSLVARQIMLMKHRLYASPQYLERHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
               +L  H  +      P   E F+ W+      +    +S  L  N+   + +    G
Sbjct: 180 RVPSDLGHHECLR-----PAMSEAFSYWVLHSGEKVERVAVSGRLAANNVGILSRLASQG 234

Query: 239 SGIALLPDYIVKDNP----NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIA L  +     P     LV ++ D       ++   P       K +AF +FI  + 
Sbjct: 235 LGIAPLLVFDAIGQPIRNRGLVPVLPDWSLTPIPLFALMPS-RTIPAKTRAFLDFIQPRL 293

Query: 295 RD 296
            +
Sbjct: 294 AE 295


>gi|157147556|ref|YP_001454875.1| hypothetical protein CKO_03356 [Citrobacter koseri ATCC BAA-895]
 gi|157084761|gb|ABV14439.1| hypothetical protein CKO_03356 [Citrobacter koseri ATCC BAA-895]
          Length = 299

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 124/302 (41%), Gaps = 11/302 (3%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+      L  F ++   GSF+ AA    ++ S++SR +S LE E G +L +R  R L L
Sbjct: 1   MNLTLLPDLATFVLIVDHGSFSAAARAAGVTPSAMSRSVSRLERETGSQLLHRSTRKLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +E G  ++     +                 P GK+ ++    +G+ ++   + +FL  +
Sbjct: 61  SETGKMVYEHAKMMLEAARQAIDSGGSVQHVPQGKITLSVPKAVGRFVIHPLIPQFLERF 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L L+++ +D+  D  D A+++     S  L  + L+ I     A P YL+    
Sbjct: 121 PLVDVCLRLEDRYMDLIDDGVDLALQITN-TPSPGLHGKPLMPITHILCATPEYLQKQGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++L +H+ I+ G+        F       +            N     +       
Sbjct: 180 PTHPEDLRQHSCISLGETPTDSRWKFR---KQGKTEVVQTTGRYAANHTGVRLDAVKRHL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  LP +  ++   +  +++++ +       S  ++  +        K++A  +++  +
Sbjct: 237 GIGSLPAFTAREALQDGEIMQVLPEWTFISNYSGELWLLWAGNKHMPLKIRAMIDYLSQQ 296

Query: 294 AR 295
            +
Sbjct: 297 LK 298


>gi|296390295|ref|ZP_06879770.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 302

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 139/296 (46%), Gaps = 11/296 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T + Y  L   +  L ES  +PSG+LRI+        ++   L EF+  YP +Q+++ 
Sbjct: 70  EQTEQPYRDLVRAREALGESLAEPSGQLRISALHLAKNLVIAPMLNEFVRRYPKVQLEIR 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +LD
Sbjct: 130 YEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEHGTPASVADLD 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI--ALL 244
            H  + F    P+      W    D R +     +        +I++    G+GI  A +
Sbjct: 190 GHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTEAIIEAARAGAGIAQAFI 247

Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 248 RERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299


>gi|254251468|ref|ZP_04944786.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124894077|gb|EAY67957.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 310

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 121/299 (40%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE +   +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKTATRLFERSTRQLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     +GK+R+++T D G+N L   L EF  L+P 
Sbjct: 61  EGRLYLNCCRQALQALDDADAMLQEGRNVVAGKVRLSSTSDFGRNQLLDWLDEFTALHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L   +   ++  D  D AIR   P    +LI R+L        AAP +++    P 
Sbjct: 121 VTFSLTASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFIERYGAPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P     + N      ++ + G GI
Sbjct: 180 DPHDLARFPCNVITIASGPMNTWRFTRGDDVQTYTVPMSGAFETNDGGLTREWTLRGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           AL   + + D+     L  ++ +       ++  Y        +++   +F+  + AR+
Sbjct: 240 ALKSLWDIADDVRAGRLRVLLPEWRHQDAPLHAIYHSKRYMAPRVRVLLDFLAERFARE 298


>gi|115352796|ref|YP_774635.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115282784|gb|ABI88301.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 310

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKVATRLFERSTRQLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     +GK+R+++T D G+N L   L EF  L+P 
Sbjct: 61  EGRLYLNCCRQALQALDDAHALLQEGRNVVAGKVRLSSTSDFGRNQLLDWLDEFTTLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L   +   ++  D  D AIR   P    +LI R+L        AAP ++     P 
Sbjct: 121 VTFSLTASDSASNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFVARHGVPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPHDLARFPCNVITIASGPMNTWRFTRGDEVQTHTVPVSTAFETNDGGLTREWTLRGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           AL   + + D+     L  ++ D       ++  Y        +++   +F+  + AR+
Sbjct: 240 ALKSLWDIADDVRAGRLRVLLPDWRHQDAPLHAIYHSKRYMAPRVRVLLDFLAERFARE 298


>gi|300313746|ref|YP_003777838.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076531|gb|ADJ65930.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 299

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 129/294 (43%), Gaps = 14/294 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V  +G+FT AA+ L +  +++S+ +  LE  +G++L  R  R +++T +G   
Sbjct: 6   AIRAFARVVEAGNFTRAADSLDMPNATLSKLVRELEAHLGVRLLQRTTRRVSVTPEGLDY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  T  +   LE        +   P GKLRI       +++L   L +FL  YPDI I L
Sbjct: 66  YEKTGRLVRDLEDIDTSFNAARGNPRGKLRIDVGGSTARDVLIPALPDFLARYPDISIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+  D  DC IR   P+ +SSL+ R++    M   A P YLK    P    EL
Sbjct: 126 GVSDRPVDLIGDSVDCVIR-GGPLDNSSLVARQIGQARMVTCATPAYLKQFGVPAYPDEL 184

Query: 187 DK-HNLITFGDLIPKCMEDFNWLATVDRP----IGEPRISCLQVNSYLSIMQYCVLGSGI 241
              H LI++  L P+    F +             E RI   + N++L+     +    I
Sbjct: 185 KNGHRLISY--LSPQSGRAFPFRFERKGEKIEIKTEHRIGVNESNAHLAAALAGLG---I 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                Y          LV I+       +  +  YP     + +L+ F +++  
Sbjct: 240 VQTFRYAAGPALARGELVEILTKWRPAPYPFHVVYPNNRHVSHRLRVFIDWLMA 293


>gi|17549476|ref|NP_522816.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431729|emb|CAD18408.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 329

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 131/296 (44%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LE  +G++L  R  R + +T+ G
Sbjct: 16  DLNDLVLFAAVVTHGSFSAAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S  +     +           + +  +PSG+LR++  + +    L   L +FLL  P+++
Sbjct: 76  SAFYAQCEVMTQAARAALEVAEHAGERPSGRLRVSCPVGVAHAFLAPVLSKFLLAQPEVR 135

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L + N+ +D+  +  D A+R+R  +  S+L+ R  V  ++   A+P ++       S 
Sbjct: 136 LELDVTNRRVDVIGEGYDVALRVRSTLDDSNLVVRTFVASNLVLAASPSFVAGHGPFDSA 195

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + L     +          E   W  T      +    +     +    + Q  + G G+
Sbjct: 196 ESL---RGVAGVGFGGVGGERARWRLTSPEGATVDIEYVPAFVTDDLFLLGQVAMAGVGV 252

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LP  +  D   +  LV ++ D   P   ++  +P        ++AF  F+  + 
Sbjct: 253 AQLPVNLCADAIRDGRLVMLLPDHRQPVHQLHAVFPSRRGLVPAVRAFIEFLAEEL 308


>gi|227325998|ref|ZP_03830022.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 302

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 124/287 (43%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AA+ L +S++ ++R ++ +ET  G +L +R  R L+LT+ G K   
Sbjct: 8   EVFVTIIDRGSMIAAADTLDMSRAMVTRYLAEMETWAGARLLHRTTRKLSLTDAGEKTLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++       ++E        SG LRI  +  L Q  L   +  FL  +P + I L +
Sbjct: 68  RCRDMLALTADMRVEADTDDATLSGLLRIGCSQSLAQGALGMAITAFLRRHPRVAIDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L +      A+P YL     P  + +L  
Sbjct: 128 NNRTVNLVEERIDLALRITNEL-DPNLIARPLSSCESVLCASPSYLNEHGIPRQLTDLSI 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+              +  D     P    L  N  L ++   + G+GIAL P Y 
Sbjct: 187 HNCLTYTYFGKSLWH----FSRDDEKFTIPVSGNLSGNESLVLLAGALEGAGIALQPRYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V     +  LV ++ +    +  +Y  Y    +    L+   +F+  
Sbjct: 243 VAPYLASGQLVALLPEYRPQAMGIYGIYTSRRQMPAALRTLLDFLVE 289


>gi|187923426|ref|YP_001895068.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714620|gb|ACD15844.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 303

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 122/292 (41%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++++RVF  +A   SFT A++ L + +++++  +  +E  +G +L  R  R + LT 
Sbjct: 1   MDRFEEMRVFIRIAERQSFTRASDDLQIPRATVTNLMKRMEQRLGARLLERTTRTVRLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   +E  +         P G LR+     L ++ +   L  FL  +P 
Sbjct: 61  DGEAYYRRCVRLIADMEEAEGSFSNL--APKGLLRVNLQGTLARHFVVPALPAFLARFPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IELTIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLAAYGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L  H  + +                  R +     S + V          + G GI
Sbjct: 178 EPSALSTHRAVNYVSSATAKAVPLE-FKVAGREVAMVLPSAVSVTGTELYTGSALAGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V        L  I+ D   P   V   YP+  + + +++ F  ++
Sbjct: 237 VQVPQYRVAAELATGRLKIILADFPPPPMPVSVLYPQNRQLSSRVRVFAQWL 288


>gi|251789949|ref|YP_003004670.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538570|gb|ACT07191.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 302

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 13/292 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  +   GS T AA+ L +S++ ++R ++ +E     +L +R  R L+LT +G  + +
Sbjct: 8   QVFVAITEQGSLTGAADALDMSRAMVTRYLAEMERWADARLLHRSTRQLSLTTEGDTVLQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+    +      +E    P+G +R+  +  L Q  L   +  +L  YP   + L +
Sbjct: 68  YCRELLAVSQKLDRPARERME-PAGLMRLTCSPSLAQTTLVEAITAYLRRYPKTAVDLQV 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +  +++  +  D AIR+   +  S LI R+L        AAP YL     P  ++EL  
Sbjct: 127 ASHTLNLIEERIDLAIRITSQL-DSGLIARRLGGCPSVVCAAPSYLAAQGTPQRVEELAV 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H+ +T+        +           I  P       N  L++++  + G+GI+L P Y 
Sbjct: 186 HDCLTYSFFGKSLWQ----FIRKGETIAVPVSGSFSANDSLTLLEAALNGAGISLQPVYS 241

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           V D   +  L+ +  +V      +Y  Y    + +  L+A  +F+     DW
Sbjct: 242 VTDLIASKRLIALFPEVQPQELDIYAVYHSRERMSPALRALVDFLA----DW 289


>gi|254509574|ref|ZP_05121641.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221533285|gb|EEE36273.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 304

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   + +S +  S +IS LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYDLGSMSAAGRDMRISPAVTSARISQLEDHLGVRLFQRTTRNLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++  + ++   +  P G L +A  + +G+ LL  ++ +FL  Y 
Sbjct: 60  EQGRAFYPGAVAVLDAVDEAEAQVTHLTEAPRGSLFVAAPLGIGRRLLAPHVPDFLSEYA 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L L ++ +D++ +  D A  + +P + S+L  RK+        AAP Y++    P
Sbjct: 120 EIDVRLRLTDRSVDLTTEGLDLAFFIGQP-EDSTLRIRKIADCARVLCAAPAYVERRGMP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +  EL  DKH  +      P   E    L T + P         + +    +  + + G
Sbjct: 179 ETGAELIADKHECLNL--RFPGATEFQWMLDTPEGPKRFAVSGRFECDDGDVLTDWALSG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA+ P + V ++     L+ +       +  +   Y        K + F +F+  +
Sbjct: 237 QGIAMKPVFEVSEHLKTGRLIPVATQTPPVTVQMACLYTHRRHQDPKARLFMDFMIDR 294


>gi|116049280|ref|YP_791917.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584501|gb|ABJ10516.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 302

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 139/296 (46%), Gaps = 11/296 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T + Y  L   +  L ES  +PSG+LRI+        ++   L EF+  YP +Q+++ 
Sbjct: 70  EQTEQPYRDLVRAREALGESLAEPSGQLRISALHLAKNLVIAPMLNEFVRRYPKVQLEIR 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +LD
Sbjct: 130 YEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEHGTPASVADLD 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI--ALL 244
            H  + F    P+      W    D R +     +        +I++    G+GI  A +
Sbjct: 190 GHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTETIIEAARAGAGIAQAFI 247

Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 248 RERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299


>gi|283833825|ref|ZP_06353566.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291070493|gb|EFE08602.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 303

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 5   DLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  +    V+P G +++   + L    +   L  F+  YPD+ 
Sbjct: 65  QTFYEHCKAMLVEAQAAQDAIAALQVEPRGVVKLTCPVTLLHVHIGPMLARFMARYPDVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R +P + S L+ R L       YA+P  ++      S
Sbjct: 125 VQLEATNRRVDVIGEGLDVAIRVRPRPFEDSDLVMRVLADRGHRLYASPRLIERMGPVHS 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +   ++      K +  +                 +     L++ +  V G G+ 
Sbjct: 185 PAELTRWPGLSLAS--GKHVHRWELFGPQGARAEVHFTPRMITTDMLALREAAVAGVGVV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +VK       LV +++        ++  +P        ++A  +F+  +
Sbjct: 243 QLPQLMVKAQLAAGELVALLDGWEPKREIIHAVFPSRRGLLPSVRALVDFLTEE 296


>gi|239502559|ref|ZP_04661869.1| Putative transcriptional regulator [Acinetobacter baumannii AB900]
          Length = 300

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 123/296 (41%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F +VA+  SFT AA +L  SQS+IS+ +  LE  +GIKL  R  R +  T
Sbjct: 1   MKENLNDLHTFMIVAQERSFTRAAAKLRTSQSAISQTLRNLEERIGIKLLSRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L  +      ++E    ++      P+G LRI+      Q++L   +++ L  +P
Sbjct: 61  EAGEYLLNLLQPAIEEIEHGINQISALKNDPAGTLRISADEYGIQSVLWPAVEKVLQQFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +++I D   +DI     D  +R    +    +  +    I M   A   YL     P
Sbjct: 121 KISVEIISDYGLVDIVEGRFDAGLRRGGLVSKDMIALQVSEPIQMLTVATKEYLDRYGHP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              ++L +H  I     +P   E + W  T         I+  +   +   ++Q    G 
Sbjct: 181 KQPKDLVEHQCINL--RLPTHGELYRWQFTKQDKTQTVTINAKIVFTTLSPVLQAARSGV 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA LP  +V+   ++  L   ++D        +  YP   +    L    + +  
Sbjct: 239 GIAYLPIDMVQPYIESGELEETLKDWRHSYEPYHLYYPHRREQAPLLNILIDALKE 294


>gi|254427732|ref|ZP_05041439.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
 gi|196193901|gb|EDX88860.1| LysR substrate binding domain protein [Alcanivorax sp. DG881]
          Length = 301

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 123/295 (41%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +++F + A   + + A  +L +  +  S +++ LE  VG  L  R  R + L+ +
Sbjct: 1   MDTEGIKLFVLAAEKLNISAAGRELGMPPAVASAKLAKLEKGVGADLLKRTTRKVALSVE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++      E+  +       L   +   SG LR   +    Q  +   + EFL L+P I
Sbjct: 61  GAEFLPYAREILAQENAALAALGYGNETVSGNLRFTASSTFAQQFIVSLIPEFLALHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L + ++D+     D A+R    +  S+L  RKL        A+P YL     P S
Sbjct: 121 SLDLRLSDMELDLIQGSFDLALR-NAVLPESNLHARKLAEDKRILCASPDYLATHGTPES 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  H LI F       + D +                L ++  LS       G+GIA
Sbjct: 180 PDGLLNHQLIAFKTASSIKLTDPD--GESGEFNTRVAGHRLTIDDGLSYKIATRCGAGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK 293
           +   + V       +LV+++ +    +   ++  YP++   T K++ F +F+  +
Sbjct: 238 IHSLWSVHKELAEGSLVQVLPEYRMDAEPALWLVYPKSNVLTAKVRVFIDFLIER 292


>gi|238562707|ref|ZP_00440010.2| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|254184673|ref|ZP_04891262.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254194115|ref|ZP_04900547.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254202862|ref|ZP_04909224.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254208201|ref|ZP_04914550.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|147745907|gb|EDK52985.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147750888|gb|EDK57956.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|169650866|gb|EDS83559.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184215265|gb|EDU12246.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|238522116|gb|EEP85562.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
          Length = 307

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE EVG  L  R  R L +TE
Sbjct: 12  DVNLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEVGASLVVRTTRRLNVTE 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    ET    +   +    G LR++  +D G  ++   L      +P 
Sbjct: 72  AGRAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPA 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P 
Sbjct: 132 LEIELQCDDRVVDLVRDNLDVAIRLGR-LADSNHRAAKLGGFERWLVASPAFVARHGAPA 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L     +    +    +E  N  A  +R     R      N+  +     + G G 
Sbjct: 191 SPEALGALPYVMLSTVPRTTLELAN--AHGERASVRCR-RAFASNTATACRAAVLAGGGF 247

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +   +   D+     LVR++     P   ++  +P A   + K++A  + +  + 
Sbjct: 248 GVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRALIDMLKTRL 303


>gi|299069657|emb|CBJ40930.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 329

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 130/294 (44%), Gaps = 4/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LE  +G++L  R  R + +T+ G
Sbjct: 16  DLNDLVLFAAVVTHGSFSAAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S  +     +           + +  +PSG+LR++  + +    L   L +FLL  P+++
Sbjct: 76  SAFYAQCEVMTQAARAALEVAEHAGERPSGRLRVSCPVGVAHAFLAPVLSKFLLAQPEVR 135

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L + N+ +D+  +  D A+R+R  +  S+L+ R     ++   A+P ++       S 
Sbjct: 136 LELDVTNRRVDVIGEGYDVALRVRSTLDDSNLVVRTFTASNLVLAASPSFVAGHGPFDSA 195

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L +         +      +   +     +    +     +    + Q  + G G+A 
Sbjct: 196 ESL-QGVAGVGFGGVGGERARWRLTSPEGATVDIDYVPAFVTDDLFLLGQVAMAGVGVAQ 254

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP  +  D   +  LV ++ D   P   ++  +P        ++AF  F+  + 
Sbjct: 255 LPVNLCADAIRDGRLVVLLPDHRQPVHQLHAVFPSRRGLVPAVRAFIEFLAEEL 308


>gi|119468743|ref|ZP_01611795.1| predicted DNA-binding transcriptional regulator [Alteromonadales
           bacterium TW-7]
 gi|119447799|gb|EAW29065.1| predicted DNA-binding transcriptional regulator [Alteromonadales
           bacterium TW-7]
          Length = 295

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 133/295 (45%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  V  SGSF+ AA  L+   + +SR +S LE  +   L  R  R L LTE+G  
Sbjct: 8   EDLEMFLTVVDSGSFSAAANLLNQQVAKVSRAVSRLENTLQCTLLNRTTRRLELTEEGHI 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   +  + L+T +  ++     PSGKLRI        + L   + EF + YP I + 
Sbjct: 68  FIKYARDGLNTLQTGEEAIKLLKQSPSGKLRIDAASPFVLHQLVPLIAEFNMQYPHIMLD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +  ID+     D AIR+   ++ S+L  +KL    +H  A+P YLKN  E     +
Sbjct: 128 ITSHDSIIDLLEHKTDLAIRIGD-LKDSNLYAKKLGASKLHLVASPEYLKNAPELTQASD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H LI F D         N  + +   I          +S  +I Q C+   GIALL 
Sbjct: 187 LGQHKLIGFTDSPALNNWPLNIPSKLSFEI--------TASSGETIRQLCIANQGIALLS 238

Query: 246 DYIVKDN---PNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +++ ++     LV ++ + I        +   Y +    + ++ AF +FI  K 
Sbjct: 239 HFMIGNDLKAGRLVNVLPNSIKTPNHREDIQAVYYKNSAVSSRIVAFLDFIKPKL 293


>gi|70730132|ref|YP_259871.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344431|gb|AAY92037.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 302

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 133/295 (45%), Gaps = 4/295 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  VA  GSF  AAE+L+L+ S++S+ I+ LE  +  +LF R  R L LT+ G+
Sbjct: 7   LKGIDVFVCVADCGSFKAAAERLNLTASAVSKAIARLEGRLQARLFQRTTRSLALTDAGT 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  S V   LE  ++ L   + +  G++RI      G++ + G +  F   +P +Q 
Sbjct: 67  AFYRTCSGVLADLEEAELALNAENSELRGRVRIDLPGTFGRSQVLGAVLRFAREHPGLQP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +   +  ++     AD A+RL    Q   +L  R L        A+P YL++   PL+ 
Sbjct: 127 HITFSDPGVEPLEAGADIAVRLGGSGQWPAALGHRCLGREWHLFCASPDYLRSHGVPLTD 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L++H  I +G +  +                    +   V     ++     G GIA 
Sbjct: 187 QDLERHQCIAYGWVDGRVSPWNFASGRPGESERRVMSASCVVGDGEGLLMAVQQGYGIAQ 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP ++VK   ++ +LV ++    +    ++  + ++ +   K+ A    +    R
Sbjct: 247 LPSWLVKRQLEDGSLVEVLPQWASEGQAIHLLWLKSRQGLPKVSALLEMLERNLR 301


>gi|77465137|ref|YP_354640.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126464593|ref|YP_001045706.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|77389555|gb|ABA80739.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
 gi|126106404|gb|ABN78934.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 298

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 135/298 (45%), Gaps = 8/298 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+LR F   A++GSFT AA+QL +S    S+ ++ LE  +G++L  R  R + LT 
Sbjct: 1   MDLTDELRAFVATAKTGSFTAAADQLGVSNRLTSKYVAELEKRLGVRLLQRTTRKVGLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +  +L+   +E+   S   +G +R++  +  G++ + G L  F  L+P 
Sbjct: 61  SGETLLARAPALLDELDDLLVEVSHGSRGFTGTIRVSAPVTFGEDYVGGMLGRFAALHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L++   D++ +  D A R+ +  ++ SL  RKL  +     A+P Y+     P 
Sbjct: 121 LVVDLRLNDSFADLASEGIDVAFRVGRS-ETLSLKTRKLGEVRTVPAASPGYIATRGAPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H+ I   D   +    + +L        E R    QVNS  +     + G GI
Sbjct: 180 RPEDLVRHDCIL--DTNRRVPRRWTFLEDGTERSVEIR-GRFQVNSARAAADLAMAGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              P + + +   +  LV ++E        V   Y E      K++A  +F     R 
Sbjct: 237 CYAPRFALAEALRSGRLVPVLEAFGGAVVPVSAVYLEGRSLPQKVRALIDFALEDIRQ 294


>gi|332530805|ref|ZP_08406731.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332039717|gb|EGI76117.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 315

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 129/298 (43%), Gaps = 6/298 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  V   G F  A   L + +S +SR+I+ LE+ + ++L  R  R L+LT+ G
Sbjct: 3   DLNDMLYFAEVVERGGFAAAGRVLGIPKSRLSRRIAELESRLDVRLLQRTTRKLSLTQAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R  + V  + +  Q  L    V+P G +R+A  I L Q  +   +  F+  YP ++
Sbjct: 63  ELYLRHCAAVRDEAQAAQDALAAVQVEPRGVIRVACPITLAQTTVGHLVPHFMAQYPQVK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +D+  +  D A+R+R  +  S SL+ + L        A+P  L    EP +
Sbjct: 123 VEMRVSNRVVDLVEEGVDVALRVRASLDESGSLVVKHLGESRSLLVASPELLARQGEPRT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSG 240
           +Q+L + + +    L  +            +              +  +++      G G
Sbjct: 183 VQDLTRLDTVAMSALEGRATLRLLGPEANGKKAEYVLTHQPRYVADDLVTLQYAVQRGIG 242

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  LPDY+      +  LV+++      +  V+  +P        ++ F +F+    R
Sbjct: 243 MTALPDYLCHAALSDGRLVQVLPGWAPQAGIVHAVFPSRRGLNPAVRRFLDFLGAHLR 300


>gi|152981643|ref|YP_001352264.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281720|gb|ABR90130.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 321

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 125/287 (43%), Gaps = 6/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F  +  +GS + AAEQL  SQ ++SR++  LE  +G++L  R    + LTE G 
Sbjct: 12  IELMQTFVRIVEAGSLSAAAEQLKTSQPTVSRRLQALERSLGLRLLQRSTHVMKLTEDGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+    +  + +L+ +  +P G LR+      GQ  L   L ++L  YP + +
Sbjct: 72  RCFARAKELLDNWKAMEADLRGTQDEPEGTLRVLVPHAFGQEHLIAPLADYLGRYPRVSV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D   +  DCAI++   +  S  +  KL  +     A+P  +K     L++ 
Sbjct: 132 EWMLHDRHPDFIAEGIDCAIQVGVVVNPSV-VAIKLFDVPRIIVASPQLVKAHASSLTVD 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL     + F     + +         +          +  +S  ++      G G  ++
Sbjct: 191 ELHTLPWLAFRTFYREEVVLTRQSDGAEHAFSIQ--PRMSTDSLYALRTAVATGLGAGIV 248

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             ++V D+     L+ ++ D   P   VY  YP A     +L+ F +
Sbjct: 249 SGWLVADDIAQGRLLHLVPDWRAPPLPVYLVYPHARYYPARLRLFLD 295


>gi|126175018|ref|YP_001051167.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|153001347|ref|YP_001367028.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|160876066|ref|YP_001555382.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|125998223|gb|ABN62298.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
 gi|151365965|gb|ABS08965.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
 gi|160861588|gb|ABX50122.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315268262|gb|ADT95115.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 312

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 130/298 (43%), Gaps = 10/298 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +   L+ F  V  S S++  A +  +S S ISR IS LE  +G +LFYR+ R +  TE
Sbjct: 6   SINMRALKFFIGVYDSKSYSVVARKEGVSPSMISRVISQLEDSLGQQLFYRNTRAIIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +L   + EL + +++P G +RI   +  GQ  +   L  FL  YP 
Sbjct: 66  SGRIFIEYARSMAEQLNEVRNELLDRTIEPKGLIRINAPVFFGQRHIAPWLAGFLRRYPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L   +  ID  +  AD   R+   +  SSL  R L +   H  A+  Y+     P 
Sbjct: 126 VQVELTQTDDYIDPHVSAADIIFRIG-TLVDSSLHSRILGSQTYHLAASKAYIALHGMPT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +     +    FN   T    + +P    L  N+  +++   +   GI
Sbjct: 185 EPADLKNHQCLVYSGSSGQNRWFFNKNKTT--WLHQPITPILTSNNAETLLIAALNDMGI 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            L PD+++ D+     L+ ++ D  +        +   YP +   +  ++A  ++   
Sbjct: 243 VLFPDWLIGDSLKNGQLISLLTDCESAIKIDQHYITAIYPNSRTPSLNVRAVIDYFLE 300


>gi|260774088|ref|ZP_05883003.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260611049|gb|EEX36253.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 298

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 131/292 (44%), Gaps = 11/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA  GSFT AAE L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDKLTAMRSFVEVANIGSFTQAAENLNLSRLQVSRHVQEIEDWLKQRLLHRTTRKVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  R   ++ ++    +I   E S   SG++RI+  I L + LL   ++ F  L+P 
Sbjct: 61  SGEEALRQCEKILNQTAELEIRALEQSQSLSGRIRISVPIGLARYLLLDAVEAFTDLHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I ++  ++   +  +  D A+R         LI R+L  +   A AAP YL   +  +
Sbjct: 121 VTIDILASDRLAQLVDERVDIALRFTTQ-PDEQLIARRLFQVDTVACAAPTYLAQHQPIV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L KHN   F  L     E        ++         ++ N    I +  + G GI
Sbjct: 180 QPSDLAKHNC--FVHLSHHKWE----FLRHNQTYSVNVNGTIRANDMSLICRATLHGKGI 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLP  +      +  L++I+ D    +  ++  Y      +  ++ F +F+
Sbjct: 234 ALLPCDLANRYLKDRALIQILPDYHLATNALWAVYLSRSYQSPLVRQFIDFV 285


>gi|330011025|ref|ZP_08306952.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328534314|gb|EGF60926.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 299

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 137/301 (45%), Gaps = 16/301 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGNISAAARKLEITPPSVSNALRLLEEHIGHPLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+     LE +   +++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTAAAVETLEKSLEIIRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           ++ + +  ++I  +  D  IR    ++   ++ R L+       YA+  YL     P   
Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILE-GGVVARPLMKPFREGLYASSAYLAEYGVPAMP 184

Query: 184 QELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +L  H LI +       ++P  + D     TV+ P        L  N    +      G
Sbjct: 185 ADLHHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI  L + I++   D    + +MED       VY  YP+    T ++KA  +F+ + A 
Sbjct: 239 LGIGRLFEPILQLQPDREQFIPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFLIMHAA 298

Query: 296 D 296
           +
Sbjct: 299 E 299


>gi|221199047|ref|ZP_03572092.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205305|ref|ZP_03578321.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175096|gb|EEE07527.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181498|gb|EEE13900.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 325

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 124/296 (41%), Gaps = 5/296 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             + VF   A  GS   AA    +S  + S  +  LE  +G++LF+R  R L+LTE+G +
Sbjct: 5   RAITVFVRAATLGSLRAAAVDQGISPQAASHAVMQLEKALGVRLFHRTTRKLSLTEEGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L          L +   + + S  + +G LR++    LG  +L    + F   YPD+Q+ 
Sbjct: 65  LFDSAKPALAMLASALGDARRSKSEVAGLLRVSAPRALGLPVLWPCFEAFEHAYPDVQLD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D++  D+  + AD   R   P  S+  I R LV I +   A+P Y+     P +I E
Sbjct: 125 VRFDDQFTDLVTERADVGFR-GGPPPSAGSIARPLVPIQLIVCASPEYIARHGAPRTIDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H    +       +  + +    D        + L VN         + G G+  L 
Sbjct: 184 LAAHRCTGYRRANTGKLAQWTFRVG-DEIAYRDVPAALTVNDTDMETHAVLSGLGVGQLG 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +       +  LV ++ + +     +Y  Y    + + ++K F +F+  +  D +
Sbjct: 243 SFSAAMHIRSGRLVPLLTEHVVEHGMIYLYYGHRTERSLRVKTFIDFVVDRLADNR 298


>gi|327395663|dbj|BAK13085.1| HTH-type transcriptional regulator PtxR [Pantoea ananatis AJ13355]
          Length = 310

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 129/285 (45%), Gaps = 6/285 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +  F  +  SGS + AA QL ++Q +ISR++  LE  +G+KL  R    L LT+ G 
Sbjct: 10  IELMHTFIRIVESGSLSAAALQLGITQPTISRRLQSLEQGLGLKLILRTTHALKLTDDGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++       + EL  +   P G LR+      GQ+ L   L  F+  YP ++I
Sbjct: 70  RCYAQARQLLATWHALEDELTGAGSDPVGILRVRAPHAFGQDQLVTPLVNFMRRYPRLRI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L+++  D   +  DCAI++   +   S++   L  +     AAP  L+       + 
Sbjct: 130 EWMLNDRTPDFVAENVDCAIQVGA-LTDPSVVAVLLAEVPRIVVAAPALLQQYPPINQVA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +         +   +       P+  P +  L  +S  ++ +  + G G A+L
Sbjct: 189 QLGDLPWLALTSFYRNEIALQH--KDKGEPMNLPIVPLLSSDSLFAVRKAALAGLGTAIL 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             ++++++    NL+++M +   P   V+  YP A     +L AF
Sbjct: 247 STWVIQEDLAQGNLIQLMPEWQAPPLPVWLTYPWASYYPARLTAF 291


>gi|170739640|ref|YP_001768295.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168193914|gb|ACA15861.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 296

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 123/297 (41%), Gaps = 11/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  +R+   VA + SF  AA  LH+S  +++R ++GLE  +G +LF R  R + LTE
Sbjct: 1   MDRWQAMRIVVKVAETASFAEAARHLHMSPPAVTRAVAGLEEVIGARLFVRTTRSVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L   +     S   PSG L +  ++  GQ  +   + ++L  YP 
Sbjct: 61  AGGRYVEDCRRILADLAEAEAAAAGSYATPSGTLTVTASVLFGQMHVLPIVTDYLDAYPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  + +  ++ ++I  +  D AIR+   +  S     ++  +      +P Y +    P 
Sbjct: 121 MAARTLFVDRLVNIVEEGVDVAIRIGH-LPDSGFTAIRVGAMRRVVCGSPAYFERHGVPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H +     +         W    D  +     S LQ NS  + +   + G G+
Sbjct: 180 TPADLKDHRI----AVSTGAWASPEWRFGRDERVTVH--SALQSNSNEAPISAALSGWGL 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                Y V     +  L  ++ D   P   ++  +P   +   K++ F +F   + R
Sbjct: 234 TRALHYQVGPALRDGRLRIVLADYEEPPLPIHVLHPGGRRAPAKVRTFVDFAVARLR 290


>gi|62180241|ref|YP_216658.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127874|gb|AAX65577.1| putative transcriptional regulator, LysR family [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322714715|gb|EFZ06286.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 301

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLRIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++       +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNHF-YDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|330992731|ref|ZP_08316675.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp.
           SXCC-1]
 gi|329760209|gb|EGG76709.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp.
           SXCC-1]
          Length = 302

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V  +GSFT AA Q+ + Q ++S+ ++GLE ++G +L  R   GLT T+
Sbjct: 1   MDRLQAMTVFVRVVETGSFTAAARQMGMGQPAVSKIVAGLEQQLGTQLLLRSTHGLTPTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +     + V           + S    SG+LR+A     G+  +   L  FL  +P 
Sbjct: 61  TGQRYFERVARVIADANEADTLARNSLADLSGRLRVAAPTTFGRLQIIPRLGRFLSAHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + LD++ +D+  +  D A+R+  P+  S+++ R+L        A P YL      +
Sbjct: 121 LEVDIELDDRRVDLVAEGIDVALRVG-PLHESAVVARRLARGRRSVIATPAYLARGPTLI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L  H  I +               +VD  +G    S L++++   +    +   G+
Sbjct: 180 SPKDLTHHQAILYTRGGTLRQTFRRGEESVDVTLG----SRLRLSAAEGVRAAVLADLGL 235

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +  D++         +VR + D   P+  ++   P     + + +AF +F+  
Sbjct: 236 TVSADWMFLSELRTQAVVRCLRDWTLPAVDLWALLPAGRLTSARARAFMDFVTE 289


>gi|190574798|ref|YP_001972643.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190012720|emb|CAQ46349.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 312

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR F  +  +GS + AA QL  +Q ++SR++  LE ++G++L  R   GL LTE G 
Sbjct: 14  LDLLRTFLRIVDAGSLSAAAVQLGTTQPTVSRRLQALERQLGLRLLQRSTHGLQLTEDGL 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R    V  + E+ Q EL        G+LR+      GQ  L   +  FL  +P + +
Sbjct: 74  RCQRHAQRVVDEWESLQAELHGEPETLRGRLRVMVPHAFGQAQLLPTMLAFLAQHPQLSL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + IL+++  D   +  DCA+R+  P+    ++   L  +     AAP  L       + +
Sbjct: 134 EWILEDRRPDFIAEGIDCAVRVG-PVDEPRMVALPLAEVPRIVVAAPS-LVQATAISTPE 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +      I+      + +   +           PR   L  ++   + Q    G G A++
Sbjct: 192 QAQALPWISLVTYYRERLLLHDAQGRAHTLSISPR---LLSDNLFVVQQAARAGLGAAVV 248

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             ++V D+     LV+++ D   P+  V+  +P A +   +L+AF + +    
Sbjct: 249 SAWLVADDLAQGRLVQLLPDWQAPALPVHVVFPAARQQPPRLRAFIDAMKAAL 301


>gi|170722380|ref|YP_001750068.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169760383|gb|ACA73699.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 298

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 143/301 (47%), Gaps = 7/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + +++F  V   GS+T AAE L++ + ++S+ I  LE E+G++L +R  R +  T
Sbjct: 1   MNL-IEAMQMFVAVVEHGSYTKAAEALNVHRPALSKLIQNLEHELGVQLLHRTTRRVNTT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G + +  + ++  +L  T  +    +  P GKLRI     LGQ ++   L E +  YP
Sbjct: 60  PAGDEFYERSLKLLAELADTL-DWFSPARPPRGKLRIDMQTVLGQAVIIPRLPELMDRYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L   +   D+     DC++RL   +  SSL+ +++  + +   AAP Y++    P
Sbjct: 119 GLEISLATSDNLNDLIAQGIDCSVRLGD-LDDSSLVAKRIGEVALVTCAAPAYVQKYGLP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H  + F     + +  + +     + I     S + V++  +++   + G G
Sbjct: 178 GTLDDLQAHLAVNFMVEQRRQIMPWRFRGN-GKMISVKMRSAIVVDNAGALLCCALAGIG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +       ++   D+  LV ++ DV     TV   +P+    +  ++ F  ++    ++ 
Sbjct: 237 MVQGLRPALQRYIDSGRLVEVLPDVPVEPKTVSVLFPDRRHLSPNVRVFVEWVSALFQEE 296

Query: 298 K 298
           +
Sbjct: 297 R 297


>gi|325926818|ref|ZP_08188123.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325542784|gb|EGD14242.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 344

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 8/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R+F  +    SFT AA  + + +S+ ++ I+ +E  +G++L  R  R +  T 
Sbjct: 42  MDRFDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTL 101

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+    +   ++  +   +   V P G LR+     L ++ L   L  F   YP 
Sbjct: 102 DGELFHQRCMRILDDVDDAEGSFRG--VAPKGLLRVEVQGTLARHFLLPGLPAFFAHYPQ 159

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +   ++ +D+  +  DC +R   P++ S L+ R++  +     A P YL+    P 
Sbjct: 160 IQLVMSESDRWVDLVEEGIDCVLRYG-PLRDSELVARRVAMLERLTCATPQYLRRFGLPA 218

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++ LD+H ++    +    +       T          S L V    S +    LG GI
Sbjct: 219 QLEALDQHRMVGLRSITTGVVTPLE-FQTAQGVRTFALPSPLSVTGTESYLAGIRLGLGI 277

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           A +P + V  +     LV I+ D   PS  V   Y  A + + +++ F ++
Sbjct: 278 AQVPRFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVFLDW 328


>gi|323175477|gb|EFZ61072.1| hypothetical protein ECOK1180_5761 [Escherichia coli 1180]
          Length = 298

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 124/287 (43%), Gaps = 8/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
               F+ VAR+ SF  A ++L LS S+IS  I  LE  + I+LF R  R ++LTE GS L
Sbjct: 3   DFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLTEAGSNL 62

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +      + +++    E+ +  + P+G L+I       +  L   L  F   YPDI+++L
Sbjct: 63  YERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMPLLVGFTREYPDIKVEL 122

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             D+  +DI     D  +RL   ++   +       + +   A P Y     +P    +L
Sbjct: 123 TTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIGPPVKLCVAATPEYFARYGKPRHPHDL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + F        + F+W    +  I       + ++   + ++  ++G+GI  L  
Sbjct: 183 LNHQCVVFRY---PSGKPFHWQFAKELEIAV--AGNIILDDVDAELEAVLMGAGIGYLLY 237

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +K   D   L  ++ D  T        YP     +  L+AF +++
Sbjct: 238 EQIKEYLDTGRLECVLGDWSTERPGFQIYYPNRQYMSCGLRAFLDYV 284


>gi|311694571|gb|ADP97444.1| transcriptional regulator, LysR family protein [marine bacterium
           HP15]
          Length = 303

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 130/298 (43%), Gaps = 6/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D +    F  V     +T AA+ L + +S +SR ++ LE  +G++L  R +R + +T
Sbjct: 1   MSIDLNDYFYFVHVVEKKGYTAAAKALDMPKSRLSRHVAQLEERLGVRLLQRSSRNVAVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   ++   ++  + E  +  +     + SGK+ I+ ++ + Q +L   + +F  L+P
Sbjct: 61  EEGKSFYQHARKLVDQFEMAEAAMDNRGGRLSGKVVISCSLGVAQFVLFDIVTDFARLHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++ I+  + N  ID+  +  D AIR     +  SSLIQR +  +    Y +P YL+   +
Sbjct: 121 NVLIEQRVTNSMIDLITEGVDIAIRGHSGELPDSSLIQRFIANVEWQFYCSPGYLEQLEQ 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +  +      +  G       E             +     L      +I Q  + G 
Sbjct: 181 LQTPYDFASCRFLKVGRA--GAKEAIPLQHKDGLRTHQTTHIALCSEDMSTIRQAAIDGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+  LPDY+ +   +   LVR++   ++   ++    P  +      KA   FI  + 
Sbjct: 239 GVTALPDYVCRAPVEAGQLVRVLPAWVSQYASLSLLMPSRVGVPPHTKALAEFIRERL 296


>gi|296156985|ref|ZP_06839822.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295892871|gb|EFG72652.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 363

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 81/300 (27%), Positives = 139/300 (46%), Gaps = 9/300 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D +  +R F   A  GS T AA++L +  S+ SR ++ LE ++ I LF R  RGL+LT
Sbjct: 59  DMDYFAAVRTFVRAAELGSLTRAAQELSIKTSTASRHLNELEADLRIALFNRSTRGLSLT 118

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +   SEV  +L+  +      +  PSG LR+   +  G+  +  ++ EF+  Y 
Sbjct: 119 EGGKVFYARVSEVLTQLKDARDATSSLNQSPSGVLRVTLPVSFGRKHVVPHIGEFMDRYR 178

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++ I  +  +++     D  IR+   +Q SSL+ R+L      A AAP Y K C  P
Sbjct: 179 DIDVEAIFTDDILNLIESQIDLGIRIGA-LQDSSLMARRLAPHREVACAAPAYAKACGVP 237

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++   L  H  + F   +           T            L ++   +++   + G G
Sbjct: 238 VTPGALKDHACLMFSRTVGNVWYVRPRNDTAAEWQKATVNGRLTLDDTDALLAVALAGRG 297

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPS----FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IALLP+++  +   +  L  I+ D    S     +++  YP     + K+++F +F+  K
Sbjct: 298 IALLPNWLAYEPLGDGRLTNILPDWEIRSSREEASIWAVYPRKKTVSSKVRSFIDFLADK 357


>gi|158422960|ref|YP_001524252.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158329849|dbj|BAF87334.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 309

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 132/297 (44%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D + V   V  +GS +  A  L    +++SR+I+ LE  +G  LF R  RGL LTE
Sbjct: 1   MDRFDAMSVLLAVVEAGSLSAGARLLRAPLATVSRKIAELELHLGTPLFVRSRRGLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G      +  +  +LE  + E       P G L +   I  G+  L     EFL  +P+
Sbjct: 61  PGRAFVAASRRILSQLEEAEREAAGEFSTPRGTLHVTAPISFGERHLLPIALEFLAEHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L ++ I +  ++ D A+R+   ++ S+LI  ++  +H    A+P YL     P 
Sbjct: 121 ISLRLTLTDRQISLGDEHIDVALRIGH-LEDSALIATRVGAVHRVICASPAYLARRGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  I+F          +   +        P+   L VN+  + +Q    G GI
Sbjct: 180 RPEDLATHEGISFQGFAVAPEWRYRRDSAAFSIEPSPK---LAVNTTEAAIQAARAGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y V D   +  L  ++ + +     V   YP+A     K+++F ++   + R
Sbjct: 237 IRVLSYQVADELRSGELQVLLPESVPEPLPVSLIYPQADMLPLKVRSFLDWTVPRLR 293


>gi|217974780|ref|YP_002359531.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217499915|gb|ACK48108.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 300

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 15/297 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG + 
Sbjct: 6   AIRSFVEVANCGSFTKAAEHLDLSRLQVSRHIQEVEQWLSLRLLHRTTRSVSLTLQGEEA 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ ++P + IQL
Sbjct: 66  LQFCQRILSEVAAMESRAHSHNSELVGSIRIATPIGLGQHSLFDVVDRFIKIHPKVSIQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +    +  +  D A+R  +     +LI R+L+TI     AAP YL +    +   +L
Sbjct: 126 VMSDSFAQLVDERVDVALRYTEQ-PDDNLIARRLMTIDAVICAAPSYLDSNTPLVEPIDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN +             NW    +      +++  L+ N    ++   + G GI  LP
Sbjct: 185 LAHNCLIHS-------AQQNWPFLKELQAEHVKVTGNLKANDMGVLVSAALRGHGIVRLP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +      +  L  ++ D  TP  T++  Y         ++AF +F    A+ W+ 
Sbjct: 238 CDLANQYLASGQLKEVLPDFTTPGQTLWAVYLSRSYQQNLVRAFIDF---TAQQWQL 291


>gi|153208506|ref|ZP_01946790.1| LysR transcriptional regulator [Coxiella burnetii 'MSU Goat Q177']
 gi|165924083|ref|ZP_02219915.1| LysR transcriptional regulator [Coxiella burnetii RSA 334]
 gi|212218257|ref|YP_002305044.1| transcriptional regulator, LysR family [Coxiella burnetii
           CbuK_Q154]
 gi|120575962|gb|EAX32586.1| LysR transcriptional regulator [Coxiella burnetii 'MSU Goat Q177']
 gi|165916486|gb|EDR35090.1| LysR transcriptional regulator [Coxiella burnetii RSA 334]
 gi|212012519|gb|ACJ19899.1| transcriptional regulator, LysR family [Coxiella burnetii
           CbuK_Q154]
          Length = 292

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 130/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++ +FY VA   SF+ AA +L +S+  +S QI+ LE ++ +KL +R  R LTLTE+G+
Sbjct: 4   LNQMEIFYFVATLKSFSRAALELGVSKGYVSTQITALEKDLMVKLLHRTTRHLTLTEEGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++ H+ +     L+ES  +PSG L++     +    L   L +F   YP I +
Sbjct: 64  LFLESCAKIVHEKKLAISLLKESQAEPSGHLKVTAPPSMCNTFLTELLPKFQKKYPKISL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +   ++     D A+R+       + I R + T      A  +YLK    P +  
Sbjct: 124 TIDPSSTVKNLLQHGIDLALRIT-TTPDENYIARMITTFRFVVCATSNYLKQRTIPKTPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +     +    F      +          L  ++ L I +  +   GIA L
Sbjct: 183 DLSQHNCLIYSADPIQNRWPFQ---IKNSTKIVTVKGSLVSSNSLIIKKALLANQGIARL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P YI+    +   L  +  + +     VY  Y  A+K   K+K F  F+
Sbjct: 240 PQYILTKEIEEGKLEVLFSENMKIEMPVYAIYASAVKIPPKIKCFIAFL 288


>gi|237808523|ref|YP_002892963.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500784|gb|ACQ93377.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 305

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 128/298 (42%), Gaps = 7/298 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              +D +R F + A+  SFT AA QL ++ S++ + +S LE  +GIKL +R  R L LT 
Sbjct: 3   PLSFDGIREFTLAAQLQSFTAAALQLGVTSSAVGKSVSRLERRLGIKLLHRTTRKLVLTH 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G         +  +L   +  +     +P G+LR+      G+  +   L +    +  
Sbjct: 63  EGEVYLSSCLHIIDELRDIESNMSTGVSEPRGRLRVDLPAAFGRRHIAPMLIDLSKQFSQ 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L    + ID+  +  D A+R+        L+ RKL    +   AAP YL+N    +
Sbjct: 123 LDLTLTFGERTIDMIGEGVDLAVRIGDLHNDPELVARKLGDQELVICAAPDYLRNNPPVI 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L +H+ I       K +     L      + + +I    +      ++Q  + G G
Sbjct: 183 DKADLLQHDCII---GWRKGLRAAWLLKNAKGELEQQQILVRHEFGDGEMMLQATLDGCG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++ LP +++ ++     LV +++        ++  +P       K++   + +   A+
Sbjct: 240 LSQLPTWLISEHLQNGALVTVLDCYAGAKMPIHVIWPRTRYIQPKVRMTVDALLQMAK 297


>gi|260777357|ref|ZP_05886251.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607023|gb|EEX33297.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 344

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 125/290 (43%), Gaps = 10/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F ++   GSFT AA++L ++ S++S+ I+ LE+ + +KLF R  R L +T  G ++
Sbjct: 48  DLASFILIVDEGSFTAAAKKLDVTPSALSKLITRLESALSVKLFERTTRKLVITPTGQQV 107

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     + +  +           + +G L IA       ++LQ  +  FL  YPDIQ++L
Sbjct: 108 YDQAIVMVNAAQQAWELSTTDHKQATGSLTIAAPEAFLNSVLQPFVVPFLQQYPDIQLKL 167

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + + +ID+  D  D A +L       +L+ +++   ++   A+P Y+     P    +L
Sbjct: 168 RVADGEIDLLKDRIDVAFKLTDK-PDENLVLKEVGKTNLVLCASPEYIHKRGMPSHPTDL 226

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +   +     + DF      D            VN     +       GI +  D
Sbjct: 227 QHHDCLYLAETERDNIWDF---FKDDEFHSMTVSGRYAVNHSQMRLTGVKNALGIGIFHD 283

Query: 247 YIVKDNPN---LVRIMEDVITPSFTVYFC---YPEALKNTGKLKAFRNFI 290
           +++ +      +V ++ D    S         YP+      +L+ F ++I
Sbjct: 284 FVIAEAIEKQQVVPVLSDWTIKSNYHGAVAMQYPQTKYMPARLRVFIDYI 333


>gi|325168409|ref|YP_004280199.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064132|gb|ADY67821.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 304

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  VA +GSF+ AA    L+Q ++SRQ+S LE     +LF+R    L+LT 
Sbjct: 1   MDVISALRTFLRVAETGSFSAAALDCGLTQPAVSRQVSSLEEHYSTRLFHRSTNALSLTV 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G ++  +  +V   +E             SGK+RI+    LG   +   L  FL   P 
Sbjct: 61  EGEQMISMAQKVIDAVEALGEAAFADGAVASGKVRISLPAALGLY-ISDRLPAFLASCPG 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++   +  D+  +  D  +RL + +  SSLI R++        A P Y++    P 
Sbjct: 120 LSVDIVFCEQSSDLIGEGIDLEVRLGE-VSDSSLICRRIGWTAAFLVATPSYIQRRGTPG 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + E+  H+ I +          F   A ++R    PR   +  N+  ++ +  + G G+
Sbjct: 179 HLLEIPDHDCICYNRGGEGRSWSFLNGADIERVKVTPR---MIFNNTGAVHRAALAGGGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A+L   +V D+     LV++M         +   Y        +++A  +F+ 
Sbjct: 236 AVLSHILVGDDIAAGRLVKVMPAFPPVRLPITIVYASRRNLPLRVRAVLDFLV 288


>gi|317406560|gb|EFV86754.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 302

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 127/294 (43%), Gaps = 8/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F     SG F  AA +L   +S++S++++ LET +G++L +R +R  TLT
Sbjct: 1   MMLNLNDLHFFAQAVDSGGFAAAARRLGCPKSTVSKRVATLETALGVQLLHRTSRSFTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++     V  + +  ++ +     +PSG +RI  ++ + Q  L   L      YP
Sbjct: 61  DVGRDVYDHARAVMIEAQAAEMVVHRRLAEPSGTVRITASVPVAQFQLADRLPVLARRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            ++IQL + ++ +D+  +  D AIR     +  S L+QR++    +   AAP Y+     
Sbjct: 121 KLRIQLHVTDRFVDLVQEGFDIAIRSHFAALPDSDLVQRRMAEEPITLVAAPSYVAERGA 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + Q L  H+ +  G       + +         +       L  +   ++MQ    G 
Sbjct: 181 PQAPQALGDHDGLMAGM----ATKSWRLGDASGHIVEVAPRPRLHADESTALMQAAQAGL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  LP  I         L+R++        T     P        ++A  +F+
Sbjct: 237 GIVCLPRTISAQAVSEGTLMRVLPAWTAGRVTTTILTPHKRGQLPAVRAVIDFL 290


>gi|152989252|ref|YP_001349767.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964410|gb|ABR86435.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 309

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 127/295 (43%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  VA  G F+ A   L +++S +S ++  LE  +G+ LF R  R + LTE G
Sbjct: 9   DLNDLYYFAAVAEHGGFSAAGRVLGVAKSKLSLRVLQLEQRLGVLLFQRTTRKIQLTEVG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++       +  +    Q  +  SS  P+G +RI+      +  L   L +F+  YP +Q
Sbjct: 69  ARFLEHCRSLVAEAHAAQDAIDFSSSGPTGLIRISCPAGAAEIYLTPWLSQFMAQYPRVQ 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           IQL   ++ +D+  +  D A+RLR     +  L+ R+  T      A+P YL+      S
Sbjct: 129 IQLQASDRVMDLVAEGIDVALRLRPESSMAPELVTRRYGTSRRILVASPAYLERHPAIQS 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L   + I+  +  P  ++ +  +              L  + +   MQ    G G+A
Sbjct: 189 PDDLKHADTISLLEEAP--LQQWELIGPESEVRTIELRPRLMASVWSLAMQATRDGQGVA 246

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LL     +   +  +L +++ +       V+  +P        ++A  +F+  + 
Sbjct: 247 LLSALGCRSALECGDLRQVLPEWAARELVVHAVFPTRRGMVPAVRALLDFLSDRL 301


>gi|21231049|ref|NP_636966.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768946|ref|YP_243708.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188992060|ref|YP_001904070.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112677|gb|AAM40890.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574278|gb|AAY49688.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733820|emb|CAP52026.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 339

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G
Sbjct: 8   DLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +HR    +  + +  +  +   S +P G +R++  + L Q  L   L +FL  YP ++
Sbjct: 68  TSVHRHAQTMLAEAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPQFLGKYPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL + N+ +D+  +  D A+R+R  +    SL+ R    +     A+P YL     P  
Sbjct: 128 LQLNISNRRVDVINEGYDVALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKD 187

Query: 183 IQELDKH-NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H  + T  D   +  E       + R   +PR++      +  +      G GI
Sbjct: 188 PGELANHTTMSTSEDEAHQRWELHGPNGEMRRVDLQPRLAGF---DFPLLQSMARDGFGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP+ +  +   N  L  ++     P    +  +         ++ F +F+  
Sbjct: 245 TMLPETVCAEAVRNGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 298


>gi|254524783|ref|ZP_05136838.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219722374|gb|EED40899.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 299

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 130/294 (44%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L+ F   A + SF        +S S+  + ++ LE  +G++LF+R  R +TLT +G
Sbjct: 6   NLANLQTFVHAADTRSFVETGRLQGISASAAGKCVARLEHALGVRLFHRSTRSITLTAEG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +  + +  + EL +    P G LRI     L  +L    + EF+  YPDI+
Sbjct: 66  QLFLARCRRILDERDAARTELAQPHATPRGTLRIGLP--LVGDLTLPLMAEFMAAYPDIR 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ +D+  +  D  +R+ +P   S +  R+L        A+P YL+    P + 
Sbjct: 124 LDLDFSDRLVDVIEEGFDAVLRVGEP-SDSRMNARRLGVFPRRIVASPGYLQQRGIPRTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H L+ +       +E +      D    E  +  +  N+  + +   +   G+A 
Sbjct: 183 AELMQHTLLHYRFPSTGKLELWPIHWPEDETPQELPVH-MVANTIEARVALALRHVGVAF 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +P + V+D   +  LV ++++ +      +  +P       KL+ F +F+  + 
Sbjct: 242 VPVHSVRDALADGRLVTVLDEHVHSCGIFHLLWPSGRHVLPKLRVFIDFVSARL 295


>gi|259414963|ref|ZP_05738886.1| LysR substrate binding domain protein [Silicibacter sp. TrichCH4B]
 gi|259349414|gb|EEW61161.1| LysR substrate binding domain protein [Silicibacter sp. TrichCH4B]
          Length = 306

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ VF  V  SG+FT AAE L + +S++S  +  LE  +G++L  R  R +  T+
Sbjct: 1   MDRIQQMNVFIQVVESGNFTRAAEALGVPRSTVSSTVQALEDRLGVQLLQRTTRVVRPTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +       +   +   + + ++     SG+LRI     + + L+  +L++F   YP 
Sbjct: 61  EGLQFADTARGLVDAMAQAEGQFRQRPDAISGRLRIDMPSRIARRLVIPHLQDFRAQYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++   ++ ID+  +  D  +RL   +Q S LI RK+  + M   A   YL     P 
Sbjct: 121 VTLEISATDRMIDLMSEGIDAVVRLA-VLQDSELICRKIGDVPMLTCAGAGYLAEFGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H+L+ +   +P    +++ L    R I     S L V++    +   + G G+
Sbjct: 180 TPADLADHHLVNYALRMPAVSSEWDGLED-GREIAVAMQSHLCVDNAECYIAGALHGHGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V D+     LV ++         +   Y        +L+AF +++  
Sbjct: 239 IQVPVYDVADDIAAGRLVEVLSKYRPSPVPITILYARRRHLALRLRAFMDWLQE 292


>gi|299533674|ref|ZP_07047048.1| LysR family transcriptional regulator [Comamonas testosteroni S44]
 gi|298718396|gb|EFI59379.1| LysR family transcriptional regulator [Comamonas testosteroni S44]
          Length = 304

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 129/297 (43%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A+  L   +S +SR+I+ LE  +G++L +R  R  ++T
Sbjct: 1   MQQDLNDLMYFAHVVDHGGFAPASRALGEPKSKLSRRIASLEARLGVRLLHRSTRHFSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+  +R    +    +  Q E+++   +P G +R+   I L  + +   + EF+ L P
Sbjct: 61  DIGASYYRHCKAMLLNAKAAQEEVEQVFSEPCGVIRVCCPIALLHSRVTSIVVEFMSLNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +++ L   N+ +D+  +  D AIR R  P++ SSL  RKL        A+P + ++   
Sbjct: 121 KVEVHLKGINRPVDLVAEGYDIAIRARTPPLEDSSLAMRKLAQRDWCLVASPSFCQHFPI 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L          L  +    ++ +                 +   S+    + G 
Sbjct: 181 PTVPADLADLP-----SLSDERDHKWHLIGPGGVVASIAHRPRFVTDDMYSLRAAAIAGM 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+  LP  I++   +   LVR++ +  +    ++  +P        ++ F +F+  +
Sbjct: 236 GVVHLPSMILEGELERGELVRLLPEWSSKGALIHAVFPTRRGLQPAVRKFLDFLAER 292


>gi|90410774|ref|ZP_01218789.1| putative transcriptional regulator [Photobacterium profundum 3TCK]
 gi|90328405|gb|EAS44703.1| putative transcriptional regulator [Photobacterium profundum 3TCK]
          Length = 292

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 140/290 (48%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T A+ +  +  ++++R+I  LE  + ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRMVVENGSYTGASRKTQVPVATLTRRIQALEECLNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K +   + +  +L  T   + E     +GKL+IA   +L + LLQ  L  F+L +P I
Sbjct: 61  GQKFYDDCAPLLQQLVDTTEHISEECKGAAGKLKIAAPSNLTKVLLQPMLNAFMLKHPAI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L + ++   +     D   R+  P + S+LI R++  +     A+P YLKN  EP  
Sbjct: 121 NIELHMSSEPEQLDPTDWDIMFRVG-PQRDSTLIARRISAVKDILVASPIYLKNNPEPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H L+    L+   + D N        +        + N    + + C  G GI 
Sbjct: 180 AQDLHDHTLLKGNPLLRWRISDHN-----GDTVTINERGHFEANQLNVVRKACCAGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L+PD +++   ++  LVRI+++       VY  Y        KL+ F  F
Sbjct: 235 LMPDVMLEQYIESGELVRILDNWSANPREVYILYNHRDYQPEKLRLFIEF 284


>gi|154706329|ref|YP_001424200.1| transcriptional regulator, LysR family [Coxiella burnetii Dugway
           5J108-111]
 gi|154355615|gb|ABS77077.1| transcriptional regulator, LysR family [Coxiella burnetii Dugway
           5J108-111]
          Length = 292

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 130/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++ +FY VA   SF+ AA +L +S+  +S QI+ LE ++ +KL +R  R LTLTE+G+
Sbjct: 4   LNQMEIFYFVATWKSFSRAALELGVSKGYVSTQITALEKDLMVKLLHRTTRHLTLTEEGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++ H+ +     L+ES  +PSG L++     +    L   L +F   YP I +
Sbjct: 64  LFLESCAKIVHEKKLAISLLKESQAEPSGHLKVTAPPSMCNTFLTELLPKFQKKYPKISL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +   ++     D A+R+       + I R + T      A  +YLK    P +  
Sbjct: 124 TIDPSSTVKNLLQHGIDLALRIT-TTPDENYIARMITTFRFVVCATSNYLKQRTIPKTPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +     +    F      +          L  ++ L I +  +   GIA L
Sbjct: 183 DLSQHNCLIYSADPIQNRWPFQ---IKNSTKIVTVKGSLVSSNSLIIKKALLANQGIARL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P YI+    +   L  +  + +     VY  Y  A+K   K+K F  F+
Sbjct: 240 PQYILTKEIEEGKLEVLFSENMKIEMPVYAIYASAVKLPPKIKCFIAFL 288


>gi|329916431|ref|ZP_08276380.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327544724|gb|EGF30148.1| transcriptional regulator, LysR family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 308

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 137/292 (46%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L ++      GS + AA +   +QS++S+ I+ LE  +G++L  R    L  T 
Sbjct: 1   MDTFKCLALYVRSIELGSMSAAARERGTTQSTVSKAITALEKRLGVRLLARSTTVLVPTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG   +     V  + +  + E +  + +P+GKLR+     LGQ  +   ++ FL  YP+
Sbjct: 61  QGQLFYERAKRVLEEFDEAEAEARGMTERPAGKLRLNVPSALGQFYVADLVRTFLRTYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L L+++ +D+  +  D A+RL   +   + + R + T   +  AAP YL+  R  +
Sbjct: 121 VEVELTLNDRMVDLLEEGVDVALRLGGKLPPDA-VARYVGTSVRYLVAAPAYLQG-RAIV 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L   + I F  L      D   L+   + +     +   VN+ L I    + G G+
Sbjct: 179 TPEDLATQDYIRFAWLDGG---DMVELSNGVQKLTVATRARFAVNNALLIRDALLAGDGV 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L P ++  D   +  LVR++ +   PS  +    P       + + F +F+
Sbjct: 236 GLCPSWLASDSLASGKLVRVLPEWSGPSQQLTLLTPSRRYQPLRARLFIDFM 287


>gi|311280115|ref|YP_003942346.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308749310|gb|ADO49062.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 305

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + +S++IS LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAVVAEELGVSPAFVSKRISLLEEMLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   ++    EL        G LRI +++  G+ ++   L      YP +++
Sbjct: 67  RIYEWAQSILQDVDQMIDELSNQRQVTQGTLRIISSMGFGRRIVAPALSALSRQYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ ID+  +  D  IR+   I + +LI RKL   H    A+  +L     P  + 
Sbjct: 127 RFDVEDRIIDLVNEGVDLDIRVGDEI-APNLIARKLADNHRILCASADFLAKHGTPKQLS 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L + +          L  N    + Q+C+ G G+AL 
Sbjct: 186 DLPVLPCLVIKERDHPFGVW--QLHSREGVHSIKVTGPLSSNHGEIVHQWCLDGQGVALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             + V +   + +L+ I+ +   P+  ++  Y   L  + K++    F+    ++
Sbjct: 244 SWWDVSENIASGHLIHILPEYYQPA-NIWAVYVSRLATSAKIRTTVEFLRQYFQE 297


>gi|187924106|ref|YP_001895748.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715300|gb|ACD16524.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 319

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 122/298 (40%), Gaps = 10/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ VF  +   GSFT A+++L +S  ++SR ++ LE  +G +L  R  R +  TE
Sbjct: 1   MDRLREMEVFVAIVDGGSFTSASDKLGMSAPAVSRALTSLEARLGAQLLARTTRSVRPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        +V   +   + ++      P G L I+  +  GQ  +   +  +   YPD
Sbjct: 61  AGMSYLDACRKVLDAVTDAEADVAACQDNPVGTLTISAPVLFGQRFIAPLIDAYAQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I  +  ++   +  +  D AIR+   +  SS+    L  +    Y AP YL    EP+
Sbjct: 121 VSINAVYVDRTTRLLEEGVDVAIRIGH-LGDSSIYAIPLGFVRRRTYVAPAYLAAHGEPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             +EL  H+ ++   +         W    +      R+   + VN   + +   V   G
Sbjct: 180 HPRELADHHCVSLTGVT----NPLEWTFYENGSRLSVRVQPRMIVNLAPAAVMAAVDRVG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  L  Y       N  L+ ++      S  V   + E    +GK++AF  F+    R
Sbjct: 236 ITQLFSYQAAPEVLNGTLLPVLTAFEPESTPVNLLHVERRGASGKIRAFVEFVTETLR 293


>gi|121604447|ref|YP_981776.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593416|gb|ABM36855.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 309

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  VA  G F  A   L L +S +SR+++ LE+ +G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVAERGGFAAAGRALGLPKSRLSRRVAELESRLGVRLLQRTTRKLSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R  S +  +       +    V+P G LR+   + L Q+ L   +  +L L+P ++
Sbjct: 63  DIYLRHCSAMRDEALAAAEAVAHLQVEPRGMLRVTCPVTLAQSTLGYLIPRYLALFPLVK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L + N+ +D+  +  D A+R+R  +  S SL+ ++L     H  A+P  L+    P +
Sbjct: 123 LDLRVTNRVVDLVEEGIDIALRVRPTLDDSGSLVVKQLGATCGHLLASPEQLRRQGTPAT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L + + +       +    +  +    +            +   ++    + G+GI+
Sbjct: 183 LEDLARLDTVAMSATDGRSA--WVLVGPDGQEFVFQHQPRYVADDLQTLKLAVLAGTGIS 240

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+++ +       LV ++          +  +P        +++F +F+
Sbjct: 241 FLPEFLSRAELQAQLLVPVLPGWAPKPGMAHAVFPSRRGQIPAVRSFLDFL 291


>gi|183600698|ref|ZP_02962191.1| hypothetical protein PROSTU_04290 [Providencia stuartii ATCC 25827]
 gi|188019800|gb|EDU57840.1| hypothetical protein PROSTU_04290 [Providencia stuartii ATCC 25827]
          Length = 303

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 130/296 (43%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +D + L  +  V   G F+ A   L + +S +SR+I+ LE ++ + L YR  R   +T
Sbjct: 1   MRYDLNDLYYYVKVVEHGGFSQAGLALGIPKSKLSRRIADLEQKLNVSLIYRSTRQFHVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   ++    V  + +  +  +      P G ++++  + L Q  LQ  L +F++ YP
Sbjct: 61  EIGQTFYQQCKNVVDEAKIAEELICSVQTDPKGIIKLSCPVALLQVYLQDLLVDFMVKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I +Q++  N+ +D+  +  D A+R+R  P+  S L+ + L        A+P   K    
Sbjct: 121 EIDVQILAVNRPVDVISEGLDMALRVRSLPLDDSGLMMKVLGYSRRVLVASPLLFKGGEP 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               +EL  + ++   +             + D    +  I  L     L++ +  + G 
Sbjct: 181 LQQPEELVNYPIL--ANTEHSQNYTVTLKNSEDLSFTQHFIPKLATTDILTLYKAALKGI 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA LP  +V+ +     L+ I+ +   P   ++  YP        ++   N++  
Sbjct: 239 GIARLPYGVVEKDLSSGALIEILPEWRFPEDIIHAVYPSRKGLLPSVQLLLNYLAE 294


>gi|168260116|ref|ZP_02682089.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205350884|gb|EDZ37515.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 301

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVSRPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGEDYAMRMQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++  +    +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLRSGALVTCMDNH-SYDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|332532582|ref|ZP_08408459.1| putative transcriptional regulator, LysR family protein
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038003|gb|EGI74451.1| putative transcriptional regulator, LysR family protein
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 295

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 125/295 (42%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  V   GSF+ AA  L    + +SR +S LE  +   L  R  R L LTE+G  
Sbjct: 8   EDLETFITVVDCGSFSGAANLLDQQVAKVSRAVSRLENTLQCTLLNRTTRRLELTEEGHT 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   E  + L T +  ++     PSGKLRI        + L   + EF   YP I + 
Sbjct: 68  FIKYAREGLNTLYTGEEAIKLLKHAPSGKLRIDAASPFVLHQLTPLIGEFAKQYPHITLD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +  ID+     D AIR+   ++ S+L  RKL +  +   A+P Y+KN      I +
Sbjct: 128 ITSHDSIIDLLEHKTDLAIRIGD-LKDSNLHARKLGSSQLRIVASPEYIKNNATITQIDD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H +I F D            A             L  +S  ++ Q C+   G+ALL 
Sbjct: 187 LQNHKIIGFSDSPKLNTWPLVRPALF--------TFSLSASSGETVRQLCIANQGVALLS 238

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294
            +++ ++     LV ++   ++       V   Y +    + ++ AF +FI  + 
Sbjct: 239 HFMIGNDLKTGKLVEVLPSAVSSPNNREVVQAVYYKNSAVSSRIVAFLDFIKPRL 293


>gi|332284153|ref|YP_004416064.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428106|gb|AEC19440.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 328

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 12/292 (4%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D    L+ F  VA   SF  A  QL +S +++SR I+ LE ++G++L  R  R + LT
Sbjct: 30  TMDQLRTLKTFISVAEHASFAEAGRQLSMSPTTVSRAIAALEADLGVQLLMRTTRSVRLT 89

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+           +++     ++     P G L +   +  G+  +   + E    YP
Sbjct: 90  DEGADFLTRCRAGIAEIDGAFTTVRGGRSIPRGILTVTAPVMFGRLHIMPVVVELSQQYP 149

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q++L+L ++ +++  + AD AIR+   +  SSL   +L  +     A+P YL     P
Sbjct: 150 DLQVRLLLLDRVVNLIDEGADIAIRIAD-LPDSSLHMLRLGEVRRIFSASPAYLAARGRP 208

Query: 181 LSIQELDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            S+ +L  H++I   D   P      N +    R +       L VN+  + +   V G 
Sbjct: 209 TSLADLRDHDMIWGEDEYGPHRGWGLNGVKWPSRQV------RLSVNNMDAAISAAVSGL 262

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+     Y +        L  +  D   P   +   +    K+   ++AF  
Sbjct: 263 GVVRTLSYQIAGEVATGRLEHLFADDAAPVLPISLLFQSGRKSHPNVRAFIE 314


>gi|107026997|ref|YP_624508.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691806|ref|YP_837339.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896371|gb|ABF79535.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649806|gb|ABK10446.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 122/275 (44%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMERRAGVTLVNRTTRRMMLTPEGDVYLEYARRILDQMDELGELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G LR+  T+  G++ +   +  F+  YP++ +QL L      ++ D  D  I
Sbjct: 87  GSAKQRPKGLLRVNATLGFGRSHVGPAISRFVARYPEVSVQLQLSVMPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L        AAP YL     P +  +L +HN I    GD      
Sbjct: 147 RFGEP-PDTRVVARRLAPNRRLLCAAPAYLARHGVPGTPHDLTRHNCIGIRQGDEGYGVW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
              +                L  N     +++ + G GI +  ++ ++D   +  LV ++
Sbjct: 206 RLTSGRGAARHTEAVRINGNLTTNDGEIAVKWALDGHGILMRAEWDLRDYLADGRLVVVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D  TPS  +Y  Y +  + + +++AF +F+  + 
Sbjct: 266 PDHETPSADIYAVYAQRHQMSTRIRAFVDFLAEEL 300


>gi|327480732|gb|AEA84042.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166]
          Length = 311

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R F  V  +GSFT AA Q   S + +SR +S LE  +  +L  R  R L LT
Sbjct: 1   MDM-LHAMRAFVRVVDTGSFTAAARQTDTSTAQVSRLVSELENHLHARLLQRTTRRLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++    + E+  +L+  + E   + + P G+LR+ +T  LG  LL G    +   YP
Sbjct: 60  EVGARFLERSREILAQLDDARQEACGAHLMPRGRLRVHSTTGLGIQLLSGLAGHYCERYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L L  +  D+     D  I L + +  S LI ++L  +     AAP YL+    P
Sbjct: 120 EVSLDLSLSQRQPDLLEAGLDVIITLSRDLPDSELIAQRLGPVFHVVCAAPSYLQRHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  +   D  P   +D++++      +  P     +VN   ++      G G
Sbjct: 180 RRPTDLHDHRCLRLLD--PVFADDWHFVGNGVEEVIRPG-ETFKVNVAEAMASAAEAGMG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I LLPDY+         L+R++         ++  YP       K++ + +F+    
Sbjct: 237 ICLLPDYVAAPALQRGTLLRLLPQYRLQEKQIHALYPSRRFLDAKIRTWLDFLAQAL 293


>gi|330808819|ref|YP_004353281.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376927|gb|AEA68277.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 295

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 134/287 (46%), Gaps = 9/287 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  +AR GSFT AA  L ++QS++S+ +SGLE  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLSFVTIAREGSFTRAASVLGVTQSALSQAMSGLEARLEIRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +     + ++E    EL E   KP+G +RI     + +  L   L   LL YPDI+
Sbjct: 65  ERLLKAIGHRFDEIEAELDELTEMRDKPAGTVRITCGEHILRAHLLPKLTPLLLDYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLS 182
           I+  ++    DI  D  D  +R+   I    ++   +   + M A A+P Y +    P +
Sbjct: 125 IEFDINYGFRDIVADRFDAGVRMGDTI-DKDMVAVPIGPQLRMAAAASPTYFERHPTPKN 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L KH+ I         +  +       +P+       L  N+  S++   + G GIA
Sbjct: 184 PRDLLKHSCINQRMQTAGGLYVWE-FERRGQPLNVRVDGQLVFNTSPSMVDAALAGLGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            LP+       +N  LVR++ED   P    +  YP   + +   +AF
Sbjct: 243 YLPEEEFAPHLENGRLVRVLEDWCAPFPGYHLYYPSRRQPS---RAF 286


>gi|312962505|ref|ZP_07776996.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311283432|gb|EFQ62022.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 307

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 120/301 (39%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +  +  F   A  GSF  AA  L L+ +++ + ++ LE  +G++LF R  R LTLTE G
Sbjct: 3   SFGSIECFVRSAEGGSFAEAARHLSLTPAAVGKSVAKLEARLGVRLFQRSTRRLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        ++     L  +  +P G L+++     G   +   L  F+  +PDI 
Sbjct: 63  KLFLEEVGGSLITIQNAVANLASAEGRPVGTLKVSMGTVFGNRYVVPLLGAFMARFPDIS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+     D AI     +    ++ RKL   H    A+P YL      L+ 
Sbjct: 123 PDWHFDNRQVDLIGQGFDAAIGGGFELP-QGVVARKLTPAHRVLVASPDYLAKRPPVLAP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           + L + N I      P+      W  T       P      + ++   +       G GI
Sbjct: 182 EGLARCNGILIRS--PQTGRVRTWQLTSIERDHSPLSLKPGMTMSDSEAACCASAQGLGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           AL+   +     D+  +VR++ D       +   Y E     GK +AF +FI  +  + +
Sbjct: 240 ALVSMPMAVPFLDSGAVVRVLPDWYVDDGNISIYYAEHKLLPGKTRAFVDFIIEQFAERQ 299

Query: 299 F 299
            
Sbjct: 300 L 300


>gi|195940570|ref|ZP_03085952.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. EC4024]
          Length = 294

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 13/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   + +F V+A + + T AA +L +S  S+SR ++ LE ++G  LF R  R ++LT +
Sbjct: 1   MNLKDVELFTVLAETCNLTQAARRLGMSAMSVSRHLAQLEKDLGTLLFQRTTRAVSLTSE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +    ++ ++   E +   SG L+I     +G+  +   + E +   P +
Sbjct: 61  GEEFLPYARTMLEAEQSARVMFNEDTAGASGLLKITAPSGIGRRYILPLMPELMEQNPKM 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L +  +DI     D AIR+  P++ S+LI  +L +      A+P YL     P +
Sbjct: 121 KVDLNLSDDVVDIVGHGYDVAIRVA-PLRDSNLIAHRLSSNPRVLCASPDYLSQFGIPTA 179

Query: 183 IQELDKHNLITFGDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + EL  H  +    +     M+D N ++ +  P           N+   +   C  G+GI
Sbjct: 180 LTELINHQCLRTAMVSQWTFMKDGNLISHIFEP-------RFICNNVEGVRSICKAGAGI 232

Query: 242 ALLPDYIVK---DNPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L    ++    +  LV I + D       ++  +P       ++  F + +
Sbjct: 233 AQLTKADIQTELASGELVEINLLDAQPHMLAIWALFPTKRYLPCRVTVFLDAL 285


>gi|167893084|ref|ZP_02480486.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
          Length = 274

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 69/270 (25%), Positives = 126/270 (46%), Gaps = 7/270 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA + SF  AA  L +S S++ ++I+ LE  + ++LF+R  R + LT +G++    
Sbjct: 9   VFVQVAETRSFVAAARALGVSASAVGKRIARLEARLNVRLFHRSTRSIALTAEGARFLER 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              V  ++E  + EL  S+  PSG+LR++         +   L +F+  YPDIQ+ L   
Sbjct: 69  CRRVLAEIEEAEQELSRSAHAPSGRLRVSLP--ALGAPVLPVLADFMAAYPDIQLDLDFT 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D  +R  +P + S L  R+L T       +P Y      P +  +L  H
Sbjct: 127 DRLVDVIDEGFDAVVRGGEP-RDSRLSARRLGTFAQVVVGSPDYFARRGTPRTPADLAHH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             + +       +E +           EP  S +  N+  + + + + G G+A +PD+ V
Sbjct: 186 TCLLYRFPTTGKLERWPLRPAPGDADVEPPRS-MICNNVETRVCFALRGRGLACVPDFAV 244

Query: 250 KDNP---NLVRIMEDVITPSFTVYFCYPEA 276
           +D      L  +++  I    T +  +P  
Sbjct: 245 RDELASARLRTVLDAYIERPQTFHVLWPSG 274


>gi|167549830|ref|ZP_02343588.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205325033|gb|EDZ12872.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 301

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLDVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++       +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNHF-YDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|91779296|ref|YP_554504.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691956|gb|ABE35154.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 303

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 131/295 (44%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  +  + SF+ AAE L L +SS++  I  LE E+G  L  R  R L+LT+
Sbjct: 1   MDKLQAMATFVRIVEAQSFSKAAETLSLPRSSVTTTIKSLERELGTTLLRRSTRTLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  ++   + EL   +  P G++R      +G+ ++   L EF   +P 
Sbjct: 61  AGERYYMSCRAILAEIARVEGELSADTASPRGRVRADMPGVIGRAMVLPRLHEFAQRFPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L L ++  D+  D  DC IR  + +  SSL  ++L  +     A+P YLK   EP 
Sbjct: 121 IELVLGLSDRPADLIYDGIDCVIRTGE-LADSSLTAQRLGELSWITCASPRYLKAHGEPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++  L+ H+ + +  +        +W   V    +     S   VN   + +Q  + G G
Sbjct: 180 TVSALNDHHAVNY--ISNATGRPLDWRFHVQGEDLAIAMQSRFAVNETEAYLQCGLEGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  L +++      +  L  ++    + +  V   YP     +G  + F ++I  
Sbjct: 238 LIQLSEFVALPYLKSGRLKEVLATARSSAVPVSIMYPHGRNASGATRTFVDWIAE 292


>gi|27379132|ref|NP_770661.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27352282|dbj|BAC49286.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 297

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 134/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R+F  +    SFT AA  L + +S+ S  + GLE+ +G +L  R  R +T T 
Sbjct: 1   MDRFDAMRLFVRLVERQSFTAAAADLGIPRSTASEVLRGLESRLGARLLDRTTRHVTPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +  ++E  +  ++++  +P G LRI     L +  +  +L  FL  YP 
Sbjct: 61  DGEDYYRRCVAILAEVEEAETAMRDA--RPRGLLRIDAHPLLTRTFILPHLPAFLARYPQ 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +Q+   ++ +D+  +  DC IR  +P + S +I R+L TI     A+P YL +   P 
Sbjct: 119 LDLQIGQGDRLVDLVREGIDCVIRSGEP-EDSGMILRRLGTIAEITVASPAYLASHGVPR 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   LD H ++ F       +      +           S ++VN+  ++     LG G+
Sbjct: 178 APDTLDGHQMVAFVSSRTGDVLPLE-FSVPGALHHVVLPSRVRVNNSDTMADLARLGFGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A  P Y   D+     LV ++ D       +   Y +  +   +L+ F ++I
Sbjct: 237 AQAPRYRFADDLASGALVEVLADYPPSPTPLSALYLQNRQPALRLRVFLDWI 288


>gi|217972722|ref|YP_002357473.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217497857|gb|ACK46050.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 312

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 131/298 (43%), Gaps = 10/298 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +   L+ F  V  S S++  A +  +S S ISR IS LE  +G +LFYR+ R +  TE
Sbjct: 6   SINMRALKFFIGVYDSKSYSVVARKEGVSPSMISRVISQLEDSLGQQLFYRNTRAIIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +L   + EL + +++P G +RI   +  GQ  +   L  FL  YP 
Sbjct: 66  SGRIFIEYARSMADQLNEVRNELLDRTIEPKGLIRINAPVFFGQRHIAPWLAGFLRRYPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L   +  ID  +  AD   R+   +  SSL  R L +   H  A+  Y+     P 
Sbjct: 126 VQVELTQTDDYIDPHVSAADIIFRIG-TLVDSSLHSRILGSQTYHLAASKAYIALHGMPT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L+ H  + +     +    FN   T    + +P    L  N+  +++   +   GI
Sbjct: 185 EPADLNNHQCLVYSGSSGQNRWFFNKNKTT--WLHQPITPILTSNNAETLLIAALNDMGI 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            L PD+++ D+     L+ ++ D  +        +   YP +   +  ++A  ++   
Sbjct: 243 VLFPDWLIGDSLKNGQLISLLTDCESAIKIDQHYITAIYPNSRTPSLNVRAVIDYFLE 300


>gi|194367167|ref|YP_002029777.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194349971|gb|ACF53094.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 294

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VAR  SF  A  +L LS S++S  I  LE  +G+ LF+R  R + LTE G
Sbjct: 5   NLSHLAAFAAVARHRSFRRAGAELALSTSAVSYAIRALEERLGVGLFHRTTRSVALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++     E+ +    P+G LRI  T       L   L  FL  +PDI+
Sbjct: 65  QRLLERLQPALGQVHDALEEMNQFRAAPAGLLRINATRAAVPTQLGPRLARFLHAHPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI  +  D  +RL + +    +       +      AP YL+    P   
Sbjct: 125 VELTENDGLVDIVAEGYDAGVRLHEFVPEDMVAVPMGPPLRGLIVGAPDYLRRHPAPRHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I F          + W    +    E  +   L +    +++   + G G+A
Sbjct: 185 RDLAAHECIRFRFA---SGHLYKWQFEREGQALEIDVPGRLTLGEQGTVVSAVLDGIGLA 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + +   +   D+  +V ++ED   P       YP+  +    L+AF + +  
Sbjct: 242 YVLEDTARPYIDSGQMVAVLEDWSEPFAGFALYYPKQRQMPAALRAFVDMLRE 294


>gi|94500346|ref|ZP_01306879.1| probable transcription regulator protein [Oceanobacter sp. RED65]
 gi|94427645|gb|EAT12622.1| probable transcription regulator protein [Oceanobacter sp. RED65]
          Length = 326

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 130/295 (44%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++ VF  V + GSFT AA QL + +S +SR I+ LE ++  +L  R  R +  T+ 
Sbjct: 2   LDLNQMSVFIAVVKEGSFTGAARQLGIPKSRVSRMITDLEDKLNARLLERTTREVRPTDI 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++    ++ ++      + + S KPSG LRI   +    + +   + EF   YP++
Sbjct: 62  GLEYYQEYKPLFEEISDIHSRISDRSQKPSGHLRICAPVSFAFSAMGRWMAEFKSHYPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+  + D+ +  D  D    + + ++ SSLI RK         A+P ++K       
Sbjct: 122 EVELVFSDGDVHLVRDGFDIGFAIGE-LEDSSLIARKFDETSPVLCASPDFVKRYGPFNH 180

Query: 183 IQELDKHNLITFGDLI-PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L +   +  G     +   +F    T +    EP  S + VN     + +     G+
Sbjct: 181 PEQLREVPWVIIGSRHGHRHNTEFTHPETGETVEIEPDCSVM-VNHQEVAIHHLTASQGL 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++   +   +      L  ++ +       +   +P       K++AF +F   K
Sbjct: 240 SVTAAFFAYEQLLRGELQILLANWKIKQEPLQLVFPSGRHQAKKVRAFIDFFMEK 294


>gi|15829587|ref|NP_308360.1| transcriptional regulator [Escherichia coli O157:H7 str. Sakai]
 gi|189404069|ref|ZP_02786953.2| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|217324650|ref|ZP_03440734.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|13359790|dbj|BAB33756.1| putative transcriptional regulator [Escherichia coli O157:H7 str.
           Sakai]
 gi|189367730|gb|EDU86146.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|217320871|gb|EEC29295.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|320192377|gb|EFW67021.1| Putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. EC1212]
 gi|326343430|gb|EGD67194.1| Putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. 1044]
          Length = 308

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 141/302 (46%), Gaps = 10/302 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F ++ R+GSF+ A  ++ ++ +++S+ +  LE  +  KL YR  R +
Sbjct: 2   MKIEPSILPSLAWFALIVRAGSFSRAVSEMGITLAALSQNLKSLEERLNTKLIYRTTRNI 61

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE+G +L+ V      +++    ++ ++ ++P+G LRI ++    + L++ ++ EFL 
Sbjct: 62  SLTEEGQRLYEVLVSALGQIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLT 121

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKN 176
            YP  +I+LI+D+   +I  D  D  IRL + +    +    +   I +   A+P YLK 
Sbjct: 122 RYPKTKIELIMDDGLSNIIADGCDVGIRLEQGL-DEHMTAVPVSPLIKLVTVASPDYLKE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQY 234
              P + QEL  HN +         +  + +   V                N   S+++ 
Sbjct: 181 HGIPETPQELSNHNCLRLRHKSSGALSAWEFSKVVGGNEEFEIEVSGKYISNDDESMIRM 240

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G+GI    D+ + ++     L  I+ED        Y      ++   K++AF +F+ 
Sbjct: 241 ALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFYIYVSSRVRMPSKVRAFIDFMV 300

Query: 292 LK 293
            K
Sbjct: 301 EK 302


>gi|293392623|ref|ZP_06636943.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291425025|gb|EFE98234.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 302

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 128/294 (43%), Gaps = 6/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V     F  A   L + +S +SR+++ LE  +G++L  R  R  ++T
Sbjct: 1   MLIDLNDLFFFASVVEHQGFAAAGRALGIPKSKLSRRVALLEERLGVRLIQRSTRRFSIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   ++    +  + E  Q  ++++  +P G +R++  I L    +   L  F+  YP
Sbjct: 61  DVGQNYYQHCKAMLVEAEAAQQAIEQTRAEPCGTVRLSCPIALLHTRVGDMLARFMADYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + + L   N+ +D+  +  D A+R+R  P++ S L+ + L        A+P  ++   +
Sbjct: 121 KVSLHLEATNRRVDVVGEGLDLALRVRPPPLEDSDLVLKVLAQRSWCVAASPALVRALGD 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               ++L ++  +  G   P+         T  R      +  L  +  L +    + G+
Sbjct: 181 VRQPEDLLRYPTLDLGPARPQHQWTLTGPDT--RRFDWEHLPRLVTDDMLMLRTAAIAGA 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  LP  +++D     +++ ++ D       V+  YP        ++   +F+
Sbjct: 239 GVVQLPSMMMRDQILRGDMMALLPDWRPQGGVVHAVYPSRRGLLPAVRLLLDFL 292


>gi|293394188|ref|ZP_06638488.1| HTH-type transcriptional activator AaeR [Serratia odorifera DSM
           4582]
 gi|291423166|gb|EFE96395.1| HTH-type transcriptional activator AaeR [Serratia odorifera DSM
           4582]
          Length = 303

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 129/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ V+  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVYAKVVECGSFTAAARQLDMSVSSISQTVSKLENELQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  ++     +L   +  P+G LRI ++  + QN+L     + L  YP + +
Sbjct: 64  IYYQGCRRMLQEVSEVHEQLYAFNNTPTGTLRIGSSSTMAQNVLATMTADMLKEYPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  ++L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSKRLGSMPMVICAAKSYLAQHGTPQKPN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA  
Sbjct: 183 DMVNFSWLEYSVRPDS---EFELIAPEGISTRISPQGRFVTNDSQTMIRWLKAGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +++++     +  + +   +    VY  Y E  K   K++   N++  
Sbjct: 240 PLMWVIEEIKRGEIEILFKRYHSDPRPVYALYTEKDKLPLKVEVCINYLTE 290


>gi|270262595|ref|ZP_06190866.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043279|gb|EFA16372.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 371

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 133/291 (45%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D L +F  +A   SFTHAAE L + +   S  +  +E  +G++L +R  R + LTE G
Sbjct: 72  DLDSLAIFVRIAEMASFTHAAESLGIQKGRASNVVRRIEAAMGVRLLHRSTRTVQLTEDG 131

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +    E        S     G+LRI    +L +  +   L  F+  YP+IQ
Sbjct: 132 RAFYNRARALLADAEELNSMFASSKTPLRGRLRIDLPTELARTPIVPALPSFMATYPEIQ 191

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +D+  +  DCA+R+ + I   +L+ +K+  + M   A+P YLKN   P ++
Sbjct: 192 LEISSTDRRVDLIQEGIDCALRIGE-IVDETLVAQKMGALSMVNVASPAYLKNHGMPHTL 250

Query: 184 QELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++L   +H +I +  ++      + +    D          + VNS  +     + G G+
Sbjct: 251 EDLSAQEHRMIHYAPILGSRPFGWEYPKG-DGYATLMLAGSISVNSVQTYHAAGLAGLGL 309

Query: 242 ALL-PDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                  +++  +N  LV I+ D+     TV F        + ++++F  +
Sbjct: 310 IQAGRSSLIEYIENGELVEILPDLRPEPLTVSFVVAHRQNLSRRVRSFMAW 360


>gi|224583832|ref|YP_002637630.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468359|gb|ACN46189.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 301

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 134/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L +T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLRIQLLQRTTRKLRVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++       +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNHF-YDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|186471537|ref|YP_001862855.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197846|gb|ACC75809.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 301

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D++ L  F  VAR  +FT AA QL +SQS++SR ++G+E  +G++L  R  R ++LT
Sbjct: 1   MKEDFNDLVGFMTVARERNFTRAAAQLGVSQSALSRTVAGVEKRMGLQLLARTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +  + ++E     L+  + +P G +RI TT       +   L+  L  YP
Sbjct: 61  EAGEQLLAAIAPRFEEIEAEVDSLRAMTNRPGGTVRITTTDYAANTYVWPRLQPLLREYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L+ D    DI  D  D  +RL   +    +  R    + M     P YL++  + 
Sbjct: 121 ELKVELVNDYGLADIVADRYDIGVRLGDQVAKDMIAVRIAPDMTMAIVGCPSYLESRPQA 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            + Q+L  HN I     +P      +W     R   + R+   L  N+   ++   + G 
Sbjct: 181 KTPQDLTLHNCINL--RLPTRDSLLSWELRKGRRELQVRVDGQLTFNNVYQMVDAALAGF 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A +P  IV+D+     L  ++ED        +  Y    K++  ++   + +
Sbjct: 239 GLAYVPKDIVEDHVRTGRLCWVLEDWYPTFVGHHVYYASRRKSSRAVELVVDAL 292


>gi|71278909|ref|YP_268060.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144649|gb|AAZ25122.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 318

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 5/294 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L++F      G F  AA  L LS S++S+ ++ LE  + IKLF R  R + LT+
Sbjct: 1   MDKLSLLKLFVNAVDHGGFAAAANHLGLSASTVSKGMARLEDNLSIKLFNRSTRQVHLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS+       +  +LE  + +L++++  P G++++   +  G+  +   L+EF  LYPD
Sbjct: 61  SGSRYLITARRIVLELEQCEQDLKQTNDLPCGQVKVNLPVSYGRLYVMPLLQEFTQLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + +  ++  +DI     D  IR  K +    L+ R L  I     A+P Y+     P 
Sbjct: 121 ITLDVSFNDSYVDILEQGIDLTIRTGK-LDDQRLVARMLSPIDFILCASPAYIAANDFPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E  +H+ I F       +              +P  S   VN   ++ + C  G G+
Sbjct: 180 CAAEYSQHSWIRFKYPQSGRLMPITVDEGHGVESYDPG-SQYIVNDGEALAELCAQGLGL 238

Query: 242 ALLPDYIVKDNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             LP +I +D      I+     +  S  VY  YP+      K+K    ++ +K
Sbjct: 239 TQLPHFIARDWLKSKSIVPISSFLRSSEGVYCVYPKREFLPTKVKVLIEYLLMK 292


>gi|271500821|ref|YP_003333846.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344376|gb|ACZ77141.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 302

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 125/287 (43%), Gaps = 9/287 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  +   GS T AA+ L +S++ ++R ++ +E     +L +R  R L+LT +G  + +
Sbjct: 8   QVFVTITEQGSLTGAADALEMSRAMVTRYLAEMERWAEARLLHRSTRQLSLTHEGETVLQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+            +   +P+G LR+  +  L Q  L   +  +LL YP   + L +
Sbjct: 68  HCRELLAVSHKL-DMPAKGRKEPAGLLRLTCSPSLAQATLVAAITTYLLRYPKTAVDLQV 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +  +++  +  D AIR+   +  S LI R+L        A+P YL     P  +++L  
Sbjct: 127 ASHTLNLIEERIDLAIRITNQL-DSGLIARRLGGCPSVVCASPSYLATHGTPQRVEDLAV 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        +           I  P       N  L +++  + G+G++L P Y 
Sbjct: 186 HNCLTYSFFGKSLWQ----FTRKGDAIAVPVSGSFSANDSLVLLEAALNGAGVSLQPVYS 241

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V D   +  L+ +  +       +Y  Y    + +  L+A  +F+  
Sbjct: 242 VTDLIASKRLIALFPESQPQELDIYAVYHSRERMSPALRALVDFLAE 288


>gi|218704990|ref|YP_002412509.1| putative LysR-family transcriptional regulator [Escherichia coli
           UMN026]
 gi|293404995|ref|ZP_06648987.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298380642|ref|ZP_06990241.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300895882|ref|ZP_07114459.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|301018666|ref|ZP_07182993.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|331663001|ref|ZP_08363911.1| LysR protein [Escherichia coli TA143]
 gi|218432087|emb|CAR12975.1| putative LysR-family transcriptional regulator [Escherichia coli
           UMN026]
 gi|291427203|gb|EFF00230.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298278084|gb|EFI19598.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300360184|gb|EFJ76054.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300399612|gb|EFJ83150.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|331058800|gb|EGI30777.1| LysR protein [Escherichia coli TA143]
          Length = 299

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 132/296 (44%), Gaps = 16/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGNISAAARKLEITPPSVSNALKLLEEYIGHPLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L   T+     LE +   +++   +PSG +RI  +      +L+  + EF   YP IQ+
Sbjct: 66  LLLEQTAAAVESLENSLESIRDQHQEPSGMVRITLSRFAYLLILKPAMAEFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           ++ + +  ++I  +  D  IR    ++   ++ R L+       YA+  YL     P   
Sbjct: 126 EISVYDGTVNIIKERFDLGIRFGDILE-GGVVARPLMKPFREGLYASSAYLSRHGTPEVP 184

Query: 184 QELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +L  H LI +       ++P  + D     TV+ P        L  N    +      G
Sbjct: 185 ADLCHHQLIGYRFITNNRILPLLLNDRGEQLTVEMP------GQLISNDIDVMADGIRNG 238

Query: 239 SGIALL--PDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GI  L  P + ++ D    + +ME        VY  YP+    T ++KA  +F+ 
Sbjct: 239 LGIGRLFEPVWQLQPDRERFIPVMESYWKTYPPVYLYYPKNAGKTKRVKALIDFLI 294


>gi|170724498|ref|YP_001758524.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169809845|gb|ACA84429.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 302

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 131/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GS T AA++L +S+S +S+ +  LE     +L  R  R + LTE G +L
Sbjct: 8   RMLVFANVVEQGSLTGAADELGISRSMVSQHLKKLELRCETQLIERTTRKMALTEDGQQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +E+    +  +   Q  S +  G++ + T I  G+  +  ++ EF   +P ++I L
Sbjct: 68  YHHCAELLLLAKQAEETTQPKSTELRGRVSLLTPICFGEQFITPHIGEFRRQFPKLEINL 127

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            LD++ I+   +  D AI+   +    +S I  KL     +  A P Y++    PL    
Sbjct: 128 QLDDRRINRLENSVDIAIQNETQQPTDTSFI--KLGQFDEYIVATPEYVQQHGSPLHPDM 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I          + F    +            +  NS   I Q    G+GIA+LP
Sbjct: 186 LLNHQWIL--QTSTHLPQSFLLENSYGDKFTIKVSPFICCNSRHGISQMVKQGAGIAILP 243

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            Y+V+D      L+ I+ D       VY  +P       ++KAF +FI +K +
Sbjct: 244 SYLVEDEIAQGELIHILPDYHLDEGGVYAIHPFDKVIPPRVKAFLDFIQIKMK 296


>gi|298717595|ref|YP_003730237.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361784|gb|ADI78565.1| Uncharacterized HTH-type transcriptional regulator yhjC [Pantoea
           vagans C9-1]
          Length = 294

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 127/295 (43%), Gaps = 4/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + L VF +VA++ +F  AAEQL +++ +IS+ +  LE  + I L  R  R + LT
Sbjct: 1   MNADKNALEVFVIVAQTRNFRLAAEQLGVTRPAISQSLRRLEDRLNISLMQRTTRSVQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L+   +   ++L     ++ E + +P G+LR+A +    + L    L  F+  YP
Sbjct: 61  EAGQRLYAEVAPAINQLNRAVTDIAELAAEPRGQLRLAISSIAERMLGGELLASFITAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + + +++ DI     D  +RL + I  + +           A A+P YL     P
Sbjct: 121 QVELDITVTDEEFDIVGQGYDAGVRLGEVIAQNMIAVPVSTAQRQVAVASPSYLARAGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL  H  I +          +   A   R         L  N    ++     G G
Sbjct: 181 QHPEELVTHRCIGWRKGPGLAPYRWE-FAEQGREFDVAVNPQLTTNDMGVMIHTACAGGG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I+       +   D   LV ++++ +      Y  +P       KL+A  + + L
Sbjct: 240 ISFGMQETFQPYIDRGELVTVLDEWLPSFAGFYLYFPSRKNLAPKLRALIDHVRL 294


>gi|104782124|ref|YP_608622.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95111111|emb|CAK15831.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 292

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 126/294 (42%), Gaps = 8/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  +   GS + A  +  LS +++S +++ LE   G+ L  R  R L LT++G 
Sbjct: 2   LDNLALFLAIIEKGSLSAAGRERGLSPATVSERLAALEAHYGVALLTRTTRSLNLTDEGR 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +  + +  +  ++  S   +G +R++  +DLGQN++   L  FL  +P + I
Sbjct: 62  VLADGARRLLAEADELEGRIRHGSENIAGLIRLSAPVDLGQNVIAPILDRFLADHPQVAI 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  ID+     D AIR    +  SSL  R L        AAP YL+    P    
Sbjct: 122 DLDLTDGYIDLVGQGIDFAIRYG-TLADSSLRARALGNNRRVVCAAPEYLQRHGIPAHPD 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIAL 243
           EL  H+ I     I     +  W   ++      R+S  +V N+   + ++ + G G+ L
Sbjct: 181 ELAGHDCIVMRFGI---HAERTWPFRLEGKAYPVRVSGRRVANNGEQVRRWALAGHGLCL 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                V+   D+  LV ++         +   YP       +++A    I  + 
Sbjct: 238 KSIRDVQADLDSGRLVEVLAAYGAGEIALQIVYPPTRVQPRRVRALAEVIVAQL 291


>gi|330969281|gb|EGH69347.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 315

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 13/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILASVEEAEAEASDAHARPAGQLKMHSMPGVGQHYVIDAIARYRRNHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K      
Sbjct: 121 VAFDLTMTHRVPDLLEEGYDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
              +L  H  +    L+        WL   D P G+  +    S L VNS  ++      
Sbjct: 181 KPADLLNHACL---RLVSPVFPLDKWLF--DGPEGQEMVTINSSPLLVNSADAMKTAISS 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+ +LP Y   +   N  LVR++ D  +    +Y  YP       K++ +  ++
Sbjct: 236 GMGVGILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPSRQYLDAKIRTWVEYL 291


>gi|126642344|ref|YP_001085328.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 311

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 124/260 (47%), Gaps = 8/260 (3%)

Query: 38  ISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI 97
           I  LE  + ++L  R  R ++LT  G+  +  T+ +   +   +    ++   P G+LRI
Sbjct: 5   IQALEKHLQVRLLNRTTRKISLTPDGAVYYDRTARILADVADIESSFHDAERGPRGQLRI 64

Query: 98  ATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQ 157
              + +G+ +L   L++F   YPDI + + L+++ +D+  +  DCAIR+ + ++ SSLI 
Sbjct: 65  DVPVSIGRLILIPRLRDFHARYPDIDLVIGLNDRPVDLVGEAVDCAIRVGE-LKDSSLIA 123

Query: 158 RKLVTIHMHAYAAPHYLKNCREPLSIQELD-KHNLITFGDLIPKCMEDFNWLATVDRPIG 216
           R++ T      A+P YL+   EP SI++L   H  I F     +   +F+W   VD  I 
Sbjct: 124 RRIGTFQCATAASPIYLEKYGEPTSIEDLQKNHKAIHF--FSSRTGRNFDWDFVVDDLIK 181

Query: 217 EPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFC 272
              +   + VN   + +   + G GI   P Y++    ++  L  ++         +   
Sbjct: 182 SVSVRGRVSVNDGDAYIDLALQGFGIIQGPRYMLTNHLESGLLKEVLPQWTPAPMPISAV 241

Query: 273 YPEALKNTGKLKAFRNFIFL 292
           Y +    + K+K F +++  
Sbjct: 242 YLQNRHLSLKVKVFVDWVAE 261


>gi|150376269|ref|YP_001312865.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150030816|gb|ABR62932.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 301

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 127/291 (43%), Gaps = 9/291 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  +R+F  V  SG F  AA+ LH+S  S++R ++ LE  +G +L  R  R L +T 
Sbjct: 1   MDRWQAMRIFVQVVESGGFAPAAKALHMSPPSVTRAVAQLEGLIGTRLLIRTTRSLKMTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  ++   +     S   P+G L +      G+  +   + +FL  YP 
Sbjct: 61  AGEGYLADCRRILAEIAEAEANAAGSFTAPAGLLTVTAPALFGRIHVLPVILDFLDAYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++ +  ++  ++  +  D AIR+   + +S LI R++ ++      +P Y     EP 
Sbjct: 121 MQVKTVFVDRVTNLVDEGLDVAIRIAS-LPASGLIARRIGSVRQVLCGSPDYFARFGEPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  EL  H +I    L         WL   D  I  P    L  N+  +++   V G G+
Sbjct: 180 SPHELAGHRIIGREGLFGHS----EWLFGRDSSIRIPISPRLICNTNDAVLSAAVAGWGL 235

Query: 242 ALLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +    Y V+ +    R+   + D       ++  + E    + +++AF +F
Sbjct: 236 SRFQSYQVEADIRAGRLKVALADYEREPVPIHIVHAEGRMVSARVRAFVDF 286


>gi|229592047|ref|YP_002874166.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
 gi|229363913|emb|CAY51419.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
          Length = 307

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 120/301 (39%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +  +  F   A  GSF  AA  L L+ +++ + ++ LE  +G++LF R  R L LTE G
Sbjct: 3   SFGSIECFVRSAEGGSFAEAARHLSLTPAAVGKSVAKLEARLGVRLFQRSTRRLALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  S     ++     L  +  +P G L+++     G   +   L  F+  +PDI 
Sbjct: 63  KLFLDEVSGSLTTIQNAVANLASAEGRPVGTLKVSMGTVFGNRYVVPLLGAFMQRFPDIS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+     D AI     +    ++ RKL   H    A+  YL      L+ 
Sbjct: 123 PDWHFDNRQVDLIGQGFDAAIGGGFELP-QGVVARKLTPAHRVLVASKDYLVQRAPVLTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGI 241
           ++L +          P+     +W  T       P +    + ++   +       G GI
Sbjct: 182 EDLAR--CAGILIRSPQTGRIRSWQLTSIEREHRPLVLKPSMTMSDSEAACCASAQGLGI 239

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           AL+   +     D+  +VR++ D       +   Y E     GK +AF +FI  +  + K
Sbjct: 240 ALVSMPMAVPFLDSGAVVRVLPDWYVDDGNISIYYAEHKLLPGKTRAFVDFIIEQFAEAK 299

Query: 299 F 299
            
Sbjct: 300 L 300


>gi|218673662|ref|ZP_03523331.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 300

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 138/294 (46%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G F+ AA    ++ S++S+ ++ LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERGGFSAAATVRRMTPSAVSKLVARLEARLGVRLVNRSTRRLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +   +   + +   S  + +G++RI T+   G ++L   +  F+ L+P + + +
Sbjct: 71  YERSIAILADIAEAERQ-ASSGEEAAGRIRINTSGSFGNHVLAPLVPAFMALHPAVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +K ID+  + AD AIR   P++SSSLI RKL        A+P YL    EP ++ +L
Sbjct: 130 AHTDKVIDLMEERADVAIRAG-PLKSSSLIARKLGATGKIIVASPDYLGRHGEPCTVADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I F     + +E +    +    +  P    +QV    ++    + G+G+A L  
Sbjct: 189 RRHCRIGFS--YARAIEGWPMRES-GETVTIPITPGIQVADGEAMRHLALSGAGLARLAA 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V+ +     L  ++ED         Y  Y  +      +++A  +F+    R
Sbjct: 246 FTVRADIEAGRLAPVLEDANPGDLEEFYALYIGQGGPLPARVRALLDFLAGHVR 299


>gi|34496588|ref|NP_900803.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34102442|gb|AAQ58808.1| probable transcriptional regulator LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 321

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 139/296 (46%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  + R GSFT AAE+L  ++S +S+ +  LE + G  L  R+ R + LTE G
Sbjct: 8   DAQALLAFDALVRRGSFTAAAEELDCTKSRVSQLVKALEKQFGTVLVLRNTRRVALTETG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L     E+   LE  +I++ E+  + SG L I++     Q LL   L E  +L+P +Q
Sbjct: 68  QRLAVHARELRSLLERARIDINEAEGEVSGPLVISSITSFAQYLLAPILAELAVLHPCLQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L ++N+  D   +  D  IR R  +   +L+ + L  +   A+A+P YL       + 
Sbjct: 128 LKLQVENRLQDPIAEGLDFCIRTRN-VHDDALVAKPLGLVREWAFASPDYLAKAPPLATP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I      PK  +   WL   D    + R+   L  + Y  ++   + GSG+A
Sbjct: 187 DDLPLHR-ILLDTSRPKLRDTPEWLLEKDGQQKQVRVQPVLSSHQYAPLLSAAIAGSGVA 245

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LLP Y+  ++     LV ++       + VY  YP       K +AF   +  + R
Sbjct: 246 LLPAYVASEHLRSGRLVPVLPGWSHDCWPVYLVYPYRHPLPRKYEAFIQHVVPRMR 301


>gi|213609501|ref|ZP_03369327.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 287

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 129/286 (45%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   +
Sbjct: 1   MSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+
Sbjct: 61  QGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L 
Sbjct: 121 TGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMLMVVCAAKPYLAQYGVPEKPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ + +     +   +F  +A                N  ++++++   G+GIA +P  
Sbjct: 180 SHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGTGIAYVPLM 236

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V D     +L  ++    +    VY  Y E  K   K++   N +
Sbjct: 237 WVIDEINRGDLEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINAL 282


>gi|212633326|ref|YP_002309851.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212554810|gb|ACJ27264.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 465

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 8/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F  VA  GS T AA +L +S +  S  +  LE E+G  LF R  R L LT+ 
Sbjct: 1   MQLNDLTLFVRVADCGSLTAAAVELDISTAVASAGLKRLEKELGTSLFIRSTRSLRLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L+  Q  +  S  + SG + +A   D+G+N++   L +FL  YP++
Sbjct: 61  GERYLIHCRSALADLDMGQRAITSSLAEISGSISLAVPSDVGRNVVLSWLDDFLSEYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L + +   D   D  D A+R  KP + SSL+  K+        A+P Y++      S
Sbjct: 121 NLRLHIGDNLSDFYRDKIDVALRSGKP-KDSSLVAFKICNSSRVLCASPEYIERVGAVTS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           +++L +HN + F   +        W  + D    + R+ S    N      ++ V G G+
Sbjct: 180 LEQLQQHNCLFF---MLDERTHDQWFFSRDGQKHKVRVTSNRTCNDADVARRWAVAGQGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                  + D+     LV ++ +       +Y   P     T  +   R+ +    + W
Sbjct: 237 VYKSWLDLTDDIDAGRLVPMLTEFAGEEADLYLVCPGREHVTPVVLLLRDMLRDHCKAW 295


>gi|293395466|ref|ZP_06639750.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422150|gb|EFE95395.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 298

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+L +F  V + GS   AA +L  S  +++R ++ LE  VG +L  R  R L  TE
Sbjct: 1   MDRLDELAIFVAVVQQGSLAAAARKLRRSAPAVTRAVASLEQRVGARLVERTTRRLAPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      V    +   ++   +  + SG LRI   +  G+  +   +  FL  YP 
Sbjct: 61  AGLRLAERACAVLGDYQQAVLDT--APTQVSGLLRITAPVQFGRKFVAPIVMAFLEQYPQ 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I++ L+++++D+  +  D A+R+      SS + R+L  +     A+P YL  C EPL
Sbjct: 119 IDIEMQLNDRNLDLIDEGLDIAVRIGHQ-HDSSRVARRLGWVRRVTVASPAYLARCGEPL 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H+ I            F      +R    PR   L +N   S +     G GI
Sbjct: 178 NPAQLTDHHTIIGTQHGALREWRFGPQENHERVRLTPR---LMLNDVESQLLAARAGQGI 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A L  Y V D+    +LVR++      +  V     +  +   K++ F +F F + 
Sbjct: 235 ARLLSYQVADDLAAGSLVRVLTSFEPQALPVQLVANQVQQMPLKVRTFWDFAFAQL 290


>gi|53717968|ref|YP_106954.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|126441320|ref|YP_001057397.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|167717745|ref|ZP_02400981.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167736776|ref|ZP_02409550.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167813878|ref|ZP_02445558.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167822396|ref|ZP_02453867.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167843983|ref|ZP_02469491.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167892487|ref|ZP_02479889.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167900986|ref|ZP_02488191.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167909202|ref|ZP_02496293.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167917237|ref|ZP_02504328.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|254182077|ref|ZP_04888674.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254188008|ref|ZP_04894520.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196436|ref|ZP_04902860.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|52208382|emb|CAH34316.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|126220813|gb|ABN84319.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|157935688|gb|EDO91358.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169653179|gb|EDS85872.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184212615|gb|EDU09658.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 320

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   +  +   Y D+ +++ 
Sbjct: 67  ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYADVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPATIADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ I      P        ++ V      P    + VN    +    + G+GIALL  
Sbjct: 187 QHHSFI---RREPNETLLDAAISEVAAASRVPMSGNVIVNHLEGLRVAVLGGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V ++     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFLADR 294


>gi|83648406|ref|YP_436841.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83636449|gb|ABC32416.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 306

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 133/291 (45%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +  F+ VA+ GSFT AA+ L+ S+S +S+Q+  LE  +  +L +R  R L LTE G 
Sbjct: 8   LEWVAAFHQVAQDGSFTQAADSLNSSKSQVSKQVKALEALLQTQLLHRTTRSLRLTEAGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L R ++E+          + + +    G LR    + LG +++   LK F L YP +++
Sbjct: 68  ALFRYSTEIQALFRQATEVVSDLNEDTVGVLRFTCPVSLGISMMPEILKLFRLRYPRVKV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+ L N+  ++  +  D AIR   P     L+ R L  +     A+P ++    +P + +
Sbjct: 128 QIDLANESRNLIAEEFDLAIRAT-PQPDPYLVARPLGAMVDAICASPEFITRHGKPETPE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +   I            F      +R I  P  + +  N Y  + Q  V G G+  L
Sbjct: 187 ELTRFPCIVHNQHQQLSQWRFT---GPEREISVPIQAEIAANQYPMMRQCAVEGLGVTKL 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P Y    +     LVR++ED  + + T++  +P       KL  F+  +  
Sbjct: 244 PFYEAYRDIQSGRLVRLLEDYPSHTHTLFVVFPAQRYQPKKLIYFKELLIE 294


>gi|144899149|emb|CAM76013.1| transcriptional regulator, LysR family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 310

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 140/288 (48%), Gaps = 6/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD L +F  +AR      AAE+L +  S++SR+I   E E+G +LF R+ +G TLT Q
Sbjct: 1   MDWDNLHIFLELARGRRLMDAAERLGIDYSTVSRRIRRFEQELGTQLFDRNNQGYTLTAQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     +V   +   Q +L   +   SG++R+A T   G + L   L  F   +P I
Sbjct: 61  GLHLVEYAEKVEAIVHLAQEKLTGHNSALSGQIRLACTEGFGTHFLAAQLAHFCARHPHI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  +  ++ +++    AD AI + +P  S +    KL   H+  YA+P YL       +
Sbjct: 121 TLDFLPLSRFVNLPKREADMAISIERP-DSGNYAIAKLCDYHLKLYASPAYLAERGPITA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  I + D +    E    L  +++ +   R+S  +  + ++       G+G+A
Sbjct: 180 ASDLQNHTFIGYVDDLVFSEE----LRYLEQIVTADRVS-YRSTNVVAQCSAVRQGTGLA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP ++   + +LV ++ED +    + +   PE   N  ++KA R F+
Sbjct: 235 VLPCFLASPHADLVPVLEDQVLFKRSFWLVTPEERHNLARIKALRQFV 282


>gi|170731633|ref|YP_001763580.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169814875|gb|ACA89458.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 325

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L +F     +GS + AA +L L +S++S++++ LE  +G +L +R +R   LT  
Sbjct: 23  MNLNDLYLFVQAVEAGSMSAAARRLGLPKSTVSKRVAELERTLGARLVHRTSRSFRLTPV 82

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++          + ++ +  +   + +P+G +RI +++ + Q++L   L    + +P +
Sbjct: 83  GAEFFEHARAAVIEADSARDAVLRQAAEPAGVVRITSSVPVAQHILAPCLPALAITHPKL 142

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +Q+   ++ +DI+ +  D A+R    P+  S+L+QR L    +   AAP YL     P 
Sbjct: 143 LLQIHASDRLVDIAQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPAYLARAGTPD 202

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H+ +  G       + +      D     PR+  LQ +    ++Q    G G+
Sbjct: 203 TPADLAQHDGLHPGP------QPWRLQRGGDAVDVTPRL-RLQADESTLLLQAATAGLGL 255

Query: 242 ALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LPD+I      +  LVR++      + T     P        ++A   F+
Sbjct: 256 ACLPDWIAGAALASGALVRVLPGWCAGTVTTTLLMPHRRGQLPGVRAAVEFL 307


>gi|187479575|ref|YP_787600.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115424162|emb|CAJ50715.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 296

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 127/295 (43%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + + +F  VA+  +F+HAAE L++  S++SR++S LE  +G+KL  R  R + LT
Sbjct: 1   MDIPLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERNIGMKLLNRSTRRIDLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +  +      +LQ+ +  P G+L+I+    L Q  L   ++ F   YP
Sbjct: 61  EAGMVYFERCRHIVEEARVAHEQLQDMAAHPKGRLKISMPTSLAQLFLPVVIRNFRDQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+    L  + ID   +  D  +R       SSLI +++V +    YA+  YL    EP
Sbjct: 121 DIECDFDLSLRPIDPISNPFDLVLRFGAQ-PDSSLIAKQIVLMAQQLYASRAYLAQYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  +      P        L + D+         L  N+   + +    G G
Sbjct: 180 RVPSDLGHHECLRTTLGEPASYW---MLHSGDKVERVQVNGRLAANNLGMLGRMAAHGMG 236

Query: 241 IALLPDY-----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L  +      V ++  LVR++ +       ++   P       K +AF +FI
Sbjct: 237 ITPLLVFDAMEQAVSESG-LVRVLPEWSLTPVPLFALLPSRR-IPAKTRAFLDFI 289


>gi|313106317|ref|ZP_07792561.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310879063|gb|EFQ37657.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 371

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 138/296 (46%), Gaps = 11/296 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 79  LHAFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 138

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T + Y  L   +  L ES  +PSG+LRI+        ++   L EF+  YP +Q+++ 
Sbjct: 139 EQTEQPYRDLVRAREALGESLAEPSGQLRISALHLAKNLVIAPMLNEFVRRYPKVQLEIR 198

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +LD
Sbjct: 199 YEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEYGTPASVADLD 258

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI--ALL 244
            H  + F    P+      W    D    E  +S         +I++    G+GI  A +
Sbjct: 259 GHAAVRF--RFPRSGRLHKWRLREDGRELEVDLSARFVSTDTETIIEAARAGAGIAQAFI 316

Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 317 RERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 368


>gi|299067204|emb|CBJ38400.1| transcriptional regulator (LysR family) [Ralstonia solanacearum
           CMR15]
          Length = 297

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 135/294 (45%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S +SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+        +   ++  +  +     +P+G+LR+   +    +++   + +F   YP
Sbjct: 61  DEGTAFLTHARGILAAVDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ ID+  +  D AIR+   ++ S+L  R+L T  +   A+P YLK    P
Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRIGA-LRDSTLRARRLGTRRLRVLASPAYLKAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++  L  H L+    + P+ +  +         +       L+ +S  ++ Q  + G+G
Sbjct: 180 RTVDALRHHALLGL--VQPESLNHWPLRGPHGDRLRI--TPTLKASSGETLRQLALQGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L D++   +    +LV+++ +        ++  Y    +   ++  F + +
Sbjct: 236 IVCLADFMTARDRRAGDLVQVLPEATVEIQQPIHAVYYRNTQLASRITCFLDML 289


>gi|167563887|ref|ZP_02356803.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 326

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  ++ +  +P G LR+A +  L    +   +  +   YP +++QL 
Sbjct: 67  DGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRVTPLVDSYRRQYPKVRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L    +D+     D  +     +  + +LI   L+   +   AAP Y++    P    +L
Sbjct: 127 LTEGPLDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAPHRPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I            F         +    +    VNS   +    + G+GI++LP+
Sbjct: 187 VRHACIALPADQHSSTWRFVDPDHFTHVVSLQPV--YTVNSASMVRAATLAGTGISVLPE 244

Query: 247 YIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
             + D   +  LVRI+ D     P   +   YP       + ++F  
Sbjct: 245 SYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVE 291


>gi|327192433|gb|EGE59390.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 300

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 140/294 (47%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   G F+ AA    ++ S++S+ ++ LE  +GI+L  R  R L LT +G   
Sbjct: 11  EMEVFVSVVERGGFSSAATARRMTPSAVSKLVARLEARLGIRLVNRSTRRLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +   +   + +   S  + +G++RI T+   G ++L   +  F+ L+P + + +
Sbjct: 71  YERSIAILADIAEAERQ-ASSGEEAAGRIRINTSGSFGNHVLAPLVPAFMTLHPAVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D+  + AD AIR   P++SSSLI R+L        A+P YL    EP S+ +L
Sbjct: 130 AHTDRVVDLMEERADVAIRAG-PLKSSSLIARQLGATRKLIVASPDYLGRHGEPRSVADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I F     + +E +    +    +  P  S +QV    ++    + G+G+A L  
Sbjct: 189 RRHCRIGFS--YARAIEGWPMRES-GETVTIPIPSGIQVADGEAMRHLALSGAGLARLAA 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V+ +     LV ++E+         Y  Y  +      +++A  +F+    R
Sbjct: 246 FTVRADIEAGRLVPVLEEANPGDIEEFYALYIGQGGPLPARVRALLDFLAAHVR 299


>gi|170698978|ref|ZP_02890036.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136085|gb|EDT04355.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 310

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 123/299 (41%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE++V  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLESKVATRLFERSTRQLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     +GK+R+++T D G+N L   L EF  L+P 
Sbjct: 61  EGRLYLNCCRQALQALDDAHALLQEGRNVVAGKVRLSSTSDFGRNQLLDWLDEFTTLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L   +   ++  D  D AIR   P    +LI R+L        AAP +++    P 
Sbjct: 121 VTFSLTASDSASNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFVERHGVPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L                          +    P  +  + N      ++ + G GI
Sbjct: 180 DPHDLASFPCNVITIASGPMNTWRFTRGDEVQTHTVPVSTAFETNDGGLTREWTLRGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           AL   + + D+     L  ++ D       ++  Y        +++   +F+  + AR+
Sbjct: 240 ALKSLWDIADDVRAGRLRVLLPDWRHQDAPLHAIYHSKRYMAPRVRVLLDFLAERFARE 298


>gi|70733759|ref|YP_257399.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68348058|gb|AAY95664.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 296

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 132/287 (45%), Gaps = 9/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +    SFT AA+ L+L +++++  ++  E  +G +L  R  R +  T  G   +
Sbjct: 7   MKVFVRIYERSSFTLAADDLNLPRATLTHTLNQFEAWLGTRLLERSTRRVRPTLDGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++  +LE  ++  +  +V+P G+LR+     L ++ +   L EF+  YP I++ + 
Sbjct: 67  PRCVQLLAELEEAELAFR--TVEPHGRLRVDMHGTLAKHFVIPRLGEFMQRYPQIELAIS 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D+  +  DC +R    ++ SSLI R++  +     A+P YL    EP S+ EL 
Sbjct: 125 EADHFVDLVAEGVDCVLRAGN-LEGSSLIARRVANLQQVTCASPAYLARYGEPQSLDELG 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +  +       F +   V+  + E  I   L V          + G GI   P 
Sbjct: 184 AHRAVNY--VSRTATRSFPFEFLVEGQVREVAIDGALSVFGAQIYGASALAGLGIIQCPR 241

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           Y V    +  ++  I+     P+  V   YP +   + +++ F +++
Sbjct: 242 YHVARQIEQGSMREILCHTPPPAMPVSVVYPHSRHMSPRVRVFVDWL 288


>gi|330719642|gb|EGG98205.1| Transcriptional regulator [gamma proteobacterium IMCC2047]
          Length = 308

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 121/302 (40%), Gaps = 13/302 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V ++G    A  Q+ LS +S++ +I+ LE     +   R  R ++LT  G 
Sbjct: 4   IENMALFVRVVKTGGLAAAGRQVGLSPASMTGRINALEQHYNARFLNRTTRKISLTSVGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     V  +++ T+  LQ       G LR+  + D G+  +   L +F+  +P +  
Sbjct: 64  RFYEGCLRVLAEIDETEALLQRDQQALCGPLRVTASSDFGRQFVAPALADFVKQHPGVIP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D+     D  IR    +  S+LI R+L        A+P YLK   EP   +
Sbjct: 124 YLFLSDGVVDLVGQGFDLGIRFGN-LPDSNLIMRRLAENPRVLVASPSYLKTHGEPARPK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H  +    L     E +    + +          L  N    I  + + G GI   
Sbjct: 183 DLEQHTCLVMERLGEPLNEWY--FHSAEGSERINVTPALMSNDGAIIRHWALSGVGITYK 240

Query: 245 PDYIVKDN---PNLVRIMEDVIT-------PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             + VK +     L  ++ D +            +   YP       ++  F +F+  + 
Sbjct: 241 SLWDVKHDLAAGKLATLLNDYVLTFQASDGEDAGLKIVYPSRRYVPLQVAGFIDFLKDRL 300

Query: 295 RD 296
            D
Sbjct: 301 SD 302


>gi|296114682|ref|ZP_06833334.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978778|gb|EFG85504.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 307

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 121/293 (41%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +AR  SF+ AA +L +S S++S  +  LE  +G++L  R  + +TLT  G
Sbjct: 12  DIADLTYFMTIARHRSFSRAAIELGVSASALSHALKALEQRIGVRLLNRTTKSVTLTSAG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L     E +  ++T    L      P+G++R+   ++    LL   + EF+  YPD++
Sbjct: 72  ESLITAIGEPFQVIDTAMEALNRFRDAPAGRIRLNVAVEAANLLLAPVIPEFMDRYPDVE 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++  N+ +D++    D  IR    +    + QR    I      +  YL     P   
Sbjct: 132 LDVVASNRMVDVTDAGFDAGIRYGNTVPEDMIAQRLSADIRWIIVGSASYLDRFGTPEQP 191

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I+      +           +  I  P  + + V+   + +   + G+G+  
Sbjct: 192 HDLLEHRCISNRLGDDRIYRWELECEDEEIEIAVP--TSITVDQAETGLNAVLGGAGLMY 249

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP+ +V     +  L++++          Y  Y    +    L+     I  +
Sbjct: 250 LPEPLVVSYLSDGRLIQVLPKWTATGDGFYIYYSSRHQLPTGLRLLIELIRDR 302


>gi|238760469|ref|ZP_04621606.1| Glycine cleavage system transcriptional activator [Yersinia aldovae
           ATCC 35236]
 gi|238701311|gb|EEP93891.1| Glycine cleavage system transcriptional activator [Yersinia aldovae
           ATCC 35236]
          Length = 305

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFTSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSSFNAAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +    S L   +L    +    AP  L          
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWSGLRTERLYAEFLLPVCAPSLLMGEHGLKVPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +W+A   R +G P+I+  Q    +    ++Q  V G GI
Sbjct: 185 DLANHTLLH-------DTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|170696811|ref|ZP_02887916.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138280|gb|EDT06503.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 328

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 129/299 (43%), Gaps = 9/299 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  D    + L  F  V   G F+ A   L +S+S +SR+++ LE  +G++L  R  R L
Sbjct: 1   MKIDSHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEASLGVRLLQRSTRKL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G   ++    +  + +     +Q+    P G +R++  + + Q +L   L EF+ 
Sbjct: 61  ALTEAGQLFYQHCQAMLSEAQAAVNVVQQLRSSPRGTVRVSVPVTVSQTILSTILPEFMH 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            YP++++ + + N+ +D+  D  D A+R+R  P ++++++ R L         AP  L+ 
Sbjct: 121 RYPEVRVVMRVTNRVVDLFEDSIDVALRVRSDPPENANIVVRPLWRTQQMLVGAPSLLQQ 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              PL   +L +    T           ++ +A             L      +I +  +
Sbjct: 181 NAPPLQPNDLARFE--TLDVPTTDGRHVYHLIAPDGSRHVHEHEPRLVTADLSTIREAVL 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G GIA LP+ +         L  +M     P+  +Y  +         ++AF +++  
Sbjct: 239 CGVGIAALPEMMYGAPLRTGQLSPVMPGWTFPAPQLYAVFVSRQGMVPAVRAFVDYLVE 297


>gi|126172855|ref|YP_001049004.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|304410739|ref|ZP_07392357.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307304834|ref|ZP_07584584.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|125996060|gb|ABN60135.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
 gi|304351223|gb|EFM15623.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306912236|gb|EFN42660.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 300

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 15/297 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG + 
Sbjct: 6   AIRSFVEVANCGSFTKAAEHLDLSRLQVSRHIQEVEQWLSLRLLHRTTRSVSLTLQGEEA 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ ++P + IQL
Sbjct: 66  LQFCQRILSEVAAMESRAHSHNSELVGSIRIATPIGLGQHSLFDVVDRFIKIHPKVSIQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +    +  +  D A+R  +     +LI R+L+TI     AAP YL +    +   +L
Sbjct: 126 VMSDSFAQLVDERVDVALRYTEQ-PDENLIARRLMTIDAVICAAPSYLDSNTPLVEPIDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN +             NW    +      +++  L+ N    ++   + G GI  LP
Sbjct: 185 LAHNCLIHS-------AQQNWPFLKELQAEHVKVTGNLKANDMGVLVSAALRGHGIVRLP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +      +  L  ++ D  TP  T++  Y         ++AF +F    A+ W+ 
Sbjct: 238 CDLANQYLASGQLKEVLPDFTTPGQTLWAVYLSRSYQQNLVRAFIDF---TAQQWQL 291


>gi|229590713|ref|YP_002872832.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
 gi|229362579|emb|CAY49487.1| putative LysR-family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
          Length = 293

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 123/290 (42%), Gaps = 10/290 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF      GS + AA  L +S++  +R I  +E    I+L +R  R L+LT  G +L  
Sbjct: 8   KVFLETVARGSISAAATHLGMSRAMATRYIGLMEEWAEIRLLHRTTRKLSLTAAGEQLLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
           +  E+       ++   ++   P G LR+       +  L   L EFL LYP + I L +
Sbjct: 68  LCKELVALSTDVKVLGSQAESAPKGLLRVTAPSIFAEYCLTDLLMEFLQLYPAVAIDLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +   +++ +  D AIR+   +    +I +KL  +     A+P YL+    P  +++L  
Sbjct: 128 ADGMTNLAQEGIDLAIRVTDNL-DPGVIAKKLGEVDSFICASPAYLQRHGVPGDVRDLAV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           HN +T+            W   VD   +  P       N    I++  + G+G+++LP +
Sbjct: 187 HNCLTYAYYGRSL-----WHFIVDGENVSVPVTGSFSTNEASIIVRAALSGTGVSMLPHF 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                     L+R+  +       ++  Y    +    LK   +F+  + 
Sbjct: 242 AAGQAIKEGRLIRLFPEYRIKPIGIHAVYLSRQRMPNALKTLLDFLSTRL 291


>gi|206561031|ref|YP_002231796.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198037073|emb|CAR52994.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 311

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  VA  GSF  AA  L   ++++S  +  LET +G +L +R  R + LT 
Sbjct: 1   MDKLDQVRIFLQVAEMGSFIKAAHALDAPRATVSAAVQQLETALGTRLLHRTTRQVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  + +      +       G+L +     + + ++   L      YP 
Sbjct: 61  DGALLLERGRRLLAEADELDRLFRRRDHDVVGRLNVDVPSRIARRVVAPALPSLFRRYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P 
Sbjct: 121 LQLSLGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFTLINCASPDYLRECGVPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               L   H  I +    P    +  W    D       + S + VN+  + +  C+ G 
Sbjct: 180 HPDALAHGHWAIGYAS--PTTGRELGWEYCADGQRRVLTLPSRVIVNNAETYIASCIAGM 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +P + V+    +  LV +M         V   YP     + +L AF  +
Sbjct: 238 GLIQIPRFDVEHLLASGALVDVMPGHRAEPMDVSAVYPHRRHRSRRLNAFIEW 290


>gi|91778696|ref|YP_553904.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691356|gb|ABE34554.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 301

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+ RVF  VA  GSF  AA  L L ++S+S  +  LE  VG++L +R  R + LT 
Sbjct: 1   MDKLDQYRVFIQVADMGSFIKAAHALELPRASVSAAVQQLEASVGVRLLHRTTRRVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L      +   +E      Q    + SG+L++     + + L+   L   L  +P 
Sbjct: 61  DGAQLRERVRALLTDVEEIDQLFQIRQRQVSGQLKVDMPSRIARRLVVPALPGLLRNHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ +D+  +  DCA+R+   +  S+L+ + L  I M   A+P YL+    P 
Sbjct: 121 LRLALNSTDRAVDLVQEGVDCAVRVG-TLYDSNLVAQSLGNIAMINCASPGYLREYGVPE 179

Query: 182 SIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              + LD H  + +          +++LA   R    P +S + VN+  + +  C  G G
Sbjct: 180 RPDDLLDGHLCVGYASPTTGRELPWDYLA-AGREAQIPVVSRVIVNNAENYISCCCEGIG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +P + V+   +   LV +M +       V   YP   + + +L AF  +
Sbjct: 239 LIQIPRFDVQHLLNAGTLVEVMPEFRAAPMAVSALYPHRRQRSRRLVAFIEW 290


>gi|238794104|ref|ZP_04637721.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238726609|gb|EEQ18146.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 304

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 126/299 (42%), Gaps = 7/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +  L VF      GS + AA +L+++ ++ S  +  LE+++G++L  R  R L LTE+
Sbjct: 2   ISFSDLDVFVRTVDCGSLSEAARRLNITPAAASIAVKRLESQLGVRLLARSTRSLRLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+            L   +  +Q      SG L+++   D G+NLL   L +F   +P I
Sbjct: 62  GASYLDSARIALGALIEGEQAIQRKITGLSGVLQLSAPSDFGRNLLVDWLNDFKRQHPHI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPL 181
           Q+ L+L+++  D+  +  D A+R   P   SSL+    L        A+P YL     P 
Sbjct: 122 QLHLLLNDRHADLFREPVDIALRFGVP-TDSSLVALPVLTQHRRMLCASPAYLARYGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H+ + +        +    L                 +      ++ + G GI
Sbjct: 181 TPAQLAAHHSVLYQRNGHLYNQWR--LMRQGEEQEVTMSGEYVSDDGEIARRWALAGLGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A      V D+     LV+++   +  +  +    P   + + +++  + F+  + RDW
Sbjct: 239 ANKAAIDVVDDIRAGRLVQVLPGWLGEALPLNLLCPHRSQVSERVRGLQTFLQQRCRDW 297


>gi|295699371|ref|YP_003607264.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438584|gb|ADG17753.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 318

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 140/291 (48%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  +  + SFT AAE L++ +++ +  +  LE  +G  L  R  R L++T +G+  
Sbjct: 7   AMRTFIRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTALLVRTTRRLSITPEGAAY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +++   ++  +  ++ S+   +G+LRI     +   ++  +L EF  LYP++ + +
Sbjct: 67  YERCAQILADIDEMEASIRNSTDNLTGRLRIEMPSAVASAIVLPSLDEFHTLYPNLDLAI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+ +D+  +  DC+I+L + +  S+L+ R+L T+     A+P YL     P  + EL
Sbjct: 127 GVSNRTVDMVSEAIDCSIQLGE-LPDSNLVARQLGTLDQVTCASPGYLARHGSPADLDEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLP 245
             H  +    + P    + ++   VD    + +++   QV+   + +   + G G+ + P
Sbjct: 186 RAH--VAVNCVSPHSGRECDFDFEVDGEARKVKLNGFVQVSDEQAYLTCGLQGLGM-IQP 242

Query: 246 DYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             I      D+  L  ++         V   Y +  + + +++AF +++  
Sbjct: 243 ARIAAQPYLDSGLLHEVLPQWKPVPMPVSVAYVKNRRVSPRVRAFVDWLAE 293


>gi|90579567|ref|ZP_01235376.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
 gi|90439141|gb|EAS64323.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
          Length = 273

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 131/268 (48%), Gaps = 8/268 (2%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +++S +S++IS LETE+G++L YR  R LTLTE G  L+     + +  +     ++  S
Sbjct: 1   MTKSVVSKRISKLETELGLQLIYRTTRKLTLTEPGEVLYHRAKSISYVAQAAFDSVKGYS 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
              SGK+R++     G+ +L   + +F   +P + + + L+N  +D+  D  D  IR   
Sbjct: 61  EALSGKIRMSVPTISGELVLAKAVSDFCQKHPGLSVDMSLNNHFVDLVADNYDLVIRTGY 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            ++ SSLI R +        A+P Y+++  +P   ++L+ HN + +    P+    F+W 
Sbjct: 121 -LEDSSLIARHIFNSRWVICASPAYIEHYGKPEKPKDLNCHNCLGYN---PQSTGPFDWQ 176

Query: 209 ATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVIT 264
                 I   ++S     ++ +++ +  + G+GIA LP+ +V D      LV ++     
Sbjct: 177 FIKQNKIYTQKVSGNFSSDNAIALKKNVLAGNGIAYLPNCLVHDELERGELVELLSTHAG 236

Query: 265 PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               +Y  YP   K   +++A    I  
Sbjct: 237 KVVGIYAVYPYTRKPAKRIQALIEHIRE 264


>gi|239997201|ref|ZP_04717725.1| LysR protein [Alteromonas macleodii ATCC 27126]
          Length = 299

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            + +L VF+ +A  GS + AA QL ++  S+S  +  LE  VG+ LF R  R + LT+ G
Sbjct: 5   TFQQLIVFHAIADEGSISGAARQLEMAPPSVSHALKSLEASVGVPLFNRTTRRVELTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L + T      L+    E+   S  P G +RI T     Q LL    +EF   YPD++
Sbjct: 65  KLLKQQTHHAIDTLDIAFEEVNALSYTPRGTVRITTPRFAFQQLLAPYYQEFCERYPDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLS 182
           +++ +++  +++  D  D  IR    I+   ++ ++L        + +PHY K    P S
Sbjct: 125 LEVSINDAAVNLITDGMDVGIRFGDRIE-EGMVAKRLTNATKECLFCSPHYAKKYGLPSS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I  L +H LI +  +    +   + L    + +       + VN    ++     G GI 
Sbjct: 184 IDSLQQHKLIQYRFITSNKLAPLH-LWQNQQAVSVSMPIAMVVNDTDLMIDAAKKGLGIG 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + + +V +      LV ++++   P   ++  + +  +   +++A  +F+  K
Sbjct: 243 RIVEPMVDELFQTGELVPVLKENWFPYSGLFMYFQQHSQKAQRIRALIDFLEEK 296


>gi|92114892|ref|YP_574820.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91797982|gb|ABE60121.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 308

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 129/292 (44%), Gaps = 5/292 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VA++GS T AA +L LS S++S+++  LE  +G+ L  R  R L LT +G +
Sbjct: 5   DDLAFFQRVAQAGSLTGAARELGLSLSAVSKRLQQLEARLGVSLAARTTRRLALTAEGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                + +   L   +  L++     SG+LRI  T   G+  +   +  F  L+P +++ 
Sbjct: 65  YLTRGAMILGDLSDLESSLRDQDALLSGRLRINATFGFGRRHVAPLISRFAALHPQLELL 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +  + +     D  IR+ +P   S  I R+L++      AAP YL N  +  ++++
Sbjct: 125 LELTSFPLGLDEQGFDINIRVGEP-PDSRWIARRLLSNRRILCAAPAYLANAPKLETLED 183

Query: 186 LDKHNL-ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H   I   +     +  F                 L  N   ++ +  + G GI L 
Sbjct: 184 LAHHRCLIVRENDTDYSLWRFEATEGTRSQRAIRVNGRLASNDAEAMTRMALDGHGILLR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + V +   + +LV ++          Y  Y E ++   +++ F +F+  +
Sbjct: 244 SWWDVHEYLASGDLVPLLPQWQGVRADFYLLYSERMRENARVRKFVDFMITE 295


>gi|330960879|gb|EGH61139.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 301

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 133/301 (44%), Gaps = 12/301 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M++ + D L VF  VAR  SF  AA +L +S + +S+++  LE  +G+ L +R  R +++
Sbjct: 1   MNYPNLDDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNLGVVLLHRSTRQVSI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +++     +   ++    E+     +PSG LR+ ++   G+  +   L E    Y
Sbjct: 61  TEDGERIYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I+L + ++ +D+  +  D  IR+   I +  L  R L        A+P YL+    
Sbjct: 121 PKLDIRLDIQDRLVDLIEEGVDLDIRVGNQI-APHLRARHLARNWRVLCASPAYLQRQGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P++  EL  H+ +   +           L              L  N      Q+C+ G 
Sbjct: 180 PVNPGELANHDCLVIKERDRPFGIWH--LHGPQGAETVKVTGSLSTNHGEIARQWCLDGR 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L   + V+       L++++      +  ++  +   L ++ K++    F+    RD
Sbjct: 238 GLLLRSLWDVRTDLAEGRLIQVLPKYWQDA-DIWAVHTSPLMSSAKMRVTVEFL----RD 292

Query: 297 W 297
           +
Sbjct: 293 Y 293


>gi|325527537|gb|EGD04859.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 297

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR  SFT AA +L +SQS++S  I  LET +G++L  R  R ++ TE G
Sbjct: 5   NFADLLAFIAVARERSFTRAAARLGVSQSALSYTIRALETRLGVRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +  + ++E     + E   KP+G +RI  T  + + LL   L   L  YPD++
Sbjct: 65  ERLLRNLAPRFDEIEAELSAVAELRDKPAGTVRINATDYVIRTLLWPKLSPMLRDYPDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D    DI  +  D  +RL   +    +  R    + M    AP Y      P+  
Sbjct: 125 VEFVTDYGLSDIVAERFDIGVRLGDQVAKDMIAVRISPDLKMAIVGAPAYFAQRARPVVP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H+ I     +P     + W    D    + R+   +  N    ++   + G G+A
Sbjct: 185 RDLVAHDCINL--RLPTHGALYAWELAKDGETLQVRVDGQVTFNGTYEMLDAALDGYGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +P  +   +     L  ++ D        +  YP   +++  L    + +  +A
Sbjct: 243 YVPADLAAPHVAAGRLDSVLADWCPTFPGHHLYYPSRRQSSRALALIVDALRERA 297


>gi|300310802|ref|YP_003774894.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300073587|gb|ADJ62986.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 304

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+F VVAR  SF  +A ++  S + IS++I+ LE  +G++LF+R  R + +TE+G 
Sbjct: 7   LEDLRLFCVVARHSSFAGSAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEEGG 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +H     +   +E     +  +   P G L+I+T+  LG+ ++   L  F   +P+++I
Sbjct: 67  NVHEWARRILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L ++ ID+  +  D  IR+        L  ++++       A+P YLK    P  + 
Sbjct: 127 QLELVDRQIDLVNEGIDLDIRVGAG-HEPHLFSKRILPSQRVLCASPAYLKKHGLPADLA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
            L +H  +   +   +      W     + +   ++S  L  N    I Q+ V G GI L
Sbjct: 186 ALRQHQCLVIRE---RNQSFGIWRMMGPKGVETVKVSGMLASNHGEIIHQWAVDGHGIIL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D+     LVR++      +  +   YP  LKN+ K++    F+
Sbjct: 243 RSAWDVADSLKRGRLVRVLPQYYQEA-DLCAVYPLQLKNSAKVRECVRFL 291


>gi|254522982|ref|ZP_05135037.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219720573|gb|EED39098.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 297

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 130/295 (44%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +R F  +    SFT A+E L L +++++  I  LE  +G++L  R  R +  T 
Sbjct: 1   MDRFTAMRAFVRIVERRSFTRASEDLGLPRATVTDAIKALEQRLGVRLLNRTTRLVAPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +     +   ++  +   ++  V P G LRI     LG++LL  +L +FL  YPD
Sbjct: 61  EGEAFYGRCLRLIADMDDAEAAFRD--VPPRGPLRIEVHGTLGRHLLFPHLPDFLQRYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  D AIR+   +  S L  R+L  +     A+P Y++    P 
Sbjct: 119 IELDVSEGDRYVDLLREGVDAAIRVG-TLADSDLAARRLTLLREVTVASPDYVRAKGMPE 177

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            I+ L D H+++ +       +          +    P  + + V+   + +   + G G
Sbjct: 178 GIECLKDGHDMVGYRSSATGQLIPLE-FQQDGQVRYVPLPARVLVSGADAFLGAALAGLG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I   P Y +        LV ++  +      +   YP     + +L+ F +++  
Sbjct: 237 IIQAPRYRMDPYISRGELVELLPQMPPTPSPLNLVYPRNRTPSPRLRVFIDWVAA 291


>gi|167617028|ref|ZP_02385659.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257140934|ref|ZP_05589196.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 293

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 115/289 (39%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSF  AAE   +S + ++++I  +E  +G +L +R  R   L++ G    
Sbjct: 1   MEMFVRVVECGSFAAAAEASQVSATMVAKRIQAIEARLGARLLHRTTRRQQLSDVGQLYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++E  +    E    PSG LRI   +  G   L   L E++ L+P +++ L 
Sbjct: 61  ERCRRALAEVELAESSAAELHATPSGVLRIVAPVGFGSYSLVPALAEYMALHPQVRVDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN          +  + + + I +  L+ R L        AAP YL     P   ++L 
Sbjct: 121 LDNDPPRFWQGDFELGVHIGE-IDAPGLVARPLKPYRRQLAAAPAYLARHGTPKRPEQLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +       +  + +  +                 N   ++    + G GI L P  
Sbjct: 180 EHVCLGLS--YWRRRDRWRLVGPRGEVRDVAVRGGFTANHGDALRVAALQGLGIVLQPQA 237

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++  +     LV ++         +Y  Y +  + T KL++  +F+  +
Sbjct: 238 VLTGDLAAGRLVPVLPAWSLAPSPMYLVYAQDRRPTAKLRSAIDFLLAQ 286


>gi|149910110|ref|ZP_01898757.1| transcriptional regulator, LysR family protein [Moritella sp. PE36]
 gi|149806835|gb|EDM66797.1| transcriptional regulator, LysR family protein [Moritella sp. PE36]
          Length = 304

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 122/286 (42%), Gaps = 7/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F+ + ++GSFT AA  L +S S +S+Q+  LE ++ +KL  R  R  TLT+ G +  
Sbjct: 1   MALFHTLVQTGSFTSAAHTLSVSVSHVSKQLKCLEADLNVKLVQRSTRSFTLTDAGQQFA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +EV   ++   + +     + +G LR+  +   G   +   +++F  L+PD+ +++ 
Sbjct: 61  GYCAEVVSSVQNADVMMTNLQDEVTGILRLGVSQSFGTIHIIPAIEQFRKLHPDLHVEVS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +   ++  D  D  +   + I     + + L        A+P YL N   PL   +L+
Sbjct: 121 LFDYKTNMIEDGFDLWLTNIEDIP-EGYVAQHLADTCFVLAASPDYLMNHTTPLHPNDLE 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +                 D  +        +V+   +I    + G GIA L  Y
Sbjct: 180 HHNCLIYQSRERNYGLWS--FKQGDDALYINVNGNYRVDLAEAIRDAAISGWGIAYLATY 237

Query: 248 IVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNF 289
           ++ D      L++++ +     S   Y  YP       K  A   F
Sbjct: 238 LLTDEFRTGKLIQLLPEWQASQSMQFYAVYPSRKHLPKKSSAAITF 283


>gi|54309806|ref|YP_130826.1| putative transcriptional regulator [Photobacterium profundum SS9]
 gi|46914244|emb|CAG21024.1| putative transcriptional regulator [Photobacterium profundum SS9]
          Length = 292

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 82/290 (28%), Positives = 139/290 (47%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T A+ +  +  ++++R+I  LE  + ++L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRMVVENGSYTGASRKTQVPVATLTRRIQALEECLNLRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K +   + +  +L  T   + E     +GKL+IA   +L + LLQ  L  F+L +P I
Sbjct: 61  GQKFYDDCAPLLQQLVDTTEHISEECKGAAGKLKIAAPSNLTKVLLQPMLNAFMLKHPAI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L + ++   +     D   R+  P + S+LI R++  +     A+P YLKN  EP  
Sbjct: 121 SIELHMSSEPEQLDPTDWDIMFRVG-PQRDSTLIARRISAVKDILVASPIYLKNNPEPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H L+    L+   + D N        +        + N    + + C  G GI 
Sbjct: 180 AQDLHDHTLLKGNPLLRWRISDHN-----GDTVAINERGLFEANQLDVVRKACCAGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L+P+ +++   ++  LVRI+ +       VY  Y        KL+ F  F
Sbjct: 235 LMPNVMLEQYIESGELVRILNNWSANPREVYLLYNHRDYQPEKLRLFIEF 284


>gi|242241334|ref|YP_002989515.1| LysR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242133391|gb|ACS87693.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 295

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 135/293 (46%), Gaps = 11/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F  V   GSF+ AA ++ + Q ++S+ +  LE ++   L  R  RGLT TE
Sbjct: 1   MDRLGALETFVCVYECGSFSAAARRMGIGQPAVSKAVMQLEQQLATSLLLRSTRGLTPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L+   +    ++   Q  +   +   SG+LR++  +   +  +   L +F+ L+P+
Sbjct: 61  AGQQLYDRIAPALTEIRDAQDSIVGGNQ-LSGRLRVSAPVTFARLHIFPRLHQFMALHPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ ++LD++ +D+  +  D A+RL   +  S L  R++    M   A P +      P 
Sbjct: 120 LKVDMLLDDRPVDLIAEGIDVALRLGD-LHDSGLTARRIAESPMKLLATPGWFAAHGVPT 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           +  E+++ + I +     +     NWL +         +S  ++ ++   + +  + G+G
Sbjct: 179 APPEIEQQDAIVY----LQSSTPENWLFSRGAQQCRVTLSGRIRTSAAEGMREAVLAGNG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+   ++      +  +V  ++D    +  ++  YP     + +  AF  F+
Sbjct: 235 LAIASAWMFAPELADGRVVTALDDWQIGTMALWAVYPGGRLTSARAWAFTEFV 287


>gi|325517999|gb|EGC97815.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 305

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 130/287 (45%), Gaps = 5/287 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F     +GSF  AA +L  ++S++ + I  LE  +G +LF R  R L LT+ G   +
Sbjct: 12  ISAFVAAVDAGSFAQAAARLGQTRSAVGKAIGRLEARLGTRLFVRTTRRLALTDDGQAFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++   +L+  Q  L+    + +G+LR++  +  G++ L   L +    +P +Q++  
Sbjct: 72  ERCAQALEELDAAQHMLEAGRREAAGRLRVSAPVVFGRHHLTPLLLDLADRHPRLQVEGH 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D + +  D AIR      S +L+ R L    M   A+P YL+    P S  EL 
Sbjct: 132 FTDRVVDFADEGVDLAIRSGALPDSDTLVARPLGMQAMVVCASPAYLRAHAAPRSTAELG 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I +  L       +       R +       L  +   S++   + G+G+  +P++
Sbjct: 192 AHRCIVY--LHGGRANPWTLTEPDGRVVQPALPYRLGFDDIDSLVAAAMRGAGLVHVPEW 249

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V+D      LVR+M+ + +    ++  +P       KL+   + + 
Sbjct: 250 LVRDALRTGALVRVMDHMASAGTPMHVVWPATRFLPYKLRVAIDAVL 296


>gi|171321296|ref|ZP_02910258.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171093423|gb|EDT38606.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 310

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 119/295 (40%), Gaps = 5/295 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS T A  +L+L+ ++ S +++ LE ++  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLTAAGRKLNLTPAAASARLAKLEAKIATRLFERSTRQLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     +GK+R+++T D G+N L   L  F  L+P 
Sbjct: 61  EGRLYLNCCRQALQALDDAHALLQEGRNVVAGKVRLSSTSDFGRNQLLDWLDAFTTLHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L   +   ++  D  D AIR   P    +LI R+L        AAP +++    P 
Sbjct: 121 VTFSLTASDSASNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCAAPSFVERHGVPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPHDLARFPCNVITIASGPMNTWRFTRGDEVQTHTVPVSTAFETNDGGLTREWTLRGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           AL   + + D+     L  ++ D       ++  Y        +++   +F+  +
Sbjct: 240 ALKSLWDIADDVRAGRLRVLLPDWRHQDAPLHAIYHSKRYMAPRVRVLLDFLAER 294


>gi|167614745|ref|ZP_02383380.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 307

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 126/293 (43%), Gaps = 11/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA +  F+HAA QL+LS S ++R +  LE+ +G+KL  R  R   LTE G +  
Sbjct: 1   MRVFLKVAETHHFSHAANQLNLSPSLVTRYVGDLESHLGVKLLQRSTRKTVLTEVGVRYA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L   +      S   +G L +     +    L G   E+   +PD+ +++ 
Sbjct: 61  EGCRALLANLHEIESRATHESSAIAGDLHVVALDSITSPELAGLFAEYQSRHPDVSLRIT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             + ++D+     D  I     I S SL+ R L+   + A A+P YL     P    +L 
Sbjct: 121 QTDSEVDLLGGGFDVGIVADTMITSVSLVSRTLIHAPLVAVASPGYLLQAPPPARPADLA 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H +I            + W    +        + + VN+     Q  + G GI LLP+Y
Sbjct: 181 RHRIIGLA----AGARTYRWTGKNNAVDTTQIDTPITVNNAPMQRQLVLAGGGIGLLPEY 236

Query: 248 IVKDN---PNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +V ++     L R++ D        T+   YP      GK++AF +     AR
Sbjct: 237 LVANDLRIGTLTRLLGDYRIANDGVTISLVYPGREFLPGKVRAFVD--LAAAR 287


>gi|170724965|ref|YP_001758991.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810312|gb|ACA84896.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 305

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 124/295 (42%), Gaps = 11/295 (3%)

Query: 1   MSFDWD--KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+ D +   +R F V+A  GSFT AAE L  S+S +S+Q+  LE  +G+ L  R  R   
Sbjct: 1   MNKDLNLADIRAFTVIAEQGSFTQAAEVLGCSRSHLSKQLLQLENLLGVSLITRTTRAQR 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLG-QNLLQGNLKEFLL 117
           LTEQG             ++       +++ +  G + I     +  + ++   + +F+ 
Sbjct: 61  LTEQGRFFFDSCQAALESIDQAVAVTVDNAQRLQGHININCVGGIIGEEIVTALVNDFIS 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPDI + L   +  +D+ +D  D   R+ + ++ S+++ RKL++I     A+P YL   
Sbjct: 121 QYPDISVHLDFSSPRVDLVVDEFDLVFRMGE-LEDSAIVARKLMSIENMTMASPQYLAAH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P   ++L +H  IT           F         +        +  +   +    + 
Sbjct: 180 GYPNHPKDLKEHLCIT----GSIDHWLFEKRDDAKSKVEVAIKGGFKCKNGRVMKSAALA 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +GI  LP     +      LV + ED        Y  Y +      +L+AF +F
Sbjct: 236 DNGIVRLPRLYCPNELAKGELVSVFEDWRVADTPFYLLYCKDRFQPARLRAFISF 290


>gi|71278424|ref|YP_270599.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144164|gb|AAZ24637.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 299

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 137/297 (46%), Gaps = 14/297 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++V+  VA    F+ A+ +L++S  +++R ++ LE  + +KL  R  R + +TE
Sbjct: 1   MDTFHLMKVYIAVAEEQGFSAASRRLNMSAPTVTRAVAHLEETLKVKLLNRTTRYVRMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       + H ++         +  P GK+ +   +  GQ  +   + ++L+ YP 
Sbjct: 61  AGARYLEDAKRILHDVKVANEAALGINATPQGKISVTAPVLFGQQFVLPTITDYLVRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            Q+  +  ++ +++  +  D  IR+ + +  SS+  +K+  + +   A+P YL     P 
Sbjct: 121 TQVNAVFLDRVVNLLEEGHDVGIRIGE-LHDSSMRAKKVGNVRLILVASPEYLAKNGIPK 179

Query: 182 SIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           + QEL +H LI    G L P      +W   V++     +I   L V +  + +     G
Sbjct: 180 NCQELAQHTLIAANTGSLNP------DWQFLVNKKNQTIKINPRLTVTTNQAAINAAKNG 233

Query: 239 SGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI  +  Y V +      L  ++E+   P+  +   + E   ++ K+++F + +  
Sbjct: 234 LGITRIISYQVAEELKNNKLKILLENFEYPAKPINIVHREDKFSSAKVRSFIDLLAE 290


>gi|77459375|ref|YP_348882.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383378|gb|ABA74891.1| LysR family transcription regulatory protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 305

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 133/296 (44%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L++F V A+ GSF+ AAEQL  + S++++ ++ LE+E+G +LF R  R + LTE
Sbjct: 1   MDKLGALKMFVVTAQLGSFSRAAEQLGKTPSALTKAVNHLESELGARLFERSTRRILLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        +V  +L+    E+++      G L+I   +  G+  L      FL  YP 
Sbjct: 61  IGRLYLETARQVLQRLDEASEEIEQLQHGLRGSLKITAPLAYGRAFLDQVCDGFLQQYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +Q+ L ++ +++     D A+R         LI R + +  +    +P YL     P+
Sbjct: 121 ISLQVDLCDEFVNLLESGYDLALREGHD-DLPGLIARVVGSNRLALCGSPEYLARKGLPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q LD+H  + +   +      +         + +P    L+ ++Y  ++   + G G+
Sbjct: 180 TPQTLDQHEWLLYRHPLLSREFWWAERDGQRLSLAQPTAPLLRSDNYDLLLASALAGRGL 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVY----FCYPEALKNTGKLKAFRNFI 290
              P +       +  LVR+M D      +        YP   + T K+ AF ++I
Sbjct: 240 LHTPLWSAAPYIADGRLVRVMADYEIDPDSFGPHILAVYPSHRRATAKVVAFIDYI 295


>gi|254230037|ref|ZP_04923436.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262392457|ref|YP_003284311.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151937425|gb|EDN56284.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262336051|gb|ACY49846.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 315

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 133/301 (44%), Gaps = 7/301 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D+  L +F    R  S T  A +L+L +S++S+ I+ LE     KL  R  R L +TE
Sbjct: 8   TIDFRTLSIFVTSCRLLSLTKCALELNLPKSTVSKAITKLEQHFEAKLLERTTRKLVITE 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +    + +  +  +   ++QE   +  G+LRIA    L   + +     FL  +P 
Sbjct: 68  AGQMVLERAASLVEEFHSIGQDVQEMEQQIQGRLRIAAPPALDAYMAEHIFLPFLKQWPK 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI L   N  +D+     D AIR+ + I    LI +KL        A+P YL  C  P 
Sbjct: 128 VQIALEASNDFVDLFSHGFDMAIRVGQ-IVDDRLIAKKLGYTTRVLAASPEYLAECGVPK 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  HN + +  +          L + D  +     S     +  ++++  + G GI
Sbjct: 187 TPEDLTTHNCLRYQYVSEIGPWT---LISQDNTVNVSVSSNFSSTTVEAVLKGALKGLGI 243

Query: 242 ALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A LP   + +  +N +LVR++    T    +Y  Y      T +++A  + I      ++
Sbjct: 244 ANLPMQNMTQELENGSLVRVLPQWHTVPMPIYLVYRPGANRTRRVQAMIDHIMSLRSQFE 303

Query: 299 F 299
           F
Sbjct: 304 F 304


>gi|156934432|ref|YP_001438347.1| hypothetical protein ESA_02263 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532686|gb|ABU77512.1| hypothetical protein ESA_02263 [Cronobacter sakazakii ATCC BAA-894]
          Length = 333

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 128/290 (44%), Gaps = 6/290 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  +  SGS + AA+Q++ +Q+++SR++  LE  +G +L  R    + LT+ G +
Sbjct: 25  ELMHTFVRIIESGSLSAAAQQMNTTQATVSRRLKSLEDLLGARLLLRTTHAMKLTDDGER 84

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    V    +  + E++ +  +P G LR+      GQ+ L   L  FL  YP + + 
Sbjct: 85  CYQHARSVLASWQALEDEIKNAEGEPVGVLRVRAPHAFGQDQLIAPLTAFLNRYPGLCVD 144

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L++K  D   D  DCA+ +   I   S+I  +L  +     A+P  L        I  
Sbjct: 145 WMLNDKSPDFISDNIDCALHVGPDI-DPSVIAVELAEVPRIVVASPELLARHPPVEDIDS 203

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L     +       + +   +  +   +      +  L  +S  +I +  + G G+ ++ 
Sbjct: 204 LAALPWVALSTFYRREVTLHHIGSGERQAFTV--LPRLSSDSLYAIRRTILNGLGVGMIS 261

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + V+++     LV+++     P+  VY  YP A     +L+ F   +  
Sbjct: 262 AWAVEEDLREGRLVQLLPQWQAPALPVYLLYPWARYYPARLRRFLELMKA 311


>gi|167719855|ref|ZP_02403091.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 276

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 122/278 (43%), Gaps = 9/278 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +  +GS + AA +L LS S +S++++ LET +G++L  R  R  TLT++G
Sbjct: 5   DLPALATFARIVAAGSLSGAARELDLSLSVVSKRLAQLETRLGVRLLQRTTRQQTLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H     +  ++E  +  ++E     SG LRI    +LG+  +   +  F   +P + 
Sbjct: 65  ALFHAQVVRILAEIEQAESLMRERRGTVSGALRITAPGELGRRRIAPIVAAFQRQHPQVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+ L +  +D+     D A+R+   +  SSLI R+L   +    A+P YL     P   
Sbjct: 125 VQMQLTDAVVDLIAHDVDVAVRIGM-LADSSLIARELAPNYRVLCASPAYLAEHGMPAQP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I  G+          W      P      +    N   +     + G+GIAL
Sbjct: 184 ADLCAHRCIVLGEQPR-----VEWRFDGPHPAAVEVSAAFLTNDGGAARTLALEGAGIAL 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALK 278
              + V  +     L R++ +  + +  ++  YP    
Sbjct: 239 KSIWDVGPDLAAGRLRRVLPECASSAAPLHAVYPSGRH 276


>gi|157376347|ref|YP_001474947.1| putative transcriptional regulator protein [Shewanella sediminis
           HAW-EB3]
 gi|157318721|gb|ABV37819.1| putative transcriptional regulator protein [Shewanella sediminis
           HAW-EB3]
          Length = 296

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 134/296 (45%), Gaps = 11/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L++F +V + GSFT AA  L L ++++SR+I  LE  +  +LF+R  R L LT+ 
Sbjct: 1   MRIEDLKLFTIVVKLGSFTAAATALDLPRANVSRRIGELEKSLNAQLFFRTTRQLRLTQH 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     V    E  + +L +   KP GK+++    +  +  LQ  L  F   YPDI
Sbjct: 61  GEAYYHELLTVLEGFEQAKNKLHDIDDKPVGKVKVGFLPESDEA-LQPILARFQEQYPDI 119

Query: 123 QIQLILDNKDI-DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ L   N  + DI     D AI   + +  S  I R+L+++    YA+P Y++    P 
Sbjct: 120 ELDLRFTNNYVTDIYSQGLDFAIHGGRIL-DSGFIARRLLSLGRCMYASPEYIEKNGMPK 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL +H  I +        + ++ L    +  G         N    + +  + G GI
Sbjct: 179 TLDELREHQCICYRWPDGTLDDCWDLLTETIKVSG-----RFSSNHMGFVRRAIIGGQGI 233

Query: 242 ALLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP    +   ++  LVRI+    + +  V+  YP+    +   +   +F+  + 
Sbjct: 234 GFLPPLFAFNAIESEGLVRILPQYQSKTEDVWLIYPDRRGISLPTRLLIDFLVKEV 289


>gi|16119619|ref|NP_396325.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15162187|gb|AAK90766.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 301

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D +  F  VA  GS + AA  L LS+S +S +++ LE  +G  L +R  R +++TE 
Sbjct: 1   MKLDGIASFVAVAEEGSISGAARTLRLSKSVVSERLAELERSLGATLLHRTTRRVSVTED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++     +L E      G +RIA  +  G+  L   L  FL   PDI
Sbjct: 61  GVAFLERAKRILREVSEAAADLAERRGTLGGPIRIAAPVTFGRMHLGPALYPFLTANPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L LD++ +DI+ D  D  +R    +  S L+  +L        A+  YL     P +
Sbjct: 121 EMSLELDDRRVDIASDVYDGVVRHGA-VDDSRLMVWRLAPSRRVLVASEAYLAVNGTPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H  + + +   + + D+ +LA     I   RI   +VN+   +    + G GIA
Sbjct: 180 TTELAAHKGLFYTN---RGVGDWRFLAPGGIEIVRARIG-FRVNNGDMLRDAAIAGLGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLP +I      +  L  +   V   +  V+  +PE  + + KL+A    +  
Sbjct: 236 LLPLFIAGPDIRDGKLRIVDVGVRPDAEFVFLAHPEGRRPSAKLRALAAHLKA 288


>gi|312882547|ref|ZP_07742288.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369947|gb|EFP97458.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 309

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 12/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  + +  SF+ AA  L +S S IS+ ++GLE  +G+KL  R  R  T T+ G + +
Sbjct: 9   MVIFAALVKHQSFSRAAASLGVSVSHISKTLAGLEQSLGVKLIERSTRNFTPTQAGLQFY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +E+   +E    E++    + SG  R+A   + G  LL   L +    YP ++++++
Sbjct: 69  ESCTELVKAVEKGYTEIESMRDEVSGVFRLACMPNAGTALLIPALNDLKKQYPALEVEIV 128

Query: 128 LD-NKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +  +D+  +  D  I   +        + ++L    +   A+P YL   + P    +
Sbjct: 129 LTLDHSLDLLEEGIDLWITAGRSTSIDQGYVAQRLADNKLIVVASPDYLIRNKVPSHPND 188

Query: 186 LDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           L   N + +     K  E F+ W  +         +     +NS  ++      G GI+L
Sbjct: 189 LKDLNCLIYE----KGNEIFDTWPFSKGGQSVNVNVKGNFMINSANALCDAAESGWGISL 244

Query: 244 LPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +P +++ D   +  L++++ D  +      Y  YP       K K    FI  
Sbjct: 245 VPTFLIDDQFKDRKLIQVLSDWHVALDLPFYGIYPSRRYLPNKTKVVVEFIKE 297


>gi|283788349|ref|YP_003368214.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282951803|emb|CBG91513.1| putative LysR-family transcriptional regulator [Citrobacter
           rodentium ICC168]
          Length = 308

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 139/303 (45%), Gaps = 16/303 (5%)

Query: 1   MS--FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           MS       L  F  +   G  + AA QL++S S++S+ ++ +E  +G  L  R  R +T
Sbjct: 1   MSAPVSLKHLEFFVRIVDCGGLSEAASQLNVSPSAVSKSLAAMEESLGTTLIKRTTRSIT 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT+ G  L    +++ H+ +            P G+LRI  +I  G + L   + ++   
Sbjct: 61  LTDAGQYLFNRANKLLHEFDEALNTTSGYYHNPQGELRITCSIAFGYSRLVNLVDKYRSQ 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +PD+ + + L++  ++++    D A+R+       +   RKLV I     A+P YL    
Sbjct: 121 FPDVNLYIDLNDNFVNLNDTDFDIALRISTA-PPQNYAMRKLVPIRWAYCASPGYLAKKG 179

Query: 179 EPLSIQELDKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            PL   +L  H+ + +  L P  K  ++ + L  +  P      + +Q NS L +++  +
Sbjct: 180 MPLRRADLVNHDCLIYPGLTPVIKVADEQDRLHQLKLP------APIQANSSLVLLKSVL 233

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVI-----TPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              G+A LP Y++ D+     I   ++       +  +Y  Y  +  +  K+++F +F+ 
Sbjct: 234 EDQGVAYLPTYLIGDHIQKQEITPLMLDGMMSCETHALYALYFPSKYSNPKVRSFIDFLV 293

Query: 292 LKA 294
            + 
Sbjct: 294 AEL 296


>gi|75674813|ref|YP_317234.1| LysR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74419683|gb|ABA03882.1| transcriptional regulator, LysR family [Nitrobacter winogradskyi
           Nb-255]
          Length = 312

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 122/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  AA  L + +S +SR+++ LE  +G++L  R  R  T+T  G
Sbjct: 3   DLNDLYFFVQVVDHGGFAAAARALGIPKSRLSRRMATLEARLGVRLIQRSTRRFTVTGIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R    +  + E  Q  ++ S  KP G +RI+    L    +   +  F+   PD++
Sbjct: 63  QDYYRHCVAMLVEAEAAQDLIERSRTKPQGIVRISCPPPLLYFQVGEMIARFMAECPDVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L    + +D+  D  D A+R+R  P++ + L+ R L        A+P  LK    P  
Sbjct: 123 VHLESTPRRVDVIADGIDIALRVRFPPLEDNDLVMRVLAESAQRLVASPSLLKKLSHPPV 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     I +    P    +++           P          +++    + G G+ 
Sbjct: 183 PADLAHLPSIGWQS--PHHPHEWSLDGPDAGTARIPHTPRFITEDMVALRFAALRGIGVG 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             P  +VK   ++  LV ++ D    +  V+  +         ++A  +F+  +
Sbjct: 241 QFPTMMVKADLESGALVDVLPDWTPRAGIVHAVFSSRRGLLPSVRALLDFLAAE 294


>gi|78049440|ref|YP_365615.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037870|emb|CAJ25615.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 308

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 125/293 (42%), Gaps = 8/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +   V   GSF+ A   L   +S +SR+++ LE  +G++L  R  R ++LTE G
Sbjct: 3   DLNDFALLVAVVDHGSFSAAGRALGFPRSKVSRRVADLEQRLGVRLLQRSTRAVSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ +     +    +      + ++  PSG++R++    +    L   L  FLL +PD+Q
Sbjct: 63  AEFYTHCKSITRSAQWALDVAERATQHPSGRIRVSCPTGVAHLFLAKLLPRFLLAHPDVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +++  +  D AIR+R  +  S LI R          A+P ++       S 
Sbjct: 123 VDLELTSRRVELIAEGIDVAIRVRSSLDDSGLILRSFGVSRQALVASPGFVHAHGPFASA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLGSGI 241
             L  H ++  G       E   W  T  +   E     S L       + Q  + G G+
Sbjct: 183 AAL--HEVLGMGPR-GVNGEPPRWRLTSPQGTSELVDYRSRLFTEDVELLHQAALAGMGV 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A LP  + + +     LV ++ D   P   ++  YP        ++A   F+ 
Sbjct: 240 AQLPLALCRGSIARGELVVLLGDHTLPVHQLHAVYPSRRGLAPGVRALIEFLV 292


>gi|317049976|ref|YP_004117624.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951593|gb|ADU71068.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 310

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F  +  SGS + AA QL  +Q +ISR++  LE  +G+KL  R    L LT+ G 
Sbjct: 10  IELMQTFIRIVESGSLSAAAAQLGTTQPTISRRLQALEQRLGLKLILRTTHALKLTDDGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   ++       + EL  +S  P G LR+      GQ+ L   L ++L  YP + +
Sbjct: 70  RCYQQARQLLATWYALEDELTGASDDPVGTLRVRAPHAFGQDQLVAPLVDYLQRYPRLNV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L+++  D   +  DCAI++  P    S++   L  +     AAP  L      ++++
Sbjct: 130 EWMLNDRTPDFVAENVDCAIQVGAP-TDPSVVAILLAEVPRFVVAAPSLLAAHPPVMAVE 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +          E      +   P+       L  +S  ++ +  + G G A++
Sbjct: 189 QLPNLPWLALTSFY--HGEIALQRLSDGHPVNLAISPRLASDSLYAVRKAALAGMGAAVV 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             ++V+++    +L++++ +   P   V+  YP A     +L+ F   I  
Sbjct: 247 SSWVVQEDLARGDLIQLVPEWQAPPLPVWLTYPWASYYPARLQKFFAMIRE 297


>gi|254559415|ref|YP_003066510.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254266693|emb|CAX22474.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
          Length = 298

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 135/295 (45%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + VF  VA +GSF  AA+   +S + + + I  LE  +G++L  R  R  +LT+
Sbjct: 1   MDRFASMEVFATVADTGSFAAAADAAGISAAMVGKHIRQLEEHLGVRLLNRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G      T  V  +LE  +    +S  +P G+LRI      G + L   L  ++   P+
Sbjct: 61  AGRDFLERTRIVLAELEAAEALAADSRARPRGELRINAPFSFGVHSLSPLLPIYMAENPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ +D+  +  DC  R    +  S+LI R L  + + A A+P YL +  +P 
Sbjct: 121 VSVRLTLSDRVVDLVDEGYDCVFRAG-VLHDSALIARGLRPLRLIACASPTYLAHHTQPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  + F       +E+             P +S    NS  ++ Q  + G GI
Sbjct: 180 CPDDLARHTCLGFA---GSALEERWTFYGDGGETIVPIVSRFSTNSGEALRQAALAGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L  + ++ D+     LV I+ +  +    ++  Y    + T KL++F +F   +
Sbjct: 237 VLHAEELLADDVATGRLVHILPEWRS-ERPLHVLYSPDRRITPKLRSFLDFAAAR 290


>gi|167576563|ref|ZP_02369437.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 307

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 126/293 (43%), Gaps = 11/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA +  F+HAA QL+LS S ++R +  LE+ +G+KL  R  R   LTE G +  
Sbjct: 1   MRVFLKVAETHHFSHAANQLNLSPSLVTRYVGDLESHLGVKLLQRSTRKTVLTEVGVRYA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L   +      S   +G L +     +    L G   E+   +PD+ +++ 
Sbjct: 61  EGCRALLANLHEIESRATHESSAIAGDLHVVALDSITSPELAGLFAEYQSRHPDVSLRIT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             + ++D+     D  I     I S SL+ R L+   + A A+P YL     P    +L 
Sbjct: 121 QTDSEVDLLGGGFDVGIVADTMITSVSLVSRTLIHAPLVAVASPGYLLQAPPPTRPADLA 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H +I            + W    +        + + VN+     Q  + G GI LLP+Y
Sbjct: 181 RHRIIGLA----AGARTYRWTGKNNAVDTTQIDTPITVNNAPMQRQLVLAGGGIGLLPEY 236

Query: 248 IVKDN---PNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +V ++     L R++ D        T+   YP      GK++AF +     AR
Sbjct: 237 LVANDLRIGTLTRLLGDYRIANDGVTISLVYPGREFLPGKVRAFVD--LAAAR 287


>gi|322832333|ref|YP_004212360.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167534|gb|ADW73233.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 302

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +++ RVF  VA  GSF  AA  L + ++S+S  I  LE+++G++L +R  R + LT 
Sbjct: 1   MDRFNQYRVFTQVAEMGSFVRAASALSVPRASVSAAIQQLESQLGVRLLHRTTRTVRLTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +  ++E      Q S  + SGKL I     + + L+   L E L  +P 
Sbjct: 61  DGEQLLERVRPLLAEVEDIDQSFQLSQRQASGKLTIDVPSRIARRLIAPALPELLRCHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  D  DCAIR+   +  SSL+ R L  I +   A+P YL     P 
Sbjct: 121 LQLVLGSSDRAIDLVQDGVDCAIRVG-VLHDSSLVVRSLGHITLINCASPAYLSEHGLPS 179

Query: 182 SIQELDKHNL-ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L   +L I +          + + +             + VN+  S +  C+ G G
Sbjct: 180 QPDDLVGEHLAIGYISSRTGKELPWQYQSKDGHIHSVSVPHQVGVNNAESYIACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +P + V+   D+  L+ ++ D    S  V   YP   + + +L  F  +
Sbjct: 240 LIQIPRFDVQHLLDSGELIEVLPDYRAASMPVSLLYPHRRQRSRRLAVFHAW 291


>gi|77459029|ref|YP_348535.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383032|gb|ABA74545.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 308

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 128/290 (44%), Gaps = 5/290 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + V+  V   GSFT  A  L  +  ++SR +S LE  +  +L  R  R L++T+
Sbjct: 1   MDKLSNMSVYVKVVEMGSFTAVANHLDSTVGNVSRAVSALENVLDARLLQRSTRRLSVTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +    ++   LE+ + E   +++KP G LR+     L ++L+ G +  +   +PD
Sbjct: 61  AGRRFYERCIKILADLESAEAEASNAALKPRGTLRVHCVPGLARHLVTGAVLAYRNEFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+L  +  ++  D  D +I + + +  S+ + +K+   H    A+P YL+    P 
Sbjct: 121 VTVDLMLSQRMPNLLEDQLDVSILIARTLPDSAYVSQKIGVSHCVLAASPDYLERHGTPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  H  +  G  +    +++   +        P      VN   ++      G+GI
Sbjct: 181 TPDELSAHQCLLLG-TVDYVRDEWQLKSKAGDATFVPTGPSFSVNDMDAMAVAIRQGAGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LL  +   D+     LVR++ D  T    VY  Y        K+  F +
Sbjct: 240 GLLAGFTAIDDFRSGQLVRVLPDYHTYERNVYAVYTSRQFVDAKITRFID 289


>gi|120597550|ref|YP_962124.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120557643|gb|ABM23570.1| transcriptional regulator [Shewanella sp. W3-18-1]
          Length = 302

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 133/297 (44%), Gaps = 15/297 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA  GSFT AA+ L LS+  +SR I  +E  + ++L +R  R ++LT QG + 
Sbjct: 6   AIRSFVEVANCGSFTKAAQHLDLSRLQVSRHIQEIEQWLNLRLLHRTTRSVSLTLQGEET 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ L+P + IQL
Sbjct: 66  LQYCQRLLSEVAAMESRAHSHNTELVGSIRIATPIGLGQHSLFDVVDRFIKLHPKVNIQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +    +  +  D A+R  +     +LI R+L+ I     AAP YL N        +L
Sbjct: 126 AMSDSFAQLVDERVDVALRYTEQ-PDENLIARRLMMIDAVVCAAPTYLANTSPLNEPIDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN +             +W    ++     +++  L+ N    ++   + G GI  LP
Sbjct: 185 LAHNCLVH-------TAQHSWHFLKEKQSEVIKVTGNLKANDMGVLVSAALRGHGIVRLP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +      +  L  ++ D  TP  T++  Y         ++AF +F    A+ W+ 
Sbjct: 238 CDLANQYLASGQLQEVLPDFTTPGQTLWAVYLSRSYQQMLVRAFIDF---TAQQWQL 291


>gi|297620796|ref|YP_003708933.1| putative transcriptional regulator [Waddlia chondrophila WSU
           86-1044]
 gi|297376097|gb|ADI37927.1| putative transcriptional regulator [Waddlia chondrophila WSU
           86-1044]
          Length = 302

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 128/294 (43%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++     V R GS   AA +L +S +++S+QIS LE E+GI+L  R  R L  T+ G+
Sbjct: 4   LHQIETLASVGRHGSLAGAARELGVSSAAVSKQISKLEKELGIQLLVRTTRKLAFTDIGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +LE ++  + +    P GKLR+  T      ++  N+ EFL LYP I++
Sbjct: 64  AYLEQVHRIIEELEASKALVSQMKAIPCGKLRVFCTPHFASRIVVPNIAEFLNLYPKIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L +  +      +  D    +   +Q+ S L+ R+L+T      AAP YLK   EP   
Sbjct: 124 ELEIGERIPHFEGEKIDV--MMGNSMQAGSDLVHRRLLTTRYAICAAPSYLKRYGEPKHF 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H ++T     P  +  F                 ++VN    ++     G GI  
Sbjct: 182 NDLKDHRILTHRMRCPDNLLYFK------DKKKVAFAPYIKVNDAKILVDLAFQGIGIVQ 235

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L  Y VK    +  L  + +++      +Y   P       K++A  +FI  K 
Sbjct: 236 LHHYTVKKYLQSGELQELFQNLSQDDVPIYVVLPPRKYTPRKVRALIDFIDEKL 289


>gi|72383949|ref|YP_293303.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72123292|gb|AAZ65446.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 304

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 131/299 (43%), Gaps = 6/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +   VF  V  SGSFT AA+ L L ++++SR++  LE  +G++L +R  R L LT
Sbjct: 1   MPLDMNDTLVFLKVVESGSFTAAADDLRLPKTTVSRRVRELEQRLGVQLLHRTTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +   L      + +    P G LRI  +  L  NLL   L +F    P
Sbjct: 61  EAGTLYFETCRAIPGLLAKADAVVDQLRGVPRGTLRITASYSLSVNLLGPLLADFRAACP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I L+L+++ +D+  +  D A+R+   +  SS+  R L T     YA+P YL     P
Sbjct: 121 EVGIDLVLNHRTLDLVGEEIDLALRMGD-LPDSSMAARWLTTFPNRVYASPAYLARYGAP 179

Query: 181 LSIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              ++L +H  +                   T +     P    ++ +    +      G
Sbjct: 180 AHPRDLGQHAALATRVARRSGTHAWPMRQDGTGEALADYPIHPVIEADDPEVLKAPLFAG 239

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +G+ +  D I+  +     +V ++   +     ++  +P     + KL+AF +F+  + 
Sbjct: 240 AGLMMATDMIMARHAAQRLVVPVLPGWVGRCPALHAVFPRGQVQSPKLRAFIDFLVPRL 298


>gi|319780180|ref|YP_004139656.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166068|gb|ADV09606.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 296

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   VA+ GSF  AA +L ++ S++S  +S LE  +G++L  R  R +  TE+G+
Sbjct: 6   LSQLAVLATVAQCGSFRGAARELAIAPSAVSHAVSSLEARLGVRLLARSTRSVAPTEEGA 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L         +++       E+  +P+G LR+          L   L  F   YPDI +
Sbjct: 66  QLLERLRPALSEIDLALETAIETRDRPAGNLRLTVPRTAAHLALTPRLGAFASAYPDIVL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++++++  D+     D  +RL + +Q   +  R    +      AP Y +   +P   +
Sbjct: 126 EIVIEDRFTDVVEGGFDAGVRLGESLQRDMIAVRIGPDLRGAVVGAPVYFEVNPKPRHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I F          + W     R   E  +   L ++    I Q  V G+G+A 
Sbjct: 186 DLADHRCIRFRF---SSGILYRWEFERGREAIEMAVEGPLILDEDHLIAQAAVDGAGLAF 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + +  V+    +  L+R++ED        +  YP   +    L+AF +F
Sbjct: 243 VFEDYVRAPLADGRLIRVLEDWCPSFDGFFVYYPSRRQMRPALRAFVDF 291


>gi|312883273|ref|ZP_07742999.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368889|gb|EFP96415.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 312

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 125/294 (42%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F ++   GSFT AA++L+++ S++S+ ++ LE  +  KLF R  R L +T  G  +
Sbjct: 12  DLATFILITDEGSFTAAAKKLNVTPSALSKLVTRLEKALVTKLFDRTTRKLVITPTGKHV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +             +    +G L IA       ++LQ  +  FL  YP IQ++L
Sbjct: 72  YDQAIIMVSAANQAWEASTTAHTSATGSLTIAAPEAFLNSVLQPFVVPFLKKYPQIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + + +ID+  +  D A +L       +L+ +++    +   A+P YL     P    EL
Sbjct: 132 RVADGEIDLFKEGIDVAFKLTDK-PDENLVLKEIGRTDLVLCASPEYLSQRSIPSHPTEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +   +     +  F      D+           VN     +Q    G GI +  D
Sbjct: 191 IDHDCLYLAETEHDNIWSF---FAEDQYHTVSVSGKYAVNHSQMRLQGVKDGLGIGIFHD 247

Query: 247 YIVKD--NPNLV-RIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +++ +    NLV  ++ D    S    ++   YP+      +L+ F +FI  + 
Sbjct: 248 FVIAEAVEQNLVIPVLSDWTIKSNYHGSIAMQYPQTKYMPARLRVFIDFISEEL 301


>gi|227112407|ref|ZP_03826063.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 306

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 124/287 (43%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L+LT+ G K   
Sbjct: 8   EVFVTIIDRGSMIAAAETLDISRAMVTRYLAEMETWAGARLLHRTTRKLSLTDAGEKTLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+       ++E        SG LR++ +  L Q  L   +  FL  +P + I L +
Sbjct: 68  RCREMLALTADMRVEADTDDATLSGLLRVSCSQSLAQGALGMAITTFLRRHPRVAIDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L        A+P YL     P  + +L  
Sbjct: 128 NNRTVNLVEERIDLALRITNEL-DPNLIARPLSRCESVLCASPSYLNEYGIPRQLTDLSI 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+              +  D     P    L  N  L ++   + G+GIAL P Y 
Sbjct: 187 HNCLTYTYFGKSLWH----FSRSDEKFTIPVSGNLSGNESLVLLAGALEGAGIALQPRYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V     +  LV ++ +    +  +Y  Y    +    L+   +F+  
Sbjct: 243 VAPYLASGQLVALLPEYRPQAMGIYGIYTSRRQMPAALRTLLDFLVE 289


>gi|88859736|ref|ZP_01134376.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
 gi|88818753|gb|EAR28568.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
          Length = 297

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 133/300 (44%), Gaps = 14/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA+SGSF+ AAE   LS+  +SR +  +E  +  +L +R  R +TLT 
Sbjct: 1   MDKLTAMRSFIEVAKSGSFSKAAELQGLSRLQVSRHVQEIELWLQQRLLHRTTRKVTLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  + +    + ++    +++  +      G +RIA  I L QNLL   + +F   +P 
Sbjct: 61  AGEDVLKRCEYILYQTTQLEVQSLQGGHTLQGTIRIAAPIGLAQNLLIAAVTKFSAQHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I +++ +++  +  +  D A+R  +      LI R+L++I     A+P YL    +  
Sbjct: 121 VIIDILVSDRNSQLVDERIDIALRFTEQ-PDEQLIARRLMSIGSVICASPKYLATHPQIN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + EL KHN +        C  ++      ++         ++ N  +++ Q  +   GI
Sbjct: 180 DLDELVKHNCLIH------CANEYWTFIHENQQYKVKVAGNIRANDLVTLTQAALADCGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             LP  +      +   VR++ D       ++  Y      T  ++ F +FI   A  W+
Sbjct: 234 VYLPCDLANPLIASKRFVRVLSDYHCADNALWAVYLSRSYQTPLVRQFIDFI---AEHWQ 290


>gi|323494931|ref|ZP_08100023.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323310895|gb|EGA64067.1| LysR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 295

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 130/286 (45%), Gaps = 11/286 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA SGSFT  A++L +S+  ++R I  +E+ +  +L +R  R ++LT  G     
Sbjct: 8   KVFVDVATSGSFTATADRLEMSRPMVTRYIEAMESWLNARLLHRTTRKVSLTTAGEDCLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  + E+   +L  +  + SG +R+AT++  G + +   +++FL L+P + I + L
Sbjct: 68  EVKLWLKQAESL-GDLANTGGELSGTIRLATSMSFGYSQVVPVIQQFLALHPKVSIDVDL 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +   D++    D AIR+       SLI + +        A+PHYL N     +  +L  
Sbjct: 127 QDSVTDLTDSQIDIAIRIAS-TPDPSLIGKPIALCESVIVASPHYLANSEPISTPGDLTH 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  + +     K  +   W  T         +SC L  N   +++   +   G+A+ P Y
Sbjct: 186 HACLGY-----KNFQQHVWHLTKANLQQSVEVSCRLTANEATTLLNAALCHGGLAMQPTY 240

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V     N  L +++ D      TVY  Y         +++  +++
Sbjct: 241 LVSQYLKNGQLKQVLPDWKPDDMTVYVLYSSRKHMRPAVRSLIDYL 286


>gi|86361206|ref|YP_473093.1| transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|86285308|gb|ABC94366.1| probable transcriptional regulator protein [Rhizobium etli CFN 42]
          Length = 307

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 136/293 (46%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A   S+  AA    +S S+I + ++ LE  + ++LF R  R ++LTE
Sbjct: 1   MDSLASLFAFVHAAEQQSYVAAARIAGVSPSAIGKAVARLERRLRVRLFNRTTRSISLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+ L+     +   ++  +  + +S  +P G+LR++    +G +LL   L  F   +P+
Sbjct: 61  EGAVLYERYKRIIDDMQDAEATVLQSRERPRGRLRVSVPHIVGHHLLMPMLPAFAERFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  +++ ID+  +  D  +R  + +  + LI R L   H     +P Y +   +P 
Sbjct: 121 IELDVDFEDRVIDLVAEGLDVVVRSGE-LADARLIARHLGDQHFVVCGSPDYFERHGQPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H  I F       +  +   A  +R +       L  N+  + ++    G G+
Sbjct: 180 TPDDLSRHACIRFKYPSSGRVAPWALRAPYERLLLP---RSLTFNNTDAGLRAAQGGLGL 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A LP Y+ +       L+ ++   + P  ++   +P   + + K++AF +F+ 
Sbjct: 237 AHLPVYVAQPAMRAGTLIPVLTSFMVPFGSLSLVWPSNRQLSPKVRAFVDFVV 289


>gi|197337480|ref|YP_002158016.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314732|gb|ACH64181.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 310

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA++L ++ S++S+ I+ LE  + +KLF R  R L +TE G K+
Sbjct: 12  DLATFIVVVNEGSFTAAAKKLGVTPSALSKLITRLENALSVKLFERTTRSLLITESGKKI 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++ +  +    +            PSG L +A        +LQ  +  FL  YP IQ++L
Sbjct: 72  YQQSVIMIEAAQQAVDISSSEHTVPSGSLTVAAPKAFLTIVLQPLITPFLTKYPKIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D   RL     +  L+ +++  +++   A+P YL+    P   QEL
Sbjct: 132 RASDGDIDMIAQGIDVVFRLTDK-PTEGLVMKEIGKVNLSLCASPTYLEERGIPHLPQEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +  G+     + +F                   VN     +     G GI + PD
Sbjct: 191 ANHDCLFLGETTTDHIWEF---VKGTESHVIAVSGRYAVNHSQMRLNGVKDGFGIGIFPD 247

Query: 247 YIVKDNP---NLVRIMEDVITPSFTVYFC----YPEALKNTGKLKAFRNFIFL 292
           +++K+      ++ ++ D        +      Y +      +LK F  F+  
Sbjct: 248 FVIKEALANNEVISVLSDWQI-KGNYHGVIAMQYAQNKYMPSRLKVFTEFVKE 299


>gi|254295876|ref|ZP_04963333.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157805909|gb|EDO83079.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 314

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 1   MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   +  +   Y D+ +++ 
Sbjct: 61  ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYADVTVEIT 120

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P +I +L
Sbjct: 121 LSDRVVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPDYLAKHGTPATIADL 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ I      P        ++ V      P    + VN    +    + G+GIALL  
Sbjct: 181 QHHSFI---RREPNETLLDAAISEVAAASRVPMSGNVIVNHLEGLRVAVLGGAGIALLGT 237

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V ++     LV ++ D + P    +Y  Y      + K+++F +F+  +
Sbjct: 238 EVVGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRSFVDFLADR 288


>gi|33591527|ref|NP_879171.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33571169|emb|CAE40670.1| probable LysR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332380886|gb|AEE65733.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 293

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 140/293 (47%), Gaps = 9/293 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D LR+F  V  +GS   AAE L  + S +SR ++ LE E+G+ L  R  R + LT
Sbjct: 1   MPLNSDALRLFLAVVDAGSMRAAAELLGHTASGVSRGLARLEAELGVTLLTRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +  +    +   L+  Q  ++    +P+G+LR+  +  +  + L  +++EF   YP
Sbjct: 61  EEGRQFQQKARAILLALDEAQECMRIRHQQPAGRLRVDASAPVMLHCLVPHVEEFSRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ++L  +++ +D+    +D A+R    +  SSL  R      +   A+P YL    +P
Sbjct: 121 EIQLELTSNDRIVDLIEHRSDVALRAG-VLSDSSLHARAFKPSTLLVVASPAYLARHGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +  L +H L+ F    P+ +    W    D          +  +S  ++    + G+G
Sbjct: 180 RDVAALRRHRLLGFTQ--PETLN--RWPLRHDGGSTFVVEPDIGASSGETLRGLALAGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNF 289
           IA L D++++ +    +LVR++E         ++  Y    +   ++  F +F
Sbjct: 236 IACLSDFMLRADLASGSLVRLLESADNGYRQPLHAVYYRNTQLARRIACFLDF 288


>gi|260775737|ref|ZP_05884633.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608153|gb|EEX34322.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 294

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 126/293 (43%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  V    SFT AA  L L +S+++  +   ET +G++L  R  R ++ T 
Sbjct: 1   MDRIDAMRVFTRVLERRSFTLAATDLGLPRSTVTDAVKKWETRLGVRLLERTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++   ++  +   Q+    P G LR+       ++ +   L  FL  YP 
Sbjct: 61  DGDNFYARCVQILRDIDDAESAFQD--ENPKGALRVDAHGSFSRHFILPRLGAFLQRYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L   ++ +D   +  DC +R+   +Q   ++ R++  +     A+P YL     P 
Sbjct: 119 INLFLSEADRRVDPLREGIDCVVRIGH-LQQDDVVARQIGLLEEVTVASPAYLAKLGTPR 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+  L  H ++ +                V+R +    ++  L VNS  S+++      G
Sbjct: 178 SLNALKDHQMVGYCASGQSVAMPLE--FQVNRKVTTQHLAASLWVNSAESLVEAAKRDLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +P Y V +      LV ++E        V+  +P   + + +++ F  ++
Sbjct: 236 IIQVPRYHVANALSQGELVALLEAYPPEPSPVWVLFPPHRQASSRVRVFIEWL 288


>gi|149187638|ref|ZP_01865935.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148838518|gb|EDL55458.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 299

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 13/293 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA   SFT AAE+L LS+  +SR ++ +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFVEVAHCASFTKAAERLGLSRLQVSRHVNEVEQWLEQRLLHRTTRKVSLTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       + H+    ++  Q  +   SG +R+A  I L QN+L   +++F   +P+
Sbjct: 61  AGEQALARCESILHETSQLELSSQPQTPYLSGTVRVAAPIGLTQNILLDAVEQFTEQHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL   +   ++  +  D A+R        +LI RKL++I     A+ +Y++   EP 
Sbjct: 121 VVIQLFASDSFAELVDERIDIALRYTNKPAD-NLIARKLMSIDSLICASKNYIEKHGEPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              +L  HN           +E  +W            +S  +  N    +++      G
Sbjct: 180 RFDDLSNHNCFLH-------LERTSWEGVKGGETVSVNVSGNITANDLGVLVKAAQRDKG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I LLP  +     ++ +L  I++D   P+ T++  Y         ++ F +F+
Sbjct: 233 IVLLPCDLANPLIESGSLTPILKDYAIPTSTLWAVYLSRSYQLPIVRQFIDFL 285


>gi|15596525|ref|NP_250019.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|254239699|ref|ZP_04933021.1| hypothetical protein PA2G_00322 [Pseudomonas aeruginosa 2192]
 gi|9947267|gb|AAG04717.1|AE004562_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126193077|gb|EAZ57140.1| hypothetical protein PA2G_00322 [Pseudomonas aeruginosa 2192]
          Length = 302

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 139/296 (46%), Gaps = 11/296 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T + Y  L   +  L ES  +PSG+LRI+        ++   L EF+  YP +Q+++ 
Sbjct: 70  EQTEQPYRDLVRAREALGESLAEPSGQLRISALHLAKNLVIAPMLNEFVRRYPKVQLEIR 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +LD
Sbjct: 130 YEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEYGTPASVADLD 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI--ALL 244
            H  + F    P+      W    D R +     +        +I++    G+GI  A +
Sbjct: 190 GHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTEAIIEAARAGAGIAQAFI 247

Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 248 RERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299


>gi|288935847|ref|YP_003439906.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890556|gb|ADC58874.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 294

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 8/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L +F  V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+      +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYHNVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAVFKHRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   + S  +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIIAERFDAGVRLGPEVGSGMIAVRISPDMEMAVVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L     I +          + W   VD + I  P              +   LG G+A
Sbjct: 186 ADLVAQPCIAYQF---GDGSLYAWELNVDGKKITHPPQGQWAFADSYMEAKAARLGLGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P+ ++ D+     L+R+++         +  YP     +  L+A  +
Sbjct: 243 YVPEELITDDLAQGTLIRVLQRYSQRLEGSFLYYPH-RNVSPALRAVID 290


>gi|330818511|ref|YP_004362216.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
 gi|327370904|gb|AEA62260.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
          Length = 318

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 144/294 (48%), Gaps = 18/294 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE  +G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQTLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +S+ P G+LR+ +    G   +   + ++   Y D+ +++ 
Sbjct: 67  ERLVQALTELDEAGQAVGAASIVPQGRLRVTSLSAFGLRHVMNAVTDYAARYADVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P ++ +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPFGLKSSSLVARQIATAHILLVASPAYLEEHGTPATLADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
           ++HN +                +++D    + R+     L VN   ++    + GSGIA+
Sbjct: 187 EQHNYL----------RRDAGSSSIDAQAFDSRVTLSGNLIVNHLEALRVAVLSGSGIAM 236

Query: 244 LPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L   +V D+     LV ++ DV+ P    +Y  Y      + K+++F +F+  +
Sbjct: 237 LGTEVVGDDIEAGRLVPLLLDVMPPRELPIYAVYASRRHVSAKVRSFVDFLADR 290


>gi|319780135|ref|YP_004139611.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166023|gb|ADV09561.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 302

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 126/294 (42%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +  F  VAR  +F  AA QL ++ S++S+ +  LE  +G  LF R  R + LTE G 
Sbjct: 12  LEGIEAFLAVARHRNFRRAAAQLGVTPSAVSQAVRALEARMGAALFVRTTRSVGLTEPGQ 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        + +L      +++   +P+G LR++    +   +L+  +  F   YP+I++
Sbjct: 72  RFLDRAGPAFEELVAAGEAVRDIGQRPTGLLRLSVPRAVVPLILEPMIASFCRAYPEIEL 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D++    D  IRL + I    +  R   +       +P YLK    P  + 
Sbjct: 132 EIAASDEMVDLAAGGFDAGIRLGQFIAVDMVAVRLTPSFSFVVVGSPDYLKRHGRPERVD 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H  +    L         W         E  +S  L  + Y +++   + G G+A 
Sbjct: 192 DLRNHACL---RLRRSNGAIAPWAFVDGNETIEAMLSGPLIAHDYPTLLGAAMRGVGLAQ 248

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            P  I +       L  +++ +   +  V+  +P   +   KL+AF + +   A
Sbjct: 249 TPRPIAEAPIAEGKLEPVLDGIAATTPGVFLYHPGKRQVLPKLRAFIDHLKSAA 302


>gi|87121945|ref|ZP_01077830.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86162743|gb|EAQ64023.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 302

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 127/302 (42%), Gaps = 10/302 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L +F  +A+SGS T +A+Q  ++ ++ S  +  LE ++G+ LF R  R L +T  
Sbjct: 1   MNTSDLTLFVHIAQSGSITASAKQAGITTAAASSALKRLEQQLGVPLFMRSTRQLRITLA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K           LE  ++   ++    SG L ++ + D G+N+L   + E L  +P +
Sbjct: 61  GEKFLFHCQLALASLEMGRVNANQAVGNISGHLTLSVSSDFGRNILMPWIDEMLEAHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L + +   +   D  D A+R  KP + S+L+   +  ++    A+P YL    EP  
Sbjct: 121 SLDLNVSDSLSNFFEDKVDIALRYGKP-KDSNLVAFHIAKLNRITCASPEYLAKYGEPKE 179

Query: 183 IQELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +L  H  + +   D +    E  +        +   RI     N    + ++ V G G
Sbjct: 180 PDDLQNHACLLYRINDRLFNLWEYSDKTQHYRVKVTGNRI----CNDTDIVRRWAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +A      +     N  L  I+ D  +P   +Y   P     T  +  FR  +  K  + 
Sbjct: 236 VAYRSQIDISAELSNGQLKPILMDYQSPPVDLYLICPSRSVITPAVIYFRELLRKKCGEQ 295

Query: 298 KF 299
            F
Sbjct: 296 GF 297


>gi|262194884|ref|YP_003266093.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262078231|gb|ACY14200.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 311

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 133/290 (45%), Gaps = 8/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V +  +F  AA  L LS+S++S++++ LE  +G +L  R  R L LT+ G+  
Sbjct: 11  AILVFVEVVKQQNFRAAARALGLSKSTVSQRVADLEEHLGARLLTRTTRSLKLTDIGASF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           HR  +     L   +  +     +PSG+LR+   ++LG +LL   L  +   YP+++I +
Sbjct: 71  HREVAPALDALRNAEALVGTLQARPSGRLRLTAPVELGHDLLGSVLGRYATQYPEVEIDV 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSIQE 185
           +L ++ +++  +  D AIR+  P+  S+L+ R+L +   +   A+P YL     P + ++
Sbjct: 131 VLTDRMVNLVEEGFDLAIRVG-PLADSNLVSRRLRMPQELCTVASPRYLAQRGTPKTPRD 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +            +            P I+   VNS+  + +  +  +GIA +P
Sbjct: 190 LAAHRCLVMTGAQTPSAWRYRVDGKERAFSVTPHIA---VNSFTVLREVALADAGIARMP 246

Query: 246 DYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               + +     L R++             YP A   +  L+A  + +  
Sbjct: 247 LRYAEGDIAAKRLRRVLARYAPQGRATLVVYPPARHISPALRAMVDLLVE 296


>gi|262194735|ref|YP_003265944.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262078082|gb|ACY14051.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 296

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 133/297 (44%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V   GSF+ AA  L + QS++S+ I+ LE E+  +L  R  R   +TE G 
Sbjct: 4   LTAMNAFVRVVELGSFSAAAADLRVEQSTVSKWIAALEDELAARLIDRTTRQRRVTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++   E+         E+Q+   +P G+LR++  +  G+  +      FL  YP++++
Sbjct: 64  RFYQRAREIATSYAAAAAEVQD-DERPRGRLRVSAPVVFGRLFVVPAAVRFLRRYPEVEL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +D+     D A+R+  P+  SSL  R L     H  A P YL  C  P   +
Sbjct: 123 DLRMSDRYVDLVEGGFDLAVRVGAPL-DSSLRARTLARSRRHLVATPRYLARCGTPERPR 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H  +    L P       W+          R+S     ++  +++       G+A+
Sbjct: 182 QLSVHACLVHSGLAPGS----PWVFRRGSRTQRVRVSARFAADNSEALLAMARASLGVAV 237

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           L D++V  +     LV ++ +   P+  V        + T  ++AF + +  FL AR
Sbjct: 238 LADWLVARDLERGRLVSLLPEYELPAAPVQALSAPGRRATPTVRAFADVLADFLAAR 294


>gi|288961835|ref|YP_003452145.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914115|dbj|BAI75601.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 318

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 136/297 (45%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D+LR F  +  +GS + A  +++L+ S +S++++ LE     +L  R  R L LT
Sbjct: 1   MLDDIDELRTFVRIVAAGSLSAAGREMNLALSVVSKRLASLERRTDTRLVARSTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +LH     +  ++   +  L    V+P G LR+     LG+  +    +  +  YP
Sbjct: 61  EEGRRLHAHAQRILAEIAEAEEALSHGRVEPRGVLRVGAPAALGRIHVGPVCRALVEAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + L L ++ +D+  +  D  +R+  P + S+L+ R+L   H     AP YL+    P
Sbjct: 121 GISVDLCLTDRMVDLIDEGMDVVVRIGVP-RDSTLVMRRLADNHRVVVGAPAYLERRGHP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ ++L++H+ I +     +       L      +     S L+ ++      + + G G
Sbjct: 180 VAPRDLERHDCIQYRGAGGRWR-----LLGPGGMVEVDTASRLRSDNGDVAQDWALAGCG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + L     V+D+     L+R++ D       V   +P   +   +++ F + +  + 
Sbjct: 235 LILKSWIDVQDDLAAGRLMRVLPDWHGDPAPVCALFPSQRQLPTRVRLFLDAMAQRL 291


>gi|167899483|ref|ZP_02486884.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167923994|ref|ZP_02511085.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
          Length = 301

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 126/296 (42%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE E+G  L  R  R L +TE
Sbjct: 6   DVNLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEIGASLVVRTTRRLNVTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    ET    +   +    G LR++  +D G  ++   L      +P 
Sbjct: 66  AGRAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPA 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P 
Sbjct: 126 LEIELQCDDRVVDLVRDNLDVAIRLGR-LADSNHRAAKLGGFERWLVASPAFVARHGAPA 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L     +    +    +E  N  A  +R     R      N+  +     + G G 
Sbjct: 185 SPEALGALPYVMLSTVPRTTLELAN--AHGERASVRCR-RAFASNTATACRAAVLAGGGF 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +   +   D+     LVR++     P   ++  +P A   + K++A  + +  + 
Sbjct: 242 GVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRALIDMLKTRL 297


>gi|34498252|ref|NP_902467.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34104106|gb|AAQ60465.1| probable transcriptional regulator, LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 297

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 124/297 (41%), Gaps = 7/297 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M FD    LR+F   ++ GSF+ A  +  LS ++ S  I  +E  +  +LF R  R L L
Sbjct: 1   MPFDRLADLRLFQDASQLGSFSAAGRKHGLSPAAASACIQRMEAALNARLFQRTTRRLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G        +    LE  +  LQ++  + SG +R++   DLG+N L   L  F   +
Sbjct: 61  TEAGETYLAYCRQALELLEEGEHRLQQAQQELSGVIRLSAPSDLGRNRLLDCLDRFGAEH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +   L L +   D+  D  D AIR  +P   SSL+ R+L        AAP  L+   +
Sbjct: 121 PAVHFSLSLSDTPADLIGDDIDLAIRYGQP-ADSSLVARQLAASRRVVCAAPSLLEKLGQ 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   Q+L     +T         E         R +   R+   Q N    + ++ V G 
Sbjct: 180 PSHPQDLAGLPTLTLTTGHGPMNEWRYRDKGEIRSLRLERVR--QSNDGEVLRRWAVQGH 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G A      + D+     L  +++D       ++  YP       +++   +F+  +
Sbjct: 238 GFAYKSRLDIADDLAAGRLTTVLDDYFIEPAPLHLLYPGHRLQPARIRRLIDFLLDQ 294


>gi|254234449|ref|ZP_04927772.1| hypothetical protein PACG_00299 [Pseudomonas aeruginosa C3719]
 gi|126166380|gb|EAZ51891.1| hypothetical protein PACG_00299 [Pseudomonas aeruginosa C3719]
          Length = 302

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 139/296 (46%), Gaps = 11/296 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T + Y  L   +  L ES  +PSG+LRI+        ++   L EF+  YP +Q+++ 
Sbjct: 70  EQTEQPYRDLVRAREALGESLAEPSGQLRISALHLAKNLVIAPMLNEFVRRYPKVQLEIR 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +LD
Sbjct: 130 YEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEYGTPASVADLD 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI--ALL 244
            H  + F    P+      W    D R +     +        +I++    G+GI  A +
Sbjct: 190 GHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTETIIEAARAGAGIAQAFI 247

Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 248 RERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299


>gi|269103119|ref|ZP_06155816.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163017|gb|EEZ41513.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 312

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 121/293 (41%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   +R GSF+  A  + ++ +++S  I  LE +VG  LF R  R L LT +G 
Sbjct: 4   LNDLQVFIEASRMGSFSKVANSMGITPAAVSAAIKRLEEQVGFPLFIRSTRHLRLTNEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 S   + L+    ++       SGKL I    D G+NLL   + EF  +YPDI I
Sbjct: 64  IFCDKASMAVNILQDGLDQIANDRNAFSGKLHITAPSDFGRNLLLTWIAEFQEIYPDITI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLSI 183
           +L L +K  DI     D AIR  +P   S+L+   L  +      A P Y+         
Sbjct: 124 KLELSDKVADIYSQPVDIAIRYGQP-ADSNLVAISLCQLNEGITCATPEYIAANPTITEP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + F  ++   + +    +  +R         +  N    I +  + G GI  
Sbjct: 183 MDLLAHNCLCF--MVADTLYNKWQFSCDNRSEIVHVSGNMTGNDSDMIHRLALKGKGIIH 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                + ++     LV I       S  +Y    +       ++ F+ FI  K
Sbjct: 241 TSLMDLSEDIIAGRLVPIFPQWRGFSAPLYMVCADRRLLNPTIRKFQEFIKEK 293


>gi|190574073|ref|YP_001971918.1| putative LysR family transcriptional activator [Stenotrophomonas
           maltophilia K279a]
 gi|190011995|emb|CAQ45617.1| putative LysR-family transcriptional activator [Stenotrophomonas
           maltophilia K279a]
          Length = 300

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 115/268 (42%), Gaps = 7/268 (2%)

Query: 28  HLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQES 87
            ++ S+ S+ I+ LE  +G +L  R+ R ++LT +G +       +  ++   + EL ++
Sbjct: 27  GITPSAASKTIARLEERLGARLLNRNTRSVSLTAEGEQFLERCRRIMIEVAAAERELTDA 86

Query: 88  SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLR 147
              PSG+L+++    L   L+   L  F   +P I++ L   ++ +D+  +  D  +R  
Sbjct: 87  HAAPSGRLKVSLP--LASGLMLPVLSAFAQRFPAIELDLHFSDRMVDVIEEGFDAVVRTG 144

Query: 148 KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNW 207
            P   S L  R L +  +    AP Y      P    +L  H  +         +E +  
Sbjct: 145 SP-ADSRLHGRNLGSTRLLCVGAPAYFARRGTPQHPDDLSGHACLLHRFPGTGLIERWP- 202

Query: 208 LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVIT 264
           L   +        + +  N   +I+   + G GIA LPD+  +D     +LV +++   T
Sbjct: 203 LPAREGGAETRLTAAMTANHLETILHMAIDGHGIACLPDFATRDALDRGSLVSVLDPWST 262

Query: 265 PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              T +  +P       +++ F +F+  
Sbjct: 263 ERSTFWALWPSHRHQQPRVRVFVDFMAE 290


>gi|91224090|ref|ZP_01259353.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91191001|gb|EAS77267.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 305

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 127/298 (42%), Gaps = 16/298 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  + +      A  +L LS ++++ ++  +E   G+KL  R  R ++LT+ G+  H
Sbjct: 1   MTLFVSIVKHQGLAAAGRELGLSPATVTARLQAIEERYGVKLLNRSTRHVSLTDAGAMYH 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   ++ T+  LQ    +  G L+I+   D+G+ ++   +  F   YPD+   L 
Sbjct: 61  QACLNIIDSVKETENLLQTGISEVRGTLKISAPRDIGKQIISPMVSAFSEQYPDVTPYLY 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++   +++    D  IR  + +  S+LI RKL +      A+P YL     P   Q+L 
Sbjct: 121 LNDNLSNLAESGLDLVIRYGE-LADSNLISRKLASSQRVLCASPDYLAKQGVPNCPQDLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
            H  +    ++    E   W    +       ++  +  +    I Q+ + G+GIAL   
Sbjct: 180 VHRCLA---MVRSNEELKTWHFKDEESHQTITVTPKRFSDDGEVIRQWALDGAGIALKSI 236

Query: 247 YIVKDNP---NLVRIMEDV--------ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             ++ +     LV +++                ++  Y        +++ F +F+  +
Sbjct: 237 LDIQQDLKQQRLVTVLDGYMKNFSAFSQGAEADLHVIYQSRQYQPKRVRLFLDFLVEQ 294


>gi|86159624|ref|YP_466409.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776135|gb|ABC82972.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 297

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 123/299 (41%), Gaps = 10/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VA + SF  A + L ++ S++S+ +  LE  +G++LF R  R + LT
Sbjct: 1   MRSDLAALEAFLAVADNRSFRAAGQVLGVTSSAVSQAVHKLEERLGVQLFARTTRSVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L       + ++  T   L E   +P+G LR+  +        +G L  FL  +P
Sbjct: 61  EAGEHLRAGLRPAFAQMRETVDSLGELKGRPAGLLRLNVSSVAEAIFSEGVLAAFLARHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ + +D+   DI  +  D  I+L + I    +             A+P YL     P
Sbjct: 121 GIRLDVAVDDTGTDIVKEGFDAGIQLGEVIAQDMVAVNVTREERQIVVASPRYLAAHGVP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L KH  I +          +    +  R I     + +  N    +++  + G G
Sbjct: 181 RRPRDLHKHACIGWRVYSRPAPYRWE-FTSNGREIEVAIEARVDTNEMAVMVRLALDGVG 239

Query: 241 IA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA        P      +  LV ++++   P    +  YP   +   KL+A  +F+  +
Sbjct: 240 IAAGLERTWAPHLA---SGKLVSVLDEYCPPFSGFFLYYPRRTRVPAKLRALIDFLKER 295


>gi|222082378|ref|YP_002541743.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221727057|gb|ACM30146.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 297

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VA+  SFT AA +L +SQS++S+ I  LE  +G++L  R  R +  T+ G
Sbjct: 5   NFNDLAAFATVAKERSFTKAAAKLGVSQSALSQTIKALEERLGLRLLTRTTRSVAPTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  +  +E     L E   KP+G +RI        ++LQ  LK FL  YPDI 
Sbjct: 65  ERLLQTVAPRFEDIEAELAALSELREKPAGTIRITAGEHPAISVLQPALKRFLPNYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++I+D    DI  +  D  +R+ + +    +  R    + M    +P Y +    P + 
Sbjct: 125 IEIIVDYGLTDIVAEGFDAGVRIGEQVAKDMIAVRIGPEMRMAVVGSPAYFEKRPAPQTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P     F W L    R +       L  N+    +   + G G+A
Sbjct: 185 QDLTAHSCINM--RLPTYGGLFPWGLEKDGREVKVRGEGQLVFNNLGMRLHSALDGLGVA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V        L+R++ED        +  YP    ++  L    + +
Sbjct: 243 YMPEDQVLSYVAEGRLIRVLEDWCPYFPGYHLYYPSRRHSSPALTLLVDIL 293


>gi|222080941|ref|YP_002540304.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725620|gb|ACM28709.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 295

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 124/293 (42%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V ++ SF  AAE + +  S++SR+IS LE  +G++L +R  R + LTE G 
Sbjct: 4   LNDMAMFVEVVKARSFRRAAETIGMPNSTLSRRISSLEKAIGLRLLHRTTRRIELTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +      +L E    PSG LR +  +D     L   + EF   YPDI  
Sbjct: 64  LYFERCKRIVDEARLAHEQLGEILTPPSGVLRASLPVDFALIYLAPLIAEFARRYPDIDF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  L  + +D+ ++  D AIR+      S+L+  +L  +  + YA+P YL+   EP    
Sbjct: 124 EFDLTPRRVDLVVEPFDVAIRMGGS-PDSNLMSWELACLPRYLYASPRYLELFGEPNEPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  + F             L      +        ++N    I +   L  GIA+L
Sbjct: 183 DLIRHESLQFPAQSGVWT-----LNHGHETVEVAAGGRFRLNGVSMIRRLATLDLGIAML 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + IV D      L R++         VY    E      + + F  F+  + 
Sbjct: 238 AEEIVADELAEGRLRRVLPQWQGAPTPVYAIT-ETRLLPARTQRFIEFLRERL 289


>gi|157145965|ref|YP_001453284.1| hypothetical protein CKO_01718 [Citrobacter koseri ATCC BAA-895]
 gi|157083170|gb|ABV12848.1| hypothetical protein CKO_01718 [Citrobacter koseri ATCC BAA-895]
          Length = 297

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 123/290 (42%), Gaps = 9/290 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS + AA  L +S+  +SR +  +E   G +L +R +R LT+T  G      
Sbjct: 9   VFNHICDLGSLSAAARALGISRPMVSRYLDEMEKWAGARLIHRSSRRLTITPAGEDALMK 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           T  +     +  I        PSG LR+A       ++L   L  FL  YP+++I++ ++
Sbjct: 69  TRTLARL--SLDIAGATGREVPSGTLRVACAHFTAMHILAPMLPAFLARYPELRIEVEIN 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ + +  +  D AIR+    +  + I R+L        A+P YL     P + + L +H
Sbjct: 127 NQPVSLVGERIDVAIRITDNPEPGT-IARRLGDCESVLCASPDYLHRYGTPQTPEALAQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + +     K    +++L     PI       L       + +  + G GIAL+P+   
Sbjct: 186 NCLYYSGFAGKS---WHFLDEQGEPISVAIKGNLSAGISSLLCEAALAGMGIALVPEKEA 242

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++      LVR++  +      VY  Y         L+ F   +    RD
Sbjct: 243 REGLAQEKLVRLLPHLQPRQLAVYGLYLSREHQPAALRLFLEAVQGAMRD 292


>gi|15598034|ref|NP_251528.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107102388|ref|ZP_01366306.1| hypothetical protein PaerPA_01003450 [Pseudomonas aeruginosa PACS2]
 gi|218890964|ref|YP_002439830.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235827|ref|ZP_04929150.1| hypothetical protein PACG_01768 [Pseudomonas aeruginosa C3719]
 gi|9948924|gb|AAG06226.1|AE004710_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126167758|gb|EAZ53269.1| hypothetical protein PACG_01768 [Pseudomonas aeruginosa C3719]
 gi|218771189|emb|CAW26954.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 323

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 133/296 (44%), Gaps = 7/296 (2%)

Query: 3   FDWDK-LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R F  V   GSFT AA+ L  S +++SRQ++GLE  +  +L  R+ R + +TE
Sbjct: 1   MDLLQGIRTFVRVVEHGSFTQAAQALGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +    ++   +     ++++S    SG+LR+    +LG   L   L ++L  +PD
Sbjct: 61  SGLRYYEHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L      +  +  D  I L + +  S+L+ R L  +     AAP YL     P 
Sbjct: 121 VSVDLTLAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L +H  +      P C + + ++      + +     L+VN   +       G G+
Sbjct: 181 TPEDLLRHRCLNVA--APSCPQGWAFVGERGETLLD-LDEALKVNLPEAACAAAAAGLGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LLP ++        +L+R++         V+  Y        K++ + +F+  + 
Sbjct: 238 CLLPGFVAARALQEGSLLRLLPGHRLHVREVFVLYSSRRYLDAKIRTWVDFLRERL 293


>gi|291619338|ref|YP_003522080.1| PtxR [Pantoea ananatis LMG 20103]
 gi|291154368|gb|ADD78952.1| PtxR [Pantoea ananatis LMG 20103]
          Length = 313

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 129/285 (45%), Gaps = 6/285 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +  F  +  SGS + AA QL ++Q +ISR++  LE  +G+KL  R    L LT+ G 
Sbjct: 13  IELMHTFIRIVESGSLSAAALQLGITQPTISRRLQSLEQGLGLKLILRTTHALKLTDDGE 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++       + EL  +   P G LR+      GQ+ L   L  F+  YP ++I
Sbjct: 73  RCYAQARQLLATWHALEDELTGAGSDPVGILRVRAPHAFGQDQLVTPLVNFMRRYPRLRI 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L+++  D   +  DCAI++   +   S++   L  +     AAP  L+       + 
Sbjct: 133 EWMLNDRTPDFVAENVDCAIQVGA-LTDPSVVAVLLAEVPRIVVAAPALLQQYPPINQVA 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +         +   +       P+  P +  L  +S  ++ +  + G G A+L
Sbjct: 192 QLGDLPWLALTSFYRNEIALQH--KDKGEPMNLPIVPLLSSDSLFAVRKAALAGLGTAIL 249

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             ++++++    NL+++M +   P   V+  YP A     +L AF
Sbjct: 250 STWVIQEDLAQGNLIQLMPEWQAPPLPVWLTYPWASYYPARLTAF 294


>gi|91778485|ref|YP_553693.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691145|gb|ABE34343.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 303

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 121/273 (44%), Gaps = 6/273 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L LS +++S+ ++ +E+  G+ L  R  R ++LT +G         + + ++     L
Sbjct: 27  RELGLSTAAVSKHLAQMESRAGVSLVNRTTRRMSLTPEGELYLTRARRILNDMDDLAQLL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             S   P G LR+  T+  G++ +   +  F+  +P++ +QL L       S D  D  +
Sbjct: 87  GGSQAAPKGLLRVNATLGFGRSHVAPLISTFVRRFPEVDVQLQLSVDPPPFSDDAFDVCV 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKC--M 202
           R  +P   + +I R++ +      A+P YL   R P S  EL +HN I            
Sbjct: 147 RFGEP-PDARVIARRVASNRRLLCASPRYLAQRRTPRSPAELAQHNCIGIRQGGDGYGLW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
              +     ++         L  N     +++ + G GI +  ++ + D   +  LV I+
Sbjct: 206 RLTSGRGAAEKTETVRVRGNLTTNDGEIAVKWALDGHGILMRAEWDIADYLADGRLVHIL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            D  TP   +Y  YP+ L+ T ++KAF + +  
Sbjct: 266 PDYRTPGADIYAVYPQQLQMTARVKAFVDMLIE 298


>gi|22127030|ref|NP_670453.1| DNA-binding transcriptional activator GcvA [Yersinia pestis KIM 10]
 gi|45442590|ref|NP_994129.1| DNA-binding transcriptional activator GcvA [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597332|ref|YP_071523.1| DNA-binding transcriptional activator GcvA [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806497|ref|YP_650413.1| DNA-binding transcriptional activator GcvA [Yersinia pestis
           Antiqua]
 gi|108813133|ref|YP_648900.1| DNA-binding transcriptional activator GcvA [Yersinia pestis
           Nepal516]
 gi|149366970|ref|ZP_01889003.1| glycine cleavage system transcriptional activator [Yersinia pestis
           CA88-4125]
 gi|153947641|ref|YP_001399983.1| DNA-binding transcriptional activator GcvA [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419649|ref|YP_001607574.1| DNA-binding transcriptional activator GcvA [Yersinia pestis Angola]
 gi|165927121|ref|ZP_02222953.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165939821|ref|ZP_02228361.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011919|ref|ZP_02232817.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166211648|ref|ZP_02237683.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167400001|ref|ZP_02305519.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419823|ref|ZP_02311576.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425269|ref|ZP_02317022.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|170023301|ref|YP_001719806.1| DNA-binding transcriptional activator GcvA [Yersinia
           pseudotuberculosis YPIII]
 gi|186896438|ref|YP_001873550.1| DNA-binding transcriptional activator GcvA [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928197|ref|YP_002346072.1| DNA-binding transcriptional activator GcvA [Yersinia pestis CO92]
 gi|229837736|ref|ZP_04457896.1| DNA-binding transcriptional dual regulator [Yersinia pestis
           Pestoides A]
 gi|229840958|ref|ZP_04461117.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843059|ref|ZP_04463209.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903576|ref|ZP_04518689.1| DNA-binding transcriptional dual regulator [Yersinia pestis
           Nepal516]
 gi|270487357|ref|ZP_06204431.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294503046|ref|YP_003567108.1| glycine cleavage system transcriptional activator [Yersinia pestis
           Z176003]
 gi|21960079|gb|AAM86704.1|AE013916_1 positive regulator of gcv operon [Yersinia pestis KIM 10]
 gi|45437455|gb|AAS63006.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51590614|emb|CAH22255.1| glycine cleavage system transcriptional activator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776781|gb|ABG19300.1| glycine cleavage system transcriptional activator [Yersinia pestis
           Nepal516]
 gi|108778410|gb|ABG12468.1| glycine cleavage system transcriptional activator [Yersinia pestis
           Antiqua]
 gi|115346808|emb|CAL19694.1| glycine cleavage system transcriptional activator [Yersinia pestis
           CO92]
 gi|149290584|gb|EDM40660.1| glycine cleavage system transcriptional activator [Yersinia pestis
           CA88-4125]
 gi|152959136|gb|ABS46597.1| glycine cleavage system transcriptional activator [Yersinia
           pseudotuberculosis IP 31758]
 gi|162352464|gb|ABX86412.1| glycine cleavage system transcriptional activator [Yersinia pestis
           Angola]
 gi|165912224|gb|EDR30861.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921017|gb|EDR38241.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989185|gb|EDR41486.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207419|gb|EDR51899.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962564|gb|EDR58585.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167050709|gb|EDR62117.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055669|gb|EDR65453.1| glycine cleavage system transcriptional activator [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169749835|gb|ACA67353.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186699464|gb|ACC90093.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679346|gb|EEO75449.1| DNA-binding transcriptional dual regulator [Yersinia pestis
           Nepal516]
 gi|229689935|gb|EEO81994.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697324|gb|EEO87371.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229704113|gb|EEO91125.1| DNA-binding transcriptional dual regulator [Yersinia pestis
           Pestoides A]
 gi|262361082|gb|ACY57803.1| glycine cleavage system transcriptional activator [Yersinia pestis
           D106004]
 gi|270335861|gb|EFA46638.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294353505|gb|ADE63846.1| glycine cleavage system transcriptional activator [Yersinia pestis
           Z176003]
 gi|320014161|gb|ADV97732.1| DNA-binding transcriptional dual regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 305

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 128/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRAFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFTSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNAAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +    S L   +L    +    AP  L          
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWSGLRTERLYAEFLLPVCAPSLLTGENGLKVPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +WLA   R +G P+I+  Q    +    ++Q  V G GI
Sbjct: 185 DLANHTLLH-------DTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|167571022|ref|ZP_02363896.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 326

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  ++ +  +P G LR+A +  L    +   +  +   YP +++QL 
Sbjct: 67  DGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRVTPLVDSYRRQYPKVRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L    +D+     D  +     +  + +LI   L+   +   AAP Y++    P    +L
Sbjct: 127 LTEGPLDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAPHRPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I            F         +    +    VNS   +    + G+GI++LP+
Sbjct: 187 VRHACIALPADQHSSTWRFVDPDHFTHVVSLQPV--YTVNSASMVRAATLAGTGISVLPE 244

Query: 247 YIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
             + D   +  LVRI+ D     P   +   YP       + ++F  
Sbjct: 245 SYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVE 291


>gi|83719799|ref|YP_441949.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167580797|ref|ZP_02373671.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167618900|ref|ZP_02387531.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257138123|ref|ZP_05586385.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83653624|gb|ABC37687.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 326

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  ++ +  +P G LR+A +  L    +   +  +   YP +++QL 
Sbjct: 67  DGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L    +D+     D  +     +  + +LI   L+   +   AAP Y++    P    +L
Sbjct: 127 LTEGQLDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAPHRPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I            F         +    +    VNS   +    + G+GI++LP+
Sbjct: 187 IRHACIALPAGQHASTWRFVDPDHFTHVVSLQPV--YTVNSASMVRAATLAGTGISVLPE 244

Query: 247 YIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
             + D   +  LVRI+ D     P   +   YP       + ++F  
Sbjct: 245 SYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVE 291


>gi|218509090|ref|ZP_03506968.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 298

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 119/296 (40%), Gaps = 10/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + SF  A E+L +++S++S+ +  LE  + + L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARSFRLAGERLGVTRSAVSQALQRLEDRLAVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G            ++      +++   +PSG LRI  +      L    L  F+   P
Sbjct: 61  EAGEVFFAAVRPSVRQVRDAMQTVRDMQARPSGLLRITVSSIAESFLSGTLLAGFMQACP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++ + + + + DI  +  D A+RL + I+   +           A A+  YL+    P
Sbjct: 121 EIKLDITVTDDEFDIVENGFDAAVRLGEVIEQDMIAVSVSEPQRQCAAASTAYLERHGGP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL  H  I +          +      +R         +  N    +++    G+G
Sbjct: 181 RHPGELRDHACIGWRPRPDTAPYRWE-FTENNRDFDVAVDPAVTTNDMGMMIRLACAGAG 239

Query: 241 IALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I      +V+      D   LV ++ED   P    Y  YP   +   KL+A    I
Sbjct: 240 ITFG---MVETFQPYFDRGELVPLLEDFCPPFPGFYLYYPRRERQPLKLRALVEHI 292


>gi|187921288|ref|YP_001890320.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719726|gb|ACD20949.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 299

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 123/297 (41%), Gaps = 9/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  VAR  SF+ AA +L +SQS  SR +S +E E+G  L  R  R +  TE 
Sbjct: 1   MDINALRIFCRVARLQSFSAAARELSISQSQASRAVSDIEAELGTLLLARTTRAVIPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+        V  +L+     +++   +  G LR+      G   +   L  F   +P +
Sbjct: 61  GADYLIRVEAVLDQLDDAGQSVRQ--DELRGTLRVGMPTSAGVREVIPRLPRFAERHPLL 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I ++LD++  D+  D  D AIR+   +  S+   R L +      A+P YL  C  PLS
Sbjct: 119 RIDVVLDDRRQDLVRDAVDVAIRIG-TLPDSNATARLLTSYARMIVASPAYLARCGTPLS 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  H ++            F           EP IS    +     +     G GI 
Sbjct: 178 PDALVGHRIVYGPAATVSTAWTFTRKGITSNVPIEPNIS---FSDNEGAVAAVKAGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            L  +  +   +  +LV I+ D       V+  +P         +AF NF+  +  D
Sbjct: 235 SLGYWACREELEEGSLVPILTDWSMVGTKVHAYFPLGRATRTAARAFINFLLDEFSD 291


>gi|71065615|ref|YP_264342.1| LysR family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71038600|gb|AAZ18908.1| putative transcriptional regulatory protein LysR family
           [Psychrobacter arcticus 273-4]
          Length = 299

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 132/286 (46%), Gaps = 4/286 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + VF  V   GSF+ +A +L ++ S++S+QI  LE  +G+ L +R  R L+LT
Sbjct: 1   MLDNLRGMAVFASVVGHGSFSGSARELGITTSAVSQQIRSLENTLGVVLLHRSTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    +V    E  +I++ +   + +G LRIATT +LG N +   L  ++  + 
Sbjct: 61  EAGASFYEAAKDVVSAAEQGRIKVNQLRDELAGSLRIATTPELGVNHILPALSTWMSAHD 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I    DN  ID+  +  D A+R+   I  S+L    L  +     A+P YL+  ++ 
Sbjct: 121 DLSITYFADNNYIDMIDERIDIAVRMSPNINDSTLSNHPLSDVRQMLVASPQYLRQHKKI 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L  H LI    +      +     T  +       S +  N+    M     G G
Sbjct: 181 ETPKDLADHQLICIDIMKDANNVELTQTET-GKKTRIKMTSRIHTNNVFMAMTIAKEGHG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           I  + +  VK   ++ NLV ++     PSF +Y       +   K+
Sbjct: 240 ILRMMEMDVKKELESGNLVEVLTGYQMPSFVLYAVTLNREQQPAKI 285


>gi|238788576|ref|ZP_04632369.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC
           33641]
 gi|238723489|gb|EEQ15136.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC
           33641]
          Length = 307

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  +  F  VAR G+FT AA QL +SQS++S  I  LE ++GI+L  R  R ++LTE G
Sbjct: 5   NYSYITAFLAVAREGNFTRAAAQLGVSQSALSHSIRTLEAKLGIRLLTRTTRSVSLTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +  +  + ++E       E   KPSG +RI  T    + +L   L++ +  YPD++
Sbjct: 65  EHLFKNLAPRFEEIEMELAAATEFRDKPSGTIRITATDYAIRTVLWPKLQKLVPEYPDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+D    DI  +  D  IR+   + +  +  R    I      A  Y KN   P + 
Sbjct: 125 LEIIIDYSLADIVAERYDIGIRMGDQVANGMVAVRISPDIRFVIVGASEYFKNHSRPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL  HN +     +P     + W    +    + R+   L  NS   I+   + G+GIA
Sbjct: 185 QELTTHNCMNL--RLPTRGGLYLWELEKEGQKLQVRVEGQLIFNSIYEILNATLSGAGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +P+ +   +    +L  +++D       ++  YP   + +  L      + L+++
Sbjct: 243 FMPENLAAPHVASGHLQYVLQDWYPTFPGIHAYYPSIRQPSRALALVIETLRLRSQ 298


>gi|71276035|ref|ZP_00652316.1| regulatory protein, LysR:LysR, substrate-binding [Xylella
           fastidiosa Dixon]
 gi|71899456|ref|ZP_00681614.1| regulatory protein, LysR:LysR, substrate-binding [Xylella
           fastidiosa Ann-1]
 gi|170729682|ref|YP_001775115.1| LysR family transcriptional regulator [Xylella fastidiosa M12]
 gi|71163118|gb|EAO12839.1| regulatory protein, LysR:LysR, substrate-binding [Xylella
           fastidiosa Dixon]
 gi|71730769|gb|EAO32842.1| regulatory protein, LysR:LysR, substrate-binding [Xylella
           fastidiosa Ann-1]
 gi|167964475|gb|ACA11485.1| transcriptional regulator (LysR family) [Xylella fastidiosa M12]
          Length = 301

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 137/300 (45%), Gaps = 5/300 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D +++F  V  +GSF  A E+L L++S+I + I+ LE  +G++LF R  R  +LT
Sbjct: 1   MQNMFDGVQLFVEVVEAGSFAKAGERLSLTRSTIGKAIARLEMRLGVQLFQRTTRVQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +        +L   +  L++   + +G+L ++  +  G++ +   L+ +   +P
Sbjct: 61  EDGQQYYERCLRAIKELRAGEAMLEQGRREVAGRLHVSLPVLFGRHCVAPILRTYAREHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   +  +D+  D  D A+R       ++L  R+L        A+P YL    +P
Sbjct: 121 QLELELNFSDHHVDLIADGFDLAVRNGPLGNGTTLRARRLGNQRKILCASPTYLAARGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H+L+T+     K    +         +  P  S L+ N    I    V G G
Sbjct: 181 HTLADLADHDLLTYWRNDRKMA--WTLPDATGALVDIPVTSRLRCNDLEVIADTAVDGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +A LP +++ +      L+ I  D  +     +  +P A     + +   N +  +   +
Sbjct: 239 VAWLPYWLLMERMQRGELIGIWGDRPSAVMECHVVWPAAQHVPLRSRLAINLLAAELPKY 298


>gi|326386032|ref|ZP_08207656.1| transcriptional regulator, LysR family [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209257|gb|EGD60050.1| transcriptional regulator, LysR family [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 310

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 127/289 (43%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D+LR F  VAR  SFT AA QL +SQ  +SR I+ LE  +G++L  R  R +  T  G
Sbjct: 5   DHDQLRAFLAVARERSFTRAAAQLGMSQPVLSRTIAALEARLGVRLLNRTTRSVAPTLAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  +  +      L ES  +P+G +R+    D  + ++   L   L  YPDI+
Sbjct: 65  ERLACGIAPHFEAIAGELAALSESFTRPAGLVRLTADEDAAEQVVWPRLARILPAYPDIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++DN   DI     D  IR    I+   +       + M   AAP Y+     P   
Sbjct: 125 VEIVVDNGLTDIVAAGLDAGIRSGDIIERDMIAVPIGPDLTMTMVAAPSYMAGRTPPARP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q+L +H  I     +P     + W           R++  +  N+   ++Q  + G GIA
Sbjct: 185 QDLTRHRCINI--RLPTHGAVYAWELGQGGRETRVRVAGQVTFNTARLVLQAALDGFGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP   V     +  LV +M D   P    +  YP   + +  L+   +
Sbjct: 243 FLPAGRVAPHLADGTLVPLMTDWSEPYPGYHLYYPGHRQVSPALRVLID 291


>gi|218460962|ref|ZP_03501053.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Kim 5]
          Length = 298

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 121/301 (40%), Gaps = 10/301 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA + SF  A E+L +++S++S+ +  LE  +G+ L  R  R ++LT
Sbjct: 1   MVDDLEGISVFLAVAEARSFRLAGERLGVTRSAVSQSLQRLEDRLGVALVQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G            ++      +++   +PSG LRI  +      L    L  F+   P
Sbjct: 61  EAGEVFFDAVRPSVRQVRDAMQTVRDMQARPSGLLRITVSSIAESFLSGTLLAGFIEACP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ + + +++ DI     D  +RL + I+   +              +P Y+K    P
Sbjct: 121 DVKLDITITDEEFDIVEAGFDAGVRLGEVIEQDMIAIAVSQEQRQCPAVSPAYIKRHSRP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  I +          +      +R         +  N    +++    G+G
Sbjct: 181 RHPRDLQSHACIGWRPRPDTAPYRWE-FTENNRDFDVAVDPAVTTNDMSMMIRLACAGAG 239

Query: 241 IALLPDYIVK------DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I      +V+      D   LV ++ED   P    Y  YP   +   KL+A    I   A
Sbjct: 240 ITFG---MVETFQPYFDRGELVPLLEDFCPPFPGFYLYYPRRERQPLKLRALVEHIRKSA 296

Query: 295 R 295
           R
Sbjct: 297 R 297


>gi|148653255|ref|YP_001280348.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148572339|gb|ABQ94398.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1]
          Length = 301

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 4/286 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + VF  V   GSF+ AA QL ++ S++S+QI  LE ++G+ L +R  R L+LT
Sbjct: 2   MLDNLRGMAVFASVVGHGSFSGAARQLGITTSAVSQQIRSLEKDLGVVLLHRSTRKLSLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    +V    +  +I++ +   + +G LRIATT +LG N +   L  ++  + 
Sbjct: 62  EAGASFYESAKDVVTAADQGRIKVNQLRDELAGSLRIATTPELGVNHILPALSTWMSAHD 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I  + DN  ID+  + AD AIR+   I+ SS+    L  +     A+PHYL+   + 
Sbjct: 122 DLSIYFLADNHYIDMIDERADIAIRMSPQIKDSSVATYPLAEVKQMLVASPHYLRQHEKI 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H LI+   +      DF+ + T  +       S +Q N+          G G
Sbjct: 182 TKPKDLANHQLISIDLMKDPNTLDFSSIET-GKKNRVKITSRIQTNNVFLATTLAKEGHG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           +  +    V+    +  LV ++ +   P F +Y    +  +   K+
Sbjct: 241 LVRVMSLDVQKELASGELVEVIPEYSLPHFVLYAVTLDREQQPAKI 286


>gi|330816505|ref|YP_004360210.1| putative transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327368898|gb|AEA60254.1| putative transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 305

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 126/294 (42%), Gaps = 10/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++  F  VA +GSF+ AA +L  + S++SR I+ LE  +G +L  R  R L L+++G +
Sbjct: 11  DEMATFVKVAEAGSFSEAARRLGSTPSAVSRSIARLERALGTRLILRSTRRLRLSDEGLE 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R   E+    +      +  S +P+  +RI+    LG+ L+  ++ +FL  +P + + 
Sbjct: 71  ALRHAGELVAAAKAVMSLAERRSAEPADTIRISAPRALGRFLIHPSIPDFLAAHPAVDVV 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD++ +D   D  D   R+        L+ RKL+ I     A P YL     P   +E
Sbjct: 131 LKLDDRQVDPVDDQVDIVFRITDD-PPPGLVGRKLMRIEHVVCATPAYLARHGRPAHPRE 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  IT  +        F         +          N     ++  +   GI  +P
Sbjct: 190 LAAHGCITLSEDPVDTRWRFE---RGGGTVAVDVRGRYVANHSGVRLEAVLADLGIGGVP 246

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTV---YFCYPEALKNTGKLKAFRNFIFLK 293
            ++     ++  + R++ D +  +      +     +     K+++F  FI  +
Sbjct: 247 RFVAAAALEDGRVERVLPDWLFKTNYYGDAWAFCSPSRHTAPKIRSFLAFIAGR 300


>gi|300714749|ref|YP_003739552.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299060585|emb|CAX57692.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 300

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 119/291 (40%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L +F  +AR  +F  AA++ +++ S++S  ++ LE  +G++L  R  R ++LT+ G
Sbjct: 6   TLQELEIFTAIARHLNFGKAAKERNVTPSTLSHTMTNLEQRIGVRLLNRTTRSVSLTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        L     EL    V P G LR+          LQ  L  F   YPDI 
Sbjct: 66  KAFLLRIEPAMLDLSLAVDELNHWRVDPRGTLRLNMPRSAEALYLQSLLLPFRQQYPDIA 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLS 182
           +++   +  ++I     D  +R  + I    ++       +     A+P Y+     P  
Sbjct: 126 LEVTTSDSLVNIVEGGFDAGVRFGEAIPQD-MVAIPFGRKLRGAVIASPAYIALHGVPKH 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QEL     I      P  M      +   +P+    +  L +++   +      G+G+A
Sbjct: 185 PQELINFPCI--QRRFPSGMNYKWEFSDAGKPLAVAVVGSLTLDNDFVMADAASAGAGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +   +V+   DN  LV ++ D   P+ + +  YP     +  L+ F  ++
Sbjct: 243 FVFKELVQNRLDNGELVEVLADFAAPAESFWLYYPGRKYTSTPLRCFIEWL 293


>gi|218532830|ref|YP_002423646.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218525133|gb|ACK85718.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 301

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 130/297 (43%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA SG F  AA  L +S ++++R ++ LE  +G +LF R  R + LTE
Sbjct: 1   MDRLQGMRVFVRVAESGGFAGAARALSMSPAAVTRAVAALEALIGARLFIRTTRSVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++   +     S+  P+G L +   +  G+  +   + ++L  +P 
Sbjct: 61  AGGRYLEDCRRILAEIAEAEAAAAGSTATPTGILTLTAPVQFGRLYVLPVVTDYLARHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ +  ++ +++  +  D  +R+   +  S L   ++ ++     AAP YL+    P 
Sbjct: 121 VAVRALFLDRIVNLVEEGIDVGVRIGH-LADSGLTATRVGSVRRVVCAAPSYLERHGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H +I  G   P  + +  W    +        + L  N+  + +   + G GI
Sbjct: 180 TPRDLRDHAVI--GASNPGALPE--WRFGPEGRTTVGVHARLVCNTVDASLAAALDGWGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L  Y V        L  ++ D   P   ++   PE  +   K +AF +    + R
Sbjct: 236 ARLLSYQVASAVAEGRLRILLTDDEAPPVPIHVVSPEGRRAPAKTRAFVDLAAARLR 292


>gi|91794244|ref|YP_563895.1| LysR, substrate-binding [Shewanella denitrificans OS217]
 gi|91716246|gb|ABE56172.1| transcriptional regulator [Shewanella denitrificans OS217]
          Length = 298

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 141/300 (47%), Gaps = 14/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA   SFT AAEQL+LS+  +SR +  LE  + ++L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFVEVADCASFTQAAEQLNLSRLQVSRHVKELEQWLNLRLLHRTTRSVSLTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +      E+   +   Q   Q+ + K  G +R+A+ I LGQ+ L   + EF+ L+P+
Sbjct: 61  EGEETLSYCQEILSGVAQMQSRAQQHNTKLVGTIRLASPIGLGQHKLFDVVNEFIALHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ Q +L +    +  +  D A+R        +LI R+L+ I     AAP YL++    +
Sbjct: 121 VKFQFVLADSLAAMVGERVDIALRYTHQ-PDDNLIARRLMQIDSVICAAPEYLEHHEPII 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I ++ +HN +            ++WL              LQ N    +++  +L  G+
Sbjct: 180 NIADIGRHNCLVHTSQS-----QWHWLIDNQHQQLNVG-GNLQANDMGVLIKAALLAKGL 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             LP  +      +  L+ ++   ++P   ++  Y         ++AF +FI   A+ W+
Sbjct: 234 VCLPADLANPYLADGQLIEVLPQYVSPGKPLWAVYLSRSYQLLHVRAFIDFI---AQKWQ 290


>gi|163732779|ref|ZP_02140224.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
 gi|161394139|gb|EDQ18463.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
          Length = 309

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 134/299 (44%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  + ++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEDHLSVRLFQRTTRSLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +    E+   +E  + ++ + +  P G L +A  + LG+ L+   +  FL  YP
Sbjct: 60  EQGKAFYGGACEILSSVENAEAQVVDITENPKGALYVAAPLGLGRRLIAPQVPAFLAAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L L ++ +D++ +  D A  L +P   S+L  RK+  +     AAP Y+     P
Sbjct: 120 EVSIRLRLTDRKVDLTTEGLDLAFFLGQP-ADSTLRIRKIADVPRILCAAPSYIAARGNP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVL 237
            S  EL  D+H  +      P   E F W    +  + + R+    + +    +  + + 
Sbjct: 179 TSGDELVADRHECLNL--RFPGATE-FQWRLRTEEGLKKYRVTGRYESDDGDVLTDWALA 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI L P + + D+     LV +          +   +        K + F +F+  +
Sbjct: 236 GHGITLKPVFEISDHLKAGRLVPVAAKTPPEPSQMACLFTHRKGQDPKTRLFMDFVIER 294


>gi|148257360|ref|YP_001241945.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146409533|gb|ABQ38039.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
          Length = 307

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA  GS +  A +L + QS+I+R +  LE  VG+ L  R  R +TLT++GS+ 
Sbjct: 10  HMRSFVRVAERGSLSAVARELGVGQSTITRHLHELEETVGVPLLSRTTRRVTLTDEGSRY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++   +E    E + +   PSG +RI+ T   G   +   +  F   YPDI + L
Sbjct: 70  YTNCVQILRLIEQAGDEARGTRGAPSGIIRISCTAAFGILHITRLIFAFQDRYPDIAVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ID+  D  D A+RL  P+  SSL  R L   H    A+P YL     P + Q+L
Sbjct: 130 NLTDERIDLVRDGVDIALRLA-PLSDSSLKLRSLGHSHRLLVASPDYLARRGTPRTPQDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ I   ++     E    L         P     + +  L + +  + G GI     
Sbjct: 189 IGHDGIRMTNVAGS--ETLVVLGPDGERHEVPFRGSFRTDHGLGVREAVLSGRGIGGSHA 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++V D      L  I+ D   PS  +            +++   +++  + 
Sbjct: 247 WLVDDLIAAGRLTVILPDHRLPSAPLNMLIVPERAGIARVRLMIDYLAAEV 297


>gi|289675293|ref|ZP_06496183.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
          Length = 264

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 11/262 (4%)

Query: 34  ISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSG 93
           +SRQI  LE  +  +L YR  R + LTE G         +    E     + + + +P G
Sbjct: 3   VSRQIVRLEERLQTRLLYRSTRKVALTEAGQTFLHHCQRLQDGREEALRAVGDLASEPKG 62

Query: 94  KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSS 153
            LR+   +  G+  +   +  F+ LYP +++ + L N+ +D+  +  D AIRL + +Q S
Sbjct: 63  LLRMTCAVAYGERFITPLVTRFMDLYPHLRVDIELSNETLDLVHEGMDLAIRLGR-LQDS 121

Query: 154 SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDR 213
            L+  +L    M+  A+P Y++    P S+ EL++HN +  G        D   L    R
Sbjct: 122 RLVATRLAPRQMYLCASPSYIERYGRPHSLSELNRHNCLIGGS-------DTWQLQQNGR 174

Query: 214 PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVY 270
              +      + NS  +++   + G G+  LPDY V+   ++  LV ++E    P+  V+
Sbjct: 175 EFSQRVQGNWRCNSGQAVLDAALHGVGLCQLPDYYVQKHLNDGTLVSLLEAHQPPNTAVW 234

Query: 271 FCYPEALKNTGKLKAFRNFIFL 292
             YP+    + K++   +++  
Sbjct: 235 GLYPQQRHLSPKVRKLVDYLKE 256


>gi|254511322|ref|ZP_05123389.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221535033|gb|EEE38021.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 298

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 130/298 (43%), Gaps = 9/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  VA + SF   A ++ LS  S +R ++ LET +G +LF R  R + L E
Sbjct: 1   MDRLQSLEVFIAVAETESFAEGARRMGLSAPSATRGVNALETRLGTRLFDRTTRRVRLNE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +L+        ++  P G+LR+  + + G+  +   L EFL  +PD
Sbjct: 61  VGKMYLEDARLIVAQLQAADDAAAGATTNPVGELRLTCSNEFGRIYVTPILTEFLDTFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   +++ ++ +++  +  D A+R+   + SS L   ++ ++      AP YL+    P 
Sbjct: 121 VSADVVMVDRVVNLIEEGFDVAVRIGS-LPSSGLTAVRVGSVRRVVCGAPAYLERFGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H ++    + P       W    D+         L+VNS  +     + G G+
Sbjct: 180 TPADLTGHQIVAAAPVSPTT----EWRFGRDQSNIVRLKPRLRVNSIAAARAAVIQGWGL 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +  Y V     +  L  I+E        ++  + E  +   K++AF +F   + RD
Sbjct: 236 TRVLSYQVGPELQDGRLQSILEGFEPEPLPIHLVFVEGRRAPAKVRAFVDFAKERLRD 293


>gi|330818506|ref|YP_004362211.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327370899|gb|AEA62255.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 310

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 10/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R+F  +    SFT AA    + +S+ ++ I  +E  +G++L  R  R +T T 
Sbjct: 1   MDSIDAMRLFVRIVERRSFTAAANDTDIPRSTATQVIRQMEDRLGVRLLQRTTRTVTPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   L   +  L     +P G LR+     L ++ L   L EF   +P+
Sbjct: 61  DGEAYYRSCMSILDDLHEAEAAL--GGKQPRGMLRVDVQGTLARHFLLPALPEFFRRFPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI +   ++ I++  +  DC +R    +Q + L+ RK+ T+     AAP YL+    P 
Sbjct: 119 LQITMSESDRFINLVEEGVDCVLRYG-VVQDTELVARKVATLERLTVAAPAYLEVHGRPD 177

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           SI+ L+   H ++    L    +    +++  D          L V    S     +LG 
Sbjct: 178 SIEALETGTHRMVGIRTLSTGRITPLEFVSEGDLR-HVVLPDTLSVTGPESYRDSTLLGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           GI+ +P + ++ +     LV ++E    PS  V+  YP   + + +++AF ++
Sbjct: 237 GISQMPRFHIEADLASGRLVTLLESTPPPSMPVWLLYPHRRQLSPRVRAFLDW 289


>gi|91224510|ref|ZP_01259772.1| hypothetical transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91190852|gb|EAS77119.1| hypothetical transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 309

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 153/299 (51%), Gaps = 10/299 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +KL +   V+++GSF  AA+ +++ +S +S+ I  LE  +G++L  R  R L+LT+
Sbjct: 1   MDLANKLHLLLEVSKAGSFAKAADGMNIDRSVLSKHIKQLEEHLGVRLLNRTTRSLSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++     ++   L+ TQ   +    +PSGK+RI+++   G+  LQ ++++FL  YP 
Sbjct: 61  VGKQIVEKADQISQLLDDTQQIAENFQTEPSGKVRISSSTLFGKLYLQPSIEKFLHKYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L+LD+  +D+     D A R+  P++ SS++ RKL        A+ + ++    P 
Sbjct: 121 ASVELMLDDLHVDVIRSNFDIAFRIG-PMRDSSMVARKLAKNTTAIIASRNLIEKHGNPE 179

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  EL K   I +  G+ I   ++ ++  A  D     P      VN    I++    G 
Sbjct: 180 TPDELVKLPFIIYSNGNFIVDKLKFYD-KAKSDGLDTYPISGSYMVNEAELIIESVKSGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKA 294
           G AL+  +++    ++ NLV+++ +  T  F  +Y  Y    + +  ++AF + +  + 
Sbjct: 239 GAALIGQFMLPNNLESSNLVQLLPEYETQDFGDIYAMY-SHRQQSPLVRAFIDIVQEEV 296


>gi|302186626|ref|ZP_07263299.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 306

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E+  G +L +R  R L LT  G     
Sbjct: 16  RVFIAINERGSLIAAAEALDISRAMVTRYLAQMESWAGARLLHRTTRKLGLTAPGQVTLL 75

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L   +L   +  +L  YP     L++
Sbjct: 76  RCQQLIELADAVPLAADTHVDEPRGMLRIACSQSLALAVLAPAVTAYLQRYPGTSADLLI 135

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L        A+P YL     P+  QEL  
Sbjct: 136 GNEAVDLVSERIDLAIRITNQL-DPNVIARPLGLCASVVCASPAYLAVHGTPIRPQELLA 194

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E          P+  P    L  N  + +++  V G+GI+L P + 
Sbjct: 195 HNCLTYSYFGKSLWE----FIHQQLPLSVPVGGNLSANDSVVLLEAAVAGAGISLQPVHS 250

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  L+ +M +    +  ++  Y      +  L+ F  F+  
Sbjct: 251 AAPLMASGKLIALMPEYQPRALGIHAIYTSRHHQSATLRTFLAFLTE 297


>gi|172061445|ref|YP_001809097.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993962|gb|ACB64881.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 309

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT 
Sbjct: 1   MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  + +      +       G+L +     + + ++   L      +P 
Sbjct: 61  DGALLLERGRRLLAEADELDRLFRRRDRDVVGRLNVDAPSRIARRVIAPALPSLFRRHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P 
Sbjct: 121 LQLSLGSTDRTIDLVQEGVDCAIRVGR-LADSSLVVRPLGRFALINCASPDYLRECGVPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               L   H  I +    P    +  W    D       + S + VN+  + +  C+ G 
Sbjct: 180 HPDALAHGHWAIGYAS--PTTGRELGWEYCADGGQHTLALPSRVIVNNAETYIASCIAGM 237

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +P + V    D+  LV +M         V   YP     + +L AF  +
Sbjct: 238 GLIQIPRFDVVHLLDSGALVEVMPGHRAAPMDVSAVYPHRRHRSRRLNAFIEW 290


>gi|254787426|ref|YP_003074855.1| LysR family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237683485|gb|ACR10749.1| transcriptional regulator, LysR family [Teredinibacter turnerae
           T7901]
          Length = 342

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 132/299 (44%), Gaps = 10/299 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D    ++VF  V     F  A+ QL LS  +++R I+ LE+ +G+KL +R  R +  T
Sbjct: 43  AMDQLHLMQVFVAVVDEQGFAAASRQLRLSPPAVTRAIATLESRLGVKLLHRTTRHVRPT 102

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +     +  ++E      Q  + +P G+L I   +  GQ  +   + E+L  Y 
Sbjct: 103 DAGVHYYDDAHRILREVELANESAQGVNSEPRGRLSITAPVLFGQKYVLPGVVEYLKRYR 162

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              +  +  ++ +++  +  D  IR+ + +  SS+  R +  +++   A+P YLK    P
Sbjct: 163 HTSVDAVFLDRVVNLLEEGFDVGIRIGE-LADSSMRARHVGNVNLILVASPAYLKAEGIP 221

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +  +L  H LI+            NW    +      RI+  LQV +  + +     G 
Sbjct: 222 QTPDDLKNHTLISSNS----NNFTQNWHFRCEGKNLSLRITPRLQVTTNQAAIDAAAAGL 277

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI  +  Y V D   +  L  I++   +    ++  + E   ++ K++AF   +  + R
Sbjct: 278 GITRVISYQVADYLADGRLKCILDPFCSQPLPIHIVHREDRLSSHKVRAFIELMQERLR 336


>gi|254508088|ref|ZP_05120215.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219549055|gb|EED26053.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 307

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L V   VA   S T AA  L +  ++ S  +  +E  +G +LF R  R L L+  
Sbjct: 1   MLLEDLHVVLKVAEMRSITRAATALDMRTATASAAVKRVEASLGSELFIRTTRQLRLSSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    L   +  ++E   +  G++RI+ + DLG+N++   L EFL  +P +
Sbjct: 61  GERYIPECEKALELLSQAKQLMREEQGEIDGEVRISLSSDLGRNVVVPWLDEFLDAHPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++  L + ++D+  D  D A+R   P   S+L   K+  I     A+P YL    EP  
Sbjct: 121 SLRTHLSDSNVDLYRDGVDIALRYGSP-TDSNLYGFKICDIRKVLCASPEYLAKHGEPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  HN + +   +   ++D        + I          N    + ++CV G GIA
Sbjct: 180 PDDLKHHNGLFY--QLRDVLKDEWEFVKDGQEIKVKMSGNRASNDADLVRRWCVAGKGIA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +     + ++    N+V IM D    S  ++   P     T  ++  R+    K +
Sbjct: 238 IKSYLDMSNDLLAGNVVEIMSDYQPTSSELWLVCPSRRSITPTVRLLRDMFREKTQ 293


>gi|170023270|ref|YP_001719775.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|169749804|gb|ACA67322.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
          Length = 302

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++  +R ++ +E   G +L +R  R L+LT  G     
Sbjct: 8   EVFVAIVDRGSMIAAAESLEMSRAMATRYLAQMEQWAGARLLHRTTRKLSLTHAGEATLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +   + S +  G LRI+ +  LGQ+ L   + ++L  YP + + L +
Sbjct: 68  RCRRMLEFAQDMDLAEGQESEELRGLLRISCSQSLGQSALAIAVADYLRRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ I++  +  D A+R+   +   +LI R L T +    A+P YL     P S Q+L  
Sbjct: 128 NNRAINLVEERIDLALRITNEL-DPNLIARPLSTCYSVVCASPAYLSVSGIPESPQDLTV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E                   L  N  + ++   + G+GI L P Y 
Sbjct: 187 HNCLTYSYF----GESLWHFDQSGVKSSVAVSGNLSANESVVLLSGALEGAGITLQPIYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V        L++++ D    +  +Y  Y    +    L+   +F+  
Sbjct: 243 VAPYIARGELIKLLPDYQPQAMGIYGVYASRRQMPTTLRTMLDFLVE 289


>gi|51597362|ref|YP_071553.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 32953]
 gi|186896470|ref|YP_001873582.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590644|emb|CAH22286.1| LysR-family transcriptional regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699496|gb|ACC90125.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
          Length = 302

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++  +R ++ +E   G +L +R  R L+LT  G     
Sbjct: 8   EVFVAIVDRGSMIAAAESLEMSRAMATRYLAQMEQWAGARLLHRTTRKLSLTHAGEATLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +   + S +  G LRI+ +  LGQ+ L   + ++L  YP + + L +
Sbjct: 68  RCRRMLEFAQDMDLAEGQESEELRGLLRISCSQSLGQSALAIAVADYLRRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ I++  +  D A+R+   +   +LI R L T +    A+P YL     P S Q+L  
Sbjct: 128 NNRAINLVEERIDLALRITNEL-DPNLIARPLSTCYSVVCASPAYLSVSGIPESPQDLTV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E                   L  N  + ++   + G+GI L P Y 
Sbjct: 187 HNCLTYSYF----GESLWHFDQSGVKSSVAVSGNLSANESVVLLSGALEGAGITLQPIYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V        L++++ D    +  +Y  Y    +    L+   +F+  
Sbjct: 243 VAPYIARGELIKLLPDYQPQAMGIYGVYASRRQMPTTLRTMLDFLVE 289


>gi|332717296|ref|YP_004444762.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325063981|gb|ADY67671.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 298

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 9/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A  GSF  AA +L +S S+I + ++ LE  + ++LF+R  R LTLT +G+
Sbjct: 4   LGALNAFVQTADCGSFAGAAARLGVSGSAIGKAVARLEERLAVRLFHRSTRSLTLTAEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   ++ ++E  ++EL +    P G+LR++    L   L+   +  F+  YP+I++
Sbjct: 64  LFLDRCRRIFSEIEAAELELSQIRQAPRGRLRVSLP--LIGMLMMPAVMAFMRAYPEIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ +D+  +  D  +R  +  + S L+ R+          +P YL     P +  
Sbjct: 122 DLDFTDRLVDVIDEGFDAVVRTGEA-RDSRLMMRRAGAFSHRIVGSPDYLAARGVPSTPD 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIAL 243
           +L  H         P   +   W    D    E  +    V ++    +     G G+A 
Sbjct: 181 DLLGHAC--HHHKYPSTGKLERWPMVADGAALELVLPVTSVASTLEPQICLAEGGFGLAC 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP + +++      LV ++ED +      +  +P     + K+ AF +F+  
Sbjct: 239 LPQFAIREQLRRGRLVSVLEDYMQEVGAFHILWPANRHPSPKVSAFVSFMAE 290


>gi|152970270|ref|YP_001335379.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955119|gb|ABR77149.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 288

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 123/287 (42%), Gaps = 8/287 (2%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            +AR  SF+ AA +L +S S++S  + GLET +G++L  R  + +T T  G +L +   +
Sbjct: 2   AIARHRSFSRAAIELGVSASALSHALKGLETRLGVRLLNRTTKSVTPTAAGEELVQSVLQ 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
            +  +E     L      P+G++RI   ++    LL   +  F+  YPDI+I ++  N+ 
Sbjct: 62  PFDTIEGALESLNRYRNTPTGRIRINAAVEAANLLLAPVMPAFMDRYPDIEIDIVASNRM 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           +D++    D  IR    +    + +R    I     A+P YL+    P    +L  H  I
Sbjct: 122 VDVTDAGFDAGIRYGGTVPEDMVARRLSADIRWVIAASPDYLERYGTPEHPDDLLHHRCI 181

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
           +      +    + W    D    +  +   + VN   + +   + G+G+   P+ +V  
Sbjct: 182 SNRLGDDRV---YRWELARDGETYQMTVPGSVTVNHAETGLVAVLGGAGLMYFPEPLVAP 238

Query: 252 ---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              +  L  ++ +        +  Y    +    L+    FI  +AR
Sbjct: 239 YVKDGRLRLVLTEWSPLEEGFHIYYSSRRQLPTGLRLLIEFI-QEAR 284


>gi|293604952|ref|ZP_06687349.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292816780|gb|EFF75864.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 301

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 128/294 (43%), Gaps = 14/294 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA++ SF+ AA  L + +S++SRQ++ LE  VG++L  R  R + LT+ G    
Sbjct: 1   MELFVEVAKTRSFSRAAATLGVPKSTLSRQVAELEKSVGLRLLSRTTRKVELTDAGRLYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +    ELQ+    P+G LR+    D G + L  +  EF   YPD+   L 
Sbjct: 61  ERCQRIVAEAQIAHEELQKLVDTPAGPLRVNMPADFGTDFLAESFMEFSRRYPDVTFFLD 120

Query: 128 LDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L N D         D +I +   +  S+ I R L  +  H YA+  YL    EP    +L
Sbjct: 121 LANPDHASRVFQTCDISIEIGD-LPDSTQIARLLGMLPAHLYASHDYLDKHGEPKHPSDL 179

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I F       +  +  L+  D+ I     +   VN      +  +LG+GIA+L  
Sbjct: 180 TRHECIEFRAEGAGRVTRWP-LSNGDQHIEFTPGNRFSVNGVAMARRLAMLGAGIAVL-- 236

Query: 247 YIV------KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             V      + +  L R++ D     F VY    E      K + F  F+  + 
Sbjct: 237 --VGGQTAEQQSGQLRRVLPDWQLGPFPVYAVT-ETRLLPAKTRIFIEFLMERL 287


>gi|257454968|ref|ZP_05620216.1| transcriptional regulator, LysR family [Enhydrobacter aerosaccus
           SK60]
 gi|257447678|gb|EEV22673.1| transcriptional regulator, LysR family [Enhydrobacter aerosaccus
           SK60]
          Length = 299

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 137/286 (47%), Gaps = 4/286 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + VF  V R GSF+ AA++L ++ S++S+QI  LE ++G+ L +R  R L+LT
Sbjct: 1   MLDNLRGMAVFASVVRHGSFSGAAKELGITTSAVSQQIRSLENDMGVVLLHRSTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    +V    E  +I + +   + +G LRIATT +LG N +   L  ++  + 
Sbjct: 61  EAGTSFYESAKDVVAAAEQGRIRVNQLRDELAGNLRIATTPELGVNHILPALSTWISAHD 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I    DN+ +D+  +  D A+R+   +  SSL    L  I     A+PH+L+   + 
Sbjct: 121 DLTIHFEADNQYVDLIEERIDIALRMSPNLNDSSLSAFPLTEIRQLLVASPHFLRQNEKL 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L K N+I    +      D   + T  +       + +Q N+ +        G G
Sbjct: 181 TEPKDLAKLNMIGISLIKDPNQVDMINVET-GKKSRVRMPTRIQTNNIMLATTLAKEGHG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           +A +    ++    N +LV ++     PS+ +Y   P   +   K+
Sbjct: 240 VARIMSLDIQKELANGDLVEVLPGYQLPSYMLYAVTPRHEQQPAKV 285


>gi|148546158|ref|YP_001266260.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148510216|gb|ABQ77076.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 326

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 129/295 (43%), Gaps = 13/295 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F VV  +GSF  A+ +L ++ S++S+Q+S LE  + I+L  R  R L +  +G++++
Sbjct: 18  MAAFAVVVETGSFVDASARLGVTASAVSKQVSKLENALSIRLLERSTRQLKVNAEGAQVY 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+                 P G +R+A    L   +    + EFL  YP + +QLI
Sbjct: 78  SHCKELLESSANIFRFKDRFLESPQGLIRVAVPRSLYV-ICHQLVPEFLERYPSVNVQLI 136

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +  + D   +  D  IR+        L+ RKL  +     A+  YL+    P+   EL 
Sbjct: 137 SNEGEFDFIAEGIDVGIRVTDS-PPLGLVARKLFPVDFVVCASNSYLEKHGRPVHPSELT 195

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
           +H+ I F ++     E  NW  T  + + E  +S   V +S  +++   + G GI+ LP 
Sbjct: 196 EHSCIPFSEVS----EKQNWKFTSAQGVCEVSVSGRYVSDSPEAVLNATLSGLGISCLPV 251

Query: 247 YIVKDNPN---LVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +  +      LV +  +     T     +  +      + K+K   +++  + R
Sbjct: 252 RLAAEAITTNVLVEVFPEWKYVGTLQGMAWILHQPGRHVSQKVKVMVDYLVGELR 306


>gi|18478993|dbj|BAB84544.1| putative temperature-dependent regulator A [Serratia marcescens]
          Length = 303

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ +S LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLGMSVSSISQTVSKLENELQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  ++     +L   +  P+G LRI ++  + QN+L     E +  YP + +
Sbjct: 64  IYYQGCRRMLQEVSEVHEQLYAFNNTPAGTLRIGSSSTMAQNVLANMTAEMMKEYPGLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR    +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLITDGLDLVIRTGA-LQDSSLFSRRLGQMPMVVCAAKSYLIQHGTPQKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +        E  +      R   + R      N   +++++   G+GIA  
Sbjct: 183 DMVNFSWLEYSVRPDSEFELMSPEGITTRISPQGR---FVTNDSSTMIRWLKNGAGIAYA 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +++++     +  + +   +    +Y  Y E  K   K++   N++
Sbjct: 240 PLMWVIEEIKRGEIEILFKSYHSDPRPIYALYTEKDKLPLKVQVCINYL 288


>gi|53716824|ref|YP_104945.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53722987|ref|YP_111972.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76819314|ref|YP_336230.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121598134|ref|YP_990862.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124381640|ref|YP_001025342.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126447296|ref|YP_001077328.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126458518|ref|YP_001076701.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134278423|ref|ZP_01765137.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|166999114|ref|ZP_02264960.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167743854|ref|ZP_02416628.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167821041|ref|ZP_02452721.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167829405|ref|ZP_02460876.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167907797|ref|ZP_02495002.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167916158|ref|ZP_02503249.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|226196916|ref|ZP_03792494.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242313735|ref|ZP_04812752.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254176055|ref|ZP_04882713.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254185893|ref|ZP_04892411.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254263695|ref|ZP_04954560.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254359486|ref|ZP_04975758.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52213401|emb|CAH39444.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|52422794|gb|AAU46364.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76583787|gb|ABA53261.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|121225932|gb|ABM49463.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|126232286|gb|ABN95699.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126240150|gb|ABO03262.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134250207|gb|EBA50287.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|148028673|gb|EDK86633.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157933579|gb|EDO89249.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160697097|gb|EDP87067.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|225930899|gb|EEH26908.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242136974|gb|EES23377.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243064677|gb|EES46863.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254214697|gb|EET04082.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|261826422|gb|ABN00536.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 301

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE EVG  L  R  R L +TE
Sbjct: 6   DVNLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEVGASLVVRTTRRLNVTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    ET    +   +    G LR++  +D G  ++   L      +P 
Sbjct: 66  AGRAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPA 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P 
Sbjct: 126 LEIELQCDDRVVDLVRDNLDVAIRLGR-LADSNHRAAKLGGFERWLVASPAFVARHGAPA 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L     +    +    +E  N  A  +R     R      N+  +     + G G 
Sbjct: 185 SPEALGALPYVMLSTVPRTTLELAN--AHGERASVRCR-RAFASNTATACRAAVLAGGGF 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +   +   D+     LVR++     P   ++  +P A   + K++A  + +  + 
Sbjct: 242 GVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRALIDMLKTRL 297


>gi|301381157|ref|ZP_07229575.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
          Length = 307

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 125/297 (42%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  ++SR+++ LE ++G++L +R  R ++LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAVSRRLAALENDLGVRLVHRTTRSVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    E  +  L+  +   SG LR+      GQ ++   L E +L  P +
Sbjct: 61  GEVFLPHAKTMLQASEAARATLKADAGTASGILRVTAPSVFGQTVIMPLLPELMLENPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI+    D AIR+   I+ S+L+ R L        A+P YL     P  
Sbjct: 121 SIDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCASPDYLMRRGTPTV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L  H  I    +                P+          NS  ++      G G+A
Sbjct: 180 LDYLRHHPCIALHGMPYWS------FTRDGEPVTIRAQGSFSANSVEAVRTASKQGLGLA 233

Query: 243 LLPDYIVKD---NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +L  + ++      +L +I  ED +    ++    P   +   +++ F + +  + +
Sbjct: 234 MLTYWDIQQEIREGSLRQIDFEDALPEQLSITAMLPTRQRVPHRVRLFVDRLEAELQ 290


>gi|307544155|ref|YP_003896634.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307216179|emb|CBV41449.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 316

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 115/290 (39%), Gaps = 5/290 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L  F  +AR+GS T  A +L LS S++S+++  LE  +G+ L  R  R LTLT +G 
Sbjct: 4   LDDLAFFQHLARAGSLTATARELGLSLSAVSKRLKQLEARLGVSLASRTTRRLTLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 + +  +L   +  L +   + SG LRI  T   G+  +      F    P I+ 
Sbjct: 64  LYLSRGATILDELGELEETLGDHRAELSGPLRINATFGFGRQHVAPLFSAFCRRNPRIEG 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L N    +     D  IR+ +P   S L+ R+++       AAP Y+         +
Sbjct: 124 SLELTNFPASLFDQGFDIGIRVGEP-PDSRLVARRILANRRVLCAAPSYVATMPPLRDPR 182

Query: 185 ELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  +   +      +  F      D          +  N    I +    G G+AL
Sbjct: 183 DLPSHPCLVIRENGSDYAVWRFQRRDAPDEERAVKVAGPMASNDGEVIRRLARDGHGVAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D+     LV ++          +  Y +      +++AF  ++
Sbjct: 243 RSWWDVHDDLAAGRLVELLPMWRGVRADFHAVYHQRRHVPLRIRAFIAYL 292


>gi|218680566|ref|ZP_03528463.1| transcriptional regulator, LysR family protein [Rhizobium etli CIAT
           894]
          Length = 271

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 131/273 (47%), Gaps = 6/273 (2%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +L+LS + + R+I  LET+ G+KL  R  R   LTE G +     S V  +LE       
Sbjct: 2   RLNLSPAMVGRRIQALETDYGVKLIERTTRTQRLTEIGVRFLERASRVIDELEQLNDIAG 61

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
             + + SG LRI+    LG   L  ++  F   +P + ++L L ++++D+  +  D AIR
Sbjct: 62  PQNHEISGHLRISGPTTLGVKRLASSIARFANQHPAVSLELSLTDRNVDMISEGYDLAIR 121

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
           +   ++ SSLI RK+ T      A+P YL     P   ++L++H  I   +L+P+  + +
Sbjct: 122 VAH-LRPSSLIARKIGTYRFVCCASPGYLGKNGVPTHPEQLERHRCILSLNLVPR--DQW 178

Query: 206 NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDV 262
           ++     R +     S + +++  ++    V  +GI   P+ +V+++     L  ++ D 
Sbjct: 179 HFEGQDGRVLAAKINSNIGIDNGEAMRVAAVEDAGIVYAPEVMVEEDIAAGRLTEVLVDW 238

Query: 263 ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              S  ++  +P       ++KA   +I    R
Sbjct: 239 DKYSLPIHAVHPSRQFVPRRVKAVIGWIAGDLR 271


>gi|261822864|ref|YP_003260970.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261606877|gb|ACX89363.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 305

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 128/292 (43%), Gaps = 12/292 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L+LT+ G K   
Sbjct: 8   EVFVTIIDRGSMIAAAETLDMSRAMVTRYLAEMETWAGARLLHRTTRKLSLTDAGEKTLV 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+       ++E    +   SG LR++ +  L Q  +   +  FL  +P + I L +
Sbjct: 68  RCREMLALTADMRVEADTGNAMLSGLLRLSCSQSLAQGAIGMAITTFLRHHPRVAIDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L +      A+P YL     P  + +L  
Sbjct: 128 NNRSVNLVEERIDLALRITNEL-DPNLIARPLASCESVLCASPSYLNEHGIPRQLTDLSV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+              +  D     P    L  N  L ++   + G+GIAL P Y 
Sbjct: 187 HNCLTYTYFGKSLWH----FSRDDEKFTIPVSGNLSGNESLVLLSGALEGAGIALQPRYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           V     +  LV ++ +    +  +Y  Y    +    L+   +F+     DW
Sbjct: 243 VTPYLASGQLVALLPEYRPQAMGIYGIYTSRRQMPAALRTLLDFLV----DW 290


>gi|313111304|ref|ZP_07797122.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310883624|gb|EFQ42218.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 311

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 133/299 (44%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E  +  + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +   R 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGHRL 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               ++L+    +  G +          +          R   L V+ ++   +  V G 
Sbjct: 181 -EHPEDLEDLPFL--GAIHNDRKVHATLIGPDGSRYQLEREPRLGVDDFVLRKKAAVAGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ LLP+        + +LVRI+     P  T+   Y         ++A  +F+    +
Sbjct: 238 GVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAYLPRSSQIPAIRALIDFLVEALQ 296


>gi|295689795|ref|YP_003593488.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295431698|gb|ADG10870.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 294

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 121/292 (41%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  +L  F  VAR  SF  A E+  ++ S+IS  ++ LE  VGI+L  R  R ++LT+ G
Sbjct: 5   DLSELAAFDAVARHKSFRRAGEERGVTASAISHAVTNLEARVGIRLLNRTTRSVSLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    S  +  + +    L +    P GK+RI     +   +L   +       P++ 
Sbjct: 65  AMLLSRLSPAFGDIGSAMDGLNQFRDTPFGKVRINAPSSIASFVLGPVVGRLAEANPNLA 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+++  ++ +DI  +  D  IRL + ++      R    +      +P Y      P + 
Sbjct: 125 IEIVTTDRLVDIVEEGFDAGIRLGESLRDGMTAVRIQPRLRFAVVGSPAYFAKRPLPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +   +L P  +          R +       L  + +  +++  + G+G+A 
Sbjct: 185 ADLAGHVCL--QNLYPTGVRYAWEFIKDGRSVEFQPTGPLASDDHELLVEAALSGAGLAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + +   +    +  LVR +E    P   +Y  YP     +  L+A    +  
Sbjct: 243 VWENRAERDLRDGRLVRCLEPWCQPEDWLYLYYPTRKYISAGLRAVIELLRA 294


>gi|134293800|ref|YP_001117536.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136957|gb|ABO58071.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 298

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 131/292 (44%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +F  +A SGS +  A  L   +SS+SR +  LETE+G  LF R  R   LT+ 
Sbjct: 1   MDQADLIIFLRLADSGSLSGTARTLKSPKSSVSRALVRLETEIGSALFDRSTRHFRLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    S   H L+  Q  +   + +P G LRI TT    Q L+   L EFL  YP +
Sbjct: 61  GKLLLPYASRAVHDLQEAQAIIDGYAGEPRGLLRINTTQSFAQGLVAPMLPEFLDRYPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L  D+  +DI+ +  D A+R+   +  SSL+ R+L  + +   A+P YL     P++
Sbjct: 121 TVELTTDSNYVDIAREGIDVAVRVG-TLPDSSLVARRLPPVELWLCASPSYLSRSGAPMA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H L+          +D     T+      PR S + +    +       G GI 
Sbjct: 180 ASELHGHRLVVREAPTSWVFQDGQAELTI-----RPRGSAI-IPDAAAQKIVLEGGGGIG 233

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LP Y+         LVR++  +      ++  YP     + K++ F + + 
Sbjct: 234 FLPSYLAAPALRAGTLVRVLPSLRREPIELHALYPTHRSMSAKVRVFIDALV 285


>gi|283834984|ref|ZP_06354725.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291069266|gb|EFE07375.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 308

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 134/301 (44%), Gaps = 12/301 (3%)

Query: 1   MS--FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           MS       L  F  +   G  + AA QL++S S++S+ ++ +E  +G  L  R  R +T
Sbjct: 1   MSTPISLKHLEFFTKIVDCGGLSEAAAQLNVSPSAVSKSLAAMEDTLGTTLIKRTTRSIT 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT+ G  L    +++  + + T          P G+LRI  +I  G + L   + ++   
Sbjct: 61  LTDAGQYLFNRANKLLKEFDETLNTTSGYYHSPQGELRITCSIAFGYSRLVNLVDKYRAQ 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +PD+ + + L++  ++++    D A+R+       +   RKLV +     A+P YL    
Sbjct: 121 FPDVNLYIDLNDNFVNLNETDFDIALRISSA-PPQNYAMRKLVPVRWAYCASPGYLAKKG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P    +L  H+ + +  L P            DR         +Q NS L +++  +  
Sbjct: 180 MPQRRSDLVNHDCLVYPGLTPV----LKVADEQDRLHQLKLHMPIQANSSLVLLKSVLED 235

Query: 239 SGIALLPDYIVKDNP---NLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+A LP Y++ D+     +  +M D  +   +  +Y  Y  +  +  K+++F +F+  +
Sbjct: 236 QGVAYLPTYLIGDHIQKEEITPLMLDGTITCETHALYALYFPSKYSNPKVRSFIDFLVAE 295

Query: 294 A 294
            
Sbjct: 296 L 296


>gi|78062934|ref|YP_372842.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970819|gb|ABB12198.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 318

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 135/299 (45%), Gaps = 9/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF      G+F+  A +    Q +IS+ ++  E E+G++L  R    L  T+
Sbjct: 1   MDSLRSMRVFVRAIELGNFSAVAREEGTGQPTISKIVAAFEKELGVRLLERSTTSLAPTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V  +  +   E++  +V+P GKL +   + LG+  L   + EFL  +P+
Sbjct: 61  EGRRFYDRCKRVIDEYASAVAEVRGQTVRPVGKLVVNAPLGLGELRLNALVLEFLAAWPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L L ++ ID+  +  D AIRL   +   + + R + +      A P Y+    +  
Sbjct: 121 IEVELQLTDRVIDLVEEGVDVAIRLGNLLPPDA-VARHIASSPRLLVATPGYVSQAPKLR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L KH  + +       + +    A  D  +  P     +VNS +++ +  + G  +
Sbjct: 180 RPDDLAKHEYVGYA---RADIANELAFARGDEQVVVPVRGRYRVNSSMALRECFLAGHAV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              P ++V+   D+  LVR++    + P  T++  Y        + + F  F+  +  +
Sbjct: 237 GSGPAWLVQDLIDSGQLVRLLPKWDMVPPHTLHLVYASRRYLPLRTRTFLQFMEQRIPE 295


>gi|83943749|ref|ZP_00956207.1| hypothetical protein EE36_11064 [Sulfitobacter sp. EE-36]
 gi|83845429|gb|EAP83308.1| hypothetical protein EE36_11064 [Sulfitobacter sp. EE-36]
          Length = 301

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 7/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LR+F + A   + + A   L L+ +  S +++ LE E+G++L  R  R ++L+ +
Sbjct: 1   MDTDNLRLFVMAADRLNISAAGRNLGLAPAVASARLAKLEQELGVELLRRTTRKVSLSLE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS       E+  + E  +  L      P G +R A      Q  +   L +F   +PD+
Sbjct: 61  GSDFLPYAREILAQAEAAKAVLGSHETSPKGTIRFAAPSSFAQRHIMPLLPQFHAAFPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L +   D      D A+R   P+  SSL  RKL        A+P YL+    P S
Sbjct: 121 TLELRLSDARFDAIEGSFDLALR-AAPLTDSSLKGRKLAGDTRVLCASPAYLEEHGVPQS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H  + + DL P+ +           P     I    V+   +  +  + G+G++
Sbjct: 180 PAELRGHRFLAWIDLEPRELIAPEGETAPLDPAQ--MICRTIVDDGDAQREATLAGAGLS 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRNFIFL 292
           +   + V D   +  L+R++ +      +V +  YP +   T K +   +F+  
Sbjct: 238 INSLWSVSDELRSGRLIRVLPEWKLNDSSVLWLMYPRSNVLTPKTRILIDFLIA 291


>gi|107027812|ref|YP_625323.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693478|ref|YP_839011.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897186|gb|ABF80350.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651478|gb|ABK12118.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 301

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 4/283 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     VAR+ SFT AA QL +SQS++S  +  LE  +G +L  R++R +T TE G +L 
Sbjct: 13  LTALIAVARAKSFTRAAVQLGVSQSAVSHAVRALEERLGARLLARNSRTVTPTEVGERLL 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            + +    +++     L +    P G +R+       + +L   LKEFL  YPDI+++L 
Sbjct: 73  HIVAPRLKEIDAEMSALSDLGGSPRGSIRVTAPDYPSRTILAPKLKEFLPKYPDIKVELS 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +DN+ +D+  +  D  +RL + I    +  +    +         Y      P +  +L 
Sbjct: 133 IDNRFVDLVAEQFDAGVRLGEAIAQDMIAVQIGPDVRFTVVGTKRYFATHAVPRTPGDLI 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ +    +    +  +       RP+       L  N     +   V G G+A +P+ 
Sbjct: 193 HHSCVNLRLMAHGGLWAWE-FEKGGRPVNVRVDGQLACNDIYECLAGAVAGLGLAYVPED 251

Query: 248 IVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           + +       L+ ++ D        Y  YP   + +G +    
Sbjct: 252 LAEPYIKAQHLIPVLTDWCPSWGGFYLYYPSRRQPSGAMALLV 294


>gi|298717287|ref|YP_003729929.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361477|gb|ADI78258.1| Uncharacterized HTH-type transcriptional regulator yafC [Pantoea
           vagans C9-1]
          Length = 292

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 135/295 (45%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LR++  V  +G+FT AAEQL LS+  +SR+++ LE  +G++L  R+ R L++T+ 
Sbjct: 1   MQIEDLRIYIAVIHAGNFTAAAEQLMLSKQYVSRRMAALEASLGVRLLIRNTRKLSVTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +    +  +++  ++ + E      G  RI   +  G + L   + EFL  +P +
Sbjct: 61  GLLFAQHAQRILDEIQEAELAVSEQQQTLRGTFRINLPMSFGMSHLSPLIAEFLSHHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q Q+ L ++ +D+  +  D AIR+   +  S+LI R L  +      +P YLK    P  
Sbjct: 121 QFQIELADRYVDVIGEGVDMAIRIG-TLADSTLIARPLGELKRVICCSPDYLKRAGTPQH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +H  + +G       E    L    +         +  N+   +    + G G+ 
Sbjct: 180 PDELLQHACLRYGREGQNGWE----LQVNGKAKWLAVQGPMVSNNGEVLRDAALAGLGLV 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP +IV+       LV +++    P  ++   YP+  + +   +    F+  + 
Sbjct: 236 LLPAFIVESALQRGELVTVLDGCQPPPLSLNAVYPQHRQRSEVNRQLLAFLQTRL 290


>gi|209543221|ref|YP_002275450.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530898|gb|ACI50835.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 299

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 121/289 (41%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  +   GSF+ AA    +S+   +  I  LE+ +G++L  R  R +  TE+G   +
Sbjct: 7   LDLFIRIVDRGSFSAAAAACGVSRPVATAAIKALESRLGVRLLQRSTRHVRPTEEGIAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R        L   +   + +    SG LR+     L + +L   L  FL  +P + + L 
Sbjct: 67  RRC---IAILADLEDADRNAGGTVSGVLRVDMVGYLARTVLLPALPNFLARHPALTVHLG 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              + +D+  +  DC +R    +  S ++ R +  +     A+P YL     P + ++L+
Sbjct: 124 EGERFVDLICEGVDCVVRAGA-LADSDMVARPVGVMQEVTVASPDYLARHGMPATPEDLE 182

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H +I F  +  +  +      T    + E  + + L V+   +       G G+   P 
Sbjct: 183 GHQMIGF--VSSRTGQPLPLEFTRGDEVIEVMLPTRLLVSGAETSAAAARQGLGLVQAPR 240

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           Y   D+     L+ ++ D       +   YP + + + +++ F +++  
Sbjct: 241 YRFIDDLANGTLIEVLADFPPTPTPLSVLYPGSRQLSPRVRVFVDWLVE 289


>gi|254255652|ref|ZP_04948968.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124901389|gb|EAY72139.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 396

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 122/297 (41%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +  F  AA +L++S S ISR ++ LE  +G++L  R  R + +T+
Sbjct: 96  MDRLQAMTTFVTVVETEGFASAARKLNVSPSVISRVMTELEEYLGVRLLTRTTRVVRITD 155

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  ++    +   P G+L +   +  G+  +   + E+L  YP 
Sbjct: 156 AGASFYEDCRRILADIDAAELSATGTGNTPRGQLTVTAPVLFGKTYVTPIVLEYLEHYPF 215

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +     ++ +++  + AD A+R+ + + +SSL    +  +     A+P YL+    P 
Sbjct: 216 VNLNCWFLDRIVNLVDEGADVAVRIGE-LPNSSLQAIPVGKVRRVLCASPDYLRAHGTPR 274

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  I    + P     F    T D+ +       L   +  S +     G GI
Sbjct: 275 HPDDLAAHVTIQATGITPAPEWRFR---TRDKTLAVAIQPRLLTTTNDSAIAAATAGLGI 331

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             L  Y V D      L  ++ +       V+  + E      K +AF +    K R
Sbjct: 332 VRLLSYQVADELAQGTLCVLLAEHELAPLPVHVVHREGRHANRKARAFIDLCVEKLR 388


>gi|83944023|ref|ZP_00956480.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
 gi|83845270|gb|EAP83150.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
          Length = 300

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 141/297 (47%), Gaps = 10/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L +F   AR G+   A  +  LS +S +++I  LE+EVG +L +R  R +++T
Sbjct: 1   MINDLKLLELFVRAARLGAIGKAGAEFGLSPTSATQRIQALESEVGAQLLHRTTRSVSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L +    ++  ++   +++   +    G LR+A     G+  +   + EFL ++P
Sbjct: 61  LEGERLLKHAERIFETVQDAMLDVSGENQVLRGTLRLAGPASFGRKYIAPFVTEFLSMHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +QL L +   DI  +  DCAIRL   ++SSSL  +KL +      AAP YLK    P
Sbjct: 121 GLTVQLHLSDTVFDIVDNGFDCAIRLGA-LESSSLKAQKLSSCPRILVAAPDYLKAMGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + Q+L   + +     I   ++++ +     +            N    + +  + G G
Sbjct: 180 QTPQDLVHFDCV-----IRDALQNWKFKGPHGKEAAVKVAGRFVTNLAEGVTEAAISGFG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA    + V ++     LV +++   + P + ++F +P       +++ FR+FI  K
Sbjct: 235 IARKCTWEVAEHLESGELVTVLDRYIVAPEWNIHFMHPPGGIEPLRVRQFRSFIKQK 291


>gi|163854312|ref|YP_001628610.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258040|emb|CAP40339.1| LysR-family transcriptional regulator [Bordetella petrii]
          Length = 305

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G +L  R  R   +T+ G
Sbjct: 7   DLNDLYYFVQVVDHGGFAPAGRALGIPKSKLSRRIALLEARLGARLLMRTTRQFAVTDIG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  +  +  +  +P G +R+   + L    +   L  F++ YP +Q
Sbjct: 67  QTYYAHCKAMLVEADAAEEAVALTRAEPRGTVRVTCPVALLDARVADMLAAFMVQYPLVQ 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P++ S L+ R L        A+P  L++   P +
Sbjct: 127 LHLEETNRRVDVVAEGVDVAIRVRPPPLEDSDLVMRVLADRGQCLVASPALLQHTGVPRA 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G  +P+    +N L              L     L++    V G GI 
Sbjct: 187 PADLSGLPSLGLG--LPQGEHVWNLLGPDGAHAAVRHQPRLVTRGMLALRAAAVAGVGIV 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  ++++      LV ++ D       ++  +         ++A  +F+  +
Sbjct: 245 QLPTMLLREQFKRGELVTVLPDWAPRREIIHVVFASRRGQLPSVRALIDFLADR 298


>gi|160898765|ref|YP_001564347.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364349|gb|ABX35962.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 299

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 124/297 (41%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  +  F  V  +G F  AA +L +S S ++R +S LE  +G++L  R  R + +TE
Sbjct: 1   MDRFQSMTAFLAVVDTGGFASAARRLKVSPSVVTRAVSDLEERLGVRLLTRTTRFVRVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  +LE        +   P G+L +   ++ G+  +   + ++L  +P+
Sbjct: 61  AGTAYADSCRRILAELEEADEHAASAHAAPRGRLTLTAPVNFGRMHVLPVVHDYLGRFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +     ++ + +  +  D A+R+   +  SSL   ++ ++     A+P YL +   P 
Sbjct: 121 VDVNCWFVDRVVSLVDEGVDVAVRIGD-LPDSSLQAIRVGSVRQVLCASPAYLASHGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H  IT   L       F      D+ +       L   +  +     + G GI
Sbjct: 180 RPEELAQHTTITASGLTSTPEWRF---LEGDKALAVRLQPRLMSMTNEAAADCALAGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             LP Y +     +  L  ++E    P   ++  + E      +++AF +      R
Sbjct: 237 TRLPLYQIAKPVQDGTLRLVLEPFERPPLPIHVVHREGRHAAHRVRAFIDMAVDALR 293


>gi|91788928|ref|YP_549880.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91698153|gb|ABE44982.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 338

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 135/302 (44%), Gaps = 9/302 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   V   GS T AA  L ++   ++++++ LE  +G +LF R  R ++ T +
Sbjct: 1   MDRSDLELVLAVREHGSLTAAALSLDVAPPVVTKRLAALEARLGQRLFQRTTRRVSATAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +      +       + ELQE   +P+G +R+A T   G+  L   L +F   YP I
Sbjct: 61  GETMCERALALLQGFTALEAELQERQSEPTGLIRLAATFGFGRLWLGPALADFQERYPRI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQL L  +  D++    D AI L   +  Q++  + R+L        A+P Y++    P
Sbjct: 121 EIQLQLTEQLPDLAEGGFDGAIWLWEVEGRQAAQWVSRRLARNQRVLVASPRYIRQHGAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC---LQVNSYLSIMQYCV 236
            S+++L +H  +   +      + F+ W    +R     R+     L  NS   +  +CV
Sbjct: 181 ASLEDLQRHTCLIVRENGNATGQRFDVWPLHKEREKTPARVRVRGPLSSNSGELVRDWCV 240

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI L   + +     +  LVR++     P   +++  P    +  +++   +F+  +
Sbjct: 241 EGRGIMLRSLWDIAPQLASGELVRVLPGYAMPDADIHWLAPFRPDSPRRIRLLVDFLLAQ 300

Query: 294 AR 295
            +
Sbjct: 301 FQ 302


>gi|330820460|ref|YP_004349322.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327372455|gb|AEA63810.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 327

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 131/297 (44%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA  L+ +  ++SR +S LE  +  +L  R  R L+LT  G
Sbjct: 3   TLQNMRVFARVVEAGSFTAAALSLNSTTGAMSRAVSELEARLRTRLMNRSTRRLSLTPAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   ++   ++  + E   +  +PSG LR+ +   +GQ+ +   L  +    P++ 
Sbjct: 63  ESYLLRCRQILADVDAAEEEASCAHERPSGLLRLHSYASIGQHYVLPALNAYREQRPEVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L  +  D+    +D A+     +  S L+  +L        A+P YL++   P + 
Sbjct: 123 VELTLSQRVPDLFDGSSDMAVVTASSLPDSELVSYRLGETFSILCASPAYLRSRGAPATP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL  H+ +T         +    L T +  + + R+S  +Q N+  S+      G GI 
Sbjct: 183 AELAAHDCLTLQTPAFPTHDWL--LETREGQVEQIRVSGPVQTNTAESLAVAIGEGVGIG 240

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +LP Y       + +L+R++        ++Y  YP       K++ +  F+     D
Sbjct: 241 MLPLYAAIGLLRDGSLMRVLPAHTLQRMSIYALYPSRRFVDAKVRTWVEFLRADLPD 297


>gi|319763136|ref|YP_004127073.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330825199|ref|YP_004388502.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317117697|gb|ADV00186.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329310571|gb|AEB84986.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 305

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  VA  G F  A   L + +S +SR+++ LE  +G++L  R  R L+LTE G
Sbjct: 3   DLNDMLYFAEVAERGGFAAAGRALGIPKSRLSRRVAELEAHLGVRLLQRTTRTLSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +    +     + +   +P G +R+   + L Q +L   + +FL  +P ++
Sbjct: 63  EAYLRHCLTMRESAQAAADAVAQVRSEPRGTVRVTCPVTLAQTVLAELMPQFLERHPLVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ + N+ +++  +  D A+R+R  +  S S++ ++L        A+P  +     P +
Sbjct: 123 MEMQVTNRVVNVVEEGVDVALRVRATLDESGSMVVKRLGEGCQLLVASPAQIARQGMPGT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L + + +       +       +    R            +  L++    + G+G+ 
Sbjct: 183 LRDLARMDTLAMS--ASEGRASLRLIGPDGREETVQFTPRYVADDLLTLKHAALAGTGLC 240

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY+     +    VR++     P   V+  +      +  ++ F +F+
Sbjct: 241 WLPDYLCLAELEAGQFVRVLPQWSQPKGIVHAVFASRRGLSPAVRGFLDFL 291


>gi|322834526|ref|YP_004214553.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169727|gb|ADW75426.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 312

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 123/294 (41%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  +A   SF+ AAE L++ ++++S  +  LE  +G++LF R  R + +T+
Sbjct: 1   MDQIQAMKIFIRIAELESFSRAAEDLNVPRATVSTTLKRLEQRLGVRLFLRTTRQVKITD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   ++   LE +         +P+G +RI     L + ++   L  F   YP 
Sbjct: 61  EGKIYYQRCLQLISALEESDALFAHHKNQPAGIVRIDMPHSLARVMVIPALPTFYQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + +  ++  I++     DC +R   P +  +L  R L  +     A+P YL     P 
Sbjct: 121 ITLSVSANDNAINLLDQGVDCVVR-AWPSEDDNLQSRHLTDLKQITCASPEYLAKFGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H+ + +     +         T  +       S L V+   + +     G G+
Sbjct: 180 TPEDLTAHHAVGYFFAHQRADSHLE-FVTDGKIEKRQLASTLTVSGADAYVAAAKAGFGL 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               +  +        LV ++   + P   +Y  YP       +++   +++  
Sbjct: 239 IQASELAMTQELAQGELVEVLHQHLPPPMPLYIMYPPGRFLAPRIRVLLDWLIA 292


>gi|224585164|ref|YP_002638963.1| DNA-binding transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469692|gb|ACN47522.1| probable LysR-family transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 309

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V   GSFT AA QL +S SSIS+ ++ LE E+ +K   R  R + LTE G 
Sbjct: 4   LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKSLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    + H+++    +L   +  P G LRI  +  + QN+L G   + L  YP + +
Sbjct: 64  IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + +     +   +F  +A                N  ++++++   G+GIA +
Sbjct: 183 DLSSHSWLEYSV---RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGTGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V D     +L  ++    +    VY  Y E  K   K++   N +
Sbjct: 240 PLMWVIDEINRGDLEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINAL 288


>gi|150397932|ref|YP_001328399.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029447|gb|ABR61564.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 303

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 139/294 (47%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF      G F+ AA    ++ S++S+ +  LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEVFAKAVELGGFSAAARHYRMTPSAVSKLVLRLEERLGVRLVNRSTRRLQLTPEGHAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H  T  +   ++  +     +   P+G++R+      G ++L   + EF   +P + + +
Sbjct: 71  HERTVRILADIDEAERS-ASAGESPTGRVRLNVNASFGTHVLMRLVPEFRASFPAVSLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +  +D+     D AIR   P++SS+LI RKL    M    AP Y++    P S+++L
Sbjct: 130 VMTDAVVDLMEARTDVAIRAG-PLKSSTLIARKLGATRMMIVGAPSYVERYGMPSSLEDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + F     + ++ +   A     I  P    +QV+    + Q  + G+G+A L +
Sbjct: 189 AGHERLGF--CYARAVDGWPIRAE-GETIVLPASGAVQVSDGEGLRQLALAGAGLARLAE 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V+++     LV ++ED+       V+  Y  +      +++A  +F+   AR
Sbjct: 246 FTVREDVRAGRLVPVLEDLNPGDLEEVHAVYLGQGGALPARVRAVLDFLARHAR 299


>gi|87200778|ref|YP_498035.1| LysR family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136459|gb|ABD27201.1| transcriptional regulator, LysR family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 302

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 132/301 (43%), Gaps = 11/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  +R+F  VAR  SF  AA +LH+S  +++R ++ LE  +G +L  R  R + +TE
Sbjct: 1   MDRWQSMRIFAEVARHSSFAEAARRLHMSAPAVTRAVAALEEHIGTRLLVRSTRLVKVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++ +     +  ++   +     S   PSG L +      G+  +   L E+L  YP 
Sbjct: 61  AGARYYADCQRILAEIAEAEAMAAGSYATPSGTLTVTAPAMFGRMYVLPILTEYLDRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  + +  ++ +++  +  D A+R+   +  SS+I  ++ +  +    AP YL+    P 
Sbjct: 121 VIGRTLFVDRPVNLIEEGVDLAVRIGH-LTDSSMIATRVGSSRLVVVGAPDYLREHGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +  +               W    D  +       L  N+  + +   + G G+
Sbjct: 180 NPADLGRFRI----AASTAAWASPEWQFANDVKVRVE--PALLCNTNDAAINASLAGWGL 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A + DY V     +  L  ++E    P F ++  +PE L    K++AF +    K R  +
Sbjct: 234 ARVLDYQVGAAIADGRLQVVLESHEPPPFPIHVIHPEGLHAPAKVRAFIDLAVAKLRSSR 293

Query: 299 F 299
            
Sbjct: 294 L 294


>gi|312960406|ref|ZP_07774915.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311285291|gb|EFQ63863.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 310

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 122/299 (40%), Gaps = 14/299 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +  LR+F  V   GSF+  A +  L+ SSISRQI  +E  +G +L YRH R +T TE 
Sbjct: 7   LSFKALRLFVAVLDHGSFSEVARREGLAPSSISRQIQLMEQALGQQLLYRHTRAVTPTEA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R    V  +LE     LQE   +PSG +RI   +  GQ  L   L E    YP +
Sbjct: 67  GRLLGRHARVVLEQLEAASQALQEQEREPSGLVRINAPMVFGQRHLSPWLGELCRRYPKL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ +   +  +D   D  D   R+   +  SS+  R          A+P YL     P  
Sbjct: 127 QLDIQQTDTFVDPLQDGTDLLFRIG-VLNDSSMQARIFAPQRFRIAASPAYLARHGTPRH 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVLGSG 240
             EL +H+ + +  +  +      W    D     P      +  N   ++      G G
Sbjct: 186 PDELSEHHCLAYKGINGQ----ERWFFRRDGGDWTPYSVKGPITGNHADTLTHAAEQGLG 241

Query: 241 IALLPDYIVKDN---PNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + + P +++ ++     L  ++             +   +P + + + K++   ++   
Sbjct: 242 LVVFPSWLIGESLRAGTLQAVLTQYEVATTLEPQQIAALWPGSRRLSLKVRTVIDYFVA 300


>gi|294142515|ref|YP_003558493.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328984|dbj|BAJ03715.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 301

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 132/299 (44%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   ++ F V+A  GSFT AAE L  S+S +S+Q+S LE+ +G+ L  R  R   LTEQ
Sbjct: 6   INLADVKAFTVIAEQGSFTKAAEVLICSRSHLSKQLSHLESYLGVTLITRTTRAQRLTEQ 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPD 121
           G             ++       +++    G ++I      LG+ ++ G + +F+L YP 
Sbjct: 66  GLAFFSRCKAALDSIDQAVDIAVDNAQNLQGSIKINCVGGYLGEEVVAGLINDFILKYPG 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L   ++ +D+ +D  D   R+ + ++ S L+ RKL+ I     A+P YL++   P 
Sbjct: 126 ISVELDFSSQRVDLLVDQFDLVFRMGE-LEDSGLVARKLMDISNLTLASPKYLQSRGYPQ 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L  H  IT            N    +D  I        +  +  ++    + G+GI
Sbjct: 185 DPKSLKTHQCITGSINNWSFYHVDNGEHKLDVHIN----GVFRCKNGRAMKHSALAGNGI 240

Query: 242 ALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             LP  Y V++     LV + ED        Y  Y +       L+ F  F     +D+
Sbjct: 241 VRLPQLYCVEELNRGELVSVFEDWRVADTPFYLLYHKDKFQPAILREFVGFTAEHFKDY 299


>gi|152996162|ref|YP_001340997.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837086|gb|ABR71062.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 298

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 144/298 (48%), Gaps = 11/298 (3%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS  + + +R F  V  + SF+ AAEQL++S++ +S+ IS LE ++G++L YR  R L+L
Sbjct: 1   MSTSFPEGIREFLAVVEAHSFSKAAEQLNISRARVSQIISRLEKDLGVQLLYRSTRSLSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLL 118
           +  G   +++  +   +LE   +  Q +     G++RI +     G+ +L   L  F+  
Sbjct: 61  SPAGETFYQLARQGVDQLEHAVLSAQNAHSSIGGQIRINSVGGLFGEEILAPILIRFMNE 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            P ++I+L   +   D+     D  +R+   + +S+LI RKL +   +  A P Y  +  
Sbjct: 121 NPKVEIELSFSSTREDLIESQYDLVVRMG-TLSNSNLIGRKLTSYTNYLVANPTYFDSMP 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +  S ++L  H LI  G +        +     + P+       L+ ++   +    + G
Sbjct: 180 KLNSPKDLLDHTLIN-GSVKRWSFTHISSKEKYELPVQ----GKLKCSNGHVVKLATLEG 234

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GI+  P Y VK +     L+ ++ D   P+  V   YP++   + ++KA  +++   
Sbjct: 235 TGISRQPSYYVKQDIQSGRLIVLLPDWQLPNSDVTLLYPQSRNISLRVKALVHYLMEA 292


>gi|269966743|ref|ZP_06180820.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
 gi|269828666|gb|EEZ82923.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
          Length = 309

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 134/292 (45%), Gaps = 7/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +AR  SFT AA ++ ++++++S+ +  LE ++ ++L  R  R ++LTE+G +L 
Sbjct: 11  LTWFAHIARHRSFTKAALEMGVTRAALSQHLKALEQQLQVRLINRTTRSMSLTEEGQRLL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +       +E    EL +S ++PSG +RI+ +    + L++  L EFL  YP I+++LI
Sbjct: 71  DILQPSLVNIEQVVNELNDSHLEPSGLIRISVSRTAARLLIEPYLGEFLSRYPKIRLELI 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQEL 186
           +D+   +I  +  D  IRL   +    ++   +   +      +P Y +    P + ++L
Sbjct: 131 MDDGFSNIVAEGVDAGIRLGLSL-DEHMVAIPITPPLTTAIVGSPEYFRQNGLPQTPEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           + HN + +       ++ ++  +     R +          N   S++Q  + G G+   
Sbjct: 190 EGHNCLAYRFTSSGTIDHWSLTSPDVAKRTLVFEPKGNAIFNDDYSMLQAAMQGVGLVKH 249

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            D  V+   D   L R++          Y   P       K++   +F+  K
Sbjct: 250 IDLWVEKHIDEGRLTRVLTPWCKEFPGFYLYIPSREHMPKKIRVLMDFLIEK 301


>gi|167579901|ref|ZP_02372775.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 310

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 117/295 (39%), Gaps = 5/295 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     SGK+R+++T D G+N L   L EF   YPD
Sbjct: 61  EGRLYLNCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRNQLLDWLDEFNARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   +   +   ++  D  D AIR   P    +LI R L        A+P ++     P 
Sbjct: 121 VTFSVTASDSSSNLWQDEIDLAIRFAAP-PDGALIARPLAANRRVLCASPAFVDKYGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPLDLARFPCNVITVASGPINVWRFTRGGDTQTYTVPLANAHETNDGGLTREWTIRGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           AL   + +  +     L  ++ +       ++  +        +++   +F+  +
Sbjct: 240 ALKSIWDIARDVRAGRLKVLLPEWRHQDAPLHAIHHSKRYMAPRVRVLLDFLVER 294


>gi|114563680|ref|YP_751193.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334973|gb|ABI72355.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 299

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 8/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L +F  +  +GS T +A+QL ++  ++S  +  LE ++ ++LF R  R L +T +
Sbjct: 1   MNTSDLHLFIRIVETGSITESAKQLSITPPAVSSALRRLEKQLDVQLFIRTTRQLRITPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      E    L   QI   +   K SG LR++ + DLG+N++   + E    +P +
Sbjct: 61  GEQFLFHCREALESLAQGQIAAHQIQGKISGNLRLSISSDLGRNIVLPWMMELTKQHPTL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L + +   D  +D  D A+R  KP + S+++   + T+     A+  YL    EPL 
Sbjct: 121 SIDLNIGDSLSDFFLDNVDIALRYGKP-EDSTMVSFLIATMDRITCASADYLSKWGEPLH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            +EL  HN +       K      W  +      + ++ S    N    + ++ + G GI
Sbjct: 180 PEELRTHNCLLHKK---KGYLFNQWEYSNQSGNHKIKVDSNNISNDTDIVRRWAIFGQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A   +  V  +     LV+I+ D  +P   ++   P   + T  + A R  +
Sbjct: 237 AYRAEIDVLADLRSGKLVQILSDYQSPPVELHLICPSRKQVTPAVLALRELL 288


>gi|289626680|ref|ZP_06459634.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330868399|gb|EGH03108.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 315

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 13/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LTE
Sbjct: 1   MDTLQNMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +PD
Sbjct: 61  AGKRYLLRCEQILASVEEAEAEASDAHARPAGQLKVHSMPGVGQHYVIDAIARYRRNHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L + ++  D+  +  + +I L   +  S  + ++L   +    A+P Y+K      
Sbjct: 121 VAFDLTMTHRVPDLLEEGYEVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMAH 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVL 237
              +L  H  +    L+        WL   D P G+  +    S L VNS  ++      
Sbjct: 181 KPADLLNHACL---RLVSPVFPLDKWLF--DGPEGQEMVTINSSPLLVNSADAMKTAISS 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI +LP Y   +   N  LVR++ D  +    +Y  YP       K++ +  ++
Sbjct: 236 GMGIGILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPSRQYLDAKIRTWVEYL 291


>gi|90023595|ref|YP_529422.1| LysR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89953195|gb|ABD83210.1| transcriptional regulator, LysR family [Saccharophagus degradans
           2-40]
          Length = 311

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 132/293 (45%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L+ F   A  GSF+ AA+Q     S+IS+ +  LETE+G+ LF+R  R L LTE
Sbjct: 1   MDKLTALKFFIATADCGSFSGAAKQFGSDPSTISKAVRRLETELGVLLFHRTTRSLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V   L  T+ EL + S +P G LRI      G+  L   ++ F   YP 
Sbjct: 61  AGHQYLGTAKSVTESLNNTEFELADKSNEPRGTLRINAPFTYGRRYLVPAIQSFREKYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++  L  ++  IDI  +  D A+R    ++ S LI R+L  +     A+P    +     
Sbjct: 121 VKFDLQFNDAYIDIIENRFDIALRSGS-LKDSRLIARQLSPMDFVVCASPDVAASLPADF 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S    ++   + F     +  +    L  VD  I E   +  L V+   S+ + CV G+G
Sbjct: 180 SPMHFNQVPWVRF--RFKQTGKLMPILFKVDGIIAEMECNADLVVDDGESMTELCVQGAG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A LP + +K   D   LV +       SF ++  YP+      K + F + +
Sbjct: 238 LAQLPHFALKADLDAGRLVPLFPSCTYSSFGIHIIYPKREYLPLKTRLFIDHM 290


>gi|154247265|ref|YP_001418223.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161350|gb|ABS68566.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 302

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 120/296 (40%), Gaps = 4/296 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VA   SFT AA +L  SQS++S  I  LE  VG++L  R  R +  T+ G
Sbjct: 5   DLADLNAFLAVAEERSFTRAAARLGTSQSALSHTIRRLEARVGVRLLTRTTRNVAPTQAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          + +    L E   +P+G +RI T     + ++   L+  L  +PDI 
Sbjct: 65  ERLLGTLRPALESIGSELTALAELRSRPAGTIRITTAEHAARTVIWPALERLLPDHPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D+   DI     D  +RL + +    +  R    + M    AP Y      P + 
Sbjct: 125 VELSIDSSFTDIVAGRFDAGVRLGEALAKDMVAVRIGPDLRMAVVGAPAYFAAHPIPRTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L +HN I    L    +  +  L    R I       L  ++   I++    G G+  
Sbjct: 185 QDLAEHNCINLRLLSSGALYAWE-LERDGREIRVRVEGQLAFDNIAMIVRAATAGFGLGF 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + +  V     +  LVR++ED        +  +P   + +         +  +  D
Sbjct: 244 VMEDQVAAEIADGRLVRVLEDWCPAFAGYHLYFPSRRQPSAAFAVLVEALRYRPAD 299


>gi|83749145|ref|ZP_00946149.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83724204|gb|EAP71378.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 305

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LE ++G +L  R +  +++T  G 
Sbjct: 4   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAELEAQLGTRLLQRSSHRVSVTPVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + L+ G L EF   +P ++I
Sbjct: 64  AVYRHAREMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLVSGWLAEFAQAHPKLRI 123

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L + N  +D+     D AIR    P+ S  ++ R L         +P  +    EP S 
Sbjct: 124 ELEVSNPYVDLIEQRIDVAIRAATGPLPSRDVVARHLGASPRVLVGSPALIARVGEPDSP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             LD    +  G L      D+  L         P    +  ++ +++ +  + G G A+
Sbjct: 184 AGLDALPCLGQGTLAR--CRDWVLLDARGHRHAMPIRPRMATDNLIALREAAIAGLGFAV 241

Query: 244 LP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP    +       L  ++         ++  YP        ++A  +F+  +
Sbjct: 242 LPLHCCHAALREGQLRTVLPAWTPEPADLHALYPSRAGVPPSVRALVSFLRER 294


>gi|323525583|ref|YP_004227736.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382585|gb|ADX54676.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 298

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 125/292 (42%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++++RVF  VA   SFT A++ L + +++++  +  +E  +G +L  R  R + LT 
Sbjct: 1   MDRFEEMRVFVRVAERQSFTRASDDLQIPRATVTNLVKRMEERLGARLLERTTRTVRLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +         P G LR+     L ++ +   L  FL  YP 
Sbjct: 61  DGQAYYGRCVRLIADLEEAEGSFSNL--APKGLLRVNLQGTLARHFIVPALPAFLARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL+   EP 
Sbjct: 119 IELTIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVAQLPQVTVASPAYLEQYGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L +H  + +              +   R         + V          V G GI
Sbjct: 178 DPHALARHRAVNYVSSATGKPVPLE-FSMEGRNTPMLLPGVVSVTGVELYTGSAVAGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P Y V+D   +  L  I+ D   P   V   YP+  + + +++ F  ++
Sbjct: 237 VQVPRYRVRDELASGRLKIILADFPPPPLPVSVLYPQNRQLSSRVRVFAQWL 288


>gi|170722039|ref|YP_001749727.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169760042|gb|ACA73358.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 310

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 130/297 (43%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R F  V   GSF  AA  L +S + +SR ++ LE ++  +L +R  R L ++
Sbjct: 1   MDM-LHAMRTFTRVVECGSFAAAANALDISAAQVSRIVAELENQLQTRLLHRTTRRLRMS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +    + ++    E    E + + + P G+LR+     LG  LL   +  +  L P
Sbjct: 60  EAGERFLERSRQILLLTEEAVGEARGAHLTPRGRLRLHCPHGLGL-LLMPLVAGYNALCP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  ++ D   +  D  I + + +  S LI   L TI     AAP YL+    P
Sbjct: 119 DVVVELTLSQRNPDPLAEGHDVVITVDEALPDSQLIAVPLGTIFSIPCAAPSYLEVHGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  +      P    D+ +   +D  +  PR S L  N   +++    LG G
Sbjct: 179 ERPEDLHEHRCLRMA--YPMYEGDWVFPQGLDHCVIAPRDSFL-TNVADAMLVASELGMG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I LLP Y      +   L R++         +Y  YP       K++ + +++  + 
Sbjct: 236 IGLLPFYTASQAIEQGRLRRLLAPYRLRECALYAMYPSRHYLDAKVRTWIDYLKEQL 292


>gi|110681268|ref|YP_684275.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109457384|gb|ABG33589.1| transcriptional regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 309

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 131/297 (44%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  + ++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISQLEDHLSVRLFQRTTRSLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +    E+   +E  + ++ + +  P G L IA  + LG+ L+   +  FL  YP
Sbjct: 60  EQGKAFYGGACEILSSVENAEAQVVDITENPKGALYIAAPLGLGRRLIAPQVPAFLAAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L L ++ +D++ +  D A  L +P   S+L  RK+  +     AAP Y+     P
Sbjct: 120 EVSIRLRLTDRKVDLTTEGLDLAFFLGQP-ADSTLRIRKIADVPRVLCAAPSYIAARGNP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +S  EL  D+H  +      P   E    L T +           + +    +  + + G
Sbjct: 179 MSGDELVADRHECLNL--RFPGATEFQWRLRTAEGLKKFRVTGRYESDDGDVLTDWALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI L P + + D+     LV +  +       +   +        K + F +F+  
Sbjct: 237 HGITLKPVFEISDHLKAGRLVPVAVETPPEPSQMACLFTHRKGQDPKTRLFMDFVIE 293


>gi|170698447|ref|ZP_02889519.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136618|gb|EDT04874.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 312

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 122/290 (42%), Gaps = 6/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++ H  E+    +   +    G LR++  ID G  ++   +      +P 
Sbjct: 66  AGRAFYDACRDIVHATESALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAIVALRDAHPG 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ I +++ +D+  D  D AIRL + +  S+    +L        A+P ++     P 
Sbjct: 126 LDVEQIANDRVVDLVADNLDVAIRLGR-LADSNYRAVQLGQYEKWVVASPAFVARHGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +      P          T          + +  N+  +     + G G 
Sbjct: 185 DPDALAALPFVMLS--TPSRPHTLELDDTSGGHASVRCTAPVVSNTATACRAIALAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             L D+ + ++     LVR++    +    ++  YP     + K++AF +
Sbjct: 243 GFLTDFSIAEDIAAGRLVRLLPAWRSARAGIHAVYPSTRLPSRKVRAFID 292


>gi|209548972|ref|YP_002280889.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534728|gb|ACI54663.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 295

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 123/293 (41%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  VAR  SF  A E+  ++ S+IS  +  LE  +GI+L  R  R ++LTE G
Sbjct: 5   ELSELAAFAAVARHRSFRKAGEERGVTASAISHAVLNLEDRIGIRLLNRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       + ++      L      P GK+RI     +G  ++   +   L   P++Q
Sbjct: 65  ELLISHLDPAFGEMAAALDALNRYRDTPFGKVRINVPNSIGPFVIGRVIAPLLQRNPNLQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +DI  +  D  IR  + +    +  R    I +    +P Y +   +P + 
Sbjct: 125 LEINATDRLVDIVEEGFDAGIRFGERVTEGMIALRIKQRIRLVVVGSPAYFEVRPKPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I   ++ P             + +       L ++ +  ++Q  + G G+A 
Sbjct: 185 HDLKRHLCI--QNMFPSGARYAWEFEKDGQTVSFQPTGPLSLDDHELMLQAALGGVGLAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +  V+    +  L++++ D       +Y  YP     +   +A  + +  +
Sbjct: 243 IWEPRVEKAIADGELIQVLHDWCQSEEPLYLYYPSRRHMSAGFRAVIDAMKAE 295


>gi|78062834|ref|YP_372742.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970719|gb|ABB12098.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 330

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 126/293 (43%), Gaps = 11/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V  +GSF+  A+++H+S S+++R+++ +E  +G+ L +R    +TLTE G   
Sbjct: 23  AMRAFVRVVETGSFSAVAKEMHVSTSTVARKVTAIEEALGVALLHRSTHSVTLTEAGHIY 82

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+ +
Sbjct: 83  LERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLVAPFLARYPTIQLDV 142

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+     D  I   +     +L+  +L        A P YL  C  P +  EL
Sbjct: 143 RLTDNHNDLVAGGFDLDIHEGENYLD-NLVVHRLSRNDSILCATPGYLDRCGRPSTPDEL 201

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +         D   L   D          L  +    +++    G GIA    
Sbjct: 202 KQHNCLRYVHPEGDPRWD---LVNGDAHHSLLPAGNLVTDHSELLLEATCAGLGIAEFEI 258

Query: 247 YIVKD---NPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFL 292
           ++V+D   +  L  ++      +      +Y  Y    +++ KL+  ++F+  
Sbjct: 259 WLVRDLLASGRLEAVLPRYRLQNRLTGEYIYIAYLANRRSSAKLRVLKDFLAE 311


>gi|120597235|ref|YP_961809.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146294586|ref|YP_001185010.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120557328|gb|ABM23255.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
 gi|145566276|gb|ABP77211.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 342

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 138/288 (47%), Gaps = 10/288 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    + VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTL
Sbjct: 20  MNKNMIKGMIVFATIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTL 79

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE GS  +    +V   +++T+ +L      PSG+L+IA  +  G  LL    +  L  +
Sbjct: 80  TEAGSLFYENCRKVISIVDSTEQKLNNLKGIPSGELKIAAPVGFGGGLLSEPFQYLLATH 139

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + L++ +  IDI  D  D AI +  P+  S+LI R L    M    +P YL     
Sbjct: 140 PQISLNLVMQDGPIDIVNDGIDLAICIG-PLSDSNLIARHLADWRMLLCTSPDYLPMHHN 198

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                EL   N I       + +     L   +          + VN+  +++Q  + G 
Sbjct: 199 IKHPSELAAFNRINHNYTKGELLTHHPSLECFELTG-----QRISVNNMQTLIQLTLDGL 253

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G A LP+  V D      LV ++ +    +++VY       +   K+K
Sbjct: 254 GYAALPEPEVLDYLDKGVLVPLLPEWSFNTYSVYSVTSARDRQPAKVK 301


>gi|94498983|ref|ZP_01305521.1| transcriptional regulators, LysR family protein [Oceanobacter sp.
           RED65]
 gi|94428615|gb|EAT13587.1| transcriptional regulators, LysR family protein [Oceanobacter sp.
           RED65]
          Length = 297

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 122/295 (41%), Gaps = 5/295 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  +  +   GSF+  A++   S + IS+ +  LE  VG KL  R+ R ++ TE
Sbjct: 1   MDRLKGLEYYKRIVELGSFSAVADEFDCSNAVISKYVKFLEDWVGAKLINRNTRTISFTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     +              + +    L IA+ + +   +L   + EF  L+P 
Sbjct: 61  EGKQFYEYCLRIDETTANLLDSFTNGTSQKE-VLSIASPVSMSLKVLSPLIIEFNRLHPS 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+L + ++ +D      D AIR  +  Q S+LI R +  I     A+  YL +   P 
Sbjct: 120 IKIKLDMSDQVLDFVASGVDLAIRAIEKPQDSTLIARHVTEIDRVVVASEGYLTDKGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL +H  + F          F       +         +  ++ L ++     G GI
Sbjct: 180 TVAELAEHECLIFSLSSDSHEWSFIDNNDPQKTKHVRVNGPIIADNSLFLIDAVKAGLGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP   ++D   +  L  I  D      ++Y  YP+      + + F +FI  K
Sbjct: 240 ASLPKAYIEDELASGLLKEIKLDASLQPRSLYAMYPDRRYLPKRARLFLDFIKQK 294


>gi|238758902|ref|ZP_04620074.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia aldovae
           ATCC 35236]
 gi|238702859|gb|EEP95404.1| Regulatory protein, LysR:LysR, substrate-binding [Yersinia aldovae
           ATCC 35236]
          Length = 303

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 130/287 (45%), Gaps = 10/287 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AA+ L +S++ ++R ++ +E   G +L +R  R L+LT  G     
Sbjct: 8   EVFVAIVERGSMIAAADALAMSRAMVTRYLAEMERWAGARLLHRTTRKLSLTHAGEATLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +     L+      SG LRI+ +  LGQ+ L   + ++L LYP + + L +
Sbjct: 68  RCRQMLEFAQDMAEGLE--HDVLSGLLRISCSQSLGQSALVIAVTDYLRLYPQVAVDLQM 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ I++  +  D A+R+   +   +LI R L T H    AAP YL     P +  +L  
Sbjct: 126 NNRAINLVEERIDLALRITNEL-DPNLIARPLSTCHSVVCAAPAYLSRQGIPRTPPDLAV 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+     K + +F+                L  N  + ++   + G+GI+L P Y 
Sbjct: 185 HNCLTYS-YFGKSLWNFDLQ---GEKSVVAVSGNLCANESVVLLNGALEGAGISLQPCYS 240

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 + +LVR++ D    +  +Y  Y    +    L+   +F+  
Sbjct: 241 AAPYIASGDLVRLLPDYQPQAMGIYGIYTSRRQMPAALRTMLDFLVE 287


>gi|227326618|ref|ZP_03830642.1| putative DNA-binding transcriptional regulator [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 308

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S S++S+ ++ LE E+ IKL  R  R + LTE G   +
Sbjct: 1   MSVFARVVEFGSFTAAARQLQMSVSAVSQTVTKLEDELQIKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H+      +L   +  P G LRI ++  + QN+L       L  YP + + L+
Sbjct: 61  HGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLSTMTAAMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  ++L ++ M   AA  YL     P    ++ 
Sbjct: 121 TGIPAPDLIADGLDIVIRVGA-LQDSSLFSKRLGSMPMVVCAAKSYLAQHGTPDKPADMV 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
             + + +         +F  +A                N   +++++   G+GIA +P  
Sbjct: 180 NFSWLEYSVRPDS---EFELIAPEGISTRVTPQGRFVTNDPQTLVRWLKAGAGIAYVPLM 236

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +IV +     +  +     +    VY  Y        K++   N++  
Sbjct: 237 WIVDEINRGEIEILFNRYHSDPRPVYALYTRKDNLPLKVQVCINYMTE 284


>gi|330446602|ref|ZP_08310254.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490793|dbj|GAA04751.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 294

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T A+ +  +  ++++R+I  LE  + I+L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRMVVENGSYTAASRKTQVPVATLTRRIQALEEGLNIRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K +   + +  +L  T   + E     +GKLRIA   ++ + +LQ  L  F+L +P I
Sbjct: 61  GQKFYHDCAPLLQQLLDTTEHISEECKGAAGKLRIAAPANITKVMLQPLLNAFMLEHPAI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL + N+   +     D   R+  P + S+LI R++  +     A+P YLK   EP  
Sbjct: 121 SIQLYMSNEPDQLDPTDWDVMFRIG-PQRDSTLIARRINEVKDILVASPDYLKKNPEPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L +H L+    L+   + + N        +        + +    + + C  G GI 
Sbjct: 180 AQDLHEHTLLKGNPLLRWRLNNHN-----GETVTINERGRFEASELNVVRKACCAGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L+PD +++       +V+++++       VY  Y        KL+ F +F
Sbjct: 235 LMPDVMLEKYIAAGEIVQVLKNWSANPRDVYLIYNHRDYQPEKLRLFIDF 284


>gi|91789268|ref|YP_550220.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91698493|gb|ABE45322.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 306

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 133/302 (44%), Gaps = 13/302 (4%)

Query: 1   MSFDWDKL-----RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M  ++D L      +F + A   SFT AA    ++ +++SR +S LE  +G++LF R  R
Sbjct: 1   MKRNFDDLLLGSIELFCLAAELSSFTAAAAAASVTPAAVSRSVSRLEERLGVRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G        +   +L   +  +      P+G LRI+         +   L +F
Sbjct: 61  QIRLTDGGRVYFEQCRQALLQLVDAERLVTGGQAAPAGLLRISMPTPYAHYRVLPLLPQF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP +Q+ + L N++ID + +  D AIR R P   S+LI RKL    +   AAP YLK
Sbjct: 121 RKRYPQVQVDVHLSNRNIDFADEGYDLAIRGRAP-DDSNLIARKLEDAALVLVAAPSYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--NSYLSIMQ 233
              +P ++ +L KH+ I F   +P       W    D    +          +  L +  
Sbjct: 180 RAGKPKTLDDLQKHDCIQFE--LPSTGRKIPWTFQHDGKDIDVVTKGSYCCLDDVLGVAT 237

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     YIV+ +    +LV +M      S      YP A   + +++ F +F+
Sbjct: 238 LVRSGAGLVQTYRYIVEKDLKNGDLVELMPQFGGSSRPFILLYPHARHLSLRVRTFVDFL 297

Query: 291 FL 292
             
Sbjct: 298 VE 299


>gi|330830209|ref|YP_004393161.1| putative HTH-type transcriptional regulator YafC [Aeromonas veronii
           B565]
 gi|328805345|gb|AEB50544.1| Putative HTH-type transcriptional regulator YafC [Aeromonas veronii
           B565]
          Length = 300

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 131/299 (43%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L +F  V  +GSF  AAE L +  S +SR I  LE ++   L  R  R ++LT
Sbjct: 1   MKTHSDELTLFVAVVEAGSFRQAAENLGMDNSVVSRGIKRLEEKLSTVLLNRTTRRVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+GS  ++   ++  ++   +  L     +P G LR+        + L   + EF   YP
Sbjct: 61  EEGSWFYQRAVKILTEMSEAEGHLLMRREQPEGVLRVDAATPFILHRLVPIIGEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++QL      I++     D AIR+ + +  SSL    L    +   A+P YL     P
Sbjct: 121 AIELQLHSSEGFINLMERRVDMAIRIGE-LTDSSLRALPLGRSRLRLLASPGYLSERGTP 179

Query: 181 LSIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               + L  H L+ F  L P  +  +  L + ++         L+ +S  ++ Q  + G 
Sbjct: 180 RQPADLLSGHELLGF--LHPDHLNHWP-LLSAEQGDRFAITPSLRASSGETLRQLALAGQ 236

Query: 240 GIALLPDYIV---KDNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  L D++    +++  LV ++       S  +   +    +   +L+ + +F+  + 
Sbjct: 237 GIVCLSDFMTGPDRESGALVEVLARSNSGASRPINAVFYSDAQRDIRLRVWLDFLKEQL 295


>gi|262279158|ref|ZP_06056943.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259509|gb|EEY78242.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 304

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 127/292 (43%), Gaps = 7/292 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +  F +    GSFT AAE L ++ S++ + I+ LE  +G++L +R  R + LT
Sbjct: 1   MESKFSGILEFVMAVEQGSFTGAAEILGITGSAVGKSINKLEKRLGVQLLHRTTRRIFLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G         +  +L+  +  L   +  P+G++R+      G+  +   L +    YP
Sbjct: 61  PEGEAWLVSCRRILEELDQIETLLSTENSYPTGRIRVDLPTTFGRRYIFPILLDLAQQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +   ++ +D+  +  D  +R+     S+ LI + L    +   A+P YL+    P
Sbjct: 121 QLDLSVTFQDRAVDMISEGVDLVVRIGDLEDSTDLIAKSLGHQTLLICASPAYLEKNGYP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            + ++L  HN +       +  +   +L      + E  I+   ++    +++  C    
Sbjct: 181 SNKEDLKHHNCLI---GWRRNYKGQWFLKNALGEMEEFEINYRHEIPDGDALLSACTSSL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GIA LP ++  D      L+ I+ +V      ++  + +      K++   +
Sbjct: 238 GIAQLPSWLAFDALRAGKLISILPEVSGVEIPIHVLWQKRWHLQPKIRVVVD 289


>gi|163738298|ref|ZP_02145713.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161388219|gb|EDQ12573.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 324

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 128/299 (42%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRVSPAVTSARISQLEEYLGVRLFQRTTRNLTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++  + ++   +  P G L +A  + LG+ LL     EFL  YP
Sbjct: 60  EQGRAFYDGAVAVLDAVDVAEAKVMHLTDTPRGTLFVAAPLGLGRRLLAPQTPEFLATYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L L ++ +D++ +  D A  L +P + S+L  RK+        AAP Y+     P
Sbjct: 120 EINLRLRLSDRAVDLTSEGLDLAFFLGQP-EDSNLRIRKIADCQRVLCAAPDYVARRGMP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                L  + H+ +      P   E    L T + P         + +    +  + + G
Sbjct: 179 EDGAALLREDHDCLNL--RYPGASEFQWLLQTSEGPRRFAVSGRYECDDGDVLTDWALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+ L P + V ++     LV + E        +   Y        K + F  ++  + 
Sbjct: 237 EGVVLKPLFEVAEHLAAGRLVPVAEATPPVPVQLACLYTHRRHQDPKTRLFMEYMTARL 295


>gi|51596403|ref|YP_070594.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 32953]
 gi|108807504|ref|YP_651420.1| LysR family transcriptional regulator [Yersinia pestis Antiqua]
 gi|108811780|ref|YP_647547.1| LysR family transcriptional regulator [Yersinia pestis Nepal516]
 gi|145598280|ref|YP_001162356.1| LysR family transcriptional regulator [Yersinia pestis Pestoides F]
 gi|149365926|ref|ZP_01887961.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           CA88-4125]
 gi|153947752|ref|YP_001400967.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|162420889|ref|YP_001606785.1| LysR family substrate-binding transcriptional regulator [Yersinia
           pestis Angola]
 gi|165927739|ref|ZP_02223571.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165939350|ref|ZP_02227898.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166009417|ref|ZP_02230315.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166210443|ref|ZP_02236478.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167401432|ref|ZP_02306929.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167420398|ref|ZP_02312151.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426562|ref|ZP_02318315.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170024338|ref|YP_001720843.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|186895447|ref|YP_001872559.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|218929251|ref|YP_002347126.1| LysR family transcriptional regulator [Yersinia pestis CO92]
 gi|229894825|ref|ZP_04510005.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides A]
 gi|229897569|ref|ZP_04512725.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229898214|ref|ZP_04513362.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229902075|ref|ZP_04517196.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|270490746|ref|ZP_06207820.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294503803|ref|YP_003567865.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Z176003]
 gi|51589685|emb|CAH21315.1| LysR-family transcriptional regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775428|gb|ABG17947.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|108779417|gb|ABG13475.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Antiqua]
 gi|115347862|emb|CAL20782.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           CO92]
 gi|145209976|gb|ABP39383.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149292339|gb|EDM42413.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           CA88-4125]
 gi|152959247|gb|ABS46708.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353704|gb|ABX87652.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis Angola]
 gi|165912691|gb|EDR31320.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165920353|gb|EDR37630.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165991972|gb|EDR44273.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166207623|gb|EDR52103.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166962093|gb|EDR58114.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167049128|gb|EDR60536.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054438|gb|EDR64250.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169750872|gb|ACA68390.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186698473|gb|ACC89102.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680971|gb|EEO77066.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|229688780|gb|EEO80848.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229693906|gb|EEO83955.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229702298|gb|EEO90317.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides A]
 gi|262362077|gb|ACY58798.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           D106004]
 gi|262365784|gb|ACY62341.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           D182038]
 gi|270339250|gb|EFA50027.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294354262|gb|ADE64603.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Z176003]
 gi|320015172|gb|ADV98743.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 301

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +  V   G F+ AA  L L +S +SR+++ LE  +G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYYAEVVEHGGFSAAARVLGLPKSKLSRRLALLEERLGVRLIQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  +    Q  +  +  +P G +RI   + L Q  +   L +F+   P + 
Sbjct: 63  RTYYEHCKAMIEEARAAQESIDLTRAEPRGVVRITCPVALLQATVSTMLADFMASCPLVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D   +  D AIR+R  P+Q+S L+ R L        A+P  +    E  +
Sbjct: 123 IHLEATNRQVDPVAEAIDIAIRVRPPPLQNSDLVLRVLGNRCQCLVASPELIGRQGEVNT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G   P+    +N                L      ++    + G G+ 
Sbjct: 183 PVDLTGWPSLGLGQ--PQQTFIWNLEGPEKAHAAVYHQPRLVTADMNTLRSAALAGVGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V +      LVR++ D       ++  YP        +++  +++  +
Sbjct: 241 QLPLMMVTEQLAEGTLVRLLPDWSVRHEIIHAVYPSRRGLLPSVRSVLDYLVQR 294


>gi|326403474|ref|YP_004283555.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325050335|dbj|BAJ80673.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 315

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 128/290 (44%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA + SFT AA +L +S+ ++S+ IS LE  +G  L  R +R L+LTE G
Sbjct: 6   DLEAWALFAKVAETRSFTRAASELGISKPTVSKAISRLEARIGTALLNRTSRRLSLTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R    +  + E  + E  + +  PSG +R+   +  G   +   L E    YP++ 
Sbjct: 66  RRAARSAGRILTEGEALETEAMDQATAPSGLVRLTAPMSFGIAHVAPLLPELFETYPELS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+     D AIR+   +  S+L  R++  +      AP Y +    P   
Sbjct: 126 VDLHLADEVVDLVGGGFDIAIRIAA-LPDSALRTRRVCRVRRLLVGAPEYFERRGRPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L KH  + +  L       F         +       L+VN+  ++    V G G+A+
Sbjct: 185 GDLAKHVCLGYAYLPSSSRWHFR--HATGEEVDVVPGGPLRVNNADALRPMLVAGRGLAV 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++  ++     L   M D   P   +    P +     ++ A  +F+
Sbjct: 243 QPEFMAAEDIAAGRLEVAMADWSMPPIALNIVTPPSGLRPARVTAVIDFL 292


>gi|317402314|gb|EFV82891.1| hypothetical protein HMPREF0005_00148 [Achromobacter xylosoxidans
           C54]
          Length = 303

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 128/301 (42%), Gaps = 10/301 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +  D L VF  V +S SF+ AAE L  S+S+++++I+ LE    ++L  R+ + ++L
Sbjct: 1   MEMNVIDCLEVFVEVGKSLSFSKAAESLASSRSAVTKKIAWLEAHFEVQLLNRNTKHVSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G  L      +   L   +  +Q   +  SG++RI T    G   +   +++FL  Y
Sbjct: 61  TESGRLLLENADTLALSLMNLKELVQGPVLTASGRIRIGTPPSFGTVHMVPAIQDFLARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I++ L++D+   D+  +  D ++R+   ++ S+ I  K+  +     A   YL     
Sbjct: 121 PAIKVSLLIDDGRGDLIAENLDLSVRIAPRLKDSNQIAYKITLVPQVVVATRDYLARHGR 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   Q+L++HN +      P     F                    N   ++M     G 
Sbjct: 181 PGKPQDLERHNCLVHSLKAPTGQWSFT--DAQSNTHVVRVAGSFNSNLGEALMNMTKRGG 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+++ P Y+V+    +  L  ++         ++           K++     +    R+
Sbjct: 239 GVSMHPRYMVEQDIADGALEVLLPGYEPQGLDIHAVVQTRRNQPDKVRLVVEHL----RN 294

Query: 297 W 297
           W
Sbjct: 295 W 295


>gi|253686666|ref|YP_003015856.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753244|gb|ACT11320.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 311

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 122/291 (41%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   GSFT AA QL +S S++S+ ++ LE E+ IKL  R  R + LTE G 
Sbjct: 4   LKSMSVFARVVEFGSFTAAARQLQMSVSAVSQTVTKLEDELQIKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     + H+      +L   +  P G LRI ++  + QN+L       L  YP + +
Sbjct: 64  IYYHGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLSTMTAAMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL  ++L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDIVIRVGA-LQDSSLFSKRLGSMPMVICAAKSYLAQHGTPDKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA +
Sbjct: 183 DMVNFSWLEYSVRPDS---EFELIAPEGISTRVTPQGRFVTNDPQTLVRWLKAGAGIAYV 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  ++V +     +  +     +    VY  Y        K++   N++  
Sbjct: 240 PLMWVVDEINRGEIEILFNRYHSDPRPVYALYTRKDNLPLKVQVCINYMTE 290


>gi|238896421|ref|YP_002921159.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548741|dbj|BAH65092.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 299

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 137/301 (45%), Gaps = 16/301 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGNISAAARKLEITPPSVSNALRLLEEHIGHSLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+     LE +   +++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTAAAVETLEKSLEIIRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           ++ + +  ++I  +  D  IR    ++   ++ R L+       YA+  YL     P   
Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILE-GGVVARPLMKPFREGLYASSAYLAEYGVPAMP 184

Query: 184 QELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +L  H LI +       ++P  + D     TV+ P        L  N    +      G
Sbjct: 185 ADLHHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI  L + I++   D    + +MED       VY  YP+    T ++KA  +F+ + A 
Sbjct: 239 LGIGRLFEPILQLQPDREQFIPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFLIMHAA 298

Query: 296 D 296
           +
Sbjct: 299 E 299


>gi|171319209|ref|ZP_02908327.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095589|gb|EDT40551.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 312

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 122/290 (42%), Gaps = 6/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++ H  E+    +   +    G LR++  ID G  ++   +      +P 
Sbjct: 66  AGRAFYDACRDIVHATESALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAIVALRDAHPG 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ I +++ +D+  D  D AIRL + +  S+    +L        A+P ++     P 
Sbjct: 126 LDVEQIANDRVVDLVADNLDVAIRLGR-LADSNYRAVQLGQYEKWVVASPAFVARHGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +      P          T          + +  N+  +     + G G 
Sbjct: 185 DPDALAALPFVMLS--TPSRPHTLELDDTSGGHASVRCTAPVVSNTATACRAIALAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             L D+ + ++     LVR++    +    ++  YP     + K++AF +
Sbjct: 243 GFLTDFSIAEDVAAGRLVRLLPAWRSARAGIHAVYPSTRLPSRKVRAFID 292


>gi|163857149|ref|YP_001631447.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163260877|emb|CAP43179.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 302

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 131/298 (43%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +++ RVF  VA  GSF  AA  L + ++S+S  +  LE +VG +L +R  R + +T 
Sbjct: 1   MDRFEQYRVFAQVAEMGSFIKAANALGMPRASVSAAVQQLEAQVGARLLHRTTRQVRVTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +  ++E      Q    + SG+L I     + + L+   L   L  +P 
Sbjct: 61  DGMQLLDRVRLLLAEVEDIDQLFQAGQRQVSGRLNIDAPSRIARRLIAPMLPGLLRRHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI L   ++ ID+  +  DC +R+   +  SSL+ R L  + M   A+P YL+   EP 
Sbjct: 121 LQISLGCTDRAIDLIREGVDCVVRVG-TLHDSSLVARPLGHVSMANCASPAYLREFGEPR 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L   H ++ +          + +             S + V++  + +  C+ G G
Sbjct: 180 QPGDLSSGHWVVGYAPAGLGRQAAWEYQQRDGNVRVIELPSRVLVDNVENYIACCLAGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  +P + V+       LV +M D   P   V   YP     + +L AF  +   + R
Sbjct: 240 LIQIPRFDVQHLLAAGALVEVMPDSPAPPMPVTLLYPHRRPRSRRLIAFLEWFESQMR 297


>gi|83591801|ref|YP_425553.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83574715|gb|ABC21266.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 297

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF   A  GSF  AAE L +S   +++ +  LE  +G  L  R  R  +LT+
Sbjct: 1   MDRLTSMGVFIKAADLGSFAAAAEALAMSPQMVAKHVVFLEDRLGTALLNRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  + E  +    +   +P G LR+   +  G   L   +  +L  YP+
Sbjct: 61  VGRAYYDRCKLVLSEAEAAEALAHDMRSRPQGVLRVNAPMTFGAFTLAPFVTRYLTRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L+++ +D   D  +  +R+ + I  ++LI   L    + A AAP YL     P 
Sbjct: 121 MRVDLTLNDRFVDPLEDGVEVMVRIGE-IADTALIAHPLAPYRLIACAAPSYLAARGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L  H+ + +    P       W+ T +    E R     +   + +++     G G
Sbjct: 180 EPADLQGHDCLVYAYWSPSI--PCPWVFTREGQSHEVRANGRFRSTDWKALLHAATAGFG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I L P+ ++ D      LVR++ D   P+  ++  YP   + T KL++F + +  +
Sbjct: 238 ITLGPESVLADEVAAGRLVRVLPDYQGPARPMHVLYPAGRRPTVKLRSFVDAVVEE 293


>gi|134291875|ref|YP_001115644.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135064|gb|ABO59389.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 301

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 130/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +   S  +  LE +VG+ L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMTSFTRAAESLGIQKGRASMVVRQLERDVGVALLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++  +++  Q     S  +  G+LR+    +L ++++   L + +  +P+++
Sbjct: 63  RAFYARARDLLAEVQELQSMFSGSGTRLRGRLRVDMPTELARSVVVPALPQLMAAHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC +RL  PI   +LI R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLVQEGFDCVVRLG-PIIDDTLIARPLGRLRMINAASPDYLARHGVPHTL 181

Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L    H ++ +   +      + +    D        S +QVN+  +     + G G+
Sbjct: 182 DDLLGQGHRMVHYSLTLGARHAGWEYPKG-DGYATLALPSAMQVNNVQTYHAAGLAGIGL 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                  V  +     LV ++ D+                 + +++AF ++I
Sbjct: 241 IQAGYSGVAPHIASGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRAFMDWI 292


>gi|288961631|ref|YP_003451941.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288913911|dbj|BAI75397.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 296

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 128/301 (42%), Gaps = 11/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  +R+F  VA +GSF   A  +HLS  +++R ++ LE  +G +LF R  R + LTE
Sbjct: 1   MDRWQAMRIFAKVAETGSFAETARLMHLSAPAVTRAVASLEDVIGARLFVRTTRSVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   +   +     S   P+G L I  +   GQ  +   + EFL ++P 
Sbjct: 61  AGIRYFEDCRRILADIAEAEAAAGGSYANPAGTLAITASALFGQMHVLPIVTEFLDIHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ + +  ++ ++I  +  D A+R+   +  S     K+ T+      +P Y +    PL
Sbjct: 121 MRARTLFIDRPVNIVEEGVDVAVRIGH-LPDSGFTAVKVGTVRRVICGSPAYFERHGAPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H +               W    D+ +    +  LQ N+  + +     G G+
Sbjct: 180 TPADLRNHRI----AASTSAWASPEWRFAGDQRVTIDLV--LQCNTNEAAIATAREGWGL 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +  Y +     + +L  ++ +   P   ++  YPE      K++AF +    + R  +
Sbjct: 234 TRVLHYQIGPALLDGSLRIVLSEHEEPPLPIHVLYPEGRHAPAKVRAFVDLAVARLRGNR 293

Query: 299 F 299
            
Sbjct: 294 L 294


>gi|117922006|ref|YP_871198.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614338|gb|ABK49792.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 331

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  
Sbjct: 1   MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  ++ +  +  +L+ T  E+     + SG LRI        N+L   +  F+ L+P +
Sbjct: 61  GSHFYQRSLNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMNVLMRAIFRFMDLHPRL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I   + +D+  +  D A  +   + +  L+ R + T  +  YA+P YL     P +
Sbjct: 121 TVEVINSAESVDMVKNNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPEYLAEHGTPRT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QE++ HN+  F     K   +      +              NS    +++ + G GI 
Sbjct: 181 PQEIESHNVSLFRLSNGKIFNEL----WIGAEQEVRVRGNFCSNSVEVAVEFALQGRGIV 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P  +V +      LV ++ ++       Y  YP     +   + F +FI  + 
Sbjct: 237 YAPTEVVAEYVAAGQLVTLLPEIDPHPGEFYLAYPSRRYVSLASRRFIDFILQEL 291


>gi|107022912|ref|YP_621239.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686845|ref|YP_840092.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893101|gb|ABF76266.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652560|gb|ABK13199.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 297

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 128/294 (43%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L VF  VAR  SFT AA +L +SQS++S+ +  LE  +G++L  R  R ++ TE G
Sbjct: 5   NFNDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLEARLGVRLLARTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +    ++      L +   KP+G +RI  T      ++   L+  L  YPDI+
Sbjct: 65  EALFNAVAPRIDEISAQLAALSDFRDKPAGVVRITATEHPIDTVIWPKLRAVLPDYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D    +I  +  D  +R    +    +  R    I M   AAP YL   + P   
Sbjct: 125 VELSVDYGLSNIVEERYDIGVRYGDQVAQDMIAVRISPDIRMAMVAAPSYLDGRKPPKKP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ +T      K +  + W     +   + R+   +  N+   ++Q  + G GIA
Sbjct: 185 QDLLDHDCVTLRLATAKGI--YAWELKKGKNAIQARVNGRITCNTQPHLLQAALDGFGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + + I   +     L  +M D        +  YP   + +       + +  +
Sbjct: 243 FVTEDIAHAHLRSGALRIVMPDWCPVFPGYHAYYPSRRQASRAFSVVIDALRHR 296


>gi|241113210|ref|YP_002973045.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861418|gb|ACS59084.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 298

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 124/293 (42%), Gaps = 7/293 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D + ++R F  VA+  SFT AA +L +++S++S  IS LE  +G++L  R  R +  
Sbjct: 1   MRRDEFTEMRAFLEVAQERSFTRAASKLGVTRSALSHTISALEARLGVRLLSRTTRDVAP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G++L       +  +      L     KPSG +R+    D  + + +  L  FL   
Sbjct: 61  TAAGARLVESIQPHFESIAAGISALGVLRDKPSGTVRLVCPDDAVELVFRSRLPAFLREC 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI ++LI+DN   +I     D  +RL + I    +  R    I      +P Y      
Sbjct: 121 PDITVELIVDNGFTNIVERQFDAGVRLGEAIARDMVAVRIGPDISYAVVGSPGYFAARTV 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P +  +L  HN +     +P     + W    D      R+   L +++    +   + G
Sbjct: 181 PSTPHDLTDHNCVNL--RLPTSGALYAWEFEKDGREFSVRVEGQLVMSNIGPAINAALDG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +G++ +P  +V+   D+  L  ++ D        +  YP     +    AF  
Sbjct: 239 AGLSYVPRDLVRQYCDSGQLKEVLTDWAPTFQGYHLYYPSRRHPSPAFSAFVE 291


>gi|89054899|ref|YP_510350.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864448|gb|ABD55325.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 294

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 120/290 (41%), Gaps = 8/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V   GSF   A     + S +SR ++ LE   G KLF+R  R L+LT  G   
Sbjct: 7   EIAAFVRVVELGSFASVASDTGYTSSGVSRMVTRLEENFGTKLFFRSTRQLSLTPDGEAF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   +E    +L +++  P G +R+        + L   L +F   YP I + +
Sbjct: 67  LPRARSILDAIEAAGADLSDAAETPRGHIRLNCGTAFANHKLAPRLADFATRYPHISLSI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D     AD  IR+   +  S+LI   L ++     A+P YL    EP   + L
Sbjct: 127 SVTDQRVDPVARQADVTIRVGD-LADSTLIAIPLGSVARVIAASPAYLAKHGEPQIARHL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            KHN +       +    F       +PI       L  +S  +++   + G+GI  L D
Sbjct: 186 LKHNCLLLNGFPHQAAWPF---LEKGQPITVSVKGTLTSDSAETLLHAAISGAGIIRLGD 242

Query: 247 YIVKD---NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
           ++  D   +  LV I+     P    +    P    +  +++A  NF+  
Sbjct: 243 FLGADALASGQLVPILTRTHDPVRQPITALVPPGRHSVPRVRALLNFLKA 292


>gi|22126059|ref|NP_669482.1| LysR-family transcriptional regulatory protein [Yersinia pestis KIM
           10]
 gi|45441752|ref|NP_993291.1| LysR family transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|21959012|gb|AAM85733.1|AE013820_7 putative regulator [Yersinia pestis KIM 10]
 gi|45436614|gb|AAS62168.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Microtus str. 91001]
          Length = 310

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +  V   G F+ AA  L L +S +SR+++ LE  +G++L  R  R   +T+ G
Sbjct: 12  DLNDLYYYAEVVEHGGFSAAARVLGLPKSKLSRRLALLEERLGVRLIQRSTRRFAVTDVG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  +    Q  +  +  +P G +RI   + L Q  +   L +F+   P + 
Sbjct: 72  RTYYEHCKAMIEEARAAQESIDLTRAEPRGVVRITCPVALLQATVSTMLADFMASCPLVT 131

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D   +  D AIR+R  P+Q+S L+ R L        A+P  +    E  +
Sbjct: 132 IHLEATNRQVDPVAEAIDIAIRVRPPPLQNSDLVLRVLGNRCQCLVASPELIGRQGEVNT 191

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G   P+    +N                L      ++    + G G+ 
Sbjct: 192 PVDLTGWPSLGLGQ--PQQTFIWNLEGPEKAHAAVYHQPRLVTADMNTLRSAALAGVGVV 249

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V +      LVR++ D       ++  YP        +++  +++  +
Sbjct: 250 QLPLMMVTEQLAEGTLVRLLPDWSVRHEIIHAVYPSRRGLLPSVRSVLDYLVQR 303


>gi|330816140|ref|YP_004359845.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327368533|gb|AEA59889.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 321

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 123/303 (40%), Gaps = 11/303 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             + VF  VA SGSF+ AA  L  S + +SR +S LE  +  +L  R+ R + LTE G +
Sbjct: 5   QNMSVFVRVAESGSFSGAAAALQRSTAQVSRAVSDLEAHLNTRLLNRNTRRVALTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIE--LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             R   ++   LE  + E    +    P G+LRI +    G + +   + EF+  YP I 
Sbjct: 65  YLRHCRKILADLEFAEAELLTDQPPQVPRGQLRIHSMTSFGTHYVMPLVAEFMRAYPQIS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L  + +DI  +  D  + +        ++ R+L  I     A+P YL     P + 
Sbjct: 125 IDLTLSQRSVDILNEMYDGTLTISDMPAGDGIVSRRLGEISCIVCASPDYLAAHGVPRTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +           D+ +                 VN   S+      G G+ +
Sbjct: 185 ADLQAHTCLHLRS-PGMPFSDWQFSGPAGIEQVRFEQHPFVVNVAASMAVAVEQGMGVGI 243

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-----AR 295
           LP  I         L R++     PS  V   +P   + + +L A+  F+  +     AR
Sbjct: 244 LPAPIALGGLRKGTLRRLLPAYTMPSMLVELAHPARAQLSPQLGAWIAFLADRLPAMLAR 303

Query: 296 DWK 298
           D +
Sbjct: 304 DAQ 306


>gi|107100779|ref|ZP_01364697.1| hypothetical protein PaerPA_01001807 [Pseudomonas aeruginosa PACS2]
 gi|218892567|ref|YP_002441436.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218772795|emb|CAW28580.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 302

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 139/296 (46%), Gaps = 11/296 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T + Y  L   +  L ES  +PSG+LRI+        ++   L EF+  YP +Q+++ 
Sbjct: 70  EQTEQPYRDLVRAREALGESLAEPSGQLRISALHLAKNLVIAPMLNEFVRRYPKVQLEIR 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +LD
Sbjct: 130 YEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPTYLAEYGTPASVADLD 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI--ALL 244
            H  + F    P+      W    D R +     +        +I++    G+GI  A +
Sbjct: 190 GHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTEAIIEAARAGAGIAQAFI 247

Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 248 RERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299


>gi|90410584|ref|ZP_01218600.1| hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90328825|gb|EAS45109.1| hypothetical transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 314

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/308 (23%), Positives = 136/308 (44%), Gaps = 17/308 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L +F   A  G+ T AA QL +S ++ S  +  LE ++GI+LF R  R L +T +
Sbjct: 1   MNTADLELFVRTADIGNITAAAVQLDISPAAASAALKRLEKQLGIELFIRSTRQLRITAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    L+  +  + E   + +G++R++ + DLG+NL+   L E +   P +
Sbjct: 61  GERFLLHCRQALSSLDDAKASITEMKGEIAGEVRLSVSSDLGRNLILPWLDEVMDNNPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             QL + +   D  MD  D A+R  +P + S++I  KL T+     A+P Y+     P  
Sbjct: 121 SFQLSIGDSLADFYMDKVDVALRYGQP-EDSTMIAFKLATVDRVICASPGYIATYGSPKK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLA------------TVDRPIGEPRISCLQVNSYLS 230
            ++L +HN + +  L  K    +  ++            ++         S    N    
Sbjct: 180 PEDLLQHNCLLY-QLGSKTYNQWELISKNSGNTISNTDDSIKSRSKIKVSSNRMCNDGDI 238

Query: 231 IMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           + ++ V G GIAL     +  +     ++ +M D      +++   P   + T  +   R
Sbjct: 239 VKRWAVAGKGIALKSRLDLSHDLNAGRVIELMPDYYVEPTSLWLICPNRKQVTPAILLLR 298

Query: 288 NFIFLKAR 295
           + + +K +
Sbjct: 299 DLLRVKCQ 306


>gi|49084442|gb|AAT51201.1| PA1328 [synthetic construct]
          Length = 303

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 139/296 (46%), Gaps = 11/296 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T + Y  L   +  L ES  +PSG+LRI+        ++   L EF+  YP +Q+++ 
Sbjct: 70  EQTEQPYRDLVRAREALGESLAEPSGQLRISALHLAKNLVIAPMLNEFVRRYPKVQLEIR 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P S+ +LD
Sbjct: 130 YEDQLVDIVRERLDAGIRLADALQPGMVGVQLTAPLACLLVATPAYLAEYGTPASVADLD 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGI--ALL 244
            H  + F    P+      W    D R +     +        +I++    G+GI  A +
Sbjct: 190 GHAAVRF--RFPRSGRLHKWRLREDGRELEVDLPARFVSTDTGAIIEAARAGAGIAQAFI 247

Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + +  D     LV ++     P   ++  Y        KL+AF   +    R+W+
Sbjct: 248 RERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRAFIELL----REWR 299


>gi|260768334|ref|ZP_05877268.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260616364|gb|EEX41549.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|315180044|gb|ADT86958.1| ranscriptional regulator, LysR family [Vibrio furnissii NCTC 11218]
          Length = 335

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 116/293 (39%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L ++ ++IS  I  LE ++G  LF R  R L LT +G 
Sbjct: 26  LNDLNIFVETARQGSFSQAAHSLDVTPAAISATIKRLEAQLGFALFVRSTRSLRLTHEGD 85

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L + T      ++    ++ ++    SG L ++   D G+N L   L EF  LYP+I I
Sbjct: 86  ILLQKTQTALSTIQEGLDQIAQAQGDISGTLNLSAPSDFGRNQLLTWLDEFAELYPNISI 145

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLSI 183
            L L +   ++     D AIR   P   S+ +   + T       A+P Y+ N       
Sbjct: 146 NLDLSDGITNLYHRPIDLAIRYGTP-PDSNFVALPICTCNTRIVCASPDYVSNKPAIAKP 204

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ + F            W             S    N    + ++ + G G+A 
Sbjct: 205 SDLLAHHCLCFMLSDTYHNRWTFW--KEGETDTVVVKSKRSANDGDVVRRWAINGRGVAY 262

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V     +  LV +M D  +    VY    +        +A   F+  K
Sbjct: 263 KSLLDVSQDIIDGRLVPLMPDWQSEPCPVYLVCADKRLLNHATRALHQFLQAK 315


>gi|260553964|ref|ZP_05826230.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260404918|gb|EEW98422.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 310

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 129/295 (43%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKKITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+     P 
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQKYHLAASPQYIAKYGTPD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL++H  + +     +    +      +  +  P    L  N+  S+M   + G GI
Sbjct: 185 HPTELNQHKCLVYKGF--EGPNRWLVRKPNEEWVHYPITPLLSSNNAESLMTAALHGMGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD+++ +     +L++++ +      +    +   YP        ++   ++
Sbjct: 243 VLFPDWLIGEALKQGDLIKLLPEYEVAIKSHPQHIAAIYPNVRHPPLNIRVVIDY 297


>gi|238790916|ref|ZP_04634665.1| LysR-family transcriptional regulator [Yersinia frederiksenii ATCC
           33641]
 gi|238720984|gb|EEQ12675.1| LysR-family transcriptional regulator [Yersinia frederiksenii ATCC
           33641]
          Length = 301

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 135/298 (45%), Gaps = 16/298 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR GS + AA +L ++  S+S+ +  LE  +G  LF R  R + LT+ G 
Sbjct: 6   YNQIRIFQSIAREGSISAAARKLEITPPSVSKSLKLLEQHIGHPLFARTTRRIELTDAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T      LE +   +++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTEAAVDTLEKSLENIRDQNQEPSGLVRITLSRFAYLLILKPVMAAFCQKYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           ++ + +  ++I     D  IR    ++   ++ R+L+       YA+  YL     P + 
Sbjct: 126 EISVYDGTVNIIEGRFDLGIRFGDILE-GGVVARQLMKPFREGLYASSAYLAQFGTPTTP 184

Query: 184 QELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +L +H LI +       ++P  ++D     TV+ P        L  N    +      G
Sbjct: 185 SDLYQHKLIGYRFITNNRILPLMLDDQGEQLTVEMP------GQLISNDIDVMADGIRSG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI  L + I +   D    + +ME        VY  YP+    T ++K   +F+  K
Sbjct: 239 LGIGRLFEPIHRLQPDKEEFLPVMESYWKTYPPVYLYYPKNAGKTKRVKTLIDFLIEK 296


>gi|183600926|ref|ZP_02962419.1| hypothetical protein PROSTU_04538 [Providencia stuartii ATCC 25827]
 gi|188019255|gb|EDU57295.1| hypothetical protein PROSTU_04538 [Providencia stuartii ATCC 25827]
          Length = 307

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 127/288 (44%), Gaps = 8/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +RVF  VAR  SF+ AAEQL +S + +S++I  LE  +G  LF R +R + LT +G 
Sbjct: 7   LEDIRVFVTVARLMSFSRAAEQLLVSPAYVSKRIKLLEENLGQTLFLRASRSINLTHEGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +      + H+L+     L     +  G+LR++ +   G   L   +      YP + I
Sbjct: 67  IVLSSGERLLHELDNMHNALNACREEIRGELRVSCSTGFGSAYLNPFILALRANYPLLGI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ IDI  +  D  I +   I     I +++        A+P YL+    P   Q
Sbjct: 127 DLTLTDRSIDIISENIDLDIYIGGTIPD-HYIAKQIAKNKRILCASPAYLEQHGSPNHPQ 185

Query: 185 ELD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL+ +H  IT  +      +    L      +     S L VN+     Q+C+ G GI L
Sbjct: 186 ELEKQHFCITIKERNQAPAQWK--LQHQTESMTVAPNSKLMVNNGDVAKQWCIGGEGILL 243

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
              + V    ++  L+R++     P+  VY  Y    +N   L+ F  
Sbjct: 244 RSLWSVLPELESGKLIRVLPQWSQPA-DVYAVYSRTARNNANLRVFIE 290


>gi|134293420|ref|YP_001117156.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136577|gb|ABO57691.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 319

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 124/299 (41%), Gaps = 5/299 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D    +R+F   A  G+ + A  +L  S ++ S +++ LE  +  +LF R+ R L L
Sbjct: 1   MATDRLGDMRLFVEAAALGNLSAAGRKLGFSPAAASARLAKLEAALSTRLFDRNTRQLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE+G   H   S     +E  +  L  S     GK+RI+ + D G++LL   L+ F+   
Sbjct: 61  TEEGRLYHHHCSIALRAIEDGEAALTASRGIARGKVRISASADFGRHLLNSWLEAFVRTQ 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+++I L L +   D+  D  D AIR  +P  + SLI R+L        A+P YL  C  
Sbjct: 121 PELKIALDLTDSVSDLLQDEVDLAIRFGRP-NNPSLIARRLAPNWRVLCASPDYLAKCGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PL   +L  H  +          E                 +  + N       + + G 
Sbjct: 180 PLVPADLVAHEFVVLVTAAGPLNEFRLVSEGKRCNHTVAMENAWETNDGALARAWTLAGY 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA    +    +     L  ++ D I     +Y         T +++   +F+  + +
Sbjct: 240 GIARKTIWDAAADIRAGKLQVVLPDWIESEPGIYAVLNRNRYMTPRVRVLLDFLVERFQ 298


>gi|53720343|ref|YP_109329.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|53725575|ref|YP_103629.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67643897|ref|ZP_00442640.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|76811870|ref|YP_334592.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121599054|ref|YP_992204.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|126441066|ref|YP_001060179.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126450013|ref|YP_001081451.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|134280277|ref|ZP_01766988.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167002590|ref|ZP_02268380.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167720952|ref|ZP_02404188.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167817145|ref|ZP_02448825.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167825558|ref|ZP_02457029.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167895628|ref|ZP_02483030.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167904021|ref|ZP_02491226.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912277|ref|ZP_02499368.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167920236|ref|ZP_02507327.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|226194214|ref|ZP_03789813.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813571|ref|YP_002898022.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|254175462|ref|ZP_04882122.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254180860|ref|ZP_04887458.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254191698|ref|ZP_04898201.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254202321|ref|ZP_04908684.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254207654|ref|ZP_04914004.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254260842|ref|ZP_04951896.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254299031|ref|ZP_04966481.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254356441|ref|ZP_04972717.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52210757|emb|CAH36741.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|52428998|gb|AAU49591.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76581323|gb|ABA50798.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei 1710b]
 gi|121227864|gb|ABM50382.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|126220559|gb|ABN84065.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126242883|gb|ABO05976.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134248284|gb|EBA48367.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147746568|gb|EDK53645.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147751548|gb|EDK58615.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148025438|gb|EDK83592.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157809016|gb|EDO86186.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157939369|gb|EDO95039.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696506|gb|EDP86476.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|184211399|gb|EDU08442.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|225933679|gb|EEH29667.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505501|gb|ACQ97819.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238525359|gb|EEP88787.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243061750|gb|EES43936.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254219531|gb|EET08915.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 326

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 123/287 (42%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  ++ +  +P G LR+A +  L    +   +  +   YP +++QL 
Sbjct: 67  DGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L    +D+     D  +     +  + +LI   L+   +   AAP Y++    P    +L
Sbjct: 127 LTEGALDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAPHRPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I       +    + ++                VNS   +    + G+GI++LP+
Sbjct: 187 VRHACIALP--ADQHASTWRFVDPDHFTHVVSLQPVYTVNSASMVRAATLAGTGISVLPE 244

Query: 247 YIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
             + D   +  LVRI+ D     P   +   YP       + ++F  
Sbjct: 245 SYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVE 291


>gi|22127063|ref|NP_670486.1| LysR-family transcriptional regulatory protein [Yersinia pestis KIM
           10]
 gi|45442624|ref|NP_994163.1| LysR family transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806467|ref|YP_650383.1| LysR family transcriptional regulator [Yersinia pestis Antiqua]
 gi|108813163|ref|YP_648930.1| LysR family transcriptional regulator [Yersinia pestis Nepal516]
 gi|145598998|ref|YP_001163074.1| LysR family transcriptional regulator [Yersinia pestis Pestoides F]
 gi|150260183|ref|ZP_01916911.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           CA88-4125]
 gi|153948332|ref|YP_001399953.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|162421243|ref|YP_001607603.1| LysR family substrate-binding transcriptional regulator [Yersinia
           pestis Angola]
 gi|165924899|ref|ZP_02220731.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165937387|ref|ZP_02225951.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010346|ref|ZP_02231244.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212848|ref|ZP_02238883.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167399715|ref|ZP_02305233.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167418734|ref|ZP_02310487.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167425282|ref|ZP_02317035.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167466651|ref|ZP_02331355.1| substrate-binding transcriptional regulator, LysR family protein
           [Yersinia pestis FV-1]
 gi|218927979|ref|YP_002345854.1| LysR family transcriptional regulator [Yersinia pestis CO92]
 gi|229837705|ref|ZP_04457865.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides A]
 gi|229840701|ref|ZP_04460860.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842743|ref|ZP_04462897.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229903609|ref|ZP_04518722.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|270487390|ref|ZP_06204464.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294503016|ref|YP_003567078.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Z176003]
 gi|21960116|gb|AAM86737.1|AE013920_1 putative transcriptional regulator [Yersinia pestis KIM 10]
 gi|45437489|gb|AAS63040.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108776811|gb|ABG19330.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|108778380|gb|ABG12438.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Antiqua]
 gi|115346590|emb|CAL19471.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           CO92]
 gi|145210694|gb|ABP40101.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149289591|gb|EDM39668.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           CA88-4125]
 gi|152959827|gb|ABS47288.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354058|gb|ABX88006.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis Angola]
 gi|165914861|gb|EDR33474.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165923099|gb|EDR40250.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990832|gb|EDR43133.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166206140|gb|EDR50620.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166962728|gb|EDR58749.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167050423|gb|EDR61831.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167055682|gb|EDR65466.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229679379|gb|EEO75482.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|229690223|gb|EEO82278.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229697067|gb|EEO87114.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229704082|gb|EEO91094.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides A]
 gi|262361052|gb|ACY57773.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           D106004]
 gi|262364996|gb|ACY61553.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           D182038]
 gi|270335894|gb|EFA46671.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294353475|gb|ADE63816.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Z176003]
 gi|320014130|gb|ADV97701.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 302

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++  +R ++ +E   G +L +R  R L+LT  G     
Sbjct: 8   EVFVAIVDRGSMIAAAESLEMSRAMATRYLAQMEQWAGARLLHRTTRKLSLTHAGEATLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +    +   +   + S +  G LRI+ +  LGQ+ L   + ++L  YP + + L +
Sbjct: 68  RCRRMLEFAQDMDLAEGQESEELRGLLRISCSQSLGQSALAIAVADYLRRYPQVAVDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ I++  +  D A+R+   +   +LI R L T +    A+P YL     P S Q+L  
Sbjct: 128 NNRAINLVEERIDLALRITNEL-DPNLIARPLSTCYSVVCASPAYLSVSGIPESPQDLTV 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E                   L  N  + ++   + G+GI L P Y 
Sbjct: 187 HNCLTYSYF----GESLWHFDQSGVKSSVAVSGNLSANESVVLLSGALEGAGITLQPIYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V        L++++ D    +  +Y  Y    +    L+   +F+  
Sbjct: 243 VAPYIARGELIKLLPDYQPQAMGIYGVYASRRQMPTTLRTMLDFLVE 289


>gi|259417229|ref|ZP_05741148.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259346135|gb|EEW57949.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 302

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 7/296 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR+F  V   GS T     + L+ +  S++I  LE  +G++LF R  R LT TE G +
Sbjct: 5   ESLRLFCRVVELGSITSGGRDVRLTPAVASKRIKELEEHLGVRLFNRTTRSLTPTEAGKR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +   +E  +  + + S +P G L+I   +  G+ ++   + +F+ L+P+I +Q
Sbjct: 65  FYQEALRILEVVEEAESVVAQFSGRPRGTLKITAPLAAGRLIIAPLVPDFVELHPEIDVQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + + ++ +DI  D  D A  +  P   SSL  RK+  +     A+P YL+    P   Q+
Sbjct: 125 MRMSDRRVDILADGLDLAFFVGTP-SDSSLKMRKIAGVERVLCASPSYLERYGTPRVPQD 183

Query: 186 LD-KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  KHN +      P+  E F  L T               +    ++ + +   GI   
Sbjct: 184 LMGKHNCLLL--RYPRSPEYFWTLNTESGFRKFEVSGKYDADDSEVLLNWALDHRGIVNK 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P + V ++     LV I+ +    +      YP       K++   +FI  + + +
Sbjct: 242 PRFEVAEHLRTGALVEILPEARPMAAIFGCLYPHKKLQDPKVRLLVDFITERGQAY 297


>gi|146337191|ref|YP_001202239.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146189997|emb|CAL73989.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 306

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 137/301 (45%), Gaps = 9/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +   VA   SF  AA  L+LS +++SR I+ LE  +G ++  R +R + LT+ G
Sbjct: 8   DFEGLALLARVAEERSFAGAARALNLSVATVSRAITRLEDRLGARVLNRTSRKVALTDFG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    + +  + E  +   +E S +P G + +A  +  G   +   L  F+  YP+I 
Sbjct: 68  RTLAERGARMLREAEEAESAARELSSRPRGTVNLAVPMSFGLREVSPLLPAFVREYPEIT 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +  +D+  D  D A+R+   +  SSLI R+L  +     A+P Y+     P + 
Sbjct: 128 LNLHLSDATVDLIGDGFDAALRIAA-LPDSSLIARRLRPMGRFLVASPDYIARYGRPQTP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL+ H+ + +          ++   T  R         L V +  +++   + G GIA 
Sbjct: 187 AELNVHHCLGYAYRARTAT--WHLTHTDGREAAVTPTGPLSVTNIDALLPALLDGIGIAE 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
           LP ++   +     L  ++ D   P   +YF  P A     +++    F+     ++R+ 
Sbjct: 245 LPCFVADPHVAEGRLEILLPDWKLPGGGLYFITPAAHVRPARIEVLSEFLARHLSRSREE 304

Query: 298 K 298
           +
Sbjct: 305 R 305


>gi|332978482|gb|EGK15194.1| LysR family transcriptional regulator [Psychrobacter sp.
           1501(2011)]
          Length = 301

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 137/286 (47%), Gaps = 4/286 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + VF  V   GSF+ AA QL ++ S++S+QI  LE ++G+ L +R  R L+LT
Sbjct: 2   MLDNLRGMAVFASVVGHGSFSGAARQLGITTSAVSQQIRSLEKDLGVVLLHRSTRKLSLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +    +V    +  +I++ +   + +G LRIATT +LG N +   L  ++  + 
Sbjct: 62  EAGASFYESAKDVVTAADQGRIKVNQLRDELAGSLRIATTPELGVNHILPALSTWMSAHD 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I  + DN  ID+  + AD AIR+   I+ SS+    L  +     A+PHYL+   + 
Sbjct: 122 DLSIHFLADNHYIDMIDERADIAIRMSPQIKDSSVATYPLAEVKQMLVASPHYLRQHEKI 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H LI+   +      DFN + T  +       S +Q N+          G G
Sbjct: 182 TKPKDLVSHQLISIDLMKDPNTLDFNSIET-GKKNRVKLPSRIQTNNVFLATTLAKEGHG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           +  +    V+    +  LV ++ +   P F +Y    +  +   K+
Sbjct: 241 LVRVMSLDVQKELASGELVEVIPEYSLPHFVLYAVTLDREQQPAKI 286


>gi|269101924|ref|ZP_06154621.1| glycine cleavage system transcriptional activator GcvA
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161822|gb|EEZ40318.1| glycine cleavage system transcriptional activator GcvA
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 303

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 127/294 (43%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  +     ++ E      G L I+         L   L +F   +PDI +
Sbjct: 68  SYFLDIKDIFSSIADATDKVLERGA--KGALTISLPPSFAIQWLVPRLIDFNEQHPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +    S L   KL    M    +P  L   +   ++ 
Sbjct: 126 RIKAVDLDEGSLTDDVDVAIYYGRG-NWSGLRADKLYQEFMMPLCSPMVLTGPKPLRTLD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          E  N++   D          +  +    ++Q    G GIAL 
Sbjct: 185 DLKNHTLLH----DTSRKEWKNYVRQYDIKGVNVNQGPI-FSHSTMVLQAAAHGQGIALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   +   LV   ++V+      Y    E   ++G+++AFR+++  KAR
Sbjct: 240 NNVLAQPELEAGRLVCPFDEVLMSKNAFYLVCQEKQADSGRIQAFRDWVLAKAR 293


>gi|260778702|ref|ZP_05887594.1| LysR-family transcriptional regulator [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604866|gb|EEX31161.1| LysR-family transcriptional regulator [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 291

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 127/284 (44%), Gaps = 10/284 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA+SGSFT  A++L +S+  ++R I  +E  + ++L +R  R ++LT  G    +
Sbjct: 8   KVFVDVAQSGSFTATADRLDMSRPMVTRYIEAMEDWLSVRLLHRTTRKVSLTTAGESCLK 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              +   + +       ++  + +G +RIAT++  G + L   +  F+ L+P + I + L
Sbjct: 68  QVEQWLEQADKLTA-TTDTGDELTGTVRIATSMSFGFSQLIPAITAFMKLHPKVSIDIDL 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            +   D++    D AIR+       SLI + +        A+P Y++N  E    ++L +
Sbjct: 127 QDSVTDMADSQIDLAIRIASN-PDPSLIGKPIAVCDSVIVASPSYVENV-ELSRPEDLSR 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
              + + +           L+  D          L  N    ++   + G+G+A+ P Y+
Sbjct: 185 FQCLGYKNFQRHVWH----LSKGDEHKAVEVHCQLTANEATVLLHAALNGAGLAIQPRYL 240

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +   +  LV+I+ +       VY  Y      +  ++   +F
Sbjct: 241 ADEYLSSGKLVQILPEWRPQQMKVYALYSSRKHLSRTVRCLIDF 284


>gi|220923367|ref|YP_002498669.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219947974|gb|ACL58366.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 310

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 131/289 (45%), Gaps = 5/289 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F     +GSF  AA +L+LS+S++ + ++ LE  +G +LF+R  R L LTE G   
Sbjct: 10  DLPAFVAAVEAGSFASAAAKLNLSRSAVGKAVTRLEGRLGTRLFHRTTRSLALTEDGQAF 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     L+  +  L+      +G+LR++  +  G+  +   L + +  +P +++ L
Sbjct: 70  FESCRRALGDLQAARAMLESGRRDVAGRLRVSVPVLFGRRCIAPVLVQLVEAHPRLELDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++ +D+  D  D  +R         L+ R++   HM   A+P YL     P ++ +L
Sbjct: 130 NFNDRLVDVVEDGFDLVVRNGPLRDWPGLMARRIARQHMRVCASPAYLAAHGIPHALTDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  + +G   P  +  + +      P      S ++ +   +I+   V G G+A LP 
Sbjct: 190 ARHRAVLYGR--PGRVRSWLFPQPGAAPAEVTPPSRMRFDDLGAILDAAVDGLGLAWLPC 247

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++  +     L  +++ + +  F  +  +P+      +++   + +  
Sbjct: 248 WLIGADVRAGRLATVLDHLPSHVFDSHALWPQTSHLPVRVRLAIDALAA 296


>gi|16263531|ref|NP_436324.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|14524232|gb|AAK65736.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 369

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 131/299 (43%), Gaps = 12/299 (4%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   +D L     F  VA  GS T  A  L  + S +SR I+ LE  +G +L  R  R L
Sbjct: 52  MGRRFDHLGDVEAFITVAEKGSMTEGAVTLSTTPSVLSRAITRLEARLGAQLMRRTTRRL 111

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
            LT++G          +  ++  +  +Q  +    +G +RI+     G   L   L  F 
Sbjct: 112 RLTDEGRAYLEQARAAFSMIDDAERAIQGPTGASLTGHVRISVPTTYGHYRLPAMLDRFT 171

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
            ++P++Q++L + N+++D+  +  D AIRL  P   S L+ RKL    +   A+PHYL+ 
Sbjct: 172 QIHPEVQVELSITNRNVDLVAEGYDLAIRLG-PFPDSGLVARKLEDAPLRLVASPHYLER 230

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQY 234
              P S+++L  H  + F  ++P       WL  V+    +  P       +  L ++  
Sbjct: 231 AGVPRSVEDLATHQCLPF--VMPSTGRCAPWLFRVEGRDVDWTPPGRIRVFDDVLGVVSL 288

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              G GI    D+IV+   +   LV ++E     S      +    + +   +   +F+
Sbjct: 289 AENGLGICQTYDFIVRGRIEQGRLVDVLEHARGRSRPFSLIFAPHRRLSAATRTLIDFL 347


>gi|170751071|ref|YP_001757331.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657593|gb|ACB26648.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 296

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 123/301 (40%), Gaps = 11/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  +R+F  VA + SF   A  +H+S  +++R ++ LE  +G +LF R  R + LTE
Sbjct: 1   MDRWQAMRIFAKVAETASFAETARLMHMSPPAVTRAVAALEETIGARLFVRTTRSVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +   +   +     S   PSG L +  ++  G   +   + ++L  YP 
Sbjct: 61  AGGRYYEDCRRILADIVEAEAAAAGSYATPSGTLAVTASVLFGHMHVLPIVTDYLDAYPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  + +  ++ ++I  +  D A+R+   +  S     ++ ++      +P Y +    P 
Sbjct: 121 MAARTLFVDRQVNIVEEGIDVAVRIGH-LSDSGFTAARVGSVRRVVCGSPAYFERHGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q+L  H +     +         W    D+ +       L  N+  + +   + G G+
Sbjct: 180 TPQDLRDHRV----AMSTGAWASTEWRFAQDQRVTVH--PALMSNTNEAGIAAALAGWGL 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             +  Y +        L  ++ D       ++  YPE  +   K++ F +    + R  +
Sbjct: 234 TRVLHYQIGSALLEGRLQVVLADYEEEPLPIHVVYPEGRQAPAKVRTFVDLAVARLRANR 293

Query: 299 F 299
            
Sbjct: 294 L 294


>gi|152997048|ref|YP_001341883.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837972|gb|ABR71948.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 299

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 131/289 (45%), Gaps = 13/289 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF  VA+S SF+  A++L++S+  ++R I  +E  + I+L +R  R ++LT  G    +
Sbjct: 8   KVFIDVAQSRSFSRTADRLNMSRPMVTRYIEAMEDWLKIRLLHRTTRKISLTSAGEACLK 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  + +   I L  +S + SG +RI +++  G + L   +++F+  +P + I + L
Sbjct: 68  DVELWLEQADNF-ISLVNTSEELSGLVRITSSMSFGFSQLMPAIQDFMDQHPKVHIDIDL 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC----REPLSIQ 184
           ++   D++    D AIR+       SLI + +        A+P YL+       +    Q
Sbjct: 127 EDSTADLTEKSIDLAIRIASN-PDPSLIGKPIAVCESVLVASPAYLERSRQTIGDIQHPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + + +L          L+  D+         L +N   +++   + G G+ L 
Sbjct: 186 DLINHDCLGYKNLERHIWH----LSQHDQFESVSLDCRLSINEATALLHATLNGMGVCLQ 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y+     ++ +L  ++ +       +Y  Y      +  ++A  + +
Sbjct: 242 PTYLANRYINDGSLCHVLPEWKPKDLIIYALYSSRKHLSPNVRALIDHL 290


>gi|332560737|ref|ZP_08415055.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332274535|gb|EGJ19851.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 298

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 8/298 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+LR F   A++GSFT AA+QL +S    S+ ++ LE  +G++L  R  R + LT 
Sbjct: 1   MDLTDELRAFVATAKTGSFTAAADQLGVSNRLTSKYVAELEKRLGVRLLQRTTRKVGLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +  +L+   +E+   S   +G +R++  +  G++ + G L  F  L P 
Sbjct: 61  SGETLLARAPALLDELDDLLVEVSHGSRGFTGTIRVSAPVTFGEDYVGGMLGRFAALNPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L++   D++ +  D A R+ +  ++ SL  RKL  +     A+P Y+     P 
Sbjct: 121 LVVDLRLNDSFADLASEGIDVAFRVGRS-ETLSLKTRKLGEVRTVPAASPGYIATRGAPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H+ I   D   +    + +L        E +    QVNS  +     + G GI
Sbjct: 180 RPEDLVRHDCIL--DTNRRVPRRWTFLEDGTEHSVEIK-GRFQVNSARAAADLAMAGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              P + + +   +  LV ++E        V   Y E      K++A  +F     R 
Sbjct: 237 CYAPRFALAEALRSGRLVPVLEAFGGAVVPVSAVYLEGRSLPQKVRALIDFALEDIRQ 294


>gi|325518907|gb|EGC98459.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 308

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 127/295 (43%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   NVNLNRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    E     +   +    G LR++  ID G  ++   +      +P 
Sbjct: 66  AGRAFYDACRDIVRATEHALDAVSSGTGVLRGTLRVSVPIDYGAQVVAAAIVALRDAHPA 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+ +++ +D+  +  D AIR+ + +  S+    +L T      A+P ++     P 
Sbjct: 126 LDVELVANDRVVDLVAENLDVAIRIGR-LADSNYRAVQLGTYEKWLVASPAFVARHGLPK 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +    L            T         ++ +  N+  +     + G G 
Sbjct: 185 DPSALAALPFVMLSSLPRPHT--LELEHTRGGSASVRCVAPVVSNTATACRAIVLAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LL D+ + D+     LVR++    +    ++  +P     + K++AF + +  +
Sbjct: 243 GLLTDFSIADDVAAGRLVRLLPAWRSAPAGIHAVFPSTRLPSPKVRAFVDAMKAR 297


>gi|307299931|ref|ZP_07579716.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306904820|gb|EFN35403.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 298

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 134/299 (44%), Gaps = 11/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +RVF  VA   SFT AAE L L +S+I+  +  LE  +G++L  R  R +  T 
Sbjct: 1   MDRFDAMRVFARVAERRSFTLAAEDLGLPRSTITDAVKQLEGRLGVRLLQRTTRVVRTTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LE  +     +   PSG LRI       ++ L   L+ FL  YPD
Sbjct: 61  DGEAYYHRCVRLIADLEDAEAVFSGA--SPSGLLRIDVHGTQARHFLLPGLQVFLDRYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +DI  +  DC +R    +  S LI RKL  +    +A+P YL     P 
Sbjct: 119 IRLHISETHQPVDIVREGYDCIVRAGH-LADSPLIGRKLAELKRGTFASPEYLARFGTPH 177

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             ++L D H ++         +  F + +A   R +  P  + + V    + +     G 
Sbjct: 178 VPEDLFDGHQMVGLLSSDTPSVAPFAFVVAGKARELTLP--TVVTVTGPETNVASACAGL 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+  +P Y V     +  LV ++ D       V+  Y   L+ + +L+ F ++I  + R
Sbjct: 236 GLIQVPRYRVASELASGALVEVLTDFPPSPLPVHVLYSHTLQLSPRLRVFIDWITERYR 294


>gi|254473562|ref|ZP_05086958.1| transcriptional regulator [Pseudovibrio sp. JE062]
 gi|211957274|gb|EEA92478.1| transcriptional regulator [Pseudovibrio sp. JE062]
          Length = 305

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 133/300 (44%), Gaps = 8/300 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS  + ++LR F  V  SGSFT AA +L L ++ +S Q++ LE E+G  L  R  R L +
Sbjct: 1   MSLYNLNRLRHFVEVVESGSFTAAARKLGLGKAIVSHQVAKLEEELGAALLVRTTRSLQV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G + +   +E+  + E    ELQ+    PSG L +    D G+ ++   L      +
Sbjct: 61  TEAGQRFYESAAEILEQAERAAQELQQEQDVPSGLLTVTAPEDYGRYVVAKALMRLRKKH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P IQ+  +  ++ +D   +  D +IR+   ++ SS I RK+ T   +  A+P  ++    
Sbjct: 121 PKIQVNAVFTDEKLDQLKEKIDVSIRVGW-LEDSSAIARKIGTFQQYTVASPSVVEALGP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +  +L     I    L  +              +  P ++     + L+     +   
Sbjct: 180 VETPLDLQGKPWIYHRKLPSEMTWRSEDEEEACFTLQAPEVTVW---NTLTSHACALGDG 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI +LP + ++D+     L RI+ +       +Y  +P +     K KAF   +    R+
Sbjct: 237 GICILPSFQIRDDLAAGRLQRILPNWHQKEGGIYALFPNSRFRPAKTKAFVEELIKAHRE 296


>gi|77458668|ref|YP_348174.1| DNA-binding transcriptional activator GcvA [Pseudomonas fluorescens
           Pf0-1]
 gi|77382671|gb|ABA74184.1| positive regulator of gcv operon, LysR family [Pseudomonas
           fluorescens Pf0-1]
          Length = 300

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 123/290 (42%), Gaps = 8/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LR F   AR  SFT AAE+L+++Q++IS QI  LE E+G++LF R   GL LTE+G
Sbjct: 7   SLNGLRAFECAARHMSFTRAAEELNVTQTAISHQIRRLEDELGVRLFMRLKDGLALTEEG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +         + +L  +  +L ESS      L I+T + +    L   L  F   +PDI 
Sbjct: 67  NAYLPGIRSAFLELRYSTEKLLESSHNS--VLTISTLVSVASKWLLPRLPSFREAHPDID 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++    + +D      D AIR         L    L+   +    +P  L   +   + 
Sbjct: 125 VRISASTEWVDFRKGGIDAAIRYGDG-NWPGLRADWLMADEIFPVCSPRLLTGDKPLNTP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H L+    +      D  WL    +P    +   L  +  +  +Q  + G G+ +
Sbjct: 184 ADLAHHPLLQVSGVTANDWND--WLHAAGQPPLTAKGPRLTFDLAMMAVQAAIDGQGVCI 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                V D+     LV   +  +  +   Y   P     + K+ AFR ++
Sbjct: 242 GRSTYVDDDLRAGRLVAPFDLRLKSASGFYLVTPHDQAESKKIVAFRGWL 291


>gi|238027211|ref|YP_002911442.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237876405|gb|ACR28738.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 330

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 119/276 (43%), Gaps = 11/276 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +  +S +  S +++ LE ++G +L +R  R +T T+ G         +    +  +  +
Sbjct: 41  REFGVSATVASTRLAQLERQLGARLLHRTTRRVTPTQDGELFLVRAQALLDAADAARAAV 100

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +P G+LR++ +   G+  +   +  FL  YP + I L L ++ +D+  D  D AI
Sbjct: 101 GHARREPHGRLRVSMSSSFGRQHVAPVIPAFLRRYPQVSIDLRLSDELVDLVDDGIDVAI 160

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R+   ++ SSL+ R+L        A+P YL     P    EL +H  +  GD      E 
Sbjct: 161 RIGA-LRDSSLVARRLAVNRRVVCASPAYLAAHGTPRHPAELARHQCVILGDQRDWAFE- 218

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMED 261
                T   P+       L  ++  +I +  V G GIA+   + V     + +LV ++ D
Sbjct: 219 -----TPAGPLTVRVGGRLVASNGEAIREALVDGFGIAIKSTWDVGPNLRDGSLVTVLAD 273

Query: 262 VIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                   ++  YP       KL AF +F+     D
Sbjct: 274 YPLAEPSAIWAVYPSRAFVPLKLHAFIDFLAAHLGD 309


>gi|170740666|ref|YP_001769321.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194940|gb|ACA16887.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 312

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 129/293 (44%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  +GS   AA +L L+ S++SR ++ LE  +G++L  R  R L LT +G   
Sbjct: 11  EMSAFLAVVAAGSLAGAARRLGLTPSAVSRIVARLEARLGVRLIVRTTRSLRLTAEGEVY 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R    +   L+ T+    +   +P G++R++     G+  +   L +F  L+P+I +++
Sbjct: 71  GRAARRILADLDETERAFADQ-GRPRGRVRVSAATAHGRLAVVPLLADFAALHPEIVVEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  D+    AD AIR   P+    L  R+L        A+P YL     PL   +L
Sbjct: 130 DLSDELADVLGGRADVAIRFG-PLADGPLTARRLGETGRTVVASPAYLARAGTPLVPADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN + F     +    F       R         ++ N+  +++Q  + G G+  + D
Sbjct: 189 AAHNCLEFSFRRVEPGWPFR---EDGRDHLLAVRGNMRANNGETLVQLALAGVGVTRVGD 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + + D+     LV ++E         ++  +        +L+   +F+  + R
Sbjct: 246 FHIADDLAAGRLVPLLEPFNPGDREAIHAVFVGGASMPARLRVLVDFLAERMR 298


>gi|207739776|ref|YP_002258169.1| hypothetical protein RSIPO_04480 [Ralstonia solanacearum IPO1609]
 gi|206593158|emb|CAQ60064.1| hypothetical protein RSIPO_04480 [Ralstonia solanacearum IPO1609]
          Length = 310

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LE ++G +L  R +  +++T  G 
Sbjct: 9   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAELEAQLGTRLLQRSSHRVSVTPVGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + L+ G L EF   +P ++I
Sbjct: 69  AVYRHAREMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLVSGWLAEFAQAHPKLRI 128

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L + N  +D+     D AIR    P+ S  ++ R L         +P  +    EP S 
Sbjct: 129 ELEVSNPYVDLIEQRIDVAIRAATGPLPSRDVVARHLGASPRVLVGSPALIARVGEPDSP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             LD    +  G L      D+  L         P    +  ++ +++ +  + G G A+
Sbjct: 189 AGLDALPCLGQGTLAR--CRDWVLLDARGHRHAMPIRPRMATDNLIALREAAIAGLGFAV 246

Query: 244 LP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP    +       L  ++         ++  YP        ++A  +F+  +
Sbjct: 247 LPLHCCHAALREGQLRTVLPAWTPEPADLHALYPSRAGVPPSVRALVSFLRER 299


>gi|161525324|ref|YP_001580336.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189349939|ref|YP_001945567.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160342753|gb|ABX15839.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189333961|dbj|BAG43031.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 305

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 119/297 (40%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F      G F  A   L++ +S +SR+I+ LE  +GI+L  R  R  T+T+ G
Sbjct: 7   DLNDLYYFVQAVEHGGFAPAGRALNMPKSKLSRRIALLEARLGIRLIQRSTRRFTVTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +     +P G +R++  I L  +L+   +  F+L  P ++
Sbjct: 67  QTYYAHCRAMLVEADAADEAVALLHEEPRGIVRVSCPIVLLDSLVGDMIAAFMLACPRVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P+  S L  R L        A+P  L+    P  
Sbjct: 127 IHLEATNRRVDVVGEGIDVAIRVRPPPLDDSDLALRVLAERGQCLVASPALLREHGTPAV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +    +    +P+    +                       L++    V G GI 
Sbjct: 187 PADLARLP--SLDHGVPQAAHVWRLRGPDGASAEIHHQPRFVTGGMLALRAAAVAGVGIV 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +V+D      LV ++ D       V+  +         ++A  +F+  +  +
Sbjct: 245 QLPTMMVRDELARGTLVTVLPDWAPRREIVHAVFASRRGLLPAVRALLDFLAARFAE 301


>gi|300694269|ref|YP_003750242.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299076306|emb|CBJ35618.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 316

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 126/296 (42%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  V   GSF+ AA  L + +S +SR+++ LE  +G++L  R  R + +T+ G
Sbjct: 3   DLNDLVLFAAVVTHGSFSGAARALGIPKSRVSRRVADLEQRLGVRLLQRSTRAVHVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S  +     +           + +  +PSG+LR++  + +    L   L +FL   P+++
Sbjct: 63  SAFYAQCEVMTQAARAAFEVAEHAGERPSGRLRVSCPVGVAHVFLAPVLSKFLRAQPEVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L + N+ +D+  +  D A+R+R  +  S+L+ R          A+P ++       S 
Sbjct: 123 LELDVTNRRVDVIGEGYDVALRVRSTLDDSNLVVRTFAASDQVLVASPSFVAERGPFDSA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             L     +          E   W  T      +    +     +    + Q  + G G+
Sbjct: 183 ASL---RGVAGVGFGGTGGERARWRLTSPGGTAVDIEYVPAFVTDDLFLLGQTAMAGVGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LP  +  D   +  LV ++ D   P   ++  +P        ++AF  F+  + 
Sbjct: 240 AQLPFNLCGDAIRDGRLVVLLPDHRLPVHQLHAVFPSRRGLVPAVRAFIEFLAEEL 295


>gi|218677013|ref|YP_002395832.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
 gi|218325281|emb|CAV27279.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 299

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 11/291 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA   SFT AAE L +S+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 2   MDRLTAMRSFVEVANCASFTQAAEHLDMSRLQVSRHVQEIEGWLKQRLLHRTTRKVSLTA 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++ H+    ++     +   SG +RIA  I L QN+L   +++F  L+P+
Sbjct: 62  AGEIALQRCEKILHETAELEVTSLNQTDDLSGVIRIAAPIGLTQNMLLDVVEQFTELHPN 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L   ++   +  +  D A+R        SLI RKL+ I     A+  YL    EP 
Sbjct: 122 ITVELFASDRFAQLVDERIDIALRYTDQ-PDDSLIARKLMEIDSVVCASQDYLDKHGEPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++ L +HN   F  L     +        ++         ++ N    + +    G GI
Sbjct: 181 TVEALRQHNC--FRHLSVSKWD----FVKDNQHYSVEVSGTIKANDVGVLTRAAQHGKGI 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             LP  +         L RI++D ++PS  ++  Y         ++ F +F
Sbjct: 235 VRLPCDLANPLIAGGKLKRILDDFVSPSSVLWAVYLSRSYQLPIVRQFIDF 285


>gi|319427671|gb|ADV55745.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 302

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 15/297 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA  GSFT AA+ L LS+  +SR I  +E  + ++L +R  R ++LT QG + 
Sbjct: 6   AIRSFVEVANCGSFTKAAQHLDLSRLQVSRHIQEIEQWLNLRLLHRTTRSVSLTLQGEET 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ L+P + IQL
Sbjct: 66  LQYCQRLLSEVAAMESRAHSHNTELVGSIRIATPIGLGQHSLFDVVDRFIKLHPKVNIQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +    +  +  D A+R  +     +LI R+L+ I     AAP YL N        +L
Sbjct: 126 AMSDSFAQLVDERVDVALRYTEQ-PDENLIARRLMMIDAVVCAAPTYLANTSPLNEPIDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN +             +W    ++     +++  L+ N    ++   + G GI  LP
Sbjct: 185 LAHNCLVH-------TAQHSWHFLKEKQSEVIKVTGNLKANDMGVLVSAALRGHGIVRLP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +      +  L  ++ D   P  T++  Y         ++AF +F    A+ W+ 
Sbjct: 238 CDLANQYLASGQLQEVLPDFTAPGQTLWAVYLSRSYQQMLVRAFIDF---TAQQWQL 291


>gi|254472253|ref|ZP_05085653.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211958536|gb|EEA93736.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 309

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 138/295 (46%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L VF  V   GSF  A  +L++ ++ +S Q++ LE  +G+++ +R  R L+LT  G 
Sbjct: 8   IRRLAVFACVVEQGSFAAAGRKLNMGRAKVSEQVALLEEALGVRVLHRSTRKLSLTTDGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +    +     +++ + + SG LR+  T D  Q +L   LK F+  YP +++
Sbjct: 68  RLLPHAQGLLQLSQDALASVEQGAEELSGTLRVTCTQDFMQRVLSRFLKGFVRRYPALKL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L++D++ +D+  D  D A+R+  P   S++I R L  +    YA+  YL     P  + 
Sbjct: 128 ELLVDDQKLDLIEDEVDVALRIGIP-ADSAMIGRVLCDVEFQLYASCDYLSEHGRPALVS 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I   D +   +   +              +  + NS   I+    +GSGI LL
Sbjct: 187 DLKNHRGI---DTLDVALNSLSLSDQTGLRRPISLHAMCRTNSPSGILSMVEIGSGIGLL 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN----FIFL 292
           P Y+V+D      + R++ D    S  +Y  YP   +   + + F +    ++  
Sbjct: 244 PLYLVRDAVERGTVERVLPDWSFGSAKLYLLYPSKKQLARRSRVFMDEFRKWLLE 298


>gi|186473730|ref|YP_001861072.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196062|gb|ACC74026.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 307

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 140/291 (48%), Gaps = 7/291 (2%)

Query: 1   MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ FDWD LR+F   ARS S   AA  L +SQS+ISR+I  LE + G KLF R ++GL L
Sbjct: 1   MNQFDWDNLRIFLGAARSQSALEAAHALKMSQSTISRRIQRLERDTGSKLFERSSQGLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G +L      +   L+  +  +   SV  +G++R+  T   G   L   +  F   +
Sbjct: 61  TAAGHRLLEHVERLETTLQAVETSVFSDSVTLTGEIRLGATEGFGTFFLAPQVTHFCARH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + ++   +++++S   AD ++ + +P  +S  +  KL    +  YA P YL     
Sbjct: 121 PGITVDVLPLPRNVNLSKREADASVAIDRPSANS-FVTCKLTEYRLLPYATPQYLSEHPP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + ++L  H  I + D +    + F+    +  P  +P     +  S ++  +    G 
Sbjct: 180 IKTTEDLIGHRWIDYVDDLIFSNQQFSLPRWL--PSLKP---VFRSTSVIAQAEAVRAGF 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +LP ++     +LV ++ D I  + T +   P   +   ++KA  ++I
Sbjct: 235 GIGVLPCFLGSLGGDLVPVLPDQIDITRTFWLVAPPERRELARVKALWDYI 285


>gi|170732477|ref|YP_001764424.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|254245885|ref|ZP_04939206.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124870661|gb|EAY62377.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|169815719|gb|ACA90302.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 305

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 119/297 (40%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L  R  R  T+T+ G
Sbjct: 7   DLNDLYYFVQVVEHGGFAPAGRALDMPKSKLSRRIALLEARLGMRLIQRSTRRFTVTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +     +P G +R++  I L  +L+   +  F+   P ++
Sbjct: 67  QTYYAHCRAMLVEADAADEAIALLHEEPRGIVRVSCPIVLLDSLVGTMIAAFMAACPRVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S L  R L        A+P  L+    P  
Sbjct: 127 IHLEATNRRVDVVGEGIDVAIRVRPPPLEDSDLALRVLAERGQCLVASPALLREQGVPAV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +    +    +P+    +                       L++    V G GI 
Sbjct: 187 PADLARLP--SLDHGVPQSTHVWRLRGPDGAHAEIHHEPRFVTGGMLALRAAAVAGVGIV 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +V+D      LV ++ D       V+  +         ++A  +F+  +  +
Sbjct: 245 QLPTMMVRDEVSRGELVTVLPDWAPRREIVHAVFASRRGLLPAVRALLDFLAERFAE 301


>gi|323965229|gb|EGB60687.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|327254591|gb|EGE66207.1| putative transcriptional regulator [Escherichia coli STEC_7v]
          Length = 294

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +   V R GSFT AA++L L+QS +SR +  LE  +G++L  R  R L+LT+ G
Sbjct: 6   NYNELYLLMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L++ T+  +  L+     L      PSG +RI  +       L   L  F   YPDI+
Sbjct: 66  EQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +        +    L   D+ I         ++      +   LG G+A 
Sbjct: 186 TDLKAHPCIAYQFADGSVYQWE--LNQDDKKITHRPEGQWALSDSYMEAEAARLGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P  +V D+     L+R+++        ++  YP     +  L+   +
Sbjct: 244 VPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYPH-RNVSPALRMVID 290


>gi|254247455|ref|ZP_04940776.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124872231|gb|EAY63947.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 309

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT 
Sbjct: 1   MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  + +      +       G+L +     + + ++   L      +P 
Sbjct: 61  DGALLLERGRRLLAEADELDRLFRRRDRDVVGRLNVDVPSRIARRVVAPALPSLFRRHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P 
Sbjct: 121 LQLSLGSTDRSIDLVQEGVDCAIRVGR-LTDSSLVVRPLGQFTLINCASPDYLRECGVPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               L   H  I +    P    +  W    D       + S + VN+  + +  C+ G 
Sbjct: 180 HPDALAHGHWAIGYAS--PTTGRELGWEYCADGQRHTLTLPSRVIVNNAETYIAGCIAGM 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +P + V+    +  LV +M         V   YP     + +L AF  +
Sbjct: 238 GLIQIPRFDVEHLLASGALVDVMPGHRAEPMDVSAVYPHRRHRSRRLNAFIEW 290


>gi|330979517|gb|EGH78120.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 294

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 123/283 (43%), Gaps = 7/283 (2%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           +A  GSFT  A    + +  ++R I  LE  + ++LF R  R + LT +G + +      
Sbjct: 2   LAELGSFTKVAGATQVGRPHVTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFYERVKNN 61

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              L  T      +     G+LRI       Q     +LK F   +PDI++ L + ++ +
Sbjct: 62  LADLAETTSMFDRNGSTLRGRLRIDIPAAFSQRSFMESLKGFTRAFPDIELALGVTDRTV 121

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+  +  DCA+R+ + +  SSL+ R++    M   AAP YL+    P ++ EL  H  ++
Sbjct: 122 DLVAEGIDCALRIGE-LPDSSLVVREIGRATMVTCAAPSYLQAFGTPETLDELAGHCGVS 180

Query: 194 FGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK-- 250
           F  L  +      W  +++      P    + VN   + +Q  + G GI   P   V+  
Sbjct: 181 F--LSGQSNRPLPWHFSLNGDDFALPPRGGITVNESNAYVQCGLAGFGILQAPGIAVESF 238

Query: 251 -DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +  LV ++E        V   YP       +++AF  ++  
Sbjct: 239 LASGELVEVLEKFRPLPRPVSVLYPSRTHLAPQVQAFIAWLRE 281


>gi|330501828|ref|YP_004378697.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328916114|gb|AEB56945.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 295

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 127/283 (44%), Gaps = 7/283 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V   GS   AAE + ++ S++S+QI  LE   G+ L +R  R LTLTE G+
Sbjct: 4   LKRMALFATVVEKGSMVAAAEAMGMTASAVSQQIRRLEEATGVTLLHRTTRKLTLTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +    +  +  L E    P G+LR+A  +     LL   L   L  +P + +
Sbjct: 64  AFYESCRHIVELAQQAEQRLAEQRDAPVGELRVAAPVGFSGPLLCEALAPLLGAHPGLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+     D AIR+ +  ++SSL+ R +    M   AAP YL     P+  Q
Sbjct: 124 SLFFQDEQIDLVESRIDLAIRVGRQ-ENSSLVARHVTDWRMLLCAAPAYLARAGVPVEPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L   + I       + +          R   E RISC   N+ L+  Q+ + G G++L 
Sbjct: 183 QLLGLDWIGLHLERSQHLTLHGPSGAQQRLRLETRISC---NNILAARQFTLAGMGVSLQ 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           P+  +++      L+ ++ D    +  ++   P       K++
Sbjct: 240 PEPEIRELLARGELLSLLPDWQLEAIGLHIVTPRRDAQPAKVR 282


>gi|209517867|ref|ZP_03266701.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501700|gb|EEA01722.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 330

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 130/291 (44%), Gaps = 5/291 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             + +F   A  GS   AA    +S  + S  +  LE ++G++LF+R  R L++TE+G +
Sbjct: 5   RAITIFVRAATLGSLRSAAVDQGISPQAASHAVMQLEKDLGVRLFHRTTRKLSVTEEGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L          L +   E + S  +  G LR++    LG  +L    +EF  LYP++Q +
Sbjct: 65  LLDSVKPALATLSSALDEARRSKEEVGGVLRVSAARALGLPVLWPYFEEFQKLYPNVQFE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + LD++  D+  D +D   R   P  S   I R+LV I +   A+P Y++    P +I+E
Sbjct: 125 VQLDDQFTDLVTDRSDVGFR-GGPPPSGGSIARRLVPIQLIVCASPEYIERNGAPRTIEE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H    +       +  + +    D  +     + L VN      Q  + G GI  L 
Sbjct: 184 LAQHRCTGYRRANTGKLAQWQFRIG-DEVVYRDVPAALCVNDTEMETQAVLSGLGIGQLG 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +       +  L+ ++   +T    +Y  Y    + + ++K F +F+  +
Sbjct: 243 SFNATPHIRSGRLIPLLTRHVTEHGMIYIYYGHRTEQSLRVKTFIDFMVER 293


>gi|70728916|ref|YP_258665.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343215|gb|AAY90821.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 301

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 130/291 (44%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +++ F  V   GS+T AA+ L +S++  S  I  LE  +   L  R  R +TLTE G 
Sbjct: 11  LHRVQTFLAVVDFGSYTRAAQYLGISKAMASLHIKALEQALASTLLIRTTRQVTLTETGQ 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+     +   ++T    +     + SGKLRI++T +  +  +   L  F   YP++++
Sbjct: 71  ALYDEFKGIVANIDTAFDNVLHGRDRVSGKLRISSTAEYAETFVLPILPLFTARYPEVRL 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               ++   D+  +  D  IRL   +  S    R+L    +   A+P  LK+ R+    +
Sbjct: 131 SYHFNSSLNDLVAEKLDLVIRLGH-LADSGFKGRQLADYAIVLVASPALLKD-RQVTQPE 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ELD    I   +L       F+     +  +        + NS  +I    + G G+A+L
Sbjct: 189 ELDAWPWIGNSNLGGPPGWTFSHPRRGEVEVKV--SPGHESNSATAIRAMALAGLGLAVL 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P+++V D+     LVR++ +    +  V+  +P +     K + F +F+  
Sbjct: 247 PEWMVLDDLGNGRLVRVLPEYRLATQPVHVLFPNSAHLPRKSRVFIDFLAE 297


>gi|50119236|ref|YP_048403.1| putative DNA-binding transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609762|emb|CAG73196.1| putative temperature-dependent LysR-family regulator A
           [Pectobacterium atrosepticum SCRI1043]
          Length = 311

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   GSFT AA QL +S S++S+ +S LE E+ IKL  R  R + LTE G 
Sbjct: 4   LKSMSVFARVVECGSFTAAARQLQMSVSAVSQTVSKLEDELQIKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     + H+      +L   +  P G LRI ++  + QN+L       L  YP + +
Sbjct: 64  IYYHGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLSTMTAAMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q S+L  ++L ++ M   AA  YL     P    
Sbjct: 124 NLVTGIPAPDLIADGLDIVIRVGA-LQDSTLFSKRLGSMPMVVCAAKSYLAQHGTPDKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++  +G+GIA +
Sbjct: 183 DMVNFSWLEYSVRPDS---EFELIAPEGISTRVTPQGRFVTNDPQTLVRWLKIGAGIAYI 239

Query: 245 PD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +IV +     +  +     +    VY  Y        K++   N++  
Sbjct: 240 PLMWIVDEINRGEIEILFNRYHSDPRPVYALYTRKDNLPLKVQVCINYMTE 290


>gi|116049912|ref|YP_791279.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585133|gb|ABJ11148.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 311

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 133/299 (44%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E  +  + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +   R 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGHRL 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               ++L+    +  G +          +          R   L V+ ++   +  V G 
Sbjct: 181 -EHPEDLEDLPFL--GAIHNDRKVHATLIGPDGSRYQLEREPRLGVDDFVLRKKAAVAGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ LLP+        + +LVRI+     P  T+   Y         ++A  +F+    +
Sbjct: 238 GVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAYLPRSSQIPAIRALIDFLVEALQ 296


>gi|91779823|ref|YP_555031.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692483|gb|ABE35681.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 302

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 9/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L++F  VAR  SF+ AA +L +SQS  SR ++ LE E+G+ L  R  R +  TE+
Sbjct: 1   MDINQLKIFSRVARLKSFSGAARELSISQSQASRAVAELEQELGVSLLARTTRAVIPTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++       V  +LE  +  ++    +  G LRI      G   +   +  F  ++  +
Sbjct: 61  GTEYLARIEPVLDQLEDAEQSVRR--GELRGTLRIGMPTSAGVREIIPLIPPFAEMHAKL 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQ+IL ++  D+  D  D A+R+   +  S+   R L T      A+P YL+    P +
Sbjct: 119 SIQIILGDQKQDLVRDAVDVALRMG-TLPDSNATARLLTTYPRLIVASPGYLERFGTPGT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H+++            F+     +     P IS    N    ++     G GIA
Sbjct: 178 PSELQGHHVVHGPAGGVATAWTFSRDGADESIAVRPTIS---FNDNEGVVAATAAGMGIA 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  +  +   +   LVR++         VY  YP         +AF +++
Sbjct: 235 SIGLWACRRELEEGRLVRLLSGWDMVPTRVYAYYPLGKATRYPARAFIDYL 285


>gi|317403802|gb|EFV84281.1| LysR family regulatory protein [Achromobacter xylosoxidans C54]
          Length = 302

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 133/289 (46%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++ RVF  VA  GSF  AA  L L ++S+S  +  LE ++G +L +R  R + LT  G+
Sbjct: 4   FEQYRVFAQVAEMGSFIKAANALELPRASVSAAVQQLEAQLGARLLHRTTRQVRLTADGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +  ++E      Q+S  + SG+L +     + + L+   L   L  +P +Q+
Sbjct: 64  QLLERLRPLLSEVEDIDHLFQQSQRQVSGRLNVDVPSRIARRLVAPALPGLLRRHPRLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ ID+  +  DCA+R+   +  SSL+ R L  I +   A+P YL++   P +  
Sbjct: 124 ALGSSDRAIDLIQEGVDCAVRVGA-LHDSSLVSRPLGNIGLVNCASPAYLRDQGVPHAPD 182

Query: 185 EL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL   H ++ +          +  +A           S + VN+  S +  C+ G G+  
Sbjct: 183 ELPAGHWMVGYASPTTGRELPWEVVADDGGRRLIAVPSRVVVNNAESYIACCLAGLGLIQ 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +P + V+D      LV +M         V   YP   + + +L  F  +
Sbjct: 243 IPRFDVQDLLEAGELVEVMPAHRAAPMPVALLYPHRRQRSRRLAVFLEW 291


>gi|254469896|ref|ZP_05083301.1| LysR-family transcriptional regulator [Pseudovibrio sp. JE062]
 gi|211961731|gb|EEA96926.1| LysR-family transcriptional regulator [Pseudovibrio sp. JE062]
          Length = 301

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 131/289 (45%), Gaps = 8/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  VA++GSF+ AA+ LH+  S++SR++S LE ++G KL  R  R + LTE G
Sbjct: 3   DLNAIAIFAEVAKAGSFSAAAKNLHVPLSTVSRKVSELEAQLGTKLLERTTRRMRLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++               +++     SG L++    +L + L    + +F L YP+++
Sbjct: 63  EQFYKTCLPGLEAFRAADRVVEQRQSALSGDLKVTIPPNLAEALFIPVIGQFRLQYPEVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q+I+  +++D   D  D + R+  P   S L   KL T      A+P Y+     P   
Sbjct: 123 VQMIVSERNLDFIEDDVDLSFRVG-PKPDSGLTLTKLATYCHVLVASPTYIAEHGVPDHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L +H LI FG      +         +R I   P+I    +N Y ++      G GI 
Sbjct: 182 DKLPEHALIGFGFWQKPEVSWSLSRKNDERVIRFTPQIG---INDYAAMQSAIKAGLGIG 238

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP  + +D      LV ++ D   P   ++  +      +   + F  
Sbjct: 239 ELPSILCQDALAKRALVEVLPDWTFPEIDLHAMHTGKENQSRIARLFLE 287


>gi|170293878|gb|ACB13013.1| putative LysR family transcriptional regulator [Hydrogenophaga sp.
           PL2G6]
          Length = 302

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 120/298 (40%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  +   GS T AA+    S +S+ R ++ LE  +G +L  R  R L+LT 
Sbjct: 1   MDKLRAMATFVRIVDGGSLTAAADAAGTSLTSVVRSLAALEKSLGTRLLNRTTRRLSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        ++   ++     L E     SG+L +   +  G+  +      FL  +PD
Sbjct: 61  EGRDYAERCRQILAAVDEADAALSEQRSTLSGRLALTAPVTFGRMHVAPLAASFLKQHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+L ++ +D+  +  D A+R+   +  SSL+   L T+     A+P YL+    P 
Sbjct: 121 LSVELLLLDRVVDLLEEGLDVAVRIG-TLPDSSLVAVPLGTVRRVCCASPAYLRRHGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L KH  I F          F       R +  P       N   + M   + G G 
Sbjct: 180 EPRDLLKHRCIGFKGHGASADWRFQ---VAGRELKVPVRPVFVTNQVEAAMDAGIAGLGC 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             L  Y  +   ++  L  ++         V   Y      + +++A  +++    R+
Sbjct: 237 VSLLSYQARTGLESGALKAVLRGFEVDPLPVNILYRPDRLMSTRVRALVDWLIPSLRE 294


>gi|329119178|ref|ZP_08247867.1| LysR family transcriptional regulator [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464691|gb|EGF10987.1| LysR family transcriptional regulator [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 299

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  V + G+F+ AA+ L +  S++S +++ LE  +  KL  R  R ++ TE G
Sbjct: 6   NFNDLYAFTQVVKLGNFSRAAQSLGVQPSALSHRMNDLENRLNTKLLNRTTRSMSPTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+   + ++  ++     L +   K SG+LRI    +    L+   ++ FL  +P++ 
Sbjct: 66  QRLYERIAPMFGGIQEELAALGDLRGKVSGRLRINAAENPAYCLIYPKVRSFLAQFPEVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++ N   DI     D  +R    +    +         M   AAP YL    +P + 
Sbjct: 126 VEILISNSWSDIVAQGFDFGVRSLGDVAQDMVAVPISGERAMCVVAAPDYLTRHGQPETP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL +H  I         ++D  W    +  I   R+   L  NS   I    + G G+ 
Sbjct: 186 SELVQHRCIVPAFNAFNRLDD--WEFFQNGQIHRVRVPASLTFNSTALIKTAALDGLGLT 243

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LP Y V D   +  LV I  +       +   Y      T   +A   ++  +A
Sbjct: 244 WLPHYAVADELASGALVEIFSNARAVYPPMALYYLPNRHKTQAAEALIEWLKAEA 298


>gi|110635047|ref|YP_675255.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286031|gb|ABG64090.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 302

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 139/298 (46%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  VA +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  +LTE
Sbjct: 1   MDTLTRMRAFIQVADAEGFSAAARKSGRSKALLSKYVRELEDELGALLLNRTTRKFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   E+  +++     ++ES+    G+++++         +  +L +F   +P+
Sbjct: 61  AGGLYYQRALELVREIDALSETVRESASGIRGRIKLSAPRTFADAPIGQSLIDFATAHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + LD++ +D+  +  D AIR+ K +  SS+I R+L    +   A+P  ++   +P 
Sbjct: 121 ITLDIQLDDRFVDLVEEGFDLAIRITK-LDDSSMIARRLNPFRVLLCASPSLIEKYGKPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL     +   +   +    F        PI  P    ++ NS L++    + G G 
Sbjct: 180 HPRELQNLPCLIDTNSRYRHNWPFQ---EGGVPITVPVSGPIEANSPLAVRAAALAGLGF 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A +PD+I         LV ++++ IT    ++  YP       K++A  +F+    R+
Sbjct: 237 AFVPDFIAMAELKAGRLVTVLDEFITDGAGIFAVYPHRRYLPAKVRALVDFLAQWLRE 294


>gi|56413400|ref|YP_150475.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362323|ref|YP_002141960.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127657|gb|AAV77163.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093800|emb|CAR59280.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 301

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH  + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHYAVGY--LNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++  +    +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNH-SYDLPLALVYPQNRFLPPAVRAFYHW 289


>gi|220915698|ref|YP_002491002.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953552|gb|ACL63936.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 319

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 130/288 (45%), Gaps = 7/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L+VF  VA +G F  A  +L LS  +++R I+ LE  VG +LF R  R +  TE G 
Sbjct: 4   LHQLQVFVAVAEAGGFARAGARLRLSPPAVTRAIAALEGRVGARLFNRTTRTVRPTEAGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       V   LET + E       P+G L +  ++  G+  L   ++ FL L+P +  
Sbjct: 64  RFLEPARRVLADLETAEREAAGEGAAPAGHLTLTASVTFGRWALAPVVRAFLGLHPGVTA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L ++ +++  +  D A+R+ + +  S L+ RK+  I     A+P YL+    P S  
Sbjct: 124 SLVLVDRVVNLVEEGVDVAVRIGQ-LPDSDLVARKVGEIRRVLVASPAYLRAHGAPSSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H +I F  L       F       R +  P    L VN  L+ +     G GI L 
Sbjct: 183 RLRAHAVIAFTGLHAGREWRF---VDGGRQVAVPVAPRLVVNDALAALDAAEAGDGITLA 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y+V +      LV ++     P   V   +P A     K++AF +F
Sbjct: 240 LSYMVAERIAAGRLVPVLGRFAPPPVPVQLVHPHARLVAPKVRAFVDF 287


>gi|146282478|ref|YP_001172631.1| transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145570683|gb|ABP79789.1| probable transcriptional regulator [Pseudomonas stutzeri A1501]
          Length = 311

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R F  V  +GSFT AA Q   S + +SR +S LE  +  +L  R  R L LT
Sbjct: 1   MDM-LHAMRAFVRVVDAGSFTAAARQTDTSTAQVSRLVSELENHLHARLLQRTTRRLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++    + E+  +L+  + E   + + P G+LR+ +T  LG  LL G    +   YP
Sbjct: 60  EVGARFLERSREILAQLDDARQEACGAHLTPRGRLRVHSTTGLGIQLLSGLAGHYCERYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L L  +  D+     D  I L + +  S LI ++L  +     AAP YL+    P
Sbjct: 120 EVSLDLSLSQRQPDLLEAGLDVIITLSRDLPDSELIAQRLGPVFHVVCAAPSYLQRHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  +   D  P   +D++++      +  P     +VN   ++      G G
Sbjct: 180 RRPTDLHNHRCLRLLD--PVFADDWHFVGDGVEEVIRPG-ETFKVNVAEAMASAAEAGMG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I LLPDY+         L+R++         ++  YP       K++ + +F+    
Sbjct: 237 ICLLPDYVAAPALQRGTLLRLLPQYRLQEKQIHALYPSRRFLDAKIRTWLDFLAQAL 293


>gi|268592175|ref|ZP_06126396.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291312576|gb|EFE53029.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 304

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 130/290 (44%), Gaps = 10/290 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + +RVF  VAR  SF+ AA QL +S + +S++I  LE  +G  LF+R AR + LT +G
Sbjct: 6   SLEDIRVFVTVARLMSFSQAASQLLVSPAYVSKRIKLLEENLGQTLFFRTARSIKLTHEG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             + R +  +  +LE  Q +L     +  G LRI+ +   G   +   +      +P + 
Sbjct: 66  QIILRSSEVMLAELEQMQQQLNACREEIRGNLRISCSTGFGSTYINPFILTLRGSHPLLG 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +K +DI  +  D  I +   I +   I R++        A+P YL     P   
Sbjct: 126 IDLTLTDKSVDIISENIDVDICIGGTI-AEQFIARRIARNQRILCASPTYLATHGYPKYP 184

Query: 184 QELDK-HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           QEL++ H  I   +   +      W L      +     S L VN+     Q+C+ G GI
Sbjct: 185 QELEQKHFCIAIKE---RNQAPAVWKLEYQQESMTVTPNSKLTVNNGEVAKQWCLSGEGI 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            L   + V+    +  LVR++      +  VY  Y  +L+ +  L+ F  
Sbjct: 242 LLRSQWSVQPELQSGQLVRVLPQWHQ-TADVYAVYSRSLRTSANLRVFIE 290


>gi|54310460|ref|YP_131480.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46914903|emb|CAG21678.1| putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 305

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 128/299 (42%), Gaps = 19/299 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LR    +A+ GSF  AA  L +  +++SR++  LE  +G +L  R +R + LT  
Sbjct: 8   MKLDDLRALIAIAQHGSFRAAANALDIPPATLSRRLQRLEDTLGSQLVIRDSRNVALTPL 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G         +  +L+ T  EL + SS  P G LRI+  + L    L     +FL LYP+
Sbjct: 68  GQNYFERCQPLLDELQATTSELMDTSSSNPRGALRISAPVGLLTYQLMPLFNQFLALYPE 127

Query: 122 IQIQL-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + + L  L N+  D S +  D   R+ +   +SS    K+        A+P YL     P
Sbjct: 128 VTLSLNHLSNQHHDYSQEQYDVVFRVGQQ-PNSSFAAAKIGESQRTLVASPEYLAQYGIP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSIMQY 234
               EL+ H+ +         + +F W  T    +  P          + +    S+ Q 
Sbjct: 187 HHPDELNHHSRLA-------TVPEFEWALTCKTDVAHPETIWINSPVRMAIADLNSVKQA 239

Query: 235 CVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G GIA LP+Y+V D      L  +M+D  +P   +Y  Y         +  F +F+
Sbjct: 240 AISGLGIACLPNYVVADALEKSTLTTMMDDWYSPPRPIYMLYQRLGYVPNHITCFIDFM 298


>gi|87120816|ref|ZP_01076709.1| hypothetical transcriptional regulator [Marinomonas sp. MED121]
 gi|86164044|gb|EAQ65316.1| hypothetical transcriptional regulator [Marinomonas sp. MED121]
          Length = 287

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 129/288 (44%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GSF  AA +L+ S+S +S Q++ LE   G++L +R  R L LT +G K++
Sbjct: 1   MAIFVTVVEAGSFAAAARKLNSSRSRVSEQVAQLEAAAGMRLLHRSTRQLALTSEGEKVY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +   +     S  +PSG++ I+TT D+    L   L EF   YP +Q+ LI
Sbjct: 61  AKAKILPELIHEIEAV--ASPAEPSGRVAISTTHDIAIKHLIPVLNEFQRRYPKVQVDLI 118

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++ +D+  +  D AIR+  P    SLI R +       YA+P YLK    P ++ EL 
Sbjct: 119 ISDQKLDLIAEQIDIAIRIGLP-NDDSLIGRVMYEERSALYASPAYLKEHGRPKTLGELA 177

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +    +     +    L    +P+          NS L      + G GI+ L   
Sbjct: 178 QHKWVVISQMSQNGEQS---LIYQGKPVHINPAYYQLTNSPLVAQSLTLAGHGISTLLPV 234

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            VKD      LV I   V   S      YP   +   + +   +++  
Sbjct: 235 TVKDECKAGLLVPIGLGVSAFSAVFTLVYPSRKQVPARTRVLIDYLLE 282


>gi|26988583|ref|NP_744008.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24983357|gb|AAN67472.1|AE016374_4 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 312

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 124/300 (41%), Gaps = 5/300 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ + +  L  F   A  GSF  AA +L L+ +++ + ++ LE  +G++LF R  R LTL
Sbjct: 1   MAMESFSALECFIRSAEVGSFAEAARRLSLTPAAVGKHVAQLEARLGVRLFQRSTRKLTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +     S+ +  ++     L  +  +P+G LR++     G+  +   L EFL  Y
Sbjct: 61  TEAGQRFLGEVSDSFRTIQYAVANLASAEGQPAGSLRVSMGTVFGRLYVLPLLGEFLRRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I      DN+ +D+     D AI     +    ++ RKL   H    AAP YL+    
Sbjct: 121 PAITPDWHFDNRQVDLIGQGFDAAIGGGFELP-PGVVARKLTPAHRVLVAAPAYLQRHAS 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               Q L +H+ I         +  +   +             + ++   +       G 
Sbjct: 180 IEDPQALQRHDGILVRSPQTGRVRSWPLTSRWQAQQPLQLRQAMTMSDSDAACAVAEQGL 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIAL+             L+R++ D       +   + E     GK +AF +F+  +  +
Sbjct: 240 GIALVSLPFAVPYLLAGRLLRVLPDWYVDDGHISLYFAEHKLLPGKTRAFIDFVVEQFAE 299


>gi|332284339|ref|YP_004416250.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428292|gb|AEC19626.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 307

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 125/289 (43%), Gaps = 6/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  +  +GSFT A+E   L +S++SR+++ LE E+G +L  R  R L LTE G +
Sbjct: 9   NDLILFAYIVEAGSFTGASEHTGLPKSTLSRRLTDLENELGERLLQRSTRRLVLTEFGER 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +  + E      Q   + P G LRI+   +  +      L EF   YPD++++
Sbjct: 69  ILEYARRLQEETEAASALAQHRQMTPQGTLRISLPPEFYELSFVKVLVEFSQQYPDVRLE 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSS-LIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L L  + +D+  +  D AIR    +   S L+ R++ T+    YA+P YL N        
Sbjct: 129 LDLSPRRVDLVAERFDVAIRAATQLPDDSTLVARRITTLQNSLYASPGYLHNHGTLKHPA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  +       +  + +      +R  G P +  L  NS          G GI  L
Sbjct: 189 DLIQHVGLVLVTSAGE-QQQWRLSRGSERWEGLP-LRKLSANSLGLQQALSAQGLGIVGL 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +   +       L RI+ D   P   ++   P       +  AF + +
Sbjct: 247 SEGFAEKLVKQGVLERILPDWKLPPTNIWCVTPGRRLLPQRTIAFIDIL 295


>gi|318607238|emb|CBY28736.1| putative transcription regulator protein [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 308

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 124/294 (42%), Gaps = 6/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  +   GSF+ A E+L L ++++S  +  LE  +G++L  R  R + +T 
Sbjct: 1   MDQIQAMQIFVRIVELGSFSRATEKLQLPRATVSHTLKRLEQRLGVRLLVRTTRQVNITA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +    ++    E          ++P GK+RI     L +N++   L +F   YP 
Sbjct: 61  EGTLYYHRCLQLLSAFEEADSLFSHQRLQPEGKVRIDMPHSLARNVVIPALSDFYQRYPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L  ++  ID+  +  DC +R   P     L  R +       YA+P YL+    P+
Sbjct: 121 ITLILGANDSTIDLLREGVDCVLRAWLP-HDEQLAARNIGQQPQITYASPAYLEKYGIPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H  + +   +        ++    +       S L V+   + +   + G G+
Sbjct: 180 SLDDLAGHQAVGYFSQLNHRDYPLEFICQ-GKIENRVLPSILSVSGADAYIAAGMAGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P   ++       L+ ++  +  P   ++  YP       +++   +++  
Sbjct: 239 IQAPTAGIQGQLAQSELIEVLSHIPPPVMPLFIMYPPGRFLAPRVRVLIDWLIE 292


>gi|291037290|ref|ZP_06568254.1| transcriptional regulator [Gluconacetobacter xylinus NBRC 3288]
          Length = 298

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 12/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L +   +A +GSFT AAE L L +S++SR+++ LE  +   LF R  R L+LT
Sbjct: 1   MKPSLDDLALLVTIAEAGSFTAAAEALGLPKSTVSRRLADLELLLRTSLFRRSTRALSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +++ +              + E     +G++ + TT  LGQ L+  +L      YP
Sbjct: 61  DEGRRIYEMAQPSILAAGNAARAIAEREQLVAGRVSLTTTAALGQYLIAPHLVRLTADYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L L  + I+I  +  D A+R+   +  S LI R+L  +     A+P YL     P
Sbjct: 121 DLKVDLQLTERRINIIGESVDLAVRMGN-LGDSDLIARRLCMVRRLLVASPAYLAQAGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LS  +L  HN I     +     D  W   +   I           + L   Q   LG G
Sbjct: 180 LSPLDLAAHNAIVTSAGLDTWRFDGGWECVMRWNIA--------AGNMLVAHQLARLGHG 231

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA+LPD+++ ++     L +I+ D        +         +  ++   N +   
Sbjct: 232 IAMLPDFMIANDLKQGILCKILPDYPPEQADAWIVTSRQRYRSLAVQTVLNDLVEA 287


>gi|163742283|ref|ZP_02149671.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384613|gb|EDQ08994.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 324

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 128/299 (42%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRVSPAVTSARISQLEEYLGVRLFQRTTRNLTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++  + ++   +  P G L +A  + LG+ LL     EFL  YP
Sbjct: 60  EQGRAFYDGAVAVLDAVDVAEAKVMHLTDTPRGTLFVAAPLGLGRRLLAPQTPEFLATYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L L ++ +D++ +  D A  L +P + S+L  RK+        AAP Y+     P
Sbjct: 120 EINLRLRLSDRAVDLTSEGLDLAFFLGQP-EDSNLRIRKIADCQRVLCAAPDYVARRGMP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                L  + H+ +      P   E    L T + P         + +    +  + + G
Sbjct: 179 EDGAALLREDHDCLNL--RYPGASEFQWLLQTSEGPRRFAVSGRYECDDGDVLTDWALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+ L P + V ++     LV + E        +   Y        K + F  ++  + 
Sbjct: 237 EGVVLKPLFEVAEHLAAGRLVPVAEATPPVPVQLACLYTHRRHQDPKTRLFMEYMTARL 295


>gi|308050743|ref|YP_003914309.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632933|gb|ADN77235.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 293

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 131/301 (43%), Gaps = 15/301 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L+ F  V  +GSF+ AAE L L  + ISR ++ LE ++G  L  R  R L LT
Sbjct: 1   MKTRSDDLQCFLAVVDAGSFSAAAEALDLQVARISRAVTRLEQQLGTTLLNRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+           +L+  +  + + + +P G+LR+       Q+ L  +L  F   YP
Sbjct: 61  EEGATFADAVRAGLAQLDAAEEAVAQVAGRPVGRLRVDAASPFIQHQLLPHLAAFRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L      ID+     D AIR+   +  S+L  R L    +H  AAP YL     P
Sbjct: 121 EIRLELSASEGIIDLLEKRIDVAIRIG-TLSDSTLHARPLGRSALHLVAAPDYLARQGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+  LD H+L+ F                   P   P    + V++   + +  + G G
Sbjct: 180 DSVDALDGHSLLGFIPPSRLNQWPL--------PGTAPIRPAVAVSNGELLRRMALDGHG 231

Query: 241 IALLPDYIVKDNPNLVRIME------DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L  ++V  +    R+M       + +     V   + +      +++ F +FI  + 
Sbjct: 232 IACLSHFMVAQDLEAGRLMPVLGEALEPLAERERVNAVFYQNSVLAERIRVFLDFIQPRL 291

Query: 295 R 295
           R
Sbjct: 292 R 292


>gi|296161973|ref|ZP_06844773.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887849|gb|EFG67667.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 303

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 130/294 (44%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + +   ++  V R  SFT A+E L +  S++SR+I+ LE  +GI+L  R  R L LT
Sbjct: 1   MDINLNDTAIYVEVVRRQSFTRASEALDIPASTLSRRITELEHAIGIRLLNRSTRRLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  +     +  +L     E+ E +   +G LRI+    L Q LL   ++EF   YP
Sbjct: 61  EAGAIYYEHCRRLIDQLRLAHEEIVEMNGSLTGTLRISLPDGLAQMLLPSMMREFGRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I     + N+ +D   +  D A+R  +      L+  +++ +    YA+P YL     P
Sbjct: 121 RITCDFHMGNEILDSISNTFDLALRFGRQ-PDYELVAHRILMLPSELYASPAYLAERGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ ++L +H  +   D   +   +   L              +  +    +      G G
Sbjct: 180 VTPEDLVEHECLRISDSQDRSTWE---LLNGVGAKHIDVTGRMTASHAGGLAHLASAGLG 236

Query: 241 IALLPDY-IVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP + +++ N     LVRI+ D       +Y   P +     K +AF +FI
Sbjct: 237 IAPLPAFDMMRRNVRAAGLVRILPDWSLAPIPLYALLPTS-SVPAKTRAFLSFI 289


>gi|34496036|ref|NP_900251.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34101890|gb|AAQ58257.1| transcriptional regulator, LysR family [Chromobacterium violaceum
           ATCC 12472]
          Length = 297

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 8/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  +  +GS + AA+++ +  ++++R++  LE E+G KL  R AR L  T +G 
Sbjct: 2   LDDLDLFVAIVDAGSLSAAAKRMAMPAATLTRRLQALEAELGCKLLNRSARRLVPTNEGW 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +   L      L  +  +  G +R    + +  +LL    +  L  +P +++
Sbjct: 62  QYYEQCKPLLAALRQAADSLDATLNRVEGVVRAMAPVSMANSLLLPVWQRLLQRHPAVRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L N   D+     D AIR+  P   S L QRKL  +     AAP YL+    P + +
Sbjct: 122 ELVLSNGTEDVWAMGGDLAIRVG-PQPDSQLNQRKLGQVSAVLAAAPSYLEARGRPQAFE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+L+    L    +   +     D     P  + L VN  L  ++    G G+ L 
Sbjct: 181 QLAGHDLLLTTPLQNWKLHRVDG----DEERSLPDGARLLVNDMLLGVRMAEAGCGVVLC 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P         +  L RI++D   P   VY  +P+      +++A  + +   A +
Sbjct: 237 PLSQCHRELADGRLERILQDWWIPPRPVYAVWPQRRAMPARVRALLDILLEFAAE 291


>gi|254241505|ref|ZP_04934827.1| hypothetical protein PA2G_02203 [Pseudomonas aeruginosa 2192]
 gi|313107980|ref|ZP_07794149.1| putative ranscriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|126194883|gb|EAZ58946.1| hypothetical protein PA2G_02203 [Pseudomonas aeruginosa 2192]
 gi|310880651|gb|EFQ39245.1| putative ranscriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 323

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 131/297 (44%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R F  V   GSFT AA+ L  S +++SRQ++GLE  +  +L  R+ R + +T
Sbjct: 1   MDL-LHGIRTFVRVVEHGSFTQAAQALGTSPATVSRQVAGLEQALSARLLQRNTRSVVVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +    ++   +     ++++S    SG+LR+    +LG   L   L ++L  +P
Sbjct: 60  ESGLRYYEHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L L      +  +  D  I L + +  S+L+ R L  +     AAP YL     P
Sbjct: 120 DVSVDLTLAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L +H  +      P C + + +       + +     L+VN   +       G G
Sbjct: 180 RTPEDLLRHRCLNVA--APSCPQGWAFAGERGETLLD-LDEALKVNLPEAACAAAAAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + LLP ++        +L+R++         V+  Y        K++ + +F+  + 
Sbjct: 237 VCLLPGFVAARALQEGSLLRLLPGHRLHVREVFVLYSSRRYLDAKIRTWVDFLRERL 293


>gi|172065391|ref|YP_001816103.1| MarR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997633|gb|ACB68550.1| transcriptional regulator, MarR family [Burkholderia ambifaria
           MC40-6]
          Length = 410

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 134/293 (45%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              ++ +F  +A  GS + AA  L+LS S++S+ ++ LE  +G  L  R  R LTLT+ G
Sbjct: 74  SLTQMTIFVRIAELGSLSAAARDLNLSPSAVSKSLAQLEDRLGTLLIKRTTRSLTLTDAG 133

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +      +   +ETT    +E    P G LR+  ++  G   L   L  +L  +PD+ 
Sbjct: 134 RAIFARAGAILTDIETTLDVAREG-QLPEGILRLTCSLAFGCKQLTPVLGRYLGAHPDVA 192

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             + LD++  +++ +  D A+R+      S    RKL TIH    A+P Y++N  E  + 
Sbjct: 193 ATIALDDRLANLAEENYDIAVRITAN-TDSGYAARKLATIHWVYCASPRYVENHAEICAP 251

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +  +       F      D+       + L  NS L++ +  + G G+A 
Sbjct: 252 DDLMNHTCLVYPAMTVNGAWTFR---QHDQIRHIQVDARLTSNSSLALREAAIDGLGVAC 308

Query: 244 LPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP Y+V  +    +L  ++       S T+Y  Y  +      +++F +F+  
Sbjct: 309 LPTYLVSADIIRGDLKLVVPQYKAAISHTLYAMYYRSKYANALIRSFIDFVVA 361


>gi|146294309|ref|YP_001184733.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145565999|gb|ABP76934.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 302

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 15/297 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA  GSFT AA+ L LS+  +SR I  +E  + ++L +R  R ++LT QG + 
Sbjct: 6   AIRSFVEVANCGSFTKAAQHLDLSRLQVSRHIQEIEQWLNLRLLHRTTRSVSLTLQGEET 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ L+P + IQL
Sbjct: 66  LQYCQRLLSEVAAMESRAHSHNTELVGSIRIATPIGLGQHSLFDVVDRFIKLHPKVNIQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +    +  +  D A+R  +     +LI R+L+ I     AAP YL N        +L
Sbjct: 126 AMSDSFAQLVDERVDVALRYTEQ-PDENLIARRLMMIDAVVCAAPTYLANTSPLNEPIDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN +             +W    ++     +++  L+ N    ++   + G GI  LP
Sbjct: 185 LTHNCLVH-------TAQHSWHFLKEKQSEVIKVTGNLKANDMGVLVSAALRGHGIVRLP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +      +  L  ++ D   P  T++  Y         ++AF +F    A+ W+ 
Sbjct: 238 CDLANQYLASGQLQEVLPDFTAPGQTLWAVYLSRSYQQMLVRAFIDF---TAQQWQL 291


>gi|229589552|ref|YP_002871671.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361418|emb|CAY48293.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 311

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 141/294 (47%), Gaps = 9/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  V R   F  AA++L LS + +S++I  LET +  +L +R +R + LTE G +
Sbjct: 19  EDLRVFLTVIRKAGFAAAADELGLSPAYVSKRIQILETTLATRLLHRTSRRIALTEDGER 78

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           + R    +    +    EL ++   P G+L I +T   G+N +   L      YPD++I+
Sbjct: 79  VQRWAVHILEDFQQLSDELSDAHDSPRGRLHICSTFGFGRNHVAPALSLLAEQYPDLEIR 138

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +DI  +  D  IR+   I     I R+LV+      AAP YL+    P  + +
Sbjct: 139 LDLLDRVVDIVSEGFDLEIRVGDDIPGQH-IGRRLVSNRRVLCAAPAYLQRRGTPHQLSD 197

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L++H+ +   +   +      W    D      R+   L  N+   ++Q+ + G G+ L 
Sbjct: 198 LEQHDCLVLKE---RDNAFGIWNLEHDGAQESVRVRGPLSSNNGEIVLQWALDGRGVLLR 254

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             + VK   +   L++++    T S  V+  YP  L  +GKL+A   F+    +
Sbjct: 255 SMWDVKPLLEQGKLMQVLHGY-TQSANVWAVYPTRLAYSGKLRACVEFLQAHFK 307


>gi|99082087|ref|YP_614241.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038367|gb|ABF64979.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 310

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA    F   A ++ LS  S +R I+GLET++G +LF R  R L LT+
Sbjct: 1   MDRIQSMQVFVAVAEEEGFAAGARRMGLSAPSATRAINGLETQLGARLFTRTTRRLHLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L+      + ++  P G LR+    + G+  +   L ++L  YPD
Sbjct: 61  VGQRYLEDVRHILTSLQAADDTARGAASAPVGLLRLTCPNEFGRIYILPILLDYLDHYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +L+L ++ ++I  +  D A+R+   + SS+L   K+  +     AAP YL+    P 
Sbjct: 121 MRAELVLLDRVVNIVEEGFDVALRIGH-LPSSTLSAVKVGAVRRVLCAAPAYLERYGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H ++    +         W     + I       L V++  +       G G+
Sbjct: 180 TPADLSAHRIVAVNVISSAT----EWRFGAQQEIAVRIAPQLCVSTVAAGRDAAREGWGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y    +    +L  ++ED    S  ++  + E  +   K+++F +F   + R
Sbjct: 236 CRMLSYQAGRDVAEGHLTCLLEDYEPESMPIHLVHTEGRRAPAKVRSFIDFARDRLR 292


>gi|182677306|ref|YP_001831452.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633189|gb|ACB93963.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 299

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 126/291 (43%), Gaps = 8/291 (2%)

Query: 3   FDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  +   GS T AA  L +SQ ++S+ +  LE   G +L  R+ R +  T 
Sbjct: 1   MDLSTALRAFVRIVERGSMTAAATDLGISQPAVSKLLRNLEEHTGARLIERNPRAMRPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+         +++    ++       G LR+     +G+  L   + EF   Y  
Sbjct: 61  QGLALYEAAGSALAVIDSAIESVRSDVGAIRGNLRLHGPTCIGERHLHQIVAEFQDRYAA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++LIL+N+ +D+  +  D A+R+ +P+   +LI R++        A+P YL+ C    
Sbjct: 121 VTVELILENRTVDLIHENVDLALRMGRPV-DQNLIMRRIGLSRRILVASPEYLERCGPVR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H+++     +   +     L   ++ I       L  N+   ++     G GI
Sbjct: 180 VCEDLSGHDMVVTNASLSGGVLP---LHKGNQKIEISVRPRLITNNAQVLVGALRTGKGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                 +V D   N +L+R++ +        +  YP +      ++AF +F
Sbjct: 237 GTAQVLLVADELKNGSLIRVLPEYEIEPTEFFLVYPSSKFLRPTVRAFVDF 287


>gi|296136479|ref|YP_003643721.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
 gi|295796601|gb|ADG31391.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
          Length = 302

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 119/292 (40%), Gaps = 5/292 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D+++L  F  +AR  SF  AA++ +++ SS+S  +  LE  +G++L  R  R + LT
Sbjct: 1   MHADFNELACFAAIARLRSFRKAADERNVTASSLSHTMRSLEERLGVRLLNRTTRSVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + GS+L      +   +     +         G LR+      G+ LL   +  FL  +P
Sbjct: 61  DAGSQLLSRIEPMLAGISEALDQTHSLGSSLKGTLRLNVPRPAGRVLLAPIMDGFLRDHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +  I+LI D+  IDI     D  +R  + +    +         +   A+P Y+      
Sbjct: 121 ETVIELITDDGIIDIVQTGFDAGVRFGESVALDMVAVPIGPAQRLVLVASPAYVSKTGPI 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +   I  G   P  +            I    +  L ++    +++    G G
Sbjct: 181 RHPEDLKQRACI--GRRFPSGLHYAWEFEKDGEKIAVRVVGPLVLDDDDMMVKAAAGGIG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            A + +   K   D+  L R ++D      + +  YP     +  L+AF ++
Sbjct: 239 YAYVHESTAKSLLDSGQLARSLDDWCPFIPSFHLYYPSRRHVSTVLRAFIDW 290


>gi|330821977|ref|YP_004350839.1| Transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373972|gb|AEA65327.1| Transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 344

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 122/274 (44%), Gaps = 6/274 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  ++E     L
Sbjct: 27  RELGLTPAAVSKRLAQMEQRAGVALVNRTTRRMALTPEGEVYLERARRILDEIEQLGELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             S+ +P G LR+  T+  G++ +   +  +   YP++++QL L      ++ D  D  I
Sbjct: 87  SRSNDRPRGLLRVNATLGFGRSAVGPAISRYARRYPEVEVQLQLSVTPPPLTDDSFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL-IPKCME 203
           R  +P   + ++ R+L        A+P YL     P    +L +HN I          + 
Sbjct: 147 RFGEP-PDTRVVARRLAPNRRLLCASPAYLAERGMPRKPADLARHNCIGIRQGDEAYGVW 205

Query: 204 DFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
                    R     RI   L  N     +++ + G GI +  ++ + D   +  LV ++
Sbjct: 206 RLTQARGAARATEAVRIGGSLTTNDGEIAVKWALDGHGILMRAEWDIHDYLADGRLVLVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               TP+  +Y  YP  L+ + ++++F +FI  +
Sbjct: 266 PGYETPAADIYAVYPRRLQMSARVRSFVDFIAGE 299


>gi|322832777|ref|YP_004212804.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167978|gb|ADW73677.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 311

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 127/290 (43%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D ++ F  +  SGS + AA QL  SQ ++SR++  LE  +G KL  R    + LT+ G 
Sbjct: 12  IDLMQTFVRIVESGSLSAAAAQLSTSQPTVSRRLQSLERLLGAKLILRTTHAMKLTDDGQ 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +  +  + + +L  +  +P G LR+      GQ+ L   L  +L  YP++ +
Sbjct: 72  RCYEQAKLLLERWVSLEDQLSGAGDEPVGTLRVRAPHAFGQDQLIAPLTRYLQRYPNLSV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +L+++  D   +  DCAI++   +   S++   L  +     A P  L+       + 
Sbjct: 132 DWMLNDRTPDFISEDIDCAIQVGN-VADPSMVAILLAEVPRIVVATPELLRQHPV-TRVS 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243
           EL K   I+F         +F      D  +    I+  +  +S  ++ +  + G G  +
Sbjct: 190 ELAKLPWISFSTYYRN---EFTLKHDNDGRMESCNIAPRMATDSLYAMRKAALSGLGAGI 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +IVK++     L R++         VY  YP +     +L+ F   +
Sbjct: 247 VSAWIVKEDIAEGRLQRVLPGWNALPLPVYLVYPYSSYYPARLRKFLEMM 296


>gi|209516286|ref|ZP_03265143.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503222|gb|EEA03221.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 318

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/291 (20%), Positives = 139/291 (47%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  +  + SFT AAE L++ +++ +  +  LE  +G  L  R  R L++T +G+  
Sbjct: 7   AMRTFIRIVDTNSFTRAAESLNIPRATATTIVQNLEALLGTALLVRTTRRLSITPEGAAY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +++   L+  +  ++ S+   +G+LRI     +   ++  +L +F   YP++ + +
Sbjct: 67  YERCAQILADLDEMEASIRNSTDNLTGRLRIEMPSAVASAIVLPSLDDFHTRYPNLDLAI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+ +D+  +  DC+I+L + +  S+L+ R+L ++     A+P YL     P  + EL
Sbjct: 127 GVSNRTVDMVSEAIDCSIQLGE-LPDSNLVARQLGSLDQITCASPAYLDRYGSPADLDEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLP 245
             H  +    + P    + ++   VD    + +++   QV+   + +   + G G+ + P
Sbjct: 186 RAH--VAVNCVSPHSGRECDFDFEVDGEARKVKLNGFVQVSDEQAYLTCGLQGLGM-IQP 242

Query: 246 DYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             I      D+  L  ++         V   Y +  + + +++AF +++  
Sbjct: 243 ARIAAQPYLDSGLLREVLPQWKPVPMPVSVAYVKNRRVSPRVRAFVDWLAE 293


>gi|123443074|ref|YP_001007048.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090035|emb|CAL12898.1| LysR family transcription regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 304

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 126/299 (42%), Gaps = 7/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +  L VF      GS + AA +L+++ ++ S  +  LE+++G++L  R  R L LTE+
Sbjct: 2   ISFSDLDVFVRTVDCGSLSEAARRLNITPAAASIAVKRLESQLGVRLLVRSTRSLRLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G             L   +  +Q      SG L+++   D G+NLL   L +F   +P I
Sbjct: 62  GISYLDSARIALGALIEGEQAIQRKMTGLSGVLQLSAPSDFGRNLLVNWLNDFKQQHPHI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPL 181
           Q+ L+L+++  D+  +  D A+R   P   SSL+   +++ H     A+P YL     P 
Sbjct: 122 QLHLLLNDRHADLFREPVDIALRFGVP-TDSSLVALPILSHHRRMLCASPAYLARNGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + +        +    L   D             +      ++ + G GI
Sbjct: 181 TPAQLVNHQSVLYQRNGRLYNQWR--LMRQDDIQEVTMSGEYISDDGEIARRWALAGLGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A      V  +     LV+++ D       +    P   + + +++  + F+  + R+W
Sbjct: 239 ANKAAIDVIADIRAGRLVQVLPDWQGEILPLNLLCPHRSQVSERVRGLQTFLQQRCREW 297


>gi|325524915|gb|EGD02852.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 306

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 136/296 (45%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F      G+F+  A +  L Q +IS+ ++ LE ++G++L  R    L  T+
Sbjct: 1   MDSLRSMHLFVRAVELGNFSAVAREEGLGQPTISKIVAALEKDLGVRLLERSTTSLAPTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     +  +      +++  + +P GKL +   + LG+  L   + EFL +YP+
Sbjct: 61  EGRRFYERCKRLLDEYAGAVADVRGLTQRPVGKLVVNAPMGLGELRLNALMLEFLAVYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L L ++ ID+  +  D AIRL   +    ++ R +        AAP YL    +  
Sbjct: 121 IEVELHLTDRVIDLIEEGVDVAIRLGHVLP-PDVVARSIAVSPRLLVAAPQYLSRAPKIR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H+ + +         +  ++   +R +  P  S  +VNS L++ +  + G+ +
Sbjct: 180 KPGDLARHDYVGYARA--GVGAELEFVRGTER-VAVPVRSRYRVNSSLALRECFLAGNAV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              P ++V+   D   LVR++         T++  Y        + +AF  F+  +
Sbjct: 237 GSGPAWLVQDLIDTGRLVRLLPKWDMALPHTLHLVYASRRYLPLRTRAFLQFMEER 292


>gi|241761202|ref|ZP_04759290.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374109|gb|EER63606.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 315

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 135/295 (45%), Gaps = 8/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L  F  VAR  +F+ AA++L +S S++S+ I  LE  +G+ LF+R  R + LT+ G+
Sbjct: 6   LDGLVAFVCVARLANFSSAAQRLGVSPSAVSQSIRALEQRLGVMLFHRTTRSVNLTDAGA 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +          +L +   ++ + S  PSG LR+          L+  L++FL  YP++++
Sbjct: 66  RFLARVQPAVDELISASTDVGDDSGPPSGLLRLIMPRSGYLLALRPLLRDFLEAYPEMKM 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +DN  +D+S    D  IR    ++          ++  +  A+P Y+         +
Sbjct: 126 EIAIDNTMVDLSSHGFDAGIRFGGFVEKDVTSVNIGPSMRWYVVASPEYVAKRGIARHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI--- 241
           +L  H  I F     + ++ +N+    +  +       L +     ++Q  + G G+   
Sbjct: 186 DLLGHECIKFRRTSGEIIQRWNFTNKNENLMINID-GRLVLGDLAVMVQAALDGLGVIYT 244

Query: 242 --ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               +  +I  ++  LVR++ D   P+  +   YP   + + K+K   +++   A
Sbjct: 245 VNGYVERFI--EDGRLVRMLADWSPPTSGLVLYYPAKPRISRKVKVLIDYLQEHA 297


>gi|170748136|ref|YP_001754396.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654658|gb|ACB23713.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 299

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 11/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F  V R+GS T A  +L LS + +S+++  LE  + ++L +R  R +  T+ G+  
Sbjct: 6   DLEIFARVVRTGSLTQAGSELGLSVAVVSKRLKRLEERLAVRLLHRTTRRVAPTDVGAAF 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +   +   +  + +++ +  G LR+      G+  +  +L+ F  L+P I + L
Sbjct: 66  FERIAPIVDAIAEAESLVSQTATRARGTLRVTAPSSFGRLHIVPHLRAFFALHPGIVLNL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +    I     D AIR+   ++SS L   +L  +     A P YL     P S+++L
Sbjct: 126 ELSDDFESIVERGYDLAIRVGA-LESSGLTAVRLAPVQRVLCARPSYLDAAGRPQSLEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +   +  P        L   + P        L+ +S   + +  + G GIAL   
Sbjct: 185 RGHVCLATENQNPWR------LVGPEGPCTVGASGPLRTHSNEVVREAVIGGLGIALRST 238

Query: 247 YIVK---DNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + V     +  L  ++       S  ++  YP       K +AF  F+    R
Sbjct: 239 WDVHAELRDGLLEVVLPAYAAAASAGIFAVYPSRAFVPAKTRAFIAFLKQAYR 291


>gi|323526075|ref|YP_004228228.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323383077|gb|ADX55168.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 329

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 118/293 (40%), Gaps = 11/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + + A  +  LS +  S +++ LE  +G +L +R  R ++LT+
Sbjct: 29  RLDLLDVALFVRAALLANVSAAGREFGLSAAVASSRLAHLEKLLGARLLHRTTRRISLTQ 88

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +       +  +     +P G+LR++     G+  +   + EFL  YP 
Sbjct: 89  DGEVFMTRAEALLDAAAAARASVGRGQAEPQGRLRVSMPSSFGRQHVSPVISEFLRRYPG 148

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ ID+     D AIR+   ++ SSL+ R+L        AAP YL     P 
Sbjct: 149 VSVDLRLADQVIDLVDAGIDVAIRVG-VLKDSSLVARRLAVNRRVLCAAPSYLAERGTPR 207

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +   D      E      T   P+       +  ++   I    + G GI
Sbjct: 208 HPSDLTQHECMILSDQRDWAFE------TPAGPLDVRVSGRIVTDNGEVIRDALLAGFGI 261

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           AL   + V     +  LV +++         ++  YP       K  AF +F+
Sbjct: 262 ALKSTWDVAPFLRSGELVSVLDSYPLAEKVAIWAVYPSRAFVPPKTLAFIDFL 314


>gi|269961730|ref|ZP_06176090.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833513|gb|EEZ87612.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 301

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 145/296 (48%), Gaps = 9/296 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT 
Sbjct: 4   KVNLADIRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLTRTTRTLRLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G + ++   +  H ++   I   + + +  G +R+      +G++++   + EF+L YP
Sbjct: 64  AGERFYQECEKALHDIDQALIAAVDDTQEVRGLIRVNCVGGYIGEDIIAKYVNEFMLEYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L   +  ID+  D  D AIR+ + ++ +  + RKL+ I M   A+P YLK   EP
Sbjct: 124 NITVDLDFSSPRIDLIEDQFDVAIRMGE-LEDAGFVARKLMMIDMVTLASPRYLKTYGEP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ +EL KH  +T           +  +A             L+  +  +++   + G+G
Sbjct: 183 VTPKELAKHRTLT----GSVTRWSYRNVANPKEHSDVIVKGNLRCKNGRALVMGALHGNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P     +      LV++M +   PS  +   +        +L+ F +F+  K
Sbjct: 239 IIRVPLSYCDEEVEQGQLVKVMPEWEIPSVPLSAIFHRDRYQPKRLRTFIDFVKTK 294


>gi|227820037|ref|YP_002824008.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227339036|gb|ACP23255.1| putative transcriptional regulatory protein, LysR family
           [Sinorhizobium fredii NGR234]
          Length = 303

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 129/294 (43%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VA +GSF+ AA  L L+Q ++SRQ+S LE  +  +L +R    + LT +G ++
Sbjct: 6   ALRTFLRVAETGSFSAAAVDLDLTQPAVSRQVSALEAHLNTRLLHRTTSAVALTAEGEQV 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +   V   ++             SGK+R+     LG   +   L   L  +P + +++
Sbjct: 66  IPMALRVVEAVDALGETTCAEGASVSGKVRLTLPAPLGLY-VSDRLTGLLANHPGLSVEM 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I   +  D+  +  D  +RL  P+  SSL+ R+L         AP YL+    P +  +L
Sbjct: 125 IFREEPSDLVGEGLDLEVRLG-PVADSSLVCRRLGWTTAFLVGAPSYLRERVAPETPNDL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
             H  I +     +  +   W  +        RI+  L  N+ +++ +  + GSG+A+L 
Sbjct: 184 RAHECICYS----RAGDARTWSFSDGADEVSVRIAPRLIANNAVAVHRATLAGSGLAVLS 239

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +V  +     LV +M D       +   YP       +++   +F+    R+
Sbjct: 240 HILVCPDIEAGRLVNVMPDFPPTRLPINVVYPSRRNMPPRVRVALDFLVEAVRE 293


>gi|253990745|ref|YP_003042101.1| LysR family transcriptional regulator [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211639076|emb|CAR67688.1| Transcriptional regulator, LysR family [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782195|emb|CAQ85359.1| Transcriptional regulator, LysR family [Photorhabdus asymbiotica]
          Length = 305

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 133/285 (46%), Gaps = 8/285 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF ++   GS   A+E+L +S++ +SR ++ +E   G++L +R  R ++LT  G  +++
Sbjct: 9   QVFTIIVEQGSMIAASERLDMSRAMVSRYLAEMEKWAGVRLLHRTTRKISLTSAGEIVYQ 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            + ++    E   +     + + SG +RI+++  L  + L   + EF+ +YP I I + +
Sbjct: 69  HSRKLLQLSEEIPVHQPVEAQELSGLVRISSSQSLAMSALSVAIPEFMQIYPQIAIDMQM 128

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            NK I++  +  D A+R+   ++  +LI R L T H    AAP YL     P    +L  
Sbjct: 129 SNKAINLVEERIDLALRITNNLE-PNLIARPLSTCHSVVCAAPSYLTGKMIPQKPADLAL 187

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                       P    L  N  + +M+  + G+GIA+ P Y 
Sbjct: 188 HNCMTYNFFGKSLW----LFERQGEKYSVPVSGILSANESVVLMEATLQGAGIAMQPYYS 243

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           V     +  L+ ++ +    +  +Y  Y         L+A  +F+
Sbjct: 244 VASHLASGKLIHLLPEYQPQAMGIYGIYASRQNMPATLRALLDFL 288


>gi|36958597|gb|AAQ87065.1| possible transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 307

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 129/294 (43%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VA +GSF+ AA  L L+Q ++SRQ+S LE  +  +L +R    + LT +G ++
Sbjct: 10  ALRTFLRVAETGSFSAAAVDLDLTQPAVSRQVSALEAHLNTRLLHRTTSAVALTAEGEQV 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +   V   ++             SGK+R+     LG   +   L   L  +P + +++
Sbjct: 70  IPMALRVVEAVDALGETTCAEGASVSGKVRLTLPAPLGLY-VSDRLTGLLANHPGLSVEM 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I   +  D+  +  D  +RL  P+  SSL+ R+L         AP YL+    P +  +L
Sbjct: 129 IFREEPSDLVGEGLDLEVRLG-PVADSSLVCRRLGWTTAFLVGAPSYLRERVAPETPNDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
             H  I +     +  +   W  +        RI+  L  N+ +++ +  + GSG+A+L 
Sbjct: 188 RAHECICYS----RAGDARTWSFSDGADEVSVRIAPRLIANNAVAVHRATLAGSGLAVLS 243

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +V  +     LV +M D       +   YP       +++   +F+    R+
Sbjct: 244 HILVCPDIEAGRLVNVMPDFPPTRLPINVVYPSRRNMPPRVRVALDFLVEAVRE 297


>gi|317054433|ref|YP_004118458.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952428|gb|ADU71902.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 302

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 131/292 (44%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V  +G+FT AA+ L +  +++S+ +  LE  +GI+L  R  R +T+T +G   
Sbjct: 6   AIRAFARVVEAGNFTRAADSLDMPNATLSKLVQELEAHLGIRLLQRTTRRVTVTAEGRDY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   LE         S +  G LRI       +++L   L +FL  YPDI+I L
Sbjct: 66  YEKALRIVRDLEDIDASFNVVSSRLRGHLRIDVGGSTARDVLIPALPDFLARYPDIRIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+  D  DC IR   P+  SSLI R +    M   A P YLK    P    EL
Sbjct: 126 GVSDRAVDLISDNVDCVIR-GGPLSDSSLIARHIGDATMITCATPGYLKAFGVPAYPDEL 184

Query: 187 DK-HNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
              H LI++          F ++   ++     E RI   + N++L+     +    I  
Sbjct: 185 KNGHRLISYLSSQSGRPFPFRFMRDGEKTEIKTEHRIGVNESNAHLAAALAGLG---IIQ 241

Query: 244 LPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              Y     + +  LV I++     ++  +  YP+    T +L+ F +++  
Sbjct: 242 TFTYATAEAQHHGALVEILQPWRPAAYPFHVVYPQNRHVTQRLRVFIDWLIA 293


>gi|167585738|ref|ZP_02378126.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 305

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 123/293 (41%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  VA  GSF  AA  L + ++++S  +  LE   G +L +R  R + LT 
Sbjct: 1   MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLEAGFGTRLLHRTTRQVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  + +              G+L +     + + ++   L      +P 
Sbjct: 61  DGALLFERGRRLLAEADELDRLFHGRDRDVVGRLNVDVPSRIARRVIAPALPSLFRRHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P 
Sbjct: 121 LQLSLGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFVLINCASPGYLRECGVPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               L   H  + +    P    +  W    D    +  + S + VN+  + +  C+ G 
Sbjct: 180 HPDVLAHGHYAVGYA--APTTGRELPWEVCGDGTTRQFALPSRVIVNNAETYIASCIAGM 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +P + V D      LV +M         V   YP     + +L AF  +
Sbjct: 238 GLIQIPRFDVADLLAGGALVEVMPGHRAAPMDVSAVYPHRRHRSRRLNAFIEW 290


>gi|220916837|ref|YP_002492141.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954691|gb|ACL65075.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 301

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 131/295 (44%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++ VF  V  +GSFT AA  L L +SS+SR ++ LE ++GI+L  R  R L+LT+ 
Sbjct: 1   MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEADLGIRLLQRTTRRLSLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  T +    L     E      +P G +R+   +DL  + L      FL  +P +
Sbjct: 61  GRAYYERTRDALAGLREASEEAAALGAEPRGTVRVTAPVDLAPD-LARLTDAFLRAHPQV 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L  + +D+  +  D AIR    +  SSL+ RKL    +  +AAP YL+    P  
Sbjct: 120 RVEVSLTARYVDLVKEGFDLAIRAG-VLADSSLLARKLSDSALALFAAPSYLQARGRPRR 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H+ + +       +         ++     R +    + +  +    V G+GIA
Sbjct: 179 LADLAGHDCLLYRAGPETAVWRLTGRRGEEQVTVHGRAAA---DEFAFVRGMLVAGAGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+P  +V        + R++   +     V   +P        +  FR+ I    
Sbjct: 236 LVPTGMVAAPLREGAIERVLPQYVRRGGPVSVVWPSRRYEPVAVARFRDAIVAAL 290


>gi|170696142|ref|ZP_02887277.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138957|gb|EDT07150.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 330

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 123/297 (41%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ VF  +   GSFT A+E+L +S  ++SR ++ LE  +G +L  R  R +  T+
Sbjct: 25  MDKLREMEVFVAIVDRGSFTSASEKLGMSTPAVSRALNSLEARLGTQLLARTTRTIRPTD 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        +V   +      +    + P G L ++  +  GQ  +   +  F L YP+
Sbjct: 85  AGLGYLDACRKVLDAITEADANVAADHLNPVGTLTVSAPVMFGQRFIAPLINAFALRYPE 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +  I  ++   +  +  D A+R+   +  SS+    L  +    YAAP YL    EP 
Sbjct: 145 VTVNAIYVDRTTRLLEEGVDIAVRIGH-LGDSSIFAIPLGFVRRRTYAAPAYLAAHGEPR 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  ++F  +       F+   T      +PR   + V+   + +   +   G+
Sbjct: 204 HPKDLADHQCVSFTGVSHPLEWVFDGNGTRMPVRIQPR---MIVDLTAAAVLAALDCVGL 260

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             L  Y       +  L  I+         V   + E    +GK++AF +F+    R
Sbjct: 261 TQLLSYQAAQEVQDGKLKPILTAFEPEPTPVSLLHIERRGASGKVRAFVDFVTESLR 317


>gi|317046924|ref|YP_004114572.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316948541|gb|ADU68016.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 299

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 115/293 (39%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L +F  +A+  SF  AA + +++ S++S  +   E  +G++L  R  R + LTE G
Sbjct: 7   TLQELEMFAAIAQHLSFRKAASERNITPSALSHAMRNFEERLGVRLLNRTTRKVALTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +        L     EL +    P G LRI+          Q  +  F+  YPDI 
Sbjct: 67  DRFLQRIQPALQDLAQAVDELNDWRSDPRGSLRISMPRSAEALFFQSLILPFMQRYPDIT 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  ++  +DI     D  +R    +    +     + +   A A P ++     P S 
Sbjct: 127 LEIDSNDSLLDIVAAGFDAGVRYGAVLAQDMVAVPFGIPMRALAVATPEFIARYGVPNSP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
             L     I   +        + W    D    E  +   L +++   I+Q  + G+GIA
Sbjct: 187 AALLNFPCI---ERRFPSGRRYRWEFWQDGQKQEVAVNGSLVLDNNERILQAALAGAGIA 243

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            L    V D     +LV I+ D        +  YP     +  L+ F +++  
Sbjct: 244 FLHHGTVMDAIQRGDLVEILSDFTQVEEGFWLYYPSRKYLSTPLRYFIDWLKE 296


>gi|296388675|ref|ZP_06878150.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 323

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 132/297 (44%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R F  V   GSFT AA+ L  S +++SRQ++GLE  +  +L  R+ R + +T
Sbjct: 1   MDL-LHGIRTFVRVVEHGSFTQAAQALGTSPATVSRQVAGLEQALSARLLQRNTRSVVVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +    ++   +     ++++S    SG+LR+    +LG   L   L ++L  +P
Sbjct: 60  ESGLRYYEHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L L      +  +  D  I L + +  S+L+ R L  +     AAP YL     P
Sbjct: 120 DVSVDLTLAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L +H  +      P C + + ++      + +     L+VN   +       G G
Sbjct: 180 RTPEDLLRHRCLNVA--APSCPQGWVFVGERGETLLD-LDEALKVNLPEAACAAAAAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + LLP ++        +L+R++         V+  Y        K++ + +F+  + 
Sbjct: 237 VCLLPGFVAARALQEGSLLRLLPGHRLHVREVFVLYSSRRYLDAKIRTWVDFLRERL 293


>gi|107024353|ref|YP_622680.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116688321|ref|YP_833944.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105894542|gb|ABF77707.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116646410|gb|ABK07051.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 325

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L +F     +GS + AA +L L +S++S++++ LE  +G +L +R +R   LT  
Sbjct: 23  MNLNDLYLFVQAVEAGSMSAAARRLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLTPV 82

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++          + ++ +  +   + +P+G +RI +++ + Q++L   L    + +P +
Sbjct: 83  GAEFFEHARAAVIEADSARDAVLRQAAEPAGVVRITSSVPVAQHILAPCLPALAIAHPKL 142

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +Q+   ++ +DI+ +  D A+R    P+  S+L+QR L    +   AAP YL     P 
Sbjct: 143 LLQIHASDRLVDIAQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPAYLARAGTPD 202

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H+ +  G       + +      D     PR+  LQ +    ++Q    G G+
Sbjct: 203 TPADLAQHDGLHPGP------QPWRLQRRGDAVDVTPRL-RLQADESTLLLQAATAGLGL 255

Query: 242 ALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LPD+I      +  LVR++      + T     P        ++A   F+
Sbjct: 256 ACLPDWIAGAALASGALVRVLPGWCAGTVTTTLLMPHRRGQLPGVRAAVEFL 307


>gi|49083700|gb|AAT51112.1| PA2838 [synthetic construct]
          Length = 324

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 133/296 (44%), Gaps = 7/296 (2%)

Query: 3   FDWDK-LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R F  V   GSFT AA+ L  S +++SRQ++GLE  +  +L  R+ R + +TE
Sbjct: 1   MDLLQGIRTFVRVVEHGSFTQAAQALGTSPATVSRQVAGLEQALSARLLQRNTRSVVVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +    ++   +     ++++S    SG+LR+    +LG   L   L ++L  +PD
Sbjct: 61  SGLRYYGHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L      +  +  D  I L + +  S+L+ R L  +     AAP YL     P 
Sbjct: 121 VSVDLTLAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L +H  +      P C + + ++      + +     L+VN   +       G G+
Sbjct: 181 TPEDLLRHRCLNVA--APSCPQGWAFVGERGETLLD-LDEALKVNLPEAACAAAAAGLGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LLP ++        +L+R++         V+  Y        K++ + +F+  + 
Sbjct: 238 CLLPGFVAARALQEGSLLRLLPGHRLHVREVFVLYSSRRYLDAKIRTWVDFLRERL 293


>gi|50121772|ref|YP_050939.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612298|emb|CAG75748.1| lLysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 315

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 127/288 (44%), Gaps = 6/288 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++VF  V   GS T AA +L +S++  +R I+ LE   G++L +R +R L LT 
Sbjct: 1   MDRFVAMQVFVDVVELGSLTAAANKLDISRAMATRYIASLEKSFGVRLLHRSSRSLGLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS++     ++    +   + L+  S +P+G +R+A++I  GQ+ L   ++ +   YP 
Sbjct: 61  AGSEILSYCRQILALNDDIGVALESKSQEPNGLIRVASSISFGQSYLADAMRRYASQYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++L +  I++     D AI +   +   S+I R+L        AAP Y+     P 
Sbjct: 121 VAVEMVLKDASINLVEQRIDLAIHVGNKL-DPSVISRQLTRCASVVCAAPDYMARNGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              +L +HN +                   +  + E  ++     N  + ++   + G G
Sbjct: 180 RPDDLRQHNCLHHTRFGNVWRFQRPSAKGENLVMDEVDVTGNFAANDSMVLLHAALAGGG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           I  LP +          LVR++ D + P   VY  Y          + 
Sbjct: 240 IVHLPAFTTDPYLRTGALVRVLTDYLLPELGVYALYSSRKYLPTSTRT 287


>gi|186470558|ref|YP_001861876.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196867|gb|ACC74830.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 316

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 125/295 (42%), Gaps = 7/295 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L     VA +G F  AA++L ++ SS++R +  LE  +G  L  R  R ++LT+ G   
Sbjct: 6   ALNTLLEVADAGGFAKAAQRLGVATSSVTRLMDALEASLGTALLTRTPRKVSLTDAGMAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               S+V   L      + +S   P G LRI       +  L  +L  FL  YP I + +
Sbjct: 66  VEQISKVLDDLAEADESILDSGASPVGALRITVPSAYNRTQLAPHLAAFLAEYPRIALDV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +   D+++D  D A+R+    +  +L+ +KL     +  A+  YL+    P +   L
Sbjct: 126 VVADHFADLALDRIDVAVRIGLISRDPNLVVKKLADNPRYVVASHDYLQRAGTPPAPVAL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++H  +                +             L  NS   +++  + G GIALLPD
Sbjct: 186 NEHECLRIAYGGSYRARQVWTFSRNALQERVDVRGRLISNSLEMLLEAVLAGHGIALLPD 245

Query: 247 YIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++V        L+R+  D           VY  Y    +++ K++A   F+  + 
Sbjct: 246 WLVNHEIGAGRLMRLFADFDVTPQNGEAVVYAAYLPNRRHSSKVRALLRFLEARV 300


>gi|116695858|ref|YP_841434.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530357|emb|CAJ96704.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 302

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 126/297 (42%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V     F  A   L + +S +SR+++ LE  +G++L  R  R  ++T
Sbjct: 1   MHPDLNDLYYFAQVVDHQGFAPAGRVLGIPKSKLSRRVAMLEERLGVRLIQRSTRRFSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  + E  +  ++++  +PSG +R++  + L    +   + +F+   P
Sbjct: 61  ELGQTYYAHCKAMLVEAEAAESAIEQTRAEPSGLVRMSCPVALLHARVGDMIADFMAANP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + + L   N+ +D+  +  D AIR+R  P++ S L+ R L        A+P  L     
Sbjct: 121 KVIVHLEATNRRVDVVAEGIDLAIRVRVPPLEDSDLVMRVLAERAWCFVASPALLAGHGP 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L+  +L+    +  G   P+    ++                L  +  + +    V G+
Sbjct: 181 LLAPADLNVLPTLDLGP--PRPSHTWSLYGPDGASAELHHKPRLVTDDMIMLRTAAVAGA 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  LP  ++ D   +  LV+++ D       ++  +P        ++   +F+  +
Sbjct: 239 GIVQLPVMMMTDQLRDGRLVKVLPDWSVRGGVIHAVFPSRRGLLPSVRELIDFLSQR 295


>gi|309779413|ref|ZP_07674174.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
 gi|308921654|gb|EFP67290.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
          Length = 305

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 124/293 (42%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LE ++G +L  R +  + +T  G 
Sbjct: 4   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAELEVQLGTRLLQRSSHRVAVTPVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   ++       +     +  +P+G LR+ T+  L + L+ G L EF   +P ++I
Sbjct: 64  AVYRHARDMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLVAGWLAEFAHAHPKLRI 123

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L L N  +D+     D AIR    P+ S  ++ R LV       A+P  +    EP + 
Sbjct: 124 ELDLSNTYVDLIEQRIDVAIRAATGPLPSRDVVARHLVVSPRVLVASPALIARVGEPDTP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L+    +  G L      D+         +  P       ++ +++ +  + G G+ +
Sbjct: 184 AALEDFPCLGQGSLTRS--RDWVLHDARGHRLSLPIRPRFASDNIIALREAAIAGLGLTI 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP +          L  ++         ++  YP        +KA   F+  +
Sbjct: 242 LPQHCCHAALGRGQLRTVLSGWTPEPADLHALYPSRAGVPPSVKALVAFLRER 294


>gi|168230103|ref|ZP_02655161.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470746|ref|ZP_03076730.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|238911938|ref|ZP_04655775.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|194457110|gb|EDX45949.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335448|gb|EDZ22212.1| regulatory protein, LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 301

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLRIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYSSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGEDYAMRMQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++  +    +   YP+       ++AF ++
Sbjct: 239 LIRVASYLVAPYLRSGALVTCMDNH-SYDLPLALVYPQNRFLPPAVRAFYDW 289


>gi|190892251|ref|YP_001978793.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697530|gb|ACE91615.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 304

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 133/289 (46%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GSFT AA  L + ++++SR+I+ LE E+G++L  R  R L+ T+ 
Sbjct: 2   LDLNDIMIFARVIEAGSFTAAARLLGMPKTTVSRRIAALERELGVRLLQRTTRSLSATDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  +S+    +E   + L E+  +P+G +RI+  +  G + LQ  + + L  YP  
Sbjct: 62  GRLYYEESSQALRTIEGANLRLAEARAEPAGTIRISAPVGFGGHFLQDAIFDLLSTYPKS 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L L +  +++  +  D A R    ++ S+LI RKL + H    A+P YL     P  
Sbjct: 122 RVELRLTDDRLNLVENGIDLAFRTG-ILEDSTLIARKLGSTHRLLCASPDYLARRGAPDR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H+ +  G            L         P       N   ++M   + G GIA
Sbjct: 181 PADLVRHDCVVAGQSTHAQW----LLEGPHGQETIPVSGRFAANEMQAVMAAAIAGYGIA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP  +         L R+++   TP   ++  YP +      +K F  
Sbjct: 237 RLPHGVANAYIRGGRLCRVLDGYTTPVGGLHVVYPSSRHLPPLVKTFIE 285


>gi|170742631|ref|YP_001771286.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196905|gb|ACA18852.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 304

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GSF  A   L LSQ+ +++ ++ LE  +G +L +R  R LTLTE G    
Sbjct: 8   MQVFVRVAGLGSFAAAGRSLGLSQTGVTKHVTALEERLGTRLLHRSTRRLTLTEAGRGYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +   +  +++P+G LR+   +  G   +   L  F   +P +Q+ L 
Sbjct: 68  EACERILAEITEAEAAARAEALEPTGTLRLNVPLSFGVREIAPALAAFTAAHPALQVDLG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A+R+   ++ S+L+ R L    +   AAP YL     P   ++L 
Sbjct: 128 LSDRAVDLIEEGWDMAVRIGH-LRDSALVSRFLAPCRLLLCAAPDYLAARGRPRRPEDLG 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN + +  L       F   A             L+ ++  +++   V G G+   P +
Sbjct: 187 RHNCLGYT-LASSGGWRFGGRAYA-------VTGNLRASNGDALVAAAVAGQGLIYQPSF 238

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IV D      LV +          ++   P   +   K++A   F+  +
Sbjct: 239 IVGDALRAGRLVALDLGAPPSVLPIHALMPPGRRQPAKVRACVAFLADR 287


>gi|16119407|ref|NP_396113.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15161935|gb|AAK90554.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 309

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 126/289 (43%), Gaps = 4/289 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   A + SF+ AA +L ++ +++SR ++ LE  +GI+LF+R  R LTLTE G
Sbjct: 3   TLANLEAFVRSAEASSFSGAARRLSITPAAVSRNVAMLERNLGIRLFHRSTRKLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +  + L+       ++  +P G L+++ ++      +   L +FL  YP ++
Sbjct: 63  ESFLASIGDSLNHLQGAIDGASQTKGEPVGVLKLSMSLSFAMGYVLPALPDFLARYPGVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                D++ +D+  +  D AI     +    ++   L  +H+ A A+P Y    R P S 
Sbjct: 123 PDWHFDSRKVDLIAEGFDAAIGGGFELN-PGIVSTTLAPVHVIAVASPSYFAARRRPTSP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I         +  +       R         + ++    ++Q  + G GIAL
Sbjct: 182 VDLADHAGILMRSSNSGRIRQWMMRDAQGREERALLNETIVMSDAAPMVQAAIAGLGIAL 241

Query: 244 L--PDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L  PD +   ++  L RI+      + ++   Y   +    K +AF +F
Sbjct: 242 LAVPDVLPHMESGALERILPKWYADAGSISLYYSGRVLQPLKTRAFIDF 290


>gi|330816606|ref|YP_004360311.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327368999|gb|AEA60355.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 314

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 124/292 (42%), Gaps = 6/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   VAR  SF  A+ +L +S +++S  ++GLE  + ++LF R  R + LT+ G 
Sbjct: 6   LTELEVVLAVARLASFRAASRELGMSTTAVSAAVAGLEARLKVRLFNRSTRSVALTDAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     +    ++     E       PSG LR+    +    L+Q  L E+L  YP +++
Sbjct: 66  RYVERVAPALAEIRRADEEAGTGPDVPSGTLRLNAPPETATMLVQPLLAEYLRRYPQVRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++ D + IDI  D  D  IRL + +    +       I M   A P YL     P    
Sbjct: 126 DVVSDLRLIDIVADGFDAGIRLAESVPQDMIAVPLTDEIRMRVVATPGYLARHGTPREPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H LI+    + + +  +  L    +         L  +   +I Q  + G G+  L
Sbjct: 186 ELVDHQLISM--RLGRGIYHWE-LERAGQKFVSNLPMRLVFSDSRAIRQATLAGLGLGFL 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            D+ V ++     LV +++D   P   +   YP       +L+A    +  +
Sbjct: 243 SDWFVSEDLARGALVPVLDDWCQPFGGLRLYYPGRRFVPVRLRALIELVQER 294


>gi|262042949|ref|ZP_06016093.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039666|gb|EEW40793.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 304

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 126/295 (42%), Gaps = 11/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L +F  +   GSF+ AA  L +S+   +  I  LE  +G +L +R  R +  T 
Sbjct: 1   MDKLDTLTLFVRIVERGSFSAAAADLGVSRPVATAAIKALEVSLGARLLHRTTRHVRPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS  ++    +   LE      + +    SG +R+    +L + LL   L +FL  YPD
Sbjct: 61  EGSLYYQRCVSILAALEEA---NRSAGGSISGTIRVDVAGNLARTLLLPALPQFLARYPD 117

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +Q+    +D+D+  +  DC IR    +  S +I R L  +     A+P YL     P 
Sbjct: 118 ITLQIGESERDVDLVREGVDCVIR-GGHLPDSEMICRPLAGLQEITCASPAYLARYGTPH 176

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           +I+ L  H +I F  +  +       + T +    E  + C L  +      +   LG G
Sbjct: 177 TIEGLTGHVMIGF--VSSRAHRTLPLIFTQNGRQSEVSLPCRLLTSDADVGAEAARLGFG 234

Query: 241 I--ALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  A LP       +  L  ++ D       +   YP   + + +++ F +++  
Sbjct: 235 LYQAPLPRLEADLASGALTEVLADFRPAPLPLSLLYPSNRQLSARVQVFIDWVTA 289


>gi|157375640|ref|YP_001474240.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318014|gb|ABV37112.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 315

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 132/289 (45%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  +A +GS T AAE+L +S S +S+Q+  LE ++ ++L  R  R L LT++G   
Sbjct: 11  QMVLFNALATTGSLTKAAERLEVSVSHVSKQLHILEDKLNVQLINRSTRSLALTQEGKDF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   + +    + +S  + SG +R+A +   G   +   L      YP +  ++
Sbjct: 71  ADYCDQIVGLIHSANTLMTDSRDEVSGNVRLALSCSFGTLHVLPALDALQKKYPSLTTEV 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D      + I +   + +++V  H    A+P Y++    P    +L
Sbjct: 131 SLFDYKVDMLEEEIDLWFTTFEEINA-GYVAQRIVDTHFILLASPDYIQVHGAPTHPDDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN +T+     K     +WL   D    + ++S   +V+   +I    + G GI  + 
Sbjct: 190 KAHNCVTYHS---KNRSYTHWLFAKDEEQLDVQVSGNYRVDKAEAIRDAVLAGRGIGYIA 246

Query: 246 DYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            Y++ D   +  L+ +M D   T    VY  YP+      +LK   +F+
Sbjct: 247 TYLLTDELESGKLIPLMSDWKPTQKMPVYAVYPKYQNLPVRLKTIIDFV 295


>gi|170737245|ref|YP_001778505.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819433|gb|ACA94015.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 301

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 4/283 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     VAR+ SFT AA QL +SQS++S  +  LE  +G +L  R++R +T TE G +L 
Sbjct: 13  LTALIAVARAKSFTRAAVQLGVSQSAVSHAVRALEERLGARLLARNSRTVTPTEVGERLL 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            + +    +++     L +    P G +R+       + +L   LKEFL  YPDI+++L 
Sbjct: 73  HIVAPRLKEIDAEMSALSDLGGSPRGSIRLTAPDYPSRTILAPKLKEFLPKYPDIKVELS 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +DN+ +D+  +  D  +RL + I    +  +    +         Y      P +  +L 
Sbjct: 133 IDNRFVDLVAEQFDAGVRLGEAIAQDMIAVQIGPDVRFTVVGTKRYFATHAVPRTPGDLV 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H+ +    +    +  +       RP+       L  N     +   V G G+A +P+ 
Sbjct: 193 HHSCVNLRLMAHGGLWAWE-FEKGGRPVNVRVDGQLACNDIYECLAGAVAGLGLAYVPED 251

Query: 248 IVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           + +       L+ ++ D        Y  YP   + +G +    
Sbjct: 252 LAEPYIKAQHLIPVLTDWCPSWGGFYLYYPSRRQPSGAMALLV 294


>gi|221067396|ref|ZP_03543501.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220712419|gb|EED67787.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 308

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 136/300 (45%), Gaps = 10/300 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  VA SG F+ AA +L ++ SS++R I GLE  +G  L  R  R +TLT+
Sbjct: 1   MDKLHALRAFLDVAESGGFSKAARRLGVATSSVTRLIDGLEESLGTALLTRTTRRVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+      S V   LE     + ++  +  G LR++      +  L  ++  FL   P 
Sbjct: 61  AGAAYLEQVSRVLSDLEEADGSVSDTGTEAVGPLRVSLPATFARLCLAPHIASFLRENPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+L +  +D+  +  D A+R+  P     LI R L     +  A+  YL+    PL
Sbjct: 121 VSLDLVLSDAYVDLVSERIDVAVRIGTPALQPQLIVRNLAEHRRYVVASHAYLQRHGTPL 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL KH  + F        + +++     +         L VN+   + +  + G GI
Sbjct: 181 IPEELSKHECMRFS--YQPGPQRWSFRHRDGQLQHVEVQGRLAVNNSDILREAVLDGGGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKA 294
           +LL +++++++     L R+ ED           VY  Y    + + K++ F +F+ ++ 
Sbjct: 239 SLLAEWLIREDVRVGRLRRLFEDYEINPQEHSVCVYAAYLPNRRYSKKVQVFLDFLQMQL 298


>gi|257487935|ref|ZP_05641976.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331008625|gb|EGH88681.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 303

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 137/301 (45%), Gaps = 12/301 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M++ + D L VF  VAR  SF  AA +L +S + +S+++  LE  + + L +R  R +++
Sbjct: 1   MNYPNLDDLNVFVHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMSVVLLHRSTRQVSI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +++     +   ++    E+     +PSG LR+ ++   G+  +   L E   LY
Sbjct: 61  TEDGERVYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I+L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YLK+   
Sbjct: 121 PKLDIRLDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PLSI EL  H+ +   +           L              L  N      Q+C+ G 
Sbjct: 180 PLSIGELANHDCLVIKERDRPFGIWH--LNGPQGAETVKVTGSLSTNHGEIARQWCLDGR 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L   + V+       LV+++ +    +  ++  +   L ++ K++    F+    RD
Sbjct: 238 GVLLRSLWDVRTDLAEGRLVQMLPEYRQDA-DIWAVHTSPLMSSAKVRVTVEFL----RD 292

Query: 297 W 297
           +
Sbjct: 293 Y 293


>gi|146309378|ref|YP_001189843.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145577579|gb|ABP87111.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 352

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 6/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F  +  +GS + AA QL+ +Q ++SR++  LE  +G++L  R   G+ LT  G 
Sbjct: 43  IELLRTFVRIVDAGSLSAAAAQLNTTQPTVSRRLQTLERSLGLQLLNRTTHGMQLTGDGE 102

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +V       + EL  +   P G LR+      GQ+ L   L E+L  YP + +
Sbjct: 103 RCYTYARQVLESWTEMEDELIGAREDPRGTLRVQVPHAFGQDQLIAPLGEYLRRYPKVSV 162

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D + +  DCAI++   I+  S++  +L  +     AAP  L +   P S +
Sbjct: 163 EWVLHDRSPDFTAEGIDCAIQVGF-IEDPSVVAIRLGEVPRIVVAAPELLGDEPLPASTE 221

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +   +          E         R         +  +S  ++    + G G  + 
Sbjct: 222 QLQRLPWLALRTYYTD--EVVLTCLRDGRSHRFAIQPRMSTDSLYALRSAALAGLGACVS 279

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +IV    +   LV+++         VY  YP A     KL+ F   I  +
Sbjct: 280 SAWIVARDIEEGRLVQLIPQWQAAPLPVYLIYPHARSYPAKLRLFAELIRSR 331


>gi|332530133|ref|ZP_08406082.1| transcriptional regulator [Hylemonella gracilis ATCC 19624]
 gi|332040403|gb|EGI76780.1| transcriptional regulator [Hylemonella gracilis ATCC 19624]
          Length = 319

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 122/284 (42%), Gaps = 7/284 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +  +GS + AAEQL  +Q +ISR++  LE  +G++L  R    + LTE G + +
Sbjct: 16  IETFVRIVEAGSLSAAAEQLGSTQPTISRRLQALERAMGVRLLQRTTHAMRLTEDGQRCY 75

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +  + E + +  +P+G LR+      GQ  L   L ++L  YP ++++ +
Sbjct: 76  VRAKDLISSWQAFESETRGAGEEPAGTLRVVAPHAFGQQQLVQPLADYLRRYPKMRVEWL 135

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D   +  DCAIR+   +Q  S++   L  +      AP        P    EL 
Sbjct: 136 LHDRMPDFIAEGVDCAIRVGG-VQDPSVVALPLGEVPRIVVGAPSLFDGA-LPTHPAELT 193

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +   +         +      A  D          L  +   ++    V G G+A+   +
Sbjct: 194 RLPWLALRTFYRNEISLTR--AGSDEVARIGIQPRLSTDGLYALRTAAVEGLGLAVGSAW 251

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +++      LV ++         V+  YP+A  +  +L++F +
Sbjct: 252 AMQEELRAGRLVHVVPQWRADPLPVFLVYPQARLHPARLRSFID 295


>gi|158422198|ref|YP_001523490.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS
           571]
 gi|158329087|dbj|BAF86572.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS
           571]
          Length = 313

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 88/293 (30%), Positives = 146/293 (49%), Gaps = 6/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F+W  LR    VARSGS T AA Q+ +  S++SR+I+ LET +G KLF R   GL LT 
Sbjct: 16  DFEWSDLRYLLTVARSGSLTAAARQMGVEHSTVSRRITALETALGAKLFDRRTGGLLLTP 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG +L      +     + Q E+  + +  SG +RI      G   L   L  F   +P 
Sbjct: 76  QGERLMAAAEGMEALALSAQGEIAGADLGVSGTVRIGAPDGFGTVFLAPRLGAFSRQHPA 135

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++IQL+   + I +S   AD AI L +P +   L  RKL    +  YAA  YL+      
Sbjct: 136 LEIQLLAMPRLISLSKREADIAISLSRP-KEGRLHARKLTDYRLGLYAAVAYLETHGPIE 194

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S   L +H  I + D +    E  +++  V R + +PRI   + ++ ++ M+    G+G+
Sbjct: 195 SRAALGRHPFIGYIDDLIYAPE-LDYVPLVAREL-KPRI---KSSNLVAQMEATRAGAGV 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP ++    P+LV ++   ++ + T Y      +++  +++A  +FI  + 
Sbjct: 250 CVLPCFMGDAMPDLVPVLRGEVSLTRTFYLVTHTDMRDLARVRAAADFIASEV 302


>gi|145598966|ref|YP_001163042.1| DNA-binding transcriptional activator GcvA [Yersinia pestis
           Pestoides F]
 gi|145210662|gb|ABP40069.1| glycine cleavage system transcriptional activator [Yersinia pestis
           Pestoides F]
          Length = 305

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 127/296 (42%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRAFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFTSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNAAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +    S L    L    +    AP  L          
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWSGLRTECLYAEFLLPVCAPSLLTGENGLKVPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +WLA   R +G P+I+  Q    +    ++Q  V G GI
Sbjct: 185 DLANHTLLH-------DTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|157372091|ref|YP_001480080.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323855|gb|ABV42952.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 316

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 136/305 (44%), Gaps = 18/305 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+A  GSFT AAE+L +S++++S++I  +ET  G+ L  R  R + LT+ G 
Sbjct: 10  WTHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKEIETLAGVPLVQRTTRSVRLTDAGL 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L     + + +++ +   + +S+    G +R+   +   +  L   +  FL   P++++
Sbjct: 70  RLVEELRQPFAQIKQSFSGICDSAGPLRGSVRVTAPVAFARQQLVPRITGFLRANPEVRL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ + ++ +  D AIR    +  +  +  +L      A A+  Y+K    P+S  
Sbjct: 130 QLEVSDRLVSLTSEGFDLAIRHSDNLPDTH-VAWRLCQTETLAVASADYVKRHGMPVSPA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP-------IGEPRISCLQVNSYLSIMQYCVL 237
           +L +H  + +    P+  E  +W     R        I  P       N+  SI      
Sbjct: 189 DLQRHQCLYY----PRSSESPSWSFVAKRAAEGKTEKIRVPVSGPFATNNSESIRDAAAE 244

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIF 291
           G GIALLPD+  +    +  L+ ++           ++Y   P A + +  +  F  ++ 
Sbjct: 245 GLGIALLPDFSAQQALADGRLIEVLPAWRPIDAFADSLYVVRPYAPQVSRAVAEFSRYLR 304

Query: 292 LKARD 296
               +
Sbjct: 305 SAFAE 309


>gi|33600975|ref|NP_888535.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
 gi|33575410|emb|CAE32487.1| LysR family regulatory protein [Bordetella bronchiseptica RB50]
          Length = 302

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 133/292 (45%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D+ RVF  VA  GSF  AA  L L ++S+S  +  LE +VG +L +R  R + LT 
Sbjct: 1   MDRFDQYRVFAQVAEMGSFIKAAHALELPRASVSAAVQQLEGQVGARLLHRTTRQVRLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L      +  ++E      Q S  + +G+L I     + + L+   L   L  +P 
Sbjct: 61  DGTQLLERIRPLLAEVEDIDQLFQASQRQAAGRLNIDVPSRIARRLVAPALPALLRRHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCA+R+   + SSSL+ R L ++ +   A+P YL+    P 
Sbjct: 121 LQLALGSGDRAIDLVREGVDCAVRIG-VLHSSSLVVRPLGSLALINCASPAYLREHGAPG 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              EL   H  + +          + +             S + VN+  S +  C+ G G
Sbjct: 180 HPDELAAGHWTVGYASPQTGRALPWEYATPRGGTSLVEAASRVVVNNAESYIACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +P Y V+   D   LV +M D    S  V   YP   + + +L  F  +
Sbjct: 240 LIQIPRYDVQHLLDGGQLVEVMPDQRAASMPVALLYPHRRQRSRRLAVFLEW 291


>gi|288961211|ref|YP_003451550.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288913519|dbj|BAI75006.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 354

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 126/299 (42%), Gaps = 14/299 (4%)

Query: 1   MSFDWDK--------LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR 52
           M  D           L  F  +  SGS + AA  L  +Q ++SR++  LE  +G++L  R
Sbjct: 43  MKLDLTAAGSDRIALLETFVRIVESGSLSAAAALLGSTQPTVSRRLQLLERMLGVRLLQR 102

Query: 53  HARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL 112
               ++LTE G++ +    ++    +  + +++ +  +PSG LR+      GQ  L G +
Sbjct: 103 STHRMSLTEDGTRCYERAKDLLAGWQILESDVRGADDQPSGHLRVVAPHAFGQQQLIGPV 162

Query: 113 KEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
            ++L  YP + ++ +L ++  D   +  DCAIR+ + +   S++  ++  +   A A+P 
Sbjct: 163 VDYLRRYPGMTVEWLLHDRMPDFIAEGIDCAIRVGE-VADPSVVALRVAEVPRIAVASPL 221

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
            L     P    EL +   +          E     AT            L  +   +I 
Sbjct: 222 MLDGRPPPRHPDELAELPWLALRTFYRD--EVMLTHATTGETASFAIRPRLSTDGLQAIR 279

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
              +LG G A+   + + ++     LV +  D    +  V+  YP A     +L+ F  
Sbjct: 280 NAALLGLGAAIGSQWALVEDLAAGRLVHLAPDWRAAALPVHLVYPPARHQPARLRRFIE 338


>gi|222110064|ref|YP_002552328.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221729508|gb|ACM32328.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 310

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 132/296 (44%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +  F  V  + SFT AA+ LH+S++++++ +  LE  + ++L  R  R + +T 
Sbjct: 1   MDRFDAMVAFARVVETRSFTQAAQTLHMSKTTVTQLVQQLEARLRVRLLNRTTRKVNVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +     +   L+  +  L  +S  P G+LR+     L + +L      F   YPD
Sbjct: 61  EGAAYYERVVRLLGDLDDAETSLTSASSAPRGRLRVDVPSPLARMVLVPAFAAFHARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++ +D+  +  DC +R  +P   +SL+ R +  + M  YAAP YL N   PL
Sbjct: 121 IQLHMGVSDRVVDLIDENVDCVVRGGEPG-DASLVARHVGDLSMGLYAAPTYLANAGMPL 179

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + L    H+++ F       +     L   D  +       +  +   + +   V G 
Sbjct: 180 HPKNLEAAPHHIVGFLGSSTGRVLSCV-LHRGDEQVRVMGRYAIATDDGNAYLAAGVAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G   LP Y+   +     L  + ED       +Y  +P       +L+ F +++  
Sbjct: 239 GALWLPQYMAAPHLARGELAPLFEDWAIAPMPLYIAFPPNRHVGARLRVFMDWMVE 294


>gi|116690503|ref|YP_836126.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170733844|ref|YP_001765791.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116648592|gb|ABK09233.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169817086|gb|ACA91669.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 309

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT 
Sbjct: 1   MDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +  + +      +       G+L +     + + ++   L      +P 
Sbjct: 61  DGALLLERGRRLLAEADELDRLFRRRDRDVVGRLNVDVPSRIARRVVAPALPSLFRRHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P 
Sbjct: 121 LQLSLGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFTLINCASPDYLRECGVPE 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               L   H  I +    P    +  W    D       + S + VN+  + +  C+ G 
Sbjct: 180 HPDALAHGHWAIGYAS--PTTGRELGWEYCADGQRHTLTLPSRVIVNNAETYIAGCIAGM 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G+  +P + V+    +  LV +M         V   YP     + +L AF  +
Sbjct: 238 GLIQIPRFDVEHLLASGALVDVMPGHRAEPMDVSAVYPHRRHRSRRLNAFIEW 290


>gi|215481981|ref|YP_002324163.1| Putative transcriptional regulator [Acinetobacter baumannii
           AB307-0294]
 gi|213988372|gb|ACJ58671.1| Putative transcriptional regulator [Acinetobacter baumannii
           AB307-0294]
          Length = 299

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 121/296 (40%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F VVA+  SFT AA +L  SQS+IS+ +  LE  +GIKL  R  R +  T
Sbjct: 1   MKENLNDLHTFIVVAQERSFTRAAAKLRTSQSAISQTLRNLEDRIGIKLLSRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L  +      ++E    +L      P+G LRI+      Q +L   +++ +  +P
Sbjct: 61  EAGEYLLSLIQPAIEEIEHGMNQLSALKNDPAGTLRISADEYGIQTVLWPAVEKVIQQFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +++  D   +DI     D  +R    +    +  +    I M   A   YL+    P
Sbjct: 121 KISVEITSDYGLVDIVDGRFDAGLRRGGLVSKDMIALQISDPIQMLTVATKEYLERYGHP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              + L +H  I     +P   E + W  T         ++  +   +   ++Q    G 
Sbjct: 181 KQPKNLVEHQCINL--RLPTHGELYRWQFTKGNKTQSVNVNAKIVFTTLSPVLQAVRSGV 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA LP  +V+   ++  L   ++D        +  YP   +    L    N +  
Sbjct: 239 GIAYLPIDMVQPYIESGELEETLKDWRHSYEPYHLYYPHRREQAPLLNILINALKE 294


>gi|66044297|ref|YP_234138.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255004|gb|AAY36100.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 332

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 134/297 (45%), Gaps = 13/297 (4%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D    +R F  VA++GSFT AA  L  + +++SR +S LE  +  +L  R  R + LT
Sbjct: 17  PMDTLQNMRAFSCVAQAGSFTAAAAVLDTTTANVSRAVSNLEAHLQTRLLNRTTRRIALT 76

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   +E  + E  ++  +P+G+L++ +   +GQ+ +   +  +   +P
Sbjct: 77  EAGKRYLLRCEQILASVEEAEAEASDAHARPAGQLKMHSMPGVGQHYVIDAIARYRRNHP 136

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+   L + ++  D+  +  D +I L   +  S  + ++L   +    A+P Y+K     
Sbjct: 137 DVAFDLTMTHRVPDLLEEGYDVSIVLASELADSGFVSQRLGITYSIVCASPEYVKTFGMA 196

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236
               +L  H  +    L+        WL   D P G+  +    S L VNS  ++     
Sbjct: 197 HKPADLLNHACL---RLVSPVFPLDKWLF--DGPEGQEMVTINSSPLLVNSADAMKTAIS 251

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+ +LP Y   +   N  LVR++ D  +    +Y  YP       K++ +  ++
Sbjct: 252 SGMGVGILPIYSAIEGLRNGTLVRVLSDYRSQELNLYAIYPSRQYLDAKIRTWVEYL 308


>gi|326319123|ref|YP_004236795.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375959|gb|ADX48228.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 302

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 121/301 (40%), Gaps = 7/301 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M F +   LRV    AR GS T AA  L ++ ++ S  +  LE +VG++LF R  R L +
Sbjct: 1   MKFENLSDLRVLVEAARGGSLTAAARALEVTPAAASAMLKRLEAQVGVRLFERSTRALRI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T QG  L          L+      Q  +    G +R+A   DL   +L      F+  +
Sbjct: 61  TAQGGTLLEYAERALELLDEGAGLAQSETGALRGTVRLAAPTDL-SRVLLPRFDRFMERH 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +Q+ L   ++  D+  D  D A+R    +  S L+ R L      A AAP YL     
Sbjct: 120 PGVQLALSASDRLHDVRRDAVDLALRYSAELPDSQLVARALHRTRRLACAAPEYLARHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVL 237
           P    EL  H  I       + +      A    P  +G    +   V+       + + 
Sbjct: 180 PRHPSELAAHRCIAMAIAGRREVRWTFERAPGHPPETVGITLRAERSVDDGALAHAWALA 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GI       V+   D+  LV ++   +  ++TVY   P       +++A   F+  + 
Sbjct: 240 GGGIVYKSRLDVQAHLDSGQLVELLPGWLGQAYTVYAVLPSQRFVPARVRALVEFLAEEW 299

Query: 295 R 295
           R
Sbjct: 300 R 300


>gi|222082587|ref|YP_002541952.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221727266|gb|ACM30355.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 297

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 129/294 (43%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L+VF  VA + SF  A  QL LS S+I + ++ LE  +G++LF+R    + LT +G
Sbjct: 3   NFSGLKVFVRVAETRSFVDAGRQLGLSASAIGKSVARLEERLGVRLFHRSTHSVNLTPEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        +  ++E    E+Q++ +   G +R++                F+ +YP  +
Sbjct: 63  AIFLERCRRILAEMELATQEMQQARMVVRGTIRVSLPT--WAVTFMPVFARFMQIYPQAR 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++ +D+  +  D  IR    ++ S L+ R +        A+P YL     P   
Sbjct: 121 LELDLTDRLVDVIDEGYDLVIRTGD-MRDSRLMSRTVGHFRHTIVASPAYLAAHGIPQRP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  +         ++ +  LA     I         VN+  + ++    G GIA 
Sbjct: 180 EDLLQHLCLHRRHPETGRIDTWP-LAEEGADIELDLPITAVVNTVEARIELAEQGVGIAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +P   V        LV +++D +  +  +   +P +   +  ++   +FI   A
Sbjct: 239 VPSMSVSTQIQGGRLVPLLQDCVREAGVLRLLWPASSSPSHNVRTLVDFIAQSA 292


>gi|169795901|ref|YP_001713694.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157402|ref|YP_002319447.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483389|ref|YP_002325602.1| Putative transcriptional regulator [Acinetobacter baumannii
           AB307-0294]
 gi|301344921|ref|ZP_07225662.1| Putative transcriptional regulator [Acinetobacter baumannii AB056]
 gi|301512411|ref|ZP_07237648.1| Putative transcriptional regulator [Acinetobacter baumannii AB058]
 gi|301595371|ref|ZP_07240379.1| Putative transcriptional regulator [Acinetobacter baumannii AB059]
 gi|332854436|ref|ZP_08435368.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332868456|ref|ZP_08438169.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169148828|emb|CAM86697.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|213056562|gb|ACJ41464.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213987809|gb|ACJ58108.1| Putative transcriptional regulator [Acinetobacter baumannii
           AB307-0294]
 gi|332728012|gb|EGJ59404.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332733381|gb|EGJ64567.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 299

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 123/296 (41%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F VVA+  SFT AA +L  SQS+IS+ +  LE  +GIKL  R  R +  T
Sbjct: 1   MKENLNDLHTFMVVAQERSFTRAAAKLRTSQSAISQTLRNLEDRIGIKLLSRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L  +      ++E    ++      P+G LRI+      Q++L   +++ +  +P
Sbjct: 61  EAGEYLLNLLQPAIEEIENGINQISALKNDPAGTLRISADEYGIQSVLWPAVEKVIQQFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +++I D   +DI     D  +R    +    +  +    I M   A   +L     P
Sbjct: 121 KISVEIISDYGLVDIVQGRFDAGLRRGGLVSKDMIALQVSKPIQMLTVATKEFLARYGHP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              ++L ++  I     +P   E + W  T         ++  +   +   ++Q    G 
Sbjct: 181 KHPKDLVEYQCINL--RLPTHGELYRWQFTKQGKTQIITVNAKIVFTTLSPVLQAARSGV 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA LP  +V+   ++  L   ++D        +  YP   +    L    + +  
Sbjct: 239 GIAYLPIDMVQPYIESGELEETLKDWRHSYEPYHLYYPHRREQAPLLNILIDALKE 294


>gi|150377923|ref|YP_001314518.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032470|gb|ABR64585.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 295

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 124/301 (41%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA   +F  AA++L +++S++S+ +  LE   G  L  R  R + LT
Sbjct: 1   MQIDMNLLPLFVAVAEEDNFRAAADRLGVTRSAVSQGVRRLEDAFGTTLVTRTTRSVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    S+    + +    +  +  +P G LR+A T    + L    +  F   +P
Sbjct: 61  EAGERLREALSQPLSDIASALDRV-AAEDEPRGHLRVAVTSIAERFLSGPLIASFAEAHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + + + +++ DI     D  +RL + I+   +           A AAP YL     P
Sbjct: 120 KVTMDVTVTDEEFDIVAAGFDAGVRLGEVIEQDMIAVPLTGDQREMAVAAPSYLAAHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  +EL  H  + +          +        P        +  N    +++  + G+G
Sbjct: 180 LHPRELVHHRCVGWRRAPNVAPYRWE-FEENGIPFDVAVEPQITTNDLRFMLRSALCGAG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I    +   +   ++  LV ++ED + P    Y  +P+      K++A    +    R W
Sbjct: 239 ITFATEETFRPFVEDGRLVPLLEDFLPPFPGFYLYFPQRRNMAPKMRALIEHV----RRW 294

Query: 298 K 298
           +
Sbjct: 295 R 295


>gi|42522467|ref|NP_967847.1| LysR family transcriptional regulator [Bdellovibrio bacteriovorus
           HD100]
 gi|39574999|emb|CAE78840.1| transcriptional regulator, LysR family [Bdellovibrio bacteriovorus
           HD100]
          Length = 293

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 128/283 (45%), Gaps = 14/283 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  +A SGSF+ AA+ L +S+S IS+ IS LE+++G+ LF R  R + LT  G +    
Sbjct: 6   AFVKIADSGSFSAAAQALGVSKSHISKTISLLESDLGVALFVRSTRKVQLTSVGERFLET 65

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +    L++ + E+ + S  P G LR+      G+  +   + +    YPD++I+L   
Sbjct: 66  CRQSLQNLDSAKKEILDLSNTPRGVLRVTLAGIFGEEYIAPVVIDMAKRYPDLKIELDFS 125

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIR+   +++SSL+  K+ +   +  A+  YL         ++L  H
Sbjct: 126 SRVVDLIEEKFDVAIRIGH-LENSSLLATKIASRVEYVVASKAYLSAAPSLKEPEDLANH 184

Query: 190 NLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           N I          E  +W      +    P     + N+   + +  + G GIA LP   
Sbjct: 185 NCIG---------ERSSWSFRKRGKSFHIPVKGNFKCNNPRVLQKAALTGLGIARLPGSY 235

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             ++     L+ ++E+       ++   P   K    +K F  
Sbjct: 236 AFEDIKKGRLISLLENFSEGRKDIWAVTPIRHKQNINVKIFIQ 278


>gi|300693309|ref|YP_003749282.1| transcriptional regulators, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299075346|emb|CBJ34640.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           PSI07]
          Length = 305

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 127/293 (43%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LET++G +L  R +  +++T  G 
Sbjct: 4   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAELETQLGTRLLQRSSHRVSVTPVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + L+ G L EF   +P ++I
Sbjct: 64  AVYRHAREMADASAAIETLAGAARSEPAGVLRVGTSPLLAETLVSGWLAEFAQAHPKLRI 123

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L + N  +D+     D AIR    P+ S  ++ R L         +P  +    EP + 
Sbjct: 124 ELDVSNTYVDLIEQRIDVAIRAATGPLPSRDVVARHLAASPRVLVGSPALIARVGEPDTP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             LD    +  G L+     D+  L         P    +  ++ +++ +  + G G+A+
Sbjct: 184 AGLDALPCLGQGTLVRS--RDWVLLDARGHRHVIPIRPRMAADNLIALREAAIAGLGLAV 241

Query: 244 LP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP    +       L  ++         ++  YP        ++   +F+  +
Sbjct: 242 LPLHCCHAALSEGRLRTVLHAWPPEPADLHALYPSRAGVPPSVRTLVSFLRER 294


>gi|156932763|ref|YP_001436679.1| hypothetical protein ESA_00553 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531017|gb|ABU75843.1| hypothetical protein ESA_00553 [Cronobacter sakazakii ATCC BAA-894]
          Length = 301

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 142/299 (47%), Gaps = 7/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +L +F  V  + SFT AA  L  +++ +S  I  LE+E+G+ L  R  R LTLT+ 
Sbjct: 2   LNLSRLAMFVAVVDAKSFTGAAAALGQTKAVVSFNIRQLESELGVTLLLRSTRRLTLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++ +  +    +    ++Q S    SG+LR+ TT +   +++   L  F   +P +
Sbjct: 62  GERLYQRSLVLLKDADALLDDVQASHDGFSGELRVTTTPEYATHVVGPALAAFSRAHPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+    ++  D+  +  D AIRL   +Q S+     +    +   A+P +L+      +
Sbjct: 122 RIRHFSSSQHADLISERVDVAIRLG-TLQDSAYRAALISRFDIFPVASPAWLERH-PIST 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L + + +    L      +              R   +  +   ++M + + G G+A
Sbjct: 180 PGALSQADWLVHTRLASPLRWELTGPHNETLWFEITRPPVIAADGAGALMTFALEGCGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LLP ++VK   +   LVR++     P+  VY  YP+A   +GK++ F +F+  +AR+ +
Sbjct: 240 LLPAWLVKTALEEGRLVRLLPAYRFPAQGVYAVYPDARHVSGKVRGFIDFL--RAREAQ 296


>gi|33597256|ref|NP_884899.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33573683|emb|CAE37973.1| LysR-family transcriptional regulator [Bordetella parapertussis]
          Length = 301

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 121/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F        F  A   L + +S +SR+I+ LE  +G++L  R  R  ++T+ G
Sbjct: 3   DLNDLYYFVQTVDHRGFAPAGRALGMPKSKLSRRIAVLEERLGVRLIQRSTRHFSVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  Q  +  + V+P G +R++  + L    +   L EF+L YP + 
Sbjct: 63  QTYYEHCKAMLVEAEAAQEAIDAAQVEPRGVVRLSCPVALLHTHVGAMLGEFMLRYPRVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P+++S L+ R          A+P  L     P  
Sbjct: 123 LHLDASNRRVDVLGEGVDVAIRVRPPPLENSDLVMRPFADRGQCLVASPALLARHGAPAL 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G   P     +      D     P    +     L++    V G G+ 
Sbjct: 183 PADLAAWPSLALGQ--PNQPHSWLLTGPQDAQATVPLAPRMVTTDMLALRSAAVAGVGVV 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V+    +  LVR++ +       ++  +P        ++   +F+  +
Sbjct: 241 QLPSMMVRGQLADGTLVRLLPEWAPCRELIHAVFPSRRGLLSSVRTLVDFLAER 294


>gi|107099170|ref|ZP_01363088.1| hypothetical protein PaerPA_01000180 [Pseudomonas aeruginosa PACS2]
 gi|218888926|ref|YP_002437790.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254237581|ref|ZP_04930904.1| hypothetical protein PACG_03662 [Pseudomonas aeruginosa C3719]
 gi|296386668|ref|ZP_06876167.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313112244|ref|ZP_07798017.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|126169512|gb|EAZ55023.1| hypothetical protein PACG_03662 [Pseudomonas aeruginosa C3719]
 gi|218769149|emb|CAW24909.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310884519|gb|EFQ43113.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 310

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 122/299 (40%), Gaps = 4/299 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               ++ F   A +GSF  AA +L L+ + + + ++ LE+ +G++LF R  R LTLTE G
Sbjct: 3   TLSNIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +        ++T    +     +PSG L+++  +  G++ +   L EFL  YPDI 
Sbjct: 63  ERFLQEVGGSLEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+  +  D AI     +    ++ R L   H+   A+P YL++       
Sbjct: 123 PDWHFDNRQVDLIGEGFDAAIGGGFELP-PGVVARNLTPGHLILLASPAYLRDKPPIRHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I         +  +                 + ++   +  +   +G GI L
Sbjct: 182 GDLGGFDGIRIRSPQTGRVRSWPLRRRNGEEAPIELRERMTMSDPEATCEVAAMGLGITL 241

Query: 244 L---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +     Y   ++  LVR++ D    +      Y        K + F +F+    R    
Sbjct: 242 VCMQHAYAYLESGALVRVLPDWYVDAGNTSLYYAANKLLPAKTRVFVDFVVDYFRRQDL 300


>gi|288957959|ref|YP_003448300.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288910267|dbj|BAI71756.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 307

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/312 (23%), Positives = 133/312 (42%), Gaps = 32/312 (10%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D +    F  V   GSFT AA++L L ++++SR++  LE  +GI+L +R  R + L
Sbjct: 1   MRMQDLNDTIAFVKVVEEGSFTKAAQRLRLPKTTLSRKVRDLERRLGIRLLHRTTRRIGL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G+        +  +LE  +  + +    P G LRI T    G  ++   L EF   Y
Sbjct: 61  TEAGTVYFEHCRRIAGELEQAESAVAQLRDSPRGWLRITTPPSFGMKVIAPLLPEFRARY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD++I L+L ++++D+     D AIR+   +Q S++  RKL  +  H YAAP Y      
Sbjct: 121 PDVRIDLVLSHENLDLVAREIDLAIRMGA-LQDSTMAARKLGVLRRHVYAAPSYCSTYGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIM-- 232
           P    EL +H  +T  ++  +    F W         E  +       +  +    ++  
Sbjct: 180 PGHPDELVRH--LTLANMTARRPSGFGWRLFRTDGGLEEMVDAAIDPVMAADDPEMLIPT 237

Query: 233 -----------QYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG 281
                       + +             + +  + R+++        ++  +P       
Sbjct: 238 LLAGGGLALATDFAMR----------SYRADGQVERVLDGWKGSDVDLHAVFPGGRIQPP 287

Query: 282 KLKAFRNFIFLK 293
           KL++F +F+  +
Sbjct: 288 KLRSFLDFLAGR 299


>gi|152969871|ref|YP_001334980.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954720|gb|ABR76750.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 304

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 125/295 (42%), Gaps = 11/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L +F  +   GSF+ AA  L +S+   +  I  LE  +G +L +R  R +  T 
Sbjct: 1   MDKLDTLTLFVRIVERGSFSAAAADLGVSRPVATAAIKALEVSLGARLLHRTTRHVRPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS  ++    +   LE      + +    SG +R+    +L + LL   L +FL  YPD
Sbjct: 61  EGSLYYQRCVSILAALEEA---NRSAGGSISGTIRVDVAGNLARTLLLPALPQFLARYPD 117

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +Q+    +D+D+  +  DC IR    +  S +I R L  +     A+P YL     P 
Sbjct: 118 ITLQIGESERDVDLVREGVDCVIR-GGHLPDSEMICRPLAGLQEITCASPTYLARYGTPH 176

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           +I+ L  H +I F  +  +         T D    E  + C L  +      +   LG G
Sbjct: 177 TIEGLTGHVMIGF--VSSRTQRTLPLSFTQDGRQSEVSLPCRLLTSDADVGAEAARLGFG 234

Query: 241 I--ALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  A LP       +  L  ++ D       +   YP   + + +++ F +++  
Sbjct: 235 LYQAPLPRLEADLASGALTEVLADFRPAPLPLSLLYPSNRQLSARVQVFIDWVTA 289


>gi|126445516|ref|YP_001063810.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126225007|gb|ABN88512.1| transcriptional regulator [Burkholderia pseudomallei 668]
          Length = 301

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 126/296 (42%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE EVG  L  R  R L +TE
Sbjct: 6   DVNLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEVGASLVVRTTRRLNVTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    ET    +   +    G LR++  +D G  ++   L      +P 
Sbjct: 66  AGRAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPA 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L  D++ +D+  D  D AIRL + +  S+    +L        A+P ++     P 
Sbjct: 126 LEIELQCDDRVVDLVRDNLDVAIRLGR-LADSNHRAARLGGFERWLVASPAFVARHGAPA 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L     +    +    +E  N  A  +R     R      N+  +     + G G 
Sbjct: 185 SPEALGALPYVMLSTVPRTTLELAN--AHGERASVRCR-RAFASNTATACRAAVLAGGGF 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +   +   D+     LVR++     P   ++  +P A   + K++A  + +  + 
Sbjct: 242 GVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRALIDMLKTRL 297


>gi|209694640|ref|YP_002262568.1| transcriptional regulator AphB [Aliivibrio salmonicida LFI1238]
 gi|208008591|emb|CAQ78766.1| transcriptional regulator AphB [Aliivibrio salmonicida LFI1238]
          Length = 291

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 139/291 (47%), Gaps = 9/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  V  +GS+T A+ +  +  ++I+R+I  LE  + I+L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRQVVDNGSYTAASRKTLIPVATITRRIQALEDSLDIRLLNRHARKLSLTES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K +   S +   L      L E     +GKL IA   +L + ++Q  L +F+L+YP+I
Sbjct: 61  GQKFYDECSPILSNLVNISEYLSEECRGAAGKLNIAAPSNLTKRMIQPILNQFMLIYPNI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L + N+   +     D   R+ K  + SSLI R++ ++     A+P YL+   EP  
Sbjct: 121 NINLTMSNQPEQLDPTDWDIIFRVGKQ-RDSSLIARQIGSLEDILVASPIYLEQRSEPTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QEL  H+L+    L+   + +          +        + +    I   C  G GI 
Sbjct: 180 AQELHDHSLLKGHPLMRWRLTNIE-----GESVTITDAGRFEASELNVIRMACSDGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L+PD ++    ++ +LVR+++D       +Y  Y        K++ F +F+
Sbjct: 235 LMPDIMISKYLEDGSLVRVLKDWSANPRDIYMIYNYKDHQPEKVRLFIDFV 285


>gi|116252847|ref|YP_768685.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257495|emb|CAK08592.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 303

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 129/301 (42%), Gaps = 7/301 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F  D L VF  + R G F  AA +  +S S++S+ I+ LE  +GI+L  R  R ++ TE
Sbjct: 3   QFRLDSLDVFAAIVRCGGFRAAALERGVSSSALSQTINALEEALGIRLLNRTTRSVSPTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L +        +     +L +    PSG LRI        +LL   +  F+  YPD
Sbjct: 63  AGQRLLQRLGPALTDIRLAVDDLNQLKENPSGTLRINAPGPAIDHLLCPAMFTFMDTYPD 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++LI D   IDI     D  +R  K +    +      ++     A+P Y+     PL
Sbjct: 123 IKVELISDAAVIDIVEQGFDAGVRFGKQLAQDMIAVPLGPSLRYAIVASPDYIAKHGLPL 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  HN I         +  + +    D     P    L V+S  + +Q  V G G+
Sbjct: 183 TPNDLAGHNCIR-RRFPGGTLVSWKFEKGGDALEVLPE-GRLTVSSAHNELQAAVAGCGL 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A + +     +     L  +++D      + Y  YP    ++  ++   +F+  ++ DWK
Sbjct: 241 AHIFEDYATPDLTNGRLTEVLKDWTPLLPSWYLYYPSKRHSSAAMRELVSFL--RSYDWK 298

Query: 299 F 299
            
Sbjct: 299 L 299


>gi|298717475|ref|YP_003730117.1| transcriptional regulator [Pantoea vagans C9-1]
 gi|298361663|gb|ADI78444.1| Putative transcriptional regulator [Pantoea vagans C9-1]
          Length = 340

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 123/283 (43%), Gaps = 4/283 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LR F +VAR  +FT AA QL +S+S +S  I+ LE  +G++L  R  R ++LT+ G
Sbjct: 49  NLNDLRAFTIVAREKNFTRAAAQLGMSRSGLSHAITALEARLGVRLLTRTTRSVSLTQAG 108

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +   L++  + L+  S KP+G +RI        ++L   L+  L  +PDIQ
Sbjct: 109 VRLFSTLQPMLSTLDSELVALRALSEKPAGTVRITAHDHAIDSILWPRLQPLLKRFPDIQ 168

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L +D    DI     D  +RL   +    +  R     +M   A+P YL+    P   
Sbjct: 169 IELSVDYSLTDIVAQQFDAGVRLGDIVDKDMIAVRIGPDFYMAVVASPEYLQGRPLPAVP 228

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I         +  ++      +PI          N+   +MQ  + G G A 
Sbjct: 229 ADLTAHQCINLRLPTHGGLYAWD-FEQEGKPITVRVTGQTVFNNTYLMMQAALDGLGFAY 287

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           +P  + + +     L+ ++E         +  Y    +    L
Sbjct: 288 IPLDLAQPHITSGKLIPVLERWWPQFPGYHLYYASRHQQAPAL 330


>gi|237729235|ref|ZP_04559716.1| substrate-binding transcriptional regulator [Citrobacter sp. 30_2]
 gi|226908964|gb|EEH94882.1| substrate-binding transcriptional regulator [Citrobacter sp. 30_2]
          Length = 308

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 134/301 (44%), Gaps = 12/301 (3%)

Query: 1   MS--FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           MS       L  F  +   G  + AA QL++S S++S+ ++ +E  +G  L  R  R +T
Sbjct: 1   MSTPISLKHLEFFTKIVDCGGLSEAAAQLNVSPSAVSKSLAAMEDTLGTTLIKRTTRSIT 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT+ G  L    +++  + + T          P G+LRI  +I  G + L   + ++   
Sbjct: 61  LTDAGQYLFNRANKLLKEFDETLNTTSGYYHSPQGELRITCSIAFGYSRLVNLVDKYRSQ 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +PD+ + + L++  ++++    D A+R+       +   RKLV +     A+P YL    
Sbjct: 121 FPDVNLYIDLNDNFVNLNETDFDIALRISTA-PPQNYAMRKLVPVRWAYCASPGYLAKKG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P    +L  H+ + +  L P            DR         +Q NS L +++  +  
Sbjct: 180 MPQRRSDLVDHDCLVYPGLTPV----LKVADEQDRLHQLKLHMPIQANSSLVLLKSVLED 235

Query: 239 SGIALLPDYIVKDNP---NLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+A LP Y++ D+     +  +M D  +   +  +Y  Y  +  +  K+++F +F+  +
Sbjct: 236 QGVAYLPTYLIGDHIQKEEITPLMLDGTITCETHALYALYFPSKYSNPKVRSFIDFLVAE 295

Query: 294 A 294
            
Sbjct: 296 L 296


>gi|152979317|ref|YP_001344946.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150841040|gb|ABR75011.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 295

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L+VF  V  SGSF+ AA+QL+L  S++S+ +  LE ++G +L  R  R L LT 
Sbjct: 1   MDRIQTLQVFAHVVESGSFSKAADQLNLHVSAVSKAVKYLENQLGSRLLNRTTRSLKLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +     +  +LE T  +L   S +  GKLRI     +   +    L EF   YP+
Sbjct: 61  EGEAFYEKAQFLLAELEETFQDLSGVSQQAKGKLRIEMPTAIAPFMFAK-LPEFQRQYPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L  ++   ++  D  DC +RL + +  +S I R+L  + M   AAP Y+     P 
Sbjct: 120 IQLVLTANDGVSNLIDDGLDCTLRLGE-LADASYIARRLTDVAMQTCAAPSYVAAHGTPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L+ H+++ +     + +  + +                QVN   +++   + G GI
Sbjct: 179 TLADLESHHIVHYVSGSQRKVLPWQFRKKSGETDRFKAAHATQVNDSNALLFAALAGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P+ +++    N  LV ++  + +P+  ++  YP+      +L  F  ++
Sbjct: 239 VQMPELMLRPYLANGELVPVLTALQSPTRPLWLIYPQRQFIPKRLAVFIEWV 290


>gi|70733490|ref|YP_263265.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68347789|gb|AAY95395.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 300

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 125/298 (41%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  VA+   F  AA +L+LS +S++R ++ LE  +G +L  R  R + L+E
Sbjct: 1   MDRFQEMQVFVCVAQEQGFAAAARRLNLSAASVTRAVAALEQRIGTQLLVRTTRKVHLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  +++  +        +P G+L +   +  G   +   L  +L  YP 
Sbjct: 61  AGQRYLEDCRRILAEVQDAEASAAGIHAQPRGQLSLTAPVLFGDLFVTPLLVRYLQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I  +L ++  ++  +  D A+R+ + +  S     ++  +     AAP +L     P 
Sbjct: 121 VSINALLVDRVANMVDEGIDVAVRIGE-LPDSGQHSIRVGQVRRVVCAAPGFLAAHGCPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +  LI            FN      R +       L V++  + +    LG G+
Sbjct: 180 HPDDLRQAPLIAPSSTGQARHWQFN---DAGRALSLRPEPRLLVSANQAAISAACLGLGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +  Y V D      L  ++ D   P   ++  Y    K   ++++F +F     R+
Sbjct: 237 TRVLSYQVADQVAAGQLQIVLADFELPPLPIHVVYQGGRKAPARVRSFVDFAVQALRE 294


>gi|50122575|ref|YP_051742.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613101|emb|CAG76552.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 302

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT+ G K   
Sbjct: 8   EVFVTIIDRGSMIAAAETLDMSRAMVTRYLAEMEAWAGARLLHRTTRKLSLTDAGEKTLV 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+       ++E        SG LR++ +  L Q  L   +  FL  +P + I L +
Sbjct: 68  RCREMLALTADMRVEANTDDATLSGLLRLSCSQSLAQGALGIAITAFLRRHPRVAIDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L        A+P YL     P  + +L  
Sbjct: 128 NNRSVNLVEERIDLALRITNEL-DPNLIARPLANCESVLCASPSYLNEHGIPRQLTDLSI 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+              +  D     P    L  N  L ++   + G+GIAL P Y 
Sbjct: 187 HNCLTYTYFGKSLWH----FSRGDEKFTIPVSGNLSGNESLVLLSGALEGAGIALQPRYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V     +  LV ++ +       +Y  Y    +    L+   +F+  
Sbjct: 243 VTSYLASGQLVALLPEYRPQMMGIYGIYTSRRQMPTALRTLLDFLVE 289


>gi|172062604|ref|YP_001810255.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995121|gb|ACB66039.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 312

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 123/295 (41%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    E+    +   +    G LR++  ID G  ++   +      +P 
Sbjct: 66  AGRAFYDACRDIVRATESALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAIVALRDAHPG 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++LI +++ +D+  D  D AIRL + +  S+    +L        A+P ++     P 
Sbjct: 126 LDVELIANDRVVDLVADNLDVAIRLGR-LADSNHRAVQLGQYEKWVVASPAFVARHGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +      P          T          + +  N+  +     + G G 
Sbjct: 185 DPDALAALPFVMLS--TPSRPHTLELDDTSGGHASVRCTAPVVSNTATACRAIALAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             L D+   ++     LVR++    +    ++  YP     + K++AF + +  +
Sbjct: 243 GFLTDFSTAEDIAAGRLVRLLPAWRSARAGIHAVYPSTRLPSQKVRAFIDAMKAR 297


>gi|107023421|ref|YP_621748.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|105893610|gb|ABF76775.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
          Length = 349

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 9/294 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D  D++R+F  VA  GSF  AA  L + ++++S  +  LET +G +L +R  R + LT
Sbjct: 40  PMDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLT 99

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+ L      +  + +      +       G+L +     + + ++   L      +P
Sbjct: 100 ADGALLLERGRRLLAEADELDRLFRRRDRDVVGRLNVDVPSRIARRVVAPALPSLFRRHP 159

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q+ L   ++ ID+  +  DCAIR+ + +  SSL+ R L    +   A+P YL+ C  P
Sbjct: 160 KLQLSLGSTDRSIDLVQEGVDCAIRVGR-LADSSLVVRPLGQFTLINCASPDYLRECGVP 218

Query: 181 LSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
                L   H  I +    P    +  W    D       + S + VN+  + +  C+ G
Sbjct: 219 EHPDALAHGHWAIGYAS--PTTGRELGWEYCADGQRHTLTLPSRVIVNNAETYIAGCIAG 276

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            G+  +P + V+    +  LV +M         V   YP     + +L AF  +
Sbjct: 277 MGLIQIPRFDVEHLLASGALVDVMPGHRAEPMDVSAVYPHRRHRSRRLNAFIEW 330


>gi|116050842|ref|YP_790335.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586063|gb|ABJ12078.1| putative ranscriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 323

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 132/297 (44%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R F  V   GSFT AA+ L  S +++SRQ++GLE  +  +L  R+ R + +T
Sbjct: 1   MDL-LHGIRTFVRVVEHGSFTQAAQTLGTSPATVSRQVAGLEQALSARLLQRNTRSVVVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +    ++   +     ++++S    SG+LR+    +LG   L   L ++L  +P
Sbjct: 60  ESGLRYYEHCKQILRTVAAAAADVEDSQSHASGRLRLHAVTELGLEHLMPLLVDYLDGHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L L      +  +  D  I L + +  S+L+ R L  +     AAP YL     P
Sbjct: 120 DVSVDLTLAQGTPALLEEGLDVLITLGRTLPDSTLVARDLGQVFSVVCAAPEYLARHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + ++L +H  +      P C + + ++      + +     L+VN   +       G G
Sbjct: 180 RTPEDLLRHRCLNVA--APSCPQGWVFVGERGETLLD-LDEALKVNLPEAACAAAAAGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + LLP ++        +L+R++         V+  Y        K++ + +F+  + 
Sbjct: 237 VCLLPGFVAARALQEGSLLRLLPGHRLHVREVFVLYSSRRYLDAKIRTWVDFLRERL 293


>gi|315182229|gb|ADT89142.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 297

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 133/299 (44%), Gaps = 13/299 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +GSFT AA+ L LS+  ++R +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFVEVANTGSFTKAADNLTLSRLQVTRHVQEIEDWLKQRLLHRTTRKVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++  +    +I   E S   +G +RI+  I L Q+LL   ++ F  L+P 
Sbjct: 61  AGEEALTRCEQILDQTAELEIRALEQSQSLTGSIRISAPIGLAQHLLLDTVEAFTELHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I ++  ++   +  D  D A+R  +     SLI R+L+ +     A+P YL+     +
Sbjct: 121 VTIDILASDRLSQLVDDRVDVALRFTQQ-PDESLIARRLIQVDTVVCASPQYLQTHDPII 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
              +L +HN           + +  W    D      R+S  ++ N    +    +   G
Sbjct: 180 EPADLSRHNCFVH-------LTNHTWDLVRDNQHFSVRVSGTVRANDMEILRSAALHHKG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  LP  +         LV+++ D  +PS  ++  Y      T  ++ F +F+  + +D
Sbjct: 233 VVWLPCDLANPCLRRGELVKVLADYHSPSSHLWAVYLSRSYQTPLVRQFIDFVAERWQD 291


>gi|259909879|ref|YP_002650235.1| Transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96]
 gi|224965501|emb|CAX57033.1| Transcriptional regulator, LysR family [Erwinia pyrifoliae Ep1/96]
 gi|283479963|emb|CAY75879.1| HTH-type transcriptional regulator ptxR [Erwinia pyrifoliae DSM
           12163]
          Length = 302

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 133/288 (46%), Gaps = 7/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V  + S+T AA+ L L++SS+S++IS LE  +G KL  R  R + +TE G
Sbjct: 6   NLHGMIIFAKVVETLSYTEAAKALGLAKSSVSKEISALEVRLGAKLLQRTTRRIQVTEVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     + H++++  + +++   +PSG LR+   +  G   +   L  F+     + 
Sbjct: 66  MTYYHYCYRILHEVKSADLFIRQFHEEPSGSLRVVAPVTFGCQCIVPVLNRFIASNIHVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ ++   D+ D AI + + +       R L+ I    YAAP YL N     S 
Sbjct: 126 VDLDLTDRPVNFEDDHIDLAIAITRNLPEQR-NYRPLMDITWGLYAAPDYLINRTAVTSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I F    P       +     +   E R S  + N+ ++++   V  +GIA 
Sbjct: 185 DDLARHECILFRG--PAHTISLPFRKEKQKKDIEVR-SRFRANNSIALLNSAVAKTGIAY 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LP YI +   DN  LV+++ D     +  Y         + +++ F  
Sbjct: 242 LPSYIAREAVDNGKLVQLLPDWEMDIYKSYVLMKSDSFISPRVRLFIE 289


>gi|37524653|ref|NP_927997.1| DNA-binding transcriptional activator GcvA [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784078|emb|CAE12947.1| Glycine cleavage system transcriptional activator (Gcv operon
           activator) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 306

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 124/293 (42%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S Q+  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQMKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++ +       L   L  F L YP I +
Sbjct: 68  SYYLDIKEIFTAINEATRKLQARSA--KGALTVSLSPSFAIQWLVPRLSSFNLAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +      L   +L   ++    +P  L       +  
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWPGLRTDRLYAEYLLPVCSPSLLTGENSLKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+          +   ++  +D             +    ++Q  V G GIAL 
Sbjct: 185 DLARHTLLHDSSR----RDWQAYVRQLDMQQQINVQQGPIFSHSAMVIQAAVHGQGIALA 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   D   LV    DV+      Y    +     GK+ AFR ++  +A
Sbjct: 241 NNVMARTEIDAGRLVCPFNDVLVSKNAFYLVCHDNQAELGKIAAFRQWVLAQA 293


>gi|261212581|ref|ZP_05926866.1| transcriptional regulator LysR family [Vibrio sp. RC341]
 gi|260838512|gb|EEX65168.1| transcriptional regulator LysR family [Vibrio sp. RC341]
          Length = 293

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 134/300 (44%), Gaps = 15/300 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L +   V  +G FT AAE L +  + +SR +S +E+++G+ +  R  R + LT
Sbjct: 1   MRTKSDDLEILLTVVDTGGFTAAAESLDIQVARVSRAVSKVESQLGVTILNRTTRRIELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +          +L+  + E+      P G+LR+        + L   ++ F   YP
Sbjct: 61  DEGRQFVESVRIGLMQLQQAEDEIISRGELPKGRLRVDAASPFVFHQLVPLVQPFNQAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  +   +D+     D AIR+   +  S+L  R L    ++  A+P YL     P
Sbjct: 121 DIELELTSNEGFVDLLEKKTDIAIRIGA-LNDSTLHARPLGRSLLYIVASPDYLSKRGFP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L+ H+ I F    PK + ++                 L  ++  ++ Q  ++G+G
Sbjct: 180 SKSSDLEHHDTIGFS--TPKTLNEWPLKGFSGL------TPTLTSSNGETVRQLALMGNG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L  ++VK +     L+ ++E     +     +   Y ++     ++ AF +FI  K 
Sbjct: 232 IACLSGFMVKKDIAEGRLIALLEGEKIGNSGREQINAVYYKSSSVAKRISAFIDFIQPKL 291


>gi|167839047|ref|ZP_02465824.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 305

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 132/302 (43%), Gaps = 7/302 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V   GSF  AA++L +SQS+I+RQ++ LE ++G +L  R  R L++T+
Sbjct: 1   MDKLQSMRSFVQVVDDGSFVRAADRLGISQSAINRQVTLLEQQLGERLLIRKTRELSVTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  KL+  +  +   + +P+G LRIA    L    L   L ++   Y D
Sbjct: 61  FGRSYCARIRDILKKLDALERAVLAPTRRPAGTLRIAVLASLSLEHLASCLYDYCKTYSD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +    +L ++  D+  +  D  I  R  +  +SL+ R +      A A+P YL    EP 
Sbjct: 121 VLPMPVLVDRPTDLVREGYDVGIIDRSSVSCTSLVVRTIYNTPRIACASPAYLTRHGEPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
             ++L  H  +T            +    V  P G   + C   L VN+   ++Q  + G
Sbjct: 181 RPEQLTDHVCVTMSAARVSGTRHTHSEMLVTGPDGSTMLKCRPALVVNNVDFLVQMILSG 240

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +GI  +   +V+       L  ++    +P  T+   YP       K++ F + +     
Sbjct: 241 TGIGFVEPALVRSAIQKGTLKPLLPGYSSPGPTICVAYPSRHHLPPKVRTFVDHLLATFE 300

Query: 296 DW 297
            +
Sbjct: 301 TY 302


>gi|237808732|ref|YP_002893172.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500993|gb|ACQ93586.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 317

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 134/290 (46%), Gaps = 5/290 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR GSFT AA  + ++ +++S+ ++ LE  +G++L  R  R L+LT +G+      
Sbjct: 13  FVHAARLGSFTAAARLIDVTPAAVSKNVAALEASLGVRLMNRTTRSLSLTAEGTLFLSQA 72

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 LE     L  +   P G +R++    +G+ LL   L + L L+P + ++L  D+
Sbjct: 73  QLALESLEQAVESLTTAKSNPVGLVRMSVPNVIGRRLLMPVLPDLLALHPGLNVELDFDD 132

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +D   +  D  +R    I  SS+I R L  + +   A P YLK    P    +L KH 
Sbjct: 133 RLVDFVQEGYDLVVR-GGTIHDSSMISRSLGPLKLGLVATPDYLKKFGVPKQPGDLSKHK 191

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           LI+   L  K              + EPR + + ++   +++Q  + G GIA +  Y+  
Sbjct: 192 LISRRFLGSKLSPWTFHQPDGKVFLFEPRSTAITLSDPEAMIQAALSGLGIAEVGIYLAW 251

Query: 251 DN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++     L  I+ D   P +F +   YP       +++A  +F+    R+
Sbjct: 252 EHLQSGALKLILHDSHDPGAFELMLQYPHRALLAPRVRATADFLLEVLRN 301


>gi|290511282|ref|ZP_06550651.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289776275|gb|EFD84274.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 299

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 136/301 (45%), Gaps = 16/301 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGTISAAARKLEITPPSVSNALKLLEEHIGHPLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+     LET+   L++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTAAAVEVLETSLESLRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           ++ + +  ++I  +  D  IR    ++   ++ R L+       YA+  YL     P   
Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILE-GGVVARPLMKPFREGLYASSAYLAEYGVPAVP 184

Query: 184 QELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +L+ H LI +       ++P  + D     TV+ P        L  N    +      G
Sbjct: 185 ADLNHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI  L + I +   D    + +MED       VY  YP+    T ++KA  +F+     
Sbjct: 239 LGIGRLFEPIWRLQPDREQFIPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFLIAHTA 298

Query: 296 D 296
           +
Sbjct: 299 E 299


>gi|123440858|ref|YP_001004849.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087819|emb|CAL10605.1| putative LysR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 302

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 129/294 (43%), Gaps = 8/294 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F   A++ +F+ AA QL ++ ++IS+ +  LE ++ ++LF R+   + LT++G  
Sbjct: 9   RLLPAFLSAAQNENFSVAARQLGVTPAAISKNVRVLEEKLALRLFQRNTHSVVLTDEGKA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + ++  L  T   ++     PSG +R++     G+ LL   + +F+  YP I + 
Sbjct: 69  LLARVAPLWQALSHTLDTVRNDEQHPSGTVRVSLIPGFGRQLLMPLIPKFMARYPQIDLD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+ + +++  +  D  I        S LI R+   + M   A+P YL     P + Q 
Sbjct: 129 LSLEARVVNLVGEGFDVGIG-THIDPDSRLIARQFYPMQMVLAASPAYLARYGTPSNPQH 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALL 244
           L +H  +   +  P       WL   +  +    +S  L ++    +M   +   GI  +
Sbjct: 188 LYQHQCLLHRN--PSTGRIVKWLLQHNNEVQSFELSGRLVISQPEVLMNAALADMGITYI 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  +    + +LV ++         ++  Y  A     +++ + +F+    R
Sbjct: 246 AQWHAEPHFADGSLVPVLAHHWPAPVPLWLYYASAD-LPPRVRVWVDFLLEHFR 298


>gi|160876916|ref|YP_001556232.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160862438|gb|ABX50972.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315269120|gb|ADT95973.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 300

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 15/297 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG + 
Sbjct: 6   AIRSFVEVANCGSFTKAAEHLDLSRLQVSRHIQEVEQWLSLRLLHRTTRSVSLTLQGEEA 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ ++P + IQL
Sbjct: 66  LQFCQRILSEVAAMESRAHSHNSELVGSIRIATPIGLGQHSLFDVVDRFIKIHPKVSIQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +    +  +  D A+R  +     +LI R+L+TI     AAP YL +    +   +L
Sbjct: 126 VMSDSFAQLVDERVDVALRYTEQ-PDENLIARRLMTIDAVICAAPSYLDSNTPLVEPIDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN +             NW    +      +++  L+ N    ++   + G GI  LP
Sbjct: 185 LAHNCLIHS-------AQQNWPFLKELQAEHVKVTGNLKANDMGVLVSAALRGHGIVRLP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +      +  L  ++ +  TP  T++  Y         ++AF +F    A+ W+ 
Sbjct: 238 CDLANQYLASGQLKEVLPNFTTPGQTLWAVYLSRSYQQNLVRAFIDF---TAQQWQL 291


>gi|329997062|ref|ZP_08302689.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328539177|gb|EGF65208.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 327

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +   V   GS + AA  L++  +++SR I  LE+ +G++L  R  R LTLT+
Sbjct: 24  MDRLSAMALLVKVTELGSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTD 83

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  ++E  + +      +P G+L I+     G+  +   + EF+  YP 
Sbjct: 84  AGVDYVAAARRILEEVENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPL 143

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L+L +++ D+  D+ D A+R+   +  SS++  +L T+ + A A P  L    EP 
Sbjct: 144 IRVRLLLSDRNADLVSDHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQ 202

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L    +I     +P     F      D+ I  P +  L V +  S      LG G+
Sbjct: 203 RPRDLAALPIIRIESPMPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGV 260

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A L  Y   D   +  L  ++E+V      V+  Y        KL+ F +F     R 
Sbjct: 261 ARLLHYQALDGLRHGELRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDFAAPALRQ 318


>gi|325928957|ref|ZP_08190118.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325540646|gb|EGD12227.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 308

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 124/293 (42%), Gaps = 8/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +   V   GSF+ A   L   +S +SR+++ LE  +G++L  R  R ++LTE G
Sbjct: 3   DLNDFALLVAVVDHGSFSAAGRALGFPRSKVSRRVADLEQRLGVRLLQRSTRAVSLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ +     +    +      + ++  PSG++R++    +    L   L  FLL +PD+Q
Sbjct: 63  AEFYTHCKSITRSAQWALDVAERATQHPSGRIRVSCPTGVAHLFLAKLLPRFLLAHPDVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +++  +  D AIR+R  +  S LI R          A+P ++       S 
Sbjct: 123 VDLELTSRRVELIAEGIDVAIRVRSSLDDSGLILRSFGVSRQALVASPGFVHAHGPFASA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLGSGI 241
             L  H ++  G       E   W  T  +   E     S L       +    + G G+
Sbjct: 183 AAL--HEVLGMGPR-GVNGEPPRWRLTSPQGTSELVDYRSRLFTEDVELLHHAALAGMGV 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A LP  + + +     LV ++ D   P   ++  YP        ++A   F+ 
Sbjct: 240 AQLPLALCRGSIARGELVVLLGDHTLPVHQLHAVYPSRRGLAPGVRALIEFLV 292


>gi|259415379|ref|ZP_05739300.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259348609|gb|EEW60371.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 304

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 130/293 (44%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R F  V   G+ + AA  + +S +  S +IS LE  + ++LF R  R L  TEQG 
Sbjct: 4   LNNIRTFVRVYELGNMSAAARDMRISAAVASSRISQLEEHLKVRLFQRTTRLLHPTEQGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   +E  + ++   +  P G L +A  + +GQ L+   + +F   YP I I
Sbjct: 64  LFYHGAVKILEAVEEAEADISNVTQTPRGTLYVAAPLGVGQRLIAPAVPQFNAAYPLINI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +D++ +  D A  L  P + S+L  RK+        A+P Y+K    P S  
Sbjct: 124 RLRLSDRKLDLAAEGLDAAFFLGLP-EDSNLKIRKITDCPRVLCASPAYIKARGMPTSSA 182

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           EL  + H+ +           +F W       I    +S   + +    + Q+ + G GI
Sbjct: 183 ELKTEAHDCLNLRY---PGAPEFQWPLHGPEGIRRVAVSGPYESDHGDVLTQWALDGHGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L P + + ++     LV ++ D    +  +   Y        K++ F +F+ 
Sbjct: 240 ILKPVFEISEHLASGRLVPVLPDEPPATIQMACLYMHRRHQDPKVRLFLDFMV 292


>gi|260464022|ref|ZP_05812217.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259030193|gb|EEW31474.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 296

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/302 (26%), Positives = 142/302 (47%), Gaps = 15/302 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L  F  V  +GSFT AAE+L ++++ +S+Q++ LE E+   L  R  R L  TE
Sbjct: 3   PINLNRLAYFATVIDAGSFTRAAERLGITKAVVSQQVARLEAELQTTLLVRTTRRLEPTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  LH     +   +E    E+ E + + +G LR++ + D G  +L      F   +P 
Sbjct: 63  AGRLLHARCVMILRDVEEAVAEVAEGNTEVAGVLRVSASNDYGAIVLAPIAARFRQEFPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L + +  ID+     D +IR+   ++ SSL  R++ T      A+  +        
Sbjct: 123 CGVELFISDAIIDLIGSKMDLSIRVGW-LEDSSLQARRIGTFRQILVASRDFAAKV-TVD 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVL 237
             ++L    L+    L     + F W  T  R   EPR   ++    +NS  ++++  + 
Sbjct: 181 EPEDLASLPLVANSVL----RKPFTWSFT--RGDVEPRTVTMRETFSINSTPAVLEATLA 234

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+A+LPDY++ D      LV ++ D   PS  ++  YP A     K+  F + +  + 
Sbjct: 235 GGGLAVLPDYLIADYLSQGRLVHMLSDWALPSGGIHVVYPAARFRPQKVTRFVSMLMEQI 294

Query: 295 RD 296
           R+
Sbjct: 295 RE 296


>gi|171315659|ref|ZP_02904893.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171099191|gb|EDT43964.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 300

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 130/300 (43%), Gaps = 7/300 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D +R+F  V   GSFT A+ +L +  S +SR++  LE ++G++L YR  R +++TE 
Sbjct: 1   MNLDSIRIFLRVVERGSFTAASVELDMPLSRVSRKVKHLEDDLGVQLLYRTTRRVSVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     +++     P G LR+     +G   L+  L EF   +P +
Sbjct: 61  GRDYYERCLRAEDILLDADRQVRTLRTDPEGTLRVLVPYAIGLFQLEPALAEFRRRHPLV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R  + +  S  + R L   H    A+P YL     P +
Sbjct: 121 QLVLIYDNSPLDLVEHGFDVALRAGQ-LNDSGYVARSLGWSHAKLAASPAYLDRTGRPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H+++  G   P      +   T       P    L  N  +++++    G GIA
Sbjct: 180 PNDLAQHDILFVGRDAPGLTLRLS--NTDGEVADVPVQPVLISNESVTVLRQATSGGGIA 237

Query: 243 LLPDYIVKDNP---NLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           L+  +          L  ++ D   T    ++  YP       K++AF  F+      W+
Sbjct: 238 LISTHFTARRLARNELEIVLPDWHRTNDVELHVLYPRRATLDSKVRAFVEFMTELFATWR 297


>gi|50086594|ref|YP_048104.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49532568|emb|CAG70282.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 308

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 122/294 (41%), Gaps = 11/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +A+ GS T AA+QL+ S++ +SR +  LE    ++LF R+ R ++LT 
Sbjct: 12  MDTLKAIQVFVTIAQQGSLTKAADQLNYSKAMVSRYLDHLEHVYSVRLFQRNTRKISLTP 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K       +  +     +    +  + SG +R+   + L Q  L   L+ F   YP+
Sbjct: 72  YGEKALHYCENILQQHN--LLHDLAAHEQQSGVIRLTCGLFLYQLGLNRCLRAFKTEYPE 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ  L L    +D+     D A+R+ + +    LI R +  I     A P YL       
Sbjct: 130 IQFDLSLTENALDLIDGNIDLALRITQKVAD-GLIARPIFDIASTFCAHPDYLAQYPTLS 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  IT         + +       +P   P  S  + N   ++   C+   GI
Sbjct: 189 HPSQLMQHQCITHQS----HSQYWTMTDNEQQPQNYPINSSFKSNDVNALYDMCLHAQGI 244

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP  +VKD+     L+RI+ D       +   Y          +    F+  
Sbjct: 245 AMLPTLMVKDDLAAGRLIRILPDFSAVDLPLSLVYASREHLPQMTQLLIAFLIE 298


>gi|288937213|ref|YP_003441272.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290512623|ref|ZP_06551989.1| HTH-type transcriptional regulator ltrA [Klebsiella sp. 1_1_55]
 gi|288891922|gb|ADC60240.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289774964|gb|EFD82966.1| HTH-type transcriptional regulator ltrA [Klebsiella sp. 1_1_55]
          Length = 309

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 120/299 (40%), Gaps = 11/299 (3%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    L +F  +   GSF+  A Q  L+ S++SR +S LE E+G KL +R  R L L
Sbjct: 1   MNLNLLPDLALFVQIVDQGSFSAVARQSGLTPSAVSRSVSRLEREMGSKLLHRTTRKLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           ++ G  +++   ++                   GKL ++    +G+ ++   +  F   Y
Sbjct: 61  SDAGETVYQHAQQMLEAARQAIDSASSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L L+++ +D   D  D A+R+     S  L  + L+ I     A   YL+    
Sbjct: 121 PQVDVCLRLEDRPLDFIDDGIDLALRITD-TPSPGLHGKPLMPIRHVICATEPYLQQHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + Q+L  H  I+ G+        F       +            N     +       
Sbjct: 180 PYTPQDLRAHCCISLGETPADARWKFR---REGKSETVQTYGRYAANHTAVRLDAVKQHL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  LP +  ++     ++V+++ +     + S  ++  +        +++   +++  
Sbjct: 237 GIGSLPLFTAREALAKGDIVQVLPEWEFISSYSGDLWLLWAGDKHMPARMRVMIDYLSE 295


>gi|90425221|ref|YP_533591.1| DNA-binding transcriptional activator GcvA [Rhodopseudomonas
           palustris BisB18]
 gi|90107235|gb|ABD89272.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 314

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 116/292 (39%), Gaps = 8/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LR F   AR  SFT AA +L+++Q++IS QI  LE E+GI+LF R  R L LT Q 
Sbjct: 7   SLNGLRAFEAAARHLSFTSAAAELNVTQTAISHQIRRLEEELGIQLFVRQNRTLALTPQA 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                     ++ L      L          L I+T   L    L   L  F   +P I 
Sbjct: 67  RDYLPGVRAAFNDLRLATDRLLRKDAAC--VLTISTLASLAAKWLLPRLSAFQEAHPAID 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++      +D      D AIR  +  Q   L    L+   +    +P  L+  +   S 
Sbjct: 125 VRITTSTALVDFRKGDVDAAIRYGRG-QWPGLRADWLMADQLFPVCSPALLQGKKPLRSP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L +H+L+              WL     P    +   L  +     +Q  + G G+A+
Sbjct: 184 QDLAEHSLLYSSGGYDDDWRL--WLTAAGLPADISKQPGLSFDLIFMTVQAAIDGLGVAI 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                V+ +     LV   +  +   +  Y   PEA   T KL AFR ++  
Sbjct: 242 GRTSYVEADIAKGRLVVPFQIKLPDEWGFYLVSPEARAETPKLSAFRQWLLA 293


>gi|325121178|gb|ADY80701.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 326

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G
Sbjct: 6   NLSDLKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +Q
Sbjct: 66  KLILERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHIAPILSKLMMLYPKLQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I     +   D+     D  IR+   I + ++I +KL +      A+P YL     P SI
Sbjct: 126 IHFDTIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCASPSYLLKHGVPDSI 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ +T  +     +      A+ D  +          N+   I Q  + G GI  
Sbjct: 185 EDLQTHDCLTISERDQSSVLWKFRHASEDVSVHIK--PRFVSNNGEIIHQLAIEGHGIIF 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D      L  I+ +    +  V+  YP  LK++ KL+    FI
Sbjct: 243 RSIWDVADELITGQLQHILPEYWQDA-DVWAVYPSRLKSSSKLQTCILFI 291


>gi|300696872|ref|YP_003747533.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299073596|emb|CBJ53116.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           CFBP2957]
          Length = 305

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 123/293 (41%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LE ++G +L  R +  + +T  G 
Sbjct: 4   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAELEAQLGTRLLQRSSHRVCVTPVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + L+ G L EF   +P ++I
Sbjct: 64  AVYRHAREMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLVSGWLAEFAQAHPKLRI 123

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L + N  +D+     D AIR    P+ S  ++ R L         +P  +    EP S 
Sbjct: 124 ELEVSNPYVDLIEQRIDVAIRAATGPLPSRDVVARHLGASPRVLVGSPALISRMGEPDSP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             LD    +  G L      D+            P    +  ++ +++ +  + G G A+
Sbjct: 184 AGLDALPCLGQGTLAR--CRDWVLFDARGHRHALPIRPRMATDNLIALREAAIAGLGFAV 241

Query: 244 LP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP    +       L  ++         ++  YP        ++A  +F+  +
Sbjct: 242 LPLHCCHAALREGQLRTVLPAWTPEPADLHALYPSRAGVPPSVRALVSFLRER 294


>gi|239503529|ref|ZP_04662839.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB900]
          Length = 296

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 130/296 (43%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT 
Sbjct: 1   MDRLDCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLNRTTRQMNLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K ++    +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP 
Sbjct: 61  CGEKFYQHCKVILSEFEWATYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREP 180
           I+I L + ++ +D++    D  IRL     + SL   K++ T   + YA P Y      P
Sbjct: 121 IKIDLFMTDQLLDVNQHKFDLTIRLDG--SAPSLANSKILNTYQRYLYATPEYFNQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL +H  + +          F       + +       +  N+   ++  C+   G
Sbjct: 179 TSLEELKEHKFLIYYQDSRHKKLIFQ---KDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+  +
Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFLTRQ 291


>gi|213583244|ref|ZP_03365070.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 296

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 134/287 (46%), Gaps = 7/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T +G + 
Sbjct: 1   AMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTAEGRRY 60

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP++++ L
Sbjct: 61  YEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPELELIL 120

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P ++ +L
Sbjct: 121 CSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPENLDDL 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G+  + 
Sbjct: 181 QKHHAVGY--LNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLIRVA 238

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            Y+V     +  LV  M++       +   YP+    +  ++AF ++
Sbjct: 239 SYLVAPYLHSGALVTCMDNHF-YDLPLALVYPQNRFLSPAVRAFYDW 284


>gi|304411266|ref|ZP_07392881.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307306549|ref|ZP_07586292.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304350459|gb|EFM14862.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306910840|gb|EFN41268.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 329

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 138/295 (46%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  
Sbjct: 1   MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  ++ +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P +
Sbjct: 61  GSHFYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I  ++ +D+     D A  +   + +  L+ R + T  +  YA+P YL     P +
Sbjct: 121 TLEVISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAAHGTPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +E++ HN+  F     K    FN L          R      NS    +++ + G GI 
Sbjct: 181 PKEIEAHNVSMFRLSNGKI---FNELFIGSEQEVRVR-GNFCSNSIEVAVEFGLQGRGIV 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P  +V +   +  LV ++ ++       +  YP     +   + F ++I  + 
Sbjct: 237 YAPAEVVDEYVQSGELVTLLPEIQPHQGECFLAYPSRRYVSLACRRFIDYIMQEL 291


>gi|206563608|ref|YP_002234371.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039648|emb|CAR55617.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 300

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 7/300 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D +R+F  V   GSFT A+ +L +  S +SR++  LE ++G++L YR  R +++TE 
Sbjct: 1   MDLDSIRIFLRVVERGSFTAASVELDMPLSRVSRKVKHLEDDLGVQLLYRTTRRVSVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +         L     +++     P G LR+     +G   L+  L EF   YP +
Sbjct: 61  GRDYYDRCLRAEDILLDADRQVRTLRTDPEGTLRVLVPYAIGLFQLEPALAEFRRRYPLV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI DN  +D+     D A+R    +  S  + R L   H    A+P YL     P +
Sbjct: 121 QLVLIYDNSPLDLVEHGFDVALRAGL-LNDSGYVARSLGWSHAKLAASPAYLDRTGRPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H+++  G   P      +   T       P    L  N  +++++    G GIA
Sbjct: 180 PDDLAQHDILFVGRDAPGLTLRLS--NTDGERADVPVQPVLISNESVTVLRQATSGGGIA 237

Query: 243 LLPDYIVKDNP---NLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           L+  +          L  ++ D   T    ++  YP       K++AF  F+      W+
Sbjct: 238 LISTHFTARRLARNELEIVLPDWHRTNDVELHALYPRRATLDSKVRAFVEFLTELFATWR 297


>gi|37525157|ref|NP_928501.1| hypothetical protein plu1189 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784583|emb|CAE13483.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 304

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 133/287 (46%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF ++   GS   A+E+L +S++ +SR ++ +E   G++L +R  R ++LT  G   ++
Sbjct: 8   QVFTIIVEQGSMIAASERLDMSRAMVSRYLAEMEKWAGVRLLHRTTRKISLTSAGEIAYQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            + ++    E   +     + + SG LRI+++  L  + L   + EF+ +YP I I + +
Sbjct: 68  RSRKLLQLSEEIPVHQPVEAQELSGLLRISSSQSLAVSALSVAIPEFMQIYPQIAIDMQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            NK I++  +  D A+R+   ++  +LI R L T H    AAP YL     P    +L  
Sbjct: 128 SNKAINLVEERIDLALRITNNLE-PNLIARPLSTCHSVVCAAPCYLAGKMLPQKPADLAL 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+                       P    L  N  + +M+  + G+GIA+ P Y 
Sbjct: 187 HNCMTYNFFGKSLW----LFEHRGEKYSVPVSGTLSANESMVLMEATLQGAGIAMQPYYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V     +  L++++ +    +  +Y  Y         L+A  +F+  
Sbjct: 243 VASHLASGKLIQLLPEYRPQAMGIYGIYASRQNMPATLRALLDFLVQ 289


>gi|148253791|ref|YP_001238376.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405964|gb|ABQ34470.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
          Length = 303

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 136/297 (45%), Gaps = 13/297 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L  F  V  + SFT AA +L +S++ +S+Q++ LE E+   L  R  R +  TE
Sbjct: 3   PINLNRLVYFAAVVDAASFTRAAGRLGISKAVVSQQVAQLERELRTDLLVRTTRRVEPTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  LH   + +  + E+   EL +++  P G LRIA   D G   L   +  F   YP 
Sbjct: 63  AGRLLHARCAAILREAESAMAELAQTNAAPMGLLRIAAPNDYGTCTLAPIVTAFSRAYPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +++LIL +  ID+     D +IR+   +  S+L  R++ +      AAP+ +K      
Sbjct: 123 CRVELILSDSKIDLVASQIDLSIRVGW-LDDSTLQTRRIGSFRQLLVAAPNAIKRV---A 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS 239
             ++L     I    L     E   W  T      E       L +N+  +++   + G 
Sbjct: 179 HPRDLAALPFIANTALK----EPLTWQFTKGSAAREIVQMSQTLTINTTPAVLAATLAGG 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+A+LPD+++ D+     LV I+     PS  ++  +P A     K+ AF   +  +
Sbjct: 235 GLAVLPDFLIGDDLAAGRLVPILPSWTLPSGGIHAVFPAARFRAPKVTAFVAMLMDE 291


>gi|325291697|ref|YP_004277561.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325059550|gb|ADY63241.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 305

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 130/288 (45%), Gaps = 5/288 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   VA   SF  AA +L ++ S++S  +S LE  +G++L +R  R ++ TE+G 
Sbjct: 15  LSQLAVLAAVAEGRSFRKAAAELAIAPSAVSHAVSSLEASLGLRLLHRTTRSVSPTEEGR 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L         +++     L E   +P+G LRI       ++L+   L EFL LYPDI +
Sbjct: 75  RLLETLGPALAEIDAVIDTLAEHGGRPAGPLRITLPRLAAEDLIMPRLGEFLRLYPDISL 134

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D++  DI     D  +RL + +++  +  +           AP Y +    P   +
Sbjct: 135 EISTDDRFEDIVAKGFDAGLRLGENLEADMIAVKASGPWRGAIVGAPTYFEENLPPREPR 194

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I         +     L    RP+       L ++    I +  + G+G+A +
Sbjct: 195 DLMRHRCIL--RRFSSGLLYRWELEKDGRPLVVDVQGPLILSDQSLIRRAAIDGAGLAFV 252

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +  V D+     LVR++ED   P    Y  YP   +    L+AF +F
Sbjct: 253 FEQRVDDDIKEGRLVRVLEDWCAPFDGFYIYYPSRRQMRPALRAFVDF 300


>gi|149919354|ref|ZP_01907836.1| putative transcriptional regulator protein, LysR family
           [Plesiocystis pacifica SIR-1]
 gi|149819854|gb|EDM79278.1| putative transcriptional regulator protein, LysR family
           [Plesiocystis pacifica SIR-1]
          Length = 306

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F  V   GS + A+ +L + ++++SR+++ LE  +G++L +R  R + LT+ G + 
Sbjct: 11  ELQAFVAVVEGGSISGASRELSVPRATVSRRLALLEERLGVRLLHRTTRKMRLTDAGVEF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R   E+   ++  +  +++   +P G LR++          +  L  F   YP+++I+L
Sbjct: 71  YRHAREIVLAVDAARAAVRQGDGEPRGLLRVSVPPT--DVRFREVLCAFAERYPEVEIEL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I+  +  D+     D A R    +    LI R + T+ + A A+P YL+    P ++ EL
Sbjct: 129 IVSTRHEDLIARGIDVAWRAAADL-DPGLIARGMRTLELIAVASPAYLEAHGCPRTVDEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
           D H  +   +   +    +       R  G  R+   L  N  + +    + G GIA+LP
Sbjct: 188 DAHACLLGFEGGERPETHWPL-----RDGGRVRVRGRLVTNELMLVRDAVLRGLGIAMLP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              ++   D+  LV ++ +++     +   +P+       ++AF  F+  +
Sbjct: 243 ALTIQQALDDGRLVPVLPELVGGQAKIALVFPDRKLLEPAVRAFIEFMAER 293


>gi|197286147|ref|YP_002152019.1| DNA-binding transcriptional activator GcvA [Proteus mirabilis
           HI4320]
 gi|227357267|ref|ZP_03841624.1| glycine cleavage system transcriptional activator (LysR-family
           transcriptional regulator) [Proteus mirabilis ATCC
           29906]
 gi|194683634|emb|CAR44550.1| glycine cleavage system transcriptional activator (LysR-family
           transcriptional regulator) [Proteus mirabilis HI4320]
 gi|227162530|gb|EEI47519.1| glycine cleavage system transcriptional activator (LysR-family
           transcriptional regulator) [Proteus mirabilis ATCC
           29906]
          Length = 306

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 131/295 (44%), Gaps = 10/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDSAARHLSFTKAAEELFVTQAAVSHQIKTLEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +L   S    G L ++ +       L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSSINEATRKLLARSA--KGALTVSLSPSFAIQWLVPRLSGFNQAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +    + L   +L   ++    AP  L   +   +  
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWTGLRTDRLYAEYLIPVCAPSLLTGEKPLKTPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   D   +  + +     +   I   +      +    ++Q  V G G+AL+
Sbjct: 185 DLIYHTLLH--DTSRRDWQAYVRQLEIQNQINVQQGPIF--SHSSMVIQAAVHGQGVALV 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            + + +   ++  LVR  +DV+      Y    ++    GK+ AFR +I  +A +
Sbjct: 241 NNVMARSEIESGRLVRPFQDVLVSKNAFYLVCQDSQAELGKIAAFRQWILSQAAN 295


>gi|283832805|ref|ZP_06352546.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291072493|gb|EFE10602.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 305

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 133/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F   AE+L +S + IS++++ LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAVAEELGVSPAFISKRVALLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   ++    EL +    P G LRI ++   G+ ++   L       P +++
Sbjct: 67  RIYEWAQRILQDVDQMMDELSDVRQIPQGMLRIISSFGFGRRVVAPALSALAKECPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ +D+  +  D  IR+   I + +LI RKL T +    A+P ++     P  + 
Sbjct: 127 RFDVEDRLVDLVNEGVDLDIRIGDDI-APNLIARKLATNYRILCASPEFVAQHGVPKQLN 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           +   +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLSTFPCLVIKERDHPFGIW--QMRNKEGAHSIKVTGPLSSNHGEVVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V D   + +L+ I+ +   P+  ++  Y   L  + K++    ++
Sbjct: 244 SWWDVCDNIASGHLMHILPEYYQPA-NIWAVYVSRLATSAKIRITVEYL 291


>gi|307297154|ref|ZP_07576967.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306877378|gb|EFN08609.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 298

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 131/295 (44%), Gaps = 18/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L  F  VA + SFT AA  L +S + +SR +  LE  +  +LFYR  R + LT+ G 
Sbjct: 4   WEGLDEFMAVAAASSFTGAARSLSVSTTHVSRAVMALEQRINAQLFYRTTRTVRLTDTGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +     + E   +P+G+LR+  +  +G+  +   ++ F + +P + +
Sbjct: 64  VFLEQCRRIAAETDEAIAHIAEQ-GEPAGELRVTCSTAMGERYVAPLIRRFAMHHPRLSV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N+ +D+  +  D AIR    I    LI+ ++ +  ++  AAP YL     P +++
Sbjct: 123 SIELTNRVVDLMTEDFDLAIRTG-TISDPRLIKTRIASRRLYTCAAPDYLARAGRPTTVE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           E+  H  I             +W   VD   +        + NS  +++  CV G GI  
Sbjct: 182 EIGAHECIG--------GTSGSWHFKVDGVEVAHRPSGRFRCNSGHAVVDACVAGLGICQ 233

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP++ V     +  +  I+ED       ++  YP+      K     +F+    R
Sbjct: 234 LPEFYVLPHLQHGMVELILEDCRPDDEPIWAVYPQRRHLVPK----IHFVVEHLR 284


>gi|299771324|ref|YP_003733350.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298701412|gb|ADI91977.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 326

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 128/290 (44%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G
Sbjct: 6   NLSDLKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +Q
Sbjct: 66  KLILERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHIAPILSKLMMLYPKLQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I     +   D+     D  IR+   I + ++I +KL +      AAP YL     P SI
Sbjct: 126 IHFDTIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCAAPSYLLKHGVPDSI 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ +T  +     +            +          N+   I Q  + G GI  
Sbjct: 185 EDLQTHDCLTISERDQSSVLWK--FRHTSEDVSVHVKPRFVSNNGEIIHQLAIEGHGIIF 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D      L  I+ +    +  ++  YP  LK++ KL+    FI
Sbjct: 243 RSIWDVADELITGQLQHILPEYWQDA-DIWAVYPSRLKSSSKLQTCILFI 291


>gi|317053222|ref|YP_004118989.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952961|gb|ADU72433.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 299

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 129/295 (43%), Gaps = 9/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF    + GSF  AAE++ +S   ++R I+ LE ++  +L  R  R  +LT  GS+  
Sbjct: 8   MRVFVAAVQMGSFVAAAEKMGMSPQMVARHIATLEKQLATRLLSRTTRKQSLTSTGSQYF 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   ++  + E   ++  P+G +R+   +  G+  L   L +F+  YP I I+L 
Sbjct: 68  RRCLTILQAIDDAENEASGTAEVPAGTIRVNAPVTFGRYALVNFLTQFIEDYPHINIELT 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  I+ S+   D  IR+    ++  L+ + LV   +   A+P YL    +P    EL 
Sbjct: 128 LADDVINASVAGFDAVIRIGDLDKNLRLVAKPLVAYRLIVCASPEYLIKNGKPQHPTELR 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI------ 241
            H  I F              A+ D        S L VN + ++++  + G+G+      
Sbjct: 188 HHQCIGFSPWQEAGSTHLWPFASQDGQSNIEVSSRLTVNDWGAMLEAALKGAGVLIGYEK 247

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           AL P      +  LV ++ +   P   ++  Y  +     +   F N +    R+
Sbjct: 248 ALHPLL---HSGRLVALLAEYRIPEQAMHLLYDASRAREKRCNVFFNALCEYFRE 299


>gi|59713602|ref|YP_206377.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59481850|gb|AAW87489.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 311

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VV   GSFT AA++L ++ S++S+ I+ LE  + +KLF R  R L +TE G K+
Sbjct: 12  DLATFIVVVNEGSFTAAAKKLGVTPSALSKLITRLENALSVKLFERTTRSLLITESGKKI 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++ +  +    +            PSG L +A        +LQ  +  FL  YP IQ++L
Sbjct: 72  YQQSVIMVEAAQQAVDISSSEHTVPSGSLTVAAPKAFLTIVLQPLITPFLTKYPKIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DID+     D   RL     +  L+ +++  +++   A+P YL+    P   QEL
Sbjct: 132 RASDGDIDMIAQGIDVVFRLTDK-PTEGLVMKEIGKVNLSLCASPTYLEERGIPHLPQEL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +  G+     + +F                   VN     +     G GI + PD
Sbjct: 191 ANHDCLFLGETTTDHIWEF---VKGTESHVIAVSGRYAVNHSQMRLNGVKDGFGIGIFPD 247

Query: 247 YIVKDNP---NLVRIMEDVITPSFTVYFC----YPEALKNTGKLKAFRNFIFL 292
           +++K+      ++ ++ D        +      Y +      +LK F  F+  
Sbjct: 248 FVIKEALANNEVISVLSDWQI-KGNYHGVIAMQYAQNKYIPSRLKVFTEFVKE 299


>gi|255587258|ref|XP_002534204.1| penicillin-binding protein, putative [Ricinus communis]
 gi|223525731|gb|EEF28198.1| penicillin-binding protein, putative [Ricinus communis]
          Length = 606

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 6/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF  VAR GSFT AAE L ++ +S S  +  LE  + + L  R  R + LT
Sbjct: 273 MDRVLHAMSVFTHVARMGSFTAAAEALGVTAASTSTVVRQLEARLNVTLLQRSTRSMRLT 332

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G++ +     V   ++  +  L+ SSV P G++ I    ++   ++   + +FL  YP
Sbjct: 333 TEGTQYYEHCLRVLGDIDDMERHLKGSSVIPRGRISINVAEEIAHTIVPP-IGDFLARYP 391

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +++ ++   + I     DCAI +   + +SSL  R + +      A+P YL+    P
Sbjct: 392 TMDLRIGIEGDPLGIIDKGVDCAIVVGN-LANSSLRSRTVGSCQAATVASPDYLRAHGVP 450

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H +I +  L P     +         I    +  + V+S  +++ Y V G G
Sbjct: 451 RSVLDLHHHTVIHYS-LKPFGSARYFRFNADGDDIQLKLVEKICVSSTQAMLNYAVDGVG 509

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +A L   I   +     LV I++        V   Y +       ++AF +++ L
Sbjct: 510 VAQLCRLIAARDLSAGRLVEILDQCRPDPLPVSVLYSDRRHMPMSVRAFIDWVVL 564


>gi|62181492|ref|YP_217909.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62129125|gb|AAX66828.1| regulator of gcv operon (LysR family) [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322715975|gb|EFZ07546.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 305

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G GI
Sbjct: 185 DLAKHTLLH--DAYRRDWQAYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|239818221|ref|YP_002947131.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804798|gb|ACS21865.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 324

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 126/290 (43%), Gaps = 5/290 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  +A   SFT AA++L +S S++S+ +  LE  +G++L  R  R + +TE G +L
Sbjct: 8   AIAAFARIAHHASFTRAAQELGVSPSALSQTVRTLEGRLGVRLLDRTTRRVGVTELGQQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        L      L E+  KP+G LR+       + LL  +  +F   YPDI ++L
Sbjct: 68  LKGAQPALAALAQAVEGLDEARDKPAGLLRLNVARVSAELLLNPHFADFAEAYPDITLEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + DN+ I++     D  IRL + +    +         M   A+P YL   R P + ++L
Sbjct: 128 VCDNRMIELVEGGFDAGIRLGESLAQDVVALPVGGPQRMVTLASPRYLAGRRPPKTPEDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  + +              A   R +       L  N    ++     G+GI +  +
Sbjct: 188 REHQCLNYRLTTGSLYRWE--YAQDGRVLDVEVAGPLISNDGDVLLAAARDGAGIMVAFE 245

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V+   ++  LV ++E         Y  +P   +   KL+ F +F+  +
Sbjct: 246 GMVRGDLESGRLVPLLEPWWPTFPGFYLYHPSRAQMPRKLRVFIDFLQAR 295


>gi|221065696|ref|ZP_03541801.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710719|gb|EED66087.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 303

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 130/285 (45%), Gaps = 6/285 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ ++ +F  V   GS + AA QL ++ S++S+ I  LE E G+ L +R  R LTLT+ G
Sbjct: 3   DFRRMAIFAAVVERGSMSAAARQLDMTPSAVSQHIRQLEQEAGLTLLHRSTRQLTLTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +   + +       + EL     +PSG+LR+A      Q+     L ++L ++P+++
Sbjct: 63  QRFYIQCAAMCEAASRARAELAAEHQRPSGELRLAAPAGFTQHA-APALGKWLAMHPELR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-EPLS 182
           ++L++D+  ID+     D A+R    +Q SS + R L        A+PH++K     P  
Sbjct: 122 LRLLMDDAPIDLIQARVDLALRFGN-LQDSSWVARHLGRSATVLCASPHWIKAHGSTPRH 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +   +          +        ++         +  N   ++ Q+C  G G+A
Sbjct: 181 PGELAQLPWLEMSRSDDAQADFLWRQQGTNQEFRLQVRPLMVSNHRSAVQQFCEAGLGLA 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           LL  + V    ++ +LVR++ D       ++           K++
Sbjct: 241 LLSAHDVAASLESGSLVRLLPDWNMGMLDIWAVTASRDTLPAKVR 285


>gi|78062062|ref|YP_371970.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969947|gb|ABB11326.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 297

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 122/291 (41%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F +VA  GSFT AA +L +SQS++S+ I  LET +G++LF R  R ++LT  G
Sbjct: 5   NLKDLTAFLLVAEEGSFTRAAARLGISQSALSQVIRALETRLGLQLFARTTRSVSLTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+L  +      ++++   E+     KP+G +R+       Q++LQ  +   L  YPDI+
Sbjct: 65  SRLLELIGPAMGEIDSGLDEITHLRDKPAGTIRLNADEYAVQHVLQPAVTRLLPAYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D    DI     D  +R    +    +  +      M    AP Y  +   P   
Sbjct: 125 VELNIDYGLTDIVSGRYDAGVRRGGLVAKDMIAVQISPPHPMSVVGAPAYFASRPAPKLP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I     +P   E F W  A   +         L  NS  S     + G G+A
Sbjct: 185 RDLTDHLCINL--RLPTHGEYFPWVFAKAGKEQRVKVDGQLVGNSIGSARDAALSGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP   V +   +  LV  +          Y  YP     +       + +
Sbjct: 243 HLPHAYVAEQLASGQLVEALSGWRKTYEPYYLYYPSRRHASPAFSLVVDAL 293


>gi|307300295|ref|ZP_07580075.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307319578|ref|ZP_07599004.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306894700|gb|EFN25460.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306904461|gb|EFN35045.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 310

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 129/292 (44%), Gaps = 6/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               +++R F  VA  GS +  A +L + QS+++R +  LE  VG+ L  R  R + +T+
Sbjct: 5   DITLERMRTFARVAERGSLSAVARELGVGQSTVTRHLRELEEAVGVPLLSRTTRRVMMTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS+ +  + E+   +E    E++ +    +G +R++ T   G   +   +  F  L+P+
Sbjct: 65  EGSRYYARSVEILRLVEQASDEVRGTRGAQAGTIRVSCTAAFGVLHVSRLIFAFQDLFPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L L ++ +D+  +  D AIRL  P+  SS+  + L        AAP YL     P 
Sbjct: 125 IGIDLSLSDERVDLVREGIDVAIRLG-PVSDSSMRMKALGQSRRLLVAAPAYLAERGRPA 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + QEL  H  I   ++     E         +    P    L+V+  L++ +  + G GI
Sbjct: 184 TPQELIGHEGIRMSNVSGS--ETLALQGRDGKYHAVPFGGRLRVDHGLAVREALIAGRGI 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                ++V D      +  ++     PS  +            +++   +F+
Sbjct: 242 VPAHRWLVGDLLEAGRIEAVLPGYSLPSVPLNMLIVPERAGISRVRLLIDFL 293


>gi|300313065|ref|YP_003777157.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075850|gb|ADJ65249.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 301

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 7/297 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   A +GS + AA Q  ++ +  S  +  LE E+G +L  R  R L LT  G 
Sbjct: 4   LEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTPDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +    V  ++   +  +        G L ++   D G+NL+   L EF   +P + +
Sbjct: 64  RYLQHARNVLAEVNAGRDAVAHGRRVIGGNLSLSAPSDFGRNLIGQWLDEFQAQHPAVSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           Q+ + ++  D+     D AIR   P   SSL+   L         A+P YL     P S 
Sbjct: 124 QVHVSDRVADMYRQPVDVAIRYSAP-DDSSLVALPLAPDNRRVLCASPDYLARHGRPRSP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN + +  ++   +         D P+          +    + ++ V G GIA 
Sbjct: 183 ADLRQHNCLRY--VLSDTLHSQWNFFKDDEPVQVQVSGDRTCDDGELVRRWAVNGRGIAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                V  +     L  ++ED       ++      +  +  ++A R  +  +   +
Sbjct: 241 KSRLDVLADLRNGRLEALLEDYEGEPSPLHLVCTHRMCVSPTVRALRELLGERIARY 297


>gi|261252200|ref|ZP_05944773.1| LysR-family transcriptional regulator [Vibrio orientalis CIP
           102891]
 gi|260935591|gb|EEX91580.1| LysR-family transcriptional regulator [Vibrio orientalis CIP
           102891]
          Length = 298

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 125/287 (43%), Gaps = 11/287 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V   VA++ SFT  A++L +S+  ++R +   E  +G +L  R  R ++LT  G +L  
Sbjct: 8   KVMLDVAQTESFTATADRLDMSRPMVTRYVEAAENWLGSRLLQRTTRKVSLTSAGEQLLP 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                  +    +  L  +    SG +R++ ++  G + L   L++F   YP +++ +  
Sbjct: 68  KLQSWVDEAHKLEESLMPTHA-ISGLVRVSVSMSFGFSQLMPALEKFRQQYPAVKLDIDA 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  +  D AIR      + +LI R     +    A+P YL    E  + Q+L  
Sbjct: 127 QDRAVDMVAERIDLAIRTTND-PNPTLIGRPFSVCYSKLVASPEYLATQPEIKTPQDLTH 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDY 247
           H  + +     K      W  T      E  ++C +  N    ++   +   GI++ PDY
Sbjct: 186 HQCLGY-----KNFGRHLWQLTHKGERQEVEVNCDITANEATVLLHGSLANMGISMQPDY 240

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +     +   LV ++ +    S  +Y  YP     +  ++   +F+ 
Sbjct: 241 LADQWIEQGKLVWVLPEWQLMSLQMYLLYPSRKHLSIPVRVLIDFLL 287


>gi|193076608|gb|ABO11281.2| Transcriptional regulator [Acinetobacter baumannii ATCC 17978]
          Length = 326

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G
Sbjct: 6   NLSDLKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +Q
Sbjct: 66  KLILERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHIAPILSKLMMLYPKLQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I     +   D+     D  IR+   I + ++I +KL +      A+P YL     P SI
Sbjct: 126 IHFDTIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCASPSYLLKHGVPDSI 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ +T  +     +      A+ D  +          N+   I Q  + G GI  
Sbjct: 185 EDLQTHDCLTISERDQSSVLWKFRHASEDVSVHIK--PRFVSNNGEIIHQLAIEGHGIIF 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D      L  I+ +    +  V+  YP  LK++ KL+    FI
Sbjct: 243 RSIWDVADELITGQLQHILPEYWQDA-DVWAVYPSRLKSSSKLQTCILFI 291


>gi|169796967|ref|YP_001714760.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|301347681|ref|ZP_07228422.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB056]
 gi|301510514|ref|ZP_07235751.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB058]
 gi|301596310|ref|ZP_07241318.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB059]
 gi|332853057|ref|ZP_08434533.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332868358|ref|ZP_08438114.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149894|emb|CAM87787.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|332728872|gb|EGJ60229.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332733442|gb|EGJ64622.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 326

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G
Sbjct: 6   NLSDLKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +Q
Sbjct: 66  KLILERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHVAPILSKLMMLYPKLQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I     +   D+     D  IR+   I + ++I +KL +      A+P YL     P SI
Sbjct: 126 IHFDTIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCASPSYLLKHGVPDSI 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ +T  +     +      A+ D  +          N+   I Q  + G GI  
Sbjct: 185 EDLQTHDCLTISERDQSSVLWKFRHASEDVSVHIK--PRFVSNNGEIIHQLAIEGHGIIF 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D      L  I+ +    +  V+  YP  LK++ KL+    FI
Sbjct: 243 RSIWDVADELITGQLQHILPEYWQDA-DVWAVYPSRLKSSSKLQTCILFI 291


>gi|148260287|ref|YP_001234414.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146401968|gb|ABQ30495.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
          Length = 315

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 128/290 (44%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  VA + SFT AA +L +S+ ++S+ IS LE  +G  L  R +R L+LTE G
Sbjct: 6   DLEAWALFAKVAETRSFTRAASELGISKPTVSKAISRLEARIGTALLNRTSRRLSLTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R    +  + E  + E  + +  PSG +R+   +  G   +   L E    YP++ 
Sbjct: 66  RRAARSAGRILTEGEALETEAMDQATAPSGLVRLTAPMSFGIAHVAPLLPELFETYPELS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +D+     D AIR+   +  S+L  R++  +      AP Y +    P   
Sbjct: 126 VDLHLADEVVDLVGGGFDIAIRIAA-LPDSALRTRRVCRVRRLLVGAPEYFERQGRPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  + +  L       F         +       L+VN+  ++    V G G+A+
Sbjct: 185 GDLARHVCLGYAYLPSSSRWHFR--HATGEEVDVVPGGPLRVNNADALRPMLVAGRGLAV 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+++  ++     L   M D   P   +    P +     ++ A  +F+
Sbjct: 243 QPEFMAAEDIAAGRLEVAMADWSMPPIALNIVTPPSGLRPARVTAVIDFL 292


>gi|329297747|ref|ZP_08255083.1| LysR family transcriptional regulator [Plautia stali symbiont]
          Length = 307

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 130/298 (43%), Gaps = 7/298 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+A  GSFT AAE+L +S++++S++I  LE   G+ L +R  R + LT  G 
Sbjct: 10  WVHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKELEQMAGVALVHRTTRSVRLTSAGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL     E + ++  +   +++ +      +RI+  +   +  L   + +FL  YP +++
Sbjct: 70  KLVDDLREPFARIAQSFFSVRDEAGPVRSLVRISAPVAFARQQLVPIIGDFLRDYPQVRL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L ++ + +  +  D AIR  + +  +  +   L        A+P YL     P + Q
Sbjct: 130 QLNLSDRLVSLGSEGFDLAIRHSQQLPETH-VALPLCETRTLLVASPDYLTRHGMPHTPQ 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +HN + +   +      F   +     +          N+  SI    + G GIA+L
Sbjct: 189 ALQQHNCLYYPRALESPQWRFRLHSDDSETVQVKIQGNFATNNSESIRDAVLQGLGIAML 248

Query: 245 PDY---IVKDNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           PD+       +  L +++ +          ++   P A +    +  F +++  +  D
Sbjct: 249 PDFSTGAALASGMLQQVLPEWQAVDAFADRLWVVRPYAAQVPRAVTTFIHWLRTRFVD 306


>gi|254250786|ref|ZP_04944105.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124879920|gb|EAY67276.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 320

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 123/297 (41%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V  +  F  AA +L++S S ISR ++ LE  +G++L  R  R + +T+
Sbjct: 20  MDRLQAMTTFVTVVETEGFASAARKLNVSPSVISRVMTELEEYLGVRLLTRTTRVVRITD 79

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   ++  ++    +S  P G+L +   +  G++ +     E+L  +P 
Sbjct: 80  AGASFYEDCRRILADIDAAELSATGTSNTPRGQLTVTAPVLFGKSYVTPIALEYLEHHPF 139

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +     ++ +++  + AD A+R+ + + +SSL    +  +     A+P YL+    P 
Sbjct: 140 VNLNCWFLDRVVNLVDEGADVAVRIGE-LPNSSLQAIPVGKVRRVLCASPAYLRAHGTPR 198

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  I    + P     F      D+ +  P    L   +  S +     G GI
Sbjct: 199 HPDDLAAHVTIQATGITPAPEWRFR---ARDKTLTVPIQPRLLTTTNDSAIAAATAGLGI 255

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             L  Y V D      L  ++ +       V+  + E      K +AF +    + R
Sbjct: 256 VRLLSYQVVDELAQGTLCVLLAEHELAPLPVHVVHREGRHANRKARAFIDLCVERLR 312


>gi|27383015|ref|NP_774544.1| DNA-binding transcriptional activator GcvA [Bradyrhizobium
           japonicum USDA 110]
 gi|27356188|dbj|BAC53169.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 299

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 117/296 (39%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LR F   AR  SFT AA +L+++Q++IS QI  LE E+GI+LF R  R L LT + 
Sbjct: 7   SLNGLRAFEAAARHLSFTLAASELNVTQTAISHQIRRLEEELGIRLFIRQNRALALTPEA 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                     ++ L      L          L ++T   L    L   L +F   +P I 
Sbjct: 67  RDYLPGVRAAFNDLRLATDRLLRRDDDK--VLTLSTLASLAAKWLLPRLTDFQEQHPGID 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++      +D   D  D AIR  +  Q   L    L+   +    +P  L+  +     
Sbjct: 125 VRITTSTSLVDFQRDDVDAAIRYGRG-QWPGLRADWLMADELFPVCSPSLLRGDKPLQRP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H L+   +          WL     P    +   +  +     +Q  + G G+A+
Sbjct: 184 EDLRNHPLLHTSNANSDDWRL--WLTAAGLPADIAKQPGITFDMIFMTIQAAIDGIGVAM 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V+D+     LV   +  +      Y   PE  +   KL AFR +I    ++
Sbjct: 242 GRTSYVQDDIAKGRLVVPFKIALPADAGFYLVAPEGRREAPKLAAFRQWIVAATQN 297


>gi|330820525|ref|YP_004349387.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327372520|gb|AEA63875.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 318

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 120/293 (40%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIAATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +    +  +  +++    E + + +KPSG++RI     LGQ+ +   +  +    P
Sbjct: 60  ESGQRYFERSKSILAEIDHANAEARNALLKPSGRMRIHAMTGLGQSHVVPAVVRYQDDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L L  +  ++  +  D +I     +  S  + +          A+  YL     P
Sbjct: 120 EVSVDLTLAQRMPNLVEEGYDVSIVTAAQLPDSGYVAQTCGESCSVLVASRDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L KH  +          E        +    +   S  QVN   ++      G G
Sbjct: 180 KTPDDLRKHVCLRLDTPSSPGGEWRLERNDGEEQHFDLPPSPFQVNVPDALAVALRSGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +  Y   D+     LVR++ +    +  VY  Y        K + F + +
Sbjct: 240 IGSIALYTAIDDLRSGRLVRVLPNYRLHTIHVYAVYASRRYLDAKTRTFLDHL 292


>gi|317493102|ref|ZP_07951526.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919224|gb|EFV40559.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 298

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L +F  V R GSFT AA++L L+QS ISR I  LE  +G++L  R  R L++T+ G
Sbjct: 6   NYNELYLFMQVVREGSFTAAAQRLGLAQSGISRSIRELEERLGVQLLVRTTRKLSVTQAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+R     +  L+     L      PSG +RI  +      +L   L  F   YPDI+
Sbjct: 66  EQLYRTVESGFDALDMGLATLAHYRQTPSGTVRINASQHAIDKVLLPKLAMFKQRYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++LI +++ +DI  +  D  +RL   +    +  R    + M     P + +    P + 
Sbjct: 126 LELISESRFVDIIEERFDAGVRLGSDVGHGMVAVRISPDMEMVVVGTPEHFRRYGFPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I +       +  +       +    P+      +SY+       LG G+A 
Sbjct: 186 ADLVVHPCIAY-QFGDGSLYAWELNDDGKKITHRPQGQWAFADSYMEAK-AARLGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P+ +V D+    +L+R+++         +  YP     +  L+    
Sbjct: 244 VPEELVADDLVQGSLIRVLQRYSQRLDGSFLYYPH-RNVSPALRIVIE 290


>gi|307728695|ref|YP_003905919.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583230|gb|ADN56628.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 318

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 129/286 (45%), Gaps = 4/286 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT  A  L  +  +ISR +S LE  +  +L  R  R L +T+ G + +
Sbjct: 7   MSVFAKVVEMGSFTSVANHLDTTVGNISRAVSVLEESLDTRLMQRSTRRLVITDAGRRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   +E  + E +++ ++P G+LR+ +   LG+NL+   +  +   YP++ + L+
Sbjct: 67  DRCVAILTDVELAEAEARDALLEPRGRLRVHSVPGLGRNLVTRAVMAYRSSYPEVSVDLL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  ++  +  D  I + + +  S+ + + + + H    A+P YL     P   ++L 
Sbjct: 127 LSQRMPNLLEEQLDIGIVITRTLPDSAYVSQNIGSSHCILAASPEYLAAHPAPTCPEDLI 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +  G  +    ++++  +     I  P      VN   S+ Q    G+GI LL  +
Sbjct: 187 DHQCVLLG-TVDYAPDEWHLESAAGGAIFRPAGPHFSVNDMDSMSQALRDGAGIGLLAAF 245

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              D+     LVR++    T    VY  YP       K+K F   +
Sbjct: 246 SAIDDLRSGALVRVLPGYHTQVRNVYAVYPSRQFVDAKIKRFVEML 291


>gi|113971730|ref|YP_735523.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113886414|gb|ABI40466.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 330

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  
Sbjct: 1   MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  ++ +  +  +L+ T  E+     + SG LRI        N+L   +  F+ L+P +
Sbjct: 61  GSHFYQRSLNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMNVLMRAIFRFMDLHPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I   + +D+  +  D A  +   + +  L+ R + T  +  YA+P YL     P +
Sbjct: 121 TVEVINSAEAVDMVKNNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPDYLAKHGTPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QE++ HN+  F     K   +      +              NS    +++ + G GI 
Sbjct: 181 SQEIESHNVSLFRLSNGKIFNEL----WIGEEQAVRVRGNFCSNSVQVAVEFALQGRGIV 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P  +V +      LV ++ ++       Y  YP     +   + F +FI  + 
Sbjct: 237 YAPTEVVSEYVTAGQLVTLLPEIEPHPGECYLAYPSRRYVSLASRRFIDFIIQEL 291


>gi|330806949|ref|YP_004351411.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375057|gb|AEA66407.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 296

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 136/297 (45%), Gaps = 12/297 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             ++VF  +    SFT AAE L++ +++++  ++  E  +G++L  R  R +  T  G  
Sbjct: 5   KAMKVFVRIYERSSFTLAAEDLNMPRATLTHTLNQFEAWLGVRLLERSTRKVRPTLDGEA 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++  +LE  ++  +   V P GKLR+       +  +   L +F+  YP+I++ 
Sbjct: 65  YYPRCVQLLAELEEAELAFRG--VAPKGKLRVDLHGTQARYFVIPALPQFMARYPEIELF 122

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +D+  +  DC +R  + +  SSLI R++  +     A+P YL+   EP  + +
Sbjct: 123 ISEADRFVDLIAEGVDCVLRSGE-LADSSLIGRRVANLRQITCASPGYLRQYGEPKCLDD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  H  + +       +  F ++  VD  + E  I   L V+         + G G+   
Sbjct: 182 LKHHKAVNYVSRTTAKLYPFEFM--VDGELKEVPIGGSLSVSGAEIYAASAIAGLGLIQC 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKAR 295
           P Y +++      +  ++     PS  V   YP     + +++ F ++   +F +AR
Sbjct: 240 PHYRMEEPIRQGLMQEVLTATPPPSMPVSVLYPHNRLMSPRVRVFVDWVAEVFAQAR 296


>gi|238793047|ref|ZP_04636676.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238727647|gb|EEQ19172.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 307

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 132/299 (44%), Gaps = 12/299 (4%)

Query: 1   MSFDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS   D    L  F   A+S +F+ AA QL ++ +++S+ I  LE ++ ++LF R+   +
Sbjct: 1   MSLPLDIHRLLPAFLTAAQSENFSTAARQLGITPAAVSKNIRVLEEKLALRLFQRNTHSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESS-VKPSGKLRIATTIDLGQNLLQGNLKEFL 116
            LT++G  L    + ++  L  T   ++ +   +PSG +R++     G+ LL   + +F+
Sbjct: 61  VLTDEGKTLLARVAPLWQALSNTLDTVRNNDEQQPSGTVRVSVIPGFGRQLLMPLIPKFM 120

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP I + L L+ + +++  +  D  I  R     S LI R+   + M   A+P YL  
Sbjct: 121 ARYPQIDLDLSLEARVVNLVGEGFDVGIGTRID-PDSRLIARQFYPMQMLLAASPAYLAR 179

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYC 235
              P S Q+L +H  +   +  P       W    +  +    +S  L  +    ++   
Sbjct: 180 NGSPTSPQDLYQHQCLIHRN--PSNGRRVKWQLQQNNEVQSLELSGRLISSQPDMLLHAA 237

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +   GI  +  +       + +L+ ++         V+  Y  A     +++ + +F+ 
Sbjct: 238 LADMGITYVAQWHAASHFADGSLMPVLASYWPAPTPVWLYYASAD-LPPRVRVWVDFLL 295


>gi|167036290|ref|YP_001671521.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862778|gb|ABZ01186.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 303

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 128/294 (43%), Gaps = 4/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L +R +R  +LTE G
Sbjct: 3   DLNSLYYFTQVVEHGGFAPAGRALDMPKSKLSRRIADLEDRLGVRLLHRTSRHCSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E     ++ +  +P G +RI+    L  + +   L  ++L YP ++
Sbjct: 63  QAYYNRCLAMRVEAEGAAEIIERNRSEPRGLVRISCPTTLLNSWVGPMLTRYMLKYPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D A+R+R  P++++ ++ + L          P YL+   +   
Sbjct: 123 LFIESTNRRVDLLHEGFDIALRVRFPPLENTDMVMKVLSNSTQCLVGQPQYLEQLPKGFD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q L     + +G    +   +        R I  P    +  +   ++  + V G GIA
Sbjct: 183 PQLLGTLPSVHWGSAQREYQWELFQGEGNSRSIVIPHKPRMVTDDLFALRHFVVAGVGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP   V+++     LV ++ +       V+  +P        ++A  + +  +
Sbjct: 243 HLPRVAVREDLAAGRLVELLPEWHPRCGIVHAIFPSRRGLLPSVRALIDHLAEE 296


>gi|116695872|ref|YP_841448.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530371|emb|CAJ96718.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 309

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 130/291 (44%), Gaps = 7/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA + SF  AA QL ++ S +S ++  LE  +   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVADTLSFAEAARQLGVTNSVVSHRVQQLEKYINAPLFHRSTRHVRLSEVGETYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  ++V   L     ++++    P+G+LRI              L  F   YPDI++ ++
Sbjct: 67  RQCADVVANLADLTDQMRDLRATPAGRLRIQVLPGFAIGHFADILAGFSQQYPDIELDVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++ ID   +  D A ++  P Q+ SLI R+L T+      AP +++   +P    +L 
Sbjct: 127 VNDRVIDPIEEGFDVAFQIFAP-QNDSLIARRLFTLRRIFCVAPEFIERWGKPERPADLI 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              +  +     +    F+  A        PR   ++ NS   +  Y V G+ +  LP  
Sbjct: 186 CSKVALYSAYPTRNKWTFSRDAESVEIDLAPR---MRTNSVHLLRDYAVSGAAVVCLPTL 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  ++     LV ++ D    SF     YP   +   K++   +++  + +
Sbjct: 243 VASEDLLAGRLVPVLHDYALSSFEFAAVYPATQRQALKVRVLVDYLAERLQ 293


>gi|52426198|ref|YP_089335.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308250|gb|AAU38750.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 321

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 137/297 (46%), Gaps = 7/297 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L  F   AR GSF+ AAE L L+ +++S+ ++ LE  + ++LF R  R L+LTE+G 
Sbjct: 10  FNHLISFTHAARFGSFSAAAEALDLTPAAVSKNVALLEQALNVRLFNRTTRSLSLTEEGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +  + +    LE    ++    S + +G +RI+    +G+NL+   LK F   YP I 
Sbjct: 70  VFYAESKKALALLEEAVNQITLAESQEIAGNVRISMPNVVGRNLVFPLLKSFNEDYPKIH 129

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  DNK ID      D  +R+ +  + S L+ R +  I     A+P YLK+   P ++
Sbjct: 130 LELDFDNKAIDFVKAGFDFVLRVGESSEGS-LVARHIGMIQTCLVASPAYLKSQGVPKNM 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H L+    L    ++ + +    D          L +       Q  V G GI  
Sbjct: 189 ADLPQHQLLM-TRLPNGKLQPWTFNEQGDNVHFLHAQPHLVLTDAEMQTQAAVQGFGITQ 247

Query: 244 LPDYIV---KDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LP Y+      N  LV I+ D       ++   +P       +++   +++  + + 
Sbjct: 248 LPVYLALPYLQNGELVTILNDSYQPLKLSLNILFPHRTLLAQRVRTTMDYLLEQLKQ 304


>gi|325919076|ref|ZP_08181136.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325550460|gb|EGD21254.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 297

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 122/288 (42%), Gaps = 5/288 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ L  F  VA   SF  AA +L L+ SS+S  IS LE  +G++L +R  R ++LTE G
Sbjct: 5   TFNDLAAFTSVAVHRSFRRAATELGLAPSSLSHLISALERNLGVRLLHRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+         +E    EL      P+G +RI     + + LLQ  + E L  YP + 
Sbjct: 65  ERLYAKLVPALQDVEQALSELDAFRSGPTGTVRINAPEVVVRLLLQQVVPEVLARYPALS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+ + + +DI     D  IRL + +    +           A AAP YL+    P + 
Sbjct: 125 VDLVSEGRLVDIVAAGFDAGIRLSESVPQDMIAVPFGGQTRFIAVAAPAYLQRAGSPDTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  I       +            + +       L ++  L + +    G GIA 
Sbjct: 185 EDLHRHACIRHRMPSGRLYRWE--FERRGQEVVIDVPGRLTLDQILMMSEAAEAGLGIAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P++          LVR++E        +   YP   +    L+AF +
Sbjct: 243 VPEHAAMPALARGTLVRVLEQWCPAIPGLVLYYPGHRQIPPGLRAFID 290


>gi|237800979|ref|ZP_04589440.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806485|ref|ZP_04593189.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023835|gb|EGI03892.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027598|gb|EGI07653.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 294

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +ET  G +L +R  R L LT  G     
Sbjct: 8   RVFIAINERGSLIAAAEALDMSRAMVTRYLAQMETWAGARLLHRTTRKLGLTAPGQVTLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G LRIA +  L Q +L   +  +L  Y    +  ++
Sbjct: 68  RCQQLVEMADAVPLAADTQVDEPRGMLRIACSQSLAQAVLATAVTAYLQRYSGTSVDFLI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   ++I R L   +    A+P YL     P   QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQL-DPNVIARPLGQCYSIVCASPAYLALRGTPSRPQELAA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E          P+  P    L  N  + +++  V G+GI L P + 
Sbjct: 187 HNCLTYSYFGKSLWE----FTHGKSPLSVPVGGNLSANDSVVLLEAAVAGAGITLQPVHS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +  LV +M      +  ++  Y      +  L+   +F+  
Sbjct: 243 AAPLIASGKLVALMPGYQPRALGIHAIYTSRHHQSATLRTMLDFLAE 289


>gi|217978084|ref|YP_002362231.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
 gi|217503460|gb|ACK50869.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 302

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+++LR F  V    SF+ AAE L +S S++S+ +   E  VG +L  R  R + LT+ G
Sbjct: 9   DYNQLRAFVAVGEFLSFSRAAEALGVSPSALSQTVRAFEERVGARLLNRTTRSVALTDAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L         +L    ++ + S  +P+G +R+ +    G+  L+  L  F   +P++ 
Sbjct: 69  EILLGRVRPAVTELGDALVQTRCSGERPTGLVRVHSFRLAGERYLEPILGRFARDFPEVV 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + LD+   D+     D AIR+ + I+   +  +    +   A A+P YL+   +P   
Sbjct: 129 LDVTLDDAVEDVVAGRYDIAIRIGEVIERDMIAVQLGPALRQIAVASPAYLERHGKPEHP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L +H  + +    P     + W    +    E  +   L VN     +   +  +GIA
Sbjct: 189 RDLLQHRCVRW--RWPGRATPYAWEFFENGAWFEVAVDGPLIVNDKNLAVSAALQAAGIA 246

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
              + +V++   +  LV ++E         + CY    +    ++A  +
Sbjct: 247 FAVEDVVREQIGSGALVSLLEPWCADFPGYFLCYSSQRQMAPAVRALID 295


>gi|149918293|ref|ZP_01906784.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149820819|gb|EDM80228.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 304

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 131/295 (44%), Gaps = 15/295 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  +  +    +F+  AE+L +SQS++S+ ++ LE E+G++L  R  R   +TE G + 
Sbjct: 6   AMHAYVRLVELDTFSAVAEELRVSQSTVSKWLAALEDELGVQLMERTTRSRRVTEAGERF 65

Query: 67  HRVTSEVYHKLETTQIE--------LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           ++   ++         E           +     G++R++  +  G+  +   + +F+  
Sbjct: 66  YQRARDILAAYADASAELAPARSGRRARAREPLRGRIRVSVPVVYGRLFILPKVAKFMRR 125

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P ++++L+ +++ +++  D  D A+R+  P+   S   RKL     H  A+P YL+   
Sbjct: 126 HPAVEVELVFNDRYVNLVEDNFDVAVRVGIPV-DVSFKARKLGESRRHLVASPGYLERGP 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                + L +H  +   +L    + D   L    +    P       N+  +++     G
Sbjct: 185 ALTRPEHLREHCCLVHTNL---RVGDTWALRRGPKTWRAPVRGRFAANNSEALLTLARRG 241

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+ALL D++V+ +     L  ++ D   P   V            +++AF +F+
Sbjct: 242 IGVALLADWLVEADLRAGRLRTVLPDYELPPAPVQALTAPGRHPHPRVRAFLDFL 296


>gi|71736168|ref|YP_274750.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556721|gb|AAZ35932.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320324536|gb|EFW80613.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328909|gb|EFW84908.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 303

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 137/301 (45%), Gaps = 12/301 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M++ + D L VF  VAR  SF  AA +L +S + +S+++  LE  + + L +R  R +++
Sbjct: 1   MNYPNLDDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMSVVLLHRSTRQVSI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +++     +   ++    E+     +PSG LR+ ++   G+  +   L E   LY
Sbjct: 61  TEDGERVYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I+L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YLK+   
Sbjct: 121 PKLDIRLDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PLSI EL  H+ +   +           L              L  N      Q+C+ G 
Sbjct: 180 PLSIGELANHDCLVIKERDRPFGIWH--LNGPQGAETVKVTGSLSTNHGEIARQWCLDGR 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L   + V+       LV+++ +    +  ++  +   L ++ K++    F+    RD
Sbjct: 238 GVLLRSLWDVRTDLAEGRLVQMLPEYRQDA-DIWAVHTSPLMSSAKVRVTVEFL----RD 292

Query: 297 W 297
           +
Sbjct: 293 Y 293


>gi|326404618|ref|YP_004284700.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325051480|dbj|BAJ81818.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 304

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 126/297 (42%), Gaps = 12/297 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D    L +F  +   GSFT AA    +S+ + +  I+ LE  +G +L  R  R +  
Sbjct: 1   MTMDRLAALELFVRIVDRGSFTAAAADCSISRPAATATINALEKRLGTRLLQRSTRHVQP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G   +R    +   LE      + +S   +G LR+     L + +L   L  FL L+
Sbjct: 61  TVEGEAYYRRCIGILADLEDA---DRGASGAVAGLLRVDMVGTLARIVL-PALPTFLALH 116

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +    + +D+  +  DC +R    +  S +I R L  +     A+P YL     
Sbjct: 117 PAVTVHIGEGERFVDLVREGVDCVVRAG-TLPDSDMIVRHLGVLEEIICASPAYLSEHGV 175

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P +  +LD H ++ F  +  +  +       VD    E  + + + VN   +      LG
Sbjct: 176 PATPDQLDGHFMVGF--VSSRTGQPLPLEFMVDGVKVERTLPARVMVNGADTSAAAARLG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G+   P    KD+     LV I++D       +   YP   + + +++ F +++  
Sbjct: 234 MGLVQAPRLRFKDDLNTGALVEILQDFQPSPTPISVIYPNHRQLSPRVRVFVDWLVE 290


>gi|330891141|gb|EGH23802.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 303

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 137/301 (45%), Gaps = 12/301 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M++ + D L VF  VAR  SF  AA +L +S + +S+++  LE  + + L +R  R +++
Sbjct: 1   MNYPNLDDLNVFIHVARRSSFVGAANELGMSAAYVSKRVKLLEQNMSVVLLHRSTRQVSI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +++     +   ++    E+     +PSG LR+ ++   G+  +   L E   LY
Sbjct: 61  TEDGERVYEWAKGILESVQQMGDEVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I+L + ++ +D+  +  D  IR+   I +  L  R L +      A+P YLK+   
Sbjct: 121 PKLDIRLDIQDRLVDLIEEGVDLDIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PLSI EL  H+ +   +           L              L  N      Q+C+ G 
Sbjct: 180 PLSIGELANHDCLVIKERDRPFGIWH--LNGPQGAETVKVTGSLSTNHGEIARQWCLDGR 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+ L   + V+       LV+++ +    +  ++  +   L ++ K++    F+    RD
Sbjct: 238 GVLLRSLWDVRTDLAEGRLVQMLPEYRQDA-DIWAVHTSPLMSSAKVRVTVEFL----RD 292

Query: 297 W 297
           +
Sbjct: 293 Y 293


>gi|270260973|ref|ZP_06189246.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044457|gb|EFA17548.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 304

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 132/291 (45%), Gaps = 5/291 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F    ++G F+ AAEQL LS+S++ + ++ LE  + ++LF R  R L+LT++G 
Sbjct: 7   LHAIRAFVQAVQAGGFSRAAEQLGLSRSTVGKAVARLEQRLQVRLFQRTTRSLSLTDEGQ 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +    LE  + +L   +  P G+LR++  +  GQ  +   L      YP + +
Sbjct: 67  LFYDDCLKALAALEAAESQLAARARTPEGRLRVSLPVLFGQKWVLPPLLALTDRYPQLHL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +  N+  D++ +  D A+R+  P  ++++  R+L        AAP YL    EP ++ 
Sbjct: 127 EALFSNRASDLAEEGIDLAVRIGSPGDAAAITARQLGEQKQILCAAPIYLARQGEPGAVA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H  I    L     + +  L    +       + L++ +  +++     G GIA+L
Sbjct: 187 ELLQHQAIAM--LRDGHSQPWELLDPQGKTQRLQPPARLRLGNMEAVLSAACAGHGIAML 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P ++  D      L  I+     P   +   + +      +++   + +  
Sbjct: 245 PRWLAHDALTAGTLREILPGSCGPGLAINVVWLKGTAMPLRVRVAIDALLA 295


>gi|91779417|ref|YP_554625.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692077|gb|ABE35275.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 324

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 9/300 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D +  +R F   A  GS T AA++L +  S+ SR ++ LE ++ I LF R  RGL+LT
Sbjct: 18  DMDYFAAVRTFVRAAELGSLTRAAQELSIKTSTASRHLNELEADLRIALFNRSTRGLSLT 77

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +   SEV  +L+  +      +  PSG LR+   +  G+  +  ++ EF+  Y 
Sbjct: 78  EGGKVFYARVSEVLTQLKDARDATSSLNQSPSGVLRVTLPVSFGRKHVVPHIGEFMDRYR 137

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++ I  +  +++     D  IR+   +Q SSL+ R+L      A AAP Y + C  P
Sbjct: 138 DIDVEAIFTDDVLNLIESQIDLGIRIGA-LQDSSLMARRLAPHREVACAAPAYARACGVP 196

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++   L  H  + F   +           T            L ++   +++   + G G
Sbjct: 197 VTPGALKDHACLMFSRTVGNVWYVRPREDTAAEWQKATVNGRLTLDDTDALLAVALAGRG 256

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPS----FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IALLP ++  +   +  L  I+      S     +++  YP     + K+++F +F+  K
Sbjct: 257 IALLPGWLAHEPLSDGRLTSILPGWEIRSSREEASIWAVYPRKKTVSSKVRSFIDFLADK 316


>gi|16761760|ref|NP_457377.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16766286|ref|NP_461901.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29143244|ref|NP_806586.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56414931|ref|YP_152006.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161506474|ref|YP_001573586.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161615917|ref|YP_001589882.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167550145|ref|ZP_02343902.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993480|ref|ZP_02574574.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168231077|ref|ZP_02656135.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236034|ref|ZP_02661092.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168242750|ref|ZP_02667682.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261867|ref|ZP_02683840.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463862|ref|ZP_02697779.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820292|ref|ZP_02832292.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194444978|ref|YP_002042234.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451240|ref|YP_002046954.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194470143|ref|ZP_03076127.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194737180|ref|YP_002115935.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197251092|ref|YP_002147894.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197263267|ref|ZP_03163341.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197363859|ref|YP_002143496.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198245105|ref|YP_002216958.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|204928403|ref|ZP_03219603.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205353924|ref|YP_002227725.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858247|ref|YP_002244898.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213418326|ref|ZP_03351392.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213424888|ref|ZP_03357638.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213583190|ref|ZP_03365016.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213622672|ref|ZP_03375455.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213649825|ref|ZP_03379878.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|224584772|ref|YP_002638570.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238909761|ref|ZP_04653598.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289829844|ref|ZP_06547359.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25321782|pir||AH0863 regulatory protein for glycine cleavage pathway STY3122 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16421532|gb|AAL21860.1| regulator of gcv operon [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16504062|emb|CAD02808.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138877|gb|AAO70446.1| regulatory protein of glycine cleavage pathway [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56129188|gb|AAV78694.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|160867821|gb|ABX24444.1| hypothetical protein SARI_04680 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365281|gb|ABX69049.1| hypothetical protein SPAB_03711 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403641|gb|ACF63863.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194409544|gb|ACF69763.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194456507|gb|EDX45346.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194712682|gb|ACF91903.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195633577|gb|EDX51991.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197095336|emb|CAR60894.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214795|gb|ACH52192.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197241522|gb|EDY24142.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290647|gb|EDY30001.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197939621|gb|ACH76954.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|204322725|gb|EDZ07922.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205273705|emb|CAR38698.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205324797|gb|EDZ12636.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328462|gb|EDZ15226.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334595|gb|EDZ21359.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205338178|gb|EDZ24942.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205342981|gb|EDZ29745.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349161|gb|EDZ35792.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206710050|emb|CAR34405.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|224469299|gb|ACN47129.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|261248118|emb|CBG25953.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267995122|gb|ACY90007.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159542|emb|CBW19061.1| regulatory protein for glycine cleavage pathway [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914003|dbj|BAJ37977.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087407|emb|CBY97172.1| Glycine cleavage system transcriptional activator Gcv operon
           activator [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321225665|gb|EFX50719.1| Glycine cleavage system transcriptional activator GcvA [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322613384|gb|EFY10325.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322620976|gb|EFY17834.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624039|gb|EFY20873.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628221|gb|EFY25010.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633340|gb|EFY30082.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636082|gb|EFY32790.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639419|gb|EFY36107.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643718|gb|EFY40270.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648831|gb|EFY45278.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655176|gb|EFY51486.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657993|gb|EFY54261.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664095|gb|EFY60294.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667063|gb|EFY63235.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673112|gb|EFY69219.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677897|gb|EFY73960.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681072|gb|EFY77105.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685668|gb|EFY81662.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323131340|gb|ADX18770.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323194807|gb|EFZ79994.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196558|gb|EFZ81706.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323205028|gb|EFZ90011.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207770|gb|EFZ92716.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212677|gb|EFZ97494.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214839|gb|EFZ99587.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222569|gb|EGA06934.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226448|gb|EGA10656.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230672|gb|EGA14790.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234977|gb|EGA19063.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239015|gb|EGA23065.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244627|gb|EGA28633.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247242|gb|EGA31208.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251775|gb|EGA35640.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256418|gb|EGA40154.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262406|gb|EGA45962.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267498|gb|EGA50982.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269098|gb|EGA52553.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326624723|gb|EGE31068.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629038|gb|EGE35381.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989852|gb|AEF08835.1| DNA-binding transcriptional activator GcvA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 305

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G GI
Sbjct: 185 DLAKHTLLH--DASRRDWQAYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|253988083|ref|YP_003039439.1| DNA-binding transcriptional activator GcvA [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779533|emb|CAQ82694.1| lysr family regulator of gcv operon [Photorhabdus asymbiotica]
          Length = 306

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 125/293 (42%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S Q+  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQMKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++ +       L   L  F L YP I +
Sbjct: 68  SYYLDIKEIFTSINEATRKLQARSA--KGALTVSLSPSFAIQWLVPRLSGFNLAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +      L   +L   ++    +P  L       +  
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWPGLRTDRLYAEYLLPVCSPSLLTGENPLKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+          +   ++  +D             +    ++Q  V G G+AL 
Sbjct: 185 DLARHTLLHDSSR----RDWQAYIRQLDMQQQINVQQGPIFSHSAMVIQAAVHGQGVALA 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   D   LV    DV+      Y    ++    GK+ AFR ++  +A
Sbjct: 241 NNVMAQTEIDAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWVLAQA 293


>gi|190575828|ref|YP_001973673.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190013750|emb|CAQ47385.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 294

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 122/292 (41%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VAR  SF  A  +L LS S++S  I  LE  +G+ LF+R  R + LTE G
Sbjct: 5   NLTHLAAFAAVARHRSFRRAGAELALSTSAVSYAIRALEERLGVGLFHRTTRSVALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++     E+ +    P+G LRI  T       L   L  FL  +PD++
Sbjct: 65  QRLLERLQPALGQVNDALEEMNQFRAAPAGLLRINATRAAVPTQLGPRLARFLHAHPDVR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  ++  +DI  +  D  +RL + +    +       +      +P YL+    P   
Sbjct: 125 VELTENDGLVDIVAEGYDAGVRLHEFVPEDMVAVPMGPPLRGLIVGSPDYLRRRPAPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I F        +         + +       L +    ++++  + G G+A 
Sbjct: 185 RDLATHECIRFRFASGHLYKW--QFERGGQALEIDVPGRLTLCEQGTVVRAVLDGIGLAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + +   +   ++  +V ++ED   P       YP+  +  G L+AF + +  
Sbjct: 243 VLEDTARPYIESGQMVAVLEDWSEPFAGFALYYPKQRQMPGALRAFVDMLRE 294


>gi|197122067|ref|YP_002134018.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171916|gb|ACG72889.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 301

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++ VF  V  +GSFT AA  L L +SS+SR ++ LE ++GI+L  R  R L+LT+ 
Sbjct: 1   MDLNRIAVFAQVVEAGSFTAAAASLGLRKSSVSRAVAALEADLGIRLLQRTTRRLSLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +  T +    L     E      +P G +R+   +DL  + L      FL  +P +
Sbjct: 61  GRAYYERTRDALAGLREASEEAAALGAEPRGTVRVTAPVDLAPD-LARLTDAFLRAHPQV 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ L  + +D+  +  D AIR    +  SSL+ RKL    +  +AAP YL     P  
Sbjct: 120 RVEVSLTARYVDLVKEGFDLAIRAG-VLADSSLLARKLSDSALALFAAPSYLDARGRPRR 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +H+ + +       +         ++     R +    + +  +    + G+GIA
Sbjct: 179 LADLARHDCLLYRAGAETAVWRLTGRRGEEQVTVHGRAAA---DEFAFVRGMLLAGAGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+P  +V        + R++   +     V   +P        +  FR+ I    
Sbjct: 236 LVPTGMVAAPLREGAIERVLPQYVRRGGPVSVVWPSRRYEPVAVARFRDAIVAAL 290


>gi|114046062|ref|YP_736612.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113887504|gb|ABI41555.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 330

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  
Sbjct: 1   MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  ++ +  +  +L+ T  E+     + SG LRI        N+L   +  F+ L+P +
Sbjct: 61  GSHFYQRSLNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMNVLMRAIFRFMDLHPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I   + +D+  +  D A  +   + +  L+ R + T  +  YA+P YL     P +
Sbjct: 121 TVEVINSAEAVDMVKNNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPDYLAKHGTPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QE++ HN+  F     K   +      +              NS    +++ + G GI 
Sbjct: 181 SQEIESHNVSLFRLSNGKIFNEL----WIGEEQAVRVRGNFCSNSVQVAVEFALQGRGIV 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P  +V +      LV ++ ++       Y  YP     +   + F +FI  + 
Sbjct: 237 YAPTEVVSEYVTAGQLVTLLPEIDPHPGECYLAYPSRRYVSLASRRFIDFIIQEL 291


>gi|260466672|ref|ZP_05812859.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029535|gb|EEW30824.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 301

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 10/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F   A SGS + AA  L    +++SR++S LE  +  +L  R  R LTLT+
Sbjct: 1   MDRLEAMSLFVAAAESGSLSAAARHLGTPLATVSRKVSELERHLKTRLLNRSTRRLTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   +   +         P+G+L I  +I  G+  +   +  FL  YP 
Sbjct: 61  AGHAYLAACRRILEDVGDAERTAGGEYSAPTGELIITASIVFGRLHVLPVVTAFLAAYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L ++   ++ D+ D AIR+ + +  S ++  ++ +I   A A+P YL     P 
Sbjct: 121 VDIRLTLGDRIAQLAEDHIDLAIRIGR-LPDSRMVATRVGSIRHVACASPAYLAEHGAPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
           + ++L+ H+ ITF  L         W   VD+  +  P  S L+VN+  + +     G G
Sbjct: 180 TPKDLETHSCITFEGLGSLA----TWTFAVDKSDVPVPVRSRLRVNTAEAAIDAATAGVG 235

Query: 241 IALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  +  Y       +  L  ++ED     + V   +    +   KL+AF +F   + R+
Sbjct: 236 MTRVLSYQIVAAVRSGALQPVLEDFEPEPWPVNLVHAGQGRLPVKLRAFLDFAGPRLRE 294


>gi|86747948|ref|YP_484444.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570976|gb|ABD05533.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 304

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 128/297 (43%), Gaps = 6/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   +++R F  +A  GS +  A  L++ QS+++RQ+  LE  +G  L  R  R +TLTE
Sbjct: 5   AITIERIRTFVRIAERGSLSAVARDLNVGQSTVTRQLQELEAAIGAPLLSRTTRRVTLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS+ +    ++   LE    E   +S   +G +RI+ T   G   +   +  F   YP+
Sbjct: 65  EGSRYYARCVQILRLLEQAGDEALGASGAQAGTIRISCTASFGILHVCRLIFAFQDRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L +  ID+  +  D A+RL  P+  SS+  R L        A+P YL     P 
Sbjct: 125 IGVDLGLTDHRIDLVREGVDLALRLA-PLTESSMKLRTLGHSQRLLVASPDYLSAHGRPT 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H  +   ++    M         +     P    L+V+  L+  +  + G GI
Sbjct: 184 SPHDLSGHQGVRMMNVAGSDM--LVLQGPGEETHRVPFGGKLRVDHGLAAREAMIAGRGI 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A    ++V D      L  I+ +    +  +            +++   +F+  + R
Sbjct: 242 AATHRWLVDDLLAAGRLEVILPEYRLAAVPLNLLIVPERAGIARVRLLIDFLVEQIR 298


>gi|212709363|ref|ZP_03317491.1| hypothetical protein PROVALCAL_00399 [Providencia alcalifaciens DSM
           30120]
 gi|212688275|gb|EEB47803.1| hypothetical protein PROVALCAL_00399 [Providencia alcalifaciens DSM
           30120]
          Length = 304

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 135/292 (46%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +   GS + AA++L +S++ ++R ++ +E   G++L  R  R L+LT 
Sbjct: 1   MDRLKAVQVFITIVEQGSLSGAADKLDMSRAMVTRYLAEMEQWAGVRLLNRTTRRLSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +++ + ++     +  +E +  +   +G +RI+ +  + Q  L   + EFL +YP+
Sbjct: 61  AGEGVYQQSLQLNALSLSVPVEQKHDAKALAGLVRISCSQSIAQCALSLAISEFLQIYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I + + NK +++  +  D AIR+   ++  +LI + L T H    A+P +L+    P+
Sbjct: 121 MMIDMQISNKSVNLIEERIDLAIRITNQLE-PNLIAKPLSTCHSVICASPKFLQGKHLPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L     +T+                            L  N  + +M+  + G+GI
Sbjct: 180 KPEDLVLMECLTYSFFGRSMWR----FEKEGEESTVLVDGRLSANESVFLMEATLNGAGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ P Y V     +  L++++ D       +Y  Y         L+A  +F+
Sbjct: 236 SMQPYYSVASYLQSGELIQLLPDYTPMPLGIYGVYTSRQHMPTPLRAVIDFL 287


>gi|116249212|ref|YP_765053.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253862|emb|CAK12257.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 298

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 124/293 (42%), Gaps = 7/293 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D + ++R F  VA+  SFT AA +L +++S++S  IS LE  +G++L  R  R +  
Sbjct: 1   MRRDEFTEMRAFLEVAQERSFTRAASKLGVTRSALSHTISALEARLGVRLLSRTTRDVAP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G++L       +  +      L     KPSG +R+    D  + + +  L  FL  Y
Sbjct: 61  TAAGARLMESIQPHFESIAAGISALGALRDKPSGTVRLVCPDDAVELVFRSRLPAFLRDY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI ++LI+DN   +I     D  +RL + I    +  R    I      +  Y      
Sbjct: 121 PDITVELIVDNGFTNIVERQFDAGVRLGEAIARDMVAVRIGPDISYAVVGSTDYFAARTV 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P +  +L  HN +     +P     + W    D      R+   L +++    +   + G
Sbjct: 181 PSTPHDLTDHNCVNL--RLPTSGALYAWEFEKDGREFSVRVEGQLVMSNIGPAINAALDG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +G++ +P  +++   D+  L  ++ D        +  YP     +    AF  
Sbjct: 239 AGLSYVPRDLIRQYCDSGQLHEVLADWAPTFQGYHLYYPSRRHPSPAFSAFVE 291


>gi|152979199|ref|YP_001344828.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150840922|gb|ABR74893.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 299

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 132/292 (45%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF+ +A  G    A+ +L ++  S+S+ +  LE  +G+ LF R  R + LTE G +L 
Sbjct: 9   LTVFHAIAEQGGIAAASRKLEIAPPSVSQSLKLLEKHIGLPLFNRTTRKMELTEAGLRLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T ++   LE     +Q+    P+G +RI       Q +L+ +  EF  LYP I++++ 
Sbjct: 69  ENTEQLMRSLEYAVESVQDLGEIPTGTVRITVPRFAYQLILKPHFAEFCRLYPHIRLEIS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQEL 186
           + +  +DI     D  IR    I+  +++ RKL+   H   Y +  Y +    PL+ Q+L
Sbjct: 129 VHDGTVDILQQGFDLGIRFGDKIE-QNMVARKLLEPFHEGLYVSRSYAEQYGIPLTPQDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H LI +  +    +     L+   + +     S L  N    +      G GI  +  
Sbjct: 188 HRHFLIGYRFITSNRIYPLT-LSRNGQDLIVEMESRLISNDIDMMADAVRAGLGIGRIFS 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            I +   D   L+ +++D       VY  YP+  +   +++    F+  K +
Sbjct: 247 PIRRLQPDADELLPVLKDYWKTYPPVYLYYPQHSQKAKRIQVLIEFLSEKFK 298


>gi|107028377|ref|YP_625472.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686373|ref|YP_839620.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897541|gb|ABF80499.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652088|gb|ABK12727.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 307

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 12/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  V R+GSF+ AA +L +  +++SR+I   E  +G +L +R  R L  + +
Sbjct: 2   LDLNDLALFVQVVRAGSFSEAARRLRMPANTLSRRIDQFEGHIGTRLLHRSTRKLAPSTE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    +    ++   + +  +    P+G +R+A    L + +    L EF   YP I
Sbjct: 62  GLALFERYAPALDRIFEIERQHADGQE-PAGTVRVAAMAGLFEVIKLEWLAEFYARYPRI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +LD+   D+  +  D A+R+       S   R++    M   A+P YL+    P +
Sbjct: 121 SIDFLLDDTPSDLIAERIDLALRIGIE-TGGSFRVRRIAPGTMILAASPAYLERRGTPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            +EL  H+ +T      + M    W     R   E  I S   VN    +MQ C+ G GI
Sbjct: 180 PRELADHDCLTVSSRQGRSM----WRLQGPRGTQEISIDSRFSVNDMRVVMQACLAGLGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+P  +     D   L R++           +   Y         + A   F+  K 
Sbjct: 236 ALVPQVLAAAAIDEGKLARVLPAYQRSGAGLGLQLVYTSRPPLPPAVTAVAEFLLEKL 293


>gi|261344751|ref|ZP_05972395.1| hypothetical protein PROVRUST_06010 [Providencia rustigianii DSM
           4541]
 gi|282567194|gb|EFB72729.1| glycine cleavage system transcriptional activator [Providencia
           rustigianii DSM 4541]
          Length = 313

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 126/293 (43%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++ +       L   L  F   +P I +
Sbjct: 68  SYYLDIKEIFSSLNEATRKLQARSA--KGALTVSLSPSFAIQWLVPRLSGFNQAFPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   K    S L   +L   ++    +P  L   ++    +
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGKG-NWSGLRTDRLYAEYLMPVCSPTLLTGEKQLKIPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH L+          +   ++  +D             +    ++Q  V G G+AL 
Sbjct: 185 DLAKHTLLHDSSR----RDWQAYVKQLDIQNVVNVQQGPIFSHSAMVIQAAVHGQGVALA 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + K   D   LV    +V+      Y    E     GK+ AFR +I  +A
Sbjct: 241 NNVMAKNEIDAGRLVCPFSEVLVSKNAFYLVCQENQAEIGKIAAFRQWILAQA 293


>gi|330014685|ref|ZP_08307955.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328532829|gb|EGF59610.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 304

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 125/295 (42%), Gaps = 11/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L +F  +   GSF+ AA  L +S+   +  I  LE  +G +L +R  R +  T 
Sbjct: 1   MDKLDTLTLFVRIVERGSFSAAAADLGVSRPVATAAIKALEVSLGARLLHRTTRHVRPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS  ++    +   LE      + +    SG +R+    +L + LL   L +FL  YPD
Sbjct: 61  EGSLYYQRCVSILAALEEA---NRSAGGSISGTIRVDVAGNLARTLLLPALPQFLARYPD 117

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +Q+    +D+D+  +  DC IR    +  S +I R L  +     A+P YL     P 
Sbjct: 118 ITLQIGESERDVDLVREGVDCVIR-GGHLPDSEMICRPLAGLQEITCASPTYLARYGTPH 176

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           +I+ L  H +I F  +  +         T D    E  + C L  +      +   LG G
Sbjct: 177 TIEGLTGHVMIGF--VSSRAHRTLPLSFTQDGRQSEVSLPCRLLTSDADVGAEAARLGFG 234

Query: 241 I--ALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  A LP       +  L  ++ D       +   YP   + + +++ F +++  
Sbjct: 235 LYQAPLPRLEADLASGALTEVLADFRPAPLPLSLLYPSNRQLSARVQVFIDWVTA 289


>gi|304395242|ref|ZP_07377126.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304357495|gb|EFM21858.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 292

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 136/295 (46%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LR++  V  +G+FT AAEQL LS+  +SR+++ LE  +G++L  R+ R L++T+ 
Sbjct: 1   MQIEDLRIYVAVMHAGNFTAAAEQLMLSKQYVSRRMAALEASLGVRLLIRNTRKLSVTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +    +  +++  ++ + E      G  RI   +  G + L   + EFL  +P +
Sbjct: 61  GLLFAQHAQRILDEIQEAELAVSEQQQALRGTFRINMPMSFGMSHLSPLIAEFLSHHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q Q+ L ++  D+  +  D AIR+   +  S+LI R L  +      +P YL+    P  
Sbjct: 121 QFQIELADRYADVIGEGVDMAIRIG-TLADSTLIARPLGELKRVICCSPRYLERAGTPQQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L +H  + +G       E    L    +P        +  N+   +    + G G+ 
Sbjct: 180 PEALLQHACLRYGREGQNGWE----LQVNGKPKWLAVQGPMVSNNGEVLRDAALAGLGLV 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP +IV+       LV +++D +    ++   YP+  + +   +    F+  + 
Sbjct: 236 LLPAFIVETALQRGELVTVLDDYLPSPLSLNAVYPQHRQRSEVNRQLLAFLQARL 290


>gi|317494709|ref|ZP_07953121.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917311|gb|EFV38658.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 310

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 132/298 (44%), Gaps = 11/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                LR+F  V   GSF+  A    ++ SSISRQ+  +E  +  +L YRH R +T TE 
Sbjct: 7   LSIKSLRLFVAVIDYGSFSAVARNEGIAPSSISRQMQQMEQALNQQLLYRHTRAVTATES 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      V  +LE  +  LQE  ++P+G +RI   +  G+  +   + E    +P +
Sbjct: 67  GRLLATYARRVLEQLEEAEQALQEKKLEPAGLVRINAPVVFGRLHIAPYIPELCHKHPKL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+  +  ID   D +D   R+   +  S+L  R L   +    A+P YL+    P S
Sbjct: 127 CVELVQTDNFIDPMQDASDLLFRIG-ILSDSNLQGRVLAQQNYRIAASPEYLRRFGVPSS 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL+ HN + F            +    ++ +       L  N+  S++   + G GI 
Sbjct: 186 PEELEHHNCLVFKGFAGAQRW---FFQCKNQWVPYNLHGSLTGNNADSLLDAAIQGLGIV 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + P +++ D   +  LV +ME            +   YP++ +   K++   +F   K
Sbjct: 243 VFPTWLLGDALKDGRLVSLMEKYPVSTRLEPQQLAALYPQSRRLPLKVRVVIDFFVQK 300


>gi|260555324|ref|ZP_05827545.1| transcriptional regulatory protein [Acinetobacter baumannii ATCC
           19606]
 gi|260411866|gb|EEX05163.1| transcriptional regulatory protein [Acinetobacter baumannii ATCC
           19606]
          Length = 296

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 130/296 (43%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT 
Sbjct: 1   MDRLDCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLNRTTRQMNLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K ++    +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP 
Sbjct: 61  CGEKFYQHCKVILSEFEWATYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREP 180
           I+I L + ++ +D++    D  IRL     + SL   K++ T   + YA P Y      P
Sbjct: 121 IKIDLFMTDQLLDVNQHKFDLTIRLDG--SAPSLANSKILNTYQRYLYATPEYFNQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL +H  + +          F       + +       +  N+   ++  C+   G
Sbjct: 179 TSLEELKEHKFLIYYQDSRHKKLIFQ---KDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+  +
Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFLTHQ 291


>gi|207728305|ref|YP_002256699.1| hypothetical protein RSMK04635 [Ralstonia solanacearum MolK2]
 gi|206591551|emb|CAQ57163.1| hypothetical protein RSMK04635 [Ralstonia solanacearum MolK2]
          Length = 319

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LE ++G +L  R +  + +T  G 
Sbjct: 18  FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAELEAQLGTRLLQRASHRVCVTPVGE 77

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + L+ G L EF   +P ++I
Sbjct: 78  AVYRHAREMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLVSGWLAEFAQAHPKLRI 137

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L + N  +D+     D AIR    P+ S  ++ R L         +P  +    EP S 
Sbjct: 138 ELEVSNPYVDLIEQRIDVAIRAATGPLPSRDVVARHLGASPRVLVGSPALIARVGEPDSP 197

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             LD    +  G L      D+  L         P    L  ++ +++ +  V G G A+
Sbjct: 198 AGLDALPCLGQGTLAR--CRDWVLLDARGHRHALPIRPRLATDNLIALREAAVAGLGFAV 255

Query: 244 LP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP    +       L  ++         ++  YP        ++A  +F+  +
Sbjct: 256 LPLHCCHAALREGQLRTVLPAWTPEPADLHALYPSRAGVPPSVRALVSFLRER 308


>gi|15966670|ref|NP_387023.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15075942|emb|CAC47496.1| Transcription regulator LysR family [Sinorhizobium meliloti 1021]
          Length = 310

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 129/292 (44%), Gaps = 6/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               +++R F  VA  GS +  A +L + QS+++R +  LE  VG+ L  R  R + +T+
Sbjct: 5   DITLERMRTFARVAERGSLSAVARELGVGQSTVTRHLRELEEAVGVPLLSRTTRRVMMTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS+ +  + E+   +E    E++ +    +G +R++ T   G   +   +  F  L+P+
Sbjct: 65  EGSRYYARSVEILRLVEQASDEVRGTRGAQAGTIRVSCTAAFGVLHVSRLIFAFQDLFPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L L ++ +D+  +  D AIRL  P+  SS+  + L        AAP YL     P 
Sbjct: 125 IGIDLSLSDERVDLVREGIDVAIRLG-PVSDSSMRMKALGQSRRLLVAAPAYLAERGRPA 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + QEL  H  I   ++     E         +    P    L+V+  L++ +  + G GI
Sbjct: 184 TPQELIGHEGIRMSNVSGS--ETLALQRRDGKYHAVPFGGRLRVDHGLAVREALIAGRGI 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                ++V D      +  ++     PS  +            +++   +F+
Sbjct: 242 VPAHRWLVGDLLEAGRIEAVLPGYSLPSVPLNMLIVPERAGISRVRLLIDFL 293


>gi|33601804|ref|NP_889364.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33576241|emb|CAE33320.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 301

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 121/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F        F  A   L + +S +SR+I+ LE  +G++L  R  R  ++T+ G
Sbjct: 3   DLNDLYYFVQTVDHRGFAPAGRALGMPKSKLSRRIAVLEERLGVRLIQRSTRHFSVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  Q  +  + V+P G +R++  + L    +   L EF+L YP + 
Sbjct: 63  QTYYEHCKAMLVEAEAAQEAIDAAQVEPRGVVRLSCPVALLHTHVGAMLGEFMLRYPRVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P+++S L+ R          A+P  L     P  
Sbjct: 123 LHLDASNRRVDVLGEGVDVAIRVRPPPLENSDLVMRPFADRGQCLVASPALLARHGAPAL 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G  +P     +            P    +     L++    V G G+ 
Sbjct: 183 PADLAAWPSLALG--LPNQPHSWLLTGPQGAQATVPLAPRMVTTDMLALRSAAVAGVGVV 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V+    +  LVR++ +       ++  +P        ++   +F+  +
Sbjct: 241 QLPSMMVRGQLADGTLVRLLPEWAPCRELIHAVFPSRRGLLSSVRTLVDFLAER 294


>gi|261253484|ref|ZP_05946057.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
 gi|260936875|gb|EEX92864.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
          Length = 293

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  +   GSFT  AEQ   S+S +S++IS LE E+G +L +R  R + LT  G 
Sbjct: 4   LRAIELFVRLTEVGSFTRLAEQQRTSKSMVSKEISRLEQELGARLLHRTTRNIQLTYVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +  +E+  K+E     ++  +  P GK+++   + LG   L     +F+  +PD+ +
Sbjct: 64  EYLKYANEILAKIENADAFVKTLAQAPRGKIKVNAPMALGITDLSMLFADFMQAFPDVDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +++ID+  +  D   R       S+ I + L   + H  A+  Y  +     + Q
Sbjct: 124 DIHLGDENIDLVAEGFDLGFRASSQTFDSNYIGKALCEFNYHLCASRDYFSHHAPIQTKQ 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN   +     K +   + +              L+VNS L ++Q    G GI  L
Sbjct: 184 DLLQHNCFEYSYFKGKNVWPVDGVIATS--------GSLRVNSVLFMLQVIKAGRGIGYL 235

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+++ +   +N  LV ++ D      T+Y  YP        +    NF+
Sbjct: 236 PEFVCRELLENGQLVEVLPDSEKSKLTLYALYPARQFVPPAVLQCINFV 284


>gi|152986927|ref|YP_001345657.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150962085|gb|ABR84110.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 310

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 121/299 (40%), Gaps = 4/299 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               ++ F   A +GSF  AA +L L+ + + + ++ LE+ +G++LF R  R L LTE G
Sbjct: 3   TLSNIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +        ++T    +     +PSG L+++  +  G++ +   L EFL  YP I 
Sbjct: 63  ERFLQEVGGSLAGIQTALANVSNVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPGIV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+  +  D AI     +    ++ R L   H+   A+P YL++       
Sbjct: 123 PDWHFDNRQVDLIGEGFDAAIGGGFELP-PGVVARHLTPGHLILLASPAYLRDKPPIRHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I         +  +                 + ++   +  +   +G GI L
Sbjct: 182 GDLCDFDGIRIRSPQTGRVRPWPLRRRDGEQAPIELRERMTMSDPEATCEVAAMGLGITL 241

Query: 244 L---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +     Y   ++  LVR++ D    +      Y        K + F +F+    R  + 
Sbjct: 242 VCMQHAYAYLESGALVRVLPDWYVDAGNTSLYYAANRLLPAKTRVFVDFVVDYFRRQEL 300


>gi|49083952|gb|AAT51161.1| PA0181 [synthetic construct]
          Length = 311

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 122/299 (40%), Gaps = 4/299 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               ++ F   A +GSF  AA +L L+ + + + ++ LE+ +G++LF R  R LTLTE G
Sbjct: 3   TLSNIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +        ++T    +     +PSG L+++  +  G++ +   L EFL  YPDI 
Sbjct: 63  ERFLQEVGGSLEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+  +  D AI     +    ++ R L   H+   A+P YL++       
Sbjct: 123 PDWHFDNRQVDLIGEGFDAAIGGGFELP-PGVVARNLTPGHLILLASPTYLRDKPPIRHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I         +  +                 + ++   +  +   +G GI L
Sbjct: 182 GDLGGFDGIRIRSPQTGRVRSWPLRRRNGEEAPIELRERMTMSDPEATCEVAAMGLGITL 241

Query: 244 L---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +     Y   ++  LVR++ D    +      Y        K + F +F+    R    
Sbjct: 242 VCMQHAYAYLESGALVRVLPDWYVDAGNTSLYYAANKLLPAKTRVFVDFVVDYFRRQDL 300


>gi|107027036|ref|YP_624547.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691767|ref|YP_837300.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896410|gb|ABF79574.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649767|gb|ABK10407.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 313

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 125/296 (42%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    E     +   +    G LR++  ID G  ++   +      +P 
Sbjct: 66  AGRVFYDACRDIVRATEAALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAVVALRDRHPA 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+ +++ +D+  D  D AIR+ + +  S+    +L T      A+P ++     P 
Sbjct: 126 LAVELVANDRVVDLVADNLDVAIRIGR-LADSNYRAVQLGTYEKWLVASPAFVARHGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +    L      + +             ++ +  N+  +     + G G 
Sbjct: 185 DPDALAALPFVMLSSLPRPHTLELD--DARGGRASVRCVAPVVSNTATACRAIVLAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LL D+   D+     LVR++    T    ++  YP     + K++AF   +  K 
Sbjct: 243 GLLTDFSTADDVAAGRLVRLLPGWRTAPAGIHAVYPSTRLPSPKVRAFIEAMKGKL 298


>gi|167561621|ref|ZP_02354537.1| putative LysR family transcriptional regulator [Burkholderia
           oklahomensis EO147]
 gi|167568857|ref|ZP_02361731.1| putative LysR family transcriptional regulator [Burkholderia
           oklahomensis C6786]
          Length = 310

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 119/295 (40%), Gaps = 5/295 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAKVSTRLFERSTRRLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     SGK+R+++T D G+N L   L EF   YPD
Sbjct: 61  EGRLYLNCCRQALQALDDADAMLQEGRNIVSGKVRLSSTSDFGRNQLLDWLDEFNARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   +   +   ++  D  D AIR   P    +LI R+L        A+P ++     P 
Sbjct: 121 VTFAVTASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCASPAFVDKHGAPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                      V +    P  +  + N      ++ + G GI
Sbjct: 180 DPLDLARFPCNVITVASGPINVWRFTRGDVTQTHTVPLANAHETNDGGLTREWTIRGYGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           AL   + +  +     L  ++ +       ++  Y        +++   +F+  +
Sbjct: 240 ALKSIWDIAADVRAGRLKVLLPEWRHHDAPLHAIYHGKRYMAPRVRVLLDFLVER 294


>gi|56551677|ref|YP_162516.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|260752741|ref|YP_003225634.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56543251|gb|AAV89405.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|258552104|gb|ACV75050.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 315

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 8/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L  F  VAR  +F+ AA++L +S S++S+ I  LE  +G+ LF+R  R + LT+ G+
Sbjct: 6   LDGLVAFVCVARLANFSSAAQRLGVSPSAVSQSIRALEQRLGVMLFHRTTRSVNLTDAGA 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +          +L +   ++ + S  PSG LR+          L+  L++FL  YP++++
Sbjct: 66  RFLARVQPAVDELISASTDVGDDSGPPSGLLRLIMPRSGYLLALRPLLRDFLEAYPEMKM 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +DN  +D+S    D  IR    ++          ++  +  A+P Y+         +
Sbjct: 126 EIAIDNTMVDLSSHGFDAGIRFGGFVEKDVTSVNIGPSMRWYVVASPEYVAKRGIARHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI--- 241
           +L  H  I F     + ++ +N+    +  +       L +     ++Q  + G G+   
Sbjct: 186 DLLGHECIKFRRTSGEIIQRWNFTNKNENLMINID-GRLVLGDLAVMVQAALDGLGVIYT 244

Query: 242 --ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               +  +I  +   LVR++ D   P+  +   YP   + + K+K   +++   A
Sbjct: 245 VNGYVERFI--EEGRLVRMLADWSPPTSGLVLYYPAKPRISRKVKVLIDYLQEHA 297


>gi|325276018|ref|ZP_08141837.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324098850|gb|EGB96877.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 309

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 121/296 (40%), Gaps = 4/296 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ L  F   A  GSF  AA +L ++ +++ + ++ LE  +G++LF R  R LTLTE G
Sbjct: 3   SFNALECFIRSAEVGSFAEAARRLRITPAAVGKHVAQLEARLGVRLFQRSTRKLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     S+ +  ++     L  +  +P+G LR++     G+  +   L EFL  YP I 
Sbjct: 63  QRFLGEVSDSFRTIQYAVANLASAEGQPAGLLRVSMGTVFGRLYVLPLLGEFLRRYPAIT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+     D AI     +    ++ RKL   H    AAP YL+   +    
Sbjct: 123 PDWHFDNRQVDLIGQGFDAAIGGGFELP-PGVVARKLTPAHRVLVAAPAYLQRHAQIDEP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H+ I         +  +   +             + ++   +       G GIAL
Sbjct: 182 PVLQRHDGILIRSPQTGRVRSWPLTSRWQGQQPLLLRQAMTMSDSDAACAVAEQGLGIAL 241

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +             L R++ D       +   + E     GK +AF +FI  +  +
Sbjct: 242 VSLPFAVPYLQAGRLQRVLPDWYVDDGHISLYFAEHKLLPGKTRAFVDFIVEQFAE 297


>gi|270156590|ref|ZP_06185247.1| LysR family transcriptional regulator [Legionella longbeachae
           D-4968]
 gi|289164951|ref|YP_003455089.1| transcriptional regulator, LysR family [Legionella longbeachae
           NSW150]
 gi|269988615|gb|EEZ94869.1| LysR family transcriptional regulator [Legionella longbeachae
           D-4968]
 gi|288858124|emb|CBJ11990.1| putative transcriptional regulator, LysR family [Legionella
           longbeachae NSW150]
          Length = 299

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 131/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +++VF  V  S SF  AA  L +S +S++R+I+ LE  +G+ L  R+ R  +LT  G   
Sbjct: 4   EIQVFIQVVDSNSFYKAANVLKMSPASVTRKIARLEASLGVTLLNRNTRRFSLTSYGEYC 63

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    +   +      + +    P G L ++     G   L   + EF+  +P I+I  
Sbjct: 64  YQHCQMISGLVSELHQSIADKIKSPKGTLHLSIAAYSGYMELIPIISEFIKKFPLIKINY 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              N   D   D  D   R ++ I + +L  +KL+   +   A+PHYL++   P    +L
Sbjct: 124 FKSNIYPDFIEDTFDFYFRYKE-IHTRTLQSQKLIEHQLICCASPHYLQHHGMPEHPHDL 182

Query: 187 DKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             HN I    +L    + DF+     ++ I       L+VN+    ++  + G GIA LP
Sbjct: 183 IDHNCIIHQINLYEGEIWDFD---DNNQLISVTASGNLRVNNSALALEAVMEGIGIARLP 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            Y  +   DN  LV ++ +   P  TV+  +P     +   K F  ++    R
Sbjct: 240 QYFFQNHLDNGELVEVLVNYRCPPLTVWLIHPRNQYMSYHHKIFMEYLVEAYR 292


>gi|218529252|ref|YP_002420068.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218521555|gb|ACK82140.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 307

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 119/292 (40%), Gaps = 11/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  +  +GS + A  Q  LS  ++SR+++ LE E+G++L +R  R + LT
Sbjct: 1   MPMNLLDVALFCAIVTTGSLSAAGRQAGLSPMAVSRRLAALEHELGVRLIHRTTRSVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G     +   +    E       E     SG LR+     +G+ L+   +   +   P
Sbjct: 61  ADGETFLPLAQTMLEAQEAATAAFSEQHEGLSGVLRVTAPHRIGRALVVPLVVRLMAENP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L   +  +DI     D AIR+   +Q+S L+   +        AA  YL     P
Sbjct: 121 RLKVDLTFSDGIVDIVAGGIDVAIRVA-TLQASELVAVHVADNPRILCAATAYLAAHGCP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +LD H  +T   +                PI +     L  +S  ++   CV G+G
Sbjct: 180 ERLADLDAHACLTLHAMDAWT------FRQAGHPIAKRIKGRLAASSVDTVHAACVAGAG 233

Query: 241 IALLPDYIVKDN---PNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +ALL  + V+ +     L  + + D       ++   P       +++ F +
Sbjct: 234 LALLTYWDVEQDLANGTLKALTLNDAEPEQLAIWAVLPTRQHMPARVRRFID 285


>gi|212712113|ref|ZP_03320241.1| hypothetical protein PROVALCAL_03193 [Providencia alcalifaciens DSM
           30120]
 gi|212685254|gb|EEB44782.1| hypothetical protein PROVALCAL_03193 [Providencia alcalifaciens DSM
           30120]
          Length = 313

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++ +       L   L  F   +P I +
Sbjct: 68  SYYLDIKEIFSSLNEATRKLQARSA--KGALTVSLSPSFAIQWLVPRLSGFNQAFPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +    + L   +L   ++    +P  L    +  + +
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWTGLRTDRLYAEYLMPVCSPSLLTGGNQLKNPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH L+          +   ++  +D             +    ++Q  V G G+AL 
Sbjct: 185 DLAKHTLLHDSSR----RDWQAYVKQLDLQNIVNVQQGPIFSHSSMVIQAAVHGQGVALT 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + K   D   LV    +V+      Y    E+  + GK+ AFR +I  +A
Sbjct: 241 NNVMAKNEIDAGRLVCPFSEVLVSKNAFYLVCQESQADLGKIAAFRQWILAQA 293


>gi|37527978|ref|NP_931323.1| hypothetical protein plu4133 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787414|emb|CAE16505.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 302

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 138/292 (47%), Gaps = 10/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  S   + AA +L ++ S++S+ I+ LE  +G++L  R  R L LT +GS  
Sbjct: 9   EMAVFVQVIESEGLSAAARKLDMTPSAVSKLINRLEMRLGVRLLNRTTRKLQLTAEGSVF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +   +   + E  + +    G++R+   +  G++ L   L +FL  YP+I + +
Sbjct: 69  YERSVRILEDIIAAEQEANQGTA-LRGRIRVNCHVAFGKHCLMPLLPDFLQRYPEITLDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  D +D AIR   P+  S  + RKL    M    +P YL+    P    +L
Sbjct: 128 SLCDLIVDLLDDRSDVAIRTG-PLDDSCFMVRKLGASRMVVVGSPSYLERMGIPSMPSDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            ++N + FG    + M+ + ++ + +     P    L +    ++ +  + G G+A L  
Sbjct: 187 GRYNRLGFG--FTRHMKAWPFIDSEEWGQQLPS-GNLLLGDGETMRKAAIAGLGLARLAR 243

Query: 247 YIVKDNPN---LVRIMEDVIT-PSFTVYFCYP-EALKNTGKLKAFRNFIFLK 293
           + V  +     L+ ++E+        +Y  +  +  +   +++ F +++  +
Sbjct: 244 FHVDADIRSGLLLPVLENYNPGDKEEIYAVFVGQGRQLPSRVRVFLDYLTER 295


>gi|332524992|ref|ZP_08401176.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332108285|gb|EGJ09509.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 311

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 128/292 (43%), Gaps = 11/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +A  GS + AA  L L + ++SRQ+  LE  +  +L +R  R L LTE G++++
Sbjct: 12  MITFAHIAAQGSISGAAASLGLDKGAVSRQLRALEDLLDTRLMHRSTRRLVLTEAGAQVY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +LE TQ +      +P G L ++ ++  G   L   +  FL  YPD+++QL 
Sbjct: 72  ERAQRLLQELEQTQADAVSLRSQPRGVLTVSASVAFGTRHLVPLVPAFLQRYPDVELQLC 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  D  +RL        L+ ++L  I     A+P          +  +L 
Sbjct: 132 LLDRHVDPMEEGVDVLLRLCDTPPDP-LVAQRLCAIDYAVVASPGLAHGAGV-TTPADLR 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               + +G         F   A        P  + + VNS  ++    V G G ALLP +
Sbjct: 190 DRPCLFYGFKSRSARWRFTQGAATQE---VPVTTRVSVNSSEAVRDLAVRGLGFALLPRF 246

Query: 248 IVKDN---PNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLK 293
            V D+     L+R++ D         ++Y  +      + K++ F +F+  +
Sbjct: 247 AVDDDLAAGRLIRVLADHQAHGNLGSSLYALHLPGAHKSPKVRCFVDFVRER 298


>gi|284008533|emb|CBA75066.1| glycine cleavage system transcriptional activator (LysR-family
           transcriptional regulator) [Arsenophonus nasoniae]
          Length = 307

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 126/293 (43%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L+++Q++IS QI GLE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELYVTQAAISHQIKGLENFLGMKLFRRRNRSLLLTEEGL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ       G L ++         L   L  F   YPDI +
Sbjct: 68  NYYLDIKEIFSSLREATRKLQAFRA--KGALTVSLLPSFAIQWLVPRLSSFNHAYPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + + D   D  D AI          L   +L   ++    AP  L         Q
Sbjct: 126 RIQAVDHEGDKMADDVDVAIFYGYG-NWPGLKTDRLYAEYLIPVCAPALLAGRYPLKKPQ 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   D   +  + +    ++   I   +      +    ++Q  + G GIAL+
Sbjct: 185 DLVHHTLLH--DSSRRDWQAYARQLSLQDIINVEQGPIF--SHSAMVIQAAIHGQGIALI 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + K   D+  LV    DV+      Y    +     GK+ AFR +I  KA
Sbjct: 241 NNVMTKNELDSGRLVCPFNDVLVSKKAFYLVCHDNQAELGKIAAFRQWILAKA 293


>gi|83646550|ref|YP_434985.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634593|gb|ABC30560.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 296

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 131/292 (44%), Gaps = 9/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VAR+ SF+ AAE L LS +++SR+I  LE E GI LF R  R + LTE   
Sbjct: 7   LQNVALFVEVARTRSFSRAAENLGLSTATLSRRIRALERESGISLFTRTTRRVELTEAAR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  +  + Q  L E + +P G LR++  +DLG + +   L EF   YP I  
Sbjct: 67  RYFERCERLVDEAFSAQEALFEEAKRPQGTLRLSMPVDLGVHYIAPLLPEFARRYPGIDF 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L  +  D++ +  D AIRL   ++  +L+ R++  I    +A+P YL+    P   +
Sbjct: 127 EIDLSPQHRDLASEQIDIAIRLG-VVKDQNLVSRRIGWIEQGLFASPTYLQRQPAPSHPE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ I  G            L   +  +         VN+   +      G G+A L
Sbjct: 186 QLSDHDCIIIGAQAQAVWR----LQRANETVEVAVKGRFAVNNVSLMRVLAERGFGVASL 241

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + +D      L+ I+ D   P   V      +   T   KAF +++  +
Sbjct: 242 ATVLARDALAEARLIPILTDWTVPRLPVQAVT-SSRLPTACAKAFISYLAER 292


>gi|26991925|ref|NP_747350.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|148550359|ref|YP_001270461.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|24987050|gb|AAN70814.1|AE016725_7 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
 gi|148514417|gb|ABQ81277.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
 gi|313501224|gb|ADR62590.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 303

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 126/294 (42%), Gaps = 4/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L  R +R  +LTE G
Sbjct: 3   DLNSLYYFTQVVEHGGFAPAGRALDMPKSKLSRRIADLEDRLGVRLLNRTSRHCSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E     ++ +  +P G +RI+    L  + +   L  ++L YP ++
Sbjct: 63  QAYYNRCLAMRVEAEGAAEIIERNRSEPRGLVRISCPTTLLNSWVGPMLTRYMLKYPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D A+R+R  P++++ ++ + L          P YL    +   
Sbjct: 123 LFIESTNRRVDLLHEGFDIALRVRFPPLENTDMVMKVLSNSTQCLVGQPQYLAQLPKGFD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q L     + +G    +   +        R I  P    +  +   ++  + V G GIA
Sbjct: 183 PQLLGTLPSVHWGSAQREYQWELFQGEDNSRSIVIPHTPRMVTDDLFALRHFVVAGVGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP   V+++     LV ++ D       V+  +P        ++A  + +  +
Sbjct: 243 HLPRVAVREDLAAGRLVELIPDWHPRCGIVHAIFPSRRGLLPSVRALIDHLAEE 296


>gi|269967857|ref|ZP_06181901.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827562|gb|EEZ81852.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 309

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 153/298 (51%), Gaps = 10/298 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +KL +   V+++GSF  AA+ +++ +S +S+ I  LE  +G++L  R  R L+LT+
Sbjct: 1   MDLANKLHLLLEVSKAGSFAKAADGMNIDRSVLSKHIKQLEEHLGVRLLNRTTRSLSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++     ++   L+ TQ   +    +PSGK+RI+++   G+  LQ ++++FL  YP 
Sbjct: 61  VGKQIVEKADQISQLLDDTQQIAENFQTEPSGKVRISSSTLFGKLYLQPSIEKFLHKYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L+LD+  +D+     D A R+  P++ SS++ RKL        A+ + ++    P 
Sbjct: 121 ASVELMLDDLHVDVIRSNFDIAFRIG-PMRDSSMVARKLAKNTTAIIASRNLIEKHGNPE 179

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  EL K   I +  G+ I   ++ ++   + D     P      VN    I++    G 
Sbjct: 180 TPDELVKLPFIIYSNGNFIVDKLKFYDKEKS-DGLDTYPISGSYMVNEAELIIKSVKSGL 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK 293
           G AL+  +++    ++ NLV+++ +  T  F  +Y  Y    + +  ++AF + +  +
Sbjct: 239 GAALIGQFMLPNNLESSNLVQLLPEYETQDFGDIYAMY-SHRQQSPLVRAFIDIVQEE 295


>gi|149187968|ref|ZP_01866264.1| Putative transcriptional regulator, LysR family protein [Vibrio
           shilonii AK1]
 gi|148838364|gb|EDL55305.1| Putative transcriptional regulator, LysR family protein [Vibrio
           shilonii AK1]
          Length = 293

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 129/295 (43%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  SG F+ AAE L +  + +SR +S LE+++G+ L  R  R + LT++G +
Sbjct: 6   DDLEILLSVVDSGGFSAAAEVLDVQVAKVSRSVSKLESQLGVTLLNRTTRRIELTDEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E    L+ T+ E+      P G+LR+        + L   + EF   YPDI+++
Sbjct: 66  FVDGVREGLRVLQQTEEEIMARGELPKGRLRVDAASPFVLHQLVPLIAEFNREYPDIELE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  + L    ++  A+P YL     P S  +
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGK-LTDSTLHAKPLGKSLLYLVASPDYLARRGYPKSATD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+LI F                   P        +  ++  ++ Q  + G+GIA + 
Sbjct: 185 LSTHSLIGFVGAKVLNQWPL--------PGNPTIRPSMVSSNGETVRQLTLAGNGIACMS 236

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++VK +     LV ++E     +     V   Y  +     ++ AF  FI  + 
Sbjct: 237 GFMVKQDIEEGLLVPLLESEKLTTTGREQVNAVYYRSSSVARRITAFIEFIQPRL 291


>gi|33592454|ref|NP_880098.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33572100|emb|CAE41638.1| LysR-family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|332381870|gb|AEE66717.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 301

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 121/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F        F  A   L + +S +SR+I+ LE  +G++L  R  R  ++T+ G
Sbjct: 3   DLNDLYYFVQTVDHRGFAPAGRALGMPKSKLSRRIAVLEERLGVRLIQRSTRHFSVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  Q  +  + V+P G +R++  + L    +   L EF+L YP + 
Sbjct: 63  QTYYEHCKAMLVEAEAAQEAIDAAQVEPRGVVRLSCPVALLHTHVGAMLGEFMLRYPRVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P+++S L+ R          A+P  L     P  
Sbjct: 123 LHLDASNRRVDVLGEGVDVAIRVRPPPLENSDLVMRPFADRGQCLVASPALLARHGAPAL 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G  +P     +            P    +     L++    V G G+ 
Sbjct: 183 PADLAAWPRLALG--LPNQPHSWLLTGPQGAQATVPLAPRMVTTDMLALRSAAVAGVGVV 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V+    +  LVR++ +       ++  +P        ++   +F+  +
Sbjct: 241 QLPSMMVRGQLADGTLVRLLPEWAPCRELIHAVFPSRRGLLSSVRTLVDFLAER 294


>gi|116050205|ref|YP_790978.1| transcriptional regulator PtxR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891768|ref|YP_002440635.1| transcriptional regulator PtxR [Pseudomonas aeruginosa LESB58]
 gi|115585426|gb|ABJ11441.1| transcriptional regulator PtxR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218771994|emb|CAW27773.1| transcriptional regulator PtxR [Pseudomonas aeruginosa LESB58]
          Length = 312

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 137/294 (46%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + + L  F  VA   SFT AAE L LS+S +S Q+  LE ++GI+L  R  R +TLT+
Sbjct: 10  HLNLNHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTD 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L  V   +  +L+    ++++   +PSG+LRI    D  +  +      F+  +P 
Sbjct: 70  RGELLFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPK 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++++ D++  D+     D A+R+  P + S L   KL      A A P YL      L
Sbjct: 130 VQVEMLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPGYLAGLPPVL 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +   I    L       F      +R   + R   L  N+ L++ +  + G+G+
Sbjct: 189 QPHDLARCEWIGHTRLSTPWTWTFE--RQRERATVQTR-GRLLANNTLAVYRLVLDGAGV 245

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++LP ++V        LVR++     P   +Y  YP A     +++AF   +  
Sbjct: 246 SVLPSFLVAREIARGRLVRLLPGWRLPQGGIYALYPSARYMPVRVRAFIESLRE 299


>gi|291617440|ref|YP_003520182.1| YagP [Pantoea ananatis LMG 20103]
 gi|291152470|gb|ADD77054.1| YagP [Pantoea ananatis LMG 20103]
          Length = 299

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 127/303 (41%), Gaps = 13/303 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L VF  VA  G+F+ AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPVFIAVAEEGNFSKAAARLGVTRSAVSQGIRRLEDTFGTMLVMRTTRAVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +LH+  S     +     E+    V P G LRIA T    + L    +  F    P
Sbjct: 61  EAGERLHKSLSLPLTGINAAFEEIVSDPV-PRGLLRIAVTSIAEEFLSGPLIASFAAANP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +++ +++ DI     D  +RL + I+   +             A+P Y      P
Sbjct: 120 AVTLDIVVTDEEFDIVAAGYDAGVRLGEVIEKDMIAVPLTGEQREMVVASPSYFTANGLP 179

Query: 181 LSIQELDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +  ++L  H  I +     IP     F    +      EP+I     N    +++  + G
Sbjct: 180 VHPRDLVHHQCIGWRQSPDIPPYRWPFEENGSAFDLAIEPQI---TTNDLRLMLRLALTG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI L      +   ++  LV +++D +      Y  +P+      KL+A  + +    R
Sbjct: 237 GGITLATQETFRPYIESGELVSVLDDFLPKFPGFYLYFPQRRNMAPKLRALIDHV----R 292

Query: 296 DWK 298
            W+
Sbjct: 293 KWR 295


>gi|270262556|ref|ZP_06190827.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043240|gb|EFA16333.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 309

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 131/292 (44%), Gaps = 5/292 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F + A+S SFT AAEQL +++S++ + ++ LE  +G +LF+R  R L+LT  G       
Sbjct: 16  FVITAKSNSFTEAAEQLGITKSAVGKSVARLEERLGTRLFHRSTRKLSLTSDGEAYLTSC 75

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 L++ +  L      P+G +RI      G+NL+   L +    +P +++ L  ++
Sbjct: 76  LSALEILDSAENTLSRRQDNPAGTVRIDMPASFGRNLMMPVLLDITRRFPALRLALTFND 135

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + ID   +  D  +RL +   +  LI R+L    +   A P YL+    P   + L KH 
Sbjct: 136 RLIDPVEEGVDLVLRLGELQSTDELIARRLSRQRLLLCATPAYLEQHGIPTDTEMLKKHC 195

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            I            + +    +R I     +  Q++   +++  C+ G+GIA  P+ +V 
Sbjct: 196 CIM--GYRRGAPLAWRFRPADEREIRFISAAAHQISDGDAMLMACLAGAGIAQFPESMVN 253

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
              D   LV +M D       +   +P       K++   + +  KA +  F
Sbjct: 254 SHLDAGTLVTLMADHTPEPVELNVVWPRTRHLIPKVRLIVDELLRKAAEGHF 305


>gi|239501198|ref|ZP_04660508.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB900]
 gi|260555742|ref|ZP_05827962.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|332876330|ref|ZP_08444103.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|260410653|gb|EEX03951.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|332735481|gb|EGJ66535.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 326

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G
Sbjct: 6   NLSDLKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +Q
Sbjct: 66  KLILERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHVAPILSKLMMLYPKLQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I     +   D+     D  IR+   I + ++I +KL +      A+P YL     P SI
Sbjct: 126 IHFDTIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCASPSYLLKHGVPDSI 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ +T  +     +      A+ D  +          N+   I Q  + G GI  
Sbjct: 185 EDLQTHDCLTISERDQSSVLWKFRHASEDVSVHIK--PRFVSNNGEIIHQLAIEGHGIIF 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D      L  I+ +    +  V+  YP  LK++ KL+    FI
Sbjct: 243 RSIWDVADELITGQLQHILPEYWQDA-DVWAVYPSRLKSSSKLQTCILFI 291


>gi|293394686|ref|ZP_06638978.1| glycine cleavage system transcriptional activator [Serratia
           odorifera DSM 4582]
 gi|291422812|gb|EFE96049.1| glycine cleavage system transcriptional activator [Serratia
           odorifera DSM 4582]
          Length = 305

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 128/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +      L   +L   ++    +P  L       S  
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWPGLRAERLYAEYLLPVCSPSLLTGDHALKSPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +WLA   R +G   I+  Q    +    ++Q  V G G+
Sbjct: 185 DLAYHTLLH-------DTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|327193925|gb|EGE60800.1| transcriptional regulator protein, LysR family [Rhizobium etli
           CNPAF512]
          Length = 297

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 131/297 (44%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D + V   V   GS + A+  L    +++SR+IS LE  +  KL  R  R +TLTE
Sbjct: 1   MDRLDAMSVLLAVVEHGSLSAASRHLRSPLATVSRKISELEAHLHAKLLQRSNRKITLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  ++E  +         P G+L +   I  G+  +   + +FL  YP+
Sbjct: 61  AGRSYVEAAREILDRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YL     P 
Sbjct: 121 IDLRLMLGDRLSNLVEDHIDLALRIG-TLVDSNLIATRLGAIRRTVYASPDYLARNAPPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ ITF ++       F+      R +  P  S L VN+  + +   V G GI
Sbjct: 180 QPGDLSAHDCITFENMASIRSWTFS---DGKRDLAVPIRSRLAVNTAEAAVDAAVAGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y          LV ++ D   P   V+  YP       KL+A  +F   + R
Sbjct: 237 TRVLSYQAARAETAGLLVPLLSDFEPPPAPVHLVYPSQGLVPLKLRALLDFATPRLR 293


>gi|238024618|ref|YP_002908850.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879283|gb|ACR31615.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 318

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 122/293 (41%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F  V  +GSFT  A+++  + + +SR +S LE  V  +L +R  R L LT
Sbjct: 1   MDM-LENMRLFVRVVEAGSFTAVAKEIAATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +    +  +  +++    E + + +KPSG++RI     LGQ+ +   +  +    P
Sbjct: 60  ESGQRYFERSKSILAEIDHANAEARNALLKPSGRMRIHAMTGLGQSHVVPAVARYQEDNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+L L  +  ++  +  D +I     +  S  + +          A+  YL     P
Sbjct: 120 EVSIELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGESCSVLVASREYLARHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +H  +          E        D    E   S  QVN   ++     LG G
Sbjct: 180 KTPDDLPRHVCLRLDTPSSPGGEWRLESDEGDEWRFELPSSPFQVNVPDALAVALRLGRG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  +  Y   D+     LVR++ +    +  VY  Y        K + F + +
Sbjct: 240 IGSIALYTALDDLRSGRLVRVLPNYRLHTIHVYAVYATRRYLDAKTRTFLDHL 292


>gi|238760371|ref|ZP_04621512.1| Transcriptional regulator, LysR family [Yersinia aldovae ATCC
           35236]
 gi|238701431|gb|EEP94007.1| Transcriptional regulator, LysR family [Yersinia aldovae ATCC
           35236]
          Length = 306

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 130/298 (43%), Gaps = 11/298 (3%)

Query: 1   MSFDWD---KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS  +D    L  F   A+  +F+ AA QL ++ +++S+ I  LE ++ ++LF R+   +
Sbjct: 1   MSLPFDVHRLLPAFLSAAQCENFSAAARQLGVTPAAVSKNIRVLEEKLALRLFQRNTHSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT +G  L    + ++  L  T   ++    +PSG +R++     G+ LL   + EF+ 
Sbjct: 61  VLTNEGKALLARVAPLWQALSNTLDTVRSDDKQPSGTVRVSVIPGFGRQLLMPLIPEFMA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I + L L+ + +++  +  D  I  R     S LI R+   + M   A+P YL   
Sbjct: 121 RYPLIDVDLSLEARVVNLVGEGFDVGIGTRID-PDSRLIARQFYPMQMVLAASPAYLARN 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCV 236
             P + Q+L +H  +   +  P       W    +  +    +S  L  +    ++   +
Sbjct: 180 GSPSNPQDLYQHQCLLHRN--PSNGRIVKWRLQQNNEVQSLELSGRLISSQPDILLHAAL 237

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              GI  +  +       + +L+ ++         V+  Y  A     +++ + +F+ 
Sbjct: 238 ADMGITSVAQWHAASHFADGSLMPVLVSYWPAPTPVWLYYASA-NLPPRVRVWVDFLL 294


>gi|254255003|ref|ZP_04948320.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124899648|gb|EAY71491.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 318

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 125/296 (42%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L  F  V  +GS T AAE+L ++++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLATFVAVVDAGSLTAAAERLGIAKTVVSAHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    E     +   +    G LR++  +D G  ++   +      +P 
Sbjct: 66  AGRAFYDACRDIVQAAEHALDAVSSDAGPLRGTLRVSVPVDYGAQVVAPAVVALRDAHPA 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++LI +++ +D+  D  D AIR+ + +  S+    +L T      A+P ++     P 
Sbjct: 126 LHVELIANDRVVDLVADNLDVAIRIGR-LADSNYRAVQLGTYEKWLVASPAFIARHGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S   L     +    L            T         ++ +  N+  +     + G G 
Sbjct: 185 SPDALAALPFVMLSTLSRPHT--LELENTRGGHAAVRCVAAVVSNTATACRAIVLAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LL D+   D+     LVR++    T    ++  YP     + K++AF + +  + 
Sbjct: 243 GLLTDFSTADDIASGRLVRLLPAWRTAPAGIHAVYPSTRLPSLKVRAFIDAMKAQL 298


>gi|212636254|ref|YP_002312779.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212557738|gb|ACJ30192.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 300

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 13/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L++F  V + GSF+ A+ ++    S+ISR+IS LE+++  +L  R  R L LT+ 
Sbjct: 1   MDLNSLQLFVHVVQQGSFSAASRKVRTPVSTISRRISELESQLDQRLLERSTRSLDLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+   S  + ++   +I +QES    SG LRI+   ++     +  + EF   YP +
Sbjct: 61  GKTLYLFASRGFEEISAGKIAMQESQDNLSGTLRISIPPNVDAW--EPLIDEFYQRYPKV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+++I   + ID   D  D  +R+ + ++    + RKL +      A+P +++    P +
Sbjct: 119 QLEIICTTRRIDFVEDGIDVVLRVGE-LKHQLAVARKLGSYRHVLVASPEFIQRHSIPKT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +  L  F + +        W     R    P+ +C   N Y  I+     G+ + 
Sbjct: 178 PDDLTELPLAVFVNRLGNDY----WQLGDSRTAINPQFAC---NDYAPILAMVRKGNMLG 230

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LP  +V     +  LV ++ D   P+F ++  YP     +   K + +F
Sbjct: 231 ELPPTMVNKLIKSGELVELLTDYPLPAFDLHLLYPSRKYLSNIAKTYIDF 280


>gi|27367748|ref|NP_763275.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27359321|gb|AAO08265.1|AE016813_17 Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 304

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 130/295 (44%), Gaps = 10/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  SGSF+  A++L +S SS+SR I+ LE  +  KL  R  R + L+  G 
Sbjct: 10  LSEMAIFVNVVESGSFSKTAQKLGVSPSSVSRSITRLENVLEKKLLERTTRQMRLSATGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++ + S++ +  +      Q    + SG LRIA    L + +L   + +F+  +P + +
Sbjct: 70  EVYSLCSDMLNAAKMAVSAAQTDKSEASGSLRIAAPKALSRQVLMPLVLDFIAEHPKVAL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + +  ID   D  D  I++     +  L+ R L    +   A+P YL+    P    
Sbjct: 130 QLKVADHYIDPIGDEVDVIIQITDK-PTEGLVARSLGRCRLVLCASPDYLQQQGTPNHPD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN +  G+     + DF       R I         VN      +  + G GI++ 
Sbjct: 189 DLVGHNCLCLGENPRDRVWDFT---IGSRKISVNVKGSFAVNHSEIRREAVLRGLGISVF 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P++ ++   ++  L  ++ D          +   Y ++     ++K F  ++  +
Sbjct: 246 PEFAIRSYIESGALTELLSDWHLGGNYQGQILAQYAQSKYVPQQIKTFIEYLQQR 300


>gi|268593088|ref|ZP_06127309.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291311357|gb|EFE51810.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 306

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D      VF  +   GS + AAE+L +S++ ++R +S +E   G++L  R  R L+LT 
Sbjct: 1   MDRLKAAEVFITIVEQGSLSGAAEKLDMSRAMVTRYLSEMEQWAGVRLLNRTTRKLSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +++ + ++    +   ++ +  +   SG +RI+ +  + Q+ L   + EF+ LYP+
Sbjct: 61  AGEGVYQQSLQLNAISQMVPVQQELDAKALSGLVRISCSQSIAQSALSVAISEFMKLYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I + + NK +++  +  D AIR+   ++  SLI + L T H    A+P +LK  ++P 
Sbjct: 121 MAIDMQISNKSVNLIEERIDLAIRITNQLE-PSLIAKPLSTCHSVICASPDFLKGKKQPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L   + +T+                            L  N  + + +  + G+GI
Sbjct: 180 KPEDLVLLDCLTYNFFGRSLW----VFEKAGMQHSVLVDGRLSANESVFLAEATLQGAGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ P Y V ++     LV+++ +       +Y  Y    K    L+   +++
Sbjct: 236 SMQPYYSVANHLASGELVQLLPEYTPMPLGIYAVYTSRQKMPTALRVVIDYL 287


>gi|330992266|ref|ZP_08316214.1| HTH-type transcriptional activator ttdR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760465|gb|EGG76961.1| HTH-type transcriptional activator ttdR [Gluconacetobacter sp.
           SXCC-1]
          Length = 301

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 137/299 (45%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   L+ F ++A +GS    A  + +S +++SR++S +E  +G +L  R +R   LT
Sbjct: 1   MRDEISDLKFFCILAAAGSIAGCARAMGMSPAAMSRRLSAMEARLGTRLVTRTSRHFALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +LH     + H +E  + EL   + +P G LR+    +LG+ +L G +  F+  YP
Sbjct: 61  AEGQRLHEHAVRIMHDVEEAEAELTARADRPHGLLRVGVPSELGRKMLAGVVATFVEQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + LIL +  +D+  D  D AIR   P     ++   L+       A+P Y      P
Sbjct: 121 EVTVHLILSDAGLDVIDDGLDIAIRPGMP-TDQEVMTTSLLNSRRVVCASPEYCARKGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +  +L KH+ I    LI +      W+    R   E  ++  L  +S   +  + V G 
Sbjct: 180 ATPHDLLKHDCIC---LIRRQRIFNEWVYLDGRVRKEVHVTPRLATSSSEVVHDWAVSGR 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIAL   + + D+     L+  +        T++  YP       + + F +F+  + R
Sbjct: 237 GIALKVLWDIADDLKCGRLIECLSAYAWEDVTLHAVYPSRTHMPPRTRFFLDFVRRELR 295


>gi|323494612|ref|ZP_08099715.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323311045|gb|EGA64206.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 305

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 130/294 (44%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F ++   GSFT AA+ L ++ S++S+ ++ LE+ + +KLF R  R L +T  G ++
Sbjct: 12  DLASFILIVDEGSFTAAAKLLDVTPSALSKLVTRLESSLSVKLFERTTRKLIITRAGQQV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     + +  +           + +G L +A       ++LQ ++  FL  YP+IQ++L
Sbjct: 72  YDQAMVMVNAAKQAVEISTSDHQEMTGALTVAAPEAFLNSVLQPHVVPFLKKYPEIQLKL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + +ID+  D  D A +L       +L+ R++   ++   A+P Y++    P    +L
Sbjct: 132 RAADGEIDLIRDGIDVAFKLTDK-PDENLVLREVSKTNLVLCASPEYIEQRGMPTHPTQL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++H+ +   +     + DF      D     P      VN     +       GI +  D
Sbjct: 191 EQHDCLYLAETDRDHIWDF---FKEDEYHSVPVSGRYAVNHSQMRLTGVKNALGIGIFHD 247

Query: 247 YIVKDNPN---LVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +++ D      +V ++ D    S     +   YP+      +L+ F +++  + 
Sbjct: 248 FVIADAIAAKHVVPVLPDWTIKSNYHGAIAMQYPQTKYMPARLRGFIDYMTEQL 301


>gi|116252106|ref|YP_767944.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256754|emb|CAK07844.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 297

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L VF VVAR  SFT AA +  +SQS++S  +  LE  +G++L  R  R ++ TE G
Sbjct: 5   NINDLMVFLVVARERSFTKAAAKFGVSQSALSHTLRQLEQRLGVRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++ +    ++ ++ +    L     +P+G +R+       Q  +   L+ FL  YPDI+
Sbjct: 65  ERMLQSIGPLFDEIGSALDGLNILRDQPAGTVRLTAGDYQIQCYIWPKLRTFLQQYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L ++    DI  +  D  +R  + I    +  R    +     AA  Y  +   P   
Sbjct: 125 LELDVNYGLQDIVSEGYDAGVRFGEQIAKDMISVRIGPDVRFAVVAAESYFASRDIPRHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L +H  I     +P     + W    +    + R+   L  N+  ++++  + G G A
Sbjct: 185 KDLMQHRCINL--RLPTYGGLYAWEFEENGREIKVRVDGQLVFNTIYNVLEAALDGFGFA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ I K +     L R +ED        +  YP   +++       N +
Sbjct: 243 YVPEDIAKLHLGTGRLHRFLEDFSPYWEGFHLYYPSRRQSSPAFSLLVNAL 293


>gi|107026651|ref|YP_624162.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692159|ref|YP_837692.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896025|gb|ABF79189.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650159|gb|ABK10799.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 324

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 127/295 (43%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F  V  +GSF+  A+++H+S S+++R+++ +E  +G+ L +R    +TLTE G 
Sbjct: 13  LGAMRAFVRVVETGSFSAVAKEMHVSTSTVARKVTAIEEALGVALLHRSTHSVTLTEAGH 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+
Sbjct: 73  IYLERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +   D+     D  I   +     +L+  +L        A P YL  C  P +  
Sbjct: 133 DVRLTDNHNDLVAGGFDLDIHEGENYLD-NLVVHRLSRNDSILCATPGYLDRCGRPATPD 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +   +    +    L + D          L  +    +++    G GIA  
Sbjct: 192 DLTHHNCLRY---VHPEGDPRWALVSGDTQHSVLPAGNLVTDHSELLLEATCAGLGIAEF 248

Query: 245 PDYIVKD---NPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFL 292
             ++V+D   +  L  ++      +      +Y  Y    +++ KL+  ++F+  
Sbjct: 249 EIWLVRDLLASGQLEAVLPRYRLQNRLTGEYIYIAYLANRRSSAKLRVLKDFLAE 303


>gi|90419368|ref|ZP_01227278.1| putative transcriptional regulator, LysR family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336305|gb|EAS50046.1| putative transcriptional regulator, LysR family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 313

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 123/297 (41%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L  F  V R G F  A   L + +S +SR+++ LE  + ++L  R  R L+LT  G
Sbjct: 3   NLDDLFYFEAVVRHGGFAAAGRALGIPKSKLSRRVAALEQRLDVQLLERSVRRLSLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +        + E  +   Q  + +P G +R+      G++ L G L  F   YP ++
Sbjct: 63  DVFYGHCRAALAEAEAAEEAAQTLTAEPRGLVRLGCPPGFGEHALAGVLPAFFAAYPKVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++  + ID+  +  D  IR      ++S L+ RKL  I +   A+P +L        
Sbjct: 123 LQLLVSLETIDLIAERVDVVIRANLAFEENSDLVARKLGPIGIVLVASPAFLAAHSAIAR 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L     I       + +  +      DRP+       L VN +    +  + G G+A
Sbjct: 183 PEDLAGLPTIAHQKTQDQSI--WELYDGADRPVRIRHEPRLLVNDFAVSREAAIEGLGVA 240

Query: 243 LLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +LP    Y    +  LVR++ D       V+  +         ++   + +     +
Sbjct: 241 MLPQAVCYDALASGALVRVLPDYHAGESMVHLLFTSRRGMLPAVRVLVDHLIATLPE 297


>gi|258541519|ref|YP_003186952.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632597|dbj|BAH98572.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635654|dbj|BAI01623.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638709|dbj|BAI04671.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641763|dbj|BAI07718.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644818|dbj|BAI10766.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647873|dbj|BAI13814.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650926|dbj|BAI16860.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653917|dbj|BAI19844.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 307

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 134/293 (45%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D  R+F  V  + SFTHAAE L + +SS+S  +  LE+ VG +L  R  R +T T 
Sbjct: 1   MDRIDLFRIFARVVEAASFTHAAETLGMPRSSVSAAVQQLESRVGARLLTRTTRTVTPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     +   +E  +   +++     G LR+     +G+ ++   L +FL  YP 
Sbjct: 61  DGAAFYEHCLRLVADVEEAENLFRQNESAVQGVLRVNMPGRIGRLIVAPALPDFLATYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L + ++ +++  D  DC +R+  P+Q S LI R++  + +   A+P YLK    P 
Sbjct: 121 LSVELGVTDRAVNLVEDGLDCVLRVG-PLQDSGLIARRMGELELINVASPTYLKQHGTPQ 179

Query: 182 SIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              + L  H  + +       +E + W       + +     + VNS  +++   + G G
Sbjct: 180 CPTDLLKGHEAVRYASPQNGRVEQWEWEEHGHTHMLDVP-GRVTVNSAEALIACTLAGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +P Y V+       LV I+         +   YP     + +++ F  ++
Sbjct: 239 VIQIPAYDVRSYLHTGQLVEILPQWRAAPLPMALLYPHRRHLSMRVQVFATWL 291


>gi|167565953|ref|ZP_02358869.1| Transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 301

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 123/289 (42%), Gaps = 10/289 (3%)

Query: 12  YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTS 71
            VVA   SF  AA  L +S S++S  +  LE  + ++LF R  R + LTE G +  R   
Sbjct: 16  IVVADQRSFRAAARTLGVSPSALSHAMRNLEARLDVRLFNRTTRSVALTEAGEQFLRRVR 75

Query: 72  EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK 131
                LE    E   +  +PSG +RI+ + +  + L++  L  F+  YPDI ++ ++D +
Sbjct: 76  PAIADLEDAVNE-AAAHNRPSGSIRISASENAARPLIRHVLPGFVAAYPDIHVEFVVDTR 134

Query: 132 DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL 191
            +DI  +  D  IR+ + +    +  R    +   A A+P YL +   P +  +L +H  
Sbjct: 135 LVDIVANGFDAGIRVLEDVPRDMIAIRFGPDMRFAAVASPAYLAHHAPPQAPHDLMRHRC 194

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
           I F             L    +         L + +   ++   + G GIA +P+++  +
Sbjct: 195 IRFRFESGTLYRWD--LEHRGKTASIDVDGPLTLGNLNLMVDAALEGIGIAWVPEHLAAE 252

Query: 252 N---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +     LV ++ +       +   YP        L+ F        RDW
Sbjct: 253 HLALGRLVHLLPEWSPSFPGLCLYYPANRHPPTALRLF----AQAVRDW 297


>gi|260769775|ref|ZP_05878708.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260615113|gb|EEX40299.1| transcriptional regulator [Vibrio furnissii CIP 102972]
          Length = 297

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 133/299 (44%), Gaps = 13/299 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +G+FT AA+ L LS+  ++R +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFVEVANTGNFTKAADNLTLSRLQVTRHVQEIEDWLKQRLLHRTTRKVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      ++  +    +I   E S   +G +RI+  I L Q+LL   ++ F  L+P 
Sbjct: 61  AGEEALTRCEQILDQTAELEIRALEQSQSLTGSIRISAPIGLAQHLLLDTVEAFTELHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I ++  ++   +  D  D A+R  +     SLI R+L+ +     A+P YL+     +
Sbjct: 121 VTIDILASDRLSQLVDDRVDVALRFTQQ-PDESLIARRLIQVDTVVCASPQYLQTHDPII 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
              +L +HN           + +  W    D      R+S  ++ N    +    +   G
Sbjct: 180 EPADLSRHNCFVH-------LTNHTWDLVRDNQHFSVRVSGTVRANDMEILRSAALHHKG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  LP  +         LV+++ D  +PS  ++  Y      T  ++ F +F+  + +D
Sbjct: 233 VVWLPCDLANPCLRRGELVKVLADYHSPSSHLWAVYLSRSYQTPLVRQFIDFVAERWQD 291


>gi|323139163|ref|ZP_08074219.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC
           49242]
 gi|322395546|gb|EFX98091.1| transcriptional regulator, LysR family [Methylocystis sp. ATCC
           49242]
          Length = 310

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 125/298 (41%), Gaps = 6/298 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  AA  L + +S +SR++  LE  +G++L  R  R   +TE G
Sbjct: 3   DLNDLYFFVRVVDNGGFAPAARVLGVPKSRLSRRLVLLEQRLGVRLLQRSTRSFAVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R   E+    +  Q  +     +P G++R+     L    +   +  F+  YP +Q
Sbjct: 63  REYYRHCKEMLEAADAAQEAIDRFHAEPQGRVRVTCPPGLVHFRIGDLVSRFMDRYPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   ++ ID+  D  D +IR+   P++   L++R L        A+P +L     P +
Sbjct: 123 VYLKSTSRPIDVITDSIDVSIRVSTPPLEEGDLVRRILAQSPQRIVASPAFLSRFAPPQT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     I  G   P+ +  +      +  +       L  + ++ +    + G G A
Sbjct: 183 PAELSALPTIDIGP--PRSLYQWRLEGPDEETLLVSHQPRLVTDDFVQMRLAALHGIGAA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LP + V D+     LV IM      +  VY  +P        ++   +F+  +   +
Sbjct: 241 HLPAFAVDDDLATGALVEIMPQWRPRTGIVYVVFPSRRGVQPAVRGMIDFLAAEFARF 298


>gi|254240977|ref|ZP_04934299.1| hypothetical protein PA2G_01658 [Pseudomonas aeruginosa 2192]
 gi|126194355|gb|EAZ58418.1| hypothetical protein PA2G_01658 [Pseudomonas aeruginosa 2192]
          Length = 305

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 122/272 (44%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    +    +   LE     L
Sbjct: 28  RQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYRQRLERILDDLEAADAAL 87

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
                 PSG LR++  + L    L   +  FL  YPD++++L+L +   D+  +  D A+
Sbjct: 88  TSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELLLQDGRQDLIAEGIDLAL 147

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R    +  S L+ R L+ +     AAP YL    +PL  + L +H  I F          
Sbjct: 148 RGSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALREHECIRFS----LSGHA 203

Query: 205 FNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIME 260
             W     R  I  P     +V+S L++    + G G++L+P   V+       LV ++ 
Sbjct: 204 DRWTFRKGRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPRLYVQAELAEGRLVELLA 263

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D       ++  YP   +  GK + F +F+  
Sbjct: 264 DWKADETAIHAVYPS-RQLAGKTRVFLDFLTE 294


>gi|119776350|ref|YP_929090.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119768850|gb|ABM01421.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 319

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 117/293 (39%), Gaps = 6/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F  VA +GS + AA +L ++ +S S  I  LE ++G  LF R  R L L+  G + 
Sbjct: 5   DLALFVRVAEAGSISAAATELDMTPASASAAIKRLEKQLGSPLFIRTTRSLRLSHAGERY 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E    LE  ++ L        G LRI+ + D G+N+    L E +  +P +++QL
Sbjct: 65  LGHCREALSALELGRMALSSERGTVEGTLRISVSSDFGRNIFLPWLDELMEQHPGLEVQL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +K   +     D A+R   P Q S  +   L  +     A+P YL     P +  EL
Sbjct: 125 ELGDKVSSLFRSNIDVALRYGMP-QDSEAVAFSLGHLSRQLAASPRYLAREGTPTTPAEL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + +         D     + +             N      ++ V G G+     
Sbjct: 184 AAHQCLLYKRA--DKTHDLWHFFSGNEEHKVRVSGRRSCNDAEIARRWAVAGLGLVYKSR 241

Query: 247 Y-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +  D  +  LV ++ D  T    +Y   P   + T  + A R+ +  +  +
Sbjct: 242 LDLAADLLDGRLVPLLPDYGTEPLELYLLCPGRAQVTPAVLALRDMLRTRVAE 294


>gi|15597454|ref|NP_250948.1| transcriptional regulator PtxR [Pseudomonas aeruginosa PAO1]
 gi|107101704|ref|ZP_01365622.1| hypothetical protein PaerPA_01002748 [Pseudomonas aeruginosa PACS2]
 gi|254235274|ref|ZP_04928597.1| transcriptional regulator PtxR [Pseudomonas aeruginosa C3719]
 gi|313110849|ref|ZP_07796697.1| transcriptional regulator PtxR [Pseudomonas aeruginosa 39016]
 gi|17380253|sp|P72131|PTXR_PSEAE RecName: Full=HTH-type transcriptional regulator ptxR
 gi|9948285|gb|AAG05646.1|AE004651_8 transcriptional regulator PtxR [Pseudomonas aeruginosa PAO1]
 gi|13655591|gb|AAC26481.3| PtxR [Pseudomonas aeruginosa PAO1]
 gi|126167205|gb|EAZ52716.1| transcriptional regulator PtxR [Pseudomonas aeruginosa C3719]
 gi|310883199|gb|EFQ41793.1| transcriptional regulator PtxR [Pseudomonas aeruginosa 39016]
          Length = 312

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 137/294 (46%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + + L  F  VA   SFT AAE L LS+S +S Q+  LE ++GI+L  R  R +TLT+
Sbjct: 10  HLNLNHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTD 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L  V   +  +L+    ++++   +PSG+LRI    D  +  +      F+  +P 
Sbjct: 70  RGELLFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPK 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++++ D++  D+     D A+R+  P + S L   KL      A A P YL      L
Sbjct: 130 VQVEMLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPGYLAGLPPVL 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +   I    L       F      +R   + R   L  N+ L++ +  + G+G+
Sbjct: 189 QPHDLARCEWIGHTRLSTPWTWTFE--RQRERATVQTR-GRLLANNTLAVYRLVLDGAGV 245

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++LP ++V        LVR++     P   +Y  YP A     +++AF   +  
Sbjct: 246 SVLPSFLVAREIARGRLVRLLPGWRLPQGGIYALYPSARYMPVRVRAFIESLRE 299


>gi|89092210|ref|ZP_01165164.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
 gi|89083298|gb|EAR62516.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
          Length = 301

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 132/294 (44%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  +   GS + AAE+L +SQSS++R ++ LE  V  +L +R  R LTLTE+G 
Sbjct: 4   LKAMAIFVKIVDQGSLSKAAEKLGMSQSSVARSLAALEESVATQLIHRTTRKLTLTEEGI 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      ++   +E  +  L +   KP G +RI      G+  +   + EF+  YP+I++
Sbjct: 64  EFSLRCRQILADVEDAENALTQRQSKPKGLIRITAPQTFGRLHINPLISEFIHTYPEIEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L ++ +D+  +  D A+R+   +  S+LI +++  +     A+P Y+K   +     
Sbjct: 124 ELLLLDRVVDLIEEGMDIALRIGH-LPDSTLIAKQVGKVAFKVCASPSYIKQAGQAEHPT 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  +  I    L       F       +          + N   S +  C  G G    
Sbjct: 183 ELFDYECIQLTALKSHAQWGF---KEAGKHHKISISGRFKTNHVESALDACKQGLGYGQF 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y V +   +  L  ++E    P   V   YP + + + + + F ++I  + +
Sbjct: 240 LSYQVAESVHSGELKTVLESYEPPPLPVNLVYPHSRRLSSRSRTFIDWIAPRLQ 293


>gi|227329781|ref|ZP_03833805.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 305

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 6/295 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D    +RVF  +   GSF+ AAE+L L ++++S  I  LE  +G++L  R  R + +T
Sbjct: 4   AMDHIQAMRVFVRIVELGSFSRAAERLTLPRATVSNTIKQLEARLGVRLLQRTTRQVQIT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +    ++  ++E       +   +P GK+R+     L + ++   L EF   YP
Sbjct: 64  DEGRVYYERCLQLLAEIEEIDTLFTQQKQQPIGKVRVDMPHSLAREIVVPALGEFYARYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L  ++  I++  +  DC +R  +     +L  R L ++     A+  YL     P
Sbjct: 124 QVTLMLSANDAAINVLREGVDCVLRAWQ-TDDETLATRHLPSMPQVTCASADYLARYGVP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL  H ++ +  L  +         + D  I       LQVN   + +     G G
Sbjct: 183 RSLDELSGHQMVGYFSLRTEYRYPLE-FMSGDECITRMLPGALQVNGTDAYIASARAGLG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I   P   ++   ++  LV I+ ++  P   +Y  Y        +++ F  ++  
Sbjct: 242 IIQAPRRGLRPFLESGELVEILPEMPPPEMPLYVMYAPGRFLAPRIRVFIEWLDE 296


>gi|83645276|ref|YP_433711.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83633319|gb|ABC29286.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 320

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 131/297 (44%), Gaps = 15/297 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  VA + S T A++ L +S+ +ISR+I  LE  +G+ L  R  R   LT  
Sbjct: 1   MDLNSMCIFTKVAETKSITSASQMLGISKQTISRKIIQLEESLGVCLIRRTTRNFELTTA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDL-GQNLLQGNLKEFLLLYPD 121
           G    +  + +  + E     ++     P G+++++  +     N +      FL   P 
Sbjct: 61  GQAYFQYCTCIVQQAEEANAMVKSLQSTPVGEIKVSMPLAFNNNNAMSKLFTNFLKKTPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I + L N+   +  +  D A RL  P+  S++I R L  +     A+P Y++    P 
Sbjct: 121 VKIDIHLSNRRTCLISEGIDMAFRLG-PLVDSTMIARGLGVLTFTYVASPEYVEMNGLPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  ++  H +I   D   K ++DF         I E     +Q+N +    Q  + G GI
Sbjct: 180 TPNDVINHTIIAMHDC--KLLDDFR--------INEKIGDRVQINDFSLAKQMAMDGFGI 229

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+LP ++  D      L  I ++   P+  +   Y ++      ++ F N +  + R
Sbjct: 230 AVLPVFMCVDEIREGILTPIQKECFQPTRHLNLVYTQSRHQPAHVRKFINHVVEETR 286


>gi|320158027|ref|YP_004190405.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
 gi|319933339|gb|ADV88202.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
          Length = 304

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 130/295 (44%), Gaps = 10/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  SGSF+  A++L +S SS+SR I+ LE  +  KL  R  R + L+  G 
Sbjct: 10  LSEMAIFVNVVESGSFSKTAQKLGVSPSSVSRSITRLENVLEKKLLERTTRQMRLSATGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++ + S++ +  +      Q    + SG LRIA    L + +L   + +F+  +P + +
Sbjct: 70  EVYSLCSDMLNAAKMAVSAAQTDKSEASGSLRIAAPKALSRQVLMPLVLDFIAEHPKVAL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + +  ID   D  D  I++     +  L+ R L    +   A+P YL+    P    
Sbjct: 130 QLKVADHYIDPIGDEVDVIIQITDK-PTEGLVARSLGRCRLVLCASPDYLQQQGTPNHPD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN +  G+     + DF       R I         VN      +  + G GI++ 
Sbjct: 189 DLVGHNCLCLGENPRDRVWDFT---IGSRKISVNVKGSFAVNHSEIRREAVLRGLGISVF 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P++ ++   ++  L  ++ D          +   Y ++     ++K F  ++  +
Sbjct: 246 PEFAIRPYIESGALTELLSDWHLGGNYQGQILAQYAQSKYVPQQIKTFIEYLQQR 300


>gi|170724877|ref|YP_001758903.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810224|gb|ACA84808.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 301

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 127/297 (42%), Gaps = 6/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L++F  VA  GS T AA +L +S +S S  +  LE ++   LF R  R L LT+ 
Sbjct: 1   MQINDLKLFVRVADCGSITAAATELDISPASASAALKRLEKQLETSLFIRSTRSLRLTDT 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    L   Q  + +   K SG +++A   D+G+N+L   L  F+  YP++
Sbjct: 61  GERYLIHCRKALADLTLGQQAIDDVKEKISGVVKLALPSDVGRNVLLPWLDSFMDEYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++ + +   D   D  D A+R   P + SSL+  K+ +      A+P Y+    +  S
Sbjct: 121 KLKVHIGDTLSDFYHDKIDMALRSGTP-RDSSLVAFKICSASRVLCASPDYIAKWGKVES 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +L  HN + F  ++ +   D        R            N      ++ V G GI 
Sbjct: 180 IDQLADHNCLFF--MLDERTHDQWSFTQQGRQFKVRVTGNRSCNDADITRRWAVAGKGIV 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                 + ++    NLV ++ D    +  +Y   P     T  +   R+ +  + + 
Sbjct: 238 YKSSLDLGEDIAKGNLVPMLTDYQGEAADLYLVCPGREHVTPVMLLLRDMLRQRCKQ 294


>gi|254240698|ref|ZP_04934020.1| transcriptional regulator PtxR [Pseudomonas aeruginosa 2192]
 gi|126194076|gb|EAZ58139.1| transcriptional regulator PtxR [Pseudomonas aeruginosa 2192]
          Length = 312

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 137/294 (46%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + + L  F  VA   SFT AAE L LS+S +S Q+  LE ++GI+L  R  R +TLT+
Sbjct: 10  HLNLNHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTD 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L  V   +  +L+    ++++   +PSG+LRI    D  +  +      F+  +P 
Sbjct: 70  RGELLFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPK 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++++ D++  D+     D A+R+  P + S L   KL      A A P YL      L
Sbjct: 130 VQVEMLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPGYLAGLPPVL 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +   I    L       F      +R   + R   L  N+ L++ +  + G+G+
Sbjct: 189 QPHDLARCEWIGHTRLSTPWTWTFE--RQRERATVQTR-GRLLANNTLAVYRLVLDGAGV 245

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++LP ++V        LVR++     P   +Y  YP A     +++AF   +  
Sbjct: 246 SVLPSFLVAREIARGRLVRLLPGWHLPQGGIYALYPSARYMPVRVRAFIESLRE 299


>gi|15595379|ref|NP_248871.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|254243290|ref|ZP_04936612.1| hypothetical protein PA2G_04098 [Pseudomonas aeruginosa 2192]
 gi|9946015|gb|AAG03571.1|AE004456_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126196668|gb|EAZ60731.1| hypothetical protein PA2G_04098 [Pseudomonas aeruginosa 2192]
          Length = 310

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 122/299 (40%), Gaps = 4/299 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               ++ F   A +GSF  AA +L L+ + + + ++ LE+ +G++LF R  R LTLTE G
Sbjct: 3   TLSNIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +        ++T    +     +PSG L+++  +  G++ +   L EFL  YPDI 
Sbjct: 63  ERFLQEVGGSLEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+  +  D AI     +    ++ R L   H+   A+P YL++       
Sbjct: 123 PDWHFDNRQVDLIGEGFDAAIGGGFELP-PGVVARNLTPGHLILLASPTYLRDKPPIRHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I         +  +                 + ++   +  +   +G GI L
Sbjct: 182 GDLGGFDGIRIRSPQTGRVRSWPLRRRNGEEAPIELRERMTMSDPEATCEVAAMGLGITL 241

Query: 244 L---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +     Y   ++  LVR++ D    +      Y        K + F +F+    R    
Sbjct: 242 VCMQHAYAYLESGALVRVLPDWYVDAGNTSLYYAANKLLPAKTRVFVDFVVDYFRRQDL 300


>gi|319424784|gb|ADV52858.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 323

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 138/288 (47%), Gaps = 10/288 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    + VF  +A  GS + AA+QL+LS S++S+Q++ LE ++GI LF+R+ R LTL
Sbjct: 1   MNKNMIKGMIVFATIAEKGSMSAAAQQLNLSSSAVSQQVTKLEMDMGISLFHRNTRNLTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE GS  +    +V   +++T+ +L      PSG+L+IA  +  G  LL    +  L  +
Sbjct: 61  TEAGSLFYENCRKVISIVDSTEQKLNNLKGIPSGELKIAAPVGFGGGLLSEPFQYLLATH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + L++ +  IDI  D  D AI +  P+  S+LI R L    M    +P YL     
Sbjct: 121 PQISLNLVMQDGPIDIVNDGIDLAICIG-PLSDSNLIARHLADWRMLLCTSPDYLPMHHN 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                EL   N I       + +     L   +          + VN+  +++Q  + G 
Sbjct: 180 IKHPSELAVFNRINHNYTKGELLTHHPSLECFELTG-----QRISVNNMQTLIQLTLDGL 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G A LP+  V D      LV ++ +    +++VY       +   K+K
Sbjct: 235 GYAALPEPEVLDYLDKGVLVPLLPEWSFNTYSVYSVTSARDRQPAKVK 282


>gi|295681353|ref|YP_003609927.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295441248|gb|ADG20416.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 323

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 4/296 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   A+  SF+ AA +L L+ +++SR ++ LE  +G++L  R  R +TLTE G
Sbjct: 3   TLANLESFVKSAQLQSFSEAARRLGLTPAAVSRNVAMLERNLGVRLLQRSTRRITLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +           L++   E    + +P+G L+++ +  LG   +   L EFL  YP ++
Sbjct: 63  ERFLDSIGASLDSLQSAIEETSSGAAEPAGVLKVSLSPTLGPAYILPLLPEFLRRYPRVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +   + + +D+  +  D AI     +    ++ R L   H+ A A+P YL++   P   
Sbjct: 123 PEWHFEIRQVDLVREGYDLAIGGGFELT-PGVVSRALAPAHIVAVASPGYLRDVALPSHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL     +    +    +  +  L              + +N   S+ +   LG G+A+
Sbjct: 182 DELRNLRGVVMRGMATGRIRKWTMLGPNGEEAAAAINEDIVMNDPASMREAARLGLGVAM 241

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L    V  +     LVR++ +  + + T+   Y        K + F  F+    R 
Sbjct: 242 LALPDVLPDLADRKLVRLLPNWHSDAGTISLYYASRRLLPAKTRVFIEFVIENFRQ 297


>gi|13470844|ref|NP_102413.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14021587|dbj|BAB48199.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 311

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 121/292 (41%), Gaps = 5/292 (1%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    L V   VAR G F  AA +L +S S++S  +  +E  +G  LF R  R ++L
Sbjct: 1   MDRDLLTHLPVIVAVARRGGFALAAAELGMSPSAVSHAVRLVEERIGQPLFARTTRSVSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G  L    +     +     +++    +PSG LRI  +       +   +      Y
Sbjct: 61  TEAGKALVETAAPALQDIGERIDQIRSVKGRPSGLLRINASTIAIPLAVTPVVAAMAERY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ +++  D   +DI  +  D  IRL + I    +  R          A+P Y+     
Sbjct: 121 PDVTVEIFADQGLVDIVGEGFDAGIRLGEMIAQDMVAVRLTPPFRTIIVASPAYIGRHGR 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+ +L  HN I +  +    +  ++ LA   + +         V   L+ +   + G 
Sbjct: 181 PRSVADLANHNCIGYRLIRSGALYRWD-LAEDGKDVIMETGGTAIVTDSLAAIDLALAGV 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A + + + + +     LV+++         ++  +P       KL+AF +
Sbjct: 240 GLAYMFEPLARADLAAGRLVQVLPQSAIEEPGLFLYFPRRAAMAPKLRAFID 291


>gi|116252105|ref|YP_767943.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256753|emb|CAK07843.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 301

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 131/297 (44%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D ++VF     +G F  AAE+L L++S++ + I+ LE  +G++LF+R  R  +LT
Sbjct: 1   MRDRFDGVQVFVEAVETGGFAKAAERLSLTRSAVGKAIARLEERLGVRLFHRTTRTQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +        +L   +  L+    +  GKLR++  +  G+      L+ +   + 
Sbjct: 61  EDGQQYYERCVRAIEELRAGESLLESGRREVVGKLRVSLPVLFGRYCAAPILRAYARQHE 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ ID+  D  D A+R       ++L  R+LV+      A+P YL    EP
Sbjct: 121 RLELELSFSDRQIDLIADGFDLAVRNGVLGNGTALHARRLVSPRKALCASPAYLAARGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L +H+ + +          +         I     S L+ +    I    V G G
Sbjct: 181 HSLADLPEHDTLVY--WRNDYGLTWQLPDATGALIDLSVTSRLRFDDLEVIADAAVDGMG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A LP +++ D      LV +  D    +   Y  +P       + +   + +  + 
Sbjct: 239 LAWLPYWLIHDRVQAGELVELWTDRPRAAMECYAVWPTTQYLPLRSRLAIDALATEL 295


>gi|33594412|ref|NP_882056.1| LysR family regulatory protein [Bordetella pertussis Tohama I]
 gi|33564487|emb|CAE43800.1| LysR family regulatory protein [Bordetella pertussis Tohama I]
 gi|332383823|gb|AEE68670.1| LysR family regulatory protein [Bordetella pertussis CS]
          Length = 302

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 133/292 (45%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D+ RVF  VA  GSF  AA  L L ++S+S  +  LE +VG +L +R  R + LT 
Sbjct: 1   MDRFDQYRVFAQVAEMGSFIKAAHTLELPRASVSAAVQQLEGQVGARLLHRTTRQVRLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L      +  ++E      Q S  + +G+L I     + + L+   L   L  +P 
Sbjct: 61  DGTQLLERIRPLLAEVEDIDQLFQASQRQAAGRLNIDVPSRIARRLVAPALPALLRRHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCA+R+   + SSSL+ R L ++ +   A+P YL+   EP 
Sbjct: 121 LQLALGSGDRAIDLVREGVDCAVRIG-VLHSSSLVVRPLGSLALINCASPAYLREHGEPG 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              EL   H  + +          +               S + VN+  S +  C+ G G
Sbjct: 180 HPDELAAGHWTVGYASPQTGRALPWECATPRGGTNLVEAASRVVVNNAESYIACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +P Y V+   D   LV +M D    S  V   YP   + + +L  F  +
Sbjct: 240 LIQIPRYDVQHLLDGGQLVEVMPDRRAASMPVALLYPHRRQRSRRLAVFLEW 291


>gi|238751465|ref|ZP_04612957.1| Glycine cleavage system transcriptional activator [Yersinia rohdei
           ATCC 43380]
 gi|238710332|gb|EEQ02558.1| Glycine cleavage system transcriptional activator [Yersinia rohdei
           ATCC 43380]
          Length = 305

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFTSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNAAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +    + L   +L    +    AP  L          
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLLMGEHGLKVPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +WLA   R +G P+I+  Q    +    ++Q  V G GI
Sbjct: 185 DLANHTLLH-------DTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|264678709|ref|YP_003278616.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262209222|gb|ACY33320.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 313

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 138/291 (47%), Gaps = 5/291 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  +AR  SFT AA ++ ++++++S+ + GLE  + ++L  R  R ++LTE+G +L 
Sbjct: 11  LTWFAHIARHRSFTKAAAEMEVTRAALSQHLKGLEQHLNVRLLNRTTRDMSLTEEGQRLL 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V       +E    E+ E+  +P+G +R+ ++    + L++ ++ EFL  YP ++++L+
Sbjct: 71  DVLQPALTAIERAVAEIGEAHAEPTGLIRMNSSRVAARLLIEPHMGEFLARYPKLRLELV 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+   +I  +  D  IRL + +    +       + M    +P Y +    P +  +L 
Sbjct: 131 MDDGFSNIVAEGLDAGIRLGESLDEHMVAVPITPPLEMAIVGSPEYFERYGMPETPADLM 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           KHN + +       ++ +++ +  +  R +          N   S++   + G G+    
Sbjct: 191 KHNCLAYRFTSSGTIDRWSFTSPDEEKRTVVFEPQGNAVFNDDDSMLHGALQGVGLVQHI 250

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           D  V+    + +LVR++     P    Y   P   +   K +A  +F+  +
Sbjct: 251 DLCVRRHLADGSLVRVLAAWCPPFPGFYLYVPSRSQMPAKTRALMDFLVEQ 301


>gi|152970311|ref|YP_001335420.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330008448|ref|ZP_08306258.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150955160|gb|ABR77190.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328535114|gb|EGF61625.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 298

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 130/295 (44%), Gaps = 10/295 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  + ++ +++F  +  +GSF  AAE L + + ++++ +  LE E G++L  R  R L L
Sbjct: 1   MQMNLFENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G + +R +  +  + +              G+LR+   I   + L+  +L +F   +
Sbjct: 61  TPEGEEFYRRSKPLLSQADDLLESF-APDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAH 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+++I L   +   D+  D  DC +R+   ++    + R L  + +   A+P YL     
Sbjct: 120 PEVEIVLSSSDVRRDMLRDGLDCLLRVGD-LEDGDYVARSLGEVALTTCASPGYLARYGA 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P ++++L  H  +    +     +   W       I +  I   L +++        + G
Sbjct: 179 PATLEDLQSH--LAVNWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDNSEVFTAAGLAG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+     + ++   D+  LV ++ D   P   +   YP     + K++ F +++
Sbjct: 237 LGMLQGMRFFLQPYIDSGQLVEVLPDFPAPRRPLSLLYPH-RHLSHKVRVFADWL 290


>gi|107101390|ref|ZP_01365308.1| hypothetical protein PaerPA_01002427 [Pseudomonas aeruginosa PACS2]
 gi|254235047|ref|ZP_04928370.1| hypothetical protein PACG_00927 [Pseudomonas aeruginosa C3719]
 gi|126166978|gb|EAZ52489.1| hypothetical protein PACG_00927 [Pseudomonas aeruginosa C3719]
          Length = 311

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 133/299 (44%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E  +  + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +   R 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAG-RH 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               ++L+    +  G +          +          R   L V+ ++   +  V G 
Sbjct: 180 LEHPEDLEDLPFL--GAIHNDRKVHATLIGPDGSRYQLEREPRLGVDDFVLRKKAAVAGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ LLP+        + +LVRI+     P  T+   Y         ++A  +F+    +
Sbjct: 238 GVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAYLPRSSQIPAIRALIDFLVEALQ 296


>gi|260553990|ref|ZP_05826255.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260404876|gb|EEW98381.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 326

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 131/290 (45%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G
Sbjct: 6   NLSDLKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +Q
Sbjct: 66  KLILERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHIAPILSKLMMLYPKLQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I     +   D+     D  IR+   I + ++I +KL +      AAP YL     P SI
Sbjct: 126 IHFDTIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCAAPSYLLKHGVPDSI 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ +T  +     +      A+ D  +          N+   I Q  + G GI  
Sbjct: 185 EDLQTHDCLTISERDQSSVLWKFRHASEDVSVHIK--PRFVSNNGEIIHQLAIEGHGIIF 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D      L  I+ +    +  V+  YP  LK++ KL+    FI
Sbjct: 243 RSIWDVADELITGQLQHILPEYWQDA-DVWAVYPSRLKSSSKLQTCILFI 291


>gi|296135734|ref|YP_003642976.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
 gi|295795856|gb|ADG30646.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
          Length = 302

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 121/294 (41%), Gaps = 5/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L L +S +SR+++ LET++G +L  R  R   +TE G
Sbjct: 3   DLNDLYYFVQVVEHGGFAPAGRALGLPKSKLSRRLARLETQLGARLIQRSTRSFVVTELG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  +  +  +  +P G +R+   + L    + G +  FL+ YP +Q
Sbjct: 63  QTYYTHCKAMLVEADAAEEAIARTHAEPCGAVRLTCPVALLDAQVGGMVAAFLVRYPQVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D A+R+R  P+  S L+ R L        A+P  L     P +
Sbjct: 123 LQLDATNRRVDVVAEGIDVALRVRPPPLDDSDLVLRTLAERVQVLVASPALLARTHMPQT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L     +     +    + ++                L  +S  ++ +  V G+GI 
Sbjct: 183 PASLSGLPSLALSSQL-GITQTWDLHGPEGAQAAVRHQPRLVSSSMPALREAAVAGAGIV 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V+    +  L  ++         ++  +         ++A  +F+  +
Sbjct: 242 QLPLMMVQAQLASGQLTHVLPSWAPRPEIIHAVFASRRGLLPAVRALLDFLAEQ 295


>gi|56710248|dbj|BAD80971.1| LysR family of transcriptional regulator [uncultured bacterium]
          Length = 312

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 133/297 (44%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LRVF  VA +GSFT AA+ L  S + +SR ++ LE  V  +L  R  R L+LT
Sbjct: 1   MDL-LNSLRVFVRVADAGSFTTAAQALDFSTAQVSRLVADLEQHVQARLLQRTTRRLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++   +     E + + ++P+G+LR+     LG  L+   +  +  LYP
Sbjct: 60  EAGERFLLRARQILDDMAEATAEARGAHLEPNGRLRLHCLTGLGV-LMTPLIARYCELYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L  ++ D   D  D  I +   +  S  + + +  I     A+P Y+     P
Sbjct: 119 DVVVELTLSQRNPDPLEDGHDVVISIAHELADSQFVAQTVGCIFSMPCASPAYIARRGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L++H  +   D  P   +++ +          P     Q N   +++     G G
Sbjct: 179 TRPEQLNEHCCLRMID--PLYGDEWVFRDEQGEHCVVPG-KTFQSNVPEAMVNASEAGMG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I+LLP Y    +     L+R++ +       VY  YP       K++ + +F+  + 
Sbjct: 236 ISLLPFYTATRSLREGTLLRLLGNHRLRERNVYALYPSKRFLDAKVRTWVDFLKAEL 292


>gi|28900220|ref|NP_799875.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260361655|ref|ZP_05774682.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260880782|ref|ZP_05893137.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260896508|ref|ZP_05905004.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|28808531|dbj|BAC61708.1| putative transcriptional regulator protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308089249|gb|EFO38944.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092598|gb|EFO42293.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308112751|gb|EFO50291.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 293

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L++F  V + GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT +
Sbjct: 1   MKIDDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNK 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L++   +    S++  GK+++    +  ++ LQ  L EF   YP +
Sbjct: 61  GDAYYQDLQKVLTLLDSANQQASNESIEVRGKIKLGLLPETYEH-LQPILFEFQDQYPQV 119

Query: 123 QIQLI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +  ++N  ID+     D A+     +  S ++ RK++T+     A+P+YL+    P 
Sbjct: 120 ELDIRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPA 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++EL  H  I F    P    D  W         +P+   L  N+   I    VL  GI
Sbjct: 179 TLEELSDHQCICF--RWPNGNVDNLWHFQEQNVALKPK---LISNNIGFIKSSTVLDRGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +P  +VK   ++  LV+++        T +  YP+        +     +
Sbjct: 234 SYIPKLLVKNELESGALVQVLSQYAVTEETGWLLYPQPKTLNQASRLLIEHL 285


>gi|330502513|ref|YP_004379382.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328916799|gb|AEB57630.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 307

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 121/294 (41%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V  +G F  AA++   S SS+S  I  LE E+G++L  R  RGLT TE G
Sbjct: 5   NLSDIALFAAVVEAGGFRAAAQRRGTSASSLSDCIRRLEKELGVRLLNRTTRGLTPTEIG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L +       ++ T   +LQE    P G LR+     + +++L   L  FL  YP I 
Sbjct: 65  ARLLQRLRPALDEINTALNDLQEDPEHPVGSLRLHVPGVIARHVLPALLDGFLARYPGIA 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH--MHAYAAPHYLKNCREPL 181
           +++ +DN  ID+     D  IR  + +    +I   +        A AAP YL+    P 
Sbjct: 125 LEVNMDNTFIDVIGAGYDAGIRYEESLAKD-MIAIPIGPRRQCFMAVAAPSYLQRHGTPQ 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL++H L+ +     K            R +       L  +S   ++     G GI
Sbjct: 184 HPGELNEHRLLGYRFASGKLGVWE--FEQDGRTLRIAPEGRLVSSSQDLLIAAACAGHGI 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               +  +  +     L  I+ D        Y  Y         L+AF +++  
Sbjct: 242 LYTFEEYIAAHLASGQLQPILHDWWQHFEGPYLYYHSRRNVPAPLRAFVDYVKA 295


>gi|121593069|ref|YP_984965.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120605149|gb|ABM40889.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 300

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 132/290 (45%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR F  VA + SFT AAE+LH+++  +S QI  LE  +G  LF+R  R +TLT+ G
Sbjct: 7   DLNLLRAFLAVADARSFTAAAERLHIARPQVSLQIRRLENVLGAALFHRTTRTVTLTDAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L   ++ +   LE              G+LR++  ++    ++   + EF + +P++ 
Sbjct: 67  QRLFEESAPLMQGLEQVLQHAGSRGSGLRGRLRVSAPVEYAVQVMSPVVAEFAVRHPEVS 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++ +K  D+  +  D +IR+     SS+ +  KL        A+P Y   C  P + 
Sbjct: 127 LELVVSDKVQDLVGEGIDVSIRVGWLRNSSARVA-KLGEFGQAVLASPEYRARCPRPEAP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I    L       F       + I       L+ +S +++    + G+G+++
Sbjct: 186 EDLAHHRWIALTLLPAPLTWSFT---NGTKDITVRMAPKLRTDSAVALRALLLNGAGVSV 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                ++ +     LVR++ +       VY  YP         +AF   +
Sbjct: 243 GSLLHLESDIRSGTLVRLLPEWTLRKGGVYAVYPPGTAIAPAARAFVELL 292


>gi|206563042|ref|YP_002233805.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039082|emb|CAR55045.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 324

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 125/295 (42%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F  V  +GSF+  A+++H+S S+++R+++ +E  +G+ L +R    +TLTE G 
Sbjct: 13  LGAMRAFVRVVETGSFSAVAKEMHVSTSTVARKVTAIEEALGVALLHRSTHSVTLTEAGH 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+
Sbjct: 73  IYLERAVTLIADLDDTLRVVAELNARPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +   D+     D  I   +     +L+  +L        A P YL  C  P +  
Sbjct: 133 DVRLTDNHNDLVAGGFDLDIHEGENYLD-NLVVHRLSRNDSILCATPAYLDRCGRPATPD 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +         D   L + D          L  +    ++     G GIA  
Sbjct: 192 DLKHHNCLRYVHPEGDPRWD---LVSGDAHHSVLPAGNLVTDHSELLLDATCAGLGIAEF 248

Query: 245 PDYIVKD---NPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFL 292
             ++V+D   +  L  ++      +      +Y  Y    +++ KL+  ++F+  
Sbjct: 249 EIWLVRDLLASGQLEAVLPRYRLQNRLTGEFIYIAYLANRRSSAKLRVLKDFLAE 303


>gi|145299637|ref|YP_001142478.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852409|gb|ABO90730.1| transcriptional regulator, LysR-family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 300

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 129/298 (43%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L +F  V  +GSF  AAE L +  S +SR I  LE ++   L  R  R ++LT
Sbjct: 1   MKTHSDELTLFVAVVEAGSFRQAAENLGMDNSVVSRGIKRLEEKLATLLLNRTTRRVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+GS  ++    +  ++   +  L     +P G LR+        + L   + EF   YP
Sbjct: 61  EEGSWFYQRAVNILTEMSEAEGHLLMRKEQPEGILRVDAATPFILHRLVPIIGEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++QL      I++     D AIR+ + +  SSL    L    +   A+P YL     P
Sbjct: 121 AIELQLHSSEGFINLMERRVDMAIRIGE-LTDSSLRALPLGRSRLRLLASPAYLNERGTP 179

Query: 181 LSIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               + L  H L+ F  L P  +  +  L + ++         L+ +S  ++ Q  + G 
Sbjct: 180 RQPADLLAGHELLGF--LHPDHLNHWP-LLSAEQGDRFAITPTLRASSGETLRQLALAGQ 236

Query: 240 GIALLPDYIV---KDNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  L D++    + +  LV ++       S  V   +    +   +L+ + +FI  +
Sbjct: 237 GIVCLSDFMTGPDRASGALVEVLARSNSGASRPVNAVFYSDAQRDIRLRVWLDFIKEQ 294


>gi|89073223|ref|ZP_01159753.1| putative transcriptional regulator [Photobacterium sp. SKA34]
 gi|89050933|gb|EAR56397.1| putative transcriptional regulator [Photobacterium sp. SKA34]
          Length = 294

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T A+ +  +  ++++R+I  LE  + I+L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRMVVENGSYTAASRKTQVPVATLTRRIQALEEGLNIRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K +   + +  +L  T   + E     +GKLRIA   ++ + +LQ  L  F+L +P I
Sbjct: 61  GQKFYHDCAPLLQQLLDTTEHISEECKGAAGKLRIAAPTNITKVMLQPLLNAFMLEHPAI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL + N+   +     D   R+  P + S+LI R++  +     A+P YLK   EP  
Sbjct: 121 SIQLYMSNEPDQLDPTDWDVMFRIG-PQRDSTLIARRINEVKDILVASPEYLKKNPEPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H L+    L+   + + N        +        + +    + + C  G GI 
Sbjct: 180 AQDLHDHVLLKGNPLLRWRLNNHN-----GETVTINERGRFEASELNVVRKACCAGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L+PD +++    +  + +++++       VY  Y        KL+ F +F
Sbjct: 235 LMPDVMLEKYIADGEVTQVLKNWSANPRDVYLIYNHRDYQPEKLRLFIDF 284


>gi|170690406|ref|ZP_02881573.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170144841|gb|EDT13002.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 293

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 136/298 (45%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D+L  F+ V  +  F+ AA ++  SQS+IS+ ++ LE  +G+ L  R  R +TLT+
Sbjct: 1   MDRFDELNAFFAVVEASGFSAAARRIGESQSAISKAVNALEKRLGVALLRRSTRKVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG   +     +  +++    EL  ++++ SG +RIA     G+  +   +   L  +P 
Sbjct: 61  QGRLYYDRMRPLVDEIQVADSELTSTTLEVSGLIRIAAPSTFGRLHVLPLIPGLLARHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I ++L +   D+  D  D AIR+  P++    + R++    +    +  Y +    P 
Sbjct: 121 LRIDMVLSDAVRDMVEDRIDLAIRVS-PVEEPDSVVRRVAATSLVCAGSRRYFEQHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  HN + + ++           A    P   P    L  NS  +I+   + G GI
Sbjct: 180 TPADLADHNCLVYREMTDWP------FAGPQGPFNLPVRGNLSSNSVETILAGVLAGVGI 233

Query: 242 ALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +     +V +    ++V +++D +     V   +P+      ++++  +F+     +
Sbjct: 234 GMFHRASLVGEFQQSDIVTVLDDFVQQPREVSLIWPKRRFVPTRVRSATDFLAGALAE 291


>gi|220915073|ref|YP_002490381.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
 gi|219952824|gb|ACL63214.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 301

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 126/297 (42%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA  G F+ A+  L   +S++SR+I+ LE ++G++L  R      LTE G
Sbjct: 3   NLTDLYYFAKVAEHGGFSAASRVLDQPKSTLSRRIAALERDLGVRLIQRTNNRFALTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S        +  + +  Q  ++    +P+G LR++  I L Q  +   +  F++ +P + 
Sbjct: 63  SAYVAHCQAMIAEAQAAQQVVENWRAEPTGTLRVSCPIALAQARVSEIVARFMIAHPGVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ I  N+ +D+  +  D A+R+R  P++ S L+ R L         AP  L     P +
Sbjct: 123 VRFIATNRTVDLIEEGIDVALRVRFPPLEESDLVMRVLSDSTQAIVGAPALLDRLGRPSA 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L   + +         +  ++      R +  P    L  +  L++ Q    G G+ 
Sbjct: 183 PEALAGMDALDLIRQDRNHV--WHLTHQDGRSVAIPFAPRLVSDDMLTLRQAAREGVGVV 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP Y+V+   D  +L  ++      S  ++   P         + F + +    R 
Sbjct: 241 RLPTYLVQAALDKGDLEAVLPAWTPRSGIIHAVLPSRRGLARATRLFVDSLVEGFRQ 297


>gi|78065735|ref|YP_368504.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966480|gb|ABB07860.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 305

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 119/297 (40%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L  R  R  T+T+ G
Sbjct: 7   DLNDLYYFVQVVEHGGFAPAGRALDMPKSKLSRRIALLEARLGMRLIQRSTRRFTVTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +     +P G +R++  I L  +L+   +  F++  P ++
Sbjct: 67  QTYYAHCRAMLVEADAADEAIALLHEEPRGIVRVSCPIVLLDSLVGTMIAAFMVACPRVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S L  R L        A+P  L+    P  
Sbjct: 127 IHLEATNRRVDVVGEGIDVAIRVRPPPLEDSDLALRMLAERGQCLVASPSLLREHGAPAV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +    +     P+    +                       L++    V G GI 
Sbjct: 187 PADLARLP--SLDHGAPQSAHVWRLRGPDGAHAEIHHQPRFVTGGMLALRAAAVAGVGIV 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +V+D      LV ++ D       V+  +         ++A  +F+  +  +
Sbjct: 245 QLPTMMVRDEVARGELVTVLPDWAPRREIVHAVFASRRGLLPSVRALLDFLAERFAE 301


>gi|54303319|ref|YP_133312.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46916749|emb|CAG23512.1| Putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 297

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 128/300 (42%), Gaps = 15/300 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L +   V  SG F+ AAE L +  + +SR +S +E ++G+ +  R  R + LT
Sbjct: 5   MQTRSDDLEILLTVVDSGGFSAAAEALDIQVARVSRAVSKVEKQLGVSILNRTTRRVELT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +           ++  + EL      P G+LR+        + L   +K F  +YP
Sbjct: 65  DEGRQFVEAIRVGLLHIQQAEEELISRGELPKGRLRVDAASPFVFHQLVPLIKPFHEVYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  +   +D+     D AIR+ K +  S+L  R L    +   A+P YL     P
Sbjct: 125 DIKLELTSNEGFVDLLEKKTDVAIRIGK-LTDSTLHARPLGKSLLFIVASPEYLSRRGFP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H++I F                ++             ++  ++ +  + G+G
Sbjct: 184 QYSSDLSSHDIIGFAGAKVLNSWPLKGFKALE--------PTFTSSNGETVRELALAGNG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L  ++VK   +   LV ++E      T    +   + ++     ++ AF +FI  K 
Sbjct: 236 IACLSGFMVKKDIEEGRLVPLLEPEKLSNTDREQINAVFYKSSSVAKRISAFIDFIQPKL 295


>gi|254252815|ref|ZP_04946133.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124895424|gb|EAY69304.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 305

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 121/297 (40%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L++ +S +SR+I+ LE  +G++L  R  R  T+T+ G
Sbjct: 7   DLNDLYYFVQVVEHGGFAPAGRALNMPKSKLSRRIALLEARLGMRLIQRSTRRFTVTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +     +P G +R++  I L  +L+   +  F+   P ++
Sbjct: 67  QTYYAHCRAMLVEADAADEAVALMHEEPRGIVRVSCPIVLLDSLVGAMIAAFMAACPRVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D A+R+R  P++ S L  R L        A+P  L+    P+ 
Sbjct: 127 IHLEATNRRVDVVGEGIDVALRVRPPPLEDSDLALRVLAERGQCLVASPALLREHGVPVV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +    +    +P+    +                 L     L++    + G G+ 
Sbjct: 187 PADLVRLP--SLDHGMPQAAHVWRLRGPDGAQAEIHHQPRLVTGGMLALRAAAIAGVGVV 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +V+D      L  ++ D       V+  +         ++A  +F+  +  +
Sbjct: 245 QLPTMMVRDEIARGELTTVLPDWAPRREIVHAVFASRRGLLPAVRALLDFLAERFAE 301


>gi|116049688|ref|YP_791507.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389876|ref|ZP_06879351.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313110426|ref|ZP_07796311.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|115584909|gb|ABJ10924.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310882813|gb|EFQ41407.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 304

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 113/291 (38%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +AR  SF  AA  L ++  ++S  +  LET++GI+L  R  R ++ TE G
Sbjct: 5   DLAGLAAFVAIARERSFRRAAATLGVTPPTLSHTLRELETQLGIRLLNRTTRNVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       +  +      L      P G +RI    +    +L     E    YP I 
Sbjct: 65  EHLLAHLDPAFEDIAAALDSLNRFRETPHGLVRINAPRNAIGLVLAPRFGELARDYPGIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ D    +I     D  IRL + +Q      R    + +   A P Y +    P S 
Sbjct: 125 LEVVADEGFANIVEAGFDAGIRLGEDLQHGMRAVRVGPDLRLAIVATPAYFRRQGRPGSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +EL  H  I +  +     E + W  +         +S  L ++    ++Q  +   GIA
Sbjct: 185 EELLGHRCIGWRKV--SSGELYKWQFSKGTKALSVAVSGPLVLDDPRLMLQAALADVGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  V ++     L R++ D   P    +  YP    +   L A  + +
Sbjct: 243 FAIEEEVAEHLAAGRLERVLADWCAPFPGFHLYYPNRRNHPAALSAVIDLL 293


>gi|226944717|ref|YP_002799790.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
 gi|226719644|gb|ACO78815.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
          Length = 311

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 131/283 (46%), Gaps = 7/283 (2%)

Query: 15  ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVY 74
           A +G+F  AA QL +++S IS +I  LE  +   LF+R +R + L+E G   ++   E+ 
Sbjct: 2   AETGNFAKAARQLGVTRSVISHRIQQLEQFIQAPLFHRSSRHVRLSEVGETYYQDCVEML 61

Query: 75  HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDID 134
              E     ++    KP G+LRI  T     + L   L EF+ LYP I++++++ ++ +D
Sbjct: 62  AGFERLTENMRNLRAKPQGRLRIQVTSAFAIDYLGYLLAEFMQLYPGIELEVVVQDRIVD 121

Query: 135 ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF 194
           +  +  D A++    +   +L++R+L  +     A+P YL+N   P    +L +H  I  
Sbjct: 122 LIQEGFDVALQFFPALVD-TLVERQLFRVRRIFCASPGYLRNHAAPCHPGDLLRHT-IGL 179

Query: 195 GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN-- 252
            D  P   +           I  P    ++ +S   +  + + G+GI  LP  +      
Sbjct: 180 YDGYPSRYQFVFRRGDERLEINLP--GQVRSSSVHLLRDFALGGAGIVCLPSLVAGKELL 237

Query: 253 -PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              LV ++ D +  +F     YP   + + K++    F+  + 
Sbjct: 238 AGRLVPVLGDYVVGTFAFRAVYPTTQRGSLKVRKLIEFLAERL 280


>gi|293396104|ref|ZP_06640385.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291421602|gb|EFE94850.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 312

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 134/296 (45%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V  SG+F+ AA  L L +S+++RQI  LE ++ I L +R +R LTLTE
Sbjct: 16  MDKLAAMQTFIRVVESGAFSRAATLLDLPKSTVTRQIQALEQQLNITLLHRTSRRLTLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG   ++   +   +L   +  +  +   PSG + ++    L  + +  +L +F   YPD
Sbjct: 76  QGRAYYQGAVQWLEQLRQFEGGVIGAGQAPSGVIHVSMPHTLAYHKVIPHLTDFYRRYPD 135

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L L N  ID      DC +R+   + + +LI R L T+     A+P YL+    P 
Sbjct: 136 IQLTLNLANHAIDPIEAQVDCVVRIGA-LMNDTLIARSLGTLERITCASPDYLQRHGTPT 194

Query: 182 SIQELDK-HNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               L + H +I    + P+  + F + L   D  +         VN   + +     G 
Sbjct: 195 HPNALRRDHQMIHV--VSPQSGKPFIHQLLRQDERVTLDGDWRFAVNDANAALHAARAGL 252

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+     ++ ++      LV I+ D       V+  +PE      K++ F ++I  
Sbjct: 253 GVVTTYHFLAEEALRRGELVPILPDWQCEPAAVHIAWPENRHLASKVRYFIDWIRE 308


>gi|304395013|ref|ZP_07376897.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304357266|gb|EFM21629.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 300

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 137/290 (47%), Gaps = 8/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      ++ F  VA +GSF+ AA Q  + QS++S+QI+ LE  +G+ L +R  R + LT
Sbjct: 1   MQNKLTAIQTFVRVAEAGSFSAAARQNGMKQSAVSQQIAALEEALGVVLLHRTTRKMALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG    +   ++   +E  + +L+  +    GKL I     +G + L  +L  F   +P
Sbjct: 61  EQGQHYLQQVRQLLSAMEELEQQLRPGTQPLHGKLHIQLPSGIG-HRLMPHLIAFQQAHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q+ + L+++  D+  +  D AIRL +    ++L  R L+T+     A+P ++     P
Sbjct: 120 ALQLNIALEDRLSDLIAEGVDVAIRLSES-PPATLAARSLITVETILVASPEWIAQNGMP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +H  I F  + P        L +    +  P  S  + N+  ++MQ    G G
Sbjct: 179 ETPDDLQRHPHIRFSGISPDAPLQ---LVSGMTSVSVPVKSVFRSNNSEALMQALEAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           I  L   I  D   +  LVR++ D   P   +Y  +P+A     K++   
Sbjct: 236 IGGLQLLIGADALASGRLVRVLPDWRLPDRYLYAVFPDARFIPDKVRKLV 285


>gi|229589939|ref|YP_002872058.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361805|emb|CAY48693.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 310

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 14/299 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +  LR+F  V   GSF+  A +  L+ SSISRQI  +E  +G +L YRH R ++ TE 
Sbjct: 7   LSFKALRLFVAVLDFGSFSEVARREGLAPSSISRQIQLMEQALGQQLLYRHTRAVSPTEA 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R    +  +LE     LQE   +PSG +RI   +  GQ  +   L E    YP +
Sbjct: 67  GRLLGRHARLMLEQLEAAGQALQEQESEPSGLVRINAPMVFGQRHISPWLGELCRRYPKL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ +   +  +D   D  D   R+   +  SS+  R          A+P YL     P  
Sbjct: 127 QLDIQQTDTYVDPLQDGTDLLFRIG-VLNDSSMQARIFAPQRFRLAASPAYLARHGTPQH 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVLGSG 240
             EL  H  + +  +  +      W     +    P      +  N   ++      G G
Sbjct: 186 PDELINHQCLAYKGVTGQQ----RWFFRKGQAEWTPYSVKGPITGNHADTLTHAAEQGLG 241

Query: 241 IALLPDYIVKD---NPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + + P +++ +      L  ++ +           +   +P + + + K++   ++   
Sbjct: 242 LVVFPSWLIGEGLRAGTLQAVLTEYEVATTLEPQQIAALWPGSRRLSLKVRTVIDYFVE 300


>gi|162454395|ref|YP_001616762.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161164977|emb|CAN96282.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
          Length = 305

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 135/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F   A  GSFT AA +L ++ S++SR+I+ LE EVG++LF+R  R +TL+++G 
Sbjct: 4   LAAIEAFVEAAELGSFTLAARRLRVTPSAVSRRITQLEGEVGVRLFHRTTRAVTLSDEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                      +L+  Q        +P+G LR+     +G++++   L  F   YPD+ +
Sbjct: 64  AFFERARAALRELDDAQRATSGLRDRPAGLLRVEAPTVIGRHVIVPVLARFAERYPDVDV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +   D++ +  D A+RL   +  S LI R +    M    AP YL+    P ++ 
Sbjct: 124 ELALRDDPADLASERIDVAVRLG-TLPDSGLIARPVGRSRMLVCGAPGYLREHGRPRTVD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H  +  G  +   +  +     V      P    + V+   ++++  + G+G+A L
Sbjct: 183 DLERH--VRLGYALHGRLLPWRLRDGVKVREIAP-TRRIVVDDGEALIELAIEGAGLAWL 239

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D+++        LV ++ D    +  +            K++AF   +
Sbjct: 240 CDFMLARAGKARKLVEVLPDTACDAVAISVVSLPTRHVLPKVRAFTEHL 288


>gi|53724682|ref|YP_102061.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67641468|ref|ZP_00440246.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|76809348|ref|YP_332304.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|121599243|ref|YP_994015.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124386169|ref|YP_001028321.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126449423|ref|YP_001081965.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126454951|ref|YP_001065008.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134279759|ref|ZP_01766471.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167004337|ref|ZP_02270097.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167718183|ref|ZP_02401419.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167737216|ref|ZP_02409990.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167814346|ref|ZP_02446026.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167822823|ref|ZP_02454294.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167901396|ref|ZP_02488601.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167909627|ref|ZP_02496718.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|217420102|ref|ZP_03451608.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226196746|ref|ZP_03792326.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237810916|ref|YP_002895367.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242314629|ref|ZP_04813645.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254176866|ref|ZP_04883523.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254181738|ref|ZP_04888335.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254196499|ref|ZP_04902923.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254203745|ref|ZP_04910105.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254208721|ref|ZP_04915069.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254258874|ref|ZP_04949928.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254360227|ref|ZP_04976497.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52428105|gb|AAU48698.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|76578801|gb|ABA48276.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|121228053|gb|ABM50571.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124294189|gb|ABN03458.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126228593|gb|ABN92133.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126242293|gb|ABO05386.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134248959|gb|EBA49041.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147745257|gb|EDK52337.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147750597|gb|EDK57666.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148029467|gb|EDK87372.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160697907|gb|EDP87877.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169653242|gb|EDS85935.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184212276|gb|EDU09319.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217397406|gb|EEC37422.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225931277|gb|EEH27284.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504727|gb|ACQ97045.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238522409|gb|EEP85853.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242137868|gb|EES24270.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243060321|gb|EES42507.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254217563|gb|EET06947.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 310

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 121/299 (40%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     SGK+R+++T D G++ L   L EF   +P+
Sbjct: 61  EGRLYLNCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRHQLLDWLDEFNTRHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   +   +   ++  D  D AIR   P    +LI R+L        A+P ++     P 
Sbjct: 121 VTFAVTASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCASPAFVDRYGTPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPLDLARFPCNVITVASGPLNVWRFTRGDDTQTYTVPLANAHETNDGGLTREWTIRGYGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           AL   + +  +     L  ++ D       ++  Y        +++   +F+  + AR+
Sbjct: 240 ALKSIWDIAADVRAGRLRVLLPDWRHHDAPLHAIYHSKRYMAPRVRVLLDFLVERFARE 298


>gi|86145043|ref|ZP_01063375.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85837942|gb|EAQ56054.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 298

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 11/291 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA   SFT AAE L +S+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFVEVANCASFTQAAEHLDMSRLQVSRHVQEIEGWLKQRLLHRTTRKVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++ H+    ++     +   SG +RIA  I L QN+L   +++F   +P+
Sbjct: 61  AGEIALQRCEKILHETAELEVTSLNQTDDLSGVIRIAAPIGLTQNMLLDVVEQFTERHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L   ++   +  +  D A+R        SLI RKL+ I     A+  YL    EP 
Sbjct: 121 ITVELFASDRFAQLVDERIDIALRYTDQ-PDDSLIARKLMEIDSVVCASQVYLDKYGEPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++ L +HN   F  L     +        ++         ++ N    + +    G GI
Sbjct: 180 TVEALRQHNC--FRHLSVSKWD----FVKDNQHYSVEVSGTIKANDVGVLTRAAQHGKGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             LP  +         L RI++D ++PS  ++  Y         ++ F +F
Sbjct: 234 VRLPCDLANPLIAEGKLKRILDDFVSPSSVLWAVYLSRSYQLPVVRQFIDF 284


>gi|304394925|ref|ZP_07376809.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304357178|gb|EFM21541.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 294

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 130/298 (43%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + L VF +VA++ +F  AAE+L +++ +IS+ +  LE  + I L  R  R + LT
Sbjct: 1   MNADKNALEVFVIVAQTRNFRLAAEKLGVTRPAISQSLRRLEDRLNITLMQRTTRSVQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L+   +   ++L     +L E + +P G+LR+A +    + L    L  F+  YP
Sbjct: 61  EAGQRLYAEVAPAINQLNRAVTDLTELATEPRGQLRLAISSIAERMLGGELLASFITAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + + +++ DI     D  +RL + I    +           A A+P YL     P
Sbjct: 121 QVELDITVTDEEFDIVGQGYDAGVRLGEVIAQDMIAVPVSTAQRQVAVASPTYLAREGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              +EL  H  I +       +  + W  A             L  N    +++    G 
Sbjct: 181 QHPEELVNHRCIGWRK--GPGLAPYRWEFAEQGCNFDVAVNPQLTTNDMGVMIRTACAGG 238

Query: 240 GIALLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI+   +     YI +    L+ I+++ +      Y  +P       K++A  + + L
Sbjct: 239 GISFGMEETFQPYIAR--GELITILDEWLPGFAGFYLYFPSRKNLAPKMRALIDHVRL 294


>gi|209543840|ref|YP_002276069.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531517|gb|ACI51454.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 314

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 119/286 (41%), Gaps = 7/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  SF  AA +  +S S++S  I  LET +GI+LF R  R + +T  G + 
Sbjct: 8   ALETFVAVARHRSFRKAAAERGISASALSHIIRDLETSLGIRLFNRTNRTVRITAAGEQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    +L     ++     KP G LR+       + +++  L  F+  YPDI +++
Sbjct: 68  LHRVAPALGELTEAYEQINTLRDKPRGTLRLNVPRSAAELVIRPLLGRFMSEYPDITLEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + ++  +DI     D  IR+ + ++   +              AP Y  +   P    EL
Sbjct: 128 VTNDGLVDIVAAGFDAGIRITERLEQDMIAVPVGPQRRFAVVGAPSYFADRSVPRHPGEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  I              W    D    E  I   L V+ ++ ++Q  + G GIA + 
Sbjct: 188 HNHACIGRSYPSGVLR---TWTFAKDAETYELTIRGPLIVDEHILMLQGALDGVGIAYVY 244

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + +V++     +L+R++ED        + CY         L+AF  
Sbjct: 245 ESLVEEYLREGSLIRVLEDWCPIMPGFFLCYHGRRHIPATLRAFIE 290


>gi|77461911|ref|YP_351418.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385914|gb|ABA77427.1| putative lysR-family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 308

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 132/298 (44%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF +VA+   F+ AA +L LS +S++R ++GLE  +G +L  R  R + L+E
Sbjct: 1   MDRFQEMQVFAIVAQEQGFSAAARRLGLSAASVTRAVAGLEQRIGTQLLIRTTRSVHLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  +++  +     S  +P G+L +   +  G+  +   +  +L  YPD
Sbjct: 61  AGLRYLEDCRRILAEVQEAEDSAAGSHTQPRGQLTVTAPVLFGELFVTPVMARYLTQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I  +L ++ + +  +  D A+R+ + +  S+    ++  +      +P Y      P 
Sbjct: 121 VSINALLLDRVVSMVEEGVDVAVRIGE-LPDSNQHAIRVGEVRRVICGSPEYFAVHGRPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q L    ++    +  +    F     +     EPR   L V +  + +    LG G+
Sbjct: 180 HPQALAGAPVVATSAIGQQRSWPFMEHGELIGVKPEPR---LVVTANQAAITAASLGLGL 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +  Y V     +  L  ++ +   P+  ++  Y    K   ++++F +F+    R+
Sbjct: 237 TRVLSYQVASKVASGELEIVLAEFELPALPIHVVYQGGRKAPARVRSFVDFMVNALRE 294


>gi|186473797|ref|YP_001861139.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196129|gb|ACC74093.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 320

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 132/298 (44%), Gaps = 10/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++ VF  +   GSFT A+E+L +S  ++SR +  LET VG +L  R  R +  T+
Sbjct: 1   MDKFREMEVFVAIVDRGSFTGASEKLGMSAPTVSRALHSLETRVGAQLIARTTRSIRPTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V   +   +  +     KP+G L ++  +  GQ  +   +  ++  YPD
Sbjct: 61  AGMFYLDACRSVLDTITDAEANISAGQDKPAGTLTVSAPVLFGQRFIAPLINAYVNSYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++  ++   +  +  D A+R+   +  SS+    L ++    YAAP YL    EP+
Sbjct: 121 VSVKVVYVDRTTRLIEEGVDIAVRIGH-LGDSSVFAVPLGSVCRRTYAAPAYLDAYGEPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             +++ +H+ +++  +         WL   +      RI   + V+   + +   V   G
Sbjct: 180 HPKDIGRHHCVSYTGVT----HPLEWLFCENGSRLPVRIRPRMIVDLASAAVMAAVDRVG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  L  Y       + +L RI+      S  V   + E   ++ K+++F  F+    R
Sbjct: 236 ITQLLSYQAAPELLSGSLQRILAAFEPESIPVNLLHVERKSSSMKIRSFVEFVTETLR 293


>gi|83716587|ref|YP_438606.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650412|gb|ABC34476.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 305

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 122/296 (41%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  I  LE EVG  L  R  R L +T+
Sbjct: 12  DVNLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHIQRLEAEVGASLVVRTTRRLNVTQ 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    ET    +   +    G LR++  +D G  ++   L      +P 
Sbjct: 72  AGRTFYDACRDILRATETALAAVAGEAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPA 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P 
Sbjct: 132 LDIELQCDDRVVDLVRDSLDVAIRLGR-LADSNHRAVKLGGFERWLVASPAFVARHGAPP 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L     +    +    +E  N                   N+  +     + G G 
Sbjct: 191 APEALGALPYVMLSTVPRTTLELAN---ARGERASVRCRRAFASNTATACRAAVLAGGGF 247

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +   +   D+     LVR++ D   P   ++  +P A   + K++A  + +  + 
Sbjct: 248 GVATSFSSADDIAAGRLVRLLPDWSFPPGDIHAVFPSASHPSAKVRALIDALKTRL 303


>gi|24372292|ref|NP_716334.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24346225|gb|AAN53779.1|AE015516_1 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 329

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  
Sbjct: 1   MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  ++ +  +  +L+ T  E+     +  G LRI        N+L   +  F+ L+P +
Sbjct: 61  GSHFYQRSQNILAQLDETLFEMTNDDAEIRGHLRIQMFPIHSMNVLMQAIFRFMDLHPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I   + +D+  +  D A  +   + +  L+ R + T  +  YA+P YL     P +
Sbjct: 121 TVEVISSAESVDMVKNNLDVAFVVEPALDTLDLVVRPIFTTDLCFYASPTYLAKYGTPNT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +E++ HN+  F     K   +      +              NS    +++ + G GI 
Sbjct: 181 TKEIESHNVSLFRLSNGKIFNEL----WIGAEQEVRVRGNFCSNSVEVAVEFALQGRGIV 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P  +V D   +  L+ ++ D+       Y  YP     +   + F +FI  + 
Sbjct: 237 YAPAEVVADLVASGQLITLLPDIPPHPGECYLAYPSRRYVSLASRRFIDFIIQEL 291


>gi|110834214|ref|YP_693073.1| LysR family transcriptional regulator [Alcanivorax borkumensis SK2]
 gi|110647325|emb|CAL16801.1| transcriptional regulator, LysR family [Alcanivorax borkumensis
           SK2]
          Length = 301

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +++F + A   + + A  +L +  +  S +++ LE  VG  L  R  R + L+ +
Sbjct: 1   MDTEGIKLFVLAAEKLNISAAGRELGMPAAVASAKLAKLEKTVGADLLKRTTRKVALSVE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+       E+  +       L   +   SG LR        Q  +   + +FL LYP I
Sbjct: 61  GADFLPYAREILAQENAALAALGYGNETVSGNLRFTAPSTFAQQFIVPLIPDFLALYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L + ++D+     D A+R    +  S+L  RKL        A+  YL +   P+ 
Sbjct: 121 SLDLRLSDMELDLIQGSFDLALR-NAVLPESNLHARKLAEDQRILCASSDYLDSHGIPVR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H LI F       + +    +      G      L ++  LS       G+GIA
Sbjct: 180 PDDLLNHQLIAFKSASTIKLIEAGGKSGEFNTRGPGH--RLTIDDGLSYKIATHCGAGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK 293
           +   + V     + +LV+++ +    +   ++  YP++   T K++ F +F+  +
Sbjct: 238 IHSLWSVHKELADGSLVQVLPEYRMDAEPALWLVYPKSNVLTAKVRVFIDFLIER 292


>gi|15597743|ref|NP_251237.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9948605|gb|AAG05935.1|AE004682_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 305

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 123/272 (45%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    +    +   LE     L
Sbjct: 28  RQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYRQRLERILDDLEAADAAL 87

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
                 PSG LR++  + L    L   +  FL  YP+++++L+L +   D+  +  D A+
Sbjct: 88  TSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPELRLELLLQDGRQDLIAEGIDLAL 147

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R    +  S L+ R L+ +     AAP YL    +PL  + L +H  I F          
Sbjct: 148 RGSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALREHECIRFS----LSGHA 203

Query: 205 FNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIME 260
             W    DR  I  P     +V+S L++    + G G++L+P   V+       LV ++ 
Sbjct: 204 DRWTFRKDRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPRLYVQAELAEGRLVELLA 263

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D       ++  YP   +  GK + F +F+  
Sbjct: 264 DWKADETAIHAVYPS-RQLAGKTRVFLDFLTE 294


>gi|218892081|ref|YP_002440948.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254240345|ref|ZP_04933667.1| hypothetical protein PA2G_00992 [Pseudomonas aeruginosa 2192]
 gi|126193723|gb|EAZ57786.1| hypothetical protein PA2G_00992 [Pseudomonas aeruginosa 2192]
 gi|218772307|emb|CAW28089.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 311

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 133/299 (44%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E  +  + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +   R 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGRRL 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               ++L+    +  G +          +          R   L V+ ++   +  V G 
Sbjct: 181 -EHPEDLEDLPFL--GAIHNDRKVHATLIGPDGSRYQLEREPRLGVDDFVLRKKAAVAGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ LLP+        + +LVRI+     P  T+   Y         ++A  +F+    +
Sbjct: 238 GVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAYLPRSSQIPAIRALIDFLVEALQ 296


>gi|254240082|ref|ZP_04933404.1| hypothetical protein PA2G_00720 [Pseudomonas aeruginosa 2192]
 gi|126193460|gb|EAZ57523.1| hypothetical protein PA2G_00720 [Pseudomonas aeruginosa 2192]
          Length = 304

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 113/291 (38%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +AR  SF  AA  L ++  ++S  +  LET++GI+L  R  R ++ TE G
Sbjct: 5   DLAGLAAFVAIARERSFRRAAATLGVTPPTLSHTLRELETQLGIRLLNRTTRNVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       +  +      L      P G +RI    +    +L     E    YP I 
Sbjct: 65  EHLLAHLDPAFEDIAAALDSLNRFRETPHGLVRINAPRNAIGLVLAPRFGELARDYPGIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ D    +I     D  IRL + +Q      R    + +   A P Y +    P S 
Sbjct: 125 LEVVADEGFANIVEAGFDAGIRLGEDLQHGMRAVRVGPDLRLAIVATPAYFRRQGRPGSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +EL  H  I +  +     E + W  +         +S  L ++    ++Q  +   GIA
Sbjct: 185 EELLGHRCIGWRKV--SSGELYKWQFSKGAKTLSVAVSGPLVLDDPRLMLQAALADVGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  V ++     L R++ D   P    +  YP    +   L A  + +
Sbjct: 243 FAIEEEVAEHLAAGRLERVLADWCAPFPGFHLYYPNRRNHPAALSAVIDLL 293


>gi|254248789|ref|ZP_04942109.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875290|gb|EAY65280.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 310

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 129/297 (43%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  VA +G  +  A +L ++  + S+Q++ LE  + ++LF R    + LT 
Sbjct: 1   MDRLKALTVFVRVAVAGGISAGARELAMTPQAASKQVAALEALLNVRLFQRSTHRIALTV 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L         +LET    L +  V   G LR+A    L +  L   L EF   +P 
Sbjct: 61  EGERLLAQCRGAVGELETALRMLDDDRVHAVGTLRVAAPYSLARRFLAPLLGEFCDQHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +L++ +   DI     D A+R    +  S LI R++  + +   AAP YL+    P 
Sbjct: 121 MTAELVVSDDMADIVEQRIDLAVRTGD-LPDSGLIARRIAELQLVVCAAPAYLRRHGAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +I  L  H    F  L P+  + F W   VD  +   +I   +  N   + +   + G+ 
Sbjct: 180 TIDALRDHRCTAF--LYPRTGKPFPWEFLVDGRVDTRQIDPFIATNDIDAELDTVLSGAA 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I     Y V ++     LV ++   +T  + +Y C P+      + +   +F+  + 
Sbjct: 238 IGQFFGYSVHEHVREGRLVPLLTRHVTCRYGLYLCMPQREHLPRRNRLLMDFLVARL 294


>gi|317053970|ref|YP_004117995.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316951965|gb|ADU71439.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 300

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 124/291 (42%), Gaps = 8/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +   F  V R+GSF+  A  L    S ISR+++ LE  +GI+L  R  R +  TE+G
Sbjct: 5   DFRQREAFLAVVRAGSFSAGARALGRDVSVISRRVAALEKRLGIRLIERTTRRIRPTEEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +           L   + E +  + +P+G +R+      G+  +   L EFL  YPDI+
Sbjct: 65  QRYRHKIELADELLREAEEEARLLAARPAGTIRLTVPAAFGRRWVAQALPEFLRHYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L   ++  D+  D  D A+R+   +  + L  RKL          P YL +       
Sbjct: 125 IVLQCSDRYADLIADNFDMAMRIGA-LADNRLTARKLAPTRRLLCVTPQYLHDHPALQVP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ + F    P        L      +  P  +  + +   +++   + G G+ +
Sbjct: 184 DDLRQHDCLGF---TPMSTWPEWRLEQQGHTVSIPVKTRFESDDTDTLIAAGLSGHGVLM 240

Query: 244 LPDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
           + D++V        LV ++ D        V+   P +   + K+ A  +++
Sbjct: 241 VADWLVHRELAEGVLVPVLTDWQPVGEDGVWLLKPSSQLQSAKVAALTDWL 291


>gi|15596509|ref|NP_250003.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100763|ref|ZP_01364681.1| hypothetical protein PaerPA_01001791 [Pseudomonas aeruginosa PACS2]
 gi|218892584|ref|YP_002441453.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234434|ref|ZP_04927757.1| hypothetical protein PACG_00283 [Pseudomonas aeruginosa C3719]
 gi|254239685|ref|ZP_04933007.1| hypothetical protein PA2G_00306 [Pseudomonas aeruginosa 2192]
 gi|9947249|gb|AAG04701.1|AE004560_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126166365|gb|EAZ51876.1| hypothetical protein PACG_00283 [Pseudomonas aeruginosa C3719]
 gi|126193063|gb|EAZ57126.1| hypothetical protein PA2G_00306 [Pseudomonas aeruginosa 2192]
 gi|218772812|emb|CAW28597.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 303

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+   F  V   GS + AA+ L  +++ +S  +  LE E+G+ L  R  R + LT+ G
Sbjct: 3   SLDRFETFRAVVDCGSLSAAADTLGQTRAVVSFNLKRLEAELGVSLLSRSTRRMALTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++   +V  +      + +    +  G LR+ TT + G   L   L+ F  L+P +Q
Sbjct: 63  ERFYQRCVKVLDEARLAIDDARAEHGELRGSLRVTTTQEYGLRQLVPALQAFARLHPALQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE--PL 181
           +QL   +   D+  +  D AIRL + ++ S+    +L +  + A A+P  L    E  P 
Sbjct: 123 VQLSTSSLHADLIGERFDVAIRLGR-LEDSTHHAVQLASFEVLAVASPACLAALGEPPPT 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++ L++   +    L               R    PR   L  ++  ++  + + G GI
Sbjct: 182 DLESLERLQNLGHSRLADSLPWQVRAPDGALRSYRGPRHPMLLADNAAALRAFALDGLGI 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+LPD++V+ +     L R++ D   P   V+  YP       K++AF +F+  + 
Sbjct: 242 AVLPDWLVQADLRCGALQRLLADHGFPLQGVHAVYPPTRHLPSKVRAFIDFLKTRL 297


>gi|330809437|ref|YP_004353899.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377545|gb|AEA68895.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 297

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 115/292 (39%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  +L  F  VAR  SF  AA++  +S S++S  +  LE  +G++L  R  R +T TE G
Sbjct: 6   DLSELDAFAAVARHRSFRKAADERGVSASALSHAMRALEARLGVRLLNRTTRSVTPTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    ++     +L      P+GKLR+       + +    L  F+  YP IQ
Sbjct: 66  HQLLATLAPTLQQVADALAQLTSMQEVPAGKLRLNVARPAARAVFAKVLAPFVARYPRIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+ D+   DI     D  +R  + +    +             A+P YL       + 
Sbjct: 126 LDLVTDDGLTDIVNGGFDAGVRFGESLAGDMIAVPVGPPQSFVTVASPTYLAAKGIAQAP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I      P             +PI       L +     ++Q    G+GIA 
Sbjct: 186 RDLLDHACI--ARRFPSGKLYAWEYQAQGQPIRLSVTGPLILEDDALMIQAAKDGAGIAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + + +V+D+     L  ++     P    +  YP        LKAF  FI  
Sbjct: 244 VYEELVRDDIRNGQLTELLAQWKAPPSRFFLYYPSRRHVPPALKAFIEFIRA 295


>gi|330448716|ref|ZP_08312364.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492907|dbj|GAA06861.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 312

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 130/288 (45%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ +  SG+FT AA +L +S S +S+Q+S LE E+ +KL  R  R  TLT++G + 
Sbjct: 8   RMAIFHTLVNSGNFTSAAHKLGVSTSHVSKQLSLLEAELQVKLVQRTTRSFTLTDEGIEY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   +V   +      + +   + SG LR+  +   G   +   ++ F   +PD+ +++
Sbjct: 68  AKFCEQVVSAVLDADAMMADIRDEVSGTLRLGLSQSFGTMHIIPAIEHFRRQFPDLHVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   ++  +  D  I   + I     + ++L        A+P YL +   P    +L
Sbjct: 128 SLFDHRANMVEEGLDLWITNVENIP-EGYVAQRLADTRFIVAASPEYLMHHSAPTHPSDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + + +   + +    W    D+      +S   +V+   ++   CV G GIA L 
Sbjct: 187 QEHNCLVYQN---RQVNHGTWSFIRDQEGLCVTVSGNYRVDLAEAVRDACVSGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNF 289
            Y++ D      L++++ D         Y  YP       K+ A  +F
Sbjct: 244 TYLLTDEFKTGKLIQLLNDWEANQGMHFYAVYPSRKHLPKKIVAAISF 291


>gi|146282500|ref|YP_001172653.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145570705|gb|ABP79811.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501]
          Length = 306

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 119/271 (43%), Gaps = 7/271 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
             L +S +  S+ +  LE  +G+KLF+R  R L+LTE G         +  +++  +  +
Sbjct: 25  RHLDMSPAMASKHVDALERRLGVKLFHRSTRRLSLTEAGGNYLEACQRILPEIDEAEAGV 84

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
               V+ +G LR+   +  G   +   + EF   +P ++++L L +  +D+     D A+
Sbjct: 85  ASQRVEATGLLRMNVPLTFGTQFIAPLIPEFSRRHPAVKVELGLTDSQVDLLDGGWDMAV 144

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R+ + ++ S L  R+L    +   AAP YL     P S+ +L +HN + +   +      
Sbjct: 145 RIGR-LEDSPLQARRLADCPLLVCAAPSYLDQRGVPRSVADLGQHNCLGYS--LSALAGG 201

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRI-ME 260
            +W       +       L  N+  +++   V G G+   P +IV     +  LV + ++
Sbjct: 202 KHWAFGEHAELRVAVSGDLLANNGEALVAAAVGGQGVIYQPQFIVASALRSGELVALELD 261

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                   ++  YP   +   K++   +++ 
Sbjct: 262 QPCMGLGGIHVVYPPDRRPPAKVRVMIDYLV 292


>gi|148252976|ref|YP_001237561.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405149|gb|ABQ33655.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 307

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 10/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     V  +GSF+  A +  +S+++++RQI+ LE   G++L +R  R L+LTE G  L 
Sbjct: 7   LAALVRVTETGSFSAVARERDVSKAAVTRQIAFLEEHFGVRLLHRTTRKLSLTEDGRTLL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   V   +ET +  L   S  P G +R+   +    + L   L   L   P +Q++LI
Sbjct: 67  DLARPVLEGVETMEATLGRQSTSPVGLVRVGIMVAA-SHFLAPRLPTLLASNPGLQVELI 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           ++++  D+  D  D A+R  + I   S++ R++        AAP Y++    P +  EL 
Sbjct: 126 VNDRFGDMIEDRLDLAMRAGE-ITDVSVVARRIGIAARVVVAAPRYIEARGHPSTPVELG 184

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I         M    W         E R+S  ++ N    +      G GIA LP 
Sbjct: 185 RHTCIVHDVGPDSDM----WTFGGSHGAEEVRVSGSIRANDGAVVHLAARAGYGIAFLPL 240

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V D+     LVR++ D  +P   +   Y        + +    FI  + R 
Sbjct: 241 VQVVDDLRSGALVRVLGDRPSPGLPLSLTYSSRRHLAPRTRVVMEFIIEQVRQ 293


>gi|116049264|ref|YP_791933.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584485|gb|ABJ10500.1| putative LysR family transcriptional regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 303

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 134/296 (45%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+   F  V   GS + AA+ L  +++ +S  +  LE E+G+ L  R  R L LT+ G
Sbjct: 3   SLDRFETFRAVVDCGSLSAAADTLGQTRAVVSFNLKRLEAELGVSLLSRSTRRLALTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++   +V  +      + +    +  G LR+ TT + G   L   L+ F  L+P +Q
Sbjct: 63  ERFYQRCVKVLDEARLAIDDARAEHGELRGSLRVTTTQEYGLRQLVPALQAFARLHPALQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE--PL 181
           +QL   +   D+  +  D AIRL + ++ S+    +L +  + A A+P  L    E  P 
Sbjct: 123 VQLSTSSLHADLIGERFDVAIRLGR-LEDSTHHAVQLASFEVLAVASPACLAALGEPPPT 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++ L++   +    L               R    PR   L  ++  ++  + + G GI
Sbjct: 182 DLESLERLQNLGHSRLADSLPWQVRAPDGALRSYRGPRHPMLLADNAAALRAFALDGLGI 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+LPD++V+ +     L R++ D   P   V+  YP       K++AF +F+  + 
Sbjct: 242 AVLPDWLVQADLRCGALQRLLADHGFPLQGVHAVYPPTRHLPSKVRAFIDFLKTRL 297


>gi|325168821|ref|YP_004280611.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064544|gb|ADY68233.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 296

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 130/301 (43%), Gaps = 11/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  +R+F  VA + SF   A Q+H+S  +++R ++ LE  +G +LF R  R + +TE
Sbjct: 1   MDRWQAMRIFVKVAETESFADTARQMHMSAPAVTRSVAALEDIIGARLFVRTTRSVKMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++      ++   +   +     S   P+G L +  ++  GQ  +   +  FL  +P 
Sbjct: 61  AGARYFEDCRKILSDIAEAEAAAGGSYATPTGTLSVTASVMFGQMYVLPVVTGFLDAFPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ + +  ++ ++I  +  D A+R+   +  S L   K+ ++      +P Y      P 
Sbjct: 121 MKARTLFIDRPVNIVDEGIDVAVRIGH-LPDSGLSAIKVGSVRRVVCGSPAYFDRHGIPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H +               W  + D  +     + LQ N+  + +     G G+
Sbjct: 180 TPSDLRDHRI----AASTSAWASPEWRFSDDFRVTID--AALQCNTNEAAITSAREGWGL 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             + +Y +  +    +L  ++ +   P   ++  +PE      K++AF +    + R+ +
Sbjct: 234 TRVLNYQIGPDLMAGDLQIVLSEFEEPPLPIHIMHPEGRNAPAKVRAFVDMAVARLRENR 293

Query: 299 F 299
            
Sbjct: 294 L 294


>gi|313106300|ref|ZP_07792544.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310879046|gb|EFQ37640.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 303

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 133/296 (44%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+   F  V   GS + AA+ L  +++ +S  +  LE E+G+ L  R  R + LT+ G
Sbjct: 3   SLDRFETFRAVVDCGSLSAAADTLGQTRAVVSFNLKRLEAELGVSLLSRSTRRMALTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++   +V  +      + +    +  G LR+ TT + G   L   L+ F  L+P +Q
Sbjct: 63  ECFYQRCVKVLDEARLAIDDARAEHGELRGSLRVTTTQEYGLRQLVPALQAFARLHPALQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE--PL 181
           +QL   +   D+  +  D AIRL + ++ S+    +L +  + A A+P  L    E  P 
Sbjct: 123 VQLSTSSLHADLIGERFDVAIRLGR-LEDSTHHAVQLASFEVLAVASPACLAALGEPPPT 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++ L++   +    L               R    PR   L  ++  ++  + + G GI
Sbjct: 182 DLESLERLQNLGHSRLADSLPWQVRAPDGALRSYRGPRHPMLLADNAAALRAFALDGLGI 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+LPD++V+ +     L R++ D   P   V+  YP       K++AF +F+  + 
Sbjct: 242 AVLPDWLVQADLRCGALQRLLADHGFPLQGVHAVYPPTRHLPSKVRAFIDFLKTRL 297


>gi|167032441|ref|YP_001667672.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166858929|gb|ABY97336.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 312

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 120/296 (40%), Gaps = 4/296 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ L  F   A  GSF  AA +L ++ +++ + ++ LE  +G++LF R  R LTLTE G
Sbjct: 5   SFNALECFIRSAEVGSFAEAARRLSITPAAVGKHVAQLEARLGVRLFQRSTRKLTLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     S+ +  ++     L  +  +P+G LR++     G+  +   L EFL  YP I 
Sbjct: 65  QRFLGEVSDSFRTIQYAVANLASAEGQPAGLLRVSMGTVFGRLYVLPLLSEFLRRYPAIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+     D AI     +    ++ RKL   H    AAP YL+        
Sbjct: 125 PDWHFDNRQVDLIGQGFDAAIGGGFELP-PGVVARKLTPAHRVLVAAPAYLQQHAPIDDP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q L +H  I         +  +   +             + ++   +       G GIAL
Sbjct: 184 QVLHRHEGILIRSPQTGRVRSWPLTSRWQAQQPLQLRQAMTMSDSDAACAVAEQGLGIAL 243

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +             L R++ D       +   + E     GK +AF +F+  +  +
Sbjct: 244 VSLPFAVPYLQAGRLRRVLPDWYVDDGHISLYFAEHKLMPGKTRAFIDFVVEQFAE 299


>gi|293609049|ref|ZP_06691352.1| predicted protein [Acinetobacter sp. SH024]
 gi|292829622|gb|EFF87984.1| predicted protein [Acinetobacter sp. SH024]
          Length = 326

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 131/290 (45%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L+VF  VA+  SF  +AE+L  S + IS++I+ LE  +  KLF+R  R ++LTE G
Sbjct: 6   NLSDLKVFCTVAKLKSFVESAEELGTSPAFISKRINILENTLSCKLFHRSTRHVSLTEDG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +    S +  + +     +      P+G++ I ++   G+  +   L + ++LYP +Q
Sbjct: 66  KLILERVSNILEEFDEVCELVNNPLSTPTGRMDIISSFGFGRKHIAPILSKLMMLYPKLQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I     +   D+     D  IR+   I + ++I +KL +      AAP YL     P SI
Sbjct: 126 IHFDTIDNTKDLIQHSIDLDIRIGNEI-APNMIAKKLASNFRILCAAPSYLLKHGVPDSI 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ +T  +     +      A+ D  +          N+   I Q  + G GI  
Sbjct: 185 EDLQTHDCLTISERDQSSVLWKFRHASEDVSVHIK--PRFVSNNGEIIHQLAIEGHGIIF 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D      L  I+ +    +  V+  YP  LK++ KL+    FI
Sbjct: 243 RSIWDVADELITGQLQHILPEYWQDA-DVWAVYPSRLKSSSKLQTCILFI 291


>gi|197295543|ref|YP_002154084.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195945022|emb|CAR57645.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 338

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 140/300 (46%), Gaps = 8/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF  VAR GSFT AA+ L +S +S S  +  LE  +G+ L  R  R + LT
Sbjct: 1   MDRTLHAMSVFSHVARLGSFTAAADMLGISAASASTLVRRLEEYLGVTLLQRSTRCVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +       +  ++E  Q +L  +     G+L +    ++  ++L   L  F   +P
Sbjct: 61  TEGEQYQEHCQRILGEIELMQQQLSGAGKIARGRLAVDLDQEVAHSVL-PFLPVFRANHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ +++ +      +  +  DCA+ + + +  SSL  R++   H    A+P YLK    P
Sbjct: 120 EVGLRVDVGGDADGLIANGVDCAVVVGQ-LADSSLRSRRVGQFHAVTVASPDYLKARGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
           +    L  H++I +       + +F +  TVD      +++  + VN   S ++Y V G 
Sbjct: 179 VDPDGLHCHDVIHYTPRRFGPVREFRY--TVDGAETRLKLAERISVNDVRSAVRYAVEGV 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA + + +V +      LV I+ +   P   +   YP+  +    ++AF +++  + RD
Sbjct: 237 GIAQVSERMVAEELATGTLVSILGEYGPPPLPISVLYPDRRQVPMSIRAFIDWMQTQLRD 296


>gi|317403819|gb|EFV84296.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 307

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 128/293 (43%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA++ SF+ AA  L + +S++SRQ++ LE  VG++L  R  R + LT+ G 
Sbjct: 4   LQGMELFVEVAKTHSFSRAAAALGVPKSTLSRQVAELERSVGLRLLSRTTRKVELTDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +    ELQ+    PSG LR+    D G + L  +  EF   YPD+  
Sbjct: 64  LYFERCQRIVAEAQIAHEELQKLVDTPSGPLRVNMPADFGTDFLAESFMEFSRRYPDVTF 123

Query: 125 QLILDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L N D        +D +I + + +  S+ I R L  +  H YA+  YL+   EP   
Sbjct: 124 FLDLANPDHAQRVFQTSDISIEIGE-LPDSTQIARLLGMLPAHLYASREYLEKHGEPKHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I F       +  +  L + D+ I     +   VN      +  +LG+GI +
Sbjct: 183 SDLTRHECIEFRAEGAGRVTRWP-LNSGDQHIQFTPGNRFSVNGVAMARRLAMLGAGITV 241

Query: 244 LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L      +  +  L R+  D     F VY    E      K + F  F+  + 
Sbjct: 242 LVGGQTAEQKSGQLRRVPPDWQLGPFPVYAVT-ETRLLPAKTRIFIEFLMERL 293


>gi|153002195|ref|YP_001367876.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151366813|gb|ABS09813.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 300

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 15/297 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  VA  GSFT AAE L LS+  +SR I  +E  + ++L +R  R ++LT QG + 
Sbjct: 6   AIRSFVEVANCGSFTKAAEHLDLSRLQVSRHIQEVEQWLSLRLLHRTTRSVSLTLQGEEA 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +  ++   +      + +  G +RIAT I LGQ+ L   +  F+ ++P + IQL
Sbjct: 66  LQFCQRILSEVAAMESRAHSHNSELVGSIRIATPIGLGQHSLFDVVDRFIKIHPKVSIQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +    +  +  D A+R  +     +LI R+L+TI     AAP YL +    +   +L
Sbjct: 126 VMSDSFAQLVDERVDVALRYTEQ-PDENLIARRLMTIDAVICAAPSYLDSNTPLVEPIDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN +             NW    +      +++  L+ N    ++   + G GI  LP
Sbjct: 185 LAHNCLIHS-------AQQNWPFLKELQAEHVKVTGNLKANDMGVLVSAALRGHGIVRLP 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +      +  L  ++ D  TP  T+   Y         ++AF +F    A+ W+ 
Sbjct: 238 CDLANQYLASGQLKEVLPDFTTPGQTLCAVYLSRSYQQNLVRAFIDF---TAQQWQL 291


>gi|187926689|ref|YP_001893034.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241666201|ref|YP_002984560.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728443|gb|ACD29607.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240868228|gb|ACS65888.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 311

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 125/291 (42%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  +   GS   AA   +L  ++++R++  LET +G +L  R AR L  T +G 
Sbjct: 2   LDDLALFVSIVDHGSLQAAARHANLPPATLTRRLQKLETALGCQLLLRSARSLKPTPEGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L  T   L +   +  G LR+   ++L + L       F+ ++P+I++
Sbjct: 62  LYYEQCRPLLTALAQTTATLDDDLNQVKGTLRVLAPLNLSRGLFAPAYASFMAMWPEIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N++ D+    AD AIR+ +      L QR+L  I +   A+P Y+     P   +
Sbjct: 122 ELSLSNRNEDVWRHGADLAIRVGQQ-DDPKLRQRRLGVIGIVLVASPAYVAAHGMPAHPR 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+    +        +   T++    +P   C +VN           G G+   
Sbjct: 181 DLAAHRLLVASPISTWRFTSPDGKETIEM---QPEAQC-EVNDIEMAAALAEAGQGLLYC 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +     +   LVR + D  TP   +Y  +P+  +   K++     +  
Sbjct: 237 PRTLCHRALEAGQLVRALPDWRTPQRPIYAVWPQ-QQLPRKVRTLLEHLAE 286


>gi|148253783|ref|YP_001238368.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405956|gb|ABQ34462.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 297

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 127/294 (43%), Gaps = 6/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L  F  +AR  SFT+AA +L +SQS++S  I  LE  +G++L  R  R +  T  G 
Sbjct: 6   LDDLLAFVAIARERSFTNAAAKLGVSQSALSYTIRELEARLGVRLLTRTTRSVAPTAAGL 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L         ++E     ++E   KP+G +RI  T    + +L   L + L  YPDI++
Sbjct: 66  RLLTTAGPRLEEIEAELAAIRELRDKPAGTIRITATEYAAEAILLPKLAKLLPAYPDIKV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++D    DI     D  +R  + ++   +  R    + +    AP Y K    P   Q
Sbjct: 126 EIVVDYGLTDIVAKGFDAGVRSGEQVEKDMVAVRIAPDMRIAVVGAPSYFKTRPVPKKPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  HN +T    +P       W           R+   L  N+   IM+  + G G+A 
Sbjct: 186 DLIGHNCLTL--RLPTHGGLHAWEFEKGGRDLRVRVEGQLTYNATSQIMKAALAGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +P+   + +     L R++ED   P    +  YP   + +         +  +A
Sbjct: 244 VPEGWAQPHIAKGRLKRVLEDWCLPYSGYHLYYPSRRQQSAAFTLLVEALRHRA 297


>gi|90413364|ref|ZP_01221357.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90325606|gb|EAS42075.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 360

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 126/299 (42%), Gaps = 19/299 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LR    +A+ GSF  AA  L +  +++SR++  LE  +G +L  R +R + LT  
Sbjct: 63  MKLDDLRALIAIAQHGSFRAAANALDIPPTTLSRRLQRLEDTLGSQLVIRDSRNVALTPL 122

Query: 63  GSKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G         +  +LE T  EL + SS  P G LRI+  + L    L     +FL LYP+
Sbjct: 123 GRNYFERCQPLLGELEATTSELMDTSSSNPRGALRISAPVGLLTYQLMPLFNQFLALYPE 182

Query: 122 IQIQL-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + + L  L N+  D S +  D   R+ +   +SS    ++        A+P YL     P
Sbjct: 183 VTLSLNHLSNQHHDYSPEQYDVVFRVGQQ-PNSSFAAARIGESQRTLVASPEYLAQYGIP 241

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------SCLQVNSYLSIMQY 234
               EL+ H  +         + +F W  T    I             + +    S+ Q 
Sbjct: 242 RHPDELNHHARLA-------TVPEFEWALTCKTDIAHSETIWINSPVRMAIADLNSVKQA 294

Query: 235 CVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G GIA LP+Y+V D      L  +++D  +P   +Y  Y         +  F +F+
Sbjct: 295 AISGLGIACLPNYVVADALEKSTLTTMIDDWYSPPRPIYMLYQRLGYVPNHITCFIDFM 353


>gi|238921339|ref|YP_002934854.1| DNA-binding transcriptional regulator [Edwardsiella ictaluri
           93-146]
 gi|238870908|gb|ACR70619.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 320

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 123/298 (41%), Gaps = 10/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V   GSFT AA QL +S SSIS+ I+ LE  + I+L  R  R ++LTE G 
Sbjct: 18  LKRMAIFARVVECGSFTGAAAQLAMSVSSISQTITKLEQSLQIRLLNRSTRRISLTEAGR 77

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++  + +    +L   +  PSG LRI  +  + QN+L       L  YP + +
Sbjct: 78  IYYQGCRKMLQEAQEVHEQLYAYNNTPSGTLRIGCSATMAQNVLAPISARMLAEYPGLSV 137

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  +R    +Q S L  R L  + M   AA  YL+    P +  
Sbjct: 138 NLVTGVPAPDLIADGLDLVVRAGD-LQDSRLFCRSLGAMPMVICAAKCYLQRHGTPENPA 196

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  ++ + F     +   +    A     +          N   +++ +   G+GI  L
Sbjct: 197 ELGSYSWLNFS---GQPAPELTLTAPEGESLRLMPSGRFHTNDAQTLLSWLNAGAGITYL 253

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARD 296
           P   V D      +        +P   VY  Y +      KL+    ++   F +  D
Sbjct: 254 PLMWVIDAVRRKEVEILFPQYQSPPRPVYALYAQKAHLPIKLRLCLEYLSDYFAQMAD 311


>gi|238028800|ref|YP_002913031.1| LysR family regulatory protein [Burkholderia glumae BGR1]
 gi|237877994|gb|ACR30327.1| LysR family regulatory protein [Burkholderia glumae BGR1]
          Length = 322

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 144/291 (49%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMQMSAAMASKHVMHLEQQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +S+ P G+LR+ +    G   +   + ++   Y D+ +++ 
Sbjct: 67  ERLVQALTELDEAGQAVGAASIVPQGRLRVTSLSAFGLRHVMSAVTDYAARYADVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL+    P ++ +L
Sbjct: 127 LSDRVVELIDEGYDVAVRAAPFGLKSSSLVARQIATAHILLVASPAYLEEHGMPAALADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           ++HN +   D  P  ++   + +     +       L VN   ++    + GSGIA+L  
Sbjct: 187 ERHNYLR-RDTGPSSIDSAAFESAAASRVTL--SGNLIVNHLEALRLAVLNGSGIAMLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +V D+     LV ++ + + P    +Y  Y      + K+++F +F+  +
Sbjct: 244 EVVGDDIEAGRLVPLLLEAMPPRELPIYAVYASRRHVSAKVRSFVDFLADR 294


>gi|15965088|ref|NP_385441.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307315058|ref|ZP_07594643.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|15074268|emb|CAC45914.1| Putative transcription regulator [Sinorhizobium meliloti 1021]
 gi|306898897|gb|EFN29547.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 313

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V +   F+ AA  L++ +S +S+ ++ LE ++G++L  R  R L +TE G
Sbjct: 3   DLNDIALFAAVVKHNGFSAAARDLNVPKSKLSKHVARLEEQLGVRLLERSTRKLRMTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   +   + E+     +P+G +R+A  I     +L   L  F   YP ++
Sbjct: 63  RIFYEHAQGLLDGVAAAEAEIAAVRAEPTGVVRLACPIGFTP-MLADILPAFHRRYPGVR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ ID+  +  D A+R R  +   S LI RK   +     A+P  L    E ++
Sbjct: 122 LLITASNRRIDLIEERIDVALRARDQLDTDSQLIVRKFGEVRQRLAASPTLLARLGE-IT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +   ++  +  P  +  +  +      I       +  + +L + +  + G GIA
Sbjct: 181 TDNLSQMPTLSMNEQHPNDV--WRLVHATGGAIEIAHRPVVGCSDFLILERAAIEGMGIA 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLPD+I +       LV ++ +  + +  V+  +P         +A  +F+  
Sbjct: 239 LLPDHICERAFRTGALVPVLPEWTSGNVMVHLVFPSRHGLLPATRALIDFLAE 291


>gi|312831472|emb|CBY17654.1| LysR family transcriptional regulator [Sinorhizobium meliloti]
          Length = 296

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 134/289 (46%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVA+  SFT AA +L +S S++S+ I  LE  +G++L  R  R +  TE G
Sbjct: 3   NFNDLAAFAVVAKERSFTRAAAKLRVSPSALSQTIRNLEERLGLRLLTRTTRSVASTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +  + ++E     L E   KP+G +RI        +LLQ  LK FL  YPDIQ
Sbjct: 63  ERLLRTIAPRFDEIEAELAALSELRDKPAGTVRITAGEHPAISLLQPALKRFLPDYPDIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+D    DI  +  D  +R+ + +    +  R    + M   A+P Y +    P + 
Sbjct: 123 VEIIIDYGLTDIVAEGYDAGVRMGEQVAKDMIAVRIGPDMRMALVASPGYFERHPLPKTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  HN I     +P     F W L   +R +       L  NS    +   + G G+A
Sbjct: 183 QDLTDHNCINI--RLPTYGGVFPWGLEKDERDVKVRGDGQLVFNSLAMRLASALDGLGVA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P+  V     +  LVR++E+        +  YP    ++  L     
Sbjct: 241 YMPEDHVLPYLGDGRLVRVLEEWCPYFPGYHLYYPSRRHSSPALTVLVE 289


>gi|145301009|ref|YP_001143850.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853781|gb|ABO92102.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 295

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 128/295 (43%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  VAR+GSF+  AE+  ++ + I + I  LE  VG +L  R+ R  +LTE
Sbjct: 1   MDRLTAIEIFVEVARAGSFSAVAERFEMTPAMIGKYIKWLEARVGSRLLNRNTRRQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +       +   +  + + +GK+RI   I  G   L   L  F+  YP 
Sbjct: 61  AGREYLGGCQNLLQHYRELEQNTRAHTGQAAGKIRINAPITFGSYRLTPLLCRFMAQYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+L L ++ +D+  D  D   R+  P + ++ I R L +      A+P YL+    P+
Sbjct: 121 IRIELDLCDRLVDVIGDGFDLIFRVGTP-KDAAYIARPLTSSTSVFCASPRYLQRHGTPM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H  + F   + +     ++             S    N   ++    +  +GI
Sbjct: 180 ALADLARHQCLGFTPWLTQSSLAEDFPLEHLHLWD----SQFISNHGSALKVAAINHAGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L P  ++    ++  L+ I+ D +     V   YP       +L+   +++  +
Sbjct: 236 VLQPRALLTPELESGVLLEILPDALPAPRPVNMLYPAREPMPLRLRLLIDYLSEQ 290


>gi|13472958|ref|NP_104525.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023705|dbj|BAB50311.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 311

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 130/296 (43%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + ++L  F  V  +GSFT AA++L ++++ +S Q+S LE E+G  L  R  R +T TE 
Sbjct: 5   LNLNRLVYFTTVMEAGSFTSAADRLGVAKAVVSHQVSKLEDELGATLLQRTTRRVTPTED 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E    E+   +V+PSG LR+   +D G  ++   +  +L  YP +
Sbjct: 65  GRLFYDRAMIILREAEAAYGEISHGAVEPSGTLRLTAPLDYGTRVVAPVMAAYLKAYPQM 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ I D+   ++  +  D  IR+   +  SS   R+L TI     A+P +  +     +
Sbjct: 125 RVEAIFDDAVSNLVDEQIDLGIRVGW-LADSSNQARRLGTIRQIVVASPTFAASLPADAN 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +      +    L       F+           P + C   +   +     + G G+ 
Sbjct: 184 PNQARSLAWVGNAQLRGVGQWLFSRNGETVLTELNPVVVC---DKSPAAYACVLAGIGLG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + PDY V ++     LVRI      P+  ++  +P A     K++AF   +    R
Sbjct: 241 IFPDYAVDEDIAGGRLVRIFAQWTLPTGGIHAVFPPARFRPAKVRAFVELLAAAER 296


>gi|330859444|emb|CBX69789.1| hypothetical protein YEW_GJ27750 [Yersinia enterocolitica W22703]
          Length = 304

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 126/299 (42%), Gaps = 7/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +  L VF      GS + AA +L+++ ++ S  +  LE+++G++L  R  R L LTE+
Sbjct: 2   ISFSDLDVFVRTVDCGSLSEAARRLNITPAAASIAVKRLESQLGVRLLVRSTRSLRLTEE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G             L   +  ++      SG L+++   D G+NLL   L +F   +P I
Sbjct: 62  GISYLDSARIALGALIEGEQAIKRKMTGLSGVLQLSAPSDFGRNLLVNWLNDFKQQHPHI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPL 181
           Q+ L+L+++  D+  +  D A+R   P   SSL+   +++ H     A+P YL     P 
Sbjct: 122 QLHLLLNDRHADLFREPVDIALRFGVP-TDSSLVALPILSHHRRMLCASPAYLARNGVPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + +        +    L   D             +      ++ + G GI
Sbjct: 181 TPAQLVNHQSVLYQRNGRLYNQWR--LIRQDDIQEVTMSGEYISDDGEIARRWALAGLGI 238

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           A      V  +     LV+++ D       +    P   + + +++  + F+  + R+W
Sbjct: 239 ANKAAIDVIADIRAGCLVQVLPDWQGEILPLNLLCPHRSQVSERVRGLQTFLQQRCREW 297


>gi|170690154|ref|ZP_02881321.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170144589|gb|EDT12750.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 300

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+++L  F  VA   +FT AA QL +SQS++SR +  LE  +G+ L  R  R +  TE G
Sbjct: 3   DFNELAAFMRVAHERNFTRAAAQLGMSQSALSRMVRALEARMGVPLLTRTTRSVAPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++E     L+  + +P+G +RI TT       +   ++  L  YP+I+
Sbjct: 63  ERLLSSIGPRLREIEAELESLRAMTDRPAGSVRITTTDYAANEYVWPRVQTLLHQYPEIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+ D    D+  D  D  +RL   +    +  R    + M    +P YL +     + 
Sbjct: 123 IELVYDYGLSDLVADGYDIGVRLGDQVAKDMIAMRIAPDMTMSIVGSPEYLASRIVAKTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L +HN I     +P       W  +  R   + R+   L  N+   +++  + G G+A
Sbjct: 183 QDLTRHNCINL--RLPTMNSLLAWELSKGRRELQVRVEGQLTFNNVYQMVEAALGGFGLA 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +P  +V+   +   L  ++ED        +  YP   K++  ++   + +  
Sbjct: 241 YVPKKLVEPHVEAGRLAWVLEDWFPTFVGHHVYYPSRHKSSRAVELVVDALKA 293


>gi|169796262|ref|YP_001714055.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157003|ref|YP_002319048.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483717|ref|YP_002325940.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301345502|ref|ZP_07226243.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301594992|ref|ZP_07240000.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332855393|ref|ZP_08435849.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332867261|ref|ZP_08437511.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169149189|emb|CAM87069.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|193077106|gb|ABO11877.2| transcriptional regulatory protein [Acinetobacter baumannii ATCC
           17978]
 gi|213056163|gb|ACJ41065.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986383|gb|ACJ56682.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332727483|gb|EGJ58910.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332734094|gb|EGJ65227.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 296

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 130/296 (43%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT 
Sbjct: 1   MDRLDCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLNRTTRQMNLTG 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K ++    +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP 
Sbjct: 61  CGEKFYQHCKVILSEFEWATYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREP 180
           I+I L + ++ +D++    D  IRL     + SL   K++ T   + YA P Y      P
Sbjct: 121 IKIDLFMTDQLLDVNQHKFDLTIRLDG--SAPSLANSKILNTYQRYLYATPEYFNQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL +H  + +          F       + +       +  N+   ++  C+   G
Sbjct: 179 TSLEELKEHKFLIYYQDSRHKKLIFQ---KDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+  +
Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFLTHQ 291


>gi|221368980|ref|YP_002520076.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
 gi|221162032|gb|ACM03003.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
          Length = 298

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 132/294 (44%), Gaps = 8/294 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+LR F   A++GSFT AA+QL +S    S+ ++ LE  +G++L  R  R + LT 
Sbjct: 1   MDLTDELRAFVATAKTGSFTAAADQLGVSNRLTSKYVAELEKRLGVRLLQRTTRKVGLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +   L+    E+   S   +G +R++  +  G++ + G L  F  L P 
Sbjct: 61  AGETLLARAPALLDDLDDLLGEVSHGSRGFTGTIRVSAPVTFGEDYVGGMLGRFAALNPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L++   D++ +  D A R+ +  +  SL  RKL  +   A A+P Y+     P 
Sbjct: 121 LLIDLRLNDSFADLASEGIDVAFRVGQS-EMLSLKTRKLGEVRTVAAASPGYIAARGAPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L +H+ I   D   +    + +L        E      QVNS  +     + G GI
Sbjct: 180 RLEDLARHDCIL--DTNRRVPRRWTFLQDGTERSVEIH-GRFQVNSARAAADLAMAGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              P + + +   +  LV ++E+       V   Y E      K++A  +F   
Sbjct: 237 CYAPRFALAEALRSGRLVPVLEEFGGAVAPVSAVYLEGRSLPRKIRALIDFALE 290


>gi|161521576|ref|YP_001585003.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352258|ref|YP_001947885.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345626|gb|ABX18711.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336280|dbj|BAG45349.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 317

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 124/294 (42%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L VF  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLAVFVAVVEAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    ET    +   +    G LR++  +D G  ++   +      +P 
Sbjct: 66  AGRAFYEACRDIVQAAETALDAVSSDAGPLRGTLRVSVPVDYGAQVVAPAVVALRDAHPS 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++LI +++ +D+  +  D A+R+ + +  S+    +L T      A+P ++     P 
Sbjct: 126 LDVELIANDRVVDLVAESLDVAVRIGR-LADSNYRAVQLGTYEKWLVASPAFVARYGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +    L           +           + +  N+  +     + G G 
Sbjct: 185 DPAALATLPFVMLSTLARPHT--LELESARGGKASVRCNASVVSNTATACRSIALAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LL D+ + D+     LVR++         ++  YP     + K++AF + +  
Sbjct: 243 GLLTDFSIADDVAAGTLVRLLPAWRAAPAGIHAVYPSTRLPSPKVRAFIDAMKA 296


>gi|310765468|gb|ADP10418.1| Transcriptional regulator, LysR family [Erwinia sp. Ejp617]
          Length = 302

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 133/288 (46%), Gaps = 7/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V  + S+T AA+ L L++SS+S++IS LE  +G KL  R  R + +TE G
Sbjct: 6   NLHGMIIFAKVVETLSYTEAAKALGLAKSSVSKEISALEVRLGAKLLQRTTRRIQVTEVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     + H++++  + +++   +PSG LR+   +  G   +   L  F+     + 
Sbjct: 66  MTYYHYCYRILHEVKSADLFIRQFHEEPSGSLRVVAPVTFGCQCIVPVLNRFIASNIHVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ ++   D+ D AI + + +       R L+ I    YAAP YL N     S 
Sbjct: 126 VDLDLTDRPVNFEDDHIDLAIAITRDLPEHR-NYRPLMDIAWGLYAAPDYLINRTAVTSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I F    P       +     +   E R S  + N+ ++++   V  +GIA 
Sbjct: 185 DDLARHECILFRG--PAHTISLPFRKEKQKKDIEVR-SRFRANNSIALLNSAVAKTGIAY 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LP YI +   DN  LV+++ D     +  Y         + +++ F  
Sbjct: 242 LPSYIAREAVDNGKLVQLLPDWEMDIYKSYVLMKSDSFISPRVRLFIE 289


>gi|296116043|ref|ZP_06834663.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977397|gb|EFG84155.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 301

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 132/302 (43%), Gaps = 6/302 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   L+ F ++A +GS    A  + +S +++SR++SG E  +G +L  R +R   LT
Sbjct: 1   MPDEISDLKFFCILAAAGSIAGCARVMGMSPAAMSRRLSGFEARLGTRLVTRTSRHFALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +LH   + + H++E  + E+   +  P G LR+    +LG+ +L G +  F+  YP
Sbjct: 61  AEGQRLHERATRIMHEIEEAEAEVTAKAGIPHGVLRVGVPSELGRKMLAGIVAAFVEKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L L +  +D+  D  D AIR   P     ++   L++      A+P Y      P
Sbjct: 121 DVTVHLTLSDAGLDVIDDGLDIAIRAGMP-PDQDVMTTTLISSRRVVCASPAYSVRKGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L KH+ I          E   +     + I       L  +S   +  + V G G
Sbjct: 180 ATPHDLLKHDCICLLRRQRIFNEWAYYDGKTRKEIHV--TPHLAASSSEVVHDWAVSGQG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IAL   + + D+     L+  +         +   YP       +++ F +F+    R  
Sbjct: 238 IALKVLWDIADDLKCGRLIECLSAYAWEDVVLCAIYPSRTHLPPRVRFFLDFVKRALRQH 297

Query: 298 KF 299
            F
Sbjct: 298 DF 299


>gi|194365488|ref|YP_002028098.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348292|gb|ACF51415.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 300

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 116/266 (43%), Gaps = 7/266 (2%)

Query: 28  HLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQES 87
            ++ S+ S+ I+ LE  +G +L  R+ R ++LT +G +       +  ++   + EL ++
Sbjct: 27  GITPSAASKTIARLEERLGARLLNRNTRSVSLTAEGEQFLERCRRIMVEVAAAERELTDA 86

Query: 88  SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLR 147
              PSG+L+   ++ L   L+   L  F   +P I++ L   ++ +D+  +  D  +R  
Sbjct: 87  HAAPSGRLK--ASLPLVSGLMLPLLSAFAHRFPAIELDLHFSDRLVDVIEEGFDVVVRTG 144

Query: 148 KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNW 207
            P   S L  R L +  +    AP Y  N   P    EL  H  +         +E +  
Sbjct: 145 SP-ADSRLHGRNLGSTRLLCVGAPAYFANRGTPRHPDELGGHACLLHRFPGTGLIERWPL 203

Query: 208 LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVIT 264
            A          +  +  N   +I+   + G GIA LPD+  +D   N  LV I+++  T
Sbjct: 204 QANAAGQDVR-LMPAMTANHLETILHMAIDGHGIACLPDFATRDALGNGTLVSILDEWTT 262

Query: 265 PSFTVYFCYPEALKNTGKLKAFRNFI 290
              T +  +P       +++ F +F+
Sbjct: 263 EQSTFWALWPSHRHLQPRVRVFVDFM 288


>gi|329851256|ref|ZP_08266013.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
 gi|328840102|gb|EGF89674.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
          Length = 302

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L  F  V  + SFT AA++L  +++ +S+Q++ LE E+G  L  R  R +  TE
Sbjct: 4   HINLNRLAYFTAVVETRSFTAAAQRLSTTKAVVSQQVARLEEEIGTTLLIRTTRNVHATE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +  + E     L E +VKPSG LRI  T D G +++   +  F  LYP 
Sbjct: 64  AGLAFYARCITILREAEDAFDALAERAVKPSGLLRITATFDYGISVIVPKIAAFTALYPA 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            ++ L L ++ ID+     D AIR+   +  S+L  R++ +      A+P          
Sbjct: 124 CEVDLSLSDERIDLVSSNIDMAIRVGW-LSDSTLQARRIDSFRQILVASPQMAPAVSHLD 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L+    +    L  +    +N+    D PI     + + +++ L ++     G+G+
Sbjct: 183 SPRALETLPFVANSAL--RHPLHWNFSHGEDDPIAVRLRAAVSIDATLGVLAAVQAGAGL 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++LPDYI      +  L+ ++ D   P   ++  +P A       +AF + +
Sbjct: 241 SVLPDYIAAPLIGSGELIHVLPDWSLPIGGIFVVFPAARYRPAHARAFVDLL 292


>gi|152980333|ref|YP_001353265.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151280410|gb|ABR88820.1| LysR-family transcriptional regulator [Janthinobacterium sp.
           Marseille]
          Length = 293

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 136/299 (45%), Gaps = 19/299 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D L+ F  V  SG+   AA+ L  + S++SR ++ LE ++   L  R  R + LT
Sbjct: 1   MDINSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRALARLEEKLATTLLTRTTRRMELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L      +   L+  +  ++    +PSG+LRI        +++  ++ EF  LYP
Sbjct: 61  DEGRLLLTKARAILAALDEAEESIRVRRQRPSGRLRIDAASPFILHVIVPHVAEFRELYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++L  +++  D+     D AIR+ + +  S+L  R L +  M   A+P YL+    P
Sbjct: 121 DITLELTSNDQIADLLEHRTDIAIRVGE-LTDSTLHARPLRSGAMAILASPDYLRRHGIP 179

Query: 181 LSIQELDKHNLITF-----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               +L +H  + F     G+  P   +   WLAT            +  +S  ++    
Sbjct: 180 KKPADLAQHETLGFLQYENGNSWPLRHDGGEWLAT---------TPAIYASSGETLRALA 230

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           + G GIA L +++ K +     LV I+    T     ++  Y    + + ++  F  F+
Sbjct: 231 LAGQGIACLSEFMTKQDIAAGTLVPILAKYYTGYQRPIHAVYYRNTQLSRRISCFLEFL 289


>gi|24114360|ref|NP_708870.1| transcriptional activator TtdR [Shigella flexneri 2a str. 301]
 gi|30064408|ref|NP_838579.1| transcriptional activator TtdR [Shigella flexneri 2a str. 2457T]
 gi|110806947|ref|YP_690467.1| transcriptional activator TtdR [Shigella flexneri 5 str. 8401]
 gi|24053524|gb|AAN44577.1| putative LYSR-type transcriptional regulator [Shigella flexneri 2a
           str. 301]
 gi|30042665|gb|AAP18389.1| putative LYSR-type transcriptional regulator [Shigella flexneri 2a
           str. 2457T]
 gi|110616495|gb|ABF05162.1| putative transcriptional regulator LYSR-type [Shigella flexneri 5
           str. 8401]
 gi|281602448|gb|ADA75432.1| putative LYSR-type transcriptional regulator [Shigella flexneri
           2002017]
 gi|313648175|gb|EFS12621.1| HTH-type transcriptional activator ttdR [Shigella flexneri 2a str.
           2457T]
 gi|332752732|gb|EGJ83117.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-671]
 gi|332753115|gb|EGJ83499.1| HTH-type transcriptional activator ttdR [Shigella flexneri 4343-70]
 gi|332754693|gb|EGJ85059.1| HTH-type transcriptional activator ttdR [Shigella flexneri 2747-71]
 gi|332765308|gb|EGJ95532.1| DNA-binding transcriptional regulator LYSR-type [Shigella flexneri
           2930-71]
 gi|333000133|gb|EGK19716.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-218]
 gi|333014796|gb|EGK34141.1| HTH-type transcriptional activator ttdR [Shigella flexneri K-304]
          Length = 333

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            ++ V    ++  LV+++ +    S  ++  Y E L  + K  + RNF
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYRELLYRSMKFVSARNF 291


>gi|17987856|ref|NP_540490.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. 16M]
 gi|17983586|gb|AAL52754.1| transcriptional regulatory protein, lysr family [Brucella
           melitensis bv. 1 str. 16M]
          Length = 327

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 128/296 (43%), Gaps = 12/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR    V   G+ + A      S +  S +I  LE  +G++LF R  R LT TE G 
Sbjct: 31  LDNLR----VVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGR 86

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI++
Sbjct: 87  VFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEV 146

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P S +
Sbjct: 147 RLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPE 205

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            L  D+H+ +      P   E +  L T +             +    + Q+ + G GI 
Sbjct: 206 ALLSDRHHCLLL--RFPSSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGGRGII 263

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             P + VK+   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 264 NKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 319


>gi|184157808|ref|YP_001846147.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332876496|ref|ZP_08444263.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209402|gb|ACC56800.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322508123|gb|ADX03577.1| Transcriptional regulatory protein [Acinetobacter baumannii 1656-2]
 gi|323517697|gb|ADX92078.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735354|gb|EGJ66414.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 296

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 130/296 (43%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT 
Sbjct: 1   MDRLDCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLNRTTRQMNLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K ++    +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP 
Sbjct: 61  CGEKFYQHCKVILSEFEWATYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREP 180
           I+I L + ++ +D++    D  IRL     + SL   K++ T   + YA P Y      P
Sbjct: 121 IKIDLFMTDQLLDVNQHKFDLTIRLDG--SAPSLANSKILNTYQRYLYATPEYFNQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL +H  + +          F       + +       +  N+   ++  C+   G
Sbjct: 179 NSLEELKEHKFLIYYQDSRHKKLIFQ---KDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+  +
Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFLTHQ 291


>gi|90580949|ref|ZP_01236750.1| putative transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
 gi|90437827|gb|EAS63017.1| putative transcriptional regulator, LysR family protein [Vibrio
           angustum S14]
          Length = 306

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 127/294 (43%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  +     ++ E      G L I+         L   L +F   +PDI +
Sbjct: 68  GYFLDIKDIFSAISDATDKVLERGA--KGALTISLPPSFAIQWLVPRLTDFNEQHPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +    S L   KL    M    +P  L   +   ++ 
Sbjct: 126 RIKAVDLDEGSLTDDVDVAIYYGRG-NWSGLRADKLYQEFMMPVCSPMLLTGAKPLRTLD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          E  N++   D          +  +    ++Q    G GIAL 
Sbjct: 185 DLKLHTLLH----DTSRKEWKNYVRHYDVQGVNVNQGPI-FSHSTMVLQAAAHGQGIALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   +   LV   ++V+      YF   E   +TG+++ FR+++  KAR
Sbjct: 240 NNVLAQPELEAGRLVCPFDEVLVSKNAFYFVCQERQADTGRIQIFRDWVLAKAR 293


>gi|148258340|ref|YP_001242925.1| DNA-binding transcriptional activator GcvA [Bradyrhizobium sp.
           BTAi1]
 gi|146410513|gb|ABQ39019.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 306

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 115/296 (38%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LR F   AR  SFT AA +L+++Q++IS QI  LE E+GI+LF R  R L LT Q 
Sbjct: 6   SLNGLRAFEAAARHLSFTRAASELNVTQTAISHQIKRLEDELGIRLFVRQNRSLALTPQA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                +    +  L      L          L ++T   L    L   L  F   +P I 
Sbjct: 66  RDYLPLVRAAFDDLRLATERLVRKDNGK--VLTVSTIASLAAKWLLPRLIAFQEAHPGID 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++      +D   D  D AIR  +           L+   +    +P  L+  +     
Sbjct: 124 VRITTSTSLVDFRTDDVDAAIRYGRG-HWPGARAEWLMADELFPVCSPALLQGDKPLRCP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H L+              WL     P+   R S L  +     +Q  + G G+A+
Sbjct: 183 EDLAHHTLLQASGGYDDDWRL--WLTAAGLPVEISRQSSLSFDLLFMTVQAAIDGLGVAI 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V+D+     LV   +  +      Y   PE   +  KL AFR ++   A+ 
Sbjct: 241 GRTAYVQDDIAKGRLVVPFKMALPSDAGFYLVTPEGRTDAPKLTAFRQWLKSAAQQ 296


>gi|170735842|ref|YP_001777102.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818030|gb|ACA92612.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 324

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 126/295 (42%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F  V  +GSF+  A+++H+S S+++R+++ +E  +G+ L +R    +TLTE G 
Sbjct: 13  LGAMRAFVRVVETGSFSAVAKEMHVSTSTVARKVTAIEEALGVALLHRSTHSVTLTEAGH 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+
Sbjct: 73  IYLERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +   D+     D  I   +     +L+  +L        A P YL  C  P +  
Sbjct: 133 DVRLTDNHNDLVAGGFDLDIHEGENYLD-NLVVHRLSRNDSILCATPGYLDRCGRPATPD 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +   +    +    L   D          L  +    +++    G GIA  
Sbjct: 192 DLTHHNCLRY---VHPEGDPRWALVRGDTQHSVLPAGNLVTDHSELLLEATCAGLGIAEF 248

Query: 245 PDYIVKD---NPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFL 292
             ++V+D   +  L  ++      +      +Y  Y    +++ KL+  ++F+  
Sbjct: 249 EIWLVRDLLASGQLEAVLPRYRLQNRLTGEYIYIAYLANRRSSAKLRVLKDFLAE 303


>gi|254250527|ref|ZP_04943846.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124879661|gb|EAY67017.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 307

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 125/298 (41%), Gaps = 12/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  V R+GSF+ AA +L +  +++SR+I   E  +G +L +R  R L  + +
Sbjct: 2   LDLNDLALFVQVVRAGSFSEAARRLRMPANTLSRRIDQFEGHIGTRLLHRSTRKLAPSTE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    +    ++   + +  +    PSG +R+A    L + +    L EF   YP I
Sbjct: 62  GLALFERYAPALDRIFEIERQHADGQE-PSGTVRVAAMAGLFEVIKLEWLAEFYARYPRI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +LD+   D+  +  D A+R+       S   R++    M   A+P YL+    P +
Sbjct: 121 SIDFLLDDTPSDLIAERIDLALRIGIE-TGGSFRVRRIAPDTMILAASPAYLERRGTPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            +EL  H+ +T      + M    W     R   E  I     VN    ++Q C+ G GI
Sbjct: 180 PRELADHDCLTVSSRQGRSM----WRLQGPRGTQEISIDGRFSVNDMRVVVQACLAGLGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+P  +     D   L R++           +   Y         + A   F+  K 
Sbjct: 236 ALVPQVLAAAAIDEGKLARVLPAYQRSGAGLGLQLVYTSRPPLPPAVTAVAEFLLEKL 293


>gi|254235539|ref|ZP_04928862.1| transcriptional regulator, puative [Pseudomonas aeruginosa C3719]
 gi|126167470|gb|EAZ52981.1| transcriptional regulator, puative [Pseudomonas aeruginosa C3719]
          Length = 301

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 71/272 (26%), Positives = 123/272 (45%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    +    +   LE     L
Sbjct: 24  RQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYRQRLERILDDLEAADAAL 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
                 PSG LR++  + L    L   +  FL  YPD++++L+L +   D+  +  D A+
Sbjct: 84  TSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELLLQDGRQDLIAEGIDLAL 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R    +  S L+ R L+ +     AAP YL    +PL  + L +H  I F          
Sbjct: 144 RGSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALREHECIRFS----LSGHA 199

Query: 205 FNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIME 260
             W    DR  I  P     +V+S L++    + G G++L+P   V+       LV ++ 
Sbjct: 200 DRWTFRKDRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPRLYVQAELAEGRLVELLA 259

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D       ++  YP   +  GK + F +F+  
Sbjct: 260 DWKADETAIHAVYPS-RQLAGKTRVFLDFLTE 290


>gi|146305845|ref|YP_001186310.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574046|gb|ABP83578.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 295

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 74/283 (26%), Positives = 129/283 (45%), Gaps = 7/283 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V + GS   AAE L +S S++S+QI  LE   G+ L +R  R LTL+E G+
Sbjct: 4   LKRMALFATVVQKGSMVAAAEVLGMSASAVSQQIRRLEEATGVSLLHRTTRKLTLSEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++    E  +  L E    P G+LRIA  +     +L   L   L  +P + +
Sbjct: 64  QFYESCRQIVELAEQAEQRLAEQRDAPVGELRIAAPVGFSGPVLSEALAPLLSAHPALSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ ID+     D AIR+ + +  SSL+ R +    M   AAP YL     P   Q
Sbjct: 124 RLFFQDEQIDLIEQRIDLAIRVGQ-LDDSSLVARHVADWRMLVCAAPAYLARHVWPTQPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L   + I       + ++         R   E RI+C   N+ L+  Q+ + G G++L 
Sbjct: 183 QLLDLDWIALNTERSQHLQLHGPGGATQRLRLESRIAC---NNILAARQFTLAGMGVSLQ 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           P+  +++      L+ ++ D       ++   P       K++
Sbjct: 240 PEPEIRELLTRGELLALLPDWQLEPIGLHIVTPRRDAQPAKVR 282


>gi|312959458|ref|ZP_07773975.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311286175|gb|EFQ64739.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 302

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L  F V+  +GSFT AA+QL  S+  +S++IS LE +  + L +R  R L+LT  G
Sbjct: 3   EMDDLAAFAVLIEAGSFTVAAQQLGCSKGQLSKRISQLEAQFCVVLLHRTTRRLSLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +  +++  +  L       +G +R+   + LG+    G L EF   YP +Q
Sbjct: 63  AALLPQAQALVAQVDRARQALARLKDDLTGPVRMTVPVSLGETFFDGLLLEFSKQYPQVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L+N   D++ D  D  +R    + +  L+ + L+  H    A+P YL+   EP + 
Sbjct: 123 IELELNNSYRDLARDGFDLGVRAGA-LDNERLVAKPLLAWHEMTCASPAYLEQHGEPQTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +       +    ++    + R            N Y  + +  ++G+GIA 
Sbjct: 182 ADLAAHRCLLNSHYSGREEWLYHQRHELLR---VKVSGTFASNHYNLLKKAALVGAGIAR 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP Y++     +  L  ++ D  T S  +Y  +P       + +   +++  
Sbjct: 239 LPSYLLPAELADGRLRCLLRDYQTRSLPMYLVHPYQGGLPRRTQVLADYLVE 290


>gi|309779713|ref|ZP_07674471.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308921512|gb|EFP67151.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 306

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 123/291 (42%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  +   GS   AA   +L  ++++R++  LET +G +L  R AR L  T +G 
Sbjct: 2   LDDLALFVSIVDHGSLQAAARHANLPPATLTRRLQKLETALGCQLLLRSARSLKPTPEGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L  T   L +   +  G LR+   ++L + LL      F+  +P+I++
Sbjct: 62  LYYEQCRPLLTALAQTTATLDDDLNQVKGTLRVLAPLNLSRGLLAPAYASFMAAWPEIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N++ D+    AD AIR+ +      L QR+L  I M   A+P Y+     P    
Sbjct: 122 ELSLSNRNEDVWRHGADLAIRVGQQ-DDPKLRQRRLGVIGMVLVASPAYVAEHGAPTHPH 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H L+    L        +   T++            +N     +     G G+   
Sbjct: 181 ELQAHRLLVSSPLSTWRFTSPDGEETIELQ----PHGRCDLNDIELGVTLAETGLGLLYC 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +     +   LVR++ D  TP   +Y  +P+  +   K++    ++  
Sbjct: 237 PRTLCHQALEAGRLVRLLPDWRTPQRPIYAVWPQ-QQLPRKVRTLLEYLAA 286


>gi|300721474|ref|YP_003710749.1| putative LysR family transcriptional regulator [Xenorhabdus
           nematophila ATCC 19061]
 gi|297627966|emb|CBJ88515.1| putative transcriptional regulator (LysR family) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 300

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D     +F+ +   GS   AA+ LHL  S  SR+++ LE ++  +L  R  R L+LT
Sbjct: 1   MNHDLTLWHLFFRIVERGSLIKAAKDLHLDPSVASRRLAALEHQLKAQLINRSTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  +     +  +++    ++  ++    GK++I   ++ G++ +   L  F L  P
Sbjct: 61  AAGTVAYEQMRPLLDEIDGVLSDI--NNKSLVGKIKITAPVNFGEHYVTQWLTLFQLQNP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI   L+L ++ +D+  +  D AIR+ + + +S+LI +KL  +     A+P YL     P
Sbjct: 119 DITFDLVLSDQCLDLRQEGIDLAIRIGE-LPASTLIAKKLGNMSGVLCASPEYLLKHGTP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              Q+L+ H  + +   + +         + DR +    +S    +N+  +I Q    G 
Sbjct: 178 KHPQDLNYHKSVIYS--LRQNTSPTRLQLSRDRVVEHVELSGSFYLNNVGAIYQAVCHGV 235

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI   P ++  +   N  LVR++ D   P+  ++    +      ++ A  ++I L
Sbjct: 236 GIHAGPAWLFNEAILNKKLVRLLPDWQLPTLPIHLLRMKNHYVPSQISALIDWIVL 291


>gi|182677572|ref|YP_001831718.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633455|gb|ACB94229.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 304

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 132/292 (45%), Gaps = 12/292 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            +F V A  GSF+ A  +L+LS+SS+ + ++ LE  +G++LF+R  R   LTE+G   + 
Sbjct: 8   HIFLVCADEGSFSAAGRKLNLSRSSVGKTVARLEDMLGVRLFHRSTRHQALTEEGKIYYE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                +++L+  +         PSG LR+   + LG++ +   L +F   + D+++ L L
Sbjct: 68  HARRAHNELDRARQIFASGHRSPSGILRVTAPMSLGRSCIGPLLLDFTSRFSDLKLVLSL 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +D+  +  D AIR+   I ++ +  RKL T  M  YA+P YL     P S  E D+
Sbjct: 128 NDRPVDLIDEGFDLAIRVGATINTTGIAGRKLSTQAMRLYASPSYLGARGTPKSCGEFDQ 187

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL---QVNSYLSIMQYCVLGSGIALLP 245
           H ++ +G           W            +  +   Q +    +      G GIA LP
Sbjct: 188 HQILAYGR-----GRTLRWRFAGVGGQALQDVEGMSQAQFDDLDLLANATAQGFGIASLP 242

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++         LV  ++      + +   +P++     K++   + +    
Sbjct: 243 TWLAHPRALRGELVP-LKAFNLKPYDISALWPQSHFMPPKVRYAIDHLVQAL 293


>gi|209549387|ref|YP_002281304.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535143|gb|ACI55078.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 304

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 131/298 (43%), Gaps = 12/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R+   V  +GS +  + +L+    S+SR+++ LE  +G  L  R +R L LT+
Sbjct: 1   MDRLEAMRILLAVVDAGSISAGSRRLNAPLPSVSRKVAELERHLGANLVVRTSRNLQLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++   ++  +         P G L I   I+ G   +      F+  YP+
Sbjct: 61  AGRDYVDAARKIIADIDEAERRASGEYQTPRGALTITMPIEYGSRYVLPVALSFMDKYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+  ++ +D+  +  D AIRL   +  SSL   K     +   A+P YL    EP 
Sbjct: 121 VSLKLLSLDRTVDLVSEQVDIAIRLGD-LADSSLHAVKTGEFRLLTCASPAYLARHGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L   + I F          F W   ++ +P+     + L+VN+  + +   V G+G
Sbjct: 180 RPGDLIDRDGIFFNKPA------FFWTFDIEGKPMEAMPRNRLEVNTAANCVAAAVDGAG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY V D   +  LV I+ D   P   ++  Y        K++AF ++   + R
Sbjct: 234 IARLFDYQVPDQLASGALVPILRDFDGPPQPIHIVYARQGILALKVRAFVDWALPRLR 291


>gi|84389440|ref|ZP_00991246.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84376955|gb|EAP93828.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 298

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 14/299 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA   SFT AAE L +S+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFVEVANCASFTQAAEHLDMSRLQVSRHVQEIEGWLKQRLLHRTTRKVSLTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++ H+    ++     +   SG +RIA  I L Q++L   +++F  L+P 
Sbjct: 61  AGEIALQRCEKILHETAELEVTALNQTDALSGTIRIAAPIGLTQHMLLSVVEQFTELHPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L   +    +  D  D A+R        SLI RKL+ I     A+  YL    EP 
Sbjct: 121 ITVELFASDHFAQLVDDRIDIALRYTDQ-PDDSLIARKLMEIDSVVCASQDYLDKHGEPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++ L +HN   F  L     +        ++         ++ N    + +    G G+
Sbjct: 180 TVEALRQHNC--FRHLSVSKWD----FVKDNQHYSVEVSGTIKANDVGVLARAAQHGKGV 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             LP  +         L RI++D ++PS  ++  Y         ++ F +F    A  W
Sbjct: 234 VRLPCDLANPLITEGKLKRILDDFVSPSSVLWAVYLSRSYQLPVVRQFIDF---AAEAW 289


>gi|134293273|ref|YP_001117009.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136430|gb|ABO57544.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 312

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 132/294 (44%), Gaps = 5/294 (1%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D+   + +F  V  SGSFT AA Q++ S + ISR ++ LE ++G++L  R  R + +
Sbjct: 1   MKMDFFAAIGIFVRVVESGSFTAAARQVNGSTAQISRAVAFLERQLGVRLLNRTTRHIGM 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +  +    +   +E    E +    KP GKLR+     LG   L   + ++ +  
Sbjct: 61  TESGERYFKRAKSILADIEHASAEARNRLAKPYGKLRVHAMPSLGLRYLTSAMVQYQVSN 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD++I+L L  +  ++  D  D ++     + +SS + + L   +    A+P Y++    
Sbjct: 121 PDVKIELTLSERFPNLIEDGIDVSLMATADLPTSSYVSKALGGNYSVLVASPDYVQRSGM 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P ++ +L  H+ +T  +      E +             + S  QVN   ++    + G+
Sbjct: 181 PSTVTDLAAHSCLTL-NAPNSAPEKWRLHGPDGEHAHLVQASPFQVNMPDAMRFALLAGA 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  L  +   D+     LVR++ +    + TVY  Y        K+  F   +
Sbjct: 240 GIGPLTLHSAIDDLRRGTLVRVLPEYRVNALTVYALYTSKRYLDAKVSTFVQHL 293


>gi|262198989|ref|YP_003270198.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262082336|gb|ACY18305.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 306

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 127/287 (44%), Gaps = 6/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  +  +GS   AAEQL    SSISR+++ LE  +G +L  R  +G   TE G + ++
Sbjct: 11  RLFLRIVEAGSLKAAAEQLGTDPSSISRRLAALEARLGQRLLRRSTQGSRPTEAGERYYQ 70

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++  + +  +  +     +P G+LR+    + G   +   L++ +  + ++ ++L L
Sbjct: 71  GLVDIIAQQDALEAAVGRLRDEPQGRLRVTAPPEFGVRFVVPVLEQLVRAHAELSVELSL 130

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
                +++    D A+R+   +  SSL  R+L ++     AAP YL+    P ++ +L  
Sbjct: 131 GTGFSNLAEQGLDVAVRIG-TLPDSSLRARRLGSVPRLLVAAPSYLETHGTPRAVPDLAA 189

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  +++       +                      VNS  ++++    G+G+   P + 
Sbjct: 190 HRFVSYA--TDNGVSTLRLSDASGHQHELQVRPYFVVNSIATLVRMVEDGAGMIYAPRWA 247

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +   D+  +V ++ D  +  F +   Y        K++AF + +  
Sbjct: 248 FERALDDGRVVELLADHSSQPFPLQAVYLGRHYVPAKIRAFIDAMAA 294


>gi|239814035|ref|YP_002942945.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800612|gb|ACS17679.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 309

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 6/273 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L ++  ++S+ ++ +E+  G+ L  R  R ++LT +G         +  +++  +  L
Sbjct: 27  RELGITTPAVSKHLALMESRAGVLLVNRSTRRMSLTPEGELYLEHARRILGEIDGMEELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             S   P G+LR+  T+  G++ +   +  F+  +P +++QL L       S D  D  +
Sbjct: 87  GVSRATPRGQLRVNATLGFGRSHVAPLISRFVRKHPAVEVQLQLSVNPPAPSEDLFDVCV 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R   P   S ++ R + +      A+P YL     P    +L +HN I    G+      
Sbjct: 147 RFGAP-PDSRVVARHIASNRRLLCASPAYLAARGMPKVPNDLARHNCIGIRQGEEAYGVW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIM 259
              +      R         L  N     + + + G GI +  ++ +     N  LV+++
Sbjct: 206 RLTSGRGRHARTESIKTRGSLATNDGEIAVNWALEGHGILMRAEWDINRYLRNGRLVQVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               TP   +Y  YP+  +   +++AF +F+ L
Sbjct: 266 PQYFTPDADIYAVYPQRHQLAARVRAFVDFLAL 298


>gi|311106740|ref|YP_003979593.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761429|gb|ADP16878.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           111 [Achromobacter xylosoxidans A8]
          Length = 302

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 134/290 (46%), Gaps = 4/290 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   SFT AA ++ +S++++S+ +  LE  + +KL YR  R ++LTE+G +L+
Sbjct: 9   LAWFAHVAHHRSFTKAAAEMGVSRANLSQNVKALERRLNVKLLYRTTRDMSLTEEGQRLY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V       +E T   + +   +PSG +R+ T+    + LL  +L+EF   YP +Q++L+
Sbjct: 69  DVWYPALIAVERTVRTMHDMRDEPSGLVRVNTSRVAAKTLLDPHLQEFCTRYPRLQLELV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+   +I  +  D  IR+ + +    +       + M   A P Y +    P++  +L 
Sbjct: 129 MDDALANIVAEGCDAGIRIGESLAEHMVAVPITSALEMAVVATPAYFEQHGLPVTPADLS 188

Query: 188 KHNLITFGDLIPKCM-EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +HN + F          +F                 +  N    +++  + G+G+    D
Sbjct: 189 RHNCLRFRQTRGAIHPWEFTSPEAGGHTFTVEPQGRIITNDDDGMIRAALQGAGLMQHID 248

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             V+   ++  LVR++ +   P    Y   P   +   K++A  +F+  K
Sbjct: 249 IAVQQHLESGALVRVLHNWCKPFAGFYIYAPTRAQMPAKVRALIDFLVEK 298


>gi|288935416|ref|YP_003439475.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890125|gb|ADC58443.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 303

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 130/295 (44%), Gaps = 10/295 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  + ++ +++F  +  +GSF  AAE L + + ++++ +  LE E G++L  R  R L L
Sbjct: 1   MQMNLFENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G + +R +  +  + +              G+LR+   I   + L+  +L +F   +
Sbjct: 61  TPEGEEFYRRSKPLLSQADDLLESF-APDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAH 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+++I L   +   D+  D  DC +R+   ++    + R L  + +   A+P YL     
Sbjct: 120 PEVEIVLSSSDVRRDMLRDGLDCLLRVGD-LEDGDYVARSLGEVALTTCASPGYLARYGV 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P ++++L  H  +    +     +   W       I +  I   L +++        + G
Sbjct: 179 PATLEDLQSH--LAVNWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDNSEVFTAAGLAG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+     + ++   D+  LV I+ D   P   +   YP     + K++ F +++
Sbjct: 237 LGMLQGMRFFLQPYIDSGQLVEILPDFPAPRRPLSLLYPH-RHLSHKVRVFADWL 290


>gi|256823293|ref|YP_003147256.1| LysR family transcriptional regulator [Kangiella koreensis DSM
           16069]
 gi|256796832|gb|ACV27488.1| transcriptional regulator, LysR family [Kangiella koreensis DSM
           16069]
          Length = 301

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 125/293 (42%), Gaps = 12/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AAE+L ++Q++IS QI  LE  +G++LF R  R L LT++G 
Sbjct: 8   LNSLRAFEAAARHLSFTKAAEELFVTQAAISHQIKALEDFLGVQLFIRRNRKLLLTDEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ KL     +++      +G L +          L   L EF  L+P+I++
Sbjct: 68  LYWPKIRDIFEKLVNATEQVKAQGA--TGSLTVCVIPTFATLWLIPRLAEFGELHPEIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + ++D   +  D AI   K  +   L    L   H+    +P + +  +   + +
Sbjct: 126 RIKASDVEVDFVREDIDIAIYYGKG-EYDGLCCDVLFEEHLTPVCSPDFPQK-KNLKTPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WL + +   G         +    ++Q    G GIA+ 
Sbjct: 184 DLLNVTLLH----DATTEEWRTWLKSAEV-TGVNLDHGPVFSHSGMVLQAARHGQGIAMG 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + +   +   L+   + V+   ++     PE   +  K+ AFR ++  K 
Sbjct: 239 HSVLSQMDIETGRLIAPFDIVVDSGYSYDLVCPENSYDRPKVVAFREWLLSKV 291


>gi|209515936|ref|ZP_03264797.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503594|gb|EEA03589.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 308

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 121/275 (44%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMEQRAGVVLVNRTTRRMMLTPEGELYLEHARRILDEIDELAELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +   P G LR+  T+  G++ +   +  F+  YP + +QL L      ++ D  D  I
Sbjct: 87  GSAKKTPKGLLRVNATLGFGRSHIGPAISRFVARYPQVSVQLQLSVTPPPLTDDSFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L        AAP YL     PL+  +L +HN I    GD      
Sbjct: 147 RFGEP-PDTRVVARRLAPNRRLLCAAPSYLAAHGMPLTAHDLTRHNCIGIRQGDQAYGVW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
              +      +         L  N     +++ + G GI +  ++ ++    + +LV+++
Sbjct: 206 RLTSGRGAARKTEAVRIKGTLTTNDGEIAVKWALEGHGILMRAEWDIRQYLADGSLVQLL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D  TP+  ++  Y    + + +++AF  FI  + 
Sbjct: 266 PDHDTPNADIFAVYSPRHQMSNRIRAFVEFIAREL 300


>gi|167835507|ref|ZP_02462390.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 310

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 121/299 (40%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT+
Sbjct: 1   MDQLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     SGK+R+++T D G+N L   L EF   YPD
Sbjct: 61  EGRLYLNCCRQALRALDDADAMLQEGRNVVSGKVRLSSTADFGRNQLLDWLDEFNARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   +   +   ++  D  D AIR   P    +LI R+L        A+P ++     P 
Sbjct: 121 VTFSVTASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCASPAFVDKYGSPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 EPLDLARFPCNVITVASGPINVWRFTRGDDTQTYTVPLATAHETNDGGLTREWTIRGYGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           AL   + +  +     L  ++ +       ++  Y        +++   +F+  + AR+
Sbjct: 240 ALESIWDIARDVRAGRLKVLLPEWRHHDAPLHAIYHSKRYMAPRVRVLLDFLVERFARE 298


>gi|330819601|ref|YP_004348463.1| putative transcriptional regulator, LysR family [Burkholderia
           gladioli BSR3]
 gi|327371596|gb|AEA62951.1| putative transcriptional regulator, LysR family [Burkholderia
           gladioli BSR3]
          Length = 297

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR  SFT AA QL +SQS++S  I GLET +G++L  R  R +  TE G
Sbjct: 5   NFSDLLAFLAVARERSFTKAASQLGVSQSALSHTIRGLETRLGVRLLTRTTRSVATTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +V    + ++E+    L E   KP G +RI  T    + +L   LK  L  YP ++
Sbjct: 65  ERLMQVAGPRFDEIESELNALSELRDKPVGLIRITATDHPVETILWPRLKPLLADYPGLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ +D    DI     D  +R    + +  +  R    + M    +P Y      P S 
Sbjct: 125 IEMSIDYNLSDIVAQRYDIGVRFGDQVANDMIAVRIGPDVRMMIAGSPEYFARHPAPKSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W     +     R+   L  NS   ++   + G G+ 
Sbjct: 185 QDLLDHACINL--RLPTRGSLYAWELRKGKHDLLVRVDGQLIFNSTPQMLAAALEGYGLV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP+  +        L  ++++        +  YP   +++  L    + +  +
Sbjct: 243 YLPEDQLMPQVRAGRLKCVLKEWGATFPGYHAYYPSRRQSSRALSLVIDALRHR 296


>gi|325527769|gb|EGD05043.1| putative HTH-type transcriptional regulator YcjZ [Burkholderia sp.
           TJI49]
          Length = 298

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 119/291 (40%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F +VA   SFT AA +L +SQS++S+ I GLE  + ++LF R  R ++LTE G
Sbjct: 5   NLKDLSAFVMVAEERSFTRAAARLGVSQSALSQTIRGLEARLDLRLFARTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         +++    E+ E   KP+G +R+       Q++LQ  +  FL  +P I+
Sbjct: 65  ERLLNRVGPAMSEIDAGLEEIGELVGKPTGVVRLTADEFAVQSVLQPAIARFLPDHPGIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++  D    DI     D  +R  + +    +  R    I M    AP YL     P   
Sbjct: 125 IEITTDYGLADIVDGRFDAGVRRGRLVAKDMIAVRIGPDIPMTVVCAPAYLDRHPAPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I     +P   E   W+ T        ++   L   S   +    + G G+A
Sbjct: 185 ADLVSHACINL--RLPTHGEFLPWIFTRAGNEQRIKVDGPLVYTSIAPVRDAALAGLGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP   V+    +  LV ++          +  Y      T       + +
Sbjct: 243 YLPVEYVRTALASGQLVEVLGAWRKTFEGYHLYYANRRNATSAFSLLVDAL 293


>gi|260776949|ref|ZP_05885843.1| putative transcriptional regulator LysR family [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260606615|gb|EEX32889.1| putative transcriptional regulator LysR family [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 297

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 140/300 (46%), Gaps = 15/300 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L +   V  SG F+ AAE L++  + ISR +S +E ++G+ +  R  R + LT
Sbjct: 5   MRTRSDELEMLLAVVDSGGFSAAAEMLNIQVARISRAVSKVEKQLGVSILNRTTRRVELT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G        +  H +   + +L   S +P GKLR+        + L   ++ F   YP
Sbjct: 65  QEGRTFVDSVRKGLHIIHQAEEDLISGSERPRGKLRVDAASPFVFHQLVPLIQSFKDTYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I++++  +   +D+     D AIR+ + ++ S+L  R L    +   A+P YL++   P
Sbjct: 125 EIELEITSNEGFVDLLEQRTDVAIRIGQ-LKDSTLHARPLGKSELFIVASPQYLESSGAP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H LI F    PK +  +           EP I     ++  ++ Q  +  +G
Sbjct: 184 RTTSELQSHQLIGFTS--PKVLNQWPL---KGVDAIEPDI---TSSNGETVRQLALASNG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L  ++V+++     LV +++D     T    V   Y ++     ++ AF +FI  K 
Sbjct: 236 IACLSGFMVREDIKQGRLVSLLDDAKRLDTGREQVSAVYYKSSAVARRISAFIDFIQPKL 295


>gi|227822779|ref|YP_002826751.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227341780|gb|ACP25998.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 309

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 129/299 (43%), Gaps = 4/299 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   A  GSF+ AA +L L+ +++SR ++ LE+ + ++LF R  R L LTE G
Sbjct: 3   TLANLESFVRSAELGSFSSAARRLGLTPAAVSRNVAALESNLKLRLFQRSTRSLALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      +    L+    E      +P+G LR++ +   G   +   L EF+  YP I+
Sbjct: 63  ERFLHSVRDHLESLQGAIAEASNEQAEPAGVLRLSMSPTFGIEYILPKLPEFMSRYPLIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            + + +N+ +D+  +  D AI     +    +I + L + H+ A A+P Y+++   P   
Sbjct: 123 PEWMFENRQVDLIAEGYDAAIGGGFELT-PGIIAKTLASAHIIAVASPSYMQDRVPPHDP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L + + I    +    +  +                 + VN   ++    VLG G+A+
Sbjct: 182 SGLTELDGIVMRSMRTGRIRQWQMRNVAGEEQSAALKERIVVNDPAAMRSAAVLGLGVAM 241

Query: 244 L--PDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +  PD +   +N  LVR+       +  +   Y        K + F +FI    +  ++
Sbjct: 242 IAKPDALPYLENGELVRLTPGWYADAGPISIYYANRTLLPTKTRVFIDFIGEVFQRERW 300


>gi|221210864|ref|ZP_03583844.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221169820|gb|EEE02287.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 317

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 124/294 (42%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L VF  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLAVFVAVVEAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    ET    +   +    G LR++  +D G  ++   +      +P 
Sbjct: 66  AGRAFYDACRDIVQAAETALDAVSSDAGPLRGTLRVSVPVDYGAQVVAPAVVALRDAHPS 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++LI +++ +D+  +  D A+R+ + +  S+    +L T      A+P ++     P 
Sbjct: 126 LDVELIANDRVVDLVAENLDVAVRIGR-LADSNYRAVQLGTYEKWLVASPAFVARYGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +    L           +           + +  N+  +     + G G 
Sbjct: 185 DPAALATLPFVMLSTLARPHT--LELESARGGKASVRCNASVVSNTATACRAIALAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LL D+ + D+     LVR++         ++  YP     + K++AF + +  
Sbjct: 243 GLLTDFSIADDVAAGTLVRLLPAWRAAPAGIHAVYPSTRLPSPKVRAFIDAMKA 296


>gi|227823017|ref|YP_002826989.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227342018|gb|ACP26236.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 299

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 139/293 (47%), Gaps = 9/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + VF   A +G F+ AAE+L+LS+S++ + I+ LE  +G++LF+R  R  +LTE+G 
Sbjct: 4   LNGIPVFVEAAEAGGFSAAAERLNLSRSAVGKTIARLEQRLGVRLFHRTTRAQSLTEEGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +   ++ T +  L+    +  G+LRI+  +  G+  +    ++ L  +P + +
Sbjct: 64  LFYDSCQKALGEIRTAEALLESGRQEIRGRLRISMPVLFGRQCVAPLFRDLLRRHPHLDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  +++ +D+  +  D A+R       S L+ R +    M   A+P YL     P ++ 
Sbjct: 124 DLSFNDRVVDLLDEGFDLAVRNGSSGNDSGLMTRAVAEQRMTVCASPTYLAARGAPQTVG 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIA 242
           EL  H  + +     +  +   W   V+    E  +  + L+++   +I      G G+A
Sbjct: 184 ELAAHTGVVY----YRGGQQRPWSFPVEGRTSEAILPNTRLRLDDLAAIADAAAEGLGLA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP ++V++      LVR++ D     F V+  +P       KL+   + +  
Sbjct: 240 WLPCWLVRERVQRGELVRVLTDRPGLVFKVHAVWPRTRLPLPKLRLAIDALAA 292


>gi|83649144|ref|YP_437579.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83637187|gb|ABC33154.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 301

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 130/295 (44%), Gaps = 10/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + L VF+  A  GS T AA +L ++ ++ S  I  LE  +   LF R  R L LT +G
Sbjct: 3   SINDLTVFHQTALHGSLTAAARELDITPAAASAAIKRLEQSLDTALFVRSTRSLRLTGEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +      + L+T + EL     +  G LRI+ + D G+NLL   L EF   +P++ 
Sbjct: 63  ESFLQHCRAALNALDTGRRELLAKKGEIGGTLRISASSDFGRNLLMPWLDEFQTQHPNLV 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L ++  DI+ +  D A+R   P   S+ +   +V        +P Y +   +PL+ 
Sbjct: 123 LRLELTDRVADINRENVDIALRYGAP-PDSNHVAFNIVRTRRIICGSPAYFERYGDPLTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA- 242
           ++L  HN + +  L+ +   D       +R I          N   ++ ++ V G G+A 
Sbjct: 182 EDLQNHNCLLY--LVDERAYDQWGFHDGERRITVNVNGDRISNDAEAVHRWAVAGVGLAN 239

Query: 243 --LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +L   + +D  +  +   +        ++Y   P   + T      R+F+  K
Sbjct: 240 KSML--DMCQDLLHGRVRTTLTQYACAEISMYLICPGKKQVTPAALLLRDFLREK 292


>gi|311694568|gb|ADP97441.1| transcriptional regulator, LysR family protein [marine bacterium
           HP15]
          Length = 277

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 119/270 (44%), Gaps = 9/270 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +S  +++R I+ LE  +G++LF R  R + LTE G++  +    +  ++E  +  L    
Sbjct: 1   MSAPAVTRAIAQLEGSLGVRLFNRTTRRVRLTESGNRYFQDAKRILEEIEEVESALLGIY 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
            +P G L +   +  G+  +   L EFL  +P+IQ++    ++  +I  +  D AIR+  
Sbjct: 61  REPKGILSVTAPVLFGRKYIVPILIEFLDRHPEIQVKAAFYDRVSNILDEGLDVAIRIGN 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            ++ SS    ++  +      +P YL+    P    +L  H +I    + P       W 
Sbjct: 121 -LKDSSQFAVRVGNVQKVVCGSPDYLRKHGLPNHPADLADHQIIQSSAVEPSTTW---WF 176

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITP 265
            + +          LQ N   S +     G GI  L  Y V +     +LVRI+++    
Sbjct: 177 ESSEGKTSVRVSPRLQFNQNDSAISAVKSGYGITRLMSYQVGEEFQTGSLVRILQEHEPE 236

Query: 266 SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              +   Y E L+ + K+++F +    K R
Sbjct: 237 PIPINIVYLEGLRASAKIRSFVD--LAKVR 264


>gi|258544946|ref|ZP_05705180.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
 gi|258519866|gb|EEV88725.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
          Length = 303

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 124/296 (41%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L VF    + GSF+ AA  L+++    S+Q++ LE  +G+ LF R+ R L LT++G  
Sbjct: 7   DDLAVFLQTVQCGSFSAAARALNVAPKVASKQVARLEAALGVALFTRNTRNLRLTDEGEA 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V   L   +   Q +     G +R+      G+  +   + +F   YP +   
Sbjct: 67  LRDKARSVLDGLAEMRELAQGADGM-RGMIRLTAPAPFGRKYVAAAVADFSRRYPQVGFS 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++  ++     D AIR+ + +  S LI R++        A+P YL     P S  E
Sbjct: 126 LCLSDEVCNLFAGNFDLAIRMGE-LADSRLIARRIAVNRRILVASPAYLAEYGCPQSPAE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + F    P    D   L   D          L  +S   +  +C+ G GI+L  
Sbjct: 185 LSEHRCLRFA--YPGLAADSWTLRNGDAEAVVRVSPHLSSDSGEVLHAWCMAGLGISLRE 242

Query: 246 DYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + V    +N +L R++ D  TP   +            ++  F  F+  +   W+
Sbjct: 243 TWDVCEALENGSLRRVLPDWQTPPGGISIVRVRREPTPQRILRFSEFLIAR---WQ 295


>gi|196233604|ref|ZP_03132445.1| transcriptional regulator, LysR family [Chthoniobacter flavus
           Ellin428]
 gi|196222274|gb|EDY16803.1| transcriptional regulator, LysR family [Chthoniobacter flavus
           Ellin428]
          Length = 306

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 4/289 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   LR F  +   GS +  A +L +SQ ++SRQ+  LE   G  L  R    + LT  G
Sbjct: 6   NLSLLRAFVCIVECGSISAGARRLKISQPTLSRQLRTLEDHCGAPLLQRDTHAMCLTPIG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +    E  +  L++  ++ SG LR+  TID GQ ++   L  FL L+P + 
Sbjct: 66  RSLLADARTMLAHAEEAEQRLRQDQMELSGHLRLFATIDWGQWVVTPMLSSFLQLHPRVT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +L L N+ + +  +  D  I L   I   S++ R    I  H  AAP  +K        
Sbjct: 126 AELALTNRPLHMLREGCDIGI-LPGKITDESVVARPAGMIGFHLVAAPSLIKKHPVAKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L     I+         ++             P    L      S+ +    G G+AL
Sbjct: 185 ADLKSWPWISISGFQFWSSKEVTLAGRGGVEQTLPISPILISEGVTSLREAARTGLGLAL 244

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +PD++++++     L  ++         ++  Y        ++ AF +F
Sbjct: 245 MPDWLIEEDLRSKHLAHVLPQWRPKDLPLHVVYAGQRLLPARVSAFIDF 293


>gi|254467582|ref|ZP_05080991.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206684330|gb|EDZ44814.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 302

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 131/296 (44%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +R F  V   G+ + AA  + +S +  S +IS LE  + ++LF R  R L  TEQG+
Sbjct: 4   LDNIRTFVRVYELGNMSAAARDMRISAAVASSRISQLEDHLNVRLFQRTTRLLNPTEQGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   ++  + ++   +  P G L +A  + LGQ L+   + +F   YP I I
Sbjct: 64  LFYHGAVKILEAVDEAEADISSVTQTPRGTLYVAAPLGLGQRLIAPAVPKFNEAYPLISI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +D++ +  D A  L  P + S+L  RK+        AAP Y++   +P + +
Sbjct: 124 RLRLSDRKLDLAAEGLDAAFFLGVP-EDSNLRIRKIADCPRVLCAAPEYIRQRGQPKNSE 182

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL  D H+ +      P   E    L + D           + +    +  + + G GI 
Sbjct: 183 ELKTDAHDCLNL--RYPGAPEFQWPLRSRDGVKRVTVTGPFESDHGDVLTSWALDGHGII 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L P + + ++     LV ++ +       +   Y        K++ F +F+    +
Sbjct: 241 LKPVFEISEHLASGRLVPVLTEEPPIPIQMACLYVHRRHQDPKVRLFMDFMVDHIQ 296


>gi|296315216|ref|ZP_06865157.1| transcriptional regulator, LysR family [Neisseria polysaccharea
           ATCC 43768]
 gi|296837853|gb|EFH21791.1| transcriptional regulator, LysR family [Neisseria polysaccharea
           ATCC 43768]
          Length = 296

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 134/295 (45%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L  F  +A++ SF  A + L +S S++S  +  LET + ++L  R  R ++LTE G
Sbjct: 3   NFNELNYFLTLAQTQSFVKAGQLLGISSSALSHSMKNLETRLNLRLLNRTTRNVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S +Y  +      L +    PSG +RI       + +L   LK  L  YP I+
Sbjct: 63  QQLFDQLSPLYQAINHEVDALNDFLNTPSGLIRINAPTLAAEAVLYPKLKPILNQYPKIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++D++  DI  +  D  +RL   +    +       + M   A+P YL     P +I
Sbjct: 123 LEIVVDDRWADIVKEGFDMGVRLGNDVAKEMVAVPISAPLKMALVASPDYLAQHGSPKNI 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L +H LI    L  +   +  W     +  I     S   +N++L  +Q    G GIA
Sbjct: 183 DDLQQHRLIG-AKLSAEHGTEMQWEFKYKKELITFTPKSQFSINNHL-RLQAVSDGLGIA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +    V D   + +L+ ++ +       +Y  YP    ++   +   + + +KA
Sbjct: 241 WIAHMSVADALNSGHLIELLPEYAMTYEPLYLYYPSRRGHSNVFRLIVDALKVKA 295


>gi|311106866|ref|YP_003979719.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761555|gb|ADP17004.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           118 [Achromobacter xylosoxidans A8]
          Length = 299

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 121/293 (41%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D++ L  F  VA   +F  AA+++ +S+S++S+ I+ LE+ +G+ L  R  R ++LT
Sbjct: 1   MDADFNALATFVFVAEEKNFRAAADRIGVSRSAVSQTIARLESMMGVALVRRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +     + T           P G+LR+  +    + L    L  F    P
Sbjct: 61  EAGERLFAEVAPALADMRTAFEATVNLQGPPRGQLRLTVSSIAERFLSGAMLSTFSQANP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ+ + + +++ DI  +  D  +RL + I+   +    +         AP +      P
Sbjct: 121 EIQLDVTVTDEEFDIVAEGYDAGVRLGEVIEQDMIAIPIVGDERQMVVCAPAFRDRYGMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  ++L ++  I +    PK +      A   +         +  N    +++  V G+G
Sbjct: 181 MHPRDLPRYRCIGWRP-APKAVPYRWEFAEDGKDFSVQVEPEITTNDMALMIKLAVAGAG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I    +   +       L+ ++++        Y  YP       KL+A    +
Sbjct: 240 ITFGMEESFRPTIARGELISLLDEFCPTFPGFYLYYPSRRNIPPKLRALIEHV 292


>gi|170701828|ref|ZP_02892759.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133245|gb|EDT01642.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 297

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 135/295 (45%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L VF  VAR  SFT AA +L +SQS++S+ +  LET +G++L  R  R ++ TE G
Sbjct: 5   NLNDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLETRLGVRLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    ++E     + +   KP+G +RI  T      ++   L+  L  YPDI+
Sbjct: 65  EELFQAVAPRIDEIEMKLAAVSDFRDKPAGVVRITATEHPIDTIIWPKLRRVLPDYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D    +I  +  D  +R    +    +  R    I M   A+P YL   + P + 
Sbjct: 125 VELSVDYGLSNIVEERYDIGVRYGDQVAKDMIAVRISPDIRMTMVASPAYLDGRKPPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ +T      K +  + W     R   + R+   +  N+   ++Q  + G GIA
Sbjct: 185 QDLLDHDCVTLRLATAKGI--YAWELKKGRNEIQARVNGRITCNTQPHMVQAALDGFGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + IV D+     L  +M D        +  YP   + +       + +  +A
Sbjct: 243 FVTEDIVLDHVRSGQLRIVMPDWCPVFPGYHAYYPSRRQASRAFSIVIDALRHRA 297


>gi|83646247|ref|YP_434682.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634290|gb|ABC30257.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 299

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 145/297 (48%), Gaps = 7/297 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D W  ++ F   A+ GSFT AAE L  ++S+IS++I+ LET +G+ L +R  R L L
Sbjct: 1   MHMDKWIGIQEFVTAAKYGSFTSAAEYLGTTKSNISKKITHLETRLGVTLLHRSNRRLVL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G      ++++   LE     + E+    SG + ++    +G++LL   + +F  L+
Sbjct: 61  TSAGEVYFEHSTKLLKTLEQNDQLVIETQEHLSGPIVVSLPPGIGESLLMEPICKFQQLH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+     +  + ID+     D A RL  P    +LI R L        A+P ++K    
Sbjct: 121 PDVTFVTNVSIQCIDLVEQPFDLAFRLS-PTIDPNLIARPLRRAPYRLCASPQFIKTH-S 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P  IQ++ + + + + D +      +++    ++ + +  I +C+  +S  +++Q C   
Sbjct: 179 PKEIQDITRLSCLAYSDQLSPKNAVWSFKNPQNQQVLQLEINACIYSDSVTTLVQACHRH 238

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +GI    D+ V  +     LV + E+ I+    ++  YP+      +++AF +F+  
Sbjct: 239 AGILYCSDFFVAKHIAEASLVSLFEEWISNENQLWLVYPDRKSVKRRVRAFIDFVLE 295


>gi|115358206|ref|YP_775344.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283494|gb|ABI89010.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 340

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 128/297 (43%), Gaps = 11/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F  V   GSF+  A+++H+S S+++R+I+ +E  +G+ L +R    +TLTE G 
Sbjct: 29  LGAMRAFVRVVEMGSFSAVAKEMHVSTSTVARKITAIEEALGVALLHRSTHSVTLTEAGH 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+
Sbjct: 89  IYLERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQL 148

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +   D+     D  I   +     +L+  +L        A P YL  C  P +  
Sbjct: 149 DVRLTDNHNDLVAGGYDLDIHEGENYLD-NLVVHRLSRNDSILCATPGYLDRCGRPATPD 207

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +  + P+    +  +    R    P    L  +    +++    G GIA  
Sbjct: 208 DLLHHNCLRY--VHPEGDPRWELVRGDARHSVLP-AGNLVTDHSELLLEATCAGLGIAEF 264

Query: 245 PDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             ++V+D   +  L  ++             +Y  Y    +++ KL+  ++F+  + 
Sbjct: 265 EIWLVRDLLASGRLEAVLPRYRLHNKLTGEHIYIAYLANRRSSAKLRVLKDFLADQL 321


>gi|226942541|ref|YP_002797614.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226717468|gb|ACO76639.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 301

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 135/293 (46%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L++F    RS  F+ AA +L ++ SS++R ++ LE+E+G  L  R+ R +++TE G + 
Sbjct: 6   ALKMFVETVRSAGFSAAARRLGIATSSVTRMVTALESELGTVLLNRNTRNVSVTEAGERY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   +E     + +   +  G+L  +  ++ G+ ++   L   L  +P ++I L
Sbjct: 66  YAHAVAILKAIEEADATITDRGSEARGRLSASVPVEFGRRVIAPRLGRLLDRHPALEISL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL ++ ID+  + AD A+RL   + +  ++  ++        A+P YL      +  ++L
Sbjct: 126 ILSDEIIDLLGERADVAVRLGTSMLNDDVVSLRIGEFRRWVVASPEYLAGRDRLVHPEQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +TF     +    F      D  I       L+ N+   + +  + G G+ALL D
Sbjct: 186 VEHDCLTFAYATTEPHWSFR---KGDERIRVDVRGRLRSNNADILREAALAGRGVALLSD 242

Query: 247 YIVKDN---PNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFL 292
           ++V ++     L  ++ D           +   Y    + + ++ AF  F+  
Sbjct: 243 WLVGEDVGKGLLRHLLADYEATPGNLSSAINVLYLPNHRGSRRVGAFIEFLRE 295


>gi|332998662|gb|EGK18258.1| HTH-type transcriptional activator ttdR [Shigella flexneri VA-6]
          Length = 333

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 131/281 (46%), Gaps = 9/281 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  SGSF+ AA  L  + + ++++I  LE  +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E+  + +    ++ +   +P G +RI  +   G++ +   + E +  YP++Q+ 
Sbjct: 69  CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        AAP YL+   +P S+QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H+ +   +   + M    W     +     ++S  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSRHDCLVTKE---RDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
            ++ V    ++  LV+++ +    S  ++  Y E L  + K
Sbjct: 245 SEWDVLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMK 284


>gi|293396999|ref|ZP_06641273.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291420470|gb|EFE93725.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 311

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 131/299 (43%), Gaps = 10/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
                 +R+F  +   G+F+  A +  ++ SS+SR +  LE+ +  +L YR+ R +  TE
Sbjct: 6   QITIRTMRLFVAIVELGNFSEVARREGIAASSVSRVVQQLESALQTQLLYRNTRAVVPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R    +  ++   Q ELQ+   +PSG +R+   +  GQ  +   L E    +P 
Sbjct: 66  AGRLFARYARSMLDQMNEAQWELQQQEHEPSGLVRLNAPVVFGQRHIAPWLAELGERFPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L+  ++ ID   D  D   R+   + SS+L  R   T   H  A+P YL +     
Sbjct: 126 LNIELMQTDEFIDPHRDATDLLFRIG-VLNSSTLHARVFATPQYHLAASPAYLAHAPALT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +HN + +        + + +L +  R         L  N+  +++   + G G+
Sbjct: 185 QPADLYQHNCLVYRGFTGP--QRWFFLDSDQRWQPHTFSGSLTSNNAETLVSAALNGMGM 242

Query: 242 ALLPDYIVKD---NPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + PD+++ D   N  LV ++             +   YP A +   K++A  +F   K
Sbjct: 243 VVFPDWLIGDALKNGTLVPVLPQFAVSTTLEPQAIAAIYPNARRPPLKVRAVIDFFVEK 301


>gi|184158220|ref|YP_001846559.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332875771|ref|ZP_08443570.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183209814|gb|ACC57212.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322508541|gb|ADX03995.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323518158|gb|ADX92539.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332736035|gb|EGJ67063.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 310

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 128/295 (43%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQKYHLAASPQYIAKYGTLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL++H  + +     +    +      +  +  P    L  N+  S+M   + G GI
Sbjct: 185 HPTELNQHKCLVYKGF--EGPNRWLVRKPNEEWVHYPITPLLSSNNAESLMTAALHGMGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD+++ +     +L++++ +      +    +   YP        ++A  ++
Sbjct: 243 VLFPDWLIGEALKQGDLIKLLPEYEVAIKSHPQHIAAIYPNVRHPPLNIRAVIDY 297


>gi|119478548|ref|ZP_01618491.1| transcriptional regulator, LysR family protein [marine gamma
           proteobacterium HTCC2143]
 gi|119448452|gb|EAW29701.1| transcriptional regulator, LysR family protein [marine gamma
           proteobacterium HTCC2143]
          Length = 310

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  + S+T A++   + +S++SR+I+ LE  + ++L  R++R L+LT++
Sbjct: 2   LDINAMLLFARVVAAQSYTQASKDTGIPKSTLSRKIAQLEEHLDVRLLQRNSRSLSLTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  ++     +  ++E  ++ ++ +    +G L++   +   Q++       FL  YP I
Sbjct: 62  GRLVYEKALNILSEVEAVELSVESARQDVAGTLKVLFPVSFDQSIATSLCTGFLKKYPKI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +      + DID+     D A+    P+ SS+LI + L    M   A+P YL+    P S
Sbjct: 122 ETIFQFSDSDIDLISQNFDIAVAFG-PLSSSNLIAKPLFQRDMVLVASPAYLEKQGTPTS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I  L  H  I  G+     +              +P+     VNS  ++ Q  + G GIA
Sbjct: 181 IAALADHQGILLGNSSSMPIWPLGTGTQKSLVTFQPKAC---VNSAAAVKQLVMAGLGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LL     K       LV+I+++        Y  Y    + + ++  F +++
Sbjct: 238 LLSASQCKLGLQQGTLVQILKEFPLEPLKAYGLYSSRHQLSPRISCFLDYV 288


>gi|312959149|ref|ZP_07773668.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311286919|gb|EFQ65481.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 290

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 124/291 (42%), Gaps = 18/291 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + +F  +  SG+ T AAE+L+L++S++ + ++ LE  +G  L  R  R   LTE G 
Sbjct: 6   FDGVELFLHIVESGNLTEAAERLNLTRSAVGKGLARLEARLGTCLLQRSTRRQRLTEDGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        +LE  +  L+    +P G+LR++  +  G +     L   +  YP ++I
Sbjct: 66  AYYEHCLRALAELEAAESVLESGRQQPRGRLRVSLPLAFGHHYAAPALWSLMDRYPALEI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D++ +  D A+R+     +  L  R+L    +   AAP Y++      SI+
Sbjct: 126 EICFADRLVDLAQEGFDIAVRIGPLPDTDRLSARRLGEQSVCLAAAPAYMQRVGPIESIE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I +    P                     S L ++   ++    + G G+A L
Sbjct: 186 DLATHRGIAYRHNTPHRSR---------------VASPLLMDDLQAVADAAIAGVGLAWL 230

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P ++V        L  ++         ++  +P A     K +   + +  
Sbjct: 231 PSWLVAHYVLRGQLEAVLPGYREQPSPIHVIWPTAAHMPAKTRCAIDALVA 281


>gi|307727396|ref|YP_003910609.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587921|gb|ADN61318.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 301

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 125/292 (42%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +  +S  I  LE +VG  L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMTSFTRAAESLGIQKGRVSLVIRELERDVGATLLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++   ++  Q     +     G+LR+    +L ++++   L + +  +P++Q
Sbjct: 63  RAFYSRARDLLADVQELQSMFSSNGTPLRGRLRVDMPTELARSVVVPALPQLMAAHPELQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  PI   SLI R L  + M   A+P YL     P  +
Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRLG-PIADESLIARPLGKLRMTNAASPSYLARHGIPHRL 181

Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L    H ++ +   +      + +    +          +QVNS  +     + G G+
Sbjct: 182 DDLLNQGHRMVHYTLTLGAKHAGWEY-PHGNGYATLALPGAMQVNSVQTYHAAGLAGIGL 240

Query: 242 ---ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                L       +  LV ++ D+                 + +++ F ++I
Sbjct: 241 IQAGYLALAHHIQSGALVEVLPDLRPEPLAASLVVAHRRNLSPRVRTFMDWI 292


>gi|260752262|ref|YP_003225155.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551625|gb|ACV74571.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 303

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 130/294 (44%), Gaps = 6/294 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D++   +F  VA  GSF  AAE + LS+ ++S+ +S LE  +G  LF R++R ++L
Sbjct: 1   MKLPDFEAWAIFAKVAELGSFARAAEAIQLSKPTVSKAVSRLEQSLGSALFNRNSRHISL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G  L    +++  + E  + E +    +PSG ++IA     G   L   L +FL  Y
Sbjct: 61  TDLGRSLLGHANKIIAEAEMAETEARGGIQRPSGLIKIAAPTTFGLWHLSPVLPDFLAQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I I +   +  +D+  +  D A+R+   +  S+L  R+L  + +   A   YL     
Sbjct: 121 PEIDISIDFSDALVDLVGEGYDIALRIAS-LADSALRARRLCPVRLLLVATSDYLDRIGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   + L+K     + +     M          +     + S  + ++  + +     G 
Sbjct: 180 PQHPKALEKQKSFVYTNSRASGMIRLRH-KESGKEYVLSQSSRFRADNAEAFLPALEAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G  + PD++V +   +  L +I+ +    S  +Y           ++    +++
Sbjct: 239 GFGIFPDFMVWEGLKSGKLEQILPEWDAGSIALYLVTSANPLRPMRVNVLLDYL 292


>gi|115360371|ref|YP_777508.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285699|gb|ABI91174.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 297

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L VF  VAR  SFT AA +L +SQS++S+ +  LET +G++L  R  R ++ TE G
Sbjct: 5   NLNDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLETRLGVRLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    ++E     + +   KP+G +RI  T      ++   L+  L  YPDI+
Sbjct: 65  EELFQAVAPRIDEIEMKLAAVADFRDKPAGVVRITATEHPIDTIIWPKLRRVLPDYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D    +I  +  D  +R    +    +  R    I M   A+P YL   + P + 
Sbjct: 125 VELSVDYGLANIVEERYDIGVRYGDQVAKDMIAVRISPDIRMTMVASPAYLDGRKPPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ +T      K +  + W     R   + R+S  +  N+   ++Q  + G GIA
Sbjct: 185 QDLLDHDCVTLRLATAKGI--YAWELKKGRNEIQARVSGRITCNTQPHMVQAALDGFGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + IV D+     L  +M D        +  YP   + +       + +  +A
Sbjct: 243 FVTEDIVLDHVRSGQLRIVMPDWCPVFPGYHAYYPSRRQASRAFSIVIDALRHRA 297


>gi|254253805|ref|ZP_04947122.1| regulatory protein LysR [Burkholderia dolosa AUO158]
 gi|124898450|gb|EAY70293.1| regulatory protein LysR [Burkholderia dolosa AUO158]
          Length = 375

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 132/297 (44%), Gaps = 11/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +R F  V  +GSF+  A+++H+S S+I+R+++ +E  +G+ L +R    +TLTE G+
Sbjct: 64  FGAMRAFVRVVETGSFSAVAKEMHVSTSTIARKVTAIEDALGVPLLHRSTHSVTLTEAGN 123

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+
Sbjct: 124 IYLERAVTLIADLDDTLRVVAELNARPSGPLKLTAPVAFGRRHLAPLVAPFLARYPTIQL 183

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +   D+     D  I   +     +L+  +L        A P YL  C  P +  
Sbjct: 184 DVRLTDNHNDLVAGGFDLDIHEGENYLD-NLVVHRLSRNDSILCATPGYLDRCGRPSTPD 242

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +  + P+    +  +    R    P    L  +    +++    G GIA  
Sbjct: 243 DLKQHNCLRY--VHPEGDPHWELVNGDARHSLLP-AGNLVTDHSELLLEATCAGLGIAEF 299

Query: 245 PDYIVKD---NPNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFLKA 294
             ++V+D   +  L  ++      +      +Y  Y    +++ KL+  + F+  + 
Sbjct: 300 EIWLVRDLLASGQLEAVLPRYRLHNRLTGEFIYIAYLANRRSSAKLRVLKEFLVERL 356


>gi|114761107|ref|ZP_01441022.1| transcriptional regulatory protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114545355|gb|EAU48357.1| transcriptional regulatory protein [Roseovarius sp. HTCC2601]
          Length = 297

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 117/292 (40%), Gaps = 4/292 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR F  VAR  +FT AA  + +SQS++S  I  LE  +G++L  R  R +  TE G 
Sbjct: 6   IDDLRAFIAVARERNFTRAAAGMGISQSALSHTIRQLEARLGVRLLTRTTRAVAPTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    +  +  ++     L +    P+G +RI ++     ++L   L  FL  +PDI++
Sbjct: 66  RLLEGITPHFAGIDAELDALGDLRDTPAGTVRIVSSEYGVSHILWPRLAPFLKAHPDIRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  DN   DI  +  D  +R  + +    +  R    +       P    +   P   +
Sbjct: 126 EITQDNGLNDIVSEGYDAGVRRGEHLARDMISARIGPDLRYIVVGTPDLFDSRPRPRHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL     + F          +      D  +       L  N+    ++    G G+  +
Sbjct: 186 ELAALPCVNFQLQSTGGFFAWE-FKERDHELRVKVEGQLAFNNIFDCLRAAEAGFGLTYV 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P+ I +       LV+++ED        +  YP   + +   +A    +  +
Sbjct: 245 PEEIARPGLAEGRLVQVLEDFCPVWDGFHLYYPNRRQASAAFRAVLEALRHR 296


>gi|295095811|emb|CBK84901.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 297

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 6/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R F  V  SGSFT AA+ L++  +++S+ +  LE  +  +L +R  R +  T +G + 
Sbjct: 2   AMRAFTRVVESGSFTRAADSLNMPIATLSKLVKSLEAHLETRLLHRTTRRVVTTAEGMEY 61

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V   +E      + S   P G LRI       +++L   L +F   YPD++I L
Sbjct: 62  YEKALRVLIDIEDIDTAFRASCCTPKGHLRIDVGGSTARDVLIPLLPDFFQRYPDLRINL 121

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+     DC IR   P+  SSLI R +    M A A P YLK    P   QEL
Sbjct: 122 GVADRPVDLISGNVDCVIR-GGPLDDSSLIARHIGDARMIACATPGYLKTHGIPAYPQEL 180

Query: 187 DK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
              H LI++   +      F +L     P+       L VN   + +   + G GI    
Sbjct: 181 RNGHKLISYLSPVTGRAFPFRFLDR-GEPLEISVPHHLGVNESNAHLAAALAGLGIIQTF 239

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            Y  +   +   LV ++ D    ++  +  YP++   T +L+ F  ++  
Sbjct: 240 GYAARTHLETGALVEVLSDWRPKAYPFHVVYPQSRHLTHRLRVFIAWLAE 289


>gi|254560143|ref|YP_003067238.1| LysRl family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254267421|emb|CAX23260.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           DM4]
          Length = 307

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 11/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F  +  +GS + A  Q  LS  ++SR+++ LE E+G++L +R  R + LT
Sbjct: 1   MPMNLLDVALFCAIVTTGSLSAAGRQAGLSPMAVSRRLAALEHELGVRLIHRTTRSVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G     +   +    E       E     SG LR+     +G+ L+   + + +   P
Sbjct: 61  ADGETFLPLAQTMLEAQEAATAAFSEQHEGLSGVLRVTAPHRIGRALVVPLVVQLMAENP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L   +  +DI     D AIR+   +Q+S L+  ++        AA  YL     P
Sbjct: 121 RLKVDLTFSDGIVDIVAGGIDVAIRVA-TLQASELVAVQVADNPRILCAATTYLAAHGCP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +LD H  +T   +      D         PI +     L  +S  ++   CV G+G
Sbjct: 180 ERLADLDAHACLTLHAM------DVWTFRQAGHPIAKRIKGRLAASSVDTVHAACVAGAG 233

Query: 241 IALLPDYIVKDN---PNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +ALL  + V  +     L  + + D       ++   P       +++ F +
Sbjct: 234 LALLTYWDVAQDLANGTLKALTLNDAEPEQLAIWAVLPTRQHMPARVRRFID 285


>gi|241761698|ref|ZP_04759785.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374006|gb|EER63539.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 303

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 131/294 (44%), Gaps = 6/294 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D++   +F  VA  GSF  AAE + LS+ ++S+ +S LE  +G  LF R++R ++L
Sbjct: 1   MKLPDFEAWAIFAKVAELGSFARAAEAIQLSKPTVSKAVSRLEQSLGSALFNRNSRHISL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G  L    +++  + E  + E +    +PSG ++IA     G   L   L +FL  Y
Sbjct: 61  TDLGRSLLGHANKIIAEAEMAETEARGGIQRPSGLIKIAAPTTFGLWHLSPVLPDFLAQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I I +   +  +D+  +  D A+R+   +  S+L  R+L  + +   A   YL     
Sbjct: 121 PEIDISIDFSDALVDLVGEGYDIALRIAS-LADSALRARRLCPVRLLLVATSDYLDRIGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   + L+K     + +     M       +  +     + S  + ++  + +     G 
Sbjct: 180 PQHPKALEKQKSFVYTNSRASGMIRLRHEQS-GKEYVLSQSSRFRADNAEAFLPALEAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G  + PD++V +   +  L +I+ +    S  +Y           ++    +++
Sbjct: 239 GFGIFPDFMVWEGLKSGKLEQILPEWDAGSIALYLVTSANPLRPMRVNVLLDYL 292


>gi|127510963|ref|YP_001092160.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126636258|gb|ABO21901.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 299

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 134/292 (45%), Gaps = 8/292 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GS T AAE L++S+S +S+ +  LE     +L  R  R L+LT++G   
Sbjct: 8   RMLVFASVVEHGSLTRAAESLNISRSMVSQHLKKLEHRCQSRLLNRTTRSLSLTQEGQSF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R  +E+    +  +  LQ +  +  G + +A    LG   +   +K F   YP + + L
Sbjct: 68  YRYCAELLKLAKQAETSLQPADAELQGSITLAVPQALGDGEIAPIIKTFHQHYPKVHLSL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++ +D++    D AI++    Q  S+ + +L     +  A+P Y+ +   P+    L
Sbjct: 128 LIQDRQLDLTEHQIDVAIQIGAASQ-PSVNETRLGRFDEYLVASPDYVAHHGAPVHPDNL 186

Query: 187 DKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ I   GD +P+  +  N      R    P I+C   NS    +   + G G+ALLP
Sbjct: 187 SHHHWIGLAGDRLPRHWQFENSEGERVRLQLSPFINC---NSLQGTLSLAMQGLGVALLP 243

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             ++  +     LV+++ D       +Y  +P       +++A    +  + 
Sbjct: 244 SPLISQHLANGQLVQLLPDYHLGRGALYLVHPYLEVIPPRVRALIELLTERL 295


>gi|307314151|ref|ZP_07593762.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306899137|gb|EFN29777.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 296

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 134/289 (46%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVA+  SFT AA +L +S S++S+ I  LE  +G++L  R  R +  TE G
Sbjct: 3   NFNDLAAFAVVAKERSFTRAAAKLRVSPSALSQTIRNLEERLGLRLLTRTTRSVASTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R  +  + ++E     L E   KP+G +RI        +LLQ  LK FL  YPDIQ
Sbjct: 63  ERLLRTIAPRFDEIEAELAALSELRDKPAGTVRITAGEHPAISLLQPALKRFLPDYPDIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+D    DI  +  D  +R+ + +    +  R    + M   A+P Y +    P + 
Sbjct: 123 VEIIIDYGLTDIVAEGYDAGVRMGEQVAKDMIAVRIGPDMRMALVASPGYFERHPLPKTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  HN I     +P     F W L   +R +       L  NS    +   + G G+A
Sbjct: 183 QDLTDHNCINI--RLPTYGGVFPWGLEKDERDVKVRGDGQLVFNSLAMRLASALDGLGVA 240

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P+  V     +  LVR++E+        +  YP    ++  L     
Sbjct: 241 YMPEDHVLPYLADGRLVRVLEEWCPYFPGYHLYYPSRRHSSPALTVLVE 289


>gi|15595321|ref|NP_248813.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107099115|ref|ZP_01363033.1| hypothetical protein PaerPA_01000124 [Pseudomonas aeruginosa PACS2]
 gi|116053844|ref|YP_788281.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254237635|ref|ZP_04930958.1| hypothetical protein PACG_03720 [Pseudomonas aeruginosa C3719]
 gi|254243231|ref|ZP_04936553.1| hypothetical protein PA2G_04035 [Pseudomonas aeruginosa 2192]
 gi|296386610|ref|ZP_06876109.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313112312|ref|ZP_07798079.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9945951|gb|AAG03513.1|AE004450_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115589065|gb|ABJ15080.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169566|gb|EAZ55077.1| hypothetical protein PACG_03720 [Pseudomonas aeruginosa C3719]
 gi|126196609|gb|EAZ60672.1| hypothetical protein PA2G_04035 [Pseudomonas aeruginosa 2192]
 gi|310884581|gb|EFQ43175.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 302

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V   GS   AA+ L ++ S++S+QI  LE+   + L +R  R LTLTE
Sbjct: 1   MDSLKGMAIFATVVDKGSMAAAAQSLGMTPSAVSQQIRKLESRAQVTLLHRTTRRLTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  +++    E  +  L E    P G+LR+A  +     L+   LK  L  +  
Sbjct: 61  AGEAFYRSCAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGFSGTLITQALKPLLENHRQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL   ++ ID+  +  D AIR+   +  SSL+ R L        AAP YL+      
Sbjct: 121 LRLQLFFQDERIDLVAERIDLAIRVGN-LADSSLVARHLGDWSSVLCAAPAYLRQRAPIN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L + + I+            +     V +   EPR++    N  L++ Q+ + G G
Sbjct: 180 RPEQLTEVDWISLNTSNHLNHLTLSGPGGEVCKLRLEPRVAA---NGMLAVRQFTLDGLG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  P   V+D   +  L +++ +   P   +Y   P       K+K     +
Sbjct: 237 VSYQPLPEVRDALNDGRLQQLLPEWRIPGLGIYAVTPRREAQPAKVKVAIEAL 289


>gi|294138913|ref|YP_003554891.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293325382|dbj|BAJ00113.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 297

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 131/292 (44%), Gaps = 8/292 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GS T AAE+L +S+S +S+ +  LE     +L  R  R + LT+ G   
Sbjct: 8   RMLVFANVVEQGSLTAAAEELGISRSMVSQHLKKLELRCETQLIQRTTRKMGLTQDGQNF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +E+    +  +   +  +++  G +RI   +  G++ L  ++ EF  LYP I+I +
Sbjct: 68  YYYCAELLQLAKQAENSTRPDNIELHGNIRILAPVCFGEHDLLQHMGEFHRLYPKIRISI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L++  +D+  +  D AI+    +    +   KL     +  A+P YL+    PL    L
Sbjct: 128 QLEDSPMDLKDNKIDIAIQTGARM-DPRIDAIKLAQFDEYLVASPEYLEQHGSPLHPDML 186

Query: 187 DKHNL-ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H   +   + +PK  +  N      +    P  +C   NS L +M     G GI +LP
Sbjct: 187 QMHLWVLQASNQLPKRYQIQNSYGDNFKLNINPSTTC---NSNLGVMSLVKQGLGIGILP 243

Query: 246 DYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            Y+ +       LV I+ D       +Y  +P       K++AF +FI  + 
Sbjct: 244 SYLAQPQIASKHLVHILSDYHLQEGLIYATHPFNDVIPPKVQAFIDFIKERL 295


>gi|123443501|ref|YP_001007474.1| DNA-binding transcriptional activator GcvA [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332160578|ref|YP_004297155.1| DNA-binding transcriptional activator GcvA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122090462|emb|CAL13330.1| glycine cleavage system transcriptional activator [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|318606946|emb|CBY28444.1| glycine cleavage system transcriptional activator GcvA [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664808|gb|ADZ41452.1| DNA-binding transcriptional activator GcvA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860872|emb|CBX71155.1| glycine cleavage system transcriptional activator [Yersinia
           enterocolitica W22703]
          Length = 305

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFTSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNAAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +    + L   +L    +    AP  L          
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLLMGENGLKVPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +W+A   R +G P+I+  Q    +    ++Q  V G GI
Sbjct: 185 DLANHTLLH-------DTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQSEIEAGRLVCPFSDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|269963744|ref|ZP_06178063.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831537|gb|EEZ85677.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 294

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 137/295 (46%), Gaps = 11/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D + VF  VA   SFT AA+ L + ++ +S+ +S LE  +  +L +R  R L+LT+ 
Sbjct: 2   ISLDDMMVFAKVAEKQSFTQAADDLDIGKARVSQIVSKLEQALNTRLLHRTTRSLSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     +         E Q+++  PSG +RI+T        L   L EFL LYP+I
Sbjct: 62  GLRYYEKCKLIGDIASEANAETQDANQIPSGTIRISTPSSA----LVDILSEFLHLYPEI 117

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +I  +   ++     D A+R    ++ SSL   +L        A P YL    +  +
Sbjct: 118 KLDIIESDSYSNLIESRCDIALRASSALEDSSLYAVRLGYFRDMICATPTYLSKVEKVST 177

Query: 183 IQELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L   + I+   +   K +   N    V R +  P++   QV +  ++ ++ +   G 
Sbjct: 178 PEDLLALDWISHHIVHGDKQLTMTNSQGQVTRLVHSPKV---QVRTAAAVKEFVLNHLGF 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A++P +++K+     +LVRI+ DV      +Y  Y E      +++    F+  K
Sbjct: 235 AIMPSFMMKEELARGDLVRILPDVHDLEIPIYAVYQEKALMPLRVRTLIEFLKQK 289


>gi|209549263|ref|YP_002281180.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535019|gb|ACI54954.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 305

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +GSF  AA+ +   +S++S+ +  LE  + +KL  R  R +T+T 
Sbjct: 1   MDQLGAIRAFVRVVEAGSFAKAADTMGAPRSTVSKLVQDLEASLSLKLLERTTRSVTVTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG   +     +   L+    E     +  SGKLR+         +L   L EF  LYP+
Sbjct: 61  QGIAYYERALRLIADLDEMNNEATRGRLATSGKLRVDIGGTFANAILIPRLPEFYALYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L +  +  DI  +  DC IR    + S+S++ RKL ++ +   A P YL+    P 
Sbjct: 121 IELHLGVTERQADIVEEGIDCVIRAGD-LSSASIVARKLCSVEIVTCATPGYLEKYGVPA 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           S  +L + H  + +             +   ++      I  L  +   + +Q  + G G
Sbjct: 180 SPSDLQRDHIFVQYFFARSLKAAPVRLMKGEEKIEIYSPIK-LSTSDATAHLQGILAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I    +++ + +     LV IM D   P + V+   P     + K + F +++
Sbjct: 239 IGQTFEFLARPHIARGTLVPIMNDWAPPRYPVHILRPAGRFPSVKYQVFADWV 291


>gi|149923928|ref|ZP_01912315.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149815216|gb|EDM74764.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 314

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 125/283 (44%), Gaps = 6/283 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R+F  +  +GS   AA QL    SS+SR+++ LET +G +L  R  RG   TE G++ + 
Sbjct: 11  RLFLRIVEAGSLKAAAAQLGSDPSSVSRRLAALETRLGQQLVRRSTRGSKPTEAGARYYE 70

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +++  + +  +  +     +P G+L +    + G   +   L++    YP + ++L L
Sbjct: 71  GLAQLVAQQDALEAAVAGGRDEPQGRLHVTAPPEFGVRFVVPVLEQLQRRYPALVVELAL 130

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
                +++    D A+R+ K +  SSL  RKL  +     A+P YL     P S+ EL +
Sbjct: 131 GTAFTNLAERGLDAAVRIGK-LSDSSLRARKLGVVPRLLVASPAYLDAAGTPRSLAELPE 189

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H +I++  L    +                      VNS  ++++    G+GI L P + 
Sbjct: 190 HRVISY--LTRSGVNRVRARTPRGDLREVEVRPVFTVNSISTLVRMVEGGAGINLAPRWA 247

Query: 249 VKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             D      +V + ED    ++ V   YP       K +AF  
Sbjct: 248 FADALAAGRVVALFEDHRFEAYPVQIVYPSRRYLPAKTRAFIE 290


>gi|119896404|ref|YP_931617.1| putative transcriptional regulator [Azoarcus sp. BH72]
 gi|119668817|emb|CAL92730.1| putative transcriptional regulator [Azoarcus sp. BH72]
          Length = 298

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 123/289 (42%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +++   +A SGS T AA+ L +S   + R ++ LE  +G++LF R  R L+LT++G 
Sbjct: 4   LKAMQIAVAIADSGSLTAAADSLDISLPVVVRTLAALEAGLGVRLFNRSTRRLSLTDEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++   +   +  L   +V PSG++ +   +  GQ  +   L  F+  Y  +++
Sbjct: 64  DYLARCRQILADIHDAEAALASDAVVPSGRVVVTAPVMFGQQHVAPALTRFVQHYGQMRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +++  ++ D A+R+   I+  SL+   L T+     AAP YL     P   +
Sbjct: 124 ELRLHDRVVNLLEEHIDVAVRIGA-IEDQSLVAHALGTLRRIVVAAPAYLAARGTPQHPR 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  I F                     G      L  N     +  C  G G+   
Sbjct: 183 ELAAHECIVFNGNSAGWWR----FIDDGHEFGMTVDGRLTYNHVAPALDACRAGMGLGTF 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y + D+     L+ ++E    P   V+  +P A     + +   +++
Sbjct: 239 IAYQIADDLHAGRLLPVLEAFELPPRPVHVAFPHARLLPTRTRVLVDWL 287


>gi|328470190|gb|EGF41101.1| transcriptional regulator LysR family protein [Vibrio
           parahaemolyticus 10329]
          Length = 293

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L++F  V + GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT +
Sbjct: 1   MKIDDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNK 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L++   +    S++  GK+++    +  +  LQ  L EF   YP +
Sbjct: 61  GDAYYQDLQKVLTLLDSANQQASNESIEVRGKIKLGLLPETYEP-LQPILFEFQDQYPQV 119

Query: 123 QIQLI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +  ++N  ID+     D A+     +  S ++ RK++T+     A+P+YL+    P 
Sbjct: 120 ELDIRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPA 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++EL  H  I F    P    D  W         +P+   L  N+   I    VL  GI
Sbjct: 179 TLEELSDHQCICF--RWPNGNVDNLWHFQEQNVALKPK---LISNNIGFIKSSTVLDRGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +P  +VK   ++  LV+++        T +  YP+        +     +
Sbjct: 234 SYIPKLLVKNELESGALVQVLSQYAVTEETGWLLYPQPKTLNQASRLLIEHL 285


>gi|262280426|ref|ZP_06058210.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258204|gb|EEY76938.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 304

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 127/301 (42%), Gaps = 9/301 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +     L+    +A   +F  AA +L +S S++SR I+ LE  +GI+LF R  R ++LTE
Sbjct: 3   NTSLTDLKAVIALANHRNFRSAAVELDMSSSALSRNIAQLEHNLGIRLFNRTTRSVSLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +     +    +++    E  +    PSG LRI     + + +L   + E++  YPD
Sbjct: 63  AGLQFLTRITPALEQIDLAVQETLDRRATPSGTLRINAEEGMSRQILHSVIIEYIRRYPD 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L+ D + IDI  +  D  IR    +    +         M   A P YL     P 
Sbjct: 123 VRVDLVSDGEFIDIVKEGFDAGIRFSSTVPQDMVAIEIGPKQSMAVVATPTYLNTHGIPH 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L KH  I       K  +     +  +  +       L +++Y+  +   + G G+
Sbjct: 183 IPSDLLKHQCIRLRLPSGKIYKWE--FSQHNESLTIDVSGHLTIDTYMLAIDSALSGIGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
                + V    +   LVR++ED       +   YP+    +  L+AF +     AR+ +
Sbjct: 241 TYTGHWFVAPLIEQGKLVRVLEDWTPLYAGLCLYYPQGKHPSAALRAFIDL----AREQR 296

Query: 299 F 299
            
Sbjct: 297 L 297


>gi|209548512|ref|YP_002280429.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534268|gb|ACI54203.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 308

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 127/297 (42%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D + V   V   GS + A+  L    +++SR++S LE  +  +L  R  R +TLTE
Sbjct: 1   MDRLDAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRTVTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  ++E  +         P G L +   I  G+  +   + +FL  YPD
Sbjct: 61  AGRSYVEAAREILDRVEEAERTAAGEYSVPKGALIMTAPIVFGRLHVLPVVVDFLKAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YL     P 
Sbjct: 121 INLRLMLGDRLSNLVEDHIDVALRIGN-LPDSNLIATRLGAIRRTVYASPDYLARQVTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ ITF  +       F       R +  P  S L VN+  + +   V G GI
Sbjct: 180 HPADLAAHDCITFDSMASTLSWTFT---EGKRGLTVPIRSRLAVNTAEAAVDAAVAGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y          L  ++ D   P   V+  YP       KL+A  +F   + R
Sbjct: 237 TRVLSYQAARAETAGLLAPLLADFEPPPAPVHLVYPAQGLVPLKLRALIDFATPRLR 293


>gi|160873791|ref|YP_001553107.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160859313|gb|ABX47847.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315266017|gb|ADT92870.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 329

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 137/295 (46%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  
Sbjct: 1   MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  ++ +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P +
Sbjct: 61  GSHFYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I  ++ +D+     D A  +   + +  L+ R + T  +  YA+P YL     P +
Sbjct: 121 TLEVISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAAHGTPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +E++ HN+  F     K    FN L          R      NS    +++ + G GI 
Sbjct: 181 PKEIEAHNVSMFRLSNGKI---FNELFIGSEQEVRVR-GNFCSNSIEVAVEFGLQGRGIV 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P  +V    +   LV ++ ++       +  YP     +   + F ++I  + 
Sbjct: 237 YAPSEVVAEYVETGELVTLLPEIQPHQGECFLAYPSRRYVSLASRRFIDYIMQEL 291


>gi|260426363|ref|ZP_05780342.1| LysR substrate binding domain protein [Citreicella sp. SE45]
 gi|260420855|gb|EEX14106.1| LysR substrate binding domain protein [Citreicella sp. SE45]
          Length = 300

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 125/295 (42%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+L +F  +   GSF  AA  LH+++S+ +  I+ LE E G++L  R  R +  T 
Sbjct: 1   MDRLDRLELFTRIVEGGSFARAARDLHVARSTATNAINQLEQEAGVRLLARTTRQVAATP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G++ +R    +  ++E T          P+G LRI  +  L +  L   L  FL  +P 
Sbjct: 61  EGAEFYRRARAILAEVEDTFGTFAS--GSPTGHLRIDASGLLTRTFLVPRLPAFLERFPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I     ++ +DI  D  DCA+R   P Q SSL  RKL  +     A+P YL     P 
Sbjct: 119 LTISFSQSDRFVDIVRDGVDCALRAGHP-QDSSLRMRKLGELPEITCASPAYLARHGTPR 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              +L+ H +I F  L  +  E        D      R+   +  ++  +       G G
Sbjct: 178 DCDDLESHRMIGF--LSSRTGEVMPLEFRRDGATVHRRLPAPVSTDNSDTAAALARQGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P Y    +     LV ++E        +   +      + +L+ F +++  
Sbjct: 236 LIQAPRYRFASDLASGALVEVLEGTPPEPLPLNAIHAGDRSVSRRLEVFLDWVKE 290


>gi|116251190|ref|YP_767028.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255838|emb|CAK06919.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 308

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D + V   V   GS + A+  L    +++SR++S LE  +  +L  R  R +TLTE
Sbjct: 1   MDRLDAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRKITLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  ++E  +         P G+L +   I  G+  +   + +FL  YPD
Sbjct: 61  AGRSYVEAAREILDRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YL     P 
Sbjct: 121 INLRLMLGDRLSNLVEDHIDVALRIGN-LPDSNLIATRLGAIRRTVYASPDYLTRHTLPP 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ +TF  +       F         +  P  S L VN+  + +   V G GI
Sbjct: 180 HPGDLAGHDCVTFEGMASMLSWTFT---EGKHDLAVPIRSRLAVNTAEAAVDAAVAGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y          LV +++D   P   V+  YP       KL+A  +F   + R
Sbjct: 237 TRVLSYQAARAEMAGLLVPLLQDFEPPPAPVHLVYPAQGLVPLKLRALLDFATPRLR 293


>gi|15887611|ref|NP_353292.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15155154|gb|AAK86077.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 296

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 127/288 (44%), Gaps = 5/288 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   VA   SF  AA +L ++ S++S  +S LE  +G++L +R  R ++ TE+G 
Sbjct: 6   LSQLAVLAAVAEGRSFRKAAAELAIAPSAVSHAVSSLEASLGLRLLHRTTRSVSPTEEGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L          ++     L E   +P+G LRI       ++L+   L EFL LYPDI +
Sbjct: 66  QLLETLGPALADIDAVIETLAEHGGRPAGPLRITLPRLAAEDLIVPRLGEFLRLYPDISL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D++  DI     D  +RL + + +  +  +           AP Y      P   +
Sbjct: 126 EISTDDRFEDIVAKGFDAGLRLGEHLDADMIAVKASGAWRGAIVGAPAYFAENAPPREPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I               L    +P+       L ++    I +  + G+G+A +
Sbjct: 186 DLIRHRCIRRRFSSGLIYRWE--LEKNGKPLVVDVQGPLILSDQSLIRRAAIDGAGLAFV 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +  V+++     L+R++ED   P    Y  YP   +    L+AF +F
Sbjct: 244 FEQRVEEDIAEGRLIRVLEDWCAPFDGFYIYYPSRRQMRPALRAFVDF 291


>gi|13471878|ref|NP_103445.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022622|dbj|BAB49231.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 301

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + +F  VA  GSFT AA+ L + +   S  +  LE +VG++L +R  R + LTE G
Sbjct: 3   NLEPILIFITVAEMGSFTRAADSLGIQKGRASTAVRKLEEDVGVRLLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H    ++   ++          V   G+LR+    ++ +  +   L +F+  +P+++
Sbjct: 63  RAFHARARDLLADVDDLHSMFASDRVALRGRLRVDLPTEVARTTIVPALPDFMATHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +D+  +  DC +RL  PI+  +LI R L  + M   A+P YL     P S+
Sbjct: 123 LEVSSTDRQVDLVQEGFDCVLRLG-PIRDETLIARPLGLLRMVNAASPAYLARYGVPRSL 181

Query: 184 QELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++L +  H  I F  ++      + +    D          L VNS  +     + G G+
Sbjct: 182 EDLKRQEHRTIHFSTILGARPHGWEYPDG-DNYATLQLPGALHVNSAQTYEAAALAGLGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              P   V    ++  LV I+ D    +  V          + +++AF  +I
Sbjct: 241 IQAPLLGVGQYLESGALVEIIPDFRRRALAVSLVVAHRSNLSRRVRAFMKWI 292


>gi|241203794|ref|YP_002974890.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857684|gb|ACS55351.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 299

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D + V   V   GS + A+  L    +++SR++S LE  +  +L  R  R +TLTE
Sbjct: 1   MDRLDAMTVLLAVVEQGSLSAASRHLRSPLATVSRKVSELEAHLNAQLLQRSNRKVTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+ +++E  +         P G+L +   I  G+  +   + +FL  YPD
Sbjct: 61  AGRSYVEAAREILNRVEEAERTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YL     P 
Sbjct: 121 INLRLMLGDRLSNLVEDHIDVALRIGN-LPDSNLIATRLGAIRRTVYASPDYLTRHALPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ +TF  +       F         +  P  S L VN+  + +   V G GI
Sbjct: 180 HPGDLAGHDCVTFEGMASMLSWTF---IEGRHDLTVPIRSRLAVNTAEAAVDAAVAGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y          LV ++ D   P   V+  YP       KL+A  +F   + R
Sbjct: 237 TRVLSYQAARAEMAGLLVPLLADFEPPPAPVHLVYPAQGLVPLKLRALLDFATPRLR 293


>gi|293390883|ref|ZP_06635217.1| LysR protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951417|gb|EFE01536.1| LysR protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 297

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 123/297 (41%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++LR F   A+ GSFT AA +L +S S++S  I  LE ++ IKLF R  R +  T
Sbjct: 1   MIDNINELRTFITAAQEGSFTKAAAKLDVSTSALSHSIRKLEEQLNIKLFNRTTRSIATT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L +    ++  +E     L        GKLRI     +   +L   L  F   YP
Sbjct: 61  EAGEQLFQNLLPLFESIEDNLNALSTFRNTLKGKLRINGNDHVFLFILWDKLMAFAEQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  D K +DI     D  IRL   +    +  R    + M     P Y      P
Sbjct: 121 EMELELTSDTKFVDIVAGRFDAGIRLGSDVAQDMIAVRLSDKMQMAVVGTPEYFAKKATP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCV 236
             +++L +H  +     +P       W     +             L  N+   I +  +
Sbjct: 181 KKVEDLGEHECLLV--RLPTSDSIMTWEFQPAKKSAPVVKFHPKGQLCFNNSHLISRAVL 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+A LP   ++   D+  LV ++ +V       +  YP   +N+   KA    +
Sbjct: 239 AGKGLAWLPIDTMQPYLDSGELVEVLSNVAISYDGYHLYYPNRRQNSPLFKALVAAL 295


>gi|260550393|ref|ZP_05824604.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406499|gb|EEW99980.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 299

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 121/296 (40%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F VVA+  SFT AA +L  SQS+IS+ +  LE  +GIKL  R  R +  T
Sbjct: 1   MKENLNDLHTFIVVAQERSFTRAAAKLRTSQSAISQTLRNLEDRIGIKLLSRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L  +      ++E    +L      P+G LRI+      Q +L   +++ +  + 
Sbjct: 61  EAGEYLLSLIQPAIEEIEHGMNQLSALKNDPAGTLRISADEYGIQTVLWPAVEKVIQQFR 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +++  D   +DI     D  +R    +    +  +    I M   A   YL+    P
Sbjct: 121 KISVEITSDYGLVDIVDGRFDAGLRRGGLVSKDMIALQISEPIQMLTVATKEYLERYGHP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              ++L +H  I     +P   E + W  T         ++  +   +   ++Q    G 
Sbjct: 181 KQPKDLVEHQCINL--RLPTHGELYRWQFTKGNKTQSVNVNAKIVFTTLSPVLQAVRSGV 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA LP  +V+   ++  L   ++D        +  YP   +    L    N +  
Sbjct: 239 GIAYLPIDMVQPYIESGELKETLKDWRHSYEPYHLYYPHRREQAPLLNILINALKE 294


>gi|104780732|ref|YP_607230.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95109719|emb|CAK14420.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 310

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 119/296 (40%), Gaps = 4/296 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +  L  F   A  GSF  AA +L L+ +++ + ++ LE  +G++LF R  R LTLTE G
Sbjct: 3   SFSSLECFIRSAEVGSFAEAARRLSLTPAAVGKNVAQLEARLGVRLFQRSTRKLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     S+ +  ++     L  +  +P+G LR++     G+  +   L EFL  YP I 
Sbjct: 63  QRFLGEVSDSFRTIQYAVANLASAEGQPAGLLRVSMGTVFGRLYVLPLLGEFLRRYPAIT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+     D AI     +    ++ RKL   H    AAP YL+   +    
Sbjct: 123 PDWHFDNRQVDLIGQGFDAAIGGGFELP-LGVVARKLTPAHRVLVAAPGYLQRHAQIDHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q L  H  I         +  +   +             + ++   +       G GIAL
Sbjct: 182 QALQAHQGILIRSPQTGRVRSWPLTSRWQEQCPLQLPQTMTMSDSDAACAVAEQGLGIAL 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +             L R++ D       +   Y E     GK +AF +F+  +  +
Sbjct: 242 VSLPFAVPYLTAGRLSRVLPDWYVDDGNISLYYAEHKLLPGKTRAFIDFVAERFAE 297


>gi|296389631|ref|ZP_06879106.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 311

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 132/299 (44%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E  +  + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMAEQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +   R 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGHRL 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                +L+    +  G +          +          R   L V+ ++   +  V G 
Sbjct: 181 -EHPVDLEDLPFL--GAIHNDRKVHATLIGPDGSRYQLEREPRLGVDDFVLRKKAAVAGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ LLP+        + +LVRI+     P  T+   Y         ++A  +F+    +
Sbjct: 238 GVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAYLPRSSQIPAIRALIDFLVEALQ 296


>gi|92114917|ref|YP_574845.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91798007|gb|ABE60146.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 291

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 128/298 (42%), Gaps = 13/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   WD L +   V  +G FT AAE+L  S + +SR +S LE ++   L  R  R L +T
Sbjct: 1   MKSRWDDLALLLAVVDAGGFTAAAERLGTSTARLSRAVSRLERQLDTTLVQRTTRRLDVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       +    LE  +  L     +P+G+LR+        + +  +L  F   YP
Sbjct: 61  EEGASFIAQARQALDTLEAAEEALTVRRREPAGRLRVDAATPFLLHQIVPHLAAFHAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L     +ID+     D AIR+ + ++ SSL  R L        A+P YL     P
Sbjct: 121 KVRLELTTHETNIDLIEQRTDIAIRIGR-LEDSSLHARPLGHSRRRLVASPDYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + + L  H L+ F  L                  G      L  +S  ++++    G G
Sbjct: 180 ATAEALSAHVLLGFTHLPQLNRWPLR--------GGCSVTPTLASSSGEALLRMAEAGLG 231

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++ +D      L  ++ED +   +  +   Y       G++ AF +F+  + 
Sbjct: 232 IACLADFLTRDACQAGRLSFVLEDAMLERYEPIQAVYYRNTALEGRIAAFLDFLAGRL 289


>gi|260363431|ref|ZP_05776278.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|308112554|gb|EFO50094.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 272

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/273 (29%), Positives = 129/273 (47%), Gaps = 6/273 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D   +FY +   GSF+ AA  + L++S +S++I+ LE E+G++L YR  R LTLTE G
Sbjct: 3   NTDDYIIFYHLVEQGSFSSAARHMELTKSVVSKRIAKLEQELGVQLLYRTTRTLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    VY  + T +  +       SG ++I      G+ +L G + EF   YPDI 
Sbjct: 63  QSFFVHAKAVYKAVATAEESIVGLGKNLSGNIKITVPTISGELILPGVISEFNDKYPDIN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + LDN+ +DI  +  D AIR    +  SSLI RKLV  +    A+P YL     P   
Sbjct: 123 IDMELDNRFVDIVNERFDLAIRTGM-LPDSSLIARKLVDANWVVCASPKYLAKHGIPKQP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL KHN + +        E        D+         L  N+  ++    +LG G+  
Sbjct: 182 IELTKHNCLVYSYQETGAREWA--FKAGDKMYQVTVDGNLCTNNSSALRNVALLGQGVIY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
           +P  +V ++    +L+++ ++       +Y  Y
Sbjct: 240 VPRVLVYEDLKQGSLIQLFKEETAKCLGIYAVY 272


>gi|206579234|ref|YP_002236667.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288933639|ref|YP_003437698.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206568292|gb|ACI10068.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288888368|gb|ADC56686.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 299

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 136/301 (45%), Gaps = 16/301 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR G+ + AA +L ++  S+S  +  LE  +G  LF R  R + LTE G 
Sbjct: 6   YNQIRIFQSIAREGTISAAARKLEITPPSVSNALKLLEEHIGHPLFVRTTRRIELTETGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+     LET+   L++ + +PSG +RI  +      +L+  +  F   YP IQ+
Sbjct: 66  QLLEQTAAAVEVLETSLESLRDQNQEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           ++ + +  ++I  +  D  IR    ++   ++ R L+       YA+  YL     P   
Sbjct: 126 EISVYDGTVNIIEERFDLGIRFGDILE-GGVVARPLMKPFREGLYASSAYLAEYGVPAVP 184

Query: 184 QELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +L+ H LI +       ++P  + D     TV+ P        L  N    +      G
Sbjct: 185 ADLNHHRLIGYRFITNNRILPLILNDHGEQLTVEMP------GQLISNDIDVMADGIRHG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI  L + I +   D    + +MED       VY  YP+    T ++KA  +F+     
Sbjct: 239 LGIGRLFEPIWRLQPDREQFLPVMEDYWKTYPPVYLYYPKNAGRTKRVKALIDFLIAHTA 298

Query: 296 D 296
           +
Sbjct: 299 E 299


>gi|169795866|ref|YP_001713659.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157441|ref|YP_002319486.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483351|ref|YP_002325562.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301345664|ref|ZP_07226405.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301511009|ref|ZP_07236246.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301597460|ref|ZP_07242468.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|169148793|emb|CAM86661.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|213056601|gb|ACJ41503.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986839|gb|ACJ57138.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
          Length = 310

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 129/295 (43%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQKYHLAASPQYVAKYGTLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL++H  + +     +    +      +  +  P    L  N+  S+M   + G GI
Sbjct: 185 HPTELNQHKCLVYKGF--EGPNRWLVRKPNEEWVHYPITPLLSSNNAESLMTAALHGMGI 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD+++ +     +L++++ +      +    +   YP     +  ++A  ++
Sbjct: 243 VLFPDWLIGEALKKGDLIKLLPEYEVAIKSQPQHIAAIYPNVRHPSLNIRAVIDY 297


>gi|268590548|ref|ZP_06124769.1| glycine cleavage system transcriptional activator [Providencia
           rettgeri DSM 1131]
 gi|291313935|gb|EFE54388.1| glycine cleavage system transcriptional activator [Providencia
           rettgeri DSM 1131]
          Length = 313

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 129/296 (43%), Gaps = 16/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S Q+  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQMKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++ +       L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSSLNEATRKLQARSA--KGALTVSLSPSFAIQWLVPRLSGFNQAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   K      L   +L   ++    +P  L    +    +
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGKG-NWPGLRTDRLYAEYLMPVCSPSLLTGDSQLKIPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+             +W A V +   +  ++  Q    +    ++Q  V G G+
Sbjct: 185 DLAKHTLLHDSS-------RRDWQAYVKQLELQNVVNVQQGPIFSHSAMVIQAAVHGQGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + K   D   LV    +V+      Y    E   + GK+ AFR +I  +A
Sbjct: 238 ALTNNVMAKNEIDAGRLVCPFSEVLVSKNAFYLVCQENQADLGKIAAFRQWILGQA 293


>gi|53718318|ref|YP_107304.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|167917641|ref|ZP_02504732.1| putative LysR family transcriptional regulator [Burkholderia
           pseudomallei BCC215]
 gi|254187670|ref|ZP_04894182.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254296219|ref|ZP_04963676.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52208732|emb|CAH34668.1| putative LysR family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|157805694|gb|EDO82864.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157935350|gb|EDO91020.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 310

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 121/299 (40%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     SGK+R+++T D G++ L   L EF   +P+
Sbjct: 61  EGRLYLNCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRHQLLDWLDEFNTRHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   +   +   ++  D  D AIR   P    +LI R+L        A+P ++     P 
Sbjct: 121 VTFAVTASDSSSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCASPAFVDRYGMPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPLDLARFPCNVITVASGPLNVWRFTRGDDTQTYTVPLANAHETNDGGLTREWTIRGYGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           AL   + +  +     L  ++ D       ++  Y        +++   +F+  + AR+
Sbjct: 240 ALKSIWDIAADVRAGRLRVLLPDWRHHDAPLHAIYHSKRYMAPRVRVLLDFLVERFARE 298


>gi|114569738|ref|YP_756418.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114340200|gb|ABI65480.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 301

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 133/297 (44%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +   V  SGSF+ A+  L +  ++ISRQ++ LE  +G KL  R  R L LT+
Sbjct: 1   MDRLKAMSIVVQVVDSGSFSGASRALGIPLATISRQVTELEAHLGTKLLTRTTRKLALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +   ++ T+         P G+L +   +  G+ L+   +++FL+ YP 
Sbjct: 61  AGTAYLAAARRILDDIDETERAAAGEYHSPRGELIMTAPVAFGRLLVLPVIRDFLVAYPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L ++++ +  ++ D A+R+  P+  SS++  K+ +I     A+P  L    +P 
Sbjct: 121 IDVRLVLSDRNLHLMDEHIDMAVRIG-PLPDSSMVATKVGSIRTVVVASPALLAAHGKPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L     + F  L P     F       +         L V+S  + +     G G+
Sbjct: 180 SPEDLSDLPGVHFDILSPAGRWTFT--GPGGQTHDSAPRPRLTVSSADAAVWSACDGVGV 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y   D   N +L  ++E+       V+  +        KL++F +F   + R
Sbjct: 238 TRVLSYQCADAVKNGSLHVLLEEFEPAPLPVHLVHAGRGVQPAKLRSFLDFARSRLR 294


>gi|171056998|ref|YP_001789347.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774443|gb|ACB32582.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 322

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 124/285 (43%), Gaps = 3/285 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V  +GS + AA++L   +S++SR+++ LE   G +L  R  R LTLTE G  +   
Sbjct: 2   LFSRVIDAGSLSAAAKRLEWPKSTVSRRLAALERHFGERLVQRSTRKLTLTEFGQGVLEH 61

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +V  +++  Q        +PSG+LR++   D+   +L   L EF+  +P I +++ L 
Sbjct: 62  ARQVAAEVDDAQALAAHRQQRPSGRLRVSMPGDVATQVLGDILSEFMAAHPAIALEMDLS 121

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +D+  +  D A+R+ +    + L  R+L       Y AP YL      +   +L + 
Sbjct: 122 PRRVDLIAENFDLAVRMGELQDEALLSARRLAAFTAGLYVAPSYLARHGPIVHPTDLARA 181

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + +                +  D       ++    NS   ++Q    G G+  + D   
Sbjct: 182 DGLLLLGRGGDARPWQLHESAGDGHWTGLPVTRATANSPELLIQLARAGRGVTAVSDLYA 241

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                   LVR++ D   PS T +  +PE      + + F + + 
Sbjct: 242 APAVRTGALVRVLPDWCLPSVTAWAVFPERRLMPARTRVFIDALL 286


>gi|90578475|ref|ZP_01234286.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90441561|gb|EAS66741.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 301

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 128/297 (43%), Gaps = 11/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F +V    SF+ AA  ++L  S++SRQ+S LE  +G++L  R  R + LT
Sbjct: 1   MDL-LKSIETFQLVVEHKSFSGAAHAMNLVPSAVSRQVSELEKWLGVRLLQRTTRSIGLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G       + +   +E  +     ++    G+LRI   + LG+ +L   L  F   +P
Sbjct: 60  TEGRAYLAKMALISQNVEDLKGVTP-TTATLKGELRITAPLILGKYILPPILSLFRKQHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L L N+++++  +  D A+R+ + +  S LI R L    +   A P+Y++   E 
Sbjct: 119 EVKLSLFLTNRNVNLIEEGYDLALRVGE-LVDSELIARSLGEYKIKTVATPNYIQRNGEV 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  Q+L +H  +            +      D+ I       ++ N    + ++C+   G
Sbjct: 178 LIPQDLKQHTCLINSARQTPRRWTYQ---MNDKVIQIKVNGEIESNDSDVLREFCLQDQG 234

Query: 241 IALLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LPD+    +VK     + I+         +   +          +   +F+  +
Sbjct: 235 ILQLPDFQTNHLVKK-GKFIEILSQYSPAPQQISLLFTRNRLMGPAQRTLIDFLVSQ 290


>gi|296156122|ref|ZP_06838961.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893628|gb|EFG73407.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 301

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+ RVF  VA  GSF  AA  L L ++S+S  +  LE  VG++L +R  R + LT 
Sbjct: 1   MDKLDQYRVFIQVADMGSFIKAAHALELPRASVSAAVQQLEASVGVRLLHRTTRRVQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L      +   ++      Q    + SG+L++     + + L+   L   L  +P 
Sbjct: 61  DGAQLRERIRALLTDVDEIDQLFQVRQRQVSGQLKVDMPSRIARRLVVPALPGLLRNHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ +D+  +  DCA+R+   +  S+L+   L  I M   A+P YL+    P 
Sbjct: 121 LRLALNSTDRAVDLVQEGVDCAVRVG-TLYDSNLVAHSLGNIAMINCASPGYLREHGAPE 179

Query: 182 SIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              + LD H  + +          +++LA   R       S + VN+  + +  C  G G
Sbjct: 180 RPDDLLDGHLCVGYASPTTGRELPWDYLA-AGREAQISVASRVIVNNAENYISCCCEGIG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +P + V+       LV +M +       V   YP   + + +L AF  +
Sbjct: 239 LIQIPRFDVQHLLSAGTLVEVMPEFRAAPMAVSALYPHRRQRSRRLVAFIEW 290


>gi|304395216|ref|ZP_07377100.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304357469|gb|EFM21832.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 300

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 5/287 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F      GSFT AAE+LH++ S++S+ +S LET +G +L  R  R L LT+ GS
Sbjct: 6   LKDILPFVASVECGSFTAAAERLHVTGSAVSKSVSRLETRLGSRLLERTTRSLHLTDAGS 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +   L   +  L    + PSG+LR+A     G+  +   L  F   +P++ +
Sbjct: 66  AYYQTCLRILEDLAEAEAVLAAQRIIPSGRLRLAVPTTYGRLNVMPLLMPFCQQHPELAL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L ++ +D+  +  D A+R+   P   +SL  R +    M   A+P YL     P + 
Sbjct: 126 SLSLSDRFVDLFEEGVDVAVRIGGAPDLPASLGWRNMGREQMQFCASPAYLDREGRPENE 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H  I + + +    + + +     +P        L V    + +Q  + G G+A 
Sbjct: 186 AALLNHPAILY-ERVDGSTKPWLFTTEDGQPHWREVPFRLAVGDVDAQLQAVIAGLGVAQ 244

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +P ++++       L  I+  +     T+   +P   +   K+ A  
Sbjct: 245 MPSWLIQRAVAAGELEIILPQLQPDGLTLSVVWPRRKQFLPKVDALL 291


>gi|148256066|ref|YP_001240651.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146408239|gb|ABQ36745.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 291

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 119/278 (42%), Gaps = 5/278 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA   SFT AA +L +S S++S  I  LE  + ++L  R  R +  TE G +L 
Sbjct: 4   LAMFLAVAEERSFTRAAAKLGVSPSALSHAIRRLEQRMDVRLLTRTTRSVAPTEAGERLM 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +  + +++     L E   +P+G +RI T+    + LL   +   +  YPDI+++L 
Sbjct: 64  ETVAPAFDEIDARIAALTELRSRPAGTVRITTSEHAARTLLWPAIDRIVADYPDIKVELN 123

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +   DI  +  D  +RL + ++   +  R    + M    +P YL  C  P S  +L 
Sbjct: 124 VQSGLTDIVAERFDAGVRLGERLEQDMVAVRIGPRLRMATVGSPAYLAKCGAPKSPDDLT 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I    +     +         R +       + +N    I+     G G+A L D 
Sbjct: 184 RHACINLRMVNGSIYQWE--YGRGGRELKVKVDGPVVLNDVDLIVAAASAGHGLAHLVDD 241

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
            V        LVR+++D   P    Y  YP   + +  
Sbjct: 242 RVAPLLAKGALVRVLDDWCEPFDGYYLYYPSRRQPSAA 279


>gi|157371338|ref|YP_001479327.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323102|gb|ABV42199.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 299

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLISFLMVARERSFTKAAAKLGVSQSALSHAIRGLEERLELRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E+    L E   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  ERLLNSIGPRFAEIESELDALSEMRARPAGNIRITAGEHAVDSVLWPVLKTFLADYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ LDN   DI     D  IRL + +    +  R    + +   A+P Y +    P + 
Sbjct: 125 VEITLDNTLTDIVSGRFDAGIRLGEQVAKDMVAVRIAADMRLIPIASPAYFEQYGTPTTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           QEL  H  I     +P     + W    D    + R+   L  NS    +    LG GIA
Sbjct: 185 QELQNHRCINM--RLPTMGGLYAWEFEKDGREIKVRVDGQLTFNSLRQRIDAARLGFGIA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P   V D   +  LV+++++        Y  YP   ++T     F   +
Sbjct: 243 FVPQDSVTDELADGRLVQVLDEWCPRFPGYYLYYPSRRQHTTAFALFVEAL 293


>gi|49085150|gb|AAT51256.1| PA1961 [synthetic construct]
          Length = 312

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 132/299 (44%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPPDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E     + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMADQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +   R 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGRRL 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               ++L+    +  G +          +          R   L V+ ++   +  V G 
Sbjct: 181 -EHPEDLEDLPFL--GAIHNDRKVHATLIGPDGSRYQLEREPRLGVDDFVLRKKAAVAGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ LLP+        + +LVRI+     P  T+   Y         ++A  +F+    +
Sbjct: 238 GVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAYLPRSSQIPAIRALIDFLVEALQ 296


>gi|50120420|ref|YP_049587.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610946|emb|CAG74391.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 309

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 140/301 (46%), Gaps = 16/301 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +AR GS T AA +L ++  S+S+ +  LE  +G  LF R  R + LT+ G 
Sbjct: 6   YNQIRIFQSIAREGSITAAARKLEITPPSVSKSLKLLEQHIGHPLFLRTTRRIELTDTGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L + TS     LE     ++  + +PSG +RI  +      +L+  + EF   YP IQ+
Sbjct: 66  QLLQQTSRAVESLENALESIKSLNQEPSGLVRITLSRFAYLLILKPFMAEFCHSYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           ++ + +  +++  +  D  IR    +   S++ R+L+       YA+  YL     P+  
Sbjct: 126 EISVYDGTVNMIDERFDLGIRFGDIL-GESVVARQLMKPFREGLYASAAYLAEHPTPVLP 184

Query: 184 QELDKHNLITFG-----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            +L +H LI +       ++P  ++D     TVD P        L  N    +      G
Sbjct: 185 ADLHQHQLIGYRFITNNRILPLMLDDQGEKLTVDMP------GQLISNDIDVMADGIRSG 238

Query: 239 SGIALL--PDYIVKDNPN-LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI  +  P Y ++ +    + +M         VY  Y ++     ++KA  +F+ +K +
Sbjct: 239 LGIGRMFEPVYELQPDKEQFIPVMMPYWKTYPPVYLYYLKSTGKAKRVKALIDFLIMKTK 298

Query: 296 D 296
           +
Sbjct: 299 N 299


>gi|324005614|gb|EGB74833.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
          Length = 305

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEKTLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAKHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|260599102|ref|YP_003211673.1| hypothetical protein CTU_33100 [Cronobacter turicensis z3032]
 gi|260218279|emb|CBA33234.1| hypothetical protein CTU_33100 [Cronobacter turicensis z3032]
          Length = 308

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 135/294 (45%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +L +F  V  + SFT AA  L  +++ +S  I  LE+E+G+ L  R  R LTLT+ 
Sbjct: 9   LNLSRLAMFVAVVDAKSFTGAAAALGQTKAVVSFNIRQLESELGVTLLLRSTRRLTLTDA 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++ +  +         ++Q S    SG+LR+ TT +   +++   L  F   +P +
Sbjct: 69  GERLYQRSLLLLRNAGELLEDVQASHEGFSGELRVTTTPEYASHVVGPALAAFSRAHPAL 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+    ++  D+  +  D AIRL   +Q S+     +    +   A+P +L+      +
Sbjct: 129 RIRHFSSSQHADLISERVDVAIRLG-TLQDSAYRAALISRFDIFPVASPAWLERH-PIST 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L +   +    L                     R   +  +   ++M + + G G+A
Sbjct: 187 PEALSQAQWLVHTRLASPLRWALTGPHDETLWFEITRPPAIAADGAGALMSFALEGCGVA 246

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP ++V    +   LVR++     P+  VY  YP+A   +GK++ F +F+  +
Sbjct: 247 LLPAWLVNTALEEGKLVRLLPAYRFPAQGVYAVYPDARHVSGKVRGFIDFLRDR 300


>gi|126736766|ref|ZP_01752504.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           CCS2]
 gi|126713737|gb|EBA10610.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           CCS2]
          Length = 301

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 136/299 (45%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D ++ F  V   GS + AA  + +S +  S +IS LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNIQTFVRVYELGSMSAAARDMRISAAVTSARISQLEQHLGVRLFQRTTRSLTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +    +V   + + + ++ + +  P G L +A  + +G+ L+  ++ EFL LYP
Sbjct: 60  EQGQAFYGGACDVLEAVASAETQIVDITDNPKGSLYVAAPLGVGRRLIAPHVPEFLRLYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++L L ++ +D++ +  D A  L +P + S+L  RK+  +     A+P Y++    P
Sbjct: 120 DINMRLRLTDRKVDLTTEGLDLAFFLGQP-EDSNLRIRKIADVQRILCASPAYIRTKGNP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVL 237
                L  D H  I         + +F W           R+    + +    +  + + 
Sbjct: 179 ADGDALIADNHECINLRY---PGVAEFQWRLMTGEGAKRFRVTGRFESDDGDVLTDWALS 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+GI + P + V D+     LV +  D       +   +        K + F  F+  +
Sbjct: 236 GNGIVMKPLFEVSDHIKAGRLVPVAVDTPPEPIQMACLFTHRRGQDPKSRLFMEFMIER 294


>gi|260899478|ref|ZP_05907873.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308109207|gb|EFO46747.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
          Length = 293

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L++F  V + GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT +
Sbjct: 1   MKIDDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNK 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L++   +    S++  GK+++    +  ++ LQ  L EF   YP +
Sbjct: 61  GDAYYQDLQKVLTLLDSANQQASNESIEVKGKIKLGLLPETYEH-LQPILFEFQDQYPQV 119

Query: 123 QIQLI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +  ++N  ID+     D A+     +  S ++ RK++T+     A+P+YL+    P 
Sbjct: 120 ELDIRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPA 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++ L  H  I F    P    D  W         +P+   L  N+   I    VL  GI
Sbjct: 179 TLEALSDHQCICF--RWPNGNVDNLWHFQEQNVALKPK---LISNNIGFIKSSTVLDRGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +P  +VK   ++  LV+++        T +  YP+        +     +
Sbjct: 234 SYIPKLLVKNELESGALVQVLSQYAVTEETGWLLYPQPKTLNQASRLLIEHL 285


>gi|237731016|ref|ZP_04561497.1| LysR family transcriptional regulator [Citrobacter sp. 30_2]
 gi|226906555|gb|EEH92473.1| LysR family transcriptional regulator [Citrobacter sp. 30_2]
          Length = 315

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 127/288 (44%), Gaps = 6/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  +  +GS + AA+Q+  +Q+++SR++  LET +G+KL  R    + LT+ G +
Sbjct: 15  ELMRTFVRIVEAGSLSAAAKQIGTTQATVSRRLQSLETLLGVKLLMRTTHAMKLTDDGER 74

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++       +  L  +  +P G LR+      GQ  L   L +FL  YP + ++
Sbjct: 75  GYQHAKKIIDAWLALEDGLNVTEDEPVGTLRVRAPHAFGQQQLLEPLLQFLSRYPQLAVE 134

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L++K +D   D  DCAIR+   +  S+ +   L  +      +P  L+   E    ++
Sbjct: 135 WMLNDKTVDFLSDNIDCAIRVGAEVDPST-VSVLLAEVPRSMVVSPGLLEQYGELSHPEQ 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L     I         +   + L   + P+       L  +S        + G G+ ++ 
Sbjct: 194 LSALPWIAVNTFYQHSISLLHQLR--NEPVTLNISPRLSTDSIYVARNAALAGLGVTIVS 251

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++V ++     LV ++ +       V+  YP A     +L+ F   +
Sbjct: 252 SWMVAEDIANGRLVALLPEWHAAPLPVHLVYPWARYYPTRLRKFLALM 299


>gi|282599652|ref|ZP_06257329.1| contact-regulated protein A [Providencia rustigianii DSM 4541]
 gi|282568102|gb|EFB73637.1| contact-regulated protein A [Providencia rustigianii DSM 4541]
          Length = 326

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 11/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AAEQ  ++ S++SR +  LE +V   L YR  R + L+
Sbjct: 28  MKITLDELQTFISVVDSGSITRAAEQQCMTVSTVSRALLRLEEKVKTTLLYRTTRSIKLS 87

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   E+ +  +  +  L      PSGKLRI  +     +++   +  F   YP
Sbjct: 88  EEGIAFLQKAREIVNLAQEAEDLLSARQSIPSGKLRIDASTPFLTHVIAPLIPLFYERYP 147

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++  +    ++     D A R+   ++ SSL    L        A+P YL+    P
Sbjct: 148 QVELEINNNEGITNLLEKKTDVAFRIG-TLKDSSLSATLLGYSQKRLVASPTYLEKYGTP 206

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
            +I++L+KH L+ F    P+ +  +    +    +   P I+     S   +    + G+
Sbjct: 207 QNIEDLNKHCLLGF--TTPESLNYWPIEDSSGNLLKIHPNIAGA---SGEVLYHLALQGT 261

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           GI    D++  D   +  LV+++E         +   Y      + +L  F +FI
Sbjct: 262 GILCSADFVTLDAFASGRLVQVLEHKTISMKQPINAVYYRNQAVSPRLSCFIDFI 316


>gi|21240858|ref|NP_640440.1| LysR family transcriptional regulator [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106131|gb|AAM34976.1| transcriptional regulator lysR family [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 303

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 8/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R+F  +    SFT AA  + + +S+ ++ I+ +E  +G++L  R  R +  T 
Sbjct: 1   MDRFDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+    +   ++  +   +   V P G LR+     L ++ L   L  F   YP 
Sbjct: 61  DGELFHQPCMRILDDVDDAEGGFRG--VAPKGLLRVDVQGTLARHFLLPGLPAFFARYPQ 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +   ++ +D+  +  DC +R   P++ S L+ R++  +     A P YL+    P 
Sbjct: 119 IQLVMSESDRWVDLVEEGIDCVLRYG-PLRDSELVARRVAMLERLTCATPQYLQCFGMPT 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++ LD+H ++    +    +       T          S L V    S +    LG GI
Sbjct: 178 QLEALDQHRMVGLRSITTGVVTPLE-FQTAQGLRTFALPSPLSVTGTESYLAGIRLGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           A +P + V  +     LV I+ D   PS  V   Y  A + + +++ F ++
Sbjct: 237 AQVPRFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVFLDW 287


>gi|298682305|gb|ADI95367.1| transcriptional regulator protein [Pseudomonas putida]
          Length = 254

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 8/258 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F     +GSF+ A + LH+S   + + ++ LE  +G++L  R  R  +LT+
Sbjct: 1   MDRFTSMQAFVKAVETGSFSAAGKVLHMSAQLVGKHVNSLEERLGVRLLTRTTRTHSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     + H +E  +     +   P+G+L+I   +  G + L   L EF+  YP 
Sbjct: 61  FGQSFYARAKLILHDVEEAENLAAVALASPNGRLKINAPVSFGMHALAPVLPEFMKAYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L N+ +D+  +  D   R+ + +  S LI R L    +   A+P YL+    P 
Sbjct: 121 VNIELNLSNRAVDLIDEGYDVIFRVGR-LADSGLIARVLAPYQLVLCASPDYLQAHGAPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + F     +       L   +  +  P  S    +    ++   + G G+
Sbjct: 180 TPDDLRHHECLGFSHTELRTHWV---LEGDEGRVEVPVQSRFVSDHGEPLLCAALAGLGV 236

Query: 242 ALLPDYIVKD---NPNLV 256
            L P  +V D   +  LV
Sbjct: 237 MLQPVELVSDYLESGRLV 254


>gi|258545444|ref|ZP_05705678.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
 gi|258519306|gb|EEV88165.1| LysR family transcriptional regulator [Cardiobacterium hominis ATCC
           15826]
          Length = 295

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 124/286 (43%), Gaps = 5/286 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+    +F  +A  GS   AA +L L  S++S  +  LE  +G++LF+R  R + LTE G
Sbjct: 5   DFADFAIFVAIAEEGSLRAAAARLDLRPSTVSHGLRALEARLGVRLFHRTTRSVALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +     LE     + +    P+G++R++    +   +L   L+ F   +PD++
Sbjct: 65  QALLARIAPALSTLEAADEAVNDFRAHPTGQVRLSVPRGIASCVLLPKLRAFAERFPDVR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +  +N  +DI     D  +RL + +    +  R    +     AAP YL  C  P S 
Sbjct: 125 LDIAAENGFVDIVSAGFDVGVRLGESVARDMVALRITPPVQAVIVAAPDYLARCPAPQSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H  I F  L    +  + ++    +   +   S L ++    ++   + G G+A 
Sbjct: 185 QDLAGHRCIGFRQLGGGRLYRWEFVRD-GQAFEQAVSSALVLDDPELMLDAAMRGLGLAY 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             D   +    +  L+ ++E  +      +  YP   + +  L+A 
Sbjct: 244 ALDVFCRAALTDGRLLPVLEGWLPRYDGFFLYYP-NRQVSAALRAL 288


>gi|293392435|ref|ZP_06636757.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291425089|gb|EFE98296.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 299

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 129/292 (44%), Gaps = 8/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VA   SFT AA +L +SQS++S  I GLE  + ++L  R  R + LTE G
Sbjct: 5   NFNDLLSFLMVAEERSFTRAAARLGVSQSALSHAIRGLEERLDLRLLTRTTRSVALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++E   + L +    P+G +R+        ++L   L  FL  YPDI 
Sbjct: 65  ERLVNAIGAHISEIEHQLVALGDMRATPAGNIRLTAGEHAIHSVLWPVLNPFLQRYPDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLS 182
           +++I DN   DI     D  IRL + +    ++   +   +   A  +P Y     +P +
Sbjct: 125 VEVIADNSLTDIVSGRFDAGIRLGEQLAKD-MVAIPIGPQLRFVAVGSPDYFAKHGQPET 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            Q L +H  IT    +P     + W    D      R+   L +NS    +     G GI
Sbjct: 184 PQALQRHRCITM--RLPTQGGLYAWEFEKDGRTVNVRVDGQLTINSLPQRIDAARSGLGI 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +P+  V  +     L+ +++D   P    Y  YP   ++T     F + +
Sbjct: 242 AFVPEDTVAADIANGQLLNVLDDWCAPFPGYYLYYPSRRQHTTAFSLFVDAL 293


>gi|172065646|ref|YP_001816358.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997888|gb|ACB68805.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 297

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 135/295 (45%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L VF  VAR  SFT AA +L +SQS++S+ +  LET +G++L  R  R ++ TE G
Sbjct: 5   NLNDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLETRLGVRLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    ++E     + +   KP+G +RI  T      ++   L+  L  YPDI+
Sbjct: 65  EELFQAVAPRIDEIEMKLAAVADFRDKPAGVVRITATEHPIDTIIWPKLRRVLPDYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D    +I  +  D  +R    +    +  R    I M   A+P YL   + P + 
Sbjct: 125 VELSVDYGLSNIVEERYDIGVRYGDQVAKDMIAVRISPDIRMTMVASPAYLDGRKPPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ +T      K +  + W     R   + R+   +  N+   ++Q  + G GIA
Sbjct: 185 QDLLDHDCVTLRLATAKGI--YAWELKKGRNEIQARVNGRITCNTQPHMVQAALDGFGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + IV D+     L  +M D        +  YP   + +       + +  +A
Sbjct: 243 FVTEDIVLDHVRSGQLRIVMPDWCPVFPGYHAYYPSRRQASRAFSIVIDALRHRA 297


>gi|170736233|ref|YP_001777493.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818421|gb|ACA93003.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 313

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 125/296 (42%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    E     +   +    G LR++  ID G  ++   +      +P 
Sbjct: 66  AGRVFYDACRDIVRATEAALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAVVALRDRHPA 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+ +++ +D+  D  D AIR+ + +  S+    +L T      A+P ++     P 
Sbjct: 126 LAVELVANDRVVDLVADNLDVAIRIGR-LADSNYRAVQLGTYEKWLVASPAFVARHGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +    L      + +             ++ +  N+  +     + G G 
Sbjct: 185 DPDALAALPFVMLSSLPRPHTLELD--DARGGRASVRCVAPVVSNTATACRAIVLAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LL D+   D+     LVR++    T    ++  YP     + K++AF   +  K 
Sbjct: 243 GLLTDFSTADDVAAGRLVRLLPGWRTAPAGIHAVYPSTRLPSPKVRAFVEAMKGKL 298


>gi|157371532|ref|YP_001479521.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323296|gb|ABV42393.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 291

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 13/291 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  VAR G+   AA +LH+ Q+++ R+I+  E  +G KLF R  +  +L+  
Sbjct: 2   MNWDDARFFLAVARCGTLRKAANELHVDQATVGRRITAFEESLGSKLFIRTPKSFSLSPL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      + + ++    +         G +RIATT  + +  +   LK     +P I
Sbjct: 62  GEEMLADVMNMENAVQAIGRKATSGDDSLCGNVRIATTDTMAEAFVIPALKALREQHPLI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++      DIS   AD AIR  +P +S  LI +++ TI M  YA   YL     P  
Sbjct: 122 TVTMLTAVNISDISYRGADLAIRGARP-ESDELIIKRMATIEMGLYATQDYLDKHGLPTK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  H+L+ F    P+ +   +W       + +P +  LQ NS L +      G GI 
Sbjct: 181 GDHLSGHDLLMF----PRELVPRHWNDFCGEALIDPNV-VLQCNSQLLLRSATRNGLGIG 235

Query: 243 LLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LL  ++   +P+LVRI     D +     ++      L+   +++A    +
Sbjct: 236 LLSSFLADKDPDLVRIFPENKDWV----DIWLVLHPDLQRAARVRAVVQAL 282


>gi|194364179|ref|YP_002026789.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194346983|gb|ACF50106.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 299

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 130/294 (44%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L+ F   A + SF        +S S+  + ++ LE  +G++LF+R  R +TLT +G
Sbjct: 6   NLANLQTFVHAADTRSFVETGRLQGISASAAGKCVARLEHALGVRLFHRSTRSITLTAEG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +  + +  + EL +    PSG LRI     L  +L    + EF+  YPDI+
Sbjct: 66  QLFLARCRRILDERDAARTELAQPHAAPSGTLRIGLP--LVGDLTLPLMAEFMAAYPDIR 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   ++ +D+  +  D  +R+ +P   S +  R+L        A+P YL+    P + 
Sbjct: 124 LDLDFSDRLVDVIEEGFDAVLRVGEP-SDSRMNARRLGVFPRRIVASPAYLQRRGVPRAP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H L+ +       +E +  +        +     +  N+  + +   +   G+A 
Sbjct: 183 ADLLQHTLLHYRFPSTGKLELWP-IQWPGNEAPQELPVHMVANTIEARVALALRDIGLAF 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +P + V+D   +  L+ ++++ +      +  +P       KL+ F +F+  + 
Sbjct: 242 VPVHSVRDALADGRLLTVLDEHVHSCGIFHLLWPSGRHVLPKLRVFIDFVSARL 295


>gi|254248982|ref|ZP_04942302.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875483|gb|EAY65473.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 313

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 125/296 (42%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLAIFVSVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    E     +   +    G LR++  ID G  ++   +      +P 
Sbjct: 66  AGRVFYDACRDIVRATEAALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAVVALRDRHPA 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+ +++ +D+  D  D AIR+ + +  S+    +L T      A+P ++     P 
Sbjct: 126 LAVELVANDRVVDLVADNLDVAIRIGR-LADSNYRAVQLGTYEKWLVASPAFVARHGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +    L      D +             ++ +  N+  +     + G G 
Sbjct: 185 DPDALAALPFVMLSSLPRPHTLDLD--DARGGRASVRCVAPVVSNTATACRAIVLAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LL D+   D+     LVR++    T    ++  YP     + K++AF   +  K 
Sbjct: 243 GLLTDFSTADDVAAGRLVRLLPGWRTAPAGIHAVYPSTRLPSPKVRAFVEAMKGKL 298


>gi|295700612|ref|YP_003608505.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439825|gb|ADG18994.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 308

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 120/275 (43%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMEQRAGVALVNRTTRRMMLTPEGELYLERARRILDEIDELAELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +   P G LR+  T+  G++ +   +  F+  YP + +QL L      ++ D  D  I
Sbjct: 87  GSAKKTPKGLLRVNATLGFGRSHIGPAISRFVARYPQVSVQLQLSVTPPPLTDDSFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L        AAP YL     PL+  +L +HN I    GD      
Sbjct: 147 RFGEP-PDTRVVARRLAPNRRLLCAAPSYLAAHGTPLTAHDLTRHNCIGIRQGDEAYGVW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
              +      +         L  N     +++ + G GI +  ++ ++      +LV+++
Sbjct: 206 RLTSGRGAARKTEAVRIKGTLTTNDGEIAVKWALEGHGILMRAEWDIRQYLAEGSLVQLL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D  TP+  ++  Y    + + +++AF  FI  + 
Sbjct: 266 PDHDTPNADIFAVYSPRHQMSNRIRAFVEFIAREL 300


>gi|326388107|ref|ZP_08209710.1| LysR-family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207273|gb|EGD58087.1| LysR-family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 293

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 126/297 (42%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R F  VA   SF  AA    +S ++ SR IS +ET +G+ L  R  R + LT 
Sbjct: 1   MDQLDAIRTFIAVAEHKSFAEAARTRRISPTAASRAISDMETRLGVLLLRRTTRSVQLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+           +L++    L   + +P G L +   +  G+  +     + +  +P 
Sbjct: 61  EGATYLEHCRLALAELDSAASSLSGENTQPRGVLIVTAPVVFGRMKVLPVTLDLMRRHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L ++ + +  +  D A+R+   +  S+L   ++        A+P YL+    P 
Sbjct: 121 LSVRLTLTDRVVRLVDEGIDVAVRIAH-LADSALRAVRVGETRRVLVASPAYLEERGYPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+  L  H+LI F +      ++  W  + D  +       L  NS  + +   + G GI
Sbjct: 180 SVAALHDHDLIAFDNFA----QNGEWRFSTDGRMAIRFEPRLLTNSVDAAIDAALAGGGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                Y V+   ++  LV ++ +   P   V   +      +  ++AF   +   ++
Sbjct: 236 TRALSYQVERHVESGRLVPLLPEHDPPQVPVSLVFQANRARSANVRAFVEAMRAASQ 292


>gi|259418855|ref|ZP_05742772.1| putative LysR substrate binding domain protein [Silicibacter sp.
           TrichCH4B]
 gi|259345077|gb|EEW56931.1| putative LysR substrate binding domain protein [Silicibacter sp.
           TrichCH4B]
          Length = 302

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 128/294 (43%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L    VVA   +FT AA +L LSQS++S+ +  LE  +G++L  R  R ++ T  G
Sbjct: 5   DMADLTALVVVAEERNFTRAAARLGLSQSALSQIVRRLEERLGVRLLARTTRSVSPTPAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  S +   ++ +  EL     KP+G +R+ +     + +L   L   L  YPDI 
Sbjct: 65  EQLVQRLSPMLRDIDLSIAELSNFRDKPAGPIRVTSVEHAAKTILNPALASLLPEYPDIS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I+D    DI  +  D  +RL + ++   +  R    I M    AP Y  + R P   
Sbjct: 125 VEIIIDYGLTDIVAERFDAGVRLGESVEKDMISVRISPDIPMAIVGAPEYFASNRPPEDP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L +H  I     +P       W  + D      R    L  NS   I    + G+G+A
Sbjct: 185 EQLVEHRCINL--RLPTSGTLNAWRMSKDNQDIRVRTQGPLIFNSIDLIRDAALRGTGLA 242

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP   VK +     LV ++     P    +  YP    ++   K F   +  +
Sbjct: 243 YLPVDQVKSHLETSQLVHVLAVNTPPLPGYHLYYPSRRHSSPAFKLFVEAVRHR 296


>gi|253689850|ref|YP_003019040.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756428|gb|ACT14504.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 302

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 124/292 (42%), Gaps = 12/292 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L+LT+ G K   
Sbjct: 8   EVFVTIIDRGSMIAAAETLDMSRAMVTRYLAEMEAWAGARLLHRTTRKLSLTDAGEKTLA 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              E+       +IE        SG LR++ +  L Q  L   +  FL  +P + I L +
Sbjct: 68  RCREMLALTADMRIEADTDDATLSGLLRLSCSQSLAQGALGMAITTFLRHHPRVAIDLQM 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N+ +++  +  D A+R+   +   +LI R L        A+P YL     P  + +L  
Sbjct: 128 NNRAVNLVEERIDLALRITNEL-DPNLIARPLARCESVLCASPSYLNEHGIPRQLTDLSI 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+              +  D     P    L  N  L ++   + G+GIAL P Y 
Sbjct: 187 HNCLTYTYFGKSLWH----FSRDDEKFTIPVSGNLSGNESLVLLAGALEGAGIALQPRYS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           V        LV ++ +    +  +Y  Y    +    L+   +F+     DW
Sbjct: 243 VTPYLATGQLVALLPEYRPQAMGIYGIYTSRRQMPAALRTLLDFLV----DW 290


>gi|116250969|ref|YP_766807.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255617|emb|CAK06698.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 321

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 136/298 (45%), Gaps = 8/298 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           S D ++ + V   V  +GS +  A +LH   +++SR+++ LE  +G++L  R  RGL +T
Sbjct: 23  SMDRFEAMSVLLAVVEAGSLSAGARRLHAPLATVSRKVADLEKHLGVRLVLRTRRGLAVT 82

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G      +  +  +L+  + +         G L +   I  G+  L     EFL   P
Sbjct: 83  EEGRAFVAASRRILEELDAAERQANGDYSALRGGLHVTAPIAFGERHLLPIALEFLKEQP 142

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++L L ++ + ++ ++ D A+R+   +  S+LI  ++ T+     A+P YL     P
Sbjct: 143 DINLRLSLVDRQLSLADEHVDVALRIGH-LADSALIATRVGTVRRVICASPDYLARRGVP 201

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H+ I+F         ++ +         EPR   L VN+  + +Q  + G G
Sbjct: 202 RQPDDLAQHDGISFQGFA--TAPEWRYRRDGAAFAVEPRYK-LAVNTTEAAIQAALAGIG 258

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  +  Y + D   +  L  ++ +       V   +  A     K++ F ++I  + R
Sbjct: 259 IIRVLSYQISDQLRSGALQELLTEFAPEPLPVNVVHGPADPLPLKVRCFLDWIAPRLR 316


>gi|307319194|ref|ZP_07598624.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306895301|gb|EFN26057.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 301

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 130/296 (43%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF      GSF  AAE L LS   + + +  LE  +G++L  R  R  +LTE
Sbjct: 1   MDRLTSMAVFVKAVDLGSFAAAAEALGLSGPMVGKHVRSLEDRLGVQLINRTTRRHSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  + +       +   +P GKLR+   + LG++ +   L E    YP 
Sbjct: 61  FGHVYYERCRVVLAEAQAADALASDQRSEPRGKLRVTMPVHLGRHCVTPVLLELARKYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L  +++ ID++ D  D +IR       + LI R++    M   A+P YL++   P 
Sbjct: 121 LELDLSFNDRIIDLAEDGFDLSIRTGPLGDRAGLIGRRVARQPMIVCASPSYLESNGHPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L +H+ + +    P     F        P+G       +++   +I    + G G+
Sbjct: 181 TPEDLAQHSAVVYRRSGPVPHWLFP--RQGQSPVGVMPFHRFRLDDLDAIADAAIRGMGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LP ++V+   +   LVR++ +     +  +  + +      K++   + +  + 
Sbjct: 239 AWLPYWLVRGRIETGTLVRLLPEHPPFLYECHAVWLQTPHLPRKVRVAVDALAAQL 294


>gi|148974117|ref|ZP_01811650.1| Hypothetical transcriptional regulator, LysR family protein
           [Vibrionales bacterium SWAT-3]
 gi|145965814|gb|EDK31062.1| Hypothetical transcriptional regulator, LysR family protein
           [Vibrionales bacterium SWAT-3]
          Length = 312

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 124/312 (39%), Gaps = 22/312 (7%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V   GSF  AA   +LS + IS+ I  LE+ +  +L +R  R  +LT+
Sbjct: 1   MDKLTSMKVFVYVVEQGSFRSAANHFNLSATMISKHIHHLESSLNSQLIHRTTRKQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   +   +  +Q    +P G ++I   +  G  +L   + +FL   P 
Sbjct: 61  SGQLYYRECKRILEDISNAENLIQTLENQPQGTVKINCPVTYGNKVLAPIVAKFLANNPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L+N  +D      D  +R+   +  SSL+ R L    M   AAP YL    E  
Sbjct: 121 INVELVLNNDLVDPYSSDIDLIVRIGD-LSDSSLVARYLGDYEMCYCAAPEYLNQHAEIR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL----------------ATVDRPIGEPRISCLQV 225
            +++L +H  + F     + +                             G      L  
Sbjct: 180 VLEDLAQHPSLGFSYSSRRDVNGREPQLRNTLNSEPQLLAPKNHQAAHSSGNKGQVRLMS 239

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           N+   +    + G G+ L P  +V +      L+ I+  +      ++  Y +  + + K
Sbjct: 240 NNGDVLRYAALQGVGVLLQPTILVAEEIERGALLEILPGMAPLPKPIHLLY-KTKQLSLK 298

Query: 283 LKAFRNFIFLKA 294
            + F  F+  + 
Sbjct: 299 NRTFVEFLLAEL 310


>gi|227818725|ref|YP_002822696.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36958979|gb|AAQ87404.1| Transcriptional regulators, LysR family [Sinorhizobium fredii
           NGR234]
 gi|227337724|gb|ACP21943.1| predicted transcriptional regulator LysR [Sinorhizobium fredii
           NGR234]
          Length = 296

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 122/288 (42%), Gaps = 5/288 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  VAR  SF  A E+  ++ S+IS  I  LE  +G++L  R  R ++LTE G
Sbjct: 5   ELSELAAFAAVARHKSFRMAGEERGVTASAISHAILNLENRIGVRLLNRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       + ++ +    L      P G++RI     +   ++   +   L   P++Q
Sbjct: 65  DLLQSYLDPAFGEITSALDALNRFRDTPFGRVRINVPNSVAPFVIGHVIGPLLAKNPNLQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +DI  +  D  IR  + +    +  R    + +    +P Y +    P++ 
Sbjct: 125 LEVSATDRLVDIVKEGFDAGIRFGERVSEGMIAVRIKPQLRLVVVGSPAYFERRSVPITP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I   ++ P             + +       L ++ +  +++  + G  +A 
Sbjct: 185 HDLKRHFCI--QNMFPSGARYAWDFKKGGQSVSFQPTGPLSLDDHELMVEAALSGVALAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + +  V+    +  LV++++D   P   +Y  YP     +   +A  +
Sbjct: 243 VWENRVQKHIADGELVQVLDDWCQPEEPLYLYYPSRRHLSAGFRALID 290


>gi|311105892|ref|YP_003978745.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760581|gb|ADP16030.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           82 [Achromobacter xylosoxidans A8]
          Length = 307

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 128/300 (42%), Gaps = 16/300 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA++ SF+ AA  L + +S++SRQ++ LE  VG++L  R  R + LT+ G 
Sbjct: 4   LQGMELFVEVAKTRSFSRAAVILGIPKSTLSRQVAELERSVGLRLLSRTTRKVELTDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +    ELQ+    P+G LR+    D G + L  +  EF   YPD+  
Sbjct: 64  LYFERCQRIVAEAQIAHEELQKLVDTPAGPLRVNMPADFGTDFLAESFMEFSRRYPDVTF 123

Query: 125 QLILDNKD-IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L N D         D +I + + +  SS I R L  +  H YA+  YL+   EPL  
Sbjct: 124 FLDLANPDHAQRVFQTCDISIEIGE-LPDSSQIARLLGMLPAHLYASREYLEKHGEPLHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  I F        +   W  T  R   E    +   VN      +  +LG+GI 
Sbjct: 183 SDLTRHECIEF--RAKGAGQVTPWPLTDGRQHIEFTPGNRFSVNGVAMARRLAILGAGIV 240

Query: 243 LLPDYIV------KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +L    V      + +  L R++ D       VY    E      K + F  F+  +  D
Sbjct: 241 VL----VGGQQAEQQSGQLQRVLPDWQLGPLPVYAVT-ETRLLPAKTRIFIEFLMERLGD 295


>gi|257140404|ref|ZP_05588666.1| DNA-binding transcriptional activator GcvA [Burkholderia
           thailandensis E264]
          Length = 315

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 13/301 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LRVF   AR  SF+ AA +L ++  ++S Q+  LE E+G+ LF RH + L LT
Sbjct: 1   MPI-LNALRVFEAAARHESFSRAANELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +  +        L     E++ S      +L ++T        +   +  F+  +P
Sbjct: 60  DAGGRYAQQVRAALALLADATREIRASDRDK--RLAVSTLPSFAARWITPRIGPFIEQHP 117

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L   +  +D + D  D AIR    +    L    L+        AP  L     P
Sbjct: 118 EIDLELRASDTLVDFARDDVDVAIRFGYGV-YPGLYVEPLLDETFFPVCAPT-LNGGVLP 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G G
Sbjct: 176 ETPADLVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQG 230

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IAL+   +         +VR+ +      +  +F  P +L  T +++AFR ++  +   +
Sbjct: 231 IALVRRSLAMPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLLDEIARF 290

Query: 298 K 298
           K
Sbjct: 291 K 291


>gi|209544929|ref|YP_002277158.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532606|gb|ACI52543.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 305

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 129/292 (44%), Gaps = 6/292 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L  F  VAR  SFT AA +L  S S++S  I  LE  +GI+L  R++R ++++
Sbjct: 3   MRDGLDDLMAFACVARVRSFTRAAAELGTSTSNLSHTIKRLEGRLGIRLLQRNSRSVSVS 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L R       ++E     LQ      SG +R+  T    + +++  L  F+  +P
Sbjct: 63  EAGNELLRSIGPELERIENAVGRLQLKRSSISGAVRLTATRQAYEMVIRPVLPAFVAAHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D  +++++D    D+  D  D  IRL + I+   +  +    + M   AAP YL     P
Sbjct: 123 DATVEVLIDYAFRDVIADQFDAGIRLGEKIEQDMIALKVGPDLRMAVVAAPSYLARHGTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              ++L  H  I +  +    +  + W    +    E R+   L  N    ++   + G 
Sbjct: 183 RHPRDLVNHRCINYRMVASGAI--YAWEFEENGLAFEVRVPGPLTFNEPQLMLDAALSGL 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GIA L +  V  +     LV ++ +   P    Y  YP  L+      AF +
Sbjct: 241 GIAYLLENDVAPHVGSGGLVNLLAEWTAPFPGFYLYYPSRLQMRPVFGAFLD 292


>gi|239817713|ref|YP_002946623.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804290|gb|ACS21357.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 314

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 125/295 (42%), Gaps = 6/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F  +  +GS + AA Q+  +Q ++SR++  LE  +G++L  R    + LTE G 
Sbjct: 12  IELMQTFVHIVEAGSLSAAALQMGATQPTVSRRLQALERSLGVRLLRRSTHAMKLTEDGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    E+       + +L+    +P G LR+     LGQ LL G L ++L  YP + +
Sbjct: 72  RCYERARELLADWHAFEADLRGVGDEPEGTLRVVAPHALGQLLLVGPLADYLRAYPRVSV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L+++  D   +  DCAI++ + +  +  +  KL  +     AAP  L     P    
Sbjct: 132 EWLLNDRRPDFIAEGVDCAIQVGE-VTDTLAVALKLSEVPRVVVAAPSVLAGRAPPAHPS 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +   +          E              P    +  +S  ++     +G G  + 
Sbjct: 191 ELAELPWLALRTFYRN--EVLLTHRPSGEVARVPIRPRMSTDSLYALQSAARMGLGACMA 248

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             ++V ++     LV+++         VY  YP +     +L+ F   + L   D
Sbjct: 249 SAWLVNEDIAAGRLVQLVPQWHVAPLPVYLIYPPSRFQPARLRRFIETMRLALAD 303


>gi|77457981|ref|YP_347486.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381984|gb|ABA73497.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 328

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 117/293 (39%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +  +  F   A  GSF  AA +L L+ +++ + ++ LE  +G++LF R  R LTLTE G
Sbjct: 18  TFSSIECFVRSAEVGSFAEAARRLSLTPAAVGKSVAKLEARLGVRLFQRSTRRLTLTEAG 77

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  S     ++     L  +  +P+G L+++     G+  +   L EFL  +P I 
Sbjct: 78  QLFLSEVSGSLTTIQNAVNNLASAGGQPAGTLKVSMGTVFGRLYIVPLLGEFLKRFPAIN 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                DN+ +D+     D AI     +    ++ R+L   H    A+  YL         
Sbjct: 138 PDWHFDNRQVDLIGQGFDAAIGGGFELP-QGVVARRLTPAHRVLVASADYLDRYAPISEP 196

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ I         +  +       +       + + ++   +       G GIAL
Sbjct: 197 DDLKLHDGILIRSPQTGRVRSWQLTHRTRQHSPLTLKARMTMSDSEAACATAAQGLGIAL 256

Query: 244 LP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +   + V   +   L R++ D       +   Y E     GK +AF +F+  +
Sbjct: 257 VSMPFAVGYLEVGTLQRVLPDWYVDDGNISIYYAEHKLLPGKTRAFVDFVIEQ 309


>gi|107101994|ref|ZP_01365912.1| hypothetical protein PaerPA_01003041 [Pseudomonas aeruginosa PACS2]
          Length = 301

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 123/272 (45%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    +    +   LE     L
Sbjct: 24  RQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYRQRLERILDDLEAADAAL 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
                 PSG LR++  + L    L   +  FL  YP+++++L+L +   D+  +  D A+
Sbjct: 84  TSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPELRLELLLQDGRQDLIAEGIDLAL 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R    +  S L+ R L+ +     AAP YL    +PL  + L +H  I F          
Sbjct: 144 RGSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALREHECIRFS----LSGHA 199

Query: 205 FNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIME 260
             W    DR  I  P     +V+S L++    + G G++L+P   V+       LV ++ 
Sbjct: 200 DRWTFRKDRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPRLYVQAELAEGRLVELLA 259

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D       ++  YP   +  GK + F +F+  
Sbjct: 260 DWKADETAIHAVYPS-RQLAGKTRVFLDFLTE 290


>gi|71278912|ref|YP_268511.1| LysR family substrate binding transcriptional regulator [Colwellia
           psychrerythraea 34H]
 gi|71144652|gb|AAZ25125.1| substrate-binding transcriptional regulator, LysR family [Colwellia
           psychrerythraea 34H]
          Length = 306

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 134/300 (44%), Gaps = 15/300 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V ++     A  ++ LS + ++ +I+GLE   G++L  R  R ++LT+
Sbjct: 1   MDKLGDIELFVRVIKNEGLAAAGREVGLSPARMTARINGLEERYGVRLLNRTTRRISLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G K +     +  ++E  +  LQ      +G LRI    DLGQ  +   L  F+  +P 
Sbjct: 61  EGRKFYVSCERILAEVEQAETSLQTGQTSFTGALRITAPSDLGQQHIAPVLSRFVEEHPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I   L L +  +D+  +  D  IR    ++ S+LI R+L +      A+P YLK    P+
Sbjct: 121 ITPYLFLSDSVVDLVGNGFDLGIRFGS-LKDSTLIARRLASNRRVLCASPDYLKRKGIPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL +H+ +T   +  + +  +++  T        +      N    I ++ + G+GI
Sbjct: 180 LPEELIQHDCLTMVRMA-EPLTTWHFQGTAGNSSISIQ-GTRASNDGALIRRWAIEGAGI 237

Query: 242 ALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           AL   + + ++     LV +M++          T    ++  YP     + +  AF   +
Sbjct: 238 ALKSYWDIAEDLKAKRLVTVMDNYQYDFNRTGTTGGADLHVIYPNRKFISLRTTAFIEAL 297


>gi|89075442|ref|ZP_01161859.1| putative transcriptional regulator, LysR family protein
           [Photobacterium sp. SKA34]
 gi|89048858|gb|EAR54428.1| putative transcriptional regulator, LysR family protein
           [Photobacterium sp. SKA34]
          Length = 306

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 127/294 (43%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  +     ++ E      G L I+         L   L +F   +PDI +
Sbjct: 68  GYFLDIKDIFSAISDATDKVLERGA--KGALTISLPPSFAIQWLVPRLTDFNEQHPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +    S L   KL    M    +P  L   +   ++ 
Sbjct: 126 RIKAVDLDEGSLTDDVDVAIYYGRG-NWSGLRADKLYQEFMMPVCSPMLLTGTKPLRTLD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          E  N++   D          +  +    ++Q    G GIAL 
Sbjct: 185 DLKLHTLLH----DTSRKEWKNYVRHYDLQGVNVNQGPI-FSHSTMVLQAAAHGQGIALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   +   LV   ++V+      YF   E   +TG+++ FR+++  KAR
Sbjct: 240 NNVLAQPELEAGRLVCPFDEVLVSKNAFYFVCQERQADTGRIQIFRDWVLAKAR 293


>gi|209543915|ref|YP_002276144.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531592|gb|ACI51529.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 298

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 130/287 (45%), Gaps = 6/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D++R+   + R GS + AA  L L+ S +S +++ LE  +G +L  R  R  TLTE G
Sbjct: 3   DADEMRIVVEIVRQGSLSAAARHLGLAPSVVSDRLARLEQRLGTRLLVRTTRRQTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    +  +  ++E+   P G LRI   +  G+  L   +  F+  +PDI+
Sbjct: 63  RIYLDEATAILAATDAMETRVRETVNAPGGMLRITAPMPFGRVRLAPFVAGFISRHPDIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L+++ +DI  +  D AIR   P+  ++L  R+L+       A+P YL     P + 
Sbjct: 123 IHLTLEDRMVDIVGEGYDIAIR-AAPVVDTALTGRRLMESRRVLVASPAYLSRHGRPETP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +   ++  +C   +      ++         L  +     + + + G G+A 
Sbjct: 182 ADLARHACLV-ANMTGQCRGTWR-FGRGEKARIHRVEGRLASSHSELPVVWALAGLGLAQ 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
              + V+ +     LV +MED      T Y  +  +  ++ K+  F 
Sbjct: 240 KSLWEVEAHLRAGQLVTVMEDWEPDPATFYAIHTVSTVHSHKIALFM 286


>gi|117619472|ref|YP_856183.1| putative HTH-type transcriptional regulator YafC [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560879|gb|ABK37827.1| putative HTH-type transcriptional regulator YafC [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 300

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 131/299 (43%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L +F  V  +GSF  AAE L +  S +SR I  LE ++   L  R  R ++LT
Sbjct: 1   MKTHSDELTLFVAVVEAGSFRQAAENLGMDNSVVSRGIKRLEEKLSTVLLNRTTRRVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+GS  ++   ++  ++   +  L     +P G LR+        + L   + EF   YP
Sbjct: 61  EEGSWFYQRAVKILTEMSEAEGLLLMRREQPEGVLRVDAATPFILHRLVPIIGEFRRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++QL      I++     D AIR+ + +  SSL    L    +   A+P YL+    P
Sbjct: 121 AIELQLHSSEGFINLMERRVDMAIRIGE-LTDSSLRALPLGRSRLRLLASPDYLRERGTP 179

Query: 181 LSIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               + L  H L+ F  L P  +  +  L+  ++    P    L+ +S  ++ Q  + G 
Sbjct: 180 RQPIDLLSGHELLGF--LHPDHLNHWPLLSQ-EQGDRFPITPTLRASSGETLRQLALRGQ 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  L D++   +     LV ++       S  +   +    +   +L+ + +F+  + 
Sbjct: 237 GIVCLSDFMTGQDRMSGALVEVLARSNSGASRPINAVFYSDAQRDIRLRVWLDFLKEQL 295


>gi|167561360|ref|ZP_02354276.1| glycine cleavage system transcriptional activator [Burkholderia
           oklahomensis EO147]
          Length = 312

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 132/296 (44%), Gaps = 12/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + LTLT+ G 
Sbjct: 2   LNALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLTLTDAGG 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        +     +++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 62  RYAQQVRAALTLIADATRDIRASDRDK--RLIVSTLPSFAARWITPRIGPFIERHPEIDL 119

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 120 ELRASDALVDFARDDVDVAIRFGYGV-YPGLYVEPLLDETFFPVCAPT-LNGGVLPETPA 177

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 178 DLARYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 232

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              +         +VR+ +      +  +F  P +L  T +++AFR ++  +   +
Sbjct: 233 RRSLAVPELSAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLLEEIARF 288


>gi|77457466|ref|YP_346971.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381469|gb|ABA72982.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 323

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 136/295 (46%), Gaps = 10/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS + D L  F V+  +GSFT AA+QL  S+  +S++IS LE    + L  R  R L+LT
Sbjct: 22  MS-EMDDLAAFAVLIEAGSFTLAAQQLGCSKGQLSKRISQLEARFSVVLLQRTTRRLSLT 80

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+ L      +  ++E  +  L       +G +R+   + LG+    G L +F   YP
Sbjct: 81  AAGAALLPQAQALVVQVERARQALARLKDDMAGPVRMTVPVSLGETFFDGLLLDFSQKYP 140

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++QI+L L+N   D+S D  D AIR  +      L+ + L+       A+P YL+   EP
Sbjct: 141 EVQIELELNNSYRDLSRDSFDLAIR-TEVANDERLVAKPLLAWQEMTCASPEYLERFGEP 199

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           L+ Q L +H  +       +      WL      +   R+S     N Y  + +  + G+
Sbjct: 200 LTPQALAEHRCLLNSHYSGR----EEWLYHQQHELLRVRVSGPFASNHYNLLKKAALAGA 255

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GIA LP Y+++    +  L  ++ D  T    +Y  +P       + +   +++ 
Sbjct: 256 GIARLPSYLLQAELADGRLRWLLRDFQTRRMPMYLVHPYQGGLPKRTQVLADYLI 310


>gi|315500606|ref|YP_004089408.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
 gi|315418618|gb|ADU15257.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 297

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 132/299 (44%), Gaps = 10/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+  L +F  VAR+G F   A++  L  S++SR I+GLE E+ ++LF R  R L+LTE 
Sbjct: 1   MDFQALDLFVAVARAGGFAAVAKERFLDPSTVSRIIAGLEAELNVRLFQRTTRSLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+        +  ++     E    + +P+G LR+  ++  G   +   L +F  +YP +
Sbjct: 61  GALYLARMEPLLDEMRRAAAEASNVNAEPTGVLRLTASVAFGVQQIAPLLGDFCAVYPRL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++  +  + ++D+  +  D AIRL   I+   L+  +L +   H  A+P Y+        
Sbjct: 121 KLDCVFTDANLDLVQERMDLAIRLAPAIE-GDLVATRLFSTRYHVVASPDYIARAAPIGE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H  +  G    +    F         +       + +++ L++    + G G A
Sbjct: 180 PRDLLTHRCLLLGLRAFRSTWKFKNAQGALEEVSVD--GDVVISTPLALRAAVLAGGGPA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFLKA 294
           LL  +++ D+     LV +  D      T     +  YP       K++   +F+  + 
Sbjct: 238 LLSGFLIADDLRAGRLVDLFPDHRPTPTTFDTGAWAIYPSRAYLPNKVRVMIDFLRSRL 296


>gi|200388744|ref|ZP_03215356.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199605842|gb|EDZ04387.1| glycine cleavage system transcriptional activator [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 305

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G GI
Sbjct: 185 DLAKHTLLH--DASRRDWQAYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMSQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|170727021|ref|YP_001761047.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812368|gb|ACA86952.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 323

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 127/289 (43%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF+ +  +GSFT AA+QL+ S S +S+Q+  LE E+ ++L  R  R LT T+ G + 
Sbjct: 18  QMIVFHTLVMTGSFTLAAKQLNTSTSYVSKQLGALEAELNLQLVQRTTRTLTFTDAGKRF 77

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +++  +      + ++    SG +++      G   +   L+     YP++  +L
Sbjct: 78  ALYCEQMFDLMHDAGANMLDARDDISGTVKLGLPQSFGTLHIIPALELLQQEYPELIFEL 137

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+  +  D  I  ++ I     + ++L        A+P YL +   P   Q+L
Sbjct: 138 TLFDHATDMVKESLDIWITNQEKIHD-GYVAQRLAHTGFVLVASPEYLLSHGVPEHPQDL 196

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN + +     K     NW  T    + + +++   +++   ++    + G GI  L 
Sbjct: 197 VEHNCVIYHS---KSRSYDNWTFTQGDEVVDVQVNGNFRIDLSEAVRDRVISGHGIGHLA 253

Query: 246 DYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
            Y++ D      L+ ++    T     VY  YP+      K +    F+
Sbjct: 254 TYLLTDEFQQGKLIPLLPKWQTEQKLPVYAVYPKRKHLPAKFRVIIEFL 302


>gi|323497561|ref|ZP_08102578.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           sinaloensis DSM 21326]
 gi|323317310|gb|EGA70304.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           sinaloensis DSM 21326]
          Length = 294

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 131/297 (44%), Gaps = 14/297 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA  G+F  AAE   +S + + + I  LE ++G  L +R  R  TLTE
Sbjct: 1   MDKITSMKVFCFVAEHGNFRQAAEYFAMSPTMVGKHIKHLEIQLGTSLIHRTTRKQTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +   +   +  + +   KP G++++   +  G  +L   L +FL+ YP+
Sbjct: 61  AGNIYLHECQRILQDISDMESAIHDIGNKPQGRIKLNAPVTFGSKVLAPLLAQFLMDYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L LDN  ID     AD   R+ + +  SSL+ R +   HM   A+P YL N     
Sbjct: 121 IHIDLDLDNTLIDPYEIEADFIFRVGE-LNDSSLVARFIGHYHMTYCASPSYLTNRPWSG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +  L +H+ + F     +  E    L + DR     +   L  N+   + Q  + G+GI
Sbjct: 180 DLSSLGQHDCLGF-----RYRETSEALTSKDRHRDNIK---LMANNGEVLRQAALAGAGI 231

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L P  +V ++     L+ I       +  ++  Y      + K + F + +  + R
Sbjct: 232 ILQPKILVDEDIRSGRLIEITTQTHQAAKPIHLVY-RDKHQSLKNRTFIDAMLCQLR 287


>gi|239504242|ref|ZP_04663552.1| transcriptional regulator [Acinetobacter baumannii AB900]
          Length = 310

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 130/295 (44%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T + H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQNYHLAASPQYVAKYGTLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL++H  + +     +    +    + +  +  P    L  N+  S+M   + G GI
Sbjct: 185 HPTELNQHKCLVYKGF--EGPNRWLVRKSNEEWVHYPITPLLSSNNAESLMTAALHGMGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD+++ +     +L++++ +      +    +   YP        ++A  ++
Sbjct: 243 VLFPDWLIGEALKQGDLIKLLPEYEVAIKSHPQHIAAIYPNVRHPPLNIRAVIDY 297


>gi|209885928|ref|YP_002289785.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
 gi|209874124|gb|ACI93920.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
          Length = 304

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 136/297 (45%), Gaps = 5/297 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  V   G+ T AA +L+ S  +++R I+ LE +VG +L +R  R + ++E
Sbjct: 1   MDRLDAIRVFIAVLDEGNLTKAALRLNRSPVAVTRAIAFLEADVGTELLHRTTRSVRVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +   V   + + LE   +        P G L I   +  G  +L+  + +FL  YP 
Sbjct: 61  AGERYAVVCRRILNDLEEANLAAAGLHSSPRGVLTITAPVLFGTRILRSVIDDFLEKYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+ +L ++ ++++ +  D A+R+   +  S LI  K+ ++     A+P YLK      
Sbjct: 121 LRIRYLLVDRQVNLAEEGIDVALRIGH-LPDSGLIATKIGSVRRVIAASPSYLKGRPAIR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  HN I+  +L    +  F                 L VN+  S+++    G G+
Sbjct: 180 TPSDLAAHNCISNFELGHGEVWTFPPKPGTKAHRNVRLKPRLSVNTIESLVRSAADGRGV 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y +++      L  +++        V+   P+      K++AF +++  + R
Sbjct: 240 VRVLSYQIEEEVRKGKLQILLKSAEPDPLPVHLVVPDGRAELSKVRAFIDYVAPRLR 296


>gi|152999185|ref|YP_001364866.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151363803|gb|ABS06803.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 329

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 138/295 (46%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  
Sbjct: 1   MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  ++ +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P +
Sbjct: 61  GSHFYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I  ++ +D+     D A  +   + +  L+ R + T  +  YA+P YL     P +
Sbjct: 121 TLEVISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAVHGTPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +E++ HN+  F     K    FN L          R      NS    +++ + G GI 
Sbjct: 181 PKEIEAHNVSMFRLSNGKI---FNELFIGSEQEVRVR-GNFCSNSIEVAVEFGLQGRGIV 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P  +V +   +  LV ++ ++       +  YP     +   + F ++I  + 
Sbjct: 237 YAPAEVVDEYVQSGELVTLLPEIQPHQGECFLAYPSRRYVSLACRRFIDYIMQEL 291


>gi|119386211|ref|YP_917266.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119376806|gb|ABL71570.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 298

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 128/292 (43%), Gaps = 9/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +   L+ F + A   +F   A +L ++ +S++R I+ LE  +G++LF R  R ++LT
Sbjct: 1   MN-ELKALKTFLLAAEKRNFAQVARELDMTPASVTRTIAALEDMLGVQLFVRTTRQVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+       +    LE  + E+  +     G+LRI   + LGQ +L   L  F  LYP
Sbjct: 60  GDGAIFASRIEQAVEALEAARTEMANAHKADEGRLRINAPMSLGQRVLPQILCGFRDLYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +++ L ++ +D+  +  D AIR+         I RK+  +     AAP       E 
Sbjct: 120 RIDVEIRLTDRFLDMVEEDFDLAIRISAAPSDKFTIWRKICPVKRLLVAAPGTP--HAEV 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL   + + +     +       L+  +  +       +  N+   +      G+G
Sbjct: 178 KHPNELSPGDCLAYSADSHRENWQ---LSDGNASVTIAAGRSISANNGDLLAHMAADGAG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + LLP +I+     +  LV+I+ D   P   +   YP   K   ++ AF +F
Sbjct: 235 VVLLPVFILAQYLRSGRLVQILPDWTPPQIWLTLYYPPYQKLPPRIAAFSDF 286


>gi|254245613|ref|ZP_04938934.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124870389|gb|EAY62105.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 431

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 8/267 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  L  F  +  +GS + AA +L LS S +S++++ LE+ +G++L +R  R  TLT+ G
Sbjct: 46  DFPALDTFARIVSAGSLSAAARELDLSLSVVSKRLAHLESRLGVRLLHRTTRQQTLTDDG 105

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ H     +  ++E  +  +++     SG LR+    +LG+  +   +  F   +P + 
Sbjct: 106 AQFHAQVLRILAEVEHAETLMRDRRGTVSGVLRVTAPGELGRLRIAPLVAAFQQRHPQLT 165

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+L +  +D+     D A+R+   +  S++I R+L   H    A+P YL     P   
Sbjct: 166 VQLMLTDAVVDLLAADIDVAVRIGN-LADSTMIARELAPNHRVLCASPGYLAAHGWPAHP 224

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I  GD                  +     + L  N   +     + G+GIAL
Sbjct: 225 AELRAHRCIVMGDQPHAEWR----FDGAQGGVAVEVTAALLTNDGGAARTLALEGAGIAL 280

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSF 267
              + V    D   LVR++     P  
Sbjct: 281 KSIWDVGADLDAGRLVRVLPASRHPPR 307


>gi|187478146|ref|YP_786170.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115422732|emb|CAJ49260.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 303

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 126/289 (43%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  VA++ +F+ AA+ L + +S++SRQ+S LE  VG++L  R  R + LT  G    
Sbjct: 1   MELFVEVAKTRNFSRAADNLGIPKSTLSRQVSELERAVGLQLLSRTTRKVELTAAGQLYF 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +    ELQ+    PSG LR+    D G   +  +  EF   YP++   L 
Sbjct: 61  DRCQRIVTEAQAAHEELQKLLETPSGPLRVNLPADFGTEFMAESFVEFSRRYPEVDFYLD 120

Query: 128 L-DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L   +  +      D A+++ + +  S+ I R L  +    YA+P YL     PL   +L
Sbjct: 121 LASPEHAERVFRSCDVALQIGE-LPDSTQIARLLGMLPAGLYASPDYLDRHGRPLHPDDL 179

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
            KH  + F   +        W  T  +   E        VNS   +     LG+GIA+L 
Sbjct: 180 AKHECLEF--RVGHAGRVTRWPLTNGQQQFEITPGRRYSVNSVSMLRSLARLGAGIAILA 237

Query: 246 DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               +D  +L +++ D     F VY    +      K + F  F+  + 
Sbjct: 238 ARHCEDGESLEKVLPDWHAGPFPVYAVT-DTRLLPAKTRIFIEFLMERL 285


>gi|107101169|ref|ZP_01365087.1| hypothetical protein PaerPA_01002201 [Pseudomonas aeruginosa PACS2]
 gi|254234835|ref|ZP_04928158.1| hypothetical protein PACG_00707 [Pseudomonas aeruginosa C3719]
 gi|126166766|gb|EAZ52277.1| hypothetical protein PACG_00707 [Pseudomonas aeruginosa C3719]
          Length = 304

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 112/291 (38%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +AR  SF  AA  L ++  ++S  +  LET++GI+L  R  R ++ TE G
Sbjct: 5   DLAGLAAFVAIARERSFRRAAATLGVTPPTLSHTLRELETQLGIRLLNRTTRNVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       +  +      L      P G +RI    +    +L     E    YP I 
Sbjct: 65  EHLLAHLDPAFEDIAAALDSLNRFRETPHGLVRINAPRNAIGLVLAPRFGELARDYPGIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ D    +I     D  IRL + +Q      R    + +   A P Y +    P S 
Sbjct: 125 LEVVADEGFANIVEAGFDAGIRLGEDLQHGMRAVRVGPDLRLAIVATPAYFRRQGRPGSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +EL  H  I +  +     E + W  +         +S  L ++    ++Q  +   GIA
Sbjct: 185 EELLGHRCIGWRKV--SSGELYKWQFSKGTKALSVAVSGPLVLDDPRLMLQAALADVGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  V ++     L R++ D   P    +  YP    +   L    + +
Sbjct: 243 FAIEEEVAEHLAAGRLERVLADWCAPFPGFHLYYPNRRNHPAALSTVIDLL 293


>gi|218892309|ref|YP_002441176.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218772535|emb|CAW28318.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 304

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 113/291 (38%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +AR  SF  AA  L ++  ++S  +  LET++GI+L  R  R ++ TE G
Sbjct: 5   DLAGLAAFVAIARERSFRRAAATLGVTPPTLSHTLRELETQLGIRLLNRTTRNVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       +  +      L      P G +RI    +    +L     E    YP I 
Sbjct: 65  EHLLVHLDPAFEDIAAALDSLNRFRETPHGLVRINAPRNAIGLVLAPRFGELARDYPGIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ D    +I     D  IRL + +Q      R    + +   A P Y +    P S 
Sbjct: 125 LEVVADEGFANIVEAGFDAGIRLGEDLQHGMRAVRVGPDLRLAIVATPAYFRRQGRPGSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           +EL  H  I +  +     E + W  +         +S  L ++    ++Q  +   GIA
Sbjct: 185 EELLGHRCIGWRKV--SSGELYKWQFSKGAKTLSVAVSGPLVLDDPRLMLQAALADVGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  V ++     L R++ D   P    +  YP    +   L A  + +
Sbjct: 243 FAIEEEVAEHLAAGRLERVLADWCAPFPGFHLYYPNRRNHPAALSAVIDLL 293


>gi|254228071|ref|ZP_04921501.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262395951|ref|YP_003287804.1| transcriptional regulator LysR family [Vibrio sp. Ex25]
 gi|151939567|gb|EDN58395.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262339545|gb|ACY53339.1| transcriptional regulator LysR family [Vibrio sp. Ex25]
          Length = 293

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L++F  V + GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT +
Sbjct: 1   MKIDDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNK 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L++   +    S++  GK+++    +  +  LQ  L EF   YP +
Sbjct: 61  GDAYYQDLQKVLTLLDSANQQASNESIEVRGKIKLGLLPETYEP-LQPILFEFQDQYPQV 119

Query: 123 QIQLI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +  ++N  ID+     D A+     +  S ++ RK++T+     A+P+YL+    P 
Sbjct: 120 ELDIRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPA 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++EL  H  I F    P    D  W         +P+   L  N+   I    VL  GI
Sbjct: 179 TLEELSDHQCICF--RWPNGNVDNLWHFQEQNVALKPK---LISNNIGFIKSSTVLDRGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +P  +VK   ++  LV+++        T +  YP+        +     +
Sbjct: 234 SYIPKLLVKNELESGALVQVLSQYAVTEETGWLLYPKPKTLNQASRLLIEHL 285


>gi|221197255|ref|ZP_03570302.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203927|ref|ZP_03576945.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176093|gb|EEE08522.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183809|gb|EEE16209.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 317

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 125/294 (42%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L VF  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLAVFVAVVEAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    ET    +   +    G LR++  +D G  ++   +      +P 
Sbjct: 66  AGRAFYDACRDIVQAAETALDAVSSDAGPLRGTLRVSVPVDYGAQVVAPAVVALRDAHPS 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++LI +++ +D+  +  D A+R+ + +  S+    +L T      A+P ++     P 
Sbjct: 126 LDVELIANDRVVDLVAENLDVAVRIGR-LADSNYRAVQLGTYEKWLVASPAFVARYGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +    L           +           + +  N+  +     + G G 
Sbjct: 185 DPAALAALPFVMLSTLARPHT--LELESARGGKASVRCSASVVSNTATACRAIALAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LL D+ + D+    +LVR++         ++  YP     + K++AF + +  
Sbjct: 243 GLLTDFSIADDVAAGSLVRLLPAWRAAPAGIHAVYPSTRLPSPKVRAFIDAMKA 296


>gi|323971586|gb|EGB66817.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
          Length = 312

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAKHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|293416055|ref|ZP_06658695.1| glycine cleavage system transcriptional activator GcvA [Escherichia
           coli B185]
 gi|291432244|gb|EFF05226.1| glycine cleavage system transcriptional activator GcvA [Escherichia
           coli B185]
          Length = 305

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAKHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    +     GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDNQAELGKIAAFRQWILAKA 292


>gi|270264879|ref|ZP_06193143.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041177|gb|EFA14277.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 314

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 134/295 (45%), Gaps = 10/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+A  GSFT AAE+L +S++++S++I  +E   G+ L  R  R + LT+ G 
Sbjct: 10  WTHLHWLTVLAEQGSFTRAAERLDVSKAAMSQKIKEIEMLAGVPLVQRTTRSVRLTDAGL 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L     + + +++ +   + +SS    G +R+   +   +  L   +  FL   P++++
Sbjct: 70  RLVEELRQPFAQIKQSFSGICDSSGPLRGSIRVTAPVAFARQQLVPRITGFLRANPEVRV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ + ++ +  D AIR    +  +  +  +L      A A+  Y+K    P S  
Sbjct: 130 QLEVSDRLVSLTTEGFDLAIRHSDSLPDTH-VAWRLCPTETLAVASADYIKRHGMPSSPA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLGSGI 241
           EL +H  + +     +    F    + +  + + R+        N+  SI      G GI
Sbjct: 189 ELQRHQCLYYPRGSEQPGWSFVARHSTEGKVDQVRVPVSGPFATNNSESIRDAAAEGLGI 248

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFI 290
           ALLPD+  +    +  L+ ++           +++   P A + +  +  F +++
Sbjct: 249 ALLPDFSAQQALADGRLIEVLSAWRPIGAFADSLHVVRPYAPQVSRAVTEFSSYL 303


>gi|15597157|ref|NP_250651.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9947959|gb|AAG05349.1|AE004622_11 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 311

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 132/299 (44%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  +  + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGRETGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E     + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMADQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+L        AAP  +   R 
Sbjct: 121 QVQLEILLTNRRVDLLNEGVDVALRVRELGDEDPALVCRRLAPATTQILAAPSLIAGRRL 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               ++L+    +  G +          +          R   L V+ ++   +  V G 
Sbjct: 181 -EHPEDLEDLPFL--GAIHNDRKVHATLIGPDGSRYQLEREPRLGVDDFVLRKKAAVAGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ LLP+        + +LVRI+     P  T+   Y         ++A  +F+    +
Sbjct: 238 GVTLLPEGYCDRELADGSLVRILPQWTLPKSTMQAAYLPRSSQIPAIRALIDFLVEALQ 296


>gi|330808821|ref|YP_004353283.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376929|gb|AEA68279.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 123/293 (41%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++     F  VAR  SF+ A  ++ +S S++S  I GLE  +G++L  R  R +TLT  G
Sbjct: 7   NFGDFIYFLAVARHSSFSRAGVEVGISASALSHAIKGLEARLGVRLLNRTTRSVTLTAAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L  + SE   K++     L +   +P+G++R+    D    LL   L  F   YPDI+
Sbjct: 67  EELLALISEPVDKIDQAIELLNKFRDEPTGRIRLNVFSDAALLLLAPVLSTFAHRYPDIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   N  +DI     D  IR    +    + Q     +       P YL  C  PL  
Sbjct: 127 VEVSTTNSMVDIVEGGFDAGIRYGATVPEGMIAQSLSPPVRWVVVGTPDYLDRCGMPLHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L +H+ + F     +    +NW    +    E P    + ++    ++     G+G+ 
Sbjct: 187 EDLKQHSCLRFRLGNGRM---YNWEFEKEGEKLEIPVSGNVVLDETRMMLAMVTQGAGLT 243

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + IV        L  ++ED ++     +  Y    +    L+   + I  
Sbjct: 244 YCAEPIVAPLIAEGTLQVVLEDWVSVGPGFHIYYSSYRQVPITLRLLIDLIRE 296


>gi|150396186|ref|YP_001326653.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027701|gb|ABR59818.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 314

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 134/293 (45%), Gaps = 8/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V ++  F+ AA  L++ +S +S+ ++ LE ++G++L  R  R L +TE G
Sbjct: 3   DLNDIALFAAVVKNNGFSAAARDLNVPKSKLSKHVARLEEQLGVRLLERSTRKLRMTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   +   + E+     +P+G +R+A  I     +L   L  F   YP ++
Sbjct: 63  RIFYEHAQGLLDGVAAAEAEIAAVRAEPTGVVRLACPIGFTP-MLADILPAFHRRYPGVR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSS-LIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ ID+  +  D A+R R  + + + LI RK   +     A+P  L    E ++
Sbjct: 122 LLITATNRRIDLIEERIDVALRARDQLDTDNQLIVRKFGEVRQRLAASPTLLARLGE-IT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +   ++  +  P  +  +  +      I       +  + +L + +  + G GIA
Sbjct: 181 TDKLSQMPTLSMNEQNPNDI--WRLVHATGGTIEIAHRPVIGCSDFLILERAAIEGMGIA 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLPD+I +    +  LV ++ +  + +  V+  +P         +A  +++  
Sbjct: 239 LLPDHICERAFRSGALVPVLPEWTSGNVMVHLVFPSRHGLLPATRALIDYLAE 291


>gi|37525286|ref|NP_928630.1| hypothetical protein plu1320 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784713|emb|CAE13613.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 297

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 138/294 (46%), Gaps = 10/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +     +F  VA + SF  AA QL LS SS+S+ IS LE ++G++L  R  R ++LT
Sbjct: 1   MN-NLSGFMIFIHVAEARSFATAARQLGLSPSSVSKSISRLEDKLGVRLLQRSTRSVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G+        +  ++ T + EL  S   P G+LR++    L  NL+   L  F+  YP
Sbjct: 60  AEGTLFLERCKRILDEISTAEHELLSSISAPQGRLRVSLP--LLSNLMLPVLSAFVTCYP 117

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ +D+  +  D  +R  + +  S L+ +++ +       AP Y     +P
Sbjct: 118 QIELELDFSDRLVDVIDEGFDAVVRTGE-LNDSRLMNKRIGSSRFIYVGAPSYFAQHGKP 176

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              +EL  H  +         +E   W   + R   +  +   +  N   +++   + G 
Sbjct: 177 SHPRELLHHACLMHRFPTTGLLE--KWPLCLGRSEIDIHLQAKITSNHVETLLHMAIQGH 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA LPD+ VK    +  L+ I++     S T    +P       K++AF +F+
Sbjct: 235 GIACLPDFTVKQALASGTLLTILDKWAGTSSTFRVLWPSNRWVLPKVRAFVDFM 288


>gi|307726179|ref|YP_003909392.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586704|gb|ADN60101.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 304

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 126/277 (45%), Gaps = 9/277 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E+  G+ L  R  R + LT +G    +    +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMESRAGVALVNRTTRRMMLTPEGELYLQHARRILDEIDELAELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +   P G LR+  T+  G++ +   +  F+  YP + +QL L      ++ D  D  I
Sbjct: 87  GSAKKSPKGLLRVNATLGFGRSHVGPAISRFVAKYPQVSVQLQLSVTPPPLTDDTFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ R+L        AAP Y+ +   P++  +L +HN I    GD      
Sbjct: 147 RFGEP-PDTRVVARRLAGNRRLLCAAPSYIASHGMPMTPHDLTRHNCIGIRQGDEAYGVW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
              +      +         L  N     +++ + G GI L  ++ +K    + +LV ++
Sbjct: 206 RLTSGKGASQKTEAVRIKGTLTTNDGEIAVKWALEGHGILLRAEWDIKQYLADGSLVVVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               TP+  ++  Y +  + + +++AF +F+   ARD
Sbjct: 266 PGYDTPNADIFAVYSQRHQMSNRIRAFVDFV---ARD 299


>gi|283786511|ref|YP_003366376.1| glycine cleavage system transcriptional activator [Citrobacter
           rodentium ICC168]
 gi|282949965|emb|CBG89593.1| glycine cleavage system transcriptional activator [Citrobacter
           rodentium ICC168]
          Length = 305

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIQWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   S +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDKPLKSPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G GI
Sbjct: 185 DLAKHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|315182113|gb|ADT89026.1| LysR family transcriptional regulator [Vibrio furnissii NCTC 11218]
          Length = 264

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 112/260 (43%), Gaps = 8/260 (3%)

Query: 38  ISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRI 97
           ++ LE E+G++L YR  R LTLTE G  L      V    +     +       SG +R+
Sbjct: 1   MARLEEELGVQLLYRTTRKLTLTEAGKALLASAKNVKQATQEAMDAVAGFGENVSGHIRM 60

Query: 98  ATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQ 157
           +     G  +L   + EF  L+P + +++ LDN+ +D+     D  IR    ++ SSLI 
Sbjct: 61  SVPSISGDLILADAVAEFCNLHPGLTVEMSLDNRFVDLVEGGFDLVIRTGY-LEDSSLIA 119

Query: 158 RKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE 217
           R ++       A+P Y+    +P+  ++L  HN + +           +W     +    
Sbjct: 120 RHILDSQWVVCASPSYIARNGKPIKPEDLVNHNCLQYAYQTTGAT---DWEFKSAKGNYI 176

Query: 218 PRIS-CLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCY 273
            R+S     ++  ++ +  + G GIA +P  +V  +     LV I  + +     +Y  Y
Sbjct: 177 VRVSGTFTTDNATALRKAALGGHGIAYVPRCLVYHDFRNGELVDIFPEQVGKKLGIYAVY 236

Query: 274 PEALKNTGKLKAFRNFIFLK 293
           P   +   K++     I  +
Sbjct: 237 PFTRQPPNKVRLLIEHIRAR 256


>gi|167617734|ref|ZP_02386365.1| glycine cleavage system transcriptional activator [Burkholderia
           thailandensis Bt4]
          Length = 313

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 131/297 (44%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA +L ++  ++S Q+  LE E+G+ LF RH + L LT+ G 
Sbjct: 2   LNALRVFEAAARHESFSRAANELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGG 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L     E++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 62  RYAQQVRAALALLADATREIRASDRDK--RLAVSTLPSFAARWITPRIGPFIEQHPEIDL 119

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 120 ELRASDTLVDFARDDVDVAIRFGYGV-YPGLYVEPLLDETFFPVCAPT-LNGGVLPETPA 177

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 178 DLVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 232

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         +VR+ +      +  +F  P +L  T +++AFR ++  +   +K
Sbjct: 233 RRSLAMPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLLDEIARFK 289


>gi|123443908|ref|YP_001007879.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090869|emb|CAL13751.1| putative LysR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 297

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLISFLMVARERSFTKAAAKLGVSQSALSHSIRGLEERLELRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++E+    L E   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  ERLANSLEPRLAEIESELDALSEMRARPAGNIRITAGEHAVDSVLWPVLKSFLAEYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  IRL + +    +  R    + M   A+P YL     P + 
Sbjct: 125 VEITVDNTLTDIVTGRFDAGIRLGEQVAKDMVAVRIGPDMSMAVVASPSYLAKYGIPTTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I     +P     + W    +    + R+   L  NS    +   V+G G+A
Sbjct: 185 ADLQHHRCINM--RLPTMGGLYAWEFEKEGREVKVRVDGQLTFNSIRQRIDAAVIGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++P+  VK    + NL+R++ED   P    Y  YP   ++T       + +
Sbjct: 243 MVPEDAVKAEIASGNLIRVLEDWCEPFPGYYLYYPSRRQHTTAFSLLVDAL 293


>gi|152979747|ref|YP_001345376.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150841470|gb|ABR75441.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 291

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 126/286 (44%), Gaps = 9/286 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LR F +V    SFT A E+L +S S++S  +S LE  + I+L  R  R ++ T +G
Sbjct: 3   NLNDLRTFVLVVEHKSFTKAGEKLGISASAVSHCVSNLENRLNIRLLNRTTRSVSPTPEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    S     ++ +  +L+E+   P G +RI  +    +  +   L   L  +P IQ
Sbjct: 63  LSLLNDISPYLQAIDLSVQKLEENQDTPMGTVRINASQVAIEMAVLPKLAPILSRFPHIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L  +N+ +DI  +  D  +R+   +    +  +    +     A+P YL +   P  I
Sbjct: 123 IELHSENRFVDIVGEGFDMGVRIGDDVAKDMVAVKVSPPLTTAIVASPRYLADKPIPRHI 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++LD H LI       +    ++      +P+       L +NS    +       GI  
Sbjct: 183 KDLDNHRLIALRLAADRRPIAWD-FRIKGKPVSYTPKGQLLLNSNP--LPAIKHHLGIGF 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +P ++V+    +  LV ++ +       +Y  YP    ++   KAF
Sbjct: 240 MPYFMVEKELKSGELVEVLGEYRMTYEPLYAYYPSRKHHS---KAF 282


>gi|71901256|ref|ZP_00683356.1| regulatory protein, LysR:LysR, substrate-binding [Xylella
           fastidiosa Ann-1]
 gi|71728989|gb|EAO31120.1| regulatory protein, LysR:LysR, substrate-binding [Xylella
           fastidiosa Ann-1]
          Length = 301

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 135/300 (45%), Gaps = 5/300 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D +++F  V  +G F  A ++L L++S+I + I+ LE  +G++LF R  R  +LT
Sbjct: 1   MQNMFDGVQLFVEVVEAGGFAKAGKRLSLTRSTIGKAIARLEMRLGVQLFQRTTRVQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +        +L   +  L++   + +G+L ++  +  G++ +   L+ +   +P
Sbjct: 61  EDGQQYYERCLRAIKELRAGEAMLEQGRREVAGRLHVSLPVLFGRHCVAPILRTYAREHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   +  +D+  D  D A+R       ++L  R+L        A+P YL    +P
Sbjct: 121 QLELELNFSDHHVDLIADGFDLAVRNGPLGNGTTLRARRLGNQRKILCASPTYLAARGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H+L+T+          +         +  P  S L+ N    I    V G G
Sbjct: 181 HTLADLADHDLLTYCRNDRNMA--WTLPDATGALVDIPITSRLRCNDLEVIADTAVDGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +A LP +++ +      L+ I  D  +     +  +P A     + +   N +  +   +
Sbjct: 239 VAWLPYWLLMERMQRGELIGIWGDRPSAVIECHVVWPAAQHVPLRSRLAINLLAAELPKY 298


>gi|332163045|ref|YP_004299622.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318604079|emb|CBY25577.1| transcriptional regulator, LysR family [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667275|gb|ADZ43919.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330859552|emb|CBX69894.1| putative transcriptional regulator [Yersinia enterocolitica W22703]
          Length = 300

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLISFLMVARERSFTKAAAKLGVSQSALSHSIRGLEERLELRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E+    L E   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  ERLANSLEPRFAEIESELDALSEMRARPAGNIRITAGEHAVDSVLWPVLKSFLAKYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  IRL + +    +  R    + M   A+P YL     P + 
Sbjct: 125 VEITVDNTLTDIVTGRFDAGIRLGEQVAKDMVAVRIGPDMSMAVVASPSYLAKYGIPTTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I     +P     + W    +    + R+   L  NS    +   V+G G+ 
Sbjct: 185 ADLQHHRCINM--RLPTMGGLYAWEFEKEGRELKVRVDGQLTFNSIRQRIDAAVIGFGLT 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++P+  VK    + NL+R++ED   P    Y  YP   ++T       + +
Sbjct: 243 MVPEDAVKTEIASGNLIRVLEDWCEPFPGYYLYYPSRRQHTTAFSLLADAL 293


>gi|114762412|ref|ZP_01441870.1| transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114545030|gb|EAU48034.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           HTCC2601]
          Length = 303

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+ +D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R L+ T
Sbjct: 1   MSY-FDNIRTFVRVYELGSMSAAGRDLRISSAVTSSRISQLEEHLGVRLFQRTTRSLSPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +R  +E+   +E+ + ++   +    G L +A  + +G+ L+   +  FL  YP
Sbjct: 60  EHGQSFYRGATEILDAVESAEAQIVNVTEHLKGALYVAAPLGVGRRLIAPQVPLFLAEYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L L ++ +D++ +  D A  L +P + S+L  RK+  +     A+P Y+     P
Sbjct: 120 DVSVRLRLTDRKVDLTTEGLDLAFFLGQP-EDSNLRIRKIADVPRVLCASPEYVARRGMP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                L  D+H  I      P   E    L T D P         + +    +  + + G
Sbjct: 179 DDGDALLADRHECINL--RFPGAAEFQWRLLTPDGPRRFAVTGRYESDDGDVLTDWALGG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI L P + V ++     LV + E        +   +    +   K + F  F+  +
Sbjct: 237 HGIVLKPVFEVAEHLKSGALVPVAEKTPPEPVQMACLFTHRRRQDPKTRIFMEFVIDR 294


>gi|24114092|ref|NP_708602.1| DNA-binding transcriptional activator GcvA [Shigella flexneri 2a
           str. 301]
 gi|30064153|ref|NP_838324.1| DNA-binding transcriptional activator GcvA [Shigella flexneri 2a
           str. 2457T]
 gi|82545106|ref|YP_409053.1| DNA-binding transcriptional activator GcvA [Shigella boydii Sb227]
 gi|110806748|ref|YP_690268.1| DNA-binding transcriptional activator GcvA [Shigella flexneri 5
           str. 8401]
 gi|24053222|gb|AAN44309.1| positive regulator of gcv operon [Shigella flexneri 2a str. 301]
 gi|30042409|gb|AAP18134.1| positive regulator of gcv operon [Shigella flexneri 2a str. 2457T]
 gi|81246517|gb|ABB67225.1| positive regulator of gcv operon [Shigella boydii Sb227]
 gi|110616296|gb|ABF04963.1| positive regulator of gcv operon [Shigella flexneri 5 str. 8401]
 gi|281602167|gb|ADA75151.1| Positive regulator of gcv operon [Shigella flexneri 2002017]
 gi|313647873|gb|EFS12319.1| glycine cleavage system transcriptional activator [Shigella
           flexneri 2a str. 2457T]
 gi|332753529|gb|EGJ83909.1| glycine cleavage system transcriptional activator [Shigella
           flexneri 4343-70]
 gi|332753666|gb|EGJ84045.1| glycine cleavage system transcriptional activator [Shigella
           flexneri K-671]
 gi|332754635|gb|EGJ85001.1| glycine cleavage system transcriptional activator [Shigella
           flexneri 2747-71]
 gi|332765765|gb|EGJ95978.1| gcvA transcriptional dual regulator [Shigella flexneri 2930-71]
 gi|333000061|gb|EGK19644.1| glycine cleavage system transcriptional activator [Shigella
           flexneri K-218]
 gi|333015119|gb|EGK34462.1| glycine cleavage system transcriptional activator [Shigella
           flexneri K-304]
          Length = 305

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 126/293 (43%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH L+   D   +  + +      +    +        +    ++Q  + G G+AL 
Sbjct: 185 DLAKHTLLH--DASRRDWQTYTRQLGFNHINVQ---QGPIFSHSAMVLQAAIHGQGVALA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 240 NNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|104781266|ref|YP_607764.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110253|emb|CAK14960.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 303

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VAR  SF   A++  +S + +S++I  LE  +G++L +R  R ++++E+G
Sbjct: 6   NLDDLDIFLQVARRASFAAVADERGMSAAFVSKRIRLLEESLGVRLLHRTTRRVSVSEEG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++++   +++  ++    +L     +P+G+LRIA+++ LG+  +   L E    YP + 
Sbjct: 66  ERVYQWAQQIFDTVQRMDDDLNAGQREPAGQLRIASSLGLGRRFVAPALSELAARYPRLD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L + ++ +D+  +  D  IR+   I +  LI + L        AAP YL     P  +
Sbjct: 126 IRLDVHDRLVDLIAEGVDLDIRVGNVI-APHLIAKPLARNRRVLCAAPSYLAEHGAPRVL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ +   +           L              L  N      Q+C+ G GI L
Sbjct: 185 ADLASHDCLVIKERDHPFGLWH--LEGPQGEESVRVTGALSSNHGEVAHQWCLDGRGILL 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
              + V D   +  LV+++ D    +  ++  Y   L  + K++    F
Sbjct: 243 RSWWDVYDSIADGRLVQVLPDYQQ-AADIWAVYTAPLAGSAKVRVAVEF 290


>gi|56460399|ref|YP_155680.1| LysR family transcriptional regulator [Idiomarina loihiensis L2TR]
 gi|56179409|gb|AAV82131.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR]
          Length = 303

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 133/298 (44%), Gaps = 7/298 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MSF D     +F  V   GS + A+ +L L +S+ISR+++ LE E G +LF+R   GL L
Sbjct: 1   MSFPDVTNYYLFAQVMACGSISAASRELGLPKSTISRKMALLEQEQGTRLFHRSRSGLKL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G +       +    E+ Q   Q    KP GK+ I+    L Q+LL   L EF+ LY
Sbjct: 61  TDVGREFLVHCERLVSAAESAQQVTQRLLDKPRGKVEISAPYALSQSLLVQVLPEFMSLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+++IQL++ N+ +++  +  D A+R+RK I+ SSLI R +       Y AP  +     
Sbjct: 121 PEVEIQLVVTNRPVNLIEEGIDIALRVRKNIEDSSLIARPISQAPQTLYIAPDLINQN-S 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               ++L                  +  + +            L  +  + + +  +   
Sbjct: 180 ITEPEDLL--TFEHLSMHYTNGRYGYELIHSSGLQKNIRIKPRLITDDMIVLREAAIKKL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  LP+Y+  D   +  LV ++ D   P   ++  Y         ++   +F+  K 
Sbjct: 238 GIVALPNYLCNDAVNSGELVPVLTDWHLPIGIMHITYSHRRGILPAVRVLIDFLAEKL 295


>gi|16326468|gb|AAL17790.1|AF361470_11 putative positive transcriptional regulator [Rhizobium
           leguminosarum bv. trifolii]
          Length = 299

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 122/292 (41%), Gaps = 9/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D+  LR F + A   +F   A +L ++ ++++R I+ LE ++G++LF R  R ++LT
Sbjct: 1   MN-DYKLLRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEEDLGVQLFVRTTRQVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+            L+  + +L  +     G+LRI+     GQ +L   L  F   YP
Sbjct: 60  TDGAIFAAQIQPAVQALDNARKDLMNTHKADHGRLRISAPTWFGQQVLPPILSAFRERYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I  ++ L +  ++I  D  D AIR+         I RK+  +H    AAP       + 
Sbjct: 120 KISFEISLADGLVNIIDDDYDLAIRISAAPSDKFTIWRKISVVHRILVAAPG--SRFCDM 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL   + + +     +       L+             +  NS   +      G+G
Sbjct: 178 KHPNELIPDDCLAYSGDSKRETWT---LSDGSGSATISAGRAVSANSGEVLASMAADGAG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +A+LP + V ++     L  +++D   P   +   YP       ++ +F  F
Sbjct: 235 VAMLPKFHVAEHLRTGRLAHVLQDWSPPDLWLTLYYPPYQALPPRIASFSKF 286


>gi|309779204|ref|ZP_07673967.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308922008|gb|EFP67642.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 301

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 132/295 (44%), Gaps = 13/295 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L +F  VA   SFT AAE L + +  +S  I  LE +VG+ L +R  R + LTE G
Sbjct: 3   NLDALLIFARVAEMTSFTRAAESLGIQKGRVSTVIRTLERDVGVALLHRTTRSVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    ++  + +  Q     +     G+LR+    +L ++++   L + +  +P++Q
Sbjct: 63  REFYARARDLLAEAQELQSMFLANGGPLRGRLRVDLPTELARSVVVPALPQLMAAHPELQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IR   PI   ++I R L  + M   A+P YL+    P ++
Sbjct: 123 LELSSTDRRVDLVQEGFDCVIRFG-PITDETMIARPLGKLRMTNAASPAYLERYGVPHTL 181

Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++L    H ++ +   +      + +    D     P  S +QVNS  +     + G G+
Sbjct: 182 EDLLSQGHQMVHYTLTLGARHAGWQYPDG-DGYAWLPLPSAMQVNSVQTYHAAGLAGIGL 240

Query: 242 ------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 AL P      +  LV ++  +        F        + +++ F  +I
Sbjct: 241 IQAGYTALAPHI---QSGALVEVLPHLRPEPLPASFVVTHRRNLSPRVRVFMAWI 292


>gi|307131378|ref|YP_003883394.1| hypothetical protein Dda3937_03126 [Dickeya dadantii 3937]
 gi|306528907|gb|ADM98837.1| Hypothetical transcriptional regulator ycjZ [Dickeya dadantii 3937]
          Length = 297

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/286 (28%), Positives = 130/286 (45%), Gaps = 6/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G +L
Sbjct: 8   DLTAFVVVAEERSFTKAALRLGMAQSALSQIVRRVEERLGLRLLSRTTRSVAPTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H L+T    L E   +PSG LRI T     + +L   +K  L   PDI+I++
Sbjct: 68  LAKLGPMLHDLDTVIGSLGELRDRPSGTLRITTVEHAAKTILMPAMKRLLADNPDIRIEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D+  +D+  +  D  IRL   I    +  R    I M   A+P YL     P +  EL
Sbjct: 128 NVDHALVDVVANQFDAGIRLGGDIDKDMIAVRIGPDIPMVVVASPAYLARRPAPTTPAEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+LI F   +P       W L +  R I       L VN+   ++   + G G+A + 
Sbjct: 188 FDHSLINF--RLPTSGTLIGWPLMSDGREIRVRGQGQLVVNTIDLLVDAVLDGHGLACIH 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
              V+   DN NL++++  +       +  YP    ++     F  
Sbjct: 246 LDQVQRFIDNGNLIQVLSGLTRDIPGYHLYYPNRRHHSSAFSLFVE 291


>gi|162456046|ref|YP_001618413.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161166628|emb|CAN97933.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 345

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 130/298 (43%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L++F  VA  GSFT A E L + ++ +S ++  LE E+G +L  R  R + LT
Sbjct: 43  MTVDVGSLKIFVKVAELGSFTRAGEHLGMPKARVSLRLKALEAELGTRLLQRSTRVVRLT 102

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L      +  + +      Q +     G++RI   ++  ++++   L E L  +P
Sbjct: 103 PDGEELLPRARRLALEADELGAMFQAARG-LRGRVRIDLPVNFARDVIIPRLPELLARHP 161

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++++ L   ++ ++   +  DC +R+  P     L+ R+L  + M   A+P YL+    P
Sbjct: 162 ELEVLLSTTDRRVEPLREGFDCVLRVGAPGGD-GLVGRRLGLLRMMNCASPSYLRQYGTP 220

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++LD+H L+ +   +      F +          P  S + VNS  +    CV G G
Sbjct: 221 RRIEDLDRHLLVHYSTTLGAEAPSFEY-PHDGGYREWPMRSVVTVNSADAYFAACVAGLG 279

Query: 241 IAL------LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I        LP         LV ++  +      V   +        +++A  +++  
Sbjct: 280 IIQAPRAGKLPSITA---GELVEVLPSLTCAPMPVSLLHTHGRSVPRRVRAVMSWLTE 334


>gi|126441651|ref|YP_001057764.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126221144|gb|ABN84650.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 310

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 121/299 (40%), Gaps = 6/299 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F   A  GS + A  +L+L+ ++ S +++ LE +V  +LF R  R L LT+
Sbjct: 1   MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +    L+     LQE     SGK+R+++T D G++ L   L EF   +P+
Sbjct: 61  EGRLYLNCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRHQLLDWLDEFNTRHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   +   +   ++  D  D AIR   P    +LI R+L        A+P ++     P 
Sbjct: 121 VTFAVTASDASSNLWQDEIDLAIRFAAP-PDGALIARRLAANRRVLCASPAFVDRYGMPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +                        +    P  +  + N      ++ + G GI
Sbjct: 180 DPLDLARFPCNVITVASGPLNVWRFTRGDDTQTYTVPLANAHETNDGGLTREWTIRGYGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           AL   + +  +     L  ++ D       ++  Y        +++   +F+  + AR+
Sbjct: 240 ALKSIWDIAADVRAGRLRVLLPDWRHHDAPLHAIYHSKRYMAPRVRVLLDFLVERFARE 298


>gi|167644427|ref|YP_001682090.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167346857|gb|ABZ69592.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 310

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 133/295 (45%), Gaps = 13/295 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L++F  VA   SFT AA+ L + +  +S  +  LE +VG  L +R  R + LTE G
Sbjct: 3   NLEALQIFARVAEMASFTKAAKSLGIHKGRVSTAVRQLEADVGAGLLHRTTRAVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++    E  +           GKLR+    +L ++ L   + +F+  +P+++
Sbjct: 63  RAFYTRARDLLADAEDLRSMFASEHTSLRGKLRVDLPTELARSTLIPAIPQFMAAHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +D+  +  DC +R+  P+   +LI R +  + M   A+P YL     P ++
Sbjct: 123 LEISSTDRRVDLVQEGFDCVVRIG-PVVDETLIARPIGALRMVNAASPAYLARRGTPRTL 181

Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++L    H ++ +   +      + +    D          L VNS  +     + G G+
Sbjct: 182 EDLVSQGHAIVHYTPTLGAKPFGWEYPDGDDYS-SLALPGALSVNSVQTYHAAGLAGVGL 240

Query: 242 ------ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 A+ P +   ++  +V+I+ D+      V+F        + +++A  ++I
Sbjct: 241 VQAGLAAMSPYF---ESGEMVQILPDLPPEPLQVWFVVAHRRNMSRRVRALMSWI 292


>gi|37675879|ref|NP_936275.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37200419|dbj|BAC96245.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 304

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 130/295 (44%), Gaps = 10/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  SGSF+  A++L +S SS+SR I+ LE  +  KL  R  R + L+  G 
Sbjct: 10  LSEMAIFVNVVESGSFSKTAQKLGVSPSSVSRSITRLENVLEKKLLERTTRQMRLSATGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++ + S++ +  +      Q    + SG LRIA    L + +L   + +F+  +P + +
Sbjct: 70  EVYSLCSDMLNAAKMAVSAAQTDKSEASGSLRIAAPKALSRQVLMPLVLDFIAEHPKVAL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + +  ID   D  D  I++     +  L+ R L    +   A+P YL+    P    
Sbjct: 130 QLKVADHYIDPIGDEVDVIIQITDK-PTEGLVARSLGRCRLVLCASPDYLQQQGTPNHPD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN +  G+     + DF       R I         VN      +  + G GI++ 
Sbjct: 189 DLVWHNCLCLGENPRDRVWDFT---IGSRKISVNVKGSFAVNHSEIRREAVLRGLGISVF 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P++ ++   ++  L  ++ D          +   Y ++     ++K F  ++  +
Sbjct: 246 PEFAIRPYIESGALTELLSDWHLGGNYQGQILAQYAQSKYVPQQIKTFIEYLQQR 300


>gi|229591640|ref|YP_002873759.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363506|emb|CAY50742.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
          Length = 307

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 132/292 (45%), Gaps = 5/292 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V+  GSFT AAE+++L+ S+IS+ I+ LE  +G++LF R  R L+LT+ G 
Sbjct: 7   LKGIDVFVCVSDHGSFTAAAEKMNLTASAISKSIARLEKRLGVRLFQRTTRRLSLTDAGV 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  + V   LE  ++ L   + +  G++RI     LG+  +   L  FL  +P +  
Sbjct: 67  AFYRTCTGVLADLEEAELLLHVENTEARGRVRIDLPSALGRAQVLPVLLPFLQAHPLLLA 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLSI 183
                +  I+   +  D  +R+         + ++++    H  YA+P YL     PLS 
Sbjct: 127 HFTFGDGFIEPFEEGVDIVVRIGGTNAWPETVGQRVLAHEWHSLYASPVYLSRHGTPLSE 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L+ H  I +G +  +    +N+      P        L V +   ++   + G GI  
Sbjct: 187 HDLEHHQCIAYGWVDGRT-SPWNFADEQGAPRRRQITPQLVVGNGDGLLMAALAGCGIVQ 245

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP ++V+       LV ++  + T    +   + ++ +   K++     +  
Sbjct: 246 LPSWMVQQPLQEGTLVEVLPHLATQGAAITLGWVKSRQALPKVRVVLEALVA 297


>gi|149374884|ref|ZP_01892657.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
 gi|149360773|gb|EDM49224.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
          Length = 295

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 124/292 (42%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  +   GSFT AA++   S + IS+ +  LE+  G KL  R+ R ++ T+
Sbjct: 1   MDRLKGVEYFKRIYELGSFTAAADEFQCSNAVISKYVRFLESWTGSKLINRNTRTISFTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     +  +       + ++    SG+L IA+ + L   +L   + +F   +P 
Sbjct: 61  EGERFYTYCLSIIEQTSEMLDSVADT-GDLSGELVIASPVSLSIKVLSPLILQFKKEHPS 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L + ++  D+     D AIR  +  + SSL+  +L  +     A+P YL     P 
Sbjct: 120 LSLRLQMSDQLTDLVGSGVDVAIRGIEAPEDSSLVAMRLGALDRILVASPGYLAEAGVPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H  + +         +F    +  +         L  ++ + +++    G GI
Sbjct: 180 SVDDLSTHQCLVYSMSSDAKRWEFLLSRSSGQTKSVSVTGPLVADNSMMLIEAVKEGLGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A++P   V +      L ++         ++Y  Y +      + + F  F+
Sbjct: 240 AMVPRAYVAEELRTGTLQQLKLGAEPVPRSIYAMYSDRRYLPRRAREFVQFL 291


>gi|153832180|ref|ZP_01984847.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148871491|gb|EDL70346.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 293

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 133/292 (45%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L++F  V   GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT  
Sbjct: 1   MKIDDLKLFIKVVELGSFTAAANALDLPRANVSRRIGELEQSLGAQLFHRTTRSLSLTNN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    +    L++   ++   + +  G++++    +    L++  L +F   YP +
Sbjct: 61  GEAYYENLQKALTMLDSANEQVSNDTNEVRGRIKLGLLPE-TDELVRPILFDFHDKYPHV 119

Query: 123 QIQLI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +  ++N   D+     D A      +  S ++ RKL+T+     A+P+YL+    P 
Sbjct: 120 ELDIRNINNGFRDMFQQGLDIAFH-GGALFDSDIVARKLLTLDRCLVASPNYLETHGMPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++++L +H  + F    P    D  W          P+   L  N+   I    +L  GI
Sbjct: 179 NLEQLKEHQCVCF--RWPNGEVDNVWHFQEQSVQLSPK---LISNNIGFIKNATILNRGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P  +V+   ++ +LV+++        + +  YP+    +   +   + +
Sbjct: 234 TFMPKVLVRRELESGDLVQLLSHYSVTEESGWLLYPQPKTLSQASRLLIDHL 285


>gi|307824182|ref|ZP_07654409.1| transcriptional regulator, LysR family [Methylobacter tundripaludum
           SV96]
 gi|307734966|gb|EFO05816.1| transcriptional regulator, LysR family [Methylobacter tundripaludum
           SV96]
          Length = 299

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 126/294 (42%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + V+  V  +  F   A +L +S  +++R ++ LE  +G+KL  R  R + +TE G 
Sbjct: 4   LHLMSVYVAVVDAEGFAGGARKLQMSPPAVTRAVAALEERLGVKLLNRTTRYVRMTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           K +     +    +         + +P G+L +  ++  G+  +   + E+L  YP +++
Sbjct: 64  KYYEDAKHIIALADEADDAALGINAEPRGQLTVTASVLFGRMYVMPGIVEYLRRYPAVEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +  ++ +++  +  D AIR+   +  SS    ++  +     A+P YL     P + +
Sbjct: 124 NALFVDRVVNMLEEGVDMAIRIGD-LPDSSYRALRVGAVRRVVCASPDYLAARGIPQTPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H++I    L P     F       +P+       L ++   S     +   GI  L
Sbjct: 183 DLPAHDIILARGLNPANEMRF---VRDGQPVTVKLQPLLSISDNDSGAYAAMASLGITRL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y + +      L  ++ +  +P   ++  + E   ++ K+++F + +  + R
Sbjct: 240 LSYQIAEPLQTGKLKIVLSEFESPPVPIHILHREGRHSSAKIRSFVDMMAERLR 293


>gi|304395016|ref|ZP_07376900.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304357269|gb|EFM21632.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 298

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 122/282 (43%), Gaps = 9/282 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS + A+  L +S+  +SR +  +E   G +L +R +R LTLT  G    + 
Sbjct: 9   VFNRICELGSLSAASRALGISRPMVSRYLEEMERWAGTRLLHRSSRRLTLTPAGEATLQK 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           T ++    E  Q E  +    P+G LRIA       +L+   + +FL  YP ++I+L ++
Sbjct: 69  TRQLALLSEAIQQETTQ--GVPAGTLRIACAHFTALHLVGPVIPDFLARYPALRIELDIN 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ + +  +  D AIR+    +  + I R+L        A+P YL+    P +  +L +H
Sbjct: 127 NQPVSLISERIDLAIRITDAPEPGA-IARRLGECRSVLCASPEYLQKHGIPQTPDDLTRH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + +        + +++ A     I             L +    +   GIA++P+   
Sbjct: 186 NCLYYSQF---AGQSWHFTAADGEKITAAVKGNFSAGISLLLCDAAIAHCGIAMVPEQEA 242

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +   +   LV ++ D       ++  Y      +  L+   +
Sbjct: 243 RRALEAGKLVSLLPDYEPRRIGIWGLYLSREHQSAALRLMLD 284


>gi|260430570|ref|ZP_05784543.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260418599|gb|EEX11856.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 309

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 135/301 (44%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+ +D +R F  V   GS + A   L +S +  S +IS LE  +G++LF R  R L+ T
Sbjct: 1   MSY-FDNIRTFVRVYELGSMSAAGRDLRISSAVTSSRISQLEERLGVRLFQRTTRSLSPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +R  +E+   +E+ + ++   + K  G L +A  + +G+ L+   + +FL  YP
Sbjct: 60  EHGKSFYRGATEILEAVESAEAKIVNVTEKLKGSLYVAAPLGVGRRLIAPKVPDFLAEYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L L ++ +D++ +  D +  L +P + S+L  RK+  +     AAP Y+     P
Sbjct: 120 EVSVRLRLTDRKVDLTTEGLDLSFFLGQP-EDSTLRIRKIADVERLLCAAPSYIARRGMP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                L  D H  +      P   E    L T + P         + +    +  + + G
Sbjct: 179 ADGDALIRDGHECLNL--RFPGAQEFQWRLETPEGPRRFAVTGRYESDDGDVLTDWALSG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI + P + V ++     LV + +        +   +    +   K + F  F+  +  
Sbjct: 237 QGIVMKPRFEVAEHLASGALVEVAQASPPEPIQMACLFSHRRQQDPKARIFMEFMISRIS 296

Query: 296 D 296
           D
Sbjct: 297 D 297


>gi|188535171|ref|YP_001908968.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis
           Et1/99]
 gi|188030213|emb|CAO98099.1| Transcriptional regulator, LysR family [Erwinia tasmaniensis
           Et1/99]
          Length = 302

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 135/288 (46%), Gaps = 7/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V  + S+T AA+ L L++SS+S++IS LE  +G KL  R  R + +TE G
Sbjct: 6   NLHGMIIFAKVVETLSYTEAAKTLGLAKSSVSKEISALEVRLGAKLLQRTTRRIQVTEVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     + +++++  + +++   +P+G LR+A  +  G   +   L  F+     + 
Sbjct: 66  MTYYHYCYRILNEVKSADLFIRQFHEEPTGSLRVAAPVTFGCQCIVPALNRFVAGNIHVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ ++ + D+ D AI + + +       R L+ I    YAAP YL N     S 
Sbjct: 126 VDLDLTDRPVNFADDHIDLAIAITRDLPDHR-HYRPLMDIAWGLYAAPDYLLNRPAVTSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I F    P       +     +   E R S  + N+ ++++   V  +GIA 
Sbjct: 185 DDLARHEFILFRG--PAHTISLPFRKEKQKKDIEVR-SRFRANNSIALLNSAVAQTGIAY 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LP+YI ++      LV+++ D     +  Y         + +++ F  
Sbjct: 242 LPNYIAREAVEVGKLVQLLPDWEMDIYKSYVLMKSDSFISPRVRLFIE 289


>gi|190890986|ref|YP_001977528.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190696265|gb|ACE90350.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
          Length = 297

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 130/297 (43%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D + V   V   GS + A+  L    +++SR+IS LE  +  KL  R  R +TLTE
Sbjct: 1   MDRLDAMSVLLAVVEHGSLSAASRHLRSPLATVSRKISELEAHLHAKLLQRSNRKITLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  ++E  Q         P G+L +   I  G+  +   + +FL  YP+
Sbjct: 61  AGRSYVEAAREILDRVEEAQRTAAGEYSAPKGELTMTAPIVFGRLHVLPVVVDFLKAYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L ++  ++  D+ D A+R+   +  S+LI  +L  I    YA+P YL     P 
Sbjct: 121 INLRLMLGDRLSNLVEDHIDLALRIG-TLVDSNLIATRLGAIRRTVYASPDYLARNAPPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ ITF ++       F+      R +  P  S L VN+  + +   V G GI
Sbjct: 180 QPSDLSAHDCITFENMASIRSWTFS---DGKRDLAVPIRSRLAVNTAEAAVDAAVAGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y          L  ++ D   P   V+  YP       KL+A  +F   + R
Sbjct: 237 TRVLSYQAARAETAGLLAPLLSDFEPPPAPVHLVYPSQGLVPLKLRALLDFATPRLR 293


>gi|83718577|ref|YP_440941.1| DNA-binding transcriptional activator GcvA [Burkholderia
           thailandensis E264]
 gi|83652402|gb|ABC36465.1| glycine cleavage system transcriptional activator [Burkholderia
           thailandensis E264]
          Length = 320

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 131/297 (44%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA +L ++  ++S Q+  LE E+G+ LF RH + L LT+ G 
Sbjct: 9   LNALRVFEAAARHESFSRAANELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGG 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L     E++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 69  RYAQQVRAALALLADATREIRASDRDK--RLAVSTLPSFAARWITPRIGPFIEQHPEIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 127 ELRASDTLVDFARDDVDVAIRFGYGV-YPGLYVEPLLDETFFPVCAPT-LNGGVLPETPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 185 DLVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         +VR+ +      +  +F  P +L  T +++AFR ++  +   +K
Sbjct: 240 RRSLAMPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLLDEIARFK 296


>gi|167615094|ref|ZP_02383729.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257141667|ref|ZP_05589929.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 299

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 122/296 (41%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  I  LE EVG  L  R  R L +T+
Sbjct: 6   DVNLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHIQRLEAEVGASLVVRTTRRLNVTQ 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    ET    +   +    G LR++  +D G  ++   L      +P 
Sbjct: 66  AGRTFYDACRDILRATETALAAVAGEAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPA 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P 
Sbjct: 126 LDIELQCDDRVVDLVRDSLDVAIRLGR-LADSNHRAVKLGGFERWLVASPAFVARHGAPP 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L     +    +    +E  N                   N+  +     + G G 
Sbjct: 185 APEALGALPYVMLSTVPRTTLELAN---ARGERASVRCRRAFASNTATACRAAVLAGGGF 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +   +   D+     LVR++ D   P   ++  +P A   + K++A  + +  + 
Sbjct: 242 GVATSFSSADDIAAGRLVRLLPDWSFPPGDIHAVFPSASHPSAKVRALIDALKTRL 297


>gi|186471572|ref|YP_001862890.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197881|gb|ACC75844.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 297

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + VF  +AR  SFT AA +L +SQS++S  I  LE  +G++L  R  R ++ TE G
Sbjct: 5   NLNDILVFLAIAREKSFTRAAAKLGVSQSALSHTIRDLEARLGLRLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    +++ +   L +   KP+G +RI  T    + ++   L++ L+ YPDI+
Sbjct: 65  EELFQAVAPRIEEIDASLAALSDFRDKPAGVIRITATDHPIETVIWPKLRKLLISYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    +I  +  D  +R    +    +  R    I M    +P Y  N   P S 
Sbjct: 125 VEVTVDYGLSNIVEERYDIGVRFGDQVAKDMIAVRISPDIPMAIVGSPSYFANRNHPKSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  H  IT      K +  + W     +   + R+   +  N+   ++Q  + G G+A
Sbjct: 185 EDLLNHECITLRMTTTKAL--YAWELKKGKRETQARVGGQVTFNTQPQMVQAALDGFGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+  V +      L  +++D        +  YP   + +       + +  +
Sbjct: 243 FVPEDAVVNYINKGQLQSVLKDWCPIWPGYHAYYPSRRQTSRAFSLVIDALKHR 296


>gi|167717863|ref|ZP_02401099.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 321

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G 
Sbjct: 9   LNALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGG 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L     E++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 69  RYAQQVRAALALLADATREVRASERDK--RLVVSTLPSFAARWITPRIGPFIERHPEIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 127 ELRASDSLVDFARDDVDVAIRFGHGV-YPGLHVEPLLDETFFPVCAPT-LNGGMLPETPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 185 DLVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         +VR+ +      +  +F  P +L  T +++A RN++  +   ++
Sbjct: 240 RRSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRNWLLDEIARFR 296


>gi|217979712|ref|YP_002363859.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
 gi|217505088|gb|ACK52497.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 307

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 133/293 (45%), Gaps = 7/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++RVF  V  +GSF+ AA  + ++ SS ++ I  +E  +  +L  R  R L LT +G   
Sbjct: 8   EMRVFLQVVAAGSFSAAARIVGMTPSSTAKLIGRIEGRLAARLIERSTRSLRLTSEGELY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +   L+    E+   +  P+G +RI  ++  GQ+ L   L  F   +P I++ L
Sbjct: 68  RERAEAILGDLDALDAEVVGEARAPTGLIRINVSVPFGQHCLMPQLPAFAREFPKIRLDL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+    AD A R+ + +  S L+  +L        A+  YL+    P ++ +L
Sbjct: 128 TLTDDVVDLYATGADIAFRIGQ-LADSELLAIRLGDARRRIVASKTYLEEYGIPRTVADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D+H  + F       +     L    R         +  N+  ++     LG G+A L +
Sbjct: 187 DRHKCLGFNFRRAAAVWP---LQAGGRLTDREAQGAITANNGETLRCLATLGLGLARLAE 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + +K++     LV +++D +  S  V+  Y        +++AF +F+  + R+
Sbjct: 244 FHIKEDLKAGRLVTVLDDALVDSEAVHALYLGREHAPRRVRAFLDFMTPRLRE 296


>gi|116694714|ref|YP_728925.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529213|emb|CAJ95560.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 300

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 123/293 (41%), Gaps = 9/293 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D    ++ F  +   GS T AA  LH S  ++ R ++ LE E+ ++L  R  R L+LT
Sbjct: 4   AMDKLRAMQTFVRIVDEGSLTAAATTLHTSLPAVVRTLAALEFELQVRLLNRTTRRLSLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G         +   ++  +  L  S V+PSG+L +  ++  GQ  +   +  F+  YP
Sbjct: 64  GEGRSYLDSCRRILATIDEVEAGLTASHVEPSGQLTLTASVLFGQMYVAPAVTRFVQRYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++ ++   ++ +++  +  D  +R+  P+  S+L+ + + +I     A P YL+    P
Sbjct: 124 RVRCRMEFTDRVVNLLEEDLDVGVRIG-PLADSTLVAQTVGSIRRVVVATPAYLRKHGVP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL   N + F                  R         L+ N     +  C  G+G
Sbjct: 183 RHPEELASANCVRFTGNHAHWWT----FQEDGREFHVQVSGNLEFNQTAPAVAACAEGAG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 Y V    +   L  ++E    P++ +   YP A     + +AF  ++
Sbjct: 239 FGHFLSYQVAQLVEARKLRIVLEAFEQPAWPLSLIYPHARLLPARTRAFIEWM 291


>gi|66767763|ref|YP_242525.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66573095|gb|AAY48505.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 304

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 135/291 (46%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+VF  VAR GSFT AA QL +SQS++S  +  LET +GI+L  R  R +++TE G
Sbjct: 10  NLNDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    +++     L     KP+G +RI T        L   L + L  YPD++
Sbjct: 70  MRLFDTVAPRLEEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSKVLPDYPDLK 129

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    DI  +  D  IRL   +    +         M   AAP Y  +   P   
Sbjct: 130 VEITIDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPRQRMAVVAAPSYFVHHTIPAVP 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL +HN I+    +P       W    D    + R+      N   ++++  + G+G+A
Sbjct: 190 AELAQHNCISL--RLPTHGGLLPWDFEKDGREQKVRVDGQWTFNGSSAMLRAALAGAGLA 247

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+ +V D+     L R+++D   P    Y  YP   +++  LK   + +
Sbjct: 248 FLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALKVVIDAL 298


>gi|239503556|ref|ZP_04662866.1| regulatory protein LysR:LysR, substrate-binding [Acinetobacter
           baumannii AB900]
          Length = 304

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 133/299 (44%), Gaps = 15/299 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F   AR  SF+ AA++L+++ +++ + +  LE  +G  LF+R   G   L  TE
Sbjct: 7   LNALRAFEASARHKSFSAAAKELNVTPAAVGQLVRTLEDWLGFPLFHRQTNGKNRLVATE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               +       + KL     +L++     SG L IA +    +  L   +  F   YPD
Sbjct: 67  LTESVLPDIRAGFDKLTLALEKLKQ--DSLSGVLNIAVSPAFAEKWLLPRIDHFQKQYPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L ++ K +D      D  +R  +  Q   L   KL+   ++   +P +L      L
Sbjct: 125 IDIRLDINLKTVDFLEQKVDVGVRYGQG-QWQGLEAVKLMDEEVYPVCSPAFLNEHSSLL 183

Query: 182 SIQELDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           +  +L    LI    +    +     +WL +V   +G+  IS  +Q+NS  +++Q  + G
Sbjct: 184 TPSDLKNITLIHDLSMEKHQQFPGWQSWLKSVG--LGDINISRGMQINSSSAVLQAAMEG 241

Query: 239 SGIALLPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+AL    + + +     L+R+      + SF+ Y  Y     N  K+K   ++ F +
Sbjct: 242 HGVALARSIMAQKDIQTGRLIRLFPQIHFSSSFSYYLVYRPEYANLPKVKICLDWFFEE 300


>gi|319796026|ref|YP_004157666.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598489|gb|ADU39555.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 315

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 128/295 (43%), Gaps = 6/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F  +  +GS + AA ++  +Q ++SR++  LE  +G++L  R    + LTE G 
Sbjct: 11  IELMQTFIHIVEAGSLSAAALRMDATQPTVSRRLQALERSLGVRLLRRSTHAMKLTEDGE 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    E+       + +L+    +P G LR+     LGQ LL G L ++L  YP + +
Sbjct: 71  RCYERAKELIANWRAFEADLRGVGDEPEGTLRVVAPHALGQRLLVGPLADYLRAYPRVSV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D   +  DCAI++ + +  +  +  KL  +     AAP  L+  + P    
Sbjct: 131 EWLLHDRRPDFIAEGVDCAIQVGE-VTDTMAVAIKLSEVPRVVVAAPSVLEGRKPPTHAS 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +   +         ++  +           P   CL  +S  ++     +G G  + 
Sbjct: 190 ELAELPWLALRTFYRNEVQLTH--RPSGEIARVPIRPCLSTDSLYALHSAAAMGLGACIG 247

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +++ D+     LV+++         VY  Y  A     +L+ F   + L   D
Sbjct: 248 SAWLMNDDIAAGRLVQLVPQWHAAPLPVYLTYSPARFQPARLRRFIEMVRLAMAD 302


>gi|298717322|ref|YP_003729964.1| RuBisCO transcriptional regulator [Pantoea vagans C9-1]
 gi|298361511|gb|ADI78292.1| Probable RuBisCO transcriptional regulator [Pantoea vagans C9-1]
          Length = 300

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 124/283 (43%), Gaps = 5/283 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F      GSFT AAE+LH++ S++S+ +S LET +G +L  R  R L LT+ GS
Sbjct: 6   LKDILPFVASVECGSFTAAAERLHVTGSAVSKSVSRLETRLGSRLLERTTRSLNLTDAGS 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    V   L   +  L      PSG+LR+A     G+  +   L  F    P++ +
Sbjct: 66  AYYQTCLRVLEDLAEAEAVLAAQRTIPSGRLRLAVPTTFGRLNVMPVLMPFCQQNPELAL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L L ++ +D+  +  D A+R+   P   +SL  R +    M   A+P YL     P + 
Sbjct: 126 SLSLSDRFVDLFEEGVDVAVRIGGAPDLPASLGWRNMGREKMQFCASPAYLDREGRPENE 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H  I + + +    + + +     +P        L +    + +Q  + G G+A 
Sbjct: 186 AALLNHPAILY-ERVDGTTKPWLFTTEDGQPHWRDVPYRLALGDVDAQLQAVIAGLGVAQ 244

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           +P ++++       L  IM  +     T+   +P   +   K+
Sbjct: 245 MPSWLIQRAVAAGELEIIMPQLQPDGLTLSVVWPRRKQFLPKV 287


>gi|170693763|ref|ZP_02884920.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141181|gb|EDT09352.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 328

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 126/298 (42%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF      GSF  AA +  LS +   + +S +E ++  +L  R  R L+LT+
Sbjct: 1   MDRLTGMAVFVAAVDEGSFAAAARRFGLSAAMAGKYVSAIEAQLNARLLQRSTRRLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +    +    E  ++     G LR+A  +  G   L   L  ++  +P 
Sbjct: 61  VGHAYYERCKRILDAYDEANREASDAHGIARGVLRVAAPVTFGAMHLGEVLARYMEQFPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++ L ++ +D+     D A+R+ + ++ S+LI R+L    M   A+P Y+     P 
Sbjct: 121 VNVEVALSDRYVDLLESGVDVAVRIGR-LRDSALIARRLAPCRMVICASPDYIARNGMPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L +   +TF + +   + D+    +  R         L  N+   ++   + G+G+
Sbjct: 180 SPDDLRQAPRLTFSEAV--SVGDWTLFDSERRAHVIDGPCRLAANNTQMLLAAALAGAGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              P ++  +      LV ++ +       +   YP A     K++ F +++     D
Sbjct: 238 VYGPTFVFGEQIACGKLVELLPEYQASELAIQAVYPSARHLPLKVRHFLDYLAAAFGD 295


>gi|89071934|ref|ZP_01158530.1| putative transcriptional regulator (LysR family protein)
           [Photobacterium sp. SKA34]
 gi|89052035|gb|EAR57486.1| putative transcriptional regulator (LysR family protein)
           [Photobacterium sp. SKA34]
          Length = 297

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 136/298 (45%), Gaps = 8/298 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            +  D LR F VVAR GSF  AA  L +  S++SR+I  LE ++ ++L  R A  +TLT 
Sbjct: 4   RYSLDDLRCFCVVARHGSFKAAATSLGMPLSTLSRRIRQLEDDLQLRLLNRDAHRVTLTS 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  + ++ ++ +L     EL      P GK+RI+  I+ G   L+    +FL+ YP+
Sbjct: 64  TGEQYFQRSAILFDELHDIDQELHRDKYYPQGKIRISAPINAGSKYLRKIFYDFLIQYPE 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ++L     +ID+  +  D A R+   +     I + +  IH    + P Y  +     
Sbjct: 124 IQLELNFSGANIDVEAEGIDMAFRVG-TLSDEDWIAKPIKDIHFIFCSHPDY--DVSTLS 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +EL  H LI    +  +  E  N  +             L+V+    +++    G GI
Sbjct: 181 NPEELHDHPLIICRPI--RVWEMINHESGEKYDYSPKENVRLEVDEGFMMLEAIKTGIGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +P Y+      N  + R++    + + T++  Y +      +++   +F+    +D
Sbjct: 239 GYVPSYLAYPMIANGEIKRVLPAWSSEARTMFMLYRDREHIPMRVRLLIDFVMKHFQD 296


>gi|170719412|ref|YP_001747100.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757415|gb|ACA70731.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 303

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 130/294 (44%), Gaps = 4/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L +R +R  +LTE G
Sbjct: 3   DLNSLYYFTQVVEHGGFAPAGRALDMPKSKLSRRIADLEDRLGVRLLHRTSRHCSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E     ++ +  +P G +RI+    L  + +   L  ++L YP ++
Sbjct: 63  QAYYNRCLAMRVEAEGAAEIIERNRSEPRGLVRISCPTTLLNSWVGPMLTRYMLKYPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D A+R+R  P++++ ++ + L          P YL++  +  +
Sbjct: 123 LFIESTNRRVDLLHEGFDVALRVRFPPLENTDMVMKVLSNSTQCLVGHPQYLEHLPKGFN 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q L     + +G    +   +      + R I  P    +  +   ++  + V G GIA
Sbjct: 183 PQLLGTLPSVHWGSAQREYQWELFQGEDMSRSIVIPHTPRMVTDDLFALRHFVVAGVGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP   V+++     LV ++         V+  +P        +++  + +  +
Sbjct: 243 HLPRVAVREDLAEGRLVELLPQWHPRCGIVHAIFPSRRGLLPSVRSLIDHLAEE 296


>gi|325924019|ref|ZP_08185602.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325545513|gb|EGD16784.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 332

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 138/295 (46%), Gaps = 6/295 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           S D  + LR F  VA  GSFT A E L L ++S+S  +  LE  +G +L +R  R + LT
Sbjct: 31  SMDTMESLRAFLRVAELGSFTRAGETLGLPKASVSTAVQRLEASLGTQLLHRTTRRVQLT 90

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  ++ + ++   ++  Q   Q    +  G+LR+  +  + +N +   L  FL L+P
Sbjct: 91  GDGTAFYQRSRDLLDDMDELQGMFQRDRGQLRGRLRVDMSSGIARNFVIPALPVFLALHP 150

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++   ++ +D+  +  DC +R+   ++ ++L+ R L    +   A+  YL     P
Sbjct: 151 QLEVEISGTDRRVDVVREGFDCVLRVG-TLEDTNLVARPLGAFRIINCASADYLTRRGIP 209

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L +H+L+ +   + +    F +       +  P    + VN+  + +   + G G
Sbjct: 210 RCLDDLAQHDLVHYVTTLGQRSPGFEYHDGQTYQLL-PMRGPVTVNNGDAYLAAALAGLG 268

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I   P   ++   D+  L+ ++  +      V   Y +      +++AF +++  
Sbjct: 269 IIQAPASPLRAHLDSGALIEVLAAIAPEPMPVTLLYAQRRHLPQRVRAFMDWVAE 323


>gi|260567034|ref|ZP_05837504.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|261754358|ref|ZP_05998067.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|260156552|gb|EEW91632.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|261744111|gb|EEY32037.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
          Length = 294

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 126/288 (43%), Gaps = 8/288 (2%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V   G+ + A      S + +S +I  LE  +G++LF R  R LT TE G   +    +
Sbjct: 2   RVVELGNLSAAGRDQRASPAVVSNRIKELEKHLGVRLFNRTTRKLTPTEHGRVFYDGALK 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +   ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI+++L L + +
Sbjct: 62  ILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEVRLRLSDHE 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL--DKHN 190
           +DI  +  D A +L   +++S+L  R ++       AAP YL+    P S + L  D+H+
Sbjct: 122 VDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPEALLSDRHH 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            +      P   E +  L T +             +    + Q+ + G GI   P + VK
Sbjct: 181 CLLL--RFPGSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGGRGIINKPLFEVK 238

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 239 EYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 286


>gi|170747519|ref|YP_001753779.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654041|gb|ACB23096.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 316

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 129/297 (43%), Gaps = 6/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               +++R F  VA  GS +  A +  + QS+I+R +  LE  +G+ L  R  R L LT 
Sbjct: 5   DVTLERMRSFVRVAERGSLSAVAREFGVGQSTITRHLRELEDALGVALISRTTRRLALTA 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +  +  + H +E    E ++    P+G +R++ T  LG   +   +  F   YPD
Sbjct: 65  EGLAYYENSLRILHLVEQAGAEARDRRHAPAGTVRLSCTAALGVLHVGAIVFAFQDRYPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D+  +  D AIRL  P+  S+L  R +        AAP YL     PL
Sbjct: 125 ISVDLSLTDERVDLVREGMDLAIRLG-PLADSALRLRAVGRSERRLVAAPAYLAARGRPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H  I   ++               R +  P    L+V+  L+     + G GI
Sbjct: 184 TPEDLVGHEGIRMTNVAGSGTLVLEGPEAGRRAV--PFGGRLRVDHGLAARAAVLAGRGI 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A    ++V D   +  L  ++ D   PS  +            +++   +F+  + R
Sbjct: 242 APAHRWLVADCLADGRLEAVLPDYALPSVPLSLLIVPERAAIARVRLLADFLAAELR 298


>gi|170734982|ref|YP_001774096.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821020|gb|ACA95601.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 307

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 126/298 (42%), Gaps = 12/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  V R+GSF+ AA +L +  +++SR+I   E  +G +L +R  R L  + +
Sbjct: 2   LDLNDLALFVQVVRAGSFSEAARRLRMPANTLSRRIDQFEGHIGTRLLHRSTRKLAPSTE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L    +    ++   + +  +    P+G +R+A    L + +    L EF   +P I
Sbjct: 62  GLALFERYAPALDRIFEIERQHADGQE-PAGTVRVAAMAGLFEVIKLEWLAEFYARHPRI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +LD+   D+  +  D A+R+       S   R++    M   A+P YL+    P +
Sbjct: 121 SIDFLLDDTPSDLIAERIDLALRIGIE-TGGSFRVRRIAPGTMILAASPAYLERRGTPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            +EL  H+ +T      + M    W     R   E  I S   VN    +MQ C+ G GI
Sbjct: 180 PRELADHDCLTVSSRQGRSM----WRLQGPRGTQEISIDSRFSVNDMRVVMQACLAGLGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+P  +     D   L R++           +   Y         + A   F+  K 
Sbjct: 236 ALVPQVLAAAAIDEGKLARVLPAYQRSGAGLGLQLVYTSRPPLPPAVTAVAEFLLEKL 293


>gi|332534665|ref|ZP_08410496.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035877|gb|EGI72359.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 297

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 10/291 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S+  D LR F  + + GSF  A+  L +S S++SR+I  LE  + + L  R A  +TLT 
Sbjct: 4   SYSLDDLRYFCTIVKLGSFKKASINLGMSLSTLSRRIRLLEQALQLTLLNRDAHRVTLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    +++ ++E  +  L +   +P GK+RI+  I +G++ L     EFLL YPD
Sbjct: 64  TGELYYDRYRKLFDEVECIEQALCDEKDQPKGKIRISAPIYMGKHFLSAIFCEFLLQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L   N  IDI  +  D A R+R P    + + R+L   H    A  +Y        
Sbjct: 124 IQLDLRFSNNLIDIEKEGIDIAFRVRNPAID-NWVIRELKLTHNLLCAHQNY--AHHPIT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             ++L++H  IT   L+P  +++     T +     P     L+V+    + Q    G G
Sbjct: 181 HPEQLEEHPKITCVGLVPWQLKN---QQTNEEYCFNPNTHVRLEVDEIQMMKQAVESGVG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           I+ +PDYI     +   L RI+ D  +        Y +  +   +++    
Sbjct: 238 ISYIPDYIALPLIEATKLKRILPDWQSKGQPFSMLYRDRKQVPYRVRLLIE 288


>gi|304409856|ref|ZP_07391475.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307307856|ref|ZP_07587583.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304351265|gb|EFM15664.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306910046|gb|EFN40485.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 304

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 128/294 (43%), Gaps = 10/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+ F  V  S S++  A +  +S S ISR IS LE  +G +LFYR+ R +  TE G  
Sbjct: 2   RALKFFIGVYDSKSYSVVARKEGVSPSMISRVISQLEDSLGQQLFYRNTRAIIPTESGRI 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + EL + +++P G +RI   +  GQ  +   L  FL  YP +Q++
Sbjct: 62  FIEYARSMAEQLNEVRNELLDRTIEPKGLIRINAPVFFGQRHIAPWLAGFLTRYPQVQVE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L   +  ID  +  AD   R+   +  SSL  R L +   H  A+  Y+     P    +
Sbjct: 122 LTQTDDYIDPHVSAADIIFRIG-TLVDSSLHSRILGSQTYHLAASKAYIALHGMPTEPAD 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  + +     +    FN   T    + +P    L  N+  +++   +   GI L P
Sbjct: 181 LKNHQCLVYSGSSGQNRWFFNKNKTT--WLHQPITPILTSNNAETLLIAALNDMGIVLFP 238

Query: 246 DYIVKDN---PNLVRIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D+++ D+     L+ ++ D  +        +   YP +   +  ++A  ++   
Sbjct: 239 DWLIGDSLKNGQLISLLTDCESAIKIDQHYITAIYPNSRTPSLNVRAVIDYFLE 292


>gi|194291656|ref|YP_002007563.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225560|emb|CAQ71506.1| TRANSCRIPTION REGULATOR, HTH lysR family; putative ttuA activator
           [Cupriavidus taiwanensis LMG 19424]
          Length = 307

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 117/274 (42%), Gaps = 6/274 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
             L +S +++S+++  +E  +G+ L  R  R ++LT +G  L      +  +L+  +  L
Sbjct: 29  RDLGISTAAVSKRLGQMEARIGMPLVIRTTRRMSLTPEGEVLLEHARRILGELDDLEQLL 88

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +  +PSG LR+  T+  G+  +   + ++   YP++ +QL L      ++ D  D  +
Sbjct: 89  TSAKSRPSGLLRVNATLGFGRMHVAPVISDYSRRYPEVDVQLQLSADPPPLTEDAFDVCV 148

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + ++ RKL        A+P YL+    P    +L +HN I    G       
Sbjct: 149 RFGEP-PDARIVARKLAPNRRLLVASPGYLRKHGTPQVPADLPRHNCIGIRQGSDAYGVW 207

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIM 259
                     R         L  N     + + + G GI L  ++ V     +  LV+++
Sbjct: 208 RLTAIRGARPRTEAVHVRGNLTTNDGEIAVNWALEGHGIVLRAEWDVDRYLRSGRLVQVL 267

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               TP   +Y  Y +  + + +++ F  ++  K
Sbjct: 268 PQYATPEANIYAVYQQRHQLSSRIRLFVEYLAEK 301


>gi|134292663|ref|YP_001116399.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135820|gb|ABO56934.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 348

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 138/300 (46%), Gaps = 8/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF  VAR GSFT AAE L +S +S S  +  LE  +G  L  R  R + LT
Sbjct: 1   MDRTLHAMSVFSQVARLGSFTAAAEMLGISAASASTLVRRLEEHLGATLLQRSTRCVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +       +  ++E  Q +L  +     G+L +    ++  ++L   L  F   +P
Sbjct: 61  TEGEQYQEHCQRILGEIELMQQQLSGAGKIARGRLAVDLDQEVAHSVL-PFLPVFRANHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ +++ +      +  +  DCA+ + + +  SSL  R++   H    A+P YLK    P
Sbjct: 120 EVGLRVDVGGDADGLIANGVDCAVVVGQ-LADSSLRSRRVGHFHAVTVASPDYLKARGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
           +    L  H++I +       + +F +  TVD      +++  + VN   S ++Y V G 
Sbjct: 179 VDPDSLHCHDVIHYTPRRFGPVREFRY--TVDGAETRLKLAERISVNDVRSAVRYAVEGV 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA + + +V +      LV I+ +       +   YP+  +    ++AF +++  + RD
Sbjct: 237 GIAQVSERMVAEELARGTLVSILGEYGPAPLPISVLYPDRRQVPMSIRAFIDWMQTQLRD 296


>gi|298717559|ref|YP_003730201.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361748|gb|ADI78529.1| Uncharacterized HTH-type transcriptional regulator yhjC [Pantoea
           vagans C9-1]
          Length = 298

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 122/282 (43%), Gaps = 9/282 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS + A+  L +S+  +SR +  +E   G +L +R +R LTLT  G  + + 
Sbjct: 9   VFNRICELGSLSAASRALGISRPMVSRYLEEMEKWAGTRLLHRSSRRLTLTPAGEAILQK 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           T ++    +  Q E  +    P+G LRIA       +L+   + +FL  YP ++I+L ++
Sbjct: 69  TRQLALLSDAIQQETTQ--GVPAGTLRIACAHFTALHLVGPVVPDFLARYPALRIELDIN 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ + +  +  D AIR+    +  + I R+L   H    A+P YL+    P +  +L +H
Sbjct: 127 NQPVSLISERIDLAIRITDAPEPGA-IARRLGECHSVLCASPGYLQKRGIPQTPGDLAQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + +        + +++ A     I               +    +   GIA++P+   
Sbjct: 186 NCLYYSRF---AGQSWHFTAADGGKIAVAVKGNFSAGISSLLCDAAIADCGIAMVPELEA 242

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +       LV ++ D       ++  Y      +  L+   +
Sbjct: 243 RHALKAGKLVELLPDYEPQRIGIWGLYLSREHQSAALRLMLD 284


>gi|270262500|ref|ZP_06190771.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043184|gb|EFA16277.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 299

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 10/291 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+L +F  V + GS   A  +L  S  +I+R I+ LE   G +L  R  R L  TE
Sbjct: 1   MDRLDELAIFVAVIQHGSLAAAGRKLRRSAPAITRAIASLEQRFGTRLVERTTRRLAPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      + H  ++  ++  +S  + SG LR+ + +  G+  +   +  FL  YP 
Sbjct: 61  AGLRLAERARLLLHDYDSAVLDTADS--QLSGMLRVTSPVQFGRKHVAPLVMAFLDRYPQ 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+++L+++++D+  +  D A+R+    Q SS + R+L  +     A+P YL    +P 
Sbjct: 119 MQIEMVLNDRNLDLIDEGLDVAVRIGHQ-QDSSRVARRLGQVSRVTVASPAYLARRGKPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ I            F      +R    PR   L +N   + +     G GI
Sbjct: 178 HPAQLTDHDTIVGTQRASLREWRFGPQENGERVRLTPR---LLINEVETQLLAVRAGKGI 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           A L  Y V D+     LVR++         V        +   K++ F ++
Sbjct: 235 ARLLSYQVADDLAAGTLVRLLPAYEPLPMPVQLVAQNVQRMPLKVRTFWDY 285


>gi|49084358|gb|AAT51195.1| PA1738 [synthetic construct]
          Length = 305

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 113/291 (38%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +AR  SF  AA  L ++  ++S  +  LET++GI+L  R  R ++ TE G
Sbjct: 5   DLAGLAAFVAIARERSFRRAAATLGVTPPTLSHTLRELETQLGIRLLNRTTRNVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       +  +      L      P G +RI    +    +L     E    YP I 
Sbjct: 65  EHLLAHLDPAFEDIAAALDSLNRFRETPHGLVRINAPRNAIGLVLAPRFGELARDYPGIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ D    +I     D  IRL + +Q      R    + +   A P Y +    P S 
Sbjct: 125 LEVVADEGFANIVEAGFDAGIRLGEDLQHGMRAVRVGPDLRLAIVATPAYFRRQGRPGSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +EL  H  I +  +     E + W  +   + +       L ++    ++Q  +   GIA
Sbjct: 185 EELLGHRCIGWRKV--SSGELYKWQFSKGTKALSVAMSGPLVLDDPRLMLQAALADVGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  V ++     L R++ D   P    +  YP    +   L A  N +
Sbjct: 243 FAIEEEVAEHLAAGRLERVLADWCAPFPGFHLYYPNRRNHPAALSAVINLL 293


>gi|330821761|ref|YP_004350623.1| transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373756|gb|AEA65111.1| transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 303

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 127/295 (43%), Gaps = 11/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   + +F  V RSGSF  AA  L L+++ +S  +  LE+ +G+ L  R  R  +LT  G
Sbjct: 10  DLRGMAIFATVVRSGSFAAAARSLGLTRAVVSHHVRVLESRLGVPLAQRSTRSFSLTPAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +  +       ++    +P G++R+  +   G   +   L  F   YP ++
Sbjct: 70  QAFRVHCERLLDEAVDGIRSMELLRDEPRGEVRLTCSHHFGTKRILPALVGFRRRYPAVR 129

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + + + ++DI     + A+R   P+  S+L  R L+       AAP YL+    P S 
Sbjct: 130 LHVAMSDANVDIVQQGVELAVRAG-PLADSALHARPLLREATMLCAAPAYLRRHGAPASA 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +        +    +      +  P    +  +S  S + + + G GIA 
Sbjct: 189 DDLVAHRWVVYPP-----GQRATRVRVAGHDVDVPVQGDVVTDSAASRLAFVLAGDGIAR 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP Y       +  LVR++ +V T    ++  + + +  + +L   R+F+   AR
Sbjct: 244 LPAYDAASLIASGELVRVLPEVQTAPLEIFLVHSKRIGPSARL--LRDFLLETAR 296


>gi|261342230|ref|ZP_05970088.1| glycine cleavage system transcriptional activator [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315565|gb|EFC54503.1| glycine cleavage system transcriptional activator [Enterobacter
           cancerogenus ATCC 35316]
          Length = 305

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 130/298 (43%), Gaps = 17/298 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   E++ +L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYFQDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIQWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   +  
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPMLLTGEKALKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAKHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA +
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILSKAAN 294


>gi|170736195|ref|YP_001777455.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818383|gb|ACA92965.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 334

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+F  +    SFT AA+ L +S+++ +R +  LE  +G+ L  R  R L  T
Sbjct: 1   MDNPIRAMRIFTRIVEMNSFTRAAQALGISRATATRTVQELEAALGMPLLVRTTRALRPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   +R    +   ++  +  ++ +++ PSG LR+     +   ++   L EF   +P
Sbjct: 61  PEGDAYYRRCVSITADVDELEASIRGAALHPSGPLRVELPASVASTIVLPALGEFHARHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L +  +  D   D  DC+IRL   +  SSL+ R+L ++     A+P YL     P
Sbjct: 121 DLELTLAVAGRAGDRIGDAIDCSIRLGA-LPDSSLVARRLGSLERVTCASPAYLDRFGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            + ++L  H  +    +  +   +  ++  VD  + + R+   + V+   + +   V G 
Sbjct: 180 RTPEDLGAHRAVGGSHVFGQRSAELEFV--VDDAVRKVRLDGIVSVDDEQAYLACGVHGL 237

Query: 240 GIALLPDYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ + P  +      D   L  ++      +  V   Y +    +  ++AF ++I  +
Sbjct: 238 GL-IQPTRVAAQPLIDAGRLREVLAGWQPDALAVSAVYVKRPHVSPGVRAFVDWIAER 294


>gi|126454788|ref|YP_001064744.1| DNA-binding transcriptional activator GcvA [Burkholderia
           pseudomallei 1106a]
 gi|167844091|ref|ZP_02469599.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|242317884|ref|ZP_04816900.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|126228430|gb|ABN91970.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|242141123|gb|EES27525.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 321

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G 
Sbjct: 9   LNALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGG 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L     E++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 69  RYAQQVRAALALLADATREVRASERDK--RLVVSTLPSFAARWITPRIGPFIERHPEIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 127 ELRASDSLVDFARDDVDVAIRFGHGV-YPGLHVEPLLDETFFPVCAPT-LNGGMLPETPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 185 DLVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         +VR+ +      +  +F  P +L  T +++A RN++  +   ++
Sbjct: 240 RRSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRNWLLDEIARFR 296


>gi|221065093|ref|ZP_03541198.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710116|gb|EED65484.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 314

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 137/302 (45%), Gaps = 10/302 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +A  GSF  A   L    S +S+++  LE  +G++L  R  R L  T +G +
Sbjct: 10  DELATLLALAEQGSFAAAGRSLGRHPSVLSKRMQALERRLGVRLVERTTRQLHFTSEGLR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    S+  H +   + E  + + +  G+LR++    +G+  +   L EF L YP++ ++
Sbjct: 70  LVEKVSQASHLIREAEQEAAQGAQETRGRLRLSIPASMGRRWISPMLAEFSLAYPEVVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +DI  +  D AIR+   +  S L+  +L   +    A+  YL+    P   ++
Sbjct: 130 VEYSDRIVDIVGERFDAAIRIGH-LSDSRLVAARLCDQYRLLCASARYLERHEAPRRPED 188

Query: 186 LDKHNLITFGDLI--PKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           L +HN + +  L+  P+            R +   R+S  +  N   +++   + G GI 
Sbjct: 189 LARHNCLGYTGLLDFPQWRLVRPAGRRSARVVESVRVSGSMLSNDNEALLHAALKGVGII 248

Query: 243 LLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFL--KARD 296
              D+ +  +     LVRI+       +  +Y   P    NTG +KAF+ ++     A  
Sbjct: 249 AGSDWHLVPSIHAGELVRILPQWTLGEAGGIYLVRPSGQYNTGAMKAFKPWMTEAFAAAP 308

Query: 297 WK 298
           W+
Sbjct: 309 WR 310


>gi|167568591|ref|ZP_02361465.1| glycine cleavage system transcriptional activator [Burkholderia
           oklahomensis C6786]
          Length = 312

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 132/296 (44%), Gaps = 12/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + LTLT+ G 
Sbjct: 2   LNALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLTLTDAGG 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        +     +++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 62  RYAQQVRAALTLIADATRDIRASDRDK--RLIVSTLPSFAARWITPRIGPFIERHPEIDL 119

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 120 ELRASDALVDFARDDVDVAIRFGYGV-YPGLYVEPLLDETFFPVCAPT-LNGGVLPETPA 177

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 178 DLARYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 232

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              +         +VR+ +      +  +F  P +L  T +++AFR ++  +   +
Sbjct: 233 RRSLAVPELAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLLEEIARF 288


>gi|126452574|ref|YP_001067444.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167739928|ref|ZP_02412702.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167847043|ref|ZP_02472551.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|242316054|ref|ZP_04815070.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254194855|ref|ZP_04901285.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|126226216|gb|ABN89756.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|169651604|gb|EDS84297.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|242139293|gb|EES25695.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 326

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 123/287 (42%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  ++ +  +P G LR+A +  L    +   +  +   YP +++QL 
Sbjct: 67  DGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L    +D+     D  +     +  + +LI   L+   +   AAP Y++    P    +L
Sbjct: 127 LTEGALDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAPHRPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I       +    + ++                VNS   +    + G+GI++LP+
Sbjct: 187 VRHAYIALP--ADQHASTWRFVDPDHFTHVVSLQPVYTVNSASMVRAATLAGTGISVLPE 244

Query: 247 YIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
             + D   +  LVRI+ D     P   +   YP       + ++F  
Sbjct: 245 SYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVE 291


>gi|322614930|gb|EFY11855.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322619370|gb|EFY16250.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623182|gb|EFY20024.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322628472|gb|EFY25260.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634880|gb|EFY31611.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638556|gb|EFY35251.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640909|gb|EFY37557.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322645362|gb|EFY41890.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651755|gb|EFY48127.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322654347|gb|EFY50669.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661188|gb|EFY57414.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322662685|gb|EFY58892.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322667705|gb|EFY63865.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671883|gb|EFY68004.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322677072|gb|EFY73136.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322680266|gb|EFY76305.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685305|gb|EFY81301.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323194151|gb|EFZ79349.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323199365|gb|EFZ84459.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203499|gb|EFZ88523.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205882|gb|EFZ90845.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323217209|gb|EGA01930.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323220778|gb|EGA05218.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225260|gb|EGA09498.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323232071|gb|EGA16178.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234598|gb|EGA18685.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238051|gb|EGA22110.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323243348|gb|EGA27367.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323253656|gb|EGA37483.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323259019|gb|EGA42668.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323260443|gb|EGA44056.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323266469|gb|EGA49956.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271193|gb|EGA54620.1| regulatory protein LysR:LysR, substrate-binding [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 299

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 134/292 (45%), Gaps = 10/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP 
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLRQYP- 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            ++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 120 -ELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 179 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGKDYAMRVQETLVVDDTDAYIQAGIQGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y+V     +  LV  M++  +    +   YP+       ++AF ++
Sbjct: 237 LIRVASYLVAPYLHSGALVTCMDNH-SYDLPLALVYPQNRFLPPTVRAFYDW 287


>gi|299069535|emb|CBJ40807.1| putative transcription regulator protein, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 340

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 117/301 (38%), Gaps = 8/301 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +    +  F      GS   AA    ++  + S+ ++ LE  +G++L +R  R L L
Sbjct: 1   MPINELRAIATFAKAVELGSIRRAAAAQGVTPQAASQALAQLEEHLGVRLLHRTTRSLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G +           L+    + +ES  + +G LRI         +L   +  F   Y
Sbjct: 61  TDEGQRFLEAAQPALAALDRALSQARESKDEIAGPLRIVGPKSSFAPILMPVIDAFCRQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +Q  + LD+   +  +D  D   R+        +I R+L+ + +   AAP YL+    
Sbjct: 121 PQVQPDVQLDDGKSNWVLDRVDVGFRIGTS-PDEGVIARRLLPVQLMICAAPSYLEQHGA 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P S+ EL  H    F    P   +   W   +D  I    +S     N     +Q  + G
Sbjct: 180 PKSLDELATHRCSAFRH--PATDQVLPWYLNIDGEIVHRHVSPTFSTNDTELELQAVLAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             I  + +     +     LV ++   ++    V+  Y        +++AF +    +  
Sbjct: 238 QVIGQIANLAAAAHIRAGRLVPLLLQHMSDHIGVHLYYGSRTAQPRRVRAFIDLAIQQLL 297

Query: 296 D 296
           D
Sbjct: 298 D 298


>gi|104781820|ref|YP_608318.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110807|emb|CAK15520.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 300

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 131/293 (44%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L  F  V  +GSFT AAE+L ++++ +S+Q++ LE E    L  R  R +  TE G
Sbjct: 7   NLNRLAYFTAVVETGSFTAAAERLGITKAVVSQQVARLEREFRTTLLVRSTRRVRTTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   + +  + E    EL  S+ +P+G LR+    D G  ++   + EF   YP  +
Sbjct: 67  QSFYYRCASILKEAEEAFEELSASASEPTGTLRLTAPFDYGIGVVVPVITEFSQRYPQCK 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   ++ +D+     D +IR+   I    L  R++        AAP +          
Sbjct: 127 VEVHFSDQTLDLGTHDLDLSIRVGW-ITEQHLQARRIGDFEQRLVAAPQWRARMDALQHP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +  L+   +   +    + +       +     S + +N+ L++ +  + G+G+++
Sbjct: 186 TELAELPLV--ANTALREPTRWAFARGESERVVVEMKSSVSLNATLAVREATLQGAGLSV 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LPDY+   +     L+ ++     P   ++  +P A      ++ F   +  K
Sbjct: 244 LPDYVAAPDLEAGRLIEVLPGWALPRGEIHVVFPTARFRPVNVRVFTELLARK 296


>gi|15803330|ref|NP_289363.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H7 EDL933]
 gi|15832922|ref|NP_311695.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H7 str. Sakai]
 gi|16130715|ref|NP_417288.1| DNA-binding transcriptional dual regulator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|26249213|ref|NP_755253.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           CFT073]
 gi|74313379|ref|YP_311798.1| DNA-binding transcriptional activator GcvA [Shigella sonnei Ss046]
 gi|89109594|ref|AP_003374.1| DNA-binding transcriptional dual regulator [Escherichia coli str.
           K-12 substr. W3110]
 gi|91212177|ref|YP_542163.1| DNA-binding transcriptional activator GcvA [Escherichia coli UTI89]
 gi|110642949|ref|YP_670679.1| DNA-binding transcriptional activator GcvA [Escherichia coli 536]
 gi|117625036|ref|YP_854024.1| DNA-binding transcriptional activator GcvA [Escherichia coli APEC
           O1]
 gi|157155797|ref|YP_001464132.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           E24377A]
 gi|157162262|ref|YP_001459580.1| DNA-binding transcriptional activator GcvA [Escherichia coli HS]
 gi|168751025|ref|ZP_02776047.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758193|ref|ZP_02783200.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4401]
 gi|168766781|ref|ZP_02791788.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4486]
 gi|168778802|ref|ZP_02803809.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4076]
 gi|168788072|ref|ZP_02813079.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC869]
 gi|168801672|ref|ZP_02826679.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC508]
 gi|170018946|ref|YP_001723900.1| DNA-binding transcriptional activator GcvA [Escherichia coli ATCC
           8739]
 gi|170082379|ref|YP_001731699.1| DNA-binding transcriptional dual regulator [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170681756|ref|YP_001744973.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           SMS-3-5]
 gi|187733581|ref|YP_001881453.1| DNA-binding transcriptional activator GcvA [Shigella boydii CDC
           3083-94]
 gi|188494481|ref|ZP_03001751.1| glycine cleavage system transcriptional activator [Escherichia coli
           53638]
 gi|193065117|ref|ZP_03046191.1| glycine cleavage system transcriptional activator [Escherichia coli
           E22]
 gi|195936412|ref|ZP_03081794.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H7 str. EC4024]
 gi|208812725|ref|ZP_03254054.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4045]
 gi|209400092|ref|YP_002272274.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4115]
 gi|209920259|ref|YP_002294343.1| DNA-binding transcriptional activator GcvA [Escherichia coli SE11]
 gi|215488125|ref|YP_002330556.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217327004|ref|ZP_03443087.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. TW14588]
 gi|218555359|ref|YP_002388272.1| DNA-binding transcriptional activator GcvA [Escherichia coli IAI1]
 gi|218559796|ref|YP_002392709.1| DNA-binding transcriptional activator GcvA [Escherichia coli S88]
 gi|218690931|ref|YP_002399143.1| DNA-binding transcriptional activator GcvA [Escherichia coli ED1a]
 gi|218696407|ref|YP_002404074.1| DNA-binding transcriptional activator GcvA [Escherichia coli 55989]
 gi|218701525|ref|YP_002409154.1| DNA-binding transcriptional activator GcvA [Escherichia coli IAI39]
 gi|218706304|ref|YP_002413823.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           UMN026]
 gi|227888350|ref|ZP_04006155.1| DNA-binding transcriptional activator GcvA [Escherichia coli 83972]
 gi|237706560|ref|ZP_04537041.1| glycine cleavage system transcriptional activator [Escherichia sp.
           3_2_53FAA]
 gi|238901946|ref|YP_002927742.1| DNA-binding transcriptional dual regulator [Escherichia coli
           BW2952]
 gi|253772335|ref|YP_003035166.1| GcvA family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037862|ref|ZP_04871920.1| glycine cleavage system transcriptional activator [Escherichia sp.
           1_1_43]
 gi|254162739|ref|YP_003045847.1| DNA-binding transcriptional activator GcvA [Escherichia coli B str.
           REL606]
 gi|254794749|ref|YP_003079586.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H7 str. TW14359]
 gi|256019403|ref|ZP_05433268.1| DNA-binding transcriptional activator GcvA [Shigella sp. D9]
 gi|256024688|ref|ZP_05438553.1| DNA-binding transcriptional activator GcvA [Escherichia sp.
           4_1_40B]
 gi|260845454|ref|YP_003223232.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O103:H2 str. 12009]
 gi|260856918|ref|YP_003230809.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O26:H11 str. 11368]
 gi|260869486|ref|YP_003235888.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O111:H- str. 11128]
 gi|261226109|ref|ZP_05940390.1| DNA-binding transcriptional dual regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256636|ref|ZP_05949169.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284137|ref|YP_003500955.1| Glycine cleavage system transcriptional activator [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406300|ref|ZP_06650226.1| glycine cleavage system transcriptional activator GcvA [Escherichia
           coli FVEC1412]
 gi|293412156|ref|ZP_06654879.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293449134|ref|ZP_06663555.1| LysR family transcriptional regulator [Escherichia coli B088]
 gi|298382036|ref|ZP_06991633.1| glycine cleavage system transcriptional activator [Escherichia coli
           FVEC1302]
 gi|300815771|ref|ZP_07095995.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300820599|ref|ZP_07100750.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300898128|ref|ZP_07116494.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300920334|ref|ZP_07136772.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300923212|ref|ZP_07139267.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300931274|ref|ZP_07146614.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300936272|ref|ZP_07151205.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300950544|ref|ZP_07164451.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300976444|ref|ZP_07173429.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|301027521|ref|ZP_07190858.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|301304580|ref|ZP_07210690.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|301325758|ref|ZP_07219210.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|301645222|ref|ZP_07245175.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|306812311|ref|ZP_07446509.1| DNA-binding transcriptional activator GcvA [Escherichia coli NC101]
 gi|307139495|ref|ZP_07498851.1| DNA-binding transcriptional activator GcvA [Escherichia coli H736]
 gi|307312763|ref|ZP_07592393.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|309795279|ref|ZP_07689698.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|312964920|ref|ZP_07779160.1| glycine cleavage system transcriptional activator [Escherichia coli
           2362-75]
 gi|312972972|ref|ZP_07787145.1| glycine cleavage system transcriptional activator [Escherichia coli
           1827-70]
 gi|331643495|ref|ZP_08344626.1| glycine cleavage system transcriptional activator [Escherichia coli
           H736]
 gi|331648537|ref|ZP_08349625.1| glycine cleavage system transcriptional activator [Escherichia coli
           M605]
 gi|331654293|ref|ZP_08355293.1| glycine cleavage system transcriptional activator [Escherichia coli
           M718]
 gi|331658923|ref|ZP_08359865.1| glycine cleavage system transcriptional activator [Escherichia coli
           TA206]
 gi|331664370|ref|ZP_08365276.1| glycine cleavage system transcriptional activator [Escherichia coli
           TA143]
 gi|331674299|ref|ZP_08375059.1| glycine cleavage system transcriptional activator [Escherichia coli
           TA280]
 gi|331678789|ref|ZP_08379463.1| glycine cleavage system transcriptional activator [Escherichia coli
           H591]
 gi|331684431|ref|ZP_08385023.1| glycine cleavage system transcriptional activator [Escherichia coli
           H299]
 gi|332280521|ref|ZP_08392934.1| glycine cleavage system transcriptional activator [Shigella sp. D9]
 gi|71159365|sp|P0A9F8|GCVA_ECO57 RecName: Full=Glycine cleavage system transcriptional activator;
           AltName: Full=Gcv operon activator
 gi|71159366|sp|P0A9F7|GCVA_ECOL6 RecName: Full=Glycine cleavage system transcriptional activator;
           AltName: Full=Gcv operon activator
 gi|71159367|sp|P0A9F6|GCVA_ECOLI RecName: Full=Glycine cleavage system transcriptional activator;
           AltName: Full=Gcv operon activator
 gi|12517287|gb|AAG57922.1|AE005508_13 positive regulator of gcv operon [Escherichia coli O157:H7 str.
           EDL933]
 gi|26109620|gb|AAN81823.1|AE016765_225 Glycine cleavage system transcriptional activator [Escherichia coli
           CFT073]
 gi|312766|emb|CAA51813.1| glycine cleavage activator protein [Escherichia coli]
 gi|523331|gb|AAC13742.1| GcvA [Escherichia coli]
 gi|882703|gb|AAB40458.1| CG Site No. 28676 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789173|gb|AAC75850.1| DNA-binding transcriptional dual regulator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|13363140|dbj|BAB37091.1| positive regulator of gcv operon [Escherichia coli O157:H7 str.
           Sakai]
 gi|73856856|gb|AAZ89563.1| positive regulator of gcv operon [Shigella sonnei Ss046]
 gi|85675627|dbj|BAE76880.1| DNA-binding transcriptional dual regulator [Escherichia coli str.
           K12 substr. W3110]
 gi|91073751|gb|ABE08632.1| positive regulator of gcv operon [Escherichia coli UTI89]
 gi|110344541|gb|ABG70778.1| LysR family regulator of gcv operon [Escherichia coli 536]
 gi|115514160|gb|ABJ02235.1| positive regulator of gcv operon [Escherichia coli APEC O1]
 gi|157067942|gb|ABV07197.1| glycine cleavage system transcriptional activator [Escherichia coli
           HS]
 gi|157077827|gb|ABV17535.1| glycine cleavage system transcriptional activator [Escherichia coli
           E24377A]
 gi|169753874|gb|ACA76573.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|169890214|gb|ACB03921.1| DNA-binding transcriptional dual regulator [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170519474|gb|ACB17652.1| glycine cleavage system transcriptional activator [Escherichia coli
           SMS-3-5]
 gi|187430573|gb|ACD09847.1| glycine cleavage system transcriptional activator [Shigella boydii
           CDC 3083-94]
 gi|188014879|gb|EDU53001.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4113]
 gi|188489680|gb|EDU64783.1| glycine cleavage system transcriptional activator [Escherichia coli
           53638]
 gi|189003513|gb|EDU72499.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354926|gb|EDU73345.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363687|gb|EDU82106.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4486]
 gi|189372093|gb|EDU90509.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC869]
 gi|189376194|gb|EDU94610.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC508]
 gi|192927248|gb|EDV81868.1| glycine cleavage system transcriptional activator [Escherichia coli
           E22]
 gi|208734002|gb|EDZ82689.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4045]
 gi|209161492|gb|ACI38925.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4115]
 gi|209761208|gb|ACI78916.1| positive regulator of gcv operon [Escherichia coli]
 gi|209761210|gb|ACI78917.1| positive regulator of gcv operon [Escherichia coli]
 gi|209761212|gb|ACI78918.1| positive regulator of gcv operon [Escherichia coli]
 gi|209761214|gb|ACI78919.1| positive regulator of gcv operon [Escherichia coli]
 gi|209761216|gb|ACI78920.1| positive regulator of gcv operon [Escherichia coli]
 gi|209913518|dbj|BAG78592.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|215266197|emb|CAS10623.1| DNA-binding transcriptional dual regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217319371|gb|EEC27796.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. TW14588]
 gi|218353139|emb|CAU98987.1| DNA-binding transcriptional dual regulator [Escherichia coli 55989]
 gi|218362127|emb|CAQ99736.1| DNA-binding transcriptional dual regulator [Escherichia coli IAI1]
 gi|218366565|emb|CAR04318.1| DNA-binding transcriptional dual regulator [Escherichia coli S88]
 gi|218371511|emb|CAR19349.1| DNA-binding transcriptional dual regulator [Escherichia coli IAI39]
 gi|218428495|emb|CAR09421.2| DNA-binding transcriptional dual regulator [Escherichia coli ED1a]
 gi|218433401|emb|CAR14303.1| DNA-binding transcriptional dual regulator [Escherichia coli
           UMN026]
 gi|222034499|emb|CAP77241.1| glycine cleavage system transcriptional activator [Escherichia coli
           LF82]
 gi|226839486|gb|EEH71507.1| glycine cleavage system transcriptional activator [Escherichia sp.
           1_1_43]
 gi|226899600|gb|EEH85859.1| glycine cleavage system transcriptional activator [Escherichia sp.
           3_2_53FAA]
 gi|227834619|gb|EEJ45085.1| DNA-binding transcriptional activator GcvA [Escherichia coli 83972]
 gi|238860919|gb|ACR62917.1| DNA-binding transcriptional dual regulator [Escherichia coli
           BW2952]
 gi|242378360|emb|CAQ33137.1| GcvA transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253323379|gb|ACT27981.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974640|gb|ACT40311.1| DNA-binding transcriptional dual regulator [Escherichia coli B str.
           REL606]
 gi|253978805|gb|ACT44475.1| DNA-binding transcriptional dual regulator [Escherichia coli
           BL21(DE3)]
 gi|254594149|gb|ACT73510.1| DNA-binding transcriptional dual regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|257755567|dbj|BAI27069.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O26:H11 str. 11368]
 gi|257760601|dbj|BAI32098.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O103:H2 str. 12009]
 gi|257765842|dbj|BAI37337.1| DNA-binding transcriptional dual regulator GcvA [Escherichia coli
           O111:H- str. 11128]
 gi|260448141|gb|ACX38563.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|281179809|dbj|BAI56139.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|284922747|emb|CBG35835.1| glycine cleavage system transcriptional activator [Escherichia coli
           042]
 gi|290764010|gb|ADD57971.1| Glycine cleavage system transcriptional activator [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322224|gb|EFE61653.1| LysR family transcriptional regulator [Escherichia coli B088]
 gi|291426306|gb|EFE99338.1| glycine cleavage system transcriptional activator GcvA [Escherichia
           coli FVEC1412]
 gi|291468927|gb|EFF11418.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294492655|gb|ADE91411.1| glycine cleavage system transcriptional activator [Escherichia coli
           IHE3034]
 gi|298277176|gb|EFI18692.1| glycine cleavage system transcriptional activator [Escherichia coli
           FVEC1302]
 gi|300308525|gb|EFJ63045.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|300358186|gb|EFJ74056.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300395029|gb|EFJ78567.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|300412659|gb|EFJ95969.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|300420521|gb|EFK03832.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300450112|gb|EFK13732.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300458597|gb|EFK22090.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300460928|gb|EFK24421.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300526863|gb|EFK47932.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300531700|gb|EFK52762.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300840184|gb|EFK67944.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|300847457|gb|EFK75217.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|301076492|gb|EFK91298.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|305854349|gb|EFM54787.1| DNA-binding transcriptional activator GcvA [Escherichia coli NC101]
 gi|306907198|gb|EFN37704.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|307554780|gb|ADN47555.1| positive regulator of gcv operon [Escherichia coli ABU 83972]
 gi|307625622|gb|ADN69926.1| DNA-binding transcriptional activator GcvA [Escherichia coli UM146]
 gi|308121250|gb|EFO58512.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|309703166|emb|CBJ02500.1| glycine cleavage system transcriptional activator [Escherichia coli
           ETEC H10407]
 gi|310332914|gb|EFQ00128.1| glycine cleavage system transcriptional activator [Escherichia coli
           1827-70]
 gi|312290476|gb|EFR18356.1| glycine cleavage system transcriptional activator [Escherichia coli
           2362-75]
 gi|312947336|gb|ADR28163.1| DNA-binding transcriptional activator GcvA [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315062089|gb|ADT76416.1| DNA-binding transcriptional dual regulator [Escherichia coli W]
 gi|315137415|dbj|BAJ44574.1| glycine cleavage system transcriptional activator [Escherichia coli
           DH1]
 gi|315256671|gb|EFU36639.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|315289337|gb|EFU48732.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|315293760|gb|EFU53112.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
 gi|315298834|gb|EFU58088.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
 gi|315615196|gb|EFU95833.1| glycine cleavage system transcriptional activator [Escherichia coli
           3431]
 gi|320172920|gb|EFW48150.1| Glycine cleavage system transcriptional activator GcvA [Shigella
           dysenteriae CDC 74-1112]
 gi|320182424|gb|EFW57321.1| Glycine cleavage system transcriptional activator GcvA [Shigella
           boydii ATCC 9905]
 gi|320185278|gb|EFW60053.1| Glycine cleavage system transcriptional activator GcvA [Shigella
           flexneri CDC 796-83]
 gi|320189144|gb|EFW63803.1| Glycine cleavage system transcriptional activator GcvA [Escherichia
           coli O157:H7 str. EC1212]
 gi|320194950|gb|EFW69579.1| Glycine cleavage system transcriptional activator GcvA [Escherichia
           coli WV_060327]
 gi|320202455|gb|EFW77025.1| Glycine cleavage system transcriptional activator GcvA [Escherichia
           coli EC4100B]
 gi|320640458|gb|EFX09997.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H7 str. G5101]
 gi|320645704|gb|EFX14689.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H- str. 493-89]
 gi|320651004|gb|EFX19444.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H- str. H 2687]
 gi|320656500|gb|EFX24396.1| DNA-binding transcriptional activator GcvA [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662396|gb|EFX29793.1| DNA-binding transcriptional activator GcvA [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667094|gb|EFX34057.1| DNA-binding transcriptional activator GcvA [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154855|gb|EFZ41048.1| glycine cleavage system transcriptional activator [Escherichia coli
           EPECa14]
 gi|323167852|gb|EFZ53543.1| glycine cleavage system transcriptional activator [Shigella sonnei
           53G]
 gi|323172887|gb|EFZ58518.1| glycine cleavage system transcriptional activator [Escherichia coli
           LT-68]
 gi|323180241|gb|EFZ65793.1| glycine cleavage system transcriptional activator [Escherichia coli
           1180]
 gi|323183350|gb|EFZ68747.1| glycine cleavage system transcriptional activator [Escherichia coli
           1357]
 gi|323188773|gb|EFZ74058.1| glycine cleavage system transcriptional activator [Escherichia coli
           RN587/1]
 gi|323377328|gb|ADX49596.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323935830|gb|EGB32133.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1520]
 gi|323941510|gb|EGB37692.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|323946464|gb|EGB42490.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|323950975|gb|EGB46851.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323957179|gb|EGB52903.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
 gi|323960670|gb|EGB56294.1| LysR substrate binding domain-containing protein [Escherichia coli
           H489]
 gi|324015373|gb|EGB84592.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
 gi|324016335|gb|EGB85554.1| LysR substrate binding domain protein [Escherichia coli MS 117-3]
 gi|324119850|gb|EGC13729.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
 gi|326339117|gb|EGD62932.1| Glycine cleavage system transcriptional activator GcvA [Escherichia
           coli O157:H7 str. 1044]
 gi|326343001|gb|EGD66769.1| Glycine cleavage system transcriptional activator GcvA [Escherichia
           coli O157:H7 str. 1125]
 gi|330908838|gb|EGH37352.1| glycine cleavage system transcriptional activator GcvA [Escherichia
           coli AA86]
 gi|331036966|gb|EGI09190.1| glycine cleavage system transcriptional activator [Escherichia coli
           H736]
 gi|331042284|gb|EGI14426.1| glycine cleavage system transcriptional activator [Escherichia coli
           M605]
 gi|331047675|gb|EGI19752.1| glycine cleavage system transcriptional activator [Escherichia coli
           M718]
 gi|331053505|gb|EGI25534.1| glycine cleavage system transcriptional activator [Escherichia coli
           TA206]
 gi|331058301|gb|EGI30282.1| glycine cleavage system transcriptional activator [Escherichia coli
           TA143]
 gi|331068393|gb|EGI39788.1| glycine cleavage system transcriptional activator [Escherichia coli
           TA280]
 gi|331073619|gb|EGI44940.1| glycine cleavage system transcriptional activator [Escherichia coli
           H591]
 gi|331078046|gb|EGI49252.1| glycine cleavage system transcriptional activator [Escherichia coli
           H299]
 gi|332087525|gb|EGI92653.1| glycine cleavage system transcriptional activator [Shigella boydii
           5216-82]
 gi|332102873|gb|EGJ06219.1| glycine cleavage system transcriptional activator [Shigella sp. D9]
 gi|332344701|gb|AEE58035.1| glycine cleavage system transcriptional activator protein
           [Escherichia coli UMNK88]
 gi|332999565|gb|EGK19150.1| glycine cleavage system transcriptional activator [Shigella
           flexneri VA-6]
 gi|333000949|gb|EGK20519.1| glycine cleavage system transcriptional activator [Shigella
           flexneri K-272]
 gi|333015549|gb|EGK34888.1| glycine cleavage system transcriptional activator [Shigella
           flexneri K-227]
          Length = 305

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAKHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|308048909|ref|YP_003912475.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307631099|gb|ADN75401.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 296

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 133/296 (44%), Gaps = 11/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L++F  V   GSF+ AAE L+L ++++SR+I  LE  +G  LF R  R L+LT  
Sbjct: 1   MRTDDLKLFMTVVDLGSFSAAAEALNLPRANVSRRIGELEKRLGSTLFSRTTRKLSLTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++    +   L+     ++  S  P GK+++    +    +L   L++F+  YP I
Sbjct: 61  GQELYQRFETLMPMLDAALDSVRSQSRHPVGKIKLGLLPEAEL-ILHPLLQQFMERYPQI 119

Query: 123 QIQLILD-NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +++ +  N   D+     D  +     +  SS + R L       YA+P YL     P 
Sbjct: 120 SLEVTVSANGYQDLIQLGLDLCLHAG-VLADSSFVARSLGRFGRGLYASPDYLARHGHPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L +H L+ F    P   ++ +W          P  + L  NS   + +  V G+GI
Sbjct: 179 CLEQLAEHRLLGF--RWPDGTQERHWQFE---QATVPVEATLLSNSMTYLRRATVEGAGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + LP+     +     LV ++    +P   V+  Y + +      +   +++  + 
Sbjct: 234 SHLPELQAVQHVLSGELVPLLTQYQSPQEEVWLVYRDRVALNHAARLMLDWLLAEV 289


>gi|262041564|ref|ZP_06014761.1| glycine cleavage system transcriptional activator [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259041125|gb|EEW42199.1| glycine cleavage system transcriptional activator [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 305

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 130/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   E++ +L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYFQDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIQWLVPRLTSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   +  
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDKALKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L +H L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAQHTLLH--DASRRDWQTYT------RQLGLSHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV +  DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCLFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|307322677|ref|ZP_07602006.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306891676|gb|EFN22533.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 313

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 129/293 (44%), Gaps = 8/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V +   F+ AA  L++ +S +S+ ++ LE ++G++L  R  R L +TE G
Sbjct: 3   DLNDIALFAAVVKHNGFSAAARDLNVPKSKLSKHVARLEEQLGVRLLERSTRKLRMTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   +   + E+     +P+G +R+A  I     +L   L  F   YP ++
Sbjct: 63  RIFYEHAQGLLDGVAAAEAEIAAVRAEPTGVVRLACPIGFTP-MLADILPAFHRRYPGVR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ ID+  +  D A+R R  +   S LI RK   +     A+P  L      ++
Sbjct: 122 LLITASNRRIDLIEERIDVALRARDQLDTDSQLIVRKFGEVRQRLAASPTLLARLGG-IT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +   ++  +  P  +  +  +      I       +  + +L + +  + G GIA
Sbjct: 181 TDNLSQMPTLSMNEQHPNDV--WRLVHATGGAIEIAHRPVVGCSDFLILERAAIEGMGIA 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLPD+I +       LV ++ +  + +  V+  +P         +A  +F+  
Sbjct: 239 LLPDHICERAFRTGALVPVLPEWTSGNVMVHLVFPSRHGLLPATRALIDFLAE 291


>gi|149910258|ref|ZP_01898903.1| hypothetical transcriptional regulator, LysR family [Moritella sp.
           PE36]
 gi|149806727|gb|EDM66692.1| hypothetical transcriptional regulator, LysR family [Moritella sp.
           PE36]
          Length = 297

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 139/294 (47%), Gaps = 6/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L +F   A++ + T AA QL +S ++ S  +  LE ++G++LF R  R L +T +
Sbjct: 1   MNIQDLTLFVRTAQTCNITAAALQLDMSPAAASAALKRLEKQLGVQLFIRSTRKLRITAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +     +E    LE  +  L E   K +G++R++T+ DLG+N++   L E +  YP++
Sbjct: 61  GERYLVHCTEALAALEKGKASLNEMQGKIAGEIRLSTSSDLGRNIVLPWLDEMMDAYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL + +   D   D  D A+R  +P + SSL+   +  I     A+P YL    EP  
Sbjct: 121 SIQLNVGDSLADFFHDKVDMALRYGEP-EDSSLVAFLIAKIDRVVCASPQYLAQYGEPQH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +HN + +     +  + + +     +   +   + L  N    + ++ V G GI 
Sbjct: 180 PNELSQHNCLLYR-FGERVYDTWPFSDHAGKYNVKVSGNRL-SNDADVVHRWVVAGKGIT 237

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     +  +     +V ++ +  +P+ +++   P   + T  +   R+ +  K
Sbjct: 238 MKSRLDMAADLRAGYVVELLHNFNSPAISLWLICPNRTQVTPAMLMLRDLLRSK 291


>gi|107026107|ref|YP_623618.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692709|ref|YP_838242.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170738041|ref|YP_001779301.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895481|gb|ABF78645.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650709|gb|ABK11349.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169820229|gb|ACA94811.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 307

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 127/296 (42%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  V    SF+ AA QL +S ++++R +  LE  + ++L  R  R L+LTE G 
Sbjct: 4   LQAMRVFTRVVELSSFSLAARQLGMSAAAVTRSVGMLEAHLNMRLLNRTTRSLSLTETGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  KL+  +  L + +  P G LRIA +       L   L  + + +P ++ 
Sbjct: 64  EYLDGCRTIIEKLDEIESNLAQVNRDPHGTLRIAASATSVAAGLGALLSTYRIEHPRVRF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +  +D+     D        + +S+ + R L ++     A+P YL     P+   
Sbjct: 124 DVTTFDIQVDMVEGGYDVCFCDDHRLVNSTFVSRTLTSVRDVIVASPGYLARHGTPVEPV 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL+ H L+T  +   +  E     + VD        + L   S   +    +   GIA L
Sbjct: 184 ELNTHCLLTVSNGAARNWE----FSDVDGSSRIYTGNALASTSNTMVRIAALNHMGIAQL 239

Query: 245 PDYIVKDN---PNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V D+     LV I+E  DV      V   YP     + K+++F +++    R
Sbjct: 240 PHPLVADDLASGTLVPILERYDVNGGPRRVSILYPSRNYLSTKVRSFIDYVVDHYR 295


>gi|327478897|gb|AEA82207.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 326

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 120/289 (41%), Gaps = 6/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR F  +  +GS + AA QL  +Q ++SR++  LE  +G++L  R    + LT  G 
Sbjct: 12  IDLLRTFIRIVDAGSLSAAATQLGTTQPTVSRRLQALERSLGLQLLNRSTHRMQLTGDGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +V       + EL  +   P G LR+      GQN L   L ++L  YP++ +
Sbjct: 72  RCYGFARQVLESWGEMEAELLGARDDPRGTLRVQVPHAFGQNQLVAPLGKYLSRYPNVSV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  + + +  DCAI++   I+  S++  +L  +       P  L     P + +
Sbjct: 132 EWVLHDRSPNFTAEGIDCAIQVGA-IEDPSVVAIRLGEVPRIVVTHPALLGEGPLPTTTE 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +   +          E         R         +  +S  ++    + G G  + 
Sbjct: 191 QLQRLPWLALRTYYTD--EVVLTCQADGRSHRFAIQPRMSTDSLYALRSAALAGLGACVS 248

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++V  +     LV+++         VY  YP A     KL+ F   I
Sbjct: 249 SAWVVAQDIEEGRLVQLVPQWRAAPLPVYLIYPHARSYPAKLRLFAEII 297


>gi|167579655|ref|ZP_02372529.1| glycine cleavage system transcriptional activator [Burkholderia
           thailandensis TXDOH]
          Length = 313

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 131/297 (44%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA +L ++  ++S Q+  LE E+G+ LF RH + L LT+ G 
Sbjct: 2   LNALRVFEAAARHESFSRAANELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGG 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L     E++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 62  RYAQQVRAALALLADATREIRASDRDK--RLAVSTLPSFAARWITPRIGPFIEQHPEIDL 119

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 120 ELRASDTLVDFARDDVDVAIRFGYGV-YPGLYVEPLLDETFFPVCAPT-LNGGVLPETPA 177

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 178 DLVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 232

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         +VR+ +      +  +F  P +L  T +++AFR ++  +   +K
Sbjct: 233 RRSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLLDEIARFK 289


>gi|160896393|ref|YP_001561975.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361977|gb|ABX33590.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 297

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 133/297 (44%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V   GS T AAEQL  + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKTTLDELQAFRAVIDCGSITAAAEQLGQTTSGISRSLSRLEKKLATTLVRRTTRSLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++      EV   L+  + EL      P+G LR+        + +   + EF  LYP
Sbjct: 61  EEGARFLARAREVLQALDAAEEELAARRQAPAGLLRVNAASPFMLHAIVPLVGEFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+     D AIR+ + ++ S+L  R L    +   A+P YL+     
Sbjct: 121 LITLELNTDDLHIDLLAQRTDIAIRIGE-LRDSTLHARLLCHSVLRVLASPAYLQAHGPV 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+  L +H  I    +              DR    P+   L  +S  ++ Q  + G G
Sbjct: 180 ASVAALARHQRIGNSQVPGLNHWPLRTPEGGDRWDAAPQ---LTASSGETMRQLALAGQG 236

Query: 241 IALLPDYI-VKD--NPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  L D++ V+D     LV+++  + +     ++  Y        ++ AF +F+  +
Sbjct: 237 VVCLADFMTVRDRAQGELVQVLARETVQQRQPIHAVYYRNTALAARITAFLDFLAQR 293


>gi|149190832|ref|ZP_01869096.1| putative transcriptional regulator, LysR family protein [Vibrio
           shilonii AK1]
 gi|148835292|gb|EDL52265.1| putative transcriptional regulator, LysR family protein [Vibrio
           shilonii AK1]
          Length = 308

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 126/299 (42%), Gaps = 13/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     +  F  V  +GSFT A+++L ++ S +SRQIS LE  +   L  R  R    T
Sbjct: 7   MAL-LPDIAAFVTVVEAGSFTAASQRLGMTPSGVSRQISRLEAALNADLLERTTRKQVTT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  ++  + ++            +   +  G+LRI+       ++L+  +  FL LYP
Sbjct: 66  DTGKVVYEFSKKIMESASDIANIASQEGGEAQGELRISAPKAFSHHILEPLMLPFLDLYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L++ ++ +D      D    L       +L+ + L  I     A+  YL+    P
Sbjct: 126 KVKLRLLVSDEFVDPFGHNLDIVFELTH-FPRENLVAKTLGEIKAVLCASKSYLQEHGIP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
                L  HN +   +       D  WL   D    + ++     VN     +     G 
Sbjct: 185 FHPNNLLNHNCLFLNEQP----NDNVWLFNKDGENVKVQVDGRYSVNHSEMRLNAVKSGI 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFL 292
           GI + P+++V+      ++++++ +    S     +   +P++     + +AF +++  
Sbjct: 241 GIGIFPEFVVEKALREGDVLQVLPEWHINSRYQGEIVMQFPQSKFMPARRRAFIDYMVA 299


>gi|326319457|ref|YP_004237129.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323376293|gb|ADX48562.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 310

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 126/297 (42%), Gaps = 10/297 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VA +GSF+ AA +  L+ S++SRQ++ LE  +G+ L  R  R L LTE G ++
Sbjct: 12  ELVAFVRVAEAGSFSAAARRHGLTPSAVSRQVARLEKTLGVSLLQRTTRQLRLTEAGLEV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +   T    +     P G +R++      +++L G L  FL L+P++ + L
Sbjct: 72  LERGRAMVAEARATLQAAEGHVGAPRGLVRLSAPKAFARHVLHGPLLSFLRLHPEVDLHL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ ++ +D   +  D  +R+        +  R L+ +     A+P YL         ++L
Sbjct: 132 LVLDRPVDALREDIDLVVRMTDD-PPQGMAARALMPVRQWVLASPGYLAARGAVRRPEDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIAL 243
             H+ +  G+        F       R  G   +       VN     +     G G+  
Sbjct: 191 ASHSCLPLGEQAGDSRWRFVRDGDGRRGDGVVEVQVTGRYTVNHSEMRLAAIEAGLGVGC 250

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +PD++  D   +  +VR++      S      Y  +P +     KL+A  + +  + 
Sbjct: 251 VPDFVAGDALQDGRVVRVLPGWTVDSHYQGIAYLVFPASRHTAPKLRALIDHLVAEL 307


>gi|70731430|ref|YP_261171.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345729|gb|AAY93335.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 301

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 129/294 (43%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V     F  A   L + +S +SR+IS LE  +G++L +R +R  +LTE G
Sbjct: 3   DLNTLYYFTQVVEHRGFAAAGRALDMPKSKLSRRISQLEERLGVRLIHRTSRHCSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++    +  + E     ++ +  +P G +R+A    L  + +   L  F+L YP ++
Sbjct: 63  QEYYQRCLAMRVEAEGAAEVIERNRSEPQGLVRVACPTALLNSWVGPMLTRFMLKYPLVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D A+R+R  P++++ L+ + L          P +L+    P +
Sbjct: 123 LFIESTNRRVDLIHEGFDIALRVRFPPLENTDLVMKVLGNSTQCLVGHPDFLQRLSGPAT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     + +G    +    +  L              +  +  L++    +   GIA
Sbjct: 183 PADLSGLPSVHWGAAQREY--QWQLLGPDGAEALIRHRPRMVTDDLLALRHAVLASIGIA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V+++     L+ ++ D       V+  +P        +++  +F+  +
Sbjct: 241 HLPKVVVREDLEAGRLLELVPDWAPRCGIVHAIFPSRRGLLPSVRSLIDFLGEE 294


>gi|157373592|ref|YP_001472192.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157315966|gb|ABV35064.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 309

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 130/292 (44%), Gaps = 9/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ L L+++++SR+I+ LE + G++L +R  R L LTE 
Sbjct: 1   MDLNRVQMFAQVVEQGSFTGAAKALGLTKATVSRKIAELEADAGVQLLFRTTRSLKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +     +   L+  +  L  S     GKL+I   I++GQ         FL  YPDI
Sbjct: 61  GSAYYNRVHHILIDLKNAEDLLSASQQLIKGKLKIVCPIEMGQLFFGRIFARFLKQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  L N+ +D+  +  D   ++      + L    L+       A+P YL     P +
Sbjct: 121 SIEAELSNRKVDVIEEGVDVLFQITSS-SDTRLQTYSLLNTSKTLMASPEYLAQYGTPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            Q+L+KH  +           D +W L      I     + L VN+     +  + G GI
Sbjct: 180 PQDLNKHRAVKLES----AHIDGSWTLFDGKEWITVEPEAQLTVNNVTLAREAAIEGLGI 235

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +P  I +   +   L+ ++ED       +    P+      K + F  FI
Sbjct: 236 TSVPSLIAQQAIDKHLLIPLLEDFPMAQTKITMSLPQRAYLPRKYRVFIEFI 287


>gi|146310744|ref|YP_001175818.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145317620|gb|ABP59767.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 305

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 134/297 (45%), Gaps = 6/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +L ++  V  +GSFT AA+ L L+++ +S  I  LE E+G+ L  R  R +  T+ 
Sbjct: 2   INMQRLGMYVAVVDAGSFTGAAQTLGLTKAVVSFNIKQLEQELGVSLLTRSTRHVATTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +    ++    E    E++      SG LRI TT + G  ++   L  F   YP +
Sbjct: 62  GERFYHRCQQLLQDAERVLDEVRSDHGGLSGLLRITTTPEYGARVVVPALAAFAAQYPHL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE--P 180
           +IQ +  +K  ++     D AIRL + +  S+   R +    ++  A+P YL +  E   
Sbjct: 122 RIQHVSSSKSDNLISGRFDVAIRLGQ-LADSTHHARLIDQFDIYPVASPAYLDSLSEKGI 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L     I    L                     +   +  +S  +++ + +  +G
Sbjct: 181 NTLEQLASAKWIAHSRLSTPLNWQVLTPDGDHVMFAAHQPVTIMADSAATLLAFSLNHAG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +ALLP ++ +D+     L R++ D + P   +Y  YP       K++ F +F+  + 
Sbjct: 241 VALLPSWLAQDSLAKGTLRRVLPDHVFPRQGIYALYPNTRHVPEKVRTFIDFLHSRV 297


>gi|332716927|ref|YP_004444393.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325063612|gb|ADY67302.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 299

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 124/298 (41%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D+  LR F + A   +F   A +L ++ ++++R I+ LE E+G++LF R  R ++LT
Sbjct: 1   MN-DYKALRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEAELGVQLFVRTTRQVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+            LE  + ++  +     G+LRI+     G+ +L   L  F   YP
Sbjct: 60  TDGAIFAAQIQPAVKTLEEARRDVMNAHKADEGRLRISAPTWFGKAVLPPILSGFKERYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +  ++ L +  ++I  D  D AIR+         I RK+  +     AAP       E 
Sbjct: 120 KMGFEISLSDGLVNIVDDDYDLAIRISSQPSDKFTIWRKIRVVPRILVAAPG--SRFVEM 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               EL   + + +     +     NW L+     +          N+   +      G+
Sbjct: 178 QHPNELTPDDCLAYSGESRR----ENWVLSDGGSSMTISAGRAFSANNGEVLADMAADGA 233

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+A+LP++ V ++     LV + +    P   +   YP       ++ +F  F   + 
Sbjct: 234 GVAMLPNFHVSEHLKSGRLVHVFKGWAPPDLWLTLYYPPYQALPPRIASFSKFFEEQV 291


>gi|253686893|ref|YP_003016083.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753471|gb|ACT11547.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 300

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 15/294 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +GS   AA    +S +++S+ +S LET +G++L  R  R +TLTE G +     
Sbjct: 10  FIRVVENGSIAAAARAKGMSPAAVSQSLSRLETHLGVRLLSRTTRSMTLTENGKRYFEKV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             + H +E    +   S  K  G L IATT   G+ ++   +  F   +PDI I+LI  +
Sbjct: 70  RHIPHDIELA-SQAAASETKLQGPLCIATTAAFGRYVIAPLMPAFKESFPDIDIELISTD 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           ++++  ++  D +IR+   +    LI RK+ ++     AA  YL     P + +EL +H 
Sbjct: 129 RNVNHRLEGVDVSIRIEAQLNDQ-LIARKIASLPFIFCAAQAYLDRAGTPQTPEELSQHA 187

Query: 191 LITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            + F    P       W   V  +P+          +    I +    G G+  L  ++ 
Sbjct: 188 CLVF--RYPTDGRFLPWTFMVNGQPVNVKLNPKFISDDIDIIAKIAANGGGVTRLASFVA 245

Query: 250 K---DNPNLVRIM-------EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +   D+  L  +          V +    +Y C  E      K++AF  F+  +
Sbjct: 246 QPLIDSGQLTPLFCSDRSSGNHVESLPMNIYACVNERSALNSKVRAFIAFLEAE 299


>gi|167840298|ref|ZP_02466982.1| LysR-family transcriptional regulator [Burkholderia thailandensis
           MSMB43]
          Length = 306

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 13/297 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA+ L+ +++++S  +  LE E+G+ L  R  R + LTE G
Sbjct: 3   SLDRFDVFRAVVEAGSFTGAADVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVELTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E    + +       G LR+ +T++    ++   L+EF  ++P ++
Sbjct: 63  ERFYERCLRVLAEAEEAIDDARGEHGGMQGSLRVTSTVEYALRVVAPALREFTSMHPALR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL +  Q   L  R +   T  +   A+P  L       
Sbjct: 123 VRLETHTSQADLVRDRFDVAIRLGRFEQFQDLPYRGVCIDTYDVRPVASPALLAEHGAAR 182

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S   L +   +    L       + D +    V RP  +P    L  ++   +  +  
Sbjct: 183 IESPDALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLCAFAR 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GSG+ALLP+++V+D+     L+  + D   P   VY  YP       K++A+ +FI
Sbjct: 240 QGSGVALLPEWLVRDDLDNGTLIDALPDYRFPQQGVYALYPSTRHVPQKVRAWVDFI 296


>gi|167648799|ref|YP_001686462.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351229|gb|ABZ73964.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 316

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 126/301 (41%), Gaps = 7/301 (2%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D  D +  F  VAR  SFT AA  L ++ +++S  +  LE  +G+ LF R  R + L
Sbjct: 1   MRRDLLDGVVAFATVARRRSFTAAAADLQVTPAAVSHAVKQLEARIGVALFARTTREVGL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +           +E      +     P+G++R+  +      +L   + +F   Y
Sbjct: 61  TEAGRRFLDGARPAVEAMEAATAAARSLGEGPAGRVRLTISRLAFGMVLAPAIADFSRAY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+++++ +D+  + I  +  D  +RL + I    +  R   +       A   L     
Sbjct: 121 PDVRLEVAVDDTSVSIIEEGFDVGLRLGEMIAPDMVAVRVSPSFPFVVVGARSLLDRLGR 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P   ++L     +    +  +   D+ W    D    E  +   + +N +   +   V G
Sbjct: 181 PEHPRDLKGLPCLNIFQMTRR--RDYRWEFAEDGREYEVSVEGPISINDFGFQVGMAVDG 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+A  P+ +V +      L R+++D +      +  YP  L  +  L+AF  F+  + R
Sbjct: 239 LGLAYAPEPLVAELIATGRLERVLDDHLAGPTAWHLYYPSRLGASAPLRAFVEFMRGRLR 298

Query: 296 D 296
           D
Sbjct: 299 D 299


>gi|312961408|ref|ZP_07775911.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311284303|gb|EFQ62881.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 267

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/267 (25%), Positives = 124/267 (46%), Gaps = 7/267 (2%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           + +S S+I + ++ LE  +G++LF+R  R + LT +G         V ++LE  ++EL  
Sbjct: 1   MGVSSSAIGKSVARLEQRLGVRLFHRSTRSINLTAEGMLFLNRCQRVLNELEAAELELSS 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
           +S +P GKLR++    L    L   L  F   YPDI ++L   ++ +D+  +  D  +R 
Sbjct: 61  TSSEPRGKLRVSLP--LAGQFLFTLLSSFAKRYPDIHLELDFSDRLVDVVEEGFDAVVRT 118

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
            + +  S L+ R+L         AP Y +    P+   +L  H+ + +       +E + 
Sbjct: 119 GE-LNDSRLVARRLGAFRFLLVGAPAYFQAQGTPVDASDLSNHDCLLYRVPSTGKLERWP 177

Query: 207 WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVI 263
                   + + R + L  N+   +    + G GIA LP++ VK   ++  L  ++   +
Sbjct: 178 LPDKSHNGMQDLR-AVLVCNNIDMLFNAAMQGRGIACLPEFAVKEALESGELQAVLTQEV 236

Query: 264 TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           T +      +P     T KL+ F +FI
Sbjct: 237 TRTIHFSVLWPPNRFITPKLRCFVDFI 263


>gi|283835422|ref|ZP_06355163.1| glycine cleavage system transcriptional activator [Citrobacter
           youngae ATCC 29220]
 gi|291068595|gb|EFE06704.1| glycine cleavage system transcriptional activator [Citrobacter
           youngae ATCC 29220]
          Length = 305

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTDATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   +  
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDKPLKTPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G GI
Sbjct: 185 DLAKHTLLH--DASRRDWQAYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|261252283|ref|ZP_05944856.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           orientalis CIP 102891]
 gi|260935674|gb|EEX91663.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           orientalis CIP 102891]
          Length = 295

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 125/293 (42%), Gaps = 11/293 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 2   NSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQS 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +++  L     ++ E S    G L I+         L   L +F    PDI ++
Sbjct: 62  YFLDIKDIFTSLAEATDKVLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDVR 119

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   + D     D  D AI   +      L   KL    +    +P  L   +   ++ +
Sbjct: 120 IKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPSLLLGNKPLETLSD 178

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H L+          +D+   A ++   G         +    ++Q    G G+AL  
Sbjct: 179 LKQHTLLH-----DTSRKDWKQFAKLNGIEGVNVNHGPIFSHSTMVLQAAAHGQGVALGN 233

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + + +   +   L+   ++V+      Y    +   + G++  FR+++  KA+
Sbjct: 234 NVLAQPELEAGRLIAPFDEVLLSKNAFYVVCHDKQADMGRIATFRDWMLAKAQ 286


>gi|224825606|ref|ZP_03698711.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602527|gb|EEG08705.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 318

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 129/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F    R  SFT AAE+L+L+QS++SRQI  LE  +G  LF R  + L LT  G   
Sbjct: 10  ALQCFEAAVRHLSFTRAAEELNLTQSAVSRQIRALEDFIGRPLFERVKQRLVLTVAGEAY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +V  + E   ++L        G L IA     G   L   L +F   YPDIQ+ L
Sbjct: 70  AAAVQDVLDRAEAATLQLMA-YSGEGGMLTIAMLPTFGSRWLVPRLGDFAARYPDIQLNL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +   +  D     AD AI     +   + I  +L+   +    AP  L        ++E+
Sbjct: 129 VTQVRPFDFDKVEADVAIHFGPALWPGA-ICHRLMGEDIVPVCAPALLGGRPHLDDVREI 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLGSGIALL 244
             + L+      P+   D+   A ++   G     +S  +   +  ++Q  V G GIA+L
Sbjct: 188 LAYTLLQHTTR-PQAWNDWLHAAGIEGLTGNEAGLLSGPRFEHFFMVIQAAVAGLGIAVL 246

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++V++   +  LV  ++  +      Y  +P    +  K++ FR ++  +A
Sbjct: 247 PHFLVEEELQSGRLVLALDKPVRSQHAYYLVHPATKADLYKVRVFREWLLEQA 299


>gi|239820097|ref|YP_002947282.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239804950|gb|ACS22016.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 307

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 135/295 (45%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   +  F  V   G FT A   L L +S++S ++  LE+ +G++L  R +R   +T+ 
Sbjct: 2   LDLKDVFYFVQVVDRGGFTAAGSALRLPKSTLSHRVQELESYLGVRLLNRTSRQFGMTDI 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++    + H  +  +  +++   +PSG +R+ T +++ Q  L+  L  FL  YP +
Sbjct: 62  GKEFYQYAVAMLHSSDVAEEAVRQRLAEPSGVIRLTTAVEIAQFALREILPVFLNRYPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I  I  ++ +D+  +  D AIR     +Q+S+L+QR L  +  + +A+P YL     P 
Sbjct: 122 RIVEIATDRYVDMVGEGFDLAIRGHTGSLQNSTLVQRALADVPWYLFASPGYLAQSGVPE 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L +H  +      P     +         +  P     Q N+ +++ +      GI
Sbjct: 182 SPADLGQHASVAMVRNGPL---QWQLKGPHGEELAMPIDPRFQSNNMVALKEAACASLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP YI +    +  L +++ D       +    P        +++  +F+ ++
Sbjct: 239 AALPGYICRSELRDGTLQQLLPDWSAADARISALIPFRTGLLPAVRSLVDFLAVE 293


>gi|194365787|ref|YP_002028397.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348591|gb|ACF51714.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 295

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 119/291 (40%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F  VAR GSFT AA  L ++QS++S+ I  LE  +GI+L  R  R ++ T  G
Sbjct: 5   NFNDLLAFVTVAREGSFTRAAGVLGVTQSALSQAIKTLEESLGIRLLTRTTRSVSPTTAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +     +  +E     L      P+G++RI +   + + +L   L   L  YPDI+
Sbjct: 65  ERLLQSIGNHFDDIEMELEALTALRDTPAGQVRITSGDHVLRTVLLPKLMPLLHRYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLS 182
           I+  +     DI  D  D  +RL + I    ++   +   + M     P Y      P  
Sbjct: 125 IEFDVSYALRDIVADRFDAGVRLGESI-DKDMVALPIGPRLRMATAGTPGYFDAHGMPKV 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  I         +  + +     R I       L  ++   ++   + G G+ 
Sbjct: 184 PGDLTGHRCINIRLPTSGGLYVWEY-EKKGREINVRVDGPLVFSTSPHMVDAALDGLGLV 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP   +    ++  LVR++ED        +  YP   + +         +
Sbjct: 243 HLPVDELAPHLESGRLVRVLEDWCPLFPGYHLYYPSRRQPSPAFSLVLEAL 293


>gi|152986512|ref|YP_001348373.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961670|gb|ABR83695.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 307

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 133/291 (45%), Gaps = 11/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V  +GSF+ AA +L  ++S +S++I  LE  +G+ L  R      +T+ G   
Sbjct: 6   DMASFVTVVEAGSFSEAARRLGTAKSVVSQRIQQLERHLGVVLIERGRV-FRVTQLGRHY 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H    +V   +   +  +Q       G LRIA  +    + L   + EF L+YP++++ +
Sbjct: 65  HDFCVQVLGDVRDMEESIQSFDGGLHGVLRIAVPVAFVAH-LAPLIAEFSLIYPELKMDI 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             D++ +D+++   D A+R+   ++ S+L+ R++         +P YL     P S +EL
Sbjct: 124 DADDRHVDLNLGRYDAAVRVG-VLEDSALVARRITANRHVICGSPGYLDRKGRPASAEEL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H+    G L  +      W   V+      RI   ++ ++   ++   + G G++++P
Sbjct: 183 REHD----GLLSMRRAHHGMWRLGVEGREQSFRIRSKMRSDNADILLGATLAGVGLSIMP 238

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++         L  ++   + P   +   Y  A + + K+ AF  F+  +
Sbjct: 239 TFLAGAYLLAGQLEIVLPGCVPPGGEISVVYRRAQRASPKINAFVEFLAQR 289


>gi|167892595|ref|ZP_02479997.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167909311|ref|ZP_02496402.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|167917344|ref|ZP_02504435.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|254295964|ref|ZP_04963421.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157805884|gb|EDO83054.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 321

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G 
Sbjct: 9   LNALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGG 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L     E++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 69  RYAQQVRAALALLADATREVRASERDK--RLVVSTLPSFAARWITPRIGPFIERHPEIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 127 ELRASDSLVDFARDDVDVAIRFGHGV-YPGLHVEPLLDETFFPVCAPT-LNGGMLPETPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 185 DLVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         +VR+ +      +  +F  P +L  T +++A RN++  +   ++
Sbjct: 240 RRSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRNWLLDEIARFR 296


>gi|307544575|ref|YP_003897054.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307216599|emb|CBV41869.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 320

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 129/301 (42%), Gaps = 8/301 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I  LE  +  +L +R  R  ++TE G
Sbjct: 3   DLNDLYYFVQVVDHGGFAPAGRALGIPKSKLSRRIIQLEERLATRLIHRSTRHFSVTELG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R    +  + E  +  ++ +  +P G +R++ +  +   L+   L  F+   P + 
Sbjct: 63  QAYYRHCVAMLVEAEAAEELIERNHAQPRGTVRLSCSPSVLHYLITPLLVRFMSHCPHVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+   ++ +D+  +  D AIR+R  P++ S L  + L +      AAP   +    P +
Sbjct: 123 VQVEATSRRVDVIKEGFDLAIRIRFPPLEDSDLTMKVLASSPQRLMAAPGLFERYPAPRT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L +   + F     + + D +       R +  PR   L  +S  ++ Q  + G G+
Sbjct: 183 PADLRELPSLDFEQYDKQHVWDLSGPEGATARILHHPR---LVTDSAETLHQATLAGHGV 239

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             L   +  D+    +LV ++         ++  +P        ++AF +F+     +  
Sbjct: 240 VKLAMLVGHDDLKRRDLVDVLPGWEPRGGILHAVFPSRRGLLPAVRAFLDFLDEHIEEED 299

Query: 299 F 299
           F
Sbjct: 300 F 300


>gi|260554923|ref|ZP_05827144.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411465|gb|EEX04762.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 310

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 128/295 (43%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQKYHLAASPQYVAKYGTLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL++H  + +     +    +      +  +  P    L  N+  S+M   + G GI
Sbjct: 185 HPTELNQHKCLVYKGF--EGPNRWLVRKPNEEWVHYPITPLLSSNNAESLMTAALHGMGI 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD+++ +     +L++++ +      +    +   YP        ++A  ++
Sbjct: 243 VLFPDWLIGEALKKGDLIKLLPEYEVAIKSHPQHIAAIYPNVRHPPLNIRAVIDY 297


>gi|21229521|ref|NP_635438.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766393|ref|YP_241155.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188989443|ref|YP_001901453.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21110985|gb|AAM39362.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66571725|gb|AAY47135.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731203|emb|CAP49375.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 296

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 126/296 (42%), Gaps = 11/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V R GSF  AA +L L+++ +S  +  LE  +G+ L YR  R  +LT  G
Sbjct: 6   ELRAMAIFATVVRCGSFAAAARELALTRAVVSHHVGALEARLGVPLAYRSTRSFSLTPAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +  +       ++    +P G++R+  +   G   +   L  F   YP I+
Sbjct: 66  EAFRVHCERLLDEASDGLRGMELLRAEPQGEVRLTCSHHFGNKRILPALLAFRRRYPAIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + + + ++D+     D A+R   P+  S+L  R LV       A+P Y+K    P + 
Sbjct: 126 LHIAMGDANVDLVQQGVDLAVRAG-PLPDSTLYARPLVREATLLCASPAYVKRYGMPTTA 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H  + +     +     +        I  P    +  +S +S + + + G GIA 
Sbjct: 185 AALKEHRWVIYPPSQRQTQIQID-----GERIDIPVQGDIVTDSAVSRLAFVLAGEGIAR 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LP Y          LV+++    T    +Y  + + +  + +L   R+F+   AR+
Sbjct: 240 LPGYDAAAPLAAGELVQVLPQAQTAPLEIYLVHSKKIGPSARL--LRDFLLEVARE 293


>gi|270158678|ref|ZP_06187335.1| LysR family transcriptional regulator [Legionella longbeachae
           D-4968]
 gi|289166511|ref|YP_003456649.1| transcriptional regulators, LysR family [Legionella longbeachae
           NSW150]
 gi|269990703|gb|EEZ96957.1| LysR family transcriptional regulator [Legionella longbeachae
           D-4968]
 gi|288859684|emb|CBJ13654.1| putative transcriptional regulators, LysR family [Legionella
           longbeachae NSW150]
          Length = 304

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 134/305 (43%), Gaps = 13/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D   +F  V + G F+HAA  L LS   +SR+I+ LE+++G+ L  R  R L LT
Sbjct: 1   MGM-LDDTALFVAVVQQGGFSHAARHLGLSSGLVSRRIAHLESKLGVTLLKRTTRQLHLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    + +  +  +L      +Q S+ KP G +RI+     G++ L   L +FL  + 
Sbjct: 60  PEGKLFWQHSYRIQQELNEALSLIQSSAKKPKGLIRISAPSYFGRHYLTPLLSQFLDDFQ 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK------PIQSSSLIQRKLVTIHMHAYAAPHYL 174
           DI+I L+LDN+ +D+  +  D  IR          ++ SSL  R +    +  YA+  YL
Sbjct: 120 DIKIDLVLDNQKLDLVKEQLDLVIRGAGYMDNETMLKDSSLQMRLITKEKICLYASTEYL 179

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQ 233
               EP  I EL  H +I+  +L     E +N+  T D   G          N   S + 
Sbjct: 180 LKHGEPKLIDELLNHRIISCMNLNHINQEKWNY--TYDNKHGSVTFEPQFNCNDIDSALI 237

Query: 234 YCVLGSGIALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            CV G GI    D+   I      L  I+       + +Y  YP       + +   +FI
Sbjct: 238 ACVNGCGIGKFTDFNAKIALQQGQLRPILTKYDFGFYHLYAIYPHQQALPRRTRLLLDFI 297

Query: 291 FLKAR 295
               +
Sbjct: 298 MTHLK 302


>gi|239820417|ref|YP_002947602.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805270|gb|ACS22336.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 304

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 126/295 (42%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+ F VVAR  SFT AA Q+ +S+S++S  +  LE  +G++L  R  R +++T+ G
Sbjct: 5   NLNDLQAFVVVARERSFTRAAAQMGVSRSALSHSMLALEARLGVRLLTRTTRSVSVTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L    +     +E     L     KP+G +RI T       +L   L   L  +PDIQ
Sbjct: 65  ARLLHTLAPRLQDIERELESLCAMRDKPAGTVRITTHDHAVATVLWPRLLPLLKQHPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  +D    DI+ +  D  +R+   +    +       + M   A+P YL     P+  
Sbjct: 125 VEFSVDYGFTDIAAERFDAGVRVGNRVDKDMVAVPIAPALRMAVAASPDYLAGKPVPVKP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
            +L  H  +     +P     + W     R     R+    V N+   +++  +   G A
Sbjct: 185 ADLTAHRCVNL--RLPTHGGLYAWDFEKGRKQVSVRVQGQTVFNNTFLMLRAALDDMGFA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +P  I++   +   LV +++D        +  Y    + +  L      +  +A
Sbjct: 243 YVPFDIMEQHIEEGRLVPVLQDWWPAFPGYHLYYAHRRQLSPALALVIEALRYRA 297


>gi|323496359|ref|ZP_08101417.1| Transcriptional regulator, LysR family protein [Vibrio sinaloensis
           DSM 21326]
 gi|323318636|gb|EGA71589.1| Transcriptional regulator, LysR family protein [Vibrio sinaloensis
           DSM 21326]
          Length = 312

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 6/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L+V   VA   S T AA  L +  ++ S  +  +E  +G +LF R  R L L+  
Sbjct: 1   MLLEDLQVVLKVAEIRSITGAATALDMRTATASAAVKRVEASLGEELFVRTTRQLRLSNA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    L   +  ++    +  G++RI+ + DLG+N++   L EFL  +P +
Sbjct: 61  GERYLPQCEKALELLAQAKQSMRGDQQEIDGEVRISLSSDLGRNMVVPWLDEFLDAHPKV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++  L + ++D   D  D A+R   P   S+L   K+  +     A+P YL    EP  
Sbjct: 121 KLRTHLSDSNVDFYRDSVDMALRYGSP-TDSNLYGFKICDVQKILCASPDYLAKHGEPQH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +HN + +   +   ++D        +            N    + ++CV G GIA
Sbjct: 180 PEDLKQHNGLFY--QLHDVLKDEWEFLRDGQEFKVKMSGNRASNDADLVRRWCVAGKGIA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     +  +    N+V +M D       ++   P     T  ++  R+    K
Sbjct: 238 IKSYLDMSSDLLAGNVVEVMADYQPTISELWLVCPSRRSITPTVRLLRDMFREK 291


>gi|167576917|ref|ZP_02369791.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 299

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 122/296 (41%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  I  LE EVG  L  R  R L +T+
Sbjct: 6   DVNLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHIQRLEAEVGASLVVRTTRRLNVTQ 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    ET    +   +    G LR++  +D G  ++   L      +P 
Sbjct: 66  AGRTFYDACRDILRATETALAAVAGEAGPLRGTLRVSAPVDYGALVVAPALVALRDAHPA 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P 
Sbjct: 126 LDIELQCDDRVVDLVRDSLDVAIRLGR-LADSNHRAVKLGGFERWLVASPAFVARHGVPP 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L     +    +    +E  N                   N+  +     + G G 
Sbjct: 185 APEALGALPYVMLSTVPRTTLELAN---ARGERASVRCRRAFASNTATACRAAVLAGGGF 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +   +   D+     LVR++ D   P   ++  +P A   + K++A  + +  + 
Sbjct: 242 GVATSFSSSDDIAAGRLVRLLPDWSFPPGDIHAVFPSASHPSAKVRALIDALKTRL 297


>gi|134293628|ref|YP_001117364.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136785|gb|ABO57899.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 311

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 133/292 (45%), Gaps = 4/292 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT  A  L  +  +ISR +S LE  +  +L  R  R L +T+ G + +
Sbjct: 7   MSVFVKVVEMGSFTAVANHLDTTVGNISRAVSVLEDNLNTRLLQRSTRRLVVTDAGRRFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +   +E  + E +++ ++P G LR+     LG+ L+   +  +   YP++ + L+
Sbjct: 67  ERSVAILSDIERAEAEARDALLEPRGLLRVHAVPGLGRQLVSQAVLAYRSAYPEVSVDLM 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  ++  +  D AI + + +  S+ + +K+ T H    A+P YL     P  +++L 
Sbjct: 127 LSQRMPNLLEEQLDVAIVIARTLPDSAYVSQKIGTSHCILAASPDYLARHPAPECVEDLV 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +     +    ++++        +  P  S   VN   ++      G+GI L+  +
Sbjct: 187 GHTCVLLS-TVDYAPDEWHLQGRAGEAVYRPTGSHFSVNDMDAMSTVLREGAGIGLIAAF 245

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              D+    +LVR++ +  T    VY  Y        K+K F + + ++  D
Sbjct: 246 SAIDDLRKGSLVRVLPEFHTAQRNVYAVYSSRQFVDAKIKRFIDVLKVQVGD 297


>gi|298717169|ref|YP_003729811.1| HTH-type transcriptional activator AmpR [Pantoea vagans C9-1]
 gi|298361358|gb|ADI78139.1| HTH-type transcriptional activator ampR [Pantoea vagans C9-1]
          Length = 300

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 130/288 (45%), Gaps = 5/288 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            W++L+   V+A   SF+ AAE L L +S++S  I GLE  +G++LF+R  R + +TE G
Sbjct: 5   SWNELQAVKVIAGQRSFSRAAEVLGLKRSTLSHMIKGLEATLGVQLFHRTTRSVAMTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    + +  +++    ++  S+ +P G LRI+ +      LL+  L  F+   P I+
Sbjct: 65  EMLIARLTPLLTEMDELLNDVTASAQQPYGTLRISASDAAISLLLETVLPAFIQQKPGIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+   + +DI     D  IRL + +    +       +     A+P YL    +    
Sbjct: 125 IDLVAQGQLVDIVAQGFDAGIRLIENVPKDMVAIPLSGPLRFVTVASPEYLSGRPKVCHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++ +H  +     +P            ++         L +++   +++  V G G+A 
Sbjct: 185 RDMMQHACL--RQRLPGGKRYHWEYKQHEQQFALDVPGSLTLDNSALMVEAAVAGLGVAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P+   +   D   LVR++ED    S  +   +P+       L+ F +
Sbjct: 243 VPEPYARQGLDTKRLVRLLEDWTIASQGLALYFPQNRHMPVALRLFID 290


>gi|190575513|ref|YP_001973358.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190013435|emb|CAQ47070.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 297

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 134/296 (45%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + ++V+ ++   GS + AA  L +S +   + +  LE  +G++L  R  R   +T
Sbjct: 1   MNL-LESMQVYVLIVDKGSLSAAAAALAISPTMAGKHLRALEARLGMQLLSRTTRRQHMT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +    E+   +E T  + Q   + P+G LRI+  +  G + L   L +++  YP
Sbjct: 60  PFGEDYYARCREILRLVEETDAQAQYQHLAPAGTLRISAPVIFGTHALVPALADYMARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++  +L ++ +D++ +  + A+R+     SS L+ R L    +   A+P YL     P
Sbjct: 120 DVRVDAVLTDRVVDLAEEGFEAALRIGTLADSSVLVARALAPYRLMMCASPGYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +  L +H  ++F     +      WL      +G      LQ+N+  ++    + G G
Sbjct: 180 SDLLALARHQCLSF-----EPSALAQWLQADAGGLGHVPTGRLQINNGEALRTAALHGLG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I L    ++  +     LV++  +       ++  Y      + +L++F +F+  +
Sbjct: 235 IVLQSALLLAADVEAGRLVQLFPEHGHAGRPMHVVYAHDRYPSTRLRSFIDFLVER 290


>gi|170765790|ref|ZP_02900601.1| glycine cleavage system transcriptional activator [Escherichia
           albertii TW07627]
 gi|170124936|gb|EDS93867.1| glycine cleavage system transcriptional activator [Escherichia
           albertii TW07627]
 gi|323966786|gb|EGB62217.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|323978581|gb|EGB73663.1| LysR substrate binding domain-containing protein [Escherichia coli
           TW10509]
 gi|327251549|gb|EGE63235.1| glycine cleavage system transcriptional activator [Escherichia coli
           STEC_7v]
          Length = 305

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAKHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|298292013|ref|YP_003693952.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928524|gb|ADH89333.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 300

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 123/298 (41%), Gaps = 4/298 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D L VF VVA   SF  AA++L +++S++S+ +  LE  +GI L  R  R ++LT
Sbjct: 1   MEADLDALAVFAVVAEERSFRAAADRLGVTRSAVSQTMRRLEERLGIALLQRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +    ++ +     +     P G+LR+A +      L    L  F   +P
Sbjct: 61  EAGERLFTDAAPALAEMRSALEAARNLRGSPRGQLRLAVSSIAEDFLAGPMLAAFAAAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ +++ +++ DI  +  D  +RL + I+   +              AP YL+    P
Sbjct: 121 AVELDIVVTDEEFDIVSEGYDAGVRLGEVIEQDMIAVPVSGAQRQIIVCAPAYLERRGAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL  H  I +          + +     R         +  N    +++  + G+G
Sbjct: 181 AHPRELAAHRCIGWRPAPRVAPYRWEFTEE-GREFAVTVAPEITTNDMALMIKLALAGAG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I    +   +   D+  LV ++E    P    Y  YP       KL+A    +    R
Sbjct: 240 ITCGLEESFRPFLDSGRLVAVLEAFCPPFAGFYLYYPNRRNMAPKLRALVEHVRRDGR 297


>gi|261339735|ref|ZP_05967593.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318564|gb|EFC57502.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 310

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 126/299 (42%), Gaps = 10/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +   L +F  V  + +F+  A +  +S S +SR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   NINLRALLIFIDVYETQNFSVVARREGISASQVSRVIHQLEDALGQQLFYRNTRAMIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R    +   LE  + E+ E + +PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGHLFIRHARAIAGNLEDARREMDERAGEPSGVIRINGPVFFGQKHIAPGLAGLAARYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L +  ID   D AD   R+   +  SS   R       H  A+P YL+    P 
Sbjct: 126 LSIELTLTDDFIDPHRDAADLIFRIGA-LTDSSFHARGFGQQFYHLAASPAYLRQYGAPQ 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H+ + +                       P    +  N+  +++   + G GI
Sbjct: 185 GPEDLSRHHCLVYRGSSGPNRWLVRQPGH--EWTHYPVAPLMTSNNAETLLVAALGGMGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L PD++V D   +  LV ++ D      T   ++   YP A      ++A  ++   +
Sbjct: 243 VLFPDWLVSDKLKSGELVALLTDRECSINTEPQSIAAIYPNARHPPLNVRAVIDYYVER 301


>gi|311278243|ref|YP_003940474.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308747438|gb|ADO47190.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 305

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   E++ +L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFQDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLTSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   +  
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEKALKTPM 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L +H L+   D   +  + +       R +G   I+  Q    +    ++Q  + G GI
Sbjct: 185 DLAQHTLLH--DASRRDWQTYT------RQLGLTHINVQQGPIFSHSAMVLQAAIHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILSKA 292


>gi|307727578|ref|YP_003910791.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307588103|gb|ADN61500.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 297

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  ++VF  VA   SF+  AE+L  S S ++R +S LE  +GI+LF R  R + LT
Sbjct: 1   MDL-FRAMQVFTQVAECRSFSQTAERLSTSTSVVTRHVSCLEKHLGIRLFQRTTRKVVLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G++      ++  +LE  +        + SG++RI          L     ++   +P
Sbjct: 60  QAGAEYADGCRDLLRQLEAVESRATTEQTELSGEIRIVALGSFSLLQLTPLFADYQARFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + + L  + +D+     +  I     ++S +LI R+L++      A+PHYL     P
Sbjct: 120 RVNLNVTLTERRVDLLEGGFEVGIVSEHMVRSETLILRRLISSFCIPVASPHYLALAGHP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L    +I+         + + ++    +         + VNS +  MQ  + G G
Sbjct: 180 KTPADLKTCRVISVP--TDTAQQAWVFVDREGKQESVTVQPSMTVNSVVMQMQLALNGMG 237

Query: 241 IALLPDYIVKDNPN---LVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
           +ALLP+ +V D      LV +++          V   YP     + K++AF N
Sbjct: 238 VALLPNELVADALRARTLVHVLDAYSLLNADVAVSLVYPSRDFVSRKVRAFIN 290


>gi|323498633|ref|ZP_08103625.1| DNA-binding transcriptional activator GcvA [Vibrio sinaloensis DSM
           21326]
 gi|323316331|gb|EGA69350.1| DNA-binding transcriptional activator GcvA [Vibrio sinaloensis DSM
           21326]
          Length = 302

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L     ++ E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTSLAEATDKVLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +   ++ 
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPSLLLGQKPLETLT 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+          +D+   A  +   G         +    ++Q    G G+AL 
Sbjct: 185 DLKQHTLLH-----DTSRKDWKQFAKQNGIEGVNVNHGPIFSHSTMVLQAAAHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   +   L+   ++V+      Y    E   + G++  FR+++  KA+
Sbjct: 240 NNVLAQPEMEAGRLIAPFDEVLVTKNAFYVVCHEKQADMGRIATFRDWMLAKAQ 293


>gi|152981601|ref|YP_001353561.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281678|gb|ABR90088.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 300

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 131/291 (45%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VA  G+FT AA +L +SQS++S  I  LE  +G+ L  R  R ++ TE G
Sbjct: 5   DLSDLAAFATVAEEGNFTRAAARLGMSQSALSHAIKALEQRIGLPLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R        +      L + S  P G +RI T     + L+Q  L  F+  YP+I 
Sbjct: 65  ERLLRTLRPALDGITAELASLSDLSETPRGVVRITTDQIAARWLIQPVLARFVEQYPNIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  D+   +I  D  D  +RL + I+   +  R    + +   A+P YL N   PLS 
Sbjct: 125 VEVNNDDGLTNIVADRFDAGVRLGELIEQDMISVRIGPDVKVAIVASPAYLANRGLPLSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  + +       +  + W  T +  + E R+   L  N +       + G+GI 
Sbjct: 185 QDLKNHRCLNYRLATAGGL--YAWEFTRNGRMIEVRVDGPLIFNDWTLSYAAVLEGAGIG 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++ V+    +  LVR+++D        +  +P+  + T  L A  + +
Sbjct: 243 YCFEHQVEQDIADGRLVRMLQDWSPTFHGYHLYFPDRRR-TPALSALIDAL 292


>gi|49084644|gb|AAT51219.1| PA0123 [synthetic construct]
          Length = 303

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V   GS   AA+ L ++ S++S+QI  LE+   + L +R  R LTLTE
Sbjct: 1   MDSLKGMAIFATVVDKGSMAAAAQSLGMTPSTVSQQIRKLESRAQVTLLHRATRRLTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  +++    E  +  L E    P G+LR+A  +     L+   LK  L  +  
Sbjct: 61  AGEAFYRSCAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGFSGTLITQALKPLLENHRQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL   ++ ID+  +  D AIR+   +  SSL+ R L        AAP YL+      
Sbjct: 121 LRLQLFFQDERIDLVAERIDLAIRVGN-LADSSLVARHLGDWSSVLCAAPAYLRQRAPIN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L + + I+            +     V +   EPR++    N  L++ Q+ + G G
Sbjct: 180 RPEQLTEVDWISLNTSNHLNHLTLSGPGGEVCKLRLEPRVAA---NGMLAVRQFTLDGLG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  P   V+D   +  L +++ +   P   +Y   P       K+K     +
Sbjct: 237 VSYQPLPEVRDALNDGRLQQLLPEWRIPGLGIYAVTPRREAQPAKVKVAIEAL 289


>gi|327480755|gb|AEA84065.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 306

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 118/271 (43%), Gaps = 7/271 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
             L +S +  S+ +  LE  +G+KLF+R  R L+LTE G         +  +++  +  +
Sbjct: 25  RHLDMSPAMASKHVDALERRLGVKLFHRSTRRLSLTEAGGNYLEACQRILPEIDEAEAGV 84

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
               V+ +G LR+   +  G   +   + EF   +P ++++L L +  +D+     D A+
Sbjct: 85  ASQRVEATGLLRMNVPLTFGTQFIAPLIPEFSRRHPAVKVELGLTDSQVDLLDGGWDMAV 144

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R+ + ++ S L  R L    +   AAP YL     P S+ +L +HN + +   +      
Sbjct: 145 RIGR-LEDSPLQARGLADCPLLVCAAPSYLDQRGVPRSVADLGQHNCLGYS--LSALAGG 201

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRI-ME 260
            +W       +       L  N+  +++   V G G+   P +IV     +  LV + ++
Sbjct: 202 KHWAFGEHAELRVAVSGDLLANNGEALVAAAVGGQGVIYQPQFIVASALRSGELVALELD 261

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                   ++  YP   +   K++   +++ 
Sbjct: 262 QPCMGLGGIHVVYPPDRRPPAKVRVMIDYLV 292


>gi|296389175|ref|ZP_06878650.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 312

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 125/298 (41%), Gaps = 6/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L ++  V   G F  A   L + +S+ISR+++ LE  +G++L  R  R   +TE 
Sbjct: 7   FDLNALFIYAKVVEHGGFAPAGRVLGIPKSTISRKVAQLEARLGVRLVQRSTRQFQVTEI 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R    +  + E  +  ++++  +P G +R+  +  L    L   L  F+  YP++
Sbjct: 67  GQAYYRHCVAMTVEAEAAEDVIEQNRSEPCGMVRLTCSTPLLHFELAPMLARFMAQYPNV 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +   N+ +D+  +  D ++ LR  P++ S L+ + L        A+P  L   R P 
Sbjct: 127 ELYVKTFNRRVDVIAEGYDISLSLRFPPLEDSDLVMKVLARSPQVLVASPELLARYRPPE 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     + +     +       + T            L  +   ++ Q  + G GI
Sbjct: 187 LPADLSAMPYVGWER--SRLDGSLRLVGTDGSSAALNLRPQLLSDDLGTLRQAVLEGVGI 244

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +V  +     LVR++ +       V   +P        ++A  +F+     D
Sbjct: 245 GGLPLCVVSRDLAERRLVRVLPEWTPVEGMVVAMFPSRRGLLPSVRALIDFLAAGFAD 302


>gi|323495113|ref|ZP_08100200.1| DNA-binding transcriptional activator GcvA [Vibrio brasiliensis LMG
           20546]
 gi|323310664|gb|EGA63841.1| DNA-binding transcriptional activator GcvA [Vibrio brasiliensis LMG
           20546]
          Length = 302

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L     ++ E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTSLAEATDKVLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +   ++ 
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPSLLLGNKPLETLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+          +D+   A  +   G         +    ++Q    G G+AL 
Sbjct: 185 DLKQHTLLH-----DTSRKDWKQFAKQNGIEGVNVNHGPIFSHSTMVLQAAAHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   +   L+   ++V+      Y    +   + G++  FR+++  KA+
Sbjct: 240 NNVLAQPELEAGRLIAPFDEVLLSKNAFYVVCHDKQADMGRIATFRDWMLAKAQ 293


>gi|218547680|ref|YP_002381471.1| DNA-binding transcriptional activator GcvA [Escherichia fergusonii
           ATCC 35469]
 gi|218355221|emb|CAQ87828.1| DNA-binding transcriptional dual regulator [Escherichia fergusonii
           ATCC 35469]
 gi|324111208|gb|EGC05191.1| LysR substrate binding domain-containing protein [Escherichia
           fergusonii B253]
 gi|325496156|gb|EGC94015.1| DNA-binding transcriptional activator GcvA [Escherichia fergusonii
           ECD227]
          Length = 305

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++ +L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIQWLVPRLSSFNTAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH L+          +   ++  +       +   +  +    ++Q  + G G+AL 
Sbjct: 185 DLAKHTLLHDASR----RDWQTYIRQLGLNHINVQQGPI-FSHSAMVLQAAIHGQGVALA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 240 NNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILEKA 292


>gi|238894795|ref|YP_002919529.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547111|dbj|BAH63462.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 296

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 130/294 (44%), Gaps = 10/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  ++ +++F  +  +GSF  AAE L + + ++++ +  LE E G++L  R  R L LT
Sbjct: 1   MNL-FENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G + +R +  +  + +              G+LR+   I   + L+  +L +F   +P
Sbjct: 60  PEGEEFYRRSKPLLSQADDLLESF-APDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L   +   D+  D  DC +R+   ++    + R L  + +   A+P YL     P
Sbjct: 119 EVEIVLSSSDVRRDMLRDGLDCLLRVGD-LEDGDYVARSLGEVALTTCASPGYLARYGAP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            ++++L  H  +    +     +   W       I +  I   L +++        + G 
Sbjct: 178 ATLEDLQSH--LAVNWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDNSEVFTAAGLAGL 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+     + ++   D+  LV ++ D   P   +   YP     + K++ F +++
Sbjct: 236 GMLQGMRFFLQPYIDSGQLVEVLPDFPAPRRPLSLLYPH-RHLSHKVRVFADWL 288


>gi|104784293|ref|YP_610791.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95113280|emb|CAK18008.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 303

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 128/294 (43%), Gaps = 4/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L +R +R  +LTE G
Sbjct: 3   DLNSLYYFTQVVEHGGFAPAGRALDMPKSKLSRRIADLEERLGVRLLHRTSRHCSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E     ++ +  +P G +R++    L  + +   L  ++L YP ++
Sbjct: 63  QAYYNRCLAMRVEAEGAAEIIERNRSEPRGLVRVSCPTTLLNSWVGPMLTRYMLKYPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D A+R+R  P++++ ++ + L          P +L+       
Sbjct: 123 LFIESTNRRVDLLHEGFDIALRVRFPPLENTDMVMKVLSNSTQCLVGHPSFLEQLPAGFD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L     + +G    +   +        + +  P    +  +   ++  + V G GIA
Sbjct: 183 PQQLSTLPSLHWGGAQREYQWELFQGEDRAQSLVIPHKPRMVTDDLFALRHFVVAGVGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP   V+++     LV ++ D       V+  +P        ++A  + +  +
Sbjct: 243 HLPRVAVREDLAAGRLVEMLPDWQPRCGIVHAIFPSRRGLLPSVRALIDHLAEE 296


>gi|220919656|ref|YP_002494959.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
 gi|219952076|gb|ACL62467.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 310

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + L  F  VAR+GSFT AA QL +SQ ++S+ + GLE  +G++L  R  R +  TE G
Sbjct: 5   SLNDLFAFIAVARTGSFTRAAAQLGVSQPALSQTVRGLEARLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +     + ++E     L E   KP+G +RI  T      +L   LK  L  YPDI+
Sbjct: 65  ERLLKAVGPRFAEIEAGLAMLAELRGKPAGTVRITATEHAANTVLWPTLKRVLPEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    DI  +  D  +R    +       R    + M A AAP Y     +P   
Sbjct: 125 VEIAVDYGLTDIVAERFDAGVRYGGTVAKDMTAVRIGPDVRMAAVAAPAYFAGRSKPERP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H+ I     +P     + W    D R +       L  N+   I+   + G GIA
Sbjct: 185 EDLTIHDCINL--RLPTRGGLYAWEFEKDGRELRVWVEGQLVFNTVTLILLAALDGFGIA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+  V+   D   LVR++ED   P    +  YP   +    L      +
Sbjct: 243 YLPEDGVQAHLDTGALVRVLEDWCEPFSGYHIYYPSRRQPAQALAVLVEAL 293


>gi|121604536|ref|YP_981865.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593505|gb|ABM36944.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 320

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 133/307 (43%), Gaps = 11/307 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   V   GS   AA  L L+   ++++++ LE  +G +LF R  R ++ T +
Sbjct: 1   MDRTDLELVVAVRDHGSLAAAARSLDLAAPMVTKRLAALEARLGQRLFQRTTRRVSPTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +      +       + ELQE   +P+G +R+A T   G+  L   L  F   +P I
Sbjct: 61  GETVCERAVVLLQGFSALEAELQERKAEPTGLIRLAATFGFGRLWLGPALAIFQERHPRI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQL L  +  D++ +  D AI L   +  Q++  + R+L        A+P Y++    P
Sbjct: 121 DIQLQLTEQLPDLASEGFDGAIWLWSVQGRQAAQWVSRRLARNQRVLVASPGYVQRHGMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISC---LQVNSYLSIMQYCV 236
             I  L +H  +   +      + F+ W           R+     L  NS   +  +C+
Sbjct: 181 EDINALQEHACLIVRENGNSQGQSFDTWTLHKGNSKTPERVRVRGPLSSNSGELVRDWCL 240

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI L   + +     +  LVR+++D   P   +++  P    +  +++   +F+  +
Sbjct: 241 DGRGIMLRSLWDIAPWLASGQLVRVLQDHAMPDADIHWLAPYRTDSPRRIRLLIDFLVAQ 300

Query: 294 ARD--WK 298
            +D  WK
Sbjct: 301 FQDEPWK 307


>gi|261867371|ref|YP_003255293.1| LysR protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412703|gb|ACX82074.1| LysR protein [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 297

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 126/297 (42%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++LR F   A+ GSFT AA +L++S S++S  I  LE ++ IKLF R  R +  T
Sbjct: 1   MIDNINELRTFITAAQEGSFTKAAAKLNVSTSALSHSIRKLEEQLNIKLFNRTTRSIATT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L +    ++  +E     L        GKLRI     +  ++L   L  F   YP
Sbjct: 61  EAGEQLFQNLLPLFESIEDNLNALSTFRNTLKGKLRINGNDHVFLSILWDKLMAFAEQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  D K +DI     D  IRL   +    +  R    + M     P Y      P
Sbjct: 121 EMELELTSDTKFVDIVAGRFDAGIRLGSDVAQDMIAVRLSDKMQMAVVGTPEYFAKKATP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR----ISCLQVNSYLSIMQYCV 236
             +++L +H  +     +P       W     +             L  N+   I +  +
Sbjct: 181 KKVEDLGEHECLLV--RLPTSDSIMTWEFQPAKKSAPVVKFHPKGQLCFNNSHLISRAVL 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +G G+A LP   ++   D+  LV ++ +V       +  YP   +N+   KA    +
Sbjct: 239 VGKGLAWLPIDTMQPYLDSGELVEVLSNVAISYDGYHLYYPNRRQNSPLFKALVAAL 295


>gi|115375934|ref|ZP_01463182.1| transcriptional Regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820710|ref|YP_003953068.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367017|gb|EAU66004.1| transcriptional Regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393782|gb|ADO71241.1| Transcriptional Regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 339

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 124/293 (42%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L+VF   A +GSF+ A+  L+++ +  S  +  LE  + ++LF R  R L LT++G 
Sbjct: 30  FEDLQVFVAAADAGSFSAASRVLNVTPAVASTAMKRLEQALEVRLFIRSTRSLRLTDEGE 89

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           LE  ++ +       +G L+++   D G+N+L   L EF   +P + +
Sbjct: 90  RYLVHARLALRALEDGRMTVARRKGDLTGTLKLSVPSDFGRNVLLPWLDEFQSTFPKLTV 149

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           QL + ++  D+     D AIR    ++ S+L+ + L         AAP YL     P ++
Sbjct: 150 QLRVSDRVADLYRQPVDVAIRYG-TLEDSALVSQPLAPTNRRVLCAAPAYLARHGAPETL 208

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L +HN + F  L     + +++       +     +    +    + ++ + G GI  
Sbjct: 209 EGLRRHNCLRFT-LGDGVHDRWSFQGPKGLEVITVDGNRF-CDDADVVRRWALAGQGIVY 266

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +  +     LV ++         +          +  +   R+F+  +
Sbjct: 267 KSFLDLAGDLKAGRLVPLLPAYKGEPTPLQLVCAHRSLLSPAVGRLRDFLKAR 319


>gi|209809599|ref|YP_002265138.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
 gi|208011162|emb|CAQ81589.1| HTH-type transcriptional regulator, LysR-family [Aliivibrio
           salmonicida LFI1238]
          Length = 297

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  + VV   GSFT AA++L ++ S++S+ I+ LE+ + +KLF R  R L +TE G K+
Sbjct: 4   DLATYIVVVNEGSFTAAAKKLGVTPSALSKLITRLESALSVKLFERTTRSLLITESGKKI 63

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++ +  +    +          + PSG L +A        +LQ  +  FL+ YP IQ++L
Sbjct: 64  YQQSVIMVEAAQQAIDISSSEHIVPSGSLTVAAPKAFLTIVLQALVTPFLIKYPKIQLKL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DI++     D   RL     +  LI +++  +++   A+P Y++    PL  +EL
Sbjct: 124 RASDGDINMIAQGIDVVFRLTDK-PTEGLIMKEIGKVNLSLCASPSYIEERGLPLHPKEL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +  G+      E        +            VN     +     G GI + PD
Sbjct: 183 PNHDCLYLGETTDHIWE----FVKGEESHVIAVTGRYAVNHSQMRLNGVRDGFGIGIFPD 238

Query: 247 YIVKDNP---NLVRIMEDVITPSFTVYFC----YPEALKNTGKLKAFRNFI 290
           +++K+     ++V ++ D        +      Y +      ++K F  F+
Sbjct: 239 FVIKEALANNDVVPVLSDWQI-KGNYHGVIAMQYAQNKYMPSRIKVFTEFV 288


>gi|254246798|ref|ZP_04940119.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
 gi|124871574|gb|EAY63290.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
          Length = 327

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 136/294 (46%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  + + L +F     +G  + AA +L L +S++S++++ LE  +G +L +R +R   LT
Sbjct: 21  LKVNLNDLYLFVQAVEAGGMSAAARRLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLT 80

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G++          + +  +  +   + +P+G +RI +++ + Q++L   L    + +P
Sbjct: 81  PVGAEFFEHARAAVIEADCARDAVLRQAAEPAGVVRITSSVPVAQHILAPCLPVLAIAHP 140

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + +Q+   ++ +DI+ +  D A+R    P+  S+L+QR L    +   AAP YL     
Sbjct: 141 KLLLQIHASDRLVDITQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPAYLARAGT 200

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H+ +  G       + +      D     PR+  LQ +    ++Q    G 
Sbjct: 201 PDTPADLAQHDGLHPGP------QPWRLQRAGDAVDVTPRL-RLQADESTLLLQAATAGL 253

Query: 240 GIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A LPD+I      +  LVR++      + T     P        ++A   F+
Sbjct: 254 GLACLPDWIAGAALASGALVRVLPGWCAGTVTTTLLMPHRRGQLPGVRAAVEFL 307


>gi|146311533|ref|YP_001176607.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145318409|gb|ABP60556.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 299

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 132/293 (45%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++++R+F  +A  GS T AA +L ++  S+S+ +  LE  +G  LF R  R + LT+ G 
Sbjct: 6   YNQIRIFQSIAHEGSITAAARKLEITPPSVSKALKLLEQHIGHPLFVRTTRRIELTDAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L + TS     LE     +++ + +PSG +RI  +      +L+  + EF   YP IQ+
Sbjct: 66  QLLQQTSRAVQSLENAVESIKDLNQEPSGLVRITLSRFAYLLILKPCMAEFCQSYPGIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           ++ + +  +++  +  D  IR    ++ S ++ R+L+       YA+  YL     P   
Sbjct: 126 EISVYDGTVNMIDERFDLGIRFGDILEES-VVARQLMKPFREGLYASAAYLAEHGTPKLP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H LI +  +    +     L      +       +  N    +      G GI  
Sbjct: 185 TDLHQHQLIGYRFITNNRILPL-MLEDKGEQLTVEMAGQIISNDIDVMADGIRSGLGIGR 243

Query: 244 L--PDYIVKDNP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L  P Y ++ +    + +M         VY  Y ++     ++KA  +F+ +K
Sbjct: 244 LFEPVYELQPDKAQFIPVMMSYWKTYPPVYLYYLKSTGKAKRVKALIDFLIMK 296


>gi|15596935|ref|NP_250429.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9947715|gb|AAG05127.1|AE004600_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 304

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 113/291 (38%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +AR  SF  AA  L ++  ++S  +  LET++GI+L  R  R ++ TE G
Sbjct: 5   DLAGLAAFVAIARERSFRRAAATLGVTPPTLSHTLRELETQLGIRLLNRTTRNVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       +  +      L      P G +RI    +    +L     E    YP I 
Sbjct: 65  EHLLAHLDPAFEDIAAALDSLNRFRETPHGLVRINAPRNAIGLVLAPRFGELARDYPGIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ D    +I     D  IRL + +Q      R    + +   A P Y +    P S 
Sbjct: 125 LEVVADEGFANIVEAGFDAGIRLGEDLQHGMRAVRVGPDLRLAIVATPAYFRRQGRPGSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +EL  H  I +  +     E + W  +   + +       L ++    ++Q  +   GIA
Sbjct: 185 EELLGHRCIGWRKV--SSGELYKWQFSKGTKALSVAMSGPLVLDDPRLMLQAALADVGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  V ++     L R++ D   P    +  YP    +   L A  N +
Sbjct: 243 FAIEEEVAEHLAAGRLERVLADWCAPFPGFHLYYPNRRNHPAALSAVINLL 293


>gi|315123415|ref|YP_004065421.1| predicted DNA-binding transcriptional regulator [Pseudoalteromonas
           sp. SM9913]
 gi|315017175|gb|ADT70512.1| predicted DNA-binding transcriptional regulator [Pseudoalteromonas
           sp. SM9913]
          Length = 299

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 128/295 (43%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  +   GSF+ AA  L L+ + +SR +S LE+ +   L  R  R L LTE+G  
Sbjct: 12  EDLEMFITIVDCGSFSGAASLLDLNVAKVSRALSRLESRLNCTLLNRTTRRLELTEEGHI 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +  + L   +  ++     PSG LRI        + L   + EF   YP I + 
Sbjct: 72  YIEYARKALNTLLLGEETIKLLKQAPSGHLRIDAASPFVLHQLAPLVNEFKKQYPQITLD 131

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +  ID+     D AIR+   ++ S+L  RKL    +   A+  YLKN      + +
Sbjct: 132 ITSHDNIIDLLERKTDLAIRIGD-LKDSNLHARKLGQSKLKLVASTDYLKNAPPLQQVSD 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HNLI F +             ++           L+ +S  +I   C+   GIALL 
Sbjct: 191 LKNHNLIGFSEPNTLNQWPLKHEQSLHFD--------LRASSGETIRHLCIADQGIALLS 242

Query: 246 DYIVKDNP---NLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +++ ++     L+ ++   ++      ++Y  Y +    + ++ AF +FI  + 
Sbjct: 243 QFMIAEDLAKKRLIEVLPHSVSSPNNRESIYGVYYKNEAVSSRIVAFLDFIQPRL 297


>gi|186470458|ref|YP_001861776.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196767|gb|ACC74730.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 306

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 58/279 (20%), Positives = 119/279 (42%), Gaps = 6/279 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E   G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTPAAVSKRLTQMEQRAGVPLVNRTTRRMMLTPEGEVYLEHARRILDEIDALSELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +   P G LR+  T+  G++ +   +  F+  Y  + +QL L      ++ D  D  I
Sbjct: 87  GSARKSPKGLLRVNATLGFGRSHVAPAISRFVSRYSQVAVQLQLSVTPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   S ++ R+L        AAP Y+     PL+  EL +HN I    GD      
Sbjct: 147 RFGEP-PDSRVVARRLAPNRRLLCAAPSYIAEYGVPLTPHELVRHNCIGIRQGDEAYGIW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
                     +         L  N     +++ + G GI +  ++ + +   +  LV+++
Sbjct: 206 RLSTGRGAARKTEAVRINGNLTTNDGEIAVKWALEGHGILMRAEWDINEYLADRRLVQVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
               TP   ++  Y +  + + +++ F +FI  + R  +
Sbjct: 266 PAYETPGADIFAVYSQRHQMSARIRTFVDFIAGELRQAR 304


>gi|269962992|ref|ZP_06177329.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832235|gb|EEZ86357.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 293

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 133/295 (45%), Gaps = 11/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L++F  V   GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT  
Sbjct: 1   MKIDDLKLFIKVVELGSFTAAANALDLPRANVSRRIGELEQSLGAQLFHRTTRSLSLTNN 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    +    L++   ++   + +  G++++    +    L++  L  F   YP +
Sbjct: 61  GEAYYENLQKALTMLDSANEQVSNDTNEVRGRIKLGLLPE-TDELVRPILFNFHDKYPHV 119

Query: 123 QIQLI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +  ++N   D+     D A      +  S ++ RKL+T+     A+P+YL+    P 
Sbjct: 120 ELDIRNINNGFSDMFQQGLDIAFH-GGALFDSDIVARKLLTLDRCLVASPNYLETHGMPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++++L +H  + F    P    D  W          P+   L  N+   I    +L  GI
Sbjct: 179 NLEQLKEHQCVCF--RWPNGEVDNVWHFQEQSVQLHPK---LISNNIGFIKNATILDRGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +P  +VK   ++ +LV+++        + +  YP+    +   +   + +  +
Sbjct: 234 TFMPKLLVKRELESGSLVQLLSQYSVTEESGWLLYPQPKTLSQASRLLIDHLIKE 288


>gi|116249122|ref|YP_764963.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253772|emb|CAK12166.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 299

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 122/292 (41%), Gaps = 9/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D+  LR F + A   +F   A +L ++ ++++R I+ LE ++G++LF R  R ++LT
Sbjct: 1   MN-DYKLLRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEEDLGVQLFVRTTRQVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+            L+  + +L  +     G+LRI+     GQ +L   L  F   YP
Sbjct: 60  TDGAIFAAQIQPAVQTLDNARKDLMNTHKADHGRLRISAPTWFGQQVLPPILSAFRERYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I  ++ L +  ++I  D  D AIR+         I RK+  +H    AAP       + 
Sbjct: 120 KISFEISLADGLVNIIDDDYDLAIRISAAPSDKFTIWRKISVVHRILVAAPG--SRFCDM 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL   + + +     +       L+             +  NS   +      G+G
Sbjct: 178 KHPNELIPDDCLAYSGDSKRETWA---LSDGSGSATISAGRAVSANSGEVLASMAADGAG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +A+LP + V ++     L  +++D   P   +   YP       ++ +F  F
Sbjct: 235 VAMLPKFHVAEHLRTGRLAHVLQDWSPPDLWLTLYYPPYQALPPRIASFSKF 286


>gi|330807899|ref|YP_004352361.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376007|gb|AEA67357.1| Putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 304

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 13/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + D L  F V+ ++GSFT AA+QL  S+  +S++IS LE    + L  R  R L+LT  G
Sbjct: 3   EMDDLAAFAVLMKAGSFTQAAQQLGCSKGQLSKRISLLERRFSVVLLQRTTRRLSLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +  ++E  +  L       SG +R+   + LG+   +G L EF   YP++Q
Sbjct: 63  AALLPQAQALLVQVERARQALARLKDDISGPVRMTVPVSLGETFFEGLLMEFARTYPNVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L+N   D++ D  D AIR    I    L+ R L+  H    A+P YL+   EP + 
Sbjct: 123 IELELNNGYRDLTRDGFDLAIRSDAAI-DERLVARPLLAWHEMTCASPAYLERYGEPETP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           Q L +H  +       +      WL      +   R+S     N Y  + +  + G+GIA
Sbjct: 182 QALAEHRCLLNSHYSGR----EEWLYHQQHELLRVRVSGPFASNHYSLLKKAALAGAGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LP Y++ +   +  L  ++ D  T    +Y  +P       + +   +++     DW
Sbjct: 238 RLPSYLLHEELADGRLHWLLRDYQTRRMPMYLVHPYQGGLPKRTQVLADYLI----DW 291


>gi|28198337|ref|NP_778651.1| transcriptional regulator [Xylella fastidiosa Temecula1]
 gi|182680977|ref|YP_001829137.1| LysR family transcriptional regulator [Xylella fastidiosa M23]
 gi|28056407|gb|AAO28300.1| transcriptional regulator [Xylella fastidiosa Temecula1]
 gi|182631087|gb|ACB91863.1| transcriptional regulator, LysR family [Xylella fastidiosa M23]
 gi|307579444|gb|ADN63413.1| LysR family transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 301

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 134/300 (44%), Gaps = 5/300 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D +++F  V  +G F  A ++L L++S+I + I+ LE  +G++LF R  R  +LT
Sbjct: 1   MQNMFDGVQLFVEVVEAGGFAKAGKRLSLTRSTIGKAIARLEMRLGVQLFQRTTRVQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +        +L   +  L++   + +G+L ++  +  G+  +   L+ +   +P
Sbjct: 61  EDGQQYYERCLRAIKELRAGEAMLEQGRREVAGRLHVSLPVLFGRQCVAPILRTYAREHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   +  +D+  D  D A+R       ++L  R+L        A+P YL    +P
Sbjct: 121 QLELELNFSDHHVDLIADGFDLAVRNGPLGNGTTLRARRLGNQRKILCASPTYLAARGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H+L+T+          +         +  P  S L+ N    I    V G G
Sbjct: 181 HTLADLADHDLLTYCRNDRNMA--WTLPDATGALVDIPITSRLRCNDLEVIADTAVDGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +A LP +++ +      L+ I  D  +     +  +P A     + +   N +  +   +
Sbjct: 239 VAWLPYWLLMERMQRGELIGIWGDRPSAVIECHVVWPAAQHVPLRSRLAINLLAAELPKY 298


>gi|146291803|ref|YP_001182227.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145563493|gb|ABP74428.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 329

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  
Sbjct: 1   MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  ++ +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P +
Sbjct: 61  GSHFYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I   + +D+     D A  +   + +  L+ R + T  +  YA+P YL     P +
Sbjct: 121 TVEVISSAESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPEYLAAHGIPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QE++ HN+  F     K   +      +              NS    +++ + G GI 
Sbjct: 181 PQEIESHNVSLFRLSNGKIFNEL----WIGLEEEVRVRGNFCSNSVEVAVEFALQGRGIV 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P  +V    +   LV ++ ++       +  YP     +   + F +FI  + 
Sbjct: 237 YAPTEVVAEFVETGELVTLLPEIDAHQGECFLAYPSRRYVSLASRRFIDFIMQEL 291


>gi|153837436|ref|ZP_01990103.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149749236|gb|EDM60021.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 293

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L++F  V + GSFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT +
Sbjct: 1   MKIDDLKLFTKVVQLGSFTAAANALDLPRANVSRRIGELERYLGTQLFHRTTRSLSLTNK 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   +V   L++   +    S++  GK+++    +  ++ LQ  L EF   YP +
Sbjct: 61  GDAYYQDLQKVLTLLDSANQQASNESIEVRGKIKLGLLPETYEH-LQPILFEFQDQYPQV 119

Query: 123 QIQLI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +  ++N  ID+     D A+     +  S ++ RK++T+     A+P+YL+    P 
Sbjct: 120 ELDIRNINNGFIDMFQQGLDIALH-GGMLFDSDIVARKILTLDRCVVASPNYLQTHGTPA 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++ L  H  I F    P    D  W         +P+   L  N+   I    VL  GI
Sbjct: 179 TLEALSDHQCICF--RWPNGNVDNLWHFQEQNVALKPK---LISNNIGFIKSSTVLDRGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +P  +VK   ++  LV+++        T +  YP+        +     +
Sbjct: 234 SYIPKLLVKNELESGALVQVLSQYAVTEETGWLLYPQPKTLNQASRLLIEHL 285


>gi|295095911|emb|CBK85001.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 310

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 127/295 (43%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
                 L +F  V  + +F+  A +  +S S +SR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   HISIRALLIFIDVYETQNFSVVARREGISASQVSRVIHQLEDALGQQLFYRNTRAIMPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R    +   +E  + EL E + +PSG LRI   +  GQ  +   L   L  YP 
Sbjct: 66  SGHLFVRYARAMAGNMEDARRELDERAREPSGTLRINGPVFFGQRHIAPGLPGLLARYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L +  ID   D AD   R+   +  SS   R       H  A+P YL+    P 
Sbjct: 126 LSIELTLTDDFIDPHRDAADVIFRIGA-LTDSSFHARVFGQQFYHLAASPDYLQKHGAPE 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H+ + +                 +  +  P +  +  N+  +++   + G G+
Sbjct: 185 GPDDLSRHHCLVYRGSSGPNRWLIR--RPGEAWVHYPIVPLMTSNNAETLLIAALGGMGV 242

Query: 242 ALLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD++V +   +  LV ++ ++     T   T+   YP A      ++A  ++
Sbjct: 243 VLFPDWMVSERLKSGELVALLPEMECSINTEPLTIAAIYPNARHPPLNVRAVIDY 297


>gi|294666374|ref|ZP_06731621.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603871|gb|EFF47275.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 303

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 128/291 (43%), Gaps = 8/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R+F  +    SFT AA  + + +S+ ++ I+ +E  +G++L  R  R +  T 
Sbjct: 1   MDRFDAMRLFVRIVERRSFTAAANDMEIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+    +   ++  +   +   V P G LR+     L ++ L   L  F   YP 
Sbjct: 61  DGELFHQRCMRILDDVDDAEGGFRG--VAPKGLLRVEVQGTLARHFLLPGLPAFFAHYPQ 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +   ++ +D+  +  DC +R   P++ S L+ R++  +     A P YL+    P 
Sbjct: 119 IQLVMSESDRWVDLVEEGIDCVLRYG-PLRDSELVARRVAMLERLTCATPQYLQRFGLPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++ L+ H ++    +    +       T          S L V    S +    LG GI
Sbjct: 178 QLEALEHHRMVGLRSITTGVVTPLE-FQTAQGLRTFALPSPLSVTGTESYLAGIRLGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           A +P + V  +     LV I+ D   PS  V   Y  A + + +++ F ++
Sbjct: 237 AQVPRFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVFLDW 287


>gi|152985296|ref|YP_001348050.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960454|gb|ABR82479.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 301

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 123/272 (45%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    +    +   LE     L
Sbjct: 24  RQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGVVYRQRLERILDDLEAADAAL 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
                 PSG LR++  + L    L   +  FL  YPD++++L+L +   D+  +  D A+
Sbjct: 84  TSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELLLQDGRQDLIAEGIDLAL 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R    +  S L+ R L+ +     AAP YL+   +PL  + L +H  I F          
Sbjct: 144 RGSDRVADSGLVARPLLVLEHVLCAAPAYLRQHGQPLRPEALREHECIRFS----LSGHA 199

Query: 205 FNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIME 260
             W    D   I  P     +V+S L++    + G G++L+P   V+       LV ++ 
Sbjct: 200 DRWTFRKDHECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPRLYVQAELAEGRLVELLA 259

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D       ++  YP   +  GK + F +F+  
Sbjct: 260 DWKADETAIHAVYPS-RQLAGKTRVFLDFLTE 290


>gi|78063249|ref|YP_373157.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971134|gb|ABB12513.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 372

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 134/293 (45%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R+F  +    SFT AA+ L +S+++ +R +  LET +G+ L  R  R L  T +G 
Sbjct: 10  IRAMRIFTRIVEMNSFTRAAQALGISRATATRTVQELETALGMPLLVRTTRALRATPEGD 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   ++  +  ++ +++ PSG LR+     +   ++   L  F   +PD+ +
Sbjct: 70  AYYRRCVRITADVDELEASIRGAALHPSGPLRVELPAAVADTIVLPALGAFHARHPDLVL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +  +  D   D  DC++RL + +  SSL+ R+L  +     A+P YL     P ++ 
Sbjct: 130 TLGVSGRAADRVGDAIDCSVRLGE-LPDSSLVARRLGMLERVTCASPAYLDRHGVPRTLD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  ++   +  +   + ++L  VD  + + R+   + V+   + +   V G G+  
Sbjct: 189 DLAMHRAVSLSSVPGQRTAELDFL--VDGAVRKVRLDGIVSVDDEPAYLACGVHGLGLIQ 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P    +   D   L  ++      +  V   Y +    +  ++AF ++I  +
Sbjct: 247 PPRVAAQPLIDAGRLREVLPRWRPDAVAVSAVYVKRPHVSPGVRAFVDWIGER 299


>gi|107026998|ref|YP_624509.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691805|ref|YP_837338.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896372|gb|ABF79536.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649805|gb|ABK10445.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 334

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+F  +    SFT AA+ L +S+++ +R +  LE  +G+ L  R  R L  T
Sbjct: 1   MDNPIRAMRIFTRIVEMNSFTRAAQALGISRATATRTVQELEAALGMPLLVRTTRALRPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   +R    +   ++  +  ++ +++ PSG LR+     +   ++   L EF   +P
Sbjct: 61  PEGDAYYRRCVSITADVDELEASIRGAALHPSGPLRVELPASVASTIVLPALGEFHARHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L +  +  D   D  DC+IRL   +  SSL+ R+L ++     A+P YL     P
Sbjct: 121 DLELTLAVAGRAGDRIGDAIDCSIRLGA-LPDSSLVARRLGSLERVTCASPAYLDRFGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            +  +L  H  +    +  +   +  ++  VD  + + R+   + V+   + +   V G 
Sbjct: 180 RTPDDLGAHRAVGGSHVFGQRSAELEFV--VDDAVRKVRLDGIVSVDDEQAYLACGVHGL 237

Query: 240 GIALLPDYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ + P  +      D   L  ++      +  V   Y +    +  ++AF ++I  +
Sbjct: 238 GL-IQPTRVAAQPLIDAGRLREVLAGWQPDALAVSAVYVKRPHVSPGVRAFVDWIAER 294


>gi|319787805|ref|YP_004147280.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466317|gb|ADV28049.1| transcriptional regulator, LysR family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 302

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 124/293 (42%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D ++ F  VA +GSFT AA  L L+++++++ +  LE  + ++L  R  R +TLT  GS
Sbjct: 4   FDAMQAFVRVAETGSFTRAATDLGLARATVTQLVQQLEARLRVRLLDRTTRRVTLTADGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L+  +  L   +    G+LR+     L + ++   L  F   +P+I++
Sbjct: 64  AFLERALRLLADLDDAETGLPGQAAAARGRLRVDMPSPLARLVVVPALPAFHARHPEIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ +D+     DC +R    +   SL+ R+L  + +  YAAP YL+    P    
Sbjct: 124 VLGASDRVVDLMGANVDCVVR-GGELADGSLVARRLARLALGVYAAPAYLERHGTPAHPG 182

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL    H  + F             L      +       L V+   +     + G G+A
Sbjct: 183 ELEGAAHRSVGF-LWASSGRPLQPVLRRGTEQVQVRARPRLAVDDGNAYQAAVLAGLGVA 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +P Y+   +     LV +  D       +   +    +   +L+AF +++  
Sbjct: 242 WMPRYMADAHVARGELVELFADWRLAPMPLSLAWRPRPQVGARLRAFIDWMVE 294


>gi|323495684|ref|ZP_08100754.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323319151|gb|EGA72092.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 302

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 132/292 (45%), Gaps = 10/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  SGSF+  A++L +S SS+SR I+ LE+ +  KL  R  R + L+  G 
Sbjct: 10  LSEMAIFVNVVESGSFSQTAKKLGVSPSSVSRSITRLESALEEKLLERTTRQMRLSSTGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++ + S++ +  +      Q      SG LR+A    L + +L   + +F+  YP++ +
Sbjct: 70  EVYSLCSDMMNSAKMAVSAAQVDKTDVSGSLRVAAPKALSRQVLMPFILDFIDDYPNVSL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + +  ID   D  D  I +        LI + L    +   A+P Y++    P+  Q
Sbjct: 130 QLKVADHYIDPIGDEVDIIIMITDK-PMEGLIAKPLGHCRLVLCASPEYIEQYGMPIHPQ 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++  HN +  G+     + +F      ++ +         VN      +  + G G+++ 
Sbjct: 189 DISGHNCLCLGENPRDRVWEFT---NNNKKVSINVNGSFIVNHSEIRREAVLRGVGLSVF 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           P++ ++   D+  ++ ++ D          +   Y ++     ++K F  +I
Sbjct: 246 PEFAIQSYIDSGQVIEVLRDWHVGGNYQGKIIAQYAQSKYIPSQIKTFIEYI 297


>gi|292489721|ref|YP_003532611.1| HTH-type transcriptional regulator ptxR [Erwinia amylovora
           CFBP1430]
 gi|292898071|ref|YP_003537440.1| LysR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291197919|emb|CBJ45020.1| LysR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291555158|emb|CBA23345.1| HTH-type transcriptional regulator ptxR [Erwinia amylovora
           CFBP1430]
          Length = 301

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 129/288 (44%), Gaps = 7/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V  + S+T AA+ L L++SS+S++IS LE  +G KL  R  R + +TE G
Sbjct: 6   NLHGMFIFAKVVETLSYTEAAKALGLAKSSVSKEISALEVRLGAKLLQRTTRRIQVTEVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     + H++++    +++   +P G LR+   +  G   +   L  F+     + 
Sbjct: 66  MTYYHYCYRILHEVKSADRFIRQFHEEPGGSLRVVAPVTFGCQCIVPALNRFIASNIHVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ ++   D  D AI + + +       R L+ I    YAAP YL N     S 
Sbjct: 126 VDLDLTDRPLNFEDDRIDIAIAITRDLPDHR-HYRPLMDIAWGLYAAPDYLLNRTPVTSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I F    P       +     +   E R S  + N+ ++++   V  +GIA 
Sbjct: 185 DDLQRHEFILFRG--PAHTISLPFRKEKQKKDIEVR-SRFRANNSIALLNSAVAETGIAY 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LP YI     ++  LVR++ +     +  Y         + +++ F  
Sbjct: 242 LPSYIAGEAVESGKLVRLLPEWEMDIYKSYVLIKSDSFVSPRVRLFIE 289


>gi|190150118|ref|YP_001968643.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307263454|ref|ZP_07545069.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915249|gb|ACE61501.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871097|gb|EFN02826.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 295

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 124/290 (42%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  
Sbjct: 1   MDLNNLRLFVAVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTAL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+         L     E      + SG LRI+T            + EF   YP +
Sbjct: 61  GLQLYEKVYLSLDNLTQATQEFIGEQQELSGYLRISTVSACEPIW--AAIAEFQAEYPQV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     ++ +D+  D  D A R+   + + ++I RK++ ++    A P +L     P +
Sbjct: 119 KVHCQATDRVLDLVEDGIDIAFRMGD-LHTENVIARKMMDLNAVLVAHPDFLARHGTPKT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L       +     +  +    L   ++ +    I     N   +I         I 
Sbjct: 178 PQDLTALPFACWA----RAGQKSATLQLGEQAVKIEPI--FTSNDVYAIAHQAKSAHAIC 231

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LPDY+ ++      LV +M D  T ++ ++  YP     +  +K F  F
Sbjct: 232 QLPDYMAQELTEKFGLVELMSDYQTSTYPIHAIYPAHRHPSAIMKTFLGF 281


>gi|117619783|ref|YP_855742.1| putative HTH-type transcriptional regulator YcjZ [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561190|gb|ABK38138.1| putative HTH-type transcriptional regulator YcjZ [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 297

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 126/298 (42%), Gaps = 7/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + ++L  F VVAR  SFT AA QL  SQS+IS+ +  LE  +G+KL  R  R +T T
Sbjct: 1   MKENLNELTTFMVVAREQSFTRAAAQLGTSQSAISQTVKTLEQRLGLKLLSRTTRSVTPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L  +      ++++   +L     KP+G +RI       + +L   +  FL  YP
Sbjct: 61  EAGERLIALVGPALAQIDSGLSQLTALRDKPAGTIRITADEYAIRAVLWPKISAFLHHYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  D   +DI  +  D  +R    I    +       I M   AAP YL     P
Sbjct: 121 DIRVELSTDYGLVDIVAERYDAGVRRGGLIAKDMIATPISPEIKMLVAAAPRYLAAHGRP 180

Query: 181 LSIQELD-KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              QE+   H  I     +P     F+W      R +       L  NS  ++++  + G
Sbjct: 181 SRPQEIASAHQCINL--RLPTQGGFFSWSFLEGGRELKIRGEGQLVFNSIGNVLEAALDG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+A LP  + +    +  L  ++          Y  Y   L+ +         +  +
Sbjct: 239 YGLAYLPQSMAEPYLADGRLEEVLAGYNMVHPGYYLYYTSRLQASPAFSLLLEALRHR 296


>gi|308051406|ref|YP_003914972.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307633596|gb|ADN77898.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 314

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 131/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L +F  V   GSF+ A  +L L +  +S QIS LE  + ++L  R  R L++T +G 
Sbjct: 8   IRRLAIFATVVEQGSFSAAGRKLGLGRGKVSEQISALEQALSVRLLQRSTRQLSVTAEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+R   ++  +      E+Q+   +P G+LR+ TT D+ Q +L   L  F   YP IQ+
Sbjct: 68  VLYRHCRDLLPQASQGLREVQDLGPEPMGRLRLTTTSDVAQQVLSPFLSRFCQQYPGIQL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +++  +  D AIR+  P+  SS++  +L  + M  YAA  YL     P S+ 
Sbjct: 128 DLQLADAVLNLVEEDIDIAIRIGTPV-DSSMVGIELGALPMGLYAATSYLAQWGVPESLP 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +    +        +    V +P G P     + ++          G GI LL
Sbjct: 187 DLSAHRGVQMTRMPNLSTLMLSNDEGVSQPAGLPVFH--RTDTPAGNATLVEQGLGIGLL 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P + +        +  ++         +   +P   +   + + F + +    RDW
Sbjct: 245 PHFTLNQAVSEGRVRPVLPQWQYRQLAITLLFPSRAQLPRRSRLFIDAL----RDW 296


>gi|307322609|ref|ZP_07601947.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306891747|gb|EFN22595.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 297

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 130/295 (44%), Gaps = 9/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F  +A SGS T AA +L+ S  ++SR ++ LE +VG++L +R  R   L+E G 
Sbjct: 4   LEDLEAFIHIAESGSLTRAATRLNRSLQAVSRSLTSLEVDVGLQLVHRTTRHSALSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R       ++   Q+E       PSG LR+   +  G + L   + E++  YP  ++
Sbjct: 64  AFYRRVKPAVLEIREAQLEAAGRRTGPSGILRVGAPMLFGPDFLVPIVAEYIESYPQAEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D++ +  D  +R+   +  S+L  ++L  +    + AP Y      P    
Sbjct: 124 DLSLTDAFVDLASEGIDVVVRIAD-LPDSNLQSKRLGALRRVVFGAPSYFARNGRPEHPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  I    +         W   +D       +    + N+  +I      G G+  
Sbjct: 183 ELRQHACI----VRTIGNRPGQWAFQIDGKRRMVGVRGSFRSNAMAAIYSAVRSGLGLGY 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            P + ++   D   +  ++++       ++  + E+ +   K++AF + + ++ R
Sbjct: 239 SPLWQIRHLVDAGQVEIVLQEFEPKPVPIHALWQESTRPPAKVRAFVDLLAMRLR 293


>gi|206577630|ref|YP_002235946.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206566688|gb|ACI08464.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 304

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +   V   GS + AA  L++  +++SR I  LE+ +G++L  R  R LTLT+
Sbjct: 1   MDRLSAMALLVKVTELGSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  ++E  + +      +P G+L I+     G+  +   + EF+  YP 
Sbjct: 61  AGVDYVAAARRILEEVENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L+L +++ D+  D+ D A+R+   +  SS++  +L T+ + A A P  L    EP 
Sbjct: 121 IRVRLLLSDRNADLVSDHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L    +I     +P     F      D+ I  P +  L V +  S      LG G+
Sbjct: 180 RPRDLAALPIIRIESPMPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGV 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A L  Y   D   +  L  ++E+V      V+  Y        KL+ F +F     R 
Sbjct: 238 ARLLHYQALDGLRHGELRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDFAAPALRQ 295


>gi|294139722|ref|YP_003555700.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293326191|dbj|BAJ00922.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 292

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 141/296 (47%), Gaps = 15/296 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +W  +  F     + SFT AA++L+ S + ISR++  LE E+  +LFYR  R LTLT
Sbjct: 1   MISNWVGVTEFICSVENQSFTKAAKRLNTSTAQISRKVKHLEAELSTQLFYRSTRLLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   ++ + +   +L   Q  L +      G +RI      G  ++   + +FLL Y 
Sbjct: 61  EEGKIYYQYSKKANTELLNAQSMLSQYQSSAEGSIRITAPTTYGDQIIAPIVNDFLLKYE 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I LIL N+ +++  D  D A+RL   ++ SSLI +KL T       +P Y      P
Sbjct: 121 QIKIDLILTNQRVNLIEDGIDLAVRLGN-LEDSSLICKKLGTRKKSVCVSPEYANKYGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++EL   N I         + D+ W     +         L+ N+ +++++  V   G
Sbjct: 180 KDLEELKNFNCI-------NGLTDY-WSFKTGK---VKVSGRLRCNNSMAVLKAGVQHLG 228

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  LPDY +K++     L++I+ +       V+  YP   + +  +K F + +  +
Sbjct: 229 LIQLPDYHLKEHLKNNSLIQILTEYEAEKEGVWALYPNTRQPSYNVKLFLDCLIKR 284


>gi|241518471|ref|YP_002979099.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862884|gb|ACS60548.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 311

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 135/298 (45%), Gaps = 8/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     + VF     +G F+ A  +L+LS+SS+ R ++ LE  + ++LF R  R  ++T
Sbjct: 1   MTISLSDIPVFVCAVDTGGFSEAGRRLNLSRSSVGRAVARLEAGLNVRLFDRTTRHQSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +        +L   +  L   S  P GKLR++  +  G+  +   L       P
Sbjct: 61  ADGQLFYEHCQRAMAELRAVEAALDSGSSAPRGKLRVSMPVLFGRMCVAPILTRLARENP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++ +D+  D  D AIR   P  ++    R++       YAAP YL+    P
Sbjct: 121 GLELELSFSDRKVDLLEDGFDLAIRNGSPGNAAGTRIRRVGHEETMLYAAPGYLERQGVP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
            +I ELD H+ +T+     +     +W   V+  + E   +S L+ +   +I      G 
Sbjct: 181 EAISELDAHDTVTYS----RAGRVQSWTLEVEGVVHEFNPVSRLRFDDIDAIADAATEGF 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+A LP ++VK   +   LV +M  +      V+  +P+      +++A  + +  + 
Sbjct: 237 GLAWLPFWLVKKRVETGELVPVMRQMPPYVSEVWALWPDGAHLPTRVRAAIDALVTEL 294


>gi|293390878|ref|ZP_06635212.1| LysR protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951412|gb|EFE01531.1| LysR protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 296

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 131/289 (45%), Gaps = 9/289 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V ++GSF  AA +L ++ S++S+ +  LE  +G++L  R  R ++ T+ G KL   
Sbjct: 13  YFIQVVQAGSFAKAANKLGVTSSALSQNVKSLEKSLGLRLLNRTTRSISPTDAGEKLLAQ 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +  +H +     +L +    P G +RI T+      LL   LK  +  YP+++I+++++
Sbjct: 73  ITPHFHAIVGGLNQLDDWRNSPLGTIRINTSEVAANLLLYPKLKTLMQRYPELKIEMVVE 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +DI     D  +RL   +    +  +    + M   A+P YL+      +I +L  H
Sbjct: 133 NRWVDIVEQGFDMGVRLGYALYKDMIAVKISDPVRMAVVASPDYLRGKPSVQAIADLPAH 192

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            LI            + +    +R   +P      VN+ L   Q  + G GIA LP  +V
Sbjct: 193 LLIGLRLSNQHGEAHWEFQHKGERITFQPE-PHFSVNNGL-RHQAALDGLGIAWLPKIVV 250

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + +     LV ++++       +Y  YP    ++   +AF   +    R
Sbjct: 251 EKDLEAGRLVELLDEYAMEYEPLYLYYPNRQGHS---RAF-ELVVEALR 295


>gi|167589844|ref|ZP_02382232.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 324

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 129/297 (43%), Gaps = 11/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F  V  +GSF+  A+++ +S S+++R++S +E  +G+ L +R    +TLTE GS
Sbjct: 13  LGAMRAFVRVVETGSFSAVAKEMRVSTSTVARKVSAIEEALGVPLLHRSTHSVTLTEAGS 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H     +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+
Sbjct: 73  IYHERAVTLIADLDDTLRVVAELNARPSGPLKLTAPVAFGRRHLAPLIAPFLAQYPTIQL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +   D+     D  I   +     +L+ ++L        A+P YL  C  P    
Sbjct: 133 DVRLTDNHNDLVAGGFDLDIHEGENYLD-NLVAQRLSRNDSILCASPAYLDRCGRPAEPH 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  HN + +  + P+    +  +    R    P    L  +    ++     G GIA  
Sbjct: 192 ELASHNCLRY--VHPEGDPRWELVDADARHSILP-AGNLVSDHSELLLDATRAGLGIAEF 248

Query: 245 PDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             ++V+D   +  L  ++             +Y  Y    +++ KL+  R F+  + 
Sbjct: 249 EIWLVRDLLASGQLEVVLPRYRLQNKLTGDFIYMAYLANRRSSAKLRVLREFLAERL 305


>gi|91224528|ref|ZP_01259790.1| Putative transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91190870|gb|EAS77137.1| Putative transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 294

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 132/295 (44%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +   V  SG F+ AA+ L +  + +SR +S +E+++G+ L  R  R + +TE+G +
Sbjct: 6   DELEILMAVVDSGGFSSAADALGIQVARVSRAVSKVESQLGVTLLNRTTRRVEVTEEGHQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +++  + E+      P G+LR+        + L   ++ F   YPDIQ+ 
Sbjct: 66  FVEAVRLGLLQIQQAEEEIITRGELPKGRLRVDAASPFVLHQLVPLIQPFKEAYPDIQLD 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ + +  S+L  + L T  +   A P YL     P ++ +
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGR-LSDSTLHAKPLGTSPLFIVATPGYLSKRGFPEAVSD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HNLI F                ++          +  +S  ++ Q  + G+GIA L 
Sbjct: 185 LRSHNLIGFSGAKVLNQWPLRGFEMIE--------PDILSSSGETVRQLVLAGNGIACLS 236

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++VKD+     LV + E     +     V   + ++   + ++ AF +FI  + 
Sbjct: 237 GFMVKDDLDSGRLVALFESEKITNTGREQVNAVFYKSSSVSKRISAFIDFIQPRL 291


>gi|15837734|ref|NP_298422.1| LysR family transcriptional regulator [Xylella fastidiosa 9a5c]
 gi|9106094|gb|AAF83942.1|AE003949_6 transcriptional regulator (LysR family) [Xylella fastidiosa 9a5c]
          Length = 301

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 135/300 (45%), Gaps = 5/300 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D +++F  V  +G F  A ++L L++S+I + I+ LE  +G++LF R  R  +LT
Sbjct: 1   MQNMFDGVQLFVEVVEAGGFAKAGKRLSLTRSTIGKAIARLEMRLGVQLFQRTTRVQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +        +L   +  L++   + +G+L ++  +  G++ +   L+ +   +P
Sbjct: 61  EDGQQYYERCLRAIKELRAGEAMLEQGRREVAGQLHVSLPVLFGRHCVAPILRTYAREHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   +  +D+  D  D A+R       ++L  R+L        A+P YL    +P
Sbjct: 121 QLELELNFSDHHVDLIADGFDLAVRNGPLGNGTTLRARRLGNQRKILCASPIYLAARGKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L  H+L+T+          +         +  P  S L+ N    I    V G G
Sbjct: 181 HTLADLADHDLLTYCRNDRNMA--WTLPDATGALVDIPITSRLRCNDLEVIADTAVDGMG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +A LP +++ +      L+ I  D  +     +  +P A     + +   N +  +   +
Sbjct: 239 VAWLPYWLLMERMQRGELIGIWGDRPSAVMECHVVWPAAQHVPLRSRLAINLLAAELPKY 298


>gi|218891474|ref|YP_002440341.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218771700|emb|CAW27474.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 301

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 123/272 (45%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    +    +   LE     L
Sbjct: 24  RQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYRQRLERILDDLEAADAAL 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
                 PSG LR++  + L    L   +  FL  YPD++++L+L +   D+  +  D A+
Sbjct: 84  TSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELLLQDGRQDLIAEGIDLAL 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R    +  S L+ R L+ +     AAP YL    +PL  + L +H  I F          
Sbjct: 144 RGSDRVADSGLVARPLLILEHVLCAAPAYLGQHGQPLRPEALREHECIRFS----LSGHA 199

Query: 205 FNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIME 260
             W    +R  I  P     +V+S L++    + G G++L+P   V+       LV ++ 
Sbjct: 200 DRWTFRKERECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPRLYVQAELAEGRLVELLA 259

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D       ++  YP   +  GK + F +F+  
Sbjct: 260 DWKADETAIHAVYPS-RQLAGKTRVFLDFLTE 290


>gi|206580000|ref|YP_002240989.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569058|gb|ACI10834.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 315

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 132/292 (45%), Gaps = 9/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  VA  GSFT  A  L  + S +SR ++ LET +G +L  R  R ++LTE GS
Sbjct: 8   LADVEVFLAVAERGSFTAGAVALSSTPSVLSRAVTRLETRLGCQLLRRSTRRISLTEAGS 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  + +  L+  + E Q      SG+++++     G   L   L  +  L+PD+QI
Sbjct: 68  AYLSQVRQAFEVLDNAERETQGQKGALSGRVKLSAPTTWGHYRLPARLALYRQLHPDVQI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           +L + N+++DI  +  D  +R    +  S L+ +KL    +   A+P YL++   PLS I
Sbjct: 128 ELNITNRNVDIIAEGFDLVVRQGH-LPDSGLVAKKLEDAALCLVASPAYLRSTARPLSKI 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGI 241
            +L  H+ +TF  ++P   +   W+   D       P  S    +  L ++   + G+GI
Sbjct: 187 ADLRHHSCLTF--IMPATGKVAEWVFREDGRDISWLPTSSLHVSDDVLGVVSLALQGAGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                +IV++      LV ++      S      YP     +   +A    +
Sbjct: 245 CQSYAFIVQEAIARGELVPVLPAFAGRSRPFSVLYPPHRSQSAAARALITLL 296


>gi|194426165|ref|ZP_03058720.1| glycine cleavage system transcriptional activator [Escherichia coli
           B171]
 gi|194415473|gb|EDX31740.1| glycine cleavage system transcriptional activator [Escherichia coli
           B171]
 gi|323159875|gb|EFZ45845.1| glycine cleavage system transcriptional activator [Escherichia coli
           E128010]
          Length = 305

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAKHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAALGKIAAFRQWILAKA 292


>gi|115360159|ref|YP_777297.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285447|gb|ABI90963.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 312

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 123/298 (41%), Gaps = 6/298 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    E+    +   +    G LR++  ID G  ++   +      +P 
Sbjct: 66  AGRAFYDACRDIVRATESALDAVSSDAGPLRGTLRVSVPIDYGALVVAPAIVALRDAHPG 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ I +++ +D+  D  D AIRL + ++ S+    +L        A+P ++     P 
Sbjct: 126 LDVEQIANDRVVDLVADNLDVAIRLGR-LEDSNYRAVQLGQYEKWVVASPAFVARHGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +      P          T          + +  N+  +     + G G 
Sbjct: 185 DPDALAALPFVMLS--TPSRPHTLELDDTSGGHASVRCTAPVVSNTATACRAIVLAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             L D+   ++     LVR++    +    ++  YP     +  ++AF + +  +  +
Sbjct: 243 GFLTDFSTAEDIAAGRLVRLLPAWRSALAGIHAVYPSTRLPSRTVRAFIDAMKARIAE 300


>gi|225851896|ref|YP_002732129.1| LysR family transcriptional regulator [Brucella melitensis ATCC
           23457]
 gi|256044075|ref|ZP_05446986.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256112870|ref|ZP_05453791.1| LysR family transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|256264593|ref|ZP_05467125.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
 gi|260563436|ref|ZP_05833922.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M]
 gi|265990489|ref|ZP_06103046.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994317|ref|ZP_06106874.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|225640261|gb|ACO00175.1| transcriptional regulator, LysR family protein [Brucella melitensis
           ATCC 23457]
 gi|260153452|gb|EEW88544.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M]
 gi|262765430|gb|EEZ11219.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|263001273|gb|EEZ13848.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094956|gb|EEZ18664.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
 gi|326538108|gb|ADZ86323.1| transcriptional regulator, LysR family protein [Brucella melitensis
           M5-90]
          Length = 300

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 131/300 (43%), Gaps = 13/300 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LR    V   G+ + A      S +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLR----VVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPT 55

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 56  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYP 115

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 116 DIEVRLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTP 174

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S + L  D+H+ +      P   E +  L T +             +    + Q+ + G
Sbjct: 175 QSPEALLSDRHHCLLL--RFPSSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGG 232

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P + VK+   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 233 RGIINKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 292


>gi|307261270|ref|ZP_07542945.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869001|gb|EFN00803.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 295

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  
Sbjct: 1   MDLNNLRLFVAVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTTL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+         L     +      + SG LRI+T            + EF   YP +
Sbjct: 61  GLQLYEKVYLSLDNLTQATQDFIGEQQELSGYLRISTVSACEPIW--AAIAEFQAEYPQV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     ++ +D+  D  D A R+   + + ++I RK++ ++    A P +L     P +
Sbjct: 119 KVHCQATDRVLDLVEDGIDIAFRMGD-LHTENVIARKMMDLNAVLVAHPDFLARHGTPKT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L       +     +  +    L   ++ +    I     N   +I         I 
Sbjct: 178 PQDLTALPFACWA----RAGQKSATLQLGEQAVKIEPI--FTSNDVYAIAHQAKSAHAIC 231

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LPDY+ ++      LV +M D  T ++ ++  YP     +  +K F  F
Sbjct: 232 QLPDYMAQELTEKFGLVELMSDYQTSTYPIHAIYPAHRHPSAIMKTFLGF 281


>gi|258623589|ref|ZP_05718584.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258584135|gb|EEW08889.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 296

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 131/301 (43%), Gaps = 16/301 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 61  AGEEALQRCEQILHQTMELEMRALEQSGSLHGSIRISAPIGLTQNMLLDAVQTFTDLHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 121 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATADYLAQHAPIK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           + Q+L +HN +         +    W    D       ++  ++ N   ++ +  +   G
Sbjct: 180 TPQDLTEHNCLVH-------ISGNKWDFVRDSEHFSVLVNGNIRANDMGTLCRAALNHKG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  LP  +      +  L  ++ D   PS  ++  Y      T  ++ F +F+  +   W
Sbjct: 233 VIRLPCDLANPLLQSGQLQALLPDYHLPSSAIWAVYLSRSYQTPLVRQFIDFLAER---W 289

Query: 298 K 298
           +
Sbjct: 290 Q 290


>gi|116052199|ref|YP_788957.1| LysR family transcription regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587420|gb|ABJ13435.1| possible LysR family transcription regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 309

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 127/288 (44%), Gaps = 4/288 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  VA +GSF+ AAE+LHL+ S++S+ I+ LE  +G++LF R  R L LT+ G+
Sbjct: 7   LKGIDVFVCVAEAGSFSAAAERLHLTASAVSKAIARLEDRLGLRLFERTTRRLALTDAGT 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  S V   LE +++ L     +  G++R+      G+  +   + +F   +  +  
Sbjct: 67  TFYRTCSRVLGDLEESELALHAEHHQTGGRIRLDLPASYGRLHVLPVVLDFARRHALLVP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +   +  ID      D  +R+  P I   +L  R L    +   AAP YL    EP  +
Sbjct: 127 HISFSDDFIDPVSQGIDILVRIGGPDIWPETLGHRYLGAQRLVFCAAPAYLAAHGEPRDV 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H+ + +G                         + + +     ++Q  +   GI  
Sbjct: 187 EELAAHDCVLYGQGDGLTTPWNFPGHQPGELERRVMPTRIAIGDGEGVVQALLASHGIGQ 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LP ++V    ++  L  ++  + +   ++   + +  +N  K+ A  +
Sbjct: 247 LPTWLVSRHLESGRLREVLPQLASDGLSINLAWQKRRENLPKVGALLD 294


>gi|254718541|ref|ZP_05180352.1| LysR family transcriptional regulator [Brucella sp. 83/13]
 gi|265983512|ref|ZP_06096247.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306838462|ref|ZP_07471304.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|264662104|gb|EEZ32365.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306406466|gb|EFM62703.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 300

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 131/300 (43%), Gaps = 13/300 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D LR    V   G+ + A      S +  S +I  LE  +G++LF R  R LT T
Sbjct: 1   MSY-LDNLR----VVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPT 55

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +    ++   ++  +  + E +  P G +RI   +  G+ L+   + EF   YP
Sbjct: 56  EHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYP 115

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L L + ++DI  +  D A +L   +++S+L  R ++       AAP YL+    P
Sbjct: 116 DIEVRLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTP 174

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S + L  D+H+ +      P   E +  L T +             +    + Q+ + G
Sbjct: 175 QSPEALLSDRHHCLLL--RFPGSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGG 232

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P + VK+   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 233 RGIINKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 292


>gi|253687323|ref|YP_003016513.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753901|gb|ACT11977.1| transcriptional regulator, LysR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 307

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 126/293 (43%), Gaps = 12/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSSLNDATRKLQSRSA--KGALTVSLLPSFAIHWLVPRLSSFNSDYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D D   D  D AI   +      L   KL   ++    +P  L       +  
Sbjct: 126 RIQAVDRDEDRLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPALLTGSHPLKTPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   D   +    +     V   + +  I     +    ++Q  + G G+AL 
Sbjct: 185 DLVAHTLLH--DASRRDWLSYTRQLGVQINVQQGPI----FSHSAMVLQAAIHGQGVALA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR++I  +A
Sbjct: 239 NNVMAQTEIEAGRLVCPFNDVLVSRNAFYLVCHDSQAELGKIAAFRHWILARA 291


>gi|212709072|ref|ZP_03317200.1| hypothetical protein PROVALCAL_00105 [Providencia alcalifaciens DSM
           30120]
 gi|212687984|gb|EEB47512.1| hypothetical protein PROVALCAL_00105 [Providencia alcalifaciens DSM
           30120]
          Length = 314

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 135/289 (46%), Gaps = 10/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +RVF  VAR  SF+ AAE L +S + IS++I  LE  +G  LF+R+AR + LT +G 
Sbjct: 7   LEDIRVFVTVARLMSFSQAAELLLVSPAYISKRIKLLEENLGQTLFFRNARAIQLTPEGK 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            + R +  +  +LE  Q ELQ    +  G+LRI+ +   G   L   +      YP + I
Sbjct: 67  IVLRSSELLLEELERMQGELQACRDEIRGELRISCSTGFGSTYLNPFILALRADYPILGI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ IDI  +  D  I +   I     I R+L   +    A+P Y++   +P   Q
Sbjct: 127 DLTLTDRSIDIISENIDLDICIGGTISDQ-FIARRLARNNRVLCASPAYIQKYGQPSLPQ 185

Query: 185 ELDK-HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           EL++ H+ I   +   +      W L      +     S L VN+     Q+C+ G GI 
Sbjct: 186 ELEQKHSCIAIKE---RNQAPAIWKLEHQQESMTITPNSKLMVNNGEVAKQWCLSGEGIL 242

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           L   + V     +  LVR++         V+  Y  +L+N+  L+ F  
Sbjct: 243 LRSLWSVLPELQSGKLVRVLPQWHQ-GADVFAVYSRSLRNSASLRVFIE 290


>gi|227115332|ref|ZP_03828988.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 300

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 15/294 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +GS   AA    +S +++S+ +S LET +G++L  R  R +TLTE G +     
Sbjct: 10  FIRVVENGSIAAAARAKGMSPAAVSQSLSRLETHLGVRLISRTTRSMTLTENGKRYFEKV 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             + H +E    +   S  K  G L IATT   G+ ++   +  F   +PDI I+LI  +
Sbjct: 70  RHIPHDIELA-SQAAASETKLQGPLCIATTAAFGRYVIAPLMPAFKESFPDIDIELISTD 128

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           ++++  ++  D +IR+   +    LI RK+ ++     AA  YL     P + +EL +H 
Sbjct: 129 RNVNHRLEGVDVSIRIEAQLNDQ-LIARKIASLPFIFCAAQAYLDRAGTPQTPEELSQHA 187

Query: 191 LITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            + F    P       W   V  +P+          +    I +    G G+  L  ++ 
Sbjct: 188 CLVF--RYPTDGRFLPWTFMVNGQPVNVKLNPKFISDDIDIIAKIAANGGGVTRLASFVA 245

Query: 250 K---DNPNLVRIM-------EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +   D+  L  +          V +    +Y C  E      K++AF  F+  +
Sbjct: 246 QPLIDSGQLTPLFCSDRSSGNHVESLPMNIYACVNERSALNSKVRAFIAFLEAE 299


>gi|90579285|ref|ZP_01235095.1| putative transcriptional regulator [Vibrio angustum S14]
 gi|90440118|gb|EAS65299.1| putative transcriptional regulator [Vibrio angustum S14]
          Length = 294

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F +V  +GS+T A+ +  +  ++++R+I  LE  + I+L  RHAR L+LTE 
Sbjct: 1   MKLDDLNLFRMVVENGSYTAASRKTQVPVATLTRRIQALEEGLNIRLLNRHARKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K +   + +  +L  T   + E     +GKLRIA   ++ + +LQ  L  F+L +P I
Sbjct: 61  GQKFYHDCAPLLQQLLDTTEHISEECKGAAGKLRIAAPTNITKVMLQPLLNAFMLEHPAI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL + N+   +     D   R+  P + S+LI R++  +     A+P YLK   EP  
Sbjct: 121 SIQLYMSNEPDQLDPTDWDVMFRIG-PQRDSTLIARRINEVKDILVASPEYLKKNPEPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L  H L+    L+   + + N        +        + +    + + C  G GI 
Sbjct: 180 AQDLHDHVLLKGNPLLRWRLNNHN-----GETVTINERGRFEASELNVVRKACCAGLGIT 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L+PD +++       + +++++       VY  Y        KL+ F +F
Sbjct: 235 LMPDVMLEKYIAAGEVTQVLKNWSANPRDVYLIYNHRDYQPEKLRLFIDF 284


>gi|87120076|ref|ZP_01075972.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86164778|gb|EAQ66047.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 306

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 131/293 (44%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +++R+F  VA+  SFT AAE L + +S++S ++S LE  +GI+L  R  R + LTE G
Sbjct: 11  DLNQIRIFTHVAQLASFTKAAEVLGIEKSTVSAKVSQLEASLGIRLLERTTRSVRLTEAG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +  + L+     +   S +PSG +R     +L   +L   ++ FL  YP + 
Sbjct: 71  RDYLAYCEQALNTLQQGDDYIHSLSGEPSGTIRFCAPHNLIDFILSSVIEPFLTCYPKVN 130

Query: 124 IQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++   N D        D AIR  R  I+ +SLI R L         +P  L     P +
Sbjct: 131 LEIHQVNGDEGFLSGNYDLAIRNHRGEIKDTSLICRPLFESQWVFVISPKQLDEFGYPET 190

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L     I   +       D + +    +     R     V++  +++    LG G  
Sbjct: 191 PEHLLSQPSIGLKNASTNKTYDPHLIWQDQKLNFRHR---FAVDNMRTVIASIKLGLGFG 247

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++P  +VK+      LV I++D++ P  ++Y  YP  +    KL  F + +  
Sbjct: 248 MVPKNMVKEELAQGELVEIIKDIVIPPTSLYLIYPSRVGQPAKLIKFIDALMQ 300


>gi|314947141|gb|ADT64691.1| LysR family transcriptional regulator [Alcaligenes faecalis]
          Length = 313

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 127/294 (43%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+ + GS+T AA +L +S++++S+ I+ LE   G+ L  R  R + LTE G 
Sbjct: 10  WSHLHWLVVLEQQGSYTAAAARLGVSKAAMSQHIAELERAAGVPLVRRTTRSMRLTEAGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T   + ++  +   +++ S  P G LR+   + L +  L   L EF    P++++
Sbjct: 70  RLVDDTRAPFERIAHSFAGVRDLSGVPRGLLRVTAPVALARQQLVPRLAEFTRKNPEVRL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++   ++M+  D AIR    +  +  +   L        A+  YL+  + P + +
Sbjct: 130 ELELSDRISSLAMEGFDLAIRHAASVPDTH-VAWPLCDTRSVVVASRAYLRRHKAPKTPE 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            L  H+ + +          F  L+       +          N+  ++    + G GIA
Sbjct: 189 ALSAHDCLHYPRAQETPTWTFEPLSGRGDAERVTVAVAGPFSANNSEALRDAAIAGLGIA 248

Query: 243 LLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFI 290
           LLPD+  +       LV ++         +  +Y   P A      + AF  F+
Sbjct: 249 LLPDFSAQAALKAGKLVEVLPGWKPVGTFAEQLYAVRPYASHVPMAVSAFVGFL 302


>gi|49085516|gb|AAT51284.1| PA2417 [synthetic construct]
          Length = 313

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 124/298 (41%), Gaps = 6/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L ++  V   G F  A   L + +S+ISR+++ LE  +G++L  R  R   +TE 
Sbjct: 7   FDLNALFIYAKVVEHGGFAPAGRVLGIPKSTISRKVAQLEARLGVRLVQRSTRQFQVTEI 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R    +  + E  +  ++++  +P G +R+  +  L    L   L  F+  YP++
Sbjct: 67  GQAYYRHCVAMTVEAEAAEDVIEQNRSEPCGMVRLTCSTPLLHFELAPMLARFMAQYPNV 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +   N+ +D+  +  D ++ LR  P++ S L+ + L        A+P  L   R P 
Sbjct: 127 ELYVKTFNRRVDVIAEGYDISLSLRFPPLEDSDLVMKVLARSPQVLVASPELLARYRPPE 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     + +     +       +              L  +   ++ Q  + G GI
Sbjct: 187 LPADLSAMPYVGWER--SRLDGSLRLVGADGSSAALNLRPQLLSDDLGTLRQAVLEGVGI 244

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +V  +     LVR++ +       V   +P        ++A  +F+     D
Sbjct: 245 GGLPLCVVSRDLAERRLVRVLPEWTPVEGMVVAMFPSRRGLLPSVRALIDFLAAGFAD 302


>gi|149912095|ref|ZP_01900684.1| Putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
 gi|149804832|gb|EDM64871.1| Putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
          Length = 293

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 130/295 (44%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +   V  SG F+ AAE L +  + +SR +S +E ++G+ +  R  R + LT++G +
Sbjct: 6   DDLEILLTVVDSGGFSAAAEALDIQVARVSRAVSKVEKQLGVSILNRTTRRVELTDEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +++  + EL      P G+LR+        + L   ++ F  +YPDIQ++
Sbjct: 66  FVDSIRVGLLQIQQAEEELITRGELPKGRLRVDAASPFVFHQLVPLVQAFNKVYPDIQLE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ + +  S+L  R L    ++  A+P YL     P    +
Sbjct: 126 LTSNEGFVDLLEKKTDLAIRIGQ-LTDSTLHARLLGKSLLYIVASPDYLARRGIPKQTND 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I F               T+         S +  ++  ++ Q  + G+GIA L 
Sbjct: 185 LSTHETIGFSGPKILNHWPLKGFETL--------ASTVTSSNGETVRQLTLAGNGIACLS 236

Query: 246 DYIVK---DNPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++VK   +   LV ++E    + T    +   Y ++     ++ AF +FI  K 
Sbjct: 237 GFMVKKDIEEGRLVALLEPDKLINTGREQINAVYYKSSSVAKRISAFIDFIQPKL 291


>gi|316936216|ref|YP_004111198.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315603930|gb|ADU46465.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           DX-1]
          Length = 304

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 127/297 (42%), Gaps = 6/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   +++R F  +A  GS +  A  L++ QS+++RQ+  LET +G  L  R  R +TLT 
Sbjct: 5   AVTIERIRTFVRIAERGSLSAVARDLNVGQSTVTRQLQELETAIGAPLLSRTTRRVTLTA 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS+ +    ++   L+    E   +S  P+G +RI+ T   G       +  F   YP+
Sbjct: 65  EGSRYYARCVQILRLLDQAGDEALGASGAPAGTIRISCTASFGVLHASRLMFAFQDRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I   L ++ ID+  +  D A+RL  P+  SSL  R L        A+P YL     P 
Sbjct: 125 IGIDFGLTDQRIDLVREGVDLALRLA-PLTDSSLKLRPLGHSQRLLVASPDYLSVHGRPA 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  I   ++    M          +    P    L+V+  L+  +  + G GI
Sbjct: 184 VPQDLSSHQGIRMVNVAGSDM--LMLQGPDQQTHRVPFGGRLRVDHGLAAREAMIAGRGI 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A    ++V D      L  I+ +       +            +++   +F+  + R
Sbjct: 242 AAAHRWLVDDLLAAGRLEIILPEYRLSPVPLNLLIVPERAGIARVRLLIDFLAEQIR 298


>gi|295701042|ref|YP_003608935.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440255|gb|ADG19424.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 324

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 5/294 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             + VF   A  GSF  AA  L +S  + S  +  LE  +G+++F+R  R L+LT++G +
Sbjct: 5   RAISVFVRTATLGSFRRAAVDLGISPQAASHAVMQLEKSLGVQVFHRTTRKLSLTDEGQR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L +        L +   + + S  + +G L ++    LG+ +L   + EF  LYPD+QI 
Sbjct: 65  LLQSVEPALAMLSSAIDDARRSKEEVAGPLCVSAPTALGRTVLLPLILEFAALYPDVQID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D+   D+  D AD   R   P  S   I R+L+ I +   A+P YL+    P ++ +
Sbjct: 125 VRFDDHFTDLVSDRADVGFRGGSP-PSGGAIARRLLPIQLIVCASPAYLERYGAPKTVND 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           LD H    +          + ++      + +   + +  N   +  +  + G  I  L 
Sbjct: 184 LDAHRCSAYRRANTGKHAPWEFMIG-GEIVYKEMAASVCSNDVDAEAEAVLAGLVIGQLG 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +    +     LV ++   +T   ++Y  Y    +   +++ F +F   +  D
Sbjct: 243 SFSAVSHIRAGRLVPLLTQHVTQRESIYVYYRRRTEQPLRVRTFIDFSISRLAD 296


>gi|115359273|ref|YP_776411.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284561|gb|ABI90077.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 312

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 123/291 (42%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR  SFT AA +L +SQS++S  I  LET +G++L  R  R +  TE G
Sbjct: 18  NFADLLAFIAVARERSFTRAAARLGVSQSALSHTIRALETRLGVRLLTRTTRSVAPTEAG 77

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     L E   KP+G +RI  T  + + LL   L   L  Y D++
Sbjct: 78  ERLLQNLAPRFDEIEDELSALAELRDKPAGTVRINATDYVIRTLLWPRLSPILRDYRDLK 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D    DI     D  +RL   +    +  R    + M    AP Y      P + 
Sbjct: 138 VEFVTDYGLSDIVAQRFDIGVRLGDQVAKDMIAVRISPDLKMAIVGAPAYFAEREPPATP 197

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P     + W         + R+   +  N    ++   + G G+A
Sbjct: 198 QDLVAHDCINL--RLPTHGALYAWELARGDDTLQVRVDGQVTFNGTYEMLDAALAGYGLA 255

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P  +     +   LV +++D        +  Y    +++       + +
Sbjct: 256 YVPAELAAPHVEAGRLVSVLDDWCPTFPGHHLYYASRRQSSRAFALIVDAL 306


>gi|303251213|ref|ZP_07337392.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|303252291|ref|ZP_07338457.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307247772|ref|ZP_07529809.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307252363|ref|ZP_07534260.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307256838|ref|ZP_07538616.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|302648750|gb|EFL78940.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302649947|gb|EFL80124.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306855715|gb|EFM87881.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306860285|gb|EFM92301.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306864572|gb|EFM96477.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 295

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  
Sbjct: 1   MDLNNLRLFVAVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTAL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+         L     +      + SG LRI+T            + EF   YP +
Sbjct: 61  GLQLYEKVYLSLDNLTQATQDFIGEQQELSGYLRISTVSACEPIW--AAIAEFQAEYPQV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     ++ +D+  D  D A R+   + + ++I RK++ ++    A P +L     P +
Sbjct: 119 KVHCQATDRVLDLVEDGIDIAFRMGD-LHTENVIARKMMDLNAVLVAHPDFLARHGTPKT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L       +     +  +    L   ++ +    I     N   +I         I 
Sbjct: 178 PQDLTALPFACWA----RAGQKSATLQLGEQAVKIEPI--FTSNDVYAIAHQAKNAHAIC 231

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LPDY+ ++      LV +M D  T ++ ++  YP     +  +K F  F
Sbjct: 232 QLPDYMAQELTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGF 281


>gi|254469575|ref|ZP_05082980.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211961410|gb|EEA96605.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 298

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 135/297 (45%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   K+ ++  V   GSF  AA+  ++S + + R +S LE  + ++L  R  R + +TE
Sbjct: 1   MDKLRKMALYCRVVELGSFVAAAQDQNVSPAIVGRHVSDLEAMLKVRLINRTTRSMEVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIEL-QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            G + ++       +L   + ++  E     SG +R+A    LG   L   ++ F   YP
Sbjct: 61  VGHRYYQGCKISLAQLAALEQDMTNEEGEALSGIIRLAAPEGLGAPHLLSAIESFQGFYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I   L+LDN   D   +  D +IRL   +Q SSLI RKL    +  YAAP YL     P
Sbjct: 121 NILFDLVLDNGQTDFISENVDLSIRLAISMQDSSLIVRKLTDTRLCFYAAPSYLAKHGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
             +++LD+H  + FG          +W    D  + + R+   + VN      +  + G 
Sbjct: 181 KKLEDLDQHACLAFG----ASRFGDSWPIVTDMGLSKYRLPWRVVVNQTQFYRKALMKGM 236

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI LLP+ +V    ++ +L  +  DV  P   +Y  YP       ++  F   +  +
Sbjct: 237 GIGLLPEIMVAEQAEDGSLTPLSLDVTLPEVGIYTVYPNREFQPKRVSLFLKHLAER 293


>gi|167901091|ref|ZP_02488296.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 321

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G 
Sbjct: 9   LNALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGG 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L     E++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 69  RYAQQVRAALALLADATREVRASERDK--RLVVSTLPSFAARWITPRIGPFIERHPEIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 127 ELRASDSLVDFARDDVDVAIRFGHGV-YPGLHVEPLLDETFFPVCAPT-LNGGMLPETPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 185 DLVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         +VR+ +      +  +F  P +L  T +++A RN++  +   ++
Sbjct: 240 RRSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRNWLLDEIARFR 296


>gi|290509466|ref|ZP_06548837.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289778860|gb|EFD86857.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 301

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 130/294 (44%), Gaps = 10/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  ++ +++F  +  +GSF  AAE L + + ++++ +  LE E G++L  R  R L LT
Sbjct: 1   MNL-FENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G + +R +  +  + +              G+LR+   I   + L+  +L +F   +P
Sbjct: 60  PEGEEFYRRSKPLLSQADDLLESF-APGRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L   +   D+  D  DC +R+   ++    + R L  + +   A+P YL     P
Sbjct: 119 EVEIVLSSSDVRRDMLRDGLDCLLRVGD-LEDGDYVARSLGEVALTTCASPGYLARYGAP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            ++++L  H  +    +     +   W       I +  I   L +++        + G 
Sbjct: 178 ATLEDLQSH--LAVNWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDNSEVFTAAGLAGL 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+     + ++   D+  LV I+ D   P   +   YP     + K++ F +++
Sbjct: 236 GMLQGMRFFLQPYIDSGQLVEILPDFPAPRRPLSLLYPH-RHLSHKVRVFADWL 288


>gi|290511746|ref|ZP_06551114.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289775536|gb|EFD83536.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 304

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +   V   GS + AA  L++  +++SR I  LE+ +G++L  R  R LTLT+
Sbjct: 1   MDRLSAMALLVKVTELGSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  ++E  + +      +P G+L I+     G+  +   + EF+  YP 
Sbjct: 61  AGVDYVAAAQRILEEVENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L+L +++ D+  D+ D A+R+   +  SS++  +L T+ + A A P  L    EP 
Sbjct: 121 IRVRLLLSDRNADLVSDHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L    +I     +P     F      D+ I  P +  L V +  S      LG G+
Sbjct: 180 RPRDLAALPIIRIESPMPYRGWRFRAAERDDQLINLPPV--LSVTTPESAADAARLGVGV 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A L  Y   D   +  L  ++E+V      V+  Y        KL+ F +F     R 
Sbjct: 238 ARLLHYQALDGLRHGELRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDFAAPALRQ 295


>gi|167835260|ref|ZP_02462143.1| glycine cleavage system transcriptional activator [Burkholderia
           thailandensis MSMB43]
          Length = 320

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 132/297 (44%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA +L ++  ++S Q+  LE E+G++LF RH + L LTE G 
Sbjct: 9   LNALRVFEAAARHESFSRAANELSVTHGAVSHQMRALEAELGVRLFVRHGKRLALTEAGG 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L     E++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 69  RYAQQVRAALTLLADATREIRASDRDK--RLVVSTLSSFAARWITPRIGPFIERHPEIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 127 ELRASDSLVDFTRDDVDVAIRFGYGV-YPGLYVEPLLDETFFPVCAPT-LNGGVLPETPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 185 DLVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         +VR+ +      +  +F  P +L  T +++AFR ++  +   +K
Sbjct: 240 RRSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQAFRTWLLDEIARFK 296


>gi|86159639|ref|YP_466424.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776150|gb|ABC82987.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 301

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 126/286 (44%), Gaps = 6/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F V AR+ SF+ AA ++ +S +++S+ +  LE ++ + LF R  R + LT+ G +L
Sbjct: 8   QLQTFLVAARTRSFSAAAREIGVSPAAVSQSVRQLEDQLRVVLFTRTTRTVALTDAGRRL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    +   +  E+     +  G+L++         ++   L  F   +P +++++
Sbjct: 68  LEGAGPGLGQALASLQEVSAQPGEAVGRLKLTVPEVAVPYVVTPVLAAFRARHPRVEVEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +++N+ +DI  D  D  +RL + I+   +  R           AP Y++    P   ++L
Sbjct: 128 VVENRFVDIVADGYDAGVRLHEAIERDMVQVRLTDAFRFVVVGAPSYVERYGTPRRPEDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +H   TF   IP     F W L    R    P    +  N     +     G G+A   
Sbjct: 188 LRHECFTF--RIPSSGALFAWELERGRRNWRVPVRGSVVTNDRRLTLALVEQGLGLAYAF 245

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +  V++      LVR++E+        +  +P   + +G L+ F +
Sbjct: 246 EPAVREELRTGRLVRVLEEYAPTVPGFFLYFPSRAQRSGPLRLFID 291


>gi|126175905|ref|YP_001052054.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125999110|gb|ABN63185.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 344

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 137/296 (46%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT 
Sbjct: 15  KMKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTS 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  ++ +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P 
Sbjct: 75  AGSHFYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPK 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++I  ++ +D+     D A  +   + +  L+ R + T  +  YA+P YL     P 
Sbjct: 135 LTLEVISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAVHGIPK 194

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +E++ HN+  F     K    FN L          R      NS    +++ + G GI
Sbjct: 195 TPKEIEAHNVSMFRLSNGKI---FNELFIGSEQEVRVR-GNFCSNSIEVAVEFGLQGRGI 250

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              P  +V +      LV ++ ++       +  YP     +   + F ++I  + 
Sbjct: 251 VYAPAEVVDEYVQTGELVTLLPEIQPHQGECFLAYPSRRYVSLACRRFIDYIMQEL 306


>gi|293608019|ref|ZP_06690322.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828592|gb|EFF86954.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 310

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L +    YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLADLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIG-TLTDSSFHARIFGTQKYHLAASPQYVAEYGVLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL++H  + +     +    +      +  I  P    L  N+  S+M   + G GI
Sbjct: 185 QPTELNQHKCLVYKGF--EGPNRWLVRKPNEEWIHYPITPLLSSNNAESLMTAALHGMGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD+++ +     +L++++ +      +    +   YP        ++A  ++
Sbjct: 243 VLFPDWLIGEALKQGDLIKLLPEYEVAIKSQPQHIAAIYPNVRHPPLNIRAVIDY 297


>gi|283833621|ref|ZP_06353362.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291071304|gb|EFE09413.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 346

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 127/288 (44%), Gaps = 6/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +R F  +  +GS + AA+Q+  +Q+++SR++  LET +G+KL  R    + LT+ G +
Sbjct: 41  ELMRTFVRIVEAGSLSAAAKQMGTTQATVSRRLQSLETLLGVKLIMRTTHAMKLTDDGER 100

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++    +       +  L     +P G LR+      GQ  L   L +FL  YP + ++
Sbjct: 101 GYQHAKNIIDAWLALEDGLNVKEDEPVGMLRVRAPHAFGQQQLLEPLLQFLSRYPQLSVE 160

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L++K +D   D  DCAIR+   +   + +   L  +     A+P  L+   E    ++
Sbjct: 161 WMLNDKTVDFLSDNIDCAIRVGAEV-DPATVSVLLAEVPRSMVASPALLEQYGELSHPEQ 219

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L     I         +   +     ++P+       L  +S        + G G+ ++ 
Sbjct: 220 LSALPWIAVNTFFQHSVSLLH--QPRNKPVTLTIAPRLSTDSIYVARNAALAGLGVTIVS 277

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++V+++     LV ++ +    S  V+  YP A     +L+ F   +
Sbjct: 278 SWMVEEDIASGRLVLLLPEWHAASLPVHLVYPWARYYPTRLRKFLALM 325


>gi|171319096|ref|ZP_02908219.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095694|gb|EDT40651.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 324

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 128/293 (43%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F  V   GSF+  A+++H+S S+++R+I+ +E  +G+ L +R    +TLTE G 
Sbjct: 13  LGAMRAFVRVVEMGSFSAVAKEMHVSTSTVARKITAIEEALGVALLHRSTHSVTLTEAGH 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 + +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+
Sbjct: 73  IYLERAATLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +   D+     D  I   +     +L+  +L        AAP YL  C  P +  
Sbjct: 133 DVRLTDNHNDLVAGGYDLDIHEGENYLD-NLVVHRLSRNDSILCAAPGYLDRCGRPATPD 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +  + P+    +  +    R    P    L  +    +++    G GIA  
Sbjct: 192 DLPHHNCLRY--VHPEGDPRWELVRGDARHSVLP-AGNLVTDHSELLLEATCAGLGIAEF 248

Query: 245 PDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++V+D   +  L  ++             +Y  Y    +++ KL+  + F+
Sbjct: 249 EIWLVRDLLASGRLEAVLPRYRLHNKLTGEHIYIAYLANRRSSAKLRVLKEFL 301


>gi|237729772|ref|ZP_04560253.1| DNA-binding transcriptional activator GcvA [Citrobacter sp. 30_2]
 gi|226908378|gb|EEH94296.1| DNA-binding transcriptional activator GcvA [Citrobacter sp. 30_2]
          Length = 305

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 128/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTDATRKLQARSA--KGALTVSLLPSFAIQWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   +  
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDKPLKTPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G GI
Sbjct: 185 DLAKHTLLH--DASRRDWQAYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|299532743|ref|ZP_07046131.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298719378|gb|EFI60347.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 314

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 129/302 (42%), Gaps = 10/302 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +A  GSF  A   L    S +S+++  LE  +G++L  R  R L  T +G +
Sbjct: 10  DELATLVALADQGSFAAAGRLLARHPSVLSKRMQALERRLGVRLVERTTRQLHFTNEGWR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +  H +   + E  + + +  G+LR++    +G+  +   L +F L YP++ ++
Sbjct: 70  LVEKLRQAAHLIRDAEQEAAQGAQEIRGRLRLSMPATMGRRWISPMLADFSLAYPEVALE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    + +DI  +  D AIR+   +  S L+  +L   +    A+  YL+    P    +
Sbjct: 130 VEYSERIVDIVGERFDAAIRIGN-LADSRLVATRLCDQYRLLCASSSYLERHEAPDRPAD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L +HN + +  L+          A          +     +  N   +++   + G GI 
Sbjct: 189 LVRHNCLGYTGLLDFPQWRLVQSAGKKVASVAESVRVSGSILSNDNEALLHAAIKGVGII 248

Query: 243 LLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFL--KARD 296
              D+ +  +     LVRI+       +  +Y   P    NTG +KAF+ ++     A  
Sbjct: 249 AGSDWHLMPSIHAGELVRILPQWTLGEAGGIYLLRPSGQYNTGAMKAFKQWVTEAFAAAP 308

Query: 297 WK 298
           W+
Sbjct: 309 WR 310


>gi|157371399|ref|YP_001479388.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323163|gb|ABV42260.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 316

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 10/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V  SGSF+ AA +L  S S+ SR ++ LE  + ++L +R  R L L+EQG 
Sbjct: 15  LAEMAVFVQVVESGSFSAAARRLGTSPSAASRSVAKLEQALALQLLHRTTRKLRLSEQGE 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++      +     +        +V+P G + I+    +G+ +L  ++ EFL  YP + +
Sbjct: 75  EVFLRCRSMLDAANSVMAFSGRGAVEPEGLVSISVPKAVGRFVLHPHIPEFLRRYPKVDV 134

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L+++ +D+  D  D A+R+ +   S  LI R+L+TI     A P YL     P   Q
Sbjct: 135 RLRLEDRYMDLIDDRVDLALRITER-PSPGLIGRQLMTIEHLLCATPGYLAQHGTPQHPQ 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ I  G+        F       + +          N     +       GI  L
Sbjct: 194 DLAQHSCIYLGETPNDARWKFR---REGKSVTVNVHGRYAANHTGVRLDAVKQHIGIGSL 250

Query: 245 PDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           P +  +   D+  +V+++ +    S     ++  Y        KL+ F +++  
Sbjct: 251 PYFTARQALDSGEVVQVLPEWDFLSSYHGGLWLLYGPNQHLPPKLRVFIDYLVA 304


>gi|227328279|ref|ZP_03832303.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 304

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 128/294 (43%), Gaps = 15/294 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +GS   AA    +S +++S+ +S LET +G++L  R  R +TLTE G +     
Sbjct: 14  FIRVVENGSIAAAARAKGMSPAAVSQSLSRLETHLGVRLISRTTRSMTLTENGKRYFEKV 73

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             + H +E    +   S  K  G L IATT   G+ ++   +  F   +PDI I+LI  +
Sbjct: 74  RHIPHDIELA-SQAAASETKLQGPLCIATTAAFGRYVIAPLMPAFKASFPDIDIELISTD 132

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           ++++  ++  D +IR+   +    LI RK+ +I     AA  YL     P + +EL +H 
Sbjct: 133 RNVNHRLEGVDVSIRIEAQLNDQ-LIARKIASIPFIFCAAQTYLDRAGTPQTPEELSQHA 191

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV 249
            + F    P       W   V+      +++     +    I +    G G+  L  ++ 
Sbjct: 192 CLVF--RYPTDGRFLPWTFMVNGQAVNVKLNPKFISDDIDIIAKIAANGGGVTRLASFVA 249

Query: 250 K---DNPNLVRIM-------EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +   D+  L  +          V +    +Y C  E      K++AF  F+  +
Sbjct: 250 QPLIDSGQLTPLFCADRINGNHVESLPMNIYACVNERSALNSKVRAFIAFLEAE 303


>gi|213156937|ref|YP_002318982.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215483788|ref|YP_002326013.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter
           baumannii AB307-0294]
 gi|213056097|gb|ACJ40999.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986112|gb|ACJ56411.1| Putative HTH-type transcriptional regulator yafC [Acinetobacter
           baumannii AB307-0294]
          Length = 269

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/272 (24%), Positives = 132/272 (48%), Gaps = 12/272 (4%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ S++S+ IS LE  +G++L  R  R   LT +G + +    ++ + L+  +  +  + 
Sbjct: 1   MTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQFYEQGIQILNDLDELEQSVTANH 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             P G++RI T+     + L   +  F   YP+I+++  L ++ I++     D AIR   
Sbjct: 61  -IPKGRIRIHTSFSYWTHFLLPCISLFNQRYPEIELEAHLSDEVINLVEQRIDVAIRTG- 118

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P++SS+L+ R L + + H+  +P Y++    P    EL +H L+     +    ++  WL
Sbjct: 119 PLKSSNLVARSLGSTYKHSVCSPVYIEKYGCPEHPDELHEHQLL----DVSYQRQNKTWL 174

Query: 209 A-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDV-I 263
                + I       L+VN   +I+Q  + G+GIA L ++ ++       LV+I+ED  I
Sbjct: 175 FKKATQEISLTPSKVLKVNHGEAILQLALAGAGIAQLNEFQIRNALQQKQLVKILEDWNI 234

Query: 264 TPSFTVYFCYP-EALKNTGKLKAFRNFIFLKA 294
             S   +  +         +++ F +F+   A
Sbjct: 235 HASEEFHAVWIGHDKYVPNRVRTFLDFLVEHA 266


>gi|170738751|ref|YP_001767406.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168193025|gb|ACA14972.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 298

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 113/294 (38%), Gaps = 5/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VAR  SF  AA +L LS S++S  +  LE  +G +L  R  R +  TE G
Sbjct: 5   DLSDLVAFARVARHRSFRRAAAELGLSPSALSHALRDLEARLGARLLNRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L         +++    E+  S  + +G LR+       + +L      FL  +P ++
Sbjct: 65  AALLARLGPALDEIDRALGEVAASGGRLTGTLRLNAPRSACRLVLAPLAARFLSRHPGLR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  D+   DI  +  D  +R  + +    +              +P YL     P + 
Sbjct: 125 LEIACDDALADIVREGFDAGVRFGERVPRDMIAVPLGGRQRFAVVGSPAYLAARGLPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  +         M          R +       L +N    ++Q  V GSG+A 
Sbjct: 185 EDLAGHACLRQRFAGGAVMRWE--FERDGRALALDLDGPLILNEQELLLQAAVEGSGLAQ 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +           LVR++E            +P   +    L+AF +F+   A
Sbjct: 243 VFEGYAAPFLAEGRLVRLLEPWCPSFPGFLLYHPSRRQPPPPLRAFLDFVRESA 296


>gi|154245537|ref|YP_001416495.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159622|gb|ABS66838.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 313

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 8/288 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D ++L+ F  +   GS + AA +L ++ + +S++++ LE   G++L  R  R L+ T
Sbjct: 1   MLDDLNELKTFRAILAEGSLSAAARRLGITLAVVSKRLATLEDRAGVRLIQRTTRALSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G++L          +E  + +L    V+PSG LR++  I  G+  +   L +    + 
Sbjct: 61  EEGARLLIDVERALDAIEAGEEQLASGRVEPSGTLRVSAPIAFGRRCVAPVLAQLAARHA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L LD++ +D+  +  D AIR+  P  SS+++ RKL        AAP YL     P
Sbjct: 121 RLGVALELDDRVVDLVGEGFDVAIRIGAPADSSAMM-RKLADNRRILVAAPAYLDRAGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ +E   H  + +G    +  + +               + L+V+    +  + + G G
Sbjct: 180 VTPEEAAGHAFLRYG----RGSDPWRLRGPDGATASLGAAARLRVDDGDVVHDWALAGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           I L  +  V  +     L R++         +   YP A     K + 
Sbjct: 236 IMLKSEVDVAQDLATGRLTRVLPGWDGGDAPILALYPSARHVPLKTRV 283


>gi|134293322|ref|YP_001117058.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136479|gb|ABO57593.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 324

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 127/295 (43%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F  V   GSF+  A+++ +S S+++R+I+ +E  +G+ L +R    +TLTE G 
Sbjct: 13  LGAMRAFVRVVEMGSFSAVAKEMRVSTSTVARKITAIEDALGVALLHRSTHSVTLTEAGH 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+
Sbjct: 73  IYLERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +   D+     D  I   +     +L+  +L        A P YL  C  P + Q
Sbjct: 133 DVRLTDNHNDLVAGGFDLDIHEGENYLD-NLVVHRLSRNDSVLCATPGYLDRCGRPATPQ 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN + +  + P     +  +   +R    P    L  +    ++     G GIA  
Sbjct: 192 DLQQHNCLRY--VHPDGDPRWELVRGDERHSVLP-AGNLVTDHSELLLDATCAGLGIAEF 248

Query: 245 PDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             ++V+D   +  L  ++             +Y  Y    +++ KL+  ++F+  
Sbjct: 249 EIWLVRDLLASGRLEAVLPRYRLHNKLTGDYIYIAYLANRRSSAKLRVLKDFLAE 303


>gi|148549237|ref|YP_001269339.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513295|gb|ABQ80155.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 309

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 136/302 (45%), Gaps = 13/302 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R F  V  +GS    A  L LS +++S+ ++ LE+ + ++L  R  R + LT
Sbjct: 1   MDL-LNAIRCFIKVVEAGSIAAGARILGLSPAAVSQNLARLESHLQVRLLSRTTRSMALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G++ +     +   L   +  +     +P G+L IA+T   G+++L   +  F   YP
Sbjct: 60  PSGAQYYERVKHIERDLALAEQAVTTPDSEPQGRLCIASTSAFGRHVLAPLIPAFSARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++ ++ + +  D ++R+   ++   L+ R++  I     A+P YL++   P
Sbjct: 120 LLSIELVTTDRRVNHAREDVDVSLRIAPQLEDQ-LLARRIARIPFICCASPGYLQSAGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + + L  H  + F   +      + ++    R   E   + L  +   ++ Q  +   G
Sbjct: 179 ATPEALRGHRCLVFRYPVDGRFLRWGFMRDGLRFEAE-FGTVLISDDIDALTQMALHDGG 237

Query: 241 IALLPDYIVKDN---PNLVRIME-------DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L ++IV+ +     LV + E          T    +Y C  +    T K++AF +++
Sbjct: 238 ITRLAEFIVRPHLASGALVPLFEYCDSSQAYAQTEPMDIYLCLADRFAMTTKVRAFMDYL 297

Query: 291 FL 292
             
Sbjct: 298 RE 299


>gi|238787250|ref|ZP_04631049.1| Glycine cleavage system transcriptional activator [Yersinia
           frederiksenii ATCC 33641]
 gi|238724512|gb|EEQ16153.1| Glycine cleavage system transcriptional activator [Yersinia
           frederiksenii ATCC 33641]
          Length = 305

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFTSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNAAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +    + L   +L    +    AP  L          
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLLMGEHGLKVPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +WLA   R +G P+I+  Q    +    ++Q  V G GI
Sbjct: 185 DLAYHTLLH-------DTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|325529533|gb|EGD06430.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 326

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 121/291 (41%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE  +  +L +R  R L+LTE G++  
Sbjct: 7   MRVFVCVAEQQSFRRAAHHLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTEAGARYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  ++ +P G LRI  +  L    L   +  F   YP++++ L 
Sbjct: 67  DGCRALLEEFDHLEASVAHAAREPGGTLRIVASGLLSPLALTPLVSSFRQRYPELRVHLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  I     +  + +LI   L      A AAP YL+   EP S  +L
Sbjct: 127 VAEGPLDMLDSGYDVGIVTGDRLAGNPALIGHPLAPNPFVACAAPAYLERRGEPRSPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ I       +    +  +   +            VN    +    V GSGIA+LP 
Sbjct: 187 PRHDWIALAP--HQHTPAWRLVGPDEVVHAVTVRPACTVNQLALVQAAVVAGSGIAMLPS 244

Query: 247 YIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + V    DN  LVR++       P   +   YP       + ++F      
Sbjct: 245 HCVADAIDNGTLVRLLPTYRIDDPDAQLSLVYPNRQFVPARTRSFVEHALE 295


>gi|296155952|ref|ZP_06838791.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295893458|gb|EFG73237.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 311

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  +A + SF  AA  L +S +  +R +  LE  +  +L  R+ R L+LTE+G 
Sbjct: 4   LQAMRVFINIADTMSFGQAAANLGISNAMATRYLEQLEAHLNTRLVNRNTRSLSLTEEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    V  ++E  +      +++P+G LRIA       + L   L+E+L  YP++++
Sbjct: 64  IYSKGCRNVLDEIEEIETVTIRGTIEPAGTLRIAAGASFSLSSLTPLLQEYLRQYPNVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D   +  D  I L K I  ++LI+R L+++   A A+P YL     P    
Sbjct: 124 SVTLLHQHVDFVKEGFDVGIVLPKQIGGTTLIKRSLLSVRPIAVASPSYLAVKGVPSRPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +           D+ + A   R       + L VN+ L + Q  + G GIA+L
Sbjct: 184 DLTSHTFLALTAASHDG--DWIFAAPDRREKRVTLDAALMVNNALMLRQAALAGMGIAVL 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNF 289
           P+  V ++     L++++ D    +    +   Y +    + K ++F +F
Sbjct: 242 PENHVLNDLRSGTLMQVLTDFRITNADKELALVYADRRHISAKTRSFVDF 291


>gi|193077418|gb|ABO12231.2| putative transcriptional regulator LysR family [Acinetobacter
           baumannii ATCC 17978]
          Length = 310

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 128/295 (43%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIGA-LTDSSFHARIFGTQKYHLAASPQYVAKYGTLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL++H  + +     +    +      +  +  P    L  N+  S+M   +   GI
Sbjct: 185 HPTELNQHKCLVYKGF--EGPNRWLVRKPNEEWVHYPITPLLSSNNAESLMTAALHSMGI 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD+++ +     +L++++ +      +P   +   YP        ++A  ++
Sbjct: 243 VLFPDWLIGEALKKGDLIKLLPEYEVAIKSPPQHIAAIYPNVRHPPLNIRAVIDY 297


>gi|217971857|ref|YP_002356608.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217496992|gb|ACK45185.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 329

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 138/295 (46%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  
Sbjct: 1   MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  ++ +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P +
Sbjct: 61  GSHFYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I  ++ +D+     D A  +   + +  L+ R + T  +  YA+P YL     P +
Sbjct: 121 TLEVISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAVHGIPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +E++ HN+  F     K    FN L          R      NS    +++ + G GI 
Sbjct: 181 PKEIEAHNVSMFRLSNGKI---FNELFIGSEQEVRVR-GNFCSNSIEVAVEFGLQGRGIV 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P  +V +   +  LV ++ ++       +  YP     +   + F ++I  + 
Sbjct: 237 YAPAEVVDEYVQSGELVTLLPEIQPHQGECFLAYPSRRYVSLACRRFIDYIMQEL 291


>gi|238792768|ref|ZP_04636399.1| Glycine cleavage system transcriptional activator [Yersinia
           intermedia ATCC 29909]
 gi|238727876|gb|EEQ19399.1| Glycine cleavage system transcriptional activator [Yersinia
           intermedia ATCC 29909]
          Length = 305

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFTSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNAAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +    + L   +L    +    AP  L          
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPTILTGEHGLKVPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +W+A   R +G P+I+  Q    +    ++Q  V G GI
Sbjct: 185 DLANHTLLH-------DTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|307129050|ref|YP_003881066.1| putative transcriptional regulator LYSR-type [Dickeya dadantii
           3937]
 gi|306526579|gb|ADM96509.1| Putative transcriptional regulator LYSR-type [Dickeya dadantii
           3937]
          Length = 314

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 122/291 (41%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   GSFT AA QL +S S++S+ ++ LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKSMSVFARVVEFGSFTAAARQLQMSVSAVSQTVTRLEDELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     + H+ +    +L   +  P G LRI ++  + QN+L     + L  YP + +
Sbjct: 64  IYYHGCRRMLHEAQEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLANMTTDMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL   +L ++ M   AA  YL     P    
Sbjct: 124 NLVCGIPAPDLIADGLDIVIRVGA-LQDSSLYSTRLGSMPMVVCAARSYLTQHGSPEKPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N  ++++++   G+GIA +
Sbjct: 183 DVSNISWLEYSVRPDS---EFELIAPEGITTRLTPQGRFVTNDPVTLIRWLKNGAGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P   V +      +  +     +    VY  Y        K++   N++  
Sbjct: 240 PLMWVFEEIKRGEIEILFPRYHSDPRPVYALYTRRDNLPLKVQVCINYLTE 290


>gi|91790089|ref|YP_551041.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699314|gb|ABE46143.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 312

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 128/293 (43%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V   G F+ AA+ L ++ S++S+ I+ LE  +G +L  R  R L +T +G+  
Sbjct: 11  DMEAFVQVVERGGFSAAAQTLCMTPSAVSKLITRLEARLGTRLLNRSTRKLQITPEGTTF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  ++ V   ++        +S  P G++ +  ++  G +LL   +  F   +PDI + +
Sbjct: 71  YEHSTRVLADMDE-AERSAAASAAPRGRVSVNASMPTGHHLLLPLVPAFHARFPDILLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+  + AD AIR    + SS L+ R+L         AP YL     P ++QEL
Sbjct: 130 SLTDRVVDLLDERADVAIRWGA-LASSQLVARRLGDTAQVIVGAPAYLARHGTPQTMQEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +               L    +    P     +V+   ++    + G+G+A +  
Sbjct: 189 AAHQRLGHNYKRNAPYWP---LRVNGQLQQLPIAGYARVSDGEALRHLALAGAGLARMSV 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKA 294
           + ++ +     LV + E +       ++  +  +  +   +++ F +F+    
Sbjct: 246 FHIQADIKAGRLVPVAEHLNPGEREPIHAVFLGKGGRLPARVRVFLDFLVAAV 298


>gi|13476483|ref|NP_108053.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14027244|dbj|BAB54198.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 310

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 127/295 (43%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              ++++R F  VA  GS +  A +  + QS+I+R +  LE  VG+ L  R  R +T+T 
Sbjct: 5   DITFERMRSFVRVAERGSLSAVAREFGVGQSTITRHVRELEEAVGVPLLSRTTRRVTMTA 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS+ +  + ++   +E    E + +   P+G +RI+ T   G   +   +  F   +PD
Sbjct: 65  EGSRYYANSVQILRLVEQASDEARGTRGAPAGTIRISCTAAFGVLHVSRLIFAFQDRHPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D+  +  D A+RL  P+  SSL  R L        A+P YL     P 
Sbjct: 125 IGVDLSLTDERVDLVREGVDIALRLG-PLTDSSLKLRALGQSRRLLVASPDYLAARGRPA 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I   ++     E         +    P    L+++  L+  Q  +   GI
Sbjct: 184 DPSDLSRHEGIRMSNVAGS--ETLALQGADGQRHTVPFAGRLRIDHGLAARQAMIAARGI 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A    ++V D      L  I+ D   PS  +            +++    F+  +
Sbjct: 242 APAHRWLVDDLLAAGLLETILADYSLPSVPLNMLIVPERAGVARVRLLVEFLAEQ 296


>gi|187921376|ref|YP_001890408.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719814|gb|ACD21037.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 308

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 121/297 (40%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++VF      GS   A+ +L  S +++SR I+ LE  VG  L +R  R + L+E
Sbjct: 1   MDRIDAMKVFVATLDEGSLAGASRRLGRSPAAVSRAIAFLEEHVGTALLHRTTRTIKLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   LE   + +      P G L I   +  GQ++LQ  + EF+  YP 
Sbjct: 61  AGERYAAACRRILTDLEEADLLIAGERSAPRGLLTITAPVAAGQDMLQPIIDEFVDRYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L + ++ + +  +  D A+R+   +  S+L+   +  +     A+P YL       
Sbjct: 121 VSVRLNMLDRPVSLIDEGMDLALRIAH-LPDSTLVAIPVGEVRRVVAASPRYLAKHPPIT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H +I+           F        P          VNS  + +   V G G+
Sbjct: 180 DPADLAQHQIISMTHFGLDSWS-FPPPNGSTIPRVVQFTPRFIVNSIQAAVASAVAGHGV 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y V +      L  ++ D       V+   P       K++AF +F   + R
Sbjct: 239 TRMFSYHVAEQVKEGTLKIVLSDNEPAPLPVHLLTPHGRLAVPKVRAFVDFATPRLR 295


>gi|170692713|ref|ZP_02883875.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142369|gb|EDT10535.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 302

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 123/275 (44%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E+  G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMESRAGVALVNRTTRRMMLTPEGELYLEHARRILDEIDELAELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +   P G LR+  T+  G++ +   +  F+  YP + +QL L      ++ D  D  I
Sbjct: 87  GSAKKSPKGLLRVNATLGFGRSHVAPAISHFVAKYPQVSVQLQLSVTPPPLTDDTFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + +I R+L        AAP Y+ +   P++  +L +HN I    GD      
Sbjct: 147 RFGEP-PDTRVIARRLAANRRLLCAAPSYIASHGMPMTPHDLTRHNCIGIRQGDEAYGVW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
              +      +         L  N     +++ + G GI +  ++ +K    + +LV ++
Sbjct: 206 RLSSGKGASLKTEAVRIKGTLTTNDGEIAVKWALEGHGILMRAEWDIKQYLADGSLVVVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               TP+  ++  Y +  + + +++AF +FI  + 
Sbjct: 266 PGYDTPNADIFAVYSQRHQMSNRIRAFVDFIAREL 300


>gi|146310252|ref|YP_001175326.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145317128|gb|ABP59275.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 301

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 122/293 (41%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  +   GSF+ AA  +  + S++SR +S LE E+G KL +R  R L LTE G  +
Sbjct: 8   DLATFVAIVEHGSFSAAARIVGATPSALSRCVSRLEHEMGGKLLHRTTRKLALTETGKSV 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++    +              G+L ++    +G+ ++   + EFL  +P I + L
Sbjct: 68  YEHALDMLEAAKQALDSGSSLQTVAQGRLTLSVPKAVGRFVIHPLIPEFLNRHPQIDVCL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ +D+  D  D A+R+     S  L  + L+ +     A P YL+    P   Q+L
Sbjct: 128 RLEDRYMDLIDDGVDLALRITN-TPSPGLYGKALMPVTHIIGATPEYLRRAGIPQHPQDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ I+ G+        F   A   +            N     +       GI  LP 
Sbjct: 187 RAHSCISLGETPADSRWKF---ALHGKTETVQTRGRYAANHTGVRLDAVKRHLGIGSLPL 243

Query: 247 YIVKDN---PNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  ++      +V+++ +     + S  ++  +        +++A  N++  K
Sbjct: 244 FTAREALACGEIVQVLPEWEFISSYSGDLWLLWTRNKHMPARMRAMINYLNEK 296


>gi|307943048|ref|ZP_07658393.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307773844|gb|EFO33060.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 302

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 133/296 (44%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + +R+F + A   + + A ++L ++ +  S +++ LE ++G++L +R  R ++L+ +
Sbjct: 1   MQTEAIRLFVLAAEKLNISAAGKKLDMAPAVASSKLAKLEKQLGVELLHRSTRKVSLSLE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++      E+  +       L +   + SG LR        Q  +   L +FL   P+I
Sbjct: 61  GAEFLFYAKEMLAQEAEALAALGKGKSEVSGTLRFTAPSTFAQLYIAPILPDFLDQNPNI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +   D+     D A+R  + ++ +SL  RKL        A+P+YL+    P +
Sbjct: 121 DLDLRLSDARFDLIEGSFDLALRNAR-LEDTSLKGRKLADDVRLLCASPNYLETHGVPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H L+ F       +           PI       + V+  LS     + G+GI+
Sbjct: 180 PDDLSEHQLMLFQGQPSLKLITKEGEGCDVAPILSK--YRVSVDDGLSQKLLTMSGAGIS 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRNFIFLKA 294
           +   + V        LVR++ D +    +V +  YP++   T K++ F +FI  + 
Sbjct: 238 INSLWSVHKELKEGTLVRVLPDYVANHNSVLWLVYPKSNVLTPKVRVFMDFILERL 293


>gi|193077085|gb|ABO11848.2| regulatory protein LysR:LysR, substrate-binding [Acinetobacter
           baumannii ATCC 17978]
          Length = 304

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 15/299 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F   AR  SF+ AA++L+++ +++ + +  LE  +G  LF+R   G   L  TE
Sbjct: 7   LNALRAFEASARHKSFSAAAKELNVTPAAVGQLVRTLEDWLGFPLFHRQTNGKNRLVATE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               +       + KL     +L++     SG L IA +    +  L   +  F   YPD
Sbjct: 67  LAESVLPDIRAGFDKLTLALEKLKQ--DSLSGVLNIAVSPAFAEKWLLPRIDHFQKQYPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L ++ K +D      D  +R  +  Q   L   KL+   ++   +P +L      L
Sbjct: 125 IDIRLDINLKTVDFLEQKVDVGVRYGQG-QWQGLEAVKLMDEEVYPVCSPAFLNEHSFLL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLG 238
           +  +L    LI   DL  +  + F    +  + +G   I     +Q+NS  +++Q  + G
Sbjct: 184 TPNDLKNITLIH--DLSMEKHQQFPGWQSWLKSVGLNDINISRGMQINSSSAVLQAAMEG 241

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+AL    +V+ +     L+R+   +  +  F+ Y  Y     N  K+K   ++ F +
Sbjct: 242 HGVALARSVMVQKDIQTGRLIRLFPQINFSSPFSYYLVYRPQYANLPKVKICLDWFFEE 300


>gi|325122344|gb|ADY81867.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 310

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 127/295 (43%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D   LR F  V  + +F++ A +  +S S ISR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   SIDIRTLRFFISVYNAQNFSNVARKEDVSASMISRTIQQLEDALGQQLFYRNTRAITPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  + +  Q  LQ+ +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGKLFFEYAKRITEQFDEAQKALQDKTIEPSGLVRINAPVFFGQRHIAPWLAGLSERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LI  ++ ID   +  D   R+   +  SS   R   T   H  A+P Y+       
Sbjct: 126 LLIELIQTDEFIDPLRESTDLIFRIG-TLTDSSFHARIFGTQKYHLAASPQYIAKYGTLD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL++H  + +     +    +      +  I  P    L  N+  S+M   + G GI
Sbjct: 185 HPTELNQHKCLVYKGF--EGPNRWLVRKPAEEWIHYPLTPLLSSNNAESLMTAALHGMGI 242

Query: 242 ALLPDYIVKDNPN---LVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD+++ +      L++++ +      +    +   YP        ++A  ++
Sbjct: 243 ILFPDWLIGEALKQSHLIKLLPEYEVAIKSQPQHIAAIYPNVRHQPLNIRAVIDY 297


>gi|187921818|ref|YP_001890850.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187720256|gb|ACD21479.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 312

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 115/293 (39%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L     VAR  SF  AA  L +S S++S  ++ LE  +G++LF R  R + L+E G+
Sbjct: 6   LGELEAILAVARHRSFRAAATDLGVSTSALSHAVAALEARIGVRLFNRTTRSVALSEAGA 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     +     +     +        SG LRI  ++   +         FL  YPD+++
Sbjct: 66  QFVDSVAPALSTIRVAIEQAGSFRDTLSGTLRINASVGAAKQA-MPLFIAFLQRYPDMKL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+ + + IDI +D  D  IRL + +    +              +P Y    + P +  
Sbjct: 125 DLVTEGRLIDIVVDGFDAGIRLAETVPQDMIAVPFGDKQRFAVVGSPAYFAQHKAPRTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I     +P               +       L ++    +++    G G+  L
Sbjct: 185 DLHAHRCI--RTRMPSGAIYQWEFERRGETVRIDGKGALTLDEPGLMLEAARAGLGVTYL 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++ V  +     LVR++ED   P   +   YP        L+A  + I  +A
Sbjct: 243 TEWNVAADLQAGTLVRVLEDWTPPLDGLCLYYPGRRHAPAGLRALIDMIREQA 295


>gi|294340728|emb|CAZ89120.1| putative Bacterial regulatory protein, LysR [Thiomonas sp. 3As]
          Length = 302

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA SGSF+ AA QL  + S++SRQ+S LE  +G++L  R  R L LT  G   
Sbjct: 12  EMVTFLRVAESGSFSAAARQLGTTPSAVSRQVSRLEKHLGVQLILRTTRQLRLTAAGDAA 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E+           Q+ +  P G + I+      +++L   L +FL  +P +Q+QL
Sbjct: 72  RVRCGELVAAAHAVMQVPQQIAGTPKGSICISAPKAFARHVLHPLLLQFLAQWPQVQLQL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I  + ++D   +  D  IR+ +         R+L+ +     AAP YL          +L
Sbjct: 132 IATDHEVDPFREGVDLMIRVTRH-PPEGFAARELMQVEQVLCAAPAYLAAHPAITHPSDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +  G+        F      D            VN     ++  ++G G+  LPD
Sbjct: 191 AVHSCLPLGEDAHDRCWRFR---QGDTETKVVVQGRYAVNHSALRLEAMLVGLGLCTLPD 247

Query: 247 YIVK---DNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           Y+ +   +N + V+++ D     +     Y  YP +   +  L+A  + +    
Sbjct: 248 YVARHALENRSAVQVLPDWNFLGSYGGRAYALYPPSRFVSPTLRALIDHLAAAL 301


>gi|21232109|ref|NP_638026.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21113856|gb|AAM41950.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 304

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 134/291 (46%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+VF  VAR GSFT AA QL +SQS++S  +  LET +GI+L  R  R +++TE G
Sbjct: 10  NLNDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    +++     L     KP+G +RI T        L   L + L  YPD++
Sbjct: 70  MRLFDTVAPRLEEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSKVLPDYPDLK 129

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    DI  +  D  +RL   +    +         M   AAP Y  +   P   
Sbjct: 130 VEITVDYGLADIVAERYDIGVRLGDQVAKDMIAVPISPRQRMAVVAAPSYFVHHTIPAVP 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL +HN I     +P       W    D    + R+      N   ++++  + G+G+A
Sbjct: 190 AELAQHNCIGL--RLPTHGGLLPWDFEKDGREQKVRVDGQWTFNGSSAMLRAALAGAGLA 247

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+ +V D+     L R+++D   P    Y  YP   +++  LK   + +
Sbjct: 248 FLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALKVVIDAL 298


>gi|299531945|ref|ZP_07045345.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298720120|gb|EFI61077.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 303

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 128/295 (43%), Gaps = 7/295 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D ++L  F  V   G F  A   L L +S +SR+++ LE  +G +L  R  R   +
Sbjct: 1   MKLPDLNELYYFAQVVEHGGFAPAGRALGLPKSKLSRRVALLEERLGAQLLLRSTRSFAV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G + ++    +  + E  +  +     +P GK+R++  + L  + +   L EF+  Y
Sbjct: 61  TEVGKRYYQHCRAMLTEAEAAEESVALVHSEPCGKVRMSCPVALLASRVGRMLGEFMRQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P +++Q+   N+ +D+  +  D A+R+R  P+Q S L+ R L        AAP  L+   
Sbjct: 121 PRVELQVDETNRRVDVIGEGLDLALRVRPPPLQDSDLVLRTLAERRQCLVAAPELLQRLG 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +P    +L     +  G L        +    V   +       L   S L++    +LG
Sbjct: 181 QPGGPMDLSAWPSLDMGGLQETHRWVLHGPEAVRAEVRHQ--PRLVTQSMLALRDAALLG 238

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +G+  LP   V+++     LV+++         ++  Y         ++A  + +
Sbjct: 239 AGVVQLPSMFVREDLRSGTLVQVLPGWEPRPEIIHAVYASRRGQLPAVRALLDHL 293


>gi|170693311|ref|ZP_02884471.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141841|gb|EDT10009.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 321

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 132/297 (44%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +    A SGSF+ A+ +L +   ++SR+++ LE  +  +L  R  R LTLT+
Sbjct: 1   MDRLEAMSILVAAAESGSFSAASRKLRMPLPTVSRKVAELEAHLNARLLVRSTRKLTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++  ++   +         P G+L +   +  G+  +   + +FL  + +
Sbjct: 61  AGVAYLAACKQILEQVSEAESAAAGEYSAPRGELVVTAPVVFGRLHMLPVVSDFLAAFAE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L ++++ +  ++ D A+R+ K +  SS++  ++ T+     A+P YL    EP 
Sbjct: 121 ITVRLVLADRNLHLLDEHIDVALRIGK-LPDSSMVATQVGTVGRVVCASPQYLAQAGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L + + I    L    + +F       + +  P  + L VN+  + +   + G G+
Sbjct: 180 TPADLARFSCIVSDALPSSYVWEFGGHQAPQQTV--PIRARLSVNTVEAAIDAAIAGVGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y          L  ++ +       V   +    K   K ++F +FI  + R
Sbjct: 238 TNVLSYQAASAVSEGKLKLVLREFEPEPIPVSVMHAGQGKLPLKTRSFIDFIVPRLR 294


>gi|323492186|ref|ZP_08097344.1| LyrR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323313499|gb|EGA66605.1| LyrR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 296

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 139/295 (47%), Gaps = 9/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D + VF  V  + SFT AAEQL + ++ +S+ ++ LE E+  +L +R  R L+LTE 
Sbjct: 2   ISIDDMMVFTRVVETQSFTKAAEQLGIGKARVSQIVTKLEQELNTRLIHRTTRSLSLTET 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  +     +         + Q+ S +P+G +R++T + +   +      +FL  YP I
Sbjct: 62  GAHYYEKCQMIQELATEANNQAQKFSSEPNGMIRVSTPVGIAAYV--DLFSQFLAKYPQI 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++++  +   ++     D AIR    ++ SSL   ++        A+P YL+   E  S
Sbjct: 120 QLEIVESDSYSNLIESRCDIAIRASSDLEDSSLYATRIGQFEDILCASPQYLQRFEELQS 179

Query: 183 IQELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            Q+L   + I+   +   K +E  +    V R   + R+     NS   +  + +   G 
Sbjct: 180 AQDLLTLDWISHDIVHGDKVLELTSSQGEVVRLKKKARVRVRTTNS---LRGFLLNHIGF 236

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +++P++ VKD      LVRI+ DV + +  +Y  Y        + +A  +F+  +
Sbjct: 237 SVVPEFAVKDELASRELVRILPDVHSVTIPLYAVYQNKALMPLRNRALIDFLKQE 291


>gi|206579434|ref|YP_002238442.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206568492|gb|ACI10268.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 301

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 130/294 (44%), Gaps = 10/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  ++ +++F  +  +GSF  AAE L + + ++++ +  LE E G++L  R  R L LT
Sbjct: 1   MNL-FENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G + +R +  +  + +              G+LR+   I   + L+  +L +F   +P
Sbjct: 60  PEGEEFYRRSKPLLSQADDLLESF-APDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L   +   D+  D  DC +R+   ++    + R L  + +   A+P YL     P
Sbjct: 119 EVEIVLSSSDVRRDMLRDGLDCLLRVGD-LEDGDYVARSLGEVALTTCASPGYLARYGAP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            ++++L  H  +    +     +   W       I +  I   L +++        + G 
Sbjct: 178 ATLEDLQSH--LAVNWVNSSSRQIMPWRFQTAEGIRQIAIPGKLVLDNSEVFTAAGLAGL 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+     + ++   D+  LV I+ D   P   +   YP     + K++ F +++
Sbjct: 236 GMLQGMRFFLQPYIDSGQLVEILPDFPAPRRPLSLLYPH-RHLSHKVRVFADWL 288


>gi|170697774|ref|ZP_02888860.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137276|gb|EDT05518.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 324

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F  V   GSF+  A+++H+S S+++R+I+ +E  +G+ L +R    +TLTE G 
Sbjct: 13  LGAMRAFVRVVEMGSFSAVAKEMHVSTSTVARKITAIEEALGVALLHRSTHSVTLTEAGH 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+
Sbjct: 73  IYLERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +   D+     D  I   +     +L+  +L        A P YL  C  P +  
Sbjct: 133 DVRLTDNHNDLVAGGYDLDIHEGENYLD-NLVVHRLSRNDSILCATPGYLDRCGRPATPD 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +  + P+    +  +    R    P    L  +    +++    G GIA  
Sbjct: 192 DLLHHNCLRY--VHPEGDPRWELVRGDARHSVLP-AGNLVTDHSELLLEATCAGLGIAEF 248

Query: 245 PDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++V+D   +  L  ++             +Y  Y    +++ KL+  ++F+
Sbjct: 249 EIWLVRDLLASGRLEAVLPRYRLHNKLTGEHIYIAYLANRRSSAKLRVLKDFL 301


>gi|152972539|ref|YP_001337685.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150957388|gb|ABR79418.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 304

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +   V   GS + AA  L++  +++SR I  LE+ +G++L  R  R LTLT+
Sbjct: 1   MDRLNAMALLVKVTELGSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  ++E  + +      +P G+L I+     G+  +   + EF+  YP 
Sbjct: 61  AGVDYVAAARRILEEVENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L+L +++ D+  D+ D A+R+   +  SS++  +L T+ + A A P  L    EP 
Sbjct: 121 IRVRLLLSDRNADLVSDHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L    +I     +P     F      D+ I  P +  L V +  S      LG G+
Sbjct: 180 RPRDLAALPIIRIESPMPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGV 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A L  Y   D   +  L  ++E+V      V+  Y        KL+ F +F     R 
Sbjct: 238 ARLLHYQALDGLRHGELRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDFAAPALRQ 295


>gi|152971681|ref|YP_001336790.1| DNA-binding transcriptional activator GcvA [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206577305|ref|YP_002236827.1| glycine cleavage system transcriptional activator [Klebsiella
           pneumoniae 342]
 gi|238896280|ref|YP_002921016.1| DNA-binding transcriptional activator GcvA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|288933777|ref|YP_003437836.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290511143|ref|ZP_06550512.1| LysR family transcriptional regulator, glycine cleavage system
           transcriptional activator [Klebsiella sp. 1_1_55]
 gi|330003171|ref|ZP_08304550.1| glycine cleavage system transcriptional activator [Klebsiella sp.
           MS 92-3]
 gi|150956530|gb|ABR78560.1| positive regulator of gcv operon [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206566363|gb|ACI08139.1| glycine cleavage system transcriptional activator [Klebsiella
           pneumoniae 342]
 gi|238548598|dbj|BAH64949.1| positive regulator of gcv operon [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|288888506|gb|ADC56824.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289776136|gb|EFD84135.1| LysR family transcriptional regulator, glycine cleavage system
           transcriptional activator [Klebsiella sp. 1_1_55]
 gi|328537054|gb|EGF63338.1| glycine cleavage system transcriptional activator [Klebsiella sp.
           MS 92-3]
          Length = 305

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   E++ +L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYFQDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIQWLVPRLTSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   +  
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDKALKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L +H L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAQHTLLH--DASRRDWQTYT------RQLGLSHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|241205029|ref|YP_002976125.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858919|gb|ACS56586.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 298

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 121/297 (40%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V  SG F  A+  L + +S +SR++S LE  +G +L  R  R   +TE G
Sbjct: 3   DLNDYYYFAAVVSSGGFASASRDLKIPRSKLSRRVSRLEEGLGARLIERSTRHFRVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  +  + E+   P G +R+   + L    + G L EFL  YP I+
Sbjct: 63  QAFYERCQTILQEADRAKSIVSEAQSDPQGVVRMGCPLGLVDISVGGILPEFLERYPKIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+I  ++  D+  +  D  +R   +P   +SL  RKL  I     A+P  ++       
Sbjct: 123 LQIIGSDRRADLINERIDLEVRATNEPETQTSLTMRKLDRIRRILVASPSLVERTGNLHC 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL     +     +      +  +   D  +       L   S  +I+     G G  
Sbjct: 183 VDELADLPTLAMTSWV--SFHTWELVGPNDAKLVIRHQPRLTCRSMTAILDAARAGLGFG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LL +   + +     LVR++ +  +     Y  +  A      ++   +F+  K+R 
Sbjct: 241 LLLESACEADLQAGKLVRVLPEWQSEESQFYIVFTTAKGMPPAVRVLIDFLVEKSRQ 297


>gi|53716728|ref|YP_105766.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|121597226|ref|YP_989718.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124383076|ref|YP_001024147.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126445711|ref|YP_001078456.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|167003719|ref|ZP_02269503.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|238563675|ref|ZP_04610675.1| putative HTH-type transcriptional regulator YhjC [Burkholderia
           mallei GB8 horse 4]
 gi|254174364|ref|ZP_04881026.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254200573|ref|ZP_04906938.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254204597|ref|ZP_04910950.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254356776|ref|ZP_04973051.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52422698|gb|AAU46268.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|121225024|gb|ABM48555.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124291096|gb|ABN00366.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126238565|gb|ABO01677.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|147748185|gb|EDK55260.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754183|gb|EDK61247.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148025803|gb|EDK83926.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160695410|gb|EDP85380.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|238520227|gb|EEP83689.1| putative HTH-type transcriptional regulator YhjC [Burkholderia
           mallei GB8 horse 4]
 gi|243060779|gb|EES42965.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 351

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+
Sbjct: 1   MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVCLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   LE  +   + +   P G LR+     L +  +   L +FL  YP 
Sbjct: 61  DGEAYYRRCVRLIADLEEAEGAFRAA--APRGLLRVNLQGTLARYFVVPALPDFLARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IRLHIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            +  L  H  + +  +     +      TVD  + E R+ + + V          V G G
Sbjct: 178 ELAALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++  +
Sbjct: 236 IVQVPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRER 291


>gi|54310106|ref|YP_131126.1| DNA-binding transcriptional activator GcvA [Photobacterium
           profundum SS9]
 gi|46914545|emb|CAG21324.1| putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 302

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 127/293 (43%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V+  +     ++ E      G L I+         L   L +F   +P+I +
Sbjct: 68  SYFLDIKDVFSAISEATDKVLERGA--KGALTISLPPSFAIQWLVPRLADFNEQHPEIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +    + L   KL   ++    +P  L   +   ++ 
Sbjct: 126 RIKAVDLDEGSLTDDVDVAIYYGRG-NWTGLRADKLYQEYLLPVCSPMLLAGIKPLRTLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          E  N++   +          +  +    ++Q  V G GIAL 
Sbjct: 185 DLKLHTLLH----DTSRKEWKNYVRHYELTDINVNQGPI-FSHSTMVLQAAVHGQGIALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   D   LV   ++++      Y    E    TG+++AFR+++  KA
Sbjct: 240 NNVLAQPELDAGRLVCPFDEILMSKNAFYLVCQERQAETGRIQAFRDWVLAKA 292


>gi|319792802|ref|YP_004154442.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595265|gb|ADU36331.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 294

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 136/297 (45%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  +GS T AAEQL  + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKTTIEELVAFRTVVDTGSITAAAEQLGHTVSGISRALSRLEQKLDTTLMRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+   + T  +   ++  + ++     +P+G+LR+        + +   + EF  LYP
Sbjct: 61  EEGAAFLQRTRAILDAIDDAEEQMAARREQPAGRLRVNAASPFMLHAIVPLVPEFRKLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+  ID+     D AIR+  P++ S+L  R L T  +   A+P Y++   +P
Sbjct: 121 QISLELDTDDLPIDLLERRTDIAIRIG-PLRDSTLHARPLGTHRLRVLASPAYIEAHGKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H L+ F                 +  I       L  +S  ++ Q  + G+G
Sbjct: 180 RTAAELADHALLGFTQPESLNRWPLRGAHGDEWAIA----PTLAASSGETLRQLALAGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  L D++   +     LV+++  + +     V   Y    + + ++ +F +F+  +
Sbjct: 236 IVCLADFMTAADRASGALVQVLAKETVDVRQPVNAVYYRNTQLSARITSFLDFLSQR 292


>gi|251788358|ref|YP_003003079.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247536979|gb|ACT05600.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 319

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 129/295 (43%), Gaps = 5/295 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             +  F     +GSF  A   L +S +++S+ ++GLE  +G++L  R  R L LT++G+ 
Sbjct: 8   RAIVSFVQAVDTGSFAAAGRTLGISSAAVSKNVAGLEQTLGVRLMNRTTRTLNLTDEGAA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R        L+     L E   +  G +R++ ++  G + L   L    + YP + I+
Sbjct: 68  FLRQARIALEALDAAVDVLAEQRAEIGGHVRLSCSVGFGHDHLMPVLPGLQVRYPSLTIE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              D++ +D+  D  D AIR    I  S+L+ R +  ++M   A+P YL     P + Q+
Sbjct: 128 ADFDDRVVDLVRDGYDLAIR-GGQIVDSALVSRPICRLNMALVASPDYLARAGVPATPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL- 244
           L  H LI    L  K           ++       + + +++  +++Q   LG GIA + 
Sbjct: 187 LPSHRLIVRRFLGGKVSPWIFRDREGNQTSLNLDSAAMTLSAPEALVQAASLGLGIAQVG 246

Query: 245 --PDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               +       L  ++ D+  P  + +   YP       +++A  +++     D
Sbjct: 247 VHTAWPALREGRLKVVLPDLHDPGNYEMVLQYPHRALMAPRVRATLDYLLAAFAD 301


>gi|126208266|ref|YP_001053491.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           L20]
 gi|126097058|gb|ABN73886.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 295

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 127/290 (43%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  
Sbjct: 1   MDLNNLRLFVTVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTAL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     ++H L     +      + SG LRI+T            + EF   YP +
Sbjct: 61  GLQLYEKVYLIFHNLTQATQDFIGEQQELSGYLRISTVSACEPIW--AAIAEFQAEYPQV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     ++ +D+  D  D A R+   + + ++I RK++ ++    A P +L     P +
Sbjct: 119 KVHCQATDRVLDLVEDGIDIAFRMGD-LHTENVIARKMMDLNAVLVAHPDFLARHGTPKT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L       +     +  +    L   ++ +    I     N   +I         I 
Sbjct: 178 PQDLTALPFACWA----RAGQKSATLQLGEQAVKIEPI--FTSNDVYAIAHQAKNAHAIC 231

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LPDY+ ++      LV +M D  T ++ ++  YP     +  +K F  F
Sbjct: 232 QLPDYMAQELTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGF 281


>gi|260555352|ref|ZP_05827573.1| D-serine deaminase transcriptional activator [Acinetobacter
           baumannii ATCC 19606]
 gi|260411894|gb|EEX05191.1| D-serine deaminase transcriptional activator [Acinetobacter
           baumannii ATCC 19606]
          Length = 304

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 131/299 (43%), Gaps = 15/299 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F   AR  SF+ AA++L+++ +++ + +  LE  +G  LF+R   G   L  TE
Sbjct: 7   LNALRAFEASARHKSFSAAAKELNVTPAAVGQLVRTLEDWLGFPLFHRQTNGKNRLVATE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               +       + KL     +L++     SG L IA +    +  L   +  F   YPD
Sbjct: 67  LAESVLPDIRAGFDKLTLALEKLKQ--DSLSGMLNIAVSPAFAEKWLLPRIDHFQKQYPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L ++ K +D      D  +R  +  Q   L   KL+   ++   +P +L      L
Sbjct: 125 IDIRLDINLKTVDFLEQKVDVGVRYGQG-QWQGLEAVKLMDEEVYPVCSPAFLNEHSFLL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLG 238
           +  +L    LI   DL  +  + F    +  + +G   I     +Q+NS  +++Q  + G
Sbjct: 184 TPNDLKNITLIH--DLSMEKHQQFPGWQSWLKSVGLNDINISRGMQINSSSAVLQAAMEG 241

Query: 239 SGIALLPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+AL    +V+ +     L+R+      +  F+ Y  Y     N  K+K   ++ F +
Sbjct: 242 HGVALARSVMVQKDIQTGRLIRLFPQIHFSSPFSYYLVYRPQYANLPKVKICLDWFFEE 300


>gi|15597613|ref|NP_251107.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|254240846|ref|ZP_04934168.1| hypothetical protein PA2G_01520 [Pseudomonas aeruginosa 2192]
 gi|9948462|gb|AAG05805.1|AE004669_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126194224|gb|EAZ58287.1| hypothetical protein PA2G_01520 [Pseudomonas aeruginosa 2192]
          Length = 312

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 124/298 (41%), Gaps = 6/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L ++  V   G F  A   L + +S+ISR+++ LE  +G++L  R  R   +TE 
Sbjct: 7   FDLNALFIYAKVVEHGGFAPAGRVLGIPKSTISRKVAQLEARLGVRLVQRSTRQFQVTEI 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R    +  + E  +  ++++  +P G +R+  +  L    L   L  F+  YP++
Sbjct: 67  GQAYYRHCVAMTVEAEAAEDVIEQNRSEPCGMVRLTCSTPLLHFELAPMLARFMAQYPNV 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +   N+ +D+  +  D ++ LR  P++ S L+ + L        A+P  L   R P 
Sbjct: 127 ELYVKTFNRRVDVIAEGYDISLSLRFPPLEDSDLVMKVLARSPQVLVASPELLARYRPPE 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     + +     +       +              L  +   ++ Q  + G GI
Sbjct: 187 LPADLSAMPYVGWER--SRLDGSLRLVGADGSSAALNLRPQLLSDDLGTLRQAVLEGVGI 244

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +V  +     LVR++ +       V   +P        ++A  +F+     D
Sbjct: 245 GGLPLCVVSRDLAERRLVRVLPEWTPVEGMVVAMFPSRRGLLPSVRALIDFLAAGFAD 302


>gi|110635630|ref|YP_675838.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286614|gb|ABG64673.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 298

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +L+ F  + R+GSF  A+ +L +S  ++S  +  LE  +G+KL  R  R ++LT
Sbjct: 1   MKPSLAELQTFVSIVRTGSFRAASVELEVSPPAVSLSLKQLEDRLGLKLINRSTRSMSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L+   S     ++     L E   +P+G LRIA +    +  +   +  F+  YP
Sbjct: 61  EAGARLYEDLSPALSNIDHAVNNLAELRDRPAGTLRIAASRLAARLYMASLVHGFVRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCRE 179
           +++++L  D+   D+S D  D  +RL   I    ++   +         A P Y  +   
Sbjct: 121 EMKVELWADDNLTDLSEDNFDAGVRLGA-IVDDRMVAIPVGPKARFVVVATPAYWHDHPV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P   ++L  H  + F    P     + W     D  I         VN      +    G
Sbjct: 180 PSHPRDLLAHECVEF--RFPTSRRPYQWMFRRGDEDISIEVNGSTIVNDMEVAAELVRNG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+  L    V    ++  LV  +E  + P    Y  YP     +   +AF++F+   A
Sbjct: 238 LGVGYLLYDQVAEEIESGRLVMALESWLPPRAGHYLYYPSNRLVSRGFQAFKDFVREAA 296


>gi|288937639|ref|YP_003441698.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290512377|ref|ZP_06551744.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|288892348|gb|ADC60666.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289775372|gb|EFD83373.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 315

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 132/292 (45%), Gaps = 9/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  VA  GSFT  A  L  + S +SR ++ LET +G +L  R  R ++LTE GS
Sbjct: 8   LADVEVFLAVAERGSFTAGAVALSSTPSVLSRAVTRLETRLGCQLLRRSTRRISLTEAGS 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  + +  L+  + E Q      SG+++++     G   L   L  +  L+PD+QI
Sbjct: 68  AYLSQVRQAFEVLDNAERETQGQKGALSGRVKLSAPTTWGHYRLPARLALYRQLHPDVQI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           +L + N+++DI  +  D  +R    +  S L+ +KL    +   A+P YL++   PLS I
Sbjct: 128 ELNITNRNVDIIAEGFDLVVRQGH-LPDSGLVAKKLEDAALCLVASPAYLRSTARPLSKI 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSGI 241
            +L  H+ +TF  ++P   +   W+   D       P  S    +  L ++   + G+GI
Sbjct: 187 ADLRHHSCLTF--IMPATGKVAEWVFREDGRDISWLPTSSLHVSDDVLGVVSLALQGAGI 244

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                +IV++      LV ++      S      YP     +   +A    +
Sbjct: 245 CQSYAFIVQEAIARGELVPVLPAFAGRSRPFSVLYPPHKSQSAAARALITLL 296


>gi|218675907|ref|YP_002394726.1| Hypothetical transcriptional regulator, LysR family [Vibrio
           splendidus LGP32]
 gi|218324175|emb|CAV25395.1| Hypothetical transcriptional regulator, LysR family [Vibrio
           splendidus LGP32]
          Length = 312

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 126/314 (40%), Gaps = 22/314 (7%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V   GSF  AA   +LS + IS+ I  LE+ +  +L +R  R  +LT+
Sbjct: 1   MDKLTSMKVFVYVVEQGSFRSAANHFNLSATMISKHIHHLESSLNSQLIHRTTRKQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   +   +  +Q    +P G ++I   +  G  +L   + +FL  +P 
Sbjct: 61  SGQLYYRECKRILEDISNAENLIQTLENQPQGTVKINCPVTYGNKVLAPIVAKFLAHHPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L+N  +D      D  +R+   +  SSL+ R L    M   AAP YL    E  
Sbjct: 121 INVELVLNNDLVDPYSSDIDLIVRIGD-LSDSSLVARYLGDYEMCYCAAPEYLNQHAEIR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN----------------WLATVDRPIGEPRISCLQV 225
            +++L +H  + F     + +   +                         G      L  
Sbjct: 180 VLEDLAQHPSLGFSYSSRRDIIGRDTHIRHIQNSEPQSRDPQSHQATHTAGNKGQVRLMS 239

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           N+   +    + G G+ L P  +V +      L+ I+  +      ++  Y +  + + K
Sbjct: 240 NNGDVLRYAALQGVGVLLQPTILVAEEIERGMLLEILPGMAPLPKPIHLLY-KTKQLSLK 298

Query: 283 LKAFRNFIFLKARD 296
            + F  F+     +
Sbjct: 299 NRTFVEFLLAALSE 312


>gi|109899608|ref|YP_662863.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109701889|gb|ABG41809.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 298

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 132/294 (44%), Gaps = 13/294 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VAR  SFT AA+ + LS+  ++R +  +E  +G++LF+R  R ++LT QG +  
Sbjct: 7   LQSFIEVARCSSFTKAADSIGLSRLQVTRHVQDIEQWLGLRLFHRTTRKVSLTLQGEETL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +   +      + +  G +R+AT I LGQN+L   ++ F+ ++P   IQ++
Sbjct: 67  GFAKQILSSVSDLESRAHSHNHELVGTIRVATPIGLGQNMLFDAIQAFVAIHPKTHIQMV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +    +  +  D A+R         LI R+L+ I     A P Y+    +     +L 
Sbjct: 127 LSDGLSQLVDERVDIALRYIDQ-PHQQLIARRLMHIDSVLCATPGYIAEHAKLNQPSDLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN +               + +       P    +Q N    I++  + G GIA LP  
Sbjct: 186 AHNCLVHSSNPHWR------VVSATSDEKVPVSGNIQANEMGVILKAALRGLGIACLPSD 239

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +      N  LV+++ D  TP   ++  Y         ++AF +F+  +   W+
Sbjct: 240 LANHYLLNRELVQVLPDYNTPGSNLWAVYLSRDHQQNVVRAFIDFLVER---WQ 290


>gi|326794573|ref|YP_004312393.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326545337|gb|ADZ90557.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 313

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 125/291 (42%), Gaps = 10/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F ++   GSFT A+ +L ++ S++S+ I+ LE  + +KL  R  R L +T  G K+
Sbjct: 11  DLATFILIVNEGSFTAASHKLGVTPSALSKLITRLEKALSVKLLERSTRKLVITATGQKI 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     + +  +           + +G+L +A       +++Q  +  FL+ +P+IQ++L
Sbjct: 71  YDQCLVMTNAAQNAVELSDAEHSEAAGELTVAAPEAFLFSVIQPLVVPFLIEHPNIQLKL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +  IDI  D  D A RL       + + + +    +   A+P YL +   P    +L
Sbjct: 131 RVADGHIDILNDKIDIAFRLTDQ-PDENQVMKDIGKTALMVCASPEYLSSKGTPKHPNDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            KH+ +   +     +  F                   VN     +     G GI +  D
Sbjct: 190 TKHDCLYLAENDKDNIWTF---MNSQESFSLSVKGRYAVNHSQMRLNGVKQGLGIGIFHD 246

Query: 247 YIVKDNP---NLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIF 291
           ++VKD     ++V+++ D    S    ++   Y +      +L+ F +F+ 
Sbjct: 247 FVVKDAIDKQDVVQVLPDWHIKSSYHGSIIMQYAQTRYMPTRLRVFIDFMM 297


>gi|77458588|ref|YP_348093.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382591|gb|ABA74104.1| LysR family regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 322

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 123/295 (41%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L+ F +V   G F   A  L + +S++SR+I+ LE  +G++L  R+ R  ++TE 
Sbjct: 15  LDLNDLQYFVMVVDHGGFAPTARALGIPKSNLSRRIALLEERLGVRLIIRNTRHFSVTEL 74

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +  +  +P G LR+     L +  + G +  F+ ++P +
Sbjct: 75  GQTYYDHCRAMLKQAEAAEAAIAMTRAEPGGVLRVTCPTTLLEECVGGIITRFMAMHPRV 134

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ L   ++ +D+  +  D A+R+R  P+Q S L+ R L        A+P  L    EP 
Sbjct: 135 EMHLEASDRQVDVVAEGVDLALRVRPPPLQDSELVSRVLSQRPQCLVASPALLSRLGEPS 194

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +      G   P+ +  +                 L       +    +   G+
Sbjct: 195 EPEDLSRFPSAHHGS--PQQVYSWTLFHQDGSEFTLQHRPQLITKGLPMLRCAAIDSVGV 252

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A +P  +V D      L  ++ D    +  +Y  +         L+   +F+  +
Sbjct: 253 AQMPMSLVHDFIERGQLAVVLPDWAPRTEMIYAVFASRQGMLPSLRMLIDFMAEQ 307


>gi|56552232|ref|YP_163071.1| LysR family transcriptional regulator [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|5354200|gb|AAD42409.1|AF157493_17 transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543806|gb|AAV89960.1| transcriptional regulator, LysR family [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 303

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 130/294 (44%), Gaps = 6/294 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D++   +F  VA  GSF  AAE + LS+ ++S+ +S LE  +G  LF R++R ++L
Sbjct: 1   MKLPDFEAWAIFAKVAELGSFARAAEAIQLSKPTVSKAVSRLEQSLGSALFNRNSRHISL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G  L    +++  + E  + E +    +PSG ++IA     G   L   L +FL  Y
Sbjct: 61  TDLGRSLLGHANKIIAEAEMAETEARGGIQRPSGLIKIAAPTTFGLWHLSPILPDFLAQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+I I +   +  +D+  +  D A+R+   +  S+L  R+L  + +   A   YL     
Sbjct: 121 PEIDISIDFSDALVDLVGEGYDIALRIAS-LADSALRARRLCPVRLLLVATSDYLDRIGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   + L+K     + +     M          +     + S  + ++  + +     G 
Sbjct: 180 PQHPKALEKQKSFVYTNSRASGMIRLRH-KESGKEYVLSQSSRFRADNAEAFLPALEAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G  + PD++V +   +  L +++ +    S  +Y           ++    +++
Sbjct: 239 GFGIFPDFMVWEGLKSGKLEQMLPEWDAGSIALYLVTSANPLRPMRVNVLLDYL 292


>gi|115376998|ref|ZP_01464216.1| LysR-family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310824482|ref|YP_003956840.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365976|gb|EAU64993.1| LysR-family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397554|gb|ADO75013.1| transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 310

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 138/294 (46%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L+ F    RSGSF+ AA     + S+ S++++ LE  +G++L  R A+GL LT +G 
Sbjct: 20  WPSLQSFVQSVRSGSFSAAARDAGTTPSAFSKKVARLEAHLGVRLLIRGAKGLELTPEGQ 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L +     +  +E   ++   ++  P G +R++  +D G++ L   +  F   YP +++
Sbjct: 80  ELFQRVDRAFEDVEDACMQATRATE-PRGLVRVSAAMDTGRDWLMPRIPRFARAYPHVEL 138

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D A+R+ +      L++R+L  +     A+P YL+    P   +
Sbjct: 139 EVSLSDRFVDLLAERFDVALRVGE-FDDGRLMRRRLGRMRRCFCASPAYLRARGVPRRYE 197

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  + +     +  +   W       +          ++   + Q  + G G+A L
Sbjct: 198 ELAGHVKLAY----LRGTQRDPWELPSGGRLHPQ--GPFASDNNAGLRQLTLAGLGVAWL 251

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P+  + ++     L  ++E    P   +   +P+      +++AF +F   +AR
Sbjct: 252 PELTIAEDVQRGALQVLLEHPPDPGMPISLAFPQGRLLAPRVRAFLDFFAEEAR 305


>gi|78067702|ref|YP_370471.1| DNA-binding transcriptional activator GcvA [Burkholderia sp. 383]
 gi|77968447|gb|ABB09827.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 328

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 18/305 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      R F   AR  +F+ AA++L+++  ++S Q+  LE E+G++LF R+ + 
Sbjct: 1   MDLRQLPALNAIRAFEAAARHENFSRAADELYVTHGAVSHQVRALEEELGVQLFTRNGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           L LT+ G +  +        +     +++ S      +L ++         +   +  F+
Sbjct: 61  LCLTDAGMRYAQQIRTALMVIADATRDVRASDRDR--RLVVSMLSSFAARFITPRIGTFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P+I ++L   N   D + D  D AIR  +      L    L         AP  L  
Sbjct: 119 ERHPEIDVELQSTNSLTDFARDDVDIAIRFGQG-NYPGLHVEPLFDEVFFPACAPT-LNG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L  +NL+   D + +   D   L T    + EP+   L  +S   ++   +
Sbjct: 177 GKLPQTPADLAHYNLLRSDDELWRPWFDAAGLKT----LTEPKRGILYQDSSNLLL-AAI 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIAL+   +      +  +VR+ +      +  +F  P  L NT +++AFR ++  +
Sbjct: 232 DGQGIALVRRSLAVHDLLDGRIVRLFDIDGPSPWHYFFVCPPPLLNTPRVQAFRTWLLQE 291

Query: 294 ARDWK 298
             ++K
Sbjct: 292 VAEYK 296


>gi|209520361|ref|ZP_03269125.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499193|gb|EDZ99284.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 304

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 130/291 (44%), Gaps = 8/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + ++L +F  V  +GS + AA +L L+++ +S  I  LE EVG  L  R  R L++TE
Sbjct: 6   NVNLNRLAIFVAVIDAGSLSAAAARLGLAKTMVSTHIQRLEAEVGASLLVRTTRRLSVTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  + ++    E     L   +    G LR++   D G  ++   L E    +P 
Sbjct: 66  AGRAFYDASVKILRTAEDALNALGGETSPVRGTLRVSAPNDYGTLVVAPALVELRHTHPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+  ++ +D+  D  D AIRL + +  S+    KL +      A+P +++    P 
Sbjct: 126 VDVELLSSDRYVDLIADGIDVAIRLGR-LADSNYRAVKLGSFVKWLVASPEFVRTWGVPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
           +   L+         L      D   L  VD      R  S L+VN+  +     + G G
Sbjct: 185 TPAALEALPYCALSVLPHPLTLD---LRHVDGKTASVRCASALRVNTADACRAATLAGGG 241

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           I LL D+ + ++     L+R++ +  +   ++   +P       K++A  +
Sbjct: 242 IGLLTDFSISEDVEAGRLIRLLPEWASAPASIQAVFPPTSHPPAKVRALID 292


>gi|170720650|ref|YP_001748338.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758653|gb|ACA71969.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 325

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 120/297 (40%), Gaps = 5/297 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ + ++ L  F   A  GSF  AA +L ++ +++ + ++ LE  +G++LF R  R LTL
Sbjct: 15  MAMESFNALECFIRSAEVGSFAEAARRLSITPAAVGKHVAQLEARLGVRLFQRSTRKLTL 74

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +     S+ +  ++     L  +  +P+G LR++     G+  +   L EFL  Y
Sbjct: 75  TEAGQRFLGEVSDSFRTIQYAVANLASAEGQPAGLLRVSMGTVFGRLYVLPLLGEFLRRY 134

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I      DN+ +D+     D AI     +    ++ R+L   H    AAP YL     
Sbjct: 135 PAITPDWHFDNRQVDLIGQGFDAAIGGGFELP-LGVVARRLTPAHRVLVAAPGYLSQHPV 193

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               Q L +H  I         +  +   +             + ++   +       G 
Sbjct: 194 IEDPQVLGRHAGILIRSPQTGRVRSWPLTSRWQAQQPLLLRQAMTMSDSDAACAVAQQGL 253

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GIAL+             L R++ D       +   Y E     GK +AF  F+  +
Sbjct: 254 GIALVSLPFAVPYLQAGQLQRVLPDWYVDDGHISLYYAEHKLLPGKTRAFIEFVQEQ 310


>gi|152988323|ref|YP_001348343.1| transcriptional regulator PtxR [Pseudomonas aeruginosa PA7]
 gi|150963481|gb|ABR85506.1| transcriptional regulator PtxR [Pseudomonas aeruginosa PA7]
          Length = 312

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 137/295 (46%), Gaps = 9/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + + L  F  +A   SFT AAE L LS+S +S Q+  LE ++GI+L  R  R +TLT+
Sbjct: 10  HLNLNHLYAFVAIAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTD 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L  V   +  +L+    ++++   +PSG+LRI    D  +  +      F+  +P 
Sbjct: 70  RGELLFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPK 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++++ D++  D+     D A+R+  P + S L   KL      A A P YL       
Sbjct: 130 VQVEMLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPEYLAGLPPLR 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L++   I    L       +NW     R     +    L  N+ L++ +  + G+G
Sbjct: 189 QPCDLERCEWIGHTRLS----TPWNWTFERQRERATVQTRGRLLANNTLAVYRLVLDGAG 244

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++LP ++V        LV ++ D   P   +Y  YP A     +++AF   +  
Sbjct: 245 VSVLPSFLVARELARGRLVHLLPDWRLPQGGIYALYPSARYMPVRVRAFIESLRE 299


>gi|91780897|ref|YP_556104.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91693557|gb|ABE36754.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 329

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 126/297 (42%), Gaps = 8/297 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D  D+ R F +VA +G F+ AA QL +  S ++++++ LE E+G  LF R  R + LT
Sbjct: 24  TMDAIDQARAFLLVAETGGFSSAARQLRVVPSVVTKRVTQLEAEIGRPLFVRTTRRVELT 83

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G        ++    +    ++     + SG+L++     L    L   +  FL+ +P
Sbjct: 84  PTGKAALAHARDMVLAYDRMTGDMTGDVSELSGRLKVKAPSALTYLHLAKVINRFLIRHP 143

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L+L ++ ++ + +  D  I    P     + +  L  I    +A+P YL     P
Sbjct: 144 KVTLELLLIDRPVNPATEGFDLVI-TGLPPSYDQIDEIPLFPIQRMLFASPEYLAEMGTP 202

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  ++L  H  + +  L        N        +     S  Q N    + Q    G G
Sbjct: 203 LQPEDLAHHRCLQYSYLSAGMTWTLNGR---HGQVDVHVNSTFQTNDIQVMHQAVTDGLG 259

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I +LP Y  +   +N  L+ ++E+   P F     + ++ +    L A  + I  + 
Sbjct: 260 IGILPGYAAQKALENGRLIAVLENFALPEFWFRAQFAKSHRQRRLLMALIDHIRSEL 316


>gi|27378552|ref|NP_770081.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27351700|dbj|BAC48706.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 305

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 132/295 (44%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F    R GSF+ A  ++ LS +S+SR I  LE ++G++L  R  R L LT+ G 
Sbjct: 4   LQAMELFVSAVREGSFSAAGRRVGLSPASVSRYIGELEAQLGVQLLNRSTRHLGLTDAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              + T +V H +E  +         P G LR+ +    G  +L   +  F  LYP++++
Sbjct: 64  IFFQRTEQVLHGIEDAEAAALSLQTAPRGTLRVHSRTLFGIRVLSPLIPGFQKLYPELKV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L  +   +  D  D   ++ +  +   L+ R+L+       A+P Y+    +    +
Sbjct: 124 ELRLSERRPQLREDEFDVDFQI-QAAKDPGLMLRRLLRSERILVASPDYVGRMPKLREPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++ +HN +T+       +  F     + R I  P  S    N+ + +    V G GIALL
Sbjct: 183 DITRHNCLTYWMGPDDVVWKFMRRNRL-REIVVP--SSFGSNNGVVLCDLAVAGHGIALL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITP----SFTVYFCYPEALKNTGKLKAFRNFIFL 292
            DY V +   +  LVR++             +Y  + ++     K++ F +++  
Sbjct: 240 DDYTVAEQLKSGRLVRLLPGFRVTNSTFDEGIYATFLQSSYLPEKIRVFVDYMAE 294


>gi|307543878|ref|YP_003896357.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307215902|emb|CBV41172.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 295

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 127/300 (42%), Gaps = 13/300 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + L +   V  SG F+ AA +L +  + +SR I  LE E+   L  R  R + LT
Sbjct: 1   MRTRSEDLELLLAVVDSGGFSAAAGRLGVPVARVSRAIQRLERELAAPLLNRTTRSVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+GS+      E    L   +  L     +PSG+LR+        + L   + EF   YP
Sbjct: 61  EEGSEFVARVREGLEALNAAEEGLVTRREQPSGRLRVDAASPFVLHQLVPLVAEFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L   +  I++     D AIR+   ++ S+L  R L    ++  A+P YL     P
Sbjct: 121 SIQLELSASDDIINLLEQRTDVAIRIGA-LEDSTLHARPLGRSPLYLVASPAYLDTHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL +H  + F             LA+ D          L  +S   +   C+ G G
Sbjct: 180 TAPAELGRHERLGFIGPATLNRWPIEGLASWDI------TPTLAASSGEVVRHLCLAGHG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L +++++   D   L  +++D      P   V   Y      + +++AF + +  + 
Sbjct: 234 IAYLSNFMIRADIDAGRLETVLDDYTLHGGPRERVQAVYYRNTAMSSRIQAFLDVMAPRL 293


>gi|294625560|ref|ZP_06704186.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600125|gb|EFF44236.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 303

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 128/291 (43%), Gaps = 8/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +R+F  +    SFT AA  + + +S+ ++ I+ +E  +G++L  R  R +  T 
Sbjct: 1   MDRFDAMRLFVRIVERRSFTAAANDMQIPRSTATKVIAEMEARLGVRLLQRTTRVVRPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+    +   ++  +   +   V P G LR+     L ++ L   L  F   YP 
Sbjct: 61  DGELFHQRCMRILDDVDDAEGGFRG--VAPKGLLRVEVQGTLARHFLLPGLPAFFAHYPQ 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +   ++ +D+  +  DC +R   P++ S L+ R++  +     A P YL+    P 
Sbjct: 119 IQLVMSESDRWVDLVEEGIDCVLRYG-PLRDSELVARRVAMLERLTCATPQYLQRFGLPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++ L+ H ++    +    +       T          S L V    S +    LG GI
Sbjct: 178 QLEALEHHRMVGLRSITTGVVTPLE-FQTAQGLRTFALPSPLSVTGTESYLAGIRLGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           + +P + V  +     LV I+ D   PS  V   Y  A + + +++ F ++
Sbjct: 237 SQVPRFHVAHDLQQGTLVEILRDTPPPSNPVSLLYSRARQLSPRVRVFLDW 287


>gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151282981|gb|ABR91391.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 314

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 138/292 (47%), Gaps = 7/292 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  ++ + +   V  +GSF+ AA +L +  +++SR+I  LET +  ++  R  R L++T
Sbjct: 1   MTDRFESMALLVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +  +++  +  +      P G L I T I  G+  +   + +FL  YP
Sbjct: 61  EAGQAYVAACRRILEEVDEAERAVSGEYAAPKGDLVITTPIVFGRKHVMPVVAQFLKAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++++L +  + +  ++ D A+R+ + +  S+++  ++ TI+    A+P YLK    P
Sbjct: 121 DINVRVVLADHVVHLLEEHVDIAVRVGE-LPDSNMVAARIGTINRVMCASPAYLKKNGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L KH  ITF  L+   +     L    R I  P  S + VN+  + ++      G
Sbjct: 180 KKPDDLSKHQCITFDGLMAPKLWQ---LCENGREINVPVFSRVVVNTAEAAIEAAESDIG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  +  Y + +   +  L  ++ +    ++ +   +        K++AF ++
Sbjct: 237 ITSVLCYQIAERVRDKQLKMVLREYEREAWPINLVHAGQGILPLKVRAFLDY 288


>gi|2501844|gb|AAC21675.1| transcriptional activator PtxR [Pseudomonas aeruginosa PAO1]
          Length = 312

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 137/294 (46%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + + L  F  VA   SFT AAE L LS+S +S Q+  LE ++GI+L  R  R +TLT+
Sbjct: 10  HLNLNHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTD 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L  V   +  +L+    ++++   +PSG+LRI    D  +  +      F+  +P 
Sbjct: 70  RGELLFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPK 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++++ D++  D+     D A+R+  P + S L   KL      A A P YL      L
Sbjct: 130 VQVEMLADDQFSDLVGQRIDLAVRIGWP-RDSGLHASKLCDFQQVAVATPGYLAGLPPVL 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +   I    L       F      +R   + R   L  N+ L++ +  + G+G+
Sbjct: 189 QPHDLARCEWIGHTRLSTPWTWTFE--RQRERATVQTR-GRLLANNTLAVYRLVLDGAGV 245

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++LP ++V        LVR++     P   +Y  YP A     +++AF   +  
Sbjct: 246 SVLPSFLVAREIARGRLVRLLFGWRLPQGGIYALYPSARYMPVRVRAFIESLRE 299


>gi|83644012|ref|YP_432447.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632055|gb|ABC28022.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 300

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 135/302 (44%), Gaps = 10/302 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      LRVF  VA+  +F  A+ +LHLS SS+SRQI+ LE E+ + LF R  R + LT
Sbjct: 1   MIRSLHALRVFLSVAKHLNFAQASAELHLSASSVSRQITELEKELNVALFTRSTRMVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +QG +L+   + +   L+     L++   +  G++ ++         +   L      YP
Sbjct: 61  QQGQRLYEEAAPLVISLDEVSDCLRQQKEEVGGRVSLSAPWWFASYFIAPALAGLRDHYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L  D++ ID +    D  +R  + +  S L+ +K         A+P Y++   +P
Sbjct: 121 DLTVILDCDDRVIDPNEGLHDIYVRFGR-LNDSRLLAKKFGAYEFWLIASPQYIEKYGDP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H L+ +    P     F+  A+  R   +     L  N+  SI+   +   G
Sbjct: 180 KHPKDLHDHRLLAYRFSSPHSSWIFDDGASQQRIAMQ--SPYLLTNNTESILHCALNHGG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPS----FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I LL D+ V ++     L+R+M +           +Y  Y +      ++K   +++   
Sbjct: 238 IGLLADHGVLNSVKRGELIRLMPNYAITPNRFENGMYLVYSKDKAKIKRVKTVIDYLAEH 297

Query: 294 AR 295
            R
Sbjct: 298 LR 299


>gi|218891603|ref|YP_002440470.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218771829|emb|CAW27606.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 312

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 124/298 (41%), Gaps = 6/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L ++  V   G F  A   L + +S+ISR+++ LE  +G++L  R  R   +TE 
Sbjct: 7   FDLNALFIYAKVVEHGGFAPAGRVLGIPKSTISRKVAQLEARLGVRLVQRSTRQFQVTEI 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R    +  + E  +  ++++  +P G +R+  +  L    L   L  F+  YP++
Sbjct: 67  GQAYYRHCVAMTVEAEAAEDVIEQNRSEPCGMVRLTCSTPLLHFELAPMLARFMAQYPNV 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +   N+ +D+  +  D ++ LR  P++ S L+ + L        A+P  L   R P 
Sbjct: 127 ELYVKTFNRRVDVIAEGYDISLSLRFPPLEDSDLVMKVLARSPQVLVASPELLARYRPPE 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     + +     +       +              L  +   ++ Q  + G GI
Sbjct: 187 LPADLSAMPYVGWER--SRLDGSLRLVGADGSSAALNLRPQLLSDDLGTLRQAVLEGVGI 244

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +V  +     LVR++ +       V   +P        ++A  +F+     D
Sbjct: 245 GGLPLCVVSRDLAERRLVRVLPEWTPVEGMVVAMFPSRRGLLPSVRALIDFLAAGFAD 302


>gi|227114671|ref|ZP_03828327.1| DNA-binding transcriptional activator GcvA [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 307

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 126/293 (43%), Gaps = 12/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSSLNEATRKLQSRSA--KGALTVSLLPSFAIHWLVPRLSSFNSDYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D D   D  D AI   +      L   KL   ++    +P  L       +  
Sbjct: 126 RIQAVDRDEDRLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPVLLTGNHPLKTPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   D   +    +     V   + +  I     +    ++Q  + G G+AL 
Sbjct: 185 DLGAHTLLH--DASRRDWLSYTRQLGVQINVQQGPI----FSHSAMVLQAAIHGQGVALA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR++I  +A
Sbjct: 239 NNVMAQTEIEAGRLVCPFNDVLVSRNAFYLVCHDSQAELGKIAAFRHWILARA 291


>gi|90023069|ref|YP_528896.1| LysR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952669|gb|ABD82684.1| transcriptional regulator, LysR family [Saccharophagus degradans
           2-40]
          Length = 312

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 125/298 (41%), Gaps = 7/298 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              ++VF  VA+  SF+ AAE L +S  + +R ++ LE  + +KLF R  R + LTE G 
Sbjct: 14  LQTIKVFIEVAKLHSFSSAAEVLGMSAPAATRAVAELEGRLRVKLFNRTTRLVRLTESGR 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +   LE  +         P+G L +   +  GQ  +   + E+L LY  + +
Sbjct: 74  RFFNSAVAIIEDLEEAEAAAAGLYATPAGTLTVTAPVVFGQKHVIPIVNEYLGLYSGVSV 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +  ++   +  +  D AIR+   ++ S+L   ++ ++      +P Y K    P   +
Sbjct: 134 NAMFYDRITSLLEEELDVAIRIGH-LKDSNLYATQVGSVRRIVCGSPRYFKKRGVPKCPE 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+LI            F      +R    PR   L  N   + ++  V G GI  L
Sbjct: 193 DLHEHDLIFPKTYEGTTTWQFRNGDKTERLKLNPR---LTCNQNGAALRAAVEGHGITRL 249

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             Y V +     NL  I+         V   + E  +   K+++F +    + R+  F
Sbjct: 250 MSYQVGEELEKGNLESILTGYEEAPLPVNVVHLEGRRANAKVRSFIDLAVERLRENPF 307


>gi|167588085|ref|ZP_02380473.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 279

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 121/263 (46%), Gaps = 9/263 (3%)

Query: 38  ISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLR 96
           +  LE  +  +LF R  R ++LT +G   +         L     +++E  S  PSG LR
Sbjct: 1   MQRLEDRLDTRLFQRTTRSMSLTREGELFYENCRPGIDHLAQALDDMRELRSGPPSGHLR 60

Query: 97  IATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLI 156
           I +T   G+ ++   L++F L YPDI ++L+L+++ +D S D  D A R  + ++ S+++
Sbjct: 61  IGSTPGFGRKIIAPLLRDFHLQYPDITLELLLNDRPVDFSADRIDVAFRDGR-MEDSAIV 119

Query: 157 QRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG 216
            R+L+ + M   AAP Y      P  + EL +H  I       +  E   W   VD    
Sbjct: 120 ARQLIPMQMVVCAAPAYAHRYGLPRRVDELAQHRCINLRTASGRVKE---WEFKVDGLAQ 176

Query: 217 EPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFC 272
           + + +     N    +++  + G GIA LP Y V D   +  LV  +          Y C
Sbjct: 177 QAQPAAHHTFNDMDLVVRAVLDGLGIAQLPAYQVCDLLADGRLVSCLGQHAPDDGGHYLC 236

Query: 273 YPEALKNTGKLKAFRNFIFLKAR 295
           Y        +++AF +++  + R
Sbjct: 237 YLSRKHLPTRIRAFIDYMIEQTR 259


>gi|209522145|ref|ZP_03270790.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209497413|gb|EDZ97623.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 305

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 127/294 (43%), Gaps = 10/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  VA  GSF  AA QL++S S ++R +S LE  +GI+LF R  R + LTE G+
Sbjct: 5   FQAMQAFVKVADVGSFAQAAAQLNVSTSVVTRHVSSLEQHLGIRLFQRTTRKVVLTEAGA 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  +LE  +     +S + +G LR+          L     E+   +P + +
Sbjct: 65  QYADGCRVLLAELEEVESRATTASREVAGDLRVVALGSFSLVRLTPLFAEYQARFPQVNL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L  K +D+     D  I     I+S SL+ R+L+  H    AA  YL     P +  
Sbjct: 125 RVTLTEKRVDLLEGGFDVGIVTEHMIRSESLVVRRLIDSHAVPVAAAAYLAQAGHPQTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           EL  H LI         M  F     +  +  D        +   VNS +   Q      
Sbjct: 185 ELAGHRLIAAPFDTTGPMWIFRKGNGDAASASDAGESIAIDASFTVNSMIMQKQAVRGAM 244

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
           GIALLP  +V+D   +  LVR+++D         V   YP       K++ F +
Sbjct: 245 GIALLPLEMVEDELRDGTLVRVLDDYTVLNGDVAVSLVYPSREFVPRKVREFID 298


>gi|187918819|ref|YP_001887850.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717257|gb|ACD18480.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 308

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 125/295 (42%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L VF   A + SFT A  QL +S S++ + IS LE  +G++LF+R  R + LT 
Sbjct: 1   MDRFGSLNVFVRAAETRSFTEAGRQLGISSSAVGKAISRLEGRLGVRLFHRSTRSIALTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  ++E  + EL  ++  P G LR++    +   L+   +  F+  YPD
Sbjct: 61  EGATFLTRCQRIIGEIEAAENELALANAAPRGLLRVSMP--MVSTLMMPVIAAFMKTYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + +   ++ +D+  +  D   R    I  S+L+ R + T       +P Y      P 
Sbjct: 119 IVLDIDFSDRMVDVIEEGFDVVTRTGDAI-DSTLVTRTMGTYRHVIVGSPAYFAQRGVPS 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY-LSIMQYCVLGSG 240
             ++L +H  +      P   +   W    D  +    +    + +    +        G
Sbjct: 178 EPEQLREHACLQH--RFPTTNKLRRWPLMRDGELLNIDLPTTAIATAVEPLTMLAEQDLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +A +PD+ ++      +LV +++            +P   + + K + F +++  
Sbjct: 236 LACVPDFTIRAQLARGSLVAVLQTYTDTPTVFRALWPSGRQISPKARVFVDYLSE 290


>gi|77458830|ref|YP_348336.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382833|gb|ABA74346.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 302

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 129/293 (44%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A   L + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLGARLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R    +  + E     +   S +P G+LR+++   L   +L   +  FL  YP +Q
Sbjct: 63  ERYLRHCQAMLLEAEMADETVASMSSEPRGRLRVSSPTGLAHEMLPVVISNFLGKYPQVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ L N+ +D+  +  D A+R+R+   +   L+ R+L    M   A+P +++   E   
Sbjct: 123 LEVTLINRRVDLITEGIDVALRVREHGDEEPMLVTRRLRQAQMVVVASPSFVQGL-EINH 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L    ++  G L    M     L    +       + L ++ ++      + G G  
Sbjct: 182 PQDLKNLPVL--GALEADRMVHVRLLDQHGKSCDLALEARLGIDDFIVRKACVLAGQGFT 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLP    +   +N  LV+++ D   P   +   YP        ++A+ + +  
Sbjct: 240 LLPMMYCETELNNGTLVQLLPDWSLPGGWLQAVYPHRRGVMPAVRAWIDHLVE 292


>gi|313107450|ref|ZP_07793638.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310880140|gb|EFQ38734.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 301

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 122/272 (44%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    +    +   LE     L
Sbjct: 24  RQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYRQRLERILDDLEAADAAL 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
                 PSG LR++  + L    L   +  FL  YPD++++L+L +   D+  +  D A+
Sbjct: 84  TSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELLLQDGRQDLIAEGIDLAL 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R    +  S L+ R L+ +     AAP YL    +PL  + L +H  I F          
Sbjct: 144 RGSDRVADSGLVARPLLVLEHVLCAAPAYLSQHGQPLRPEALREHECIRFS----LSGHA 199

Query: 205 FNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIME 260
             W    +R  I  P     +V+S L++    + G G++L+P   V+       LV ++ 
Sbjct: 200 DRWTFRKERECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPRLYVQAELAEGRLVELLA 259

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                   ++  YP   +  GK + F +F+  
Sbjct: 260 GWKADETAIHAVYPS-RQLAGKTRVFLDFLTE 290


>gi|188990880|ref|YP_001902890.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732640|emb|CAP50834.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 304

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+VF  VAR GSFT AA QL +SQS++S  +  LET +GI+L  R  R +++TE G
Sbjct: 10  NLNDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSMTEAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    +++     L     KP+G +RI T        L   L + L  YPD++
Sbjct: 70  MRLFDTVAPRLEEIDQELSALTAFRDKPAGTIRITTAGHAADAYLWPALSKVLPDYPDLK 129

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    DI  +  D  IRL   +    +         M   AAP Y  +   P   
Sbjct: 130 VEITVDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPRQRMAVIAAPSYFVHHTIPAVP 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL +HN I     +P       W    D    + R+      N   ++++  + G+G+A
Sbjct: 190 AELAQHNCIGL--RLPTHGGLLPWDFEKDGREQKVRVDGQWTFNGSSAMLRAALAGAGLA 247

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+ +V D+     L R+++D   P    Y  YP   +++  LK   + +
Sbjct: 248 FLPETMVLDHIAAGRLRRVLDDWCDPFDGYYAYYPSRRQSSAALKVVIDAL 298


>gi|146308726|ref|YP_001189191.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576927|gb|ABP86459.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 304

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 125/304 (41%), Gaps = 13/304 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A SGS + AA  L +S +  S  +  LE ++ ++L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRTAESGSLSAAARLLDVSPAVASAALKRLEQQLQVRLLARSTRSLRLTPEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  + +L  S     G L+++   DLG+N L   L  F   +P +Q+
Sbjct: 64  LYLVHARLALQSLEEGRQQLIGSQQGICGVLQLSAPSDLGRNTLLPWLDAFQAEHPQLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+  +  D A+R   P + SSL+   +         AAP YL     P ++
Sbjct: 124 RLLLADRVADLFREPVDIALRYGAP-EDSSLVALPVAPDNRRVLCAAPAYLARHGAPRTV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  HN + +  ++   + D     +  R            +      ++ V G G+  
Sbjct: 183 EELGGHNCLLY--MLHGRVHDRWRFQSGKRETLLTVAGNRVSDDADVTRRWAVAGQGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI------FLKA 294
                V D+     L  ++ D       +Y       + +  +   R F+       L+A
Sbjct: 241 KSWLDVADDVREGRLQVLLPDWQGEPTPLYLVCAHRAQLSKAVHLLREFLQRRCQRLLEA 300

Query: 295 RDWK 298
             W+
Sbjct: 301 APWR 304


>gi|264680291|ref|YP_003280201.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210807|gb|ACY34905.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 314

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 129/302 (42%), Gaps = 10/302 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +A  GSF  A   L    S +S+++  LE  +G++L  R  R L  T +G +
Sbjct: 10  DELATLVALADQGSFAAAGRLLARHPSVLSKRMQALERRLGVRLVERTTRQLHFTNEGWR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +  H +   + E  + + +  G+LR++    +G+  +   L +F L YP++ ++
Sbjct: 70  LVEKLRQAAHLIRDAEQEAAQGAQEIRGRLRLSMPATMGRRWISPMLADFSLAYPEVALE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    + +DI  +  D AIR+   +  S L+  +L   +    A+  YL+    P    +
Sbjct: 130 VEYSERIVDIVGERFDAAIRIGN-LADSRLVATRLCDQYRLLCASSSYLERHEAPDRPAD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIA 242
           L +HN + +  L+          A          +     +  N   +++   + G GI 
Sbjct: 189 LVRHNCLGYTGLLDFPQWRLVQSAGKKVASVAESVRVSGSILSNDNEALLHAAIKGVGII 248

Query: 243 LLPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFL--KARD 296
              D+ +  +     LVRI+       +  +Y   P    NTG +KAF+ ++     A  
Sbjct: 249 AGSDWHLMPSIHAGELVRILPQWTLGEAGGIYLLRPSGQYNTGAMKAFKQWVTEAFAAAP 308

Query: 297 WK 298
           W+
Sbjct: 309 WR 310


>gi|221069902|ref|ZP_03546007.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220714925|gb|EED70293.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 295

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 12/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++ VF  V   GSF+ A  +L LS S++S+ I+ LE  +G++LF R A  + LT+
Sbjct: 1   MDQFGEMTVFLRVIEEGSFSGAGRRLGLSPSAVSKLIARLEARLGVRLFERIAAAIRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +    +  V   +E  +  ++ +  + SG +RI T +   + L+   L   L  +P 
Sbjct: 61  EGERFRIASQRVVQAMEQAEACVRVTDAEISGTVRIHTALTTAKYLVAPRLHLLLDRHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +  +L  +  D      D AI   +P +  +LI R L+       A+P YL+    P 
Sbjct: 121 LHLDFVLGTERGDFVRQGIDVAIHSGRPTE-QTLIGRPLMLRPWVIAASPQYLQRFGHPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             ++L +H  + F        +   W    +  +    I S +  N    +    +LG G
Sbjct: 180 QPEDLLQHRCLNFTIRT----QWNRWTLHEEGGLKTIDIPSHIGANQGELLRSLALLGHG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLK 293
           +  L  + +  +     LV ++      S     Y  YP       +++A  +F+  +
Sbjct: 236 VVRLAHFHIAADLERGTLVPLLPQFQERSEDDRFYLLYPRGRSLAPRVRAVVDFLAGE 293


>gi|146312895|ref|YP_001177969.1| DNA-binding transcriptional activator GcvA [Enterobacter sp. 638]
 gi|145319771|gb|ABP61918.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 304

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   +++ +L     +LQ  S    G L ++       + L   L  F   YP+I +
Sbjct: 68  SYFQDIKDIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSAYPEIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   +  
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDKALKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+   D   +  + +     ++    +        +    ++Q  + G G+AL 
Sbjct: 185 DLAQHTLLH--DASRRDWQTYTRQLGLNHINVQ---HGPIFSHSAMVLQAAIHGQGVALA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR +I LKA
Sbjct: 240 NNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILLKA 292


>gi|313500148|gb|ADR61514.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 309

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 135/302 (44%), Gaps = 13/302 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R F  V  +GS    A  L LS +++S+ ++ LE  + ++L  R  R + LT
Sbjct: 1   MDL-LNAIRCFIKVVEAGSIAAGARILGLSPAAVSQNLARLEGHLQVRLLSRTTRSMALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G++ +     V   L   +  +     +P G+L IA+T   G+++L   +  F   YP
Sbjct: 60  PSGAQYYERVKHVERDLALAEQAVTTPDSEPQGRLCIASTSAFGRHVLAPLIPAFSARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++ ++ + +  D ++R+   ++   L+ R++  I     A+P YL++   P
Sbjct: 120 LLSIELVTTDRRVNHAREDVDVSLRIAPQLEDQ-LLARRIARIPFICCASPGYLQSAGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + + L  H  + F   +      + ++    R   E   S L  +   ++ Q  +   G
Sbjct: 179 ATPEALRGHRCLVFRYPVDGRFLRWGFMRDGLRFEAE-FGSVLISDDIDALTQMALHDGG 237

Query: 241 IALLPDYIVKDN---PNLVRIME-------DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L ++IV+ +     LV + E          T    +Y C  +    T K++AF +++
Sbjct: 238 ITRLAEFIVRPHLASGALVPLFEYCDSSQAYAQTEPMDIYLCLADRFAMTTKVRAFMDYL 297

Query: 291 FL 292
             
Sbjct: 298 RE 299


>gi|238763992|ref|ZP_04624948.1| Glycine cleavage system transcriptional activator [Yersinia
           kristensenii ATCC 33638]
 gi|238697809|gb|EEP90570.1| Glycine cleavage system transcriptional activator [Yersinia
           kristensenii ATCC 33638]
          Length = 305

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAADELLVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFTSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNAAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +    + L   +L    +    AP  L          
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLLMGDNGLKVPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +W+A   R +G P+I+  Q    +  + ++Q  V G GI
Sbjct: 185 DLANHTLLH-------DTSRRDWMAYT-RQLGVPQINVQQGPIFSHSVMVVQAAVHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|183600880|ref|ZP_02962373.1| hypothetical protein PROSTU_04480 [Providencia stuartii ATCC 25827]
 gi|188019663|gb|EDU57703.1| hypothetical protein PROSTU_04480 [Providencia stuartii ATCC 25827]
          Length = 313

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 125/293 (42%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S Q+  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQMKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++ +       L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSSINEATRKLQARSA--KGALTVSLSPSFAIQWLVPRLSSFNQAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +    S L   +L   ++    +P  L    +    +
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWSGLRTDRLYAEYLMPVCSPLLLTGAHQLKQPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   ++  ++             +    ++Q  V G G+AL 
Sbjct: 185 DLVNHTLLHDSSR----RDWQAYIRQLELHNIINVQQGPIFSHSAMVIQAAVHGQGVALT 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + K   D   LV    +V+      Y    E   + GK+ AFR +I  +A
Sbjct: 241 NNVMAKNEIDAGRLVCPFNEVLVSKNAFYLVCQENQADLGKIAAFRQWILTQA 293


>gi|116252520|ref|YP_768358.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257168|emb|CAK08263.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 298

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 120/297 (40%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V  SG F  A+  L + +S +SR++S LE  +G +L  R  R   +TE G
Sbjct: 3   DLNDYYYFAAVVSSGGFASASRDLKIPRSKLSRRVSRLEDGLGARLIERSTRHFRVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  +  + E+   P G +R+   + L    + G L EFL  YP I+
Sbjct: 63  QAFYERCQTILQEADRAKSIVTEAQSDPQGVVRMGCPLGLVDISVGGILPEFLERYPKIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+I  ++  D+  +  D  +R   +P   +SL  RKL  I     A+P  ++       
Sbjct: 123 LQIIGSDRRADLINERIDLEVRATNEPETQTSLTMRKLDRIRRILVASPSLVERTGNLNC 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL     +     +      +  +   D          L   S  +I+     G G  
Sbjct: 183 VDELADLPTLAMTSWV--SFHTWELVGPNDAKQVIRHQPRLTCRSMTAILDAARAGLGFG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LL +   + +     LVR++ D  +     Y  +  A      ++   +F+  K++ 
Sbjct: 241 LLLESACEADLQAGKLVRVLPDWQSEESQFYIVFTTAKGMPPAVRVLIDFLVEKSKQ 297


>gi|327393875|dbj|BAK11297.1| transcriptional regulator LysR family YagP [Pantoea ananatis
           AJ13355]
          Length = 299

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 126/303 (41%), Gaps = 13/303 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L VF  VA   +F+ AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPVFIAVAEESNFSKAAARLGVTRSAVSQGIRRLEDTFGTMLVMRTTRAVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +LH+  S     +     E+    V P G LRIA T    + L    +  F    P
Sbjct: 61  EAGERLHKSLSLPLTGINAAFEEIVSDPV-PRGLLRIAVTSIAEEFLSGPLIASFAAANP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +++ +++ DI     D  +RL + I+   +             A+P Y      P
Sbjct: 120 AVTLDIVVTDEEFDIVAAGYDAGVRLGEVIEKDMIAVPLTGEQREMVVASPSYFTANGLP 179

Query: 181 LSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +  ++L  H  I +     IP     F    +      EP+I     N    +++  + G
Sbjct: 180 VHPRDLVHHQCIGWRQSPHIPPYRWPFEENGSAFDLAIEPQI---TTNDLRLMLRLALTG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI L      +   ++  LV +++D +      Y  +P+      KL+A  + +    R
Sbjct: 237 GGITLATQETFRPYIESGELVSVLDDFLPTFPGFYLYFPQRRNMAPKLRALIDHV----R 292

Query: 296 DWK 298
            W+
Sbjct: 293 KWR 295


>gi|325271604|ref|ZP_08138109.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324103262|gb|EGC00604.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 303

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 127/294 (43%), Gaps = 4/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L +R +R  +LTE G
Sbjct: 3   DLNSLYYFTQVVEHGGFAPAGRALDMPKSKLSRRIADLEERLGVRLLHRTSRHCSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E     ++ +  +P G +RI+    L  + +   L  ++L YP ++
Sbjct: 63  QAYYNRCLAMRVEAEGAAEIIERNRSEPRGLVRISCPTTLLNSWVGPMLTRYMLKYPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             +   N+ +D+  +  D A+R+R  P++++ ++ + L          P YL+   +   
Sbjct: 123 QFIESTNRRVDLLHEGFDIALRVRFPPLENTDMVMKVLSNSTQCLVGQPQYLEQLPKGFD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q L     + +G    +   +        R I  P    +  +   ++  + V G GIA
Sbjct: 183 PQLLSTLPSLHWGSAQREYQWELFRGEDSSRSIVIPHKPRMVTDDLFALRHFVVAGVGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP   V+++     LV ++ D       V+  +P        ++A  + +  +
Sbjct: 243 HLPRVAVREDLAAGRLVELIPDWHPRCGIVHAIFPSRRGLLPSVRALIDHLAEE 296


>gi|162147423|ref|YP_001601884.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786000|emb|CAP55582.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 298

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 129/287 (44%), Gaps = 6/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D++R+   + R G  + AA  L L+ S +S +++ LE  +G +L  R  R  TLTE G
Sbjct: 3   DADEMRIVVEIVRQGGLSAAARHLGLAPSVVSDRLARLEQRLGTRLLVRTTRRQTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    +  +  ++E+   P G LRI   +  G+  L   +  F+  +PDI+
Sbjct: 63  RIYLDEATAILAATDAMETRVRETVNAPGGMLRITAPMPFGRVRLAPFVAGFISRHPDIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L+++ +DI  +  D AIR   P+  ++L  R+L+       A+P YL     P + 
Sbjct: 123 IHLTLEDRMVDIVGEGYDIAIR-AAPVVDTALTGRRLMESRRVLVASPAYLSRHGRPETP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +   ++  +C   +      ++         L  +     + + + G G+A 
Sbjct: 182 ADLARHACLV-ANMTGQCRGTWR-FGRGEKARIHRVEGRLASSHSELPVVWALAGLGLAQ 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
              + V+ +     LV +MED      T Y  +  +  ++ K+  F 
Sbjct: 240 KSLWEVEAHLRAGQLVTVMEDWEPDPATFYAIHTVSTVHSHKIALFM 286


>gi|296389029|ref|ZP_06878504.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 301

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 121/272 (44%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    +    +   LE     L
Sbjct: 24  RQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYRQRLERILDDLEAADAAL 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
                 PSG LR++  + L    L   +  FL  YPD++++L+L +   D+  +  D A+
Sbjct: 84  TSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELLLQDGRQDLIAEGIDLAL 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R    +  S L+ R L+ +     AAP YL    +PL  + L +H  I F          
Sbjct: 144 RGSDRVADSGLVARPLLVLEHVLCAAPAYLGQHGQPLRPEALREHECIRFS----LSGHA 199

Query: 205 FNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIME 260
             W     R  I  P     +V+S L++    + G G++L+P   V+       LV ++ 
Sbjct: 200 DRWTFRKGRECIAVPIAGRYRVSSSLAVRDALLAGFGLSLIPRLYVQAELAEGRLVELLA 259

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                   ++  YP   +  GK + F +F+  
Sbjct: 260 GWKADETAIHAVYPS-RQLAGKTRVFLDFLTE 290


>gi|262164546|ref|ZP_06032284.1| transcriptional regulator [Vibrio mimicus VM223]
 gi|262026926|gb|EEY45593.1| transcriptional regulator [Vibrio mimicus VM223]
          Length = 296

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 131/301 (43%), Gaps = 16/301 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 61  AGEEALQRCEQILHQTMELEMRALEQSGSLHGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 121 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATADYLAQHAPIK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           + Q+L +HN +         +    W    D       ++  ++ N   ++ +  +   G
Sbjct: 180 APQDLAEHNCLVH-------ISGNKWDFVRDSEHFSVLVNGNIRANDMGTLCRAALNHKG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  LP  +      +  L  ++ D   PS  ++  Y      T  ++ F +F+  +   W
Sbjct: 233 VIRLPCDLANPLLQSGQLQALLPDYHLPSSAIWAVYLSRSYQTPLVRQFIDFLAER---W 289

Query: 298 K 298
           +
Sbjct: 290 Q 290


>gi|238028641|ref|YP_002912872.1| transcriptional regulator [Burkholderia glumae BGR1]
 gi|237877835|gb|ACR30168.1| Transcriptional regulator [Burkholderia glumae BGR1]
          Length = 304

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 123/289 (42%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR+F  V  +  FT AA+ L LS   +SR I+ LE  +G++LF+R  R ++LTE   
Sbjct: 4   IDSLRIFCSVVEARGFTRAADMLGLSTPVVSRAIASLEKRLGVRLFHRTTRQISLTEAAE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     V   L+  +      + +P+G LR+ +      + L   +  +   YP + I
Sbjct: 64  QFYEGCVRVIADLDALEAGASTQAREPTGVLRVISHATATMHRLMALIASYKEKYPKVNI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L  + +D+  +  D  + L   + S +++ R +  I     A+P YL     P    
Sbjct: 124 DVTLAERPVDLVAEGYDVGLLLPFMLTSDTVVTRLVELIPFELAASPDYLARHPAPTHPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H ++ F   I K    F      D  +  P    ++ N+    +   + G GI +L
Sbjct: 184 QLADHLVVAFSTSIRKPEMRFR---VDDELLVVPFRYEIESNNAQFNLDMVLRGFGIGML 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRN 288
           P   ++++     LV ++           +   Y        K+++F +
Sbjct: 241 PSSGMREHLAAGRLVSVLPGFPLVDMGAEIRLAYSSRTLMPAKVRSFID 289


>gi|330504367|ref|YP_004381236.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918653|gb|AEB59484.1| transcriptional regulator, LysR family [Pseudomonas mendocina
           NK-01]
          Length = 325

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 124/297 (41%), Gaps = 12/297 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F     SGS    A  L +S ++ S+ I+ LE  +G++L  R  R L LT+ G
Sbjct: 12  TLRGLESFVKAVESGSIAAGARLLGISAAAASQNIARLEQSLGLRLLTRTTRSLALTDAG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        V  +LE  +  + +   +P G+LRIA +   G+++L   +  F+  +P I+
Sbjct: 72  ALYFERVQAVLQELELARAAVADLQDEPRGQLRIAASAAFGRHVLAPLIPGFMAQHPRIR 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +L+  +  +D   +  D +I + + +Q   L+ R++ T      AAP YL+    P   
Sbjct: 132 CELLTTDAVVDHIQEGVDLSIHIAQQLQD-GLVARRIATAQTRFCAAPAYLQRAGRPSEP 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ + F          + ++        + R+  +  N   ++ Q    G GI  
Sbjct: 191 EQLRDHDCLLFRFATDGRFLRWGFVREDVHFDAQVRVG-MSSNDIDALAQCAAAGGGITR 249

Query: 244 LPDYIVK---DNPNLVRIMEDVITP-------SFTVYFCYPEALKNTGKLKAFRNFI 290
           L  ++         LV +                  Y C  +  + T K++ F +++
Sbjct: 250 LASFVADPYLARGELVELFSSATPTHGRATSAPLDYYLCVRDRYELTPKVRLFMDYL 306


>gi|167828298|ref|ZP_02459769.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
          Length = 302

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+
Sbjct: 1   MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   LE  +   + +   P G LR+     L +  +   L +FL  YP 
Sbjct: 61  DGEAYYRRCVRLIADLEEAEGAFRAA--APRGLLRVNLQGTLARYFVVPALPDFLARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IRLHIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            +  L  H  + +  +     +      TVD  + E R+ + + V          V G G
Sbjct: 178 ELAALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++  +
Sbjct: 236 IVQVPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRER 291


>gi|148243937|ref|YP_001220176.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146400500|gb|ABQ29034.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
          Length = 311

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 122/295 (41%), Gaps = 7/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
                  F  +  +GS T A+ +++ S  S+SR ++ +E + G  L  R  R +  T+ G
Sbjct: 14  SLSDYETFVAIVEAGSLTAASRRMNRSLQSVSRALANIERDTGANLVRRTTRSMQPTDAG 73

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    E    +     E  E + + +G LRI ++   G   +   +  F+  +P + 
Sbjct: 74  LVFYGRIKEALSDIAAAHTEAAELTREIAGTLRIGSSTLFGPTYVVPTIAAFMRRHPAVA 133

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           IQL+L++   D+     D AIR+ + +  S  +  ++  +   A+AAP YL     P   
Sbjct: 134 IQLVLEDSFQDLLKAELDLAIRIGE-LSDSRAMATRVGALRRVAFAAPEYLLKHGRPKVP 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +            F    +  +P   P  +C   ++  +  +      GI +
Sbjct: 193 GDLRAHCCVIRTLTKSPQRWTFE---SAGKPETIPVAACFSSDNAGACNEAVAEAVGIGI 249

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            P + +    +   +  I+ +   P   V+  +P+A     + +AF +F+  + R
Sbjct: 250 APLWQIAGMLETGRVELILTEYEPPPTPVHVVWPQASLLPTRTRAFIDFLAARLR 304


>gi|116050357|ref|YP_790826.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254235419|ref|ZP_04928742.1| hypothetical protein PACG_01326 [Pseudomonas aeruginosa C3719]
 gi|115585578|gb|ABJ11593.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126167350|gb|EAZ52861.1| hypothetical protein PACG_01326 [Pseudomonas aeruginosa C3719]
          Length = 312

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 124/298 (41%), Gaps = 6/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L ++  V   G F  A   L + +S+ISR+++ LE  +G++L  R  R   +TE 
Sbjct: 7   FDLNALFIYAKVVEHGGFAPAGRVLGIPKSTISRKVAQLEARLGVRLVQRSTRQFQVTEI 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R    +  + E  +  ++++  +P G +R+  +  L    L   L  F+  YP++
Sbjct: 67  GQAYYRHCVAMTVEAEAAEDVIEQNRSEPCGMVRLTCSTPLLHFELAPMLARFMAQYPNV 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +   N+ +D+  +  D ++ LR  P++ S L+ + L        A+P  L   R P 
Sbjct: 127 ELYVKTFNRRVDVIAEGYDISLSLRFPPLEDSDLVMKVLARSPQVLVASPELLARYRPPE 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     + +     +       +              L  +   ++ Q  + G GI
Sbjct: 187 LPADLSAMPYVGWER--SRLDGSLRLVGADGSSAALNLRPQLLSDDLGTLRQAVLEGVGI 244

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +V  +     LVR++ +       V   +P        ++A  +F+     D
Sbjct: 245 GGLPLCVVSRDLAERRLVRVLPEWTPVEGMVVAMFPSRRGLLPSVRALIDFLAAGFAD 302


>gi|170721495|ref|YP_001749183.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759498|gb|ACA72814.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 301

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 126/308 (40%), Gaps = 18/308 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L  F   AR  +F+ AAE+L +  S+ISR +  LET++GI LF R  R L LTE
Sbjct: 1   MDYFSALNAFVEAARQSNFSRAAERLEVKASTISRYVRDLETDLGIALFNRSTRALRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         V  +LE  +      + +P G L++       ++ +   L EF   +P 
Sbjct: 61  GGRTFLVHAQRVLDELEVARAAASSLNDEPRGVLQLNAPPAFARHHIVPALSEFRARFPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L  +   +++    AD AIRL   +  SSL  RK+        AAP        P 
Sbjct: 121 IQVDLTCEESQVNLIDAGADLAIRLG-CLPDSSLKARKIADEQWVLCAAPSLWHEPSGPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L     I     +     D  W +     + +     L+ N   + +     G G 
Sbjct: 180 HPEALADQGFIASSQRL-----DLYW-SHAGETVRQSHTVTLRTNDLEAQLVAAQAGQGP 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFLK- 293
            LLP ++V        LVR +         V    +F YP     + K+++F +F+  + 
Sbjct: 234 VLLPAWLVATAIRQGTLVRWLSAWQCQPGEVGTSLWFIYPPKRIVSSKVRSFIDFMVQRI 293

Query: 294 --ARDWKF 299
             A  W+ 
Sbjct: 294 GEAPYWRL 301


>gi|83719310|ref|YP_441355.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167618205|ref|ZP_02386836.1| LysR family transcriptional regulator [Burkholderia thailandensis
           Bt4]
 gi|257139971|ref|ZP_05588233.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83653135|gb|ABC37198.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 320

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 124/297 (41%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E       P G++RI + +  G++ L   + EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHG-AIPQGRVRINSHVPFGKHHLMPLVPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +       D +D AIR    +  S L+ R+L    M    +P YL+    P +  
Sbjct: 126 DIVLSDAAAGPLDDRSDIAIRSGS-LDDSRLVMRRLGGSRMIVVGSPAYLELNGMPATPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+HN I                A  +          L +    SI +  V G G+A L
Sbjct: 185 DLDRHNCIGLSGNAKAWP-----FAATEGQRLLQWGGNLLLGDNESIREAAVSGLGLARL 239

Query: 245 PDYIVK---DNPNLVRIMEDVIT-PSFTVYFCY--PEALKNTGKLKAFRNFIFLKAR 295
             + V    D   LV ++E         +   +  P       ++ A   F+  + R
Sbjct: 240 ARFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSE-HLPMRVHALLEFLKERIR 295


>gi|308049776|ref|YP_003913342.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307631966|gb|ADN76268.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 305

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 128/295 (43%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L +  + AR GS + AA QL L+ ++ S  +  +E E+G+ LF R  R L LT++G 
Sbjct: 4   LQDLDILVLTARLGSLSAAARQLDLTPAATSAALKRIENELGVALFVRSTRSLKLTDEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     +E    L++     + +  + +G LR++   DLG+  L   L EF   +P + +
Sbjct: 64  RFLSHCAEALALLKSGAEAARSNQSQFAGPLRLSLPSDLGRRTLLPWLDEFQDAHPQLTL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           QL   ++  D+    +D ++R  +P + S+L+   L         AAP Y+  C +P   
Sbjct: 124 QLQFSDRLFDLYQAGSDLSLRYGEP-EDSNLVALPLAPRNRRLLVAAPSYIARCGQPGHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  HN ++F   +     D          +          +    + ++ + G GIA 
Sbjct: 183 SELADHNCLSFH--LDDYRHDRWTFHRDGEALTIKVRGNRSADDGEVVHRWALAGRGIAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                V ++     LVR+  D       +     +  + + ++++ R F+  + +
Sbjct: 241 KSHLDVAEDVAAGRLVRLCSDWQGELAPLNLICADRRQLSPRIQSLRQFLAERCQ 295


>gi|103488617|ref|YP_618178.1| LysR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98978694|gb|ABF54845.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis
           RB2256]
          Length = 308

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 117/295 (39%), Gaps = 5/295 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  VA   SF+ AA  L +S S+IS+ I  LE  VG  LF R  R + LT+ G 
Sbjct: 12  LDGIEAFLRVAERRSFSAAAADLGVSPSAISQTIKALEARVGAPLFMRTTRSVGLTQAGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +  Y  L       +    +P+G+LRI       Q L +  +  F   YP+I++
Sbjct: 72  MFFERAAPAYSGLADAYEAARNLGNRPAGRLRINLMRGAVQPLFEPIIAGFCETYPEIEL 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D+   D+S    D  +R+ + + +  +  R           AP Y      P + +
Sbjct: 132 EIYADDALSDLSAGGFDAGVRMGESLDADVVAVRLTGPFRFVVAGAPSYFARHGRPATPE 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H  + F       M         +R         + VN + + +     G  + ++
Sbjct: 192 ALREHRCVRFRLATGALMPWT--FEKGNREFDVAVTGPVIVNDWSASLVAMRTGVALGMM 249

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            + +     D   +  ++ D    +  ++  YP   +   KL+AF +++     D
Sbjct: 250 AEPMATAMVDAGEIELVLTDYAASTSGLFLYYPGRKQVMPKLRAFIDYVRDNLPD 304


>gi|17548529|ref|NP_521869.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430776|emb|CAD17459.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 305

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 126/292 (43%), Gaps = 6/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  V  +G F+ A     + +S +SR+I+ LET++G +L  R +  +++T  G 
Sbjct: 4   FDDLYLFTRVVEAGGFSAAERATGIPKSRLSRRIAALETQLGTRLLQRSSHRVSVTPVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++R   E+       +     +  +P+G LR+ T+  L + L+ G L  F    P ++I
Sbjct: 64  AVYRHAREMADASAAIEALAGAARSEPAGVLRVGTSPLLAETLVSGWLAAFAQANPKLRI 123

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L + N  +D+     D AIR    P+ S  ++ R L         +P  +    EP + 
Sbjct: 124 ELDVSNTHVDLIEQRIDVAIRAATGPLPSRDVVARHLAASPRVLVGSPALIARVGEPDAP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ELD    +  G L+     D+  L    +    P    +  ++ +++ +  + G G A+
Sbjct: 184 AELDALPCLGQGTLMRS--RDWVLLDARGQRHVMPIRPRMAADNLIALREAAIAGLGFAV 241

Query: 244 LP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP    +       L  ++         ++  YP        ++A  +F+  
Sbjct: 242 LPLHCCHAALSEGRLRTVLRAWTPEPADLHALYPSRAGVPPSVRALVSFLRE 293


>gi|165976207|ref|YP_001651800.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|165876308|gb|ABY69356.1| transcriptional regulator [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 295

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 125/290 (43%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  
Sbjct: 1   MDLNNLRLFVTVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTAL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +   L     +      + SG LRI+T            + EF   YP +
Sbjct: 61  GLQLYEKVYLILDNLTQATQDFIGEQQELSGYLRISTVSACEPIW--AAIAEFQAEYPQV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     ++ +D+  D  D A R+   + + ++I RK++ ++    A P +L     P +
Sbjct: 119 KVHCQATDRVLDLVEDGIDIAFRMGD-LHTENVIARKMMDLNAVLVAHPDFLARHGTPKT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L       +     +  +    L   ++ +    I     N   +I         I 
Sbjct: 178 PQDLTALPFACWA----RAGQKSATLQLGEQAVKIEPI--FTSNDVYAIAHQAKNAHAIC 231

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LPDY+ ++      LV +M D  T ++ ++  YP     +  +K F  F
Sbjct: 232 QLPDYMAQELTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGF 281


>gi|83747096|ref|ZP_00944140.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83726226|gb|EAP73360.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 326

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 127/293 (43%), Gaps = 7/293 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D   ++ +F  V   G+F  AA +L L+ SSIS+ +  LE E+G+ L +R  R L+LT
Sbjct: 28  NMDVLKRMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLT 87

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +   + V H     Q ++     +P+G+LRI    +L    L   L++F+  +P
Sbjct: 88  EAGRVYYEECANVVHAAARGQQKVAALRDEPAGELRITAPSELAHQHLVPALRDFIAAHP 147

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++  L ++ ID+     D A+R+ + ++ SSL+ R++        AAP YL+    P
Sbjct: 148 RLAVRFELGDEKIDLVEHRVDLAVRIGE-LRDSSLVARQIAWFDELICAAPAYLERTGPP 206

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + Q L   + + F  L        +   T    +       L  N   ++    + G G
Sbjct: 207 TTPQALADLDWLIFTPLGEPAF--VHLRNTQGHEVRLRVHGRLATNQAQTLKALALDGHG 264

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A L    +        LV ++ D     F VY   P       K+      +
Sbjct: 265 VARLLKADIGTELAQGRLVPLLPDWRLAGFGVYAITPRRDAQPLKVTRCIEHL 317


>gi|26988420|ref|NP_743845.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24983177|gb|AAN67309.1|AE016357_2 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 309

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 135/302 (44%), Gaps = 13/302 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R F  V  +GS    A  L LS +++S+ ++ LE  + ++L  R  R + LT
Sbjct: 1   MDL-LNAIRCFIKVVEAGSIAAGARILGLSPAAVSQNLARLEGHLQVRLLSRTTRSMALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G++ +     +   L   +  +     +P G+L IA+T   G+++L   +  F   YP
Sbjct: 60  PSGAQYYERVKHIERDLALAEQAVTTPDSEPQGRLCIASTSAFGRHVLAPLIPAFSARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++ ++ + +  D ++R+   ++   L+ R++  I     A+P YL++   P
Sbjct: 120 LLSIELVTTDRRVNHAREDVDVSLRIAPQLEDQ-LLARRIARIPFICCASPGYLQSAGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + + L  H  + F   +      + ++    R   E   + L  +   ++ Q  +   G
Sbjct: 179 ATPEALRGHRCLVFRYPVDGRFLRWGFMRDGLRFEAE-FGTVLISDDIDALTQMALHDGG 237

Query: 241 IALLPDYIVKDN---PNLVRIME-------DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L ++IV+ +     LV + E          T    +Y C  +    T K++AF +++
Sbjct: 238 ITRLAEFIVRPHLASGALVPLFEYCDSSQAYAQTEPMDIYLCLADRFAMTTKVRAFMDYL 297

Query: 291 FL 292
             
Sbjct: 298 RE 299


>gi|116696232|ref|YP_841808.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530731|emb|CAJ97078.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 342

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 122/287 (42%), Gaps = 6/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F  +  +GS + AA QL  +Q ++SR++  LE  +G++L  R    + LTE G 
Sbjct: 30  IELLQTFVRIVEAGSLSMAAAQLQTTQPTVSRRLQTLERLLGVRLLQRSTHAMKLTEDGE 89

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    E+       + +++     P+G LR+      GQ LL G L  +L   P++ +
Sbjct: 90  RCYERAKELVADWTMFEADVRGVGHAPAGTLRVVVPHAFGQELLVGPLAGYLQQCPEVSV 149

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D   +  DCAI + + +    ++  +L  +     AAP   +    P   +
Sbjct: 150 EWLLHDRTPDFIAEAIDCAIHVGE-VHEPGVVAVRLADVPRAVIAAPSLFEGKPLPRRPE 208

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+    +         +   N      + I       +  +S  ++     LG G+A+ 
Sbjct: 209 DLEDLPWLALRTFYRNEVVLQNTQTLARQGIAFQ--PRMSTDSLYALHSATRLGLGVAVG 266

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             +I  D+     L+ ++         +Y  YP A     KL+ F +
Sbjct: 267 SAWIFADDIASGRLLHLLPQWQADPLPIYLVYPYARFYPAKLRLFVD 313


>gi|330818321|ref|YP_004362026.1| Transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327370714|gb|AEA62070.1| Transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 304

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 123/289 (42%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR+F  V  +  FT AA+ L LS   +SR ++ LE  +G++LF+R  R ++LTE   
Sbjct: 4   IDSLRIFCSVVEARGFTRAADMLGLSTPVVSRAVASLEKRLGVRLFHRTTRQISLTEAAE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     V   L+  +      + +PSG LR+ +      + L   +  +   YP + I
Sbjct: 64  QFYEGCVRVIADLDALEEGASTQAREPSGVLRVISHATATTHRLLPLIASYKRKYPKVSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L  + +D+  +  D  + L   + S +++ R +  I     ++P YL     P    
Sbjct: 124 DVTLAERPVDLVAEGYDIGLLLPFMLTSDTVVTRLMEMIPFELVSSPEYLARAGTPTHPS 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++  H ++ F   I K    F         +  P    ++ N+    +   + G G+ +L
Sbjct: 184 QIADHMVVAFSTSIRKPEMRFR---VDGEALTVPFRYEIESNNAPFNLGLVLKGFGLGML 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRN 288
           P  +V+   ++  LV ++ D         +   Y        K+++F  
Sbjct: 241 PTSVVEEYLESGQLVSVLPDFPLVDMGAEIRLAYSSRTLLPAKVRSFIE 289


>gi|218888868|ref|YP_002437732.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218769091|emb|CAW24851.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 302

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V   GS   AA+ L ++ S++S+QI  LE+   + L +R  R LTLTE
Sbjct: 1   MDSLKGMAIFATVVGKGSMAAAAQSLGMTPSAVSQQIRKLESRAQVTLLHRTTRRLTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  +++    E  +  L E    P G+LR+A  +     L+   LK  L  +  
Sbjct: 61  AGEAFYRSCAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGFSGTLITQALKPLLENHRQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL   ++ ID+  +  D AIR+   +  SSL+ R L        AAP YL+      
Sbjct: 121 LRLQLFFQDERIDLVAERIDLAIRVGN-LADSSLVARHLGDWSSVLCAAPAYLRQRAPIN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L + + I+            +     V +   EPR++    N  L++ Q+ + G G
Sbjct: 180 RPEQLTEVDWISLNTSNHLNHLTLSGPGGEVCKLRLEPRVAA---NGMLAVRQFTLDGLG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  P   V+D   +  L +++ +   P   +Y   P       K+K     +
Sbjct: 237 VSYQPLPEVRDALNDGRLQQLLPEWRIPGLGIYAVTPRREAQPAKVKVAIEAL 289


>gi|107101860|ref|ZP_01365778.1| hypothetical protein PaerPA_01002905 [Pseudomonas aeruginosa PACS2]
          Length = 312

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 124/298 (41%), Gaps = 6/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L ++  V   G F  A   L + +S+ISR+++ LE  +G++L  R  R   +TE 
Sbjct: 7   FDLNALFIYAKVVEHGGFAPAGRVLGIPKSTISRKVAQLEARLGVRLVQRSTRQFQVTEI 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R    +  + E  +  ++++  +P G +R+  +  L    L   L  F+  YP++
Sbjct: 67  GQAYYRHCVAMTVEAEAAEDVIEQNRSEPCGMVRLTCSTPLLHFELAPMLARFMAQYPNV 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +   N+ +D+  +  D ++ LR  P++ S L+ + L        A+P  L   R P 
Sbjct: 127 ELYVKTFNRRVDVIAEGYDVSLSLRFPPLEDSDLVMKVLARSPQVLVASPELLARYRPPE 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     + +     +       +              L  +   ++ Q  + G GI
Sbjct: 187 LPADLSAMPYVGWER--SRLDGSLRLVGADGSSAALNLRPQLLSDDLGTLRQAVLEGVGI 244

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +V  +     LVR++ +       V   +P        ++A  +F+     D
Sbjct: 245 GGLPLCVVSRDLAERRLVRVLPEWTPVEGMVVAMFPSRRGLLPSVRALIDFLAAGFAD 302


>gi|330982159|gb|EGH80262.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 306

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 133/295 (45%), Gaps = 7/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +RVF  +   G F  AAE LH+ ++S++  I  LE  +G++L  R  R ++ T 
Sbjct: 1   MDRFNAMRVFTRIVELGGFARAAESLHMPRASVTVLIKQLEAHLGVQLLQRTTRQVSATP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   L+  +     +  +P G LR+   + LG+ ++   L EF   YP 
Sbjct: 61  DGKAYYQRCVSLLADLDDAEASFSATGAEPKGLLRVDLPVSLGRMIIIPALPEFSRRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++ + ++ +D+  +  DC +R    +   +L+ R L ++     A+  YL     PL
Sbjct: 121 IRLEIGMSDRPVDLIREGVDCVLRAGAAL-DETLVARPLGSLTQITCASREYLAQHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++QEL +H +I +            ++A     +       + VNS    +  C  G G+
Sbjct: 180 NLQELAQHQVIEYFSTSTGKRYGLEFMAD-GMGVEHASACSIAVNSADGYVAGCEAGFGL 238

Query: 242 ALLPDYIVK---DNPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P Y V     +  LV +       P   +   YP   + + +++ F +++  
Sbjct: 239 IQVPRYHVAAQLRSGVLVEVLRLHRPPPPLPLTALYPPHRQLSRRVRVFVDWLVE 293


>gi|330966854|gb|EGH67114.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 302

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 131/299 (43%), Gaps = 10/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  +A   SFT  A    LS ++++R ++ LE+ +GI L  R  R + LTE
Sbjct: 1   MDRIQEMTLFAALAGQTSFTGVARHFGLSTATVTRAVASLESRLGILLVVRTTRNMRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  +L+  +         P+G L +      G   +   L  FL  YP 
Sbjct: 61  AGQRFAEDCRRLLTELDEAENAAAGVHALPAGTLTVTAPQMFGALHVTPVLTRFLNEYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+ IL ++ + +  + AD A+R+   ++ SSL    + ++     A+P YL     P 
Sbjct: 121 VDIRAILVDRVVSMLDEGADVAVRIGA-LRDSSLTAIPVGSVRRMVCASPAYLAQHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L  H+ ++            +W   VD       + S L + S+ + +   +   G
Sbjct: 180 HPDDLQLHSTVS----TSAPERPPHWAFRVDGQDHSVNVASRLSLTSFQASINAALQDWG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  +P Y ++++     LV ++ED       V+  Y E  + + K+++F +F     R+
Sbjct: 236 LTQVPHYQIREHLQNGRLVCVLEDFEIAPEPVHVVYSEGRRGSSKVRSFVDFCVSALRE 294


>gi|295095809|emb|CBK84899.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 299

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 121/285 (42%), Gaps = 9/285 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E   G +L  R  R LTLT  G K+ +
Sbjct: 12  QVYNRICELGSLSAAARALGISRPMVSRYLEQMEKWAGARLVNRSTRKLTLTAAGEKVLQ 71

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            T  +    +  +   Q     PSG LR+A        ++   L + L  YP ++I+L +
Sbjct: 72  KTRTLSQISQEIED--QSVKDLPSGTLRVACAHFTAMQIIAPVLPDLLQRYPQLRIELDV 129

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N  I +  +  D AIR+    +   +I R+L        A+PHYL +   P  +++L +
Sbjct: 130 NNHPISLVGERIDVAIRITDNPE-PGMIARRLGECRSVLCASPHYLASRGVPEQLEDLAR 188

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN + +        + + +L     PI       L  +    +M+  +   GIA+LP+  
Sbjct: 189 HNCLHYSFF---AGQSWRFLTPEGEPITTAVSGNLSASISSLLMEAAINHCGIAMLPERE 245

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                   +LV ++         ++  Y          + F + +
Sbjct: 246 ADAALRQGSLVPVLSAFTPKPIGIFGIYQSRDYQPAAQRVFLDAL 290


>gi|254248195|ref|ZP_04941515.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124874696|gb|EAY64686.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 330

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 128/296 (43%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  V    SF+ AA QL +S ++++R +  LE  + ++L  R  R L+LTE G 
Sbjct: 27  LQAMRVFTRVVELSSFSLAARQLGMSAAAVTRSVGMLEAHLNMRLLNRTTRSLSLTETGR 86

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  KL+  +  L + +  P G LRIA +       L   L  + + +P ++ 
Sbjct: 87  EYLDGCRTIIEKLDEIESNLAQVNRDPHGTLRIAASATSVAAGLGALLSTYRIEHPRVRF 146

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +  +D+     D      + + +S+ + R L ++     A+P YL     P+   
Sbjct: 147 DVTTFDIQVDMVEGGYDVCFCDDQRLVNSTFVSRTLTSVRDVIVASPGYLARHGTPVEPV 206

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL+ H L+T  +   +  E     + VD        + L   S   +    +   GIA L
Sbjct: 207 ELNTHCLLTVSNGAARNWE----FSDVDGSSRIYTGNALASTSNTMVRIAALNHMGIAQL 262

Query: 245 PDYIVKDN---PNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V D+     LV I+E  DV      V   YP     + K+++F +++    R
Sbjct: 263 PHPLVADDLASGALVPILERYDVNGGPRRVSILYPSRNYLSTKVRSFIDYVVDHYR 318


>gi|254477165|ref|ZP_05090551.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214031408|gb|EEB72243.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 298

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 133/297 (44%), Gaps = 11/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  VA + SF   A ++ LS  S +R ++ LE  +G +LF R  R + LT+
Sbjct: 1   MDRLQSLEVFVAVAEAESFAAGARRMGLSAPSATRGVNALEARLGARLFTRTTRSVRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  +++        ++  P G+LRI    + G+  +   L EFL  Y  
Sbjct: 61  VGRRYLEDARHILAQMQAADDAATGAASNPVGQLRITCPNEFGRIYVTPILTEFLDTYAG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  ++++ ++ +++  +  D A+R+ + + SS L   ++  +H     +P YL     PL
Sbjct: 121 VSAEVVMVDRIVNMVEEGFDLAVRIGE-LPSSGLTAVRVGQVHRVVCGSPAYLAAAGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H +++   + P       W    +          L V S  + ++      G+
Sbjct: 180 TPADLLQHKVVSASPISPVS----EWRFGGELRDVVRLRPRLAVTSVAAAIEVARRDWGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y V  +     LVR+++D    +  ++  + E  +   K++AF +F   KAR
Sbjct: 236 CRVLSYQVGPDLEAGRLVRVLQDHEPAALPIHLVHAEGRRAPAKVRAFIDF--AKAR 290


>gi|293392475|ref|ZP_06636795.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291424877|gb|EFE98086.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 301

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 13/297 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   +++F  V  SGS   AA +L ++  S SR+++ LE E+G +L  R  R ++LT++
Sbjct: 1   MNISDVQLFLTVTESGSLAQAARRLGITPMSASRRLAALEQEMGKRLIQRTTRAISLTQE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++       +    E+ +     +S   SG LRI     LG   L   L   L   P++
Sbjct: 61  GAEFIPYARAIAEAEESAKALFLPNSKGASGLLRITAPSGLGNRTLLPLLPTLLANNPEM 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L L ++ +DI     D A+R+  P++ SSLI RK+        A+P YL     P S
Sbjct: 121 RIDLQLSDEVVDIVGRGIDVAVRVA-PLRDSSLIARKIADNPRILCASPDYLALHGSPRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGI 241
           I +L +H+ +   ++         W   +D  I G         ++   I   C+ G G+
Sbjct: 180 INQLGQHHCLRLSNVP-------QWSFDIDGQITGCSVDGRFSCSNVEGIRALCLQGVGL 232

Query: 242 ALLPDYIVKDNPNLVRI----MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A L  + VK    L  +    ++D      +++   P       ++  F + +    
Sbjct: 233 AQLSRWDVKQELALGLLQEVSLQDANPQQLSIWAVVPTVRYLPHRVTVFIDALKAAL 289


>gi|91788790|ref|YP_549742.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91698015|gb|ABE44844.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 309

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 119/293 (40%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   A   SF+ AA +L L+ +++SR ++ LE  +G++LF R  R LTLTE G
Sbjct: 3   TLANLESFVRSAEGRSFSVAARRLELTPAAVSRNVAMLERNLGVRLFQRSTRKLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +           L++    +   S  P G L+++ +   G   +   L  FL  YP I+
Sbjct: 63  ERFLASIGGNLIALQSAIAAVSSDSGDPVGSLKVSMSPTFGIEYIVPLLPAFLDRYPLIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
                +N+ +D+  +  D AI     + S  ++ R L  IH+ A A+P Y+   + P   
Sbjct: 123 PDWHFENRPVDLIAEGYDAAIGGGFEL-SPGVVSRALAPIHLVAVASPAYMAGQQAPADP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L     I         +  +         I       + VN   ++    +LG G+ L
Sbjct: 182 AGLAGFKGIALRSSGTSRVRQWVMRDAAGTEIPASLTESVVVNDPTAMRAAALLGLGVTL 241

Query: 244 L--PDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L  PD +   +   LVR++      +  +   Y        K + F +F+   
Sbjct: 242 LAVPDVLPWLERGELVRLLPRWYVDAGAISIYYATRSLMPAKTRVFIDFVVEA 294


>gi|167582943|ref|ZP_02375817.1| LysR family transcriptional regulator [Burkholderia thailandensis
           TXDOH]
          Length = 320

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 131/297 (44%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V  S  F+ A  +L ++ S+IS+ +  LET +G++L  R  R L LT +G+
Sbjct: 7   FSEMAVFVQVIESCGFSAAGRRLDMTPSAISKFVQRLETRLGVRLLNRTTRKLQLTPEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   +   + E       P G++RI + +  G++ L   + EF   YPDI +
Sbjct: 67  AFYERCVRILEDIADAEREATHG-AIPQGRVRINSHVPFGKHHLMPLVPEFQRRYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++L +       D +D AIR    +  S L+ R+L    M    +P YL+    P +  
Sbjct: 126 DIVLSDAAAGPLDDRSDIAIRSGS-LDDSRLVMRRLGGSRMIVVGSPAYLELNGMPATPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD+HN I          + + ++AT  + + +     L +    SI +  V G G+A L
Sbjct: 185 DLDRHNCIGLS----GNAKAWPFVATEGQRLLQWG-GNLLLGDNESIREAAVSGLGLARL 239

Query: 245 PDYIVK---DNPNLVRIMEDVIT-PSFTVYFCY--PEALKNTGKLKAFRNFIFLKAR 295
             + V    D   LV ++E         +   +  P       ++ A   F+  + R
Sbjct: 240 ARFHVDADLDAGRLVPVLEAFNPGDEEEINAVFVGPSE-HLPMRVHALLEFLKERIR 295


>gi|163803696|ref|ZP_02197557.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
 gi|159172507|gb|EDP57371.1| transcriptional regulator, LysR family protein [Vibrio sp. AND4]
          Length = 301

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 147/296 (49%), Gaps = 9/296 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +   +R F ++A+ G+FT AAE L +S+S +SRQISGLET++G+ L  R  R L LT 
Sbjct: 4   NVNLTDIRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLETQMGVTLLTRTTRTLRLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G + ++   +  + ++   I   +   +  G +R+      +G++++   + EF+L YP
Sbjct: 64  AGERFYQECEKALYNIDQALIAAVDDIQEVRGLIRVNCVGGYIGEDIIAKYVNEFMLEYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L   +  ID+  D  D AIR+ + ++ +  +  KL+ I M   A+P+YL+   EP
Sbjct: 124 NITVDLDFSSPRIDLIEDQFDVAIRMGE-LEDAGFVASKLMMIDMATLASPNYLEIHGEP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ ++L KH  +T           +  +A  +          L+  +  +++   + G+G
Sbjct: 183 VTPKDLAKHRTLT----GSVTRWSYRNVANPNEHSDVIVKGNLRCKNGRALVMGALYGNG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P     +      LV++M+    PS  +   +        +L+ F +++  K
Sbjct: 239 IIRVPLSYCDEEVKQGQLVKVMQGWEIPSVPLSAIFHRDRYQPKRLRTFIDYVKAK 294


>gi|254501340|ref|ZP_05113491.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222437411|gb|EEE44090.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 319

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 137/289 (47%), Gaps = 5/289 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  V    SF    +   L++S+  + ++ LE   G +L  R  R ++LT +G  
Sbjct: 7   NDILIFMSVIDKNSFVAGGKAFGLTRSTAGKAVARLEDHYGTRLLNRTTRAISLTPEGED 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+R   ++   +E T+  LQ S+  P G LRIA    +G+ LL   ++ +L  +PDIQI+
Sbjct: 67  LYRHGMQIRAAIEETETTLQNSAGTPRGTLRIAAPGAMGRKLLLSTVQRYLRDWPDIQIE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++  ++  D  D A+R+        LI R L+       AAP Y  +   P SI++
Sbjct: 127 ISFSDRVENVVADNYDLALRIGVTEPDQGLIMRTLLIDRAVLCAAPSYFADRTRPQSIEQ 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L   +LI FG    K     +    V   +     S L+V++  ++    + G GI LLP
Sbjct: 187 LGPLDLIYFGTHPEKQCWHLSEEEGVWTRVSG--RSRLRVDNASALRDAGLAGLGIVLLP 244

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V+D   N  L  ++ +V   S  +   YP+      +++ F + +F
Sbjct: 245 RLLVEDELANGQLETVLPNVSCGSIPILALYPQRKHLEPRVRKFLDLLF 293


>gi|170750153|ref|YP_001756413.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656675|gb|ACB25730.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 318

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 130/286 (45%), Gaps = 5/286 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A  GS++ AA  L +S S++S+ +  LE  +G+ LF R  R LTLT +G  L   
Sbjct: 14  AFARSASLGSYSAAARSLGISPSAVSKSVQRLEARLGVSLFTRTTRSLTLTPEGRDLQER 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  + E  +     +  +P+G L++A +I +G +LL   L  F   +P + + L L 
Sbjct: 74  ALRLLREAEAIEQAAVAARSEPAGTLKVAASIPVGVHLLGPALPRFRARHPKLSVDLRLS 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D+  +  D AIR+ + +  S L+ R+L    + A+AAP YL     P    +L  H
Sbjct: 134 DRFVDLIEEGIDVAIRVGE-LADSRLVSRRLAPHRLGAFAAPVYLARRGTPRHPDDLAHH 192

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + + F          + +     R    P  + +  +   ++    V G GI + P YI 
Sbjct: 193 DCVNFRFQSTGQALRWPFQVGGRRIEFTPH-AGIVADFSDAVAAVLVAGGGIGISPTYIA 251

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +     LV +++D           +PE+ +    +KAF  F+  
Sbjct: 252 APHVARGALVPVLQDFAVDRSVFTALWPESRRGNPNVKAFLAFLDE 297


>gi|126441649|ref|YP_001057494.1| DNA-binding transcriptional activator GcvA [Burkholderia
           pseudomallei 668]
 gi|126221142|gb|ABN84648.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 321

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G 
Sbjct: 9   LNALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGG 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L     E++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 69  RYAQQVRAALALLADATREVRASERDK--RLVVSTLPSFAARWITPRIGPFIERHPEIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 127 ELRASDSLVDFARDDVDVAIRFGHGV-YPGLHVEPLLDETFFPVCAPT-LNGGMLPETPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 185 DLVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         +VR+ +      +  +F  P +L  T +++A R+++  +   ++
Sbjct: 240 RRSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRSWLLDEIARFR 296


>gi|299533154|ref|ZP_07046538.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718684|gb|EFI59657.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 303

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 73/286 (25%), Positives = 133/286 (46%), Gaps = 8/286 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ ++ +F  V   GS + AA QL ++ S++S+ I  LE E G+ L +R  R LTLT+ G
Sbjct: 3   DFRRMAIFAAVVERGSMSAAARQLDMTPSAVSQHIRQLEQEAGLTLLHRSTRQLTLTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +   + +       + EL     +PSG+LR+A      Q+     L  +L ++P+++
Sbjct: 63  QRFYIQCAAMCEAASRARAELAAEHQRPSGELRLAAPAGFTQHA-APALGRWLAMHPELR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-EPLS 182
           ++L++D+  ID+     D A+R    +Q SS + R L        A+PH++K     P  
Sbjct: 122 LRLLMDDAPIDLIQARVDLALRFGN-LQDSSWVARHLGRSATLLCASPHWIKAHGSTPRH 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY-LSIMQYCVLGSGI 241
             EL +   +           DF W           ++  L V+++  ++ Q+C  G G+
Sbjct: 181 PSELAQLPWLEMS-RSDDAQADFLWRQQDTAQEYRLQVRPLMVSNHRSAVQQFCEAGLGL 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           ALL  + V    +  +LVR++ D       ++           K++
Sbjct: 240 ALLSAHDVAASLETGSLVRLLPDWDMGMLDIWAVTASRDSLPAKVR 285


>gi|269140470|ref|YP_003297171.1| putative DNA-binding transcriptional regulator [Edwardsiella tarda
           EIB202]
 gi|267986131|gb|ACY85960.1| putative DNA-binding transcriptional regulator [Edwardsiella tarda
           EIB202]
 gi|304560262|gb|ADM42926.1| Transcriptional regulator [Edwardsiella tarda FL6-60]
          Length = 306

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 122/298 (40%), Gaps = 10/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  V   GSFT AA QL +S SSIS+ I+ LE  + I+L  R  R ++LTE G 
Sbjct: 4   LKHMAIFARVVECGSFTGAAAQLAMSVSSISQTITKLEHALQIRLLNRSTRRISLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++  + +    +L   +  PSG LRI  +  + QN+L       L  YP + +
Sbjct: 64  IYYQGCRKMLQEAQEVHEQLYAYNNTPSGTLRIGCSATMAQNVLAPISARMLAEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  +R    +Q S L  R L  + M   AA  YL+    P S  
Sbjct: 124 NLVTGVPAPDLIADGLDLVVRAGD-LQDSRLFCRALGAMPMVICAAKCYLQRHGTPESPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  ++ + F     +   D   +A     +          N   +++ +   G+GI  L
Sbjct: 183 ELGSYSWLNFS---GQPAHDLTLIAPEGESLRLMPSGRFHTNDAQTLLSWLNAGAGITYL 239

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARD 296
           P   V D      +        +    VY  Y +      KL+    ++   F +  D
Sbjct: 240 PLMWVIDAVRRKEVEILFPQYQSTPRPVYALYAQKAHLPIKLRLCLEYLSDYFAQMAD 297


>gi|262173275|ref|ZP_06040952.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|261890633|gb|EEY36620.1| transcriptional regulator [Vibrio mimicus MB-451]
          Length = 296

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 131/301 (43%), Gaps = 16/301 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 61  AGEEALQRCEQILHQTMELEMRALEQSGSLHGSIRISAPIGLTQNMLLDAVQTFTDLHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 121 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATADYLAQHAPIK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           + Q+L +HN +         +    W    D       ++  ++ N   ++ +  +   G
Sbjct: 180 APQDLAEHNCLVH-------ISGNKWDFVRDSEHFSVLVNGNIRANDMGTLCRAALNHKG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  LP  +      +  L  ++ D   PS  ++  Y      T  ++ F +F+  +   W
Sbjct: 233 VIRLPCDLANPLLQSGQLQALLPDYHLPSSAIWAVYLSRSYQTPLVRQFIDFLAER---W 289

Query: 298 K 298
           +
Sbjct: 290 Q 290


>gi|150377654|ref|YP_001314249.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032201|gb|ABR64316.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 305

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 133/299 (44%), Gaps = 13/299 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT-LT 60
            D  D +RV   V  +GS +  + +L+    S+SR+++ LE  +G  L  R +R L  LT
Sbjct: 1   MDRLDAMRVLLAVVDAGSLSAGSRKLNAPLPSVSRKVADLERYLGANLIIRTSRNLQQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G        ++   L+  +        +P G L I   I+ G   +     +F+  +P
Sbjct: 61  DAGRDYVDAARKIIADLDEVERRASGEYQRPRGLLTITMPIEFGHRYVLPIALDFMNEHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + L+  ++ + ++ +  D AIRL + +  S+L   K     +   A+P YL+    P
Sbjct: 121 EVTLNLLSLDRSVHLANEQVDVAIRLGE-LADSTLYAVKAGEFRLLTCASPAYLERHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGS 239
               EL KH+ I F +        F W   VD    E    S ++VN+  S +     G+
Sbjct: 180 HHPTELTKHDGIMFHN------RSFFWSFEVDGKSVEAMPRSRIEVNTAASCVTAARNGA 233

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA L DY V +   +  LV+I+ +       ++  Y        K++AF ++   + R
Sbjct: 234 GIARLFDYQVPEEVSSGALVQILREYGGRPKPIHIVYSRQGLLALKVRAFIDWTLPRLR 292


>gi|13940788|gb|AAK50454.1| unknown [Vibrio vulnificus]
          Length = 300

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 128/300 (42%), Gaps = 16/300 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++ F  VA   SFT AAE L LS+  ++R +  +E+ +  +L +R  R ++LT 
Sbjct: 1   MDRLDAIKSFIEVANCRSFTQAAETLSLSRLQVTRHVQEVESWLQQRLLHRTTRKVSLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  +    +++  +S    +G +RI+  I   Q+ L   +  F  L+P 
Sbjct: 61  AGEQAYIRCQRILDEAAALELDAVQSRDSLTGSIRISAPIGFSQHHLIDAVSAFTELHPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++  ++   +  +  D A+R        +LI RKL+ I     A   YL      +
Sbjct: 121 VMVDILASDRFSQLVDERVDVALRYTDQ-PDETLIARKLMDIDAVVCATQGYLDEHEPIV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             ++L  HN +         +    W    D  I E  +   ++ N   +++   + G G
Sbjct: 180 VPEDLANHNCLVH-------LSTHLWRFVADNQISEVSVKGNIRANDLSTLLGAALAGKG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  LP  +         LV ++     PS +++  Y      T  ++ F +FI   A+ W
Sbjct: 233 VIRLPCDLANPLLQQGKLVALLTPYTLPSSSLWAVYLSRSYQTPVVRQFIDFI---AQRW 289


>gi|27367780|ref|NP_763307.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27359353|gb|AAO08297.1|AE016813_49 Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 300

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 128/300 (42%), Gaps = 16/300 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++ F  VA   SFT AAE L LS+  ++R +  +E+ +  +L +R  R ++LT 
Sbjct: 1   MDRLDAIKSFIEVANCRSFTQAAETLSLSRLQVTRHVQEVESWLQQRLLHRTTRKVSLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  +    +++  +S    +G +RI+  I   Q+ L   +  F  L+P 
Sbjct: 61  AGEQAYIRCQRILDEAAALELDAVQSRDSLTGSIRISAPIGFSQHYLIDAVSAFTELHPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++  ++   +  +  D A+R        +LI RKL+ I     A   YL      +
Sbjct: 121 VMVDILASDRFSQLVDERVDVALRYTDQ-PDETLIARKLMDIDAVVCATQGYLDEHEPIV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             ++L  HN +         +    W    D  I E  +   ++ N   +++   + G G
Sbjct: 180 VPEDLANHNCLVH-------LSTHLWRFVADNQISEVSVKGNIRANDLSTLLGAALAGKG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  LP  +         LV ++     PS +++  Y      T  ++ F +FI   A+ W
Sbjct: 233 VIRLPCDLANPLLQQGKLVALLTPYTLPSSSLWAVYLSRSYQTPVVRQFIDFI---AQRW 289


>gi|42522567|ref|NP_967947.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100]
 gi|39575099|emb|CAE78940.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100]
          Length = 312

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 145/298 (48%), Gaps = 8/298 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D +++R F  + +SGSFT AAE L   +S +SR++S LE ++G++L YR  R   LTE
Sbjct: 16  QLDLNQIRTFVKLVQSGSFTKAAEVLKQPKSRVSRRLSALEKDLGVQLIYRTTRQFQLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   LET   E+ ES+ + SG +R+  + D+G   L   + EF   YP 
Sbjct: 76  MGRIYYERARGLIEGLETLTGEVSESTAEISGVIRVTASDDMGVKHLPLIVDEFTRQYPR 135

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++  L L    +D+  +  D  IR+   ++ SSL  RK+ T+     A+P +L+  R   
Sbjct: 136 VRFDLYLTQAYVDLVKESVDVGIRIGN-LKDSSLRARKIGTVRNLLVASPGFLERYRVGE 194

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L     +       +  +     ++  + +       +  N+   ++    LG G 
Sbjct: 195 DLTKLAAAPFLGLT----QQPKLEVVRSSDGKRLTLKTNPIVTANNPEMLLNLARLGKGY 250

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A +P+++ KD   +  +V+I +++     +V    P+  + + K+K F +F + + ++
Sbjct: 251 AFVPEFLCKDELRDGRMVQIHKNLRGDEVSVSLVSPDTKETSQKVKRFMDFAYKRLKE 308


>gi|88798596|ref|ZP_01114180.1| putative transcriptional regulatory protein (LysR family) [Reinekea
           sp. MED297]
 gi|88778696|gb|EAR09887.1| putative transcriptional regulatory protein (LysR family) [Reinekea
           sp. MED297]
          Length = 299

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 134/302 (44%), Gaps = 15/302 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  VA + SF+ +AE+  +  SS+SR+I+ LE  +G  L  R  R ++LTE
Sbjct: 1   MDQLRALRYFASVADTSSFSRSAERFRVPPSSLSRRIADLEAHLGATLLNRTTRSVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +    +   L      ++  S +P G LRI++ +  G++ L+  LK+F   YP 
Sbjct: 61  VGRQYAKQIQPLLQNLAEADDAVRSYSKEPMGTLRISSMVSFGEHKLRPVLKDFSARYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + L +    +  D+ D AIR    + +  ++ ++L+       AAP YL+    P 
Sbjct: 121 IVLDVHLTDTVTTLDKDHIDLAIR-GGYVPNERIVAKRLMGNDFVPLAAPSYLQRHGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
           +  EL +H  + F            WLA +D         + +  N    + +  V G G
Sbjct: 180 TALELRQHRGLYFRTPAGPT----PWLAKIDEQWQNVSGPAVMTTNDGPWLREQAVNGGG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  +P ++ ++      L+ +  D  T       F VY  Y     +  K+K   +++  
Sbjct: 236 IIFMPKWVCEEEIERGQLIELTLDAPTRITPDNQFAVYLLYQTHRYSIPKIKVAVDYLLE 295

Query: 293 KA 294
           + 
Sbjct: 296 RL 297


>gi|92113463|ref|YP_573391.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796553|gb|ABE58692.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 297

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 139/301 (46%), Gaps = 10/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V  +GSF   A +L LS + +S+QI+ LE  +G++L  R  R L LT 
Sbjct: 1   MDRLQAMHIFRAVVDAGSFAGGARKLELSNAMVSKQIAKLEASLGVRLLTRTTRRLQLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +     S +  +L+  +  L E   +  GKLR++  +D G   L   L+ F   +P 
Sbjct: 61  EGERYLNGASRLLDELQELETGLGEQRGEVRGKLRLSAPLDFGVRALIPALQAFECRHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++L+++ +D   +  D  +R+ + ++ SSLI R L+ +  H YAAP YL     P 
Sbjct: 121 VMLDVVLEDRRVDPVAEDFDLVVRIGE-LEDSSLIARPLMDMPRHVYAAPSYLARHGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L  H  + +        E   W   V+      RI   +  N+  ++ +  + G G
Sbjct: 180 HPADLRGHRCLHYS----LAREGQYWHFQVEGAPYRVRIRPVMACNNGRALTEAAIRGMG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +   P ++ +   +   LVR+++       +V+  Y E      +L+A  + +     + 
Sbjct: 236 LVYKPAFLGEPEVEAGRLVRVLDGFSVAPISVHLLYAEREFIPARLRALVDTLLAHFAEA 295

Query: 298 K 298
           +
Sbjct: 296 R 296


>gi|17549347|ref|NP_522687.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431600|emb|CAD18277.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 323

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 115/301 (38%), Gaps = 8/301 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +    +  F      GS   AA    ++  + S+ ++ LE  +G++L +R  R L L
Sbjct: 1   MPINELRAIATFAKAVELGSIRRAAAAQGVTPQAASQALAQLEEHLGVRLLHRTTRSLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G +           L+    + +ES  + +G LRI         +L   +  F   Y
Sbjct: 61  TDEGQRFLEAAQPALAALDRALSQARESKDEIAGPLRIVGPKSSFAPILMPVIDAFCRQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +Q  + LD+   +  +D  D   R+        +I R+L  + +   AAP YL+    
Sbjct: 121 PQVQPDVQLDDGKSNWVLDRVDVGFRIGAS-PDEGVIARRLFPVQLMICAAPSYLEQHGA 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P S+ EL  H    F    P   +   W   +D  I    +S     N     +Q  + G
Sbjct: 180 PKSLDELATHRCSAFRH--PATDQVLPWYLNIDGEIVHRHVSPTFSTNDTELELQAVLAG 237

Query: 239 SGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             I  + +           LV ++   ++    V+  Y        +++AF +    +  
Sbjct: 238 QVIGQVANLAAVTHIRAGRLVPLLLQHMSDHIGVHLYYGSRTAQPRRVRAFIDLAIQQLL 297

Query: 296 D 296
           D
Sbjct: 298 D 298


>gi|323529807|ref|YP_004231959.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323386809|gb|ADX58899.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 341

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 8/290 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSF  A E+L + +S++SR +  LET++  +LF R  R   LT++G +    
Sbjct: 35  AFMAVATEGSFAKAGERLGIGRSAVSRNVQKLETQLSTRLFLRTTRTTNLTQEGERFFEN 94

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            +     +     ++ +     P G LR+ +T+  G+ ++   L +F   YPDI + L+L
Sbjct: 95  CNRGVTHIVEAMNDMLDLREGPPRGFLRVCSTVGFGRKVVAPLLFKFSEAYPDIAVDLLL 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++  D + +  D A R    I+ S +I ++L+ + M   A+  Y +    P S+++L++
Sbjct: 155 DDRPADFAAEQIDVAFR-DGCIEDSCIIAKQLIPMQMLLCASRAYAEERGLPSSLEDLEQ 213

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H+ I           DF     + + +   R   L  N    ++Q  + G G+A +P Y 
Sbjct: 214 HDCINLRFNGRVLEWDFKLDGRMRKYLPNAR---LTFNDANLVLQAVLEGRGVAQMPGYQ 270

Query: 249 VKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + D      LV  +   +      Y CY        +++ F +F+  + R
Sbjct: 271 ISDYLERKELVPALRRYVPDDRGHYICYRCRQNLPSRIRVFVDFMTAEIR 320


>gi|123442527|ref|YP_001006504.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332161933|ref|YP_004298510.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122089488|emb|CAL12336.1| LysR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|325666163|gb|ADZ42807.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 301

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 122/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +  V   G F+ AA  L L +S +SR+++ LE  +G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYYAEVVEHGGFSAAARVLGLPKSKLSRRLALLEERLGVRLIQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  ++ +  +P G +RI   + L Q  +   L +F+   P + 
Sbjct: 63  RTYYEHCKAMLEEAKAAQEAIELTRAEPRGVVRITCPVALLQATVSAMLADFMASCPLVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D   +  D AIR+R  P+Q S L+ + L        A+P  +    E   
Sbjct: 123 LHLESTNRQVDPVAEAIDIAIRVRPPPLQDSDLVLKVLGNRCQCLVASPELIARLGEVKV 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G   P+    +N                L      ++    V G G+ 
Sbjct: 183 PADLTGWPSLGLGQ--PQQEFIWNLDGPEGAHAAVYHQPRLVTADMTTLRSAAVSGVGVV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V +     +L+R++ +       ++  +P        +++  +++ L+
Sbjct: 241 QLPVMMVTEQLAAGDLIRLLPEWSLRHEIIHAVFPSRRGLLPSVRSVLDYLTLR 294


>gi|104780583|ref|YP_607081.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95109570|emb|CAK14271.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 310

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 73/310 (23%), Positives = 136/310 (43%), Gaps = 15/310 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R F  V  +GS    A  L +S +++S+ ++ LET +  +L  R  R + LT
Sbjct: 1   MDL-LNAIRSFIKVVEAGSIAGGARALGISPAAVSQTLARLETHLQARLLSRTTRSMALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             GS  +    E+   L   +  L     +P G+L IA+T   G+++L   +  F   YP
Sbjct: 60  AAGSLYYERVREIDRDLARAEQALSTPDSEPQGRLCIASTSAFGRHILAPMIPAFAARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++ ++ + +  D ++R+   ++  +L+ R +  I     A+P YL +   P
Sbjct: 120 QLSIELVTTDRKVNHAREDVDVSLRITPQLED-NLLARHIARIPFICCASPGYLASAGWP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S + L  H  + F   +      + ++    R    P    L  +   ++ Q  +   G
Sbjct: 179 DSPEALRDHRCLVFRYPVDGRFLPWGFVRDGLR-FEAPFGPVLISDDIDALTQMALNDGG 237

Query: 241 IALLPDYIVK---DNPNLVRIMED--------VITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I  L ++IV+   D   LV + E           T    VY C  +    T K++AF  +
Sbjct: 238 ITRLAEFIVRPHLDAGRLVPLFEFSALSQQAYAQTEPMDVYLCLADRHAMTIKVRAFMAY 297

Query: 290 IFLKARD-WK 298
           +  +  D W+
Sbjct: 298 LEQQLGDTWR 307


>gi|154252816|ref|YP_001413640.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gi|154156766|gb|ABS63983.1| transcriptional regulator, LysR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 297

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 12/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L+ F  VA +G  + AA +L +S+S +SR++  +E E+G++L  R  RG  LTE 
Sbjct: 1   MDIEDLQTFVAVADAGGISAAARRLSVSKSIVSRRLFRIEAELGVQLLARTTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       +    +++T +  L  +    SG+LR+A  + LG       L E  L  P +
Sbjct: 61  GLTFRDHAARATAEIDTARDTLLPAGA-LSGRLRVAIPLSLGPTHFAPVLAEMALRNPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I     ++ +D+  +  DCAIR+   +Q S+L+ +++  I     A+P Y+K    P  
Sbjct: 120 HIHTSYSDRFVDLIAEGFDCAIRVGY-LQDSNLVAKRVGPISGKLVASPDYIKAHGAPEK 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++++  H  +  G    + M+        D+ +        + ++   +      G GIA
Sbjct: 179 LEQIADHQALMQGMETWQFMDG-------DKIVTVQPQGRFKADNATVLAAAAAAGLGIA 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LPD +  D   +  LV +M     PS   Y   P       K++     + 
Sbjct: 232 WLPDCVTHDYVASGALVPVMMRHPVPSAGTYVVRPPGQHPARKVRVLTEMLI 283


>gi|296161721|ref|ZP_06844524.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295888035|gb|EFG67850.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 312

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 118/293 (40%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L     VAR  SF  AA +L +S S++S  ++ LE  +G++LF R  R ++L+E G+
Sbjct: 6   LGELEAVLAVARHRSFRAAATELDVSTSALSHAVAALEARIGVRLFNRTTRSVSLSEAGA 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     +     +     +        SG LRI T++   +         FL  YPD++I
Sbjct: 66  QFVDSVAPAISTIRVAIEQAGSFRDTLSGTLRINTSVGAARQA-MPVFIAFLQRYPDMKI 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+ + + IDI ++  D  IRL + +    +              +P Y    + P +  
Sbjct: 125 DLVTEGRLIDIVVEGFDAGIRLAETVPQDMIAVPFGDQQRFAVVGSPAYFAQHKAPRTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I     +P               I       L ++    +++    G G+  L
Sbjct: 185 DLLAHRCI--RTRMPSGAIYQWEFQRRGETIRIDGKGALTLDEPNLMLEAARAGLGVTYL 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++ V  +     LVR++ED   P   +   YP        L+A  + I  +A
Sbjct: 243 TEWNVAADLEAGTLVRVLEDWTPPLDGLCLYYPGRRHVPAGLRALIDMIHERA 295


>gi|290473569|ref|YP_003466439.1| transcriptional regulator (postitive) of cleavage of glycine (LysR
           family) [Xenorhabdus bovienii SS-2004]
 gi|289172872|emb|CBJ79643.1| transcriptional regulator (postitive) of cleavage of glycine (LysR
           family) [Xenorhabdus bovienii SS-2004]
          Length = 306

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 123/293 (41%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S Q+  LE  +G+KLF R  R L LTE G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQMKSLEDFLGLKLFRRRNRSLLLTEDGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++ +       L   L  F   +P I +
Sbjct: 68  SYYLDIKEIFTAINDATRKLQARSA--KGALTVSLSPSFAIQWLVPRLSGFNQSFPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +      +   +L   ++    +P  L   R      
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWPGMRTDRLYPEYLLPVCSPSLLMGERPLKIPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH L+          +   ++  +D             +    ++Q  V G G+AL 
Sbjct: 185 DLAKHTLLHDSSR----RDWQAYIRQLDMQQQINVQQGPIFSHSSMVIQAAVHGQGVALA 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   D   LV    DV+      Y    +     GK+ AFR +I ++A
Sbjct: 241 NNVMAQNEIDAGRLVCPFNDVLVSKNAFYLVCHDNQAELGKIAAFRKWILMQA 293


>gi|86359503|ref|YP_471395.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86283605|gb|ABC92668.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 298

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 11/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RV   V  +GS +  + +L+    S+SR+++ LE  +G  L  R +R L LT+ G    
Sbjct: 1   MRVLLAVVDAGSLSAGSRKLNAPLPSVSRKVADLERYLGTNLIIRTSRNLQLTDAGRDYV 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   LE  +         P G L I   I+ G   +     +F+  +P++ + ++
Sbjct: 61  EAARKIIADLEEVERRASGEYQMPRGLLNITMPIEFGHRYVLPIALDFVNRHPEVMLNIL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ + +  +  D AIRL + +  SSL   K     +   A+P YL+    P    EL 
Sbjct: 121 SLDRSVHLVNEQVDVAIRLGE-LIDSSLYAVKAGEFRLLTCASPAYLERHGIPQHPTELV 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ I F          F W   ++    E    S ++VN+  + +   + G GIA L D
Sbjct: 180 NHDGIMFHK------RSFFWSFEMEGKRLEVMPRSRIEVNTAANCVAAALNGVGIARLFD 233

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           Y V +   +  LV+I++        ++  Y        K++AF ++   + R
Sbjct: 234 YQVPEEVSSGALVQILKGYDGEPKPIHIVYSRQGLLALKVRAFIDWALPRLR 285


>gi|332525731|ref|ZP_08401879.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332109289|gb|EGJ10212.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 299

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 138/293 (47%), Gaps = 6/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FDW+ LR F  +AR+G  T AA QL +  S++SR+ISGLE  +G  LF R   G   T 
Sbjct: 3   DFDWNDLRAFLAMARTGRLTVAARQLGVDHSTLSRRISGLEAALGTPLFDRRPAGFVPTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +          L ++  + SG +R+ +    G   L   L      +P 
Sbjct: 63  EGERLLPDAEAMEAMALRLTGRLADAGQQLSGSVRVGSPEGFGTYFLGPRLATLATRHPQ 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+   +   +S   AD AI + +P Q   +   KLV   +  YA+P YL+  R   
Sbjct: 123 LELELVAMPRSFSLSKREADLAITMTRPAQ-GRVYAHKLVDYALGLYASPQYLQGRRAIR 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  I + + +    E+ ++L  V R +    +  L++++ +S M     G+G+
Sbjct: 182 QREDLTSHRWIGYVEELMWT-EELDYLPQVQRGL----VPQLRISNVISQMMALAGGAGL 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP ++ +  P LV+++ D +    + +    E      +++    F+  + 
Sbjct: 237 GVLPHFMARQQPGLVQVLADKVRLVRSYWCVTHEDTHELARVRRVVEFLDEQV 289


>gi|227823576|ref|YP_002827549.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227342578|gb|ACP26796.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 314

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 136/299 (45%), Gaps = 10/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F WD L+ F  VAR+G  + AA +L  S +++SR+I  LE  + +KLF R+ RG  LT 
Sbjct: 4   NFTWDDLQFFLAVARTGQLSTAARRLRTSHATVSRRIDRLEFALKVKLFERNPRGYVLTA 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  + E  Q ++ +      G +R++T    G   L   L EF   YP+
Sbjct: 64  MGQRFVETAERIERETEQLQFDISDGMTAQRGVVRLSTLEGFGNFFLSDRLAEFAGRYPN 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+   + + +S   AD A+ L  P ++       L    +H Y A  YL    +  
Sbjct: 124 ISLELVAIQQIMSLSRKEADIAVALAAP-KAGPYHSEVLTPYTLHVYGARSYLARHSKIR 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  +L  H  + +       +ED  +   +D    I     +  Q +S L+ ++    G 
Sbjct: 183 TRNDLSSHRFVGY-------IEDMIFTPGLDYLGEIQPGLRAHFQSSSILTQLKAARQGL 235

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           G+ +LP ++ KD  NL  ++ + I    T +           +++A R+F+    ++ +
Sbjct: 236 GLCVLPYFMAKDETNLEIVLPEEIELKRTYWLICHRDQMAMPRVRAVRDFLVEAVKENR 294


>gi|118593959|ref|ZP_01551314.1| transcriptional regulator [Stappia aggregata IAM 12614]
 gi|118433465|gb|EAV40137.1| transcriptional regulator [Stappia aggregata IAM 12614]
          Length = 294

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 122/286 (42%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  G+ +  A +L + QS+++R +  LE  VG+ L  R  R +TLTE+G   +
Sbjct: 1   MRTFVRVAERGNLSAVARELGVGQSTVTRHVQELEDAVGVPLLSRTTRRVTLTEEGGGYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    + +  E + S    +G +RI+ T  LG   +  ++  F  L+PD+ I L 
Sbjct: 61  TNCVQILRLTDRSVEEARTSRSALAGSIRISCTAALGVLQISKSIFAFQDLHPDVAIDLS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  +  D A RL  P+  SS+  R L        A+P YL     P   QEL 
Sbjct: 121 LTDERIDLVQEGVDMAFRLG-PLTDSSMKLRALGESRRLLVASPDYLARHGRPTVPQELV 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I   ++    + D          +        +V+  L   +  + G GIA    +
Sbjct: 180 GHKAIRMSNVAGSDVLDLQGSDGSRHSVSFD--GNFRVDHGLGAREALIAGRGIAPAHHW 237

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V D      L  ++ D   PS  +            +++    F+
Sbjct: 238 LVDDLLRQGRLETVLPDYSPPSVPLSLLIVPERSGIARVRLLVEFL 283


>gi|119382963|ref|YP_914019.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119372730|gb|ABL68323.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 302

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 5/292 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F   A   SFT AAE L +++S++ + +S LE  +G+KL +R  R L LT+ G 
Sbjct: 7   LSGVHAFVETAHHLSFTGAAESLGMTKSAVGKSVSRLEARLGVKLIHRSTRRLVLTQDGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                      ++E  +  L  +  + +G+LRI      G+ +L   L E  L  P +++
Sbjct: 67  AYLAAARRALEEIEAAEASLSSNHREIAGRLRIDAPAAWGRRVLLPILTEVALAQPGLRL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ ID   +  D  IR  +   ++ LI RKL        AAP YL  C  P   +
Sbjct: 127 SLSLTDRIIDPVAEQVDLVIRFGETADTADLISRKLAEQRAPLVAAPAYLARCGVPAQPE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  +T   +  +    F        P         ++    ++++  + G GIA +
Sbjct: 187 DLLRHCCVT--GISREMPIGFRIARPGCAPQRLRVAPAHEIGDGSAVVEAAIAGLGIAQM 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V D   +  LV ++ +  T    ++  +P       +++   + +  K
Sbjct: 245 PLSLVADALSDGRLVEVLPEFGTVPVGIFALWPRTRHLLARVRHVVDLLAAK 296


>gi|220926215|ref|YP_002501517.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219950822|gb|ACL61214.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 304

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 126/297 (42%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +   V  +GSFT A  +L +   ++SR+++ LE  +G +L  R  R L LTE
Sbjct: 1   MDRLEAMTILVAVVETGSFTAAGRKLGIPLPTVSRKLAELEAHLGTRLLTRSTRRLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  ++   + +       P G+L +   +  G+  +   + EFLL YPD
Sbjct: 61  TGADYVAGCKRILEEIGDIERKASGEYAVPKGELVVTAPVVFGRLHVLPIVSEFLLTYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+L +++  +  D+ D A+R+   +  SS++  ++ T+      +P YL     P 
Sbjct: 121 VDVRLLLSDRNAHLLDDHIDLAVRIG-ILPDSSMMATQVGTVRKVVCGSPSYLAKYGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E+     +TF  L       F             R S L VN+  + +   V G G+
Sbjct: 180 KPDEVSGLPCVTFDVLSSVTSWSFIDGGDQGLRAVSVR-SRLSVNTAEAALDAAVAGVGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y      ++  L  +++    P   V   Y        K++ F +F   + R
Sbjct: 239 TRVLSYQAAGALEDGKLQVVLDAFEPPPIPVSLIYAAQGPLPRKVRTFLDFAAPRLR 295


>gi|167573830|ref|ZP_02366704.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 299

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 120/297 (40%), Gaps = 9/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE E+G  L  R  R L +TE
Sbjct: 6   DVNLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHMQRLEAEIGASLLVRTTRRLNVTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    E         +    G LR++  +D G  ++   L      +P 
Sbjct: 66  AGRAFYDACRDILRATEAALAAAAGDAGPLRGTLRVSAPVDYGSLVVAPALVALRDAHPA 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+ D++ +D+  D  D AIRL + +  S+    K+        A+P ++     P 
Sbjct: 126 LDVELLCDDRVVDLVRDNLDVAIRLGR-LADSNHRAVKIGGFERWLVASPAFVARHGAPA 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L     +    +    +E                      N+  +     + G G 
Sbjct: 185 APDVLGALPYVMLSTVPRTTLE---LERAHGERASVRCRRAFASNTATACRAAVLAGGGF 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +   +   D+     LVR++ D   P   ++  +P     + K++A  +   LKAR
Sbjct: 242 GVATSFSTADDVAAGRLVRVLPDWSFPPGDIHAVFPSTSHPSAKVRALID--VLKAR 296


>gi|148549065|ref|YP_001269167.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513123|gb|ABQ79983.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 312

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 123/300 (41%), Gaps = 5/300 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ + +  L  F   A  GSF  AA +L L+ +++ + ++ LE  +G++LF R  R LTL
Sbjct: 1   MAMESFSALECFIRSAEVGSFAEAARRLSLTPAAVGKHVAQLEARLGVRLFQRSTRKLTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +     S+ +  ++     L  +  +P+G LR++     G+  +   L EFL  Y
Sbjct: 61  TEAGQRFLGEVSDSFRTIQYAVANLASAEGQPAGSLRVSMGTVFGRLYVLPLLGEFLRRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I      DN+ +D+     D AI     +    ++ RKL   H    AAP YL+    
Sbjct: 121 PAITPDWHFDNRQVDLIGQGFDAAIGGGFELP-PGVVARKLTPAHRVLVAAPAYLQRHAP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               Q L +H+ I         +  +   +             + ++   +         
Sbjct: 180 IEDPQALQRHDGILVRSPQTGRVRSWPLTSRWQAQQPLQLRQAMTMSDSDAACAVAEQAL 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIAL+             L+R++ D       +   + E     GK +AF +F+  +  +
Sbjct: 240 GIALVSLPFAVPYLLAGRLLRVLPDWYVDDGHISLYFAEHKLLPGKTRAFIDFVVEQFAE 299


>gi|239994284|ref|ZP_04714808.1| putative transcriptional regulator, LysR family protein
           [Alteromonas macleodii ATCC 27126]
          Length = 298

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 138/300 (46%), Gaps = 22/300 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  V  +GSF+ AA  L+   + +SR ++ LE  + + L  R  R L LTE+G  
Sbjct: 8   EDLEAFLTVVDTGSFSSAANLLNQQVAKVSRAVTRLEDGLDVTLLNRTTRRLELTEEGEL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   +  + LE  +  L+     PSGKLR+        + L   + EF   +PDI + 
Sbjct: 68  FLQYARDGLNILEKGEEALRLLKRAPSGKLRVDAASPFVFHQLAPLVGEFREAFPDITLD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS--- 182
           +   +  ID+     D AIR+   +  S+L  R+L    +H  A+P YL+    P+S   
Sbjct: 128 ITSHDSIIDLLEHKTDIAIRIGD-LSDSNLHARRLGKSKLHIVASPQYLEKY--PISEGE 184

Query: 183 --IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I  L+KH LI F D              +           L+ +S  +I Q C+ G G
Sbjct: 185 DGISTLNKHKLIGFSDSPSLNKWPLKQDINLQ--------YSLRASSGETIRQLCLAGQG 236

Query: 241 IALLPDYIVKDN---PNLVRIM-EDVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IALL  ++V  +    +LV +  +D+++P+   +V   Y +    + ++ AF +FI  + 
Sbjct: 237 IALLSHFMVHKDISAGSLVALFRDDIVSPNRRESVQAVYYKNSAVSSRISAFLDFIQPRL 296


>gi|146307232|ref|YP_001187697.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575433|gb|ABP84965.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 300

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F  +A+  S + AA  L LS S++S  +  LET +G++LF R  R + LTE G +L
Sbjct: 8   DLSIFLSIAQHLSLSRAAIDLGLSPSALSHALRTLETRLGVRLFNRTTRSVALTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +      +  ++    +L     KPSG LRI       Q +L   + +FL  YPD+++ +
Sbjct: 68  YSRVRPAFRDIDDALEDLNNFRDKPSGNLRITAGRPAAQLVLLPMVSKFLQAYPDVRVDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + D+  +D+     D  +R  + +++  +       +      +P +L+    P   Q+L
Sbjct: 128 VTDDALVDVVSAGFDAGVRFGERLEADMVSLAIGPYMRSVVVGSPEFLRQYPTPQKPQDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                I                A V+  I       L ++    ++   + G G+A + +
Sbjct: 188 HGIPCIRHRFPSGSFYRWEFSQAGVELEIDVE--GPLILSDVGLMVDPALQGVGLAYVFE 245

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +V ++     L++++E        ++  YP   +    LKAF  F    ARD
Sbjct: 246 GMVSEHLASGRLIQVLESWCPFYPGLHLYYPSRRQVPAALKAFIEF----ARD 294


>gi|254000400|ref|YP_003052463.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253987079|gb|ACT51936.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 318

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 123/297 (41%), Gaps = 5/297 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F   A+ GS + AA  L +S +  S  +  LE+E+G+ LF R  R L LT +G
Sbjct: 14  NLADLELFITTAQYGSLSAAARSLEISPAVASAALKRLESELGVLLFVRTTRSLRLTAEG 73

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L   +  + ++L     EL        G+L ++   DLG+N++   L EF   +PD+ 
Sbjct: 74  ERLLARSQPLINELRDLADELVAGHSLIRGELSLSLPSDLGRNVILPWLDEFQQQHPDLH 133

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ L ++  D+  +  D AIR  +P  SS +    +        AAPHYL     P S 
Sbjct: 134 LRVQLSDRIADVMREPVDVAIRYGQPPDSSQVALPLVTDNRRVLCAAPHYLATHGTPSSP 193

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +HN + F   +   + +          +          +   ++  + V G GI  
Sbjct: 194 AELSQHNCLCF--RVGDALYNRWRFTRDGEVLDIDVRGNRSADDADAVRHWTVSGYGICY 251

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                V  +     L  I       S  +    P+  + +  ++  R  +  +   +
Sbjct: 252 RSWLDVGRDVTAGRLSVICPQWQGESLPLNLICPDRRQLSPTIRLLREHLQHRFEAY 308


>gi|197123743|ref|YP_002135694.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173592|gb|ACG74565.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 301

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 121/295 (41%), Gaps = 8/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L+ F  VAR  SF+ AA +L +++S++S  +  LE ++ + L  R  R +++T+ G 
Sbjct: 6   FPQLQAFLAVARLRSFSRAARELGVTRSAVSHAVQLLEEQLRVVLLTRTTRSVSVTDTGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L       + ++     E+     +  G++R++        ++   L  F   +P I++
Sbjct: 66  RLMESAGPAFGQVVAALGEVSAKPGEVVGRVRLSVPRLAVPFVIDPVLPTFRARHPRIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++ +DI  +  D  +R    I+   +  R   +        P YL     P   +
Sbjct: 126 DIAISDRLVDIVAEGFDAGVRSSDVIERDMVQVRLTDSFRFVVVGTPDYLARHGTPQRPK 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +TF       +  +  L    R    P    +  +  L  +     G G+A  
Sbjct: 186 DLLGHECLTFRSQTTGALYAWE-LERGRRTWRVPVRGGVVTDDGLLAVSLAEKGMGLAYA 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            + +V++      L R++E         +  +P   + +  L+ F       AR+
Sbjct: 245 FEPMVQEQLRTGRLQRVLEPYAATIAGFFLYFPSRSQRSAPLRLFV----AAARE 295


>gi|53729002|ref|ZP_00134372.2| COG0583: Transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 295

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 125/290 (43%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  
Sbjct: 1   MDLNNLRLFVTVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTAL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +   L     +      + SG LRI+T            + EF   YP +
Sbjct: 61  GLQLYEKVYLILDNLTQATQDFIGEQQELSGYLRISTVSACEPIW--AAIAEFQAEYPQV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     ++ +D+  D  D A R+   + + ++I RK++ ++    A P +L     P +
Sbjct: 119 KVHCQATDRVLDLVEDGIDIAFRMGD-LHTENVIARKMMDLNAVLVAHPDFLARHGTPKT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L       +     +  +    L   ++ +    I     N   +I         I 
Sbjct: 178 PQDLTALPFACWA----RAGQKSATLQLGEQAVKIEPI--FTSNDVYAIAHQAKNAHAIC 231

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LPDY+ ++      LV +M D  T ++ ++  YP     +  +K F  F
Sbjct: 232 QLPDYMAQELTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGF 281


>gi|322614267|gb|EFY11198.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621669|gb|EFY18522.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624530|gb|EFY21363.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628861|gb|EFY25644.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633412|gb|EFY30154.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636012|gb|EFY32720.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639605|gb|EFY36291.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646904|gb|EFY43407.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652205|gb|EFY48564.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654716|gb|EFY51035.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658937|gb|EFY55190.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664496|gb|EFY60690.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668255|gb|EFY64412.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673765|gb|EFY69866.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677826|gb|EFY73889.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681344|gb|EFY77376.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683746|gb|EFY79756.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193866|gb|EFZ79069.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200335|gb|EFZ85417.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202357|gb|EFZ87401.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205591|gb|EFZ90556.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210103|gb|EFZ95006.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216405|gb|EGA01132.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221153|gb|EGA05584.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226378|gb|EGA10586.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230742|gb|EGA14860.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234907|gb|EGA18993.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238946|gb|EGA22996.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241646|gb|EGA25677.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248207|gb|EGA32143.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251209|gb|EGA35082.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256093|gb|EGA39831.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263229|gb|EGA46767.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264269|gb|EGA47775.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271095|gb|EGA54523.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 304

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 138/295 (46%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQL-HLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            +  ++ +F  V  SGSFT AA      +++ +S  I  LE E+G+ L  R  R LTLT+
Sbjct: 2   LNLQRMSLFIAVVDSGSFTAAAAAASGQTKAVVSFNIRQLEKELGVTLLLRSTRRLTLTD 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    + +  +  Q E++ S     G+LRI TT + G+ ++   L +F   +PD
Sbjct: 62  AGVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRITTTPEFGEQVVIPVLAQFSQRHPD 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+ +  +   D+  +  D AIRL   +  S      +    +   AAP +L       
Sbjct: 122 LRIRHMSSSHHADLIAERFDVAIRLGS-LADSRYRAALISRFTILPVAAPQWLARHPVS- 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S++ L +   I    L                 +   +   + V+S  S+M + + GSG+
Sbjct: 180 SLESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEISKAGKISVDSARSLMAFALAGSGV 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ALLP ++V    ++  L+ ++ D   P   +Y  YP+A   + K++AF +F+  +
Sbjct: 240 ALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYPDARHVSTKVRAFIDFLRSQ 294


>gi|254786262|ref|YP_003073691.1| HTH-type transcriptional regulator YcjZ [Teredinibacter turnerae
           T7901]
 gi|237686911|gb|ACR14175.1| putative HTH-type transcriptional regulator YcjZ [Teredinibacter
           turnerae T7901]
          Length = 307

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 129/293 (44%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L +F VVA   SFT AA QL LSQS++S  +  LE  VGIKL  R +R ++ T
Sbjct: 8   MREDLSDLALFMVVAELQSFTRAATQLELSQSAVSHGVRRLEASVGIKLLNRTSRRVSTT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G KL          +     EL+     P G +RI+T+    + LL   L   +  YP
Sbjct: 68  DAGEKLLAALRPGLGMINARIEELRLLGDAPRGLVRISTSKPALRTLLWPKLSAVVRDYP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQI+L L+++  D++ +  D  +RL++ +    +       I + A AAPHY +    P
Sbjct: 128 EIQIELNLESRLTDLAENRFDAGVRLKEFVSPDMIAVPIGPPIRLAAVAAPHYFQQHGTP 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L++H+ +         + D+       + + +        +     ++    G G
Sbjct: 188 EHPDDLEQHDCLALRFHAQAPVYDWE-FEKAGQVLVKKITGPFIFSESGIAIEAAKAGHG 246

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA + +  V D   N +L R++ D   P      CY      +   +   + +
Sbjct: 247 IAFVTEPEVIDGIENGSLRRVLADWCPPFDGYVLCYSGRRNLSSAFRLVIDRL 299


>gi|296116408|ref|ZP_06835022.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977001|gb|EFG83765.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 271

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 111/267 (41%), Positives = 153/267 (57%), Gaps = 2/267 (0%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           L+LSQS++SRQIS LE  + + LF+RHARGL LTEQG  L++   EV+ KL  TQ  L E
Sbjct: 2   LNLSQSAVSRQISALEEALQVPLFHRHARGLILTEQGETLNQTVREVFSKLAMTQSLLTE 61

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
           S  K +G+LR+ TT   G   L   L  F+   PDI I LIL++ D+D+ M  AD A+R+
Sbjct: 62  SKEKAAGRLRVTTTTGFGTCWLTPRLHRFMDTNPDISITLILEDNDLDLGMREADVAVRM 121

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
             P Q   LIQR L    +  YAA  YL     P +++EL+ H L+ FG   P  +   N
Sbjct: 122 HPPRQ-PDLIQRHLADFPLPIYAAQSYLNEHGTPTTLEELNAHKLVLFGGYHPP-VPHIN 179

Query: 207 WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPS 266
           WLA    P  E R + L+VNS  ++      G GI  +P Y     PNLV+I+ +V  P+
Sbjct: 180 WLAETGVPSDERRQARLEVNSLAAMAGAIAAGIGIGSIPLYAANQYPNLVKILPEVPLPT 239

Query: 267 FTVYFCYPEALKNTGKLKAFRNFIFLK 293
              YF YPE L+ + ++  FR+F+  +
Sbjct: 240 VDAYFVYPEELRTSKRVAVFRDFLLAE 266


>gi|258625250|ref|ZP_05720161.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258582469|gb|EEW07307.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
          Length = 300

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 131/301 (43%), Gaps = 16/301 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 5   MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 65  AGEEALQRCEQILHQTMELEMRALEQSGSLHGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 125 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATADYLAQHAPIK 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           + Q+L +HN +         +    W    D       ++  ++ N   ++ +  +   G
Sbjct: 184 APQDLAEHNCLVH-------ISGNKWDFVRDSEHFSVLVNGNIRANDMGTLCRAALNHKG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  LP  +      +  L  ++ D   PS  ++  Y      T  ++ F +F+  +   W
Sbjct: 237 VIRLPCDLANPLLQSGQLQALLPDYHLPSSAIWAVYLSRSYQTPLVRQFIDFLAER---W 293

Query: 298 K 298
           +
Sbjct: 294 Q 294


>gi|157148353|ref|YP_001455672.1| DNA-binding transcriptional activator GcvA [Citrobacter koseri ATCC
           BAA-895]
 gi|157085558|gb|ABV15236.1| hypothetical protein CKO_04171 [Citrobacter koseri ATCC BAA-895]
          Length = 305

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIQWLVPRLSSFNSTYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAKHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILTKA 292


>gi|313110674|ref|ZP_07796541.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|310883043|gb|EFQ41637.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 307

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 124/298 (41%), Gaps = 6/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L ++  V   G F  A   L + +S+ISR+++ LE  +G++L  R  R   +TE 
Sbjct: 2   FDLNALFIYAKVVEHGGFAPAGRVLGIPKSTISRKVAQLEARLGVRLVQRSTRQFQVTEI 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R    +  + E  +  ++++  +P G +R+  +  L    L   L  F+  YP++
Sbjct: 62  GQAYYRHCVAMTVEAEAAEDVIEQNRSEPCGMVRLTCSTPLLHFELAPMLARFMAQYPNV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +   N+ +D+  +  D ++ LR  P++ S L+ + L        A+P  L   R P 
Sbjct: 122 ELYVKTFNRRVDVIAEGYDISLSLRFPPLEDSDLVMKVLARSPQVLVASPELLARYRPPE 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     + +     +       +              L  +   ++ Q  + G GI
Sbjct: 182 LPADLSAMPYVGWER--SRLDGSLRLVGADGSSAALNLRPQLLSDDLGTLRQAVLEGVGI 239

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +V  +     LVR++ +       V   +P        ++A  +F+     D
Sbjct: 240 GGLPLCVVSRDLAERRLVRVLPEWTPVEGMVVAMFPSRRGLLPSVRALIDFLAAGFAD 297


>gi|241764125|ref|ZP_04762161.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241366531|gb|EER61024.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 309

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 128/292 (43%), Gaps = 4/292 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  V R GSFT AA  L +S  ++S  I GLE  +G++L  R  R ++ TE G 
Sbjct: 8   FNDVLAFVHVVREGSFTRAAALLGVSPGALSHAIKGLEARLGVRLLTRTTRKISTTEMGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L+   S  + +++     + E   KP+G +RI        ++L   L + L  YPDI +
Sbjct: 68  RLYASVSPRFEEIDAEVAAVAEMRDKPAGTIRITAAEHAANSVLWPKLSQVLHDYPDIHV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D    DI     D  +RL   +    +  R    + M    +P Y     +P +  
Sbjct: 128 EITVDYALSDIVSQRFDAGVRLGDQVAKDMIAVRVSPDLRMAVVGSPGYFTKYPKPATPH 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +HN I         +  ++      + I          NS  SI++  + G G+A +
Sbjct: 188 DLAQHNCINLRLPTHGSLLPWD-FDKHGKEINFRVAGQWVFNSTTSIVRAALAGYGLAFV 246

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P+ +V ++     LVR+++D   P    Y  YP  L  +  +      +  +
Sbjct: 247 PEDMVLEDIAARRLVRVLDDWCQPYPGYYLYYPSRLHPSSAMSVVVEALRHR 298


>gi|227326520|ref|ZP_03830544.1| DNA-binding transcriptional activator GcvA [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 307

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 126/293 (43%), Gaps = 12/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSSLNEATRKLQSRSA--KGALTVSLLPSFAIHWLVPRLSSFNSDYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D D   D  D AI   +      L   KL   ++    +P  L       +  
Sbjct: 126 RIQAVDRDEDRLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPVLLTGNHPLKTPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   D   +    +     V   + +  I     +    ++Q  + G G+AL 
Sbjct: 185 DLVAHTLLH--DASRRDWLSYTRQLGVQINVQQGPI----FSHSAMVLQAAIHGQGVALA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR++I  +A
Sbjct: 239 NNVMAQTEIEAGRLVCPFNDVLVSRNAFYLVCHDSQAELGKIAAFRHWILARA 291


>gi|254521850|ref|ZP_05133905.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219719441|gb|EED37966.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 296

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 116/297 (39%), Gaps = 4/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + L VF  VA   SFT AAEQL +++S++S+ I+ LE  +G+ L  R  R ++LT
Sbjct: 1   MAIDLNALGVFQRVADCRSFTAAAEQLGVTRSAVSQTIAKLEQSLGVALVLRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L    S    +L              SG+LR+A +      L    L  F   YP
Sbjct: 61  DAGQALLVSVSPALAELGDALEASMRRQSAVSGQLRLAVSSIAEAFLAGPMLAGFAARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q+ + + ++  DI     D  +RL + I    +              +P Y      P
Sbjct: 121 ALQLDITVTDEAFDIVDAGFDAGVRLGEVIAQDMVAVPVSARQRQLVVCSPGYRDAHALP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL  H  I +     +    +       R         +  N    +++  + G+G
Sbjct: 181 AHPRELASHRCIGWRSAPGRAPYRWE-FEERGREFSVDVQPEITSNDMGVMVRLALAGAG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+  +   +       LV +++         +  YP   +   KL+A    +  + 
Sbjct: 240 LAIGMEETWRPWLQRGELVSVLDAYCPRFAGFFLYYPSRRQAEPKLRALVEHVLSEL 296


>gi|108760006|ref|YP_634590.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108463886|gb|ABF89071.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622]
          Length = 312

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 134/293 (45%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + +F  V  +G  T AAE+L L +S++SR+++ LE  +G++L  R+ RGL LTE G 
Sbjct: 8   LDDMLLFTEVVATGGITAAAERLGLRKSTVSRRLAALEERLGVRLIERNTRGLRLTEVGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H   + +  +       L ES V P G LRI  T+ L   LL   + E LL  P +++
Sbjct: 68  DYHAHCARLVAEAREVNRALGESRVTPQGTLRI-ATLSLLGELLTPLIAELLLRNPLLRV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L    +D+  +  D A+R   P+  S+++ R+L  +    YA+P YL     P +  
Sbjct: 127 EVSLAEAHVDLISEEYDVALRTG-PLADSAMVARRLGRLRTGYYASPAYLARQGAPRTSA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  +           D  W     R     P    L+V S  +       G G+  
Sbjct: 186 ELQGHACVVLA----APGTDEVWFFGEGRGAKSLPVTGRLRVPSVRAGQAAARAGLGVVR 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP  +V ++     LV ++E    P   V+  YP   +   K++AF   +  +
Sbjct: 242 LPASLVAEDVRGGLLVPVLETETPPGIPVFAVYPSRRQLPLKVRAFLALLSER 294


>gi|119524024|gb|ABL77403.1| PtrA [Pseudomonas chlororaphis]
          Length = 301

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 139/292 (47%), Gaps = 11/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F V+  +GSFT AA+QL  S+  +S++IS LE +  + L  R  R L+LT  G+ 
Sbjct: 2   DDLAAFAVLIEAGSFTLAAQQLGCSKGQLSKRISALEAQFSVVLLQRTTRRLSLTAAGAA 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  ++E  +  L       +G +R+   + LG+   +G L EF   YP++QI+
Sbjct: 62  LLPQAQALLVQVERARQALARLKDDMAGPVRLTVPVSLGETFFEGLLLEFSRQYPEVQIE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+N   D++ D  D AIR  +      L+ R L+  H    A+P YL+   EP + ++
Sbjct: 122 LELNNNYRDLTRDGFDLAIR-SEVANDQRLVARPLLAWHEMTCASPAYLEQYGEPQTPRD 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H  +       +      WL      +   R+S     N Y  + +  ++G+GIA L
Sbjct: 181 LAEHRCLLNSHYSGR----EEWLYHQQHELLRVRVSGPFASNHYNLLKKAALVGAGIARL 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALK--NTGKLKAFRNFIF 291
           P Y+++    +  L  ++ D  T S  +Y  +P   +     + +   +++ 
Sbjct: 237 PSYLLQAELADGRLRGLLRDYQTRSMPMYLVHPYQYQGGLPRRTQVLADYLI 288


>gi|163758456|ref|ZP_02165544.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
 gi|162284745|gb|EDQ35028.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
          Length = 296

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +RVF  VAR+G    AA +L ++ ++ +R+I+ LET +  +L  R   G  LT +
Sbjct: 1   MDWDDIRVFLAVARAGQILAAARRLGINHATAARRITSLETALDAQLIVRRTNGCGLTGE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    SG +RI      G + L   L      +PD+
Sbjct: 61  GEAFLLHAERMEAEMLAAQATLGRTDSAISGTVRIGAPDGFGVSFLAPRLGSLTARHPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL+   +   +    AD AI + +P +   L+ RKLV   +  YA+  YL+    P  
Sbjct: 121 RLQLVPVPRSFSLPQREADIAITVERPAE-GRLVARKLVDYSLSLYASRSYLEAHGTPKR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H LI++ + +      F+      R I     +  +++S     +    G+G+A
Sbjct: 180 TEDLKEHRLISYVEDL-----IFSPSLQFTREILRNWTAQFEISSATGQTEAVRSGAGVA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +L DYI   + +LVR++ +      + Y  Y E+ ++  +++   + I   A+D K
Sbjct: 235 VLHDYIAGFDSSLVRLLPEHRI-ERSYYMVYHESARDLARVRTVADHISAIAQDHK 289


>gi|221199417|ref|ZP_03572461.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205680|ref|ZP_03578695.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|254255331|ref|ZP_04948647.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124901068|gb|EAY71818.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|221174518|gb|EEE06950.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180702|gb|EEE13105.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 314

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 5/296 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + VF  V   GSFT  A  L  +  ++SR +S LE  +  +L +R  R LT+T+
Sbjct: 1   MDKFQNMSVFAKVVEMGSFTAVANHLDSTVGNVSRAVSALEEALNTRLLHRTTRRLTVTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +   + +   LE  + E +E+  +P G LR+     LG++L+   +  +   +P 
Sbjct: 61  AGRRFYERCAAILADLEHAEAEARETLFEPRGTLRVHCVPGLGRHLVTRAVLAYRKQFPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+L  +  ++  D  D +I + + +  S+ + +K+ + H    A+P YL+    P 
Sbjct: 121 VAVDLLLQQRMPNLLEDQLDVSIVISRTLPDSAYVSQKIGSSHCVLAASPAYLEQHPAPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L +H  I     +    ++++  +  D     P    L VN   S+      G+GI
Sbjct: 181 DAEALAEHACILLT-TVDYAPDEWHLTSAADSVTFRPIGPHLCVNDMESMAVALRDGAGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L+  +   D   +  LVR++ +  T S  VY  +        K+K F   +  + 
Sbjct: 240 GLIAGFSAIDDLRDGTLVRVLPEYHTHSRNVYAVHSSRQFVDAKVKRFVEILKDQV 295


>gi|262165145|ref|ZP_06032882.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           mimicus VM223]
 gi|262024861|gb|EEY43529.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           mimicus VM223]
          Length = 323

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 22  LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 81

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L     +L E S    G L I+         L   L +F    PDI +
Sbjct: 82  SYFLDIKDIFSSLAEATDKLLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDV 139

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +   +++
Sbjct: 140 RIKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPALLLGNKPMETLR 198

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+   A  +             +    ++Q    G G+AL 
Sbjct: 199 DLSFHTLLH-----DTSRKDWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALG 253

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 254 NNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 307


>gi|238797363|ref|ZP_04640863.1| LysR-family transcriptional regulator [Yersinia mollaretii ATCC
           43969]
 gi|238718794|gb|EEQ10610.1| LysR-family transcriptional regulator [Yersinia mollaretii ATCC
           43969]
          Length = 301

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 118/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +  V   G F+ AA  L L +S +SR+++ LE  +G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYYAEVVEHGGFSAAARVLGLPKSKLSRRLALLEERLGVRLIQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  +    Q  ++ +  +P G +RI   + L Q  +   L +F+   P + 
Sbjct: 63  RTYYEHCKAMLEEARAAQESIELTRAEPRGVVRITCPVALLQTTVSTMLADFMASCPLVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P+Q S L+ + L        A+P  +        
Sbjct: 123 IHLESTNRQVDLVAEAIDIAIRVRPPPLQDSDLVLKVLGNRCQCLVASPELIAQQGAVTV 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G    + +   +        I       L      ++      G G+ 
Sbjct: 183 PADLSGWPSLGLGQPQQEFIWRLDGPEGAHAAIYHQ--PRLVTADMTTLRSAAQCGVGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V D      LVR++         ++  +P        +++  +++ L+
Sbjct: 241 QLPVMMVADQLAQGELVRLLPAWSLRHEIIHAVFPSRRGLLPSVRSVLDYLALR 294


>gi|170744847|ref|YP_001773502.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168199121|gb|ACA21068.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 308

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 130/290 (44%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A +G F  AA +L LS S++ + ++ LE  + ++LF+R  R LTLT +G+
Sbjct: 4   LGALNAFVQTAEAGGFAPAAARLGLSASAVGKAVARLEDRLAVRLFHRSTRSLTLTPEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   ++ ++E  +IEL  +   PSG LR++    L   L+   +  F+  YP+I +
Sbjct: 64  MFLDRCRRIFSEIEAAEIELSRTRRAPSGTLRVSLP--LIGMLMMPAVMAFMRAYPEITL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ +D+  +  D  IR  +  + S L+ R+L        A+P YL     P + +
Sbjct: 122 DLDFTDRLVDVIEEGFDAVIRTGEA-RDSRLMMRRLGAFSHRIVASPDYLAARGTPRAPE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  +         ++ +  +    D  +  P  +    ++    +     G G+A 
Sbjct: 181 DLLAHACLHHRYPTTGKLQRWPLVRDGADLDLALPVTAV--ASTLEPQLCLAEEGFGLAC 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP + V+       LV ++ D +      +  +P +   + KL AF  F+
Sbjct: 239 LPLFAVQRFLRRGALVAVLRDHLREVGAFHILWPASRHPSPKLAAFVAFM 288


>gi|330876924|gb|EGH11073.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 302

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 128/299 (42%), Gaps = 10/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  +A   SFT  A    LS ++++R ++ LE+ +GI L  R  R + LTE
Sbjct: 1   MDRIQEMTLFAALAGQTSFTGVARHFGLSTATVTRAVASLESRLGILLVVRTTRNMRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L+  +         P+G L +      G   +   L  FL  YP 
Sbjct: 61  AGQRFAEDCRRLLTDLDEAENAAAGVHALPAGTLTVTAPQMFGALHVTPVLTRFLNEYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+ IL ++ + +  +  D A+R+   ++ SSL    + ++     A+P YL     P 
Sbjct: 121 VDIRAILVDRVVSMLDEGVDVAVRIGA-LRDSSLTAIPVGSVRRMVCASPAYLTQHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L  H  ++            +W   VD       + S L + S+ + +   +   G
Sbjct: 180 HPDDLQLHATVS----TSAPERPPHWAFRVDGQDYSVNVASRLSLTSFQASINAALQHWG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  +P Y ++++     LV ++ED       V+  Y E  + + K+++F +F     R+
Sbjct: 236 LTQVPHYQIREHLQNGRLVCVLEDFEISPEPVHVVYSEGRRGSSKVRSFVDFCVSALRE 294


>gi|300721592|ref|YP_003710867.1| putative LysR family transcriptional regulator [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628084|emb|CBJ88635.1| putative transcriptional regulator with periplasmic binding protein
           domain (LysR family) [Xenorhabdus nematophila ATCC
           19061]
          Length = 308

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 135/289 (46%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LRVF +VA+  SF  AAE++ +S + IS++I+ LE+ + + L +R  R +++TE G 
Sbjct: 7   LQDLRVFLLVAKRASFAAAAEEMGVSPAFISKRIAILESVLNVTLLHRTTRRVSITEDGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     + + +     EL E   +P G +RI ++   G+  +   L   +  YP ++I
Sbjct: 67  RIYEWAQRILNDVNQMLDELSELRQEPQGTIRIVSSFGFGRQFVAPALSALVQAYPQLEI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ ID+  +  D  IR+   I  ++LI RKL +      AAP YL     P S+ 
Sbjct: 127 RFDVEDRIIDLVTEGIDLDIRVGDDI-DNNLIARKLASNRRILCAAPSYLARHPMPKSLN 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  +   +           L +            +  N    I Q+C+ G GI L 
Sbjct: 186 ELPSHACLVIKERDHPFGIW--QLQSSAGYQSVKVTGPMSSNHGEIIHQWCLDGHGITLR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + +++   +  LV I+ +    S  ++  Y   L  + +++    F+
Sbjct: 244 SYWDIRENIKSGALVHILPEYYQ-SADIWAVYVTRLAMSARIRVTIEFL 291


>gi|251789721|ref|YP_003004442.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538342|gb|ACT06963.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 297

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 128/286 (44%), Gaps = 6/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G +L
Sbjct: 8   DLTAFVVVAEERSFTKAALRLGMAQSALSQIVRRVEARLGLRLLSRTTRSVAPTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H L+T    L E   +PSG LRI T     + +L   +K  L   PDI I++
Sbjct: 68  LAKLGPMLHDLDTVIGSLGELRDRPSGTLRITTVEHAAKTILMPAMKRLLADNPDIHIEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D+  +D+  +  D  IRL   I    +  R    I M   A+P YL     P +  EL
Sbjct: 128 NVDHALVDVVANQFDAGIRLGGDIDKDMIAVRIGPDIPMAIVASPAYLARHPAPTTPAEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
             H+ I F   +P       W L +  R I       L VN+   ++   + G G+A + 
Sbjct: 188 FDHSFINF--RLPTSGTLIGWPLMSDGREIRVRGQGQLVVNTIDLLVDAVLDGHGLACIH 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
              V+   DN +L++++  +       +  YP    ++     F  
Sbjct: 246 LDQVQRFIDNGSLIQVLSGLTRDIPGYHLYYPNRRHHSSAFSLFVE 291


>gi|327392752|dbj|BAK10174.1| putative HTH-type transcriptional regulator YcaN [Pantoea ananatis
           AJ13355]
          Length = 314

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 118/292 (40%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L +F  +A   SF  AA+  +++ S++S  +   E  +G++L  R  R ++LTE G
Sbjct: 7   TLQELEMFCAIAHHRSFRKAAQARNVTPSALSHAMRHFEQRLGVRLLNRTTRNVSLTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +       +L     EL +   +P GKL++           +  +  F+  YP+I 
Sbjct: 67  AHFLQRIQPALVELSQAVDELNDWRARPHGKLKLNMPRSAETLFFESLILPFIQRYPEIT 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  ++  +DI     D  IR    +    +       +     A+P  ++    P + 
Sbjct: 127 LEIDSNDALVDILEAGFDAGIRYGDVLAQDMIALPFGPAMRTLVVASPALIERHGAPQTP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL     I       +      W A   + +       L +++   I+Q  + G+GIA 
Sbjct: 187 DELLAFPCIERRFPSGRRYRWEFWHAGQRQEVAV--SGPLVLDNNERILQAALSGAGIAF 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L + +V  +     LV ++      +   +  YP     +  L+ F +++ L
Sbjct: 245 LQEAVVSAHLQRGALVELLSGFTQHADGFWLYYPGRRYVSAPLRHFIDWLRL 296


>gi|312173900|emb|CBX82154.1| HTH-type transcriptional regulator ptxR [Erwinia amylovora ATCC
           BAA-2158]
          Length = 301

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 7/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V  + S+T AA+ L L++SS+S++IS LE  +G KL  R  R + +TE G
Sbjct: 6   NLHGMFIFAKVVETLSYTEAAKALGLAKSSVSKEISALEVRLGAKLLQRTTRRIQVTEVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     + H++++    +++   +P G LR+   +  G   +   L  F+     + 
Sbjct: 66  MTYYHYCYRILHEVKSADRFIRQFHEEPGGSLRVVAPVTFGCQCIVPALNRFIASNIHVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +++  D  D AI + + +       R L+ I    YAAP YL N     S 
Sbjct: 126 VDLDLTDRPLNVEDDRIDIAIAITRDLPDHR-HYRPLMDIAWGLYAAPDYLLNRTPVTSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I F    P       +     +   E R S  + N+ ++++   V  +GIA 
Sbjct: 185 DDLQRHEFILFRG--PAHTISLPFRKEKLKKDIEVR-SRFRANNSIALLNSAVAETGIAY 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LP YI     ++  LVR++ +     +  Y         + +++ F  
Sbjct: 242 LPSYIAGEAVESGKLVRLLPEWEMDIYKSYVLIKSDSFVSPRVRLFIE 289


>gi|283835091|ref|ZP_06354832.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291069385|gb|EFE07494.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 302

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 125/301 (41%), Gaps = 11/301 (3%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    L  F ++   GSF+ AA+    + S+ISR  S LE  +G KL +R  R L L
Sbjct: 1   MNPNLLPDLATFVLIIDQGSFSAAAKASGATPSAISRSASRLEKALGSKLLHRTTRKLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +E G  ++    E+ H  +              G+L ++    +G+ ++   + EF   Y
Sbjct: 61  SETGKIVYAHAQEMLHAAQMAVDSGSSRQTIAQGQLTLSVPKAVGRFVIHPLMAEFFTRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + ++L L+++ +D+  D  D A+R+ +   S  L  + L+ +     A P YL+    
Sbjct: 121 PQVDVRLRLEDRYMDLIDDGVDLALRISQS-PSPGLYGKPLMPVSHVICATPEYLRKYGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   Q L +H+ I+ G+        F      +R            N     +       
Sbjct: 180 PEHPQALREHSCISLGETPADSRWKFR---RGERMEIIQTHGRYAANHTGVRLDAVKKDL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  LP +   +   N  +V+++ +       S  ++  +        +++A  +++  K
Sbjct: 237 GIGSLPLFTASEALANGEIVQVLPEWEFISDYSGELWLLWTRNQHMPARMRAMIDYLSEK 296

Query: 294 A 294
            
Sbjct: 297 V 297


>gi|104781984|ref|YP_608482.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110971|emb|CAK15689.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 301

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 127/290 (43%), Gaps = 10/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF     +  F+ AA +L ++ SS++R +  LE E+G  L  R  R ++LTE G+  
Sbjct: 6   AIKVFMATVEALGFSAAARKLGVATSSVTRLVDALENELGAALLNRSTRQVSLTEAGAGY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++   ++   L      + +   +P G LR+   ++ G+ ++  +L  FL  +P +++ +
Sbjct: 66  YQRARDILEALAEADARVADRGEEPVGVLRLCLPVEFGRRVIAPHLGAFLARHPGMELDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  D+     D  IRL +P  S  L+ R L        A+P YL         ++L
Sbjct: 126 DLSDRFDDLLDGRYDMTIRLGEPAPSDELVCRPLGRFERWLVASPAYLAQRPPLEHPRQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
                + F             L   ++ +       L+  +   + +  + GSG+ALL D
Sbjct: 186 ADCACLRFRYGQSARPWR---LRRGEQVLELDVAGPLRSANADLLREAAMAGSGVALLAD 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNF 289
           ++V+++     L R++ D           +   Y    + + ++ AF  F
Sbjct: 243 WLVREDVQAGRLQRLLSDWQASPGAASTSINALYLPNHRGSRRVMAFVGF 292


>gi|148261219|ref|YP_001235346.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146402900|gb|ABQ31427.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
          Length = 302

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 124/295 (42%), Gaps = 12/295 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L +F  +   GSFT AA    +S+ + +  I+ LE  +G +L  R  R +  T 
Sbjct: 1   MDRLAALELFVRIVDRGSFTAAAADCSISRPAATATINALEKRLGTRLLQRSTRHVQPTV 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +R    +   LE      + +S   +G LR+     L + +L   L  FL L+P 
Sbjct: 61  EGEAYYRRCIGILADLEDA---DRGASGAVAGLLRVDMVGTLARIVL-PALPTFLALHPA 116

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + +    + +D+  +  DC +R    +  S +I R L  +     A+P YL     P 
Sbjct: 117 VTVHIGEGERFVDLVREGVDCVVRAG-TLPDSDMIVRHLGVLEEIICASPAYLSEHGVPA 175

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +LD H ++ F  +  +  +       VD    E  + + + VN   +      LG G
Sbjct: 176 TPDQLDGHFMVGF--VSSRTGQPLPLEFMVDGVKVERTLPARVMVNGADTSAAAARLGMG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   P    KD+     LV I++D       +   YP   + + +++ F +++  
Sbjct: 234 LVQAPRLRFKDDLNTGALVEILQDFQPSPTPISVIYPNHRQLSPRVRVFVDWLVE 288


>gi|260599151|ref|YP_003211722.1| DNA-binding transcriptional activator GcvA [Cronobacter turicensis
           z3032]
 gi|260218328|emb|CBA33331.1| Glycine cleavage system transcriptional activator [Cronobacter
           turicensis z3032]
          Length = 305

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   E++ +L     +LQ  S    G L ++       + L   L  F   +P I +
Sbjct: 68  SYFQDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSSWPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDKPLKAPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L +H L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLARHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|227819820|ref|YP_002823791.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227338819|gb|ACP23038.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 297

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 121/278 (43%), Gaps = 11/278 (3%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GS + AA +L L+    +R+++ LE  +G++L +R  R ++LT +G         +    
Sbjct: 16  GSLSEAARRLGLTPMIATRRLASLERSLGVRLMHRTTRSMSLTPEGESFLPYAQALVETE 75

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           +     L+      +G LR++  +     ++   +   L   P++++ L + +   D+  
Sbjct: 76  QQALALLRGEDKGAAGLLRVSAPVAFSIKVIAPLVPPLLNTNPELRMSLDMTDSMPDLVS 135

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
              D AIR+ + ++ SSLI +KL        A+P YL+    P S  EL  H+ +    +
Sbjct: 136 SGTDLAIRIAR-LKDSSLIAKKLADNPRSLVASPAYLEKHGRPRSAGELAHHDCLPLYGV 194

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PN 254
                      A++         S     S       C+ G+GIALL D+ V D+     
Sbjct: 195 THWTFLRAGLEASLRLQ------SRFSSTSIEGCHAACLAGAGIALLSDWNVADDLACGR 248

Query: 255 LVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L R+ ++D    +  ++  YP +     K++ F + + 
Sbjct: 249 LARVALDDAEPETLAIWAVYPTSRLVPPKVRIFIDALV 286


>gi|193782762|ref|NP_436513.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|307300846|ref|ZP_07580621.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|193073218|gb|AAK65925.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|306904380|gb|EFN34965.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 295

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 122/301 (40%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA   +F  AA++L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDMNLLPLFLAVAEEDNFRAAADRLGVTRSAVSQGIRRLEDAFGTTLVTRTTRSVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    S+    + T    +     +P G LRIA T    Q L    +  F   +P
Sbjct: 61  EAGERLREALSQPLSDIGTALDRV-AGEDEPRGLLRIAVTSIAEQFLSGPLIASFAQAHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I + + +++ DI     D  +RL + I+   +           A AAP YL     P
Sbjct: 120 KVAIDVTVTDEEFDIVAAGFDAGVRLGEVIEQDMIAVPLTGDQRELAVAAPTYLAVRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL  H  I +          +        P        +  N    +++  + G+G
Sbjct: 180 AHPRELVHHRCIGWRRAPNVAPYRWE-FEENGVPFDVAVEPQITTNDLRFMLRSALCGAG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I    +   +   +   LV +++D + P    +  +P+    T K++A    +    R W
Sbjct: 239 ITFATEETFRPFVETGELVPLLQDFLPPFPGFFLYFPQRRNMTPKMRALIEHV----RRW 294

Query: 298 K 298
           +
Sbjct: 295 R 295


>gi|288963007|ref|YP_003453301.1| HTH-type transcriptional regulator [Azospirillum sp. B510]
 gi|288915273|dbj|BAI76757.1| HTH-type transcriptional regulator [Azospirillum sp. B510]
          Length = 300

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 119/291 (40%), Gaps = 5/291 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L     VAR   F  AA +L +S+S++S  I+ LET +G++LF+R  R + LT+ G 
Sbjct: 6   LAELEAVQAVARHRGFRAAAAELGMSRSALSHAIAALETRLGVRLFHRTTRSVALTQAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +    T+     +      L E    P+G LRI  +    + +++  + E+L  YP + +
Sbjct: 66  QFVADTAPALRDIRAAIDRLSEHRTAPAGTLRINGSSGAARMIMKPVILEYLRRYPGMTV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++ + K +DI ++  D  IRL + +    +       +       P Y      P +  
Sbjct: 126 DIVTEGKLVDIVLEGFDAGIRLAEQVPQDMIAVPLGPDLRFAVVGTPDYFAGRSMPRTPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I     +P               +       L ++    ++     G G+  L
Sbjct: 186 DLAGHRCI--RSRLPSGALYRWEFERRGETVAIDGTGPLILDDPNLMLDAVRGGLGLGYL 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V ++     L+R++ED   P   +   YP        L+A  + +  
Sbjct: 244 AEWHVAEDIAAGRLLRVLEDWTPPFPGLCLYYPGRRHLPLGLRALVDLVRE 294


>gi|307250008|ref|ZP_07531977.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857970|gb|EFM90057.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 295

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  
Sbjct: 1   MDLNNLRLFVAVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTAL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+         L     +      + SG LRI+T            + EF   YP +
Sbjct: 61  GLQLYEKVYLSLDNLTQVTQDFIGEQQELSGYLRISTVSACEPIW--AAIAEFQAEYPQV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     ++ +D+  D  D A R+   + + ++I RK++ ++    A P +L     P +
Sbjct: 119 KVHCQATDRVLDLVEDGIDIAFRMGD-LHTENVIARKMMDLNAVLVAHPDFLARHGTPKT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L       +     +  +    L   ++ +    I     N   +I         I 
Sbjct: 178 PQDLTALPFACWA----RAGQKSATLQLGEQAVKIEPI--FTSNDVYAIAHQAKNAHAIC 231

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LPDY+ ++      LV +M D  T ++ ++  YP     +  +K F  F
Sbjct: 232 QLPDYMAQELTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGF 281


>gi|291085435|ref|ZP_06353092.2| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291070993|gb|EFE09102.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 291

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 125/289 (43%), Gaps = 9/289 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS + AA  L LS+  +SR +  +E   G +L +R +R LT+T  G +    
Sbjct: 9   VFNHICDLGSLSAAARALGLSRPMVSRYLDEMEKWAGARLIHRSSRRLTITPAGEEAL-- 66

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
                    +  I    ++  P+G LR+A       ++L   L +FL  YP ++I++ ++
Sbjct: 67  VKTRSLARISLDIAAASAAQIPAGTLRVACAHFTAMHILAPVLPDFLARYPQLRIEVEIN 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ + +  +  D AIR+    +  + I R+L        A+  YL     P +I +L +H
Sbjct: 127 NQPVSLVGERIDVAIRITDNPEPGT-IARRLGDCESVLCASVDYLHQHGTPATIDDLTQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + +     K    +++L   ++ I       L       + +  + G GIAL+P+   
Sbjct: 186 NCLYYSGFAGKS---WHFLNAQEQAISVAIKGNLSAGISSLLCESALAGMGIALVPEPEA 242

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++      LVR++ ++      +Y  Y         L+   + I    R
Sbjct: 243 REGLAQGKLVRLLPELQPKCLPIYGLYLSREHQPAGLRLLLDAISETMR 291


>gi|145639400|ref|ZP_01795005.1| LysR protein [Haemophilus influenzae PittII]
 gi|145271447|gb|EDK11359.1| LysR protein [Haemophilus influenzae PittII]
 gi|309751755|gb|ADO81739.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
          Length = 296

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 4/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L  F  +A++ SF  A + L +S S++S  +  LET + ++L  R  R ++LTE G
Sbjct: 3   NFNELNYFLTLAQTQSFVKAGQLLGISSSALSHSMKNLETRLNLRLLNRTTRNVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +Y  +      L +    PSG +RI       + +L   LK  L  YP I+
Sbjct: 63  QQLFDQLFPLYQAINQEVDALNDFLNTPSGLIRINAPSMAAEAVLYPKLKPILNQYPKIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++D++  DI  +  D  +RL   +    +       + M   A+  YL     P +I
Sbjct: 123 LEIVVDDRWADIVKEGFDMGVRLGNKVAKEMIAVPISAPLKMALVASHDYLAQYGSPKNI 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H LI          E           I     S   +N++L  +Q    G GI  
Sbjct: 183 DDLQQHRLIGIKLSAEHGTEMQWEFKYKKELITFTPKSQFSINNHL-RLQAVSDGLGITW 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP  I  D   +  LV ++ +       +Y  YP    ++   K   + + LKA
Sbjct: 242 LPHIIAADALHSGQLVELLPEYAMTYEPLYLYYPSRCGHSNVFKLIVDALKLKA 295


>gi|332140669|ref|YP_004426407.1| putative transcriptional regulator, LysR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550691|gb|AEA97409.1| putative transcriptional regulator, LysR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 299

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 137/300 (45%), Gaps = 22/300 (7%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  V  +GSF+ AA  L+   + +SR ++ LE  + + L  R  R L LTE+G  
Sbjct: 9   EDLEAFLTVVDTGSFSSAANLLNQQVAKVSRAVTRLEDTLDVTLLNRTTRRLELTEEGEL 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   +  + LE  +  L+     PSGKLR+        + L   + +F   +PDI + 
Sbjct: 69  FLQYARDGLNVLEKGEEALRLLKRTPSGKLRVDAASPFVLHQLAPLVGDFREAFPDITLD 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +  ID+     D AIR+   +  S+L  R+L    +H  A+P YL+    PLS  E
Sbjct: 129 ITSHDSIIDLLEHKTDIAIRIGD-LSDSNLHARRLGKSKLHIVASPQYLEKY--PLSENE 185

Query: 186 -----LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
                L+KH LI F D              +           L+ +S  +I Q C+ G G
Sbjct: 186 GGISTLNKHKLIGFSDSPSLNKWPLKQDVNLQ--------YSLRASSGETIRQLCLAGQG 237

Query: 241 IALLPDYIVKDN---PNLVRIM-EDVITPSF--TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IALL  ++V  +     LV +  +D+++P+   +V   Y +    + ++ AF +FI  + 
Sbjct: 238 IALLSHFMVHRDLSAGALVDVFSDDIVSPNRRESVQAVYYKNSAVSSRISAFLDFIQPRL 297


>gi|163757519|ref|ZP_02164608.1| transcriptional regulator [Hoeflea phototrophica DFL-43]
 gi|162285021|gb|EDQ35303.1| transcriptional regulator [Hoeflea phototrophica DFL-43]
          Length = 293

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ LR F  VA +GS T AA +L +SQ SI R I+ LE  + ++LF R  RG  L E+
Sbjct: 1   MDWNLLRSFLAVAETGSLTAAAVRLGMSQPSIGRHIAELERLLDMQLFRRGPRGQELNER 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +    +         S   +G +R+  +  +G  +L   + E     P I
Sbjct: 61  GLDLLNEVRRMGDAADALSRIALGHSQSLTGTVRVTASEVIGALVLPRLVAELRQQEPLI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+++  N   ++    AD AIR+ +P Q   L+ R +  I +   A+  Y     +P  
Sbjct: 121 EIEIVASNSLGNLLKRDADIAIRMTRP-QQLDLVIRHIGDIPLVPCASSDYFARAGKPQR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H LI +                ++R   + R      +++L + +    G+GI+
Sbjct: 180 LEDLAAHELIGYDRSDGIIAGLARAGIKINRSSFKVR-----SDNHLVLWEALRAGAGIS 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                +V  +P+L   +ED+  P    Y      L+++ +++   +++F   R++
Sbjct: 235 FAQAPLVAGDPDLETCLEDMELPRLETYLTMHSDLRHSPRIRYVADYLFKAMRNY 289


>gi|116694059|ref|YP_728270.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528558|emb|CAJ94905.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 309

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 129/303 (42%), Gaps = 12/303 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  +  +G+ + AA +L ++++++S ++  LE E+G++L  R  R +  T  
Sbjct: 1   MDLNALRLFVDIVDAGNLSAAARKLKMTRANVSYRLKALEEELGVQLLRRTTRHVEPTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+     +  ++      +        G +R++    LG +LL   L  F   YPDI
Sbjct: 61  GAGLYEHGRNILGEVAAANALISNMGKSLKGHVRLSVPTGLGHSLLSPLLVLFKQRYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ DN+  ++  +  + A+R+      S ++  ++  +     A+P YL     P +
Sbjct: 121 TLDVVFDNRVHNLVSEDVEVALRIISTPPDS-VVATEIGEVDWIVCASPAYLAGHLAPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-----ISCLQVNSYLSIMQYCVL 237
           + EL  H  +       + ++      +     GE R        L   ++  + +  + 
Sbjct: 180 LSELQGHAFVC-ASPEGQKLKATGIRHSGGGDGGEIREQVVLEPTLTSENFAFLKEAVLA 238

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFL 292
           G GI + P Y +    D+  LV ++ D     F   +Y         T   +   NF+  
Sbjct: 239 GLGIGIFPIYAIGAELDSGALVPLLCDYRISVFGSKLYMLTMPNRYQTLATRYLLNFLKT 298

Query: 293 KAR 295
           + +
Sbjct: 299 ELQ 301


>gi|171057516|ref|YP_001789865.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774961|gb|ACB33100.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 301

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 129/287 (44%), Gaps = 6/287 (2%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
           RS +FT AAE+L L++S++ + ++ LE  +G KLF+R  R + LT  G       +    
Sbjct: 17  RSRTFTDAAERLGLTKSAVGKTVARLEERLGFKLFHRTTRLMRLTADGEAYLSACTAAIE 76

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
           ++   Q  L   +   SG+L I   +  G+ +L   L E    +PD+ + L   +   D+
Sbjct: 77  EVAAAQAALSSRNQILSGRLHIDMPVAFGRRVLLPVLIEITRPHPDLSLTLTFTDATSDL 136

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG 195
             +  D AIR      SS L+ R+LVT      A+P YL+   EP+++ ++  H  I   
Sbjct: 137 LQEDVDLAIRFGALTDSSDLVARRLVTQERVICASPEYLRMHGEPMTLADVRAHRCIVGS 196

Query: 196 DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---N 252
              P  +   +    V+R       +  +++   ++M   + G GI  LP  +V++   +
Sbjct: 197 LKGPPLVWFVSDGGAVERFT---PPATHRLSDGEAMMDAAIGGLGIVQLPISLVREPLAD 253

Query: 253 PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +L  I+         V+  +P     + +++   + +   A   + 
Sbjct: 254 GSLRSILPAHSAVGVEVHAVWPRQRHLSPRVRYVVDQLVAYAAKGRL 300


>gi|325168745|ref|YP_004280535.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064468|gb|ADY68157.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 309

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 136/303 (44%), Gaps = 10/303 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D   L  F +VARS  F  AA +  +S S++S  +  LE ++G++LF R  R + LT
Sbjct: 1   MS-DLTDLNAFLLVARSKGFRQAARESGVSSSALSDAVKRLEEDLGVRLFNRTTRSVLLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L   T   + ++ +   E++ S  + SG LR+   +   + +L   +  FL  YP
Sbjct: 60  DAGRLLLERTGPAFAEVASALDEVKSSRGRTSGDLRLNVPMSAARLVLPPIVPPFLKAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           +I+++++ D   +DI     D  IR  + ++   ++   +          A+P YL    
Sbjct: 120 EIRLEIVTDENFVDIIKSGCDAGIRYDERLEQD-MVALPIGPRQQRYALAASPGYLARRG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSI-MQYCV 236
           +P   Q+L  H+ I  G    + +  + +    +     P+ S  +Q      + +   +
Sbjct: 179 KPQHPQDLLSHDCI-LGRFSGRALPSWEFERDGEEIAINPKGSLVVQFGGGTDLGIDAAI 237

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GSGI  + +  ++   D  +LV +ME+        +  Y         L+AF +F+   
Sbjct: 238 AGSGIIYIFEDWLRPHFDRGDLVPVMEEWWLRFSGPFLYYSGRRLVPAPLRAFIDFVRQS 297

Query: 294 ARD 296
            +D
Sbjct: 298 HKD 300


>gi|296136600|ref|YP_003643842.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
 gi|295796722|gb|ADG31512.1| transcriptional regulator, LysR family [Thiomonas intermedia K12]
          Length = 302

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 123/294 (41%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  GSF+ AA QL  + S++SRQ+  LE  +GI+L  R  R L LT  G   
Sbjct: 12  EMVTFLRVAEFGSFSAAARQLGTTPSAVSRQVFRLEKHLGIQLILRTTRQLRLTAAGDAA 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E+    +      Q+ +  P G + I+      +++L   L +FL  +P +Q+QL
Sbjct: 72  RVRCGELVAAAQAVMQVPQQIAGTPKGSICISAPKAFARHVLHSLLLQFLAQWPQVQLQL 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I  + ++D   +  D  IR+ +         R+L+ +     AAP YL          +L
Sbjct: 132 IATDHEVDPFREGVDLMIRVTRH-PPEGFAARELMQVEQVLCAAPAYLAAHPAITHPSDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +  G+        F      D            VN     ++  + G G+  LPD
Sbjct: 191 AAHSCLPLGEDAHDRCWRFR---QGDTETEVVVQGRYAVNHSALRLEAMLAGLGLCTLPD 247

Query: 247 YIVK---DNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           Y+ +   +N + V+++ D         + Y  YP +   +  L+A  + +    
Sbjct: 248 YVARHALENRSAVQVLPDWNFLGNYGGSAYALYPPSRFVSPTLRALIDHLAAAL 301


>gi|260459213|ref|ZP_05807468.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259034767|gb|EEW36023.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 308

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 121/292 (41%), Gaps = 5/292 (1%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    L V   VAR G F  AA +L +S S++S  +  +E  +G  LF R  R ++L
Sbjct: 1   MDRDLLTHLPVIVAVARRGGFALAAAELGMSPSAVSHAVRLVEERIGQPLFARTTRSVSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G  L    +     +      ++    +PSG LRI  +       +   +      Y
Sbjct: 61  TEAGKALVETAAPALQDIAERMDRIRSVKGRPSGLLRINASNIAIPLAVTPVVAAMAERY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ +++  D   +DI  +  D  IRL + I    +  R      +   A+P Y+     
Sbjct: 121 PEVTVEIFADQGLVDIVGEGFDAGIRLGEMIAQDMVAVRLTPPFSVVIVASPAYIGRHGR 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+ +L  HN I +  +    +  ++ L    + I       + V   L+ +   + G 
Sbjct: 181 PGSVADLANHNCIGYRLVRSGALYRWD-LVEDGKDIAMETRGSVVVTDSLAAIDLALAGV 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A + + + + +     LV+++         ++  +P       KL+AF +
Sbjct: 240 GLAYMFEPLARADLAAGRLVQVLPQSAIEEPGLFLYFPRRAAMAPKLRAFID 291


>gi|156932715|ref|YP_001436631.1| DNA-binding transcriptional activator GcvA [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156530969|gb|ABU75795.1| hypothetical protein ESA_00503 [Cronobacter sakazakii ATCC BAA-894]
          Length = 305

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   E++ +L     +LQ  S    G L ++       + L   L  F   +P I +
Sbjct: 68  SYFQDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSSWPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDKPLKAPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L +H L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLARHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|254784279|ref|YP_003071707.1| LysR family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237687470|gb|ACR14734.1| transcriptional regulator, LysR family [Teredinibacter turnerae
           T7901]
          Length = 298

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 120/296 (40%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+      R+F  +AR GSF+ A  +L++ Q ++SR +  LE+E+G+ L  R  R +TLT
Sbjct: 1   MNDRLTAYRIFTRIARLGSFSAAGRELNMPQPTVSRIVKALESELGVALLLRTTRAVTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G         +   L+  +  ++ +  +  G LR+  +  +    +   L  F+  + 
Sbjct: 61  DAGRDFLLRIEAILDSLDDAEHAVRGT-GELRGVLRVGLSSTIAVREIVPILPGFMAEHA 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++LI D++   + ++  D AIR  K +  S+ + + L  +     A+P YL     P
Sbjct: 120 KLKVELITDDQRQALVIEGIDVAIRFGK-LDDSTAVAKHLADLPRGIVASPEYLAQYGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  ++  H +I      P                G      L V +    +     G G
Sbjct: 179 ESPSDIANHRIIAMQSSSPTVWN----FNKNGTTTGLRLERHLLVTTNEVALASACCGLG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA +     +       LV ++         ++  +P         + F N++  +
Sbjct: 235 IACMTLAAARREISAGKLVVVLPGWTMGHVPLHAVFPAGRAAKPAARVFVNYLADE 290


>gi|207738586|ref|YP_002256979.1| hypothetical protein RSIPO_03278 [Ralstonia solanacearum IPO1609]
 gi|206591954|emb|CAQ58860.1| hypothetical protein RSIPO_03278 [Ralstonia solanacearum IPO1609]
          Length = 298

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  V   G+F  AA +L L+ SSIS+ +  LE E+G+ L +R  R L+LTE
Sbjct: 1   MDVLKRMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   + V H     Q ++     +P+G+LRI    +L    L   L++F+  +P 
Sbjct: 61  AGRVYYEECANVVHAAARGQQKVAALRDEPAGELRITAPSELAHQHLVPALRDFIAAHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++  L ++ ID+     D A+R+ + ++ SSL+ R++        AAP YL+    P 
Sbjct: 121 LAVRFELGDEKIDLVEHRVDLAVRIGE-LRDSSLVARQIAWFDELICAAPAYLERTGPPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q L   + + F  L        +   T    +       L  N   ++    + G G+
Sbjct: 180 TPQALADLDWLIFTPLGEPAF--VHLRNTQGHEVRLRVHGRLATNQAQTLKALALDGHGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L    +        LV ++ D     F VY   P       K+      +
Sbjct: 238 ARLLKADIGTELAQGRLVPLLPDWRLAGFGVYAITPRRDAQPLKVTRCIEHL 289


>gi|238796451|ref|ZP_04639959.1| Transcriptional regulator [Yersinia mollaretii ATCC 43969]
 gi|238719656|gb|EEQ11464.1| Transcriptional regulator [Yersinia mollaretii ATCC 43969]
          Length = 320

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 134/312 (42%), Gaps = 27/312 (8%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF  V    SFT  A+ L+L +S+++  I  LE  + ++L  R  R ++ T 
Sbjct: 1   MDRIDAMRVFIRVVEQRSFTQTAQDLNLPRSTVTDAIKQLEKRLNVRLLQRTTRHVSPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +   +E  ++    +  KP G LRI     L ++ +   L +F+  YPD
Sbjct: 61  DGEAYYQRCLRIIADIEDAEMAF--AHAKPRGLLRIDVQGTLARHFVLPQLPDFIAQYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D+  +  D  +R+   +Q S ++ R++  +     AAP YL+    P 
Sbjct: 119 IELFISEGDRLVDLIREGIDGVLRVGN-LQDSDMVARRVALLPQVTCAAPQYLEQHGTPE 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD----------RPIGEPRIS---------- 221
              +L  H ++ F       +    + +               +  P +S          
Sbjct: 178 LPTQLSGHQMVGFRSSATGGLLPLEFSSHSSLGAYPTVRSAHSLSAPHLSSETLQVKLPA 237

Query: 222 CLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALK 278
            L V    S +    LG G+  +P Y +  +     L+ I+ +   P   V F YP + +
Sbjct: 238 VLSVTGAESFVAAARLGLGMIQVPRYHIAPDLAAGTLIEILPEFPPPPMPVSFLYPHSRQ 297

Query: 279 NTGKLKAFRNFI 290
            + +++ F +++
Sbjct: 298 LSPRVRIFSDWL 309


>gi|86144673|ref|ZP_01063005.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           sp. MED222]
 gi|85837572|gb|EAQ55684.1| Hypothetical transcriptional regulator, LysR family protein [Vibrio
           sp. MED222]
          Length = 312

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 125/310 (40%), Gaps = 22/310 (7%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V   GSF  AA   +LS + IS+ +  LE+ +  +L +R  R  +LT+
Sbjct: 1   MDKLTSMKVFVYVVEQGSFRSAANHFNLSATMISKHVHHLESSLNSQLIHRTTRKQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   +   +  +Q    +P G ++I   +  G  +L   + +FL  +P 
Sbjct: 61  SGQLYYRECKRILEDISNAENLIQTLENQPQGTVKINCPVTYGNKVLAPIVAKFLAHHPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L+N  +D      D  +R+   +  SSL+ R L    M   AAP YL    E  
Sbjct: 121 INVELVLNNDLVDPYSSDIDLIVRIGD-LSDSSLVARYLGDYEMCYCAAPEYLNQHAEIR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFN----------------WLATVDRPIGEPRISCLQV 225
            +++L +H  + F     + +   +                         G      L  
Sbjct: 180 VLEDLAQHPSLGFSYSSRRDIIGRDTHIRHIQNSEPQSRDPQSHQATHTAGNKGQVRLMS 239

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           N+   +    + G G+ L P  +V +      L+ I+  +      ++  Y +  + + K
Sbjct: 240 NNGDVLRYAALQGVGVLLQPTILVAEEIERGMLLEILPGMAPLPKPIHLLY-KTKQLSLK 298

Query: 283 LKAFRNFIFL 292
            + F  F+  
Sbjct: 299 NRTFVEFLLA 308


>gi|254248947|ref|ZP_04942267.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875448|gb|EAY65438.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 350

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 133/294 (45%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R+F  +    SFT AA+ L +S+++ +R +  LE  +G+ L  R  R L  T +G 
Sbjct: 21  IRAMRIFTRIVEMNSFTRAAQALGISRATATRTVQELEAALGMPLLVRTTRALRPTPEGD 80

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   ++  +  ++ +++ PSG LR+     +   ++   L EF   +PD+++
Sbjct: 81  AYYRRCVSITADVDELEASIRGAALHPSGPLRVELPASVASTIVLPALGEFHARHPDLEL 140

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +  +  D   D  DC+IRL   +  SSL+ R+L ++     A+P YL     P +  
Sbjct: 141 TLAVAGRAGDRIGDAIDCSIRLGA-LPDSSLVARRLGSLERVTCASPAYLDRFGVPRTPD 199

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  +    +  +   +  ++  VD  + + R+   + V+   + +   V G G+ +
Sbjct: 200 DLGAHRAVGGSHVFGQRSAELEFV--VDDAVRKVRLDGIVSVDDEQAYLACGVHGLGL-I 256

Query: 244 LPDYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P  +      D   L  ++      +  V   Y +    +  ++AF ++I  +
Sbjct: 257 QPTRVAAQPLIDAGRLREVLAGWQPDALAVSAVYVKRPHVSPGVRAFVDWIAER 310


>gi|259416622|ref|ZP_05740542.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259348061|gb|EEW59838.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 310

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 131/297 (44%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA    F   A ++ LS  S +R I+GLE ++G +LF R  R L LT+
Sbjct: 1   MDRIQSMQVFVAVAEEEGFAAGARRVGLSAPSATRAINGLEAQLGARLFTRTTRRLHLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L+      + ++  P G LR+    + G+  +   L ++L  YP+
Sbjct: 61  VGRRYLDDVRHILTSLQAADDAARGAASAPVGLLRLTCPNEFGRIYILPILLDYLDQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +L+L ++ ++I  +  D A+R+   + SS+L   K+  +     AAP YL+    P 
Sbjct: 121 MRAELVLLDRVVNIVEEGFDVALRIGH-LPSSTLSAVKVGAVRRVVCAAPSYLERYGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H ++    +         W    D+         L V++  + +     G GI
Sbjct: 180 IPADLTAHRIVAINAVSSAT----EWRFGTDQQDTVRIKPQLCVSTVAAGLDAARAGWGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y    +    +L  ++E+    S  ++  + E  +   K+++F +F   + R
Sbjct: 236 CRMLSYQAGRDVAAGHLACLLEEFEPDSMPIHLVHAEGRRAPAKVRSFIDFARDRLR 292


>gi|254181987|ref|ZP_04888584.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184212525|gb|EDU09568.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 321

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G 
Sbjct: 9   LNALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGG 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L     E++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 69  RYAQQVRAALALLADATREVRASERDK--RLVVSTLPSFAARWITPRIGPFIERHPEIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 127 ELRASDSLVDFARDDVDVAIRFGHGV-YPGLHVEPLLDETFFPVCAPT-LNGGMLPETPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 185 DLVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         +VR+ +      +  +F  P +L  T +++A R+++  +   ++
Sbjct: 240 RRSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRSWLLDEIARFR 296


>gi|239813476|ref|YP_002942386.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800053|gb|ACS17120.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 314

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 124/307 (40%), Gaps = 20/307 (6%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +L  F  VA  G  T AA+   ++ + + R++  LE  +G+KL  R  R +TLT 
Sbjct: 1   MDRLKQLESFVSVATRGGLTAAAKAEGVAPAIMGRRLDALEARLGVKLLVRTTRRITLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS        +  +    +  +    VK SG LR+      G+  +   +  F  L+P+
Sbjct: 61  EGSAFLEDCQRLLTEFANAEASVSAGGVKASGHLRVTAPAGFGRRHVAPLVPRFHALHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++ +D+  +  DCA+R+   +  SSL+  +L        A P +++    P 
Sbjct: 121 VTISLNLSDRVVDVRGESFDCAVRVGD-MPDSSLVSVRLADNRRRCVATPEFVRRHGMPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI------------SCLQVNSYL 229
              EL +   +T         +   W   + R                     L  +   
Sbjct: 180 HPNELSRFACLTLSS---DASQTRGWAFRIPRAPAAAGEEAGEELIYLRPEGPLDCSDGQ 236

Query: 230 SIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +  +C+ G GIA    + V+   D   LV ++++   P   +Y  +        +++ +
Sbjct: 237 VLHDWCLAGHGIAWRSTWEVEAEIDAGLLVPLLDEFAAPPNGIYAVFAGTKHLPLRVRLW 296

Query: 287 RNFIFLK 293
            +F+  +
Sbjct: 297 LDFLKEQ 303


>gi|188591934|ref|YP_001796532.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|170938308|emb|CAP63293.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 305

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 127/298 (42%), Gaps = 6/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  +  +G+ + AA +L ++++++S ++  LE E+G++L  R  R +  T  
Sbjct: 1   MDLNALRLFVDIVDAGNLSAAARKLKMTRANVSYRLKALEEELGVQLLRRTTRHVEPTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+     +  ++      +        G +R++    LG +LL   L  F   YPDI
Sbjct: 61  GAGLYEHGRNILGEVAAANALISNMGKSLQGHVRLSVPTGLGHSLLSPLLVRFKQRYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ DN+  ++  +  + A+R+      S ++  ++  +     A+P YL     P +
Sbjct: 121 TLDVVFDNRVHNLVSEDVEVALRIISTPPDS-VVATEIGVVDWIVCASPAYLAGHPAPHA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L  H ++    +  K     +   + D          L   ++  + +  + G G+ 
Sbjct: 180 LAGLRSHAIVCASPVGQKLKASGSREGSDDVREQVVLEPTLSSENFAFLKEAVLAGLGVG 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + P Y +    D+  LV ++ D     F   +Y         T   +   NF+  + +
Sbjct: 240 IFPLYAIGAELDHGALVPLLSDYRISVFGSKLYMLTLPNRYQTLATRYLLNFLKTELQ 297


>gi|258621628|ref|ZP_05716660.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258586100|gb|EEW10817.1| transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 323

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 22  LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 81

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L     +L E S    G L I+         L   L +F    PDI +
Sbjct: 82  SYFLDIKDIFSSLAEATDKLLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDV 139

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +   +++
Sbjct: 140 RIKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPALLLGNKPMETLR 198

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+   A  +             +    ++Q    G G+AL 
Sbjct: 199 DLSFHTLLH-----DTSRKDWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALG 253

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 254 NNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 307


>gi|134279619|ref|ZP_01766331.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|237810645|ref|YP_002895096.1| glycine cleavage system transcriptional activator [Burkholderia
           pseudomallei MSHR346]
 gi|134248819|gb|EBA48901.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|237505935|gb|ACQ98253.1| glycine cleavage system transcriptional activator [Burkholderia
           pseudomallei MSHR346]
          Length = 321

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G 
Sbjct: 9   LNALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGG 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L     E++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 69  RYAQQVRAALALLADATREVRASERDK--RLVVSTLPSFAARWITPRIGPFIERHPEIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 127 ELRASDSLVDFARDDVDVAIRFGHGV-YPGLHVEPLLDETFFPVCAPT-LNGGMLPETPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 185 DLVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         +VR+ +      +  +F  P +L  T +++A R+++  +   ++
Sbjct: 240 RRSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRSWLLDEIARFR 296


>gi|33596799|ref|NP_884442.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33600569|ref|NP_888129.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33568168|emb|CAE32081.1| Putative LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
 gi|33573500|emb|CAE37487.1| Putative LysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 314

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 130/291 (44%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LR+F      G+F+  A ++  + + +S++I+ LE ++G +L  R+ R L +TE G
Sbjct: 21  DLTTLRIFVRTVEIGNFSEVARRIGANPAMVSKRIANLEHKIGQRLLNRNTRRLMVTEAG 80

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+        +L+    E+     K SG LR+     LG+ ++   L +FL   P + 
Sbjct: 81  QRLYDHCMRALIELDQAAEEMSNMQDKASGLLRMTAPAMLGEAVIAPQLPQFLQQNPLLS 140

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +    + +D+     D A+R+   +    L+  KL         AP Y++    P   
Sbjct: 141 LDINFSLEKVDLFKARIDVAVRIADSV-DPGLVAIKLAPYRRVFCVAPQYIEAKGTPELP 199

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  HN +    +    + +  W   +D  IG  P    L  ++  +    C+ G G+ 
Sbjct: 200 ADLMDHNCL----ITRGSVLNTRWPVRLDGEIGNVPVKGNLVTDNGHAARLACLAGLGVM 255

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + P +++ ++     LV ++ D +  + +VY    +    + KL+   +F+
Sbjct: 256 MAPRWLLDEDIRAGRLVEVLADYVPDNRSVYALLLQRTGFSAKLQIAIDFL 306


>gi|330981380|gb|EGH79483.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 301

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 125/302 (41%), Gaps = 9/302 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  +A   SF   A    LS ++++R ++ LE+ +GI L  R  R + LTE
Sbjct: 1   MDRIQEMTLFAALAEQTSFAGVARHFGLSTATVTRAVASLESRLGILLVVRTTRNMRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L+  +         P G L +      G   +   +  FL  +P 
Sbjct: 61  AGQRFAADCRRLLADLDEAESAAGGLHALPGGLLTVTAPQMFGALHVVPVMTSFLERFPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+ IL ++ + +  +  D A+R+   +  SSL      ++     A+P YL+    P 
Sbjct: 121 VDIRAILVDRVVSMLDEGVDVAVRIG-TLPDSSLTAIPTGSVRRMVCASPAYLEKHGAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H+ +      P            D+       S L + SY + +   + G G+
Sbjct: 180 HPDDLRQHSTV---STTPAERSPHWLFRIDDKNYSVDVASRLSLTSYQAAISAALQGWGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR-DW 297
             +P Y ++++     L  ++E        V+  Y E  + + K++AF +F     R D 
Sbjct: 237 TQVPYYQIREHLQEGRLKCVLETFEIIPEPVHVVYLEGRRRSSKVRAFVDFCVSALRHDL 296

Query: 298 KF 299
           +F
Sbjct: 297 QF 298


>gi|293395183|ref|ZP_06639469.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422360|gb|EFE95603.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 291

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 129/285 (45%), Gaps = 7/285 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  V R G+   AA +LH+ Q+++ R+I+  E  +G KLF R  +  +L+  
Sbjct: 2   MNWDDARFFLAVTRCGTLRKAAHELHVDQATVGRRIAAFEEALGSKLFIRTPKSFSLSPL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      + + ++    +         G +RIATT  + +  +   L+     +P I
Sbjct: 62  GEEMLADVMNMENAVQAIGRKATSGDDSLCGNVRIATTDTMAEAFVIPALRYLRERHPQI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+      DIS   AD AIR  +P  S  LI +++ TI M  YA   YL     PL 
Sbjct: 122 TVTLLTAVNISDISYRGADLAIRGARP-DSDELIIKRMATIEMGLYATQDYLDKHGVPLK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  H+L+ F    P+ +   +W       +  P +  LQ NS L +      G GI 
Sbjct: 181 GDHLRGHDLLMF----PRELVPRHWNDFCGETLINPNV-VLQCNSQLLLRSATRNGLGIG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           LL  ++  ++P+LVRI  D       ++      L+   +++A  
Sbjct: 236 LLSSFLADEDPDLVRIFPDSKDW-VDIWLVLHPDLQRAARVRAVV 279


>gi|260770161|ref|ZP_05879094.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|260615499|gb|EEX40685.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|315182676|gb|ADT89589.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 297

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 133/294 (45%), Gaps = 8/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S+  D LR F  VAR GSF  AA+ L +  S++SR+I  LE ++ ++L  R A  + LT 
Sbjct: 4   SYSLDDLRCFCAVARCGSFKDAAQSLGMPLSTLSRRIRQLEADLQLRLLNRDAHRVVLTS 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  + ++ ++ +L+    +L     +P GK+RI+  I+ G   L+    +FLL YPD
Sbjct: 64  TGEQYFQRSAALFDELDDIDEDLHRDKHQPQGKIRISAPINAGSQFLRTIFYDFLLQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L   N  IDI  +  D   R+  P+   + I R L  IH    A P Y  +     
Sbjct: 124 IQLDLSFSNSLIDIEAEGMDVVFRVGSPVVD-NWIARPLKHIHFILCAHPDY--DISGIT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H  I    ++P   +  N     +      +   L+V+  L +      G GI
Sbjct: 181 TPEQLCGHPTIICRPMVP--WQLVNQENGEEFDYHPQKGVRLEVDEILMLTHAVKTGIGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +PDY          +  ++    +   T++  Y +      +++ F  F+  
Sbjct: 239 GYVPDYFALPMIAQGEMTHVLPGWSSKVRTLFMLYRDRDHLPLRVRLFVEFVMQ 292


>gi|240947921|ref|ZP_04752355.1| LysR family transcriptional regulator [Actinobacillus minor NM305]
 gi|240297784|gb|EER48231.1| LysR family transcriptional regulator [Actinobacillus minor NM305]
          Length = 290

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 126/295 (42%), Gaps = 13/295 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L +F  V + GS + A+E+L++  ++ISRQI+ LE  + I+LF R   G+  T  
Sbjct: 1   MNLNALSLFVSVVQDGSLSKASERLNVPIATISRQITELEKSLNIQLFDRKKSGVKPTMA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL+    +    L   +    E   + SG LRI+T   L +      L EF   YP +
Sbjct: 61  GQKLYEQVYQNIDNLLQVEKAFSE-HQEISGTLRISTFTGLEEVW--AWLDEFGTKYPKV 117

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I   + ++ +D+  D  D A R    + + + + R ++T      A PH L     P +
Sbjct: 118 SIHCQVTDRVLDLVEDNIDFAFRAGD-LHTDNAVARLVLTAKAKCVAHPHLLAQYGTPTT 176

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +   + F     K +       T+  P           N   +I  +   G G+ 
Sbjct: 177 PDDLARFPCVGFAKAQQKHLSIQLENKTLHLPY------VFASNDVYAIAYFIQQGRGVG 230

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L + I     D   LV ++ D    ++ V+  Y +    +  ++AF +F+  K 
Sbjct: 231 YLSENIANRLIDEYGLVEVLHDYPMRTYPVHLLYLKHRYPSSVMRAFLDFVMEKV 285


>gi|76804022|gb|ABA55965.1| LysR family transcriptional regulator [Vibrio sp. DAT722]
          Length = 305

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 140/299 (46%), Gaps = 13/299 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W  +R F  VA  GSFT AAE +  S++++S+ +S LE+ +G++L YR  R L LTE
Sbjct: 3   NLSWRGIRAFIYVAECGSFTSAAEAMGASKANVSQLVSELESSLGVQLLYRTTRQLRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G    R   E   +L+      Q+++ +  G++ + +    +G+ L+   +  F   YP
Sbjct: 63  IGDGYFRKCKEAMLQLDAAAEWAQQTTSEIKGRIHMNSVGGPIGEELIAPLVMSFQSAYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L      +D+  D  D  +R+ + +  S+LI R+L T+  H  A+P +L+   + 
Sbjct: 123 NVEVELDFSKHRVDLIEDSYDLVLRVGE-MPDSTLIARRLTTLRTHYVASPDFLERHPKI 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  ++L    LI  G +    M++ N    ++   G      ++  +  ++    V G G
Sbjct: 182 LIPEDLKALPLIH-GSVDHWIMKNHNEQRIINVGQG------IKAATGRTMRHAAVSGLG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  L D     +     L+ ++ +    +  +    P       ++K   ++I  +  +
Sbjct: 235 VTRLTDVYCHADLASGRLIEVLPEWSEKTL-LSLVCPPVKYQLPRVKMLMDWISERFEE 292


>gi|270262507|ref|ZP_06190778.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043191|gb|EFA16284.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 297

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNDLISFLVVARERSFTKAAAKLGVSQSALSHAIRGLEERLELRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E+    L E   +P+G +RI        ++L   LK FL  YPDI 
Sbjct: 65  ERLLNSIGPRFAEIESELDALSEMRERPAGNIRITAGEHAVDSVLWPMLKSFLADYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  IRL + +    +  R    + M   A+P Y +    P + 
Sbjct: 125 VEITVDNTLTDIVAGRFDAGIRLGEQVAKDMIAVRIAPDMRMVPVASPAYFERYGIPNTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q L  H  I     +P     + W    D    + R+   L  NS    +   +LG GIA
Sbjct: 185 QALQNHRCINM--RLPTMGGIYAWEFAKDGREIKVRVEGQLIFNSLRQRIDAALLGFGIA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V D      L R++++        Y  YP   ++T     F   +
Sbjct: 243 FVPEDTVTDELAGGRLARVLDEWCPLFPGYYLYYPSRRQHTTAFALFVEAL 293


>gi|269104859|ref|ZP_06157555.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161499|gb|EEZ39996.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 312

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 128/288 (44%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ +  SGSFT AA  L +S S +S+Q+  LE ++ +KL  R  R  TLTE+G + 
Sbjct: 8   RMAIFHTLVVSGSFTQAALTLGVSTSHVSKQLGLLEADLEVKLVQRTTRSFTLTEEGVQY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  +++ + ++     + +   + SG LR+  +   G   +   ++     +P++ +++
Sbjct: 68  AKYCAKLVNTIQDADAMVGDVRNEVSGVLRLGLSKSFGTMHIIPAIEHLRKQFPELHVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   ++  D  D  I   + I     + +KL        A+P YL +   P    EL
Sbjct: 128 SLFDHKANMVEDGLDLWITNVENIP-EGYVAQKLADTRFIVAASPEYLLHHPAPTHPNEL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +HN +T+     +      W            +S   +V+   ++   C+ G GIA L 
Sbjct: 187 QEHNCLTYQS---RHHSHNTWSFNKGTEGLFVTVSGNYRVDLAEAVRDACISGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNF 289
            Y++ D      L++++ D     +   Y  YP       K+ A  +F
Sbjct: 244 TYLLTDEFRQGKLIQLLPDWEADQAMHFYAVYPSRKHLPKKISAAISF 291


>gi|83644055|ref|YP_432490.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632098|gb|ABC28065.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 307

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 129/297 (43%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + +F  V R+G    A  ++ LS +S++ +++ LE     +L  R  R + LTE G+
Sbjct: 4   IDDIELFVRVVRAGGLAAAGREVGLSPASMTARMNALEARYQTRLLQRSTRSIALTEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     V  ++   +  L E   +  G LR+  T D G++ +   L +F+ L+P ++ 
Sbjct: 64  RFYEAGQRVVAEMAQAEAALLEKEGELRGSLRVTATSDFGRHYVAPALAQFVSLHPQVRP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
            L L +  +++  +  D AIR    +  S+LI R LV        A+P Y+ +  +P + 
Sbjct: 124 ALHLHDGVVNLIEEGFDLAIRYGN-LPDSNLIVRPLVADNRRVLCASPAYVASFGQPQTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  +          E      +  R +     + L  N    I Q+ + G GIAL
Sbjct: 183 EDLQAHRCLVMTRFGEMLAEWRFQSDSGWRTLTVE--AFLASNDGALIRQWALAGMGIAL 240

Query: 244 LPDYIVKDN---PNLVRIMEDVI-------TPSFTVYFCYPEALKNTGKLKAFRNFI 290
                V  +     L++++ D +         +  +   YP        +KAF +++
Sbjct: 241 KSWCDVSRDITQGRLLQLLPDQVVGLHGADAGAVGLQMIYPSRKYTPACVKAFMDYL 297


>gi|330971484|gb|EGH71550.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 308

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A   SF  AA  L    + IS++++ +E  +G++L  R  R + LT+ G++
Sbjct: 10  DEISALLAIASERSFVAAARLLQRHPTVISKRLAAIEARLGVRLIERTTRQVRLTDAGAR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L          +   + E    + +  G LR+A    +G+  L   L EFL  +P + ++
Sbjct: 70  LVDRLRAATGLITEAEQEATLGAAEIRGVLRLAMPAAMGRLWLSPLLPEFLFAHPQLSVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +    + +DI  +  D AIR+ + +  S L+ +KL        A+P YL+    P    +
Sbjct: 130 VDYSERFVDIIAEGIDAAIRIGE-LNDSRLVAKKLGDHRRILCASPAYLQRWGMPHRPGD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F  L      ++                CL  N   +++     G GI    
Sbjct: 189 LRDHNCLGFTGLA--SFPEWRLSDGERLETIVIGQGCLSSNDSEALLVAAKAGVGILGAG 246

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++++  +     L++++ D    P   +Y   P A        AF+ +I
Sbjct: 247 EWLMSRDIGAGRLIQLLPDWTLDPQGGIYLIRPSAKFTPAATLAFKTWI 295


>gi|313111122|ref|ZP_07796950.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310883452|gb|EFQ42046.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 309

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 145/289 (50%), Gaps = 5/289 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++ D + +++   VA + SFT AA  L L+QS +SR I  LE E+G++L +R  R ++LT
Sbjct: 8   IAMDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +   + +  +LE  +  L +    PSG L+I T   LG+ ++   L+E    YP
Sbjct: 68  PDGQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRRYP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +QI+  + ++ +D++ +  D A+RL + +    LI R L  +     A+P YL++   P
Sbjct: 128 QLQIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRSHGTP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L  HN  T  DL    + ++       +P+       L ++   +++   ++G G
Sbjct: 187 ERLEQLAGHNCPTVRDLHTGKLLEWQ-FQRDGQPLSLAVRGDLVLDVADALVDAALVGQG 245

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           I  +  ++ ++      LVRI++    P   V   YP + + + K+ A 
Sbjct: 246 IVQVMGFMAEEAIRRRRLVRILQPFEPPLCPVSLIYPPSRQCSLKIGAL 294


>gi|220923346|ref|YP_002498648.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219947953|gb|ACL58345.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 330

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 122/295 (41%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++ VF      G F+ A   L ++ S++S+ I  LE  +G+ LF+R +R +TLT 
Sbjct: 1   MDRFGEMLVFVRAVEDGGFSAAGRSLTMTPSAVSKLIGRLENRLGVTLFHRASRTVTLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +         +E  +  +        G LRI +      + L   +  F  L+P 
Sbjct: 61  EGEAFYTSALRAIEAIEEAEASVFGGRA-AKGTLRIRSMPTFATHQLAPLVPAFRRLHPA 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++  +L  +  ++     D AI + + +  SSL+ R+  +      AAP YL     P 
Sbjct: 120 LRLDFVLSMEPGNLLDGGVDVAIHVGE-LADSSLVARRFSSTRWIICAAPAYLAARGIPT 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H  + F    P  +          R +       +  N    ++     G+GI
Sbjct: 179 SLADLAAHECLNFPTTAPWSIWSVRDGPGTLRRLK--PAGSVAANQGQMLLAMARAGAGI 236

Query: 242 ALLPDY-IVKD--NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             L ++ IV D  +  LV ++ +  +     +Y  Y      + +++ F  F+  
Sbjct: 237 VRLAEFHIVGDLRSGRLVELLPEHHSGAEDPIYALYSSRRYLSQRIRVFLEFLDA 291


>gi|206559558|ref|YP_002230319.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035596|emb|CAR51482.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 301

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 10/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +  +F  + +SG  +  A  LH S   +SR+++ LE  +G++L  R +R   LT++G
Sbjct: 3   NISEFALFRAIVQSGGISAGAFALHSSPPVVSRRLAALERRLGVRLAQRSSRRFKLTDEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+     +  ++   + E+        G LRI    D G++ +   L +F   +  + 
Sbjct: 63  LLLYERCCSILDQIRDAEAEVASRGGAARGLLRIGAPADFGRHHIAPLLADFTSRHSGLY 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            QL+  +  +++ +D  D  +R   P     +I RKLV+      AAP YL     P+  
Sbjct: 123 TQLLPSDAGLEVGVDPCDVILRFGLP-NDLGVIARKLVSTASVLCAAPAYLAKHGAPMQP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            EL  HN +    L  +   +  W    +    + R+   L   S   ++Q+ + G GI+
Sbjct: 182 AELGDHNCL---RLQGRHRLNDVWHFDNEGTRQDVRVDGTLSSTSGEVLLQWALAGEGIS 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
               + V ++     LVR++ +   P+  +Y  Y        +++ F ++I   L+AR
Sbjct: 239 QEAYWDVAEHIANGRLVRVLPEYTCPALDLYAIYASGSPIPPRIRLFVDYIDHVLRAR 296


>gi|52424391|ref|YP_087528.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306443|gb|AAU36943.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 310

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 124/291 (42%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L VF  + R  SF+ AA++L  S S I+++I+ LE  +   LFYR+ R + LT  G 
Sbjct: 11  IEDLNVFLTIIRKNSFSGAAKELGQSNSYITKRINILEDHLHTSLFYRNTRNIKLTAAGE 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +      +  K+++    + E      G L I ++   G+  L   +  F   +P++ +
Sbjct: 71  YVQNQAIAIIDKMDSLMTNIVEDKKSMFGHLHICSSFGFGRTHLAKPISLFAKQHPNLSL 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D+  +  D  I +   +       +KL        A+P YL++   P  ++
Sbjct: 131 DLTLTDHKLDLIKENIDLEIAVGNDLND-RYFAKKLANNRRILCASPDYLQSYGLPKKVE 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KHN +   +          +   + + I       L  N+   I+Q+ + G GI   
Sbjct: 190 QLSKHNCLFLKEKNSSFGVWKLFNGKILKSITV--NGGLTTNNGEVILQWALEGHGIIYR 247

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +  +    +  LV I+ +       ++  YP  L  + K + F NF+  
Sbjct: 248 SLWDAEKYLISGELVHILPEYY-EDAPIWVVYPNKLSESLKTEIFVNFLTE 297


>gi|167849749|ref|ZP_02475257.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
          Length = 308

 Score =  221 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+
Sbjct: 1   MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   LE  +   + +   P G LR+     L +  +   L +FL  YP 
Sbjct: 61  DGEAYYRRCVRLIADLEEAEGAFRAA--APRGLLRVNLQGTLARYFVVPALPDFLARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IRLHIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            +  L  H  + +  +     +      TVD  + E R+ + + V          V G G
Sbjct: 178 ELAALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++  +
Sbjct: 236 IVQVPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRER 291


>gi|90420249|ref|ZP_01228157.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335583|gb|EAS49333.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 302

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ VF  V   G F+ AA    +S S++S+ ++ LE  +G +L +R  R   LT +G 
Sbjct: 9   FAEMEVFATVVERGGFSAAARVSGMSASAVSKLVARLEARLGTRLVHRTTRRFQLTPEGQ 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +   L   +     +  +P+G++R+ ++     ++L   L +FL  YP+I +
Sbjct: 69  GFYDRAVAILADLSDAERA-AGAGERPAGRVRLNSSASYISHVLAPILPDFLARYPEIGL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++  ++ +D+  +  D AIR   P+ SS+L+ RKL    M   AAP ++     P +I 
Sbjct: 128 DIVQTDQVVDLVAERTDIAIRAG-PMPSSNLMARKLGQTRMMIVAAPGWVARHGLPRTIA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL+ H  + FG    + M+ +   +     +  P +  +Q+N    + +  + G G A L
Sbjct: 187 ELEAHERLGFG--YARAMKGWPLRSDAGEAVTLPTLGRVQINDGEGLRRLALAGVGPARL 244

Query: 245 PDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYP-EALKNTGKLKAFRNFIFL 292
             + ++ +     LV ++ED         +  +  ++     + +A  +F+  
Sbjct: 245 AAFTIRADIAEGRLVPLLEDANPGDEEAFHAVFIGQSASLPARARALLDFLAE 297


>gi|49084716|gb|AAT51225.1| PA1312 [synthetic construct]
          Length = 304

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 133/296 (44%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+   F  V   G  + AA+ L  +++ +S  +  LE E+G+ L  R  R + LT+ G
Sbjct: 3   SLDRFETFRAVVDCGPLSAAADTLGQTRAVVSFNLKRLEAELGVSLLSRSTRRMALTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++   +V  +      + +    +  G LR+ TT + G   L   L+ F  L+P +Q
Sbjct: 63  ERFYQRCVKVLDEARLAIDDARAEHGELRGSLRVTTTQEYGLRQLVPALQAFARLHPALQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE--PL 181
           +QL   +   D+  +  D AIRL + ++ S+    +L +  + A A+P  L    E  P 
Sbjct: 123 VQLSTSSLHADLIGERFDVAIRLGR-LEDSTHHAVQLASFEVLAVASPACLAALGEPPPT 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++ L++   +    L               R    PR   L  ++  ++  + + G GI
Sbjct: 182 DLESLERLQNLGHSRLADSLPWQVRAPDGALRSYRGPRHPMLLADNAAALRAFALDGLGI 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+LPD++V+ +     L R++ D   P   V+  YP       K++AF +F+  + 
Sbjct: 242 AVLPDWLVQADLRCGALQRLLADHGFPLQGVHAVYPPTRHLPSKVRAFIDFLKTRL 297


>gi|52426171|ref|YP_089308.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308223|gb|AAU38723.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 305

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 85/301 (28%), Positives = 136/301 (45%), Gaps = 19/301 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L++F  V   GS +  A + +LS S +SR I  LE + G  LFYR+ R +T TE G  L
Sbjct: 10  ALKLFLQVLELGSLSEVARRENLSASMLSRLIKQLEDDWGAALFYRNTRAITPTETGLLL 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++  + +  +  +   + + +G +RI   +  GQ  +  +L E    YP++ + L
Sbjct: 70  AEYARQIVSQFQAAEQAITAQTAEIAGTVRINAPVFFGQLHIIPHLAELQARYPNLIVNL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +  ID   D  D   RL  P+  SSL  R L   H    A+P YL+    P    +L
Sbjct: 130 VQTDDYIDPFTDSTDIIFRLA-PLNDSSLKVRILAQQHFCLAASPSYLQKYGTPKIPADL 188

Query: 187 DKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            KH+ + +    G L     E  NW A        P+I  L  N+  +I   CV G GIA
Sbjct: 189 AKHHALLYKGKTGTLRWLLQEGENWQAC------SPKI-ALTSNNGNAIATACVQGMGIA 241

Query: 243 LLPDYIVKD---NPNLVRIMEDV--ITPSFTVYF--CYPEALKNTGKLKAFRNFIFLKAR 295
           LL ++   D      +VR++ +    T +  VY    YP+    +  ++A  ++     +
Sbjct: 242 LLANWAASDLLKEGKVVRLLPEYNFSTQTVPVYVAMLYPQTAFISPSVRAVLDYFREIFQ 301

Query: 296 D 296
           D
Sbjct: 302 D 302


>gi|209549261|ref|YP_002281178.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535017|gb|ACI54952.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 299

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 120/298 (40%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D+  LR F + A   +F   A +L ++ ++++R I+ LE E+G++LF R  R ++LT
Sbjct: 1   MN-DYKALRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEAELGVQLFVRTTRQVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+            LE  + E+  +     G+LRI+     G+ +L   L  F   YP
Sbjct: 60  TDGAIFAAQIQPAVKTLEEARREVMNAHKSEEGRLRISAPTWFGKTVLPPILSGFKERYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +  ++ L +  +DI     D AIR+         I RK+  +     AAP         
Sbjct: 120 KMSFEISLSDGLVDIVDGDYDLAIRISSQPSDKFTIWRKIRVVPRILVAAPG--SRFATM 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               EL   + + +     +     NW L+     +          NS   +      G+
Sbjct: 178 EHPNELTPDDCLAYSGESRR----ENWVLSDGGSSMTISAGRAFSANSGEVLADMAADGA 233

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+ALLP + + D+     L+ +      P   +   YP       ++ +F  F   + 
Sbjct: 234 GVALLPGFNIADHIRSGRLIHVFHGWAPPDLWLTLFYPPYQALPPRIASFSKFFEEQV 291


>gi|116693290|ref|YP_838823.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116651290|gb|ABK11930.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 380

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 138/301 (45%), Gaps = 7/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  + R GSFT AA+ L +S  + SR +  LE  +G+ L  R  R + LT
Sbjct: 17  MEITLQAMSIFTYIVRVGSFTAAAKLLGISAGTASRLVRNLENHLGVTLLQRSTRCVRLT 76

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G++       V  ++E  +  L  +     G+L +    ++   +L   + EF L +P
Sbjct: 77  TEGAQYFEHCERVLGEIEEVKAHLAGARDVARGRLSVDIDQEIAHTVL-PLIPEFRLTFP 135

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L +      +     DCAI +  P+  SSL  R++   +    A+P YL     P
Sbjct: 136 EVELRLEIGGDPGGLVEHGIDCAIAVG-PLPDSSLRGRRIGDFNAVTVASPAYLSRRGVP 194

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +LD+H++I +       + DF +       +       + V+   S +QY V G G
Sbjct: 195 HELGDLDRHDIIHYSPRRFGPVRDFRYCVD-GGEVSLKFPERISVSDARSAVQYAVEGIG 253

Query: 241 IALL-PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA +    +V +  N  LV ++ +    S  ++  Y +       ++AF +++ ++ R W
Sbjct: 254 IAQVCGRMVVNEIANGRLVSLLAENRPTSLQIFALYVDQRYIPRSIRAFIDWLEIQLR-W 312

Query: 298 K 298
           +
Sbjct: 313 R 313


>gi|37675912|ref|NP_936308.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37200452|dbj|BAC96278.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 300

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 128/300 (42%), Gaps = 16/300 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++ F  VA   SFT AAE L LS+  ++R +  +E+ +  +L +R  R ++LT 
Sbjct: 1   MDRLDAIKSFIEVANCRSFTQAAETLSLSRLQVTRHVQEVESWLQQRLLHRTTRKVSLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  +    +++  +S    +G +RI+  I   Q+ L   +  F  L+P 
Sbjct: 61  AGEQAYIRCQRILDEAAALELDAAQSRDSLTGSIRISAPIGFSQHHLIDAVSAFTELHPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++  ++   +  +  D A+R        +LI RKL+ I     A   YL      +
Sbjct: 121 VMVDILASDRFSQLVDERVDVALRYTDQ-PDETLIARKLMDIDAVVCATQGYLDEHEPIV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             ++L  HN +         +    W    D  I E  +   ++ N   +++   + G G
Sbjct: 180 VPEDLANHNCLVH-------LSTHLWRFVADNQISEVSVKGNIRANDLSTLLGAALAGKG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  LP  +         LV ++     PS +++  Y      T  ++ F +FI   A+ W
Sbjct: 233 VIRLPCDLANPLLQQGKLVALLTPYTLPSSSLWAVYLSRSYQTPVVRQFIDFI---AQRW 289


>gi|119775523|ref|YP_928263.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119768023|gb|ABM00594.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 293

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 133/300 (44%), Gaps = 15/300 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L +   V   G F+ AAE L +  + +SR +S +E ++G+ +  R  R + LT
Sbjct: 1   MRTRSDDLEILLTVVDCGGFSAAAELLDIQVARVSRAVSKVENQLGVSILNRTTRRIELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +          +++  + ++      P+G+LR+        + L   +K F  +YP
Sbjct: 61  DEGRQFVESVRGGLLQIQRAEEDIITRGEVPAGRLRVDAASPFVFHQLVPLIKPFNQMYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+I+L  +   +D+     D AIR+  P+  S+L  R L    ++  AAP YL     P
Sbjct: 121 DIRIELTSNEGFVDLLEKRTDVAIRIG-PMSDSTLHARPLGRSRLYIVAAPEYLAQRGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L+ H+ I F    P+ + ++     V           L  ++  ++ Q  + G+G
Sbjct: 180 RKTADLEHHDTIGFS--APRSLNEWPLKGFVGLE------PALTSSNGETVRQLALSGNG 231

Query: 241 IALLPDYIVK---DNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L  ++V    +   L+ ++E      T    V   + ++     ++  F +FI  K 
Sbjct: 232 IACLSGFMVNKDIEEGRLMVLLETETMMNTAREQVNAVFYKSSSVAKRISVFIDFIQPKL 291


>gi|27380659|ref|NP_772188.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27353824|dbj|BAC50813.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 297

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR  SFT AA QL +SQS++S  +  LE  +G++L  R  R +  TE G
Sbjct: 5   NVNDLLAFLAVARERSFTRAAAQLGVSQSALSHTVRALEERLGLRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R     + +++     L      P+G +RI T     Q +L   L   L  YPDI+
Sbjct: 65  ERLLRNIGPRFAEIDAELSALTALRETPAGTVRITTGEHAAQTILWPTLARLLPRYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++D    DI  +  D  +RL + +    +  R    + M    +P Y     +P   
Sbjct: 125 VELVVDYGLTDIVAERYDAGVRLGEQVAKDMIAVRIGPEMRMAVVGSPAYFTARGKPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L +HN I     +P     + W         + R+   L  N+ L  M   + G G+A
Sbjct: 185 QDLTEHNCINL--RLPTYGGLYAWEFEKRGHAMKVRVDGQLVFNTGLLRMNAALAGLGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+ +VK    +  L+R++ D   P    +  YP   + T         +
Sbjct: 243 YIPEDLVKREIADGRLIRVLADWCAPFAGYHLYYPSRRQPTPAFAVLVEAL 293


>gi|116050491|ref|YP_790690.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585712|gb|ABJ11727.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 301

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 68/272 (25%), Positives = 121/272 (44%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            Q++LS +++S+ ++ LE  + ++L  R  R ++LTE G    +    +   LE     L
Sbjct: 24  RQMNLSPAAVSKNVAELEAHLKVRLINRTTRSMSLTEAGEVYRQRLERILDDLEAADAAL 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
                 PSG LR++  + L    L   +  FL  YPD++++L+L +   D+  +  D A+
Sbjct: 84  TSMQQGPSGLLRVSAPLTLALTCLTPAIPAFLQRYPDLRLELLLQDGRQDLIAEGIDLAL 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R    +  S L+ R L+ +     AAP YL    +PL  + L +H  I F          
Sbjct: 144 RGSDRVADSGLVARPLLILEHVLCAAPAYLGQHGQPLRPEALREHECIRFS----LSGHA 199

Query: 205 FNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIME 260
             W     R  +  P     +V+S L++    + G G++L+P   V+       LV ++ 
Sbjct: 200 DRWTFRKGRECVAVPIAGRYRVSSSLAVRDALLAGFGLSLIPRLYVQAELAEGRLVELLA 259

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                   ++  YP   +  GK + F +F+  
Sbjct: 260 GWKADETAIHAVYPS-RQLAGKTRVFLDFLTE 290


>gi|227823412|ref|YP_002827385.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227342414|gb|ACP26632.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 317

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 136/294 (46%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF      G F+ AA    ++ S++S+ +  LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEVFAKAVELGGFSAAARHFRMTPSAVSKLVLRLEERLGVRLVNRSTRKLQLTPEGHAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H  T+ +   ++  +     +   P+G++R+      G ++L   + EF   +P + +++
Sbjct: 71  HERTTRILADIDEAER-CASAGESPTGRVRLNVNASFGTHILMPLVPEFRARFPAVTLEI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  +  +D+    AD A+R   P++ S+LI RKL    M   AAP Y++    P S+ +L
Sbjct: 130 VQTDAVVDLMEARADVAVRAG-PLKGSTLIARKLGATRMMIVAAPSYVERNGMPASLGDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + F  +          +      I  P    +QV+    +    + G+G+A L +
Sbjct: 189 RAHERLGFCYMRVVDGWP---IRDGGETIVLPASGAVQVSDGEGLRHLALAGAGMARLAE 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           + V+++     L+ ++ED+       ++  +  +      +++A  +F+   AR
Sbjct: 246 FAVREDVRAGRLLPVLEDLNPGDLEEIHAVFLGQGGALPSRVRAVLDFLASHAR 299


>gi|237729325|ref|ZP_04559806.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226909054|gb|EEH94972.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 302

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 126/301 (41%), Gaps = 11/301 (3%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    L  F ++   GSF+ AA+    + S+ISR  S LE  +G KL +R  R L L
Sbjct: 1   MNPNLLPDLATFVLIIDQGSFSAAAKASGATPSAISRSASRLEKALGSKLLHRTTRKLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +E G  ++    E+ H  +              G+L ++    +G+ ++   + EF   Y
Sbjct: 61  SETGKIVYAHAQEMLHAAQMAVDSGSSRQTIAQGQLTLSVPKAVGRFVIHPLMAEFFTRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L L+++ +D+  D  D A+R+ +   S  L  + L+ +     A P YL+    
Sbjct: 121 PQVDVCLRLEDRYMDLIDDGVDLALRISQS-PSPGLYGKPLMPVSHVICATPEYLRKHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   Q L +H+ I+ G+        F     ++      R +    N     +       
Sbjct: 180 PEHPQALREHSCISLGETPADSRWKFRRGELMETIQTHGRYAA---NHTGVRLDAVKKDL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  LP +   +   N  +V+++ +       S  ++  +        +++A  +++  K
Sbjct: 237 GIGSLPLFTASEALANGEIVQVLPEWEFISDYSGELWLLWTRNQHMPARMRAMIDYLSEK 296

Query: 294 A 294
            
Sbjct: 297 V 297


>gi|82778187|ref|YP_404536.1| DNA-binding transcriptional activator GcvA [Shigella dysenteriae
           Sd197]
 gi|81242335|gb|ABB63045.1| positive regulator of gcv operon [Shigella dysenteriae Sd197]
          Length = 305

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWLGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAKHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|53718051|ref|YP_107037.1| DNA-binding transcriptional activator GcvA [Burkholderia
           pseudomallei K96243]
 gi|53724941|ref|YP_101904.1| DNA-binding transcriptional activator GcvA [Burkholderia mallei
           ATCC 23344]
 gi|67642410|ref|ZP_00441167.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei GB8 horse 4]
 gi|76809715|ref|YP_332037.1| DNA-binding transcriptional activator GcvA [Burkholderia
           pseudomallei 1710b]
 gi|121599068|ref|YP_991572.1| DNA-binding transcriptional activator GcvA [Burkholderia mallei
           SAVP1]
 gi|124386583|ref|YP_001027355.1| DNA-binding transcriptional activator GcvA [Burkholderia mallei
           NCTC 10229]
 gi|126450378|ref|YP_001082706.1| DNA-binding transcriptional activator GcvA [Burkholderia mallei
           NCTC 10247]
 gi|167003219|ref|ZP_02269009.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei PRL-20]
 gi|167736883|ref|ZP_02409657.1| glycine cleavage system transcriptional activator [Burkholderia
           pseudomallei 14]
 gi|167813987|ref|ZP_02445667.1| glycine cleavage system transcriptional activator [Burkholderia
           pseudomallei 91]
 gi|167822508|ref|ZP_02453979.1| glycine cleavage system transcriptional activator [Burkholderia
           pseudomallei 9]
 gi|217419875|ref|ZP_03451381.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226193664|ref|ZP_03789267.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254176853|ref|ZP_04883510.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei ATCC 10399]
 gi|254187916|ref|ZP_04894428.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196784|ref|ZP_04903208.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254202017|ref|ZP_04908381.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei FMH]
 gi|254207349|ref|ZP_04913700.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei JHU]
 gi|254258246|ref|ZP_04949300.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254357607|ref|ZP_04973881.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei 2002721280]
 gi|52208465|emb|CAH34399.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|52428364|gb|AAU48957.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei ATCC 23344]
 gi|76579168|gb|ABA48643.1| glycine cleavage system transcriptional activator [Burkholderia
           pseudomallei 1710b]
 gi|121227878|gb|ABM50396.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei SAVP1]
 gi|124294603|gb|ABN03872.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei NCTC 10229]
 gi|126243248|gb|ABO06341.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei NCTC 10247]
 gi|147747911|gb|EDK54987.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei FMH]
 gi|147752891|gb|EDK59957.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei JHU]
 gi|148026671|gb|EDK84756.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei 2002721280]
 gi|157935596|gb|EDO91266.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160697894|gb|EDP87864.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei ATCC 10399]
 gi|169653527|gb|EDS86220.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|217397179|gb|EEC37195.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225934242|gb|EEH30226.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|238523559|gb|EEP86997.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei GB8 horse 4]
 gi|243061216|gb|EES43402.1| glycine cleavage system transcriptional activator [Burkholderia
           mallei PRL-20]
 gi|254216935|gb|EET06319.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 321

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF RH + L LT+ G 
Sbjct: 9   LNALRVFEAAARHESFSRAADELSVTHGAVSHQMRALEAELGVPLFVRHGKRLALTDAGG 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L     E++ S      +L ++T        +   +  F+  +P+I +
Sbjct: 69  RYAQQVRAALALLADATREVRASERDK--RLVVSTLPSFAARWITPRIGPFIERHPEIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D + D  D AIR    +    L    L+        AP  L     P +  
Sbjct: 127 ELRASDSLVDFARDDVDVAIRFGHGV-YPGLHVEPLLDETFFPVCAPT-LNGGMLPETPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T    + EP+   L  +S   ++Q  + G GIAL+
Sbjct: 185 DLVRYPLLRSDDELWRPWFDAAGLDT----LTEPKRGVLYQDSSN-LLQAAIDGQGIALV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         +VR+ +      +  +F  P +L  T +++A R+++  +   ++
Sbjct: 240 RRSLAVPEVAAGRIVRLFDIAGPSPWHYFFVCPPSLAQTPRVQALRSWLLDEIARFR 296


>gi|213418103|ref|ZP_03351172.1| putative DNA-binding transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 294

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 76/276 (27%), Positives = 125/276 (45%), Gaps = 7/276 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSFT AA QL +S SSIS+ ++ LE E+ +KL  R  R + LTE G   ++    + H++
Sbjct: 2   GSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSIGLTEAGKIYYQGCRRMLHEV 61

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           +    +L   +  P G LRI  +  + QN+L G   + L  YP + + L+      D+  
Sbjct: 62  QDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKLLKEYPGLAVNLVTGIPAPDLIA 121

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           D  D  IR+   +Q SSL  R+L  + M   AA  YL     P    +L  H+ + +   
Sbjct: 122 DGLDVVIRVGA-LQDSSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADLSSHSWLEYSV- 179

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PN 254
             +   +F  +A                N  ++++++   G+GIA +P   V D     +
Sbjct: 180 --RPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGTGIAYVPLMWVIDEINRGD 237

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  ++    +    VY  Y E  K   K++   N +
Sbjct: 238 LEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINAL 273


>gi|114769442|ref|ZP_01447068.1| putative transcriptional regulator, lysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114550359|gb|EAU53240.1| putative transcriptional regulator, lysR family protein [alpha
           proteobacterium HTCC2255]
          Length = 303

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 123/291 (42%), Gaps = 8/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LRVF  +   GS T     L ++ +  S++I  LE  +G++LF R  R LT T  G  
Sbjct: 5   DSLRVFARIIELGSITSGGRDLRMTPAVASKRIKELEKHLGVRLFNRTTRSLTPTGVGRV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   +V   ++  +  + + S  P G +RI T +  G+ ++   +  F+  +P  +I+
Sbjct: 65  FYKEAKKVLASIDNAENAISQFSDTPRGVIRITTPLGFGRRVIAPLVPSFVDKFPGTEIR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + L ++ +DI  +  D A  +  P   S+L  RK+        A+P YL     P    +
Sbjct: 125 MRLSDRKVDILAEELDMAFFIGTP-PDSNLKLRKIADCKRILCASPEYLSRMGTPSFPDD 183

Query: 186 LDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +    HN +      P+  E F  + T +             +    + ++ +LG GI  
Sbjct: 184 IIDGLHNCLLL--RYPRSPEYFWTVKTNNGSQKLNVSGKYDADDNDVLTKWALLGHGIIN 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            P + ++D   N  L+ ++         +   YP       K+  F + I 
Sbjct: 242 KPHFEMEDYIKNGKLIEVLPSNPPIPSIIGCLYPHKKLQDPKMIYFMDHII 292


>gi|332993483|gb|AEF03538.1| LysR family transcriptional regulator [Alteromonas sp. SN2]
          Length = 300

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 123/292 (42%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF   A+ GSF  AAEQL +S  +++R I+ LE ++  +LF+R  R + LTE
Sbjct: 1   MDRIQAMSVFAEAAKLGSFVSAAEQLSMSAPAVTRAIATLEAQLNTRLFHRTTRRIRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   +  ++  +    + P G L +   +  G+  +   + +FL  +P+
Sbjct: 61  AGIQYLNDVQRILADIAQSEAAIAGVQLLPKGTLSVTAPVLFGELYITPIIAQFLRDFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +   + +  +D+     D AIR+ KP + S L    +  +     A+P YL N     
Sbjct: 121 VNVHGYMYDNIVDLLDTKIDVAIRISKP-KDSGLYATTVGYVRKVTVASPDYLANAPNLK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H L+   D     + +F       + +        + N   S +     G GI
Sbjct: 180 TPEDLKHHTLLYPSDFKEPPVWNF---KRNGKTVAIRLQPRFECNQNRSTISAAKSGLGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             L  Y V D      LV ++++       +     E   N  K+K F  ++
Sbjct: 237 TRLMSYQVADAIEKGELVSVLDEFNDEKLPIQVVSLEGRHNLEKVKKFVEYV 288


>gi|182678391|ref|YP_001832537.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634274|gb|ACB95048.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 310

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 125/296 (42%), Gaps = 6/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +    +++R F  VA  GS +  A +  + QS+++R +  LE  VG+ L  R  R +TLT
Sbjct: 4   LDVTLERIRTFVRVAERGSLSAVAREQEVGQSTVTRHLRELEEAVGVPLLSRTTRRVTLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++GS+ +  + ++   +E    E + +   P+G +RI+ T   G   +   +  F   YP
Sbjct: 64  DEGSRYYANSVQILRLVEQAGDEARGTRGAPAGTIRISCTAAFGVLHVSRMIFAFQDRYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I + L L ++ +D+  +  D A+RL  P+  SS+  R L        AAP YL     P
Sbjct: 124 NIGVDLSLTDERVDLVREGVDIALRLG-PLTDSSMKLRSLGQSRRLLVAAPSYLAARGTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              Q+L  H  I    +     +              P     +++  L+  +  V G G
Sbjct: 183 AVPQDLSAHEGIRMSHVAGS--DTLILQGPGGERHAVPFGGRFRIDHGLAAREAFVAGRG 240

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I     ++V D      L  I+ D   P   +            +++   +F+  +
Sbjct: 241 IGPAHRWLVDDLLQTSRLQEILPDYSLPPAPLSMLIVPERAGIARVRLVADFLAEQ 296


>gi|16263602|ref|NP_436395.1| GstR transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|14524309|gb|AAK65807.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 301

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 129/295 (43%), Gaps = 9/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F  +A SGS T AA +L+ S  ++SR ++ LE +VG++L +R  R   L+E G 
Sbjct: 8   LEDLEAFIHIAESGSLTRAATRLNRSLQAVSRSLTSLEVDVGLQLVHRTTRHSALSEAGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R       ++   Q+E       PSG LR+   +  G + L   + E++  YP  ++
Sbjct: 68  AFYRRVKPAVLEIREAQLEAAGRRTGPSGILRVGAPMLFGPDFLVPIVAEYIESYPQAEV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D++    D  +R+   +  S+L  ++L  +    + AP Y      P    
Sbjct: 128 DLSLTDAFVDLASKGIDVVVRIAD-LPDSNLQSKRLGALRRVVFGAPSYFARNGRPEHPA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  I    +         W   +D       +    + N+  +I      G G+  
Sbjct: 187 ELRQHACI----VRTIGNRPGQWAFQIDGKRRMVGVRGSFRSNAMAAIYSAVRSGLGLGY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            P + ++   D   +  ++++       ++  + E+ +   K++AF + + ++ R
Sbjct: 243 SPLWQIRHLVDAGQVEIVLQEFEPKPVPIHALWQESTRPPAKVRAFVDLLAMRLR 297


>gi|300718142|ref|YP_003742945.1| glycine cleavage system transcriptional activator [Erwinia
           billingiae Eb661]
 gi|299063978|emb|CAX61098.1| Glycine cleavage system transcriptional activator [Erwinia
           billingiae Eb661]
          Length = 305

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 128/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFTSLNDATRKLQARSA--KGALTVSLLPSFAIQWLVPRLTSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RISAVDRDEEKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L    L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLANQTLLH--DASRRDWQSYT------RQLGVGHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQTELEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|258624379|ref|ZP_05719327.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258583341|gb|EEW08142.1| transcriptional regulator, LysR family [Vibrio mimicus VM603]
          Length = 323

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 22  LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 81

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L     +L E S    G L I+         L   L +F    PDI +
Sbjct: 82  SYFLDIKDIFSSLAEATDKLLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDV 139

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +   +++
Sbjct: 140 RIKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPALLLGNKPMETLR 198

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+   A  +             +    ++Q    G G+AL 
Sbjct: 199 DLSFHTLLH-----DTSRKDWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALG 253

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 254 NNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 307


>gi|82702601|ref|YP_412167.1| LysR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82410666|gb|ABB74775.1| transcriptional regulator, LysR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 301

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 125/296 (42%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +      G F  A   L + +S +SR+I+ LE  +G++L  R +R  T+TE G
Sbjct: 3   DLNDLYYYVQAVDHGGFAQAGRALGMPKSKLSRRIATLEERLGVRLIQRSSRRFTVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  Q  ++    +P G +R+   + L    +   L +F++ YP I 
Sbjct: 63  QTYYEHCKAMLVEAEAAQEAIEAMQAEPRGVVRLTCPVALLHVNVGVMLADFMVRYPHIT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P+Q S L+ R L         +   + +   P +
Sbjct: 123 LHLEATNRRVDVLSEAVDVAIRVRPPPLQDSDLVMRVLADRGQCLVGSQALVWHFGFPRT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     +  G   P+ +  +              +  L     +++    + G G+ 
Sbjct: 183 PGELSNWPSLGLG--TPQQIHKWVLHGPNGAQATLHHMPRLITTDMITLRNAALAGVGMV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP  +V+D+    +LVR++ D       V+  +P        ++   +F+  + R
Sbjct: 241 QLPVLMVRDHLAAGSLVRLVPDWTPHREIVHAVFPSRRGLLPSVRTLIDFLAERFR 296


>gi|149911851|ref|ZP_01900452.1| putative transcriptional regulatory protein (LysR family)
           [Moritella sp. PE36]
 gi|149805056|gb|EDM65081.1| putative transcriptional regulatory protein (LysR family)
           [Moritella sp. PE36]
          Length = 301

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 78/303 (25%), Positives = 131/303 (43%), Gaps = 15/303 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V   GSF+ AAE   +  SS+SR+++ LE  +G  L  R  R ++LTE
Sbjct: 1   MDQLRAIKYFVKVVEHGSFSKAAELFSVPPSSLSRRVADLEKSLGATLLKRTTRTVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++  SEV   L  +   ++     P G L I+  +  G+ +L   L EF  LYP 
Sbjct: 61  IGQIYYQQVSEVLSLLAYSDETVRNYQATPMGVLNISAMVGFGERILLPLLDEFRELYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + L +    +  D  D AIR         ++  KL+  +    AAP YLK    P+
Sbjct: 121 ITLNVSLSDDLSTLGRDEVDLAIR-GGYAPDERVLAIKLMENNFIVVAAPRYLKTHGVPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  EL +H  + F            W+  +D    +      L  N+   +++  V G G
Sbjct: 180 NAMELKQHKGLYFKTPSGPT----PWICEIDNQRQDVSAEQVLISNNGKWLVEKAVAGLG 235

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPS--------FTVYFCYPEALKNTGKLKAFRNFIFL 292
           I ++P + ++       + E  ITPS          ++  Y +      K+KA  +F+  
Sbjct: 236 ILMMPRWALEPYIESGELTELTITPSIDITRKANLGIFLLYQKQRYQVPKIKAAVDFLVE 295

Query: 293 KAR 295
           + +
Sbjct: 296 RVK 298


>gi|172062993|ref|YP_001810644.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995510|gb|ACB66428.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 324

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 127/293 (43%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F  V   GSF+  A+++H+S S+++R+I+ +E  +G+ L +R    +TLTE G 
Sbjct: 13  LGAMRAFVRVVEMGSFSAVAKEMHVSTSTVARKITAIEEALGVALLHRSTHSVTLTEAGH 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L+ T   + E + +PSG L++   +  G+  L   +  FL  YP IQ+
Sbjct: 73  IYLERAVTLIADLDDTLRVVAELNAQPSGPLKLTAPVAFGRRHLAPLIAPFLARYPTIQL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +   D+     D  I   +     +L+  +L        A P YL  C  P +  
Sbjct: 133 DVRLTDNHNDLVAGGYDLDIHEGENYLD-NLVVHRLSRNDSILCATPGYLDRCGRPATPD 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +  + P+    +  +    R    P    L  +    +++    G G+A  
Sbjct: 192 DLLHHNCLRY--VHPEGDPRWELVRGDARHSVLP-AGNLVTDHSELLLEATCAGLGVAEF 248

Query: 245 PDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++V+D   +  L  ++             +Y  Y    +++ KL+  ++F+
Sbjct: 249 EIWLVRDLLASGRLEAVLPRYRLHNKLTGEHIYIAYLANRRSSAKLRVLKDFL 301


>gi|190894416|ref|YP_001984709.1| putative LysR family transcriptional regulator [Rhizobium etli CIAT
           652]
 gi|218516864|ref|ZP_03513704.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
 gi|190700077|gb|ACE94159.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327191902|gb|EGE58888.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 299

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 122/298 (40%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D+  LR F + A   +F   A +L ++ ++++R I+ LE E+G++LF R  R ++LT
Sbjct: 1   MN-DYKALRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEAELGVQLFVRTTRQVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+            LE  + E+  +     G+LRI+     G+ +L   L  F   YP
Sbjct: 60  TDGAIFAAQVQPAVKTLEDARREMMNAHKAEEGRLRISAPTWFGKVVLPPILSGFKEKYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +  ++ L +  ++I  D  D AIR+         I RK+  +     AAP       + 
Sbjct: 120 KMSFEISLSDGLVNIVDDDYDLAIRISSQPSDKFTIWRKIRVVPRILVAAPG--SRFVDM 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               EL   + + +     +     NW L+     I          NS   +      G+
Sbjct: 178 SHPHELTPDDCLAYSGESRR----ENWILSDGGSSIAISAGRAFSANSGEVLADMAADGA 233

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+ALLP + + ++     LV +      P   +   YP       ++ +F  F   + 
Sbjct: 234 GVALLPGFNIAEHIRSGRLVHVFRGWAPPDLWLTLYYPPYQALPPRIASFSKFFEEQV 291


>gi|104782313|ref|YP_608811.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95111300|emb|CAK16020.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 305

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 130/297 (43%), Gaps = 11/297 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F   A   SF+ AAEQL  + S+I++ ++ LE+E+G++LF R  R + LTE G+  
Sbjct: 6   ALTLFVAAAEHRSFSRAAEQLGKTPSAITKAVAHLESELGVRLFERTTRRMALTEAGTLY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +    L+    E+++   +  G LRI      G   L      F+  +P +++++
Sbjct: 66  LEGARQALMHLQRVTEEVEQLQHELRGTLRITAPPSFGPAFLNQVCCRFMNEHPQVRLEV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L++ + D+     D ++R   P     LI + L+   +   A+P YL      ++++  
Sbjct: 126 NLNDANDDLIDGGYDLSLR-DGPTDQPELIAQPLIENRVILCASPGYLARRGSAITLENY 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H+ +      P     F W+    + +   + +  L  +S+  ++   + G G+  +P
Sbjct: 185 AQHDWLLLRH--PLLNRSFWWIEHEGQTLRVRQPTPKLVSDSFDFLLACLLDGQGLQFVP 242

Query: 246 DYIVK---DNPNLVRIMEDVITP----SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +          LV +M D           V+  Y    +NT K++AF   +    +
Sbjct: 243 TWSAAPYLARGELVEVMPDYWRSLSAFGPWVHVLYLPHRRNTRKVQAFIALLHAHLK 299


>gi|115361190|ref|YP_778327.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286518|gb|ABI91993.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 309

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 119/298 (39%), Gaps = 11/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F   AR  SF+ AA +L+++ +++ + +  LE  +G  LF R   G   L  TE
Sbjct: 7   LNALRAFEASARHQSFSAAAVELNVTPAAVGQLVRTLEDWLGTPLFLRSTSGRARLVPTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + +L      LQE S   SG L +  +       L   +  F   +PD
Sbjct: 67  MAERALPDIRAGFDRLTLGLERLQEIST--SGVLTVTVSPAFAAKWLLPRIDRFQAAWPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L  ++K +D      D  +R       S L   KL+   ++   +P  L+      
Sbjct: 125 TDVRLDTNHKSVDFVAQRIDIGVRYGMG-SWSGLKADKLMDEEVYPVCSPELLRQHWRLR 183

Query: 182 SIQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++ +  LI             +            P    +Q+N+  +++Q  + G G
Sbjct: 184 KPADIVRETLIHDLSMDGHAGFPTWEVWMKKAGVTNAPPTRGMQINNSAAVLQAAIEGHG 243

Query: 241 IALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IAL    + +D+     LVR+  D+ +      Y  Y     +  +L AFR+++  +A
Sbjct: 244 IALARSVMARDDLASGRLVRLFPDISVASELAYYVVYRPECASLPRLVAFRDWLLAEA 301


>gi|157370197|ref|YP_001478186.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321961|gb|ABV41058.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 310

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 128/295 (43%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  VA+ G F+ A+  L + +S +S ++  LE  +G+ LF R  R + LTE G
Sbjct: 8   DLNDLYYFAQVAQYGGFSAASRALDIPKSKLSARVLALENRLGVLLFQRTTRRVKLTETG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S L R      ++ E  Q  + +S  +PSG +R++        LL   L  F+   P IQ
Sbjct: 68  SLLLRHAQVAINEAEIAQELIDQSRAEPSGLVRVSCPKLAADVLLSPCLPAFMAANPGIQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL+ ++   D   D  D A+RLR+    S  +I R+L        A+P YL        
Sbjct: 128 VQLLANDNRFDPVTDKIDVALRLRQRKDMSEGMIARELGQSVRILVASPQYLAQHPSLTD 187

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L +H L+T  D+  +   D        R +       L  + +  +        GIA
Sbjct: 188 PQQLSEHALLTLVDVSEQQTWDLEGPDGEKRAVRV--RPRLMCSEWGILRGALYQHLGIA 245

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLPD           LVR++         ++  +P        ++A  +F+ ++ 
Sbjct: 246 LLPDITCHQALMQGELVRVLPQWACAPLIMHAVFPTRRGMLPSVRALVDFLAIQV 300


>gi|90578325|ref|ZP_01234136.1| transcriptional regulators, LysR family protein [Vibrio angustum
           S14]
 gi|90441411|gb|EAS66591.1| transcriptional regulators, LysR family protein [Vibrio angustum
           S14]
          Length = 312

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 127/288 (44%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ + +SG+FT AA +L +S S +S+Q+  LE E+ +KL  R  R  TLT++G + 
Sbjct: 8   RMTIFHTLVKSGNFTIAAHKLGVSTSHVSKQLGLLEAELQVKLVQRTTRSFTLTDEGIEY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   +      +     + SG LR+  +   G   +   ++     +PD+ +++
Sbjct: 68  AKYCEQLVSAVLDADAMMANIRDEVSGTLRLGLSQSFGTMHIIPAIEHLRRQFPDLHVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   ++  +  D  I   + I     + ++L        A+P YL +   P    +L
Sbjct: 128 SLFDHRANMVDEGLDLWITNIENIP-EGYVAQRLADTRFIVAASPEYLIHHPAPNHPSDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + + +   + +    W    D+      +S   +V+   ++   CV G GIA L 
Sbjct: 187 QDHNCLVYQN---RQVNHGTWSFLRDQEGLCVTVSGNYRVDLAEAVRDACVSGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNF 289
            Y++ D      L++++ D         Y  YP       K+ A  +F
Sbjct: 244 TYLLTDEFKTGKLIQLLNDWEANQDMHFYAVYPSRKHLPKKIVAAISF 291


>gi|15964043|ref|NP_384396.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307301188|ref|ZP_07580950.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307321089|ref|ZP_07600494.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15073219|emb|CAC41727.1| Putative transcription regulator [Sinorhizobium meliloti 1021]
 gi|306893261|gb|EFN24042.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306903644|gb|EFN34231.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 296

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 118/288 (40%), Gaps = 5/288 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   VA  GSF  AA++L ++ S++S  +  LE  +G++L  R  R +  TE+G 
Sbjct: 6   LSQLAVLSAVAAHGSFRGAAKELGIAPSAVSHAVGSLEASLGVRLLARTTRSVAATEEGK 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L          +        E+  +P+GKLRI         +L   L +FL  YPD  +
Sbjct: 66  RLLERLRPALDDIAEALQRAAEARDRPAGKLRITAPRFAADLILAPRLGDFLGRYPDTVL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  ++   +I  +  D  IRL + +++  +  +    +     AAP Y +  + P   +
Sbjct: 126 EIANEDGFTNIVEEGYDAGIRLGESLEADMVAVKVGPELKSAVVAAPSYFERFQRPRHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I                      +       L +     I++    G+G+A L
Sbjct: 186 DLAGHRCIRRRFSNGTIYRWE--FEKEGEELTVSVNGPLILGEDRPIIEAATGGAGLAYL 243

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +  V        LVR++ED   P    +  YP        L+AF +F
Sbjct: 244 FEPRVSGYVAEGKLVRVLEDWCAPYAGPFLYYPTRRLMRPALRAFIDF 291


>gi|120600264|ref|YP_964838.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120560357|gb|ABM26284.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
 gi|319425041|gb|ADV53115.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 329

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 133/295 (45%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F+ +A +GS   AA+ L+L +S++SR++  LE E+ IKLF+R +R +TLT  
Sbjct: 1   MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +  +  +  +L+ T  E+     + SG LRI         +L   +  F+ ++P +
Sbjct: 61  GSHFYLRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I   + +D+     D A  +   + +  L+ R + T  +  YA+P YL     P +
Sbjct: 121 TVEVISSAESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPEYLAAHGIPKT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QE++ HN+  F     K   +      +              NS    +++ + G GI 
Sbjct: 181 PQEIESHNVSLFRLSNGKIFNEL----WIGLEEEVRVRGNFCSNSVEVAVEFALQGRGIV 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P  +V    +   LV ++ ++       +  YP     +   + F +FI  + 
Sbjct: 237 YAPTEVVAEFVETGELVTLLPEIDAHQGECFLAYPSRRYVSLASRRFIDFIMQEL 291


>gi|167898351|ref|ZP_02485752.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
          Length = 303

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+
Sbjct: 1   MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   LE  +   + +   P G LR+     L +  +   L +FL  YP 
Sbjct: 61  DGEAYYRRCVRLIADLEEAEGAFRAA--APRGLLRVNLQGTLARYFVVPALPDFLARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IRLHIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            +  L  H  + +  +     +      TVD  + E R+ + + V          V G G
Sbjct: 178 ELAALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++  +
Sbjct: 236 IVQVPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRER 291


>gi|107025529|ref|YP_623040.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|170737440|ref|YP_001778700.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105894903|gb|ABF78067.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|169819628|gb|ACA94210.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 364

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 138/301 (45%), Gaps = 7/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + +F  + R GSFT AA+ L +S  + SR +  LE  +G+ L  R  R + LT
Sbjct: 1   MEITLQAMSIFTYIVRVGSFTAAAKLLGISAGTASRLVRNLENHLGVTLLQRSTRCVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G++       V  ++E  +  L  +     G+L +    ++   +L   + EF L +P
Sbjct: 61  TEGAQYFEHCERVLGEIEEVKAHLAGARDVARGRLSVDIDQEIAHTVL-PLIPEFRLTFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L +      +     DCAI +  P+  SSL  R++   +    A+P YL     P
Sbjct: 120 EVELRLEIGGDPGGLVEHGIDCAIAVG-PLPDSSLRGRRIGDFNAVTVASPAYLSRRGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +LD+H++I +       + DF +       +       + V+   S +QY V G G
Sbjct: 179 HELGDLDRHDIIHYSPRRFGPVRDFRYCVD-GGEVSLKFPERISVSDARSAVQYAVEGIG 237

Query: 241 IALL-PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA +    +V +  N  LV ++ +    S  ++  Y +       ++AF +++ ++ R W
Sbjct: 238 IAQVCGRMVVNEIANGRLVSLLAENRPTSLQIFALYVDQRYIPRSIRAFIDWLEIQLR-W 296

Query: 298 K 298
           +
Sbjct: 297 R 297


>gi|169244307|gb|ACA50465.1| LysR family regulatory protein [Pseudomonas fluorescens]
          Length = 310

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 7/286 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
             F  VA++GSF  AAEQL +++S I+ ++  LET +   LF+R  R + L++ G    +
Sbjct: 8   EAFVRVAQTGSFAKAAEQLGVTRSVITHRVQQLETFINSPLFHRSTRHVRLSDIGEAYFQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +++         +++      +G+LR+        + L   L +F  L+P+I+  +++
Sbjct: 68  ECADMVAGFHGLTEKMRHQRSNLTGQLRVQVLQGFAVDHLGPMLAKFTALHPEIEFDVVV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +D   +  D A ++  P+ +  L+ RKL ++H    A+P YL+    P   Q L  
Sbjct: 128 NDRVVDPIEEGFDIAFQMFPPL-AERLVVRKLFSVHRVFCASPQYLEERGAPEHPQHLKD 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H++  FG    +    F      +  I       ++ +S   +  Y + G+GI  LP  +
Sbjct: 187 HHMALFGGYPSRNRWQF---VRGEECIDLTLHGQVRSSSIHLLRDYALSGAGITCLPTLV 243

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +      LV I+ D    SF     YPE  +   +++   +F+ 
Sbjct: 244 ASNELITGRLVPILTDYRLSSFDFAAVYPETQRRALRVRTLIDFLI 289


>gi|134296657|ref|YP_001120392.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139814|gb|ABO55557.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 300

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 141/300 (47%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD   L    V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MGFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++  +S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYETVAPLLAGIEEAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP++ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+  Y+   
Sbjct: 121 RYPELSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETRVLTCASAAYIARH 179

Query: 178 REPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYC 235
            EPL  ++L   H  +   D  P     + W       +        L VN    ++  C
Sbjct: 180 GEPLHPRDLADGHRCVLIRD--PVTGRPYEWEFHRGNEVVPVDAAGRLTVNDTGGLLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G GIA L +   +D   +  LV+++ +    +F +Y  +  +   + K++ F +F+  
Sbjct: 238 LGGVGIAQLLELYARDVLADGRLVQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFVRE 297


>gi|15596264|ref|NP_249758.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100512|ref|ZP_01364430.1| hypothetical protein PaerPA_01001537 [Pseudomonas aeruginosa PACS2]
 gi|116048996|ref|YP_792202.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892970|ref|YP_002441839.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234203|ref|ZP_04927526.1| hypothetical protein PACG_00038 [Pseudomonas aeruginosa C3719]
 gi|9946982|gb|AAG04456.1|AE004538_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115584217|gb|ABJ10232.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166134|gb|EAZ51645.1| hypothetical protein PACG_00038 [Pseudomonas aeruginosa C3719]
 gi|218773198|emb|CAW29010.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 304

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 135/298 (45%), Gaps = 13/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D L  F V+   GSFT AAE+L  S+  +S++I  LE ++G+ L +R  R L+LT  G
Sbjct: 3   DLDDLAAFAVLHDLGSFTRAAERLGCSKGQLSKRIGVLEQKLGVTLLHRTTRRLSLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +  + E  +  +     +  G++R+   + LG+ L    L++F   +P ++
Sbjct: 63  AALLPEAQALLVQAERARQAVARLQERAEGRVRVTLPVSLGETLFDALLEDFQERHPLLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N   D+  +  D AIR     Q + L+ R L  +     A+P YL    EP   
Sbjct: 123 VELDLYNGLRDLVGEGFDLAIRSGVE-QDARLVARPLFVLQEITCASPAYLARHGEPQRP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL +   +    L         WL      +   R++  L  N Y  + +  + G+GIA
Sbjct: 182 AELAERECL----LNSHYSGHEEWLYHRHHRLERVRVAGFLASNHYSLLKKAALAGTGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LP Y+V D   +  L  ++ D  T S  ++  +P       + +   +++     DW
Sbjct: 238 RLPSYMVHDELGDGRLAWLLRDYQTRSTPMFLVHPFQGGLPRRTQVLADYLL----DW 291


>gi|85710490|ref|ZP_01041554.1| transcriptional regulator, LysR family protein [Erythrobacter sp.
           NAP1]
 gi|85687668|gb|EAQ27673.1| transcriptional regulator, LysR family protein [Erythrobacter sp.
           NAP1]
          Length = 295

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 124/291 (42%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VAR  SF  A  +++ S ++++R ++ LE  +G  LF R  R + LTE G +  
Sbjct: 1   MKVFLEVARRQSFAAAGREMNASPATVTRTVAALEEMIGADLFVRTTRTVRLTEAGERYA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++           +P G L I   +  G+  +   + EF  LYPD+ +QL+
Sbjct: 61  PECERILAEIDAADALAAGVQAQPVGLLAITAPVLFGRLYIAPIVTEFCDLYPDVSVQLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  ++  +  D A+R+   ++ SSL   ++  +      +  YL+    P S Q+L 
Sbjct: 121 LLDRVTNMVDEGFDIALRIGH-LRDSSLKAAQVGHVRRVVTGSAAYLRRNGVPQSPQDLK 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++     +       +W    D          +  N+  + +     G G+  +  Y
Sbjct: 180 SHKIVA----VSSGFSGVDWRFGKDEKAVVRVHPQILCNNNAAAIGMAADGWGLTRVLSY 235

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V        L  ++ED    S  V+  +        K++AF +F   + R
Sbjct: 236 QVGPEVNAGRLRLVLEDYEEASLPVHIVHGGTRNTAAKVRAFVDFAVERLR 286


>gi|269968260|ref|ZP_06182286.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827117|gb|EEZ81425.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 294

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 132/295 (44%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +   V  SG F+ AA+ L +  + +SR +S +E+++GI L  R  R + +TE+G +
Sbjct: 6   DELEILMAVVDSGGFSSAADALGIQVARVSRAVSKVESQLGITLLNRTTRRVEVTEEGHQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +++  + E+      P G+LR+        + L   ++ F   YPDIQ+ 
Sbjct: 66  FVEAVRLGLLQIQQAEEEIITRGELPKGRLRVDAASPFVLHQLVPLIQPFKEAYPDIQLD 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ + +  S+L  + L T  +   A P YL     P ++ +
Sbjct: 126 LTSNEGFVDLLEKRTDVAIRIGR-LSDSTLHAKPLGTSPLFIVATPGYLSKRGFPEAVGD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HNLI F                ++          +  +S  ++ Q  + G+GIA L 
Sbjct: 185 LRSHNLIGFSGAKVLNQWPLRGFEMIE--------PDILSSSGETVRQLVLAGNGIACLS 236

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++VKD+     LV + E     +     V   + ++   + ++ AF +FI  + 
Sbjct: 237 GFMVKDDLDSGRLVALFESEKITNTGREQVNAVFYKSSSVSKRISAFIDFIQPRL 291


>gi|134292806|ref|YP_001116542.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135963|gb|ABO57077.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 323

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 124/294 (42%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE+EVG  L  R  R L++T+
Sbjct: 6   DVNLNRLAIFVAVVDAGSLTAAAERLGLAKTVVSTHMQRLESEVGANLLVRTTRRLSVTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    E         +    G LR++  ID G  ++   +      +P 
Sbjct: 66  AGRAFYDACRDILRAAEAALDAASSDAGPLRGTLRVSVPIDYGALVVAPAIVALRDAHPA 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++LI +++ +D+  D  D AIR+ + +  S+    +L        A+P ++     P 
Sbjct: 126 LDVELIANDRVVDLVADNLDVAIRIGR-LADSNYRAVQLGEYEKWLVASPAFVARYGLPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L     +    L      + +             ++ +  N+  +     + G G 
Sbjct: 185 DPDALAALPFVMLSTLPRPHTLELD--HARGAHASVRCVAPVVSNTATACRAIALAGGGF 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LL D+ + D+     LVR++    +    ++  YP     + K++AF + +  
Sbjct: 243 GLLTDFSIADDVAAGRLVRLLPAWRSARAGIHAVYPSTRMPSRKVRAFVDAMKA 296


>gi|325168828|ref|YP_004280618.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064551|gb|ADY68240.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 299

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 121/296 (40%), Gaps = 5/296 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +L     VAR G F  AA +L +S S++S  I+ LE  + ++LF R  R ++L+
Sbjct: 1   MRASLIELEAVAGVARHGGFRAAARELGMSSSALSHAIAALEERLAVRLFNRTTRSVSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +     +     LE     + E S +PSG+LR+       + LLQ  + E+   YP
Sbjct: 61  AAGEQFLSEIAPALQTLEKAIENVGEHSDRPSGRLRLNMAPGAARILLQPLILEYSRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I+++ +N  +D+     D  IRL + I    +    +  +      +P Y     + 
Sbjct: 121 DVDIEIVTENALVDVIGKGFDAGIRLAEAISPDMVAVPIIPKMRSFVVGSPRYFDGRSKL 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +   +L +H  I       +                      L  +    I++  + G G
Sbjct: 181 VVPADLARHVCIQMRMTSGRLYRWE--FEKYGETHLIDVSGHLTFDGSDLILEAALAGFG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A L ++ +  +    +L+ ++ED       +   + +      KL+AF   I  +
Sbjct: 239 LAYLGEHALAPHIASGDLIPVLEDWSPEYPGLSLYFSQRRHMPAKLRAFIELIRER 294


>gi|289668202|ref|ZP_06489277.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 275

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 119/264 (45%), Gaps = 7/264 (2%)

Query: 35  SRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGK 94
           S+++  LE E+G++L +R  R L  T +G +L      +   L+    +L+ES+    G 
Sbjct: 5   SQRLKRLERELGVRLLHRTTRRLHPTVEGQRLAERGRVLVEDLDALAEDLRESAHDVGGV 64

Query: 95  LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSS 154
           LR+  +   G+  +   L EF   +P ++I   L +  +D+     D AIR+  P++ S 
Sbjct: 65  LRMTMSASFGRQYVSPLLPEFQARHPRLRISAHLSDDLVDLVKQGFDLAIRIG-PLEDSG 123

Query: 155 LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP 214
           L+ R++        A+P YL+    P +  EL +H  +    +     +D   L T D  
Sbjct: 124 LVARRIADNRRTLAASPAYLQRHGTPRTPDELAQHAGVLL--MGRDGRQDVWTLQTPDGG 181

Query: 215 IGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVY 270
           +   R+ S  + N    +    V G GIA+   + + D   +  LV +M D   P+  + 
Sbjct: 182 LVRVRMQSRFESNFGELVRDAVVAGQGIAVHSYWHIADELRSGRLVEVMRDYPPPTSHIS 241

Query: 271 FCYPEALKNTGKLKAFRNFIFLKA 294
              P       +++AF +F+  + 
Sbjct: 242 AVTPARQLQPPRVRAFVDFLLERL 265


>gi|182677459|ref|YP_001831605.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633342|gb|ACB94116.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 300

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 124/297 (41%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L  F  VA  GSF  A+ QL  S +++SR ++ LE  +G +L  R  R + LT+
Sbjct: 1   MDRLDNLSTFVAVAEQGSFIAASRQLGRSTTAVSRAVAVLEDVLGTQLLTRTTRAVALTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +       +    + +  PSG + I      G+  +   ++ F+  + +
Sbjct: 61  AGQRTLEQARRILADYAQLRDA-ADGNATPSGLITITAPEMFGRLHVLPLVESFMAAHSN 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L+L N+ + +  +  D  +R+   +  SSL   +L ++     A+P YL     PL
Sbjct: 120 VEISLLLLNRMVSLIDEGVDLGVRIAH-LSDSSLRAIRLGSVRQVLCASPDYLAMAGTPL 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H +I      P          +   P        L VNS  + ++    G+GI
Sbjct: 179 HPKDLANHRVIAIMGARPLPFRWR--FRSSTNPRSVLVKPQLVVNSVQAALEAASRGAGI 236

Query: 242 ALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y    +++   L R++     PS  ++  YP       +++ F +      R
Sbjct: 237 TRVLSYQSAPLEEIGALRRLLIAHEPPSIPIHLVYPVGRYLPSRIRMFIDHAVAALR 293


>gi|295689813|ref|YP_003593506.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295431716|gb|ADG10888.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 304

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 133/299 (44%), Gaps = 14/299 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD   L    V   V   G F  AAE + L+ S +SR I+ LE++VG +LF RH R +
Sbjct: 1   MVFDARLLSGVGVMAAVVEHGGFARAAEVVGLTPSGVSRAIARLESQVGARLFDRHPRKV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G++ H   + +   +          S +  G+L+++      + +L   L E L 
Sbjct: 61  ALTQAGARFHAEVAPLLAAIGEAAETAAADSAQVRGRLKLSVDPWFARIVLAPRLPELLA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP++   L + N   D+     D AIR   P+  + LI RKL+   +   AAP YL+  
Sbjct: 121 RYPELSFDLRVTNAFEDMLGGGVDIAIRFGPPL-GAGLIARKLLETRVLTVAAPAYLERR 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCV 236
             P    ++  H+ I F D  P+    F W         E  + S L ++   + +  C 
Sbjct: 180 PRPREPADIAGHHAILFRD--PQSRRPFTWEFQRGGKAVEVSVTSRLMLDDPSAALAACE 237

Query: 237 LGSGIAL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GSG+       L  ++  +   LV ++++     F +Y  Y       GK++ F +F+
Sbjct: 238 AGSGLFQSFELGLESWL--EGGRLVTVLDEWAEERFPLYAYYASRHHLPGKVRVFLDFL 294


>gi|293394565|ref|ZP_06638860.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422925|gb|EFE96159.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 320

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 129/293 (44%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      LRVF +VAR   F  AAE++ +S + IS++I+ LE  + + L +R  R + +T
Sbjct: 12  MPL-LSDLRVFVLVARRAGFAAAAEEMGVSPAFISKRIALLEKALSVSLLHRTTRRVAIT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +++     + + ++    E+     +P G LRI ++    +  +   L      YP
Sbjct: 71  EDGERIYEWAQRILNDVDHMMDEVSTIRQEPQGTLRIVSSHGFSRRFIAPALSVLATQYP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L + ++ +D+  +  D  IR+   I + +LI RKL        A+P YL     P
Sbjct: 131 RLELRLDVSDRLVDLVSEGFDLDIRVGDDI-APNLIARKLADNRRILCASPAYLARHGMP 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ EL     +   +           L              L  N    + Q+C+ G G
Sbjct: 190 KTLNELSGRACLVIKERDMPFGIWR--LQGPGGEETIKVTGALASNHGEIVHQWCLDGQG 247

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +AL   + V++   +  LV I+ D    S  ++  Y   L  + K++    F+
Sbjct: 248 VALRSYWDVQENIASGKLVHILSDYYQ-SANIWAVYVSRLATSAKVRVTVEFL 299


>gi|90413504|ref|ZP_01221495.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90325436|gb|EAS41919.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 302

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V+  +     ++ E      G L I+         L   L +F   +P+I +
Sbjct: 68  SYFLDIKDVFSAISEATDKVLERGA--KGALTISLPPSFAIQWLVPRLADFNEQHPEIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +    + L   KL   ++    +P  L   +   S+ 
Sbjct: 126 RIKAVDLDEGSLTDDVDVAIYYGRG-NWTGLRADKLYQEYLLPVCSPMLLTGIKPLRSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          E  N++   +          +  +    ++Q  V G GIAL 
Sbjct: 185 DLKLHTLLH----DTSRKEWKNYVRHYELSDINVNQGPI-FSHSTMVLQAAVHGQGIALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   D   LV   ++++      Y    E    TG+++AFR+++  KA
Sbjct: 240 NNVLAQPELDAGRLVCPFDEILMSKNAFYLVCQERQAETGRIQAFRDWVLAKA 292


>gi|154244831|ref|YP_001415789.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158916|gb|ABS66132.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 316

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 141/298 (47%), Gaps = 8/298 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DW+ L+ F  V R+G  T AA+ + +  S++SR+I+GLE  +  +LF R   G   T 
Sbjct: 17  DLDWNDLQAFLAVVRAGRLTAAAQAMRVDHSTLSRRITGLEAALKTRLFERRPAGYVPTA 76

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      V   +   + +L +  +  +G +RI T    G   L   +  F   + +
Sbjct: 77  AGERLVAEAEAVESIVIGMRAKLTDQVLGLAGSVRIGTPEGFGTYFLTPQMIHFCARHRE 136

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L+ + + + +S   AD  I + +P +   L   +L    M  YA+ HYL       
Sbjct: 137 LQVELVANPRTVSLSKREADIGIMMARP-EEGRLHATRLTDYEMGLYASRHYLAQHAPIA 195

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           S  ++ +H  I +  DL+P     +  +A +D+ +       +++++ ++ +     G G
Sbjct: 196 SRADIRQHAFIGYIDDLLPTAAHGY--VAELDKALN----PQMRMSNIITQLVAATNGGG 249

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + +LP ++   + +LVR++ + I  + + +      ++   +++A  +FI     + +
Sbjct: 250 LCMLPCFMAGTSADLVRLLPEEIAITRSYWLVIHSDVRELARVRAVIDFIAETVAEQR 307


>gi|325168361|ref|YP_004280151.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064084|gb|ADY67773.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 303

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 127/298 (42%), Gaps = 7/298 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L VF VVAR  SFT AA +L +SQ+++S  ++ LE  VG+ L  R  R +  TE G 
Sbjct: 6   LRDLAVFEVVARLQSFTKAASELGISQAALSYAMTQLENRVGVALLARTTRNVAATEAGL 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L          +E     LQ+     +G +R+ T       L++ NL  FL  YP +++
Sbjct: 66  RLLETLRPALQNIEVELQGLQDMRSSVAGTVRLTTVQVAYDALIRPNLPGFLSTYPHVRL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN-CREPLSI 183
           ++ +++   D+     D  IR    ++   +      +      A+P YL      PL  
Sbjct: 126 EVSVNDSLADLVSLSFDGGIRFGSLVEKDMVAVSLSKSSPTVIVASPDYLDRSKGRPLDP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++  H  I +          F+W L   +  +       L +++  +I    + G G+A
Sbjct: 186 ADMQDHQCINY--RFAGSGRLFHWPLEKKEVRLDVRPPGQLILDNGEAIRAAALDGLGLA 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            L +  V ++     L R++ D + P       YP     +   +A+ ++I    RD+
Sbjct: 244 FLFEAQVAEDIAAGRLERVLVDWVKPLPGFSLFYPNRRHVSPAFRAWIDYIKGTNRDY 301


>gi|317405038|gb|EFV85388.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 299

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 131/299 (43%), Gaps = 9/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  V ++ SF+ AA  L L +SS++  I  LE  +G  L  R  R L+LTE
Sbjct: 1   MDKLQAMTTFVRVVQAQSFSKAAATLALPRSSVTTTIKQLEALLGTPLLRRTTRSLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++ +     +  ++   +  L   +  P G++R+     +G+ L+   L+EF   YPD
Sbjct: 61  AGARYYAACQAILAQIAEAEHALAADAQTPRGRVRVDMPGAIGRALVVPRLREFEARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L L+++ +D+  +  DCAIR    +  S+L+ R L  +     A+P YL    EP 
Sbjct: 121 IELVLGLNDRPLDLVHEGIDCAIRSGA-LADSTLVARPLGRLSWLTCASPLYLARFGEPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
           S+  L  H ++ +  L        +W   VD   +         VN   + +   + G G
Sbjct: 180 SVAALAAHRVVNY--LSNASGRPLDWRFRVDGEDVALALPGRYAVNETEAYLHCGLEGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  L +        +  L  ++         +   YP+A   T  +K F  ++   AR 
Sbjct: 238 LIQLSELAAGIYLRSGRLREVLAQARCAPVPIAIVYPQARA-TAAVKTFVEWVITIARQ 295


>gi|261822616|ref|YP_003260722.1| DNA-binding transcriptional activator GcvA [Pectobacterium wasabiae
           WPP163]
 gi|261606629|gb|ACX89115.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 307

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 126/293 (43%), Gaps = 12/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSSLNDATRKLQSRSA--KGALTVSLLPSFAIHWLVPRLSSFNSDYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D D   D  D AI   +      L   KL   ++    +P  L       +  
Sbjct: 126 RIQAVDRDEDRLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPVLLTGNHPLKTPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   D   +    +     V   + +  I     +    ++Q  + G G+AL 
Sbjct: 185 DLVAHTLLH--DASRRDWLSYTRQLGVQINVQQGPI----FSHSAMVLQAAIHGQGVALA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR++I  +A
Sbjct: 239 NNVMAQTELEAGRLVCPFNDVLVSRNAFYLVCHDSQAELGKIAAFRHWILARA 291


>gi|172065431|ref|YP_001816143.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997673|gb|ACB68590.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 308

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 120/299 (40%), Gaps = 11/299 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F   AR  SF+ AA +L+++ +++ + +  LE  +G  LF R   G   L  TE
Sbjct: 7   LNALRAFEASARHQSFSAAAVELNVTPAAVGQLVRTLEDWLGTPLFLRSTSGRARLVPTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + +L      LQE S   SG L +  +       L   +  F   +PD
Sbjct: 67  MAERALPDIRAGFDRLTLGLERLQEIST--SGVLTVTVSPAFAAKWLLPRIDRFQAAWPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L  ++K +D      D  +R       S L   KL+   ++   +P  L+      
Sbjct: 125 TDVRLDTNHKSVDFVAQRIDIGVRYGIG-SWSGLKADKLMDEEVYPVCSPELLRQHWRLR 183

Query: 182 SIQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++ +  LI             +            P    +Q+N+  +++Q  + G G
Sbjct: 184 KPADIVRETLIHDLSMDGHAGFPTWEVWMKKAGVTNAPPTRGMQINNSAAVLQAAIEGHG 243

Query: 241 IALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IAL    + +D+     LVR+  D+ +      Y  Y     +  +L AFR+++  +A+
Sbjct: 244 IALARSVMARDDLASGRLVRLFPDISVASELAYYVVYRPECASLPRLVAFRDWLLAEAQ 302


>gi|307245649|ref|ZP_07527735.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853351|gb|EFM85570.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 295

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 123/290 (42%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  
Sbjct: 1   MDLNNLRLFVAVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTAL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+         L     +      + SG LRI T            + EF   YP +
Sbjct: 61  GLQLYEKVYLSLDNLTQATQDFIGEQQELSGYLRIYTVSACEPIW--AAIAEFQAEYPQV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     ++ +D+  D  D A R+   + + ++I RK++ ++    A P +L     P +
Sbjct: 119 KVHCQATDRVLDLVEDGIDIAFRMGD-LHTENVIARKMMDLNAVLVAHPDFLARHGTPKT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L       +     +  +    L   ++ +    I     N   +I         I 
Sbjct: 178 PQDLTALPFACWA----RAGQKSATLQLGEQAVKIEPI--FTSNDVYAIAHQAKSAHAIC 231

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LPDY+ ++      LV +M D  T ++ ++  YP     +  +K F  F
Sbjct: 232 QLPDYMAQELTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGF 281


>gi|326403340|ref|YP_004283421.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325050201|dbj|BAJ80539.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 298

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 118/293 (40%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+++  VAR GSF+ A  +  +SQ  +SR I+ LE E+G +L  R  R +  TE G
Sbjct: 3   DIAALKLYTRVARLGSFSAAGRESGMSQPQVSRMIAELEQELGARLLSRTTRAVVPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +   L+     ++E      G LR++     G ++    L +F   +  +Q
Sbjct: 63  KAFLLRIEAILAALDEAGQSVREGGEF-HGMLRLSMPTSFGIHVAIPRLADFAARHSRLQ 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L LD++  D+  +  D AIR+     S+S   R++  +     A+P YL     P   
Sbjct: 122 IHLELDDRRQDLVREAVDVAIRIGTLPDSASATARQIALVSRVIVASPAYLAANGAPARP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H +I              W    D      R+      N     +   + G GI 
Sbjct: 182 EDLAGHRIIG----GAAATNPLAWTFERDGERIAARVQPQFTTNENEGAIVAAIAGLGIT 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              ++  +   D+ +LVR++ D       V+  +P         +A  + +  
Sbjct: 238 STGEWDCRRALDDGSLVRLLTDWTMADVPVHAYFPMGRNTRAAARALIDHLRE 290


>gi|332283404|ref|YP_004415315.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330427357|gb|AEC18691.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 310

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 126/294 (42%), Gaps = 5/294 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            ++VF  VA    F  AA  L +S   ++R ++ LE  +G +LF R  R ++LTE G   
Sbjct: 6   AMQVFEKVANESGFAAAARTLDMSPPVVTRLVAELEDHLGTRLFQRTTRKVSLTEAGQAY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   ++         + + +G+LR+ T+  L   ++   L EF   +P I ++L
Sbjct: 66  LARVRQILQDVDEADALAIAHTNQLAGRLRMHTSPVLASYVVAPLLSEFRQRHPGIVVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            ++    D  ++  D  +        ++++ RK+V   +   A+P Y++    P + ++L
Sbjct: 126 EVE-AYRDPPIEDFDITLLGADADFDANIVARKIVESDVILVASPAYVQRSGAPQTPEDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            KH  +              W       + E  I + L  N   ++++  + G+GI  + 
Sbjct: 185 AKHECLRLKRSDGSLRAWRMWCGQKSDQVVELNIDAVLVANHTDTLLRAALDGAGITSIA 244

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             I     +  +LVR++   +T    +Y   P       + + F +++    R+
Sbjct: 245 MNIAAPYLNRGDLVRVLSPWMTGRLAMYAAVPSRKFIPQRSRVFLDYLVEHTRE 298


>gi|261317035|ref|ZP_05956232.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261751705|ref|ZP_05995414.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|265988072|ref|ZP_06100629.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|294851738|ref|ZP_06792411.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|261296258|gb|EEX99754.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261741458|gb|EEY29384.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|264660269|gb|EEZ30530.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|294820327|gb|EFG37326.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
          Length = 294

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 8/288 (2%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V   G+ + A      S +  S +I  LE  +G++LF R  R LT TE G   +    +
Sbjct: 2   RVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRVFYDGALK 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +   ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI+++L L + +
Sbjct: 62  ILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEVRLRLSDHE 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL--DKHN 190
           +DI  +  D A +L   +++S+L  R ++       AAP YL+    P S + L  D+H+
Sbjct: 122 VDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPEALLSDRHH 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            +      P   E +  L T +             +    + Q+ + G GI   P + VK
Sbjct: 181 CLLL--RFPGSKEYYWLLQTPEGLRKFEVTGPYDSDDGDVLTQWALGGRGIINKPLFEVK 238

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 239 EYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 286


>gi|207722572|ref|YP_002253008.1| hypothetical protein RSMK05208 [Ralstonia solanacearum MolK2]
 gi|206587754|emb|CAQ18336.1| hypothetical protein RSMK05208 [Ralstonia solanacearum MolK2]
          Length = 298

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 7/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  V   G+F  AA +L L+ SSIS+ +  LE E+G+ L +R  R L+LTE
Sbjct: 1   MDVLKRMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   + V H     Q ++     +P+G+LRI    +L    L   L++F+  +P 
Sbjct: 61  AGRVYYEECANVVHAAARGQQKVAALRDEPAGELRITAPSELAHQHLVPALRDFIAAHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++  L ++ ID+     D A+R+ + ++ SSL+ R++        AAP YL+    P 
Sbjct: 121 LAVRFELGDEKIDLVEHRVDLAVRIGE-LRDSSLVARQIAWFDELICAAPDYLERTGPPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q L   + + F  L        +        +       L  N   ++    + G G+
Sbjct: 180 TPQALADLDWLIFTPLGEPAF--VHLRNAQGHEVRLRVHGRLATNQAQTLKALALDGHGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A L    +        LV ++ D     F VY   P       K+      +
Sbjct: 238 ARLLKADIGTELAQGRLVPLLPDWRLAGFGVYAITPRRDAQPLKVTRCIEHL 289


>gi|78060381|ref|YP_366956.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964931|gb|ABB06312.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 321

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 135/293 (46%), Gaps = 10/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  VA   SFT AA ++ +S++++S+ +  LE  + +KL YR  R ++LTE+G +L+
Sbjct: 9   LAWFAHVAHHRSFTKAAAEMGVSRANLSQNVKALERRLNVKLLYRTTRDMSLTEEGQRLY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V       +E T   L E+   P+G +R+ T+    + L++ +L+EF   +P + ++L+
Sbjct: 69  DVWYPALVAVERTVDALHEARDAPTGLIRMNTSRVAAKTLIEPHLEEFSTRFPGLGLELV 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+   +I  D  D  IR+ + +    +      ++ M     P Y K   EP +  +L 
Sbjct: 129 MDDGLANIVADGCDVGIRIGESLAPHMVAVPITPSLEMAVVGTPAYFKRHGEPATPADLV 188

Query: 188 KHNLITFGDLIPKCM-EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG------ 240
           +HN + F  +       +F              +  +  N    +++  + G G      
Sbjct: 189 RHNCLRFRQVSGAIHPWEFASPDASGHGFTVEPLGSITTNDDDGMIRAALQGVGLIQHID 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA+ P     D+  LVR+++    P    Y   P   +   K++A  +F+  K
Sbjct: 249 IAVQPHL---DSGALVRVLQPWCKPFAGFYVYAPTRAQMPMKIRALIDFLVEK 298


>gi|270261830|ref|ZP_06190102.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043706|gb|EFA16798.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 314

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 6/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+    +  SGS + AA Q++ SQ +ISR++  LE  +G+KL  R    + LT+ G + +
Sbjct: 17  LQTLVRIVDSGSLSAAAAQMNTSQPTISRRLQVLEQLLGVKLIQRTTHAMKLTDDGERCY 76

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++    +  + EL+    +P G LR+      GQ+ L G L ++L  Y    ++  
Sbjct: 77  QHARKLIEHWQIMEDELRGVRDEPVGVLRVRAPHAFGQDQLIGPLGDYLQRYRQTSVEWT 136

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++   D   +  DCAI +   +   S++   L  +     AAP  L        I +L 
Sbjct: 137 LNDHSPDFIPEGVDCAIHVGA-VTDPSVVAVLLAQVPRIVVAAPELLARHTPLAQIGDLA 195

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +   +         +   +  +  D       +  L  +S  ++ +  + G G+A+L  +
Sbjct: 196 QLPWLALNSFYRNEVTLTHTASGEDYRFDI--VPRLSTDSLYAVRKAALNGVGVAMLSSW 253

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +VK +     L  +M D       +Y  YP A     +L+ F   +  
Sbjct: 254 VVKQDLEQGLLTPLMPDWHAAPLPIYLLYPYASYYPARLRKFLELMKE 301


>gi|126737999|ref|ZP_01753729.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126721392|gb|EBA18096.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 319

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 129/293 (44%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L++F  +   GS + AA  + +S  S S +++ +E  VG  LF R  R + LT  G + 
Sbjct: 7   DLKLFKRIVELGSLSAAAGDMGISPGSASLRLAAMERSVGATLFRRTTRQMHLTPAGEEF 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             + S V + L      +     + SG +++   +DLG+N +  +L  F+   P I + L
Sbjct: 67  LELASNVLNDLAAFDEHISREKRELSGVIKVTAPVDLGRNYIAPSLDRFVESNPGISVDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  ++  D++    D A+R    +  SSL  R++ +      A+P Y+     P   ++L
Sbjct: 127 VCTDRVADLTERGIDIAVRYGA-LMDSSLRIRRISSNKRIPVASPEYVACMGVPEHPKDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIALLP 245
             H+ +    L  K   + +W    +      R++  +  N    + ++ + G GIAL  
Sbjct: 186 AGHDCMLLSSLGDK---NDSWTFVENAKALTLRVNGSRATNDGEVLRRWALEGKGIALKS 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + V ++     LV ++     P+  +   +P   +   K++   + +  + +
Sbjct: 243 AWDVAEDINYGRLVPLLIGFCPPNVDLQLVFPPLARQPTKVRRLADHLVRELK 295


>gi|240137786|ref|YP_002962258.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
 gi|240007755|gb|ACS38981.1| Transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
          Length = 314

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 132/295 (44%), Gaps = 10/295 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A  GS+T AA  L +S S++S+ +  LE  +G+ LF R  R LTLT +G  LH  
Sbjct: 14  AFARSASLGSYTAAAHSLGISPSAVSKSVQRLEQRLGLSLFTRTTRALTLTPEGRDLHER 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              + H+ E  +     +  +P+G L++     +G ++L   L  F   YP + I L L 
Sbjct: 74  ALRLLHEAEEIEQAAVAARSEPAGTLKVTAPFPIGVHVLAPALPRFRERYPKLSIDLRLG 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++  D+  +  D AIR+ + +  S LI R+L    +  +A+P YL+    P    +L +H
Sbjct: 134 DRFADLIEEGIDVAIRVGE-LADSQLITRRLAPHWLCTFASPAYLERRGTPRHPDDLIQH 192

Query: 190 NLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
             + F        +   W   +  R +     + +  +   ++    V G GI + P Y+
Sbjct: 193 ECVNF--RFQSTGQALRWPFRIGGRTVEITPQAGITTDFSDAVAAIVVAGGGIGISPTYV 250

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARDW 297
                    LV ++ +       +   +PE+ +++  +KA   F+   F  A  W
Sbjct: 251 AAPYVARGVLVPVLREFAVERSAIVALWPESRRSSPNVKALLAFLEEVFPAAPGW 305


>gi|254788443|ref|YP_003075872.1| LysR family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237686953|gb|ACR14217.1| transcriptional regulator, LysR family [Teredinibacter turnerae
           T7901]
          Length = 302

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 127/291 (43%), Gaps = 8/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +LR F  V  +G FT AA +LH + +S+S  I  +ET++G +LF R  R L LTEQG
Sbjct: 7   TLAELRQFVAVVETGGFTAAAHRLHQTTASVSLAIKRMETQLGARLFERSTRNLQLTEQG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ ++V+      L+     L+ S     G L IA   DL   LL   L+EF   +P++ 
Sbjct: 67  AQFYQVSKRTLSVLQEGVESLRVSQDAVRGPLVIAAPGDLALTLLGRMLREFQHKFPEVA 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L + +    +  +  D A+R   P+  S L+ R+L T      A+P YL     P S+
Sbjct: 127 LDLRVSDSVSGVVGEGIDLALRYG-PLPDSELVARELHTGRRLLCASPDYLNRAGVPRSL 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L +H  + F         D  W    +       ++C L  ++      + + G G+ 
Sbjct: 186 ADLSEHRCLCFR---RSGRADTQWQFMQEGERFAVTVNCALVTDNSAVARDWALAGEGLV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 V D+     L  ++ D       ++  Y  A     +L+    F+
Sbjct: 243 YKSGLDVYDDIAAGRLRTVLTDYQGIQTPLFAVYAGAQYQPRRLRELLAFL 293


>gi|229588867|ref|YP_002870986.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360733|emb|CAY47591.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 302

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 142/301 (47%), Gaps = 14/301 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS + D L  F V+  +GSFT AAEQL  S+  +S++IS LE +  + L +R  R L+LT
Sbjct: 1   MS-EMDDLAAFAVLIEAGSFTLAAEQLGCSKGQLSKRISQLEAQFSVVLLHRTTRKLSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+ L      +  +++  +  L       +G +R+   + LG+    G L EF   YP
Sbjct: 60  AAGAALLPQAQALVVQVDRARQALARLKDDLAGPVRMTVPVSLGETFFDGLLLEFSKQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +QI+L L+N+  D++ D  D  +R    I++  L+ + L+  H    A+P YL++  EP
Sbjct: 120 QVQIELELNNRYRDLARDGFDLGVRSGA-IENERLVAKPLLAWHEMTCASPAYLEHYGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +  +L  H  +       +      WL      +   R+S     N Y  + +  ++G+
Sbjct: 179 ETPADLAAHICLLNSHYSGR----EEWLYHQQHELLRVRVSGTFASNHYNLLKKAALVGA 234

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA LP Y++     +  L  ++ D  T S  +Y  +P       + +   +++     D
Sbjct: 235 GIARLPSYVLPAELADGRLRWLLRDYQTRSMPMYLVHPYQGGLPRRTQVLADYLV----D 290

Query: 297 W 297
           W
Sbjct: 291 W 291


>gi|227114039|ref|ZP_03827695.1| putative DNA-binding transcriptional regulator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 305

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 122/288 (42%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSFT AA QL +S S++S+ ++ LE E+ IKL  R  R + LTE G   +
Sbjct: 1   MSVFARVVEFGSFTAAARQLQMSVSAVSQTVTKLEDELQIKLLNRSTRSIGLTEAGKIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + H+      +L   +  P G LRI ++  + QN+L       L  YP + + L+
Sbjct: 61  HGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLSTMTAAMLKEYPGLSVNLV 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D+  D  D  IR+   +Q SSL  ++L ++ M   AA  YL     P    ++ 
Sbjct: 121 TGIPAPDLIADGLDIVIRVGA-LQDSSLFSKRLGSMPMVVCAAKSYLVQHGTPDKPADMV 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD- 246
             + + +         +F  +A                N   +++++   G+GIA +P  
Sbjct: 180 NFSWLEYSVRPDS---EFELIAPEGISTRVTPQGRFVTNDPQTLVRWLKTGAGIAYVPLM 236

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++V +     +  +     +    VY  Y        K++   N++  
Sbjct: 237 WVVDEINRGEIEILFNRYHSDPRPVYALYTRKDNLPLKVQVCINYMTE 284


>gi|330818430|ref|YP_004362135.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327370823|gb|AEA62179.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 358

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 123/300 (41%), Gaps = 16/300 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SF+ AA++L ++  +IS Q+  LE E+G+ LF RH + L LTE G 
Sbjct: 9   LNALRAFEAAARHESFSRAADELFVTHGAISHQVRALEEELGVPLFVRHGKRLALTESGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R        L     +++ +      +L +++        +   +  F+  +PDI +
Sbjct: 69  RYARQVRAALTILLDATQDVRAADRGN--RLVVSSLQSFAARWITPRIGSFIDRHPDIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N   D S D  D AIR         L   KL         AP  L     P    
Sbjct: 127 ELQSTNSLTDFSRDDVDIAIRFGNG-HYPGLHVEKLFDEMFFPACAPT-LNGGVLPREPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   L T+  P        L       ++Q  + G GIAL+
Sbjct: 185 DLARYPLLRSDDELWRPWFDAAGLETLSEPK-----RGLLFQDSSQLVQAAIDGQGIALV 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA----RDW 297
              +     D   +VR+ +      +  YF    +     +++AFR ++  +     R+W
Sbjct: 240 RRSLAAAELDAGRIVRLFDIDGPSPWHCYFVCLPSRLAAPRVQAFRTWLLAELAHFEREW 299


>gi|134293115|ref|YP_001116851.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136272|gb|ABO57386.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 301

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 134/299 (44%), Gaps = 13/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA QL+ +++++S  I  LE E+G+ L  R  R + LT+ G
Sbjct: 3   SLDRFAVFRAVVETGSFTAAAAQLNQARAAVSFNIKQLEAELGVTLLTRTTRRVELTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E+   + +       G LR+ +T++ G  ++   L  F+  +P ++
Sbjct: 63  ERFYARCVRVLEEAESAIDDARSEHGGMHGVLRVTSTVEYGTMVVAPALHAFMQRHPALR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQR--KLVTIHMHAYAAPHYLKNCREPL 181
           ++L      +D+  +  D AIRL +  Q   L  R   L T  +    AP  L       
Sbjct: 123 VRLETHATQVDLVRERVDVAIRLGRLEQFQDLPYRGACLATYEVRPVIAPSLLAEAGLSQ 182

Query: 182 --SIQELDKHNLITFGDLIP---KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S + L +   +    L       + D +      RP  +PR+    V++   +     
Sbjct: 183 IGSPELLARLPQLGHTRLERIATWTLTDRDGNPHAFRPGAKPRV---VVDNASVLRVLAR 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GSG+ALLP+++V+D+     LV  +     P   VY  YP       K++A+ +F+  
Sbjct: 240 QGSGVALLPEWLVRDDLASGALVDALPGYRFPPQAVYALYPSTAHVPQKVRAWVDFMKA 298


>gi|153832286|ref|ZP_01984953.1| LysR family transcriptional regulator [Vibrio harveyi HY01]
 gi|148871597|gb|EDL70452.1| LysR family transcriptional regulator [Vibrio harveyi HY01]
          Length = 305

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 139/296 (46%), Gaps = 13/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W  +R F  VA  GSFT AAE +  S++++S+ +S LE+ +G++L YR  R L LTE
Sbjct: 3   NLSWRGIRAFIYVAECGSFTSAAEAMGASKANVSQLVSELESSLGVQLLYRTTRQLRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G    R   E   +L+      Q+++ +  G++ + +    +G+ L+   +  F   YP
Sbjct: 63  IGDGYFRKCKEAMLQLDAAAEWAQQTTSEIKGRIHMNSVGGPIGEELIAPLVMSFQSAYP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L      +D+  D  D  +R+ + +  S+LI R+L T+  H  A+P +L+   + 
Sbjct: 123 NVEVELDFSKHRVDLIEDSYDLVLRVGE-MPDSTLIARRLTTLRTHYVASPDFLERHPKI 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  ++L    LI  G +    M++ N    ++   G      ++  +  ++    V G G
Sbjct: 182 LIPEDLKALPLIH-GSVDHWIMKNHNEQRIINVGQG------IKAATGRTMRHAAVSGLG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  L D     +     L+ ++ +    +  +    P       ++K   ++I  +
Sbjct: 235 VTRLTDVYCHADLASGRLIEVLPEWSEKTL-LSLVCPPVKYQLPRVKMLMDWISER 289


>gi|307309080|ref|ZP_07588757.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307320939|ref|ZP_07600347.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306893423|gb|EFN24201.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306900394|gb|EFN31009.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 299

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 122/297 (41%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + + VF  VA  G+F  AA++L +++S++S+ I  LE   GI L  R  R + LT
Sbjct: 1   MTIDLNLVPVFLAVAEEGNFRAAADRLGVTRSAVSQGIRRLEDICGIALVSRTTRSVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++LH   S+   ++ +   E      +PSG LRIA T    Q L    +  F   +P
Sbjct: 61  EAGNRLHETLSQPMAEVRSA-FENVAGDARPSGLLRIAVTSIAEQFLSGPLIASFAETHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I + + +   DI     D  +RL + I+   +             A P Y +    P
Sbjct: 120 GITIDVTVTDDVFDIVAAGFDAGVRLGEVIEQDMVAVPLTKEEREVVVATPRYFELHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL +H  + +          +        P        +  N    +++  + G G
Sbjct: 180 RHPRELVRHRCVGWRPSPSAAPYRWE-FEEDGIPFDVAVEPQITTNDLHLMVRTALAGGG 238

Query: 241 IALLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I    +     YIV+    L+  ++D + P    +  +P       KL+A  + +  
Sbjct: 239 ITFALEETFRPYIVR--GELITALDDYLPPFPGFFLYFPNRRNMAPKLRALIDHVRA 293


>gi|218674394|ref|ZP_03524063.1| LysR family transcriptional regulator [Rhizobium etli GR56]
          Length = 251

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 7/251 (2%)

Query: 46  GIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ 105
           GIKL  R  R  +LT+ G   +     +  ++E  +  + E+   P G+LRI+  I  G 
Sbjct: 1   GIKLLNRTTRRQSLTDSGRIFYEHAKNILAEMEAAEALIAETRSIPRGRLRISAPITFGS 60

Query: 106 NLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM 165
           + L   L E+L  +P++ + L L N+ +D+  +  D A R  + +  S L+ R L  + +
Sbjct: 61  HALAPELPEYLKQHPEVSLDLSLTNRTVDLVEEGFDVAFRTGE-LPDSRLLARGLSPLRL 119

Query: 166 HAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV 225
              AAP YLK+  +    ++L +H  + F     +    F     +   +  P       
Sbjct: 120 VLCAAPAYLKSAEKLNRPEDLQRHECLVFSHTSLRTQWSFEGPHGL---VSVPITGRFST 176

Query: 226 NSYLSIMQYCVLGSGIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           +S  ++    V G G+ L P  +V    +   LVR++ D   P+  ++  Y    + T K
Sbjct: 177 DSGEALRAAAVAGMGVLLQPHELVVREIEAGRLVRLLPDYEPPARPLHALYAPDRRMTPK 236

Query: 283 LKAFRNFIFLK 293
           L++F +F   K
Sbjct: 237 LRSFIDFALKK 247


>gi|307726977|ref|YP_003910190.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587502|gb|ADN60899.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 300

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 120/297 (40%), Gaps = 12/297 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L VF  +A  G+ T AA +L  S  ++SR +  LE E G  L  R  R   LT  G
Sbjct: 5   SLRDLEVFVAIAEEGNLTGAARRLDRSLQAVSRSLQVLEREAGTLLVARTTRQCRLTTPG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    +V   L   + EL E +   SG+LRI      G   +   L  FL  YP + 
Sbjct: 65  EQFYARVKQVLADLAMARAELAEYATTVSGRLRICGPTLFGPRYIAPLLAAFLARYPQLT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L  +  D +   AD  IR+ +    S+L+ R+L TI    +A+P YL+    PL  
Sbjct: 125 ASLDLSEEYDDPATSGADVTIRIGE-TPDSNLVARRLGTIRRVTFASPAYLEARGRPLRP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ +    L    +  +     V+  +        + NS  +I +  V G GI  
Sbjct: 184 ADLKQHDCVVRSALPEASLWRYRSKRGVEEAVQV--RGRFESNSTAAINEAVVSGLGIGR 241

Query: 244 LPDYIVKDNPNLVR------IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + +     LV+      I+ D       +   +    +   + + F  F+  + 
Sbjct: 242 AAYWQI---GELVQQRRVELILTDYELSPLPLQALWLPTRRLPARTRLFVEFLAARL 295


>gi|187919781|ref|YP_001888812.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718219|gb|ACD19442.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 306

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 123/292 (42%), Gaps = 6/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AA +L L+++ +S  +  LE EVG  L  R  R L LTE
Sbjct: 6   DVNLNRLAIFVAVVEAGSLTAAAARLGLAKTMVSTHMQRLEAEVGASLLVRTTRRLGLTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  + ++    E     +   +    G LR+++ ID G   +   L E    +P 
Sbjct: 66  PGRAFYEASVKILRATEDALAAIGGETAPVRGTLRVSSPIDYGSLAVAPVLVELRRTHPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+  ++ +D+  D  D AIRL + +  S+    KL +      A+P +++   +P 
Sbjct: 126 LNVELLCTDRYVDLIADGIDVAIRLGR-LADSNFRAVKLGSFVKWIVASPDFVETWGQPQ 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS 239
           +  EL          L      D            E     + L VN+  +     + G 
Sbjct: 185 TPAELSAMPFCALTVLPRPLTLDLQRNGGTGDGDVESVRCENALLVNTADACRAATLAGG 244

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G  LL D+ +  +     L+R++ +  T   ++   +P       K++A   
Sbjct: 245 GFGLLTDFSIGGDIAAGRLIRLLPEWATEPASIQAIFPPTSHPPRKVRALIE 296


>gi|161503921|ref|YP_001571033.1| hypothetical protein SARI_02011 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865268|gb|ABX21891.1| hypothetical protein SARI_02011 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 303

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 123/297 (41%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +    F  V   G F  A   L+  +S +SR+I+ LE  +G++L  R  R   +T
Sbjct: 2   MKMDLNDFAWFVHVVEEGGFAAAGRALNEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  + +  Q  +    V+P G +++   + L    +   L +F+  YP
Sbjct: 62  EVGQTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           D+ +QL   N+ +D+  +  D AIR+R +P + S L+ R L       +A+P  +     
Sbjct: 122 DVSLQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPDLIARMGS 181

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  EL     ++      K +  +                 +     L++ +  + G 
Sbjct: 182 PSAPAELSHWPGLSLAS--GKHIYRWELYGPQGARAEVHFTPRMITTDMLALREAAMAGV 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+  LP  +VK+      LV ++E        ++  +P        ++A  +F+  +
Sbjct: 240 GLVQLPILMVKEQLAAGELVAVLEAWEPRREVIHAVFPSRRGLLPSVRALVDFLTEE 296


>gi|238783726|ref|ZP_04627746.1| Glycine cleavage system transcriptional activator [Yersinia
           bercovieri ATCC 43970]
 gi|238715439|gb|EEQ07431.1| Glycine cleavage system transcriptional activator [Yersinia
           bercovieri ATCC 43970]
          Length = 298

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 129/295 (43%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 2   NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S    G L ++         L   L  F   YP I ++
Sbjct: 62  YYLDIKEIFTSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 119

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    + L   +L    +    AP  L          +
Sbjct: 120 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPGLLMGEHGLKVPAD 178

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
           L  H L+             +W+A   R +G P+I+  Q    +    ++Q  V G GIA
Sbjct: 179 LAYHTLLH-------DTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIA 230

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+ + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 231 LVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 285


>gi|89072177|ref|ZP_01158773.1| transcriptional regulators, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89052278|gb|EAR57729.1| transcriptional regulators, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 312

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 129/288 (44%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ + +SG+FT+AA +L +S S +S+Q+  LETE+ +KL  R  R  TLT++G + 
Sbjct: 8   RMTIFHTLVKSGNFTNAAHKLGVSTSHVSKQLGLLETELQVKLVQRTTRSFTLTDEGIEY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   ++   +      +     + SG LR+  +   G   +   ++     +PD+ +++
Sbjct: 68  AKYCEQLVSAVLDADAMMANIRDEVSGTLRLGLSQSFGTMHIIPAIEHLRRQFPDLHVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   ++  +  D  I   + I     + ++L        A+P YL +   P    +L
Sbjct: 128 SLFDHRANMVDEGLDLWITNFENIP-EGYVAQRLADTRFIVAASPEYLIHHSVPTHPSDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + + +   + +    W    D+      +S   +V+   ++   CV G GIA L 
Sbjct: 187 QNHNCLVYQN---RQVNHGTWSFLRDQEGLCVTVSGNYRVDLAEAVRDACVSGWGIAYLA 243

Query: 246 DYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNF 289
            Y++ D      L++++ D         Y  YP       K+ +  +F
Sbjct: 244 TYLLTDEFKTGKLIQLLNDWEANQDMHFYVVYPSRKHLPKKIVSAISF 291


>gi|330958168|gb|EGH58428.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 301

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 123/297 (41%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  +A   SF   A Q  LS ++++R +S LE+ +GI L  R  R + LTE
Sbjct: 1   MDRIQEMTLFASLAEHTSFAAVARQSGLSTATVTRAVSSLESRLGILLVVRTTRNMRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L   +         PSG L +      G   +   L  FL  +P 
Sbjct: 61  AGQRFAVDCRRLLGDLAEAENAAGGLHALPSGSLTVTAPQMFGALHVVPVLTSFLDQHPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ IL ++ + +  +  D A+R+   +  SSLI     ++     A+P YL     P 
Sbjct: 121 VDVRAILVDRVVSMLDEGIDVAVRIG-TLPDSSLIAIPTGSVRRMVCASPAYLAKHGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H+ I+           F      +        S L + SY + +   + G G+
Sbjct: 180 HPDDLRRHSTISTTTFERPPHWLFR---IANEDYSVDVGSRLSLTSYQAAIGAALQGGGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +P Y +++   +  L  +++        V+  Y E  + + K++AF +F     R
Sbjct: 237 TQVPFYQIREHLQDGRLESVLDAFEITPEPVHVVYLEGRRGSSKVRAFVDFCVSALR 293


>gi|86750879|ref|YP_487375.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573907|gb|ABD08464.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 301

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ + V   V  +GS +  A +LH   ++ISR++  LE  +G++L  R +RGLTLTE
Sbjct: 1   MDRFEAMSVLLAVVDAGSLSAGARRLHAPLATISRKVGELEKHLGVRLVRRTSRGLTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G      +  +  +LET + +         G L +   +  G+  L     +FL   P+
Sbjct: 61  EGRAFVAASRRILEELETAERQAAGDYGALRGALHVTAPVAFGERHLLPIALDFLKQQPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L ++ + ++    D A+R+   +  S+LI  ++ T+     A+P YL     P 
Sbjct: 121 INLRLTLADQQVSLADAQIDVALRIGH-LADSALIGTRVGTVRRVLCASPDYLARRGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ I+F          +   +        P+   L VN+  + +Q  + G GI
Sbjct: 180 RPDDLAGHDGISFQGFATAPEWRYRRDSAAFAVDPRPK---LAVNTTEAAIQSALAGVGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y V D      L  ++ D       V   +  A+    K+++F ++   + R
Sbjct: 237 IRVLSYQVSDQLRAGQLRELLPDFAPEPLPVNLIHAPAVPLPPKVRSFLDWTAPRLR 293


>gi|50119955|ref|YP_049122.1| DNA-binding transcriptional activator GcvA [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610481|emb|CAG73926.1| glycine cleavage system transcriptional activator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 307

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 127/295 (43%), Gaps = 12/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSSLNDATRKLQSRSA--KGALTVSLLPSFAIHWLVPRLSSFNSDYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D D   D  D AI   +      L   KL   ++    +P  L       +  
Sbjct: 126 RIQAVDRDEDRLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPVLLTGNHPLKTPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   D   +    +     V   + +  I     +    ++Q  + G G+AL 
Sbjct: 185 DLVAHTLLH--DASRRDWLSYTRQLGVQINVQQGPI----FSHSAMVLQAAIHGQGVALA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            + + +   +   LV    DV+      Y    ++    GK+ AFR++I  +A +
Sbjct: 239 NNVMAQTELEAGRLVCPFNDVLVSRNAFYLVCHDSQAELGKIAAFRHWILARAAN 293


>gi|300716514|ref|YP_003741317.1| regulatory protein, LysR domain [Erwinia billingiae Eb661]
 gi|299062350|emb|CAX59467.1| regulatory protein, LysR domain [Erwinia billingiae Eb661]
          Length = 300

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 121/290 (41%), Gaps = 10/290 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+L VF  V + GS   AA +L  S  +I+R ++ LE+     L  R  R L+ T 
Sbjct: 1   MDKLDELEVFVAVVQQGSLAGAARKLRRSPPAITRALASLESRFDASLIERTTRHLSPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      + +       +   +  + +G LR+   +  G+  +   + +FL  YPD
Sbjct: 61  AGLVLFERAKTLLNDYTLAIED--AARTQLTGLLRVTAPVQFGRKHIAPLVMQFLDSYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI+L+L++   D+     D A+R+ + ++ SSL+  ++ ++     A+P YL     P 
Sbjct: 119 IQIELLLNDSYQDLIEQGLDMAVRIGQ-LRDSSLVAVEVGSVQRIVLASPAYLATAGTPT 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H LI    +       F      +R   +P    + VN   + +     G GI
Sbjct: 178 SPGDLVNHLLIAGTSISSSREWRFGPPENQERVRIQP---AMMVNEVETQLIAARAGKGI 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             L  Y   +      L  ++ D   P   V            +++AF +
Sbjct: 235 TRLLSYQAFEELQQGLLCEVLADYRPPGLPVQLVTQNLKYMPARVRAFWD 284


>gi|295700211|ref|YP_003608104.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439424|gb|ADG18593.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 317

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 126/298 (42%), Gaps = 11/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F     +GSFT AA  L  + S++S+ I+ LE  +G++LF R  R   L+ +G
Sbjct: 5   NLNGLAAFVRAVETGSFTSAAHSLGTTPSAVSKSIARLEKRLGVRLFQRSTRAFLLSVEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   + +   LE    E+  S    SG+LR++   +LG+ LL    +  +  +P++ 
Sbjct: 65  QAYYEQVAPLVRGLERA-DEVLRSPATVSGRLRVSLPGELGRLLLDPVTRHLMTKHPELA 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + + ++ +D+  D  D AIR    +  S L    +  + +   AAP YL+    P  I
Sbjct: 124 LDVSVSDRHVDLIRDGFDIAIRAGW-LGDSGLHAHTIAELPLVLVAAPDYLREHGTPRRI 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + +       +    +                  +S  ++    + G GIA 
Sbjct: 183 ADLAAHRHVRYR------LSGRAYPVIFADGTTVAVDGVFDADSGDAMRVAALNGLGIAQ 236

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +    V+D+     L  +++     S  V+  +        + + F +F+  +   WK
Sbjct: 237 ILAIAVRDDLAAGRLCTVLQGHAMASVPVHALHAFGRNIPMRARVFMDFVTAQLVGWK 294


>gi|238897139|ref|YP_002921885.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238549467|dbj|BAH65818.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 304

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 132/295 (44%), Gaps = 6/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +   V   GS + AA  L++  +++SR I  LE+ +G++L  R  R LTLT+ G 
Sbjct: 4   LSAMALLVKVTELGSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTDAGV 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  ++E  + +      +P G+L I+     G+  +   + EF+  YP I++
Sbjct: 64  DYVAAARRILEEVENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPLIRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L +++ D+  D+ D A+R+   +  SS++  +L T+ + A A P  L    EP   +
Sbjct: 124 RLLLSDRNADLVSDHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQRPR 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    +I     +P     F      D+ I  P +  L V +  S      LG G+A L
Sbjct: 183 DLAALPIIRIESPMPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGVARL 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             Y   D   +  L  ++E+V      V+  Y        KL+ F +F     R 
Sbjct: 241 LHYQALDGLRHGELRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDFAAPALRQ 295


>gi|126727891|ref|ZP_01743719.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126702832|gb|EBA01937.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 296

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FDW+K R F V A  GS + AA  L ++Q ++ RQ+ GLE E+GI LF R  RGL LT 
Sbjct: 7   KFDWNKARAFLVTAEEGSLSAAARALGMAQPTLGRQVDGLEQELGIVLFERVGRGLRLTP 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++        +     S    GK+ I+ +      LL   + +  L  P 
Sbjct: 67  SGLELLDHVRDMGEAAGRVSLTALGQSQAIEGKICISASETYAAVLLPPIIAKLRLQEPG 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++++++ N   D+    AD AIR  +P +   L+ +KL       YA P Y++    P 
Sbjct: 127 IKVEIVVANHASDLRRREADIAIRNFRPTE-PDLVAKKLGDAEAVLYATPEYIEKIGNPT 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L + + +               L T+   + +     L   +YL + +    G+G+
Sbjct: 186 KPSDLQRADFVDLD----AGGMMIKGLNTLGLGVTKANFPIL-TENYLVMWELVRQGAGV 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +L  YI   +P +VRI+ D+    F ++      L  + +++   +F+  + +
Sbjct: 241 GILDAYIGDADPTVVRILPDLPPLVFPIWLVAHRELTTSRRIRMVYDFLATELK 294


>gi|167742735|ref|ZP_02415509.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
          Length = 297

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+
Sbjct: 1   MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   LE  +   + +   P G LR+     L +  +   L +FL  YP 
Sbjct: 61  DGEAYYRRCVRLIADLEEAEGAFRAA--APRGLLRVNLQGTLARYFVVPALPDFLARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IRLHIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            +  L  H  + +  +     +      TVD  + E R+ + + V          V G G
Sbjct: 178 ELAALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++  +
Sbjct: 236 IVQVPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRER 291


>gi|197104632|ref|YP_002130009.1| transcriptional regulator,LysR family [Phenylobacterium zucineum
           HLK1]
 gi|196478052|gb|ACG77580.1| transcriptional regulator,LysR family [Phenylobacterium zucineum
           HLK1]
          Length = 308

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 135/296 (45%), Gaps = 11/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+L  F  VA + SFT  A +L +S + +S+ ++ LE  +G +L  R  R ++LT+
Sbjct: 1   MDRLDELAAFVAVADARSFTQGARKLGVSSAQVSKLVARLENRLGARLLNRTTRDVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++    E  +  +++ S  PSG+L+++  +  G+N L   L +F      
Sbjct: 61  TGQAYLERARDLLDGFEALETSVKDQSG-PSGRLKVSAPVSFGRNQLTPALLDFAAGCSA 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++  ++ +++  +  D A+R+   +  SSL+ R+L  + +   A+P YL     P 
Sbjct: 120 VSLDVVFSDRMVNLVEEGFDVAVRIGH-LSDSSLVARRLAAVRLVTCASPDYLARAGTPT 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ +L +H  +    L     +   W         + R+   L  +   +     V G G
Sbjct: 179 TLADLARHEAV----LDTNARDPTVWRFGPQSDTRDVRVHGRLSFSGAEACAAAGVAGFG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +   P + V ++     LV ++ +       V+  YP A     K++AF +F+  +
Sbjct: 235 LIRSPAFAVAEDLRAGRLVPVLCNYEPEVIHVHAVYPHARHLAAKVRAFVDFLAAR 290


>gi|239815940|ref|YP_002944850.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802517|gb|ACS19584.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 304

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 121/293 (41%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  VA  G F  A+  L + +S +SR+++ LE  +G++L  R  R L+LT  G
Sbjct: 3   DLNDMVFFAEVAERGGFAAASRALGIPKSRLSRRVAELEDRLGVQLMQRSTRRLSLTPAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R ++ V    +     + +    P G +R++  I +  + L   L  F+  YP ++
Sbjct: 63  EIFLRHSAAVRDAAQAATEAVAQVHTDPCGTVRLSCPITVAHSGLAQLLPRFMERYPAVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L + N+ +D+  +  D A+R+R  I+ S +L+ + L T      A P  L+      +
Sbjct: 123 VDLRVMNRPVDLIEEGIDIALRVRPAIEDSTTLVAKVLGTSRAVLVARPDLLQRLGPVRT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L++           +   ++                    +  +++    + G G  
Sbjct: 183 PADLERLPTAAMS-ANSEGRSEWRLEGPNGEIHVHVHTPRCVADDLVTLQLVALEGVGAT 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLP Y+ + +     LV+++          +  +P        ++   +F+  
Sbjct: 242 LLPGYMCRADVEAGRLVQVLPGWGPAPVIAHMVFPPRRALVPAVRQLIDFLAE 294


>gi|21233591|ref|NP_639508.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770557|ref|YP_245319.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21115455|gb|AAM43390.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575889|gb|AAY51299.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 303

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 121/288 (42%), Gaps = 5/288 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ L  F  VA   SF  AA ++ L+ SS+S  IS LE  +G++L +R  R ++LTE G
Sbjct: 8   SFNDLAAFTAVATHRSFRRAASEVGLAPSSLSHVISALERNLGVRLLHRTTRSVSLTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L+         ++   +EL +    P+G +RI     + Q LLQ  +   L  YP + 
Sbjct: 68  ARLYAKLVPALQDVDQALLELDDFRGGPTGTVRINAPEVVVQLLLQQVVPHVLARYPALS 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+ + + +DI     D  IR  + +    +           A AAP YL     P + 
Sbjct: 128 VDLVSEGRLVDIVAAGFDAGIRFSESVPQDMVAVPFGGPARFVAVAAPDYLARAGTPDTP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H  I       K           D  I  P    L ++    + +    G GIA 
Sbjct: 188 DALQRHACIRHRMPSGKLYRWEFERRGEDVVIDVP--GRLTLDQIPLMCEAAEGGLGIAY 245

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P+Y V+       LV+++E        +   YP   +    L+A  +
Sbjct: 246 VPEYAVRAALQRGTLVQVLEAWCPAFPGLVLYYPGRRQLPPGLRALID 293


>gi|239996573|ref|ZP_04717097.1| transcriptional regulator, LysR family protein [Alteromonas
           macleodii ATCC 27126]
          Length = 312

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 125/298 (41%), Gaps = 6/298 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   D L V   VA   + T AA  L++  ++ S  +  +E  +G +LF R  R L L+ 
Sbjct: 3   AMLLDDLNVVIKVAEFRNITAAATHLNMRTATASAAVKRVEQALGAELFVRTTRSLRLSS 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      E    L   +  L+  +    G+LR+  + DLG+N++   L +F+ L+  
Sbjct: 63  AGERFLPTCQEAMSMLANAKQNLKGDTGVIEGELRLGLSSDLGRNVIAPWLDDFMDLHDK 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L + +ID   D  D A+R   P   +++   K+  +     A+P Y+ +   P 
Sbjct: 123 ITVKLNLSDSNIDFYRDPVDLALRYGTP-TDANVYGFKICDVPSLLVASPSYISSHGAPE 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  HN + +  L  K   ++        P+          N    + ++ V G GI
Sbjct: 182 KFGDLQTHNGLFY-QLHDKVYNEWE-FFHKGTPLKIKMRGNRTANDGEIVKRWAVAGKGI 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+       D+     LV ++ +       ++   P     T  ++ FR+ +  +  +
Sbjct: 240 AVKSGLDACDDILKGRLVTLLPEYQPKPKQLWLICPSRQSITPAVRLFRDMLKERCAE 297


>gi|172064063|ref|YP_001811714.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996580|gb|ACB67498.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 299

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 123/291 (42%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR  SFT AA +L +SQS++S  I  LET +G++L  R  R +  TE G
Sbjct: 5   NFADLLAFIAVARERSFTRAAARLGVSQSALSHTIRALETRLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     L E   KP+G +RI  T  + + LL   L   L  Y D++
Sbjct: 65  ERLLQNLAPRFDEIEDELSALAELRDKPAGTVRINATDYVIRTLLWPRLSPILRDYRDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D    DI     D  +RL   +    +  R    + M    AP Y      P + 
Sbjct: 125 VEFVTDYGLSDIVAQRFDIGVRLGDQVAKDMIAVRISPDLKMAIVGAPAYFAEREPPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P     + W         + R+   +  N    ++   + G G+A
Sbjct: 185 QDLVAHDCINL--RLPTHGALYAWELARGDDTLQVRVDGQVTFNGTYEMLDAALAGYGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P  +     +   LV +++D        +  Y    +++       + +
Sbjct: 243 YVPAELAAPHVEAGRLVSVLDDWCPTFPGHHLYYASRRQSSRAFALIVDAL 293


>gi|241663443|ref|YP_002981803.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240865470|gb|ACS63131.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 331

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 119/296 (40%), Gaps = 6/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR+   +A +G+ + AA QL    ++ S  +  +ETE+G +LF R  R +  TE G 
Sbjct: 4   LDDLRLLVRIADAGNLSAAARQLGWLPATASAALKRVETELGARLFERTTRSMRPTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      +    L+     L +   + SG +RIA T DLG+++L+  L  F   +P ++I
Sbjct: 64  RYLGYARQALEALDEGAESLGQDRTELSGPIRIAATSDLGRHILRPWLDAFCDEHPGVRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L ++  D+  +  D A+R    +Q S+L++R L +       AP Y +    P    
Sbjct: 124 TLVLGDRLADLMREDLDFALRYGN-LQDSALVRRPLASHPRVIVGAPSYFRQHGRPAHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +               L     P         Q +    +  + V G G+A  
Sbjct: 183 DLADHRCLILLRNGEPVTRW--QLTHASGPAPIDVRGGFQCDDGAVVRDWAVAGRGLAFK 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               V  +     L  ++         +            +L A  +F+  +  ++
Sbjct: 241 SWLDVAQDVCAGRLEVVLPAWSHAPTPLQLVALARRHRPARLTACADFLAARFAEF 296


>gi|70730152|ref|YP_259891.1| transcriptional regulator PltR [Pseudomonas fluorescens Pf-5]
 gi|4582980|gb|AAD24883.1| transcriptional activator of pyoluteorin biosynthetic genes
           [Pseudomonas fluorescens Pf-5]
 gi|38503458|gb|AAR22521.1| PltR [Pseudomonas fluorescens]
 gi|68344451|gb|AAY92057.1| transcriptional regulator PltR [Pseudomonas fluorescens Pf-5]
          Length = 343

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 130/290 (44%), Gaps = 11/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + ++  V ++GSF+     L +  SS+ R+I+ LE E+   LF R  + L LTE G  
Sbjct: 8   NDIDLYISVTKTGSFSETGRLLGIPPSSVMRRINSLEKELETCLFNRSTKCLILTETGLL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +   +   + E++E +    G L+++  +  G+  +   L   L  +P ++I+
Sbjct: 68  FLEHAKNISRCIGHARSEVKEHTASTLGVLKVSAPVAFGRRHVAPLLSRILNHHPGLKIE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L++K +D S+D  D  I+L   +  S+LI  KL  +     A+P Y++    P ++++
Sbjct: 128 FSLNDKALDPSIDNVDICIKLG-ILPDSNLIPTKLADMRRVLCASPEYIRQHGCPQTLED 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H  +         +    W   VD  + +    S L VNS   ++   + G GI   
Sbjct: 187 LYQHACLIHSTCSNFSL---TWQFKVDGLLKKLMPSSRLSVNSSELLVDGALQGIGIIHA 243

Query: 245 PDYIVKD---NPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRN 288
           P ++V +   +  LV ++++          +Y     +     K + F N
Sbjct: 244 PTWLVHEQIASGQLVSLLDEYCEADPQQGAIYALRARSSVVPAKTRLFIN 293


>gi|238785906|ref|ZP_04629872.1| LysR-family transcriptional regulator [Yersinia bercovieri ATCC
           43970]
 gi|238713175|gb|EEQ05221.1| LysR-family transcriptional regulator [Yersinia bercovieri ATCC
           43970]
          Length = 301

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 121/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +  V   G F+ AA  L L +S +SR+++ LE  +G++L  R  R   +TE G
Sbjct: 3   DLNDLYYYAEVVEHGGFSAAARVLGLPKSKLSRRLALLEDRLGVRLIQRSTRRFAVTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  +    Q  +  +  +P G +RI   + L Q  +   L +F+   P + 
Sbjct: 63  RTYYEHCKAMLEEARAAQESIDLTRAEPRGVVRITCPVALLQTTVSSMLADFMASCPLVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D AIR+R  P+Q+S L+ + L        A+P  +       +
Sbjct: 123 LHLEATNRQVDLVAEAIDIAIRVRPPPLQNSDLVLKVLGNRCQCLVASPELITRQGAVTA 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G    + +   +        I       L      ++      G G+ 
Sbjct: 183 PADLSGWPSLGLGQPQQEFIWRLDGPEGAHAAIYHQ--PRLVTADMTTLRSAAQRGVGVV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V +     +LVR++ D       ++  +P        +++  +++ L+
Sbjct: 241 QLPVMMVAEQLAAGSLVRLLPDWSLRHEIIHAVFPSRRGLLPSVRSVLDYLALR 294


>gi|300693404|ref|YP_003749377.1| transcription regulator protein, lysr family [Ralstonia
           solanacearum PSI07]
 gi|299075441|emb|CBJ34736.1| putative transcription regulator protein, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 323

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 118/293 (40%), Gaps = 8/293 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +    +  F      GS   AA    ++  + S+ ++ LE  +G++L +R  R L L
Sbjct: 1   MPINELRAIATFAKAVELGSIRRAAAAQGVTPQAASQALAQLEVHLGVRLLHRTTRSLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G +           LE    +++ES  + +G LRI         +L   + EF  LY
Sbjct: 61  TDEGQRFLETAQPALAALERALNQVRESKDEIAGPLRIVGPKSSFAAILMPVIDEFCRLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +Q  + LD+   +  ++  D   R+        +I R+L  + +   AAP YL+    
Sbjct: 121 PQVQPDVQLDDGKSNWVLERVDVGFRIGTS-PDEGVIARRLFPVQLMICAAPSYLERHGA 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P S++EL  H    F    P   +   W   +D  I    IS     N     +Q  + G
Sbjct: 180 PKSLEELATHRCSAFRH--PAKDQVLPWYLNIDGEIVHRHISPTFSTNDTELELQAVLAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             +  + +     +     LV ++   ++    V+  Y        +++AF +
Sbjct: 238 QVVGQIANLAAAAHIRAGRLVPLLLQHMSDHIGVHLYYGSRTAQPRRVRAFID 290


>gi|116252479|ref|YP_768317.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257127|emb|CAK08222.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 297

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 131/293 (44%), Gaps = 6/293 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR+ SFT AA +L +SQS++S  I GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLIAFLAVARAQSFTKAAGKLGVSQSALSHTIRGLEERLGLRLLTRTTRSVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L         ++E+    L     KP+G +RI         +L   L++ L  YPDI ++
Sbjct: 67  LLVSIGPRLDEIESELAALSAFREKPAGTIRINAGEHAADAVLWPALQKLLPDYPDINVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+D    DI  +  D  +RL + +    +  R    + M    AP Y     +PL+ Q+
Sbjct: 127 IIVDYGLTDIVAERYDAGVRLGEQVAKDMIAVRIGPDMRMAVVGAPAYFDTRPKPLTPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN I     +P     + W    D      R+   L  N+    +   + G G+A +
Sbjct: 187 LTDHNCINL--RLPTYGSVYAWEFEKDGRELRVRVEGQLVFNNIALRLNAVLAGMGLAYM 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P+ +V+    +  LVR++ED   P    +  YP     +       + +  +A
Sbjct: 245 PENLVEAPLADGRLVRVLEDWCLPFSGYHLYYPSRRHTSPAFALLVDALRYRA 297


>gi|167906714|ref|ZP_02493919.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|226197960|ref|ZP_03793532.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225929836|gb|EEH25851.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 335

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+
Sbjct: 1   MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   LE  +   + +   P G LR+     L +  +   L +FL  YP 
Sbjct: 61  DGEAYYRRCVRLIADLEEAEGAFRAA--APRGLLRVNLQGTLARYFVVPALPDFLARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IRLHIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            +  L  H  + +  +     +      TVD  + E R+ + + V          V G G
Sbjct: 178 ELAALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++  +
Sbjct: 236 IVQVPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRER 291


>gi|158422935|ref|YP_001524227.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
 gi|158329824|dbj|BAF87309.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
          Length = 305

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 122/289 (42%), Gaps = 10/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  V R+GSF+ AA +  ++ S+I RQI  LE ++G+ LF R  R LTLT+ G +
Sbjct: 7   EYLATFVDVVRAGSFSGAARRRAVTPSAIVRQIDALERDLGVSLFIRSTRALTLTDAGQR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           LH         L  T  E+       +G LRIA     G+  +   +      +P + ++
Sbjct: 67  LHERAVRHLDDLADTHAEIAAFEGSVTGTLRIACFPTFGKRYVLPVVVGLQAKHPALLVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D   +  D  IR+   +  S+LI  KL  +     A+P YL     P S  +
Sbjct: 127 LDLTERLADPVAERLDVVIRMGA-LTDSTLIATKLAPLARLLVASPAYLARAGTPTSAAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H LI    L    +  +  +       G      L+ + + +       G GIA L 
Sbjct: 186 LSSHRLI--DKLHGADLLGWRDVLGCPAGFGGNGTVALRSDDFEAQRAAAEAGLGIAFLS 243

Query: 246 DYIVKDN---PNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            ++V  +     L+R++   E        VY       + + K+KAF  
Sbjct: 244 SWVVGPDVKAGKLIRLLSGDEPWNQGPSGVYAL-RALPQPSAKVKAFIE 291


>gi|90422306|ref|YP_530676.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104320|gb|ABD86357.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 301

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L +F  V    SF   A++L LS++++S+ ++ LE ++G +LF R +R L LT+ G
Sbjct: 6   DFEGLAIFAKVVELRSFAATADELVLSKATVSKAVTRLEQKLGARLFNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +    E  + E    S  P G +R+A  +  G  ++   L EF+  YP++ 
Sbjct: 66  HRLAERATRLLADGEAAENEALAQSGAPRGLVRLAVPMTFGVKVIAPLLPEFMQNYPEVA 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+  D  D  IR+   +  SSL+ R+L  +     AAP YL     P   
Sbjct: 126 IDLHLSDATVDLIGDGFDAGIRIA-TLPDSSLLARRLCAMPRFTVAAPSYLATYGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H  + +  L       +++               L+VN+  +++   + G GIA 
Sbjct: 185 MHLAAHRCLGYAYL--STPNTWHYTNAAGEQADVRLSGPLRVNNGEALLPALLAGLGIAD 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP++IV D   +  +  I++        V+   P       +++    F+  K 
Sbjct: 243 LPEFIVGDALASGAVEVILQGWHQREGAVHLVMPPGGPRPARVEVLAEFLAEKL 296


>gi|84386467|ref|ZP_00989494.1| Hypothetical transcriptional regulator, LysR family [Vibrio
           splendidus 12B01]
 gi|84378572|gb|EAP95428.1| Hypothetical transcriptional regulator, LysR family [Vibrio
           splendidus 12B01]
          Length = 285

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 124/298 (41%), Gaps = 17/298 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  V   GSF  AA   +LS + IS+ +  LET +  +L +R  R  +LT+
Sbjct: 1   MDKLTSMKVFVYVVEQGSFRSAANHFNLSATMISKHVHSLETSLNSQLIHRTTRKQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   +   +  +Q    +P G ++I   +  G  +L   + +FL   P 
Sbjct: 61  SGQLYYRECKRILEDISNAENLIQTLENQPQGTVKINCPVTYGNKVLAPIVAKFLAQQPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L+N  +D      D  +R+ + +  SSL+ R L    M   AAP YL    E  
Sbjct: 121 INVELMLNNDLVDPYSSDIDLIVRIGE-LSDSSLVARYLGDYEMCYCAAPAYLNQHAEIR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L +H  + F            + +             L  N+   +    + G G+
Sbjct: 180 VLEDLAQHPSLGFS-----------YSSQAPHATPNKERVRLMSNNGDVLRYAALQGVGV 228

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            L P  +V +      L+ I+  +      ++  Y +  + + K + F  F+     +
Sbjct: 229 LLQPTILVAEEIERGMLLEILPGMAPLPKPIHLLY-KTKQLSLKNRTFVEFLLAALSE 285


>gi|312884850|ref|ZP_07744542.1| Transcriptional regulator, LysR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367502|gb|EFP95062.1| Transcriptional regulator, LysR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 305

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 128/297 (43%), Gaps = 6/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L+V   VA   S T AA  L +  ++ S  +  +E  +G +LF R  R L L+  
Sbjct: 1   MLLEDLKVILKVAEFRSITAAATHLDMRTATASAAVKRVEASLGAELFVRTTRSLRLSTA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      E    LE  ++ ++E      G++RIA + DLG+N++   L EF+  YP++
Sbjct: 61  GERYLPQCEEALQMLEKAKLNIREDQGVIKGEVRIALSSDLGRNVITPWLDEFVCEYPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++ ++ + +ID   D  D A+R   P   S++   K+  +     A+  YL     P  
Sbjct: 121 SLRCLISDSNIDFYRDPIDMALRYGSP-SDSNIYGFKICDVPKVLCASKAYLAEHGTPSK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +HN + +   +   + D       ++ +          +    + ++CV G G+A
Sbjct: 180 PHDLLEHNALIY--QLHDVLHDQWQFDHGEKSVKVKVKGNRASDDGDLVRRWCVSGRGLA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +     + D+     +  +M D    S  ++   P     T  ++  R+ +  K  D
Sbjct: 238 VKSCLDMADDLLTGRVRSVMPDYKPASTELWLICPSRQTVTPTVRLLRDMLREKTED 294


>gi|307254609|ref|ZP_07536441.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259062|ref|ZP_07540792.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862450|gb|EFM94412.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866729|gb|EFM98587.1| Transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 295

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 122/290 (42%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  
Sbjct: 1   MDLNNLRLFVAVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTAL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+         L     +      + SG LRI T            + EF   YP +
Sbjct: 61  GLQLYEKVYLSLDNLTQATQDFIGEQQELSGYLRIYTVSACEPIW--AAIAEFQAEYPQV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     ++ +D+  D  D A R+   + + ++I RK++ +     A P +L     P +
Sbjct: 119 KVHCQATDRVLDLVEDGIDIAFRMGD-LHTENVIARKMMDLDAVLVAHPDFLARHGTPKT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L       +     +  +    L   ++ +    I     N   +I         I 
Sbjct: 178 PQDLTALPFACWA----RAGQKSATLQLGEQAVKIEPI--FTSNDVYAIAHQAKSAHAIC 231

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LPDY+ ++      LV +M D  T ++ ++  YP     +  +K F  F
Sbjct: 232 QLPDYMAQELTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGF 281


>gi|261213087|ref|ZP_05927371.1| transcriptional regulator LysR family [Vibrio sp. RC341]
 gi|260838152|gb|EEX64829.1| transcriptional regulator LysR family [Vibrio sp. RC341]
          Length = 296

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 124/298 (41%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   +  F  L+P 
Sbjct: 61  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVIAFTDLHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 121 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATEEYLAQHAPIE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   GI
Sbjct: 180 LPQDLTHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +         L  ++ D   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 234 IRLPCDLANPLLQAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 291


>gi|167579536|ref|ZP_02372410.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 304

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 127/296 (42%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  V    SF  AA QL +S ++++R I  LE  + ++L  R  R L+LTE G 
Sbjct: 4   LQAMRVFTRVVDLASFNLAARQLGMSAAAVTRSIGMLEAHLNMRLLNRTTRSLSLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  KL+  +  L +++  P G LRIA+++    + L   L  + +L+P +  
Sbjct: 64  EYLDGCRAIIDKLDEIESNLVQATRDPRGTLRIASSMSFAASGLGPLLAAYRILHPRVAF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +  +D+     D      + + SS+L+ R L TI     A+P YL     P +  
Sbjct: 124 DVTTFDTHVDMVEGAYDVCFSDDRHLASSTLVSRALTTIREVTVASPAYLARHGTPHNPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H+L+   D   +  E     A           S L   +   +    +   GIA L
Sbjct: 184 ELGEHSLLAISDGTARSWE----FADASGAYRVYAGSVLVSENSAMVRIAALNHMGIAQL 239

Query: 245 PDYIVKDNPN---LVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V  + +   LV ++E          V   YP     + K ++F +F   + R
Sbjct: 240 PLPLVAADLDARMLVPLLERYELNGGPRPVSILYPGRRHLSMKARSFIDFAVEQYR 295


>gi|161525726|ref|YP_001580738.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189349552|ref|YP_001945180.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160343155|gb|ABX16241.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189333574|dbj|BAG42644.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 327

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 124/291 (42%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE+ +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEHQSFRRAAHHLGVSNALVTRSIAMLESHLNTRLIHRTTRNLSLTEAGVRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  + +++ +P G LR+  +  L    L   L  F   YP++++Q+ 
Sbjct: 67  DGCRALLEEFDHLEASVAQATHEPGGTLRVVASGLLSPVALTPLLGRFRHRYPELRVQMT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  I        + +LI + L      A A+P YL+   EP +  +L
Sbjct: 127 IAEAPLDVLDAGYDVGIVTGDRFDGNPALIAQALAPNPFVACASPAYLERRGEPRTPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +       +    +  +    R           VN    +    V GSGIA+LP+
Sbjct: 187 PRHDWVALAP--HQHPGAWRLVGPDARVHTVTVRPACTVNQLALVHAATVAGSGIAMLPE 244

Query: 247 YIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + V    D+  LVR++       P   +   YP       + ++F      
Sbjct: 245 HCVADAIDSGTLVRLLPGYRIDDPHTQLSLVYPNRQFVPARTRSFVEHAIE 295


>gi|237800554|ref|ZP_04589015.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331023414|gb|EGI03471.1| regulatory protein, LysR substrate-binding protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 301

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 129/303 (42%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  +A   SF   A    LS ++++R ++ LE+ +GI L  R  R + LTE
Sbjct: 1   MDRIQEMTLFAGLAEQTSFAGVARHFGLSTATVTRAVASLESRLGILLVVRTTRNMRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L+  +         P G L +      G   +   +  FL  +P 
Sbjct: 61  AGQRFAADCRRLLADLDEAESAAGGLHALPGGLLTVTAPQMFGALHVVPVMTGFLERFPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+ IL ++ + +  +  D A+R+   +  SSL      ++     A+P YL+    P 
Sbjct: 121 VDIRAILVDRVVSMLDEGVDVAVRIG-TLPDSSLTAIPTGSVRRMVCASPAYLEKHGAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L +H+ I+            +WL  +D       + S L + SY + +   + G G
Sbjct: 180 HPDDLRQHSTIS----TTTAERSPHWLFRIDGKDYSVDVGSRLSLTSYQAAISAALQGWG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR-D 296
           +  +P Y ++++     L  +++        V+  Y E  + + K++AF +F     R D
Sbjct: 236 LTQVPYYQIREHLQEGRLKCVLDTFEIMPEPVHVVYLEGRRRSSKVRAFVDFCVSTLRHD 295

Query: 297 WKF 299
            +F
Sbjct: 296 LQF 298


>gi|323529542|ref|YP_004231694.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323386544|gb|ADX58634.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 304

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 122/275 (44%), Gaps = 6/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S++++ +E+  G+ L  R  R + LT +G         +  +++     L
Sbjct: 27  RELGLTAAAVSKRLTQMESRAGVALVNRTTRRMMLTPEGELYLGHARRILDEIDELAELL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +   P G LR+  T+  G++ +   +  F+  YP + +QL L      ++ D  D  I
Sbjct: 87  GSAKKSPKGLLRVNATLGFGRSHVAPAISRFVAKYPQVSVQLQLSVTPPPLTDDTFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P   + +I R+L        AAP Y+     P++  +L +HN I    GD      
Sbjct: 147 RFGEP-PDTRVIARRLAGNRRLLCAAPAYIAAHGMPMTPHDLTRHNCIGIRQGDEAYGVW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
              +      +         L  N     +++ + G GI +  ++ +K    + +LV ++
Sbjct: 206 RLTSGKGASQKTEAVRIKGTLTTNDGEIAVKWALEGHGILMRAEWDIKQYLADGSLVVVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               TP+  ++  Y +  + + +++AF +F+  + 
Sbjct: 266 PGHDTPNADIFAVYSQRHQMSNRIRAFVDFVAREL 300


>gi|161869360|ref|YP_001598527.1| LysR family transcriptional regulator [Neisseria meningitidis
           053442]
 gi|161594913|gb|ABX72573.1| lysR-family transcriptional regulator [Neisseria meningitidis
           053442]
          Length = 271

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 117/270 (43%), Gaps = 9/270 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ S++SR +  LE ++G+ L  R  R L+LTE+G++  R    +  ++   + E+    
Sbjct: 1   MANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAETEMLAVH 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             P G LR+ + + +  +LL     +F   YP I++ L+     I++     D A+R  +
Sbjct: 61  EIPQGVLRVDSAMPMVLHLLAPLATKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGE 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            +  S L  R L        A+P YL     P S +EL  H  + F +  P  +  +  L
Sbjct: 121 -LDDSGLRARHLFDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTE--PGSLNTWAVL 177

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITP 265
                P           +S   +   C+ G GIA L D++V ++     L+ ++ +  + 
Sbjct: 178 DAQGNPYKI--SPHFTASSGEILRSLCLSGCGIACLSDFLVDNDIAEGKLIPLLAEQTSD 235

Query: 266 -SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +      Y        +L+ F +F+  + 
Sbjct: 236 KTHPFNAVYYSDKAVNLRLRVFLDFLVEEL 265


>gi|15966724|ref|NP_387077.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307315818|ref|ZP_07595329.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307322584|ref|ZP_07601925.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15075996|emb|CAC47550.1| Transcription regulator LysR family [Sinorhizobium meliloti 1021]
 gi|306891775|gb|EFN22620.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306898527|gb|EFN29203.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 315

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 134/293 (45%), Gaps = 6/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F WD L+ F  VAR+G  + AA +L  S +++SR+I  LE  + +KLF R+ RG  LT 
Sbjct: 4   NFTWDDLQFFLAVARTGQLSTAARRLRTSHATVSRRIDRLEFALKVKLFERNPRGYVLTT 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  + E  Q+++ +      G +R++T    G   L   L EF   YP+
Sbjct: 64  MGQRFVETAERMERETEQLQLDISDGMTAQRGVVRLSTLEGFGNFFLADRLGEFAERYPN 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+   + + +S   AD A+ L  P ++ +     L    +H Y A  YL       
Sbjct: 124 ISLELVAIQQIMSLSRKEADIAVALAAP-KAGAYHAEVLTPYTLHVYGARSYLAGQPPIR 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + + D +      F         I     +  Q +S L+ ++    G G+
Sbjct: 183 TRSDLGSHRFVGYIDDM-----IFTPGLDYLGEIQPGLRAHFQSSSILTQLKAVRQGLGL 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP ++ KD PNL  ++ D I    T +      L    +++A R+F+   A
Sbjct: 238 CVLPHFMAKDEPNLEIVLPDEIELKRTYWLICHRDLIAIPRVRAVRDFLVDAA 290


>gi|150398676|ref|YP_001329143.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150030191|gb|ABR62308.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 296

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 123/289 (42%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   VA  GSF  AA++L ++ S++S  +S LE  +G++L  R  R +  TE+G 
Sbjct: 6   LSQLAVLSAVAAHGSFRGAAKELGIAPSAVSHAVSSLEASLGVRLLARTTRSVAATEEGG 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L         ++    +   E+  +P+G LRI         +L   L +FL  YPDI +
Sbjct: 66  RLLERLQPALDEIAHALLRAAEARDRPAGNLRITAPRFAADLILAPRLGDFLGTYPDIVL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  ++   +I  +  D  IRL + +++  +  +    +     AAP Y +    P   +
Sbjct: 126 EIANEDGFTNIVEEGYDAGIRLGESLEADMIAVKVGPELKSAVVAAPSYFERFPTPRHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I            + W            +S  L +     I+   + G+G+A 
Sbjct: 186 DLAAHRCI---RRRFSNGTIYRWEFEKGGEELTVSVSGPLILGEDRPIITAALGGAGLAY 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L +  V        L+R++ED   P    +  YP        L+AF +F
Sbjct: 243 LFEPRVSALLVEGRLIRVLEDWCAPYAGPFLYYPTRRLMRPALRAFIDF 291


>gi|107101483|ref|ZP_01365401.1| hypothetical protein PaerPA_01002526 [Pseudomonas aeruginosa PACS2]
 gi|254240489|ref|ZP_04933811.1| hypothetical protein PA2G_01141 [Pseudomonas aeruginosa 2192]
 gi|126193867|gb|EAZ57930.1| hypothetical protein PA2G_01141 [Pseudomonas aeruginosa 2192]
          Length = 300

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 142/287 (49%), Gaps = 5/287 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +++   VA + SFT AA  L L+QS +SR I  LE E+G++L +R  R ++LT  
Sbjct: 1   MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  +LE  +  L +    PSG L+I T   LG+ ++   L+E    YP +
Sbjct: 61  GQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRRYPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI+  + ++ +D++ +  D A+RL + +    LI R L  +     A+P YL+    P  
Sbjct: 121 QIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRGHGTPER 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  HN  T  DL    + ++       +P+       L ++   +++   ++G GI 
Sbjct: 180 LEQLAGHNCPTVRDLHTGKLLEWQ-FQRDGQPLSLAVRGDLVLDVADALVDAALVGQGIV 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +  ++ ++      LVRI++    P   V   YP + + + K+ A 
Sbjct: 239 QVMGFMAEEAIRRRRLVRILQPFEPPLCPVSLIYPPSRQCSLKIGAL 285


>gi|330809305|ref|YP_004353767.1| DNA-binding transcriptional activator GcvA [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377413|gb|AEA68763.1| Putative DNA-binding transcriptional activator GcvA [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 123/291 (42%), Gaps = 8/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + L+ F   AR  SFT AA +L+++Q++IS QI  LE E+G++LF R   GL LT++G
Sbjct: 7   SLNGLKAFESAARHMSFTKAALELNVTQTAISHQIRRLEEELGVRLFLRLKDGLALTDEG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                     +H+L      L ES       L I+T +      L   L  F   +P+I 
Sbjct: 67  HGYFPGVRAAFHELRYCTQTLLESRNNS--VLTISTLVSFASKWLLPRLASFQQAFPNID 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++    + +D      D AIR         L    L+   +    +P  L+      + 
Sbjct: 125 VRVTASTERVDFRKGGVDAAIRYGSG-DWKGLRAGWLMADEIFPVCSPRLLQGLTALENP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H L+    +     +   WL+   +P      S L  +  +  +Q  V G G+ +
Sbjct: 184 GDLARHTLLQVSGVTHD--DWSAWLSAAGQPKKLAEGSRLTFDLAMMAVQAAVDGLGVCI 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                V+D+     LV   +  +      YF  P    +T K++AFR ++ 
Sbjct: 242 GRSTYVEDDLKAGRLVAPFDLRLKSDLGFYFVSPLETADTPKVQAFRTWLM 292


>gi|219871904|ref|YP_002476279.1| LysR family transcriptional regulator [Haemophilus parasuis SH0165]
 gi|219692108|gb|ACL33331.1| LysR family transcriptional regulator [Haemophilus parasuis SH0165]
          Length = 290

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 15/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L +F  V + GS + A+E+L++  ++ISRQI+ LE  + I+LF R   G+  T  
Sbjct: 1   MNLNALSLFVSVVQDGSLSKASERLNVPIATISRQITELEKSLHIQLFDRKKSGVKPTMA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL+    +    L   +    E   + SG LRI+T   L +      L EF   YP +
Sbjct: 61  GQKLYEQVYQNIDNLLQVEKAFSE-HQEISGTLRISTFTGLEEVW--AWLDEFGAKYPKV 117

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I   + ++ +D+  D  D A R    + + + + R ++T  +   A PH L     P +
Sbjct: 118 SIHCQVTDRVLDLVEDNIDFAFRAGD-LHTDNAVARLVLTAKVKCVAHPHLLAQYGTPTT 176

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +   I F     K +       T+  P           N   +I  +   G G+ 
Sbjct: 177 PDDLVRFPCIGFAKAQQKHLSIQLENKTLHLPY------VFASNDVYAIAYFIQQGRGVG 230

Query: 243 LLPD----YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            L +     ++++   LV ++ D    ++ V+  Y +    +  ++AF +F+  K 
Sbjct: 231 YLSENIANRLIEEYG-LVEVLHDYPMRTYPVHLLYLKHRYPSSVMRAFLDFVVEKV 285


>gi|156932482|ref|YP_001436398.1| hypothetical protein ESA_00261 [Cronobacter sakazakii ATCC BAA-894]
 gi|156530736|gb|ABU75562.1| hypothetical protein ESA_00261 [Cronobacter sakazakii ATCC BAA-894]
          Length = 293

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 131/291 (45%), Gaps = 12/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F   A+S SF+ AA  L ++ +++S+ +  LE  +   LF R+   + LTE+G+ 
Sbjct: 9   RLLPAFLAAAQSQSFSAAARLLGVTPAAVSKSVRQLEARLSRVLFQRNTHFVVLTEEGAA 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + ++H L     +  +    P G +R++     G+ LL   L  F   YP +++ 
Sbjct: 69  LREQVAPLWHALNQALEKPADE---PQGLVRVSVIPGFGRYLLMPELPAFQQRYPQVRLD 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D + +++  +  D AI  ++ +Q S ++ R++  + M   A+P YL     P   Q+
Sbjct: 126 LAMDPRRVNLIGERIDVAIG-QRTVQDSRIVTREIRPMRMMLAASPAYLAQFGTPQQPQD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +   +  P   +  +WLA  D    E + + L       ++   +   GI  L 
Sbjct: 185 LLHHRCLVHRN--PGNGKLQSWLA--DELAMEEQHAFLISTFPDVLVDAALAEMGIVSLA 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           D+ +        LV +ME        ++  YP       +++AF +F+  K
Sbjct: 241 DWYLAPLIATGRLVPLMEAHWPAPQPLWVKYPHHR-LAPRVRAFVDFLIEK 290


>gi|87118754|ref|ZP_01074653.1| Transcriptional Regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86166388|gb|EAQ67654.1| Transcriptional Regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 297

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 134/296 (45%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++  F VVA++GSFT A++ L  S++ +S Q+S LE  +G+KL +R  R L LT
Sbjct: 1   MRSMIEEMTTFAVVAKTGSFTQASKVLGKSKTYVSLQVSRLEDAIGLKLMFRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G        ++   ++  +  L+       G + ++  +  GQ  +   + EF L YP
Sbjct: 61  PSGLAYVDYCEQLLATIDEAERALEVLKGDMQGVISLSVPVSFGQVFMTQVIAEFQLKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L L N   D+  +  D A+R+   +    L+  K+  + M  YAAP YL     P
Sbjct: 121 DVKVALELHNSVKDLKFESLDMAVRMSSEL-DEDLVAIKIGCLDMGVYAAPTYLAKYERP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
           +  + L  H  +    +     +   W   ++  +    I+  L +N Y  I +  + G 
Sbjct: 180 ICPENLCHHTGVLHSSVD----KFHRWPLLIEGEVVLTEINWNLSINHYPLIRESAIEGK 235

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+VK +     L  ++ D       +Y  YP       K + F +FI  
Sbjct: 236 GLVRLPSYLVKQDLIEKRLCEVLSDFKLEPDPIYLVYPYQGVLPLKTRVFIDFIKA 291


>gi|254227028|ref|ZP_04920587.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125620432|gb|EAZ48807.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 301

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 122/294 (41%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 3   LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L     +L E S    G L I+         L   L +F    PDI +
Sbjct: 63  SYFLDIKDIFSSLAEATDKLLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDV 120

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +    + 
Sbjct: 121 RIKAVDMDEGSLTDDVDVAIYYGRG-SWPGLRADKLYQEFLIPLCSPALLLGNKPMEKLS 179

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+   A  +             +    ++Q    G G+AL 
Sbjct: 180 DLAYHTLLH-----DTSRKDWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALG 234

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 235 NNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 288


>gi|330812718|ref|YP_004357180.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380826|gb|AEA72176.1| putative transcriptional regulator, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 300

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 131/298 (43%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  VA++  F+ AA +L LS +S++R ++ LE  +G  L  R  R + L+E
Sbjct: 1   MDRFQEMQVFLAVAQASGFSAAARRLGLSAASVTRAVAALEQRIGTPLLVRTTRNVYLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L+  +     S V+P G+L I   +  GQ  +   L ++L  +P+
Sbjct: 61  AGQRFLEDCRRILSDLQEAEDSAAGSHVQPRGQLTITAPVLFGQLFVTPLLVDYLHRFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I  +L ++ + +  +  D A+R+ + +  S+L   ++  +      AP +      P 
Sbjct: 121 VSINALLLDRTVSLVEEGIDVALRIGE-LPDSNLHAVRVGEVRRVVCGAPDFFARHGRPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L++  ++    +       F       +P+    +  L V +  + +     G G+
Sbjct: 180 HPEDLERMPVVASSAIGQVKSWTF---IDSGQPLAVRPVPRLVVTANQAAITAACQGLGM 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +  Y V  N     L  ++ D   P   ++  Y        ++++F +F+    R+
Sbjct: 237 TRVLSYQVAGNVAAGELEIVLADFELPPLPIHVVYQGGRNAPTRVRSFVDFVVGALRE 294


>gi|310821369|ref|YP_003953727.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394441|gb|ADO71900.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 309

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 133/285 (46%), Gaps = 10/285 (3%)

Query: 12  YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTS 71
             V  +G  T AAE+L L +S++SR+++ LE  +G +L  R+ R L LTE G + H   +
Sbjct: 15  VEVVATGGITAAAERLGLRKSTVSRRLASLEARLGARLLERNTRRLRLTEAGREYHAHCA 74

Query: 72  EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK 131
            +  +       L ES   P G LRI  T+ L   LL   + EFLL  P +++++ L   
Sbjct: 75  RLVAEAREVNKALIESRGTPQGTLRI-ATLSLLGELLTPLIAEFLLRQPRMRVEVSLAPA 133

Query: 132 DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL 191
            +D+  +  D A+R   P+  SSL+ R+L  +H   YA+P YL++   P   ++L  H+ 
Sbjct: 134 HVDLIAEEYDLALRTG-PLVDSSLVMRRLGRLHTGCYASPAYLRHRGTPRVPEDLQGHDC 192

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           +    L+ +   D  W           P    ++V S  +       G G+  LP  +V 
Sbjct: 193 V----LLAEPGTDEVWFFGEGPSARTLPVEGRIRVPSVRAGQSAARAGLGVVRLPSSLVA 248

Query: 251 DN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D+     LV ++E    P   +   YP   +   K++AF   +  
Sbjct: 249 DDVRAGLLVPLLEAETPPGIPILAVYPSRPQLALKVRAFLELLSE 293


>gi|229526403|ref|ZP_04415807.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229336561|gb|EEO01579.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
          Length = 300

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 125/298 (41%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 5   MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 65  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 125 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATEEYLAQHAPIK 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   GI
Sbjct: 184 LPQDLAHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +         L  ++ D   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 238 IRLPCDLANPLLRAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 295


>gi|296115316|ref|ZP_06833955.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978139|gb|EFG84878.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 308

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 137/294 (46%), Gaps = 6/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D++ + VF     +G F  AAE+L LS+S++++ I  +E  +G++LF R  R   LT
Sbjct: 1   MRDDFEGISVFLKAVEAGGFARAAERLSLSRSAVAKTIGRIEKRLGVRLFQRTTRRHNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   +        ++   Q  L+       GKL +     LG+  ++  L +  + Y 
Sbjct: 61  EEGHIYYERCVRAREEVRVGQSVLEFGRFNVKGKLTVIMPTVLGRYCVEPFLLDLAIKYE 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSS-LIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++++ L   + + ++  +  D AIR     + +S L  RK+        AAP YL  C  
Sbjct: 121 NLELDLRFSDLEHNLVTERFDLAIRNGLDREPTSFLNVRKIAAQRQVLCAAPSYLLRCGP 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             S++++  H+ + +      C+  F  +   +  +  P    LQ ++  ++    + G 
Sbjct: 181 VHSLEDIWHHDALIYWKNEQPCLWKFRDIGGTEFKL--PPKWRLQFDNQEAMADAALRGM 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA LP +++ ++     LV +++++   S  +Y  +P+    + +L    + +
Sbjct: 239 GIACLPRWLIHNHLNEGRLVSLLDELPLASQDIYAVWPQTKFMSARLSLTIDIL 292


>gi|262044433|ref|ZP_06017494.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038213|gb|EEW39423.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 295

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 130/295 (44%), Gaps = 13/295 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  + ++ +++F  +  +GSF  AAE L + + ++++ +  LE E G++L  R  R L L
Sbjct: 1   MQMNLFENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G + +R +  +  + +              G+LR+   I   + L+  +L +F   +
Sbjct: 61  TPEGEEFYRRSKPLLSQADDLLESF-APDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAH 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P+++I L   +   D+  D  DC +R+   ++    + R L  + +   A+P YL     
Sbjct: 120 PEVEIVLSSSDVRRDMLRDGLDCLLRVGD-LEDGDYVARSLGEVALTTCASPGYLARYGA 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P ++++L  H  +    +     +   W       I +  I   L +++      +   G
Sbjct: 179 PATLEDLQSH--LAVNWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDNSEV---FTAAG 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+     + ++   D+  LV ++ D   P   +   YP     + K++ F +++
Sbjct: 234 LGMLQGMRFFLQPYIDSGQLVEVLPDFPAPRRPLSLLYPH-RHLSHKVRVFADWL 287


>gi|313497082|gb|ADR58448.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 307

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 130/294 (44%), Gaps = 5/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +     V   GS + AA  L  + S +SR IS LE+ +G++L  R  R L+LT+ G 
Sbjct: 8   LGDVETLLEVVERGSLSAAAVALATTPSVVSRAISRLESHLGVQLLRRTTRRLSLTDSGL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        + ++ + +  L     +  G++R++     G + L   L  F L YP +Q+
Sbjct: 68  EYVEQARAAFQQIASAEQAL-SGHGEVQGRVRLSAPTTYGHHRLPAMLAAFTLRYPKVQV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L + N+++D+  +  D AIRL   +  SSL+ R+L    +   AAP YL     P S+ 
Sbjct: 127 ELNITNRNVDLVAEGYDLAIRLGD-LPDSSLVARRLEEARLCLVAAPAYLARAGRPQSLA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  HN + F          + +    +  +  P+ + +  +  L  +     G GI   
Sbjct: 186 ELAGHNCLPFIMPSNGRPGVWQFRQGEEELLFVPQGNPVVADDVLGCISLAEQGVGICQT 245

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++IV +      LVR++ED           YP   + +G  +A  + +    R
Sbjct: 246 YEFIVAERLQRGRLVRLLEDYEGARRPFSVIYPPHRQLSGASRALIDSLMTTGR 299


>gi|224460044|gb|ACN43568.1| PnpR [Pseudomonas putida]
          Length = 309

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 126/288 (43%), Gaps = 7/288 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
             F  VA +G+F  AA QL +++S IS +I  LE  +   LF+R  R + L++ G   ++
Sbjct: 8   EAFVRVAETGNFAKAALQLGVTRSVISHRIQQLEQFINAPLFHRSTRHVRLSDVGETYYK 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             S++     +    ++E   KP+GKLRI              + EF  LYPDI+I +++
Sbjct: 68  ECSDMVANFNSLTEHMRELRSKPTGKLRIQMLPGFAIGHFGRMMAEFNRLYPDIEIDVVV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +D   +  D A ++  P+ S +LI+RKL ++      +P Y      P    +L  
Sbjct: 128 NDRVVDPIEEGFDVAFQMFPPL-SETLIERKLFSVRRLFCMSPQYAAEFGVPQHPDDLLN 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H +  +     +    F         +       ++ NS   +  Y   G  I  LP  +
Sbjct: 187 HKIAMYAGYPSRNRWVFT---HGGEQLNLSLPGHMRSNSVHLLRDYAETGVCIVCLPTLV 243

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             D+     L+ ++ +    SF     +P   +   K++A   F+  +
Sbjct: 244 ASDDLLAGRLIPVLPEYSLSSFNFSAVFPATQRRALKVRALIEFLVER 291


>gi|288932952|ref|YP_003437011.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288887681|gb|ADC55999.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 304

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 132/298 (44%), Gaps = 7/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +   V   GS + AA  L++  +++SR I  LE+ +G++L  R  R LTLT+
Sbjct: 1   MDRLSAMALLVKVTELGSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   +E  + +      +P G+L I+     G+  +   + EF+  YP 
Sbjct: 61  AGVDYVAAAQRILEDVENAERQATGEYQEPKGELVISAPTMFGRQHVLPVISEFIARYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L+L +++ D+  D+ D A+R+   +  SS++  +L T+ + A A P  L    EP 
Sbjct: 121 IRVRLLLSDRNADLVSDHVDLAVRIGD-LADSSMVATRLGTMRIVACAHPALLAKYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L    +I     +P     F      D+ I  P +  L V +  S      LG G+
Sbjct: 180 RPRDLAALPIIRIESPMPYRGWRFRAAEREDQLINLPPV--LSVTTPESAADAARLGVGV 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A L  Y   D   +  L  ++E+V      V+  Y        KL+ F +F     R 
Sbjct: 238 ARLLHYQALDGLRHGELRLLLENVEPDPAPVHLLYTARDLAPLKLRKFIDFAAPALRQ 295


>gi|238763201|ref|ZP_04624167.1| LysR-family transcriptional regulator [Yersinia kristensenii ATCC
           33638]
 gi|238698700|gb|EEP91451.1| LysR-family transcriptional regulator [Yersinia kristensenii ATCC
           33638]
          Length = 301

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 120/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +  V   G F+ AA  L + +S +SR+++ LE  +G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYYAEVVEHGGFSAAARVLGVPKSKLSRRLALLEERLGVRLIQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  +  +  +P G +R+   + L Q  +   L +F+   P + 
Sbjct: 63  RTYYEHCKAMLEEAKAAQESIDLTRAEPRGVVRMTCPVALLQATVSTMLADFMASCPLVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D   +  D AIR+R  P+Q S L+ + L        A+P  +    E   
Sbjct: 123 LHLDATNRQVDPVAEAIDIAIRVRPPPLQDSDLVLKVLGNRCQCLVASPELIARQGEVKV 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G   P+    +N                L      ++    + G G  
Sbjct: 183 PSDLTGWPSLGLGQ--PQQEFIWNLAGPDGAHAAIYHQPRLVTADMTTLRSAALSGVGAV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V +   +  L+R++ +       ++  +P        +++  +++ L+
Sbjct: 241 QLPVMMVTEQLTSGELIRLLPEWSLRHEIIHAVFPSRRGLLPSVRSVLDYLTLR 294


>gi|83593549|ref|YP_427301.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576463|gb|ABC23014.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 308

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 127/294 (43%), Gaps = 8/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR G FT AAE+L ++ +++S Q+ GLE  +G+ LF R  RGL LTE+G 
Sbjct: 8   LNALRAFEAAARHGGFTRAAEELGVTPAAVSHQVKGLEDVLGLCLFRRLPRGLELTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 S  + +L      L+E     +G+L ++       N L   L +F    P++ +
Sbjct: 68  AYLPDLSRGFDRLARAGERLRE--GGLAGRLTVSVLPSFCANWLAPRLPDFQAACPEVHL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++ +N+  D + D  D AIR  + I    L     +   +    AP  L        + 
Sbjct: 126 RMLSENRFADFNRDGIDMAIRYGRGI-YPGLRAIPFLAEEVFPVCAPSLLNGALPLRGLA 184

Query: 185 ELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H L+ +  +   +    +      +   G      +      +++Q C+ G G+AL
Sbjct: 185 DLRHHTLLRSIDETAGEPWLYWRLWLAAEGIEGVAPDGGIGFTDGSALVQACLAGVGVAL 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               +V+D+     LVR    +  P  F+ +   P A     ++  F +++   
Sbjct: 245 GRTALVEDHLRTGRLVRPFAGLSRPADFSYFAVAPAANLENPRVACFIDWLRAA 298


>gi|269103637|ref|ZP_06156334.1| putative transcriptional regulator LysR family [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163535|gb|EEZ42031.1| putative transcriptional regulator LysR family [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 305

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 122/293 (41%), Gaps = 7/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LR    +A+ GSF  AA+ L +  +++SR++  LE  +G +L  R +R + LT  
Sbjct: 8   MKLDDLRTLIAIAKHGSFRSAAQALDIPPTTLSRRLQRLEDTLGSQLVLRDSRNVALTPL 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           G         +  +LE   +EL + S  +P G LRI+  + L    L     EFL LYP+
Sbjct: 68  GQNYVERCEPLIKELEVATLELDDISHSEPRGALRISAPVGLLTYKLMPLFNEFLSLYPE 127

Query: 122 IQIQL-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + + L  L N+  D S +  D   R+      SS     +        A+P YL     P
Sbjct: 128 VTLSLNHLSNQHHDYSPEQYDVVFRVGHQ-PDSSFAAATIGQSQRILVASPCYLAKNDTP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  +         +   +     D       +  L +    S+ Q  + G G
Sbjct: 187 QHPNDLYQHERLATVPEFEWALRHDDIQQHPDTLWVNSPV-RLAIADLNSVKQAAIAGLG 245

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA LP+Y+V D      L  +M D  +PS  +Y  Y         +  F +F+
Sbjct: 246 IACLPNYVVADALQRGALKTLMTDWYSPSRPIYMLYQRLEYTPAHISCFIDFM 298


>gi|330004976|ref|ZP_08305075.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328536461|gb|EGF62808.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 342

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 123/291 (42%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R +  +  +GS + AA Q+  +Q+++SR++  LE  +G+KL  R    + LT+ G 
Sbjct: 41  IELMRTYIRIVEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKLILRTTHAMKLTDDGE 100

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +R   +V       + +L+ +  +P G LR+      GQ  L   L  FL  +P + +
Sbjct: 101 RCYRHARQVVDAWLALEDDLRIADDRPVGVLRVRAPHAFGQQQLLAPLVAFLQRHPQLSV 160

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L++  +D   D  DCAIR+   +   + +   L  +     A+P  L       S++
Sbjct: 161 EWMLNDNTVDFLSDNIDCAIRVGAEV-DPATVSVLLAEVPRCVVASPELLAKYPPLTSLE 219

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     I         +   +      + +      CL  +S        + G G+A++
Sbjct: 220 ALSGLPWIAINTFYQHEVRLRH--QASGQIVSTAITPCLSTDSLYVARNTALAGLGVAMV 277

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             + V ++     L+ +       S  V+  YP A     +L+ F + +  
Sbjct: 278 SSWTVVEDIAAGRLIELFPQWRPASLPVHLVYPWARYYPTRLRKFLDLMRE 328


>gi|325921452|ref|ZP_08183308.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325548094|gb|EGD19092.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 323

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 133/310 (42%), Gaps = 16/310 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     +R F     +GS    A+ L +S +++S+ I+ LE  +G++L +R  R L LT
Sbjct: 1   MNI-LHSIRSFVSTVDAGSIAGGAKLLGVSAAAVSQNIARLEQHLGVRLLHRTTRSLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   LE  +  +      P+G+LR+A+T    +++L   L      YP
Sbjct: 60  ERGTLYFEQVRQLERDLERARQSVAGPQQAPAGRLRVASTAAFARHVLAPMLPALRQRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L+  ++ +  + +  D ++R+   ++   L+ R +  + +   AAP YL  C  P
Sbjct: 120 QLEIELLCTDRAVQHAQESVDVSLRIEAQLED-GLVARCIAQVPLVVCAAPEYLVRCGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +  EL   + +      P       W    +    +P +   +  +   ++      G 
Sbjct: 179 QTPDELKYQHCLLL--RYPVDGRCLPWNFVRNGVRFQPELGKAMVSDDIDALATMAAAGG 236

Query: 240 GIALLPDYIVK---DNPNLVRIM-------EDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           GIA L  Y+V+       L  +                 +Y C  +    T K++AF + 
Sbjct: 237 GIARLAAYVVQPYLQRGQLQPLFVPETRGTTQAAPEPLRIYLCVADRRDFTPKVRAFMDH 296

Query: 290 IFLKA-RDWK 298
           +  +   +W+
Sbjct: 297 VLERLPAEWR 306


>gi|157371330|ref|YP_001479319.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323094|gb|ABV42191.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 301

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 131/288 (45%), Gaps = 9/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D+L +F  V + GS   A  +L  S  +++R I+ LE   G +L  R  R L  TE G 
Sbjct: 4   LDELAIFVAVIQHGSLAAAGRKLRRSAPAVTRAIASLEQRFGARLVERTTRRLAPTEAGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      + H+ +   ++  +   + SG LRI + +  G+  +   +  FL LYP +QI
Sbjct: 64  RLAERAHLLLHEYQAAVLDTAD--TQLSGLLRITSPVQFGRKHVAPVVMAFLDLYPQMQI 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++L+++++D+  +  D A+R+   +Q SS + R+L  +     A+P YL    EPL   
Sbjct: 122 EMVLNDRNLDLIDEGLDVAVRIGH-LQDSSRVARRLGQVSRVTVASPAYLALRGEPLEPA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ I            F      DR    PR   L +N   + +     G GIA L
Sbjct: 181 QLVDHDTIVGTQRASLREWRFGPQENGDRVRLTPR---LLLNEVETQLLAARAGKGIARL 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y V D+     LVR++         V      + +   K++ F ++
Sbjct: 238 LSYQVADDLAAGTLVRLLPAFEPLPMPVQLVAQNSQRMPLKVRTFWDY 285


>gi|186472546|ref|YP_001859888.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184194878|gb|ACC72842.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 324

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 116/294 (39%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     VAR  SF  AA +L +S S++S  ++ LE  +G++LF R  R ++L+E G++ 
Sbjct: 8   ELEAVLAVARHRSFRAAANELGVSTSALSHAVAALEARIGVRLFNRTTRSVSLSEAGAQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +     +     +       PSG LRI T++             FL  YP++++ +
Sbjct: 68  VDSVAPALSSIRVALEQAGSFRDTPSGTLRINTSVGAAHQA-MPVFIAFLERYPEMKLDI 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + + + IDI ++  D  IRL + +    +              +P Y      P +  +L
Sbjct: 127 VTEGRLIDIVVEGFDAGIRLAETVPQDMIAVPFGDRQRFAVVGSPAYFAQHTPPRTPHDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I          +           +       L ++    ++     G G+  L +
Sbjct: 187 ARHRCIRTRMPSGSIYQWE--FERHGETVRIDGKGALTLDESGLMLDAARAGVGLTYLSE 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           + V  +     L+R+++D   P   +   YP        L+A    I    RDW
Sbjct: 245 WTVAADLEAGTLIRVLDDWTPPLDGLCLYYPGRRHAPAGLRALVAMI----RDW 294


>gi|291616299|ref|YP_003519041.1| YcaN [Pantoea ananatis LMG 20103]
 gi|291151329|gb|ADD75913.1| YcaN [Pantoea ananatis LMG 20103]
          Length = 306

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 118/292 (40%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L +F  +A   SF  AA+  +++ S++S  +   E  +G++L  R  R ++LTE G
Sbjct: 7   TLQELEMFCAIAHHRSFRKAAQARNVTPSALSHAMRHFEQRLGVRLLNRTTRNVSLTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +       +L     EL +   +P GKL++           +  +  F+  YP+I 
Sbjct: 67  AHFLQRIQPALVELSQAVDELNDWRARPHGKLKLNMPRSAETLFFESLILPFIQRYPEIT 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  ++  +DI     D  IR    +    +       +     A+P  ++    P + 
Sbjct: 127 LEIDSNDALVDILEAGFDAGIRYGDVLAQDMIALPFGPAMRTLVVASPALIERHGAPQTP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL     I       +      W A   + +       L +++   I+Q  + G+GIA 
Sbjct: 187 DELLAFPCIERRFPSGRRYRWEFWHAGQRQEVAV--SGPLVLDNNERILQAALSGAGIAF 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L + +V  +     LV ++      +   +  YP     +  L+ F +++ L
Sbjct: 245 LQEAVVSAHLQRGALVELLSGFTQHADGFWLYYPGRRYVSAPLRHFIDWLRL 296


>gi|264680812|ref|YP_003280722.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262211328|gb|ACY35426.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 303

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 129/295 (43%), Gaps = 7/295 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D ++L  F  V   G F  A   L L +S +SR+++ LE  +G +L  R  R   +
Sbjct: 1   MKLPDLNELYYFAQVVEHGGFAPAGRALGLPKSKLSRRVALLEERLGAQLLLRSTRSFAV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G + ++    +  + E  +  +     +P GK+R++  + L  + +   L EF+ LY
Sbjct: 61  TEVGKRYYQHCRAMLTEAEAAEESVALVHSEPCGKVRMSCPVALLASRVGRMLGEFMRLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P +++Q+   N+ +D+  +  D A+R+R  P+Q S L+ R L        AAP  L+   
Sbjct: 121 PRVELQVDETNRRVDVVGEGLDLALRVRPPPLQDSDLVLRTLADRRQCLVAAPELLQRLG 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +P    +L     +  G +        +    V   +       L   S L++    +LG
Sbjct: 181 QPGGPMDLSAWPSLDMGGVQETHRWVLHGPDAVRAEVRHQ--PRLVTQSMLALRDAALLG 238

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +G+  LP   V+++     LV+++         ++  Y         ++A  + +
Sbjct: 239 AGVVQLPSMFVREHLRSGTLVQVLPGWEPRPEIIHAVYASRRGQLPAVRALLDHL 293


>gi|264679752|ref|YP_003279661.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210267|gb|ACY34365.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 303

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 133/286 (46%), Gaps = 8/286 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ ++ +F  V   GS + AA QL ++ S++S+ I  LE + G+ L +R  R LTLT+ G
Sbjct: 3   DFRRMAIFAAVVERGSMSAAARQLDMTPSAVSQHIRQLEHDAGLTLLHRSTRQLTLTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +   + +       + EL     +PSG+LR+A      Q+     L  +L ++P+++
Sbjct: 63  QRFYTQCAAMCEAASRARAELAAEHQRPSGELRLAAPAGFTQHA-APALGRWLAMHPELR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-EPLS 182
           ++L++D+  ID+     D A+R    +Q SS + R L        A+PH++K     P  
Sbjct: 122 LRLLMDDAPIDLIQARVDLALRFGN-LQDSSWVARHLGRSATVLCASPHWIKAHGSTPRH 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY-LSIMQYCVLGSGI 241
             EL +   +           DF W           ++  L ++++  ++ Q+C  G G+
Sbjct: 181 PSELAQLPWLEMS-RSDDAQADFLWRQQDTAQEYRLQVRPLMISNHRSAVQQFCEAGLGL 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           ALL  + V    +  +LVR++ D       ++           K++
Sbjct: 240 ALLSAHDVAASLETGSLVRLLPDWDMGMLDIWAVTASRDSLPAKVR 285


>gi|255746215|ref|ZP_05420162.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262158705|ref|ZP_06029819.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262168886|ref|ZP_06036580.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|255735969|gb|EET91367.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262022585|gb|EEY41292.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|262029585|gb|EEY48235.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|327486015|gb|AEA80421.1| Transcriptional regulator, LysR family [Vibrio cholerae LMA3894-4]
          Length = 296

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 125/298 (41%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 61  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 121 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATQEYLAQHAPIE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   GI
Sbjct: 180 LPQDLTHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +         L  ++ D   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 234 IRLPCDLANPLLRAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 291


>gi|71064631|ref|YP_263358.1| LysR family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71037616|gb|AAZ17924.1| transcriptional regulator, LysR family [Psychrobacter arcticus
           273-4]
          Length = 311

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 124/295 (42%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +   L  F  V  + SF+  A +  +S S +SR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   TINIQTLLFFIEVFDAQSFSVVARKEGVSASKVSRIIRQLEDSLGQQLFYRNTRAVTPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R    +   +   Q ELQ+ +++P G +RI   +  GQ  +   L +    YP 
Sbjct: 66  AGRVFMRYAKSMTESMSAAQQELQDRTLEPGGLIRINAPVFFGQRHIAPWLPQLSAQYPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI L L +  ID      D   R+   +  S+   R       H  A+P Y+    +  
Sbjct: 126 LQIDLSLTDDFIDPHHYATDVIFRIG-TLNDSAFHARIFGEQTYHLAASPSYISTHGKLQ 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +          F   +    P   P  + L  N+  S++   + G GI
Sbjct: 185 VPADLTHHKCLLYKGSTGPNRWLFKTESEDWTPFLAP--ALLMSNNAESLLVSALKGMGI 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD+++ ++     L++++ +      T    V   YP     +  ++A  ++
Sbjct: 243 VLFPDWLIGEHLKSGELIKLLPNYSTAVKTTPQHVAAIYPHTRHVSLNVRALIDY 297


>gi|152979204|ref|YP_001344833.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150840927|gb|ABR74898.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 302

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 132/295 (44%), Gaps = 13/295 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  +  L +F  VA+  +F+  A +  ++ S ISRQI  LE + G  LFYR  R +TLT+
Sbjct: 5   NTSFHALEIFLAVAKEKNFSEVARRYDVASSVISRQIKQLEDDFGQTLFYRSTRSMTLTQ 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  + +    EL+++  +P+G +RI   +  GQ  +  +L E    YP 
Sbjct: 65  AGERFADYVQNLLGQFDGLCNELRQTDSEPTGTVRINAPVFFGQKHITPHLPELQKRYPK 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI L   +  +D     AD  IR+   +  S+L  + +        A+P +L     P 
Sbjct: 125 LQIHLTQTDDFVDPYSQTADLIIRIAG-LADSNLKMKIIARQRHFLLASPAFLAQFGTPR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L ++  + +   +      F     +    G+P       N+  S+++  V G GI
Sbjct: 184 STDDLPRYQGLFYRGQLGILHWRFGQSGRI--MDGQP---YFVSNNAASLIEMAVKGLGI 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPS--FTVY--FCYPEALKNTGKLKAFRNF 289
            ++PD+ V D   +  LV ++ D    S    +Y     P++      ++A  +F
Sbjct: 239 VMMPDWAVADEIRSGELVPLLTDTPISSDLQEIYIALLTPQSSYRPANVQAVMDF 293


>gi|237731309|ref|ZP_04561790.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226906848|gb|EEH92766.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 294

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 121/289 (41%), Gaps = 9/289 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS + AA  L LS+  +SR +  +E   G +L +R +R LT+T  G      
Sbjct: 12  VFNHICDLGSLSAAARALGLSRPMVSRYLDEMEKWAGARLIHRSSRRLTITPAGEDALVK 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           T  +                 PSG LR+A       ++L   L  F+  YP ++I++ ++
Sbjct: 72  TRSLAQLSLDIGAASAAQI--PSGTLRVACAHFTAMHILAPVLPTFMAQYPQLRIEVEIN 129

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ + +  +  D AIR+    +  + I R+L        A+  YL     P +I +L +H
Sbjct: 130 NQPVSLVGERIDVAIRITDNPEPGT-IARRLGDCKSVLCASADYLHQHGTPETIDDLTRH 188

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + +        + +++L    +P+       L       + +  V G GIAL+P+   
Sbjct: 189 NCLYYSGF---AGQSWHFLDPQGQPVSVAIKGNLSAGISSLLCESAVAGMGIALVPELEA 245

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +   +   L+R++ ++      +Y  Y         L+   + +    R
Sbjct: 246 QEGLEQGKLIRLLPELQPKCLPIYGLYLSREHQPAGLRLLLDTLSEAQR 294


>gi|53722277|ref|YP_111262.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76817440|ref|YP_335414.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126444710|ref|YP_001062769.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126457975|ref|YP_001075720.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134283688|ref|ZP_01770386.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167819915|ref|ZP_02451595.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167922904|ref|ZP_02509995.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217418385|ref|ZP_03449892.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|242311095|ref|ZP_04810112.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254183613|ref|ZP_04890205.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254191094|ref|ZP_04897599.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254193404|ref|ZP_04899838.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254263102|ref|ZP_04953967.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254301752|ref|ZP_04969195.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52212691|emb|CAH38722.1| putative LysR family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|76581913|gb|ABA51387.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|126224201|gb|ABN87706.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126231743|gb|ABN95156.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|134244870|gb|EBA44966.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|157811741|gb|EDO88911.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157938767|gb|EDO94437.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169650157|gb|EDS82850.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184214146|gb|EDU11189.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217397689|gb|EEC37704.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|242134334|gb|EES20737.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254214104|gb|EET03489.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 335

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+
Sbjct: 1   MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   LE  +   + +   P G LR+     L +  +   L +FL  YP 
Sbjct: 61  DGEAYYRRCVRLIADLEEAEGAFRAA--APRGLLRVNLQGTLARYFVVPALPDFLARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IRLHIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            +  L  H  + +  +     +      TVD  + E R+ + + V          V G G
Sbjct: 178 ELAALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++  +
Sbjct: 236 IVQVPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRER 291


>gi|186475112|ref|YP_001856582.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191571|gb|ACC69536.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 301

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 134/295 (45%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SFT AA+ LH+ +++++  +  +E  +G +L  R  R + LT 
Sbjct: 1   MDRFQEMQVFVRIAERQSFTRAADDLHIPRATVTNLMKRMEARLGARLLERTTRTVRLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   +E  +   +++   P G LR+     L ++ +   L  FL  YP 
Sbjct: 61  DGEAYYGRCVRLLADMEEAEGSFRDA--APKGLLRVNLQGTLARHFVVPALPAFLSRYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL+    P 
Sbjct: 119 IELHIGEDDRLVDLVREGVDCVLRAGN-LQDSSMVGRRVARLEQVTVASPAYLERHGMPC 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           S   L  H  + +  +            TVD  + E ++  +  V          V G G
Sbjct: 178 SPDALAMHCAVNY--VSSATGHALPLEFTVDERVVEVKLEAIVSVTGTDLYSGSAVAGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  +P Y V++     +LV ++     P   V   YP++ + + +++ F  ++  
Sbjct: 236 LVQVPRYRVQNEIAAGSLVVVLPQFPPPPMPVTVLYPQSRQLSSRVRVFAQWLRE 290


>gi|229514464|ref|ZP_04403925.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229348444|gb|EEO13402.1| transcriptional regulator [Vibrio cholerae TMA 21]
          Length = 300

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 124/298 (41%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 5   MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   +  F  L+P 
Sbjct: 65  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVIAFTDLHPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 125 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATQEYLAQHAPIE 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   GI
Sbjct: 184 LPQDLAHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +         L  ++ D   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 238 IRLPCDLANPLLQAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 295


>gi|88798046|ref|ZP_01113633.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
 gi|88779243|gb|EAR10431.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
          Length = 295

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 130/294 (44%), Gaps = 5/294 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D W  L +F  V+R GSFT A+ +L +S S+IS  I  LE ++  +L +R  R L+L
Sbjct: 1   MDRDVWSNLIIFAEVSRQGSFTKASNELGISPSAISHIIRKLEMKLDTRLLHRSTRSLSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TEQG++L        H LE T    Q+S  + SG+++I +     +  +   L  F   Y
Sbjct: 61  TEQGARLLEKLDPSIHSLEETIDGFQDSKEEVSGRIKITSHRVGAEQGIFPKLAAFKTRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ ++L +++  ID      D  IR  + +    +         +   A+  YL+    
Sbjct: 121 PEVSVELDINDGLIDFIAAGFDAGIRRGESLAQDMIAVPLDYDDQLIFVASSEYLQKYGA 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++L +H  I+F  +    +  +  L+           S L +N    +++  + G 
Sbjct: 181 PQLPEDLTQHQTISFRYVTSGRLFPWP-LSHAGETSTYVPSSKLVLNDTGLLVKAVLDGF 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +    V D   +  L+ ++ D  T     Y  +         L+AF +F+
Sbjct: 240 GIGCVTQQQVVDYLKSGALIEVLSDYRTSIARNYLYFSGRRHVPTALRAFVDFM 293


>gi|291619369|ref|YP_003522111.1| LtrA [Pantoea ananatis LMG 20103]
 gi|291154399|gb|ADD78983.1| LtrA [Pantoea ananatis LMG 20103]
          Length = 303

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 131/296 (44%), Gaps = 16/296 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  V  SGSF+ AA  L ++ SS+SR I  LE  + + LF R  R L +TE G +++
Sbjct: 14  LVLFVQVVESGSFSSAARALSMTPSSVSRMIDRLEKRLNVLLFTRSTRALAVTEAGQEIY 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V    ++   +    S  P G LRI     LG+ LL   L  FL  Y +I I+L 
Sbjct: 74  HQALSVIAATKSLFSQADSYSDVPKGLLRITAPTTLGKILLTPFLPGFLRRYAEINIELN 133

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  I+++ +  D A+R+       +++ R L+ +      A HY  + R P    +L 
Sbjct: 134 LTDHLINLTHESYDLALRVTD-TPPINMVARALMPVDYVLVCAEHY--DQRLPDMPGDLK 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HN I F D      E   WL   D          L +N+  +++   + G GIAL+P +
Sbjct: 191 QHN-IFFPDDAQFRGEWRFWLN--DTMESVTLTPRLMINNSDAMIDAILQGVGIALIPTF 247

Query: 248 IVKD---NPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRN----FIFLK 293
           I      N  L R++ D     T S T Y           K + F +    ++  K
Sbjct: 248 IANGYLLNGQLRRVLPDWRIENTLSMTTYAITLPNRLLPLKTRVFIDDFMAWLKAK 303


>gi|238024657|ref|YP_002908889.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879322|gb|ACR31654.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 341

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 120/296 (40%), Gaps = 4/296 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +RVF  V  +GSFT AA  L+ +  + SR ++ LE  +  +L  R  R L+LT  G
Sbjct: 3   TLQNMRVFARVVEAGSFTAAALSLNSTTGATSRAVTELEARLRTRLLNRSTRRLSLTPAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      ++   +   + E   +  +PSG LR+ +   +GQ+ +   L  +   +  + 
Sbjct: 63  ERYLLRCRQILADVGAAEEEASRAHERPSGVLRLHSFASIGQHYVMPALTRYRERHHGVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L  +  D+    +D A+     +  S L+   L        A+P YL+    P S 
Sbjct: 123 VELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHCLGETFSILCASPSYLRERGAPSSP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+ +           D+   +   +         +Q N+  S+      G GI +
Sbjct: 183 SELVDHDCLML-QTPAFATHDWLLESRTGQVEQIRVRGPVQTNTAESLAIAIRDGIGIGM 241

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LP Y       + +L+R++         +Y  YP       K++ +  F+     D
Sbjct: 242 LPLYAAIGLLRDGSLMRVLPAHTLQRMRIYALYPSRRFVDAKVRTWVAFLRADLPD 297


>gi|288549651|ref|ZP_05967718.2| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317768|gb|EFC56706.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 308

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 121/287 (42%), Gaps = 9/287 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E   G +L  R  R LTLT  G K+ +
Sbjct: 12  QVYNRICELGSLSAAARALGISRPMVSRYLEQMEKWAGTRLVNRSTRKLTLTAAGEKVLQ 71

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            T  +    +  +   Q +   P+G LR+A        ++   L   L  YP ++I+L +
Sbjct: 72  KTRTLSQISQEIED--QSAKDSPTGTLRVACAHFTAMQIISPVLPGLLARYPQLRIELDV 129

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N  + +  +  D AIR+    +   +I R+L        A+P YL     P  ++EL +
Sbjct: 130 NNHPVSLVGERIDVAIRITDNPE-PGMIARRLGECDSVLCASPRYLAEAGTPQQLEELMQ 188

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN + +        + + +++     +       L  +    +M+  +   GIA+LP+  
Sbjct: 189 HNCLHYSFF---AGQSWRFVSPQGELVSTAVSGNLSASISSLLMEAAINHCGIAMLPERE 245

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +D      LV ++      +  ++  Y          + F + +  
Sbjct: 246 ARDALQTGQLVPVLSAYTPKAIGIFGIYQSRDYQPAAQRVFLDALAA 292


>gi|222106214|ref|YP_002547005.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221737393|gb|ACM38289.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 299

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 127/298 (42%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D+  L+VF + A   +F   A +L ++ +++SR I+ LE ++G++LF R  R + LT
Sbjct: 1   MN-DYKALKVFLLAAEKRNFAQVARELDMTPAAVSRAIAALERDLGVQLFVRTTRQVALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+            L++ + +++ ++    G+LRI+     G+ +L   L  F  LYP
Sbjct: 60  TDGAIFAAQVQPAVTALDSARRDIRNANKSDEGRLRISVPTWFGKAMLPPILSGFRTLYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +  ++ L +  ++I  D  D AIR+         I RK+  +     AAP       + 
Sbjct: 120 KMSFEISLSDGLVNIVDDDYDLAIRISSQPSDKFTIWRKIHIVRRILVAAPA--SKFVDM 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               EL   + + +     +     NW L+     +          NS   +      G+
Sbjct: 178 RHPGELTPDDCLAYSGESRR----ENWVLSDGGSSMTISAGGAFSANSGEVLADMAADGA 233

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+A+LP + V ++     LV ++     P   +   YP       ++ +F  F   + 
Sbjct: 234 GVAMLPGFHVSEHLKTGRLVHVLRGWSPPDLWLTLYYPPYQALPPRIASFSKFFEEQV 291


>gi|73537658|ref|YP_298025.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72120995|gb|AAZ63181.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 323

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 138/293 (47%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  V  +G F+ A  Q  +++S +SR+++ LE  +G++L +R  +   LT  G 
Sbjct: 25  LDDLLLFIHVVDAGGFSAAERQTGIAKSRLSRRVATLERALGVRLLHRSGQVFGLTPVGE 84

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +     E    ++      + +  +PSG + + T++ + +  L   L EF   +P +Q+
Sbjct: 85  AVLAHAREAATHVDKIGALTRSAVAEPSGVIHLHTSMLIAETTLPPILAEFARAHPGVQV 144

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           QL L N+ +D++ +  D  IR    P+ S  ++   + T      A P  L+    P  +
Sbjct: 145 QLTLSNRFVDLAEERLDLVIRAAVVPLASEDVVAVPVATSASIVVAHPSLLEADGPPARL 204

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  +  +  G L       + ++   D+PI       + V++ L+I +  + G+G+A 
Sbjct: 205 DELAGYPCLAQGTLTNP--RPWQFIDADDKPIDIAVTPGIAVDNLLAIRELALRGAGMAQ 262

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP Y+ +   D   LV +++ V +   T+Y  YP     T  ++ F + +  +
Sbjct: 263 LPSYLCQDAIDAGMLVPVLQGVRSRPATLYAMYPSRRGMTSAVRVFLDLVRTR 315


>gi|153801940|ref|ZP_01956526.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|124122515|gb|EAY41258.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
          Length = 307

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 124/298 (41%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 12  MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   +  F  L+P 
Sbjct: 72  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVIAFTDLHPQ 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 132 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATQEYLAQHAPIE 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   GI
Sbjct: 191 LPQDLAHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +         L  ++ D   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 245 IRLPCDLANPLLQAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 302


>gi|257454513|ref|ZP_05619771.1| LysR-family transcriptional regulator [Enhydrobacter aerosaccus
           SK60]
 gi|257448075|gb|EEV23060.1| LysR-family transcriptional regulator [Enhydrobacter aerosaccus
           SK60]
          Length = 282

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 133/292 (45%), Gaps = 22/292 (7%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L+VF  +   GSFT AA+ L +S +  S+ +  LE  V  KL +R+ R L+LTE
Sbjct: 1   MDTLKSLQVFRTIVEKGSFTKAADALDMSLAMTSKHLQHLEAYVQAKLLHRNNRNLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +         L+  + +  + SV P GKLRI   +          L +F   YP 
Sbjct: 61  VGQQYYAEAVHALDILQQAKTKAHDGSVLPEGKLRIIAPVWFATPYFVNLLAKFQQDYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L+N+  D+  +  D A+R+    Q  +LI + L  I  +  A+P +L     P 
Sbjct: 121 IELTVDLENRFTDLIAEGYDLALRVVNTPQD-NLIVKPLGKIDFYYVASPRFLAQHEPPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L           +P  + ++  +AT  +P           N+ + + Q  + G G 
Sbjct: 180 SAEALSN---------LPGILPNYTHMATTLKPYN-------SSNNTVMMAQMALTGMGA 223

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP+++++D      LV++ E     S ++Y  Y        K++   +F+
Sbjct: 224 AILPEWLIEDEIAQGRLVKLFEQ-PFSSVSIYAIYMNRAFLNLKIRLLIDFL 274


>gi|238796592|ref|ZP_04640099.1| Glycine cleavage system transcriptional activator [Yersinia
           mollaretii ATCC 43969]
 gi|238719570|gb|EEQ11379.1| Glycine cleavage system transcriptional activator [Yersinia
           mollaretii ATCC 43969]
          Length = 298

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 129/295 (43%), Gaps = 17/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G  
Sbjct: 2   NALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQS 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    E++  +     +LQ  S    G L ++         L   L  F   YP I ++
Sbjct: 62  YYLDIKEIFTSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNAAYPGIDVR 119

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +++ D   D  D AI   +    + L   +L    +    AP  L          +
Sbjct: 120 IQAVDREEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPSLLMGEHGLKIPAD 178

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
           L  H L+             +W+A   R +G P+I+  Q    +    ++Q  V G GIA
Sbjct: 179 LAYHTLLH-------DTSRRDWMAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIA 230

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+ + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 231 LVNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 285


>gi|221213322|ref|ZP_03586297.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221166774|gb|EED99245.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 346

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 123/294 (41%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G 
Sbjct: 50  LNALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGR 109

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +  ++   SG L I+ T       L   L +F    PD+ +
Sbjct: 110 DYLPPVRNAFRQIADASQRVSGAAD--SGVLTISVTPFFASAWLVPRLAQFRDACPDVDL 167

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  +   D + D  D AIR     + + L    L+T+ + A A+P  +     P +  
Sbjct: 168 QIVTSHALADFARDGVDVAIRHGLG-RYAGLCSEHLLTVEIVALASPELVARLGMPRTPA 226

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L         D   K    +     +D   G PR      +    ++Q  V G G  LL
Sbjct: 227 DLVDWP--HLHDAERKGWHIWFDAQRID-DFGAPRGPAF--DDAGLLLQAIVAGQGAGLL 281

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V+    N  LV++ +      F  Y  YP       K+ AFR +I   AR
Sbjct: 282 PAAMVRGELANGRLVQLADVARLDDFAYYLVYPPHHAERPKVAAFRRWILDAAR 335


>gi|319783672|ref|YP_004143148.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169560|gb|ADV13098.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 308

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 123/292 (42%), Gaps = 5/292 (1%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    L V   VAR G F  AA +L +S S++S  +  +E  +G  LF R  R ++L
Sbjct: 1   MDRDLLPHLPVIVAVARRGGFALAAAELGMSPSAVSHAVRIVEERIGQPLFARTTRSVSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G  L    +     +      ++    +PSG LRI  +       +   +      Y
Sbjct: 61  TEAGKALVETAAPALQDIAERMDRIRSVKGRPSGLLRINASNIAIPLAVTPVVAAMAERY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ +++  D   +DI  +  D  IRL + I    +  R      +   A+P Y+     
Sbjct: 121 PEVTVEVFADQGLVDIVGEGFDAGIRLGEMIAQDMVAVRLTPPFSVVIVASPAYIGRHGR 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+ +L  HN I +  +    +  ++ +        E R S +  +S L+ +   + G 
Sbjct: 181 PSSVADLANHNCIGYRLVRSGALYRWDLIEDGKDIAMETRGSVVVTDS-LAAIDLALAGV 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A + + + + +     LV+++         ++  +P       KL+AF +
Sbjct: 240 GLAYVFEPLARADLAAGRLVQVLPQTAIEEPGLFLYFPRRASMAPKLRAFID 291


>gi|260545903|ref|ZP_05821644.1| transcriptional regulator [Brucella abortus NCTC 8038]
 gi|260754136|ref|ZP_05866484.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260757356|ref|ZP_05869704.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260883161|ref|ZP_05894775.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|297247758|ref|ZP_06931476.1| LysR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
 gi|260097310|gb|EEW81185.1| transcriptional regulator [Brucella abortus NCTC 8038]
 gi|260667674|gb|EEX54614.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260674244|gb|EEX61065.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260872689|gb|EEX79758.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|297174927|gb|EFH34274.1| LysR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
          Length = 294

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 8/288 (2%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V   G+ + A      S +  S +I  LE  +G++LF R  R LT TE G   +    +
Sbjct: 2   RVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRVFYDGALK 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +   ++  +  + E +  P G +RI   +  G+ L+   + EF   YPDI+++L L + +
Sbjct: 62  ILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYPDIEVRLRLSDHE 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL--DKHN 190
           +DI  +  D A +L   +++S+L  R ++       AAP YL+    P S + L  D+H+
Sbjct: 122 VDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPEALLSDRHH 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            +      P   E +  L T +             +    + Q+ + G GI   P + VK
Sbjct: 181 CLLL--RFPGSKEYYWLLQTPEGLRKFEVTGPYGSDDGDVLTQWALGGRGIINKPLFEVK 238

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 239 EYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 286


>gi|262043221|ref|ZP_06016355.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039403|gb|EEW40540.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 342

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 124/291 (42%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R +  +  +GS + AA Q+  +Q+++SR++  LE  +G+KL  R    + LT+ G 
Sbjct: 41  IELMRTYIRIVEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKLILRTTHAMKLTDDGE 100

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +R   +V       + +L+ +  +P G LR+      GQ  L   L  FL  +P + +
Sbjct: 101 RCYRHARQVVDAWLALEDDLRIADDRPVGVLRVRAPHAFGQQQLLAPLVAFLQRHPQLSV 160

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L++  +D   D  DCAIR+   +   + +   L  +     A+P  L       S++
Sbjct: 161 EWMLNDNTVDFLSDNIDCAIRVGAEV-DPATVSVLLAEVPRCVVASPELLAKYPPLTSLE 219

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     I         +   +      + +      CL  +S        + G G+A++
Sbjct: 220 ALSGLPWIAINTFYQHEVRLRH--QASGQIVSTAITPCLSTDSLYVARNTALAGLGVAMV 277

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             + V ++     L+ +       S  V+  YP A   T +L+ F + +  
Sbjct: 278 SSWTVMEDIAAGRLIELFPQWRPASLPVHLVYPWARYYTTRLRKFLDLMRE 328


>gi|157372495|ref|YP_001480484.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157324259|gb|ABV43356.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 298

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 133/294 (45%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  SGS T AAEQL  + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKITLEELLAFTTVVDSGSITAAAEQLGQTTSGISRALSRLEKKLDTTLMRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        E+ + +E  + ++    + P+G+LR+       ++++   +  F   YP
Sbjct: 61  EEGQSFLGHAREIINSVENAEEQMALRRLIPAGRLRVNAAAPFMEHVIVPLVAGFRQSYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  DN  ID+     D AIR+   ++ S++  R L    +   A+P YL     P
Sbjct: 121 QIELELNTDNLIIDLLEKRTDIAIRIGA-LRDSTIHARLLGASRLRILASPDYLARYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++ L  H+L+ F       +    +       I       +  +S  ++ Q  + G G
Sbjct: 180 ASVEALRDHSLLGFTQPESLNLWPLRYQQAQHFAI----TPTISASSGETLRQLALRGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L D++ +D+     LV ++E D +     +   Y    +   ++  F +++
Sbjct: 236 IVQLADFMTRDDQRSGRLVPLLEQDTLDVRQPINAVYYRNTQLAARITCFLDYV 289


>gi|158424745|ref|YP_001526037.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158331634|dbj|BAF89119.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 321

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 127/299 (42%), Gaps = 10/299 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + VF  V   GSF  AAEQL L  +S+SR++  LE  +G++L +R  R +  +E G 
Sbjct: 4   LDDVEVFLRVVDRGSFNGAAEQLGLPPTSVSRKVKALEDRLGVQLLHRTTRRVWPSEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   +    L+     ++  + +P G L++      G  +++  L  F   YP +Q+
Sbjct: 64  AYYQKCVDAIAALDHADASIRALTQEPEGHLKVLLPHSTGILIVEPELANFRRRYPKVQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + LDN  +D+     D A+RL  P++ SS   R L +  +   A+P YL     P   +
Sbjct: 124 HITLDNHPLDLIEHGFDVAVRLG-PVRDSSYHVRNLGSQQLIFLASPDYLDEFGRPSHPR 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243
           EL  H++I     +        W         E R+S  L  N  +  ++      GI +
Sbjct: 183 ELADHDIIA----VRTSPGPLVWQLDGPSDSFEMRVSPALDTNDAIMAVRQASGACGITM 238

Query: 244 LPDYIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           L   + +   ++  L  ++              +P       K++ F +F+      W+
Sbjct: 239 LSRCMSRRRVESGELEVVLPGWQRRDPVEQVAIFPARATLDLKVRVFVDFLVDAYNRWQ 297


>gi|229589780|ref|YP_002871899.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361646|emb|CAY48526.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 313

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 127/296 (42%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +    V+   G++T AA +L +S+S++S++IS LE   G +L  R  R + LT+ G 
Sbjct: 10  WTHIHWLSVLQEQGTYTAAAARLGVSKSAVSQRISDLEKATGTRLVTRTTRSVRLTDAGL 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L R     Y ++  +   +++S+ +  G +R+   +   +  L  +L EFL  YP ++I
Sbjct: 70  SLTREVRSAYEQIARSFSSVRDSAGEIRGLVRLTAPVAFARQQLVPHLSEFLQQYPQVRI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + +    ++ +  D A+R    +  +  +  KL        A   YL+   EP    
Sbjct: 130 QLDVSDALSSLAAEGYDLAVRHGFQVPETH-VAWKLCDTGSVLVATRDYLQRHGEPREPG 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +     +    F   +     +  P       N+  ++    +   GIALL
Sbjct: 189 DLSAHNCLFYPRGTDQPAWTFERGSKNVERLTVPIAGSFATNNSEALRDSALNHLGIALL 248

Query: 245 PDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PD+       +  LV+++ D          +Y   P +      + A  +++  K 
Sbjct: 249 PDFSAHAALASGTLVQVLTDWTLKGAFADEIYLIRPYSPHVPKSVSALVSYLKEKL 304


>gi|227356652|ref|ZP_03841038.1| LysR family transcriptional regulator [Proteus mirabilis ATCC
           29906]
 gi|227163160|gb|EEI48091.1| LysR family transcriptional regulator [Proteus mirabilis ATCC
           29906]
          Length = 297

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 140/296 (47%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++R F  V  +GSFT AA+ L LS+S +S  I  LETE+ + L  R+ R  TLT
Sbjct: 1   MQNQIDRIRSFIAVVDTGSFTQAAKYLRLSKSMVSIHIKALETELNVSLLNRNTRRFTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L++   +V  +LE T  + +       G LR+ +T + G++ +   L +F+ L+P
Sbjct: 61  ETGEILYQDFRQVLVQLEQTLDKARLGQQNLQGTLRLTSTAEFGEHYILPLLHQFMCLHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q I ++   D+     D AIRL   ++ S+   RKL    +    +PH LK     
Sbjct: 121 QLKVQYIFNSSIDDLINHKLDLAIRLGA-LKDSNYRYRKLADYTIKLVVSPHLLKKY-PI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I +L     +   +L    +   + +  +   +    ++  + N+  ++ Q  +   G
Sbjct: 179 QEIADLAAVPYLANSNLRHSKLSQQDKINQLFSQLHS--MALFETNTISALKQMALKQMG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +LP++ ++       LV  + ++   + ++   +P       K + F +F+  +
Sbjct: 237 MTILPEWYIQQEITQGELVSPIPELTLLNQSISVIFPHGEHMPRKTRLFIDFLKER 292


>gi|296389531|ref|ZP_06879006.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 300

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 143/287 (49%), Gaps = 5/287 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +++   VA + SFT AA  L L+QS +SR I  LE E+G++L +R  R ++LT  
Sbjct: 1   MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  +LE  +  L +    PSG L+I T   LG+ ++   L+E    YP +
Sbjct: 61  GQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRRYPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI+  + ++ +D++ +  D A+RL + +    LI R L  +     A+P YL++   P  
Sbjct: 121 QIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRSHGTPER 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  HN  T  DL    + ++       +P+       L ++   +++   ++G GI 
Sbjct: 180 LEQLAGHNCPTVRDLHTGKLLEWQ-FQRDGQPLSLAVRGDLVLDVADALVDAALVGQGIV 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +  ++ ++      LVRI++    P   V   YP + + + K+ A 
Sbjct: 239 QVMGFMAEEAIRRRRLVRILQPFEPPLCPVSLIYPPSRQCSLKIGAL 285


>gi|161523594|ref|YP_001578606.1| DNA-binding transcriptional activator GcvA [Burkholderia
           multivorans ATCC 17616]
 gi|189351637|ref|YP_001947265.1| DNA-binding transcriptional activator GcvA [Burkholderia
           multivorans ATCC 17616]
 gi|160341023|gb|ABX14109.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189335659|dbj|BAG44729.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia multivorans ATCC 17616]
          Length = 348

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 131/306 (42%), Gaps = 18/306 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      R F   AR  +F+ AA++L ++  ++S Q+  LE E+G+KLF R+ + 
Sbjct: 1   MDLRQLPALNAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEDELGVKLFTRNGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           L LT+ G +  +        L     +++ S      +L ++         +   +  F+
Sbjct: 61  LCLTDAGMRYAQQVRTALMMLADATRQVRASDRDR--RLVVSMLSSFAARFVTPRIGTFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P+I ++L   N   D + D  D AIR         L    L+        AP  L  
Sbjct: 119 ERHPEIDVELQSTNALTDFARDDVDLAIRFGFG-SYPGLYVEPLLDEAFFPACAPT-LNG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L  +NL+   D + +   D   L T    + EP+   L  +S   ++Q  +
Sbjct: 177 GKLPQTPADLVHYNLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSSN-LLQAAI 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIAL+   +      +  LVR+ +      +  +F  P  L  T +++AFR +I  +
Sbjct: 232 EGQGIALVRRSLALHDLLDGRLVRLFDIDGPSPWHYFFVCPPPLLGTPRVQAFRTWILQE 291

Query: 294 ARDWKF 299
              +K 
Sbjct: 292 VAQFKL 297


>gi|294851074|ref|ZP_06791750.1| hypothetical protein BAZG_03207 [Brucella sp. NVSL 07-0026]
 gi|294821717|gb|EFG38713.1| hypothetical protein BAZG_03207 [Brucella sp. NVSL 07-0026]
          Length = 308

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 135/285 (47%), Gaps = 7/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ RKLV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARKLVDYTLCLYAHRSYLEENGTPK 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L++H LI + + +       N        I        +V+S L  ++    G+GI
Sbjct: 194 SPEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGI 248

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 249 GILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 292


>gi|254239425|ref|ZP_04932747.1| hypothetical protein PA2G_00038 [Pseudomonas aeruginosa 2192]
 gi|126192803|gb|EAZ56866.1| hypothetical protein PA2G_00038 [Pseudomonas aeruginosa 2192]
          Length = 304

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 135/298 (45%), Gaps = 13/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D L  F V+   GSFT AAE+L  S+  +S++I  LE ++G+ L +R  R L+LT  G
Sbjct: 3   DLDDLAAFAVLHDLGSFTRAAERLGCSKGQLSKRIGVLEQKLGVTLLHRTTRRLSLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +  + E  +  +     +  G++R+   + LG+ L    L++F   +P ++
Sbjct: 63  AALLPEAQALLVQAERARQAVARLQERAEGRVRVTLPVSLGETLFDALLEDFQECHPLLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N   D+  +  D AIR     Q + L+ R L  +     A+P YL    EP   
Sbjct: 123 VELDLYNGLRDLVGEGFDLAIRSGVE-QDARLVARPLFVLQEITCASPAYLARHGEPQRP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL +   +    L         WL      +   R++  L  N Y  + +  + G+GIA
Sbjct: 182 AELAERECL----LNSHYSGHEEWLYHRHHRLERVRVAGFLASNHYSLLKKAALAGTGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LP Y+V D   +  L  ++ D  T S  ++  +P       + +   +++     DW
Sbjct: 238 RLPSYMVHDELGDGRLAWLLRDYQTRSTPMFLVHPFQGGLPRRTQVLADYLL----DW 291


>gi|116050005|ref|YP_791182.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218891987|ref|YP_002440854.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|115585226|gb|ABJ11241.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218772213|emb|CAW27992.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 300

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 143/287 (49%), Gaps = 5/287 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +++   VA + SFT AA  L L+QS +SR I  LE E+G++L +R  R ++LT  
Sbjct: 1   MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  +LE  +  L +    PSG L+I T   LG+ ++   L+E    YP +
Sbjct: 61  GQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRRYPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI+  + ++ +D++ +  D A+RL + +    LI R L  +     A+P YL++   P  
Sbjct: 121 QIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRSHGTPER 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  HN  T  DL    + ++       +P+       L ++   +++   ++G GI 
Sbjct: 180 LEQLAGHNCPTVRDLHTGKLLEWQ-FQRDGQPLSLAVRGDLVLDVADALVDAALVGQGIV 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +  ++ ++      LVRI++    P   V   YP + + + K+ A 
Sbjct: 239 QVMGFMAEEAIRRRRLVRILQPFEPPLCPVSLIYPPSRQCSLKIGAL 285


>gi|307944428|ref|ZP_07659768.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307772177|gb|EFO31398.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 303

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 131/287 (45%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V     F+ AA ++  S++ +S+ +  LE E+G +L  R  R ++LTE G   +
Sbjct: 7   MRCFIQVVDQKGFSAAAREMERSKALVSKYVGELEDELGARLLNRTTRQVSLTEVGHAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+  +L+  Q  ++ S     G+LRIA    +G +L+   + +FL   PD+ + L 
Sbjct: 67  KEALEILQRLDDLQASVRSSHQAVRGRLRIAAPRSMGDDLINQAVMDFLTQNPDVTVDLR 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D A+R+ + +  SSLI R++        A P  +     P    +L 
Sbjct: 127 LEDRFVDLVEEGFDLAVRVTE-LADSSLIARRIAPFRTVVCATPEVVDKHGVPSVPADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               I   D   +  +++ +    +R         ++VNS  +     +   G    P  
Sbjct: 186 SRPCII--DTNYRYKQNWAFSQNGERTSVSVN-GPIEVNSASAARSAALSHLGYLRTPLI 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            V +      L+ ++ED       +Y  YP     TGK++AF +F+ 
Sbjct: 243 FVSNEVAAGKLLLLLEDYEQSMPGIYAVYPHRRHLTGKVRAFVDFLV 289


>gi|221197187|ref|ZP_03570234.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203859|ref|ZP_03576877.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176025|gb|EEE08454.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183741|gb|EEE16141.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 306

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR I+ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVELRSFTRAADMHGLARPVVSRAIAELEARFGGRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L+  + E Q  + +P G LR+        N     +  F   +P 
Sbjct: 61  TAERIYERCAAVLDELDALEAEAQTQTREPDGLLRLVAHTTAALNQFVPLIAGFKAAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I + L  + +D+  +  D  I     + S + I R +  I     A P YL+    P 
Sbjct: 121 VRIDVTLTERPVDLVGEGYDIGIVAPYMLSSDTTIVRLIARIPFVIVATPAYLRAHGNPT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  +     + +    F     V   +  P    +  NS +   +  + G GI
Sbjct: 181 TPADLADHPFVPLSPSLRRPALSFRVDGDV---LTLPLRFDISSNSPVFNREMVMHGFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +V+    +  LV++++D         +   Y        K+KAF ++
Sbjct: 238 GIVPRTLVETELASGALVQLLDDADLVDGCVELKLAYANRSLLPAKVKAFIDY 290


>gi|33597522|ref|NP_885165.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33573950|emb|CAE38268.1| probable LysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 304

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 132/296 (44%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AAEQL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 5   MKTTLDELQAFVAVVDTGSITAAAEQLGLTVSAASRTLGRLEEKLQTTLVRRTTRRLELT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+   +    +   ++  + ++    ++P+G+LR+        ++L   +  F   YP
Sbjct: 65  EEGAAFLQHARAILASVDEAEEQMAARRMRPAGRLRVDAATPFMLHVLVPLIAGFHARYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  +   +D+     D A R+   ++ S+L  R + T  +   A+P YL+    P
Sbjct: 125 EVELELNSNEGIVDLIEKRTDVAFRIG-VLKDSTLHARAVGTSRLRVLASPAYLERRGAP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H L+ F    P+ + D+  L   D  +   R   +  +S  ++    + G G
Sbjct: 184 TRTAQLAQHALLGFTQ--PETLNDWP-LRDADGTVLRIR-PTIASSSGETLRHMALAGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L D++  ++     LV++           V   Y        ++  F + +  
Sbjct: 240 IVCLSDFMTGEDRRAGALVQLFARQTLDVRQPVNAVYYRNTALAARITCFVDHVIE 295


>gi|33600067|ref|NP_887627.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33567665|emb|CAE31579.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 314

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 61/291 (20%), Positives = 119/291 (40%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  V R G F  A   L++ +S +SR+++ LE  +G++L +R +R  ++T  G
Sbjct: 14  NLNDLYYFVQVVRHGGFAQAGRLLNIPKSRLSRRVAALEERLGVRLVHRSSRSFSVTHIG 73

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +    E  Q  +     +P G LR+     L Q  L   +  F++  P + 
Sbjct: 74  QEYYAQCQAMLAGAEAAQEVIDRVHAEPQGILRVTAPPALIQGALAQLVARFMIQCPKVH 133

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D A+R+R  P++SS L+ + L        A+P  L        
Sbjct: 134 VHLKSLNRPVDVLSEGFDLAVRVRFGPVESSDLVMKPLGVARQRLVASPRLLARGAAIRG 193

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +   +  G  + +   D        R         L  +   ++    + G G  
Sbjct: 194 PEDLARLPSVALGTDLREGRWDLE--DDQGRRFAVALRPRLATDDATALKAAVLAGVGAG 251

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP  +V++      LV + E        V+  +P        ++    F+
Sbjct: 252 VLPLVMVREELRAGTLVALCEPWQPAPGQVHAVFPSRRGVMPAVRELLEFL 302


>gi|221199890|ref|ZP_03572933.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221207441|ref|ZP_03580450.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221172644|gb|EEE05082.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221180129|gb|EEE12533.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 348

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 131/306 (42%), Gaps = 18/306 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      R F   AR  +F+ AA++L ++  ++S Q+  LE E+G+KLF R+ + 
Sbjct: 1   MDLRQLPALNAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEDELGVKLFTRNGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           L LT+ G +  +        L     +++ S      +L ++         +   +  F+
Sbjct: 61  LCLTDAGMRYAQQVRTALMMLADATRQVRASDRDR--RLVVSMLSSFAARFVTPRIGTFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P+I ++L   N   D + D  D AIR         L    L+        AP  L  
Sbjct: 119 ERHPEIDVELQSTNALTDFARDDVDLAIRFGFG-SYPGLYVEPLLDEAFFPACAPT-LNG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L  +NL+   D + +   D   L T    + EP+   L  +S   ++Q  +
Sbjct: 177 GKLPQTPADLVHYNLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSSN-LLQAAI 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIAL+   +      +  LVR+ +      +  +F  P  L  T +++AFR +I  +
Sbjct: 232 EGQGIALVRRSLALHDLLDGRLVRLFDIDGPSPWHYFFVCPPPLLGTPRVQAFRTWILQE 291

Query: 294 ARDWKF 299
              +K 
Sbjct: 292 VAQFKL 297


>gi|167625686|ref|YP_001675980.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167355708|gb|ABZ78321.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 316

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 141/292 (48%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + + +F+ +  +GS   AA+ L+L +S++SR++  LE E+G+KLF+R +R +TLT  
Sbjct: 1   MKTEDIALFHRIVETGSLVEAADILNLPKSTLSRRLQALEDELGVKLFHRQSRAMTLTAS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +  T+ +   LE T  EL     + +G LRI          +   + EF+ L+P++
Sbjct: 61  GSHFYDKTTSMLATLEQTLSELSGEESEVTGHLRILIFPVPELTHITHAIFEFMDLHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I+  +  D+  +  D A  L      + ++ R +++  +H +A+P YL     P S
Sbjct: 121 TVEIIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHIISETVHFFASPEYLAKAGRPTS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +HN I F     +   D       DR +       L VNS  + ++  ++G GI+
Sbjct: 181 PDELPQHNSILFRYPNGRIFNDVP--FGKDRTLSVK--GNLCVNSLATCLEATLMGRGIS 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++P    K++     L  + EDV       +  YP     +   + F +++ 
Sbjct: 237 MMPLPFAKEHIESGELEMLFEDVEPYEGKCFLVYPSRRFISLASQRFIDYMM 288


>gi|312960287|ref|ZP_07774798.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311285509|gb|EFQ64079.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 340

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 124/296 (41%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +    V+   G++T AA +L +S+S++S++IS LE   G +L  R  R + LT+ G 
Sbjct: 38  WTHIHWLSVLEEQGTYTAAAARLGVSKSAVSQRISDLEKATGTRLVTRTTRSVRLTDAGL 97

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L R     Y ++      +++S  +  G +R+   +   +  L  +L EFL  YP ++I
Sbjct: 98  SLTREVRSAYAQIARGFSSVRDSVGEIRGLVRLTAPVAFARQQLVPHLSEFLQQYPQVRI 157

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + +    ++ +  D A+R    +  +  +  KL        A   YL+   EP    
Sbjct: 158 QLDVSDALSSLAAEGYDLAVRHGFQVPETH-VAWKLCDTGSVLVATQDYLQRHGEPREPG 216

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +     +    F         +  P       N+  ++    +   GIALL
Sbjct: 217 DLSAHNCLFYPRGTDQPAWTFERGGKNLERLTVPIAGSFATNNSEALRDSALNHLGIALL 276

Query: 245 PDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PD+       +  LV++++D          +Y   P +      + A   ++  K 
Sbjct: 277 PDFSAHAALASGTLVQVLKDWTLKGAFADEIYLIRPYSPHVPKSVSALVGYLKQKL 332


>gi|307293670|ref|ZP_07573514.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306879821|gb|EFN11038.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 302

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 126/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L +F  VA  GSFT AAE L +++   S  +  LE  VG++L +R  R + LTE G
Sbjct: 3   DLEPLLIFTRVADMGSFTRAAESLGIAKGRASTAVRDLEAAVGVRLLHRTTRNVQLTEDG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H    ++    +              G+LR+    ++ +  +   L  FL+ YPD++
Sbjct: 63  RAFHARARDLLAASDDLYSMFAGDRAALRGRLRVDLPTEIARTAIMSALPTFLVAYPDLE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC +R+  P+   +L+   +  + M   A+P YL     P S 
Sbjct: 123 LELSSTDRQVDLVQEGFDCVLRIG-PVGDETLVALPVGKLRMVNVASPAYLARHGVPRSF 181

Query: 184 QEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++L   +H ++ +   +      + +     R    P    L VNS  +     + G G+
Sbjct: 182 EDLMRQQHRMVHYSRTLGAKPYGWEYPDGNGRYATVPLSGALHVNSVQTYEAAGLAGVGL 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                  V+   ++  LV I+ D+      + F        + +++ F  +
Sbjct: 242 IQAALPGVRQHLESGALVEILPDLRPEPLDMAFVVAHRSNLSRRVRTFITW 292


>gi|208821925|ref|ZP_03262245.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4042]
 gi|208742048|gb|EDZ89730.1| glycine cleavage system transcriptional activator [Escherichia coli
           O157:H7 str. EC4042]
          Length = 305

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE   G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEVFFGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAKHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|300724816|ref|YP_003714141.1| transcriptional regulator [Xenorhabdus nematophila ATCC 19061]
 gi|297631358|emb|CBJ92053.1| transcriptional regulator (postitive) of cleavage of glycine (LysR
           family) [Xenorhabdus nematophila ATCC 19061]
          Length = 308

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 122/293 (41%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S Q+  LE  +G+KLF R  R L LTE G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQMKSLEDFLGLKLFRRRNRSLLLTEDGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++ +       L   L  F   +P I +
Sbjct: 68  SYYLDIKEIFTAINDATRKLQARSA--KGALTVSLSPSFAIQWLVPRLSGFNQSFPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +      +   +L   ++    +P  L   R      
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-SWPGMRTDRLYPEYLLPVCSPSLLTGDRPLKMPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+          +   ++  +D             +    ++Q  V G G+AL 
Sbjct: 185 DLARHTLLHDSSR----RDWQAYVRQLDMQQQINVHQGPIFSHSSMVIQAAVHGQGVALA 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   D   LV    DV+      Y    +     GK+ AFR +I  +A
Sbjct: 241 NNVMAQNEIDAGRLVCPFNDVLVSKNAFYLVCHDNQAELGKIAAFRKWILTQA 293


>gi|291619675|ref|YP_003522417.1| YhcS [Pantoea ananatis LMG 20103]
 gi|291154705|gb|ADD79289.1| YhcS [Pantoea ananatis LMG 20103]
 gi|327396614|dbj|BAK14035.1| putative HTH-type transcriptional regulator HI1364 YhcS [Pantoea
           ananatis AJ13355]
          Length = 300

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 126/283 (44%), Gaps = 5/283 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F     SGSFT AA +LH++ S+IS+ +S LE  +G +L  R  R L LT+ GS
Sbjct: 6   LKDIVPFVASVESGSFTAAAARLHVTGSAISKSVSRLEMRLGSRLLERTTRKLQLTDAGS 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    +  +L   +  L    + PSG+LR+A     G+  +   L  F   +P++++
Sbjct: 66  AYYQTCLRIMEELAEAEAVLAAQRIIPSGRLRLAVPHTYGRLNVMPLLIPFCQQHPELEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++   ++ ID+  +  D A+R+       +S+  R +    M   A+P +L+    P + 
Sbjct: 126 RMSFSDRFIDLFDEGIDVAVRIGGSDDLPASMGCRHIGRERMVFCASPAWLEREGRPQNE 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q L +H  I + +      + + +               + +    + +Q  + G G+A 
Sbjct: 186 QALMQHRAILY-ERADNTPKPWLFSGKDGHSYWRDVPFRMALADVDAQLQAVIAGLGVAQ 244

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           +P ++V+   D+  L  ++         +   +P   +   K+
Sbjct: 245 MPSWLVQNAVDSGELEILLPQQQPEGLPLSVIWPRRKQLLPKV 287


>gi|260773296|ref|ZP_05882212.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           metschnikovii CIP 69.14]
 gi|260612435|gb|EEX37638.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           metschnikovii CIP 69.14]
          Length = 308

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L     +L E S    G L I+         L   L +F    PDI +
Sbjct: 68  GYFLDIKDIFSALAEATDKLLERSE--KGALTISLPPSFAIQWLVPRLADFNHQQPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI   +      L   KL    +    +P  L   +  +++ 
Sbjct: 126 RIKAVDMEEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPALLVGPKPLVTLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+          +D+   A  +             +    ++Q    G G+AL 
Sbjct: 185 DLARHTLLH-----DTSRKDWKQFAKENGLDSLNVNQGPIFSHSTMVLQAAAHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   D   LV   ++V+      Y    E   + G++  FR+++  KAR
Sbjct: 240 NNVLAQPELDAGRLVAPFDEVLMTKNAFYVVCHEKQADMGRIATFRDWMLKKAR 293


>gi|294141401|ref|YP_003557379.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293327870|dbj|BAJ02601.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 326

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 132/290 (45%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + ++  + +S     AA++L L  ++++R++  LE  +G KL YR AR   +T +G 
Sbjct: 22  LDDIALYIHIVQSRGLASAAKRLGLPAATVTRRLQKLEASIGCKLIYRSARQFAVTAEGE 81

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   E+    E TQ  L       SGKL++    ++   LLQ     F+  YPDIQ+
Sbjct: 82  VYYQAFYELVQTFEATQRSLSAELHLLSGKLKVLAPTNISTGLLQPMWSSFIKSYPDIQL 141

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+N + DI    AD A+R+  P + S L Q+ L  I     A+  YL N   P  + 
Sbjct: 142 DLSLNNANQDILAAQADIALRIG-PQKDSQLYQKGLGFIPTVLVASTDYLNNHGAPEQLD 200

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H +I    +    +       +       P I+   VN      Q+   G GIALL
Sbjct: 201 ELSDHRIIGVNSIP---IWTLTHRVSGHLVELTPSINTF-VNDIKVASQWACDGIGIALL 256

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P   V     + NLV+++ D   P   +Y  +P     + K K  R+F+ 
Sbjct: 257 PISEVYQDLHDGNLVQLLTDWSGPRRELYAVWPSGRLLSAKAKCLRDFML 306


>gi|299065907|emb|CBJ37087.1| putative HTH-type transcriptional activator aaeR [Ralstonia
           solanacearum CMR15]
          Length = 305

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+   +F  V  +GSFT AAE L + +SS S  +S LE  +G++L  R  R L LTE 
Sbjct: 1   MEWNDWEIFCRVVEAGSFTAAAEALGIPKSSASAAVSRLEASLGVRLLTRTTRQLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P++
Sbjct: 61  GSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQYLTEPVCQTLARFPNL 120

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+ +  +  D+     D   + + + +  SSL+ R++V I    YAAP  L      +
Sbjct: 121 QIQVHISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAGRAPLV 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L     ++  D            A    P   P    LQ  +     +  V G G+
Sbjct: 181 TPADLAGWPCLSGPDDASWVFRPAG--APAADPFEVPIQPRLQTLNAEMRARAAVRGLGV 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A +   +     +   LVR++ D       VY   P       K++ F + +  +
Sbjct: 239 ARMARSVGDAEVETGRLVRVLPDYEPTPLRVYALMPARKLVPRKVRVFIDALEAQ 293


>gi|262403086|ref|ZP_06079646.1| transcriptional regulator [Vibrio sp. RC586]
 gi|262350585|gb|EEY99718.1| transcriptional regulator [Vibrio sp. RC586]
          Length = 296

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 128/300 (42%), Gaps = 14/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQDIEDWLKQRLLHRTTRRVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +R++  I L QN+L   ++ F  L+P 
Sbjct: 61  AGEEALQRCEQILHQTMELEMRALEQSGSLHGSIRVSAPIGLTQNMLLDAVQAFTDLHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L+  ++   +  +  D A+R  +     +LI R+L+ + +   A   YL       
Sbjct: 121 VNFDLLASDRFAQLVDERVDIALRFTQQ-PDENLIARRLLEVGVVVCATADYLAKHPPIH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +HN +                   + P        ++ N   ++ +  +   GI
Sbjct: 180 TPHDLTEHNCLVHVSANKWD------FVRDNEPFSVMVNGNVRANDMGTLCRVALNHKGI 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             LP  +      +  L  ++ +   PS +++  Y      T  ++ F +F+  +   W+
Sbjct: 234 IRLPCDLANPLLKSGQLQALLPEYHLPSSSIWAVYLSRSYQTPLVRQFIDFLADR---WQ 290


>gi|238918759|ref|YP_002932273.1| DNA-binding transcriptional activator GcvA [Edwardsiella ictaluri
           93-146]
 gi|238868327|gb|ACR68038.1| transcriptional regulator, LysR family [Edwardsiella ictaluri
           93-146]
          Length = 318

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 127/296 (42%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 11  LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 71  SYYLDIKEIFSALNDATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNSAYPGIDV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++     D  D AI   +      L   +L   ++    +P  L          
Sbjct: 129 RIQAVDREEGKLADDVDVAIFYGRG-HWPGLRVERLYAEYLMPVCSPQLLLGEHPLKDPA 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +WLA   R +G   I+  Q    +    ++Q  V G GI
Sbjct: 188 DLAYHTLLH-------DTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHGQGI 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+      Y    +A  + GK+ AFR +I  +A
Sbjct: 240 ALVNNVMAQTEIEAGRLVCPFNDVLISKNAFYLVCQDAQADLGKISAFRQWILARA 295


>gi|170733839|ref|YP_001765786.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|254247460|ref|ZP_04940781.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124872236|gb|EAY63952.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|169817081|gb|ACA91664.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 300

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 142/300 (47%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD   L    V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MGFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++  +S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEEAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+  Y+   
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETRVLTCASAAYVARH 179

Query: 178 REPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYC 235
            EP   ++L   H  +   D  P     + W     + +    +   L VN    ++  C
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYEWEFHRGKEVVPVDVAGRLTVNDTGGLLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G GIA L +   ++   +  LV+++ +    +F +Y  +  +   + K++ F +F+  
Sbjct: 238 LGGVGIAQLLELYAREILADGRLVQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFVRE 297


>gi|197284474|ref|YP_002150346.1| LysR family transcriptional regulator [Proteus mirabilis HI4320]
 gi|194681961|emb|CAR41382.1| LysR-family transcriptional regulator [Proteus mirabilis HI4320]
          Length = 297

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 140/296 (47%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++R F  V  +GSFT AA+ L LS+S +S  I  LETE+ + L  R+ R  TLT
Sbjct: 1   MQNQIDRIRSFIAVVDTGSFTQAAKYLRLSKSMVSIHIKALETELNVSLLNRNTRRFTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L++   +V  +LE T  + +       G LR+ +T + G++ +   L +F+ L+P
Sbjct: 61  ETGEILYQDFRQVLVQLEQTLDKARLGQQNLQGTLRLTSTAEFGEHYILPLLHQFMCLHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q I ++   D+     D AIRL   ++ S+   RKL    +    +PH LK     
Sbjct: 121 QLKVQYIFNSSIDDLINHKLDLAIRLGA-LKDSNYRYRKLADYTIKLVVSPHLLKKY-PI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I +L     +   +L    +   + +  +   +    ++  + N+  ++ Q  +   G
Sbjct: 179 QEIADLAAVPYLANSNLRHSKLSQQDKINQLFSQLHS--MALFETNTISALKQMALKQMG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +LP++ ++       LV  + ++   + ++   +P       K + F +F+  +
Sbjct: 237 MTILPEWYIQQEITQGELVSPIPELTLLNQSINVIFPHGEHMPRKTRLFIDFLKER 292


>gi|238751632|ref|ZP_04613122.1| LysR-family transcriptional regulator [Yersinia rohdei ATCC 43380]
 gi|238710194|gb|EEQ02422.1| LysR-family transcriptional regulator [Yersinia rohdei ATCC 43380]
          Length = 301

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 120/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +  V   G F+ AA  L L +S +SR+++ LE  +G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYYAEVVEHGGFSAAARVLGLPKSKLSRRLALLEERLGVRLIQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  +    Q  +  +  +P G +RI   + L Q  +   L +F++  P + 
Sbjct: 63  RTYYEHCKAMLEEARAAQESIDLTRAEPRGVVRITCPVALLQETVSAMLADFMVTCPLVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D   +  D AIR+R  P+Q S L+ + L        A+P  +    E  +
Sbjct: 123 IHLEATNRRVDPVAEAIDIAIRVRPPPLQDSDLVLKILGNRCQCLVASPELIAQQGEVNT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G   P+    ++                L      ++    + G G+ 
Sbjct: 183 PADLTGWPSLALGQ--PQQAFIWDLAGPEGAQARIYHQPRLVTADMTTLRSAALRGVGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V D      L+ ++ D       ++  +P        ++A  +++ L+
Sbjct: 241 QLPVMMVTDPLATGALIHLLPDWTLRHGIIHAVFPSRRGLLPSVRAVLDYLELR 294


>gi|167644458|ref|YP_001682121.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167346888|gb|ABZ69623.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 311

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 122/293 (41%), Gaps = 7/293 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D W+ L +F  +  +G FT A   L +S S++S +I  +E  +G++L  R  R +  
Sbjct: 1   MDRDTWNDLAIFAAIVEAGGFTRAGLGLGVSASALSHRIRAMEARMGVRLLNRTTRSVAP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L         ++E   I L     +P+G++R+        +++   L      Y
Sbjct: 61  TEAGERLLASLRPAMAEVEAALITLDADRARPTGRVRVTAHRSAAFDIVLPRLGGLADAY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ ++L++D+  +DI     D  IR    ++   +  R    + +   A+P YL++   
Sbjct: 121 PEVTVELVVDDGLVDIVRRGFDAGIRRLPSLEQDMVSVRLDDGVPLAIVASPEYLRSFGV 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P + Q+L +H  + +   +P     + W    D       +      N    + +  + G
Sbjct: 181 PDTPQDLQRHRCLNY--RLPTAGSLYRWSFERDGQTTTMDVPGTFVTNDIDMLCEGAIAG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            G+A + D        + +L+ +++         Y  Y         L+ F +
Sbjct: 239 LGVACVIDTQAAPFLASGDLMSLLDVWRPMLPPNYLYYAGRRNIPPALRVFID 291


>gi|83310370|ref|YP_420634.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82945211|dbj|BAE50075.1| Transcriptional regulator [Magnetospirillum magneticum AMB-1]
          Length = 301

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 126/291 (43%), Gaps = 10/291 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+L +F  +   GS   AA +L  S  +I+R ++GLE  +G++L  R  R L  T+
Sbjct: 1   MDRLDELAIFIAILEVGSLAGAARRLRRSPPAITRCLAGLEDRLGVRLVERTTRRLAPTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +             +     G+LR+   +  G+  +   + +FL  YP 
Sbjct: 61  AGRRFAEQARHLLSGYNEALRS-AGADEPLRGRLRVTAPVVFGRRHVTPIIVDFLRAYPQ 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+ +  + ++D+  +  D A+R+   +  S+L+ R++  +     A+P Y+     PL
Sbjct: 120 ISIEAVFSDNNLDLIEEELDVAVRIG-TLADSTLVARRVGEVESVLVASPGYIAAHGLPL 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL +H++I F    P  +E    L    R         L VN   + +     G GI
Sbjct: 179 AVDELAEHDVI-FTSGRPVLVEWR--LIEGGRERNVRLTPRLMVNQVEASLAAARAGLGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           A    Y V D+    +LVR++         V+   P       + +AF NF
Sbjct: 236 ARALSYQVVDDLAAGHLVRVLPG-SGALQPVHLVVPGGRHMAARTRAFLNF 285


>gi|152977901|ref|YP_001343530.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150839624|gb|ABR73595.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 301

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F+ +   GS   AA +L ++  ++S  +  LE  +G+ LF R  R + LTE G +L 
Sbjct: 9   LTYFHEIVNKGSIAAAARKLEIAPPAVSNALKLLERHLGLPLFTRTTRKMELTEAGQRLF 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T ++   L+     +++ + KP+G +RI T+      L++ +  EF   YPDI++++ 
Sbjct: 69  DSTKDMIRGLDLMMESVRDLAEKPAGAVRITTSTISYLLLIRPHFAEFCERYPDIRLEIS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQEL 186
           +++  +DI  +  D  IR    ++  +++ +KL+  I +  YA+  YL    +P S+Q+L
Sbjct: 129 VNDGIVDIVKEGFDVGIRFGDRLE-QNVVAKKLLDPIRLGLYASESYLSKYGKPESLQDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H L+ +  +          L    R I       +  N+ +  +     G  +  L +
Sbjct: 188 SRHKLLGYRFVTANRTYPLT-LNQNGREISVNMPYSILTNNLIVELDAIRQGIALGRLFE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +V    D+   + ++E+  T    +Y  Y +  +  G+++   +F+  K+R
Sbjct: 247 PVVNALHDSEKFIPVLEENWTHYPALYLFYMQHSQKAGRVRVLIDFLLEKSR 298


>gi|332288250|ref|YP_004419102.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
 gi|330431146|gb|AEC16205.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
          Length = 301

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 135/303 (44%), Gaps = 11/303 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L +F  +    S + AA+ L+L  S++SR +S LE ++   L     R + LT
Sbjct: 1   MKLNLEALNIFVQIVEKKSISAAAQSLNLPISAVSRSLSKLENDLETTLLQLSTRRMYLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L +   ++   ++  + +L        G LRI T+  + +++L   + EFL  Y 
Sbjct: 61  AEGELLLQQARQILDSVQIAEEKLLARHTDAGGLLRINTSAPVMRHVLIPAMAEFLQRYS 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++L  ++  ID+  +  D AIR+ + +Q SS+  R L    +   A P YL    E 
Sbjct: 121 RIQLELNSNDSLIDLLEERTDVAIRVGE-LQDSSMHARLLGKSAIRILATPQYLAKQGEI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L +H L+ F    P  +  +  L      +       +  +S  S++   +   G
Sbjct: 180 HNVHQLLQHRLLGFSR--PAHLNQWPLLDNSGHLLTI--TPSVIASSGESLLALALHHVG 235

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA-- 294
           +  L D +    + N  LV I+ D+       +Y  Y    + + ++    +F+      
Sbjct: 236 VVCLSDMMTEQARKNGELVEILPDLRQKILQPIYAVYYRHRQLSARVALLIDFLSEYLPK 295

Query: 295 RDW 297
           +DW
Sbjct: 296 QDW 298


>gi|153215018|ref|ZP_01949777.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124114992|gb|EAY33812.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
          Length = 296

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 125/298 (41%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 61  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 121 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATEEYLAQHAPIG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   GI
Sbjct: 180 LPQDLAHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGI 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +         L  ++ D   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 234 IRLPCDLANPLLRAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 291


>gi|149188878|ref|ZP_01867168.1| transcriptional regulator [Vibrio shilonii AK1]
 gi|148837298|gb|EDL54245.1| transcriptional regulator [Vibrio shilonii AK1]
          Length = 307

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 132/295 (44%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L +F   A+ GSF+  A Q+ ++ +++S  I  LE +VG  LF R  R L+LT +G 
Sbjct: 4   LNELTLFAETAKQGSFSKVANQMDMTPAAVSASIKRLEEQVGFPLFVRTTRRLSLTGEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +     L     E+  +    +G + ++   D G+NLL   + EF  L+ ++ +
Sbjct: 64  LFLAKVNCALATLNEGVEEIANARGALTGNIYVSAPSDFGRNLLLDWINEFTDLHENVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPLSI 183
           +L L ++ +D+     D AIR  + +  S+++   L   +     A+P Y+++    L  
Sbjct: 124 RLELSDQLVDMYSKPIDVAIRYGE-LPDSNMVAIPLCPQNVRVLCASPDYIRHHSPVLHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L++HN I+F  ++   + +   L+   + +       +  N    + +  + G GI  
Sbjct: 183 NDLNQHNCISF--MVAGSVHNHWPLSYDSQQVVIETKGAISANDGDVVRRLGLKGRGIVN 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                   +     L +++ D    S  +Y    +  +    ++ F+ F+  K +
Sbjct: 241 KSLIDASQDIIEGKLRKVLPDWQGESVPLYMVCADKRQLRPIIREFQKFLKEKCQ 295


>gi|186472186|ref|YP_001859528.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184194518|gb|ACC72482.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 319

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 134/292 (45%), Gaps = 7/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F  +  + SFT AAE L + +++ +  +  LE  +G  L  R  R L+LT +G+
Sbjct: 5   IQAMRTFMRIVDTNSFTRAAESLEIPRATATTIVQNLEALLGTTLLVRTTRRLSLTPEGA 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +++   ++  +  L+++   PSG+LR+     +  +++   L +F   YP I +
Sbjct: 65  AYYERCAQILADIDEMEATLRQTLDNPSGRLRVEMPGAVATSIVLPALDDFHERYPSIDL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + + ++++D+  +  DC+I+L + +  S L  ++L T+     A+P YL+    P S+ 
Sbjct: 125 AIGVSHRNVDLVGEAVDCSIQLGE-LPDSGLAAKRLGTLEHVTCASPAYLERYGMPESLD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  +     +     DF+       P+       ++V+   + +   + G G+ + 
Sbjct: 184 DLSEHVAVNCMSALTGRAVDFD-FDVGGSPLTVKVNGFIKVSDEHAYLTCGLQGLGL-IQ 241

Query: 245 PDYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  I      D   L  ++         V   Y +  +   +++AF +++  
Sbjct: 242 PARIAAQALLDKGLLREVLPQWKPVPMPVSVAYVKGRRVAPRVRAFVDWLAE 293


>gi|311279643|ref|YP_003941874.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308748838|gb|ADO48590.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 295

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 116/279 (41%), Gaps = 9/279 (3%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            +   GS + AA  L +S+  +SR +  +E   G +L +R  R LTLT  G K  + T  
Sbjct: 12  RICELGSLSAAARALGMSRPMVSRYLEQMEKWAGARLIHRSTRRLTLTPAGEKTLQKTRN 71

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +    +  + + Q     P+G LR+A        L+   L +FL  YP ++++L ++N  
Sbjct: 72  LARLSQEIEGQTQR--NTPAGVLRVACAHFTAMQLISPILPDFLARYPQLRLELDINNHP 129

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           + +  +  D AIR+    +  + I R+L        AAP YL+    P ++  L  HN +
Sbjct: 130 VSLVGERIDVAIRITDNPEPGA-IARRLGECRSVLCAAPAYLQQRGTPDTLAALADHNCL 188

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK-- 250
            +     +    +++               L       ++   + G GIA+LP    +  
Sbjct: 189 HYSHFAGQA---WHFSDAQGESHSVAVQGNLSAGISSLLLDAALAGCGIAMLPWLEAQHG 245

Query: 251 -DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            ++  LV ++      S  VY  Y       G L  F +
Sbjct: 246 LESGALVPLLAGYQPKSLGVYGLYLSRDYQPGALHLFLD 284


>gi|218710363|ref|YP_002417984.1| DNA-binding transcriptional activator GcvA [Vibrio splendidus
           LGP32]
 gi|218323382|emb|CAV19559.1| Glycine cleavage system transcriptional activator (Gcv
           operonactivator) [Vibrio splendidus LGP32]
          Length = 302

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNSLRVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLSLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L     ++ E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTSLAEATDKVLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +    S L   KL   ++    +P  L   +   S+ 
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-NWSGLRADKLYQEYLIPLCSPSVLLGVKPLESLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+   A  +   G         +    ++Q    G GIAL 
Sbjct: 185 DLACHTLLH-----DTSRKDWKQFAKQNGIDGVNVNHGPIFSHSTMVLQAAAHGQGIALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   +   L+   ++V+      Y    E   + G++  FR+++  KA+
Sbjct: 240 NNVLAQPEIEAGRLIAPFDEVLVSKNAFYVVCHEKQADMGRIATFRDWMLAKAQ 293


>gi|152995684|ref|YP_001340519.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836608|gb|ABR70584.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 305

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 130/290 (44%), Gaps = 10/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V  +GSFT AA++L ++ S +SRQ+S +ET +   L  R  R  T T  G  +
Sbjct: 12  DMAAFVAVVETGSFTKAAQKLGVTPSGVSRQVSRIETALSAVLIERTTRRQTTTLVGRAV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++    +   I  + ++ + SG+LRIA      + +L+  L  F+  YP + +Q+
Sbjct: 72  YEQCRQMLDSAKEAVIASENNANEASGRLRIAAPDSFARQVLEPLLVSFMQRYPAVSLQV 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           ++ +  +D +    D    + +      L+ + L  +     A+P YL +   P S ++L
Sbjct: 132 LVTDLRVDPAYQNVDLVFYIAEK-PYEHLVCKTLGRVRSVLCASPQYLADHGVPNSPEDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +  G      +  F+     +R           +      ++  + G GIA  PD
Sbjct: 191 TDHSCLPLGLFDGDSIWTFS---QGERRTVVTVDGRYMMTDAEMRLKGVMNGFGIAPFPD 247

Query: 247 YIVKDN---PNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFI 290
           ++VKD      +V+++ED    S     +Y  +P       +L+ F +F+
Sbjct: 248 FVVKDALEKGEVVQVLEDWQLNSDFQGGIYMQFPAMRFMPNRLRVFIDFM 297


>gi|326794141|ref|YP_004311961.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326544905|gb|ADZ90125.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 299

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 7/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+VF      GSF+ AA++L  + +  S  I  LE  VG +LF R  R + L+E G +
Sbjct: 5   DDLKVFIYSVEEGSFSAAAKRLGSTPALASSAIQRLEKAVGARLFIRSTRTIRLSEDGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      LE  + EL       SG LRI+   DLG+N+L   L++F   YPD+ I 
Sbjct: 65  YLAHARAAIDALEAGERELNSKRDDISGTLRISAPSDLGRNVLLPWLQDFQDTYPDLSID 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQ 184
           L L +   D+  D +D  IR    +  SSLI   LV        A+P YL+    P SI+
Sbjct: 125 LRLGDHISDLYKDTSDVGIRYG-VLGDSSLIALPLVPDNRRIVCASPVYLEQYGTPASIE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +HN + +   I     D       D             +    + ++ + G G+   
Sbjct: 184 ALRQHNCLLY--QIAGVAYDHWPFVLPDGNKTIKVKGTFASDDADVVKRWGIAGKGVLYK 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               +  +    +LV+I     +P   +    P     T  +K    F+  +
Sbjct: 242 SRLDILSDIKAGSLVQIFPTDHSPLLPLQLVCPHRTSITPAIKKLTEFLRER 293


>gi|313498497|gb|ADR59863.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 307

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 137/298 (45%), Gaps = 13/298 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           ++ D    +++F     +  F+ AA +L L+ SS++R +  LE  +G  L  R  R ++L
Sbjct: 5   LNMDKLLAMKMFVATVDAQGFSAAARRLGLATSSVTRLVDALEASLGATLLNRSTRQVSL 64

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G++ ++    ++  L+     + +   +P G LR++  ++ G+ ++  +L  FL  +
Sbjct: 65  TEAGARYYQRARGIFEALDEADASIADRGEEPVGVLRLSLPVEFGRRVIAPHLGPFLAQH 124

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++ + L ++  D+     D +IRL  P  +  L+ R+L        A+P YL     
Sbjct: 125 PALELDIDLSDRLDDLLDGRYDLSIRLGDPSPNDELVCRRLGGFQRWLVASPAYLAGREP 184

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
               +EL  H  + F        +   W  T  +   E  +S  L+  +   + +  + G
Sbjct: 185 LQHPRELLDHACLRF----RYGHKARPWRLTCGQDSLELDVSGPLRSANADMLRETALAG 240

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNF 289
           SGIALL D++V+++     L R+  D           +   Y    + + ++ AF +F
Sbjct: 241 SGIALLADWLVREDVLAGRLQRVFPDWQASPGAANSSINALYMPNHRGSRRVNAFIDF 298


>gi|255263828|ref|ZP_05343170.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
 gi|255106163|gb|EET48837.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
          Length = 295

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 137/285 (48%), Gaps = 7/285 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+F +V  +G  + AA++L +++S++SR+IS LE   G  L  R      LT  G 
Sbjct: 4   IEDLRIFGIVVETGGISKAAKRLGIAKSAVSRRISLLEERYGAILIDRTPGVWELTATGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L++   +V  +++  + +   +S   SG L ++   + G N L   L  F   +P+IQ+
Sbjct: 64  ELYQRALQVVGEMDGIEADFVNTSANHSGPLSVSVPREFGINFLSNALLAFKAKFPEIQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D++ ID+  +  D AIR+   I  S+    ++ T++   +A   Y K    P  + 
Sbjct: 124 TIDFDDRSIDLDRENYDFAIRITGNIIDSAG-ATRIGTVNHRLFAGSQYFKTHAMPTCLD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HNL+ FG          +          EP    L  NS   +++  + G GI+ L
Sbjct: 183 DLRDHNLLYFGSARRTVWHFRDAKDKHQELEFEP---FLNSNSGTFLLKATIGGHGISRL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           PD+I  +     +LV ++ D++ P + ++  + E      +++ F
Sbjct: 240 PDFIASEAVPQGDLVEVLPDLVMPEWGIFLVHSEKRLLNRRMRLF 284


>gi|221069875|ref|ZP_03545980.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220714898|gb|EED70266.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 303

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 128/300 (42%), Gaps = 7/300 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   D ++L  F  V   G F  A   L L +S +SR+++ LE  +G +L  R  R   +
Sbjct: 1   MKLPDLNELYYFAQVVEHGGFAPAGRALGLPKSKLSRRVALLEDRLGAQLLLRSTRSFAV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G + ++    +  + E  +  +     +P GK+R++  + L  + +   L EF+  Y
Sbjct: 61  TEVGKRYYQHCRAMLTEAEAAEESVALVHSEPCGKVRMSCPVALLASRVGHMLGEFMRQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P +++Q+   N+ +D+  +  D A+R+R  P+Q S L+ R L        AAP  L+   
Sbjct: 121 PRVELQVDETNRRVDVIGEGLDLALRVRPPPLQDSDLVLRTLAERRQCLVAAPELLQRLG 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P    +L     +  G +        +    V   +       L   S L++    VLG
Sbjct: 181 PPGGPMDLSAWPSLDMGGVQETHRWVLHGPDAVRAEVRHQ--PRLVTQSMLALRDAAVLG 238

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +G+  LP+  V++   +  LV+++         ++  Y         ++   + +    R
Sbjct: 239 AGVVQLPNMFVREELRSGTLVQVLPGWQPRPEIIHAVYASRRGQLPAVRTLLDHLAQSFR 298


>gi|167561018|ref|ZP_02353934.1| LysR family transcription regulatory protein [Burkholderia
           oklahomensis EO147]
 gi|167568279|ref|ZP_02361153.1| LysR family transcription regulatory protein [Burkholderia
           oklahomensis C6786]
          Length = 322

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 129/300 (43%), Gaps = 12/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G 
Sbjct: 7   LSALETFVCAVEEGSLSQAARKLAKTPSAVTKAIAGLEATLGVQLLERTTRRLVLTEGGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 ++V  +L     +L E   +P G LRI      G  +L      F   +P ++I
Sbjct: 67  LYLATATDVLRRLADGARQLSEHDDEPRGLLRITAAHSFGYAILAPLCTPFAQAFPRVRI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +  +DI  +  D A+R+      S ++ + + +      A+P YL     P++  
Sbjct: 127 ELSLSDHYVDIVGEGFDLALRMGNYDLPSQIV-KPIGSNRSLLCASPDYLARRGRPVAPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +          F+   T +R   EPR   L  ++Y   +   + G+G+   
Sbjct: 186 DLAQHDCVIYRHPTLANTWTFDRDGTRER--IEPR-GLLATDNYALALAATLDGAGVLPC 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P + V D      LV ++      S +     +   YP + + + KL+     +  K  D
Sbjct: 243 PQWSVVDALEAGRLVPLLTAWRFESASFGEDRICAAYPSSRRGSTKLRRLIERVEAKLAD 302


>gi|167644762|ref|YP_001682425.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347192|gb|ABZ69927.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 297

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 123/288 (42%), Gaps = 9/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D+L +   V  +G    A  +L  S ++++R ++ LE  +G +L  R  R L  TE G 
Sbjct: 4   LDELALLVAVIDAGGLAAAGRKLRRSPAAMTRALAALEERMGARLIERTTRRLAPTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    ET       +     G LRI      G   L   + +FL  +PD+Q 
Sbjct: 64  DLAERARRLLADYETALRAP--APDAVRGTLRITGPTVFGGRHLTPVVSDFLAQHPDVQA 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++++D+       A+R+  P+  SSL+ RKL  +     AAP YL     PL   
Sbjct: 122 DLTLHDRNLDLIEGELHVALRIG-PLADSSLLVRKLGEVRRLVVAAPDYLTRRGTPLEPG 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H++I    + P     F     V     EPR   L+VN+  + +   + G G+  +
Sbjct: 181 DLTDHDVILTTVVSPTPEWRFEAQGRVRAVRLEPR---LRVNNVEAALSAILAGRGVGRV 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y V ++     LVR++ D   P+  V             ++AF +F
Sbjct: 238 LSYQVAEDLAAGRLVRLLPDFEPPAIPVQLLTAGGRFMPPLVRAFLDF 285


>gi|312884941|ref|ZP_07744631.1| DNA-binding transcriptional activator GcvA [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367418|gb|EFP94980.1| DNA-binding transcriptional activator GcvA [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 302

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 126/293 (43%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S Q+  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQVKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  +     ++ E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTSVAEATDKVLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +  Q   L   KL   ++    +P  L + +   ++ 
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-QWPGLRADKLYQEYLIPLCSPSLLMSQKSLETLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+          +D+   A  +   G         +    ++Q    G G+AL 
Sbjct: 185 DLKEHTLLH-----DTSRKDWKQFAKQNGIEGVNVNHGPIFSHSTMVLQAAAHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   L+   ++V+      Y    +   + G++  FR+++  KA
Sbjct: 240 NNVLAQPEIEAGRLIAPFDEVLVSKNAFYVVCHDKQADMGRIATFRDWMLSKA 292


>gi|296102271|ref|YP_003612417.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056730|gb|ADF61468.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 297

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 121/283 (42%), Gaps = 9/283 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E   G +L  R  R LTLT  G K+  
Sbjct: 8   QVYNRICELGSLSAAARALGISRPMVSRYLEQMEKWAGTRLVNRSTRKLTLTAAGEKVLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            T  +    +  +   Q     PSG LR+A       +L+   L   L  YP ++I+L +
Sbjct: 68  KTRTLSQLSQEIE--GQSEKDLPSGTLRVACAHFTAMHLIAPVLPGLLSRYPQLRIELDV 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N  + +  +  D AIR+    +   +I R+L        A+P YL     P  ++EL +
Sbjct: 126 NNHPVSLVGERIDVAIRITDNPE-PGMIARRLGECRSVLCASPQYLATHGTPEQVEELAQ 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD-- 246
           HN + +     +    +++L      +       L  +    +M+  V   GIA+LP+  
Sbjct: 185 HNCLHYSFFAGQA---WHFLTPEGENVSVAVSGNLSASISSLLMEAAVKHCGIAMLPEQE 241

Query: 247 -YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +   +   LV ++  +   +  ++  Y         L+ F +
Sbjct: 242 AHAAIEQGTLVPVLSSLTPKALAIHGIYQSREYQPAALRVFLD 284


>gi|170693129|ref|ZP_02884290.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142127|gb|EDT10294.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 307

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 118/297 (39%), Gaps = 12/297 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L VF  +A  G+ T AA +L  S  ++SR +  LE E G  L  R  R   LT  G
Sbjct: 12  SLRDLEVFVAIAEEGNLTAAARRLDRSLQAVSRSLQVLEREAGTLLVARTTRQCRLTTAG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    +V   L   + EL E +   SG+LRI      G   +   +  FL  YP + 
Sbjct: 72  EQFYTRIKQVLADLAMARAELAEHATTVSGRLRICGPTLFGPRYIAPLVAAFLARYPRLT 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L  +  D +   AD  IR+ +    S+LI R+L TI    +A+P YL+    PL  
Sbjct: 132 ASLDLSEEYDDPATSGADVTIRIGE-TPDSNLIARRLGTIRRVTFASPAYLEARGRPLRP 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ +    L    +  +     V+  +        + NS  +I      G GI  
Sbjct: 191 ADLKQHDCVVRSSLPEASLWRYRSKRGVEESVQV--RGRFESNSTAAINDAVASGLGIGR 248

Query: 244 LPDYIVKDNPNLVR------IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + +     LV+      I+ D       +   +    +   + + F  F+  + 
Sbjct: 249 AAYWQI---GELVQQRRVELILTDYELSPLPLQALWLPTRRLPARTRLFVEFLASRL 302


>gi|260767262|ref|ZP_05876203.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           furnissii CIP 102972]
 gi|260617770|gb|EEX42948.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           furnissii CIP 102972]
 gi|315180893|gb|ADT87807.1| DNA-binding transcriptional activator GcvA [Vibrio furnissii NCTC
           11218]
          Length = 310

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 122/294 (41%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L     +L E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFGSLAEATDKLLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI   +      L   KL    +    +P  L   +   ++ 
Sbjct: 126 RIKAVDMEEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPSLLLGSKPLATLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+   A  +             +    ++Q    G G+AL 
Sbjct: 185 DLSYHTLLH-----DTSRKDWKQFAKENGLESVNVNHGPIFSHSTMVLQAAAHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   D   LV   ++V+      Y    E   + G++  FR+++  KAR
Sbjct: 240 NNVLAQPELDAGRLVAPFDEVLMTKNAFYVVCHEKQADMGRIATFRDWMLKKAR 293


>gi|332283323|ref|YP_004415234.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330427276|gb|AEC18610.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 297

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 126/293 (43%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  V  +G+F+ AA +L L+ S IS+ IS LE  + ++ F R    + LT+
Sbjct: 1   MDKYTEIQVFLAVVENGNFSAAARKLGLTPSGISKTISRLEARLAVRFFDRIGGSIRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G      +  V   +   +  +     + SG +R+ T++   +  L   L   L  +P 
Sbjct: 61  EGHAFQVRSQRVVDAMHEAENAVLPEGDQISGLIRVHTSLTFAKYQLAPILSLLLNRFPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++ ++  +  +      D AI    P + S L+ + L        A+P YL+    P 
Sbjct: 121 LRVEFVIGTERGNFLERDIDVAIHSGNPTEMS-LVGKPLFLRRWAIAASPAYLQRHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H+ + F   +      + +       +       +  +    +    + G GI
Sbjct: 180 CPDDLLRHHCLNF--TVRTHWNTWTFTEHGTSRMLTIPDGPVGADQGELLHSLALHGLGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
             L ++ + ++     L+ +++     +  T+Y  YP+      +++ F +FI
Sbjct: 238 VRLAEFHIGEDIRQGKLLELLKGFEPQAHDTMYVLYPKGRSLAPRIRVFLSFI 290


>gi|220919799|ref|YP_002495102.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
 gi|219952219|gb|ACL62610.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 302

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 122/297 (41%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  +R+F  VA SG F+ AA QL++S  +++R ++ LE  +G +L  R  R + LTE
Sbjct: 1   MDRWQAMRIFVRVADSGGFSGAARQLNMSPPAVTRAVAALEDLIGTRLLTRTTRSVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   +E  +     S   PSG L +   +  G+  +   + E+L  Y  
Sbjct: 61  AGGRYLEDCRRILADIEEAEAAAAGSYATPSGLLTVTAPVQFGRIYVLPVITEYLSRYSA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  + +  ++ I++  + AD  +R+   +  S L   ++ T+     AAP YL     P 
Sbjct: 121 VTARALFVDRVINMVEEGADVGVRIGH-LADSGLTATRVGTVRRVVCAAPSYLDRYGAPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H +I    +         W     R         L   +  + +   + G GI
Sbjct: 180 EPRDLHDHAVIGSTSVGGLA----EWRFGGGRRTAVTVRPRLICTTIDAALAAAIDGHGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             L  Y V        L  + +D    +  ++    +  +   K++AF +    + R
Sbjct: 236 VRLLSYQVAPALAEGRLRTVFDDQEEEAMPIHVVSSDGRRAPAKVRAFIDLAVQRLR 292


>gi|78047910|ref|YP_364085.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|121593780|ref|YP_985676.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|78036340|emb|CAJ24031.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|120605860|gb|ABM41600.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 311

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 119/299 (39%), Gaps = 12/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F   AR  SF+ AA +L+++ +++ + +  LE  +G  LF R + G   L  TE
Sbjct: 7   LNALRAFEASARHQSFSAAAAELNVTPAAVGQLVRTLEDALGAPLFERSSSGKVRLVPTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + +L      L+E S   SG L +  +       L   +  F    PD
Sbjct: 67  AAERALPDIRAGFSRLTLGMERLREGST--SGVLTVTVSPAFAAKWLLPRIDRFQAACPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L  ++K +D      D  +R         L   KL+   +    +P  L+   +  
Sbjct: 125 TDVRLDTNHKSVDFVAQRIDIGVRYGLG-NWPGLQADKLMDEEVFPVCSPDLLRQRGKLR 183

Query: 182 SIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              +L +  LI    ++          W+              LQ+N+  +++Q  + G 
Sbjct: 184 KPGDLARQTLIHDLSMVGHAGFPTWEAWMEKAGVADAAMIWRGLQINNSAAVLQAAIEGH 243

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIAL    + +D+     LVR+  DV        Y  Y     +  +L AFRN++  +A
Sbjct: 244 GIALARSVMARDDLASGRLVRLFPDVSFALEVAYYVVYRPECASLPRLVAFRNWLLDEA 302


>gi|260469766|ref|ZP_05813924.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259028449|gb|EEW29767.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 310

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 127/298 (42%), Gaps = 6/298 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              ++++R F  VA  GS +  A +L + QS+I+R +  LE  VG+ L  R  R +T+T 
Sbjct: 5   DVTFERMRTFVRVAERGSLSAVARELGVGQSTITRHVRELEEAVGVPLLSRTTRRVTMTA 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS+ +  + ++   +E    E + +   P+G +RI+ T   G   +   +  F   + D
Sbjct: 65  EGSRYYANSVQILRLVEQASDEARSTRGAPAGTIRISCTAAFGVLHVSRLIFAFQDRHAD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L L ++ +D+  +  D A+RL  P+  SSL  R L        A+P YL     P 
Sbjct: 125 IGIDLSLTDERVDLVREGIDIALRLG-PLTDSSLKLRALGQSRRLLVASPAYLAARGRPS 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I   ++     E              P    L+++  L+  Q  V   GI
Sbjct: 184 VPSDLSRHEGIRMSNVAGS--ETLVLQGAGGERHMVPFAGRLRIDHGLAARQALVAARGI 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A    ++V    D  +L  I+ D    S  +            +++    F+  +  +
Sbjct: 242 APAHRWLVDDLLDAGSLETILTDYSLTSVPLNMLIVPERAGVARVRLLVEFLAERIAE 299


>gi|237507897|ref|ZP_04520612.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|235000102|gb|EEP49526.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 335

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+
Sbjct: 1   MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   LE  +   + +   P G LR+     L +  +   L +FL  YP 
Sbjct: 61  DGEAYYRRCVRLIADLEEAEGAFRAA--APRGLLRVNLQGTLARYFVVPALPDFLARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IRLHIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            +  L  H  + +  +     +      TVD  + E R+ + + V          V G G
Sbjct: 178 ELAALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++  +
Sbjct: 236 IVQVPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRER 291


>gi|323499606|ref|ZP_08104575.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323315346|gb|EGA68388.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 294

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 136/294 (46%), Gaps = 9/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D + VF  VA   SFT AAE L++ ++ +S+ ++ LE+E+  +L +R  R L+LT+ 
Sbjct: 2   ISLDDMMVFAKVADKRSFTLAAEDLNIGKARVSQIVTRLESELNTRLLHRTTRSLSLTDS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +         E+Q  +  PSG +R++T        L   L +FL  YPDI
Sbjct: 62  GVAYYQKCLAISELAHEANTEIQNVNQVPSGVIRLSTPSTT----LVSVLSDFLKRYPDI 117

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ +I  +   ++     D A+R    ++ SSL   KL        A P YL    +  S
Sbjct: 118 QLDIIESDSYSNLIESRCDIALRASSSLEDSSLYAIKLGDFTDMICATPKYLSQFPQVTS 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L + + ++    I    +   +               +QV + +S+ ++ +   G A
Sbjct: 178 VEDLLQMDWVSHH--IVHGEKQLTFTNAQGEITKLQHAPRVQVRTSISVREFVLNDLGFA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++P ++V+   +   ++RI+ +V      +Y  Y E      +++A  +F+  +
Sbjct: 236 IMPSFMVQEALEQGQVMRILPEVHNHKIPLYAVYQEKAMMPLRVRALIDFLKQQ 289


>gi|152988572|ref|YP_001349664.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963730|gb|ABR85755.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 304

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 132/297 (44%), Gaps = 11/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F V+   GSFT AAE+L  S+  +S++I  LE ++G+ L +R  R L+LT  G
Sbjct: 3   DLKDLAAFAVLVELGSFTRAAERLGCSKGQLSKRIGALERQLGVILLHRTTRRLSLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +  + +  +  +        G++R+   + LG+ L    L++F   YP ++
Sbjct: 63  AALLPEAQALRAQAQRARQAVARLQESVEGQVRVTLPVSLGETLFDALLEDFQARYPLLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N   D+  +  D AIR     Q + L+ R L  +     A+P YL    EPL  
Sbjct: 123 VELDLYNGLRDLVGEGFDLAIRAG-VDQDARLVARPLFVLQEITCASPAYLARHGEPLRP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +   +            ++    ++R         L  N Y  + +  + G+GIA 
Sbjct: 182 GELRERECLLNSHYSGHEEWLYHRRHRLER---VAVSGFLASNHYSLLKKAALAGAGIAR 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP Y+V D   +  L  ++ D  T S  ++  +P       + +   +++     DW
Sbjct: 239 LPSYMVHDELGDGRLAWLLRDYQTRSTPMFLVHPFQGGLPRRTQVLADYLL----DW 291


>gi|87121982|ref|ZP_01077867.1| probable transcription regulator protein [Marinomonas sp. MED121]
 gi|86162780|gb|EAQ64060.1| probable transcription regulator protein [Marinomonas sp. MED121]
          Length = 306

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 131/295 (44%), Gaps = 17/295 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V   GS+T AA++L  +++ +S Q+S LE  + I+L  R  R +  T  G   +
Sbjct: 1   MEAFITVFEEGSYTSAAKRLGRTKAMVSTQVSQLEAHLQIRLMTRSTRSIQATAMGRTYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+  + +L +SS   +GKLRIA     G+ ++   + + +  YP+++I ++
Sbjct: 61  EQAKLLLEDLDNLESQLTQSSQNVAGKLRIAVPTTYGEQVVMPFVAKLIETYPELEIDIL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D AIR+ + ++ SSLI   +  ++M   A+  +L++   P    +L 
Sbjct: 121 LSDRYVDLINEGVDAAIRIGR-LEDSSLIASHIGKVNMMLCASQAFLESYPTPKQFSDLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD---RPIGEPRISC---------LQVNSYLSIMQYC 235
               +   D   +    F  +   D   R   + RI           ++VNS  + +Q  
Sbjct: 180 DLPCV-LDDNSRENYWSFEAIENQDILGRNNKKGRIESRVKVTPNYKIRVNSASAAVQLA 238

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
             G  I   P +  +D      L+ I+       F +   YP     + +L  F 
Sbjct: 239 RHGKLICYTPAFAAQDLINQGLLIPILAKAHQTHFPIQIVYPHRKHTSARLTQFI 293


>gi|218891312|ref|YP_002440179.1| PltR [Pseudomonas aeruginosa LESB58]
 gi|187940031|gb|ACD39165.1| transcriptional regulator PltR [Pseudomonas aeruginosa]
 gi|218771538|emb|CAW27305.1| PltR [Pseudomonas aeruginosa LESB58]
          Length = 322

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   ++  VA +GSF+       +  SS+ R+I+ LE ++  +L  R  + L LTE G+ 
Sbjct: 8   DDFDLYISVALTGSFSETGRVFEMPASSVMRRINNLEEKLETRLINRSTKKLVLTETGAL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   ++   +   + E++E +    G LR++  +  G+  +   +   L   P +++ 
Sbjct: 68  FLKHARKISENINQARNEIKEHTSSAVGTLRVSAPVAFGRRHIAPLVSTLLKKNPGLKLD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L+++  D   +  D  IRL   +  SSLI  KL  +     A+P YL     P + +E
Sbjct: 128 FSLNDRIADPVGEKLDLCIRLG-ILPDSSLICSKLAGLRRVLCASPEYLLKHGLPRTPEE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L++H  +         +      A + R I    +S L VNS   +++  + G GI   P
Sbjct: 187 LERHTCLQHNGCSNASLSWQFSSADITRRIRISPVSRLSVNSAELLVEGALQGLGIIHAP 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFR 287
            ++V +   +  LV  ++    P      +Y   P+      K+  F 
Sbjct: 247 TWLVHEEVASGRLVTFLDRHALPEQAQGGIYALRPQGSVVPAKISLFL 294


>gi|157374456|ref|YP_001473056.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157316830|gb|ABV35928.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 301

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 140/295 (47%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  SG+   AAE+L ++  ++S+ IS LE E+ + L YR  R ++L+E G 
Sbjct: 9   LKRIAIFCQVIDSGTMRGAAEKLGMTPPAVSQYISQLEAELEVTLIYRSTRKISLSEAGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +R   ++       +  + E     +G+LR++  + L    +   LK  +   P++ +
Sbjct: 69  QYYRHGKKMLSAAADAEEAINELKHSLNGELRVSVPVGLATKPIAQALKPLISTNPELNL 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +I  ++ ID+  +  D A+R+ +P + S+ I   L ++  H +++  YL+    P++  
Sbjct: 129 TIIAHDQYIDLIEEKVDIAVRVGEP-EDSNFIYHPLGSVRKHLFSSAEYLQKNGNPVTPD 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+KH+ +    +  +   +        +P        L+ N   S++ +   G GIA+L
Sbjct: 188 DLEKHSWLGL--INKQTFSEIELHHPKHKPYRLTPKLRLRFNDLNSLICHVQEGFGIAVL 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P+  V    ++  LVR++      +  ++       KN  K++A    +    RD
Sbjct: 246 PELEVLHLIESGELVRVLPCWSQGNHEIHALT-INKKNPMKVRAVIKALKEYFRD 299


>gi|83859533|ref|ZP_00953053.1| transcriptional regulator, LysR family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851892|gb|EAP89746.1| transcriptional regulator, LysR family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 296

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 132/300 (44%), Gaps = 14/300 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D LR+F  VA   SFT AAE+L ++  + S+QIS LE  +  +L  R  R + LT+
Sbjct: 1   MDRIDALRLFAAVAELESFTRAAERLGMTAGAASKQISALEERMQARLLERTTRSVRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L         + +  +  L       +G LR++  +D G + L   +  F+  +P 
Sbjct: 61  AGRALLERVGPWLSEYDAIENGLVAEQAAAAGILRVSAPVDFGSSRLIQPITAFMAQWPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L   ++ +D+  +  D  +R+ + +  SSLI R+L    +   A+P YL     P 
Sbjct: 121 VEVRLEFSDRMVDLVDEGFDLGVRIGQ-LTDSSLIARRLAPAPLKVLASPAYLNAAGAPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              +L +H+ I   +     +    W    +    E ++S  L +N   + +      +G
Sbjct: 180 HPYDLARHDCIIDRNKPAPNL----WRFQREEDSVEVKVSGLLTLNGARAAVCAAAHDAG 235

Query: 241 IALLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA  P    +   +  ++V I+ +       ++  +P       +++   + +    +DW
Sbjct: 236 IASSPAWAAHAALEAGDVVEILPEWAPDHRDLWAVFPSNRYLAHRVRLLVDHL----KDW 291


>gi|330821893|ref|YP_004350755.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373888|gb|AEA65243.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 299

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 130/277 (46%), Gaps = 7/277 (2%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +L LS S+I++ I+ LE  +G++LF+R  R +TL+++G ++H     +  ++E+ +    
Sbjct: 25  ELGLSPSTIAKNIARLEARLGVRLFHRTTRQVTLSKEGEEIHARCRLILEEVESLETAAI 84

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
           E+  +  G LRI   +  G+ ++   L++    +P + I     ++ +D+  D  D AIR
Sbjct: 85  EARGEVRGTLRIDMPLSYGKQVVMPVLRQLNARHPALTIDARFSDRTVDVVKDGLDAAIR 144

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
           +  P+  SSL+ R+    +   YA+P YL+   EP S  EL +H  + F   +P    + 
Sbjct: 145 IG-PLADSSLVGRQFDAQYFCTYASPAYLEQHGEPASPDELGEHTCLLF--RVPSTGRER 201

Query: 206 NWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMED 261
            W      R       S + +    ++++  V G G+   P Y+     +N  LV +++ 
Sbjct: 202 AWHFRSGRRERSLTPDSRMYLGDGEALIEAAVAGLGLVQTPRYLATRALENGELVEVLKR 261

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              P   +   YP       +++   + +    R  +
Sbjct: 262 HRAPPLPISLVYPSQRHVPLRVRVLLDALLASRRAAR 298


>gi|319781277|ref|YP_004140753.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167165|gb|ADV10703.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 300

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 128/297 (43%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F     +GS + A+ +  +  +++SR+IS LE  +  +L  R  R LT T+
Sbjct: 1   MDRLEAMSLFVAAVEAGSLSAASRRFGIPLATVSRKISDLERHLNTRLLNRSTRRLTPTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   +   +         P+G+L I   +  G+  +   +  FL  YPD
Sbjct: 61  AGQAYLAACRRILDDVGEAERTAAGEYSVPTGELAITAPVVFGRLHVLPVVTGFLAAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L ++   +  D+ D AIR+ + +  SSL+   +  I     A+P YL     P 
Sbjct: 121 VDIRLTLADRITQLVEDHFDLAIRIGR-LPDSSLVAIGVGAIRRVVCASPAYLAEHGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L+ H+ ITF  L       F         I     S LQVN+  + +   + G G+
Sbjct: 180 TPEDLETHDCITFEGLASAASWSF---IKGKAEIPVRVRSRLQVNTAEAAIDAAIAGVGL 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y ++    +  L  ++++     + V   +        KL+AF +F   + +
Sbjct: 237 TRVLSYQIEAALRSGALRVLLQEFEPAPWPVSLVHAGHGLLPVKLRAFLDFAAPRLK 293


>gi|93006155|ref|YP_580592.1| LysR family transcriptional regulator [Psychrobacter cryohalolentis
           K5]
 gi|92393833|gb|ABE75108.1| transcriptional regulator, LysR family [Psychrobacter
           cryohalolentis K5]
          Length = 311

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 123/295 (41%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +   L  F  V  + SF+  A +  +S S +SR I  LE  +G +LFYR+ R +T TE
Sbjct: 6   TINIQTLLFFIEVFDAQSFSVVARKEGVSASKVSRIIKQLEDSLGQQLFYRNTRAVTPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R    +   +   Q ELQ+ +++P G +RI   +  GQ  +   L +    YP 
Sbjct: 66  AGRVFMRYAKSMTESMSAAQQELQDRTLEPGGLIRINAPVFFGQRHIAPWLPQLSAQYPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI L L +  ID      D   R+   +  S+   R       H  A+P Y+    +  
Sbjct: 126 LQIDLSLTDDFIDPHHYATDVIFRIG-TLHDSAFHARIFGEQTYHLAASPSYISTHGKLQ 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  + +          F   +    P   P  + L  N+  S++   + G GI
Sbjct: 185 VPADLTHHKCLLYKGSTGPNRWLFKTESEDWTPFLAP--ALLMSNNAESLLVSALKGMGI 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD+++ ++     L++++ +      T    V   YP     +  ++   ++
Sbjct: 243 VLFPDWLIGEHLKSGELIKLLPNYSTAVKTTPQHVAAIYPHTRHVSLNVRTLIDY 297


>gi|238894118|ref|YP_002918852.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546434|dbj|BAH62785.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 342

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 123/291 (42%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R +  +  +GS + AA Q+  +Q+++SR++  LE  +G+KL  R    + LT+ G 
Sbjct: 41  IELMRTYIRIVEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKLILRTTHAMKLTDDGE 100

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +R   +V       + +L+ +  +P G LR+      GQ  L   L  FL  +P + +
Sbjct: 101 RCYRHARQVVDAWLALEDDLRIADDRPVGVLRVRAPHAFGQQQLLAPLVAFLQRHPQLSV 160

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L++  +D   D  DCAIR+   +   + +   L  +     A+P  L       S++
Sbjct: 161 EWMLNDNTVDFLSDNIDCAIRVGAEV-DPATVSVLLAEVPRCVVASPELLAKYPPLTSLE 219

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     I         +   +      + +      CL  +S        + G G+A++
Sbjct: 220 ALSGLPWIAINTFYQHEVRLRH--QASGQIVSTAITPCLSTDSLYVARNTALAGLGVAMV 277

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             + V ++     L+ +       S  V+  YP A     +L+ F + +  
Sbjct: 278 SSWTVVEDIAAGRLIELFPQWRPASLPVHLVYPWARYYPTRLRKFLDLMRE 328


>gi|186471829|ref|YP_001863147.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184198138|gb|ACC76101.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 303

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 131/305 (42%), Gaps = 13/305 (4%)

Query: 1   MSFDWDKL-----RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   ++ L      +F + A   SFT AA    ++ +++SR ++ LE  +G++LF R  R
Sbjct: 1   MQRQFEDLLLGSIELFCLAAELESFTMAAAAASVTPAAVSRSVARLEERLGVRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G +         ++L   + E       PSG LRI+         +   L EF
Sbjct: 61  QIRLTDAGRRYFEQCRLALNQLADAEREATGQQSTPSGVLRISMPTPYSHYRVLPLLAEF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
             LYP++ ++  L N++ID + +  D AIR R P   S+LI RKL    +   A+P YLK
Sbjct: 121 RALYPEVTVETHLSNRNIDFADEGFDLAIRGRAP-DDSALIARKLEDAELVVVASPAYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY- 234
           +  +  +  +L  H  I F   +P    +  W+   +    +         S   +    
Sbjct: 180 SAGKLDTPDDLIHHECIQFA--LPSTGRNIPWIFRHEDAEIDMMTRGGYGTSGDVLAGAT 237

Query: 235 -CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     ++V     +  L  +++     +      YP A   + +++ F  F+
Sbjct: 238 LARHGAGLFQTYRFVVDKDLKDGTLREVLQPYGGRTRPFVLLYPHARHLSSRVRCFVEFL 297

Query: 291 FLKAR 295
             K R
Sbjct: 298 VEKLR 302


>gi|254251306|ref|ZP_04944624.1| hypothetical protein BDAG_00487 [Burkholderia dolosa AUO158]
 gi|124893915|gb|EAY67795.1| hypothetical protein BDAG_00487 [Burkholderia dolosa AUO158]
          Length = 330

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 131/305 (42%), Gaps = 18/305 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      R F   AR  +F+ AA++L ++  ++S Q+  LE E+G++LF R+ + 
Sbjct: 1   MDLRQLPALNAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEEELGVQLFARNGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           L LT  G +  +        L     E++ S      +L ++         +   +  F+
Sbjct: 61  LCLTGAGMRYAQQVRTALMMLADATREVRASDRDR--RLVVSMLSSFAARFITPRIGTFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P+I ++L   N   D + D  D AIR         L    L+        +P  L  
Sbjct: 119 ERHPEIDVELQSTNALTDFARDDVDLAIRFGFG-TYPGLYVEPLLDEVFFPACSPT-LNG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L  +NL+   D + +   D   L T    + EP+   L  +S   ++Q  +
Sbjct: 177 GKLPQTPADLAHYNLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSSN-LLQAAI 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA++   +      +  LVR+ +      +  +F  P  L +T +++AFR +I  +
Sbjct: 232 DGQGIAIVRRSLAVHDLLDGRLVRLFDIDGPSPWHYFFVCPPPLLSTPRVQAFRTWILQE 291

Query: 294 ARDWK 298
              +K
Sbjct: 292 VAQFK 296


>gi|115525829|ref|YP_782740.1| DNA-binding transcriptional activator GcvA [Rhodopseudomonas
           palustris BisA53]
 gi|115519776|gb|ABJ07760.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisA53]
          Length = 310

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 115/295 (38%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LR F   AR  SFT AA +L+++Q++IS QI  LE E+GI+LF R  R L LT Q 
Sbjct: 7   SLNGLRAFEAAARHLSFTTAATELNVTQTAISHQIKRLEQELGIQLFVRQNRSLALTPQA 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                     ++ L      L       +  L ++T   L    L   L  F   +P I 
Sbjct: 67  RDYLPGIRAAFNDLRLATDRL--LRKDNANVLTVSTLTSLAVKWLLPRLPAFQAAHPAID 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++      +D   D  D AIR  +  Q   L    L+   M    +P  L   +   + 
Sbjct: 125 VRITTSTALVDFRSDDVDAAIRYGRG-QWPGLQASWLMADEMFPVCSPALLAGTKPLKTP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H L+            +   A     +  PR   L  +     +Q  + G G+A+
Sbjct: 184 QDLAHHTLLHTSGGYDDDWRLWLTAAGFSADLAPPR--GLSFDLIFLTVQAAIDGLGVAM 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                V+ +     LV      +   +  Y   P A     K+ AFR ++   A+
Sbjct: 242 GRTSYVEADLAAGRLVAPFATKLPDEWGFYLVSPIATAEAPKIAAFRQWLIAAAQ 296


>gi|300714969|ref|YP_003739772.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299060805|emb|CAX57912.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 298

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 132/295 (44%), Gaps = 7/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V  + S+T AA+ L LS+SS+S++IS LE  +G KL  R  R + +T+ G
Sbjct: 6   NLQGMVIFAKVVETLSYTEAAKLLGLSKSSVSKEISALEVRLGTKLLQRTTRKIVVTDVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   + +  ++++  + +++   +P+G LR+   +  G   +   L +F+     + 
Sbjct: 66  MTWYHYCARILSEVKSAGLFIRQYHEEPTGSLRVVAPVTFGCQCIVPVLNQFVANNLHVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +++  D  D AI +R+     +     L+ I    +AAP YL+        
Sbjct: 126 VDLDLTDRPVNLVDDNVDLAIVIRREPPEHA-HCTPLMDIGWGLFAAPDYLQRFPPITQP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ I F          F       + +     S  + N+  +++   +  SGIA 
Sbjct: 185 DDLPRHDFILFRGPAHTISLPFR---KEKQKLDIEVRSRFRANNSTALLNSAIANSGIAY 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP+Y+ ++      L R++ +     +  +         + +++ F   +    R
Sbjct: 242 LPEYVAQEAVKEGKLSRVLAEWEMDVYQSWILTKADSLISPRVRVFIEDLQQALR 296


>gi|294012147|ref|YP_003545607.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292675477|dbj|BAI96995.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 302

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 130/294 (44%), Gaps = 14/294 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D+D   +F  +   G    A  +L +S + +S+++  LE  +G +L +R  R L LT
Sbjct: 1   MDPDYD---LFATIVDEGGMAAAGRRLSISPAMVSKRLVRLEERLGTRLIHRTTRRLALT 57

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +LH     +   LE  +  +  +S + +G LR++     G+  +   L  FL  +P
Sbjct: 58  PAGERLHEDLRAIMAALEEAERRVSGASAEAAGTLRVSAPTSFGRMHVAPYLGRFLEAHP 117

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++ L +   D+    AD AIR+      S L   +L T      AAP YL     P
Sbjct: 118 KVRLRIDLSDDYADLLATRADLAIRITAD-PGSGLAAHRLATNRRVLCAAPDYLARFGVP 176

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L +H L+     +P  +      ATV+        S ++ NS   + +  + G G
Sbjct: 177 ETVPDLRRHRLLAADGQLPWRLIGPKGAATVEGD------SHVRTNSSEMVRELALSGVG 230

Query: 241 IALLPDYIVKD---NPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IAL   + + D     N+ ++M D   +    +Y  +         + AF +F+
Sbjct: 231 IALRSLWDISDALERGNVRQVMPDHEGSADVGLYAVHLPQNNPPLAITAFIDFL 284


>gi|167577310|ref|ZP_02370184.1| LysR-family transcriptional regulator [Burkholderia thailandensis
           TXDOH]
          Length = 306

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 132/302 (43%), Gaps = 13/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G
Sbjct: 3   SLDRFDVFRAVVEAGSFTGAANVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVELTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E    + +       G LR+ +T++    ++   L+EF+ ++P ++
Sbjct: 63  ERFYARCLRVLAEAEEAIDDARGEHGGMQGSLRVTSTVEYALAVVAPALREFMSMHPALR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL   +  Q        + T  +   A+P  L       
Sbjct: 123 VRLETHTSQADLVRDRFDVAIRLGRFEQFQDLPFRGVCIDTYDVRPVASPALLAAHGVAR 182

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S   L +   +    L       + D +    V RP  +P    L  ++   +  +  
Sbjct: 183 IESPDALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLRAFAR 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GSG+ALLP+++V+D+     LV  + D       VY  YP       K++A+ +FI   
Sbjct: 240 QGSGVALLPEWLVRDDLDNGTLVDALPDYRFAQQGVYALYPSTRHVPQKIRAWVDFIKRY 299

Query: 294 AR 295
            R
Sbjct: 300 VR 301


>gi|319793361|ref|YP_004155001.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595824|gb|ADU36890.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 322

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 126/296 (42%), Gaps = 5/296 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +  F  VA  G F  A+  L + +S +SR+++ LE  +G++L  R  R L+LT  G
Sbjct: 3   DLNDMVFFAEVAERGGFAAASRALGIPKSRLSRRVAELEERLGVQLMQRSTRRLSLTPAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R  + +    +     + +   +PSG +R++  I +  + +   L  F+  YP ++
Sbjct: 63  EIYLRHAAAMRDAAQAAAESVAQVQNEPSGLVRLSVPITMAYSGVAQLLPLFMERYPAVR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + + + N+ +D+  +  D A+R+R  ++ S +L+ + L T      A+P  ++      +
Sbjct: 123 VDVRVINRPVDLIEEGFDIALRVRPVVEESATLVAKILGTGRGVLVASPALMQRQGPVET 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L + + +    +  +   ++       +            +   ++    + G G  
Sbjct: 183 PADLARLDTMAMS-VNGEGRAEWRLSGPKGKTYVHTHTPRYVADDIATLQIAAIAGIGAT 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +LP Y+   +     L +++ D        +  +P        ++   +F+F   +
Sbjct: 242 MLPGYMCAADVEAGRLEKVLCDWGPEEAIAHMVFPPRRALVPAVRRLIDFLFEHLQ 297


>gi|221370125|ref|YP_002521221.1| Transcriptional regulator [Rhodobacter sphaeroides KD131]
 gi|221163177|gb|ACM04148.1| Transcriptional regulator [Rhodobacter sphaeroides KD131]
          Length = 318

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D++R F  VA  GS +  A  + + QSS++R ++ LE  VG+ L  R  R +TLTE+G
Sbjct: 18  TLDRMRTFVRVAERGSLSAVARDMRIGQSSVTRHLNELERAVGVALLSRTTRRVTLTEEG 77

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    ++   +     E + +    SG +R++ T  LG   +   +  F   +P+I+
Sbjct: 78  HRYYLQAVQILRLVAEASDEARRAGAASSGLVRLSCTAALGVRHIGRLIHRFQDRHPEIE 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ ID+  +  D AIRL   +  S L  R L        A+P YL     P + 
Sbjct: 138 VDLGLTDERIDLVREGVDLAIRLG-TLGDSRLKLRPLGRSRRILVASPGYLDRRGRPQTP 196

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L++H  I   ++     E              P    L+V+  L+  +    G G+  
Sbjct: 197 ADLERHEGIRMFNIAGS--ERLTLEGPDGTTRVVPFGGRLRVDHGLAAREAYRAGRGLGP 254

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              ++V D   +  L RI+ D   PS  +            +++    F+  + 
Sbjct: 255 AHLWLVDDLLTDGQLERILPDHALPSIPLSLLIAPERARIARIRLMVEFLAQEV 308


>gi|152979205|ref|YP_001344834.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150840928|gb|ABR74899.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 309

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 133/295 (45%), Gaps = 11/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D+  L  F  V  + SF+  A Q +++ S +SR I  LE ++  + FYR+ R +T TE
Sbjct: 6   STDFRTLYFFLRVLDTQSFSEVARQENVATSVVSRAIRQLEDQLQQQFFYRNTRAVTPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +    Q +L E   +PSG +R+   +  G+  +  +L      YP 
Sbjct: 66  AGLLFAEDVRVMMEQFNQAQRKLHERKQEPSGIVRLNAPVVFGRRHIAPHLPALAEKYPQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+L +  I+  ++  D   R+   + +SS+  + +     +  A+P YL     P 
Sbjct: 126 LDVNLMLTDDYIEPHIEPTDIIFRISS-LTNSSMHAKIIAKQRHYIVASPAYLAKYGIPK 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L++H  I + + +         +    + + +   + L  N+  +I   C  G G+
Sbjct: 185 KPVCLEQHRCIIYRNNLGINRW---LIKENGQWVQQNVPAVLTTNNGETIYTACKQGLGL 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNF 289
           A+LPD+ V +   +  LV+++E       T   T+   YP+   N+  ++A  +F
Sbjct: 242 AMLPDWSVYEGLRSGELVKVLEHYQTAIHTEQRTIAMLYPDMRHNSLNVRAVLDF 296


>gi|238026362|ref|YP_002910593.1| putative LysR family transcriptional regulator [Burkholderia glumae
           BGR1]
 gi|237875556|gb|ACR27889.1| Putative LysR-family transcriptional regulator [Burkholderia glumae
           BGR1]
          Length = 324

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 123/289 (42%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G++  
Sbjct: 7   MRVFVCVAELQSFRQAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGTRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  +  +P G LRIA +  L    L   +  F   YP +++QL 
Sbjct: 67  DGCRALLEEFDHLEASVAHTIREPVGTLRIAVSGALSPQRLTPLVDGFRRQYPKVRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +  ID      D AI   + I    +L+   L      A A+P Y++   EP    EL
Sbjct: 127 IADGPIDGLDTSYDAAIVAGRRIDDGPALVSHALAPDPFVAIASPAYIEQRGEPHRPDEL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
            +H  IT    +P     F W                   +N    +    + GSGIA+L
Sbjct: 187 ARHAAIT----LPLDTHGFAWRFVDAGRFAHLVTLQPSYTINDAWLVRAAVMAGSGIAIL 242

Query: 245 PDYIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
           P+  V D      LVR++ D     P   +   YP       + ++F  
Sbjct: 243 PESFVADAISRGELVRLLADYRIDDPDAQLAVVYPNRQFVPARTRSFVE 291


>gi|91783121|ref|YP_558327.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687075|gb|ABE30275.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 299

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 119/293 (40%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+F   A +GS + AA QL L+ +  S  +  LE E+G +L  R  R L LT  G 
Sbjct: 4   LEDLRIFLFAADNGSLSAAARQLDLTPAVASVGLKRLEAELGTRLLARSTRSLRLTPDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +    V  +++  +  +        G + ++   DLG++ L   L EF + YPD+ +
Sbjct: 64  RYLQYARNVMEQVDAGRNAVAHGRRMIGGAVSLSVPSDLGRHALLEWLDEFQVQYPDVSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           Q+ + +   D+       AIR   P + S+L+   L         A+P Y      P + 
Sbjct: 124 QVRIGDHVTDMFRAPIGLAIRYGVP-EDSTLVALPLAPDNRRVLCASPAYFARHGRPETP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN + F   +   + D     +  +P           +    + ++ V G GIA 
Sbjct: 183 ADLRRHNCLRFA--LSDTLHDRWTFFSGGKPDVVSVRGNRSSDDGELVRRWAVAGFGIAY 240

Query: 244 LPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V ++    R+   +         ++         +  + A R+F+  +
Sbjct: 241 KSRLDVLNDLRAGRLEAALTGFDGEGAPLHLVCAHRTMLSPTVNALRDFLLQR 293


>gi|257095782|ref|YP_003169423.1| LysR family transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048306|gb|ACV37494.1| transcriptional regulator, LysR family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 299

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 131/297 (44%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++V   V  +  F  AA +L+LS S+++R I+ LE ++G++L  R  R + +T+
Sbjct: 1   MDRLQHMKVLVAVVDANGFAGAARKLNLSPSAVTRAINELERQLGVRLLARSTRIVRVTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +   +      +  +   P G+L +   +  G   +   + E+LL YP+
Sbjct: 61  AGARYADDCRRILADVAEADESVGGTHRAPRGRLTLTAPVLFGAQFVTPIVTEYLLRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +    +  ++ I++  +  D A+R+ + +  SSL    +  +     AAP YL+ C EP 
Sbjct: 121 VSAVCLFLDRVINMLDEGVDVAVRIGE-LADSSLQAVPVGRVRRVICAAPAYLQQCGEPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H +++   + P        L     P      + +   S  S +   + G G+
Sbjct: 180 TPDDLFAHRIVSAAGVTPTPEWR---LIENGAPRVVKLQARMTTTSNDSAVAAALGGFGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             L  Y V ++     L  ++ D   P+  V+  + E    + +++AF +    + R
Sbjct: 237 TRLLSYQVAEHLRSGRLQAVLSDFELPALPVHVLHREGQHASQRVRAFLDLAVERLR 293


>gi|288961046|ref|YP_003451385.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288913354|dbj|BAI74841.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 310

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 124/295 (42%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  +A SG    AA  L LS + +S  ++ LE  +GI L  R  +G +LT 
Sbjct: 1   MDKLRAMEVFVQIADSGGIRSAASMLRLSPAMVSMHLAQLERTLGIPLIQRSPKGSSLTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  ++   + +L  +S    G+L I     +G  ++   L EF+  YP+
Sbjct: 61  DGQSYLDHCRTILEQISGAEAQLSGTSGLRRGRLSIDMPATVGNCIVLPILPEFMAQYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I   +    +  D+S +  D  IR+  PI  + LI R L    +   AAP YL +  EP 
Sbjct: 121 ITFDISYSARAFDLSDEGYDIMIRVG-PIADTGLIARPLGFCQLATAAAPSYLAHHGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I++LD H +I         +  + ++    + +       L  N     +   +LG G+
Sbjct: 180 AIEDLDTHRVINIRSSRSGRIVPWQFVRD-GQTMFRELPGSLLFNDGEPRIHAALLGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              P Y +     N  L RI+E        +   Y    ++   + AF +F+  +
Sbjct: 239 VQAPVYQLSGLLANGRLCRILERFDARMPQISLLYSPQRRSQQLVHAFIDFLLAR 293


>gi|327189334|gb|EGE56502.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 297

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 132/288 (45%), Gaps = 4/288 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VAR  SFT AA +L +SQS++S  I GLE  +G++L  R  R ++ TE G +
Sbjct: 7   DDLIAFLAVAREQSFTKAAAKLGVSQSALSHTIRGLEARLGLRLLTRTTRSVSPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L       + ++E++   L     KP+G +RI        ++L   L+ FL  YPD++++
Sbjct: 67  LLVSIGPRFDEIESSLAALSAFRDKPAGTIRINAGEHAANSVLWPALERFLPEYPDVRVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+D    DI  +  D  +RL + +    +  R    + M    AP Y  +  +PL+  +
Sbjct: 127 IIVDYGLTDIVAERYDAGVRLGEQVAKDMVAVRIGPDMRMAVVGAPTYFDSRPKPLTPHD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN I         +  +       R +       L  N+    ++  + G+G+A LP
Sbjct: 187 LTDHNCINLRLATYGGVYVWE-FEKDGRELNVRVEGQLVFNNIALRLKAALAGAGLAYLP 245

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  V+   +N  LVR++ED   P    +  YP     +       + +
Sbjct: 246 EDAVQAHLENGLLVRVLEDWCPPFPGYHLYYPSRRHASAAFAVVVDAL 293


>gi|293396222|ref|ZP_06640502.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291421355|gb|EFE94604.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 317

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 134/293 (45%), Gaps = 4/293 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     L  F  VAR GSFTHAA QL ++  ++S+ I  LET +GI+LF R +R + L+
Sbjct: 1   MSSLLQLLPFFEAVARLGSFTHAARQLGVTPPAVSQNIQTLETRLGIRLFNRTSRSVRLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++  +    +++     ++    +PSG LRI         L+   L EF   YP
Sbjct: 61  DEGKLFYQSVAPAMSQIDVAAENIRALRSRPSGHLRITLPQLAASLLVMPFLTEFHARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ++L  D++  D+ +D+ D  IR+   +Q   +             AAPHYL     P
Sbjct: 121 EIQLELFTDDRFADLVLDHFDAGIRMHAVLQKDMIAVPIDNGQQRVIVAAPHYLAQHGMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + + L +HN + +       +E + +L    + +       +  N  L +    + G G
Sbjct: 181 TTPEALRQHNCLRYRFPGSGKLEPW-FLTHGGQHLALEVSGSMIFNEDLLLKAAALAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +       V+    +  LV +M D  + +   +  +P       KL+ F +F+
Sbjct: 240 LTQRFRGTVEPELASGRLVEVMADHASDAAGFFIYFPARRHMPLKLRVFIDFM 292


>gi|172063691|ref|YP_001811342.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996208|gb|ACB67126.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 300

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 144/300 (48%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++  F  +A +GS T AA++LH   S +SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLDEMLAFVTIADTGSLTGAADRLHQPTSVMSRILRRLEDKLDTTLIRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   +E  + ++      P+G+LRI   +   Q+++   +  F   YP
Sbjct: 61  EEGNVFLDYARDIIASVEFAEDQIARQRETPAGRLRINAAMPFMQHVIAPMMPGFREAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+ +L   ++ ID+     D AIR+ + ++ S+L  RKL +  +   A+P YL+    P
Sbjct: 121 AIEAELHTSDEIIDLLEQRTDVAIRIGE-LRDSTLHARKLGSSRLRILASPAYLERAGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H L+ F  + P+ +  +          G      LQ +S  +++   + G+G
Sbjct: 180 ESVDDLATHTLLGF--VQPETLNHWPLRTAAG--DGYRVQPALQASSGETLLTLALNGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L D++    + + +LV ++ D  T     ++  Y      + ++ +F +++  + ++
Sbjct: 236 IVCLADFMTGTHRRDGSLVELLVDDTTEFRQPIHAVYYRNATLSSRIVSFLDYVGAQLKE 295


>gi|254247088|ref|ZP_04940409.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124871864|gb|EAY63580.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 329

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 131/305 (42%), Gaps = 18/305 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      R F   AR  +F+ AA++L ++  ++S Q+  LE E+G++LF R+ + 
Sbjct: 1   MDLRQLPALNAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEEELGVQLFTRNGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           L LT+ G +  +        +     +++ S      +L ++         +   +  F+
Sbjct: 61  LCLTDAGMRYAQQIRTALMVIADATRDVRASDRDR--RLVVSMLSSFAARFITPRIGTFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P+I ++L   N   D + D  D AIR         L    L         AP  L  
Sbjct: 119 ERHPEIDVELQSTNSLTDFARDDVDLAIRFGFG-SYPGLHVEPLFEEVFFPACAPT-LNG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L  + L+   D + +   D   L T    + EP+   L  +S   ++   +
Sbjct: 177 GKLPQTPADLVHYPLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSSNLLL-AAI 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIAL+   +      +  +VR+ +      +  +F  P  L NT +++AFR ++F +
Sbjct: 232 EGQGIALVRRSLAVHDLLDGRIVRLFDIDGPSPWHYFFVCPPPLLNTPRVQAFRAWLFEE 291

Query: 294 ARDWK 298
             ++K
Sbjct: 292 VAEYK 296


>gi|257483421|ref|ZP_05637462.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330986124|gb|EGH84227.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012718|gb|EGH92774.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 302

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 133/296 (44%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  +  SGS + AA+    S +S+ R ++ LE+ +G++L  R  R + LT+
Sbjct: 1   MDRLKAMANFVRIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +  R    +    +  +  L        G LR+   ++ GQ  +   +  FL  + +
Sbjct: 61  EGEEYLRWARRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLCEHQN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L+++ + +  +  D A+R+   +  S+++ R++    + + A+P YL+      
Sbjct: 121 INVELNLNDQIVPLLDERLDLALRIGH-LPDSAMVARRIGATRLVSCASPGYLRTAPLLD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L +H  IT      +      +     + + +  I  L  N   +    CV G G+
Sbjct: 180 TPKSLPEHACITLASHGRQW-----YFRHQGKELIQDIIPRLVCNQVRAASLACVQGLGV 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             L  Y V D   +  L+R++ D  T    +   YP AL+ + ++KAF  +   + 
Sbjct: 235 TRLMHYQVADELADGRLIRVLNDFETADLPIQLVYPHALQLSPRVKAFVEWAIPQL 290


>gi|148557216|ref|YP_001264798.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148502406|gb|ABQ70660.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 307

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 9/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR+F      G F  AA  L L +S +SR+I+ LE  +G++L  R  R  ++TE G
Sbjct: 3   DLNDLRLFVQAVDHGGFAAAARALGLQKSKLSRRIALLEERLGVRLIQRSTRRFSITEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R    +  + E  Q  + +S  +P G +R++    L        L  F+ LYPD++
Sbjct: 63  QEYYRRCVAMLVEAEAAQAVIDQSRSEPRGVVRLSCPTGLLAFQFGELLGRFMALYPDVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D AIR+R  P+  S L+ R+     +   AAP  L   R   +
Sbjct: 123 LHVESTNRRVDVIGEGFDLAIRVRPPPLAESELVMRRFDERTIRIVAAPALL-TARLVAA 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L +   + FG   P   +    LA  D  + E R    L  +    + +  + G+G 
Sbjct: 182 PADLSELPTLDFG---PARGDHRWRLAHADGRVAEVRHKPRLVTDDMAVLREAALTGAGA 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             LP   V D+     LV ++ +    +  V+  +P        ++A  +FI  +    +
Sbjct: 239 VRLPTLAVWDDLQSGKLVTLLPEWRPANEIVHAVFPSRRGLLPSVRALLDFIAGECAAQR 298


>gi|15597252|ref|NP_250746.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9948064|gb|AAG05444.1|AE004632_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 300

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 142/287 (49%), Gaps = 5/287 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +++   VA + SFT AA  L L+QS +SR I  LE E+G++L +R  R ++LT  
Sbjct: 1   MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  +LE  +  L +    PSG L+I T   LG+ ++   L+E    YP +
Sbjct: 61  GQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRCYPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI+  + ++ +D++ +  D A+RL + +    LI R L  +     A+P YL+    P  
Sbjct: 121 QIEAAMTDRLVDLTEEGFDAAVRLGR-VGDVRLIARPLAALRWVTVASPEYLRGHGTPER 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  HN  T  DL    + ++       +P+       L ++   +++   ++G GI 
Sbjct: 180 LEQLAGHNCPTVRDLHTGKLLEWQ-FQRDGQPLSLAVRGDLVLDVADALVDAALVGQGIV 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +  ++ ++      LVRI++    P   V   YP + + + K+ A 
Sbjct: 239 QVMGFMAEEAIRRRRLVRILQPFEPPLCPVSLIYPPSRQCSLKIGAL 285


>gi|301168012|emb|CBW27598.1| putative LysR-family transcriptional regulator [Bacteriovorax
           marinus SJ]
          Length = 299

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 133/285 (46%), Gaps = 5/285 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L ++  +  + SF+  AE L++ +S++S  I  LE ++G +L  R  R +++T++G  L+
Sbjct: 7   LSIYVKLCETLSFSKTAEALNIPRSTVSDSIKRLEEDLGTELLKRTTRKVSVTDEGHLLY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   L   +      S    G++R+     L + ++   L EF L YP+I++++ 
Sbjct: 67  EKAQNVLSDLIDLESSFTGISSTVEGRVRVDMATILAERVIIPRLPEFSLQYPEIKLEIG 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++D+D+  +  D  IR  K ++ SSLI +++    +    +  Y      P S+  L 
Sbjct: 127 SSDRDLDLVAEGIDFVIRAGK-LKDSSLIAKRIGKHKIVNCVSRSYADTYGIPRSLDSLH 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KH  + +        + F +L      + + +     VN+ +S    C+ G GI  +P+ 
Sbjct: 186 KHYQVCYLQNFGSGKDGFEYLDGSRVKMIKMKTFA-TVNNTVSYQAACLAGLGIIQVPEI 244

Query: 248 IV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +    ++  ++++++    P   VY  Y    +   ++K F N+
Sbjct: 245 GILKYLESGEMIQVLKKYEMPPMNVYLLYTNRERIPSRVKVFMNW 289


>gi|206580488|ref|YP_002238899.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569546|gb|ACI11322.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 304

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 122/295 (41%), Gaps = 11/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L +F  +   GSF+ AA  L  S+   +  I  LE  +G +L  R  R +  T 
Sbjct: 1   MDKLDTLTLFVRIVERGSFSAAAADLGFSRPVATAAIKALEASLGARLLQRTTRHVRPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS  ++    +   LE      + +    +G +R+    +L + LL   L +FL  YP 
Sbjct: 61  EGSLYYQRCVAILAALEEA---NRSAGGSIAGIIRVDVAGNLARTLLLPALPQFLARYPA 117

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +Q+    +D+D+  +  DC IR    +  S +I R L  +     A+P YL     P 
Sbjct: 118 MTLQIGESERDVDLVREGVDCVIR-GGHLPDSEMICRPLARLQEITCASPAYLARYGTPH 176

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           +I+ L  H +I F  +  +         T D    E  + C L  +      +   LG G
Sbjct: 177 TIEGLTGHMMIGF--VSSRTQRTLPLSFTQDGRQSEVSLPCRLLTSDADVGAEAARLGFG 234

Query: 241 I--ALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  A LP       +  L  ++ D       +   YP   + + +++ F +++  
Sbjct: 235 LYQAPLPRLEADLASGALTEVLADFRPAPLPLSLLYPSNRQLSARVQVFIDWVTA 289


>gi|194367669|ref|YP_002030279.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194350473|gb|ACF53596.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 300

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 140/294 (47%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+++ F  V  SGS + AAEQL  + S +SR +  LE ++GI L  R  R L LT
Sbjct: 1   MKTTLDEMQAFLSVIDSGSISAAAEQLGQTPSGVSRALGRLEDKLGITLLTRTTRRLHLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    R    +   +E+ + ++     +P+G+LR+   +    +++   +  +   YP
Sbjct: 61  AEGEAFLRHARAIIDAVESAEEQMAARRERPAGRLRVDAAMPFVLHVIAPLVAGYRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q++L   ++ ID+     D AIR+  P+  S+L  R L    +   A+P YL    EP
Sbjct: 121 EVQLELNSSDRYIDLLERRTDLAIRIG-PLADSTLHARLLGRCQLRLVASPAYLARHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+  L +H L++F +  P+ +  +      D  +       + V+S  ++ +  V G G
Sbjct: 180 ASVAALGQHTLLSFNE--PESLNRWPLPGESDGLLLV--RPDIAVSSGETLRRLAVEGVG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
           I  L D++   +     LV+++       +  ++  Y      + ++ +F +++
Sbjct: 236 ITCLSDFVTDRDRSAGTLVQVLAAQTLDVYQPIHAVYYRNTAVSSRISSFVDYL 289


>gi|186476377|ref|YP_001857847.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192836|gb|ACC70801.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 303

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 126/295 (42%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVILGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +     EFL   P+
Sbjct: 61  EGAAFLERCRGLLSEWDQAENELMAGRRSVSGHLIVSAPAAFGRKHVAPLAPEFLKDKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL T        P Y +   +P 
Sbjct: 121 LQVSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLATNRRVVCGTPEYFRKHGKPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++++L  HN   F     +  ++  W    +  +   R+S  L  N    + ++   G G
Sbjct: 180 TLEDLPNHNCFAFNL---QGGQNRGWYFRRNGKLTTVRVSGTLDCNDGELLHRWVSEGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     + +        L  ++++   P + +   YP+      K++ F +++  
Sbjct: 237 LGWRSTWEIDQQLVRGELETVLDEYALPDYDILAVYPQQRYVPAKVRYFIDYLKE 291


>gi|187928444|ref|YP_001898931.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725334|gb|ACD26499.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 322

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 124/294 (42%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AAE+L L +SS+S  +S LE ++G +LF R  R L LT+ G
Sbjct: 6   DWNDWDTFCTVATLGSFTRAAERLGLPKSSVSTAVSRLEGKMGARLFERSTRRLRLTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +     L   + E +  +  ++
Sbjct: 66  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMREHTGLR 125

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ +  + ID      D  + + R P+  S L+ +++  +      AP  L+       
Sbjct: 126 IEVDVAPRQIDPLAQGYDIMLTVPRGPLPDSGLVAQRVFDLRRAVVVAPQLLERLGPLTH 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +   +       ++ +       I  P    ++ ++    MQ  + G G+A
Sbjct: 186 PDQLADWPCLGTSNET-----EWQFRTPGGETINLPLDFRMRTSNSELRMQAAIAGLGVA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +      D   +  L  ++    +P   VY  +P       K+K F + +  +
Sbjct: 241 RITSVFATDLMASGALQEVLTGFQSPPMRVYAVFPGRRLMPAKVKVFMDALHRR 294


>gi|269138075|ref|YP_003294775.1| DNA-binding transcriptional activator GcvA [Edwardsiella tarda
           EIB202]
 gi|267983735|gb|ACY83564.1| DNA-binding transcriptional activator GcvA [Edwardsiella tarda
           EIB202]
 gi|304558119|gb|ADM40783.1| Glycine cleavage system transcriptional activator GcvA
           [Edwardsiella tarda FL6-60]
          Length = 315

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 127/296 (42%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSALNDATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++     D  D AI   +      L   +L   ++    +P  L          
Sbjct: 126 RIQAVDREEGKLADDVDVAIFYGRG-HWPGLRVERLYAEYLMPVCSPQLLLGEHPLKDPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +WLA   R +G   I+  Q    +    ++Q  V G GI
Sbjct: 185 DLAYHTLLH-------DTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+      Y    +A  + GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQTEIEAGRLVCPFNDVLISKNAFYLVCQDAQADLGKIAAFRQWILARA 292


>gi|107023822|ref|YP_622149.1| DNA-binding transcriptional activator GcvA [Burkholderia
           cenocepacia AU 1054]
 gi|116690908|ref|YP_836531.1| DNA-binding transcriptional activator GcvA [Burkholderia
           cenocepacia HI2424]
 gi|170734234|ref|YP_001766181.1| DNA-binding transcriptional activator GcvA [Burkholderia
           cenocepacia MC0-3]
 gi|206559105|ref|YP_002229865.1| DNA-binding transcriptional activator GcvA [Burkholderia
           cenocepacia J2315]
 gi|105894011|gb|ABF77176.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648997|gb|ABK09638.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169817476|gb|ACA92059.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
 gi|198035142|emb|CAR51016.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 329

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 131/305 (42%), Gaps = 18/305 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      R F   AR  +F+ AA++L ++  ++S Q+  LE E+G++LF R+ + 
Sbjct: 1   MDLRQLPALNAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEEELGVQLFTRNGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           L LT+ G +  +        +     +++ S      +L ++         +   +  F+
Sbjct: 61  LCLTDAGMRYAQQIRTALMVIADATRDVRASDRDR--RLVVSMLSSFAARFITPRIGTFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P+I ++L   N   D + D  D AIR         L    L         AP  L  
Sbjct: 119 ERHPEIDVELQSTNSLTDFARDDVDLAIRFGFG-SYPGLHVEPLFEEVFFPACAPT-LNG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L  + L+   D + +   D   L T    + EP+   L  +S   ++   +
Sbjct: 177 GKLPQTPADLVHYPLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSSNLLL-AAI 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIAL+   +      +  +VR+ +      +  +F  P  L NT +++AFR ++F +
Sbjct: 232 EGQGIALVRRSLAVHDLLDGRIVRLFDIDGPSPWHYFFVCPPPLLNTPRVQAFRTWLFEE 291

Query: 294 ARDWK 298
             ++K
Sbjct: 292 VAEYK 296


>gi|270262644|ref|ZP_06190915.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043328|gb|EFA16421.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 316

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 128/294 (43%), Gaps = 10/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ VF  V  SGSF+ AA  L  S S+ SR ++ LE  + ++L +R  R L L+EQG 
Sbjct: 15  LAEMAVFVQVVESGSFSAAARLLGTSPSATSRSVAKLEQALALQLLHRTTRKLRLSEQGE 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +     +      + +V+P G + ++    +G+ +L  ++  FL  YP + +
Sbjct: 75  EAFLRCRSMLEAAHSVMEISGQGAVEPEGLISVSVPKAVGRFVLHPHIPAFLRRYPKVDV 134

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L+++ +D+  D  D A+R+     S  LI R+L+TI     A P YL     P   Q
Sbjct: 135 RLRLEDRYMDLIDDRVDLALRITDR-PSPGLIGRQLMTIEHLLCATPEYLAQHGTPQQPQ 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ I  G+        F       + I          N     +       GI  L
Sbjct: 194 DLAQHSCIYLGETPNDARWKFR---RAGKTIAVNVRGRYAANHTGVRLDAVKQHLGIGSL 250

Query: 245 PDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFL 292
           P +  +   D+  +V+++ +    S     ++  Y        KL+ F +++  
Sbjct: 251 PYFTARQALDSGEVVQVLPEWDFLSSYHGGLWLLYAPNQHLPPKLRVFIDYLVA 304


>gi|121597572|ref|YP_991315.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124382277|ref|YP_001025725.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126446665|ref|YP_001077805.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|167828911|ref|ZP_02460382.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|226200055|ref|ZP_03795604.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|251766876|ref|ZP_02265237.2| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254176369|ref|ZP_04883027.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254201104|ref|ZP_04907469.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254205074|ref|ZP_04911427.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254301349|ref|ZP_04968793.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|121225370|gb|ABM48901.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|126239519|gb|ABO02631.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|147748716|gb|EDK55791.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754660|gb|EDK61724.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|157811418|gb|EDO88588.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|160697411|gb|EDP87381.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|225927907|gb|EEH23945.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|243064469|gb|EES46655.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|261826727|gb|ABN00248.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 312

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 132/302 (43%), Gaps = 13/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G
Sbjct: 9   SLDRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++
Sbjct: 69  ERFYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALR 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL +  Q   L  R +   T  +   A+P  L       
Sbjct: 129 VRLETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVAR 188

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S + L +   +    L       + D +    V RP  +P    L  ++   +  +  
Sbjct: 189 IDSPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLRAFAQ 245

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+ALLP+++V+D+     L+  +         VY  YP A     K++A+ +FI   
Sbjct: 246 QGGGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFIKRY 305

Query: 294 AR 295
            R
Sbjct: 306 VR 307


>gi|172063829|ref|YP_001811480.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996346|gb|ACB67264.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 316

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 128/296 (43%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +    V+A +GSFT AA++L +S++++S++I+ LE   G+ L  R  R + LTE G 
Sbjct: 10  WPHIHSLTVLAVTGSFTAAAQRLGISKAAMSQRIADLEGAAGVPLVRRTTRSVRLTEAGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L   T E Y  +E     +++ + +P G +R+   + LG+  +      F+  YP ++I
Sbjct: 70  TLVDTTREAYETIEMNFARVKDLAGEPRGLVRVTMPVALGRQQIVPLFPAFIEQYPGVRI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++   +S +  D AIR       +  +  KL        A+  YL     P    
Sbjct: 130 ELELSDRLFSLSQEGFDLAIRHTTTAPQTH-VAWKLCETRSLLVASREYLARRGTPEHPN 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H+ + +          F         +  P   C   N+  ++ +  + G GIALL
Sbjct: 189 ALVDHDCLCYLRGNEPTAWSFEPRDRRRARVSVPVRGCFAANNSEAMREAALGGLGIALL 248

Query: 245 PDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PD+  +   D  +LV ++            ++   P +      ++A   ++  + 
Sbjct: 249 PDFSAQRDIDEGHLVPLLGTWRPSGAFGDYIFAIRPYSPVVPSAVRALVEYLRGEL 304


>gi|83943386|ref|ZP_00955845.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
 gi|83845618|gb|EAP83496.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           EE-36]
          Length = 301

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 136/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++R F +VA++ SFT AA+++  S   +S+ ++ LE  +G++L  R  R ++LT+
Sbjct: 1   MDKIDRMRAFALVAKNASFTIAAQRMGRSARLVSKYVADLENALGVQLLNRTTRSVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+    +   +    +  +  ++       G + I+     G   L  +L +F   +P+
Sbjct: 61  AGATYLALCEPLLDGFDELEERVRHDQTSLRGAIHISAPTGFGALRLTPSLAKFGAKHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L   ++ + I  +  D AIR+  P++ SSL  R+L  + +   A+P YL+    P 
Sbjct: 121 VDLNLQFSDRRVSIIEEGFDLAIRIG-PMRDSSLKVRQLGPMPLVVCASPAYLERTGTPD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L  H  I  G++    +  F+      +    P     ++N+  +  +    G+ I
Sbjct: 180 HPRALATHECILDGNMTEPTIWRFD---INGQEEAVPVRGRFRMNAPAAAARLAATGAAI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A  P Y V D   + +LV +  +     + V   +P+  + T +++A  + +
Sbjct: 237 ARCPAYTVADAFRSGDLVELFAEHRVSPYAVAALFPQNRRLTTRVRALIDHL 288


>gi|157371949|ref|YP_001479938.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323713|gb|ABV42810.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 298

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 5/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +L +F  V  +GSFT AA  L  +++ +S  +  LE+E+G+ L  R  R L LT+ 
Sbjct: 2   LNLQRLAIFVAVVDAGSFTAAAVALGQTKAVVSFNVKQLESELGVSLLVRSTRRLALTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++    +    E    +++      SG LRI TT + G  ++   L  F  L+P +
Sbjct: 62  GERFYQRCLRLLQDAENVLDDVRRDHHGLSGVLRITTTPEYGAQVVVPALAAFSQLHPRL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQ +  +   D+  +  D AIRL + +  SS    +L +  +   A+P YL       S
Sbjct: 122 RIQHVSSSYHADLISERFDVAIRLGQ-LADSSHHAARLDSFAILPVASPAYLARHPV-GS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +   I    L                       + L  +S  +++ + + G+G+A
Sbjct: 180 LAQLAQAQWIAHSRLSSPLNWQVITPERQAVLFKVEDAATLMGDSAAALLAFALHGAGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP+++V+       L  ++ D   P  ++Y  YP       K++AF +F+  + 
Sbjct: 240 LLPEWLVRPAIAEGKLCSLLADHQFPIQSIYALYPNTRHVPEKVRAFIDFLRARV 294


>gi|91778871|ref|YP_554079.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691531|gb|ABE34729.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 312

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 135/290 (46%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  +A + SF  AA  L +S +  +R +  LE  +  +L  R+ R L+LTE+G 
Sbjct: 4   LQAMRVFINIADTMSFGQAAANLGISNAMATRYLEQLEAHLNTRLVNRNTRSLSLTEEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    V  ++E  +      + +PSG LRIA       + L   L+E+L  YP++++
Sbjct: 64  IYSKGCRNVLDEIEEIETIAIRGTTEPSGTLRIAAGASFSLSSLTPLLQEYLRQYPNVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D   +  D  I L K I  ++LI+R L+++   A A+P YL     P    
Sbjct: 124 SVTLLHQHVDFVKEGFDVGIVLPKQISGTTLIKRSLLSVRPIAVASPSYLAIKGVPSRPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +           D+ + A   R       + L VN+ L + Q  + G GIA+L
Sbjct: 184 DLTSHTFLALTAASHDG--DWIFAAPDRREKRVTLDAALMVNNALMLRQAALAGMGIAVL 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNF 289
           P+  V  +     L++++ D    +    +   Y +    + K ++F +F
Sbjct: 242 PENHVLTDLRGGTLMQVLTDFRITNADKELTLVYADRRHISAKTRSFVDF 291


>gi|71281955|ref|YP_269237.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147695|gb|AAZ28168.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 303

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 127/296 (42%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F VV   GSF+ A+ +L++  S+ISRQ+S LE     +L YR  R ++LT +G 
Sbjct: 12  LKAMSTFIVVIDKGSFSAASRELNIVTSAISRQVSDLEDHFACQLLYRSTRAMSLTAEGK 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +   +E  + +  + +   SG L I+            +  +F+ L+P ++I
Sbjct: 72  QYLEQFRNIIGSVEQLENKSDDLNRVLSGHLTISAPSGSASLGFLKSASDFMKLHPKVKI 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +  N+ +++  +  D +IR+ + +  S+ I R+  +  ++  A+  Y+    +P   +
Sbjct: 132 SWLFVNRFVNMVQEGIDLSIRVGE-LPDSNFIARRYGSTQINFVASEQYINQHGKPKHPK 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIAL 243
           EL KH  +    +         W    +       I    + N    + +    G GIA 
Sbjct: 191 ELSKHQCL----VDSSNRFPLRWRYQEEGKEHHAAIDSFAEANDGDIVAKLATEGLGIAY 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LP ++ +   DN  L+ I+ +       V   YP  L     +K+   ++    ++
Sbjct: 247 LPTFLTQQYLDNGTLIPILTEFQFDRIPVSLVYPAKLMINPLMKSLVGYLLEDLKN 302


>gi|264679873|ref|YP_003279782.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210388|gb|ACY34486.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 305

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 125/291 (42%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L  R +R   +T+ G
Sbjct: 3   DLNDLYYFVQVVDYGGFAPAGRALGMPKSKLSRRIALLEESLGVRLLQRSSRRFAVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++    +  + E  Q  +  +   P G +R++  + L    +   L  F++ +P +Q
Sbjct: 63  QEYYQRCQAMLVEAEFAQEVIDRTHEDPQGIVRLSCPLALLDYQVGDMLARFMVQHPRVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+   N+ +D+  +  D A+R+R  P++ S L+ + L        A+P  +        
Sbjct: 123 LQVDSTNRRVDVIREGLDLALRVRFPPLEDSELVMKTLGESTQFLVASPKLVSAMGGMPQ 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +    + GD   +  E +                 +     ++++Q  + G G+ 
Sbjct: 183 LADLSQWP--SLGDGRLQRSEIWQLQGPQGATAEVHYQPRMVCEDRIALLQAALHGVGVV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP  ++ D+     LV +M      +  V+  +P        ++   +F+
Sbjct: 241 QLPAMMILDDLRSGRLVDVMPGWKPRAGIVHAVFPSRRGLLPSVRLLLDFL 291


>gi|115375470|ref|ZP_01462730.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115367513|gb|EAU66488.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 299

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 135/289 (46%), Gaps = 10/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +   V  +G  T AAE+L L +S++SR+++ LE  +G +L  R+ R L LTE G + H
Sbjct: 1   MLLLVEVVATGGITAAAERLGLRKSTVSRRLASLEARLGARLLERNTRRLRLTEAGREYH 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +       L ES   P G LRI  T+ L   LL   + EFLL  P +++++ 
Sbjct: 61  AHCARLVAEAREVNKALIESRGTPQGTLRI-ATLSLLGELLTPLIAEFLLRQPRMRVEVS 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L    +D+  +  D A+R   P+  SSL+ R+L  +H   YA+P YL++   P   ++L 
Sbjct: 120 LAPAHVDLIAEEYDLALRTG-PLVDSSLVMRRLGRLHTGCYASPAYLRHRGTPRVPEDLQ 178

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ +    L+ +   D  W           P    ++V S  +       G G+  LP 
Sbjct: 179 GHDCV----LLAEPGTDEVWFFGEGPSARTLPVEGRIRVPSVRAGQSAARAGLGVVRLPS 234

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +V D+     LV ++E    P   +   YP   +   K++AF   +  
Sbjct: 235 SLVADDVRAGLLVPLLEAETPPGIPILAVYPSRPQLALKVRAFLELLSE 283


>gi|229505812|ref|ZP_04395321.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229510333|ref|ZP_04399813.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229517535|ref|ZP_04406980.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229528058|ref|ZP_04417449.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229605345|ref|YP_002876049.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254850213|ref|ZP_05239563.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|229334420|gb|EEN99905.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229345571|gb|EEO10544.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229352778|gb|EEO17718.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229356163|gb|EEO21081.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229371831|gb|ACQ62253.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254845918|gb|EET24332.1| transcriptional regulator [Vibrio cholerae MO10]
          Length = 300

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 125/298 (41%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 5   MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 65  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 125 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATQEYLAQHAPIE 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   GI
Sbjct: 184 LPQDLTHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +         L  ++ D   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 238 IRLPCDLANPLLRAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 295


>gi|255602559|ref|XP_002537878.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
 gi|223514740|gb|EEF24504.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
          Length = 300

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 123/297 (41%), Gaps = 10/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D +R F  VA   SF+ AA QL ++ ++ S+ I  LE   G+ LF R  R + LTE G
Sbjct: 5   SLDGVRTFLAVAEHRSFSAAAAQLGMTTTAASKAIKTLEQRHGVILFKRTTRSVALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L         +++     L     KP G LR+     LG  +L+  +  F   Y DI 
Sbjct: 65  ADLFTQLRSATSQIDDAFSALNAHRDKPIGTLRLTAPRALGALILKTLIPPFRQRYADIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + LD+  +D+     D  IRL   +    ++ +    +      +P Y ++   P + 
Sbjct: 125 LDISLDDGVVDLVAAGFDAGIRLGHAVAKDMVMVQLTPELIWTVVGSPDYFRHAGRPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I +       +  + +     +         L VN    I ++   G G+A 
Sbjct: 185 AELIHHQTIRYRFPSSGALPRWRF-----KDCEVETRGGLIVNDTTLIAEFARQGQGLAY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LP   +KD+     L  I+ + I  +  +Y  +P   +   KL+   +    +A +W
Sbjct: 240 LPRIEIKDDLLNGRLENILAEDIPQTSGLYLYFPARTQQQHKLRVLID--AARAGNW 294


>gi|161619752|ref|YP_001593639.1| LysR family transcriptional regulator [Brucella canis ATCC 23365]
 gi|161336563|gb|ABX62868.1| transcriptional regulator, LysR family [Brucella canis ATCC 23365]
          Length = 308

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 135/285 (47%), Gaps = 7/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA QL L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARQLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L++H LI + + +       N        I        +V+S L  ++    G+GI
Sbjct: 194 SPEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGI 248

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 249 GILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 292


>gi|170721994|ref|YP_001749682.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759997|gb|ACA73313.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 306

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 137/300 (45%), Gaps = 11/300 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +   GSF+ A  QL    + +S+++S LE  +GI+L  R  R L  T++G +
Sbjct: 10  DELATLLALHEQGSFSAAGRQLARHPTVLSKRLSALEQRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E    +   + E  E +    G+LR+A    +G+  L G L +F+L +P + ++
Sbjct: 70  LVVRVREASRLITEAEQEATEGAASVRGRLRLALPAAMGRRWLSGMLADFVLAHPQVTLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++ +D+  +  D AIR+ + +  + L+  KL        A+P YL    EP   ++
Sbjct: 130 AEYADRFVDLVGEGFDAAIRIGE-LADNRLVASKLCDHVRILCASPDYLARQGEPAKPED 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L KHN + F  L          L   +  +       L+ N   ++++    G GI    
Sbjct: 189 LSKHNCLGFSGLRSFPEWR---LTRGNHQVSVKISGSLRGNDNEALLEAARRGVGILAGG 245

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD---WK 298
           D+++ ++     L+R++       +  +Y   P A  NT  L AF+ ++  + ++   W+
Sbjct: 246 DWLMGEDLAAGRLLRVLAQWELDAAAGIYLVRPSARLNTASLGAFKAWVTDQFKEGPPWR 305


>gi|256258241|ref|ZP_05463777.1| Transcriptional regulatory protein, LYSR family [Brucella abortus
           bv. 9 str. C68]
 gi|297249089|ref|ZP_06932797.1| hypothetical protein BAYG_03131 [Brucella abortus bv. 5 str. B3196]
 gi|297174222|gb|EFH33579.1| hypothetical protein BAYG_03131 [Brucella abortus bv. 5 str. B3196]
          Length = 308

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 7/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPMPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L++H LI + + +       N        I        +V+S L  ++    G+GI
Sbjct: 194 SPEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGI 248

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 249 GILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 292


>gi|91790584|ref|YP_551536.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699809|gb|ABE46638.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 314

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 121/296 (40%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V     F  A   L   +S +SR+++ LE  +G++L  R  R   +TE G
Sbjct: 3   DLNDLYYFVQVVEHQGFAPAGRALGSPKSKLSRRVALLEERLGVRLIQRSTRRFAVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R    +  +    Q  +   S +P G +R++    L    L   L  F+   P +Q
Sbjct: 63  QEYYRHCLAMLVEANAAQEVIDRVSSEPQGTVRMSCPTALLDYQLGDVLARFMAACPRVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--EP 180
           +QL   N+ +D+  +  D AIR+R  P++ + L+ R L        A+P  LK      P
Sbjct: 123 VQLESTNRRVDVIGEGFDIAIRVRFPPLEDTDLVMRVLGESTQRLVASPGLLKARGLVAP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L   +L      +  +  P     ++ L              L  +  L++    + G G
Sbjct: 183 LLPADLGHLP--SLDEGPPHREHAWHLLGPNGASAVVHHTPRLISDDRLALRLAALQGVG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  LP  +V+ +     LV ++      +  V+  +P        ++   +F+ L+
Sbjct: 241 VLQLPTMMVRQDLAQGLLVDLLPQWRPRAAIVHAVFPSRRGLLPAVRELIDFLALE 296


>gi|121587160|ref|ZP_01676935.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121726625|ref|ZP_01679861.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147671568|ref|YP_001215027.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153817673|ref|ZP_01970340.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153821761|ref|ZP_01974428.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227812619|ref|YP_002812629.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|298499821|ref|ZP_07009627.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|121548599|gb|EAX58651.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121630931|gb|EAX63311.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|126511829|gb|EAZ74423.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126520757|gb|EAZ77980.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146313951|gb|ABQ18491.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|227011761|gb|ACP07972.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227015699|gb|ACP11908.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|297541802|gb|EFH77853.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 307

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 125/298 (41%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 12  MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 72  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 132 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATQEYLAQHAPIE 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   GI
Sbjct: 191 LPQDLTHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +         L  ++ D   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 245 IRLPCDLANPLLRAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 302


>gi|90023597|ref|YP_529424.1| LysR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89953197|gb|ABD83212.1| transcriptional regulator, LysR family [Saccharophagus degradans
           2-40]
          Length = 304

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 131/292 (44%), Gaps = 8/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D   L  F  +A S SFT A+E L++++S++S+ IS LE E+G K+F R +R + LTE
Sbjct: 5   TIDLKLLHYFVTIAESLSFTAASESLNIAKSALSKGISKLEDELGTKVFERSSRVVRLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +    +    +++      SG L+IA    LG+ L    +  FL  +PD
Sbjct: 65  AGQILYHRAEVLLEDADHLVSDIKTLQNSVSGHLKIAAPPTLGRMLAAEIIPPFLKQWPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L     D+  +  D A R+    +  +LI+R L   +    AAP YL       
Sbjct: 125 VSISLKLSYDYEDLFKEGLDLAFRMGVN-RDQNLIERPLGRANRVVVAAPDYLAQHAPIR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + F + IP+     N        +       LQ +   ++      G G+
Sbjct: 184 TPHDLLPHKSLQFSNHIPQEWTLQNRAKVEHVTLSV----ALQCSDLAALRNAARAGLGV 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP  +V+D+    +L  ++   ++    +   Y E  +   KL  F  F+
Sbjct: 240 AQLPWMLVRDDINNGHLTHVLPQWLSTGLPIALVYKEGHRKAAKLAEFLKFV 291


>gi|254470681|ref|ZP_05084084.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211959823|gb|EEA95020.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 313

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 136/304 (44%), Gaps = 13/304 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  + +R+F  V   GS + AA  +H+S +  S +I  LE  +GI+LF R  R +  T
Sbjct: 1   MSY-INNVRMFVRVFELGSMSAAARDMHVSPAVASSRIGELEKHLGIRLFNRTTRTIQPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQGS  +    ++   +E  +  + E +  P G + I+  + +G+ L+   + EF   YP
Sbjct: 60  EQGSIFYPGARKMLEAMEEAEAAVHEVTNTPRGSIFISAPLGIGRRLIAPLIPEFHEAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L L ++ ++I+ +  D A  L + + +S +  + L+       A+P YL    EP
Sbjct: 120 EIHVRLRLSDRPLNITGEGLDLAFILGQ-LPNSEMRLKNLLDCPRVLCASPAYLDRRGEP 178

Query: 181 LSIQELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
               +L    H+ +      P   E+   L T +             +    ++ + +  
Sbjct: 179 KQGADLQHGKHDCLLL--QFPGSSENRWVLQTSEGKQSFAVGGPFTSDDGDVLVNWALEH 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYF--CYPEALKNTGKLKAFRNFIFLK 293
            GI   P + V D+    +LV I     TP   V+    +P       K++ F  F+  +
Sbjct: 237 HGIINAPLFDVVDHLLSGDLVAICT--ATPPSNVHLACLFPHRRYQDPKIRLFLKFVSAR 294

Query: 294 ARDW 297
            + +
Sbjct: 295 LKAY 298


>gi|311104771|ref|YP_003977624.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310759460|gb|ADP14909.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           49 [Achromobacter xylosoxidans A8]
          Length = 306

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 125/289 (43%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR-GLTLTE 61
            DWD LR F  VAR+   + AA +L +  +++SR+I  LE E+   LF +    G  LTE
Sbjct: 2   LDWDSLRYFLEVARTQRVSAAARKLGVEHTTVSRRIRALEAELDTLLFEKSRSAGFVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   + + +  L       SG LRI  T   G  +L     +F   YP 
Sbjct: 62  DGQRLFVHAEQMESTVHSARENLSGIGQALSGHLRIGATEGFGSYVLTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    +  KL    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCSKLCDYTLRLYGTPGYLARHPPIR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H+ I + D +      F+        +       L+  S ++     + G  +
Sbjct: 181 ERADLAEHSFIGYVDEL-----LFSERLRYLEDLLPASKVVLRSTSVVAQYHAALQGQSL 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I   +P L  ++ D +  + + +    E L+   ++ A  +FI
Sbjct: 236 AILPCFIAAQDPRLTPVLADEVEITRSFWMYCHEDLRKLKRVTALWDFI 284


>gi|317047946|ref|YP_004115594.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949563|gb|ADU69038.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 302

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 124/296 (41%), Gaps = 15/296 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D+L+VF  V + GS   AA +L  S   I+R ++ LE   G  L  R  R L  TE
Sbjct: 1   MDRFDELQVFVTVIQQGSLAAAARRLQRSPPVITRTLAALEQRFGTTLIERTTRQLAPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++    +              G LR+   +  G+  +   +  FL  +P+
Sbjct: 61  AGWQLFEQARQLLTDYQAAMD--SAHHSGLQGLLRVTAPVQFGRRHVMPLVNAFLARHPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ++L+L +   D+  +  D A+R+ + +Q SS++ R++ T+     A+P YL+    P 
Sbjct: 119 IQLELVLSDSYQDLIDNGLDIALRIGE-LQDSSMVARRVGTVRSMLIASPAYLQRAGFPP 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L +H LI          +   W     R +       L+VN   S +       GI
Sbjct: 178 HPSALSEHALIA------GTRQTREWRFA--RDVRVRITPRLRVNEVESQLLALRSHQGI 229

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             L  Y V D+     L+R++ +    +  V          T K++ F +F   + 
Sbjct: 230 GRLLSYQVLDDLRAGTLIRLLPEWEPAALPVQLVTQRVRNMTPKVRQFWDFALTRL 285


>gi|15640912|ref|NP_230543.1| DNA-binding transcriptional activator GcvA [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121588120|ref|ZP_01677867.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121729625|ref|ZP_01682118.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147675583|ref|YP_001216373.1| DNA-binding transcriptional activator GcvA [Vibrio cholerae O395]
 gi|153216610|ref|ZP_01950537.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|153802278|ref|ZP_01956864.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|153817183|ref|ZP_01969850.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153824195|ref|ZP_01976862.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|153827045|ref|ZP_01979712.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|153831333|ref|ZP_01984000.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|227081071|ref|YP_002809622.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229505499|ref|ZP_04395009.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae BX 330286]
 gi|229510831|ref|ZP_04400310.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae B33]
 gi|229513005|ref|ZP_04402471.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae TMA 21]
 gi|229517952|ref|ZP_04407396.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae RC9]
 gi|229523307|ref|ZP_04412714.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae TM 11079-80]
 gi|229530002|ref|ZP_04419392.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae 12129(1)]
 gi|229608518|ref|YP_002879166.1| DNA-binding transcriptional activator GcvA [Vibrio cholerae
           MJ-1236]
 gi|254285568|ref|ZP_04960532.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|254848031|ref|ZP_05237381.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|262161181|ref|ZP_06030292.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae INDRE 91/1]
 gi|262168684|ref|ZP_06036379.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae RC27]
 gi|297581280|ref|ZP_06943204.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298498983|ref|ZP_07008790.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9655351|gb|AAF94058.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121547611|gb|EAX57710.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121628602|gb|EAX61080.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|124114182|gb|EAY33002.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124122160|gb|EAY40903.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|126512217|gb|EAZ74811.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126518283|gb|EAZ75508.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146317466|gb|ABQ22005.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|148873182|gb|EDL71317.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|149739086|gb|EDM53382.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|150424430|gb|EDN16367.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|227008959|gb|ACP05171.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227012715|gb|ACP08925.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|229333776|gb|EEN99262.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae 12129(1)]
 gi|229339670|gb|EEO04685.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae TM 11079-80]
 gi|229344667|gb|EEO09641.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae RC9]
 gi|229349898|gb|EEO14852.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae TMA 21]
 gi|229350796|gb|EEO15737.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae B33]
 gi|229357722|gb|EEO22639.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae BX 330286]
 gi|229371173|gb|ACQ61596.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae MJ-1236]
 gi|254843736|gb|EET22150.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|262022802|gb|EEY41508.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae RC27]
 gi|262028931|gb|EEY47584.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae INDRE 91/1]
 gi|297534596|gb|EFH73433.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297543316|gb|EFH79366.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 306

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 122/294 (41%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L     +L E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFSSLAEATDKLLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +    + 
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-SWPGLRADKLYQEFLIPLCSPALLLGNKPMEKLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+   A  +             +    ++Q    G G+AL 
Sbjct: 185 DLAYHTLLH-----DTSRKDWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 240 NNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 293


>gi|148259690|ref|YP_001233817.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146401371|gb|ABQ29898.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
          Length = 298

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 118/291 (40%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+++  VAR GSF+ A  +  +SQ  +SR I+ LE E+G +L  R  R +  TE G
Sbjct: 3   DIAALKLYTRVARLGSFSAAGRESGMSQPQVSRMIAELEQELGARLLSRTTRAVVPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +   L+     ++E      G LR++     G ++    L +F   +  +Q
Sbjct: 63  KAFLLRIEAILAALDEAGQSVREGGEF-HGMLRLSMPTSFGIHVAIPRLADFAARHSRLQ 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L LD++  D+  +  D AIR+     S+S   R++  +     A+P YL     P   
Sbjct: 122 IHLELDDRRQDLVREAVDVAIRIGALPDSASATARQIALVSRVIVASPAYLAANGAPARP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H +I              W    D      R+      N     +   + G GI 
Sbjct: 182 EDLAGHRII----RGAAAANPLAWTFERDGESIAARVQPQFTTNDNEGAIVAAIAGLGIT 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++  +   ++ +LVR++ D       V+  +P         +A  + +
Sbjct: 238 STGEWECRRALEDGSLVRLLTDWTMADVPVHAYFPMGRNTRAAARALIDHL 288


>gi|90422373|ref|YP_530743.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104387|gb|ABD86424.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 313

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 141/297 (47%), Gaps = 7/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D + L +F+ V  + S + AA +L + +S+ISR+I  LE + G  LF +  R LT T+
Sbjct: 4   KLDLNALLLFFEVTNARSISAAAAKLGIPKSTISRKIQFLEDQTGATLFRKGCRKLTTTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +  ++E   +       +  G LR++  +D G   L   +  F + YPD
Sbjct: 64  IGQTLYEHCERIAAEIEEAGLGTARMQTELRGTLRVSMPVDFGIGWLSSAIAAFAVTYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + +  +++ +D++++  D A++L  P+  +    R L +I    YA+P +L+    PL
Sbjct: 124 IHLVIDANSRWVDVTVEPYDVAVQLG-PLPQTQGGTRPLASITRGVYASPEFLRRAGSPL 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +  + + +       + + +F    +            + VN      +  + G G+
Sbjct: 183 NIDDFGRFDCVVTEHQRAEGVWNFR---SAQGAKVINVAGRITVNHIGIARELVIGGVGL 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LP+ + +++     L R++ D  +P+  V   +P   K + +L+ F +F+  K +
Sbjct: 240 GILPNIMCQNDVRAKRLSRVLTDWESPALQVSATFPGKRKESRRLRTFLDFLEQKLK 296


>gi|254563848|ref|YP_003070943.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254271126|emb|CAX27133.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           DM4]
          Length = 301

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 128/297 (43%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RV   VA SG F  AA  L +S ++++R ++ LE  +G +LF R  R + LTE
Sbjct: 1   MDRLQGMRVVVRVAESGGFAGAARALSMSPAAVTRAVAALEAVIGARLFIRTTRSVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++   +     S+  P+G L +   +  G+  +   + ++L  +P 
Sbjct: 61  AGGRYLEDCRRILAEIAEAEATAAGSTATPTGVLTLTAPVQFGRLYVLPVVTDYLARHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ +  ++ +++  +  D  +R+   +  S L   ++ ++     AAP YL+    P 
Sbjct: 121 VAVRALFLDRIVNLIEEGIDVGVRIGH-LADSGLTATRVGSVRRVVCAAPSYLERHGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H +I  G   P  + +  W    +        + L  N+  + +   + G GI
Sbjct: 180 TPRDLRDHAVI--GASNPGALPE--WRFGPEGRTTVSVHARLVCNTVDASLAAALDGWGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L  Y V        L  ++ +       ++   PE  +   K +AF +    + R
Sbjct: 236 ARLLSYQVAPAVAEGRLRILLSEDEEAPVPIHVVSPEGRRAPAKTRAFVDLAAARLR 292


>gi|83717658|ref|YP_438933.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167615458|ref|ZP_02384093.1| LysR-family transcriptional regulator [Burkholderia thailandensis
           Bt4]
 gi|257142034|ref|ZP_05590296.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651483|gb|ABC35547.1| LysR-family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 306

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 132/302 (43%), Gaps = 13/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G
Sbjct: 3   SLDRFDVFRAVVEAGSFTGAANVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVELTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E    + +       G LR+ +T++    ++   L+EF+ ++P ++
Sbjct: 63  ERFYARCLRVLAEAEEAIDDARGEHGGMQGSLRVTSTVEYALAVVAPALREFMSMHPALR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL   +  Q        + T  +   A+P  L       
Sbjct: 123 VRLETHTSQADLVRDRFDVAIRLGRFEQFQDLPFRGVCIDTYDVRPVASPALLAAHGVAR 182

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S   L +   +    L       + D +    V RP  +P    L  ++   +  +  
Sbjct: 183 IESPDALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLRAFAR 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GSG+ALLP+++V+D+     LV  + D       VY  YP       K++A+ +FI   
Sbjct: 240 QGSGVALLPEWLVRDDLDNGTLVDALPDYRFAQQGVYALYPSTRHVPQKIRAWVDFIKRY 299

Query: 294 AR 295
            R
Sbjct: 300 VR 301


>gi|260777469|ref|ZP_05886363.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607135|gb|EEX33409.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 296

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 133/295 (45%), Gaps = 13/295 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AAE L +S+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLIAIRSFVEVANAKSFTKAAESLDISRLQVSRHVQEVEHWLQQRLLHRTTRKVSLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  +    +++         G +R+A  I   QNLL   ++ F+ L+P 
Sbjct: 61  AGEQAFVRCQRILDEAAALELDSMCGKDALVGTIRVAAPIGFAQNLLIDRVQNFVSLHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I ++  +++ ++  +  D A+R        +LI R+L+ I     A+  YL    EP 
Sbjct: 121 VVIDILASDQNSELVDERVDVALRFTDKPAD-NLIARRLMAIDTAICASRDYLSEFGEPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
             +EL  HN +T  ++        NWL   D    +  +S  ++ N   ++++  V G G
Sbjct: 180 HAEELVDHNCLTHLNVK-------NWLFVKDNQTVDVEVSGNIRANDLSTLVRVAVNGKG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  LP  +     +   L+ I+ D   PS+ ++  Y         ++ F +++  
Sbjct: 233 VIRLPCDLANPLIEKGELLSILNDYHYPSYALWAVYLSRSYQQPIVRQFIDYLVE 287


>gi|254506911|ref|ZP_05119050.1| AphB/LysR family protein [Vibrio parahaemolyticus 16]
 gi|219550196|gb|EED27182.1| AphB/LysR family protein [Vibrio parahaemolyticus 16]
          Length = 266

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 128/267 (47%), Gaps = 9/267 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +  ++I+R+I  LE  + ++L  RHAR L+LTE G + +   S +  +L  T  E+ +  
Sbjct: 2   IPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGERFYSECSPLLDRLTLTAEEISDEC 61

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
              +GK+RI    +L + ++     +F+  YPDI ++L   N    +     D   R+  
Sbjct: 62  RGAAGKIRITAPSNLTKRMMMPMFNDFMKQYPDINLELTTSNHSEQLDPTEWDVIFRVG- 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P + SSLI RK+ ++     A+P YLK    P   +EL  H+L+    L+   + + N  
Sbjct: 121 PQRDSSLIARKINSVEDILVASPEYLKTNPAPKHAEELHNHSLLKGAPLLKWQLSNQNGE 180

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITP 265
             V+   G       Q N+   +   C  G GI L+PD ++K   D+ +LVR++ED    
Sbjct: 181 TVVNNDKG-----RFQANALNVVRSACSDGLGITLMPDVMLKEFIDDGSLVRVLEDWSAN 235

Query: 266 SFTVYFCYPEALKNTGKLKAFRNFIFL 292
              +Y  Y        K++ F +F+  
Sbjct: 236 PRDIYMLYNHKDHLPEKVRLFIDFVIA 262


>gi|170721659|ref|YP_001749347.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759662|gb|ACA72978.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 299

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 131/290 (45%), Gaps = 10/290 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R+F     +  F+ AA +L ++ SS++R +  LE+ +G  L  R  R +TLTE G++ 
Sbjct: 6   AMRMFAATVDAQGFSAAARKLGVATSSVTRLVDALESALGATLLNRSTRQVTLTEAGARY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E++  L+     + +   +P G LR+   ++ G+ ++  +L +FL  +  +++ +
Sbjct: 66  YARAREIFEALDKADASVADRGEEPVGVLRLCLPVEFGRRVIAPHLGQFLARHRALELDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++  D+     D +IRL  P  S  L+ R+L        A+P YL  C       +L
Sbjct: 126 DMSDRVDDLLGGRYDLSIRLGDPAPSEELVCRQLGRFERWLVASPDYLAGCEPLQHPGQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  + F             L   D  +       L+  +   + +  + GSGIALL D
Sbjct: 186 LDHACLRFSYGPMVRPWR---LRLGDEVLELDVRGPLRSANADLLREAALAGSGIALLAD 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNF 289
           ++V+++     L R+ +       T    +   Y    + + +++AF  F
Sbjct: 243 WLVREDVAAGRLRRLFDTWQISPGTANASINALYLPNHRGSRRVQAFIRF 292


>gi|329896573|ref|ZP_08271604.1| transcriptional regulator, LysR family [gamma proteobacterium
           IMCC3088]
 gi|328921680|gb|EGG29054.1| transcriptional regulator, LysR family [gamma proteobacterium
           IMCC3088]
          Length = 312

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 118/296 (39%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSF  AAE+L +SQS+IS Q+  LE  +G+ LF R  R + L  +G+
Sbjct: 13  LNALRAFEAAARHGSFKLAAEELSVSQSAISHQVRSLEEYLGVHLFVRQIRAVELNRKGA 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             + V  +   ++      +    +     L +          L   L EF   +P++Q+
Sbjct: 73  MYYPVLRDALDRISDATELVVSDRLST--TLTVQVYSTFTIRWLLPRLAEFQRAHPNLQV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L     D++   D  D AI + +   +S L    L    +    +P YL+         
Sbjct: 131 RLHTSQDDVNFDQDDIDLAIMIGRA-SNSQLHYTHLFDSELFPVCSPQYLERHGRFHDPA 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E+  H ++    + P   +   WL +          S LQ  SY   +     G GI + 
Sbjct: 190 EIRDHPIL---QVYPSAGDWHVWLESQGIDADVVPESGLQFESYDVALSSAAQGMGIGIG 246

Query: 245 PDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               V  +    +LV +  D         Y        +  K++AFR+++  +  +
Sbjct: 247 QQPYVAHDLAVGSLVELFPDKRVKNPNAWYLVGRHEKADMPKIQAFRDWLLGEVAN 302


>gi|330819589|ref|YP_004348451.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327371584|gb|AEA62939.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 329

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 126/287 (43%), Gaps = 8/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F  +  SGS + AA  L  +Q ++SR++  LE  +G++L  R    + LT  G 
Sbjct: 29  FQLMETFVRIVESGSLSAAAALLRTTQPTVSRRLQALERSLGVRLLQRSTHSMRLTVDGE 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +   E+     + + +L+ +  +P G LR+      GQ +  G L  FL  +P + +
Sbjct: 89  RAFKRAKELLASWASFEADLRGAQQEPEGHLRVTVPHAFGQQIFVGPLIGFLREHPRVSV 148

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D      DCAI++ + +   S++  ++  +     AAP   ++ R P + +
Sbjct: 149 EWLLQDEVHDFIGTGIDCAIQIGE-VTDPSVVAIRIADVARFVVAAPSMFEDGRIPATPE 207

Query: 185 ELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL   + ++       + +          R   +PR+S    ++  ++    + G G+ +
Sbjct: 208 ELAALDWLSLRTYYRNEVVLRHRRSGETQRFTIQPRVS---TDNLFALRSAALHGMGVGI 264

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
              +++ +      LVR+  D       V+  YP A     +L  F 
Sbjct: 265 GSSWLLAEELEAGRLVRVAPDWEAAPLPVFLVYPHAQFYPSRLLRFV 311


>gi|261339086|ref|ZP_05966944.1| hypothetical protein ENTCAN_05298 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318921|gb|EFC57859.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 300

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 118/292 (40%), Gaps = 5/292 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   V R GSF  AA++L +S +++S  ++GLE+ +  +LF R  R + LT+ G 
Sbjct: 6   LTELEVVMAVVRRGSFRGAAQELGMSATAVSNAVAGLESRLDTRLFNRTTRSVALTDAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +          ++     E+   + +P+G LR+     +G   L   L +F++ YP +++
Sbjct: 66  RYVARIGPALQEIRQASEEIHSDTGEPAGTLRLNVPNHIGTLFLDRLLIDFMIRYPKMRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + + + + IDI  +  D  IRL++ +    +       I     A P Y      P +  
Sbjct: 126 ETVSEARMIDIVAEGYDAGIRLQESVPQDMIAVPLTADIRQLVTATPGYFAQHGIPQTPD 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I               LA                +   + +     G G+  L
Sbjct: 186 DLLQHQGIGMRMSHGGIYRWE--LARRGETCTLAVPPRFATSDLFASIAAVKAGLGVGFL 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P+  ++D   +  LV ++ D   P   +   YP        L+A    I  +
Sbjct: 244 PELYIQDELKSGELVSVLNDWTQPFAGLRLYYPGHRHVPPGLRALVAMIRER 295


>gi|78061771|ref|YP_371679.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969656|gb|ABB11035.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 300

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 125/297 (42%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 3   IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 63  EAALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPILAQLRRNHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P+Q  +L+ R++  I +  YA   YL     P
Sbjct: 123 GLVIELVPTDRIQDVLKREADIAVRMAPPVQ-EALVARRIGEIDVALYARDDYLARNGSP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I EL  H LI F  + P     F        P+ +     L+ +S ++ +     G G
Sbjct: 182 TTIDELAHHPLIGFDTVTP-----FIRSMGRSMPLWKRDAFALRTDSNVAQLAMIRAGYG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I      + K +P LVR++ D        +    E L+++ + +A  + +    R +
Sbjct: 237 IGFCQSGLAKRDPRLVRVLPDGPAMQLETWGVMHEDLRSSPRCRAVFDALADGLRAY 293


>gi|300718354|ref|YP_003743157.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299064190|emb|CAX61310.1| Putative transcriptional regulator, LysR family [Erwinia billingiae
           Eb661]
          Length = 311

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 124/291 (42%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +  F  +  SGS + AA +L  +Q +ISR++  LE  +G+KL  R    + LT+ G 
Sbjct: 12  IELMHTFVRIVESGSLSAAALRLSTTQPTISRRLQSLERLLGVKLLQRTTHVMKLTDDGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+  + +  + +L+ ++ +P G LR+      GQ+ +   L+++L  YP + I
Sbjct: 72  RCFAHAQELVERWQAIEDDLRGAAEEPKGVLRVLVPHAFGQDQMIAPLQDYLQRYPKMTI 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D   +  DCA+ +   +   S++   +  +     AAP  L N  +     
Sbjct: 132 EWMLSDRRPDFIAEGIDCAVHVGA-LTDPSVVALLVAEVPRIVVAAPALLDNASDIDQPA 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +   +       + +   +      R    P+   L  +S  ++    + G G+ + 
Sbjct: 191 ALAELPWVALSTFYRQEVVLNSEQGNTQRIDIRPQ---LLTDSLYALRNSVLAGMGVGIA 247

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             + VK++     L  +  D       VY  YP A     KL+ F   +  
Sbjct: 248 SSWAVKEDIEQGRLRHLCPDWHAAPLPVYLVYPYARFYPAKLRQFLALMRE 298


>gi|207725121|ref|YP_002255518.1| hypothetical protein RSMK03536 [Ralstonia solanacearum MolK2]
 gi|206590353|emb|CAQ37314.1| hypothetical protein RSMK03536 [Ralstonia solanacearum MolK2]
          Length = 308

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE
Sbjct: 3   TMEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P+
Sbjct: 63  AGSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQYLTEPVCQALARFPN 122

Query: 122 IQIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +QIQ+ +  +  D+     D   + + + +  SSL+ R++V I    YAAP  L      
Sbjct: 123 LQIQVQISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAGRAPL 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L     ++  D            A+   P+  P    LQ  +    ++  V G G
Sbjct: 183 ATPADLAGWPCLSGPDDANWGFRPAG--ASAAAPLEVPIQPRLQTLNAEMRVRAAVRGLG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A +   +     +   LVR++ D       VY   P       K++ F + +  +
Sbjct: 241 VARMARSVGDAEVETGRLVRVLSDYEPTPLRVYALMPARKLVPRKVRVFLDALEAQ 296


>gi|206581096|ref|YP_002238803.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288935734|ref|YP_003439793.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290509760|ref|ZP_06549131.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206570154|gb|ACI11930.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288890443|gb|ADC58761.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289779154|gb|EFD87151.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 304

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 121/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  ++ +  ++ + GSF  AA  L+LS  +++  I+ LE ++G++L  R  R L+LT  G
Sbjct: 6   DLQQIEILILIVKHGSFRQAARALNLSPPALTSAINHLEEKLGVRLLNRSTRSLSLTAVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     + V +        L    + P G +++     +     Q     F   YPD+ 
Sbjct: 66  EEFLNNMTPVVNDYRRVVDSLNYHRLTPEGVVKVNLPRIVLDLFFQHYFIAFKTAYPDVT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLS 182
           ++L   ++ ++I     D  IR  + +    +I       + +   A+P Y++   EP +
Sbjct: 126 LELYTTDRKVNIIESGFDAGIRYSQDVPKD-MIAIPFGEKLSLIPVASPAYIREAGEPDT 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q L     I            + +++    P        L V+S  +++Q    G GIA
Sbjct: 185 PQSLVNFRCIN-RCFPSGEKYRWEFISPSGEPSEVSVRGDLVVDSDTAMIQAAESGLGIA 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +   +V       +LVR++ D   P+      YP        L+AF  ++  +
Sbjct: 244 FVYQSLVTQQLSAGSLVRLLPDYHYPADHFCVYYPSRKHIPVPLRAFITWVMAQ 297


>gi|163845410|ref|YP_001623065.1| hypothetical protein BSUIS_B1310 [Brucella suis ATCC 23445]
 gi|189024909|ref|YP_001935677.1| LysR family transcriptional regulator [Brucella abortus S19]
 gi|225628384|ref|ZP_03786418.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|237816197|ref|ZP_04595192.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|254689986|ref|ZP_05153240.1| Transcriptional regulatory protein, LYSR family [Brucella abortus
           bv. 6 str. 870]
 gi|254694477|ref|ZP_05156305.1| Transcriptional regulatory protein, LYSR family [Brucella abortus
           bv. 3 str. Tulya]
 gi|254698136|ref|ZP_05159964.1| Transcriptional regulatory protein, LYSR family [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254700475|ref|ZP_05162303.1| Transcriptional regulatory protein, LYSR family [Brucella suis bv.
           5 str. 513]
 gi|254717570|ref|ZP_05179381.1| Transcriptional regulatory protein, LYSR family [Brucella ceti
           M13/05/1]
 gi|254731020|ref|ZP_05189598.1| Transcriptional regulatory protein, LYSR family [Brucella abortus
           bv. 4 str. 292]
 gi|256160528|ref|ZP_05458217.1| Transcriptional regulatory protein, LYSR family [Brucella ceti
           M490/95/1]
 gi|163676133|gb|ABY40243.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020481|gb|ACD73203.1| Transcriptional regulatory protein, LYSR family [Brucella abortus
           S19]
 gi|225616230|gb|EEH13278.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|237788659|gb|EEP62872.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
          Length = 308

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 7/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L++H LI + + +       N        I        +V+S L  ++    G+GI
Sbjct: 194 SPEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGI 248

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 249 GILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 292


>gi|161526048|ref|YP_001581060.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189349237|ref|YP_001944865.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia multivorans ATCC 17616]
 gi|160343477|gb|ABX16563.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189333259|dbj|BAG42329.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia multivorans ATCC 17616]
          Length = 305

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 122/294 (41%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G 
Sbjct: 9   LNALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +  ++   SG L I+ T       L   L  F    PD+ +
Sbjct: 69  DYLPPVRNAFRQIADASQRVSGAAD--SGVLTISVTPFFASAWLVPRLARFRDACPDVDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  +   D + D  D AIR     + + L    L+T+ + A A+P  +     P +  
Sbjct: 127 QIVTSHALADFARDGVDVAIRHGLG-RYAGLCSEHLLTVEIVALASPELVARLGMPRTPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L         D   K    +     +D   G PR      +    ++Q  V G G  LL
Sbjct: 186 DLVDWP--HLHDAERKGWHTWFDAQRID-DFGPPRGPAF--DDAGLLLQAIVAGQGAGLL 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V+    N  LV++ +      F  Y  YP       K+ AFR ++   AR
Sbjct: 241 PAAMVRGELANGRLVQLADVARLDDFAYYLVYPPHHAERPKVAAFRRWVLDAAR 294


>gi|145300039|ref|YP_001142880.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852811|gb|ABO91132.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 302

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 122/293 (41%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  +L VF  VAR  SF+ AA +L +S S++S  + GLET +G++L  R  R +  T+ G
Sbjct: 7   DLAELAVFAAVARHQSFSKAALELGVSASALSHSLKGLETRLGVRLLNRSTRAVVPTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L        + LE    EL   S +P G+L+I+   +   +LL   L ++++ YP +Q
Sbjct: 67  QRLLEQLLPTLNTLEEALDELAHHSNEPVGRLKISAPREAINDLLAPVLIDYMVRYPRMQ 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA-APHYLKNCREPLS 182
           ++++       +  D  D AI     +    +I   L     +    +P YL     P  
Sbjct: 127 VEVVEQELMPRLIEDGYDAAIFYGDLLPKE-MIGVPLGPHQRYLVVGSPAYLSKHGTPQH 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL +H  I +  L P     + +       +       L  ++    +     G G+A
Sbjct: 186 PRELSRHACIGYR-LTPSHHYRWAFTEGKGSMLEIEVTGPLTTSTPALYLGAAEAGLGLA 244

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             P+  V        L+R++E            YP   +    L+A  + +  
Sbjct: 245 YCPEEEVSKQLAEGKLLRVLEPWCPTFVGFSLFYPSRHQLGKGLRALIDMLKA 297


>gi|186470480|ref|YP_001861798.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196789|gb|ACC74752.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 313

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 10/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    ++A  G++T AA +L +S++++S++IS LE   GI L  R  R + LTE G 
Sbjct: 10  WTHLHWLTMLAEQGTYTAAAARLGVSKAAMSQRISELERAAGISLVQRTTRSVRLTEAGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T   Y ++  +  +++E S  P G++R+   +   +  L   L EFL   P +++
Sbjct: 70  QLVDATRGQYAQIAASFAQVRELSGVPRGQVRVTAPVAFARQQLVPKLPEFLSANPAVRV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ + ++ +  D AIR       +  +  KL        A   YL+    P S  
Sbjct: 130 QLEVSDRLVSLATEGFDLAIRHTAEPPDTH-VAWKLCDTRSVIVATRAYLRKRGMPKSPD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNW---LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           EL  H+ + +   + + M  F          RP+  P       N+  ++    +   GI
Sbjct: 189 ELASHDCLFYPRSMGEPMWSFERKSARKNTARPVALPVKGPFCANNSETLRDAALESLGI 248

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLK 293
           AL+PD+  +       LV ++ D          +Y   P A      +  F  ++  +
Sbjct: 249 ALVPDFTAQAAVQAGKLVVVLPDWRVTGAFAEQLYILRPYASHVPRAVGLFVGYLRER 306


>gi|86356579|ref|YP_468471.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280681|gb|ABC89744.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 332

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 125/289 (43%), Gaps = 9/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F     + S + AA +L + ++++SR+++ LE  +G +L  R  R L LT+ G   
Sbjct: 9   ELVAFTKTVDAKSLSRAAAELRVPRATVSRRLARLEERLGARLLRRTTRSLVLTDIGEVF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R        +   +  ++ +     G LR++    +  +     L EF  LYP++++ +
Sbjct: 69  YRQACIALKAVRLAEQSVRMTDDVVRGDLRVSVPPMMSVSFHA-MLCEFASLYPELRVHV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + N+ +DI     D A+R    +Q   LI R L    M A AAP YL     P + ++L
Sbjct: 128 HISNQLVDILHGGYDVALRASSQLQ-PGLIARTLFRDPMIAVAAPAYLAGRGTPRTQRDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +         + + +W       +          N    +    + G GIALLP 
Sbjct: 187 RTHRCLL--GFARGELPETHWPLASGGKLHVD--GAFFSNDIALLCDAAISGLGIALLPR 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +V    ++  LV+++  V+     +   YPE      +++AF + +  
Sbjct: 243 GLVSPHLESGALVQVLAGVLGAEMQIALVYPERAFLPPQVRAFIDAVAA 291


>gi|37675886|ref|NP_936282.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|320158034|ref|YP_004190412.1| lysR-family transcriptional regulator [Vibrio vulnificus MO6-24/O]
 gi|37200426|dbj|BAC96252.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319933346|gb|ADV88209.1| lysR-family transcriptional regulator [Vibrio vulnificus MO6-24/O]
          Length = 300

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + LR F  +A  GS + AA  L + ++ +SR +S LE  VG +L +R  R  +LT+
Sbjct: 1   MDRLEALRAFVAIAEQGSLSGAANVLEIERTKVSRYLSELEEWVGSRLLHRTTRKQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +   +  ++              +   SGKLRIA+   L ++ L   ++ F   +P+
Sbjct: 61  AGEQTLALAYQMLSLSNEVSAIRDRQNNTLSGKLRIASAYSLIEHFLLQAVEAFCAQWPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L++ +    +  +  D A+R+   + +  LI R++        A P YL+    P 
Sbjct: 121 VQIELLVADSSTHLIEEGVDLAVRITNDL-APGLIARQMGVCRSALVATPAYLEQFGHPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  ++F            +L   +R         +  N    ++   + GSGI
Sbjct: 180 QPSDLPAHRCLSFSYFGKNRW----YLTRDNRRESIDIQGPITANISTIVLSATLHGSGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  P   V  +     L+ ++ D       VY  Y    + T   + F +FI  +
Sbjct: 236 SQQPYAAVAPHLAQGRLLPVLPDWQPDELGVYLVYSSRKQITPLHRQFIDFICQR 290


>gi|295680773|ref|YP_003609347.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440668|gb|ADG19836.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 300

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 128/295 (43%), Gaps = 6/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D + VF  V  +GSFT AAE+LHL++S+I + I+ LE  +G++L  R  R  TLTE
Sbjct: 1   MDQLDGVAVFVKVIEAGSFTVAAERLHLTRSAIGKVIAKLEARLGVRLLQRTTRSQTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +        +L+  + EL+    +P G+LR++  +  G + +   L      +P 
Sbjct: 61  AGRSYYDRCVRALAELDAAEAELETGYSEPRGRLRVSAPLAFGHHCVAPVLFGLARKHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI +   ++ +D+  +  D A+R+     S+SL  R L        AAP YL     P+
Sbjct: 121 LQIDISFTDRAVDLVEENFDLAVRIGDLRDSTSLAARHLGVQETSIGAAPAYLARYGTPV 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +  KH  I +       +  +  L T            L ++   +I    V G G+
Sbjct: 181 DIGDFGKHAGIAYSRA--GVVSPWRVLDTDGVERELLIEPQLSLDDIQAIAGAGVAGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             LP +++        LV + E        ++  +P       K +   + +  +
Sbjct: 239 VQLPCWLLTRYVMTGELVAVRERCGVRPQDIHAVWPNTRYLPLKTRCAIDALVAE 293


>gi|300691543|ref|YP_003752538.1| transcription regulator protein, lys-R family [Ralstonia
           solanacearum PSI07]
 gi|299078603|emb|CBJ51260.1| putative transcription regulator protein, Lys-R family [Ralstonia
           solanacearum PSI07]
          Length = 318

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 129/294 (43%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AA++L L +SS+S  +S LE ++G++LF R  R L LT+ G
Sbjct: 5   DWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGVRLFERSTRRLRLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +     L   + E +  +  ++
Sbjct: 65  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAARQLAEVVLEVMREHAGLR 124

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ +  + +D      D  + + R+P+  S ++ +++  +      AP  L+     + 
Sbjct: 125 IEVDVAPRQVDPLAQGYDIMLTVPREPLPDSGMVAQRVFDLRRAVVVAPALLETLGPLIH 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +           ++ + A    P+  P    ++ ++    +Q  V G G+A
Sbjct: 185 PDQLIDWPCLGLSSES-----EWQFRAPGGEPLNLPLDFRMRTSNSELRLQAAVAGLGVA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +     ++      L  ++ D  +P   VY  +P       K+K F + +  +
Sbjct: 240 RITSAFAEELIATGALREVLTDFQSPPMRVYAVFPGRRLMPAKVKVFMDALHRR 293


>gi|21229518|ref|NP_635435.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766390|ref|YP_241152.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188989440|ref|YP_001901450.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21110982|gb|AAM39359.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571722|gb|AAY47132.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167731200|emb|CAP49372.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 300

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 121/296 (40%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + ++  V RSGSF  AA +L  + +S+SR++  LE ++  +L  R  R LTLT+ 
Sbjct: 5   IDLNDIALYVQVVRSGSFAEAARRLGTAPNSVSRRVQQLEAQLDTRLMQRSTRKLTLTDA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    +    L      L     + +G +R+A   D         + +FL  +P +
Sbjct: 65  GQAFYERCGDAVDGLTDAGQSLVAGGEEVAGLVRVAAPADFLDFFRVEWVADFLAAHPRV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPL 181
           +++ +L +   D+  +  D A R    +  SS + R  L        A+P YL+    PL
Sbjct: 125 RLEFLLSDARADLIAERIDVAFRAG-ILADSSYVGRPILADNRDVLVASPGYLQARGRPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + EL +H+ +      P     +  +            +    N+  ++    V G GI
Sbjct: 184 RLDELPQHDCLGIPH--PSGHVSWTLVGPSGLAETVQVPTRFAANTARALRLAAVAGLGI 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP  +   +     LV ++ D       V+  YP        + AF   +  + 
Sbjct: 242 ALLPQALTWPDVAEGRLVTVLPDFQRNGQGVHALYPSRRHQPRAVTAFIEAVSARL 297


>gi|260599404|ref|YP_003211975.1| hypothetical protein CTU_36120 [Cronobacter turicensis z3032]
 gi|260218581|emb|CBA33836.1| hypothetical protein CTU_36120 [Cronobacter turicensis z3032]
          Length = 301

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 130/291 (44%), Gaps = 12/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F   A+S SF+ AA  L ++ ++IS+ +  LE  +G  LF R+   + LTE+G+ 
Sbjct: 17  RLLPAFLAAAQSQSFSAAARLLGVTPAAISKSVRQLEARLGRVLFQRNTHFVVLTEEGAA 76

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + ++H L     +  +    P G +R++     G+  L   L  F   YP +++ 
Sbjct: 77  LRDRVAPLWHALTQALEKPTDE---PQGLVRVSVIPGFGRYRLMPELPAFQQRYPQVRLD 133

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D + +++  +  D AI  ++ +Q S ++ R++  + M   A+P YL     P   Q+
Sbjct: 134 LAMDPRRVNLIGERMDVAIG-QRTVQDSRIVTREIRPMRMMLAASPAYLARFGAPQQPQD 192

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +   +  P   +  +WLA  D    E + + L       ++   +   GI  L 
Sbjct: 193 LLHHRCLVHRN--PGNGKLQSWLA--DELAMEEQHAFLISTVPDVLVDAALADMGIVSLA 248

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           D+ +        L  +ME        ++  YP       +++AF +F+  K
Sbjct: 249 DWYLAPPIAAGRLAPVMETHWPAPQPLWVKYPHHR-LAPRVRAFVDFLIEK 298


>gi|163850543|ref|YP_001638586.1| carbonate dehydratase [Methylobacterium extorquens PA1]
 gi|163662148|gb|ABY29515.1| Carbonate dehydratase [Methylobacterium extorquens PA1]
          Length = 305

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 120/290 (41%), Gaps = 11/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   + +F  +  +GS + A  Q  LS  ++SR+++ LE E+G++L +R  R + LT  
Sbjct: 1   MNLLDVALFCAIVSTGSLSAAGRQAGLSPMAVSRRLAALEHELGVRLIHRTTRSVALTAD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G     +   +    E       E     SG LR+     +G+ L+   +   +   P +
Sbjct: 61  GETFLPLAQTMLEAQEAATAAFSEQHEGLSGVLRVTAPHRIGRALVVPLVVRLMAENPRL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L   +  +DI+    D AIR+   +Q+S L+  ++        AA  YL     P  
Sbjct: 121 KVDLTFSDGIVDIAAAGIDVAIRVA-TLQASELVAVQVADNPRILCAATAYLAAHGCPER 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +LD H  +T   +                PI +     L  +S  ++   CV G+G+A
Sbjct: 180 LADLDAHACLTLHAMDAWT------FRQAGHPIAKRIKGRLAASSVDTVHAACVAGAGLA 233

Query: 243 LLPDYIVKDN---PNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LL  + V+ +     L  + + D       ++   P       +++ F +
Sbjct: 234 LLTYWDVEQDLANGTLKALTLNDAEPEQLAIWAVLPTRQHMPARVRRFID 283


>gi|317407783|gb|EFV87710.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 323

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 117/294 (39%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V R+G F  A   L + +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 3   DLNDLYYFVQVVRNGGFAPAGRALDIPKSRLSRRIALLEERLGVRLIQRSTRTFAVTELG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +    E  Q  +  +  +P G +R++    L    L   +  F+   P + 
Sbjct: 63  QEYFEQCLSMLAGAEAAQEVIDRTHAEPQGTIRMSAPPALIYYFLGDMVARFMEQCPKVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   ++ +D+  +  D A+R+R   I+SS L+ + L        A+P   +       
Sbjct: 123 VYLKSFSRPVDVLREGYDLAVRVRFGQIESSDLVMKHLGVGRQCLVASPALAQRLPASAD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L +   +  G    + +   +        +  P       +  L++ Q  + G G+ 
Sbjct: 183 PQQLSQLPTLALGPEQRESVWRLD--GADGARLEVPYSPRFVTDDMLALKQAALRGVGVV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  ++ D      LV +          V+  +P        ++   +F+  +
Sbjct: 241 ALPMVMIHDELDAGRLVNVGGPWQPEPGNVHAVFPSRRGLLPAVRELLDFMAEQ 294


>gi|318605546|emb|CBY27044.1| transcriptional regulator, LysR family [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 301

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 122/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +  V   G F+ AA  L L +S +SR+++ LE  +G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYYAEVVEHGGFSAAARVLGLPKSKLSRRLALLEERLGVRLIQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  ++ +  +P G +RI   + L Q  +   L +F+   P + 
Sbjct: 63  RTYYEHCKAMLEEAKAAQEAIELTRAEPRGVVRITCPVALLQATVSAMLADFMASCPLVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D   +  D AIR+R  P+Q S L+ + L        A+P  +    E   
Sbjct: 123 LHLESTNRQVDPVAEAIDIAIRVRPPPLQDSDLVLKVLGNRCQCLVASPELIARLGEVKV 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G   P+    +N                L      ++    V G G+ 
Sbjct: 183 PADLTGWPSLGLGQ--PQQEFIWNLDGPEGAHAAVYHQPRLVTADMTTLRSAAVSGVGVV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V +     +L+R++ +       ++  +P        +++  +++ L+
Sbjct: 241 QLPVMMVTEQLAAGDLIRLLPEWSLRHEIIHAVFPSRCGLLPSVRSVLDYLTLR 294


>gi|271498849|ref|YP_003331874.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342404|gb|ACZ75169.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 314

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 121/291 (41%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   GSFT AA QL +S S++S+ ++ LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKSMSVFASVVEFGSFTAAARQLAMSVSAVSQTVTRLEDELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     + H+      +L   +  P G LRI ++  + QN+L     + L  YP + +
Sbjct: 64  IYYHGCRRMLHEAHEVHEQLYAFNNTPIGTLRIGSSSTMAQNVLATMTTDMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL   +L ++ M   AA  YL     P    
Sbjct: 124 NLVCGIPAPDLIADGLDIVIRVGA-LQDSSLYSTRLGSMPMVVCAAKSYLAQHTTPEKPG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N  ++++++   G+GIA +
Sbjct: 183 DVSNASWLEYSVRPDS---EFELIAPEGITTRLTPQGRFVTNDPVTLIRWLKNGAGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P   V +      +  +     +    VY  Y        K++   N++  
Sbjct: 240 PLMWVFEEIKRGEIEILFSRYHSDPRPVYALYTRRDNLPLKVQVCINYLTE 290


>gi|302185014|ref|ZP_07261687.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 301

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 129/303 (42%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  +A   SF   A    LS ++++R I+ LE+ +GI L  R  R + LTE
Sbjct: 1   MDRIQEMTLFAGLAEQTSFAGVARHFGLSTATVTRAIASLESRLGILLVVRTTRNMRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L+  +         P G L +      G   +   +  FL  +P 
Sbjct: 61  AGQRFAADCRRLLADLDEAESAAGGLHALPGGLLTVTAPQMFGALHVVPVMTSFLERFPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+ IL ++ + +  +  D A+R+   +  SSL      ++     A+P YL+    P 
Sbjct: 121 VDIRAILVDRVVSMLDEGVDVAVRIG-TLPDSSLTAIPTGSVRRMVCASPAYLEQHGAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L +H+ ++            +WL  + D+       S L + SY + +   + G G
Sbjct: 180 HPDDLRQHSTVS----TTTAERSPHWLFRIDDKNYSVDVASRLSLTSYQAAISAALQGWG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR-D 296
           +  +P Y ++++     L  +++        V+  Y E  + + K++AF +F     R D
Sbjct: 236 LTQVPHYQIREHLQEGRLKCVLDTFEIMPEPVHVVYLEGRRRSSKVRAFVDFCVSALRHD 295

Query: 297 WKF 299
            +F
Sbjct: 296 LQF 298


>gi|317048005|ref|YP_004115653.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949622|gb|ADU69097.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 301

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 123/290 (42%), Gaps = 9/290 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  +   GS + AA  L +S+  +SR +  +E   G +L +R +R LT+T  G K+   
Sbjct: 9   VFNRICELGSLSAAARALDISRPMVSRYLDEMEKWAGARLLHRSSRRLTITPAGEKILEK 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +  +       +I  QE+  +  G LR+A       ++L   +  FL  YP ++I+L ++
Sbjct: 69  SRALARL--AGEIADQEAQSEVQGILRVACAHSTATHILGPMIPAFLARYPALRIELEIN 126

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ + +  +  D A+R+    ++ + I R+L        A+P YL+    P +  +L +H
Sbjct: 127 NQPVSLVGERIDLAVRITNDPEAGA-IARRLGECVSVVCASPAYLQQHGTPHTPPDLVQH 185

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + +        + + +       I               +    + G G+A++P+   
Sbjct: 186 NCLHYSRF---AGQRWEFHDRKGEVISTTISGNFSAGISSVLCDAAIAGCGVAMVPEMEA 242

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +    +  L  +M +    +  +Y  Y    +    L+ F   +  +  D
Sbjct: 243 RAALHSGQLHAVMPEFTPKTLGIYGLYMSRDRQPAALRLFLAAVQQRLAD 292


>gi|188583728|ref|YP_001927173.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347226|gb|ACB82638.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 303

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 123/289 (42%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  VA  GSF+ A   L LSQ+ +++ ++ LE  +G +L +R  R LTLTE G    
Sbjct: 8   MQVFVRVAALGSFSAAGRALGLSQTGVTKHVAALEARLGTRLLHRTTRRLTLTEAGRTYL 67

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +  +   +V+  G LR+   +  G   +   L +F   +P + I+L 
Sbjct: 68  EACERILAEIAEAEAAVGAEAVEAHGTLRLNVPLSFGVREIAPALSDFSTAHPALTIELG 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++ +D+  +  D A+R+   +  S LI R+L    +    AP Y +    P   +EL 
Sbjct: 128 LNDRRVDLIEEGWDLAVRIGA-LADSGLIARRLAACRLVTCGAPRYFERHGTPHRPEELK 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +                       P    L+  +  ++    V G G+   P +
Sbjct: 187 HHNCLGYTLSDASGWR--------FGEQAYPVSGNLRAPNGAALTAAAVAGLGLIYQPTF 238

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +V        LV +      P   ++   P   +   K +AF +F+  +
Sbjct: 239 LVAQALRAGTLVALDLGAPCPVLPIHALMPPGRR-PAKTRAFVDFLAQR 286


>gi|70730747|ref|YP_260488.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345046|gb|AAY92652.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 299

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F   A +GS + AA  L L+ ++ S  +  LET +G +L  R  R + LTE+G + 
Sbjct: 6   DLEIFVRTADAGSISAAARSLGLTAAAASIALKRLETRLGSRLLARSTRSMRLTEEGRRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     LE  ++ L++ S+  +G L+++   D G+N L   L EF   +P +++QL
Sbjct: 66  LESVRLALATLEDGELALKQQSLGLAGVLQLSAPSDFGRNALLPWLDEFKAEHPQLRLQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQE 185
            LD++  D+  D  D A+R   P + SSL+   ++      A A+P YL  C  P + + 
Sbjct: 126 RLDDRHADLFRDAVDVALRFGVP-EDSSLVALPILPGHRRIACASPAYLARCGVPQNPEA 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  H+ + +   +        W  +      E  +      +      ++ + G GI   
Sbjct: 185 LAGHSALLY---LRNGQPYDRWRFSRGSETREVLVRGDYLCDDGEVARRWALAGHGIVYK 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
               V ++     LV ++ D            P  L+ + +++   +F+  + R
Sbjct: 242 ARLDVAEDIRAGRLVPLLGDWQGEPAPFNLLCPHRLQVSQRVRLLHSFVLQRCR 295


>gi|260776407|ref|ZP_05885302.1| putative transcriptional regulator LysR family [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607630|gb|EEX33895.1| putative transcriptional regulator LysR family [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 266

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 129/267 (48%), Gaps = 9/267 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +  ++I+R+I  LE  + ++L  RHAR L+LTE G + +   S + ++L +   E+ +  
Sbjct: 2   IPVATITRRIQALEEALNLRLLNRHARKLSLTEAGERFYNECSPLLNRLTSAAEEITDEC 61

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
              +GK+RI+   +L +  +   L EF+  YPDI I+L   N    +     D   R+  
Sbjct: 62  RGAAGKIRISAPSNLTKRRMMPMLNEFMKHYPDINIELTTSNHADQLDPTEWDVIFRVG- 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P + SSLI RK+ ++     A+P YLKN   P   ++L  H+L+    L+   + + N  
Sbjct: 121 PQRDSSLIARKISSVEDILVASPEYLKNNPTPKHAEDLHNHSLLKGAPLLKWQLTNSNGE 180

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITP 265
             V+   G       Q ++   +   C  G GI L+PD ++K   ++ +L R++ED    
Sbjct: 181 TVVNNDKG-----RFQASTLDVVRSACSNGLGITLMPDAMLKKYIEDGSLTRVLEDWSAN 235

Query: 266 SFTVYFCYPEALKNTGKLKAFRNFIFL 292
              +Y  Y        K++   +F+  
Sbjct: 236 PRDIYMLYNHKDHLPEKVRLLIDFVIA 262


>gi|167578985|ref|ZP_02371859.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 313

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 132/293 (45%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +     V  SGSF+ AA +L  ++S +S ++  LE  +G  L  R    L LTE G 
Sbjct: 4   FSDMSTLVAVVESGSFSEAARRLGTTKSIVSHRVQQLEKRLGCALLTRGRP-LQLTEPGR 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  +  +LE  + E+QE+     G LR+        + L   L  F   Y  + +
Sbjct: 63  NFFERSRILLQELERMEDEVQEAGASLHGTLRLTVPATFVTHRLAPLLARFAAKYQALCV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +++  ++   + D AIR+ + +  S+L+ R L   H    A+P YL     P    
Sbjct: 123 EVEAEDRLSNLQDGHFDIAIRIGR-LADSNLVARTLCANHHLICASPAYLARRGVPAHPA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL  H+ + + +  P  M    W   +D      R+   ++ +S   ++   + G G+A+
Sbjct: 182 ELLHHDGLIYLNREPNGM----WNLPLDGAQQSFRVRTQMRSDSGHQLLAGALAGLGLAI 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP ++  D     +LV ++ D I P   +   Y + ++ + K++A   F+  +
Sbjct: 238 LPTFLAADALLAGDLVPVLTDHIPPGGQISALYRKTIRTSPKIQALIEFLVDE 290


>gi|262401763|ref|ZP_06078329.1| LysR family transcriptional regulatory protein [Vibrio sp. RC586]
 gi|262352180|gb|EEZ01310.1| LysR family transcriptional regulatory protein [Vibrio sp. RC586]
          Length = 322

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               + L +F  VA   SFT AA  L L QS++SR+I  +E  + ++LF R +R + LTE
Sbjct: 22  PMKIEDLHLFVQVANQLSFTGAANILDLPQSTVSRKIKQMEETLEVRLFERTSREIFLTE 81

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +  +  +  + E  +  L++ S +PSG++ +       + L+   L  F+  +P+
Sbjct: 82  PGRQFYEHSRTIIQEFEDAKSFLRDYSTQPSGEITLYCMPYFTRLLVADFLPIFIKTFPE 141

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I        +   +   D  I    P +  +++ R+L ++    YA+P YL     P 
Sbjct: 142 IRITSRSFEPALMEQIQEGDL-IFYLFPPRDPNMVSRRLFSVSRRFYASPEYLLKHGHPS 200

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  HN + F + +   +E++ +L   +     P       ++  + M+  + G+GI
Sbjct: 201 HPCELKNHNCLRFDNRVSP-VEEWTYLEEREVK-SVPIQGSFTCDAVDATMELALKGAGI 258

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +P  +         LV + +   +     Y  Y        K+K F + +  
Sbjct: 259 CWIPQPMANRAVREGKLVCLFDGKYSFDQPYYVVYHSKNYVPRKVKVFLDMLIQ 312


>gi|254489886|ref|ZP_05103081.1| LysR substrate binding domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224464971|gb|EEF81225.1| LysR substrate binding domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 295

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 130/295 (44%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  V  SG F+ AA  L    + +SR +S LE  +   L  R  R + LTE+G  
Sbjct: 8   EDLETFIAVVDSGGFSSAALLLDQQVAKVSRAVSRLEAALNCTLLNRTTRRIELTEEGHL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E    LE  +  L+    KPSG+LR+        + L   + EF  LYPDI + 
Sbjct: 68  FIAYAREGLTALEKGEDMLRLMHGKPSGRLRVDAASPFVLHQLTPLISEFTTLYPDIHLD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   +  ID+     D AIRL  P + S++  R L    +   A+P YL   REP +  +
Sbjct: 128 ITSHDSIIDLLEHKTDVAIRLGDP-KDSNINSRLLGRSKLRLVASPDYLAKQREPHTESD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H LI F D     + D+  +  V           +  +S  ++ Q C+ G G+ALL 
Sbjct: 187 LMSHRLIAFTDA--PSLNDWPLINKVMLTF------AIGASSGETVRQLCLAGQGVALLS 238

Query: 246 DYIVKDN---PNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +++++ +     LV ++   I       +V   + +    + ++ A  +FI  + 
Sbjct: 239 NFMIRQDLNQGKLVEVLPGSIASPNRRESVQAVFYKNSAVSSRITALLDFIKPRL 293


>gi|209515518|ref|ZP_03264383.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503985|gb|EEA03976.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 326

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 127/314 (40%), Gaps = 26/314 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L+ F    R GSF  AA +L ++  ++S+ I+ LE E+G++LF R  R L+LT +G
Sbjct: 3   EIRNLQPFVEAVRCGSFIAAASRLQVTPPAVSKSIAALERELGVRLFNRTTRKLSLTSEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +  + +  +L+    +++ S   P G ++++ T   G++ L   L  FL  YP ++
Sbjct: 63  RQFFQRVAPLLSQLDEAVADVRRSPEHPEGLIKVSVTPTFGRHCLSPVLAAFLQRYPLVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +  D     +  D  D +I+  +  + ++ + R L    +   A+  YL+    P S 
Sbjct: 123 IDISYDEIAPSLVNDGIDVSIQHARG-RGTNHVSRPLCDYPIVLVASRDYLERKGVPQSP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP---------IGEPRISCLQVNSYLSIMQY 234
            EL +H  +               +    R          I  PR          + +  
Sbjct: 182 DELAEHEFVGIRMPFGLAALHLERVPGNTRKGAARREKTFIHHPRGRLTVAGQPDTNLIA 241

Query: 235 CVLGSGIA------LLPDYIVKDNPNLVRIMEDVITPSFT-------VYFCYPEALKNTG 281
            + G+GI       +LP      +  L  ++ D              +Y  YP       
Sbjct: 242 AISGAGITPSSVPVVLPHL---HSGALKVVLPDYRVRGDEAEGVGPRIYVHYPHRQYLPA 298

Query: 282 KLKAFRNFIFLKAR 295
           K++ F +++    R
Sbjct: 299 KVRVFVDYLLECFR 312


>gi|77459139|ref|YP_348645.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383142|gb|ABA74655.1| LysR family transcription regulatory protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 299

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 132/292 (45%), Gaps = 9/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F   A SGS + AA  L L+ ++ S  +  LET +GI+LF R  R + LTE+G + 
Sbjct: 6   DLEIFVRTADSGSISAAARALELTPAAASIALKRLETRLGIRLFARSTRSMRLTEEGRRY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     L   +  L++ +   SG L++A   D G+N+L   L +F   +P IQ+QL
Sbjct: 66  LESVRLALATLAEGEQALKQQTEGLSGVLQLAAPSDFGRNVLLPWLDDFKREHPHIQLQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPLSIQE 185
           +L+++  D+  +  D A+R   P   S+L+   ++  H   A A+P Y++    P +  E
Sbjct: 126 LLNDRHADLFRETVDVALRFGVP-SDSTLVALPILPEHRRVACASPAYIERHGTPQNPAE 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L +H  + +   +        W    +    E  +      +      ++ + G GIA  
Sbjct: 185 LSEHGALLY---LRNGRPYNTWRFHREDETVEVEVRGDYLSDDGEVARRWALAGHGIAYK 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               V ++     L+ + +D +  S       P  ++ + ++K  + F+  +
Sbjct: 242 AWLDVAEDVRAGRLLTLFDDWLGESVPFNLLCPHRVQVSERVKVLQAFLRER 293


>gi|291481469|ref|YP_003518295.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356503|gb|ABF10591.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 302

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 126/299 (42%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +L +F   A +GS +  A  L L+ ++ S  +  LE E+G++LF R  R + LT
Sbjct: 1   MRL-LQELDIFVRTADNGSLSATARALDLTPAATSAALKRLEGELGVQLFVRSTRTMRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +           L+    +L   +    G +R++   D G+NLL   L  F   +P
Sbjct: 60  REGEQYLAQCRPALEVLQQASRDLLTGNQAFQGVVRLSAPSDFGRNLLLPWLDAFQDRHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCRE 179
            ++ +L L ++  +I  D  D A R  +P   S+L+   + T IH    A+P YL +   
Sbjct: 120 LVEFRLQLTDRMANIYSDPVDVAFRYGEP-PDSNLVAVPVATGIHRVLCASPGYLASHDM 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P +  +L  H  + +  +    + D    A  D      R+      N   ++ ++ + G
Sbjct: 179 PQTPYDLSAHRCLCY--MFGDDVHDRWRFAREDGETLTVRVKPANVSNDGDAVRRWALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIA    + V D+     L  +       +  +Y       + T  L+  R+F+  + 
Sbjct: 237 KGIAYKAWFDVADDLAAGRLRALCTAWTAEASPLYMVVAGRSQLTPLLRGLRDFVAERV 295


>gi|317404051|gb|EFV84508.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 315

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 126/285 (44%), Gaps = 8/285 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  +  +GS + AA QL  +Q ++SR++  LE  +G++L  R    + LTE G + +
Sbjct: 18  IETFVRIVEAGSLSAAALQLGGTQPTVSRRLQLLERTLGVRLLQRSTHAIRLTEDGQRCY 77

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    ++ + +++ +  + +G LR+      GQN     L ++L  YP ++++ +
Sbjct: 78  ERARELLATWQSFENDVRGAGEELAGTLRVVAPHAFGQNQFVEPLAQYLRQYPRMRVEWL 137

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D   +  DCAI++   +Q  S++  KL  +     AAP  L     P    EL 
Sbjct: 138 LHDRVPDFIAENIDCAIKVGA-VQDPSVVALKLGEVPRSVMAAPSLLDGGPVPEHPSELA 196

Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +   +         +   +     V R   +PR   L  +   ++ +  +LG G+ +   
Sbjct: 197 RLPWLALRTFYRDEVSLTHVETGEVSRFEIQPR---LSTDGLYALRRAALLGLGVGIASA 253

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + ++D   +  LV++          VY  Y  +     +L+ F  
Sbjct: 254 WALRDELASGRLVQLAPAWRAAPLPVYLIYAPSRLQPARLRRFIE 298


>gi|313106021|ref|ZP_07792280.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310878782|gb|EFQ37376.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 304

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 135/298 (45%), Gaps = 13/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D L  F V+   GSFT AAE++  S+  +S++I  LE ++G+ L +R  R L+LT  G
Sbjct: 3   DLDDLAAFAVLHDLGSFTRAAERVGCSKGQLSKRIGVLEQKLGVTLLHRTTRRLSLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +  + E  +  +     +  G++R+   + LG+ L    L++F   +P ++
Sbjct: 63  AALLPEAQALLVQAERARQAVARLQERAEGRVRVTLPVSLGETLFDALLEDFQERHPLLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N   D+  +  D AIR     Q + L+ R L  +     A+P YL    EP   
Sbjct: 123 VELDLYNGLRDLVGEGFDLAIRSGVE-QDARLVARPLFVLQEITCASPAYLARHGEPQRP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL +   +    L         WL      +   R+S  L  N Y  + +  + G+GIA
Sbjct: 182 AELAERECL----LNSHYSGHEEWLYHRRHRLERVRVSGFLASNHYSLLKKAALAGTGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LP Y+V D   +  L  ++ D  T S  ++  +P       + +   +++     DW
Sbjct: 238 RLPSYMVHDELGDGRLAWLLRDYQTRSTPMFLVHPFQGGLPRRTQVLADYLL----DW 291


>gi|153827766|ref|ZP_01980433.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148876611|gb|EDL74746.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 307

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 125/298 (41%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 12  MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 72  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 132 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATEEYLAQHAPIG 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   GI
Sbjct: 191 LPQDLAHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +         L  ++ D   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 245 IRLPCDLANPLLRAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 302


>gi|326424389|ref|NP_763282.2| LysR-family transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|319999779|gb|AAO08272.2| LysR-family transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 300

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + LR F  +A  GS + AA  L + ++ +SR +S LE  VG +L +R  R  +LT+
Sbjct: 1   MDRLEALRAFVAIAEQGSLSGAANVLEIERTKVSRYLSELEEWVGSRLLHRTTRKQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +   +  ++              +   SGKLRIA+   L ++ L   ++ F   +P+
Sbjct: 61  AGEQTLALAYQMLSLSNEVSAIRDRQNNTLSGKLRIASAYSLIEHFLLQAVEAFCDQWPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+L++ +    +  +  D A+R+   + +  LI R++        A P YL+    P 
Sbjct: 121 VQIELLVADSSTHLIEEGVDLAVRITNDL-APGLIARQMGVCRSALVATPAYLEQFGHPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  ++F            +L   +R         +  N    ++   + GSGI
Sbjct: 180 QPSDLPAHRCLSFSYFGKNRW----YLTRDNRRESIDIQGPITANISTIVLSATLHGSGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  P   V  +     L+ ++ D       VY  Y    + T   + F +FI  +
Sbjct: 236 SQQPYAAVAPHLAQGRLLPVLPDWQPDELGVYLVYSSRKQITPLHRQFIDFICQR 290


>gi|152969636|ref|YP_001334745.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954485|gb|ABR76515.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 311

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 123/291 (42%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R +  +  +GS + AA Q+  +Q+++SR++  LE  +G+KL  R    + LT+ G 
Sbjct: 10  IELMRTYIRIVEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKLILRTTHAMKLTDDGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +R   +V       + +L+ +  +P G LR+      GQ  L   L  FL  +P + +
Sbjct: 70  RCYRHARQVVDAWLALEDDLRIADDRPVGVLRVRAPHAFGQQQLLAPLVAFLQRHPQLSV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L++  +D   D  DCAIR+   +   + +   L  +     A+P  L       S++
Sbjct: 130 EWMLNDNTVDFLSDNIDCAIRVGAEV-DPATVSVLLAEVPRCVVASPELLAKYPPLTSLE 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     I         +   +      + +      CL  +S        + G G+A++
Sbjct: 189 ALSGLPWIAINTFYQHEVRLRH--QASGQIVSTAITPCLSTDSLYVARNTALAGLGVAMV 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             + V ++     L+ +       S  V+  YP A     +L+ F + +  
Sbjct: 247 SSWTVVEDIAAGRLIELFPQWRPASLPVHLVYPWARYYPTRLRKFLDLMRE 297


>gi|299533673|ref|ZP_07047047.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718395|gb|EFI59378.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 305

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 125/291 (42%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  + ++L  R +R   +T+ G
Sbjct: 3   DLNDLYYFVQVVDHGGFAPAGRALGMPKSKLSRRIALLEESLDVRLLQRSSRRFAVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++    +  + E+ Q  +  +   P G +R++  + L    +   L  F++ +P IQ
Sbjct: 63  QEYYQRCQAMLVEAESAQEVIDRTHEDPQGIVRLSCPLALLDYQVGDMLARFMVQHPRIQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+   N+ +D+  +  D A+R+R  P++ S L+ + L        A+P  +        
Sbjct: 123 LQVDSTNRRVDVIREGLDLALRVRFPPLEDSELVMKTLGESTQFLVASPKLVSAMGGMPQ 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +    + GD   +  E +                 +     ++++Q  + G G+ 
Sbjct: 183 LADLSQWP--SLGDGRLQRSESWQLQGPQGATAEVHYQPRMVCEDRIALLQAALHGVGVV 240

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP  ++ D+     LV +M      +  V+  +P        ++   +F+
Sbjct: 241 QLPAMMILDDLRKGCLVDVMPGWKPRAGIVHAVFPSRRGLLPSVRLLLDFL 291


>gi|157372040|ref|YP_001480029.1| DNA-binding transcriptional activator GcvA [Serratia proteamaculans
           568]
 gi|157323804|gb|ABV42901.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 305

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 128/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFTSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +    + L   +L   ++    +P  L          
Sbjct: 126 RIQAVDREEDKLADDVDVAIFYGRG-NWTGLRAERLYAEYLLPVCSPSLLTGEHALKMTS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +WLA   R +G   I+  Q    +    ++Q  V G GI
Sbjct: 185 DLAYHTLLH-------DTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    +V+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQTEIEAGRLVCPFNEVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|91790638|ref|YP_551590.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699863|gb|ABE46692.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 307

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 127/299 (42%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D   LR F  +  SG+   AA ++ ++ S++S+++  LE  +G++L  R  R  +LT
Sbjct: 1   MSSDTTDLRFFVTLTESGALAEAARRMDVTASAVSQRLRQLENRLGVQLVQRSTRRFSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +     +  +L+     L+  S + +G L +   +  G+  L G L +F   +P
Sbjct: 61  DEGELFYTKALTLLAELDALIDSLRARSGEVAGTLHVRGPLGFGRQHLAGALADFHSQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L L +       D  D  + +   + +SS++   +        A+P YL     P
Sbjct: 121 KLVVALTLSDVPPAADADRFDLIVHIGD-LANSSMVAYPIAPNTRILCASPDYLARHAPP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
              ++L  H  +   +          W     R     RI+  +  N      Q+ + G 
Sbjct: 180 QRPEDLTGHQCLVLRENEEDVSL---WRFRKGRTDAAVRIAPAMSSNDGDVTRQWALAGK 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI +  ++ V ++     LVR+++    P   +    P+    + ++K F  F+  + +
Sbjct: 237 GIIMRSEWDVAEHLAAGRLVRLLDGWRLPDADIVALIPQRHGVSARVKLFLAFLQARFQ 295


>gi|271499482|ref|YP_003332507.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343037|gb|ACZ75802.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 308

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 128/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++  L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSALNEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNTEYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ +   D  D AI   +      L   KL   ++    AP  L       +  
Sbjct: 126 RIQAVDREEERLSDDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCAPQLLAGEHPLKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +WLA   R +G  +I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAWHTLLH-------DASRRDWLAYT-RQLGIAQINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALANNVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|238793677|ref|ZP_04637299.1| Transcriptional regulatory protein [Yersinia intermedia ATCC 29909]
 gi|238726918|gb|EEQ18450.1| Transcriptional regulatory protein [Yersinia intermedia ATCC 29909]
          Length = 297

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F +VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  T  G
Sbjct: 5   NFNDLISFLMVARERSFTKAAAKLGVSQSALSHSIRGLEERLELRLLTRTTRSVAPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E+    L E   +P+G +RI        + L   LK FL  YPDI 
Sbjct: 65  ERLANSLGPRFAEIESELDALSEMRERPAGNIRITAGEHAVDSTLLPVLKSFLADYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  IRL + +    +  R    + M    +P YL     P++ 
Sbjct: 125 VEITVDNTLTDIVSGRFDAGIRLGEQVAKDMIAVRIGQDMSMAVVGSPSYLAKYGIPVTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I     +P     + W    +      R+   L  NS    +   ++G G+A
Sbjct: 185 ADLQNHRCINM--RLPTMGGLYAWEFEKEGYELRVRVDGQLTFNSLRQRIDAAIMGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  VK    + +LVR++++   P    Y  YP   ++T     F + +
Sbjct: 243 FVPEDAVKAEIASGSLVRVLKEWCEPFPGYYLYYPSRRQHTTAFSLFVDAL 293


>gi|146284460|ref|YP_001174613.1| transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145572665|gb|ABP81771.1| probable transcriptional regulator [Pseudomonas stutzeri A1501]
          Length = 305

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D++  F  V  SGS + AAEQL  + S +SR +S LE ++ + L  R  R L LT
Sbjct: 6   MKTNLDEMLAFVSVVDSGSISAAAEQLEQTASGVSRALSRLEDKLAVTLLRRTTRRLELT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E  + ++      P+G+LR+ T      +++   + +F   YP
Sbjct: 66  EEGEAFLAQARRILASVEEAEEQMALRRQAPAGRLRVNTASPFMLHVIVPLIGDFRARYP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D++ +D+     D AIR+  P+  SSL  R L        A+P YL     P
Sbjct: 126 LIELELHSDDRIVDLLERRIDLAIRIG-PLPDSSLHARPLCHTTRRVLASPAYLARHGTP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H+LI F +  P  + D+     +           L+ +S  ++ +  + G G
Sbjct: 185 QKVEDLAEHSLIGFTE--PDRLNDWPLRHALGESWRI--NPALRASSGDTVRELALAGEG 240

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++    +    LV ++          +   Y        ++  F +++  + 
Sbjct: 241 IASLSDFMTGRDRQRGELVEVLAAQRVDVRQPINAVYYRNTALASRITCFLDYLSERL 298


>gi|229525511|ref|ZP_04414916.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae bv. albensis VL426]
 gi|229339092|gb|EEO04109.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae bv. albensis VL426]
          Length = 306

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 122/294 (41%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L     +L E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFSSLAEATDKLLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +    + 
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-SWPGLRADKLYQEFLIPLCSPALLLGNKPMEKLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+   A  +             +    ++Q    G G+AL 
Sbjct: 185 DLAYHTLLH-----DTSRKDWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 240 NNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 293


>gi|213970942|ref|ZP_03399064.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301386214|ref|ZP_07234632.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060059|ref|ZP_07251600.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134441|ref|ZP_07260431.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213924318|gb|EEB57891.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 302

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 128/298 (42%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  +A   SFT  A  + LS ++++R ++ LE+ +GI L  R  R + LTE
Sbjct: 1   MDRIQEMTLFAALAGQTSFTGVARHVGLSTATVTRAVASLESRLGILLVVRTTRNMRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L   +         P+G L +      G   +   L  FL  YP 
Sbjct: 61  AGQRFAEDCRRLLADLAEAENAAAGVHALPAGTLTVTAPQMFGALHVTPVLTRFLSEYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+ IL ++ + +  +  D A+R+   ++ SSL   ++ ++     A+P YL     P 
Sbjct: 121 VDIRAILVDRVVSMLDEGVDVAVRIGA-LRDSSLTAIRVGSVRRMVCASPVYLAQHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I+           F      D+       S L + S+ + +   +   G+
Sbjct: 180 HPDDLQQHATISTSAPERPPHWAFR---VDDQDYSVNVASRLSLTSFQASINAALQHWGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +P Y ++++     LV ++ED       V+  Y E  + + ++++F +F     R+
Sbjct: 237 TQVPHYQIREHLQNGRLVCVLEDFEIAPEPVHVVYSEGRRGSSRVRSFVDFCVSALRE 294


>gi|89902769|ref|YP_525240.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347506|gb|ABD71709.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 299

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 131/296 (44%), Gaps = 9/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L  F  +  +GS + AA +    +S +SRQ++ LE ++G +L  R  R LTLTE 
Sbjct: 2   LNPQLLTTFSAIVNAGSISAAATRQGCGKSVLSRQLARLEADLGARLILRTTRKLTLTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +     ++   L        +   +  G LR+A    LGQ  L   + EF  L+P +
Sbjct: 62  GKVVLLQAQQIDRALSNVAQISGQFQQEVRGPLRVACPRPLGQRHLVPLITEFTQLHPLV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+++++  D+  +  D AIR+   +  S+L+ RKL        AAP YL     P  
Sbjct: 122 ELTLLVEDRMSDLIAEQIDVAIRVAH-LDDSTLVARKLADNPRVLVAAPAYLARAGVPAV 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            Q+L +H  + +        E   W   +D      R+   +++N  ++++     G+G+
Sbjct: 181 PQDLAQHECLLWTRDNRVFDE---WTFMLDDTTTLVRVQGRIRINDGMALVATACAGAGV 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLK 293
            +L   +V+    +  LV ++     PS   +Y  YP           F  F+  +
Sbjct: 238 TVLDRLLVEQELASGALVELLPAYRLPSGPSLYAVYPARQWLALNTATFVEFLLSR 293


>gi|298293997|ref|YP_003695936.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296930508|gb|ADH91317.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 307

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 130/289 (44%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D + VF  VA +GS + AA +L +++S  S ++  LE  +G  L +R  R L+LTE 
Sbjct: 1   MKLDGIAVFVAVAEAGSISEAARRLRIAKSVASDRLVELERSLGATLVHRSTRKLSLTED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       S    +L+    +L E     +G LR++  +   +  L   L  FL  +P I
Sbjct: 61  GVAFLERASAALRELDAAAADLAERRGTLAGPLRLSAPVSFTRLHLGPALYPFLRAHPSI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L LD++ ID   +  D  IR   P+  S L+  +L        AAP YL     P S
Sbjct: 121 ELTLDLDDRRIDAQAEGYDGVIRHG-PMHDSRLVAWRLARSRRLLVAAPDYLARHGSPDS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L+ H  I +     + + D+ ++    R +       L+VN+   +    V G GIA
Sbjct: 180 LAALNGHRGIFY---THRGIADWRFVM-PGRTVQVRAQVGLRVNNGEVMRDAAVAGLGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LLP ++        +L  +    +T    +Y  +PE  + + KL+   +
Sbjct: 236 LLPMFLAGAAIRAGSLQVVEVGAVTEEEFIYIAHPEGRRPSAKLRTLAD 284


>gi|209550507|ref|YP_002282424.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536263|gb|ACI56198.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 296

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 128/290 (44%), Gaps = 5/290 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   ++T AA +L +SQS++S  +  LE ++G++L  R  R +  TE G +L
Sbjct: 8   DLTAFVVVAEERNYTRAANKLGISQSALSGIVRRLEEKLGVRLLARTTRSVAPTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +   ++    +L E   KP+G +RI T     + +L+  + + L  YPDI I++
Sbjct: 68  VQTLRPMLQDIDQVVADLSEFRDKPAGTIRITTVEHAARTILRPAVTKLLKDYPDIVIEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I+D   +D+  D  D  +RL   +    +  R    + M    +P Y +    P + ++L
Sbjct: 128 IIDYGLVDLVTDRFDAGVRLGVQVAKDMIAVRISDDVPMAIVGSPAYFEQHAPPATPEDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I         +  + +L    R +       L  N+   I+   + G G+A +P 
Sbjct: 188 VEHRAINLRLPTSGVLNAWRFLQD-GREVRVRVDGPLVFNTIDLILDAALDGCGLAYMPL 246

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             V+ +     LV ++     P    +  YP    ++   K F   +  +
Sbjct: 247 DQVEKHVAEGRLVAVLRSWTPPLPAYHLYYP-NRASSPAFKLFVEAVRHR 295


>gi|320158058|ref|YP_004190436.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
 gi|319933370|gb|ADV88233.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
          Length = 300

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 16/300 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++ F  VA   SFT  AE L LS+  ++R +  +E+ +  +L +R  R ++LT 
Sbjct: 1   MDRLDAIKSFIEVANCRSFTQVAETLSLSRLQVTRHVQEVESWLQQRLLHRTTRKVSLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  +    +++  +S    +G +RI+  I   Q+ L   +  F  L+P 
Sbjct: 61  AGEQAYIRCQRILDEAAALELDAVQSRDSLTGSIRISAPIGFSQHHLIDAVSAFTELHPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + ++  ++   +  +  D A+R        +LI RKL+ I     A   YL      +
Sbjct: 121 VMVDILASDRFSQLVDERVDVALRYTDQ-PDETLIARKLMDIDAVVCATQGYLDEHEPIV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             ++L  HN +         +    W    D  I E  +   ++ N   +++   + G G
Sbjct: 180 VPEDLANHNCLVH-------LSTHLWRFVADNQISEVSVKGNIRANDLSTLLGAALAGKG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  LP  +         LV ++     PS +++  Y      T  ++ F +FI   A+ W
Sbjct: 233 VIRLPCDLANPLLQQGKLVALLTPYTLPSSSLWAVYLSRSYQTPVVRQFIDFI---AQRW 289


>gi|153010770|ref|YP_001371984.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562658|gb|ABS16155.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 298

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 130/294 (44%), Gaps = 11/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D +RVF  V    SFT AAE L + +S+++  I  LE  +G +LF R  R +  T 
Sbjct: 1   MDRFDAMRVFTRVLERRSFTLAAEDLGIPRSTVTDAIKQLERRLGTQLFLRTTRHVNPTL 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   E+   +E  +     +   P G LR+     L ++ L   L  FL  YPD
Sbjct: 61  DGQAYYQRCIEIIASIEDAEGGFSGA--MPRGLLRVEVQGTLARHFLLPELPAFLEKYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   ++ +D   +  DC +R+   +Q S +I R++  +     A+P YL    EP 
Sbjct: 119 IELYMTEGDRFVDPVREGIDCVLRVGL-LQDSDMIARRVAMLDEVTVASPSYLARFGEPQ 177

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
              +L D H +I F       +        VD  +    I   + VN+  S      LG 
Sbjct: 178 HPDQLTDGHQMIGF--RASGSIARMPLEFMVDGKLRTVTIPAPVSVNAAESYTAAASLGL 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI  +P Y    +     LV+I+      S  V   YP   + + +++ F ++I
Sbjct: 236 GIIQIPRYHAMKHIAGGKLVQILGAYPPSSSPVSVVYPRDRQLSPRVRVFIDWI 289


>gi|150396063|ref|YP_001326530.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027578|gb|ABR59695.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 297

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 118/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VA   SFT AA +L  SQSS+S  +  LE  +G++L  R  R L  T  G
Sbjct: 5   ELGDLLAFLAVAEEKSFTRAAARLGTSQSSLSLILKRLEARLGVRLLTRTTRSLAPTNAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          +E   + L E   +P+G  RI         +L   L  FLL YPDI+
Sbjct: 65  EQLLATLGPALGSIEAQLLALGEFRDRPAGSFRITAGQHAIDTILWPKLAPFLLEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ ++   DI  +  D  +RL   ++   +  R      M   AAP    +   P   
Sbjct: 125 VELVAESALTDIVTERFDAGVRLGDQVEKDMIAVRIGPLARMIVVAAPSCFVDRARPQVP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H  I     +P     + W    D      R+   +  N    ++   + G G+A
Sbjct: 185 QDLTGHRCINL--RLPSYGGFYAWEFERDGHEVRVRVDGQVAFNGVPQLVNAALDGFGLA 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + + +V++   +  LV+I+ D   P    +  YP               +  +
Sbjct: 243 YVHEDVVREHLKDGRLVQILGDWTPPFPGYHLYYPSRRHPAPAFTLLVEALRHQ 296


>gi|237654299|ref|YP_002890613.1| LysR family transcriptional regulator [Thauera sp. MZ1T]
 gi|237625546|gb|ACR02236.1| transcriptional regulator, LysR family [Thauera sp. MZ1T]
          Length = 309

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 131/294 (44%), Gaps = 12/294 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
             F  V   GS   AA  L  +++ +S+Q++ LE  +G  LF R  R L LT  G    R
Sbjct: 8   ESFVRVVEGGSMAAAARTLGCTRAQVSKQVAELERRLGAALFERSTRRLVLTPAGEVFLR 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +     +++++I ++    +PSG LR++ T+  G++ +   L       P ++I+L+L
Sbjct: 68  HAARALEAVDSSEIAVRNLGERPSGTLRVSATLAFGRHFVAPLLPVVTAANPGLEIELVL 127

Query: 129 DNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++ +D+  D  D A+R+  +P + +  + R L+ +     AA  Y++    P    EL 
Sbjct: 128 TDRLVDLVDDRIDLALRMTARPPEDA--VARHLLRLRWVLCAASAYVERHGSPREPAELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I    +       +  +A    P      S ++ +S    +   + G GIA+LP Y
Sbjct: 186 QHACIGHPAI---GAAPWGLVAAAGAPARVAVRSRVRFDSLDCTLDTVLAGHGIAILPAY 242

Query: 248 IVK---DNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + +      +L  +++           +Y CY        K++ F + +  + +
Sbjct: 243 LCEPALQAGSLRTVLDGWEPAFDAGRDLYACYTPGRVGVSKVRVFMDALQQRLQ 296


>gi|319944085|ref|ZP_08018364.1| regulatory protein [Lautropia mirabilis ATCC 51599]
 gi|319742662|gb|EFV95070.1| regulatory protein [Lautropia mirabilis ATCC 51599]
          Length = 322

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 124/306 (40%), Gaps = 22/306 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L  F  +   GSF  AA +L L  S++S  +  LE ++G++L +R  R +  TE G
Sbjct: 13  DFAELAAFAAIVEEGSFRGAAARLGLRPSTVSHSLRALEEKLGVQLLHRTTRSVAPTEAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L          +E     +      P+G++R++    +   +L   L+ F+  +PDIQ
Sbjct: 73  QALFARVGPALAGMENAIEAVNAHRDLPAGRIRLSMPRCVASQVLLPRLRAFMERFPDIQ 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +  DN  +DI  D  D  IRLR+ I    +       +     A+P +L     P + 
Sbjct: 133 LDIAADNGFVDIVRDGFDAGIRLRESIPGDMVAVPVTPDLQTMVVASPDHLALHPAPRTP 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNW----LATVDRPIGEPRISCLQV-------------- 225
            EL +H  I F  +    +  + +    L T +     P  S  QV              
Sbjct: 193 HELHRHRCIGFRQIGSGNVYRWEFMRAALPTREAGDTSPGSSAAQVPGLMELNLDCALVL 252

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           +    ++     G G+A   D I +   ++  L++++ D           YP   + T  
Sbjct: 253 DDPELMLDAAARGLGLAYAMDAICRPWLEDGRLMQVLADWSPRYPGFCLYYP-NRRITAP 311

Query: 283 LKAFRN 288
           L+A   
Sbjct: 312 LRALVE 317


>gi|330889952|gb|EGH22613.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 302

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 135/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  +  SGS + AA+    S +S+ R ++ LE+ +G++L  R  R + LT+
Sbjct: 1   MDRLKAMANFVRIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +  R T  +    +  +  L        G LR+   ++ GQ  +   +  FL  + D
Sbjct: 61  EGEEYLRWTRRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLSEHQD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L+++ + +  +  D A+R+   +  S+++ R++    + + A+P YL+      
Sbjct: 121 INVELNLNDQIVPLLDERLDLALRIGH-LPDSAMVARRIGATRLVSCASPGYLRTAPLLD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L +H  IT      +      +     + + +  I  L  N   +    CV G G+
Sbjct: 180 TPKSLPEHACITLASHGRQW-----YFRHQGKELIQDIIPRLVCNQVRAASLACVQGLGV 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             L  Y V D   +  L+R++++  T    +   YP AL+ + ++KAF  +   + 
Sbjct: 235 TRLMHYQVADELADGRLIRVLDNFETADLPIQLVYPHALQLSPRVKAFVEWAMPQL 290


>gi|221211099|ref|ZP_03584078.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168460|gb|EEE00928.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 348

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 131/306 (42%), Gaps = 18/306 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      R F   AR  +F+ AA++L ++  ++S Q+  LE E+G+KLF R+ + 
Sbjct: 1   MDLRQLPALNAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEDELGVKLFTRNGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           L LT+ G +  +        L     +++ S      +L ++         +   +  F+
Sbjct: 61  LCLTDAGMRYAQQVRTALMMLADATRQVRASDRDR--RLVVSMLSSFAARFVTPRIGTFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P+I ++L   N   D + D  D AIR         L    L+        AP  L  
Sbjct: 119 ERHPEIDVELQSTNALTDFARDDVDLAIRFGFG-SYPGLYVEPLLDEAFFPACAPT-LNG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L  +NL+   D + +   D   L T    + EP+   L  +S   ++Q  +
Sbjct: 177 GKLPQTPADLVHYNLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSSN-LLQAAI 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIAL+   +      +  LVR+ +      +  +F  P  L  T +++AFR +I  +
Sbjct: 232 EGQGIALVRRSLALHDLLDGRLVRLFDIDGPSPWHYFFVCPPPLLGTPRVQAFRMWILQE 291

Query: 294 ARDWKF 299
              +K 
Sbjct: 292 VAQFKL 297


>gi|330972898|gb|EGH72964.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 301

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 130/303 (42%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  +A   SF   A    LS ++++R ++ LE+ +GI L  R  R + LTE
Sbjct: 1   MDRIQEMTLFAGLAEQTSFAGVARHFGLSTATVTRAVASLESRLGILLVVRTTRNMRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L+  +         P G L +      G   +   +  FL  +P 
Sbjct: 61  AGQRFAADCRRLLADLDEAESAAGGLHALPGGLLTVTAPQMFGALHVVPVMTSFLERFPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+ IL ++ + +  +  D A+R+   +  SSL      ++     A+P YL+    P 
Sbjct: 121 VEIRAILVDRVVSMLDEGVDVAVRIG-TLPDSSLTAIPTGSVRRMVCASPAYLEKHGAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L +H+ ++            +WL  + D+       S L + SY + +   + G G
Sbjct: 180 HPDDLRQHSTVS----TTTAERSPHWLFRIDDKHYSVDVASRLSLTSYQAAISAALQGWG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR-D 296
           +  +P Y ++++     L  +++        V+  Y E  + + K++AF +F     R D
Sbjct: 236 LTQVPYYQIREHLQEGRLKCVLDTFEIIPEPVHVVYLEGRRRSSKVRAFVDFCVSALRHD 295

Query: 297 WKF 299
            +F
Sbjct: 296 LQF 298


>gi|306844815|ref|ZP_07477400.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306274987|gb|EFM56757.1| LysR family transcriptional regulator [Brucella sp. BO1]
          Length = 293

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 135/284 (47%), Gaps = 7/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L++H LI + + +       N        I        +V+S L  ++    G+GI 
Sbjct: 180 PEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +L  +I + +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 235 ILHSFIARADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 277


>gi|152980802|ref|YP_001354168.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151280879|gb|ABR89289.1| transcriptional regulator, LysR family, glycine cleavage system
           [Janthinobacterium sp. Marseille]
          Length = 311

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 119/298 (39%), Gaps = 11/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH---ARGLTLTE 61
            + LR F   AR  SF+ AA +L+++ +++ + +  LE  +G  LF R       L  TE
Sbjct: 7   LNALRAFEASARHQSFSAAAAELNVTPAAVGQLVRSLEDWLGTPLFNRSASGRARLIATE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +          KL      L+E     +G L +  +       L   +  F   +PD
Sbjct: 67  AAQRALPEIRAGLDKLSLGLERLKE--GAINGVLTVTVSPAFAAKWLLPRIDTFQAAWPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L    K +D      D  +R       + LI  KL+   ++   +P  L+  +   
Sbjct: 125 TDVRLDTSLKPVDFVALGIDIGVRYGNG-DWAGLIAEKLLDEEIYPVCSPLLLRQKQRLR 183

Query: 182 SIQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L K  LI        K    +     V        +  +++N+  +++Q  + G G
Sbjct: 184 KPTDLGKETLIHDLSIESHKDFPSWKQWLKVAGVDHTETMRGMRINNSAAVLQAAIDGQG 243

Query: 241 IALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IAL    + +D+     LVR+  D+  T     +  Y     +  +L AFR+++ ++A
Sbjct: 244 IALARSVMARDDVAASRLVRLFPDIKFTSPLAYFIVYRAERASLPRLAAFRDWLLVEA 301


>gi|149923396|ref|ZP_01911802.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149815754|gb|EDM75279.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 324

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 139/295 (47%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D ++L +F  V  + SFT A   L L +S++SR+++ LE  +G++L  R  R ++LT+ G
Sbjct: 6   DLNQLVIFAKVVEARSFTGAGRILGLPKSTVSRKVAQLEERLGVQLLQRTTRRISLTDVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +   + +  ++   +  +   +  P G LR+    +LG   L+  + EFL+++  + 
Sbjct: 66  AAFYERCARIATEIAEAEEAVLHVNEGPRGVLRVHADPELGVG-LRAAVCEFLVVHDQVD 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSS--SLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+L       D+  +  D ++RL  P + +   L+ R++  +     A+P Y      P 
Sbjct: 125 IELEFSAGVGDLIEEGFDVSLRLEAPEEPAARGLVTRRVHGLARVLVASPDYYARHGTPQ 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L+ H ++  G+  P+              +   R   L  N   ++ +  + G GI
Sbjct: 185 APEQLEDHAIVIHGN--PRGRSSLQLCNVEGEVVVVQRRPRLVANDPATMREALLGGVGI 242

Query: 242 ALLPDY---IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L+P +    +  N  L   +++      +V+  YP A   +GK++ F +F+  +
Sbjct: 243 GLIPAFECVHLLRNGELRTCLDEWTRFDESVHVAYPTARHLSGKVQTFLDFVSER 297


>gi|326317491|ref|YP_004235163.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374327|gb|ADX46596.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 324

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 132/311 (42%), Gaps = 28/311 (9%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L      A  GSF  A   L +S S++ + ++ LE E+G++L  R  R + LTE+G
Sbjct: 6   SLSALLALVRTAELGSFVAAGRALGISASAVGKAVAKLEQELGVRLLQRSTRRIALTEEG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + H     +   L+  +  + +++  P G+LR++  I +  +LL   L EFL  +P ++
Sbjct: 66  RQFHERCRRILDDLDDARAMVSQAAAAPRGRLRVSVPI-VAYHLLLPRLPEFLERHPQVE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +  +++ +D+  +  D AIR    +  S L+   L        A+P YL     P ++
Sbjct: 125 LDIDFNDRIVDLIGEGVDIAIRSGD-LPDSRLMSLPLRHYRSLLCASPEYLARRGTPAAV 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--------------------ISCL 223
            +L  H+ I F    P   +   W          P                        L
Sbjct: 184 GDLADHDGIAF--RYPNSGQWLPWPLPETGGATVPEEPPPPLSMSSAPSPSPLPRLRRVL 241

Query: 224 QVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKN 279
             N+  ++    + G GI  +PD++V+       L +++ D    P+      +P + + 
Sbjct: 242 GFNNMEAVRGAALGGLGIGCMPDFLVEGPLREGALRQVLPDPEGRPAGRFRAVWPTSRQL 301

Query: 280 TGKLKAFRNFI 290
           + K++ F +F+
Sbjct: 302 SPKVRVFVDFL 312


>gi|197123986|ref|YP_002135937.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173835|gb|ACG74808.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 317

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 133/289 (46%), Gaps = 11/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  G F+ A   L  + S++++ ++ LE  +G +L  R  R + LT +G   
Sbjct: 11  EMEAFAAVAELGGFSAAGRALGKTPSALNKLVARLEARLGARLLTRTTRAVRLTAEGEAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H+    +  ++E  + E +     P G++R+   +  G + L   +  FL   P + + L
Sbjct: 71  HQRALRILAEVEEAEGEARG--GAPRGRVRVNANLPFGVHCLLPVVPSFLEANPGVTLDL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +D+    AD AIR+  P+++S L+ RKL    +   A+P YL     P +  +L
Sbjct: 129 VLTDEVVDLVERRADVAIRVG-PLRASGLLARKLGESPVAVVASPDYLARRGTPHTPADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I F    P+ ++D+         +  P    ++     +  +  + G+G+A L  
Sbjct: 188 GAHERIGF--TFPRTLQDWP-FRQGGEEVRVPVRGAVRAGDGETARRLALAGAGLARLAL 244

Query: 247 YIVKDN---PNLVRIMEDVIT-PSFTVYFCYP-EALKNTGKLKAFRNFI 290
           + V  +     LVR++E      +  ++  +   A     +++AF  F+
Sbjct: 245 FQVTADLEAGRLVRVLEAFEPGDALEIHALFLGPAASVPARVRAFVEFL 293


>gi|71277878|ref|YP_268135.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71143618|gb|AAZ24091.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 311

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 122/294 (41%), Gaps = 6/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L+V   VA   + T AA  + +  ++ S  I  +E  +G+ LF R  R L ++  
Sbjct: 1   MLLEDLQVILKVAEFKNITKAAASIDMRTATASAAIKRVEAALGVDLFIRTTRQLKISSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    LE  +  +++      G+LRIA + DLG+NL+   L E +  +P +
Sbjct: 61  GERYIPQCQQALLMLEQAKQNMRDDLEIVDGELRIAISSDLGRNLVAPWLDELIQNHPKV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L + + +ID   D  D AIR   P   S+L   K+  +     A P YLK+   P  
Sbjct: 121 GLKLNISDSNIDFYRDSVDVAIRYGSP-TDSNLYGFKICNVPGILCATPQYLKDNGTPQH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  HN + +   +   + D          I          N    + ++CV G GIA
Sbjct: 180 PHNLSAHNGLFY--QLHDVVHDVWKFEHKGNVIKIKMKGNRASNDGDLVRRWCVAGKGIA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     +  +    N+V +M D       ++   P     T  ++  R+ +  K
Sbjct: 238 VKSCLDMSKDLLAGNVVSVMTDYQPRKTELWLVCPSRQSITPAVRLLRDMLKEK 291


>gi|238894052|ref|YP_002918786.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546368|dbj|BAH62719.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 320

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 137/289 (47%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F  AAE+L +S + +S+++S LE  + + L +R  R +T+TE+G 
Sbjct: 14  LNDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVMLLHRTTRRVTITEEGE 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   ++    EL +    P G LRI ++   G+ ++   L    L YP +++
Sbjct: 74  RIYEWAQRILQDVDEMMDELSDVRQVPQGTLRIISSFGFGRRVVAPALSALALQYPQLEL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  + ++ +D+  +  D  IR+   I + +LI R+L   H    A+P +L     P  + 
Sbjct: 134 RFDVQDRLVDLVNEGVDLDIRVGDDI-APNLIARQLAANHRVLCASPQFLARHAPPKQLS 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L + +          L  N    + Q+C+ G GIAL 
Sbjct: 193 DLAALPCLVIKERDHPFGVW--QLHSKEGQHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 250

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V++   + +LV+++ D   P+  V+  Y   L  + K++    F+
Sbjct: 251 SWWDVRENIASGHLVQVLPDYWQPA-NVWAVYVSRLATSAKIRTTVEFL 298


>gi|187924364|ref|YP_001896006.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715558|gb|ACD16782.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 323

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 127/295 (43%), Gaps = 14/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F  AAE++ ++Q ++++Q+  LE  +G +LF R  RGL LT  GS
Sbjct: 13  LNALRAFEAAARHLNFRVAAEEIGVTQGAVAQQVRNLEDVLGHQLFDRVPRGLALTANGS 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       +      L   +      L ++TT       L   L  F   +P I++
Sbjct: 73  IYFSSVQRALTIIANATEALAHRAS----SLTVSTTPSFASKWLIPRLATFTDAHPSIEV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D +      D  D AIR  KP     L    L  + ++A  +P      R      
Sbjct: 129 RVIADQQLSTFKGDGVDIAIRHGKPPFGKGLAADPLFPVDIYAVCSPSLADARRPLKKPS 188

Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H L+    +L P+ +E  N    VD   G       + +     +   + G GIAL
Sbjct: 189 DLKRHVLLHDSHNLWPEFLEALNEGGHVDASKGP------RFSQSALAIDAAISGQGIAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             + +V+ +     L R+ +  +  S   Y  YPE  +++  ++A R+++  +AR
Sbjct: 243 TSEQLVERDLAAGRLCRLFDFALHLSLGYYVVYPEDRRDSETIRAMRDWLITQAR 297


>gi|270263906|ref|ZP_06192174.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042099|gb|EFA15195.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 286

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 124/279 (44%), Gaps = 10/279 (3%)

Query: 23  AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82
           AA++L ++ S++S+ I  LE E+GI+L  R  R L+LTE G   +     + H  E  Q 
Sbjct: 2   AAKELGITTSAVSQHIRQLENELGIQLLLRSTRSLSLTEAGQCFYEDCVLMIHAAERGQQ 61

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
            +     + +G+LR+AT+ +   + L   L+ FL  +P I ++L + ++ ID+     D 
Sbjct: 62  RIAALRGELAGELRVATSTEFATHYLVPALQSFLDEHPRITLRLEIHDEKIDLIGQRIDL 121

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202
           AIR    +  SS +  +L        A+P YL +   P S Q L +H  +TF  L     
Sbjct: 122 AIR-GGVLADSSYVSTRLARFREVLCASPAYLADHGVPESPQALTRHQWVTFTPLGNPQF 180

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK-----DNPNLVR 257
              N     +  +       L  N+ +++ +  + G GI    ++ V       + +LV 
Sbjct: 181 VRLNHANGDEHRL--RMTGRLFTNNGMAMKELALAGKGIIR--NFFVNVERELRSGDLVE 236

Query: 258 IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++ +   P    Y   P       K++     + +  ++
Sbjct: 237 VLPEWRLPEINCYAIMPRRDSQPLKVRRLLEHMKIHLKE 275


>gi|322831573|ref|YP_004211600.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166774|gb|ADW72473.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 306

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L L+E+G 
Sbjct: 8   LNSLRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLSEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSALNEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ D   D  D AI   +      L   +L   ++    +P  L          
Sbjct: 126 RIQAVDREEDKLADDVDVAIFHGRG-NWPGLRAERLYAEYLLPVCSPSLLMGDNPLKEPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +WLA   + +G  +++  Q    +    ++Q  V G GI
Sbjct: 185 DLSHHTLLH-------DASRRDWLAYT-KQLGLQQVNVQQGPIFSHSAMVVQAAVHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    +V+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQTEIEAGRLVCPFSEVLISKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|239832917|ref|ZP_04681246.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239825184|gb|EEQ96752.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 309

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 7/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT+ 
Sbjct: 17  MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTQA 76

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++   + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 77  GEEFLLAAERMEAEMLAARSQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 136

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P +   LI R+LV   +  YA   YL+    P S
Sbjct: 137 TIQLVPVPRSFSLSRREADIAITVERP-EQGRLIARRLVDYTLGLYAHRRYLEENGTPES 195

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H LI + + +       N        I        +V+S L  ++    G+GI 
Sbjct: 196 PEDLPRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSALGQVEAVRAGAGIG 250

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +L  +I + +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 251 ILHAFIARADPDLVPVLPDRVI-RRAYWLAYHESARTLRRVTAV 293


>gi|330892038|gb|EGH24699.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 266

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 120/273 (43%), Gaps = 11/273 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                + VF  +A S S + AA +L LS  +ISR+++ LE ++G++LF+R  R ++LT +
Sbjct: 1   MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLFHRTTRSVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    E  +  L+  +   SG LR+      GQ ++   L   +L  P +
Sbjct: 61  GEVFLPHAKTILEASEAARTTLKADAGSASGVLRVTAPSVFGQTVIMPLLPALMLENPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +DI+    D AIR+   I+ S+L+ R L         +P YL    +P  
Sbjct: 121 SIDLTLSDSIVDIAGLGIDVAIRIA-TIRDSALVARSLAPNPRVVCVSPDYLARHGKPAL 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++EL  H  I       + M  +        PI          NS  ++   C  G G+A
Sbjct: 180 LEELRHHPCIAL-----QAMPWWP-FTRNGEPITIRAQGPFSANSVEAVRTACKQGMGLA 233

Query: 243 LLPDYIVKD---NPNLVRI-MEDVITPSFTVYF 271
           +L  + V+      +L ++  ED +    +V  
Sbjct: 234 MLTYWDVRQEINEGSLQQVDFEDAMPEQLSVTA 266


>gi|294635102|ref|ZP_06713613.1| glycine cleavage system transcriptional activator [Edwardsiella
           tarda ATCC 23685]
 gi|291091479|gb|EFE24040.1| glycine cleavage system transcriptional activator [Edwardsiella
           tarda ATCC 23685]
          Length = 315

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 127/296 (42%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSALNEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++     D  D AI   +      L   +L   ++    +P  L          
Sbjct: 126 RIQAVDREEGKLADDVDVAIFYGRG-HWPGLRVERLYAEYLMPVCSPQLLLGEHPLKDPT 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +WLA   R +G   I+  Q    +    ++Q  V G GI
Sbjct: 185 DLAYHTLLH-------DTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+      Y    +A  + GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQTEIEAGRLVCPFNDVLISKNAFYLVCQDAQADLGKIAAFRQWILARA 292


>gi|296390569|ref|ZP_06880044.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 304

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 134/298 (44%), Gaps = 13/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D D L  F V+   GSFT AAE+L  S+  +S++I  LE ++G+ L +R  R L+LT  G
Sbjct: 3   DLDDLAAFAVLHDLGSFTRAAERLGCSKGQLSKRIGVLEQKLGVTLLHRTTRRLSLTAAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +  + E  +  +     +  G++R+   + LG+ L    L++F   +P ++
Sbjct: 63  AALLPEAQALLVQAERARQAVARLQERAEGRVRVTLPVSLGETLFDALLEDFQERHPLLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N   D+  +  D AIR     Q + L+ R L  +     A+P YL    EP   
Sbjct: 123 VELDLYNGLRDLVGEGFDLAIRSGVE-QDARLVARPLFVLQEITCASPAYLARHGEPQRP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL +   +    L         WL      +   R+S  L  N Y  + +  + G+GIA
Sbjct: 182 AELAERECL----LNSHYSGHEEWLYHRRHRLERVRVSGFLASNHYSLLKKAALAGTGIA 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            LP Y+V D   +  L  ++    T S  ++  +P       + +   +++     DW
Sbjct: 238 RLPSYMVHDELGDGRLAWLLRAYQTRSTPMFLVHPFQGGLPRRTQVLADYLL----DW 291


>gi|261251648|ref|ZP_05944222.1| transcriptional regulators LysR family [Vibrio orientalis CIP
           102891]
 gi|260938521|gb|EEX94509.1| transcriptional regulators LysR family [Vibrio orientalis CIP
           102891]
          Length = 318

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 132/288 (45%), Gaps = 8/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V + GSFT AA    +  SS+S+QI  LE+E+G++L  R  R  +LT  G +
Sbjct: 5   NQLSLFIDVVQQGSFTKAAALHDMDNSSLSKQIKKLESELGVQLLNRSTRSFSLTPAGEE 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           +      +   L   Q        +P G++RI     +G+N L+  + +F+  YPD++I+
Sbjct: 65  ILEQAHSIVGTLNHVQSIADSYHAQPKGRIRITAPYHVGRNHLRPVITQFMATYPDVEIE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+LD+K  DI  D+ D A RL + +  SSLI +K+  I     A+  +++   EP + +E
Sbjct: 125 LLLDDKRSDIISDHFDVAFRLGR-LDDSSLIAKKIANIRPVLLASHSFIERYGEPKTPEE 183

Query: 186 LDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L K   + + +  I             +           +VN    +++    G G A +
Sbjct: 184 LAKLPAVIYSNRSIMVDTMRLGETPQANVATSYKMTGNCRVNDTEVLLEAVSDGLGYAWV 243

Query: 245 PDYIVKDNPN---LVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFR 287
               +  N     L  ++ D +       +Y  YP   + T  ++ F 
Sbjct: 244 ATSNINTNIETMQLQPLLTDHLLCNHELALYALYPHRKQ-TALVREFI 290


>gi|163752174|ref|ZP_02159378.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161327951|gb|EDP99127.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 326

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 136/289 (47%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + ++  + +S     AA+QL L  ++++R++  LET +G KL +R AR  +LT +G 
Sbjct: 22  LDDIALYIHIVQSRGLATAAKQLRLPAATVTRRLQKLETSIGCKLIHRSARQFSLTAEGE 81

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   E+    E TQ  L       SGKL++    ++   LLQ     F+  YPDIQ+
Sbjct: 82  VYYQAFYELVQTFEATQRSLSADLHLLSGKLKVLAPTNISTGLLQPMWSSFIKSYPDIQL 141

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+N + DI    AD A+R+  P + S L Q+ L  I     A+  YL N   P  + 
Sbjct: 142 DLSLNNANQDILAAQADIALRIG-PQKDSQLYQKGLGFIPTVLVASHDYLNNHAAPAQLD 200

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H +I    +    +       + +     P I+   VN      Q+   G GIALL
Sbjct: 201 ELSRHRIIGVNSI---SVWTLTHRVSGNEVELTPSINTF-VNDIKMASQWACDGIGIALL 256

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V     + NLV+++ D   P   +Y  +P     + K K  R+F+
Sbjct: 257 PISEVYQDLRDGNLVQVLIDWSGPKRELYAVWPSGRLLSAKAKCLRDFM 305


>gi|162453923|ref|YP_001616290.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161164505|emb|CAN95810.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
          Length = 313

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 118/288 (40%), Gaps = 7/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ L VF  VAR  SF  AA +L ++  ++S+ I  LE  VG+ L  R  R + LTE G 
Sbjct: 8   FEGLTVFLTVARHRSFRAAAAELGVTTGAVSQAIRALERRVGLPLLSRTTRRVGLTEAGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +LH   +    ++      L E   +P+G LR+         +++  L  F   YPD+ +
Sbjct: 68  RLHERLAPAAGEISAALEALDELRGQPAGLLRLTVARTAVPFVIEPVLPRFRRAYPDVAV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +D+  +D++    D  +RL + +       R    +      AP Y      P   +
Sbjct: 128 EISVDDALVDLAETGFDAGVRLGEDLAQDMTAVRLTPDLRWLVVGAPAYFAAHGRPEEPE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I +     +    + W    D R I       L VN     +     G G+A 
Sbjct: 188 DLLAHTCIRYRF---QSAALYRWEFVRDHREITVHAPGTLTVNDADLAVSLARDGLGLAY 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + D  V ++     L   +E         +  +P   +   KL+AF +
Sbjct: 245 MFDLAVAEDLASGALATALERHAPTGPGFFLYFPARAQAQAKLRAFID 292


>gi|24374002|ref|NP_718045.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24348462|gb|AAN55489.1|AE015687_1 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 293

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 132/300 (44%), Gaps = 15/300 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L +   V  SG F+ AAE L +  + +SR +S +E++VG+ +  R  R L LT
Sbjct: 1   MKTRSDDLEILLAVVDSGGFSAAAELLDIQVARVSRAVSKVESQVGVSILNRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +          +++  + E+      P G+LR+        + L   ++ F   YP
Sbjct: 61  EEGRQFVETIRLGLLQIQQAEEEIITRGELPRGRLRVDAASPFVFHQLVPLIRPFKQTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+++L  +   +D+     D AIR+   +  S+L  R L    ++  A+P YL     P
Sbjct: 121 DIELELTSNEGFVDLLEKKTDLAIRIGN-LTDSTLHARPLGKSLLYIVASPDYLSRRGFP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H+ + F    PK + D+                 L  ++  ++ Q  + G+G
Sbjct: 180 NKSSDLIHHDSLGFS--TPKTLNDWPL------KGFTRLTPTLTSSNGETLRQLALTGNG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L  ++VK +     L+ ++E     +     +   Y ++     ++ AF +FI  K 
Sbjct: 232 IACLSGFMVKKDIAEGRLIPLLESEKISNSGREHINAVYYKSSTVAKRISAFIDFIQPKL 291


>gi|187929253|ref|YP_001899740.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187726143|gb|ACD27308.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 331

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 118/296 (39%), Gaps = 6/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR+   +A +G+ + AA QL    ++ S  +  +ETE+G +LF R  R +  TE G 
Sbjct: 4   LDDLRLLVRIADAGNLSAAARQLGWLPATASAALKRVETELGARLFERTTRSMRPTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      +    L+     L +   + SG +RIA T DLG+++L+  L  F   +P ++I
Sbjct: 64  RYLGYARQALEALDEGAESLGQDRTELSGPIRIAATSDLGRHILRPWLDAFCDEHPGVRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L ++  D+  +  D A+R    +Q S+L++R L +       AP Y K    P    
Sbjct: 124 TLVLGDRLADLMREDLDFALRYGH-LQDSALVRRPLASHPRVIVGAPSYFKKHGRPAHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +               L     P         Q +    +  + V G G+A  
Sbjct: 183 DLADHRCLILLRNGEPVTRW--QLTHASGPAPIDVRGDFQCDDGAVVRDWAVAGRGLAFK 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               V  +     L   +         +            +L A  +F+  +  ++
Sbjct: 241 SWLDVAQDVSAGRLEVALPAWSHAPTPLQLVALARRHRPARLTACADFLAARFAEF 296


>gi|107100581|ref|ZP_01364499.1| hypothetical protein PaerPA_01001606 [Pseudomonas aeruginosa PACS2]
          Length = 303

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 117/290 (40%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L VF  + R  SF H+A++L +S S++S  +  LE  +G+KL  R +R +  T+ G
Sbjct: 8   ELADLNVFMTIVRRRSFRHSAQELGVSTSALSHSMRNLEARLGVKLLNRTSRSVVPTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S L     + +  +     EL      P G+LR+    D  + LL   L+ F   YPD+Q
Sbjct: 68  SALAAKLEDGFQLIGEALGELDAYRTSPVGRLRLNVPRDASRLLLGPVLRRFTEAYPDLQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L ++++ +DI  D  D  IR    +    +       +     A+P YL     P   
Sbjct: 128 LELSVEDRMVDIVADGYDAGIRYGGTVPQDMVAVPLTGELRWVVAASPDYLARHGVPQRP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I          +    L   +R +         VN   + +   + G G+A 
Sbjct: 188 DDLLRHACIRMRLGDNSFYKWE--LGDGERMVEVDVPGPFSVNESNTAVAAALDGIGLAY 245

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +  + +   +  L  ++ D  +        YP   +    L+     I
Sbjct: 246 CLEVGIAEELRSGRLQLVLPDWTSMGAPFCLYYPSRRQPQPGLRQLMEMI 295


>gi|53722664|ref|YP_111649.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|77358738|ref|YP_338511.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|134278607|ref|ZP_01765321.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167724403|ref|ZP_02407639.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
 gi|167743364|ref|ZP_02416138.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167820547|ref|ZP_02452227.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167898973|ref|ZP_02486374.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167907306|ref|ZP_02494511.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|217422239|ref|ZP_03453742.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|254359194|ref|ZP_04975466.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52213078|emb|CAH39117.1| LysR-family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|66967536|gb|AAY59093.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|134250391|gb|EBA50471.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|148028381|gb|EDK86341.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|217394470|gb|EEC34489.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 306

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 132/302 (43%), Gaps = 13/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G
Sbjct: 3   SLDRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++
Sbjct: 63  ERFYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL +  Q   L  R +   T  +   A+P  L       
Sbjct: 123 VRLETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVAR 182

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S + L +   +    L       + D +    V RP  +P    L  ++   +  +  
Sbjct: 183 IDSPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLRAFAQ 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+ALLP+++V+D+     L+  +         VY  YP A     K++A+ +FI   
Sbjct: 240 QGGGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFIKRY 299

Query: 294 AR 295
            R
Sbjct: 300 VR 301


>gi|254559474|ref|YP_003066569.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254266752|emb|CAX22547.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens DM4]
          Length = 294

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 123/291 (42%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  VAR  SF  AA +  ++ S+IS  I  LE  VG++L  R  R + LT+ G
Sbjct: 5   ELGELAAFLAVARHRSFRKAATERGVASSAISHAIRNLEERVGVRLLQRTTRSVALTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     +  + ++E  Q  L      P G +RI     L   LL+  +   +   P ++
Sbjct: 65  ERFLADLAPAFEQIERAQEGLNTFRATPFGTVRINLPTSLAPFLLRDVIGSLVAENPGLR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++  ++ IDI  +  D  IR  + +  + +  R   T       +P YL     P   
Sbjct: 125 LDIVATDRLIDIVEEGFDAGIRFGEVLSRNMIAVRIGPTQRFAVVGSPDYLDQHPAPEHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L  H  I +     + +   NW    D    E  +   + ++    +++  V G+G+A
Sbjct: 185 RDLQHHVGIRYSFPSGRIL---NWRFKRDDEAIEVDVDGPVTLDHQELMVEAAVKGAGLA 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + +   +   +   L R +ED       ++  YP     +G L+A  + +
Sbjct: 242 YVWEDRARPYLETGTLRRCLEDWCPVRDDLFLYYPSQRHLSGGLRALIDRL 292


>gi|206562006|ref|YP_002232769.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038046|emb|CAR53992.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 327

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 117/295 (39%), Gaps = 4/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R F  V ++GSF+  A+Q  ++ + +SR ++ LE    I+L  R  R + LT
Sbjct: 1   MDM-LENMRTFVRVVQAGSFSAVAKQTDVATAQVSRAVASLEAYAQIRLLNRTTRKIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +       +   ++    E + + V+P G+LR+ T   LGQ+ +  +   +   +P
Sbjct: 60  DSGRRYFERLQSILGDVDQANAEARNALVRPYGRLRVHTMPGLGQSHVTASAVAYRARFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ I++    +  ++  +  D ++     +  S+ I     T      A+P YL     P
Sbjct: 120 DVAIEMTYSQRMPNLVEEGYDVSVVTAASLPDSACIAHSCGTSFSVLVASPAYLARHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  +          E     A           +    N+  ++      G G
Sbjct: 180 AVPADLARHTCLRLDTPAEANGEWLLHGAGGQAVSHAVAAAPFHANAPEAMSIALRAGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L  Y   D+     LVR++ D       VY  Y        K++ F + +  
Sbjct: 240 IGSLAIYSAIDDLRSGRLVRVLPDYRLTMLDVYAMYASRRFLDAKVRTFVDHLRA 294


>gi|297579908|ref|ZP_06941835.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535554|gb|EFH74388.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 307

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 125/298 (41%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 12  MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 72  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 132 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATEEYLAQHAPIE 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   G+
Sbjct: 191 LPQDLAHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGL 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +         L  ++ D   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 245 IRLPCDLANPLLQAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 302


>gi|154251721|ref|YP_001412545.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gi|154155671|gb|ABS62888.1| transcriptional regulator, LysR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 317

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 122/294 (41%), Gaps = 11/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               LR F   AR GSF+ AA +L ++ +++S QI  LE E+G  LF+R  R + LTE+G
Sbjct: 8   SLKALRAFEAAARHGSFSRAAAELSVTHAAVSHQIRALEEELGAGLFHRTGRAVELTERG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+ V +      +       ++  K +  L ++         L   L +F    P+I+
Sbjct: 68  ERLYPVLA---AAFDQIAEGWSQAGAKDTAALTVSVEPSFAARWLVLRLGKFNRANPEIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+  ++ +D S +  D  +R         ++  KL    ++   +P  L   +     
Sbjct: 125 LRLLPSSELVDFSREDVDIGVRYGLGGW-PDVVSEKLFEATVYPVCSPALLDPKKPIRKP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  + L+    +         WL           +           +Q    G G+AL
Sbjct: 184 EDLKSYPLLHEETM----EHWQQWLEAAGVKHPRWALRGPLFIEASLALQAAAGGQGVAL 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             D +   +     L+R+ +  +      +  YP+      K++AFRN+I  +A
Sbjct: 240 ANDTLAMADLAEGRLIRLFDIEMPDEEGYWLVYPKDGLKKPKVQAFRNWIREEA 293


>gi|238762596|ref|ZP_04623566.1| LysR-family transcriptional regulator [Yersinia kristensenii ATCC
           33638]
 gi|238699241|gb|EEP91988.1| LysR-family transcriptional regulator [Yersinia kristensenii ATCC
           33638]
          Length = 306

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 120/297 (40%), Gaps = 6/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + LRVF  VA  GSF   A+ L +  S++SR IS LE  + ++L  R  R + LT 
Sbjct: 4   NMDLNTLRVFTAVAEKGSFVGGAKALEMPTSNVSRCISQLEERLNLQLIERSTRHMKLTP 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  L    + EF L +P+
Sbjct: 64  AGQLLYTRVKPLLESLEQTEAELTSQQIQIKGPLRICIPNEIGPALFGTLIAEFALQHPE 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+I  + +   ++   D  D AI + R  +  S  I R L T      AAP  L    +P
Sbjct: 124 IEISCVTNLSGLESLRDDLDLAIIITRGQLDDSDYIARHLATFPCSVVAAPAVLARFGKP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++      IT    +      + ++               +VNS    ++  V G G
Sbjct: 184 TRIEQFATLPCITTVSALKGL--PWQFIKKKGGFKTVAVNGHYRVNSGEMALRAAVAGIG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            A+L     +    +  L  +  +       ++  Y        K +   + +  + 
Sbjct: 242 FAILSTQACQPWIADGRLCEVALEQPAAPLQLFAIYSNRRYLPAKTRVLIDLMQQRL 298


>gi|330810671|ref|YP_004355133.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378779|gb|AEA70129.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 304

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 134/299 (44%), Gaps = 14/299 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D    L  F  VAR  SF  AA  L  S SS++R I GLE   G+KLF R A  +TL
Sbjct: 1   MALDMLADLEAFATVARKRSFVVAARSLGRSPSSLTRAIQGLEERSGVKLFNRSANAVTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L      +         +L   S   +G +R +        ++ G + ++   Y
Sbjct: 61  TEAGERLLPHAYRMLDLQREADEDLAGLSGLATGWIRFSAPQSFAHTVIPGLIAQYSQRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD+ + +I  +  +D      D +IR   P QSS LI   L +   + YA+P YL+ C  
Sbjct: 121 PDVSVDVIFTDAAVDPVKGKLDFSIRGAFP-QSSDLIGYPLWSYSRYLYASPGYLERCGL 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P SI+ L++H LI      P+ ++++N      +          + +S  ++ Q  + G+
Sbjct: 180 PASIEALEQHALILH--TAPRILKEWN-FRGPGQAGSFRVHPKFRFSSGAAVFQAALAGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFI 290
           GIA L D++ +       L R+  +    S T     ++  YP       ++K   + I
Sbjct: 237 GIARLADWLAEPEVAAGRLARVFPEYKLTSSTGEDPRMHAVYPAG-NLPLRVKNLLDMI 294


>gi|242313760|ref|ZP_04812777.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254186299|ref|ZP_04892817.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254193850|ref|ZP_04900282.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254264379|ref|ZP_04955244.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|157933985|gb|EDO89655.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169650601|gb|EDS83294.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|242136999|gb|EES23402.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254215381|gb|EET04766.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 312

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 132/302 (43%), Gaps = 13/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G
Sbjct: 9   SLDRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++
Sbjct: 69  ERFYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALR 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL +  Q   L  R +   T  +   A+P  L       
Sbjct: 129 VRLETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVAR 188

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S + L +   +    L       + D +    V RP  +P    L  ++   +  +  
Sbjct: 189 IDSPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLRAFAQ 245

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+ALLP+++V+D+     L+  +         VY  YP A     K++A+ +FI   
Sbjct: 246 QGDGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFIKRY 305

Query: 294 AR 295
            R
Sbjct: 306 VR 307


>gi|157148623|ref|YP_001455942.1| transcriptional activator TtdR [Citrobacter koseri ATCC BAA-895]
 gi|157085828|gb|ABV15506.1| hypothetical protein CKO_04450 [Citrobacter koseri ATCC BAA-895]
          Length = 311

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 134/291 (46%), Gaps = 9/291 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L+V   +  +GSF+ AA  L  + + ++++I  LET +   L  R ARG+ LTE G +
Sbjct: 9   KDLQVLVEIVHTGSFSAAAAALGQTPAFVTKRIQILETTLATTLLNRSARGVALTESGQR 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++    +    E+ +   +P G +RI  +   G++ +   + + +  YP++Q+ 
Sbjct: 69  CYEHALKLLTHYQRLVDEVTQIKTRPEGMIRIGCSFGFGRSYIAPAITDLMRNYPELQVH 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L ++ ID+  D  D  IR+   I     I   L        A+P YL+   EP ++QE
Sbjct: 129 FELFDRQIDLVQDNIDLDIRINDEIPD-YYIAHLLTKNKRILCASPAYLQKYPEPKTLQE 187

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  H+ +   +   + M    W     +     +++  L  NS   ++Q+ + G GI L 
Sbjct: 188 LSGHDCLVTKE---RDMTHGIWELGNGQEKKSVKVTGHLSSNSGEIVLQWALEGKGIMLR 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++ V+    +  LVR++ +    S  ++  Y E L  + KL+    F+  
Sbjct: 245 SEWDVQPFLASGKLVRVLPEYAQ-SANIWAVYQEPLYRSVKLRVCVEFLAA 294


>gi|311278082|ref|YP_003940313.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308747277|gb|ADO47029.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 305

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 119/287 (41%), Gaps = 5/287 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   VA   SF  AA +L +S +++S  ++GLE+ + ++LF R  R + LT  G 
Sbjct: 6   LTELEVILAVAHRQSFRAAARELGMSATAVSNAVAGLESRLKVRLFNRSTRSVALTPAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     +    +++    E+      PSG LRI    +    L +  ++ +LL YP +++
Sbjct: 66  RYVERIAPALAEIQRASEEIMAEPDSPSGTLRINAPQESVSLLFEPLIQPYLLRYPQMRL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  +++ +DI  +  D  IRL + +    +       + M   A P Y     +P +  
Sbjct: 126 DITSESRMVDIVAEGYDAGIRLAESVPQDMIAVPLTGDLKMLIVATPEYFARHGKPQTPD 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I               L    + +       + +N   +I +  + G G+A +
Sbjct: 186 DLLTHRSIGMRMSHGGLYHWE--LERHQQKLTVNVPPRIVLNEMRAIHRAALSGVGLAFI 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            D  V+++     L  +ME        +   YP        L+AF +
Sbjct: 244 SDGFVREDLAAGRLESVMEAWCPAFGGLRLYYPGRRHVPPGLRAFID 290


>gi|118764440|emb|CAL80819.1| LysR-type regulator [[Polyangium] brachysporum]
          Length = 337

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 126/296 (42%), Gaps = 13/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  V   G+ T AAE L LS +++SR ++GLE ++G++L  R  R + LT 
Sbjct: 1   MDKLHAMHVFTKVVDLGALTKAAESLGLSSAAVSRTVAGLEAQLGVRLLQRTTRSVALTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +++     +     +P GKLR+        + L   L  F+  YPD
Sbjct: 61  AGGVYLERARRILREVDAADATVAALVAEPKGKLRVLAPSSFVVHQLARQLPVFVARYPD 120

Query: 122 IQIQLILDNKDIDISMDYA-DCAIR---LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           + I ++  +   D+  D A D +I+   +   I    ++ R L  +H    AAP YL+ C
Sbjct: 121 VSIDVVAGD--CDLEADSAYDVSIQVAGVGGSILRDDVVARPLAQVHCLPCAAPGYLERC 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
                  +L + + + F          + +    D    EPR + L+ +   S+    + 
Sbjct: 179 GPVEHPTDLLQRDCLVFA--TSGMPPVWRFEGAADVVEIEPR-AALRSDHGESLYAAALA 235

Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             GIA LP ++V D      LVR++        T+Y   P         +AF  F+
Sbjct: 236 ELGIATLPTFMVHDALQRNSLVRVLPQWRIAPQTIYAVLPTYRYIPASTRAFVQFL 291


>gi|15601806|ref|NP_233437.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|9658500|gb|AAF96949.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
          Length = 307

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 124/298 (41%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 12  MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 72  AVEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 132 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATQEYLAQHAPIE 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   GI
Sbjct: 191 LPQDLTHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGI 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +         L  ++ D   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 245 IRLPCDLANPLLRAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 302


>gi|295689777|ref|YP_003593470.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295431680|gb|ADG10852.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 338

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 117/291 (40%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L    +VAR G F  AA +L +S +++S  +  LE  +G++LF R  R ++LTE G
Sbjct: 36  SLTELDAVLMVARHGKFRKAALELGVSTTALSNAVGKLERTLGVRLFNRTTRSVSLTEAG 95

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     +     +       +     PSG LRI       + +    +  F+  +P + 
Sbjct: 96  RRFVAQVAPAVSDIREAMEVARAQQATPSGTLRINAFPTAAREIFSWLVLPFMRSHPQVH 155

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLS 182
           I ++ + + +DI     D  +R    +  + +I   L +       A+P YLK+   P+ 
Sbjct: 156 IDIVTEGRLVDIVAGGFDLGVR-SADLVPADMIALPLGSGRRNVVVASPSYLKSHGTPMV 214

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            Q+L  H+ +    +       + W    D       +   + ++         +   G+
Sbjct: 215 PQDLAAHSCL---RVRLPNGAIYRWPFEKDGQSVHIDVEGVITLDEASLARTAALASVGL 271

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L  +  V+   +   LVR++ED       +   YP     T   KAF +F
Sbjct: 272 TLAMESDVRGDIEAGRLVRVLEDWTPTLSPLSLYYPSRRNPTAAFKAFIDF 322


>gi|157963214|ref|YP_001503248.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848214|gb|ABV88713.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 304

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 84/295 (28%), Positives = 137/295 (46%), Gaps = 11/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF+ + L  FY VAR GSF  AA++L L+ S IS+ I  LET +  +L  R  R L LTE
Sbjct: 4   SFNLNLLSSFYAVARHGSFAAAADELCLTHSVISKHIKQLETSLQSQLIIRTTRALELTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYP 120
           +G  L+     +++++   +  + E     SG+L I     L  +  +  +L+   L YP
Sbjct: 64  EGEFLYSKCQSIFNEVLQVKDFIDEKKRVVSGRLVIKMPSILKHDDGIAKSLEFMHLTYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + ++ D+   D+  +  D A R+ K ++ SS + RK+  I  +  A+P YLK    P
Sbjct: 124 GLMLDIVFDDNLGDLVKEGVDIAFRIGK-LEDSSYLCRKVRDIDTYVVASPEYLKVAGTP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           L   EL +H  + +      C+   NW           P    L   S   + QY   G 
Sbjct: 183 LHPNELTQHKCLHYS----HCLTGLNWSFKQNGEQFNVPITPALSSMSESMLAQYACKGF 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+    D++     ++  LV +++D  T    +Y  +P A     K ++F N I 
Sbjct: 239 GVTTTLDFVTAKDIESARLVSLLKDF-TWKTELYLVFPYAAVVPLKTRSFINSIL 292


>gi|146310752|ref|YP_001175826.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145317628|gb|ABP59775.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 317

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 125/301 (41%), Gaps = 14/301 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +     LR F  V  + +F+  A +  +S S +SR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   NISIRWLRFFIDVYETQNFSVVARREGISASQVSRVIHQLEDAIGQQLFYRNTRAVMPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R    V   LE  + EL E + +PSG +R+   +  GQ  +   L      YP 
Sbjct: 66  SGHLFVRYARTVTGSLEDARRELDERTREPSGVIRMNAPVFFGQRHIAPWLPALAERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L +  ID   D AD   R+ + +  SS   R       H  A+P Y++    P 
Sbjct: 126 LNLDLTLTDDYIDPHKDAADVIFRIGE-LTDSSFHARIFGQQFYHLAASPAYVQKHGAPE 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              +L +H  + +            WLA       +  P    L  N+  +++   + G 
Sbjct: 185 GPADLARHQCLVYRGSSGPN----RWLARQPGGAWVHYPVTPRLSSNNAETLLIAALGGM 240

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI L PD+++ +      LV ++ ++     T   ++   YP        ++A  ++   
Sbjct: 241 GIVLFPDWLIGERLQRGELVALLPEIETSIKTEPQSIAAIYPHTRHPPLNVRAAIDYFVE 300

Query: 293 K 293
            
Sbjct: 301 A 301


>gi|126444368|ref|YP_001063303.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126223859|gb|ABN87364.1| transcriptional regulator [Burkholderia pseudomallei 668]
          Length = 312

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 131/302 (43%), Gaps = 13/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G
Sbjct: 9   SLDRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E    + +       G LR+ +T++    ++   L EF   +P ++
Sbjct: 69  ERFYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFTSAHPALR 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL +  Q   L  R +   T  +   A+P  L       
Sbjct: 129 VRLETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVAR 188

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S + L +   +    L       + D +    V RP  +P    L  ++   +  +  
Sbjct: 189 IDSPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLRAFAQ 245

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+ALLP+++V+D+     L+  +         VY  YP A     K++A+ +FI   
Sbjct: 246 QGGGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFIKRY 305

Query: 294 AR 295
            R
Sbjct: 306 VR 307


>gi|33601920|ref|NP_889480.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33576357|emb|CAE33436.1| probable LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 300

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 132/296 (44%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AAEQL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLDELQAFVAVVDTGSITAAAEQLGLTVSAASRTLGRLEEKLQTTLVRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+   +    +   ++  + ++    ++P+G+LR+        ++L   +  F   YP
Sbjct: 61  EEGAAFLQHARAILASVDEAEEQMAARRMRPAGRLRVDAATPFMLHVLVPLIAGFHARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  +   +D+     D A R+   ++ S+L  R + T  +   A+P YL+    P
Sbjct: 121 EVELELNSNEGIVDLIEKRTDVAFRIG-VLKDSTLHARAVGTSRLRVLASPAYLERRGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H L+ F    P+ + D+  L   D  +   R   +  +S  ++    + G G
Sbjct: 180 TRTAQLAQHALLGFTQ--PETLNDWP-LRDADGAVLRIR-PTIASSSGETLRHMALAGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L D++  ++     LV++           V   Y        ++  F + +  
Sbjct: 236 IVCLSDFMTGEDRRAGALVQLFARQTLDVRQPVNAVYYRNTALAARITCFVDHVIE 291


>gi|327482845|gb|AEA86155.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166]
          Length = 300

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + D++  F  V  SGS + AAEQL  + S +SR +S LE ++ + L  R  R L LT
Sbjct: 1   MKTNLDEMLAFVSVVDSGSISAAAEQLEQTASGVSRALSRLEDKLTVTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E  + ++      P+G+LR+ T      +++   + +F   YP
Sbjct: 61  EEGEAFLAQARRILASVEEAEEQMALRRQAPAGRLRVNTASPFMLHVIVPLIGDFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D++ +D+     D AIR+  P+  SSL  R L        A+P YL     P
Sbjct: 121 LIELELHSDDRIVDLLERRIDLAIRIG-PLPDSSLHARPLCHTTRRVLASPAYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H+LI F +  P  + D+     +           L+ +S  ++ +  + G G
Sbjct: 180 QQVEDLAEHSLIGFTE--PDRLNDWPLRHALGESWRI--NPALRASSGDTVRELALAGEG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L D++    +    LV ++          +   Y        ++  F +++  + 
Sbjct: 236 IASLSDFMTGRDRQRGELVEVLAAQRVDVRQPINAVYYRNTALASRITCFLDYLSERL 293


>gi|117920360|ref|YP_869552.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117612692|gb|ABK48146.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 303

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 140/299 (46%), Gaps = 13/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + LR+F +V   GSF  AA  + + ++S+SR+I  LE ++G KLF R  R L+LT
Sbjct: 1   MNVRINDLRLFLLVVELGSFAAAASSIGIPRASVSRRIGELEADLGTKLFTRTTRQLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   H+   E+  +LE+    ++     P+G +++    D    +    L++FL  YP
Sbjct: 61  PTGENYHQQLMEIIPRLESLNESVKNQRNMPTGSVKLGLVGDADV-VTHHLLQDFLKNYP 119

Query: 121 DIQIQLILDN-KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            I ++  + N    DI     D  I +   I+ +S + R L+ +    YA+P Y+     
Sbjct: 120 LITLETHVSNLGYHDILNYGLDACIHIGN-IKDNSFVARPLMRVCRKLYASPDYIAAHGM 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P S+ +L +H L+ +     +  + + +       +GE R+ S L  NS   I    + G
Sbjct: 179 PTSLDDLSQHALMIYRLQNGELEDRWKF------NLGEYRVKSRLVSNSSQYIRHAILSG 232

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +GI+LL +  V ++    NLV ++ +        +  YP     T   +   + +  +A
Sbjct: 233 AGISLLSELSVVEHLQLGNLVEVLPEYEVYVDDAWLVYPSRKGMTYAARLLIDSLIHEA 291


>gi|241663021|ref|YP_002981381.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|309782060|ref|ZP_07676790.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
 gi|240865048|gb|ACS62709.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
 gi|308919126|gb|EFP64793.1| transcription regulator protein [Ralstonia sp. 5_7_47FAA]
          Length = 321

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AA++L L +SS+S  +S LE ++G++LF R  R L LT+ G
Sbjct: 5   DWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKMGVRLFERSTRRLRLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +     L   + E +  +  ++
Sbjct: 65  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMREHTGLR 124

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ +  + ID      D  + + R P+  S L+ +++  +      AP  L+       
Sbjct: 125 IEVDVAPRQIDPLAQGYDIMLTVPRGPLPDSGLVAQRVFDLRRAVVVAPQLLERLGPLTH 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +   +       ++ +       I  P    ++ ++    MQ  + G G+A
Sbjct: 185 PDQLTDWPCLGTSNEA-----EWQFRTPGGETINLPLDFRMRTSNSELRMQAAIAGLGVA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +      D   +  L  ++    +P   VY  +P       K+K F + +  +
Sbjct: 240 RITSVFATDLIASGALQEVLTGFQSPPMRVYAVFPGRRLMPAKVKVFMDALHRR 293


>gi|197284246|ref|YP_002150118.1| LysR family transcriptional regulator [Proteus mirabilis HI4320]
 gi|194681733|emb|CAR40894.1| LysR-family transcriptional regulator [Proteus mirabilis HI4320]
          Length = 306

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 124/292 (42%), Gaps = 12/292 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  + + GS   AA+ L +S++ ++R ++ +E   G++L +R  R  +LT  G  +++
Sbjct: 8   EVFVTIVKQGSMIKAADYLGMSRAMVTRYLNEMEEWAGVRLLHRTTRKQSLTSVGELVYQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            + ++    E     + + S + SG +RI T   L    L   + EF+ LYP I + L +
Sbjct: 68  QSLQLLEMAERIPANIPKESHQISGLVRITTAQSLANCALSVAITEFIQLYPLIAVDLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +++  +  D A+R+   ++  +LI R L        A   YL     P +  +L  
Sbjct: 128 SNQTVNLIEERIDIALRITNHLE-PNLIARPLAKCFSVVCAHKDYLAKHGIPNTPDDLTY 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  +T+        E     +  D     P    L  N  + ++Q  + G+G++L P   
Sbjct: 187 HQCLTYRFFGSSLWE----FSLGDERYSVPVGGNLSANESVVLLQATLQGAGVSLQPYCS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            K   +   L  ++ D       +Y            ++   +F+     DW
Sbjct: 243 AKPYLERGELEILLADYQPQPMGIYAVLASRQNMPAAVRVLLDFLV----DW 290


>gi|290509864|ref|ZP_06549235.1| transcription regulator protein, MDR efflux pump cluster
           [Klebsiella sp. 1_1_55]
 gi|289779258|gb|EFD87255.1| transcription regulator protein, MDR efflux pump cluster
           [Klebsiella sp. 1_1_55]
          Length = 304

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 11/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L +F  +   GSF+ AA  L  S+   +  I  LE  +G +L  R  R +  T 
Sbjct: 1   MDKLDTLTLFVRIVERGSFSAAAADLGFSRPVATAAIKALEASLGARLLQRTTRHVRPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS  ++    +   LE      + +    +G +R+    +L + LL   L +FL  YP 
Sbjct: 61  EGSLYYQRCVAILAALEEA---NRSAGGSIAGIIRVDVAGNLARTLLLPALPQFLARYPA 117

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +Q+    +D+D+  +  DC IR    +  S +I R    +     A+P YL     P 
Sbjct: 118 MTLQIGESERDVDLVREGVDCVIR-GGHLPDSEMICRPFARLQEITCASPAYLARYGTPH 176

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           +I+ L  H +I F  +  +         T D    E  + C L  +      +   LG G
Sbjct: 177 TIEGLTGHVMIGF--VSSRTQRTLPLSFTQDGRQSEVSLPCRLLTSDADVGAEAARLGFG 234

Query: 241 I--ALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  A LP       +  L  ++ D       +   YP   + + +++ F +++  
Sbjct: 235 LYQAPLPRLEADLASGALTEVLADFRPAPLPLSLLYPSNRQLSARVQVFIDWVTA 289


>gi|73538942|ref|YP_299309.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122279|gb|AAZ64465.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 300

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 128/296 (43%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L  F  V  +GS T AAEQL L+ S+ SR +S LE ++   L  R  R L LT
Sbjct: 1   MKTTIDELLAFAAVVDTGSITAAAEQLDLTVSATSRTLSRLEEKLQTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+        +   ++  + ++    ++P G+LR+        ++L   ++ F   YP
Sbjct: 61  EEGAAFLTHARAILAMVDDAEEQMAARRMRPVGRLRVDAATPFMLHVLVPLVEGFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++++L  +   ID+    AD A R+   ++ S+L  R + T  +   A+P YLK    P
Sbjct: 121 DVELELHSNEGIIDLIEKRADVAFRIGS-LKDSTLHARPIGTSRVRVLASPDYLKRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H L+ F    P  + D  W    D          +  +S  ++    + G G
Sbjct: 180 TRPAQLAQHALLGFSQ--PDSLND--WPLRDDDGSIVHIKPAIASSSGETLRSLALAGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L D++ +++     LV +           +   Y        ++  F + +  
Sbjct: 236 IVCLSDFMTREDRHSGRLVPLFARQTLDERQPINAVYYRNTALASRITCFVDHVVE 291


>gi|150377780|ref|YP_001314375.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032327|gb|ABR64442.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 300

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 121/302 (40%), Gaps = 5/302 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +L     VAR G F  AA +L +S S++S  I+ LE  + ++LF R  R + L+
Sbjct: 1   MRASLVELEAVAAVARHGGFRPAARELGMSSSALSHAIAALEERLAVRLFNRTTRSVALS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +     +     LE     + E S +PSG+LR+       + LLQ  + E+   YP
Sbjct: 61  AAGEQFLSEIAPALQTLEKAIENVGEHSERPSGRLRLNMAPGAARILLQPLILEYSRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I+++ +N  +D+     D  IRL   I    +    +  +      +P Y    ++P
Sbjct: 121 EVDIEVVTENALVDVIGKGFDAGIRLTDSISPDMVAVPIIPKMRSVVVGSPRYFDGRQKP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +   +L +H  I       +                      L  +    I++  + G G
Sbjct: 181 VVPGDLSQHICIQMRMTSGRFYRWE--FEKRGETQSIAVTGHLTFDGSDLILEAALAGFG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +A L ++ +  +    NL+ ++ED       +   + +      KL+     I   A  +
Sbjct: 239 LAFLGEHALAPHIASGNLIPVLEDWSPHYAGLSLYFAQRRHMPAKLRVLIELIRQSATRY 298

Query: 298 KF 299
            +
Sbjct: 299 NW 300


>gi|167644617|ref|YP_001682280.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347047|gb|ABZ69782.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 301

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW   R F  V   GS + AA  L L+Q ++ RQ++ LE  +G+ LF R  +GL  T+  
Sbjct: 9   DWSLYRAFLAVLTEGSLSAAARTLGLTQPTLGRQVAELERALGVALFTRSPQGLKPTDAA 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +             +     G +RI  +  +G  +L   L +F  L+P + 
Sbjct: 69  LDLAPHAKAMAGAASAMARAASGAGNTARGVVRITASEIIGAEVLPQILADFRPLHPGVV 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L LDN+  D+    AD A+R+ +P Q + L+ R+L   H+  YA   Y++    P ++
Sbjct: 129 VELSLDNQQQDLLRGAADIAVRMVRPTQDA-LVARRLADTHLGLYAHRRYVEANGAPATL 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H ++ F    P           V R    P+    + +S L+ +     G GI  
Sbjct: 188 DDLRDHAIVGFDRGTP------FLRGLVQRVPLPPQGFAFRADSDLAQLAAVRAGFGIGF 241

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +   I + +P+L+ +    I     V+    E L+ T +++A  + +  
Sbjct: 242 IQHGIARRDPDLIPLCPGQIGFDLPVWLVMHEDLRATPRMRAMFDHLAE 290


>gi|295699490|ref|YP_003607383.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438703|gb|ADG17872.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 304

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 129/291 (44%), Gaps = 8/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + + ++L +F  V  +GS + AA +L L+++ +S  +  LE EVG  L  R  R L +TE
Sbjct: 6   NVNLNRLAIFVAVIDAGSLSAAATRLGLAKTMVSTHMQRLEAEVGASLLVRTTRRLGVTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  + ++    E     L   +    G LR++   D G  ++   L E    +  
Sbjct: 66  AGRTFYEASVKILRAAEDALNALGGETSPVRGTLRVSAPNDYGTLVVTPALVELRRAHAQ 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+  ++ +D+  D  D AIRL + +  S+    KL +      A+P +L+    P 
Sbjct: 126 LDVELLSSDRYVDLIADGIDVAIRLGR-LADSNYRAVKLGSFVKWLVASPEFLRTWGVPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSG 240
           +  EL+         L      D   L  VD      R  S L+VN+  +     + G G
Sbjct: 185 TPAELETLPYCALSVLPHPLTLD---LRHVDGKAASVRCESALRVNTANACRAATLAGGG 241

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           I LL D+ + D+     L+R++ +  T   ++   +P       K++A  +
Sbjct: 242 IGLLTDFSIADDVAAGRLIRLLPEWATAPASIQAVFPPTSHPPAKVRALID 292


>gi|78063889|ref|YP_373797.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971774|gb|ABB13153.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 327

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 117/295 (39%), Gaps = 4/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R F  V ++GSFT  A Q  ++ + +SR ++ LE    I+L  R  R + LT
Sbjct: 1   MDM-LENMRTFVRVVQAGSFTAVARQGDIATAQVSRAVASLEDYAQIRLLNRTTRKIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +       +   ++    E + + V+P G+LR+ T   LGQ+ +  +   +  LYP
Sbjct: 60  DSGRRYFERLLAILGDVDQANAEARNALVRPYGRLRVHTMPGLGQSHVTASAVAYQALYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ +++    +  ++  +  D ++     +  S  I       +    A+P YL     P
Sbjct: 120 EVSVEMTYSQRLPNLVEEGYDVSVVTASSLPDSGYIAHSCGRSYSVLVASPAYLARHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H  +          E        +        +    N+  ++      G G
Sbjct: 180 RNPAELAGHTCLCLDTPADANGEWHLHGGDGEVVTHTVLAAPFHANAPEALSIALRAGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L  Y V D+     LVR++ D       VY  +        K++ F + +  
Sbjct: 240 IGSLAIYSVIDDLRSGRLVRVLPDFRLTMLDVYAMFASRRFVDAKIRTFLDHLRA 294


>gi|292487207|ref|YP_003530079.1| carbapenem-hydrolyzing beta-lactamase transcriptional activator
           [Erwinia amylovora CFBP1430]
 gi|291552626|emb|CBA19671.1| Carbapenem-hydrolyzing beta-lactamase transcriptional activator
           [Erwinia amylovora CFBP1430]
 gi|312171308|emb|CBX79567.1| Carbapenem-hydrolyzing beta-lactamase transcriptional activator
           [Erwinia amylovora ATCC BAA-2158]
          Length = 305

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 123/293 (41%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFTALNDATRKLQARSA--KGALTVSLLPSFAIQWLVPRLTSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D AI   +      L   KL   ++    +P  L       S  
Sbjct: 126 RIQAVDRDEEKLADDVDVAIFYGRG-NWPGLRAEKLYAEYLLPVCSPQLLTGAHPLTSPT 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H L+   D   +  + +     ++    +        +    ++Q  + G G+AL 
Sbjct: 185 ALAHHTLLH--DASRRDWQSYTRQLGLNTINVQ---HGPIFSHSAMVLQAAIHGQGVALA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 240 NNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|167617088|ref|ZP_02385719.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 313

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 132/293 (45%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +     V  SGSF+ AA +L  ++S +S ++  LE  +G  L  R    L LTE G 
Sbjct: 4   FSDMSTLVAVVESGSFSEAARRLGTTKSIVSHRVQQLEKRLGCALLTRGRP-LQLTEPGR 62

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  +  +LE  + E+QE+     G LR+        + L   L  F   Y  + +
Sbjct: 63  NFFERSRILLQELERMEDEVQEAGASLHGTLRLTVPATFVTHRLAPLLARFAAKYQALCV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +++  ++   + D AIR+ + +  S+L+ R L   H    A+P YL     P    
Sbjct: 123 EVEAEDRLSNLQDGHFDIAIRIGR-LADSNLVARPLCANHHLICASPAYLARRGVPAHPA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL  H+ + + +  P  M    W   +D      R+   ++ +S   ++   + G G+A+
Sbjct: 182 ELLHHDGLIYLNREPNGM----WNLPLDGAQQSFRVRTQMRSDSGHQLLAGALAGLGLAI 237

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP ++  D     +LV ++ D I P   +   Y + ++ + +++A   F+  +
Sbjct: 238 LPTFLAADALLAGDLVPVLTDHIPPGGQISALYRKTIRTSPRIQALIEFLVDE 290


>gi|152986169|ref|YP_001345594.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961327|gb|ABR83352.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 296

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V   GS   AAE L L+ S++S+QI  LE+   + L +R  R LTLTE
Sbjct: 1   MDSLKGMAIFATVVDKGSMAAAAESLGLTPSAVSQQIRRLESRAQVTLLHRTTRRLTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  +++    E  +  L E    P G+LR+A  + L  +L+   LK  L  +  
Sbjct: 61  AGEAFYRSCAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGLSGSLITQALKPLLEDHRQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL   ++ ID+  +  D AIR+   +  SSL+ R L   +    AAP YL+      
Sbjct: 121 LRLQLFFQDERIDLVAERIDLAIRVGN-LADSSLVARHLGDWNHILCAAPGYLRQRAPLK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L + + I         +         V +   EPR++    N  L++ Q+ + G G
Sbjct: 180 RPEQLLELDWIALNTASQFNLLTLTGADGEVCKLRLEPRVAA---NGMLAVRQFTLDGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++  P   V+   D   L R++ +   P   ++   P       K+K     +
Sbjct: 237 VSCQPLPEVREALDAGRLQRLLPEWKLPDLGIHAVTPRRDAQPAKVKVAIEAL 289


>gi|325168326|ref|YP_004280116.1| transcriptional regulator LysR [Agrobacterium sp. H13-3]
 gi|325064049|gb|ADY67738.1| putative transcriptional regulator LysR [Agrobacterium sp. H13-3]
          Length = 299

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 116/295 (39%), Gaps = 5/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + + VF  VA  G+F  AA++L +++S++S+ I  LE   GI L  R  R + LT
Sbjct: 1   MIIDLNLVPVFLAVAEEGNFRAAADRLGVTRSAVSQGIRRLEDICGIALVSRTTRSVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++     S+   ++ +   E      +PSG LRIA T      L    +  F   +P
Sbjct: 61  EAGNRFRETLSQPMAEVRSA-FENVAGDARPSGLLRIAVTSIAEHFLSGPLIASFAEAHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I + + +   DI     D  +RL + I+   +             A P Y +    P
Sbjct: 120 GITIDVTVTDDVFDIVAAGFDAGVRLGEVIEQDMVAVPLTREEKEVVVATPRYFEVHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H  I +          +        P+       +  N    +++  + G G
Sbjct: 180 RHPRDLVRHRCIGWRPSPSAAPYRWE-FEENGIPLDVAVEPQITTNDLYLMIRTALAGGG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I    +   +   +   L+  + + + P    +  +P       KL+A  + +  
Sbjct: 239 ITFALEETFRSYIERGELITALAEYLPPFPGFFLYFPNRRNMAPKLRALIDHVRA 293


>gi|229522577|ref|ZP_04411993.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229340562|gb|EEO05568.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 300

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 126/298 (42%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 5   MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 65  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  + AD A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 125 VHFDVLASDRFSQLVDERADIALRFTQQ-PDENLIARRLLEVGMVVCATQEYLAQHAPIE 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   GI
Sbjct: 184 LPQDLAHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +         L  ++ +   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 238 IRLPCDLANPLLRAGQLQALLPNYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 295


>gi|149925447|ref|ZP_01913711.1| transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
 gi|149825564|gb|EDM84772.1| transcriptional regulator, LysR family protein [Limnobacter sp.
           MED105]
          Length = 301

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 117/286 (40%), Gaps = 6/286 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F  + R  S   AA    ++  ++SR+++ LE  +G++L +R  R + L+ +G 
Sbjct: 4   LSDLAFFSELVRHESLASAAMAFDVTPPAVSRRLAALEKRLGVRLLHRSTRRIGLSAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     + +  +++  +  L+     P G LR+  ++  G+  +   +  +   +P +++
Sbjct: 64  RYLAEGANILRQIDVLEATLRAGQDTPRGLLRVNASLGFGRKHVANVVSAYHAEFPAVEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  ID+     D ++R  +P     LI +KL +      AAP YL    E  +  
Sbjct: 124 ILELTDHPIDLIEGGFDLSVRFGEP-PDQRLIAQKLASNRRILCAAPSYLAATGELNTPG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ +               L    +         +  N     +Q+ + G G+ L 
Sbjct: 183 DLTRHDCLVIRQENHTFNNW--QLRNGKQETTVKVHGPVSSNDGDVSVQWALQGKGVLLR 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            ++ ++       LVR++ D       ++   P A     K + F 
Sbjct: 241 SEWDIQQELKTGVLVRVLPDWAGAPADIFAVCPYANPMPAKTREFI 286


>gi|134297077|ref|YP_001120812.1| DNA-binding transcriptional activator GcvA [Burkholderia
           vietnamiensis G4]
 gi|134140234|gb|ABO55977.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 323

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 130/297 (43%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R F   AR  +F+ AA++L+++  ++S Q+  LE E+G++LF R+ + L LT+ G 
Sbjct: 9   LNAIRAFEAAARHENFSRAADELYVTHGAVSHQVRALEDELGVQLFTRNGKRLCLTDAGM 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        +     +++ S      +L ++         +   +  F+  +P+I +
Sbjct: 69  RYAQQVRAALMVIADATRDVRASDRGR--RLVVSMLSSFAARFITPRIGTFIERHPEIDV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N   D + D  D AIR         L    L         +P  L   + P +  
Sbjct: 127 ELQSTNSLTDFARDDVDLAIRFGSG-NYPGLHVEPLFEEVFFPACSPT-LNGGKLPQTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  + L+   D + +   +   L T    + EP+   L  +S   ++   + G GIAL+
Sbjct: 185 DLAHYRLLRSDDELWRPWFNAAGLDT----LTEPKRGILYQDSSNLLL-AAIEGQGIALV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +  D+     LVR+ +      +  +F  P  L  T +++AFR ++  +  +++
Sbjct: 240 RRSLAVDDLLAGRLVRLFDIAGPSPWHYFFVCPPPLIATPRVQAFRAWLLQEVAEYR 296


>gi|329298543|ref|ZP_08255879.1| putative transcriptional regulator [Plautia stali symbiont]
          Length = 301

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 120/293 (40%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L VF ++ R  SF  AA +L ++ S+IS  +  LE  +G++L  R +R +  T+ G
Sbjct: 8   ELADLNVFLLICRRKSFRLAALELGVTTSAISHTLRSLEARLGMRLLNRTSRAVVPTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   R     + ++E    +L      PSG+LR+    D GQ L +  L  F+  YP++ 
Sbjct: 68  AAFLRHLETGFAQIELALNDLHLYRESPSGRLRLNIPPDAGQLLFRPLLARFMATYPELS 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN  +DI     D  IR    +    +       +     A+P YL++       
Sbjct: 128 LEITVDNNLVDIIGSGYDAGIRYGVSVPKDMIAMPLTPKLRWIVVASPDYLRDAPPLQHP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I          +       V   +  P    L +N    I+     G G+  
Sbjct: 188 DDLRNHRCIRMRLGNGTLYKWPLAQGKVAYEVDVP--GTLTLNESDMIIDAVAGGYGLGY 245

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P+  V+    +  LVR++ D  +    +   YP+  +    L+     I  +
Sbjct: 246 CPERYVQAQLASGQLVRVLTDWCSEDEPLVMYYPDRRQLHPGLRRLIEMIRAE 298


>gi|317492111|ref|ZP_07950541.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919816|gb|EFV41145.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 300

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 137/294 (46%), Gaps = 8/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +++ VF VV   GSF+ A  +L +S S++S+ +  LE E+ + L +R  R LTLT+
Sbjct: 1   MDKLNRMAVFAVVVAEGSFSAAGRRLGMSPSAVSQHMRTLEQELRVTLLHRSTRKLTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     + H+    +  L E      G+LRIATTI LG   L   L   L  +P 
Sbjct: 61  AGAAFYPGCKAMLHEASQAEQRLAEMRDTLVGELRIATTIGLGGAPLAQALAPLLQAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++ +++ I++    AD A+R+ + +  +S I   L    M   A+P YL  C  P 
Sbjct: 121 LSLRILANDEIINLIEVRADIALRVNRQLDDASYIAHPLAVWPMVLCASPRYLNRCGIPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL +H  +   +       + +      R I  P I+    +S   +  + + G GI
Sbjct: 181 TPDELSQHQWLVNTNEAVPASIELHRNNGETRKISLPDIAT-GSSSMNVLRAFTLEGIGI 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALK---NTGKLKAFRNF 289
           ++ P Y ++      +LV ++ +       ++    E +    +   ++  R++
Sbjct: 240 SIQPLYEIEYELKRGDLVLLLPEWRPAPLKLHALTLERVHTEKSRQAMQCLRDY 293


>gi|156935112|ref|YP_001439028.1| hypothetical protein ESA_02963 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533366|gb|ABU78192.1| hypothetical protein ESA_02963 [Cronobacter sakazakii ATCC BAA-894]
          Length = 311

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 127/300 (42%), Gaps = 14/300 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +   L++F  V    SF+  A +  +S S ISR +  LE  +G +LFYR+ R +  TE
Sbjct: 6   AVNIRALQLFISVFDGQSFSAVARREGVSASMISRTVRQLEEALGQQLFYRNTRAVIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +    +  +    + ELQ+ S++PSG LRI   +  GQ  +   L      YP 
Sbjct: 66  AGRLFAQYARGITEQFSEARRELQDRSLEPSGLLRINAPVFFGQRHIAPWLTGLAERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   +  +D   D  D  +R+   +  SS   R       +  AAP YL     P 
Sbjct: 126 LQLALTQTDDYVDPHRDATDLIVRIG-TLTDSSFHARVFCEQRYYFAAAPRYLARYGAPA 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGS 239
           S +EL  H  + +            WLA       +  P  + L  N+  S++   + G 
Sbjct: 185 SPEELQAHQCLVYSGSSGPN----RWLARKPGEPWVHYPVNARLVSNNAHSLLTAALDGM 240

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+ L PD++  +      LV+++ +      T +  +   YP A      ++A  ++   
Sbjct: 241 GLVLFPDWMTGEWLAQGKLVKVLPEYEAAINTEAQHIAAIYPNARHPPLNVRAAIDYFVE 300


>gi|37223140|gb|AAQ90169.1| PltR [Pseudomonas sp. M18]
          Length = 343

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 7/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D   ++  VA +GSF+       +  SS+ R+I+ LE ++  +L  R  + L LTE G+ 
Sbjct: 8   DDFDLYISVALTGSFSETGRVFEMPASSVMRRINNLEEKLETRLINRSTKKLVLTETGAL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             +   ++   +   + E++E +    G LR++  +  G+  +   +   L   P +++ 
Sbjct: 68  FLKHARKIPRNINQARNEIKEHTSSAVGTLRVSAPVAFGRRHIAPLVSTLLKKNPGLKLD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             L+++  D   +  D  IRL   +  SSLI  KL  +     A+P YL     P + +E
Sbjct: 128 FSLNDRIADPVGEKLDLCIRLG-ILPDSSLICSKLAGLRRVLCASPEYLLKHGLPRTPEE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L++H  +         +      A + R I    +S L VNS   +++  + G GI   P
Sbjct: 187 LERHTCLQHNGCSNASLSWQFSSADITRRIRISPVSRLSVNSAELLVEGALQGLGIIHAP 246

Query: 246 DYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFR 287
            ++V +   +  LV  ++    P      +Y   P+      K+  F 
Sbjct: 247 TWLVHEEVASGRLVTFLDRHALPEQDQGGIYALRPQGSVVPAKISLFL 294


>gi|167915067|ref|ZP_02502158.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
          Length = 329

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 132/290 (45%), Gaps = 9/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +A   SF+ A++ L + +++++  +  +E  +G +L  R  R + LT+ G   +
Sbjct: 1   MQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVRLTQDGEAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +   LE  +   + +   P G LR+     L +  +   L +FL  YP I++ + 
Sbjct: 61  RRCVRLIADLEEAEGAFRAA--APRGLLRVNLQGTLARYFVVPALPDFLARYPGIRLHIG 118

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP  +  L 
Sbjct: 119 EDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELAALA 177

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +  +     +      TVD  + E R+ + + V          V G GI  +P 
Sbjct: 178 AHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQVPR 235

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           Y + D   +  L  ++     P   V   YP + + + +++AF  ++  +
Sbjct: 236 YRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRER 285


>gi|238028742|ref|YP_002912973.1| DNA-binding transcriptional activator GcvA [Burkholderia glumae
           BGR1]
 gi|237877936|gb|ACR30269.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 333

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 124/297 (41%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SF+ AA++L ++  ++S Q+  LE E+G+ LF R+ R L LTE G 
Sbjct: 9   LNALRAFEAAARHESFSRAADELFVTHGAVSHQVRALEEELGVPLFTRNGRRLALTEAGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R        L     E+         +L +++        +   +  F+  +P I +
Sbjct: 69  RYARQVRAALTMLMDATREVCAPDRPN--RLIVSSLQSFAARWITPRIGSFIDRHPAIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +   D S D  D AIR  +      L   KL         AP  L     P    
Sbjct: 127 ELKSTDSLTDFSRDDVDVAIRFGRG-HYPGLYVEKLFDEAFLPACAPT-LNGGVLPREPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+   D + +   D   LAT+  P        L       ++Q  + G GIAL+
Sbjct: 185 DLARYPLLRSDDELWRPWFDAAGLATLTEPK-----RGLLFQDSSQLVQAAIDGQGIALV 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +     +   +VR+ + +    +  YF  P +     +++AFR+++  +   ++
Sbjct: 240 RRSLAAAELEAGRIVRLFDILGPSPWHCYFVCPHSRIQLPRVQAFRSWLLEELARFE 296


>gi|206558788|ref|YP_002229548.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198034825|emb|CAR50693.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 305

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G 
Sbjct: 9   LNALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +  ++   SG L ++ T       L   L +F    PD+ +
Sbjct: 69  DYLPPVRNAFRQIADASQRVSGAAD--SGVLTVSVTPFFASAWLVPRLAQFRQACPDVDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  +   D + D  D AIR     +   L   +L+T+ + A A+P  +     P +  
Sbjct: 127 QVVTSHALADFARDGVDVAIRHGLG-RYIGLCSERLLTVEIVALASPDLVARLGMPATPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL     +   D   K    +     +D   G PR      +    ++Q  V G G  LL
Sbjct: 186 ELVGWPQLH--DAERKGWHIWFGAQRID-DFGPPRGPAF--DDSGLLLQAIVAGQGAGLL 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V+    +  LV++ +      F  Y  YP       K+ AFR +I   A+
Sbjct: 241 PAAMVRGELASGRLVQLADVAWLDDFAYYLVYPPHHAERPKVAAFRRWILDAAQ 294


>gi|292900417|ref|YP_003539786.1| regulatory protein for glycine cleavage pathway [Erwinia amylovora
           ATCC 49946]
 gi|291200265|emb|CBJ47393.1| regulatory protein for glycine cleavage pathway (LysR-family
           transcriptional regulator) [Erwinia amylovora ATCC
           49946]
          Length = 305

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 123/293 (41%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFTALNDATRKLQARSA--KGALTVSLLPSFAIQWLVPRLTSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D AI   +      L   KL   ++    +P  L       S  
Sbjct: 126 RIQAVDRDEEKLADDVDVAIFYGRG-NWPGLRAEKLYAEYLLPVCSPQLLTGAHPLTSPT 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H L+   D   +  + +     ++    +        +    ++Q  + G G+AL 
Sbjct: 185 ALAHHTLLH--DASRRDWQSYTRQLGLNTINVQ---HGPIFSHSAMLLQAAIHGQGVALA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 240 NNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|300906662|ref|ZP_07124351.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300958128|ref|ZP_07170286.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300315194|gb|EFJ64978.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300401563|gb|EFJ85101.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
          Length = 305

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 129/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAKHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR  I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQRILAKA 292


>gi|298486300|ref|ZP_07004363.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159307|gb|EFI00365.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 302

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 134/296 (45%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  +  SGS + AA+    S +S+ R ++ LE+ +G++L  R  R + LT+
Sbjct: 1   MDRLKAMANFVRIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +  R T  +    +  +  L        G LR+   ++ GQ  +   +  FL  + +
Sbjct: 61  EGEEYLRWTRRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLCEHQN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L+++ + +  +  D A+R+   +  S+++ R++    + + A+P YL+      
Sbjct: 121 INVELNLNDQIVPLLDERLDLALRIGH-LPDSAMVARRIGATRLVSCASPGYLRTAPLLD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L +H  IT      +      +     + + +  I  L  N   +    CV G G+
Sbjct: 180 TPKSLPEHACITLASHGRQW-----YFRHQGKELIQDIIPRLVCNQVRAASLACVQGLGV 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             L  Y V D   +  L+R++ D  T    +   YP AL+ + ++KAF  +   + 
Sbjct: 235 TRLMHYQVADELADGRLIRVLNDFETADLPIQLVYPHALQLSPRVKAFVEWAIPQL 290


>gi|170691731|ref|ZP_02882895.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143015|gb|EDT11179.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 304

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 121/296 (40%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  V  +G F  AA  +  S S++S  +  LET  G++L +R  R +  TE G
Sbjct: 6   NIKDLTAFVAVIEAGGFRDAARAIGSSPSAVSEAVRRLETRTGVRLLHRTTRSVAATEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L          LE     + +   KP GKL++   +   + +L   L  FL +YP+I+
Sbjct: 66  TRLLSQLKPALDGLEAALDVVNQFRDKPFGKLKLNVPVVAARLILPRILPAFLSMYPEIE 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCREPL 181
           ++++ D+  +D+     D  IR  + +Q   +I   +      M   A+P YL     P 
Sbjct: 126 LEVVADDSFVDLLSAGCDAGIRYGESLQQD-MIAVPIGPREQRMALGASPAYLARHGRPE 184

Query: 182 SIQELDKHNLITFGDLIPKCMED-FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L +H  +          E  F       R   +  +     +S    +   + G+G
Sbjct: 185 HPDDLVRHACLRHRFSSGAIAEWLFERDGKTVRIEPQGPLIVRTGSSAELSVDVALAGNG 244

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  L D  ++   ++  L  ++E         Y  YP        L+AF +F+  +
Sbjct: 245 IVQLFDDWLRPHFESGALEPVLEPWWLRFPGPYLYYPGRRYLPAPLRAFVDFVKAE 300


>gi|220918753|ref|YP_002494057.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956607|gb|ACL66991.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 317

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 134/289 (46%), Gaps = 11/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  VA  G F+ A   L  + S++++ ++ LE  +G +L  R  R + LT +G   
Sbjct: 11  EMEAFAAVAELGGFSAAGRALGKTPSALNKLVARLEARLGARLLTRTTRAVRLTAEGEAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H+    +  ++E  + E +     P G++R+   +  G + L   ++ FL   P + + L
Sbjct: 71  HQRALRILAEVEEAESEARG--GAPRGRVRVNANLPFGVHCLLPVVRSFLEANPGVTLDL 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++ +D+    AD AIR+  P+++S L+ RKL    +   A+P YL     P +  +L
Sbjct: 129 VLTDEVVDLVERRADVAIRVG-PLRASGLLARKLGESPVAVVASPDYLARRGTPHTPADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I F     + ++D+         +  P    ++     +  +  + G+G+A L  
Sbjct: 188 GAHERIGF--TFARTLQDWP-FRQGGEEVRVPVRGAVRAGDGETARRLALAGAGLARLAL 244

Query: 247 YIVKDN---PNLVRIMEDVIT-PSFTVYFCYP-EALKNTGKLKAFRNFI 290
           + V D+     LVR++E      +  ++  +   A     +++AF  F+
Sbjct: 245 FQVTDDLEAGRLVRVLEAFEPGDALEIHALFLGPAGSVPARVRAFVEFL 293


>gi|94499203|ref|ZP_01305741.1| putative transcriptional regulatory protein (LysR family)
           [Oceanobacter sp. RED65]
 gi|94428835|gb|EAT13807.1| putative transcriptional regulatory protein (LysR family)
           [Oceanobacter sp. RED65]
          Length = 300

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 140/301 (46%), Gaps = 13/301 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  VA++ SFT A ++  +  SSISR+I+ LE  +G  L  R  R + LTE
Sbjct: 1   MDQLKAMQYFAEVAQTSSFTAAGKRFDVPASSISRRIADLEQHLGATLLNRTTRLVHLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +     +  ++E ++  +++   +P GKL I++ +  G+ +L   L EF  L+P 
Sbjct: 61  VGQEYYAQVKSILDQIERSETYVRQYQSEPQGKLVISSMVGFGERILIPLLDEFRALHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + L ++   ++ D  D AIR      +  ++ +KL+       A+P YL+    P+
Sbjct: 121 VVLDVRLSDEVSQLNRDQVDIAIR-GGYAPNERVVAKKLMNNQFIPVASPSYLEANGLPI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L KH  + F   +      +           +P    L  N+   ++   + G G+
Sbjct: 180 KHEDLKKHQGLFFRTPMGPTPWLYQQNGQWHDVSPKP---TLISNNGKWLIARAIEGQGL 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITP-----SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +LP ++V+   ++  LV +  D          F VY  Y   +    K+KA  +FI  +
Sbjct: 237 LMLPAWVVQSQLESGELVSLKLDPPLQISDGAGFGVYILYETDMYRIPKIKAAVDFILAR 296

Query: 294 A 294
           A
Sbjct: 297 A 297


>gi|23502686|ref|NP_698813.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|23348697|gb|AAN30728.1| transcriptional regulator, LysR family [Brucella suis 1330]
          Length = 301

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 7/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 8   AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 68  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 128 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L++H LI + + +       N        I        +V+S L  ++    G+GI
Sbjct: 187 SPEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGI 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 242 GILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 285


>gi|170749729|ref|YP_001755989.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656251|gb|ACB25306.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 296

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 120/297 (40%), Gaps = 11/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  +R+F  VA + SF   A  LH+S  +++R ++ LE  +G +L  R  R + LTE
Sbjct: 1   MDRWQAMRIFAKVAETASFAQTARLLHMSPPAVTRAVAALEETIGARLLIRTTRSVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS+ +     +   +   +     S+  PSG L +  ++  G+  +   + ++L  YP 
Sbjct: 61  AGSRYYEDCRRILADIAEAESAAAGSNATPSGTLAVTASVLFGRMHVLPIVTDYLDTYPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  + +  ++ + I  +  D AIR+   +  S     ++ ++      AP Y      P 
Sbjct: 121 MAARTLFVDRPVSIVEEGIDVAIRIGH-LTDSGFTAARVGSVRHVICGAPDYFVRHGVPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H +             F       R         LQ N+    +     G G+
Sbjct: 180 TPADLKRHRIAVSTGAFASPEWRF------GRNERVVIHPTLQGNTNEVSIGAARSGWGL 233

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A + +Y +     +  L  ++ +       V+  YPE      K++ F +    + R
Sbjct: 234 ARVLNYQIGPDLRDGRLQIVLAEYEEAPLPVHVLYPEGRHAPAKVRTFVDLAVSRLR 290


>gi|15596325|ref|NP_249819.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116049060|ref|YP_792138.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892906|ref|YP_002441775.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254239499|ref|ZP_04932821.1| hypothetical protein PA2G_00112 [Pseudomonas aeruginosa 2192]
 gi|296390504|ref|ZP_06879979.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313106097|ref|ZP_07792354.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9947048|gb|AAG04517.1|AE004543_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115584281|gb|ABJ10296.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126192877|gb|EAZ56940.1| hypothetical protein PA2G_00112 [Pseudomonas aeruginosa 2192]
 gi|218773134|emb|CAW28946.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310878856|gb|EFQ37450.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 303

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 117/290 (40%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L VF  + R  SF H+A++L +S S++S  +  LE  +G+KL  R +R +  T+ G
Sbjct: 8   ELADLNVFMTIVRRRSFRHSAQELGVSTSALSHSMRNLEARLGVKLLNRTSRSVVPTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S L     + +  +     EL      P G+LR+    D  + LL   L+ F   YPD+Q
Sbjct: 68  SALAAKLEDGFQVIGEALGELDAYRTSPVGRLRLNVPRDASRLLLGPVLRRFTEAYPDLQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L ++++ +DI  D  D  IR    +    +       +     A+P YL     P   
Sbjct: 128 LELSVEDRMVDIVADGYDAGIRYGGTVPQDMVAVPLTGELRWVVAASPDYLARHGVPQRP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I          +    L   +R +         VN   + +   + G G+A 
Sbjct: 188 DDLLRHACIRMRLGDNSFYKWE--LGDGERMVEVDVPGPFSVNESNTAVAAALDGVGLAY 245

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +  + +   +  L  ++ D  +        YP   +    L+     I
Sbjct: 246 CLEVGIAEELRSGRLQLVLPDWTSMGAPFCLYYPSRRQPQPGLRQLMEMI 295


>gi|167723769|ref|ZP_02407005.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 290

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 133/295 (45%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  +A   SF+ A++ L + + +++  +  +E  +G +L  R  R + LT+
Sbjct: 1   MDRFQEMQVFVRIAERQSFSRASDDLRIPRVTVTNLMKRMEARLGARLLERTTRTVRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R    +   LE  +   + +   P G LR+     L +  +   L +FL  YP 
Sbjct: 61  DGEAYYRRCVRLIADLEEAEGAFRAA--APRGLLRVNLQGTLARYFVVPALPDFLARYPG 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +  D++ +D+  +  DC +R    +Q SS++ R++  +     A+P YL    EP 
Sbjct: 119 IRLHIGEDDRFVDLVREGVDCVLRSGN-LQDSSMVGRRVAQLEQVTVASPGYLARHGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            +  L  H  + +  +     +      TVD  + E R+ + + V          V G G
Sbjct: 178 ELAALAAHRAVDY--VSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  +P Y + D   +  L  ++     P   V   YP + + + +++AF  ++  
Sbjct: 236 IVQVPRYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRE 290


>gi|152978820|ref|YP_001344449.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150840543|gb|ABR74514.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 290

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 137/290 (47%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D +R+F  V ++GS   A+E   +  S +SR+++ LE  +G KL  R  +G+TL +
Sbjct: 3   KVSLDDMRLFVSVVQAGSLHLASELTGVPISRLSRRMTQLERALGSKLMDRGKKGVTLND 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +    +    E     +Q+S  KP+G LRI+   D+ + L+   L  +L   PD
Sbjct: 63  LGLPFFQRAQHMLQLAEQAVSGVQDSLTKPNGLLRISVAGDIMRMLIAPYLPAYLAENPD 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I +    + I++  D  D AIR+   I++ +++ RK + I    Y+AP YL+      
Sbjct: 123 VNIDIHQSPQKINMIQDGIDIAIRVGS-IENENVVARKFLDIRFGVYSAPEYLEGHEPLH 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S Q++ +H  +     +P     + ++    R    P    L VN YL    +   G+GI
Sbjct: 182 SPQDIYRHAGVVHALSLP-----WRFIQGHQRLDIMP-AGKLTVNDYLLAAHFIRQGAGI 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +LP ++    P L++++ D   P+  +   Y +       +++F  ++ 
Sbjct: 236 GMLPTFVGDQTPELIKLLPDWEMPTVPLSVIYYKNRGTVPTIRSFTQYLL 285


>gi|307725551|ref|YP_003908764.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586076|gb|ADN59473.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 309

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 121/296 (40%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D+  LR+F  + R  SF  AA +L  + S++S  +  LE  +G KL  R +R ++ TE
Sbjct: 6   RIDFADLRLFLAIVRCRSFRLAAIELGQTPSAVSHAMRRLEDRLGAKLLNRTSRAVSPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L     E ++++ +     +       G LR+    D    L+   L EF  L P+
Sbjct: 66  AGLDLASRLEEGFNQIGSALESFEAPGTARLGSLRLNVFADAAHLLIAPALPEFARLCPE 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ +++DN+ IDI  +  D  IR    +    +             A+P YLK    P 
Sbjct: 126 VQLTVVVDNRPIDIVAEGYDAGIRYGHHVPEDMIAVPLTGPQRWVMAASPAYLKKHGTPR 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            + EL  HN +    L+      + W   V       R+   + +N   + +  C  G G
Sbjct: 186 HVSELADHNCL---QLLLGDNSSYRWEVNVAGKKSPIRVPGSITINDTATTISACKAGMG 242

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA L +  + D      L  ++++       ++  Y     N   L +  N I  +
Sbjct: 243 IAYLLEARIADELARRSLRVVLDEHACAEDPIHMYYSGRRYNHPALLSLINIIRKQ 298


>gi|103486199|ref|YP_615760.1| LysR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976276|gb|ABF52427.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis
           RB2256]
          Length = 293

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 10/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +DW+ L+ F  VA +GS   AA+ + +SQ++++R+I+ LE   G+ LF R   G  LT  
Sbjct: 2   YDWNDLKAFLAVAETGSTLAAAQAMRVSQTTVARRIAALEAATGVTLFERRQAGYALTPV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +      V    +         S    G + +     +   +L   L++    +P I
Sbjct: 62  GEAMLASAVAVRDAADRFGEAASARSRDAGGTVSLTVMEIIAVTILPPILRDLRAEHPAI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL   ++  D++   AD AIR  K    + L+ R++       Y +  Y      P +
Sbjct: 122 HIQLDTSDEARDLAAGAADIAIRSSKQPSGAGLVGRRIADNAWTVYCSCDYADRHGVPHT 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL KH  I  G  + +    +       R  G      +Q ++   ++     G G++
Sbjct: 182 REELAKHPFIGGGGGVWEPYRAW------LRQYGLEESVVMQYDTATGLLSGVRAGMGLS 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK----ARD 296
           +LP Y+    P+L+R +      +  ++    E L++  +++   +F+  +    ARD
Sbjct: 236 VLPAYLADREPDLIRCLPPRSDDTTGLWLLTHERLRHVPRVRLVLDFLARELTRLARD 293


>gi|299531969|ref|ZP_07045369.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298720144|gb|EFI61101.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 295

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 125/297 (42%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++ VF  V   GSF+ A  +L LS S++S+ I+ +E  +G++LF R A  + LT+
Sbjct: 1   MDQFGEMTVFLRVIEEGSFSGAGRRLELSPSAVSKLIARMEARLGVRLFERIAGAIRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G      +  V   +E  +  ++ +  + SG +RI T +   + L+   L   L  +P 
Sbjct: 61  EGEHFRIASQRVVQAMEQAEACVRVADAEISGTVRIHTALTTAKYLVAPRLHLLLDRHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +  +L  +  D      D AI   +P +  +LI R L+       AAP YL+    P 
Sbjct: 121 LHLDFVLGTERGDFVRQGIDVAIHSGRPTE-QTLIGRPLMLRPWVIAAAPQYLQRFGHPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  + F          F+    +        I     N    +    +LG G+
Sbjct: 180 QPEDLLQHRCLNFTIRTQWNRWTFHEEGGLKTIDIPSHIGA---NQGELLRSLALLGHGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLK 293
             L  + +  +     LV ++      S     Y  YP       +++A  +F+  +
Sbjct: 237 VRLAHFHIAADLERGTLVPLLPQFQERSEDDRFYLLYPRGRSLAPRVRAVLDFLAGE 293


>gi|167585318|ref|ZP_02377706.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 314

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 130/306 (42%), Gaps = 18/306 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      R F   AR  +F+ AA++L ++  ++S Q+  LE E+G++LF R+ + 
Sbjct: 1   MDLRQLPALNAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEEELGVQLFTRNGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           L LT  G +  +        L     E++ S      +L I+         +   +  F+
Sbjct: 61  LCLTNAGIRYAQQVRTALMMLVEATREVRASDRDR--RLVISMLSSFAARFVTPRIGSFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P+I ++L   N   D + D  D AIR         L    L+        AP  L  
Sbjct: 119 ERHPEIDVELQSTNTLTDFARDDVDIAIRFGFG-TYPGLYVEPLLDEAFFPACAPT-LNG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P +  +L ++NL+   D + +   D   L T    + EP+   L  +S   ++Q  +
Sbjct: 177 GVLPKTPADLARYNLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSSN-LLQAAI 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIAL+   +         LVR+ +      +  +F  P  L  T +++AFR +I  +
Sbjct: 232 DGQGIALVRRSLAVHELRLGRLVRLFDIDGPSPWNYFFVCPPPLLGTPRVQAFRTWILQE 291

Query: 294 ARDWKF 299
             ++K 
Sbjct: 292 VAEFKL 297


>gi|157960225|ref|YP_001500259.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845225|gb|ABV85724.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 304

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 8/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L++F  VA  GS T AA +L +S +  S  +  LE E+   LF R  R L LT+ 
Sbjct: 1   MQLNDLKLFIRVADCGSLTAAAVELDISTAVASAGLKRLEKELATTLFIRSTRSLRLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           LE     ++ S    SG L +A   D+G+N+L   L EFL+ Y ++
Sbjct: 61  GERYLIHCRRALADLELGHRAIESSQASISGLLSLAVPSDIGRNVLLPWLDEFLVEYSEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L + +   D   D  D A+R   P + SSL+  K+        A+P Y++   EP +
Sbjct: 121 KLRLHIGDNLSDFYHDKIDVALRSGVP-KDSSLVAFKICHSRRVLCASPDYIRQFGEPSA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
           + +L +HN + F   +        W+   D    + R++  +  N      ++ V G G+
Sbjct: 180 LDQLPQHNCLFF---MLDERTHDQWVFNKDGLQHKVRVTANRTCNDADIARRWAVAGQGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                  + D+     LV ++ +       +Y   P     T  +   R+ +  + + 
Sbjct: 237 VFKSWLDLTDDIESGRLVPLLNEYQGEEADLYLVCPGREHVTPVILLLRDMLRERCKQ 294


>gi|270264035|ref|ZP_06192303.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042228|gb|EFA15324.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 297

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 4/292 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   L  F  +A   SF  AA +L ++  ++S  +  LE +VG++L  R  R ++ TE
Sbjct: 3   KLELSGLAAFVAIANERSFRRAAARLGVTPPTLSHTMRELEEQVGLRLLNRTTRNVSPTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L    +  +  ++     L     +P G +RI  +    + +L  +L       P 
Sbjct: 63  AGEHLLARLAPAFTDIDAALESLNTFRDQPRGLVRINASRSAIELVLLPHLGRLARDCPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++++      +I     D  IRL + + +     R    + +   A P Y +   +P 
Sbjct: 123 ITLEVVAQEGFANIVELGFDAGIRLGEDLHNDMRAVRVSPDLRLAIVATPEYFQCHGKPD 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I +  +    +  +      D+ +     S L ++    ++Q  +   GI
Sbjct: 183 TPSDLLNHRCIGWRKISSGELYKWE-FRQGDKVLSVAVNSPLILDDGRLMLQAALENVGI 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A   +    ++     L R++ D        Y  YP    +   L    + +
Sbjct: 242 AFAIENEAAEHLATGRLERVLADWCPSFPGFYLYYPNRRNHPVALTTVIDML 293


>gi|77459007|ref|YP_348513.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383010|gb|ABA74523.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 310

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 128/295 (43%), Gaps = 8/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V  +G F  AA++  LS SS+S  I  LE ++G++L  R  R +T T  G
Sbjct: 5   NLTDVSIFAAVVEAGGFRAAAQKRGLSASSLSDCIRRLEGDLGLRLLNRTTRSVTPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         +++    +L + + +P G L++   + + + LL   L  FL LYP + 
Sbjct: 65  ERLLERLRPALQEIDAAFNDLDDDAQRPVGTLKLNVPVPVARFLLPDLLARFLRLYPGVN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCREPL 181
           +++++DN  +D++    D  +R  + +    +I   +        A AAP YL     P 
Sbjct: 125 VEVVMDNTFVDVNAGGYDAGVRYEESLARD-MIAVPIGPRRQRFVAAAAPCYLAERGTPT 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL  H+L+       K            R +  P    L  +S+   +Q  + G GI
Sbjct: 184 QPEELPGHDLLGHRFESGKVG--VFEFHRDGRVVRIPPQGQLLTSSHDLKIQSAINGLGI 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               +  +++   +  LV I+ED        +  Y         L+AF +F+  +
Sbjct: 242 VYTFEDFLREPLSDGRLVPILEDWWQAFDGPFLYYHGRRHMPSPLRAFVDFLRAE 296


>gi|50121846|ref|YP_051013.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612372|emb|CAG75822.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 297

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 4/285 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G +L
Sbjct: 8   DLTAFVVVAEERSFTKAALRLGMAQSALSQIVRRVEERLGLRLLARTTRSVAPTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H L+T    L E   +PSG LRI T     + +L   +K  L   PDI I++
Sbjct: 68  LAKLGPMLHDLDTVIGSLGELRDRPSGTLRITTVEHAAKTILMPAMKRLLADNPDIHIEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D+  +D+  +  D  IRL   I    +  R    I M   A+P YL     P +  EL
Sbjct: 128 SVDHALVDVVANQFDAGIRLGGEIDKDMIAMRIGPDIPMAIVASPAYLAMRPAPTTPAEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H++I F       +  +  L +  R I       L VN+   ++   + G G+A +  
Sbjct: 188 IDHSIINFRLPTSGTLIGWR-LMSGGREITVRGQGQLVVNTVDLLVDAVLDGHGLACIHL 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             ++   DN +L++++          +  YP    ++        
Sbjct: 247 DQIQRFVDNGSLIQVLSQFTPDMPGYHLYYPNRRHHSSAFSLLVE 291


>gi|154244965|ref|YP_001415923.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159050|gb|ABS66266.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 311

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 140/300 (46%), Gaps = 10/300 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D +D +RVF  +    SFT AA  L L +SS++  + GLE  +G++L  R  R ++ T
Sbjct: 11  TMDRFDAMRVFTRIVERRSFTQAAGDLGLPRSSVTDAVKGLEARLGVRLLQRTTRHVSPT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   ++    +   LE  +     +  KPSG +R+       ++ L   L  FL  YP
Sbjct: 71  LDGEAYYQRCVSLLADLEDAEGAFVGA--KPSGLIRMDVHGTQARHFLLPGLPRFLATYP 128

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ +   ++ +D+  +  DC +R  + + +S LI+R+L T+    +A+P YL+    P
Sbjct: 129 GIRLHMSETHQQLDLIREGFDCILRAGE-LANSPLIRRRLATLERGTFASPGYLRRFGTP 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + +EL+ H ++    L     +    L TV   + +  +   L V    + +    LG 
Sbjct: 188 RTPEELEGHEMVGL--LATDTAKISPLLFTVAGKVRQLTLPASLTVTGPETNVAAACLGI 245

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+  +P Y V        LV ++ D    +  V+  Y    + + +L+   +++  + R+
Sbjct: 246 GLIQVPRYRVAAELAGGALVEVLADFPPAALPVHVLYSHTRQLSPRLRVLIDWMAAQFRE 305


>gi|330501000|ref|YP_004377869.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328915286|gb|AEB56117.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 297

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++  F  V  SGS + AAEQL  + S +SR +S LE ++G+ L  R  R L LT
Sbjct: 1   MKTSLEEMLAFVSVVDSGSISAAAEQLEQTASGVSRALSRLEEKLGVTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E  + ++   S  P+G+LRI T      + +   + EF  LYP
Sbjct: 61  EEGEVFLAQARRILTSVEEAEEQMTLRSQAPAGRLRINTASPFMLHAIVPLIGEFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D++ ID+     D AIR+   +  SSL  R L   +    A+P YL     P
Sbjct: 121 QIELELNSDDRIIDLLERRTDLAIRIGH-LPDSSLHARPLCHSYRRVLASPEYLSRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  ++L  H+LI F +  P  + ++     +           L+ +S  +I++  + G G
Sbjct: 180 LRTEDLPGHSLIGFTE--PDSLNEWPLRHALGERWRI--TPSLRASSGDTILELALAGEG 235

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  L D++    + +  LV ++ +        +   Y        ++  F +F+  + 
Sbjct: 236 MVCLSDFMTDTARASGALVEVLAEQRVEVRQPINAVYYRNTALASRITCFLDFLSERL 293


>gi|330807149|ref|YP_004351611.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375257|gb|AEA66607.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 289

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 123/283 (43%), Gaps = 6/283 (2%)

Query: 15  ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVY 74
                F  A   L + +S +SR+I+ LE  +G++L +R +R  TLTE G   ++    + 
Sbjct: 2   VEHRGFAAAGRALDMPKSKLSRRIAQLEDRLGVRLLHRTSRHCTLTEIGQAYYQRCLAMR 61

Query: 75  HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDID 134
            + E+    ++ +  +P G +RI+    L  + +   L  ++L YP +++ +   N+ +D
Sbjct: 62  VEAESAAEVIERNRSEPQGLVRISCPTALLNSWVGPMLTRYMLKYPRVELFIESTNRRVD 121

Query: 135 ISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           +  +  D A+R+R  P++++ ++ + L         +P YL+    P S  +L+    + 
Sbjct: 122 LIHEGFDIALRVRFPPLENTDMVMKVLSNSTQCLVGSPAYLERLSSPASPADLNGLPSVH 181

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN- 252
           +G    +    +                 +  +  L++    + G GIA LP  +V+++ 
Sbjct: 182 WGAAQREY--QWELFGPDGTRALIRHEPRMVTDDLLALRHAVLAGIGIAHLPTVVVREDI 239

Query: 253 --PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               LV ++         V+  +         ++   +F+  +
Sbjct: 240 AAGRLVELVPGWTPKCGIVHAIFASRRGLLPSVRTLIDFLAEE 282


>gi|311106887|ref|YP_003979740.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761576|gb|ADP17025.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           120 [Achromobacter xylosoxidans A8]
          Length = 302

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 123/290 (42%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V  +GS + AA +  +   ++SR+I  LE ++ ++LF R  RG  LT+ 
Sbjct: 1   MDLNAVEMFVAVVHAGSLSAAAARTGVPLPTLSRRIRELEKQLSVQLFERSVRGTKLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++L+   S     L   +  +  +  +  G LR++             L  F   YP I
Sbjct: 61  GARLYEHASRGIEALMDAKEAVLNAQRQLEGLLRLSLPPSFDIWW--DLLAAFQQRYPGI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +    + +D+ +D  D A+R+   I+  S++ RK++       A+P  L+    P  
Sbjct: 119 RLFVHTTERRVDLIVDGIDVALRVGA-IEHESMVARKILQYRHRLVASPSLLERLGYPAV 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +     +        E   W   +      PR   L  N Y  +    + G  + 
Sbjct: 178 PEDLHRLPCAAWA---RAGYEPPVW--HLGGTAFHPR-PILSTNDYAHLRHRALSGQAVT 231

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LP ++  ++     LV +++    P   +   YP     +  ++A+ +F
Sbjct: 232 ELPLFLAAEDLRAGRLVGVLDGYPLPEQELNLLYPSHRHPSSVVRAYLDF 281


>gi|254284677|ref|ZP_04959644.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|150425462|gb|EDN17238.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
          Length = 307

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 125/298 (41%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 12  MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 72  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 132 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATQEYLAQHAPIG 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   G+
Sbjct: 191 LPQDLAHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGV 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +         L  ++ D   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 245 IRLPCDLANPLLRAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 302


>gi|296161068|ref|ZP_06843879.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295888767|gb|EFG68574.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 326

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 124/284 (43%), Gaps = 7/284 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  +  +GS + AA+QL+ SQ ++SR +  LE  +  +L  R    + LTE G + 
Sbjct: 10  QMSTFIRIVEAGSLSVAAKQLNTSQPTVSRHLRALENHLETQLLVRSTHRMNLTEAGRRY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +  K+   + E++  +   SG +R+     +GQ  L      +L   P+++I+ 
Sbjct: 70  YEYARGLIGKMAEFEEEMRGQTFVSSGTMRVVVPTAIGQEWLIELADRYLKECPEMRIEW 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  ++   +  DC IR  +P + +S + R L  +     AAP  ++   E  + ++L
Sbjct: 130 RLSDASVNFEEEAIDCVIRAGEP-EKTSYVARPLGELRRVLAAAPSIVQRYGEIRNPEDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +   I         +   +     DR           ++          LG G  L+ +
Sbjct: 189 AELPWIAMTSYYTDKIALSD---RCDRIKCVEISPRFALDHVFGTRTAARLGIGAVLISE 245

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +IV+    + +LVR++ D    S  +Y  YP+A     KL+ F 
Sbjct: 246 WIVRADFADRSLVRLLPDWRGTSLPLYAIYPKAKFYPAKLRQFV 289


>gi|253995382|ref|YP_003047446.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253982061|gb|ACT46919.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8]
          Length = 304

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 134/297 (45%), Gaps = 10/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  V   GSF  A+ ++ + +S+ISR+I  LE  +G +L  R  R   +TE G
Sbjct: 3   DINDYILFAEVVNGGSFAAASRRVRIPKSTISRRIGLLEERLGARLIERSTRRFRVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   +E     + ES  +P G +R +  + L +  L      FLL +P  +
Sbjct: 63  QSFYERCKVIMLDVEQADSIVSESLSEPKGLVRCSCPLGLYET-LSPIFSSFLLNFPHAR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL+  +  +++  D  D AIR+R  +    SL+ R L        A+P+ L N  +   
Sbjct: 122 LQLVAGDNPVNLIEDRIDVAIRIRTVLDTDGSLVMRTLGHSERVLVASPN-LANGIDQSR 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  L +   I+  D        F+  +   + I  EP++SC+    + ++ +  + G GI
Sbjct: 181 LDNLSELPTISTSDQNSTIEWQFHHASLGTKSIRHEPKLSCI---DFATVREAAIAGIGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ALLPD+    +     LVR+  +  T    ++  +         ++AF + +  + +
Sbjct: 238 ALLPDHTCSHDLQNGRLVRVFPEWKTTMGILHIVFTTRRGLPPVVRAFIDHLATQVK 294


>gi|299069993|emb|CBJ41279.1| Putative HTH-type transcriptional activator aaeR [Ralstonia
           solanacearum CMR15]
          Length = 301

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 7/295 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D   ++ +F  V   G+F  AA +L L+ SSIS+ +  LETE+G+ L +R  R L+LT
Sbjct: 3   NMDVLKRMAIFARVVELGAFNRAARELGLTTSSISQHVRALETELGVTLLHRSTRKLSLT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +   + V H     Q ++ E   +P+G+LRI    +L    L   L++F+  +P
Sbjct: 63  EAGRVYYEECANVVHAAARGQQKVAELRDEPAGELRITAPSELAHQHLVPALRDFIAAHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+  L ++ ID+     D A+R+ + +Q SSL+ R++        AAP YL+    P
Sbjct: 123 RLAIRFELGDEKIDLVEHRVDLAVRIGE-LQDSSLVARRIAWFDELICAAPEYLERVAVP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + Q L   + + F  L                         L  N   ++    + G G
Sbjct: 182 ATPQGLADLDWLIFTPLGEPAF--VQLRDGQGHEARLRVHGRLATNQAQTLKALTLDGHG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +A L    +        LV ++ +     F VY   P       K+      +  
Sbjct: 240 VARLLKVDIGAELAQGRLVPLLPEWRLAGFGVYAITPRRDAQPLKVTRCIEHLRA 294


>gi|156935448|ref|YP_001439364.1| hypothetical protein ESA_03307 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533702|gb|ABU78528.1| hypothetical protein ESA_03307 [Cronobacter sakazakii ATCC BAA-894]
          Length = 298

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V  SGSF+ AA +L  + SS+SR +S LE E+G KL  R  R L L+E GS +
Sbjct: 8   DIAVFVQVVESGSFSAAARKLGSTPSSVSRSVSRLERELGCKLLVRTTRKLRLSEAGSGV 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +             +S  P G++ +     +G+ ++   ++EFL  YP + I L
Sbjct: 68  FQRAVSMMDAARDVMARGGTASQSPQGRVTLGVPKAVGRFVIHPLMEEFLTRYPQVDICL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ +D+  D  D A+R+     S  L  + L+ I     A P YL     P + Q L
Sbjct: 128 RLEDRYMDLIDDEVDLALRITDS-PSPGLYGKPLMPIEHLLCATPDYLARHGTPETPQAL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ I+ G+        F       + +          N     +       GI  LP 
Sbjct: 187 RHHSCISLGETAADARWKFR---RDGKSVVVQTHGRYAANHTGVRLDAVKRHLGIGSLPR 243

Query: 247 YIVKD---NPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +   D      +V+++ +     + S  ++  +  +     K++A  +++  K 
Sbjct: 244 FTASDALAAGEIVQVLPEWEFISSYSGRLWLLWSTSRHMPAKIRALIDYLTEKL 297


>gi|167620019|ref|ZP_02388650.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 306

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 11/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R   G++LTE G + +
Sbjct: 11  LHVFVSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTHGVSLTEAGQRYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T++ Y ++   +  L ++  +P G LRI+        +    L EF   YP + +++ 
Sbjct: 71  DATAQPYRQVVDARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFRRYPKVSVEIR 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     P  + +L 
Sbjct: 131 YEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGTPAKVADLA 190

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F    PK      W L    R +              +++     G+GIA +  
Sbjct: 191 RHMCIRF--RFPKSGRLHKWPLRDGRRDVDLDVAGRFVSTDTGAVIDAARAGAGIAFV-- 246

Query: 247 YI---VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++   ++D+     L  ++         ++  Y        KL+AF   +   A
Sbjct: 247 FMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLREHA 300


>gi|146337241|ref|YP_001202289.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146190047|emb|CAL74039.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 314

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 120/290 (41%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F  VAR+G+F  AA +  ++ SS+S+++  LE  +G++L  R  R L LT+ G
Sbjct: 5   DLRDLQAFVAVARTGNFRRAAREQGVAVSSLSQRLKELEQRLGLRLLNRTTRSLGLTQAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L         ++E    +++      +G+LRI         +L   +  FL  YP ++
Sbjct: 65  EALLARLEPALLEIEAAIDQVRGQQQVAAGRLRINAPPPAVDLVLAPMVAPFLAAYPRVE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  ++  +DI     D  +R  + +    +             A+P +++    P   
Sbjct: 125 LEIAAESGFVDIVQAGFDAGVRYGEHLAQDMIAVPLGEPQRYAIVASPEHVERHGRPSHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  I    L    M D+ +          P    + V   L+    C  G G  +
Sbjct: 185 RDLLQHACIR-ARLSSGAMLDWEFEKDGQVIRIAPPPKLIAVQLGLAFRAAC-DGVGYWM 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +  V+    +  LV +++D   P    Y  YP   +    L AF  F+
Sbjct: 243 AFEGHVRQALADGRLVSVLDDWCPPFRGPYLYYPSRRQPPPALAAFVAFV 292


>gi|149374852|ref|ZP_01892625.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
 gi|149360741|gb|EDM49192.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
          Length = 309

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 125/296 (42%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            ++D L V   VA   + T AA  L +  ++ S  +  +E E+G++LF R  R L L+  
Sbjct: 1   MNFDDLTVVLKVAEFRNITAAATSLDMRAATASAAVKRVEHELGVELFVRSTRQLRLSAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K      +    ++  +  ++  +   +G++R++ + DLG+N +   + + +  +P +
Sbjct: 61  GEKYLPQCRQALTLMDEARQNIRFGTETVAGEIRLSVSSDLGRNRVVPWIDQLMTSHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++ + + ++D   D  D A+R   P   ++L   K+  +     A P YL     P+ 
Sbjct: 121 SLRVQITDSNVDFFRDSVDMALRYGSP-SDANLYGFKICDVPRLLCATPDYLNQQGTPIH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  HN + +   +     D                     N    + ++C+ G G+A
Sbjct: 180 PHDLAGHNGLFY--QLQDIPYDLWTFKRDGEEYRVKMKGNRASNDGDLVRRWCIAGHGMA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +     + D+     ++ +M D   P   ++   P     T  ++  R+ +  + +
Sbjct: 238 VKSCLDISDDLLSGRVMNVMPDYTPPVSELWLICPTRQSITPAMRLLRDHLKQQCQ 293


>gi|186473865|ref|YP_001861207.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196197|gb|ACC74161.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 332

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 126/295 (42%), Gaps = 12/295 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V  +GSFT AA+ L+ +  ++SR +S LE  +  +L  R  R L LT 
Sbjct: 1   MDTLQNMRVFVRVVEAGSFTGAAQSLNTTTGAMSRAVSELEAHLRTRLLNRSTRRLALTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +    +   ++  + E   +  +P+G LR+ +   +GQ+ +   +  +  LYP+
Sbjct: 61  AGERYLKRCQLILADIDNAEEEASGAHERPAGVLRMHSFASIGQHYVLPAISRYRALYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L L  +  D+    AD A+     + +S L+   L T      A+P Y+     P 
Sbjct: 121 VAVELTLSQQLPDLFEGSADVAVVGASTLPNSDLVSLLLGTTFSILCASPAYIHAHDAPK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
                          L         W  T++ P G   ++    +QVN   S++     G
Sbjct: 181 KP---TDLLHHDCLLLKTPAFPTSEW--TLEGPNGNEVLNVNGPVQVNIAESLIVAIREG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI +LP Y   D     +LVR++ +       VY  YP       K + +  F+
Sbjct: 236 MGIGILPLYAAIDGLRTGSLVRVLPEYTLQKMNVYALYPSRKFIDAKTRTWVEFL 290


>gi|307300792|ref|ZP_07580567.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306904326|gb|EFN34911.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 299

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 126/296 (42%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF      GSF  AAE L LS   + + +  LE  +G++L  R  R  +LTE
Sbjct: 1   MDRLTSMAVFVKAVDLGSFAAAAEALGLSGPMVGKHVRSLEDRLGVQLINRTTRRQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  + +       +   +P GKLR+   +  G++ +   L E    YP 
Sbjct: 61  FGYVYYERCRVVLAEAQAADALASDQLSEPRGKLRVTMPVHFGRHCVTPVLLELARKYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L  +++ ID++ D  D +IR       + LI R++    M   A+P YL++   P 
Sbjct: 121 LELDLSFNDRIIDLAEDGFDLSIRTGVLEDRAGLIARRVARQPMIVCASPSYLESHGCPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L +H+ + +    P     F         +        +++   +I      G G+
Sbjct: 181 APEDLAQHSAVVYRRSGPVSPWLFPRPGQSSSEVT--PFHRFRLDDLDAIADAAARGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LP ++V+   +   LVR++ +     +  +  + +      K++   + +  + 
Sbjct: 239 AWLPYWLVRGRIEAGTLVRLLPEQPPFLYDCHAVWLQTPHLPLKVRVAVDALAAQL 294


>gi|241204988|ref|YP_002976084.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858878|gb|ACS56545.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 297

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 128/289 (44%), Gaps = 6/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR+ SFT AA +L +SQS++S  I GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLIAFLAVARAQSFTKAAGKLGVSQSALSHTIRGLEERLGLRLLTRTTRSVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L         ++E+    L     KP+G +RI         +L   L++ L  YPDI ++
Sbjct: 67  LLVSIGPRLDEIESELAALSAFREKPAGTIRINAGEHAADAVLWPALEKLLPDYPDINVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I+D    DI  +  D  +RL + +    +  R    + M    +P Y     +PL+ QE
Sbjct: 127 IIVDYGLTDIVAERYDAGVRLGEQVAKDMIAVRIGPDMRMAVVGSPAYFGTRPKPLTPQE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN I     +P     + W    D      R+   L  N+    +   + G G+A +
Sbjct: 187 LTDHNCINL--RLPTYGSVYAWEFEKDGRELRVRVEGQLVFNNIALRLNAVLAGLGLAYM 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+ +V     +  LVR++ED   P    +  YP     +       + +
Sbjct: 245 PENLVDAHLADGRLVRVLEDWCLPFSGYHLYYPSRRHTSPAFALLVDAL 293


>gi|251791386|ref|YP_003006107.1| putative DNA-binding transcriptional regulator [Dickeya zeae
           Ech1591]
 gi|247540007|gb|ACT08628.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 314

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 122/291 (41%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   GSFT AA QL +S S++S+ ++ LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKSMSVFARVVEFGSFTAAARQLAMSVSAVSQTVTRLEDELQVKLLNRSTRSIGLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     + H+      +L   +  P+G LRI ++  + QN+L     + L  YP + +
Sbjct: 64  IYYHGCRRMLHEAHEVHEQLYAFNNTPTGTLRIGSSSTMAQNVLATMTTDMLKEYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL   +L ++ M   AA  YL     P    
Sbjct: 124 NLVCGIPAPDLIADGLDIVIRVGA-LQDSSLYSTRLGSMPMVVCAAKSYLAQHSAPEKPG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N  ++++++   G+GIA +
Sbjct: 183 DVSNASWLEYSVRPDS---EFELIAPEGITTRLTPQGRFVTNDPVTLIRWLKNGAGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P   V +      +  +     +    VY  Y        K++   N++  
Sbjct: 240 PLMWVFEEIKRGEIEILFSRYHSDPRPVYALYTRRDNLPLKVQVCINYLTE 290


>gi|170701705|ref|ZP_02892645.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|172061843|ref|YP_001809495.1| DNA-binding transcriptional activator GcvA [Burkholderia ambifaria
           MC40-6]
 gi|170133398|gb|EDT01786.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|171994360|gb|ACB65279.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 323

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 129/306 (42%), Gaps = 18/306 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      R F   AR  +F+ AA++L ++  ++S Q+  LE E+G++LF R+ + 
Sbjct: 1   MDLRQLPALNAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEEELGVQLFARNGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           L LT  G +  +        L     E++ S      +L ++         +   +  F+
Sbjct: 61  LCLTGAGMRYAQQVRTALMMLADATREVRASDRDR--RLVVSMLSSFAARFVTPRIGTFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P+I ++L   N   D + D  D AIR         L    L         AP  L  
Sbjct: 119 ERHPEIDVELQSTNNLTDFARDDVDLAIRFGFG-NYPGLHVEPLFDEVFFPACAPT-LNG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L  +NL+   D + +   D   L T    + EP+   L  +S   ++   +
Sbjct: 177 GKLPQTPADLVHYNLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSSNLLL-AAI 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIAL+   +      +  LVR+ +      +  +F  P  L N  +++AFR ++F +
Sbjct: 232 EGQGIALVRRSLAVHDLLDGRLVRLFDIDGASPWHYFFVCPPPLLNAPRVQAFRAWMFEE 291

Query: 294 ARDWKF 299
              +K 
Sbjct: 292 VAQFKL 297


>gi|330505601|ref|YP_004382470.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328919887|gb|AEB60718.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 301

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 127/294 (43%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L +R +R L+LTE G
Sbjct: 3   DLNSLYYFTQVVEHGGFAAAGRALDMPKSKLSRRIAELEERLGVRLLHRTSRHLSLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    +  + E     ++ +  +P G +R+A    L  + +   L  ++L YP ++
Sbjct: 63  QAYYQRCLAMRVEAEGAAEVIERNRAEPRGLVRLACPTTLLNSWVGPMLTRYMLKYPLVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D A+R+R  P++++ ++ + L          P+ L    +   
Sbjct: 123 LYIESTNRRVDLLHEGFDVALRVRFPPLENTDMVMKVLAASTQCLVGHPNLLAALPKDFP 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L     + +G         +  L   D  +       +  +   ++    + G GI 
Sbjct: 183 PEQLGSLPSLHWGGAQRDY--QWELLGPDDGKLVIAHRPRMITDDLRALRDGALAGVGIV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP   V+D+    +LV ++         V+  +P        ++   +F+  +
Sbjct: 241 HLPHVAVRDDLAAGSLVEMLPGWAPKCGIVHAIFPSRRGLLPSVRTLIDFLAEE 294


>gi|262378573|ref|ZP_06071730.1| LysR family transcriptional regulator [Acinetobacter radioresistens
           SH164]
 gi|262299858|gb|EEY87770.1| LysR family transcriptional regulator [Acinetobacter radioresistens
           SH164]
          Length = 309

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 130/292 (44%), Gaps = 7/292 (2%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMEVILLHRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  ++ + E   +  G LRIATT ++G   L   L  ++  +  
Sbjct: 62  AGQAFFHSCREMLAAAERGKVRINELRDELVGDLRIATTPEIGAMHLVPALSHWISAHRG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +    +NK ID+     D A+R+   I+ S+L    L  +     A+P YL       
Sbjct: 122 LSVHFEAENKYIDLIEGRIDIAVRMSSKIEDSNLTAVPLARVEQILVASPSYLNQSAPIS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H+LI    +       F    T +    E R S L  N+ L     C  G G+
Sbjct: 182 RPEDLKNHDLIPINVMNNYQQFSFQHGVTSEVVDLEMR-SRLYSNNVLVAKSLCQHGHGL 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +    V+ +    +LV ++ +   P+FT+Y       +   K+    + +
Sbjct: 241 ARILYLDVQKDLINGSLVEVLPEWKLPAFTLYAVISRREQQPMKIHRCLDAL 292


>gi|332288874|ref|YP_004419726.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
 gi|330431770|gb|AEC16829.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
          Length = 288

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 23/301 (7%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +   GSF+ AAEQL+LS S +S+ +S LE  +  KL  R +R L+LTE
Sbjct: 1   MDTLQSMKVFRQIVEKGSFSKAAEQLNLSTSMVSKHLSNLEHYLQAKLLNRTSRRLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++        LE  +    + ++ P G L+I   +          L E+   Y  
Sbjct: 61  VGADYYQRCVAALDDLEEAKQIASQGTIHPQGTLKITLPVWFATRRFAEFLAEYQHRYSQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +QL LDN   D+     D A+++     + +LI + L  +  H  A+P Y++      
Sbjct: 121 VNLQLSLDNHHTDLVGQGFDLALKVTAH-PAENLIVKPLAGMPFHWVASPKYIQQFG--- 176

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L++ +      LIP      +             +  +  N+ L + Q  +   GI
Sbjct: 177 ---QLNEQSWAQHKGLIPTYTHVEHHF-----------VDIISSNNTLMLYQLALAAQGI 222

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A LP ++ +D+    +L +I+      + T+Y  Y      + K+++F +F+  K  ++ 
Sbjct: 223 AYLPSFLCEDDLQRGDL-QIVPHPANRNHTLYAAYMNREFMSAKVRSFIDFMAEKFSNYP 281

Query: 299 F 299
            
Sbjct: 282 L 282


>gi|146305108|ref|YP_001185573.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145573309|gb|ABP82841.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 302

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    +++  F  V  SGS + AAEQL  + S +SR +  LE ++ + L  R  R L LT
Sbjct: 1   MKISLEEMLAFVCVVDSGSISAAAEQLEQTASGVSRALGRLEEKLAVTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E  + ++      P+G+LRI T      +++   + +F  LYP
Sbjct: 61  EEGEVFLVQARRILDSVEEAEEQMAVRRQAPAGRLRINTASPFMLHVIVPLIGDFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  D++ ID+     D AIR+   +  SSL  R L        A+P YL    +P
Sbjct: 121 QIELELNSDDRIIDLLERRTDLAIRIGH-LPDSSLHARPLCHSRRRVLASPDYLARHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +EL  H+LI F +  P  + ++     +           L V+S  ++ +  + G G
Sbjct: 180 MRTEELAGHSLIGFTE--PDSLNEWPLRHALGERWRI--TPSLHVSSGDTVRELALAGQG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  L D++    + +  LV ++ +        +   Y        ++  F +F+  + 
Sbjct: 236 LVCLSDFMTDVDRASGRLVEVLAEQRVEVRQPINAVYYRNTALASRITCFLDFLSERL 293


>gi|16263460|ref|NP_436253.1| putative transcriptional activator [Sinorhizobium meliloti 1021]
 gi|14524153|gb|AAK65665.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 383

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 119/248 (47%), Gaps = 3/248 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +RVF  VA+  SFT AA QL ++  +++R +S LE  +G++L  R  R ++LT  G
Sbjct: 3   DLSDIRVFLAVAQQRSFTAAARQLSMTPPTVTRSVSALEQSLGVQLLLRTTRQVSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +        +  + +  + +L+E     +G +RI   + LGQ LL   +  F   +P + 
Sbjct: 63  AVYAARVEPLIRQFDQVRDDLREEQGDVAGLIRINAPLSLGQQLLPDIVSGFRAEHPQVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ IDI  +  D A+R+ +  +  S I RK+  +     A+P YL     P + 
Sbjct: 123 VSLSLTDRFIDIVSERFDLALRVSEAPRDRSTIWRKVCRVRRILVASPGYLAIFGTPETP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I + +   + + +   L    R         L  N+   I +    G G+AL
Sbjct: 183 DDLSRHGCIAYDE---EAISETWELTNGGRTRKALAGKVLAANNGELIAKLVEDGQGLAL 239

Query: 244 LPDYIVKD 251
           LP +IV D
Sbjct: 240 LPHFIVGD 247


>gi|254234263|ref|ZP_04927586.1| hypothetical protein PACG_00100 [Pseudomonas aeruginosa C3719]
 gi|126166194|gb|EAZ51705.1| hypothetical protein PACG_00100 [Pseudomonas aeruginosa C3719]
          Length = 303

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 119/295 (40%), Gaps = 10/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L VF  + R  SF H+A++L +S S++S  +  LE  +G+KL  R +R +  T+ G
Sbjct: 8   ELADLNVFMTIVRRRSFRHSAQELGVSTSALSHSMRNLEARLGVKLLNRTSRSVVPTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S L     + +  +     EL      P G+LR+    D  + LL   L+ F   YPD+Q
Sbjct: 68  SALAAKLEDGFQVIGEALGELDAYRTSPVGRLRLNVPRDASRLLLGPVLRRFTEAYPDLQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L ++++ +DI  D  D  IR    +    +       +     A+P YL     P   
Sbjct: 128 LELSVEDRMVDIVADGYDAGIRYGGTVPQDMVAVPLTGELRWVVAASPDYLARHGVPQRP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I          +    L   +R +         VN   + +   + G G+A 
Sbjct: 188 DDLLRHACIRMRLGDNSFYKWE--LGDGERMVEVDVPGPFSVNESNTAVAAALDGIGLAY 245

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR-----NFI 290
             +  + +   +  L  ++ D  +        YP   +    L+        +++
Sbjct: 246 CLEVGIAEELRSGRLQLVLPDWTSMGAPFCLYYPSRRQPQPGLRQLMEIIRGDWL 300


>gi|254246457|ref|ZP_04939778.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124871233|gb|EAY62949.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 305

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G 
Sbjct: 9   LNALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +  ++   SG L ++ T       L   L +F    PD+ +
Sbjct: 69  DYLPPVRNAFRQIADASQRVSGAAD--SGVLTVSVTPFFASAWLVPRLAQFRQACPDVDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  +   D + D  D AIR     +   L   +L+T+ + A A+P  +     P +  
Sbjct: 127 QVLTSHALADFARDGVDVAIRHGLG-RYIGLCSERLLTVEIVALASPDLVARLGMPATPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL     +   D   K    +     +D   G PR      +    ++Q  V G G  LL
Sbjct: 186 ELVGWPQLH--DAERKGWHIWFGAQRID-DFGPPRGPAF--DDSGLLLQAIVAGQGAGLL 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V+    +  LV++ +      F  Y  YP       K+ AFR +I   A+
Sbjct: 241 PAAMVRGELASGRLVQLADVAWLDDFAYYLVYPPHHAERPKVAAFRRWILDAAQ 294


>gi|73537956|ref|YP_298323.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72121293|gb|AAZ63479.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 303

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 137/303 (45%), Gaps = 13/303 (4%)

Query: 1   MSFDWDKLRV-----FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L++     F + A  GSFT AA    ++ +++SR +  LE  +G +LF R  R
Sbjct: 1   MKRQFDDLQLGSIELFCLAAELGSFTAAAVAASVTPAAVSRTVQRLEERLGARLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT++G      +     +L   + ++      P+G+LRI+         +   L EF
Sbjct: 61  QIRLTDEGRVYFEQSRAALAQLVDAERQISGQQAAPAGRLRISLPTPYAHYRVLPVLPEF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
             LYP+++I + + N+++D + D  D ++R R P   S+LI RKL    +   A P YL+
Sbjct: 121 RSLYPEVEIDVHISNRNVDFADDTYDLSVRGRAP-DDSNLIARKLEDAELVVVATPEYLR 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI--MQ 233
              +P S  +L +H  I F    P       W   V+    +   +     S   +    
Sbjct: 180 RAGKPESPDDLPRHECIQFER--PSSGRRIPWTFQVNDEDTDIMTAGSYAASEDILGGAT 237

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     ++V+    +  LV ++++    +      YP A   T +++AF +F+
Sbjct: 238 LVRAGAGLFQTYRFVVEQDLRDGTLVEVLQEFGGSTRPFVLLYPSARYVTRRVRAFVDFL 297

Query: 291 FLK 293
             K
Sbjct: 298 VDK 300


>gi|251790172|ref|YP_003004893.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538793|gb|ACT07414.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 311

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 124/295 (42%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +     L +F  V  + +F+  A +  +S S +SR I  +E  +G +LFYR+ R +  TE
Sbjct: 6   NISIRTLLIFIDVYETQNFSVVARREGISASQVSRVIHQMEDALGQQLFYRNTRAIIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   LE  + EL E +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGHLFIGYARAMTGSLEEARRELNERTLEPSGMVRINAPVFFGQRHVAPALAGLTERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L +  ID   + AD   R+   +  SS   R       H  A+P Y++    P 
Sbjct: 126 LSIDLTLTDDYIDPHREQADVIFRIG-VLTDSSFHARVFGQQFYHLAASPDYIRRHGIPE 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S +E  +H  + +                 +  +  P    +  N+  +++   + G GI
Sbjct: 185 SPEEFARHKCLVYRGSSGPNRWLLR--RHGEEWVHYPVSPLMSSNNAETLLIAALGGMGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD+++ D   +  LV ++ +    + T    +   YP A      ++A  ++
Sbjct: 243 VLFPDWLIGDRLKSGELVVLLPELDTSIKTEPQHIAAIYPNARHPPLNVRAIIDY 297


>gi|134292594|ref|YP_001116330.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135751|gb|ABO56865.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 313

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA +  F+HAA QL+LS S ++R +  LE+ +G+KL  R  R   LTE G +  
Sbjct: 1   MRVFLKVADTHHFSHAAHQLNLSPSLVTRYVGDLESHLGVKLLQRSTRKTVLTEVGVRYA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +   L   +    + S +  G L +     L    L     E+   +P++ + + 
Sbjct: 61  QGCRSLLADLSEIESRATQESSRIGGDLNVVVLHSLMSPELAALFAEYQSRHPEVSLHIT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L   ++D+     DC I     I S S++ R L    + A A+P YL     P    +L 
Sbjct: 121 LTESEVDLLGGGFDCGIVADTMISSLSVVSRALAHAPLVAVASPGYLLAMTAPQQPADLA 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H ++        C     W+A             + VNS L   Q  + G GIALLP++
Sbjct: 181 AHRIVGVATGAKTC----RWVAPDGTVDALHVEPRVTVNSALMQRQLALAGGGIALLPEF 236

Query: 248 IVKDN---PNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V  +     L R++ D   ++    V   YP      GK++AF +    + R
Sbjct: 237 AVASDLRSGALKRVLADYRLVSDGVAVSLVYPGREFLPGKVRAFVDLAAERFR 289


>gi|62290695|ref|YP_222488.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82700611|ref|YP_415185.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus
           2308]
 gi|254703598|ref|ZP_05165426.1| Transcriptional regulatory protein, LYSR family [Brucella suis bv.
           3 str. 686]
 gi|254708316|ref|ZP_05170144.1| Transcriptional regulatory protein, LYSR family [Brucella
           pinnipedialis M163/99/10]
 gi|254714672|ref|ZP_05176483.1| Transcriptional regulatory protein, LYSR family [Brucella ceti
           M644/93/1]
 gi|256255734|ref|ZP_05461270.1| Transcriptional regulatory protein, LYSR family [Brucella ceti
           B1/94]
 gi|256370237|ref|YP_003107748.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260168031|ref|ZP_05754842.1| Transcriptional regulatory protein, LYSR family [Brucella sp.
           F5/99]
 gi|62196827|gb|AAX75127.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82616712|emb|CAJ11797.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Brucella melitensis biovar Abortus 2308]
 gi|256000400|gb|ACU48799.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
          Length = 301

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 7/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 8   AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 68  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 128 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L++H LI + + +       N        I        +V+S L  ++    G+GI
Sbjct: 187 SPEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGI 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 242 GILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 285


>gi|325518543|gb|EGC98223.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 304

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 134/305 (43%), Gaps = 13/305 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++++S  I  LETE+G+ L  R  R + LT+ G
Sbjct: 3   SLDRFVVFRAVVEAGSFTAAATALNQARAAVSFNIKQLETELGVTLLTRTTRRVELTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R    V  + E    E++      +G LR+ +T++    +L   L  F  L+P ++
Sbjct: 63  ERFYRRCLRVLDEAEGAIDEVRGEHGGMAGILRVTSTVEYAARILAPALHAFAALHPALR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQR--KLVTIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL +      L  R   L T  +    AP          
Sbjct: 123 VRLETHTSQADLVRDRFDVAIRLGRIEHFRDLPYRGVCLGTYDVLPVMAPDLPARVGAPH 182

Query: 180 PLSIQELDKHNLITFGDLIP---KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           P S  +L +   +    L       + D      V RP  +PRI    V++   + +   
Sbjct: 183 PASPDDLARLPQLGHSRLERIAQWTLTDRAGGEHVFRPHAKPRI---VVDNASVLRELAR 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GSG+ALLP ++V D+     LV  +     P   VY  Y        K++A+ +F+  +
Sbjct: 240 AGSGVALLPAWLVHDDLEAGTLVDALPAYRFPQQNVYALYVATRHVPQKVRAWVDFMKAQ 299

Query: 294 ARDWK 298
            +  +
Sbjct: 300 LKHAR 304


>gi|255261546|ref|ZP_05340888.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
 gi|255103881|gb|EET46555.1| transcriptional regulator, LysR family [Thalassiobium sp. R2A62]
          Length = 292

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AA+ L +  +++ R I  LE  +G KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAADVLGVHHATVIRHIDALEIRLGAKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L RV      +       ++      SG L + T+I+    LL   L EF   +P++ 
Sbjct: 63  TDLLRVAQITDDQFSQLMGRIKGQGQGVSGDL-VVTSINALSPLLTPVLTEFQEEHPEVC 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +  ++ + +    A  AIR          + +  + + M   A+  Y++   +P   
Sbjct: 122 VRFLTGDRVLRLEYGEAHVAIRAGTAPDQPDNVVQPFIKLGMRLVASKGYIEKYGKPDEP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H +I   D   +        ATV            +V    +++   V G+GI  
Sbjct: 182 EQLKDHKIIGHNDDNSRAPFHKWMRATVPESAI-----VYRVTDNRAMIDAVVNGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           + D++ +++  LV I+         V+      L  T K++AF   +  +A++W
Sbjct: 237 VSDWVYRNDDTLVEILPSQDDWGAPVWLVTHVDLHRTAKVQAFLTHLKARAKEW 290


>gi|70729715|ref|YP_259454.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344014|gb|AAY91620.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 308

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 131/300 (43%), Gaps = 14/300 (4%)

Query: 1   MSFDW------DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA 54
           M+ D       D++  F  VA  GSF  A   L    + +S++++ +E  +G++L  R  
Sbjct: 1   MNLDVLNNQHSDEIAAFLAVASQGSFVAAGRLLQRHPTIVSKRLAAMEKRLGVRLVERST 60

Query: 55  RGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKE 114
           R + +T+ GSKL          ++  Q +  E + +  G LR+A    +G+  L   L E
Sbjct: 61  RQVRITQVGSKLEERLRAAIDLMDAAQQQAAEGANEVRGTLRLALPAAMGRRWLGPMLPE 120

Query: 115 FLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
           FL  +P + I      + +DI  +  D AIR+ + ++ + LI  +L        A+P Y+
Sbjct: 121 FLRDHPHVSILADYSERLVDIIDEGFDVAIRIGE-LEDNRLIAMQLSDHRRILCASPAYI 179

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
           +    P +  +L +HN + F  L       +      +     P+   L  N   S++  
Sbjct: 180 EKHGMPETPHDLIEHNCLRFSGLA--SFPQWKLYRGSEFQTVLPK-GNLTANDSESLLAA 236

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
               SGI    +++++ +     L+ ++ D    +   VY   P +   +  + AF+ ++
Sbjct: 237 ACADSGILGAGEWLMRHDIAAGKLLHVLPDWQLDTAGGVYLVRPSSKFPSAVVTAFKKWV 296


>gi|325914823|ref|ZP_08177158.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325538914|gb|EGD10575.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 321

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 133/310 (42%), Gaps = 16/310 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     +R F     +GS    A+ L +S +++S+ I+ LE  +G +L +R  R L LT
Sbjct: 1   MNI-IQSIRSFVSTVDAGSIAGGAKVLGVSAAAVSQNIARLEQHLGARLLHRTTRSLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   LE  +  +      P+G+LR+A+T    +++L   L      YP
Sbjct: 60  ERGALYFEQVRQLERDLERARQLVAGPQQAPAGRLRVASTAAFARHVLAPMLPALRQRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L+  ++ +  + +  D ++R+   +    L+ R +  +     AAP YL  C  P
Sbjct: 120 QLEIELLCTDRVVQHAQENIDVSLRIEAQL-DDGLVARCIAQVPFVVCAAPEYLARCGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
               EL  H+ +      P       W    +    +P++   +  +   ++    V G 
Sbjct: 179 THPDELKYHDCLLL--RYPVDGRFLRWNFVRNGVRFQPQLGQAMVSDDVDALATMAVAGG 236

Query: 240 GIALLPDYIVK---DNPNLVRI-MED------VITPSFTVYFCYPEALKNTGKLKAFRNF 289
           GI  L  ++V+    +  L  + + D             ++ C  +    T K++AF   
Sbjct: 237 GITRLAAFVVQPYLQHGKLQALFLPDGSDTMQPAIEPLRLFLCVADRRDFTPKVRAFMAH 296

Query: 290 IFLKA-RDWK 298
           +  +   +W+
Sbjct: 297 LLERLPPEWR 306


>gi|306841612|ref|ZP_07474307.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306288303|gb|EFM59671.1| LysR family transcriptional regulator [Brucella sp. BO2]
          Length = 293

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 135/284 (47%), Gaps = 7/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P +
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L++H LI + + +       N        I        +V+S L  ++    G+GI 
Sbjct: 180 PEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +L  +I + +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 235 ILHSFIARADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 277


>gi|254224678|ref|ZP_04918294.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125622741|gb|EAZ51059.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 307

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 126/298 (42%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA + SFT AA+ L+LS+  +SR +  +E  +  +L +R  R ++LT 
Sbjct: 12  MDRLTAMRSFIEVANTASFTQAADNLNLSRLQVSRHVQEIEDWLKQRLLHRTTRRVSLTA 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +   ++ H+    ++   E S    G +RI+  I L QN+L   ++ F  L+P 
Sbjct: 72  AGEEALQRCEQILHQTMELEMRALEQSGALRGSIRISAPIGLTQNMLLDAVQAFTDLHPQ 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   ++  ++   +  +  D A+R  +     +LI R+L+ + M   A   YL       
Sbjct: 132 VHFDVLASDRFSQLVDERVDIALRFTQQ-PDENLIARRLLEVGMVVCATEEYLAQHAPIG 190

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  HN +                   +          ++ N   ++ +  +   G+
Sbjct: 191 LPQDLAHHNCLVHISGNKWD------FVKNNEQFSVLVNGNIRANDMGTLCRAALNHKGV 244

Query: 242 ALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             LP  +   +     L  ++ D   PS +++  Y      T  ++ F +F+  + ++
Sbjct: 245 IRLPCDLGNPLLQAGQLQALLPDYYLPSSSIWAVYLSRSYQTPLVRQFIDFLAERWQE 302


>gi|52426206|ref|YP_089343.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308258|gb|AAU38758.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 302

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 120/291 (41%), Gaps = 6/291 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  +A+ GS +  A  L +S  ++S+ +  LE  +G+ LF R  R + LTE G +L
Sbjct: 8   QLLIFQAIAKEGSISACARALRISVPAVSKALRQLENRLGVPLFQRSTRKIQLTETGVQL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              T +    L       +  +  P+G +RI  +      +LQ    EF   YP I + +
Sbjct: 68  LEQTVQAVDTLSQAFENAKTLAKTPTGTVRITVSQVAFSLILQPVYAEFRERYPHIVLDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSIQE 185
            ++N  +++  +  D  IR    ++   ++ R+L   I    + +P Y +    P ++ +
Sbjct: 128 SINNATVNLIDEQFDLGIRFGNHLE-EGIVARRLTGEIREGLFISPQYAQKFGTPKTLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H LI +  +          L    +P        L +N     +     G GI  + 
Sbjct: 187 LAHHQLIGYRFITANRFHPLT-LMENGQPHTIEMPMSLILNDSEMAIDAIRQGFGIGRIF 245

Query: 246 DYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     ++   +L+ +++        +Y  Y    +   +++    F+  K
Sbjct: 246 EAQYERLESKIDLLPVLKKHWQTLQPMYLYYQPKSQKVKRVQVLIEFLQEK 296


>gi|254250250|ref|ZP_04943570.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124876751|gb|EAY66741.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 328

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 124/297 (41%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 31  IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 90

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 91  EAALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPMLAQLRRDHP 150

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P Q + L+ R++  I +  YA   YL +   P
Sbjct: 151 GLVIELVPTDRIQDVLKREADIAVRMAPPAQDA-LVARRVGEIEVGLYARDDYLAHHGAP 209

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I  L  H LI F  + P     F   A    P+ +     L+ +S L+ +     G G
Sbjct: 210 ATIDALAHHTLIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYG 264

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I      + K N  LVR++ D +      +    E L+ + + +A  + +    R +
Sbjct: 265 IGFCQSALAKRNARLVRVLPDALGMRLETWVVMHEDLRTSPRCRAVFDALANGLRAY 321


>gi|330815693|ref|YP_004359398.1| Putative LysR-family transcriptional regulator [Burkholderia
           gladioli BSR3]
 gi|327368086|gb|AEA59442.1| Putative LysR-family transcriptional regulator [Burkholderia
           gladioli BSR3]
          Length = 323

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 123/289 (42%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA +L +S + ++R I+ LET +  +L +R  R L+LTE G++  
Sbjct: 7   MRVFVCVAELQSFRQAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGTRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  +  +P G LRI  +  L    L   +  F   YP +++QL 
Sbjct: 67  DGCRALLEEFDHLEASVAHTIREPVGTLRIVVSGSLSPQRLTPLVDGFRRQYPKVRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQS-SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +  ID      D AI   + I+  ++L+   L      A A+P Y++   EP    EL
Sbjct: 127 VADGPIDGLDTAYDAAIIAGRKIEDGAALVSHALAPDPFVAVASPAYIEQRGEPHRPDEL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIALL 244
            +H  +T    +P     F W                   +N    +    + GSGIA+L
Sbjct: 187 ARHAAVT----LPLDSHGFAWRFVDAGRFAHLVTLQPAYTINDAWLVRAAVMAGSGIAIL 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRN 288
           P+  V D      LVR++ D         +   YP       + ++F  
Sbjct: 243 PESFVADAISRGELVRLLADYRIDDTDAQLAVVYPNRQFVPARTRSFVE 291


>gi|91225436|ref|ZP_01260558.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91189799|gb|EAS76072.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 301

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 132/299 (44%), Gaps = 13/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D L +F  VAR  S T A+E+L++  +++SR++  LET +  +LF R A    LT  G
Sbjct: 5   SLDDLLLFVSVARYQSLTQASERLNVPLATLSRKLKRLETNLNCRLFNRSAHHFALTTDG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K +++   +   L      +       SG ++I+  I++ Q  L+  + EF   +P I 
Sbjct: 65  EKYYQLCEPLLLSLNNVTSRIATERQSLSGTIKISAPINMTQMWLKRCVYEFAEQHPKIC 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N+ I++  +  D + RL   I+    I +KL +I     A+  YL+  +     
Sbjct: 125 IDLDVQNEKINLVSNRVDVSFRLGDLIEQD-WIAQKLWSIPFALCASRSYLEQHQPITHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H LIT  +     + +     T D P+          N  L +    + G GIA 
Sbjct: 184 EQLVHHRLITVNNDSQWKLVNQITNETFDHPLK----FQFTSNDVLLVRDAVIHGLGIAW 239

Query: 244 LPDYIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +P Y       D  NL+ ++ +       V+  Y +  K   ++ AF   +     +WK
Sbjct: 240 IPTYYFHELNHDQHNLLPLLPEWQCSGKEVFIMYRDRDKRPARVDAFIEHVL----NWK 294


>gi|293606949|ref|ZP_06689296.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292814681|gb|EFF73815.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 323

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 124/297 (41%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V R+G F  A   L + +S +SR+I+ LE  + ++L  R  R   +TE G
Sbjct: 3   DLNDLYYFVQVVRNGGFAPAGRALDIPKSRLSRRIALLEERLNVRLIQRSTRTFAVTELG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +    +  Q  +  +  +P G +R++    L    L   +  F+   P + 
Sbjct: 63  QEYFDQCLSMLAGADAAQDVIDRTHAEPQGTIRMSAPPALIYYFLGDVVARFMERCPKVN 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   ++ +D+  +  D A+R+R  P++SS L+ + L        A+P   +       
Sbjct: 123 VVLKSFSRSVDVLREGFDLAVRVRFGPLESSDLVMKHLGMSCQSLVASPALARTLPADAE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++   +   +  G    +C    +      + +  P    L  +  L++ Q  + G G+A
Sbjct: 183 VERYAQLPTLALGTEQRECQWRLDGPNGARQNV--PFTPRLVTDDMLALKQATLRGVGVA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +++D+     LV +    +     V+  +P        ++   +F+  + R+
Sbjct: 241 ALPLMMIRDDLDAGTLVPVGAPWVPEPGAVHAVFPSRRGLLPAVRELLDFMAAEYRE 297


>gi|227357851|ref|ZP_03842199.1| LysR-family transcriptional regulator [Proteus mirabilis ATCC
           29906]
 gi|227161961|gb|EEI46979.1| LysR-family transcriptional regulator [Proteus mirabilis ATCC
           29906]
          Length = 306

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 124/292 (42%), Gaps = 12/292 (4%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
            VF  + + GS   AA+ L +S++ ++R ++ +E   G++L +R  R  +LT  G  +++
Sbjct: 8   EVFVTIVKQGSMIKAADYLGMSRAMVTRYLNEMEEWAGVRLLHRTTRKQSLTSVGELVYQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            + ++    E     + + S + SG +RI T   L    L   + EF+ LYP I + L +
Sbjct: 68  QSLQLLEMAERIPANIPKESHQISGLVRITTAQSLANCALSVAITEFIQLYPLIAVDLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +++  +  D A+R+   ++  +LI R L        A   YL     P +  +L  
Sbjct: 128 SNQTVNLIEERIDIALRITNHLE-PNLIARPLAKCLSVVCAHKDYLAKHGIPNTPDDLTY 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  +T+        E     +  D     P    L  N  + ++Q  + G+G++L P   
Sbjct: 187 HQCLTYRFFGSSLWE----FSLGDERYSVPVGGNLSANESVVLLQATLQGAGVSLQPYCS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            K   +   L  ++ D       +Y            ++   +F+     DW
Sbjct: 243 AKPYLERGELEILLADYQPQPMGIYAVLASRQNMPAAVRVLLDFLV----DW 290


>gi|16262653|ref|NP_435446.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|307309117|ref|ZP_07588794.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|14523273|gb|AAK64858.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|306900431|gb|EFN31046.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 299

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 123/298 (41%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D+  LR F + A   +F   A +L ++ ++++R I+ LE E+G++LF R  R ++LT
Sbjct: 1   MN-DYKALRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEAELGVQLFVRTTRQVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+            +E  + E+  +     G+LRI+     G+ +L   L  F   YP
Sbjct: 60  TDGAIFAAQLQPAVKTIEDARREVMNAHKADEGRLRISAPTWFGKAVLPPILSAFKERYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +  ++ L +  ++I  D  D AIR+         I RK+  +     AAP       + 
Sbjct: 120 KMSFEISLSDGLVNIVDDDYDLAIRISSQPSDKFTIWRKIRVVPRILVAAPG--SRFVDM 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               EL   + + +     +     NW L+     I          N+   +      G+
Sbjct: 178 QHPNELTPDDCLAYSGDSRR----ENWVLSDGGSSITISAGRAFSANNGEVLADIAADGA 233

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+A+LP + + ++     LV + +    P   +   YP       ++ +F  F   + 
Sbjct: 234 GVAMLPGFHIFEHLRTGRLVHVFKGWAPPDLWLTLYYPPYQALPPRIASFSKFFEEQV 291


>gi|190574639|ref|YP_001972484.1| putative LysR family regulatory protein [Stenotrophomonas
           maltophilia K279a]
 gi|190012561|emb|CAQ46189.1| putative LysR family regulatory protein [Stenotrophomonas
           maltophilia K279a]
          Length = 322

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 128/294 (43%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F+ A   L + +S +SR+I+ LE  +G++L  R  R  ++TE G
Sbjct: 24  DLNDLFYFAMVVEHGGFSQAGRALAMPKSKLSRRIALLEERLGVRLIQRSTRRFSVTEVG 83

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R    +  + E  +  +  S  +P G +R+A  I +    +   L +FL  +P + 
Sbjct: 84  QDYYRHCKAMLVEAEAAEEAIAMSRAEPRGTIRLACPIAILHARIGTMLADFLAQHPQVT 143

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R  P++ S L+ R L        A+P  L+    P  
Sbjct: 144 VQLDATNRRVDVVGEGVDVAIRVRPPPLEDSDLVVRVLARRVWCTSASPALLQRLGTPQV 203

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +      P     + +    D          L  +  +++    V G G+ 
Sbjct: 204 PADLAMMPTVDLAS--PSQQHVWEYTGPGDVLASVHHRPRLVSDDMIALRTAAVAGVGLL 261

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +LP  ++ D   +  LV ++ + +     V+  +P        ++A  +++  +
Sbjct: 262 MLPRMMISDELASGALVPVLPEWVPKHGIVHAVFPSRRGLLPAVRALIDYLAER 315


>gi|26990279|ref|NP_745704.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985229|gb|AAN69168.1|AE016550_10 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 301

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F     +  F+ AA +L L+ SS++R +  LE  +G  L  R  R ++LTE G++ 
Sbjct: 6   AMKMFVATVDAQGFSAAARRLGLATSSVTRLVDALEASLGATLLNRSTRQVSLTEAGARY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    ++  L+     + +   +P G LR++  ++ G+ ++  +L  FL  +P +++ +
Sbjct: 66  YQRARGIFEALDEADASIADRGEEPVGVLRLSLPVEFGRRVIAPHLGPFLAQHPALELDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  D+     D +IRL  P  +  L+ R+L        A+P YL         QEL
Sbjct: 126 DLSDRLDDLLDGRYDLSIRLGDPSPNDELVCRRLGGFQRWLVASPAYLAGREPLQHPQEL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  + F        +   W  T  +   E  +S  L+  +   + +  + GSGIALL 
Sbjct: 186 LDHACLRF----RYGQKARPWRLTCGQDSLELDVSGPLRSANADMLRETALAGSGIALLA 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNF 289
           D++V+++     L RI  D           +   Y    + + ++ AF +F
Sbjct: 242 DWLVREDVLAGRLQRIFPDWQASPGAANSSINALYMPNHRGSRRVNAFIDF 292


>gi|94310832|ref|YP_584042.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354684|gb|ABF08773.1| transcriptional regulator (LysR family) [Cupriavidus metallidurans
           CH34]
          Length = 324

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 122/293 (41%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  V  +GSFT AA Q+ L+ + +SR +S LE  +  KL  R  R L LT  G 
Sbjct: 10  LHAMTAFLRVVDAGSFTAAAAQMALTTAQVSRLVSELEKRLQAKLLQRTTRRLALTSVGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +   +   +  +  ++V+P G+LR+      G+  +   +  +   YP + +
Sbjct: 70  RYADQCRSILELVAEAESGVGGANVEPDGRLRVRCMAAFGERYVVPLVSMYCARYPKVAV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +        D+  +  D ++ L + +  S+L+ + L   +    AAP YLK    P S++
Sbjct: 130 EYGTSQYAPDLIAEGVDASVYLAQRLSDSNLVAQALGETYGLLCAAPSYLKRRGTPKSVE 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  +   +  P    D+  L    R         L  ++   ++     G GIALL
Sbjct: 190 ELAAHACLRIAN--PSTTPDWT-LTDGTRSFTLDAGGPLVGDNPGVVLHAASSGLGIALL 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +   D+     L  ++    +P+  VY   P       K +A+   +  + 
Sbjct: 247 PIFSAVDHIRNGELRVVLPAWRSPAIGVYLMLPSRKFLEAKTRAWIELLKTEL 299


>gi|83593049|ref|YP_426801.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83575963|gb|ABC22514.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 306

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             ++LR F  VA  G+ +  A +L L QS+I+R +  LE  VG+ L  R  R + LT++G
Sbjct: 7   TLERLRSFVRVAERGNLSAVARELGLGQSTITRHLRELEEAVGVALLSRTTRRVVLTDEG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+ +  + ++   ++    E + +   P+G +R++ T  LG   + G +  F   YPDI+
Sbjct: 67  SRYYADSLQILRLVDQAGEEARAARGAPAGTIRLSCTAALGVLHISGLIFAFQDRYPDIR 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ ID+  +  D A+RL  P+  S L  R L        AAP YL     P + 
Sbjct: 127 VDLGLTDERIDLVREGVDIALRLG-PLTDSGLKLRPLGLSRRVLVAAPAYLAARGRPAAP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ IT  ++    +          +    P    L+V+  L+  +    G G   
Sbjct: 186 GDLAGHDAITMANVAGSDV--LELRGPDGQRHRVPVGGRLRVDQGLAAREAFRAGRGFGP 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              ++V D      L  I+     P+  +            +++   +F+  +
Sbjct: 244 THRWLVDDLVAAGGLEVILPGYTPPAVPLNMLIVPERAAIARVRLLVDFLVER 296


>gi|325918886|ref|ZP_08180962.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325534900|gb|EGD06820.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 300

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 121/299 (40%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     +  F  VAR+G F  AA+    S S+ S  I  LE+ +G++LF R  R + LT
Sbjct: 1   MSNRLGDMDAFVRVARAGGFREAAKSAGGSASNFSDAIKRLESWLGVRLFNRTTRSVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L         +L+  +  +      P+G LR+   I     ++   +  F+  +P
Sbjct: 61  DAGKALLARVEPALIELDGAKDVMSAFRNTPTGTLRLNVPITAATLVMPQIIPPFMAAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI ++++ +   +D+     D  IR  + +Q   ++   +          AAP YL    
Sbjct: 121 DINVEILTEESFVDVVAAGCDAGIRYGERLQQD-MVAIPIGPRVQRSATAAAPKYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCV 236
            P   +EL  H+ I  G      + D+ +    +     PR   L          +Q  +
Sbjct: 180 RPTHPRELVDHDCIR-GRFPSGAIADWEFERHGEVITIVPRGQLLVEIGGGVELAIQSAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GSGI  L +  ++   D+  L  +++    P    Y  YP        L+AF  F+  
Sbjct: 239 AGSGIIYLFEQWLQPHLDSGALEPVLQPWWQPFPGPYLYYPNRNLTPPPLRAFIEFVKA 297


>gi|262196476|ref|YP_003267685.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262079823|gb|ACY15792.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 297

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 139/296 (46%), Gaps = 18/296 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  VA   SF+ AA +L + +S++SR I+ LE ++G  L +R    + L+  G+
Sbjct: 8   YDLLAIFAAVAEESSFSRAAHKLGVGKSTVSRSIARLEEQLGAALIHRSTHKVALSTAGT 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   +     L     +L ES+ +PSG+LR+    D G  +L   L +F L +P++  
Sbjct: 68  ALYERVAPHLAALGQAVGKLPESAAEPSGELRMTVPHDFGAIVLPALLAQFSLRHPEVSF 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            + + N+ ID+  +  D AIR     ++ SSL  R+L  + M  YAAP YL    EP S 
Sbjct: 128 DVRVTNRQIDLVSEGIDLAIRASPQRLKDSSLTARRLGDVLMACYAAPSYLARRGEPRSF 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +  KH    F  L+                + +     ++ + +L +      G+G+  
Sbjct: 188 GD-PKHEWAVFPPLLALA------------QVPKEFRPRVRADDFLLLRALLAEGAGVGA 234

Query: 244 LPDYIVK---DNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP ++         L +++  ++       Y  +P + + + K+ AFR+F   + +
Sbjct: 235 LPVFVAAPYVAEGALQQVLPKELFRGPGGYYLLFPTSAQRSRKVTAFRDFALERLK 290


>gi|170731844|ref|YP_001763791.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169815086|gb|ACA89669.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 305

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G 
Sbjct: 9   LNALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +  ++   SG L ++ T       L   L +F    PD+ +
Sbjct: 69  DYLPPVRNAFRQIADASQRVSGAAD--SGVLTVSVTPFFASAWLVPRLAQFRQACPDVDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  +   D + D  D AIR     +   L   +L+T+ + A A+P  +     P +  
Sbjct: 127 QVLTSHALADFARDGVDVAIRHGLG-RYIGLCSERLLTVEIVALASPELVARLGMPATPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL     +   D   K    +     +D   G PR      +    ++Q  V G G  LL
Sbjct: 186 ELVGWPQLH--DAERKGWHIWFGAQRID-DFGPPRGPAF--DDSGLLLQAIVAGQGAGLL 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V+    +  LV++ +      F  Y  YP       K+ AFR +I   A+
Sbjct: 241 PAAMVRGELASGRLVQLADVAWLDDFAYYLVYPPHHAERPKVAAFRRWILDAAQ 294


>gi|239816224|ref|YP_002945134.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802801|gb|ACS19868.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 314

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 123/292 (42%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S  +AA++L ++  ++S+ I  LE  +GI LF R  RG+ LT+ G 
Sbjct: 8   LNALRAFEATARHLSVKNAADELCVTAGAVSQLIKSLELHLGIALFRRANRGIFLTDAGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +  +    +G L ++TT       L   LK F   +PDI +
Sbjct: 68  AYLPPVRNAFRQISDATRRI--AMPAETGILTVSTTPFFASAWLVPRLKSFHDAHPDIDL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++      D S D  D AIR     +   LI ++++T+ +   A P  ++    P S  
Sbjct: 126 QVVSSTALADFSRDGVDVAIRHGLG-RYPGLISQRVLTVEIVPVATPALVRQLGMPASPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +   +   +     M    W          P       +    +++  + G G  LL
Sbjct: 185 DLTRWPRVNDAERKGWAM----WFEAQGIEDARPARGP-SFDDSGLLLKAVLAGQGAGLL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V D      LV++ E      F  Y  +PE  ++  K+ AFR +I  +
Sbjct: 240 PAALVADEVAEGRLVQLSEAAWLEDFAYYLVHPEDSRHRPKVAAFREWIAAE 291


>gi|78065082|ref|YP_367851.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965827|gb|ABB07207.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 305

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 122/289 (42%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G 
Sbjct: 9   LNALRAFEAAARHLSVKAAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +  ++   SG L ++ T       L   L +F    PD+ +
Sbjct: 69  DYLPPVRNAFRQIADASQRVSGAAD--SGVLTVSVTPFFASAWLVPRLAQFREACPDVDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  +   D S D  D AIR     +   L   +L+T+ + A A+P  +     P +  
Sbjct: 127 QVVTSHALADFSRDGVDVAIRHGLG-RYIGLCSERLLTVEIVALASPELVARLGMPATPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   D   K    +     +D   G PR      +    ++Q  V G G  LL
Sbjct: 186 DLVGWPQLH--DAERKGWHIWFGAQRID-DFGPPRGPAF--DDSGLLLQAIVAGQGAGLL 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V+    +  LV++ +      F  Y  YP       K+ AFR +I
Sbjct: 241 PAAMVRGELASGRLVQLADVAWLDDFAYYLVYPPHHAERPKVAAFRRWI 289


>gi|117921163|ref|YP_870355.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117613495|gb|ABK48949.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 295

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 8/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           ++  D LR F  VARSGSF  AA+ L +  S++SR+I  LET++ ++L  R A  + LT 
Sbjct: 4   NYSLDDLRCFCAVARSGSFKEAAQSLGMPLSTLSRRIRQLETDLQLRLLNRDAHRVILTS 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +    +  ++ +L     +L     +P GK+RI+  I+ G + L+    +FLL YPD
Sbjct: 64  IGEQYFERSVALFDELNNIDEDLHRDKYQPQGKIRISAPINSGTHFLRSIFYDFLLQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ L   N  IDI  +  D A R+  P+   + I R L  IH    + P Y  +     
Sbjct: 124 IQLDLSFSNSLIDIEAEGMDVAFRVGNPVV-ENWIARPLKHIHFILCSHPDY--DISSIT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I    +IP  +         D      +   L+V+  + +      G GI
Sbjct: 181 TPDKLCGHPTIICHPMIPWQLVHKTTGEEFD--YHPNKGVRLEVDELMLLTHAIKTGIGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             +PDY          +  ++ +  + + T+   Y +      +++ F  F+ L
Sbjct: 239 GYVPDYFALPMIAQGEVNHVLPEWSSKARTLSMLYRDRDHLPMRVRLFIEFVKL 292


>gi|76818306|ref|YP_335865.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126457669|ref|YP_001076259.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|76582779|gb|ABA52253.1| LysR-family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126231437|gb|ABN94850.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
          Length = 306

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 132/302 (43%), Gaps = 13/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G
Sbjct: 3   SLDRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++
Sbjct: 63  ERFYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL +  Q   L  R +   T  +   A+P  L       
Sbjct: 123 VRLETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVAR 182

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S + L +   +    L       + D +    V RP  +P    L  ++   +  +  
Sbjct: 183 IDSPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLRAFAQ 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+ALLP+++V+D+     L+  +         VY  YP A     K++A+ +FI   
Sbjct: 240 QGDGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFIKRY 299

Query: 294 AR 295
            R
Sbjct: 300 VR 301


>gi|107027361|ref|YP_624872.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693929|ref|YP_839462.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896735|gb|ABF79899.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651929|gb|ABK12569.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 329

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 116/295 (39%), Gaps = 4/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R F  V ++GSF+  A+Q  ++ + +SR ++ LE    I+L  R  R + LT
Sbjct: 1   MDM-LENMRTFVRVVQAGSFSAVAKQTDVATAQVSRAVASLEAYAQIRLLNRTTRKIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +       +   ++    E + + V+P G+LR+ T   LGQ+ +      +   +P
Sbjct: 60  DSGRRYFERLQSILGDVDQANAEARNALVRPYGRLRVHTMPGLGQSHVTALAVAYRARFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I++    +  ++  +  D ++     +  S+ I     T      A+P YL     P
Sbjct: 120 EVAIEMTYSQRMPNLVEEGYDVSVVTAASLPDSACIAHSCGTSFSVLVASPAYLARHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +H  +          E                 +    N+  ++      G G
Sbjct: 180 SAPADLARHTCLRLDTPAEANDEWLLHGPGGQTASHAVTAAPFHANAPEALSIALRAGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L  Y   D+     LVR++ D       VY  Y        K++ F   + L
Sbjct: 240 IGSLAIYSAIDDLRSGRLVRVLPDYRLTMLDVYAMYASRRFLDAKVRTFVEHLRL 294


>gi|224825339|ref|ZP_03698444.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602260|gb|EEG08438.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 320

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 134/293 (45%), Gaps = 13/293 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR-GLTLT 60
             +WD ++ F  VAR+ + + AA++L +  +++SR+I  LE  +G  LF +    G  LT
Sbjct: 10  RLNWDDIKFFLEVARTHTASSAAKRLGVDYTTVSRRIRALEQALGALLFEKSRSAGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L R    +   L+    E+  +    SG +RI  T   G   +   +  F   YP
Sbjct: 70  VDGQQLLRYAEAMESALQAACEEVSGTGFALSGHVRIGCTEGFGSGFVTPQISRFQDRYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + ++     I++S   AD AI L +P +    +  KL    +  YA P YL      
Sbjct: 130 DITVDILPVPHFINLSRREADIAITLERP-ERGPYVCSKLCDYRLLLYATPDYLARHPPI 188

Query: 181 LSIQELDKHNLITFGDLI---PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
              ++L  H  IT+ D +   PK +   + L     P        L+  S ++  Q  + 
Sbjct: 189 RQREDLAGHRFITYVDDLAFSPKLLYMDDVLPGAKSP--------LRSTSVIAQYQAALQ 240

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G  +A+LP ++V D+P L R++ + +  +   +  Y E L+   ++    +++
Sbjct: 241 GRALAILPCFLVGDDPRLTRVLPEQVAVTRQFWMYYSEDLRKLKRITLAADYL 293


>gi|90418619|ref|ZP_01226530.1| putative transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336699|gb|EAS50404.1| putative transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 340

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 124/295 (42%), Gaps = 8/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LR+F  VA + SF   A  L LS  S +R ++ LE  +G +LF R  R + LT+ G 
Sbjct: 46  LQSLRMFVAVAEAESFAGGARTLGLSGPSATRGVNALEARLGARLFTRTTRQVRLTDVGR 105

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      EV   L+        ++ KP G LRI    + G+  +   L  FL ++P +  
Sbjct: 106 RYLAEVREVLAHLQAADESAAGAAGKPVGHLRITCPQEFGRIYIAPLLTGFLDVFPGMSA 165

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++ ++ +++  +  D A+R+  P+ SS L   ++  +      AP Y      P    
Sbjct: 166 EVLMVDRVVNLVEEGIDVALRIG-PLASSDLAAVRIGQVRRVVCGAPAYFAEHGIPRDPA 224

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+          +   W    +          L V+S  + +     G G+  +
Sbjct: 225 DLARHRLVA----TMPDGQARTWRFGPNGTRIVRVEPRLTVSSVAASIAIVRSGWGLCRV 280

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             Y +    ++  L  ++ D       ++  + E  +   K++AF +F   + R 
Sbjct: 281 LSYQIGPDLEDGTLQTVLADHEPEPLPIHLVHVEGRRAAAKVRAFVDFAADRLRQ 335


>gi|322834757|ref|YP_004214784.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321169958|gb|ADW75657.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 305

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 12/297 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D++ +F  V + GS   AA +LH S  +I+R I+ LE   G +L  R  R L  TE
Sbjct: 1   MDRLDEMAIFVAVLQYGSLAEAARKLHRSPPAITRAIASLEHRFGARLVERTTRSLAPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L      +  + +    +  E   + SG LRI   +  G+  +   + EFL  +PD
Sbjct: 61  AGARLAEKARLLLSQYQNAVEDTAE--TQLSGLLRITAPVQFGRKHVAPLVMEFLAQHPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI+++L+++++D+  +  D A+R+    + S  + RK+  +     A+P YL    EP 
Sbjct: 119 MQIEMMLNDRNLDLIDEGLDLAVRIGHQ-EDSGKVARKVAQVTRVLVASPAYLAQHGEPQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
              EL  H  +    +     +   W    +      R+S  L  N   S +     G G
Sbjct: 178 HPSELASHQTV----MGTLRTQIREWRFGPNEDDLRVRLSPRLLSNDVESQLLAVRSGQG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA L  Y V+D+     +VR+++D       V     +  +   K++ F +F + + 
Sbjct: 234 IARLLSYQVRDDVQAGRMVRLLKDFEPLPLPVQLVAQQVQQMPRKVRTFWDFAYQRL 290


>gi|328725331|ref|XP_003248431.1| PREDICTED: putative transcriptional regulator-like [Acyrthosiphon
           pisum]
          Length = 299

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 125/301 (41%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA  G+FT AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPIFIAVAEEGNFTKAAARLGITRSAVSQGIRRLEDAFGTMLVMRTTRSVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    S     ++    ++  S  KP G LRIA T    + L    +  F +  P
Sbjct: 61  EAGEQLRASLSLPLSGIDAALDDI-ASDNKPRGLLRIAVTSIAEEFLSGPLIASFAVANP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ +++ +++ DI     D  +RL + I+   +             A+P YL     P
Sbjct: 120 LVKLDIVVTDEEFDIVAAGYDAGVRLGEVIEKDMIAVPLTGMQREVVVASPSYLAANGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +EL  H  I +          +       R         +  N    +++  + G G
Sbjct: 180 VHPRELVHHQCIGWRPSPEVAPYRWP-FEEKGRAFDLAVEPQITTNDLRLMLRLALAGGG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I L      +   ++  LV ++ + +      Y  +P+      KL+A  + +    R+W
Sbjct: 239 ITLATQETFRPYIESGQLVSLLNEFLPQFPGFYLYFPQRRNIAPKLRALIDHV----REW 294

Query: 298 K 298
           +
Sbjct: 295 R 295


>gi|70729234|ref|YP_258970.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343533|gb|AAY91139.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 307

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 118/295 (40%), Gaps = 4/295 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F   A  GSF  AA +L L+ +++ + ++ LET VG++LF R  R LTLTE G 
Sbjct: 4   FSSIECFVRSAEVGSFAEAARRLGLTPAAVGKSVAKLETRVGVRLFQRSTRRLTLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 ++    ++     L ++  +P+G L+++     G   +   L  FL  YPDI  
Sbjct: 64  LFLAEVADSLQTIQNAVSTLADAQGRPAGTLKVSMGTVFGGLYIVPMLGAFLRRYPDIHP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+     D AI     +    ++ R+L   H    A+  YL+        +
Sbjct: 124 DWHFDNRQVDLIGQGFDAAIGGGFELP-QGVVARRLSPAHRVLVASADYLRGRAPINGPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     I         +  +               + + ++   +       G G+AL+
Sbjct: 183 DLRHCRGILIRSPQTGRIRTWQMTGRGGLMCPLELKASMTMSDSEAACIAAAQGLGLALV 242

Query: 245 P-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              + V    +  L R++ D           Y E     GK +AF +F+  +  +
Sbjct: 243 SMPFAVNYLRSGALQRVLPDWYVDDGFTSIYYAEHKMLPGKTRAFVDFVIEQFAE 297


>gi|323530265|ref|YP_004232417.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323387267|gb|ADX59357.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 306

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +   V  +GS + AA  L +  +++SR++  LE  +  +L +R  R L+LTE GS
Sbjct: 4   LEAMSILVAVVDAGSLSAAARHLDMPLATVSRKVGELEAHLKTRLLHRTTRKLSLTEAGS 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  ++   +         P G+L +   I  G+  +   + +FL  YP+I I
Sbjct: 64  SYVAACRRILEEIGEAERAATGEYAAPRGELVVTAPIAFGRLHVTPVIADFLAQYPEIDI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L ++ + +  ++AD AIR+ + +  S+L+ +++ T+      +P YL     P    
Sbjct: 124 NLMLTDRVVHLMDEHADVAIRIGQ-LPDSTLVAKQVGTVRRVICGSPAYLDAHGVPERPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            LD H  ITF  L       F    +    +  P  S   VN+  + +   +LG G+  +
Sbjct: 183 ALDTHRCITFEALESMRAWSFG---SGKSEVSVPVRSRFAVNTADAAIAAAILGVGLIRV 239

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y V D      L  ++E   +    V   +        KL+AF +F   + R
Sbjct: 240 LSYQVADAVRANELRVVLEAFESAPLPVNLVHAGQTPLPLKLRAFLDFATPRLR 293


>gi|188534856|ref|YP_001908653.1| DNA-binding transcriptional activator GcvA [Erwinia tasmaniensis
           Et1/99]
 gi|188029898|emb|CAO97782.1| Glycine cleavage system transcriptional activator [Erwinia
           tasmaniensis Et1/99]
          Length = 305

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 125/293 (42%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L+++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELYVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFTAINDATRKLQARSA--KGALTVSMLPSFAIQWLVPRLTSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D AI   +      L   KL   ++    +P  L      ++  
Sbjct: 126 RIQAVDRDEEKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLAGAFPLIAPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H L+   D   +  + +     ++    +        +    ++Q  + G G+AL 
Sbjct: 185 ELVHHTLLH--DASRRDWQSYTRQLGLNTINVQ---HGPIFSHSAMVLQAAIHGQGVALA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + +   +   LV    DV+      Y    ++    GK+ AFR ++  KA
Sbjct: 240 NSVMAQSEIEAGRLVCPFNDVLASKNAFYLVCHDSQAELGKIAAFRQWVLAKA 292


>gi|148559785|ref|YP_001259670.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148371042|gb|ABQ61021.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840]
          Length = 308

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 7/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+  +LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVAHRLVDYTLCLYAHRSYLEENGTPK 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L++H LI + + +       N        I        +V+S L  ++    G+GI
Sbjct: 194 SPEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGI 248

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 249 GILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 292


>gi|86751490|ref|YP_487986.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86574518|gb|ABD09075.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 314

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 117/298 (39%), Gaps = 11/298 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L     +AR GSF  AA  L +S +++S  I  LE  +GI+LF R  R ++LT+ G
Sbjct: 5   SLQDLEAVAAIARRGSFRAAALDLGVSTTALSNAIGKLEASLGIRLFNRTTRSVSLTDTG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +        +       +     PSG LRI       + +L   + EFL  YPD+ 
Sbjct: 65  QVFLKQVGPALQDIRAAVETARSRQATPSGSLRINAFAMAAREILSPLILEFLRRYPDVH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA-APHYLKNCREPLS 182
           + L+ + + +DI  +  D  +R+   +  S +I   L     +A A +P Y     +P  
Sbjct: 125 VDLVTEGRLVDIVAEGFDLGVRVAD-LVPSDMIAVSLGRPQRYAVAGSPRYFAEHGKPQG 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  I     +P             R +       + ++         + G GI 
Sbjct: 184 PSDLVDHRCI--RARLPNGALLRWQFEKDGRAVQIDVDGPITLDEASLARTAALEGIGIG 241

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              +  V    +   L+R++ED   P   +   YP     +  +KAF +     AR W
Sbjct: 242 FFMEQDVVGDIEAGRLIRVLEDWTPPFAGLCLYYPGRRNPSAAMKAFISL----ARAW 295


>gi|241203613|ref|YP_002974709.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857503|gb|ACS55170.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 306

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 131/295 (44%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D++R F  VA  G+ +  A +L + QS+++R ++ LE  VG+ L  R  R +TLT++
Sbjct: 6   LSLDRMRTFVRVAERGNLSMVARELGVGQSTVTRHLNELEEAVGVPLLSRTTRRVTLTDE 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+ +    ++   +E    E +++   P+G +R++ T  LG   +   + +F   +PDI
Sbjct: 66  GSRYYSNCLQILRLVEQAAEEARDARRAPAGAVRLSCTAALGVMHITRLIFDFQDRHPDI 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ ID+  +  D A+RL  P+  S++    L   H     AP YL     P  
Sbjct: 126 RVDLNLTDERIDLVREGVDVALRLG-PLADSAMKLHALGESHRLLVGAPTYLSVHGRPQH 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L ++  +   ++     +     +     +  P    L+V+  L+  +    G GI 
Sbjct: 185 PADLSRYETVVMSNVAGS--DQLVLSSPDGGSLMIPVSGKLRVDHGLAAREAFAAGRGIG 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               ++V    D+  L  ++ D       V            +++   +F+  + 
Sbjct: 243 PAHLWLVHDLLDDGQLEVVLGDYRPLPVPVSLLIVPERAAIARVRLLVDFLVAEV 297


>gi|294625618|ref|ZP_06704242.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665817|ref|ZP_06731087.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600093|gb|EFF44206.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604424|gb|EFF47805.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 300

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 118/292 (40%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ L  F  VA   SF  AA ++ L+ SS+S  IS LE  +G++L +R  R ++LTE G
Sbjct: 5   SFNDLVAFTAVATHRSFRRAAAEVGLAPSSLSHVISALERNLGVRLLHRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+        +++   + L +    P+G +RI     + Q LLQ  +   L  +P + 
Sbjct: 65  ERLYARLVPALQEVDHALLALDDFRGGPTGTVRINAPEVVVQVLLQQVVPHVLARHPALS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+ + + +DI     D  IR  + +    +           A AAP YL     P + 
Sbjct: 125 VDLVSEGRLVDIVAAGCDAGIRFSESVPQDMVAVPFGGPTRFLAVAAPAYLARAGIPPTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H  I     +P             + +       L ++    + +    G GIA 
Sbjct: 185 DALHRHACI--RHRMPSGRLYHWEFERRGQEVVIDVPGRLTLDQIAPMREAAEAGLGIAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +P+Y V        LV ++E        +   YP        L+AF   +  
Sbjct: 243 VPEYAVSAALQRGTLVPVLEAWCPAIPGLVLYYPGHRHLPPGLRAFIEMLKE 294


>gi|290476737|ref|YP_003469648.1| putative transcriptional regulator [Xenorhabdus bovienii SS-2004]
 gi|289176081|emb|CBJ82884.1| putative transcriptional regulator with periplasmic binding protein
           domain (LysR family) [Xenorhabdus bovienii SS-2004]
          Length = 296

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 135/293 (46%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L VF  V+   SFT A  QL +S S+IS+ IS LE ++ ++LF+R  R +TLT +G
Sbjct: 3   NFSVLEVFVRVSEVRSFTAAGNQLGVSSSAISKAISRLEEKLRVRLFHRSTRTVTLTPEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   +    + +++E  + EL +S   PSGKL+++        L      EF   YP+I+
Sbjct: 63  TLFLKRCRRILNEIEAAENELSQSQSVPSGKLKVSMPS--IGVLFMPKFAEFSQQYPEIE 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   +  +D+  +  D  IR  +P   S L+ R L +       +P Y +    P   
Sbjct: 121 LEIDSTDGLVDLIEEGFDAVIRTGEP-ADSRLMARVLGSYKRVIVGSPTYFQKFEIPKKP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
           +EL  H  + +       ++   W    D P  +    + +  N+   ++ +     GI 
Sbjct: 180 EELINHFCMMYRYKSTGKLDI--WPINQDNPTLQLEWPTRMVTNTLDPLVSFAENSLGIT 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +PD  +++      L+ I+ D      T    +P +   + KL+ F NF+  
Sbjct: 238 CIPDLAIREQLKTGKLITILNDFNNDITTCRILWPSSKYLSPKLRVFINFMVE 290


>gi|326387788|ref|ZP_08209394.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207834|gb|EGD58645.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 303

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 130/304 (42%), Gaps = 11/304 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +     +   +AR GSF   A       S +SR+++ +E E+G ++F+R  R ++LTE 
Sbjct: 1   MELHDAGLLIEIARRGSFARVARDRGADPSWVSRKVADIEDELGFRIFHRTTRRVSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+   R    +   L+  +      S  PSG LRI  T+  GQ +L   L  F   YP +
Sbjct: 61  GTIYLREAETIVEALDRARDNALSVSQVPSGTLRITCTVAFGQKILVPLLPRFRRDYPQV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+L +  +D+  D  D AIRL   + S   +  KL        A+P YL+    P +
Sbjct: 121 DLELVLSDASLDLVEDRIDLAIRLGPGV-SGDFVVSKLRDTRYRVCASPDYLRRQGRPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  H+ + F  L+P     + +               +     L++    + G G  
Sbjct: 180 PAALAGHDCLRF--LLPGFRNRWLFRDGAGAVEPVEIKGSVVSTGALALHAMALAGMGPV 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LL  ++V D+     LV +  D    + T    ++  YP       K++A  +F+  +A 
Sbjct: 238 LLASWLVDDDIASGALVDLFPDRQATATTFETAIWMLYPSRSFLPQKVRAMIDFLRAEAE 297

Query: 296 D-WK 298
             W+
Sbjct: 298 TKWR 301


>gi|296158030|ref|ZP_06840863.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295891798|gb|EFG71583.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 301

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 128/299 (42%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   +R    +  SGS   AA +L LS S++++++  LE ++G +L  R AR L  T
Sbjct: 1   MN-DSADIRFLLTLRESGSLIAAARKLGLSPSAVTQRLQQLEKKLGAQLVNRTARRLQFT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+ L    +++  + +    +LQ       G L+I   +  G+  L   +  F    P
Sbjct: 60  EEGTLLCERGAKLVQQFDALFEDLQMRRGGLVGTLKINAPLGFGRRHLAPAIAAFQQQNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI I L L ++ +  + D  D  + + + +  S+L+   +        AAP  +K    P
Sbjct: 120 DIDIALTLSDRPLTETTDRFDIVVHIGE-LPVSNLVGYTIAPNARFVCAAPALIKRTGAP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            S  EL K   I   +      +   W  +  R     R+ S L  N    I Q+   G 
Sbjct: 179 ESPDELSKLPCIVLRE---NNEDVSLWQFSKGRTRRSVRVSSRLSCNDGDVIRQWACEGR 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ L  ++ V D+     L+R++ +   P+  V     +      + + F  ++  + R
Sbjct: 236 GVILRSEWDVADDLAKGKLIRLLPEWRAPAADVIALTHQRTGLPARTRHFMQYLQSRFR 294


>gi|162457236|ref|YP_001619602.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161167818|emb|CAN99123.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 350

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 116/288 (40%), Gaps = 6/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F  +  +GS + AA  L  +Q ++SR++  LE  +G+ L  R    + LTE G
Sbjct: 48  DIGLLQTFVRIVEAGSLSAAATLLGTTQPTVSRRLQALERSLGLPLLQRSTHTMKLTEDG 107

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +   LE    +++    +P G LR+      GQ+ L   L ++L  YP + 
Sbjct: 108 ERCFERAKALLASLEAFASDMRGDRDQPDGTLRVVVPHAFGQHQLVKPLADYLRRYPRVS 167

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +L +   +   D  DCAI +   +   +++  +L  +     AAP  L     P   
Sbjct: 168 VEWLLHDGQPNFIADGIDCAILVGA-VADPAVVAIRLTEVPRIVAAAPSVLGRAARPAHP 226

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L     +         +   +  A+    +       +  +S  ++    ++G G+ +
Sbjct: 227 SDLADMPWLALRTYYRDTITLTH--ASGGERVELAIRPRMSTDSLYALRSAALMGLGVCV 284

Query: 244 LPDYIVKDNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRN 288
              +++ D+    R++            V+  YP A     +L+ F  
Sbjct: 285 ASSWLLTDDLAQRRLLHLAPSWQADPLPVHLVYPHARFYPARLRRFIE 332


>gi|33592695|ref|NP_880339.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33572341|emb|CAE41896.1| probable LysR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332382110|gb|AEE66957.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 300

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 131/296 (44%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AAEQL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLDELQAFVAVVDTGSITAAAEQLGLTVSAASRTLGRLEEKLQTTLVRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+   +    +   +   + ++    ++P+G+LR+        ++L   +  F   YP
Sbjct: 61  EEGAAFLQHARAILASVGEAEEQMAARRMRPAGRLRVDAATPFMLHVLVPLIAGFHARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  +   +D+     D A R+   ++ S+L  R + T  +   A+P YL+    P
Sbjct: 121 EVELELNSNEGIVDLIEKRTDVAFRIG-VLKDSTLHARAVGTSRLRVLASPAYLERRGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H L+ F    P+ + D+  L   D  +   R   +  +S  ++    + G G
Sbjct: 180 TRTAQLAQHALLGFTQ--PETLNDWP-LRDADGAVLRIR-PTIASSSGETLRHMALAGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L D++  ++     LV++           V   Y        ++  F + +  
Sbjct: 236 IVCLSDFMTGEDRRAGALVQLFARQTLDVRQPVNAVYYRNTALAARITCFVDHVIE 291


>gi|91225331|ref|ZP_01260499.1| putative transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91189970|gb|EAS76242.1| putative transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 307

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 129/287 (44%), Gaps = 9/287 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++R F  VA+ GSFT AA+ L ++ S++S+ ++ LE ++G KL +R  R + LT  G   
Sbjct: 8   EVRHFVTVAQLGSFTLAAQALGMTGSALSKSVARLEKQLGTKLLHRTTRRIALTNDGDSY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +    LE  +  L    + PSG++RI     LG+  +   L E    +  + + +
Sbjct: 68  LADCLKAMTILEEAEKRLSNQQLLPSGRVRIDLPAVLGRRAILPKLLELTSKFEQLDLSI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++  D+  D  D AIR+     S  ++ RK+        A+P YL         ++L
Sbjct: 128 TFNDRPTDLVSDGIDLAIRVGHLENSGDIVARKIGEQKRVICASPSYLATRGPITKKEDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLGSGIALL 244
            +H+ I    +     +  +WL    +   E     +  ++     I+Q  + G+G+A L
Sbjct: 188 AQHDCI----VGWPIGQRHSWLLKNAKGATESVDISARHEIADCEGILQSALSGAGLAQL 243

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           P ++VK   D+  L  ++E +      +   + +      K++   +
Sbjct: 244 PVWLVKQYLDDGQLCPVLEKLNGEGAPISIVWLKTPYILPKIRVIID 290


>gi|78061093|ref|YP_371001.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77968978|gb|ABB10357.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 313

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 141/298 (47%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AA+QL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDSGSITAAAQQLDLTVSATSRTLGRLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +ET + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRTFLQDARAIIESVETAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  +   ID+     D A R+ + ++ S+L  R++ T  +  +A+P Y+    +P
Sbjct: 121 NVELELNSNEGIIDLLERRTDVAFRIGR-LKDSTLHSRRIGTSRIRIFASPAYVAAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++LDKH L+ F    P+ +  +  L     P        ++ +S  ++ Q  + G+G
Sbjct: 180 RKVEDLDKHTLLGFTQ--PESLNVWPILGADGEPCRIE--PGIRSSSGETLRQLALDGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  L D++   +     LV+++          ++  Y      + ++ +F +++    
Sbjct: 236 VVCLSDFMTAQDREAGRLVQVLARQTLEVEQPIHAVYYRNTAISSRIASFVDYLIEAL 293


>gi|206578654|ref|YP_002239297.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|290510793|ref|ZP_06550163.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206567712|gb|ACI09488.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|289777509|gb|EFD85507.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 342

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 123/291 (42%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R +  +  +GS + AA Q+  +Q+++SR++  LE  +G+KL  R    + LT+ G 
Sbjct: 41  IELMRTYIRIIEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKLILRTTHAMKLTDDGE 100

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +R   +V       + +L+ +  +P G LR+      GQ  L   L  FL  +P + +
Sbjct: 101 RCYRHARQVVDAWLALEDDLRIADDQPVGVLRVRAPHAFGQQQLLAPLVAFLQRHPQLSV 160

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L++  +D   D  DCAIR+   +   + +   L  +     A+P  L       S++
Sbjct: 161 EWMLNDNTVDFLSDNIDCAIRVGAEV-DPATVSVLLAEVPRCVVASPELLAKYPPLTSLE 219

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     I         +   +      + +      CL  +S        + G G+A++
Sbjct: 220 ALSGLPWIAINTFYQHEVRLRH--LESGQIVSTAITPCLSTDSLYVARNTALAGLGVAMV 277

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             + V ++     L+ +       S  V+  YP A     +L+ F + +  
Sbjct: 278 SSWTVVEDIAAGRLIELFPQWRPASLPVHLVYPWARYYPTRLRKFLDLMRE 328


>gi|254449980|ref|ZP_05063417.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198264386|gb|EDY88656.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 310

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 128/298 (42%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  + ++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISSLEEHLNVRLFQRTTRSLTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++T + ++   +  P G L +A  + +G+ L+   + EF+  YP
Sbjct: 60  EQGRAFYTGAVAVLEAVDTAEGQVAGITDNPKGSLYVAAPLGVGRRLIAPLVPEFVRDYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I+L L ++ +D++ +  D +  L +P   S+L  + +        AAP Y+     P
Sbjct: 120 LIDIRLRLTDRKVDLTTEGLDISFFLGEP-ADSNLRIKPIADCDRVLVAAPRYIAERGNP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +    L  D HN +      P   E    L T D P         + +    + ++ + G
Sbjct: 179 VDGTALVKDGHNCLNL--RYPGAPEFQWRLQTSDGPQRFRVSGRYECDDGDVLTEWALAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIAL P + V +      LV +          +   Y    +   K + F  ++  +
Sbjct: 237 EGIALKPVFEVAEYLNAGRLVPVATKNPPTPIQMACLYTHRRRQDPKTRLFMEYMTTR 294


>gi|83718422|ref|YP_442910.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167581852|ref|ZP_02374726.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|257139126|ref|ZP_05587388.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83652247|gb|ABC36310.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 306

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 126/294 (42%), Gaps = 11/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G + +
Sbjct: 11  LHVFVSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T++ Y ++   +  L ++  +P G LRI+        +    L EF   YP + +++ 
Sbjct: 71  DATAQPYRQVVDARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFRRYPKVSVEIR 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     P  + +L 
Sbjct: 131 YEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGTPAKVADLA 190

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F    PK      W L    R +              +++     G+GIA +  
Sbjct: 191 RHMCIRF--RFPKSGRLHKWPLRDGRRDVDLDVAGRFVSTDTGAVIDAARAGAGIAFV-- 246

Query: 247 YI---VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++   ++D+     L  ++         ++  Y        KL+AF   +   A
Sbjct: 247 FMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLREHA 300


>gi|188584192|ref|YP_001927637.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347690|gb|ACB83102.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 302

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 132/297 (44%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA SG F  AA  L++S  +++R ++ LE  +G +L  R  R + LTE
Sbjct: 1   MDRLQGMRVFVRVAESGGFAGAARALNMSPPAVTRAVAALEAAIGARLLIRTTRSVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       ++ +L   +     S+  P+G L +   +  G+  +   + ++L  +  
Sbjct: 61  AGARYLEDCRRIFSELAEAEAAAAGSTATPTGTLTLTAPVQFGRLYVLPVVTDYLTHHSA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ +  ++ +++  +  D  +R+   +  S L   ++ ++     AAP YL+    P 
Sbjct: 121 VAVRTLFLDRIVNMVEEGIDVGVRIGH-LADSGLTAVRVGSVRRVVCAAPRYLERHGMPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H +I  G   P  + +  W    ++         L  N+  + +   V G GI
Sbjct: 180 APRDLRAHTVI--GSSNPGSLSE--WRFGREQRTAVAVQPRLTCNTVDAALAAAVEGWGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L  Y V     +  L  ++E+       ++   PE  +   K++AF +    + R
Sbjct: 236 ARLLSYQVAPALADGRLRLLLEEHEAAPVPIHVVSPEGRRAPAKVRAFVDLAATRLR 292


>gi|309781893|ref|ZP_07676626.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308919534|gb|EFP65198.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 331

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 118/296 (39%), Gaps = 6/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR+   +A +G+ + AA QL    ++ S  +  +ETE+G +LF R  R +  TE G 
Sbjct: 4   LDDLRLLVRIADAGNLSAAARQLGWLPATASAALKRVETELGARLFERTTRSMRPTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      +    L+     L +   + SG +RIA T DLG+++L+  L  F   +P ++I
Sbjct: 64  RYLGYARQALEALDEGAESLGQDRTELSGPIRIAATSDLGRHILRPWLDAFCDEHPGVRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L ++  D+  +  D A+R    +Q S+L++R L +       AP Y +    P    
Sbjct: 124 TLVLGDRLADLMREDLDFALRYGH-LQDSALVRRPLASHPRVIVGAPSYFRQHGRPAHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +               L     P         Q +    +  + V G G+A  
Sbjct: 183 DLADHRCLILLRNGEPVTRW--QLTHASGPAPIDVRGGFQCDDGAVVRDWAVAGRGLAFK 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               V  +     L   +         +            +L A  +F+  +  ++
Sbjct: 241 SWLDVAQDVCAGRLEVALPAWSHAPTPLQLVALARRHRPARLTACADFLAARFAEF 296


>gi|288936152|ref|YP_003440211.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890861|gb|ADC59179.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 311

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 123/291 (42%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R +  +  +GS + AA Q+  +Q+++SR++  LE  +G+KL  R    + LT+ G 
Sbjct: 10  IELMRTYIRIIEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKLILRTTHAMKLTDDGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +R   +V       + +L+ +  +P G LR+      GQ  L   L  FL  +P + +
Sbjct: 70  RCYRHARQVVDAWLALEDDLRIADDQPVGVLRVRAPHAFGQQQLLAPLVAFLQRHPQLSV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L++  +D   D  DCAIR+   +   + +   L  +     A+P  L       S++
Sbjct: 130 EWMLNDNTVDFLSDNIDCAIRVGAEV-DPATVSVLLAEVPRCVVASPELLAKYPPLTSLE 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     I         +   +      + +      CL  +S        + G G+A++
Sbjct: 189 ALSGLPWIAINTFYQHEVRLRH--LESGQIVSTAITPCLSTDSLYVARNTALAGLGVAMV 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             + V ++     L+ +       S  V+  YP A     +L+ F + +  
Sbjct: 247 SSWTVVEDIAAGRLIELFPQWRPASLPVHLVYPWARYYPTRLRKFLDLMRE 297


>gi|226943280|ref|YP_002798353.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226718207|gb|ACO77378.1| Transcriptional regulator, LysR family [Azotobacter vinelandii DJ]
          Length = 327

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 117/273 (42%), Gaps = 7/273 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            QL +S +  ++ +  LE  +G+KLF R  R L LT+ GS+       +  +L+  +  L
Sbjct: 49  RQLEMSPAMATKHVDALERRLGLKLFQRSTRRLVLTDAGSQYLDTCQRLLGELDEAEAAL 108

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
               V+ SG LR+   +  G   +   L  F   +P ++I+L L +  +D+  D  D A+
Sbjct: 109 LSQRVEASGLLRMNVPLSFGNRFIAPLLPAFARRHPAVRIELGLTDSQVDLIEDRWDLAV 168

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R+ + +  S L  R+L        AAP YL     P  + EL +HN + +   +      
Sbjct: 169 RIGR-LADSPLQARRLGDCPTLVCAAPDYLDRRGVPRRVVELGQHNCLGYS--LSSWGGS 225

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261
             W    D  +       L  N+  +++   + G G+   P +IV D      LV +  D
Sbjct: 226 REWAFGRDGSVRVAISGDLAANNGDALLAAALDGQGLIYQPLFIVADALQRGELVSLELD 285

Query: 262 VITPSF-TVYFCYPEALKNTGKLKAFRNFIFLK 293
                   ++  YP   +   K++A  +++   
Sbjct: 286 HPPHPLGGIHALYPPERRPPAKVRAMLDYLVEA 318


>gi|300698309|ref|YP_003748970.1| HTH-type transcriptional activator aaeR [Ralstonia solanacearum
           CFBP2957]
 gi|299075033|emb|CBJ54603.1| Putative HTH-type transcriptional activator aaeR [Ralstonia
           solanacearum CFBP2957]
          Length = 298

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  V   G+F  AA +L L+ SSIS+ +  LE E+G+ L +R  R L+LTE
Sbjct: 1   MDVLKRMAIFARVVELGAFNRAARELGLTTSSISQHVRALEAELGVTLLHRSTRKLSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   + V H     Q ++ E   +P+G+LRI    +L    L   L++F+  +P 
Sbjct: 61  AGRVYYEECANVVHAAARGQQKVAELRDEPAGELRITAPSELAHQHLVPALRDFIAAHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++  L ++ ID+     D A+R+ + ++ SSL+ R++        AAP Y+     P 
Sbjct: 121 LAVRFELGDEKIDLVEHRVDLAVRIGE-LRDSSLVARQIAWFDELICAAPDYVGRTGLPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q L   + + F  L        +        +       L  N   ++    + G G+
Sbjct: 180 TPQALADLDWLIFTPLGEPAF--VHLRNAQGHEVRLRVHGRLATNQAQTLKALALDGHGV 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A L    +        LV ++ D     F VY   P       K+      +  
Sbjct: 238 ARLLKADIGTELAQGRLVPLLPDWRLAGFGVYAITPRRDAQPLKVTRCIEHLRA 291


>gi|260568904|ref|ZP_05839372.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260154288|gb|EEW89370.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
          Length = 293

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 134/284 (47%), Gaps = 7/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA QL L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARQLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L++H LI + + +       N        I        +V+S L  ++    G+GI 
Sbjct: 180 PEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 235 ILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 277


>gi|221210947|ref|ZP_03583927.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221169903|gb|EEE02370.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 306

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR I+ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVELRSFTRAADMHGLARPVVSRAIAELEARFGGRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L+  + E Q  + +P G LR+        N     +  F   +P 
Sbjct: 61  TAERIYERCAAVLDELDALEAEAQTQTREPDGLLRLVAHTTAALNQFVPLIAGFKAAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L  + +D+  +  D  I     + S + I R +  I     A P YL+    P 
Sbjct: 121 VRVDVTLTERPVDLVGEGYDIGIVAPYMLSSDTTIVRLIARIPFVIVATPAYLRAHGRPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  +     + +    F     V   +  P    +  NS +   +  + G GI
Sbjct: 181 TPADLVDHPFVPLSPSLRRPALSFRVDGDV---LTLPLRFDISSNSPVFNREMVMHGFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +++    +  LV++++D         +   Y        K+KAF ++
Sbjct: 238 GIVPRTLIETELASGALVQLLDDADLVDGCVELKLAYANRSLLPAKVKAFIDY 290


>gi|254185061|ref|ZP_04891650.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184215653|gb|EDU12634.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 312

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 131/302 (43%), Gaps = 13/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++ +S  +  LE E+G+ L  R  R + LTE G
Sbjct: 9   SLDRFDVFRAVVEAGSFTGAANVLNQARAVVSFHVKQLEAELGVTLLTRTTRRVELTEAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++
Sbjct: 69  ERFYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALR 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL +  Q   L  R +   T  +   A+P  L       
Sbjct: 129 VRLETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVAR 188

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S + L +   +    L       + D +    V RP  +P    L  ++   +  +  
Sbjct: 189 IDSPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKP---YLIADNASVLRAFAQ 245

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+ALLP+++V+D+     L+  +         VY  YP A     K++A+ +FI   
Sbjct: 246 QGGGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFIKRY 305

Query: 294 AR 295
            R
Sbjct: 306 VR 307


>gi|86358592|ref|YP_470484.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282694|gb|ABC91757.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 316

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 127/299 (42%), Gaps = 8/299 (2%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+ +  WD  R F  V + GS + AA +L L+Q +I R +  LE  +G++LF R   GL 
Sbjct: 5   MTLEPSWDFYRSFLTVLQRGSLSAAARELGLTQPTIGRHVDALEQAIGVELFIRSPNGLV 64

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            T+    L      +                + +G +R++ +  +   +L   L      
Sbjct: 65  PTDAAQALKPYAETLAATAAALLRTASGERERVAGTVRLSASEVVAVEVLPRILGPLQEA 124

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP++ I+L   +   D+    AD A+R+ +P Q + LI R +  I +  +A   YL+   
Sbjct: 125 YPELHIELSASDAIEDLVNREADIAVRMAEPQQDA-LIVRCIGDIPIAFHAHRRYLERHG 183

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P ++ +L  H LI F             +     P  E      + +S L+ +     G
Sbjct: 184 IPQTMADLVNHRLIGFDRQTAYVR-----MVMKRYPAPEGIKFSYRTDSNLAQLSAIRAG 238

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            GI L    + ++NP+LV ++ D        +    E+L+ + + +   + +    RD+
Sbjct: 239 VGIGLCQIGLARENPDLVHVLPDAFEIPLGTWVVMHESLRTSPRCRVTFDALVKGLRDY 297


>gi|21492922|ref|NP_659997.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|21467347|gb|AAM55010.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
 gi|327191683|gb|EGE58690.1| LysR family transcriptional regulator [Rhizobium etli CNPAF512]
          Length = 301

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 118/292 (40%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +AR+G F  AA    +S S++S  I GLE  +G++LF+R +R ++LT  G
Sbjct: 7   DLADLETFVAIARAGGFRKAAALRGVSGSALSHSIRGLEARLGVRLFHRTSRSISLTAAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L       +  ++     L      P+G++R+ T  D  + L+   L  F   YPD++
Sbjct: 67  EVLLAELEPRFLGIQAAMDLLDSFRSGPTGRVRVTTLRDAAELLIAPRLHSFRKSYPDVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ ++++ ID+  +  D  IR    +    +  R    +      +P YL     P   
Sbjct: 127 VEVSVEDRFIDMVAEGFDAGIRYGGTVPEGMIASRLTSELEWIVVGSPAYLNERGRPARP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I          +    L   DR +       L +      ++    G G+  
Sbjct: 187 EDLLTHECIRIRTGTDHLCKWE--LGDGDRMVSLDVPGLLTLGDSELSIRMAEEGGGLFY 244

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                V+D     +L  ++ D  +     +  Y    +    L+ F +++  
Sbjct: 245 CLQARVEDKLAAGSLEVVLPDWTSTGPGFHAYYVSHRQVPSALRTFLDYLKA 296


>gi|323526194|ref|YP_004228347.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323383196|gb|ADX55287.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 304

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 126/295 (42%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVILGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  + +  + EL       +G L ++     G+  +      FL   P+
Sbjct: 61  DGAAFLERCRGLLTEWDQAENELSAGRRAVNGHLIVSAPAAFGRKHVAPLAPAFLADKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +   +P 
Sbjct: 121 LQVSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPEYFRQHGKPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++++L +HN + F     +  ++  W    +  +   R+   L  N    + ++   G G
Sbjct: 180 TLEDLPRHNCLAFNL---QGGQNRGWYFRRNGKLVTVRVGGTLDCNDGELLHRWVSEGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     + ++       L  ++++   P + +   YP+      K++ F +++  
Sbjct: 237 LGWRSTWEIQQQLARGELETVLDEFALPDYDILAVYPQQRYVPAKVRYFIDYLKE 291


>gi|260596704|ref|YP_003209275.1| hypothetical protein CTU_09120 [Cronobacter turicensis z3032]
 gi|260215881|emb|CBA28405.1| hypothetical protein CTU_09120 [Cronobacter turicensis z3032]
          Length = 311

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 126/300 (42%), Gaps = 14/300 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +   L++F  V    SF+  A +  +S S ISR +  LE  +G +LFYR+ R +  TE
Sbjct: 6   AVNIRALQLFISVFDGQSFSAVARREGVSASMISRTVRQLEEALGQQLFYRNTRAVIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +    +  +    + ELQ+ S++PSG LRI   +  GQ  +   L      YP 
Sbjct: 66  AGRLFAQYARGITEQFSEARRELQDRSLEPSGLLRINAPVFFGQRHIAPWLTGLAERYPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   +  +D   D  D  +R+   +  SS   R       +  AAP YL     P 
Sbjct: 126 LQLALTQTDDYVDPHRDATDLIVRIG-TLTDSSFHARVFCEQRYYFAAAPRYLARYGAPA 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGS 239
           S  E   H  + +            WLA       +  P  + L  N+  S++   + G 
Sbjct: 185 SPAEFHAHQCLVYSGSSGPN----RWLARKPGEPWVHYPVSARLVSNNAHSLLTAALDGM 240

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+ L PD++  +      LV+++ +      T +  +   YP A      ++A  +++  
Sbjct: 241 GLVLFPDWMTGEWLAQGKLVKVLPEYEAAINTEAQHIAAIYPNARHPPLNVRAAIDYLVE 300


>gi|238788478|ref|ZP_04632271.1| LysR-family transcriptional regulator [Yersinia frederiksenii ATCC
           33641]
 gi|238723391|gb|EEQ15038.1| LysR-family transcriptional regulator [Yersinia frederiksenii ATCC
           33641]
          Length = 301

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 120/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +  V   G F+ AA  L L +S +SR+++ LE  +G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYYAEVVEHGGFSAAARVLGLPKSKLSRRVALLEERLGVRLIQRSTRRFAVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  +    Q  +  +  +P G +RI   + L Q  +   L +F+   P + 
Sbjct: 63  RSYYEHCKAMLEEARAAQESIDLTRAEPRGVVRITCPVALLQATVSTMLADFMATCPLVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D   +  D AIR+R  P+Q S L+ + L        A+P  L    E  +
Sbjct: 123 IHLESTNRQVDPIAEAVDIAIRVRPPPLQDSELVLKVLGNRCQCLVASPELLTRQGEVNA 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G    + +   +        I       L      ++    + G G+ 
Sbjct: 183 PADLTGWPSLGLGQPQQEFIWHLDGPEGAHAAIYHQ--PRLVTADMTTLRSAALSGVGVV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V ++     L+R++ D       ++  +         +++  +++ L+
Sbjct: 241 QLPVMMVTESLATGALIRLLPDWSLRHEIIHAVFASRRGLLPSVRSVLDYLELR 294


>gi|319796296|ref|YP_004157936.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315598759|gb|ADU39825.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 309

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 64/302 (21%), Positives = 128/302 (42%), Gaps = 12/302 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     +  F     +GSF  AA++LH+++S++++ I+ LE  +  +LF R  R  +LT
Sbjct: 1   MSQRLQGIEEFVAAVEAGSFALAAQRLHVTRSAVAKSIARLEARLNTRLFLRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   +        +L+  +     +    +G +RI+     G+  +   L      +P
Sbjct: 61  EEGHGYYERCRRALAELDAAEAVTDTARSTVAGLVRISMPAMFGRLKVGPLLLALARRHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L   ++ +D+  +  D AIR  +   +S L+ R +    M   AAP YL     P
Sbjct: 121 ALSLELAFSDRRVDLVEEGLDLAIRSGELADTSELVARPVGVQWMVLCAAPAYLAERGHP 180

Query: 181 LSIQELDK-------HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ 233
             I+ L         H  + +       +  +++     R +     S L+ +S   +++
Sbjct: 181 RGIEALTASQTSHTPHEAVLYAR--DGQVSTWHFHGADGRLVDVTLPSRLRCDSAEVLLE 238

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G G+A LP ++  D      LVR+ E+     F +      +     K +   +++
Sbjct: 239 AAIGGMGLARLPAWLAADALTAGTLVRVFEEPKPFGFELNVIRSRSRYLPFKTRVVIDWL 298

Query: 291 FL 292
             
Sbjct: 299 AE 300


>gi|170736161|ref|YP_001777421.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818349|gb|ACA92931.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 303

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 118/295 (40%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G 
Sbjct: 9   LQCLVAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +   +  +            +L IA +  +    L   L +F   YP+I++
Sbjct: 69  QY--AAQVHHLLTQCAEATHDVMKPYGDLELTIACSSGVAVLWLTPRLPDFRATYPNIKL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   
Sbjct: 127 RLIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLA--GRTLDAA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+   D   + M    W    D    + +   + +NSY  I+Q  +LG G++L 
Sbjct: 185 DLANETLLRLEDGQRQWMSWSEWFDLNDVDRQKAQPQDITINSYPQIVQMTILGQGVSLG 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             Y++    D   LVR+ E   +     Y   P         + F  ++F +A  
Sbjct: 245 WRYMIDACIDAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWLFEQAEQ 299


>gi|73538511|ref|YP_298878.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72121848|gb|AAZ64034.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 301

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 116/294 (39%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +      G F  A   L + +S +SR+++ LE  +G++L  R  R   +TE G
Sbjct: 3   DLNDLYFYVQAVDHGGFAPAGRALGMPKSRLSRRMAILEERLGVRLIQRSTRRFAVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  Q  ++ +  +P G +R+   + L Q  +   L EF+  +P + 
Sbjct: 63  RIYYEHCKAMLLQAEAAQEAIEVTRAEPRGTVRVTCPVALLQAHVGVMLGEFMARHPLVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D   +  D AIR+R  P++ S L+ R L        A+P  ++    P  
Sbjct: 123 IHLEATNRRVDPVAEAIDVAIRVRPPPLEDSDLVIRPLAERSQCLIASPSLVQAFGMPQF 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  H+  +     P+    +              I        ++     + G G+ 
Sbjct: 183 PVAL--HDWPSLAIGTPQSDHAWKLFGPDGEQATIHHIPRYITGDMIAARNAAIAGVGVC 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V+D     +LVR++         ++  +         ++   + +  +
Sbjct: 241 QLPVMMVRDQLAEGSLVRVLPGWAPRREILHVVFASRRGLLPAVRMLIDHLADR 294


>gi|170739200|ref|YP_001767855.1| MarR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168193474|gb|ACA15421.1| transcriptional regulator, MarR family [Methylobacterium sp. 4-46]
          Length = 309

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 124/291 (42%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             ++      +   GS + AA++L+ S  S+SR ++ LET++G +L  R  R L  T  G
Sbjct: 15  SLEQYEALVAIIERGSLSAAAKRLNRSLQSVSRALTALETDLGTELIRRTTRRLQPTPAG 74

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+        ++   +++++    K +G  RI  ++      +      F+  +P++ 
Sbjct: 75  MILYERLRTALKEIGDARLQVKSEKTKINGLFRIGASVLFAPKFVVPCATAFMNRFPEVS 134

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+L++  +D+     D AIR+   + + SL  +K+  +     AAP YL     P   
Sbjct: 135 IDLVLNDAVVDLIEHRLDVAIRIGD-LGAISLRSKKIAELRRVLVAAPSYLARHGVPRDP 193

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  +    +     E   W  +VD  +   ++    + +         +LG+GI 
Sbjct: 194 DDLASHLCV----VRTFGPEGDAWPLSVDGVVVRTQVKGAFRCSDAAGANAATILGAGIG 249

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L P + V+   D   L  ++     P   V   +P +L+   + + F   +
Sbjct: 250 LAPLWQVRQDLDEGRLELVLPQCEPPPIRVSAVWPGSLETPARTQLFVEMV 300


>gi|107024131|ref|YP_622458.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116688543|ref|YP_834166.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105894320|gb|ABF77485.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116646632|gb|ABK07273.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 305

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G 
Sbjct: 9   LNALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +  ++   SG L ++ T       L   L +F    PD+ +
Sbjct: 69  DYLPPVRNAFRQIADASQRVSGAAD--SGVLTVSVTPFFASAWLVPRLAQFRQACPDVDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  +   D + D  D AIR     +   L   +L+T+ + A A+P  +     P +  
Sbjct: 127 QVLTSHALADFARDGVDVAIRHGLG-RYIGLCSERLLTVEIVALASPGLVARLGMPATPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL     +   D   K    +     +D   G PR      +    ++Q  V G G  LL
Sbjct: 186 ELVGWPQLH--DAERKGWHIWFGAQRID-DFGPPRGPAF--DDSGLLLQAIVAGQGAGLL 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V+    +  LV++ +      F  Y  YP       K+ AFR +I   A+
Sbjct: 241 PAAMVRGELASGRLVQLADVAWLDDFAYYLVYPPHHAERPKVAAFRRWILDAAQ 294


>gi|115352991|ref|YP_774830.1| DNA-binding transcriptional activator GcvA [Burkholderia ambifaria
           AMMD]
 gi|115282979|gb|ABI88496.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 328

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 129/306 (42%), Gaps = 18/306 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      R F   AR  +F+ AA++L ++  ++S Q+  LE E+G++LF R+ + 
Sbjct: 1   MDLRQLPALNAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEEELGVQLFARNGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           L LT  G +  +        L     E++ S      +L ++         +   +  F+
Sbjct: 61  LCLTGAGMRYAQQVRTALMMLADATREVRASDRDR--RLVVSMLSSFAARFVTPRIGTFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P+I ++L   N   D + D  D AIR         L    L         AP  L  
Sbjct: 119 ERHPEIDVELQSTNNLTDFARDDVDLAIRFGFG-NYPGLHVEPLFDEVFFPACAPT-LNG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L  +NL+   D + +   D   L T    + EP+   L  +S   ++   +
Sbjct: 177 GKLPQTPADLVHYNLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSSNLLL-AAI 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIAL+   +      +  LVR+ +      +  +F  P  L N  +++AFR ++F +
Sbjct: 232 EGQGIALVRRSLAVHDLLDGRLVRLFDIDGASPWHYFFVCPPPLLNAPRVQAFRAWMFEE 291

Query: 294 ARDWKF 299
              +K 
Sbjct: 292 VAQFKL 297


>gi|259909480|ref|YP_002649836.1| DNA-binding transcriptional activator GcvA [Erwinia pyrifoliae
           Ep1/96]
 gi|224965102|emb|CAX56634.1| Glycine cleavage system transcriptional activator [Erwinia
           pyrifoliae Ep1/96]
 gi|283479553|emb|CAY75469.1| Carbapenem-hydrolyzing beta-lactamase transcriptional activator
           [Erwinia pyrifoliae DSM 12163]
 gi|310766613|gb|ADP11563.1| DNA-binding transcriptional activator GcvA [Erwinia sp. Ejp617]
          Length = 305

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 124/293 (42%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F L YP I +
Sbjct: 68  SYYLDIKEIFTALNDATRKLQARSA--KGALTVSLLPSFAIQWLVPRLTSFNLTYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D AI   +      L   KL   ++    +P  L       S  
Sbjct: 126 RIQAVDRDEEKLADDVDVAIFYGRG-NWPGLRAEKLYAEYLLPVCSPLLLTGAHPLTSPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H L+   D   +  + +     ++    +        +    ++Q  + G G+AL 
Sbjct: 185 ALAHHTLLH--DASRRDWQSYTRQLGLNTINVQ---HGPIFSHSAMVLQAAIHGQGVALA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 240 NNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|148547428|ref|YP_001267530.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511486|gb|ABQ78346.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 301

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 134/291 (46%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F     +  F+ AA +L L+ SS++R +  LE  +G  L  R  R ++LTE G++ 
Sbjct: 6   AMKMFVATVDAQGFSAAARRLGLATSSVTRLVDALEASLGATLLNRSTRQVSLTEAGARY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++    ++  L+     + +   +P G LR+   ++ G+ ++  +L  FL  +P +++ +
Sbjct: 66  YQRARGIFEALDEADASIADRGEEPVGVLRLCLPVEFGRRVIAPHLGPFLAQHPALELDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  D+     D +IRL  P  +  L+ R+L        A+P YL         +EL
Sbjct: 126 DLSDRLDDLLDGRYDLSIRLGDPSPNDELVCRQLGRFQRWLVASPAYLAGREPLQHPREL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             H  + F        +   W  T  +   E  +S  L+  +   + +  + GSGIALL 
Sbjct: 186 LDHACLRF----RYGQKARPWRLTCGQDSLELDVSGPLRSANADMLRETALAGSGIALLA 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNF 289
           D++V+++     L R+  D          ++   Y    + + ++ AF +F
Sbjct: 242 DWLVREDVLAGRLQRVFPDWQASPGMANNSINALYMPNHRGSRRVNAFIDF 292


>gi|261211917|ref|ZP_05926203.1| transcriptional regulator [Vibrio sp. RC341]
 gi|260838525|gb|EEX65176.1| transcriptional regulator [Vibrio sp. RC341]
          Length = 266

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 9/266 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +  ++I+R+I  LE  + ++L  RHAR LTLTE G + ++  S +  +L +   E+ +  
Sbjct: 2   IPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDEC 61

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
              SG++RI+   +L + ++      F+  YPDI I+L++ N+  D+     D   R+  
Sbjct: 62  RGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRVG- 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P + SSLI RK+  +     A+P+YL N  +P   +EL +H L+         +  +   
Sbjct: 121 PQRDSSLIARKIGEVKDILVASPNYLANHPQPTHAEELHQHQLL-----KGYPLLKWQLT 175

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITP 265
            +    I        Q ++   +   C  G GI L+PD ++++   + +LV+++ D  + 
Sbjct: 176 NSQGETIVNTDRGRFQASALNVVRSACSEGLGITLMPDVMLREFLSDGSLVQVLSDWSSN 235

Query: 266 SFTVYFCYPEALKNTGKLKAFRNFIF 291
              +Y  Y        K++ F +F+ 
Sbjct: 236 PRDIYMLYNHKDHQPEKVRLFIDFVI 261


>gi|193782529|ref|NP_435264.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|193072985|gb|AAK64676.2| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 299

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 126/296 (42%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF      GSF  AAE L LS   + + +  LE  +G++L  R  R  +LTE
Sbjct: 1   MDRLTSMAVFVKAVDLGSFAAAAEALGLSGPMVGKHVRSLEDRLGVQLINRTTRRQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  + +       +   +P GKLR+   +  G++ +   L E    YP 
Sbjct: 61  FGYVYYERCRVVLAEAQAADALASDQLSEPRGKLRVTMPVHFGRHCVTPVLLELARKYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L  +++ ID++ D  D +IR       + LI R++    M   A+P YL++   P 
Sbjct: 121 LELDLSFNDRIIDLAEDGFDLSIRTGVLEDRAGLIARRVARQPMIVCASPSYLESHGCPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L +H  + +    P     F         +    +   +++   +I      G G+
Sbjct: 181 APEDLAQHAAVVYRRSGPVSPWLFPRPGQSSSEVT--PLHRFRLDDLDAIADAAARGLGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LP ++V+   +   LVR++ +     +  +  + +      K++   + +  + 
Sbjct: 239 AWLPYWLVRGRIEAGTLVRLLPEQPPFLYDCHAVWLQTPHLPLKVRVAVDALAAQL 294


>gi|269140330|ref|YP_003297031.1| transcriptional regulator, LysR family [Edwardsiella tarda EIB202]
 gi|267985991|gb|ACY85820.1| transcriptional regulator, LysR family [Edwardsiella tarda EIB202]
 gi|304560154|gb|ADM42818.1| Transcriptional regulator [Edwardsiella tarda FL6-60]
          Length = 311

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 126/291 (43%), Gaps = 8/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F  VA+SGSFT A E+L  S+S+I + ++ LE+ +G++L  R  R + LT++G+
Sbjct: 7   LNGIQAFIAVAQSGSFTLAGERLCRSRSAIGKAVAKLESRLGVRLLQRTTRRVALTDEGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              + +   ++ LE           +  G +R++  +  G+  +   ++  +  YP ++ 
Sbjct: 67  AFLQHSLRAFNALEQAVDVAHAQRGEVQGTIRLSVPVAFGRCWILPVIQRLVQRYPALRP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   N+ I +  +  D A+R+  P  + +LI R++   H    AAP  L  C +  + +
Sbjct: 127 EVSFANQPIALDDERVDIAVRIGPPPNAPTLIARQIGVQHACLCAAPALLARCPDIDAPE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     +         + D +                + ++  +++    + G G+A L
Sbjct: 187 ALAHTPCLVSQPYQRWPLRDRD-----GETRHYAVRQAMVLDDVMALRDAALAGLGVARL 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           PD++         L+ ++         ++  +P       + +   + +  
Sbjct: 242 PDWLAAPLIRRGALIALLTSAAPAGRPIHLLWPSDKYAPRRRRVTIDALTA 292


>gi|251790758|ref|YP_003005479.1| DNA-binding transcriptional activator GcvA [Dickeya zeae Ech1591]
 gi|247539379|gb|ACT08000.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 308

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 128/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++  L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSALNEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNTEYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ +   D  D AI   +      L   KL   ++    AP  L       +  
Sbjct: 126 RIQAVDREEERLSDDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCAPQLLAGEHPLKTPG 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +WLA   R +G  +I+  Q    +    ++Q  + G G+
Sbjct: 185 DLVWHTLLH-------DASRRDWLAYT-RQLGIAQINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALANNVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|170751133|ref|YP_001757393.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657655|gb|ACB26710.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 297

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 137/295 (46%), Gaps = 10/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS  W ++ VF  VA +GS + A  +L LSQ S+SR +  LE  +G  L  R  R ++LT
Sbjct: 1   MSDRWQEMAVFVRVAETGSLSRAGRELMLSQPSVSRIVGALEARLGTTLLLRTTRSISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS        +  ++E  +   +       G +R+A  +  G   +   L  FL  +P
Sbjct: 61  EAGSLYLERARSLLAEVEEAEQAAR-GVDSLQGAIRLAMPVLYGSRAVVPALATFLARHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            ++I++ + +   ++ MD  D AIRL   P+  S+   R+L T+     A+P YL +   
Sbjct: 120 GLRIEITMSDARQNLVMDGVDIAIRLGVGPLADSTFGARRLATVERLVVASPAYLSSRGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P+   EL +H+ I    L  +     +W  T D  +    + + L +NS   I+   V G
Sbjct: 180 PVIPAELARHDCIVQHGLFGR----ESWRFTRDGTVTTVDVPARLWINSAPGILAAAVAG 235

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIAL    +  D      LV+++E        VY  +P   + + K++A  + +
Sbjct: 236 MGIALATRVMAGDELRAGQLVQVLEPYRLDPAEVYAVFPAGPRPSAKVRAIMDHL 290


>gi|224824697|ref|ZP_03697804.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603190|gb|EEG09366.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 309

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 9/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +AR GSFT AAE +  ++S IS+ +  LE ++G  L  R+ R + LTE G +
Sbjct: 11  DALLAFDALARLGSFTAAAEAIGCAKSRISQLVKDLEHDLGTVLVLRNTRRVALTEAGRR 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +++   L+  + +++E+     G LR+++T+   Q LL   L E   L+P ++++
Sbjct: 71  LACHAAQLRSMLDKVRPDIEEAQGAIGGPLRVSSTMSFAQYLLAPLLGELAELHPALEME 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+ +N+  D      D  +R R  +    L+ + +  ++   YAAP YL     P + ++
Sbjct: 131 LVAENRLQDPVEAGLDFCLRTRA-VHDDRLVAKSIGFVYEELYAAPAYLARAGMPQTPED 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L KH L+             +W    D       I   L  + Y  I      G GI LL
Sbjct: 190 LLKHQLLH----NSYNETGLDWRLEKDGQFVSLAIRPTLLCDQYAVIANAACAGVGIGLL 245

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y+V        L  ++    T  + V+  YP       K +AF   +  + R +
Sbjct: 246 PQYVVSPQLARGELCPVLPGWRTSGWPVFLVYPYRHPMPKKYEAFLQRVVPRLRAF 301


>gi|260884544|ref|ZP_05896158.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|260874072|gb|EEX81141.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
          Length = 293

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 7/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPMPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L++H LI + + +       N        I        +V+S L  ++    G+GI 
Sbjct: 180 PEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 235 ILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 277


>gi|126739578|ref|ZP_01755270.1| regulatory protein, LysR:LysR, substrate-binding [Roseobacter sp.
           SK209-2-6]
 gi|126719224|gb|EBA15934.1| regulatory protein, LysR:LysR, substrate-binding [Roseobacter sp.
           SK209-2-6]
          Length = 300

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 128/297 (43%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  VA +GSF   A ++ LS  S +R I+ LE  +G +L  R  R + LT+
Sbjct: 1   MDRLQSLEVFIAVAEAGSFVAGARKVGLSAPSATRGINALEARLGARLLSRTTRRVRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +++        +++KPSG+LRI    + G+  +   L +FL L+  
Sbjct: 61  VGKAYLEDARHILAQMQAADDAATGAAIKPSGQLRITCPTEFGRIYVAPILTDFLDLHHS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   +++ ++ +++  +  D A+R+ + + SS L   ++  +       P Y +    P 
Sbjct: 121 VTADVLMVDRIVNMVEEGFDLAVRIGE-LPSSGLTAVRVGQVRRLICGTPEYFEKNGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H +I+   + P       W    +          L V+S  + +     G G+
Sbjct: 180 TPADLQQHQMISASPVSPVT----EWRFGSELQTPVRIEPRLIVSSVATAISVARRGWGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y V  +     L  ++ED       ++  + E  +   K++AF +    + R
Sbjct: 236 CRVLSYQVGPDLQSGKLQTVLEDFEPTPLPIHLVHVEGRRAPAKVRAFVDLAKTRLR 292


>gi|114561397|ref|YP_748910.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114332690|gb|ABI70072.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 293

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 15/295 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +  +V  SG F+ AA+ L++  + +SR +S +E ++G+ +  R  R + LT++G +
Sbjct: 6   DDLDILLMVVDSGGFSAAADALNIQVARVSRAVSKIEQQLGVTILNRTTRRVELTDEGRQ 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     +L+  + EL      P G+LR+        + L   +K+F   YPDI++ 
Sbjct: 66  FVESVRGGLQQLQRAEDELVRRGELPQGRLRVDAASPFVFHQLVPLMKDFRAAYPDIELA 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L  +   +D+     D AIR+ K +  S+L  R L    +H  A+  YL     P  + +
Sbjct: 126 LTSNEGYVDLLEKRTDVAIRIGK-LADSTLHARPLGKSALHIVASAEYLARRGVPQKVSD 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+ F +  PK +  +           +     +  ++  ++ Q  + G+GIA L 
Sbjct: 185 LACHELLGFTE--PKILNHWPLKGC------DVITPTISTSNGETLRQLALAGNGIACLS 236

Query: 246 DYIVKDNPNLVRIMEDVITPSFT------VYFCYPEALKNTGKLKAFRNFIFLKA 294
            +++ D+    R++  + +  FT      V   Y ++     ++ AF  FI  + 
Sbjct: 237 SFMINDDLAAGRLVPILQSEKFTHIEREQVNAVYYKSSIVARRISAFIEFIQPRL 291


>gi|225629364|ref|ZP_03787397.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|261217496|ref|ZP_05931777.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320371|ref|ZP_05959568.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261757099|ref|ZP_06000808.1| transcriptional regulator [Brucella sp. F5/99]
 gi|225615860|gb|EEH12909.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|260922585|gb|EEX89153.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293061|gb|EEX96557.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261737083|gb|EEY25079.1| transcriptional regulator [Brucella sp. F5/99]
          Length = 304

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 10/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L+
Sbjct: 1   MIPDIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G K       + ++ E T +    S+   S    IAT    G   L   + +F+  +P
Sbjct: 61  DAGRKFLPEVRRLLNQTEDTMLRAMASAQSTS-SFSIATLPTFGTRWLMPRIPDFVEKHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + +   +   D      D AI   +P+ +       L +  +   A+P  LK  R P
Sbjct: 120 GIALNVASRSGVFDFEEQPFDLAIHYGQPVWAHD-TCTFLCSEVIVPVASPSLLKTRR-P 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL+   L+    L  +      W  +     G+      +   +  ++   + G G
Sbjct: 178 ASPEELENEPLLH---LATRPKMWAQWFESCGVE-GQSAYRGHRFEQFSMVIGAALAGLG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ALLP Y+++    +  LV + E  +      Y   PE        + F  +I  + 
Sbjct: 234 FALLPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEGKLENPLTQVFCQWIAGQV 290


>gi|294648737|ref|ZP_06726197.1| transcriptional regulator [Acinetobacter haemolyticus ATCC 19194]
 gi|292825412|gb|EFF84155.1| transcriptional regulator [Acinetobacter haemolyticus ATCC 19194]
          Length = 301

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 126/296 (42%), Gaps = 11/296 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           ++ D    ++VF  +A  G+ + AA+ L+ S++ +SR +  LE     +LF R+ R ++L
Sbjct: 3   INMDTLKAIQVFVCIAHQGNLSKAAQHLNYSKAMVSRYLEHLEQTFSTRLFQRNTRKVSL 62

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G K       +  + +  +     +  + SG +R    + L Q  +   +K+F   Y
Sbjct: 63  TPAGEKALVYCENILQQQQLLE--GLAAPEQHSGTIRFTCGLFLFQLGVNECIKQFKKRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I   + L    +D+   + D A+R+ + +    LI R +  I     A PHYL++   
Sbjct: 121 PQIHFDVYLTENTVDLMDAHVDLALRITQKVAD-GLIARPVCQIESTFCAHPHYLQDHTP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                +L +H+ I          + +    T  +P   P     + N  +++ Q C+   
Sbjct: 180 LSHPSQLIQHDCIAHH----THNQYWTLFDTDQQPQNYPLNVTFKSNDVIALYQMCLKAE 235

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA+LP  +V+ +     L ++  D   P  T+   Y          + F  F+  
Sbjct: 236 GIAMLPTLLVRQDIAQQRLQQVFTDFSAPDLTLSLVYASRQHLPKITQEFIAFVIE 291


>gi|218507938|ref|ZP_03505816.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 260

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 113/249 (45%), Gaps = 5/249 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + +  F  V  +GS + AA +L LS+S +S +++ LE  +G  L +R  R LTLTE G+ 
Sbjct: 5   EGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKALGGTLLHRTTRKLTLTEDGAV 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  ++E    ++ E     SG +RIA  +  G+  L   L  FL  +PDI + 
Sbjct: 65  FLERAGRIVREIEEAAADMAERRGALSGPIRIAAPVTFGRMHLGPALYPFLAQHPDIHLT 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +D++ +D + D  D  IR   P+  S L+  KL        AAP YL     P S+ +
Sbjct: 125 LDIDDRRVDAASDGYDAIIRNG-PLADSRLVAWKLAPSRRLLCAAPDYLARQGMPTSLAD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L+ H  I + +             T +  I       L +N+   +    + G GIALLP
Sbjct: 184 LNNHRGIFYTNRGVADWR----FQTPEGAILVRAKPALGINNGDMLRDAAIAGLGIALLP 239

Query: 246 DYIVKDNPN 254
            +I      
Sbjct: 240 AFIAGPAIR 248


>gi|307129807|ref|YP_003881823.1| DNA-binding transcriptional dual regulator [Dickeya dadantii 3937]
 gi|306527336|gb|ADM97266.1| DNA-binding transcriptional dual regulator [Dickeya dadantii 3937]
          Length = 308

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 128/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++  L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSALNEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSDYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ +   D  D AI   +      L   KL   ++    +P  L       +  
Sbjct: 126 RIQAVDREEERLSDDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPQLLAGEHPLKTPG 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +W+A   R +G  +I+  Q    +    ++Q  + G G+
Sbjct: 185 DLVWHTLLH-------DASRRDWMAYT-RQLGITQINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALANNVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|212635225|ref|YP_002311750.1| transcriptional regulator [Shewanella piezotolerans WP3]
 gi|212556709|gb|ACJ29163.1| Transcriptional regulator protein, putative [Shewanella
           piezotolerans WP3]
          Length = 295

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 11/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L++F +V + GSFT AA  L L ++++SR+I  LE  +  +LF+R  R L LT+ 
Sbjct: 1   MRIEDLKLFTIVVKLGSFTAAANALDLPRANVSRRIGELEKALNAQLFFRTTRQLRLTQH 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     V    E  + +L +   KP GK+++    +  +  LQ  L +F  LYPDI
Sbjct: 61  GEAYYHELLTVLEGFEQAKNKLHDIDEKPIGKVKVGFLPESDEA-LQPALAKFQQLYPDI 119

Query: 123 QIQLILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ + + N  + DI     D  I   K +Q S  I R+++++    YA+P YL +  EP 
Sbjct: 120 ELDMRITNNYETDIYALALDFVIYAGK-VQDSGFIARRILSLGRGIYASPEYLASHGEPQ 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ EL KH+ I +        + ++ ++           S    N    + +  V G GI
Sbjct: 179 SLAELSKHDAICYRWPDGSIDDKWDLISET-----VHVKSRFTCNHMGFVRRAIVGGQGI 233

Query: 242 ALLP---DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +P        +   +VRI+    +    V+  YP+    +   +   +F+  +
Sbjct: 234 GFMPPLFALAAIEAKRIVRILPQYESKKEDVWLIYPDRKGISLPTRLLIDFLLQE 288


>gi|212635360|ref|YP_002311885.1| transcriptional regulator [Shewanella piezotolerans WP3]
 gi|212556844|gb|ACJ29298.1| Transcriptional regulator [Shewanella piezotolerans WP3]
          Length = 297

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 133/295 (45%), Gaps = 13/295 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA   SFT AAE+L LS+  +SR ++ +E  +  +L +R  R ++LT 
Sbjct: 1   MDRLTAMRSFVEVAHCASFTKAAERLDLSRLQVSRHVNEIEAWLEQRLLHRTTRKVSLTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         + H+    ++  +  +   SG +RIA  I L QN+L   +++F   +  
Sbjct: 61  AGEAALLRCEMILHETLALEVAAKHHTPSLSGTIRIAAPIGLTQNMLIDAVEKFTGAHAG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +QL   ++  ++  +  D A+R  +     +LI R+L+ I     A+  YL+   EP 
Sbjct: 121 VNVQLFASDQFAELVDERIDIALRYTEQPAD-NLIARRLMNIDSVICASAAYLEQFGEPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
            I+EL +HN           +E  +W    D       +S  ++ N    +++    G G
Sbjct: 180 EIEELKEHNCFLH-------LEKTSWEFIRDNSRSAITVSGSIKANDLGVLVKAAQHGKG 232

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I LLP  +      + +L  I+ +   PS T++  Y         ++ F +F+  
Sbjct: 233 IVLLPCDLANPLISDGSLQMILSEYEIPSSTLWAVYLSRSYQLPVVRQFIDFLAE 287


>gi|209549667|ref|YP_002281584.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535423|gb|ACI55358.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 298

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 118/297 (39%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V  SG F  A+  L + +S +SR++S LE  +G +L  R  R   +TE G
Sbjct: 3   DLNDYYYFAAVVSSGGFASASRDLKIPRSKLSRRVSRLEDGLGARLIERSTRHFRVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  +  + E+   P G +R+   + L    + G L EFL  YP I+
Sbjct: 63  QAFYERCQTILQEADRAKSIVSEAQSDPQGAVRMGCPLGLVDISVGGILPEFLERYPKIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+I  ++  D+     D  +R   +P   +SL  RKL        A+P  ++       
Sbjct: 123 LQIIGSDRRADLINKRIDLEVRATNEPETQTSLTMRKLDRARRILVASPSLVERTGSLNC 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL     +     +      +  +   D          L   S  +I+     G G  
Sbjct: 183 VDELADLPTLAMTSWV--SFHSWELIGPNDAKRVIRHQPRLTCRSMTAILDAARAGLGFG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LL +   + +     LVR++ +  +     Y  +  A      ++   +F+  K+R 
Sbjct: 241 LLLESACEADLQAGKLVRVLPEWQSEESQFYIVFTTAKGMPPAVRVLIDFLVEKSRQ 297


>gi|296101094|ref|YP_003611240.1| Transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055553|gb|ADF60291.1| Transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 300

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 120/292 (41%), Gaps = 5/292 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   V R GSF  AA++L +S +++S  I+GLE+ +  +LF R  R + LT+ G 
Sbjct: 6   LTELEVVMAVVRRGSFRGAAQELGMSATAVSNAIAGLESRLETRLFNRTTRSVALTDAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +          ++     E+   + +P+G LR+    ++G   L   L +F++ YP +++
Sbjct: 66  RYVARIGPALQEIRQAGEEIHSDTGEPAGTLRLNVPNNIGSLFLDQLLIDFMIRYPKMRV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + + + + IDI  +  D  IRL + +    +       I     A P Y      P + +
Sbjct: 126 ETVSEARMIDIVAEGYDAGIRLEEAVPQDMIAVPLTGEIRQLVTATPDYFARHGVPQTPE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I                  V   +  P       +   + ++    G GI  L
Sbjct: 186 DLLLHQGIGMRMAHGGIYRWELARRGVQYALAVP--PRFATSDLFASIRAVKAGLGIGFL 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P+  ++D   +  L+ ++ D   P   +   YP        L+A    I  +
Sbjct: 244 PELYIRDELKSGELLSVLNDWTQPFAGLRLYYPGHRHVPPGLRALVAMIRER 295


>gi|197337140|ref|YP_002158714.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314392|gb|ACH63841.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 309

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 129/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L LS ++++ ++  LE    +KL  R  R ++LT+
Sbjct: 1   MDKFSDMTMFVSIVKHQGLAAAGRELGLSPATMTARLQALEERYRVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++ + E+   +   +  +     +  G LR+A   D+G+  +   L EF   YP+
Sbjct: 61  AGELYYKASLEILDNVNEAENLILNGVKEVKGSLRVAAPKDIGKQYILPILSEFCEKYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +I+    D  +R  + +  SSLI R+L + H    A+P YL     PL
Sbjct: 121 VVPYLYLNDDVSNIAESGIDIVVRYGE-LADSSLISRRLSSSHRVLCASPDYLAKHGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + Q+L  H+ +    ++    E   W     D+      +     +    +  + + G+G
Sbjct: 180 TPQDLVNHHCLA---MVRSHEELKTWHFQGSDKKNVITVLPKRFSDDGEVVRYWALEGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVIT--------PSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+D+     LV ++   +          S  +   Y        +++ F +F
Sbjct: 237 IALKSILDVQDDINNRRLVTVLNGYMANFNTSTSVSSADLNVVYMSKKYQPKRIRLFLDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LLER 300


>gi|300703240|ref|YP_003744842.1| hth-type transcriptional activator aaer [Ralstonia solanacearum
           CFBP2957]
 gi|299070903|emb|CBJ42205.1| putative HTH-type transcriptional activator aaeR [Ralstonia
           solanacearum CFBP2957]
          Length = 305

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 126/295 (42%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE 
Sbjct: 1   MEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P +
Sbjct: 61  GSHFYDDIAPLFERLREVHADTTAASETVSGALRIAAPYEVGAQYLTEPVCQALARFPHL 120

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+ +  +  D+     D   + + + +  SSL+ R++V I    YAAP  L       
Sbjct: 121 QIQVHISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAGRAPLA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L     ++  D            A    P   P    LQ  +    ++  V G G+
Sbjct: 181 TPADLSGWPCLSGPDDASWGFRPAG--APAAEPFEVPIQPRLQTLNAEMRVRAAVRGLGV 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A +   +     +   LVR++ D       VY   P       K++ F + +  +
Sbjct: 239 ARMARSVGDVEVETGRLVRVLSDYEPTPLRVYALMPARKLVPRKVRVFLDALEAQ 293


>gi|152969572|ref|YP_001334681.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330010187|ref|ZP_08306702.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|150954421|gb|ABR76451.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328534603|gb|EGF61180.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 313

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 137/289 (47%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F  AAE+L +S + +S+++S LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVMLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   ++    EL +    P G LRI ++   G+ ++   L    L YP +++
Sbjct: 67  RIYEWAQRILQDVDEMMDELSDVRQVPQGTLRIISSFGFGRRVVAPALSALALQYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  + ++ +D+  +  D  IR+   I + +LI R+L   H    A+P +L     P  + 
Sbjct: 127 RFDVQDRLVDLVNEGVDLDIRVGDDI-APNLIARQLAANHRVLCASPQFLARHAPPKQLS 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L + +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLAALPCLVIKERDHPFGVW--QLHSKEGQHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V++   + +LV+++ D   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVRENIASGHLVQVLPDYWQPA-NVWAVYVSRLATSAKIRTTVEFL 291


>gi|163793590|ref|ZP_02187565.1| regulatory protein, LysR:LysR, substrate-binding [alpha
           proteobacterium BAL199]
 gi|159181392|gb|EDP65907.1| regulatory protein, LysR:LysR, substrate-binding [alpha
           proteobacterium BAL199]
          Length = 305

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 7/262 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A + SFT A  QL +S S+I + ++ LE  +G++LF+R  R + LT +G+   
Sbjct: 7   LNAFVQAADARSFTAAGRQLGVSSSAIGKAVARLEERLGVRLFHRSTRAIALTPEGALFL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R    +  + E  ++E+ ++   P G+L ++    L   L+   +  F+  YP+I+++L 
Sbjct: 67  RRCRRILSEAEDAELEIAQTQGAPRGRLNVSLP--LAGILMMPAISAFMHAYPEIELELD 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  IR  + I  S L+ R L T  +    +P Y  +   P +  +L 
Sbjct: 125 FSDRLVDVIDEGFDAVIRAGE-IGDSRLMSRTLGTFQLRLVGSPVYFASKGYPQNPDDLK 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +         +E +  L      +          N+   ++     G GIA LPD+
Sbjct: 184 QHACLQHRYATSGKLERWP-LQHKGEALDLDLPKTAVANTIDPLIHLAEQGLGIACLPDF 242

Query: 248 IVKD---NPNLVRIMEDVITPS 266
            ++    N NLV +++D I  S
Sbjct: 243 AIRRQLANGNLVTVLDDHIQHS 264


>gi|149376180|ref|ZP_01893945.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
 gi|149359585|gb|EDM48044.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
          Length = 314

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 118/289 (40%), Gaps = 6/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +D L V   VA   + T AA  L +  ++ S  +  +E E+G++LF R  R L L+  
Sbjct: 1   MTFDDLTVVLKVAEFRNITAAATSLDMRAATASAAVKRVEQELGVELFIRSTRKLRLSAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K      +    L   +  +  SS   +G++R++ + DLG+N +   + + +  +  +
Sbjct: 61  GEKYLPQCQQALGLLNEARQSIHSSSETVAGEIRLSVSSDLGRNRVVPWIDQLMASHYGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++ + + ++D   D  D A+R   P   S+L   K+  +     A P YL     P  
Sbjct: 121 SLRVQITDSNVDFFRDSVDMALRYGSP-DDSNLYGFKICDVPRLLCATPEYLSEHGTPEH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  HN + +   +     D                     N    + ++CV G GIA
Sbjct: 180 PHDLAVHNGLFY--QLQDIPYDLWTFKRDSEEFRVKMKGNRASNDGDLVRRWCVAGHGIA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +     + D+     ++ +M D   P   ++   P     T  ++  R+
Sbjct: 238 VKSCLDMSDDLLAGRVINVMPDYTPPIAELWLICPTRQSITPAVRLLRD 286


>gi|70728671|ref|YP_258420.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342970|gb|AAY90576.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 299

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 131/296 (44%), Gaps = 13/296 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F V+  +GSFT AA+QL  S+  +S++IS LE    + L  R  R L LT  G+ 
Sbjct: 2   DDLAAFAVLVEAGSFTLAAQQLGCSKGQLSKRISALEARYAVVLLQRTTRRLDLTAAGAA 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  ++E     L        G +R+   + LG+    G L EF   YP +QI+
Sbjct: 62  LLPQAQALVAQVERAHQALARLKDDMVGPVRLTVPVSLGETFFDGLLLEFSRHYPQVQIE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+N   D++ +  D A+R  +      L+ R L+  H    A+P YL+   EP + QE
Sbjct: 122 LDLNNSYRDLTREGFDLAVR-SEVANDQRLVARPLLAWHEMTCASPAYLEQYGEPRTPQE 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALL 244
           L  H  +       +      WL      +   R+S     N Y  + +  ++G+GIA L
Sbjct: 181 LAGHRCLLNSHYSGR----EEWLYHQRHELLRVRVSGPFASNHYNLLKKAALVGAGIARL 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P Y++     +  L  ++ D  T S  +Y  +        + +   +++     DW
Sbjct: 237 PSYVLHSELADGRLRWLLRDYQTRSMPMYLVHSYQGGLPKRTQVLADYLM----DW 288


>gi|260547065|ref|ZP_05822803.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260755522|ref|ZP_05867870.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260758745|ref|ZP_05871093.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260762579|ref|ZP_05874916.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|261214793|ref|ZP_05929074.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261219404|ref|ZP_05933685.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261222949|ref|ZP_05937230.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261315815|ref|ZP_05955012.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261322466|ref|ZP_05961663.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261750979|ref|ZP_05994688.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261754233|ref|ZP_05997942.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|261757479|ref|ZP_06001188.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265998908|ref|ZP_06111465.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|260095430|gb|EEW79308.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260669063|gb|EEX56003.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260673005|gb|EEX59826.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675630|gb|EEX62451.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260916400|gb|EEX83261.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|260921533|gb|EEX88186.1| transcriptional regulator [Brucella ceti B1/94]
 gi|260924493|gb|EEX91061.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261295156|gb|EEX98652.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261304841|gb|EEY08338.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261737463|gb|EEY25459.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261740732|gb|EEY28658.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261743986|gb|EEY31912.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|262553597|gb|EEZ09366.1| transcriptional regulator [Brucella ceti M490/95/1]
          Length = 293

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 7/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L++H LI + + +       N        I        +V+S L  ++    G+GI 
Sbjct: 180 PEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 235 ILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 277


>gi|170694464|ref|ZP_02885617.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140598|gb|EDT08773.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 278

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/275 (25%), Positives = 127/275 (46%), Gaps = 11/275 (4%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++   +SR I+ LE  + I+LF R  R ++LTE+G + +         LE         +
Sbjct: 1   MTPPGVSRAIARLEKRLNIRLFSRTTRSVSLTEEGRRFYEQVMPHLAGLEEAAAAAAGGA 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
               GKLRI     + + +L   L  F+  +P+++I+ I  +   D+ MD  D A+R  +
Sbjct: 61  SAVRGKLRINLDPVVYRTILGQQLDAFMDAHPELEIEFIARDSLGDLVMDGFDLAVRFGE 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK--HNLITFGDLIPKCMEDFN 206
           P ++S+LI RKL+   +   AAP Y+     P   ++L+   H  + F +  P+  + F 
Sbjct: 121 P-KASTLIARKLLDTRIVTVAAPSYIARWGRPSRPEDLEGRSHRCLEFRN--PETGKPFQ 177

Query: 207 WLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALL----PDYIVKDNPNLVRIMED 261
           W     R  I       L VN   +++  C+ GSGIA +     + ++ D   L+ +  +
Sbjct: 178 WEFHRKRKRIVVDTQGRLTVNDPGALLNACLAGSGIAQMLLLGAEPLIAD-GRLINLFPE 236

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +   + +Y  Y        K +AF +F+    R+
Sbjct: 237 WVDERYPLYVYYASRHHVPAKTRAFLDFVIELTRN 271


>gi|91783360|ref|YP_558566.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687314|gb|ABE30514.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 304

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVILGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  + +  + EL       +G L ++     G+  +      FL   P+
Sbjct: 61  DGAAFLERCRGLLTEWDQAENELSAGRRAINGHLIVSAPAAFGRKHVAPLAPAFLADKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 LQVSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++++L +HN + F     +  ++  W    +  +   R+   L  N    + ++   G G
Sbjct: 180 TLEDLPQHNCLAFNL---QGGQNRGWYFRRNGKLATVRVGGTLDCNDGELLHRWVSEGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + ++       L  ++++   P + +   YP+      K++ F +++
Sbjct: 237 LGWRSTWEIQQQLARGELETVLDEFALPDYDILAVYPQQRYVPAKVRYFIDYL 289


>gi|262043623|ref|ZP_06016732.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038961|gb|EEW40123.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 313

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 137/289 (47%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F  AAE+L +S + +S+++S LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVMLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   ++    EL +    P G LRI ++   G+ ++   L    L YP +++
Sbjct: 67  RIYEWAQRILQDVDEMMDELSDVRQVPQGTLRIISSFGFGRRVVAPALSALALQYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  + ++ +D+  +  D  IR+   I + +LI R+L   H    A+P +L     P  + 
Sbjct: 127 RFDVQDRLVDLVNEGVDLDIRVGDDI-APNLIARQLAANHRVLCASPQFLARHASPKQLS 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L + +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLAALPCLVIKERDHPFGVW--QLHSKEGQHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V++   + +LV+++ D   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVRENIASGHLVQVLPDYWQPA-NVWAVYVSRLATSAKIRTTVEFL 291


>gi|218507503|ref|ZP_03505381.1| transcriptional regulator, LysR family protein [Rhizobium etli
           Brasil 5]
          Length = 264

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 112/258 (43%), Gaps = 6/258 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V  +GSF  AAE   +S + +++ I  +ET +G KL +R  R   LTE G   +
Sbjct: 5   MAMFVRVIDNGSFAAAAEIAQVSPAMVAKHIKTIETRLGAKLIHRTTRRHQLTEVGQLYY 64

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++   +    E    P G+LR+   +  G  +L   L ++   YPD+ I+L 
Sbjct: 65  ERCKRALSEVALAEASASELQSAPRGRLRVVAPVSFGTQVLVPALIDYQNAYPDVSIELS 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD+   D+  +  +  I +  P+   SL+ R L        AAP YL     P+S + L 
Sbjct: 125 LDSNVHDLIGEGFELGIHIG-PLSDDSLVARPLTPYRRILAAAPDYLARHGRPVSPEALT 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +  G    +  + ++ +         P       N   ++    + G+GIAL P+ 
Sbjct: 184 NHLCL--GHSYWRRQDRWHLVGPGGEMRDVPISGKFSTNQGAALRMAALSGAGIALQPEL 241

Query: 248 IVKDN---PNLVRIMEDV 262
           ++  +     L +++ + 
Sbjct: 242 LLAADIAEGRLEQVLPEW 259


>gi|326317829|ref|YP_004235501.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374665|gb|ADX46934.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 299

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 118/302 (39%), Gaps = 13/302 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   LR F  VA+  +F  AA+ L +++S++S+ I  LE  +G+ L  R  R + LT
Sbjct: 1   MPADLQLLRFFLAVAKEQNFRAAADHLGVTRSAVSQGIRRLEDGLGVALVQRSTRHVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +LH   +     +     E   +     G LR+A T    + L    +  F   +P
Sbjct: 61  EAGERLHGQIAGPLSAVHAALEE-AATDGPARGLLRVAATSIAERFLSGPLIASFAQAHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + + + +++ DI     D  +RL + I+   +             A P YL     P
Sbjct: 120 GVTLDITVTDEESDIVAAGFDAGVRLGEVIEQDMVAVPLTGPQRQMVVATPQYLAAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  I +          + +     R         +  N  L +++  + G+G
Sbjct: 180 RHPRDLLAHACIGWRPAPGVAPYRWEFRED-GRDFDLAVEPRITTNDMLLMIRTALAGAG 238

Query: 241 IALLPD-----YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I +  +     YI +    L  ++E+ +      Y  +P       KL+A    +    R
Sbjct: 239 ITIGMEETFAPYIAR--GELEPVLEEFLPRFPGFYLYFPSRRNTPRKLRA----LVEHVR 292

Query: 296 DW 297
            W
Sbjct: 293 AW 294


>gi|260596458|ref|YP_003209029.1| putative HTH-type transcriptional regulator ltrA [Cronobacter
           turicensis z3032]
 gi|260215635|emb|CBA27915.1| Probable HTH-type transcriptional regulator ltrA [Cronobacter
           turicensis z3032]
          Length = 298

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 128/294 (43%), Gaps = 10/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  V  SGSF+ AA +L  + SS+SR +S LE E+G KL  R  R L L+E GS +
Sbjct: 8   DIAVFVQVVESGSFSAAARKLGSTPSSVSRSVSRLERELGCKLLVRTTRKLRLSEAGSGV 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  + +         +   +S  P G++ +     +G+ ++   ++ FL  YP++ I L
Sbjct: 68  FQRAASMMDAARDVMAQGGTASQAPQGRVTLGVPKAVGRFVIHPLMEAFLARYPEVDICL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ +D+  D  D A+R+     S  L  + L+ I     A P YL     P + Q L
Sbjct: 128 RLEDRYMDLIDDEVDLALRITDS-PSPGLYGKPLMQIDHLLCATPDYLARHGTPETPQAL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ I+ G+        F       + +          N     +       GI  LP 
Sbjct: 187 RQHSCISLGETAADARWKFR---RDGKSVVVQTHGRYAANHTGVRLDAVKRHLGIGSLPR 243

Query: 247 YIVKD---NPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +   D      +V+++ +     + S  ++  +  +     K++A  +++  + 
Sbjct: 244 FTASDALAAGEIVQVLPEWEFISSYSGKLWLLWSTSRHMPAKIRALIDYLTERL 297


>gi|157370446|ref|YP_001478435.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157322210|gb|ABV41307.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 303

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 129/288 (44%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AA +L ++ S++S+ +  LE  +G+ L +R  R L LTE G+  H
Sbjct: 1   MAVFATVVAEGSFAGAARRLGMTPSAVSQHMRSLEKALGVPLLHRSTRRLALTEAGAAFH 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  L E      G+LRIATTI +G   L   L   L  +P + ++++
Sbjct: 61  PGCEAMLFQAQQAEQRLAELRDTLVGELRIATTIGIGGRPLAEALAPLLQAHPKLTLRVL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D++ +D+     D A+R+ + +  +++I   L    M   AAP YL     P + Q+L 
Sbjct: 121 ADDRIVDMIEQRIDIALRVNRQLADANMIAHPLAEWPMVLCAAPRYLSQYGVPEAPQDLV 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  I+                 +   + E     +  +S   +  +   G GI++ P Y
Sbjct: 181 QHRWISGAFSGAHLDLHHQGGQQLKLRLAE---GQIVSDSMTVMRGFTRSGLGISIQPLY 237

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEAL---KNTGKLKAFRNF 289
            ++D      L+++M +       ++    E     KN   L+  R++
Sbjct: 238 EIEDELQRGELIQLMPEWRPAPLRLHALTLERAMPEKNRQALRYLRDY 285


>gi|259415674|ref|ZP_05739595.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259348904|gb|EEW60666.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 340

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 135/294 (45%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FDW+ LRVF  + R    T A + L + Q++ISR++  LE  +G  LF R A G  LT 
Sbjct: 42  HFDWNDLRVFIALHRMRRMTDAGKVLGIDQTTISRRVRALEKAIGTSLFLRRADGFELTA 101

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K+     E+    E     +   + + SG +R+     LG   L   L +F   +P 
Sbjct: 102 AGEKILPFALEIEQASEQLHEAVSGQNKRLSGSVRVGAPDGLGTYFLPSILTQFQKDHPG 161

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+++  ++   ++      A+ L  P +S  L+ RKL   H+H + +  Y+     P 
Sbjct: 162 VDIEVVSSSRAFRVASKEVHLALSLSLP-ESGRLLARKLGDYHLHFFGSADYVSEHGVPQ 220

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL  H L+ +   +      F+        +G  R      +S  +  +    GSGI
Sbjct: 221 TLDELKDHRLVGYIADM-----LFSPEVRYLEELGLRRTVRFASSSMAAQKEAIRAGSGI 275

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LP ++  ++P+LV ++ +      TV+    +A ++  +++A   F+   AR
Sbjct: 276 GILPRFMALNDPSLVPVLTNEYLLKRTVWIVGHQATEDLARVRAVSEFLQKAAR 329


>gi|317493203|ref|ZP_07951626.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918863|gb|EFV40199.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 305

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 128/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSSLNEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNTAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++     D  D AI   +      L   +L   ++    +P  L +        
Sbjct: 126 RIQAVDREEGKLADDVDVAIFYGRG-HWPGLRVERLYAEYLLPVCSPQLLLSEHPLKDPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           ++  H L+             +WLA   R +G   I+  Q    +    ++Q  V G GI
Sbjct: 185 DMAYHTLLH-------DTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHGQGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+    + Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQTEIEAGRLVCPFNDVLISKNSFYLVCQDSQAELGKIAAFRQWILARA 292


>gi|307319997|ref|ZP_07599419.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306894374|gb|EFN25138.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 293

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 119/299 (39%), Gaps = 10/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  VA   +F  AA++L +++S++S+ +  LE   G  L  R  R + LTE 
Sbjct: 2   IDMNLLPLFLAVAEEDNFRAAADRLGVTRSAVSQGMRRLEDAFGTTLVTRTTRSVRLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    S+     +      + +  +P G LRIA T    Q L    +  F   +P +
Sbjct: 62  GERLREALSQP--LSDIATALDRVAGDEPRGLLRIAVTSIAEQFLSGPLIASFAQAHPKV 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I + + +++ DI     D  +RL + I+   +           A AAP Y+     P  
Sbjct: 120 TIDVTVTDEEFDIVAAGFDAGVRLGEVIEQDMIAVPLTGDQRELAVAAPAYIAVHGTPAH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H  I +          +        P        +  N    +++  + G+GI 
Sbjct: 180 PRELVHHRCIGWRRAPNVAPYRWE-FEENGVPFDVAVEPQITTNDLRFMLRSALCGAGIT 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +   +   +   LV +++D + P    +  +P       K++A    I    R W+
Sbjct: 239 FATEETFRPFVETGELVPLLQDFLPPFPGFFLYFPHRRNMAPKMRALIEHI----RRWR 293


>gi|319761407|ref|YP_004125344.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|317115968|gb|ADU98456.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
          Length = 329

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 122/291 (41%), Gaps = 13/291 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V  +GSF  AA +L + +S++SR+I  LE   G++L  R  R + LT+ G+  +   
Sbjct: 32  FAEVVEAGSFATAARRLGMDRSNVSRRIKELEQTAGVQLLRRTTRKMVLTDLGAAFYEQC 91

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             V  ++E  +  L        G L ++    +G+  L    + F   YP + +Q+ L +
Sbjct: 92  LAVRSEVEQAKNLLLSHGDVVRGALHVSCPPAIGRQYLVPLFQTFCRRYPAVSLQITLKS 151

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             +D+  +  D AIR      S   + R L        A+P YL     P   ++L   +
Sbjct: 152 GALDLIEERIDVAIRFTNE-PSPQHVARVLGHTRWIFCASPAYLAEHGTPHLPEDLAHLS 210

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            +     +   +   + L  V         S +    Y  + Q    G G+ LLP Y+  
Sbjct: 211 WLGMRARMELQLRKESALHRV------VLRSRVACPDYALLGQMAHDGLGVCLLPVYVAS 264

Query: 251 DN---PNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +     LV+++ D     TP  T+Y      + ++ ++KAF  F+    +
Sbjct: 265 HDLAQGELVQVLADYQIEPTPGSTLYAITLPGIHSSPQVKAFVQFLAETVQ 315


>gi|161521509|ref|YP_001584936.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352322|ref|YP_001947949.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345559|gb|ABX18644.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336344|dbj|BAG45413.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 306

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR I+ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVELRSFTRAADMHGLARPVVSRAIAELEARFGGRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L+  + E Q  + +P G LR+        N     +  F   +P 
Sbjct: 61  TAERIYERCAAVLDELDALEAEAQTQTREPDGLLRLVAHTTAALNQFVPLIAGFKAAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I + L  + +D+  +  D  I     + S + I R +  I     A P YL+    P 
Sbjct: 121 VRIDVTLTERPVDLVGEGYDIGIVAPYMLSSDTTIVRLIARIPFVIVATPAYLRAHGRPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  +     + +    F     V   +  P    +  NS +   +  + G GI
Sbjct: 181 TPADLVDHPFVPLSPSLRRPALSFRVDGDV---LTLPLRFDISSNSPVFNREMVMHGFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +++    +  LV+++ D         +   Y        K+KAF ++
Sbjct: 238 GIVPRTLIETELASGALVQLLGDADLVDGCVELKLAYANRSLLPAKVKAFIDY 290


>gi|116692884|ref|YP_838417.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116650884|gb|ABK11524.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 328

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 124/297 (41%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 31  IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 90

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 91  EAALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPLLAQLRRDHP 150

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P Q + L+ R++  I +  YA   YL +   P
Sbjct: 151 GLVIELVPTDRIQDVLKREADIAVRMAPPAQDA-LVARRVGEIEVGLYARDDYLAHHGAP 209

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I  L  H LI F  + P     F   A    P+ +     L+ +S L+ +     G G
Sbjct: 210 ATIDALAHHTLIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYG 264

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I      + K +  LVR++ D +      +    E L+ + + +A  + +    R +
Sbjct: 265 IGFCQSALAKRDARLVRVLPDALGMRLDTWVVMHEDLRTSPRSRAVFDALANGLRAY 321


>gi|78062987|ref|YP_372895.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970872|gb|ABB12251.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 304

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 127/299 (42%), Gaps = 7/299 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LT+ G
Sbjct: 3   SLDRFAVFRAVVEAGSFTAAATALNQARAAVSFNVKQLEAELGVTLLTRTTRRVELTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++    V  + E    E++       G LR+ +T++    +L   L  F   +P ++
Sbjct: 63  ERFYQRCLRVLEEAEGAIDEVRGEHGGMQGILRVTSTVEYAARVLAPMLHAFTARHPALR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQR--KLVTIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL +      L  R   L T  + A  AP          
Sbjct: 123 VRLETHTSQADLVRDRFDVAIRLGRHEHFRDLPYRGACLATYDVLAVMAPGLPAKAGLPP 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S  +L +   +    L           A  +          + V++   + +    GS
Sbjct: 183 PASPGDLARLPQLGHSRLERIAEWTLTDPAGNEHAFRPATKPHIVVDNASVLSELARQGS 242

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ALLP+++V+D+     LV  +     P   VY  Y        K++A+ +F+  + +
Sbjct: 243 GVALLPEWLVRDDLDSGALVDALPAYRFPQQNVYALYVATRHVPQKVRAWVDFMKAQLQ 301


>gi|187929830|ref|YP_001900317.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187726720|gb|ACD27885.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 302

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 125/295 (42%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE 
Sbjct: 1   MEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEAGLGVRLMTRTTRQLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   + ++ +L     +   +S   +G LRIA   ++G   L   +   L  YP +
Sbjct: 61  GSHFYDDIAPLFERLREVHADTTAASETVAGTLRIAAPYEVGAQHLTEPVCRTLEKYPHL 120

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+ +  +  D+     D   + + + +  SSL+ R++V I    YA+P  L       
Sbjct: 121 QIQVHISWEQPDLLASGFDIVFVMVDQVLPDSSLVARRVVLIPRGLYASPALLAERPPLK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L     ++  D            A    PI  P    LQ  +     +  V G G+
Sbjct: 181 TPADLAGWPCLSGPDDASWAFRPVGEPAV--EPIEVPIQPRLQTLNAEMRARAAVRGLGV 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A +   +         LVR++ D    +  VY   P       K++ F + +  +
Sbjct: 239 ARMARSVGDTEVAAGRLVRVLPDFELTALRVYALMPARKLVPRKVRVFLDALEAE 293


>gi|241763320|ref|ZP_04761376.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241367472|gb|EER61771.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 309

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 130/293 (44%), Gaps = 4/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ +  F  V R GSFT AA  L +S  ++S  I GLET +G++L  R  R ++ TE G
Sbjct: 7   TFNDVLAFVHVVREGSFTRAAALLGVSPGALSHAIKGLETRLGVRLLTRTTRKISATEVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+   +  + +++     + E   KP+G +RI        ++L   L + L  YPDI+
Sbjct: 67  ERLYANVASRFEEIDAEVAAVSEMRDKPAGTIRITAAEHAADSVLWPKLSKVLHDYPDIR 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    DI     D  +RL   +    +  R    + M    AP Y     +P + 
Sbjct: 127 VEINVDYALSDIVSQRFDAGVRLGDQVAKDMIAVRISPDLRMVVVGAPSYFAQHPKPATP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN I         +  ++      + I          NS   +++  +   G+A 
Sbjct: 187 HDLAQHNCINLRLPTHGGLLPWD-FDRHGKEIKFRVDGQWVFNSTTRMVRAALADYGLAF 245

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +P+ +V ++     LVR+++D   P    YF YP  L+ +  +      +  +
Sbjct: 246 VPEDMVLEHLAAGRLVRVLDDWCEPYPGYYFYYPSRLQPSSAMSVVVEALRHR 298


>gi|150377883|ref|YP_001314478.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032430|gb|ABR64545.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 299

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 129/296 (43%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF      GSF  AAE L LS   + + +  LE  +G++L  R  R  +LTE
Sbjct: 1   MDRLTSMAVFVKAVDLGSFAAAAEALDLSGPMVGKHVRFLEDRLGVRLINRTTRRQSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  + +       +   +PSGKLR+   +  G++ +   L E    Y  
Sbjct: 61  FGCVYYERCRVVLAEAQAADALAADQLSEPSGKLRVTMPVHFGRHCVIPVLLELARRYQA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   ++ ID++ D  D +IR       + LI R++    M   A+P YL+    P 
Sbjct: 121 LELDLSFSDRLIDLAEDGYDLSIRTGLLEDRAGLIARRVARQPMIVCASPAYLEPHGYPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++++L +H  I +    P  +  + +     RPI    +    ++   +I    + G G+
Sbjct: 181 TVEDLSQHAAIVYRRSGP--VPPWLFPREGQRPIEVTPLHRFSLDDLDAIADAAMAGMGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LP ++V+   +   LVR++ +     +  +  + +      K++   + +  + 
Sbjct: 239 AWLPLWLVRNRIEEGRLVRLLPEQAPFLYDCHALWLQTPHLPLKVRVAIDALAAQL 294


>gi|167032298|ref|YP_001667529.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166858786|gb|ABY97193.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 309

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 133/300 (44%), Gaps = 13/300 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R F  V  +GS    A  L LS +++S+ ++ LE  + ++L  R  R + LT
Sbjct: 1   MDL-LNAIRCFIKVVEAGSIAAGARNLGLSPAAVSQNLARLEGHLRVRLLSRTTRSMALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G++ +     +   L   +  +     +P G+L IA+T   G+++L   +  F   YP
Sbjct: 60  PAGTQYYERVKHIDRDLALAEQAVTTPDSEPQGRLCIASTSAFGRHVLAPLIPAFSARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+LI  ++ ++ + +  D ++R+   ++   L+ R +  I     A+P YL +   P
Sbjct: 120 LLSIELITTDRRVNHAREDIDVSLRIAPQLEDQ-LLARHIARIPFICCASPGYLHSAGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + + L  H  + F   +      + ++    R   E   S L  +   ++ Q  +   G
Sbjct: 179 ATPESLLTHRCLVFRYPVDGRFLRWGFVRDGLRFDAE-FGSVLISDDIDALTQMALHDGG 237

Query: 241 IALLPDYIVKDN---PNLVRIME-------DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA L ++IV+ +     LV + E          T    +Y C  +    T K++ F +++
Sbjct: 238 IARLAEFIVRPHLASGALVPLFEFSDSGQAYAQTEPMDIYLCLADRFAMTTKVRVFMDYL 297


>gi|78063769|ref|YP_373677.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971654|gb|ABB13033.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 305

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 126/271 (46%), Gaps = 8/271 (2%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +LH+++S++ + ++ LE  +G+ LF R  R  +LT++G+  +        +++  +  L+
Sbjct: 26  KLHITRSAVGKSVARLEERLGVVLFQRTTRSQSLTDEGALFYDHCLRAMEQIQAGEALLE 85

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
               +  G+LR++     G   +   L E    +P++ + L   ++ +D+  +  D A+R
Sbjct: 86  TGKWQMKGRLRVSMPTLFGHLCVAPILIELAKAHPELDLDLSFSDRSVDLVEERFDLAVR 145

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
           +     SS L+ R L    M   A+P YL  C EP + +EL++H  + +     +  +  
Sbjct: 146 VGTLPNSSELVARPLGEHRMAFCASPAYLSRCGEPTTYEELERHKALAYT----RFGQVH 201

Query: 206 NWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVKDNPN---LVRIMED 261
            W   VD    E + +  L  +   ++M   V   GIA LP ++V+D      L  ++ D
Sbjct: 202 RWRVFVDGQRVELQPAVRLLSDDLSALMDAAVADLGIAWLPYWLVRDALRGGVLRELLPD 261

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                F +   +P  L    K++A  + +  
Sbjct: 262 RPGVIFPIQAVWPYTLHLPLKVRAAVDALLE 292


>gi|83717998|ref|YP_440348.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651823|gb|ABC35887.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 375

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 132/293 (45%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +     V  SGSF+ AA +L  ++S +S ++  LE  +G  L  R    L LTE G 
Sbjct: 66  FSDMSTLVAVVESGSFSEAARRLGTTKSIVSHRVQQLEKRLGCALLTRGRP-LQLTEPGR 124

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  +  +LE  + E+QE+     G LR+        + L   L  F   Y  + +
Sbjct: 125 NFFERSRILLQELERMEDEVQEAGASLHGTLRLTVPATFVTHRLAPLLARFAAKYQALCV 184

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +++  ++   + D AIR+ + +  S+L+ R L   H    A+P YL     P    
Sbjct: 185 EVEAEDRLSNLQDGHFDIAIRIGR-LADSNLVARPLCANHHLICASPAYLARRGVPAHPA 243

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL  H+ + + +  P  M    W   +D      R+   ++ +S   ++   + G G+A+
Sbjct: 244 ELLHHDGLIYLNREPNGM----WNLPLDGAQQSFRVRTQMRSDSGHQLLAGALAGLGLAI 299

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP ++  D     +LV ++ D I P   +   Y + ++ + +++A   F+  +
Sbjct: 300 LPTFLAADALLAGDLVPVLTDHIPPGGQISALYRKTIRTSPRIQALIEFLVDE 352


>gi|270264835|ref|ZP_06193099.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041133|gb|EFA14233.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 305

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 127/296 (42%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSGFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ +   D  D AI   +      +   +L   ++    +P  L          
Sbjct: 126 RIQAVDREEEKLADDVDVAIFYGRG-NWPGVRAERLYAEYLLPVCSPSLLTGEHALKVTD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L  H L+             +WLA   R +G   I+  Q    +    ++Q  V G G+
Sbjct: 185 DLAYHTLLH-------DTSRRDWLAYT-RQLGLQHINVQQGPIFSHSAMVVQAAVHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+ + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 237 ALVNNVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|239816244|ref|YP_002945154.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802821|gb|ACS19888.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 316

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 135/300 (45%), Gaps = 10/300 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+ + GS+T AA +L +S++++S++I+ LE  VG+ L  R  R + LTE G 
Sbjct: 10  WMHLHWLIVLGQQGSYTAAAARLGVSKAAMSQRIAELERAVGVTLVRRTTRSMRLTEAGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T E + ++  + ++ Q+ + +P G +R+   + LG+  L   L +FLL +P I++
Sbjct: 70  QLVDQTREPFEQIAHSFLQAQDHAGEPRGLVRVTAPVALGRQQLLPRLADFLLAHPSIRV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++   ++ +  D A+R       +  +  +L        A+  YL+    PL+  
Sbjct: 130 EMELSDRLSSLATEGFDLAVRHAASPPDTH-VAWRLCDTRSVLVASRAYLRRKGTPLAPP 188

Query: 185 ELDKHNLITFGDLIP---KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            L +H+ + +           E     A     +  P    L  N+  ++      G GI
Sbjct: 189 MLTEHDCLHYPRGQETNVWSFERRGGRARHAERVTVPIAGPLAANNSEALRDAAQAGLGI 248

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ALLPD+  +       LV ++ D          +Y   P +L     +  F + +    +
Sbjct: 249 ALLPDFSAQSGLQAGKLVEVLPDWQPTGAFADQIYAIRPYSLHIPRAVNLFVSHLRETLK 308


>gi|152985332|ref|YP_001348695.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960490|gb|ABR82515.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 311

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V   G F  A  ++ + +S +SR+I+ LE  + ++L +R  R L LT
Sbjct: 1   MPHDLNDLYYFAKVVECGGFAAAGREIGIPKSRLSRRIAELEERLQVRLLHRTTRKLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +  +    +  + E     + E SV+P G+LR++  + +  + L   L  FL  +P
Sbjct: 61  EVGERYLQHCRNLLLEAEMADQVIAELSVEPRGRLRLSAPVAMASSNLADLLPRFLERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++++L N+ +D+  +  D A+R+R+   +  +L+ R+LV       AAP  +   R 
Sbjct: 121 LVQLEILLTNRRVDLLNEGVDVALRVREIGDEDPALVCRRLVPATTQILAAPTLI-GGRR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                +L     +   +   K       +          R   L V+ +L   +  + G 
Sbjct: 180 LEHPDDLADLPFLGAIENDRKVHATL--IGPDGSRYHLAREPRLGVDDFLLRKKAAIAGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ L+P+          +L+RI+     P  T+   Y         ++A  +F+    +
Sbjct: 238 GVTLMPEGYCDKELAEGSLIRILPHWTLPQSTLQAAYLPRSSQVPAIRALLDFLVEALQ 296


>gi|34495597|ref|NP_899812.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34101452|gb|AAQ57821.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 294

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 10/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  +AR GS   A  QL LS S++ + ++ LE  +G +L +R  R L LT +G +  
Sbjct: 7   IELFAQIARQGSLVAAGRQLGLSASAVGKGLARLEQRLGARLVHRSTRRLALTAEGQQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + E  + ELQ+    PSG+L++         LL  +L +F+  YP + + L 
Sbjct: 67  ARCLRILEEAEAAERELQQGLAAPSGRLKVGVPH--ESGLLTPHLADFMRRYPQVALDLD 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ +D+  +  D  +R  +P   S L  R+L +  M   A+P YL     P + ++L 
Sbjct: 125 YSDRLVDVIGEGFDVVVRGGEPG-DSRLAARRLGSYRMRLLASPGYLAEYGRPQTARDLQ 183

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +   +P   +   W L   +     P +S    N+  ++++    G GI  LPD
Sbjct: 184 RHRCLHY--RLPHSGKLLPWPLVGAEGEDASPPVSA-SCNTGEALIELAARGMGIVCLPD 240

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + V+       L  +    +  S  +Y  +P       +L+AF + +  + 
Sbjct: 241 FSVRRELAAGALALLDAPQVARSGNMYLLWPAMPAMPPRLRAFIDHMAERV 291


>gi|88859488|ref|ZP_01134128.1| transcriptional regulator lysR family protein [Pseudoalteromonas
           tunicata D2]
 gi|88818505|gb|EAR28320.1| transcriptional regulator lysR family protein [Pseudoalteromonas
           tunicata D2]
          Length = 296

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 135/290 (46%), Gaps = 11/290 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+  R F  V + GS + AA  L  +Q ++ R I+ LE  + I LF R   GLT TE
Sbjct: 4   NIGWELYRSFLRVMQEGSLSAAARALGSTQPTVGRHIAQLERALNITLFIRAQGGLTPTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             + L    +E+    E  +           G +RI T+  +G  +L     E + L+P 
Sbjct: 64  AANALLLPATEMASLAEAMERVACSQGDGIQGTVRITTSDVIGTEILPTIFAEMVKLFPK 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L +K  D+    AD AIRL +P Q+  LI R++  I +  +A   YLK    P 
Sbjct: 124 ITLELVLSDKAQDLLNREADIAIRLFRPTQTQ-LIARRIGNIDVGFFAHKEYLKTQGTPT 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPI---GEPRISCLQVNSYLSIMQYCVLG 238
           ++ +L++H LI F  +        N++ T ++ +    +    C + +S ++ +     G
Sbjct: 183 TLADLNEHRLIGFDKVT-------NYIRTAEKTLPFSVDKNNFCFRTDSNVAQLALIRAG 235

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +GI +    +   + NLVR++ D        +    E L+ +   KA  +
Sbjct: 236 AGIGICQVGLASQDKNLVRLLSDDFNFEMDTWVTMHEDLRKSPACKAVFD 285


>gi|107102673|ref|ZP_01366591.1| hypothetical protein PaerPA_01003738 [Pseudomonas aeruginosa PACS2]
          Length = 271

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/271 (23%), Positives = 122/271 (45%), Gaps = 10/271 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ S++S+ I+ LE  +G +L  R  R L LT +G   +     +   LE  +      +
Sbjct: 1   MTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCTFYERGVRILADLEEAER-CASEN 59

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             P G+LR+   +  G + L   + EFL  +P++ + ++L ++ +DI     D A+R   
Sbjct: 60  AAPRGRLRVNANVPFGHHFLLPLVPEFLAQHPEVTLDIVLTDEVVDILEQRTDVAVRAG- 118

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P++SSSL+ RKL +  M    AP YL     P + Q L  HN +    +  +       L
Sbjct: 119 PLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQALLGHNRLGANYVRTRSGWP---L 175

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITP 265
                 +  P     Q +   ++ +  V G G+A L  + V+++     L+ ++E     
Sbjct: 176 RDAGEELVVPLSGNAQASDGEALRRLAVAGLGLARLAAFQVREDIAAGRLIPVLEAYNPG 235

Query: 266 SF-TVYFCYP-EALKNTGKLKAFRNFIFLKA 294
               V+  Y  +      +++AF +F+  + 
Sbjct: 236 DLEEVHAVYVGQGGYLPLRVRAFLDFLAERV 266


>gi|107023416|ref|YP_621743.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116690498|ref|YP_836121.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105893605|gb|ABF76770.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116648587|gb|ABK09228.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 300

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 141/300 (47%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M FD   L    V   V  +G+F  A E + L+Q ++SR ++ LE  VGI++F R AR +
Sbjct: 1   MGFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT++G + +   + +   +E   ++  +S  +  G+LR+      G  +L   + EFL 
Sbjct: 61  TLTDEGRRFYEAVAPLLAGIEEAALDAGQSKARVRGRLRVNVDGTFGHYVLAPRMAEFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+ +++ + ++  D+  D  D A+R   P + SS   R L+   +   A+  Y+   
Sbjct: 121 RFPDLSVEISVRDRMGDLVADGFDVAVRFGIP-EPSSYRARLLLETRVLTCASAAYVARH 179

Query: 178 REPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYC 235
            EP   ++L   H  +   D  P     + W     + +    +   L VN    ++  C
Sbjct: 180 GEPRHPRDLADGHRCVLIRD--PVTGRPYEWEFHRGKEVVPVDVAGRLTVNDTGGLLGAC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G GIA L +   ++   +  L +++ +    +F +Y  +  +   + K++ F +F+  
Sbjct: 238 LGGVGIAQLLELYAREILADGRLAQLLPEWADETFPLYAYHHASNLVSAKVRVFLDFVRE 297


>gi|38638062|ref|NP_943036.1| putative regulatory protein [Ralstonia eutropha H16]
 gi|32527400|gb|AAP86150.1| putative regulatory protein [Ralstonia eutropha H16]
          Length = 308

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 126/305 (41%), Gaps = 14/305 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D    F  V  SGSF +A+ +L + +S++SR+I  LE +V  +L  R  R ++LTE 
Sbjct: 1   MELDAYLFFATVVESGSFMNASLKLGIDRSNVSRRIRKLERDVEAQLVRRSTRRMSLTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  ++E     L        G LR++    +G+  L     EF  LYP +
Sbjct: 61  GEAFYAQCAVIRAEVERADELLHTFGTSIRGPLRVSCPPAVGRLYLTAMFAEFCNLYPKV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +      +D+  +  D A+R+         + R L  I     A P YL+    P++
Sbjct: 121 SLSVSFKGGAVDLMENDLDLALRVTND-PGEHCVARALGPIEWMLCANPEYLERHGRPVT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H  +     +            V R   +P    L+ + Y  + +      GI 
Sbjct: 180 PEDLASHTCLGVRTRV-GLEYVREGSDLVHRVSIQPH---LECSDYGFLGEMAAAKLGIG 235

Query: 243 LLPDYIVKDN---PNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFI---FLK 293
           LLP Y+  ++     L  ++ +      P  T+Y           +L+AF +F+   F +
Sbjct: 236 LLPSYVAVEHLQSGRLETVLNEYRLTRSPGSTLYAITLPNRYTPPQLRAFIDFLKSRFEQ 295

Query: 294 ARDWK 298
              W+
Sbjct: 296 GLPWE 300


>gi|296783892|gb|ADH43111.1| transcriptional regulator [Serratia marcescens]
          Length = 300

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 131/289 (45%), Gaps = 11/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VAR GSF+ AA +L +  SS+ R I  LE+ +G  LF R  RGL LT+ G  
Sbjct: 8   EHLPIFLDVARLGSFSAAARRLGMVPSSLVRHIDALESALGAALFVRSTRGLLLTDAGEL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +   +     EL   +  P G LRI+     G+  +   L      +P + + 
Sbjct: 68  LLTRAASLMADITGIHAELSALNETPQGTLRISCLPTFGKTYVLPLLPTLAERHPQLSVD 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D + +  D A+R+ +  + S+L   ++        A+P Y+     P  ++ 
Sbjct: 128 LDLTERQTDPTQERLDAALRIGEQ-KDSALYASRIAAQRWVMCASPAYVARYGLPSDLEA 186

Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H LI  +    P C     W   +D  +       L+ + + +  Q  +LG GIA L
Sbjct: 187 LPQHRLIARYHKQQPAC-----WAQILDAALMSRCTMALRCDDFTAQRQAALLGLGIAFL 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+++V  +     LV+++ED       +Y   P A   + +L AF   +
Sbjct: 242 PNWVVGPDLQNGQLVQMLEDPRHEQQGIYLLRPMAK-VSARLAAFTALL 289


>gi|238028822|ref|YP_002913053.1| transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878016|gb|ACR30349.1| Transcriptional regulator [Burkholderia glumae BGR1]
          Length = 307

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  V    SF  AA QL +S ++++R +  LE  + ++L  R  R L+LTE G 
Sbjct: 4   LQAMRVFTRVVDLASFNLAARQLGMSAAAVTRSVGMLEAHLNMRLLNRTTRSLSLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  KLE  +  L  +S +P G LRIA ++      L   L  +   +P +  
Sbjct: 64  EYLEGCRVIIEKLEEIESNLVRASREPRGTLRIAASMCFAAAGLGELLAAYRAQHPRVGF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +  +D+     D      + + S++L+ R L T+     A+P YL     P    
Sbjct: 124 DVTTFDTHVDMVEGGYDVCFADDRRLASATLVSRPLTTVREVVVASPAYLARHGRPAVPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L++H+L+T  D   +  E  +  A      G      L  +    +    +   G+ALL
Sbjct: 184 ALNEHSLLTVSDGAARNWEFTDGDALCRIVTGH----ALAASGSAMVRLAALAHLGVALL 239

Query: 245 PDYIVKDN---PNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P+ +V  +     LV ++E          +   YP     + K+++F +F   + R
Sbjct: 240 PEPLVAGDLVRGELVALLEGYPVNGGPRGISILYPGRHYLSMKVRSFVDFAVGRYR 295


>gi|9967137|dbj|BAB12272.1| probable transcription activator [Acinetobacter sp. M-1]
          Length = 288

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/284 (25%), Positives = 137/284 (48%), Gaps = 10/284 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  +  +GSF  AAE+L  + S +SR +S LE+++ + L  R  R L LT
Sbjct: 1   MKSTVEELLAFMTIVDTGSFIAAAERLGQTASGLSRSLSRLESKLEVTLLERTTRKLKLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +  +   ++   L   +  LQ+S    SG +RI +      +++   + +F   YP
Sbjct: 61  QEGQQFLQQARKILSDLNAAEEALQKSDQDTSGVIRIDSATPFILHVITPLVHKFRQCYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L  ++  ID+     D A R  + +  SSL  + +    ++  A+P YL+    P
Sbjct: 121 NIEVELNSNDLVIDLLEHKTDVAFRFGE-LHDSSLHAKLVCKSRIYIVASPEYLQRKGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L  Q L +H++I F    P  +  +      +    +P++   + +S  ++ Q C+ G G
Sbjct: 180 LQPQALPEHDVIGFTR--PTYINTWPIKIEGEYFQAQPKV---RASSGETVRQLCLRGQG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNT 280
           IA L ++ +  +     L  + ED I  S+ +++  Y +     
Sbjct: 235 IARLSEFEIWQDIREGRLEALFEDQIEHSYQSIHAVYYQQEHLP 278


>gi|332307014|ref|YP_004434865.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174343|gb|AEE23597.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 302

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 138/303 (45%), Gaps = 13/303 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +G+FT AA+  H+  SS+SR+++ LE  +G  L  R  R + LTE
Sbjct: 1   MDQLRAIRYFCKVVETGNFTQAAKAFHVPASSLSRRVADLEKSLGATLLKRSTRVVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   +++  +LE +   ++     P+G+LRI+  ++ G+ +L   L+EF   YP 
Sbjct: 61  IGRTYYAQVNDILRQLELSNDTVRSYQTVPTGQLRISAMVEFGEPILFPLLEEFSQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + L ++   ++ D  D AIR      +  ++  KL+     A A+  YL     P 
Sbjct: 121 IVLDVRLSDELSALTRDEVDIAIR-GGYAPNERVVAIKLMENQFVAVASQQYLTQFGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  H  + +       +   + +    + +  P I+    N+   ++   + G GI
Sbjct: 180 CPWELKNHKGLYYR-TPNGPLRWVSEINGQWQDVSAPPIAV--SNNGKWLLGKVLAGQGI 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPS--------FTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + P +++ +  +   + E  +TPS        F +Y  Y +      K+KA  +F+  +
Sbjct: 237 MMAPKWLLNEYLDAEELQELTLTPSVNITSSSDFGIYLLYQKQRYLVPKVKAAVDFLVAR 296

Query: 294 ARD 296
            + 
Sbjct: 297 IKQ 299


>gi|116694467|ref|YP_728678.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528966|emb|CAJ95313.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 306

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 130/290 (44%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F   A +GSF  AA +L L++S+I + I+ LE  VG +LF R  R L LT+ G   +
Sbjct: 12  ISAFVAAAEAGSFAQAAARLGLTRSAIGKAIARLEARVGTRLFVRTTRSLALTDDGQAFY 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              ++    L+  Q  L+    + +G++R++  +  G++ +   L E    +P ++++  
Sbjct: 72  ERCAQALEDLDAAQHMLEAGRREVAGRVRVSAPVVFGRHHVAPLLLELADRHPQLRLEGN 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++  D + D  D AIR  +   S  L+ R L    M   AAP YL+    P SI +L 
Sbjct: 132 FTDRLADFADDGIDLAIRSGRLPDSDMLVARPLGMQAMVLCAAPGYLRKHGTPASIADLA 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H  + +             LA  D  I  P ++  L  +   +I    + G+G+  +P 
Sbjct: 192 SHRCLVYMHGGQSVPWS---LAGPDGNIARPELAHRLGFDDIDTIAAAAIRGAGLVNVPL 248

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++V+   D   LVR++         ++  +P       KL+   + +   
Sbjct: 249 WLVREPLDRGTLVRVLPQASVIRTPLHLVWPRTRFLPHKLRVTIDLLVEA 298


>gi|300693924|ref|YP_003749897.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299075961|emb|CBJ35272.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 308

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 124/291 (42%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+ F  VAR  SFT AA QL +S+S++S  + GLE  +G++L  R  R ++ TE G
Sbjct: 5   NLNDLQAFVAVARERSFTRAAAQLGVSRSALSHAMLGLEARLGVRLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L    +    ++ET    L     KP+G +RI         +L   L+  L  YPDI 
Sbjct: 65  ARLLNTLAPRLDEIETELASLSSLRDKPAGTVRITAHDHAITTVLWPRLRTLLHAYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L +D    DI+    D  +R    +    +  R    + M    +P Y      P + 
Sbjct: 125 VELSVDYAFTDIAAARLDAGVRSGDRVDKDMIAVRIGPDMRMAVAGSPDYFATHDTPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIA 242
           ++L +H  I     +P     + W    +      R+      N+   ++Q  + G G+A
Sbjct: 185 RDLTEHRCINL--RLPTHGGLYAWEFEKNGEALNVRVDGQTIFNNTFLMLQAALDGMGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P  +++ +     LV ++ D        +  Y    + +  L      +
Sbjct: 243 YVPFDLLEPHIAAGRLVPVLHDWWPQFPGYHLYYASRRQVSPALALVIEAL 293


>gi|260466907|ref|ZP_05813090.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029303|gb|EEW30596.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 309

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 8/281 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
            SFT AA ++    + +SR++  LE  +G++L +R  R ++LTE G++       +   +
Sbjct: 23  RSFTRAAARVGRDATILSRRLQSLEERLGVRLLHRTTRSVSLTEAGAEFLVRVRAILASV 82

Query: 78  E-TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136
           +         +   P G LR+A     G+  +   L +FL  +PD++I+    N+  D+ 
Sbjct: 83  DEAEAAASAHAGGGPRGLLRLALPGTFGRMWIGPLLPQFLADFPDVRIEAEFSNRFADLV 142

Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGD 196
            +  D A+RL   ++ S L+ RK+ T      AAP YL     P + Q L +H+ + F  
Sbjct: 143 AENFDVAVRLGA-LEDSRLVARKVATRRRLLCAAPTYLARSGTPETPQALLEHSCLGFSG 201

Query: 197 LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NP 253
              +    +       R +       L  +    +++  V G G+ +  D++V     + 
Sbjct: 202 F--QTFPAWEMTNREGRRVRVEVSGPLVSDDAEVLVEAAVQGVGLMMSTDWLVGRELADG 259

Query: 254 NLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LV ++ED  +     VY   P A     K +AF ++I  +
Sbjct: 260 RLVPVLEDWTLADEGAVYVVMPSAKGQAAKTRAFADWIAKR 300


>gi|209552020|ref|YP_002283936.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539613|gb|ACI59544.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 310

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 122/292 (41%), Gaps = 8/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D+L+    V   GSF  A   L    + +S++++GLE  +G++L  R  R + +T+ G 
Sbjct: 9   LDELQALIAVQDHGSFAAAGRALTRHSTVVSKRVAGLEARLGVRLIERTTRMVRITDAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L          +   +      + + SG LR+A     G+  +   L  FL  +P + +
Sbjct: 69  RLAEEARNGLAIISEAEARASSDATEVSGHLRLAVPATFGRMWIAPALPSFLHAFPKLSV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++      +D+     D A+R+ + +  SS++ R+L+       AAP YL+    P +  
Sbjct: 129 EIDFAEHYVDLVGQGYDAALRIGQ-LADSSIVARRLLDHRRVLCAAPEYLERFGVPRAPV 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H  + F  L          L+  +          ++ N   ++++    G GI   
Sbjct: 188 DLERHACLEFTRLASFPAWR---LSNAEGSETVVVRGRMRSNDGAALLEAAKAGIGIIGA 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
            +++        +L R++      S   +Y   P A   T    AF +++  
Sbjct: 245 GEWLTAGAVAEGDLCRVLPTWTLDSDGGIYLVRPSARFETAAFTAFSHWVTA 296


>gi|190890407|ref|YP_001976949.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695686|gb|ACE89771.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 323

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 12/298 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D ++ + VF  VA   SFT AA +L ++ ++IS  I  LE  VG  LF R  R + L
Sbjct: 1   MRADIFEGIVVFTRVAARRSFTAAALELGVTPAAISWTIKQLEARVGAPLFTRTTRSVGL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G       S     +E      Q  S  P G LR++    + Q L++  LK F   Y
Sbjct: 61  TEAGQVFLEQASVGVAYVEAAYEAAQRLSDNPRGLLRLSVPY-VAQTLIEPMLKGFTDAY 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI+++L+ +++ +D++ +  D  IR+ + I    +  R           +P Y     +
Sbjct: 120 PDIELELVFEDRFVDVAGEGYDAGIRIGEMIAQDMVAVRLTPASPRVVVGSPAYFAERGK 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVD----RPIGEPRISCLQVNSYLSIMQYC 235
           PL  +EL++H+ I    L    +  ++++   +    R         L VN   + +   
Sbjct: 180 PLRPEELERHSCINIR-LAGGAVYRWDFVEHTEEIGTRSFAMDVAGGLTVNGPATSLSAA 238

Query: 236 VLGSGIAL----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             G G+A     + + +++    L   +E  +  S   +  +P+  +   KL+AF ++
Sbjct: 239 QAGVGLAYNIAGVVEPLIRQ-GLLETCLETFMPTSPGFFIYFPDRKQALPKLRAFVDY 295


>gi|163758074|ref|ZP_02165162.1| transcriptional regulator, LysR family, putative [Hoeflea
           phototrophica DFL-43]
 gi|162284363|gb|EDQ34646.1| transcriptional regulator, LysR family, putative [Hoeflea
           phototrophica DFL-43]
          Length = 301

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 128/294 (43%), Gaps = 6/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSFDW+++R F   A  GSF+ AA  L  +Q +I RQISGLE  +G+ LF R  RG TLT
Sbjct: 6   MSFDWNQVRAFLATAEEGSFSGAARALKTTQPTIGRQISGLEAALGVTLFERTVRGPTLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      +              S + +G++ ++ T  +   +L G L +     P
Sbjct: 66  EAGRDLLDHVRVMGETATLISTVAAGQSQEVTGEVAVSATDLVSAVILPGLLGDLRETAP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +++I  N   ++    AD AIR  +P +   LI R L     + YAA  YL     P
Sbjct: 126 GIHLRIIASNDISNLMRREADIAIRHVRPTEVD-LIARHLGDFRANLYAASVYLDKAGRP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + + L  H  +      P   +    L     P+       +   S +   +    G G
Sbjct: 185 RNPRALADHAFVG----SPNSDQLVTILRDKGIPVHRENF-VMSSESGIVQWELVKSGYG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  +P  + +    + +++ ++ +  F V+      LK + +++   +F+  K 
Sbjct: 240 ITFMPALLGEATSGIEKVLPELPSLEFPVWLVTHRELKTSRRIRVVFDFLARKL 293


>gi|308189025|ref|YP_003933156.1| hypothetical protein Pvag_3588 [Pantoea vagans C9-1]
 gi|308059535|gb|ADO11707.1| Uncharacterized HTH-type transcriptional regulator yafC [Pantoea
           vagans C9-1]
          Length = 312

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 125/288 (43%), Gaps = 6/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +A   S T AA +L LS +++S+++S LE  +G++L  R  R L LT +G +
Sbjct: 20  DDLAFFVRLAALDSLTAAARELGLSLAAVSKRLSQLEQRLGVQLLRRTTRRLELTPEGRR 79

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   +  +   + +  G L I  +   G+  +   +  F  L+P + + 
Sbjct: 80  YLAGARPLLDQLAALEEAVSGETAQLRGTLNINASFGFGRRHIAPCVSAFAALHPQLSLS 139

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ++    + D  IR+ +P   S L+ RKL T       +P Y      P+++++
Sbjct: 140 LSLSSQPLNFLDAHMDIDIRVGEP-PDSRLVARKLRTNPRILCCSPTYAARHGLPVTVRD 198

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN I               L + ++ I +     L  N     M+  + G GI L  
Sbjct: 199 LAQHNCILLRQHDSDFTLWR--LTSGEQSISQKVRGSLITNDGEVAMRLAMDGHGILLRS 256

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  + +     L+ ++ D   P   ++  +    +   ++ AF  F+
Sbjct: 257 WWDAQHSLATGELLHVLPDWQAPDGDIFAVWQAQRQLPARIIAFVEFL 304


>gi|256114406|ref|ZP_05455131.1| transcriptional regulator, LysR family protein [Brucella melitensis
           bv. 3 str. Ether]
          Length = 308

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 7/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGPTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENSTPK 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L++H LI + + +       N        I        +V+S L  ++    G+GI
Sbjct: 194 SPEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGI 248

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 249 GILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 292


>gi|313499116|gb|ADR60482.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 300

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 123/293 (41%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A  QL + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  + E     +   S +P G+LR++  + L    L   +  FL  YP +Q
Sbjct: 63  ERYLHHCQAMLLEAEAADETVASMSSEPRGRLRVSCPVALAHAFLPDVISRFLEQYPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++L N+ +D+  +  D A+R+R    +  +L+ R+L    M   AAP +  + REP  
Sbjct: 123 LDMVLLNRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIREP-- 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL    ++   +     +  F  L    +         L ++ ++        G G  
Sbjct: 181 -DELASLPVLGAAEA--DRLVHFRLLGPHGKQQEISLEPRLAIDDFVVRNAAVRAGLGFT 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP    ++      LVR++ D   P   +   YP        ++ + + +  
Sbjct: 238 ALPSMFCEEELERGELVRLLPDWSLPGGYLQAVYPHRRGLLPAVRVWIDHLAA 290


>gi|304398513|ref|ZP_07380386.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304354018|gb|EFM18392.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 312

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 123/288 (42%), Gaps = 6/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +A   S T AA +L LS +++S+++S LE  +G++L  R  R L LT +G +
Sbjct: 20  DDLAFFVRLAALDSLTAAARELGLSLAAVSKRLSQLEQRLGVQLLRRTTRRLELTPEGRR 79

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   +  +   + +  G L I  +   G+  +   +  F  L+P + + 
Sbjct: 80  YLAGARPLLDQLAALEEAVSGETAQLRGTLNINASFGFGRRHIAPCVSAFAALHPQLSLS 139

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ ++    + D  IR+ +P   S L+ RKL T       +P Y      P ++++
Sbjct: 140 LQLSSQPLNFLDAHMDIDIRVGEP-PDSRLVARKLRTNPRILCCSPAYAARHGLPATVRD 198

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN I               L   ++ I +     L  N     M+  + G GI L  
Sbjct: 199 LAQHNCILLRQHDSDFTLWR--LTCGEQSISQKVRGSLITNDGEVAMRLAMDGHGILLRS 256

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  + +     L+ ++ D   P   ++  +    +   ++ AF  F+
Sbjct: 257 WWDAQHSLAAGELLPVLPDWQAPDGDIFAVWQAQRQLPARITAFVAFL 304


>gi|227821735|ref|YP_002825705.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227340734|gb|ACP24952.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 313

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 128/293 (43%), Gaps = 8/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + + +F  V ++  F+ AA  L++ +S +S+ ++ LE ++G++L  R  R L +TE G
Sbjct: 3   DLNDIALFAAVVKNNGFSAAARDLNIPKSKLSKHVARLEDQLGVRLLERSTRKLRVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   +   + E+     +P+G +R+   +     +L   L  F   YP ++
Sbjct: 63  RVFYEHAQGLLDGVAAVEAEIAAVRGEPTGVVRLGCPLGFTP-MLADILPGFHRRYPGVR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D A+R R  +   S LI RK   +      +P  L    E ++
Sbjct: 122 LLITATNRRLDMIEERFDVALRARDQLDTDSQLIVRKFGEVRSRLAVSPTLLARLGE-IT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +   ++  +      + +    T    +       +  + ++ + +  + G GIA
Sbjct: 181 TSNLSEMPTLSMNEQ--HGNDVWRLFHTDGGSMEIAHRPVIGCSDFVILERAAIEGMGIA 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LPD+I +       LV ++ +  + +  V+  +P         +A  +++  
Sbjct: 239 MLPDHICERAFRTGVLVPVLPEWTSGNVMVHLVFPSRQGMLPATRALIDYLAE 291


>gi|239820771|ref|YP_002947956.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805624|gb|ACS22690.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 299

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 117/296 (39%), Gaps = 13/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   AR  SFT AAE+LHL+  +ISR +  LE ++ ++LF R  R + LTE G 
Sbjct: 11  LTALPCFDAAARHLSFTKAAEELHLTPGAISRAVKHLEQQLDVQLFERGTRSVRLTEVGE 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSG-KLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   V   L+        ++ + SG  L ++T+       L   L  F   + DI 
Sbjct: 71  ---PYAKAVRDVLDQLAAATAAATARLSGSTLNVSTSDGFAGRWLVPRLYRFRQAHGDID 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++    +      D  D AIR         L    L    +    +P  LK        
Sbjct: 128 VRVSTTGRLASFHGDGIDVAIRYGAG-NYPGLTAEWLADEEVFPVCSPRLLKGPHALRKP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H LI  G  I       +WL          R S L  +SY   +Q  V G G+ L
Sbjct: 187 ADLRHHTLIRDGYPI----AWADWLERAGVKGVNAR-SGLAFDSYTFAVQAAVQGEGVVL 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               +V D+     LVR  +  +    + Y  YP       K+KAF+ ++  + R+
Sbjct: 242 GRTMLVADDLAAGRLVRPFKQALKAFSSFYLVYPPEAMRQRKVKAFKEWLLEEMRN 297


>gi|88704623|ref|ZP_01102336.1| LysR family transcriptional regulatory protein [Congregibacter
           litoralis KT71]
 gi|88700944|gb|EAQ98050.1| LysR family transcriptional regulatory protein [Congregibacter
           litoralis KT71]
          Length = 312

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 132/302 (43%), Gaps = 7/302 (2%)

Query: 1   MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+  D +    F  V     F+ AA+ L + +S +SR IS LE  +  +L  R  R   +
Sbjct: 1   MNAIDLNDYFYFVHVVEKRGFSSAAQALGMPKSRLSRHISALERRLDTRLIQRTTRQFNV 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G   +R    +  ++E  +  ++ S    SG + ++ ++ + Q  ++  L  FL+  
Sbjct: 61  TESGELFYRHARALIDEMEAAEAAIKRSKNSLSGNVVLSCSVGVAQFAVKEILARFLVDN 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           P + +   + N++ID+     D +IR    P+  SSLIQ+KL T+  + + A  Y +   
Sbjct: 121 PLVTVAQQVTNQNIDLVAAGVDLSIRGHVGPLPDSSLIQQKLATVEWNLFCAAGYQEQHG 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              S ++L  H+ ++ G   P+    ++        +    I  L+     ++ +  + G
Sbjct: 181 LIDSPEDLLNHDALSLGWQSPRG--KWSLQNYSGESVEVAIIPRLKSEDMSTLKEAAIQG 238

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            G+  LP Y  +      +L R++ D       +    P     +  ++A   F+  +  
Sbjct: 239 LGVVALPAYTCRQELNGGHLERVLTDWHAGVAQLTLLKPSRTGMSPPVEALNAFLTAELA 298

Query: 296 DW 297
           D+
Sbjct: 299 DF 300


>gi|295676667|ref|YP_003605191.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436510|gb|ADG15680.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 309

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 126/298 (42%), Gaps = 14/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  ++ F  VA  GSF  AA QL++S S ++R +S LE  +GI+LF R  R + LTE G+
Sbjct: 5   FQAMQAFVKVADVGSFAQAAAQLNVSTSVVTRHVSSLEQHLGIRLFQRTTRKVVLTEAGA 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  +LE  +     +S + +G LRI          L     E+   +P + +
Sbjct: 65  QYADGCRVLLAELEEVESRATTASREVAGDLRIVALGSFSLFRLTPLFAEYQARFPQVNL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L  K +D+     D  I     I+S SL+ R+L+  H    AA  YL     P +  
Sbjct: 125 RVTLTEKRVDLLEGGFDVGIVTEHMIRSESLVVRRLINSHAVPVAAAAYLAQAGHPRTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNW---------LATVDRPIGEPRISCLQVNSYLSIMQYC 235
           +LD+H LI         M  F               D        +   VNS +   Q  
Sbjct: 185 DLDRHRLIAAPFDTTGPMWIFRKGDGDADSASGGGDDSGESIAIDASFTVNSMIMQKQAA 244

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
           +   GIALLP  +V+D      LVR+++          V   YP       K++ F +
Sbjct: 245 LGAMGIALLPLEMVEDELRAGTLVRVLDRYAVLNGDVAVSLVYPSREFVPRKVREFID 302


>gi|264680046|ref|YP_003279955.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210561|gb|ACY34659.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 314

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 137/294 (46%), Gaps = 5/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +  F  V  +G FT AA++L +++S++ + ++ LE  +G +L  R+ R  TLT +G 
Sbjct: 7   LEGVSTFVQVVEAGGFTAAAKRLGVTRSAVGKAVARLEARLGSRLLQRNTRTQTLTAEGQ 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +    +L+  + +L    ++P G+LR++     GQ  +   L     LYP + I
Sbjct: 67  IYYERCTRALKELDAAEADLDSGRMEPIGRLRVSVPEGFGQLCVAPILLNLTRLYPQLSI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ +D+  +  D AIR+     S +L  R L T H+   A+P YL     P  ++
Sbjct: 127 DLSFGDRTVDLIEEGFDLAIRIGPLQDSGTLSARLLGTQHISVGASPAYLARHGTPSKLE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ELD H +I +         + + +A             + + ++   +I    V G GIA
Sbjct: 187 ELDGHAVIGYSHSGVVAPWNVSPVAGRGGSSDYRLQVRTQISMDDIQAIAAAAVAGYGIA 246

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P +++        LV I+ D    S+ ++  +P+A +   KL+   + +  +
Sbjct: 247 WVPCWLLSSYAKRGELVHILPDYRARSYEIHALWPQARQLRCKLRVAIDALVAE 300


>gi|206562601|ref|YP_002233364.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038641|emb|CAR54601.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 333

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+F  +    SFT AA+ L +S+++ +R +  LE  +G+ L  R  R L  T
Sbjct: 1   MDNPIRAMRIFTRIVEMNSFTRAAQALGISRATATRTVQELEAALGMPLLVRTTRALRPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   +R    +   ++  +  ++ +++ PSG LR+     +   ++   L EF   +P
Sbjct: 61  PEGDAYYRRCVSITADVDELEASIRGAALHPSGPLRVELPASVAGAIVLPALGEFHSRHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L +  +  D   D  DC++RL   +  SSL+ R+L  +     A+P YL     P
Sbjct: 121 DLELMLAVAGRAGDRIGDAIDCSVRLGA-LPDSSLVARRLGALERVTCASPAYLDLFGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            +  +L  H  I    +  +   +  ++  VD  + + R+   + V+   + +   V G 
Sbjct: 180 RTPDDLGAHRAICGSHVFGQRPAELEFM--VDDAVRKVRLDGIVSVDDEQAYLACGVHGL 237

Query: 240 GIALLPDYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ + P  +      +   L  ++      +  V   Y +    +  ++AF ++I  +
Sbjct: 238 GL-IQPTRVAAQPLIEAGRLREVLPCWQPDALAVSVVYVKRPHVSPGVRAFVDWIAER 294


>gi|114762713|ref|ZP_01442147.1| probable transcription regulator protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114544623|gb|EAU47629.1| probable transcription regulator protein [Roseovarius sp. HTCC2601]
          Length = 298

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 119/293 (40%), Gaps = 3/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L     VA   SFT AA +L++SQS++S  I GLE  +G++L  R  R +  T +G
Sbjct: 5   NINDLIALAAVAEERSFTKAAARLNVSQSALSHAIKGLEQRLGLRLLTRTTRSVAPTLEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +  + K+E   + L +S  +P+G +RI       +++L   L   L  +P + 
Sbjct: 65  EDLLATLNPCFEKIEARLLALNDSRDQPTGTVRIVAVEYAIESILWPKLSPVLKEHPAVN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ ++D    D++    D  +R    +    +  R      M   AAP Y +    P   
Sbjct: 125 VEFVMDYGYTDLASSQCDAGVRYGDQVSEGMISMRIGPDERMICVAAPGYYEAAGVPQEP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  +         +  + +       I          N+   +++  + G G+AL
Sbjct: 185 TELSDHRCVNLRLSTHGALYAWEFEDADGNEIRVKVSGQTCFNTINPVLRAAMDGHGLAL 244

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +P+ + +   +   L   ++D        +  YP   + +   +     +  +
Sbjct: 245 VPERLAQPHIEAGRLRTCLDDYCPSFPGFHLYYPSRQRPSSAFEVVLAALRER 297


>gi|73539316|ref|YP_299683.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122653|gb|AAZ64839.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 312

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 123/298 (41%), Gaps = 6/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  +  +G+ + AA +L ++++++S  +  LE E+G++L  R  R +  T  
Sbjct: 1   MDLNALRLFVDIVDAGNLSAAARKLKMTRANVSYHLKALEEELGVQLLRRTTRHVEPTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+     +  ++      +        G +R++    LG  +L   L +F   YPDI
Sbjct: 61  GAGLYEHGRNILGEVAAANALISNMGKSLQGHVRLSVPTGLGHTMLSPLLVQFKQRYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ DN+  ++  +  D A+R+      S ++  ++  +     AAP YL     P  
Sbjct: 121 LLDVVFDNRVHNLVSEDVDVALRIISTPPDS-VVATEIGEVDWVVCAAPAYLAAHPAPTV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + ELD H ++    +  K          V           L  +++  + +  + G GI 
Sbjct: 180 LAELDGHAVVCASPVGQKLKVSGLPPHGVGAREQIVLEPTLSSDNFGFLKEAVLAGLGIG 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + P Y +     N  L  +++      F   +Y         T   +    F+  + +
Sbjct: 240 IFPIYAIGTELANGTLASLLDGYHVSVFGSRLYMLTMPNRYQTLATRCLLTFLKTELQ 297


>gi|17986502|ref|NP_539136.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. 16M]
 gi|225853275|ref|YP_002733508.1| LysR family transcriptional regulator [Brucella melitensis ATCC
           23457]
 gi|256045431|ref|ZP_05448323.1| transcriptional regulator, LysR family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|17982104|gb|AAL51400.1| transcriptional regulatory protein, lysr family [Brucella
           melitensis bv. 1 str. 16M]
 gi|225641640|gb|ACO01554.1| transcriptional regulator, LysR family protein [Brucella melitensis
           ATCC 23457]
          Length = 308

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 7/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENSTPK 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L++H LI + + +       N        I        +V+S L  ++    G+GI
Sbjct: 194 SPEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGI 248

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 249 GILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 292


>gi|167923505|ref|ZP_02510596.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
          Length = 306

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 131/302 (43%), Gaps = 13/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++ +S  +  LE E+G+ L  R  R + LTE G
Sbjct: 3   SLDRFDVFRAVVEAGSFTGAANVLNQARAVVSFHVKQLEAELGVTLLTRTTRRVELTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++
Sbjct: 63  ERFYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL +  Q   L  R +   T  +   A+P  L       
Sbjct: 123 VRLETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVAR 182

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S + L +   +    L       + D +    V RP  +P    L  ++   +  +  
Sbjct: 183 IDSPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLRAFAQ 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+ALLP+++V+D+     L+  +         VY  YP A     K++A+ +FI   
Sbjct: 240 QGGGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFIKRY 299

Query: 294 AR 295
            R
Sbjct: 300 VR 301


>gi|90421976|ref|YP_530346.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90103990|gb|ABD86027.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisB18]
          Length = 304

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 112/294 (38%), Gaps = 5/294 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   L  F  VARS +F  AA +  +S SS+S+++  +E  +G++L +R  R + LTE
Sbjct: 3   DLDLRDLAAFVAVARSKNFRRAALESAVSVSSLSQRLRDIEERLGVRLLHRTTRSVALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          ++    +++     P+G+LRI         +L   +  FL  YP 
Sbjct: 63  AGEALLARVGPALRDVDAALDQVRGLRGVPAGRLRINAPAPAVDLVLAPMVTPFLQAYPQ 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++++     IDI     D  +R  + +    +             A+PHY+     P 
Sbjct: 123 IDLEIVAQTSLIDIVAAGFDAGVRYGEHLAQDMIAISLGPPERFVVVASPHYVAQHGAPK 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  I         M D+       R +       L        ++  + G G 
Sbjct: 183 QPQDLLAHRCIRIR-FESGAMPDWE-FEQAGRVVRVTPRGPLVAGYSQLAIRAALDGLGF 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               +  V+ +     LV +++D   P    +  YP   +    L A   F+  
Sbjct: 241 FAAFEGYVRADIAAGRLVSVLDDWCEPFPGPFLYYPSRRQPPPALAALIGFVME 294


>gi|126641417|ref|YP_001084401.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 282

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 116/267 (43%), Gaps = 5/267 (1%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           + L+ + +SR IS LET +G KL  R  R   LT+ G+       +V   ++  + E+  
Sbjct: 1   MDLTTAQVSRLISELETRLGTKLIQRSTRQQALTDIGATYAERCRQVISMVDEAEAEVTG 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
           ++ KP G+LR+ +    G + +   + EF   YP++ ++        D+     D ++ L
Sbjct: 61  TASKPKGRLRVLSMGSFGHHYVFPVMAEFCKHYPELTVEYTTSQYVPDLLAKGVDVSLYL 120

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
            + +  S  + R++ TI     A+P YL+    P S ++L  H  +    + P    D++
Sbjct: 121 TESLTDSRFVARRIGTIFSVLCASPAYLEKHGVPKSPEDLKNHACLRL--VNPSITPDWH 178

Query: 207 WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVI 263
            L              L  ++   ++       G+ALLP +   D   N  L  I+ +  
Sbjct: 179 LLNANGESYQIDIGGQLIADNPELLLDVVQQDMGVALLPMFSALDAVQNGRLCHILPEWR 238

Query: 264 TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P   VY   P       K +A+ +++
Sbjct: 239 SPDIGVYTLLPSRHFIDAKTRAWLDWV 265


>gi|104781998|ref|YP_608496.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110985|emb|CAK15705.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 300

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 120/293 (40%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A  QL + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLFYFARVVETGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  + E     +   S +P G+LR++  + L    L   +  FL  YP +Q
Sbjct: 63  ERYLHHCQAMLLEAEMADEVVASMSSEPRGRLRVSCPVALAHAFLPDVISRFLAQYPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++L N+ +D+  +  D A+R+R    +  +L+ R+L    M   AAP +  + REP  
Sbjct: 123 LDMVLLNRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIREPSE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L        G      +  F       R         L ++ ++        G G  
Sbjct: 183 LATLP-----VLGAAEADRLVHFRLFGPNGRQEDVALEPRLAIDDFVVRNAAVRAGLGFT 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP    +   +   LVR++ D   P   +   YP        ++ + + +  
Sbjct: 238 ALPSMFCEQELERGELVRLLPDWSLPGGYLQAVYPHRRGLLPAVRVWIDHLAA 290


>gi|107026962|ref|YP_624473.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691841|ref|YP_837374.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896336|gb|ABF79500.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649841|gb|ABK10481.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 303

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 117/295 (39%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G 
Sbjct: 9   LQCLVAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +   +  +            +L IA +  +    L   L  F   YP+I++
Sbjct: 69  QY--AAQVHHLLTQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPNFRAAYPNIKL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   
Sbjct: 127 RLIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLA--GRTLDAA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+   D   + M    W    D    + +   + +NSY  I+Q  +LG G++L 
Sbjct: 185 DLANETLLRLEDGQRQWMSWSEWFDMNDVDRQKAQPQDITINSYPQIVQMTILGQGVSLG 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             Y++    +   LVR+ E   +     Y   P         + F  ++F +A  
Sbjct: 245 WRYMIDACIEAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWLFEQAEQ 299


>gi|163758057|ref|ZP_02165145.1| probable transcriptional regulator protein, LysR family [Hoeflea
           phototrophica DFL-43]
 gi|163761122|ref|ZP_02168199.1| probable transcriptional regulator protein, LysR family [Hoeflea
           phototrophica DFL-43]
 gi|162281673|gb|EDQ31967.1| probable transcriptional regulator protein, LysR family [Hoeflea
           phototrophica DFL-43]
 gi|162284346|gb|EDQ34629.1| probable transcriptional regulator protein, LysR family [Hoeflea
           phototrophica DFL-43]
          Length = 298

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 130/286 (45%), Gaps = 8/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  VA   +F+  AE+L LS +  S+ +  +E  VG +L  R++R ++LTE G++  
Sbjct: 7   LRVFAEVAEHKNFSAVAERLGLSPAMTSKHVKHVEARVGARLLNRNSRNVSLTEAGAQYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  +L   + +L  +S+ P G LR++  + +        L  +  L P +   + 
Sbjct: 67  QTIRPLLDELAKAEAQLISNSLSPRGTLRMSMPVWMSNPAFAKLLTAYHQLNPHVTFDVD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  + I +  +  D A+R+   +    LI RKL  +     AAP +L N   P +  +L+
Sbjct: 127 LSGRKISMVEEGVDLALRVAFKL-DEGLIARKLADVTFQLVAAPAFLDNFGRPKTTGDLN 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              ++ +  +       F     VD  +    +S  +      + Q  V G G A+LP++
Sbjct: 186 NAPMLAYDQVAADGRIKFGGEDGVDVKLRPILVSANES----ILHQAAVAGMGFAMLPNW 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +D   +  L  ++  +  P   +   Y +      K+++F +F+
Sbjct: 242 AAQDDIEDGRLEAVLPMIAWPKLHIQAIYADRSYLPAKVRSFLDFL 287


>gi|332307486|ref|YP_004435337.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174815|gb|AEE24069.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 297

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 135/293 (46%), Gaps = 13/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +   V  +G F+ AA+QL    + +SR I+ LE ++   L  R  R + LT++G    
Sbjct: 10  LEMLIAVVDNGGFSAAAKQLDTQVARVSRAIAKLEQDLDCTLLNRTTRRVELTQEGLFFV 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +L   +  L+E    P+G LR+        + L   +  F   YP I+++LI
Sbjct: 70  NEVRVSLQQLNYAESRLRELKQTPTGTLRVDAASPFMLHQLTPLIAGFREAYPLIELELI 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +   ID+     D AIR+ + ++ S+L  R L    +H  A+P YL+    P++++ L 
Sbjct: 130 SNESIIDLIEKRTDVAIRIGQ-LEDSNLHARLLGNSQLHLVASPAYLQTLSAPMTLETLS 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           + ++I F           NW      P  +P    +  +S  +I Q C+ G+G+ALL D+
Sbjct: 189 ECSIIGFA----HSANLNNWPLKHRLP--KPLKPNILGSSGETIRQLCLQGNGVALLSDF 242

Query: 248 IVKDN---PNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++  +     L+++++  +        +   Y +    + ++ AF ++I  K 
Sbjct: 243 MIAKDVREGKLLKVLQGSVISPHPREQINAVYYKNTALSSRISAFLDYIKDKL 295


>gi|222084538|ref|YP_002543067.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221721986|gb|ACM25142.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 297

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 120/276 (43%), Gaps = 5/276 (1%)

Query: 17  SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76
             SF  A ++L ++ S++S  IS LE  +G++L  R  R +  TE+G  L    +    +
Sbjct: 18  HRSFRAAGKELSIAPSAVSHAISSLEESLGVRLLARTTRSVLPTEEGQTLLDRLAPALEQ 77

Query: 77  LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136
           ++    +      +P+G LRI         L+   L +FL  YPDI +++  ++   DI 
Sbjct: 78  IDIALEDTLAMRGRPAGNLRITAPRFASDLLMAPRLGDFLNTYPDITLEIANEDGFSDIV 137

Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGD 196
            +  D  IRL + ++   +  +    I      +P Y +N   PL  ++L  H  I    
Sbjct: 138 KEGFDAGIRLEESVEGDMIAVKVSPDIRTVIAGSPAYFENNPRPLHPRDLVHHRCIK-RR 196

Query: 197 LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NP 253
                +  + +       I       + +   L+++   V G+G++ L D  VK    + 
Sbjct: 197 FTDGSIYRWEFEKDGRELIVAVDGPLIVIEDRLAVL-AAVNGAGLSYLFDIRVKQELADG 255

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +L+R++ED   P       YP   +    L+AF +F
Sbjct: 256 SLIRVLEDWCPPYPGFCIYYPSRRQMRPALRAFIDF 291


>gi|172063716|ref|YP_001811367.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996233|gb|ACB67151.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 299

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 3   IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 63  KAALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPMLAQLRRDHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+     D A+R+  P Q + L+ R++  I +  YA   YL     P
Sbjct: 123 GLVIELVPTDRIQDVLNREVDIAVRMAPPAQDA-LVARRVGEIDIGLYARDDYLARNGTP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H LI F  + P     F   A    P  +     L+ +S L+ +     G G
Sbjct: 182 STTGELAHHALIGFDTVTP-----FIRSAGRGMPSWKRDAFALRTDSNLAQLAMIRAGYG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I    + + K +  LVR++ D  T     +    E L+ + + +A  + +    R +
Sbjct: 237 IGFCQNGLAKRDARLVRVLPDGPTMKLETWVVMHEDLRTSPRCRAVFDALANGLRAY 293


>gi|167586305|ref|ZP_02378693.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 327

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 122/287 (42%), Gaps = 8/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA QL +S + ++R I+ LE  +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEQQSFRRAAHQLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTEAGVRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  +  +P G LRI  +  L    L   +  F   YP +++QL 
Sbjct: 67  DGCRALLEEFDHLEASVVHAVREPVGTLRIVASGTLSPLALTPLVNGFQRRYPQVRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  +        + +LI   L    + A AAP YL+   EPL   +L
Sbjct: 127 VAEGPLDVLDAGYDVGVVTGNRFDGNPALIGHALSPNTLVACAAPAYLQRRGEPLVPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +       +    + ++   D            VN    +    V GSGIA+LP+
Sbjct: 187 PRHDWVALAP--HQHAPAWRFVGPDDAVHPVTVRPVYTVNQLSLVQAATVAGSGIAVLPE 244

Query: 247 YIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRN 288
            +V    D+  LVR++       P   +   YP       + ++F  
Sbjct: 245 NVVADALDSGALVRLLPGYRIDDPDTQLSLVYPNRQFVPARTRSFVE 291


>gi|187920495|ref|YP_001889527.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718933|gb|ACD20156.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 301

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 129/299 (43%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   +R    +  SGS   AA +L LS S++++++  LE ++  +L  R AR L  T
Sbjct: 1   MN-DSADIRFLLTLRESGSLVAAARKLGLSPSAVTQRLQQLEKKLSAQLVNRTARRLQFT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+ L    +++  + +T   +LQ       G L+I   +  G+  L   + +F    P
Sbjct: 60  EEGTLLCERGADLVQQFDTLFEDLQMRRGGLVGTLKINAPLGFGRRHLAPVIADFQQRNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + L L +K +  +MD  D  + + + +  S+LI   +        AAP  ++    P
Sbjct: 120 DIDVALTLSDKPLTETMDRFDIVVHIGE-LPVSNLIGYTIAPNSRFVCAAPALIRRIGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            S +EL K   I   +      +   W  +  R     R+S  L  N    I Q+   G 
Sbjct: 179 DSPEELSKLPCIVLRE---NNEDVSLWQFSKGRTRRSVRVSAHLSCNDGDVIRQWACEGR 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ L  ++ V ++     LVR++     P   V     +      + + F  ++  + R
Sbjct: 236 GVILRSEWDVAEDIAKGKLVRLLPGWKAPDADVMALTHQRAGLPARTRHFMQYLQSRFR 294


>gi|50084417|ref|YP_045927.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49530393|emb|CAG68105.1| putative transcriptional regulator (LysR family) [Acinetobacter sp.
           ADP1]
          Length = 309

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 128/292 (43%), Gaps = 7/292 (2%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA  L ++ S++S+QI  LE E+ + L +R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARNLGITTSAVSQQIRSLEQEMDVTLLHRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  +I + E      G LRIATT +LG   +   L  ++  +  
Sbjct: 62  AGQAFFHSCQEMLAAAERGKIRINELRDDLIGDLRIATTPELGALHVVPALSHWMSAHRG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +    D++ ID+     D AIR+   I   SL    +V +     A+P YL       
Sbjct: 122 LSVHFEADHRYIDLIEGRIDIAIRMSPRIDDQSLNAIPMVRVDQILVASPSYLNQSAPIS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H+LI    +       F  L+T    I     + LQ N+       C  G G+
Sbjct: 182 RPEDLMNHDLIPVNLMSGYQHLSFQHLST-GESIDIEMKNRLQTNNVFIAKSLCQHGHGV 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +    V+    N +LV ++ +   P+FT+Y    +  +   K+    + +
Sbjct: 241 ARILYLDVQKELINGSLVEVLPEWNLPAFTLYALTQKREQQPMKIHRCLDAL 292


>gi|85706936|ref|ZP_01038026.1| putative transcriptional regulator, lysR family protein
           [Roseovarius sp. 217]
 gi|85668547|gb|EAQ23418.1| putative transcriptional regulator, lysR family protein
           [Roseovarius sp. 217]
          Length = 286

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 7/286 (2%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
             GS T     L L+ +  S+++  LE  +G++LF R  R +  TE G+  +     V  
Sbjct: 2   ELGSITSGGRDLRLTPAVASKRLKELEKRLGVRLFNRTTRSMMPTEVGTVFYEEARAVLL 61

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
            L+  +  +   S  P G +RI   + +G+ ++   + EF   YP+ +I++ L ++ +DI
Sbjct: 62  ALDHAEARVASFSEVPRGAIRITAPLGVGRRIVAPLVPEFTDRYPETEIRMRLSDRKVDI 121

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK-HNLITF 194
             D  D A  +  P + S++  RK         AAP YL     P +  +L   HN +  
Sbjct: 122 LADGQDVAFFVGDPGE-STMKLRKFADCDRVLCAAPSYLTRAGIPRTPDDLMHGHNCLLL 180

Query: 195 GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN-- 252
               P+  E F  L T               +    +  + + G GI   P + ++++  
Sbjct: 181 --RYPRSPEYFWTLRTDMGARRLDVQGKYDADDGDVLTDWALAGRGIVNKPRFDIREHLE 238

Query: 253 -PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              LV ++ D           YP       K++ F  +I  + + +
Sbjct: 239 SGRLVEVLPDTPPMPTIFGCLYPHKKLQDPKVRLFVEYIARQCKRY 284


>gi|239820117|ref|YP_002947302.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239804970|gb|ACS22036.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 295

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 130/290 (44%), Gaps = 11/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +GSF+ AA  L  S S++S+ ++ LE   G++LF R  R L+LT++G+  +
Sbjct: 10  LVAFASAVEAGSFSAAARTLGTSPSAVSKSVARLEQRFGVRLFQRSTRVLSLTQEGAAYY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+     ++ +     G LRI    DLG+ LL+  +  FL  +P++++++ 
Sbjct: 70  ERIAPLLRALDQAGDAMRPA-GIAQGVLRITAPGDLGRILLEPVIGRFLPRHPELKLEMS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D AIR  + +  S L  R+L  + +   A+P YL     P SI+ L 
Sbjct: 129 LADRHVDLIREGYDIAIRAGQ-VADSDLTARRLADLPLVLVASPVYLARRGTPDSIEALH 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + +          F      D  +  P       ++ +++    +   GI  +   
Sbjct: 188 SHAHVRYMLGGKAFPIRF-----ADGSVLNP-AGVFDTDNSVALRIAALGDLGIVQILRL 241

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V+D+     LV ++     P  TV   +    +   + + F  F+  + 
Sbjct: 242 FVQDDIDAGRLVPVLPSQPLPLVTVSALHAFGRQAPARARLFIEFLAAEL 291


>gi|167586983|ref|ZP_02379371.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 303

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL   PD
Sbjct: 61  EGAAFLERCRGLLAEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLADKPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 MQLSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPDYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           ++ +L KHN + F     +  ++  W    +  I   R++  L  N    + ++   G G
Sbjct: 180 TLDDLLKHNCLAFNL---QGGQNRGWYFQRNGKIVTMRVTGNLDCNDGELLHRWASEGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + +    +   L  +++D   P + +   YP+      +++ F +++
Sbjct: 237 LGWRSTWEIAAQLETGELETVLDDYALPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|269854715|gb|ACZ51387.1| putative regulator [Pseudomonas sp. NyZ402]
          Length = 309

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 124/288 (43%), Gaps = 7/288 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
             F  VA +G+F  AA QL +++S IS +I  LE  +   LF+R  R + L++ G   ++
Sbjct: 8   EAFVRVAETGNFAKAALQLGVTRSVISHRIQQLEQFINAPLFHRSTRHVRLSDVGETYYK 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             S++     +    ++E   KP+GKLRI              + EF  LYPDI+I +++
Sbjct: 68  ECSDMVANFNSLTEHMRELRAKPTGKLRIQMLPGFAIGHFGRMMAEFNHLYPDIEIDVVV 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +++ +D   +  D A ++  P+ S +LI+RKL ++      +P Y      P    +L  
Sbjct: 128 NDRVVDPIEEGFDVAFQMFPPL-SETLIERKLFSVRRLFCMSPQYAAKFGVPQHPNDLLN 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H +  +     +    F         +       ++ NS   +  Y   G  I  LP  +
Sbjct: 187 HKIAMYAGYPSRNRWVFT---HEGEQLNLSLPGQMRSNSVHLLRDYAETGVCIVCLPTLV 243

Query: 249 VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             D+     L+ ++      SF     +P   +   K++    F+  +
Sbjct: 244 ASDDLLAGRLIPVLPKYTLSSFNFSAVFPATQRRALKVRTLIEFLVER 291


>gi|262171939|ref|ZP_06039617.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|261893015|gb|EEY39001.1| transcriptional regulator [Vibrio mimicus MB-451]
          Length = 266

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 129/266 (48%), Gaps = 9/266 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +  ++I+R+I  LE  + ++L  RHAR LTLTE G + ++  S +  +L +   E+ +  
Sbjct: 2   IPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDEC 61

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
              SG++RI+   +L + ++      F+  YPDI I+L++ N+  D+     D   R+  
Sbjct: 62  RGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRVG- 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P + SSLI RK+  +     A+P YL N  +P   +EL +H L+         +  +   
Sbjct: 121 PQRDSSLIARKIGEVKDILVASPTYLANHPQPTHAEELHQHQLL-----KGYPLLKWQLT 175

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITP 265
            +    +        Q ++   +   C  G GI L+PD +++   D+ +LV+++ D  + 
Sbjct: 176 NSQGETVVNTDRGRFQASALNVVRSACSEGLGITLMPDVMLREYLDDGSLVQVLSDWSSN 235

Query: 266 SFTVYFCYPEALKNTGKLKAFRNFIF 291
              +Y  Y        K++ F +F+ 
Sbjct: 236 PRDIYMLYNHKDHQPEKVRLFIDFVI 261


>gi|239993963|ref|ZP_04714487.1| LysR family transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 319

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 132/291 (45%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L VF  VA  GS T AA +L +S S+ S  +  LE ++G+ LF R  R + L+ +
Sbjct: 1   MKTEDLSVFVKVAEVGSITTAAIKLDISSSAASMAVKRLEEQLGVALFVRSTRKIRLSPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +   +  +    L+     + E      G+LR+A + ++G+NL++  L +     P++
Sbjct: 61  GEQYLPMAKQALDTLQQGLALVTEQKQSIHGELRMAMSSEMGRNLMRELLNKVQRENPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++L + +  +D   D  D A+R   +  ++ S +   K+  I     A+P YL+   EP
Sbjct: 121 SLRLHVSDSRVDFYRDGVDVALRAMTKDAVKESQMYGFKVCNIPHVICASPDYLERNGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L +HN + +  L  +    +  +   +R +     S   VN    + ++CV G G
Sbjct: 181 TTLTDLAQHNALLY-KLYDQTHNTWELINEGER-VKVKVNSNRAVNDGDIVRRWCVDGEG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           IA      V  +     L RI+     P   ++   P     T  ++  R+
Sbjct: 239 IAKKSCIDVAGDLLSGKLQRILTGYHVPLTEMWLMLPSRHLITPAVRLIRD 289


>gi|221210883|ref|ZP_03583863.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221169839|gb|EEE02306.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 370

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 127/290 (43%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R+F  +    SFT AA  L +S+++ +R +  LE  +G+ L  R  R L  T +G 
Sbjct: 44  IRAMRIFARIVEMNSFTRAALSLGISRATATRTVQELEAALGMPLLVRTTRALRTTPEGE 103

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   ++  +  ++ ++  PSG LR+     +   ++   L  F   +PD+ +
Sbjct: 104 AYYRRCLRITADVDELEASIRRAARHPSGPLRVDLPGPVANAIVLPALGTFHARHPDLVL 163

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +  +  D+  D  DC++RL + +  SS + R L  +     A+P YL  C  P ++ 
Sbjct: 164 MLGVSVRAADMVGDAVDCSVRLGE-LPDSSFVARPLGALERVTCASPAYLDRCGVPRTLD 222

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243
           +LD+H  +  G               VD  + + R+  +  V+   + +   V G G+  
Sbjct: 223 DLDRHRAV--GSTSGSGQRAAECEFMVDGAVRKIRLDVIVGVDDEHAYLACGVHGLGLIQ 280

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P  + +   D   L  ++      +  V   Y +    +  ++AF ++I
Sbjct: 281 PPRAVAQPLIDAGLLREVLPQWRPAAVPVSAVYVKRPHVSPGVRAFVDWI 330


>gi|152986654|ref|YP_001348202.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961812|gb|ABR83837.1| trancriptional regulatory protein, LysR family [Pseudomonas
           aeruginosa PA7]
          Length = 322

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 122/292 (41%), Gaps = 6/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD ++L ++  V   G F  A   L + +S++SR+++ LE  +G++L  R  R   +TE 
Sbjct: 7   FDLNELFIYAKVVEHGGFAPAGRVLGIPKSTLSRKVAQLEARLGVRLLQRSTRQFQVTEI 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R    +  + E  +  ++++  +P G +R+  +  L    L   L  F+  YP +
Sbjct: 67  GQAYYRHCVAMTVEAEAAEDVIEQNRSEPCGTVRLTCSTPLLHFGLASMLARFMAQYPSV 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +   N+ +D+  +  D ++ LR  P++ S L+ + L        A+P  L   R P 
Sbjct: 127 ELYVKTFNRRVDVIAEGYDLSLSLRFPPLEDSDLVMKVLARSPQLLVASPELLARYRPPE 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     + +     +       +              L  +   S+ Q  + G GI
Sbjct: 187 LPADLSAMPYVGWER--SRLDGSLRLVGPDGSSASLNLRPQLLSDDLGSLRQAVLEGVGI 244

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             LP  +V  +     LVR++         V   +P        ++A  +F+
Sbjct: 245 GGLPSCVVGRDLAERRLVRVLPYWTPVEGMVVAMFPSRRGLLPSVRALIDFL 296


>gi|77456255|ref|YP_345760.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77380258|gb|ABA71771.1| LysR family regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 316

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 118/295 (40%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F   AR  SFT AA +L  +Q +IS+QI  LE ++G +LF R  RG+ LTE
Sbjct: 7   DLSLDLLRAFEAAARHRSFTAAAVELGTTQPAISQQIKRLEEQLGTRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS L    +     ++     +          L++AT        L   L  F   YP 
Sbjct: 67  VGSILFEQVTLGLQNIDAGLSAISTQQQHE--VLQVATDFAFAAYWLMPRLHRFHEAYPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   ++ ++     D A+               L +  +    +P  LK+C  PL
Sbjct: 125 VDVSLVTSERNHNMLRPDIDVAVLFGDGRFKQG-ESHWLFSEEVFPVCSPQLLKDCSLPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q L +  L+           D++ L         P    L+ ++Y  ++Q  + G G+
Sbjct: 184 PAQALMEFPLLHLRGENSSNWFDWSGLFRALNISTPPAPGQLRFDNYTLLIQAAIGGQGV 243

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V +      L R + +        Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWRHLVDNLLTQGLLCRPIAETTLSRLGYYVVLPQRKRRGALIQTFVDWLMAE 298


>gi|307546485|ref|YP_003898964.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218509|emb|CBV43779.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 290

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 123/276 (44%), Gaps = 6/276 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSFT AA  L   ++++S  +  LE  +G++L +R  R + LT  G +  +    +  + 
Sbjct: 2   GSFTRAAVALAWPRATVSLAVRRLEETLGVRLLHRTTRKVRLTPDGERFLQRARTLVAEA 61

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E  +   ++ S + +G+L +     + + L+   L + L  +P +Q+ L   ++ +D+  
Sbjct: 62  EELERLFRQPSEEATGRLVVDVPSRVARRLVAPALGQLLARHPRLQVVLGSSDRHVDLVA 121

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL-DKHNLITFGD 196
           +  DC +R   P+Q S L+ R+L  + +   A+P YLK    P   ++L   H ++ +  
Sbjct: 122 EGVDCVVRFG-PLQDSDLVARRLGRVALVNCASPDYLKRHGMPRQAEDLAAGHLMVGYAS 180

Query: 197 LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NP 253
                 E F  +    +       S + VN+  + +  C  G G+  +P + V D     
Sbjct: 181 PHSGREERFE-VVEHGQVRDIALASRVVVNNAENYIACCRAGLGLIQVPRFDVDDLLRGG 239

Query: 254 NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +LV ++         V   YP       ++  F ++
Sbjct: 240 DLVEVLPQSRAEGMDVSVLYPHRRHRAVRIDVFMDW 275


>gi|289627720|ref|ZP_06460674.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649504|ref|ZP_06480847.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866270|gb|EGH00979.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 302

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 133/296 (44%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  +  SGS + AA+    S +S+ R ++ LE+ +G++L  R  R + LT+
Sbjct: 1   MDRLKAMANFVRIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +  R T  +    +  +  L        G LR+   ++ GQ  +   +  FL  + +
Sbjct: 61  EGEEYLRWTRRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLCEHQN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L+++ + +  +  D A+R+   +  S+++ R+     + + A+P YL+      
Sbjct: 121 INVELNLNDQIVPLLDERLDLALRIGH-LPDSAMVARRTGATRLVSCASPGYLRTAPLLD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L +H  IT      +      +     + + +  I  L  N   +    CV G G+
Sbjct: 180 TPKSLPEHACITLASHGRQW-----YFRHQGKELIQDIIPRLVCNQVRAASLACVQGLGV 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             L  Y V D   +  L+R++ D  T    +   YP AL+ + ++KAF  +   + 
Sbjct: 235 TRLMHYQVADELADGRLIRVLTDFETADLPIQLVYPHALQLSPRVKAFVEWAIPQL 290


>gi|255320593|ref|ZP_05361771.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|255302355|gb|EET81594.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
          Length = 309

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 130/292 (44%), Gaps = 7/292 (2%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMEVILLHRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  ++ + E   +  G LRIATT ++G   L   L  ++  +  
Sbjct: 62  AGQAFFHSCREMLAAAERGKVRINELRDELVGDLRIATTPEIGAMHLVPALSHWISAHRG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +    +NK ID+     D A+R+   I+ S+L    L  +     A+P YL       
Sbjct: 122 LSVHFEAENKYIDLIEGRIDIAVRMSSKIEDSNLTAVPLARVEQILVASPSYLNQSAPIS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H+LI    +       F    T +    E R S L  N+ L     C  G G+
Sbjct: 182 RPEDLKNHDLIPINVMNNYQQFSFQHGVTSEVVDLEMR-SRLYSNNVLVAKSLCQHGHGL 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +    V+ +    +LV ++ +   P+FT+Y       +   K+    + +
Sbjct: 241 ARILYLDVQKDLINGSLVEVLPEWKLPAFTLYAIISRREQQPMKIHRCLDAL 292


>gi|291613818|ref|YP_003523975.1| LysR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291583930|gb|ADE11588.1| transcriptional regulator, LysR family [Sideroxydans lithotrophicus
           ES-1]
          Length = 301

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 136/293 (46%), Gaps = 7/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   D   +F  +A   S   AAE L + ++++SR+++ LET +G +L  R  R LTLTE
Sbjct: 5   NISADDYILFAAIAEQESLVRAAEHLGMPKATVSRRLTNLETVLGQRLLLRTTRRLTLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V  ++ T Q  ++   VKP G+LR++   D  +  L   L  F+  YP+
Sbjct: 65  FGQEFLDHCRRVAEEVATAQDFVRSQDVKPHGRLRVSMPEDYAKQNLSRALATFIESYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D+  +  D AIR+      S+L+ RK+   H   YA+P YL     P 
Sbjct: 125 IHLDLDLSSRLVDLIGERFDLAIRMGTLENDSTLVARKIDEQHFGLYASPIYLGLHPAPK 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
             +EL +H  +    ++    +   W  +  +   E      L +NS   I Q  + G+G
Sbjct: 185 HPEELLQHTTL---RMLSDQGQLIPWKLSRGKSNWEGVPPGRLALNSIGVIQQLLLDGAG 241

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  LPD    ++     LVR++ +   PS   +   P       K + F + +
Sbjct: 242 IGALPDRFTLEDVRRNRLVRVLPEWCLPSVPAWAVMPMRRYLPAKTRVFLDHL 294


>gi|238026739|ref|YP_002910970.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237875933|gb|ACR28266.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 318

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 127/301 (42%), Gaps = 10/301 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+A  GSFT AA +L +S++++S +I+ LE   G+ L  R  R + LTE G 
Sbjct: 10  WVHLHWLTVLADQGSFTGAAARLGVSKAAVSLKIAELERAAGVPLVQRTTRSVRLTEAGL 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T  +Y ++  +   ++++  +  G LR+   + L +  L   L EF   YP ++I
Sbjct: 70  RLADETRPLYDRISQSFSGVRDTGAQVRGSLRVTAPVALARQQLVPRLAEFRRRYPAVRI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++   ++ +  D AIR       +  +  KL   H    AAP YL     P    
Sbjct: 130 QLDVSDRLASLATEGFDLAIRHSAAAPETH-VAWKLCRTHSVIVAAPAYLAVRGAPAHPD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGI 241
           +L  H+ + +          F    T  +       P    L  N+   +    + G GI
Sbjct: 189 QLAGHDCLYYPRSHDSAAWTFERAGTRRQRAARVTVPIGGPLGANNSEVLRDAALDGLGI 248

Query: 242 ALLPDY---IVKDNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ALLPD+          LVR++ +          +    P A      ++AF  ++     
Sbjct: 249 ALLPDFSAVAALRAGTLVRVLPEWRPVGVFAEQLLAVRPYATHVPRVVRAFVAYLREAFA 308

Query: 296 D 296
           D
Sbjct: 309 D 309


>gi|170736718|ref|YP_001777978.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818906|gb|ACA93488.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 327

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 116/295 (39%), Gaps = 4/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R F  V ++GSF+  A+Q  ++ + +SR ++ LE    I+L  R  R + LT
Sbjct: 1   MDM-LENMRTFVRVVQAGSFSAVAKQTDVATAQVSRAVASLEAYAQIRLLNRTTRKIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +       +   ++    E + + V+P G+LR+ T   LGQ+ +      +   +P
Sbjct: 60  DSGRRYFERLQSILGDVDQANAEARNALVRPYGRLRVHTMPGLGQSHVTALAVAYRARFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I++    +  ++  +  D ++     +  S+ I     T      A+P YL     P
Sbjct: 120 EVAIEMTYSQRMPNLVEEGYDVSVVTAASLPDSACIAHSCGTSFSVLVASPAYLARHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +H  +          E                 +    N+  ++      G G
Sbjct: 180 SAPADLARHTCLRLDTPAEANNEWLLHGPGGQTASHAVTAAPFHANAPEALSIALRAGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L  Y   D+     LVR++ D       VY  Y        K++ F   + L
Sbjct: 240 IGSLAIYSAIDDLRSGRLVRVLPDYRLTMLDVYAMYASRRFLDAKVRTFVEHLRL 294


>gi|206578977|ref|YP_002238412.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|290509438|ref|ZP_06548809.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206568035|gb|ACI09811.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|289778832|gb|EFD86829.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 311

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 127/295 (43%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +     L +F  V  + +F+  A +  +S S +SR I  +E  +G +LFYR+ R +  TE
Sbjct: 6   NISIRALLIFIDVYETQNFSVVARREGISASQVSRVIHQMEDVLGQQLFYRNTRAIIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R    +   +E  + EL E +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGHLFIRYARAMTGSMEEARRELNERTLEPSGMVRINAPVFFGQRHVAPALPGLTERYPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L +  ID   + AD   R+   +  S+   R       H  A+P Y++      
Sbjct: 126 LSIELTLTDDYIDPHREPADVIFRIG-VLTDSAFHARVFGQQFYHLAASPDYIRRHGMLG 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S +EL +H  + +          +      +  +  P    +  N+  +++   + G GI
Sbjct: 185 SPEELARHQCLVYRG--SSGPNQWLLRRHGEEWVHYPVSPLMSSNNAETLLIAALGGMGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD+++ D   +  LV ++ +    + T    +   YP A      ++A  ++
Sbjct: 243 VLFPDWLIGDRLKSGELVGLLPELDTSIKTEPQHIAAIYPNARHPPLNVRAIIDY 297


>gi|261867377|ref|YP_003255299.1| LysR protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412709|gb|ACX82080.1| LysR protein [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 296

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 129/289 (44%), Gaps = 9/289 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V ++GSF  AA +L ++ S++S+ +  LE  + ++L  R  R ++ T  G KL   
Sbjct: 13  YFIQVVQAGSFAKAANKLGVTSSALSQNVKSLEKSLDLRLLNRTTRSISPTNAGEKLLAQ 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            +  +H +     +L +    P G +RI T+      LL   LK  +  YP+++I+++++
Sbjct: 73  ITPHFHAIVGGLNQLDDWRNSPLGTIRINTSEVAANLLLYPKLKTLMQRYPELKIEMVVE 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           N+ +DI     D  +RL   +    +  +    + M   A+P YL+      +I +L  H
Sbjct: 133 NRWVDIVEQGFDMGVRLGYALYKDMIAVKISDPVRMAVVASPDYLRGKPSVQAIADLPAH 192

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            LI            + +    +R   +P      VN+ L   Q  + G GIA LP  +V
Sbjct: 193 LLIGLRLSNQHGEAHWEFQHKGERITFQPE-PHFSVNNGL-RHQAALDGLGIAWLPKIVV 250

Query: 250 KDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + +     LV ++++       +Y  YP    ++   +AF   +    R
Sbjct: 251 EKDLEAGWLVELLDEYAMEYEPLYLYYPNRQGHS---RAF-ELVVEALR 295


>gi|16119418|ref|NP_396124.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15161948|gb|AAK90565.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 305

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 129/298 (43%), Gaps = 6/298 (2%)

Query: 3   FDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L+ F      GS T AA  L ++Q ++++ IS LE  V  +L  R ++ +  T 
Sbjct: 1   MDINVALKAFIRTVEKGSITAAARDLGVTQPAVTKHISNLERHVQARLLERSSKIVRPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L+  +      ++     ++ ++ +  G LRI     +G   L+  + EF   Y  
Sbjct: 61  HGLELYEASRIAIASIDAALEGVRINTGEIEGNLRIHAPSCIGVGHLERIVGEFQDEYCG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L LD + +D+  D  D ++   K I+   +I R++  +     A+P YL+   +  
Sbjct: 121 ISVELALDERTVDLVYDNFDLSVHYGK-IEDQDVIARRIGWVERFLVASPLYLEQVGQIN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L +  +I    ++ +     + L    R         L  N+   ++   + G G+
Sbjct: 180 DTGRLSELEVIGTPKMLAQ-RNTISLLGPSARAEDVAVRPLLITNNAHVMIAALLRGRGV 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            L+   +V D   +  LVR++ +    S   +  YP        ++AF +F+  + R+
Sbjct: 239 GLVQKNLVLDLLASGELVRVLPEYWLRSTEAFLAYPSTKFMRPVVRAFTDFVMPRLRN 296


>gi|262164661|ref|ZP_06032399.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
 gi|262027041|gb|EEY45708.1| transcriptional regulator LysR family [Vibrio mimicus VM223]
          Length = 295

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 134/301 (44%), Gaps = 13/301 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSVKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQLI       +   + D  I R    + S S     L       YA+P YL+    P
Sbjct: 121 IRIQLITT-TPGQLPELHLDLFISREIDQLNSLSFKATPLFEHQAGFYASPSYLEKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++QEL +HN++ +G+   + ++         +             +  ++      G G
Sbjct: 180 KTLQELTQHNVLCWGEQTYREVKTA-------QGKRVTLTGNFATTNPEALFYAGKAGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           + +    ++K+     NLVRI+ DV     TVY  YP+      + + F + +  K    
Sbjct: 233 VIVTGHIMIKEELKQGNLVRILPDVTIDQATVYAYYPKLEYQHTRTQLFLDHLKQKLAQA 292

Query: 298 K 298
           K
Sbjct: 293 K 293


>gi|257465253|ref|ZP_05629624.1| LysR family transcriptional regulator [Actinobacillus minor 202]
 gi|257450913|gb|EEV24956.1| LysR family transcriptional regulator [Actinobacillus minor 202]
          Length = 303

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 127/294 (43%), Gaps = 3/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L +F+ +    S + A+ +L +S   +S  +  LET +G+ L  R  R L LTE G 
Sbjct: 9   YHALTIFHTIVAEKSISAASRKLQVSPPVVSNALKSLETHLGLVLINRTTRSLELTEAGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L+  T  +   LE     +Q+    PSG +RI+        +++ +  EF   YP++ +
Sbjct: 69  RLYAKTQPLVQDLELEMESVQDLGETPSGTVRISVPRFAYHQIIRPHYAEFCRRYPEVLL 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + +  +D+  D  D  IR    +  S + ++ L  +    Y +P Y +    P ++ 
Sbjct: 129 EISVFDGTVDLLKDGFDLGIRFGDKLSDSIVARQLLPAMQDGLYISPSYAEQYGIPQTLD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI +  +    +         ++   E  +S +  +    ++     G GI  +
Sbjct: 189 DLKHHKLIGYRFITANRLLPLVLNDGGEQREIEMPVSLIVNDEVDLLVDATRQGLGIGRI 248

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
               +    D  + + ++E   T    VY  Y +  +   ++K   +F+  K +
Sbjct: 249 FASTLAMQPDQAHFIPVLEPYWTSYPPVYLYYQQHSQKAKRVKVLIDFLLEKFK 302


>gi|222149939|ref|YP_002550896.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221736921|gb|ACM37884.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 297

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 4/287 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR  SFT AA  L +S S++S  + GLE  +G++L  R  R +  TE G
Sbjct: 5   ELNDLLAFAAVARERSFTRAAASLGISPSALSHAMRGLEERLGVRLLARTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +     +  +E     L E    PSG +RI T     + +L   L  FLL +P+IQ
Sbjct: 65  DRLLQSIRPAFASIEDGLSALAEWRDSPSGSVRITTFSYPAKTVLMAKLPAFLLSHPEIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D++  DI  +  D  IR  + +    +  R    +     A P Y ++  +P + 
Sbjct: 125 VEVNIDDRLTDIVAEGYDAGIRFGENVAKDMIAVRVGPDLRTIVVATPCYFEHHPKPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L+ HN I +       +  +       R I          N           G+G+  
Sbjct: 185 GDLEVHNCIGYRLASAGGLLPWE-FERDGREIKVRTSGSFVGNDGDLAAAAVRAGAGLGY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           L ++ V ++     L++++++        Y  +P   +    L+A  
Sbjct: 244 LLEHDVAEDIASGRLIQVLDEWCPQFQGCYLYHPSRRQTPPALRALI 290


>gi|99078314|ref|YP_611572.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035452|gb|ABF62310.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 299

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 124/297 (41%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  +   G       +L LS +++S +++ LE   G +L  R  R ++LT +
Sbjct: 1   MLLDNLSLFLRIVEKGGLAAGGRELGLSPATVSERLAALEAHFGARLLNRTTRSISLTVE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +  + E  +  ++  + + +G +R++   DLG+N L   L  FL   P++
Sbjct: 61  GRELVHGAQRLLAETEELESRIRLGTQQIAGPIRVSAPSDLGRNRLAPILDRFLEQNPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +D++    D AIR  + +  SSLI R+L        AAP YL+    P  
Sbjct: 121 SIDLHLSDGFVDMATMGLDMAIRYGE-LADSSLIMRRLADNARIVCAAPSYLEANGTPGD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             +L  HN +           D  W   +D       +   ++ N    I Q+ + G GI
Sbjct: 180 PLDLAHHNCLLMRFGSDV---DRAWPFDIDGRRKRVVVRGNRIANDGDLIRQWALEGRGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                + V+ +     LV ++ +       +            +++A  + I  + +
Sbjct: 237 MRKSQWDVQQDLAEGRLVPLLRNFEVEPIHLQVVMSAGRPQPRRVRALLDTIVAEFQ 293


>gi|332304572|ref|YP_004432423.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171901|gb|AEE21155.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 294

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 128/292 (43%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +  ++L  F  +  +     AA  L++S +++S ++S LE  +G  L YR +R +  + +
Sbjct: 2   YTINELETFIAIVENKGVVSAASALNISPATVSHRLSKLERILGTVLIYRDSRNVRPSAE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++   ++   L   +  +        G+LR+     +    +   L +F   YPDI
Sbjct: 62  GEEFYQRVGDILAALHDAEFAIGARDSAIGGRLRVTLPPWIFSIFILPKLAQFEQQYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  ++ ++ +++  D  D AIR+   + SS L+ RK+V       A+PHYLK       
Sbjct: 122 VLDFLVTDQFVNVVDDAQDVAIRVG-TLASSGLLARKIVNNKRILCASPHYLKQHPPITD 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+ L  H  +          +    L            +   +++  ++ Q    G GI 
Sbjct: 181 IESLSTHRFVALP-----WQKQLKLLQNDGNVFSFNSNTRFTISNSDNMTQALRAGHGIG 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +  +K    +  LV ++ +V+  P   V+F  P+    T K +AF +F+
Sbjct: 236 IKSEIAIKQCIASGELVEVLPNVLASPEAPVWFLRPQNSLATRKAEAFYDFV 287


>gi|325522279|gb|EGD00900.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 308

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G 
Sbjct: 9   LNALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +  ++   SG L ++ T       L   L +F    P++ +
Sbjct: 69  DYLPPVRNAFRQIADASQRVSGAAD--SGVLTVSVTPFFASAWLVPRLAQFRHACPEVDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  +   D S D  D AIR     +   L   +L+T+ + A A+P  +     P +  
Sbjct: 127 QIVASHALADFSRDGVDVAIRHGLG-RYVGLCSERLLTVEIVALASPALVARLGMPATPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L         D   K    +     +D   G PR      +    +MQ  V G G  LL
Sbjct: 186 DLVGWP--HLHDAERKGWHIWFDAQRID-DFGPPRGPAF--DDARLLMQAIVAGQGAGLL 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V+D   +  LV++ +      F  Y  YP       K+ AFR +I   A+
Sbjct: 241 PAAMVRDELASGRLVQLADTAWLDDFAYYLVYPPHHAERPKVAAFRRWILDAAQ 294


>gi|264680788|ref|YP_003280698.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262211304|gb|ACY35402.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 295

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 126/297 (42%), Gaps = 10/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++ VF  V   GSF+ A  +L LS S++S+ I+ +E  +G++LF R A  + LT+
Sbjct: 1   MDQFGEMTVFLHVIEEGSFSGAGRRLELSPSAVSKLIARMEARLGVRLFERIAGAIRLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G      +  V   +E  +  ++ +  + SG +RI T +   + L+   L   L  +P 
Sbjct: 61  EGEHFRIASQRVVQAMEQAEACVRVADAEISGTVRIHTALTTAKYLVAPRLHLLLDRHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +  +L  +  D      D AI   +P +  +LI R L+       AAP YL+    P 
Sbjct: 121 LHLDFVLGTERGDFVRQGIDVAIHSGRPTE-QTLIGRPLMLRPWVIAAAPQYLQRFGHPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  + F          F+    +        I     N    +    +LG G+
Sbjct: 180 QPEDLLQHRCLNFTIRTQWNRWTFHEEGGLKTIDIPSHIGA---NQGELLRSLALLGHGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLK 293
             L  + +  +     LV +++     S     Y  YP       +++A  +F+  +
Sbjct: 237 VRLAHFHIAADLERGTLVPLLQQFQERSEDDRFYLLYPRGRSLAPRVRAVLDFLAGE 293


>gi|261213382|ref|ZP_05927663.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|260914989|gb|EEX81850.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
          Length = 294

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 8/288 (2%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V   G+ + A      S +  S +I  LE  +G++LF R  R LT TE G   +    +
Sbjct: 2   RVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRVFYDGALK 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +   ++  +  + E +  P G +RI   +  G+ L+   + EF   Y DI+++L+L + +
Sbjct: 62  ILEAVDEAEAAVAELAKNPKGSIRITAPLGFGRRLIASGIPEFHDRYSDIEVRLLLSDHE 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL--DKHN 190
           +DI  +  D A +L   +++S+L  R ++       AAP YL+    P S + L  D+H+
Sbjct: 122 VDIMSEGVDVAFKLG-VLENSNLRMRGIMNCERVVCAAPQYLERHGTPQSPEALLSDRHH 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            +      P   E +  L T +             +    + Q+ + G GI   P + VK
Sbjct: 181 CLLL--RFPGSKEYYWLLQTPEGLRKFEVTGPYGSDDGDVLTQWALGGRGIINKPLFEVK 238

Query: 251 D---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +   +  L  I++        +   YP       K++   +F+  + +
Sbjct: 239 EYIRDGRLTPILQHTPPAPIQLAAIYPHKRLQDPKVRLIIDFMTERCQ 286


>gi|149910200|ref|ZP_01898846.1| putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
 gi|149806786|gb|EDM66750.1| putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
          Length = 302

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 128/298 (42%), Gaps = 16/298 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  + +      A   L LS ++++ ++  LE   G+KL  R  R ++LT+ G   H
Sbjct: 1   MAMFVSIVKHHGLAAAGRDLGLSPATMTTRLQALEERYGVKLLNRSTRHVSLTDSGELYH 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   +  T+  +     +  G L+I+   D+G+  +   L EF   YPD+   L 
Sbjct: 61  KACIEILENVSETENLILNGVKEVKGSLKISAPKDIGKQYILPILSEFCKQYPDVVPYLY 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++   +I+    D  IR  + +  SSLI R+L +      A+P YL     PL+ Q+L 
Sbjct: 121 LNDDISNIAESGIDIVIRYGE-LADSSLISRRLSSSQRVLCASPEYLAKHGTPLTPQDLV 179

Query: 188 KHNLITFGDLIPKCMEDFNWLAT-VDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            H+ +    +I    E   W     D+      I     +    I  + + G+GIAL   
Sbjct: 180 NHDCLA---MIRSHEELKTWHFQDQDKKNAITVIPKRFSDDGEVIRYWALEGAGIALKSV 236

Query: 247 YIVKDNP---NLVRIMEDVIT--------PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             V+D+     LV ++   +T         S  +   Y        +L+ F +F+F +
Sbjct: 237 LDVQDDIHNLRLVTVLNGYMTNFNTSISASSADLNVVYISKKYQPKRLRLFLDFLFER 294


>gi|27363784|ref|NP_759312.1| DNA-binding transcriptional activator GcvA [Vibrio vulnificus
           CMCP6]
 gi|37679062|ref|NP_933671.1| DNA-binding transcriptional activator GcvA [Vibrio vulnificus
           YJ016]
 gi|320157190|ref|YP_004189569.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           vulnificus MO6-24/O]
 gi|27359900|gb|AAO08839.1| Glycine cleavage system transcriptional activator GcvA [Vibrio
           vulnificus CMCP6]
 gi|37197804|dbj|BAC93642.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319932502|gb|ADV87366.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           vulnificus MO6-24/O]
          Length = 307

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNSLRVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLSLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L     ++ E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFSALAEATDKVLERSE--KGALTISLPPSFAIQWLVPRLADFNAKEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL   ++    +P  L   +   S+Q
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEYLIPLCSPSLLLGNKPLESLQ 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+          +D+   A  +             +    ++Q    G G+AL 
Sbjct: 185 DLKRHTLLH-----DTSRKDWKQFAKENGLDEVNVNQGPIFSHSTMVLQAAAHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + K   +   L+   ++++    + Y    E   + G++  FR+++ + AR
Sbjct: 240 NNVLAKPEMEAGRLIAPFDEILLSKNSFYVVCHEQQADMGRIARFRDWMLVTAR 293


>gi|119896304|ref|YP_931517.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119668717|emb|CAL92630.1| transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 315

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 120/294 (40%), Gaps = 5/294 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L +F   A  GS   AA    +S  + S  +  LE  +G++LF+R  R L+LTE G  
Sbjct: 5   RALSLFVRAATLGSLRRAAIDQGISPQAASHAVMQLEKSLGVRLFHRTTRRLSLTEDGRM 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   +S     L     +++++     G L ++    LG+ +L   + EF  L+P+I++ 
Sbjct: 65  LFERSSPALDVLFAAIEDVRKARDDVGGLLTLSAPTALGRTMLWPLIVEFARLHPEIRVD 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              D+   D+  + AD   R      +   I R+L+ I +   AAP YL     P +I +
Sbjct: 125 AHFDDHLTDLVAERADVGFR-GGASPAEGTIARRLLPIQLIVCAAPDYLARHGAPRTIDD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H    +       +  + +L      I     + L  N   + +   + GS I  L 
Sbjct: 184 LVHHRCSGYRQANTGKLAPWEFLVD-GETIRRDVPAVLSCNDVDAEVDAVLSGSAIGQLA 242

Query: 246 DYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +          LV ++   +     ++  Y    +   + +AF +FI  +  D
Sbjct: 243 SFSAVTHIRAGRLVPLLVRHVAERDGIHLYYRRRSEQPRRTRAFIDFIVGRLAD 296


>gi|296161687|ref|ZP_06844490.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295888001|gb|EFG67816.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 339

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 134/293 (45%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F +VA++GSF+  A  L+L+  ++SR +S LE  + ++L +R +R +TLTE
Sbjct: 16  MDTLRSMRIFTLVAQAGSFSAVARSLNLTTGAVSRAVSELEERLKVRLLHRTSRRVTLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG    R    +   +   + E + +   P G LR+A    +GQ  +     E+  LYP+
Sbjct: 76  QGKIYSRSALRILADVADAEGEARSAHETPEGVLRVALNEAVGQEWVMLAAGEYRKLYPN 135

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +QL    +  D+    AD A+     +  S L+ R L T      A+P YL+  R P 
Sbjct: 136 VAVQLKSFVQPPDLFSGIADVALISASSLADSDLVCRVLGTTRNILCASPAYLREHRAPR 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSG 240
            ++ L  H  +         +  ++W     +  G  P    L V S  S++     G G
Sbjct: 196 ELRGLKSHAGLVADV---PGLPSYDWFFDRTQDDGALPMSGKLIVTSVDSLICAMRQGMG 252

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I ++P   V     + +L+R++      S  +Y  YP       K++ +  F+
Sbjct: 253 IGMVPAIAVAGGLRDGSLLRVLPAHTGGSMNIYALYPSRRFVDAKIRTWIEFL 305


>gi|167824166|ref|ZP_02455637.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167918938|ref|ZP_02506029.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|226197400|ref|ZP_03792977.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254260124|ref|ZP_04951178.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|225930779|gb|EEH26789.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254218813|gb|EET08197.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 306

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 12/302 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++L
Sbjct: 3   MKRDPLGGLHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSL 62

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G + +  T++ Y ++   +  L ++  +P G LRI+        +    L EF   Y
Sbjct: 63  TEAGQRYYDATAQPYRQVVDARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFRRY 122

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + +++  ++  +DI  +  D  IRL   +QS  +  +    +     A P YL     
Sbjct: 123 PKVSVEIRYEDHLVDIVKERLDAGIRLADRLQSGMVGVKIAPALTCALVATPGYLAQHGV 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P  + +L +H  I F    PK      W     R   E  +          +++     G
Sbjct: 183 PSKLADLARHMCIRF--RFPKSGRLHKWPLRDGRRDVELDVAGRFVSTDTGAVIDAARAG 240

Query: 239 SGIALLPDYI---VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +GIA +  ++   ++D+     L  ++         ++  Y        KL+AF   +  
Sbjct: 241 AGIAFV--FMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLRE 298

Query: 293 KA 294
            A
Sbjct: 299 HA 300


>gi|73540594|ref|YP_295114.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72118007|gb|AAZ60270.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 299

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 124/290 (42%), Gaps = 8/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F    R GSFT AA +LHL+QS+ISRQ++ LE+ +G KLF R  R L LT  G +  
Sbjct: 12  LVAFEAAMRHGSFTRAAAELHLTQSAISRQVAQLESFLGRKLFIREPRALRLTVSGQRYA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   +         ++ +     +  L +A +  +    L   L  F   +P+IQ++LI
Sbjct: 72  EVVQRLLVGCAEATEDVMKVRSHTA--LTVACSTGVAVLWLTPRLASFRAAHPEIQLRLI 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++    +S    D  +   +    +    R+L    +    AP YL      L+   L 
Sbjct: 130 VNDSLASLSAAEFDIGLYYLREGPPAGFAARRLYGEEVFPVCAPAYL--GGRALAPSALV 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L+   D   + M    W A        PR + L  N Y  ++Q  + G GIAL   +
Sbjct: 188 NETLLMLDDGQRQWMSWQAWFAHQGVHDANPR-AFLTSNQYPILLQLAIEGQGIALGWRH 246

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++     +  LVR  E   +     Y  +P         +AFRN++  +A
Sbjct: 247 MIDGCLRDGLLVRACEASASLGGGYYVVWPRDRMEPAAARAFRNWMVRQA 296


>gi|322514127|ref|ZP_08067195.1| transcriptional regulator [Actinobacillus ureae ATCC 25976]
 gi|322120013|gb|EFX91999.1| transcriptional regulator [Actinobacillus ureae ATCC 25976]
          Length = 289

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 122/290 (42%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++ SF+ AAEQL +  +++SR+I+  E  +  +LF R+  G+  T  
Sbjct: 1   MDLNNLRLFVAVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTPL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+         L     +      + SG LRI+T            +  F   YP +
Sbjct: 61  GLQLYEKVYLSLDNLTQATQDFIGEQQELSGYLRISTVSACEPIW--AAIAAFQTEYPQV 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++     ++ +D+  D  D A R+   + + ++I RK++ ++    A P +L     P +
Sbjct: 119 KVHCQATDRILDLVEDGIDIAFRMGD-LHTENVIARKMMDLNAVLVAHPDFLARHGTPKT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L       +     +       L   ++ +    I     N   +I         I 
Sbjct: 178 PQDLTVLPFACWA----RAGRKSAILQLGEQAVKIEPI--FTSNDVYAIAHQAKSAHAIC 231

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LPDY+ ++      LV +M D   P++ ++  YP     +  +K F  F
Sbjct: 232 QLPDYMAQELTEKFGLVELMSDYSAPTYPIHAIYPAHCHPSAIMKTFLGF 281


>gi|262374684|ref|ZP_06067956.1| transcriptional regulator [Acinetobacter junii SH205]
 gi|262310340|gb|EEY91432.1| transcriptional regulator [Acinetobacter junii SH205]
          Length = 297

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 123/294 (41%), Gaps = 11/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +A+ G+ + AAE L  S++ +SR +  LE     +LF R+ R ++LT 
Sbjct: 1   MDTLKAIQVFVCIAQQGNLSKAAEHLDYSKAMVSRYLEHLEQTFSTRLFQRNTRKVSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K       +  + +  +     +  + SG +R    + L Q  +   +K+F  LYP 
Sbjct: 61  AGEKALVYCENILQQQQLLE--GLAAPEQHSGTIRFTCGLFLFQLGVNECIKQFKKLYPH 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I   + L    +D+     D A+R+ + +    LI R +  I     A PHYL++     
Sbjct: 119 IHFDVYLTENTVDLMDAQFDLALRITQKVAD-GLIARPVCDIESIFCAHPHYLQDHTPLS 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I          + +    T  +P   P     + N  +++ Q C+   GI
Sbjct: 178 HPSQLIQHECIAHH----THNQYWTLFDTDQQPQNYPLNVTFKSNDVIALYQMCLKAEGI 233

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP  +V+ +     L ++  D   P  T+   Y          + F  F+  
Sbjct: 234 AMLPTLLVRQDIAQHRLQQVFTDFSAPDLTLSLVYASRQHLPKITQEFIAFVIE 287


>gi|207742543|ref|YP_002258935.1| hypothetical protein RSIPO_00731 [Ralstonia solanacearum IPO1609]
 gi|206593935|emb|CAQ60862.1| hypothetical protein RSIPO_00731 [Ralstonia solanacearum IPO1609]
          Length = 308

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE
Sbjct: 3   TMEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P+
Sbjct: 63  AGSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQYLTEPVCQALARFPN 122

Query: 122 IQIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +QIQ+ +  +  D+     D   + + + +  SSL+ R++V I    YAAP  L      
Sbjct: 123 LQIQVQISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAGRAPL 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L     ++  D            A    P+  P    LQ  +    ++  V G G
Sbjct: 183 ATPADLAGWPCLSGPDDASWGFRPA--GAPAAAPLEVPIQPRLQTLNAEMRVRAAVRGLG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A +   +     +   LVR++ D       VY   P       K++ F + +  +
Sbjct: 241 VARMARSVGDAEVETGRLVRVLSDYEPTPLRVYALMPARKLVPRKVRVFLDALEAQ 296


>gi|222086699|ref|YP_002545233.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724147|gb|ACM27303.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 305

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 11/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F  + LRVF   AR GSFT A E+L ++Q+++S QI  LE  +G  LF R  R + LTE
Sbjct: 13  QFPLNALRVFEAAARLGSFTRAGEELGMTQTAVSYQIKLLEGNIGELLFLRKPRQIALTE 72

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    SE +  L+     +   +      L I +T       L  ++  F L +P+
Sbjct: 73  AGERLAPKVSEAFALLQEAMASVSGDAET---TLLIDSTPTFASQWLARHIGSFQLQHPN 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L    K ID S D AD AIR  +      L    L+ I+     +P    +     
Sbjct: 130 VAVRLATSGKLIDFSRDPADIAIRSGRGTW-PGLRAHLLMKINFTPMLSPELAASIGGVH 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L K  +I  GD  P   + F      D  +     S L   S+ +     + G G+
Sbjct: 189 EPADLLKLRIIDAGD--PWWEQWFQAAEVPDPGLQGRPRSRLGAQSFEA--SAAIAGQGV 244

Query: 242 ALL-PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+L P++   D     L++  + + + S   +  YPE+ ++T +++AFRN+I  +
Sbjct: 245 AILTPEFYADDLAGGRLIQPFDILCSDSSDYWIAYPESRRHTPRIRAFRNWILGE 299


>gi|114562581|ref|YP_750094.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333874|gb|ABI71256.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 311

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 128/299 (42%), Gaps = 10/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L V   VA   S T AA  L +  ++ S  +  +E  +G++LF R  R L L+  
Sbjct: 1   MLLEDLYVVLKVAEFRSITAAATNLDMRTATASAALKRVEASLGVELFIRTTRQLRLSSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K      +    LE  +  ++       G LR+A + DLG+N++   + +F+  YP +
Sbjct: 61  GEKYIPQCEQAMLMLEQAKQNMKGELDIVDGDLRLAMSSDLGRNIVIPWIDDFMDTYPKV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+  +++ ++D   D  D A+R   P   ++L   K+  +     A+  YL     P  
Sbjct: 121 SIRANINDSNLDFYRDSVDLALRYGSP-NDANLYGFKICNVPRLLCASKAYLAKHGMPKH 179

Query: 183 IQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            Q+L  HN + +   D+     E +     +   +   RIS    N    + ++CV G G
Sbjct: 180 PQDLASHNGLLYQLNDITYDVWEFYRGDELLKIKMKGNRIS----NDGELVHRWCVSGKG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I L     +  +    N+V ++ +  T    ++  +P     T   +  R+ +  K R+
Sbjct: 236 IGLKSCLDISSDLLNGNVVHVLPEYQTKPTELWLIFPSRQSITPAARLLRDTLKDKTRN 294


>gi|288935388|ref|YP_003439447.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890097|gb|ADC58415.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 311

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 127/295 (43%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +     L +F  V  + +F+  A +  +S S +SR I  +E  +G +LFYR+ R +  TE
Sbjct: 6   NISIRALLIFIDVYETQNFSVVARREGISASQVSRVIHQMEDVLGQQLFYRNTRAIIPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R    +   +E  + EL E +++PSG +RI   +  GQ  +   L      YP 
Sbjct: 66  SGHLFIRYARAMTGSMEEARRELNERTLEPSGMVRINAPVFFGQRHVAPALPGLTERYPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L +  ID   + AD   R+   +  S+   R       H  A+P Y++      
Sbjct: 126 LSIELTLTDDYIDPHREPADVIFRIG-VLTDSAFHARVFGQQFYHLAASPDYIRRHGMLG 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S +EL +H  + +          +      +  +  P    +  N+  +++   + G GI
Sbjct: 185 SPEELARHKCLVYRG--SSGPNQWLLRRHGEEWVHYPVSPLMSSNNAETLLIAALGGMGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD+++ D   +  LV ++ +    + T    +   YP A      ++A  ++
Sbjct: 243 VLFPDWLIGDRLKSGELVGLLPELDTSIKTEPQHIAAIYPNARHPPLNVRAIIDY 297


>gi|224824268|ref|ZP_03697376.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603687|gb|EEG09862.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 320

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 123/298 (41%), Gaps = 6/298 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS +    +  F   A  GS + AAE   +S  + S+ +  LE  +G++LF+R  R ++L
Sbjct: 1   MSMNELRSITTFVRTAEFGSLSKAAEAQQISPQAASKALGQLEQYLGVRLFHRTTRSMSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE+G +            +     ++++    +G LRI     + Q+++   + E+  LY
Sbjct: 61  TEEGQRFLEAVHPSLVGFQQALSAVRQTKDDLAGPLRIVGPRTVLQSVIGPVMDEYCRLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++Q  + LD++  +   D  D   RL    Q   L+ R+L  + +   AAP YL+    
Sbjct: 121 PEVQPDVQLDDRIGNWVEDRIDVGFRLGNSPQ-EGLVARRLFPMQLIICAAPSYLRKYGI 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+ +L  H    F       +  +  +   D    +P       N     ++  + G 
Sbjct: 180 PQSLYDLSSHRCSAFRRASDGRVVPWR-VRVGDSMQDQPVNPSFCTNDEAMELRAVLAGE 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            I  L          +  LV I+ + +   ++++  Y        +++ F +    + 
Sbjct: 239 VIGQLAAPTAAPLIRSGRLVPILLEHMADHYSLFVYYGSRAAQPARVRRFIDLAVERL 296


>gi|254522643|ref|ZP_05134698.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219720234|gb|EED38759.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 308

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 126/294 (42%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F+ A   L + +S +SR+I+ LE  +G++L  R  R  ++TE G
Sbjct: 10  DLNDLFYFAMVVEHGGFSQAGRALAMPKSKLSRRIALLEERLGVRLIQRSTRRFSVTEVG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R    +  + E  +  +  S  +P G +R+A  I +    +   L +FL  +P + 
Sbjct: 70  QDYYRHCKAMLVEAEAAEEAIALSRAEPRGTVRLACPIAILHARIGPMLADFLAHHPKVT 129

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R  P++ S L+ R L        A+P  L     P  
Sbjct: 130 VQLEATNRRVDVVGEGVDVAIRVRPPPLEDSDLVVRVLARRAWCTSASPALLDQLGTPQV 189

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +      P  +  + +               L  +  +++    V G G+ 
Sbjct: 190 PADLATMPSVDLAS--PSQLHVWEYTGPDGVQASVHHRPRLVSDDMIALRAAAVAGVGVL 247

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +LP  ++ +      LV ++ + +     V+  +P        ++A  +++  +
Sbjct: 248 MLPRMMISEELARGALVPVLPEWVPKHGIVHAVFPSRRGLLPAVRALIDYLAER 301


>gi|118161424|gb|ABK64105.1| putative LysR family transcriptional regulator [Janthinobacterium
           lividum]
          Length = 305

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 132/288 (45%), Gaps = 6/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +RVF  + RS     AA++L +  S++SR++   E +VG +LF R+  G  LT +
Sbjct: 2   LDWDNVRVFLELTRSAGLVDAAKKLGIDHSTVSRRMRKFEEQVGTQLFDRNYVGYQLTPE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +   +     EL E +   SG++R+  T   G  +L  +L +F   YP I
Sbjct: 62  GHRLMEYAETMESTVFAATEELGEHNRLLSGQVRLGATEGFGAIVLAPHLAQFCGRYPHI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + LI   + + +S   AD AI + +P+ S   +  KL    +  YA P YL       S
Sbjct: 122 SVDLIAVPRFVSLSKREADVAISIERPL-SGPYVVTKLSDYRLKLYATPAYLARHAPITS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +H +I + D +      F+        +    +   +  S ++       G  +A
Sbjct: 181 VAQLAQHPIIGYVDDL-----VFSSELRYMDNVAPDSLRAFRSTSVIAQYHAARAGQALA 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP ++ + +  LV +++  I      +   P   +N  ++ A  N++
Sbjct: 236 ILPCFVAQQSNELVPVLDGDIDLLRAFWMISPSERRNIARVSALWNYL 283


>gi|221065600|ref|ZP_03541705.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710623|gb|EED65991.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 324

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 130/289 (44%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F +VA+ GSF+ AA    +S S++S+ ++ LET +G++L  R  R L LT +G +L
Sbjct: 20  ELQTFVLVAQQGSFSAAARLREVSPSAVSKIVARLETRLGVQLLRRSTRRLELTAEGEQL 79

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++       +  +     +P+G +RI  +   G  LL   +   +  +P +Q+ L
Sbjct: 80  LEQGRQLLADWLALESSVT-RQGQPTGVVRINASSSTGNRLLVPLVGPLMRTWPGLQLDL 138

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+    AD A+R  + + SS ++ RKL        A+P YL+    P    EL
Sbjct: 139 SFTDHVVDLIAARADIALRWGE-LPSSDMVARKLGHTRQVIVASPDYLQRFGRPAHPDEL 197

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +  G   P+ +  +       + +       L+VN   ++      G+G+A L  
Sbjct: 198 SGH--VRIGWNYPRAIPHWP-FVVAGKAVTVSMGEVLRVNDGEAMANLAKAGAGLARLSL 254

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFI 290
           Y   ++     L  ++ED        ++  Y  +  +   + +A  +F+
Sbjct: 255 YHAWEDLHAGRLQALLEDFNPGDLQPIHAVYVGKPGQLPVRTRAVLDFL 303


>gi|167033316|ref|YP_001668547.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859804|gb|ABY98211.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 306

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 8/294 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +   GSF  A  QL    + +S+++S LET +GI+L  R  R L  T++G +
Sbjct: 10  DELATLLALHEQGSFAAAGRQLERHPTVLSKRLSSLETRLGIRLVERSTRQLRFTDEGQR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E    +   + E  E +    G+LR+A    +G+  L G L +F+L YP + ++
Sbjct: 70  LVAKVREASRLIAEAEQEAAEGAATVRGRLRLALPAAMGRRWLSGMLADFVLAYPQVTVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++ +D+  +  D AIR+ + +  + L+  KL        A+P YL     P   ++
Sbjct: 130 AEYADRFVDLIGEGFDAAIRIGE-LADNRLVASKLCDHVRILCASPQYLARHGVPAEPEQ 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN + F  L          L +    +       L+ N   ++++    G GI    
Sbjct: 189 LPEHNCLGFSGLRSFPEWR---LKSGAHQVNVKVTGSLRSNDNEALLEAARRGVGILAGG 245

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           D+++ ++    NLVR++       +  +Y   P A  NT  L AF+ ++  + +
Sbjct: 246 DWLMGEDLASGNLVRVLPQWQLDVAAGIYLVRPTARLNTAALGAFKAWLEDRFK 299


>gi|160895708|ref|YP_001561290.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361292|gb|ABX32905.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 330

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 134/301 (44%), Gaps = 10/301 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D    +RVF  VA    F+ AA +L +S  +++R ++ LE  +G +L  R  R ++LT
Sbjct: 18  NMDRLQTMRVFQTVADEAGFSAAARRLDMSVPTVTRLVADLEQHLGTRLLQRTTRSVSLT 77

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +   +E      Q  +++ SG +R+ T     +++L   + +F  L+P
Sbjct: 78  EAGEAYLERVRGILADVEDAFSLAQAHTLELSGAVRVLTPPVFAEHVLAPLVADFHRLHP 137

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I++ +++   + ++   D      +     +++ R +VT    A A+P YL     P
Sbjct: 138 RICIEVFVESAS-EAAVGEYDITFLNAEEGYDGNVVARPIVTTCGLACASPEYLDAHGVP 196

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237
              ++L  H  +       +   D   L  +D   GE  ++    L  N   ++++  + 
Sbjct: 197 AVPEDLAGHQCLL--RRRAQGRSDVLRLRRLDGNAGEAEVAVQPVLVANHTGTLLRATLD 254

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+GI+  P  ++  +     L  ++ +  T  FT+Y   P       ++++F +F+    
Sbjct: 255 GAGISTQPLDLIARHLRSGRLRHVLPEWTTGHFTLYATLPTRKFMPARVRSFLDFVAEHT 314

Query: 295 R 295
           +
Sbjct: 315 Q 315


>gi|260429957|ref|ZP_05783932.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260418880|gb|EEX12135.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 312

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 8/293 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   GSF  AA  L ++ +SI+R I+ LE ++G +L  R  R ++LT  G+ + 
Sbjct: 11  IRVFLSVVEQGSFAGAARSLRMTPASITRIIAQLEEDLGQQLLLRTTRQVSLTGAGAMVA 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  + +    E+  ++    G+L I   +  G  L+ G +  F L YP+I + + 
Sbjct: 71  ARYRPVLEEFDRVTEEITRTTRPDRGRLAINAPMSFGMRLMPGLVASFRLAYPNIALDVQ 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  +DI  +  D AIR+  P    S I R++  +     AAP        P + +EL 
Sbjct: 131 LTDVLVDILDESCDLAIRISDPPGDKSTIWRRICHVPRQVVAAPALFDRIPRPETPEELP 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
               +++G          +W  T        R    +  N+   +    V G+G+  LPD
Sbjct: 191 PAQCLSYG----HGGAAESWTFTRGSLRRTVRAGTDVVSNNGEFLHAMAVSGNGMVNLPD 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++V++   +  L  ++ +       +   YP   K    ++ F +F     RD
Sbjct: 247 FLVREALASGALEAVLPNWQIAPLNLMLYYPPYEKLPPLVETFTDFFEAYIRD 299


>gi|33597131|ref|NP_884774.1| LysR family regulatory protein [Bordetella parapertussis 12822]
 gi|33566582|emb|CAE37839.1| LysR family regulatory protein [Bordetella parapertussis]
          Length = 302

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 132/292 (45%), Gaps = 6/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +D+ RVF  VA  GSF  AA  L L ++S+S  +  LE +VG +L +R  R + LT 
Sbjct: 1   MDRFDQYRVFAQVAEMGSFIKAAHALELPRASVSAAVQQLEGQVGARLLHRTTRQVRLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L      +  ++E      Q    + +G+L I     + + LL   L   L  +P 
Sbjct: 61  DGTQLLERIRPLLAEVEDIDQLFQACQRQAAGRLNIDVPSRIARRLLAPALPALLRRHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L   ++ ID+  +  DCA+R+   + SSSL+ R L ++ +   A+P YL+    P 
Sbjct: 121 LQLALGSGDRAIDLVREGVDCAVRIG-VLHSSSLVVRPLGSLALINCASPAYLREHGAPG 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              EL   H  + +          + +             S + VN+  S +  C+ G G
Sbjct: 180 HPDELAAGHWTVGYASPQTGRALPWEYATPRGGTSLVEAASRVVVNNAESYIACCLAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +P Y V+   D   LV +M D    S  V   YP   + + +L  F  +
Sbjct: 240 LIQIPRYDVQHLLDGGQLVEVMPDQRAASMPVALLYPHRRQRSRRLAVFLEW 291


>gi|330504941|ref|YP_004381810.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328919227|gb|AEB60058.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 304

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 124/304 (40%), Gaps = 13/304 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A +GS + AA  L +S +  S  +  LE ++ ++L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRTAETGSLSAAARLLDVSPAVASAALKRLEQQLQVRLLARSTRSLRLTPEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  + +L  S     G L+++   D G+N L   L EF   +P +Q+
Sbjct: 64  LYLVHARLALQSLEEGRQQLAGSQEGIRGVLQLSAPSDFGRNTLLSWLDEFQGEHPQLQL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+  +  D A+R   P + SSL+   +         A+P YL     P ++
Sbjct: 124 RLLLADRVADLFREPVDIALRYGAP-EDSSLVALPVAPDNRRVLCASPAYLARQGAPQTV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L +HN + +  ++   + D        R +          +      ++ V G G+  
Sbjct: 183 EALRQHNCLLY--MLHGRVHDRWRFQDGKREMVMSVAGNRVCDDADVTRRWAVAGQGVVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI------FLKA 294
                V D+     L  ++   +     +Y       + +  +   R F+       L A
Sbjct: 241 KSWLDVADDVREGRLQVLLPGWLGEPTPLYLVCAHRAQLSKAVHLLREFLQVRCETLLAA 300

Query: 295 RDWK 298
             W+
Sbjct: 301 APWR 304


>gi|307729536|ref|YP_003906760.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307584071|gb|ADN57469.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 304

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVILGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  + +  + EL       +G L ++     G+  +      FL   P+
Sbjct: 61  DGAAFLERCRGLLTEWDQAENELSAGRRAVNGHLIVSAPAAFGRKHVAPLAPAFLADKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 LQVSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           ++++L +HN + F     +  ++  W    +  +   R+   L  N    + ++   G G
Sbjct: 180 TLEDLPRHNCLAFNL---QGGQNRGWYFRRNGKLVTVRVGGSLDCNDGELLHRWVSEGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + ++       L  ++++   P + +   YP+      K++ F +++
Sbjct: 237 LGWRSTWEIQQQLARGELETVLDEFALPDYDILAVYPQQRYVPAKVRYFIDYL 289


>gi|116250075|ref|YP_765913.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254723|emb|CAK05797.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 299

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 133/293 (45%), Gaps = 12/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L+ F  VA +G  + AA +L +S+S +SR++  LE E+G++L  R  RG  LTE 
Sbjct: 1   MDIEELQTFVEVADAGGVSPAALRLGVSKSIVSRRLFRLEAELGVQLLARTTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       + V  +++  +  +  +     G+LR+A  +  GQ      L E    +P +
Sbjct: 61  GVTFRDYAARVCAEIDVARETILPA-GDLRGRLRVAVPLSFGQTHFAPILAEMARRHPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I     ++ +D+  +  DCAIR+   +Q S+LI R++  I+    A+P Y+K    P +
Sbjct: 120 HIHTCYSDRFVDLITEGYDCAIRVGY-LQDSNLIARRVGPIYGKFVASPDYIKAHGSPET 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H  +  G    + M+        D+ I        + ++  +++   V G GIA
Sbjct: 179 PEELIAHEALMQGTEAWQLMDG-------DKIITVRPQGRFKADNGTALVAAAVAGLGIA 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD +  +   +  LV +M     P    Y   P       K++     +  
Sbjct: 232 YLPDCLTHEFIASGALVPVMTHYPPPPAGAYVIRPPGQHPARKIRVLTELLIE 284


>gi|323492857|ref|ZP_08097999.1| transcriptional regulator, LysR family protein [Vibrio brasiliensis
           LMG 20546]
 gi|323312928|gb|EGA66050.1| transcriptional regulator, LysR family protein [Vibrio brasiliensis
           LMG 20546]
          Length = 319

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 134/287 (46%), Gaps = 8/287 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V + GSFT AA    +  S++S+QI  LE ++G++L  R  R  +LT  G ++
Sbjct: 6   QLSLFIDVVQQGSFTKAAALNDMDNSALSKQIKKLEADLGVQLLNRSTRSFSLTPAGEEI 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +    +   L   Q        +P G++R+     +GQN LQ  + EFL  YPD++I+L
Sbjct: 66  LQQAHNLVGTLHHVQSIADSYHAQPKGRIRVTAPFHIGQNHLQPVITEFLKTYPDVEIEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +LD+K  DI  D+ D A RL + +  SSLI RK+  I     A+  +++   EP + +EL
Sbjct: 126 LLDDKRSDIISDHFDVAFRLGR-LDDSSLIARKIADIRAVILASNKFIERYGEPKTPEEL 184

Query: 187 DKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            K   + + +  +       +     D  +        +VN   +++     G G A + 
Sbjct: 185 VKLPSVVYSNRSLVVDTMRLSDQPGSDTILNYKMKGNCKVNDINTLIAAVQDGVGYATVS 244

Query: 246 DYIVKDNP---NLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFR 287
              +  +    NL  I+        +  +Y  YP   + T  +KAF 
Sbjct: 245 SSNLNRSIVDMNLTPILTQYTLCNSNLALYALYPHRKQ-TALVKAFI 290


>gi|254708832|ref|ZP_05170643.1| Transcriptional regulatory protein, LYSR family [Brucella
           pinnipedialis B2/94]
 gi|256030358|ref|ZP_05443972.1| Transcriptional regulatory protein, LYSR family [Brucella
           pinnipedialis M292/94/1]
          Length = 308

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 7/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 15  AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 74

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 75  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P 
Sbjct: 135 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPK 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L++H L  + + +       N        I        +V+S L  ++    G+GI
Sbjct: 194 SPEDLNRHRLTGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGI 248

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 249 GILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 292


>gi|114797657|ref|YP_760208.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114737831|gb|ABI75956.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 299

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 127/294 (43%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +  F  V  +GS  +AA +L +++S +SR++S LE  +G +L  R  +G T T+ G
Sbjct: 8   DLLDVTSFVRVVETGSIANAAARLGIAKSIVSRRVSRLEAVLGAQLLTRTPKGTTPTDIG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +        +LE+ Q  + + + + SG LR+      G+ +    L EF  L+P +Q
Sbjct: 68  REYYARAEAGLMELESAQEVVSKLTGEVSGLLRVQVQTAFGEFVFAPLLAEFARLHPQVQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             +  +++ ++++ +  D AI    P     L+ RK+  I     A+P YL     P + 
Sbjct: 128 FDIRFEDRQVNMTDEAYDVAIWPG-PASDPMLVTRKIAGIRWAVVASPAYLDARGRPATP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ +  G            L   D        S  + ++   ++       G+AL
Sbjct: 187 ADLSAHDALLHGLDSGIWH-----LQGSDGWEHVRMNSRFRADNGHMLLTAARADLGLAL 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +P ++V++      L  ++         ++   P       +++A   F++ K 
Sbjct: 242 VPMFMVEELLGQGELEAVLPAFPHAWPDLHIFMPPQRAGIARVRALVKFLYQKL 295


>gi|73539789|ref|YP_294309.1| DNA-binding transcriptional activator GcvA [Ralstonia eutropha
           JMP134]
 gi|72117202|gb|AAZ59465.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 309

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 121/297 (40%), Gaps = 13/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LR F   AR  SF+ AA +L ++  ++S QI  LE E+G+ LF RH + + LT  G 
Sbjct: 15  LTALRAFEAAARHESFSRAATELFVTHGAVSHQIRALEEELGLPLFERHGKRVALTPPGR 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +   ++      LQ  +     +L I+T        L   +  F+  +P++ +
Sbjct: 75  LYAERIRDALLQIADATRVLQSGNRDK--RLTISTMPSFAARWLMPRIGSFIERHPELDV 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N  +D   +  D A+R+        L   KL+        +P +    R P    
Sbjct: 133 ELLSSNTLVDFGQEEVDIALRMGTG-DYPGLYVEKLLDDVFFPVCSPGF-NGGRLPEKPS 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L   NL+       +      W         EPR   L +     ++Q    G GIAL+
Sbjct: 191 DLAGLNLLR-----GEGDPWKPWFEAAGLDWPEPRKG-LMLEDSSLLLQAAAEGQGIALI 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +  ++     +VR+ +  IT  + +YF          K++AFR ++  +   ++
Sbjct: 245 RSSLAYNDLLSGRVVRLFDVSITCPWLLYFVCAPGALELAKVQAFRGWLLPEIDRFR 301


>gi|325275619|ref|ZP_08141521.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099293|gb|EGB97237.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 302

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 116/284 (40%), Gaps = 8/284 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F       SF+ AA    LS S+IS+ ++ LE  + ++LF R +R LTLTE+G+   
Sbjct: 1   MLAFLWAYEHRSFSAAARANDLSPSAISKLVTRLEDRLSVRLFQRGSRALTLTEEGAVYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V   +       +    + SG LRI T     ++ +   L +FL  +PD+ + + 
Sbjct: 61  TSARAVMDAMAEADSLAELFPGRLSGSLRIHTMATFAKHQIIPWLPDFLADHPDLSVTIE 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  + +D      D AI     +  SS + R++        AAP YL+    P +  +L 
Sbjct: 121 VGAQYVDQFDHGLDVAIH-SGVLPDSSRVARRIGEAQWITCAAPSYLEKRSRPQTPADLL 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+   F    P  +  +            P            +    + G GI  L D+
Sbjct: 180 EHDCFHFAFNSPWNIWSYE---HAGETTIVPIKPRSTFTQGDLLRSLALNGGGIVRLADF 236

Query: 248 IVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFR 287
            +  +     L+ ++E   +  +  +Y  YP     + +++AF 
Sbjct: 237 HIGKDLRAGRLLPVLESYQSRIAQPIYLIYPNRKNVSPRIRAFI 280


>gi|290510729|ref|ZP_06550099.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
 gi|289777445|gb|EFD85443.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
          Length = 320

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 136/289 (47%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F  AAE+L +S + +S+++S LE  + + L +R  R +T+TE+G 
Sbjct: 14  LNDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVVLLHRTTRRVTITEEGE 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   ++    EL +    P G LRI ++   G+ ++   L    L YP +++
Sbjct: 74  RIYEWAQRILQDVDEMMDELSDVRQVPQGTLRIISSFGFGRRVVAPALSALALQYPQLEL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  + ++ +D+  +  D  IR+   I + +LI R+L   H    A+P +L     P  + 
Sbjct: 134 RFDVQDRLVDLVNEGVDLDIRVGDDI-APNLIARQLAANHRVLCASPQFLARHPPPKQLS 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L + +          L  N    + Q+C+ G GIAL 
Sbjct: 193 DLAALPCLVIKERDHPFGIW--QLHSKEGQHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 250

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V++   + +LV ++ +   P+  V+  Y   L  + K++    F+
Sbjct: 251 SWWDVRENIASGHLVHVLPEFFQPA-NVWAVYVSRLATSAKIRTTVEFL 298


>gi|115524094|ref|YP_781005.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115518041|gb|ABJ06025.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           BisA53]
          Length = 297

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 118/290 (40%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F  VAR  SFT AA +L LS S++S  +  LE  +GI+L  R  R +  TE G
Sbjct: 6   TLGDLSAFVAVARERSFTRAAAKLGLSPSALSHTLRELEARLGIRLLTRTTRSVAPTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    ++E     L E   KP+G +RI       + +L   L   L  YPDI+
Sbjct: 66  ERLLATVAPRLSEIEAELAGLSELREKPAGTIRITAGDHAAETVLWPALIGLLRDYPDIR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ DN   DI     D  +R  + I    +  R    + M    +P Y      P   
Sbjct: 126 VEIVADNALTDIVTARFDAGVRFGEQIAKDMIALRIAPDMRMAVVGSPAYFAQRPRPKKP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H+ I    +    +  +       R +       L  N+    ++  + G G+A 
Sbjct: 186 QDLTAHSCINLRLMTYDNLYAWE-FEKAGREMKVRVEGQLVFNTMALALEAALAGFGLAY 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P+   + +     L+R++ +   P    +  YP   + T       + +
Sbjct: 245 VPEDRAQAHLAEGRLIRVLTEWCPPFPGYHLYYPS-RQPTPAFALLVDAL 293


>gi|269968200|ref|ZP_06182231.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827198|gb|EEZ81501.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 301

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 131/299 (43%), Gaps = 13/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D L +F  VAR  S T A+E+L++  +++SR++  LET +  +LF R A    LT  G
Sbjct: 5   SLDDLLLFVSVARYQSLTQASERLNVPLATLSRKLKRLETNLNCRLFNRSAHHFALTTDG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K +++   +   L      +       SG ++I+  I++ Q  L+  + EF   +P I 
Sbjct: 65  EKYYQLCEPLLLSLNNVTSRIATERQSLSGTIKISAPINMTQMWLKRCVYEFAEQHPKIC 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N+ I++  +  D + RL   I+    I +KL +I     A+  YL+  +     
Sbjct: 125 IDLDVQNEKINLVSNRVDVSFRLGDLIEQD-WIAQKLWSIPFALCASRSYLEQHQPITHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H LIT  +     + +     T D P+          N  L +    + G GIA 
Sbjct: 184 EQLVHHRLITVNNDSQWKLVNQITNETFDHPLK----FQFTSNDVLLVRDAVIHGLGIAW 239

Query: 244 LPDYIV----KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +P Y       D  NL+ ++         V+  Y +  K   ++ AF   +     +WK
Sbjct: 240 IPTYYFHELNHDQHNLLPLLPKWQCSGKEVFIMYRDRDKRPARVDAFIEHVL----NWK 294


>gi|209966216|ref|YP_002299131.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
 gi|209959682|gb|ACJ00319.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
          Length = 302

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 113/288 (39%), Gaps = 7/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L     +AR GSF  AA  L +S +++S  I  LE  +G++LF R  R ++L++ G
Sbjct: 5   DLNDLDAVIAIARRGSFRAAALDLGMSTTALSNAIGKLEASLGVRLFNRTTRSVSLSDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        +      ++     PSG LRI       + +L   + EFL  +P + 
Sbjct: 65  RLFVAQIGPAVQDIHGALEAVRSQQTVPSGTLRINAFATAAREILSPLVLEFLRRHPQVH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+ + + +DI  +  D  +R+   + S  +              +P Y +    P   
Sbjct: 125 VDLVTEGRLVDIVAEGFDLGVRVADLVPSDMIAISLGRPQRHAVVGSPAYFQRHDTPRVP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  H  I    +       + W    D    +  ++  + ++         + G G+ 
Sbjct: 185 PDLLHHPCI---RVRLPNGALYRWQFEKDGQTAQIDVAGPITLDEAGLARIAVLDGIGLG 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
              +  V+   D   LVR+++D   P   +   YP     +  L+AF 
Sbjct: 242 FFMEQDVRTDIDAGRLVRVLDDWTPPRAGLCLYYPGRRNPSAALRAFI 289


>gi|304404667|ref|ZP_07386328.1| transcriptional regulator, LysR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304346474|gb|EFM12307.1| transcriptional regulator, LysR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 308

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 130/300 (43%), Gaps = 12/300 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  K+ +F  +    S T  A+   +  ++ISR I  LE E+ I+LF+R  R +  TE 
Sbjct: 1   MDTKKIEIFVDLMHKRSITAVADGRDVDAATISRAIRSLEEELNIQLFHRTTRRIEPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     + H+    +    E + +P G LRI+  +   ++ +   L  F   YPD+
Sbjct: 61  GFIFYENIEPLLHEFRQAKQMASELNRQPQGVLRISCPVSFAEHNITPLLPAFSKRYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQ---SSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           Q +LIL +  +D+  ++ D AIR+  P+Q   + S++  KL  +     A+  ++     
Sbjct: 121 QYELILTDTPLDLVTEHIDLAIRVG-PLQLHANKSIVTHKLADMVTRVCASTAFIHEHGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + +EL+ +  +    L       + +     R I       L+ ++ +++ Q  +   
Sbjct: 180 PSTPEELEHYPCLLL-HLGGFLRNRWVFTDPSGRKIEVQLKELLRTSNAMALKQCAMQDM 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPS----FTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI LL  +I         LV +  +    S     + +  YP   +   K+ AF  +I  
Sbjct: 239 GITLLAMWIAGKELREGTLVDLFPEHTVTSAIEEASAWILYPARSRVPRKVTAFVQYIRE 298


>gi|330808863|ref|YP_004353325.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376971|gb|AEA68321.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 297

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 125/288 (43%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L     VAR  SFT AA QL +SQS +S  I  LE  VG++L  R  R +++TE G 
Sbjct: 6   YSDLLALIAVAREQSFTRAASQLGISQSMLSHSIQRLEARVGVRLLTRTTRSVSVTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L         ++ET  I + E    P+G +RI  T  + + +L   L + L  YP I +
Sbjct: 66  RLLNTVEPRLREIETELIAVAEFGDTPAGNIRITATDHVIETVLWPKLAQALPKYPQISV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++D    DI  D+ D  IRL   + +     R    +      AP Y+++   P   Q
Sbjct: 126 EVVIDYGLTDIVADHFDFGIRLGDGLANGIEAVRIAPDMRFVMVGAPSYMESRAMPTRPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I     +P     + W    D      R+   L  N    I+   V G G+A 
Sbjct: 186 DLMEHECINM--RLPTRGGLYAWELEKDGQEINTRVKGRLVFNGINQILDAAVSGFGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P+ I   +     LV +M+        ++  Y    + +  ++   +
Sbjct: 244 VPEDIAHPHLVNGTLVPVMQAWWRTFPGLHLYYSSEREKSRAMQVLID 291


>gi|262276331|ref|ZP_06054140.1| transcriptional regulator [Grimontia hollisae CIP 101886]
 gi|262220139|gb|EEY71455.1| transcriptional regulator [Grimontia hollisae CIP 101886]
          Length = 298

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 13/292 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F ++  +GS+T A+++  +  ++++R+I  LE ++ IKL +R AR L LTE 
Sbjct: 1   MKLDDLNLFRLIVENGSYTQASKKTGIPVATLTRRIQALEEDIQIKLLHRDARKLALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   S +  +L      L E     SG LR+A   ++   +LQ  L  FL  YPDI
Sbjct: 61  GQSFYDTCSPLLEQLLEATESLSECCHGTSGTLRLAAPSNIAMKMLQPMLSAFLNAYPDI 120

Query: 123 QIQLIL--DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ L L  D     +   +A   I    P + S++I R+L T+     A+P Y+ +    
Sbjct: 121 KLDLSLFSDTTPSHLDDRHAFFKI---GPQRDSTMIARRLHTVRDILVASPEYIASHAPI 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L KH L+         +  +         +        + +    +      G G
Sbjct: 178 TDATDLSKHALL-----KGWPLMRWRLSNESGEQLCLSDQGRFEASELRVVRAAAKDGLG 232

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL+PD +V+    +  L +I+ D  T    ++  Y +      KL+ F +F
Sbjct: 233 IALIPDVLVQKDIQSGELQQILPDWTTEPRDIFLMYHDKTHLPAKLRVFIDF 284


>gi|260759774|ref|ZP_05872122.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|261750598|ref|ZP_05994307.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|265985241|ref|ZP_06097976.1| transcriptional regulator [Brucella sp. 83/13]
 gi|260670092|gb|EEX57032.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|261740351|gb|EEY28277.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|264663833|gb|EEZ34094.1| transcriptional regulator [Brucella sp. 83/13]
          Length = 304

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 128/297 (43%), Gaps = 10/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L+
Sbjct: 1   MIPDIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G K       + ++ E T +    S+   S    IAT    G   L   + +F+  +P
Sbjct: 61  DAGRKFLPEVRRLLNQTEDTMLRAMASAQSTS-SFSIATLPTFGTRWLMPRIPDFVEKHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + +   +   D      D AI   +P+ + +     L +  +   A+P  LK  R P
Sbjct: 120 GIALNVASRSGVFDFEEQPFDLAIHYGQPVWAHA-TCTFLCSEVIVPVASPSLLKTRR-P 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL+   L+    L  +      W  +     G+      +   +  ++   + G G
Sbjct: 178 ASPEELENEPLLH---LATRPKMWAQWFESCGVE-GQSAYRGHRFEQFSMVIGAALAGLG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ALLP Y+++    +  LV + E  +      Y   PE        + F  +I  + 
Sbjct: 234 FALLPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEGKLENPLTQVFCQWIAGQV 290


>gi|167569906|ref|ZP_02362780.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 306

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 126/294 (42%), Gaps = 11/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G + H
Sbjct: 11  LHVFISVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYH 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T++ Y ++   +  L ++  +P G LRI+        +    L EF   YP + +++ 
Sbjct: 71  DATAQPYRQVVDARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFRRYPKVSVEIR 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     P  + +L 
Sbjct: 131 YEDHLVDIVKERFDAGIRLADRLQPGMVGVKIAPALACALVATPGYLAQHGTPAKVADLA 190

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F    PK      W L    R +              +++     G+GIA +  
Sbjct: 191 RHMCIRF--RFPKSGRLHKWPLRDGRRDVDLDVAGRFVSTDTGAVIDAARAGAGIAFV-- 246

Query: 247 YI---VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++   ++D+     L  ++         ++  Y        KL+AF   +   A
Sbjct: 247 FMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLREHA 300


>gi|332307373|ref|YP_004435224.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174702|gb|AEE23956.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 292

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 129/288 (44%), Gaps = 14/288 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L +F  VA+  SFT AA+ L +S+  +S QI  LE ++G  LF R  R ++LTE+G+
Sbjct: 8   FERLILFSEVAKQLSFTRAAQVLSISRGYLSEQIRKLEQDMGKHLFIRSTRNVSLTEEGT 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    + +   L   + E++  +    G LR+       Q  L      F   YP I+I
Sbjct: 68  QLLAGMNHIKRSLLELEREVRHDNDTLEGILRLTAPSQFAQRYLLDLCSAFQADYPAIRI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L       D++ +  D A R  +     +++ +KL        A+P YL     P  + 
Sbjct: 128 SLDCSYTTHDLNHNDFDLAFRATQ-TPPQNMVAKKLFDYRHMCCASPDYLAKNGTPNQLS 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +             N           P    + V   L + ++ + G+GI L+
Sbjct: 187 DLRNHACLRQNMKAQWQFSGQN----------IPVDGPIAVTDNLILKKHALAGNGIILV 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P+Y+V        LV ++ D +   F ++  +P+ ++ + +LKAF  F
Sbjct: 237 PEYLVDKEIQQGLLVPLLTDYLQNDFAIHLIHPQLIQQSARLKAFIAF 284


>gi|221195947|ref|ZP_03568994.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221202620|ref|ZP_03575639.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176554|gb|EEE08982.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221182501|gb|EEE14901.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 299

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 119/296 (40%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +W++ R F  V   GS + AA  L ++Q +  R I+ LE   G  LF R   GL  T+
Sbjct: 4   DLNWERYRTFLAVLTEGSLSAAARALGITQPTAGRHIAALEAAFGQTLFTRSPSGLLPTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +       +           G +RI+ +  +   +L   L +    +P 
Sbjct: 64  AALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPMLAQLRREHPG 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L+  ++  D+    AD A+R+  P Q + L+ R++  + +  YA   YL     P 
Sbjct: 124 LVIELVPTDRIQDVLNREADIAVRMASPSQDA-LVARRIGELEVALYARDDYLARYGAPS 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++  L  H LI F  + P        L +  R         L+ +S L+ +     G GI
Sbjct: 183 TLDALAHHALIGFDTVTPFVRSAGRGLPSWTREAF-----ALRTDSNLAQLAMIRAGYGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 + + +  LVR++ D        +    E L+ + + +A  + +    R +
Sbjct: 238 GFCQSRLAQRDARLVRVLPDGPAVKLETWVVMHEDLRASPRCRAVFDALANGLRAY 293


>gi|326795566|ref|YP_004313386.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326546330|gb|ADZ91550.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 298

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 126/301 (41%), Gaps = 14/301 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +    +F+ AAE L  S SS++R++  LE E+  KL  R  R L LT  G 
Sbjct: 2   FEAMEQFIKIVELHTFSAAAESLGKSPSSLTRKLDQLEEELKTKLLIRSTRRLELTSDGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++   ++  +    E      G + I T    G+++L   + EF   +P+ ++
Sbjct: 62  QFYNQCKQILESVQVAKHSFIEKRTSVEGTIAITTFDSFGRSVLVPLIAEFRDTHPNTKV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + LDN   D+     D AIR  +P   S+LI R L  +     A+ HYL+      S  
Sbjct: 122 TIGLDNTIADLHKSPFDIAIRYGRP-DDSNLIFRPLKKMPSILIASEHYLEKAPPLESPD 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ + F     K  +   W    +    + RI   L       ++ +     GIAL
Sbjct: 181 DLKLHSCLAF----YKSRQHTWWYFEKNNEQRKVRIDPTLTSEGGTPLLMWARANQGIAL 236

Query: 244 LPDYIVKDN---PNLVRIMEDV-----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  Y V+ +    +L+ ++           +  +Y  +  +      ++A  + I  +  
Sbjct: 237 VSKYFVERDLKNGSLIEVLPTWNASLTEQDNAIMYLVWKASSAQKPIVRAMIDLIMNRVA 296

Query: 296 D 296
           +
Sbjct: 297 N 297


>gi|323524924|ref|YP_004227077.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323381926|gb|ADX54017.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 309

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 118/296 (39%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D+  L++F  + R GSF  AA +   + S++S  +  LE  +G KL  R +R ++ TE
Sbjct: 6   RIDFADLKLFLAIVRCGSFRLAAVEAGQTPSAVSHAMRRLEDRLGAKLLNRTSRAVSPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L     + ++++ +             G LR+    D    L+   L EF  + P 
Sbjct: 66  AGLDLASRLQDGFNQIGSALESFAAPGTARLGSLRLNVFADAAHLLIAPALPEFARVCPG 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ +++DN+ IDI  +  D  IR    +    +             A+P YLK    P 
Sbjct: 126 VQLTVVVDNRPIDIVAEGYDAGIRYGHHVPEDMIAVPLTRPQRWVMVASPAYLKKHGTPR 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            + EL  H  +    L+      + W   V       R+   + +N  ++ +  C  G G
Sbjct: 186 QLGELANHQCL---QLLLGDNSSYRWEVDVAGKKKSIRVPGVITINDTVTTISACKAGMG 242

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA + +  + D      L  ++E+       ++  Y     N   L    N I  +
Sbjct: 243 IAYVLEARIADELARRTLKVVLEEHACAEDPLHIYYSSRRYNHPALLRLINLIRER 298


>gi|170697500|ref|ZP_02888590.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137523|gb|EDT05761.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 299

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 122/291 (41%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR  SFT AA  L +SQS++S  I  LET +G++L  R  R +  TE G
Sbjct: 5   NFADLLAFIAVARERSFTRAAAGLGVSQSALSHTIRSLETRLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +  + ++E     L E   KP+G +RI  T  + + LL   L   L  Y +++
Sbjct: 65  ERLLQNLAPRFDEIEDELSALAELRDKPAGTVRINATDYVIRTLLWPRLSPILRDYRELK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D    DI     D  +RL   +    +  R    + M    AP Y      P + 
Sbjct: 125 VEFVTDYGLSDIVAQRFDIGVRLGDQVAKDMIAVRISPDLKMAIVGAPAYFAEREPPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P     + W         + R+   +  N    ++   + G G+A
Sbjct: 185 QDLVAHDCINL--RLPTHGALYAWELARGDDTLQVRVDGQVTFNGTYEMLDAALAGYGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P  +   +     LV +++D        +  Y    +++       + +
Sbjct: 243 YVPAELAVPHVAAGRLVSVLDDWCPTFPGHHLYYASRRQSSRAFALIVDAL 293


>gi|59711198|ref|YP_203974.1| DNA-binding transcriptional activator GcvA [Vibrio fischeri ES114]
 gi|197336135|ref|YP_002155348.1| glycine cleavage system transcriptional activator [Vibrio fischeri
           MJ11]
 gi|59479299|gb|AAW85086.1| DNA-binding transcriptional dual regulator, glycine cleavage system
           transcriptional activator [Vibrio fischeri ES114]
 gi|197317625|gb|ACH67072.1| glycine cleavage system transcriptional activator [Vibrio fischeri
           MJ11]
          Length = 302

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 121/294 (41%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLRVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++  L     ++ E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKEIFSSLSEATDKVLERSA--KGALTISLPPSFAIQWLVPRLSDFNNQEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     +  D AI   +      L    L    +    +P  L N +   +I 
Sbjct: 126 RIKAVDMDEGSLTEDVDVAIYYGRG-NWPGLRVELLYQEQLLPLCSPQVLLNEKPLATID 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+          G         +    ++Q    G GIAL 
Sbjct: 185 DLRFHTLLH-----DTSRKDWKQFVKHYELAGMNVNQGPIFSHSTMVLQAAAHGQGIALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   D   LV   E+V+      Y    E   +TG++  FR +I  KAR
Sbjct: 240 NNVLAQPELDAGRLVAPFEEVLVSKNAFYLVCNEKQADTGRIATFREWILSKAR 293


>gi|53719362|ref|YP_108348.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|67640533|ref|ZP_00439336.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121600049|ref|YP_992916.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124384979|ref|YP_001026252.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126442202|ref|YP_001058997.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126448249|ref|YP_001080473.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126454207|ref|YP_001066246.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134277448|ref|ZP_01764163.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167002534|ref|ZP_02268324.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|167738567|ref|ZP_02411341.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167815787|ref|ZP_02447467.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167845703|ref|ZP_02471211.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167894275|ref|ZP_02481677.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167902669|ref|ZP_02489874.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910914|ref|ZP_02498005.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|217421907|ref|ZP_03453411.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|237812258|ref|YP_002896709.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242317376|ref|ZP_04816392.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254177812|ref|ZP_04884467.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254179800|ref|ZP_04886399.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254188800|ref|ZP_04895311.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199779|ref|ZP_04906145.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254206104|ref|ZP_04912456.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254297645|ref|ZP_04965098.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254358474|ref|ZP_04974747.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52209776|emb|CAH35747.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|121228859|gb|ABM51377.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124292999|gb|ABN02268.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126221695|gb|ABN85201.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126227849|gb|ABN91389.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|126241119|gb|ABO04212.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|134251098|gb|EBA51177.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147749375|gb|EDK56449.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147753547|gb|EDK60612.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148027601|gb|EDK85622.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|157808022|gb|EDO85192.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157936479|gb|EDO92149.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698851|gb|EDP88821.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|184210340|gb|EDU07383.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217395649|gb|EEC35667.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|237503166|gb|ACQ95484.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|238521263|gb|EEP84716.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|242140615|gb|EES27017.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|243061808|gb|EES43994.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 306

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 128/302 (42%), Gaps = 12/302 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++L
Sbjct: 3   MKRDPLGGLHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSL 62

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G + +  T++ Y ++   +  L ++  +P G LRI+        +    L EF   Y
Sbjct: 63  TEAGQRYYDATAQPYRQVVDARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFRRY 122

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + +++  ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     
Sbjct: 123 PKVSVEIRYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGV 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P  + +L +H  I F    PK      W     R   E  +          +++     G
Sbjct: 183 PAKLADLARHMCIRF--RFPKSGRLHKWPLRDGRRDVELDVAGRFVSTDTGAVIDAARAG 240

Query: 239 SGIALLPDYI---VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +GIA +  ++   ++D+     L  ++         ++  Y        KL+AF   +  
Sbjct: 241 AGIAFV--FMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLRE 298

Query: 293 KA 294
            A
Sbjct: 299 HA 300


>gi|332529919|ref|ZP_08405870.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040616|gb|EGI76991.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 328

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 135/298 (45%), Gaps = 17/298 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +  V+A++ S+T AA +L +S++S S +I+ LE  +G+ L  R  R + LT  G +L
Sbjct: 21  DLHLLTVLAQTRSYTQAARRLGVSKASASMRIAELERSLGLPLVRRTTRAVGLTAAGQQL 80

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                  + ++E      ++ +  P G +R++  + LG+  +   L  F   +P+I+I+L
Sbjct: 81  VDDIGAAFARIEQGVASAKDLAGAPRGLVRVSAPVALGRQHIAPTLPAFARAWPEIRIEL 140

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ ++++ +  D AIR  +    +  +   L        A+P YL    EP    EL
Sbjct: 141 DLSDRFVNLAQEGFDLAIRHAQAAPDTQ-VATVLCDTRSVLVASPDYLARAGEPKHPAEL 199

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--------NSYLSIMQYCVLG 238
            +H  + +  L     + + +  +  R + +  +  + V        N+   + +  + G
Sbjct: 200 ARHQCLLY--LRGAAGQSWAFEKSTGRRVADSDVERVAVAVGGPLKANNSEVLREAALGG 257

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFI 290
            GIALLPD+   +      L R++   +   F    +Y   P + +    ++   + +
Sbjct: 258 LGIALLPDFSAAEALAAGQLRRVLPAWLPRDFFGERIYAIRPWSPQPPRAVQCLVDHL 315


>gi|163853203|ref|YP_001641246.1| carbonate dehydratase [Methylobacterium extorquens PA1]
 gi|163664808|gb|ABY32175.1| Carbonate dehydratase [Methylobacterium extorquens PA1]
          Length = 302

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 120/299 (40%), Gaps = 13/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  VA +G F   A     S S +S  +  LET +G++LF R  R +  T
Sbjct: 1   MAMDLGDLAAFVSVAEAGGFREGARASGTSASGLSEAVRRLETRLGVRLFNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    +    ++E     +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGARLLERLTPALGEVEAALDVVNGFRDRPAGTLRLNVPVSAARLVLPRIVPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI++ ++ ++  +D+     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 DIRLDVVAEDSFVDVLAAGCDAGIRYDERLEQD-MIAVPIGPRQQRFATAAAPAYLDRHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSY-LSIMQY 234
            P    EL  H  I         +    W    D  +     S    ++V +     +  
Sbjct: 180 HPQHPSELLDHACIGGRFASGATI---AWEFERDGEVVRVNPSGPLIVRVGAATDLAVDA 236

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V G GI  L +  ++   D+  L  ++E    P    +  YP        L+AF +FI
Sbjct: 237 AVAGVGIITLFEDWLQPHLDSGALEPVLEPWWQPFSGPFLYYPGRRYLPAPLRAFIDFI 295


>gi|28869687|ref|NP_792306.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852929|gb|AAO56001.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 302

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 128/298 (42%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  +A   SFT  A  + LS ++++R ++ LE+ +GI L  R  R + LT+
Sbjct: 1   MDRIQEMTLFAALAGQTSFTGVARHVGLSTATVTRAVASLESRLGILLVVRTTRNMRLTK 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L   +         P+G L +      G   +   L  FL  YP 
Sbjct: 61  AGQRFAEDCRRLLADLSEAENAAAGVHALPAGTLTVTAPQMFGALHVTPVLTRFLSEYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+ IL ++ + +  +  D A+R+   ++ SSL   ++ ++     A+P YL     P 
Sbjct: 121 VDIRAILVDRVVSMLDEGVDVAVRIGA-LRDSSLTAIRVGSVRRMVCASPVYLTQHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I+           F      D+       S L + S+ + +   +   G+
Sbjct: 180 HPDDLQQHATISTSAPERPPHWAFR---VDDQDYSVNVASRLSLTSFQASINAALQHWGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +P Y ++++     LV ++ED       V+  Y E  + + ++++F +F     R+
Sbjct: 237 TQVPHYQIREHLHNGRLVCVLEDFEIAPEPVHVVYSEGRRGSSRVRSFVDFCVSALRE 294


>gi|170737849|ref|YP_001779109.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820037|gb|ACA94619.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 300

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 124/297 (41%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 3   IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 63  EAALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPLLAQLRRDHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P Q + L+ R++  I +  YA   YL +   P
Sbjct: 123 GLVIELVPTDRIQDVLKREADIAVRMAPPAQDA-LVARRVGEIEVGLYARDDYLAHHGAP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I  L  H LI F  + P     F   A    P+ +     L+ +S L+ +     G G
Sbjct: 182 ATIDALAHHTLIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I      + K +  LVR++ D +      +    E L+ + + +A  + +    R +
Sbjct: 237 IGFCQSALAKRDARLVRVLPDALGMRLDTWVVMHEDLRTSPRSRAVFDALANGLRAY 293


>gi|78063199|ref|YP_373107.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971084|gb|ABB12463.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 303

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 120/293 (40%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G 
Sbjct: 9   LQCLIAFEAAVRHASFTRAATELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  +      ++ +       +L IA +  +    L   L EF   YPDI++
Sbjct: 69  QYAEQVHRLLTQCAEATHDVMKPYGDL--ELTIACSSGVALLWLTPRLPEFRAAYPDIKL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   
Sbjct: 127 RLIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLA--GRTLDAA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+   D   + M    W    D    + +   + +NSY  I+Q  +LG GI+L 
Sbjct: 185 DLANETLLRLEDGQRQWMSWSEWFDQNDIDRQKAQPQDITINSYPQIVQMTILGQGISLG 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             Y++    +   LVR+ +   +     Y   P         + F  ++F +A
Sbjct: 245 WRYMIDACIEAGLLVRVTDASASHGGGYYVISPNDRAQNHAARLFTRWLFEQA 297


>gi|229524639|ref|ZP_04414044.1| LysR-family transcriptional regulator [Vibrio cholerae bv. albensis
           VL426]
 gi|229338220|gb|EEO03237.1| LysR-family transcriptional regulator [Vibrio cholerae bv. albensis
           VL426]
          Length = 295

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 15/287 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L+ F  VA+ GSF+ AAEQL  S+  +SR +  LE  +G  L +R  R L+LTE 
Sbjct: 1   MNLTHLQSFMAVAKLGSFSAAAEQLDTSKGQLSRHVKSLEQMMGCLLMHRTTRRLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+    E+       +  +++ +    G L++    +LG  LL   L++FL  YP++
Sbjct: 61  GQALYEKACEIDSLAYEAERIIKDLTQDNCGTLKLTAPNELGNKLLYPMLEKFLAAYPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L  +    DI     D  +R    + S +LI R L  I     AAP YL   +  L 
Sbjct: 121 KLELCFERSLQDIEFGSFDLGLRTTL-LHSENLIARFLGRIRYGLVAAPMYL-QAQSILH 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             EL  H L++ G+          WL T+  D          ++ ++Y +     + G G
Sbjct: 179 PNELQSHQLLSSGES--------EWLFTLQPDHLCKVAVNPIVKSSNYATTRLLVLNGLG 230

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           IA LP Y++++      L+ I+       + +Y  Y +      KL+
Sbjct: 231 IARLPFYLIEEEVRKRDLIAILPQWQISPYELYMVYAKQRLYPKKLR 277


>gi|323491251|ref|ZP_08096436.1| putative transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323314377|gb|EGA67456.1| putative transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 293

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 130/291 (44%), Gaps = 11/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L++F  V    SFT AA  L L ++++SR+I  LE  +G +LF+R  R L+LT  G   
Sbjct: 5   DLKLFIKVVELSSFTAAANALDLPRANVSRRIGELEQSLGAQLFHRTTRSLSLTNNGEAY 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +    L+    ++  ++ +  G++++    +    L++  L +F   YP +++ +
Sbjct: 65  YENLQKALTMLDAANEQVGNNTNEVRGRIKLGLLPE-TDELVRPILFDFHDQYPHVELDI 123

Query: 127 I-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             ++N   D+     D A      +  S ++ RKL+T+     A+P YLK    P ++++
Sbjct: 124 RNINNGFHDMFQQGLDIAFH-GGALFDSDIVARKLLTLDRCLVASPSYLKTHGVPETLEQ 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H  + F    P    D  W          P+   L  N+   I    +L  GI  +P
Sbjct: 183 LTEHKCVCF--RWPNGDVDNVWHFQEQSVQLNPK---LISNNIGFIKNATILDRGITFMP 237

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +V+   ++ +LV+++        + +  YP+    +   +     +  +
Sbjct: 238 KLLVQRELESGSLVQLLSQYSVTEESGWLLYPQPKTLSQASRLLIEHLIQE 288


>gi|161521528|ref|YP_001584955.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352303|ref|YP_001947930.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345578|gb|ABX18663.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336325|dbj|BAG45394.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 303

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 118/293 (40%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G 
Sbjct: 9   LQCLVAFEAAVRHASFTRAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +   +  +            +L IA +  +    L   L EF   YP+I++
Sbjct: 69  QY--AAQVHHLLTQCAEATHDVMKPYGDLELTIACSSGVAVLWLTPRLPEFRAAYPNIKL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   
Sbjct: 127 RLIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLA--GRTLDAA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+   D   + M    W    D    + +   + +NSY  I+Q  +LG G++L 
Sbjct: 185 DLANETLLRLEDGQRQWMSWSEWFDQNDIDRQKAQPQDITINSYPQIVQMTILGQGVSLG 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             Y++    +   LVR+ +   +     Y   P         + F  ++F +A
Sbjct: 245 WRYMIDACIEAGVLVRVTDASASHGGGYYVISPNDRAQNQAARLFSRWLFEQA 297


>gi|71282259|ref|YP_270635.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147999|gb|AAZ28472.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 323

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 134/296 (45%), Gaps = 10/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L +F  +  +GS T  A Q++L+ +++S  +  LE ++ ++L  R  R L +T Q
Sbjct: 27  MNTSDLNLFIRIVETGSITETANQVNLTPAAVSSALKRLEKQLDVQLLIRTTRQLRITPQ 86

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           LE  +I   ++  K SGKLR++ + DLG+N L   ++E L  +P +
Sbjct: 87  GEQFLFHCRNALASLEQGRISAHQTQGKVSGKLRLSVSSDLGRNTLLPWIEELLEEHPLL 146

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L + +   D  +D  D A+R  KP + SS++  ++ T+     A+P Y+     P +
Sbjct: 147 SIDLTVGDSVSDFYLDQVDMALRFGKP-EDSSMVSFQIATMSRITCASPAYISKYGNPET 205

Query: 183 IQELDKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++L  HN +            E  + L T    +   RIS    N    + ++ V G G
Sbjct: 206 PEDLRNHNCLLHRRAGRLFDHWEYTDSLGTYKIKVNSNRIS----NDTDIVRRWAVSGKG 261

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I       V  +     LV+++    + S  ++   P   + +  + AFR  +  K
Sbjct: 262 IVYRSLIDVYSDLNSGQLVQLLSGYDSSSVELHLICPNREQVSPAVIAFRELLRSK 317


>gi|83749082|ref|ZP_00946088.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83724272|gb|EAP71444.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 330

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE
Sbjct: 25  TMEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTE 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P+
Sbjct: 85  AGSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQYLTEPVCQALARFPN 144

Query: 122 IQIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +QIQ+ +  +  D+     D   + + + +  SSL+ R++V I    YAAP  L      
Sbjct: 145 LQIQVQISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAGRAPL 204

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L     ++  D            A    P+  P    LQ  +    ++  V G G
Sbjct: 205 ATPADLAGWPCLSGPDDASWGFRPA--GAPAAAPLEVPIQPRLQTLNAEMRVRAAVRGLG 262

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A +   +     +   LVR++ D       VY   P       K++ F + +  +
Sbjct: 263 VARMARSVGDAEVETGRLVRVLSDYEPTPLRVYALMPARKLVPRKVRVFLDALEAQ 318


>gi|299067524|emb|CBJ38723.1| putative transcription regulator protein, Lys-R family [Ralstonia
           solanacearum CMR15]
          Length = 318

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 124/294 (42%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AA++L L +SS+S  +S LE ++G++LF R  R L LT+ G
Sbjct: 5   DWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGVRLFERSTRRLRLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +     L   + E +  +  ++
Sbjct: 65  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAARQLAEVVLELMREHAGLR 124

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ +  + +D      D  + + R+P+  S L+ +++  +      AP  L        
Sbjct: 125 IEVDVAPRQVDPLAQGYDIMLTVPREPLPDSGLVAQRVFDLRRAVVVAPALLGRLGPLTH 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +           ++ + A     +  P    ++ ++    +Q  V G G+A
Sbjct: 185 PNQLIDWPCLGLSSES-----EWQFRAPGGETLNLPLDFRMRTSNSELRLQAAVAGLGVA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +      +      L  ++    +P   VY  +P       K+K F + +  +
Sbjct: 240 RITSAFADELIAAGALREVLAGFRSPPMRVYAVFPGRRLMPAKVKVFMDALHRR 293


>gi|194365374|ref|YP_002027984.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348178|gb|ACF51301.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 305

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 140/291 (48%), Gaps = 10/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  +G F+ AA  L ++ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFVRVIETGGFSAAARTLDMTPSAVSKLVARLEQRLGTRLLQRSTRQLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V   LE  +     +  +P G+LR+ + +  GQ+ L   L  FL   P + + L
Sbjct: 71  YERGLRVLADLEEAER-CASAHAEPRGRLRVNSNVPFGQHFLLPLLPAFLERNPQVGVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ ID+     D A+R   P++SSSL+ R+L    M   AAP Y +    P + +EL
Sbjct: 130 TLNDEVIDLLEQRTDVAVRAG-PLKSSSLVARRLGATRMMIVAAPAYAQRHGLPRTPEEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +  G    + M+ +  L      +  P  +  + ++  ++ Q  + G G+A L  
Sbjct: 189 QSHNRLDIGHA--RAMQGWPLLQDGRERMLLPSGNA-RASNGNALRQLVLGGLGLARLAT 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFL 292
           Y V+++     L+ ++E+        V+  +  +      +++AF +F+  
Sbjct: 246 YQVQEDIAAGRLLPVLEEANPGDLEEVHAVFLGQGGYLPLRVRAFLDFLVE 296


>gi|240141342|ref|YP_002965822.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
 gi|240011319|gb|ACS42545.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           AM1]
          Length = 301

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 128/297 (43%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA SG F  AA  L +S ++++R ++ LE  +G +LF R  R + LTE
Sbjct: 1   MDRLQGMRVFVRVAESGGFAGAARALSMSPAAVTRAVAALEAVIGARLFIRTTRSVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++   +     S+  P+G L +   +  G+  +   + ++L  +P 
Sbjct: 61  AGGRYLEDCRRILAEIAEAEAAAAGSTATPTGVLTLTAPVQFGRLYVLPVVTDYLTRHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ +  ++ +++  +  D  +R+   +  S L   ++ ++     AAP YL+    P 
Sbjct: 121 VTVRALFLDRIVNLIEEGIDVGVRIGH-LADSGLTATRVGSVRRVVCAAPSYLERHGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H +I  G   P  + +  W    +        + L  N+  + +   + G GI
Sbjct: 180 TPRDLRDHAVI--GASNPGTLPE--WRFGPEGRTTVGVHARLVCNTVDAALAAALDGWGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L  Y V        L  ++ D       ++   P   +   K +AF +    + R
Sbjct: 236 ARLLSYQVASAVAEGRLRILLTDDEEAPVPIHVVSPGGRRAPAKTRAFVDLAAARLR 292


>gi|254249378|ref|ZP_04942698.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875879|gb|EAY65869.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 327

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 116/295 (39%), Gaps = 4/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R F  V ++GSF+  A+Q  ++ + +SR ++ LE    I+L  R  R + LT
Sbjct: 1   MDM-LENMRTFVRVVQAGSFSAVAKQTDVATAQVSRAVASLEAYAQIRLLNRTTRKIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +       +   ++    E + + V+P G+LR+ T   LGQ+ +      +   +P
Sbjct: 60  DSGRRYFERLQSILGDVDQANAEARNALVRPYGRLRVHTMPGLGQSHVTALAVAYRARFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I++    +  ++  +  D ++     +  S+ I     T      A+P YL     P
Sbjct: 120 EVAIEMTYSQRMPNLVEEGYDVSVVTAASLPDSACIAHSCGTSFSVLVASPAYLARHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +H  +          E                 +    N+  ++      G G
Sbjct: 180 SAPADLARHTCLRLDTPAEANDEWLLHGPGGQTASHAVTAAPFHANAPEALSIALRAGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L  Y   D+     LVR++ D       VY  Y        K++ F   + L
Sbjct: 240 IGSLAIYSAIDDLRSGRLVRVLPDYRLTMLDVYAMYASRRFLDAKVRTFVEHLRL 294


>gi|94310835|ref|YP_584045.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354687|gb|ABF08776.1| Transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 301

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 118/284 (41%), Gaps = 5/284 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     VAR  SF  AA++L +S +++S  ++GLE  + ++LF R  R + LT+ G + 
Sbjct: 8   ELEAVLAVARRNSFRGAAQELGMSTTAVSSAVAGLEARLKVRLFNRSTRSVALTDAGLRY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +     +++   E       PSG LRI         LL      +   YPD++I +
Sbjct: 68  VERIAPALAAIKSAGEEAGSGPDVPSGTLRINAPQGAANLLLAPLFNVYAQRYPDVRIDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +++ ID+  +  D  IRL + +    +       + M   A P YL++   P   ++L
Sbjct: 128 VSESRMIDVVAEGFDAGIRLAESVPQDMIAVPLSRDVRMLVVATPAYLEHHGTPRHPRDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I          +    L    + +       + +N   +I Q  +LG GI  + +
Sbjct: 188 LQHRSIGMRMSHGGIYQWE--LEHKGQKLQMDLPVRIALNEMPAIRQALLLGLGIGFISE 245

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           + ++D      LV ++         +   Y        +L+A  
Sbjct: 246 WFIEDELKTGALVPVLAPWCPSFGGLRLYYSGHRFVPARLRALV 289


>gi|332525106|ref|ZP_08401285.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332108394|gb|EGJ09618.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 316

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 113/293 (38%), Gaps = 5/293 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              ++VF  V   G F  AA  L ++   ++R ++ LE  +G +L  R  R + LTE G 
Sbjct: 4   LRAMKVFVRVVDEGGFARAARALDMAPPVVTRVVAELEAHLGARLLNRTTRRVALTEVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   ++       ES+ + SG LR+     L  + L  +L  F   +P + I
Sbjct: 64  SYLERARRILADVDEADALAGESTRELSGPLRLLCPSALAAHQLVRHLARFSAQHPRLSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+   + ++   +  D  +   +       + R+L    +   AAP YL     P   +
Sbjct: 124 DLVSPCR-VETVDEDYDVTLLTLRGPIDGDFVARRLARSEVLLCAAPGYLARHGRPRHPR 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H L+    + P+ +  F   A        P +   L  +   + +     G G+A 
Sbjct: 183 DLARHELLFQPGVQPRGLVFFRGDAGEAAETVVPEQAGALHCDDLQTQLAAAQAGLGVAA 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP  ++ +      + R++        +++   P       + +A   F+   
Sbjct: 243 LPTLMLDEALAAGRVERVLPSWRLAGLSIWAAMPSRKHVPARTRALIEFLVQA 295


>gi|241663943|ref|YP_002982303.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240865970|gb|ACS63631.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 302

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 124/295 (42%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE 
Sbjct: 1   MEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEAALGVRLMTRTTRQLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   + ++ +L     +   +S   +G LRIA   ++G   L   +   L  YP +
Sbjct: 61  GSHFYDDIAPLFERLREVHADTTAASETVAGTLRIAAPYEVGAQHLTEPVCRTLEKYPHL 120

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+ +  +  D+     D   + + + +  SSL+ R++V I    YA+P  L       
Sbjct: 121 QIQVHISWEQPDLLASGYDIVFVMVDQVLPDSSLVARRVVLIPRGLYASPTLLAERPPLK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L     ++  D                 PI  P    LQ  +     +  V G G+
Sbjct: 181 TPADLAGWPCLSGPDDASWAFRPVG--EPTAEPIEVPIQPRLQTLNAEMRARAAVRGLGV 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A +   +         LVR++ D    +  VY   P       K++ F + +  +
Sbjct: 239 ARMARSVGDTEVAAGRLVRVLPDFELTALRVYALMPARKLVPRKVRVFLDALEAE 293


>gi|152989245|ref|YP_001349416.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964403|gb|ABR86428.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 302

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 133/295 (45%), Gaps = 9/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA +GSFT AA  L ++ +++S+ I+ LE E+ +KLF+R  RG++L+E G + H
Sbjct: 10  LHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYH 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T + Y  L   +  L ES  +PSG LRI+        L    L  F+  YP +Q+++ 
Sbjct: 70  EQTEQPYRDLLRAREALGESLEEPSGHLRISALHLAKHLLTAPLLGAFVQRYPKVQLEIR 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +DI  +  D  IRL   +Q   +  +    +     A P YL     P ++  LD
Sbjct: 130 YEDQLVDIVREQLDAGIRLADALQPGMVGVQLTPPLACLLVATPAYLAERGTPAALDGLD 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL--P 245
            H  + F       +  +  L    R +     +        +I++    G+GIA +   
Sbjct: 190 GHVAVRFRFPRSGRLHKWR-LREGAREVEADLPARFVSTDTEAIIEAARAGAGIAQVFIR 248

Query: 246 DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           + +  D     LV ++     P   ++  Y        KL+A    +    R+W+
Sbjct: 249 ERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKLRALIELL----REWR 299


>gi|71907157|ref|YP_284744.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB]
 gi|71846778|gb|AAZ46274.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 313

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 118/274 (43%), Gaps = 7/274 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L++S  +++R I+ LE  +GIKL  R  R +  T+ G +    +  +  + +      
Sbjct: 24  RRLNMSPPAVTRTIAALEEHLGIKLLTRTTRFVRATDAGQRYLESSRRILAEADEADEAA 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
                 P G+L +   +  G   +   + EFL  YP++ +  +  ++ +++  +  D  I
Sbjct: 84  AGVHAAPRGQLTVTAPVLFGGMHVMPGIVEFLTRYPEVSVNAVFLDRVVNLLEEGIDVGI 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R+ + +  S++    + ++     A+P YL    E    ++L   ++I    + P     
Sbjct: 144 RIGE-LPDSTMRAIPVGSVRRVICASPDYLTRHVELKEPRDLAGQSIIAASPISPSSEWR 202

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
              L    +PI       L V +  + ++  ++G GI  L  Y V  +     L+R+  +
Sbjct: 203 ---LGNGKQPISVKVQPRLTVTNNAAAIEAALMGFGITRLMSYQVAAHLASGQLIRLFPE 259

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              P+  ++  + E    + K++A  + +  + R
Sbjct: 260 YEPPALPIHIIHLEGRLASAKVRALVDVLVERLR 293


>gi|262403219|ref|ZP_06079779.1| transcriptional regulator [Vibrio sp. RC586]
 gi|262350718|gb|EEY99851.1| transcriptional regulator [Vibrio sp. RC586]
          Length = 296

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 136/297 (45%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWIQSVKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKTQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQLI       +   + D  I R  + + S S     L       YA+P YL+    P
Sbjct: 121 IRIQLITT-TPGQLPELHLDLFISREIEQLNSLSFKATPLFEHQAGFYASPSYLQKQGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++QEL +HN++ +G+   + +++        +             +  ++      G G
Sbjct: 180 KTLQELTQHNVLCWGEQTFREVKNA-------QGKRITLTGNFATTNPEALFYAGKSGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +    ++K+     NL+RI+ D+     TVY  YP+      + + F +++  K 
Sbjct: 233 VIVTGHIMIKEELKQGNLMRILPDITVDEATVYAYYPKLEYQHTRTRLFVDYLKEKL 289


>gi|167033915|ref|YP_001669146.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860403|gb|ABY98810.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 300

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 121/293 (41%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A  QL + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  + E     +   S +P G+LR++  + L    L   +  FL  YP +Q
Sbjct: 63  ERYLHHCQAMLLEAEAADETVASMSSEPRGRLRVSCPVALAHAFLPDVISRFLEQYPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++L N+ +D+  +  D A+R+R    +  +L+ R+L    M   AAP +  + REP  
Sbjct: 123 LDMVLINRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIREPGE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L        G      +  F  L    +         L ++ ++        G G  
Sbjct: 183 LASLP-----VLGAAEADRLVHFRLLGPDGKQQEIALEPRLAIDDFVVRNAAVRAGLGFT 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP    ++      LVR++ D   P   +   YP        ++ + + +  
Sbjct: 238 ALPSMFCEEELERGELVRLLPDWSLPGGYLQAVYPHRRGLLPAVRVWIDHLAA 290


>gi|304320565|ref|YP_003854208.1| LysR family transcriptional regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303299467|gb|ADM09066.1| transcriptional regulator, LysR family protein [Parvularcula
           bermudensis HTCC2503]
          Length = 296

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AAE+L+++  ++S+Q+  LE  VG+ LF+R A+GL LTE G 
Sbjct: 7   LNSLRAFEAAARHLSFTKAAEELNVTPGAVSQQVKLLEETVGVSLFHRGAKGLVLTEGGI 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  + + +L+     + +     SG+L ++         L   L  F   +PDI +
Sbjct: 67  AALPSLRDGFDRLDAGVRLMGQQRG--SGRLAVSVAPSFASKWLVPRLDRFQERHPDIDV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D   ID SMD  D AIR  +      L  ++L+   +    AP  L        I 
Sbjct: 125 YVHADMDLIDFSMDDVDVAIRYGQG-TYPDLDVQRLMNEKIVPVCAPKLLTAEPPLKKIG 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+       +      WL      +   R    + N    +++  V G G+AL 
Sbjct: 184 DLAHHTLLHDNGNDHEIATWPMWLKAAGARVDGTRGP--RFNQSSLVIEAAVAGRGVALA 241

Query: 245 ---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                    +   LV   +      F  +  +P A     ++KAF+++I  +A
Sbjct: 242 KYALAEADLEAARLVIPFDLTSPTDFAYWLVHPHAKAALPEVKAFKSWIVEEA 294


>gi|26989584|ref|NP_745009.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|148548038|ref|YP_001268140.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|24984463|gb|AAN68473.1|AE016479_13 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
 gi|148512096|gb|ABQ78956.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 300

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 120/293 (40%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A  QL + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  + E     +   S +P G+LR++  + L    L   +  FL  YP +Q
Sbjct: 63  ERYLHHCQAMLLEAEAADETVASMSSEPRGRLRVSCPVALAHAFLPDVISRFLEQYPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++L N+ +D+  +  D A+R+R    +  +L+ R+L    M   AAP +  + REP  
Sbjct: 123 LDMVLLNRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIREPGE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L        G      +  F       +         L ++ ++        G G  
Sbjct: 183 LASLP-----VLGAAEADRLVHFRLFGPHGKQQEIALEPRLAIDDFVVRNAAVRAGLGFT 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP    ++      LVR++ D   P   +   YP        ++ + + +  
Sbjct: 238 ALPSMFCEEELERGELVRLLPDWSLPGGYLQAVYPHRRGLLPAVRVWIDHLAA 290


>gi|119899918|ref|YP_935131.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119672331|emb|CAL96245.1| transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 295

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 127/299 (42%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L     V  +GS T AAEQL  + S +SR +S LE ++ + L  R  R L LT
Sbjct: 1   MKTTLDELLALTRVVDTGSITAAAEQLGQTTSGVSRALSRLEEKLEVTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+        +   +E  + ++     +P+G+LR+        +++   +  F   YP
Sbjct: 61  EEGATFLAQARRILASVEEAEEQMALRRQQPAGRLRVNAASPFMLHVVVPLVAGFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L   ++ ID+     D AIR+   ++ S+L  R L    +   A+P YL     P
Sbjct: 121 QIELELNTSDQIIDLLEQRTDVAIRIGA-LRDSTLHARPLGANRLRVLASPAYLARRGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H L+ F            W               L+ +S  ++ Q  + G G
Sbjct: 180 QSVDDLAGHELLGFTQPDSLN----QWPLRTADGDSWTITPSLRASSGETLRQLALEGGG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  L D++   +     LV ++E         V+  Y        ++  F +++  + R
Sbjct: 236 IVCLADFMTAQDRAEGRLVPVLEAHTVEVRQPVHAVYYRNTALASRIGCFLDYVGERMR 294


>gi|107024158|ref|YP_622485.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116688515|ref|YP_834138.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105894347|gb|ABF77512.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116646604|gb|ABK07245.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F  V    SF+ AA +L ++ SS++R+I  LET++GI+L +R    L  TE G  L
Sbjct: 8   HLALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   + +  +L   Q +L     +P G LR+      G+  L   L  F+  YP +Q+ L
Sbjct: 68  YGRATRMLAELRGLQEDLHSQHDEPGGLLRVDCPAPFGRRHLMAALAAFMQRYPALQVDL 127

Query: 127 ILDNKDIDISMDY----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +L +  +D+         D A+R+  P++ +  +   L        A+  YL  C EP S
Sbjct: 128 VLTDSMVDLQGARLGSDVDLAVRIG-PLEDTRFVATVLAPQRRVLCASAAYLARCGEPAS 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  H+ + +    P     F     V      P     + N   ++++  + G G+A
Sbjct: 187 PDALGGHDCLAWHGAPPPGAWRFGERRHV------PAQPRFRSNHSEALLEAAIDGLGLA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++V D   +  L  ++          T++     A   + +      F+
Sbjct: 241 HLPTWLVADALRDGRLRALLPQYAAAPEPATIHVLRQHAR-GSARTSRLVAFL 292


>gi|329296359|ref|ZP_08253695.1| DNA-binding transcriptional activator GcvA [Plautia stali symbiont]
          Length = 305

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 124/293 (42%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F L YP I +
Sbjct: 68  SYYLDIKEIFSALNDATRKLQARSA--KGALTVSLLPSFAIQWLVPRLSSFNLAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D AI   +      L   KL   ++    +P  L       S  
Sbjct: 126 RIQAVDRDEEKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDNPLKSPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          +  +++  +       +   +  +    ++Q  + G G+AL 
Sbjct: 185 DLAHFTLLHDASR----RDWQSYIRQLGLQHINVQQGPI-FSHSAMVLQAAIHGQGVALA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 240 NNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILEKA 292


>gi|85710962|ref|ZP_01042023.1| LysR-family transcriptional regulator [Idiomarina baltica OS145]
 gi|85695366|gb|EAQ33303.1| LysR-family transcriptional regulator [Idiomarina baltica OS145]
          Length = 295

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 126/292 (43%), Gaps = 6/292 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS    ++L  F   A   SF  A+++L+L+ S++S  +  LE  +  +L  R  R ++L
Sbjct: 1   MSLPPMNELLAFQKTASRLSFKKASDELNLTPSTVSHLVRSLEERLKTRLLNRTTRSVSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G KL    + + + L     EL     +P+G +RI+        LL    KEF   +
Sbjct: 61  TEPGQKLFGQLNSILNNLTQAVDELDTDDKQPNGTIRISVNEIAAPILLDKLGKEFRETF 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++ ++LI+DN+ ID   +  D  IRLR  +    +    +        AA  Y++    
Sbjct: 121 PNVHVELIVDNRLIDTVAEGFDAGIRLRDTVPQDMVAVPVIKDFRFVVAAATTYIEKHGL 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L +HN I F     +  E        D+ +       +  N+   IM+    G 
Sbjct: 181 PTQPSDLLEHNCIGFRFQSGRLYEWE--FKRKDKRMVIDVKGTMTTNNPGLIMKAVKNGV 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GI  + + ++K   ++  L  +++D       +Y  +P        L+A  +
Sbjct: 239 GIGHIAEPLIKKEVESKELTVLLDDWNPGWPGLYLYFPRNRHMPSGLRAVID 290


>gi|127511270|ref|YP_001092467.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126636565|gb|ABO22208.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 307

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 124/298 (41%), Gaps = 8/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F  VA  GS + AA +L +S +  S  +  LE E+   LF R  R L LT+ 
Sbjct: 1   MQVNDLLLFVRVADCGSLSGAAVELEISAAVASASLKRLEKELDTVLFIRSTRSLRLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L   +  L  +  + +GKL +A   D G+N +   L   +  YP +
Sbjct: 61  GERYLSYCRRALEDLRLGEQALACAKSQIAGKLSVALPSDAGRNYILPWLDHLMDEYPRL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L L +   +   D  D A+R   P + SSL+  K+ +      A+P Y+     P +
Sbjct: 121 QLRLHLADSLTNFYHDKIDVALRSGTP-KDSSLVAFKICSAQRILCASPEYIAVHGRPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
           + +L+KHN + F  ++ +   D  W    D      R+S  +  N      ++ + G GI
Sbjct: 180 LSDLEKHNCLFF--MLDEKTHD-QWCFYRDGQSHRVRVSGNRTCNDAEVARKWALAGKGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                  + D+     LV ++      S  +Y   P     T  +   R  +  + + 
Sbjct: 237 VYKSSLDLADDLASGALVPLLTQYSGESADLYLVCPGRQHVTPLVLTLREHLRQRCQQ 294


>gi|221210925|ref|ZP_03583905.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221169881|gb|EEE02348.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 303

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 118/293 (40%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G 
Sbjct: 9   LQCLVAFEAAVRHASFTRAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +   +  +            +L IA +  +    L   L EF   YP+I++
Sbjct: 69  QY--AAQVHHLLTQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPEFRAAYPNIKL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   
Sbjct: 127 RLIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLA--GRTLDAA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+   D   + M    W    D    + +   + +NSY  I+Q  +LG G++L 
Sbjct: 185 DLANETLLRLEDGQRQWMSWSEWFEQNDIDRQKAQPQDITINSYPQIVQMTILGQGVSLG 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             Y++    +   LVR+ +   +     Y   P         + F  ++F +A
Sbjct: 245 WRYMIDACIEAGLLVRVTDASASHGGGYYVISPNDRAQNQAARLFSRWLFEQA 297


>gi|254248915|ref|ZP_04942235.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875416|gb|EAY65406.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 325

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 117/295 (39%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G 
Sbjct: 31  LQCLVAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGE 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +   +  +            +L IA +  +    L   L  F   YP+I++
Sbjct: 91  QY--AAQVHHLLTQCAEATHDVMKPYGDLELTIACSSGVAVLWLTPRLPSFRAAYPNIKL 148

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   
Sbjct: 149 RLIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLA--GRTLDAA 206

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+   D   + M    W    D    + +   + +NSY  I+Q  +LG G++L 
Sbjct: 207 DLANETLLRLEDGQRQWMSWSEWFDLNDVDRQKAQPQDITINSYPQIVQMTILGQGVSLG 266

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             Y++    +   LVR+ E   +     Y   P         + F  ++F +A  
Sbjct: 267 WRYMIDACIEAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWLFEQAEQ 321


>gi|187930592|ref|YP_001901079.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187727482|gb|ACD28647.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
          Length = 298

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 123/286 (43%), Gaps = 6/286 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R +  LE  +G+ LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTVGRHVDALERALGMSLFLRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                   G +RI  +  +   +L   L +    YP++ +
Sbjct: 68  SLRPFAESLEATSAALLRAASSQGEGVRGTVRITASEVVAVEVLPPILADLHAAYPELTL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N+  D+    AD A+R++ P Q   L+ R +  I +  +A   YL     P +++
Sbjct: 128 ELVPSNRMEDLLRREADIAVRMQPPSQ-GVLVARHIGAIELGIFAHRRYLAQRGTPSTVE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H LI +             L  V R         L+ +S L+ +     G GI   
Sbjct: 187 ELAAHTLIGYDKENAFLRSMRAQLPWVQR-----NRFALRTDSDLAAIAALRAGFGIGFC 241

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +V++N +LVR+  D I+ +   +    E L+++ + +   + +
Sbjct: 242 QIGLVRNNADLVRLFGDQISITLDTWLAMHEDLRDSPRCRVVFDAL 287


>gi|323965226|gb|EGB60684.1| LysR substrate binding domain-containing protein [Escherichia coli
           M863]
 gi|327254588|gb|EGE66204.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Escherichia coli STEC_7v]
          Length = 299

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 124/301 (41%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA   +F+ AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPIFIAVAEESNFSKAAARLGVTRSAVSQGIRRLEDAFGTMLVMRTTRSVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +LH+  S     +E    E+    V P G LRIA T    + L    +  F    P
Sbjct: 61  EAGERLHKSLSLPLSGIEAAFEEMVSDHV-PRGHLRIAVTSIAEEFLSGPLIASFAAANP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +++ +++ DI     D  +RL + I+   +             A+P YL     P
Sbjct: 120 AVTLDIVVTDEEFDIVTAGYDAGVRLGEVIEKDMIAVPLTGKQREMVVASPSYLAANSTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +EL  H  I +          +       R         +  N    +++  + G G
Sbjct: 180 VHPRELVNHKCIGWRQSPEVAPYRWP-FEENGRAFDLAIEPQITTNDLRLMLRLALAGGG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I +      +   ++  LV +++D +      Y  +P+      KL+A  + +    ++W
Sbjct: 239 ITIATQETFRPYIESGKLVSLLDDFLPQFPGFYLYFPQRRNIAPKLRALIDHV----KEW 294

Query: 298 K 298
           +
Sbjct: 295 R 295


>gi|238763792|ref|ZP_04624750.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238697922|gb|EEP90681.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
          Length = 303

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 127/290 (43%), Gaps = 5/290 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R F     +G F+ AAEQL LS+S++ + ++ LE  + ++LF R  R L+LT++G 
Sbjct: 7   LNGIRAFVQAVDAGGFSRAAEQLGLSRSTVGKAVARLEERLSVRLFQRTTRSLSLTDEGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +         L+    +L   +V PSG+LR++  +  GQ  +   L      YP ++I
Sbjct: 67  IFYADCVRALAALDAATTQLAARAVAPSGRLRVSLPVLFGQQWVLPVLLTLADKYPALEI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +  N+ +D +    D  +R+ +   +  L  RKL         +  Y      P   Q
Sbjct: 127 EALFSNQRVDFAEAGIDLVVRIGETGDAVGLTARKLGEQQQVLCGSTAYFTAYGYPQDWQ 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H  I  G L     E +       +      +S L+ ++  ++    + G G+ALL
Sbjct: 187 ELTEHRTI--GQLQNGHNEPWRLWDNHGQIHWMSPVSRLRFDNLAAVATAVLAGQGVALL 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P ++V D   +  L  I+     P   +   + +      +L+   + + 
Sbjct: 245 PRWLVGDALRSGQLQEILPGSTGPGLPINVVWLKGGVMPARLRVAIDALV 294


>gi|254563116|ref|YP_003070211.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254270394|emb|CAX26392.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens DM4]
          Length = 302

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 120/299 (40%), Gaps = 13/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  VA +G F   A     S S +S  +  LET +G++LF R  R +  T
Sbjct: 1   MAMDLGDLAAFVSVAEAGGFREGARASGTSASGLSEAVRRLETRLGVRLFNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    +    ++E     +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGARLLERLTPALGEVEAALDVVNGFRDRPAGTLRLNVPVSAARLVLPRIVPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI++ ++ ++  +D+     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 DIRLDVVAEDSFVDVLAAGCDAGIRYDERLEQD-MIAVPIGPRQQRFATAAAPAYLDRHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSY-LSIMQY 234
            P    EL  H  I         +    W    D  +     S    ++V +     +  
Sbjct: 180 HPQHPSELLDHACIGGRFASGATI---AWEFERDGEVVRVNPSGPLIVRVGAATDLAVDA 236

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V G GI  L +  ++   D+  L  ++E    P    +  YP        L+AF +FI
Sbjct: 237 AVAGVGIITLFEDWLQPHLDSGALEPVLEPWWQPFPGPFLYYPGRRYLPAPLRAFIDFI 295


>gi|255292726|dbj|BAH89832.1| LysR family transcriptional regulator [uncultured bacterium]
          Length = 298

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 132/298 (44%), Gaps = 10/298 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+LR F   A++GSFT AA QL +S    S+ ++ LE  +G +L  R  R + LT 
Sbjct: 1   MDIVDELRAFVATAQTGSFTAAAHQLGVSNRLTSKYVAALEQRLGSRLLQRTTRKVGLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +   L+     + E S   +G +RI+  +  G+  + G L  F    PD
Sbjct: 61  AGEDLIARAPALLDDLDELLGSVAEGSRGLTGVIRISAPVTFGEVYVTGMLARFARQNPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L LD++ +D++ D  D A R+ +     SL   +L T      A+P Y++   +P 
Sbjct: 121 LTLDLRLDDRYVDLASDGFDLAFRIGRS-DMLSLKTLRLGTFSSLLVASPDYVRAHGKPG 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S +EL  H  I    +         W+   +      +I    QVNS  + M   + G G
Sbjct: 180 SPEELADHTCI----VDTNRRVPHRWIFVRNGVETNVQIHGRFQVNSARAAMDLAIGGLG 235

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA +P +      +  +LV ++E+    S  V   Y E      K++A  +F     R
Sbjct: 236 IANIPRFALSNAIETGSLVPLLEEFGGDSGPVSAAYLEGRALPRKIRALIDFAAEDIR 293


>gi|255588015|ref|XP_002534475.1| HTH-type transcriptional activator aaeR, putative [Ricinus
           communis]
 gi|223525223|gb|EEF27905.1| HTH-type transcriptional activator aaeR, putative [Ricinus
           communis]
          Length = 319

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 129/287 (44%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A  GS++ AA +L +S S++S+ I+ LE  +GI LF R  R L LT +G 
Sbjct: 9   LTGLIAFAKAAALGSYSAAARELGVSPSAVSKSIARLERHLGIPLFIRTTRSLRLTHEGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +  + E  Q     +   PSG +R+A    +G ++L   L  F   +P + +
Sbjct: 69  ALQERAMRLLQEAEEIQQAAISTRNGPSGVIRVAAPYPIGVHVLGPALTRFRERHPGLMV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++  D+  +  D AIR+   I  S LI R+L    + A+AAP YL     P   +
Sbjct: 129 DLRIRDQMADLISEGIDIAIRVGD-IPDSRLISRRLAPHRVCAFAAPGYLARKGTPRHPE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H+ + F        +   W   +D  + E    + +  +    +    + G GI +
Sbjct: 188 ELSGHDCVNF--RFQSSGQALRWPFAMDGEVIEIAPHAGIVADVSDVVASIVIAGGGIGI 245

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +P Y+   +     LV +M       + +   +PE+ + +  +KAF 
Sbjct: 246 MPTYLAAPHVGRGELVPLMTRFAVTRWNITALWPESRRASPNVKAFL 292


>gi|296157721|ref|ZP_06840555.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295891967|gb|EFG71751.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 304

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVILGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  + +  + EL       +G L ++     G+  +      FL   P+
Sbjct: 61  DGAAFLERCRGLLIEWDQAENELSAGRRAINGHLIVSAPAAFGRKHVAPLAPAFLADKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 LQVSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++++L +HN + F     +  ++  W    +  +   R+   L  N    + ++   G G
Sbjct: 180 TLEDLPQHNCLAFNL---QGGQNRGWYFRRNGKLATVRVGGTLDCNDGELLHRWVSEGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + ++       L  ++++   P + +   YP+      K++ F +++
Sbjct: 237 LGWRSTWEIQQQLARGELETVLDEFALPDYDILAVYPQQRYVPAKVRYFIDYL 289


>gi|296102899|ref|YP_003613045.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057358|gb|ADF62096.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 300

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 128/286 (44%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  +  +GS + AA QL  +Q+++SR++  LET +G++L  R      LT+ G + +
Sbjct: 1   MRTFVRIVEAGSLSAAARQLATTQATVSRRLQSLETMLGVRLILRTTHTTRLTDDGERCY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    V       + E+ ++  +P G LR+      GQ+ L   L EFL  YP + I+ +
Sbjct: 61  QHARRVIDSWLALEDEVGQTEDEPVGVLRVRAPHAFGQDQLLKPLTEFLQRYPQLSIEWM 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++  D   D  DCAIR+   +   + +   L  +     A+P  L       + ++L 
Sbjct: 121 LNDRSADFLGDNLDCAIRVGVEV-DPATVSVLLAEVPRSVVASPALLARFPAVNTPEDLQ 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +   I       + +E F+  +     +       L  +S        + G G+A++  +
Sbjct: 180 QLPWIAISSFYQRHVELFHDASPATARVAI--TPRLSTDSLYVARNTALTGLGVAVVSSW 237

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V+++     LV ++ +    +  V+  YP +     +L+ F   +
Sbjct: 238 TVQEDIREGRLVHLLPEWQPAALPVHLVYPWSRYYPARLRRFLELM 283


>gi|271499880|ref|YP_003332905.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343435|gb|ACZ76200.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 297

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 123/285 (43%), Gaps = 4/285 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ I  +E  +G++L  R  R +  TE G +L
Sbjct: 8   DLTAFVVVAEERSFTKAALRLGMAQSALSQIIRRVEERLGLRLLARTTRSVAPTEAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H L+     L +   +PSG +R+ T     + +L   +K  L   P+I I++
Sbjct: 68  LAKLGPMLHDLDLMISSLGDLRNRPSGTIRLTTVEHAAKTILMPAIKRLLPENPEIHIEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D+  +DI  +  D  IRL   I    +  R    I M   A+P YL     P    E+
Sbjct: 128 NVDHALVDIVANQFDAGIRLGGEIDRDMIAMRIGPDIPMAIVASPAYLTRFPAPKIPTEI 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN+I F       +  +  L +  R I       L VN+   ++   + G G+  +  
Sbjct: 188 VNHNVINFRLPTSGTVIGWR-LMSDGREIKVKGKGQLVVNTIELLVNAVLDGHGLGYIHL 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             V+   D+  L+++++         +  YP    ++        
Sbjct: 247 DQVQGFIDSGELIQVLDKFTPDIPGYHLYYPNRRHHSSAFSLLVE 291


>gi|242241068|ref|YP_002989249.1| DNA-binding transcriptional regulator [Dickeya dadantii Ech703]
 gi|242133125|gb|ACS87427.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 314

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 120/294 (40%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   G+FT  A QL +S S++S+ I+ LE E+ +KL  R  R + LTE G 
Sbjct: 4   LKSMSVFAKVVEFGTFTATARQLGMSVSAVSQTITRLEDELQVKLLNRSTRSIGLTEAGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     + H+      +L   +    G LRI ++  + QN+L     + L  YP + +
Sbjct: 64  IYYYGCRRMLHEANEVHEQLYAFNNTLIGTLRIGSSSTMAQNVLSVMTTDLLRQYPGLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR+   +Q SSL   +L ++ M   A   YL     P    
Sbjct: 124 NLVCGIPAPDLIADGLDIVIRVGA-LQDSSLFSTRLGSMPMVVCATKRYLAVHGTPEKPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + + +         +F  +A                N   +++++   G+GIA +
Sbjct: 183 DIGNLSWLEYSVRPDS---EFELIAPEGITTRITPQGRFVTNDPQTLIRWLQGGAGIAYV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P   V ++    ++  +     +    VY  Y        K++   +++    R
Sbjct: 240 PLMWVLEDIRRGDMEILFPRYHSDPRPVYALYTRRDNLPLKVQICIDYLTEYFR 293


>gi|254502060|ref|ZP_05114211.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438131|gb|EEE44810.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 314

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 118/296 (39%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +    F  V   G F+ AA  L++ +S +SR++  LE ++G++L  R +R +T T+ 
Sbjct: 9   MDLNDAFYFVQVVEKGGFSAAARLLNIPKSRLSRRVRQLEEDLGVRLLQRTSRIVTTTDI 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +R   +   + E  +  ++  + +  G + ++ ++ + Q  L   L  FL  YP +
Sbjct: 69  GEEYYRHAQKALAQFEIAETAVRRKTNRIEGTVTMSCSVGMAQFGLDQILPRFLQEYPGV 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +     N+  D+     D AIR     +  SSLIQ +L  +  H + +P Y        
Sbjct: 129 TVVQRASNRMEDLIKGGIDMAIRGHMDTLPDSSLIQVRLARVEWHMFCSPDYQGILDPSD 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L  H  +  G   P     +       +    P       +   ++     L  G+
Sbjct: 189 DPAGLANHPALILGR--PGATHQWLLTDGDGQSASVPCRVRFASDDMSTLKNAAALSLGL 246

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             LP Y+ +   +  +LVRI+      +  +    P         +   +F+  + 
Sbjct: 247 VALPSYVCRPEVEAGSLVRILPGWTAGTPQISLLMPSREGLLPAFEVLLDFLKREL 302


>gi|208779932|ref|ZP_03247276.1| LysR substrate binding domain protein [Francisella novicida FTG]
 gi|254374677|ref|ZP_04990158.1| hypothetical protein FTDG_00852 [Francisella novicida GA99-3548]
 gi|151572396|gb|EDN38050.1| hypothetical protein FTDG_00852 [Francisella novicida GA99-3548]
 gi|208744387|gb|EDZ90687.1| LysR substrate binding domain protein [Francisella novicida FTG]
          Length = 298

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LET+    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKAIGISPPVVSKQIQILETKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 64  LLYEKASLILNELEATEEKIFAEDILIDSELKISAPNSFGIKYLCNIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+ +     A+  YLKN   P +I+
Sbjct: 124 NINLSDSYINIIDEDFDLVIRIGA-LDDSNLITKKLMPMPSLLCASEQYLKNYGIPKTIK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  I + +       +   L +V++         +  NS   ++Q C+ G GIA L
Sbjct: 183 DLENHLFIQYNN---HSSSNRIILESVNKTEIINVRQRIVTNSAEMMLQGCLDGLGIAKL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           P + + D   +  LV ++ D   P    +Y           K++    +I
Sbjct: 240 PLFEIIDKIHDKKLVHLLPDARNPIEKNLYLISSRDKYRLKKVRLLSAYI 289


>gi|221065919|ref|ZP_03542024.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710942|gb|EED66310.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 306

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 122/293 (41%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L  F ++++ GS   AA+QL ++  ++S++++GLE  +G +L +R  R ++LT 
Sbjct: 1   MDGFSDLAFFAMLSKEGSMRGAAQQLGVTGPAVSKRLAGLEARLGARLMHRTTRRMSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +       +  +L   +  +   +  P G +R+  +   G+  +   L  F   +P+
Sbjct: 61  EGERYLVEGGRLLTELGALERAIGGVAAVPQGLIRVNASFGFGRKHIAPALGVFARRFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL L ++  ++  D  D  IRL   +  S    R L        A+  YLK   EP 
Sbjct: 121 VEVQLHLSDRPANLIEDNFDVVIRLGD-MPDSRWTARVLARNRRVLCASALYLKEAGEPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + QEL +H  +   +           L    +         L  N   S   + + G GI
Sbjct: 180 TPQELARHACLFIREGDEAFGTWH--LRNGSQTETVKVRGPLSANDGESASAWAMAGHGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +  ++ V        L  ++ +   P   VY  +        K KA  + + 
Sbjct: 238 LMRSEWEVGALIREGLLKVVLPEWRLPPADVYVQFHGGAHLPAKTKALVDHLV 290


>gi|117621405|ref|YP_855688.1| DNA-binding transcriptional activator GcvA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562812|gb|ABK39760.1| glycine cleavage system transcriptional activator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 306

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 120/291 (41%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AAE+L ++Q++IS QI  LE  +GIKLF R  R L LTE+G 
Sbjct: 8   LNALKAFEAAARHLSFTRAAEELFVTQAAISHQIKALEEYLGIKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  +     +L   S    G L ++         L   L +F   +PDI +
Sbjct: 68  GYFLDIKDIFTSISEATDKLLARSA--KGALTVSLQPSFAIQWLVPRLVKFSERHPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL T ++    +P  L   +   +  
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLHTEYLIPVCSPLLLTGPKPLRTPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+          +   W   +D          +  +    ++Q  + G G+AL 
Sbjct: 185 DLTRHTLLH----DTSRRDWKAWFRQLDIDAPNVNQGPI-FSHSTMVIQAAIHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + +   +   L+   E V+      Y    E   + GK+ AFR+++  
Sbjct: 240 HSVLAQPEIEAGRLICPFEQVLVSKNAFYLVCQEQQSDQGKIVAFRDWMLE 290


>gi|53723424|ref|YP_102835.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|52426847|gb|AAU47440.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
          Length = 304

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 128/302 (42%), Gaps = 12/302 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++L
Sbjct: 1   MKRDPLGGLHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G + +  T++ Y ++   +  L ++  +P G LRI+        +    L EF   Y
Sbjct: 61  TEAGQRYYDATAQPYRQVVDARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFRRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + +++  ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     
Sbjct: 121 PKVSVEIRYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGV 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P  + +L +H  I F    PK      W     R   E  +          +++     G
Sbjct: 181 PAKLADLARHMCIRF--RFPKSGRLHKWPLRDGRRDVELDVAGRFVSTDTGAVIDAARAG 238

Query: 239 SGIALLPDYI---VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +GIA +  ++   ++D+     L  ++         ++  Y        KL+AF   +  
Sbjct: 239 AGIAFV--FMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLRE 296

Query: 293 KA 294
            A
Sbjct: 297 HA 298


>gi|270265343|ref|ZP_06193604.1| LysR-family transcriptional regulator [Serratia odorifera 4Rx13]
 gi|270040747|gb|EFA13850.1| LysR-family transcriptional regulator [Serratia odorifera 4Rx13]
          Length = 298

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 5/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +L +F  V  +GSFT AA  L  +++ +S  +  LE+E+G+ L  R  R L LT+ 
Sbjct: 2   LNLQRLAIFVAVVDAGSFTAAAVTLGQTKAVVSFNVKQLESELGVSLLVRSTRRLALTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++    +    E    +++      SG LRI TT + G  ++   L  F  L+P +
Sbjct: 62  GERFYQRCLRLLQDAENVLDDVRRDHHGLSGVLRITTTPEYGAQVVVPALAAFSRLHPRL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQ +  +   D+  +  D AIRL + +  SS     + +  +   AAP YL       S
Sbjct: 122 RIQHVSSSYHADLISERFDVAIRLGQ-LADSSHRAALIDSFAILPVAAPDYLARHPV-GS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +   I    L                       + L  +S  +++ + + G+G+A
Sbjct: 180 LTQLAQAQWIAHSRLSSPLSWQVITPQRQAVLFKVEDAATLMGDSAAALLAFALHGAGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP+++V+       L  ++ D   P+ ++Y  YP       K++AF +F+  + 
Sbjct: 240 LLPEWLVRPAIAEGKLCALLADHQFPAQSIYALYPNTRHVPEKVRAFIDFLRERV 294


>gi|317046609|ref|YP_004114257.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316948226|gb|ADU67701.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 301

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 117/288 (40%), Gaps = 6/288 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +A  GS T AA +L LS  ++S+++S LE  +G++L  R  R L LT +G +
Sbjct: 13  DDLAFFVRIATLGSLTAAARELGLSLPAVSKRLSQLELRLGVQLLRRTTRRLELTPEGKR 72

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   +  +   +    G L I  +   G+  +   +  F  L+P + + 
Sbjct: 73  YLEGARPLLDQLAELEESVSSQTALLRGSLNINASFGFGRRHVAPLVSRFAALHPALSLS 132

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +     + D  IR+ +P   + L+ RKL T       AP Y   C  P S+  
Sbjct: 133 LQLSSQPLSFLDAHIDIDIRVGEP-PDARLMARKLRTNPRVLCCAPAYAARCGLPDSVTA 191

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +HN I               L    + + +     L  N     MQ    G GI L  
Sbjct: 192 LAQHNCILLRQYESDFALWR--LTDGSQQLTQKVRGTLVTNDGEVAMQLAQDGHGILLRS 249

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  +    +  L+ ++     P   ++  +    +   ++ AF  F+
Sbjct: 250 WWDAQHSIHSGELLHVLPAWSAPDGDIFAVWQPQRQLPARISAFVEFL 297


>gi|157377053|ref|YP_001475653.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319427|gb|ABV38525.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 298

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 16/298 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  +  +G F+  A+ L++  +++SR++  LE  +  +L  R  R L LTE+G
Sbjct: 8   ELQLIYLFVHLVNTGGFSQVAKALNMPIATVSRKVHKLEESLDTQLIMRSTRKLRLTEEG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +   +   + +           KP G LRIA  + +   +  G L EF  ++PDIQ
Sbjct: 68  EALFKRYQDAISQFDN---CSDSVINKPEGTLRIAAPVSIISMIFIGALNEFSKMHPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +  +N  ID+  +  D AI +      SS +   L  ++   YA+P YL    E    
Sbjct: 125 LHIAQNNNAIDLVEEGVDIAI-VGGAQPDSSWVSNSLGVLNYGLYASPSYLTQAAEIDHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L +H LI       K    FNW               + L +      +   V   GI
Sbjct: 184 NQLKQHALI-------KVWPLFNWTLKHRSGEDFYYDGPAKLTLGDLYGAVHAAVDDGGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              P+  VK    +  LV ++ +       +   Y +  +   K+K F  F+  KA++
Sbjct: 237 LYGPELFVKQQVKSGQLVEVLPEWTGEQRRISMLYHQRSQQPLKVKLFIEFMQSKAQE 294


>gi|15890991|ref|NP_356663.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15159311|gb|AAK89448.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 124/298 (41%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L++F + A   +F   A +L ++ + ++R I+ LE ++G++LF R  R ++LT
Sbjct: 1   MN-DHKALKIFLMAAEKRNFAQVARELSMTAAGVTRAIAALECDLGVQLFVRTTRQVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+            LE  + +++ +     G+LRI+    LG+ +L   L  F  LYP
Sbjct: 60  TDGAVFAAQIQPAVEALENARRDVRNAHKADEGRLRISAPTWLGKTVLPPILSGFRELYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +  ++ L +  ++I  D  D AIR+         I RK+  +     AAP       + 
Sbjct: 120 KMCFEISLSDGLVNIVDDDYDLAIRISSAPSDKFTIWRKIRAVPRILVAAPG--SRFTQM 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               +L   + + +     +     NW L+     I          N+   +      G+
Sbjct: 178 KHPSDLTPDDCLAYSGESRR----ENWILSDGGSSITITAGRAFSANNGEVLADMAADGA 233

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+A+LP + + ++     LV ++     P   +   YP       ++  F  F   + 
Sbjct: 234 GVAMLPGFHIAEHIRSGRLVHVLPGWAPPELWLTLYYPPYQTLPPRIATFSKFFEEQL 291


>gi|309781467|ref|ZP_07676203.1| regulatory protein [Ralstonia sp. 5_7_47FAA]
 gi|308919880|gb|EFP65541.1| regulatory protein [Ralstonia sp. 5_7_47FAA]
          Length = 305

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W+    F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE
Sbjct: 3   TMEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEAGLGVRLMTRTTRQLRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +   + ++ +L     +   +S   +G LRIA   ++G   L   +   L  YP 
Sbjct: 63  AGSHFYDDIAPLFERLREVHADTTAASETVAGTLRIAAPYEVGAQHLTEPVCRTLEKYPH 122

Query: 122 IQIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +QIQ+ +  +  D+     D   + + + +  SSL+ R++V I    YA+P  L      
Sbjct: 123 LQIQVHISWEQPDLLASGYDIVFVMVDQVLPDSSLVARRVVLIPRGLYASPTLLAERPPL 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L     ++  D            A    PI  P    LQ  +     +  V G G
Sbjct: 183 KTPADLAGWPCLSGPDDASWAFRPVGEPAV--EPIEVPIQPRLQTLNAEMRARAAVRGLG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A +   +         LVR++ D    +  VY   P       K++ F + +  +
Sbjct: 241 VARMARSVGDTEVAAGRLVRVLPDFELTALRVYALMPARKLVPRKVRVFLDALEAE 296


>gi|158422589|ref|YP_001523881.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158329478|dbj|BAF86963.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 262

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 117/267 (43%), Gaps = 11/267 (4%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
           + SR ++ LE E+G++L +R  R LTLT++G         +  +       +     K +
Sbjct: 2   AASRHLATLEQELGVRLVHRTTRALTLTDEGQVFLPHAQTLLEEKAAAIASICSPEDKAT 61

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G LR++ +    + ++   +  F+   P +++ +++ +  +D+  +  D AIR+ + +  
Sbjct: 62  GLLRLSCSAAFARRIINPVVAHFMEANPQVRVDVMISDTVVDVVAEGIDLAIRIAQ-LGD 120

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
           S+LI R+L        A+P YL     P ++ +L  H  +T  +            A+  
Sbjct: 121 STLIARRLADNPCLLIASPAYLARHGRPQTMADLKTHECLTTPNRSHWT------FASEG 174

Query: 213 RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI-MEDVITPSFT 268
           R +          +S  S+ Q C+ G GIA L  + V++   +  L  I + D    +  
Sbjct: 175 RSVRVKASGRYSSSSMESLHQACIAGLGIANLSLWNVREEIADGRLEAIHLSDGEPETLA 234

Query: 269 VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++  YP       K++ F   +  + R
Sbjct: 235 IWAVYPTRRLVPAKVRLFIEALSARLR 261


>gi|226945641|ref|YP_002800714.1| LysR family regulatory protein [Azotobacter vinelandii DJ]
 gi|226720568|gb|ACO79739.1| Regulatory protein, LysR family [Azotobacter vinelandii DJ]
          Length = 304

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 136/293 (46%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +  FT AAE L ++ S++S+ I  LET +G KL +R  R L LT +G   
Sbjct: 11  EMEVFIAVVAAEGFTAAAEPLGMTASAVSKLIHRLETRLGTKLLHRTTRKLQLTPEGGAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H     +   +   + E  ++   P G++RI + +  G + L   L EFL  YPD+Q+ +
Sbjct: 71  HERCLRILDDIGCAEHEAAQA-GSPRGRVRINSHVAFGVHYLLPRLPEFLGCYPDVQVDV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  D +D AIR   P+  S L QR++    +   A+P YL+    P   ++L
Sbjct: 130 TLSDIVVDLLDDRSDVAIRTG-PLPDSRLTQRRIGASGLVVVASPDYLRRANTPERPEDL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  + F     + ++ + ++      I       L++    S+ Q  + G G+A L  
Sbjct: 189 RQHRRLGFN--YARHVDAWPFIDGDGARIAIAPSGDLRLGDGESMRQMALAGVGVARLAR 246

Query: 247 YIV---KDNPNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFLKA 294
           Y V        L+ ++E+    +   ++  +         +++   +F+  + 
Sbjct: 247 YHVGADLAAGRLLALLENYDAGAVEDIHAVFVGPGRHVPARVRVLLDFLAERV 299


>gi|242240410|ref|YP_002988591.1| DNA-binding transcriptional activator GcvA [Dickeya dadantii
           Ech703]
 gi|242132467|gb|ACS86769.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703]
          Length = 308

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 122/293 (41%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++  L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSALNEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSEYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +++ +   D  D AI   +      L   KL   ++    +P  L       +  
Sbjct: 126 RIQAVDREEERLPDDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEHPLKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   +   +       +   +  +    ++Q  + G G+AL 
Sbjct: 185 DLAWHTLLHDASR----RDWLAYTRQLGISQSNVQQGPI-FSHSAMVLQAAIHGQGVALA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 240 NNVMAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 292


>gi|241203401|ref|YP_002974497.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857291|gb|ACS54958.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 297

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 122/295 (41%), Gaps = 7/295 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    L  F  VA   SFT AA  L  SQSS+S  +  LE  +G++L  R  R +  
Sbjct: 1   MKRDELGDLAAFLTVAEERSFTRAAALLGTSQSSLSHTVRRLEDRMGLRLLTRTTRTVVP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L       ++ + +    L      P G +RI +     + +L   +K  +  Y
Sbjct: 61  TEAGEQLAETLRPAFNDIRSRLDALGAMRHAPGGTIRITSIRHAAETILMPAVKGLMQSY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI I++ +D++ ID+  +  D  +RL + I+   +  +    + M   A+P Y     +
Sbjct: 121 PDINIEISVDSRLIDLVNERFDAGVRLGEHIEKDMIALKIGPEMRMLVVASPDYFARNPK 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H  I         +  +       +P+          N    I+   + G 
Sbjct: 181 PATPHDLTQHRCINLRLATVGGLYAWE-FEKDGKPLNVRVEGQFICNDVPMIVDAALGGF 239

Query: 240 GIALLPD----YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A LPD     ++++   LV ++ED   P    +  YP     +       N +
Sbjct: 240 GLACLPDDYLLPLIRE-GKLVPVLEDWSPPFPGYHLYYPSRRLASPAFSLLVNAL 293


>gi|156973492|ref|YP_001444399.1| DNA-binding transcriptional activator GcvA [Vibrio harveyi ATCC
           BAA-1116]
 gi|156525086|gb|ABU70172.1| hypothetical protein VIBHAR_01183 [Vibrio harveyi ATCC BAA-1116]
          Length = 306

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNSLRVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLSLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  +     ++ E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTSIAEATDKVLERSE--KGALTISLPPSFAIQWLVPRLADFNAQEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +   S+ 
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPSLLLGNKPLESLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+   A      G         +    ++Q    G G+AL 
Sbjct: 185 DLKLHTLLH-----DTSRKDWKQFARQQNIEGINVNHGPIFSHSTMVLQAAAHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + K   +   L+   ++V+      Y    E   + G++  FR+++   AR
Sbjct: 240 NNVLAKPEMEAGRLIAPFDEVLVSKNAFYVVCHEQQADMGRIATFRDWMLATAR 293


>gi|317049321|ref|YP_004116969.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950938|gb|ADU70413.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 305

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 123/293 (41%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F   YP I +
Sbjct: 68  SYYLDIKEIFSALNDATRKLQARSA--KGALTVSLLPSFAIQWLVPRLSSFNTAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D AI   +      L   KL   ++    +P  L       S  
Sbjct: 126 RIQAVDRDEEKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGDHPLKSPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          +  +++  +       +   +  +    ++Q  + G G+AL 
Sbjct: 185 DLAHFTLLHDASR----RDWQSYIRQLGLQHINVQQGPI-FSHSAMVLQAAIHGQGVALA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   LV    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 240 NNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|295676419|ref|YP_003604943.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436262|gb|ADG15432.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 304

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVILGRRIDALEKRLGVKLMYRTTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  + +  + EL       +G L ++     G+  +      FL   P+
Sbjct: 61  DGAAFLERCRGLLSEWDQAENELSAGRRAVNGHLIVSAPAAFGRKHVAPLAPAFLRDKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +   +P 
Sbjct: 121 LQMSFNLTDRVVDLVREGYDLSIRIGGTV-DPNFVAVKLASNRRVVCGTPEYFRRHGKPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           ++++L  HN + F     +  ++  W    +  +   R+   L  N    + ++   G G
Sbjct: 180 TLEDLPAHNCLAFNL---QGGQNRGWYFRRNGKLATVRVGGSLDCNDGELLHRWVSEGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + ++       L  ++++   P + +   YP+      +++ F +++
Sbjct: 237 LGWRSTWEIQQQLARGELETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|206558762|ref|YP_002229522.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198034799|emb|CAR50667.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 318

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 17/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F  V    SF+ AA +L ++ SS++R+I  LET++GI+L +R    L  TE G  L
Sbjct: 20  HLALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLL 79

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   + +  +L   Q +L     +P G LR+      G+  L   L  F+  YP +Q+ L
Sbjct: 80  YGRATRMLAELRGLQEDLHSQHDEPGGLLRVDCPAPFGRRHLMAALAAFMQRYPALQVDL 139

Query: 127 ILDNKDIDISMDY----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +L +  +D+         D A+R+  P++ +  +   L        A+  YL    EP S
Sbjct: 140 VLTDSMVDLQGARLGSDVDLAVRIG-PLEDTRFVATVLAPQRRVLCASAAYLARRGEPAS 198

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  H+ + +    P     F     V      P     + N   ++++  + G G+A
Sbjct: 199 PDALAGHDCLAWHGAPPPGAWRFGERRHV------PAQPRFRSNHSEALLEAAIDGLGLA 252

Query: 243 LLPDYIVKD---NPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  D   +  L  ++          T++    +A   + +      F+
Sbjct: 253 HLPTWLAADALRDGRLRALLPQYAAAPEPATIHVLRQQAR-GSARTSRLVAFL 304


>gi|159161967|ref|NP_396599.3| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141758|gb|AAK91040.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 320

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 134/296 (45%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  LR F ++  SGSF  AA  L ++ S++S  I  LE  +G KL  R  R + LTE G
Sbjct: 5   DFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+L R    +  + +T   +L E   KPSG L++       +  ++  L  F   Y DI 
Sbjct: 65  SRLARRLGPMMSEFDTLMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAYTDIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLS 182
           I L + +  +DI++   D A+   + IQ   L+  +L        YA+P YL     P  
Sbjct: 125 IDLTIGDVLVDIAVSGFDAAVIPNRSIQDD-LVSIRLGPELKRIVYASPRYLARFGAPSE 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  HN I F       +  + +    +R       S +  +S  ++    + G GI 
Sbjct: 184 PGDLVHHNCINFRGPHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTL-SAALSGKGIG 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + I K   D+ +L+ ++E  + P      CYP+    +  LKA  +++  ++R
Sbjct: 243 YGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSR 298


>gi|291613636|ref|YP_003523793.1| LysR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291583748|gb|ADE11406.1| transcriptional regulator, LysR family [Sideroxydans lithotrophicus
           ES-1]
          Length = 299

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 129/297 (43%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SF  AAE+LH++ +++S+QI  LE  +G+ LF R  + L L E   
Sbjct: 8   LNALRFFEAAARHRSFIRAAEELHVTPAAVSQQIKLLEDHLGVALFNR-GKTLVLNESAH 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               + S+ + +LE   + ++      +G L I+T        L   L +F L YPD+++
Sbjct: 67  DALHLVSDAFDQLERAMLRVRS--GSIAGPLTISTPPVFAARWLIPRLNDFYLRYPDVEV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI- 183
            L+   + +D SM+  D AIR         L   +L+   + A A P    + + P  + 
Sbjct: 125 HLLATRRIVDFSMEEVDMAIRFSSD-PHPGLSVERLMPEWIVAVATPELAASIKTPADLL 183

Query: 184 -QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L + +        P+       L  VD P+   R            +Q  V G G+ 
Sbjct: 184 HADLIEDDWHIMRGTFPEWKTWLAGLGVVDAPLNVRR-----FGDADLAIQAAVNGLGVT 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L    +V+++     LV+I+   I    +     P       K+ AFR ++F +A D
Sbjct: 239 LAWHSLVQNDLGSGRLVQILGHNIASDLSYQLVMPRNKSMLNKVAAFRAWLFEQAAD 295


>gi|330445863|ref|ZP_08309515.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490054|dbj|GAA04012.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 294

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 131/289 (45%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F V+   GS+T A+ +L ++ S++S+QI+ LE  + +KL  R  R L ++E G+++
Sbjct: 3   DLATFIVIVDEGSYTAASRKLGVTPSALSKQIARLEKTLSVKLLERTTRKLVISESGNRI 62

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   +++    +            PSG + IA        +LQ  +K FL  YP++ ++L
Sbjct: 63  YNQCTQMIDAAKEAIEISSSEHTIPSGTVTIAAPKAFMSIVLQPLVKPFLTQYPEVNLKL 122

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              + DIDI  D  D   RL +   S  L+ +K+   ++   A+P Y+     P   +EL
Sbjct: 123 KACDGDIDIIADGIDIVFRLTER-PSEGLVLKKIGKANLTLCASPEYIAKRGMPTHPREL 181

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +  G+     + DF+        I         VN     ++      GI L PD
Sbjct: 182 KQHDCLYLGETNTDHIWDFD---KDGEQITVAVTGRYAVNHSQMRLKGVKDNLGIGLFPD 238

Query: 247 YIVKDNP---NLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNF 289
           +++K +    N+V+++ D          +   Y +      +++A  +F
Sbjct: 239 FVIKHDLIAENVVQVLPDWTIRGNYHGDIALQYAQTKFMPARIRAVIDF 287


>gi|296115505|ref|ZP_06834137.1| hypothetical protein GXY_06960 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977946|gb|EFG84692.1| hypothetical protein GXY_06960 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 303

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 115/289 (39%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +++F  V   GSF  A++ L LS   +++ I  LE  +G +L +R  R  +LTE G 
Sbjct: 5   LTSMKIFIKVVELGSFAAASQHLTLSPQMVAKHIEALEHHLGARLLHRTTRRQSLTETGR 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   V    E        +   P G L ++  +  G+ +    +  F   YP+IQ+
Sbjct: 65  LYCEQCRLVLQAAERADSLAANTLGTPRGTLSVSVPVTFGRTVFLSFIHSFQKRYPEIQV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +  +MD  +  IR+ +     + + R L        AA  YL+    P   +
Sbjct: 125 HLSLTDQLVHPTMDGHEAVIRIGELETDLTAVSRPLTAYRRVICAAQTYLEKHGFPGQPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI--- 241
           +L +H  + + +             +V RP+       +  N    +    + G GI   
Sbjct: 185 DLMRHECLLYENSGGPVTTWHLSQGSVTRPVTV--SGRIISNDSSVLHSAALAGDGILLG 242

Query: 242 ---ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
              ALLPD     +  LVR+M     P   ++  Y      T KL+ F 
Sbjct: 243 YEQALLPDI---KSKRLVRLMPRWTVPDRPMHLLYNAGPVMTPKLRVFV 288


>gi|330818555|ref|YP_004362260.1| Transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327370948|gb|AEA62304.1| Transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 307

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  V    SF  AA QL +S ++++R +  LE  + ++L  R  R L+LTE G 
Sbjct: 4   LQAMRVFTRVVDLESFNLAARQLGMSAAAVTRSVGMLEAHLNMRLLNRTTRSLSLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  KL+  +  L  ++  P G LR+A ++      L   L  + L +P +  
Sbjct: 64  EYLDGCRTIIEKLDEIESNLVRATRDPRGTLRVAASMSFAAGGLGELLAAYRLQHPRVGF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +  ID+     D      + + S++L+ R L T+     A+P YL     P    
Sbjct: 124 DVTTFDTHIDMVEGGYDVCFSDDRRLVSATLVSRALTTVREVLVASPAYLARHGTPADPG 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L++H+L+T  D   +  E     A  D          L  +    +    +   GIALL
Sbjct: 184 ALNEHSLLTVSDGTARTWE----FADRDGVCRVYTGQALASSGSAMVRVAALSHMGIALL 239

Query: 245 PDYIVKDN---PNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P+ +V  +    +L+ +++          +   YP     + K+++F +F   + R
Sbjct: 240 PEPLVAGDLARGDLIALLDGHAANGGPRNISILYPGRNYLSMKVRSFIDFAVGRYR 295


>gi|89074784|ref|ZP_01161238.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89049359|gb|EAR54921.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 308

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 126/306 (41%), Gaps = 15/306 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR---HARGL 57
           +    + L+ F   AR  SF+ AAE+L+++ +++ + +  LE  +   LF+R       L
Sbjct: 3   LPIHLNALKAFEASARHQSFSAAAEELNVTPAAVGQLVRTLEEWLETPLFHRANSGKIRL 62

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             TE   +        + KL      LQ+S     G L +  +       L   L  F  
Sbjct: 63  LPTEIAERALPEIRAGFDKLSQGLELLQQSPT--CGILTVTVSPAFAAKWLLPRLDRFQA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           L P+  ++L  + K ID  +   D  +R         L+  KL+   +    +P  L   
Sbjct: 121 LCPETDVRLDTNLKPIDFVIQRVDIGVRYGTG-NWQGLVAEKLMEEEVFPVCSPQLLAQA 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISC--LQVNSYLSIMQY 234
              +  ++L    LI   DL       F  W A +D+       S   +Q+N+  +++Q 
Sbjct: 180 DSLIKPEQLLAQTLIH--DLSMDEHSGFPTWSAWLDKAGINQHQSSHNIQINNAAAVLQT 237

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G GIAL    +VKD+     LVR+  ++        +  Y     +  K++ FR+++
Sbjct: 238 AIDGGGIALARSVMVKDDLSAGRLVRLFPEIQFDSPLAYFVVYKPDSIDIAKVQVFRDWL 297

Query: 291 FLKARD 296
             + +D
Sbjct: 298 HQEVKD 303


>gi|161520359|ref|YP_001583786.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353464|ref|YP_001949091.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344409|gb|ABX17494.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337486|dbj|BAG46555.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 299

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 119/296 (40%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T+
Sbjct: 4   DLNWERYRTFLAVLTEGSLSAAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +       +           G +RI+ +  +   +L   L +    +P 
Sbjct: 64  AALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPLLAQLRREHPG 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L+  ++  D+    AD A+R+  P Q + L+ R++  + +  YA   YL     P 
Sbjct: 124 LVIELVPTDRIQDVLNREADIAVRMASPSQDA-LVARRIGELEVALYARDDYLARYGAPS 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++  L  H LI F  + P        L +  R         L+ +S L+ +     G GI
Sbjct: 183 TLDALAHHALIGFDTVTPFVRSAGRGLPSWTREAF-----ALRTDSNLAQLAMIRAGYGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 + + +  LVR++ D        +    E L+ + + +A  + +    R +
Sbjct: 238 GFCQSRLAQRDSRLVRVLPDGPAVKLETWVVMHEDLRASPRCRAVFDALANGLRAY 293


>gi|89053659|ref|YP_509110.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88863208|gb|ABD54085.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 297

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 122/289 (42%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR F  +   G+   A + L ++ S++S+Q+ G E  +G  LF R  R + LT+ G
Sbjct: 5   DLNGLRTFLAIVECGTLRAAGDDLGVNPSAVSQQLKGFEEALGSALFVRSTRSVALTDTG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+  T  +  +++      + ++   SG+LRI       Q  L   +  F   +P+I+
Sbjct: 65  QALYERTHHLMDEIDAALDATRHAARSTSGQLRITLPYRAWQLALAPRITAFQDHFPEIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L +D +  DI  +     IRL   +    +       +     A+  YL+    P   
Sbjct: 125 LDLSIDEELTDIVANGYHAGIRLGDYLADEMIAVALTKPLDGAFVASKEYLQRHGVPKRP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
            +L  H+ I +  +  K +   +W   +D       +S  L  +   S++     G GI 
Sbjct: 185 ADLLGHDCIRYRQIASKKVA--SWQFEIDGMETRIEVSGRLIFSDLRSVIDAAAQGLGIG 242

Query: 243 L-LPDYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             L + +    ++  L+ ++ D        Y  +P  L++   L+AF +
Sbjct: 243 WSLREGVAAQIESGELIEVLRDYTPHRPRFYLYFPRQLRDMTSLRAFID 291


>gi|89902257|ref|YP_524728.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89346994|gb|ABD71197.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 325

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 131/296 (44%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SFDW  +R F  V   GS   AA+ LH SQ ++ R I+ LE+++G+ LF R  RGL  T 
Sbjct: 34  SFDWSLVRSFLAVLDHGSLLGAAKVLHTSQPTLGRHIAELESQLGVVLFERTGRGLVPTA 93

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              KL      +    +     L  +  K +G +RI  +  +   +L   L +     PD
Sbjct: 94  TALKLADAARGMADGADRLARTLAGAQAKNTGTVRITASTPVAVQILPPILSQMRQALPD 153

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ++L+  N   ++    AD A+R+ +P +  +L+ +K+  + + A+A   YL       
Sbjct: 154 IQVELVASNTVSNLLRREADIAVRMVRP-EQGTLVAKKIGDVKLGAFANRAYLARRSPIR 212

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H LI             N    +  P  +  +   + + ++   Q    G GI
Sbjct: 213 QPMDLLGHTLIG----SDTDTAILNGFRAMGFPASKD-LFAFRTDDFIVQWQAVRAGLGI 267

Query: 242 ALLPDYIVKDNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             L  Y+ + + ++V+++ DV   P   ++      ++ +  +++  +F+     D
Sbjct: 268 GFLASYMARTDADVVQVLPDVLRIPPLPMWLAVHREIRTSKLIRSVYDFLAGALPD 323


>gi|331657383|ref|ZP_08358345.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA206]
 gi|331055631|gb|EGI27640.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA206]
          Length = 299

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 120/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  IRL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGIRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKGKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|325519261|gb|EGC98708.1| DNA-binding transcriptional activator GcvA [Burkholderia sp. TJI49]
          Length = 314

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 129/306 (42%), Gaps = 18/306 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      R F   +R  +F+ AA++L ++  ++S Q+  LE E+G++LF R+ + 
Sbjct: 1   MDLRQLPALNAIRAFEAASRHENFSRAADELFVTHGAVSHQVRALEEELGVQLFTRNGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           L LT+ G +  +        L     +++ S      +L I+         +   +  F+
Sbjct: 61  LCLTDAGMRYAQQVRTALMMLADATRQVRASDRDR--RLVISMLSSFAARFVTPRIGTFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P+I I+L   N   D + D  D AIR         L    L         AP  L  
Sbjct: 119 ERHPEIDIELQSTNSLTDFARDDVDLAIRFGFG-SYPGLYVEPLFEEVFFPACAPT-LNG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L  +NL+   D + +   D   L T    + EP+   L  +S   ++Q  +
Sbjct: 177 GKLPQTPADLVHYNLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSSN-LLQAAI 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIAL+   +         LVR+ +      +  YF  P  L +  +++AFR +I  +
Sbjct: 232 DGQGIALVRRSLALHEVLQGRLVRLFDIDGPSPWHYYFVCPTPLLSAPRVQAFRTWILQE 291

Query: 294 ARDWKF 299
              +K 
Sbjct: 292 VAAFKL 297


>gi|167915666|ref|ZP_02502757.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
          Length = 306

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 131/302 (43%), Gaps = 13/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++ +S  +  LE E+G+ L  R  R + LTE G
Sbjct: 3   SLDRFDVFRAVVEAGSFTGAANVLNQARAVVSFHVKQLEAELGVTLLTRTTRRVELTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++
Sbjct: 63  ERFYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL +  Q   L  R +   T  +   A+P  L       
Sbjct: 123 VRLETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVAR 182

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S + L +   +    L       + D +    V RP  +P    L  ++   +  +  
Sbjct: 183 IDSPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKP---YLIADNASVLRAFAQ 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+ALLP+++V+D+     L+  +         VY  YP A     K++A+ +FI   
Sbjct: 240 QGDGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVPQKIRAWIDFIKRY 299

Query: 294 AR 295
            R
Sbjct: 300 VR 301


>gi|258624253|ref|ZP_05719202.1| Transcriptional regulator, LysR family [Vibrio mimicus VM603]
 gi|258583404|gb|EEW08204.1| Transcriptional regulator, LysR family [Vibrio mimicus VM603]
          Length = 295

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 133/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSVKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  SGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQLI       +   + D  I R    + S S     L       YA+P YL+    P
Sbjct: 121 IRIQLITT-TPGQLPELHLDLFISREIDQLNSLSFKATPLFEHQAGFYASPSYLEKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++QEL +HN++ +G+   + ++         +             +  ++      G G
Sbjct: 180 KTLQELTQHNVLCWGEQTYREVKTA-------QGKRITLTGNFATTNPEALFYAGKAGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +    ++K+     NLVRI+ DV     TVY  YP+      + + F + +  K 
Sbjct: 233 VIVTGHIMIKEELKQGNLVRILPDVTIDQATVYAYYPKLEYQHTRTQLFLDHLKQKL 289


>gi|317048088|ref|YP_004115736.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949705|gb|ADU69180.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 297

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 116/292 (39%), Gaps = 5/292 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +   VAR GSF+ AA +L +S S+++  I+ LE  +G++LF R  R + LTE G + 
Sbjct: 8   ELEIMLAVARRGSFSGAASELEISPSAVTNAIAALEKRLGVRLFNRTTRSVGLTEAGRRF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +     + +   E+      P+G LR+    +         L  FL  YP I+ ++
Sbjct: 68  TLKIAPAVEVIRSASEEIASQPADPAGTLRLNVPPESCALWYDEILLPFLARYPRIRAEI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               + +DI     D  IRL   I +  +  +    + M   A+P YL  C  P   Q L
Sbjct: 128 HSQKEKVDIVAAGFDAGIRLADDIPADMIAVKLTPPLRMILVASPDYLSRCGTPEQPQAL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I               L+             L VN   S  +    G GIA + +
Sbjct: 188 HEHACICMRMADGSIYRWE--LSHQQHSYKVQVEPQLIVNDLASAQKAVTGGLGIACMSE 245

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             V  +     LV++M +       +   YP        LKA   F+  + R
Sbjct: 246 RHVAADVQAGRLVQLMSEWQVNLGELCLYYPGHRLVPPALKALTGFVRERLR 297


>gi|289667709|ref|ZP_06488784.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 321

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 66/282 (23%), Positives = 124/282 (43%), Gaps = 8/282 (2%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
             G F  A   L + +S +SR+IS LET++G++L  R  R   +T+ G+ +HR    +  
Sbjct: 3   DHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVGTSVHRHAQTMLA 62

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
           + +  +  +   S +P G +R++  + L Q  L   L +FL  YP +++QL + N+ +D+
Sbjct: 63  EAQAAREVVDRLSAEPRGLVRVSVPVSLAQIQLPKLLPQFLAKYPKVRLQLNISNRRVDV 122

Query: 136 SMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH-NLIT 193
             +  D A+R+R  +    SL+ R    +     A+P YL     P    EL  H  + T
Sbjct: 123 INEGYDIALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRTGRPKDPSELANHTTMST 182

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD-- 251
             D   +  E       + R   +PR++      +  +      G GI +LP+ +  +  
Sbjct: 183 SEDEAHQRWELHGPNGEMRRVDLQPRLAGF---DFPLLQSMARDGFGITMLPETVCAEAV 239

Query: 252 -NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +  L  ++     P    +  +         ++ F +F+  
Sbjct: 240 RSGELEVVLPHWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 281


>gi|296448062|ref|ZP_06889965.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
 gi|296254419|gb|EFH01543.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
          Length = 299

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 117/297 (39%), Gaps = 8/297 (2%)

Query: 3   FDWDK-LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F      GS T AA  L +SQ ++S+ +  LE  VG KL  R AR L  T 
Sbjct: 1   MDLAAALRAFVRSVERGSMTAAAADLGVSQPAVSKLLRNLEGHVGAKLVERGARALRPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  L+         ++     L+       G+LR+     +G+  L     +F   +P 
Sbjct: 61  QGLALYEAAGGALAVIDAAIEGLRSDGGAIEGRLRLHGPACIGERDLHALAAQFQDRHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L LDN+ +D+  +  D A+R+ +P     L+ R++        A+P YL       
Sbjct: 121 VDVELSLDNRPVDLIHENFDLALRMERP-TDQRLVMRRIGYSRRILVASPDYLARRGPVA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  EL   +LI     +         L      I  P    L  N+   ++     G G+
Sbjct: 180 SCVELAGRDLIVTDASLRAGAL---LLRRGKEKIALPVRPKLTTNNARVLLDALTAGRGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                 +V  +     L+R++ D        +  YP        ++AF +F+    R
Sbjct: 237 GTTQLLLVAQDLAAGRLLRVLPDWEIEPTEFFLVYPSTRYLRPTVRAFVDFVAPALR 293


>gi|170692289|ref|ZP_02883452.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142719|gb|EDT10884.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 304

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 126/295 (42%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVILGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  + +  + EL       +G L ++     G+  +      F+   P+
Sbjct: 61  DGAAFLERCRGLLTEWDQAENELSAGRRAVNGHLIVSAPAAFGRKHVAPLAPAFVADKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +   +P 
Sbjct: 121 LQVSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPEYFRQHGKPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++++L +HN + F     +  ++  W    +  +   R+   L  N    + ++   G G
Sbjct: 180 TLEDLPRHNCLAFNL---QGGQNRGWYFRRNGKLVTVRVGGTLDCNDGELLHRWVSEGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     + ++       L  ++++   P + +   YP+      K++ F +++  
Sbjct: 237 LGWRSTWEIQQQLARGELETVLDEFALPDYDILAVYPQQRYVPAKVRYFIDYLKE 291


>gi|254373222|ref|ZP_04988711.1| hypothetical protein FTCG_00805 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570949|gb|EDN36603.1| hypothetical protein FTCG_00805 [Francisella novicida GA99-3549]
          Length = 298

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 137/290 (47%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LET+    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKAIGISPPVVSKQIQILETKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 64  LLYEKASLILNELEATEEKIFAEDILIDSELKISAPNSFGIKYLCNIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+ +     A+  YLKN   P +I+
Sbjct: 124 NINLSDSYINIIDEDFDLVIRIGA-LDDSNLITKKLMPMPSLLCASEQYLKNYGIPKTIK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  I + +       +   L +V++         +  N+   ++Q C+ G GIA L
Sbjct: 183 DLENHLFIQYNN---HSSSNRIILESVNKTEIINVRQRIVTNNAEMMLQGCLDGLGIAKL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           P + + D   +  LV ++ D   P    +Y           K++    +I
Sbjct: 240 PLFEIIDKIHDKKLVHLLPDARNPIEKNLYLISSRDKYRLKKVRLLSAYI 289


>gi|241666657|ref|YP_002984741.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862114|gb|ACS59779.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 317

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 137/301 (45%), Gaps = 10/301 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT 
Sbjct: 6   QFTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTA 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +  + E  + +L + S+   G +R++             L +F   +P 
Sbjct: 66  MGTRFVETAERMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLPQFAAQHPH 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+   + + +S   AD ++ L +P +  +    KL   H+  Y +  YL    +  
Sbjct: 126 LSLELVTIQQIMSLSRKEADLSVVLDEP-KGGAYFAEKLTDYHLQVYGSREYLAKAPDIN 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S ++L  H  +++ + +       ++L  V      PRI    Q +S  + +     G G
Sbjct: 185 SREDLLSHPFVSYIEEMIFA-PGLDYLGDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--DWK 298
           + +LP +     P LVR++ D I      +      LK   +++A  +F+    R  D +
Sbjct: 239 LCILPYFFASRYPELVRVLPDEIDLKRHYWITCHRDLKQAPRVRAVIDFLREAVRGEDAR 298

Query: 299 F 299
           F
Sbjct: 299 F 299


>gi|162146669|ref|YP_001601128.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209543338|ref|YP_002275567.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785244|emb|CAP54790.1| putative transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531015|gb|ACI50952.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 308

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 134/293 (45%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +   +F  V  +GSF   AE+L +S+ ++S+ IS LE  +G  L +R +R  +LTE G
Sbjct: 6   DLEAWAIFAKVVETGSFARTAEELQISKPTVSKAISRLEHRLGSPLLHRTSRQFSLTETG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + +    E  + E +E +V P G +R+   +  G   L   L +F+  YPDI 
Sbjct: 66  RGALERATRILTDGEMAEAEAREQTVHPRGLIRMTAPMTFGIAHLAPVLPDFMASYPDID 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +   ++ +D+     D A+R+   +  SSL  R+L T+ +   A+P  L    +P   
Sbjct: 126 ITIGFSDQIVDLVGGGYDLAVRIAS-LSDSSLRARRLCTVRLLMVASPGLLARVGQPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L++     + ++        +     +  I +P    L  N+  +   + + G GIAL
Sbjct: 185 RDLEQIPGFVYTNVATPGQIRLHHAQAGEYTIVQP--GRLHANNAEAFRPFLLAGLGIAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP++++ D+     LV ++ +       ++   P       ++     ++  +
Sbjct: 243 LPEFMIWDDLAAGRLVNVLPEWQVTPVAIHLVTPPGQTRPARVSVLLEYLASR 295


>gi|170692175|ref|ZP_02883338.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142605|gb|EDT10770.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 309

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 121/296 (40%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D+  LR+F  + R  SF   A +L  + S++S  +  LE  +G KL  R +R ++ TE
Sbjct: 6   RIDFADLRLFLAIVRCRSFRLTAIELGQTPSAVSHAMRRLEDRLGAKLLNRTSRAVSPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L     + ++++ +     +       G LR+    D    L+   L EF  L PD
Sbjct: 66  AGLDLASRLEDGFNQIGSALESFEAPGTARLGSLRLNVFADAAHLLVAPALPEFARLCPD 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ +++DN+ IDI  +  D  IR    +    +             A+P YLK    P 
Sbjct: 126 VQLTVVVDNRPIDIVAEGYDAGIRYGHHVPEDMIAVPLTGPQQWVMAASPAYLKKHGTPR 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            + EL  HN +    L+      + W  +V       R+   + +N   + +  C  G G
Sbjct: 186 HVSELADHNCL---QLLLGDNSSYRWEVSVAGKKTPIRVPGSITINDTATTISACKAGMG 242

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA L +  + D      L  ++ED       ++  Y     N   L +  N I  +
Sbjct: 243 IAYLLEARIADELARRTLRVVLEDHACAEDPLHMYYSGRRYNHPALLSLINIIRKQ 298


>gi|221201038|ref|ZP_03574078.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206510|ref|ZP_03579523.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221173819|gb|EEE06253.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221178888|gb|EEE11295.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 327

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 124/291 (42%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE  +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEHQSFRRAAHHLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTEAGVRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  + +++ +P G LR+  +  L    L   L  F   YP++++Q+ 
Sbjct: 67  DGCRALLEEFDHLEASVAQATHEPGGTLRVVASGLLSPGALTPLLGRFRHRYPELRVQMT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  I        + +LI + L      A A+P YL+   EP + ++L
Sbjct: 127 IAEAPLDVLDAGYDVGIVTGDRFDGNPALIAQALAPNPFVACASPAYLERHGEPRTPEDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +       +    +  +    R           VN    +    V GSGIA+LP+
Sbjct: 187 PRHDWVALAP--HQHPGAWRLVGPDARVHTVTVRPACTVNQLALVHAAAVAGSGIAMLPE 244

Query: 247 YIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + V    D+  LVR++       P   +   YP       + ++F      
Sbjct: 245 HCVADAIDSGTLVRLLPGYRIDDPHTQLSLVYPNRQFVPARTRSFVEHAVE 295


>gi|27379064|ref|NP_770593.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27352214|dbj|BAC49218.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 302

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 138/290 (47%), Gaps = 8/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DWD  R    + R GS + AA+QL +  +++ R++  LE  +  KLF R   G  LTE
Sbjct: 6   AIDWDDFRFVLAIVRGGSVSAAAKQLGVDHATVIRRVDRLEKHLSAKLFDRRKTGYLLTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++      +   +   Q ++  S  + +G +RI      G   L   L  F   YPD
Sbjct: 66  AGQRVADSAEAMESTIVANQEQVGGSVARLTGTVRIGAPDGFGTAFLAPRLAPFADRYPD 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +QL+   +   +S   AD AI L  P +   ++ RKL+   +  YAAP YL      +
Sbjct: 126 LDLQLVATARLFSLSKREADIAISLTMP-KEGRIVGRKLLDYRLGLYAAPAYLDRFPTIV 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S + L +H  + + + +    E  ++L     P   PRIS   +  + ++ +   + G G
Sbjct: 185 SREVLPQHRFVGYIEELLFTPE-LDYL-----PQVSPRISARFRSANLIAQLNATLSGFG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA+LP ++  D P LV ++ + I+ + T +       K+  +++A  ++I
Sbjct: 239 IAVLPHFMASDYPQLVAVLPEEISITRTFWMLMHADSKDLARIRAVADYI 288


>gi|238894404|ref|YP_002919138.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546720|dbj|BAH63071.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 304

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 122/293 (41%), Gaps = 11/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L +F  +   GSF+ AA  L  S+   +  I  LE  +G +L  R  R +  T 
Sbjct: 1   MDKLDTLTLFVRIVERGSFSAAAADLGFSRPVATAAIKALEASLGARLLQRTTRHVQPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS  ++    +   LE      + +    SG +R+    +L + LL   L +FL  YP 
Sbjct: 61  EGSLYYQRCVSILAALEEA---NRSAGGSISGTIRVDVAGNLARTLLLPALPQFLARYPA 117

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +Q+    +D+D+  +  DC IR    +  S +I R L  +     A+P YL     P 
Sbjct: 118 ITLQIGESERDVDLVREGVDCVIR-GGHLPDSEMICRPLARLQEITCASPAYLARYGTPH 176

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           +I  L  H  I F  +  +         T+D    E  + C L  +      +   LG G
Sbjct: 177 TIDGLAGHVAIGF--VSARTHRTLPLTFTLDGRQTEVSLPCRLLTSDADVGAEASRLGFG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   P   ++ +     L  ++ D       +   YP + + + +++ F +++
Sbjct: 235 LYQAPLSRLEADLASGVLTEVLADFRPAPLPLSLLYPSSRQLSARVQVFIDWV 287


>gi|206562447|ref|YP_002233210.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038487|emb|CAR54445.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 299

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 122/300 (40%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+G F  AA    LS S +S  +  LE  +G++L +R  R +  T
Sbjct: 1   MQTDLGDLNAFMAVARAGGFRDAARMTGLSASGLSEAVRRLEARLGVRLLHRTTRSVVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L         ++      + E   +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGERLLARLGPALTEVAAALDGIDEFRGRPAGTLKLNVPVSASRLVLPAIVPRFLDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI++++  D   +D+     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 DIRLEVTADENFVDVLAAGCDAGIRYDERLEQD-MIAVPIGPRVQRFATAAAPGYLDRHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYC 235
            P   ++L  H  +  G      M  + +    +    EP    L V    +   ++   
Sbjct: 180 RPRHPRDLLDHRCLR-GRFASGAMPPWEFERDGEVVRVEPAAGPLLVQIGGATELMVDAA 238

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G+GI  L +  ++   D+  L  ++E    P    +  YP        L+AF +FI  
Sbjct: 239 IAGTGIVHLFEDWLRPHVDSGALEPVLEPWWRPFSGPFLYYPGRRLVPPALRAFIDFIKA 298


>gi|152982683|ref|YP_001354316.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151282760|gb|ABR91170.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 299

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 132/290 (45%), Gaps = 10/290 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D+L +F  +  SGS   A+ +L  S  +I+R +  LE  +G +L  R  R L  TE
Sbjct: 1   MDRLDELEIFIAILDSGSLVAASRKLRRSPPAITRALGTLEERIGTRLIERTTRHLVATE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L +    +    E T  E  ++S    G L++   +  G+  +   +  +L  YP+
Sbjct: 61  AGLHLAQQARRLLADYEQTVQE--DASAPLRGTLKVTAPVVFGRRHVAPIVNSYLDQYPE 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++LI +++++D+  +  D  +R+   +  +S++ R++  +     A+P Y++   EP 
Sbjct: 119 MRVELITNDRNLDLIEEGIDVGVRIGS-LADTSMVARRVGQVQSVLVASPDYIERRGEPK 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI ++  H++I F  +  K  E         R         L VN   +++     G G+
Sbjct: 178 SIADIAHHDVI-FTAIREKAPEWR--FRHNGREQIVALTPRLIVNEIDAVLLAAKAGRGL 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           A +  Y V D      L+R++  +  P   V    P A     K +AF +
Sbjct: 235 ARVLSYQVADELQAGTLLRVLPKLDAPDLPVQLIVPSARLMAPKSRAFLD 284


>gi|13472013|ref|NP_103580.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022758|dbj|BAB49366.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 301

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 123/297 (41%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L+ F  VAR+G F  AA   ++S SS+S  +  LET +G++L  R  R +  T
Sbjct: 1   MAADLGDLQAFVAVARAGGFREAARVGNVSASSLSETVRRLETGLGVRLLNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L         ++E     +     +P+G LR+   +   + +L   L  FL  YP
Sbjct: 61  EAGARLLERLGPALDEVEAALDVVNGFRGRPAGTLRLNVPVVAAKLVLPRLLPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH--AYAAPHYLKNCR 178
           DI++++  ++  +DI     D  IR  + ++   +I   +     H    AAP YL    
Sbjct: 121 DIRVEVTAEDSFVDILASGCDAGIRYEERLEQD-MIAVPIGPRRQHYATAAAPAYLDRHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CV 236
            P   ++L  H  +  G         + +    +    EP    L        +     V
Sbjct: 180 RPEHPRDLLHHACLR-GRFASGLTPPWEFERDGEVVSVEPTGPLLVSTGTAMALALEVAV 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  L +  ++   D+  L  ++E         +  YP        L+AF +F+
Sbjct: 239 AGGGIVSLFEDWLRPYFDDGRLEPVLEPWWQEFSGPFLYYPGRRLTPAPLRAFIDFV 295


>gi|167573428|ref|ZP_02366302.1| LysR-family transcriptional regulator [Burkholderia oklahomensis
           C6786]
          Length = 306

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 132/302 (43%), Gaps = 13/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G
Sbjct: 3   SLDRFDVFRAVVEAGSFTGAANVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++    V  + E    E +       G LR+ +T++    ++   L+EF   +P ++
Sbjct: 63  ERFYKRCLRVLAEAEEAIDEARGEHGGMRGSLRVTSTVEYALKVVAPALREFTSQHPALR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL   +  Q        L T  +    +P  L       
Sbjct: 123 VRLETHTSQADLVRDRFDVAIRLGRFEQFQDLPYRGVCLDTYDVRPVVSPALLAERGVVR 182

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S   L +   +    L       + D      V RP  +P+   +  ++   +  +  
Sbjct: 183 IESPDALARLPQLGHSRLSQVASWLLRDREGREHVFRPAAKPQ---MVADNASVLRAFAQ 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GSG+ALLP+++V+D+     L+  + D   P  +VY  YP       K++A+ +F+   
Sbjct: 240 QGSGVALLPEWLVRDDLDNGTLIDALPDYRFPPQSVYALYPSTRHVPQKIRAWIDFMKRY 299

Query: 294 AR 295
            R
Sbjct: 300 VR 301


>gi|16119552|ref|NP_396258.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15162106|gb|AAK90699.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 300

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 132/287 (45%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS+T AA  L +S S+IS+ I  LE  +G+ LF R  R LTLT +G 
Sbjct: 10  LTGLIAFARAGSLGSYTAAARSLSVSPSAISKSIQRLEAHLGVSLFTRTTRSLTLTAEGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +H     +    E  +   + +  +P+G LRIAT++ +G +++   L +F  L+P +  
Sbjct: 70  DIHGRALRLLRDAEAIEQAAKTARAEPTGMLRIATSMAIGLHVIAPALAKFRKLHPKVAF 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D+  +  D A+R+   +  S L+ R+L    +  YA+P YL     P    
Sbjct: 130 DLRLSDHRVDLVEEGIDLAVRIGD-LPDSRLLSRRLSPHRLCCYASPDYLAMHGTPKHPD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L+ H  +          + F W   + DR +     S + V++  ++M       GI +
Sbjct: 189 DLEAHETVNL--RYQSTGQVFRWPFRIGDRDVEIVPSSGIIVDASEAVMATIATDGGIGM 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
              ++ +   +   LV ++ D       +   +PE+ ++   ++AF 
Sbjct: 247 AASFMARPWVNRGELVPVLSDFAVERNNITAVWPESRRSNPAVRAFL 293


>gi|78061372|ref|YP_371280.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969257|gb|ABB10636.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 297

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 125/295 (42%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++  L  F  VAR  SFT AA QL +SQS++S  I  LET +G++L  R  R +  TE G
Sbjct: 5   NFADLLAFIAVARERSFTRAAAQLGVSQSALSHTIRSLETRLGVRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  + ++E     L E   +P+G +RI  T  + + LL   L   L  Y D++
Sbjct: 65  ERLLLNLAPRFDEIEAELTALAELRDQPAGTVRINATDFVIRTLLWPKLAPVLRDYRDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D    DI  +  D  +RL   +    +  R    + M    AP Y      P+S 
Sbjct: 125 VEFVNDYGLSDIVAERFDVGVRLGDQVAKDMIAVRISADMKMAIVGAPAYFAERARPVSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P     + W         + R+   +  N     +   + G G+A
Sbjct: 185 QDLVAHDCINL--RLPTHGALYAWELARGDDTLQVRVDGQVTFNGTYETLDAALAGYGLA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +P  +   +     L  +++D        +  Y    +++  L    + +  +A
Sbjct: 243 YVPAELAAPHVAAGRLDSVLDDWCPTFPGHHLYYASRRQSSRALAVIVDALRYRA 297


>gi|330809953|ref|YP_004354415.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378061|gb|AEA69411.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 302

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 129/294 (43%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A   L + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLGARLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R    +  + E     +   S +P G+LR+++ + L    L   ++ FL+ YP +Q
Sbjct: 63  ERYLRHCQAMLLEAEMADEAVASMSSEPRGRLRVSSPVGLAHQFLPVVIETFLVKYPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + + L N+ +D+  +  D A+R+R    +   L+ R+L    +   A+P +++  R   +
Sbjct: 123 LDMTLLNRRVDLIGEGIDVALRVRDLGDEDPLLMTRRLRQARLMMVASPAFVEGRR-IET 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +  ++  G L          ++   + +     + L ++ ++      + G G  
Sbjct: 182 PDDLKQLPVL--GALEADRQVHLRLVSADGQRVELGLEARLGIDDFIVRRACTLAGLGFT 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP    +    +  LV ++    +P   +   YP        ++A+ + +   
Sbjct: 240 LLPSMYCEQELQDGTLVELLPGWSSPDGWLQAVYPHRRGMLPAVRAWIDHLVEA 293


>gi|269104878|ref|ZP_06157574.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161518|gb|EEZ40015.1| transcriptional regulator LysR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 295

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 131/292 (44%), Gaps = 9/292 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F      GSF   AE+  +S   + + I GLE+ +G KL  +  R   LT 
Sbjct: 1   MDRLSSIEIFVRAVELGSFAVVAEERGISAQMVGKHIRGLESSLGTKLLAKSTRYQALTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + H     +  ++   Q ++  +  +P GKL++   ++LG +L+   L +F+  YP 
Sbjct: 61  AGEQFHLRCLNILSEMNAAQEDIYRNINEPIGKLKLCCGVNLGISLIAPLLGQFIQQYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+LILDN   DI  D  D  I   +      L+  ++ +  M A A+P YL     P 
Sbjct: 121 LEIELILDNNPPDIQRDGFDV-IFHDRVEGYEFLVGHQICSYDMVACASPEYLHKYGIPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             +EL+ H  +            F      D     PRI S   +NS  +++     G+G
Sbjct: 180 HPKELEHHQCLKHSTTYHAHRWCF---KGPDGEYFLPRISSRFMINSGQAMLAAAKEGAG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           I + P + V+++    +L  I+     P   ++  Y  +L+NT +L    +F
Sbjct: 237 ITIQPRFQVQNDLNSGSLTHILPSYTLPEIELFMLYKPSLRNTSRLILLNDF 288


>gi|254477434|ref|ZP_05090820.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214031677|gb|EEB72512.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 326

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 129/293 (44%), Gaps = 13/293 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W  +R F +VA  GSFT AA   ++S+++IS+ +S LE  + ++L  R  R L LTE
Sbjct: 3   NVSWRGIRAFLLVAEHGSFTAAARASNMSKANISQLVSELEEALSVQLLVRTTRSLRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLG-QNLLQGNLKEFLLLYP 120
            G        +  ++L+       +S+    G +R+ +   L  ++L+   +  F   +P
Sbjct: 63  VGEGYADQCRKAMNQLDAAADWASQSTRTLKGAIRMNSVGGLIGEDLVAPLIMSFQQAHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L   +  +D+     D  +R+ + +  SSLI R L TI     A+P ++      
Sbjct: 123 DVTVRLDFSSARVDLVDGPYDIVLRMGE-LPDSSLIARGLRTIRTRYVASPAFVAARGPI 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L    LI +G +    M       T+    G      L++ S   + +  + G G
Sbjct: 182 NTPSDLVDLPLI-YGSVDHWQMSRNGEEQTIQARRG------LRIASGRVMRRAAIEGHG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A + D     +     LV ++ D    +  +    P       ++++  +++
Sbjct: 235 VARIGDVYCDADIKAGRLVEVLPDWAEET-PLSLVCPPMRHQLARVRSLMDWL 286


>gi|187923773|ref|YP_001895415.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714967|gb|ACD16191.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 304

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 125/295 (42%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVILGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  + +  + EL       +G L ++     G+  +      FL   P+
Sbjct: 61  DGAAFLERCRGLLTEWDQAENELSAGRRAVNGHLIVSAPAAFGRKHVAPLAPVFLADKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 LQVSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPEYFRQHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++++L +HN + F     +  ++  W    +  +   R+   L  N    + ++   G G
Sbjct: 180 TLEDLPQHNCLAFNL---QGGQNRGWYFRRNGKLATVRVGGTLDCNDGELLHRWVSEGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     + ++       L  ++++   P + +   YP+      K++ F +++  
Sbjct: 237 LGWRSTWEIQQQLARGELETVLDEFALPDYDILAVYPQQRYVPAKVRYFIDYLKE 291


>gi|56413996|ref|YP_151071.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362919|ref|YP_002142556.1| hypothetical protein SSPA1718 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56128253|gb|AAV77759.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094396|emb|CAR59911.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 303

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 123/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 5   DLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  +    V+P G +++   + L    +   L +F+  YPD+ 
Sbjct: 65  QTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R +P + S L+ R L       +A+P  +     P +
Sbjct: 125 LQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPDLIARMGIPSA 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     ++      K +  +         +       +     L++ +  + G G+ 
Sbjct: 185 PAELSHWPGLSLAS--GKHIHRWELYGPQGARVEVHFTPRMITTDMLALREAAMAGVGLV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +VK+      LV ++E+       ++  +P        ++A  +F+  +
Sbjct: 243 QLPVLMVKEQLAAGELVAVLEEWEPRREVIHAVFPSRRGLLPSVRALVDFLTEE 296


>gi|83593550|ref|YP_427302.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576464|gb|ABC23015.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 317

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 115/293 (39%), Gaps = 9/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR G FT AA +LH++ +++S Q+ GLE  +G+ LF+R A+GL LT  G 
Sbjct: 8   LNALRAFEAAARHGGFTGAARELHVTPAAVSHQVKGLEDALGVSLFHRLAKGLELTAAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +  + +L   +   +       G+L ++         L   L  FL  YPDI +
Sbjct: 68  AYLPELTAGFDQL--ARASERLKRGALVGRLTVSVLPSFAAGWLAPRLASFLRRYPDILL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L    + +D   +  D  IR    I    L   +++   +    AP  L          
Sbjct: 126 DLRSTPRTVDFIRERVDLGIRYGGGI-YPGLASYRILEEEVFPICAPALLNGPVPLRGFA 184

Query: 185 ELDKHNLITFGDLIPK--CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H L+    ++P         WLA       +         S  +++  CV G G+ 
Sbjct: 185 DLRHHVLLHDPGILPGEPWTGWEPWLAEAGVTDIDLEAGHGFTESI-AMIHACVAGLGVG 243

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +    +V +   +  LVR         F+ +   P   +   K  AF  ++  
Sbjct: 244 IGRSGLVTELLRSGRLVRPFPVSRPADFSYWVVVPPPSQTNPKAAAFIGWLLE 296


>gi|220921727|ref|YP_002497028.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219946333|gb|ACL56725.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 298

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 114/290 (39%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VAR  SF  AA +L +S S++S  +  LE  +G++L  R  R +  TE G
Sbjct: 5   DLPDLVAFASVARHRSFRRAAAELGVSPSALSHSVRDLEARIGVRLLNRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    +    +++    ++  S  + +G LR+       + +L   +  FL L+P ++
Sbjct: 65  AALLARLAPALGEIDRAVSDVAASGGRLTGTLRLNAPRSACRLVLAPLVARFLALHPGVR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  D+   DI     D  +R  + +    +             AAP YL     P + 
Sbjct: 125 VEIACDDALADIVGQGFDAGVRFGERVPRDMIAVPLGGPQRFAVVAAPAYLAARGAPDTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  +         +  + +               L +N    ++Q  + G G+A 
Sbjct: 185 EDLAGHACLR-QRFPGGAVMRWEFEREGRACCAIDVDGPLTLNEQELLLQAAIDGVGLAF 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +        +  LVR++E            +P   +    L+AF   +
Sbjct: 244 VFEGYAASALADGRLVRLLEPWCPSFPGFVLYHPSRRQPPAPLRAFLALL 293


>gi|115376597|ref|ZP_01463828.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366402|gb|EAU65406.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 319

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 130/298 (43%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  D + + +   V R+ SF+ AA +  +  S++SR+I+ LE+ +GI+L  R  R L LT
Sbjct: 5   IHLDLNDVALLVRVVRTQSFSAAARERGVPVSTVSRRIARLESVLGIRLLERTTRRLRLT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +           L      ++E   +P G++RI   I LG   +   +  +L  +P
Sbjct: 65  DAGREYFGHAERAVDDLAQGTDRVRELQKEPRGRVRIMAPIVLGAA-VSNVIYTYLARHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCRE 179
            + + L L+ + +D+  +  D AI   K + S+  + R+L        YA+P YL+    
Sbjct: 124 GVSVDLELNERRVDLLAEGFDIAILTGK-VDSTDFVARELWRATRKLLYASPRYLEARGA 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  +++L +H+ I                    R   EPR     V+ + +  +  + G 
Sbjct: 183 PRRVEDLARHDCIATRAADGIATWTLAQGRRKQRFAFEPR---FYVSEFSAAHRAVLAGV 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIA+LP+    ++     LVR+++     S  V   Y      T  ++   +    + 
Sbjct: 240 GIAMLPEVHCAEDVAEKRLVRVLDGYEGESGGVSLLYRAHRSLTAAVRTCIDHFLAEL 297


>gi|312797478|ref|YP_004030400.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312169253|emb|CBW76256.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 348

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  V  + SF  AAE++HLS +  S+ +  LE  +G +L  R  R ++LTE G   +
Sbjct: 11  MKVFRHVVEASSFAAAAERMHLSPAMASKHVMHLEAHLGARLLNRTTRRISLTEAGRDYY 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +LE  +  + E+SV P G LRI      G   L   + E+  L+P +Q+ + 
Sbjct: 71  ERCVQALTELEEAEQAVSEASVVPKGTLRINALSTFGNRYLMPAIAEYTRLHPGVQVNIT 130

Query: 128 LDNKDIDISMDYADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  + +D+  +  D AIR      +++SSLI R++   +    A+P YL+    P   ++
Sbjct: 131 MSERVVDLVEEGYDLAIRGSHSAKLRTSSLIARQIARAYFVICASPDYLRRHGVPQVPED 190

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN +          E    L   +   G      +  N   ++    + G+GIA L 
Sbjct: 191 LRAHNCLRLAAHGAHTREWP--LGNAENGGGVTTRGNIVANDIEALRAAAIAGAGIAYLG 248

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              V D+     LV ++ + + P    ++  YP     + K+++F +FI  +
Sbjct: 249 TDCVYDDLENGTLVPLLLEHVGPRELPIFAVYPSRRHLSAKVRSFVDFIAER 300


>gi|187922116|ref|YP_001893758.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713310|gb|ACD14534.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 306

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 120/286 (41%), Gaps = 8/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V R G F+ AA  L L+ S ++ +++GLE  +G+ L  R  R  +LTE G   
Sbjct: 6   EMEIFVEVVRQGGFSAAARSLSLASSVVADRVAGLEKRLGVPLLLRTTRRQSLTEAGEDY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  S + + + T +  + ES+    G L +     LG   +   +  F   YPD+  QL
Sbjct: 66  FQEASRIINDVRTLESRIVESATAVRGTLHVTAPNPLGLRWIAPFVGRFAASYPDMATQL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD+   DI     D AIR   P   ++LI   L        A+P YL +   P    EL
Sbjct: 126 TLDDHFADIVAQGIDIAIR-GGPAIDANLIGHHLFDTRRVVVASPAYLDDHGTPRHPDEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI-MQYCVLGSGIALLP 245
             H  + F        E   W         + R++    ++  ++ + + V G G+    
Sbjct: 185 AAHRCLVFNTQSHLHAE---WRFGRGPAARKLRVTGSLASTNSALPVAWAVAGLGLVQKS 241

Query: 246 DYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            + V ++     LV +++       + Y  +P +   + K+  F  
Sbjct: 242 WWEVSEHLAARRLVTVLDAFEPEPASFYAIHPVSRNKSRKVALFVE 287


>gi|171317594|ref|ZP_02906781.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097222|gb|EDT42070.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 299

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 123/297 (41%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 3   IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 63  EAALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPMLAQLRRDHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P Q + L+ R++  I +  +A   YL     P
Sbjct: 123 GLVIELVPTDRIQDVLNREADIAVRMAPPAQDA-LVARRVGEIDVGLHARDDYLARNGTP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H LI F  + P     F   A    P+       L+ +S L+ +     G G
Sbjct: 182 STTGELAHHALIGFDTVTP-----FIRSAGRGMPLWNRDAFALRTDSNLAQLAMIRAGYG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I    + + K +  LVR++ D  T     +    E L+ + + +A  + +    R +
Sbjct: 237 IGFCQNGLAKRDARLVRVLPDGPTMKLETWVVMHEDLRTSPRCRAVFDALANGLRAY 293


>gi|83646624|ref|YP_435059.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634667|gb|ABC30634.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 299

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 126/296 (42%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   L VF     +GSF  AA  L LS S +S  ISGLET +G+ L YR  R L+LT
Sbjct: 1   MIDELRALAVFAKTVEAGSFRAAASALSLSPSVVSHHISGLETRLGVALLYRSTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +    E     + E + +P+GKL I     L +     ++  F L +P
Sbjct: 61  SEGERLFDHAKTMLAAAEAGLNAIIEQAAEPTGKLTITAPAVLARGPFTADVAAFALAFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + +   +   D+  D  D AIR+ + +  SSL  +KL  +     AAP YLKN   P
Sbjct: 121 KISLFINYSDIRQDLIRDGIDLAIRIGE-MADSSLKSKKLFDLTRRLVAAPGYLKNRPTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +   I    + P      +      R    PRI    V+S  ++ Q    G G
Sbjct: 180 NHPADLLQWEWIGL-KMRPNYKLLHSASGERQRIDFTPRI---TVDSIDAVCQLAAAGLG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A  P ++V+D+     L   +      +  VY  +P           F  F+  +
Sbjct: 236 LATPPAFLVEDDLRNGRLCEPLPAWRVDTLGVYAVWPPNAARESLTYRFIQFLQSR 291


>gi|313202357|ref|YP_004041015.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441673|gb|ADQ85779.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 315

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 122/297 (41%), Gaps = 5/297 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F   A+ GS + AA  L +S +  S  +  LE+E+G+ LF R  R L LT +G
Sbjct: 11  NLADLELFITTAQYGSLSAAARSLEISPAVASAALKRLESELGVLLFVRTTRSLRLTAEG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L   +  + ++L     EL        G+L ++   DLG+N++   L EF   +PD+ 
Sbjct: 71  ERLLARSQPLINELRDLADELVAGHSLIRGELSLSLPSDLGRNVILPWLDEFQQQHPDLH 130

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ L ++  D+  +  D AIR  +P  SS +    +        AAP YL     P S 
Sbjct: 131 LRVQLSDRIADVMREPVDVAIRYGQPPDSSQVALPLVTDNRRVLCAAPQYLTTHSTPSSP 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +HN + F   +   + +          +          +   ++  + V G GI  
Sbjct: 191 AELSRHNCLCF--RVGDALYNRWRFTRDGEVLDIDVRGNRSADDADAVRHWTVSGYGICY 248

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                V  +     L  I       S  +    P+  + +  ++  R  +  +   +
Sbjct: 249 RSWLDVGRDVTAGRLSVICPQWQGESLPLNLICPDRRQLSPTIRLLREHLQHRFETY 305


>gi|254705630|ref|ZP_05167458.1| hypothetical protein BpinM_01101 [Brucella pinnipedialis
           M163/99/10]
 gi|254710859|ref|ZP_05172670.1| hypothetical protein BpinB_11471 [Brucella pinnipedialis B2/94]
 gi|254712668|ref|ZP_05174479.1| hypothetical protein BcetM6_04706 [Brucella ceti M644/93/1]
 gi|254715738|ref|ZP_05177549.1| hypothetical protein BcetM_04714 [Brucella ceti M13/05/1]
 gi|256029242|ref|ZP_05442856.1| hypothetical protein BpinM2_01030 [Brucella pinnipedialis
           M292/94/1]
 gi|256157437|ref|ZP_05455355.1| hypothetical protein BcetM4_01066 [Brucella ceti M490/95/1]
 gi|256253585|ref|ZP_05459121.1| hypothetical protein BcetB_04674 [Brucella ceti B1/94]
 gi|260167666|ref|ZP_05754477.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99]
 gi|261220721|ref|ZP_05935002.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261313040|ref|ZP_05952237.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261318433|ref|ZP_05957630.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|265986232|ref|ZP_06098789.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265995928|ref|ZP_06108485.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|260919305|gb|EEX85958.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261297656|gb|EEY01153.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261302066|gb|EEY05563.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|262550225|gb|EEZ06386.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|264658429|gb|EEZ28690.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
          Length = 310

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 126/294 (42%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    S+   S    IAT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAMASAQSTS-SFSIATLPTFGTRWLMPRIPDFVEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   +   D      D AI   +P+ +       L +  +   A+P  LK  R P S 
Sbjct: 129 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHD-TCTFLCSEVIVPVASPSLLKTRR-PASP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+   L+    L  +      W  +     G+      +   +  ++   + G G AL
Sbjct: 187 EELENEPLLH---LATRPKMWAQWFESCGVE-GQSAYRGHRFEQFSMVIGAALAGLGFAL 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++    +  LV + E  +      Y   PE        + F  +I  + 
Sbjct: 243 LPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEGKLENPLTQVFCQWIAGQV 296


>gi|229590273|ref|YP_002872392.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
 gi|229362139|emb|CAY49041.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
          Length = 302

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 133/291 (45%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A   L + +S +SR+I+ LE  +G +L  R  R LTLT  G
Sbjct: 3   DLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLGARLLQRTTRQLTLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R    +  + E     +   S +P G+LR++  + + Q++L   +  FL  +P +Q
Sbjct: 63  ERYLRHCQAMLLEAEMADEAVASMSSEPRGRLRVSCPVGMAQHILPEIVAGFLAAHPQVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ L N+ +D+  +  D A+R+R+   +   L+ ++L        A+P  L   R+  S
Sbjct: 123 LEMTLVNRRVDLVAEGIDVALRVRELGDEDPLLVTKRLRQAQTVLVASPA-LMLGRQVAS 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L +  ++  G L    +     +            + L ++ ++      ++G G  
Sbjct: 182 LEDLKQLPIL--GALEADRLVHQRIIDPQGHAHELAMEARLGIDDFIVRKTSAIMGLGFT 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP    +    +  LV+++ +   P   +   YP        ++A+ +++
Sbjct: 240 ILPMMYCEAELASGQLVQLLPEWSLPGGWLQAVYPHRRGVLPAIRAWIDYL 290


>gi|52426189|ref|YP_089326.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308241|gb|AAU38741.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 295

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 134/288 (46%), Gaps = 7/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D +R+F  V +SGS +HA E   +  S +SR+++ LE  +G +L  R  +G++L E 
Sbjct: 11  ISLDDMRLFVSVVQSGSLSHAGELTGIPVSRLSRRLTQLEQALGTQLLNRGKKGVSLNEL 70

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +    + ++  + E     +Q+S   PSG LRI+   D+    +Q  L  +L   P +
Sbjct: 71  GERFFEHSQQMLQQAELAIESVQKSLENPSGLLRISVAADIFYLFIQPYLATYLNENPQV 130

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++ L N+ I++  D  D AIR    I + +++ R    +    +A+  YL    EP S
Sbjct: 131 NLEINLSNQKINMIQDGVDLAIRTG-VIDNENVVARLWKKMEFGVFASQAYLAKYSEPQS 189

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H++I+    +P   +  N      + +     S L  N +  + Q     SGI 
Sbjct: 190 PNDLYQHHIISQMYTLPWRFQQGN------QEVAVFPHSRLTCNDFAIVEQQLKQHSGIG 243

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP     +  +L+RI+ D    S  V   Y         +++F  F+
Sbjct: 244 ILPITKNHNRSDLIRILADWQLQSVPVSLIYYRNRGAIATVRSFVEFL 291


>gi|293602963|ref|ZP_06685402.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553]
 gi|292818757|gb|EFF77799.1| contact-regulated protein A [Achromobacter piechaudii ATCC 43553]
          Length = 300

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 132/296 (44%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+++VF  V  SGS T AA+ L  + S+ SR +S LE ++   L  R  R L LT
Sbjct: 1   MKTTLDEMQVFIAVVDSGSITAAADVLGQTISATSRTMSRLEEKLQTTLMRRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E T+  +     +P+G LR+        +++   +  +   YP
Sbjct: 61  EEGRAYLEQVRRIVAAVEETEDLMNVRRNQPAGLLRVDAASPFMLHVIAPLVPGYRKRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +  +ID+     D AIR+ + ++ SSL    L    +   A+P YL     P
Sbjct: 121 QVELELNSNEGNIDLLERRTDLAIRIGR-LKDSSLHAVPLGHSRVRVLASPAYLAQHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L +H L+ F  L  + + ++  L    + +       ++ +S  ++ Q  +   G
Sbjct: 180 KRVADLARHTLLGFSQL--ESLNEWPLLDADGQALHVK--PGVRAHSGETLRQLALNDGG 235

Query: 241 IALLPDYIV---KDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L D++    + +  L +++          +   Y      + ++K+F +++  
Sbjct: 236 IVCLSDFMTRGDRRSGTLQQVLVRQTQDVKQPINAVYYRNTAISSRIKSFIDYLVE 291


>gi|239813854|ref|YP_002942764.1| MarR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800431|gb|ACS17498.1| transcriptional regulator, MarR family [Variovorax paradoxus S110]
          Length = 310

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 141/300 (47%), Gaps = 9/300 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  +G+ + AA +L +S++++S  ++ LE  VG +L  R  R    TE 
Sbjct: 1   MDLQSLTLLVEILDAGNLSAAARRLKMSRANVSYHLNQLERSVGAQLVRRTTRRAEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++    +  +L   +  +        G++R++     GQ ++ G L +F   YP I
Sbjct: 61  GLRLYQHGVAIQAELLAAKESVTTLGQGLQGRVRLSVPSGYGQLVMAGWLIDFKRQYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D AIR+  P    +L+ R++  +   A A+  Y +    P+ 
Sbjct: 121 VLDVVFENRIEDLLRDEVDIAIRVI-PEPPQNLVAREMGPVRYVACASSGYAQKHPLPVQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSG 240
           + EL    ++T   +I + +    +       +    I    L   ++L + Q  + G G
Sbjct: 180 LDELQGAPVVT-AAVIGRQLRVSAYQGQNLGEVRREVILEPTLISENFLFLRQAILAGLG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I L+PDY+V+++    ++V  ++D     F   ++  Y    ++T  ++ F +FI  + R
Sbjct: 239 IGLVPDYVVQEDVRKGDVVTTLDDWRLSIFGTQMFMLYMPNRQHTRAIRTFIDFILERVR 298


>gi|153011306|ref|YP_001372520.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151563194|gb|ABS16691.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 305

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 120/294 (40%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   + L +S +SR+I+ LE  +G++L  R +R  ++T+ G
Sbjct: 3   DLNDLYYFVQVVDHGGFAQAGRAIGLQKSKLSRRIAILEERLGVRLIQRSSRHFSVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +R    V  + E     + +   +P G +R++    L          +FL  YP + 
Sbjct: 63  REYYRRCLAVLVEAEAATAFIAQHRDEPQGVVRLSCPTALISFQFGALFAKFLTAYPKVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D+  +  D +IR+R  P++ + L+ RKL     +  A P +L       +
Sbjct: 123 LHLESTNRRVDVIGERFDVSIRVRFPPLEQTDLLMRKLDDSSQYLVARPGFLNE--PVTT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     + +         ++            P       +   ++    + G+GI 
Sbjct: 181 PADLVGLPSLAWTSASHNY--EWRLEKHNGERAVIPHRPRFLTDDMAALRDAALDGAGIV 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  ++  +     LV ++ +    +  V+  +P        ++   +F+  +
Sbjct: 239 QLPTMMIWRDLAAGTLVPVLPEWRPAAGIVHAVFPSRRGLLPSVRTLIDFLARE 292


>gi|109897994|ref|YP_661249.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109700275|gb|ABG40195.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 302

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 141/303 (46%), Gaps = 13/303 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +GSFT+AA   ++  SS+SR+++ LE  +G  L  R  R + LTE
Sbjct: 1   MDQLRAIRYFCKVVETGSFTNAATTFNVPPSSLSRRVADLERSLGATLLKRSTRVVRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +   +++  +LE +   ++     P+G+LRI+  ++ G+ +L   L+EF   YP 
Sbjct: 61  IGRTYYNQVNDILRQLELSNDTVRSYQTVPTGQLRISAMVEFGEPILFPLLEEFSQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + L ++   +S D  D AIR      +  +I  KL+     A A   YL+    P 
Sbjct: 121 IILDVRLSDELSALSRDEVDIAIR-GGYAPNERVIAIKLMENQFIAVATKAYLERYGTPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + +       +   + +    + +  P+++    N+   ++   + G G+
Sbjct: 180 TPLDLSHHKGLYYR-TPNGPLRWISEINGQWQDVSAPQVAV--SNNGKWLLGKVLAGQGM 236

Query: 242 ALLPDYIVKD---NPNLVRI-MEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + P +++K+   + +L  + +   I    +  F +Y  Y +      K+KA  +F+  +
Sbjct: 237 MMAPKWLLKEYLVSGDLQELSLSPEINITSSSDFGIYLLYQKQRYLVPKVKAAVDFLVAR 296

Query: 294 ARD 296
            + 
Sbjct: 297 IKQ 299


>gi|325168286|ref|YP_004280076.1| transcriptional regulator LysR [Agrobacterium sp. H13-3]
 gi|325064009|gb|ADY67698.1| putative transcriptional regulator LysR [Agrobacterium sp. H13-3]
          Length = 294

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 123/290 (42%), Gaps = 5/290 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D  +L  F  VAR  +F  A E+  ++ S+IS  +  LE  VGI+L  R  R ++LT+
Sbjct: 3   STDLSELAAFDAVARHRNFRRAGEERGVTASAISHAVGNLEARVGIRLLNRTTRSVSLTD 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L    S  + ++ +    L +    P GK+RI     +   + +  +   +   P 
Sbjct: 63  AGAMLLAQLSPAFGEIGSALDALNQFRDTPFGKVRINAPNSVAPFVFRSVIGPLIAENPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++++  ++ +DI  +  D  IRL + ++      +    +      +  Y +    P 
Sbjct: 123 LQLEIVATDRLVDIVEEGFDAGIRLGESLRDGMTAVKIKPRLRFAVVGSTSYFERYPLPK 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I   ++ P         +   + I       L ++ +  +++  + G G+
Sbjct: 183 TPDDLRGHVCI--RNIYPSGKPYPWEFSRAGKIIEFEPTGSLSLDDHELMVEAALSGVGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           A + +   +   +N +LV  +     P   +Y  YP     +  L+A  +
Sbjct: 241 AYVWEERARAYIENGSLVECLASWSAPEDWLYLYYPTRKYLSAGLRAVID 290


>gi|149917385|ref|ZP_01905883.1| regulatory protein, LysR:LysR, substrate-binding [Plesiocystis
           pacifica SIR-1]
 gi|149821722|gb|EDM81118.1| regulatory protein, LysR:LysR, substrate-binding [Plesiocystis
           pacifica SIR-1]
          Length = 303

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 124/297 (41%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G FT A   L + +S +SR +  LE  +G++L  R +R   +TE G
Sbjct: 5   DLNDYFYFVHVVEQGGFTAAGRALGVPKSRLSRHVQQLEARLGVRLLQRTSRQFVVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    V  +++  + E++  +   SG++R++ ++ + Q  L   L  FL   P + 
Sbjct: 65  QVFLRHARAVLDEVDAAEAEIKRQTNSLSGQVRLSCSVGMAQFALGEILARFLADNPKVD 124

Query: 124 IQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +   + N+ +D+     D A+R    P+  SS +QR++     + +A+P YL++   P S
Sbjct: 125 VIQNVTNQPLDLVEARIDIALRGHAGPLPDSSFVQRRVARTPWYLFASPGYLEDAGVPDS 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H            +  ++           P    L  +   ++ +  + G G+ 
Sbjct: 185 PDDLQHHA--GMKVGWKPELGQWSLRGPGGARATIPFRPRLCSDDMGTLERAAIEGLGVV 242

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP Y+ ++     +L R++   +     +    P        ++A    +  +  +
Sbjct: 243 ALPGYVCREALRAGHLTRVLPGWLAADAQLSMLMPSRRGLLPAVEALAAHLRAELPE 299


>gi|332368487|gb|AEE61319.1| LysR-type regulator [Serratia plymuthica RVH1]
          Length = 319

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 125/285 (43%), Gaps = 11/285 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VA  GSF+ AA +L +  SS+ R I  LE+ +   LF R  RGL LT+ G  
Sbjct: 27  EHLPIFLEVALQGSFSAAARKLGMVPSSLVRHIDALESALDATLFIRSTRGLMLTDAGEM 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +   +   + EL   S  P G LRI+     G+  +   L      YP + + 
Sbjct: 87  LKARAAALLSDITDIRAELASLSDVPQGTLRISCLPTFGKTYILPLLPTLAERYPQLFVD 146

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D + +  D AIR+ +  + S L   ++ T      A+P Y+     P  +  
Sbjct: 147 LDLTERQTDPTQELLDAAIRIGEQ-KDSGLYASRIATQRWVMCASPDYIARYGCPGDLNA 205

Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H LI  +    P C     W   +   +       L+ N + +  Q  +LG GI  L
Sbjct: 206 LPEHRLIARYNKQQPAC-----WTQILSGQLLNRCSMVLRCNDFTAQRQAALLGLGITFL 260

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P+++V  +     L +++ED       +Y   P A   + +L AF
Sbjct: 261 PNWVVGPDIQAGRLHQVLEDPRQEQQGIYLLRPVAK-ISARLSAF 304


>gi|319791570|ref|YP_004153210.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594033|gb|ADU35099.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 306

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 137/298 (45%), Gaps = 9/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  +G+ + AA +L +S++++S  ++ LE  VG +L  R  R    TE 
Sbjct: 1   MDLQSLTLLVEILDAGNLSAAARRLKMSRANVSYHLNQLERSVGAQLVRRTTRRAEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++    +  +L   +  +        G++R++     GQ ++   L +F   YP I
Sbjct: 61  GLRLYQHGVAIQTELLAARESVTTLGEGLQGRVRLSVPSGYGQLVMADWLIDFKRQYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+  P    +L+ R L  +   A A+  Y +    P+ 
Sbjct: 121 VLDVVFENRIEDLLRDEVDIAVRVI-PEPPQNLVARDLGPVRYVACASRDYAEKHPLPVQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL    ++T   +  +         T    I EP    L   ++L + Q  + G GI 
Sbjct: 180 LDELQGAPVVTAAVIGRQLRVSAYQGETRREVILEP---TLISENFLFLRQAILAGLGIG 236

Query: 243 LLPDYIVKDNPNLVRI---MEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+PDY+V+++     +   ++D     F   ++  Y    ++T  ++ F +FI  +AR
Sbjct: 237 LVPDYVVQEDVRKGEVLTTLDDWRLSIFGTQMFMLYMPNRQHTRAIRTFIDFILERAR 294


>gi|264679741|ref|YP_003279650.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210256|gb|ACY34354.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 314

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 137/302 (45%), Gaps = 15/302 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V    SF  AA QL L+ S++SR +  LET  G++L +R  R L+LTE G+++
Sbjct: 10  EMLVFAKVVELRSFAAAARQLDLTTSAVSRSVGRLETHWGVQLLHRTTRSLSLTELGAEV 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   S++              S  P G +R+      G+  L   L      +P++++ +
Sbjct: 70  YAACSQLAQTASDIHAIAGHYSGVPRGTVRLTAPTIFGEIWLSAQLPALRRQWPELEVAV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNC-REPLSIQ 184
            L ++  D++    D AIRL +P Q    ++ R+L  +   A A+P YL+   + P   Q
Sbjct: 130 SLSDQMQDLAQQGLDLAIRLTRPEQLPPHMVARELRQVRYIAVASPAYLRGLIKPPEHPQ 189

Query: 185 ELDKHN---LIT--FGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           EL + +    IT  +GD   +         + +  + E  + S L ++S   I+   +  
Sbjct: 190 ELGREHGVACITLGYGDFQSRLQWVHGQTRSPEAAVTEVAVHSPLSMDSSTGIINLALQH 249

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITP----SFTVYFCYPEALKNTGKLKAFRNFIF 291
            GI L+ D+  +    +  LV+++ D +        T Y  Y  +     K++A  + + 
Sbjct: 250 QGIGLVADFAAQAVLSSGALVQVLPDWLLTGNYAPRTAYALYMPSRHLPLKVRALIDHLV 309

Query: 292 LK 293
             
Sbjct: 310 EA 311


>gi|226952797|ref|ZP_03823261.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226836418|gb|EEH68801.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 301

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 11/296 (3%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           ++ D    ++VF  +A  G+ + AA+ L+ S++ +SR +  LE     +LF R+ R ++L
Sbjct: 3   INMDTLKAIQVFVCIAHQGNLSKAAQHLNYSKAMVSRYLEHLEATFSTRLFQRNTRKVSL 62

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G K       +  + +  +     +  + SG +R    + L Q  +   +K+F   Y
Sbjct: 63  TPAGEKALLYCENILQQQQLLE--GLAAPEQHSGTIRFTCGLFLFQLGVNECIKQFKKRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I   + L    ID+     D A+R+ + + +  LI R +  I     A PHYL++   
Sbjct: 121 PHIHFDVYLTENTIDLMDAQVDLALRITQKV-AEGLIARPVCQIESIFCAHPHYLQDHTP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                +L +H+ I          + +    T  +P   P     + N  +++ Q C+   
Sbjct: 180 LSHPSQLIQHDCIAHH----THNQYWTLFDTDQQPQNYPLNVTFKSNDVIALYQMCLKAE 235

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA+LP  +V+ +     L ++  D   P  T+   Y          + F  F+  
Sbjct: 236 GIAMLPTLLVRQDIAQQRLQQVFTDFSAPDLTLSLVYASRQHLPKITQEFIAFVIE 291


>gi|182677612|ref|YP_001831758.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633495|gb|ACB94269.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 301

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 131/289 (45%), Gaps = 6/289 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FDW+ LR F  VAR+G  T AA  L +  +++SR+I+GLE  + +KLF RH  G  LT 
Sbjct: 3   DFDWNSLRSFLAVARTGRLTTAARTLGVDHTTLSRRIAGLEEALKVKLFERHPSGYRLTN 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +     TTQ ++    +  +G +RI      G N L   +      +P 
Sbjct: 63  AGDRLLLSAETMESIALTTQSQIGGEDLAVTGAVRIGAPEGFGSNFLASRIAALCHQHPQ 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++IQL+   +   +S   AD AI L  P +   L+ RKL    +  YAAP YL       
Sbjct: 123 LEIQLVAMPRLFSLSKREADIAISLAPP-REGRLVARKLTDYRLRLYAAPAYLATLPPIK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI++L     I + D +    E           I       L+  + ++ +   + G+GI
Sbjct: 182 SIEDLRDCRFIGYIDDLIYSQE-----LDYLGEIASFLSPQLKSANLIAQLNAAITGTGI 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPD+I +    LV ++   ++   + +      L+   ++K    FI
Sbjct: 237 CVLPDFIARGCEGLVPVLPSQVSLMRSFWLVTHADLRGLARIKTVSAFI 285


>gi|13473045|ref|NP_104612.1| transcriptional regulator, GstR [Mesorhizobium loti MAFF303099]
 gi|14023793|dbj|BAB50398.1| transcriptional regulator; GstR [Mesorhizobium loti MAFF303099]
          Length = 300

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 127/298 (42%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +F     +GS + AA +  +  +++SR++S LE  +  +L  R  R LT T+
Sbjct: 1   MDRLEAMSLFVAAVEAGSLSAAARRFGIPLATVSRKVSDLERHLNTRLLNRSTRRLTPTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   +   +         P+G+L I   +  G+  +   +  FL  YPD
Sbjct: 61  AGEAYLAACRRILDDVGEAERAAAGEYSAPTGELAITAPVVFGRLHVLPVVTGFLSAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L ++   +  D+ D A+R+ + +  SSL+   + +I     A+P YL       
Sbjct: 121 VDIRLTLADRITQLVEDHFDLALRIGQ-LPDSSLVAIGVGSIRRVVCASPAYLAEHGTLT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H+ ITF  L       F    T    I     S LQVN+  + +   + G G+
Sbjct: 180 IPEDLGTHDCITFEGLSSAAPWSFTRGKT---DITVQVRSRLQVNTAEAAIDAAIAGVGL 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +  Y V     +  L  ++++     + V   +        KL+AF +F   + ++
Sbjct: 237 TKVLSYQVDAAVRSGMLRIVLQEFEPEPWPVSLVHAGHGLLPVKLRAFLDFAAPRLKE 294


>gi|209694280|ref|YP_002262208.1| DNA-binding transcriptional activator GcvA [Aliivibrio salmonicida
           LFI1238]
 gi|208008231|emb|CAQ78376.1| glycine cleavage system transcriptional activator [Aliivibrio
           salmonicida LFI1238]
          Length = 302

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 121/294 (41%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLRVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++  L     ++ E S    G L I+         L   L +F    PDI +
Sbjct: 68  GYFLDIKEIFSSLSEATDKVLERSA--KGALTISLPPSFAIQWLVPRLSDFNQKEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     +  D AI   +      L    L    +    +P  L N +   +I 
Sbjct: 126 RIKAVDMDEGSLTEDVDVAIYYGRG-NWPGLRVELLYQEQLLPLCSPQVLLNEKPLATID 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+          G         +    ++Q    G GIAL 
Sbjct: 185 DLRFHTLLH-----DTSRKDWKLFVKQFELQGMNVNQGPIFSHSTMVLQAAAHGQGIALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + +   D   LV   E+++      Y    E   +TG++  FR ++  KAR
Sbjct: 240 NNVLAQPELDAGRLVAPFEELLISKNAFYLVCNEKQADTGRIATFREWVLSKAR 293


>gi|269964004|ref|ZP_06178310.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831223|gb|EEZ85376.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 312

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 125/296 (42%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L+V   VA   S T AA  L +  ++ S  +  +E  +G +LF R  R L L+  
Sbjct: 1   MLLEDLQVVLKVAEFRSITGAATALDMRTATASAAVKRVEASLGAELFVRTTRHLRLSSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    LE  +  ++E      G++RIA + DLG+NL+   L EF+  YP +
Sbjct: 61  GERYLPQCEKALELLEHAKQNMREDLDIIDGEVRIALSSDLGRNLVTPWLDEFMDSYPQV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++  + + ++D   D  D A+R   P   SS+   K+  +     A P YL     P  
Sbjct: 121 TLRSNISDSNVDFYRDSVDMALRYGAP-TDSSMYGFKICNVPRLLCATPEYLAEHGTPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L +HN + +   +   ++D    +  D             N    + ++CV G G+A
Sbjct: 180 PQDLIEHNGLLY--QLHDTLQDVWGFSDGDSEHKVKLKGNRASNDGDLVRRWCVSGKGLA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +     +  +    N+V +M +       ++   P     T  ++  R+    K +
Sbjct: 238 IKSCLDMSQDLLKGNVVNVMSEYKPTPTELWLICPSRQSITPTVRLLRDLFREKTK 293


>gi|207722251|ref|YP_002252687.1| hypothetical protein RSMK04834 [Ralstonia solanacearum MolK2]
 gi|206587428|emb|CAQ18010.1| hypothetical protein RSMK04834 [Ralstonia solanacearum MolK2]
          Length = 304

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 125/299 (41%), Gaps = 13/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH---ARGLTLTE 61
            + LR F    R  SF+ AA +L+++ +++ + +  LE  +G  LF+R       L  TE
Sbjct: 7   LNALRAFEASTRHQSFSAAAAELNVTPAAVGQLVRSLEASLGTPLFHRSSGGRARLVATE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + +L      L+E+S   SG L +  +       L   +  F   +PD
Sbjct: 67  AAERALPDIRAGFDRLSLGLARLKEASA--SGVLTVTVSPAFAAKWLLPRIDRFQAAWPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L  + K +D      D  +R     +   L+  KL+   ++   +P  L+  R   
Sbjct: 125 TDVRLDTNLKPVDFIAQGVDIGVRYGAG-RWPGLVAEKLMGEEVYPVCSPGLLRQKRRLR 183

Query: 182 SIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  +L K  LI     D     +    WL  V       +   +++N+  +++Q  + G 
Sbjct: 184 NPADLAKETLIHDLSVDGHDGFVSWDVWLERVGVTTVATQRG-MRINNSAAVLQAAIDGH 242

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL    + +D+     LVR+  ++  T +   Y  Y        KL AFR+++  +A
Sbjct: 243 GVALARSVMARDDLAAGRLVRLFPEIEFTSALAYYVVYRAECAGLPKLAAFRDWLVSEA 301


>gi|300690632|ref|YP_003751627.1| HTH-type transcriptional activator aaeR [Ralstonia solanacearum
           PSI07]
 gi|299077692|emb|CBJ50328.1| putative HTH-type transcriptional activator aaeR [Ralstonia
           solanacearum PSI07]
          Length = 305

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 125/295 (42%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+   +F  V  +GSFT AAE L + +S+ S  +S LE  +G++L  R  R L LTE 
Sbjct: 1   MEWNDWEIFCRVVEAGSFTAAAEVLGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P++
Sbjct: 61  GSHFYDDIAPLFERLREVHADTAAASETVSGTLRIAAPYEVGAQHLTEPVCQTLARFPNL 120

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+ +  +  D+     D   + + + +  SSL+ R++V I    YAAP  L       
Sbjct: 121 QIQVHISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVLIPRGLYAAPSLLAERAPLA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     ++  D                 P   P    LQ  +    ++  V G G+
Sbjct: 181 MPADLAGWPCLSGPDDASWVFRPAG--EPTAEPFEVPIQPRLQTLNAEMRVRAAVRGLGV 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A +   +         LVR++ D       VY   P       K++ F + +  +
Sbjct: 239 ARMARLVGDAEVATGRLVRVLPDYEPTPLRVYALMPARKLVPRKVRVFLDALEAQ 293


>gi|134293973|ref|YP_001117709.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137130|gb|ABO58244.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 299

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 122/296 (41%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  TE
Sbjct: 4   DLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +       +           G +RI+ +  +   +L   L +    +P 
Sbjct: 64  AAVALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPMLAQLHRDHPG 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L+  ++  D+    AD A+R+  P Q + L+ R++  I +  +A   YL     P 
Sbjct: 124 LVIELVSTDRIQDVLNREADIAVRMAPPAQDA-LVARRIGAIEVALHARDDYLARNGTPS 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL +H LI F  + P     F   A    P  +     L+ +S L+ +     G GI
Sbjct: 183 TVDELARHALIGFDTVTP-----FIRAAGRAMPQWKRDAFALRTDSNLAQLAMIRAGYGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 + + +  LVR++ D    +   +    E L+ + + +   + +    R +
Sbjct: 238 GFCQSALARRDARLVRVLPDTPALALETWVVMHEDLRTSPRCRVVFDALANGLRGY 293


>gi|258622187|ref|ZP_05717213.1| Transcriptional regulator, LysR family [Vibrio mimicus VM573]
 gi|258585511|gb|EEW10234.1| Transcriptional regulator, LysR family [Vibrio mimicus VM573]
          Length = 295

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 133/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSVKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQLI       +   + D  I R    + S S     L       YA+P YL+    P
Sbjct: 121 IRIQLITT-TPGQLPELHLDLFISREIDQLNSLSFKATPLFEHQAGFYASPSYLEKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++QEL +HN++ +G+   + ++         +             +  ++      G G
Sbjct: 180 KTLQELTQHNVLCWGEQTYREVKTA-------QGKRITLTGNFATTNPEALFYAGKAGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +    ++K+     NLVRI+ DV     TVY  YP+      + + F + +  K 
Sbjct: 233 VIVTGHIMIKEELKQGNLVRILPDVTIDQATVYAYYPKLEYQHTRTQLFLDHLKHKL 289


>gi|229526285|ref|ZP_04415689.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229336443|gb|EEO01461.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
          Length = 295

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I++QLI       +   + D  I R  + + S S     L       YA+P YL     P
Sbjct: 121 IRVQLITT-TPGQLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++QEL +HN++ +G+      + F  + T                +  ++      G G
Sbjct: 180 QTLQELTEHNVLCWGE------QTFREIKTAQGKRLT-LTGNFATTNPEALFYAGKAGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I +    ++K+     NLVR++ DV     TVY  YP+      + + F + +  K 
Sbjct: 233 IIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPKLEYQHTRTQLFLDHLKQKL 289


>gi|167562725|ref|ZP_02355641.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 306

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 126/294 (42%), Gaps = 11/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G + H
Sbjct: 11  LHVFISVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYH 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T++ Y ++   +  L ++  +P G LRI+        +    L EF   YP + +++ 
Sbjct: 71  DATAQPYRQVVDARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFRRYPKVSVEIR 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     P  + +L 
Sbjct: 131 YEDHLVDIVKERFDAGIRLADRLQPGMVGVKIAPALACALVATPGYLAQHGTPAKVADLA 190

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F    PK      W L    R +              +++     G+GIA +  
Sbjct: 191 RHMCIRF--RFPKSGRLHKWPLRDGRRDVDLDVAGRFVSTDTGAVIDAARAGAGIAFV-- 246

Query: 247 YI---VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++   ++D+     L  ++         ++  Y        KL+AF   +   A
Sbjct: 247 FMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIVVLREHA 300


>gi|116695449|ref|YP_841025.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529948|emb|CAJ96295.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 310

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 121/290 (41%), Gaps = 8/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F    R GSFT AA +LHL+QS+ISRQ++ LE  +G KLF R  R L LT  G +  
Sbjct: 21  LVAFEAAMRHGSFTRAAAELHLTQSAISRQVAQLEDFLGRKLFIREPRALRLTVSGQRYA 80

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   +         ++ +     +  L +A +  +    L   L  F   +P+IQ++L 
Sbjct: 81  EVVQRLLVGCAEATEDVMKVRSHTA--LTVACSSGVAVLWLTPRLASFREAHPEIQLRLT 138

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++    +S    D  +   +      L  R+L    +    AP YL      L+   L 
Sbjct: 139 VNDSLASLSPAEFDIGMYYLREGPPPGLAARRLYGEEVFPVCAPGYL--NGRTLAPAALA 196

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L+   D   + M    WLA    P    R + L  N Y  ++Q  + G GI L   +
Sbjct: 197 NETLLMLDDGQRQWMSWQTWLANQGLPDATLR-NVLTSNQYPILLQLAMEGHGIVLGWRH 255

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++        LVR  E   +     Y  +P         +AFR+++  +A
Sbjct: 256 MIDACLREGLLVRASEASASLGGGYYAVWPRDRMEPAAARAFRSWLVRQA 305


>gi|311108052|ref|YP_003980905.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310762741|gb|ADP18190.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           161 [Achromobacter xylosoxidans A8]
          Length = 315

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 125/297 (42%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V ++G F  A   L + +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 3   DLNDLYYFVQVVKNGGFAPAGRALGIPKSRLSRRIALLEDRLGVRLIQRSTRSFAVTELG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +    E  Q  +  +  +P G +R++    L    L   +  F++  P + 
Sbjct: 63  QEYYEQCLSMLAGAEAAQEVIDRTRAEPQGTIRMSAPPALIYYFLGDLVARFMVRCPKVH 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   ++ +D+  +  D A+R+R  PI+SS LI + L        A+P   ++   P  
Sbjct: 123 VFLKSFSRPVDVLREGFDIAVRVRFGPIESSDLIMKPLGMSCQCLVASPALARSIALPAD 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +   +  G    +     +        I  P    L  +  L++ Q  + G G+ 
Sbjct: 183 PHALSELPTLALGTEQRESHWRLD--GPDGARIVVPFTPRLVTDDMLALKQAALRGVGVV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +++D      LV +       + +V+  +P        ++   +F+  + ++
Sbjct: 241 ALPLLMIRDELDAGTLVDVGAPWQPEAGSVHAIFPSRRGLLPGVRELLDFLSSEYQE 297


>gi|194289751|ref|YP_002005658.1| transcriptional regulator of glycine cleavage system operon, lysr
           family [Cupriavidus taiwanensis LMG 19424]
 gi|193223586|emb|CAQ69591.1| transcriptional regulator of glycine cleavage system operon, LysR
           family [Cupriavidus taiwanensis LMG 19424]
          Length = 308

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 120/296 (40%), Gaps = 11/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  SFT AAE+L ++ S++S QI  LE  +G++LF R A+ L LT  G+
Sbjct: 8   LNPLRAFEVAARHLSFTRAAEELFVTPSAVSHQIKALEESLGVQLFIRDAKALVLTPAGT 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + +L      L          L++          L   +  F+  +PDI +
Sbjct: 68  AYLPSVQLAFKQLADATHRLHSKDRPA---LKVNMPPTFAVKWLIPRMDRFMKAHPDIDL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   N  ID   D  D AIR  +      L     + + +    +P      +   +  
Sbjct: 125 KVSTSNHRIDFERDDFDMAIRYGRG-DYPGLHCELCMAVEVIPVCSPALRHGPQPLETPS 183

Query: 185 ELDKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H L+            +   WL        +         S+L ++   + G G+A
Sbjct: 184 DLKHHTLLHDDSTYTDVSNPDWAMWLEHAGVTDVDASRGPSFWPSHL-VINAALNGLGVA 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+    ++ +     LVR+ E +  P  F+ +  +P+      ++++F ++I  + 
Sbjct: 243 LVKKNWIEQDLAEGRLVRLFESIRLPVEFSYFVVFPKERLEDRRIRSFTDWIRAEV 298


>gi|117619846|ref|YP_855443.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561253|gb|ABK38201.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 299

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 124/287 (43%), Gaps = 7/287 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  FY V + GSF+ AA+ L +S+  +SR +S LE+ +  +L  R  R L+LTE 
Sbjct: 1   MDISHLASFYEVVQKGSFSAAADSLGVSKGMLSRHVSALESTLNAQLLQRTTRRLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   E++      + ++Q  + +  G+LR    +  G  ++   L  F  L P +
Sbjct: 61  GRTLYQQAGEIFALARQAEQDIQALTEEDGGRLRFTCPVSTGDRMVNDLLARFAELCPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L   N  ID+S    D A+R    I   +L+   L  +     A+P  L     P++
Sbjct: 121 QVELNFTNAMIDMSQGEHDIALRAMSSIPD-NLVALPLGRLKDVVVASPALLAREGIPVT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL   + +  G         F      +          ++ N Y +++Q    G G A
Sbjct: 180 PYELGGRSCLLQGHNPAWEQWHFR---KGEEEAHILVQGKVRANHYSTVLQLARAGMGYA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             P  +V+       LV ++ +  T    ++  + +  +   K++ F
Sbjct: 237 KCPLMLVEPWLAQGELVTVLAEWQTGLHPLHVLHAQQRRVPRKIRLF 283


>gi|149921750|ref|ZP_01910197.1| putative Transcriptional regulator, LysR family protein
           [Plesiocystis pacifica SIR-1]
 gi|149817401|gb|EDM76874.1| putative Transcriptional regulator, LysR family protein
           [Plesiocystis pacifica SIR-1]
          Length = 302

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 125/286 (43%), Gaps = 9/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VAR G+F  AA  L L+++++S Q+  LE E+G++L  R  R  +LT+ G    
Sbjct: 1   MLVFAEVARLGNFAAAARHLGLTRAAVSHQVKRLEDELGVRLLNRTTRSQSLTDAGQVFL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L+     +     +P+  +R+  +++LG   +   L  F  LYP ++I L 
Sbjct: 61  ASCEAIATELDVVNRRMDNIRTEPAATIRLTCSVNLGLQAVVPALSAFHELYPKVEIDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +DI  +  D AIR    +  S L+ R L        A+P YL+    P  ++EL 
Sbjct: 121 MTDDIVDIVAEGIDIAIR-GGKLADSELMARSLGRSRYRICASPEYLQARGRPQKVEELG 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  + +                   P G      L+ N+  S + + + G G+A LP+Y
Sbjct: 180 GHAWVVYTLGKRTLTLSARGQTHTLTPAGP-----LRTNNAASRLYFTLRGHGLARLPEY 234

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +     +  L  ++ D    S  +   +      +  ++   +++
Sbjct: 235 DLSPRLASGELEAVLPDYDCGSLELQAVHHRGATGSRSIELLLDYL 280


>gi|254197952|ref|ZP_04904374.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|169654693|gb|EDS87386.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
          Length = 306

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 127/300 (42%), Gaps = 12/300 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++L
Sbjct: 3   MKRDPLGGLHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSL 62

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G + +  T++ Y ++   +  L ++  +P G LRI+        +    L EF   Y
Sbjct: 63  TEAGQRYYDATAQPYRQVVDARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFRRY 122

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + +++  ++  +DI  +  D  IRL   +Q   +  +    +     A P YL     
Sbjct: 123 PKVSVEIRYEDHLVDIVKERLDAGIRLADRLQPGMVGVKIAPALTCALVATPGYLAQHGV 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P  + +L +H  I F    PK      W     R   E  +          +++     G
Sbjct: 183 PSKLADLARHMCIRF--RFPKSGRLHKWPLRDGRRDVELDVAGRFVSTDTGAVIDAARAG 240

Query: 239 SGIALLPDYI---VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +GIA +  ++   ++D+     L  ++         ++  Y        KL+AF   +  
Sbjct: 241 AGIAFV--FMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLRE 298


>gi|91223314|ref|ZP_01258580.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
 gi|91192127|gb|EAS78390.1| transcriptional regulator, LysR family protein [Vibrio
           alginolyticus 12G01]
          Length = 308

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   AR  SFT AA++L+++Q +ISRQI  LE  +G  +F R  R + LT  G 
Sbjct: 9   LNSLVAFEASARHLSFTLAADELNVTQGAISRQIRQLEEYLGKAMFTRANRSINLTPTGL 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++  S+    L+  QI  +    +   K+ +ATT  +    L   + +F   + DI I
Sbjct: 69  QYYQAVSQ--SLLDIAQITGEVKKWQGEQKITVATTNAMAALWLLPKVAQFQNEHDDIDI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++  +  +D+     D A+   +   +   +   L +  +    +P YL+   +P   +
Sbjct: 127 RILASDNVLDLRRLDCDIALFYCRTPPAEMDVT-TLFSEEVFPVCSPLYLEKIGQPNEPE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E+    L+   +     +    W A+V  P   PR + + +N+Y  ++Q  + G GIAL 
Sbjct: 186 EIFNKTLLYLEESQRDWVNWEQWFASVGLPNISPR-NRMNINNYPMLLQAAINGQGIALA 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKN-TGKLKAFRNFIFLKARD 296
              +V D   +  LVR +E V++         P+        +K FR ++  +  D
Sbjct: 245 WGSLVDDYLQSGALVRPVEHVLSTPSNFSMLEPKNRGLIPASVKRFREWLLQQLPD 300


>gi|83749251|ref|ZP_00946251.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83724091|gb|EAP71269.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 318

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 124/291 (42%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AA++L L +SS+S  +S LE ++G++LF R  R L LT+ G
Sbjct: 5   DWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGVRLFERSTRRLRLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +     L   + E +  +  ++
Sbjct: 65  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMREHAGLR 124

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ +  + ID      D  + + R+P+  S ++ +++  +      AP  L+       
Sbjct: 125 IEVDVAPRQIDPLAQGYDIMLTVPREPLPDSGMVAQRVFDLRRAVVIAPALLERLGPLTH 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +           ++ +       +  P    ++ ++    +Q  V G G+A
Sbjct: 185 PDQLLDWPCLGLAGES-----EWQFRTPGGEALNLPLDFRMRTSNSELRLQAAVAGLGVA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +     ++      L  ++    +P   VY  +P       K+K F + +
Sbjct: 240 RITSAFAEELIAAGALREVLTGFQSPPMRVYAVFPGRRLMPAKVKVFMDAL 290


>gi|288957961|ref|YP_003448302.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288910269|dbj|BAI71758.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 338

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 121/270 (44%), Gaps = 7/270 (2%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +L +S S++ + ++ LE  +GI+LF+R  R LTLT +G         ++ ++E  ++EL 
Sbjct: 25  KLGISASAVGKAVARLEERLGIRLFHRSTRSLTLTPEGELFRDRCRRIFCEIEAAELELS 84

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
           ++   P GKLR++    L   L+   +  F+  YP+I++ L   ++ +D+  +  D  IR
Sbjct: 85  QTRAAPRGKLRVSLP--LIGMLMMPAVMAFMRAYPEIELDLDFTDRLVDVIDEGFDAVIR 142

Query: 146 LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
             +  + S L+ R++         +P Y      P   ++L  H  +         +E +
Sbjct: 143 TGEA-RDSRLMMRRVGAFSHRIVGSPEYFAAHGVPKVPEDLTAHACLHHKYPSTGKLERW 201

Query: 206 NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDV 262
             LA     I       L  ++    +     G G+A LP +  +       LV +++D 
Sbjct: 202 P-LARDGVDIDMALPVTLVASTLEPQICLAEEGFGLACLPQFAARAQLSRGTLVSVLDDF 260

Query: 263 ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I      +  +P +   + KL AF +F+  
Sbjct: 261 IRDVGAFHILWPASRHPSPKLSAFVSFMAE 290


>gi|170692405|ref|ZP_02883568.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142835|gb|EDT11000.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 297

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + VF  VAR  SFT AA +L +SQS++S  I  LE  +G++L  R  R ++ TE G
Sbjct: 5   NLNDILVFIAVAREKSFTRAAAKLGVSQSALSHTIRDLEARLGLRLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  +    +++ +   L +   KP+G +RI  T    + ++   L++ L  YPDI+
Sbjct: 65  EELFQAVAPRIEEIDASIAALSDFRDKPAGIIRITATDHPVETVIWPKLRKLLPSYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    +I  +  D  +R    +    +  R    I M    +P Y  N   P + 
Sbjct: 125 VEVTVDYGLSNIVEERYDIGVRFGDQVAKDMIAVRISPDIPMAIVGSPGYFANRELPKTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L +H  I+      K +  + W     +   + R++  + VN+   ++Q  + G G+ 
Sbjct: 185 EDLLRHECISLRMTTTKAL--YAWELKKGKRETQVRVAGQVTVNTQPQMIQAALDGFGLT 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P+  V  +    +L+ ++ D           YP   + +       + +  +
Sbjct: 243 FVPEDAVIQHMRNGHLLSVLRDWCPVWPGYRAYYPSRRQTSRAFSLVIDALKHQ 296


>gi|107028944|ref|YP_626039.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116689898|ref|YP_835521.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105898108|gb|ABF81066.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116647987|gb|ABK08628.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 321

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 19  MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 78

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL   P+
Sbjct: 79  EGAAFLERCRGLLSEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLADKPE 138

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 139 MQLSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPDYFRLHGRPK 197

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L KHN + F     +  ++  W       I   R++  L  N    + ++   G G
Sbjct: 198 SLDDLLKHNCLAFNL---QGGQNRGWYFQRHGKIATMRVTGNLDCNDGELLHRWVAEGLG 254

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     + +    +   L  +++D   P + +   YP+      +++ F +++   
Sbjct: 255 LGWRSTWEIAAQLETGELETVLDDYALPDYDILAVYPQQRYVPARVRYFIDYLREA 310


>gi|126641428|ref|YP_001084412.1| putative transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 269

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 129/272 (47%), Gaps = 12/272 (4%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ S++S+ IS LE  +G++L  R  R   LT +G + +    ++ + L+  +  +  + 
Sbjct: 1   MTPSAVSKLISRLEKRLGVRLLNRSTRQFQLTSEGCQFYEQGIQILNGLDELEQSVTANH 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             P G++RI T+     + L   +  F   Y +I+++  L ++ I++     D AIR   
Sbjct: 61  -IPKGRIRIHTSFSYWTHFLLPCISLFNQRYQEIELEAHLSDEVINLVEQRIDVAIRTG- 118

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P++SS+L+ R L + +     +P Y++    P    EL +H L+     +    ++  WL
Sbjct: 119 PLKSSNLVARSLGSTYKQYVCSPLYIEKYGCPEHPDELHEHQLL----DVSYQRQNKTWL 174

Query: 209 A-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDV-I 263
                + I       L+VN   +I+Q  + G+GIA L ++ ++       LV+I+ED  I
Sbjct: 175 FKKATQEISLTPSKVLKVNHGEAILQLALAGAGIAQLNEFQIRNALQQKQLVKILEDWNI 234

Query: 264 TPSFTVYFCYP-EALKNTGKLKAFRNFIFLKA 294
             S   +  +         +++ F +F+   A
Sbjct: 235 HASEEFHAVWIGHDKYVPNRVRTFLDFLVEHA 266


>gi|254501667|ref|ZP_05113818.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222437738|gb|EEE44417.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 304

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 131/295 (44%), Gaps = 6/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW++ R F V A  GS + AA  L+L+Q ++SRQ++ LE  +G+ LF R ++ L LT
Sbjct: 6   ITFDWNQARAFLVTAEEGSLSAAARALNLTQPTLSRQVAALEETLGVTLFERVSKSLVLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L      +        +     S +  G + I+TT  LG  LL   L+      P
Sbjct: 66  EAGVELAEHVRAMGEAASRVSLAASGQSQQIEGMVTISTTDILGIYLLPEILRNLRRKAP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I++   N   D+    AD AIR  +P     L  RKL       Y A  YL    + 
Sbjct: 126 GIEIRIRCTNSLSDLRRREADIAIRHVEP-DHPDLYARKLYDASAKVYGARSYLSRFGDS 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           LS+++   H+ I F D      +    L  +  P+ E  I  L   S     +Y   G G
Sbjct: 185 LSMKDAGAHDFIGFDDNP----QLVGHLRAMGLPVTEANIK-LSSPSGAVAWEYVRRGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + ++ D I    P LV   +D+    F V+      L  + +++   + +    R
Sbjct: 240 LGIMADEIAACCPELVPAFDDLTEVYFPVWLVTHRELHTSRRIRIVFDHLVEHLR 294


>gi|126464318|ref|YP_001045431.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|126106129|gb|ABN78659.1| transcriptional regulator [Rhodobacter sphaeroides ATCC 17029]
          Length = 307

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 127/296 (42%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D++R F  VA  GS +  A  + + QSS++R ++ LE  VG+ L  R  R +TLTE+G
Sbjct: 7   TLDRMRTFVRVAERGSLSAVARDMRIGQSSVTRHLNELERAVGVALLSRTTRRVTLTEEG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    ++   +     E + +    SG +R++ T  LG   +   +  F   +P+I+
Sbjct: 67  HRYYLQAVQILRLVAEASDEARRAGAASSGLVRLSCTAALGVRHIGRLIHRFQDRHPEIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ ID+  +  D AIRL   +  S L  R L        A+P YL     P + 
Sbjct: 127 VDLGLTDERIDLVREGVDLAIRLG-TLGDSRLKLRSLGRSRRILVASPGYLDRRGRPQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L++H  I   ++     E              P    L+V+  L+  +    G G+  
Sbjct: 186 ADLERHEGIRMFNIAGS--ERLTLEGPDGTTRVVPFGGRLRVDHGLAAREAYRAGRGLGP 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              ++V D   +  L RI+ D   PS  +            +++    F+  +  +
Sbjct: 244 AHLWLVDDLLTDGQLERILPDHALPSVPLSLLIAPERARISRIRLMVEFLAQEVAN 299


>gi|299533164|ref|ZP_07046548.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718694|gb|EFI59667.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 314

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 136/302 (45%), Gaps = 15/302 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V    SF  AA QL L+ S++SR +  LE   G++L +R  R L+LTE G+++
Sbjct: 10  EMLVFAKVVEQRSFAAAARQLDLTTSAVSRSVGRLEAHWGVQLLHRTTRSLSLTELGAEV 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   S++              S  P G +R+      G+  L   L      +P++++ +
Sbjct: 70  YAACSQLAQTASDIHAIAGHYSGVPRGTVRLTAPTIFGEIWLSAQLPALRRQWPELEVAV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNC-REPLSIQ 184
            L ++  D++    D AIRL +P Q    ++ R+L  +   A A+P YL+   + P   Q
Sbjct: 130 SLSDQMQDLAQQGLDLAIRLTRPEQLPPHMVARELRQVRYIAVASPAYLRGLIKPPEHPQ 189

Query: 185 ELDKHN---LIT--FGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           EL + +    IT  +GD   +         + +  + E  + S L ++S   I+   +  
Sbjct: 190 ELGREHGVACITLGYGDFQSRLQWVHGQTRSPEAAVTEVAVHSPLSMDSSTGIINLALQH 249

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITP----SFTVYFCYPEALKNTGKLKAFRNFIF 291
            GI L+ D+  +    +  LV+++ D +        T Y  Y  +     K++A  + + 
Sbjct: 250 QGIGLVADFAAQAVLSSGALVQVLPDWLLTGNYAPRTAYALYMPSRHLPLKVRALIDHLV 309

Query: 292 LK 293
             
Sbjct: 310 EA 311


>gi|114776626|ref|ZP_01451669.1| putative transcriptional regulator [Mariprofundus ferrooxydans
           PV-1]
 gi|114552712|gb|EAU55143.1| putative transcriptional regulator [Mariprofundus ferrooxydans
           PV-1]
          Length = 300

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 135/291 (46%), Gaps = 6/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  W+ +R F  VA +GS + AA  L LSQ ++SR I  LE+   + LF R ++GL LTE
Sbjct: 3   SIPWELIRSFLAVADAGSLSAAARSLELSQPTLSRNIQTLESHTRLNLFKRTSQGLNLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+ L     ++ +  ET   ++   S + +G++RI+    +G  LL   +  F   +P 
Sbjct: 63  EGTALVEAAQQMNNSAETFARQVSGLSTELNGEIRISANEIVGIYLLPAVIAAFRKQHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++++ N+  +++   AD A+R+  P Q   L+ R+L  + +  YA   YL     P 
Sbjct: 123 VHIEIVISNRASNLNKREADIALRMFHPKQ-PDLVARRLPDMPLGFYAHKSYLDQHGTPE 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  EL +H LI F               T      E     L+ +S +  +Q  + G GI
Sbjct: 182 SFNELREHALIGFDQNRDFIDGARAMGFTFSNNDFE-----LRTDSLMLQIQLALQGCGI 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 + +  P + RI+E    P    +       +   +++AF+  +  
Sbjct: 237 VGTHVGVARQWPEMKRILEWAPIPPLEFWVVCHADTQYNARIRAFKRHLIA 287


>gi|145300088|ref|YP_001142929.1| DNA-binding transcriptional activator GcvA [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142852860|gb|ABO91181.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 306

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 120/291 (41%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AAE+L ++Q++IS QI  LE  +GIKLF R  R L LTE+G 
Sbjct: 8   LNALKAFEAAARHLSFTRAAEELFVTQAAISHQIKALEEYLGIKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  +     +L   S    G L ++         L   L +F   +PDI +
Sbjct: 68  GYFLDIKDIFTSISEATDKLLARSA--KGALTVSLQPSFAIQWLVPRLVKFSERHPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL T ++    +P  L   +   +  
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLHTEYLIPVCSPLLLTGPKPLRTPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+          +   W   +D          +  +    ++Q  + G G+AL 
Sbjct: 185 DLIRHTLLH----DTSRRDWKAWFRQLDIDAPNVNQGPI-FSHSTMVIQAAIHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + +   +   L+   E V+      Y    E   + GK+ AFR+++  
Sbjct: 240 HSVLAQPEIEAGRLICPFEQVLVSKNAFYLVCQEQQSDQGKIVAFRDWMLE 290


>gi|270262801|ref|ZP_06191072.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043485|gb|EFA16578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 291

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 127/279 (45%), Gaps = 13/279 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  VAR G+   AA +LH+ Q+++ R+I+  E  +G KLF R  +  +L+  
Sbjct: 2   MNWDDARFFLAVARCGTLRKAANELHVDQATVGRRITAFEENLGSKLFIRTPKSFSLSPL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      + + ++    +         G +RIATT  + +  +   LK+    +P I
Sbjct: 62  GEEMLADVMNMENSVQAIGRKATSGDDSLCGNVRIATTDTMAEAFVIPALKDLREQHPLI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+      DIS   AD AIR  +P  S  LI +++ TI M  YA   YL     P  
Sbjct: 122 TVTLLTAVNISDISYRGADLAIRGARP-DSDELIIKRMATIEMGLYATQDYLDKHGLPTK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  H+L+ F    P+ +   +W       + +P +  LQ NS L +      G GI 
Sbjct: 181 GDHLRGHDLLMF----PRELVPRHWNNFCGEALIDPNV-VLQCNSQLLLRSATRSGLGIG 235

Query: 243 LLPDYIVKDNPNLVRIME---DVITPSFTVYFCYPEALK 278
           LL  ++   +P+LVRI     D +     ++      L+
Sbjct: 236 LLSSFLADKDPDLVRIFPENKDWV----DIWLVLHPDLQ 270


>gi|118497867|ref|YP_898917.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. novicida U112]
 gi|194323840|ref|ZP_03057616.1| LysR substrate binding domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|118423773|gb|ABK90163.1| transcriptional regulator, LysR family [Francisella novicida U112]
 gi|194322204|gb|EDX19686.1| LysR substrate binding domain protein [Francisella tularensis
           subsp. novicida FTE]
          Length = 298

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   IS+QI  LET+    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKAIGISPPVISKQIQILETKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 64  LLYEKASLILNELEATEEKIFAEDILIDSELKISAPNSFGIKYLCNIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+ +     A+  YLKN   P +I+
Sbjct: 124 NINLSDSYINIIDEDFDLVIRIGA-LDDSNLITKKLMPMPSLLCASEQYLKNYGIPKTIK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  I + +       +   L +V++         +  NS   ++Q C+ G GIA L
Sbjct: 183 DLENHLFIQYNN---HSSSNRIILESVNKTEIINVRQRIVTNSAEMMLQGCLDGLGIAKL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           P + + D   +  LV ++ D   P    +Y           K++    +I
Sbjct: 240 PLFEIIDKIHDKKLVHLLPDARNPIEKNLYLISSRDKYRLKKVRLLSAYI 289


>gi|330882796|gb|EGH16945.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 274

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 115/268 (42%), Gaps = 7/268 (2%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
           ++SR++  LE ++G +L +R  R L LT+ G   H         L     +L     +P 
Sbjct: 4   TVSRKVQQLEIQLGTRLLHRSTRKLVLTQAGEDFHERCVGAVDGLMDAAEQLVSGREEPG 63

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G+LRIA   D         + +FL  YP +Q++ +L ++  D+  D  D A R   P+Q 
Sbjct: 64  GRLRIAAMADFFDFFSMEWVADFLAEYPRVQLEFVLSDERADLIADRLDIAFR-GGPLQD 122

Query: 153 SSLIQRKLVTI-HMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATV 211
           S  + R+L+   H    A+P Y+     P S+Q L  H  ++     P     +  L   
Sbjct: 123 SGYVGRQLIEEGHDTMVASPAYIAAHGMPDSLQSLHGHYCVSTAH--PGGSTVWRLLGPD 180

Query: 212 DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFT 268
            +       S    N+  ++ +  + G GIALLP  +++    +  LV ++      S  
Sbjct: 181 AKMHEVQMASRFNANTAQALRKATLAGLGIALLPATLIRSDLRDGRLVPVLTQYQRTSHG 240

Query: 269 VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++  YP        + AF   +  K RD
Sbjct: 241 LHVLYPSRQHLPPAVSAFIALVMEKLRD 268


>gi|217979461|ref|YP_002363608.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
 gi|217504837|gb|ACK52246.1| transcriptional regulator, LysR family [Methylocella silvestris
           BL2]
          Length = 299

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 135/292 (46%), Gaps = 10/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L  F  V   GSF  AA QL +  ++ SR++  LE+ +G +L  R  R L +T+ G 
Sbjct: 4   LDDLITFVRVVERGSFIAAARQLGIPPATASRKVQDLESRLGAELLRRTTRRLVVTDAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++   ++  + ++  ++  +  + KPSG LR+     +G  L+   L +F  L P++QI
Sbjct: 64  EVYERAAQGLNLIDEAELVAKTHTSKPSGVLRVLAPYAIGGLLIDRMLSDFQKLCPEVQI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L+N+ +D+     D A+R+   ++ S  + R L+       A+P YL       SI+
Sbjct: 124 QLTLNNEPLDLIEHGFDVALRIGA-LKDSGYVVRHLLNGERRIVASPAYLAANGPIESIE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L+ H  +            +N+   A   +    PRI+    N     + + + G G A
Sbjct: 183 DLETHAFLAASIDSSGGAAAYNFSNGAEAKQLTLSPRIA---SNEPSVALNHALNGEGFA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +L ++ V+   ++  L  ++              +P    +  K++ F +F+
Sbjct: 240 ILAEFYVRPHLEDGALKVVLPQWHSAEDLCASLIFPRHATSDPKIRMFIDFL 291


>gi|170736339|ref|YP_001777599.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818527|gb|ACA93109.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 299

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 122/300 (40%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F  AA    LS S +S  +  LE  +G++L +R  R +  T
Sbjct: 1   MQTDLGDLNAFMAVARASGFRDAARVTGLSASGLSEAVRRLEARLGVRLLHRTTRSVVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +    ++      + E   +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGERLLARLAPALTEVAAALDGIDEFRGRPAGTLKLNVPVSASRLVLPAIVPRFLEAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI++++  D   +D+     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 DIRLEVTADESFVDVLAAGCDAGIRYDERLEQD-MIAVPIGPRIQRFATAAAPGYLDRHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYC 235
            P   ++L  H  +  G      M  + +    +    EP    L V    +   ++   
Sbjct: 180 RPRHPRDLLGHRCLR-GRFASGAMPPWEYERDGEVVRVEPAAGPLLVQIGGATELMVDAA 238

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G+G+  L +  V+   ++  L  ++E    P    +  YP        L+AF +FI  
Sbjct: 239 IAGTGVLYLFEDWVRPHFESGALEPVLEPWWRPFSGPFLYYPGRRLVPPALRAFIDFIKE 298


>gi|91782924|ref|YP_558130.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686878|gb|ABE30078.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 301

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 6/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++ VF  VA++GSFT AAE++  S+S++ + +  LE  +G +LF R  R + LTE G 
Sbjct: 9   INEIAVFVAVAQTGSFTRAAEEIGSSKSNVGKAVQRLEARLGSQLFQRTTRAVRLTEDGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E    L   + +L     +P+G+++I      G+ LL   + +    YP + +
Sbjct: 69  TYLLAAQEALESLREAEQQLASRRAEPAGRVKIDLPAGFGRLLLPSFI-QLREKYPKLTV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++  D   +  D  +R+      S    RKL  + +  YA+P YL    +  ++ 
Sbjct: 128 EMALTDRMSDPVGEGWDIVVRIGALPDDSEFTVRKLCDLRLGLYASPEYLARRGDVKTLA 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ I F     +            R I    +  L      ++++  V G GI  +
Sbjct: 188 ELTDHDAIVFRGPTGRLRSWTTRENDTVREIVPHPVLVLA--DGQALVEAAVAGFGITQI 245

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            D +   +     LV ++ +       V+       K T K +A  N +    + 
Sbjct: 246 YDRVALPHVRAGRLVHLLPEADVDGPPVHAIISLGQKMTAKTRAAVNHLAETLQQ 300


>gi|160900498|ref|YP_001566080.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366082|gb|ABX37695.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 314

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 129/300 (43%), Gaps = 13/300 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F      GS   AA QL +S ++ S+ I+ LE E+G +L  R  R + LTE G
Sbjct: 3   NLRSIETFVKALEGGSIASAARQLGISPAAASQNIARLERELGTRLITRTTRSMALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       V  +LE  Q +L +   +  G+LRIA     G+++L   L  F   +P ++
Sbjct: 63  ERYLARVGPVLQELEKAQSDLSQLHGELQGRLRIACMAAFGRHVLAPLLPVFAAQHPRLE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++ ++ +D+  +  D ++R R  ++   +  R+L  +     A+P YL+    P + 
Sbjct: 123 LELLVVDRQVDVLKEDVDISVRYRDVLE-PGMAVRQLAAVPRVLCASPAYLQAHGRPRTA 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H  + +          + +     R   + R++ +  +   ++ +  V G GI  
Sbjct: 182 QDLLDHACLLYRREADGRFMRWPFSRDGKRVDPQLRVTAI-ASDVDALTEMAVAGGGIVW 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF-----------TVYFCYPEALKNTGKLKAFRNFIFL 292
           +  +I         +    + P+              + C+ +      K++A  +++  
Sbjct: 241 IGSFIAHRYMREGLLQPLTLGPARKGQLHFEDTTLDFFACFRDRQYVPTKVRALVDYLVE 300


>gi|59714231|ref|YP_207006.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59482479|gb|AAW88118.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 309

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 130/304 (42%), Gaps = 17/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  + +      A  +L LS ++++ ++  LE    +KL  R  R ++LT+
Sbjct: 1   MDKFSDMTMFVSIVKHQGLAAAGRELGLSPATMTARLQALEERYRVKLLNRSTRHVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++ + E+   +  T+  +     +  G LR+A   D+G+  +   L EF   YPD
Sbjct: 61  AGELYYKASLEILDNVNETENLILNGVKEVKGALRVAAPKDIGKQYILPILSEFCEKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +I+    D  +R  + +  SSLI R+L + H    A+P YL     PL
Sbjct: 121 VVPYLYLNDDVSNIAESGIDIVVRYGE-LADSSLISRRLSSSHRVLCASPDYLAKYGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + Q+L  H+ +    ++    E   W     D+      +     +    +  + + G+G
Sbjct: 180 TPQDLINHHCLA---MVRSHEELKTWHFQGSDKKNVITVLPKRFSDDGEVVRYWALEGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVIT--------PSFTVYFCYPEALKNTGKLKAFRNF 289
           IAL     V+D+     LV ++   +          S  +   Y        +++ F +F
Sbjct: 237 IALKSILDVQDDINNRRLVTVLNGYMANFNTSTSVSSADLNVVYMSKKYQPKRIRLFLDF 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LLER 300


>gi|17547217|ref|NP_520619.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17429519|emb|CAD16205.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 308

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 127/296 (42%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W+    F  V  +GSFT AAE L + +SS S  +S LE  +G++L  R  R L LTE
Sbjct: 3   TMEWNDWETFCRVVEAGSFTAAAEALGIPKSSASAAVSRLEASLGVRLLTRTTRQLRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS  +   + ++ +L     +   +S   SG LRIA   ++G   L   + + L  +P+
Sbjct: 63  AGSHFYDDIAPLFERLREVHADTTAASETVSGTLRIAAPYEVGAQHLTEPVCQTLARFPN 122

Query: 122 IQIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +QIQ+ +  +  D+     D   + + + +  SSL+ R++V I    YAAP  L      
Sbjct: 123 LQIQVHISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVMIPRALYAAPSLLAGRAPL 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L     ++  D            A    P   P    LQ  +     +  V G G
Sbjct: 183 AAPADLSGWPCLSGPDDASWVFRPAG--APAAEPFEVPIQPRLQTLNAEMRARAAVRGLG 240

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A +   +     +   LVR++ D       VY   P       K++ F + +  +
Sbjct: 241 VARMARSVGDAEVETGRLVRVLSDYEPTPLRVYALMPARKLVPRKVRVFLDALEAQ 296


>gi|121727008|ref|ZP_01680204.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147672172|ref|YP_001214899.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|262169006|ref|ZP_06036700.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|121630642|gb|EAX63031.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|146314555|gb|ABQ19095.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|227014713|gb|ACP10922.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|262022705|gb|EEY41412.1| transcriptional regulator [Vibrio cholerae RC27]
          Length = 295

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I++QLI       +   + D  I R  + + S S     L       YA+P YL     P
Sbjct: 121 IRVQLITT-TPGQLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++QEL +HN++ +G+      + F  + T                +  ++      G G
Sbjct: 180 QTLQELTEHNVLCWGE------QTFREVKTAQGKRLT-LTGNFATTNPEALFYAGKAGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I +    ++K+     NLVR++ DV     TVY  YP+      + + F + +  K 
Sbjct: 233 IIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPKLEYQHTRTQLFLDHLKQKL 289


>gi|16759824|ref|NP_455441.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16764313|ref|NP_459928.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142403|ref|NP_805745.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62179476|ref|YP_215893.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167995290|ref|ZP_02576380.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168230844|ref|ZP_02655902.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168236860|ref|ZP_02661918.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168240801|ref|ZP_02665733.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263563|ref|ZP_02685536.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168466535|ref|ZP_02700397.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194444071|ref|YP_002040151.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194450844|ref|YP_002044946.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194471454|ref|ZP_03077438.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734779|ref|YP_002114005.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197248691|ref|YP_002145871.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197264444|ref|ZP_03164518.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198243475|ref|YP_002214877.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390790|ref|ZP_03217401.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929881|ref|ZP_03220902.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207856345|ref|YP_002242996.1| hypothetical protein SEN0856 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213052422|ref|ZP_03345300.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428600|ref|ZP_03361350.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649846|ref|ZP_03379899.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213865545|ref|ZP_03387664.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224582762|ref|YP_002636560.1| hypothetical protein SPC_0952 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238913428|ref|ZP_04657265.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289830111|ref|ZP_06547542.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25319791|pir||AG0610 hypothetical transcription activator acT [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16419463|gb|AAL19887.1| putative transcriptional regulator, lysR family [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16502117|emb|CAD05353.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138033|gb|AAO69594.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62127109|gb|AAX64812.1| putative transcriptional regulator, lysR family [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|194402734|gb|ACF62956.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409148|gb|ACF69367.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457818|gb|EDX46657.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710281|gb|ACF89502.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630924|gb|EDX49510.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197212394|gb|ACH49791.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242699|gb|EDY25319.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197290063|gb|EDY29420.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197937991|gb|ACH75324.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603235|gb|EDZ01781.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320875|gb|EDZ06076.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205327016|gb|EDZ13780.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334777|gb|EDZ21541.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205340088|gb|EDZ26852.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205347765|gb|EDZ34396.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206708148|emb|CAR32441.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224467289|gb|ACN45119.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246169|emb|CBG23973.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992683|gb|ACY87568.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157496|emb|CBW16986.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911941|dbj|BAJ35915.1| LysR-family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223276|gb|EFX48345.1| Transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322616385|gb|EFY13294.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619635|gb|EFY16510.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622669|gb|EFY19514.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628582|gb|EFY25369.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631518|gb|EFY28274.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637045|gb|EFY33748.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641594|gb|EFY38231.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644451|gb|EFY40991.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649579|gb|EFY46010.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654119|gb|EFY50442.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658034|gb|EFY54301.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663508|gb|EFY59710.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670244|gb|EFY66384.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671480|gb|EFY67602.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676836|gb|EFY72903.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682761|gb|EFY78780.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686440|gb|EFY82422.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322713945|gb|EFZ05516.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323129218|gb|ADX16648.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323196106|gb|EFZ81269.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196748|gb|EFZ81892.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202972|gb|EFZ88006.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209013|gb|EFZ93950.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211918|gb|EFZ96746.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215150|gb|EFZ99895.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222353|gb|EGA06731.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226874|gb|EGA11057.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229828|gb|EGA13951.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233053|gb|EGA17149.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240788|gb|EGA24830.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243105|gb|EGA27125.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247426|gb|EGA31382.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251648|gb|EGA35515.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257364|gb|EGA41062.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261953|gb|EGA45519.1| transcriptional regulator, LysR family protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267968|gb|EGA51447.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271965|gb|EGA55380.1| LysR family transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326622630|gb|EGE28975.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332987845|gb|AEF06828.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 303

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 122/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 5   DLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  +    V+P G +++   + L    +   L +F+  YPD+ 
Sbjct: 65  QTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R +P + S L+ R L       +A+P  +     P +
Sbjct: 125 LQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPDLIARMGIPSA 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     ++      K +  +                 +     L++ +  + G G+ 
Sbjct: 185 PAELSHWPGLSLAS--GKHIHRWELYGPQGARAEVHFTPRMITTDMLALREAAMAGVGLV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +VK+      LV ++E+       ++  +P        ++A  +F+  +
Sbjct: 243 QLPVLMVKEQLAAGELVAVLEEWEPRREVIHAVFPSRRGLLPSVRALVDFLTEE 296


>gi|332716920|ref|YP_004444386.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325063605|gb|ADY67295.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 322

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 115/290 (39%), Gaps = 5/290 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +  +L     +AR G+F  AA  L +S +++S  I  LE  +G++LF R  R ++LT+
Sbjct: 24  QLNLRELEAVIAIARRGTFRAAAIDLGMSTTALSHTIGRLEAGLGVRLFNRTTRSVSLTD 83

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +  +     L      ++     PSG +RI       + ++   + EFL  YP+
Sbjct: 84  AGRLFVQQVAPSLQDLHAALETVRSQRETPSGTIRINAAPFAARAIISPLVLEFLRRYPE 143

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+ + K +DI  D  D  +R+   + S  +              +P Y     +P+
Sbjct: 144 MNVDLVTEGKMVDIVNDGFDLGVRVAGLVPSDMIAVSLGRPQRHAVVGSPDYFAQHPKPV 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  I                   D P+       + ++    +    + G+G+
Sbjct: 204 VPPDLLNHRCIRVRLPDGSLFRWR--FEKDDEPVQIDVRGPITLDEAGLVRTSVLEGTGL 261

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
               +  V  +     LVR++ED   P   +   YP     +  +KAF +
Sbjct: 262 GYTMEEEVLPDIKAGRLVRVLEDWTPPYPGLCLYYPGRRNLSAGVKAFLD 311


>gi|301046176|ref|ZP_07193350.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300301833|gb|EFJ58218.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
          Length = 299

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R    +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTHSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|262395021|ref|YP_003286875.1| glycine cleavage system transcriptional activator GcvA [Vibrio sp.
           Ex25]
 gi|262338615|gb|ACY52410.1| glycine cleavage system transcriptional activator GcvA [Vibrio sp.
           Ex25]
          Length = 306

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNSLRVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLSLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  +     ++ E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTSIAEATDKVLERSE--KGALTISLPPSFAIQWLVPRLADFNAQEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +   S+ 
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPSLLLGNKPLESLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+   A      G         +    ++Q    G G+AL 
Sbjct: 185 DLKLHTLLH-----DTSRKDWKQFARHYNIEGINVNHGPIFSHSTMVLQAAAHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + K   +   L+   ++V+      Y    E   + G++  FR+++   AR
Sbjct: 240 NNVLAKPEMEAGRLIAPFDEVLISKNAFYVVCHEQQADMGRIATFRDWMLATAR 293


>gi|300313630|ref|YP_003777722.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076415|gb|ADJ65814.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 310

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L+ F  V    SF  AAE L LS S++S+ I  LE  +G +L  R  R +  +  G
Sbjct: 5   EFNELKAFVAVVERQSFVRAAEHLGLSPSALSQTIRQLEDRIGARLLNRTTRSVAPSANG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+R  + ++ ++     +  E++ + SG+LRI T     + ++   L  F   +PD+ 
Sbjct: 65  ELLYRRVAPLFREMAAAVAQASEATGQMSGRLRINTLGIAARTIIAPRLARFHQAHPDVV 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +++D+   DI     D  IR+   ++   +  R    ++M A A+P YL     P S 
Sbjct: 125 LDIVVDDTLTDIVAGRFDAGIRVGNRVEKDMVAIRLTPDLNMVAVASPDYLARRGVPRSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I +   +      +       + +       +  N     +   + G GIA 
Sbjct: 185 KDLHDHTCINWRLQMDGRHYRWE-FKKRGQQLEVAVDGPIITNHADIGIAAALGGLGIAY 243

Query: 244 ------LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 + + +      LV+++ D       ++  YP        L AF + +  +
Sbjct: 244 HFERDGVSELL--SQGRLVQVLADWSISRPGLFLYYPNRQHRPALLGAFIDCLLDR 297


>gi|261820606|ref|YP_003258712.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604619|gb|ACX87105.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 301

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 133/303 (43%), Gaps = 12/303 (3%)

Query: 1   MSFDW---DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M   W   +   VF  V R+ SF+ AA +L LS + I+++I+ LE+ +G+KLF+R+ R +
Sbjct: 1   MKNKWPQIEDFNVFLTVVRTSSFSAAAVELGLSNAYITKRINILESVLGVKLFHRNTRDI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT  G        E+      +  ++Q+      G L I+++   G+N L      F  
Sbjct: 61  RLTSAGEVARIQAEELIRNARNSIEKIQDVRNDVIGSLHISSSFGFGKNHLSQPFSFFSK 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P ++I+L L +  +D+  +  D  I + +         +K+        A+P Y  + 
Sbjct: 121 NNPHLKIKLTLTDTKLDLIKEGIDLEIMVGENFND-RYYAKKIADNKRILCASPTYFIDK 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
             P + +EL  H+ +   +   K      W       +   R++  L  N+   IMQ+ +
Sbjct: 180 DMPTTPEELANHSCLFLQE---KGQTFGLWRLYNGINLQTVRVNGDLSSNNGEIIMQWAL 236

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIA    +  +   +   L+ I+ D    + +++  YP  L ++ K K    F+   
Sbjct: 237 AGHGIAYRSQWDARKYIEKKQLIHILPDYYEQA-SIWAVYPTKLDDSLKTKRCVEFLEEY 295

Query: 294 ARD 296
            RD
Sbjct: 296 FRD 298


>gi|163759793|ref|ZP_02166877.1| transcription regulator, LysR family, putative [Hoeflea
           phototrophica DFL-43]
 gi|162282751|gb|EDQ33038.1| transcription regulator, LysR family, putative [Hoeflea
           phototrophica DFL-43]
          Length = 301

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +RVF  VA   SF  AA  L+++ +S++R ++ LE ++  +L  R  R + LT  G
Sbjct: 3   DIKPIRVFLKVAELKSFAAAARNLNMTPASVTRIVARLENDLDTQLLKRTTRQVALTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +++    + +  + +    E+  ++    G+L I   + LG  LL   +  F L YP++ 
Sbjct: 63  ARVAARFAPIVEQFDQIAGEVARAARPDHGRLAINAPMSLGLRLLPDLIDSFRLAYPNVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L +  +DI  +  D AIR+  P    S I RK+  +  HA AAP        P + 
Sbjct: 123 LNVQLTDTLVDIVEENCDLAIRISGPPTDKSTIWRKICEVPRHAIAAPGLFDRIDRPQTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +   +++       +  F            P  + L  NS   +      G GIA+
Sbjct: 183 DDLKREFCMSYSANGGSEIWRFR---KAQITRNIPAGTELVSNSGDFLYSLVKSGDGIAV 239

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LPD+I KD      + ++++D       +   YP        + +F +F     RD
Sbjct: 240 LPDFIFKDALAREEVEQLLDDWEIQPLWLTLFYPPYETLPPLVASFSDFFEAYLRD 295


>gi|90409894|ref|ZP_01217911.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
 gi|90329247|gb|EAS45504.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
          Length = 294

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 138/301 (45%), Gaps = 18/301 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +  SGS T AAE+L LS+S +S  +  LE  + +KL  R  R  +LT+ G + +
Sbjct: 1   MQVFAQIVESGSITKAAEKLDLSKSVVSHHLQALEQYLEVKLLTRTTRRQSLTDAGKRFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   E+   +   + E +ES    +G + + +   L  +L+   + EF+  +P I+ QL+
Sbjct: 61  QRCLEMRKLMSLAEEEARESCTDFAGTITVTSPHTLMTHLIGPTMCEFMQTHPRIEPQLL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL--KNCREPLSIQE 185
            ++  +++   Y D ++ + + +  S+    KL  +       PHYL  K  + P++  +
Sbjct: 121 ANDLRLNLIDKYIDLSVTVGE-LPDSTSRAVKLGNLEQVLCCHPHYLVKKEIQLPVNGTD 179

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN----SYLSIMQYCVLGSGI 241
               + I          E  N   + +   G+ +    + N    S  +I    + G GI
Sbjct: 180 FSGFDYIA------NQWEGMNIERSFNIGKGQIQTYQFRANRVGDSVPTIRMMTLAGLGI 233

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA--RD 296
           A LP   +++      LV I+ + +      Y  +    +   +++AF +F+ ++A  + 
Sbjct: 234 ACLPKRAIEEELRHSKLVNILPNDMKLEAPFYAVHNYGAQMPIRIRAFIDFLKIRAESQT 293

Query: 297 W 297
           W
Sbjct: 294 W 294


>gi|89091863|ref|ZP_01164818.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
 gi|89083598|gb|EAR62815.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
          Length = 300

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 130/292 (44%), Gaps = 15/292 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +R F  VA+ GSFT AAE+   S++S+S+Q+S LE  + ++L YR  R + LTE G 
Sbjct: 6   WSGIRSFLAVAKCGSFTLAAEETGTSKASLSQQVSQLEKTLNLQLLYRTTRSIRLTEVGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLG-QNLLQGNLKEFLLLYPDIQ 123
              +       +L+  Q          SG +++ +   L  ++++   L EF   YPDI 
Sbjct: 66  GYLQRCEAAVAQLDAAQEWAVAHKQIISGTIKMNSVGGLIGESVIAPLLIEFQKHYPDIC 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  D  D  +R+   +  SSLI R+L  I     A+P +++  +     
Sbjct: 126 VELDFSSRRVDLLKDDYDLVLRMGD-LPDSSLIARRLHQIKTCYVASPEFIQRQKPIRHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            ++    +I        C    +W    D+   +       ++ +   ++     G G+A
Sbjct: 185 LDISGIPMI--------CGSVTDWTFNKDQEQCQISFKQGFKIPNGRVMLDAAKSGLGVA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L D  V+    +  L  I+E+    +  +    P A     ++K   +++ 
Sbjct: 237 RLADIYVQPAIRSGALEEILEEWSITT-PLSLVCPPARHQLDRVKLLMDWLV 287


>gi|206579547|ref|YP_002239365.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288936216|ref|YP_003440275.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206568605|gb|ACI10381.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288890925|gb|ADC59243.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 313

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 136/289 (47%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF +VAR   F  AAE+L +S + +S+++S LE  + + L +R  R +T+TE+G 
Sbjct: 7   LNDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVVLLHRTTRRVTITEEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +   ++    EL +    P G LRI ++   G+ ++   L    L YP +++
Sbjct: 67  RIYEWAQRILQDVDEMMDELSDVRQVPQGTLRIISSFGFGRRVVAPALSALALQYPQLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  + ++ +D+  +  D  IR+   I + +LI R+L   H    A+P +L     P  + 
Sbjct: 127 RFDVQDRLVDLVNEGVDLDIRVGDDI-APNLIARQLAANHRVLCASPQFLARHPPPKQLS 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   +           L + +          L  N    + Q+C+ G GIAL 
Sbjct: 186 DLAALPCLVIKERDHPFGIW--QLHSKEGQHAIKVTGPLSSNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V++   + +LV ++ +   P+  V+  Y   L  + K++    F+
Sbjct: 244 SWWDVRENIASGHLVHVLPEFFQPA-NVWAVYVSRLATSAKIRTTVEFL 291


>gi|319791617|ref|YP_004153257.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594080|gb|ADU35146.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 339

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 122/288 (42%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  V   G F+ AA+QL L+ S++S+ I  LET + + L +R  R   +T  G + +
Sbjct: 32  LRSFATVVERGGFSPAAKQLGLAPSTMSKHIRALETGLRVALIHRTTRTFDITPSGQRFY 91

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +++     L E +    G+LR+  +     ++L   L  F+  +P++ I L 
Sbjct: 92  ERCKGILREIDQA-SLLAEPATVLKGELRVVASPSFTASVLLPGLPAFMTSHPELMIDLR 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +  +D+  +  D  I L +P Q +     KL   +    A+P YL+    P S  +L 
Sbjct: 151 VGSAQVDLIREGVDVWITL-EPAQRNKAPSIKLARNNCVVCASPAYLERHGIPESPGDLK 209

Query: 188 KHN-LITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H  L+ +G    +      W   V R +   P       ++  ++   C+ G G+    
Sbjct: 210 RHAGLLGYGSPYAE-----EWPFLVGRQVKRYPIRKAFASDNGDALRSCCLEGLGLGGFY 264

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + V  +     LV ++         V+   P     +   +AF  F+
Sbjct: 265 AFHVAADLEAGRLVEVLSSYRANPGGVHAIVPHRHYMSPGARAFIEFV 312


>gi|160895774|ref|YP_001561356.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361358|gb|ABX32971.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 303

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 125/295 (42%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     + + F  V   GS+T AA+ L +S++  S  +  LE  + + L  R+ R + LT
Sbjct: 8   MHTLLHRAQTFLAVVDFGSYTRAADFLGISKAMASLHVKSLEEALSVALLVRNTRSIALT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +     +   + +       S  + +G+LRI+TT + G+  +   +  FL  YP
Sbjct: 68  ETGREFYDEFKGIVRDVGSAFDNAMHSGNRIAGRLRISTTSEYGEKYILPLIPAFLERYP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +   +++   D+  +  D  +RL   +  SS   R+L    +   A+  +L++    
Sbjct: 128 GISVAYDVNSSLSDLVAEKLDLVVRLGH-LADSSFKSRRLAGYDIVLVASAAFLRSHPV- 185

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L     I   +L       +       + +     +  Q NS  +I        G
Sbjct: 186 RQPEDLADLPWIANSNLAHPTA--WTLRTAGGQGVDVVGRAAHQSNSSTAIRALARSSLG 243

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +A+LP + V+D+     L R++ D   P   +   +P++     K + F +F+  
Sbjct: 244 VAVLPAWFVEDDLAGGVLQRVLPDHALPPQPISVVFPDSSHLPRKTRVFIDFLCE 298


>gi|254719820|ref|ZP_05181631.1| LysR family transcriptional regulator [Brucella sp. 83/13]
 gi|265984838|ref|ZP_06097573.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306839518|ref|ZP_07472326.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|264663430|gb|EEZ33691.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306405463|gb|EFM61734.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 293

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 134/284 (47%), Gaps = 7/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+  +LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVAHRLVDYTLCLYAHRSYLEENSTPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L++H LI + + +       N        I        +V+S L  ++    G+GI 
Sbjct: 180 PEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +L  +I + +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 235 ILHSFIARADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 277


>gi|209520390|ref|ZP_03269153.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499175|gb|EDZ99267.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 304

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVILGRRIDALEKRLGVKLMYRTTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  + +  + EL       SG L ++     G+  +      FL   P+
Sbjct: 61  DGAAFLERCRGLLSEWDQAENELSAGRRAVSGHLIVSAPAAFGRKHVAPLAPAFLRDKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +   +P 
Sbjct: 121 LQMSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPDYFRRHGKPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           ++++L  HN + F     +  ++  W    +  +   R+   L  N    + ++   G G
Sbjct: 180 TLEDLPAHNCLAFNL---QGGQNRGWYFRRNGKLATVRVGGSLDCNDGELLHRWVSEGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + ++       L  ++++   P + +   YP+      +++ F +++
Sbjct: 237 LGWRSTWEIQQQLARGELETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|28897466|ref|NP_797071.1| DNA-binding transcriptional activator GcvA [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28805678|dbj|BAC58955.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 306

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNSLRVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLSLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  +     ++ E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTSIAEATDKVLERSE--KGALTISLPPSFAIQWLVPRLADFNAQEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +   S+ 
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPSLLLGNKPLESLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+   A      G         +    ++Q    G G+AL 
Sbjct: 185 DLKLHTLLH-----DTSRKDWKQFARHYNIEGINVNHGPIFSHSTMVLQAAAHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + K   +   L+   ++V+      Y    E   + G++  FR+++   AR
Sbjct: 240 NNVLAKPEMEAGRLIAPFDEVLISKNAFYVVCHEQQADMGRIATFRDWMLATAR 293


>gi|16129289|ref|NP_415844.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108176|ref|AP_001956.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160839|ref|YP_001458157.1| LysR family transcriptional regulator [Escherichia coli HS]
 gi|170081007|ref|YP_001730327.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|193062709|ref|ZP_03043803.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194426053|ref|ZP_03058609.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|238900563|ref|YP_002926359.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|253773669|ref|YP_003036500.1| LysR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161408|ref|YP_003044516.1| putative DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|256022957|ref|ZP_05436822.1| predicted DNA-binding transcriptional regulator [Escherichia sp.
           4_1_40B]
 gi|260843677|ref|YP_003221455.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O103:H2 str. 12009]
 gi|297517004|ref|ZP_06935390.1| LysR family transcriptional regulator [Escherichia coli OP50]
 gi|300927844|ref|ZP_07143406.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|300948415|ref|ZP_07162518.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300954582|ref|ZP_07167028.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|301022702|ref|ZP_07186552.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|301647169|ref|ZP_07246990.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|307137971|ref|ZP_07497327.1| LysR family transcriptional regulator [Escherichia coli H736]
 gi|331641895|ref|ZP_08343030.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
 gi|2495399|sp|P77333|YCJZ_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator
           ycjZ
 gi|1742185|dbj|BAA14921.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|1787589|gb|AAC74410.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|157066519|gb|ABV05774.1| transcriptional regulator, LysR family [Escherichia coli HS]
 gi|169888842|gb|ACB02549.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|192931831|gb|EDV84431.1| transcriptional regulator, LysR family [Escherichia coli E22]
 gi|194416108|gb|EDX32374.1| transcriptional regulator, LysR family [Escherichia coli B171]
 gi|238862305|gb|ACR64303.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|242377106|emb|CAQ31833.1| putative transcriptional regulator LysR-type [Escherichia coli
           BL21(DE3)]
 gi|253324713|gb|ACT29315.1| transcriptional regulator, LysR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973309|gb|ACT38980.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253977523|gb|ACT43193.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|257758824|dbj|BAI30321.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O103:H2 str. 12009]
 gi|260449539|gb|ACX39961.1| transcriptional regulator, LysR family [Escherichia coli DH1]
 gi|299881147|gb|EFI89358.1| LysR substrate binding domain protein [Escherichia coli MS 196-1]
 gi|300318492|gb|EFJ68276.1| LysR substrate binding domain protein [Escherichia coli MS 175-1]
 gi|300452090|gb|EFK15710.1| LysR substrate binding domain protein [Escherichia coli MS 116-1]
 gi|300464129|gb|EFK27622.1| LysR substrate binding domain protein [Escherichia coli MS 187-1]
 gi|301074655|gb|EFK89461.1| LysR substrate binding domain protein [Escherichia coli MS 146-1]
 gi|315135969|dbj|BAJ43128.1| putative DNA-binding transcriptional regulator [Escherichia coli
           DH1]
 gi|315619412|gb|EFU99956.1| uncharacterized HTH-type transcriptional regulator ycjZ
           [Escherichia coli 3431]
 gi|323162459|gb|EFZ48311.1| hypothetical protein ECE128010_1360 [Escherichia coli E128010]
 gi|323942276|gb|EGB38447.1| LysR substrate binding domain-containing protein [Escherichia coli
           E482]
 gi|323973562|gb|EGB68747.1| LysR substrate binding domain-containing protein [Escherichia coli
           TA007]
 gi|331038693|gb|EGI10913.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H736]
 gi|332342929|gb|AEE56263.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 299

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|257094002|ref|YP_003167643.1| LysR family transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046526|gb|ACV35714.1| transcriptional regulator, LysR family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 306

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 128/297 (43%), Gaps = 12/297 (4%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   GS   AA +L  +++ IS+Q+  LE   G++LF R  R L LT  G   ++  
Sbjct: 10  FVRVVEIGSMAAAARRLDCTRAQISKQVGELEKAFGVRLFERTTRKLRLTPAGEIFYQHA 69

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 ++   + ++ S+  P G LRI+ ++  G+  +   L      YP ++ +L+L +
Sbjct: 70  LRALAVVDGADLAVRISTEVPCGVLRISASLTFGRLYIAPLLPRLAERYPQLECELLLSD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             +D+  D  D A+RL K     + + R L  +     AAP YL     P +  EL  H 
Sbjct: 130 DLVDLIDDRIDLALRLTKTPPEDA-VARPLTLVKRLICAAPAYLDTHGRPATPAELSSHQ 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
              F    P     +  L         P  S  ++N+   I+   + G G+A+LP Y+ +
Sbjct: 189 C--FDFPHPYGNGRWRLLDRQGEETAVPVSSRFRINNVDCILDALLAGHGMAILPTYLCR 246

Query: 251 ---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRN---FIFLKARDWK 298
               +  L  +++D    S     VY CY  +     K++   +    +FL    W+
Sbjct: 247 SYLADGRLHAVLDDYEPLSSFGRHVYACYTPSRVRLAKVRVVLDELEALFLPVPPWE 303


>gi|153008792|ref|YP_001370007.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560680|gb|ABS14178.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 310

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    S+   S    +AT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAMASAQSTS-SFSVATLPTFGTRWLMPRISDFIEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +   +   D      D AI   +P+ + +     L +  +   A+P  LK  R P + 
Sbjct: 129 INVASRSGVFDFEEQPFDLAIHYGQPVWAHA-TCTFLCSEVIVPVASPALLKA-RHPSAP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+   L+          + F       R          + + +  ++   + G G AL
Sbjct: 187 EELENEPLLHLATRPKMWAQWFESCGVEGRSA----YRGHRFDQFSMVIGAALAGLGFAL 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++    +  LV + E  +      Y   PE        + F  +I  + 
Sbjct: 243 LPLYLIEQELLSGELVMLFEKPMRTENEYYLVVPEGKLENPLTQVFCQWIAGQV 296


>gi|86145768|ref|ZP_01064097.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85836467|gb|EAQ54596.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 310

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 131/298 (43%), Gaps = 8/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L+V   VA   S T AA  L +  ++ S  +  +E  +G +LF R  R L L+  
Sbjct: 1   MLLEDLQVILKVAEFRSITAAATNLDMRTATASAAVKRVEAALGAELFVRTTRHLRLSSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    LE  ++ ++E      G++RIA + DLG+NL+   L EFLL YP  
Sbjct: 61  GERYLPECEQALKILEQAKLSMREELGILDGEIRIALSSDLGRNLITPWLDEFLLEYPKA 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++  + + +ID   D  D A+R   P   +++   K+  +     AAP YL     P  
Sbjct: 121 SLRTSISDSNIDFYRDSVDMALRYGSP-TDANMYGFKICDVPRILCAAPEYLAEMGTPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             +L +HN + +   +   ++D  W+    +   + ++   +  N    + ++CV G G+
Sbjct: 180 PSDLAQHNGLLY--QLHDMLQD-EWVFNDGKQDHKVKLKGNRASNDADLVRRWCVAGKGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+     +  +     +V++M +       ++   P     T  ++  R+    K  +
Sbjct: 237 AIKSCLDMSKHLLSGEVVKVMPEFKPTPTELWLVCPSRQSITPTVRLLRDLFREKTAE 294


>gi|332306819|ref|YP_004434670.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174148|gb|AEE23402.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 303

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 130/294 (44%), Gaps = 8/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   LR+F   A+ GS +  A ++ LS + +S  +  LE ++G+ LF R  R L LT++G
Sbjct: 3   NIQDLRLFCETAQQGSLSACARKMDLSPAVVSASLKRLEADLGVLLFIRSTRNLRLTQKG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R  +     L+    E+     + SG ++++   D+G+NLL   L  F+  +P ++
Sbjct: 63  EQFLRHCTNALTILDEATTEIHSQDAELSGVIQLSAPSDMGRNLLLPWLDSFMEAHPRVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLS 182
           ++L L +   D+     D A+R  KP + S  I   +   ++    A+P Y++    P S
Sbjct: 123 VRLQLSDSPADLYSQPVDLALRYGKP-KDSGFIAIPIAAQNVPVLCASPAYIEQFGTPSS 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +Q L +HN +  G             +  ++ +        Q        ++ + G GIA
Sbjct: 182 LQALTQHNCLCHGHNDTLHTRWT--FSKENKSVSIDVTGNRQCKDGDITRKWAIAGKGIA 239

Query: 243 LLPDY-IVKD--NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 I++D  +  LV + ++     +F +     E    +  + AF+  +  
Sbjct: 240 RKSKLDIIQDLIHGRLVELDIDGWHGETFPLNLICAERRLLSPTINAFKQHLIE 293


>gi|218676880|ref|YP_002395699.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
 gi|218325148|emb|CAV27031.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 310

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 131/298 (43%), Gaps = 8/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L+V   VA   S T AA  L +  ++ S  +  +E  +G +LF R  R L L+  
Sbjct: 1   MLLEDLQVILKVAEFRSITAAATNLDMRTATASAAVKRVEAALGAELFVRTTRHLRLSSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    LE  ++ ++E      G++RIA + DLG+NL+   L EFLL YP  
Sbjct: 61  GERYLPECEQALKILEQAKLSMREELGILDGEIRIALSSDLGRNLITPWLDEFLLEYPKA 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++  + + +ID   D  D A+R   P   +++   K+  +     AAP YL     P  
Sbjct: 121 SLRTSISDSNIDFYRDSVDMALRYGSP-TDANMYGFKICDVPRILCAAPEYLAEMGTPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             +L +HN + +   +   ++D  W+    +   + ++   +  N    + ++CV G G+
Sbjct: 180 PSDLAQHNGLLY--QLHDMLQD-EWVFNDGKQDHKVKLKGNRASNDADLVRRWCVAGKGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+     +  +     +V++M +       ++   P     T  ++  R+    K  +
Sbjct: 237 AIKSCLDMSKHLLSGEVVKVMPEFKPTPTELWLVCPSRQSITPTVRLLRDLFREKTAE 294


>gi|265995700|ref|ZP_06108257.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|262766984|gb|EEZ12602.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
          Length = 293

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 7/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGPTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENSTPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L++H LI + + +       N        I        +V+S L  ++    G+GI 
Sbjct: 180 PEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 235 ILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 277


>gi|207738839|ref|YP_002257232.1| hypothetical protein RSIPO_03530 [Ralstonia solanacearum IPO1609]
 gi|206592207|emb|CAQ59113.1| hypothetical protein RSIPO_03530 [Ralstonia solanacearum IPO1609]
          Length = 304

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 123/299 (41%), Gaps = 13/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH---ARGLTLTE 61
            + LR F    R  SF+ AA +L+++ +++ + +  LE  +G  LF+R       L  TE
Sbjct: 7   LNALRAFEASTRHQSFSAAAAELNVTPAAVGQLVRSLEASLGTPLFHRSSGGRARLVATE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + +L      L+E+S   SG L +  +       L   +  F   +PD
Sbjct: 67  AAERALPDIRAGFDRLSLGLARLKEASA--SGVLTVTVSPAFAAKWLLPRIDRFQAAWPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L    K +D      D  +R         L+  KL+   ++   +P  L+  R   
Sbjct: 125 TDVRLDTHLKPVDFIAQGVDIGVRYGAG-SWPGLVAEKLMGEEIYPVCSPGLLRQKRRLR 183

Query: 182 SIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  +L K  LI     D     +    WL  V       +   +++N+  +++Q  + G 
Sbjct: 184 NPADLAKETLIHDLSVDGHDGFVSWDVWLERVGVTTVATKRG-MRINNSAAVLQAAIDGH 242

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL    + +D+     LVR+  +V  T +   Y  Y        KL AFR+++  +A
Sbjct: 243 GVALARSVMARDDLAAGRLVRLFPEVEFTSALAYYVVYRAECAGLPKLAAFRDWLVSEA 301


>gi|15799981|ref|NP_285993.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 EDL933]
 gi|168749122|ref|ZP_02774144.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168755824|ref|ZP_02780831.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168761915|ref|ZP_02786922.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168769625|ref|ZP_02794632.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168775429|ref|ZP_02800436.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168782622|ref|ZP_02807629.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168788542|ref|ZP_02813549.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|168799810|ref|ZP_02824817.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|195937757|ref|ZP_03083139.1| hypothetical protein EscherichcoliO157_15139 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807457|ref|ZP_03249794.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208816266|ref|ZP_03257445.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208822937|ref|ZP_03263255.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209400952|ref|YP_002268898.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217326312|ref|ZP_03442396.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254791435|ref|YP_003076272.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223631|ref|ZP_05937912.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255950|ref|ZP_05948483.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281170|ref|YP_003497988.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. CB9615]
 gi|12513056|gb|AAG54601.1|AE005204_11 putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|187769101|gb|EDU32945.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188016483|gb|EDU54605.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|188999842|gb|EDU68828.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189356865|gb|EDU75284.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189361291|gb|EDU79710.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189367676|gb|EDU86092.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189371620|gb|EDU90036.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|189377841|gb|EDU96257.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|208727258|gb|EDZ76859.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208732914|gb|EDZ81602.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208737130|gb|EDZ84814.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209162352|gb|ACI39785.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209745234|gb|ACI70924.1| hypothetical protein ECs0305 [Escherichia coli]
 gi|209745236|gb|ACI70925.1| hypothetical protein ECs0305 [Escherichia coli]
 gi|209745238|gb|ACI70926.1| hypothetical protein ECs0305 [Escherichia coli]
 gi|209745240|gb|ACI70927.1| hypothetical protein ECs0305 [Escherichia coli]
 gi|209745242|gb|ACI70928.1| hypothetical protein ECs0305 [Escherichia coli]
 gi|217322533|gb|EEC30957.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254590835|gb|ACT70196.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|290761043|gb|ADD55004.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. CB9615]
 gi|320192404|gb|EFW67048.1| Transcriptional regulator [Escherichia coli O157:H7 str. EC1212]
 gi|320638549|gb|EFX08257.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. G5101]
 gi|320644010|gb|EFX13090.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H- str. 493-89]
 gi|320649292|gb|EFX17843.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H- str. H 2687]
 gi|320662432|gb|EFX29821.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665358|gb|EFX32445.1| putative LysR-like transcriptional regulator [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326338840|gb|EGD62658.1| Transcriptional regulator [Escherichia coli O157:H7 str. 1125]
 gi|326343456|gb|EGD67220.1| Transcriptional regulator [Escherichia coli O157:H7 str. 1044]
          Length = 299

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 124/301 (41%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA   +F+ AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPIFIAVAEESNFSKAAARLGVTRSAVSQGIRRLEDAFGTMLVMRTTRSVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +LH+  S     +E    E+    V P G LRIA T    + L    +  F    P
Sbjct: 61  EAGERLHKSLSLPLSGIEAAFEEMVSDHV-PRGLLRIAVTSIAEEFLSGPLIASFAAANP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +++ +++ DI     D  +RL + I+   +             A+P YL     P
Sbjct: 120 AVTLDIVVTDEEFDIVAAGYDAGVRLGEVIEKDMIAVPLTGRQREMVVASPSYLAANSTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +EL  H  I +          +       R         +  N    +++  + G G
Sbjct: 180 VHPRELVNHKCIGWRQSPEVAPYRWP-FEENGRAFDLAIEPQITTNDLRLMLRLALAGGG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I +      +   ++  LV +++D +      Y  +P+      KL+A  + +    ++W
Sbjct: 239 ITIATQETFRPYIESGKLVSLLDDFLPQFPGFYLYFPQRRNIAPKLRALIDHV----KEW 294

Query: 298 K 298
           +
Sbjct: 295 R 295


>gi|269965065|ref|ZP_06179230.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|269830368|gb|EEZ84593.1| transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 306

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNSLRVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLSLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  +     ++ E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTSIAEATDKVLERSE--KGALTISLPPSFAIQWLVPRLADFNAQEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +   S+ 
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPSLLLGNKPLESLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+   A      G         +    ++Q    G G+AL 
Sbjct: 185 DLKLHTLLH-----DTSRKDWKQFARHYNIEGINVNHGPIFSHSTMVLQAAAHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + K   +   L+   ++V+      Y    E   + G++  FR+++   AR
Sbjct: 240 NNVLAKPEMEAGRLIAPFDEVLISKNAFYVVCHEQQADMGRIATFRDWMLATAR 293


>gi|73539649|ref|YP_300016.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122986|gb|AAZ65172.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 325

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 128/299 (42%), Gaps = 12/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ L    V+ + GSF+ AA +L +S++S+S+ I+ LE   GI L  R  R  TLT+ G 
Sbjct: 10  WEHLHWLVVLHQQGSFSKAAARLGVSKASMSQHIADLEKAAGIMLVQRTTRSATLTDAGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L       + ++ T    +++ +  P G LR+   +   +  L   L EFL  YP IQ+
Sbjct: 70  QLVDSMRGAFEQIATGYANVRDLAGAPRGFLRVTAPVAFSRQQLVPRLPEFLRRYPQIQV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L + ++   ++ +  D A+R       +  +   L        A+  YL     P S +
Sbjct: 130 ELDMSDRLRPLAQEGFDIAVRHTSAPPETH-VAWTLAATRTVLVASRSYLGTRSSPESPE 188

Query: 185 ELDKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L  H  + +          F     +  AT   P+  P    L VN+  ++    + G 
Sbjct: 189 ALVDHACLHYPRRQGTATWTFVPEAPDEGATHADPVTVPVAGPLAVNNSEALRDAAIEGL 248

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFL 292
           GIALLPD+  +   ++  LV ++            +Y   P +   +   + F  ++  
Sbjct: 249 GIALLPDFSAQSALESGRLVELLPQWRATGAFGDWLYAIRPYSAHASRVSQVFVEYLRE 307


>gi|269966574|ref|ZP_06180656.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269828837|gb|EEZ83089.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 308

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   AR  SFT AA++L+++Q +ISRQI  LE  +G  +F R  R + LT  G 
Sbjct: 9   LNSLVAFEASARHLSFTLAADELNVTQGAISRQIRQLEEYLGKAMFTRANRSINLTPTGL 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++  S+    L+  QI  +    +   K+ +ATT  +    L   + +F   + DI I
Sbjct: 69  QYYQAVSQ--SLLDIAQITGEVKKWQGEQKITVATTNAMAALWLLPKVAQFQNEHDDIDI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++  +  +D+     D A+   +   +   +   L +  +    +P YL+   +P   +
Sbjct: 127 RILASDNVLDLRRLDCDLALFYCRTPPAEMDVT-TLFSEEVFPVCSPLYLEKIGQPSEPE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E+    L+   +     +    W A+V  P   PR + + +N+Y  ++Q  + G GIAL 
Sbjct: 186 EIFNKTLLYLEESQRDWVNWEQWFASVGLPNISPR-NRMNINNYPMLLQAAINGQGIALA 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKN-TGKLKAFRNFIFLKARD 296
              +V D   +  LVR +E V++         P+        +K FR ++  +  D
Sbjct: 245 WGSLVDDYLQSGALVRPVEHVLSTPSNFSMLEPKNRGLIPASVKRFREWLLQQLPD 300


>gi|254418113|ref|ZP_05031837.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
 gi|196184290|gb|EDX79266.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
          Length = 300

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 137/295 (46%), Gaps = 8/295 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D    L  F      GS+T AA  L +S S++S+ +  LE  +G+ LF R  R LTL
Sbjct: 5   MGLDRLTGLIAFARAGSLGSYTAAARSLSISPSAVSKSVQRLEQRLGVSLFTRTTRSLTL 64

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G +LH    ++    E  +     +  +PSG LRIA ++ LG +++   L EF   Y
Sbjct: 65  TPEGRELHGRALKLLQDAEEIEQVAMTARSEPSGVLRIAASLPLGIHVIAPALPEFRRRY 124

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L L ++ +DI     D A+R+ + +  S L+ R+L  + + A+A+P YL +   
Sbjct: 125 PKVTVDLRLSDQIVDIVDLGVDVAVRIGE-LADSRLLSRRLAPMRLGAFASPAYLASRGA 183

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P+    L +H+ +          + F W   + +R I     S + V+   +++   V G
Sbjct: 184 PIHPDALAEHDTVNL--RYQSSGQVFRWPFKIGEREIEIVPPSGIIVDVSEAVLATLVAG 241

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+ L   ++         LV I+ +       +   +PE  +    ++AF   +
Sbjct: 242 GGVGLSATFVAAPYVARGELVPILTEYAVERHNITALWPEGRRANPAVRAFLTLL 296


>gi|262376086|ref|ZP_06069317.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145]
 gi|262309180|gb|EEY90312.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145]
          Length = 309

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 123/285 (43%), Gaps = 7/285 (2%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE ++ + L  R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKNSFSGAARELGITTSAVSQQIRSLEHDMEVVLLNRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  ++ + E      G+LRI +  +L  N +   L  ++  +  
Sbjct: 62  AGQAFFHSCQEMLSAAERGKVRINELRDDLVGELRIVSLPELCANHVIPALSHWIAAHRG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L  +N ++D+     D A+R  +     +L    L+ I     A P Y+       
Sbjct: 122 LAVHLETNNHEVDLLDGRVDIALRFEQKNDEHNLQVVPLMQIEQILVATPSYINQSTIIS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H ++    L       F  + T ++   E + S    N+ L     C+ G+GI
Sbjct: 182 KPDDLKNHEVLPLTHLKNHQYYHFQHVNTAEKAEFELK-SRFSTNNGLVAKSMCLQGNGI 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           A +     K +     LV ++ +   PS T+Y   P+  +   K+
Sbjct: 241 AKVLYLDAKKDLLNGTLVEVLPEWRLPSITLYAVIPKREQQPTKI 285


>gi|152996028|ref|YP_001340863.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836952|gb|ABR70928.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 315

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 133/294 (45%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ +  FY+ A  G +T A     +++S +SR+++ LE  +GI+L +R++R  +LT+ 
Sbjct: 1   MDFNDIYYFYLTAEHGGYTAAERVSGITKSLLSRRVAQLEERLGIQLIHRNSRQFSLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +  + ++    +      PSG +R++  + L Q+     L EF+  +P +
Sbjct: 61  GVQLYEGAINMVAEGQSAYESVALLQSVPSGVVRVSCPVLLAQHHFTFFLPEFMKSFPQV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + L + ++++ I  +  D  +R R  + Q + ++ +KL T  M   A+P ++K    P 
Sbjct: 121 SVHLDVTDREVQILEERVDIVLRTRGDLAQEAGIVSKKLATSKMILVASPDFIKEYGMPT 180

Query: 182 SIQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L K   +T         +  +  L         P    L   +    ++  V G G
Sbjct: 181 HPSQLTKMPTLTEMAGKQDGTLYQWELLGPDGAVCSVPHHPRLVCLNRWLQLKSAVQGVG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + L+P+ +  D+    NL+ ++    T    V   Y      T  ++ F + + 
Sbjct: 241 VGLIPEIVASDDLAKGNLLHVLPSWTTNVSIVQAVYSYRKSMTPAVRVFLDSLL 294


>gi|330821997|ref|YP_004350859.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373992|gb|AEA65347.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 314

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 127/292 (43%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + VF  V   GSFT  A  L  +  +ISR +S LE  +  +L +R  R LT+T+
Sbjct: 1   MDKFHNMSVFAKVVEMGSFTAVANHLDTTVGNISRAVSTLEEALNTRLLHRSTRRLTITD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +  ++ +   LE  + E +++ ++P G LR+     LG++L+   +  +   +P 
Sbjct: 61  AGRRFYERSAAILADLEHAEAEARDALLEPRGLLRVHCVPGLGRDLVTRAVLAYREAFPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L  +  ++  D  D +I + + +  S+ + +++ T H    A+P YL     P 
Sbjct: 121 VTVDLRLSQRMPNLLEDQLDISIVIARALPDSAYVSQQIGTSHCVLAASPAYLAAHPAPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  +  G  +    + +         +  P      VN   ++      G+GI
Sbjct: 181 RPEDLVDHRCVLLG-TVDYAPDVWQLEGAGGETVFRPTGPHFSVNDMEAMGTALEAGAGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LL  Y   D      L R++    T    V+  Y        ++K F  F+
Sbjct: 240 GLLAGYAALDALRAGRLQRVLPGYHTWRRKVFVMYSSRQFVDARIKRFVEFV 291


>gi|299065854|emb|CBJ37033.1| putative transcription regulator protein, LysR family [Ralstonia
           solanacearum CMR15]
          Length = 323

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 123/294 (41%), Gaps = 7/294 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +    V+A + SFT AA++L +S++++S++I+ LE   G+ L  R  R + LTE G  L
Sbjct: 17  HIHSLTVLATTNSFTAAAQRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTEAGQTL 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              T + Y  +      +++ + +P G +R+   + LG+  +   L  FL  YP ++I+L
Sbjct: 77  VDSTRDAYETIAVHFTRVKDLAGEPRGLVRVTVPVALGRQQIVPLLPAFLQRYPGVRIEL 136

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++   ++ +  D AIR       +  +   L        A+  YL     P   Q L
Sbjct: 137 DLSDRLHSLTQEGFDLAIRHVTAAPETH-VAWTLCRTQAVLVASRDYLARRGTPEHPQAL 195

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ + +          F         +  P   C   N+  ++ +  + G GIALLPD
Sbjct: 196 VDHDCLYYLRGNEPAAWSFEARGRKRGRVSVPIRGCFAANNSEAMREAALGGLGIALLPD 255

Query: 247 YIVKDN---PNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  + +     LV ++E           +    P +      + A    +  + 
Sbjct: 256 FSAQHDIDAGRLVPVLEGWRPVGVFGEQILAIRPYSPVVPSAVSALVQHLRAQL 309


>gi|260565678|ref|ZP_05836161.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265991861|ref|ZP_06104418.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|265999312|ref|ZP_06111641.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260151051|gb|EEW86146.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|263002817|gb|EEZ15220.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093197|gb|EEZ17294.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326409837|gb|ADZ66902.1| LysR family transcriptional regulator [Brucella melitensis M28]
 gi|326539552|gb|ADZ87767.1| transcriptional regulator, LysR family protein [Brucella melitensis
           M5-90]
          Length = 293

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 7/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENSTPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L++H LI + + +       N        I        +V+S L  ++    G+GI 
Sbjct: 180 PEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 235 ILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 277


>gi|209548369|ref|YP_002280286.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534125|gb|ACI54060.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 306

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             +D++R F  VA  G+ +  A +L + QS+++R ++ LE  VG+ L  R  R +TLTE+
Sbjct: 6   LSFDRMRTFVRVAERGNLSMVARELDVGQSTVTRHLNKLEEAVGVPLLSRTTRRVTLTEE 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+ +    ++   +E    E +++   P+G +R++ T  LG   +   + EF   +PDI
Sbjct: 66  GSRYYTNCLQILRLVEQAAEEARDARQAPAGGVRLSCTAALGVMHVTRMIFEFQDRHPDI 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ ID+  +  D A+RL  P+  S++    +         AP YL     P  
Sbjct: 126 RVDLNLTDERIDLVREAVDVALRLG-PLADSAMKLHAIGESQRLLVGAPAYLSARGRPQR 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L ++  +   ++        +  A     +  P    L+V+  L+  +    G GI 
Sbjct: 185 PADLSRYETVVMSNVAGSNQLLLS--APDGTSLMIPVSGRLRVDHGLAAREALAAGRGIG 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               ++V    D+  L  ++ D       V            +++   +F+  + 
Sbjct: 243 PTHLWLVHDLLDDGRLEIVLGDYRPSPVPVSLLIVPERAAIARVRLLVDFLAAEV 297


>gi|161524570|ref|YP_001579582.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350674|ref|YP_001946302.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221215110|ref|ZP_03588077.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160341999|gb|ABX15085.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189334696|dbj|BAG43766.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221165046|gb|EED97525.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 303

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL   P+
Sbjct: 61  EGAAFLERCRGLLSEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLADKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 MQLSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPDYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L KHN + F     +  ++  W       I   R++  L  N    + ++   G G
Sbjct: 180 SLDDLLKHNCLAFNL---QGGQNRGWYFQRHGKIVTMRVTGNLDCNDGELLHRWVAEGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + +    +   L  ++++   P + +   YP+      +++ F +++
Sbjct: 237 LGWRSTWEIAAQLETGELETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|218508759|ref|ZP_03506637.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 306

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 133/293 (45%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++R F  VA  G+ +  A++L + QS+++R ++ LE  VG+ L  R  R +TLTE+GS
Sbjct: 8   FDRMRTFVRVAERGNLSMVAKELGIGQSTVTRHLNELEEAVGVALLSRTTRRVTLTEEGS 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++   +E    E + +   P+G +R++ T  LG   +   + +F  L+PDI++
Sbjct: 68  RYYTNCLQILRLVEQAAEEARAARQAPAGAVRLSCTAALGVMHVTRMIFDFQDLHPDIRV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ ID+  +  D A+RL  P+  SS+    L         AP YL     P    
Sbjct: 128 DLNLTDERIDLVREGVDVALRLG-PLADSSMKLHALGESQRLLVGAPAYLSARGRPERPA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++  I   ++        +  A+    +  P    L+V+  L+  +    G GI   
Sbjct: 187 DLSRYETIVMSNVAGSNQLLLS--ASDGTSLVVPVSGRLRVDHGLAAREALAAGRGIGPT 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             ++V    D+  L  ++ D       V            +++   +F+  + 
Sbjct: 245 HLWLVHDLLDDGRLEVVLGDYRPSPVPVSLLIVPERAAIARVRLLVDFLAAEV 297


>gi|329118742|ref|ZP_08247442.1| LysR family transcriptional regulator [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465177|gb|EGF11462.1| LysR family transcriptional regulator [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 300

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 111/294 (37%), Gaps = 8/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + LRVF  +A +GSFT AA QL +SQS++S  +  LE  + IKL  R  R ++ T
Sbjct: 5   MPQNLNDLRVFLRIADTGSFTAAAAQLGVSQSALSYTVRQLEERLKIKLLERTTRSVSTT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L +  + +  +L+     L +      G L++          L     EF+  YP
Sbjct: 65  VAGEALRQQIAPLLAELDAKIENLNQFRDTLGGSLKVTGNEHAFAVALWDKFAEFMRRYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI ++L   N+  DI  +  D  IRL + ++   +  R    + M   A   +      P
Sbjct: 125 DIALELDSSNRFADIVAERFDAGIRLGQFVEKDMIALRVSPDMQMAVVARADFAAGITAP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLA---TVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            +  +L     I     +P       W        +P+          N    + Q    
Sbjct: 185 QTPADLAALPCIAL--RLPSLANTLAWEFADPQSGKPLKIQPNGQFVCNRNALVKQAVNA 242

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G G+A LP  +            ++ D        Y  YP    ++   +A   
Sbjct: 243 GLGLAWLPRDMAAAELARGEWTELLPDWAMRYEGYYLYYPSRRADSAVFRALAE 296


>gi|293606896|ref|ZP_06689244.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292814748|gb|EFF73881.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 289

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD  R+F  + R G+   AA  L + Q++  R+++ LE+ +  +LF R   G   T  
Sbjct: 1   MDWDNARIFLAIYRVGTLRGAAALLQIDQATAGRRLAALESSLDARLFLRTPGGYVPTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    +  Q ++Q    + SG +R+A +  +    +   ++     +PDI
Sbjct: 61  GELAFAAAERMEQAADQLQRQMQGLDHRLSGVVRVAASETVASYFVMEAVRRVQAQHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    +  +++   AD AIR  KP  +  LIQR L    +  YA+  YL    EP  
Sbjct: 121 RVVLSASIQISNLTRREADLAIRNLKP-DNPDLIQRHLARKEVGLYASRGYLAAHGEPRP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H L+T+   +     D         P G  RI  +++NS + I+     G GI 
Sbjct: 180 GTAFAGHTLVTYQQAVLPGWSD----TFCGEPTGNGRI-AIELNSGMMILAAVAAGLGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP ++  D P+LVRI        + ++      L  T +++A  + I  
Sbjct: 235 ELPTHMAPDYPDLVRIWPG-RAEPYDLWLVMHGDLNRTARVRAVADAIVE 283


>gi|326315161|ref|YP_004232833.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323371997|gb|ADX44266.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 298

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AA QL  + S +SR ++ LE ++   L  R  R + LT
Sbjct: 1   MKTTLEELQAFAAVVDGGSVTAAAAQLDQTASGVSRALARLEKKLDTTLLRRTTRRIELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   L+  +  +     +P+G+LR+        +++   +  F   YP
Sbjct: 61  EEGQAFLVRARAILAALDEAEEHMAARRRQPAGRLRVNAATPFMLHVVAPLVPAFRSAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D ++ID+     D AIR+   ++ S+L  R L +  +   A+P Y+     P
Sbjct: 121 QIALELDTDERNIDLLERRTDVAIRIGA-LRDSTLHARPLGSSRLRVLASPAYVATHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S   L +H L+ F       +    W          P    +  +S  ++ Q  + G+G
Sbjct: 180 KSAAALAQHTLLGFTQPEALNL----WPLRGPHGDAWPATPDIAASSGETLRQLALEGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  L D++    ++  +LV+++  D       +   Y    +   ++  F +F+  + 
Sbjct: 236 IVCLSDFMTARDRERGDLVQLLARDTADVRQPISAVYYRNTQLASRIACFLDFLAARL 293


>gi|187732113|ref|YP_001880166.1| LysR family transcriptional regulator [Shigella boydii CDC 3083-94]
 gi|187429105|gb|ACD08379.1| transcriptional regulator, LysR family [Shigella boydii CDC
           3083-94]
          Length = 299

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 119/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G   
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|320657001|gb|EFX24836.1| putative LysR-like transcriptional regulator [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 299

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 125/301 (41%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA   +F+ AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPIFIAVAEESNFSKAAARLGVTRSAVSQGIRRLEDAFGTMLVMRTTRSVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +LH+  S     +ET   E+    V P G LRIA T    + L    +  F    P
Sbjct: 61  EAGERLHKSLSLPLSGIETAFEEMVSDHV-PRGLLRIAVTSIAEEFLSGPLIASFAAANP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +++ +++ DI     D  +RL + I+   +             A+P YL     P
Sbjct: 120 AVTLDIVVTDEEFDIVAAGYDAGVRLGEVIEKDMIAVPLTGRQREMVVASPSYLAANSTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +EL  H  I +          +       R         +  N    +++  + G G
Sbjct: 180 VHPRELVNHKCIGWRQSPEVAPYRWP-FEENGRAFDLAIEPQITTNDLRLMLRLALAGGG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I +      +   ++  LV +++D +      Y  +P+      KL+A  + +    ++W
Sbjct: 239 ITIATQETFRPYIESGKLVSLLDDFLPQFPGFYLYFPQRRNIAPKLRALIDHV----KEW 294

Query: 298 K 298
           +
Sbjct: 295 R 295


>gi|159186669|ref|NP_396483.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141729|gb|AAK90924.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 317

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 135/298 (45%), Gaps = 8/298 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D +D + V   V  +GS +  A +LH   +++SR+++ LE  +G +L  R  RGLTLT
Sbjct: 19  KMDRFDAMSVLLAVVDAGSLSAGARRLHAPLATVSRKVADLEKHLGARLVLRTRRGLTLT 78

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G      +  +   L+  + E+  +     G L +   I  G+  +     EFL  + 
Sbjct: 79  DEGRNYVAASRRILEALDVAEEEVSGAHGALRGGLHMTAPIAFGERHVLPIALEFLREHQ 138

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L L ++ I ++ ++ D A+R+   +  S+LI  ++  +     A+P YL     P
Sbjct: 139 EIDLRLTLADRQISLADEHVDVALRIGH-LADSALIATRVGAVRRVVCASPDYLACRGVP 197

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L   +L +H+ I+F         +  +   V     EPR +   VN+  + ++  V G G
Sbjct: 198 LQPDDLARHDGISFQGFA--TAPEVRYRRDVTAFNVEPR-ARFAVNTTEAAIRAAVSGIG 254

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  +  Y V D   +  L  ++ +       V   +        K++ F N+I  + R
Sbjct: 255 IIRVLSYQVADQIKSGALQEVLSEFAPEPLPVNVVHGPVDPMPMKVRRFLNWITPRLR 312


>gi|264679851|ref|YP_003279760.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210366|gb|ACY34464.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 318

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 130/289 (44%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F  VA+ GSF+ AA    +S S++S+ ++ LET +G++L  R  R L LT +G +L
Sbjct: 14  ELQTFVQVAQQGSFSAAARLREISPSAVSKIVARLETRLGVQLLRRSTRRLELTAEGEQL 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++       +  +     +P+G +RI  +   G  LL   +   +  +P +Q+ L
Sbjct: 74  LEQGRQLLADWLALESSVT-RQGQPTGVVRINASSSTGNRLLVPLVGPLMRTWPGLQLDL 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+    AD A+R  + + SS ++ RKL        A+P YL+   +P    EL
Sbjct: 133 SFTDHVVDLIAARADIALRWGE-LPSSDMVARKLGHTRQVIVASPDYLQRFGKPAHPDEL 191

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +  G   P+ +  +       + +       L+VN   ++      G+G+A L  
Sbjct: 192 SGH--VRIGWNYPRAIPHWP-FVVAGKAVTVSMGEVLRVNDGEAMANLAKAGAGLARLSL 248

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFI 290
           Y   ++     L  ++E+        ++  Y  +  +   + +A  +F+
Sbjct: 249 YHAWEDLHAGRLQVLLEEFNPGDLQPIHAVYVGKPGQLPVRTRAVLDFL 297


>gi|149189711|ref|ZP_01867993.1| putative transcriptional regulator protein [Vibrio shilonii AK1]
 gi|148836523|gb|EDL53478.1| putative transcriptional regulator protein [Vibrio shilonii AK1]
          Length = 296

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 124/292 (42%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                L++F  V   GSFT AA  L L ++++SR+I+ LE  VG +LF+R  R L+LT  
Sbjct: 1   MKIADLKLFTKVVELGSFTAAANALDLPRANVSRRINELEKAVGSQLFHRTTRSLSLTNS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS      ++     +  Q  L  S    +GK+++    +   +LLQ  L EF   YP+I
Sbjct: 61  GSTYFDEITQAIELFDRAQQSLSSSRDMLTGKIKLGVLPE-TYDLLQPILFEFHDKYPEI 119

Query: 123 QIQL-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+ +  + N   +I     D AI     I  S ++ RK++       A+P Y++      
Sbjct: 120 QLDIRSISNGFNEIFQQGLDIAIH-GGTIFDSDIVARKVIQYRRALVASPEYVEEFGALE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ ELD+H  I F    P    D  W         +   + L  NS   I    + G GI
Sbjct: 179 SLDELDQHKCICF--RWPSGDIDSQWHFDSGTASVK---ASLIANSVGFIKGATIRGRGI 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + LP  +++       LV ++          +  YP+        K     +
Sbjct: 234 SFLPTMMIQRELKQGTLVPLLPQETAIKEDGWLLYPQPKTLNKASKVLIEHL 285


>gi|88797741|ref|ZP_01113329.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
 gi|88779418|gb|EAR10605.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
          Length = 309

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 137/298 (45%), Gaps = 13/298 (4%)

Query: 2   SFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           + D + L+   ++  V  SGSF  AA QL+ S+S IS Q+S LE+ + ++L  R  R LT
Sbjct: 3   TIDLNDLKLLGIYCAVVDSGSFAGAARQLNSSRSRISEQVSQLESRLEVRLLQRSTRRLT 62

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            T +G K++     +   L   +      +  PSG++ +  T D     +   L  F   
Sbjct: 63  TTTEGRKIYEQARVLPQLLSRVEA--IAGADTPSGRVSMTMTHDFAHRFILPVLPRFTQQ 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +PDI++  ILD++ +D+     D A+R+  P +  S++ R +       +A+  Y++   
Sbjct: 121 HPDIELDFILDDQPLDLVEQQIDLALRVSLP-KDDSVVARVMHQESFGLFASRKYIEQFG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P S +EL++H  +     +P+    F++    D  +        + NS   ++Q  + G
Sbjct: 180 MPRSPEELNQHRWVM-TKQVPRAALPFHF---KDHRLVIQPERAHRCNSPHLMIQMVLAG 235

Query: 239 SGIA-LLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIA LLP  +  +  +  L+ I  ++ T     Y  YP       + +   +F+   
Sbjct: 236 VGIASLLPTTVKAEVASGELIPIFPELKTDPVNYYLVYPSRRHIPLRTRTVIDFLLQA 293


>gi|313201185|ref|YP_004039843.1| LysR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312440501|gb|ADQ84607.1| transcriptional regulator, LysR family [Methylovorus sp. MP688]
          Length = 305

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 125/298 (41%), Gaps = 7/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +RVF   A + SF  AA +L +S  +++R I  LE  +G  LF+R+ R + +T
Sbjct: 1   MSNKLEMMRVFCAAADASSFKEAALRLGISPQAVTRAIKDLEYALGELLFHRNTRQIRIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKL-RIATTIDLGQNLLQGNLKEFLLLY 119
           E G        +    ++        S     G L RI   + +G+  L   L++    Y
Sbjct: 61  EFGRGFAIEARKALADVDNLFTPGAGSKPSEFGGLVRITVPMGIGRTFLLPLLRDLSSSY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P IQ  + L +   D+  +  D  IR+   ++ +  I +    +     A+P  +K   +
Sbjct: 121 PGIQFDIRLSDNIADVIDEQIDIGIRVGATLKDNGFIAKAASRVAFWNVASPALIKRTGK 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PL+ Q+L      T G + P     + W+    + + +     L  N     +Q  + G 
Sbjct: 181 PLTPQDLLHLP--TTGLIAPSSGRAWPWMFARGQQL-QINNQVLLTNDSQLEIQAVLDGI 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  +   +   +     LV ++ED     +T+Y   P+      +++   +++  + 
Sbjct: 238 GIGQIGSCMAIPHIREGRLVPLLEDYTAEPWTLYVYRPQRGPVAPRVRIVFDYLAEEL 295


>gi|251787677|ref|YP_003002398.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247536298|gb|ACT04919.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 295

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 120/290 (41%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F ++ + GSF  AA +LH+S S +S  +  LE  +G  L  R  R +T T  G
Sbjct: 5   DLPDLMAFLIIVQEGSFRKAAAKLHVSPSGLSHAMRRLEARLGFPLLLRTTRSMTPTSAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S L       + +++    EL +   + +G +RI          +   L      +P ++
Sbjct: 65  SDLAASLEIAFGEIDRELRELADRKGQVAGTVRINVHRTAADLFVLPKLSTLQERHPGVK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++D+   DI        IR  K + +  +  R           +P YL     P + 
Sbjct: 125 VELVIDDGLTDIIAAGCHAGIRNGKLLANDMVAVRISGEHRTAVVGSPAYLSRHPTPNTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I +  +  + +  + +L   D+ +       L V+    +++  + G G+A 
Sbjct: 185 EDLRDHRCIGYRFVTSRSLHRWRFLRG-DQDLLTDFEPALIVDDIQVVVRAALQGLGLAY 243

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                V ++     LV +++D  TP    Y  YP     + +L+A    +
Sbjct: 244 TLREAVAEHVENQTLVEVLKDWSTPVAADYLYYPSRGTVSPELRAVIEHL 293


>gi|17932867|emb|CAD19474.1| hypothetical protein [Enterobacter cloacae]
          Length = 295

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 141/295 (47%), Gaps = 5/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +  +F  VA +GSFT AAE + L+++ +S  I  LE E+G+ L  R  R LTLTE 
Sbjct: 2   LNLQRTAMFIAVADTGSFTAAAEAMGLTKAVVSFHIRQLEEELGVTLLLRTTRRLTLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   H+ +  +    E  Q +++ +    +G+LRI TT + G  ++   L EF  L+PD+
Sbjct: 62  GKLFHQRSVMLLRDAERLQDDVRANHAGLTGELRITTTPEYGSQVVVPLLAEFSQLHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ +  +   D+  +  D AIRL   +  S      + +  +   A P +L N     S
Sbjct: 122 RVRHVSSSLHADLIAERFDVAIRLG-TLADSRYHAALMTSFTILPVATPGWLANHPV-NS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L + + I    L          +          R   L  +S  ++M + + G G+A
Sbjct: 180 LEQLAEADWIIHERLTSPLRWQVRGVDEQPVSFEIKRAPRLYADSAQALMAFALAGCGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP+++V+   D   LV ++         +Y  YP+A     K++ F +F+ ++ 
Sbjct: 240 LLPEWLVRNALDAGELVSLLPAYTFAQQGIYAVYPDARHVPAKVRTFIDFMRVRV 294


>gi|299133670|ref|ZP_07026864.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gi|298591506|gb|EFI51707.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 307

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 123/297 (41%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +       GS + A  +L +   +ISR++S LE  +  +L  R  R L LTE
Sbjct: 1   MDRLEAMSLLVTAVEEGSLSAAGRKLGVPLPTISRKVSELEAHLKTQLLVRSTRKLGLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +   ++  + +       P G L I   +  G+  +   + +FLL +P+
Sbjct: 61  AGTAYIAACKRILEWVDEAEEQATGEYSAPRGGLAITAPVAFGRLHVLPIVNDFLLRFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++ L +K+ID+  D+ D A+R+ + +  S+++  ++  I      +P Y K    P 
Sbjct: 121 INVRMTLSDKNIDLIEDHIDMAVRIGE-LPDSTMVATRVGAIRRVVCGSPAYFKAHGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L+ H  + F    P     F        P     +  L VN+  + +   + G G+
Sbjct: 180 TPDDLNAHMCVAFAIASPASFWTFA-KKGKGPPRPVRPVCRLAVNTAEAAVDAAIAGIGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y  +       L  +++D       V+  +        K++ F  F   + R
Sbjct: 239 TRVLSYQAEQAIRQGKLKIVLQDHEPAPIPVHLMHAGQNILPLKMRHFLEFAAPRIR 295


>gi|218694903|ref|YP_002402570.1| putative nucleic acid-binding regulator [Escherichia coli 55989]
 gi|218351635|emb|CAU97350.1| putative nucleic acid-binding regulator [Escherichia coli 55989]
          Length = 299

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 120/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFPPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|330821374|ref|YP_004350236.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
 gi|327373369|gb|AEA64724.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
          Length = 301

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 121/294 (41%), Gaps = 5/294 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
                +LR    V+   SF  AAE L L+ S++S  +  LE  +G +L  R  R ++ T+
Sbjct: 4   RVTLVELRALAAVSSQRSFRKAAEALELAPSTLSHMMRELEERLGTRLLNRTTRSVSPTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    + +   L+    EL  S   P G+LR+  +  +   L++  +  F+  YP+
Sbjct: 64  AGERLVAQLAPILAGLDEALAELSASREAPGGRLRLTASETVSMLLVRHVMPVFIERYPE 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L+ +   +DI  +  D   RL   +    +  R      M   A+P YLK  R P 
Sbjct: 124 VEVDLVAEPAFVDIVAEGYDAGFRLGDDVPRDMVAIRFGSPSRMLPVASPAYLKGRRAPR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL +H  I      P               I       L +N    +++  + G GI
Sbjct: 184 TPDELREHRCI--RARTPAGRPYRWEFERRGEAISLDVQGALTLNRTELMIEAALKGLGI 241

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A++P+ +   +     L  ++ D       ++  YP   +    L+AF   +  
Sbjct: 242 AMVPEKLALPHLRDKSLRALLADWCPVYPGLFLYYPGHRQVPAALRAFIEVLKE 295


>gi|309782244|ref|ZP_07676973.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308919015|gb|EFP64683.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 305

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 123/294 (41%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF      GS   AA +  LS +   + +S +E ++  +L +R  R L+LT+
Sbjct: 1   MDRLTSLGVFVAAVEEGSLAAAARRFGLSAAMAGKHVSAIEADLNARLLHRTTRRLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +    +  + E  +S     G LRIA  +  G   L   +  ++  +P+
Sbjct: 61  TGQTYYERCKRILEAFDEARREASDSQGAARGVLRIAAPVTFGAMHLGEVVARYMEDHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++  L ++ +D+     D AIR+ + + +  L  R+L    M   A+P YL+    P 
Sbjct: 121 VTVEAQLGDRYVDLIDAGVDVAIRIGR-LGAPGLATRRLAPCRMVVCASPAYLERHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL     + F + +     D+      +R         +  N+   ++   V G+GI
Sbjct: 180 RPEELLSAQRLVFSEAVSAG--DWTLRDHENRAHVIDGPCRMAANNTQMLLAAAVAGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A  P ++   +     LV ++        T++  YP   +   K++ F +++  
Sbjct: 238 AYGPTFVFGGHIRRGELVELLPAYRPAELTIHAVYPSTRRIPLKVRRFVDYLVE 291


>gi|229589491|ref|YP_002871610.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361357|emb|CAY48227.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 306

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 125/286 (43%), Gaps = 11/286 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  +A S S + AA +L +   +ISR+++ LE ++G++L +R  R ++LT +G   
Sbjct: 5   EVEAFVAIAASDSLSGAARRLSVLPMTISRRLASLEEQLGVRLVHRTTRSVSLTPEGELY 64

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +    E  +  +   +   SG L++      GQ ++   +   L   P +++ L
Sbjct: 65  LPYAKAMLEADEAARAAILTFAGAASGVLKVTAPTVFGQTVILPMIPALLEENPSLKVDL 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           IL +  IDI     D AIR+   ++ S+LI R L        A+P YL+    P ++++L
Sbjct: 125 ILSDSIIDIVGLGIDVAIRIA-TLRDSALIARHLAPNPRVICASPSYLRRRGVPNTLEKL 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ I    +          L            +    NS  ++     LG G+ +L  
Sbjct: 184 RMHDCIGLHSMPYWP------LIKGGERFSVKADAPFSANSVEAVRAAGKLGLGVVMLSY 237

Query: 247 YIVK---DNPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + V+    + +L  I + D +    T+    P   +   ++KAF +
Sbjct: 238 WDVRSDLADGSLQEIKLTDALPEHLTITALLPTRQQVPYRVKAFLD 283


>gi|269959905|ref|ZP_06174282.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835204|gb|EEZ89286.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 292

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 133/290 (45%), Gaps = 15/290 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +KL +F  VA++ +F+ AAEQL +S+S +S QI  LE+E+   L  R  R + LT +G 
Sbjct: 7   IEKLMLFAEVAQTLNFSRAAEQLGISKSYLSEQIKRLESELATPLIVRTTRSVRLTAEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +     ++  ++   +  L + S +  G +R+       + +L      F  L+P+++ 
Sbjct: 67  SIFAQAEDLKRRVMEMEKSLSQQSEQIDGLIRLTAPKMFAEAVLHDLCVAFRALHPNVEF 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++   +  +++    D A R  +     ++I   L+  +    A+P YL+    P ++ 
Sbjct: 127 EILSSYQAFNLTETSVDFAFRATR-TPPENMIAHHLLNYYHWLVASPQYLQEEGTPETLA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  +T        +    W         +     L  N    + +  + G+GIA L
Sbjct: 186 DLKQHQCLT-------TLHQKEWPLKTGTVQTQ---GWLSSNENRLLKESALSGNGIARL 235

Query: 245 PDYIVK---DNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y V+   +N  LV+++ E+       VY  YP+ +  + K KAF  F+
Sbjct: 236 ASYFVEQDVENGRLVQVLSEETDHQHNAVYLVYPQLIYQSAKTKAFIEFV 285


>gi|226944668|ref|YP_002799741.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
 gi|226719595|gb|ACO78766.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
          Length = 300

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 121/290 (41%), Gaps = 9/290 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L VF  + R  SF  +A +L ++ S++S  +  LE+ +G+KL  R +R +  T+ G
Sbjct: 8   ELADLNVFMTIVRRRSFRQSAVELGVTTSALSHAMKNLESRLGVKLLNRTSRSVVPTQAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S L     + +  +     EL      P G+LR+    D  + LL   L  F   YP++Q
Sbjct: 68  SALAERLEQGFQTIAEALAELDTHRDAPVGRLRLNVPRDASRLLLGPVLPGFFARYPELQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ ++++ +DI  D  D  IR    +    +       +     A+P YL +   P S 
Sbjct: 128 LEVAVEDRMVDIVADGFDAGIRYGGTVPRDMIAMPLTGELRWIVVASPDYLSHHGRPRSP 187

Query: 184 QELDKHNL--ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++L +H    I  GD  P   E    L    R I       L  N    ++Q  + G G+
Sbjct: 188 EDLLRHQCMRIRLGDNTPYKWE----LGDAPRAIHLDVPGSLGANETDILLQATLDGLGL 243

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +   +  V +   +  L  ++ +  +        YP   ++   L+    
Sbjct: 244 SYCLELRVAEELRSGRLEVVLPEWSSMGPPFCMYYPSRRQSQPGLRQLIE 293


>gi|116691661|ref|YP_837194.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116649661|gb|ABK10301.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 299

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 121/298 (40%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F  AA    LS S +S  +  LE  +G++L +R  R +  T
Sbjct: 1   MQTDLGDLNAFMAVARASGFRDAARVTGLSASGLSEAVRRLEARLGVRLLHRTTRSVVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +    ++      + E   +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGERLLARLAPALTEVAAALDGIDEFRGRPAGTLKLNVPVSASRLVLPAIVPRFLDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI++++  D   +D+     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 DIRLEVTADESFVDVLAAGCDAGIRYDERLEQD-MIAVPIGPRIQRFATAAAPDYLDRHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYC 235
            P   ++L  H     G      M  + +    +    EP    L V    +   ++   
Sbjct: 180 RPRHPRDLLGHRC-MRGRFASGAMPPWEYERDGEVVRVEPAAGPLLVQIGGATELMVDAA 238

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G+GI  L +  V+   D+  L  ++E    P    +  YP        L+AF +FI
Sbjct: 239 IAGTGILYLFEDWVRPHFDSGALEPVLEPWWRPFSGPFLYYPGRRLVPPALRAFIDFI 296


>gi|168822949|ref|ZP_02834949.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205340726|gb|EDZ27490.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320085188|emb|CBY94974.1| Uncharacterized HTH-type transcriptional regulator yafC [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 303

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 122/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 5   DLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  +    V+P G +++   + L    +   L +F+  YPD+ 
Sbjct: 65  QTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R +P + S L+ R L       +A+P  +     P +
Sbjct: 125 LQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPDLIARMGIPSA 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     ++      K +  +                 +     L++ +  + G G+ 
Sbjct: 185 PSELSHWPGLSLAS--GKHIHRWELYGPQGARAEVHFTPRMITTDMLALREAAMAGVGLV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +VK+      LV ++E+       ++  +P        ++A  +F+  +
Sbjct: 243 QLPVLMVKEQLAAGELVAVLEEWEPRREVIHAVFPSRRGLLPSVRALVDFLTEE 296


>gi|254249076|ref|ZP_04942396.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875577|gb|EAY65567.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 299

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 122/300 (40%), Gaps = 10/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F  AA    LS S +S  +  LE  +G++L +R  R +  T
Sbjct: 1   MQTDLGDLNAFMAVARASGFRDAARVTGLSASGLSEAVRRLEARLGVRLLHRTTRSVVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +    ++      + E   +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGERLLARLAPALTEVAAALDGIDEFRGRPAGTLKLNVPVSASRLVLPAIVPRFLEAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI++++  D   +D+     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 DIRLEVTADENFVDVLAAGCDAGIRYDERLEQD-MIAVPIGPRIQRFATAAAPGYLDRHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYC 235
            P   ++L  H  +  G      M  + +    +    EP    L V    +   ++   
Sbjct: 180 RPRHPRDLLGHRCLR-GRFASGAMPPWEYERDGEVVRVEPAAGPLLVQIGGATELMVDAA 238

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G+GI  L +  V+   ++  L  ++E    P    +  YP        L+AF +F+  
Sbjct: 239 IAGTGILYLFEDWVRPHFESGALEPVLEPWWRPFSGPFLYYPGRRLVPPALRAFIDFVKA 298


>gi|253996590|ref|YP_003048654.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253983269|gb|ACT48127.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8]
          Length = 310

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 135/302 (44%), Gaps = 17/302 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F      GS   AA    ++ ++ S+ I  LE  +  +L  R  R L LTE
Sbjct: 1   MDTLRSIESFVKAIEGGSIAAAARMQGITPAAASQNIIRLEASLNARLLTRTTRSLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +     V + +E  Q  + E   +P G+L+IAT++  G+++L   +  F  +YP 
Sbjct: 61  AGAIYYEKVRLVINDIENAQSLVTELQGEPQGRLKIATSVAFGRHVLSTIIPSFTAMYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+LIL +++ID   +  D +IR ++ ++   L+ +++  + +   A+P Y+    EP 
Sbjct: 121 LSIELILTDQNIDHVKEDIDISIRFKQQLE-LGLVAKRIAVVPVLFCASPTYISRKGEPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           + + L +H+ + F   +P      NW    D    EP +   +  N   S+ +  + G+G
Sbjct: 180 TPEGLQRHDCLMF--RMPTSGRLLNWGFLRDELRFEPELKPSIISNDINSLAELAIAGAG 237

Query: 241 IALLPDYIVKD---NPNLVRIME---------DVITPSFTVYFCYPEALKNTGKLKAFRN 288
           I  L  +I      N  L+ + +                  Y C+ +    T K+K F N
Sbjct: 238 IVRLAAFIANPLIKNGQLIPLFQRDTNNPSIMHADNEPLEFYACFRDHHAMTLKVKTFIN 297

Query: 289 FI 290
            +
Sbjct: 298 HL 299


>gi|163853886|ref|YP_001641929.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|163665491|gb|ABY32858.1| LysR substrate-binding [Methylobacterium extorquens PA1]
          Length = 301

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 129/297 (43%), Gaps = 9/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  VA SG F  AA  L +S ++++R ++ LE  +G +LF R  R + LTE
Sbjct: 1   MDRLQGMRVFVRVAESGGFAGAARALSMSPAAVTRAVAALEAIIGARLFIRTTRSVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++   +     S+  P+G L +   +  G+  +   + ++L  +P 
Sbjct: 61  AGGRYLEDCRRILAEIAEAEATAAGSTATPTGVLTLTAPVQFGRLYVLPVVTDYLARHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++ +  ++ +++  +  D  +R+   +  S L   ++ ++     AAP YL+    P 
Sbjct: 121 VAVRALFLDRIVNLIEEGIDVGVRIGH-LADSGLTATRVGSVRRVVCAAPSYLERHGVPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H +I  G   P  + +  W    +        + L  N+  + +   + G GI
Sbjct: 180 TPRDLRDHAVI--GASNPGTLPE--WRFGPEGRTTVGVHARLVCNTVDAALAAALDGWGI 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A L  Y V        L  ++ +       ++   PE  +   K +AF +    + R
Sbjct: 236 ARLLSYQVAPAVAEGRLRILLSEDEEAPVPIHVVSPEGRRAPAKTRAFVDLAAARLR 292


>gi|260775724|ref|ZP_05884620.1| probable transcriptional regulator [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608140|gb|EEX34309.1| probable transcriptional regulator [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 301

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/286 (27%), Positives = 135/286 (47%), Gaps = 8/286 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V    SF  AA+ L LS+S++S+ I+ LE  +G+ L  R  R + +T  G + +R 
Sbjct: 9   VFKRVVELDSFHLAADDLGLSRSAVSKNIAELEGFLGVALITRTTRTMRVTPTGEEYYRQ 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             ++         +   +S +  G L ++  + LG   +Q  L +F   YPD+ + ++L 
Sbjct: 69  VCQLLDMWAMADQQAMAASSRMQGTLTVSIPMSLGLVSIQPKLCQFAKQYPDLLLNVLLS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL-SIQELDK 188
           ++ ID+     D AIR    ++ S+L  RKL T+     AAP YL +   PL    +L  
Sbjct: 129 DEQIDLVTGGIDVAIRGSGHLKDSTLHARKLDTLPRVLCAAPCYLADIDLPLNHPSDLSH 188

Query: 189 HNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H+ + +     P     ++        I + R   +Q N+ L++ Q CV G G+ L P  
Sbjct: 189 HDCLIYSLSTSPTNWLFYSEAEECQIAIHQIR---MQTNNTLALKQACVEGLGVMLAPKI 245

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +V++      L  I+ D   P+  VY  YP+  +++  +     F+
Sbjct: 246 MVEEELTRGVLQPILTDWRIPNHDVYAVYPQHKEHSLMVAELIRFL 291


>gi|162449829|ref|YP_001612196.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161160411|emb|CAN91716.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 312

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 126/298 (42%), Gaps = 8/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  D +   +   V R+ SF+ AA +  +  S++SR+I+ LE+ +G++L  R  R L LT
Sbjct: 5   IDLDLNDAALLVRVVRTRSFSAAARERGVPVSTVSRRIARLESALGVRLLERTTRRLDLT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G             L      ++E   +P G++RI   + LG   +   +  +L  +P
Sbjct: 65  EAGRAYFGHAERAIDDLTRGTHHVRELQSEPRGRVRIVAPVALGAA-VASAVCAYLAKHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCRE 179
            + + L +D++ +D+     D AI       ++  + R+L        YA+P YL+    
Sbjct: 124 RVSVDLEIDSRRVDLLAGGFDIAIVPGHVDDTTDFVARELWRATRKLLYASPSYLEARGV 183

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  I++L +H+ I                    R   EPR     V+   +  +  + G 
Sbjct: 184 PQRIEDLARHDCIAVHATDGMATWTLGQGRRRRRVAFEPR---FYVSESSAAYRATLAGV 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIALLP+    ++     LVR+++     +  V   Y      T  ++   + +  + 
Sbjct: 241 GIALLPEVFCAEDVAAKRLVRVLKGYEAEAGGVSLLYRAHRALTAAVRTCIDHLLGEL 298


>gi|295097319|emb|CBK86409.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 295

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 141/295 (47%), Gaps = 5/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +  +F  VA +GSFT AAE + L+++ +S  I  LE E+G+ L  R  R LTLTE 
Sbjct: 2   LNLQRTAMFIAVADTGSFTAAAEAMGLTKAVVSFHIRQLEEELGVTLLLRTTRRLTLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   H+ +  +    E  Q +++ +    +G+LRI TT + G  ++   L EF  L+PD+
Sbjct: 62  GKLFHQRSVMLLRDAERLQDDVRANHAGLTGELRITTTPEYGSQVVVPLLAEFSQLHPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ +  +   D+  +  D AIRL   +  S      + +  +   A P +L N     S
Sbjct: 122 RVRHVSSSLHADLIAERFDVAIRLG-TLADSRYHAALMTSFTILPVATPGWLANHPV-DS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L + + I    L          +          +   L  +S  ++M + + G G+A
Sbjct: 180 LEQLAEADWIIHERLTSPLRWQMRGVDGQPVSFEIKKAPRLYADSAQALMAFALAGCGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP+++V+   D   LV ++         +Y  YP+A     K++ F +F+ ++ 
Sbjct: 240 LLPEWLVRNALDAGELVSLLPAYTFAQQGIYAVYPDARHVPAKVRTFIDFMRVRV 294


>gi|254508033|ref|ZP_05120160.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219549000|gb|EED25998.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 303

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 122/300 (40%), Gaps = 15/300 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  + +F  +        A   L LS ++++ ++  LE   G+KL  R  R L+LT+
Sbjct: 1   MDKFADMEMFVAIVHHRGMASAGRALGLSPATVTARLQNLEQRYGVKLLNRSTRHLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  H+   E+   +  T+  LQ  + +  G L+I+   D+G+  +   L  F  ++PD
Sbjct: 61  AGALYHQSCIEILESVRATENVLQTGTTEVKGPLKISAPKDIGKQYIAPLLSSFCRMHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L++   +++    D  IR  + +  S LI RKL T      A+P YL +  EP 
Sbjct: 121 VIPFLYLNDGLSNMAESGLDLVIRYGE-LADSQLISRKLATSQRVLCASPQYLADYGEPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  EL  H  +            +   A          +     +    + Q+ + G GI
Sbjct: 180 SPTELMAHQCLALIRGNEALQHWY--FAANGEQQSISIMPKRYSDDGEVLRQWAIDGEGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDV--------ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +     V+ +     LV +++          +  S  ++  Y        +++ F + +
Sbjct: 238 VMKSILDVQQDIAQGRLVTLLDGYTKNFSQVSVGQSADLHVIYQSRDYLPKRMRLFLDHL 297


>gi|158426309|ref|YP_001527601.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158333198|dbj|BAF90683.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 308

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               +++R F  VA  GS +  A +L + QSS++R +  LE  VG+ L  R  R ++LTE
Sbjct: 5   DVTLERMRTFVRVAERGSLSAVARELGIGQSSVTRHVRDLEEAVGVVLLNRTTRRVSLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G++ +    ++   +E     L+++   P+G +R++ +   G   L   +  F   YP+
Sbjct: 65  EGARYYADCLQILRLVEQAGDGLRDTRQSPAGTVRLSCSAAFGVLHLCRLMFAFQDRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L L ++ +D+  +  D A+RL  P+  SSL  R L        AAP YL     P 
Sbjct: 125 IEVDLSLSDERVDLVQEGVDLALRLA-PLTDSSLKLRSLGHSRRVLAAAPAYLAAYGRPQ 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + Q++  H  +    +    M   +           P     +V+  L++ +  + G G+
Sbjct: 184 TPQDIADHEGVRMTIVSGSDM--LSLRGPDGERHLVPFGGRFRVDHGLAVREALMAGRGL 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           AL   ++V D      L +++ D   PS  +        +   +++   +F+  +
Sbjct: 242 ALTHIWLVHDLLAEGRLEQLLPDYEAPSMPLSLLIVPGRETITRVRLLIDFLAAE 296


>gi|270263148|ref|ZP_06191418.1| LysR family regulatory protein [Serratia odorifera 4Rx13]
 gi|270042836|gb|EFA15930.1| LysR family regulatory protein [Serratia odorifera 4Rx13]
          Length = 298

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 134/294 (45%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  SGS T AAEQL  + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKITLEELLAFTSVVDSGSITSAAEQLGQTTSGISRALSRLEKKLDTTLMRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   +E  + ++    + P+GKLR+       ++++   +  F   YP
Sbjct: 61  EEGQSFLGHARDIIRSVENAEEQMALRRLIPAGKLRVNAAAPFMEHVIVPLVAGFRQSYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++L  DN  ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIELELNTDNLIIDLLEKRTDIAIRIG-ILRDSTIHARLLGASRLRILASPDYLERYGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++ L +H L+ F       +    W     +         L  +S  ++ Q  + G G
Sbjct: 180 NSVEALREHCLLGFTQPESLNL----WPLRNPQAPHFAITPTLSASSGETLRQLALRGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  L D++ +D+     LV+++E D +     +   Y    +   ++  F +++
Sbjct: 236 IVQLADFMTRDDQRSGRLVQLLEQDTLDVRQPINAVYYRNTQLAARITCFLDYV 289


>gi|157376667|ref|YP_001475267.1| putative transcription regulator [Shewanella sediminis HAW-EB3]
 gi|157319041|gb|ABV38139.1| conserved hypothetical transcription regulator [Shewanella
           sediminis HAW-EB3]
          Length = 303

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 139/301 (46%), Gaps = 14/301 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            DK+  F  V R+GSF+ AA+Q  +S S+ SR I  LE  +G+ L  R  R +  T+ G 
Sbjct: 2   LDKIVYFLHVVRTGSFSDAAKQYGISASAGSRWIIELEENMGVSLLKRSTRKVVPTQAGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      V  +++    E+Q    +  G +RIA+T    +N L   + E+L  YP +  
Sbjct: 62  RLFDRFCHVNTEIDDILTEIQNLGNEDRGVIRIASTPLFAKNFLSRIVGEYLREYPYVSF 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-----SSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +++    D+D  +D  D +IR     Q      S L++R L+   + A  +P Y++    
Sbjct: 122 RIVETAYDVD-HIDEVDFSIRANATYQGYLEKDSLLVKRSLLQYPLKACCSPSYIEQFSC 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P   ++L KHN +    L+        W+  +D       I+  ++V     +    + G
Sbjct: 181 PEFPEDLKKHNCLYASTLVGGN----KWVFELDGEFTTVDIAQTVEVEDSEFLKTVALTG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +GIA LP+ ++KD   +  LV ++++     F     +    +   +   F+ F+  + +
Sbjct: 237 AGIAYLPNQLIKDELADGRLVPVLDNYSNSQFEFSLYFRPRKQMPTRCVNFKEFLLKRVQ 296

Query: 296 D 296
           +
Sbjct: 297 E 297


>gi|74312300|ref|YP_310719.1| putative LysR type transcriptional regulator [Shigella sonnei
           Ss046]
 gi|82544216|ref|YP_408163.1| transcriptional regulator LYSR-type [Shigella boydii Sb227]
 gi|157155739|ref|YP_001462638.1| LysR family transcriptional regulator [Escherichia coli E24377A]
 gi|209918573|ref|YP_002292657.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|218553887|ref|YP_002386800.1| putative nucleic acid-binding regulator [Escherichia coli IAI1]
 gi|256018419|ref|ZP_05432284.1| putative nucleic acid-binding regulator [Shigella sp. D9]
 gi|260867777|ref|YP_003234179.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O111:H- str. 11128]
 gi|293433692|ref|ZP_06662120.1| HTH-type transcriptional regulator ycjZ [Escherichia coli B088]
 gi|300818949|ref|ZP_07099153.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300822502|ref|ZP_07102641.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300904981|ref|ZP_07122799.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300926719|ref|ZP_07142494.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|301307033|ref|ZP_07213071.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|301326934|ref|ZP_07220226.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|307309913|ref|ZP_07589563.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|309796945|ref|ZP_07691346.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|331677116|ref|ZP_08377812.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332279471|ref|ZP_08391884.1| transcriptional regulator [Shigella sp. D9]
 gi|73855777|gb|AAZ88484.1| putative transcriptional regulator LYSR-type [Shigella sonnei
           Ss046]
 gi|81245627|gb|ABB66335.1| putative transcriptional regulator LYSR-type [Shigella boydii
           Sb227]
 gi|157077769|gb|ABV17477.1| transcriptional regulator, LysR family [Escherichia coli E24377A]
 gi|209911832|dbj|BAG76906.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|218360655|emb|CAQ98216.1| putative nucleic acid-binding regulator [Escherichia coli IAI1]
 gi|257764133|dbj|BAI35628.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O111:H- str. 11128]
 gi|291324511|gb|EFE63933.1| HTH-type transcriptional regulator ycjZ [Escherichia coli B088]
 gi|300403130|gb|EFJ86668.1| LysR substrate binding domain protein [Escherichia coli MS 84-1]
 gi|300417295|gb|EFK00606.1| LysR substrate binding domain protein [Escherichia coli MS 182-1]
 gi|300524918|gb|EFK45987.1| LysR substrate binding domain protein [Escherichia coli MS 119-7]
 gi|300528410|gb|EFK49472.1| LysR substrate binding domain protein [Escherichia coli MS 107-1]
 gi|300837751|gb|EFK65511.1| LysR substrate binding domain protein [Escherichia coli MS 124-1]
 gi|300846405|gb|EFK74165.1| LysR substrate binding domain protein [Escherichia coli MS 78-1]
 gi|306909631|gb|EFN40125.1| transcriptional regulator, LysR family [Escherichia coli W]
 gi|308119473|gb|EFO56735.1| LysR substrate binding domain protein [Escherichia coli MS 145-7]
 gi|315060583|gb|ADT74910.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|315254372|gb|EFU34340.1| LysR substrate binding domain protein [Escherichia coli MS 85-1]
 gi|320184454|gb|EFW59261.1| LysR family transcriptional regulator YcjZ [Shigella flexneri CDC
           796-83]
 gi|320199369|gb|EFW73960.1| LysR family transcriptional regulator YcjZ [Escherichia coli
           EC4100B]
 gi|323179708|gb|EFZ65269.1| hypothetical protein ECOK1180_1453 [Escherichia coli 1180]
 gi|323185504|gb|EFZ70865.1| hypothetical protein ECOK1357_0866 [Escherichia coli 1357]
 gi|323378855|gb|ADX51123.1| transcriptional regulator, LysR family [Escherichia coli KO11]
 gi|323947719|gb|EGB43722.1| LysR substrate binding domain-containing protein [Escherichia coli
           H120]
 gi|324117476|gb|EGC11382.1| LysR substrate binding domain-containing protein [Escherichia coli
           E1167]
 gi|331075805|gb|EGI47103.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H591]
 gi|332101823|gb|EGJ05169.1| transcriptional regulator [Shigella sp. D9]
          Length = 299

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 120/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|262368677|ref|ZP_06062006.1| LysR substrate binding domain-containing protein [Acinetobacter
           johnsonii SH046]
 gi|262316355|gb|EEY97393.1| LysR substrate binding domain-containing protein [Acinetobacter
           johnsonii SH046]
          Length = 309

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLEQEMEVVLLHRSTRKLNLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  +I + E      G+LRIATT +LG N +   L  ++  +  
Sbjct: 62  AGQAFFHSCQEMLAAAERGKIRINELRDDLVGELRIATTPELGANHVIPALSHWMSAHRG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I +  DN  +D+     D A+R+   +   S+    L  +     A+P YL       
Sbjct: 122 LSIHIEADNHYVDLMNGRIDIALRMSPTVDDQSVHVVPLAHVEQILVASPSYLNQSAPIS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H+LI    +      DF  + T D    E + S +  N+ L     C  G G+
Sbjct: 182 RPEDLKNHDLIPITIMKNNHDFDFKNVVTGDAVKLEMK-SRVASNNILVTKTLCQHGHGV 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +    V+    N +LV ++ +   P+FT+Y    +  +   K+    + +
Sbjct: 241 ARILYLDVQKELVNGSLVEVLPEWKLPNFTLYAIISKHEQQPMKIHRCLDAL 292


>gi|167588545|ref|ZP_02380933.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 299

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 123/290 (42%), Gaps = 6/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +W+ +R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  TE
Sbjct: 4   DLNWELIRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +       +          SG +RI+ +  +G  +L   L +    +P 
Sbjct: 64  AALALRGHAETLRSAAAAFERAAASHGAGVSGVVRISASDVIGVEVLPPMLTQLRRDHPG 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L   ++  D+    AD A+R+  P Q + L+ R++  I +  YA   YL     P 
Sbjct: 124 LVVELAPTDRIQDVLNREADIAVRMAPPAQDA-LVARRIGNIELGMYARDDYLAEHGAPA 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL +H LI F  + P     F   A    PI       L+ +S L+ +     G GI
Sbjct: 183 TLAELAQHALIGFDAMTP-----FLRAAAHALPIWNRDAFALRTDSNLAQLALIRAGYGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +    + K +  LVR++ D +      +    E L+ + + +A  + + 
Sbjct: 238 GICQTALAKRDARLVRVLPDQVVLPLETWVVMHEDLRASPRCRATFDALV 287


>gi|163794608|ref|ZP_02188579.1| Trancriptional regulatory protein, LysR family [alpha
           proteobacterium BAL199]
 gi|159180332|gb|EDP64855.1| Trancriptional regulatory protein, LysR family [alpha
           proteobacterium BAL199]
          Length = 301

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 125/294 (42%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ L  F  V   G F+ A   L + +S +S++IS LE  +G++L  R  R   +T+ G
Sbjct: 3   DFNDLYYFAKVVEHGGFSAAGRALGVPKSRLSQRISHLEERLGVRLIQRSTRLFNVTDIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +  + E  Q  +     +PSG +R++    +    +   +  F+   P + 
Sbjct: 63  HEYYLHCVAMLVEAEAAQESIDRIRAEPSGLVRVSCASSVLYYQVAEMIARFMAECPKVH 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L+  N+ +D+  +  D AIR+R  P++ S L+ +          AAP  L    + L 
Sbjct: 123 VHLVSTNRRVDVIREGFDMAIRVRFPPLEESDLMMKVFARSKQCLVAAPALLDGLPKALM 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             ++ +   +++G    +   +++                L     +++    + G G+A
Sbjct: 183 PTDVGRLPSLSWG--ASRQTHEWSLEGPDGATAIVRHNPRLVTEDMVALRLAALRGVGVA 240

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P  ++K +     LV ++ D    +  ++  +P        ++A  + +  +
Sbjct: 241 QMPVMVIKHDLQEEALVNVLPDWAPSAGIIHAVFPSRRGLLPSVRALLDHLASQ 294


>gi|269962338|ref|ZP_06176688.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
 gi|269832834|gb|EEZ86943.1| transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
          Length = 306

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNSLRVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLSLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  +     ++ E S    G L I+         L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTSIAEATDKVLERSE--KGALTISLPPSFAIQWLVPRLADFNAQEPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +   S+ 
Sbjct: 126 RIKAVDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPSLLLGNKPLGSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +D+   A      G         +    ++Q    G G+AL 
Sbjct: 185 DLKLHTLLH-----DTSRKDWKQFARQHNIEGINVNHGPIFSHSTMVLQAAAHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            + + K   +   L+   ++V+      Y    E   + G++  FR+++   AR
Sbjct: 240 NNVLAKPEMEAGRLIAPFDEVLVSKNAFYVVCHEQQADMGRIATFRDWMLATAR 293


>gi|309780410|ref|ZP_07675160.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308920803|gb|EFP66450.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 298

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 118/286 (41%), Gaps = 6/286 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R +  LE  +G+ LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTVGRHVDALERALGMSLFIRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                   G +RI  +  +   +L   L +    YP++ +
Sbjct: 68  SLRPFAESLEATSAALLRAASSQGEGVRGTVRITASEVVAVEVLPPILADLHAAYPELTL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N+  D+    AD A+R+  P Q   L+ R L  I +  +A   YL     P +I+
Sbjct: 128 ELVPSNRMEDLLRREADIAVRMHPPSQ-GVLVARHLGGIELGLFAHQRYLAQRGMPTTIE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H LI +                V R         L+ +S L+ +     G GI   
Sbjct: 187 ELAGHTLIGYDKENAFLRSMRAQFPWVQR-----NRFALRTDSDLAAIAALRAGFGIGFC 241

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + + N +LVR+  + I  +   +    E L+++ + +   + +
Sbjct: 242 QVGLARHNADLVRLFSEQIAITLDTWLAMHEDLRDSPRCRVVFDAL 287


>gi|257140982|ref|ZP_05589244.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 307

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 131/290 (45%), Gaps = 10/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +     V  SGSF+ AA +L  ++S +S ++  LE  +G  L  R    L LTE G    
Sbjct: 1   MSTLVAVVESGSFSEAARRLGTTKSIVSHRVQQLEKRLGCALLTRGRP-LQLTEPGRNFF 59

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +  +LE  + E+QE+     G LR+        + L   L  F   Y  + +++ 
Sbjct: 60  ERSRILLQELERMEDEVQEAGASLHGTLRLTVPATFVTHRLAPLLARFAAKYQALCVEVE 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++  ++   + D AIR+ + +  S+L+ R L   H    A+P YL     P    EL 
Sbjct: 120 AEDRLSNLQDGHFDIAIRIGR-LADSNLVARPLCANHHLICASPAYLARRGVPAHPAELL 178

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
            H+ + + +  P  M    W   +D      R+   ++ +S   ++   + G G+A+LP 
Sbjct: 179 HHDGLIYLNREPNGM----WNLPLDGAQQSFRVRTQMRSDSGHQLLAGALAGLGLAILPT 234

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++  D     +LV ++ D I P   +   Y + ++ + +++A   F+  +
Sbjct: 235 FLAADALLAGDLVPVLTDHIPPGGQISALYRKTIRTSPRIQALIEFLVDE 284


>gi|260222552|emb|CBA32228.1| hypothetical protein Csp_D31080 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 298

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 126/293 (43%), Gaps = 8/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D + +F  +A+ G+ + AA + ++  S ++R ++ LE   G++L +R   GL+LT
Sbjct: 1   MQLQLDDVALFTRIAKLGTLSAAARERNVPVSQVTRALTRLEAACGVRLLHRTTHGLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L      +         EL      PSG +R++ +  L + ++  +L+     +P
Sbjct: 61  DEGDTLLSYGQRLLETTAELDSELSGKLSGPSGWVRVSVSPLLAECVIAPSLQGLYDRHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +  D++  D++ D  D AIR   P  S +L+ RK+       YAAP YL  C  P
Sbjct: 121 ALHLDINADDRVADMARDGIDIAIRTGSP-NSDTLVARKIGEHGRSLYAAPAYLARCGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H+LI      P          +    +  P     + ++   ++     G G
Sbjct: 180 QHPDDLALHHLIA-NSASPSLNRWTRAGGSTTAALTVP--GHTRTDNTAILLSLVRHGVG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNF 289
           IA L D +      +  LV +++         ++    +      K++A  ++
Sbjct: 237 IARLNDLMAAPLVRSGELVPLLQTHFDGGRVPIFAVMLQERHRLPKIRACIDY 289


>gi|197337234|ref|YP_002158790.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314486|gb|ACH63935.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 320

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 9/293 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   ++L +F  V + GSFT AA    +  S++S+QI  LE E+G++L  R  R  +LT
Sbjct: 1   MSL-VNQLSLFIDVVQQGSFTKAAALHDMDNSALSKQIKKLEAELGVQLLNRSTRTFSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G ++     ++   L+  +         P G++RI   + +GQ  LQ  + +F+  YP
Sbjct: 60  PAGEEILEQAHQLVGSLDNVKSIADSYQAVPKGRIRITAPLHIGQGYLQPVISQFMTTYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L++D+K  DI  ++ D A RL + +  SSLI +K+  I     A+  ++K   EP
Sbjct: 120 DVEVVLMMDDKRSDIISEHFDVAFRLGR-LDDSSLIAKKVADIRGVILASHSFIKRFGEP 178

Query: 181 LSIQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            + +EL     + + +  +              +          +VN   +++     G 
Sbjct: 179 STPEELVNLPSVIYSNGTLTVDTVRLGESPDSSQFKSYKMKGNYKVNDVRTLLSAVQDGL 238

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFR 287
           G A++    ++ +     L  ++ D         VY  YP   + T  ++ F 
Sbjct: 239 GYAVVASSNLERSIESMGLTTLLTDYPLCNQGLAVYALYPHRKQ-TALVREFI 290


>gi|332991711|gb|AEF01766.1| LysR family transcriptional regulator [Alteromonas sp. SN2]
          Length = 295

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 118/286 (41%), Gaps = 5/286 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F+ V   GSF  AA++L +S +++S  +  LE  + ++L  R  R +  T +G   ++ 
Sbjct: 9   AFHAVVEQGSFIGAAKKLGVSSTAVSNSVKKLEARLNVRLLERSTRVVRETHEGRSFYQQ 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
           +   + KLE +  E+++ S   +G++ IA   DL +  L G L  FL +YP+++ ++   
Sbjct: 69  SRLAFAKLEESFEEVKDKSEILAGEIVIAAPTDLAKTRLLGVLDSFLSIYPEVRFRVNTS 128

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   D+     D AIR   P   S L+ R L         +P ++          EL   
Sbjct: 129 DFVEDLYSGDIDIAIRYGIP-SDSRLVARPLSDKRRVLCVSPDFILKHGHIQHPSELSHL 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I +  +  K   ++ +     + I     S    ++     ++ V G GI       V
Sbjct: 188 PCICY-KVRDKIDNEWVFYNRSGQRIQVKVNSQFCTDNSSIAREWAVRGKGIVYKSSVDV 246

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++     LV  +   +     +   YP A     ++K   + +  
Sbjct: 247 HEDIKKGRLVTALNQFVGQESALNVIYPSARYQPLRVKYLIDCLIE 292


>gi|222109112|ref|YP_002551378.1| LysR family transcriptional regulator [Agrobacterium radiobacter
           K84]
 gi|221728034|gb|ACM31084.1| LysR family transcriptional regulator [Agrobacterium radiobacter
           K84]
          Length = 341

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 134/296 (45%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+  LR F ++  SGSF  AA  L ++ S++S  I  LE  +G KL  R  R + LTE G
Sbjct: 26  DFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRLTEAG 85

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+L R    +  + +T   +L E   KPSG L++       +  ++  L  F   Y DI 
Sbjct: 86  SRLARRLGPMMSEFDTLMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAYTDIT 145

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLS 182
           I L + +  +DI++   D A+   + IQ   LI  +L        YA+P YL     P  
Sbjct: 146 IDLTIGDVLVDIAVSGFDAAVIPNRSIQDD-LISIRLGPELKRIVYASPRYLARFGAPSE 204

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  HN I F       +  + +    +R       S +  +S  ++    + G GI 
Sbjct: 205 PGDLVHHNCINFRGPHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTL-SAALSGKGIG 263

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + I K   D+ +L+ ++E  + P      CYP+    +  LKA  +++  ++R
Sbjct: 264 YGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSR 319


>gi|23500633|ref|NP_700073.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|161620959|ref|YP_001594845.1| hypothetical protein BCAN_B0925 [Brucella canis ATCC 23365]
 gi|254700107|ref|ZP_05161935.1| hypothetical protein Bsuib55_04494 [Brucella suis bv. 5 str. 513]
 gi|254720229|ref|ZP_05182040.1| hypothetical protein Bru83_11993 [Brucella sp. 83/13]
 gi|256015667|ref|YP_003105676.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|256058927|ref|ZP_05449141.1| hypothetical protein Bneo5_01031 [Brucella neotomae 5K33]
 gi|260567841|ref|ZP_05838310.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|261322867|ref|ZP_05962064.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|294853855|ref|ZP_06794527.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|306838629|ref|ZP_07471465.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|306841534|ref|ZP_07474232.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306846116|ref|ZP_07478678.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|23464276|gb|AAN34078.1| transcriptional regulator, LysR family [Brucella suis 1330]
 gi|161337770|gb|ABX64074.1| Hypothetical protein BCAN_B0925 [Brucella canis ATCC 23365]
 gi|255998327|gb|ACU50014.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260154506|gb|EEW89587.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|261298847|gb|EEY02344.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|294819510|gb|EFG36510.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|306273367|gb|EFM55228.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306288371|gb|EFM59730.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306406272|gb|EFM62515.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 310

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 127/294 (43%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    S+   S    IAT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAMASAQSTS-SFSIATLPTFGTRWLMPRIPDFVEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   +   D      D AI   +P+ + +     L +  +   A+P  LK  R P S 
Sbjct: 129 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHA-TCTFLCSEVIVPVASPSLLKTRR-PASP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+   L+    L  +      W  +     G+      +   +  ++   + G G AL
Sbjct: 187 EELENEPLLH---LATRPKMWAQWFESCGVE-GQSAYRGHRFEQFSMVIGAALAGLGFAL 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++    +  LV + E  +      Y   PE        + F  +I  + 
Sbjct: 243 LPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEGKLENPLTQVFCQWIAGQV 296


>gi|332141389|ref|YP_004427127.1| transcriptional regulator, LysR family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551411|gb|AEA98129.1| transcriptional regulator, LysR family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 302

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 127/297 (42%), Gaps = 6/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L V   VA   + T AA  L++  ++ S  +  +E  VG +LF R  R L L+  
Sbjct: 1   MLLDDLNVVIKVAEFRNITAAATHLNMRTATASAAVKRVEQAVGAELFVRTTRSLRLSSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    L+  +  L+  +    G+LR+  + DLG+N++   L +F+  +  I
Sbjct: 61  GERFLPTCEQAMSMLKNAKQNLKGETGVIEGELRLGLSSDLGRNVIAPWLDDFMNEHEKI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L++ +ID   D  D A+R   P   +S+   K+  +     A+P Y+     P  
Sbjct: 121 SVKLNLNDSNIDFYRDPIDLALRYGSP-DDASVYGFKICDVPRLLVASPSYISTYGAPEQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  HN + +  L  K   ++ ++    +P+          N    + ++ V G G+A
Sbjct: 180 FEDLQAHNGLFY-QLHDKVYNEWEFVHE-GKPLKIKMQGNRTANDGEMVRRWAVAGKGVA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +       D+     L+ ++ D       ++   P     T  ++  R+ +  +  +
Sbjct: 238 VKSSLDACDDILNGRLITLLSDYQPKPTQLWLICPSRQSITPAVRLLRDMLKTRCAE 294


>gi|325928688|ref|ZP_08189861.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|325540945|gb|EGD12514.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 300

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 116/288 (40%), Gaps = 5/288 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ L  F  V    SF  AA ++ L+ SS+S  IS LE  +G++L +R  R ++LTE G
Sbjct: 5   SFNDLVAFTAVVTHRSFRRAAAEVGLAPSSLSHVISALERNLGVRLLHRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+        +++   + L +    PSG +RI     + Q LLQ  + + L  +P + 
Sbjct: 65  ERLYARLVPALQEVDHALLALDDFRGGPSGTVRINAPEVVVQVLLQQVVPQVLARHPALS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+ + + +DI     D  IR  + +    +           A AAP YL     P + 
Sbjct: 125 VDLVSEGRLVDIVAAGCDAGIRFSESVPQDMVAVPFGGPTRFLAVAAPAYLARAGIPSTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +H  I     +P               +       L ++    + +    G GIA 
Sbjct: 185 DALHRHACI--RHRMPSGRLYHWEFERRGEEVVIDVPGRLTLDQIAPMREAAEAGLGIAY 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P+Y V        LV +++        +   YP        L+AF  
Sbjct: 243 VPEYAVSAALQRGTLVPVLDAWCPTIPGLVLYYPGHRHLPPGLRAFIE 290


>gi|206562644|ref|YP_002233407.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038684|emb|CAR54644.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 315

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 118/295 (40%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G 
Sbjct: 21  LQCLIAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGE 80

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           ++  +            +L IA +  +    L   L +F   YP+I++
Sbjct: 81  QY--AAQVHRLLVQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPDFRATYPNIKL 138

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   
Sbjct: 139 RLIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLA--GRTLDAA 196

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+   D   + M    W    D    + +   + +NSY  I+Q  +LG G++L 
Sbjct: 197 DLANETLLRLEDGQRQWMSWSEWFDLNDVDRQKAQPQDITINSYPQIVQMTILGQGVSLG 256

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             Y++    +   LVR+ E   +     Y   P         + F  ++F +A  
Sbjct: 257 WRYMIDACIEAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWLFEQAEQ 311


>gi|193067205|ref|ZP_03048174.1| transcriptional regulator, LysR family [Escherichia coli E110019]
 gi|192959795|gb|EDV90229.1| transcriptional regulator, LysR family [Escherichia coli E110019]
          Length = 299

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IEHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|253999084|ref|YP_003051147.1| LysR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253985763|gb|ACT50620.1| transcriptional regulator, LysR family [Methylovorus sp. SIP3-4]
          Length = 305

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 125/298 (41%), Gaps = 7/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + +RVF   A + SF  AA +L +S  +++R I  LE  +G  LF+R+ R + +T
Sbjct: 1   MSNKLEMMRVFCAAADASSFKEAALRLGISPQAVTRAIKDLEYALGELLFHRNTRQIRIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKL-RIATTIDLGQNLLQGNLKEFLLLY 119
           E G        +    ++        S     G L RI   + +G+  L   L++    Y
Sbjct: 61  EFGRGFALEARKALADVDNLFTPGAGSKPSEFGGLVRITVPMGIGRTFLLPLLRDLSSSY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P IQ  + L +   D+  +  D  IR+   ++ +  I +    +     A+P  +K   +
Sbjct: 121 PGIQFDIRLSDNIADVIDEQIDIGIRVGATLKDNGFIAKAASRVAFWNVASPALIKRIGK 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PL+ Q+L      T G + P     + W+    + + +     L  N     +Q  + G 
Sbjct: 181 PLTPQDLLHLP--TTGLIAPSSGRAWPWMFARGQQL-QINNQVLLTNDSQLEIQAVLDGI 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  +   +   +     LV ++ED     +T+Y   P+      +++   +++  + 
Sbjct: 238 GIGQIGSCMAIPHIREGRLVPLLEDYTAEPWTLYVYRPQRGPVAPRVRIVFDYLAEEL 295


>gi|170721294|ref|YP_001748982.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759297|gb|ACA72613.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 296

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 12/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF VVAR  +F  AA++L ++Q+++++QI GLE  +GIKLF R  RGL+LT  G 
Sbjct: 11  LNGLRVFEVVARHLNFRLAADELGVTQAAVAQQIRGLEANLGIKLFERLPRGLSLTGAGQ 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +  + +    L+  +      L ++ T       L   L  F   +PDI +
Sbjct: 71  RYSVDIRSAFALIGSATQALRPDASH----LTVSVTPTFAAKWLIPRLSSFAQQHPDIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  ++      +  D A+R   P     L     +   + A A+P  L+   +P  ++
Sbjct: 127 QVLATDRLCQFRPEGVDIAVRYGVPPFGPGLHTEPFLAQRVVAVASPALLEQLGKPEDLE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+              ++  V      P    ++ N     +   + G G+AL 
Sbjct: 187 QLQRYPLLHDAHNF-----WPGFITEVFHRHLPPGAKNVRFNQTSLAIDAAIAGQGLALA 241

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++ V  +    R+    + V+      Y  +P        L   R ++  +A
Sbjct: 242 SEFFVHSDLRAGRLALAFDQVLDLQQAFYLVWPRNAHQPPALATVRAWLLEQA 294


>gi|170729122|ref|YP_001763148.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169814469|gb|ACA89053.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 289

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 143/289 (49%), Gaps = 12/289 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++ ++F ++   GS    A+ L++S S++S++++ LE+++G++L  R  R + +TE G 
Sbjct: 4   FERAQLFKLIVELGSMVATAKALNISPSAVSKRLAELESQLGVQLLKRSTRSIVITEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   E+  + ++   E       PSG+L +A    +   +L   L  F   +P+I++
Sbjct: 64  HFYQEVRELSGRWQSLVDETATLGESPSGRLTVAAPAPVLSRVLMPMLPGFNANFPEIKL 123

Query: 125 QLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L+  + D D+ +  AD ++ R  +   S + +   L       +A+P Y+     P  +
Sbjct: 124 ELLSVDYD-DLPLRSADISLARHIEAFDSGTFVGVPLCEYRNGLFASPEYINKHGSPHKV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H+ + +G       E+ ++L  +     E +   L  ++   I+Q  V G GIA 
Sbjct: 183 EELVQHSCLCYGK------ENRSYLWCLGEESVEVK-GRLVSDNTEVIIQAAVQGMGIAY 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +P  I++       L+ ++  V +  F+++  Y +      K +AF ++
Sbjct: 236 IPRMIIERELACGELMSVLTYVESQRFSMWGYYQQLAYLPAKTRAFIDY 284


>gi|91210623|ref|YP_540609.1| transcriptional regulator YcjZ [Escherichia coli UTI89]
 gi|110641564|ref|YP_669294.1| LysR family transcriptional regulator [Escherichia coli 536]
 gi|117623582|ref|YP_852495.1| transcriptional regulator YcjZ [Escherichia coli APEC O1]
 gi|191171072|ref|ZP_03032623.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|218558316|ref|YP_002391229.1| nucleic acid-binding regulator [Escherichia coli S88]
 gi|237705359|ref|ZP_04535840.1| transcriptional regulator YcjZ [Escherichia sp. 3_2_53FAA]
 gi|300972020|ref|ZP_07171780.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|306813646|ref|ZP_07447827.1| LysR family transcriptional regulator [Escherichia coli NC101]
 gi|91072197|gb|ABE07078.1| hypothetical transcriptional regulator YcjZ [Escherichia coli
           UTI89]
 gi|110343156|gb|ABG69393.1| hypothetical transcriptional regulator YcjZ (LysR family)
           [Escherichia coli 536]
 gi|115512706|gb|ABJ00781.1| hypothetical transcriptional regulator YcjZ [Escherichia coli APEC
           O1]
 gi|190908804|gb|EDV68392.1| transcriptional regulator, LysR family [Escherichia coli F11]
 gi|218365085|emb|CAR02791.1| putative nucleic acid-binding regulator [Escherichia coli S88]
 gi|226900116|gb|EEH86375.1| transcriptional regulator YcjZ [Escherichia sp. 3_2_53FAA]
 gi|294492702|gb|ADE91458.1| transcriptional regulator, LysR family [Escherichia coli IHE3034]
 gi|300309242|gb|EFJ63762.1| LysR substrate binding domain protein [Escherichia coli MS 200-1]
 gi|305852920|gb|EFM53365.1| LysR family transcriptional regulator [Escherichia coli NC101]
 gi|307627097|gb|ADN71401.1| LysR family transcriptional regulator [Escherichia coli UM146]
 gi|315289172|gb|EFU48570.1| LysR substrate binding domain protein [Escherichia coli MS 110-3]
 gi|323949068|gb|EGB44960.1| LysR substrate binding domain-containing protein [Escherichia coli
           H252]
 gi|323956890|gb|EGB52622.1| LysR substrate binding domain-containing protein [Escherichia coli
           H263]
 gi|324011333|gb|EGB80552.1| LysR substrate binding domain protein [Escherichia coli MS 60-1]
          Length = 299

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKGKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|288550338|ref|ZP_05970043.2| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315519|gb|EFC54457.1| transcriptional regulator, LysR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 331

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 138/295 (46%), Gaps = 5/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +  +F  V  SGSFT AA+ L L+++ +S  I  LE E+G+ L  R  R L LTE 
Sbjct: 38  LNLQRTAMFVAVVESGSFTAAADALGLTKAVVSFNIRQLEDELGVTLLLRSTRRLRLTEA 97

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++ +  +    E+   +++ +    +G+LRI +T + G  ++   L EF LL+P++
Sbjct: 98  GELFYQRSLALLKNAESLADDVRANHAGLTGELRITSTPEYGAKVVVPLLAEFSLLHPEL 157

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+  +   D+  +  D AIRL   +  S      +    +   A+P +L       S
Sbjct: 158 RVRLVSSSLHRDLISERFDVAIRLG-TLADSRYHAALISHFAILPVASPAWLHAHPV-DS 215

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L +   I    L                 +   +   L  +S  ++M + + GSG+A
Sbjct: 216 PEALAQAEWIIHERLASPLRWQLRKADGESVVLEIKKAPRLYADSAQALMAFALAGSGVA 275

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP ++V+   D   LV ++ +       +Y  YP+A   + K++ F +F+  + 
Sbjct: 276 LLPAWLVQNALDTGQLVPVLPEYTFAQQGIYAVYPDAQHVSAKVRTFIDFMRARV 330


>gi|62317267|ref|YP_223120.1| LysR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269248|ref|YP_418539.1| transcriptional regulator LysR [Brucella melitensis biovar Abortus
           2308]
 gi|189022528|ref|YP_001932269.1| transcriptional regulator, LysR family [Brucella abortus S19]
 gi|237816828|ref|ZP_04595820.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|254690773|ref|ZP_05154027.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 6 str. 870]
 gi|254695921|ref|ZP_05157749.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|254698553|ref|ZP_05160381.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254703227|ref|ZP_05165055.1| transcriptional regulator, LysR family protein [Brucella suis bv. 3
           str. 686]
 gi|254732001|ref|ZP_05190579.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 4 str. 292]
 gi|256255957|ref|ZP_05461493.1| transcriptional regulator, LysR family protein [Brucella abortus
           bv. 9 str. C68]
 gi|260544506|ref|ZP_05820327.1| transcriptional regulator [Brucella abortus NCTC 8038]
 gi|260756346|ref|ZP_05868694.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260763013|ref|ZP_05875345.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882171|ref|ZP_05893785.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|261216348|ref|ZP_05930629.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261753856|ref|ZP_05997565.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|297249316|ref|ZP_06933017.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196]
 gi|62197460|gb|AAX75759.1| transcriptional regulator, LysR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82939522|emb|CAJ12495.1| Bacterial regulatory protein LysR, HTH motif:Immunoglobulin/major
           histocompatibility complex:LysR substrate binding domain
           [Brucella melitensis biovar Abortus 2308]
 gi|189021102|gb|ACD73823.1| transcriptional regulator, LysR family [Brucella abortus S19]
 gi|237787641|gb|EEP61857.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|260097777|gb|EEW81651.1| transcriptional regulator [Brucella abortus NCTC 8038]
 gi|260673434|gb|EEX60255.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676454|gb|EEX63275.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260871699|gb|EEX78768.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|260917955|gb|EEX84816.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261743609|gb|EEY31535.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|297173185|gb|EFH32549.1| transcriptional regulator LysR [Brucella abortus bv. 5 str. B3196]
          Length = 310

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 127/294 (43%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    S+   S    IAT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAMASAQSTS-SFSIATLPTFGTRWLMPRIPDFVEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   +   D      D AI   +P+ + +     L +  +   A+P  LK  R P S 
Sbjct: 129 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHA-TCTFLCSEVIVPVASPSLLKTRR-PASP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+   L+    L  +      W  +     G+      +   +  ++   + G G AL
Sbjct: 187 EELENEPLLH---LATRPKMWAQWFESCGVE-GQSAYRGHRFEQFSMVIGAALAGLGFAL 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++    +  LV + E  +      Y   PE        + F  +I  + 
Sbjct: 243 LPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEGKLENPLTQVFCQWIAGQV 296


>gi|15801839|ref|NP_287857.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 EDL933]
 gi|15831164|ref|NP_309937.1| transcriptional regulator LYSR-type [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749029|ref|ZP_02774051.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168756012|ref|ZP_02781019.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168762655|ref|ZP_02787662.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168769413|ref|ZP_02794420.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168775156|ref|ZP_02800163.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168782860|ref|ZP_02807867.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168788343|ref|ZP_02813350.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|168799641|ref|ZP_02824648.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|195937997|ref|ZP_03083379.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EC4024]
 gi|208811160|ref|ZP_03252993.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208815505|ref|ZP_03256684.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208819658|ref|ZP_03259978.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209400888|ref|YP_002270389.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217329169|ref|ZP_03445249.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254792922|ref|YP_003077759.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|261224322|ref|ZP_05938603.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257424|ref|ZP_05949957.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282424|ref|YP_003499242.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|12515432|gb|AAG56471.1|AE005373_5 putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. EDL933]
 gi|13361375|dbj|BAB35333.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O157:H7 str. Sakai]
 gi|187769290|gb|EDU33134.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188016574|gb|EDU54696.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4113]
 gi|188999724|gb|EDU68710.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189356781|gb|EDU75200.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189361538|gb|EDU79957.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189367066|gb|EDU85482.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189371842|gb|EDU90258.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC869]
 gi|189377969|gb|EDU96385.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC508]
 gi|208724666|gb|EDZ74374.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208732153|gb|EDZ80841.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208739781|gb|EDZ87463.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209162288|gb|ACI39721.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209771458|gb|ACI84041.1| putative LYSR-type transcriptional regulator [Escherichia coli]
 gi|209771460|gb|ACI84042.1| putative LYSR-type transcriptional regulator [Escherichia coli]
 gi|209771462|gb|ACI84043.1| putative LYSR-type transcriptional regulator [Escherichia coli]
 gi|209771464|gb|ACI84044.1| putative LYSR-type transcriptional regulator [Escherichia coli]
 gi|209771466|gb|ACI84045.1| putative LYSR-type transcriptional regulator [Escherichia coli]
 gi|217317608|gb|EEC26036.1| transcriptional regulator, LysR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254592322|gb|ACT71683.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|290762297|gb|ADD56258.1| putative transcriptional regulator LYSR-type [Escherichia coli
           O55:H7 str. CB9615]
 gi|320189912|gb|EFW64564.1| LysR family transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. EC1212]
 gi|320637232|gb|EFX07058.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. G5101]
 gi|320642599|gb|EFX11847.1| LysR family transcriptional regulator [Escherichia coli O157:H-
           str. 493-89]
 gi|320647952|gb|EFX16660.1| LysR family transcriptional regulator [Escherichia coli O157:H-
           str. H 2687]
 gi|320653554|gb|EFX21659.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659143|gb|EFX26735.1| LysR family transcriptional regulator [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|326341002|gb|EGD64795.1| LysR family transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. 1125]
 gi|326343243|gb|EGD67010.1| LysR family transcriptional regulator YcjZ [Escherichia coli
           O157:H7 str. 1044]
          Length = 299

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I+D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 IIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|90417395|ref|ZP_01225320.1| hypothetical transcription regulator protein [marine gamma
           proteobacterium HTCC2207]
 gi|90330837|gb|EAS46106.1| hypothetical transcription regulator protein [marine gamma
           proteobacterium HTCC2207]
          Length = 300

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 21/304 (6%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  V  +GSFT AAE   +  SS+SR+I+ LE  +G  L  R  R + +TE
Sbjct: 1   MDQLKALRYFSKVVETGSFTRAAEAFSVPPSSLSRRIADLEKTLGANLLKRSTRVVQVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++  +LE +   ++    KP G LRI+  +  G+ +L   L EF  LYP+
Sbjct: 61  IGQLYFKQVEDILAQLEQSDETVRSYQAKPKGVLRISAMVSFGERMLLPLLDEFKTLYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++   +S D  D AIR      +  +   +L+       AA  YL     P 
Sbjct: 121 IILDLSLSDELSTLSRDDVDIAIR-GGYAPNERVQAVRLMDNEFIPVAAASYLAAIGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCME----DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
              EL +H  + F             D  WL     P        +  N+   + Q  + 
Sbjct: 180 KATELKQHQGLFFRTPAGPSPWLCQMDGQWLDVSGSP-------AIISNNGKWLGQQAIN 232

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVIT-----PSFTVYFCYPEALKNTGKLKAFRNF 289
           G GI + P ++++   D+  L  +  +        P   +Y  Y +      K+K   +F
Sbjct: 233 GRGIMMAPRWLMQDYFDSGELQELFIEPTLRVSQNPDLAIYLLYQKQQYLVPKVKVAVDF 292

Query: 290 IFLK 293
           +  +
Sbjct: 293 LVSR 296


>gi|312796334|ref|YP_004029256.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312168109|emb|CBW75112.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 304

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 137/303 (45%), Gaps = 9/303 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+    V  +GS T  A+QL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 5   MKITLDELQALVSVVDTGSITAGAQQLGLTISATSRTLGRLEEKLKTTLVRRTTRRLELT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E+ Q  +     +PSG+LR+        +++   ++ +   YP
Sbjct: 65  EEGRAFLSDARAIIASVESAQERMAAYRERPSGRLRVDAATPFMLHVIVPLVQGYRERYP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+   ++ S+L ++ +    +   A+P YL+    P
Sbjct: 125 HVELELNSNEGIIDLLERRTDVAIRIGA-LKDSTLHRKAVGRSRLRILASPAYLEAHGHP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H L+ F    P+ +  +  L     P        +  +S  ++ Q  + G+G
Sbjct: 184 KRVEDLTRHALLGFNQ--PEALNVWPILGPDQEPYRI--TPTIWSSSGETLRQLALAGAG 239

Query: 241 IALLPDYI-VKD--NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  L D++ V+D  +  LV +           +   Y      + ++ +F +++    RD
Sbjct: 240 VVCLSDFMTVRDRRDGMLVELFPRQTQDVRQPINAVYYRNTAISARIASFVDYLVDAVRD 299

Query: 297 WKF 299
            +F
Sbjct: 300 TEF 302


>gi|194291375|ref|YP_002007282.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225279|emb|CAQ71221.1| Putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 300

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 124/297 (41%), Gaps = 9/297 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D    ++ F  +   GS T AA  L  S  ++ R ++ LE E+ ++L  R  R L+LT
Sbjct: 4   AMDKLRAMQTFVRIVDEGSLTAAAASLRTSLPAVVRTLAALEAELQVRLLNRTTRRLSLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G         +   ++  +  L ES V+PSG+L +  ++  GQ  +   +  F+  YP
Sbjct: 64  AEGRSYLDGCRRILANIDEVEAGLTESHVEPSGQLTLTASVLFGQMYVAPAVTRFVQRYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++ ++   ++ +++  +  D  +R+  P+  S+L+ + +  I     A P YL+    P
Sbjct: 124 RVRCRMEFTDRVVNLLEEDLDVGVRIG-PLADSTLVAQSVGRIRRVVVATPAYLRKHGVP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL   N + F                 +R    P    L+ N     +  C   +G
Sbjct: 183 RHPDELAGANCLRFTGNHAHWWS----FRDGEREFHVPVSGNLEFNQTAPAVAACAADAG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                 Y V    +   L  ++ED   P++ +   YP A     + +AF  ++  + 
Sbjct: 239 FGHFLSYQVAQLVEARKLRIVLEDFELPAWPLSLIYPHARLLPARTRAFIEWMRDEL 295


>gi|254248012|ref|ZP_04941333.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124872788|gb|EAY64504.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 303

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL   P+
Sbjct: 61  EGAAFLERCRGLLSEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLADKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 MQLSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPDYFRLHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L KHN + F     +  ++  W       I   R++  L  N    + ++   G G
Sbjct: 180 SLDDLLKHNCLAFNL---QGGQNRGWYFQRHGKIATMRVTGNLDCNDGELLHRWVAEGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     + +    +   L  +++D   P + +   YP+      +++ F +++   
Sbjct: 237 LGWRSTWEIAAQLETGELETVLDDYALPDYDILAVYPQQRYVPARVRYFIDYLREA 292


>gi|163758160|ref|ZP_02165248.1| transcriptional regulator, LysR family, putative [Hoeflea
           phototrophica DFL-43]
 gi|162284449|gb|EDQ34732.1| transcriptional regulator, LysR family, putative [Hoeflea
           phototrophica DFL-43]
          Length = 311

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 119/295 (40%), Gaps = 8/295 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+ F  V   GS + AA  L +S +  S +IS LE  +G++LF R  R L  T  G  
Sbjct: 5   DMLKTFVRVYELGSMSAAARDLRVSAAVSSSRISDLEKSLGVRLFNRTTRSLRATAHGEL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++   ++   +   +  + E + +P G L I+  + LG+ L+   +  F   YPDI ++
Sbjct: 65  FYKGAIKILDTIREVEGGIAEITAQPKGTLFISAPLALGKKLVAPLIPAFKAEYPDINVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +DI+ +  D A  L   +  S    R +        A+P Y+K    P + + 
Sbjct: 125 LRLSDRKVDIAQEGLDAAFVLGA-LPDSDFRVRAIHEFERVLVASPDYIKAHGMPQNGEA 183

Query: 186 L--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +  +KH  +      P   E F  L              L+ +    +  + + G GI  
Sbjct: 184 IITNKHKCLLL--RYPGATEFFWNLVVEGDIRAFHPQGSLESDDGDVLTAWALAGCGIVN 241

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V    D   LV +              YP       K+K F + +   +R
Sbjct: 242 KTRFDVAPHLDAGTLVEVATATPPVPQPFSCLYPHKRLQDPKIKLFIDHVIRGSR 296


>gi|94500748|ref|ZP_01307277.1| Putative transcriptional regulator, LysR family protein
           [Oceanobacter sp. RED65]
 gi|94427070|gb|EAT12051.1| Putative transcriptional regulator, LysR family protein
           [Oceanobacter sp. RED65]
          Length = 296

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 134/296 (45%), Gaps = 15/296 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +      SGS T AA  L +  + +SR IS LE E+   L  R  R L LTE+G  
Sbjct: 8   EDLEILLATIDSGSLTGAANALDIQVARVSRAISRLEAELDCSLLNRTTRKLELTEEGRV 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    L   +  L++   +P+G LR+        + +   L EF + +P I+++
Sbjct: 68  FSERVRQALQHLSHAESTLRDLKEQPAGILRVDAVTPFMIHQIIPLLPEFRIQFPLIELE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L+     ID+     D AIR+  P++ S+L  R L    +   A+  Y++    P SI E
Sbjct: 128 LVSSENIIDLIERRTDIAIRIG-PLKDSNLHARPLGRSPLSIVASHDYIERFGAPSSINE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN+I F     +     NW       I EP I   + ++   I   C+ G G+ALL 
Sbjct: 187 LANHNIIGFA----QSPHLNNWPIGTGINI-EPDI---KSSNGELIRHLCLEGQGLALLS 238

Query: 246 DYIVKDNP---NLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +++K++     L+ ++   +T +     V   + +    + ++ AF +FI  + +
Sbjct: 239 HFMIKEDLKNNRLIEVLPGSVTQNNNRERVNAVFYKNTALSSRILAFLDFIEPRLQ 294


>gi|212634664|ref|YP_002311189.1| regulatory protein LysR:LysR substrate-binding [Shewanella
           piezotolerans WP3]
 gi|212556148|gb|ACJ28602.1| Regulatory protein, LysR:LysR, substrate-binding [Shewanella
           piezotolerans WP3]
          Length = 295

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS + + L  FY VA+  S T AA++L +S+S +S+Q+  LE ++   L  R  R ++LT
Sbjct: 1   MSINLNLLMTFYTVAKHNSITLAADELLVSKSVVSKQLKKLEADLQCTLLQRTTRRMSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQN-LLQGNLKEFLLLY 119
           ++G  L    + +++++      +   +   SG L+I     L  +  L   +  F+ L+
Sbjct: 61  DEGKFLFDSYANIFNQINQCHDVIDRKNDTLSGLLKIRLPSVLEHDAHLMQAVSRFIGLH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
             I++++       D+  D  D A  + + +  SS+  RK+  I     A+P Y+K    
Sbjct: 121 NGIELEISYGYSLEDMISDRVDLAFHIGE-LTDSSMKARKIKNIGTRVVASPAYIKLNGS 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S ++L  H  + +   + K    F+        I     S ++ +S   +++      
Sbjct: 180 PSSPRDLAHHRCMNYRSCLTKDKWKFSQQDEEFEFIDIK--SSIRSDSESLLVEMASQDI 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GIA   D++ +    +  LV ++ED  T    ++  YP       K++ F + I 
Sbjct: 238 GIACALDFVCQTQLQSGALVSLLEDY-TWQTELHIVYPSHSVTPFKVRKFIDHIL 291


>gi|116696099|ref|YP_841675.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530598|emb|CAJ96945.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 300

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 131/295 (44%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L  F  V  +GS T AAEQL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTIDELLAFAAVVDTGSITAAAEQLKLTVSAASRTLGRLEEKLQTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+        +   ++  + ++    ++P G+LR+        +++   L+ F   YP
Sbjct: 61  EEGAAFLEHARAILAMVDEAEEQIAARRLRPVGRLRVDAATPFMLHVIVPLLEGFRASYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  +   ID+     D A R+ + ++ S+L  R + T  +   A+P YLK    P
Sbjct: 121 EVELELNSNEGIIDLIEKRTDVAFRIGQ-LKDSTLHARPIGTSRIRILASPGYLKRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H L+ F    P+ + D  W    D          +  +S  ++    + G G
Sbjct: 180 TKPAQLAQHALLGFTQ--PESLND--WPLRDDDGSVLHIKPTIASSSGETLRSLALNGQG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIF 291
           IA L D++ +D   +  LV++          ++   Y        ++  F  ++ 
Sbjct: 236 IACLSDFMTRDDRQDGRLVQLFAKQTLDVRQSINAVYYRNTALASRITCFVEYVV 290


>gi|237509831|ref|ZP_04522546.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|235002036|gb|EEP51460.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 291

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 123/296 (41%), Gaps = 17/296 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + ++L +F  V  +GS T AAE+L L+++ +S  +  LE EVG  L  R  R L +TE
Sbjct: 6   DVNLNRLAIFVAVVEAGSLTAAAERLGLAKTMVSAHVQRLEAEVGASLVVRTTRRLNVTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++    ET    +   +    G LR++  +D G  ++   L         
Sbjct: 66  AGRAFYDACRDILRATETALAAVAGDAGPLRGTLRVSAPVDYGALVVAPAL--------- 116

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +I+L  D++ +D+  D  D AIRL + +  S+    KL        A+P ++     P 
Sbjct: 117 -EIELQCDDRVVDLVRDNLDVAIRLGR-LADSNHRAAKLGGFERWLVASPAFVARHGAPA 174

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L     +    +    +E  N  A  +R     R      N+  +     + G G 
Sbjct: 175 SPEALGALPYVMLSTVPRTTLELAN--AHGERASVRCR-RAFASNTATACRAAVLAGGGF 231

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +   +   D+     LVR++     P   ++  +P A   + K++A  + +  + 
Sbjct: 232 GVATSFSSADDIAAGRLVRLLPGWSFPPGDIHAVFPSASHPSAKVRALIDMLKTRL 287


>gi|221209668|ref|ZP_03582649.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221170356|gb|EEE02822.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 299

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 119/296 (40%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T+
Sbjct: 4   DLNWERYRTFLAVLTEGSLSAAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +       +           G +RI+ +  +   +L   L +    +P 
Sbjct: 64  AALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPLLAQLRREHPG 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L+  ++  D+    AD A+R+  P Q + L+ R++  + +  YA   YL     P 
Sbjct: 124 LVIELVPTDRIQDVLNREADIAVRMASPSQDA-LVARRIGELEVALYARDDYLTRYGAPS 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++  L  H LI F  + P        L +  R         L+ +S L+ +     G GI
Sbjct: 183 TLDALAHHALIGFDTVTPFVRSAGRGLPSWTREAF-----ALRTDSNLAQLAMIRAGYGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 + + +  LVR++ D        +    E L+ + + +A  + +    R +
Sbjct: 238 GFCQSRLAQRDSRLVRVLPDGPAVKLETWVVMHEDLRASPRCRAVFDALANGLRAY 293


>gi|209884860|ref|YP_002288717.1| putative HTH-type transcriptional regulator YcjZ [Oligotropha
           carboxidovorans OM5]
 gi|209873056|gb|ACI92852.1| putative HTH-type transcriptional regulator YcjZ [Oligotropha
           carboxidovorans OM5]
          Length = 297

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 120/291 (41%), Gaps = 4/291 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  T+ G +L
Sbjct: 8   DLAAFVVVAEERSFTKAAARLGMAQSALSQIVRRIEERLGLRLLSRTTRSVAPTDAGERL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + H+L++    L E   +PSG +RI T     + +L   +K  L   PD+ +++
Sbjct: 68  LATLGPMLHELDSAIASLSELRDRPSGTIRITTVEHAAKTILVPAMKRLLTGNPDVTVEM 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  D  D  +RL   +    +  R    I M    AP Y +    P S  +L
Sbjct: 128 TIDYGLADVVADRFDAGVRLGGEMAKDMIAMRIGPDIPMAIVGAPDYFRTHPVPASPAQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I         +  +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHRAINLRLPTSGTLNSWR-LKRGGRDVRVRVEGPLILNTIDLILDAALDGHGLAYLPL 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              +   D   LVR++          +  YP     +         +  +A
Sbjct: 247 DQAQSYLDKGRLVRVLSKFTPDLPGYHLYYPHRRHASSAFTLLVETLRFRA 297


>gi|170020305|ref|YP_001725259.1| LysR family transcriptional regulator [Escherichia coli ATCC 8739]
 gi|300916452|ref|ZP_07133190.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
 gi|169755233|gb|ACA77932.1| transcriptional regulator, LysR family [Escherichia coli ATCC 8739]
 gi|300416253|gb|EFJ99563.1| LysR substrate binding domain protein [Escherichia coli MS 115-1]
          Length = 299

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|149188029|ref|ZP_01866324.1| Hypothetical transcription regulator [Vibrio shilonii AK1]
 gi|148838017|gb|EDL54959.1| Hypothetical transcription regulator [Vibrio shilonii AK1]
          Length = 304

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 142/305 (46%), Gaps = 15/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    DK+  F  V R+GSF+ AA+Q  +S S+ SR I+ LE  VGI L  R  R +  T
Sbjct: 1   MEL-LDKIVYFLHVVRTGSFSLAAKQYGISASAGSRWIAELEESVGISLLKRSTRKVVPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L+   S+V  ++E    E+Q  S    G +RIA+T    ++ L   + E+L  +P
Sbjct: 60  QAGLRLYERFSQVNTEIEDIFTEIQNLSNDDRGVIRIASTPLFARDYLGKIVGEYLRYHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-----RKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
            +  +++    D+D   +  D A+R          + S L++R L+   +    +P Y++
Sbjct: 120 HVTFRVMETAFDMDHVNE-VDFAVRASAIYDGFQEKDSLLVKRSLLKHPLIVCCSPAYIE 178

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQY 234
              EP++ ++L++HN +    L+        W+   D  +    I+  ++V     I   
Sbjct: 179 KYGEPMTPEDLNRHNCLYASTLVGGN----KWVFERDGEMTAVDIAQTVEVEDSQFIKTV 234

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G GI  LP  ++++      LV I+++     F     Y    +   +   F+ ++ 
Sbjct: 235 AINGGGIGYLPLSLIEEELEQGVLVPILKEYTNSDFEFSLYYRPRRQMPVRCVNFKEYLI 294

Query: 292 LKARD 296
            + R+
Sbjct: 295 RRVRE 299


>gi|26247664|ref|NP_753704.1| putative transcriptional regulator YcjZ [Escherichia coli CFT073]
 gi|170681201|ref|YP_001743847.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|215486626|ref|YP_002329057.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218689318|ref|YP_002397530.1| putative nucleic acid-binding regulator [Escherichia coli ED1a]
 gi|218704847|ref|YP_002412366.1| putative nucleic acid-binding regulator [Escherichia coli UMN026]
 gi|227886235|ref|ZP_04004040.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|293409721|ref|ZP_06653297.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300897384|ref|ZP_07115811.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300971657|ref|ZP_07171530.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|301017579|ref|ZP_07182253.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|312966740|ref|ZP_07780958.1| uncharacterized HTH-type transcriptional regulator ycjZ
           [Escherichia coli 2362-75]
 gi|331646658|ref|ZP_08347761.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M605]
 gi|331672856|ref|ZP_08373642.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
 gi|26108066|gb|AAN80266.1|AE016760_125 Hypothetical transcriptional regulator ycjZ [Escherichia coli
           CFT073]
 gi|170518919|gb|ACB17097.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
 gi|215264698|emb|CAS09070.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218426882|emb|CAR07737.2| putative nucleic acid-binding regulator [Escherichia coli ED1a]
 gi|218431944|emb|CAR12829.1| putative nucleic acid-binding regulator [Escherichia coli UMN026]
 gi|222033133|emb|CAP75873.1| Uncharacterized HTH-type transcriptional regulator [Escherichia
           coli LF82]
 gi|227836439|gb|EEJ46905.1| LysR family transcriptional regulator [Escherichia coli 83972]
 gi|281178520|dbj|BAI54850.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|284921202|emb|CBG34268.1| LysR-family transcriptional regulator [Escherichia coli 042]
 gi|291470189|gb|EFF12673.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300358868|gb|EFJ74738.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|300400073|gb|EFJ83611.1| LysR substrate binding domain protein [Escherichia coli MS 69-1]
 gi|300411143|gb|EFJ94681.1| LysR substrate binding domain protein [Escherichia coli MS 45-1]
 gi|307553390|gb|ADN46165.1| transcriptional regulator [Escherichia coli ABU 83972]
 gi|312288204|gb|EFR16106.1| uncharacterized HTH-type transcriptional regulator ycjZ
           [Escherichia coli 2362-75]
 gi|312945965|gb|ADR26792.1| putative nucleic acid-binding regulator [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315295360|gb|EFU54690.1| LysR substrate binding domain protein [Escherichia coli MS 153-1]
 gi|315297248|gb|EFU56528.1| LysR substrate binding domain protein [Escherichia coli MS 16-3]
 gi|320195657|gb|EFW70282.1| LysR family transcriptional regulator YcjZ [Escherichia coli
           WV_060327]
 gi|323187563|gb|EFZ72872.1| hypothetical protein ECRN5871_4388 [Escherichia coli RN587/1]
 gi|330911195|gb|EGH39705.1| LysR family transcriptional regulator YcjZ [Escherichia coli AA86]
 gi|331045410|gb|EGI17537.1| putative transcriptional regulator LYSR-type [Escherichia coli
           M605]
 gi|331070077|gb|EGI41446.1| putative transcriptional regulator LYSR-type [Escherichia coli
           TA280]
          Length = 299

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|298294193|ref|YP_003696132.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296930704|gb|ADH91513.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 298

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 131/294 (44%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + V   V  +GS +  A +L    +++SR++  LE  +G++L  R +RGL LTE+G 
Sbjct: 4   FEAMSVLLTVVEAGSLSAGARRLRAPLATVSRKVGELEKHLGVRLVQRTSRGLVLTEEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                +  +  +L+  + +         G L +   I  G+  +     EFL  +P+I +
Sbjct: 64  TFVAASRRILEELDAAERQAAGDHGALRGGLHVTAPIAFGERHVLPIALEFLKEHPEIDL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ + ++ ++ D A+R+   ++ S+LI  ++  +     A+P YL     P    
Sbjct: 124 RLTLADQQVRLADEHIDVALRIGH-LEDSALIATRVGAVRRVICASPAYLARRGIPRQPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ I+F          +   +        P+     VN+  + +Q  + G GI  +
Sbjct: 183 DLAEHDGISFQGFATAPEWRYRRDSPAFAVEPRPK---FAVNTTNAAIQAALAGVGIIRV 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y V ++     L  ++ +       V   +  A     K+++F ++   + R
Sbjct: 240 LSYQVSEHLRSGELQELLTEFAPEPLPVSLIHAPADPLGRKVRSFLDWTAPRLR 293


>gi|239831902|ref|ZP_04680231.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239824169|gb|EEQ95737.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 308

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 129/292 (44%), Gaps = 12/292 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  SF+ AAE+L L+Q ++SRQI+ LE ++G  LF R +R + L++ G   
Sbjct: 14  ALAAFDAVARHESFSAAAEELSLTQGAVSRQIATLEEQLGTALFDRTSRHVVLSDAGRAY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +V       +    +++          L +A     G   L   +  F+  YPDI +  
Sbjct: 74  LKVVGPALASIRAASLQVMSQMRGT--TLNLAFLPTFGTRWLIPRIPRFVAKYPDIILNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   +  D AI + +P    +     L+   +    +P +L+      +  +L
Sbjct: 132 ATRIGQFDFDREGLDAAIHIGQP-DWPNADSVFLMDETVAPVCSPAFLQQHPV-QAPTDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               L    ++  +     +W  ++D  I  P    ++   + ++ Q C+ G G+AL+P 
Sbjct: 190 LPLPL---FNMASRPGAWDHWFKSLD--IAAPVSPGMRFEQFSNVSQACIAGLGVALMPL 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++++   +N  LV      +    + YF  P+A  +T  + AFR+++  + +
Sbjct: 245 FLIRAEIENGQLVVACPHTVRSPSSYYFVTPKARSSTPAVSAFRDWLLAEIK 296


>gi|221198149|ref|ZP_03571195.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221208360|ref|ZP_03581363.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221171773|gb|EEE04217.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221182081|gb|EEE14482.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 303

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL   P+
Sbjct: 61  EGAAFLERCRGLLSEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLADKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 MQLSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPDYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L KHN + F     +  ++  W       I   R++  L  N    + ++   G G
Sbjct: 180 SLDDLLKHNCLAFNL---QGGQNRGWYFQRHGKIVTMRVTGNLDCNDGELLHRWVAEGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + +    +   L  ++++   P + +   YP+      +++ F +++
Sbjct: 237 LGWRSTWEIAAQLETGELETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|169632451|ref|YP_001706187.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169151243|emb|CAO99929.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii]
          Length = 298

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 134/297 (45%), Gaps = 10/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + +F V      F+ AA++L+L +S+IS++++ LE ++G+ L YR +R   L+E G
Sbjct: 6   NLNDVYLFVVAVEHQGFSAAAKRLNLPKSTISKRVAILEKKLGLTLIYRSSRSFVLSEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++       +    +  L     +PSG +R++ ++ + Q LL   L E    YP + 
Sbjct: 66  KLFYQHAKNAVDEFRYAEENLLIQQQEPSGVVRLSASVPIAQYLLSDCLPELAERYPKLL 125

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+ + ++ +D+  +  D  IR   +P+  S LIQR L    + A AAP YL       +
Sbjct: 126 LQVEVTDRYVDVMSENFDIVIRSHFQPLPDSGLIQRVLKNDKIIAVAAPTYLMKSSPIHT 185

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L KH  I     + P   ++ N    + RP           N    +      G GI
Sbjct: 186 PEDLLKHEGIWSELQMNPWHFQNINGQKEIVRPNI-----RFVANESEILKGAAKRGLGI 240

Query: 242 ALLPD-YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LLP+ + +K+    +L+ ++ D    S T              +    +F+  K +
Sbjct: 241 TLLPETFCMKELSEGSLIHVLPDWSAGSVTTSLLMLTRRGLLPSVNITADFLVEKLK 297


>gi|167566326|ref|ZP_02359242.1| LysR-family transcriptional regulator [Burkholderia oklahomensis
           EO147]
          Length = 306

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 131/302 (43%), Gaps = 13/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G
Sbjct: 3   SLDRFDVFRAVVEAGSFTGAANVLNQARAAVSFNVKQLEAELGVTLLTRTTRRVALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++    V  + E    E +       G LR+ +T++    ++   L+EF   +P ++
Sbjct: 63  ERFYKRCLRVLAEAEEAIDEARGEHGGMRGSLRVTSTVEYALKVVAPALREFTSQHPALR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR--KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL   +  Q        L T  +    +P  L       
Sbjct: 123 VRLETHTSQADLVRDRFDVAIRLGRFEQFQDLPYRGVCLDTYDVRPVVSPALLAERGVVR 182

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S   L     +    L       + D      V RP  +P+   +  ++   +  +  
Sbjct: 183 IESPDALACLPQLGHSRLSQVASWLLRDREGREHVFRPAAKPQ---MVADNASVLRAFAQ 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GSG+ALLP+++V+D+     L+  + D   P  +VY  YP       K++A+ +F+   
Sbjct: 240 QGSGVALLPEWLVRDDLDNGTLIDALPDYRFPPQSVYALYPSTRHVPQKIRAWIDFMKRY 299

Query: 294 AR 295
            R
Sbjct: 300 VR 301


>gi|160901270|ref|YP_001566852.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366854|gb|ABX38467.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 305

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 117/290 (40%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR GSFT AA  L ++QS++S+ +  LE  + I+L  R  R ++ T  G
Sbjct: 13  NLNDLLAFVTVAREGSFTRAAAALGVTQSALSQTVRALEERLQIRLLTRTTRSVSPTAAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +     + ++E     L     KP G +RI     + Q+ L   L   LL YPDI 
Sbjct: 73  ERLMQAIGHRFDEIEAELDALTALRDKPGGTVRITCGDYMLQSTLLPRLAPLLLAYPDIC 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  +     DI  +  D  +RL   I    +       + M   ++P Y      P + 
Sbjct: 133 MEFDVYYGFRDIVAERFDAGVRLGSTIDKDMIAVPIGPPLRMAVVSSPGYFAEHGIPKNP 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H  I    +    +  +       R +       L  N+    +   + G GI L
Sbjct: 193 QDLMAHRCINQRMVTSGGLYVWE-FERRGRKMNVRVDGPLIFNTTQPQIDAYLAGLGITL 251

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+  V     +  L R++ED        +  YP   + +       + +
Sbjct: 252 LPEDEVMPWIQSGQLQRVLEDWCPRFDGHHLYYPSRRQPSPAFSLVVDAL 301


>gi|330448663|ref|ZP_08312311.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492854|dbj|GAA06808.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 303

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 126/303 (41%), Gaps = 13/303 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---L 57
           +    + L+ F   AR  SF+ AAE+L+++ +++ + +  LE  +   LF+R   G   L
Sbjct: 3   LPIHLNALKAFEASARHQSFSAAAEELNVTPAAVGQLVRTLEEWLDTPLFHRTNSGKIRL 62

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             TE   +        + KL      LQ+S     G L +  +       L   L  F  
Sbjct: 63  MPTETAERALPDIRAGFDKLSQGLELLQQSPT--CGILTVTVSPAFAAKWLLPRLDRFQT 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           L PD  ++L  + K ID ++   D  +R         L+  KL+   +    +P  L+  
Sbjct: 121 LCPDTDVRLDTNLKPIDFAIQRVDIGVRYGTG-NWQGLVAEKLMDEEVFPVCSPRLLEQP 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYC 235
                 ++L +  LI     + +      W A +++   E   S   +Q+N+  +++Q  
Sbjct: 180 ERLSLPEQLLQETLIH-DLSMDEHTGFPTWSAWLEKAGVEKHQSAHNIQINNSAAVLQTA 238

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + G GIAL    +VKD+     LVR+  +         +  Y        K + FR+++F
Sbjct: 239 IDGGGIALARSVMVKDDLAAGRLVRLFPEFQFESPLAYFVVYKPESTELAKTQMFRDWLF 298

Query: 292 LKA 294
            +A
Sbjct: 299 TEA 301


>gi|261316325|ref|ZP_05955522.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|265987395|ref|ZP_06099952.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|261295548|gb|EEX99044.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|264659592|gb|EEZ29853.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
          Length = 293

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 133/284 (46%), Gaps = 7/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+    P S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTPKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L++H L  + + +       N        I        +V+S L  ++    G+GI 
Sbjct: 180 PEDLNRHRLTGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 235 ILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 277


>gi|256061854|ref|ZP_05451989.1| Transcriptional regulatory protein, LYSR family [Brucella neotomae
           5K33]
          Length = 301

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 7/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT 
Sbjct: 8   AMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTH 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD
Sbjct: 68  AGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPD 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+      
Sbjct: 128 LTIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTLK 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++L++H LI + + +       N        I        +V+S L  ++    G+GI
Sbjct: 187 SPEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGI 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 242 GILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 285


>gi|254225854|ref|ZP_04919457.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125621581|gb|EAZ49912.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 295

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I++QLI       +   + D  I R  + + S S     L       YA+P YL     P
Sbjct: 121 IRVQLITT-TPGQLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++QEL +HN++ +G+      + F  + T                +  ++      G G
Sbjct: 180 QTLQELTEHNVLCWGE------QTFREVKTAQGKRLT-LTGNFATTNPEALFYAGKAGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I +    ++K+     NLVR++ DV     TVY  YP+      + + F + +  K 
Sbjct: 233 IIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPKLEYQHTRTQLFLDHLKQKL 289


>gi|332992516|gb|AEF02571.1| LysR family transcriptional regulator [Alteromonas sp. SN2]
          Length = 310

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 131/296 (44%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L V   VA   S T AA  L +  ++ S  +  +E+ +G  LF R  R L L+  
Sbjct: 1   MLLEDLIVILKVAEFRSITAAASSLDMRTATASAAVKRVESTLGSDLFIRTTRSLRLSAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +   V  +    LE  +  LQE +    G+LRI  + DLG+N++   L  F+  +  I
Sbjct: 61  GERYLPVCEQAITMLEHAKQNLQEDTGNIEGELRIGLSSDLGRNVIAPWLNRFMDEHTGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L + +ID   D  D A+R   P   +SL   K+  +     A+P YLK    P +
Sbjct: 121 SMKLHLSDSNIDFYRDPVDIALRYGSP-NDASLYGFKICEVPRLLVASPAYLKQHGTPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L KHN + +   +   + +   L   ++P+          N    + ++CV G G+A
Sbjct: 180 LEDLPKHNGLFY--QLHDIIYNEWELTRNNQPVKIKMQGNRAANDGDMVRRWCVNGHGLA 237

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +     + D+      V +M D I     ++   P     T  ++  R+ +  + +
Sbjct: 238 VKSSLDMCDDLLNNRAVALMPDYIVKPTQLWLICPSRQSITPAVRLLRDTLRTQCQ 293


>gi|149908487|ref|ZP_01897149.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149808321|gb|EDM68258.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 301

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 136/295 (46%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D + L  F  +   GS   AA+ L +   ++SR +  LE  +G+KL  R A  + LT+
Sbjct: 3   SIDLNSLAWFCKIVEQGSIQAAAQLLLVPAPTLSRHLKQLEQRLGVKLLNRSAHVMELTQ 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + ++      + ++   ++L+  +V  +G +R++    +  + L   L EF+  YP 
Sbjct: 63  EGQRYYQGLHASINAIDEALLQLENDNVSLTGMIRLSAPNSVINSYLNLWLIEFMQTYPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +L     D    ++  D A+ +  P + +  +Q++L +      A+P YL   R   
Sbjct: 123 VKCELNTALDDNQAILEGVDLALTV-YPSKQADWVQKRLFSRTFCVVASPEYLILARALD 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L +H+L+            + ++   D  +  P    +  N   +I+  C+ G GI
Sbjct: 182 NPTMLSEHHLLG-----SNSDHQWVFINGDDSTVVSPSFRYIN-NDVHNILAACLQGLGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +P++ ++ +     LV+++ D   P   +Y  YP+ +    +++   +F+  K
Sbjct: 236 CCVPEFFIRQHIGKGRLVQLLTDYQLPERGLYMTYPDRVLLPLRVRRLIDFLTEK 290


>gi|153009501|ref|YP_001370716.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561389|gb|ABS14887.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 304

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 129/293 (44%), Gaps = 14/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  SF+ AAE+L L+Q ++SRQI+ LE ++G  LF R +R + L++ G   
Sbjct: 14  ALAAFDAVARHESFSAAAEELSLTQGAVSRQIATLEEQLGTALFDRTSRNVVLSDAGRVY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        +    +++          L +A     G   L   +  F+  YPDI +  
Sbjct: 74  LKAVGPALASIRAASLQVMSHMRGT--TLNLAFLPTFGTRWLIPRIPRFVAKYPDIILNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQE 185
                  D   +  D AI + +P    +     L+   +    +P +L+    P+    +
Sbjct: 132 ATRIGQFDFDREGLDAAIHIGQP-DWPNADSVFLMDETVAPVCSPAFLQQN--PVHVPAD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L    ++  +     +W  ++D  I  P    ++   + ++ Q C+ G G+AL+P
Sbjct: 189 LLPLPL---FNMASRPGAWDHWFKSLD--IAAPVSPGMRFEQFSNVSQACIAGLGVALMP 243

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++++   D+  LV      +    + YF  P+A  +T  + AFR+++  + +
Sbjct: 244 LFLIRAEIDSGQLVVACPHTVKSPSSYYFVTPKARSSTPAVSAFRDWLLAEVK 296


>gi|206560312|ref|YP_002231076.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198036353|emb|CAR52249.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 303

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL   P+
Sbjct: 61  EGAAFLERCRGLLSEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLSDKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 MQLSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPDYFRKHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L KHN + F     +  ++  W       I   R++  L  N    + ++   G G
Sbjct: 180 SLDDLLKHNCLAFNL---QGGQNRGWYFQRHGKIATMRVTGNLDCNDGELLHRWVAEGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     + +    +   L  ++++   P + +   YP+      +++ F +++   
Sbjct: 237 LGWRSTWEIAAQLETGELETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYLRAA 292


>gi|170721926|ref|YP_001749614.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759929|gb|ACA73245.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 300

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 123/293 (41%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A  QL + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  + E     +   S +P G+LR++  + L    L   +  FL LYP +Q
Sbjct: 63  ERYLHHCQAMLLEAEAADEAVASMSSEPRGRLRVSCPVALAHAFLPDVISRFLELYPQVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++L N+ +D+  +  D A+R+R+   +  +L+ R+L    M   AAP +  + REP  
Sbjct: 123 LDMVLLNRRVDLISEGIDVALRVRELGDEDPALVTRRLRQAQMQLVAAPGFADHVREPSE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L        G      +  F  L    R         L ++ ++        G G  
Sbjct: 183 LASLP-----VLGAAEADRLVHFRLLGPNGRQQEIALEPRLAIDDFVVRNAAVRAGLGFT 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP    +   +   LVR++ D   P   +   YP        ++ + + +  
Sbjct: 238 ALPSMFCEHELERGELVRLLPDWSLPGGYLQAVYPHRRGLLPAVRVWIDHLAA 290


>gi|332530437|ref|ZP_08406380.1| transcriptional regulator, LysR family protein [Hylemonella
           gracilis ATCC 19624]
 gi|332040097|gb|EGI76480.1| transcriptional regulator, LysR family protein [Hylemonella
           gracilis ATCC 19624]
          Length = 298

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 127/293 (43%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V + GS + AA +L L+Q ++ R IS LE  +G+ LF R   GL  T+   
Sbjct: 7   WELYRTFLAVLQEGSQSGAARELGLAQPTVGRHISALEESLGVTLFTRSQTGLLPTDLAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      ++      +   +       G +R++ +  +G  +L   L      +P ++I
Sbjct: 67  SLREDLEAMHSTAAALERNARGLGAGIRGAVRVSASEVMGVEVLPPILVALREQHPGLEI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L NK  D+    AD A+R+  P Q   L+  ++  + +  +A   Y+    +P  + 
Sbjct: 127 ELVLSNKVQDLVRREADIAVRMTSPQQD-VLLATRVGEVPVGLFAHQSYIAAHGQPEHMA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H LI F    P     F   A+  +P+ +      + +S L+       G+GI   
Sbjct: 186 DLAQHTLIGFDQETP-----FIRAASERQPLWKRENFAWRCDSDLAQRALLRAGAGIGAC 240

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              + +    LVR++ D      T +    E L+   + +A  + +    R +
Sbjct: 241 QVELARRESELVRVLADQFVFPLTTWVVMHEGLRANPRFRAVYDALVTGLRRY 293


>gi|326554347|gb|ADZ88986.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 304

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 128/297 (43%), Gaps = 10/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L+
Sbjct: 1   MIPDIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G K       + ++ E T +    S+   S    IAT    G   L   + +F+  +P
Sbjct: 61  DAGRKFLPEVRRLLNQTEDTMLRAMASAQSTS-SFSIATLPTFGTRWLMPRILDFVEKHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + +   +   D      D AI   +P+ + +     L +  +   A+P  LK  R P
Sbjct: 120 GIALNVASRSGVFDFEEQPFDLAIHYGQPVWAHA-TCTFLCSEVIVPVASPSLLKTRR-P 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL+   L+    L  +      W  +     G+      +   +  ++   + G G
Sbjct: 178 ASPEELENEPLLH---LATRPKMWAQWFESCGVE-GQSAYRGHRFEQFSMVIGAALAGLG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ALLP Y+++    +  LV + E  +      Y   PE        + F  +I  + 
Sbjct: 234 FALLPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEGKLENPLTQVFCQWIAGQV 290


>gi|299534125|ref|ZP_07047477.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718034|gb|EFI59039.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 321

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 140/294 (47%), Gaps = 5/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +  F +V  +G FT AA++L +++S++ + ++ LE  +G +L  R+ R  TLT +G 
Sbjct: 7   LEGVSTFVLVVEAGGFTAAAKRLGVTRSAVGKAVARLEARLGSRLLQRNTRTQTLTAEGQ 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +    +L+  + +L    ++P G+LR++     GQ  +   L     LYP + I
Sbjct: 67  IYYERCTRALKELDAAEADLDSGRMEPIGRLRVSVPEGFGQLCVAPILLNLTRLYPQLSI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++ +D+  +  D AIR+     S +L  R L T H+   A+P YL     P  ++
Sbjct: 127 DLSFGDRTVDLIEEGFDLAIRIGPMQDSGTLSARLLGTQHISIGASPAYLARHGTPGKLE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPI--GEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ELD H +I++         + + +A  D  +       + + ++   +I    V G GIA
Sbjct: 187 ELDGHAVISYSHSGVVAPWNVSPVAGRDGSLDYRLQVRTQISMDDIQAIAAAAVAGYGIA 246

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P +++        LV I+      S+ ++  +P+A +   KL+   + +  +
Sbjct: 247 WVPCWLLSSYAKRGELVHILPAYRARSYEIHALWPQARQLRCKLRVAIDALVAE 300


>gi|209518408|ref|ZP_03267231.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501129|gb|EEA01162.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 301

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 142/296 (47%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V  SG+FT AA+ +++ +SS++R I  LE E+G++L +R +R LTLT+
Sbjct: 1   MDKLAAMQTFVRVVDSGTFTRAADLMNVPKSSVTRLIQELEKELGVRLLHRTSRQLTLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   +  +  V  ++ +    +  ++  P GK+R+     L   L+   + +F   YPD
Sbjct: 61  EGQIYYEGSIRVLDEVGSLDGSVLSATRSPKGKIRVELPGSLAYQLVLPAMPDFFARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q++L + N+ +D+  +  DC +RL  P+ S SLI R   T+ +   A+P Y++    P 
Sbjct: 121 VQVELSVGNRSVDLIAENLDCVLRLG-PLLSDSLIARSAGTLPLVTCASPAYIERHGLPR 179

Query: 182 SIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
              +L + H ++      P+   DF +    D  + E   +  L VN   + +   + G 
Sbjct: 180 EPADLMQGHTIVRMNS--PRSGRDFAFQLRRDEQLFEIHGNHRLSVNDSSAALAAGLAGL 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+     ++V  +     LVR+  D       V+  YP       K++ F  +   
Sbjct: 238 GVLTTYAFLVAPHLRAGALVRLFPDWRGDDIAVHVAYPANRHLASKVRVFVEWAIE 293


>gi|119471060|ref|ZP_01613619.1| putative transcriptional regulatory protein (LysR family)
           [Alteromonadales bacterium TW-7]
 gi|119445900|gb|EAW27181.1| putative transcriptional regulatory protein (LysR family)
           [Alteromonadales bacterium TW-7]
          Length = 305

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 15/303 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +GSFT AA++  +  SS+SR+++ LE  +G  L  R  R + LTE
Sbjct: 1   MDQLKAIRYFIKVVDTGSFTKAAKEFGVPPSSLSRRVADLEKSLGATLLKRSTRIVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++  +L  +   ++     P G+L I+  +  G  +L   L EF  LYP 
Sbjct: 61  VGRIYYNDVQQILGQLAQSHETVKSYQTTPMGRLSISCMVGFGDKILMPLLDEFSALYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + L ++   +  D  D AIR      +  ++  KL+       A+P YLK   EP 
Sbjct: 121 IILDVSLSDELSTLGRDDVDIAIR-GGYAPNERVLAIKLMDNEFIPVASPSYLKEYGEPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
            + EL  H  + +            WL  ++    +     + + N+   + +    G G
Sbjct: 180 HVLELKDHVGLYYKTPSGPT----PWLCKINEQWHDVSAPAIAISNNGPWLAKKACNGEG 235

Query: 241 IALLPDYIVKD---NPNLVRI-----MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I +   + ++    +  L  +     +         VY  Y +      K+KA  +F+  
Sbjct: 236 ILMSTRWALESYLGSGELKELKFEHTLAITQNAKMAVYLLYQKQRYLVPKVKAAVDFLVQ 295

Query: 293 KAR 295
           K +
Sbjct: 296 KLQ 298


>gi|16263343|ref|NP_436136.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|307304349|ref|ZP_07584100.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307322394|ref|ZP_07601752.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|14524025|gb|AAK65548.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|306891954|gb|EFN22782.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306902551|gb|EFN33145.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 317

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 125/299 (41%), Gaps = 13/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L     +AR G+F  AA  L +S +++S  IS LE  +G++LF R  R ++LT+ G
Sbjct: 21  NLKELEAVIAIARRGTFRAAAIDLGMSTTALSHTISRLEAALGVRLFNRTTRSVSLTDAG 80

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +  +     L      ++     PSG +RI       + ++   + +FL  YPD+ 
Sbjct: 81  RLFVQQVAPSLQDLYAALDSVRSQRETPSGTIRINAAPFAARAIISPLVLQFLRRYPDMN 140

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREPLS 182
           + ++ + K +DI  D  D  +R+   +  S +I   L     H    +P Y +   +P+ 
Sbjct: 141 VDIVTEGKMVDIVKDGFDLGVRVAG-LVPSDMIALSLGRPQRHAVVGSPKYFEQHGKPIV 199

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +L  H  I    +       F W    D    +  +   + ++    +    +  +G+
Sbjct: 200 PPDLLNHRCI---RVRLPDGSLFRWRFEKDGETLQIDVRGPITLDEASIVRTAVLESTGV 256

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               +  V  +     LVR++ED   P   +   YP     +  ++AF       AR++
Sbjct: 257 GYTMEQEVLPDIKAGRLVRVLEDWTPPYPGLCLYYPGRRNLSAGIRAF----LELAREF 311


>gi|330806728|ref|YP_004351190.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327374836|gb|AEA66186.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 316

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 118/295 (40%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   +  R F   AR  SFT AA +L  +Q +IS+QI  LE ++G +LF R  RG+ LTE
Sbjct: 7   NLSLELFRAFEAAARQQSFTAAAIELGTTQPAISQQIKRLEEQLGTRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L          ++     +          L++AT        L   L  F    P 
Sbjct: 67  AGTILFEQVQAGLQSIDAGLSAITAQHQHE--VLQVATDFAFAAYWLMPRLHRFHAANPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   ++ ++     D A+             R L +  +    +P  LK+   PL
Sbjct: 125 VDVSLVTSERNHNMLRTDIDVAVLFGDGRFKQG-ESRWLFSEEVFPVCSPLLLKDRPLPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S Q L +  L+           +++ +         P    L+ ++Y  ++Q  + G G+
Sbjct: 184 SAQALAEFPLLHLRAGNSNSWFEWSGVFRELGITSPPAPGQLRFDNYTLLIQAAIGGQGV 243

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V +      L R + + +      Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWRHLVDNLLAQGLLCRPIAETVLSRLGYYVVLPQRKRRGVLIRQFVDWLMEE 298


>gi|291618650|ref|YP_003521392.1| GcvA [Pantoea ananatis LMG 20103]
 gi|291153680|gb|ADD78264.1| GcvA [Pantoea ananatis LMG 20103]
          Length = 313

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 16  LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 75

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F L YP I +
Sbjct: 76  SYYLDIKEIFSALNEATRKLQARSA--KGALTVSLLPSFAIQWLVPRLSSFNLAYPGIDV 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D AI   +      L   KL   ++    +P  +       +  
Sbjct: 134 RIQAVDRDEEKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPALMTGENPLKTPM 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L +  L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 193 DLARFTLLH--DASRRDWQSY------IRQLGVQHINVQQGPIFSHSAMVLQAAIHGQGV 244

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   L+    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 245 ALANNVMAQSEIEAGRLICPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 300


>gi|301632020|ref|XP_002945089.1| PREDICTED: uncharacterized HTH-type transcriptional regulator
           yafC-like [Xenopus (Silurana) tropicalis]
          Length = 303

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 123/294 (41%), Gaps = 6/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D L +F  +A  GSF+ AA +  L +S++SR+I+ LE  +G +L  R +R L LT
Sbjct: 1   MTTTADDLILFAHIAACGSFSAAARRAGLPKSTLSRRIAALEASLGERLLTRGSRTLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  +      +  ++       Q   + P+G+LR++   +  +  L   L+ F+  Y 
Sbjct: 61  EFGEGVFHHGQRLLDEMAAVNALAQSRQITPAGRLRVSLPPEFHELSLLPILQTFVQRYA 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +Q++L +    +D+   + D A+R+   +    SL+ R L  +    YA+P YL     
Sbjct: 121 QVQLELDISPHRVDLRAGHFDLAVRVAGSLPDDASLVARPLTQLPHGLYASPAYLAVHGM 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H  I    +          L      +       +  NS        V   
Sbjct: 181 PDTPADLARH--IGLPLITSDGQMQSWTLTRGQERLDIMPAGPVAANSISLQSALAVGAM 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L +           L R++     P+FT +            ++ F +++
Sbjct: 239 GIAGLSERFAAAMVQQGVLQRVLPQWQLPTFTAWAVTQGRRLLPLHVRVFIDWM 292


>gi|71734169|ref|YP_273972.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554722|gb|AAZ33933.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 302

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 133/296 (44%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  +  SGS + AA+    S +S+ R ++ LE+ +G++L  R  R + LT+
Sbjct: 1   MDRLKAMANFARIVDSGSLSSAADVTGQSVASLVRSLAALESHLGVRLLNRSTRRMALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +  R T  +    +  +  L        G LR+   ++ GQ  +   +  FL  + D
Sbjct: 61  EGEEYLRWTRRMLADFDDMEQRLDGRDGIVRGLLRVTAPVEFGQRYIAPLVNAFLSEHQD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L+++ + +  +  D A+R+   +  S+++ R++    + + A+P YL+      
Sbjct: 121 INVELNLNDQIVPLLDERLDLALRIGH-LPDSAMVARRIGATRLVSCASPGYLRTAPLLD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L +H  IT      +      +     + + +     L  N   +    C+ G G+
Sbjct: 180 TPKSLPEHACITLASHGRQW-----YFRHQGKELIQDITPRLVCNQVRAASLACIQGLGV 234

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             L  Y V D   +  L+R++ +  T    +   YP AL+ + ++KAF  +   + 
Sbjct: 235 TRLIHYQVADELADGRLIRVLNNFETADLPIQLVYPHALQLSPRVKAFVEWAIPQL 290


>gi|327395030|dbj|BAK12452.1| glycine cleavage system transcriptional activator GcvA [Pantoea
           ananatis AJ13355]
          Length = 305

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 17/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F L YP I +
Sbjct: 68  SYYLDIKEIFSALNEATRKLQARSA--KGALTVSLLPSFAIQWLVPRLSSFNLAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D AI   +      L   KL   ++    +P  +       +  
Sbjct: 126 RIQAVDRDEEKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPALMTGENPLKTPM 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L +  L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLARFTLLH--DASRRDWQSY------IRQLGVQHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL  + + +   +   L+    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 237 ALANNVMAQSEIEAGRLICPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKA 292


>gi|293414655|ref|ZP_06657304.1| LysR family transcriptional regulator YcjZ [Escherichia coli B185]
 gi|291434713|gb|EFF07686.1| LysR family transcriptional regulator YcjZ [Escherichia coli B185]
          Length = 299

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 120/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSILGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|269962264|ref|ZP_06176617.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833095|gb|EEZ87201.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 307

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 141/292 (48%), Gaps = 8/292 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  +KL +   V+++GSF  AA+++++ +S +S+ I  LE  +G++L  R  R L++T+
Sbjct: 1   MDLANKLELLLEVSKAGSFAKAADRMNMDRSVLSKHIKQLEEYLGVRLVNRTTRSLSMTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++     ++   L+ T+          SG L+I+++   G+  LQ  ++ FL  +P 
Sbjct: 61  IGLQVIEKAEQISTLLDETKQLTSSFQTDLSGNLKISSSTMFGRQYLQPAIQRFLEQFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             I+L+LD+  +D+  +  D A R+  P++ S+L+ ++L    +   A+  +++   EP 
Sbjct: 121 ASIELLLDDHHVDVVGNNFDIAFRIG-PMRDSTLVAKRLAENKVAIVASQSFIEKHGEPK 179

Query: 182 SIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + Q L     I + +      +  F      D+       S  +VN    I++    G G
Sbjct: 180 TPQALSLLPSIVYANGNFNADKLKFISKTEPDQLDVYSMTSAYRVNEPELIIESAKAGLG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRN 288
            A +  ++V    ++  LV+++ D   P+   +Y  Y      +  LK F +
Sbjct: 240 YAQIGQFMVHGELESMGLVQLLADYDIPTHGDIYAMYTHRQH-SPLLKEFID 290


>gi|317048749|ref|YP_004116397.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950366|gb|ADU69841.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 319

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 121/293 (41%), Gaps = 13/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VAR  SF+ A  +   + SSI RQI  LE  +   LF R  R LTLT+ G  L 
Sbjct: 23  LGVFVDVARESSFSAAGRRRGRTPSSIGRQIDALEAHLDTPLFLRSTRHLTLTDAGEALL 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L   Q EL     + +G LR+A     G+  +   + E    +PD++++L 
Sbjct: 83  IRARQILDSLVDVQQELASMKGEVTGILRVACYPTFGKRYVLPVMGELARQHPDLRLELD 142

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D   +  D  IR+   +  S+LI  ++        A+P YL     P S+ +L+
Sbjct: 143 LTERLADPVAERLDLVIRIGD-MADSTLIGSRIAMQTRVLCASPAYLAQQGMPASLTDLN 201

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
            H LI          +   W A +  P      +     + +  +    V G GIA LPD
Sbjct: 202 AHRLI----DKLHGSDLLCWSAVLGHPTRASNTAPVFGCDDFEGMRLAAVEGLGIAYLPD 257

Query: 247 YIVKDN---PNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++V ++     L +I  +          +Y           ++  F + +  +
Sbjct: 258 WVVGEDIQAGVLQQIFPEWSAQPQATTGIYAL-RALRHPPARVTLFLDALRAR 309


>gi|221197213|ref|ZP_03570260.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203885|ref|ZP_03576903.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176051|gb|EEE08480.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183767|gb|EEE16167.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 303

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 118/293 (40%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F    R  SFT AA +LHL+QS+ISRQI  LE  +G  LF R  R L LT  G 
Sbjct: 9   LQCLVAFEAAVRHASFTRAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRLTIAGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +   +  +            +L IA +  +    L   L +F   YP+I++
Sbjct: 69  QY--AAQVHHLLTQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPDFRAAYPNIKL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI+ +    +S    D  +   +    +    R+L    +    AP YL      L   
Sbjct: 127 RLIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPRYLA--GRTLDAA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+   D   + M    W    D    + +   + +NSY  I+Q  +LG G++L 
Sbjct: 185 DLANETLLRLEDGQRQWMSWSEWFDQNDIDRPKAQPQDITINSYPQIVQMTILGQGVSLG 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             Y++    +   LVR+ +   +     Y   P         + F  ++F +A
Sbjct: 245 WRYMIDACIEAGLLVRVTDASASHGGGYYVISPNDRAQNQAARLFSRWLFEQA 297


>gi|188580492|ref|YP_001923937.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179343990|gb|ACB79402.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 304

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 118/294 (40%), Gaps = 5/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L +F V+AR+G F  AA +L +S S++S  + GLET +G++LF R  R +TLTE G
Sbjct: 8   DLGDLNLFRVIARAGGFRRAALELDVSPSALSHALRGLETRIGVRLFNRTNRAVTLTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L       + ++E     L     KP+G+LR+    D  + +L   L  FL  YPD++
Sbjct: 68  ADLLTRLEAGFGEIEEGLEALNRYRGKPAGRLRLNVLTDAARLVLGPALSGFLAAYPDVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++ +  +DI     D  IR    +    +       I     A+P YL+        
Sbjct: 128 LEVVVQDDFVDIVGQGFDAGIRFGGRVPEEMIAVPIGGDIRWIMVASPGYLEKAPPLEHP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I                 T  R +       L  +     +       GI  
Sbjct: 188 SDLAAHRCIGLRMGTGAIYHWEVERGTEHRVVDVAWSVVL--SETALAVAMAETDGGITY 245

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             + +V        L  ++ +  +P    +  Y    +    L+A   ++   A
Sbjct: 246 CQEGLVARQLAAGTLQEVLPEWSSPGPGFHVYYSSRRQVPQALRALIAYLREHA 299


>gi|308187962|ref|YP_003932093.1| HTH-type transcriptional activator ampR [Pantoea vagans C9-1]
 gi|308058472|gb|ADO10644.1| HTH-type transcriptional activator ampR [Pantoea vagans C9-1]
          Length = 305

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 125/293 (42%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F + YP I +
Sbjct: 68  SYYLDIKEIFSAINEATRKLQARSA--KGALTVSLLPSFAIQWLVPRLSSFNMAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D AI   +      L   KL   ++    +P  +       +  
Sbjct: 126 RIQAVDRDEEKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPSLMTGDNPLKTPM 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +  L+          +  +++  +       +   +  +    ++Q  + G G+AL 
Sbjct: 185 DLSRFTLLHDASR----RDWQSYIRQLGLQHINVQQGPI-FSHSAMVLQAAIHGQGVALA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   L+    DV+      Y    ++    GK+ AFR +I  KA
Sbjct: 240 NNVMAQSEIEAGRLICPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILEKA 292


>gi|300704172|ref|YP_003745774.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299071835|emb|CBJ43161.1| putative transcription regulator protein, Lys-R family [Ralstonia
           solanacearum CFBP2957]
          Length = 318

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 125/294 (42%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AA++L L +SS+S  +S LE ++G++LF R  R L LT+ G
Sbjct: 5   DWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGVRLFERSTRRLRLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +     L   + E +  +  ++
Sbjct: 65  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMREHAGLR 124

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ +  + ID      D  + + R+P+  S ++ +++  +      AP  L+       
Sbjct: 125 IEVDVAPRQIDPLAQGYDIMLTVPREPLPDSGMVAQRVFDLRRAVVIAPALLERLGPLTH 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +           ++ +       +  P    ++ ++    +Q  V G G+A
Sbjct: 185 PDQLIDWPCLGLAGES-----EWQFRTPGGEALNLPLDFRMRTSNSELRLQAAVAGLGVA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +     ++      L  ++    +P   VY  +P       K+K F + +  +
Sbjct: 240 RITSAFAEELIAAGALREVLTGFQSPPMRVYAVFPGRRLMPAKVKVFMDALHRR 293


>gi|307727366|ref|YP_003910579.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587891|gb|ADN61288.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 335

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 134/297 (45%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +    A SGSF+ A+ +LH+   ++SR+++ LE  +  +L  R  R LTLT+
Sbjct: 1   MDRLEAMSILVAAAESGSFSAASRKLHMPLPTVSRKVAELEAHLNARLLVRSTRKLTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS       ++  ++   +         P G+L +   +  G+  +   + EFL  +P 
Sbjct: 61  AGSAYLAACKQILEQVSEAENAAAGEYSAPRGELLVTAPVVFGRLHVLPIVSEFLAAFPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L ++++ +  ++ D A+R+ K +  SS+I  ++ T+     A+P YL    EP 
Sbjct: 121 ITVKLVLADRNLHLLDEHIDVALRIGK-LPDSSMIATQVGTVSRVVCASPQYLSRAGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L + + + F  L    + DF   +   RP      + L VN+  + +   + G G+
Sbjct: 180 SPADLARFSCVVFDALPSGSIWDFA--SNKGRPESVSIHARLAVNTAEAAIDAAIAGVGL 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y          L  ++ D       V   +    +   K ++F +F   + R
Sbjct: 238 TNVLSYQAASAVSEGKLKLVLRDFEPEPVPVSVMHTGQGRIPLKTRSFIDFTVPRLR 294


>gi|270262942|ref|ZP_06191213.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043626|gb|EFA16719.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 319

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 125/285 (43%), Gaps = 11/285 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VA  GSF+ AA +L +  SS+ R I  LE+ +   LF R  RGL LT+ G  
Sbjct: 27  EHLPIFLEVALLGSFSAAARKLGMVPSSLVRHIDALESALDATLFIRSTRGLMLTDAGEM 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +   +   + EL   S  P G LRI+     G+  +   L      YP + + 
Sbjct: 87  LKARAAALLSDITDIRAELASLSDVPQGTLRISCLPTFGKTYILPLLPTLAERYPQLFVD 146

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D + +  D AIR+ +  + S L   ++ T      A+P Y+     P  +  
Sbjct: 147 LDLTERQTDPTQELLDAAIRIGEQ-KDSGLYASRIATQRWVMCASPGYIARYGCPGDLNA 205

Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H LI  +    P C     W   +   +       L+ N + +  Q  +LG GI  L
Sbjct: 206 LPEHRLIARYNKQQPAC-----WTQILSGQLLNRCSMVLRCNDFTAQRQAALLGLGITFL 260

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           P+++V  +     L +++ED       +Y   P A   + +L AF
Sbjct: 261 PNWVVGPDIQAGRLHQVLEDPRQEQQGIYLLRPVAK-ISARLSAF 304


>gi|261212055|ref|ZP_05926341.1| glycine cleavage system transcriptional activator GcvA [Vibrio sp.
           RC341]
 gi|260838663|gb|EEX65314.1| glycine cleavage system transcriptional activator GcvA [Vibrio sp.
           RC341]
          Length = 294

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 120/288 (41%), Gaps = 11/288 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G       
Sbjct: 2   FEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQSYFLDI 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            +++  L     +L E S    G L I+         L   L +F    PDI +++   +
Sbjct: 62  KDIFSSLAEATDKLLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDVRIKAVD 119

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
            D     D  D AI   +      L   KL    +    +P  L   +   ++++L  H 
Sbjct: 120 MDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPALLLGNKPMETLKDLSLHT 178

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           L+          +D+   A  +             +    ++Q    G G+AL  + + +
Sbjct: 179 LLH-----DTSRKDWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALGNNVLAQ 233

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 234 PEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 281


>gi|254440694|ref|ZP_05054187.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198250772|gb|EDY75087.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 310

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 128/298 (42%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   GS + A   L +S +  S +IS LE  + ++LF R  R LT T
Sbjct: 1   MSY-LDNIRTFVRVYELGSMSAAGRDLRISPAVTSSRISSLEEHLNVRLFQRTTRSLTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG   +     V   ++T + ++   +  P G L +A  + +G+ L+   +  F+  YP
Sbjct: 60  EQGRAFYTGAVAVLEAVDTAEGQVAGITDNPKGSLYVAAPLGVGRRLIAPLVPNFVRDYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I+L L ++ +D++ +  D +  L +P   S+L  + +V       AAP Y+     P
Sbjct: 120 LIDIRLRLTDRTVDLTTEGLDISFFLGEP-ADSNLRIKPIVHCDRVLVAAPKYIAQRGNP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +    L  D HN +      P   E    L T D P         + +    + ++ + G
Sbjct: 179 VDGAALVKDAHNCLNL--RYPGAPEFQWRLQTSDGPQRFRVAGRYECDDGDVLTEWALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GIAL P + V  +     LV +          +   Y    +   K + F  ++  +
Sbjct: 237 EGIALKPVFEVAGHLNAGRLVPVATKNPPMPIQMACLYTHRRRQDPKTRLFMEYMTTR 294


>gi|42525025|ref|NP_970405.1| hypothetical protein Bd3688 [Bdellovibrio bacteriovorus HD100]
 gi|39577236|emb|CAE81059.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 300

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 114/291 (39%), Gaps = 4/291 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L    +VA   +FT AAE+L +S  +IS+ I  LE  +G+ L  R  R  +LTE G 
Sbjct: 6   LDGLLALKLVAEKRNFTAAAEELGISPPAISKMIKQLEKRLGVALLTRTTRSTSLTEAGI 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +          ++ +    +   + KPSG LRI       Q  ++  L  F   YPDI +
Sbjct: 66  RFLGQAGPGLEQILSAITSVGSYADKPSGVLRINLPRATYQPYIEPLLASFAKKYPDITV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++  D+     D  IR    +    +  R    I      +  YL     P + +
Sbjct: 126 DLYFSDQTEDVVQSGFDAGIRHSDILAQDMVAVRISGPIRFVVVGSKKYLDKMGRPKTPK 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + F        + +       R         + +N  L ++   V G G+  +
Sbjct: 186 DLLLHNCLKFRFGSSSVYDRWE-FEHNGRDFQVHVKGSVIMNDPLLLVDAAVGGMGLTYV 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +  VKD   +  L  ++      S   +  YP+  +   KL+AF   I  
Sbjct: 245 LEDTVKDYLKSGKLEVVLNQFAPSSAGYFLYYPKRSQVQPKLRAFIGHIKE 295


>gi|260598250|ref|YP_003210821.1| HTH-type transcriptional regulator YhjC [Cronobacter turicensis
           z3032]
 gi|260217427|emb|CBA31521.1| Uncharacterized HTH-type transcriptional regulator yhjC
           [Cronobacter turicensis z3032]
          Length = 301

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 128/293 (43%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L +F  VA   SFT AAE L + +   S  +  LE E+G  L  R  R + LTE+G
Sbjct: 3   NLEPLMIFARVAEMKSFTQAAESLGIQKGRASVVVRELEQEIGATLLNRTTRTVQLTEEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +    ++  + +  +    +S     G+LR+     L +N++   L + L  +P+++
Sbjct: 63  RAFYTRARDLLAEADELKSMFSQSETALRGRLRVDMPAVLAENVVIPALPQLLDAHPELE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   ++ +D+  +  DC IRL  P+   +L+ R L  + M   A+P YL     P ++
Sbjct: 123 LELSSTDRRVDLIQEGFDCVIRLG-PVVDETLVARPLGKLRMVNAASPDYLARVGVPQTL 181

Query: 184 QELDK--HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++L +  H ++ +          + +  T +          + VNS  +  +  + G G+
Sbjct: 182 EDLTRQGHRMVHYVRRFGSKPYGWEY-PTKEGYASLMLPGAVSVNSVQAYHRAGLAGLGL 240

Query: 242 AL-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                  L  Y+ +    LV ++ ++        F        + +++ F  +
Sbjct: 241 IQGGYSTLAPYMAR--GALVEVLPELRPEPLDAAFVIAHRRNLSQRVRVFMRW 291


>gi|94314824|ref|YP_588033.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93358676|gb|ABF12764.1| transcriptional regulator, LysR-family [Cupriavidus metallidurans
           CH34]
          Length = 317

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 123/298 (41%), Gaps = 7/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  +  +G+ + AA +L ++++++S  +  LE E+G++L  R  R +  T  
Sbjct: 1   MDLNALRLFVDIVDAGNLSAAARKLKMTRANVSYHLKALEEELGVQLLRRTTRHVEPTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L+     +  ++      +        G +R++    LG  ++   L  F   YPDI
Sbjct: 61  GAGLYEHGKNILGEVAAANALISSMGKSLQGHVRLSVPTGLGHTMISPLLVRFKQRYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ DN+  ++  +  + A+R+      S ++  ++  +     AAP YL     P  
Sbjct: 121 TLDVVFDNRIHNLVSEDVEVALRIISTPPDS-VVATEIGGVDWLLCAAPSYLAGRTPPAH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H ++    +  K         T DR         L   ++  + +  V G GI 
Sbjct: 180 LADLTTHAIVCASPIGQKLKVSGTRDGTADRE-QVVLEPTLSSENFAFLKEAVVGGLGIG 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + P Y V     +  L  ++ D    +F   +Y         T   +    F+  + +
Sbjct: 239 IFPLYAVDKELASGALESLLGDYQISAFGSKLYMLTMPNRYQTMATRYLLTFLRTELQ 296


>gi|270261620|ref|ZP_06189893.1| LysR family transcriptional regulator [Serratia odorifera 4Rx13]
 gi|270045104|gb|EFA18195.1| LysR family transcriptional regulator [Serratia odorifera 4Rx13]
          Length = 303

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 127/288 (44%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF +V   GS   AA +L ++ S++S+ +  LE  +G+ L +R  R L LTE G+  +
Sbjct: 1   MAVFAIVVAEGSLAGAARRLGMTPSAVSQHMRSLEKALGVPLLHRSTRRLALTEAGAAFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  L E      G+LRIATT+ +G   L   L   L  +P + ++++
Sbjct: 61  PGCEAMLSQAQQAEQRLAELRDTLVGELRIATTVGIGGRPLAEALAPLLQAHPKLTLRVL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D++ +D+     D A+R+ + +  +S+I   L    M   AAP YL     P + Q+L 
Sbjct: 121 ADDRIVDMIEQRIDIALRVNRQLADASMIAHPLAEWPMVLCAAPRYLSQHGVPETPQDLV 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I+                 +   + E     +  +S   +  +   G GI++ P Y
Sbjct: 181 AHRWISGIHSGAHLDLHHQSGQQLKLRLAE---GQIVSDSMTVMRGFTRSGLGISVQPLY 237

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEAL---KNTGKLKAFRNF 289
            ++D      L+ ++ +       ++    E     KN   L+  R++
Sbjct: 238 EIEDELQRGELILLLPEWRPVPLRLHALTLERAMPEKNRQALRYLRDY 285


>gi|170733236|ref|YP_001765183.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169816478|gb|ACA91061.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 303

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL   P+
Sbjct: 61  EGAAFLERCRGLLSEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLADKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 MQLSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPDYFRLHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L KHN + F     +  ++  W       I   R++  L  N    + ++   G G
Sbjct: 180 SLDDLLKHNCLAFNL---QGGQNRGWYFQRHGKIATMRVTGNLDCNDGELLHRWVAEGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     + +    +   L  +++D   P + +   YP+      +++ F +++   
Sbjct: 237 LGWRSTWEIAAQLETGELETVLDDYALPDYDILAVYPQQRYVPARVRYFIDYLREA 292


>gi|299530450|ref|ZP_07043871.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298721590|gb|EFI62526.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 318

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 129/289 (44%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L+ F  VA+ GSF+ AA    +S S++S+ ++ LET +G++L  R  R L LT +G +L
Sbjct: 14  ELQTFVQVAQQGSFSAAARLREVSPSAVSKIVARLETRLGVQLLRRSTRRLELTAEGEQL 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++       +  +     +P+G +RI  +   G  LL   +   +  +P +Q+ L
Sbjct: 74  LEQGRQLLTDWLALESSVT-RQGQPTGVVRINASSSTGNRLLVPLVGLLMRTWPGLQLDL 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+    AD A+R  + + SS ++ RKL        A+P YL+    P    EL
Sbjct: 133 SFTDHVVDLIAARADIALRWGE-LPSSDMVARKLGHTRQVIVASPDYLQRFGRPQHPDEL 191

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +  G   P+ +  +       + +       L+VN   ++      G+G+A L  
Sbjct: 192 AGH--VRIGWNYPRAIPHWP-FVVAGKAVTVSMGEVLRVNDGEAMANLAKAGAGLARLSL 248

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFI 290
           Y   ++     L  ++ED        ++  Y  +  +   + +A  +F+
Sbjct: 249 YHAWEDLHAGRLQVLLEDFNPGDLQPIHAVYVGKPGQLPVRTRAVLDFL 297


>gi|299132915|ref|ZP_07026110.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gi|298593052|gb|EFI53252.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 315

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 121/297 (40%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +    A +GSF+ A  QL +   ++SR+++ LE  +  +L  R  R L+LT+
Sbjct: 1   MDRLEAMSILVASAEAGSFSAAGRQLGVPLPTVSRKVAELEAHLNTRLLVRSTRKLSLTQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +++  + +       P G L +   I  G+  +   + EFL  +  
Sbjct: 61  AGLAYIAACKRILEQVDEAESQASGEYTVPRGILTMTAPIVFGRLHVIPVVNEFLASFAQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL+L +  ++I  ++ D A+R+   +  S+LI  K+  I      +P Y      P 
Sbjct: 121 ISVQLMLSDHTVNIVDEHIDLAVRIGM-LPDSTLIATKVGEIRPVVCGSPEYFAAHGVPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  +T+  L       FN       P        L++N+  + +   +   G+
Sbjct: 180 TPGDLADHMCVTYTALASGMTWIFNPRGKA--PKSVRPYCRLKINTAEAAIDAAIASVGV 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y V        L  I+ED       V+  +        KL+ F  F   + R
Sbjct: 238 TNVLSYQVARAVAAGKLKLILEDYEPDPIPVHLVHTGQAILPLKLRRFMEFAASRLR 294


>gi|238754821|ref|ZP_04616172.1| Glycine cleavage system transcriptional activator [Yersinia ruckeri
           ATCC 29473]
 gi|238706981|gb|EEP99347.1| Glycine cleavage system transcriptional activator [Yersinia ruckeri
           ATCC 29473]
          Length = 293

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 125/290 (43%), Gaps = 17/290 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G   +   
Sbjct: 2   FDAAARQLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQSYYLDI 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E++  +     +LQ  S    G L ++         L   L  F   YP I +++   +
Sbjct: 62  KEIFTSINEATRKLQARSA--KGALTVSLPPSFAIQWLVPRLSSFNSAYPGIDVRIQAVD 119

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           ++ D   D  D AI   +    + L   +L    +    AP  L          +L  H 
Sbjct: 120 REEDKLADDVDVAIFYGRG-NWTGLRTERLYAEFLLPVCAPGLLMGEHPLKVPTDLAYHT 178

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGIALLPDY 247
           L+             +WLA   R +G P+I+  Q    +    ++Q  V G GIAL+ + 
Sbjct: 179 LLH-------DTSRRDWLAYT-RQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIALVNNV 230

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +   +   LV    DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 231 MAQTEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARA 280


>gi|190576327|ref|YP_001974172.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014249|emb|CAQ47893.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 300

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 137/294 (46%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+++ F  V  SGS + AAEQL  + S +SR +  LE ++G  L  R  R L LT
Sbjct: 1   MKTTLDEMQAFLAVIDSGSISAAAEQLGQTPSGVSRALGRLEDKLGTTLLTRTTRRLHLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    R    +   +E+ + ++     +P+G+LR+   +    +++   +  +   YP
Sbjct: 61  AEGEAYLRHARAIIDAVESAEEQMAARRERPAGRLRVDAAMPFVLHVIAPLVAGYRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q++L    + ID+     D AIR+  P+  S+L  R L    +   A+P YL    EP
Sbjct: 121 EVQLELNSSERYIDLLERRTDLAIRIG-PLADSTLHARPLGRCQLRLVASPAYLAAHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+  L +H L++F +  P+ +  +      D  +       + V+S  ++ +  V G G
Sbjct: 180 ASVAALGQHTLLSFNE--PESLNHWPLPGDADGLLRV--RPDIAVSSGETLRRLAVEGVG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
           I  L D++   +     LV ++       +  ++  Y      + ++ +F +++
Sbjct: 236 ITCLSDFVTDRDRAAGTLVPVLATQTLDVYQPIHAVYYRNTAVSARISSFLDYL 289


>gi|13476840|ref|NP_108409.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14027601|dbj|BAB53870.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 300

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 128/290 (44%), Gaps = 6/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF    R  SFT A  +L ++Q+++S  + GLE ++G KLF R  R ++LTE G + H
Sbjct: 14  LIVFEAAGRLSSFTAAGRELGMTQAAVSYAVRGLEEQLGAKLFQRRHRQVSLTEAGERFH 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S     +  +  +L+       G + +A +   G   +   L++F    P I +++ 
Sbjct: 74  ADVSLGLSHIRKSAEDLR--LQATGGHVTLAASTAFGSFWMMPRLQQFRDELPGIDLRIQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++D+DI  +    A+R  +P          L    +   A   YL     P ++ EL 
Sbjct: 132 TADRDLDIIAEGIPLAVRGGEPRDWPDYHSLPLADEEIFPVAGTSYLAKFGMPRAVGELA 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H LI   +   +      W  +    +G+     L++N Y  ++Q  + G GIAL   +
Sbjct: 192 THRLIHLEEPYREAASWDEWFQSAGGSLGD-TARGLRINDYGLVIQGVMEGQGIALGWRH 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +       LV++ + V+      Y  +P+  + +   +  R+++  +A
Sbjct: 251 LAERLLATGLLVQVTDHVLKTGKAFYIVWPKNRELSDNARKVRDWLAAQA 300


>gi|304412475|ref|ZP_07394081.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307307134|ref|ZP_07586872.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304349117|gb|EFM13529.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306910373|gb|EFN40804.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 310

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 121/296 (40%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F  VA  G+ + AA ++ +S +S S  I  LE ++   LF R  R L LT Q
Sbjct: 1   MLINDLALFVRVADCGNISAAAAEMDISAASASAAIKRLEKQLDTSLFIRTTRSLRLTVQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L   +  +     K SG L ++ + D G+NL    L EFLL +P +
Sbjct: 61  GERYLIHCRRALSDLALGEQAIASDKGKISGTLSLSVSSDFGRNLFVPWLDEFLLDFPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L L +       D  D A+R  KP Q S+ +   L +I     A+P YL     P S
Sbjct: 121 QVRLHLGDNISSFYHDKIDVAVRYGKP-QDSNQVAFPLCSIDRVLCASPEYLAEFGVPDS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L +HN + +   + +   D        +            N      ++ V G G+ 
Sbjct: 180 LEQLIEHNCLFYK--LDERTHDQWQFRRDGQEYKVRVTGNRSANDAEIARRWAVAGKGLV 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                 + D+     LVR++ D       +Y   P     T  +   R  +  + +
Sbjct: 238 FKSSLDLADDLISGRLVRLLPDYQGEPVDLYLVCPGREHVTPVVLLLREMLRQRTQ 293


>gi|262173152|ref|ZP_06040829.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
 gi|261890510|gb|EEY36497.1| transcriptional regulator LysR family [Vibrio mimicus MB-451]
          Length = 295

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  SGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQLI       +   + D  I R    + S S     L       YA+P YL+    P
Sbjct: 121 IRIQLITT-TPGQLPELHLDLFISREIDQLNSLSFKATPLFEHQAGFYASPSYLEKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++QEL +HN++ +G+   + ++         +             +  ++      G G
Sbjct: 180 KTLQELTQHNVLCWGEQTYREVKTA-------QGKRITLTGNFATTNPEALFYAGKAGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +    ++K+     NLVRI+ DV     TVY  YP+      + + F + +  K 
Sbjct: 233 VIVTGHIMIKEELKQGNLVRILPDVTIDQATVYAYYPKLEYQHTRTQLFLDHLKQKL 289


>gi|222084825|ref|YP_002543354.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722273|gb|ACM25429.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 305

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT 
Sbjct: 6   HFTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFALKVKLFERNPRGYVLTG 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  + E  + +L   S    G +RI+    +        L EF   YP+
Sbjct: 66  MGQRFIDTAERMEQETERLRADLTVGSAAQRGVVRISAPEGISNFFFTTMLPEFTARYPN 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+   + + +S   AD  + L  P ++      KL   H+  Y +  YL N     
Sbjct: 126 ISLELVTIQQIMSLSRKEADIVVVL-DPPKAGPYFTEKLTDYHLQVYGSRDYLANHPPVE 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           S  +L  H  + +       +ED  +   +D      PRI    Q +S  + +     G 
Sbjct: 185 SRNDLPDHAFVGY-------IEDMIFAPGLDYLGDIHPRIKPQFQSSSIFAQLTATKNGL 237

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+ +LP +I   +P+L  ++ D +      +      L+ + +++   +F+    
Sbjct: 238 GLCVLPYFIACRHPDLQMVLPDDVDLKRHYWITCHRDLRQSPRVRTVIDFLMEAV 292


>gi|119896874|ref|YP_932087.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119669287|emb|CAL93200.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 321

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 123/284 (43%), Gaps = 6/284 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR    +  +GS + AA+QL ++Q ++SR++  LE  +G+KL  R   G+ LT +G +
Sbjct: 16  ELLRTLVRIVEAGSLSAAAQQLGITQPTVSRRLQALERALGLKLLQRSTHGMKLTGEGER 75

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +    ++  + +  + +L  +  +P G LR+      GQ  L   L ++L  YP++ ++
Sbjct: 76  CYAHARDLIERWQAMETDLHGARDEPRGNLRVLVPHAFGQGQLIAPLVDYLRRYPEVAVE 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +L ++  D   +  DCAI++ + +    ++  +L  +     AAP        P + + 
Sbjct: 136 WLLHDRRPDFLAEGIDCAIQVGE-VADPGVVAVRLAEVPRIVVAAPGAWGEGAPPAAPEA 194

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L     +          E     +        P    L  +S  ++    + G G  +  
Sbjct: 195 LAAMPWLALRTYYRD--EVLLVRSGDGERSRFPIRPRLSTDSLYALRTAALTGLGACVTS 252

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            ++V D+     L  ++ +   P   VY  YP A     KL+ F
Sbjct: 253 AWVVADDVAGGKLCHLLPEWEAPPLPVYLVYPHARHYPAKLRVF 296


>gi|326796080|ref|YP_004313900.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326546844|gb|ADZ92064.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 303

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 128/294 (43%), Gaps = 10/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR GSF  AA +L+++ S+IS QI GLE+ +GI+LF R  R + LTE G 
Sbjct: 4   LNSLKCFESAARHGSFNRAANELNVTPSAISHQIKGLESFLGIELFRRTKRKVILTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       ++ +LE+   +L+ +     G L +A         L   ++ F   YPDI++
Sbjct: 64  QYIGPIKSIFEQLESATADLKSAQK--GGYLSLAVAPAFLTRWLMPRMESFQAQYPDIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++      + +S    D AI      +   L    L  I +    +P  +K  +   + +
Sbjct: 122 EITSSMGAVGLSNSDIDMAIYFGNG-EWDDLEVHYLRPISLAPVCSPKLIKPNQPINTPE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++  + L+       +  E  +WL   D      R   +  +  L+       G GI+L 
Sbjct: 181 DMRFYPLLHVSK---RRDEWHDWLKQNDVDPKFFRRGLMLSSGSLTA-GAAAQGLGISLA 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              ++ +   +  L+ + +  +  + + Y  Y +    T  + AF+ ++  + R
Sbjct: 237 DSGLLSEEIKSGELILLFDHHLRTNRSFYLVYEKRRAVTPAMAAFKEWLMEETR 290


>gi|317403963|gb|EFV84427.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 300

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 133/296 (44%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+++VF  +   GS T AA+ L  + S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTTLDEMQVFIAIVDCGSITAAADALQQTISATSRTMTRLEEKLQTTLMRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+GS       ++   +E T+ +++    +P+G+LR+        +++   +  +   YP
Sbjct: 61  EEGSAYLEQARKIIAAVEETEEQMRARRNQPAGRLRVDAASPFMLHVIVPLVPGYRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +  +ID+     D A+R+   ++ SSL    +    +   A+P YL     P
Sbjct: 121 KVELELNSNEGNIDLLERRTDLALRIGS-LKDSSLHAVPIGRSRVRVLASPGYLAAHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H L+ F  L  + + ++       +P+       ++  S  ++ Q  +  +G
Sbjct: 180 KRAADLREHTLLGFSQL--ESLNEWPLEDADGQPLHIQ--PSIRSFSGETLRQLALNDAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L D++ + +     L ++           V   Y      + ++K+F +++  
Sbjct: 236 IVCLSDFMTRADRQSGALRQLFPRQTLDVRQPVNAVYYRNTAISSRIKSFIDYLVE 291


>gi|171317421|ref|ZP_02906614.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097438|gb|EDT42279.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 310

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 130/302 (43%), Gaps = 13/302 (4%)

Query: 1   MSFDWDKL-----RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M   +D L      +F + A  GSFT AA    ++ +++SR ++ LE  +G++LF R  R
Sbjct: 1   MQRKFDDLLLGSIELFCLAAELGSFTLAATAATVTPAAVSRSVARLEERLGVRLFVRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            + LT+ G +      +   +L   + E       P+G LRI+     G   +   L  F
Sbjct: 61  QIRLTDSGRRYFEQCRDALSQLVDAEREATGQQATPAGVLRISMPTPYGHYRVLPLLPAF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YPD+ ++  L N++ID + +  D AIR R P   SSL+ RKL    +   A P YLK
Sbjct: 121 RERYPDVCVETHLSNRNIDFAEEGFDLAIRGRAP-ADSSLVARKLEDAELVVVATPGYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQ 233
               P ++ +L  H  I F   +P       WL        E   +     +   L+ + 
Sbjct: 180 RAGVPRAVDDLHAHECIQFE--LPSSGRPIPWLFNDGPAELEIATTGGYGTLGDVLAGVT 237

Query: 234 YCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               G+G+     +IV+ +     L  ++      S      YP A   + +++ F +F+
Sbjct: 238 LARSGAGLFQTYRFIVERDLREGTLAEVLSGQGGRSRPFMLLYPHARYLSSRVRVFVDFL 297

Query: 291 FL 292
             
Sbjct: 298 VE 299


>gi|167834953|ref|ZP_02461836.1| LysR family transcription regulatory protein [Burkholderia
           thailandensis MSMB43]
          Length = 322

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 126/300 (42%), Gaps = 12/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS + AA +L  + S++++ I+GLE  +G +L  R  R L LTE G 
Sbjct: 7   LSALETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGAQLLERTTRRLVLTEGGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I
Sbjct: 67  LYLATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +  +DI  +  D A+R+      S ++ + + +      A+P YL     P +  
Sbjct: 127 ELSLSDHYVDIVGEGFDLALRMGNYDLPSQIV-KPIGSNRSLLCASPGYLARRGRPAAPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +    P     + +     R   EP+   L  + Y   +   + G+G+   
Sbjct: 186 DLAQHDCVLYRH--PTLANTWTFDRDGVRARIEPK-GPLATDDYGLALAATLDGAGVLPC 242

Query: 245 PDY---IVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P +    V +   LV ++ D    S +     +   YP + + + K++     +  K  D
Sbjct: 243 PQWSVVDVLEAGRLVPLLVDWRFESASFGEDRICAAYPSSRRGSTKIRRLVERVEAKLAD 302


>gi|312797122|ref|YP_004030044.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312168897|emb|CBW75900.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 373

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 129/294 (43%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  VA + SF  AA+QL++S + ++R I+ LE  +  +L  R  R ++LTE G 
Sbjct: 4   IQAMRVFTRVAETQSFRRAAQQLNVSNALVTRSIATLEAHLNTRLINRTTRNVSLTEAGY 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +  +L+  +  +     +P G LR+A +  LG   L G ++ F   +  I++
Sbjct: 64  VYLQGCRRLLEELDFIEATVVNGDDEPRGTLRVAASTSLGDE-LIGLVEGFRQRHGRIRL 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D   D  D  +        + L  + L +      A+P+YL     P +  
Sbjct: 123 HVTLGDQAVDALGDNYDVGLVQAAVAPGNGLSSQILSSCASVIVASPNYLLEHVAPQAPN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L   +L+         +         +  +  P      VNS   +    V G GIALL
Sbjct: 183 DLPALSLLAQSHSDRSRLWRLRDAHGAEYQLAMPE-PVYVVNSAQMLRAAAVGGMGIALL 241

Query: 245 PDYIVKDN---PNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V+ +     LV+++ D  ++    T+   YPE      K +AF  F+  +
Sbjct: 242 PQRVVERDVASGRLVQLLPDCEILESKTTLSVVYPERQYMAAKTRAFVEFVCAR 295


>gi|300696832|ref|YP_003747493.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299073556|emb|CBJ53076.1| transcriptional regulator of glycine cleavage system operon, LysR
           family [Ralstonia solanacearum CFBP2957]
          Length = 304

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 119/298 (39%), Gaps = 11/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH---ARGLTLTE 61
            + LR F    R  SF+ AA +L+++ +++ + +  LE  +G  LF+R       L  TE
Sbjct: 7   LNALRAFEASTRHQSFSAAAAELNVTPAAVGQLVRSLEASLGTPLFHRSSGGRARLVATE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + +L      L+E+S   SG L +  +       L   +  F   +PD
Sbjct: 67  AAERALPDIRAGFDRLSLGLARLKEASA--SGVLTVTVSPAFAAKWLLPRIDRFQAAWPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L    K +D      D  +R         L+  KL+   ++   +P  L+  R   
Sbjct: 125 TDVRLDTHLKPVDFIAQGVDIGVRYGAG-SWPGLVAEKLMGEEIYPVCSPGLLRQKRRLR 183

Query: 182 SIQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +L +  LI             ++                +++N+  +++Q  + G G
Sbjct: 184 NPADLARETLIHDLSVEGHDGFASWDAWLEKAGVTTVATKRGMRINNSAAVLQAAIDGHG 243

Query: 241 IALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +AL    + +D+     LVR+  +V  T +   Y  Y        KL AFR+++  +A
Sbjct: 244 VALARSVMARDDLAAGRLVRLFPEVEFTSALAYYVVYRAECAGLPKLAAFRDWLVSEA 301


>gi|261212398|ref|ZP_05926683.1| putative HTH-type transcriptional regulator YcjZ [Vibrio sp. RC341]
 gi|260838329|gb|EEX64985.1| putative HTH-type transcriptional regulator YcjZ [Vibrio sp. RC341]
          Length = 297

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 6/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   L  F  V + GSFT AA     SQS++S+ +S LE  + +KL  R  R LTLT
Sbjct: 1   MRENLSDLITFLNVVKEGSFTRAAALAGTSQSAVSQTVSNLEQRLQLKLLNRTTRSLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G KL  + +     +     +L E    PSG +RI+      Q +L   L   +  +P
Sbjct: 61  EAGEKLVTLVAPAIEDINIGLEQLGELRDTPSGTVRISADEYAIQQVLWPKLAPVIKQFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++LI D   +DI+    D  +R    I    +  +      M    +P        P
Sbjct: 121 EINLELITDYGLVDIAKGGFDAGVRRGGLIAKDMIAMQISNEHKMSVVVSPDCSPQDTLP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               +L     I     +P   ++F W+ +VD      R+   + VN    ++Q  + G 
Sbjct: 181 KVPSDLVSLPCINLK--LPTHGDNFPWIFSVDEQEYRIRVKGQVVVNGINQVVQAALDGY 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G A +P+ +V    D+  L+ ++          Y  Y   L+++   K   + +
Sbjct: 239 GYAYVPEVLVAKLIDSGQLISVLPSYCITHSGYYLYYTSRLQSSAAFKVILDAL 292


>gi|260549546|ref|ZP_05823764.1| LysR-family transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407339|gb|EEX00814.1| LysR-family transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 303

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 128/297 (43%), Gaps = 6/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V    SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+
Sbjct: 4   ALDFNTLKVFIAVVEKESFVGASKLLEMPTSNVSRCISQLEEKLDLQLIERSTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + EF   YPD
Sbjct: 64  AGQLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVIAEFACQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  + +    +   D  D AI + R  + +S  I R LVTI     AAP  ++    P
Sbjct: 124 LEISCVTNLSGFESLRDDLDLAIIISRGQMDNSDYIARHLVTIPCTIVAAPSLIQRYGTP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++ ++   IT    +      + ++               +VNS     Q  V G G
Sbjct: 184 TRIEQFEELPCITTVSALKGA--PWQFVNKKGEFEAIKVKGHYRVNSGEMAGQAAVAGIG 241

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            A+L     +    +  LV I  +       ++  Y        K +A  +FI  K 
Sbjct: 242 FAILSKQTCQPYISDGRLVEIEFEQKAAPLQLFALYSNRRYLPAKTRALIDFIHQKL 298


>gi|260222241|emb|CBA31606.1| hypothetical protein Csp_D27970 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 310

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 124/293 (42%), Gaps = 7/293 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   G F  AA  L +S ++++RQI+ LE  +G +L +R  R ++L+  G    
Sbjct: 7   MRVFQKVVDEGGFAAAARALDMSSAAVTRQIADLEDFLGARLLHRTTRKVSLSPAGETYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++         + + SG+LR+ +   L  +++   +  F   YP+I + + 
Sbjct: 67  GRVRTILQDIDEAHDLTSSQTQELSGELRLLSPPALASHVIGPIIAGFTAKYPEISLHMD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D   +    DY D  +         ++I R++ +      A+P YLK    P +  EL 
Sbjct: 127 VDTYTVPPVEDY-DITMLPTDGNYDGNVIARRVSSTQSILVASPAYLKRMGTPTTPDELI 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H+++          + +  L T   D     P    L VN   ++++  V G+GI    
Sbjct: 186 GHHVLRL-KTPHVSFDQWRLLNTERNDEAGVFPVKPKLWVNHGDTLLRAAVDGAGITSAA 244

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +V     +  LVR++   I     +Y   P       + + F  ++  ++R
Sbjct: 245 VTLVAPLLTDGTLVRVLSPWIGGHLALYAALPSRKFMPERTRVFLEYLTEQSR 297


>gi|116255589|ref|YP_771422.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260237|emb|CAK03341.1| putative LysR family transcription regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 317

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 132/295 (44%), Gaps = 8/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT 
Sbjct: 6   QFTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTA 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++      ++  + E  + +L   S+   G +R++             L +F   +P 
Sbjct: 66  MGTRFVETAEKMEQETERLRADLAAGSMAQRGLVRLSAPEGFANFFFATVLPQFAAQHPH 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+   + + +S   AD ++ L +P +  +    KL   H+  Y +  YL       
Sbjct: 126 LSLELVTIQQIMSLSRKEADLSVVLDEP-KGGAYFAEKLTDYHLQVYGSRDYLAKAAPIT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             ++L  H  +++ + +       ++L  V      PRI    Q +S  + +     G G
Sbjct: 185 CREDLLGHPFVSYIEEMIFA-PGLDYLGDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + +LP +     P LVR++ + I      +      LK   +++A  +F+    R
Sbjct: 239 LCILPYFFASRYPELVRVLPEEIDLKRHYWITCHRDLKQAPRVRAVIDFLREAVR 293


>gi|167648572|ref|YP_001686235.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351002|gb|ABZ73737.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 299

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 109/296 (36%), Gaps = 11/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  VAR+ SF  AA Q  +S SS+S  +  LE ++G++L  R  R +T TE G
Sbjct: 5   DLADLSAFTAVARARSFRGAAAQRGVSASSLSEALRRLEADLGVRLLNRTTRSVTPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +     +     E+      P+G L++     + + +    +  FL  +P I+
Sbjct: 65  ERLLARLTPALADVTLALDEVNAFRDSPTGVLKLNVPGAVARIVFPDLIPRFLAAHPGIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  ++  +D+     D   R  + ++   +              +P Y      P   
Sbjct: 125 LEITAEDSFVDVLAAGFDAGARYDERLEKDMIAVPLAGPQRFVVVGSPAYFAEHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           +E+  H  I            + W    D  +        L   S    +     G G  
Sbjct: 185 REVLNHPCIRHRFPSGTS---YAWEFEKDGEVIRVSPEGPLITTSGELELAAAEAGVG-- 239

Query: 243 LLPDY-----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LL  +            L  +++D + P    Y  YP        L+AF +F+  +
Sbjct: 240 LLATFEGFAIHGIRAGKLETVLDDWLAPFSGPYLYYPSRRHMPAPLRAFVDFVKAE 295


>gi|126176121|ref|YP_001052270.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125999326|gb|ABN63401.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 308

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 121/296 (40%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F  VA  G+ + AA ++ +S +S S  I  LE ++   LF R  R L LT Q
Sbjct: 1   MLINDLALFVRVADCGNISAAAAEMDISAASASAAIKRLEKQLDTSLFIRTTRSLRLTVQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L   +  +     K SG L ++ + D G+NL    L EFLL +P +
Sbjct: 61  GERYLIHCRRALSDLALGEQAIASDKGKISGTLSLSVSSDFGRNLFVPWLDEFLLDFPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L L +       D  D A+R  KP Q S+ +   L ++     A+P YL     P S
Sbjct: 121 QVRLHLGDNISSFYHDKIDVAVRYGKP-QDSNQVAFPLCSVDRVLCASPEYLAEFGVPDS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L +HN + +   + +   D        +            N      ++ V G G+ 
Sbjct: 180 LEQLIEHNCLFYK--LDERTHDQWQFRRDGQEYKVRVTGNRSANDAEIARRWAVAGKGLV 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                 + D+     LVR++ +       +Y   P     T  +   R  +  + +
Sbjct: 238 FKSSLDLADDLISGRLVRLLPEYQGEPVDLYLVCPGREHVTPVVLLLREMLRQRTQ 293


>gi|150377616|ref|YP_001314211.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032163|gb|ABR64278.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 317

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 127/295 (43%), Gaps = 13/295 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++VF      GS   AA +L  S ++ISR +  LE  VG++L +R  R L L+E
Sbjct: 1   MDRIDAMKVFVTAVEEGSLAAAARKLKRSPTAISRALGLLEERVGVELLHRTTRSLKLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +   V   V   LE   I        P G L I+    LG+ +L+  L +FL  +  
Sbjct: 61  AGQRYVEVCRRVLVDLEEADIIAGGERSSPRGVLTISAPPILGEEVLRPILDKFLKQHSS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L++ ++ +++  +  D A+R+     S+ +  R    +     A+P YL N     
Sbjct: 121 VSVRLLMLDRFVNLVDERVDIALRIGNLTDSTHITTRIGGDVRRVVVASPDYLANRNAIR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVL 237
              +L +H++I F +         +W  +       PR         VNS  +       
Sbjct: 181 EPGDLLQHDIIAFSN-----FGIGSWAFSPVGQGTIPRTVHFSPRYVVNSVRAAAASAAG 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           G G+  L  Y V +   +  L  I+ +    +  V+   P+   +  K++AF +F
Sbjct: 236 GMGVTRLYSYHVAELVRDGALKIILSEYEPSALPVHLLTPQGRISVPKVRAFIDF 290


>gi|241664781|ref|YP_002983141.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240866808|gb|ACS64469.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 298

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 119/286 (41%), Gaps = 6/286 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R +  LE  +G+ LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTVGRHVDALERALGMSLFLRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                   G +RI  +  +   +L   L +    YP++ +
Sbjct: 68  SLRPFAESLEATSAALLRAASSQGEGVRGTVRITASEVVAVEVLPPILADLHAAYPELTL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N+  D+    AD A+R++ P Q   L+ R L  I +  +A   YL     P +I+
Sbjct: 128 ELVPSNRMEDLLRREADIAVRMQPPSQ-GVLVARHLGGIELGLFAHQRYLAQRGMPTTIE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H LI +                V R         L+ +S L+ +     G GI   
Sbjct: 187 ELAGHTLIGYDKENAFLRSMRAQFPWVQR-----NRFALRTDSDLAAIAALRAGFGIGFC 241

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + + N +LVR+  + I  +   +    E L+++ + +   + +
Sbjct: 242 QVGLARHNADLVRLFSEQIAITLDTWLAMHEDLRDSPRCRVVFDAL 287


>gi|186470502|ref|YP_001861820.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196811|gb|ACC74774.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 320

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 128/286 (44%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V  SGSF+  AE ++ S  S+SR +S LE ++  +L  R  R ++LTE G + +
Sbjct: 7   MRIFSRVVESGSFSAVAEHMNCSTGSVSRAVSSLEDQLQARLLQRTTRKISLTEPGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   LE  + E  ++     G LRI    DLG   L  ++ E+   +P + +QL 
Sbjct: 67  QKCKKILADLEDAEAEAGDAHTCARGTLRIHCVTDLGLAQLTHSIIEYRKRFPAVSVQLK 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +  ++  D  D +I     +  S  + + +        A+P +L+  R  ++  +LD
Sbjct: 127 FLPRMANLLEDEVDVSIVSAPTLPDSRNVCKLIGHCERVLVASPAFLQTHRIDMA-SDLD 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H L      +     D +   ++ +           VN   +     + G+G+A LP +
Sbjct: 186 EHALTPVSFRVEPG--DHHVRLSLVKSASREAAGQFAVNDTEATRIATLAGAGVAALPTH 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            V D   +  LV++  +    +  V+  Y        K+K F +F+
Sbjct: 244 CVADDIRDGRLVQLFPESRLQNTGVFAVYSSRHHIDAKIKTFVDFL 289


>gi|116251020|ref|YP_766858.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255668|emb|CAK06749.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 299

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 122/288 (42%), Gaps = 4/288 (1%)

Query: 15  ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVY 74
           A  GSF+ AA +L L+ +++SR ++ LE  + ++LF R  R LTLTE G +      +  
Sbjct: 4   AELGSFSSAARRLGLTPAAVSRNVAALEGNLKLRLFQRSTRSLTLTEAGERFLLSIRDHL 63

Query: 75  HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDID 134
             L+    E      +PSG L+++ +  LG   +   L EF+  YP I+ + + +N+ +D
Sbjct: 64  DSLQGAISEASNEQSEPSGVLKLSMSPTLGIGYILPLLPEFMRRYPMIRPEWMFENRQVD 123

Query: 135 ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF 194
           +  +  D AI     + S  +I R L   H+   A+P Y+ +   P     L + + I  
Sbjct: 124 LIAEGYDAAIGGGFEL-SPGIIARPLAPAHIIPVASPGYIGDRVPPDDPSGLRELDGIVM 182

Query: 195 GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV---KD 251
             +    +                    + VN   ++     LG G+A++         +
Sbjct: 183 RSMRTGRIHQRQMRNLAGDEQPAALKETIVVNDPAAMRSAAFLGLGVAMIAKADALAYLE 242

Query: 252 NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +  L+R++      +  +   Y        K + F +F+    +  ++
Sbjct: 243 SGELIRLIPAWYADAGPISIYYANRTLLPSKTRVFIDFLTEVFQRERW 290


>gi|229514589|ref|ZP_04404050.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
 gi|229348569|gb|EEO13527.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
          Length = 295

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I++QLI       +   + D  I R  + + S S     L       YA+P YL     P
Sbjct: 121 IRVQLITT-TPGQLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++QEL +HN++ +G+      + F  + T                +  ++      G G
Sbjct: 180 QTLQELTEHNVLCWGE------QTFREVKTAQGKRLT-LTGNFATTNPEALFYAGKAGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I +    ++K+     NLVR++ DV     TVY  YP+      + + F + +  K 
Sbjct: 233 IIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPKLEYQHTRTQLFLDHLKQKL 289


>gi|218528270|ref|YP_002419086.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218520573|gb|ACK81158.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 302

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 116/296 (39%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  VA +G F   A     S S +S  +  LET +G++LF R  R +  T
Sbjct: 1   MAMDLGDLAAFVSVAEAGGFREGARASGTSASGLSEAVRRLETRLGVRLFNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    +    ++E     +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGARLLERLTPALGEVEAALDVVNGFRDRPAGTLRLNVPVSAARLVLPRIVPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI++ ++ ++  +D+     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 DIRLDVVAEDSFVDVLAAGCDAGIRYDERLEQD-MIAVPIGPRQQRFATAAAPAYLDRHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMED-FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P    EL  H  I         +   F     V R      +      +    +   V 
Sbjct: 180 HPQHPSELLDHACIGGRFASGATIAWEFERHGEVVRVNPSGPLIVRVGAATDLAVDAAVA 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  L +  ++   D+  L  ++E         +  YP        L+AF +FI
Sbjct: 240 GVGIITLFEDWLQPHLDSGALEPVLEPWWQQFPGPFLYYPGRRYLPAPLRAFIDFI 295


>gi|157371671|ref|YP_001479660.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323435|gb|ABV42532.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 319

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 11/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VA  GSF+ AA +L +  SS+ R +  LE+ +   LF R  RGL LT+ G  
Sbjct: 27  EHLPIFLEVALLGSFSAAARKLGMVPSSLVRHVDALESALDATLFIRSTRGLMLTDAGEM 86

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +   +   + EL   S +P G LRI+     G+  +   L      YP + ++
Sbjct: 87  LQARAATLLSDISDIRAELASLSDRPQGTLRISCLPTFGKTYILPLLPLLAERYPQLFVE 146

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D + +  D AIR+ +  + S L   ++ T      A+P YL     P  +  
Sbjct: 147 LDLTERQTDPTQELLDAAIRIGEQ-KDSGLYASRIATQRWVMCASPAYLARYGRPADLNA 205

Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H LI  +    P C     W   +  P+ +     L+ + + +  +  +LG GI  L
Sbjct: 206 LPEHRLIARYHKQQPAC-----WAQILSAPLMDRCSLVLRCDDFTAQREAALLGLGITFL 260

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+++V  +     L+ ++ED       +Y   P A   + +L  F   +
Sbjct: 261 PNWVVGPDIQAGRLLPVLEDPRQEQQGIYLLRPVAK-VSARLNLFITLL 308


>gi|254460552|ref|ZP_05073968.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           HTCC2083]
 gi|206677141|gb|EDZ41628.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 302

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 10/291 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW  +R F  VA +GS + AA  L  SQ ++ RQI  LE ++G++LF R  RG  LT+
Sbjct: 7   NLDWSLIRAFLAVAETGSLSAAARSLSQSQPTLGRQIKLLEEQIGLRLFERQTRGFRLTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L     E+        +       K  G +RI  +  +  ++L   +       PD
Sbjct: 67  TGESLLEPAQEMRAAFGKLSLRAAGRDHKMQGTVRITASEVMAHHVLPSIIAGIREEEPD 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI+++  +   ++    AD A+R+ +  Q   +I +++ T  M  YAA  YL     P 
Sbjct: 127 IQIEIVPSDASENLLFREADIAVRMYRSTQ-LDVITKQISTAKMGIYAAKSYLAKHGTPE 185

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            I++L +H+++ +   D I   M D  W AT D          ++ +   +  +    G 
Sbjct: 186 RIEDLLEHSIVGYDRDDRIIVGMRDLGWPATRD-------FFDVRCDDQNTYWELVRAGC 238

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+          +P + R++ DV  P+  ++   PE ++ T ++K   + +
Sbjct: 239 GVGFTQQSFASVDPLIARVLPDVDLPTLPIWLAAPEIMRATPRIKRVWDML 289


>gi|91790306|ref|YP_551258.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699531|gb|ABE46360.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 302

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 125/291 (42%), Gaps = 8/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D+D + +F  VA  G+ +  A +  +  S +SR ++ +E   G +L +R   GL  T 
Sbjct: 3   HLDFDDMHLFARVAELGTLSAVAREREVPVSQVSRTLARIEKACGARLIHRSTHGLAPTA 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G    +    +   L+  + E  + + + SG +R+A +  + + LL  +L      +P 
Sbjct: 63  EGETFLQYCRRIIGTLDELEGEFAQQTQQASGWVRVAASTVMAEYLLVPSLASLHQRHPR 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++  ++++ +D++ D  D AIR   P    +++ R++  +    YA P YL+    P 
Sbjct: 123 LCVEFQVEDRLVDMAHDGIDIAIRTGVPPTD-TVVARQIGALGRRLYATPGYLQAHGTPR 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL +H LIT   +       F           E   +C + +S     +  + G GI
Sbjct: 182 HPDELRRHELITNSAVPMLNRWPFQSKGQSSMIAAE---ACWRSDSTGITTKLALHGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRN 288
           + +   + +       LV ++ D +      VY     +     K++A  +
Sbjct: 239 SRMATLVAEPLVRQGLLVPVLADFVDDQPSPVYAVTLTSRHRLPKIRACID 289


>gi|87122678|ref|ZP_01078554.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86162056|gb|EAQ63345.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 311

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 122/296 (41%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L V   VA   S T AA  L +   + S  +  +E E+G+ LF R  R L ++  
Sbjct: 1   MLLEDLHVVLKVAEFRSITAAATSLDMRTGTASAALKRVEAELGVSLFVRTTRQLRISSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G K      +    L   +  +++      G+LR+A + DLG+NL+   L EF+  YPD+
Sbjct: 61  GEKYIPQCQQALQILSQAKQNMKDGQDIVEGELRLAVSSDLGRNLVIPWLDEFMDDYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++  + + +ID   D  D A+R   P   S+L   K+  +     A   YL     P  
Sbjct: 121 SLRTNISDSNIDFYRDSVDIALRYGFP-DDSNLYGFKICNVPRLTCATHEYLAQHGTPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +HN + +   +   + D       +  I          N    + ++CV G GIA
Sbjct: 180 PHELSEHNSLNY--QLQDVVYDVWNFRHDNNDIKIKVKGNRISNDGDLVRRWCVAGKGIA 237

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +     +  +     +V IM +       ++   P     +  ++  R+ +  K+R
Sbjct: 238 VKSSLDMAADLLAQRVVNIMPEYHPTPTELWLICPSKQSISPAVRLLRDRLREKSR 293


>gi|260599888|ref|YP_003212459.1| putative transcriptional regulator [Cronobacter turicensis z3032]
 gi|260219065|emb|CBA34420.1| Putative transcriptional regulator [Cronobacter turicensis z3032]
          Length = 303

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 126/295 (42%), Gaps = 4/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  + + L  F  VAR GSFT AA QL ++QS++S+ I+GLE  + ++L  R  R ++LT
Sbjct: 1   MKRNLNDLFSFVTVAREGSFTRAAAQLGVTQSALSQAIAGLENRLKLRLLTRTTRRISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L       + ++E     L     KP+GK+RI     +   LL   L   L  YP
Sbjct: 61  AAGERLLEAIGNRFDEIEAELDMLSALRDKPAGKVRITCDPHVLHALLLPKLTPILRDYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ++   ++   DI  D  D  +RL   I    +       + M A A+P Y      P
Sbjct: 121 DIQMEFDANHGFRDIVADRFDAGVRLGGTIDKDMIAVPIGPPMRMAAAASPAYFAAHPVP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  HN I         +  +      D P+       L  N+   I+   + G G
Sbjct: 181 QTPHDLVHHNCINLRMTSAGGLYVWE-FDDKDGPVNVRVDGQLIFNTSSHIVHAALDGLG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA LP+    D+    NLVR++E    P    Y  YP   + +         +  
Sbjct: 240 IAFLPEGEFDDHFNAGNLVRVLETWCAPFPGYYLYYPSRKQPSPAFSMVVEALKE 294


>gi|109898520|ref|YP_661775.1| DNA-binding transcriptional activator GcvA [Pseudoalteromonas
           atlantica T6c]
 gi|109700801|gb|ABG40721.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 303

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 124/295 (42%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AAE+L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNALKAFEAAARHLSFTRAAEELFVTQAAVSHQIKSLEEFLSMKLFMRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +++  L+     L        G + +A         L   L +F    PDI I
Sbjct: 68  SYYLDLKDIFQALQEATQRLLARGE--KGAITVALPPSFAIQWLVPRLNQFSQSNPDIDI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +  +  ++  +KL T ++    +P   +  +    ++
Sbjct: 126 RIKAVDFDEGFLTDDVDVAIYYGRG-KWPNVYAQKLHTEYLTPVCSPLLFQGQKPLEKLE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+             NW+     P        +  +  + ++Q   LG GIAL 
Sbjct: 185 DLKHHLLLHDSSR----EAWKNWIKHFRIPGINVNQGAI-FSHSMLVLQAAALGQGIALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              + +   ++  LV   ++ +  +   Y    ++    GK+ AF  ++  +  D
Sbjct: 240 HSVLARPEIESGRLVCPFDERLIATNAYYAVCHQSQAELGKIVAFLQWLQSQVED 294


>gi|309701629|emb|CBJ00936.1| LysR-family transcriptional regulator [Escherichia coli ETEC
           H10407]
          Length = 299

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAVRLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|317401900|gb|EFV82507.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 306

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 123/289 (42%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR-GLTLTE 61
            DWD LR F  VAR+   + AA +L +  +++SR+I  LETE+   LF +    G  LTE
Sbjct: 2   LDWDSLRYFLEVARTQRVSAAARRLGVEHTTVSRRIRALETELDTLLFEKSRSAGFVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   + + +  L       SG LRI  T   G  +L     +F   YP 
Sbjct: 62  DGQRLFVHAEQMESTVHSARETLSGIGQALSGHLRIGATEGFGSYVLTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    +  KL    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCSKLCDYTLRLYGTPEYLARHPPIR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ I + D +      F+        +       L+  S ++     + G  +
Sbjct: 181 GRADLAGHSFIGYVDEL-----LFSERLRYLEDLLPASRVVLRSTSVVAQYHAALQGQSL 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I   +P L  ++E  +  + + +    E L+   ++     FI
Sbjct: 236 AILPCFIAAQDPRLKPVLEKEVEITRSFWMYCHEDLRKLKRVTVLWEFI 284


>gi|161525149|ref|YP_001580161.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350109|ref|YP_001945737.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160342578|gb|ABX15664.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189334131|dbj|BAG43201.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 300

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F  AA     S S +S  +  LET++G++L +R  R +  T
Sbjct: 1   MQVDLGDLNAFVAVARAKGFREAARTTGTSASGLSEAVRRLETQLGVRLLHRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L         ++E     +     +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGQRLLARLMPALSEVEAALDVVNSFRERPAGTLKLNVPLSAARLVLPSIVPRFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           +I+++L+++   +DI     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 EIRLELVVEESFVDILEVGCDAGIRYDERLEQD-MIAIPIGPRSQRFATAAAPEYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P    EL  H  +          + +F     V R      +      +   +++    
Sbjct: 180 RPKHPSELLDHACLRGRFASGSMPLWEFERDGKVVRVDPSGPLVVQIGGAVDLVVEAARS 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI  L +  ++   D+  L  ++E    P    Y  YP        L+AF +FI  +
Sbjct: 240 GLGIVHLYEEWLRPHLDSGALEPVLEGWWRPFSGPYLYYPGRRLVPAPLRAFIDFIKAE 298


>gi|126175576|ref|YP_001051725.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125998781|gb|ABN62856.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 315

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 7/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ +  SGSFT AA +L  S S +S+QI  LE E+ + L  R  R L LT+ G + 
Sbjct: 8   QMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVLTDAGQQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   +V+   +     + ++    SG +R+ ++   G   +   L+     YP+++ +L
Sbjct: 68  ARYCEQVFEATQNADAMMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKYPELRFEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+  +  D  I   + +     I + L   +    A+P YL     P   +EL
Sbjct: 128 SLFDHKADMLEEGLDLWITNHEQLN-EGYIAQHLAETNFVVVASPDYLLKHGVPHHPREL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +              A  D           +V+   ++    + G GI  +  
Sbjct: 187 AQHNCVIYQSKSRNYDRWS--FAKDDLEQTVNVAGNYRVDLAEAVRNAVIAGRGIGYVAT 244

Query: 247 YIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRN 288
           Y++ D   +  L++++ D        VY  YP       K K    
Sbjct: 245 YLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIE 290


>gi|260461471|ref|ZP_05809718.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259032541|gb|EEW33805.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 302

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 136/296 (45%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DW+ ++ F  VA +GS + AA +L  SQ ++ R IS LE  +G+ LF R   G  LTE
Sbjct: 3   DIDWNLIKSFVTVAETGSLSAAARKLSASQPTLGRHISELEQALGVTLFRRGRSGYALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      V  +     +  Q S     G +RIA +  +   +L   +    +  P 
Sbjct: 63  AGATLFERGKTVSEQASAFSLLAQGSVEAIEGTVRIAASEVVAAYVLPQMMARLDIEEPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++++  N+  ++    AD AIR+ KP Q+  L+ RK+  I + A AA  YL     PL
Sbjct: 123 IEVEIVASNQVENLLRRDADIAIRMVKPAQNE-LVARKVCDIPLCACAAISYLDRRGRPL 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H LI F     +  E          P+        + ++ + + +    G+GI
Sbjct: 182 EPGDLVDHALIGFD----RSDEMIRGFVQAGIPVTRNSF-RFRADNQMVLWEAVRAGNGI 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            L  + + + +P + +++  +  P+  V+      ++ + +++   +F+  + + +
Sbjct: 237 GLGQEPLAERDPLVEKVLPGLPLPALPVWLAMHRDVRTSVRIRRVADFLHEELKRY 292


>gi|190574609|ref|YP_001972454.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190012531|emb|CAQ46159.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 300

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 129/294 (43%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AAE L L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTTLDELKAFVAVVDSGSITAAAEALELTISATSRTLARLEDKLQTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+        +   ++  + ++    ++P G+LR+        +++   L+ F   YP
Sbjct: 61  EEGAAFLEYARTILATVDEAEEQMAARRLQPVGRLRVDAATPFMLHVIVPLLEGFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +    D+     D A R+   ++ S+L  R +    +   A+P YL+    P
Sbjct: 121 QVELELNSNEGITDLIEKRTDVAFRIG-VLRDSTLHARPIGHSRIRVVASPEYLRRQGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H+L+ F    P  + ++        P        +  +S  ++ Q  V G G
Sbjct: 180 TRVEQLREHDLLGFTQ--PSSLNEWPLQDADGGPFVIE--PAIASSSGETLRQMAVAGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFI 290
           IA L D++ +    +  LV++           +   Y        ++  F + +
Sbjct: 236 IACLSDFLTRQDRRDGRLVQLFARQTQEVRQPINAVYYRNTALAARITCFVDHV 289


>gi|161614819|ref|YP_001588784.1| hypothetical protein SPAB_02571 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364183|gb|ABX67951.1| hypothetical protein SPAB_02571 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 303

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 123/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 5   DLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  +    V+P G +++   + L    +   L +F+  YPD+ 
Sbjct: 65  QTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R +P + S L+ R L       +A+P  +     P +
Sbjct: 125 LQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPDLIARMGIPSA 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     ++      K +  +                 +     L++ +  ++G G+ 
Sbjct: 185 PAELSHWPGLSLAS--GKHIHRWELYGPQGARAEVHFTPRMITTDMLALREAAMVGVGVV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +VK+      LV ++E+       ++  +P        ++A  +F+  +
Sbjct: 243 QLPVLMVKEQLAAGELVAVLEEWEPRREVIHAVFPSRRGLLPSVRALVDFLTEE 296


>gi|46201846|ref|ZP_00054244.2| COG0583: Transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 311

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 7/292 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + + +F  V   GSF+ AA +L +  ++ISR++  LE  +G +L  R  R L+ T
Sbjct: 1   MADRLEAMSIFVAVVDCGSFSGAARRLGVPLATISRKVGELEAHLGARLLARSTRKLSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G         +  ++   +         P G L I   I  G+  +   +  FL  YP
Sbjct: 61  EAGQSYLAACRRILEQVVEAERAAAGEYATPKGDLVITAPIVFGRLHVLPVVAAFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I ++L L ++ + +  D+ D A+R+   +    L+   L ++H    A+P YL     P
Sbjct: 121 EIHVRLALSDRWVHLLDDHVDVAVRVGA-LSDGGLMAMGLGSVHRVVCASPSYLAVRGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H+ ++F  L       F      +  +     S L VN+  + +     G+G
Sbjct: 180 HHPKDLADHDCVSFDALASGKSWLFR---EGEADLSVVVQSRLIVNTAEAAVDAARAGAG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  +  Y   D      LV ++     P+  V   +        KL+AF +F
Sbjct: 237 LTQVLSYQAADAVRAGALVVVLRTFEPPALPVSLIHAGQGALPLKLRAFLDF 288


>gi|325528263|gb|EGD05430.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 303

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL   P+
Sbjct: 61  EGAAFLERCRGLLSEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLADKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 MQLSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPGYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L +HN + F     +  ++  W       I   R++  L  N    + ++   G G
Sbjct: 180 SLDDLLQHNCLAFNL---QGGQNRGWYFQRHGKIVTMRVTGNLDCNDGELLHRWVAEGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + +    +   L  ++++   P + +   YP+      +++ F +++
Sbjct: 237 LGWRSTWEIAAQLETGELETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|261325861|ref|ZP_05965058.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261301841|gb|EEY05338.1| transcriptional regulator [Brucella neotomae 5K33]
          Length = 293

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 133/284 (46%), Gaps = 7/284 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA +L L+ ++++R+++ LET +   L  R   G TLT  
Sbjct: 1   MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + ++  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P Q   L+ R+LV   +  YA   YL+      S
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPDQ-GRLVARRLVDYTLCLYAHRSYLEENGTLKS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L++H LI + + +       N        I        +V+S L  ++    G+GI 
Sbjct: 180 PEDLNRHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +L  +I   +P+LV ++ D +      +  Y E+ +   ++ A 
Sbjct: 235 ILHSFIACADPDLVPVLPDRVI-HRAYWLAYHESARTLRRVTAV 277


>gi|260557137|ref|ZP_05829353.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           19606]
 gi|332876297|ref|ZP_08444072.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|260409243|gb|EEX02545.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           19606]
 gi|322509369|gb|ADX04823.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323519393|gb|ADX93774.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735569|gb|EGJ66621.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 298

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 131/297 (44%), Gaps = 10/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + +F V      F+ AA++L+L +S+IS++++ LE ++G+ L +R +R   L+E G
Sbjct: 6   NLNDVYLFVVAVEHQGFSAAAKRLNLPKSTISKRVAILEKKLGLTLIHRSSRSFVLSEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++       +    +  L     +PSG +R++ ++ + Q LL   L E    YP + 
Sbjct: 66  KLFYQHAKNAVDEFRYAEENLLIQQQEPSGVVRLSASVPIAQYLLSDCLPELAERYPKLL 125

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+ + ++ +D+  +  D  IR   +P+  S LIQR L    + A AAP YL       +
Sbjct: 126 LQVEVTDRYVDVMSENFDIVIRSHFQPLPDSGLIQRVLKNDKIIAVAAPAYLMKSSPIHT 185

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L KH  I     + P   ++ N    + RP           N    +      G GI
Sbjct: 186 PEDLLKHEGIWPELQMNPWHFQNINGQKEIVRPNI-----RFVANESEILKGAAKRGLGI 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LLP+    +     +L+ ++ +    S T              +    +F+  K +
Sbjct: 241 TLLPETFCMNELSEGSLIHVLPEWSAGSVTTSLLMLTRRGLLPSVNITADFLVEKLK 297


>gi|187921330|ref|YP_001890362.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719768|gb|ACD20991.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 295

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 121/292 (41%), Gaps = 17/292 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F     +GSFT AA  L  + S++SR +  LE  +GI+LF R  R   LT +G
Sbjct: 5   NLSGLSAFVRAVEAGSFTGAARLLGTTPSAVSRSVGRLERRLGIRLFRRSTRVTVLTIEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   + +   +E     L        GKLRI+    L + LL    K  +  +P + 
Sbjct: 65  QTYYERVAPLIRGIEEAGNALTAPLDAV-GKLRISVPAALARILLDPLTKHLMARHPGLL 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            ++ + +  +D+  +  D  IR  + I  S+L  RKL  + +   AAP YL     P SI
Sbjct: 124 FEVNVSDHHVDVIREGFDLVIRAGEVI-DSALHARKLGQLPLVLAAAPDYLSRHGVPKSI 182

Query: 184 QELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +L  H  + +   G ++P    D          +          +S  ++    + G G
Sbjct: 183 SDLSMHRHVRYRLAGRVVPVMFAD---------GVSVQPEGAFDADSGEAMRIAALNGLG 233

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           IA +   +++++     L  ++ D+      ++  +        ++K F  F
Sbjct: 234 IAQILKAMIQEDVDAGRLCIVLPDLALRPVPLHVMHGFGRSMPPRMKIFIEF 285


>gi|52425744|ref|YP_088881.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307796|gb|AAU38296.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 299

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F+ +   GS   AA +L ++  ++S  +  LE  +G+ LF R  R + LTE G +L 
Sbjct: 9   LTYFHEIVIEGSIAGAARKLEVAPPAVSNALKLLERHLGLPLFTRTTRKMELTEAGQRLF 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T ++   L++    +++ + KPSG +RI T+I     +++ +  EF   YPDI++++ 
Sbjct: 69  ESTKDMLRGLDSVMESVRDLTEKPSGLVRITTSIISYLLVIRPHFAEFCERYPDIRLEIS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQEL 186
           +++  +DI  +  D  +R    ++  +++ +KL+  + +  YA+  YL+   +P ++++L
Sbjct: 129 VNDGIVDIVKEGFDVGMRFGDRLE-QNVVAKKLLDPVRLGLYASESYLRKYGKPETLEDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H L+ +  +               R I       +  N+    +     G  +  L +
Sbjct: 188 SQHKLLGYRFVTANRTYPLT-FNQDGREISIDMPYSVLTNNLTVELDTVRQGVALGQLFE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +V    D  N + +++   T    +Y  Y +  +  GK++A  +F+  K +
Sbjct: 247 PVVNALHDRKNFIPVLDAHWTQYPALYLFYMQHSQKAGKVRALIDFLEEKIK 298


>gi|254253367|ref|ZP_04946685.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124895976|gb|EAY69856.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 305

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 120/290 (41%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AAE+L ++  ++S+ I  LET +G++LF R  RG+ LT  G 
Sbjct: 9   LNALRAFEAAARHLSVKSAAEELSVTPGAVSQMIRTLETHLGVQLFERVNRGILLTAAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +  ++   SG L ++ T       L   L +F    PDI +
Sbjct: 69  DYLPPVRNAFRQIADASQRVSGAAD--SGVLTVSVTPFFASAWLVPRLGQFRHACPDIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  +   D + D  D AIR     +   L    L+T+ + A A+P  +     P +  
Sbjct: 127 QIVASHALADFARDGVDVAIRHGLG-RYVGLCSEHLLTVEIVALASPDLVARLGMPRTPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L         D   K    +     +D   G PR      +    ++Q  V G G  LL
Sbjct: 186 DLVSWP--HLHDAERKGWHVWFDAQRID-DFGPPRGPAF--DDASLLLQAIVAGQGAGLL 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P  +V+    +  LV++ +      F  Y  YP       K+ AFR +I 
Sbjct: 241 PAAMVRGELADGRLVQLADVARLDDFAYYLVYPPHHAERNKVAAFREWIL 290


>gi|113968752|ref|YP_732545.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113883436|gb|ABI37488.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 305

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 121/296 (40%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F  VA  GS + AA ++ LS +S S  I  LE ++   LF R  R L LT Q
Sbjct: 1   MLLNDLALFVRVADCGSISAAAAEMELSAASASAAIKRLEKQLDTSLFVRTTRSLRLTAQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L   +  +     K SG L ++ + D G+NL    L +FLL +P +
Sbjct: 61  GERYLIHCRRALSDLALGEQAIASDKGKISGTLSLSVSSDFGRNLFVPWLDDFLLDFPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L L +       D  D A+R  KP Q S+ +   + ++     A+P YL    +P +
Sbjct: 121 QVRLHLGDNISSFYHDKIDVAVRYGKP-QDSNQVAFPICSVDRVLCASPEYLAKFGKPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L +HN + +   +     D        +            N      ++ V G G+ 
Sbjct: 180 LEQLTQHNCLFYK--LDDRTHDQWQFERDGQEFKIRVTGNRSANDAEIARRWAVAGKGLV 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                 + ++     LV ++ +    +  +Y   P     T  +   R  +  + +
Sbjct: 238 FKSSLDLAEDIMAGRLVPLLPEYRGEAVNLYLVCPGREHVTPVVLLLREMLRQQTQ 293


>gi|59714331|ref|YP_207106.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59482579|gb|AAW88218.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 320

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   ++L +F  V + GSFT AA    +  S++S+QI  LE E+G++L  R  R  +LT
Sbjct: 1   MSL-VNQLSLFIDVVQQGSFTKAAALHDMDNSALSKQIKKLEAELGVQLLNRSTRTFSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G ++     ++   L+  +         P G++RI   + +GQ  LQ  + +F+  YP
Sbjct: 60  PAGEEILEQAYQLVGSLDNVKSIADSYQAVPKGRIRITAPLHIGQGYLQPVISQFMTTYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L++D+K  DI  ++ D A RL + +  SSLI +K+  I     A+   ++   EP
Sbjct: 120 DVEVVLMMDDKRSDIISEHFDVAFRLGR-LDDSSLIAKKVADIRGVILASHSLIERFGEP 178

Query: 181 LSIQELDKHNLITFGD-LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            + +EL     + + +  +              +          +VN   +++     G 
Sbjct: 179 STPEELVNLPSVIYSNGTLTVDTVRLGESPDSSQFKSYKMKGNYKVNDVRTLLSAVQDGL 238

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFR 287
           G A++    ++ +     L  ++ D         +Y  YP   + T  ++ F 
Sbjct: 239 GYAVVASSNLERSIESMGLTTLLTDYPLCNQGLAIYALYPHRKQ-TALVREFI 290


>gi|299530073|ref|ZP_07043500.1| LysR family transcriptional regulator [Comamonas testosteroni S44]
 gi|298722053|gb|EFI62983.1| LysR family transcriptional regulator [Comamonas testosteroni S44]
          Length = 300

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 132/296 (44%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T A+E L L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLDELQAFVAVVDTGSITAASELLGLTISATSRTLGRLEEKLQTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+   +    +   ++  +  +    ++P+G+LR+        ++L   +  F   YP
Sbjct: 61  EEGATFLQHARAILASVDEAEELMAARRMRPAGRLRVDAATPFMLHVLVPLIAGFRARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  +   ID+     D A R+   ++ S+L  R +    +   A+P YLK    P
Sbjct: 121 EVELELNSNEGIIDLLERRTDVAFRIG-VLKDSTLHARPVGISRIRVLASPAYLKRHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  +L +H+L+ F    P+ + D+  L   D      R   +  +S  ++ Q  + G G
Sbjct: 180 ASPTQLAQHSLLGFTQ--PESLNDWP-LRDADGNAVRIR-PDIASSSGETLRQMALAGLG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L D++    ++  NLV++           V   Y        ++  F + +  
Sbjct: 236 IVCLSDFMTRADREQGNLVQLFGKQTLDICQPVNAVYYRNTALAARITCFVDHVVE 291


>gi|27381047|ref|NP_772576.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27354213|dbj|BAC51201.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 307

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 128/297 (43%), Gaps = 7/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++VF +    GS   A  +L  S +++SR I+ LE  VG +L +R  R + L+E
Sbjct: 1   MDRLDAMKVFVLAVDEGSLAAAGRKLGRSPAAVSRAIAFLEERVGAELLHRTTRSIKLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +   +   V  +LE            P G L I   +  G+ +L+  L  FL  YP 
Sbjct: 61  EGERYVAICRRVLTELEEADDIAAGPRAAPRGLLTITAPVVSGEMVLRPILDAFLDAYPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +L+L ++ +++  +  D A+R+   +  S+++  ++  I     AAP YLK      
Sbjct: 121 VSAKLLLFDRAVNLIEEGVDIALRIGH-LADSAMVAMRIGEISRVVVAAPRYLKQHPRIT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L KH ++    L       F   A             L VNS  + +   V G G+
Sbjct: 180 ELGDLAKHQIVAMAHLPNSWT--FAPQAGSSAARTVQFTPRLVVNSTYAAVASAVAGRGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A +  Y V +      L  ++     P    +   P+   +  K++AF +F   + +
Sbjct: 238 ARMYSYQVAEQVARGELEIVLAADQDPEMPAHLICPQGRLSVPKVRAFTDFAVPRLK 294


>gi|107027813|ref|YP_625324.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693477|ref|YP_839010.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737246|ref|YP_001778506.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105897187|gb|ABF80351.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651477|gb|ABK12117.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169819434|gb|ACA94016.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 297

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 121/291 (41%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++ +L     VAR  SFT AA QL +SQS +S  I G+ET +G++L  R  R +++TE G
Sbjct: 5   NYSELLALIAVARERSFTRAAAQLGISQSMLSHTIRGMETRLGVRLLTRTTRSVSVTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +V    ++ +E     + E    P+G +RI         LL   L + L LYP I+
Sbjct: 65  ERLLQVVEPRFNDIEAELKSIIEMRDVPAGTIRITAPEHAIDTLLWPRLAKILALYPQIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++  D    DI     D  +RL   +       R          AAP Y  +   P   
Sbjct: 125 VEVNADYALTDIVQSRYDFGVRLGDELSKDISAVRIGPDQRFAIVAAPSYFASKPVPTKP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P       W L    R +       L  N    ++   + G G+A
Sbjct: 185 QDLVCHDCINL--RLPTLGNLCAWELGKGQRKVNVRADGRLVFNGIYQVLNAALSGYGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L + + +   +   LV +++     S   +  Y    + +  +    + +
Sbjct: 243 YLHEDLAQPHLETGRLVPVLKPWWRTSPGYHIYYSAQREISRAMHVLIDAL 293


>gi|332161431|ref|YP_004298008.1| LysR-family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318605408|emb|CBY26906.1| putative transcriptional regulator, LysR family [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325665661|gb|ADZ42305.1| LysR-family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 305

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 129/297 (43%), Gaps = 6/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V  S SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+
Sbjct: 4   ALDFNTLKVFIAVVESESFVGASKVLEMPTSNVSRCISQLEEKLNLQLIERSTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   YPD
Sbjct: 64  AGHLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSIVADFACQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++  + +    +   D  D AI + R  +  S  I R L+TI     AAP  ++    P
Sbjct: 124 LEVSCVTNLSGFESLRDDLDLAIIITRGQMDDSDYIARHLLTIPCTIVAAPSIIQRYGTP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             IQ+ +    IT    +      + ++    R          +VNS     +  + G G
Sbjct: 184 SHIQQFEALPCITTVSALKGA--PWQFVNKKGRFETIKVKGHYRVNSGEMAGRAALAGVG 241

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            A+L     +    +  L+ I  +       ++  Y +      K +A  +F+  K 
Sbjct: 242 FAILSKQACQPYIKDGRLIEIEFEQSAAPLQLFALYSDRRYLPAKTRALIDFMLQKL 298


>gi|149201706|ref|ZP_01878680.1| putative LysR-family transcriptional regulator [Roseovarius sp.
           TM1035]
 gi|149144754|gb|EDM32783.1| putative LysR-family transcriptional regulator [Roseovarius sp.
           TM1035]
          Length = 294

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 118/290 (40%), Gaps = 11/290 (3%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            VA   +F  AA++L +++S++S+ I  LE  +GI++  R  R + LTE G++L      
Sbjct: 11  AVAEEQNFRAAADRLGVTRSAVSQGIRRLEDALGIQVVMRTTRSVRLTEAGARLVESLRA 70

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
               ++      ++    PSG+LR+A T    + L    L  F   +P + + + + +  
Sbjct: 71  PMAAVQDALEANED---VPSGRLRLAVTSIAEEFLSGPLLARFAEAHPKVTVDVTVIDDA 127

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           +DI     D  +RL + I+   +           A A P Y+     P   ++L  H  +
Sbjct: 128 LDIVAGGYDAGVRLGEVIEQDMIAVPVGGPQREVAAATPAYIARYGAPNHPKDLLDHRCV 187

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK-- 250
            +          +       +P        +  N    +++  +   GI   P   ++  
Sbjct: 188 GWRPAPDTAPWRWE-FEENGKPFDVMVDPQVTTNDLRLMLRVALADGGITFAPWDCMREH 246

Query: 251 -DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            D+  LV ++   + P    Y  +P+      KL+A  N I    R W+F
Sbjct: 247 FDSGALVPLLTGYLPPFSGFYLYFPQRQNMAPKLRALINHI----RQWRF 292


>gi|186471054|ref|YP_001862372.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197363|gb|ACC75326.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 297

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 13/268 (4%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            QL++    +SR+I+ LE ++G++LF+R  R LTLT +G         +       + E+
Sbjct: 23  RQLNVVPMQVSRRIAALEEDLGVRLFHRTTRSLTLTAEGEAFVPYARAMVAAEAGARAEV 82

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             SS   SG LR+      GQ+++   L   L   P++++ L L ++ +DI     D AI
Sbjct: 83  SPSSGTASGILRLTAPSGFGQSVVLPMLPGLLEANPELRLDLDLSDRQVDIVGQGLDLAI 142

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R+  P++ S L+ RK+        A+P YLK    P +  ELD+H  I    +       
Sbjct: 143 RIA-PLEDSELVARKIAPNPRLICASPEYLKKHGRPSTSAELDQHRCIRLDSVG------ 195

Query: 205 FNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIV---KDNPNLVRI-M 259
            +W   V   +   RI   +   S  +     V G G+A+L  + V     + +LV++ +
Sbjct: 196 -SWPLVVGGKLIRKRIEGYVTTTSVEAARTAAVQGLGLAMLTSWDVFRQLADHSLVQVQL 254

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFR 287
           ED      +V+   P       ++  F 
Sbjct: 255 EDAAMEDLSVWAVIPSRRYVPNRVNVFL 282


>gi|167550377|ref|ZP_02344134.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205324613|gb|EDZ12452.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 303

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 124/294 (42%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L+  +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 5   DLNDFAWFVHVVEEGGFAAAGRALNEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  +    V+P G +++   + L    +   L +F+  YPD+ 
Sbjct: 65  QTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R +P + S L+ R L       +A+P  +     P +
Sbjct: 125 LQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPDLIARMGIPSA 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     ++      K +  +                 +     L++ +  ++G G+ 
Sbjct: 185 PAELSHWPGLSLAS--GKHIHRWELYGPQGARAEVHFTPRMITTDMLALREAAMVGVGLV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +VK+      LV ++E+       ++  +P        ++A  +F+  +
Sbjct: 243 QLPVLMVKEQLAAGELVAVLEEWEPRREVIHAVFPSRRGLLPSVRALVDFLTEE 296


>gi|58040068|ref|YP_192032.1| transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58002482|gb|AAW61376.1| Transcriptional regulator [Gluconobacter oxydans 621H]
          Length = 319

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 134/297 (45%), Gaps = 13/297 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++   VF  VA SGSF  AA  L LS  ++S+ +  LE  +G  LF R AR L+LT +G
Sbjct: 6   DFEGWAVFARVAESGSFAAAARSLGLSAPTVSKIMGRLEHRLGATLFQRSARHLSLTAEG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++       +  + E  + EL+E +  P G +R+A  +  G+ +L   L  FL  YPDI 
Sbjct: 66  AECLDRARRILSEGEGLETELREGTATPRGMIRLAAPMTFGREVLGPALPGFLEQYPDIT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSL--IQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ LD+  +D+     + A+R+   +   ++      L         +  +     E  
Sbjct: 126 LEMDLDDGVVDLLGGRFEAAVRITSGLLRPAVSGQAFLLCRSVTRFVCSEQFRARLGEVE 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           + ++L     + + +     + DF  L   D      R+   +  NS   ++     G G
Sbjct: 186 NPEDLTGQPGLLYTNA---AVPDFLRLRHTDGRQASVRLKGRVSANSGDMLLPAIRAGLG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY----PEALKNTGKLKAFRNFI 290
           IALLPD++++   ++  +V ++        +V+F          + + +L+    ++
Sbjct: 243 IALLPDFMLRPDLESGRIVEVLPGWTGAELSVWFIVTGCGATRTQMSARLRVLLAYL 299


>gi|149909032|ref|ZP_01897691.1| substrate-binding transcriptional regulator, LysR family [Moritella
           sp. PE36]
 gi|149808043|gb|EDM67986.1| substrate-binding transcriptional regulator, LysR family [Moritella
           sp. PE36]
          Length = 291

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 126/293 (43%), Gaps = 14/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F  +A+  SFT AA+ L +S+  +S QI  LE E    L  R  R + LT +G 
Sbjct: 7   IECLMLFVEIAQQLSFTKAAQNLSISKGYLSDQIRKLEAEFKCPLLVRTTRSVRLTPEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           K+     ++   +      + +     SG LRI   I   +  L     +F L+YPDI  
Sbjct: 67  KILEQGKKIKATMLDLDRNVHQEHNAISGSLRITAPILFTERFLLDICHDFKLIYPDIHF 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +     + D++ D  D A R        +++ ++L +      A+P YL     P +I 
Sbjct: 127 IIDSSYTNYDLNQDDFDLAFRATLQ-PPQNMVAKELFSYQHCLCASPEYLAEYGTPQNIN 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ ++        +E   W       I +     L +N +  +    + G GI  +
Sbjct: 186 DLSSHHCLS-------AVETQIWPLKSADAIIK---GWLTINDHHLLKLQALAGRGIIRV 235

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +Y V        L +++E+   P  ++Y  +P+ +  + KLKAF  F+  + 
Sbjct: 236 ANYYVDRELKEGRLQKVLENEYIPGLSIYLLHPQLIYPSAKLKAFIAFVQERL 288


>gi|254250460|ref|ZP_04943779.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           PC184]
 gi|124879594|gb|EAY66950.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           PC184]
          Length = 300

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 145/300 (48%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++  F  +A +GS T AA++LH   S +SR +  LE ++   L  R  R L +T
Sbjct: 1   MKTTLDEMLAFVTIADTGSLTGAADKLHQPTSVMSRILRRLEEKLDTTLIRRTTRRLEMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        E+   +E  + ++      P+G+LRI   +   Q+++   +  F   YP
Sbjct: 61  EEGKLFLDYAREIIASVEFAEEQIVSQREAPAGRLRINAAMPFMQHVIAPMMPGFRDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+ +L   ++ ID+     D AIR+ + ++ S+L  R+L +  +   A+P YL+    P
Sbjct: 121 AIEAELHTSDEIIDLLEQRTDVAIRIGE-LRDSTLHARRLGSSRLRILASPAYLEKAGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            S+ +L  H L+ F  + P+ +  +      D   G  RI   LQ +S  +++   + G+
Sbjct: 180 ASVADLANHTLLGF--VQPETLNHWPLRTADD---GVYRIHPALQASSGETLLTLALNGA 234

Query: 240 GIALLPDYIV---KDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+  L DY+    + +  LV ++ +D +     ++  +      + ++ +F +++  + +
Sbjct: 235 GVVCLADYMTGTHRRDGGLVELLVDDTLEFRQPIHAVFYRNTTLSSRIVSFLDYVSAQLK 294


>gi|115361078|ref|YP_778215.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286406|gb|ABI91881.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 310

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 124/301 (41%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F  AA   + S S +S  +  LE ++G++L +R  R ++ T
Sbjct: 11  MQVDLGDLNAFVAVARAKGFREAARVANASASGLSEAVRRLEAQLGVRLLHRTTRSVSPT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    +    ++E     +     KP G L++   +   + +L   +  FL  YP
Sbjct: 71  EAGARLLARLTPALSEVEAALDVVNTFREKPVGTLKLNVPMSAARLVLPSIVPRFLDAYP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           +I+++++ D   +DI     D  IR  + ++   +I   +      +   AAP YL    
Sbjct: 131 EIRLEVVADESFVDILAAGCDAGIRYDERLEQD-MIAVPIGPRSQRLATAAAPAYLDRRG 189

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCV 236
            P   ++L  H  +  G      M  + +    +    EP   +      +   I+    
Sbjct: 190 RPAHPRDLLDHACLR-GRFASGAMPAWEYERDGEVVRVEPSGPLVVQIGGAVDLIVDAAC 248

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI  L +  ++    +  L  +++    P    Y  YP        L+AF +FI  +
Sbjct: 249 AGLGIVHLYEDWLRPYFASGALEPVLDGWWRPFSGPYLYYPGRRFVPAPLRAFVDFIKAE 308

Query: 294 A 294
           A
Sbjct: 309 A 309


>gi|255744686|ref|ZP_05418637.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholera CIRS 101]
 gi|262191487|ref|ZP_06049672.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae CT 5369-93]
 gi|255737717|gb|EET93111.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholera CIRS 101]
 gi|262032635|gb|EEY51188.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae CT 5369-93]
 gi|327483632|gb|AEA78039.1| Glycine cleavage system transcriptional activator GcvA [Vibrio
           cholerae LMA3894-4]
          Length = 294

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 118/288 (40%), Gaps = 11/288 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G       
Sbjct: 2   FEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQSYFLDI 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            +++  L     +L E S    G L I+         L   L +F    PDI +++   +
Sbjct: 62  KDIFSSLAEATDKLLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDVRIKAVD 119

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
            D     D  D AI   +      L   KL    +    +P  L   +    + +L  H 
Sbjct: 120 MDEGSLTDDVDVAIYYGRG-SWPGLRADKLYQEFLIPLCSPALLLGNKPMEKLSDLAYHT 178

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           L+          +D+   A  +             +    ++Q    G G+AL  + + +
Sbjct: 179 LLH-----DTSRKDWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALGNNVLAQ 233

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 234 PEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 281


>gi|107028458|ref|YP_625553.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686453|ref|YP_839700.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897622|gb|ABF80580.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652168|gb|ABK12807.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 300

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 146/300 (48%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++  F  +A +GS T AA++LH   S +SR +  LE ++   L  R  R L +T
Sbjct: 1   MKTTLDEMLAFVTIADTGSLTGAADKLHQPTSVMSRILRRLEEKLDTTLIRRTTRRLEMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        E+   +E  + ++      P+G+LRI   +   Q+++   +  F   YP
Sbjct: 61  EEGKLFLDYAREIIASVEFAEEQIVSQREAPAGRLRINAAMPFMQHVIAPMMPGFRDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+ +L   ++ ID+     D AIR+ + ++ S+L  R+L +  +   A+P YL+    P
Sbjct: 121 AIEAELHTSDEIIDLLEQRTDVAIRIGE-LRDSTLHARRLGSSRLRILASPAYLEKAGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            S+ +L  H L+ F  + P+ +  +      D   G  RI   LQ +S  +++   + G+
Sbjct: 180 ASVADLANHTLLGF--VQPETLNHWPLRTADD---GVYRIHPALQASSGETLLTLALNGA 234

Query: 240 GIALLPDYIV---KDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+  L DY+    + + +LV ++ +D +     ++  +      + ++ +F +++  + +
Sbjct: 235 GVVCLADYMTGTHRRDGSLVELLVDDTLEFRQPIHAVFYRNTTLSSRIVSFLDYVSAQLK 294


>gi|254719152|ref|ZP_05180963.1| LysR family transcriptional regulator [Brucella sp. 83/13]
 gi|265984147|ref|ZP_06096882.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306838144|ref|ZP_07471000.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
 gi|264662739|gb|EEZ33000.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306406734|gb|EFM62957.1| LysR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 310

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 121/293 (41%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  SF+ AA++L L+Q ++SRQI+ LE ++G  LF R +R + L+E G   
Sbjct: 14  ALAAFDAVARHESFSAAADELSLTQGAVSRQIASLEEQLGAALFDRTSRNVVLSEAGRVY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        +    +++          L +A     G   L   +  F+  YP I +  
Sbjct: 74  LQAIGPALASIRAASLQVMSQMRGT--TLNLAFLPTFGTRWLIPRIPRFVAQYPHIILNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   +  D AI + +P    +     L+   +    +P +LK+     S  +L
Sbjct: 132 ATRIGQFDFDREGLDAAIHIGQP-DWPNAECTFLMDETVAPVCSPAFLKDHPV-TSPHDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L             F  L      I  P    ++   + ++ Q CV G G+ L+P 
Sbjct: 190 LRLPLFNMASRPGAWEHWFRSLG-----ITTPVPGGMRFEQFSNVSQACVAGLGMGLMPL 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 245 FLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEVRN 297


>gi|304410991|ref|ZP_07392607.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307301886|ref|ZP_07581644.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304350526|gb|EFM14928.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306913924|gb|EFN44345.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 315

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 7/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ +  SGSFT AA +L  S S +S+QI  LE E+ + L  R  R L LT+ G + 
Sbjct: 8   QMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVLTDAGQQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   +V+   +     + ++    SG +R+ ++   G   +   L+     YP+++ +L
Sbjct: 68  ARYCEQVFEATQNADAMMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKYPELRFEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+  +  D  I   + +     I + L   +    A+P YL     P   +EL
Sbjct: 128 SLFDHKADMLEEGLDLWITNHEQLN-EGYIAQHLAETNFVVVASPDYLLKHGIPHHPREL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +              A  D           +V+   ++    + G GI  +  
Sbjct: 187 AQHNCVIYQSKSRNYDRWS--FAKDDIEQTVNVAGNYRVDLAEAVRNAVIAGRGIGYVAT 244

Query: 247 YIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRN 288
           Y++ D   +  L++++ D        VY  YP       K K    
Sbjct: 245 YLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIE 290


>gi|300309577|ref|YP_003773669.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300072362|gb|ADJ61761.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 301

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 123/289 (42%), Gaps = 8/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F    R GSFT AA +LHL+QS+ISRQI+ LE  +G KLF R  R L LT  G +  
Sbjct: 12  LIAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRALRLTVSGQRYA 71

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +   +         ++ +       +L +A +  +    L   L  F   +PD  ++L+
Sbjct: 72  ALVQRLLVDCAEATEDIMKRKGHQ--ELTVACSQGVAVLWLTPRLARFRARHPDCHLRLV 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +++    +S    D  I   +    + L  R+L    +    +P YL      L+ ++L 
Sbjct: 130 VNDSLAQLSETDFDMGIYFLRDGPPAGLAARRLYDEEVFPVCSPGYLD--GRLLAPEDLR 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L+T  D   + M   NW+A    P        L  N Y  ++Q  + G G+ L   +
Sbjct: 188 HQTLLTLEDGQRQWMSWQNWMAHNGMPDVRIEHQIL-SNQYPVLLQLAMEGQGVVLAWRH 246

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++    +   LVR  +   +     Y  +P         +AFR+++  +
Sbjct: 247 MIDACMEQGLLVRACQASASLGGGYYAVWPRDRIEHAAARAFRSWLVAE 295


>gi|167836576|ref|ZP_02463459.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 306

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 121/292 (41%), Gaps = 7/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G +  
Sbjct: 11  LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYC 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T++ Y ++   +  L ++  +P G LRI+        +    L EF   YP + +++ 
Sbjct: 71  DATAQPYRQVVEARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFHRYPKVSVEIR 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  +DI  +  D  IRL   +    +  R    +     A P YL     P  + +L 
Sbjct: 131 YEDHLVDIVKERLDAGIRLADRLHPGMVGVRIAPALTCALVATPGYLAQHGTPAKVADLA 190

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL-- 244
           +H  I F    PK      W L    R +              +++     G+GIA +  
Sbjct: 191 RHMCIRF--RFPKSGRLHKWPLRDGRRDVDLDVAGRFVSTDTGAVIDAARAGAGIAFVFM 248

Query: 245 PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + I  D     L  ++         ++  Y        KL+AF   +   A
Sbjct: 249 RERIAGDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLREHA 300


>gi|194433835|ref|ZP_03066109.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|194417938|gb|EDX34033.1| transcriptional regulator, LysR family [Shigella dysenteriae 1012]
 gi|320180228|gb|EFW55163.1| LysR family transcriptional regulator YcjZ [Shigella boydii ATCC
           9905]
 gi|332098084|gb|EGJ03057.1| hypothetical protein SD15574_0411 [Shigella dysenteriae 155-74]
          Length = 299

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 120/285 (42%), Gaps = 4/285 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I+D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 IIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAVNLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             V+       L+R+++         +  YP           F +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFID 291


>gi|239816232|ref|YP_002945142.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239802809|gb|ACS19876.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 298

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 134/296 (45%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +ARSG+   AA +L +  ++++R+I  LE EVG  LF R + G  LTE 
Sbjct: 1   MDWDNLRYFLELARSGTLMSAARRLEVDHTTVARRIQALEKEVGAPLFSRESGGHRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL      +    +  +     S    SG +RI  T   G  +L   L  F   +P +
Sbjct: 61  GRKLQPQVEAMESAFQAVESTAPASQEGLSGLIRIGATEGFGTVVLAPQLALFAQQHPRL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L+   + + +S   AD  I L +P +   ++  KL    +  YA+  YL   +   +
Sbjct: 121 TIDLLAMPRLVHLSRREADIVISLERPARGP-VVVSKLTDYTLRLYASKKYLAAHKPIKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H  I++ D +      F+        +  P    L+  S L+  +  + G+GIA
Sbjct: 180 REDLRGHTFISYVDDL-----LFSKELQYLDELHRPDAFALRSTSVLAQHRAVLAGAGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LP +I +++  L  ++      + T +   P   K+  +++A   F+    +  +
Sbjct: 235 VLPAFIAENDGALKPVLPGQANFTRTFWMSMPAETKHLVRMQAVWEFLRETVQAQR 290


>gi|170731818|ref|YP_001763765.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169815060|gb|ACA89643.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 306

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 17/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F  V    SF+ AA +L ++ SS++R+I  LET++GI+L +R    L  TE G  L
Sbjct: 8   HLALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   + +  +L   Q +L     +P G LR+      G+  L   L  F+  YP +Q+ L
Sbjct: 68  YGRATRMLAELRGLQEDLHSQHDEPGGLLRVDCPAPFGRRHLMAALAAFMQRYPALQVDL 127

Query: 127 ILDNKDIDISMDY----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +L +  +D+         D A+R+  P++ +  +   L        A+  YL    EP S
Sbjct: 128 VLTDSMVDLQGARLGSDVDLAVRIG-PLEDTRFVATVLAPQRRVLCASAAYLARRGEPAS 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  H+ + +    P     F     V      P     + N   ++++  + G G+A
Sbjct: 187 PDALAGHDCLAWHGAPPPGAWRFGERRHV------PAQPRFRSNHSEALLEAAIDGLGLA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  D   +  L  ++          T++    +A   + +      F+
Sbjct: 241 HLPTWLAADALRDGRLRALLPQYAAAPEQATIHVLRQQAR-GSARTSRLVAFL 292


>gi|300312373|ref|YP_003776465.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075158|gb|ADJ64557.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 305

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 136/308 (44%), Gaps = 17/308 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  + RS     AA++L +  S++SR++   E +VG +LF R+  G  LT  
Sbjct: 2   LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L     +V   L     EL   + K SG++R+  T   G  +L  ++  F    P I
Sbjct: 62  GYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++   + +++S   AD ++ + +P+ S + +  KL    +  YA+  YL       +
Sbjct: 122 TVDMLPMPRFVNLSKHEADISVSIERPL-SGNYVVTKLSDYVLKLYASRDYLAQHPPIHT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +H+ I + D +      F+        +        +  S ++       G  +A
Sbjct: 181 MDDLAQHHFIGYIDDL-----VFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALA 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF-----------RNFIF 291
           +LP ++ + +  L  ++   I  + + +       ++  ++ A            R+F+ 
Sbjct: 236 ILPCFLAQQSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYLRECVELNRDFLM 295

Query: 292 LKARDWKF 299
            ++R  ++
Sbjct: 296 GQSRRMRW 303


>gi|54303554|ref|YP_133547.1| hypothetical protein PBPRB1899 [Photobacterium profundum SS9]
 gi|46916984|emb|CAG23747.1| hypothetical protein PBPRB1899 [Photobacterium profundum SS9]
          Length = 300

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 127/299 (42%), Gaps = 14/299 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D + +F  V   GSFT AA+   + +S++SR+I  LE  +  +L  R  R L LTE 
Sbjct: 1   MKLDDMELFVKVVEQGSFTKAADYCEIPKSTVSRRIRDLEQSLKTRLLERTTRRLHLTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++  ++ETT+ E+ +     SGKL +     + +  +  ++ +F   YPDI
Sbjct: 61  GEAFYHKAQQILKEVETTEKEIAQKQGDYSGKLTVYAPDCILELCV-DHVAQFCQDYPDI 119

Query: 123 QIQLILDNKDIDISMD-YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + L  D++   +  +   D  + +      SS I R L T+    +A+P YL    EP 
Sbjct: 120 SLNLHSDSQPQHLMAEKRFDLLLNIGTQ-SDSSFIARPLATLSYDYFASPDYLAIDGEPK 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L + + +T      K ME +            P      V+S   +    V   GI
Sbjct: 179 TPADLHQFSTLTLNQNNQKAMEWY------FNQQELPLTHKCTVDSPYVLRALAVANQGI 232

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF--IFLKAR 295
             LP  +V +      LVR+ +        +Y  Y        K+K   +   + L+AR
Sbjct: 233 CCLPTIMVSNEIQANKLVRLFDGQHAFQQVLYGVYHSRRYVPNKVKILLDDVEMQLQAR 291


>gi|325521638|gb|EGD00411.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 308

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 118/289 (40%), Gaps = 5/289 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   +AR  SF  AA +L +S +++S  ++GLE  + ++LF R  R ++LT+ G + 
Sbjct: 8   ELEVVLALARRSSFRGAALELGMSTTAVSSAVAGLEARLTVRLFNRSTRSVSLTDAGRRY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++ +   E    S  PSG LR+         L++     +   YPD++I +
Sbjct: 68  VTRIAPALDEIRSAGEEAGTGSDTPSGTLRVNAPQGAAFLLMEPLFYRYAQRYPDVRIDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +++ IDI  +  D  IRL + +    +       I M   A P YLK    P   ++L
Sbjct: 128 VSESRMIDIVAEGFDAGIRLAESVPQDMIAVPLSRDIRMLVVATPDYLKAHGTPRHPRDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I               L      +       L +N   +I Q  +LG GI  + +
Sbjct: 188 LAHRSIGMRMSHGGIYHWE--LERKGEKLRMDLPVRLALNEMAAIKQAVLLGLGIGFISE 245

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + + D      LV ++         +   Y        +L+A  + +  
Sbjct: 246 WFIDDELKRGALVPVLVPWCPSFGGLRLYYSGHRFVPARLRALIDLVHE 294


>gi|323499613|ref|ZP_08104582.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323315353|gb|EGA68395.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 307

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  + R+ S   A  ++ LS ++++ ++  LE+  GIKL  R  R L+LT+
Sbjct: 1   MDKLADMALFASIVRNQSLAGAGREMGLSPATVTARLQALESRYGIKLLQRTTRHLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   H+   E+   ++ T+  LQ  S +  G L+I+   D+G+  +   + +F   YPD
Sbjct: 61  SGHLYHQACLEILASVQETENLLQTGSKEVRGNLKISAPRDIGKQYIAPLINDFAHKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   L L +   +++    D  IR  + +  SSLI RKL +      A P YL+    P 
Sbjct: 121 VTPYLYLGDNLTNLAESGLDIVIRYGE-LADSSLISRKLASSRRVLCATPEYLRRKGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSG 240
              +L  H+ +    +I    E  NW    D       +   +  +    I Q+ + G+G
Sbjct: 180 CPSDLANHDCLA---MIRSNEELKNWHFEDDAQHNIVTVVPTRYSDDGEVIRQWALCGAG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVI--------TPSFTVYFCYPEALKNTGK 282
           IAL     V+++     LV +++  +             +   Y        +
Sbjct: 237 IALKSWLDVQEDLKHQRLVTVLDGYMKNFNASTSAAGADLNVVYMSRQYQPKR 289


>gi|167033359|ref|YP_001668590.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859847|gb|ABY98254.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 301

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 133/291 (45%), Gaps = 12/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +++F     +  F+ AA +L L+ SS++R +  LET +G  L  R  R ++LTE G++ 
Sbjct: 6   AMKMFVATVDAQGFSAAARRLGLATSSVTRLVDALETALGATLLNRSTRQVSLTEAGARY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     ++  L+     + +   +P G LR+   ++ G+ ++  +L  FL  +P +++ +
Sbjct: 66  YERARGIFEALDEADASVADRGEEPVGVLRLCLPVEFGRRVIAPHLGPFLARHPALELDI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++  D+     D ++RL  P  +  L+ R+L        A+P YL         ++L
Sbjct: 126 DLSDRLDDLLDGRYDLSVRLGDPSPNDELVCRQLGRFQRWLVASPAYLAGREPLQHPRQL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
            +H  + F        +   W     +   E  +S  L+  +   + +  + GSGIALL 
Sbjct: 186 LEHACLRF----RYGQKARPWRLACGQESLELDVSGPLRSANADMLRETALAGSGIALLA 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNF 289
           D++V+ +     L R+  D      T    +   Y    + + ++ AF +F
Sbjct: 242 DWLVRADVLAGRLQRVFPDWQASPGTANNSINALYLPNHRGSRRVNAFIDF 292


>gi|170737222|ref|YP_001778482.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819410|gb|ACA93992.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 313

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 142/297 (47%), Gaps = 11/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDTGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +ET + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQNARAIIESVETAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R++    +   A+P Y++   +P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGNSRVRILASPDYIEAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
             +++LDKH L+ F    P+ +  +  L T       EP +     +S  ++ Q  + G+
Sbjct: 180 RKVEDLDKHTLLGFTQ--PESLNVWPILGTDGEAYRIEPDVY---SSSGETLRQLALEGT 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  L D++   +     LV+++          ++  Y      + ++ +F +++  
Sbjct: 235 GVVCLSDFVTAQDREAGRLVQVLARHTLDVQQPIHAVYYRNTAISSRIASFVDYLIE 291


>gi|218675006|ref|ZP_03524675.1| LysR family transcriptional regulator [Rhizobium etli GR56]
          Length = 276

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/271 (23%), Positives = 127/271 (46%), Gaps = 5/271 (1%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           E+LHL++S++S+ I+ LE  +G++LF R  R  +LT++G   +        ++   + +L
Sbjct: 1   ERLHLTRSAVSKTIARLEQRLGVRLFNRTTRTQSLTDEGRFFYERCLRAIEEIRIGEAQL 60

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +    +  G+LR++  +  G++     L   L  +PD+++     ++ +D+     D A+
Sbjct: 61  ESGRREVRGRLRVSMPVLFGRHCAAPILTRLLDDHPDLELDFSFSDRVVDLLESGFDLAV 120

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R      +  L+ R +    M   A+P YL+    P ++ EL  H  I +          
Sbjct: 121 RNGPLKDNPDLMARAIARQSMTVCASPAYLEKYGVPQTLDELAHHQGIVYRR--GDNDRP 178

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261
           + + A V  P      S L+++   SI    V G G+A L  ++V+D   +  LVR++ D
Sbjct: 179 WIFPAAVGPPREVLPKSRLRLDDLASIADAAVEGRGLAWLTCWLVRDRVLSGELVRVLTD 238

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + +  F  Y  +P +     K++   N +  
Sbjct: 239 MPSTIFEAYAVWPRSPVMLPKVRLAINMLAA 269


>gi|146306542|ref|YP_001187007.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574743|gb|ABP84275.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 312

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 122/310 (39%), Gaps = 26/310 (8%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   A  GSF+ AA +L L+ ++ISR ++ LE+ +G++LF R  R LTLTE G
Sbjct: 3   TLANLESFVRSAECGSFSAAARRLGLTPAAISRNVAQLESNLGVRLFQRSTRRLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +           ++    +L  S+  P+G LR++     G++ L   + EFL  YP + 
Sbjct: 63  ERFLGNVGGGLESIQAAIADLTTSAGAPAGMLRLSAAPAFGRDYLLPLMPEFLARYPAVS 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +   DN+ +++  D  D AI     +    ++ R+L   H+   A+P YL     P   
Sbjct: 123 PEWHFDNRQVELITDGFDAAIGGGIELT-PGVVARELAPAHLVMVASPAYLAGRPAPRQP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--------- 234
            +L + + +         +  +    +            + VN   ++ Q          
Sbjct: 182 GQLAEIDHLGMRSAQSGKVRSWMLQNSKGERAPLELRPRMLVNDPQALCQSALLGLGVAL 241

Query: 235 -----CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                 +               +  L R++ D    +  +   +        K +AF + 
Sbjct: 242 LAVPDVLAHL-----------QSGALQRVLPDWYVDAGPISLYFASQKLLPAKTRAFIDH 290

Query: 290 IFLKARDWKF 299
           +   +R+ K+
Sbjct: 291 LVEYSRNQKW 300


>gi|127513935|ref|YP_001095132.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126639230|gb|ABO24873.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 297

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 16/296 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + +F  +  +G F+  A++L +  +++SR+++ LE+ +  +L  R  R L LTE+G
Sbjct: 8   ELELIHLFVHLVNTGGFSQVAKELGMPVATVSRKVTKLESLLDTQLIMRSTRKLRLTEEG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S+L      V  + +      +    K  G LRIA  + +   +  G L +F   YPDIQ
Sbjct: 68  SELFGRYQNVVAQFD---RCSEPRVEKAEGTLRIAAPVSIISMIFIGVLNDFSKAYPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +  +N  ID+  +  D AI +      SS + + L  +    +A+P YL     P   
Sbjct: 125 LHITQNNSSIDLIDEGVDVAI-VGGAQPDSSWVSKSLGVLDYGLFASPGYLACAGTPQHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L +H+LI       K    FNW               + L +      ++  V   GI
Sbjct: 184 DQLVEHSLI-------KVWPLFNWSMKHVSGEDFYYEGPAKLTLGDLNGAVRATVDDGGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              P+  VK    +  L R++ D       +   Y +      K+K F  F+  +A
Sbjct: 237 LYGPELFVKGELASGELRRVLPDWHGEQRRISLLYHQRTHQPLKVKLFIEFMQDRA 292


>gi|182677173|ref|YP_001831319.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633056|gb|ACB93830.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 298

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 140/296 (47%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  VAR+G+ + AA +L +  +++ R+I GLE  +G K+F R+ RG  +T++
Sbjct: 5   FDWNDLRFFLAVARAGTVSLAARRLGVDHATVIRRIDGLEHALGAKIFERNPRGYNVTQK 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL      +  + +  + EL  S    SG +RI++    G   L   L  F   +P+I
Sbjct: 65  GEKLLASAQMIESEAQKAEQELAGSHQTVSGLVRISSLEGFGNFFLASRLPRFTANHPNI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+   + + +S   AD AI L +P ++   ++ +L    +  Y +  YL N +   +
Sbjct: 125 TLELLNIQQIVALSRREADLAITL-QPPETGRFVRERLTDYMLFVYGSRAYLDNAKPIRT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++   H    + D +      F         +     + +Q +S  + M+    G G+ 
Sbjct: 184 REDFIDHPFSGYIDDL-----VFTRGLDYLHEVKPGLRARIQSSSLHAQMEAACAGFGLC 238

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LP +I    P LV ++   +    + +         + +++A R+FIF +  + +
Sbjct: 239 ILPAFIAAHRPELVPVLPQEVALKRSYWLVADADAAMSSRIRAVRHFIFAEVAEAQ 294


>gi|254249751|ref|ZP_04943071.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124876252|gb|EAY66242.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 313

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 142/297 (47%), Gaps = 11/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDTGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +ET + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQNARAIIESVETAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R++    +   A+P Y++   +P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGNSRVRILASPDYIEAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
             +++LDKH L+ F    P+ +  +  L T       EP +     +S  ++ Q  + G+
Sbjct: 180 RKVEDLDKHTLLGFTQ--PESLNVWPILGTDGEAYRIEPDVY---SSSGETLRQLALEGT 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  L D++   +     LV+++          ++  Y      + ++ +F +++  
Sbjct: 235 GVVCLSDFVTAQDRDAGRLVQVLARHTLDVQQPIHAVYYRNTAISSRIASFVDYLIE 291


>gi|306841813|ref|ZP_07474496.1| LysR family transcriptional regulator [Brucella sp. BO2]
 gi|306288094|gb|EFM59488.1| LysR family transcriptional regulator [Brucella sp. BO2]
          Length = 310

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 121/293 (41%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  SF+ AA++L L+Q ++SRQI+ LE ++G  LF R +R + L+E G   
Sbjct: 14  ALAAFDAVARHESFSAAADELSLTQGAVSRQIASLEEQLGAALFDRTSRNVVLSEPGRVY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        +    +++          L +A     G   L   +  F+  YP I +  
Sbjct: 74  LQAIGPALASIRAASLQVMSQMRGT--TLNLAFLPTFGTRWLIPRIPRFVAQYPHIILNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   +  D AI + +P    +     L+   +    +P +LK+     S  +L
Sbjct: 132 ATRIGQFDFDREGLDAAIHIGQP-DWPNAECTFLMDETVAPVCSPAFLKDHPV-TSPHDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L             F  L      I  P    ++   + ++ Q CV G G+ L+P 
Sbjct: 190 LRLPLFNMASRPGAWEHWFRNLG-----ITTPVPGGMRFEQFSNVSQACVAGLGMGLMPL 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 245 FLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEIRN 297


>gi|217972174|ref|YP_002356925.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217497309|gb|ACK45502.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 315

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 118/286 (41%), Gaps = 7/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ +  SGSFT AA +L  S S +S+QI  LE E+ + L  R  R L LT+ G + 
Sbjct: 8   QMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVLTDAGQQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   +V+   +     + ++    SG +R+ ++   G   +   L+     YP+++ +L
Sbjct: 68  ARYCEQVFEATQNADAMMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKYPELRFEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+  +  D  I   + +     I + L   +    A+P YL     P   +EL
Sbjct: 128 SLFDHKADMLEEGLDLWITNHEQLN-EGYIAQHLAETNFVVVASPDYLLKHGVPHHPREL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +              A  D           +V+   ++    + G GI  +  
Sbjct: 187 AQHNCVIYQSKSRNYDRWS--FAKDDLEQTVHVAGNYRVDLAEAVRNAVIAGRGIGYVAT 244

Query: 247 YIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRN 288
           Y++ D   +  L++++ D        VY  YP       K K    
Sbjct: 245 YLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIE 290


>gi|163845023|ref|YP_001622678.1| hypothetical protein BSUIS_B0899 [Brucella suis ATCC 23445]
 gi|163675746|gb|ABY39856.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 310

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 126/294 (42%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    S+   S    IAT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAMASAQSTS-SFSIATLPTFGTRWLMPRIPDFVEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   +   D      D AI   +P+ + +     L +  +   A+P  LK  R P S 
Sbjct: 129 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHA-TCTFLCSEVIVPVASPSLLKTRR-PASP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+   L+    L  +      W  +     G+          +  ++   + G G AL
Sbjct: 187 EELENEPLLH---LATRPKMWAQWFESCGVE-GQSAYRGHCFEQFSMVIGAALAGLGFAL 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++    +  LV + E  +      Y   PE        + F  +I  + 
Sbjct: 243 LPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEGKLENPLTQVFCQWIAGQV 296


>gi|264678676|ref|YP_003278583.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262209189|gb|ACY33287.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 308

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 127/293 (43%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R +  V   GS + AA  + ++Q ++ R +  LE  +G+ LF R   GL  TE   
Sbjct: 19  WELYRSYLGVLEEGSLSGAARAMGIAQPTVGRHVDALEKALGVTLFTRSQMGLLPTEAAL 78

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      ++      +   +       G +R+  +  +GQ +L   L +    +P + +
Sbjct: 79  ALKPFAQTMHSAAAALRRVAESQGSGIQGTVRVTASEVIGQEVLPPILAQLQDTHPGLTV 138

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L ++  D+    AD A+R+ +P Q   LI R++  + +  +A   YL     P S+ 
Sbjct: 139 ELVLTSRVQDLLQREADIAVRMTQPRQ-EQLIARRIGVMPLGLHAHKRYLDKHGTPASLA 197

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H LI F +  P     F   A    PI       ++ ++ ++ M     G GI + 
Sbjct: 198 DLAQHALIGFDEEAP-----FVRAARKAFPIWSRENFAVRTDNDMAQMALIRAGCGIGVC 252

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              +   +PNLV I+   I  S   +    E L+N    K   + +    +D+
Sbjct: 253 QVNLAARDPNLVNILPGSIPLSLETWLTMHEDLRNNPSCKVTFDALLKGLQDY 305


>gi|307292725|ref|ZP_07572571.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306880791|gb|EFN12007.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 307

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 127/294 (43%), Gaps = 14/294 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D+D   +F  +   G    A  +L++S + +S+++  LE  +G +L +R  R L LT
Sbjct: 2   MDPDYD---LFATIVDEGGMAAAGRRLNISPAMVSKRLVRLEERLGTRLIHRTTRRLALT 58

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +LH     +   L+  +  +  +S + +G LR+      G+  +  +L  FL  +P
Sbjct: 59  PAGERLHEDLRGILAALDEAERRVSGASAEAAGTLRVTAPTSFGRMHVAPHLARFLEAHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++Q+ L +   D+    AD AIR+        L   +L T      AAP YL     P
Sbjct: 119 KVRLQIDLSDDYADLLATRADLAIRITTD-PGPGLAAHRLATNRRVLCAAPAYLDRFGTP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I  L +H L+     +P  +        V+        S ++ NS   + +  + G G
Sbjct: 178 HGISGLKRHRLLAAEGQLPWRLIGPRGAVMVEGS------SHVRTNSSEMVRELALSGVG 231

Query: 241 IALLPDYIVKD---NPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IAL   + V D   + ++ +IM D   +    +Y  +         + +F +F+
Sbjct: 232 IALRSLWDVSDALESGDIRQIMPDHEGSADVGLYAVHLPQNVPPLAISSFIDFL 285


>gi|119472356|ref|ZP_01614495.1| transcriptional regulator [Alteromonadales bacterium TW-7]
 gi|119444979|gb|EAW26276.1| transcriptional regulator [Alteromonadales bacterium TW-7]
          Length = 299

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            ++ ++ F  VA   S + AA Q   + +++S  I  LE ++G  LF R  R L L+  G
Sbjct: 3   SFNDIQTFIDVASCASISEAARQNAQTPAAVSAAIKRLEKDLGNVLFIRSTRSLRLSVAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +      +    ++     +Q +  + +G L+++   DLG+N L   L EFL  YP ++
Sbjct: 63  EQFLSYAKDSLSLIQQGVAAVQTAVGEVTGTLQVSAPCDLGRNKLSEWLNEFLAQYPHVK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLS 182
           ++L L ++  DI     D A+R   P + S LI   L         A+P Y+        
Sbjct: 123 LKLHLSDEVSDIYSQSIDIALRFGVP-KDSQLIAAPLFLNNARILVASPEYVAKTGLLTH 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGI 241
              L +H  ITF        E   W    +  + + +++C   VN    + ++ + G GI
Sbjct: 182 PLNLTQHTTITFMRFGEVFKE---WRFYKNGAVQKVQLNCQHIVNDGEMVRRWALEGKGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A      V D+     LV +  +  +    +Y  Y +  + T  + AFR FI  K
Sbjct: 239 AYKSYLDVIDDLASGELVHLCPEWQSDPLPLYMMYADRRQMTPVISAFRAFIQQK 293


>gi|187923083|ref|YP_001894725.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714277|gb|ACD15501.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 305

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 125/294 (42%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF      GSF  AA +  LS +   + +S +E E+  +L  R  R L+LT+
Sbjct: 1   MDRLTSLGVFVAAVEEGSFAAAARRFGLSAAMAGKHVSAIEAELNARLLQRTTRRLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +    +    E  +S     G LR+A  +  G   L   +  +L  +P 
Sbjct: 61  AGQTYYERCKRILEAFDEANREAGDSQGTAHGVLRVAAPVTFGAMHLGEVVARYLEDHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++L ++ +D+     D AIR+ + +    L+ R+L    M   A+P YL+    P 
Sbjct: 121 VNVEVLLGDRYVDLMDAGVDVAIRIGR-LTDPRLVMRRLAPCRMVVCASPAYLERHGAPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L     +TF + +     D+  L   +R         L  N+   ++   + G+GI
Sbjct: 180 KPEDLRLAQRLTFSEAVSAG--DWTLLDARNRAHVIDGPCRLTANNTQMLLAAALAGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A  P ++  ++     LV ++         +   YP A +   K++ F +++  
Sbjct: 238 AYGPTFVFGEHLRRGELVALLPAYRAADLAIQAVYPSAQRIPLKVRRFVDYLAE 291


>gi|17546191|ref|NP_519593.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428487|emb|CAD15174.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 318

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+    F  VA  GSFT AA++L L +SS+S  +S LE ++G +LF R  R L LT+ G
Sbjct: 5   DWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGARLFERSTRRLRLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L R    ++ +L     +   +   P+G LRIA   +         + E +  +  ++
Sbjct: 65  EALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAARQFAEVVLEVMREHAGLR 124

Query: 124 IQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I++ +  + +D      D  + + R+P+  S L+ +++  +      AP  L        
Sbjct: 125 IEVDVAPRQVDPLSQGYDIMLTVPREPLPDSGLVAQRVFDLRRAVVVAPALLDRLGPLNH 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +           ++ + A     +  P    ++ ++    +Q  V G G+A
Sbjct: 185 PNQLIDWPCLGLSSES-----EWQFRAPGGETLNLPLDFRMRTSNSELRLQAAVAGLGVA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +     ++      L  ++    +P   VY  +P       K+K F + +  +
Sbjct: 240 RITSAFAEELIAAGALREVLAGFRSPPMRVYAVFPGRRLMPAKVKVFMDALHRR 293


>gi|87123234|ref|ZP_01079085.1| transcriptional regulator, LysR family protein [Synechococcus sp.
           RS9917]
 gi|86168954|gb|EAQ70210.1| transcriptional regulator, LysR family protein [Synechococcus sp.
           RS9917]
          Length = 315

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 136/297 (45%), Gaps = 10/297 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F +V + G  + A     + +S +SR+I+ LE  +G++L  R  R +TLT  G ++
Sbjct: 9   DLHDFVLVVQHGGLSAAERATGIDKSRLSRRITRLEQALGVQLLRRTPRHVTLTTAGERV 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    E     E    EL E + +PSG++R++  + + Q  L   L  FL  YP IQ+++
Sbjct: 69  YAHCREGLLCFERAIEELNELAAEPSGRVRLSCPVQITQTYLTRLLPAFLQAYPRIQVEV 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSS-LIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              ++ +D+S D  D A+R+R  ++ S  L+ R L+ +     A+P  ++        + 
Sbjct: 129 EASDRIVDLSRDPIDLALRVRPELEDSRHLVARPLLPVRNWLVASPVLMEARGAIEDPEA 188

Query: 186 LDKHNLITFGDLIPKCMEDF--NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L     + +   + +    +     A ++R   +PR   L VN+    ++    G GI L
Sbjct: 189 LADWPSVAWPSAVSEAGPIWALRRHAQIERFSHQPR---LLVNNLDVQLRAVETGIGIGL 245

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LP+ IV    +   L R++ D        ++  +P +   +   +   +++     D
Sbjct: 246 LPNVIVTNAIEAGRLARVLPDWEGECEELIHLIFPRSRHPSPATRELISYLCAHLPD 302


>gi|296536969|ref|ZP_06898985.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296262702|gb|EFH09311.1| LysR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 297

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 123/294 (41%), Gaps = 5/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D+L +F ++AR G F  AA +  +S S +S+ ++ LE  +G++L  R  R +  TE G 
Sbjct: 6   LDQLEIFALIARRGGFRAAAAERGVSSSLMSQTMASLEQALGLRLLNRTTRSVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R       ++     EL +   +PSG LRI       +++L      F+  +P +Q+
Sbjct: 66  RLLRRLGPALDEIRLALAELDQLREQPSGTLRINAPAPAAEHILCPLAFAFMAAHPGVQV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++ D   IDI     D  +R  + ++   +       +     AAP YL+    P S  
Sbjct: 126 EIVSDAAIIDIVAQGFDAGVRFGRQLEQDMVAMPLGPPLRYAIVAAPEYLRRRGVPRSPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ I      P               +       L ++S    +Q  + G GIA +
Sbjct: 186 DLMAHDGI--RRRYPGGSLARWRFEKAGEAVELTPPGRLTLSSAHQELQAALAGQGIAHV 243

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +   +       LV I+ D        +  YP     +  ++AF +F+   AR
Sbjct: 244 FEDYARPALAEGRLVEILADWSPTLPGWFLYYPNRRHGSAAMRAFLDFVRRSAR 297


>gi|254562813|ref|YP_003069908.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254270091|emb|CAX26078.1| putative transcriptional regulator, lysR family protein
           [Methylobacterium extorquens DM4]
          Length = 301

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 134/293 (45%), Gaps = 11/293 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +GSFT  A  L  + S+IS+ I+ LE  + ++LF+R  R L LTE+G   +
Sbjct: 7   LGAFVRAVEAGSFTAGARLLETTPSAISKSIARLERRLKVRLFHRSTRSLALTEEGQAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + + H +E     + E +   +G++++    +LG+ LL+   + FL  +P ++++  
Sbjct: 67  DRIAPLVHAIEDASGMIGEQAS--NGRIKVTMPAELGRALLEPITRVFLPCHPRMRLEAN 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D AIR   P   + L  R L T+ +   AAP YL     P ++ +L 
Sbjct: 125 LSDRRVDLIHEGYDVAIRAGTP-PDTELTARLLGTLELVLVAAPAYLDRVGTPNTLADLQ 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA-LLPD 246
           +H    +            W  +V  P G     C   +   ++    V G GI  +L  
Sbjct: 184 RHTHARYRLGGLPYPVRSAWGPSVALPPG-----CFDADDGEALRIAAVSGLGITQILHR 238

Query: 247 YIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            +  D  +  L R++ DV   +  VY  +  A     +L+ F +F+    R W
Sbjct: 239 SVSHDLASGRLRRVLSDVPLATVPVYALHAYARLAPERLRIFLDFVADTLRAW 291


>gi|37527791|ref|NP_931136.1| hypothetical protein plu3936 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787227|emb|CAE16308.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 297

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 128/292 (43%), Gaps = 9/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  VARS SF+  A    ++ SSI+RQI  LE  +  KLF+R  RGL+LT+ G  
Sbjct: 8   DMLTTFIHVARSRSFSAVARLQGMAASSITRQIDNLEQVLETKLFFRSTRGLSLTDAGEI 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      + + L   Q EL   + +P G LR+A     G+  +   L E    YP I+I+
Sbjct: 68  LFARAQGIINDLVDIQAELAALNGEPQGVLRVACLPTFGRQHIIPMLAELFTRYPKIRIE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L    +  D   D  D  IR+ + ++ S+L  +++ T      A+P Y++    P ++ E
Sbjct: 128 LDQTERLTDPVRDRLDVVIRIGE-LKDSTLYSKRIATQTWIICASPGYIQRHGTPTTLTE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           LD+H L+              W                + + + ++    V G GIALLP
Sbjct: 187 LDEHYLL----DKHHDPAGICWSRYRSVINFSDNNRIFRSDDFETLRMATVSGFGIALLP 242

Query: 246 DYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +++V  +     L+ + +D       +Y           KL  F + +  + 
Sbjct: 243 NWVVSTDIRSEKLIPLFDDPDGRKEDIYLL-RALAHPPAKLTVFMSLLQKRL 293


>gi|330830782|ref|YP_004393734.1| carbapenem-hydrolyzing beta-lactamase transcriptional activator
           [Aeromonas veronii B565]
 gi|328805918|gb|AEB51117.1| Carbapenem-hydrolyzing beta-lactamase transcriptional activator
           [Aeromonas veronii B565]
          Length = 306

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 120/291 (41%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AAE+L ++Q++IS QI  LE  +GIKLF R  R L LTE+G 
Sbjct: 8   LNALKAFEAAARHLSFTRAAEELFVTQAAISHQIKALEEYLGIKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  +     +L   S    G L ++         L   L +F   +PDI +
Sbjct: 68  GYFLDIKDIFASISEATDKLLARSA--KGALTVSLQPSFAIQWLVPRLVKFSERHPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL T ++    +P  L   +   + Q
Sbjct: 126 RIKAVDLDEGSLTDDVDVAIYYGRG-NWPGLRSDKLHTEYLIPVCSPLLLTGPKPLRTPQ 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W   +D          +  +    ++Q  + G G+AL 
Sbjct: 185 DLTLHTLLH----DTSRRDWKAWFRQLDIDAPNVNQGPI-FSHSTMVIQAAIHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + +   +   L+   E V+      Y    E   + GK+ AFR+++  
Sbjct: 240 HSVLAQPEIEAGRLICPFEQVLVSKNAFYLVCQEQQSDQGKIVAFRDWMLE 290


>gi|320664046|gb|EFX31233.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. LSU-61]
          Length = 299

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           I+D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 IIDYGLTDVVSERFDAGVRLGGEMGKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|254422062|ref|ZP_05035780.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335]
 gi|196189551|gb|EDX84515.1| LysR substrate binding domain protein [Synechococcus sp. PCC 7335]
          Length = 312

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 131/294 (44%), Gaps = 10/294 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS   D+L   + F  +A +GS + AA  L LSQ S+SRQ++ LE+    +L  R    L
Sbjct: 1   MSKSLDRLTLLQTFVRIADAGSISAAARDLGLSQPSVSRQLAELESRFQTQLMRRTTHSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LTE G++L   + ++ +  E  + +  E+     G L++   + LGQ  L      F  
Sbjct: 61  SLTEAGAELLADSRQLLNDWEALEEKHIETGEMLRGGLKVVAPVALGQLHLIDIALRFQQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P I +   L++ +I  S    DC I++  PIQ +SL    L  +      AP  + + 
Sbjct: 121 QHPLISLSWQLEDGNIRFSEVGCDCWIKIG-PIQDNSLQVEPLGEVERLVVGAPEAITHF 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               + + + K   I         +   N L    + I       +  N+  ++ +  + 
Sbjct: 180 GSLETPRAVAKFPFIALSPFEGGQIPLTNLL---GKTISIAPPVRMSTNNIFALRRATLA 236

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G G++++P ++++   ++  L+ ++ +   P  T++  Y        +L+ F  
Sbjct: 237 GLGLSVMPRWLIQTELESGQLIDLLPEWRAPKLTIHLAYLPRRHQLRRLRGFIE 290


>gi|325918615|ref|ZP_08180722.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325535179|gb|EGD07068.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 304

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 119/298 (39%), Gaps = 11/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F   AR  SF+ AA++L+++ +++ + +  LE  +G  LF R   G   +  TE
Sbjct: 7   LNALRAFEASARHQSFSAAADELNVTPAAVGQLVRTLEDWLGAPLFVRSPGGRVRIEPTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + +L       +      SG L +  +       L   L  F    P+
Sbjct: 67  TAERALPDIRAGFDRL--ALGMERLRDGSTSGVLTVTVSPAFAAKWLLPRLDHFHAACPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L  ++K +D      D  +R         L   KL+   ++   +P  L+  R   
Sbjct: 125 TSVRLDTNHKSVDFVAQRIDIGVRYGTG-SWPGLKADKLMDEEVYPVCSPELLREHRHLR 183

Query: 182 SIQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L +  LI             +         +  P    LQ+N+  +++Q  + G G
Sbjct: 184 KPSDLVRETLIHDLSMDGHSGFPTWQTWMDAAGVLDAPHTRSLQINNSAAVLQTAIEGHG 243

Query: 241 IALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +AL    + +D+     LVR+  ++ +  S   +  Y +   +  +L AFRN++  +A
Sbjct: 244 VALARSVMARDDLASGRLVRLFPNISLASSLAYFVVYRQECADLPRLAAFRNWLLSEA 301


>gi|86360547|ref|YP_472435.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284649|gb|ABC93708.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 317

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 135/301 (44%), Gaps = 10/301 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT 
Sbjct: 6   QFTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTA 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++      ++  + E  + +L + S+   G +R++             L  F   +P 
Sbjct: 66  MGTRFVDTAEKMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLPRFAAQHPH 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+   + + +S   AD ++ L +P +       KL   H+  Y +  YL       
Sbjct: 126 LSLELVTIQQIMSLSRKEADLSVVLDEPKEGP-YFAEKLTDYHLQIYGSRDYLAKAPAIT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L +H  +++ + +       ++L+ V      PRI    Q +S  + +     G G
Sbjct: 185 CRDDLLEHPFVSYIEEMIFA-PGLDYLSDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--DWK 298
           + +LP +     P LVR++ + I      +      LK   +++A  +F+    R  D +
Sbjct: 239 LCILPYFFASRYPELVRVLPEEIDLKRHYWITCHRDLKQAPRVRAVIDFLREAVRGDDAR 298

Query: 299 F 299
           F
Sbjct: 299 F 299


>gi|123444207|ref|YP_001008390.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122091168|emb|CAL14051.1| Putative transcriptional regulator of the LysR family [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 317

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 134/294 (45%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F  +  +GS + AA +L  SQ +ISR++  LE  +G+KL  R    + LT+ G 
Sbjct: 12  IELMQTFIRIIEAGSLSAAAARLGTSQPTISRRLQTLERLLGLKLLQRTTHIMKLTDDGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++     T + +L+ ++ +P G LR+      GQ+ L   LK+FL  YP + +
Sbjct: 72  RCYSHAKQLIESWNTMEDDLRGATDEPRGLLRVLVPHAFGQDQLIKPLKDFLHQYPKMSV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L+++  D   +  DCAI++   +   S++   L  +     AAP  L N   P   +
Sbjct: 132 EWMLNDRRPDFIAEGIDCAIQVGS-VTDPSVVAILLAEVPRIVVAAPELLDNQPLPTHPE 190

Query: 185 ELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L   + +        + +        + R   +P+   L  +S  ++    + G G  +
Sbjct: 191 QLQDFHWLALNTFYRNEVVLSHKTNGEMHRFSIQPQ---LSTDSLYALRNAALTGLGAGI 247

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              ++V D+     LV +  D       +Y  YP A     +L+AF + I  +A
Sbjct: 248 ASTWVVNDDIKQGRLVHLTPDWHGLPLPIYLVYPHASYYPARLRAFLD-IMRQA 300


>gi|121596029|ref|YP_987925.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120608109|gb|ABM43849.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 312

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 135/297 (45%), Gaps = 10/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  SG+ + AA +L ++++++S  ++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVEIVDSGNLSQAARKLKMTRANVSYHLAQLEKSLGVQLVKRTTRRVEPTEL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     V ++L   Q  +     +  G++ I+     GQ ++   L EF  LYP I
Sbjct: 61  GLRLYEHGRNVRNELAAAQETITSLGQELRGRVGISVPSGYGQMVMSDWLIEFKQLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  ++  D  D AIR+ +     S++ R L  +   A A+  Y      P +
Sbjct: 121 VLDVLFENRADNL-RDEVDIAIRVIQE-PPLSVVARSLGDVRYVACASLDYAARHGLPRT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL    +IT G +  +              + EP    L    +  + Q  + G G+ 
Sbjct: 179 LLELRNAPVITAGVMGRQLRLAAYQGLERQEVMLEP---TLISEHFPFLRQGVLAGLGVG 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++PDY+V+D   +  ++  ++D     F   +Y  Y      T  ++   +F+  KA
Sbjct: 236 VVPDYVVQDKIASGEVLTTLQDYRLSIFGTHMYLLYMPNRHQTRAVRTCIDFLLAKA 292


>gi|15600853|ref|NP_232483.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121590638|ref|ZP_01677973.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|153212872|ref|ZP_01948489.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|153801237|ref|ZP_01955823.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|153819229|ref|ZP_01971896.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153823631|ref|ZP_01976298.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|153825761|ref|ZP_01978428.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|153829005|ref|ZP_01981672.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|227811708|ref|YP_002811718.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229510460|ref|ZP_04399940.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229517409|ref|ZP_04406854.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229522754|ref|ZP_04412170.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
 gi|229527933|ref|ZP_04417324.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229605219|ref|YP_002875923.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254284806|ref|ZP_04959773.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|254850346|ref|ZP_05239696.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746094|ref|ZP_05420041.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|298499945|ref|ZP_07009751.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9657467|gb|AAF95996.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121547531|gb|EAX57636.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|124116250|gb|EAY35070.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|124123255|gb|EAY41998.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|126510221|gb|EAZ72815.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126518851|gb|EAZ76074.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|148875536|gb|EDL73671.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|149740600|gb|EDM54711.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|150425591|gb|EDN17367.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|227010850|gb|ACP07061.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229334295|gb|EEN99780.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229340739|gb|EEO05745.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
 gi|229345445|gb|EEO10418.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229352905|gb|EEO17845.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229371705|gb|ACQ62127.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254846051|gb|EET24465.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255735848|gb|EET91246.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|297541926|gb|EFH77977.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|327485313|gb|AEA79719.1| Transcriptional regulator, LysR family [Vibrio cholerae LMA3894-4]
          Length = 295

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I++QLI       +   + D  I R  + + S S     L       YA+P YL     P
Sbjct: 121 IRVQLITT-TPGQLPELHLDLFISREIEQLNSLSFKATPLFEYQAAFYASPSYLAKHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++QEL +HN++ +G+      + F  + T                +  ++      G G
Sbjct: 180 QTLQELTEHNVLCWGE------QTFREVKTAQGKRLT-LTGNFATTNPEALFYAGKAGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I +    ++K+     NLVR++ DV     TVY  YP+      + + F + +  K 
Sbjct: 233 IIVTGHIMIKEELKQGNLVRLLPDVTIDQATVYAYYPKLEYQHTRTQLFLDHLKQKL 289


>gi|330820843|ref|YP_004349705.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327372838|gb|AEA64193.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 307

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 124/299 (41%), Gaps = 7/299 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++ +F  V R+GSF  AA +L +  ++ISR I  LE+++   L  R  R LTLT  
Sbjct: 2   IDLNEIYLFVEVIRAGSFAEAARRLGMPANTISRHIQALESKMKSPLILRTTRKLTLTAV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   ++    +     E+ +    P G LR+A   D         + EFL  YP +
Sbjct: 62  GQSFYDQCAQNVADIVQASQEVSDIHAAPGGSLRVALPGDFFHVFPVAWITEFLSAYPSV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++ + D+   D+     D A R    ++ ++ ++R + +      AAP YL     P +
Sbjct: 122 NLEFLTDDARADLVAHAVDVAFRPVFALEDNT-VRRVISSAQRRLVAAPVYLAAHGIPRA 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +H+ +         +     L+                +S   I +  + G GIA
Sbjct: 181 PDELSRHDCLLLSRTPGLEVWH---LSGPQGNARVEVSGRFLSSSIELIRKTAIEGLGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LLP+  ++   D   LV +++D    +      +P           F ++I  K R  +
Sbjct: 238 LLPEVCMQADIDAGRLVPVLDDYRATNAQFCAVFPSHRYIRRVTTLFVDYIQDKIRSAR 296


>gi|262172092|ref|ZP_06039770.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           mimicus MB-451]
 gi|261893168|gb|EEY39154.1| glycine cleavage system transcriptional activator GcvA [Vibrio
           mimicus MB-451]
          Length = 297

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 120/288 (41%), Gaps = 11/288 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G       
Sbjct: 2   FEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQSYFLDI 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            +++  L     +L E S    G L I+         L   L +F    PDI +++   +
Sbjct: 62  KDIFSSLAEATDKLLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDVRIKAVD 119

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
            D     D  D AI   +      L   KL    +    +P  L   +   ++++L  H 
Sbjct: 120 MDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPALLLGNKPMETLRDLSFHT 178

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           L+          +D+   A  +             +    ++Q    G G+AL  + + +
Sbjct: 179 LLH-----DTSRKDWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALGNNVLAQ 233

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 234 PEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 281


>gi|73538553|ref|YP_298920.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72121890|gb|AAZ64076.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 299

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 125/304 (41%), Gaps = 22/304 (7%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V  +G FT AA +L +S S +SR I+ LE  +G++L  R  R +  TE
Sbjct: 1   MDRLQAMKTFVTVVETGGFTAAARKLDVSLSVVSRVITELEAHLGVRLLTRTTRLVRPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  ++E  ++ +  +   P G+L +  ++  G   +   + E+L  YP+
Sbjct: 61  TGTAYFENCRRLLAEIEEAELSVTGTHAAPRGQLSVTASVLFGSRYVTPIVVEYLRRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +  +L ++ ++   +  D  +R+ + + SSSL    +  +     A+P YL     P 
Sbjct: 121 VGVSCLLLDRVVNFVDEGIDVGVRIGE-LPSSSLQAVPVGRVRRVVCASPDYLARHGVPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLS----------I 231
           +  +L  H LI    +       F+           PR++    +S ++          +
Sbjct: 180 TPDDLAHHTLIQTTGISTLPEWRFHHNDQPVFTRIAPRMATTTNDSAIAAAVAGFGVARV 239

Query: 232 MQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + Y + G             +  L  ++ D       ++  + E      K++AF +   
Sbjct: 240 LSYQIAGE----------LRDGRLQTVLADYEPAPLPIHVIHREGRHAVQKVRAFLDLAI 289

Query: 292 LKAR 295
            + R
Sbjct: 290 ERLR 293


>gi|256111989|ref|ZP_05452940.1| transcriptional regulator, LysR family protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|265993440|ref|ZP_06105997.1| LysR family transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|262764310|gb|EEZ10342.1| LysR family transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
          Length = 261

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 127/264 (48%), Gaps = 7/264 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA ++  S++ +S+ +  LE E+G +L  R  R  +LTE
Sbjct: 1   MDTLIRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    E+  +++  Q  + E+S    G+++++        ++  +L +F L +P+
Sbjct: 61  AGHTYYHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + LD++ +D+  +  D AIR+ + +Q SSLI ++L   H     AP  +    +P 
Sbjct: 121 IVLDVRLDDRFVDLVEEGFDLAIRITR-LQDSSLIAKRLSPFHSVLCGAPELIARVGKPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L     I   D   +   ++++       +  P    +++NS ++     + G G 
Sbjct: 180 RPEDLTDRPCIV--DTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGF 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDV 262
            +LP +I +D      L+  +++ 
Sbjct: 238 CMLPAFIAEDEIEQGKLITCLDEF 261


>gi|170691921|ref|ZP_02883085.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143205|gb|EDT11369.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 350

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 120/291 (41%), Gaps = 8/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + L+VF  VAR  SFT AA +L+++Q+++S QI  LE E+GI+LF+R    L LT  G
Sbjct: 33  SLNGLKVFERVARHMSFTKAAAELNVTQTAVSHQIRRLEDELGIRLFHRFKERLELTASG 92

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +  S  + +L  +  +L E S K    L I+T        L   L  F L +PDI 
Sbjct: 93  QVYLQGVSLAFEQLRFSTEQLLEGSNKS--TLTISTLATFASKWLLPRLGSFRLKHPDID 150

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L      I      AD AIR     +   L   +L+   +    +P  L       S+
Sbjct: 151 IRLSASTDLIHFVAGGADAAIRYGSG-EWKGLRVDRLMDDEIFPVCSPKLLTGSHPLTSV 209

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H L+    +         WL     P      + L  +  L  +Q  V G G+ +
Sbjct: 210 DNLAHHTLLQVSGVTSNDWSI--WLDAAKLPTNLRGGARLTFDLALMAVQAAVEGHGVCI 267

Query: 244 LPDYIVKDNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                V+D+    R++      +      Y   P  L N  K+ A R ++ 
Sbjct: 268 GRRAYVEDDLRAGRLIAPFGKSVITDRAFYLVSPHDLANCAKVVALRTWLM 318


>gi|162455244|ref|YP_001617610.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161165826|emb|CAN97131.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 312

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 132/298 (44%), Gaps = 8/298 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D  D +RVF  VA    F  AA +L +S  +++R IS LE  +G +L +R  R + LT
Sbjct: 12  PMDRLDAMRVFVAVAEEEGFAPAARRLSMSPPAVTRAISALEERIGTRLLHRTTRVVRLT 71

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++       +  ++E  +     S     G++ +   +  G+  +   L +FL L+P
Sbjct: 72  EAGARYLADCKRILGEIEEAEASAAGSHTALRGQIGVTAPVLFGRMFVAPALFDFLALHP 131

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +    +L ++ +D+  +  D A+R+   +  SSL   ++ ++     A+  YL    EP
Sbjct: 132 RVSAWTLLVDRVVDMVDEGLDVAVRIAH-LPDSSLSAIRVGSVRRVVCASAEYLAARGEP 190

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +H+ I F          F   + V+R       S L  N+    +   V G G
Sbjct: 191 EAPADLARHDTIAFSWTGSPVEWSFGSGSRVER---VSPSSQLLANTADVAIAAAVAGRG 247

Query: 241 IALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A +  Y +       R   ++     P   ++  +PE  +   +++AF +F+  + R
Sbjct: 248 LARVLSYQIDPELRAGRLSIVLAAHEPPPVPIHVVHPEGRRAAVRVRAFVDFLVDRLR 305


>gi|325276280|ref|ZP_08142069.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324098584|gb|EGB96641.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 300

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 121/293 (41%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A  QL + +S +SR+I+ LE  +G +L  R  R L LT  G
Sbjct: 3   DLNDLFYFARVVEAGGFAAAGRQLGIPKSRLSRRIAELEERLGTRLLQRTTRQLKLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  + E     +   S +P G+LR++  + L    L   +  FL  YP +Q
Sbjct: 63  ERYLHHCQAMLLEAEAADETVASMSSEPRGRLRVSCPVALAHAFLPQVISRFLEQYPLVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++L N+ +D+  +  D A+R+R    +  +L+ R+L    M   AAP +  + R+P  
Sbjct: 123 LDMVLLNRRVDLISEGIDVALRVRDLGDEDPALVTRRLRQAQMQLVAAPGFADHIRDPAE 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L        G      +  F  L    +         L ++ ++        G G  
Sbjct: 183 LATLP-----VLGAAEADRLVHFRLLGPNGKQQDLALEPRLAIDDFVVRNAAVRAGLGFT 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP    +   +   LVR++ +   P   +   YP        ++ + + +  
Sbjct: 238 ALPSMFCEAELERGELVRLLPEWSLPGGYLQAVYPHRRGLLPAVRVWIDHLAA 290


>gi|258543127|ref|YP_003188560.1| LysR family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634205|dbj|BAI00181.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637265|dbj|BAI03234.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640317|dbj|BAI06279.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643374|dbj|BAI09329.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646429|dbj|BAI12377.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649482|dbj|BAI15423.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652468|dbj|BAI18402.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655526|dbj|BAI21453.1| transcriptional regulator LysR [Acetobacter pasteurianus IFO
           3283-12]
          Length = 315

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 131/301 (43%), Gaps = 12/301 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V + G F+ AA    L +S +SR+I  LE  +  +L  R +R  ++TE G
Sbjct: 10  DLNDFGYFVQVVKYGGFSAAARATGLQKSLLSRRIRLLEERLHARLIQRSSRHFSVTETG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +  + +T +  + +   +P G +R++  + L        L  F++LYP + 
Sbjct: 70  HRFYEHCIAMLEEADTAERSVAQLQTEPCGLVRLSCPVALLNFQFGALLARFIMLYPAVT 129

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL- 181
           +QL   N+ +D+  +  D AIR+R  PI +S L+ R L T      AAP  +     PL 
Sbjct: 130 LQLESTNRRVDVLKEGMDLAIRVRFPPIAASDLVMRTLDTSTQCLIAAPTLV---PHPLA 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           S  +L+    + F            N          EPR   L  +    + +  ++G+G
Sbjct: 187 SPADLNAFPSLDFHTTPGSHSWLLENQEGQTATIFHEPR---LATDDMAVLREAALVGAG 243

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  +P  +V  +     LVRI+      +  ++  +P        ++A  +F+  + R  
Sbjct: 244 IVQMPTMMVWQDIEAGRLVRILPGWHPQAGIIHAVFPSRRGLVPAVRALLDFLAQECRAQ 303

Query: 298 K 298
           +
Sbjct: 304 R 304


>gi|91778103|ref|YP_553311.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690763|gb|ABE33961.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 301

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 127/299 (42%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   +R    +  SGS   AA +L LS S++++++  LE ++G +L  R AR L  T
Sbjct: 1   MN-DSADIRFLLTLRESGSLIAAARKLGLSPSAVTQRLQQLERKLGAQLVNRTARRLQFT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+ L    +E+  + +    +LQ       G L+I   +  G+  L   +  F    P
Sbjct: 60  EEGTLLCERGAELVQQFDALFEDLQMRRGGLVGTLKINAPLGFGRRHLAPAIAAFQQQNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI I L L ++ +  + D  D  + + + +  S+L+   +        AAP  ++    P
Sbjct: 120 DIDIALTLSDRPLTETTDRFDIVVHIGE-LPVSNLVGYTIAPNARFVCAAPALIRRTGVP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            S  EL K   I   +      +   W  +  R     R+S  L  N    I Q+   G 
Sbjct: 179 GSPDELSKLPCIVLRE---NNEDVSLWQFSKGRTRRSVRVSAHLSCNDGDVIRQWACEGR 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ L  ++ V D+     L+R++ +   P+  V     +      + + F  ++    R
Sbjct: 236 GVILRSEWDVADDLAKGKLIRLLPEWRAPAADVIALTHQRTGLPARTRHFMQYLQSSFR 294


>gi|188533870|ref|YP_001907667.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188028912|emb|CAO96778.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 299

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L    +VAR  SFT AA +L +SQS++S  I  LE  + ++L  R  R ++ TE G
Sbjct: 5   NFNDLISLMMVARERSFTRAAARLGVSQSALSHSIRALEERLALRLLTRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    ++E+  + + E   K +G +R+       +  L   L  FL  YPD+ 
Sbjct: 65  ERLINAIAPRLEEIESQLVAMSEMREKTAGNIRLNAGHHAVKTTLWPALHPFLKQYPDVN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  +RL + +    +  R      M    +P Y  +   P S 
Sbjct: 125 VEITVDNTLTDIVSGRYDAGVRLGEQVAKDMVAVRIGPDWSMAVVGSPDYFSSHGRPQSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           Q+L  H+ I     +P   + + W    +      R+   L  NS    ++  + G G+A
Sbjct: 185 QDLQHHSCINL--RLPTMGDLYAWEFKKEGREIRVRVEGQLIFNSLEPRIEAAIGGLGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V    +N  L R++ D   P    Y  YP   ++T         +
Sbjct: 243 FVPEDAVNAHLENGRLERVLTDWSEPFTGYYLYYPSRKQHTLAFARLIEAL 293


>gi|160874119|ref|YP_001553435.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160859641|gb|ABX48175.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315266351|gb|ADT93204.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 315

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 7/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ +  SGSFT AA +L  S S +S+QI  LE E+ + L  R  R L LT+ G + 
Sbjct: 8   QMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVLTDAGQQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +V+   +     + ++    SG +R+ ++   G   +   L+     YP+++ +L
Sbjct: 68  AHYCEQVFEATQNADAIMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKYPELRFEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+  +  D  I   + +     I + L   +    A+P YL     P   +EL
Sbjct: 128 SLFDHKADMLEEGLDLWITNHEQLN-EGYIAQHLAETNFVVVASPDYLLKHGVPHHPREL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +              A  D           +V+   ++    + G GI  +  
Sbjct: 187 AQHNCVIYQSKSRNYDRWS--FAKDDHEQTVNVAGNYRVDLAEAVRNAVIAGRGIGYVAT 244

Query: 247 YIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRN 288
           Y++ D   +  L++++ D        VY  YP       K K    
Sbjct: 245 YLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIE 290


>gi|254511331|ref|ZP_05123398.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221535042|gb|EEE38030.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 292

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AA+ L +  +++ R I  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       ++      SG L + +   L   L+   L EF   +P + 
Sbjct: 63  EDLLRVAQATEDQFNQLVGRMKGRGDDVSGDLVVTSLASLAP-LVVPTLTEFQQAHPGLI 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +  ++   +    A  AIR          + +  +   +  +A+  Y++    P  +
Sbjct: 122 VRYLTGDRLFRLEYGEAHVAIRAGAAPDQPDNVVQPFIPQEIGLFASKAYIERHGRPSGL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +   H+ +   D   +      WL    R     R    +  +   + +  + G+GI  
Sbjct: 182 ADFADHHFVGNDDENSRAPFS-RWL----RANAPERAITFRCTNNFCMREAVLAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  +    +P+LV +ME +   S  ++      L  T K++AF +F+  +++ W
Sbjct: 237 MARWEAARDPDLVEVMEPLPEWSGKLWLVTHVDLHRTTKVQAFLSFLKGQSKGW 290


>gi|91226411|ref|ZP_01261210.1| substrate-binding transcriptional regulator, LysR family protein
           [Vibrio alginolyticus 12G01]
 gi|91189225|gb|EAS75505.1| substrate-binding transcriptional regulator, LysR family protein
           [Vibrio alginolyticus 12G01]
          Length = 291

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 133/290 (45%), Gaps = 15/290 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +KL +F  VA++ +F+ AAEQL +S+S +S QI  LE+E+   L  R  R + LT +G 
Sbjct: 7   IEKLMLFAEVAQTLNFSRAAEQLGISKSYLSEQIKRLESELATPLIVRTTRSVRLTAEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +     ++  ++   +  L + S +  G +R+       + +L      F  L+P+++ 
Sbjct: 67  SIFAQAEDLKRRVMEMEKSLSQRSEQIDGLIRLTAPKMFAEAVLHDLCVAFRALHPNVEF 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++   +  +++    D A R  +     ++I   L+  H    A+P YL+    P ++ 
Sbjct: 127 EILSSYQAFNLTETSVDFAFRATR-TPPENMIAHHLLDYHHWLVASPQYLQEEGTPETLD 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  +T        +    W         +     L  N    + +  + G+GIA L
Sbjct: 186 DLQEHQCLT-------TLHQKEWPLKTGTVQTQ---GWLSSNENRLLKESALSGNGIARL 235

Query: 245 PDYIVK---DNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y V+   ++  LV+++ E+       VY  YP+ +  + K +AF  F+
Sbjct: 236 ASYFVEQDVEHGRLVQVLSEETDHQHNAVYLVYPQLISQSAKTRAFIEFV 285


>gi|82776694|ref|YP_403043.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|309788986|ref|ZP_07683581.1| uncharacterized HTH-type transcriptional regulator ycjZ [Shigella
           dysenteriae 1617]
 gi|81240842|gb|ABB61552.1| putative transcriptional regulator LYSR-type [Shigella dysenteriae
           Sd197]
 gi|308923257|gb|EFP68769.1| uncharacterized HTH-type transcriptional regulator ycjZ [Shigella
           dysenteriae 1617]
          Length = 299

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 120/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSILGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDACVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|326318592|ref|YP_004236264.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375428|gb|ADX47697.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 311

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 126/292 (43%), Gaps = 5/292 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  G F  AA  L LS ++++R ++ LE  +G +L  R  R ++LTE G    
Sbjct: 7   MRVFQSVADEGGFAAAARALDLSPAAVTRLVADLEDHIGTRLLQRTTRRVSLTEAGEAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++      Q  + + +G LR+     L  ++L   +  F   +P + +++ 
Sbjct: 67  LRVRSILADVDEAFAVAQAHTSEIAGVLRLLAPPALAVHILAPLVAGFRQAHPRVTLEIH 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +D  +   D  +       ++++I R +V++     A+P YL+    P   ++L 
Sbjct: 127 A-DASLDPPIGDYDITLLGADERFNANVIARPIVSLDGIVCASPEYLRAHGIPQVPEDLK 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
            H  +       +           +    E  +  + V N   ++++  + G+GI+  P 
Sbjct: 186 HHQCLLRRRSETRPGVMRLLEGGDEGRAVEVAVQPVCVSNHIDTLLRATLDGAGISSQPL 245

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +      +  LVR++E   T  FT+Y   P       + +AF +F+  + R
Sbjct: 246 DLTAPYLRSGRLVRVLESWTTGHFTLYAALPSRKFMPARTRAFLDFLSQRTR 297


>gi|261212768|ref|ZP_05927052.1| transcriptional regulator LysR family [Vibrio sp. RC341]
 gi|260837833|gb|EEX64510.1| transcriptional regulator LysR family [Vibrio sp. RC341]
          Length = 295

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 130/301 (43%), Gaps = 13/301 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIKVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G LRI  T+ +G   L   L EFL  YPD
Sbjct: 61  AGALFYQRAKAQLESWQSVVDETRSVNQTPAGLLRIGATLAVGSKFLMQYLDEFLQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQLI       +   + D  I R    + S S     L       YA+PHYL     P
Sbjct: 121 IRIQLITT-TPGQLPELHLDLFISREIDQLNSLSFKATPLFEYQAGFYASPHYLAKQGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++QEL +HN++ +G+   +            +             +  ++      G G
Sbjct: 180 QTLQELTEHNVLCWGENTFR-------EVKTSQGKRITLTGNFATTNPEALFYAGKAGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I +    ++K+      LVRI+ DV     TV+  YP+      + + F + +  K    
Sbjct: 233 IIVTGHIMIKEELKQGTLVRILPDVTIDQTTVFAYYPKLEYQHTRTQLFLDHLKQKLAQA 292

Query: 298 K 298
           K
Sbjct: 293 K 293


>gi|163804072|ref|ZP_02197868.1| DNA-binding transcriptional activator GcvA [Vibrio sp. AND4]
 gi|159172116|gb|EDP57056.1| DNA-binding transcriptional activator GcvA [Vibrio sp. AND4]
          Length = 295

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 118/290 (40%), Gaps = 11/290 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF   AR  SFT AAE+L ++Q+++S QI  LE  + +KLF R  R L LTE+G     
Sbjct: 1   RVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLSLKLFRRRNRSLLLTEEGQSYFL 60

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              +++  +     ++ E S    G L I+         L   L +F    PDI +++  
Sbjct: 61  DIKDIFTSIAEATDKVLERSE--KGALTISLPPSFAIQWLVPRLADFNAQEPDIDVRIKA 118

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            + D     D  D AI   +      L   KL    +    +P  L   +   S+ +L  
Sbjct: 119 VDMDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPSLLLGNKPLESLSDLKL 177

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H L+          +D+   A      G         +    ++Q    G G+AL  + +
Sbjct: 178 HTLLH-----DTSRKDWKQFARQQNIEGINVNHGPIFSHSTMVLQAAAHGQGVALGNNVL 232

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +   +   L+   ++V+      Y    E   + G++  FR+++   AR
Sbjct: 233 AQPEMEAGRLIAPFDEVLVSKNAFYVVCHEQQADMGRIATFRDWMLATAR 282


>gi|149187920|ref|ZP_01866216.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148838316|gb|EDL55257.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 304

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 123/290 (42%), Gaps = 7/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  V    SF  AA QL++  +++SR+I  LE ++G KL  R  R L+LTE G
Sbjct: 3   ELSALPLFAKVVELSSFAEAARQLNVPTTTVSRKIQQLEHDLGGKLLNRSTRSLSLTELG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++      +   +     + ++ + +P G L I     L Q+LL     EF  LYP I+
Sbjct: 63  IQVLPKAQLIADTVAELYSDAEDMANQPIGTLTITAPKALSQDLLAPMFAEFRALYPTIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L   N+  D++    D A RL  P+  SSL+   L  +     A+  Y+    EP   
Sbjct: 123 INLASSNRYQDLTKQSIDFAFRLG-PLHDSSLVALTLSPVKYVLAASTQYIDKYGEPKHP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +   I   + +      +   A     I     S L  + +    +  +  +GI  
Sbjct: 182 LELYQKPCI--KNHVEGYFLPWR-FARNSEEIEIAHNSELISDDFNVTKELALHHAGICY 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP  +++       +  ++E  +    T+   YP+      K + F  FI
Sbjct: 239 LPYSLLRQEIQCGAIKTLLEPWVPQDRTMLLVYPDKRHLPLKSQLFIEFI 288


>gi|157963506|ref|YP_001503540.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848506|gb|ABV89005.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 316

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 141/297 (47%), Gaps = 7/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + + +F+ +  +GS   AA+ L+L +S++SR++  LE E+ +KLF+R +R +TLT  
Sbjct: 1   MKTEDIALFHRIVETGSLVEAADILNLPKSTLSRRLQALEDELNVKLFHRQSRAMTLTAS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +  ++ +   LE T  EL     + +G LRI          +   + EF+ L+P++
Sbjct: 61  GSHFYDKSTAMLATLEQTLSELSGEESEVTGHLRILIFPVPELIHITHAIFEFMDLHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I+  +  D+  +  D A  L      + ++ R +++  +H +A+P YL     P S
Sbjct: 121 TVEIIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHVISEMVHFFASPEYLAKAGRPTS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +HN I F     +   +       DR +       L VNS  + ++  ++G GI+
Sbjct: 181 PDELPQHNSILFRYPNGRIFNEVP--FGKDRTLSVK--GNLCVNSLATCLEATLMGRGIS 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++P    K++     L  + EDV       +  YP     +   + F +++     +
Sbjct: 237 MMPLPFAKEHIASGELEMLFEDVEPYEGKCFLVYPSRRFISLASQRFIDYMMTAMEE 293


>gi|73542742|ref|YP_297262.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72120155|gb|AAZ62418.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 300

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 120/296 (40%), Gaps = 10/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +  F  +  +G+   A  +  +++S +SRQ+  LE + G +L  R  R L +TE 
Sbjct: 1   MDLNLIEAFVDIVDAGNLAEAGRRRGVTRSQVSRQLRELEQQAGAQLLRRTTRRLEMTEP 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++    +  ++ + Q E+        G +R++    LG   +   L +F   YP I
Sbjct: 61  GQALYQHGLRILQEVASAQAEIDSLGKTLRGHVRVSMPTGLGDTFIAPLLLQFAQRYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++   N+ +D+     D A+R+         + R++  I     A+P YL+    P  
Sbjct: 121 TLRVFFANRVVDLIASEIDVALRVTSAPPLDH-VAREICPIDWRLCASPEYLERVPAPRV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L + + +      P        L    +         LQ   +  ++Q  + G GI+
Sbjct: 180 PVDLARCHFLC----PPYGSRFLLALNRNGQREEVELAPHLQSEHFRFLLQAVLEGHGIS 235

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLK 293
           LLP Y+  +      LV ++ D         +Y     +   T   +A   F+  +
Sbjct: 236 LLPRYMGWEEMRQGRLVPVLSDWKPEGLGSSLYVITTPSRHPTMATRALIAFLKEE 291


>gi|94314284|ref|YP_587493.1| putative LysR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93358136|gb|ABF12224.1| putative transcriptional regulator, LysR family [Cupriavidus
           metallidurans CH34]
          Length = 300

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 127/295 (43%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L  F  V  SGS T AAEQL L+ S+ SR +S LE ++   L  R  R L LT
Sbjct: 1   MKTTIDELLAFAAVVDSGSITAAAEQLGLTISATSRTLSRLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+        +   ++  + ++    ++P G+LR+        +++   +  F   YP
Sbjct: 61  EEGAAFLEHARAILAMVDEAEEQMAARQMRPVGRLRVDAATPFMLHVIVPLVAGFRASYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  +   ID+     D A R+ + ++ S+L  R +    +   A+P YLK    P
Sbjct: 121 EVELELNSNEGFIDLIEKRTDVAFRIGQ-LKDSTLHARPIGISQIRVLASPEYLKRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H L+ F    P+ + D  W    D          +  +S  ++    + G G
Sbjct: 180 TKPAQLAQHALLGFTQ--PESLND--WPLRDDAGGVVHIKPTIASSSGETLRSLALAGQG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIF 291
           I  L D++    + +  LV++           +   Y        ++  F + + 
Sbjct: 236 IVCLSDFMTLEDRQSGRLVQLFAKQTLDVRQPINAVYYRNTALASRITCFLDHVV 290


>gi|254295504|ref|YP_003061526.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
 gi|254044035|gb|ACT60829.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 294

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 131/290 (45%), Gaps = 6/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              WD  R+F  V   GS + AA +L LSQ ++ +++  LE  +G  LF R   GLT T 
Sbjct: 4   QISWDDQRIFLAVLEEGSLSAAARKLGLSQPTVRKRLEILEHALGCVLFTRSVNGLTPTP 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +   LH    ++    +    +      + SG++R++    +G  ++   L     ++P 
Sbjct: 64  KARNLHDAAKKMALASDLFVRQSTVKKGEISGRVRLSVPDFMGIEVVPNFLTSLNEVHPA 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI+L L NK  ++     D AIR   P Q + LI ++L  I +  +A+  YL     P 
Sbjct: 124 IQIELELSNKPANLLDQEVDIAIRTIAPHQDA-LIAKQLPPIQLGFFASKKYLAKRDIPQ 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ + + HNLI      P        +A    P        L+ +++ + +     G GI
Sbjct: 183 NLSDFEMHNLIG-----PDRNRTDIAIAQSISPHFSDANIVLKCDNHPAHLSAARAGLGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A+        +PNLVRI+ D I    +V+    E  K+  +++A  + + 
Sbjct: 238 AVAQIPAGNKDPNLVRILPDFIVADMSVWVVTHENFKHDPRIRAVFDHLV 287


>gi|330817226|ref|YP_004360931.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327369619|gb|AEA60975.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 303

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 126/295 (42%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVKVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +    +  + EL       +G L ++     G+  +     EF+   PD
Sbjct: 61  EGAAFLERCRGLLGDWDQAENELAAGRRAVNGHLIVSAPAAFGRKHVAPLAPEFIADKPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL T        P Y +    P 
Sbjct: 121 LQLSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLATNRRVVCGTPEYFRKHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L +HN + F     +  ++  W    +  +   R++  L  N    + ++   G G
Sbjct: 180 SLDDLLRHNCLAFNL---QGGQNRGWYFRRNGKLVTIRVAGNLDCNDGELLHRWASEGRG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     + +    +   L  ++++   P + +   YP+      +++ F +++  
Sbjct: 237 LGWRSTWEIARQLETGELETVLDEFALPDYDILAVYPQQRYVPARVRYFIDYLRE 291


>gi|229589379|ref|YP_002871498.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361245|emb|CAY48109.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 327

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/303 (22%), Positives = 130/303 (42%), Gaps = 15/303 (4%)

Query: 1   MSFDW-----DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           MS +       ++ +F  V  +GSF+ AA Q+  S SS+SR IS LE  +  +L  R  R
Sbjct: 1   MSINLPLSLLGEMAIFVNVVEAGSFSEAARQMGASPSSVSRSISRLEKALATRLLQRTTR 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            L L+E G ++ +   E+ +   +      + + +  G +R++    +G+ ++  ++ EF
Sbjct: 61  KLRLSEGGEEVFKRCQEMVNAARSVMEVSGQFNHEAEGLVRVSVPKAVGRFVVHPHMPEF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           L  YP + +QLIL+++ +D+  D  D +IR+        L+ R+L+ I     A P YL 
Sbjct: 121 LRRYPKVDVQLILEDRQVDMIDDNVDLSIRITDS-PPPGLVGRQLLPIEHLLCATPQYLA 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P    +L +H+ I  G+        F       + +          N     +   
Sbjct: 180 EHGTPSHPHDLLEHSCIYLGETPGDSRWKFR---QAGKAVTVSVRGRYAANHTGVRLDAV 236

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +   GI  LP +  +   +   LV+++       +     +  +        KL+ F ++
Sbjct: 237 LQHVGIGSLPYFTARHALEEGRLVQVLPAWDFIASYHGEAWLLHSPTRYLPPKLRVFIDY 296

Query: 290 IFL 292
           +  
Sbjct: 297 LVA 299


>gi|167562474|ref|ZP_02355390.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167569657|ref|ZP_02362531.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 303

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 122/295 (41%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLIYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  +    + E+       SG L ++     G+  +      F+   PD
Sbjct: 61  DGAAFLERCRGLLSEWAQAENEIAAGRRAVSGHLIVSAPAAFGRKHVAPLAPAFIADKPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 LQMSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L  HN + F     +  ++  W    +  +   R+S  L  N    + ++   G G
Sbjct: 180 TLDDLAAHNCLAFNL---QGGQNRGWYFRRNGKLVTMRVSGTLDCNDGELLHRWASEGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +     + +        L  ++++   P + +   YP+      +++ F +++  
Sbjct: 237 LGWRSTWEIAQQLARGELETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYLRE 291


>gi|153008401|ref|YP_001369616.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560289|gb|ABS13787.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 293

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 134/283 (47%), Gaps = 7/283 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    AA++L L+ ++++R+++ LET +   L  R   G TLT+ 
Sbjct: 1   MNWDDIRIFLAVARSGQILGAAKRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTQA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + +  +  + +  SG +RI      G N L   L      YPD+
Sbjct: 61  GEEFLLAAERMEAEMLSARSHVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P +   LI R+LV   +  YA   YL+    P +
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERP-EQGRLIARRLVDYTLGLYAHRSYLEANGTPEN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H LI + + +       N        I        +V+S L  ++    G+GI 
Sbjct: 180 TDDLARHRLIGYVEDL-----VINPSLAYAPEISRDWKPAFEVSSALGQVEAVRAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           +L  +I + +P+LV I+ D +      +  Y E+ +   ++ A
Sbjct: 235 ILHAFIARADPDLVPILPDRVI-RRAYWLAYHESARTLRRVTA 276


>gi|119468712|ref|ZP_01611764.1| putative transcriptional regulator with periplasmic binding domain
           (LysR family, YafC, YeaT) [Alteromonadales bacterium
           TW-7]
 gi|119447768|gb|EAW29034.1| putative transcriptional regulator with periplasmic binding domain
           (LysR family, YafC, YeaT) [Alteromonadales bacterium
           TW-7]
          Length = 304

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 73/286 (25%), Positives = 139/286 (48%), Gaps = 7/286 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
              V   GSF  AAE  ++ +S IS+QIS LE E+G++L  R  R  +LT  G+++ +  
Sbjct: 2   LLEVVEQGSFAKAAELRNIDRSVISKQISRLEDELGVRLLNRTTRSFSLTAAGAEMIKKA 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E+   L  T    +   ++P G L+I ++  +G+  LQ  L +F   +P ++++L LD+
Sbjct: 62  GELRELLGETVRMAENYHLEPRGVLKITSSTLIGRRYLQPVLNDFQKRFPQVEVELRLDD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +DI  +  D A R+ +P + SSLI RK+    +   AAP ++     P +++EL    
Sbjct: 122 RLVDIVSEGFDLAFRIGEP-KDSSLIARKIARNRLLIVAAPEFISTYGMPSTMEELADLP 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
             ++     + +E  ++  +   P  +   S  + N   +++   + G+   + P +I+ 
Sbjct: 181 AASYASNSMR-VETVDYYNSSGEPCEQKIKSVYRANDAEALLMKAISGTAYFVAPAFIIG 239

Query: 251 D---NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
           D      L+ I+ DV    +  +Y  YP       + + F + +  
Sbjct: 240 DEITEGKLIPILTDVKLMDYSAMYAVYPH-RDLPVRTRLFFDAVRE 284


>gi|152997891|ref|YP_001342726.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150838815|gb|ABR72791.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 320

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 64/302 (21%), Positives = 125/302 (41%), Gaps = 10/302 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LRV   VA   S T AA  L +  ++ S  +  +E  +G++LF R  R L L+  
Sbjct: 1   MQLEDLRVVLKVAEFRSITAAATHLDMQMATASAAVKRIEAALGVELFVRTTRHLRLSSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L+  +  +       SG++R+A + DLG+N+    + +F+  YP +
Sbjct: 61  GERYLPQCIAAMSMLDQAKQTIHNDLDIISGEIRLAVSSDLGRNIAIPWVDDFMEQYPQV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++  + + +ID   D  D A+R   P   S+L   K+  +     A+P YL+    P  
Sbjct: 121 TLRAHVSDSNIDFYRDALDIALRYGAP-ADSNLYGFKICNVPRLLVASPSYLELHGTPEH 179

Query: 183 IQELDKHNLITF------GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            ++L  H  + +       D      ++       +R       +    N    + ++CV
Sbjct: 180 PKDLLNHQGLFYQLQNILNDTWHFSCKESGEKPGAERSYKIKPKAYCAANDGDLVRRWCV 239

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+A+     + ++    ++V +M D   P   ++   P     T  ++  R+    +
Sbjct: 240 AGKGVAIKSSLDIANDLLVGHVVSLMPDYKIPQVELWLISPSRQSITPTVRLLRDMFRER 299

Query: 294 AR 295
            +
Sbjct: 300 TK 301


>gi|238027015|ref|YP_002911246.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237876209|gb|ACR28542.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 303

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 123/293 (41%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +       + EL       SG L ++     G+  L      F+   PD
Sbjct: 61  DGAAFLERCRGLLGDWHQAENELAAGRRAVSGHLIVSAPAAFGRKHLAPLAPAFVADKPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 LQLSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPDYFRRHGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L +HN + F     +  ++  W    +  +   R++  L  N    + ++   G G
Sbjct: 180 SLDDLARHNCLAFNL---QGGQNRGWYFRRNGKLATIRVTGNLDCNDGELLHRWVSEGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + +    +   L  +++D   P + +   YP+      +++ F +++
Sbjct: 237 LGWRSTWEIARQLETGELETVLDDHALPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|254472145|ref|ZP_05085545.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211958428|gb|EEA93628.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 316

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 130/299 (43%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + L  F  V  +GS +  A Q H+SQ ++S+Q++ LE +VG +L +R  +G+  T
Sbjct: 5   MDL-LNLLESFVRVIDNGSLSGGARQRHISQPAMSQQLNLLEGQVGQELVFRTNKGVKPT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  ++    ++  +      ++QE     SG L ++ +  +G +++   + +    YP
Sbjct: 64  AAGKIVYEHAQKMLRQSAQMFEDVQEQVAAESGSLVVSVSQPMGGDIITPLIFDLRKDYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + + ++++ ID+  D  D AIR      +S    RK+  +     A+P YL     P
Sbjct: 124 DLSVSIRMEDQFIDVVEDGIDLAIRTGATGDTSGF-SRKIAIVETCMAASPDYLARHGVP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              + L + N I + +   + + D   L    +       S         ++Q  +   G
Sbjct: 183 QIPEALSELNYIQYRN---EKLVDSLELFRHGKRHEVCVNSEFVAGHPQVMVQALLNSVG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              +P ++++   D   L R++ D       VY  YP     T K + F   +  + +D
Sbjct: 240 FTRMPLFMMQDYEDTGQLQRLLPDYQCEEKPVYLVYPSREAMTRKAEIFIEAMIERFKD 298


>gi|189352270|ref|YP_001947897.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189336292|dbj|BAG45361.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 331

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 130/294 (44%), Gaps = 7/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+F  +    SFT AA  L +S+++ +R +  LE  +G+ L  R  R L  T
Sbjct: 1   MDNPIRAMRIFARIVEMNSFTRAALSLGISRATATRTVQELEAALGMPLLVRTTRALRTT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   +R    +   ++  +  ++ ++  PSG  R+     +   ++   L  F   +P
Sbjct: 61  PEGDAYYRRCLRITADVDELEASIRRAARHPSGPQRVDLPGPVASAIVLPALGTFHARHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L +  +  D+  D  DC++RL + +  SS + R L  +     A+P YL  C  P
Sbjct: 121 DLVLMLGVSVRAADMVGDAVDCSVRLGE-LPDSSFVARPLGALERVTCASPAYLDRCGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGS 239
            ++ +LD H  +       +   + +++  VD  + + R+  +  V+   + +   V G 
Sbjct: 180 RTLDDLDSHRAVGSTSGSGQRAAECDFM--VDGAVRKIRLDVIVGVDDEHAYLACGVHGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+   P  + +   D   L  ++      +  V   Y +    +  ++AF ++I
Sbjct: 238 GLIQPPRAVAQPLIDAGLLRDVLPQWQPAAVPVSAVYVKRPHVSPGVRAFVDWI 291


>gi|220919973|ref|YP_002495276.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
 gi|219952393|gb|ACL62784.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 304

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 121/289 (41%), Gaps = 9/289 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +VF      GS T AA+ L +S++  SR +  LE   G +L +R  R L+LT  G ++  
Sbjct: 8   QVFVETVERGSATAAADALGMSRAMASRHLGALEDWTGTRLLHRTTRRLSLTLAGERVLE 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
           ++ E+            E    P+G LRIA    L +  L   L +FL  +P + I L  
Sbjct: 68  LSREMVRLAANLHAVAGEGDS-PNGLLRIAAATILSEEQLTPLLADFLRAHPRLSIDLRA 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            ++ +D+  D  D AIR+   +     + RKL        A+P YL     PL   EL  
Sbjct: 127 SDRPVDLVEDRIDVAIRIGNQL-DLGCVARKLGECRSVLCASPRYLDERGTPLQPSELHA 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  +T+ +           L      +        + N  L++ +  + G GIA+LPD+ 
Sbjct: 186 HACLTYTNFGAAEWT----LQAGGESVTVKANGPFRTNEALALRRAALAGLGIAMLPDFA 241

Query: 249 V---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           V     +  L  ++     P   ++  Y   +      +AF +++  + 
Sbjct: 242 VVGHLASGALRVVLPAWRPPPHPIHALYLSRVHLPAAARAFIDYLARRL 290


>gi|83594697|ref|YP_428449.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577611|gb|ABC24162.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 307

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 123/296 (41%), Gaps = 11/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   A+  SFT AAE L ++Q+++S QI GLE  +G+ LF R  + + +TE G 
Sbjct: 8   LNALRAFTAAAKRLSFTQAAEDLGVTQAAVSHQIRGLEDWLGVALFRRRNKQVVMTEAGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +   ++      L   +   +G L I+T        L   L  F+   PDI++
Sbjct: 68  VYALAIGQALDEIAEATAALV-RNDPRAGMLTISTMPSFAIKWLVQRLGGFINANPDIEV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L    + ++ + +  D AIR+ + +    L    L+   +    +P  ++  R      
Sbjct: 127 RLHTTRELVNFATEGIDVAIRMTREVGDD-LHADLLLEEELFPVCSPALMRGIRPLRQPS 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+         +   +WL         P      ++S L+I Q C+   G+ L 
Sbjct: 186 DLSQHLLL-----QDVGISWVSWLDPAGALDVRPARGPGYLDSALAI-QACIESQGVMLG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              +V+D+     LV      +      +   P        ++AFR +I  +A  W
Sbjct: 240 RTVMVEDDLKAGRLVEPFTLRVPSPMKYWLVCPPGHLARPGVRAFREWILAEASKW 295


>gi|150398061|ref|YP_001328528.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029576|gb|ABR61693.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 315

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 10/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F WD L+ F  VAR+G  + AA +L  S +++SR+I  LE  + +KLF R+ RG  LT 
Sbjct: 4   NFTWDDLQFFLAVARTGQLSTAARRLRTSHATVSRRIDRLEFALKVKLFERNPRGYVLTT 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  + E  Q+++ +      G +R++T    G   L   L +F+  YP+
Sbjct: 64  MGQRFVETAERIERETEQLQLDISDGMTAQRGVVRLSTLEGFGNFFLADRLSDFVGRYPN 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+   + + +S   AD A+ L  P ++       L    +H Y A  YL       
Sbjct: 124 ISLELVAIQQIMSLSRKEADVAVALAAP-KAGPYHSEVLTPYTLHVYGARSYLAGHPLIR 182

Query: 182 SIQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  +L  H    + D  +    ++    L    R       +  Q +S L+ ++    G 
Sbjct: 183 TRNDLGSHRFAGYIDDMIFTPGLDYLGELQPGLR-------AHFQSSSILTQLKAVRQGL 235

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+ +LP ++ KD P+L  ++ D I    T +      L    ++KA R+F+ 
Sbjct: 236 GLCVLPHFMAKDEPDLEIVLPDEIALQRTYWLICHRDLIGMPRVKALRDFLV 287


>gi|113970198|ref|YP_733991.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|114047613|ref|YP_738163.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113884882|gb|ABI38934.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
 gi|113889055|gb|ABI43106.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 301

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 140/297 (47%), Gaps = 13/297 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LR+F +V   GSF  AA  + + ++S+SR+I  LE ++G KLF R  R L+LT  
Sbjct: 1   MRINDLRLFLLVVELGSFASAASSIGIPRASVSRRIGELEADLGTKLFTRTTRQLSLTPT 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   H+   E+  +LE+    ++     P+G +++    +    L    L++FL  YP I
Sbjct: 61  GENYHQQLMEIIPRLESLNECVKNQRNMPTGTVKLGLVGEADV-LTHNLLQDFLKNYPLI 119

Query: 123 QIQLILDN-KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            I+  + N    DI     D  I +   I+ +S I R L+ +    YA+P Y+     P 
Sbjct: 120 TIETHVSNLGYHDILNYGLDACIHIGS-IKDNSFIARPLMRVSRKLYASPDYIATYGMPT 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S+++L++H L+ +     +  + + +       +GE R+ S +  NS   +    + G+G
Sbjct: 179 SLEDLNQHALMIYRKQNGELEDSWKF------NLGEYRVKSRVISNSSHYVRHAILNGAG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I+LL +  V ++    NLV ++ +        +  YP     T   +   + +  +A
Sbjct: 233 ISLLAELSVVEHLRLGNLVEVLPEYEVYVDDAWLVYPSRKGMTHAARLLIDSLIQEA 289


>gi|187920021|ref|YP_001889052.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718459|gb|ACD19682.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 313

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 132/292 (45%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  V  +GSF+ AA    + Q ++S+ I+ LE  +G+KL  R  R LT TE
Sbjct: 1   MDRLAAIEIFIRVVDTGSFSAAARHFDVGQPAVSKAIAQLEEWLGVKLLLRTTRTLTPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++       + +   +  + S+   SGKLR++  +   +  +   L  FL  +P 
Sbjct: 61  AGTSFYQRAKRAVEETDEAVMAARGSAAGLSGKLRVSAAVCFARLHIVPRLPAFLDDHPH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+LD+++ID+  +  D A+R+ + +  S++  R++        A P Y      P 
Sbjct: 121 LELELVLDDRNIDLVEEGIDVALRMGE-LTDSNMTARRIAEARRRVIATPAYFNRHGIPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  + +        ED+ +       +       L++ +   +        G+
Sbjct: 180 APADLLAHKCLIYTR--DGGGEDWKFRKET-AEVSVRMQGRLRITATEGLRAAVFADMGV 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+  ++       +  +V +M+D + P+ ++   YP     + K + F  F+
Sbjct: 237 AVASEWAFTPELKSGAVVSVMDDWMLPTISLSAVYPTGRLASTKARQFTAFV 288


>gi|118590614|ref|ZP_01548015.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118436590|gb|EAV43230.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 306

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 134/297 (45%), Gaps = 10/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R F  V   G+ + AA  L +S +  S ++S LE  + ++LF R  R L+ TE G+
Sbjct: 4   LENIRTFLRVYELGNMSAAARDLRISSAVASSRVSQLEEHLNVRLFQRTTRALSPTEHGN 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  +++   +E  + E+   +  P G L +A  I +GQ L+   + +F    P I I
Sbjct: 64  LFYRGATKIIEAVEEAEAEISNVTRSPRGTLFVAAPIGMGQRLIAPAIPKFKDANPLIDI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ +D++ +  D A  L  P + S+L  RK+        A+P YL     P + +
Sbjct: 124 RLRLSDRKVDLTGEGLDAAFFLGLP-EDSNLKIRKIADCSRVLCASPSYLARKGNPKTSE 182

Query: 185 EL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           EL   +H+ +           +F W    +  +    +S   + +    +  + + G GI
Sbjct: 183 ELGAGRHDCLNMRY---PGAPEFQWPLQTETGVKRVAVSGPFESDHGDVLTGWALEGHGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L P + V D   + +LV ++E+       +   Y        K++ F +F+    +
Sbjct: 240 VLKPVFEVADYLASGSLVPVLENEPPIPVQMACLYTHRRHQDPKVRLFLDFMVAHIQ 296


>gi|332678582|gb|AEE87711.1| Transcriptional regulator [Francisella cf. novicida Fx1]
          Length = 298

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LET+    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKAIGISPPVVSKQIQILETKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I++    G   L     +F + YP  ++
Sbjct: 64  LLYEKASLILNELEATEEKIFAEDILIDSELKISSPNSFGIKYLCNIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+ +     A+  YLKN   P +I+
Sbjct: 124 NINLSDSYINIIDEDFDLVIRIGA-LDDSNLITKKLMPMPSLLCASEQYLKNYGIPKTIK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  I + +       +   L +V++         +  NS   +++ C+ G GIA L
Sbjct: 183 DLENHLFIQYNN---HSSSNRIILESVNKTEIINVRQRIVTNSAEMMLKGCLDGLGIAKL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           P + + D   +  LV ++ D   P    +Y           K++    +I
Sbjct: 240 PLFEIIDKIHDKKLVHLLPDARNPIEKNLYLISSRDKYRLKKVRLLSAYI 289


>gi|171320081|ref|ZP_02909149.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171094678|gb|EDT39724.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 324

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 128/306 (41%), Gaps = 18/306 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      R F   AR  +F+ AA++L ++  ++S Q+  LE E+G++LF R+ + 
Sbjct: 1   MDLRQLPALNAIRAFEAAARHENFSRAADELFVTHGAVSHQVRALEEELGVQLFARNGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           L LT  G +  +        L     E++ S      +L ++         +   +  F+
Sbjct: 61  LCLTGAGMRYAQQVRTALMMLADATREVRASDRDR--RLVVSMLSSFAARFVTPRIGTFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P+I ++L   N   D + D  D AIR         L    L         AP  L  
Sbjct: 119 ERHPEIDVELQSTNTLTDFARDDVDLAIRFGFG-NYPGLHVEPLFDEVFFPACAPT-LNG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L  +NL+   D + +   D   L T    + EP+   L  +S   ++   +
Sbjct: 177 GKLPQTPADLVHYNLLRSDDELWRPWFDAAGLDT----LTEPKRGILYQDSSNLLL-AAI 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIAL+   +      +  LVR+ +      +  +F  P  L N  +++AFR ++  +
Sbjct: 232 DGQGIALVRRSLAVHDLLDGRLVRLFDIDGASPWHYFFVCPPPLLNAPRVQAFRAWMLDE 291

Query: 294 ARDWKF 299
              +K 
Sbjct: 292 VAQFKL 297


>gi|332184401|gb|AEE26655.1| Transcriptional regulator [Francisella cf. novicida 3523]
          Length = 298

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 136/290 (46%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LE +    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKVIGISAPVVSKQIQILEAKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 64  LLYEKVSLILNELEATEEKIFAEDILIDSELKISAPNSFGTKYLCPIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  ++I  +  D  IR+   + +S+LI +KL+ +     A+  Y+KN   P +I+
Sbjct: 124 NINLSDSYVNIIDEDFDLVIRIGA-LDNSNLIIKKLMPMPSLLCASEQYIKNYGMPKTIK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  I + +            +  +      RI     NS   ++Q C+ G GIA L
Sbjct: 183 DLENHLFIQYNNHSSSNRIILESASKTEIINVRQRI---VTNSAEMMLQSCLDGLGIAKL 239

Query: 245 PDYIVKDNPN---LVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           P + V D      L+ ++ +   P    +Y   P+      K++   +++
Sbjct: 240 PLFEVIDKIRNKKLIHLLPNSKNPLEKNLYIISPKDKYRLKKVRLLSDYL 289


>gi|78049769|ref|YP_365944.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78038199|emb|CAJ25944.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 300

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 123/297 (41%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     +  F  VAR+G F  AA+   +S S+ S  I  +E  +G++LF R  R + LT
Sbjct: 1   MSGHLADMEAFVRVARAGGFREAAKSAGVSASTYSDAIKRMEASLGVRLFNRTTRSVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ L    +    +LE  +  +      P+G LR+   +   + +L   L  F+  YP
Sbjct: 61  DAGNALLARIAPALLELENAREVVSAFRDTPTGTLRLNVPVSAARLVLPRILPAFMAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI ++++ +   +D+     D  IR  + +Q   ++   +      +   AAP YL    
Sbjct: 121 DITLEILTEESFVDVIAARCDAGIRYGERLQQD-MVAIPIGPRVQRIATAAAPGYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCV 236
            P   +EL  H+ I  G      + ++ +    +     P+   L          +Q  +
Sbjct: 180 RPTHPRELVAHDCIR-GRFPSGVIAEWEFERDGEVVTIVPQGQLLVEIGGGIELAIQAAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GSGI  L +  ++   D   L  I+     P    Y  YP        L+AF  F+
Sbjct: 239 AGSGILHLFEQWLQPQFDAGALEPILRPWWQPFQGPYLYYPNRTLTPPALRAFIEFV 295


>gi|17548655|ref|NP_521995.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430903|emb|CAD17585.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 304

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 123/299 (41%), Gaps = 13/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR---HARGLTLTE 61
            + LR F   AR  SF+ AA +L+++ +++ + +  LE  +G  LF+R       L  TE
Sbjct: 7   LNALRAFEASARHQSFSAAAAELNVTPAAVGQLVRSLEASLGTPLFHRGSGGRVRLVATE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + +L      L+E+S   SG L +  +       L   +  F   +PD
Sbjct: 67  VAQRALPDIRAGFDRLSLGLERLKEASA--SGVLTVTVSPAFAAKWLLPRIDRFQAAWPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L    + +D  +   D  +R         L+  KL+   ++   +P  L+  R   
Sbjct: 125 TDVRLDTSLRLVDFVVQGIDIGVRYGAG-SWPGLVVEKLMDEEIYPVCSPELLRRKRRLR 183

Query: 182 SIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S  +L    LI     D          WL          +   +++N+  +++Q  + G 
Sbjct: 184 SPADLAGETLIHDLSVDRHEGFASWDAWLEKAGVTTVTTKRG-MRINNSAAVLQAAIDGH 242

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL    + +D+     LVR+  +V  T +   Y  Y     +  +L AFR+++  +A
Sbjct: 243 GVALARSVMARDDLVAGRLVRLFPEVEFTSALAYYVVYRAECASLPRLVAFRDWLVSEA 301


>gi|115358924|ref|YP_776062.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284212|gb|ABI89728.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 299

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 123/297 (41%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 3   IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEVAFGQTLFTRSPSGLLPT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 63  EAALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPMLAQLRRDHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P Q + L+ R++  I +  +A   YL     P
Sbjct: 123 GLVIELVPTDRIQDVLNREADIAVRMAPPAQDA-LVARRVGEIDIGLFARDDYLARNGTP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H LI F  + P     F   A    P+ +     L+ +S L+ +     G G
Sbjct: 182 STTGELAHHALIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I    + + K +  LVR++ D  T     +    E L+ + +  A  + +    R +
Sbjct: 237 IGFCQNGLAKRDARLVRVLPDGPTMKLETWVVMHEDLRTSPRCHAVFDALANGLRAY 293


>gi|326387855|ref|ZP_08209461.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207901|gb|EGD58712.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 310

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 4/292 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + +    F  VA+ G FT AA    + ++ +SR ++ LE  +G++L  R  R ++LT+ 
Sbjct: 1   MNLNDFSYFAAVAQHGGFTAAARATGIDKARLSRCVASLEENLGVRLLNRSTRSISLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + +     V          + E   +P+G +RI  ++ L QN L   L  +L  +P +
Sbjct: 61  GQRFYHGCQAVLGSARAAMESIAELQKEPAGIVRIGCSVVLAQNYLAPILPHYLATHPKV 120

Query: 123 QIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + +   ++ I+      D A+  + + +  SSL+ R++  +            +   P 
Sbjct: 121 TVVVEHGDRWINPLDSDLDLALTTMVEALPGSSLVAREIGRVRRILVTGRTSAGHVFAPD 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    LI   + +      +       R         L  N      +    G+GI
Sbjct: 181 HPDILAHLPLIARIEDMHDGEVRWALTTDDGRDARVAAQPRLVTNDQNVQFEAAASGAGI 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLP+ +V    D+  LV ++ +  TP ++++  YP        +++F +F+
Sbjct: 241 ALLPESVVASALDDGTLVHVLPEWSTPEYSLHLVYPLPRGILPSVRSFIDFL 292


>gi|77361937|ref|YP_341511.1| LysR family transcriptional regulator [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876848|emb|CAI89065.1| putative transcriptional regulatory protein (LysR family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 303

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 133/303 (43%), Gaps = 15/303 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  V  +GSFT AA   ++  SS+SR+++ LE  +G  L  R  R + LTE
Sbjct: 1   MDQLRAIRYFSKVVETGSFTKAASTFNVPPSSLSRRVADLEKSLGATLLKRSTRLVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++  +LE +   ++     P G+LRI++ +  G+ +L   L EF  LYP+
Sbjct: 61  VGQIYYNDIQQILSQLEQSNETVRSYQTTPMGRLRISSMVGFGEQILLPLLDEFSALYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + L ++   +  D  D AIR      +  ++  +L+       A+P YLK    P 
Sbjct: 121 IVLDVSLTDQLSTLGRDDVDIAIR-GGYAPNERVLAIRLMDNGFIPVASPCYLKKHGTPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           +  EL +HN + F            WL  +D    +     + + NS   + +    G G
Sbjct: 180 NAMELKQHNGLYFKAPTGPT----PWLCNMDGQWHDVSGPAVAISNSGSWLAKKACNGEG 235

Query: 241 IALLPDYIVK---DNPNLVRI-----MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I +   + +    D+  L ++     +      +  VY  Y +      K+KA  +F+  
Sbjct: 236 ILMSTRWALAPYIDSGKLQQLHFEHELAITQNANMAVYLLYQKQRYLVPKVKAAVDFLVQ 295

Query: 293 KAR 295
           K +
Sbjct: 296 KIK 298


>gi|325528891|gb|EGD05929.1| transcriptional regulator, LysR family protein [Burkholderia sp.
           TJI49]
          Length = 309

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     ++
Sbjct: 24  RQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGEAFYRECAEVVGRVNELTDQM 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E    P+G+LRI              L EF   YP IQ+ +I++++ +D   +  D A 
Sbjct: 84  RELRATPTGRLRIQMLPGFALGHFGAPLAEFNRRYPGIQLDVIVNDRVVDPIEEGFDIAF 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           ++  PI S SLI+R+L T+     A+P YL+    P   ++L +H    +     +    
Sbjct: 144 QIFPPI-SESLIERRLFTVRRLFCASPAYLEQHGAPQHPRDLLQHTTALYSGYPSRN--- 199

Query: 205 FNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIME 260
             W  T    + E  +  + + NS   +  Y + G G+  LP  +  D      LV I+ 
Sbjct: 200 -RWTMTHGDEVVEMELPGMIRSNSVHLLRDYALTGGGVVCLPTLVASDALVAGTLVPILT 258

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D      +    YP   +   K+KA   F+  
Sbjct: 259 DYHLAPLSFAAVYPATQRQALKVKALVEFLAE 290


>gi|262042888|ref|ZP_06016033.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039728|gb|EEW40854.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 315

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 119/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  ++ +  ++ + GSF  AA+ L+LS  +++  I+ LE ++G++L  R  R L+LT  G
Sbjct: 6   DLQQIEILILIVKHGSFRQAAKALNLSPPALTVAINHLEEKLGVRLLNRSTRSLSLTAVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     + V +        L    + P G +++     +     Q     F    P++ 
Sbjct: 66  EEFLNNITPVVNDYRRVVDSLNYHRLTPEGVVKVNLPRIVIDLFFQDYFIAFKNACPNVT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLS 182
           ++L   ++ ++I     D  IR  + +    +I       + +   A+P Y++   EP +
Sbjct: 126 LELYATDRKVNIIESGFDAGIRYSQDVPKE-MISIPFGEKLSLIPVASPDYIREAGEPDT 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q L     I            + ++           I  L V++  +++Q    G GIA
Sbjct: 185 PQSLVNFRCIN-RCFPGGEKYRWEFIGPSGELSEVAVIGDLVVDADSAMIQAAESGLGIA 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +   +V       +LV ++ D   P+      YP        L+AF  ++  +
Sbjct: 244 FVYQSLVTQQLSAGSLVHLLPDYRYPADHFCVYYPSRKHIPAPLRAFIAWVMAQ 297


>gi|120608988|ref|YP_968666.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120587452|gb|ABM30892.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 298

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 133/300 (44%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V  +GS T AA QL  + S +SR ++ LE ++   L  R  R + LT
Sbjct: 1   MKTTLEELQAFAAVVDAGSVTAAAAQLEQTASGVSRALARLEKKLDTTLLRRTTRRIGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G      T  +   L+  +  +     +P+G+LR+        +++   +  F   YP
Sbjct: 61  EEGQAFLTRTRAILAALDEAEEHMAARRGQPAGRLRVNAATPFMLHVVAPLVPAFRDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D ++ID+     D AIR+   ++ S+L  R L +  +   A+P Y+     P
Sbjct: 121 QIALELDTDERNIDLLERRTDVAIRIGA-LRDSTLHARPLGSSRLRVLASPAYVATHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S   L +H L+ F       +         D     P I+    +S  ++ Q  + G+G
Sbjct: 180 KSAAALAQHTLLGFTQPEALNLWPLRG-PHGDAWAATPDIAA---SSGETLRQLALQGTG 235

Query: 241 IALLPDYIV---KDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA L D++    ++  +LV+++  D       +   Y    +   ++  F +F+  +  +
Sbjct: 236 IACLADFMTARDRERGDLVQLLARDTADVRQPISAVYYRNTQLASRIACFLDFLAARLAE 295


>gi|299068149|emb|CBJ39366.1| transcriptional regulator of Glycine cleavage system operon, LysR
           family [Ralstonia solanacearum CMR15]
          Length = 320

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 120/298 (40%), Gaps = 12/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LRVF   AR  SF+ AA +L ++  ++S Q+  LE ++G+ LF R  + +TLT  G 
Sbjct: 13  LGALRVFEAAARYESFSRAAIELFVTHGAVSHQMRTLEEDLGVPLFERRGKRVTLTHAGR 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +     +  Q   Q  +     +L I+T        L  ++  F+  +P++++
Sbjct: 73  AYADRVRD--ALDQIAQATHQLRAGNRDNRLTISTMPSFAARWLTPHIGTFIERHPELEV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L      +D + +  D A+R+        L    L+        +P +    R P +  
Sbjct: 131 ELFSSPVLVDFAREEVDVALRMGSG-NYPGLYVETLLDDVFFPICSPTF-NGGRLPRTPA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E+    L+       +  +   W             + L       ++Q    G GIAL+
Sbjct: 189 EMAGMTLLR-----SEGEQWKPWFDAAGVEGFPEPRAGLMFQDSSLLLQAAAGGQGIALI 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
              +  ++     +VR+ +  I   +  YF  P +   T K++AFR ++  +   +K 
Sbjct: 244 RPTLAFNDLMAGRVVRLFDVTIPCPWNYYFVCPHSALQTPKMQAFRAWLLPEIAAFKL 301


>gi|221214364|ref|ZP_03587335.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221165621|gb|EED98096.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 327

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 123/291 (42%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE  +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEHQSFRRAAHHLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTEAGVRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  + +++ +P G LR+  +  L    L   L  F   YP++++Q+ 
Sbjct: 67  DGCRALLEEFDHLEASVAQATHEPGGTLRVVASGLLSPGALTPLLGRFRHRYPELRVQMT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  I        + +LI + L      A A+P YL+   EP +  +L
Sbjct: 127 IAEAPLDVLDAGYDVGIVTGDRFDGNPALIAQALAPNPFVACASPAYLERRGEPRTPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H+ +       +    +  +    R           VN    +    V GSGIA+LP+
Sbjct: 187 PRHDWVALAP--HQHPGAWRLVGPDARVHTVTVRPACTVNQLALVHAAAVAGSGIAMLPE 244

Query: 247 YIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + V    D+  LVR++       P   +   YP       + ++F      
Sbjct: 245 HCVADAIDSGTLVRLLPGYRIDDPHTQLSLVYPNRQFVPARTRSFVEHAVE 295


>gi|257465153|ref|ZP_05629524.1| putative transcriptional regulator [Actinobacillus minor 202]
 gi|257450813|gb|EEV24856.1| putative transcriptional regulator [Actinobacillus minor 202]
          Length = 297

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 126/285 (44%), Gaps = 8/285 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +D+  + VF +V   GS   AAE+L ++ S++++ +  LE ++ IKL  R  R L+LTE 
Sbjct: 2   YDFKSMSVFVMVVEQGSMQAAAEKLQMTPSAVTQALQKLEQQLQIKLLNRTTRKLSLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   ++    E     ++     P G L I+       + L   LKE +  +   
Sbjct: 62  GEVFYQHVRQMQKNAENAVKCVEVLRSDPIGWLNISCPSGFMDSKLLDVLKEIIENHLGF 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +   +K++D+  +  D A+R+       ++I R +  +         YL   + P S
Sbjct: 122 SLNISFSDKNVDLIEEQVDIALRVGTGALHDTMIARHIYDVQFAILGQKDYLSKQKLPDS 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L   + I F  L P  +E    L   D+ I       ++ NS L+     + G GI+
Sbjct: 182 PEGLSALDWIHFSPLAPSEIE----LYQQDKKIKVFPNYRIKTNSLLASRCLTMKGFGIS 237

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           L P   + D      LV++  +   PS  +Y    + ++ + K++
Sbjct: 238 LQPLADLDDELHSKELVKLFPEWHLPSSPLYLVTLQRIQ-SEKVR 281


>gi|115345623|ref|YP_771805.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|115292944|gb|ABI93397.1| transcription regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 304

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 132/290 (45%), Gaps = 8/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LRVF  VA   SF  AA+ L+++ ++++R ++ LE E+  +L  R  R ++LT  G
Sbjct: 3   DLKPLRVFLEVAAQESFVRAAKALNMTPATVTRIVAKLEEELDRQLLLRTTRHVSLTSYG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + +      V    +    EL + +    G+L I   +  G  L+ G ++ F L YP+I 
Sbjct: 63  ALVAARYRPVVEAFDQVGEELTQDTQPFRGRLSINVPMSFGLRLMPGLIQSFRLAYPNID 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + + ++ +D+  +  D A+R+  P +  S I RK+  I     A+  +L     P   
Sbjct: 123 LVVRMTDRLVDVMAEECDLAVRISNPPEDKSTIWRKVCEIPRKVVASKAFLDRTTRPEHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +LD++  +++G  +    E  +W L            + L  N+   ++      +GI 
Sbjct: 183 DQLDRNFCLSYGHDV----EPESWPLHKAGMKNTFTAGTALVSNNGDVLLTMIQRDAGIV 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LLP++I  D   +  +  ++      S  +   YP        ++AF +F
Sbjct: 239 LLPEFIAADALKSETIEEVLPGWAVSSLWLSLYYPPYTTLPPLVEAFTDF 288


>gi|162452439|ref|YP_001614806.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161163021|emb|CAN94326.1| LysR-family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
          Length = 317

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 121/280 (43%), Gaps = 13/280 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L +F  +   GS + A   L L ++++SR ++ LE  +G  L  R  R L+LT+ G
Sbjct: 25  DLSGLSMFVRIVEEGSLSAAGRALGLPKATLSRNLALLEKRLGAPLLIRSTRALSLTDTG 84

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +       +  + +    +++     PSG LRI   +  GQ  +   L  F+  YP ++
Sbjct: 85  RRFFDKVQPIVREAQQATADVKILHAAPSGLLRITAPVAYGQAAIAPRLLSFMGRYPAVR 144

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +++     D AIR+   I+ S LI  KL  + M   A+P +L+    P   
Sbjct: 145 IDLHLHDGRVNLVNGGYDLAIRMGA-IEDSELISHKLADVTMVIVASPTWLEQHGMPQRP 203

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H+ +      P  ++      TV  P        +   + +        G GIA 
Sbjct: 204 AELAQHDAVV---TRPDIVQWRVGGETVRVPW------RMSTGNMIVTRDAARAGLGIAF 254

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT 280
           +P+++V  +     LVR++ DV  P       Y  A   +
Sbjct: 255 VPEFLVLRDLERGTLVRLLPDVELPVIQATALYTRAASQS 294


>gi|78063588|ref|YP_373496.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971473|gb|ABB12852.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 309

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 122/272 (44%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     ++
Sbjct: 24  RQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGEAFYRECAEVVGRVNELTDQM 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E    P+G+LRI        +     L EF   YP IQ+ +I++++ +D   +  D A 
Sbjct: 84  RELRATPTGRLRIQMLPGFALDHFGAPLMEFNRRYPGIQLDVIVNDRVVDPVEEGFDIAF 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           ++  PI S SLI+R+L T+     A+P YL     P   ++L +H    +     +    
Sbjct: 144 QIFPPI-SESLIERRLFTVRRLFCASPAYLDAHGAPQHPRDLLQHTTALYSGYPSRN--- 199

Query: 205 FNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIME 260
             W  T    + E  +  + + NS   + +Y + G G+  LP  +  +      LV I+ 
Sbjct: 200 -RWTMTRGDEVVEMELPGMIRSNSVHLLREYALSGGGVVCLPTLVASEALVAGRLVPILT 258

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D      +    YP   +   K+KA   F+  
Sbjct: 259 DFQLAPLSFAAVYPATQRQALKVKALVEFLAE 290


>gi|238782859|ref|ZP_04626888.1| Transcriptional regulator [Yersinia bercovieri ATCC 43970]
 gi|238716282|gb|EEQ08265.1| Transcriptional regulator [Yersinia bercovieri ATCC 43970]
          Length = 305

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 136/299 (45%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEKKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLSHARQIIGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QINLELNTDDLNIDLLEQRTDIAIRIG-TLRDSTIHARLLGASRVRILASPDYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI EL  H+L+ F             L      I    I  L  +S  ++    + G G
Sbjct: 180 QSIDELANHSLLGFTQPESLNQWSLPHLPAGRGSI----IPNLAASSGETLRLLALQGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  L D++ +++     LV +M D I  ++  +   Y    +   ++  F +++  + +
Sbjct: 236 IVELSDFMTREDQLAGRLVEVMADQILETWQPINAVYYRNTQLAARITCFLDYVSEQIK 294


>gi|205352161|ref|YP_002225962.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271942|emb|CAR36786.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627205|gb|EGE33548.1| hypothetical transcriptional activator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 303

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 121/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   L   +S +SR+I+ LE  +G++L  R  R   +TE G
Sbjct: 5   DLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  +    V+P G +++   + L    +   L +F+  YPD+ 
Sbjct: 65  QTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R +P + S L+ R L       +A+P  +     P +
Sbjct: 125 LQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPDLIARMGIPSA 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     ++      K +  +                 +     L++ +  + G G+ 
Sbjct: 185 PAELSHWPGLSLAS--GKHIHRWELYGPQGARAEVHFTPRMITTDMLALREAAMAGVGLV 242

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L   +VK+      LV ++E+       ++  +P        ++A  +F+  +
Sbjct: 243 QLSVLMVKEQLAAGELVAVLEEWEPRREVIHAVFPSRRGLLPSVRALVDFLTEE 296


>gi|194365966|ref|YP_002028576.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348770|gb|ACF51893.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 308

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 131/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F +V   G F+ A   L + +S +SR+I+ LE  +G++L  R  R  ++TE G
Sbjct: 10  DLNDLFYFAMVVEHGGFSQAGRALAMPKSKLSRRIALLEERLGVRLIQRSTRRFSVTEVG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R    +  + E  +  +  S  +P G +R+A  I +    +   L +FL L+P + 
Sbjct: 70  QDYYRHCKAMLVEAEAAEEAIAMSRAEPRGTIRLACPIAILHARIGPMLADFLALHPQVS 129

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL   N+ +D+  +  D AIR+R  P++ S L+ R L        A+P  L+    P  
Sbjct: 130 VQLDATNRRVDVVGEGVDVAIRVRPPPLEDSDLVVRVLARRVWCTSASPALLQRLGTPQV 189

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +       + + +++     D          L  +  +++    V G G+ 
Sbjct: 190 PADLAVMPTVDLASASQQHVWEYS--GPDDVQASVHHRPRLVSDDMIALRAAAVAGVGLL 247

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +LP  ++ D   +  L+ ++ + +     V+  +P        ++A  +++  +
Sbjct: 248 MLPRMMITDELESGALLPVLPEWVPKHGIVHAVFPSRRGLLPAVRALIDYLAER 301


>gi|269966149|ref|ZP_06180239.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829296|gb|EEZ83540.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 291

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 133/290 (45%), Gaps = 15/290 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +KL +F  VA++ +F+ AAEQL +S+S +S QI  LE+E+   L  R  R + LT +G 
Sbjct: 7   IEKLMLFAEVAQTLNFSRAAEQLSISKSYLSEQIKRLESELATPLIVRTTRSVRLTAEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +     ++  ++   +  L + S +  G +R+       + +L      F  L+P+++ 
Sbjct: 67  SIFAQAEDLKRRVMEMEKSLSQQSEQIDGLIRLTAPKMFAEAVLHDLCVAFRALHPNVEF 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++   +  +++    D A R  +     ++I   L+  H    A+P YL+    P ++ 
Sbjct: 127 EILSSYQAFNLTETSVDFAFRATR-TPPENMIAHHLLDYHHWLVASPQYLQEEGTPETLD 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  +T        +    W         +     L  N    + +  + G+GIA L
Sbjct: 186 DLQEHQCLT-------TLHQKEWPLKTGTVQTQ---GWLSSNENRLLKESALSGNGIARL 235

Query: 245 PDYIVK---DNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y V+   ++  LV+++ E+       VY  YP+ +  + K +AF  F+
Sbjct: 236 ASYFVEQDVEHGRLVQVLSEETDHQHNAVYLVYPQLIYQSAKTRAFIEFV 285


>gi|260776952|ref|ZP_05885846.1| transcriptional regulators LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606618|gb|EEX32892.1| transcriptional regulators LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 317

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 134/294 (45%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   ++L +F  V + GSFT AA   ++  SS+S+QI  LE E+G++L  R  R  +LT
Sbjct: 1   MSL-VNQLALFIDVVQQGSFTKAATLHNMDNSSLSKQIKKLEVELGVQLLNRSTRSFSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G ++      +   L            +P G++RI   + +GQ+ LQ  + +F+  YP
Sbjct: 60  PAGEEILEQAHNLVGTLGHVHSIADSYQARPKGRIRITAPLHIGQHYLQPVITQFMRSYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L +D+K  DI  D+ D A RL + ++ SSLI +K+  I     A+  ++    EP
Sbjct: 120 EVEINLQMDDKRSDIISDHFDVAFRLGR-LEDSSLIAKKIADIRPVILASESFIDQHGEP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLG 238
            + +EL     + + +  P  ++             I        +VN  L+++     G
Sbjct: 179 QTPEELMSLPSVVYSNG-PLTVDTARISEAPGGSTFINHKMTGKYKVNDVLTLLAAVQDG 237

Query: 239 SGIALLPDY-IVK--DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFR 287
            G A++    + +     NL  I+           +Y  YP   + T  ++ F 
Sbjct: 238 LGYAMISSSNLYRPVAEMNLKPILTHYTLCNRGLALYALYPHRKQ-TALVREFI 290


>gi|329890322|ref|ZP_08268665.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328845623|gb|EGF95187.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 296

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 127/290 (43%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +  +F      GS + AA +L LS +  SR+++ LE  +G++L  R +R L  TE G 
Sbjct: 2   LAEYEIFVRALEEGSLSAAARRLDLSPAVASRRLARLEDRLGVRLIERTSRRLAPTEAGR 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            ++   +++   +E  +  +   + +  G LR++     G+  L   L+ FL   P + +
Sbjct: 62  LVYDRAAQLLEGVEDLEAVVSRRTTQARGLLRVSAPTSFGRRRLAPLLQPFLAAQPRLTL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +  +D+  +  D A+R+      + L+ R L        A+P YL     P S+ 
Sbjct: 122 ELNLSDAFVDLMAEDVDVAVRIGGYEAENPLMHR-LAPNRRVLCASPAYLAEHGAPDSLD 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  +   +     +E        + P+     S ++ NS     +  + G+G+AL 
Sbjct: 181 DLRRHAQLAAENQSTWRLE------GPEGPVVFRARSRVRTNSSEVARELALAGAGVALR 234

Query: 245 PDYIVKD---NPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V D   +  L  ++     +    ++       +   +++AF +F+
Sbjct: 235 STWDVGDELRDGRLKVVLPQYAGSSDVAIFALTAGRARAETRVRAFIDFL 284


>gi|221065706|ref|ZP_03541811.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710729|gb|EED66097.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 317

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 76/310 (24%), Positives = 133/310 (42%), Gaps = 19/310 (6%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V    SF  AA QL L+ S++SR +  LE   G++L +R  R L+LTE G+++
Sbjct: 10  EMLVFAKVVELRSFAAAARQLDLTTSAVSRSVGRLEAHWGVQLLHRTTRSLSLTELGAEV 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   S++              S  P G +R+      G+  L   L      +P+++I +
Sbjct: 70  YAACSQLAQTASDIHAIAGHYSGVPRGTVRLTAPTIFGEIWLSAQLPALRRQWPELEIAV 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNC-REPLSIQ 184
            L ++  D++    D AIRL +P Q    ++ R+L  +   A A+P YL+   + P    
Sbjct: 130 SLSDQMQDLAQQGLDLAIRLTRPEQLPPHMVARELRQVRYIAVASPAYLQGLPKPPGHPL 189

Query: 185 ELDKHN---LITFGDLIPKCMEDFNWLATVDRPIG-----EPRISCLQVNSYLSIMQYCV 236
           EL + +    IT G           WL   DR            + L ++S   I+   +
Sbjct: 190 ELGRQHGVACITLG--YGDFQSRLQWLHGQDRSPAPAVTEVAVHAPLSMDSSTGIINLAL 247

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITP----SFTVYFCYPEALKNTGKLKAFRNF 289
              GI L+ D+  +    +  L++++ D          T Y  Y  +     K++A  + 
Sbjct: 248 QHQGIGLVADFAAQAVLHSGALIQVLPDWQLTGNYAPRTAYALYMPSRHLPLKVRALIDH 307

Query: 290 IFLKARDWKF 299
           +    R  +F
Sbjct: 308 LVEAGRRQRF 317


>gi|49084244|gb|AAT51185.1| PA3565 [synthetic construct]
          Length = 307

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+VF   + SGS + AA QL +S +  S  +  LE+E+ ++LF R  R L LT +G 
Sbjct: 4   YDDLQVFVHTSDSGSLSAAARQLGISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  LQ    + +G L+++   D G+NLL   L EF   YP + +
Sbjct: 64  AFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D AIR   P   SSL+   L         AAP YL    EP   
Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGAP-ADSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN + +   +   + D        R +          +    + ++ + G G+  
Sbjct: 183 DDLREHNCLLY--QLGGRVHDRWAFQRGRRSLALTVAGDRVCDDADVVRRWALAGKGLVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V ++     L  ++ +    +  +        + T  +   R F+  +
Sbjct: 241 KSWLDVAEDVRAGRLRLLLPEWQGEATPMNLLCTHRAQLTRPVTLLRAFVRER 293


>gi|153830536|ref|ZP_01983203.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148873995|gb|EDL72130.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 268

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 7/268 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   AR GSF+ AA  L L+ +++S  I  LE +V   LF R  R + LT +G 
Sbjct: 4   LNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T      L+    ++  +  + +G+L I+   DLG+NLL   + EF+ L+P++ +
Sbjct: 64  IFLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPNVTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L ++  D+  +  D AIR  +P   S+L+   L         A+P YL      L  
Sbjct: 124 KLDLSDRLTDMYANPVDIAIRYGQP-ADSNLVAMLLCDSNERVLCASPEYLAAHPPILHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN + F  ++   + +   L+                N    + +  V G GIA 
Sbjct: 183 DDLQHHNCLCF--MLADTLHNKWILSRNGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFT 268
                +     +  LVRI+ +  +    
Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVP 268


>gi|312884729|ref|ZP_07744430.1| putative transcriptional regulator protein, LysR family [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367642|gb|EFP95193.1| putative transcriptional regulator protein, LysR family [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 292

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 126/290 (43%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V ++GSF  AA  L +S+ ++S QI  LE  + +++  R  R L +T +G 
Sbjct: 6   LKAMAVFAAVVKTGSFNKAAALLQISRPAVSEQIRKLEDLLKVRVLQRSTRRLNVTPEGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           K+  +   V   L  T+  L     +  GK+R+  T D+  N L   +  F   YP I+ 
Sbjct: 66  KVLPLAQSVLESLMMTEKVL--LQDQLRGKIRLTATYDIAHNWLLPRITTFRQQYPHIEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             ++ ++ +D+  +  D AIR+   +     + RKL    +  YA+P+YL  C +P++ +
Sbjct: 124 DFLISDEKVDLIKNQIDLAIRVSS-MDELGFVARKLFEDKLEVYASPNYLNRCAKPVTTE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H  +    L      +        +    P   C   NS +      +   G+ LL
Sbjct: 183 SLLEHKWVVINQLTNGG--EITLYNDSQKVRFSPEDYC-STNSPILSRDMILADMGLGLL 239

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            D I K +     LV+++       F+ Y  YP       + +   NF+ 
Sbjct: 240 IDNIAKPHIRSQQLVKVLPGWQAQHFSCYLLYPSKSYLPRRTQVLINFLL 289


>gi|13473281|ref|NP_104848.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14024029|dbj|BAB50634.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 302

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 132/296 (44%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DW+ ++ F  VA +GS + AA +L  SQ ++ R I  LE  +G+ LF R   G  LTE
Sbjct: 3   DIDWNLIKSFVTVAETGSLSAAARKLSASQPTLGRHIGELEQALGVTLFRRGRSGYALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      V  +          S     G +RIA +  +   +L        +  P 
Sbjct: 63  AGATLFERGKAVSEQASAFSRLALGSVEAIEGTVRIAASEVVAAYVLPDMTARLGVEEPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++++  N+  ++    AD AIR+ KP Q+  L+ RK+  I + A AA  YL     P+
Sbjct: 123 IEVEIVASNQVENLLRRDADIAIRMVKPAQNE-LVARKVCDIELCACAAISYLDRRGRPV 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H LI F     +  E          P+        + ++ + + +    G+GI
Sbjct: 182 GPADLVDHPLIGFD----RSDEMIRGFTQFGIPVTRSSF-RFRADNQVVLWEAVRAGNGI 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            L  + +   +P + +++  +  PS  V+      ++++ +++   +F+  + + +
Sbjct: 237 GLGQEPLADRDPLVEKVLPGLPLPSLPVWLAMHRDVRSSVRIRRVADFLHEELKRY 292


>gi|254249178|ref|ZP_04942498.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875679|gb|EAY65669.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 309

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 121/272 (44%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     ++
Sbjct: 24  RQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTDQM 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E    P+G+LRI        +     L  F   YP IQ+ +I++++ +D   +  D A 
Sbjct: 84  RELRATPTGRLRIQMLPGFALDHFGAPLAAFNQRYPGIQLDIIVNDRVVDPVEEGFDIAF 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           ++  PI S SLI+R+L T+     AAP Y+     P   ++L +H    +     +    
Sbjct: 144 QIFPPI-SESLIERRLFTVRRLFCAAPAYVDAHGAPQHPRDLLQHTTALYSGYPSRN--- 199

Query: 205 FNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIME 260
             W  T    + E  +  + + NS   + +Y + G G+  LP  +  D      LV I+ 
Sbjct: 200 -RWTMTCGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPILT 258

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D      +    YP   +   K++A   F+  
Sbjct: 259 DYQLAPLSFAAVYPATQRQALKVRALVEFLAE 290


>gi|289625720|ref|ZP_06458674.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330869658|gb|EGH04367.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 271

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 114/267 (42%), Gaps = 11/267 (4%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
           +ISR+++ LE ++G++LF+R  R ++LT +G         + H  ET +  L+  +   S
Sbjct: 2   AISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFLPHAKTMLHASETARATLKGDTGTAS 61

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G LR+      GQ ++   L   +   P + I L L +  +DI     D AIR+   I+ 
Sbjct: 62  GVLRVTAPSVFGQTVIMPLLPVLMQENPALSIDLTLSDSIVDIVGMGIDVAIRIA-TIRD 120

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
           S+L+ R L        A+P YL    +P  ++EL  H  I    +               
Sbjct: 121 SALVARSLAPNARVVCASPDYLARHGKPALLEELRHHPCIALHAMPWWS------FTKNG 174

Query: 213 RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI-MEDVITPSFT 268
            PI          NS  ++   C  G G+A+L  + V+      +L ++  ED +    +
Sbjct: 175 EPITIRAQGPFSANSVEAVRTACKQGMGLAMLTYWDVRQEINEGSLQQVDFEDAMPEQLS 234

Query: 269 VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V    P   +   +++ F + +    +
Sbjct: 235 VTAVLPTRQRVPHRVRLFIDRLEAALK 261


>gi|126734335|ref|ZP_01750082.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           CCS2]
 gi|126717201|gb|EBA14065.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           CCS2]
          Length = 304

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 115/292 (39%), Gaps = 6/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++  F  V  +GS   A+++++++ S++ R+I  LE  +G+ L  R   G TLT +G 
Sbjct: 4   LAEIECFIAVVDAGSQLAASKKMNIAVSALHRRIKDLEARLGVALTRRTTHGTTLTPEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V   L              SG +R+      G   L   +  F  ++PDI+ 
Sbjct: 64  AYYDRCHRVVTDLNEADARANGEMHNASGLIRMTVPSVFGARHLAPIMTAFSEMHPDIRF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++ +D+  +  D AIR+    +   L    L  +H    A+P +      P +  
Sbjct: 124 DLNVSDRHVDLIEEGYDLAIRIGGD-EKPQLGTEVLFKVHYALTASPEFWAKHGFPKTPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L    ++ +          + + A   +    P       N+   +++    G G++L 
Sbjct: 183 NLAGLPVLAYRS--GSVPTHWQFRAPSGKLSKVPITPRYIANNGEFLVEAAKAGLGVSLE 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P +I  D   +  L+  + D  T         PE    + +++ F  F+  +
Sbjct: 241 PTFICGDALRSGLLIAALTDYETYDRVAQIVRPENRPLSFRVREFSKFLKAR 292


>gi|212636364|ref|YP_002312889.1| DNA-binding transcriptional activator GcvA [Shewanella
           piezotolerans WP3]
 gi|212557848|gb|ACJ30302.1| Regulatory protein, LysR:LysR, substrate-binding [Shewanella
           piezotolerans WP3]
          Length = 303

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L +AT+       L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTQLADATDRLLARSA--IGSLTVATSPSFAIQWLVPRLAKFSEKNPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI        S +   KL    +    +P  L   +      
Sbjct: 126 RIKAVDDEDGSLTDDVDVAIYYGLG-NWSGMRADKLRNEVLIPVCSPMLLSGPKPLEKPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKNHTLLHDSSR----QDWQAWFRQCGITDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV    +V+      Y    +   + GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHADIGKVAAFREWML 289


>gi|257464526|ref|ZP_05628897.1| DNA-binding transcriptional activator GcvA [Actinobacillus minor
           202]
 gi|257450186|gb|EEV24229.1| DNA-binding transcriptional activator GcvA [Actinobacillus minor
           202]
          Length = 296

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 133/297 (44%), Gaps = 16/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  +FT AAE L ++Q+++S QI  LE  +GIKLF+R  R L LTE G 
Sbjct: 8   LNALKAFESAARHLNFTKAAEDLFVTQAAVSHQIKLLEEFLGIKLFHRKNRLLELTETGL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  K+ +   +++  + +    L I+TT   G + L   L +F   +PDI++
Sbjct: 68  QYFEEIKPLLDKIASATEKVKLKASRQI--LSISTTPSFGMHWLVPRLNDFHQRFPDIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           +L    +D  +     D AI        ++L   +LV   +   A+P YLK    P++  
Sbjct: 126 RLTTMPQDEGLFGKDTDVAIYYGNG-NWNNLEAIELVKARIMLLASPDYLKEN--PITEP 182

Query: 184 QELDKHNLITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L   NLI          M D   L  V+  IG         ++    +Q    G G+ 
Sbjct: 183 KDLAGKNLIHVCSYTKWNQMVDHLNLGNVNTEIGP------MFSTTSMGIQAAKHGQGVV 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +    + +D      ++E   T  +     Y  YP  +  + K+K F N+I  + ++
Sbjct: 237 VANRMLAQDEIEAGTVVEPFSTDVYDEKAFYVVYPPQMAQSEKVKHFVNWITEEIKN 293


>gi|306843954|ref|ZP_07476549.1| LysR family transcriptional regulator [Brucella sp. BO1]
 gi|306275709|gb|EFM57433.1| LysR family transcriptional regulator [Brucella sp. BO1]
          Length = 310

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 121/293 (41%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  SF+ AA++L L+Q ++SRQI+ LE ++G  LF R +R + L+E G   
Sbjct: 14  ALAAFDAVARHESFSAAADELSLTQGAVSRQIASLEEQLGAALFDRTSRNVVLSEAGRVY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        +    +++          L +A     G   L   +  F+  YP I +  
Sbjct: 74  LQAIGPALASIRAASLQVMSQMRGT--TLNLAFLPTFGTRWLIPRIPRFVAQYPHIILNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   +  D AI + +P    +     L+   +    +P +LK+     S  +L
Sbjct: 132 ATRIGQFDFDREGLDAAIHIGQP-DWPNAECTFLMDETVAPVCSPAFLKDHPV-TSPHDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L             F  L      I  P    ++   + ++ Q CV G G+ L+P 
Sbjct: 190 LRLPLFNMASRPGAWEHWFRSLG-----ITTPVPGGMRFEQFSNVSQACVAGLGMGLMPL 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 245 FLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPTVTAFRDWLLAEVRN 297


>gi|270263314|ref|ZP_06191584.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043002|gb|EFA16096.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 305

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 126/298 (42%), Gaps = 4/298 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A +GSF+ A  +L +S +++ + ++ LET VG++LF R+ R L LTE+G 
Sbjct: 2   LGHLECFVSSAENGSFSAAGRKLGISSAAVGKNVTKLETLVGVRLFQRNTRKLILTEEGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +  S     ++     +  S    +G L+++     G + +   L  FL  YP I  
Sbjct: 62  RFLQEVSGGLQSIQCALKRVNSSGSVAAGTLKVSMGTAFGLHFVMPLLPAFLSRYPSIVP 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +D+  ++ D AI     + +  +I R+L   H    A+  YL+        +
Sbjct: 122 DWHFDNRKVDMIGEHFDAAIGGGIEL-AQGMIARELAPAHGVLVASADYLRRHPLLSQPE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243
           +L  H  I         + +       +          + VN   +  +   +G GIAL 
Sbjct: 181 QLANHAGIFIRSPQTGRIRNLPLRNADNEQRAPLMTVNMTVNEPEAAARAAEMGLGIALI 240

Query: 244 -LPDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +P  +   ++  L+R++        +VY  +P       K + F ++I  + R  K 
Sbjct: 241 AMPSALPYLESGRLLRVLPAWYVDRGSVYLYFPTTKFLPSKTRVFVDYITEQFRLQKL 298


>gi|149907575|ref|ZP_01896322.1| putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
 gi|149809245|gb|EDM69174.1| putative transcriptional regulator, LysR family [Moritella sp.
           PE36]
          Length = 302

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 119/290 (41%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT A+E+L+++Q+++S QI  LE  +GIKLF R  R L LTE+G 
Sbjct: 8   LNSLRVFEAAARHSSFTRASEELYVTQAAVSHQIKALEEYLGIKLFRRQNRALFLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  + +  L      L        G L ++         L   L  F  L+PDI +
Sbjct: 68  SYFLDIKDTFSSLVDATERLLARGA--KGSLTVSLQPSFAIQWLVPRLSLFSELHPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +  +   L  +KL T ++    +P  L   +   +  
Sbjct: 126 RIKAVDMDDGSLTDDVDVAIYYGRG-KWKDLNAQKLHTEYLVPVCSPRLLNGVKPLKTPG 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W    +          +  +    ++Q  + G G+AL 
Sbjct: 185 DLKLHTLLHDSSR----RDWTAWFKQGNITDINVNQGPI-FSHTSMVLQAAIHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + +   D   LVR   +V+      Y    E     GK+ AFR+++ 
Sbjct: 240 HSVLAQPEIDAGRLVRPFTEVLVSKNAYYVVCREEQDELGKIVAFRDWML 289


>gi|146343678|ref|YP_001208726.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146196484|emb|CAL80511.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 312

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 131/302 (43%), Gaps = 10/302 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                +RVF  V  +GSFT AA  L + +SS++RQI+ LE ++G+ L  R  R L LT+ 
Sbjct: 2   IQLTDVRVFLEVVSAGSFTTAARTLKIPKSSVARQIARLEDDIGVMLLARTTRTLELTDH 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +          ++      SG L +  +   G+  L  +L  F   +P+I
Sbjct: 62  GRTFLPYARRLLDDGIEASNVIRSHRDGASGLLTVTASSTFGRMFLAPHLSTFRKQHPNI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L    + I +  AD AIRL  PI   +L  +    +     AAP Y+K       
Sbjct: 122 RVDLKLTATKLVIGVGQADIAIRLG-PIVDPNLGVQSFGRMEFCLVAAPAYMKGRPSVTK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H LI   +L P   ++   L    +      +  + ++   +    C+   GIA
Sbjct: 181 PMDLARHELI---ELRPPASDNQLELHKDGKLQCVRCVPAMVIDDPDTAKVVCLTAGGIA 237

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKARD 296
            +P ++V +      LVRI+ D       +   Y + +  + +++A+  F+     + R 
Sbjct: 238 TVPTFLVANEIRDATLVRILPDWTLAPAPISVVYAKQIAPSLRVRAYLEFLASTIGQTRP 297

Query: 297 WK 298
           W+
Sbjct: 298 WE 299


>gi|94313019|ref|YP_586228.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356871|gb|ABF10959.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 305

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 132/293 (45%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + LR+F  V   GSFT AA  L    S +SR+I  LE  +G++L  R +R L+LTE G
Sbjct: 6   DLNDLRLFAEVVDRGSFTAAARSLGQQTSKLSRRIRALEEALGVRLLNRTSRSLSLTETG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + H+    V  +    +  + ++  +P G +RI+  + L  + +   +  ++   P +Q
Sbjct: 66  RRFHQHCLAVVAEARAAKEIVDQTRSQPQGTVRISCPVALLSSGVAETISRYVHDNPQVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + +   N+ +D+  +  D AIR+R  P++ + L  R+L        A+P   +    P S
Sbjct: 126 VLVDATNRRVDVIEEGLDFAIRVRPAPLEDTDLAVRQLGLSTFVLVASPELARLHAPPAS 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+ L     I       + +  +N +    +         L  +   S+    + G G+A
Sbjct: 186 IESLQDWPTIAMASNNERYV--WNLVDAGGKEQAFAHRPRLATDDIASLRIAAMFGVGVA 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LP   ++++     L+ ++ ++ + S  V+  +P        ++   + +  
Sbjct: 244 MLPREFIEEDLQSGRLLHLLPELASTSGLVHAIFPTRRGMVPAVRHLLDALVA 296


>gi|209550308|ref|YP_002282225.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536064|gb|ACI55999.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 299

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 130/295 (44%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            WD  R F  V + GS + AA +L L+Q +I R +  LET +G +LF R   GL  T+  
Sbjct: 6   SWDFYRAFLTVLQQGSLSAAARELGLTQPTIGRHVDALETAIGAELFTRSPNGLLPTDAA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +                + +G +R++ +  +   +L G        YP++Q
Sbjct: 66  LALKPYAETLAATTAALLRTASGERERVAGTVRVSASEVIAVEVLPGIFGPLQDAYPELQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   +   D+    AD A+R+ +P Q  +L+ R++  I +  +A   YL+    P ++
Sbjct: 126 IELSASDAIEDLVNREADIAVRMAEP-QQGALVVRRIGDIPLGFHAHRRYLERHGIPQTL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
            +L  H LI F            ++  V +    P I    + +S L+ +     G GI 
Sbjct: 185 ADLADHRLIGFD-------RQTAYVRLVTKRYEVPGIDFSYRTDSNLAQLSAIRAGVGIG 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L    + ++NP+LV ++ +        +    E+LK + + +A  + +    +D+
Sbjct: 238 LCQIGLARNNPDLVHLLPEAFKIPLATWVAMHESLKTSPRCRATFDALVKGLQDY 292


>gi|254229140|ref|ZP_04922560.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262396585|ref|YP_003288438.1| transcriptional regulator LysR family protein [Vibrio sp. Ex25]
 gi|151938431|gb|EDN57269.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262340179|gb|ACY53973.1| transcriptional regulator LysR family protein [Vibrio sp. Ex25]
          Length = 308

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   AR  SFT AA++L+++Q +ISRQI  LE  +G  +F R  R + LT  G 
Sbjct: 9   LNSLVAFEASARHLSFTLAADELNVTQGAISRQIRQLEEYLGKAMFTRANRSINLTPTGL 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++  S+    L+  QI  +    +   K+ +ATT  +    L   + +F   + DI I
Sbjct: 69  QYYQAVSQ--SLLDIAQITGEVKKWQGEQKITVATTNAMAALWLLPKVAQFQNEHDDIDI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++  +  +D+     D A+   +   +   +   L +  +    +P YL+   +P   +
Sbjct: 127 RILASDNVLDLRRLDCDIALFYCRTPPAEMDVT-TLFSEEVFPVCSPLYLEKIGQPSEPE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E+    L+   +     +    W A+V  P   PR + + +N+Y  ++Q  + G GIAL 
Sbjct: 186 EIFNKTLLYLEESQRDWVNWEQWFASVGLPNISPR-NRMNINNYPMLLQAAINGQGIALA 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKN-TGKLKAFRNFIFLKARD 296
              +V D   +  LVR +E V++         P+        +K FR ++  +  D
Sbjct: 245 WGSLVDDYLQSGALVRPVEHVLSTHSNFSMLEPKNRGLIPASVKRFREWLLHQLPD 300


>gi|332288198|ref|YP_004419050.1| DNA-binding transcriptional activator GcvA [Gallibacterium anatis
           UMN179]
 gi|330431094|gb|AEC16153.1| DNA-binding transcriptional activator GcvA [Gallibacterium anatis
           UMN179]
          Length = 303

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 122/292 (41%), Gaps = 4/292 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L   + +A+SGS + AA++L +S +++S+ +  LE E+G+ L  R  R L LTE G 
Sbjct: 6   YQQLLFLHTIAQSGSISAAAKKLEISAAAVSKSLQTLEQEMGLPLILRTTRKLVLTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL + T E  + +E     L   +  PSG ++I          +Q    +F   YP+IQ+
Sbjct: 66  KLIQQTKEAVYAIEDAFESLSSDANPPSGTVKITLPQVAFYIAIQPIYAQFCQQYPNIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L ++N  +DI   Y D  IR    I+   +  +    +    + +  Y +    P SI 
Sbjct: 126 ELSINNAMVDIVDHYFDLGIRFGHSIEEGMIAHQLTAPMREGLFVSKEYAQKYGVPQSIA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I    +    +     L            S L  N    +M   + G GI  +
Sbjct: 186 DLKNHRFIGHRFMTHNRLNPLT-LNIDGEERQIALESQLIFNDTEIMMDAIIQGMGIGRI 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            D   +       L+ ++E         Y  Y    +   ++KA   F+  +
Sbjct: 245 FDLRYQQLNLQQELIPVLEPYWRSFPAFYLYYFPKHQQLKRVKAVIEFLLGE 296


>gi|90577391|ref|ZP_01233202.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90440477|gb|EAS65657.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 305

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 131/290 (45%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L+V   VA   S T AA  L +  ++ S  +  +E  +G+++F R  R L L+  
Sbjct: 1   MLLEDLQVILKVAEFRSITAAATNLDIRTATASAAVKRVEAYLGVEIFVRSTRHLRLSSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      E    LE  ++ +QE      G++RIA + DLG+NL+   L EFLL YP++
Sbjct: 61  GERYLPQCEEALKMLEHAKVNMQEELGIIDGEIRIALSSDLGRNLVTPWLDEFLLQYPNV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++  + + +ID   D  D A+R   P    +L   K+  +     A+P YL     P  
Sbjct: 121 SLRSSISDSNIDFYRDSVDMALRYGSP-TDQNLYGFKICDVPRVVCASPSYLAENNTPTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             +L +HN + +       +    WL + +    + ++   +  N    + ++CV G G+
Sbjct: 180 PSDLLEHNALFYQLY---DVLQNEWLFSNEETTHKVKLKGNRASNDGDLVRRWCVAGKGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           A+     + D+     ++ IM++  T    ++   P     T  ++  R+
Sbjct: 237 AIKSSLDMSDDLLAGRVLSIMQEYKTAPTELWLVCPSRQSVTPTVRLLRD 286


>gi|301631559|ref|XP_002944865.1| PREDICTED: uncharacterized HTH-type transcriptional regulator
           yafC-like [Xenopus (Silurana) tropicalis]
          Length = 303

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 131/293 (44%), Gaps = 13/293 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V   GSF+    +L L+QSSIS+ I+ LE ++G++LF R  R L  T   + L+  
Sbjct: 9   AFARVYELGSFSAVGRELGLTQSSISKHIAALEADLGVQLFARTTRKLRPTHDAATLYEG 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL--- 126
              +   +++    L +   +P+G L++A     G+ +    L  F   YP I++ +   
Sbjct: 69  VQHLLDVMDSIHASLDKGRKEPAGLLKVALPDTYGRIVALPKLALFAERYPKIRLDIRLT 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L  + +++  +  +  I++ + I S+S++ R L        A+P YL    EP    +L
Sbjct: 129 RLSEQVVNLVDEGVELGIQIGE-INSASMVARSLGRSEHRLVASPQYLDRQGEPRYPTDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN + +  L       F       R + + R     VNS  +  +    G GIA +P 
Sbjct: 188 IHHNCVIYTGLAHGGRWVFE-SEHGGRQVIDVR-GSFTVNSIDAAYRLLHKGLGIARIPV 245

Query: 247 YIVKDN---PNLVRIM--EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +++ D+      VR++  ED +  +  +   Y +    + + +   NF+  + 
Sbjct: 246 WMLGDDVQQGR-VRVLLGEDYLM-AMPINIVYQQTRVLSQRARHLINFLLAEL 296


>gi|163852937|ref|YP_001640980.1| LysR substrate-binding [Methylobacterium extorquens PA1]
 gi|163664542|gb|ABY31909.1| LysR substrate-binding [Methylobacterium extorquens PA1]
          Length = 307

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 124/294 (42%), Gaps = 10/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA+  SF+ AA  L +  SS+SR+IS  E  VG++L  R  R L LT  G 
Sbjct: 7   LRDMALFVEVAKQKSFSKAAATLGMPISSLSRRISDFEQMVGLRLLDRTTRKLALTSYGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGNLKEFLLLYPDIQ 123
                 S +  + +     L   +  PSG LRI    D    + L   + EF  L+  I 
Sbjct: 67  AYLAQASRLVEEAQQAFDNLVAEAKGPSGFLRIVAPPDFWVLHHLSQIVTEFSELHEHIH 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L    ID+  D  D A+ + +P ++S LI RK+  +    +A+P YL++C  P   
Sbjct: 127 VHVDLKPSAIDLVGDNYDLAVTIEEPRETS-LIMRKVAEVRNGLFASPAYLRDCGWPKEP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H+ I               L+  D  +       L  NS     ++ + G GI  
Sbjct: 186 QDLRDHSAIVPTQGARTMWS----LSRDDETVPVLVNGPLSCNSPSLARKFALAGQGIFS 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                V+    +  L +++ +   P   VY      L    K ++F +F   + 
Sbjct: 242 THHLSVERDVVDGRLEQVLPEWDLPPTPVYIVTTSRL-LPAKARSFIDFAMKQL 294


>gi|15966203|ref|NP_386556.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307308554|ref|ZP_07588256.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307317332|ref|ZP_07596772.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15075473|emb|CAC47029.1| Putative transcription regulator [Sinorhizobium meliloti 1021]
 gi|306896921|gb|EFN27667.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306900954|gb|EFN31563.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 299

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + VF  VA +G F+ AA +L+LS+S++ + +S LE  +G++LF+R  R  +LTE+G 
Sbjct: 4   FNGISVFVEVADAGGFSAAAARLNLSRSAVGKTVSRLERRLGVRLFHRTTRTQSLTEEGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +   ++ T +  L+    +  G+LRI+  +  G+  +   L++ L  +P ++ 
Sbjct: 64  LFYESCQKALGEIRTAEDLLESGRREIRGRLRISMPVLFGRQCVAPLLRDLLRSHPRLEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  +++ ID+  +  D AIR       S L+ R +    M   A+P YL+    P ++ 
Sbjct: 124 DLSFNDRVIDLLDEGFDLAIRNSPLGNGSGLMMRTVAEQRMTVCASPAYLEAHGMPRTVA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIA 242
           EL  H  I +     +  E  +W    D    E  +  + L+++   +I      G G+A
Sbjct: 184 ELAAHEGIVYA----RGGEPLSWSFPSDGKAAEIVLPQTRLRLDDLAAIADAAAAGHGLA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP ++V++      LVR++ D     F  +  +P       KL+   +
Sbjct: 240 WLPCWLVRERVQKGELVRVLTDRPGLIFKAHAVWPRTQHMLPKLRVVID 288


>gi|238783353|ref|ZP_04627377.1| Transcriptional regulator, LysR family [Yersinia bercovieri ATCC
           43970]
 gi|238715776|gb|EEQ07764.1| Transcriptional regulator, LysR family [Yersinia bercovieri ATCC
           43970]
          Length = 298

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 125/290 (43%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D+L +F  +  +GS   AAE+  +  S+++R++  LE  +G +L +R AR +T T +G 
Sbjct: 2   LDELALFVSIVETGSLRAAAEKAAIPASTLTRRLQKLEQHLGCRLLHRSARRMTPTSEGW 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     + H L+    +L  +  + SG +RI    DL  + L      FL  YP++++
Sbjct: 62  QYYEQCRPLVHSLQQATAKLDVTLHQISGLIRILAPADLANDNLAPAWVSFLTRYPEVRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLSI 183
           +L L+N   D+    AD AIR+      S L  RKL     +   A+P YL     P S+
Sbjct: 122 ELELNNYTQDLIGSGADVAIRVGAQ-PDSLLNMRKLGQSKEILLVASPDYLAKNGIPESM 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+L+    L    M+           +         VN     +Q    G GI  
Sbjct: 181 DELRLHDLVISAPLSTWVMQH----RQNGDTVRWQPQGKFCVNGIYLALQAAQAGLGILF 236

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P  +         LVR++ +       +Y  + +      +++A  + +
Sbjct: 237 CPLSLCHNPLQCGELVRVLPEWQGAPREIYAVWSQQRYVPARVRALIDHL 286


>gi|190892871|ref|YP_001979413.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190698150|gb|ACE92235.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327194721|gb|EGE61566.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 298

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 127/297 (42%), Gaps = 11/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F  + LRVF   AR GSFT A ++L ++Q+++S QI  LE  VG  LF R  R + LTE
Sbjct: 6   QFPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    +E +  L       ++S     G L I++T       L   L  F L +P 
Sbjct: 66  TGERLAPKVTEAFAMLHDAMATARDS---VDGTLAISSTHTFASKWLAPRLGSFHLKHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++    +  ID + +  D  IR         L   +L+ +      +P   ++     
Sbjct: 123 IAVRFQASSDIIDFAREQIDVGIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAESAGGIK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L K +L   GD+  K   +   +   D      R    Q+ S        + G G+
Sbjct: 182 EPRDLLKFDLFDAGDVWWKQWFEAAGVTETDLD----RRPRNQLGSQAVEADAAIAGHGV 237

Query: 242 ALL-PDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+L P +   +     L +  E   +     +  YPE  +N  K+KAFRN+I  + +
Sbjct: 238 AILHPAFYAAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWILEEMQ 294


>gi|167573644|ref|ZP_02366518.1| Transcriptional regulator [Burkholderia oklahomensis C6786]
          Length = 301

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQTFATVVDTGSITAAAQQLELTVSATSRTLGRLEKKLQTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  + ++     +PSG+LR+        +++   +  +   YP
Sbjct: 61  EEGRAFLQNARAIIESVERAEEQMAARRERPSGRLRVDAATPFMLHVVVPLVNGYRTRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +++ ID+     D AIR+ + ++ S+L  R + +  +   A+P YL     P
Sbjct: 121 HVELELNSNDEIIDLLERRTDVAIRIGR-LKDSTLHSRAIGSSRLRILASPQYLDVHGNP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +LDKH L+ F    P+ +  +  L     P        L  +S  ++ Q  + G+G
Sbjct: 180 RRVDDLDKHTLLGFNQ--PESLNQWPVLGRDGEPYRI--APALASSSGETLRQLALQGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  L D++    +D   LV+++          ++  Y      + ++ +F +++  + +
Sbjct: 236 IVCLSDFMTARDRDEGRLVQLLPRQTREVLQPIHAVYYRNTAISSRIASFVDYLADEMK 294


>gi|331682823|ref|ZP_08383442.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
 gi|331080454|gb|EGI51633.1| putative transcriptional regulator LYSR-type [Escherichia coli
           H299]
          Length = 299

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+  LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLVYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|254523707|ref|ZP_05135762.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721298|gb|EED39823.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 300

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 138/297 (46%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+++ F  V  +GS + AAEQL  + S +SR +  LE ++G  L  R  R L LT
Sbjct: 1   MKTTLDEMQAFLAVIDTGSISAAAEQLGQTPSGVSRALGRLEDKLGTTLLTRTTRRLHLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    R    +   +E+ + ++     +P+G+LR+   +    +++   +  +   YP
Sbjct: 61  AEGEAYRRHARAIIDAVESAEEQMAARRERPAGRLRVDAAMPFVLHVIAPLVAGYRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+Q++L   ++ ID+     D AIR+  P+  S+L  R L    +   A+P YL    EP
Sbjct: 121 DVQLELNSSDRYIDLLERRTDLAIRIG-PLADSTLHARPLGRCRLRLVASPAYLDRMGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++  L +H L+ F +  P+ +  +      +  +       + V+S  ++ +  V G G
Sbjct: 180 STVAALGQHTLLGFNE--PESLNRWPLPGESEGLLLV--RPDIAVSSGETLRRLAVEGVG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  L D++   +     LV ++   +   +  ++  Y      + ++ +F +++   
Sbjct: 236 ITCLSDFVTDRDRAAGTLVPVLAAQMLEVYQPIHAVYYRNTAVSARISSFLDYLAAA 292


>gi|260775863|ref|ZP_05884759.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608279|gb|EEX34448.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 282

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 129/289 (44%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R    V  +GSFT AAE+L LS+S  S+ ++ +E ++G+ LF+R  R L+++  G   +
Sbjct: 1   MRTVVAVIETGSFTAAAERLGLSKSLTSKYVNQVEAQLGVTLFHRTTRKLSVSPPGWHYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   +V  + +    +L   +   SG LR+  +    + LL   +  F   YP+IQI L+
Sbjct: 61  RQAQQVLAQFDKLYSQLDAHNQTASGPLRVTASQGFAEELLSPLIPAFHAQYPEIQIDLL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+ +D+     D A R    +  S L  R L+++   AYAAP   +   +    + L 
Sbjct: 121 VTNQKLDLVEHGIDIAFR-ASTLDDSGLHYRPLMSLSSAAYAAPELAEQYVD--RPEAL- 176

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +   +L P      +  +   R +     +  + NS   I Q  + G G +  PD 
Sbjct: 177 --PCLIDSNLHPTARWPVSNTSQRSRAVK----TVFKSNSPRLIRQLTLAGMGASYQPDV 230

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +         L ++ ED    +F +   Y        +++ F +F+  +
Sbjct: 231 LAAPYVQRGELQKLDEDFSAMTFPLAALYRGGEYQPERVRVFIDFVAQQ 279


>gi|26990316|ref|NP_745741.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985271|gb|AAN69205.1|AE016555_3 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 306

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 132/294 (44%), Gaps = 8/294 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +   GSF  A  QL    + +S+++S LET +GI+L  R  R L  T++G +
Sbjct: 10  DELATLLALYEQGSFAAAGRQLERHPTVLSKRLSALETRLGIRLVERSTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E    +   + E  E +    G+LR+A    +G+  L G L +F+L YP + ++
Sbjct: 70  LVAKVLEASRLIAEAEEEAAEGAATVRGRLRLALPAAMGRRWLSGMLADFVLAYPQVIVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++ +D+  +  D AIR+ + +  + L+  KL        A+P YL    EP   ++
Sbjct: 130 TEYADRFVDLIGEGFDAAIRIGE-LADNRLVASKLCDHVRILCASPQYLARHGEPAQPED 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F  L          L +  R         L+ N   ++++    G GI    
Sbjct: 189 LAAHNCLGFNGLRSFPEWR---LMSDTRQTSVKVAGSLRSNDNEALLEAARRGVGIVAGG 245

Query: 246 DYIVKDNPN---LVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           D+++ ++     LVR++       +  +Y   P A  NT  +  F+ ++  + +
Sbjct: 246 DWLMGEDLASGCLVRVLAQWQLDKAAGIYLVRPTARLNTAAMGVFKAWLEDRFK 299


>gi|317491434|ref|ZP_07949870.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920981|gb|EFV42304.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 299

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 88/297 (29%), Positives = 148/297 (49%), Gaps = 7/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD LR F  VAR+GS T +A +L +SQS++SR+IS LE ++   LF RHA G  LT+
Sbjct: 3   NINWDDLRYFLSVARTGSLTGSAAELQVSQSTVSRRISALEQDLNTTLFARHATGYFLTD 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG  + R  S V   +    I L +      G +R+AT   L  N++  +L EF+  YP 
Sbjct: 63  QGRDVLRKVSAVEDSITALHIGLADLDANTEGTIRLATPESLAVNMIIPSLPEFISRYPK 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++++I      D+S   AD AIRL +P QS +LI ++L T++   YA+  YL+    P 
Sbjct: 123 LRLEIISGVGVADLSRYEADLAIRLVRP-QSGNLIMQRLGTMNSAIYASADYLQRHPAPS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S         I + D     +   +WLA             L  +S          G G+
Sbjct: 182 S-DPTSGRAFIIW-DRAYSHLPTASWLAKQGYDAN----PALITSSVAEQYAAAKSGIGL 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           ALLP ++V  + +++ ++ +    S  ++      L+++ +++A   F+      ++
Sbjct: 236 ALLPSFLVAHDADMIEVIPNNQVFSEDLWLTTHADLRSSVRIRAISEFLKELIARYQ 292


>gi|167624664|ref|YP_001674958.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354686|gb|ABZ77299.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 316

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 134/299 (44%), Gaps = 14/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            DK+  F  V R+GSF+ AA+Q  +S S+ SR I  LE  +G+ L  R  R +  T+ G 
Sbjct: 13  LDKIVYFLHVVRTGSFSDAAKQYGISASAGSRWIIELEENMGVSLLKRSTRKVVPTQAGE 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      V  +++    E+Q       G +RIA+T    +  L   + E+L  YP +  
Sbjct: 73  RLFDRFCHVNTEIDDILTEIQNLGNDDRGVIRIASTPLFAKKFLSQVVGEYLCEYPYVSF 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-----SSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +++    ++D   +  D AIR     Q      S L++R L+   + A  +P Y++    
Sbjct: 133 KIVETAYEMDHVGE-VDFAIRANATYQGYQEKDSLLVKRSLLRYPLKACCSPRYIERFSL 191

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P + +EL KHN +    L+        W+           I+  +QV     +    + G
Sbjct: 192 PETPEELKKHNCLYASTLVGGN----KWVFERGGEFTTVEIAQTVQVEDSEFLKTVALTG 247

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +GIA LP  +++   ++ +LV I++D     F     +    +   +   F++F+  + 
Sbjct: 248 AGIAYLPTSLIQKELNDGSLVPILDDYSNSHFEFGLYFRPRKQMPTRCVNFKDFLIRRV 306


>gi|149917186|ref|ZP_01905686.1| probable transcriptional regulator, LysR family protein
           [Plesiocystis pacifica SIR-1]
 gi|149822102|gb|EDM81495.1| probable transcriptional regulator, LysR family protein
           [Plesiocystis pacifica SIR-1]
          Length = 307

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 123/282 (43%), Gaps = 7/282 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +   VA +GS T AA Q++ + +++S  +  LE E+G+++F R  R +  T++G  + 
Sbjct: 1   MELLLRVAETGSMTLAARQMNRTPAAVSASVKRLEAELGVRVFDRTTRSVQPTDEGLLVL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +V  + +     ++ +  + +G + ++   D    +L     E    +P + I + 
Sbjct: 61  EGCQDVVERWQQALEGIRGAERELAGSIHVSAPADTSYQVLAPVAVEVAAAHPKLDIVVH 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +    +  D  D AIR   P+Q S+L  RKL        A+P YL+   +P   ++L 
Sbjct: 121 SSDAVHHLHRDAIDMAIRYG-PLQDSALTARKLAQWPGVLVASPAYLEQHGQPERPEQLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+T   L    + + +W    +    +  I            ++   G G+AL   +
Sbjct: 180 DHRLLT---LQLSSIPNRSWSLRSEAGPRQLEIESNLCGDGYLTRRWASEGRGVALKSLF 236

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            V D+     LVR++    +    ++  +P       +++AF
Sbjct: 237 DVIDDLESGRLVRVLPAYSSGPMPIHALFPSRRYMPARVRAF 278


>gi|262194795|ref|YP_003266004.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262078142|gb|ACY14111.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 310

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 127/301 (42%), Gaps = 12/301 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                +R F      GSF   A    +S SSISR +S LETE+ ++LF R  R L+LTE 
Sbjct: 1   MHLQAIRAFVHTVELGSFAAVARAERVSPSSISRLVSELETELCVRLFQRTTRRLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       + +  +LE  +   +E S  P G LR+A      Q  L   L  FL  YP++
Sbjct: 61  GRVYLDRVAPLLEELERARDLARELSATPRGVLRVACAPTFAQMHLARWLPSFLQRYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+L+    D+     D A+RL + +  ++L+ +KL  +     A+P +L   R  L 
Sbjct: 121 DVELVLEVGVTDLIAARIDVALRLGR-VDGATLVAKKLCEMPRVVVASPQWLDGRR--LR 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             ++ +   + F       +  F       R    PR   L     + + +  V G G+A
Sbjct: 178 PADVSREPCLVFAHAGVAPLWRFRDRRARVREYA-PRQRVL-APDGVVLRRLAVAGLGLA 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITP----SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LL  +   +   +  LV +              VY  YP       K++ F +F+    R
Sbjct: 236 LLARWACAEELASGALVDVFPRHAVTATEFDAAVYCVYPSRSYLPLKVRLFVDFVTEIFR 295

Query: 296 D 296
           D
Sbjct: 296 D 296


>gi|161619037|ref|YP_001592924.1| LysR family transcriptional regulator [Brucella canis ATCC 23365]
 gi|225627561|ref|ZP_03785598.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|254701833|ref|ZP_05163661.1| LysR family transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|254710166|ref|ZP_05171977.1| LysR family transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|254714165|ref|ZP_05175976.1| LysR family transcriptional regulator [Brucella ceti M644/93/1]
 gi|254717600|ref|ZP_05179411.1| LysR family transcriptional regulator [Brucella ceti M13/05/1]
 gi|256031661|ref|ZP_05445275.1| LysR family transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256159808|ref|ZP_05457548.1| LysR family transcriptional regulator [Brucella ceti M490/95/1]
 gi|256255063|ref|ZP_05460599.1| LysR family transcriptional regulator [Brucella ceti B1/94]
 gi|256369514|ref|YP_003107024.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260168794|ref|ZP_05755605.1| transcriptional regulator, LysR family protein [Brucella sp. F5/99]
 gi|260566376|ref|ZP_05836846.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40]
 gi|261219433|ref|ZP_05933714.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261222253|ref|ZP_05936534.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261317721|ref|ZP_05956918.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261321929|ref|ZP_05961126.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261752391|ref|ZP_05996100.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261758276|ref|ZP_06001985.1| bacterial regulatory protein LysR [Brucella sp. F5/99]
 gi|265988752|ref|ZP_06101309.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265998217|ref|ZP_06110774.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|294852331|ref|ZP_06793004.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|161335848|gb|ABX62153.1| transcriptional regulator, LysR family [Brucella canis ATCC 23365]
 gi|225617566|gb|EEH14611.1| LysR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|255999676|gb|ACU48075.1| transcriptional regulator, LysR family [Brucella microti CCM 4915]
 gi|260155894|gb|EEW90974.1| bacterial regulatory protein LysR [Brucella suis bv. 4 str. 40]
 gi|260920837|gb|EEX87490.1| transcriptional regulator [Brucella ceti B1/94]
 gi|260924522|gb|EEX91090.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261294619|gb|EEX98115.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296944|gb|EEY00441.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261738260|gb|EEY26256.1| bacterial regulatory protein LysR [Brucella sp. F5/99]
 gi|261742144|gb|EEY30070.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|262552685|gb|EEZ08675.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|264660949|gb|EEZ31210.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|294820920|gb|EFG37919.1| LysR family transcriptional regulator [Brucella sp. NVSL 07-0026]
          Length = 310

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 121/293 (41%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  SF+ AA++L L+Q ++SRQ++ LE ++G  LF R +R + L+E G   
Sbjct: 14  ALAAFDAVARHESFSAAADELSLTQGAVSRQVASLEEQLGAALFDRTSRNVVLSEAGRVY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        +    +++          L +A     G   L   +  F+  YP I +  
Sbjct: 74  LQAIGPALASIRAASLQVMSQMRGT--TLNLAFLPTFGTRWLIPRIPRFVAQYPHIILNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   +  D AI + +P    +     L+   +    +P +LK+     S  +L
Sbjct: 132 ATRIGQFDFDREGLDAAIHIGQP-DWPNAECTFLMDETVAPVCSPAFLKDHPV-TSPHDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L             F  L      I  P    ++   + ++ Q CV G G+ L+P 
Sbjct: 190 LRLPLFNMASRPGAWEHWFRSLG-----ITTPVPGGMRFEQFSNVSQACVAGLGMGLMPL 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 245 FLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEVRN 297


>gi|222112190|ref|YP_002554454.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221731634|gb|ACM34454.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 312

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 135/297 (45%), Gaps = 10/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  SG+ + AA +L ++++++S  ++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVEIVDSGNLSQAARKLKMTRANVSYHLAQLEKSLGVQLVKRTTRRVEPTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     V ++L   Q  +     +  G++ I+     GQ ++   + EF  LYP I
Sbjct: 61  GLRLYEHGRNVRNELAAAQETITSLGQELRGRVGISVPSGYGQMVMSDWMIEFKQLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  ++  D  D AIR+ +     S++ R L  +   A A+  Y      P +
Sbjct: 121 VLDVLFENRADNL-RDEVDIAIRVIQE-PPLSVVARSLGDVRYVACASLDYAARHGLPRT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL    +IT G +  +              + EP    L    +  + Q  + G G+ 
Sbjct: 179 LLELRNAPVITAGVMGRQLRLAAYQGLERQEVMLEP---TLISEHFPFLRQGVLAGLGVG 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++PDY+V+D   +  ++  ++D     F   +Y  Y      T  ++   +F+  KA
Sbjct: 236 VVPDYVVQDKIASGEVLTTLQDYRLSIFGTHMYLLYMPNRHQTRAVRTCIDFLLAKA 292


>gi|332533076|ref|ZP_08408946.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037555|gb|EGI74008.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 315

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   ++L +F  V + GSF  AA    +  SS+S+QI  LET +G++L  R  R  +LT
Sbjct: 1   MSIT-NQLTLFVDVVQKGSFAKAAALHDMDNSSLSKQIKKLETSLGVQLLNRSTRSFSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G ++      +   L            KP G LRI + +  GQ  +Q  +  F+  YP
Sbjct: 60  SAGEEILTQAHILIDTLSDIHSIADSYQAKPKGILRITSGMFFGQQYIQPAINIFMQKYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++I L+LD+K  DI  D+ D A R+ K +  S+L+ RK+  +H    A+  ++K    P
Sbjct: 120 EVKITLMLDDKRNDIIADHYDLAFRIGK-LNDSNLMARKIANMHFALVASHDFIKKHGMP 178

Query: 181 LSIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            + ++L     I +G+      +   +     D           +V+   +++     G 
Sbjct: 179 STPEDLLALPAIIYGNGDVSLDQIKLSTEPHGDEQKIHKMKGNYKVSDVRAMVDAVKAGL 238

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSF--TVYFCYPEALKNTGKLKAFR 287
           G  +L  + +++  +   LV ++ +    +    +Y  YP   + T  +  F 
Sbjct: 239 GYVMLDLFNLEEPIDKMGLVPLLTNYKLSTMGTGIYALYPHRKQ-TPLVSEFI 290


>gi|225686666|ref|YP_002734638.1| hypothetical protein BMEA_B0887 [Brucella melitensis ATCC 23457]
 gi|256111182|ref|ZP_05452218.1| hypothetical protein Bmelb3E_01091 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256262201|ref|ZP_05464733.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
 gi|265992694|ref|ZP_06105251.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|225642771|gb|ACO02684.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|262763564|gb|EEZ09596.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|263091897|gb|EEZ16219.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
 gi|326411055|gb|ADZ68119.1| conserved hypothetical protein [Brucella melitensis M28]
          Length = 310

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 127/294 (43%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    S+   S    IAT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAMASAQSTS-SFSIATLPTFGTRWLMPRILDFVEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   +   D      D AI   +P+ + +     L +  +   A+P  LK  R P S 
Sbjct: 129 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHA-TCTFLCSEVIVPVASPSLLKTRR-PASP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+   L+    L  +      W  +     G+      +   +  ++   + G G AL
Sbjct: 187 EELENEPLLH---LATRPKMWAQWFESCGVE-GQSAYRGHRFEQFSMVIGAALAGLGFAL 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++    +  LV + E  +      Y   PE        + F  +I  + 
Sbjct: 243 LPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEGKLENPLTQVFCQWIAGQV 296


>gi|209516191|ref|ZP_03265049.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503302|gb|EEA03300.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 308

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 125/296 (42%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L  F  VAR+G F  AA    +S SS+S  +  LET++G++L  R  R +  TE 
Sbjct: 1   MELNDLAAFVSVARAGGFRDAARVSGVSASSLSVAVRRLETKLGLRLLNRTTRSVAPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    + ++ ++E     L     KP+G LR+     + + +L   L  FL  YPDI
Sbjct: 61  GLRLIEKLTPLFGEMEAALDVLNGFRDKPTGTLRLNVPSSVARIVLPDVLARFLKQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPL 181
           ++++++++  +D+     D  IR  + ++   +       +   A  A+P YL     P 
Sbjct: 121 RVEVVVEDGFVDVLSIGCDAGIRYDERLEQDMIAVPIGARVQRFATAASPAYLDAHGRPG 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGS 239
              EL  H  +  G      +  + +    +     P    L     +    +   + G 
Sbjct: 181 HPSELLAHACLR-GQFASGALPTWYFERDGELLQLNPSGPLLVRPSAAIDLAVSGAIAGL 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI  L + +++   D+  L  I+E         +  YP        L+AF +F+  
Sbjct: 240 GIIHLFEDMLRPHLDSGALEAILEPWWQRFSGPFLYYPGHRHVPAPLRAFVDFLKA 295


>gi|300723974|ref|YP_003713288.1| putative LysR family transcriptional regulator [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630505|emb|CBJ91170.1| putative transcriptional regulator (LysR family) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 296

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 129/282 (45%), Gaps = 7/282 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA+ L LS+SS+SR+I+ LE  +  +L  R  R + +TE G   +
Sbjct: 1   MVVFARVVETLSFTEAAKSLRLSKSSVSREIAQLEVRLSTQLLNRTTRKIQVTEVGMSYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  + +  +  ++    +P G LR+   +  G   +   L  F+     I + L 
Sbjct: 61  QYCHRILTEAQNAEHFIRNFHEEPMGSLRLIAPVSFGSQCVVPALNHFIAGNIHISVDLE 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +K I++  D  D A+ + +      LI   L+ I    YA P YL+        ++L 
Sbjct: 121 LTDKAINMEEDQCDIAVIIGRATPYHPLIM-PLIDITWGLYATPDYLRQFSPIDKPEDLP 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +++ + F    P       +     +   E R S  ++N+ +++M   + G+GIA LPDY
Sbjct: 180 RYDYLLFRG--PAHTLSLPFRKERHKLDIEVR-SRFRINNSVALMSSALAGAGIAYLPDY 236

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           +  +      LVR++ +     +  +  +      + +++ F
Sbjct: 237 VTHEPVAEGRLVRLLPEWNMDIYQAWMLFKSESTLSARVQHF 278


>gi|86360413|ref|YP_472301.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284515|gb|ABC93574.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 263

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 109/264 (41%), Gaps = 6/264 (2%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
            +++ I  +ET +G KL +R  R   LTE G   +        ++   +    E    P 
Sbjct: 1   MVAKHIKTIETRLGAKLIHRTTRRHQLTEVGQLYYERCKRALAEVALAEASASELQSAPR 60

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G+LR+   +  G  +L   L E+   YP++ I+L LDN   D+  +  +  I +  P+  
Sbjct: 61  GRLRLVAPVSFGTQVLVPALIEYQNAYPEVSIELSLDNNVHDLVGEGFELGIHIG-PLSD 119

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
           SSL+ R L        AAP YL     P + ++L  H  +  G    +  + ++ +    
Sbjct: 120 SSLVARPLTPYRRILAAAPDYLARHGRPAAPEDLTTHLCL--GHSYWRMSDLWHLVGPGG 177

Query: 213 RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTV 269
                P       N   ++    + G+GI L P+ ++  +     L +++ +       +
Sbjct: 178 EMRDVPISGKFSTNQGAALRMAALSGAGIVLQPELLLAADIAEGRLEQVLPEWSYRPVPM 237

Query: 270 YFCYPEALKNTGKLKAFRNFIFLK 293
           +  Y    + T  L+   +F+  +
Sbjct: 238 FLIYAPNRRPTAMLRTVIDFLVER 261


>gi|114761110|ref|ZP_01441025.1| putative transcriptional regulator, LysR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114545358|gb|EAU48360.1| putative transcriptional regulator, LysR family protein
           [Roseovarius sp. HTCC2601]
          Length = 308

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 127/293 (43%), Gaps = 4/293 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +R F    R+GSFT A  +L L+ S++ + +S LE  +G KL +R  R L+LT +G 
Sbjct: 8   FSGVREFVETMRNGSFTAAGARLGLTGSAVGKSVSRLEARLGTKLLHRTTRRLSLTPEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +   ++  +  +   S + SG+L I      G+  +   L      +P + +
Sbjct: 68  RYFDGWVAILSDVQGLEQSVTVGSGQVSGRLSIHLPAAFGRRHVMPVLSRLAEDHPALDL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +    + +++  +  D  +R+      + L+ R+L    +   A+P YL     P +  
Sbjct: 128 AVSFTERRVNLIDEGVDLVVRIGALSDDADLVARRLGRQRLVICASPAYLAAHGTPAAAA 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H+ I  G         +           +   +  + +   ++++  + G+G++ L
Sbjct: 188 ALTEHDCII-GSRRDGVPPSWLLRQPDGSISTQAIRARHEFSDGDAMLEATLAGAGLSQL 246

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P ++V D   + +L+ +++DV      ++  +P +       +A  + +   A
Sbjct: 247 PTWLVSDALASGDLITVLDDVSGAEMPIHAVWPRSRYLKPGQRALIDALVADA 299


>gi|91224513|ref|ZP_01259775.1| hypothetical transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91190855|gb|EAS77122.1| hypothetical transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 307

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 141/292 (48%), Gaps = 8/292 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   +L +   V+  G+F  AA++ H+ +S++S+QI  LE E+G++L  R  R L+LT 
Sbjct: 1   MDLASQLELLLDVSEYGTFAKAADRNHIDRSALSKQIKKLEDELGLRLLNRSTRSLSLTN 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++     +V   L  T+        +P G L+I+++   G+  L   +KEF+  YP+
Sbjct: 61  AGVEMVAQAKKVREVLTETRSIAATFQDEPKGNLKISSSTFFGRAYLNQAVKEFIKQYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+LD+  +D+  +  D   R+  PI+ S++I RKL + +M   A+  ++     P 
Sbjct: 121 ITVELLLDDNRVDVIHEGFDVVFRIG-PIRESNMIVRKLASNNMALVASKSFIDKYGTPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S +EL K   + + +   K  +     +     +    I+    VN    ++       G
Sbjct: 180 SPEELIKMPAVIYSNANFKADKLRIAPSQSSSDVRTYNINGQYFVNETELMLDAVKSDLG 239

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRN 288
            AL+  + ++++    +LV+++ D   P+   +Y  Y    +     K F +
Sbjct: 240 YALIGQFFLQESLSKQDLVQLLPDYNLPAIGEIYAMYTHRNQQPLA-KLFID 290


>gi|213615474|ref|ZP_03371300.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 279

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 129/282 (45%), Gaps = 8/282 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + ++V+  V  + SF  AAE L + +S++SR +  LE+ + I+L  R  R L++T 
Sbjct: 1   MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLKIQLLQRTTRKLSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + +     V   +   +      + +P G+ ++     L ++ +   L  FL  YP+
Sbjct: 61  EGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSLARHCIIPTLPAFLCQYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI +   DC IR  +   S++L+ R L + +    A+P Y++    P 
Sbjct: 121 LELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLASFNWVIAASPTYIERYGSPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L KH+ + +  L  +     +W  T +      R+   L V+   + +Q  + G G
Sbjct: 181 NLDDLQKHHAVGY--LNHRTGRTTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKN 279
           +  +  Y+V     +  LV  M++       +   YP+    
Sbjct: 239 LIRVASYLVAPYLHSGALVTCMDNHF-YDLPLALVYPQNRFL 279


>gi|327193735|gb|EGE60614.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 300

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 126/294 (42%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            WD  R F  V + GS + AA +L L+Q +I R +  LE  +G +LF R   GL  T+  
Sbjct: 6   SWDFYRSFLTVLQHGSLSAAARELGLTQPTIGRHVDALERAIGAELFTRSPNGLLPTDAA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +                + +G +RI+ +  +   +L   L      +P++Q
Sbjct: 66  LALKPYAETLAATTAALLRTASSQRERVAGTIRISASEVIAVEVLPAILGPLQDAHPELQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   +   D+    AD A+R+ +P Q + L+ R++  I +  +A   YL+    P S+
Sbjct: 126 IELSASDAIEDLVNREADIAVRMAEPQQDA-LVVRRIGDIPLGFHAHRRYLERYGIPQSV 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H LI F             L     P+ E      + +S L+ +     G GI L
Sbjct: 185 AALANHRLIGFDRQTAYVR-----LVMKRYPVPEGIQFAYRTDSNLAQLAAIRAGVGIGL 239

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               + ++NP+LV ++ D        +    E+LK + + +A  + +    +D+
Sbjct: 240 CQIGLARENPDLVHLLADAFNIPLGTWVAMHESLKTSPRCRATFDALVSGLQDY 293


>gi|116253315|ref|YP_769153.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257963|emb|CAK09061.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 298

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 125/297 (42%), Gaps = 11/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F  + LRVF   AR GSFT A ++L ++Q+++S QI  LE  VG  LF R  R + LT+
Sbjct: 6   QFPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    +E +  L       ++S     G L I++T       L   L  F L +P 
Sbjct: 66  TGERLAPKVTEAFAMLHDAMATARDS---VEGTLAISSTHTFASKWLAPRLGSFHLKHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++    +  ID + +  D  IR         L   +L+ +      +P   +      
Sbjct: 123 IAVRFQASSDIIDFAREQIDVGIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAEAAGGIR 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L   +L   GD+  K   +   +   D      R    Q+ S        + G G+
Sbjct: 182 EPRDLLNFDLFDAGDIWWKQWFEAAGVTETDLD----RRPRNQLGSQAVEADAAIAGHGV 237

Query: 242 ALL-PDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+L P +   +     L +  E   +     +  YPE  +N  K+KAFRN+I  + +
Sbjct: 238 AILHPAFYAAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWILEEMK 294


>gi|262402756|ref|ZP_06079317.1| glycine cleavage system transcriptional activator GcvA [Vibrio sp.
           RC586]
 gi|262351538|gb|EEZ00671.1| glycine cleavage system transcriptional activator GcvA [Vibrio sp.
           RC586]
          Length = 297

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 120/288 (41%), Gaps = 11/288 (3%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G       
Sbjct: 2   FEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQSYFLDI 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            +++  L     +L E S    G L I+         L   L +F    PDI +++   +
Sbjct: 62  KDIFSSLAEATDKLLERSE--KGALTISLPPSFAIQWLVPRLADFNQQEPDIDVRIKAVD 119

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
            D     D  D AI   +      L   KL    +    +P  L   +   S+++L  H 
Sbjct: 120 MDEGSLTDDVDVAIYYGRG-NWPGLRADKLYQEFLIPLCSPTLLLGNKPMESLRDLSFHT 178

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           L+          +D+   A  +             +    ++Q    G G+AL  + + +
Sbjct: 179 LLH-----DTSRKDWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALGNNVLAQ 233

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              D   L+   ++V+  +   Y    E   + G++  FR+++  KAR
Sbjct: 234 PEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKAR 281


>gi|251790361|ref|YP_003005082.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538982|gb|ACT07603.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 304

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 120/290 (41%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L++F + AR+GS + AA Q ++   ++SR+I+ LE E+ + L  R  +G   TE 
Sbjct: 1   MDLNALKMFVLTARNGSLSAAARQNNIPLPTLSRRIAELEHELDVVLLERTVKGCRATEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    S     L   +  L  +    +G+LR+     L        +++F L YP I
Sbjct: 61  GERLLNQASLAIDMLNDVEQFLTTADSHVTGRLRLTMPQSLEPWW--EIIRQFQLTYPGI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I +    + +D+  +  D A+R+   I    ++   L+       A+P   +    P  
Sbjct: 119 AINIYTTERRVDLVSEGIDVALRVGS-ISDDDVVASHLMDFRHILVASPELFQGSEHPKE 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  +    +G +I           T D P      +   VN YL +    + G  I 
Sbjct: 178 PLDLMNYPCAAWGSVIGARPVWTLGEHTYDVP------ATFIVNDYLHLRSGALAGDYIT 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LP +   +   +  L+ ++     P  +++  + +    +   +A+  F
Sbjct: 232 ELPAFFAAEYIYSGKLIEVLPQTRLPFSSLHLVHKKHRHVSAAARAYIEF 281


>gi|150376221|ref|YP_001312817.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150030768|gb|ABR62884.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 299

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 122/292 (41%), Gaps = 9/292 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D+  L++F + A   +F   A +L ++ + ++R I+ LE ++GI+LF R  R ++LT
Sbjct: 1   MN-DYKALKIFLLAAEKRNFAQVARELDMTPAGVTRAIAALEYDLGIQLFVRTTRQVSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+            L+  + +++ ++    G+LRI+    LG+ +L   L  F  LYP
Sbjct: 60  TDGAIFAAQVQPAVAVLDNARRDVRNANKADQGRLRISAPTWLGKTILPPILSGFRELYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +  ++ L +  +DI     D AIR+         I RK+  +     AAP         
Sbjct: 120 KMSFEISLSDGLVDIVDGDYDLAIRISSAPSDKFTIWRKISVVRRVLVAAPG--SRFHAM 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L   + + +     +       L+     +          NS   +      G+G
Sbjct: 178 EHPGQLSPDDCLAYSGESRRETWV---LSDGGSSMTISAGRAFSANSGEVLADMAADGAG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +A+LP + V ++     LV I+ +       +   YP       ++ +F  F
Sbjct: 235 VAMLPGFHVAEHLRTGRLVHILREWSPQDLWLTLYYPPYQALPPRIASFSKF 286


>gi|78066646|ref|YP_369415.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967391|gb|ABB08771.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 303

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 127/296 (42%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL+  P+
Sbjct: 61  EGAAFLERCRGLLSEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLVDKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 MQLSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L KHN + F     +  ++  W       I   R++  L  N    + ++   G G
Sbjct: 180 SLDDLLKHNCLAFNL---QGGQNRGWYFQRHGKIATMRVAGNLDCNDGELLHRWVAEGLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     + +    +   L  ++++   P + +   YP+      +++ F +++   
Sbjct: 237 LGWRSTWEIAAQLETGALETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYLRAA 292


>gi|238894854|ref|YP_002919588.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547170|dbj|BAH63521.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 310

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 125/296 (42%), Gaps = 12/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D+  L++F  V  + SF+  A +  +S S ISR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   SVDFRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  +    Q  LQ+ +  P G +RI   +  GQ  +   L E    +P 
Sbjct: 66  AGRLFAASARELLGQYADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELAARHPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q  L L +  ID   D  D   R+   +  +    R   +   +  A+P Y+     P 
Sbjct: 126 LQFDLTLTDDFIDPHRDATDILFRISS-LPDAGYHARVFGSQRYYLTASPEYVSRYGSPT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L +H  + +G         F         +  P    +  N+  +++   + G GI
Sbjct: 185 SPEALHQHRTLVYGGSQGANRWLFRQREEA--WVHYPLTPLMTSNNADALLTSAIGGMGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMEDV-----ITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD++V +   N  LV +M+        TPS+ +   YP     +  ++   ++
Sbjct: 243 VLFPDWMVSEALHNGTLVTLMDRYSAAISHTPSY-IAAIYPYTRHPSLNVRTVIDY 297


>gi|160898776|ref|YP_001564358.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364360|gb|ABX35973.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 312

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 128/301 (42%), Gaps = 9/301 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   D++ VF  V    SF  AA QL L+ S++SR +  LE   G++L  R  R L+LTE
Sbjct: 5   AMPLDEMLVFARVVEHQSFAGAARQLGLTTSAVSRSVGRLEAHFGLRLLQRTTRSLSLTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+++H+    +    +  Q    +   +P G L+I+    LG   L   L  F   +P+
Sbjct: 65  AGAEIHQACLRLVADAQAVQALAGQLRQQPRGLLKISAPAVLGDIWLSPLLPGFCARWPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +Q+Q+ + ++ +D+  +  D  +R+  P Q +  L+ R L TI     A P YL    + 
Sbjct: 125 VQVQVDMTDRMVDLVAEGLDLGLRISVPGQIAPGLVARPLKTIRYVLVATPGYLARHAQI 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
               +L  H  I+ G    +   +   L     P     ++  + + S L I+     G 
Sbjct: 185 TEPGQLLAHPFISLGYGQFQNEVELRPLHPAAAPATRLLVNTPITIASSLGIIHALQQGP 244

Query: 240 GIALLPDY---IVKDNPNLVRIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI ++ D+          L  ++             V+  Y        KL+A  +++  
Sbjct: 245 GIGVVADFAAQAALQAGQLAPVLPGWALCGKYAPRVVHAVYAPTRHVPLKLRALIDYLVE 304

Query: 293 K 293
           +
Sbjct: 305 E 305


>gi|66046417|ref|YP_236258.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257124|gb|AAY38220.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 301

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 129/303 (42%), Gaps = 11/303 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++ +F  +A   SF   A    LS ++++R ++ LE+ +GI L  R  R + LTE
Sbjct: 1   MDRIQEMTLFAGLAEQTSFAGVARHFGLSTATVTRAVASLESRLGILLVVRTTRNMRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   L+  +         P G L +      G   +   +  FL  +P 
Sbjct: 61  AGQRFAADCRRLLADLDEAESAAGGLHALPGGLLTVTAPQMFGALHVVPVMTSFLERFPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+ IL ++ + +  +  D A+R+   +  SSL   +  ++     A+P YL+    P 
Sbjct: 121 VDIRAILVDRVVSMLDEGVDVAVRIG-TLPDSSLTAIQTGSVRRMVCASPGYLEKHGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L +H+ ++            +WL  + D+       S L + SY + +   +   G
Sbjct: 180 HPDDLRQHSTVS----TSTAERSPHWLFRIDDKHYSVDVASRLSLTSYQAAISAALQDWG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR-D 296
           +  +P Y ++++     L  +++        V+  Y E  + + K++AF +F     R D
Sbjct: 236 LTQVPYYQIREHLQEGRLKCVLDTFEIMPEPVHVVYLEGRRRSSKVRAFVDFCVSALRHD 295

Query: 297 WKF 299
            +F
Sbjct: 296 LQF 298


>gi|307316450|ref|ZP_07595893.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306897648|gb|EFN28391.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 310

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 15/302 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++VF      GS   AA +L  S +++SR +S LE  VG++L +R  R L L+E
Sbjct: 1   MDRIDAMKVFVAAIDEGSLAGAARRLKRSPTAVSRALSFLEAHVGVELLHRTTRTLKLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V   LE   +        P G L I++   LG+ +L+  L +FL LYP 
Sbjct: 61  AGQRYAAACRRVLTDLEEADMLAGGERSAPRGMLTISSPPILGEEILRPILDDFLDLYPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREP 180
           + ++L+L ++ +++  +  D A+R+ + +  SSLI  +L   +     A+P YL N    
Sbjct: 121 VSVRLLLLDRFVNLVDEGVDIALRIGQ-LADSSLISTRLGGDVRRVVVASPRYLANHPRI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCV 236
               +L KH ++ F +   +      W  T  +    PR         VNS  +      
Sbjct: 180 EEPADLAKHQILAFTNFGLES-----WSFTPAKGSSVPRTIQFTPRCIVNSVRAAAASAA 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+  L  Y V +   +  L  ++ D   P    +   P+   +  K++AF +F   +
Sbjct: 235 AGRGLTRLYSYHVAEYVRDGRLEIVLADAEHPPLPAHLIAPQGRMSVPKVRAFVDFAAPR 294

Query: 294 AR 295
            R
Sbjct: 295 LR 296


>gi|260553802|ref|ZP_05826072.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260405106|gb|EEW98606.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 297

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 120/296 (40%), Gaps = 11/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +A+ G+ T AAE L+ S++ +SR +  LE     +LF R+ R ++LT 
Sbjct: 1   MDTLKAIQVFVSIAQHGNLTKAAEHLNYSRAMVSRYLEHLEHTFSTRLFQRNTRKISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K       +  +    Q     +  + +G +R    + L +  +   +++F   +P 
Sbjct: 61  AGEKALLYCENILQQQLLLQEL--AAPEQHNGTIRFTCGLFLFELGVAECIRQFKRQHPH 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I   + L    +D+     D A+R+ + +    LI R +  I     A P YLK     L
Sbjct: 119 IDFDVYLTENTMDLIDAQVDLALRITQKVAD-GLIARPVCQIESVFCAHPDYLKQHSPLL 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  I          + +       +P   P     + N   ++   C+   G+
Sbjct: 178 HPRQLIQHECIAHHS----QHQYWTLFDNEQQPQNYPLNVTFKSNDVNALYDMCLHAQGV 233

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+LP  +V+ +     L  + ++   P  ++   Y          + F  F+  K 
Sbjct: 234 AMLPTLLVEKDLKEKRLTPLFKNFTAPELSLSVVYASRQHLPRITQEFIAFMIEKL 289


>gi|194363990|ref|YP_002026600.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194346794|gb|ACF49917.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 303

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 128/306 (41%), Gaps = 12/306 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     +R F   A +GS   AA  L +S +++ + I+ LE  +G++L  R  R L L+
Sbjct: 1   MNL-LQLIRSFTRTAETGSIAAAARILGISATAVGQNINRLEAHLGVRLLNRSTRQLALS 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+        +   L   Q  +    ++P+G LRIA++   G+++L   L      YP
Sbjct: 60  EAGALYLAQVRHIEADLARAQAMVTSGDIEPAGPLRIASSSAFGRHVLAPLLPSLQQRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q++L L ++ +    +  D +IR+   ++   ++ R+L  +     A+P YLK    P
Sbjct: 120 QLQLELRLTDRAVQHGPEAVDASIRIGAQLED-GVVARQLARVPFVFCASPAYLKAHGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               EL  H  +      P       W L    + +       +  +   ++    V G+
Sbjct: 179 QQPSELSGHRGLLH--RFPTDGRPLRWGLLKDGQRVDAALPPSMVCDDIDALATLAVAGA 236

Query: 240 GIALLPDYIVK---DNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI  L  ++ +    +  L  +     +       VYFC  +    T K++A    +   
Sbjct: 237 GITRLAAFVAEPYLRDGRLQAVFGADSEWRPAPMEVYFCVSDRRDFTAKIRALFEHLQAG 296

Query: 294 -ARDWK 298
            A  W+
Sbjct: 297 MAPAWR 302


>gi|325168897|ref|YP_004280687.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064620|gb|ADY68309.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 301

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VA +GSF+ AA    L+Q ++SRQ+S LE     +LF+R    L+LT +G ++
Sbjct: 6   ALRTFLRVAETGSFSAAALDRGLTQPAVSRQVSSLEEHYSTRLFHRSTNALSLTVEGEQM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             +  +V   +E             SGK+RI+    LG   +   L  FL   P + + +
Sbjct: 66  ISMAQKVIDAVEALDETASADGAIASGKVRISLPAALGLY-ISDRLPAFLKDCPGLSVDV 124

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +   +  D+  +  D  +RL + +  SSLI R++        AAP Y++    P  + E+
Sbjct: 125 LFCEQSSDLVGEGIDLEVRLGE-VSDSSLICRRIGWTTAFLVAAPSYIQRRGMPNHLLEI 183

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ I +          F   A ++R    PR   +  N+ ++  +    G G+A+L  
Sbjct: 184 PDHDCICYNRGGEGRSWSFLNGADIERIQVAPR---MVFNNAVAAHRAAQAGGGLAVLSH 240

Query: 247 YIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            I  D+     LV +M         +   Y        +++A  +F+    R 
Sbjct: 241 IIAGDDIAARRLVEVMPSFRPARLPITVVYASHRNLPLRVRAILDFLLDAVRQ 293


>gi|260221845|emb|CBA30815.1| hypothetical protein Csp_C25440 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 308

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 127/298 (42%), Gaps = 8/298 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D +  + V   V  +  F  AA +L +S  +++R ++ LE  +G++L  R  R + +T
Sbjct: 9   NMDRFHLMNVLVAVVDAQGFAGAARKLAISPPAVTRAVNELEAHLGLRLLTRTTRTVRVT 68

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +  +    +  ++      +      P G+L I   +  G   +   ++E+L  YP
Sbjct: 69  DAGERYVQDCRRILAEMAEADESVTGQHRAPRGRLTITAPVLFGCKFVTPIVREYLERYP 128

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++    +  ++ +++  +  D AIR+ + +  SS+   ++  +     A+P YLK    P
Sbjct: 129 EVNASCMFLDRVVNMVDEGVDVAIRIGE-LPDSSMQAIRVGQVRRVVCASPAYLKEHGIP 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+  +L +H +++   L P     F        P+       +   +  S +   V G G
Sbjct: 188 LTPDDLHRHAIVSTSSLAPHLEWRFR---NNGAPLSIRLQPRMSTTTNDSAIAAVVGGFG 244

Query: 241 IALLPDYIVKDNPNLVR---IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +     Y V ++    R   ++ D       ++  + E  +   +++AF +    + R
Sbjct: 245 LTRRLSYQVAEDLRARRLKTVLADYEPEPVPIHVVHREGRQAAQRVRAFIDLAIERLR 302


>gi|332528716|ref|ZP_08404693.1| transcription regulator protein, lysr family [Hylemonella gracilis
           ATCC 19624]
 gi|332041782|gb|EGI78131.1| transcription regulator protein, lysr family [Hylemonella gracilis
           ATCC 19624]
          Length = 323

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 121/301 (40%), Gaps = 8/301 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  + +  +  F      GS   AA    ++  + S+ I+ LE  +G++L +R  R L L
Sbjct: 1   MPINEFKAIATFAKAVELGSIRRAALAHGVTPQAASQAIAQLEQHLGVRLLHRTTRSLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE+G      T      L+      +++  + +G LRI         LL   L EF  LY
Sbjct: 61  TEEGQHFLENTQPALAALDRALALARDAKDEIAGPLRIVGPKSCFAALLMPLLDEFCRLY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P IQ  + LD+   +      D   R+    +   +I R+L  + +   AAP YL     
Sbjct: 121 PGIQPDVQLDDGIGNWVSSRVDVGFRIGATAE-EGVISRQLFPMQLIVCAAPSYLATHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P ++ +L  H    +   +P   + F W  TV   I    +S     N     ++  + G
Sbjct: 180 PATLDDLAAHRCSVY--RLPATGKVFPWYLTVHGDIEHRHMSPAFSTNDAELELEAVLCG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  L +++V  +     LV ++   I+    ++  Y        +++AF +    +  
Sbjct: 238 QVMGQLANFLVAAHIRAGRLVPLLLPHISHHMGLHIYYGSRAAQPKRVRAFLDLAITRLL 297

Query: 296 D 296
           D
Sbjct: 298 D 298


>gi|78060809|ref|YP_367384.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965359|gb|ABB06740.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 341

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 128/295 (43%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   AR  SFT AAE+L ++QS+ISRQI  LE  +G  LF R  + ++LT+ G 
Sbjct: 51  LSYLTAFEAAARHESFTSAAEELCVTQSAISRQIRLLEETLGCALFVRSHKAVSLTDGGR 110

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           K  R  +     L     EL+  +      + ++  + +  + L   L +F   +P+I I
Sbjct: 111 KFQRTVNAALDLLAAAAYELRVQASTS--TVTVSADLAIASHWLIPRLPKFRAEHPEIII 168

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++D     + AD AI+        +   R L+   +     P YL         +
Sbjct: 169 HVDASDEDTRNIREGADLAIQFGDGYW-PACNARFLLEEEIFPVCTPAYLARLAPMAHTR 227

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +  LI         M+   W A  D  + EPR   L +N+Y +++Q  + G GIA+ 
Sbjct: 228 DLLRATLIHLETRHWDWMDWATWFAHHDIALTEPRQD-LYINNYPAVLQAAMGGQGIAMG 286

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             Y+  D      LVR +E  +      Y  +P     + + + F ++I  +  +
Sbjct: 287 WRYLADDMLATGVLVRPIETSVRTGRGFYLLHPSDTLLSPEARIFCDWIVGQCAE 341


>gi|134292318|ref|YP_001116054.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135475|gb|ABO56589.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 315

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 135/299 (45%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  +  +GS T AA++L L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAMVDTGSITAAAQRLDLTVSAASRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQDARAIIESVENAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R++    +   A+P YL    +P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGNSRLRMLASPAYLDAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               EL KH L+ F    P+ +  +  L     P        +  +S  ++ Q  + G+G
Sbjct: 180 RKADELRKHTLLGFTQ--PESLNVWPILGADGEPTRIE--PAIWSSSGETLRQLALDGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  L D++   +     LV+++          +   Y      + ++ +F +++    R
Sbjct: 236 IVCLSDFMTAQDREAGRLVQVLTRHTLDVDQPINAVYYRNTAISSRIASFVDYLIDALR 294


>gi|254476031|ref|ZP_05089417.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214030274|gb|EEB71109.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 292

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 130/289 (44%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ +R F   A SGS + AA +L L+Q ++SRQ++ LETE+G+ LF R  R L LT+ G
Sbjct: 5   DWNHIRAFLATADSGSLSAAARKLGLTQPTLSRQVAALETELGLLLFERVGRSLELTQAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L   +  +    +   +     +    G +RI  +  +   +L   L++     P + 
Sbjct: 65  RELLDHSRTMGQAAQALSLSATGQAQSIDGTIRITASDMMSAYVLPEVLQQLQRRAPRLT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I ++  N   D+    AD AIR  +P Q   LI R +     H YA+  YL     P   
Sbjct: 125 IDVVATNDIRDLMRREADIAIRHVRPDQ-PDLIARLVQEASGHFYASRGYLDKRGRPERY 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ ++FGD          +L  +  P+   +   +  +S L   +    G GI  
Sbjct: 184 SDLADHDFVSFGDTDRMI----EYLVPMGIPVTAEQF-RIGSSSGLVAWELVKQGFGITP 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + D +    P + R+++D    +F ++      L  + +++   + +  
Sbjct: 239 MSDDVAAKCPEVERVLQDAGPITFPIWLTTHRELHTSRRIRLVYDMLAE 287


>gi|171060007|ref|YP_001792356.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170777452|gb|ACB35591.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 314

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 132/296 (44%), Gaps = 11/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +    V+   GS+T AA++L +S++++S+ I+ LE   G+ L  R  R + LTE G 
Sbjct: 10  WSHMHWLTVLGDLGSYTAAAQRLGVSKAAMSQHIADLERAAGVPLVSRTTRSVRLTEAGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T   + ++E     +++ +  P G LR+   + LG+  +   L +FL  +P+++I
Sbjct: 70  QLADATRGAFEQIERGLAGVKDLATTPRGLLRVTAPVALGRQQIVPRLPDFLRAHPEVRI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L+++ + ++ +  D AIR       +  +   L T      A+P YL+    P    
Sbjct: 130 ELVLNDQVLSLAQEGFDLAIRHTARPPETH-VAWTLTTTRSVLVASPDYLQRRGRPQHPA 188

Query: 185 ELD----KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           EL     +H+ + +          F        P+       L  N+   + +  + G G
Sbjct: 189 ELATERGQHDCLHYPRPGETPTWQFQPRQAALAPVTVAVRGPLSANNSEVLREAAIDGLG 248

Query: 241 IALLPDYIVK---DNPNLVRIMEDVIT-PSFT--VYFCYPEALKNTGKLKAFRNFI 290
           IALLPD+  +    N  L  ++       SF   ++   P +      + A   ++
Sbjct: 249 IALLPDFSAQAALRNGALEAVLPQWKPVGSFGEFLFAIRPYSPYVPRAVHALVAYL 304


>gi|241662829|ref|YP_002981189.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240864856|gb|ACS62517.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 305

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 123/293 (41%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF      GS   AA +  LS +   + +S +E ++  +L +R  R L+LT+
Sbjct: 1   MDRLTSLGVFVAAVEEGSLAAAARRFGLSAAMAGKHVSAIEADLNARLLHRTTRRLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +    +  + E  +S     G LRIA  +  G   L   +  ++  +P+
Sbjct: 61  TGQTYYERCKRILEAFDEARREASDSQGAARGVLRIAAPVTFGAMHLGEVVARYMEDHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++  L ++ +D+     D AIR+ + +++  L  R+L    M   A+P YL+    P 
Sbjct: 121 VTVEAQLGDRYVDLIDAGVDVAIRIGR-LEAPGLATRRLAPCRMVVCASPAYLERHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +EL     + F + +     D+      +R         +  N+   ++   V G+GI
Sbjct: 180 RPEELLSAQRLVFSEAVSAG--DWTLRDHENRAHVIDGPCRMAANNTQMLLAAAVAGAGI 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A  P ++   +     LV ++        T+   YP   +   K++ F +++ 
Sbjct: 238 AYGPTFVFGGHIRRGELVELLPAYRPAELTIQAVYPSTRRIPLKVRRFVDYLV 290


>gi|206563834|ref|YP_002234597.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039874|emb|CAR55849.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 300

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 121/296 (40%), Gaps = 6/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  TE
Sbjct: 4   DLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEAAFGQTLFTRSPSGLLPTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +       +           G +RI+ +  +   +L   L +    +P 
Sbjct: 64  AALALRGHAEALRSAAAAFERAAASHGAGVRGIVRISASDVIAVEVLPPMLAQLRRDHPG 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L+  ++  D+    AD A+R+  P Q + L+ R++  I +  YA   YL +   P 
Sbjct: 124 LVIELVPTDRVQDVLKREADIAVRMAPPAQDA-LVARRVGAIEVGLYARDDYLAHHGAPA 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L  H LI F  + P     F   A    P+ +     L+ +S L+ +     G GI
Sbjct: 183 TTDALAHHALIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 + K +  LVR++ +        +    E L+ + + +A  + +    R +
Sbjct: 238 GFCQTALAKRDARLVRVLPNGPAIRLETWVVMHEDLRASPRCRAVFDALANGLRAY 293


>gi|37523327|ref|NP_926704.1| LysR family transcriptional regulator [Gloeobacter violaceus PCC
           7421]
 gi|35214331|dbj|BAC91699.1| LysR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 304

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 127/295 (43%), Gaps = 10/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F  V R GSF   A    +  S +SR ++ LE ++G++L  R  R L LTE 
Sbjct: 1   METEALRLFVEVTRRGSFAAVARDRRIDPSLVSRAVASLEHDLGVRLLQRTTRRLALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  +L+  +  +   S  P G LR+  ++  GQ  L   L +    +P +
Sbjct: 61  GERYLGRIEPLVDELDRAREAVLVLSTGPIGTLRLTASVAFGQRCLVPLLPQLRSSFPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+L +  +D+  +  D AIRL   +     ++ K    H    A+P YL+       
Sbjct: 121 RLELLLTDAKLDLVGERIDLAIRLGPAVPGDG-VRVKWFDTHYRVCASPAYLQRAHSLRD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H  + F   +P+    + +          P    + +++ L++ +  + G G A
Sbjct: 180 PAELPAHRCLLFA--LPEFRSQWRFRDAEGIVSEVPVDGDIVISNALALRECTLAGMGPA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFI 290
           LL  +++ ++     LV +       +       +  YP       K++   +F+
Sbjct: 238 LLAHWLIDEDIAQGRLVDLFPAYRASATDFETAAWLIYPSWTFLPYKVRVVVDFL 292


>gi|260769020|ref|ZP_05877954.1| putative transcriptional regulator LysR family [Vibrio furnissii
           CIP 102972]
 gi|260617050|gb|EEX42235.1| putative transcriptional regulator LysR family [Vibrio furnissii
           CIP 102972]
 gi|315180759|gb|ADT87673.1| AphB/LysR family protein [Vibrio furnissii NCTC 11218]
          Length = 266

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 126/267 (47%), Gaps = 9/267 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +  ++I+R+I  LE  + ++L  RHAR L+LTE G +     S +  +L +   E+ +  
Sbjct: 2   IPVATITRRIQALEDSLNLRLLNRHARKLSLTEAGERFFSDCSPLLQRLASMAEEITDEC 61

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
              SGK++I++  +L + ++     EF+  YP+I I+L   N    +     D   R+  
Sbjct: 62  RGASGKIKISSPYNLTKRMMMPMFNEFMKQYPEINIELTTSNHADQLDPTEWDVIFRVG- 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P + SSLI RK+  +     A+P YL     P   +EL +H+L+    L+   + +    
Sbjct: 121 PQRDSSLIARKISEVKDILVASPDYLTKHPAPTHAEELSRHSLLKGYPLLKWQLSNSKGE 180

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITP 265
             ++   G       Q N+   +   C  G GI L+PD ++++   + +LVR++ D    
Sbjct: 181 TVINGDKG-----RFQANALNVVRSACSEGLGITLMPDVMLREFIADGSLVRVLSDWSAN 235

Query: 266 SFTVYFCYPEALKNTGKLKAFRNFIFL 292
              +Y  Y        K++ F +F+  
Sbjct: 236 PRDIYMLYNHKDHLPEKVRLFIDFVIA 262


>gi|163792702|ref|ZP_02186679.1| Transcriptional Regulator, LysR family protein [alpha
           proteobacterium BAL199]
 gi|159182407|gb|EDP66916.1| Transcriptional Regulator, LysR family protein [alpha
           proteobacterium BAL199]
          Length = 302

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 126/297 (42%), Gaps = 14/297 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR+F  V  +G+ T A   L +S ++ S+++  LE ++ ++L  R  R ++ TE
Sbjct: 1   MDRLSALRLFIRVVDTGNITSAGRSLGMSSTAASKRLQDLEADLRVRLLDRTTRSVSATE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+   S +   L+    +  +   +P+G LR+      G   +   L  F   YPD
Sbjct: 61  AGRHLYERVSVLLDDLDGALRQAGDMQSRPAGVLRVTARRSFGMLHVLPALPSFRETYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I L L            D  IRL +P++ S L+  +L +      A+P Y      P+
Sbjct: 121 VEIDLTLTEIVEIAPTRGVDLVIRLGEPVEKS-LVAHRLASAERVMCASPAYFAKFPPPV 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              +LD+H  + +     +  E   W+        E  ++  L+ NS  ++    + G G
Sbjct: 180 GPDDLDRHACLGY----RRDFEPSVWVFETASGRKEVTVAGPLRSNSGEALRAALLDGIG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKAFRNFI 290
           +ALLP ++V  +     LVR + D+          +Y  +        K  AF   +
Sbjct: 236 LALLPRWMVAGDLRAGTLVRCLGDIPCYPEGYREEIYAVHARNPMVPAKTLAFVTHL 292


>gi|89069891|ref|ZP_01157225.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89044567|gb|EAR50686.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 305

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 125/298 (41%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+  D +R F  V   G  + AA    +S +  S +IS LE  + ++LF R  R LT T
Sbjct: 1   MSY-LDNVRTFVRVFELGGMSAAARDQRVSPAVASARISQLEGHLRVRLFQRTTRSLTPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +   ++  +  + E++  P G L +A  + LG+ L+  ++  F   YP
Sbjct: 60  EHGHMFYEGACRILASVDAAEAAVIEATENPRGTLYVAAPLGLGRRLIAPHIPAFAEKYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L L ++ ID++ +  D A  L +P   S +  R +        AAP Y+     P
Sbjct: 120 LITVRLRLSDRKIDLTAEGLDIAFFLGRP-ADSDMRIRMIAECPRVLCAAPGYIAARGHP 178

Query: 181 LSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              + L  + H+ +      P   E    L T D P        L+ +    +  + + G
Sbjct: 179 ADGEALVAEGHDCLNL--RFPGAAEFQWELVTPDGPRRFAVRGRLESDDGDVLTDWALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+ + P + V  +     LV++ E        +   +        K + F +F+  +
Sbjct: 237 QGVVMKPAFEVGAHLAAGRLVQVAEATPPVPVQLACLFTHRRHQDPKTRLFMDFMIAR 294


>gi|325917714|ref|ZP_08179904.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325536076|gb|EGD07882.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 299

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 133/290 (45%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+VF  VAR GSFT AA QL +SQS++S  +  LET +GI+L  R  R ++ TE G
Sbjct: 5   NLNDLQVFVTVAREGSFTRAAAQLGVSQSALSHTVRALETRLGIRLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L    +    +++     L +   KP+G +RI T        +   L + L  YPD++
Sbjct: 65  ARLFATVAPRLQEIDDELSALTDFRDKPAGTIRITTAGHAADAYVWPALSKLLPDYPDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ +D    DI  +  D  IRL   +    +         M   A P Y  +   P + 
Sbjct: 125 IEVTVDYGLADIVAERYDIGIRLGDQVAKDMIAVPISPPQRMAVVAVPGYFVHHTIPAAP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN I         +  +       R I          NS  ++++  + G+G+A 
Sbjct: 185 ADLAQHNCIGLRLPTHGGLLAWE-FEQSGREIKVRVDGQWTFNSSGAMLRAALAGAGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP+ +V D+     L R++ED   P    Y  YP   +++  LK   + +
Sbjct: 244 LPESMVLDHIAAGQLRRVLEDWCEPFEGYYAYYPSRRQSSSALKVVIDAL 293


>gi|330816315|ref|YP_004360020.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327368708|gb|AEA60064.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 310

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 129/299 (43%), Gaps = 13/299 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  +  V  +GS   AA  L +S +++S+ ++ LE  +G++L  R  R + LTE G+  +
Sbjct: 9   IHCYIRVVENGSIAAAARALGMSAAAVSQNLARLEAHLGVRLLSRTTRSMALTESGTHYY 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L+         ++ P G L +ATT   G++LL   +  F   YP I ++LI
Sbjct: 69  EKVRHIPRDLD-LAQAAATEALAPRGPLCVATTAAFGRHLLAPLMPAFQAAYPRIAVELI 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ ID  ++  D ++R+   +    L+ R++ +      A+P YL     P + ++L+
Sbjct: 128 STDRRIDHRLEGVDLSLRIAAQL-DERLVARRIASRPFVFCASPAYLARAGVPAAPEDLE 186

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +         +  + ++    R            +    + Q  V G GIA L  +
Sbjct: 187 EHACLALRYPTDGRLLPWGFVRD-GRRFEAAVNPAFICDDIDMLAQIAVSGGGIARLASF 245

Query: 248 IVK---DNPNLVRIMED-------VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + +   D   L+ + E          +    +Y C  E      K++AF +F+  +  +
Sbjct: 246 VAQPLIDAGKLLPLFEARSRSRAWAESEPMEIYACVAERAALNAKVRAFIDFVEAELAE 304


>gi|298292886|ref|YP_003694825.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929397|gb|ADH90206.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 305

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 122/295 (41%), Gaps = 14/295 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  V R+GSF+ AA +  ++ S+I RQI  LE ++G+ LF R  R LTLT+ G +
Sbjct: 7   EYLATFVDVVRAGSFSGAARRRAVTPSAIVRQIDALERDLGVALFIRSTRALTLTDAGQR 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L         +L  T  E+       SG LRIA     G+  +   +      +P + + 
Sbjct: 67  LCERALRHLDELADTHAEVAAFDGSVSGTLRIACFPTFGKRYVLPVVAALQTEHPALHVD 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D   +  D  IR+   +  S+LI  +L  +     A+P YL     P S  +
Sbjct: 127 LDLTERLADPVAERLDAVIRMGA-LADSTLIATRLAPLTRLLVASPAYLSREGTPSSAAD 185

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVLGSGIAL 243
           L  H L+          +   W   +  P G         + + + ++      G GIA+
Sbjct: 186 LSSHRLL----DKLHGADLLGWRDVLGCPAGHAGNGTVAFRSDDFEALRAAAEAGLGIAI 241

Query: 244 LPDYIVKDNPNLVRIM------EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L  ++V  +    ++M      E     S  +Y       + + K++AF   +  
Sbjct: 242 LSSWVVGPDVRAGKLMRLGLGGEPWNDASSGIYLL-RALQQPSAKVRAFAEALRA 295


>gi|262276546|ref|ZP_06054355.1| glycine cleavage system transcriptional activator GcvA [Grimontia
           hollisae CIP 101886]
 gi|262220354|gb|EEY71670.1| glycine cleavage system transcriptional activator GcvA [Grimontia
           hollisae CIP 101886]
          Length = 301

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 123/293 (41%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSLRVFETAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +V+  L      + E      G L I+         L   L +F   +P+I +
Sbjct: 68  SYFLDIKDVFTSLADATDRVLERGA--KGALTISLPPSFAIQWLVPRLADFNQQHPEIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI   +      L   +L    +    +P  L       +++
Sbjct: 126 RIKAVDMEDGSLTDDVDVAIYYGRG-NWPGLRCDELYPEFLLPVCSPEILNGPNPLHNLE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+       +  +D+   A   +            +    ++Q   LG G+AL 
Sbjct: 185 DLKHHTLLH-----DRSRKDWKAYAKHYQISDINLNYGPIFSHSAMVLQAAALGQGVALS 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   ++  LV   E  +      Y    +   ++G++ AFR+++  KA
Sbjct: 240 NNVLAQPELESGRLVCPFEHFLMSKNAFYLVSQQKDADSGRIAAFRDWVLAKA 292


>gi|299068666|emb|CBJ39903.1| transcriptional regulator of glycine cleavage system operon, LysR
           family [Ralstonia solanacearum CMR15]
          Length = 304

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 120/298 (40%), Gaps = 11/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH---ARGLTLTE 61
            + LR F    R  SF+ AA +L+++ +++ + +  LE  +G  LF+R       L  TE
Sbjct: 7   LNALRAFEASTRHQSFSAAAAELNVTPAAVGQLVRSLEASLGTPLFHRSSGGRARLVPTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + +L      L+E+S   SG L +  +       L   +  F   +PD
Sbjct: 67  AAERALPDIRAGFDRLSLGLARLKEASA--SGVLTVTVSPAFAAKWLLPRIDRFQAAWPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L  + K +D      D  +R         L+  KL+   ++   +P  L+  R   
Sbjct: 125 TDVRLDTNLKPVDFIAQGVDIGVRYGAG-NWPGLVAEKLMGEEIYPVCSPGLLRQRRRLR 183

Query: 182 SIQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +L K  LI             +N                +++N+  +++Q  + G G
Sbjct: 184 NPADLAKETLIHDLSVDGHDGFASWNVWLEKAGVTTVTTQRGMRINNSAAVLQAAIDGHG 243

Query: 241 IALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +AL    + +D+     L+R+  ++  T +   Y  Y        KL AFR+++  +A
Sbjct: 244 VALARSVMARDDLAAGRLIRLFPEIEFTSALAYYVVYRAECAGLPKLAAFRDWLVSEA 301


>gi|254562710|ref|YP_003069805.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254269988|emb|CAX25970.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens DM4]
          Length = 307

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 124/294 (42%), Gaps = 10/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA+  SF+ AA  L +  SS+SR+IS  E  VG++L  R  R L LT  G 
Sbjct: 7   LRDMALFVEVAKQKSFSKAAATLGMPISSLSRRISDFEQMVGLRLLDRTTRKLALTSYGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGNLKEFLLLYPDIQ 123
                 S +  + +     L   +  PSG LRI    D    + L   + EF  L+  I 
Sbjct: 67  AYLAQASRLVEEAQQAFDNLVAEAKGPSGFLRIVAPPDFWVLHHLSRIVTEFSELHEHIH 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L    ID+  D  D A+ + +P ++S LI RK+  +    +A+P YL++C  P   
Sbjct: 127 VHVDLKPSAIDLVGDNYDLAVTIEEPRETS-LIMRKVAEVRNGLFASPAYLRDCGWPKEP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H+ I               L+  D  +       L  NS     ++ + G GI  
Sbjct: 186 QDLRDHSAIVPTQGARTMWS----LSRDDETVPVLVNGPLSCNSPSLARKFALAGQGIFS 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                V+    +  L +++ +   P   VY      L    K ++F +F   + 
Sbjct: 242 THHLSVERDVVDGRLEQVLPEWDLPPTPVYIVTTSRL-LPAKARSFIDFAMKQL 294


>gi|238751190|ref|ZP_04612685.1| Transcriptional regulator, LysR family [Yersinia rohdei ATCC 43380]
 gi|238710668|gb|EEQ02891.1| Transcriptional regulator, LysR family [Yersinia rohdei ATCC 43380]
          Length = 319

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F  +  +GS + AA +L  SQ ++SR++  LE  +G+KL  R    + LT+ G 
Sbjct: 12  IELMQTFIRIVEAGSLSGAAARLGTSQPTVSRRLQTLERLLGLKLLQRTTHIMKLTDDGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +       + +L+ ++ +P G LR+      GQ+ L   LK++L  YP++ +
Sbjct: 72  RCYSHAKALVENWNAMEDDLRGATDQPRGLLRVLVPHAFGQDQLIKPLKDYLYRYPEMSV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  L+++  D   +  DCAI++   +   S++   L  +     AAP  L N   P   +
Sbjct: 132 EWTLNDRRPDFIAEGIDCAIQVGA-VTDPSVVAILLAEVPRIVVAAPELLNNKPLPTHPE 190

Query: 185 ELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L   + I        + +        + R   +P+   L  +S  ++    + G G  +
Sbjct: 191 QLLDFHWIALNSFYRNEVVLSHKTQGEIQRISIKPQ---LSTDSLYALRNAALAGLGAGI 247

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              +++ D+     LV +  D       +Y  YP A     +L+AF + I  +A
Sbjct: 248 ASTWVISDDLAQGRLVHLAPDWHGLPLPIYLVYPHASFYPARLRAFLD-IMRQA 300


>gi|238896218|ref|YP_002920954.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548536|dbj|BAH64887.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 302

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 132/295 (44%), Gaps = 5/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  +GSFT AA  L  +++ +S  +  LE E+G+ L  R  R L LT+ 
Sbjct: 9   LNLQRVTMFIAVVDAGSFTLAAAALGQTKAVVSFNVRQLENELGVTLLLRSTRRLRLTDA 68

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  E  Q E++ S    SG+LRI TT + G  ++   L  F   +P +
Sbjct: 69  GVLFYQRGVALLNAAENLQDEVRASHSGLSGELRITTTPEYGAQVIIPALAAFARRHPAL 128

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ +  +   D+  +  D AIRL   +  S     ++ +  +   A+P +L +     +
Sbjct: 129 RVRHVSSSHHADLISERFDVAIRLG-TLADSRYRATRIASFAILPVASPAWLASHPV-QT 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +   I    L              +             +S  ++M + + G G+A
Sbjct: 187 LSDLAQAEWIIHERLPTPLRWQLRTDHQTEVDFAIASAPRFSADSATALMSFALAGCGVA 246

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP ++V        LV ++ +   P   VY  YP++     +++AF +F+  K 
Sbjct: 247 LLPAWLVAKKVAQRELVPLLPEYHFPQQGVYALYPDSQHLPTRVRAFIDFLREKV 301


>gi|83646067|ref|YP_434502.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634110|gb|ABC30077.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 301

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 132/301 (43%), Gaps = 8/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA+  SF+ A+E L LS  + SR ++ LE  +G+KLF R  R + LTE
Sbjct: 1   MDKLQTMQVFIEVAKQQSFSLASEVLGLSAPAASRAVAALEERLGVKLFNRTTRLVRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++  +    +   LE  +     +  KP+G L +   +  G+  +   + ++L  +P 
Sbjct: 61  SGARFLQDAKRILEDLEEAEAAAAGTYAKPTGTLVVTAPVLFGETYIMPIVTDYLAKHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++IL ++  ++  +  D AIR+ + ++ SSL    +  +      +P Y K    P 
Sbjct: 121 VSVKIILLDRVANLLEEDFDVAIRIGR-LKDSSLYATTVGHVKKIICGSPEYFKRYGYPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H++I            F      +     PR   L+ N   +  +  +LG G+
Sbjct: 180 KPEDLINHSVIFPAPFEYTNGWHFQINGNKELVRLTPR---LRCNHNGAARKAALLGHGL 236

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
             L  Y   ++     L R++ +       V   + E  +   K + F +    K R+  
Sbjct: 237 TTLMSYQAAEDLKANRLQRVLTEFEEEPLPVNIIHLEGRRANAKTRCFIDLAAKKLRENP 296

Query: 299 F 299
           F
Sbjct: 297 F 297


>gi|293611420|ref|ZP_06693716.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826292|gb|EFF84661.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 297

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 121/294 (41%), Gaps = 11/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF  +A+ G+ T AAE L+ S++ +SR +  LE     +LF R+ R ++LT 
Sbjct: 1   MDTLKAIHVFVSIAQHGNLTKAAEHLNYSRAMVSRYLEHLEHTFSTRLFQRNTRKISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K       +  + +  Q     +  + +G +R    + L Q  +   +++F   +P 
Sbjct: 61  AGEKALLYCENILQQQQLLQEL--AAPEQHNGTIRFTCGLFLFQLGVGECIRQFKQQHPH 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ  + L    +D+     D A+R+ + +    LI R +  I     A P YLK      
Sbjct: 119 IQFDVYLTENTMDLIDAQVDLALRITQKVAD-GLIARPVCQIESVFCAHPDYLKQHSPLS 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  +          + +    T  +P   P     + N   ++   CV   G+
Sbjct: 178 HPRQLIQHECLAHHS----QHQFWTLFDTEQQPQNYPLNVTFKSNDVNAVYDMCVHAQGV 233

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP  +VK +     LV + ++   P  ++   Y          + F  F+  
Sbjct: 234 AMLPTLLVKKDLKEKRLVPLFKNFSAPELSLSVVYASRQHLPKITQEFIAFMIE 287


>gi|239820772|ref|YP_002947957.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805625|gb|ACS22691.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 316

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 131/302 (43%), Gaps = 11/302 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +  F  VA++ SF  AA QL +S+S ++ ++  LE  VG  LF+R  R + L++
Sbjct: 1   MDRLENIETFVRVAQTQSFAEAARQLRVSKSVVTSRVKQLEDHVGAPLFHRSTRVVRLSD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R   E+  +      +++++   P+G LR+              L+ F   +PD
Sbjct: 61  VGQAFLRDCVELVGRANDIMDQMRDAKDGPTGTLRVHALTGFVLGHFATLLRAFQSSFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LI+ +  +D      DCA+++  P  S+ L+ R L  +     A P YL+    P 
Sbjct: 121 IHLELIVSDAVVDPVKAGVDCALQIF-PAASTELVSRSLFPVRRVFCATPEYLRAHGRPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S +EL KH L  +     +    F+        +     + L  NS   + +Y +  +GI
Sbjct: 180 SPRELHKHTLGLYSGYPTRDRWTFH---HGGEQVTMYMSAALLTNSVHLLREYAMEHAGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLKAR 295
             LP  +  +      L  ++      SF++   Y    +N  KL+ F   +   F K  
Sbjct: 237 VCLPTLVAGEAILRGELEVVLPAHQLSSFSLSAVYAGTSRNAFKLRLFIEHLTHAFSKVP 296

Query: 296 DW 297
            W
Sbjct: 297 PW 298


>gi|148559387|ref|YP_001259011.1| LysR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148370644|gb|ABQ60623.1| transcriptional regulator, LysR family [Brucella ovis ATCC 25840]
          Length = 310

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 121/293 (41%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  SF+ AA++L L+Q ++SRQ++ LE ++G  LF R +R + L+E G   
Sbjct: 14  ALAAFDAVARHESFSAAADELSLTQGAVSRQVASLEEQLGAALFDRTSRNVVLSEAGRVY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        +    +++          L +A     G   L   +  F+  YP I +  
Sbjct: 74  LQAIGPALASIRAASLQVMSQMRGT--TLNLAFLPTFGTRWLIPRIPRFVAQYPHIILNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   +  D AI + +P    +     L+   +    +P +LK+     S  +L
Sbjct: 132 ATRIGQFDFDREGLDAAIHIGQP-DWPNAECTFLMDETVAPVCSPAFLKDHPV-TSPHDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L             F  L      I  P    ++   + ++ Q CV G G+ L+P 
Sbjct: 190 LRLPLFNIASRPGAWEHWFRSLG-----ITTPVPGGMRFEQFSNVSQACVAGLGMGLMPL 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 245 FLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEVRN 297


>gi|330943417|gb|EGH45770.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 275

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 116/271 (42%), Gaps = 11/271 (4%)

Query: 28  HLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQES 87
            LS  +ISR+++ LE ++G++L +R  R ++LT +G         + H  ET +  L+  
Sbjct: 1   GLSPMAISRRLAALENDLGVRLVHRTTRSVSLTPEGEVFLPHAKTMLHASETARATLKAD 60

Query: 88  SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLR 147
           +   SG LR+      GQ ++   L   +   P + I L L +  +DI+    D AIR+ 
Sbjct: 61  AGTASGVLRVTAPSVFGQTVIMPLLPALMQENPALSIDLTLSDSIVDIAGLGIDVAIRIA 120

Query: 148 KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNW 207
             I+ S+L+ R L        A+P YL    +P  + EL +H  IT   +          
Sbjct: 121 -TIRDSALVARSLAPNPRVVCASPDYLARHGQPSILDELRQHPCITLHAMPYWP------ 173

Query: 208 LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVRIM----EDVI 263
                 P+          NS  ++   C  G G+A+L  + V+       ++    EDVI
Sbjct: 174 FIREGEPVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYWDVQQEIREGSLLQITFEDVI 233

Query: 264 TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               +V    P   +   +++ F + +  + 
Sbjct: 234 PEQLSVTAVLPTRQRVPHRVRLFVDRLEAEL 264


>gi|162662269|gb|EDQ49166.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 369

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 4/239 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F   A +GSF  AAE+L L++S++ + ++ LE  +G +LF R  R L LTE G   +  
Sbjct: 14  AFVASAEAGSFAQAAERLGLTRSAVGKAVARLEEHLGARLFVRTTRSLGLTEDGQMFYER 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
            ++    L+  +  L+    +  G+LRI+  +  G++ +   L E   L+P ++I+    
Sbjct: 74  CAQALEDLDAARHMLEAGRREVVGRLRISAPVVFGRHHVAPLLLELAQLHPRLRIEASFT 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           ++ +D + D  D AIR  +   S  L+ R+L    M   A+P YL+    P S+ +L  H
Sbjct: 134 DRQLDFADDGIDLAIRSGELPDSDWLVARRLGMQTMVLCASPAYLQAHGAPRSVADLAGH 193

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDY 247
             I +            WLA  D  +  P +   L  +   +I    + G+G+A +P +
Sbjct: 194 RCIAYMRSGRAAPW---WLAGEDGSLAAPVLEPALGFDDIETIATATLQGAGLAHMPLW 249


>gi|152999499|ref|YP_001365180.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151364117|gb|ABS07117.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 315

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 7/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F+ +  SGSFT AA +L  S S +S+QI  LE E+ + L  R  R L LT+ G + 
Sbjct: 8   QMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVLTDAGQQF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R   +V+   +     + ++    SG +R+ ++   G   +   L+     YP+++ +L
Sbjct: 68  ARYCEQVFEATQNADAMMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKYPELRFEL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+  +  D  I   + +     I + L   +    A+P YL     P   +EL
Sbjct: 128 SLFDHKADMLEEGLDLWITNHEQLN-EGYIAQHLAETNFVVVASPDYLLKHGIPHHPREL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN + +              A  D           +V+   ++    + G GI  +  
Sbjct: 187 AQHNCVIYQSKSRNYDRWS--FAKDDIEQTVNVAGNYRVDLAEAVRNAVIAGRGIGYVAT 244

Query: 247 YIVK---DNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRN 288
           Y++     +  L++++ D        VY  YP       K K    
Sbjct: 245 YLLSYEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIE 290


>gi|315126855|ref|YP_004068858.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315015369|gb|ADT68707.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 323

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 123/290 (42%), Gaps = 6/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   D L++   VA   S T AA +L +  ++ S  I  +E+ +G +LF R  R L L+ 
Sbjct: 10  NMQIDDLKLILKVAECRSITLAAAKLDMRTATASAAIKRVESALGCELFIRTTRHLRLSS 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +      +    LET +  L+       G+LR+AT+ DLG+NL+   + + +  YP 
Sbjct: 70  AGERYIPQCEQALAVLETARQNLKGEHDAIEGELRVATSSDLGRNLVIPWIDDIMDRYPS 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++  + + +ID   D  D A+R   P   SS+   K+  +     A P YL    EP 
Sbjct: 130 VSLRTHISDSNIDFFRDSVDIALRYGSP-SDSSVYGFKICNVPRLLCATPTYLAKYGEPE 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H+ + +   +   + +        +            N    + ++CV   G+
Sbjct: 189 HPDDLAQHHGLFY--QLQDIINNVWEFTDGQKKYKVKMQGRRASNDGDLVRRWCVADKGL 246

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           A+     + D+     +V +M +       ++   P     T  ++  R+
Sbjct: 247 AVKSALDIADDLLNKRVVTVMPNYQHTQGELWLICPSRQSITPAVRLLRD 296


>gi|238894502|ref|YP_002919236.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|330015034|ref|ZP_08308064.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|238546818|dbj|BAH63169.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328532122|gb|EGF58927.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 315

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 118/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  ++ +  ++ + GSF  AA+ L+LS  +++  I+ LE ++G++L  R  R L+LT  G
Sbjct: 6   DLQQIEILILIVKHGSFRQAAKALNLSPPALTVAINHLEEKLGVRLLNRSTRSLSLTAVG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     + V +        L    + P G +++     +     Q     F    P++ 
Sbjct: 66  EEFLNNITPVVNDYRRVVDSLNYHRLTPEGVVKVNLPRIVIDLFFQDYFIAFKNACPNVT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLS 182
           ++L   ++ ++I     D  IR  + +    +I       + +   A+P Y++   EP +
Sbjct: 126 LELYATDRKVNIIESGFDAGIRYSQDVPKE-MIAIPFGEKLSLIPVASPDYIREAGEPDT 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q L     I            + ++              L V++  +++Q    G GIA
Sbjct: 185 PQSLVNFRCIN-RCFPGGEKYRWEFIGPSGELSEVAVKGDLVVDADSAMIQAAESGLGIA 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +   +V       +LV ++ D   P+      YP        L+AF  ++  +
Sbjct: 244 FVYQSLVTQQLSAGSLVHLLPDYRYPADHFCVYYPSRKHIPAPLRAFIAWVMAQ 297


>gi|115372290|ref|ZP_01459600.1| regulatory protein, LysR:LysR, substrate-binding [Stigmatella
           aurantiaca DW4/3-1]
 gi|310817295|ref|YP_003949653.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370755|gb|EAU69680.1| regulatory protein, LysR:LysR, substrate-binding [Stigmatella
           aurantiaca DW4/3-1]
 gi|309390367|gb|ADO67826.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
          Length = 302

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 124/301 (41%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D D L+ F  VAR+  F   A     S S++S  +  LE ++G++LF+R  R + LT
Sbjct: 1   MKADLDDLKAFVAVARARGFREGARVNGGSASALSEAVRRLEAQLGVRLFHRTTRSVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      V  +LE     +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGQGLLERLGPVLAELEAALDVVNGFRDRPAGALRLNVPVSAARLVLPRIVPPFLASYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI++++I ++  +D+     D  IR  + ++   +I   +          A+P YL    
Sbjct: 121 DIRLEIITEDSFVDVLASGCDAGIRYDERLEQD-MIAVPIGPRVQRFSTAASPAYLGRHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--NSYLSIMQYCV 236
            P   +EL  H  +         M  + +    +    +P    +     +    ++  +
Sbjct: 180 RPKHPRELLGHTCLR-SRFSSGAMPPWEYERNGEVVQVDPVGPLIVSAGGASDLAIEAAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GSGI    +  ++   D+  L  I++         +  YP        L+AF +FI   
Sbjct: 239 SGSGIVYHFEDWLRPHLDSGALEPILKPWWQNFSGPFLYYPGRRLVPAPLRAFIDFIKTS 298

Query: 294 A 294
           A
Sbjct: 299 A 299


>gi|13471829|ref|NP_103396.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022573|dbj|BAB49182.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 297

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 8/278 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
            SFT AA ++    + +SR++  LE  +G++L +R  R ++LTE G++       +   +
Sbjct: 11  RSFTRAAVRVGRDATILSRRLQSLEERLGVRLLHRTTRSVSLTEAGAEFLVRVRAILASV 70

Query: 78  ETTQIELQESSV-KPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136
           +  +      +   P G LR+A     G+  +   L +FL  +PDI+I+    N+  D+ 
Sbjct: 71  DEAEAAASAHADGSPRGLLRLALPGTFGRMWIGPLLPQFLAEFPDIRIEAEFSNRFADLV 130

Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGD 196
            +  D A+RL   ++ S L+ RK+ T      AAP YL     P + Q L +H+ + F  
Sbjct: 131 AENFDVAVRLGA-LEDSRLVARKVATRRRLLCAAPAYLARRGRPDTPQALLEHSCLGFSG 189

Query: 197 LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NP 253
              +    +       R         L  +    +++  V G G+ +  D+++     + 
Sbjct: 190 F--QTFPAWEMTDREGRRARVEVSGPLVSDDAEVLVEAAVQGLGLMMSTDWLIGRELADG 247

Query: 254 NLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LV ++E+  +     VY   P A     K +AF ++I
Sbjct: 248 RLVPVLEEWTLADEGAVYVVLPSAKGQAAKTRAFADWI 285


>gi|288935837|ref|YP_003439896.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890546|gb|ADC58864.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 304

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 11/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D L +F  +   GSF+ AA  L  S+   +  I  LE  +G +L  R  R +  T 
Sbjct: 1   MDKLDTLTLFVRIVERGSFSAAAADLGFSRPVATAAIKALEASLGARLLQRTTRHVRPTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS  ++    +   LE      + +    +G +R+    +L + LL   L +FL  YP 
Sbjct: 61  EGSLYYQRCVAILAALEEA---NRSAGGSIAGIIRVDVAGNLARTLLLPALPQFLARYPA 117

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +Q+    +D+D+  +  DC IR    +  S +I R L  +     A+P YL     P 
Sbjct: 118 MTLQIGESERDVDLVREGVDCVIR-GGHLPDSEMICRPLARLQEITCASPAYLVRYGTPH 176

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           +I+ L  H +I F  +  +         T D    E  + C L  +      +   LG  
Sbjct: 177 TIEGLTGHVMIGF--VSSRTQRTLPLSFTQDGRQSEVSLPCRLLTSDADVGAEAARLGFD 234

Query: 241 I--ALLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  A LP       +  L  ++ D       +   YP   + + +++ F +++  
Sbjct: 235 LYQAPLPRLEADLASGALTEVLADFRPAPLPLSLLYPSNRQLSARVQVFIDWVTA 289


>gi|296115481|ref|ZP_06834114.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977964|gb|EFG84709.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 297

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR  SFT AA +L +S+S++S  I  LE  +G++L  R  R + LTE G
Sbjct: 5   NTNDLLAFMAVARERSFTRAAAKLGVSRSALSHTIRNLEERLGLRLLARTTRSVGLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L    +  + ++E   + +     +P+G +RI  T      +L   + E L  YPDI+
Sbjct: 65  ARLLDTIAPRFDEIEAELVAMSSLRTRPAGTIRITATEHPTYTVLWPRVSELLRQYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++++D    DI  +  D  +R+ + I    ++      +      +P Y+     P + 
Sbjct: 125 IEIVVDYGLRDIVAERFDAGVRVGESIARDMIVVPISPALRSAVVCSPAYVARHGVPATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM-QYCVLGSGIA 242
           Q+L  H  I     +P     F W           R+    V + L++     + G G+A
Sbjct: 185 QDLTTHACINM--RLPTHDTIFEWEFEKQGRSLNMRVDGPAVVNTLALRLNAALDGVGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +P+       +   LVRI+ED   P    +  YP   + T         +  +A
Sbjct: 243 YMPEDYAMPHIEAGRLVRILEDWCDPYPGYHLFYPSRRQMTPAFALLVEALRYRA 297


>gi|119899282|ref|YP_934495.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119671695|emb|CAL95608.1| probable transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 301

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 124/294 (42%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +  V  +G F  A   L L +S +SR+I+ LE  +G++L  R  R  ++TE G
Sbjct: 3   DLNDLYYYVRVVDNGGFAAAGRALGLPKSKLSRRIALLEERLGVRLIQRSTRHFSVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  +  ++ +  +P G +R++  I +    +   L EFL  +P ++
Sbjct: 63  QTYYEHCRAMLVEAEAAREAIERTRAEPRGVVRMSCPIAILHAHVGRMLAEFLAAHPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +    +  D A+R+R  P+  S L+ R L        A+P  +     P +
Sbjct: 123 LHLEATNRRVSPLNEGFDLALRVRPPPLADSDLVLRVLSDRSQCLVASPALIGALGAPAA 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +LD++  +  G   P+    +                 L  +  +++ +  + G G+ 
Sbjct: 183 PADLDRYPSLALGP--PQDDHLWTLYGPDAAQATLHHRPRLITSDMVALKRAALAGVGVV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V D     +LVR++         ++  YP        ++A  + +   
Sbjct: 241 QLPTLMVCDELAAGSLVRLLPQWAPRREIIHVVYPSRRGLLPAVRALIDHLAAA 294


>gi|16263952|ref|NP_436744.1| putative transcriptional regulator protein [Sinorhizobium meliloti
           1021]
 gi|12007637|gb|AAG42545.1| GstR-type transcriptional regulator [Sinorhizobium meliloti]
 gi|15140076|emb|CAC48604.1| putative transcriptional regulator protein [Sinorhizobium meliloti
           1021]
          Length = 310

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 136/302 (45%), Gaps = 15/302 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++VF      GS   AA +L  S +++SR +S LE  VG++L +R  R L L+E
Sbjct: 1   MDRIDAMKVFVAAIDEGSLAGAARRLKRSPTAVSRALSFLEAHVGVELLHRTTRTLKLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V   LE   +        P G L I++   LG+ +L+  L +FL LYP 
Sbjct: 61  AGQRYAAACRRVLTDLEEADMLAGGERSAPRGMLTISSPPILGEEILRPILDDFLDLYPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREP 180
           + ++L+L ++ +++  +  D A+R+ + +  SSLI  +L   +     A+P YL N    
Sbjct: 121 VSVRLLLLDRFVNLVDEGVDIALRIGQ-LADSSLISTRLGGDVRRVVVASPRYLANHPRI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCV 236
               +LDKH ++ F +   +      W  T  +    PR         VNS  +      
Sbjct: 180 EEPADLDKHQILAFTNFGLES-----WSFTPAKGSSVPRTIQFTPRCIVNSVRAAAASAA 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+  L  Y V +   +  L  ++ D   P    +   P+   +  K++AF +F   +
Sbjct: 235 AGRGLTRLYSYHVAEYVRDGRLEIVLADAEHPPLPAHLIAPQGRMSVPKVRAFVDFAAPR 294

Query: 294 AR 295
            R
Sbjct: 295 LR 296


>gi|161521562|ref|YP_001584989.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345612|gb|ABX18697.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 358

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 129/290 (44%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R+F  +    SFT AA  L +S+++ +R +  LE  +G+ L  R  R L  T +G 
Sbjct: 32  IRAMRIFARIVEMNSFTRAALSLGISRATATRTVQELEAALGMPLLVRTTRALRTTPEGD 91

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    +   ++  +  ++ ++  PSG  R+     +   ++   L  F   +PD+ +
Sbjct: 92  AYYRRCLRITADVDELEASIRRAARHPSGPQRVDLPGPVASAIVLPALGTFHARHPDLVL 151

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +  +  D+  D  DC++RL + +  SS + R L  +     A+P YL  C  P ++ 
Sbjct: 152 MLGVSVRAADMVGDAVDCSVRLGE-LPDSSFVARPLGALERVTCASPAYLDRCGVPRTLD 210

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243
           +LD H  +       +   + +++  VD  + + R+  +  V+   + +   V G G+  
Sbjct: 211 DLDSHRAVGSTSGSGQRAAECDFM--VDGAVRKIRLDVIVGVDDEHAYLACGVHGLGLIQ 268

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P  + +   D   L  ++      +  V   Y +    +  ++AF ++I
Sbjct: 269 PPRAVAQPLIDAGLLRDVLPQWQPAAVPVSAVYVKRPHVSPGVRAFVDWI 318


>gi|115358237|ref|YP_775375.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115283525|gb|ABI89041.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 293

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 134/291 (46%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR+G+   AA QL++ Q+++ R+I+ LE E+  +LF R      LT  
Sbjct: 1   MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPALYVLTTA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +     T +  +     + +G +RIATT  LG+  +   +      +  I
Sbjct: 61  GEALLEPAETMERASLTIERRVMGLDEQLAGTVRIATTDSLGKRFVIPAIARLRRRHAGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  +   +  +++   AD AIR  +P +S  LI R+L  +    YA+ HYL    EP++
Sbjct: 121 DVVCVTSTEIANLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRHYLAERGEPVA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D H+L+ +   +   M    W A    P    R+   Q +S + +++  + G GIA
Sbjct: 180 GSAFDGHDLVMYQQPVMPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEAALAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP +  +  P LVR+M       F V+      L  T +++A    +  +
Sbjct: 235 ELPCFRAEAEPELVRLMARRCN-HFDVWLVAHADLYKTARVQAVIEAVVEE 284


>gi|78065057|ref|YP_367826.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965802|gb|ABB07182.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 306

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 126/293 (43%), Gaps = 17/293 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F  V    SF+ AA +L ++ SS++R+I  LET++GI+L +R    L  TE G  L
Sbjct: 8   HLALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +   + +  +L   Q +L     +PSG LR+      G+  L   L  F+  +P +Q+ L
Sbjct: 68  YGRATRMLAELRGLQEDLHSQHAEPSGLLRVDCPAPFGRRHLMAALAAFMQRHPALQVDL 127

Query: 127 ILDNKDIDISMDY----ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +L +  +D+         D A+R+  P++ +  +   L        A+  YL    EP S
Sbjct: 128 VLTDSMVDLQGARLGSDVDLAVRIG-PLEDTRFVATVLAPQRRVLCASAAYLARRGEPES 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  H+ + +    P     F     V      P     + N   ++++  + G G+A
Sbjct: 187 PDALAGHDCLAWHGAPPPGAWRFGERRHV------PAQPRFRSNHSEALLEAAIDGLGLA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP ++  D   +  L  ++ +        T++    +A   T +      F+
Sbjct: 241 HLPTWLAGDALRDGRLRAVLPEFAAAPEPATIHVLRQQAR-GTARASRLVAFL 292


>gi|294626800|ref|ZP_06705393.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598916|gb|EFF43060.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 300

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 123/297 (41%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     +  F  VAR+G F  AA+   +S S+ S  I  +E  +G++LF R  R + LT
Sbjct: 1   MSGHLADMEAFVRVARAGGFREAAKSAGVSASTYSDAIKRMEASLGVRLFNRTTRSVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ L    +    +LE  +  +      P+G LR+   +   + +L   L  F+  YP
Sbjct: 61  DAGNALLARIAPALLELENAREVVSAFRDTPTGTLRLNVPVSAARLVLPRILPAFMAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI ++++ +   +D+     D  IR  + +Q   ++   +      +   AAP YL    
Sbjct: 121 DITLEILTEESFVDVIAARCDAGIRYGERLQQD-MVAIPIGPRVQRIATAAAPGYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCV 236
            P   ++L  H+ I  G      + ++ +    +     P+   L          +Q  +
Sbjct: 180 RPTHPRQLVAHDCIR-GRFPSGVIAEWEFERDGEVVTIVPQGQLLVEIGGGIELAIQAAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GSGI  L +  ++   D   L  I+     P    Y  YP        L+AF  F+
Sbjct: 239 AGSGILHLFEQWLQPQFDAGALEPILRPWWQPFQGPYLYYPNRTLTPPALRAFIEFV 295


>gi|332524392|ref|ZP_08400607.1| LysR family regulatory helix-turn-helix protein 18 [Rubrivivax
           benzoatilyticus JA2]
 gi|332107716|gb|EGJ08940.1| LysR family regulatory helix-turn-helix protein 18 [Rubrivivax
           benzoatilyticus JA2]
          Length = 303

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 137/292 (46%), Gaps = 8/292 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +R +  V  SGSFT AA+QL L ++S+S+Q+  LE ++G++L  R  R +T T 
Sbjct: 1   MDRFEAMRAYVQVVDSGSFTRAAQQLGLHKASVSQQVQQLEAKLGVRLLTRTTRKVTPTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G + H     +  +L+  +  L++ S    G+LR+   + +G+ L    ++ FL  +P 
Sbjct: 61  EGLRFHERARSILQQLDEAETTLRQGSRALQGQLRVDVPVAVGRLLFAQEIRGFLDSHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L   ++ +D+     DCA+R    +  S L+ R +  +     AAP +L+    P 
Sbjct: 121 IDVELGCTDRRVDLVAAGVDCALR-GGELPDSGLVARPVGALRFVLCAAPRHLERHGVPA 179

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + Q L  H  + F      +         T    +  P  + L      + +   + G G
Sbjct: 180 TPQALAAHPQVGFVAGSTGRLRPLRLRRDTASVELELP--ARLVTTDSAAALSAALDGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +  L +++     D+  LVR++      S  +++  P   +   +++AF  +
Sbjct: 238 VVQLAEFVAAPHLDSGALVRVLPGWRCASLPMHWLTPPPRRRPARVQAFLEW 289


>gi|326317484|ref|YP_004235156.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374320|gb|ADX46589.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 340

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 66/305 (21%), Positives = 128/305 (41%), Gaps = 17/305 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F  +  SGS + AA QL  +Q ++SR++  LE  +G++L  R   G+ LTE G 
Sbjct: 14  IELLQTFVRIVDSGSLSAAARQLGTTQPTVSRRLQALERGMGLRLLQRSTHGMKLTEDGE 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+  + +  + +L+ +   P G LR+      GQ+ L   L  FL  YP++ +
Sbjct: 74  RCFTHARELLAQWQAMESDLRGAHDTPRGLLRVQAPHAFGQDQLIAPLAAFLRRYPEVSV 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC-REPLSI 183
           + +L ++  D   +  DCAI++  P++  S++  ++  +     A+P  L+     P   
Sbjct: 134 EWLLHDRQPDFIAEGIDCAIQVG-PVRDPSVVATQVAEVPRIVVASPGLLEAHGGAPPHP 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR------------ISCLQVNSYLSI 231
           Q L     +       + +E          P    +               +  +S  ++
Sbjct: 193 QGLGALPWLALRTYYLREVELHPEAGDASTPTSAAKPDGTAGPQAIAIRPRMATDSLHAL 252

Query: 232 MQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
               + G G AL+  ++V+D+     LV ++         V+  YP       +L+ F  
Sbjct: 253 RNAALAGLGAALVSAWVVQDDLRAGRLVHVVPGWTAAPLPVHLVYPPTRHPPARLRVFLE 312

Query: 289 FIFLK 293
            +   
Sbjct: 313 AMREA 317


>gi|221200749|ref|ZP_03573790.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD2M]
 gi|221206944|ref|ZP_03579955.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD2]
 gi|221173018|gb|EEE05454.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD2]
 gi|221179321|gb|EEE11727.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD2M]
          Length = 297

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 121/289 (41%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L+ F  VAR  SFT AA QL LS+S++S  +  LE  +G++L  R  R ++ TE G
Sbjct: 5   NLSDLQAFVTVARERSFTKAAAQLGLSRSALSHAMLALEARLGVRLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L    +    ++E     L E   KP+G +RI          L   L   L  YPDIQ
Sbjct: 65  TRLLNTVAPRLDEIELELGSLSEMRDKPAGTVRITAHDHAIGTALWPRLLPLLKEYPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+  +D    DI+    D  +RL   +    +  R      +    +P YL     P++ 
Sbjct: 125 IEFTVDYGLTDIAAQRFDAGVRLGDQVDKDMIAVRIAPDQCLAVAGSPEYLAGRSLPVTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
           ++L +H  +     +P     + W    D      R+    V N+   ++Q  + G G+ 
Sbjct: 185 RDLTEHRCVNL--RLPTHGGLYAWEFEKDGEALSVRVQGQTVFNNTFLMVQAALDGMGLT 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             P  I++   ++  LV  ++D        +  YP   +    L     
Sbjct: 243 YAPLDILQPHFESGRLVPALKDWWPVFAGYHLYYPSRRQTAPALALVIE 291


>gi|83648136|ref|YP_436571.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83636179|gb|ABC32146.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 302

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 132/296 (44%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D L  F  +AR G  T AA+QL +++S++S  +S LE    +KL  R +R   LT
Sbjct: 1   MKEQADLLYTFQAIARCGGVTQAAQQLGIAKSTVSGHLSKLEQIYDVKLVQRSSRQFQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G KL   + E+   L  T+  + E + + SG +RI   +  G  +L   L +F  ++P
Sbjct: 61  AAGGKLLEHSLELVQLLTRTRTCMAEFTKQISGVVRITAPLASGNMILPELLHQFRRIHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +  +L + N+ +D+  +  D A R    +  SSLI R+L  I     A+P +L+     
Sbjct: 121 AVTFELTMSNEQLDLLKNNIDVAFRATA-LNDSSLIGRRLGWIRGVMVASPEFLRQNPLG 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +Q L +  +I +     +  E +  +              ++VN   S  Q  + G G
Sbjct: 180 EELQRLSELPVIAY-----RSDEHWRLVNAQGHEREINIRPIVRVNGLESARQLALKGVG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +AL PDYI      +  L+ +  D    +   +  YP  L  +  +K F +F    
Sbjct: 235 VALTPDYIAAPALQSSELIHLFSDWRGRATPYHLVYPSRLTPSIAVKRFIDFTLEA 290


>gi|94498460|ref|ZP_01305017.1| probable transcriptional regulator protein, LysR family protein
           [Sphingomonas sp. SKA58]
 gi|94422108|gb|EAT07152.1| probable transcriptional regulator protein, LysR family protein
           [Sphingomonas sp. SKA58]
          Length = 307

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 118/285 (41%), Gaps = 11/285 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   G    A  +LH+S + +S++++ LE  +G KL +R  R + LT  G +LH  
Sbjct: 8   LFVTVVDEGGLAAAGRRLHISPAMVSKRLARLEDRLGAKLLHRTTRRMALTPAGERLHAD 67

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L+  +  +   S   SG LR+      G+  L   L+ FL  YP + + + L 
Sbjct: 68  LRGILAALDEAERRVSGQSAMVSGPLRVTAPTSFGRMHLAPYLQGFLDAYPKVALTIDLS 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +   D+    AD A+R+        L   +L T      AAP YL     P +I  +  H
Sbjct: 128 DAFADLIEARADLALRITAN-PGRGLSATRLATNRRILCAAPGYLDRHGVPDTIAAIKAH 186

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
            L+     +P        L     P+     S ++ NS   + +  + G GIAL   + V
Sbjct: 187 RLLAADGQMPWR------LVGPRGPVSIEGQSHVRTNSSELVRELTLAGGGIALRSLWDV 240

Query: 250 KD---NPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
            D   +  L +++     +    ++  +         + AF +F+
Sbjct: 241 SDALASGALRQVLPAYAGSADVALFAVHLPQSHPPRAISAFIDFL 285


>gi|260855028|ref|YP_003228919.1| putative DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O26:H11 str. 11368]
 gi|257753677|dbj|BAI25179.1| predicted DNA-binding transcriptional regulator, LYSR-type
           [Escherichia coli O26:H11 str. 11368]
 gi|323153526|gb|EFZ39779.1| transcriptional regulator, LysR family protein [Escherichia coli
           EPECa14]
          Length = 299

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 120/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGHHLYYPHRRHAGSAFSLFIDRL 293


>gi|170727806|ref|YP_001761832.1| DNA-binding transcriptional activator GcvA [Shewanella woodyi ATCC
           51908]
 gi|169813153|gb|ACA87737.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 303

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 113/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNSVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  ++  +   +  +    G L ++T+       L   L +F    PDI +
Sbjct: 68  GYFLDIKDIF--VQLAEATDRLLARSAIGSLTVSTSPSFAIQWLVPRLAKFSEKNPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI   +    + L   KL    +    +P  L   +      
Sbjct: 126 RIKAVDDEDGSLSDDVDVAIYYGQG-NWAGLRADKLKNEVLIPVCSPMLLSGPKPLEKPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+              W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKNHTLLH----DTSRHNWQAWFRQCGINDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +   +     LV    +V+      Y    +   + GK+ AFR ++ 
Sbjct: 240 FSVLATPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHSDIGKIAAFREWML 289


>gi|317053392|ref|YP_004119159.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953131|gb|ADU72603.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 305

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 6/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V    SF  A++ L +  S++SR I+ LE ++ ++L  R  R + LT+
Sbjct: 4   ALDFNALKVFVAVVERESFVGASKVLEMPTSNVSRCIAQLEEKLNLQLIERSTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   YPD
Sbjct: 64  AGHLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSAIADFACQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  + +   ++   D  D AI + R  +  S  I R LVTI     AAP  ++    P
Sbjct: 124 LEISCVTNLSGLESLRDDLDLAIIVTRGQMDDSDYIARHLVTIPCTIVAAPSVIQRYGTP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             IQ+ ++   IT    +      + ++ T             +VNS     +  V G G
Sbjct: 184 SHIQQFEELPCITTVSALKGA--PWQFINTKGGFEIIKVKGHYRVNSGEMAGRAAVAGVG 241

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            A+L     +    +  L+ I  +       ++  Y +      K +A  +F+  + 
Sbjct: 242 FAILSKQACQPYISDGRLIEIAFEQSVAPLQLFALYSDRRYLPAKTRALIDFMHQEL 298


>gi|296115529|ref|ZP_06834159.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977924|gb|EFG84672.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 306

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 125/302 (41%), Gaps = 8/302 (2%)

Query: 1   MSF---DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M     D   L +F  +A++G F   A +L LS S++S  I GLE  +G++LF R  R +
Sbjct: 1   MHLSRGDLGDLNLFCAIAKTGGFRKTAAELDLSPSALSHAIRGLEKRLGVRLFNRTNRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           TLT  G +L    +    ++      L     +P+G+LR+    D  + +L   +  +  
Sbjct: 61  TLTPAGRELLSHVTSGLSEITNGLEALNRFRDRPAGQLRLNVPTDAARLVLAPVIARYAA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           LYPD+++++ +++  +DI     D  +R    I    +       +     A+P YL + 
Sbjct: 121 LYPDVRLEVAVEDAVVDIIEHGFDAGVRYGGTIPEDMIAVPLCPDLRWVTVASPAYLASA 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
                  +L +H  I       K       L   +  +       + VN  +  ++    
Sbjct: 181 PPLRCPTDLHQHRCIGIRMGSGKIYHWE--LERGEEKVFLDTDWSVIVNETVLSIEIAER 238

Query: 238 GSGIA--LLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             GI+  L     V+  N +LV+++ +  +    ++  YP   +    L+A    I  + 
Sbjct: 239 DGGISYNLESRAAVQIANGSLVKVLPEWASMGPPLFIYYPSRRQLPEALRALIRLIQGQK 298

Query: 295 RD 296
            D
Sbjct: 299 PD 300


>gi|331651177|ref|ZP_08352202.1| transcriptional regulator, LysR family [Escherichia coli M718]
 gi|331050918|gb|EGI22970.1| transcriptional regulator, LysR family [Escherichia coli M718]
          Length = 299

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 124/301 (41%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L +F  VA   +F+ AA +L +++S++S+ I  LE   G  L  R  R + LT
Sbjct: 1   MKIDLNLLPIFIAVAEESNFSKAAARLGVTRSAVSQGIRRLEDAFGTMLVMRTTRSVNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +LH+  S     +ET   E+    V P G LRIA      + L    +  F    P
Sbjct: 61  EAGERLHKSLSLPLSGIETAFEEMVSDHV-PRGLLRIAVRSIAEEFLSGPLIASFAAANP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + +++ +++ DI     D  +RL + I+   +             A+P YL     P
Sbjct: 120 AVTLDIVVTDEEFDIVAAGYDAGVRLGEVIEKDMIAVPLTGRQREMVVASPSYLAANSTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  +EL  H  I +          +       R         +  N    +++  + G G
Sbjct: 180 VHPRELVNHKCIGWRQSPDVAPYRWP-FEENGRVFDLAIEPQITTNDLRLMLRLALAGGG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I +      +   ++  LV +++D +      Y  +P+      KL+A  + +    ++W
Sbjct: 239 ITIATQETFRPYIESGKLVSLLDDFLPQFPGFYLYFPQRRNIAPKLRALIDHV----KEW 294

Query: 298 K 298
           +
Sbjct: 295 R 295


>gi|238755474|ref|ZP_04616814.1| Transcriptional regulator [Yersinia ruckeri ATCC 29473]
 gi|238706315|gb|EEP98692.1| Transcriptional regulator [Yersinia ruckeri ATCC 29473]
          Length = 303

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 138/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V  SGS T AA Q + + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKITLEELQAFISVVDSGSITAAAGQRNQTTSGISRALSRLEQKLETTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G        ++   ++  + ++    +KP+G+LRI   +   Q+++   +  F   YP
Sbjct: 61  GEGELFLAHARQIIDAVDDAEEQIALRRLKPAGRLRINAAVPFMQHVIVPMIGGFRACYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIRL   ++ S++  R+L    +   A+P Y++    P
Sbjct: 121 QIDLELNTDDLNIDLLEQRTDIAIRLG-VLRDSTIHARRLGASRLRILASPEYIQRHGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I+EL +H+L+ F            +L      I    +  +  +S  ++    + G G
Sbjct: 180 KTIEELSEHSLLGFTQPESLNQWALPYLPGGGSSI----VPTVAASSGETLRHLALRGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  L D++ +++     LV ++ +    S+  +   Y        ++  F +++  + R
Sbjct: 236 IVELSDFMTREDQLVGRLVEVLVEQTLESWQPINAVYYRNTPLVARITCFLDYLTEQIR 294


>gi|73538858|ref|YP_299225.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72122195|gb|AAZ64381.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 319

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 128/301 (42%), Gaps = 10/301 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LR+F  VA+  SF  AA ++ +S + +S++I+ LE  +G +LF+R  R +++T +G 
Sbjct: 15  LRDLRLFCTVAQRSSFIAAAHEMGISPAHVSKRIAMLEAMLGTRLFHRTTRRVSVTAEGE 74

Query: 65  KLHRVTSEVYHKLE---TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
                  ++   ++           +  +P G LRIA +  LG+  +   L      +P 
Sbjct: 75  NAFAWARKILEDVDGMLEAVGGAGRADSEPRGLLRIAASFRLGRRFVAPVLALLRQQHPG 134

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++ +D+  +  D  IR+ + ++   LI   + +      AAP YL     P 
Sbjct: 135 LEVWLELLDRRVDLIGENFDLDIRIGE-VEEPHLIASHIASGSRVLCAAPAYLARRGTPR 193

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + EL +H+ +   +   +    +         + +     +  N      Q+   G GI
Sbjct: 194 HLAELAQHDCLLHRER-DQAFGVWRLQGPAGMEMVKV-TGPMASNHSDVTRQWAHEGYGI 251

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +   + V D+     L++++     P+  V+        ++ +++    F+  +     
Sbjct: 252 IMASVWDVADSIREGELMQVLPAWQQPA-DVWAVTSARASSSARMRVCIEFLKDRLSQGP 310

Query: 299 F 299
           F
Sbjct: 311 F 311


>gi|116051562|ref|YP_789600.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586783|gb|ABJ12798.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 306

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 123/293 (41%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+VF   + SGS + AA QL +S +  S  +  LE+E+ ++LF R  R L LT +G 
Sbjct: 4   YDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +        LE  +  LQ    + +G L+++   D G+NLL   L EF   YP + +
Sbjct: 64  AFLQHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D AIR   P   SSL+   L         AAP YL    EP   
Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGAP-ADSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN + +   +   + D        R +          +    + ++ + G G+  
Sbjct: 183 DDLREHNCLLY--QLGGRVHDRWAFQRGRRSLTLTVAGDRVCDDADVVRRWALAGKGLVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V ++     L  ++ +    +  +        + T  +   R F+  +
Sbjct: 241 KSWLDVAEDVRAGRLRLLLPEWQGEATPMNLLCTHRAQLTRPVTLLRAFVRER 293


>gi|222083041|ref|YP_002542406.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221727720|gb|ACM30809.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 297

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 142/293 (48%), Gaps = 12/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR F  VA +G  T AA +L +S+S +SR++S LE E+G +L  R  RG +LTE 
Sbjct: 1   MDIEDLRTFVEVADAGGVTSAALRLGVSKSMVSRRLSRLEAELGAQLLARSTRGASLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      + V  +++  +  +  +  + SG+LRIA  +  G       L +  L +P +
Sbjct: 61  GATFRDYAARVSAEIDVARDTILPA-GELSGRLRIAAPLSFGPTHFASVLADMALRHPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QIQ    ++ +D+  +  DCAIR+   +Q S+L+ R++  ++    A+P Y+K    P +
Sbjct: 120 QIQTSYSDRFVDLIGEGFDCAIRVG-TLQDSNLMARRVGPLYGKYVASPAYIKAHGSPET 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  H  +  G    + M+        D+ +        + ++  +++     G GIA
Sbjct: 179 PEELVTHQALMQGMETWQVMDG-------DKILTIRPQGRFKADNGAALVVAAAAGLGIA 231

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD + +   D+  LV +M++   P   +Y   P     + K++     +  
Sbjct: 232 ALPDGLTRDYLDSGTLVTVMKNHPPPPAGIYVVRPPGQHPSRKVRVLTEMLIE 284


>gi|221215840|ref|ZP_03588798.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD1]
 gi|221164305|gb|EED96793.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD1]
          Length = 300

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F  AA     S S +S  +  LET++G++L +R  R +  T
Sbjct: 1   MQADLGDLNAFVAVARAKGFREAARTTGTSASGLSEAVRRLETQLGVRLLHRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L         ++E     +     +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGQRLLARLRPALSEVEAALDVVNSFRERPAGTLKLNVPLSAARLVLPSVVPRFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           +I+++L+++   +DI     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 EIRLELVVEESFVDILEVGCDAGIRYDERLEQD-MIAIPIGPRSQRFATAAAPDYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P    EL  H  +          + +F     V R      +      +   +++    
Sbjct: 180 RPNHPSELLHHACLRGRFASGSMPLWEFERDGEVVRVDPSGPLVVQIGGAVDLVVEAARS 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI  L +  ++   D+  L  ++E    P    Y  YP        L+AF +FI  +
Sbjct: 240 GLGIVHLYEEWLRPHLDSGALEPVLERWWRPFSGPYLYYPGRRLVPAPLRAFIDFIKAE 298


>gi|172064303|ref|YP_001811954.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996820|gb|ACB67738.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 314

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 136/296 (45%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDSGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  + ++      PSG+LR+        +++   +  +   +P
Sbjct: 61  EEGRAFLQDARAIIESVENAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVHGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R++    +   A+P YL+   +P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGNSRLRILASPAYLEAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H L+ F    P+ +  +  L     P        +  +S  ++ Q  + G+G
Sbjct: 180 RKVEDLARHTLLGFTQ--PESLNVWPILGADGEPCRIE--PGIWSSSGETLRQLALEGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  L D++   +     LV+++          +   Y      + ++ +F +++  
Sbjct: 236 VVCLSDFMTAQDREAGRLVQVLARQTLDVEQPINAVYYRNTAISSRIASFVDYMIE 291


>gi|315127035|ref|YP_004069038.1| DNA-binding transcriptional activator GcvA [Pseudoalteromonas sp.
           SM9913]
 gi|315015549|gb|ADT68887.1| DNA-binding transcriptional activator GcvA [Pseudoalteromonas sp.
           SM9913]
          Length = 298

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 128/299 (42%), Gaps = 14/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AAE+L+++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALKAFEAAARHLSFTKAAEELYVTQAAVSHQIKTLEEHLGLKLFLRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +L        G L ++ T       L   L  F  L+P+I +
Sbjct: 68  GYFLDIKEIFTQLIDATEKLLARGA--KGSLTVSLTPSFAIQWLIPRLSLFNELHPEIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D +I   +    S +   KL T ++    +P  L   R      
Sbjct: 126 RIKAQDQDENSLTDDVDISIYYGRG-HWSGVQAYKLHTEYLVPLCSPLLLNGPRALNQPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   D   K  +   W+ T      +     +  +    ++Q  V G G+A+ 
Sbjct: 185 DLANHTLLH--DTTRKNWK--TWMKTAGVRNVQVNQGPI-FSHSSMVLQAAVHGQGVAIG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKARDW 297
              + K   D   LV      +      Y    E+    GK+ +F+++   +  + +++
Sbjct: 240 NSVLAKPDIDAGRLVIPFNHSLESKNAYYLVIRESQNELGKIVSFKDWMLSLVEQEQEY 298


>gi|298291731|ref|YP_003693670.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928242|gb|ADH89051.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 297

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 126/297 (42%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  VA  GS T AA  L  S  SI+R ++ LE  VG++L  R  R   LT+
Sbjct: 1   MDRLDDIEAFLAVAEKGSQTAAARHLRRSLQSINRSLAALERSVGVELVRRTTRHSHLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +        ++   ++E  ++  +PSG LRIA  +      +   +  F+  +P 
Sbjct: 61  AGRAFYERVKPALAEINDARLEAAKARGEPSGLLRIAAPVFFAPAYVVPAIAAFMERHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L + ++ +++  D  D A+R+R+ +  SSL+ R+L  + + A+ +P Y      P 
Sbjct: 121 VEIELKVSDRMVNLLEDGIDVAVRIRE-MADSSLMTRRLGELRVVAFGSPDYFARHGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +            F           + R      +S  +       G GI
Sbjct: 180 HPDDLVRHECVLRHAEGRSDSWTFRVGGRRRAVRVQGRFG---SDSAAATHAAVAAGLGI 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L P + ++   D   +  I+ED       ++  +P       K + F + +  + +
Sbjct: 237 GLTPLWQIRGLVDAGAVEVILEDFEDARIPIHAVWPAGKIPLAKTRLFVDELAARLK 293


>gi|260778786|ref|ZP_05887678.1| hypothetical transcriptional regulator [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604950|gb|EEX31245.1| hypothetical transcriptional regulator [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 307

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 133/293 (45%), Gaps = 10/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ ++L +   V+ SGSF  AAE+LH+ +S +S+QI  LE  +G++L  R  R L LT 
Sbjct: 1   MDFANRLEMLLEVSESGSFAKAAERLHMDRSVLSKQIKKLEETLGVRLLNRSTRSLALTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +     +V   L  T+        +P G LRI++    G+  LQ  +++F+  YP 
Sbjct: 61  AGQDIVHQARKVRELLADTRNIADTYHNEPKGHLRISSATVFGRMYLQPAIEKFMAKYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+LILD++ +D+  +  D   R+ K +Q S+L+ +K+        A+  +++    P 
Sbjct: 121 ITIELILDDRRVDVIGERFDVVFRIGK-LQDSNLVAKKIAPNDFSLLASREFVELHGNPE 179

Query: 182 SIQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + +EL     I + +                D            VN    +++    G G
Sbjct: 180 TPEELVSLPAIVYTNGSMTADRFQMPSGTNGDELASYEMNGKYFVNEAELMIEGMKAGIG 239

Query: 241 IALLPDYIVKD---NPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRN 288
             L+ D+++ +      LV+++   D+ T S  +Y  Y         +K F  
Sbjct: 240 YGLICDFMLPEPLNEMGLVKLLPYADIYTQS-GIYAMY-SHRNQPPLVKFFIE 290


>gi|193077960|gb|ABO12874.2| transcriptional regulator lysR family [Acinetobacter baumannii ATCC
           17978]
          Length = 298

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 133/299 (44%), Gaps = 8/299 (2%)

Query: 1   MS--FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+    WD  + F VV   GSF+ AA +L ++Q ++  +I  LE ++G  LF R   GL 
Sbjct: 1   MNKQISWDDQKFFLVVLEEGSFSAAARKLGVTQPTVRTRIEHLEHQLGTVLFSRSVHGLK 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            TE    L      +    +             +G +R++ +  LG  +L   L +F LL
Sbjct: 61  PTEHALALEVPARAMQRASDYFMRTASAPLNLIAGSVRVSVSDFLGTMVLPQLLSKFRLL 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP++ I+L L+N   ++    AD AIR+  P+Q  +L+ +K+  + +  YA   Y++   
Sbjct: 121 YPEVNIELSLNNSSANLLEQEADLAIRMYPPVQ-EALVAKKIGEVPLGLYAHRDYIQRKG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P  +++L +H+LI      P        +  +  P  +     ++ +S+ +        
Sbjct: 180 NPTCLEDLRQHDLIG-----PDRNLLEREMIRMLLPELKNEQFKIRTDSHPAQFSAVKAA 234

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            GI  +   I      L++++ D+    + ++    E  +   K++   +++     ++
Sbjct: 235 LGIGFIQCPIANQCQELIQVIPDLEVHRYDLWLVIHEDFRQIPKIRTLFDYLAQALGNY 293


>gi|332305426|ref|YP_004433277.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172755|gb|AEE22009.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 301

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 133/299 (44%), Gaps = 19/299 (6%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+ F  VA  GSFT AAE + LS+  ++R +  +E  + ++LF+R  R ++LT QG +  
Sbjct: 7   LQSFVEVAHCGSFTKAAEIIGLSRLQVTRHVQDVEQWLNLRLFHRTTRKVSLTLQGEEAL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +   +      + +  G +R+AT I LGQNLL   ++EF+ L+P  QIQ++
Sbjct: 67  EFAKKILSSVADLESRAHSHNHELVGTIRVATPIGLGQNLLFDAVEEFVALHPKAQIQMV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC----REPLSI 183
           L +    +  +  D A+R         LI R+L+ I     A+P Y+             
Sbjct: 127 LSDGLSQLVEERVDIALRYIDQ-PHQQLIARRLMHIDSVLCASPDYIAKQVTQDSPLEQP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  HN +           +  W         +  +S  +Q N    I++  + G G+A
Sbjct: 186 SDLAAHNCLIHSS-------NHQWRIVSATSDEKVSVSGNIQANEMGVILKAALRGLGVA 238

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            LP  +         L +++ +   P   ++  Y         ++AF +F+   A+ W+
Sbjct: 239 NLPCDLANQYLRSQVLTQVLPEYRAPGHNLWAVYLSRDHQQNVVRAFIDFL---AQRWQ 294


>gi|300716727|ref|YP_003741530.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299062563|emb|CAX59682.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 501

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 69/281 (24%), Positives = 125/281 (44%), Gaps = 9/281 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  +  + S   AA+ L+L +SS+S+ +  LE  +G KL  R  R  T+T 
Sbjct: 1   MDQLLAMRVFIRITDARSLAKAADSLNLPRSSVSKLLQDLEQHLGAKLIERSTRSFTITP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +    T E+  +L+      + + V P GKLR+     L   ++   L EF   YP 
Sbjct: 61  LGERYREQTREILAQLDEMDTAARYAKVNPQGKLRVDVGSSLANEIIIPALPEFHARYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L ++++  D+  +  DC IR    +  SS+I R+L T+     A   YL     P+
Sbjct: 121 LELLLGVNDRPADLIGEGVDCVIR-GGVLPDSSMIGRQLCTLDYVTCATSGYLSAHGTPV 179

Query: 182 SIQEL-DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGS 239
             Q++ D H  + +    P   +      +      E    + + ++   ++ +  + G 
Sbjct: 180 HPQDIKDNHQTVRY--FFPHSGKSLPLQFSNGTDEFEIHGNTVVNISESTALTEALLTGM 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEAL 277
           GI  +  +  + +     L+ ++E+   PS  V   YP  L
Sbjct: 238 GIGQIFRFSAEHHFLSGRLIPLLEEWKQPSLPVQLVYPANL 278


>gi|227822930|ref|YP_002826902.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
 gi|227341931|gb|ACP26149.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 307

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 130/302 (43%), Gaps = 17/302 (5%)

Query: 1   MSFD----WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           M        + LRVF   AR GSFT A E+L ++Q+++S QI  +E  VG  LF R  R 
Sbjct: 8   MKMSKQFPLNALRVFEAAARLGSFTRAGEELGMTQTAVSYQIKLIEESVGEPLFLRRPRQ 67

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           +TLTE G +L    +E +  L       +  +      L I +T       L  N+  F 
Sbjct: 68  VTLTEVGQRLAPKVTEAFELLLEAVTSARTDADTA---LFIHSTPTFASQWLARNIGTFQ 124

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           + +P I ++L   +K ID   + AD AIR         L    L+ +      +P   + 
Sbjct: 125 IAHPHISVRLATADKVIDFGKEAADIAIRYGDG-NWPGLTCHPLMRVEFTPMLSPALAET 183

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                  ++L K  +I   D  P   + F      +  +     S L   ++ +  +  V
Sbjct: 184 IGGVHEPRDLLKLRIIDPND--PWWEQWFRAAGVENPELAGRPASRLGAQAFEA--RAAV 239

Query: 237 LGSGIALL-PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G G+A+L PD+   D+  L R+    +     S   +  YP A +N  K++AFR++I  
Sbjct: 240 AGQGVAILTPDFY-SDDVALGRLYQPFDLRCNDSHDYWLVYPHARRNAPKIRAFRDWILG 298

Query: 293 KA 294
           + 
Sbjct: 299 EL 300


>gi|170697804|ref|ZP_02888890.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137306|gb|EDT05548.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 299

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 134/292 (45%), Gaps = 7/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +WD  R F  +AR+G+   AA QL++ Q+++ R+I+ LE E+  +LF R      LT 
Sbjct: 6   RMNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPALYVLTT 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +     T +  +     + +G +RIATT  LG+  +   +      +  
Sbjct: 66  AGEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDSLGKRFVIPAIARLRRRHAG 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +  +   +  +++   AD AIR  +P +S  LI R+L  +    YA+ HYL    EP+
Sbjct: 126 IDVVCVTSTEIANLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRHYLAERGEPV 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +    D H+L+ +   +   M    W A    P    R+   Q +S + +++  + G GI
Sbjct: 185 AGSAFDGHDLVMYQQPVMPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEAALAGLGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A LP +  +  P LVR+M       F V+      L  T +++A    +  +
Sbjct: 240 AELPCFRAEAEPELVRLMARRCN-HFDVWLVAHADLYKTARVQAVIEAVVEE 290


>gi|126732239|ref|ZP_01748040.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
 gi|126707321|gb|EBA06386.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
          Length = 298

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 127/291 (43%), Gaps = 7/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +FDW++ R F V A  GS + AA  L ++Q ++ RQ++ LE E+G+ LF R  RGL LTE
Sbjct: 7   TFDWNRARAFLVTAEEGSLSAAARALGMTQPTLGRQVTALEEELGVVLFERVGRGLVLTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L      +        +     +   SG + IA        LL   LK    + P 
Sbjct: 67  SGTRLVEHVRAMGEAAVAVSLAATGQATDVSGPVAIAAPELYAMWLLPPVLKRLAEVAPG 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++++  N+  D+    AD AIR   P Q   LI ++L       + +P Y  +  E  
Sbjct: 127 IRVEVVSSNRMSDLKRREADIAIRNAAPDQ-PDLIGKRLTDDTAGLFCSPDYAASLGEVR 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              ELDK   I F +  P     F    T            L+  S+    +    G GI
Sbjct: 186 GPAELDKARFIGFEENAP-----FVAALTQRGVAVTDTSFGLRTTSHAVHWEVARQGLGI 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + P  +   +P LV+++ +V    + V+      LK + +++   + +  
Sbjct: 241 GIGPVTLGSGDPLLVQVLPEVTF-DYPVWLVAHRELKTSPRVRIVWDLLAE 290


>gi|239501130|ref|ZP_04660440.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB900]
          Length = 298

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 133/299 (44%), Gaps = 8/299 (2%)

Query: 1   MS--FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+    WD  + F VV   GSF+ AA +L ++Q ++  +I  LE ++G  LF R   GL 
Sbjct: 1   MNKQISWDDQKFFLVVFEEGSFSAAARKLGVTQPTVRTRIEHLEHQLGTVLFSRSVHGLK 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            TE    L      +    +             +G +R++ +  LG  +L   L +F LL
Sbjct: 61  PTEHALALEVPARAMQRASDYFMRTASAPLNVIAGSVRVSVSDFLGTMVLPQLLSKFRLL 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP++ I+L L+N   ++    AD AIR+  P+Q  +L+ +K+  + +  YA   Y++   
Sbjct: 121 YPEVNIELSLNNSSANLLEQEADLAIRMYPPVQ-EALVAKKIGEVPLGLYAHRDYIQRKG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P  +++L +H+LI      P        +  +  P  +     ++ +S+ +        
Sbjct: 180 NPTCLEDLRQHDLIG-----PDRNLLEREMIRMLLPELKNEQFKIRTDSHPAQFSAVKAA 234

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            GI  +   I      L++++ D+    + ++    E  +   K++   +++     ++
Sbjct: 235 LGIGFIQCPIANQCQELIQVIPDLEVHRYNLWLVIHEDFRQIPKIRTLFDYLAQALGNY 293


>gi|119504936|ref|ZP_01627013.1| putative transcriptional regulatory protein (LysR family) [marine
           gamma proteobacterium HTCC2080]
 gi|119459222|gb|EAW40320.1| putative transcriptional regulatory protein (LysR family) [marine
           gamma proteobacterium HTCC2080]
          Length = 300

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 21/306 (6%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  V  +GSFT AA    +  SS+SR+I+ LE  +G  L  R  R + +TE
Sbjct: 1   MDQLRALRYFSKVVETGSFTKAAATFSVPASSLSRRIADLEKSLGANLLKRTTRVVQVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + ++   +V   LE +   ++     P G LRI+T +  G+ +L   L EF  LYP+
Sbjct: 61  IGQQYYQQVQDVLAHLERSDESVRSYQASPKGFLRISTMVTFGERILIPLLDEFKALYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L   ++   +S D  D AIR      +  +   +L+       A+P YL +   P 
Sbjct: 121 IILDLSFSDELSTLSRDEVDIAIR-GGYAPNERVQAVRLMDNEFIPVASPDYLASNGTPK 179

Query: 182 SIQELDKHNLITF----GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
              +L  H  + F    G     C E   WL    + +          N+   + +  V 
Sbjct: 180 HATDLRDHQGLFFRTPNGPHPWVCEEKGQWLDVSGKALTI-------SNNSTWLRREAVA 232

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPS--------FTVYFCYPEALKNTGKLKAFRNF 289
           G GI + P + V+++ +  ++ E  I P           +Y  Y +      K+K   +F
Sbjct: 233 GRGICMTPRWSVQEDLDNGKVQELTIKPKVRVTQNKNLAIYLLYQKQQYAVPKVKVAVDF 292

Query: 290 IFLKAR 295
           +  + +
Sbjct: 293 LVSRIQ 298


>gi|33597515|ref|NP_885158.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33573943|emb|CAE38261.1| probable LysR family transcriptional regulator [Bordetella
           parapertussis]
          Length = 295

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 4/288 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
             V+A + SFT AA++L +S+S IS ++  LE E+G+ L  R  R +  TE G+ L    
Sbjct: 2   LAVLADTRSFTAAAQRLGVSKSLISLRMKALEQELGVSLLLRTTRSVRPTEAGALLVERA 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 LE +  E++  +  P G+LR+   + LG+  L   L      +PDI +++ L +
Sbjct: 62  RPALDTLEDSLGEVRNLARAPRGRLRLTAPVALGRQHLGIWLARLGQHFPDIALEVYLSD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +++  +  D A+R    +  +  + ++L     H  A+P YL     P    EL +H 
Sbjct: 122 RFVNLRQEGYDFALRHADQVSDA-YVSKRLCATRAHLVASPAYLARHGRPAHPSELARHR 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + +          F         +    + CL VN+   + +    G GIA++PD+ + 
Sbjct: 181 CLLYRGDERSPQWSFAPRQGRGAAVHVKPVDCLSVNNSELLRESAAHGLGIAMVPDFSLG 240

Query: 251 DNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           D  +L  ++           ++Y   P +   T   +     +    R
Sbjct: 241 DCADLEPVLPQWDCYAGFGRSLYLLKPFSATPTKAHRVVEQALAEHFR 288


>gi|329115688|ref|ZP_08244410.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum
           DM001]
 gi|326695116|gb|EGE46835.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum
           DM001]
          Length = 316

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 131/301 (43%), Gaps = 12/301 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V + G F+ AA    L +S +SR+I  LE  +   L  R +R  ++TE G
Sbjct: 10  DLNDFGYFVQVVKYGGFSAAARATGLQKSLLSRRIRLLEERLHTHLIQRSSRHFSVTETG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     +  K +T +  +     +P G +R++  + L        L  F++LYP + 
Sbjct: 70  HRFYEHCIAMLEKADTAERSVARLQTEPCGLVRLSCPVALLNFQFGALLARFIMLYPAVT 129

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL- 181
           +QL   N+ +D+  +  D AIR+R  PI SS L+ R L T      AAP  +     PL 
Sbjct: 130 LQLESTNRRVDVLKEGMDLAIRVRFPPIASSDLVMRTLDTSTQCLIAAPTLV---PHPLS 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           S  +L+    + F            N          EPR   L  +    + +  ++G+G
Sbjct: 187 SPADLNAFPSLDFHTTPGSHSWLLENQAGQTATIFHEPR---LATDDMAVLREAALVGAG 243

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  +P  +V  +    +L+R++ D    +  ++  +P        ++A  +F+  + R  
Sbjct: 244 IVQMPTMMVWQDIETGHLIRVLPDWHPQAGIIHAVFPSRRGLVPAVRALLDFLAKECRAQ 303

Query: 298 K 298
           +
Sbjct: 304 R 304


>gi|325523710|gb|EGD01975.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 306

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVELRSFTRAADMHGLARPVVSRAVADLEARFGGRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +L+   + V  +L+  ++E Q  + +P G LR+        N L   +  F   +P 
Sbjct: 61  TAERLYERCAAVLDELDALELEAQTQTREPEGLLRLVVHTTAALNQLVPLIAGFKSAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L  + +D+  +  D  I +   + S + + R +  I     A P YL+    P 
Sbjct: 121 LRLDVTLTERPVDLVGEGYDIGIVVPYMLTSETTVVRLIARIPFVIVATPAYLRTHPRPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  +     + +    F         +  P    +  NS +   +  +   GI
Sbjct: 181 TPADLADHPFVPLSPSLRRPALSFR---VDGDILTVPFRFDISSNSPVFNREMVMHDFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +V     +  LV ++ED         +   Y        ++KAF ++
Sbjct: 238 GVVPKTLVSAELASGALVPLLEDAELLDAFVEIKLAYANRALLPARVKAFIDY 290


>gi|262041486|ref|ZP_06014684.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041145|gb|EEW42218.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 295

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 133/295 (45%), Gaps = 5/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  +GSFT AA  L  +++ +S  +  LE E+G+ L  R  R L LT+ 
Sbjct: 2   LNLQRVTMFIAVVDAGSFTLAAAALGQTKAVVSFNVRQLENELGVTLLLRSTRRLRLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  E  Q E++ S    SG+LRI TT + G+ ++   L  F   +P +
Sbjct: 62  GVLFYQRGVALLNAAENLQDEVRASHSGLSGELRITTTPEYGEQVIIPALAAFARRHPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ +  +   D+  +  D AIRL   +  S     ++ +  +   A+P +L +     +
Sbjct: 122 RVRHVSSSHHADLISERFDVAIRLG-TLADSRYRATRIASFAILPVASPAWLASHPV-QT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +   I    L              +             +S  ++M + + G G+A
Sbjct: 180 LSDLAQAEWIIHERLPTPLRWQLRTDHQTEVDFAIASAPRFSADSATALMSFALAGCGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP ++V        LV ++ +   P   VY  YP++     +++AF +F+  K 
Sbjct: 240 LLPAWLVAKKVAQRELVPLLPEYHFPQQGVYALYPDSQHLPTRVRAFIDFLREKV 294


>gi|209550444|ref|YP_002282361.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536200|gb|ACI56135.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 298

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 127/297 (42%), Gaps = 11/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F  + LRVF   AR GSFT A ++L ++Q+++S QI  LE  VG  LF R  R + LTE
Sbjct: 6   QFPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    +E +  L       ++S     G L I++T       L   L  F L +P 
Sbjct: 66  TGERLAPKVTEAFAMLHDAMATARDS---VEGTLAISSTHTFASKWLAPRLGSFHLKHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++    +  ID + +  D  IR         L   +L+ +      +P   ++     
Sbjct: 123 IAVRFQASSDIIDFTREQIDVGIRWGDG-NWPGLTLHRLMGLEFTPMLSPKLAESAGGIK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L K +L   GD+  K   +   +   D      R    Q+ S        + G G+
Sbjct: 182 EPRDLLKLDLFDAGDIWWKQWFEAAGVTDTDLD----RRPRNQLGSQAVEADAAIAGHGV 237

Query: 242 ALL-PDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+L P +   +     L +  E   +     +  YPE  +N  K+KAFRN+I  + +
Sbjct: 238 AILHPAFYAAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWILDEMK 294


>gi|331016588|gb|EGH96644.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 302

 Score =  211 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 120/297 (40%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  V  +G F  AA     S SS+S  I  +E  +G++L  R  R +T T
Sbjct: 1   MNTDIQDLLAFVAVVNAGGFREAARISGKSASSLSDAIRRMEARLGVRLLNRTTRSVTPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+KL   +      +E+    + +   +PSG LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGAKLMERSVPALAAVESALDVVNDFRDRPSGTLRLNVPVSAARLVLPSIITPFLQTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++ +   +D+     D  IR    ++   +I   +          A+P YL    
Sbjct: 121 DIRLEVVTEESFVDMLAAGCDAGIRYDDRLEQD-MIAVPIGPRFQRFATAASPAYLAARG 179

Query: 179 EPLSIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            P   ++L  H  +   F        E      T+      P I  +   ++   +Q  +
Sbjct: 180 RPEHPRDLLDHACLRGKFPSGSLPPWEYEQEGETIRVDPSGPLIVRI-GGAFDLTVQAAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+  L +  ++   D+  L  I+E         Y  Y         L+AF +FI
Sbjct: 239 DGLGVVHLFEDWLRPHLDSGTLEPILEPWWQRFTGPYLYYHGRRYLPSPLRAFIDFI 295


>gi|167624986|ref|YP_001675280.1| DNA-binding transcriptional activator GcvA [Shewanella halifaxensis
           HAW-EB4]
 gi|167355008|gb|ABZ77621.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 303

 Score =  211 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 111/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L +AT+       L   L +F    P+I +
Sbjct: 68  SYFLDIKDIFTQLADATDRLLARSA--IGSLTVATSPSFAIQWLVPRLAKFSEKNPEIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI          +   KL    +    +P  L   +      
Sbjct: 126 RIKAVDDEDSSLTDDVDVAIYYGMG-NWPGMRADKLRNEVLIPVCSPLLLNGPKPLEKPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKNHTLLHDSSR----QDWLAWFRQCGITDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV    +V+      Y    +     GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKVAAFREWML 289


>gi|190573102|ref|YP_001970947.1| putative LysR family regulatory protein [Stenotrophomonas
           maltophilia K279a]
 gi|190011024|emb|CAQ44633.1| putative LysR family regulatory protein [Stenotrophomonas
           maltophilia K279a]
          Length = 314

 Score =  211 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 118/294 (40%), Gaps = 8/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L +F        F      L L +S++S++++ LE ++ ++L  R +R   LTE 
Sbjct: 2   LNLNDLALFVTAVEQRGFAAGGRHLGLPRSTLSKRVALLEEQLQVRLLQRSSRRFALTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +          ++E  +  +++   +PSG +RI+ +I + Q  L   L      YP +
Sbjct: 62  GQEFFERARAALSEVEAAEAIVRDRQAEPSGTVRISASIPVVQGELAACLPALARRYPRL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I++ + ++ ID++ +  D A+R    P+  S L+QR L +  +   A+P YL       
Sbjct: 122 RIEVEVSDRFIDLAQEGIDIALRSHFGPLPDSGLVQRMLGSERIVLVASPGYLAAAPAVD 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H     G L  +    +         +       L  N    ++     G GI
Sbjct: 182 TPEQLRAHA----GLLTARHATRWTLHGADAHTVQVEPQVALVGNESQLLIAAAEAGLGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP  +         L +++        T     P        ++   + +  
Sbjct: 238 TVLPHSLCAAAIAAGRLQQVLPAWHAGEVTTSVLLPHRRGQLPGVRVVVDALVA 291


>gi|325925660|ref|ZP_08187041.1| Transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325543933|gb|EGD15335.1| Transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 300

 Score =  211 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 123/297 (41%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     +  F  VAR+G F  AA+   +S S+ S  I  +E  +G++LF R  R + LT
Sbjct: 1   MSGHLADMEAFVRVARAGGFREAAKSAGVSASTYSDAIKRMEASLGVRLFNRTTRSVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ L    +    +LE  +  +      P+G LR+   +   + +L   L  F+  YP
Sbjct: 61  DAGNALLARIAPALLELENAREVVSAFRDTPTGTLRLNVPVSAARLVLPRILPAFMAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI ++++ +   +D+     D  IR  + +Q   ++   +      +   AAP YL    
Sbjct: 121 DITLEILTEESFVDVIAARCDAGIRYGERLQQD-MVAIPIGPRVQRIATAAAPGYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCV 236
            P   +EL  H+ I  G      + ++ +    +     P+   L          +Q  +
Sbjct: 180 RPTHPRELVAHDCIR-GRFPSGVIAEWEFERDGEVVTIVPQGQLLVEIGGGIELAIQAAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GSGI  L +  ++   D   L  I+     P    Y  YP        L+AF  F+
Sbjct: 239 AGSGILHLFEQWLQPQFDAGVLEPILRPWWQPFQGPYLYYPNRTLTPPALRAFIEFV 295


>gi|73540722|ref|YP_295242.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72118135|gb|AAZ60398.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 297

 Score =  211 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 129/297 (43%), Gaps = 11/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +L+ F   AR  SFT AA  LH++Q ++S+Q+  LE+ +G++LF R  + L LT
Sbjct: 1   MMPSMTELQAFEASARHSSFTAAARALHVTQGAVSKQVRSLESLLGVELFERVRQRLILT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +          ++E   +E      + +G L IA+   LG   L   L +F   +P
Sbjct: 61  PAGVRYLERVRPTLDEIEAATVE-AAGREQQAGTLHIASMPTLGAKWLIPRLPQFFARHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--R 178
           +++++ +   +    +    D AIR    +   SL    +    +     P  +      
Sbjct: 120 EVRLEFVPHAQGYVFAEPELDAAIRFGVGVWPGSLADYMIGR-EIVPVCRPALVAGHPGG 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              +  EL ++ L+     +P+   D  W A +  P  +      + + +  + Q  + G
Sbjct: 179 VVGAPAELQQYPLLHHT-TVPEAWPD--WFAELGVPTRDAWAGA-RFDQFSLLTQAALSG 234

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIAL+P  ++++   N  LV      +  +   Y CYPE  ++   L+ FR ++  
Sbjct: 235 LGIALIPRCLIEEELANGALVVAHPARVLSNKGYYLCYPEHKQHLPALQTFRAWLME 291


>gi|152988999|ref|YP_001349595.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964157|gb|ABR86182.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 303

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 117/290 (40%), Gaps = 5/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L VF  + R  SF H+A++L +S S++S  +  LE  +G+KL  R +R +  T+ G
Sbjct: 8   ELADLNVFMTIVRRRSFRHSAQELGVSTSALSHSMRNLEARLGVKLLNRTSRSVVPTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S L     + +  +     EL      P G+LR+    D  + L+   L+ F   YPD+Q
Sbjct: 68  SALAAKLEDGFQVIGEALGELDAYRTSPVGRLRLNVPRDASRLLVGPVLRRFTEAYPDLQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L ++++ +DI  D  D  IR    +    +       +     AAP YL     P   
Sbjct: 128 LELSVEDRMVDIVADGYDAGIRYGGTVPQDMVAVPLTGELRWVVAAAPDYLARHGVPERP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  I          +    L   +R +       L VN   + +   + G G+A 
Sbjct: 188 DDLLRHACIRMRLGDNSFYKWE--LGDGERMVAVDVPGPLSVNESNAAVAAALDGVGLAY 245

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +  + +      L  ++ +  +        YP   +    L+     I
Sbjct: 246 CLEVGIAEELRSDRLRLVLPEWTSMGAPFCLYYPSRRQPQPGLRQLMEMI 295


>gi|116691527|ref|YP_837060.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170736470|ref|YP_001777730.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116649527|gb|ABK10167.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169818658|gb|ACA93240.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 309

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 121/272 (44%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     ++
Sbjct: 24  RQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTDQM 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E    P+G+LRI        +     L  F   YP IQ+ +I++++ +D   +  D A 
Sbjct: 84  RELRATPTGRLRIQMLPGFALDHFGAPLAAFNQRYPGIQLDIIVNDRVVDPVEEGFDIAF 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           ++  PI S SLI+R+L T+     AAP Y+     P   ++L +H    +     +    
Sbjct: 144 QIFPPI-SESLIERRLFTVRRLFCAAPAYVDAHGAPQHPRDLLQHTTALYSGYPSRN--- 199

Query: 205 FNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIME 260
             W  T    + E  +  + + NS   + +Y + G G+  LP  +  D      LV I+ 
Sbjct: 200 -RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPILT 258

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D      +    YP   +   K++A   F+  
Sbjct: 259 DYQLAPLSFAAVYPATQRQALKVRALVEFLAE 290


>gi|171911231|ref|ZP_02926701.1| transcriptional regulator, LysR family protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 307

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 4/289 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LR F  +   GS +  A +L ++Q ++SRQ+  LE   G+ L  R    ++LTE G
Sbjct: 6   DLSLLRAFISIVECGSISAGARRLRITQPTLSRQLKTLEERCGMALLRRDTHQMSLTEAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++      +  ++E     L+ES    SG LR+  TID GQ      + +FLL +P + 
Sbjct: 66  HRVLADGHALLAQVEAADKRLRESHTTLSGHLRLFATIDFGQFGATRMISQFLLAHPKVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L N+ + +  + AD  + L   +   S+I R++    +    AP  +K        
Sbjct: 126 ASLALTNRPLHMIQEGADVGV-LPGKVTDDSVIARRVGAFSLILAVAPALVKRQPPAKKP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L     I           +        +                S  +  + G G+ +
Sbjct: 185 DDLTSWPWIALAGAQFWNARELALRGRSGKTHTLRIDPVFTSEGVTSCREAALAGVGLTV 244

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           LP ++++ +    NL++++ D       V+  Y        ++ AF +F
Sbjct: 245 LPRWMIEGDLREGNLLQVLPDWNPGDLPVHVIYAGHRLLPVRVSAFIDF 293


>gi|317405757|gb|EFV86049.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 288

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD  R+F  + R+G+   AA  L + Q++  R+++ LE  +  +LF R   G   T  
Sbjct: 1   MDWDNARIFLAIYRNGTLRGAAALLQIDQATAGRRLAALEASLDARLFLRTPSGYVPTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +    +  Q ++Q    + SG +R+AT+  +    +   +    + +PDI
Sbjct: 61  GEQAFAAAERMEQAADQLQRQMQGLDHRLSGVVRVATSETVASYFIMEAISRLHVQHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    +  +++   AD AIR  KP  +  LIQR L    +  YA+  YL+   EP  
Sbjct: 121 RVALSTSIQLSNLTRREADLAIRNIKP-DNPDLIQRHLARKEVGLYASRSYLEAHGEPRP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H L+T+   +     D         P G  RI  +++NS L I++    G GI 
Sbjct: 180 GTAFAGHTLVTYQQAVLPGWSD----TFCGEPTGNGRI-AMELNSGLMIIEAVAAGLGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LP ++    P+LVRI     +  + ++      L  T +++A  + I  
Sbjct: 235 ELPIHMAPQYPDLVRIWP-HRSEPYDLWLVMHGDLNRTARVRAVADAIVE 283


>gi|73541591|ref|YP_296111.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72119004|gb|AAZ61267.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 308

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 121/289 (41%), Gaps = 5/289 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L V   VAR  SF  AA +L +S +++S  ++GLE  + ++LF R  R + +T+ G + 
Sbjct: 8   ELEVVLAVARRSSFRGAALELGMSATAVSSAVAGLEARLKVRLFNRSTRSVAMTDAGRRY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    +++    E    S  PSG LRI     +   LL+    ++   YP + I +
Sbjct: 68  VERIAPALAEIQRANEEAAMESAAPSGTLRINAPQGVALLLLEPLFHQYAQRYPQVFIDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +++ ID+  +  D  IRL + +    +       + M   A P YLK    P   ++L
Sbjct: 128 VSESRLIDVVAEGFDAGIRLAESVPQDMIAVPLSRDLRMLVVATPDYLKRNGTPRHPRDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            KH  I          +    L      +       + ++   +I Q  +LG GI  + +
Sbjct: 188 LKHQSIGMRMSHGGIYQWE--LKHKSEKLQMELPVRMALSEMPAIKQAVLLGLGIGFISE 245

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + + +   +  LV ++     P   +   Y      T +L+A    I  
Sbjct: 246 WFIDEELKSGALVPVLVPWCQPFGGLRLYYSGHRFVTARLRALVELIHE 294


>gi|331014484|gb|EGH94540.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 280

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 117/270 (43%), Gaps = 7/270 (2%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           + + +  ++R I  LE  + ++LF R  R + LT +G + +         L  T      
Sbjct: 1   MQVGRPHLTRIIQDLEASLDVRLFQRTTRSVKLTAEGQRFYERVKSNLADLAETTSMFDR 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
           +     G+LRI       Q      L+ F   +PDI + L + ++ +D+  +  DCA+R+
Sbjct: 61  NGSTLRGRLRIDIPAAFSQRSFMETLRGFTRAFPDIDVVLGVTDRTVDLVAEGIDCALRI 120

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
            + +  SSL+ R +    M   AAP YL+    P ++++L +H  ++F  L  +      
Sbjct: 121 GE-LPDSSLVVRNIGKATMVTCAAPSYLQAFGTPETLEDLKRHCGVSF--LSGQNNRPLP 177

Query: 207 WLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDV 262
           W  +++   +  P    + VN   + +Q  + G GI   P   V+    +  LV ++E  
Sbjct: 178 WHFSLNGEDLPYPAQGAITVNESNAYVQCGLAGFGILQAPGITVESFLASGELVEVLEAY 237

Query: 263 ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 V   YP       +++AF  ++  
Sbjct: 238 RPLPRPVSVLYPSRTHLAPQVQAFVEWLRA 267


>gi|34495964|ref|NP_900179.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34101818|gb|AAQ58186.1| probable transcriptional regulator LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 298

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 13/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L VF  VA  GSF  A   L +S S++ ++IS LE ++G++L  R+ R L LT +G
Sbjct: 3   SLSELAVFIAVAEQGSFVGAGRVLGVSASAVGKRISRLEVDLGVRLLQRNTRSLALTAEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +      +  + E+ ++ L+ SS +P G LR++        +L   L  F   YP++ 
Sbjct: 63  ETVLSRGRSLLDEAESLRVVLERSSRQPGGVLRLSLPP--IGGVLMAELAAFRQRYPEVA 120

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L    +++DI  +  D AIR+        L    L        AAP YL    +P S 
Sbjct: 121 LELDYSERNVDIIEEGFDAAIRVGAG-DDGKLRSLALPGFRRLIVAAPDYLVRHGQPRSA 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H LI +       +E +         +       L  NS  + + + + G GIA 
Sbjct: 180 AQLAEHQLIHYRSPNSGKLEAWPL-------VNAELPRALVCNSVHARLDFALQGQGIAC 232

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LPD  ++   ++ +L  ++         +   +P +   + +++AF  F+  +
Sbjct: 233 LPDISIRRELEDGSLRPLLGSENGEKVVLRLLWPSSRGLSARMEAFLGFMRER 285


>gi|77360770|ref|YP_340345.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76875681|emb|CAI86902.1| putative transcriptional regulator with periplasmic binding protein
           domain (LysR family) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 294

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 122/292 (41%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           ++   L  F  V  +     AA +  LS +++S ++S LE E+   L +R +R + L+  
Sbjct: 2   YNISDLETFIAVVENKGVLAAAREQGLSPATVSHRLSKLERELSTVLVFRDSRRVRLSPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +   L   +  +   S   SG LR+     +    +   L EF   YP +
Sbjct: 62  GEVFYTRVGAIIEALHDAEHSIGARSSTVSGLLRVTMPPWIFSKYVMPKLSEFESEYPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++  ++ +  I++  D  D AIR+ + +  S ++ RK+V       AAP Y+     P +
Sbjct: 122 KLDFLITDHFINVVDDAQDVAIRVGQ-LNDSGMLSRKIVNNSRVLCAAPSYINKQGMPSN 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL  H  +          +         +       +   +++  ++ Q  + G GIA
Sbjct: 181 LTELAAHYWVCLP-----WQKQLKLFDEQGKIHSFNAKTRFTISNSDNMTQAAIAGHGIA 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           +     + +   N  LV +M  V+  S   V+F  P+    T K + F NFI
Sbjct: 236 IKSKIAIGEELANGTLVEVMPGVMAQSDAPVWFLRPQNSLTTRKTEVFFNFI 287


>gi|15966074|ref|NP_386427.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15075344|emb|CAC46900.1| Putative transcription regulator [Sinorhizobium meliloti 1021]
          Length = 296

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 129/297 (43%), Gaps = 8/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + +    F  V   G F  AA  L+L +S++S++++ LE ++G++L  R +R   +TE G
Sbjct: 3   NLNDFTFFVHVVDHGGFAPAARALNLPKSTLSKRVAELEKDLGVRLINRTSRHFAVTESG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R  + +  + E  +  ++    +PSG +RI  ++   Q  L   L +  L YP ++
Sbjct: 63  KDFYRHAAAMMIEAEAAENVVRGRLAEPSGTVRITASVPTAQLSLAPLLPQLALAYPKLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   ++ +D+  D  D A+R    P+  S L+QR++        A+P YL+    P  
Sbjct: 123 VTLHATDRFVDVIQDGFDLAVRDHFAPLPDSGLVQRRIGFQAKLIVASPLYLQGNGTPER 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++LD H+    G L     E +         +          +    + +  + G GI 
Sbjct: 183 PEDLDHHD----GLLTSLASEGWVMERADGSTVSVSPRPRFVADESRVLREAALAGLGIT 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  + +   ++  L+RI+ +            P        ++A  +FI  +  D
Sbjct: 239 TLPGKLCQQEIESGTLIRILPEWTAGKVMTTILMPHRRGQLPSVRATVDFIAERLVD 295


>gi|330830712|ref|YP_004393664.1| putative HTH-type transcriptional regulator YcaN [Aeromonas veronii
           B565]
 gi|328805848|gb|AEB51047.1| Putative HTH-type transcriptional regulator YcaN [Aeromonas veronii
           B565]
          Length = 313

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 119/294 (40%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  +L VF  VAR  SF+ AA +L +S S++S  + GLE  +G++L  R  R +  TE G
Sbjct: 8   DLAELAVFAAVARHRSFSKAALELGVSASALSHSLKGLEARLGVRLLNRSTRAVVPTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +      + LE    EL  +S +P G+L++        +LL   L ++L  YP +Q
Sbjct: 68  QRLLKQLLPTLNTLEEALCELARNSDEPVGRLKLCAPRGAIDSLLAPVLIDYLARYPRMQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLS 182
           ++++       +  D  D A+     +    +I   L          +P YL     P  
Sbjct: 128 VEVVEQELMPRLIEDGYDAALFYGDLLPKE-MIGIPLGPPQRYLVVGSPAYLAEHGTPEH 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             EL +H  I +     +    + W    D  + E  ++  L  ++    +     G G+
Sbjct: 187 PSELSRHACIGYRLTPHR---HYRWAFAADGTMLEIEVTGPLTTSTPALYLGAAEAGLGL 243

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A   +  V        L+ ++E         Y  YP   +    L+   + +  
Sbjct: 244 AYCLEEEVSQKVAEGKLLTVLEPWCPTFAGFYLFYPSRHQLGSGLRILIDMLKA 297


>gi|239832555|ref|ZP_04680884.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239824822|gb|EEQ96390.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 310

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    S+   S    +AT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAMASAQSTS-SFSVATLPTFGTRWLMPRIPDFVEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   +   D      D AI   +P+ + +     L +  +   A P  LK  R P + 
Sbjct: 129 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHA-TCTFLCSEVIVPVACPSLLKA-RHPSAP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+   L+    L  +      W  +     G+      + + +  ++   + G G AL
Sbjct: 187 EELENEPLLH---LATRPKMWAQWFESCGVE-GQSAYRGHRFDQFSMVIGAALAGLGFAL 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++    +  LV + E  +      Y   PE        + F  +I  + 
Sbjct: 243 LPLYLIEQELRSGELVMLFEKPMRTENEYYLVVPEGKLENPLTQVFCQWIAGQV 296


>gi|307305629|ref|ZP_07585376.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307317632|ref|ZP_07597071.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306896790|gb|EFN27537.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306902332|gb|EFN32928.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 296

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 129/297 (43%), Gaps = 8/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + +    F  V   G F  AA  L+L +S++S++++ LE ++G++L  R +R   +TE G
Sbjct: 3   NLNDFTFFVHVVDHGGFAPAARALNLPKSTLSKRVAELEKDLGVRLINRTSRHFAVTESG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R  + +  + E  +  ++    +PSG +RI  ++   Q  L   L +  L YP ++
Sbjct: 63  KDFYRHAAAMMIEAEAAENVVRGRLAEPSGTVRITASVPTAQLSLAPLLPQLALAYPKLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   ++ +D+  +  D A+R    P+  S L+QR++        A+P YL+    P  
Sbjct: 123 VTLHATDRFVDVIQEGFDLAVRDHFAPLPDSGLVQRRIGFQAKLIVASPLYLQGNGTPER 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++LD H+    G L     E +         +          +    + +  + G GI 
Sbjct: 183 PEDLDHHD----GLLTSLASEGWVMERADGSTVSVSPRPRFVADESRVLREAALAGLGIT 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  + +   ++  L+RI+ +            P        ++A  +FI  +  D
Sbjct: 239 TLPGKLCQQEIESGTLIRILPEWTAGKVMTTILMPHRRGQLPSVRATVDFIAERLVD 295


>gi|114049104|ref|YP_739654.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113890546|gb|ABI44597.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 305

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 121/296 (40%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F  VA  GS + AA ++ LS +S S  I  LE ++   LF R  R L LT Q
Sbjct: 1   MLLNDLALFVRVADCGSISAAAAEMELSAASASAAIKRLEKQLDTSLFVRTTRSLRLTAQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L   +  +     K SG L ++ + D G+NL    L +FLL +P +
Sbjct: 61  GERYLIHCRRALSDLALGEQAIASDKGKISGTLSLSVSSDFGRNLFIPWLDDFLLDFPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L L +       D  D A+R  KP Q S+ +   + ++     A+P YL    +P +
Sbjct: 121 QVRLHLGDNISSFYHDKIDVAVRYGKP-QDSNQVAFPICSVDRVLCASPEYLAKFGKPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L +HN + +   +     D        +            N      ++ V G G+ 
Sbjct: 180 LEQLTQHNCLFYK--LDDRTHDQWQFERDGQEFKIRVTGNRSANDAEIARRWAVAGKGLV 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                 + ++     LV ++ +    +  +Y   P     T  +   R  +  + +
Sbjct: 238 FKSSLDLAEDIMAGRLVPLLSEYRGEAVNLYLVCPGREHVTPVVLLLREMLRQQTQ 293


>gi|187479723|ref|YP_787748.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115424310|emb|CAJ50863.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 312

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 125/289 (43%), Gaps = 7/289 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + VF  VA   SF+ AAE L L+ ++++  +  LE  +G+ L +R  R L LTEQG K 
Sbjct: 6   AMTVFVRVAECSSFSRAAESLDLANATVTACVRNLELSLGVTLIHRDTRRLHLTEQGEKY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E+   ++  +IE++    +  G L + T I  G   L   L  F L +P I   +
Sbjct: 66  LERAREILRAVDDAEIEVRSQLGELRGPLVVETPISFGHAFLCPALHGFALRHPGISTMV 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L N+  ++     D AIR+ + ++ + LI R +        A P        P    +L
Sbjct: 126 TLTNQPHNLIEKAIDVAIRMDR-VEDAGLIARPIYEARYVVCATPE--VAAGLPEHPADL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           +  + +       +    +      +    +PR   L  NS  +++   + G+G+  + D
Sbjct: 183 NPQDCLGVLAEERRTSNPWLLTREEETVAVQPR-GTLHFNSNDAVVNAALHGAGVIHVLD 241

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             V    +   LV +  + IT   T Y     A  ++ K++AF +F+  
Sbjct: 242 IFVLRAIEQGTLVPVYTNWITQCRTFYSVTTRARNDSAKVRAFTDFLSE 290


>gi|72383824|ref|YP_293178.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72123167|gb|AAZ65321.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 303

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 128/296 (43%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   +  F  V   G FT A   L L +S++S ++  LE  +G++L  R +R  T+TE 
Sbjct: 2   LDLKDVYFFVQVVDRGGFTSAGNSLGLPKSTLSHRVKELEASLGVRLINRTSRQFTVTEV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++ ++    +    +  +  +++   +PSG +R+   ++L Q  L+  L  FL  +P +
Sbjct: 62  GAEFYQYAVALLQSAQVAEEAMRQRLAEPSGVIRVTVAVELAQFALRRILPTFLGNHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            I  +   + +D+  +  D AIR    P+Q S+LIQR L       +A   YL+      
Sbjct: 122 SIIEVATERLVDVVGEGFDLAIRGHTAPLQDSNLIQRPLARAPWFLFAGADYLERAPRLD 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H +I  G   P   +             EPR    Q  S +S+ +      GI
Sbjct: 182 EPAQLASHTIIAMGRKGPPQWQLQGPQGQTVTVHIEPR---FQSTSMMSLKEAACSNLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A +P YI +    +  L +++   I     +    P        +++  +F+ ++ 
Sbjct: 239 AAIPGYICRAELQSGLLRQVLPGWIAADARISALIPYRTGLLPAVRSLVDFLAVEL 294


>gi|254248907|ref|ZP_04942227.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875408|gb|EAY65398.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 306

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L+  ++E Q  + +P G LR+        N L   +  F   +P+
Sbjct: 61  TAERIYERCAAVLDELDALEVEAQTHTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L  + +D+  +  D  I +   + S S + R +  I +   A P YL+    P 
Sbjct: 121 VRLDVTLTERPVDLVGEGYDIGIVVPYMLTSESTVVRLVERIPVVIVATPAYLQAHARPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  +     + +    F         +  P    +  NS +   +  +   GI
Sbjct: 181 TPADLANHPFVPISPSLRRPALSFR---VDGNLLTVPFRFDISSNSPVFNREMVMHDFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +V+    +  LV+++ED         +   Y        K+KAF ++
Sbjct: 238 GVVPKTLVQTELASGALVQLLEDADLVDAFVEIKLAYANRALLPAKVKAFIDY 290


>gi|307307291|ref|ZP_07587027.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306901805|gb|EFN32405.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 319

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 124/297 (41%), Gaps = 9/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DWD  R F  V  +GS + AA ++ LSQ ++  +I GLE  +G  LF R   GL  T 
Sbjct: 28  NVDWDDQRAFLAVMETGSLSAAARRMGLSQPTVRARIEGLEAALGTALFTRSVHGLVPTP 87

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               +      + H  E         S   +G++R++ +  +G  +L   L+     +P 
Sbjct: 88  TAEAMATPARAMAHASEAMLRAASADSATAAGRVRLSVSEFVGIEVLPPMLRSLRDKHPQ 147

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++  L N   D+     D A+R+  P + S+L+ +K+  I +  +A   YL     P 
Sbjct: 148 LTVEFELSNARADLLDQQVDVAVRM-HPPEQSALVAKKVPLIPLGLFAHRDYLAVYGRPA 206

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           +  E+  H  I           +   LA   +  G   +S + + +S+ + +     G G
Sbjct: 207 TKAEVRDHLFIGPD-------RNRGDLAVAAQIAGSVPVSWIARTDSHPAQLALARAGLG 259

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA+         P L R++ DV  P    +    E L+   ++ A  + +      +
Sbjct: 260 IAVAQIPAAARYPELERVLPDVELPQLPTWIVTHENLRRLPRVAALFDHLVEAFESY 316


>gi|152978982|ref|YP_001344611.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150840705|gb|ABR74676.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 288

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 125/296 (42%), Gaps = 14/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + LR+F  V + GS + A+++L++  ++ISRQI+ LE  + I+LF R   G+  T  
Sbjct: 1   MNLNALRLFVAVVQDGSLSKASKKLNVPIATISRQIAELEKSLNIQLFDRFKSGVKPTMA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+         L      L E   +  G LRI+         +   + +F   +P I
Sbjct: 61  GQRLYEQVYLSIDNLVNAAQVLNEEQAELKGILRISAPP--NCTPVLAWIADFQSQFPQI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI   L +  +D++ D  D A R+   +     I +K++ +     A P+ L     P +
Sbjct: 119 QIHCSLTDNLLDMAADGIDVAFRMGD-LHGDQFIAQKVLEVQAKWAAHPNLLAQLGTPQT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +Q+L    L  +     K +       T++ P           N   ++      G  + 
Sbjct: 178 VQDLSNFPLAGWARKGEKTLSINMGKKTLNLPY------LFASNESFAVEFMAKQGKAVC 231

Query: 243 LLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LL DY    + ++   LV I+ D  +P F +   Y      +  ++AF  F+  K 
Sbjct: 232 LLADYSVEHLAREYG-LVPILPDFDSPKFALTMLYAAHRYPSSVVRAFVEFVMGKV 286


>gi|299770824|ref|YP_003732850.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700912|gb|ADI91477.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 303

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 129/299 (43%), Gaps = 6/299 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V    SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+
Sbjct: 4   ALDFNTLKVFIAVVERESFVGASKILEMPTSNVSRCISQLEEKLDLQLIERSTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   YPD
Sbjct: 64  AGQLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVIADFACQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  + +    +   D  D AI + R  + +S  I R LVTI     AAP  ++    P
Sbjct: 124 LEISCVTNLSGFESLRDDLDLAIIITRGQMDNSDYIARHLVTIPCTIVAAPSLIQRYDTP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             IQ+ ++   IT    +      + ++               +VNS     Q  + G G
Sbjct: 184 THIQQFEELPCITTVSALKGA--PWQFVNKKGEFETIKVKGHYRVNSGEMAGQAAISGVG 241

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            A+L     +    +  L+ I  +       ++  Y        K +A  +F+  K  D
Sbjct: 242 FAILSKQACQPYISDGRLIEIEFEQSVAPLQLFALYSNRRYLPAKTRALIDFMQQKLSD 300


>gi|73539717|ref|YP_294237.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72117130|gb|AAZ59393.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 322

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 124/300 (41%), Gaps = 13/300 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +++ L  F  VAR+G F  AA    +S SS+S  +  LE+++G++L  R  R +  TE 
Sbjct: 23  MEFNDLAAFVSVARAGGFRDAARISGVSASSLSIAVRRLESKLGLRLLNRTTRSVAPTEA 82

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    + ++ ++E+    L     KPSG L++         +L   L  FL  YPDI
Sbjct: 83  GLRLLERLTPLFSEMESALDVLNAFRDKPSGTLKLNVPSSAAWTVLPAILPPFLEAYPDI 142

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCREP 180
           ++++++++  +D+     D  IR  + ++   +I   +          A P YL     P
Sbjct: 143 RVEVVVEDGFVDVLAIGCDAGIRYEERLEQD-MIAIPIGPRVQCFATAATPGYLDKHGRP 201

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLG 238
              ++L  H  +  G         + +    +    +P    L     S    +   + G
Sbjct: 202 AHPRDLLSHVCLR-GQFASGATPPWVFERDGEALRLDPPTRLLIRPAASIDLAISAALAG 260

Query: 239 SGI-----ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+       L  Y+  ++  L  I+E         +  YP        L+AF +F+  +
Sbjct: 261 VGVIHIFEGRLRPYL--ESGALEPILEPWWQQFSGPFLYYPGRRHLPAPLRAFVDFLKDR 318


>gi|10954649|ref|NP_066584.1| hypothetical protein pRi1724_p004 [Agrobacterium rhizogenes]
 gi|10567313|dbj|BAB16122.1| riorf3 [Agrobacterium rhizogenes]
          Length = 293

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 120/288 (41%), Gaps = 9/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F     + S + AA  L + ++++SR+++ LE  +G++L  R  R L LT+ G   +
Sbjct: 1   MVAFTKTVEAKSLSRAAAGLRVPRATLSRRLARLEDRLGMRLLRRTTRSLALTDAGELFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R        +   +  ++ ++    G LR++    +  +     + +F   YP++++ + 
Sbjct: 61  RHACIALEAVRQAEQSVRMTNDVVRGDLRVSVPPIMSASF-NAAVCDFAASYPELRVHIH 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             N+  D+     D A+R    I+   L+ R L+   M   A+P YL     P S  +L 
Sbjct: 120 TSNQRADLLNGNYDVALRASSQIE-PGLVARTLLRDPMITVASPDYLIARGTPQSHLDLK 178

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +         + + +W  T               N    +    + G GIALLP  
Sbjct: 179 NHRCLL--GFARGELAETHWPLTSGGKFKVE--GAFYANGIELLCDAALRGLGIALLPQG 234

Query: 248 IVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +V  +     LV++++  I     +   YPE      +++AF + I  
Sbjct: 235 LVSAHLKSSALVQVLDGAIGSEMQIALVYPERTYMKPQVRAFIDAIAA 282


>gi|254502247|ref|ZP_05114398.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438318|gb|EEE44997.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 293

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 137/292 (46%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    AA++L L+ ++++R+++ LE  +G +LF R   G  LT+ 
Sbjct: 1   MNWDDIRIFLGVARTGQILAAAKRLGLNHATVARRLTALEGSLGARLFDRSTSGCVLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+       +       + +L + + + SG +RI      G   L   L      +P +
Sbjct: 61  GSRFFDRAEMMEAAALAAEADLGDDTPEISGTVRIGAPDGFGVAYLAPRLGLLTRQHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL+  ++   +S   AD A+ + +P ++  LI  KLV   +  YA+  YL     P +
Sbjct: 121 TVQLVPVSRSFSLSRREADIAVTIERP-ETGRLIAGKLVDYALGLYASKTYLMERGIPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H+LI + + +      ++          +   +  ++ S L   +    G+GI 
Sbjct: 180 PSDLSAHDLIGYVEDL-----LYSASLNYGAEFFKGWTARFEIASALGQTEAVKAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +L D+I + +P LV I+ D+       +    E+ +    + A ++F+  + 
Sbjct: 235 ILHDFIARADPCLVPILPDMKL-KRAYWMVTHESSRPLRHVAAVQDFLREQV 285


>gi|194437133|ref|ZP_03069232.1| LysR substrate binding domain protein [Escherichia coli 101-1]
 gi|194424116|gb|EDX40104.1| LysR substrate binding domain protein [Escherichia coli 101-1]
          Length = 290

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 4/284 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L +   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
             V+       L+R+++         +  YP           FR
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFR 290


>gi|222084563|ref|YP_002543092.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722011|gb|ACM25167.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 312

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 129/295 (43%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               +++R F  VA  GS +  A +L + QS+++R +  LE  VG+ L  R  R +T+T+
Sbjct: 5   DVSLERMRTFVRVAERGSLSAVARELEIGQSTVTRHLRELEEAVGVPLLSRTTRRVTMTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +GS+ +  + ++   +E    E + +   P+G +RI+ T   G   +   +  F   YP+
Sbjct: 65  EGSRYYADSIQILRLVEQAGDEARSTRGAPAGTIRISCTAAFGVLHISRMIFAFQDRYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++ +D+  +  D A+RL  P+  SS   R L        AAP YL     P+
Sbjct: 125 IAVDLSLTDERVDLVEEGVDIALRLG-PLADSSTKLRALGQSRRLLAAAPAYLAARGTPV 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  I   ++     +         +    P     +V+  L+  +  V G GI
Sbjct: 184 VPQDLCDHEGIRMSNIAGS--DTLVLQGPDGKRHMVPFGGRFRVDHGLAAREALVAGRGI 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A    ++V D      LV I+ D   P   +            +++   +F+  +
Sbjct: 242 APTHHWLVDDLLATGRLVAILPDYALPPVPLSMLIVPERAGIARVRLLIDFLAQE 296


>gi|254449652|ref|ZP_05063089.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198264058|gb|EDY88328.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 292

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 131/296 (44%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AA+ L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAFQVARIGTVSGAADVLGVHHATVIRHIDALEQRLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +V +    +       ++      SG L + + I L   +L   L +F    PD+ 
Sbjct: 63  QDLMQVAAATDDQFTQLAGRIRGQGEGVSGDLVVTSLIMLSP-ILTPVLAKFRRENPDLT 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +  ++   +    A  AIR  +       + +  V+  MH  AAP Y+     P   
Sbjct: 122 VRFLTGDRLFRLEYGEAHVAIRAGEAPNQPDNVVQPFVSQTMHLVAAPSYIAEYGLPDGE 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I       +      +   +   + + RI   +   + ++    + G+GI  
Sbjct: 182 SDLVNHWFIGHDSAESRA----PFNRWLTEKVPQNRI-VFRTTDHRAMFDAVLEGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +  + +K +P LV ++      S  ++      L  T K++AF  F+  +A  W+ 
Sbjct: 237 VATWELKRHPELVEVIPSEEEWSGPLWLVTHVDLHRTTKVQAFLTFLKKEAEGWEL 292


>gi|295700226|ref|YP_003608119.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439439|gb|ADG18608.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 345

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA+ GSF  A E+L + +SS+SR +  LE ++  +LF R  R   LT +G +    
Sbjct: 35  TFMAVAKEGSFAKAGERLGVGRSSVSRSVQRLEKQLSTRLFLRTTRTTRLTREGERFFEH 94

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            +     +     ++ +     P G LR+++ I  G+N++   L +F  LYPDI ++L+L
Sbjct: 95  CNLGVAHIVGAVNDMLDLRHGPPRGLLRVSSGIGFGRNVVAPLLLKFSELYPDISVELLL 154

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D+K +D +    D A R    +  S ++ ++L+ + +   A+  Y +    P S+ EL +
Sbjct: 155 DDKPVDFAGGQIDVAFRDGH-LADSRIVAKRLIPMQLIVCASRSYAERHGLPSSLGELGQ 213

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H  I       + +E    +    + +  P  S L  N    + +  + G GIA +P + 
Sbjct: 214 HECINMRHSTGRVLEWEFMVDGRTQKLLPP--SKLTFNDADLVREAVLRGRGIAQMPAHQ 271

Query: 249 V---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +        LV  +   ++   + Y CY        +++ F +F+  + R
Sbjct: 272 IWDYARRRELVMTLNQHVSNERSYYICYLCREHLPIRVRVFIDFMTEQIR 321


>gi|213969831|ref|ZP_03397965.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. tomato T1]
 gi|301385005|ref|ZP_07233423.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060453|ref|ZP_07251994.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. tomato K40]
 gi|302133288|ref|ZP_07259278.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213925379|gb|EEB58940.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. tomato T1]
          Length = 302

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 120/297 (40%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  V  +G F  AA     S SS+S  I  +E  +G++L  R  R +T T
Sbjct: 1   MNTDIQDLLAFVAVVNAGGFREAARISGKSASSLSDAIRRMEARLGVRLLNRTTRSVTPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+KL   +      +E+    + +   +PSG LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGAKLMERSVPALAAVESALDVVNDFRDRPSGTLRLNVPVSAARLVLPSIITPFLQTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++ +   +D+     D  IR    ++   +I   +          A+P YL    
Sbjct: 121 DIRLEVVTEESFVDMLAAGCDAGIRYDDRLEQD-MIAVPIGPRFQRFATAASPAYLAARG 179

Query: 179 EPLSIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            P   ++L  H  +   F        E      T+      P I  +   ++   +Q  +
Sbjct: 180 RPEHPRDLLDHACLRGKFPSGSLPPWEYEQEGETIRVDPSGPLIVRI-GGAFDLTVQAAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+  L +  ++   D+  L  I+E         Y  Y         L+AF +FI
Sbjct: 239 DGLGVVHLFEDWLRPHLDSGTLEPILEPWWQRFTGPYLYYHGRRYLPSPLRAFIDFI 295


>gi|170694876|ref|ZP_02886026.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170140236|gb|EDT08414.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 324

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 138/299 (46%), Gaps = 11/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++VF  V    SF+ AA+ L L +S++S  +  LE  + ++L  R  R L+LT 
Sbjct: 1   MDRFQSMQVFARVVELNSFSRAADALRLPRSTVSVVVRKLEAHLRVRLMQRTTRHLSLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G++ +R    +  ++  ++  L  +   P G+L +     LG+ ++   + +F   +PD
Sbjct: 61  EGAEYYRHCIRILAEIRESEEMLASARNGPRGRLSVQIATALGRIVVLPAIDDFHKRFPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + LD++ I  S +  DC IR+ +P +   +IQR+L  + +    +P YL    EP 
Sbjct: 121 LELMIGLDDRPIHPSDENLDCTIRMGEP-EDPGVIQRRLCDLEIVTAGSPDYLVRYGEPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            ++++ +H  +    L        N++  ++    E  + + L ++   S       G G
Sbjct: 180 RVEDIPQH--LAVHCLSHATGRVANFMFDINGDAVEVGLPAALSISDAESCAICSANGMG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLK 293
           +   P +I+    ++  LV ++         V   +P   +   K + F  +   +  K
Sbjct: 238 LIQAPRFILAPYLNSGALVEVLSQWQPGPMPVAAVFPHRRQIALKARVFVEWAAELLEK 296


>gi|171316651|ref|ZP_02905865.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171098198|gb|EDT43007.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 314

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 135/296 (45%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDSGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  + ++      PSG+LR+        +++   +  +   +P
Sbjct: 61  EEGRAFLQDARAIIESVENAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVHGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L  +   ID+     D AIR+ + ++ S+L  R++    +   A+P YL+   +P
Sbjct: 121 KVDLELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGNSRLRILASPAYLEAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L KH L+ F    P+ +  +  L     P        +  +S  ++ Q  + G+G
Sbjct: 180 RKVEDLAKHTLLGFTQ--PESLNVWPILGADGEPCRIE--PGIWSSSGETLRQLALEGTG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  L D++   +     LV+++          +   Y      + ++ +F +++  
Sbjct: 236 VVCLSDFMTAQDREAGRLVQVLARQTLDVEQPINAVYYRNTAISSRIASFVDYMIE 291


>gi|206562326|ref|YP_002233089.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038366|emb|CAR54323.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 309

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 121/272 (44%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     ++
Sbjct: 24  RQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTDQM 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E    P+G+LRI        +     L  F   YP IQ+ +I++++ +D   +  D A 
Sbjct: 84  RELRATPTGRLRIQMLPGFALDHFGKPLAAFNQRYPGIQLDIIVNDRVVDPVEEGFDIAF 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           ++  PI S SLI+R+L T+     AAP Y+     P   ++L +H    +     +    
Sbjct: 144 QIFPPI-SESLIERRLFTVRRLFCAAPAYVDAHGAPQHPRDLLQHTTALYSGYPSRN--- 199

Query: 205 FNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIME 260
             W  T    + E  +  + + NS   + +Y + G G+  LP  +  D      LV I+ 
Sbjct: 200 -RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPILT 258

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D      +    YP   +   K+KA   F+  
Sbjct: 259 DYQLAPLSFAAVYPATQRQALKVKALVEFLAE 290


>gi|22125027|ref|NP_668450.1| transcriptional regulator LYSR-type [Yersinia pestis KIM 10]
 gi|45440992|ref|NP_992531.1| LysR family transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808545|ref|YP_652461.1| LysR family transcriptional regulator [Yersinia pestis Antiqua]
 gi|108811198|ref|YP_646965.1| LysR family transcriptional regulator [Yersinia pestis Nepal516]
 gi|145599959|ref|YP_001164035.1| LysR family transcriptional regulator [Yersinia pestis Pestoides F]
 gi|149365274|ref|ZP_01887309.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|153947011|ref|YP_001401960.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|162420915|ref|YP_001606384.1| LysR family substrate-binding transcriptional regulator [Yersinia
           pestis Angola]
 gi|165925201|ref|ZP_02221033.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165937114|ref|ZP_02225679.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166008126|ref|ZP_02229024.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166214573|ref|ZP_02240608.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167399008|ref|ZP_02304532.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167422574|ref|ZP_02314327.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423302|ref|ZP_02315055.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170025296|ref|YP_001721801.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|218929873|ref|YP_002347748.1| putative LysR family transcriptional regulator [Yersinia pestis
           CO92]
 gi|229838381|ref|ZP_04458540.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229895885|ref|ZP_04511055.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Pestoides A]
 gi|229898947|ref|ZP_04514091.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229901430|ref|ZP_04516552.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|270489618|ref|ZP_06206692.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294504618|ref|YP_003568680.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|21957875|gb|AAM84701.1|AE013715_3 putative transcriptional regulator LYSR-type [Yersinia pestis KIM
           10]
 gi|45435851|gb|AAS61408.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108774846|gb|ABG17365.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|108780458|gb|ABG14516.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Antiqua]
 gi|115348484|emb|CAL21421.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis CO92]
 gi|145211655|gb|ABP41062.1| LysR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149291687|gb|EDM41761.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|152958506|gb|ABS45967.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353730|gb|ABX87678.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis Angola]
 gi|165914977|gb|EDR33589.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165922808|gb|EDR39959.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165992508|gb|EDR44809.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204247|gb|EDR48727.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166958588|gb|EDR55609.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051512|gb|EDR62920.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057472|gb|EDR67218.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169751830|gb|ACA69348.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
 gi|229681359|gb|EEO77453.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|229687892|gb|EEO79964.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229694747|gb|EEO84794.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229700808|gb|EEO88837.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Pestoides A]
 gi|262362677|gb|ACY59398.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis D106004]
 gi|262366604|gb|ACY63161.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis D182038]
 gi|270338122|gb|EFA48899.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294355077|gb|ADE65418.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|320016245|gb|ADV99816.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 297

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L+ F VVAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNELQSFLVVARERSFTKAAGKLGVSQSALSHAIKGLEERLNLRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++          LE     L + +   SG +R++      ++LL   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRLADLEQELETLLQLNGTVSGNIRLSAGEHAARSLLWPKLKPFLRKYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  ++I     D  +RL + +    +  +    + M    +P Y      P++ 
Sbjct: 125 VELVVDNGFVNIVDGRFDAGVRLGESVDKDMIAVKIGPEMRMAVVGSPEYFMANAIPVTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L +N     +     G G+A
Sbjct: 185 HELQHHRCINM--RLPTAGGLYHWEFEKEGKPLRVKVEGQLTLNILPERIDAAQSGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  ++    +  L++++E         Y  YP   ++        + +
Sbjct: 243 CVPEDSIQAFLRSGKLIQVLEAWCPSFPGYYLYYPSRKQHPPVFALMIDAL 293


>gi|190573959|ref|YP_001971804.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011881|emb|CAQ45502.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 305

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 139/291 (47%), Gaps = 10/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  +G F+ AA  L ++ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFVRVIETGGFSAAARTLEMTPSAVSKLVARLEQRLGTRLLQRSTRQLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V   L+  +     +  +P G+LR+ + +  GQ+ L   L  FL   P + + L
Sbjct: 71  YERGLRVLADLDEAER-CASAHAEPRGRLRVNSNVPFGQHFLLPLLPAFLQRNPQVGVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ ID+     D A+R   P++SSSL+ R+L    M   AAP Y +    P + +EL
Sbjct: 130 TLNDEVIDLLEQRTDVAVRAG-PLKSSSLVARRLGATRMMIVAAPAYAQRHGLPRTAEEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +  G    + M+ +  L      +  P  +  + ++  ++ Q  + G G+A L  
Sbjct: 189 QSHNRLDIGHA--RAMQGWPLLQDGRERMLLPSGNA-RASTGDALRQLVLGGLGMARLAA 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFL 292
           + V+ +     L+ ++E+        V+  +  +      +++AF +F+  
Sbjct: 246 FQVQQDIAAGRLLPVLEEANPGDLEEVHAVFLGQGGYLPLRVRAFLDFLVE 296


>gi|152970370|ref|YP_001335479.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955219|gb|ABR77249.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 310

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 124/296 (41%), Gaps = 12/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D+  L++F  V  + SF+  A +  +S S ISR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   SVDFRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  +    Q  LQ+ +  P G +RI   +  GQ  +   L E    +P 
Sbjct: 66  AGRFFAASARELLGQYADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELAARHPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q  L L +  ID   D  D   R+   +  +    R   +   +  A+P Y+     P 
Sbjct: 126 LQFDLTLTDDFIDPHRDATDILFRISS-LPDAGYHARVFGSQRYYLTASPEYVSRYGSPT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L +H  + +G         F         +  P    +  N+  +++   + G GI
Sbjct: 185 SPEALHQHRTLVYGGSQGANRWLFRQREEA--WVHYPLTPLMTSNNADALLTSAIGGMGI 242

Query: 242 ALLPDYIVK---DNPNLVRIMEDV-----ITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD++V     N  LV +M+        TPS+ +   YP     +  ++   ++
Sbjct: 243 VLFPDWMVSGALHNGTLVTLMDRYSAAISHTPSY-IAAIYPYTRHPSLNVRTVIDY 297


>gi|153006064|ref|YP_001380389.1| LysR family transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029637|gb|ABS27405.1| transcriptional regulator, LysR family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 304

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 123/292 (42%), Gaps = 5/292 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+F   + L  F  VAR  SF  AA  L +S S++S+ +  LE  +G+ L  R +R + L
Sbjct: 1   MAFTPLNALNSFIAVARHRSFAAAARHLGVSTSALSQSVRQLEARLGVTLLTRTSRTVAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G +L         +   +   +   + + +G++R++     G  +L   L  F+  +
Sbjct: 61  TDAGQRLLENAGGAVDQALESLKTVTVRAGEVTGRVRLSVPASAGALVLARLLPRFIERH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++++ ++N+ ++I  +  D  IRL + I+   +  R           AP YL     
Sbjct: 121 PKVEVEVQVENRFVNIIAEGLDAGIRLSEAIERDMVQVRLTEPGRFVVAGAPSYLARRGT 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   Q+L +H+ I     +      +  L    +    P    +  N    +    V G 
Sbjct: 181 PQKPQDLLQHDCICIRTSLRGARYAWE-LERGRKTWRVPVEGTVTTNDTALMRLLGVAGV 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+  + +  + D     +L  ++E         +  +P   + +  L+AF +
Sbjct: 240 GLLYMFEPELADELRRGSLRLVLEPYAAAVPGFFLYFPSRAQVSPALRAFVD 291


>gi|270263853|ref|ZP_06192121.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042046|gb|EFA15142.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 308

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 129/287 (44%), Gaps = 5/287 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T +G+  +
Sbjct: 1   MRIFTRIVELGSFSRAAERLQLPRATVSNVLKRLEQRLGVRLLIRTTRQVQVTSEGTLYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++   LE          ++PSGK+RI     L + ++   L +F   YPDI + L 
Sbjct: 61  QRCVQLLGALEEADTLFSRHKLQPSGKVRIDMPHSLAREIVIPALDDFYRRYPDITLALG 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  +D+  +  DC +R  +  +  SL+ R++  +     A+P YL     P SI +L 
Sbjct: 121 ANDTHVDLLREGVDCVLRAWE-TEDDSLVARRIAMLPQLTCASPGYLAAFGVPQSIDDLR 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  + +  L         +     +       + L V+   +    C  G G+     Y
Sbjct: 180 QHRAVGYFSLANNRDYPLEFYRN-GKVERRELPARLSVSGADAYTSGCRAGMGLIQAAHY 238

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +    +N  LV ++ +   P   +Y  YP       +++   +++ 
Sbjct: 239 SLAPWLENGELVEVLAETPPPPMPIYIMYPPGRFLAPRVRVLIDWLI 285


>gi|260464399|ref|ZP_05812590.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029869|gb|EEW31154.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 300

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 127/290 (43%), Gaps = 6/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF    R  SFT A  +L ++Q+++S  + GLE ++G KLF R  R + LTE G + H
Sbjct: 14  LIVFEAAGRLSSFTAAGRELGMTQAAVSYAVRGLEEKLGAKLFQRRHRQVLLTEAGERFH 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S     +  +  +L+       G + +A +   G   +   L++F    P + +++ 
Sbjct: 74  ADVSLGLSHIRKSAEDLR--LQATGGHVTLAASTAFGSFWMMPRLQQFRDELPGVDLRIQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++D+DI  +     +R   P          L    +   A P+YL     P ++ EL 
Sbjct: 132 TADRDLDIIAEGIPLGVRGGVPRDWPDYHSLSLADEEIFPVAGPNYLAKFGLPETVAELA 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H LI   +   +      W A+    +       L++N Y  ++Q  + G GI+L   +
Sbjct: 192 MHRLIHLEEPYREAPNWDEWFASAGTSLRNAERG-LRINDYALVIQAVMEGQGISLGWRH 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +V+    +  LV + + V+      +  +P+  + +   +  R+++  +A
Sbjct: 251 LVERLVASGLLVPVTDHVLRTGIGFHVIWPKNRELSDNARKVRDWLVAQA 300


>gi|15890118|ref|NP_355790.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15158284|gb|AAK88575.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 116/288 (40%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L VF VVAR  SFT AA +L + QS++S  IS LE ++G+ L  R  R +  T  G 
Sbjct: 6   LRDLAVFEVVARHQSFTDAASELGVKQSTLSYTISQLERKIGVALLARTTRSVAPTGSGL 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L  +       L    + LQE+    +G +R+       +++++  L  F   YPD+  
Sbjct: 66  RLLEILGPALRDLREELLRLQEARETIAGVVRLTMIPVAFESIVRPMLPSFCQRYPDVVF 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA-APHYLKNCREPLSI 183
           ++    +  DI  +  D  IR    +    ++   L        A +  Y +N   PL+ 
Sbjct: 126 EISTSERLDDIVTEGFDGGIRFG-TLIDKDMVALPLTASTPIVIAGSASYFENYPIPLAP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L  H  I +  L    +  +  LA   +         L ++   +I    + G GI  
Sbjct: 185 EHLAGHRCILYRYLSSSRLFRWP-LAKGSQKFEYKGDPALILDDGAAIRSAVMDGLGIGF 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           L    V  +    NL  ++ D +T        YP   + +   +A   
Sbjct: 244 LLRSQVASDLEAGNLREVLTDWLTDLPGFSLYYPSRRRTSPAFRALIE 291


>gi|118591873|ref|ZP_01549268.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118435516|gb|EAV42162.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 303

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 112/293 (38%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     ++   SF  AA +L LS +++S  I  +E ++G++LF R  R ++LT+ G   
Sbjct: 8   ELEAVLAISAQRSFRAAALELGLSTTALSNLIGKVERQLGVRLFNRTTRSVSLTDAGRTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++       +     P G LRI       + +L   +  FL  YP + + L
Sbjct: 68  VEQVAPALREIREATAVARSQQDTPCGTLRINAFATGAREILAPLVLAFLRRYPQVHVDL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + + + +DI  +  D  +R    + S  +             A P Y +    P +  +L
Sbjct: 128 VTEGRVVDIVAEGFDLGVRTADLVPSDMIAVPLGAPRSFAVVATPSYFEEHGSPCAPPDL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I     +P             RP+       + ++         + G GI    +
Sbjct: 188 LAHQCICI--RLPNGAPYRWHFEKGGRPLQIEVAGPITLDDATLARIAVLDGIGIGFFME 245

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             V+D      L R++++   P+  +   YP     +   +AF +     ARD
Sbjct: 246 ADVRDEIAAGKLTRVLKEWTPPTTPLCLYYPGRKNPSAAFRAFIDM----ARD 294


>gi|86356704|ref|YP_468596.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|190892917|ref|YP_001979459.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|86280806|gb|ABC89869.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
 gi|190698196|gb|ACE92281.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 297

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 123/290 (42%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ +R+F  VA++GS + AA +L +   ++SR+++ LE ++ ++L  R A+G   TE 
Sbjct: 1   MDYNAVRMFVAVAQTGSLSSAAARLGVPLPTLSRKVAELEADLKVQLLERTAKGCRPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+L    S     LE  +  +     +  G+LR++             L  F   +P I
Sbjct: 61  GSRLFEQASGGIDLLEEAERAILSEQAQLVGRLRLSLPQSFEPWW--DLLALFQRAHPGI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI +    + +D+  D  D A+R+   I   ++I R ++T      A+P  +     P  
Sbjct: 119 QINVYSTERRVDLLADGVDVALRVGA-IADDTVIARHMLTFRHMLVASPELVAAHDRPEG 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q++ +     +G  +                  +   +    N YL +    + G    
Sbjct: 178 PQDILRLPCAAWGSTLDAQPTW------TLGGQTQKINATFTANDYLHLRARAIAGDVAT 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LP ++  +   +  LV ++ +   P   ++  Y      +  ++A+ +F
Sbjct: 232 ELPSFLAAEYLKSRELVELLPEYPFPETALHLVYKRQRHPSTIVRAYLDF 281


>gi|221066461|ref|ZP_03542566.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220711484|gb|EED66852.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 300

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 132/296 (44%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T A+E L L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLDELQAFVAVVDTGSITAASELLGLTISATSRTLGRLEEKLQTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+   +    +   ++  +  +    ++P+G+LR+        ++L   +  F   YP
Sbjct: 61  EEGATFLQHARAILASVDEAEELMAARRMRPAGRLRVDAATPFMLHVLVPLIAGFRSRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  +   ID+     D A R+   ++ S+L  R +    +   A+P YLK    P
Sbjct: 121 EVELELNSNEGIIDLLERRTDVAFRIG-VLKDSTLHARPVGISRIRVLASPAYLKRHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  +L +H+L+ F    P+ + D+  L   D      R   +  +S  ++ Q  + G G
Sbjct: 180 ASPAQLAQHSLLGFTQ--PESLNDWP-LRDADGNAVRIR-PDIASSSGETLRQMALAGLG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
           I  L D++    ++  +LV++           V   Y        ++  F + +  
Sbjct: 236 IVCLSDFMTRADREQGDLVQLFGKQTLDICQPVNAVYYRNTALAARITCFVDHVVQ 291


>gi|92116369|ref|YP_576098.1| LysR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799263|gb|ABE61638.1| transcriptional regulator, LysR family [Nitrobacter hamburgensis
           X14]
          Length = 305

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 121/287 (42%), Gaps = 6/287 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V   G F  AA  L + +S +SR+I+ LE  +G++L  R  R  ++TE G   +R  
Sbjct: 3   FAQVVDHGGFAAAARALGMPRSRLSRRIAVLEDRLGVRLIQRSTRRFSVTEIGQDYYRHC 62

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +  + +  Q  ++ S  KP G +R++    L    +   +  F+   PD+++ L    
Sbjct: 63  VAMLVEADAAQELIERSRSKPQGIVRVSCPPPLLYFQVGEMVARFMAECPDVEVHLESTP 122

Query: 131 KDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           + +D+  D  D A+R+R  P++ + L+ R L        A+P  LK         +L   
Sbjct: 123 RRVDVIADGVDIALRVRFPPLEDNDLVMRVLAESAQRLVASPALLKRLIRSPVPADLATL 182

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I +G   P    ++      +     P +  L     +++    + G G+   P  +V
Sbjct: 183 PSIGWGP--PHQRHEWCLDGPNEATALIPYVPRLITEDMVALRFAALRGIGVGQFPTMVV 240

Query: 250 K---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           K   D+  LV ++      +  V+  +         ++A  +F+  +
Sbjct: 241 KTDLDSGALVDVLPQWSPRAGIVHAVFSSRRGLLPSVRALLDFLATE 287


>gi|107027789|ref|YP_625300.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693501|ref|YP_839034.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897163|gb|ABF80327.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651501|gb|ABK12141.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 314

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 140/296 (47%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDTGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +ET + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQNARAIIESVETAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R++    +   A+P Y++   +P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGNSRVRILASPDYIEAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++LDKH L+ F    P+ +  +  L T            +  +S  ++ Q  + G+G
Sbjct: 180 RKVEDLDKHTLLGFTQ--PESLNVWPILGTDGEAYRIE--PDVYSSSGETLRQLALEGTG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  L D++   +     LV+++          ++  Y      + ++ +F +++  
Sbjct: 236 VVCLSDFVTAQDREAGRLVQVLARHTLDVQQPIHAVYYRNTAISSRIASFVDYLIE 291


>gi|311103491|ref|YP_003976344.1| HTH-type transcriptional regulator YafC 1 [Achromobacter
           xylosoxidans A8]
 gi|310758180|gb|ADP13629.1| uncharacterized HTH-type transcriptional regulator YafC 1
           [Achromobacter xylosoxidans A8]
          Length = 299

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 135/299 (45%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+++VF  +  SGS T AA+ L  + S+ SR +S LE ++   L  R  R L LT
Sbjct: 1   MKTTLDEMQVFIAIVDSGSITAAADVLGQTVSAASRTMSRLEEKLQTTLMRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   +E ++  +     +P+G+LR+        +++   +  +   YP
Sbjct: 61  EEGRAYLEQARKIVAAVEESEELMSLRRNQPAGRLRVDAASPFMLHVIAPLVPGYRQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +  +ID+     D AIR+ + ++ SSL    L    +   A+P YL     P
Sbjct: 121 QVELELNSNEGNIDLLERRTDLAIRIGR-LKDSSLHAVPLGHSRVRVLASPGYLAKHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGS 239
             + +L  H L+ F  L  + + ++  L    + +  +P +      S  ++ Q  +   
Sbjct: 180 RRVADLASHVLLGFSQL--EALNEWPLLEADGQALHIKPHVRAF---SGETLRQLALNDG 234

Query: 240 GIALLPDYIV---KDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+  L D++    +D+  L +++ +        +   Y      + ++K+F +++    
Sbjct: 235 GVVCLSDFMTRGDRDSGALQQLLVKQTQDVRQPINAVYYRNTAISSRIKSFIDYMVQAL 293


>gi|241663755|ref|YP_002982115.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240865782|gb|ACS63443.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 294

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 128/291 (43%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  VAR+G+   AA++L + Q+++ R+I+ LE E+  KLF R +  L LT  
Sbjct: 1   MNWDNGRFFLAVARTGTLRGAAQRLGVDQATVGRRIAALEDELSAKLFLRTSTALVLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +     T +  +     + +G +R+ATT  +    +   + +    +P I
Sbjct: 61  GEALIGPAEAMEQAAHTIERRVAGIDDQLAGTIRVATTDTMAATFVLPAIAQLRQRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  +      +++   AD A+R  +P  S  LI R++  +    YA+  Y+    EP  
Sbjct: 121 DVVCMASKSIANLTKREADVAVRTLRP-DSPDLIARRIGQMETGIYASRSYVAARGEPEE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+ +    P+    + W      PI   R+  LQ NS L++ +    G G+ 
Sbjct: 180 GTAFAGHDLVLY----PRNEVPWMWEDLCGEPITRGRV-VLQSNSALALCEAVAAGIGMT 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L     +  P LVR++ +       V+      L  T +++A  + I   
Sbjct: 235 ELVCRRAQAYPQLVRVLPN-RRSMQDVWLVTHADLHKTARVRALLDCIVEA 284


>gi|241205836|ref|YP_002976932.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859726|gb|ACS57393.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 298

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 124/297 (41%), Gaps = 11/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F  + LRVF   AR GSFT A  +L ++Q+++S QI  LE  VG  LF R  R + LT+
Sbjct: 6   QFPLNALRVFEAAARLGSFTKAGNELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    +E +  L       ++S     G L I++T       L   L  F L +P 
Sbjct: 66  TGERLAPKVTEAFAMLHDAMATARDS---VEGTLAISSTHTFASKWLAPRLGSFHLKHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++    +  ID   +  D  IR         L   +L+ +      +P   +      
Sbjct: 123 IAVRFQASSDIIDFGREQIDVGIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAETAGGIK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L K +L   GD+  K   +   +   D      R    Q+ S        + G G+
Sbjct: 182 EPRDLLKFDLFDAGDIWWKQWFEAAGITETDLD----RRPRNQLGSQAVEADAAIAGHGV 237

Query: 242 ALL-PDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+L P +   +     L +  E   +     +  YPE  +N  K+KAFRN+I  + +
Sbjct: 238 AILHPAFYTAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWILEEMK 294


>gi|84500441|ref|ZP_00998690.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84391394|gb|EAQ03726.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 307

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 6/289 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SFDW++ R F   A  GS + AA +L  +Q ++ RQ++ LE ++G+ LF R  RGL LTE
Sbjct: 7   SFDWNQARAFLATAELGSLSAAARELGQTQPTLGRQVAALEDQLGVALFDRAGRGLILTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     E+        +     S    G + I  +      LL   + E   + P+
Sbjct: 67  AGRELLSHVREMAEAAARVPLTASGQSQALRGTVGITASDVFSVTLLPPIIAELSRIAPE 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+++  N   D+S   AD AIR  +P +  +L  R L     H YAAP YL     P 
Sbjct: 127 IEIEVVASNDLRDLSRREADIAIRHVRPTE-PALTARLLGEGTGHLYAAPAYLDRRGRPA 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H+ + F D+          L     P+    I   + ++ L++ +    G GI
Sbjct: 186 SRSDLATHDFVGFLDVNRMGRT----LGEFGIPVAARNI-RYRTDNGLAMWEMVRAGLGI 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++   +    P++  +    +   + ++      L +  +++   + +
Sbjct: 241 GVMTADLGLTTPDVELLFPREVAFRYPIWLVTHRELHSARRIRVVYDHL 289


>gi|167566565|ref|ZP_02359481.1| Transcriptional regulator [Burkholderia oklahomensis EO147]
          Length = 301

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQTFATVVDTGSITAAAQQLELTVSATSRTLGRLEKKLQTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  + ++     +PSG+LR+        +++   +  +   YP
Sbjct: 61  EEGRAFLQNARAIIESVERAEEQMAARRERPSGRLRVDAATPFMLHVVVPLVNGYRTRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +++ ID+     D AIR+ + ++ S+L  R + +  +   A+P YL     P
Sbjct: 121 HVELELNSNDEIIDLLERRTDVAIRIGR-LKDSTLHSRAIGSSRLRILASPQYLDVHGNP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +LDKH L+ F    P+ +  +  L     P        L  +S  ++ Q  + G+G
Sbjct: 180 RRVDDLDKHTLLGFNQ--PESLNQWPVLGRDGEPYRIAL--ALASSSGETLRQLALQGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  L D++    +D   LV+++          ++  Y      + ++ +F +++  + +
Sbjct: 236 IVCLSDFMTARDRDEGRLVQLLPRQTREVLQPIHAVYYRNTAISSRIASFVDYLADEMK 294


>gi|78063760|ref|YP_373668.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971645|gb|ABB13024.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 295

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 115/296 (38%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  +   G    A  +  LS +++S +++ LE   G  L  R  R ++LT++
Sbjct: 1   MLLDNLALFLRIVEKGGLAAAGREFGLSPATVSERLTALERHYGAALLTRTTRAISLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  + +  +  ++      SG +R++   DLG+  +   +  FL  +P +
Sbjct: 61  GRTLVDGARRLLAEADELESRVRLGVQTLSGPVRLSAPADLGRERVVPVVDAFLAEHPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+     D AIR R  +  SSL  R L        A+P YL     P  
Sbjct: 121 TVDLHLGDGYVDVVGQGLDFAIR-RGVLADSSLRSRSLGRARRVVCASPAYLAAHGTPQH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L  H+ I          E   W  ++D  +           N    +  +CV G G+
Sbjct: 180 PDDLAAHDCIVMRFGPDLYAE---WPFSIDGELRRVTVRGRRVANDGSLVRAWCVAGHGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL     V+ +     LV ++         +   YP       +++A  + +    
Sbjct: 237 ALKSLVDVEQDLASGALVEVLRAFSPGDVDLQIVYPGNAVQPRRVRALIDRLAQAL 292


>gi|307304356|ref|ZP_07584107.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307322401|ref|ZP_07601759.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306891961|gb|EFN22789.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306902558|gb|EFN33152.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 264

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 11/269 (4%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +  S++SR++S LE  +G++L +R  R + LTE G   +  +  +  +      +L    
Sbjct: 1   MPNSTLSRRVSELEKAIGLRLLHRTTRKIELTEAGQLYYERSKRIVDEARLAHEQLGAML 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
            +PSG LR++  +DL    L   + EF   YP I  +  L  + +D+  +  D AIR+ K
Sbjct: 61  NQPSGVLRVSLPVDLATFYLTPIIGEFARHYPGITFEFDLTPRRVDLVAEPFDVAIRIGK 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            ++ S LI R +     H YA+P Y++   EP +  EL +H  I    L          +
Sbjct: 121 -LEDSGLITRLIGRHSRHLYASPGYIEASGEPATPAELAEHECIGM--LRSPIWSLHQGI 177

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITP 265
             VD  +         +NS   I    V   GIALLP+ IV ++     L RI+ +    
Sbjct: 178 NKVDVAV----RGRFTLNSVGMIRALAVNHQGIALLPEKIVAEDVAFGRLRRILPEWQGS 233

Query: 266 SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +++    E      K + F  F+  + 
Sbjct: 234 AVSIFAVT-ETRLIPAKTQRFIEFLSSRL 261


>gi|71278222|ref|YP_271560.1| LysR family substrate binding transcriptional regulator [Colwellia
           psychrerythraea 34H]
 gi|71143962|gb|AAZ24435.1| substrate-binding transcriptional regulator, LysR family [Colwellia
           psychrerythraea 34H]
          Length = 291

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 121/288 (42%), Gaps = 14/288 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L +F  VA   SFT AAE+L++S+  +S QI  LE ++ + L  R  R + LT +G 
Sbjct: 8   LERLMLFSEVAEHLSFTAAAEKLNVSRGHLSSQIKRLEQDMEMVLLIRSTRSVRLTPEGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++    +++ H L   +   +    K  G+++I       +  L     +F  L+P I+ 
Sbjct: 68  RVLTGMNKIRHDLLELERSAEHEGNKIEGRIKITAPGGFAERFLFDIFSQFKQLHPAIEF 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L       D++    D A R        +++ + L++      A+P Y  +   P +  
Sbjct: 128 SLNCSYTRFDLNRSDFDFAFRATSE-PPQNMVAKHLMSYQHCCCASPKYFDSKGVPKTPA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +       K  E   W    +    +     L+VN    +    +   GI  +
Sbjct: 187 DLINHECL-------KGQEQTTWQFQQEAVQTQ---GWLEVNDNNMLKGLALADKGIIRV 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P Y+V     +  L  I E+ +     +Y  +P+ +  + ++  F NF
Sbjct: 237 PKYLVDKEVKSGKLKTIFEEKMPSGSMIYIIHPQRIHPSKRISTFLNF 284


>gi|76812008|ref|YP_333519.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|76581461|gb|ABA50936.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
          Length = 773

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 11/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  V   G+FT AA  L L+ +++S  I  LE+E+ +KLF R  RG++LTE G + +
Sbjct: 478 LHVFMSVVTHGNFTRAAAALGLTPAAVSLAIGQLESELKVKLFSRSTRGVSLTEAGQRYY 537

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T++ Y ++   +  L ++  +P G LRI+        +    L EF   YP + +++ 
Sbjct: 538 DATAQPYRQVVDARDALNDARDEPEGLLRISALHLAKSVVTADVLAEFFRRYPKVSVEIR 597

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++  +DI  +  D  IRL   +QS  +  +    +     A P YL     P  + +L 
Sbjct: 598 YEDHLVDIVKERLDAGIRLADRLQSGMVGVKIAPALTCALVATPGYLAQHGVPSKLADLA 657

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  I F    PK      W     R   E  +          +++     G+GIA +  
Sbjct: 658 RHMCIRF--RFPKSGRLHKWPLRDGRRDVELDVAGRFVSTDTGAVIDAARAGAGIAFV-- 713

Query: 247 YI---VKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++   ++D+     L  ++         ++  Y        KL+AF   +   A
Sbjct: 714 FMRERIEDDLRRGTLREVLPGACRTLPPMWLYYANRKHVPPKLRAFIAVLREHA 767


>gi|152971622|ref|YP_001336731.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956471|gb|ABR78501.1| putative transcriptional regulators, LysR family [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 295

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 132/295 (44%), Gaps = 5/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  +GSFT AA  L  +++ +S  +  LE E+G+ L  R  R L LT+ 
Sbjct: 2   LNLQRVTMFIAVVDAGSFTLAAAALGQTKAVVSFNVRQLENELGVTLLLRSTRRLRLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  E  Q E++ S    SG+LRI TT + G  ++   L  F   +P +
Sbjct: 62  GVLFYQRGVALLNAAENLQDEVRASHSGLSGELRITTTPEYGAQVIIPALAAFARRHPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ +  +   D+  +  D AIRL   +  S     ++ +  +   A+P +L +     +
Sbjct: 122 RVRHVSSSHHADLISERFDVAIRLG-TLADSRYRATRIASFAILPVASPAWLASHPV-QT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +   I    L              +             +S  ++M + + G G+A
Sbjct: 180 LSDLAQAEWIIHERLPTPLRWQLRTDHQTEVDFAIASAPRFSADSATALMSFALAGCGVA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP ++V        LV ++ +   P   VY  YP++     +++AF +F+  K 
Sbjct: 240 LLPAWLVAKKVAQRELVPLLPEYHFPQQGVYALYPDSQHLPTRVRAFIDFLREKV 294


>gi|86136547|ref|ZP_01055126.1| probable transcriptional regulator [Roseobacter sp. MED193]
 gi|85827421|gb|EAQ47617.1| probable transcriptional regulator [Roseobacter sp. MED193]
          Length = 291

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     ++ +F      GSF  AA+ L LS S +S  I+ LE  +G+ L YR  R L+LT
Sbjct: 1   MLDHLRQVAIFAKTVDHGSFRAAAQALRLSPSVVSHHITQLEHHLGVALLYRSTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L      +    ET    + + + +PSG+L+I     L Q+ +   + +F   YP
Sbjct: 61  RDGERLIGSARAMLEAAETGLQAVSDQAAQPSGELQITIPAALAQSHVVDRIAQFTATYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L   +   ++  D  D A+R+   ++ SSL  RKL  +  +  AA  Y+    +P
Sbjct: 121 AVRLTLDFSDLRREVIADGIDVALRMGW-LEDSSLKARKLFDVQRYLIAAQSYVDQRSKP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  +L   + +T   +         +       I       L VN   ++      G+G
Sbjct: 180 ESPNDLQDWDWLTLAQVGLTT----EFRTEGKHVITLKPNPRLSVNDAHALYHLARSGAG 235

Query: 241 IALLPDYIVKDNPN--LV-RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +AL+P+Y+  ++    LV R++ D    S  VY  +P      G    F NF+  K
Sbjct: 236 LALVPEYLTHEDIAAGLVRRVLPDWNVASVGVYAVWPPNAPKEGLSALFINFLAKK 291


>gi|127511402|ref|YP_001092599.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126636697|gb|ABO22340.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 314

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 143/296 (48%), Gaps = 15/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + + +F+ +  +GS   AA+ L++ +S++SR++  LE E+ +KLF+R +R +TLT  
Sbjct: 1   MKTEDIALFHRIVETGSLVEAADILNVPKSTLSRRLQTLEDELNVKLFHRQSRAMTLTAS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +  T+ +   LE T  EL       +G LRI          +   + EF+ L P +
Sbjct: 61  GSHFYNKTTPLLATLEQTFSELSGKEAAVTGHLRILIFPIPELLYITQAIFEFMDLNPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I+ ++  D+  +  D A  L      + ++ R +++  +H +A+P YL+   +P  
Sbjct: 121 TVEIIVSSEPKDMIRNNIDLAFMLEDAFNENEMVARHIISEFVHFFASPEYLERAGKPTK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLG 238
            +EL +HN I F     +           + P G+ RI      L VNS  + ++  ++G
Sbjct: 181 PEELPEHNSILFRYPNGRIFN--------EVPFGKDRILSVTGNLCVNSLSTCLEAALMG 232

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GIA++P  I +   +N  LV + ED+       +  YP     +   + F + + 
Sbjct: 233 RGIAMMPLPIAREYVENGKLVMLFEDIEPYEGKCFLVYPSRRFISLASQRFIDHVL 288


>gi|170735055|ref|YP_001774169.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821093|gb|ACA95674.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 300

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++  F  +A +GS T AA++LH   S +SR +  LE ++   L  R  R L +T
Sbjct: 1   MKTTLDEMLAFVTIADTGSLTGAADKLHQPTSVMSRILRRLEEKLDTTLIRRTTRRLEMT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        E+   +E  + ++      P+G+LRI   +   Q+++   +  F   YP
Sbjct: 61  EEGKLFLDYAREIIASVEFAEEQIVSQREAPAGRLRINAAMPFMQHVIAPMMPGFRDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+ +L   ++ ID+     D AIR+ + ++ S+L  R+L +  +   A+P YL+    P
Sbjct: 121 AIEAELHTSDEIIDLLEHRTDVAIRIGE-LRDSTLHARRLGSSRLRILASPAYLQKAGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H L+ F  + P+ +  +      D          LQ  S  +++   + G+G
Sbjct: 180 ASVADLANHTLLGF--VQPETLNHWPLRTADDGVYRIH--PALQAASGETLLTLALNGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  L DY+    + + +LV ++ +D +     ++  +      + ++ +F +++  + +
Sbjct: 236 VVCLADYMTGTHRRDGSLVELLVDDTLEFRQPIHAVFYRNTTLSSRIVSFLDYVSAQLK 294


>gi|238023779|ref|YP_002908011.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878444|gb|ACR30776.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 330

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 125/290 (43%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  +  F  +  SGS + AA  L  +Q ++SR++  LE  +G++L +R    + LT  G 
Sbjct: 29  FQLMETFVRIVESGSLSAAAVLLRTTQPTVSRRLQALERSLGVRLLHRSTHTMRLTVDGE 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +   ++     + + +L+ +  +P G LR+      GQ +    L  FL  +P + +
Sbjct: 89  RAFKRAKDLLASWASFEADLRGAQQEPEGPLRVTVPHAFGQEIFVEPLLRFLREHPRVTV 148

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D   +  DCAI++ +P    +++  KL ++     AAP  L     P S +
Sbjct: 149 EWLLQDEVHDFIGNGIDCAIQIGRP-TDPAVVAIKLASVSRIVVAAPSLLGGGPLPASPE 207

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCVLGSG 240
           EL     ++            N +A   R  GE R       +  ++  ++    + G G
Sbjct: 208 ELATLAWLSLRTYYR------NEVALTHRGTGETRRFTIQPRMSTDNLFAMRSAMLHGMG 261

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           + +   +++ D+     LVR+  +        Y  YP A     +L  F 
Sbjct: 262 VGISSAWLLADDLAAGRLVRLAPEWQAAPLPAYLTYPHARFYPSRLLRFV 311


>gi|212634198|ref|YP_002310723.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212555682|gb|ACJ28136.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 301

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 134/301 (44%), Gaps = 20/301 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   +  F  +  +GSF+ AA++L +  +++SR+++ LET +  +L  R+ R L LTE+
Sbjct: 7   LELQLIYQFVHLVNAGSFSQAAKELEMPIATVSRKLTKLETLLDKQLLMRNTRKLRLTEE 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    +  + ++ +     +   P G LRIA  + +   +    + EF   YPDI
Sbjct: 67  GIALFQQYQAIVSQFDSIR---GAAVDTPEGTLRIAAPVSIISMIFINAINEFCEKYPDI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ ++ +N  ID+  +  D AI +      SS I   L  ++   +A+P Y+ +      
Sbjct: 124 QLHIVQNNNVIDLIDEGVDVAI-VGGTQPDSSWISSSLGVLNYGLFASPGYIASAAPFTH 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLG 238
             ELD H LI       K    FNW  T+  P GE       + L ++     ++  V  
Sbjct: 183 PSELDNHALI-------KVWPLFNW--TLKHPSGESFYYDGPAKLTLSELNGAVRAAVDN 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI   P   VK   ++  L  ++ + I     +   Y +      K+K F  F+  KA 
Sbjct: 234 GGILYGPALFVKNELNSGQLQSLLPEWIGEKRRISILYHQRSHQPLKVKLFIEFMHSKAE 293

Query: 296 D 296
            
Sbjct: 294 Q 294


>gi|329115402|ref|ZP_08244156.1| Putative transcriptional regulator [Acetobacter pomorum DM001]
 gi|326695381|gb|EGE47068.1| Putative transcriptional regulator [Acetobacter pomorum DM001]
          Length = 300

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 126/289 (43%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L     VAR+ SFT AA +L +SQS++S  I  LE  + ++L  R  R +T T  G
Sbjct: 5   NLNDLTALVAVARAKSFTKAAAKLGVSQSALSHTIRLLEERLDLRLLTRTTRSVTPTTAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    ++E   I L E   + SG LRI    D    ++   +KEF+  YP I 
Sbjct: 65  QQLISGIAPHLDQIENQLISLGELRNQESGNLRITMPDDALAYVVLPKIKEFVQKYPKIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D K IDI  +  D AIRL + I            I      +P Y     +P   
Sbjct: 125 VEFVADLKLIDIFSEDFDGAIRLGENITKEMTSVPITPDIRFVVAGSPEYFSKNPKPKHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  HN +T    +P     + W      + I       L  NS   I   C+ G G+A
Sbjct: 185 KDLLNHNCLTL--RLPTHGRIYAWEFEKKGKDITVKVEGSLIFNSIFPIRDACLEGLGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P+ + +       L++++ED        + C+P   +N   L  F +
Sbjct: 243 HMPEMVARKYIQEGRLLQVLEDWCPYWSGYHLCFPRHHENVAPLSLFID 291


>gi|160896430|ref|YP_001562012.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362014|gb|ABX33627.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 324

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 120/304 (39%), Gaps = 17/304 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+ + GSFT AA +L +S++++S++++ LE   G+ L  R  R + LTE G 
Sbjct: 14  WSHLHWLVVLEQQGSFTSAAARLGVSKAAMSQRVAELERAAGVALVTRTTRSVRLTEAGQ 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T   +  +  +   +++ + +P G LR+   +   +  L   L  FL  +P I++
Sbjct: 74  RLVDETRGAFEHIADSFAGVRDLAAEPRGLLRVTAPVAFSRQQLMPRLPAFLRAHPQIRL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +    ++M+  D A+R        + +   L        A+  YL     P + Q
Sbjct: 134 ELDLSDHLRSLAMEGFDIAVR-HASTPPETHVAWALAPTRSLLVASTDYLAAHGTPATPQ 192

Query: 185 ELDKHNLITFGDLIPKCMEDF----------NWLATVDRPIGEPRISCLQVNSYLSIMQY 234
           +L  H  + +          F             +        P       N+   +   
Sbjct: 193 DLAAHQCLHYPRTQGAMAWSFVPAYAGAYAGADASADAVRTVVPVAGGFAANNSEMLRDA 252

Query: 235 CVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRN 288
            + G GIAL+PD+  +    + +L  ++            ++   P A      +  F  
Sbjct: 253 AMAGLGIALVPDFSAQSGLASGHLREVLPGWRPVDAFGEQLFAIRPYASHVPRAVAVFVE 312

Query: 289 FIFL 292
           F+  
Sbjct: 313 FLRA 316


>gi|307544103|ref|YP_003896582.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307216127|emb|CBV41397.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 315

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 125/290 (43%), Gaps = 3/290 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  +++F  VARS     AA +L L  S++SR+    E  +  +LF R   G  LTE 
Sbjct: 2   LDWQDIQIFLEVARSQRLADAARRLGLDHSTLSRRTRRFEQRLNTQLFERSTHGYHLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L     E+          L +   + SG++R+  T   G  ++   L  F   +P +
Sbjct: 62  GHRLLAHAEEMARHAFEASESLTDQDHRISGQIRLGVTEGFGTWVIAPLLAAFCDRHPGV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+   + +++S   AD AI + +P  S  L+  +L    +  Y +  YL     P  
Sbjct: 122 TLDLLALPRVVNLSRHEADLAITIERP-SSPGLVISRLCDYRLRLYGSQDYLHRHGTPRR 180

Query: 183 IQELDKHNLITFGD--LIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + +L +H LI + D  +  + +   + L              ++  S  +    C+ G+G
Sbjct: 181 LADLGQHRLIGYIDDLIFSEQLNYLDPLLDPAVIGHPGPHFAMRGTSVTTQHSACLRGAG 240

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++    P L  ++ D +      +    +  +   +++   +F+
Sbjct: 241 LAVLPCFMGTTTPTLSSLLVDEVDIVRQFWITARQEQRRLARVRLLWDFL 290


>gi|51595399|ref|YP_069590.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 32953]
 gi|186894422|ref|YP_001871534.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|51588681|emb|CAH20291.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186697448|gb|ACC88077.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
          Length = 297

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L+ F VVAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G
Sbjct: 5   NFNELQSFLVVARERSFTKAAGKLGVSQSALSHAIKGLEERLNLRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++          LE     L + +   SG +R++      ++LL   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRLADLEQELETLLQLNGTVSGNIRLSAGEHAARSLLWPKLKPFLRKYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  ++I     D  +RL + +    +  +    + M    +P Y      P++ 
Sbjct: 125 VELVVDNGFVNIVDGRFDAGVRLGESVDKDMIAVKIGPEMRMAVVGSPEYFVANAIPVTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            EL  H  I     +P     ++W      +P+       L +N     +     G G+A
Sbjct: 185 HELQHHRCINM--RLPTAGGLYHWEFEKEGKPLRVKVEGQLTLNILPERIDAAQSGFGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  ++    +  L++++E         Y  YP   ++        + +
Sbjct: 243 CVPEDSIQAFLRSGKLIQVLEAWCPSFPGYYLYYPSRKQHPPVFALMIDAL 293


>gi|167741297|ref|ZP_02414071.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
          Length = 293

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 117/289 (40%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V   GSF  AAE   +S + ++++I  +ET +G +L +R  R   L++ G   +
Sbjct: 1   MEMFVRVVECGSFAAAAEASEVSATMVAKRIQAIETRLGARLLHRTTRRQQLSDVGQLYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++E  +    E    PSG LRI   +  G   L   L E++ L+P +++ L 
Sbjct: 61  ERCRRALAEVELAESSAAELHATPSGVLRIVAPVGFGSYSLVPALAEYMALHPQVRVDLT 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN       D  +  + +   I +  L+ R L        AAP YL     P   ++L 
Sbjct: 121 LDNDAPRFWQDDFELGVHIGD-IDAPGLVARPLKPYRRRLAAAPAYLARHGAPKRPEQLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H  +       +  + +  +                 N   ++    + G GI L P  
Sbjct: 180 EHVCLGLS--YWRRRDRWRLVGPRGEVRDVAVRGGFTANHGDALRVAALQGLGIVLQPQA 237

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++    D   LV ++         ++  Y +  + T KL++  +F+  K
Sbjct: 238 VLMGDLDAGRLVPVLPAWSLAPSPMFLVYAQDRRPTAKLRSAIDFLLAK 286


>gi|325525084|gb|EGD02979.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 290

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 129/287 (44%), Gaps = 8/287 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA+ L + Q+++ R+++ LE ++G  LF R ++G   T  
Sbjct: 1   MNWDDARVFLAIHRERTLRRAAQTLGVDQATVGRRLATLEHQLGATLFLRSSKGYLPTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +           Q    + +G +++ TT  L    +  ++      +PD+
Sbjct: 61  GELALRAAEAMEQHAHELVRLTQGVDRRLAGDVKVTTTDALAIEFVMPSIARLHAKHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L    + ++++   AD A+R  +P  +  L+ R+L    M  +A+P YL+   EP  
Sbjct: 121 CVSLNTSTQVLNLAKREADIAVRTVRP-ANPDLVARRLARWDMGLFASPDYLQRHGEPTR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+ +   I          A    PIG+ RI   ++NS L +      G GI 
Sbjct: 180 GTAFAGHDLVVYQPYIDASRRP----AIAGEPIGDARIVA-RMNSSLMMRAALRAGLGIG 234

Query: 243 LLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P Y+ + +  LVR+    +    + V+      L++T +++A  +
Sbjct: 235 EIPVYMGERDG-LVRVWPGQLREAPYEVWLVTHRDLRHTARIRATID 280


>gi|83592396|ref|YP_426148.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83575310|gb|ABC21861.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 311

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F  VAR GSF  AA++  +S S++S  +  LE  +G++L  R  R L  TE G 
Sbjct: 6   LADLDAFAAVARLGSFRKAAKERGVSPSALSHCVRRLEDRLGVRLLNRTTRSLAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L          +E    E+     +P G+LR++         L   +  F  LYP++ +
Sbjct: 66  RLLDRLGPALSSIEGALSEIDGFRDRPFGRLRLSVPRSAAAFALAPLVARFTRLYPEVDL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  D+  +D+     D  +R+ + I    +       + +    AP  L          
Sbjct: 126 EVEADDGLVDVVAAGFDAGVRIGENIALDMISLPLGPPLRLVIVGAPSLLAGAPPLTDPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +   I F    P+ +  +  L    R +       L VN +  +++    G+G+A +
Sbjct: 186 DLRRFPTIAF--RFPEGVYRWE-LEKAGRRVTVDPTGPLCVNDHTLLLEAASAGAGLACV 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                 D   +  L  ++ED       +   YP     T  L+AF   + L A
Sbjct: 243 LRPRAADWLADGRLRPVLEDWCPAFPGLRLYYPSRR-MTAALRAFIETLRLGA 294


>gi|170699210|ref|ZP_02890262.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135870|gb|EDT04146.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 314

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 136/296 (45%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDSGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  + ++      PSG+LR+        +++   +  +   +P
Sbjct: 61  EEGRAFLQDARAIIESVENAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVHGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R++    +   A+P YL+   +P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGNSRLRILASPAYLEAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H L+ F    P+ +  +  L     P        +  +S  ++ Q  + G+G
Sbjct: 180 RKVEDLARHTLLGFTQ--PESLNVWPILGADGEPCRIE--PAIWSSSGETLRQLALEGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  L D++   +     LV+++          +   Y      + ++ +F +++  
Sbjct: 236 VVCLSDFMTAQDREAGRLVQVLARQTLDVEQPINAVYYRNTAISSRIASFVDYVIE 291


>gi|50122555|ref|YP_051722.1| LysR family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613081|emb|CAG76532.1| LysR-family transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 305

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 130/297 (43%), Gaps = 6/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V    SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+
Sbjct: 4   ALDFNTLKVFTAVVERESFVGASKVLEMPTSNVSRCISQLEEKLNLQLIERSTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   YPD
Sbjct: 64  AGHLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVVADFACQYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  + +    +   D  D AI + R  +  S  I R LVTI     AAP  ++    P
Sbjct: 124 LEISCVTNLSGFESLRDDLDLAIIITRGQMDDSDYIARHLVTIPCTIVAAPSVIQRYGTP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             IQ+ ++   IT    +      + ++ T             +VNS     +  V G G
Sbjct: 184 SHIQQFEELPCITTVSALKGA--PWQFVNTKGGFETIKVKGHYRVNSGEMAGRAAVSGVG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            A+L     +   D+  L+ +  +       ++  Y +      K ++  +FI  K 
Sbjct: 242 FAILSKQACQPYIDDGRLIEVEFEQSVAPLQLFAIYSDRRYLPAKTRSLIDFIHQKL 298


>gi|299772099|ref|YP_003734125.1| transcriptional regulator [Acinetobacter sp. DR1]
 gi|298702187|gb|ADI92752.1| transcriptional regulator [Acinetobacter sp. DR1]
          Length = 297

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 121/294 (41%), Gaps = 11/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +A+ G+ T AAE L+ S++ +SR +  LE     +LF R+ R ++LT 
Sbjct: 1   MDTLKAIQVFVSIAQHGNLTKAAEHLNYSRAMVSRYLEHLEHTFSTRLFQRNTRKISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K       +  + +  Q     +  + +G +R    + L Q  +   +++F   +P 
Sbjct: 61  AGEKALLYCENILQQQQLLQEL--AAPEQHNGTIRFTCGLFLFQLGVGECIRQFKEQHPH 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ  + L    +D+     D A+R+ + +    LI R +  I     A P YLK      
Sbjct: 119 IQFDVYLTENTMDLIDAQVDLALRITQKVAD-GLIARPVCQIESVFCAHPDYLKQHSPLS 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  +          + +       +P   P     + N   ++   CV   G+
Sbjct: 178 HPRQLIQHECLAHHS----QHQFWTLFDEEQQPQNYPLNVTFKSNDVNAVYDMCVHAQGV 233

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP  ++K +     LV + ++   P  ++   Y          + F  F+  
Sbjct: 234 AMLPSLLIKKDLKEKRLVPLFKNFSAPELSLSVVYASRQHLPKITQEFIAFMIE 287


>gi|107027166|ref|YP_624677.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691442|ref|YP_836975.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896540|gb|ABF79704.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649442|gb|ABK10082.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 293

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 120/296 (40%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  +   G    A  ++ LS +++S +++ LE   G  L  R  R ++LT++
Sbjct: 1   MLLDNLALFLRIVEKGGLAAAGREVGLSPATVSERLTALERHYGAALLTRTTRAISLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  + +  +  ++      SG +R++   DLG+  +   +  FL  +P +
Sbjct: 61  GRTLVDGARRLLAEADELESRVRLGVQTLSGPVRLSAPADLGRERVVPVVDAFLADHPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+     D AIR R  +  SSL  R L        A+P YL     P+ 
Sbjct: 121 TVDLHLGDGYVDLVGQGLDFAIR-RGTLADSSLRSRSLGRARRVVCASPAYLAAHGAPMH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H+ I          E   W  ++D  +           N    +  +C+ G GI
Sbjct: 180 PDELAAHDCIVMRFGQELYAE---WPFSIDGVLKRVVVRGRRVANDGALVRAWCIAGHGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL     V+ +     LV I+ D       +   YP ++    +++A  + +    
Sbjct: 237 ALKSLVDVERDLASGALVEILRDFSPGEVDLQIVYPGSVAQPRRVRALIDRLAQAL 292


>gi|327480535|gb|AEA83845.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 297

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 137/294 (46%), Gaps = 6/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  VAR+G  T AA +L +  +++SR++  LE  +G++LF R   G  LTE 
Sbjct: 1   MDWDNLRYFLEVARAGRLTTAARRLAVDHTTVSRRLQALEKSIGLQLFLREPGGYKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +       +  L       SG++RI  T   G  +L G L      YP +
Sbjct: 61  GRNLLPRVEAMESASVAIEHSLPSMGDGLSGQVRIGATEGYGTVMLAGQLTGLSRRYPHL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L+   + + +S   AD  I L +P +   +I R L    +  YA+P YL       S
Sbjct: 121 NIDLLALPRAVRLSRHEADIVITLERPERGPFIITR-LTDYVLRLYASPAYLDEHPPIRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  +++ D +      F+        I +PR   L+  S L+  +   +G+GIA
Sbjct: 180 REDLAEHRFVSYVDDL-----LFSKELLFLDGIADPRSVGLRSTSLLAQQEAVAMGAGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +LP +    +P L  ++ + ++ + T +   P   K+  +++   +++   A+ 
Sbjct: 235 ILPAFSADADPRLRLLLPEEVSFTRTFWMLMPIEFKDLARMRTTWDYLKEMAQQ 288


>gi|221199018|ref|ZP_03572063.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205278|ref|ZP_03578294.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175069|gb|EEE07500.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181469|gb|EEE13871.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 309

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 119/271 (43%), Gaps = 7/271 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     ++
Sbjct: 24  RQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTDQM 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E    P+G+LRI        +     L EF   YP IQ+ +I++++ +D   +  D A 
Sbjct: 84  RELRATPTGRLRIQMLPGFALDHFGVPLAEFNRRYPGIQLDVIVNDRVVDPVEEGFDIAF 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           ++  PI  S LI+R+L  +     A+P YL+    P   +EL +H    +     +    
Sbjct: 144 QIFPPISDS-LIERRLFVVRRLFCASPAYLEAHGAPQHPRELLQHTTALYSGYPSRNRWT 202

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261
              L   D  +       ++ NS   + +Y + G G+  LP  +  D      LV I+ D
Sbjct: 203 ---LTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPILTD 259

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +    YP   +   K+KA   F+  
Sbjct: 260 FQIAPLSFAAVYPATQRQALKVKALVEFLAE 290


>gi|161523096|ref|YP_001586025.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348079|ref|YP_001941275.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221212138|ref|ZP_03585116.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|160346649|gb|ABX19733.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189338217|dbj|BAG47285.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221168223|gb|EEE00692.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 309

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 119/271 (43%), Gaps = 7/271 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     ++
Sbjct: 24  RQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTDQM 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E    P+G+LRI        +     L EF   YP IQ+ +I++++ +D   +  D A 
Sbjct: 84  RELRATPTGRLRIQMLPGFALDHFGVPLAEFNRRYPGIQLDVIVNDRVVDPVEEGFDIAF 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           ++  PI  S LI+R+L  +     A+P YL+    P   +EL +H    +     +    
Sbjct: 144 QIFPPISDS-LIERRLFVVRRLFCASPAYLEAHGAPQHPRELLQHTTALYSGYPSRNRWT 202

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261
              L   D  +       ++ NS   + +Y + G G+  LP  +  D      LV I+ D
Sbjct: 203 ---LTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASDALVAGRLVPILTD 259

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +    YP   +   K+KA   F+  
Sbjct: 260 FQIAPLSFAAVYPATQRQALKVKALVEFLAE 290


>gi|172065514|ref|YP_001816226.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997756|gb|ACB68673.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 307

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 125/290 (43%), Gaps = 7/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+F  V   G+ + AA+ L L Q ++S ++  LE  +G+KL  R+ R ++ T
Sbjct: 1   MDL-LAAMRIFVRVVERGNLSRAAKDLGLGQPTVSDRVDRLERFLGVKLLLRNTRAVSCT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++ +  V    +  +  +   +    G++RIA     G+ +L   L       P
Sbjct: 60  DEGILFYQRSKIVLDAADEARAVVTLGNNIVRGRIRIAAPHGFGEVVLPEILAVIREQNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L+L+++  D   +  D ++RL + I   + + R+L  +     A+P Y++    P
Sbjct: 120 QLHIDLVLNDEITDPVTEGVDISLRLGQ-IGDGNFVARRLGYVRRVLVASPLYIEKHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               ++  H  I    L           +   RP   P    +  + +  + +  + G+G
Sbjct: 179 EEPTDIVGHPFIRVTGLFNDGQLRLMSSSKSVRPT--PINVVISTSHWRPVYELLLNGAG 236

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           I +L +++     ++  LVR++ +   P F ++   P       K +   
Sbjct: 237 IGVLQEHVCIDALESGRLVRLLPEYTVPGFDLHALLPVTRPVPSKTQVVM 286


>gi|89072268|ref|ZP_01158847.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
 gi|89051800|gb|EAR57252.1| transcriptional regulator, LysR family protein [Photobacterium sp.
           SKA34]
          Length = 305

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 131/290 (45%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L+V   VA   S T AA  L +  ++ S  +  +E  +G+++F R  R L L+  
Sbjct: 1   MLLEDLQVILKVAEFRSITAAATNLDMRTATASAAVKRVEAYLGVEIFVRSTRHLRLSSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      E    LE  ++ +QE      G++RIA + DLG+NL+   L EFLL YP++
Sbjct: 61  GERYLPQCEEALKMLEHAKVNMQEELGIIDGEIRIALSSDLGRNLVTPWLDEFLLQYPNV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++  + + +ID   D  D A+R   P    ++   K+  +     A+P YL     P  
Sbjct: 121 SLRSSISDSNIDFYRDSVDMALRYGSP-TDQNVYGFKICDVPRVVCASPSYLAEHNIPTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             +L +HN + +       +    WL + +    + ++   +  N    + ++CV G G+
Sbjct: 180 PSDLLEHNALFYQLY---DVLQNEWLFSNEETTHKVKLKGNRASNDGDLVRRWCVAGKGV 236

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           A+     + D+     +V +M++  T    ++   P     T  ++  R+
Sbjct: 237 AIKSSLDMSDDLLAERVVSMMQEYKTTPTELWLVCPSRQSVTPTVRLLRD 286


>gi|115361264|ref|YP_778401.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286592|gb|ABI92067.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 307

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 126/290 (43%), Gaps = 7/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+F  V   G+ + AA+ L L Q ++S ++  LE  +G+KL  R+ R ++ T
Sbjct: 1   MDL-LAAMRIFVRVVERGNLSRAAKDLGLGQPTVSDRVDRLERFLGVKLLLRNTRAVSCT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++ +  V    +  +  +   +    G++RIA     G+ +L   L      +P
Sbjct: 60  DEGILFYQRSKIVLDAADEARAVVTLGNNIVRGRIRIAAPHGFGEVVLPEILAVIREHHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L+L+++  D   +  D ++RL + I   + + R+L  +     A+P Y++    P
Sbjct: 120 QLHIDLVLNDEITDPVTEGVDISLRLGQ-IGDGNFVARRLGYVRRVLVASPRYIEKHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               ++  H  I    L           +   RP   P    +  + +  + +  + G+G
Sbjct: 179 EEPTDIVGHPFIRVTGLFNDGQLCLMSASKSVRPT--PINVVVSTSHWRPVYELLLNGAG 236

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           I +L +++     ++  LVR++ +   P F ++   P       K +   
Sbjct: 237 IGVLQEHVCIDALESGRLVRLLPEYTVPGFDLHALLPVTRPVPSKTQVVM 286


>gi|254242265|ref|ZP_04935587.1| hypothetical protein PA2G_03003 [Pseudomonas aeruginosa 2192]
 gi|126195643|gb|EAZ59706.1| hypothetical protein PA2G_03003 [Pseudomonas aeruginosa 2192]
          Length = 306

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 122/293 (41%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+VF   + SGS + AA QL +S +  S  +  LE+E+ ++LF R  R L LT +G 
Sbjct: 4   YDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  LQ    + +G L+++   D G+NLL   L EF   YP + +
Sbjct: 64  AFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D AIR   P   SSL+   L         AAP YL    EP   
Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGAP-ADSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN + +   +   + D        R +          +    + ++ + G G+  
Sbjct: 183 DDLREHNCLLY--QLGGRVHDRWAFQRGRRSLTLTVAGDRVCDDADVVRRWALAGKGLVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V ++     L  ++ D    +  +        + T  +   R F+  +
Sbjct: 241 KSWLDVAEDVRAGRLRLLLPDWQGEATPMNLLCTHRAQLTRPVTLLRAFVRER 293


>gi|295676625|ref|YP_003605149.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436468|gb|ADG15638.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 310

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 122/300 (40%), Gaps = 13/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D ++VF      GS   A  +L  S +++SR I+ LET  G  L +R  R + L+E G 
Sbjct: 4   IDAMKVFVATLDEGSLAGAGRRLGRSPAAVSRAIAFLETHTGTPLLHRTTRTIRLSEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +    +   LE   +   +    P G L +   + +G+ +L+  +  FL  +P   I
Sbjct: 64  RYAQACRRILADLEEADLLAADERSAPRGLLGVTAAVAVGEEVLRPIVDAFLDRHPQASI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ + I  +  D A+R+   +Q S+L+   +  +     A+P YL   R      
Sbjct: 124 RLHLHDRPVSIVDEGIDVALRIAH-LQDSTLVAIPVGEVRRVVVASPDYLATHRAIAVPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSG 240
           +L  H +I+             W     R    P++        VN+  +     V G G
Sbjct: 183 DLASHPIISMTHFGLDS-----WSFPSARQTALPQVVRFTPRSIVNTIRAARASAVDGHG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  L  Y V +      L  ++ D       V    P+      K+++F +F     R++
Sbjct: 238 VTRLFSYHVAEQVRAGALKIVLRDNEHAPLPVNLVTPQGRLAVPKVRSFVDFAAPLLREY 297


>gi|206577035|ref|YP_002236892.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288933846|ref|YP_003437905.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206566093|gb|ACI07869.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288888575|gb|ADC56893.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 295

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 5/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  +GSFT AA  L  +++ +S  +  LE E+G+ L  R  R L LT+ 
Sbjct: 2   LNLQRVTMFIAVVDAGSFTLAAAALGQTKAVVSFNVRQLENELGVTLLLRSTRRLRLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++    +    E  Q E++ S    SG+LRI TT + G  ++   L  F   +P +
Sbjct: 62  GTLFYQRGVALLKAAENLQDEVRASHTGLSGELRITTTPEYGAQVIIPALAAFARRHPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ +  +   D+  +  D AIRL   +  S     ++ +  +   A+P +L +     +
Sbjct: 122 RVRHVSSSHHADLISERFDVAIRLG-TLADSRYRATRIASFAILPVASPAWLASHPV-QT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L + + I    L              +             +S  ++M + + G GIA
Sbjct: 180 LSDLAQADWIIHERLSAPLRWQLRTDQQTEVDFAIASAPRFSADSATALMSFALAGCGIA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP ++V +      LV ++ +   P   VY  YP+A     +++AF +F+  K 
Sbjct: 240 LLPAWLVAEKVAQRELVPLLSEYHFPQQGVYALYPDAQHMPTRVRAFIDFLREKV 294


>gi|330446400|ref|ZP_08310052.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490591|dbj|GAA04549.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 306

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 10/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F + A   SFT AAE + L+QS++S +I  LE  +G++LF R  R L LT++G 
Sbjct: 11  LSGLHCFLIAAEQMSFTRAAEVMFLTQSAVSHKIKNLEDALGVQLFIRQPRKLILTDEGV 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L +V +  +   +         +V+ SG + I+      Q  L   LK F+ LYP ++I
Sbjct: 71  RLKQVLAANF--GDIAYEIRDLKNVELSGDINISVPPTFAQTWLLPRLKSFIDLYPALRI 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   N  +D   +  DCAI   K  +   L   KL+   M    +  Y          +
Sbjct: 129 HLRTRNDLVDFQTESFDCAIYFGKG-EYQGLHTCKLMDESMQPVCSHDYAVAHNLYDHPE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFN--WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            L   + +   D  P      N  W    ++   +   S    +     +Q    G G+A
Sbjct: 188 SLM--SCLLLHDAAPWARAGRNDEWQLWAEQYGIQLPESECTFDRSDLALQAAECGMGVA 245

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     + +      LV   + + +  F+ Y      ++NT K+KAFR+++F +
Sbjct: 246 MGRQSFIAEKLAQQRLVTPFDMMTSSPFSYYVVCRHNMQNTPKIKAFRDWLFSE 299


>gi|152994122|ref|YP_001338957.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835046|gb|ABR69022.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 296

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 15/289 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L++F   A   S T AA+ L ++ +++SR+IS LE ++G +L +R  +GLTLT  G 
Sbjct: 2   LDDLKIFITAANKNSLTAAAQHLDMTIATVSRRISALEQKLGCELLHRSTKGLTLTPVGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  +E    L+     L ++     G L++   ++LG   L    ++F+ LYPDI++
Sbjct: 62  SYYRECAEFIDALDQRISNLDQTLNSLKGDLKVLAPVNLGSGPLDAFWQDFVQLYPDIEL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L N   DI    AD A+R      SSSLIQ+KL  I     A+P+       P +I+
Sbjct: 122 NIELSNTLQDIRDTRADIALRSGNQ-PSSSLIQKKLGHIEPILVASPN--MAFPLPKTIE 178

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVLGSGIA 242
           +L     I             +WL   ++    P  +      N     +     G+GIA
Sbjct: 179 DLQHAPSIASNMFA-------DWLLINNQEDRRPLNKEHRHISNDMTITLNLAKAGAGIA 231

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           L+P  +V    +   L+R++ +    +  ++  +P     + + K  + 
Sbjct: 232 LIPMSMVHGALETGELIRVLPEWRGQNREIFLVWPYRRSLSARAKLLKE 280


>gi|309779691|ref|ZP_07674450.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308921632|gb|EFP67270.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 306

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 124/294 (42%), Gaps = 11/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L++F  +  +G+ + AA +L  ++S++S ++   E  +G++L  R  R +  TE 
Sbjct: 1   MDLNALKLFVEIVDAGNLSAAARRLQTTRSNVSHRLKAFERALGVQLLRRTTRRVEPTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ ++     +  ++      +        G +R++    LG  L+   L  F   YPDI
Sbjct: 61  GAGIYEHGRSILREMAAADALVSSLGKSLQGSVRLSVPTGLGHLLVSPLLVAFKRSYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +  DN+  D+  +  D A+R+       SL+   L  +     AAP YL     P +
Sbjct: 121 RLDVRFDNRVSDLISEDVDVALRIVSN-PPESLVATLLDEVDWVLCAAPDYLAVHGVPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  L  H +++     P   +     A + D          +  ++YL +      G+G+
Sbjct: 180 LDALADHTIVS----APAVGQPLRLSAQLGDERTLVTLDPGVSSDNYLFLQAAVRSGNGL 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFI 290
            +LP Y   D   + ++ R++       F   +Y     +   T   +   +F+
Sbjct: 236 GILPYYAAADDLRDGHVKRVLPGYRFSVFGSRLYMLAMPSRYRTLATRHLLDFL 289


>gi|296115616|ref|ZP_06834243.1| regulatory protein, LysR:LysR, substrate-binding [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977865|gb|EFG84616.1| regulatory protein, LysR:LysR, substrate-binding [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 298

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 122/292 (41%), Gaps = 4/292 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  D  +++  F  VAR  SFT AA +L ++ S++S  + GLE  +G++L  R  R +  
Sbjct: 1   MPRDHINEMTAFLTVARERSFTRAAAELGVTPSALSHTVRGLEERLGLRLLSRTTRNVAT 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G +L R    +  ++      +     KP+G LRI  T    + + +  L EFL  Y
Sbjct: 61  TDAGERLLRRVGPLLEQVSAELDLITSLREKPAGSLRITCTDAAIELVFRPKLAEFLRKY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI ++L +D   +DI  +  D  +R+ + ++      R           +P Y   C  
Sbjct: 121 PDIHVELSMDYAFVDIVSERFDAGVRIGESVEKDMCATRIGPDWRFCVIGSPDYFDRCPA 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P+  +EL  HN I            + +     R I          ++ + ++   + G 
Sbjct: 181 PVMPRELGNHNCINMRMTTAGGNLRWEFREPKGREIALRVSGQTTFSNSMLVLGAAIDGI 240

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+  +P  + K   +   L+ ++ D        Y  YP    ++    AF  
Sbjct: 241 GLGYVPYDLAKPYIEAGKLMEVLSDWSLECEGPYLYYPSRRLHSPAFAAFVE 292


>gi|290511073|ref|ZP_06550442.1| HTH-type transcriptional regulator PtxR [Klebsiella sp. 1_1_55]
 gi|289776066|gb|EFD84065.1| HTH-type transcriptional regulator PtxR [Klebsiella sp. 1_1_55]
          Length = 295

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 5/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  +GSFT AA  L  +++ +S  +  LE E+G+ L  R  R L LT+ 
Sbjct: 2   LNLQRVTMFIAVVDAGSFTLAAAALGQTKAVVSFNVRQLENELGVTLLLRSTRRLRLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++    +    E  Q E++ S    SG+LRI TT + G  ++   L  F   +P +
Sbjct: 62  GTLFYQRGVALLKAAENLQDEVRASHTGLSGELRITTTPEYGAQVIIPALSAFARRHPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ +  +   D+  +  D AIRL   +  S     ++ +  +   A+P +L +     +
Sbjct: 122 RVRHVSSSHHADLISERFDVAIRLG-TLADSRYRATRIASFAILPVASPAWLASHPV-QT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L + + I    L              +             +S  ++M + + G GIA
Sbjct: 180 LSDLAQADWIIHERLSAPLRWQLRTDQQTEVDFAIASAPRFSADSATALMSFALAGCGIA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP ++V +      LV ++ +   P   VY  YP+A     +++AF +F+  K 
Sbjct: 240 LLPAWLVAEKVAQRELVPLLSEYHFPQQGVYALYPDAQHMPTRVRAFIDFLREKV 294


>gi|254452613|ref|ZP_05066050.1| transcriptional regulatory protein [Octadecabacter antarcticus 238]
 gi|198267019|gb|EDY91289.1| transcriptional regulatory protein [Octadecabacter antarcticus 238]
          Length = 294

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 127/297 (42%), Gaps = 27/297 (9%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             +  F  VAR+ +F+ AA +L +  S++SR+I+ LE  +G +L  R  R + LTE G+ 
Sbjct: 2   RDIAHFVEVARTRNFSQAAARLGIPASTLSRRIAELEAGLGTQLLVRTTRRVDLTEAGAL 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 E+       + EL E + +P G LRI+ T D     L   + EF   +P+I + 
Sbjct: 62  FLSRCEEIVEAARGARAELSELTRRPRGTLRISVTPDFATTFLAPVIVEFCERHPEIDLH 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L+ +  DI  +  D AIR+  P +   L  RKL+T     YA+P YL     PL+  +
Sbjct: 122 LDLNPRRADIMAEGVDVAIRIGMP-REPYLYARKLITARRGLYASPAYLAAAGTPLTPLD 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY----------- 234
           L  H  ++     P          T +  +  P    +Q N+   +++            
Sbjct: 181 LAVHRCLSVSSGEPLPWVLHRGDETEEISVHGP----VQANAPGIVLRLAAAGLGIAAAD 236

Query: 235 -CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +          Y+ +   +LV ++ D       +Y      +  T K + F +F+
Sbjct: 237 EVMA-------SPYLAQ--GDLVAVLPDWSIRPVPIYAVTATKVH-TVKTRIFLDFV 283


>gi|117918864|ref|YP_868056.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611196|gb|ABK46650.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 310

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 119/296 (40%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F  VA  GS + AA ++ LS +S S  I  LE ++   LF R  R L LT Q
Sbjct: 1   MLLNDLALFVRVADCGSISAAAVEMELSAASASAAIKRLEKQLDTSLFVRTTRSLRLTAQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L   +  +     K SG L ++ + D G+NL    L +FLL +P +
Sbjct: 61  GERYLIHCRRALSDLALGEQAIASDKGKVSGTLSLSVSSDFGRNLFVPWLDDFLLDFPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L L +       D  D A+R  KP Q S+ +   +        A+P YL    +P +
Sbjct: 121 QVRLHLGDNISSFYHDKIDVAVRYGKP-QDSNQVAFPICCADRLLCASPEYLAKFGKPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L +HN + +   +     D        +            N      ++ V G G+ 
Sbjct: 180 LEQLAQHNCLFYK--LDDRTHDQWQFERDGQEFKIRVTGNRSANDAEIARRWAVAGKGLV 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                 + ++     LV ++ +    S  +Y   P     T  +   R  +  + +
Sbjct: 238 FKSSLDLAEDIMAGRLVPLLPEYRGESVNLYLVCPGREHVTPVVLLLREMLRQQTQ 293


>gi|115359495|ref|YP_776633.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284783|gb|ABI90299.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 314

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 137/296 (46%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDSGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +ET + ++      PSG+LR+        +++   +  +   +P
Sbjct: 61  EEGRAFLQDARAIIESVETAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVHGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R++    +   A+P YL+   +P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGNSRLRILASPAYLEAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H L+ F    P+ +  +  L     P        +  +S  ++ Q  + G+G
Sbjct: 180 RKVEDLARHTLLGFTQ--PESLNVWPILGADGEPCRIE--PAIWSSSGETLRQLALEGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  L D++   +     LV+++          +   Y      + ++ +F +++  
Sbjct: 236 VVCLSDFMTAQDREAGRLVQVLARQTLDVEQPINAVYYRNTAISSRIASFVDYMIE 291


>gi|163761415|ref|ZP_02168489.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
 gi|162281410|gb|EDQ31707.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
          Length = 305

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 7/298 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +FDW++ R F V A  GS + AA  L ++Q ++ RQ++ LE E+G+ LF R  RGLTLT 
Sbjct: 7   NFDWNRARAFLVTAEEGSLSAAARALGMAQPTLGRQVAALERELGVALFERVGRGLTLTP 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +        +     +    G + I+ +       L   +++     P 
Sbjct: 67  SGLELMDHVRAMGEAAARMSLSASGKAQAIEGTVSISASETDAAFRLPPIIRKLRETAPG 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++++  N + D+    AD AIR  +P Q  +L+ RK+  I    YA P YL++   P 
Sbjct: 127 IDVEIVATNTESDLRRREADIAIRNYRPTQ-PNLVARKIRDIEGRIYATPFYLESIGNPS 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++      I F     +  E    +A     + +   S L   S+L    +   G GI
Sbjct: 186 APEDFAAAEFIGFN----RSGELIAAMARFGLTLTQKNFS-LISESHLVQWSHVKQGLGI 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDWK 298
            ++   I    P +VR++  V    F V+      +  + +++   + +    AR ++
Sbjct: 241 GVMAADIGDAEPGVVRVLPGVDPLVFPVWLVTHREVHTSRRVRLVFDLMAEALARAYR 298


>gi|119775563|ref|YP_928303.1| DNA-binding transcriptional activator GcvA [Shewanella amazonensis
           SB2B]
 gi|119768063|gb|ABM00634.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 303

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 113/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L ++ +       L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTQLSDATDRLLARSA--IGSLTVSMSPSFAIQWLVPRLAKFSEKNPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI   +      L   KL    +    +P  L   +   +  
Sbjct: 126 RIKAVDSEEGSLTDDVDVAIYYGQG-SWPGLRADKLRNEVLIPVCSPMLLNGHKPLETPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKHHTLLH----DMSRHDWQAWFRQCGVTDVNVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV   ++V+      Y    +     GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQNHAELGKIVAFREWML 289


>gi|332306421|ref|YP_004434272.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173750|gb|AEE23004.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 302

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 122/295 (41%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNALKAFEAAARHLSFTRAADELFVTQAAVSHQIKSLEEFLSMKLFMRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +++  L+     L        G + +A         L   L +F    PDI I
Sbjct: 68  GYYLDLKDIFQALQEATQRLLARGE--KGAITVALPPSFAIQWLVPRLNQFSQSNPDIDI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +  +  ++  +KL T ++    +P   +  +    + 
Sbjct: 126 RIKAVDFDEGFLTDDVDVAIYYGRG-KWPNVYAQKLHTEYLTPVCSPLLFQGQKPLEKLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+             NW+              +  +  + ++Q   LG GIAL 
Sbjct: 185 DLKHHLLLHDSSR----EAWKNWIKHFHISGVNVNQGAI-FSHSMLVLQAAALGQGIALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              + +   ++  LV   ++ +  +   Y    ++    GK+ AF  ++  +  D
Sbjct: 240 HSVLARPEIESGRLVCPFDERLIATNAYYAVCHQSQAELGKIVAFLQWLQSQVED 294


>gi|308050529|ref|YP_003914095.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632719|gb|ADN77021.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 304

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 124/292 (42%), Gaps = 14/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S   +G L ++ T       L   L  F   +P++ +
Sbjct: 68  SYFLDIKDLFTQLADATERLLARSA--TGSLTVSMTPSFAIQWLVPRLARFSEQHPEVDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D     D  D AI   +    + L   KL +  +    +P  L+       I 
Sbjct: 126 RIKAVDEDEASLTDDVDVAIYFGRG-NWAGLRADKLRSECLVPVCSPRLLQGDNPLREIA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L +  L+         M   +W A + +      + S    +    ++Q  + G G+AL
Sbjct: 185 DLARFTLLH-------DMSRRDWKAWIKQVGANVNVNSGPIFSHSSLVLQAAIHGQGVAL 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               + +   +   LV    DV+      Y    E   + GK++AFR ++  
Sbjct: 238 GSSVLARPEVEAGRLVCPFGDVLKSKNAYYLVCHENQADLGKIEAFREWMLQ 289


>gi|330876846|gb|EGH10995.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 294

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L LT  G     
Sbjct: 8   RVFIAINERGSLIAAAETLDMSRAMVTRYLAQMEGWAGARLLHRTTRKLGLTAPGQATLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G +RIA +  L Q +L   +  +L  YP   + L +
Sbjct: 68  RCQQLLELADAVPLAADTQVDEPRGMVRIACSQSLAQAVLAPAVTAYLQRYPGTSVDLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   +LI R L        A+P YL     P   QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQL-DPNLIARPLGHCDSQVCASPAYLAAHGTPSRPQELSA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E           +  P    L  N  + +++    G+GIAL P + 
Sbjct: 187 HNCLTYSYFGKSLWE----FTHQHTQLSVPVGGNLSANDSVVLLEAAAAGAGIALQPVHS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V     +  L+ +M D    +  +Y  Y      +  L+   +F+  
Sbjct: 243 VAPLIASGKLIALMPDYQPRALGIYAIYTSRHHQSATLRTLLDFLAE 289


>gi|332163372|ref|YP_004299949.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607868|emb|CBY29366.1| transcriptional regulator, LysR family [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667602|gb|ADZ44246.1| LysR family transcriptional regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862213|emb|CBX72375.1| hypothetical protein YEW_DQ15760 [Yersinia enterocolitica W22703]
          Length = 319

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 134/294 (45%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F  +  +GS + AA +L  SQ +ISR++  LE  +G+KL  R    + LT+ G 
Sbjct: 12  IELMQTFIRIVEAGSLSGAAVRLGTSQPTISRRLQTLERLLGLKLLQRTTHIMKLTDDGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++     T + +L+ ++ +P G LR+      GQ+ L   LK+FL  YP + +
Sbjct: 72  RCYSHAKQLIESWNTMEDDLRGATDEPRGLLRVLVPHAFGQDQLIKPLKDFLHQYPKMSV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L+++  D   +  DCAI++   +   S++   L  +     AAP  L N   P   +
Sbjct: 132 EWMLNDRRPDFIAEGIDCAIQVGS-VTDPSVVAILLAEVPRIVVAAPELLDNQPLPTRPE 190

Query: 185 ELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L   + +        + +        + R   +P+   L  +S  ++    + G G  +
Sbjct: 191 QLQDFHWLALNTFYRNEVVLSHKTNGEIHRFSIQPQ---LSTDSLYALRNAALTGLGAGI 247

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              ++V D+     LV +  D       +Y  YP A     +L+AF + I  +A
Sbjct: 248 ASTWVVNDDIKQGRLVHLTPDWHGLPLPIYLVYPHASYYPARLRAFLD-IMRQA 300


>gi|83720817|ref|YP_442695.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167581634|ref|ZP_02374508.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|257138907|ref|ZP_05587169.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83654642|gb|ABC38705.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 303

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 120/293 (40%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  +    + E+        G L ++     G+  +      F+   PD
Sbjct: 61  DGAAFLERCRGLLTEWAQAENEVVAGRRAVGGHLIVSAPAAFGRKHVAPLAPAFIADKPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 LQMSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L  HN + F     +  ++  W       +   R+S  L  N    + ++   G G
Sbjct: 180 TLDDLAGHNCLAFNL---QGGQNRGWYFRRSGKLVTMRVSGTLDCNDGELLHRWVSEGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + +        L  ++++   P + +   YP+      +++ F +++
Sbjct: 237 LGWRSTWEIAQQLARGELETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|27379247|ref|NP_770776.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27352398|dbj|BAC49401.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 299

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 115/288 (39%), Gaps = 10/288 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF      GSF  AA+ L +S   + + +  LE  +G +L  R  R  +LT+
Sbjct: 1   MDRLTSMAVFVKAVDLGSFAAAADALEMSGPMVGKHVRFLEQRLGARLLNRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V    E     + +   +P G+LR+     LG++ +   L +    +  
Sbjct: 61  AGQAYYERCRAVLSAAEAADAVVADELSEPRGRLRVTMPALLGRHCIAPLLMKLARKHSH 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L   +   DI     D AIR       S LI R++    M    A  YL+   +P 
Sbjct: 121 LELDLSFGDPIADIVEGGYDLAIRTGDLDNQSGLITRRIARQRMVVCGARSYLRAHGKPK 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDR--PIGEPRISCLQVNSYLSIMQYCVLGS 239
           SI +L  H  I +     +      WL   D   P        L+++   +I      G 
Sbjct: 181 SIDDLAAHQAIIY----RRSGRVRPWLFPRDGQPPREIMPAGRLRLDDLEAIADAAAQGM 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G+A LP ++V++   N  LV +        +  +  +P + +   K++
Sbjct: 237 GLAWLPCWLVRERLNNGALVGLFGGQPEFLYDCHALWPRSPRMPLKVR 284


>gi|54303303|ref|YP_133296.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46916733|emb|CAG23496.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 315

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+  +L +   V+  GSF  AA+  ++ +S +S+QI  LE  +G++L  R  R L+LT 
Sbjct: 1   MDFATRLELLLEVSEHGSFAKAADARNIDRSVLSKQIKNLEDTLGLRLLNRSTRSLSLTT 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++ +    V  +LE T+        +P G LRI+++   G+  +Q  +K F+  +P+
Sbjct: 61  AGYEIVKQAQRVRDELEQTRRLADTFHHEPKGHLRISSSTMFGRIYIQKAIKTFMNKFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+LD++ +DI  +  D   R+  P + S+LI RKL   H    A+  ++     P 
Sbjct: 121 VSVELVLDDRKVDIIGERFDVVFRIGSP-KDSNLIARKLADNHTAILASEDFVAKHGMPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           + QEL     +T+ +      +    ++  D  I         +VN    I+     G G
Sbjct: 180 TPQELVTLPSVTYSNGTFTTNKLSIAISPEDTEIKTFNTHGRYKVNEAELILDGIQAGLG 239

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRN 288
            A +  +++  N     L  ++ +   P     +Y  Y         +K F  
Sbjct: 240 YAEVGLFMLPKNIKEMGLTPLLTNHKLPLSHGGIYAVY-SHRNQPPLVKHFIE 291


>gi|296388857|ref|ZP_06878332.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 309

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 122/292 (41%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +
Sbjct: 10  DEVATLLALAEHGSFAAAGRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++
Sbjct: 70  LASRFRQAVDLLDEAEHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVMLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                + +DI  +  D AIR+ + +  S L+ R+L        AAP YL+    P    +
Sbjct: 130 TDYSERFVDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLERHGVPRIPAD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F  L          L   D          +  N   +++     G GI    
Sbjct: 189 LAAHNCLGFSGLHSYPEWK---LTRQDEQQPVRVRGSMVSNDNEALLCAARQGLGIFAAG 245

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++++  +     LVR++ +        VY   P A   T    AFR ++  +
Sbjct: 246 EWLMSRDLEAGRLVRVLPEWQLDADAGVYLVRPSARYATAAASAFRQWVEAR 297


>gi|307728771|ref|YP_003905995.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583306|gb|ADN56704.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 305

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 135/298 (45%), Gaps = 11/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +  F  V    S T AA  L L +S+IS +++ LE E+G++L  R  R  ++TE 
Sbjct: 2   LDLNDIYYFVQVIEHKSITAAARALALPKSTISYRVAQLEAELGVRLINRTTRQSSVTEI 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++ +     +  +    +  +++  + PSG +RI+T +   Q  L+G L +F   +P +
Sbjct: 62  GAEFYAHAIAMLQEAHAAESAVRQRILSPSGLIRISTAVATAQFALKGLLPKFCERHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I     + ++D+  +  D AIR     +Q+S+L+QR L       +A+P +L     P 
Sbjct: 122 RILQRTADIEVDVIAERFDIAIRAHSHALQNSTLVQRTLALTPWMLFASPGFLDGSVAPK 181

Query: 182 SIQELDKHN-LITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
             ++L     L    D +P       W+      +   R+   L  +  L++      G 
Sbjct: 182 EPEDLIGRRSLFMVRDGVPN-----EWVLKSGGDVRRLRVDPVLMTDCMLTLKDAAAAGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GI  LP YI K+      L+R++ D       +    P A      ++AF +++  + 
Sbjct: 237 GIVALPAYICKEEVAQGALIRVLSDWTCGDAQLTALVPFAQNRLPSVRAFLDYLVAEV 294


>gi|254449716|ref|ZP_05063153.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198264122|gb|EDY88392.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 300

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FDW+K R F V A  GS + AA  L ++Q ++ RQ+ GLE E+GI LF R  RGLTLT 
Sbjct: 11  KFDWNKARAFLVTAEEGSLSAAARALGMAQPTLGRQVDGLEQELGIVLFERVGRGLTLTP 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++        +     S    G + I+ +      LL   + +   + P 
Sbjct: 71  SGLELLEHVRDMGEAAGRVSMTALGQSQALEGTICISASETYAAVLLPPIIAKLRKMEPG 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+++++ N   D+    AD AIR  +P +   LI +K+       YA P Y+     P 
Sbjct: 131 IQVEIVVANHASDLRRREADIAIRNFRPTE-PDLIAKKIGDADAVLYATPDYIAEIGNPT 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     +   D     ++  N L         P    L   SYL + +    G+ I
Sbjct: 190 KPYDLRHAEFVNM-DHSGMMLKGLNTLGLGLTGANFP----LLTESYLVMWELVRQGAAI 244

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +L  +I   +P + R++ D+    F ++      L  + +++   +F+  + +
Sbjct: 245 GILDAHIGDADPVVRRVLPDLEPLVFPIWLVSHRQLTTSRRIRMVYDFLAEELK 298


>gi|160901057|ref|YP_001566639.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366641|gb|ABX38254.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 335

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 135/293 (46%), Gaps = 11/293 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +   GSF  A   L    S +S++++ LET +G++L  R  R L LT++G +
Sbjct: 10  DELAALVALHEQGSFAAAGRALLRHPSVLSKRLNALETRLGVRLVERSTRHLHLTDEGLR 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    +   Q E  + + +  G+LR++    +G+  L   L EF L +P I ++
Sbjct: 70  LVDKVRQAAGLIADAQKEAAQGASQARGRLRLSLPAAMGRRWLSPLLAEFALAHPQIVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +   ++ +DI  +  D A+R+ + +  S L+  +L        AAP YL+    P+  ++
Sbjct: 130 VEYADRFVDIVGERFDAAVRIGR-LADSRLVALRLGGHQRILGAAPAYLQAHGTPVHPED 188

Query: 186 LDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCL-----QVNSYLSIMQYCVLGS 239
           L  H  + F  L      E  +   + D P G+ R + L       N   +++   V+G 
Sbjct: 189 LAAHRCLGFTGLQSFPQWELVHGGTSGDVPQGQARHTVLVRGPMVSNDSEALLTAAVMGV 248

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRN 288
           GI    D+++ ++     LVR++          +YF  P A  ++  + A R+
Sbjct: 249 GILAGGDWLMSEHMAAGRLVRVLPQWRLDGASGIYFVRPSAAFSSAAMTALRD 301


>gi|90578266|ref|ZP_01234077.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
 gi|90441352|gb|EAS66532.1| transcriptional regulator, LysR family protein [Vibrio angustum
           S14]
          Length = 303

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 123/304 (40%), Gaps = 15/304 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR---HARGL 57
           +    + L+ F   AR  SF+ AAE+L+++ +++ + +  LE  +   LF+R       L
Sbjct: 3   LPIHLNALKAFEASARHQSFSAAAEELNVTPAAVGQLVRTLEEWLETPLFHRANSGKIRL 62

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             TE   +        + KL      LQ+S     G L +  +       L   L  F  
Sbjct: 63  LPTETAERALPEIRAGFDKLSQGLELLQQSPT--CGILTVTVSPAFAAKWLLPRLDRFQA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           L P+  ++L  + K ID  +   D  +R         L+  KL+   +    +P  L   
Sbjct: 121 LCPETDVRLDTNLKPIDFVIQRVDIGVRYGTG-NWQGLVAEKLMEEEVFPVCSPQLLAQA 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISC--LQVNSYLSIMQY 234
              +  ++L    LI   DL       F  W A +D+       S   +Q+N+  +++Q 
Sbjct: 180 DSLIKPEQLLAQTLIH--DLSMDEHSGFPTWSAWLDKAGVAEHQSAHNIQINNSAAVLQT 237

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G GIAL    +VKD+     LVR+   +        +  Y     +  K++ FR+++
Sbjct: 238 AIDGGGIALARSVMVKDDLSAGRLVRLFPTIQFDSPLAYFVVYKPESIDIAKVQVFRDWL 297

Query: 291 FLKA 294
             + 
Sbjct: 298 HEEV 301


>gi|260556647|ref|ZP_05828865.1| transcriptional regulator lysR family [Acinetobacter baumannii ATCC
           19606]
 gi|260409906|gb|EEX03206.1| transcriptional regulator lysR family [Acinetobacter baumannii ATCC
           19606]
          Length = 298

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 134/299 (44%), Gaps = 8/299 (2%)

Query: 1   MS--FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+    WD  + F VV   GSF+ AA +L ++Q ++  +I  LE ++G  LF R   GL 
Sbjct: 1   MNKQISWDDQKFFLVVLEEGSFSAAARKLGVTQPTVRTRIEHLEHQLGTVLFSRSVHGLK 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            TE    L   T  +    +             +G +R++ +  LG  +L   L +F LL
Sbjct: 61  PTEHALALEVPTRAMQRASDYFMRTASAPLNVIAGSVRVSVSDFLGTMVLPQLLSKFRLL 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP++ I+L L+N   ++    AD AIR+  P+Q  +L+ +K+  + +  YA   Y++   
Sbjct: 121 YPEVNIELSLNNSSANLLEQEADLAIRMYPPVQ-EALVAKKIGEVPLGLYAHRDYIQRKG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P  +++L +H+LI      P        +  +  P  +     ++ +S+ +        
Sbjct: 180 NPTCLEDLRQHDLIG-----PDRNLLEREMIRMLLPELKNEQFKIRTDSHPAQFSAVKAA 234

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            GI  +   I      L++++ D+    + ++    E  +   K++   +++     ++
Sbjct: 235 LGIGFIQCPIANQCQELIQVIPDLEVHRYDLWLVIHEDFRQIPKIRTLFDYLAQALGNY 293


>gi|240948269|ref|ZP_04752655.1| DNA-binding transcriptional activator GcvA [Actinobacillus minor
           NM305]
 gi|240297308|gb|EER47849.1| DNA-binding transcriptional activator GcvA [Actinobacillus minor
           NM305]
          Length = 296

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 133/297 (44%), Gaps = 16/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  +FT AA+ L ++Q+++S QI  LE  +GIKLF+R  R L LTE G 
Sbjct: 8   LNALKAFESAARHLNFTKAADDLFVTQAAVSHQIKLLEDFLGIKLFHRKNRLLELTETGL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  K+ +   +++  + +    L I+TT   G + L   L +F   +PDI++
Sbjct: 68  QYFEEIKPLLDKIASATEKVKLKASRQI--LSISTTPSFGMHWLVPRLNDFHQRFPDIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           +L    +D  +     D AI        ++L   +LV   +   A+P YLK    P++  
Sbjct: 126 RLTTMPQDEGLFGKDTDVAIYYGNG-NWNNLEAIELVKARIMLLASPDYLKEN--PITEP 182

Query: 184 QELDKHNLITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L   NLI          M D   L  V+  IG         ++    +Q    G G+ 
Sbjct: 183 KDLAGKNLIHVCSYTKWNQMVDHLNLGNVNTEIGP------MFSTTSMGIQAAKHGQGVV 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +    + +D      ++E   T  +     Y  YP  +  + K+K F N+I  + ++
Sbjct: 237 VANRMLAQDEIEAGTVIEPFSTDVYDEKAFYVVYPPQMAQSEKVKHFVNWITEEIKN 293


>gi|34496171|ref|NP_900386.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34330287|gb|AAQ58392.2| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 313

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F  +AR+GSFT AA+ L   +S +S ++  LE E+G  L  R  R + LTE G +
Sbjct: 5   DNLLAFDALARAGSFTAAADLLDCHKSLVSARVKELEREMGAALVLRTTRRVALTEAGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +   L   ++ + E+     G L ++TT  L Q++L   L E   L+P +Q+ 
Sbjct: 65  LRPHAARLRETLSQARMAVDETQSDIEGPLTVSTTSSLAQHVLGPALSELAALHPGLQLS 124

Query: 126 LILDNKDIDISMDYADCAIRLRK--PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           L ++N+  D   D  D  +R  +   +    L+ R       + YA+P YL         
Sbjct: 125 LEVNNRLQDPVADVLDFCLRSARSHTVHDDRLVARLAGYASENLYASPAYLARHPAIRQP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H L+         ++    LA  ++ + +P  +   +N Y       + G GI +
Sbjct: 185 ADLAAHRLLVMESEQRGGLK----LARGEQLLSQPVGALFYLNDYPLRTHLALAGHGITM 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L DY V+    +  L R++ +     + +Y  +P     T K + F +F+  + 
Sbjct: 241 LADYAVQSHLRDGELARVLPEWHCDYWPIYLVHPFRAPLTRKYQTFIDFVLPRV 294


>gi|87121606|ref|ZP_01077494.1| putative transcriptional regulatory protein (LysR family protein)
           [Marinomonas sp. MED121]
 gi|86163138|gb|EAQ64415.1| putative transcriptional regulatory protein (LysR family protein)
           [Marinomonas sp. MED121]
          Length = 301

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 138/302 (45%), Gaps = 15/302 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  ++ F  V   GSFT AA+   +  SS+SR++S LE ++G  L  R  R + LTE
Sbjct: 1   MDEFKAIKYFIKVVELGSFTQAAQHFQVPASSLSRRVSDLEKQLGASLLKRSTRVVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS+ ++  S +  + E T   ++    KP G L+++     GQ +L   L E + LYPD
Sbjct: 61  IGSQYYQDVSLLLSQFEKTNDAVRSYQAKPMGMLKVSAMTGFGQRVLLPLLDELVQLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + L ++   +S D  D A R    + +  +   KL+  H    A+  Y +   +P 
Sbjct: 121 IILDVHLTDELSSLSHDEVDIAFR-GGYVPNERINAVKLMDNHFIPVASTAYFERYGKPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
            + EL  H  + +            WL+ ++    +      +  N    +++  + G G
Sbjct: 180 HVSELKNHRGLYYRTPKGHT----PWLSELEGQWQDVSAKIQVCSNEGSWLIEKAIQGEG 235

Query: 241 IALLPDYIVKDN---PNLVRI-MEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I +LP +++ +      L+ +  E+ +T    P F ++  Y +   +  K+K   +FI  
Sbjct: 236 ILMLPKWVLMEYISKGELIELKFENEVTVSPNPDFGIFLLYQKQRYHVPKVKVAVDFIRE 295

Query: 293 KA 294
           + 
Sbjct: 296 RL 297


>gi|163856083|ref|YP_001630381.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163259811|emb|CAP42112.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 306

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTE 61
            DWD LR F  VAR+   + AA +L +  ++++R+I  LE E+   LF +    G  LTE
Sbjct: 2   LDWDSLRYFLEVARTQRVSAAARRLGVEHTTVARRIRALEAELDSLLFEKSRSTGFVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   ++T +  L       SG LRI  T   G  +L     +F   YP 
Sbjct: 62  DGQRLFVYAEQMESAVQTARENLSGIGQALSGHLRIGATEGFGSYVLTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    +  KL    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCTKLCDYTLRLYGTPGYLARHAPIA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I + D +      F+        +       L+  S ++     + G  +
Sbjct: 181 TRADLAGHTFIGYVDEL-----LFSERLRYLEDLLPDSRVVLRSTSVVAQYHAALQGRSL 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I   +  LV ++ED I  + + +    E L    ++    +F+
Sbjct: 236 AILPCFIAAQDARLVPVLEDDIAITRSFWMYCHEDLHKLKRMSVLWDFM 284


>gi|313111445|ref|ZP_07797247.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310883749|gb|EFQ42343.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 299

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 117/298 (39%), Gaps = 6/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D LRVF   AR  SFT AAE+L  +Q ++S+QI  LE E+   LF R  RG+ LT
Sbjct: 1   MPLSLDLLRVFESAARQLSFTAAAEELGTTQPAVSQQIKRLEKELATPLFQRVHRGIVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L R  +     ++     L          L++AT        L   L  F   +P
Sbjct: 61  DAGQLLLRHVAAGLETIDAGIAALGARQRHE--VLQVATDYAFAAYWLMPRLPRFHQAHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+   + +       D AI              +L    +    +P  ++  + P
Sbjct: 119 HLDVSLVTSERGLAGQRGDIDVAILFGDGRSKHG-EAHRLFREEVFPVCSPRLVEGLQLP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+   L +  ++           D+  L        +P  + L  ++Y  ++Q  + G G
Sbjct: 178 LAKAHLARLPMLHLKPAQHARWFDWPALFEALAIDRQPIPAVLSFDNYTLLIQAAIAGQG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A+   ++V    +   L R + +     +  Y   PE  +    +  F +++  + +
Sbjct: 238 VAIGWRHLVDGLLEQGLLCRPIGESCLSRYGYYAVLPERKRRQRLVDGFVDWLQAELQ 295


>gi|170724956|ref|YP_001758982.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810303|gb|ACA84887.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 304

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 123/297 (41%), Gaps = 6/297 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L++   +A   S + A  +L ++ ++ S  +  LE ++  +LF R  R + LTE+G 
Sbjct: 4   LNDLQLAIRIAELASISAAGRELGMTPAAASAALQRLEQKLDCQLFARSTRSMKLTEEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +    LE     L ++  +  G++RIA   D+G++L++  L EF   YP + +
Sbjct: 64  LFIESGRQALTLLEGASNALADNRGELKGEIRIALPSDIGRSLIRPWLDEFAAQYPQLTL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++  D+     D A+R    ++ S+L++R+L      A A+P YL     P    
Sbjct: 124 SLYFGDQMTDLIGQNVDLALRYGH-LEDSNLMRRQLAMTPRVAVASPDYLAKQGTPKHPH 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H ++          +     +              Q N    + ++ + G GIA  
Sbjct: 183 ELSQHKILILNRGGEPWHKWH--FSQKGEEFDINVRGARQCNDGAVLREWALDGMGIAYK 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
               V  +     L  +  D +     +   + +      K++   + +  K ++++
Sbjct: 241 SWLDVAADVHQGRLKLLFADQLASKTPLQLVHLQTDYPKFKVRCIMDLLSDKIQEFQ 297


>gi|84385208|ref|ZP_00988240.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84379805|gb|EAP96656.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 310

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 10/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L+V   VA   S T AA  L +  ++ S  +  +E  +G +LF R  R L L+  
Sbjct: 1   MLLEDLQVILKVAEFRSITAAATNLDMRTATASAAVKRVEAALGAELFVRTTRHLRLSSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    LE  ++ ++E      G++RIA + DLG+NL+   L EFLL YP+ 
Sbjct: 61  GERYLPECEQALKMLEQAKLNMREELGIVDGEIRIALSSDLGRNLITPWLDEFLLEYPNA 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++  + + +ID   D  D A+R   P   +++   K+  +     AAP YL     P  
Sbjct: 121 ALRTSISDSNIDFYRDSVDMALRYGSP-TDANMYGFKICDVPRILCAAPEYLAEMGIPKH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +HN + +   +   ++D        +            N    + ++C+ G G+A
Sbjct: 180 PSDLTQHNGLLY--QLHDILQDEWIFNDGTQDHKVKLKGNRASNDADLVRRWCIAGKGVA 237

Query: 243 L-----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +     +  +++  +  +V++M +       ++   P     T  ++  R+
Sbjct: 238 IKSCLDMSRHLL--SGEVVKVMPEFKPTPTELWLVCPSRQSITPTVRLLRD 286


>gi|217975026|ref|YP_002359777.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|217500161|gb|ACK48354.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 308

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 119/296 (40%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F  VA  G+ + AA ++ +S +S S  I  LE ++   LF R  R L LT Q
Sbjct: 1   MLINDLALFVRVADCGNISAAAAEMDISAASASAAIKRLEKQLDTSLFIRTTRSLRLTVQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L   +  +     K SG L ++ + D G+NL    L EFLL +P +
Sbjct: 61  GERYLIHCRRALSDLALGEQAIASDKGKISGTLSLSVSSDFGRNLFVPWLDEFLLDFPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L   +       D  D A+R  KP Q S+ +   L ++     A+P YL     P S
Sbjct: 121 QVRLHFGDNISSFYHDKIDVAVRYGKP-QDSNQVAFPLCSVDRVLCASPEYLAEFGVPDS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +HN + +   + +   D        +            N      ++ V G G+ 
Sbjct: 180 LELLIEHNCLFYK--LDERTHDQWQFRRDGQEYKVRVTGNRSANDAEIARRWAVAGKGLV 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                 + D+     LVR++ +       +Y   P     T  +   R  +  + +
Sbjct: 238 FKSSLDLADDLISGRLVRLLPEYQGEPVDLYLVCPGREHVTPVVLLLREMLRQRTQ 293


>gi|330008317|ref|ZP_08306192.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328535175|gb|EGF61676.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 295

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 132/295 (44%), Gaps = 5/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  ++ +F  V  +GSFT AA  L  +++ +S  +  LE E+G+ L  R  R L LT+ 
Sbjct: 2   LNLQRVTMFIAVVDAGSFTQAAAALGQTKAVVSFNVRQLENELGVTLLLRSTRRLRLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    + +  E  Q E++ S    SG+LRI TT + G  ++   L  F   +P +
Sbjct: 62  GVLFYQRGVALLNAAENLQDEVRASHSGLSGELRITTTPEYGAQVIIPALAAFARRHPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ +  +   D+  +  D AIRL   +  S     ++ +  +   A+P +L +     +
Sbjct: 122 RVRHVSSSHHADLISERFDVAIRLG-TLADSRYRATRIASFAILPVASPAWLASHPV-QT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +   I    L              +             +S  ++M + + G G+A
Sbjct: 180 LSDLAQAEWIIHERLPTPLRWQLRTDHQTEVDFAIASAPRFSADSATALMSFALAGCGVA 239

Query: 243 LLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP ++V        LV ++ +   P   VY  YP++     +++AF +F+  K 
Sbjct: 240 LLPAWLVVKKVAQRELVPLLPEYHFPQQGVYALYPDSQHLPTRVRAFIDFLREKV 294


>gi|260778215|ref|ZP_05887108.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606228|gb|EEX32513.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 310

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 131/303 (43%), Gaps = 12/303 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              +++L  F  +   G+ + AA  L +S +S+S  +  LE  VG  LF R  R ++ TE
Sbjct: 7   DITYNQLISFKTIYEEGNISKAARLLGISSASVSNSLKVLEKNVGEPLFNRTTRAISPTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L+ +       L      + + +  PSG L +    D+    L+  L +F L +P 
Sbjct: 67  VGRRLYELIHPSVDDLTNAIELVCDHNKAPSGSLSLNMARDIYDVFLKDVLMDFQLQFPT 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL----VTIHMHAYAAPHYLKNC 177
           IQ+++ L +        + D   R  + +  S +I ++L        +  +A+P Y+   
Sbjct: 127 IQLEITLSDSFDSQVEHHFDIGFRFGETVNDS-MIAKRLNSGEQRTELALFASPDYVSRF 185

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG----EPRISCLQVNSYLSIMQ 233
            EP S+ EL +H++I F       +       T D+        P  + + VN+   ++ 
Sbjct: 186 GEPTSVDELQQHSMIQFRAPSSHKLLPIRLHKTKDKSSELVSLLPSNTAMVVNNSKVMVD 245

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + G GI  L D  +KD   +  LV I++       TVY  Y    + T ++  F  ++
Sbjct: 246 CALKGIGIGYLMDASIKDELSSGQLVPILKQYWCEVPTVYMYYDPENRQTRRVACFLEYM 305

Query: 291 FLK 293
             +
Sbjct: 306 SQQ 308


>gi|167623149|ref|YP_001673443.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167353171|gb|ABZ75784.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 300

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 12/295 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   +  F  +  +GSF+ AA++L +  +++SR+++ LET +  +L  R+ R L LTE+
Sbjct: 7   LELQLIYQFVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRKLRLTEE 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    +  + ++      +   KP G LRIA  + +   +    L EF   YPDI
Sbjct: 67  GIALFQQYQSIISQFDSISGVTVD---KPEGTLRIAAPVSIISMIFIKALNEFCEQYPDI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ +  +N  ID+  +  D AI +      SS I   L  ++   +A+  Y+ +      
Sbjct: 124 QLHITQNNNVIDLIDEGVDVAI-VGGTQPDSSWISSSLGVLNYGLFASQQYIDSAPVLTH 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            QEL +H LI    L    ++  N              + L ++     ++  V   GI 
Sbjct: 183 PQELAEHALIKVWPLYNWSLKHPN-----GGSFYYDGKAKLTLSDLHGAVEATVDHGGIL 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P+  VK+      L R++ + I     +   Y +      K+K F  F+  KA
Sbjct: 238 YGPELFVKEELRAGKLQRLLPEWIGEKRRISILYHQRSHQPLKVKLFIEFMQSKA 292


>gi|15595230|ref|NP_248722.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|218888778|ref|YP_002437642.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|9945852|gb|AAG03422.1|AE004442_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|218769001|emb|CAW24759.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 304

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 117/298 (39%), Gaps = 6/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D LRVF   AR  SFT AAE+L  +Q ++S+QI  LE E+   LF R  RG+ LT
Sbjct: 6   MPLSLDLLRVFESAARQLSFTAAAEELGTTQPAVSQQIKRLEKELATPLFQRVHRGIVLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L R  +     ++     L          L++AT        L   L  F   +P
Sbjct: 66  DAGQLLLRHVAAGLETIDAGIAALGARQRHE--VLQVATDYAFAAYWLMPRLPRFHQAHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+   + +       D AI              +L    +    +P  ++  + P
Sbjct: 124 HLDVSLVTSERGLAGQRGDIDVAILFGDGRSKHG-EAHRLFREEVFPVCSPRLVEGLQLP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+   L +  ++           D+  L        +P  + L  ++Y  ++Q  + G G
Sbjct: 183 LAKAHLARLPMLHLKPAQHARWFDWPALFEALAIDRQPIPAVLSFDNYTLLIQAAIAGQG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A+   ++V    +   L R + +     +  Y   PE  +    +  F +++  + +
Sbjct: 243 VAIGWRHLVDGLLEQGLLCRPIGESCLSRYGYYAVLPERKRRQRLVDGFVDWLQAELQ 300


>gi|218662030|ref|ZP_03517960.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 298

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 128/297 (43%), Gaps = 11/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F  + LRVF   AR GSFT A ++L ++Q+++S QI  LE  VG  LF R  R + LTE
Sbjct: 6   QFPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    +E +  L       ++S     G L I++T       L   L  F L +P 
Sbjct: 66  TGERLAPKVTEAFAMLHDAMATARDS---VEGTLAISSTHTFASKWLAPRLGSFHLKHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++    +  ID S +  D AIR         L   +L+ +      +P   ++     
Sbjct: 123 IAVRFQASSDIIDFSREQIDVAIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAESAGGIR 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L K +L   GD+  K   +   +   D      R    Q+ S        + G G+
Sbjct: 182 EPRDLLKFDLFDAGDIWWKQWFEAAGVTETDLD----RRPRNQLGSQAVEADAAISGHGV 237

Query: 242 ALL-PDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+L P +   +     L +  E   +     +  YPE  +N  K+KAFRN+I  + +
Sbjct: 238 AILNPAFYAAEIALGRLYQPFELTRSDGKAYWLAYPENRRNLPKIKAFRNWILEEMQ 294


>gi|254473674|ref|ZP_05087070.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211957386|gb|EEA92590.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 298

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 140/296 (47%), Gaps = 11/296 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              WD + +F  VA +GS + AA+QL+ SQ +I RQ+  +E E+G+ LFYRH RGL LTE
Sbjct: 7   HLSWDLIGIFVAVAETGSLSAAAKQLNQSQPTIGRQVKAIEAELGVSLFYRHQRGLGLTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPS-GKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            G  L      ++       +  +E       G +R+  +  +   ++   + EF   YP
Sbjct: 67  DGEALLPHAKAMHAAAAQFLLHAEERKQSGFAGSVRVTASQVISNYVMPKLIAEFRQTYP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQI L+  +   ++    AD A+R+  P Q   ++ +K+    +  +A+  +L+    P
Sbjct: 127 EIQIDLVPSDDAQNLLFQEADIAVRMFTPTQ-LDIVAKKIGETPLGLFASKAFLERVGMP 185

Query: 181 LSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            + ++L   + I +   DLI + M++      VDR     R      +  ++  +    G
Sbjct: 186 KTREDLFALDWIGYDRSDLILRGMQEAG--LKVDRNFFSVR-----CDDRVTYWELVRAG 238

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+ L    I  ++ +LVR+  D   P+  V+   P  LK   ++K   +F+  K 
Sbjct: 239 CGVGLGQIGIGVEDDSLVRLELDDPLPALPVWLASPHTLKQIPRIKLLFDFLAEKL 294


>gi|117618071|ref|YP_855736.1| putative HTH-type transcriptional regulator YcaN [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117559478|gb|ABK36426.1| putative HTH-type transcriptional regulator YcaN [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 302

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 116/290 (40%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  +L VF  VAR  SF+ AA +L +S S++S  + GLET +G++L  R  R +  T+ G
Sbjct: 7   DLAELAVFAAVARHQSFSKAALELGVSASALSHSLKGLETRLGVRLLNRSTRAVVPTDAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          LE+   EL   S +P G+L+I+        LL   L ++++ YP +Q
Sbjct: 67  QRLLTQLLPTLSHLESALGELARHSDEPVGRLKISAPRGAIDELLAPVLIDYMVRYPRMQ 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++       +  D  D A+     +    +             A+P YL     P   
Sbjct: 127 VEVVEQELMPRLIEDGYDAALFYGDLLPKEMIGVPLGPPQRYLVVASPAYLAEHGTPQHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H  I +  L P     + +       +       L  ++    +     G G+A 
Sbjct: 187 RELTRHACIGYR-LTPSHHYRWAFAGEEGAMLEIEVTGPLTTSTPALYLGAAEAGLGLAY 245

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +  V        LV ++E            YP   +    L+A  + +
Sbjct: 246 CLEEEVSRQLAEGTLVSVLEPWCPTFVGFSLFYPSRHQLGNGLRALIDML 295


>gi|227820574|ref|YP_002824545.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227339573|gb|ACP23792.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
          Length = 311

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 131/289 (45%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF    R  +FT AA +L ++Q+++S  I GLE ++G+ LF+R  R + LTE G + H
Sbjct: 14  LVVFEAAGRHQNFTRAASELGMTQAAVSYAIRGLEDQLGVPLFHRVHRAVELTEAGERFH 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++  +  E++    + +  + +A +       +   L +     P+I +++ 
Sbjct: 74  ADVSVGLARIRKSAEEIRAKGRETN--VTLAASTAFASMWMLPRLNQLREDLPEIDLRIQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +D+D+  +     +R   P          L    ++A A P Y++    P S  +L 
Sbjct: 132 TSVRDLDLDEEPIPLGVRGGDPSHWPRYHAALLADEVVNAVATPAYIEAHGLPRSPADLL 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           KHNLI   + + +  +   W A+        +   L +N Y+ ++Q  + G GIAL  ++
Sbjct: 192 KHNLIHLEEPVRRACDWAEWFASAGLS-SPAQGKRLAINDYILVIQAVLAGEGIALGWEH 250

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++     +  LV +   V+      Y  +P + +   + +  R+++  +
Sbjct: 251 LIARQVQSGALVPVGGHVLRTGQAFYVVWPRSRELNAQARRIRDWLIDE 299


>gi|91781631|ref|YP_556837.1| DNA-binding transcriptional activator GcvA [Burkholderia xenovorans
           LB400]
 gi|91685585|gb|ABE28785.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 322

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 125/297 (42%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SF+ AA++L ++  ++S QI  LE E+G+ LF R  + + LTE G 
Sbjct: 9   LNAIKAFEAAARHESFSRAADELFVTHGAVSHQIRALEAELGVSLFARDGKRVRLTETGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L     +++    +   +L ++         +   +  F+  +P   +
Sbjct: 69  RYATHVRAALMALADATRQIRAGDRER--RLVVSMLSSFAARWVTPRIGSFIEAHPQWDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N   D + D  D AIR     + S L    L+        AP +    + P +  
Sbjct: 127 ELLSTNALTDFARDDVDVAIRFGLG-KYSGLHAELLLEEIFFPACAPDF-NGGKLPQTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+   D + +   D   L+       EP+   L  +S   ++Q  + G G+AL 
Sbjct: 185 DLANVPLLRSDDELWRPWFDAAGLSDW----PEPKRGVLYQDSSN-LLQAAIDGQGVALT 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         LVR+ +      +  YF  P  +  T +++AFR+++F +   ++
Sbjct: 240 RRSLAMHEIAAGRLVRLFDVDGPSPWQYYFICPPQMLETARVRAFRDWVFEEVGRFR 296


>gi|84684446|ref|ZP_01012347.1| transcriptional regulator, LysR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667425|gb|EAQ13894.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 298

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 122/294 (41%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SFDW++ R F V A  GS + AA  L L+Q ++ RQ+  L+ E+G+ LF R  RG+ LT 
Sbjct: 11  SFDWNRARAFLVTAEEGSLSAAARALGLAQPTLGRQVEALQEELGVTLFERAGRGMQLTP 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  +      +              +    G + I+ +      LL   +++     P 
Sbjct: 71  AGHAMIEHARAMGEAAGRLSNVAFGQNDTMEGPVTISASDAYAGLLLPPIIEKMTEAEPR 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + +++ N   D+    AD AIR  +P +   LI RK+       +A+P Y  +     
Sbjct: 131 ITVNVVVSNTASDLLRREADIAIRNFRP-EEPDLIARKIRDAEARMFASPDYAASLGPIQ 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +  K   +       +  +    L  +  PI E  +      ++L +      G GI
Sbjct: 190 SKDDFAKARFVGLD----RTGQFLGMLQQMGYPISEANVPV-HTENFLVMWALVKRGMGI 244

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++   I   +P +VR+ ED  T  F ++      L    +L+   +F+    R
Sbjct: 245 GMIDSVIGDADPGVVRLWEDEPTLGFPIWLVAHRDLHQNRRLRFVWDFLADALR 298


>gi|238763939|ref|ZP_04624896.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238697907|gb|EEP90667.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
          Length = 291

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 130/285 (45%), Gaps = 7/285 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  VAR GS   AA +L + Q+++ R+I+ LE  +G KLF R  +  TL+  
Sbjct: 1   MNWDDARFFLAVARKGSLRQAAHELQVDQATVGRRITTLEQVLGAKLFIRTPKAFTLSPL 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      + +  ++   +   S  +  G + +A T  + +  +   LK+    YP+I
Sbjct: 61  GEQVLAEVMVMENAAQSIGRKAANSDSRLQGMVSLAATDTIAEAFVLPALKQLHQHYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++++      DI+ +  D AIR  +P   + L+ ++L TI M  YA+  YL  C EP  
Sbjct: 121 TLRVLTGIDISDIAYNSVDLAIRGVRP-DDNELVIKRLATIEMGLYASRDYLARCGEPQR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +    H L+ F    P+     +W       +  P +  L+ NS   +      G GI 
Sbjct: 180 GEHFRGHELLLF----PRQSVPRHWQDLCGETLENPHV-VLESNSQQLLRAAARKGVGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           LL  ++  ++  LVRI  +       ++      ++   +++A  
Sbjct: 235 LLSCFLANNDDELVRIWPEQQDW-VDIWLVVHPDVQRAARVRAVI 278


>gi|307300197|ref|ZP_07579982.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306905086|gb|EFN35669.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 310

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 15/302 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++VF      GS   AA +L  S +++SR +S LE  VG++L +R  R L L+E
Sbjct: 1   MDRIDAMKVFVAAIDEGSLAGAARRLKRSPTAVSRALSFLEAHVGVELLHRTTRTLKLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V   LE   +        P G L I++   LG+ +L+  L +FL LYP 
Sbjct: 61  AGQRYAAACRRVLTDLEEADMLAGGERSAPRGMLTISSPPILGEEILRPILDDFLDLYPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREP 180
           + ++L+L ++ +++  +  D A+R+ + +  SSLI  +L   +     A+P YL N    
Sbjct: 121 VSVRLLLLDRFVNLVDEGVDIALRIGQ-LADSSLISTRLGGDVRRVVVASPRYLANHPRI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCV 236
               +L KH ++ F +   +      W  T  +    PR         VNS  +      
Sbjct: 180 GEPADLAKHQILAFTNFGLEA-----WSFTPAKGSSIPRTIQFTPRCIVNSVRAAAASAA 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+  L  Y V +   +  L  ++ D   P    +   P+   +  K++AF +F   +
Sbjct: 235 AGRGLTRLYSYHVAEYVRDGRLEIVLADAEHPPLPAHLIAPQGRMSVPKVRAFVDFAAPR 294

Query: 294 AR 295
            R
Sbjct: 295 LR 296


>gi|332992858|gb|AEF02913.1| LysR family transcriptional regulator [Alteromonas sp. SN2]
          Length = 321

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 7/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L+V   VA   S T AA QL +S S+ S  +  LE +VG +LF R  R + L+ +
Sbjct: 1   MKIEDLQVLLKVAELHSITAAANQLDISSSAASVALKRLEQDVGTQLFVRTTRKIRLSPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +   +  +    L+   + + E     +G++++A + ++G+NL++  L + +  + D+
Sbjct: 61  GERFLPLCQQALDLLQQGVMRISEEQQDINGEVKMAMSSEMGRNLMRVLLNDIMAEHEDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++L + +  +D   D  D A+R   +  +Q  ++   K+  I     A+P Y++   EP
Sbjct: 121 SVRLQVSDSRVDFYRDGVDVALRAMTKSAVQELNMYGFKICNIPHFICASPRYIEKYGEP 180

Query: 181 LSIQELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S +EL  HN + +   +L     + +               S   VN    + ++CV G
Sbjct: 181 TSPEELANHNALLYKLYELTHDGWDLYKGGEKGKEKFKVKVKSNRAVNDGDIVRRWCVDG 240

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            GIA      + ++     L R+M     P   ++   P     T  ++  R+
Sbjct: 241 VGIAKKSVIDIAEDLLAGRLQRVMPAYHVPLTEMWLVLPSRQLITPAIRLIRD 293


>gi|186477177|ref|YP_001858647.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184193636|gb|ACC71601.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 329

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 12/294 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +RVF  VA + SF  AA+QL +S + ++R I+ LE  +  +L  R  R L+LTE G+  
Sbjct: 6   AMRVFVRVAETQSFRRAAQQLKVSNALVTRSIATLEAHLHARLINRTTRNLSLTEAGTHY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L+  +  +  +  +P G LR+  T  L    L   L  +   YP ++I+L
Sbjct: 66  LEGCRGLLEELDHLEGSVAGTEREPGGTLRVVATGSLSPQALTHLLDGYRRHYPKVRIRL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSL------IQRKLVTIHMHAYAAPHYLKNCREP 180
            L  +   +  D  D  + +  P  +         I+    T  + A AAP YL    EP
Sbjct: 126 TLAERMPHLLEDGYDVGLFIASPAPAPGAAAEIDSIELSFATQRLVACAAPSYLAAHEEP 185

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +++  H+ I       +    ++++ +              VNS L +    + G G
Sbjct: 186 RRPEQMALHSCIATPSE-QRGPTVWHFIDSDGDAQPVTLEPSYTVNSPLLVRLAAIAGMG 244

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNF 289
           IA+LP+ +V D+     L RIM+          V   YP       K +AF ++
Sbjct: 245 IAVLPESLVADDFATGALKRIMQGYTVDESQAKVSLVYPRRRHLPAKTRAFVDY 298


>gi|241205691|ref|YP_002976787.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859581|gb|ACS57248.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 299

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 124/294 (42%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            WD  R F  V + GS + AA +L L+Q +I R +  LE  +G +LF R   GL  T+  
Sbjct: 6   SWDFYRSFLTVLQQGSLSAAARELGLTQPTIGRHVDALELAIGAELFTRSPNGLLPTDAA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +                  +G +R++ +  +   +L   L      YP++Q
Sbjct: 66  LALKPYAETLAATAAALLRTASGQREHVAGTVRVSASEVIAVEVLPAILGPLQETYPELQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   +   D+    AD A+R+ +P Q ++L+ R++  I +  +A   YL+    P ++
Sbjct: 126 IELSASDMIEDLMNREADIAVRMAEP-QQAALVVRRIGDIPLGFHAHRRYLERHGIPQTL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H LI F              A  D           + +S L+ +     G GI L
Sbjct: 185 ADLTNHRLIGFDRQTAYVRMAMKRYAVPDIKF------SYRTDSNLAQLSAIRAGVGIGL 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               + + NP+LV ++ D        +    E+LK + + +A  + +    +D+
Sbjct: 239 CQIGLARGNPDLVHVLPDAFAIPLGTWVAMHESLKTSPRCRATFDALVKGLQDY 292


>gi|209884027|ref|YP_002287884.1| transcriptional regulator of LysR family [Oligotropha
           carboxidovorans OM5]
 gi|209872223|gb|ACI92019.1| transcriptional regulator of LysR family [Oligotropha
           carboxidovorans OM5]
          Length = 305

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 141/291 (48%), Gaps = 12/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD  R+F  VA++GS + AA  L ++ S++ R+++G E  +G++LF R   G  LT  G
Sbjct: 7   NWDDYRLFLAVAQAGSLSGAARLLGVTHSTVFRRLTGFEKTLGVRLFERLPSGYVLTAAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +   T+ +  ++   +  +     + SG++RI  T  L  +LL  +L  F + +P I+
Sbjct: 67  EAMQHATARIDDEIAAVRRRVTGQDQRLSGQVRITATDMLAISLLPPHLAAFRVAWPGIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++ +  +D++   AD A+RL  P+Q  +L+ R++  +    Y A  Y    RE +  
Sbjct: 127 LELLVSDTRLDLTRREADIALRLGNPVQ-ETLVGRRIGRLAFAVYCAAAY---HREGIG- 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+ I FG       +         RP         + NS  + +    +G G+A 
Sbjct: 182 EDLASHDWIGFGSAHAPLRQVLAEWLPGLRPQ-------FRTNSITAAIAAARVGIGLAA 234

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP  I   +  L R+          ++    E L++T +++AF +F+    
Sbjct: 235 LPCAIADPDSGLRRVAPFPGDFRLDLWLLTHEDLRHTARIRAFVDFMAEAL 285


>gi|170697308|ref|ZP_02888401.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137762|gb|EDT05997.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 300

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 122/300 (40%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F  AA     S S +S  +  LE ++G++L +R  R ++ T
Sbjct: 1   MQVDLGDLNAFVAVARAKGFREAARLADASASGLSEAVRRLEAQLGVRLLHRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    +    ++E     +     KP G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGARLLARLTPALSEVEAALDVVNTFREKPVGTLKLNVPMSAARLVLPSIVPRFLDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCRE 179
           +I+++++ D   +DI     D  IR  + ++   +          HA  AAP YL     
Sbjct: 121 EIRLEVVADESFVDILAAGCDAGIRYDERLEQDMIAVPIGPRSQRHATAAAPAYLDRRGR 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVL 237
           P   ++L  H  +  G      M  + +    +    EP   +      +   I+     
Sbjct: 181 PAHPRDLLDHACLR-GRFASGAMPAWEYERNGEVVRVEPSGPLVVQIGGAVDLIVDAACA 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GI  L +  ++    +  L  +++    P    Y  YP        L+AF +FI  +A
Sbjct: 240 GLGIVHLYEDWLRPYFASGALEPVLDGWWRPFSGPYLYYPGRRFVPAPLRAFVDFIKAEA 299


>gi|299068231|emb|CBJ39450.1| transcriptional regulator, LysR-family [Ralstonia solanacearum
           CMR15]
          Length = 310

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 123/284 (43%), Gaps = 6/284 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA + SF  AA QL ++ S ++ ++  LE  +   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVAETRSFAEAARQLGVTNSVVTHRVQQLERFIEAPLFHRSTRHVRLSEVGETYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +     L     +++     P+GKLRI        +     L  F   YPDIQ+ ++
Sbjct: 67  KQCAHAVGMLSDLTDQMRGLRATPAGKLRIRMLPGYALHHFAQPLARFGAQYPDIQLDVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+  +D   +  D   ++  PI  S LI+++L  +     A P Y++    P    +L 
Sbjct: 127 VDDGVVDPIAEGFDVVFQIFPPINDS-LIEKRLFILRRLFCATPDYVEEYGMPQQPADLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H L  +     +    F+    V   +  P    ++ NS   +  Y + G+GIA LP  
Sbjct: 186 RHALALYSGYPTRKHWVFSRNGEVAAELDLP--EQVRSNSVHLLRDYALTGAGIACLPTL 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +  D+     LV ++ D     F     YP   +   K+ A  +
Sbjct: 244 VASDDLLAGRLVPVLPDYDLAPFHFSAVYPATQRQAVKVCALID 287


>gi|320173208|gb|EFW48419.1| LysR family transcriptional regulator YcjZ [Shigella dysenteriae
           CDC 74-1112]
          Length = 299

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L E   +PSG +RI T     + +L   ++ FL  +P+I IQL
Sbjct: 68  LSVLGPMLHDIDSALASLSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             +  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDNQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|293605888|ref|ZP_06688258.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292815675|gb|EFF74786.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 309

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 129/298 (43%), Gaps = 8/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  +G+ + AA +L ++++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDTKSLTLLVEILDAGNLSEAARRLKMTRANVSYHLNQLERSVGMQLVRRTTRHVEATEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL++    +  +L   +  +      P GK+R++     GQ ++   L EF   YPDI
Sbjct: 61  GLKLYQHGRSIQDELVAARESVDTLGKTPQGKVRLSVPSGYGQFVMTPWLLEFKQAYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N   D+  D  D A+R+       +L+ R+L  +   A A+  Y      P  
Sbjct: 121 VLDVLFENSVDDLLRDEVDIAVRIMSE-PPQNLVARELGQVRYVACASKAYADAKGLPQR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +  +I+   +I + +    +     R       + +   +Y  +      G G+ 
Sbjct: 180 PEDLAQLPVIS-AAVIGRPLRLSAYYGGQPRQHVVLEPTVI-SRNYAFLRDAIRAGLGVG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++PDY+V D+     L+  +           +Y  Y     +   +     FI  +A+
Sbjct: 238 VVPDYVVHDDIARGELLPALPQWRLSIFGRGMYMLYMPNRHHPRAISMLIEFILERAQ 295


>gi|194291621|ref|YP_002007528.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225525|emb|CAQ71471.1| putative transcription regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 344

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 9/291 (3%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VA  GSF+ A E+L + +S++SR +  LET++  +LF R  R   LT +G +    
Sbjct: 37  AFMAVATEGSFSRAGERLGIGRSAVSRNVQKLETQLSTRLFLRTTRSTRLTREGERFFEN 96

Query: 70  TSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
             +   ++     ++       P G LRI+     G+ ++   L  F   YP+I + L+L
Sbjct: 97  CHQGVAQIVEAMNDMLALRQGPPRGLLRISAATGFGRKVVAPLLTRFSAAYPEISLDLLL 156

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           D++ +D + +  D A R  + I+ SS I R+L+ + M   A+P Y      PL++ +L +
Sbjct: 157 DDRPLDFAAEKIDVAFRNGR-IEDSSTIARQLIPMQMAVCASPAYAARHGLPLTLDDLVR 215

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I       + +E   W   VD  + +      L  N    ++   + G G+A +  Y
Sbjct: 216 HQCIHTRVGGARVLE---WEFKVDGHLRKLLPAGRLTFNDPDLVLAAVLDGLGLAQMAGY 272

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            V +      LV  +          Y CY        +++ F +F+    R
Sbjct: 273 QVCEPIARGALVTALGRHAPDDRGHYLCYLSRQHLPSRIRVFVDFMTDAIR 323


>gi|150395591|ref|YP_001326058.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027106|gb|ABR59223.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 298

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/291 (20%), Positives = 113/291 (38%), Gaps = 11/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L     +AR G+F  AA  L +S +++S  I  LE  +G++LF R  R ++LT+ G
Sbjct: 5   SLKELEAVIAIARRGTFRAAAIDLDMSTTALSHTIGRLEAGLGVRLFNRTTRSVSLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +  +     L      ++     PSG +RI       + ++   + EFL  YPD+ 
Sbjct: 65  RLFVQQVAPSLQDLYAALDSVRAQRETPSGTIRINAAPFAARAIISPLVLEFLRRYPDMN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++ + K +DI  D  D  +R+   + S  +              +P Y +   +P+  
Sbjct: 125 VDIVTEGKMVDIVKDGFDLGVRVAGLVPSDMIAVSLGQPQRHAVVGSPEYFERHGKPVVP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA- 242
            +L  H  I                      +       + ++         +  +GI  
Sbjct: 185 ADLLNHRCIRVRLPDGSSFRWR--FEKNGEQVQIDARGPISLDEAGLTRTAVLESAGIGY 242

Query: 243 -----LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
                +LPD  V    ++VR++ED   P   +   YP     +  ++AF  
Sbjct: 243 VFEQDILPDIEV---GSVVRVLEDWTPPYPGLCLYYPGRRNLSAGVRAFLE 290


>gi|33592700|ref|NP_880344.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33572346|emb|CAE41903.1| probable LysR family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332382115|gb|AEE66962.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 295

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 4/288 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
             V+A + SFT AA++L +S+S IS ++  LE E+G+ L  R  R +  TE G+ L    
Sbjct: 2   LAVLADTRSFTAAAQRLGVSKSLISLRMKALEQELGVSLLLRTTRSVRPTEAGALLVERA 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 LE +  E++  +  P G+LR+   + LG+  L   L      +PDI +++ L +
Sbjct: 62  RPALDTLEDSLGEVRNLARAPRGRLRLTAPVALGRQHLGIWLARLGQHFPDIALEVYLSD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +++  +  D A+R    +  +  + ++L     H  A+P YL     P    EL +H 
Sbjct: 122 RFVNLRQEGYDFALRHADQVSDA-YVSKRLCATRAHLVASPAYLARHGRPAHPSELARHR 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + +          F         +    + CL VN+   + +    G GIA++PD+ + 
Sbjct: 181 CLLYRGDERSPQWSFAPRQGRGAAVHVKPVDCLSVNNSELLRESVAHGLGIAMVPDFSLG 240

Query: 251 DNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           D  +L  ++           ++Y   P +   T   +     +    R
Sbjct: 241 DCADLEPVLPQWDCYAGFGRSLYLLKPFSATPTEAHRVVEQALAEHFR 288


>gi|254252288|ref|ZP_04945606.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124894897|gb|EAY68777.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 286

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 106/248 (42%), Gaps = 7/248 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   + +F   A   + + A  +  +S +  S +I+ LE ++G +L +R  R ++LT+
Sbjct: 10  PLDLLDVALFVRAALLANVSAAGREFGVSAAVASARIAQLERQLGARLLHRTTRRISLTQ 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +    +  +  +     +P GKL+++ +   G+  +   +  FL  YP 
Sbjct: 70  DGEVFIARAEALLSAADAARASVGHGRTEPYGKLKVSMSSSFGRQHVAPVIPAFLRRYPS 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++ +D+  +  D AIRL   ++ S+L+ RKL         +P YL     P 
Sbjct: 130 VSLDLRLSDEIVDLVDEGYDVAIRLGA-LKDSTLVARKLAANRRVVCCSPAYLAKHGAPR 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  +  GD             T   P+       L  ++  +I +  V G GI
Sbjct: 189 HPADLAQHECVILGDQRDWS------FVTPQGPLTIRVGGRLVASNGEAIREALVDGFGI 242

Query: 242 ALLPDYIV 249
           A+   + V
Sbjct: 243 AIKSTWDV 250


>gi|271499940|ref|YP_003332965.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270343495|gb|ACZ76260.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 300

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 7/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS+T AA  L +S S+IS+ I  LE  +G+ LF R  R L LT  G 
Sbjct: 10  LTGLIAFARAGALGSYTAAARSLSVSPSAISKSIQRLEKHLGVTLFTRTTRSLVLTAAGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +LH    ++    E  +   + SS +P+G LRIA ++ +G +++   L EF  L+P + I
Sbjct: 70  ELHERALQLLRDAEEIEQIAKRSSAEPAGMLRIAASLPVGIHMIAPVLAEFCALHPKVTI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ + I  +  D A+R+   +  S+L+ R+L    +  YA+P YL +   P    
Sbjct: 130 DLRLSDRVVSIVDENIDIAVRIGD-LADSNLLSRRLPPYQIGCYASPEYLAHSPLPTHPN 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I          + F W   + +R +     S + V++  +++     G+GI +
Sbjct: 189 DLIGHKTINL--RYQNTGQLFRWPFRIGEREVEIVPPSTVIVDASEAVIAAMAAGAGIGM 246

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             D++      +  LV ++ D       +   + E+ ++   ++AF + + 
Sbjct: 247 ASDFMATSLVRDKKLVPVLADFAVERRNISAVWHESRRSNPAVRAFLDHML 297


>gi|146343235|ref|YP_001208283.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146196041|emb|CAL80068.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 305

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 122/288 (42%), Gaps = 7/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + V    A +GS + A+  L L  +++SR+++ LE  +   L  R A+GL LT  G 
Sbjct: 8   LDAMEVVLAAADAGSLSKASRALGLPLATVSRKVAELEAHLKATLLIRSAKGLELTPAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  ++   +        +P G L +   I  G+      +  FL  YPD+ +
Sbjct: 68  SYVAAARAILEQVAEAERAASGEYSEPKGDLVVTAPIMFGRLHALPVVTRFLGAYPDVAV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L++ ++      D  D A+R+ + +  S LI  +L T+     A+P YL       +  
Sbjct: 128 DLVMTDRVAHFLDDQVDVALRIGQ-LPDSRLIATRLGTVRHVVCASPDYLAANGCLAAPD 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H++++F  +  +    F         I     + L VN+  + +   + G+G+   
Sbjct: 187 DLARHSVVSFQSVSTESAWPFE---RGGSEITAGFRARLGVNTIDAAIDAGLSGAGLVRA 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y V D+     L  ++E        V+  Y    +   KL+AF +F
Sbjct: 244 LSYQVVDHVRSGRLQLVLETFEPEPRPVHLVYDGQTRLPLKLRAFVDF 291


>gi|160899718|ref|YP_001565300.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365302|gb|ABX36915.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 308

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 119/294 (40%), Gaps = 7/294 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  LR F ++ R GS   AA+Q+ ++  ++SR++S LE  +G++L  R  R + LT 
Sbjct: 1   MDGFSDLRFFSLLIREGSLAAAAQQMGVTPPAVSRRLSLLERRLGVRLLQRTTRRIHLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G       + +   LE  +  +  +     G L IA T+  G+  L   L  F   YP+
Sbjct: 61  EGEAYLLDGARILADLEALERSISGTRATARGPLSIACTLGFGRQRLAPALSAFARAYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+QL L ++ +++     D  +R    +  S+L  R L+       AAP YL    EP 
Sbjct: 121 VQVQLQLTDRPVNLVEQGFDAVVRFGA-LPDSALTARLLLPNRRVLCAAPSYLNAHGEPR 179

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              +L  H  I     D                          +  N   + + + + G 
Sbjct: 180 QPADLQAHRCIVIRESDETYGSWRLSRRTRQGLSEHNIKVNGVMSTNDGAAALAWALDGH 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI     + V        L  ++     P+  +Y  +    + + +++A   F+
Sbjct: 240 GILQRSLWDVAAPLAAGALREVLPQWQLPAADIYLVHATRSEMSARIRALTGFL 293


>gi|160899980|ref|YP_001565562.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365564|gb|ABX37177.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 300

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 140/298 (46%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  +RVF  V  +  FT A ++L ++ S+ SR +  LE+E+G +L  R++RGL+LT+
Sbjct: 1   MDRWQAMRVFCGVVDAQGFTAAQDRLGMTHSTASRHVKWLESELGTQLLQRNSRGLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +    ++  +L+  +  L +   + +G LRI   + +G   L   L EF   +P+
Sbjct: 61  AGRSYYLSCVQLLEQLDAAEAALAQRRARVAGVLRITLPLAVGAIELGDWLPEFEQQFPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL+  ++ +D+  +  D A+R+ + +  S L  R L    +   A+P YL       
Sbjct: 121 LELQLLCTDRLVDLVAEGVDAAVRISRQLPDSGLQARLLTHSPLVLVASPAYLMRQGVVQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  + F          ++ ++           + L+ +S  +I +    G GI
Sbjct: 181 VPGQLAEHRALAFA--AGPAPLRWSVVSGQGAVTEVQPHTALRTDSVATIFEAARAGRGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A L  + V+   +   LVR++       ++ +  YP        ++AF +F+  + R 
Sbjct: 239 AALTWHTVRSAVERGQLVRVLPCFHLGQYSYHALYPRTRHLRPAVRAFVDFMARRYRQ 296


>gi|62262179|gb|AAX78051.1| unknown protein [synthetic construct]
          Length = 333

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LET+    LF R+ R + LTE G 
Sbjct: 30  LERLKIFIKAAHLKSFSKAAKAIGISPPVVSKQIQILETKYRKSLFNRNTRTVHLTEYGK 89

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 90  LLYEKASLILNELEATEEKIFAEDILIDSELKISAPNSFGIKYLCNIFSKFAIDYPKYKL 149

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+++     A+  YLKN   P +I+
Sbjct: 150 NINLSDSYINIIDEDFDLVIRIGA-LDDSNLITKKLMSMPSLLCASEQYLKNYGIPKTIK 208

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  I + +       +   L +V++         +  NS   ++Q C+ G GIA L
Sbjct: 209 DLENHLFIQYNN---HSSSNRIILESVNKTEIINVRQRIVTNSAGMMLQSCLDGLGIAKL 265

Query: 245 PDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           P + + D   +  LV ++ +   P    +Y           K++    +I
Sbjct: 266 PLFEIIDKLHDKKLVHLLPNTRNPIEKNLYLISSRDKYRLKKVRLLSAYI 315


>gi|56708327|ref|YP_170223.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670798|ref|YP_667355.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224457451|ref|ZP_03665924.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370949|ref|ZP_04986953.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875149|ref|ZP_05247859.1| lysR transcriptional regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604819|emb|CAG45900.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110321131|emb|CAL09283.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151569191|gb|EDN34845.1| hypothetical protein FTBG_01695 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841148|gb|EET19584.1| lysR transcriptional regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159564|gb|ADA78955.1| LysR transcriptional regulator family protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 298

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LET+    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKAIGISPPVVSKQIQILETKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 64  LLYEKASLILNELEATEEKIFAEDILIDSELKISAPNSFGIKYLCNIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+++     A+  YLKN   P +I+
Sbjct: 124 NINLSDSYINIIDEDFDLVIRIGA-LDDSNLITKKLMSMPSLLCASEQYLKNYGIPKTIK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  I + +       +   L +V++         +  NS   ++Q C+ G GIA L
Sbjct: 183 DLENHLFIQYNN---HSSSNRIILESVNKTEIINVRQRIVTNSAGMMLQSCLDGLGIAKL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           P + + D   +  LV ++ +   P    +Y           K++    +I
Sbjct: 240 PLFEIIDKLHDKKLVHLLPNTRNPIEKNLYLISSRDKYRLKKVRLLSAYI 289


>gi|313107722|ref|ZP_07793904.1| LOW QUALITY PROTEIN: putative transcriptional regulator, LysR
           family [Pseudomonas aeruginosa 39016]
 gi|310880406|gb|EFQ39000.1| LOW QUALITY PROTEIN: putative transcriptional regulator, LysR
           family [Pseudomonas aeruginosa 39016]
          Length = 309

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 122/292 (41%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +
Sbjct: 10  DEVATLLALAEHGSFAAAGRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++
Sbjct: 70  LASRFRQAVDLLDEAEHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                + +DI  +  D AIR+ + +  S L+ R+L        AAP YL+    P    +
Sbjct: 130 TDYSERFVDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLERHGVPRIPAD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F  L          L   D          +  N   +++     G GI    
Sbjct: 189 LAAHNCLGFSGLHSYPEWK---LTRQDEQQPVRVRGSMVSNDNEALLCAARQGLGIFAAG 245

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++++  +     LVR++ +        VY   P A   T    AFR ++  +
Sbjct: 246 EWLMSRDLEAGRLVRVLPEWQLDADAGVYLVRPSARYATAAASAFRQWVEAR 297


>gi|209546207|ref|YP_002278097.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539064|gb|ACI58997.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 317

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 133/301 (44%), Gaps = 10/301 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT 
Sbjct: 6   QFTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTA 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +  + E  + +L + S+   G +R++             L  F   +P 
Sbjct: 66  MGTRFVETAERMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLPRFAAQHPH 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+   + + +S   AD ++ L +P +       +L   H+  Y +  YL       
Sbjct: 126 LSLELVTIQQIMSLSRKEADLSVVLDEP-KGGPYFAERLTDYHLQIYGSRDYLAKAPVIT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L +H  +++ + +       ++L+ V      PRI    Q +S  + +     G G
Sbjct: 185 CRDDLLEHPFVSYIEEMIFA-PGLDYLSDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--DWK 298
           + +LP +     P LVR++   I      +      LK   +++A  +F+    R  D +
Sbjct: 239 LCILPYFFASRYPELVRVLPAEIDLKRHYWITCHRDLKQAPRVRAVIDFLREAVRGEDAR 298

Query: 299 F 299
           F
Sbjct: 299 F 299


>gi|115350760|ref|YP_772599.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115280748|gb|ABI86265.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 328

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 118/291 (40%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE+ +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEQQSFRRAAHHLGVSNALVTRSIAMLESHLNTRLIHRTTRNLSLTEAGLRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  +  +P+G LR+  +  L    L   +  F   YP++++QL 
Sbjct: 67  DGYRALLEEFDHLEASVAHAVREPAGTLRVVASGLLSPLALTPLVSSFRHRYPELRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  I     +  + +LI   L +    A AAP YL+   EP +  +L
Sbjct: 127 VAEGPLDVLDSGYDVGIVTGNRLDGNPTLIGHALPSAPFVACAAPAYLERRGEPRAPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +       +    +  +                VN    +    V GSGI +LP+
Sbjct: 187 PGHDWVALAP--HQHPPAWRLVGHDGATHSITVRPTCTVNQLGLVHAAAVAGSGIVVLPE 244

Query: 247 YIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             V        LVR++       P   +   YP       + ++F      
Sbjct: 245 PCVAGALATGALVRLLPTYQIDDPDAQLSLVYPNRQYVPARTRSFIEHALE 295


>gi|107102204|ref|ZP_01366122.1| hypothetical protein PaerPA_01003255 [Pseudomonas aeruginosa PACS2]
 gi|254235663|ref|ZP_04928986.1| hypothetical protein PACG_01597 [Pseudomonas aeruginosa C3719]
 gi|126167594|gb|EAZ53105.1| hypothetical protein PACG_01597 [Pseudomonas aeruginosa C3719]
          Length = 309

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 122/292 (41%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +
Sbjct: 10  DEVATLLALAEHGSFAAAGRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++
Sbjct: 70  LASRFRQAVDLLDEAEHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                + +DI  +  D AIR+ + +  S L+ R+L        AAP YLK    P    +
Sbjct: 130 TDYSERFVDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLKRHGVPRIPAD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F  L          L   D          +  N   +++     G GI    
Sbjct: 189 LAAHNCLGFSGLHSYPEWK---LTRQDEQQPVRVRGSMVSNDNEALLCAARQGLGIFAAG 245

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++++  +     LVR++ +        VY   P A   T    AFR ++  +
Sbjct: 246 EWLMSRDLEAGRLVRVLPEWQLDADAGVYLVRPSARYATAAASAFRQWVEAR 297


>gi|160897641|ref|YP_001563223.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363225|gb|ABX34838.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 311

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 124/288 (43%), Gaps = 9/288 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ ++ VF  V + GS + AA  L +S S++S+Q+  LE + G+ L +R  R + LT+ G
Sbjct: 3   DYKRMAVFAAVVQHGSMSAAARALGMSPSAVSQQVRQLERDGGVTLLHRSTRQIALTDTG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++  + +       + EL  +  +P G+LR++ T+      +   L  +L  +P ++
Sbjct: 63  ERYYQQCAAMAQAASQARAELAAARDEPGGELRLSATVGF-ARHIAPALGHWLARHPALR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR---EP 180
           + L +D+  ID+     D A+R  + +  S    R+L  +     A+P +++        
Sbjct: 122 LHLDVDDAPIDLIQSRIDLALRFGR-LADSGWAARRLGAMRNWLCASPAWIQAQGGSAAW 180

Query: 181 LSIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                L     +    +   + +                 +  +  N+ LSI Q C  G 
Sbjct: 181 RHPAPLASMRWLGLAREGQGQALRAEARHPDTGETYSLQVLPHVASNNQLSIQQMCEAGL 240

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           G+ALL    V D      LVR++ D       ++   P+      K++
Sbjct: 241 GLALLGSMDVADTVAEGRLVRLLPDWDFGGLDIWAVTPQRQAQPAKVR 288


>gi|163843353|ref|YP_001627757.1| LysR family transcriptional regulator [Brucella suis ATCC 23445]
 gi|163674076|gb|ABY38187.1| transcriptional regulator, LysR family [Brucella suis ATCC 23445]
          Length = 310

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 121/293 (41%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  SF+ AA++L L+Q ++SRQ++ LE ++G  LF R +R + L+E G   
Sbjct: 14  ALAAFDAVARHESFSAAADELSLTQGAVSRQVASLEEQLGAALFDRTSRNVVLSEAGRVY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        +    +++          L +A     G   L   +  F+  YP I +  
Sbjct: 74  LQAIGPALASIRAASLQVMSQMRGT--TLNLAFLPTFGTRWLIPRIPRFVAQYPHIILNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   +  D AI + +P    +     L+   +    +P +LK+     S  +L
Sbjct: 132 APRIGQFDFDREGLDAAIHIGQP-DWPNAECTFLMDETVAPVCSPAFLKDHPV-TSPHDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L             F  L      I  P    ++   + ++ Q CV G G+ L+P 
Sbjct: 190 LRLPLFNMASRPGAWEHWFRSLG-----ITTPVPGGMRFEQFSNVSQACVAGLGMGLMPL 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 245 FLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEVRN 297


>gi|170739803|ref|YP_001768458.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194077|gb|ACA16024.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 299

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 133/294 (45%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D + V   V   GS +  A +L L  +++SR++S LE  +  +L  R +R + LTE G 
Sbjct: 4   FDAMAVLLAVVEEGSLSAGARRLRLPLTTVSRKVSDLERHLRARLLTRTSRRVDLTEAGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  ++   +         P G L     +  G+  L   + +FL+ YP+I +
Sbjct: 64  AYVAAARRILEQVREAERAATGEYSVPRGDLSATAPVVFGRRHLVPIVTDFLVAYPEIAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L ++ +++  D+ D A+R+  P+  S+L+  ++  +     A+P YL     P + +
Sbjct: 124 RLLLIDRSVNLVEDHIDVALRIG-PLADSALVATRVGLVRRVVCASPEYLARRGTPAAPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+L+TF          F   AT   P+  P    L VN+  + +     G G+  +
Sbjct: 183 DLAAHDLVTFEGFPATTDWRFRRGAT---PLSIPIRPRLAVNAAEAAVDAARAGLGVTRV 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y   D   +  L  ++E        V F +PE  +   K++AF ++   + R
Sbjct: 240 LSYQAADEIRSGALRVLLEAYEPAPLPVSFVHPERGQLPLKVRAFLDWAIPRMR 293


>gi|256061172|ref|ZP_05451325.1| LysR family transcriptional regulator [Brucella neotomae 5K33]
 gi|261325176|ref|ZP_05964373.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261301156|gb|EEY04653.1| transcriptional regulator [Brucella neotomae 5K33]
          Length = 310

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 120/293 (40%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  SF+ AA++L L+Q ++SRQ++ LE ++G  LF R +R + L+E G   
Sbjct: 14  ALAAFDAVARHESFSAAADELSLTQGAVSRQVASLEEQLGAALFDRTSRNVVLSEAGRVY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        +    +++          L +A     G   L   +  F+  YP I +  
Sbjct: 74  LQAIGPALASIRAASLQVMSQMRGT--TLNLAFLPTFGTRWLIPRIPRFVAQYPHIILNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   +  D AI + +P    +     L+   +    +P +LK+     S  +L
Sbjct: 132 ATRIGQFDFDREGLDAAIHIGQP-DWPNAECTFLMDETVAPVCSPAFLKDHPV-TSPHDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L                L      I  P    ++   + ++ Q CV G G+ L+P 
Sbjct: 190 LRLPLFNMASRPGAWEHWSRSLG-----ITTPVPGGMRFEQFSNVSQACVAGLGMGLMPL 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 245 FLIRSEIENGQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEVRN 297


>gi|311107410|ref|YP_003980263.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310762099|gb|ADP17548.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           141 [Achromobacter xylosoxidans A8]
          Length = 306

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 143/293 (48%), Gaps = 5/293 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF     +GSF  AAE+L+L++S++ + I+ LE  +G +LF+R  R  +LT+ G 
Sbjct: 10  LSGIEVFVQAVEAGSFALAAERLNLTRSAVGKSIARLEARLGARLFHRTTRQQSLTDDGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +        +L+T + EL     +P G+LR++  +  G++ +   L+E  L +P +QI
Sbjct: 70  AYYDRCVRALAELQTAEAELDSGRREPQGRLRVSAPLVFGRHCVAPVLRELALQHPQLQI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +++ +D+  +  D  IR+ +   S+SL  R+L    M   A+P Y++    P ++ 
Sbjct: 130 EISFNDRVVDLIEEGYDLGIRVGELPDSASLAARRLGMQTMGIGASPAYIQAHGRPTTVD 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H+ I +          +      D+ +      CL+++   +I    + G+G+A L
Sbjct: 190 ELTQHSCIAYTHN--GIERGWTVKGADDQVMQLRLRPCLRLDDLQAIADAAIAGAGLAWL 247

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +++        L  +M      +  V+  +P+A     K +A  + +  + 
Sbjct: 248 PCWMLTHYVRTGELDVLMHGDRLAAQEVHAVWPQARYLPSKTRAAIDALAARV 300


>gi|171319706|ref|ZP_02908796.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095047|gb|EDT40060.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 309

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 122/272 (44%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     ++
Sbjct: 24  RQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTDQM 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E    P+G+LRI        +     L EF   YP IQ+ +I++++ +D   +  D A 
Sbjct: 84  RELRATPTGRLRIQMLPGFALDHFGVPLAEFHRRYPGIQLDIIVNDRVVDPVEEGFDIAF 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           ++  PI S SLI+R+L  +     A+P YL+    P   +EL +H    +     +    
Sbjct: 144 QIFPPI-SESLIERRLFVVRRLFCASPAYLEAHGAPQHPRELLQHTTALYSGYPSRN--- 199

Query: 205 FNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIME 260
             W  T    + E  +  + + NS   + +Y + G G+  LP  +  +      LV I+ 
Sbjct: 200 -RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASEALVAGRLVPILT 258

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D      +    YP   +   K+KA   F+  
Sbjct: 259 DFQIAPLSFAAVYPATQRQALKVKALVEFLAE 290


>gi|114328505|ref|YP_745662.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316679|gb|ABI62739.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 299

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/297 (28%), Positives = 135/297 (45%), Gaps = 11/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  VA  GSF+ AA  +++SQ  ISRQI  LE   G +L  R  R L LTE+G 
Sbjct: 5   LRAMRVFLRVAELGSFSAAARGINMSQPMISRQIGMLEDHFGTQLVQRSTRHLHLTEEGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +  +LE  +  +   +  PSG++R+++    G   L G +  F  LYPDI I
Sbjct: 65  ALREHARRIIDQLEAAEEAIGRGARPPSGRVRLSSPTAFGLY-LSGQMAAFHQLYPDIDI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ +++  D  D A+ +   +  +S+I RK+ +      AAP Y+    EP S  
Sbjct: 124 ALRLSDETVNLIEDGLDLALYVGG-VPETSMIVRKIGSARRLLVAAPCYMDGRAEPSSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L   + +T+          F    T       P  S    +S  +  +  + G+GIA L
Sbjct: 183 QLKDFDCLTYAGPGSDTAWAF---ITGGVSSPLPVHSWFSSSSSEATRRAALAGAGIAAL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P Y+V+ +     L+ ++         V+  Y        + +   +FI   AR +K
Sbjct: 240 PHYMVEQDLQEGRLIELLPQDRMEPLAVFVAYASTRHLAPRCRVLIDFI---ARTFK 293


>gi|262194951|ref|YP_003266160.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262078298|gb|ACY14267.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 303

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 136/293 (46%), Gaps = 14/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + V+  V  +GSFT AA+ + +S+ ++S +I+ LE  +G++L  R  R L  T+ G++
Sbjct: 6   DDMVVYAAVVEAGSFTRAAKVVGMSKQAVSDRIARLEQHLGVRLLERTTRTLRPTDLGAR 65

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               +  V   +   + EL      PSG LR++     G+  L   + + +L YPD++I+
Sbjct: 66  YFEHSRAVAAIMSAGERELGRLKESPSGTLRLSIPSLYGRRFLAPVVSDLMLTYPDLRIE 125

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            IL ++ +D+  +  D A+R+      SS+I RKL + ++H  A+P +L   R       
Sbjct: 126 AILTDRYVDLVAEGFDAAVRVG-IRNDSSVIARKLGSSNVHCVASPGFLTKHRV-AEPAS 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L     I               + T  + + EP    L VN     ++  + G G+A LP
Sbjct: 184 LTGLPCIGMQAKETWS------IGTRSKCVVEP---ALVVNDLEVGLEAAIAGVGVARLP 234

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++++    +  L  + + ++    T+Y  YP     +  L AF   I    +
Sbjct: 235 AFLLRPYTASGALSVLFDGLVVARRTLYAVYPSRELRSPALMAFLERIVAHFQ 287


>gi|157368892|ref|YP_001476881.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320656|gb|ABV39753.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 314

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 129/293 (44%), Gaps = 6/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T 
Sbjct: 1   MDQIQAMRIFTRIVELGSFSRAAERLQLPRATVSNALKRLEQRLGVRLLIRTTRQVQVTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  ++   ++   LE          ++PSGK+RI     L + ++   L +F   YPD
Sbjct: 61  EGTLYYQRCVQLLGALEEADTLFSHHKLQPSGKVRIDMPHSLAREIVIPALDDFYQRYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L  ++  +D+  +  DC +R  +  +  SL+ R++  +     A+P YL     P 
Sbjct: 121 LTLALGANDTHVDLLREGVDCVLRAWE-TEDDSLVARRIAMLPQLTCASPGYLAAFGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI +L +H  + +  L         +       + E   + L V+   +    C  G G+
Sbjct: 180 SIDQLQQHQAVGYFSLASNRNYPLEFCRNGKVELRE-LPARLSVSGADAYTSGCRAGMGL 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                Y +        LV ++ +   P   +Y  YP       +++   +++ 
Sbjct: 239 IQAAHYSLAPWLQKGELVEVLAETPPPPMPIYIMYPPGRFLAPRVRVLIDWLI 291


>gi|187920519|ref|YP_001889551.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718957|gb|ACD20180.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 302

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 119/290 (41%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  VA   SF  AA QL ++ S+IS+ I  LE  VG  LF R  R + LTE G 
Sbjct: 12  LDGVEAFLSVAEHRSFRRAAAQLGVTPSAISQTIRMLEARVGAALFVRTTRSVGLTEAGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        + +L       +E   KP+G LR++        +L+  +  F   YP++++
Sbjct: 72  RFLSRAKPAFEELIGASELARELGQKPAGLLRLSVPSAAVPIVLEPLIASFCRAYPEVEV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++   + +D++ +  D  +R+ + I++  +  R            P Y + C  P  I 
Sbjct: 132 EVVASAELVDLAAEGFDAGVRMGQFIEADMVAVRLTPPFPFMVVGNPDYFRRCGRPERID 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H+ +              W         E  +S  L    Y +++   + G G+A 
Sbjct: 192 DLRSHHCLRMR---RSNGAIAPWPFVDGHKAVEAIVSGPLIAQDYPTLLGAAIRGVGLAH 248

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P  I      +  +  ++      +  V+  +    +   KL+AF   +
Sbjct: 249 VPGPIAAAPIADGRVETVLMPFAVTTPGVFLYHSGRHQALPKLRAFIEHV 298


>gi|114561995|ref|YP_749508.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333288|gb|ABI70670.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 299

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 124/288 (43%), Gaps = 14/288 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L +F  VA+  SFT AA  L +S+  +S QI  LE EVG  L  R  R + LT QG 
Sbjct: 12  FERLFLFSEVAKQLSFTEAAASLGISRGYLSEQIRQLEKEVGRPLLIRTTRSVRLTPQGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +     +V   L      ++  +   SG++ I     L Q  L     EF  L+P +  
Sbjct: 72  MILSSMGQVKADLLMLDKRIRHDNDDISGRISITAPSQLTQRHLLNICHEFTQLHPQVHF 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +       D++ +  D A R        +++ +KL        AAP YL+    P SI+
Sbjct: 132 SIDCSYTLHDLTRNDFDLAFRATA-TPPQNMVAKKLFDYQQICCAAPAYLQQHGTPDSIE 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +T         E  +W       +     SCL VN    + Q  +LG GI + 
Sbjct: 191 DLHHHQCLT-------ATEQTHWTFNAQPILIN---SCLSVNDNHMLKQLALLGRGIIVG 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P+Y+V        L  I+      + T Y  +P+ ++ + +L +F  F
Sbjct: 241 PEYLVDKEIQAGTLQAILTTETMNASTAYLIHPQLVQQSARLSSFIQF 288


>gi|167856830|ref|ZP_02479465.1| transcriptional regulator, LysR family protein [Haemophilus
           parasuis 29755]
 gi|167852046|gb|EDS23425.1| transcriptional regulator, LysR family protein [Haemophilus
           parasuis 29755]
          Length = 243

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 6/248 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  VA +GSFT  AE+L +S+  ISR ++ +E  +  +LF R  R + LT+
Sbjct: 1   MDKLTAIKVFLTVAETGSFTATAERLEISKPMISRYVALMEEWLNARLFQRSTRKVALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       + +     + E+     +  G LR+ ++   G   L   +  FL L+P 
Sbjct: 61  AGEQAVLFCQRIANLTAEMEQEMMAQQGELRGALRVTSSQTFGAYHLVQMVNRFLQLHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+L+++ +D+  +  D AIR+       + I RKL   H    A P YL     P 
Sbjct: 121 LNIQLLLNDQTMDLISERIDLAIRITN-TPDPNFIARKLADCHSLLVATPEYLTKFGTPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H+ ++  ++  K  +        ++ +     S    N   +++   +  +GI
Sbjct: 180 QPEDLYQHHYLSHHNINRKAWK----CTQGEQEVLLDLNSRFTTNDTQALLNSVLDSNGI 235

Query: 242 ALLPDYIV 249
           A+LP Y++
Sbjct: 236 AMLPKYML 243


>gi|330821500|ref|YP_004350362.1| transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327373495|gb|AEA64850.1| transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 323

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 126/299 (42%), Gaps = 5/299 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +RVF  V   G+ + AA  L L Q ++S +I  LE  +G++L  R  R ++ T
Sbjct: 1   MDL-LAAMRVFVRVVERGNLSRAARDLGLGQPAVSDRIERLEQHLGVRLLLRSTRAVSCT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++GS  ++ +  V    E  ++ +        G++RIA    +G  LL G +      +P
Sbjct: 60  DEGSLFYQKSKLVLDAAEEARVAVAPGDRAVRGRIRIAAPHGVGDALLPGVVAVMREQHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++++L+++  D   +  D ++RL + I   + I R+L  +     A+P YL     P
Sbjct: 120 QLHVEMVLNDEPTDPVTEGVDLSLRLGR-IGEGNFIARRLGHVRRVLVASPGYLDAAGRP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +H  I    L       F   + +      P      V+ +  + Q  + G G
Sbjct: 179 EAPADLVRHPFIRVAGLFSDGQLRFAAASPLPASPAAPINIVTTVSHWGPVHQLLLAGCG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I +L + +  +      LV ++     P F ++   P       + +A    +     D
Sbjct: 239 IGVLQEIVCAEALATGRLVELLPGHTVPGFELHALLPVTRPVPARTQAVLELLEAHLPD 297


>gi|260461073|ref|ZP_05809322.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259033107|gb|EEW34369.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 301

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  VAR  SFT AAE+L ++Q+++S QI  LE  VG  LF R  R + LTE G 
Sbjct: 15  LQAIRVFEAVARHLSFTKAAEELAMTQAAVSYQIKVLEERVGAPLFLRRPRQIALTEAGQ 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    SE +  L         +     G L + T +    N L  +L  F + +P + +
Sbjct: 75  RLAPAVSEAFAILGQA---YAAARGGADGVLCVTTVLTFASNWLAHHLGSFQIAHPSLAV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++  D + +  D AIR     +   L   KL+        +P    +        
Sbjct: 132 RLETSSRLTDFAREDVDLAIRSGGG-KWPGLEAYKLLDADFTPMLSPKLAASIGGVREPA 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +  ++  GD+     + F         + +   S +   +Y +     + G G+A+L
Sbjct: 191 DLLRLPILDPGDI--WWTQWFEAAGVHSHDLAKRPGSSMGAQAYEA--NAAIAGHGVAIL 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + K    +  L++  + V       +  YPEA +N  K++AFR+++  +
Sbjct: 247 TRALFKAELADGRLIQPFDLVGDDGHAYWLVYPEARRNVPKIRAFRDWLLAE 298


>gi|107026949|ref|YP_624460.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691854|ref|YP_837387.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896323|gb|ABF79487.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116649854|gb|ABK10494.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L+  ++E Q  + +P G LR+        N L   +  F   +P+
Sbjct: 61  TAERIYERCAAVLDELDALEVEAQTHTREPEGLLRLVAHTTAALNRLVPLIAGFKSAHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L  + +D+  +  D  I +   + S S + R +  I +   A P YL+    P 
Sbjct: 121 VRLDVTLTERPVDLVGEGYDIGIVVPYMLTSESTVVRLVERIPVVIVATPAYLQAHARPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  +     + +    F         +  P    +  NS +   +  +   GI
Sbjct: 181 TPADLANHPFVPISPSLRRPALSFR---VDGNLLTVPFRFDISSNSPVFNREMVMHDFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +V+    +  LV+++ED         +   Y        K+KAF ++
Sbjct: 238 GVVPKTLVQAELASGALVQLLEDADLVDAFVEIKLAYANRALLPAKVKAFIDY 290


>gi|218673979|ref|ZP_03523648.1| transcriptional regulator, LysR family protein [Rhizobium etli
           GR56]
          Length = 298

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 127/297 (42%), Gaps = 11/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F  + LRVF   AR GSFT A ++L ++Q+++S QI  LE  VG  LF R  R + LTE
Sbjct: 6   QFPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    +E +  L       ++S     G L I++T       L   L  F L +P 
Sbjct: 66  TGERLAPKVTEAFAMLHDAMATARDS---VEGTLAISSTHTFASKWLAPRLGSFHLKHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++    +  ID S +  D  IR         L   +L+ +      +P   ++     
Sbjct: 123 IAVRFQATSDIIDFSREQIDVGIRWGDG-NWPGLALHRLMGLEFTPMLSPKLAESAGGIK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L K +L   GD+  K   +   +   D      R    Q+ S        + G G+
Sbjct: 182 EPRDLLKFDLFDAGDIWWKQWFEAAGVTDTDLD----RRPRNQLGSQAVEADAAMSGHGV 237

Query: 242 ALL-PDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+L P +   +     L +  E   +     +  YPE  +N  K+KAFRN+I  + +
Sbjct: 238 AILNPAFYAAEIALGRLYQPFELTRSDGKAYWLAYPENRRNVPKIKAFRNWILEEMK 294


>gi|86356379|ref|YP_468271.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280481|gb|ABC89544.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 293

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 132/290 (45%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P++
Sbjct: 61  GEVFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P +   L+  KL    +  YA+  YL     P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERP-EQGRLVSSKLTDYTLGLYASRDYLAAHGRPGD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L  H  I + + +      F         +     +  ++++ +   +    G+GI 
Sbjct: 180 VEALKAHPRIGYVEDL-----LFTASLNFSGEVMRSWDAGFEISTAIGQTEAVRSGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +L DYI +  P L RI+ ++       +  Y E  ++  ++++  +F+  
Sbjct: 235 ILHDYIARQYPELQRILPEISI-RRAYWTTYHETARDLVRVRSVVDFLQE 283


>gi|194364417|ref|YP_002027027.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347221|gb|ACF50344.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 305

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 5/295 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F   A +GSFT AAE+LHL+ S++ + ++ LE  +G +LF R  R L LTE G 
Sbjct: 7   LRGIEAFVATAEAGSFTAAAERLHLTSSAVGKTVARLEARLGARLFERSTRRLRLTEAGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    V  +L   +  L   +  P G+LR+      G+  +   L +    +P ++ 
Sbjct: 67  GFYRTCVRVLGELADAESVLAAHADAPVGRLRVDAPATFGRLKVWPLLLQLAAEFPRLRP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           Q+   ++ ID++ D  D A+R+  P    ++L  R L    +   A+P YL+    P S 
Sbjct: 127 QVTFSDRFIDLAEDGVDLAVRIGGPEPLPATLGSRLLGHECLRFCASPAYLQRHGLPTSG 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+ + FG      +  +       R       + L V S  + +     G GIA 
Sbjct: 187 AELADHDGVLFG-RADGSIGPWQVADGGQRSAPLQARARLVVGSAEAQVAAVEAGFGIAQ 245

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L  ++V D     +LV I+  +      +   +P+  +   ++    + +    R
Sbjct: 246 LATWLVDDALARGSLVSILPALDCRGLPLRLLWPQGRQRLPRVDVALDRLGAGLR 300


>gi|126738045|ref|ZP_01753766.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126720542|gb|EBA17247.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 292

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 137/294 (46%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+    + SG+L + T++    +LL   L EF  ++P + 
Sbjct: 63  QDLLRVAQATDDQFSQLVGRLKGQGDEVSGEL-VVTSLSSMSHLLVPVLSEFQQMHPGLV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+ +   +   +    A  A+R          + +  +   +  +AAP Y++       +
Sbjct: 122 IRYLTGERLFRLEYGEAHVALRAGNAPDQPDNVVQPFLKHRIGLFAAPSYVERRGMLKGL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  ++  +   +   +  WL    R          + +  ++I +  + G+GI  
Sbjct: 182 EDLKNHQFVSADNENSRAPFN-KWL----REHTADETIIFRCSDGVAIREAIMAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  +     P+LV++M+       +++      L  T K+++F +F+  +A++W
Sbjct: 237 MSMWEAARRPDLVKMMDPQKEWEGSIWLVTHVDLHRTNKVQSFLSFLKERAKEW 290


>gi|114569714|ref|YP_756394.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114340176|gb|ABI65456.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 302

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 129/292 (44%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW    V   V+ +GS T AA +L +SQ +++R++  LE+  G  LF R      LT  G
Sbjct: 3   DWSDYLVCLAVSEAGSLTAAAHELGVSQPTVTRRLQALESRFGEPLFEREQGQTRLTPLG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K+    + +  +    +          SG + ++ +  LG + L   L+ F    P I 
Sbjct: 63  RKVTAHAARMRDEASAIERAAMAQDQSLSGLVVVSASEGLGADWLPLALESFQAANPGIG 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + + N   +++   AD A+R   P    SL+ R+  T+    YAA  YL     P ++
Sbjct: 123 IDIAIKNNSANLADREADIALRWNGPGTQQSLVGRRGATVGAGLYAAKSYLDKHGRPNAV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  + +        + F W +T       PR    + NS  S ++    G G+ +
Sbjct: 183 EDLADHAGVGWS-----IGDYFGWPSTQTGAPVLPRHVSFKSNSPASHVKGLEAGFGVGV 237

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
               + +++  L RI+ D  + S  ++    E ++ + +++A  + I  + +
Sbjct: 238 TSHRLARNSIYLERILPDFES-SLDLWVVAHETVRKSARVRAAYDHIIAQMK 288


>gi|15597877|ref|NP_251371.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9948753|gb|AAG06069.1|AE004696_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 309

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 122/292 (41%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +
Sbjct: 10  DEVATLLALAEHGSFAAAGRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++
Sbjct: 70  LASRFRQAVDLLDEAEHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                + +DI  +  D AIR+ + +  S L+ R+L        AAP YLK    P    +
Sbjct: 130 TDYSERFVDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLKRHGVPRIPAD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F  L          L   D          +  N   +++     G GI    
Sbjct: 189 LAAHNCLGFSGLHSYPEWK---LTRQDEQQPVRVRGSMVSNDNEALLCAARQGLGIFAAG 245

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++++  +     LVR++ +        VY   P A   T    AFR ++  +
Sbjct: 246 EWLMSRDLEAGRLVRVLPEWKLDADAGVYLVRPSARYATAAASAFRQWVEAR 297


>gi|325123412|gb|ADY82935.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 292

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 130/295 (44%), Gaps = 10/295 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F V      F+ AA+QL+L +S+IS++++ LE ++G+ L +R +R   L+E G  
Sbjct: 2   NDVYLFVVAVEHQGFSAAAKQLNLPKSTISKRVAILENKLGLTLIHRSSRSFVLSESGKL 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++       +    +  L     +PSG +R++ ++ + Q LL   L E    YP + +Q
Sbjct: 62  FYQHAKNAVDEFRYAEENLLIQQQEPSGVVRLSASVPIAQYLLSDCLPELAERYPKLLLQ 121

Query: 126 LILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + + ++ +D+  +  D  IR   +P+  S LIQR L    + A AAP YL       + +
Sbjct: 122 VEVTDRYVDVMSENFDIVIRSHFQPLPDSGLIQRVLKNDKIIAVAAPTYLMKSAPIHTPE 181

Query: 185 ELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L KH  I     + P   ++ N    + RP           N    +      G GI L
Sbjct: 182 DLLKHEGIWPELQMNPWYFQNINGQKEIVRPNI-----RFVANESEILKGAAKRGLGITL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP+    +     +L+ ++ D    S T              +    +F+  K +
Sbjct: 237 LPETFCMNELSEGSLIHVLPDWSAGSVTTSLLMLTRRGLLPSVNITADFLVEKLK 291


>gi|262281533|ref|ZP_06059312.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262256992|gb|EEY75731.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 297

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 11/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +A+ G+ T AAE L+ S++ +SR +  LE     +LF R+ R ++LT 
Sbjct: 1   MDTLKAIQVFVSIAQHGNLTKAAEHLNYSRAMVSRYLEHLEHTFSTRLFQRNTRKISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K       +  + +  Q     +  + +G +R    + L Q  +   +++F   +P 
Sbjct: 61  AGEKALLYCENILQQQQLLQEL--AAPEQHNGTIRFTCGLFLFQLGVGECIRQFKKQHPH 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ  + L    ID+     D A+R+ + +    LI R +  I     A P YLK      
Sbjct: 119 IQFDVYLTENTIDLIDAQVDLALRITQKVAD-GLIARPVCQIESVFCAHPDYLKQHSPLS 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L ++  +          + +       +P   P     + N   ++   C+   G+
Sbjct: 178 HPRQLIQYECLAHHS----QHQYWTLFDEEQQPQNYPLNVTFKSNDVNAVYDMCLHAQGV 233

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP  +VK +     LV + ++   P   +   Y          + F  F+  
Sbjct: 234 AMLPSLLVKKDLKEKRLVPLFKNFSAPELILSVVYASRQHLPKITQEFIAFMIE 287


>gi|307313748|ref|ZP_07593366.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306899238|gb|EFN29875.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 297

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 12/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L+ F  VA +G  + AA +L +S+S +SR++  +E E+G++L  R  RG  LTE 
Sbjct: 1   MDIEDLQTFVAVADAGGVSAAARRLGISKSIVSRRLLRVEAELGVQLLARTTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       +    +++  + E    + +  G+LR+A  +  G       L +    +P +
Sbjct: 61  GITFRDHAARASAEIDAAK-ETILPTGELRGRLRVAMPLTFGPTHFAPVLADMARQHPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I     ++ +D+  +  DCAIR    +Q S+LI +++  IH    A+P Y+K    P +
Sbjct: 120 HIHTSYSDRFVDLIAEGFDCAIR-GAYLQDSNLIAKRVGPIHGKLVASPDYIKAHGSPET 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL  H  +  G    + M+        D+ +        + +S  ++      G GIA
Sbjct: 179 LDELVTHQALMQGTEAWQFMDG-------DKIVTVQPQGRFKADSATALAAAAAAGLGIA 231

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD I      +  LV IM     P    Y   P     T K++A    +  
Sbjct: 232 WLPDCITYGYVASGALVPIMTRYPVPPGAAYVVRPPGQHPTRKVRALTEMLTE 284


>gi|117618645|ref|YP_855289.1| regulatory protein, LysR:LysR, substrate-binding [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560052|gb|ABK37000.1| regulatory protein, LysR:LysR, substrate-binding [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 289

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 133/288 (46%), Gaps = 7/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR G+   AA  L + Q+++ R+I+ LE  +G KLF R  +   L+  
Sbjct: 2   INWDDARFFLALARQGTLRGAAGVLGVDQATVGRRITALEQNLGSKLFIRTPKLYDLSPL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +    S +   ++  + +         G++RIATT  L Q  +   L      +P I
Sbjct: 62  GEAMLADASAMEQAIKAIERKASADDQSLCGEVRIATTDTLAQAFVLPALTLLRERHPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L       DI+   AD AIR      +  L+ ++L TI M  YA+  YL     P S
Sbjct: 122 RLSLQTAVSVSDIAYREADLAIR-GLCPDNDELVIKRLTTIEMGLYASRDYLARHGTPKS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +H L+ F     + +   +W +    P+ EP +  LQ N+ L ++     G GIA
Sbjct: 181 GHGLSQHALLLFA----RELVSRHWHSLCGEPLHEPNV-VLQCNAQLLLLAAARQGLGIA 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LL  ++    P+LVR++  +  P   ++      L+   +++A  + +
Sbjct: 236 LLSTFLADKEPDLVRVLPSLCDP-VDIWLVLHPDLQKASRVRAVVDAL 282


>gi|120612550|ref|YP_972228.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120591014|gb|ABM34454.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 311

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 125/290 (43%), Gaps = 5/290 (1%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  VA  G F  AA  L LS ++++R ++ LE  +G +L  R  R ++LTE G      
Sbjct: 9   VFQSVADEGGFAAAARALDLSPATVTRLVADLEDHIGTRLLQRTTRKVSLTEAGEAYLLR 68

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   ++      Q  + + +G LR+     L  ++L   +  F   +P + +++ + 
Sbjct: 69  VRSILADVDEAFAVAQAHTSEIAGVLRLLAPPALAVHILAPLVSGFRQAHPRVTLEIHV- 127

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D  +   D  +       ++++I R +V++     A+P YL+    P   ++L  H
Sbjct: 128 DSSLDPPIGDYDITLLGADERFNANIIARPIVSLDGIVCASPEYLRAHGIPQLPEDLKHH 187

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDYI 248
             +       +           +    E  +  + V N   ++++  + G+GI+  P  +
Sbjct: 188 QCLLRRRSETRPGVMRLLEGGDESRAVEVAVQPVCVSNHIDTLLRATLDGAGISSQPLDL 247

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                 +  LVR++E   T  FT+Y   P       + +AF +F+  + R
Sbjct: 248 TAPYLRSGRLVRVLEPWTTGRFTLYAALPSRKFMPARTRAFLDFLGQRTR 297


>gi|264677447|ref|YP_003277353.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262207959|gb|ACY32057.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 311

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 137/295 (46%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  V  +GSFT AA++L ++++ +S+Q++ LE E    L  R  R +  T+ G
Sbjct: 17  NLKRLAYFAAVVETGSFTAAADRLGITKAVVSQQVARLEREFHTTLLTRTTRKVVPTDAG 76

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++  + +  +      EL E + +PSG LR+   +D G   +   + EF   YP  +
Sbjct: 77  RIFYQRCASILKEAGDAFDELGEVAAEPSGTLRLTAPLDYGITAVVPAITEFTRHYPQCK 136

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +  ++ +D+     + AIR+   +   ++  R++ +      AAP   +   +    
Sbjct: 137 VDAVFSDQPLDLMSGQVELAIRVGW-LSHLNVQARQIGSFRQLLVAAPSLRRQVTQLKQP 195

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q + +   +    L   C   F+      + +       + +++ L++ +    G+G+++
Sbjct: 196 QHISELPFVANTALREPCNWSFSRSELERQSVTVH--PAISLDATLAVREAVRHGAGLSV 253

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LPD+ V D+     L++++     PS  V+  +P A     K+KAF + +  + R
Sbjct: 254 LPDFAVADDLKSGALIQVLPSWSLPSGGVHAVFPTARFRPAKVKAFVDLMQEQIR 308


>gi|126724486|ref|ZP_01740329.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126705650|gb|EBA04740.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 299

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 10/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DW  ++ F  VA+ GS + AA +   SQ +I R I  LE +  + LF R +RG  LTE
Sbjct: 7   SLDWSLVQSFLAVAQEGSLSAAARKSGQSQPTIGRHIKSLEAQFDVPLFKRVSRGYELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L R   E++       +     S + +G +RI  +  +  +LL   + +    +P 
Sbjct: 67  VGQNLLRPAQEMHRAALNLNLSAAGHSTELAGTVRITASDLVAHHLLPPIIAKMRTEHPG 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I ++  N   ++    AD A+R+ +P Q   +I R L  + M  Y A  YL+    P 
Sbjct: 127 ISIDVVASNSSDNLLYREADIAVRMYRPTQ-LDVITRHLGGLAMGVYGAKSYLEEHGRPQ 185

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + ++L +H  + +   D I + M +  W AT +       +   + +      Q    G 
Sbjct: 186 TAEDLFQHAFVGYDRDDQIIRGMREMGWPATRE-------MFQTRCDDQAVYWQLVCAGC 238

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+ +    I      + +++ D+  P   V+    EAL+ T +++   + +  
Sbjct: 239 GLGITQRSIGDQKIGVEQVVPDLPIPKLPVWLTAHEALRQTPRIRVIWDHLVA 291


>gi|83645987|ref|YP_434422.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634030|gb|ABC29997.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 302

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 121/293 (41%), Gaps = 5/293 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +FDW++ R F V A  GS + AA  L +SQ ++SRQ+S LE E+ + LF R ++GL LT 
Sbjct: 14  NFDWNQARAFLVTAEEGSLSAAARALGISQPTLSRQVSALEKELSVALFERGSKGLELTP 73

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +        +     +    G + I+ T      +L   + +   LYP 
Sbjct: 74  NGLALLGYVRAMGEAAGGLSMAASGHARSVEGTIVISATEVTAAFILPSIIMKLRALYPG 133

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I +I  N   D+    AD AIR  +P Q   LI RKL  I    YAAP YL     P 
Sbjct: 134 LHIDIIASNIASDLKRREADIAIRAFRPTQ-PDLIARKLSDIKAALYAAPSYLDRIGRPK 192

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +E    + + F       ++              P    ++ + +L+  +    G GI
Sbjct: 193 TPKEFSNAHFLGFSTNNDAYIKALKEHGFELSDKNFP----VKTDGHLAHWEMTKQGVGI 248

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++P  I      + R +          +      LK   +++   +F+  + 
Sbjct: 249 GVMPIEIGDTEQTVERAIPHYEVFKGESWLVSHRELKMNLRVRTVFDFLVGEL 301


>gi|332534800|ref|ZP_08410625.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035764|gb|EGI72250.1| transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 295

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 122/292 (41%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           ++   L  F  V  +     AA +  LS +++S ++S LE E+   L +R +R + L+  
Sbjct: 2   YNLSDLETFIAVVENKGVLAAAREQRLSPATVSHRLSKLERELATVLVFRDSRRVRLSPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +   L   +  +   S   SG LR+     +    +   L EF   YP++
Sbjct: 62  GEIFYTRVGAIIEALHDAEHSIGARSSSVSGLLRVTMPPWVFSKYVMPKLNEFEQAYPEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++  ++ +  +++  D  D AIR+ K +  S L+ RK+V       AAP Y++    P +
Sbjct: 122 KLDFLITDHFVNVVDDAQDVAIRVGK-LNDSGLLSRKIVNNSRILCAAPSYIEKYGMPEN 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +H  +                    +       +   +++  ++ Q  + G GIA
Sbjct: 181 LTQLSEHYWVCLP-----WQRQLKLFDEHKKIHTFNAKTRFTISNSDNMTQAAIAGHGIA 235

Query: 243 LLPDYIVKDNPN---LVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + ++     LV +M  V+      V+F  P+    T K   F +F+
Sbjct: 236 IKSKIAINEDLKNGILVEVMPGVMAQDDAPVWFLRPQNSLTTRKTDVFYDFM 287


>gi|299534177|ref|ZP_07047528.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298717824|gb|EFI58830.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 309

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 137/295 (46%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  V  +GSFT AA++L ++++ +S+Q++ LE E    L  R  R +  T+ G
Sbjct: 15  NLKRLAYFAAVVETGSFTAAADRLGITKAVVSQQVARLEREFHTTLLTRTTRKVVPTDAG 74

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++  + +  +      EL E + +PSG LR+   +D G   +   + EF   YP  +
Sbjct: 75  RIFYQRCASILKEAGDAFDELGEVAAEPSGTLRLTAPLDYGITAVVPAITEFTRHYPQCK 134

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +  ++ +D+     + AIR+   +   ++  R++ +      AAP   +   +    
Sbjct: 135 VDAVFSDQPLDLMSGQVELAIRVGW-LSHLNVQARQIGSFRQLLVAAPSLRRQVTQLKQP 193

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q + +   +    L   C   F+      + +       + +++ L++ +    G+G+++
Sbjct: 194 QHISELPFVANTALREPCNWSFSRSELECQSVTVH--PAISLDATLAVREAVRHGAGLSV 251

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LPD+ V D+     L++++     PS  V+  +P A     K+KAF + +  + R
Sbjct: 252 LPDFAVADDLKSGALIQVLPSWSLPSGGVHAVFPTARFRPAKVKAFVDLMQEQIR 306


>gi|119774165|ref|YP_926905.1| LysR family transcriptional regulator [Shewanella amazonensis SB2B]
 gi|119766665|gb|ABL99235.1| transcriptional regulator, LysR family [Shewanella amazonensis
           SB2B]
          Length = 300

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 118/294 (40%), Gaps = 12/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + +F  +  +GS +  A++L +  +++SR++S LE   G +L  R  R + LTE+G
Sbjct: 8   ELELIYLFVQLVDAGSLSAVADRLSMPVATVSRKLSRLEENRGRQLLMRSTRKIRLTEEG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+         +        +      G LRIA  I +   +    + EF   YP I+
Sbjct: 68  MALYER---YKSLVSAVDALYGDGEDPLEGTLRIAAPISIISMIFMKTINEFRREYPGIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   N+ +D+     D AI +      SS I   L T+     A+P YL+    P   
Sbjct: 125 LHITQKNEVVDLIDKGIDIAI-VGGIQPDSSWIAVPLGTLDYRLVASPGYLQRRGMPTHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H++I         + +++              + L +      +  CV   GI  
Sbjct: 184 SSLAAHDIIKV-----WPLYNWSLRHPQGEAFYYDGPASLTLTDLQGAISACVDDGGILY 238

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            P+   K       L+ ++ D    +  +     +  +   K+KAF +F+  +A
Sbjct: 239 GPELFFKQELQRGLLLPVLPDWRGETRRISILCHQRQQQPAKVKAFIDFMKSRA 292


>gi|34499745|ref|NP_903960.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34105596|gb|AAQ61950.1| probable transcriptional regulator LysR-family [Chromobacterium
           violaceum ATCC 12472]
          Length = 306

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 127/284 (44%), Gaps = 9/284 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VAR GSF+  A +   + S+I+R+I  LE  VG  L  R  R L LTE G  
Sbjct: 8   EHLAIFVEVARGGSFSAVARRHGATPSTITRKIDMLEEFVGTNLLVRSTRALLLTEAGET 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V   L     E+   S    G LRI+     G+  +   L +    +P ++I 
Sbjct: 68  LFARGVSVLEALTDIHNEVIALSDSMYGTLRISCLPTFGKLHVLPWLADLQQRHPSMRID 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  + S++  D AIR+ K ++ SSL  +++ T      A+P YL+    P  +++
Sbjct: 128 LDLTERLTNPSVERLDAAIRIGK-LKDSSLFAKQIGTQRWVICASPDYLRQRGHPSDLED 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +  LI              W   V++   +   +  + + + ++ Q  + G G A LP
Sbjct: 187 LRRLRLI----DKLHDPHSMCWRRLVEKGHIDQIEAAFRCDDFEAMRQAALCGLGAAFLP 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           D+++  +     L+R+ +D       ++       K + KL+ F
Sbjct: 243 DWVIAQDLAAGALIRLFDDPEGREDGIHLV-RALPKMSAKLEVF 285


>gi|209547992|ref|YP_002279909.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533748|gb|ACI53683.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 293

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 132/290 (45%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P +
Sbjct: 61  GEVFLASAERMETEMLAAQASLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P +   L+  KL    +  YA+  YL +   P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERP-EQGRLVSSKLTDYTLGLYASRDYLASRGTPSD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+ L  H  I + + +      F         +     +  ++++ +   +    G+GI 
Sbjct: 180 IEALKAHPRIGYVEDL-----IFTASLNFSGEVMRSWDASFEISTAIGQTEAVRSGAGIC 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +L DYI +  P L RI+ D+       +  Y E  ++  ++++  +F+  
Sbjct: 235 ILHDYIARQYPELQRILPDISI-RRAYWTTYHETARDLVRVRSVVDFLQE 283


>gi|146284551|ref|YP_001165504.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gi|145320684|gb|ABP62830.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 275

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 8/267 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + +  + F  VAR  SFT AA QL +SQS++S  +  LE ++G++L  R  R +++TE G
Sbjct: 5   NVNDYQAFIAVAREKSFTKAAAQLGVSQSALSYTVRTLEADLGLRLLTRTTRSVSVTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E+    L     KP+G +RI         +L   L   +L YPDI 
Sbjct: 65  ERLLSRVGPHFDEIESEIAALSGLREKPAGTVRITAVEHAADTILWPKLVPVMLEYPDIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLS 182
           I++I +    DI  +  D  +RL + +    ++   L          AP Y      P +
Sbjct: 125 IEIISEYGLKDIVAERYDAGVRLGEQV-DKDMVSLPLARDFRFAVVGAPSYFMGKAFPGT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            ++L+ H+ I     +P     + W    D    + RI      ++   + Q  + G G+
Sbjct: 184 PRDLNDHSCIRL--RLPTHGGFYTWEFRKDETEIKVRIDGRATFSTINMMRQAALDGLGL 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITP 265
           A LP   V+   +N  LV+++ D   P
Sbjct: 242 AYLPLDTVENYLENGMLVQVLTDWCPP 268


>gi|218682783|ref|ZP_03530384.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 894]
          Length = 298

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 126/297 (42%), Gaps = 11/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F  + LRVF   AR GSFT A  +L ++Q+++S QI  LE  VG  LF R  R + LTE
Sbjct: 6   QFPLNALRVFEAAARLGSFTKAGGELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIVLTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    +E +  L       ++S     G L I++T       L   L  F L +P 
Sbjct: 66  TGERLAPKVTEAFAMLHDAMATARDS---VEGTLAISSTHTFASKWLAPRLGSFHLKHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++       ID + +  D  IR         L+  +L+ +      +P   ++     
Sbjct: 123 IAVRFQATADIIDFTREQIDVGIRWGDG-NWPGLVLHRLMGLEFTPMLSPKLAESAGGIK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L K +L   GD+  K   +   +   D      R    Q+ S        + G G+
Sbjct: 182 EPRDLLKFDLFDAGDIWWKQWFEAAGVTETDLD----RRPRNQLGSQAVEADAAMAGHGV 237

Query: 242 ALL-PDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+L P +   +     L +  E   +     +  YP+  +N  K+KAFRN+I  + +
Sbjct: 238 AILNPAFYAGEIALGRLYQPFELTRSDGKAYWLVYPDNRRNVPKIKAFRNWILEEMK 294


>gi|170700304|ref|ZP_02891317.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134791|gb|EDT03106.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 307

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 125/290 (43%), Gaps = 7/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+F  V   G+ + AA+ L L Q ++S ++  LE  +G+KL  R+ R ++ T
Sbjct: 1   MDL-LAAMRIFVRVVERGNLSRAAKDLGLGQPTVSDRVDRLERFLGVKLLLRNTRAVSCT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++ +  V    +  +  +   +    G++RIA     G+ +L   L       P
Sbjct: 60  DEGILFYQRSKIVLDAADEARAVVTLGNNIVRGRIRIAAPHGFGEVVLPEILAVIREQNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L+L+++  D   +  D ++RL + I   + + R+L  +     A+P Y++    P
Sbjct: 120 QLHIDLVLNDEITDPVTEGVDISLRLGQ-IGDGNFVARRLGYVRRVLVASPLYIEKHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               ++  H  I    L           +   RP   P    +  + +  + +  + G+G
Sbjct: 179 DEPTDIVGHPFIRVTGLFNDGQLRLMSPSKSVRPT--PINVVVSTSHWRPVYELLLNGAG 236

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           I +L +++     ++  LVR++ D   P F ++   P       K +   
Sbjct: 237 IGVLQEHVCIDALESGRLVRLLPDYTVPGFDLHALLPVTRPVPSKTQVVM 286


>gi|167836323|ref|ZP_02463206.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 303

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 122/293 (41%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  +    + E+        G L ++     G+  +      F+   PD
Sbjct: 61  DGAAFLERCRGLLTEWAQAENEVVAGRRAVGGHLIVSAPAAFGRKHVAPLAPAFIADKPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 LQMSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L +HN + F     +  ++  W    +  +   R+S  L  N    + ++   G G
Sbjct: 180 TLDDLAEHNCLAFNL---QGGQNRGWYFRRNGKLVTMRVSGTLDCNDGELLHRWVSEGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + +        L  ++++   P + +   YP+      +++ F +++
Sbjct: 237 LGWRSTWEIAQQLARGELATVLDEYALPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|167589473|ref|ZP_02381861.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 311

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 120/292 (41%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF R+ R + LTE G 
Sbjct: 11  LNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGQALFERYNRRVELTEAGR 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++       Q+      G LR++         L   L  F + +P I++
Sbjct: 71  VYLAEVGASFDRI--ALATAQQLQRGRHGVLRVSAPATFSLRWLVPRLSSFQVAHPHIEV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ ID   D  D  IR   P      +  + ++       AP  L   R      
Sbjct: 129 RLSTSNEPIDKLRDVVDVIIR-GGPQTIEGYVAEEFLSEVRLPVCAPRLLDG-RPLRQPA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WLA    P   PR S L +  +   +Q  + G G+A+ 
Sbjct: 187 DLAHFTLLHSATYPGMWPE---WLAAAGHPHLAPRHS-LTLEHFYLTLQGALDGLGVAMG 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V D+     LV+  +  + P +  +     A    G ++AF +++ L 
Sbjct: 243 PIALVADDIAEGRLVQPFDAPVLPPWRYFIYVAAARAEDGAVRAFMDWLKLA 294


>gi|218891158|ref|YP_002440024.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254241108|ref|ZP_04934430.1| hypothetical protein PA2G_01795 [Pseudomonas aeruginosa 2192]
 gi|126194486|gb|EAZ58549.1| hypothetical protein PA2G_01795 [Pseudomonas aeruginosa 2192]
 gi|218771383|emb|CAW27150.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 309

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 122/292 (41%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +
Sbjct: 10  DEVATLLALAEHGSFAAAGRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++
Sbjct: 70  LASRFRQAVDLLDEAEHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                + +DI  +  D AIR+ + +  S L+ R+L        AAP YL+    P    +
Sbjct: 130 TDYSERFVDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLERHGVPRIPAD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F  L          L   D          +  N   +++     G GI    
Sbjct: 189 LAAHNCLGFSGLHSYPEWK---LTRQDEQQPVRVRGSMVSNDNEALLCAARQGLGIFAAG 245

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++++  +     LVR++ +        VY   P A   T    AFR ++  +
Sbjct: 246 EWLMSRDLEAGRLVRVLPEWQLDADAGVYLVRPSARYATAAASAFRQWVEAR 297


>gi|295700487|ref|YP_003608380.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439700|gb|ADG18869.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 300

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 140/303 (46%), Gaps = 9/303 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D+L  F  V  +GS T AA QL+L+ S+ SR +  LE ++G  L  R  R L LT
Sbjct: 1   MKSTFDELEAFVSVVDTGSITAAANQLNLTISATSRTLGRLEDKLGTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    R    +   LE  + ++     +PSG+LR+        +++  N+  +   +P
Sbjct: 61  EEGQAFLRDARAIISLLENAEEQMAIRRERPSGRLRVDAATPFMLHVIVPNVPGYRARFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R +    M   A+P YL    +P
Sbjct: 121 QVELELNSNEGIIDLLEHRTDVAIRIGQ-LKDSTLHSRLVGRSRMRILASPAYLDAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L KH+L+ F    P+ +  +  L   + P        +  +S  ++ Q  + G+G
Sbjct: 180 RQAEDLRKHSLLGFTK--PEGLNVWPILGPDNEPYRI--SPAVHSSSGETLRQLALAGAG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L D++   +     LV+I+          +   Y      + ++ +F +++    R 
Sbjct: 236 IVCLSDFMTARDRREGTLVQILLRQTLDLRQPINAVYYRNTATSSRIGSFVDYLVESVRG 295

Query: 297 WKF 299
            +F
Sbjct: 296 SEF 298


>gi|224824501|ref|ZP_03697608.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602994|gb|EEG09170.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 305

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 127/299 (42%), Gaps = 17/299 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  VA   SF  AA  L  S S+++R I  LE EVG  L  R  + ++LT  G   
Sbjct: 8   EISVFCTVAEKRSFVAAARLLGRSPSAVTRAIQALEYEVGSTLLQRSQKLVSLTAAGESY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    ++       Q EL        G +R A   +L   +L G + EF   +PD++I +
Sbjct: 68  YTYARQMLDLQVEAQEELAGLGAAAQGWIRCAAPENLAIGVLPGVIAEFATQHPDVRIDV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D   +  D AIR   P Q S LI   L     H +A+P Y++    P+S  EL
Sbjct: 128 RFSDELLDPIREKLDFAIRGAFP-QDSELIGFPLWDYRRHLFASPDYIRRRGLPVSPDEL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H LI      P+ ++D+ +  +  R          + NS +++      G GIA L  
Sbjct: 187 VEHELIVH--TAPRILKDW-YFVSEGRQFRSKVEPRYRFNSGVAVYLAARHGVGIARLAS 243

Query: 247 YIVKD---NPNLVRIMEDVITPS-----FTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           ++         LV++  D    S       ++  Y  + +   +++ F        R W
Sbjct: 244 WLAAPAVKEGALVKVCPDYRVTSSRGQDPQMHAVYATSGQ-PRRVRLF----LESLRAW 297


>gi|222147639|ref|YP_002548596.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221734627|gb|ACM35590.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 293

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 138/292 (47%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  +AR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAIARTGQILAASKRLGLNHATLSRRLTALEDALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +  K +G +RI      G   L   L   +  +P++
Sbjct: 61  GEVFLASAERMETEMLEAQARLGRTDAKVAGTVRIGAPDGFGVFFLASRLGGLIERHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD A+ L +P Q   L+   L    +  YA+  Y++    P +
Sbjct: 121 KIQLVPVPRSFSLSQREADIAVTLERPDQ-GRLVSAHLTDYSLALYASRQYIERHGLPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L  H+ I + + +      F         I     +  +++S +   +  + G+GI 
Sbjct: 180 VEALKDHHRIGYVEDL-----IFTPSLNFTGEIMRNWNASFEISSAIGQTEAVLAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +L  YI + + +LVRI+ D+       +  Y E+L++  +++   +++  + 
Sbjct: 235 ILHSYIARQHRDLVRILPDITL-HRAYWTTYHESLRDLARIRTVVDYLRERV 285


>gi|209518362|ref|ZP_03267186.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501181|gb|EEA01213.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 295

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 9/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR +   AR+GSF+ AA +L++  S ++++I+ LE  +G  LF R  R +T T  G+   
Sbjct: 7   LRAYVATARNGSFSAAARELNVVPSVVTKRINELEATIGASLFERTTRAVTPTSLGASRV 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +++  KL+              G LR+     L    L+     F  ++P + +++ 
Sbjct: 67  EQATQLLRKLDELISGPSARPEDVEGHLRVKVPTALATTRLRPAFARFQSMFPKVNLEIA 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ I    D  D AI +   +    +++  L  IH+   A+P Y+     P   +EL 
Sbjct: 127 LLDRQISPVEDGYDLAIGVVL-LHPGGVVEEVLCPIHLLVCASPDYIARNGVPAHPRELP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            ++ +TF    P   E           +          N +  ++   + G+G+ LLPDY
Sbjct: 186 DYDCMTF---FPAHAEWR--FEKNGASVRVALRPRFTSNDWFLLLTAALQGNGLTLLPDY 240

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  D      LV ++ D   P   +    PE       L++  N +  +  D
Sbjct: 241 VAGDALKTGKLVHVLPDWTVPPGEIRAVIPEYRAADVALRSLLNILKGELAD 292


>gi|85711235|ref|ZP_01042295.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
 gi|85695148|gb|EAQ33086.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
          Length = 285

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 136/296 (45%), Gaps = 23/296 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              ++ F       S + AA +LH++ S++S+Q+  LE + G+ LF+R+ R +TLTE G 
Sbjct: 6   IRSMKAFTRTVELKSMSAAASELHMTVSAVSQQLRKLEKDNGLALFHRNTRVMTLTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++       Q  +++ +  P+G ++I   +  G  LL   L++    +PD+Q 
Sbjct: 66  VFYQSCLDILSIAAKNQERMEQLTQTPAGVMKIMAPVGFGGGLLSEPLRQLTEQFPDMQF 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L + ++ ID+     D AIR+  P+  SSL    L+  H+    A  +    R   S++
Sbjct: 126 KLSMTDEPIDLVTAGVDLAIRIG-PLPDSSLYSHHLINWHLVPCVASTHELAKRRVSSLE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     I             ++  T D P+  PRI   QV++  + +Q    G G ALL
Sbjct: 185 DLQAETFIA------------HFSNTYDLPLPAPRI---QVDNMQTTVQLTCDGVGFALL 229

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           P+  VK    N  LVR++ D     + VY   P       K +   N I     DW
Sbjct: 230 PEPEVKPQLQNGELVRLLPDWEGVEYGVYAVLPVKESIPAKTRLVMNVI----EDW 281


>gi|172065314|ref|YP_001816026.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997556|gb|ACB68473.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 300

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 123/301 (40%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F  AA     S S +S  +  LE ++G++L +R  R ++ T
Sbjct: 1   MQVDLGDLNAFVAVARAKGFREAARLADASASGLSEAVRRLEAQLGVRLLHRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    +    ++E     +     KP G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGARLLARLTPALSEVEAALDVVNTFREKPVGTLKLNVPMSAARLVLPSIVPRFLDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           +I+++++ D   +DI     D  IR  + ++   +I   +      +   AAP YL    
Sbjct: 121 EIRLEVVADESFVDILAAGCDAGIRYDERLEQD-MIAVPIGPRSQRLATAAAPAYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCV 236
            P   ++L  H  +  G      M  + +    +    EP   +      +   ++    
Sbjct: 180 RPAHPRDLLDHACLR-GRFASGAMPAWEYERDGEVVRVEPSGPLVVQIGGAVDLVVDAAC 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI  L +  ++    +  L  +++    P    Y  YP        L+AF +FI  +
Sbjct: 239 AGLGIVHLYEDWLRPYFASGALEPVLDGWWRPFSGPYLYYPGRRFVPAPLRAFVDFIKAE 298

Query: 294 A 294
           A
Sbjct: 299 A 299


>gi|170722261|ref|YP_001749949.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169760264|gb|ACA73580.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 305

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 119/292 (40%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +      F  + R  SF  A  ++ +S S++S  I GLET +G++L  R  R +TLT  G
Sbjct: 7   NLADFVYFLAIVRHQSFNRAGLEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +LH + S    ++      L     +P+G++R+ T  D    LL   L  F   YPDI+
Sbjct: 67  EELHTLISGPIDEIGQAMEVLNRYRDEPTGRIRLNTLSDGADLLLGPVLPLFNDRYPDIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L + N+ +D+     D  IR    +    + QR    I        +YL+   EP   
Sbjct: 127 IDLTVTNRLVDVIGGGHDAGIRYGGTVPEDMIAQRLSPDIRWVVAGTANYLQRFGEPKHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L KH  +       +  +           +         ++     +     G+G+  
Sbjct: 187 QDLLKHRCLRIRLGNDRMYDWE--FEKNGEQLAIAVPGATTIDETRIGVSLIRHGAGLMY 244

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            P+ ++     + +LVR+++D  + +   +  Y    +    L+   + I  
Sbjct: 245 APEPVIAPLVASGDLVRVLDDWSSVAPGFHMYYSSHRQLPVGLRLLIDLIRE 296


>gi|300689815|ref|YP_003750810.1| transcriptional regulator, lysR family [Ralstonia solanacearum
           PSI07]
 gi|299076875|emb|CBJ49488.1| transcriptional regulator, LysR family [Ralstonia solanacearum
           PSI07]
          Length = 298

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 121/288 (42%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q +  R +  LE  +G  LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFVRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                   G +RI  +  +   +L   L +    YPD+ I
Sbjct: 68  ALRPYAESLESTSAALLRAASSQREGVRGTVRITASEVVTVEVLPAILADLHAAYPDLII 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N+  ++    AD A+R+++P Q   LI R L  I +  +A   YLK C  P ++ 
Sbjct: 128 ELVPSNRLENLLRRDADIAVRMQRPSQ-GVLIARHLGGIELGVHAHRRYLKRCGTPATLD 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI +          F        P        L+ +S L+ +     G GI + 
Sbjct: 187 DLAGHALIGYDRETA-----FIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGIC 241

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + + +P+LVR+  D + P    +    E L+++ + +   + +  
Sbjct: 242 QVGLARHDPDLVRLFADDVAPVLDTWLAMHEDLRDSPRCRVVFDALAA 289


>gi|218670462|ref|ZP_03520133.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 269

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 123/264 (46%), Gaps = 7/264 (2%)

Query: 32  SSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKP 91
           S+  + +  LE  +G +L  R  R L+LT++G   ++   EV   ++  +  +   S  P
Sbjct: 1   SAAGKAVIRLEDRLGTRLLNRTTRRLSLTDEGRVFYQHGLEVLASVDEAEASVAGQSAAP 60

Query: 92  SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQ 151
            G LR       G+ ++   ++++LL +PDIQ+++   ++  DI  +  D AIR+     
Sbjct: 61  RGVLRFTVPDAFGRLVVLPIVEKYLLAWPDIQVEVNFTDRKTDILEEGFDLAIRIGTTPS 120

Query: 152 SSS--LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLA 209
           +S   L+ R +        A+P YL +  EP  I +L  H+ + F        + + +  
Sbjct: 121 ASDTRLVSRVIAADRPRLCASPSYLADRGEPRDIDDLAAHDCLVFSS--RDQRQGWRFRG 178

Query: 210 TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPS 266
                +     S L+++S  +I    V G GIALLPD++V  +     L +++ ++ T  
Sbjct: 179 EGGAWVKAQGRSRLRLDSDEAIRDAAVAGLGIALLPDFLVASDLAAGRLRQVLPELETDD 238

Query: 267 FTVYFCYPEALKNTGKLKAFRNFI 290
             +   YP+      +++ F + +
Sbjct: 239 AKIVTLYPDKRLLEPRVRRFIDLM 262


>gi|323530214|ref|YP_004232366.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323387216|gb|ADX59306.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 301

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 129/296 (43%), Gaps = 11/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L VF  VAR GS T AA ++ ++ S++SRQ++ LE  +G+ LF R  RG+ LT+ G+
Sbjct: 8   LNPLHVFEAVARLGSLTSAAAEMCVTHSAVSRQLATLENYLGVSLFDRGPRGVKLTKVGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++     +  + +    +          LR++         L   L  F   +P+I +
Sbjct: 68  TYYKQIGPAFASIVSATETIVGRMEGEP--LRLSVYTTFAAKWLMHRLHRFEQAHPNIPV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L      I+ S    D AI+         +   +L    +    +P  LKN     SI 
Sbjct: 126 ELSTTVAKINFSEVQVDAAIQFGDG-NWPGINCERLFDDVIEPVCSPQVLKNGPPLESID 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGSGIA 242
           +L  H L+       +  + F+WL  V R   E  +S  +    + L   Q  + G G+ 
Sbjct: 185 DLANHRLL---QSRYRRNDWFDWLRAVGRSDLEGLVSRQRGGFQNSLLAYQAAIEGMGVV 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +    ++ ++     LVR  +  +T     Y   P+  +++ K++AFR ++  + +
Sbjct: 242 IGQTRLLANDIAAGVLVRPFDRPVTRELAYYLLVPDNRRHSRKVEAFRVWLRSEIQ 297


>gi|206580207|ref|YP_002237685.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206569265|gb|ACI11041.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 296

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 137/289 (47%), Gaps = 12/289 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  +AR GSF+  A +  ++ SSI R+I  LE  +   LF R  RG+ LTE G  
Sbjct: 8   ENLSLFVEIARCGSFSAVARRHGVNPSSIMRKIDMLEAVMKAPLFTRSTRGIHLTEIGDA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      V   L   + E+   + + +G LRI+      +  +   L EF   YPD+ + 
Sbjct: 68  LFTRAVGVLEALNDMRDEIVSLNEEVTGTLRISCLPTFAKLHIFPWLPEFKSHYPDVDLV 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +    S++  D A+R+ K +++SSL   K+      A A+P Y++    P    E
Sbjct: 128 LDLTEQLEIPSIERLDAAVRIGK-LKNSSLYATKIAHQTWIACASPRYIEQYGFPSGPTE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+++             +W   +D   GE R+  ++ N + ++++  + G GI  LP
Sbjct: 187 LAGHHIL----DKYHDPHSISWSRIIDTQGGEYRLY-MRCNDFEALLKAAISGLGIVFLP 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEAL-KNTGKLKAFRNFI 290
           +++V  +     LV I +D       ++F    AL + T KL AF  F+
Sbjct: 242 NWVVGQDIKAGRLVNIFDDPQQKVDDIHFL--RALPRMTPKLAAFLQFL 288


>gi|329847740|ref|ZP_08262768.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
 gi|328842803|gb|EGF92372.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
          Length = 299

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 132/291 (45%), Gaps = 8/291 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +   VA+SGS + AA +L +  +S+SR++S LE  +G ++F R +R L LT+
Sbjct: 1   MDRLASMAIVLEVAQSGSLSAAARKLRMPLASLSRKVSELEAHLGAQIFTRTSRKLALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   +   +  +      PSG+L +   +  G+  +      FL  +PD
Sbjct: 61  SGEGYLAAARRILDDISEAERTIAGEFRTPSGELVVTAPVVFGRMHVLPVATAFLKSHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LIL ++ ++++ ++ D A+R+  P+  S +  R + +      A+P YL     P 
Sbjct: 121 IDLRLILTDQPLNLAEEHVDVALRIG-PLPDSQMRARLVGSTRRIICASPAYLAVRGPPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H+ IT   L       F       R +  P    ++VNS  + +   + G G+
Sbjct: 180 TPADLATHDGITLDSLASAAGWQFR---DGKRDVTVPVRPRVKVNSPPAAIDAAIAGLGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             +  Y V +   + +L  ++E      + ++  +        K++AF  +
Sbjct: 237 TRVLSYQVAEACRSGDLQIVLEQFEPEPWPIHLVHVLQGPMALKVRAFLAW 287


>gi|224824875|ref|ZP_03697981.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602546|gb|EEG08723.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 302

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 12/299 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + L+ F   AR  SFT AAE+L L+QS++ +QI+ LE  +GI LF R  R ++L+E G
Sbjct: 7   SIEALQAFEAAARHQSFTRAAEELALTQSAVCKQIATLEEMLGIALFNRIKRRVSLSEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R   E   +LE + + +        G + +A         L   L  F   +P+I 
Sbjct: 67  QVYAREVREHLDRLERSTLSIMAHQGSG-GVIELAAIPTFATRWLIPRLPGFYAEHPNIT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +   +     +    D +I     +   +     L    M    +P  L     P   
Sbjct: 126 INITTRSDTFIFADTVFDASIHFGTGVWPGA-HADHLFGEEMIPVCSPQLLARHPCPQ-P 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           Q+L K  L+          + F      D   +  PR           +++      G+A
Sbjct: 184 QDLVKLKLLHLSARHDAWHKWFAAAGASDLNAMVGPRYELFS-----MLVEAARAQMGVA 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           L+P ++V++   + +LV   +  +      +  YPE+ +    L+AF +++  +A  ++
Sbjct: 239 LVPRFLVQEEIRSGSLVTPFDIPMQSEMGYFLVYPESKQEAKVLQAFVSWLLEQAEQYR 297


>gi|264676690|ref|YP_003276596.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262207202|gb|ACY31300.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 326

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 131/298 (43%), Gaps = 13/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VAR  +F  AA++L L+QS++SRQI  LE EVGI LF RH+R + LT  G++L
Sbjct: 21  HLRAFLAVARHLNFRAAADELALTQSAVSRQIQSLEDEVGIPLFLRHSRAVELTGAGAQL 80

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     ++ T  +++++  +    + I T        L   L+ F   YPDI I++
Sbjct: 81  LHAVQPALESIDATVRQIRQTVGRK--SVAITTWASFAAMWLIPRLEAFQRAYPDIDIRI 138

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+     D AIR    +  +S   + L    +   A+P  L++     S  + 
Sbjct: 139 DTGDAVVDLETTDVDLAIRYSAGVSDAS--AKALFGEELVLVASPALLRSGPAVHSPADA 196

Query: 187 DKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++ LI  GD+      + +    W A       +P    L  N    I+Q  + G G+A
Sbjct: 197 ARYTLIETGDVHRMPQLEWLSWQRWFAANGCDQLQPP-RWLYFNYAHQIVQAALAGQGLA 255

Query: 243 LLPDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +    +V D      L+ ++ +       + +           +++AF  ++  +AR 
Sbjct: 256 IARLPLVADALAAGTLIEVLPEHRLASPLSYWLLQGPRSSERPEVQAFCQWLMEQARQ 313


>gi|197337625|ref|YP_002158576.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314877|gb|ACH64326.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 302

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 145/299 (48%), Gaps = 16/299 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ DW    +F  VA+  SF+ AA +L +  +++SR+I  LE+++G +LF R+ R + LT
Sbjct: 2   MNEDW---LLFAKVAQYQSFSEAARRLSVPTTTVSRRIQNLESQLGERLFIRNTRSVVLT 58

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L   T  +   L      ++  S + SGKL+++T+  L Q L+   +  F L YP
Sbjct: 59  ELGQRLLPKTKLLEMALGELHSTIESHSQEISGKLKLSTSDTLSQFLIPNLISTFSLQYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I   +   N++  +  +  D + R+   ++ S+LI  KL  I     AAP +++N    
Sbjct: 119 LINFDISSSNRNEQLLNENIDFSFRIGL-LEDSNLIAYKLCEIEYVLVAAPSFIENSTID 177

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           +++  L +H  I     G  +P C+   + +  ++R          +V++          
Sbjct: 178 ITLDTLIQHPCIIINIDGKEVPWCVSSDDHVLELNRHKK------YRVDNLFIAKSLAEA 231

Query: 238 GSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GSGIALLP ++ K+      LV I+++V      +   Y +    + K K F  +I  +
Sbjct: 232 GSGIALLPKFVAKEAIRTNTLVTILDNVNIQKNPLSLIYFDKHFLSNKSKCFLQYIKEQ 290


>gi|78062818|ref|YP_372726.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970703|gb|ABB12082.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 296

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 127/290 (43%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  V ++GS + AA +  +   ++SR++  LE ++ ++L  R  RG  LT+ 
Sbjct: 1   MDLNAVEMFVTVVQAGSLSAAALRTGVPLPTLSRRVRELERQLSVQLLERSVRGTKLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+   S     L   +  +  +  +  G LR++             L  F + +P I
Sbjct: 61  GVRLYEHASRGIEALIEAKEAVVSAQHQLKGFLRLSLPPTFDIWW--DLLAAFQVRFPGI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +    + +D+ +D  D A+R+   I+  S++ RK++       A+P  L+    P +
Sbjct: 119 RLFVYTTERRVDLIVDGIDVALRVGA-IEHESMVARKILQYRHRLVASPALLEQYGRPAT 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L      T+G L       +N   T   P           N Y  + +  + G  + 
Sbjct: 178 PEDLQLLPCATWG-LGAYAQPVWNLGETPFHP-----RPLFATNDYAHLHRRALAGDVVT 231

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LP ++V ++     LV ++++   P   +   YP     +  ++A+ +F
Sbjct: 232 ELPPFLVMEDLRTQRLVSLLDEHPLPEQELNLLYPSHRHPSSVVRAYLDF 281


>gi|296115306|ref|ZP_06833945.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978129|gb|EFG84868.1| transcriptional regulator, LysR family protein [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 300

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 125/289 (43%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L     VAR+ SFT AA +L +SQS++S  I  LE  + ++L  R  R +T T  G
Sbjct: 5   NLNDLTALVAVARAKSFTKAAAKLGVSQSALSHTIRLLEERLDLRLLTRTTRSVTPTTAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +    ++E     L E   + SG LRI    D    ++   +KEF+  YP I 
Sbjct: 65  QQLISGIAPHLDQIENQLTSLGELRNQESGNLRITMPDDALAYVVLPKIKEFVQKYPKIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D K IDI  +  D AIRL + I            I      +P Y     +P   
Sbjct: 125 VEFVADLKLIDIFSEDFDGAIRLGENITKEMTSVPITPDIRFVVAGSPEYFSKNPKPKHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L  HN +T    +P     + W      + I       L  NS   I   C+ G G+A
Sbjct: 185 KDLLNHNCLTL--RLPTHGRIYAWEFEKKGKDITVKVEGSLIFNSIFPIRDACLEGLGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P+ + +       L++++ED        + C+P   +N   L  F +
Sbjct: 243 HMPEMVARKYIQEGRLLQVLEDWCPYWSGYHLCFPRHHENVAPLSLFID 291


>gi|296158497|ref|ZP_06841328.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295891441|gb|EFG71228.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 302

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 134/297 (45%), Gaps = 9/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA +L +S++++S  ++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDVNSLTLLVEILDAGNLSEAARRLKMSRANVSYHLNQLERSIGLQLVRRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + + L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLQLYEHGRTIQNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMSDWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P + +    P  
Sbjct: 121 VLDVMFENRVEDLMRDEVDIAVRVMSE-PPQNLVARDMGPVRYVACASPAFAQTHGMPRQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    LIT   +  +              + EP    L   ++L + Q  + G G+ 
Sbjct: 180 LDDLRTAPLITSAVVGRQLRVAAYLRDERHEVLLEP---TLISENFLFLRQAVLAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+PDY+V+D+    + V  +++     F   +Y  Y     +T     F +FI  +A
Sbjct: 237 LVPDYVVQDDLRRGDAVTALDEWRLSIFGTHMYMLYMPNRHHTRAAATFIDFILQQA 293


>gi|307725924|ref|YP_003909137.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307586449|gb|ADN59846.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 303

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 120/287 (41%), Gaps = 12/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA +G+F+  A+ +  S  +ISR +  LE  +  +L  R  R ++LTE G + +
Sbjct: 7   MRVFSRVAETGNFSAVAKHMDCSAGNISRAVVSLEEHLHTRLLQRTTRSVSLTECGERYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R   ++  +++    E   + + P G LR+    D+G   L   + E+   +P + I L 
Sbjct: 67  RRCKKILAEIDEADAEASNAHMLPRGTLRVHAVPDIGLKQLTSTIVEYRHAFPAVSIDLK 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  ++  D  D +I     +  S  + R +        AAP YL       S+ +L 
Sbjct: 127 LLPRMANLIEDEVDVSIISAASLPDSRNVSRLIGRCQRILVAAPSYLARHPV-HSVDDLP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H L+          E     A         +     VN+  ++    + G+G+  +P Y
Sbjct: 186 NHTLMQSRSSFDPPTEWPAGDAA--------QAGHFVVNNMQALRLALLEGAGVGAVPAY 237

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            V+D      LV++       +  V+  YP       K+K F + + 
Sbjct: 238 SVQDELKEGKLVQLFAHYPLEATNVFVVYPSRQFVDAKIKTFVDHLI 284


>gi|315499074|ref|YP_004087878.1| transcriptional regulator, lysr family [Asticcacaulis excentricus
           CB 48]
 gi|315417086|gb|ADU13727.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 302

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 110/292 (37%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D      F  +AR  +F  A  +  +S S++S  + GLE  +G++L  R  R +TLT  G
Sbjct: 7   DLADFSHFLAIARHRNFRRAGLEQGVSASALSHALKGLEARLGVRLLNRTNRSVTLTAAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+   +  + ++      L      P+G++R+         LL   L  F+ LYPD++
Sbjct: 67  EELYNALNGPFAEISGAVDSLNRFRAAPAGRIRLNVLEHAASLLLAPVLPVFVDLYPDVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + + N  +D+  +  D  IR    +    + +R    I      +P YL     P   
Sbjct: 127 VDVSVSNHMLDVIGEGFDAGIRYGGTVPEDMIARRLSADIGWRIVGSPEYLNTYGVPQHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H  +                      I       + ++     +   + G+ +A 
Sbjct: 187 QDLKAHRCLRVRLGDDTLYRWE--FEQAGEAISLDVPGAVTIDDTQFAIALALGGTALAY 244

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LP+  V+   ++  L  ++ D        +  Y         L+   + I  
Sbjct: 245 LPEPCVRPFIEDGRLKTVLHDWSPTGEGFHIYYSGRRHLPNGLRLLIDLIRE 296


>gi|206562218|ref|YP_002232981.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038258|emb|CAR54213.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 293

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 116/296 (39%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                L +F  +   G    A  ++ LS +++S +++ LE   G  L  R  R ++LT++
Sbjct: 1   MLLGNLALFLRIVEKGGLAAAGREVGLSPATVSERLTALERHYGAALLTRTTRAISLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  + +  +  ++      SG +R++   DLG+  +   +  FL  +P +
Sbjct: 61  GRTLVDGARRLLAEADELESRVRLGVRTLSGPVRLSAPADLGRERVVPVVDAFLADHPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+     D AIR R  +  SSL  R L        A+P YL     P  
Sbjct: 121 TVDLHLGDGYVDLVGQGLDFAIR-RGTLADSSLRSRSLGRARRVVCASPAYLAAHGTPAH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H+ I          E   W  ++D  +           N    +  +CV G GI
Sbjct: 180 PDELASHDCIVMRFGQELYAE---WPFSIDGVLKRVVVRGRRVANDGALVRAWCVAGHGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL     V+ +     LV I+ D       +   YP       +++A  + +    
Sbjct: 237 ALKSLVDVERDLASGALVEILRDFSPDKVDLQIVYPGRAAQPRRVRALIDRLAQAL 292


>gi|167619752|ref|ZP_02388383.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 303

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 120/293 (40%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +  +    + E+        G L ++     G+  +      F+   PD
Sbjct: 61  DGAAFIERCRGLLTEWAQAENEVVAGRRAVGGHLIVSAPAAFGRKHVAPLAPAFIADKPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 LQMSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           ++ +L  HN + F     +  ++  W       +   R+S  L  N    + ++   G G
Sbjct: 180 TLDDLAGHNCLAFNL---QGGQNRGWYFRRSGKLVTMRVSGTLDCNDGELLHRWVSEGLG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + +        L  ++++   P + +   YP+      +++ F +++
Sbjct: 237 LGWRSTWEIAQQLARGELETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|254243143|ref|ZP_04936465.1| hypothetical protein PA2G_03942 [Pseudomonas aeruginosa 2192]
 gi|126196521|gb|EAZ60584.1| hypothetical protein PA2G_03942 [Pseudomonas aeruginosa 2192]
          Length = 304

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 117/298 (39%), Gaps = 6/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D LRVF   AR  SFT AAE+L  +Q ++S+QI  LE E+   LF R  RG+ LT
Sbjct: 6   MPLSLDLLRVFESAARQLSFTAAAEELGTTQPAVSQQIKRLEKELATPLFQRLHRGIVLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L R  +     ++     L          L++AT        L   L  F   +P
Sbjct: 66  DAGQLLLRHVAAGLETIDAGIAALGARQRHE--VLQVATDYAFAAYWLMPRLPRFHQAHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+   + +       D AI              +L    +    +P  ++  + P
Sbjct: 124 HLDVSLVTSERGLAGQRGDIDVAILFGDGRSKHG-EAHRLFREEVFPVCSPRLVEGLQLP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+   L +  ++           D+  L        +P  + L  ++Y  ++Q  + G G
Sbjct: 183 LAKAHLARLPMLHLKPAQHARWFDWPALFEALAIDRQPIPAVLSFDNYTLLIQAAIAGQG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A+   ++V    +   L R + +     +  Y   PE  +    +  F +++  + +
Sbjct: 243 VAIGWRHLVDGLLEQGLLCRPIGESCLSRYGYYAVLPERKRRQRLVDGFVDWLQAELQ 300


>gi|238793288|ref|ZP_04636915.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238727456|gb|EEQ18983.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 319

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 131/288 (45%), Gaps = 8/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F  +  +GS + AA +L  SQ +ISR++  LE  +G+KL  R    + LT+ G 
Sbjct: 12  IELMQTFIRIVEAGSLSAAAARLGTSQPTISRRLQTLERLLGLKLLQRTTHVMKLTDDGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +       + +L+ ++ +P G LR+      GQ+ L   LK++L  YP + +
Sbjct: 72  RCYSHAKALVENWNRMEDDLRGATDEPRGILRVLVPHAFGQDQLIKPLKDYLGRYPKMSV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L+++  D  ++  DCAI++   +   S++   L  +     AAP  L +   PL   
Sbjct: 132 EWMLNDRRPDFIVEGIDCAIQVGA-VTDPSVVAILLAEVPRIVVAAPELLNDKPLPLHPD 190

Query: 185 ELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L     +        + + +      + R   +P+   L  +S  ++    + G G+ +
Sbjct: 191 QLQDLRWLALSSFYRNEVVLNHQTSGDIHRFSIQPQ---LSTDSLYALRNAALAGVGVGI 247

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
              ++V ++     LV +  D       +Y  YP A     +L+AF +
Sbjct: 248 ASTWVVSEDLAQGRLVHLTPDWHGLPLPIYLVYPHASFYPARLRAFLD 295


>gi|330965852|gb|EGH66112.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 302

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  V  +G F  AA     S SS+S  I  +E  +G++L  R  R +T T
Sbjct: 1   MNTDIQDLLAFVAVVNAGGFREAARISGKSASSLSDAIRRMEARLGVRLLNRTTRSVTPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+KL   +      +E+    + +   +PSG LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGAKLMERSVPALAAVESALDVVNDFRDRPSGTLRLNVPVSAARLVLPSIITPFLQTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++ +   +D+     D  IR    ++   +I   +          A+P YL    
Sbjct: 121 DIRLEVVTEESFVDMLAAGCDAGIRYDDRLEQD-MIAVPIGPRFQRFATAASPAYLAARG 179

Query: 179 EPLSIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            P   ++L  H  +   F        E      TV      P I  +   ++   +Q  +
Sbjct: 180 RPEPPRDLLNHACLRGKFPSGNLPPWEYERKGETVRVDPSGPLIVRI-GGAFDLTVQAAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+  L +  ++   D+  L  I+E         Y  Y         L+AF +FI
Sbjct: 239 DGLGVVHLFEDWLRPHLDSGALEPILEPWWQRFTGPYLYYHGRRYLPSPLRAFIDFI 295


>gi|110636066|ref|YP_676274.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110287050|gb|ABG65109.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 285

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 122/272 (44%), Gaps = 14/272 (5%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ +S+SR ++ LE  +G +L  R +R LTLTE G       + V  +L   +  + E  
Sbjct: 1   MAPASVSRYVNALEDRLGTRLLNRTSRSLTLTEAGEAYLATAASVIEQLAAAETRVAELG 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             PSG LR+ + I +G   +   + +FL  YPDI + L+L N++I+++    D  IRL K
Sbjct: 61  KTPSGTLRVHSRIFVGSQFIVPYVPQFLKRYPDINLVLMLSNEEINLAESNVDLDIRLGK 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            +  S LI  KL        A+P YL       S  +L +H+ + +   I   +  F   
Sbjct: 121 -LNDSDLIVSKLAETERCVVASPKYLDAAPTITSPADLSQHSCLVYTKHIGSSVWSF--- 176

Query: 209 ATVDRPIGEPRISCLQVNSY-LSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVIT 264
              D    + R+S      Y  S+    V G G+ALLP++ V ++     LVR+  D   
Sbjct: 177 INKDGLRSDVRVSGRYTTDYGPSLKTLAVAGFGLALLPEWSVFEDVAAGRLVRLFADHRV 236

Query: 265 P------SFTVYFCYPEALKNTGKLKAFRNFI 290
                     VY  +        K + F + +
Sbjct: 237 SHIGYDFDNGVYCVWQRDRHQALKTRLFIDHL 268


>gi|332186033|ref|ZP_08387779.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
 gi|332013848|gb|EGI55907.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
          Length = 296

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            WD  R F  V   GS + AA  L ++Q SI+R I  LE E+G KLF R  RGL+ T++ 
Sbjct: 6   SWDVYRSFAAVLCEGSLSGAARALGMTQPSIARHIDALEQELGGKLFVRSQRGLSPTDRA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      + +     +          SG +RI+ +  +G   L   L +    +P + 
Sbjct: 66  HALRPHAEALVNAARALRRTGSGEPDHVSGVVRISASQAVGVMHLPPILTDLRRAHPALT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L ++  D+    AD A+R+ +P Q + L+ R++  + +  +A   YL     P ++
Sbjct: 126 IELALSDEPDDLLQRRADIAVRMFEPAQQA-LVARQVGAVRLGFHAHRDYLDRRGIPGTL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+LI F             L  +DR +       L+V+S  +       G GI +
Sbjct: 185 AELRGHDLIGFDTQTNFIRAAMRHLPGIDRSMF-----ALRVDSDAAQFAAIRAGFGIGI 239

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               I + +P LVRI+ D +     ++    E L+   + +   + +    
Sbjct: 240 CQTAIARRDPALVRILPDALDLPLPLWIVMHEDLRRISRCRTVFDALAAAL 290


>gi|324006162|gb|EGB75381.1| LysR substrate binding domain protein [Escherichia coli MS 57-2]
          Length = 299

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 4/287 (1%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F VVA   SFT AA +L ++QS++S+ +  +E  +G++L  R  R +  TE G  L
Sbjct: 8   DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
             V   + H +++    L +   +PSG +RI T     + +L   ++ FL  + +I IQL
Sbjct: 68  LSVLGPMLHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHSEIDIQL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            +D    D+  +  D  +RL   +    +  R    I M    +P Y      P S+ +L
Sbjct: 128 TIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSAPTSVSQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I            +  L    R +       L +N+   I+   + G G+A LP 
Sbjct: 188 IDHQAINLYLPTSGTANRWR-LIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPY 246

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             V+       L+R+++         +  YP           F + +
Sbjct: 247 DQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293


>gi|260431621|ref|ZP_05785592.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415449|gb|EEX08708.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 294

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 6/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FDW+ +R F   A +GS + AA +L  +Q ++SRQI+ LE+++G+ LF R  R L +T 
Sbjct: 6   KFDWNHIRAFLATAETGSLSAAARRLDQTQPTLSRQIAALESDLGVMLFERVGRSLQITT 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L   T E+    +   +     +    G++RI  +  +   +L   L+E     P 
Sbjct: 66  AGIELLEHTREMGAAADRIALAASGQAQSIEGQVRITASDVMSAYILPDLLREIRAQAPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I +I  N   D+    AD AIR  +P Q   LI + +     H YAA  YL     P 
Sbjct: 126 LRIDVIAANDIRDLMRREADIAIRHVRPDQ-PDLIAKLVQEADGHFYAATAYLNRAGRPK 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L +H  I+FGD      +   +   +   + E     L   + +   ++   G GI
Sbjct: 185 SLSDLSRHAFISFGDTA----QMIAYFEPIGLHLTEENF-RLGSQNGIVAWEFARQGFGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A + + +    P + R++ D+    F ++      L  + +++   + +  
Sbjct: 240 APMSEPVGDATPGMERVLPDMEPLRFPIWLTTHRELHTSRRIRLVFDLLAE 290


>gi|294010570|ref|YP_003544030.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292673900|dbj|BAI95418.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 299

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 118/296 (39%), Gaps = 12/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     LR F  +    +F+  A +LH S ++I+R++  +E   G  LF+R  R L  T
Sbjct: 1   MSDLLIALRTFVRLCEKPNFSRVARELHASHTTIARRLDQVEAHFGAVLFHRTTRRLIAT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +  +L      +   LE  + +      +P G +RI  T  LG + +   L E    YP
Sbjct: 61  PEADRLLVHARAMLDALEGAERDFGPVRGEPGGLVRIGFTTALGLHYV-ERLGELTARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q    + +   D+  D  D A+R+  P+    L+   L  +     A P YL     P
Sbjct: 120 ALQFDCAMTDWQRDMVEDRLDLALRVG-PVGDDRLVVHPLGRLPRLLVAQPAYLAARGMP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S ++L  H  I +           +    V        +   + +S  ++ +  + G G
Sbjct: 179 ASAEDLSAHQCIAYAYGDVPARWTIDGRERV-------AVGAFRSDSSEAVHRAALSGLG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IALLP   V+D+     L  ++ D       +   +P       K +   +F+  K
Sbjct: 232 IALLPAVRVRDDIAAGRLAPVLPDSHIAPLDIAAVHPSHKSLAPKARVVLDFLKAK 287


>gi|107026639|ref|YP_624150.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692171|ref|YP_837704.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896013|gb|ABF79177.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650171|gb|ABK10811.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 297

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 134/293 (45%), Gaps = 7/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +WD  R F  +AR+G+   AA QL++ Q+++ R+I+ LE E+  +LF R      LT
Sbjct: 5   IRMNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPSLYVLT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L      +     T +  +     + +G +RIATT  LG+  +   +      + 
Sbjct: 65  TAGEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDTLGKRFVVPAIANLRRRHA 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I +  +   +  +++   AD AIR  +P +S  LI R+L  +    YA+  YL    EP
Sbjct: 125 GIDVVCVTSAQITNLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRRYLAERGEP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++    D H+L+ +   +   M    W A    P    R+   Q +S + +++  + G G
Sbjct: 184 VAGSAFDGHDLVMYQQPVVPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEAALAGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA LP +     P+LVR+M       F V+      L  T +++A    +  +
Sbjct: 239 IAELPCFRADTEPDLVRLMPQRCN-HFDVWLVAHADLYKTARVQAVIEAVVDE 290


>gi|258621517|ref|ZP_05716550.1| transcriptional regulator [Vibrio mimicus VM573]
 gi|258586135|gb|EEW10851.1| transcriptional regulator [Vibrio mimicus VM573]
          Length = 311

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 135/294 (45%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S   D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R ++ L LT
Sbjct: 10  LSMKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRSSKELVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L    +E++ ++E  Q +++++     G++ I+  +   ++ L     EF  LYP
Sbjct: 70  KEGEQLFHTYAELFAEIERKQDQVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFSELYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L + +     +    D A+R   P   S  + RKL        A+          
Sbjct: 130 NVTLRLQVGSGLDYFTQRDLDIALRFG-PQPESDWVARKLARNPSVLCAS-APFAASLSL 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              Q+L+++ L++    +P            D+ +     + L  +   +I+Q  + G G
Sbjct: 188 SHPQQLNQYPLLSLNHKLPWIFHS----KESDQKVQFIPSARLSSDELDTIVQATLQGMG 243

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           IA LP  ++    D+  LV ++ +       VY  +P+      + +A  +++ 
Sbjct: 244 IARLPRGLMAPLLDDGQLVELLPEWEIEGADVYLLHPQRRFLPERTQALIDYMI 297


>gi|326793680|ref|YP_004311500.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326544444|gb|ADZ89664.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 308

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 123/289 (42%), Gaps = 10/289 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V   GSFT+A ++L L  SSISR IS LET +  KL  R  R + +   G ++
Sbjct: 12  ELAVFVAVVEEGSFTNAGKKLGLPPSSISRTISKLETGLTTKLLERTTRRVAVNSIGREV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 + +  ++     Q      +G+LRIA      + +L   + EF+   P + +++
Sbjct: 72  FESAKNMLNSAKSAVDITQSRQNHLTGELRIAAPKAFTKLILASIVFEFMEANPTLTLKV 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  ID S    D   RL        L+ RK+  +     A+P YLK  + P   ++L
Sbjct: 132 TASDHIIDPSSGEVDLIYRLTNQPID-GLVARKVANVKQVICASPTYLKRKQIPSRPEDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN I+ G+     +  F+     ++   +        N      +  +   GI+  P+
Sbjct: 191 TQHNCISLGEFEGDHIWYFDQSGHTEKVKTQ---GNFSSNHSEIRKEAVLRHMGISAFPE 247

Query: 247 YIVKDNPN---LVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNF 289
           + VK+       + +++D          V+  Y ++     +++ F  F
Sbjct: 248 FAVKEELESEMFIPLLQDWHFSGTYQGEVFAQYSQSRYVPIQIRRFIEF 296


>gi|319788622|ref|YP_004148097.1| LysR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317467134|gb|ADV28866.1| transcriptional regulator, LysR family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 301

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 122/295 (41%), Gaps = 5/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + LR+F  VA S +F  AA++L +++S++S+ +  LE  +G+ L  R  R + LT
Sbjct: 1   MEPDLNLLRLFQAVAESHNFRAAADRLGVTRSAVSQAVRKLEDGLGVALVQRSTRSVRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +LHR  +     L     E       P G L++A T      L    +  F   +P
Sbjct: 61  EAGQRLHRQVAGPLSTLSAALDE-AGGDASPRGVLKLAVTSIAEPFLGGQLVASFAQAHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + + + +++ DI     D  +RL + I+   +           A AAP Y+     P
Sbjct: 120 GITLDVTVTDEEFDIVAAGFDAGVRLGEVIEQDMVAVPLGGPQRELAVAAPAYIAAHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL +H  I +          + ++    RP        +  N    ++   + G G
Sbjct: 180 AHPRELVRHRCIGWRRRPDVAPHRWEFVED-GRPFDVQVDPQVTTNDLSLMINAALAGGG 238

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I    +   +   +   LV +++D +      +  YP+      KL+A  + +  
Sbjct: 239 ITFGIEACFRPWLERGELVPLLQDYLPSFPGFFLYYPDRRHAPPKLRALVDHVRA 293


>gi|167588715|ref|ZP_02381103.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 327

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 122/294 (41%), Gaps = 8/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +  SGS + AA QL+ +Q +ISR++  LE  +G++L  R    + LT  G 
Sbjct: 29  FELMETFVRIVESGSLSAAAAQLNTTQPTISRRLQALERSLGVRLLQRTTHTMRLTVDGE 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +   E+       + +L+ +  +P G LR+A     GQ    G L  FL  YP + +
Sbjct: 89  RCFKRAKELLASWAAFEADLRGAQEEPEGLLRVAVPHAFGQERFVGPLARFLRDYPRVSV 148

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D      DCAI++ +P     ++  +L  +     AAP  L     P    
Sbjct: 149 EWLLQDEVRDFIGSGIDCAIQVGEP-TDPGVVAIRLSKVPRFVVAAPSVLNGAPVPAEPD 207

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
            L     ++        +   + +    R I   PRIS     +  ++    +LG+G  +
Sbjct: 208 ALAALPWLSLSTYYRNELALTHAVTGETRRIAIRPRISTA---NLYALRSAALLGAGACV 264

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              +++ D+     LV +          VY  YP A     +L  F   +    
Sbjct: 265 GSSWLLADDLAHGRLVHLAPQWEAAPLPVYLTYPYAQFYPSRLVRFAALMREAV 318


>gi|255319964|ref|ZP_05361164.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262379648|ref|ZP_06072804.1| D-serine deaminase transcriptional activator [Acinetobacter
           radioresistens SH164]
 gi|255302984|gb|EET82201.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262299105|gb|EEY87018.1| D-serine deaminase transcriptional activator [Acinetobacter
           radioresistens SH164]
          Length = 304

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 132/301 (43%), Gaps = 14/301 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F   AR  SF+ AA +L+++ +++ + +  LE  +GI LF R   G   L +TE
Sbjct: 7   LNALRAFEASARHQSFSTAAIELNVTPAAVGQLVKSLEDYLGITLFQRSTGGKARLVVTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
                       +++L     +LQ  +   +G L +A +       L   +  F   YP+
Sbjct: 67  AALMALPDIRAGFNRLLLGLEKLQAQTS--AGVLTVAISPAFASKWLLPRIDTFQQAYPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L  + + +D +    D A+R  +    S L+  KL+   +    +P + +  R  L
Sbjct: 125 IDIRLDTNLEPVDFAQHGIDIAVRYGQG-NWSGLVAEKLMDEEVFPVCSPGFYQKYRHLL 183

Query: 182 S-IQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
             ++ L    LI     D+         WL       G  +   L++N+  +++Q  + G
Sbjct: 184 KYVENLLNLPLIHDLTLDVHTGFTTWNTWLKYNQVSNGLAQRG-LKINNSAAVLQAAIDG 242

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL    +V D+     L+R+  D+  + +   Y  Y +  +N  K  AF+ ++  + 
Sbjct: 243 HGVALARSVMVADDLKTGQLIRLYPDMKYSSALAYYIVYRQECQNKPKFVAFKTWLMDEV 302

Query: 295 R 295
           +
Sbjct: 303 K 303


>gi|163857752|ref|YP_001632050.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261480|emb|CAP43782.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 319

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 118/297 (39%), Gaps = 8/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               + L +F  +A  G    A  ++ LS +S+S +++ LE   G  L  R  R ++LTE
Sbjct: 26  RMVLENLALFLRIAEKGGMAAAGREMGLSPASVSERLAALEKYYGATLLARTTRAVSLTE 85

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +  + +  +  ++  + K SG +R +   DLG+  +   +  FL  +  
Sbjct: 86  AGRQLAEGARRLLAEADELEASIRLGTQKISGPIRFSAPEDLGRRRIVPIVDAFLEEHDA 145

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L + ++D+     D AIR    +  SSL  R L        A+P YL    EP 
Sbjct: 146 VSIDLNLTDGNVDLVSQGLDFAIRHG-VLADSSLRARPLGGNRRVVCASPAYLAAHGEPR 204

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              EL  H+ I           D  W   VD RP           N    + Q+   G G
Sbjct: 205 HPDELAGHDCIVMRF---GQELDREWPFQVDGRPHKVLVRGRRVANDGGLVRQWACEGRG 261

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IAL     +  +     LV ++    + +  +   Y  +     +++   + I L  
Sbjct: 262 IALKSIRDIDADLASGALVEVLGGYASSATALQIVYAPSTVLPRRVRMLMDRIALAL 318


>gi|170693823|ref|ZP_02884980.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170141241|gb|EDT09412.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 327

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 132/298 (44%), Gaps = 19/298 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A  GS+T AA  L +S S+IS+ +  LE   G+KLF R  R LTLT +G 
Sbjct: 7   LTGLMAFARAASLGSYTAAARSLAVSPSAISKSVQRLEQHFGLKLFSRTTRSLTLTPEGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L   T  +  + E  +  +  +  +P+G L++AT++ +G ++L   L +F   +P + +
Sbjct: 67  DLLERTQRLLREAEDIEQAVAAARAEPAGTLKVATSLPVGVHILAAALPQFRKRFPKVNV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D A+R+  P   + LI R+L    + A+A+P YLK    P    
Sbjct: 127 DVRLSDRIVDLIEEGIDVAVRVGDPG-DTRLIARRLAPHRICAFASPDYLKARGTPRHPS 185

Query: 185 ELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNS---------YLSIMQY 234
           +L  H+ + F      +      W+      +  P    + ++              +  
Sbjct: 186 DLQSHDCVNFRYQSTGQPAVRPFWMGDKLLELSPPSGLTMDLSDAIATALAAGAGIGISA 245

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                    +    VK    LV ++ +     F ++  +PE+ ++   +KAF  F+  
Sbjct: 246 -------TYIAAPYVKR-GELVPVLFEYAYDRFQLHAIWPESRRSNPAVKAFIAFLQE 295


>gi|167568487|ref|ZP_02361361.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 320

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 138/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   +  +   YPD+ +++ 
Sbjct: 67  ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYPDVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P ++ +L
Sbjct: 127 LSDRIVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPEYLAKHGTPTTVADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN+I      P        +A V      P    + VN    +    + G+GI LL  
Sbjct: 187 QRHNII---RREPNETLLDATIADVAAASRMPLSGNVIVNHLEGLRVAVLGGAGIGLLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++ ++     LV ++ D + P    +Y  Y      + K++ F +F+  +
Sbjct: 244 EVIGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRTFVDFLADR 294


>gi|157376454|ref|YP_001475054.1| DNA-binding transcriptional activator GcvA [Shewanella sediminis
           HAW-EB3]
 gi|157318828|gb|ABV37926.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 303

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 115/290 (39%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L ++T+       L   L +F    PDI +
Sbjct: 68  GYFLDIKDIFVQLADATDRLLARSA--IGSLTVSTSPSFAIQWLVPRLAKFSENNPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI   +    + L   KL    +    +P  L   +      
Sbjct: 126 RIKAVDNEDSSLTDDVDVAIYYGQG-SWAGLRADKLKNEVLIPVCSPMLLNGPKPLEKPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKNHTLLH----DMSRHDWQAWFRQCGINDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV   ++V+      Y    +   + GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVCPFQEVLVSKNAYYLVCQQNHADIGKVAAFREWML 289


>gi|313498457|gb|ADR59823.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 306

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 132/294 (44%), Gaps = 8/294 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L     +   GSF  A  QL    + +S+++S LET +GI+L  R  R L  T++G +
Sbjct: 10  DELATLLALYEQGSFAAAGRQLERHPTVLSKRLSALETRLGIRLVERSTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     E    +   + E  E +    G+LR+A    +G+  L G L +F+L YP + ++
Sbjct: 70  LVAKVLEASRLIAEAEEEAAEGAATVRGRLRLALPAAMGRRWLSGMLADFVLAYPQVIVE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++ +D+  +  D AIR+ + +  + L+  KL        A+P YL    EP   ++
Sbjct: 130 TEYADRFVDLIGEGFDAAIRIGE-LADNRLVASKLCDHVRILCASPQYLARHGEPAQPED 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F  L          L +  R         L+ N   ++++    G GI    
Sbjct: 189 LAAHNCLGFNGLRSFPEWR---LMSDTRQTSVKVAGSLRSNDNEALLEAARRGVGILAGG 245

Query: 246 DYIVKDNPN---LVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           D+++ ++     LVR++       +  +Y   P A  NT  +  F+ ++  + +
Sbjct: 246 DWLMCEDLASGCLVRVLAQWQLDKAAGIYLVRPTARLNTAAMGVFKAWLEDRFK 299


>gi|17547254|ref|NP_520656.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17429556|emb|CAD16242.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 323

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 122/294 (41%), Gaps = 7/294 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +    V+A + SFT AA++L +S++++S++++ LE   G+ L  R  R + LTE G  L
Sbjct: 17  HIHSLTVLATTNSFTAAAQRLGISKAAMSQRVADLEKAAGVPLVRRTTRSVRLTEAGQTL 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              T + Y  +      +++ + +P G +R+   + LG+  +   L  FL   P ++I+L
Sbjct: 77  VDSTRDAYETIAVHFARVKDLAGEPRGLVRVTVPVALGRQQIVPLLPAFLQRCPGVRIEL 136

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++   ++ +  D AIR       +  +   L        A+  YL     P   Q L
Sbjct: 137 DLSDRLHSLTQEGFDLAIRHVTAAPETH-VAWTLCRTQAVLVASRDYLARRGTPEHPQAL 195

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ + +          F         +  P   C   N+  ++ +  + G GIALLPD
Sbjct: 196 VDHDCLYYLRGNEPAAWSFEPRGRKRGRVSVPIRGCFAANNSEAMREAALGGLGIALLPD 255

Query: 247 YIVKDN---PNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  + +     LV ++E           +    P +      + A    +  + 
Sbjct: 256 FSAQHDIDAGRLVPVLEAWRPVGVFGEQILAIRPYSPVVPSAVSALVQHLRTQL 309


>gi|15891140|ref|NP_356812.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15159488|gb|AAK89597.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 297

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR F  VA +G  + AA +L +S+S +SR++  +E E+G++L  R  RG  LTE 
Sbjct: 1   MDIEDLRTFVAVADAGGVSAAARRLGISKSIVSRRLFRIEAELGVQLLARTTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       +    +++T +  +  +  +  G+LRIA  +  G       L E    +P +
Sbjct: 61  GITFRDHAARASAEIDTARETILPA-GELHGRLRIAMPLTFGPTHFAPVLAEMARQHPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I     ++ +D+  +  DCAIR    +Q S+LI +++  IH    A+P Y+K    P  
Sbjct: 120 HIHTSYSDRFVDLIAEGFDCAIR-GAYLQDSNLIAKRVGPIHGKLVASPAYIKAHGSPEM 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H  +  G    + M+        DR +        + +S  ++      G GIA
Sbjct: 179 VEQLVNHQALMQGTEAWQFMDG-------DRIVTVQPQGKFKADSATALAAAAAAGLGIA 231

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD I      +  LV IM     P   VY   P +     K++     +  
Sbjct: 232 WLPDCITHAYLASGALVPIMTRYPVPPGAVYVVRPPSQHPARKVRVLTEMLTE 284


>gi|33601913|ref|NP_889473.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33576350|emb|CAE33429.1| probable LysR family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 295

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 4/288 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
             V+A + SFT AA++L +S+S IS ++  LE E+G+ L  R  R +  TE G+ L    
Sbjct: 2   LAVLADTRSFTAAAQRLGVSKSLISLRMKALEQELGVSLLLRTTRSVHPTEAGALLVERA 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 LE +  E++  +  P G+LR+   + LG+  L   L      +PDI +++ L +
Sbjct: 62  RPALDTLEDSLGEVRNLARAPRGRLRLTAPVALGRQHLGIWLARLGQHFPDIALEVYLSD 121

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + +++  +  D A+R    +  +  + ++L     H  A+P YL     P    EL +H 
Sbjct: 122 RFVNLRQEGYDFALRHADQVSDA-YVSKRLCATRAHLVASPAYLARHGRPAHPSELARHR 180

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            + +          F         +    + CL VN+   + +    G GIA++PD+ + 
Sbjct: 181 CLLYRGDERSPQWSFAPRQGRGAAVHVKPVDCLSVNNSELLRESAAHGLGIAMVPDFSLG 240

Query: 251 DNPNLVRIMEDV---ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           D  +L  ++           ++Y   P +   T   +     +    R
Sbjct: 241 DCADLEPVLPQWDCYAGFGRSLYLLKPFSATPTEAHRVVEQALAEHFR 288


>gi|330986554|gb|EGH84657.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 294

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 121/292 (41%), Gaps = 9/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  
Sbjct: 2   ISIEDLRLAVALSRCESLSAAARVLNVSPPALSMRLRKLETQLGITLANRDARRLSLTAD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  + ++ +  +LE      ++   +  G LR+A     G+  +   L  F  L+P +
Sbjct: 62  GERFAQESAHLLEQLEALPESFKQHDERLVGTLRLAAPFGYGRQRIAPLLARFAKLHPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L           +D  I +   +  S  I R L   H    A+P YL+    P +
Sbjct: 122 RLHLDLRETPW-PDRHDSDAVIHIGS-LNDSLWIARPLTHNHRWLCASPAYLEQHGVPST 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             EL  H  I   +          W  +  +     RI   L  N      ++   G GI
Sbjct: 180 PDELACHRCICIRENDEDVTL---WHLSKGQAKKTLRIEPALLSNDGSVARRWAEQGLGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L   + V D   +  LVR++ D    S  +    P     + +++A   F+
Sbjct: 237 VLRSQWDVSDAIASGRLVRVLADWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|295700214|ref|YP_003608107.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439427|gb|ADG18596.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 298

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 134/286 (46%), Gaps = 10/286 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F   A + +FT  A++L LS S+I++ I+ LE  +GI+LF+R  R + LT +G  L 
Sbjct: 7   LSIFVHAAETRNFTRTAQRLGLSASAIAKSIARLEDRMGIRLFHRSTRNVMLTHEGEMLL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++E  +         PSG+LR+     +    +   L++F++ +P+I++ + 
Sbjct: 67  ESCRRIIEEVEMIEERFTRRGKAPSGRLRVIA--QIPSAYIAPVLRKFIVAFPEIELDME 124

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                  +     D AI        S L+ + L    +    A  Y + C  P++ Q+L 
Sbjct: 125 WGTGAAGLIESGFDVAICPGLD-TDSRLMSKHLGYSRICIAGAASYFERCGTPVTPQDLA 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +   D           L   +   GEP +S + V+   +++     GSGIA LP++
Sbjct: 184 HHVCLHLKDGGKLIRWP---LGLGESDAGEPPVS-MAVSMLGALVNLVECGSGIACLPEF 239

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++    + ++ R++ D ++ S+     +P +     K++AF +F+
Sbjct: 240 AIERQLKDGSMRRVLGDHVSGSYQCVAVWPSSRHMATKIRAFVDFV 285


>gi|260429970|ref|ZP_05783945.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260418893|gb|EEX12148.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 310

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 140/293 (47%), Gaps = 6/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ L+VF  + R    T A   L + Q++I+R++  LE  +G  LF R A G  LT  
Sbjct: 12  FDWNDLKVFLALHRMKRMTDAGRVLGVDQTTIARRVKALEAAIGTHLFVRRADGFELTRA 71

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++     E+ H  E    ++    ++ +G++RI     LG   L   L  F    P++
Sbjct: 72  GLRILPFALEIEHSGEKLHEQISGEDMRLAGRVRIGAPDGLGTFFLPAILTRFQRDNPEV 131

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++++  ++   ++      A+ L  P +S  L+ RKL   ++H +A+P YL+    P+S
Sbjct: 132 DVEVVPSSRQFRVAEQEVHLALWLSLP-ESGRLLARKLADYNLHFFASPDYLERHGMPMS 190

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H L+ +   +      F+        +G  R+     +S  +  +    G+G+ 
Sbjct: 191 LADLQDHRLVGYIADM-----LFSPEVRFLEELGLRRLVRFASSSMAAQREAIREGAGLG 245

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +LP ++  ++P LV ++ D      TV+    ++ ++  +++A   ++   AR
Sbjct: 246 ILPRFMALNDPGLVPVLTDRYLLKRTVWIVSHQSTEDLARVRAVSEYLQRAAR 298


>gi|113867131|ref|YP_725620.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113525907|emb|CAJ92252.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 302

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 131/296 (44%), Gaps = 11/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L+ F   AR  SFT AA +LH++Q ++S+Q+  LE  +G++LF R  + L LT  G
Sbjct: 7   SLTELQAFEAAARHNSFTVAARELHVTQGAVSKQVRSLEAYLGVELFQRVRQRLMLTTAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +         ++LE   +EL     +  G L IA+   LG   L   L +F   +P+++
Sbjct: 67  ERYLERIGPSLNELEAATVELMARQGRG-GVLHIASMPTLGAKWLIPRLPQFFARHPEVK 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN--CREPL 181
           ++ +   +  D S    D AIR    +   SL    +    +     P  L +       
Sbjct: 126 LEFVPHAQGYDFSEPDLDAAIRFGDGVWPGSL-ADYMTGREVLPVCRPGLLASEPGGVAP 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L ++ L+     +P+   D  W AT+  P  E   S  + + +  + Q  + G GI
Sbjct: 185 TPAALLRYPLLHHT-TVPEAWPD--WFATLGVPTREA-WSGARFDQFSLLTQAALSGLGI 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+P  ++++      LV      +      Y CYPE  ++   L+ FR ++   A
Sbjct: 241 ALIPRCLIEEELATGALVVAHPAQVLAKKGYYLCYPEQKQHLPALRTFRAWVMEGA 296


>gi|15598761|ref|NP_252255.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107103078|ref|ZP_01366996.1| hypothetical protein PaerPA_01004147 [Pseudomonas aeruginosa PACS2]
 gi|218890208|ref|YP_002439072.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|296387931|ref|ZP_06877406.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313108916|ref|ZP_07794894.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9949718|gb|AAG06953.1|AE004777_6 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|218770431|emb|CAW26196.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310881396|gb|EFQ39990.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 306

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+VF   + SGS + AA QL +S +  S  +  LE+E+ ++LF R  R L LT +G 
Sbjct: 4   YDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  LQ    + +G L+++   D G+NLL   L EF   YP + +
Sbjct: 64  AFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D AIR   P   SSL+   L         AAP YL    EP   
Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGAP-ADSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN + +   +   + D        R +          +    + ++ + G G+  
Sbjct: 183 DDLREHNCLLY--QLGGRVHDRWAFQRGRRSLTLTVAGDRVCDDADVVRRWALAGKGLVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V ++     L  ++ +    +  +        + T  +   R F+  +
Sbjct: 241 KSWLDVAEDVRAGRLRLLLPEWQGEATPMNLLCTHRAQLTRPVTLLRAFVRER 293


>gi|229587606|ref|YP_002869725.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229359472|emb|CAY46313.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 316

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 119/297 (40%), Gaps = 10/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F   AR  SFT AA +L  +Q +IS+QI  LE ++ I+LF R  RG+ LT+
Sbjct: 7   DLSLDLLRAFEAAARHRSFTAAAMELGTTQPAISQQIKRLEEQLAIRLFDRIYRGIELTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L          +      + +        L++AT        L   L  F    P 
Sbjct: 67  AGALLFEHVQGGLQAINAGLSVITQQDQHE--VLQVATDFAFAAYWLMPRLHRFHAANPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPI--QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           + + L+   ++        D A+        Q  SL    L    +    +P +LK+   
Sbjct: 125 VDVSLVTSERNHATLRSDIDVAVLFGDGRFKQGDSLW---LFNEEVFPVCSPQWLKDQAT 181

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PL++Q L    L+           D++ +         P    L+ ++Y  ++Q  + G 
Sbjct: 182 PLTVQNLHDFPLLHLRQENNSQWFDWSGVFRELGIATAPTPGQLRFDNYTLLIQAAIAGQ 241

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+A+   ++V +      L R + D +   F  Y   P+  +    ++ F +++  +
Sbjct: 242 GVAIGWRHLVDNLLEQNWLCRPLSDTVISRFGYYVVQPQRKRRGQLVERFVDWLVAE 298


>gi|146282290|ref|YP_001172443.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145570495|gb|ABP79601.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501]
          Length = 296

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 137/294 (46%), Gaps = 6/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  VAR+G  T AA +L +  +++SR++  LE  +G++LF R   G  LTE 
Sbjct: 1   MDWDNLRYFLEVARAGRLTTAARRLAVDHTTVSRRLQALEKSIGLQLFLREPGGYKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +       +  L       SG++RI  T   G  +L G L      YP +
Sbjct: 61  GRNLLPRVEAMESASVAIEHSLPSMGDGLSGQVRIGATEGYGTVMLAGQLTGLSRRYPHL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L+   + + +S   AD  I L +P +   +I R L    +  YA+P YL       S
Sbjct: 121 NIDLLALPRAVRLSRHEADIVITLERPERGPFIITR-LTDYVLRLYASPAYLDEHPPIRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  +++ D +      F+        I +PR   L+  S L+  +   +G+GIA
Sbjct: 180 REDLAEHRFVSYVDDL-----LFSKELLFLDGIADPRSVGLRSTSLLAQQEAVAMGAGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +LP +    +P L  ++ + ++ + T +   P   K+  +++   +++   A+ 
Sbjct: 235 ILPAFSADADPRLRLLLPEEVSFTRTFWMLMPIEFKDLARMRTTWDYLKDMAQQ 288


>gi|59714094|ref|YP_206869.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59482342|gb|AAW87981.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 302

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 143/297 (48%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DW    +F  VA+  SF+ AA +L    +++SR+I  LE+++G +LF R+ R +TLT
Sbjct: 2   MKEDW---LLFAKVAQYQSFSEAARRLSTPTTTVSRRIQQLESQLGERLFIRNTRSVTLT 58

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L   T  +   LE  Q  ++  S + SGKL+++T+  L Q LL   +  F   +P
Sbjct: 59  EFGQRLLPKTKLLEMALEELQSTIESHSQEISGKLKLSTSDTLSQFLLPSLISSFSSQHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I   +   N++  +  +  D + R+ + ++ S+LI  KL  I     AAP +++     
Sbjct: 119 LINFDISSSNRNEQLLNENIDFSFRIGQ-LEDSNLIAYKLCEIEYVLVAAPSFIEKSTIG 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGS 239
           ++ + L +H  I    +I    ++  W  + D  + E       +V++          G+
Sbjct: 178 ITPETLIQHPCI----IIDIDGKEVPWFVSSDDHVLELTTYKKYRVDNLFIAKSLAESGN 233

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           GI LLP ++ K+      LV ++++V      +   Y +    + K K F  +I  +
Sbjct: 234 GITLLPKFVAKEAIKTNTLVTVLDNVNIQKNPLSLIYFDKHFLSEKSKCFLKYIKEQ 290


>gi|126445047|ref|YP_001061426.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126224538|gb|ABN88043.1| transcriptional regulator [Burkholderia pseudomallei 668]
          Length = 343

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 135/295 (45%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 36  MKVTLDELQAFAAVVDTGSITAAAQQLGLTVSATSRTLARLEGKLKTTLLRRTTRRLELT 95

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E+ + ++     KPSG+LR+        +++   ++ +   +P
Sbjct: 96  EEGRTFLNSARAIIDSVESAEEQMLARREKPSGRLRVDAASPFMLHVIVPLVRGYRERFP 155

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R +    +   A+P YL    +P
Sbjct: 156 RVELELNSNEGVIDLLERRTDVAIRIGR-LKDSTLHSRLIGNSRLRILASPAYLDAHGQP 214

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L KH L+ F    P+ +  +  L     P        +  +S  ++ Q  + G+G
Sbjct: 215 RKAGDLGKHALLGFNQ--PESLNVWPILGADGEPCRIE--PAVWSSSGETLRQLALDGAG 270

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIF 291
           I  L D++   +     LV+I+          ++  Y      + ++ +F +++ 
Sbjct: 271 IVCLSDFMTAQDREAGRLVQILARHTQDVRQPIHAVYYRNTAISSRIASFVDYLV 325


>gi|221066272|ref|ZP_03542377.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220711295|gb|EED66663.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 292

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 12/293 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  V R G+F+ AA  L +  S I++++S LETE+  KLF R  R +T+TE
Sbjct: 1   MDIVTHVQTFVAVVRYGNFSEAARHLGVVPSVIAKRVSQLETELNTKLFERTTRRVTVTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG KL+   + V  + E     ++    KP G L++     L    L      FL   P 
Sbjct: 61  QGEKLYARATNVVAEFEDLVRSVERDEGKPEGHLKVMAPTTLTMTELGQVFCGFLQKNPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L+++  + S    D AI   +      ++   L  +     A+P YL+   +  
Sbjct: 121 ITLELTLEDRSTNPSEGGFDMAIS-GRAASYEGVVDVPLRPVKPLLCASPFYLRAHTQIN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L     + F           NW    +R  +       L  +   +++Q  V G G
Sbjct: 180 HPRDLADCACLVFSAT------GRNWTFQSNRGTLSIDVHPRLMADDNRTLLQAAVAGLG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +ALLP YI  +      L  ++              P       ++KA   ++
Sbjct: 234 VALLPTYIASEAIAAGELEILLPGYAPQENWFKAYVPRRRMGVQRVKALLTYL 286


>gi|170703122|ref|ZP_02893939.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170131970|gb|EDT00481.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 299

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 123/297 (41%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +W++ R F  V   GS + AA  L ++Q +  R ++ LE   G  LF R   GL  T
Sbjct: 3   IDLNWERYRTFLAVLTEGSLSGAARALGITQPTAGRHVAALEVAFGQTLFTRSPSGLLPT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E    L      +       +           G +RI+ +  +   +L   L +    +P
Sbjct: 63  EAALALRGHAEALRSAAAAFERAAASHGAGVRGTVRISASDVIAVEVLPPMLTQLRRDHP 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L+  ++  D+    AD A+R+  P Q + L+ R++  I +  +A   YL     P
Sbjct: 123 GLVIELVPTDRIQDVLNREADIAVRMAPPAQDA-LVARRVGEIDIGLHARDDYLARNGTP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL  H LI F  + P     F   A    P+ +     L+ +S L+ +     G G
Sbjct: 182 SATSELAHHALIGFDTVTP-----FIRSAGRGMPLWKRDAFALRTDSNLAQLAMIRAGYG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I    + + K +  LVR++ D  T     +    E L+ + +  A  + +    R +
Sbjct: 237 IGFCQNGLAKRDARLVRVLPDGPTMKLETWVVMHEDLRTSPRCHAVFDALANGLRAY 293


>gi|134301634|ref|YP_001121602.1| transcriptional regulator, LysR family protein [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134049411|gb|ABO46482.1| transcriptional regulator, LysR family protein [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 298

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 137/290 (47%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L++F   A   SF+ AA+ + +S   +S+QI  LET+    LF R+ R + LTE G 
Sbjct: 4   LERLKIFIKAAHLKSFSKAAKAIGISPPVVSKQIQILETKYRKSLFNRNTRTVHLTEYGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   S + ++LE T+ ++    +    +L+I+     G   L     +F + YP  ++
Sbjct: 64  LLYEKASLILNELEATKEKIFAEDILIDSELKISAPNSFGIKYLCNIFSKFAIDYPKYKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L +  I+I  +  D  IR+   +  S+LI +KL+ +     A+  YLKN   P +I+
Sbjct: 124 NINLSDSYINIIDEDFDLVIRIGA-LDDSNLITKKLMPMPSLLCASEQYLKNYGIPKTIK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  I + +       +   L +V++         +  NS   ++Q C+ G GIA L
Sbjct: 183 DLENHLFIQYNN---HSSSNRIILESVNKTEIINVRQRIVTNSAGMMLQSCLDGLGIAKL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
           P + + D   +  LV ++ +   P    +Y           K++    +I
Sbjct: 240 PLFEIIDKLHDKKLVHLLPNTRNPIEKNLYLISSRDKYRLKKVRLLSAYI 289


>gi|190890816|ref|YP_001977358.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190696095|gb|ACE90180.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 306

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 133/293 (45%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D++R F  VA  G+ +  A++L + QS+++R ++ LE  VG+ L  R  R +TLTE+GS
Sbjct: 8   FDRMRTFVRVAERGNLSMVAKELGIGQSTVTRHLNELEEAVGVALLSRTTRRVTLTEEGS 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    ++   +E    E + +   P+G +R++ T  LG   +   + +F  L+PDI++
Sbjct: 68  RYYTNCLQILRLVEQAAEEARAARQAPAGAVRLSCTAALGVMHVTRMIFDFQDLHPDIRV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ ID+  +  D A+RL  P+  SS+    +         AP YL     P    
Sbjct: 128 DLNLTDERIDLVREGVDVALRLG-PLADSSMKLHAVGESQRLLVGAPAYLSARGRPERPA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++  I   ++        +  A+    +  P    L+V+  L+  +    G GI   
Sbjct: 187 DLSRYETIVMSNVAGSNQLLLS--ASDGTSLVVPASGRLRVDHGLAAREALAAGRGIGPT 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             ++V    D+  L  ++ D       V            +++   +F+  + 
Sbjct: 245 HLWLVHDLLDDGLLEVVLGDYRPSPVPVSLLIVPERAAIARVRLLVDFLAAEV 297


>gi|190895534|ref|YP_001985826.1| transcriptional regulator LysR family [Rhizobium etli CIAT 652]
 gi|190699479|gb|ACE93563.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 317

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 10/301 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT 
Sbjct: 6   QFTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTA 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +  + E  + +L + S+   G +R++             L  F   +P 
Sbjct: 66  MGTRFVETAERMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFCATVLHRFAARHPH 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+   + + +S   AD ++ L +P +       KL   H+  Y +  YL       
Sbjct: 126 LALELVTIQQIMSLSRKEADLSVVLDEP-KGGPYFAEKLTDYHLQIYGSRDYLAKAPAIT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L +H  +++ + +       ++L+ V      PRI    Q +S  + +     G G
Sbjct: 185 CRDDLLEHPFVSYIEEMIFA-PGLDYLSDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--DWK 298
           + +LP +     P LVR++   I      +      LK   +++A  +F+    R  D +
Sbjct: 239 LCILPYFFASRYPELVRVLPAEIDLKRQYWITCHRDLKQAPRVRAVIDFLREAVRGEDAR 298

Query: 299 F 299
           F
Sbjct: 299 F 299


>gi|307292571|ref|ZP_07572417.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306880637|gb|EFN11853.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 300

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 119/301 (39%), Gaps = 8/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  VA +GSFT AA +L++S   ++  +  LE  +G++LF R  R + LT 
Sbjct: 1   MDQLTAMEAFVAVAEAGSFTRAALRLNISTPMVTLHVRRLEEHLGVRLFNRSTRRVDLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G             + T  + ++      +G++R+     +GQ  +   L EF  L+P 
Sbjct: 61  EGGHYLTYAQAALDAVATADMAVRPG-AGIAGRVRLDAPASMGQAFIMPALAEFQRLHPR 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L ++     +D  D  IR  +    +      L T  +   A+P Y+    +P 
Sbjct: 120 LILDLTLGDRGTFFRVDGFDLVIRAGEA-PPTGWKTVTLGTTRLICLASPDYIAQHGQPA 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I +  +          L   DR +     +    N   +I+   + G G+
Sbjct: 179 EADDLAQHRAILYASVETPGGNPLR-LRQGDRTVRVRPPTAFTFNDGAAILSATLAGLGV 237

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
               + + +D+     L+ ++ +   P   V             ++A   F+  +  DW 
Sbjct: 238 GQTLEMLARDHIDAGRLIPLLPESSWPRLPVVLMGAPDRVALPHVQAALAFLTERI-DWN 296

Query: 299 F 299
            
Sbjct: 297 L 297


>gi|301049426|ref|ZP_07196388.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
 gi|300298803|gb|EFJ55188.1| LysR substrate binding domain protein [Escherichia coli MS 185-1]
          Length = 286

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 124/289 (42%), Gaps = 17/289 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +LQ  S    G L ++       + L   L  F   YP I +
Sbjct: 68  SYFLDIKEIFSQLTEATRKLQARSA--KGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++  D   D  D AI   +      L   KL   ++    +P  L   +   + +
Sbjct: 126 RIQAVDRQEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ---VNSYLSIMQYCVLGSGI 241
           +L KH L+   D   +  + +       R +G   I+  Q    +    ++Q  + G G+
Sbjct: 185 DLAKHTLLH--DASRRDWQTYT------RQLGLNHINVQQGPIFSHSAMVLQAAIHGQGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           AL  + + +   +   LV    DV+      Y    ++    GK+ A  
Sbjct: 237 ALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAALL 285


>gi|170751077|ref|YP_001757337.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657599|gb|ACB26654.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 288

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 131/294 (44%), Gaps = 12/294 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D D LR F  VA +G  + A+ +L++++S +SR++  LE EVG +L  R  RG  LTE 
Sbjct: 1   MDVDDLRTFVEVADAGGVSAASRRLNMAKSIVSRRLLRLEAEVGTQLLARTTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      + V  +++    E         G LR+A     G       + E    +P +
Sbjct: 61  GTTFREHAARVCAEVDAAL-EAVSPGGALRGLLRVAVPSTFGPTHFAPAIAELTRRHPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I     ++ +D+  +  DC IR+   +  S+L+ R++ +  +  +A+P Y+     P +
Sbjct: 120 RINCRYSDRYVDLVTEGFDCGIRVGY-LPDSNLVARRIGSFSVRLFASPDYVATHGAPET 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +++ +H  +                +   +P         + +S ++I +    G+GIA
Sbjct: 179 PEDVPRHPAVMIATETWT-------FSAGGKPFPVRPTGRFKADSAIAIAEATAAGAGIA 231

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LPD I +       L+ +M     PS  ++   P    ++ K++A  + +  +
Sbjct: 232 ALPDVIAEPYVAAGTLIPVMPRYALPSIGMFVVRPPGQHSSRKVQALTDLLIER 285


>gi|319943933|ref|ZP_08018213.1| LysR family transcriptional regulator [Lautropia mirabilis ATCC
           51599]
 gi|319742694|gb|EFV95101.1| LysR family transcriptional regulator [Lautropia mirabilis ATCC
           51599]
          Length = 306

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 122/302 (40%), Gaps = 10/302 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS  + D L V   VA S SF+ AA  L L   ++S+QI+ LE  +G  LF R+ R L +
Sbjct: 1   MSLRNLDDLHVLVRVADSASFSAAARSLQLDPKTVSKQIARLENALGTPLFERNTRNLRI 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G  +      V   L+  Q   Q       G +R+      G+  +   + EF   +
Sbjct: 61  TDEGRTIAARARSVLSILDEIQQVGQGDDDTLRGVIRLTAPAPFGRKHVAPAIAEFSRRH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +   L L ++ +D+  D  D AIRL +P   S L+   L        A+P YL     
Sbjct: 121 PQVGFDLRLTDRMVDLYGDGFDLAIRLDEP-TDSRLVSTPLALNRGMLVASPGYLAAHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++L +H  +               L    R         L  +S   +  +C+ G 
Sbjct: 180 PHRPEDLSRHQALLPAGADGAQTTWA--LRQGRRERTVVMNGALGSDSGDILHAWCLAGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI+L   + + D   +  LV ++ D   P   +            +L  F  F+   AR 
Sbjct: 238 GISLRETWDIHDALRSGRLVPVLPDWTVPVTHISAVRARRDPVPRRLDVFIEFL---ARR 294

Query: 297 WK 298
           W+
Sbjct: 295 WR 296


>gi|294013159|ref|YP_003546619.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292676489|dbj|BAI98007.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 297

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/280 (22%), Positives = 112/280 (40%), Gaps = 5/280 (1%)

Query: 12  YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTS 71
             +AR GSF  AA +L LS +++S  I+ LE  +G++LF R  R ++LT+ G        
Sbjct: 13  LAIARRGSFRAAALELGLSTTALSNAIAKLEGRLGVRLFNRTTRSVSLTDAGRNFVEQVG 72

Query: 72  EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK 131
                L       +     PSG LRI       + +L   L +FL  YP + I L+ + +
Sbjct: 73  PAVSTLHEAMGAARSQQETPSGTLRINAFATGAREILSPLLLKFLRHYPKVHIDLVTEGR 132

Query: 132 DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL 191
            +DI  +  D  +R    + +  +             A+P Y K   +P +  +L +H+ 
Sbjct: 133 IVDIVAEGFDLGLRTANLVPTDMIAIPVGPPRSFAVVASPSYFKVNDKPRTPPDLLRHSC 192

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
           I     +P             +P+       + ++         +   GI    +  V++
Sbjct: 193 IRV--RLPNGALHRWHFEKNGQPVQIDVAGPITLDEASLARIAVLNDVGIGYFMEADVRE 250

Query: 252 N---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +     +VR++ED   P   +   YP     +   KA  +
Sbjct: 251 DVQAGRMVRVLEDWTPPIAPLCLYYPTRRNPSAAFKALID 290


>gi|91784408|ref|YP_559614.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91688362|gb|ABE31562.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 315

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + L +   +  +G+ + AA +L +S++++S  ++ LE  +G++L  R  R +  TE
Sbjct: 13  AVDVNSLTLLVEILDAGNLSEAARRLKMSRANVSYHLNQLERSIGLQLVRRTTRRVEPTE 72

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L+     + + L   +  +        G++R++     GQ ++   L  F  LYP 
Sbjct: 73  IGLQLYEHGRAIQNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMSDWLIAFKRLYPG 132

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P + +    P 
Sbjct: 133 IVLDVMFENRVEDLMRDEVDIAVRVMSE-PPQNLVARDMGPVRYVACASPAFAQTHGMPR 191

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L    LIT   +  +              + EP    L   ++L + Q  + G G+
Sbjct: 192 QLDDLRTAPLITSAVVGRQLRVAAYLRDERHEVLLEP---TLISENFLFLRQAVLAGLGV 248

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKA 294
            L+PDY+V+D+    + V  +++     F   +Y  Y     +T     F +FI  +A
Sbjct: 249 GLVPDYVVQDDLRRGDAVTALDEWRLSIFGTHMYMLYMPNRHHTRAAATFIDFILQQA 306


>gi|262372899|ref|ZP_06066178.1| LysR family transcriptional regulator [Acinetobacter junii SH205]
 gi|262312924|gb|EEY94009.1| LysR family transcriptional regulator [Acinetobacter junii SH205]
          Length = 309

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 9/293 (3%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE ++ + L +R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLEQDMDVTLLHRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  +I + E      G LRIATT +LG   +   L  ++  +  
Sbjct: 62  AGQAFFLSCQEMLAAAERGKIRINELRDDLVGDLRIATTPELGALHVIPALSHWMSAHKA 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I    D++ ID+  +  D AIR+   I    L    L  +     A+P YL       
Sbjct: 122 LAIHFEADHRYIDLIEERIDIAIRMSLKIDDHQLTAVPLARVDQVLVASPSYLNQAPPIS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             ++L  H L+     + +  + F++   +   +    + + L  N+       C  G G
Sbjct: 182 RPEDLRHHELL--PVTLMQNYQHFSFRHGLSGEVVNIDMKTRLSTNNVFVAKSLCQQGHG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +    ++    N +LV ++ D   P++T++    +  +   K+    + +
Sbjct: 240 IARILYMDIQKELVNGSLVEVLPDWNMPAYTLHALTSKREQYPMKVHRCIDAL 292


>gi|328725366|ref|XP_003248445.1| PREDICTED: uncharacterized HTH-type transcriptional regulator
           yafC-like, partial [Acyrthosiphon pisum]
          Length = 253

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 120/247 (48%), Gaps = 5/247 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               ++LR +  V  +GS T AAEQL  + S ISR +S LE+++   L +R  R L LTE
Sbjct: 3   KITLEELRAWVAVVDTGSITAAAEQLDQTSSGISRALSRLESKLQTTLMHRTTRRLALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        ++   +E  + ++ +    PSG+LRI        +++   + EF   YP 
Sbjct: 63  EGLIFLDHARQILSSVERAEEQIAQRRDIPSGRLRINANAPFMLHVIVPLVAEFRQRYPL 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ++L  D+  ID+     D AIR+ + ++ S+L  R L +      A+P YL+    P 
Sbjct: 123 IQLELNTDDIMIDLLEQQTDIAIRVGE-LRDSTLRARVLGSSATRLVASPAYLQQYGSPE 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S++ L  H L+ F  L    +    W    +    +P    L  +S  ++ Q  + G GI
Sbjct: 182 SVEALSAHQLLGFSQLDAHNVWPV-WQREGEFLQIKP---TLSASSGETLRQLALAGQGI 237

Query: 242 ALLPDYI 248
           A L D++
Sbjct: 238 ARLSDFV 244


>gi|310815893|ref|YP_003963857.1| transcriptional regulator LysR family precursor [Ketogulonicigenium
           vulgare Y25]
 gi|308754628|gb|ADO42557.1| transcriptional regulator LysR family precursor [Ketogulonicigenium
           vulgare Y25]
          Length = 299

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 134/302 (44%), Gaps = 11/302 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D + +F  V  +G F  AA +LHLS S++++ I+ LE  +G+ LF R  R L LT
Sbjct: 1   MHTPGDDIGIFLAVCDAGRFAGAATRLHLSPSAVAKAIARLEARLGVTLFARSTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G+       +   +++ T+  L+     P+G LRI+     G  ++   L      +P
Sbjct: 61  DEGAIYAETCRQARAEIDRTEGMLRALHSTPAGLLRISLPPLFGAEVIAPALFSLTDDWP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q+Q+    +  D+     D A+R+  P   + +  R++ T  +   A+  Y+     P
Sbjct: 121 LLQLQIDTSTQRNDLIGAGIDFAVRIGAPPPLAGITARRIGTQRVMLCASADYVAARGVP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L  H LI     +P      + + T+           L ++  L      + G G
Sbjct: 181 RRLADLGAHRLIAMPQGMPWQFSAQDHVETLL------PAGPLHLDGSLLTRAAIMAGHG 234

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKAR 295
           I ++P ++++D      +V ++ + +T    +Y  +P       +L+   + +    KAR
Sbjct: 235 IGMVPAWLMRDALAARQVVAVLPEALTGDLPIYALWPTQSAILPRLRVVIDAVSAVAKAR 294

Query: 296 DW 297
            +
Sbjct: 295 SF 296


>gi|190892732|ref|YP_001979274.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190698011|gb|ACE92096.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 301

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 127/294 (43%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            WD  R F  V + GS + AA +L L+Q +I R +  LE  +G +LF R   GL  T+  
Sbjct: 6   SWDFYRSFLTVLQHGSLSAAARELGLTQPTIGRHVDALELAIGAELFTRSPNGLLPTDAA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +                + +G +RI+ +  +   +L   L      +P++Q
Sbjct: 66  LALKPYAETLAATTAALLRTASSQRERVAGTIRISASEVIAVEVLPAILGPLQDAHPELQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   +   D+    AD A+R+ +P Q + L+ R++  I +  +A   YL+    P S+
Sbjct: 126 IELSASDAIEDLVNREADIAVRMAEPQQDA-LVVRRIGDIPLGFHAHRRYLERYGIPQSV 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H LI F             L     P+ +      + +S L+ +     G GI L
Sbjct: 185 ADLANHRLIGFDRQTAYVR-----LVMKRYPVPDGIKFAYRTDSNLAQLAAIRAGVGIGL 239

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               + ++NP+LV ++ D        +    E+LK++ + +   + +    +D+
Sbjct: 240 CQIGLARENPDLVHLLADAFNIPLGTWVAMHESLKSSPRCRVTFDTLVNGLQDY 293


>gi|160877176|ref|YP_001556492.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160862698|gb|ABX51232.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315269380|gb|ADT96233.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 308

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 124/297 (41%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F  VA  G+ + AA ++ +S +S S  I  LE ++   LF R  R L LT Q
Sbjct: 1   MLINDLALFVRVADCGNISAAAAEMDISAASASAAIKRLEKQLDTSLFIRTTRSLRLTVQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L   +  +     K SG L ++ + D G+NL    L EFLL +P +
Sbjct: 61  GERYLIHCRRALSDLALGEQAIASDKGKISGTLSLSVSSDFGRNLFVPWLDEFLLDFPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L L +       D  D A+R  KP Q S+ +   + ++     A+P YL       S
Sbjct: 121 QVRLHLGDNISSFYHDKIDVAVRYGKP-QDSNQVAFPICSVDRVLCASPEYLAKFGVLNS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGI 241
           +++L +HN + +            WL   D    + R++  +  N      ++ V G G+
Sbjct: 180 LEQLVEHNCLFYKL---DGRTHDQWLFRRDGQEFKVRVTGNRSANDAEIAGRWAVAGKGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                  + D+     LVR++ +       +Y   P     T  +   R  +  + +
Sbjct: 237 VFKSSLDLADDLISGRLVRLLPEYQGEPVDLYLVCPGREHVTPVVLLLREMLRQRTQ 293


>gi|254521917|ref|ZP_05133972.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219719508|gb|EED38033.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 297

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 145/296 (48%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +R F  V  +GSFT AA  L +S++++++ +  LE  + ++L  R  R +++T 
Sbjct: 1   MDRFEAMRAFARVVETGSFTRAALTLQVSRTTVTQLVQQLEAHLRLRLLNRTTRRVSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   + +  +LE  +  L +++ +P G+LR+       +  L   L +F + YP+
Sbjct: 61  DGAAYYPRIARLLAELEEVEGGLGDAATQPRGRLRVDVPGPYARLRLVPALPDFQVRYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++++D+  D  DC IR   P    +L+ R L  + +  +A+P Y++   +P 
Sbjct: 121 IQLDIGVSDREVDVIADNVDCVIRGGTP-ADPALVARPLGALPIGFHASPGYVQRFGQPA 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + L+   H+++ F          FN     +R   + R   +  +   + +   + G 
Sbjct: 180 DPRALEGPDHHMVGFLSPRSGRARVFNAQRGDERIEVQGR-YTIGFDDGNAYLAAALAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+   +     L+ +++D   PS  ++  +P     + +L+ F +++  
Sbjct: 239 GVVALPSYMAAPHVARGELLPVLQDWQLPSMPMHVMFPPNRHMSQRLRVFIDWVVE 294


>gi|187926712|ref|YP_001893057.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241665044|ref|YP_002983403.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728466|gb|ACD29630.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240867071|gb|ACS64731.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 306

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 11/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L++F  +  +G+ + AA +L  ++S++S ++   E  +G++L  R  R +  TE 
Sbjct: 1   MDLNALKLFVEIVDAGNLSAAARRLQTTRSNVSHRLKAFERALGVQLLRRTTRRVEPTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ ++     +  ++      +        G +R++    LG  L+   L  F   YPDI
Sbjct: 61  GAGIYEHGRSILREMAAADALVSSLGKSLQGSVRLSVPTGLGHLLVSPLLVAFKRAYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +  DN+  D+  +  D A+R+       SL+   L  +     AAP YL     P S
Sbjct: 121 RLDVRFDNRVSDLIGEDVDVALRIVSN-PPESLVATLLDEVDWVLCAAPDYLAARGVPSS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ L  H +++     P   +     A + D          +  ++YL +      G+G+
Sbjct: 180 VEALRDHTIVS----APAVGQPLRLAAQLGDERTAVTLDPGVSSDNYLFLQAAVRAGNGL 235

Query: 242 ALLPDYIVKDNPNLV---RIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFL 292
            +LP Y   D+       R++       F   +Y     +   T   +   +F+  
Sbjct: 236 GILPYYAAADDLREGYIKRVLPAYRFSVFGSRLYMLAMPSRYRTLATRHLLDFLKA 291


>gi|119472539|ref|ZP_01614587.1| DNA-binding transcriptional dual regulator [Alteromonadales
           bacterium TW-7]
 gi|119444863|gb|EAW26163.1| DNA-binding transcriptional dual regulator [Alteromonadales
           bacterium TW-7]
          Length = 298

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 128/299 (42%), Gaps = 14/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AAE+L+++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALKAFEAAARHLSFTKAAEELYVTQAAVSHQIKTLEEHLGLKLFLRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +L        G L ++ T       L   L  F  L+P+I +
Sbjct: 68  GYFLDIKEIFTQLIDATEKLLARGA--KGSLTVSLTPSFAIQWLVPRLSLFNELHPEIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D AI   +    + +   KL T ++    +P  L   +      
Sbjct: 126 RIKAQDQDENSLSDDVDIAIYYGRG-HWNGVQAYKLHTEYLVPLCSPMLLSGPKPLDQPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+   D   K  +   W+ T      +     +  +    ++Q  V G G+A+ 
Sbjct: 185 DLAQHTLLH--DTTRKNWK--TWMKTAGVRNVQVNQGPI-FSHSSMVLQAAVHGQGVAIG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKARDW 297
              + K   D   LV      +      Y    E+    GK+ +F+ +   +  + +++
Sbjct: 240 NSVLAKPDIDAGRLVIPFSHSLESKNAYYLVLRESQTELGKIVSFKEWMLSLVEQEQEY 298


>gi|299529506|ref|ZP_07042943.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298722369|gb|EFI63289.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 326

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 131/298 (43%), Gaps = 13/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VAR  +F  AA++L L+QS++SRQI  LE EVGI LF RH+R + LT  G++L
Sbjct: 21  HLRAFLAVARHLNFRAAADELALTQSAVSRQIQSLEDEVGIPLFLRHSRAVELTGAGAQL 80

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     ++ T  +++++  +    + I T        L   L+ F   YPDI I++
Sbjct: 81  LHAVQPALESIDATVRQIRQTVGRK--SVAITTWASFAAMWLIPRLEAFQRAYPDIDIRI 138

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+     D AIR    +  +S   + L    +   A+P  L++     S  + 
Sbjct: 139 DTGDAVVDLETTDVDLAIRYSAGVADAS--AKALFGEELVLVASPALLRSGPAVHSPADA 196

Query: 187 DKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++ LI  GD+      + +    W A       +P    L  N    I+Q  + G G+A
Sbjct: 197 ARYTLIETGDVHRMPQLEWLSWQRWFAANGCDQLQPP-RWLYFNYAHQIVQAALAGQGLA 255

Query: 243 LLPDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +    +V D      L+ ++ +       + +           +++AF  ++  +AR 
Sbjct: 256 IARLPLVADALAAGTLIEVLPEHRLASPLSYWLLQGPRSSERPEVQAFCQWLMEQARQ 313


>gi|307130356|ref|YP_003882372.1| transcriptional regulator [Dickeya dadantii 3937]
 gi|306527885|gb|ADM97815.1| Transcriptional regulator [Dickeya dadantii 3937]
          Length = 306

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 118/300 (39%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  VAR+G F  AA    +S S +S  +  LET++ I+L +R  R +  T
Sbjct: 1   MNIDLKDLEAFVAVARAGGFRDAARANGVSASGLSEAVRRLETQLAIRLLHRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L         ++E     +     +P+G LR+   +   + +L G +  FL  YP
Sbjct: 61  EAGQSLLARLVPALTEVENALDVVNGFRDRPTGTLRLNVPVSAARLVLPGLIAPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++++   +D+     D  IR  + ++   +I   +      +   A+P Y   C 
Sbjct: 121 DIKLEVVVEESFVDMLAAGCDAGIRYGERLEQD-MIAVPIGPRSQRLAIAASPAYFARCG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYC 235
            P   ++L  H  +      P               +       L V        ++   
Sbjct: 180 RPAHPRDLVGHACL--RGRFPSGTMPLWEFERNGEVVQVDPAGPLVVQIGGGTDLLIDVA 237

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G GI  L +  ++   +N  L   +E         +  YP        L+AF +FI  
Sbjct: 238 IAGVGIVYLFEDWLRPHLENGTLEPAIEPWWQRFPGPFLYYPGHRLIPTPLRAFIDFIKA 297


>gi|71281856|ref|YP_269784.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147596|gb|AAZ28069.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 289

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 128/294 (43%), Gaps = 8/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   + +F    + GSF  AA++L LS S +S Q++ LE  VG  L YR  R L+LT
Sbjct: 1   MIDELRAMAIFAETIKQGSFRAAAKELKLSPSVVSYQVTQLEKSVGTALIYRSTRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L++    +    +    ++     +  G L +     L ++ +   + +F  L+P
Sbjct: 61  SEGGVLYQYALNMIQAAQQGLNQVAIEKQELRGTLTLTLPSALIKSEISKKISQFSKLHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +  +L   +   D+     D A R    +  S+L  +++  I+     +  Y K    P
Sbjct: 121 FLNFKLFYTDDRQDLIHQGIDLAFRAGS-MDDSNLKSKRVGEINRKLVCSYDYWKENIPP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +S Q+L   N I   D++P      N          E  IS   VN+  ++ Q C+ G+G
Sbjct: 180 ISPQDLTTWNWIKL-DMLPNHRTLVNSAGEKCDIDFESNIS---VNNVEAMTQLCINGAG 235

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           IA  PDY+++       LV ++ +    S  +Y  +P  +     +K    F+ 
Sbjct: 236 IATPPDYLIEKEIENNALVELLPNWQVESIPLYAVWPSNVFQNSSVKRLLEFLI 289


>gi|157372669|ref|YP_001480658.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157324433|gb|ABV43530.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 305

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 130/299 (43%), Gaps = 6/299 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A SGSF+ A  +L +S +++ + ++ LE+ VG++LF R+ R LTLTE+G 
Sbjct: 2   LGHLECFVSSAESGSFSAAGRKLGISSAAVGKNVTKLESLVGVRLFQRNTRKLTLTEEGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +  S     ++     L  S    +G L+++     G + +   L +FL  YP I  
Sbjct: 62  RFLQEVSGGLLSIQCALKSLSSSGGVAAGTLKVSMGTAFGLHFVLPMLPDFLARYPSIVP 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
               DN+ +D+  ++ D A  +   I+ +  +I R+L   H    A+  YL+        
Sbjct: 122 DWHFDNRQVDLIGEHFDAA--MGGGIELAQGMIARELAPAHGVLVASTQYLQQYPSLQQP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  I         + +       +          + VN   +  +   +G GIAL
Sbjct: 180 EQLVSHAGIFIRSPQTGRVRNLPLRNADNEQRAPSMTIKMTVNEPEAAARAAEMGLGIAL 239

Query: 244 --LPDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
             +P+ +   ++  LVR++        +V+  +P       K + F ++I  + R  K 
Sbjct: 240 ISMPNALPYLESGRLVRVLPGWYVDRGSVHLYFPTTKFLPTKTRVFVDYITEQFRLQKL 298


>gi|327189522|gb|EGE56677.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 317

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 10/301 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F WD L+ F  VAR+G  + AA QL  S +++SR+I  LE  + +KLF R+ RG  LT 
Sbjct: 6   QFTWDDLQFFLAVARTGQLSTAARQLRSSHATVSRRIDRLEFTLKVKLFERNPRGYVLTA 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +  + E  + +L + S+   G +R++             L  F   +P 
Sbjct: 66  MGTRFVETAERMEQETERLRADLADGSMAQRGLVRLSAPEGFANFFFATVLHRFAARHPH 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+   + + +S   AD ++ L +P +       KL   H+  Y +  YL       
Sbjct: 126 LALELVTIQQIMSLSRKEADLSVVLDEP-KGGPYFAEKLTDYHLQIYGSRDYLAKAPAIT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
              +L +H  +++ + +       ++L+ V      PRI    Q +S  + +     G G
Sbjct: 185 CRDDLLEHPFVSYIEEMIFA-PGLDYLSDV-----HPRIKPQFQSSSIFAQLTATRNGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR--DWK 298
           + +LP +     P LVR++   I      +      LK   +++A  +F+    R  D +
Sbjct: 239 LCILPYFFASRYPELVRVLPAEIDLKRQYWITCHRDLKQAPRVRAVIDFLREAVRGEDAR 298

Query: 299 F 299
           F
Sbjct: 299 F 299


>gi|83646889|ref|YP_435324.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634932|gb|ABC30899.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 300

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 143/305 (46%), Gaps = 16/305 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  V ++ SF+  A    +  SS++RQI  LE E+G +L +R  R + LTE
Sbjct: 1   MDKLKALRFFEHVGKAASFSDTARHFDIPVSSVTRQIQALEEELGARLLHRTTRVVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +  S++   L+     +     +PSG LRI+ +   G++ +   L EF  LYP+
Sbjct: 61  IGEIYLQHCSQILRSLDNADELIVNYRSRPSGVLRISCSSSYGESRILPILSEFEALYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I + L +K +DI  D  D A+R  + I    ++ + +   +    A+  YL+    PL
Sbjct: 121 IIIDIDLTDKVVDIMRDSVDIAVRAGQ-IPDERVVAKHIDDNNFSLAASDAYLQRYGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            I++L +H  I F        +  +W A ++    +  I   L  +S   + Q+   G G
Sbjct: 180 RIEDLSEHRAIFF----RTSDQVLHWQANINGRWRQVDIRPALITSSPRLLRQWAGEGKG 235

Query: 241 IALLPDYIVKDN--PNLVRIME-DVIT-----PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +A++P+++ + N  P   RI+E D            +Y  Y        K+KA  +F+  
Sbjct: 236 LAMMPNWVWRSNSLPAGFRILELDYPLYVSRATQLGIYLLYQRPKYAVPKVKAAVDFLVS 295

Query: 293 K-ARD 296
           + ARD
Sbjct: 296 RLARD 300


>gi|114705384|ref|ZP_01438292.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Fulvimarina pelagi HTCC2506]
 gi|114540169|gb|EAU43289.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Fulvimarina pelagi HTCC2506]
          Length = 299

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/288 (21%), Positives = 135/288 (46%), Gaps = 5/288 (1%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +  F+ AA +   S++ +S+ +  LE E+G+ L  R  R + LT  G    
Sbjct: 1   MRAFMAVVENEGFSAAARKTGRSKALLSKYVRELEDEIGVLLINRTTRQVALTAAGEVYM 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++ + +E+     +E++ +  G +R++     G   L  +L +F + +PDI + + 
Sbjct: 61  TRAGQLLNDIESLNDAAREATGEAKGMIRVSAARTFGDAHLGHSLVDFAVDHPDISLDIH 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LD+  +D+  +  D AIR+ + +  S+LI R+L ++     A+P  LK   +P    ++ 
Sbjct: 121 LDDGFVDLVNEGFDVAIRMTR-LADSALIARRLASLDFCIVASPELLKRLGKPSHPSQVT 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            + ++   +        F    T  + +          NS +++    + G G+AL P +
Sbjct: 180 NYPVVIDSNARIFTSWQFRDPET-GQSLPVQVSGQFTANSPVTVRAAALAGLGLALSPSF 238

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +VK++     LV++ E+ +     +Y  +P       +++ F +++  
Sbjct: 239 VVKNDVREGRLVKLFEEYMESEAGIYAVFPHRRHLPARVRLFVDYLAA 286


>gi|330010623|ref|ZP_08306849.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328534448|gb|EGF61043.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 310

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 125/296 (42%), Gaps = 12/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D+  L++F  V  + SF+  A +  +S S ISR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   SVDFRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  +    Q  LQ+ +  P G +RI   +  GQ  +   L E    +P 
Sbjct: 66  AGRFFAASARELLGQYADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELAARHPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q  L+L +  ID   D  D   R+   +  +    R   +   +  A+P Y+     P 
Sbjct: 126 LQFDLMLTDDFIDPHRDATDILFRISS-LPDAGYHARVFGSQRYYLTASPEYVSRYGSPT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L +H  + +G         F         +  P    +  N+  +++   + G GI
Sbjct: 185 SPEALHQHRTLVYGGSQGANRWLFRQREEA--WVHYPLTPLMTSNNADALLTSAIGGVGI 242

Query: 242 ALLPDYIVK---DNPNLVRIMEDV-----ITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD++V     N  LV +M+        TPS+ +   YP     +  ++   ++
Sbjct: 243 VLFPDWMVSGALHNGTLVTLMDRYSAAISHTPSY-IAAIYPYTRHPSLNVRTVIDY 297


>gi|293611088|ref|ZP_06693387.1| transcriptional regulator [Acinetobacter sp. SH024]
 gi|292826740|gb|EFF85106.1| transcriptional regulator [Acinetobacter sp. SH024]
          Length = 298

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 131/297 (44%), Gaps = 10/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + + +F V      F+ AA+QL+L +S+IS++++ LE ++G+ L +R +R   L+E G
Sbjct: 6   NLNDVYLFVVAVEHQGFSAAAKQLNLPKSTISKRVAILENKLGLTLIHRSSRSFVLSESG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++       +    +  L     +PSG +R++ ++ + Q LL   L E    YP + 
Sbjct: 66  KLFYQHAKNAVDEFRYAEENLLIQQQEPSGVVRLSASVPIAQYLLSDCLPELAERYPKLL 125

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+ + ++ +D+  +  D  IR   +P+  S LIQR L    + A AA  YLK      +
Sbjct: 126 LQVEVTDRYVDVMSENFDIVIRSHFQPLPDSGLIQRVLKNDKIIAVAASTYLKKTAPIHT 185

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            ++L KH  +     + P   ++ N    + RP           N    +      G GI
Sbjct: 186 PEDLLKHEGLWPELQMNPWHFQNINGQKEIVRPNI-----RFVANESEILKGAAKRGLGI 240

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LLP+    +     +L+ ++ D    S T              +    +F+  K +
Sbjct: 241 TLLPETFCMNELSEGSLIHVLPDWSAGSVTTSLLMLTRRGLLPSVNITADFLVEKLK 297


>gi|254472630|ref|ZP_05086029.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211958094|gb|EEA93295.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 300

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 4/295 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      L VF  +A++GS   AA  L +  S++S Q+  LE ++G  LF R  R +TLT
Sbjct: 1   MRLPLAMLEVFNAIAQNGSLRGAANALGIKPSTVSHQLKSLEEQLGTALFVRTTRSVTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L       +  L     + +E      G LR+     +    L   L  F   YP
Sbjct: 61  DAGRALQSGAGAAFDLLGQAVEDAKEYGSSARGSLRLTLPEFVFHTFLADLLPGFQAKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ++  L +  +DI  +      R    +    +  R      +    +  YL     P
Sbjct: 121 EIQLEFSLSDAIVDIVSEGLHAGFRTGSLVAQDMIALRISDPQPLTVLGSKTYLDQHGRP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H  I +       +  + +    DR   + +   L +N+  S ++    G G
Sbjct: 181 EKPEDLLDHACIQYRFQTSGQLAPWVFQVDGDRVEIDVK-GGLVLNTLPSQLELMEQGMG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +AL   Y      D   + R++ED + P   +Y  YP   K+   L+ F + I  
Sbjct: 240 LALTFRYYALMQCDETKVERLLEDYLDPVAPLYLFYPREYKDLQPLRLFIDHIKA 294


>gi|114800444|ref|YP_759844.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114740618|gb|ABI78743.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 326

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 139/293 (47%), Gaps = 8/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DWD LRVF VVA   S + AA +L  S  +ISR+I  LET +G +LF R  RG+ LTE
Sbjct: 5   RLDWDTLRVFRVVAELSSMSGAAARLGESPPTISRKIDDLETTIGAQLFVRSTRGVELTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  + R   ++     T + E         G++ I+T   +G   L   L EF  + P 
Sbjct: 65  AGKVVLRYAHQMAEAANTLRDEAGAQRAPVEGRITISTGDGIGPYWLAPRLHEFQDMNPR 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI++I+++   D++   AD AI   +P +S  L+  +L   H   +A+  Y +  + P 
Sbjct: 125 IQIRMIVNDDPADVTNGDADIAIHFSEP-KSHELLTHRLGVQHYIGFASKDYFRERKPPE 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ E  K+  +     + +       ++ + R I          NS  +++Q C  G G+
Sbjct: 184 SLFEYYKYRCLMHSSYVNQVERWAPKVSELRRMID----YAFVSNSGTALIQSCAAGGGV 239

Query: 242 ALLPDYIVKDNPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+LP +I   +  L+ + + ++       +  Y E  +   + + F ++I  +
Sbjct: 240 AILPSFIAAMDNRLIPLDLPEIA--PIQFWVAYTERFRRRPEGQPFVDWIRKR 290


>gi|15964478|ref|NP_384831.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307308421|ref|ZP_07588125.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307318984|ref|ZP_07598415.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15073655|emb|CAC45297.1| Probable HTH-type transcriptional regulator, LysR family
           [Sinorhizobium meliloti 1021]
 gi|306895398|gb|EFN26153.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306901024|gb|EFN31632.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 293

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 131/290 (45%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +RVF  VAR+G    A+++L ++ +++SR+++ LE E+  KL  R   G  LT +
Sbjct: 1   MNWDDVRVFLAVARTGQILAASKRLGINHATLSRRVTALEEELKAKLLIRRPNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q ++       +G +RI      G + L   L      YP++
Sbjct: 61  GEVFFAAAERMETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLTARYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL+   +   +S   AD AI + +P +   L+  KL    +  YA+  YL     P +
Sbjct: 121 KLQLVPVPRSFSLSQREADIAITIERP-EQGRLVSSKLTDYTLGLYASAEYLGRYGTPGT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H  I + + +      F         +     +  +++S +   +     +GI 
Sbjct: 180 VDDLKNHRRIGYVEDL-----IFTPSLNFSTEVMRSWDASFEISSAMGQTEAVRSSAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +L +YI +  P LVR++ D  T     +  Y E+ ++  +++    F+  
Sbjct: 235 ILHNYIARQYPELVRLLPD-RTIRRAYWTTYHESARDLVRVRTVAAFLQE 283


>gi|226951355|ref|ZP_03821819.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226837877|gb|EEH70260.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 309

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA  L ++ S++S+QI  LE E+ + L +R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARDLGITTSAVSQQIRSLEQEMDVTLLHRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  +I + E      G LRIATT +LG   +   L  ++  +  
Sbjct: 62  AGQAFFLSCQEMLAAAERGKIRINELRDDLVGDLRIATTPELGALHVVPALSHWMSAHKG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +    D++ ID+  +  D AIR+   +    L    L  +     A+P YL       
Sbjct: 122 LAVHFEADHRYIDLISERIDIAIRMSLKVDDPQLTVVPLARVDQILVASPSYLNQSPPIT 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L  H L+     + +  + F +   +    +     + L  N+       C  G G
Sbjct: 182 RPEDLIHHELL--PVTLMQNFQHFTFRHGLSGENVNVEMQTRLGTNNVFVAKSLCQQGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +    V+    + +LV ++ D   P++T+     +  +   K+    + +
Sbjct: 240 IARILYMDVQKELVSGSLVEVLPDWQLPTYTLQALTSKREQYPVKVHRCIDAL 292


>gi|332284927|ref|YP_004416838.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428880|gb|AEC20214.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 306

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 139/289 (48%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTE 61
            DWD LR F  VAR+   + AA +L +  S++SR+I  LE E+G  LF +    G TLTE
Sbjct: 2   LDWDGLRYFLEVARTQRVSAAALRLGVRHSTVSRRIHALELELGTLLFDKSKSTGFTLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G++      ++   L T + E+   S   SG LR+ +T   G  +L   + +F   +P 
Sbjct: 62  EGNRFFAYAEQIEGTLITAREEISGQSQTLSGHLRVGSTEGFGNYVLAPLMTDFQRRFPA 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + I +S   AD AI L +P +   L   KL+   +  Y +  Y+  C   L
Sbjct: 122 ITLDIMPVPRFISLSKREADIAISLERPQRGPYLCT-KLLDYSLKLYGSTEYIARCAPIL 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I + + +       + L  +D  +   R+   +  S ++     + G  +
Sbjct: 181 KKTDLAEHTFIGYVEELLFS----DRLRYLDDIVANSRV-IFKSTSVIAQYHAALQGESL 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP ++   +P L  ++ D I  + + +    E L+++ ++ A  +F+
Sbjct: 236 AILPCFMAAQDPRLQAVLNDEIVVTRSFWMYCHEDLRHSRRVMALWDFL 284


>gi|323526725|ref|YP_004228878.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323383727|gb|ADX55818.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 302

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 135/298 (45%), Gaps = 9/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA +L +S++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDVNSLTLLVEILDAGNLSEAARRLKMSRANVSYHLNQLERSVGLQLVRRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + + L   +  +        G++R++     GQ ++   L EF   YP I
Sbjct: 61  GLQLYEHGRAIQNALLAARESVATLGQSLQGRVRLSVPSGYGQLVMSEWLIEFKRRYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R + ++   A A+  +  +   P+ 
Sbjct: 121 VLDVLFENRVEDLMRDEVDIAVRIMSE-PPQNLVARDMGSVRYVACASRSFADSHGMPVQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    LIT   +  +              + EP    +   ++L + Q  + G G+ 
Sbjct: 180 LDDLRTAPLITAAVVGRQLRVAAYLRDERHEVLLEP---TIISENFLFLRQAVLAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++PDY+V D+    ++V  +++     F   +Y  Y     +T     F  FI  +AR
Sbjct: 237 IVPDYVVHDDLKRGDVVTTLDEWRLSIFGTNMYMLYMPNRHHTRAAATFIEFILEQAR 294


>gi|134292989|ref|YP_001116725.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|161521336|ref|YP_001584763.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352498|ref|YP_001948125.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|134136146|gb|ABO57260.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
 gi|160345386|gb|ABX18471.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336520|dbj|BAG45589.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 297

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 119/302 (39%), Gaps = 22/302 (7%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  +AR GSFT AA  L ++QS++S+ I  +E  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLAFVTIAREGSFTRAAATLGVTQSALSQTIRAMEESLQIRLLSRTTRSVSPTPAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +       +++     L E   KP+G +RI     +  ++L   L   L  YP+I+
Sbjct: 65  ERLLQAIGHRLDEIDAELDALTELREKPAGTVRITCGDYMLHSILLPKLAPMLQEYPEIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  ++    DI  D  D  +RL   I    +       + M    +P Y  N   P   
Sbjct: 125 LEFDVNYGFRDIVADRFDAGVRLGSTIDKDMIAVPIGPALRMAVVGSPAYFANRPIPKKP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCV------ 236
           Q+L  HN I     +P     + W           R+   L  N+    +   +      
Sbjct: 185 QDLMHHNCI--NQRMPTSGGLYVWDFERRGQKLNVRVDGQLIFNTTQPQVDAALGGLGLT 242

Query: 237 -----LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                      L+P  +   +  LVR++ED        +  YP   + +       + + 
Sbjct: 243 LLPEDE-----LMPHIV---SGRLVRVLEDWCPRFDGYHLYYPSRRQPSPAFSMVLDALR 294

Query: 292 LK 293
           ++
Sbjct: 295 IR 296


>gi|254524649|ref|ZP_05136704.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219722240|gb|EED40765.1| transcriptional regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 305

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 140/291 (48%), Gaps = 10/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L VF  V  +G F+ AA  L ++ S++S+ ++ LE  +G +L  R  R L LT +G   
Sbjct: 11  ELEVFVRVIETGGFSAAARTLDMTPSAVSKLVARLEQRLGTRLLQRSTRQLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V   L+  +     +  +P G+LR+ + +  GQ+ L   L  FL   P + + L
Sbjct: 71  YERGLRVLADLDEAER-CASAHAEPRGRLRVNSNVPFGQHFLLPLLPAFLERNPQVGVDL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L+++ ID+     D A+R   P++SSSL+ R+L    M   AAP Y +    P S++EL
Sbjct: 130 TLNDEVIDLLEQRTDVAVRAG-PLKSSSLVARRLGATRMMIVAAPTYAQRHGLPASVEEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN +  G    + M+ +  L      +  P  +  + ++  ++ Q  + G G+A L  
Sbjct: 189 QAHNRLDIGHA--RAMQGWPLLQDGRERMLLPSGNA-RASNGDALRQLVLGGLGMARLAA 245

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFIFL 292
           + V+ +     L+ ++E+        V+  +  +      +++AF +++  
Sbjct: 246 FQVQADITAGRLLPVLEEANPGDLEEVHAVFLGQGGYLPLRVRAFLDYLVE 296


>gi|86358282|ref|YP_470174.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282384|gb|ABC91447.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 291

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 123/272 (45%), Gaps = 8/272 (2%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           + LS+S+  + ++ LE  +G +L  R  R L+LT++G   +    ++   ++  +  +  
Sbjct: 1   MGLSRSAAGKAVTRLEERLGARLLNRTTRTLSLTDEGRVFYDHGLQILTSVDEAEASIAG 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
            S  P G LR+A     G  +    L ++L  +PD+Q+++ L ++  ++  +  D AI  
Sbjct: 61  QSGVPRGVLRLAVPDVFGPLVGLPLLDKYLRTWPDVQVEVSLTDRPAELLDNGFDVAIGF 120

Query: 147 RKPI--QSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
                   S LI R + +  +   A+P YL     P  I +L  H+ + F     +    
Sbjct: 121 GATPSAADSRLITRVIGSDKVLLCASPSYLAERGVPREIADLAAHDCLFFTSRGQRQAWR 180

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F    +    I     S L+++S  ++    + G GIALLPD+++  +     L +++ D
Sbjct: 181 FR---SGGGWIKAQGRSRLRLDSGQAVRDAALAGLGIALLPDFLIAADLTAGRLRQVLPD 237

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + T    +   Y +      +++ F + +  +
Sbjct: 238 LETDDTKIVALYSDKGVLEPRVRCFIDLLLEE 269


>gi|114562790|ref|YP_750303.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334083|gb|ABI71465.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 294

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 128/297 (43%), Gaps = 14/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  V  +GSFT AA   ++  SS+SR+++ LE  +G  L  R  R + LTE G   +
Sbjct: 1   MRYFSKVVETGSFTKAASAFNVPPSSLSRRVADLEKSLGATLLKRSTRIVKLTEVGQIYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++ ++L  +   ++     P G+LRI++ +  G  +L   L EF  LYP I + + 
Sbjct: 61  NDVQQILNQLAQSHETVRSYQTTPMGRLRISSMVGFGDKILLPLLDEFSTLYPQIVLDVS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++   +  D  D AIR      +  ++  +L+       A+P Y++    P +  EL 
Sbjct: 121 FSDELSTLGRDDVDIAIR-GGYAPNERVLAIRLMDNGFIPVASPSYIEKHGIPNNAMELT 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPD 246
           +HN + F            WL  ++    +     + + N+   + +    G GI +   
Sbjct: 180 QHNGLYFKAPTGPT----PWLCNMNGQWHDVSGPAVAISNNGPWLAKKACNGEGILMSTR 235

Query: 247 YIVK---DNPNLVRI-----MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + +    ++  LV +     +         VY  Y +      K+KA  +F+  + +
Sbjct: 236 WALASYLESGKLVELKFEHELAITQHSDMAVYLLYQKQRYLVPKVKAAVDFLVERIK 292


>gi|170728840|ref|YP_001762866.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169814187|gb|ACA88771.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 309

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 9/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +++++F  V   GSFT AA+ + L+++++SR+++ LE + G++L +R  R L LT+ 
Sbjct: 1   MDLNRVQMFAQVVEQGSFTAAAKVMGLTKATVSRKVAELEADAGVQLLFRTTRALKLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  +     +   L++ + +L  +     G L I   I+LGQ  L     +FL  YPDI
Sbjct: 61  GNAYYNRVHRILADLQSAEDQLSSNQQMVKGNLNIVCPIELGQLFLGRVFAQFLTHYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I   L N+++D+  +  D   ++   +   SL   +++       A+P YL     P  
Sbjct: 121 TIDAELTNRNVDVVAEGVDVLFQITS-MSDPSLQTYEMINTDKMLMASPSYLARNGTPKV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            Q+L KH  I     +     D +W L      + +   + L VN+     +  + G GI
Sbjct: 180 PQDLSKHKAI----KLKSTHIDGSWTLFDGKEWVTQEPEAQLTVNNVTLAREAAIEGLGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++P  I +       L+ ++ED       +    P+      K + F  +I
Sbjct: 236 TIVPTLIAQQALDEKLLLPLLEDYPLAQTKITMSTPQRAYLPRKYQVFIEYI 287


>gi|134288225|ref|YP_001110388.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134132875|gb|ABO59585.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 318

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 121/300 (40%), Gaps = 15/300 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH---ARGLTLTE 61
            + LR F   AR  SF+ AA +LH++ +++ + +  LE  +G  LF+R       L  TE
Sbjct: 7   LNALRAFEASARHQSFSAAAVELHVTPAAVGQLVRTLEEWLGAPLFHRSASGRVRLVPTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + +L       +      +G L +A +       L   ++ F   +PD
Sbjct: 67  AAERALPDIRAGFDRL--AIGFERLKEGSINGVLTVAVSPAFAAKWLLPRIERFQTAWPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L  + K +D      D  +R         L  +KL+   ++    P   +      
Sbjct: 125 TDVRLDTNLKPVDFVAQGIDIGVRYGTG-NWPGLASQKLMDEEVYPVCTPKLRREHPGLR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYCVLG 238
           +  +L +  LI   DL       F    T  R +G   +S    L++N+  +++Q  + G
Sbjct: 184 NPADLRRVTLIH--DLSMDSHTGFPTWDTWLRKVGFTDVSTKRGLKINNSAAVLQAAIEG 241

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL    +  D+     LVR+  DV  T     Y    +      KL AFR+++  +A
Sbjct: 242 HGVALARSVMAHDDLAAGRLVRLFPDVAFTSPLAYYVVVRDECACLPKLTAFRDWLLEEA 301


>gi|83748060|ref|ZP_00945089.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83725246|gb|EAP72395.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 324

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 115/296 (38%), Gaps = 6/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR+   +A +G+ + AA QL    ++ S  +  +E E+G +LF R  R +  TE G 
Sbjct: 4   LDDLRLLVRIADAGNLSAAARQLGWLPATASAALKRVEGELGARLFERTTRSMRPTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      +    L+     L +     +G +RIA T DLG+NLL+  L  F   +P +++
Sbjct: 64  RYLGHARQALEALDEGAESLGQDRTALAGPIRIAATSDLGRNLLRPWLDAFCDEHPGVRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L ++  D+  +  D  +R    +Q S+L++R L +       AP Y +    P    
Sbjct: 124 TLVLGDRLADLMREDIDFGLRYGH-LQDSALVRRPLASHPRVIVGAPSYFRRHGRPAHPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H  +               L     P         Q +    +  + + G G+A  
Sbjct: 183 ALREHRCLILLRSGEPVTRW--QLTHAGGPAPVDVRGDFQCDDGAVLRDWAIAGRGLAFK 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               V  +     L  ++         +            +L A  +F+  +   +
Sbjct: 241 AWLDVAQDVYAGRLEVVLPAWAHAPTPLQLVSLARRHRPTRLTACADFLAARFARF 296


>gi|115359127|ref|YP_776265.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284415|gb|ABI89931.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 301

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 129/297 (43%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDRLDGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +  GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALSELEAAEADLDCGRNEARGKLRLSVPLAFGHHCVMPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D AIR+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDLVEEGIDLAIRIGTLADSTSLAVRRLGTQYGSLGAAPSYLARYGMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H  I +        + ++  A     +       L  +   +I      G G
Sbjct: 181 QSLDDLRNHRTIAYSR--SGVAQPWDLRAPDGSTVRVDMQHQLSFDDVQAIAAAGAAGFG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP +++        +V +++        ++  +P+      K +   + +    
Sbjct: 239 IAWLPSWLLDHYVKRGEMVVVLDRCFVCEGDIHAIWPKTRYLPRKTRCVIDALVQAV 295


>gi|299532615|ref|ZP_07046004.1| LysR family transcriptional regulator [Comamonas testosteroni S44]
 gi|298719418|gb|EFI60386.1| LysR family transcriptional regulator [Comamonas testosteroni S44]
          Length = 287

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 136/298 (45%), Gaps = 16/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR+F   AR  S T AA++LH++Q+++S+ I  LE  +G  LF R  RGL LT
Sbjct: 1   MQLPLNALRMFDAAARHQSLTRAAQELHVTQAAVSQHIRNLEERLGKPLFRRLPRGLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L  V ++ + ++E +  ++ E   +P   L +          L   L +F  L+P
Sbjct: 61  DEGQALWPVVAQSFERIEQSLQQVAE--PRPREILTVGVVGTFAIGWLIPRLSQFQQLHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L+ +N  +D++ +  D A+R        +   + L+   +     P   +  REP
Sbjct: 119 YIDLRLLTNNNRVDLAGEGLDAAVRFGDGAWHGT-HAQMLLRAPLSPMCTPMLAQQLREP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +  L+       +  E   W A +D+    P       +S L++ +    G+G
Sbjct: 178 ---ADLARQTLL----RSYRTQEWEGWFAGLDQAA--PLARGAMFDSSLTLAEAAAQGAG 228

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IALLP  + +       LVR        +   +  Y ++ + +  L+ FR ++  + +
Sbjct: 229 IALLPARMFEHMLQQGRLVRPFA-HEVDTGAYWLTYLKSRQASAALQTFRQWLMTQLQ 285


>gi|240949769|ref|ZP_04754101.1| putative transcriptional regulator [Actinobacillus minor NM305]
 gi|240295801|gb|EER46488.1| putative transcriptional regulator [Actinobacillus minor NM305]
          Length = 297

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 126/285 (44%), Gaps = 8/285 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +D+  + +F +V   GS   AAE+L ++ S++++ +  LE ++ IKL  R  R L+LTE 
Sbjct: 2   YDFKSMSIFVMVVEQGSMQAAAEKLQMTPSAVTQSLQKLEQQLKIKLLNRTTRKLSLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++   ++    E     ++     P G L I+       + L   LKE +  +   
Sbjct: 62  GEVFYQHVRQMQKNAENAVKCVEVLRSDPIGWLNISCPSGFMDSKLLDVLKEIIENHLGF 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +   +K++D+  +  D A+R+       ++I R +  +         YL   + P S
Sbjct: 122 SLNISFSDKNVDLLEEQVDIALRVGTGALHDTMIARHIYDVQFAILGQKDYLSKQKLPDS 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L   + I F  L P  +E    L   D+ I       ++ NS L+     + G GI+
Sbjct: 182 PEGLSTLDWIHFSPLAPSEIE----LYQQDKKIKVLPNYRVKTNSLLASRCLTMKGFGIS 237

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           L P   + +      LV++  +   PS  +Y    + ++ + K++
Sbjct: 238 LQPLVDLDNELHSKELVKLFPEWHLPSSPLYLVTLQRIQ-SEKVR 281


>gi|209516657|ref|ZP_03265510.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209502932|gb|EEA02935.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 302

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA +L +S++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDVNSLTLLVDILDAGNLSEAARRLKMSRANVSYHLNQLERSVGLQLVRRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + + L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRTIRNALIAARESVTTLGQSLQGRVRLSVPSGYGQLVMSDWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P + +    P +
Sbjct: 121 VLDVMFENRVEDLMRDEIDIAVRVMSE-PPQNLVARDMGPVRYVACASPEFARTHGMPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    LIT   +  +              + EP    +   ++L + Q  + G G+ 
Sbjct: 180 LDDLRAAPLITAAVIGRQLRLAAYLRDERHEVLLEP---TIISENFLFLRQAVLAGLGVG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+PDY+V+D+     ++  +     ++     Y  Y     +T     F +F+  + R
Sbjct: 237 LVPDYVVQDDQKRGAVLTALDAWRLSIFGTHMYMLYMPNRHHTRAAATFIDFMLEQVR 294


>gi|146307158|ref|YP_001187623.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575359|gb|ABP84891.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 331

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 133/299 (44%), Gaps = 17/299 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE  +G  LF R    + +T  G  
Sbjct: 19  DQLELFLDVLETGSFSAAARRHPLTPSAVARRIDALERALGSSLFSRSTHAVRVTPAGLA 78

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL   P + +Q
Sbjct: 79  FAERARRILAELHLARAEAVSLSSAPEGLIRIDAPSPFGRRHLAPAIADFLRANPGLDVQ 138

Query: 126 LILDNKDIDISMD---YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +   D+  +     D  +R+  P+  S L+   L ++     A+P YL+    P S
Sbjct: 139 LRLIDSFTDLQGEHLGEVDIVVRIG-PLPDSRLVATPLASMTRIVCASPDYLRRRGIPRS 197

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSG 240
             EL++H+ + +  L P     + W   VD  +   +P+      N+  +++   + G G
Sbjct: 198 PLELEQHDGLDWDSLAP----PYAWRFEVDGKLQLCKPKRLRQTSNNAETLLFSALAGLG 253

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A LP ++  ++     L+ +  +   P     ++Y    E  + + + +   +F+  +
Sbjct: 254 VAHLPTWMSSEHLQRGELIPLFCEQGLPAAEPVSIYALRLE-REASPRTRLLLSFLKQR 311


>gi|317491238|ref|ZP_07949674.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920785|gb|EFV42108.1| LysR substrate binding domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 297

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 139/299 (46%), Gaps = 13/299 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS   D  R    F   A + SF+ AA QL +S +++S+ +  LET + ++LF R+   +
Sbjct: 1   MSLPTDVYRLIPAFLASADAQSFSAAARQLGISAAAVSKNVRVLETRLNMRLFARNTHFV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE+G +  +  + V+  L     + +    +PSG +R++     G++ L   +  F  
Sbjct: 61  VLTEEGRQFRQRIAPVWQALNQAL-DNRSPYEEPSGLVRVSVIPGFGRHRLMPLIPVFQQ 119

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P ++I L ++ + +++  +  D AI  ++    S LI R+L +   +  A+P+YL   
Sbjct: 120 RFPQVRIDLEMEPRLVNLIAENIDVAIG-QRTATDSRLIGRELGSASSNMAASPNYLARF 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P ++ +L  H  +   +  P   +   W    D        +     S  +++   + 
Sbjct: 179 GIPQTLGDLASHRRLLHRN--PGNGKLLCW--WDDETSVSEEQAAFISTSPDTLVDAALC 234

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             GI  L D+ ++++     L+ I++       +++  YP A     +++A+ +F+  +
Sbjct: 235 DMGIVCLADWYLEEHFRNERLIPILKPFWPRPRSMHIWYPSAD-LPPRVRAWVDFVLAQ 292


>gi|221069188|ref|ZP_03545293.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220714211|gb|EED69579.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 326

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 131/298 (43%), Gaps = 13/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VAR  +F  AA++L L+QS++SRQI  LE EVGI LF RH+R + LT  G++L
Sbjct: 21  HLRAFLAVARHLNFRAAADELALTQSAVSRQIQSLEDEVGIPLFLRHSRAVELTGAGAQL 80

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     ++ T  +++++  +    + I T        L   L+ F   +PDI I++
Sbjct: 81  LHAAQPALESIDATVRQIRQTVGRK--SVAITTWASFAAMWLIPRLEAFQRAHPDIDIRI 138

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+     D AIR    +  +S   + L    +   A+P  L++     S  + 
Sbjct: 139 DTGDAVVDLETTDVDLAIRYSAGVSDAS--AKALFGEELVLVASPTLLRSGPAVRSPADA 196

Query: 187 DKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             + LI  GD+      + +    W A       +P    L  N    I+Q  + G G+A
Sbjct: 197 AHYTLIETGDVHRMPQLEWLSWQRWFAANGCDQLQPP-RWLYFNYAHQIVQAALAGQGLA 255

Query: 243 LLPDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +    +V D     +L+ ++ +       + +           +++AF  ++  +AR 
Sbjct: 256 IARLPLVADALAAGSLIEVLPEHRLASPLSYWLLQGPRSSERPEVQAFCQWLMEQARQ 313


>gi|73541173|ref|YP_295693.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72118586|gb|AAZ60849.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 304

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 128/296 (43%), Gaps = 9/296 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V  SG FT AA +L LS +++S  +  LE  +G++L  R  R ++LTE G + +
Sbjct: 7   LTAFVRVVESGGFTAAARRLDLSTTTVSNHVQALEDSLGVRLLNRTTRHVSLTEIGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +  +L           V P G+LR+     L    +   +  FL  YP++ +   
Sbjct: 67  ERCSHILQELAEADEITSALQVTPRGRLRLRCHQSLD-RFIAPVVTRFLGNYPEVSLDFE 125

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  ID   +  D +I    P   S+LI+R L   H     AP YL+    P S  +L 
Sbjct: 126 -TDVMIDPVREGFDLSIMPASP-PDSTLIRRTLAKWHYLLCCAPAYLETHSVPHSPADLV 183

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN + +   I +   +F+++     P+       +   S   +      G G+ L P +
Sbjct: 184 DHNCLLYAYSIFRN--EFHFVDPAGNPMSTRVSGNMVTASITVMRAAAAAGLGLWLCPPF 241

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDWKF 299
           +V D   +  LV ++ D  T    +   YP   + + K++   + +  + A + ++
Sbjct: 242 LVSDLLASGALVPLLPDYRTQELEIVALYPHRRQVSTKVRLLLDMLVDRFAEEQRW 297


>gi|254512192|ref|ZP_05124259.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
 gi|221535903|gb|EEE38891.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           KLH11]
          Length = 297

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 12/292 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++ F  VA++GS + AA  L  SQ ++ RQ+  LE E+G+ LF RHARGLTL+E G
Sbjct: 9   DWSLIQSFLAVAQTGSLSAAARMLGRSQPTLGRQVHALEEELGVSLFDRHARGLTLSEVG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++  +  ++Y  +    +     + +  G +RI  ++ +  +LL   L       P IQ
Sbjct: 69  QQVLPMAQQMYAAVNALSLTAAGQAQQLEGSVRITASVFVSHHLLPPILAAIRRAEPAIQ 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+  +   ++    AD A+R+ +P Q   ++ + +  + +   AA  YL+    P S 
Sbjct: 129 LDLVASDASENLLFREADIAVRMYRPEQVD-IVAKHIGEVPLCFCAARSYLERAGRPASP 187

Query: 184 QELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            EL +H+L+ F   + I   M +  W A+ +           + ++  +  +    G GI
Sbjct: 188 SELMQHDLVGFDANEEIINAMRNKGWPASRE-------SFATRCDNQTTYWELIRAGCGI 240

Query: 242 ALLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 I + +P  V ++E D   P   ++   P+A++ T +++   + +  
Sbjct: 241 GFSQLGIAQADPA-VEVLEIDAEIPVLPIWLAAPQAMRQTPRIRRVWDLLAE 291


>gi|16263562|ref|NP_436355.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|14524265|gb|AAK65767.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
          Length = 297

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L+ F  VA +G  + AA +L +S+S +SR++  +E E+G++L  R  RG  LTE 
Sbjct: 1   MDIEDLQTFVAVADAGGVSAAARRLGISKSIVSRRLLRVEAELGVQLLARTTRGAALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       +    +++T + E    + +  G+LR+A  +  G       L +    +P +
Sbjct: 61  GITFRDHAARASAEIDTAK-ETILPTGELRGRLRVAMPLTFGPTHFAPVLADMARQHPQL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I     ++ +D+  +  DCAIR    +Q S+LI +++  IH    A+P Y+K    P +
Sbjct: 120 HIHTSYSDRFVDLIAEGFDCAIR-GAYLQDSNLIAKRVGPIHGKLVASPDYIKAHGSPGT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL  H  +  G    + M+        D+ +        + +S  ++      G GIA
Sbjct: 179 LDELVTHQALMQGTEAWQFMDG-------DKIVTVQPQGRFKADSATALAAAAAAGLGIA 231

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD I      +  LV IM     P    Y   P     T K++A    +  
Sbjct: 232 WLPDCITYGYVASGALVPIMTRYPVPPGAAYVVRPPGQHPTRKVRALTEMLTE 284


>gi|118472966|ref|YP_886349.1| LysR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174253|gb|ABK75149.1| transcriptional regulator, LysR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 310

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 139/294 (47%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  +A +G+ T AA    +S S +SR++  LE  +G  L +R ARGL LT +G
Sbjct: 3   DVGDLEFFVTLAAAGTMTEAARHWGVSVSVVSRRLKALEERLGTPLVHRRARGLELTAEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + H   SE+  +L+  +  L       +G +R+ +T+ LG+  +   L +F   +  ++
Sbjct: 63  QQYHVRGSEILQQLKDLESTLNPDPKDLTGSIRVISTVGLGRVHIAPLLHDFRRRHRSVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +  S+   D AI++ + ++ SSL  R+L+       A+P YL     P  +
Sbjct: 123 ISLELTSLPLSASVPGFDIAIQVGR-VRDSSLAIRQLLPNRRVVVASPDYLDAHGAPADL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H L+   +   + +  F       R    P    L  N  +++ ++C+ G+G+A+
Sbjct: 182 DDLKNHELLVVRENEGESIWRF---VKDGRETAIPVRGGLICNDGIAVTEWCLAGAGLAM 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + V        LV ++ DV TP   V   +   ++ + +++   +F+  + 
Sbjct: 239 RSIWHVAPYVREGRLVHVLPDVETPEADVVALFDAGVRTSPRVRTLLSFLRKQL 292


>gi|170703010|ref|ZP_02893841.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170132086|gb|EDT00583.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 303

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL+  P+
Sbjct: 61  EGAAFLERCRGLLSEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLVDKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 MQLSFNLTDRVVDLVREGYDLSIRIGGSV-DPNFVAVKLASNRRVVCGTPDYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L KHN + F     +  ++  W       I   R++  L  N    + ++     G
Sbjct: 180 SLDDLLKHNCLAFNL---QGGQNRGWYFQRHGKIVTMRVAGNLDCNDGELLHRWVAESLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     + +    +   L  ++++   P + +   YP+      +++ F +++   
Sbjct: 237 LGWRSTWEIAAQLETGELETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYLREA 292


>gi|254252200|ref|ZP_04945518.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124894809|gb|EAY68689.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 303

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL   P+
Sbjct: 61  EGAAFLERCRGLLSEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLADKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 MQLSFNLTDRVVDLVREGYDLSIRIGGAV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L KHN + F     +  ++  W       I   R++  L  N    + ++     G
Sbjct: 180 SLDDLLKHNCLAFNL---QGGQNRGWYFQRHGKIVTMRVTGNLDCNDGELLHRWVTESLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + +    +   L  +++D   P + +   YP+      +++ F +++
Sbjct: 237 LGWRSTWEIAAQLETGELETVLDDYALPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|109896604|ref|YP_659859.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109698885|gb|ABG38805.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 294

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 128/292 (43%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +  ++L  F  +  +     AA  L++S +++S ++S LE  +G  L +R +R +  + +
Sbjct: 2   YTINELETFIAIVENKGVVSAASALNISPATVSHRLSKLERILGTVLIFRDSRNVRPSAE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++   ++   L   +  +       SG+LR+     +    +  NL +F   YPD+
Sbjct: 62  GEEFYQRVGDILAALYDAEFAIGARDSAISGRLRVTLPPWIFSIYILPNLVKFEQQYPDV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  ++ ++ +++  D  D AIR+   + +S L+ RK+V       A+PHYL        
Sbjct: 122 ILDFLVTDQFVNVVDDAQDVAIRVG-TLANSGLLARKIVNNKRILCASPHYLAQHPPISD 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +Q L +H  +          +    L            +   +++  ++ Q    G GI 
Sbjct: 181 VQALTEHRFVALP-----WQKQLKLLHNDGSVFALNTKTRFTISNSDNMTQALRAGHGIG 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +  +K       LV ++ +V+  P   V+F  P+    T K +AF  F+
Sbjct: 236 IKSEIAIKRCIQEGKLVEVLPNVLASPEAPVWFLRPQNSLATRKAEAFFEFV 287


>gi|307295586|ref|ZP_07575422.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878625|gb|EFN09845.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 319

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 128/297 (43%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF   AR  +FT AA++L ++Q+++S Q+  LE  +GI LF R  R + LT++G 
Sbjct: 20  LSAVRVFEAAARLENFTAAAQELGMTQAAVSYQVKLLEERLGISLFQRAGRKVALTDRGR 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               + + V    +  +      +   S  L I+         L   +  F + +P + +
Sbjct: 80  ---EIATVVSRAFDQMREGFAALTQDHSTVLTISCMNSFAHLWLAPRIGTFQMRHPGLAV 136

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   N+ +D + D  D A+R  + I    +  + L    +    +P +L          
Sbjct: 137 RIDATNRVVDFARDGVDVAVRGGEGIW-PGVEAKLLTHNRIAPVCSPGWLAKNGPIA--- 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             D H L     L P  +    W A V     G+     + ++S     +  + G G+A+
Sbjct: 193 --DAHALHAMPRLSPDDLWWHEWFAGVGVEADGKGLRPAIALDSQAMEGRAAMAGQGVAI 250

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           +  ++ K   +   LV  +   +    + +  YP   +N  K+KAFR++I  + AR+
Sbjct: 251 VNPFLWKAEMEAGLLVEAVPSYVRERASYWVAYPPHARNAPKVKAFRDWIGAEFARE 307


>gi|294011462|ref|YP_003544922.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292674792|dbj|BAI96310.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 337

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 130/297 (43%), Gaps = 14/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF   AR  +FT AA++L ++Q+++S Q+  LE  +GI LF R  R + LT++G 
Sbjct: 38  LSAVRVFEAAARLENFTAAAQELGMTQAAVSYQVKLLEERLGISLFQRAGRKVALTDRGR 97

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               + + V    +  +      +      L I+ T       L   +  F +  P + +
Sbjct: 98  ---EIATVVSRAFDQMREGFAALTQDHMTILTISCTNSFAHLWLAQRIGTFQMRQPGLAV 154

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D++ D  D A+R  +  +   L  + L    +    +P +L         Q
Sbjct: 155 RIDATDRVVDLARDGVDVAVRGGRG-EWPGLEAKLLTHNRLAPLCSPAWLAANGPIADAQ 213

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            L          L P  M    W A +     G+     + ++S +   +  + G G+A+
Sbjct: 214 ALHALP-----RLSPDDMWWHEWFAAMGVEADGKGLPPAIALDSQVMEGRAAMAGQGVAI 268

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           +  ++ K   +   LV  +   +    + +  YP  ++NT K+KAFR++I  + AR+
Sbjct: 269 VNPFLWKAEVEAGLLVEAVPSYVRERASYWVVYPPHVRNTAKVKAFRDWIGAEFARE 325


>gi|260776145|ref|ZP_05885040.1| regulatory protein LysR:LysR substrate-binding [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607368|gb|EEX33633.1| regulatory protein LysR:LysR substrate-binding [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 265

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 118/270 (43%), Gaps = 9/270 (3%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
            IS+ IS LE  +  +L +R  R  TLTE G   ++    +   L   +  +Q     P 
Sbjct: 1   MISKHISHLENHLATQLIHRTTRKQTLTESGQLYYKECQRILEDLANAENLIQTLENSPK 60

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G ++I   +  G  +L   + +FL  +P+I +++ L N+ ID  +  AD  IR+   ++ 
Sbjct: 61  GVVKINCPVTYGNKVLAPLIADFLAQHPNINVEMELSNELIDPHLTDADMMIRIGN-LED 119

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
           S+L+ R L    +   A+P YL       S+ +L +H  + F           +    + 
Sbjct: 120 SALVARYLGDYTLIFCASPAYLAANAPIESVSDLTQHQCLGFSYSEGSA----SITTQIA 175

Query: 213 RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTV 269
                   + L  N+   +    + G+G+ L P  +V+D+     LV I++  +     +
Sbjct: 176 SSAFLRGQTRLASNNGEVLRSAALSGAGVMLQPTILVEDDLANGRLVEILKQDVPAPKPI 235

Query: 270 YFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +  Y ++ + + K + F +FI    R  + 
Sbjct: 236 HLLY-KSKRLSLKNRTFADFILNNCRQGQL 264


>gi|300692783|ref|YP_003753778.1| transcriptional regulator, lysR-family [Ralstonia solanacearum
           PSI07]
 gi|299079843|emb|CBJ52520.1| transcriptional regulator, LysR-family [Ralstonia solanacearum
           PSI07]
          Length = 310

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/284 (25%), Positives = 124/284 (43%), Gaps = 6/284 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA + SF  AA QL ++ S ++ ++  LE  +   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVAETHSFAEAARQLGVTNSVVTHRVQQLERYIEAPLFHRSTRHVRLSEVGETYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +     L     +++     P+GKLRI        +     L  F   YPDIQ+ ++
Sbjct: 67  KQCAHAVAMLSDLTDQMRGLRATPAGKLRIRMLPGYALHHFARPLARFSAQYPDIQLDVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+  +D   +  D   ++  PI  S LI+++L  +     A P Y++    P    +L 
Sbjct: 127 VDDSVVDPIAEGFDVVFQIFPPINDS-LIEKRLFILRRMFCATPDYVEEYGVPRQPADLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H L  +     +    F+    V   +  P    ++ NS   +  Y + G+GIA LP  
Sbjct: 186 RHALALYSGYPTRRHWVFSRNGEVAAELDLP--EQVRSNSVHLLRDYALTGAGIACLPTL 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +V D+     LV ++ D     F     YP   +   K+ A  +
Sbjct: 244 VVSDDLLAGRLVPVLPDYDLAPFHFAAVYPATQRQAVKVCALID 287


>gi|53719089|ref|YP_108075.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76810404|ref|YP_333818.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126441922|ref|YP_001059293.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126453911|ref|YP_001066562.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134277445|ref|ZP_01764160.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167738188|ref|ZP_02410962.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167815374|ref|ZP_02447054.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167823783|ref|ZP_02455254.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167845325|ref|ZP_02470833.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167902320|ref|ZP_02489525.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910560|ref|ZP_02497651.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|217421759|ref|ZP_03453263.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226197246|ref|ZP_03792823.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812619|ref|YP_002897070.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242317872|ref|ZP_04816888.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254179486|ref|ZP_04886085.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254189124|ref|ZP_04895635.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254259551|ref|ZP_04950605.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254297367|ref|ZP_04964820.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52209503|emb|CAH35455.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|76579857|gb|ABA49332.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|126221415|gb|ABN84921.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126227553|gb|ABN91093.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|134251095|gb|EBA51174.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|157806890|gb|EDO84060.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157936803|gb|EDO92473.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|184210026|gb|EDU07069.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217395501|gb|EEC35519.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225930625|gb|EEH26635.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237503879|gb|ACQ96197.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|242141111|gb|EES27513.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254218240|gb|EET07624.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 303

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 108/267 (40%), Gaps = 8/267 (2%)

Query: 28  HLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQES 87
            +S   + R+I  LE  +G+KL YR  R L ++E G+        +  +    + E+   
Sbjct: 27  GVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSEDGAAFLERCRGLLTEWAQAENEVVAG 86

Query: 88  SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLR 147
                G L ++     G+  +      F+   PD+Q+   L ++ +D+  +  D +IR+ 
Sbjct: 87  RRAVGGHLIVSAPAAFGRKHVAPLAPAFVADKPDLQMSFNLTDRVVDLVREGYDLSIRIG 146

Query: 148 KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNW 207
             +   + +  KL +        P Y +    P ++ +L  HN + F     +  ++  W
Sbjct: 147 GAV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPRTLDDLASHNCLAFNL---QGGQNRGW 202

Query: 208 LATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVI 263
               +  +   R+S  L  N    + ++   G G+     + +        L  ++++  
Sbjct: 203 YFRRNGKLVTMRVSGTLDCNDGELLHRWVSEGLGLGWRSTWEIAQQLARGELETVLDEYA 262

Query: 264 TPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P + +   YP+      +++ F +++
Sbjct: 263 LPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|114769922|ref|ZP_01447532.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114549627|gb|EAU52509.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
          Length = 295

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 122/282 (43%), Gaps = 8/282 (2%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79
            + AA    +S +  S +IS LET +G++LF R  R L+ TEQG   +R    +   ++ 
Sbjct: 1   MSAAARDQRISPAVASARISQLETHLGVRLFQRTTRSLSPTEQGQIFYRGARVILESVQM 60

Query: 80  TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139
            + ++ + +  P G L +A  + +G++L+  N   F   YP + ++L L ++ +D++ + 
Sbjct: 61  AEADIGDVTENPRGVLHVAAPLGVGRSLIAPNSPAFTSKYPLVDLRLRLSDRKVDLTAEG 120

Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK--HNLITFGDL 197
            D A  L  P   S+L  RK+        A+P Y+     P+   EL +  HN +     
Sbjct: 121 LDIAFFLGHP-TDSNLRIRKIADCPRVLCASPEYIAKNGHPVDGFELQRGKHNCLML--R 177

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PN 254
            P   E    L T D          L+ +    +  + + G+GIA+ P + V D+     
Sbjct: 178 FPGSTEFQWELNTPDGLRKFDVKGRLESDDGDVLTDWALAGAGIAMKPVFEVYDHLKSGK 237

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L+ + E        +   Y        K + F  F+     D
Sbjct: 238 LIIVAEKTRPSHVQMACLYTHRRHQDPKARLFMEFMIEHISD 279


>gi|92112514|ref|YP_572442.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91795604|gb|ABE57743.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 327

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 124/299 (41%), Gaps = 8/299 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F + A  GSF  AA+ L L+ +++S+QI  LE+ +G  LF RH R + LT  G 
Sbjct: 8   LGALHCFEMAAHHGSFARAAKALTLTPAAVSQQIRQLESRLGTTLFLRHPRSVELTPAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +    T+      +      +        +L IATT       L   L +F   YPD+++
Sbjct: 68  EY--ATAIGLALDQIAVATERVVGHHAPHRLTIATTPAFAAKWLVSRLIDFQGRYPDLEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N   D++    D AIR  +  +   L    L+   +    +P  L      + + 
Sbjct: 126 RLVTSNSLADMARQDIDVAIRYGQG-RWPGLEATPLMHTDLFPVCSPALLARGPSLIRLS 184

Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H L+    D  P  +     L   +   GE R      ++ L I Q  + G G+AL
Sbjct: 185 DLREHVLLRLMHDEWPTWLRHMGILEGEELETGEWRPGPRYADAGLMI-QAALAGQGVAL 243

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
               +V D+     LVR  E  +  + + +           K++AF+ ++      W+ 
Sbjct: 244 GQRVLVADDLAAKRLVRPFEATLPSAQSYWLVMQPGNAGLPKVRAFQAWLDEAVSTWRL 302


>gi|262171581|ref|ZP_06039259.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|261892657|gb|EEY38643.1| transcriptional regulator [Vibrio mimicus MB-451]
          Length = 311

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 134/295 (45%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S   D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R ++ L LT
Sbjct: 10  LSMKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRSSKELVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L    +E++ ++E  Q +++++     G++ I+  +   ++ L     EF  L+P
Sbjct: 70  KEGEQLFHTYAELFAEIERKQDQVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFSELHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ ++L + +     +    D A+R   P   S  + RKL        A+          
Sbjct: 130 NVTLRLQVGSGLDYFTQRDLDIALRFG-PQPESDWVARKLARNPSVLCAS-APFAASLSL 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              Q+L+ + L++    +P            D+ +     + L  +   +I+Q  + G G
Sbjct: 188 SHPQQLNHYPLLSLNHKLPWIFHS----KESDQKVQFIPSARLSSDELDTIVQATLQGMG 243

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IA LP  ++    D+  LV ++ +       VY  +P+      + +A  +++  
Sbjct: 244 IARLPRGLMAPLLDDGQLVELLPEWEIEGADVYLLHPQRRFLPERTQALIDYMIA 298


>gi|241205245|ref|YP_002976341.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859135|gb|ACS56802.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 295

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 116/292 (39%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   AR  SF+ AA++L+++  +ISR I  LE ++ ++LF R  R + LT  G 
Sbjct: 8   LNALPSFEAAARHLSFSRAADELNVTHGAISRAIKHLEEQLDVQLFERGTRSVRLTAIGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   E    L         S+      L ++ +       L   L  F     DI +
Sbjct: 68  PYAQSVREALDLLAAAT--KSASARHLDKTLNVSASDGFAGRWLVPRLYRFHQANRDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++    +      D  D AIR     +   L    L    +    +P  L+      +  
Sbjct: 126 RISTTGRLTTFLADGIDIAIRYGGG-EYPGLTSEFLTGEEVFPVCSPRLLEGAHPLRAPG 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI  G  I    +   WL + D    +P+ S L  +S    ++  V G G+ L 
Sbjct: 185 DLKHHTLIHDGFPI----DWATWLRSADVRDVDPK-SGLTFDSATFAVESAVQGEGVVLG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              +V  +     LVR     +T +   +  YP    +  K+KAFR+++  +
Sbjct: 240 RTMLVAADLAAGRLVRPFRLALTSASQYFVVYPPRAIHQRKVKAFRDWLLAE 291


>gi|190572834|ref|YP_001970679.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190010756|emb|CAQ44365.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 305

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 126/290 (43%), Gaps = 5/290 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F   A +GSFT AAE+LHL+ S++ + I+ LE  +G +LF R  R L LTE G 
Sbjct: 7   LRGIEAFVATADAGSFTAAAERLHLTSSAVGKTIARLEARLGARLFERSTRRLRLTEAGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R    V  +L   +  L   +  P G+LR+      G+  +   L +    +P +  
Sbjct: 67  GFYRTCVRVLGELADAESVLVSHADAPVGRLRVDAPATFGRLKVWPLLLQLAAEFPQLHP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           Q+   ++  D++ D  D A+R+  P    ++L  R L    +   A+P YL    +P S 
Sbjct: 127 QVTFSDRFSDLAEDGVDLAVRIGGPEPLPATLGSRLLGYECLRFCASPAYLLRHGQPRSA 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+ + FG      +  +       R       + L V S  + +     G GIA 
Sbjct: 187 AELAGHDGVLFG-RADGSIGPWQVADGRQRSTPLQARARLVVGSAEAQVAAVEAGFGIAQ 245

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L  ++V D     +LV I+  +      +   +P+  +   ++    + +
Sbjct: 246 LATWLVDDALARGSLVSILPSLDCRGLPLRLLWPQGRQRLPRVDVALDRL 295


>gi|33602709|ref|NP_890269.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33577151|emb|CAE35708.1| probable LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 306

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 123/289 (42%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR-GLTLTE 61
            DWD LR F  VAR+   + AA +L +  ++++R++  LE E+   LF +    G  LTE
Sbjct: 2   LDWDSLRYFLEVARTQRVSAAARKLGVEHTTVARRVRALEAELDSLLFEKSRSAGYVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   + T +  L       SG +RI  T   G  +L     +F   YP 
Sbjct: 62  DGQRLFVFAEQMESTVHTARENLSGIGQALSGHVRIGATEGFGSYVLTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    +  KL    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCTKLCDYTLMLYGTPAYLARHAPIR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  HN I + D +      F+        +       L+  S ++     + G  +
Sbjct: 181 ERADLAGHNFIGYVDEL-----LFSERLRYLEDVLPNSQVVLRSTSVIAQYHAALQGQSL 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I   +P L  ++ D I  + + +    E L+   ++ A   F+
Sbjct: 236 AILPCFIAAQDPRLTPVLPDDIAITRSFWMYCHEDLRRLKRVSALWEFM 284


>gi|293394156|ref|ZP_06638456.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291423134|gb|EFE96363.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 307

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 125/298 (41%), Gaps = 4/298 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A  GSF+ A  +L +S +++ + I+ LE +V ++LF R+ R L LTE+G 
Sbjct: 2   LGHLECFVSSAELGSFSAAGRKLGISPAAVGKNITKLEAQVRVRLFQRNTRKLILTEEGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        ++     L  +    +G L+++     G + +   L  FL  YP I  
Sbjct: 62  RFLQEVKGGLLSIQCALKGLSSAGGVAAGTLKVSMGTAFGLHFMLPMLPGFLARYPAIIP 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
               DN+ +DI  +  D A+     + +  +I R+L   H    A+  YL+        +
Sbjct: 122 DWHFDNRQVDIIGEQFDAALGGGFEL-AQGMIARELAPAHGVLVASADYLRRQPALQHPE 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243
           +L +H  I         + +       +          + VN   +  Q   +G GIAL 
Sbjct: 181 QLAEHAGIFIRSPQTGRIRNLPLRNPDNEQRPAAMQVAMTVNEPAAAAQAAEMGMGIALI 240

Query: 244 -LPDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            +P+ +   ++ +LVR++ +      +V   +P       K + F ++I  + R  + 
Sbjct: 241 AMPNALPYLESGHLVRVLPEWYVDRGSVRLYFPSLKFLPTKTRVFVDYIIEQFRTQQL 298


>gi|316933355|ref|YP_004108337.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315601069|gb|ADU43604.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           DX-1]
          Length = 315

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 138/290 (47%), Gaps = 7/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + +DW+ +  F  VAR  S   AA +L +  +++SR++  LE  +   LF R   G TLT
Sbjct: 8   IRYDWNDVVYFLEVARQRSLVRAAAKLKVDHTTVSRRVRELERSLNSTLFKRSKSGFTLT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L +    +  +  +    +   +    G +RIA    +G   L   + +F  +YP
Sbjct: 68  EIGMRLLQYAEGMESQANSIVEAIGTDTADAGGAVRIAAMEGIGSFYLTRCIVDFNKIYP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ++LI D + +D+S   AD  +   +P Q   L  +K+    +  YA   Y      P
Sbjct: 128 SIQVELITDTRLLDLSRREADIFVSFFRP-QGKRLSIKKVGEFRISLYATDAYFAGRSPP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL+ H  I F +      E+  WL+ V R    P  +  +  S ++       G G
Sbjct: 187 TTVKELESHAFIDFIEDHIYSQEN-RWLSDVLR----PPHTIFRSTSLVAQSIAVSAGQG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA+LP Y+   +P L+ +M ++ T +  ++    E L +  ++KA  +F+
Sbjct: 242 IAMLPSYVASGHPELLPVMPELFT-TRDIWLSVHEDLLHVARIKAVISFL 290


>gi|221200825|ref|ZP_03573866.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
 gi|221207021|ref|ZP_03580032.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221173095|gb|EEE05531.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2]
 gi|221179397|gb|EEE11803.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD2M]
          Length = 315

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 138/295 (46%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDTGSITAAAQQLDLTVSAASRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQDARAIIESVENAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D A R+ + ++ S+L  R++ +  +   A+P Y++    P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAFRIGR-LKDSTLHSRRIGSSRLRMLASPAYIEAHGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L +H L+ F    P+ +  +  L     P        +  +S  ++ Q  + G+G
Sbjct: 180 RTVEDLGRHTLLGFTQ--PESLNIWPILGADGEPQRIE--PAIWSSSGETLRQLALDGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIF 291
           I  L D++    +D   LV+++          +   Y      + ++ +F +++ 
Sbjct: 236 IVCLSDFMTAHDRDAGRLVQVLGRQTLDVQQPINAVYYRNTAISSRIASFVDYLV 290


>gi|184156353|ref|YP_001844692.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|239503938|ref|ZP_04663248.1| transcriptional regulator [Acinetobacter baumannii AB900]
 gi|260558063|ref|ZP_05830274.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|332873277|ref|ZP_08441232.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183207947|gb|ACC55345.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|193078389|gb|ABO13361.2| putative transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
 gi|260408417|gb|EEX01724.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|322506222|gb|ADX01676.1| transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323516098|gb|ADX90479.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332738483|gb|EGJ69355.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 297

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 121/294 (41%), Gaps = 11/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +A+ G+ T AAE L+ S++ +SR +  LE     +LF R+ R ++LT 
Sbjct: 1   MDTLKAIQVFVSIAQHGNLTKAAEHLNYSRAMVSRYLEHLEHTFSTRLFQRNTRKISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K       +  + +  Q     +  + +G +R    + L +  +   +++F   +P 
Sbjct: 61  AGEKALLYCENILQQQQLLQEL--AAPEQHNGTIRFTCGLFLFELGVAECIRQFKRQHPH 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ  + L    +D+     D A+R+ + +    LI R +  I     A P YLK     L
Sbjct: 119 IQFDVYLTESTMDLIDAQVDLALRITQKVAD-GLIARPVCQIESVFCAHPDYLKQHSPLL 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  I          + +       +P   P     + N   ++   C+   G+
Sbjct: 178 HPRQLIQHECIAHHS----QHQFWTLFDNEQQPQNYPLNVTFKSNDVNALYDMCLHAQGV 233

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP  +V+ +     L  + ++   P  ++   Y          + F  F+  
Sbjct: 234 AMLPTLLVEKDLKEKRLKALFKNFTAPELSLSVVYASRQHLPRITQEFIAFMIE 287


>gi|108762593|ref|YP_634288.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108466473|gb|ABF91658.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622]
          Length = 302

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 122/299 (40%), Gaps = 13/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F   AR  SF+ AA +LH++ +++ + +  LE  +G  LF+R   G   L LTE
Sbjct: 7   LNALRAFEASARHESFSAAATELHVTPAAVGQLVRSLEEALGTPLFHRGTSGRKRLVLTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + +L      L+E    P G L +  +       L   L+ F   +P+
Sbjct: 67  AAQRALPDIRAGFERLSVGVARLKE--GSPVGVLTVTVSPAFAAKWLLPRLERFQSAWPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L      +D +    D  +R         L+  KL+   ++   +P  L+  R   
Sbjct: 125 LDVRLDASIDLLDFAARGVDIGVRYGAG-DWPGLVSEKLLDEEVYPVCSPVLLRQGRRLR 183

Query: 182 SIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              +L    LI    +  +        WL        E +   L++N+  +++Q  + G 
Sbjct: 184 RPSDLGGVRLIHDRSVDSRAGFATWDAWLEKAGVKDVETKRG-LRINNSAAVLQAAIDGQ 242

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL    +  D+     LVR+  +V  PS    Y  Y        KL AFR ++  +A
Sbjct: 243 GVALARSIMAHDDLAAGRLVRLFPEVEFPSRLAYYVVYRPECATLAKLVAFREWLVREA 301


>gi|51243144|gb|AAT99360.1| putative LysR-type regulator [Sphingomonas sp. tfd44]
          Length = 299

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 122/272 (44%), Gaps = 11/272 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++ R+F  V  + S   A   L +S S +S++++ LE  +G +L  R  R L+LTE+G++
Sbjct: 4   NEYRLFAAVVDAASLAGAGRALGISPSMVSKRLAALEERLGTRLVNRTTRRLSLTERGAR 63

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H   + +   +   +  + + +  PSG LR++     G+  +  +LK FL  +PDI++ 
Sbjct: 64  FHDEVTAILASMREAERRVSDRTDHPSGPLRLSLPTSFGRLHVVPHLKAFLDTWPDIELT 123

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + +   D+  +  D AIR+   I  S L    L        AAP YL+    P SI +
Sbjct: 124 LDMSDGLRDLFAERIDVAIRITAAIT-SGLTAHHLAPSRRLLCAAPSYLEAYGAPRSIAD 182

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+     +P  ++  +       P      S +  NS  ++ +  + G GIAL  
Sbjct: 183 LGHHRLLAATGQLPWQLDGPS------GPRIVRGRSAVNTNSSEAVRELALAGVGIALRS 236

Query: 246 DYIVKDNPN---LVRIMEDVITP-SFTVYFCY 273
            + V        L+ ++          +Y  Y
Sbjct: 237 IWDVGTELRERELIPVLPAYQGSLETGIYAVY 268


>gi|17544962|ref|NP_518364.1| transcriptional regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17427252|emb|CAD13771.1| putative pca transcription factor pcaq; transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 310

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 123/284 (43%), Gaps = 6/284 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA + SF  AA QL ++ S ++ ++  LE  +   LF+R  R + L+E G   +
Sbjct: 7   IEAFVRVAETRSFAEAARQLGVTNSVVTHRVQQLERFIEAPLFHRSTRHVRLSEVGETYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  +     L     +++     P+GKLRI        +     L  F   YPD+Q+ ++
Sbjct: 67  KQCAHAVGMLSDLTDQMRGLRATPAGKLRIRMLPGYALHHFAQPLARFGAQYPDLQLDVV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +D+  +D   +  D   ++  PI  S LI+++L  +     A P Y++    P    +L 
Sbjct: 127 VDDGVVDPIAEGFDVVFQIFPPINDS-LIEKRLFILRRLFCATPDYVEEYGMPQQPADLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H L  +     +    F+    V   +  P    ++ NS   +  Y + G+GIA LP  
Sbjct: 186 RHALALYSGYPTRKHWVFSRSGEVAAELDLP--EQVRSNSVHLLRDYALTGAGIACLPTL 243

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +  D+     LV ++ D     F     YP   +   K+ A  +
Sbjct: 244 VASDDLLAGRLVPVLPDYDLAPFHFSAVYPATQRQAVKVCALID 287


>gi|260564958|ref|ZP_05835443.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M]
 gi|265990199|ref|ZP_06102756.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|260152601|gb|EEW87694.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M]
 gi|263000868|gb|EEZ13558.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
          Length = 304

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 127/297 (42%), Gaps = 10/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L+
Sbjct: 1   MIPDIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G K       + ++ E T +    S+   S     AT    G   L   + +F+  +P
Sbjct: 61  DAGRKFLPEVRRLLNQTEDTMLRAMASAQSTSSSSI-ATLPTFGTRWLMPRILDFVEKHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + +   +   D      D AI   +P+ + +     L +  +   A+P  LK  R P
Sbjct: 120 GIALNVASRSGVFDFEEQPFDLAIHYGQPVWAHA-TCTFLCSEVIVPVASPSLLKTRR-P 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL+   L+    L  +      W  +     G+      +   +  ++   + G G
Sbjct: 178 ASPEELENEPLLH---LATRPKMWAQWFESCGVE-GQSAYRGHRFEQFSMVIGAALAGLG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ALLP Y+++    +  LV + E  +      Y   PE        + F  +I  + 
Sbjct: 234 FALLPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEGKLENPLTQVFCQWIAGQV 290


>gi|222084933|ref|YP_002543462.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722381|gb|ACM25537.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 293

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 131/290 (45%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +R+F  VAR+G    A+++L ++ +++SR+++ LE  +  +L  R   G  LT +
Sbjct: 1   MDWDDVRMFLAVARTGQILAASKRLGVNHATLSRRVTTLEERLKTRLLVRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  +       +G +RI      G + L   L   +  YP++
Sbjct: 61  GEIFLHAAERMETEMLRAQASVGHLDSAITGTVRIGAPDGFGVSFLAPRLGRLIARYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P +   L+  KL    +  YA+  YL     P S
Sbjct: 121 RIQLVPVPRSFSLSQREADIAITLERP-EQGRLVSSKLTDYTLGLYASKAYLDKAGLPDS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L  H  I + + +      F         I     +  ++++ +   +    G+GI 
Sbjct: 180 VEALKLHPRIGYVEDL-----LFTASLNFSGEIMRSWDASFEISTSIGQTEAVRSGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +L DYI +  P L RI+ D+       +  Y E+ ++  +++   +F+  
Sbjct: 235 ILHDYIARQYPELTRILPDISI-KRAYWTTYHESARDLVRVRTVADFLQE 283


>gi|260466991|ref|ZP_05813172.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029191|gb|EEW30486.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 305

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 132/292 (45%), Gaps = 9/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + ++L  F  V  +GSFT A ++L ++++ +S QI  LE E+G  L  R  R +T TE+
Sbjct: 5   LNLNRLVYFTTVMETGSFTVAGDRLGVAKAVVSHQIGKLEEELGATLMRRTTRRITPTEE 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +   + +  + E    E+   +V+P+G LR+   +D G  ++   +  +L  YP +
Sbjct: 65  GRLFYDRATIILREAEAAYGEISHGAVEPAGMLRLTAPLDYGAKVVAPVMAAYLKTYPQM 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++ I D+   ++  +  D  IR+   +  SS   R+L TI     A+P +  +    + 
Sbjct: 125 RVEAIFDDAVSNLVDEQIDLGIRVGW-LADSSNQARRLGTIRQIVVASPAFAASLPSDVG 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +      +    L         WL + D       +   +  +   + +   + G G+
Sbjct: 184 PHQARSLAWVGNAQLRGIG----QWLFSRDGETVLTELNPVIMCDKSPAALACVLAGIGL 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + PDY V D+     LV +  D   P+  ++  +P A     K++AF + +
Sbjct: 240 GIFPDYSVDDDIAEGRLVPVFADWTLPTGGIHAVFPPARFRPAKVRAFVDLL 291


>gi|293392983|ref|ZP_06637300.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291424517|gb|EFE97729.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 314

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 132/293 (45%), Gaps = 6/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R+F  +   GSF+ AAE+L L ++++S  +  LE  +G++L  R  R + +T 
Sbjct: 1   MDQIQAMRIFTRIVELGSFSRAAERLQLPRATVSNTLKRLEQRLGVRLLIRTTRQVNVTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  ++   ++   LE       +  ++PSGK+RI     L + ++   L +F   YP 
Sbjct: 61  EGTLYYQRCIQLLGALEEADTLFSQQKLQPSGKVRIDMPHSLAREIVIPALGDFYQRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L  ++  +D+  +  DC +R  +  +  SLI R++  +     A+P YL++   P 
Sbjct: 121 ITLALGANDSHVDLLREGVDCVLRAWE-TEDDSLIARQITAMPQLTCASPAYLQHYGVPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           SI +L  H+ + +  L         +       + E   S L V+   + +  C  G G+
Sbjct: 180 SIDDLHHHHAVGYFSLATNRDYPLEFCRHGKLELRE-LPSRLSVSGADAYISGCRAGLGL 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
                Y +       +LV ++     P   +Y  YP       +++   +++ 
Sbjct: 239 IQAARYSLSPWLKRGDLVEVLAQTPPPPMPIYIMYPPGRFLAPRVRVLIDWLI 291


>gi|87118762|ref|ZP_01074661.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86166396|gb|EAQ67662.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 294

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + +F  + +      AA +L +  ++++R++  LE  V  +L +R AR   LT +G 
Sbjct: 2   LDDIVLFIHIVQQQGLAPAARELDMPVATVTRRLQRLENSVRCRLIHRTARRFELTSEGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R  S +  + E TQ  L        G L++   I+L    LQ     F+  +PDIQ+
Sbjct: 62  IYFRAYSHLVDQFEQTQQSLSGELNDMRGSLKVMAPINLSAGFLQPMWSGFIQAFPDIQL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+  D+  + AD AIR+  P   S+  Q++L  +     A+P YL    EP ++ 
Sbjct: 122 ELSLSNQLEDMLAEKADLAIRVG-PQPDSAFYQKRLGEVATMLVASPDYLTKFGEPKNLA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI    ++   ++        ++    P +S L VN       +   G GI+LL
Sbjct: 181 DLSHHKLIASQAIMSWTLQKPG---GQEKTSLSPALSTL-VNDVNIAASFVRDGLGISLL 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V+D      +VR++ D       +Y  +P       + K    +I
Sbjct: 237 PTTEVQDYLNTGEMVRVLADWQGLDRVIYAVWPSGRLMNVRAKRLLAYI 285


>gi|289676526|ref|ZP_06497416.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
          Length = 252

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 1/246 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF +VA  GSFT AAE+L+L+ S+IS+ I+ LE  +  +LF R  R L+LTE G 
Sbjct: 7   LKGIDVFVIVADMGSFTAAAERLNLTNSAISKSIARLEGRLRTRLFQRTTRRLSLTEAGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  + V   LE  +I L  +  +P GK+RI      G+  +   + +F+  +P +Q 
Sbjct: 67  TFYRTCTTVLSDLEEVEIALTSTQTEPQGKVRIDLPASYGRLHVLPLILDFMKQHPRLQP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPLSI 183
            +   ++ +D   +  D  +R+       + I  +   T  +   A+P Y+    +P ++
Sbjct: 127 HVSFSDRYVDPVHEGIDIVVRIGGSDAWPAAIAHQFFGTQKLIFCASPEYVNQYGQPRTV 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +LD H  I +G      +  +                 + V      +   + G GIA 
Sbjct: 187 SDLDAHQCIGYGQNDGMAIPWYFKGRQPGDMERRIMHPHIAVGDGEGEVMAVLAGLGIAQ 246

Query: 244 LPDYIV 249
           LP ++V
Sbjct: 247 LPTWLV 252


>gi|303247390|ref|ZP_07333663.1| transcriptional regulator, LysR family [Desulfovibrio
           fructosovorans JJ]
 gi|302491304|gb|EFL51193.1| transcriptional regulator, LysR family [Desulfovibrio
           fructosovorans JJ]
          Length = 295

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 128/290 (44%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L +   VAR  SF+ AAE L +S S++SR+I  LE  +G+ LFYR  R + LT+ GS
Sbjct: 5   LTDLPLLAAVARQRSFSKAAEILGMSASTLSRRIKLLEERMGVLLFYRDTRNVKLTDTGS 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +  + +     +  +  KPSG +R+    D+ +  ++G L +F   +PDI++
Sbjct: 65  VLIERCEFILDEAQKAYDSVVTNMRKPSGLVRVCMFRDMYEEHMRGMLLDFATRWPDIRM 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L      +D+ +D  D A  +   I    L+ RKL+TI    YA+P   K+   P+  +
Sbjct: 125 DLTFAEHSVDLRIDPYDVAFLIGPSIAPP-LVARKLLTIEPFLYASPELFKHHPMPVEPK 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +   I       +       +   +R +          +S      + + G GIALL
Sbjct: 184 DLHRLPCIVLERFGRRWP-----MHNGNRQVIVDIEPKYTFSSVEMCRDFALAGHGIALL 238

Query: 245 PDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
            D +   +     LVR++          VY       +   +++ F + I
Sbjct: 239 RDLLAAPDETAGRLVRVLPQWSGGFEHDVYMVTGPG-QLPQRVRLFVDHI 287


>gi|115351865|ref|YP_773704.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|171321480|ref|ZP_02910424.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|115281853|gb|ABI87370.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
 gi|171093246|gb|EDT38450.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 303

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL+  P+
Sbjct: 61  EGAAFLERCRGLLSEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLVDKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 MQLSFNLTDRVVDLVREGYDLSIRIGGSV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L KHN + F     +  ++  W       I   R++  L  N    + ++     G
Sbjct: 180 SLDDLLKHNCLAFNL---QGGQNRGWYFQRHGKIVTMRVTGNLDCNDGELLHRWVAESLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +     + +    +   L  ++++   P + +   YP+      +++ F +++   
Sbjct: 237 LGWRSTWEIAAQLETGELETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYLREA 292


>gi|107099025|ref|ZP_01362943.1| hypothetical protein PaerPA_01000033 [Pseudomonas aeruginosa PACS2]
          Length = 304

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 117/298 (39%), Gaps = 6/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D LRVF   AR  SFT AAE+L  +Q ++S+QI  LE E+   LF R  RG+ LT
Sbjct: 6   MPPSLDLLRVFESAARQLSFTAAAEELGTTQPAVSQQIKRLEKELATPLFQRVHRGIVLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L R  +     ++     L          L++AT        L   L  F   +P
Sbjct: 66  DAGQLLLRHVAAGLETIDAGIAALGARQRHE--VLQVATDYAFAAYWLMPRLPRFHQAHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+   + +       D AI              +L    +    +P  ++  + P
Sbjct: 124 HLDVSLVTSERGLAGQRGDIDVAILFGDGRSKHG-EAHRLFREEVFPVCSPRLVEGLQLP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+   L +  ++           D+  L        +P  + L  ++Y  ++Q  + G G
Sbjct: 183 LAKAHLARLPMLHLKPAQHARWFDWPALFEALAIDRQPIPAVLSFDNYTLLIQAAIAGQG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A+   ++V    +   L R + +     +  Y   PE  +    +  F +++  + +
Sbjct: 243 VAIGWRHLVDGLLEQGLLCRPIGESCLSRYGYYAVLPERKRRQRLVDGFVDWLQAELQ 300


>gi|218509279|ref|ZP_03507157.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 298

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 126/297 (42%), Gaps = 11/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F  + LRVF   AR GSFT A ++L ++Q+++S QI  LE  VG  LF R  R + LTE
Sbjct: 6   QFPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    +E +  L       ++S     G L I++T       L   L  F L +P 
Sbjct: 66  TGERLAPKVTEAFAMLHDAMATARDS---VDGTLAISSTHTFASKWLAPRLGSFHLKHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++    +  ID + +  D  IR         L    L+ +      +P   ++     
Sbjct: 123 IAVRFQASSDIIDFAREQIDVGIRWGDG-NWPGLALHWLMGLEFTPMLSPKLAESAGGIK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L K +L   GD+  K   +   +   D      R    Q+ S        + G G+
Sbjct: 182 EPRDLLKFDLFDAGDVWWKQWFEAAGVTETDLD----RRPRNQLGSQAVEADAAIAGHGV 237

Query: 242 ALL-PDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+L P +   +     L +  E   +     +  YPE  +N  K+KAFRN+I  + +
Sbjct: 238 AILHPAFYTAEIALGRLYQPFELTRSDGKAYWLVYPENRRNVPKIKAFRNWILEEMQ 294


>gi|120610488|ref|YP_970166.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120588952|gb|ABM32392.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 305

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 124/295 (42%), Gaps = 9/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GS + AAE + +S++  SR + GLE  +G +L +R  R +TLT+
Sbjct: 1   MDRLTAMRVFVEVVDRGSVSAAAEAMDMSRAMASRYLEGLENWLGARLLHRTTRRITLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+         +  + S +  G+LR+ ++       L G + +F  L+P 
Sbjct: 61  AGQTSLVTCREMLVLANDVMAQAGQGSTQAHGRLRLTSSSSFAMAQLTGAVVDFQALHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L++ ++ +D+  +  D A+RL   +    L+ R+L + +    A+P YL+    P 
Sbjct: 121 VDIDLVMVDRTVDLVQERIDLAVRLSNAV-DPVLVARRLASCYSVLCASPAYLERAGAPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H  I               L              +  N    +    + G+GI
Sbjct: 180 TPEDLQVHQCILHNAGFAPEYR----LRRAGEWTTVAVRGAITANETSVVRAAALAGAGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+LP Y V D   +  L +++ +       +   Y         L+   +F+  +
Sbjct: 236 AMLPTYFVGDSLADGTLRKVLPEYALEPLDIQAVYLSRRHQPLPLRLLIDFLADR 290


>gi|319793059|ref|YP_004154699.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595522|gb|ADU36588.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 302

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 130/296 (43%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +ARSG+   AA +L +  ++++R+I  LE EVG  LF R A G  LTE 
Sbjct: 1   MDWDNLRYFLELARSGTLMSAARRLEVDHTTVARRIQSLEKEVGAPLFSREAGGHRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +    +  +     S    SG +RI  T   G  +L   L  F   +P +
Sbjct: 61  GRRLQPQVEAMESAFQAVESTAPASQEGLSGLVRIGATEGFGTVVLAPQLALFAAQHPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L+   + + +S   AD  I L +P +   ++  KL    +  YA+  YL   +   +
Sbjct: 121 TIDLLAMPRLVHLSRREADIVISLERPARGP-VVVTKLTDYTLRLYASKQYLAAHKPIKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H  I++ D +      F+        +  P    L+  S L+     V G+GIA
Sbjct: 180 REDLRGHTFISYVDDL-----LFSKELQYLDELHRPDAFALRSTSVLAQHSAVVAGAGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LP ++   +  L  ++      + T +   P   K+  +++    F+   A   +
Sbjct: 235 VLPAFVADGDKGLRTVLPAQANFTRTFWMSMPAETKHLARMQTVWEFLRETAAAQR 290


>gi|254255102|ref|ZP_04948419.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124899747|gb|EAY71590.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 306

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVEMRSFTRAADIHSLARPVVSRAVADLEARFGSRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L+  ++E Q  + +P G LR+              +  F   +P 
Sbjct: 61  TAERIYERCAAVLDELDALELEAQAQTREPEGLLRVVAHTTAALYRHVPLIAGFKAAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L  + +D+  +  D  I +   + S + + R +  I     A P YL+    P+
Sbjct: 121 IRLDVTLTERPVDLVGEGYDIGIVVPYMLTSETTVVRLIERIPFVIVATPAYLRAHSHPV 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  +     + +    F         +  P    +  NS +   +  +   GI
Sbjct: 181 TPADLADHPFVPMSPSLRRPSLSFR---VDGNTLTIPYRFDISSNSPVFNREMVMRDFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +V+    +  LV ++ D      S  +   Y        K+KAF ++
Sbjct: 238 GVVPKTLVEAELASGALVELLGDAELVDASVEIKLAYANRALLPAKVKAFIDY 290


>gi|299533309|ref|ZP_07046693.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718839|gb|EFI59812.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 311

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 140/290 (48%), Gaps = 7/290 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  V R  SF  AA   + S + +S++I  LE E+G+KL +R  R + +TEQG +
Sbjct: 5   EDLRVFTTVVRKASFAEAAAAHNASPAFVSKRIRLLEQELGVKLLHRTTRRVAVTEQGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +  ++E    E+  +  +P G LR++T+   G+N++   L + +  YP +Q++
Sbjct: 65  VYHWAQRILDEVEHLLQEVDVTRRQPRGLLRVSTSFGFGRNVVAPALSQLIAQYPALQLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R L   H    AAP Y++    P ++ E
Sbjct: 125 LEVFDRIVDVAAEGFDLDVRVGDEI-APHLIARHLADNHRVLCAAPAYIQRRGSPRTLDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ +   +        F  L +  +         L  N     +Q+   G GI L  
Sbjct: 184 LAAHDCLVIKE--RDHPFGFWKLRSGSQERSVKVTGPLSTNHGEMAVQWARDGHGIVLRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + V  +    +L++++ +    +  ++  YP  L+ + K++    F+  
Sbjct: 242 LWDVAADLQAGSLLQLLPEWQQQA-NIWAVYPTRLERSAKVRVCVEFLQE 290


>gi|149917748|ref|ZP_01906244.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149821530|gb|EDM80930.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 299

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 121/293 (41%), Gaps = 6/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +FDW++ R F V A  GSF+ AA  L  +Q ++ RQ++ LE E+G+ LF R    L LT 
Sbjct: 7   NFDWNRARAFLVTASEGSFSAAARALGTTQPTVGRQVAALEEELGVTLFERLGTRLELTA 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +        +     ++   G + I  +      LL   L      YP 
Sbjct: 67  TGVELVEHVRSMGEAATRMSLVATGQALSVEGTVSITASEATAAFLLPPVLTRLRTEYPG 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I ++  N+  D+    AD AIR  +  Q   LI RKL       YA+P Y++      
Sbjct: 127 IEIDIVASNQIRDLRRREADIAIRNTRTGQ-PELIVRKLRDTEGAFYASPDYIERAGPFD 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S ++  +  +  F D     ++         RP   P    +    +L   + C  G GI
Sbjct: 186 SAEDFHRAEIFAFDDSAM-MIDGLRAFGLEVRPEQFP----IMTGDHLVQWELCKRGVGI 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++   +    P + R+  DV T    +Y      L+ + +++   + +    
Sbjct: 241 CIMMREVGDAEPGVRRVFPDVPTIPVPIYLVCHRELRTSRRIRIVFDALVEAL 293


>gi|150018010|ref|YP_001310264.1| LysR family transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904475|gb|ABR35308.1| transcriptional regulator, LysR family [Clostridium beijerinckii
           NCIMB 8052]
          Length = 295

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 124/292 (42%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            ++ +L  F  VA+  +FT AA +L  SQS+I+ QI  LE E+G+ LF R  + ++LT +
Sbjct: 1   MEFRQLNAFITVAKLSNFTKAAFELGYSQSAITAQIQQLEKELGVNLFERLGKNISLTSE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      ++    +  +     +S    G L I     L    L   +KEF   YP+I
Sbjct: 61  GEQFLVYAKQIIKLCDEAK-SNLSTSDVVKGTLTIGANESLCAVRLPPLVKEFHDRYPEI 119

Query: 123 QIQLILDNKD---IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +I L ++  +     I  +  D A  + + I  S LI        +   A P +    ++
Sbjct: 120 EILLKMEGNNKCKTLIRENQIDVAFIIGQKINDSDLITELEFPEPLVLLAIPGHPLAFKK 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +  +++  +N+I    +  K     N         G    S +++ S  SI Q  + G 
Sbjct: 180 HVYPEDIADYNII----VAEKGCGYRNLFERSLNDAGVTPKSIMEMGSIQSIKQLTMSGL 235

Query: 240 GIALLPDYIVKDNPNLVRIME-DVITPSF--TVYFCYPEALKNTGKLKAFRN 288
           GI LLP    ++     +++E      SF  T    Y      +  L+AF +
Sbjct: 236 GITLLPKIAAQEELKRKQLIELQWWEDSFYLTTQMVYHRDKWGSRALRAFID 287


>gi|83858249|ref|ZP_00951771.1| transcriptional regulator, LysR family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83853072|gb|EAP90924.1| transcriptional regulator, LysR family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 310

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 125/289 (43%), Gaps = 8/289 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DW+++R F   A+ GSF+ A+  L L+Q ++SRQ+S LE  +G+ LF R  R + LTE
Sbjct: 16  DLDWNQVRAFLATAQEGSFSAASRALGLTQPTLSRQVSALEAHLGVTLFERGTRSMALTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +        +  +  S    GK+ I  T     + L   ++      P+
Sbjct: 76  AGQALLSPAKVMLDGALDLSLAAEGRSTSMQGKVSITATSLFAMSYLPPVIEALRHRAPE 135

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++I  N   D+    AD A+R  +P +   LI R +       YA+  Y++    P 
Sbjct: 136 LTLEVIASNSLQDLRRREADIAVRHVRPSEDE-LIGRLIGEHTAGLYASQGYVEQRGAPS 194

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ ++  H+ + F D + + +E +  L     P      S         ++     G G+
Sbjct: 195 ALADIHGHDFLGF-DNLDQALEVYQQLGLKVTPDQLRVFSG----HGEVLLAMVRQGLGL 249

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +LPD    +   L  ++ D +   F V+      L+   +++   + +
Sbjct: 250 CILPDGEFCE--GLEPVLADQVRVDFPVWLVTHRELQTNPRIRLVFDAL 296


>gi|115359955|ref|YP_777093.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285243|gb|ABI90759.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 309

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 121/272 (44%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            QL ++ S ++ +I  LE  V   LF+R  R + L+E G   +R  +EV  ++     ++
Sbjct: 24  RQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSEVGETFYRECAEVVGRVNELTDQM 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E    P+G+LRI        +     L EF   YP IQ+ +I++++ +D   +  D A 
Sbjct: 84  RELRATPTGRLRIQMLPGFALDHFGVPLAEFNRRYPGIQLDIIVNDRVVDPVEEGFDIAF 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           ++  PI S SLI+R+L  +     A+P YL     P   +EL +H    +     +    
Sbjct: 144 QIFPPI-SESLIERRLFVVRRLFCASPAYLDAHGAPQHPRELLQHTTALYSGYPSRN--- 199

Query: 205 FNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIME 260
             W  T    + E  +  + + NS   + +Y + G G+  LP  +  +      LV I+ 
Sbjct: 200 -RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASEALVAGRLVPILT 258

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D      +    YP   +   K+KA   F+  
Sbjct: 259 DFEIAPLSFAAVYPATQRQALKVKALVEFLAE 290


>gi|157961006|ref|YP_001501040.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157846006|gb|ABV86505.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 300

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 132/299 (44%), Gaps = 20/299 (6%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   +  F  +  +GSF+ AA++L +  +++SR+++ LET +  +L  R+ R L LTE+
Sbjct: 7   LELQLIYQFVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRKLRLTEE 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    +  + ++       S  KP G LRIA  + +   +    L EF   YPDI
Sbjct: 67  GIALFQQYQSIISQFDSI---SGLSVDKPEGTLRIAAPVSIVSMIFIKTLNEFCEQYPDI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ +  +N  ID+  +  D AI +      SS I   L  ++   +A+P Y+        
Sbjct: 124 QLHIAQNNNVIDLIDEGVDVAI-VGGTQPDSSWISSSLGVLNYGLFASPEYINKAPVLTH 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVLG 238
             EL+ H+LI       K    +NW  ++  P GE       + L ++     ++  V  
Sbjct: 183 PGELENHDLI-------KVWPLYNW--SLKHPSGESFYYDGKAKLTLSDLHGAVEATVDD 233

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GI   P+  VK    +  L  ++   I     +   Y +      K+K F  F+  KA
Sbjct: 234 GGILYGPELFVKKELKSGALQALLPQWIGEKRRISILYHQRSHQPLKVKLFIEFMQSKA 292


>gi|70734219|ref|YP_257859.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68348518|gb|AAY96124.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 303

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 121/293 (41%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + LS +  S  +  +E  +G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDLSPAVASAALKRIEEHLGARLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       L+  +  L     + SG L+++   D G+NLL   L EF   +P + +
Sbjct: 64  GFLEYARAALSNLDEGRRLLASGQDQVSGVLQLSAPSDFGRNLLLPWLDEFQREHPKLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSL+   +         AAP YL    EP  +
Sbjct: 124 RLLLGDRIADLFRQPVDIALRYGEP-EDSSLVALPVAPDNRRVLCAAPRYLARYGEPRQL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +HN + +  ++     D        R +          +    + ++ V G GIA 
Sbjct: 183 EQLAQHNCLLY--MLDSRAHDLWSFHDGKREVSLTVSGDRLSDDADVVRRWAVAGEGIAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V  +     L  ++ ++     ++          +  +K  R+ +  +
Sbjct: 241 KSWLDVAADVLAGRLQILLPELRCEGASLNLLCTHRAHLSKPVKLLRDLLQER 293


>gi|23501964|ref|NP_698091.1| LysR family transcriptional regulator [Brucella suis 1330]
 gi|23347912|gb|AAN30006.1| transcriptional regulator, LysR family [Brucella suis 1330]
          Length = 310

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 121/293 (41%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  SF+ AA++L L+Q ++SRQ++ LE ++G  LF R +R + L+E G   
Sbjct: 14  ALAAFDAVARHESFSAAADELSLTQGAVSRQVASLEEQLGAALFDRTSRNVVLSEAGRVY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +        +    +++          L +A     G   L   +  F+  YP I +  
Sbjct: 74  LQAIGPALASIRAASLQVMSQMRGT--TLNLAFLPTFGTRWLIPRIPRFVAQYPHIILNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   +  D AI + +P    +     L+   +    +P +LK+     S  +L
Sbjct: 132 ATRIGQFDFDREGLDAAIHIGQP-DWPNAECTFLMDETVAPVCSPAFLKDHPV-TSPHDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L             F  L      I  P    ++   + ++ Q CV G G+ L+P 
Sbjct: 190 LRLPLFNMASRPGAWEHWFRSLG-----ITTPVPGGMRFEQFSNVSQACVAGLGMGLMPL 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++++   +N  L+      +    + YF  P+    T  + AFR+++  + R+
Sbjct: 245 FLIRSEIENDQLIVACPHTVKSPSSYYFVAPKTRAKTPAVTAFRDWLLAEVRN 297


>gi|22125586|ref|NP_669009.1| llysr-family transcriptional regulatory protein [Yersinia pestis
           KIM 10]
 gi|45442102|ref|NP_993641.1| LysR family transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807987|ref|YP_651903.1| LysR family transcriptional regulator [Yersinia pestis Antiqua]
 gi|108812253|ref|YP_648020.1| LysR family transcriptional regulator [Yersinia pestis Nepal516]
 gi|145599190|ref|YP_001163266.1| LlysR family transcriptional regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149365594|ref|ZP_01887629.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|153949659|ref|YP_001400489.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|162421388|ref|YP_001606246.1| LysR family substrate-binding transcriptional regulator [Yersinia
           pestis Angola]
 gi|165925471|ref|ZP_02221303.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165937722|ref|ZP_02226284.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166008578|ref|ZP_02229476.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213791|ref|ZP_02239826.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167399534|ref|ZP_02305058.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167422285|ref|ZP_02314038.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426951|ref|ZP_02318704.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167466412|ref|ZP_02331116.1| substrate-binding transcriptional regulator, LysR family protein
           [Yersinia pestis FV-1]
 gi|218929586|ref|YP_002347461.1| putative LysR family transcriptional regulator [Yersinia pestis
           CO92]
 gi|229838029|ref|ZP_04458188.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229898590|ref|ZP_04513735.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229902589|ref|ZP_04517706.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|270490233|ref|ZP_06207307.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294504249|ref|YP_003568311.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|21958491|gb|AAM85260.1|AE013772_2 putative transcriptional regulator LYSR-type [Yersinia pestis KIM
           10]
 gi|45436965|gb|AAS62518.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108775901|gb|ABG18420.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|108779900|gb|ABG13958.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis Antiqua]
 gi|115348197|emb|CAL21125.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis CO92]
 gi|145210886|gb|ABP40293.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis Pestoides F]
 gi|149292007|gb|EDM42081.1| putative LysR-family transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|152961154|gb|ABS48615.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354203|gb|ABX88151.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis Angola]
 gi|165914472|gb|EDR33087.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165922580|gb|EDR39731.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165992960|gb|EDR45261.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204965|gb|EDR49445.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166958791|gb|EDR55812.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167052038|gb|EDR63446.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054053|gb|EDR63881.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229680036|gb|EEO76135.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|229688138|gb|EEO80209.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229694395|gb|EEO84442.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|262362368|gb|ACY59089.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis D106004]
 gi|262366325|gb|ACY62882.1| putative LlysR-family transcriptional regulatory protein [Yersinia
           pestis D182038]
 gi|270338737|gb|EFA49514.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294354708|gb|ADE65049.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|320014673|gb|ADV98244.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 313

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 131/289 (45%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LRVF +VAR   F  AAE++ +S + +S++++ LE  + + L +R  R +T++E G 
Sbjct: 7   LSDLRVFLLVARRAGFAAAAEEMGVSPAYVSKRVAILEKTLNVALLHRTTRRVTISEDGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     + H ++    EL     +P G LR+ ++   G+  +   L      YP +++
Sbjct: 67  RTYEWAQRILHDVDQMMDELSAIRQEPQGTLRVISSFGFGRRFVAPALSALAREYPRLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ ID+  +  D  IR+   I   +LI  +L        A+P +L+    P ++ 
Sbjct: 127 RFDVEDRLIDLVTEGVDLDIRVGDNIGD-NLIACQLAPNRRILCASPDFLQRYGTPKALS 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL     +   +             T ++ I       +  N    + Q+C+ G GIAL 
Sbjct: 186 ELPGFACLVIKERDHPFGIWRLHNGTEEQSIKV--TGPMASNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + VKD   +  LV I+ +    S  ++  Y   L  + K++    F+
Sbjct: 244 SYWDVKDNIHSGKLVHILPEYFQ-SANIWAVYVTRLAMSAKVRVSVEFL 291


>gi|254249256|ref|ZP_04942576.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124875757|gb|EAY65747.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 293

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 116/296 (39%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  +   G    A  ++ LS +++S +++ LE   G  L  R  R ++LT++
Sbjct: 1   MLLDNLALFLRIVEKGGLAAAGREVGLSPATVSERLTALERHYGAALLTRTTRAISLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  + +  +  ++      SG +R++   DLG+  +   +  FL  +P +
Sbjct: 61  GRTLVDGARRLLAEADELESRVRLGVQTLSGPVRLSAPADLGRERVVPVVDAFLADHPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+     D AIR R  +  SSL  R L        A+P YL     P  
Sbjct: 121 TVDLHLGDGYVDLVGQGLDFAIR-RGTLADSSLRSRSLGRARRVVCASPAYLAAHGTPAH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGI 241
              L  H+ I          E   W  ++D  +           N    +  +CV G GI
Sbjct: 180 PDALASHDCIVMRFGQELYAE---WPFSIDGVLKRVVVRGRRVANDGALVRAWCVAGHGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL     V+ +     LV ++         +   YP  +    +++A  + +    
Sbjct: 237 ALKSLVDVERDLASGALVEVLGAFSPGDVDLQIVYPGGVAQPRRVRALIDRLAQAL 292


>gi|49084320|gb|AAT51191.1| PA2681 [synthetic construct]
          Length = 310

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 8/288 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
               +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +L   
Sbjct: 14  TLLALAEHGSFAAAGRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGERLASR 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +    L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++    
Sbjct: 74  FRQAVDLLDEAKHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVVLETDYS 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            + +DI  +  D AIR+ + +  S L+ R+L        AAP YLK    P    +L  H
Sbjct: 134 ERFVDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLKRHGVPRIPADLAAH 192

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           N + F  L          L   D          +  N   +++     G GI    ++++
Sbjct: 193 NCLGFSGLHSYPEWK---LTRQDEQQPVRVRGSMVSNDNEALLCAARQGLGIFAAGEWLM 249

Query: 250 KDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +     LVR++ +        VY   P A   T    AFR ++  +
Sbjct: 250 SRDLEAGRLVRVLPEWKLDADAGVYLVRPSARYATAAASAFRQWVEAR 297


>gi|332187312|ref|ZP_08389051.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
 gi|332012733|gb|EGI54799.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
          Length = 319

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +  F  V  +GSF+ AA  L  S++++SRQIS LE   G+KL  R  R +T+T  G ++
Sbjct: 17  AMMSFAAVVSTGSFSAAANLLGYSKAAVSRQISRLEEAAGMKLLDRTTRTVTVTPAGREM 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           ++  + +  ++      +     +P G L++   +      +   +  FL  YPDI++ +
Sbjct: 77  YQHCARIADEVNEANRVMTGMLSRPRGDLKVNAPVVASLFNITQAIPAFLHEYPDIRLFM 136

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +   D+     D A  + +P    +L   KL    M   A+  YL     P +  EL
Sbjct: 137 NLSDSKADLLKGNFDVAFWVGEPY-DVTLDTVKLCDYEMVLAASVDYLDRRGRPATAAEL 195

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I    L         W  + D  I   R   L  NS     +  + G GI  LP 
Sbjct: 196 KEHLCILETHLSRIG----EWRLSADEIISVNR-GALTSNSVRLTREAMLAGMGIGYLPR 250

Query: 247 YIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++++ +    RI   + DV++    +Y  +        K++AF +++     D
Sbjct: 251 FLLESDIAAGRIEVLLPDVVSQRLPLYLLFSRGNYALSKVRAFVDYLTAAISD 303


>gi|209515677|ref|ZP_03264541.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209503913|gb|EEA03905.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 314

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 128/293 (43%), Gaps = 6/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+F  VA   ++T AA +L++S  S+SR IS LE  +  +L +R  R + LT
Sbjct: 1   MDL-LRSMRIFERVADGATYTSAARELNMSTGSVSRLISDLEQHLATRLLHRTTRRIALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +       +   L+  + E +   + P+G LR+  +  L Q+ L   ++ +   +P
Sbjct: 60  PAGQRYLARCHSILEALDEAEAEAKSIHLSPAGCLRVHASQSLAQHYLVPAVRSYRERHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q+ L L +  +++     D A+   + ++ SSLI  +L   +    A+PHYL      
Sbjct: 120 SVQVGLTLSDSPVNLLAGEFDMAVVAIEVLRDSSLIGTRLGRSYSVMCASPHYLDMHPMI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L   +LI         +E  +  AT    +       L ++S  ++     LG G
Sbjct: 180 HRLADLSSQSLICLAPKWSDSVELTSHAATAFETVSVK--PGLCISSQSALADALELGMG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + LLP +   D   +  LV I+         +Y  +   +    K++ +   +
Sbjct: 238 VGLLPLHAAVDAFRDGRLVHILPSCQFEPVDIYALFASKMFLDAKVRTWVEHL 290


>gi|323524601|ref|YP_004226754.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323381603|gb|ADX53694.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 325

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 123/298 (41%), Gaps = 12/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SF+ AA++L ++  ++S QI  LE E+G+ LF R  + + LTE G 
Sbjct: 9   LNAIKAFEAAARHESFSRAADELFVTHGAVSHQIRALEAELGVSLFARDGKRVRLTETGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L     +++    +   +L ++         +   +  F+  +P   +
Sbjct: 69  RYAQQVRAALGALCDATRQIRAGDRER--RLVVSMLSSFAARWVTPRVGSFIEAHPQWDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N   D + D  D AIR     + + L    L+        AP +    + P +  
Sbjct: 127 ELLSTNALTDFARDDVDVAIRFGYG-KYAGLHSELLLEEIFFPACAPSF-NGGKLPKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL    L+   D + +   D   L        EP+   L  +S   ++Q  + G GIAL 
Sbjct: 185 ELANLPLLRSDDELWRPWFDAAGLTDW----PEPKRGVLYQDSSN-LLQAAIDGQGIALT 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
              +         LVR+        +  YF  P  +  T ++ AFR+++F +   +K 
Sbjct: 240 RRSLAMHEIAAGRLVRLFNVDGPSPWQYYFICPPHMLETARVSAFRDWVFAEVGRFKL 297


>gi|83716924|ref|YP_440343.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167578977|ref|ZP_02371851.1| probable LysR-family transcriptional regulator [Burkholderia
           thailandensis TXDOH]
 gi|167617079|ref|ZP_02385710.1| probable LysR-family transcriptional regulator [Burkholderia
           thailandensis Bt4]
 gi|257140973|ref|ZP_05589235.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650749|gb|ABC34813.1| probable LysR-family transcriptional regulator [Burkholderia
           thailandensis E264]
          Length = 308

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 137/295 (46%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKVTLDELQAFAAVVDTGSITAAAQQLGLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G         +   +E+ + ++     KPSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLASARAIIDSVESAEEQMLARREKPSGRLRVDAASPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R +    +   A+P YL    +P
Sbjct: 121 RVELELNSNEGVIDLLERRTDVAIRIGR-LKDSTLHSRLIGNSRLRILASPAYLDAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L KH L+ F    P+ +  +  L     P        +  +S  ++ Q  + G+G
Sbjct: 180 RKAGDLGKHALLGFNQ--PESLNVWPILGADGEPCRIE--PAVWSSSGETLRQLALDGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIF 291
           I  L D++    +++  LV+I+          ++  Y      + ++ +F +++ 
Sbjct: 236 IVCLSDFMTAQDRESGRLVQILARHTQDVRQPIHAVYYRNTAISSRIASFVDYLV 290


>gi|171316463|ref|ZP_02905681.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171098403|gb|EDT43207.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 300

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 124/301 (41%), Gaps = 9/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F  AA     S S +S  +  LE ++G++L +R  R ++ T
Sbjct: 1   MQVDLGDLNAFVAVARAKGFREAARLADASASGLSEAVRRLEAQLGVRLLHRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    +    ++E     +     KP G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGARLLARLTPALSEVEAALDVVNTFREKPVGTLKLNVPMSAARLVLPSIVPRFLDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           +I+++++ D   +DI     D  IR  + ++   +I   +      +   AAP YL    
Sbjct: 121 EIRLEVVADESFVDILAAGCDAGIRYGERLEQD-MIAVPIGPRSQRLATAAAPAYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSI-MQYCV 236
            P   +EL  H  +  G      M  + +    +    EP     +Q+   + + +    
Sbjct: 180 RPAHPRELLDHACLR-GRFASGAMPAWEYERNGEVVRVEPSGPLVVQIGGAVDLSVDAAC 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI  L +  ++    N  L  +++    P    Y  YP        L+AF +FI   
Sbjct: 239 AGLGIVHLYEDWLRPYFANGALEPVLDGWWRPFSGPYLYYPGRRFVPAPLRAFVDFIKAD 298

Query: 294 A 294
           A
Sbjct: 299 A 299


>gi|323499233|ref|ZP_08104210.1| transcriptional regulator, LysR family protein [Vibrio sinaloensis
           DSM 21326]
 gi|323315621|gb|EGA68655.1| transcriptional regulator, LysR family protein [Vibrio sinaloensis
           DSM 21326]
          Length = 289

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 8/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R    V  +GSFT AAE+L +S+S  S+ ++ +E E+G+KLF R  R L++ + G + +
Sbjct: 1   MRTVVAVIETGSFTAAAERLGISKSLTSKYVNRVEEELGVKLFNRTTRKLSVNQSGHEFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   +V  + +    +L  ++   +G LR+  +    + LL   + EF   YPDIQI +I
Sbjct: 61  QQAQQVLMQFDKLYSQLPANNKGAAGPLRVTASQGFAEELLSPFIPEFHHRYPDIQIDMI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+ +D+     D A R  + +  S L  RK++++    YA+       +      EL 
Sbjct: 121 VTNQKLDLVEQGIDIAFRASE-LNDSGLNYRKILSVQSSVYASTELASLYQGD---AELS 176

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +   +   +L           AT          +  + NS   I Q  + G G++  PD 
Sbjct: 177 RLPCLIDSNLHSNSRWPLE-SATNRNTSSIAVKTVFKSNSPRLIRQLTLAGIGVSYQPDV 235

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I K   +   L ++        + +   Y        ++K F +F+  K 
Sbjct: 236 IAKTYVNRGQLHKLDIGFKPLRYPLNALYRGGDYQPERIKVFLDFVTEKL 285


>gi|315123380|ref|YP_004065386.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315017140|gb|ADT70477.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 312

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 139/290 (47%), Gaps = 7/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +   V   GSF  AAE  ++ +S IS+QIS LE E+G++L  R  R  +LT  G+++
Sbjct: 6   RLLMLLEVVEQGSFAKAAEIRNIDRSVISKQISRLEDELGVRLLNRTTRSFSLTAAGAEM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +   E+   L  T    +    +P G L++  +  +G+  LQ  + +F   +P ++++L
Sbjct: 66  IKKAGELRSLLGETVRMAENYHQEPRGVLKVTASTLIGRRYLQPVINDFQKRFPQVEVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +DI  +  D A R+ +P + SSLI RK+    +   AAP +++    P++I +L
Sbjct: 126 RLDDRLVDIVSEGFDLAFRVGEP-KDSSLIARKIARNRLLLLAAPAFIETYGMPITITDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +    ++     + +E  N+         +   S  + N    ++   + G+   L P 
Sbjct: 185 AQLPAASYASNSLR-VEGINYYNHTGEHCEQKIKSVFRANDAEVLLMKTLSGTTYFLAPA 243

Query: 247 YIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +I+     +  LV ++ DV +     +Y  YP       + + F + +  
Sbjct: 244 FILDKEVIDGQLVPLLTDVKLMEHSAMYAVYPH-RDLPVRTRLFFDAVRE 292


>gi|222086567|ref|YP_002545101.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724015|gb|ACM27171.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 296

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            WD  R F  V + GS + AA +L L+Q +I R I  LE  +G +LF R  +GL  T+  
Sbjct: 7   SWDFYRTFLAVLQHGSLSAAARELGLTQPTIGRHIDALEEAIGAELFTRSQQGLLPTDAA 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      + +           S  + SG +RI+ +  +G  +L   L      YPD+ 
Sbjct: 67  LALKPYAETLANTTAALLRVASSSRDRVSGTVRISASEVIGVEVLPPILAGLQAAYPDLT 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   +   D+    AD A+R+  P Q   L+ R + +I +  +   +YL+   EP +I
Sbjct: 127 IELSASDAVEDLLQREADIAVRMVAPAQD-VLLARYIGSIPLGLFTHRNYLERYGEPKNI 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H LI F                   P+ +      + +  +++      G GI  
Sbjct: 186 RELHQHKLIGFDRQTAYIRT-----MMKRYPLLDGVSFTFKSDHSIALHNALRAGIGIGF 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               + K +  LVR++ ++  P    +    E LK + + +   + +     ++
Sbjct: 241 YQIPLAKRDGELVRLLPEIGLP-LDTWVAMHENLKTSPRCRVTFDALVAGLLEY 293


>gi|170735831|ref|YP_001777091.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818019|gb|ACA92601.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 291

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR+G+   AA QL++ Q+++ R+I+ LE E+  +LF R      LT  
Sbjct: 1   MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPSLYVLTTA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +     T +  +     + +G +RIATT  LG+  +   +      +  I
Sbjct: 61  GEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDTLGKRFVVPAIANLRRRHAGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  +   +  +++   AD AIR  +P +S  LI R+L  +    YA+  YL    EP++
Sbjct: 121 DVVCVTSAQITNLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRRYLAERGEPVA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D H+L+ +   +   M    W A    P    R+   Q +S + +++  + G GIA
Sbjct: 180 GSAFDGHDLVMYQQPVVPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEAALAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP +     P+LVR+M       F V+      L  T +++A    +  +
Sbjct: 235 ELPCFRADTEPDLVRLMPQRCN-HFDVWLVAHADLYKTARVQAVIEAVVDE 284


>gi|239994400|ref|ZP_04714924.1| LysR family transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 296

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 132/288 (45%), Gaps = 7/288 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF   A+SGSF  AA+ + +S  +++R I+ LE ++  +LF+R  R + L+E G    
Sbjct: 1   MRVFAEAAKSGSFVGAADAMSMSAPAVTRCIAHLEAQLNTRLFHRTTRQVKLSEVGEHYL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S +   +E ++  +    + P G+L I   I  G+  +   + +FL  YPDI++   
Sbjct: 61  IHVSRILADIEQSEAAVSGIDLVPRGELNITAPILFGERYVTPIISQFLKDYPDIRVNGH 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +++     D AIR+  P + SSL    +  +     AAP YL +       ++L 
Sbjct: 121 FHDDVVNLIDSNMDVAIRIGNP-KDSSLYGVTVGYVRRVTCAAPSYLASSPAIKKPEDLK 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+++         +  ++      RPI        Q N   + +   + G G+  L  Y
Sbjct: 180 RHSVLYPKRFNEPAVWTYH---KNGRPIAIKLTPRFQSNQNRAAINAAIAGVGVVRLMSY 236

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            V +   + +LV ++EDV      +     E  KN  K+K F +++  
Sbjct: 237 QVAEALRSGDLVSLLEDVEDKKLPIQVVSVEGRKNLTKVKMFIDYVKA 284


>gi|116053752|ref|YP_788187.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296386507|ref|ZP_06876006.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|115588973|gb|ABJ14988.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 304

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 117/298 (39%), Gaps = 6/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D LRVF   AR  SFT AAE+L  +Q ++S+QI  LE E+   LF R  RG+ LT
Sbjct: 6   MPPSLDLLRVFESAARQLSFTAAAEELGTTQPAVSQQIKRLEKELATPLFQRVHRGIVLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L R  +     ++     L          L++AT        L   L  F   +P
Sbjct: 66  DAGQLLLRHVAAGLETIDAGIAALGARQRHE--VLQVATDYAFAAYWLMPRLPRFHQAHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+   + +       D AI              +L    +    +P  ++  + P
Sbjct: 124 HLDVSLVTSERGLAGQRGDIDVAILFGDGRSKHG-EAHRLFREEVFPVCSPRLVEGLQLP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+   L +  ++           D+  L        +P  + L  ++Y  ++Q  + G G
Sbjct: 183 LAKAHLARLPMLHLKPAQHARWFDWPALFEALAIDRQPIPAVLSFDNYTLLIQAAIAGQG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A+   ++V    +   L R + +     +  Y   PE  +    +  F +++  + +
Sbjct: 243 VAIGWRHLVDGLLEQGLLCRPIGESCLSRYGYYAVLPERKRRQRLVDGFVDWLQAELQ 300


>gi|146282765|ref|YP_001172918.1| LysR family transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145570970|gb|ABP80076.1| transcriptional regulator, LysR family [Pseudomonas stutzeri A1501]
          Length = 318

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 124/296 (41%), Gaps = 13/296 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+ AA +  L+ S+++R++  LE  +G +LF R    +         
Sbjct: 9   QLELFIDVLECGSFSAAARRHGLTPSAVARRVDALEAALGCQLFSRSTHAVRAMPAALAF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  +L   + E       P G++RI      G+  L   L EFL  YP + IQL
Sbjct: 69  AERARRIVQELHLARAEATSLDSAPEGRIRIDAPAPFGRRHLAPALAEFLQAYPGVDIQL 128

Query: 127 ILDNKDIDISMD---YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L +  +D+  +     D  +R+  P+  + L+   L  +     A+P YL+    PL+ 
Sbjct: 129 RLIDSFVDLHGEHLGEVDLVLRIG-PLADTRLVATPLAPMVRIVCASPAYLERRGVPLTP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H+ + +  L P     F         +  P    +  N+  +++   + G GIA 
Sbjct: 188 EQLPEHDGLDWDALAPPHAWRFE--RNGRSQLLRPGRLRMVANNAEALLTGALAGLGIAH 245

Query: 244 LPDYIVKD---NPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP +++ +      L+ +  +       +  +Y        ++ + +    F+  +
Sbjct: 246 LPTWLISEYLLRGELLPLFCEGGLPQPEASGIYALRLTREADS-RTRLLLEFLKSR 300


>gi|289665821|ref|ZP_06487402.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 303

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 121/297 (40%), Gaps = 9/297 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L+ F  V    SF  AAE L LS S++S+ I  LE  +G +L  R  R +  +  G
Sbjct: 5   DFAELKAFVAVVERQSFARAAEHLGLSPSALSQTIRQLEGRIGARLLNRTTRSVAPSASG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L+   + ++ ++     E  E++ +    LRI T   + + ++   L  F   +PD+ 
Sbjct: 65  ELLYNRIAPLFREMAAAVAEASEATGQMRSTLRINTLGIVARTIIAPRLARFHHAHPDVV 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +++D+   DI     D  IR+   ++   +  R    + M   A+P YL     P S 
Sbjct: 125 LDIVVDDALADIVAGRFDAGIRVGGQLEKDMVAVRLTPDLKMVVVASPDYLARRGTPKSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  I +   +      + +     R I       +  N     +   V G GIA 
Sbjct: 185 TELHDHACINWRLQMDGRHYRWEFEKRGQR-IEVTVDGPVVTNHADIGIAAAVNGLGIAY 243

Query: 244 ------LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                 +   + +    LV+++ D       ++  YP        L AF + +  +A
Sbjct: 244 HFERDGVGALLAQ--GRLVQLLTDWSISRPGLFLYYPNRQHRPALLGAFIDCLLDRA 298


>gi|167583915|ref|ZP_02376303.1| Transcriptional regulator [Burkholderia ubonensis Bu]
          Length = 309

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 139/295 (47%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKVTLDELQAFATVIDTGSITSAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E+ + ++     KPSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGQAFLQNARAIIESVESAEEQMTARREKPSGRLRVDAASPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R +    +   A+P YL+    P
Sbjct: 121 QVELELNSNEGIIDLLEKRTDVAIRIGR-LKDSTLHSRHIGNSRLRLLASPAYLEAHGHP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L KH L+ F    P+ +  +  L T   P        +  +S  ++ Q  + G+G
Sbjct: 180 RKVEDLAKHALLGFNQ--PESLNVWPILGTDGEPYRI--APAIWSSSGETLRQLALDGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIF 291
           I  L D++    ++   LV+++          +   Y      + ++ +F +++ 
Sbjct: 236 IVCLSDFMTVHDREAGRLVQLLARQTQDVRQPINAVYYRNTAISSRIASFVDYLI 290


>gi|167893869|ref|ZP_02481271.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167918585|ref|ZP_02505676.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|254197554|ref|ZP_04903976.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|169654295|gb|EDS86988.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
          Length = 303

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 107/267 (40%), Gaps = 8/267 (2%)

Query: 28  HLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQES 87
            +S   + R+I  LE  +G+KL YR  R L ++E G+        +  +    + E    
Sbjct: 27  GVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSEDGAAFLERCRGLLTEWAQAENEAVAG 86

Query: 88  SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLR 147
                G L ++     G+  +      F+   PD+Q+   L ++ +D+  +  D +IR+ 
Sbjct: 87  RRAVGGHLIVSAPAAFGRKHVAPLAPAFVADKPDLQMSFNLTDRVVDLVREGYDLSIRIG 146

Query: 148 KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNW 207
             +   + +  KL +        P Y +    P ++ +L  HN + F     +  ++  W
Sbjct: 147 GAV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPRTLDDLASHNCLAFNL---QGGQNRGW 202

Query: 208 LATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVI 263
               +  +   R+S  L  N    + ++   G G+     + +        L  ++++  
Sbjct: 203 YFRRNGKLVTMRVSGTLDCNDGELLHRWVSEGLGLGWRSTWEIAQQLARGELETVLDEYA 262

Query: 264 TPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P + +   YP+      +++ F +++
Sbjct: 263 LPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|296158873|ref|ZP_06841701.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295890748|gb|EFG70538.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 332

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 127/295 (43%), Gaps = 5/295 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +     + GSF+ AA ++++   +++R+++ LE ++G +L  R  R L LT+ G 
Sbjct: 31  LEAMTMLLAAIQKGSFSAAAREMNVPVPTLTRRVTDLEEQLGTRLLTRTTRKLALTDAGV 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++   +   + E       P G+L I T + LG+  +   + +FL L+P+I +
Sbjct: 91  AYATTARQILELVAEQEREATGEFTAPRGELTITTPVLLGRLYVLPEIMDFLDLFPEIDV 150

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++++D+   + D A+R+ + +  SS+I  ++        A+P  L     P    
Sbjct: 151 TLTQSDRNVDLVDAHVDLAVRIGR-LPDSSMIATRIGAFRPVVCASPALLAERGVPRVPA 209

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +   + F   +      F      +R +  P    L+V+S  S     V G G   L
Sbjct: 210 DLAELPCVVFNGPMLSPDWTFR-CPDTERLVTIPIAPRLRVSSPDSAAAAAVRGLGFTQL 268

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             Y V    +   L  ++E        +   +        KL+ F +F+  + R+
Sbjct: 269 LHYHVAEAIEAGKLEIVLEAFEFDPVPIQLVHVSRNMMPLKLRRFLDFVTPRLRE 323


>gi|126738231|ref|ZP_01753952.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126720728|gb|EBA17433.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 313

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 139/291 (47%), Gaps = 10/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++ F  VA+SGS T AAEQL  SQ ++ R I  LE ++G +LF RHARGL+L+E G
Sbjct: 8   DWSLIQSFLAVAQSGSLTGAAEQLGRSQPTLGRHIRALEQDLGQRLFDRHARGLSLSETG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L  +   +  ++++  ++    S +  G +R+  ++    +LL   + E     P I+
Sbjct: 68  VSLLPMAEAMKEQMQSFSLQAAGLSNQLEGTVRLTASVFASHHLLPEIIAEIRRREPLIE 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+  +   ++    AD A+R+ +P Q   ++ R +  + +  +AA  YL     P   
Sbjct: 128 VELVPTDSSENLLFREADIALRMYRPTQ-LDVVTRHVADLRLGIFAAKSYLDRRGRPKLP 186

Query: 184 QELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +EL  H L+ +   DLI   M+D  W A              + ++  +  Q   LG GI
Sbjct: 187 EELWSHELVGYDRNDLILHTMQDMGWPAKRSHFKT-------RCDNQATYWQLVRLGCGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 I + +P +  ++ ++  P   V+      ++ T +++   + +  
Sbjct: 240 GFCQSGIARADPLVEELLPEISIPPLPVWLTAHAVMRQTPRIRRVWDLLAE 290


>gi|260597930|ref|YP_003210501.1| hypothetical protein CTU_21380 [Cronobacter turicensis z3032]
 gi|260217107|emb|CBA30885.1| hypothetical protein CTU_21380 [Cronobacter turicensis z3032]
          Length = 300

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 127/296 (42%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+  L+VF  V    SF  A++ L +  S++SR I+ LE ++ ++L  R  R + LT+ 
Sbjct: 5   LDFKTLKVFIAVVEKESFVGASKLLEMPTSNVSRCIAQLEEKLSLQLIERSTRHMKLTQA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   LE T+ EL    ++  G LRI    + G  LL   + +F   YP++
Sbjct: 65  GHLLYSRAKPLLEALEQTETELTLRQMQLRGPLRICIPSESGPALLGSAIADFACQYPEL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I  + +    +   D  D AI + R  +  S  I R L+TI     AAP  ++    P 
Sbjct: 125 EISCVTNLSGFESLRDDLDVAIIITRGQMDDSDYIARHLMTIPCTIVAAPSVIQRYGTPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I++ ++   IT    +      + ++ T             +VNS     +  V G G 
Sbjct: 185 HIRQFEELPCITTVSALKGA--PWQFVNTKGDFETIKVKGHYRVNSGEMAGRAAVAGVGF 242

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L     +   ++  L+ +  +       ++  Y        K +AF +F+  + 
Sbjct: 243 AILAKQACQPYINDGRLIEVQFEQAAAPLQLFAVYSNRRFLPAKTRAFIDFVHQRL 298


>gi|218462975|ref|ZP_03503066.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Kim 5]
          Length = 298

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 126/297 (42%), Gaps = 11/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F  + LRVF   AR GS T A ++L ++Q+++S QI  LE  VG  LF R  R + LTE
Sbjct: 6   QFPLNALRVFEAAARLGSITKAGDELGMTQTAVSYQIKLLEENVGEPLFLRRPRQIALTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    +E +  L       ++S     G L I++T       L   L  F L +P 
Sbjct: 66  TGERLAPKVTEAFAMLHDAMATARDS---VEGTLAISSTHTFASKWLAPRLGSFHLKHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++    +  ID S +  D AIR         L   +L+ +      +P   +      
Sbjct: 123 IAVRFQASSDIIDFSREQIDVAIRWGDG-NWPGLTLHRLMGLEFTPMLSPKLAEAAGGIR 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L K +L   GD+  K   +   +   D      R    Q+ S        + G G+
Sbjct: 182 EPRDLLKFDLFDAGDIWWKQWFEAAGVTETDLD----RRPRNQLGSQAVEADAAMSGHGV 237

Query: 242 ALL-PDYIVKDN--PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+L P +   +     L +  E   +     +  YPE  +N  K+KAFRN+I  + +
Sbjct: 238 AILNPAFYAAEIALGRLYQPFELTRSDGKAYWLAYPENRRNLPKIKAFRNWILEEMK 294


>gi|190890434|ref|YP_001976976.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695713|gb|ACE89798.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
 gi|327190567|gb|EGE57659.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 293

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 132/290 (45%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P++
Sbjct: 61  GGIFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P +   L+  KL    +  YA+  YL     P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERP-EQGRLVSSKLTDYTLGLYASRDYLAAHGRPGD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L  H  I + + +      F         +     +  ++++ +   +    G+GI 
Sbjct: 180 VEALKAHPRIGYVEDL-----LFTASLNFSGEVMRSWDAGFEISTAIGQTEAVRSGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +L DYI +  P L RI+ ++       +  Y E  ++  ++++  +F+  
Sbjct: 235 ILHDYIARQYPELQRILPEISI-RRAYWTTYHETARDLVRVRSVVDFLQE 283


>gi|311106843|ref|YP_003979696.1| glycine cleavage system transcriptional activator [Achromobacter
           xylosoxidans A8]
 gi|310761532|gb|ADP16981.1| glycine cleavage system transcriptional activator [Achromobacter
           xylosoxidans A8]
          Length = 311

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 119/299 (39%), Gaps = 13/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F   AR  SF+ AA +LH++ +++ + +  LE  +G  LF+R A G   L  T 
Sbjct: 7   LNALRAFEASARHQSFSAAAAELHVTPAAVGQLVRTLEQWLGAPLFHRGASGKARLVPTA 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +            +      +      SG L +A +       L   ++ F L +PD
Sbjct: 67  AAERALPEIQAG--LGKLALGLERLKEGSLSGMLTVAVSPAFAAKWLLPRIERFQLAWPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L  + K +D      D  +R         L   KL+   ++   +P  L+  +   
Sbjct: 125 TDVRLDTNLKPVDFVAQQIDIGVRYGAG-SWPGLAAEKLMDEEVYPVCSPELLRRRKSLR 183

Query: 182 SIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              +L    LI    +  +        WL       G      +++N+  +++Q  + G 
Sbjct: 184 QSADLAGETLIHDLSMDGQLGFPTWAMWLEKAGVE-GVSTARGMKINNSAAVLQAAIDGH 242

Query: 240 GIALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL    +  D+     LVR+   + +  +   Y  Y    +   +L AFR+++F +A
Sbjct: 243 GVALARSVMTHDDLAAGRLVRLFPRMKVASALAYYVIYRPQDRELPRLAAFRDWLFQEA 301


>gi|90418750|ref|ZP_01226661.1| LysR family transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336830|gb|EAS50535.1| LysR family transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 311

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 136/293 (46%), Gaps = 8/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R + LT 
Sbjct: 1   MDTLTRMRAFISVVENEGFSAAARKTGRSKALLSKYVRELEDELGALLINRTTRQIALTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G       S +   LE+   E +E++ +  G +R++     G   L  +L +F   +PD
Sbjct: 61  AGEVYLSRASAILSDLESLNEEAREATGEAKGTIRVSAARTFGDAELGLSLVDFAKEHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + LD+  +++  +  D AIR+ + +  S++I R+L ++     A+P  L+    P 
Sbjct: 121 IGLDIHLDDSFVNLVEEGFDVAIRMTR-LADSAMIARRLASLDFAIVASPELLQRLGRPN 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
              ++  +  +   D   +   ++ +     +      +S     NS +++    + G G
Sbjct: 180 HPSQIAGYPAVI--DSNSRMFSNWVFRDPQTKETIPVTVSGQFTANSPVTVRAAAIAGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +AL P ++V+   ++  LV +++D +     +Y  +P       +++ F +++
Sbjct: 238 LALSPTFVVRRDLESGRLVTVLDDYMPSEAGIYAVFPHRRHLPARVRLFVDYL 290


>gi|296160371|ref|ZP_06843188.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295889352|gb|EFG69153.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 322

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 126/305 (41%), Gaps = 18/305 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      + F   AR  SF+ AA++L ++  ++S QI  LE E+G+ LF R  + 
Sbjct: 1   MDLRQLPALNAIKAFEAAARHESFSRAADELFVTHGAVSHQIRALEAELGVSLFARDGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           + LTE G +           L     +++    +   +L ++         +   +  F+
Sbjct: 61  VRLTETGRRYATHVRAALMALADATRQIRAGDRER--RLVVSMLSSFAARWVTPRVGSFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P   ++L+  N   D + D  D AIR     + S L    L+        AP +   
Sbjct: 119 EAHPQWDLELLSTNALTDFARDDVDVAIRFGFG-KYSGLHSELLLEEIFFPACAPDF-NG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L K  L+   D + +   D   L        EP+   L  +S   ++Q  +
Sbjct: 177 GKLPKTPADLAKVPLLRSDDELWRPWFDAAGLTDW----PEPKRGVLYQDSSN-LLQAAI 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+AL    +         LVR+ +      +  YF  P  +  T +++AFR+++F +
Sbjct: 232 DGQGVALTRRSLAMHEIAAGRLVRLFDVDGPSPWQYYFICPPQMLETARVRAFRDWVFEE 291

Query: 294 ARDWK 298
              ++
Sbjct: 292 VGRFR 296


>gi|264679599|ref|YP_003279506.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210112|gb|ACY34210.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 311

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 140/290 (48%), Gaps = 7/290 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  V R  SF  AA   + S + +S++I  LE E+G+KL +R  R + +TEQG +
Sbjct: 5   EDLRVFTTVVRKASFAEAAAAHNASPAFVSKRIRLLEQELGVKLLHRTTRRVAVTEQGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +  ++E    E+  +  +P G LR++T+   G+N++   L + +  YP +Q++
Sbjct: 65  VYHWAQRILDEVEHLLQEVDVTRRQPRGLLRVSTSFGFGRNVVAPALSQLIAQYPALQLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R L   H    AAP Y++    P ++ E
Sbjct: 125 LEVFDRIVDVAAEGFDLDVRVGDEI-APHLIARHLADNHRVLCAAPAYVQRRGSPRTLDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ +   +           L + ++         L  N     +Q+   G GI L  
Sbjct: 184 LAAHDCLVIKERDHPFGVWK--LRSGNQERSVKVTGPLSTNHGEMAVQWARDGHGIVLRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + V  +    +L++++ +    +  ++  YP  L+ + K++    F+  
Sbjct: 242 LWDVAADLQAGSLLQLLPEWQQQA-NIWAVYPTRLERSAKVRVCVEFLQE 290


>gi|209546653|ref|YP_002278571.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537897|gb|ACI57831.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 303

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 68/303 (22%), Positives = 117/303 (38%), Gaps = 8/303 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+G F   A     S S +S  +  LE  +G++LF R  R +  T
Sbjct: 1   MKVDLGDLNAFVAVARAGGFREGARASGSSASFLSEAVRRLEAALGVRLFNRTTRSVVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L         ++E+    +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGKGLLERLGPALTEVESALDVVNGFRDRPAGSLRLNVPVSAARLVLPAIVPPFLEAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI++++I +   +D+     D  IR  + ++   +I   +          A+P YL    
Sbjct: 121 DIRLEVITEESFVDVLAAGCDAGIRYDERLEQD-MIAIPIGPRIQRFATAASPVYLDRHG 179

Query: 179 EPLSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            P    EL  H  +   F         +F     V R      +      +    +   +
Sbjct: 180 RPQHPSELLGHACLLGRFASGALTTPWEFERDGEVVRVEPSGPLIVRVGGATDLTVDAAI 239

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+GI  + +  ++   D+  L  I+E         +  YP        L+AF +F+   
Sbjct: 240 SGTGIICVFEDWLRPHFDSGALEPILEPWWQRFSGPFLYYPGRRLVPAPLRAFIDFVKAS 299

Query: 294 ARD 296
           A+ 
Sbjct: 300 AKQ 302


>gi|83950162|ref|ZP_00958895.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
 gi|83838061|gb|EAP77357.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
          Length = 295

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 9/292 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F  VAR  SFT AA++L L+QS++SRQI  LE ++G  LF R  R + LT++G  L
Sbjct: 3   QLHSFEAVARRMSFTAAADELCLTQSAVSRQIRALEEDLGRALFLRKHRAIELTQEGRDL 62

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +    ++      L+ +S  P  ++ +AT++      L   L+ F   YP+I +++
Sbjct: 63  FEAVTRGLDEIALAVNGLRRASDTP--QITVATSVAFSYYCLMPRLERFADRYPEIDLRI 120

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  ++ +D+  D AD A+          +  R+L    ++   +  YL+N  E     +L
Sbjct: 121 LATDQLVDLGKDDADVAVLFGDG-NWPGVEARRLFGERVYPVCSAGYLQNHPELRRPSDL 179

Query: 187 DKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
               L+    G  I   ++   WL       G+P    +++NSY  ++Q    G G+AL 
Sbjct: 180 LDQTLLHLDGGGTIWGAVDWHAWLVQQGV-TGQPVRRGIRLNSYPMVLQGAEAGRGVALG 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             YI      +  LV + +  +  S + Y     A      + AF  ++  +
Sbjct: 239 WSYITDAMLASGQLVCLFDTPLVTSCSYYIGASSARAADPAVAAFLQWMVEE 290


>gi|288935323|ref|YP_003439382.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890032|gb|ADC58350.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 297

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 123/289 (42%), Gaps = 9/289 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E   G +L +R  R LTLT  G K+  
Sbjct: 8   QVYLRICELGSLSAAARALGMSRPMVSRYLEQMENWAGARLIHRSTRRLTLTPAGEKVLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            T  +    +    E Q +   PSG LR+A        L+   L +FL  YP ++++L +
Sbjct: 68  KTRGLTRIADEIAGERQRA--DPSGTLRVACAHFTAMQLISPLLPDFLARYPQLRLELDI 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N  + +  +  D AIR+    +  + I R+L        AAP +L+      ++ +L +
Sbjct: 126 NNHPVSLIGERIDVAIRITDNPEPGA-IARRLGLCRSLLCAAPRWLQQHGPLATLDDLQQ 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN + +        + + +     +         L       +++  V G GIA+LP+  
Sbjct: 185 HNCLLYSHF---AGQRWQFSDAQGQEASVAVSGNLSAGISSLLLEAAVAGCGIAMLPELE 241

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +    +  L  ++ D    + +VY  Y         L  F + +  + 
Sbjct: 242 ARSALASGALEVVLPDWTPKALSVYGIYLSRDYQPDGLPLFLDALQRRL 290


>gi|229011689|ref|ZP_04168872.1| Transcriptional regulator, LysR [Bacillus mycoides DSM 2048]
 gi|228749647|gb|EEL99489.1| Transcriptional regulator, LysR [Bacillus mycoides DSM 2048]
          Length = 305

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 133/295 (45%), Gaps = 14/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   ISIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      ++H++E  +  +Q+ +    G L I + + +   LL   + +F   YP
Sbjct: 67  EAGRVLLSHCKTIFHEVEQARSAIQDLNGLHHGSLTIGSLLTVVNYLLPPAILDFNKQYP 126

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L        +  +  D  I    P+Q   ++   L    +       +    
Sbjct: 127 NIELSVLGLRTGEIREKLLQNELDMGITF-LPVQDKEIVSIPLYKSELTLVVPTSHSLTE 185

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R+ +SI+EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 186 RKYVSIEELQDYPLI----LLPKNFYLTELITSHCQNFNFKPKPILEISTMESLIQMVAQ 241

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G GI +LP    D++  ++   ++I  +  TP+  +   Y          + F  
Sbjct: 242 GMGITVLPKPYIDFLQNEHIQAIKI--ENPTPTIDIGLIYRRDKYMCAATRKFIE 294


>gi|262193942|ref|YP_003265151.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262194068|ref|YP_003265277.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262077289|gb|ACY13258.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
 gi|262077415|gb|ACY13384.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 300

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 122/292 (41%), Gaps = 9/292 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +         ++R GSF  AA  L +S +++S+ I+ LE E+G++LF R  R ++LT+
Sbjct: 3   SHNLSDFDAVLAISRKGSFRAAALDLGMSTTALSKAIAKLEEELGVRLFNRTTRSVSLTD 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +     +   + +      ++     PSG LRI T    G+ +L   + EFL  +P+
Sbjct: 63  AGRRFVEQVTPALNDIHEALDAVRSQQETPSGMLRINTFATAGREILAPLVLEFLRRFPN 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMH-AYAAPHYLKNCREP 180
           ++I L+ + K +DI  +  D  +R  + +  + +I   L     +   A P Y      P
Sbjct: 123 VRIDLVTEGKLVDIVAEGFDFGVR-GEDLVPNDMIAIPLGPERRYAVVATPDYFDGRDRP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
               +L  ++ +    +       F W    +  + +  +   L ++         +   
Sbjct: 182 RVPSDLLAYSCV---RVRLPNGAIFRWQFEAEGQLAQVDVDGPLTLDEASLARIAVLDSI 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GI    +  V+D+     LVR+++    P   +   YP         K F +
Sbjct: 239 GIGFFMESDVRDDIEAGRLVRVLDRWTPPLSRLCLYYPSRRNPPAAFKVFVD 290


>gi|330967860|gb|EGH68120.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 294

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 119/290 (41%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  G 
Sbjct: 4   IEDLRLAVTLSRCESLSAAARVLNVSPPALSMRLRKLETQLGITLANRDARRLSLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R ++ +  +LE      ++   +  G LR+A     G+  +   L  F  L+P + +
Sbjct: 64  RFARESAHLLEQLEALPESFKQRDERLVGILRLAAPFGYGRQRIAPLLARFAKLHPQVSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L           +D  I +   +  S  I R L   H    A+P YL     P +  
Sbjct: 124 HLDLRETPW-PDRHDSDAVIHIGN-LNDSLWIARPLAQNHRWLCASPAYLDQHGVPSTPD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  I   +          W  +        RI   L  N      ++   G GI L
Sbjct: 182 ELASHRCICIRENDEDVTL---WHLSKGHAKKTLRIEPALLSNDGSVARRWAEQGLGIVL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V +   + NLVR++ D    S  +    P     + +++A   F+
Sbjct: 239 RSQWDVSEAIASGNLVRVLTDWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|116254887|ref|YP_770723.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259535|emb|CAK10673.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 302

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 117/301 (38%), Gaps = 8/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+G F   A     S S +S  +  LE ++G++L  R  R +  T
Sbjct: 1   MKTDLGDLNAFVAVARAGGFREGARVSGSSASFLSEAVRRLEGQLGVRLLNRTTRSVVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L         ++E+    +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGKGLLERLGPALSEVESALDVVNGFRDRPAGALRLNVPVSAARLVLPAIVPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++ D   +D+     D  IR  + ++   +I   +          A+P YL    
Sbjct: 121 DIRLEVVTDESFVDVIAAGCDAGIRYDERLEQD-MIAIPIGPRIQRFAIAASPDYLDRRG 179

Query: 179 EPLSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            P   +EL  H  +   F         +F     + R      +      +    +   +
Sbjct: 180 RPQHPRELLGHACLLGRFSSGAMTAPWEFERDGEIVRVDPTGPLIVRVGGATDLAVDAAI 239

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+GI  L +  ++   D+  L  I+E         +  YP        L+AF +F+   
Sbjct: 240 SGTGIVCLFEDWLRPHIDSGALEPILEPWWQRFSGPFLYYPGRRLVPAPLRAFIDFVKAS 299

Query: 294 A 294
           A
Sbjct: 300 A 300


>gi|330816143|ref|YP_004359848.1| Transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327368536|gb|AEA59892.1| Transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 302

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 116/293 (39%), Gaps = 7/293 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             + VF  V  +  F  AA +L +S S ISR ++ LE  +G++L  R  R + +T+ G++
Sbjct: 5   QAMTVFVTVVETEGFASAARKLRVSPSVISRVVTELEAHLGVRLLTRTTRVVRVTDAGAR 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
               +  +   +   ++     +  P G+L +   +  G+  L     E+L  YP + +Q
Sbjct: 65  FFEDSRRILADIAAAELGAASENTTPRGQLTVTAPVMFGKLHLLPITHEYLRRYPAVNVQ 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++ +++  +  D  IR+ + +  SSL    +  +     A+P YLK    P    E
Sbjct: 125 CWFLDRIVNLVDEGVDVGIRIGE-LPDSSLQAIPVGKVRRVLCASPAYLKAHGTPRHPDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I      P     F           +PR   L   +  S +   V G GI    
Sbjct: 184 LASHVTIQSVSAAPTAEWRFREGERQTLVSIQPR---LSTTTNDSAIDAAVAGLGIMRGI 240

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            Y + +      L  ++ D       V+  + E      K++AF +      R
Sbjct: 241 SYQITEEVAAGRLRIVLADYEIEPLPVHVIHREGRHVNQKVRAFVDLAVETLR 293


>gi|295677035|ref|YP_003605559.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295436878|gb|ADG16048.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 302

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA +L +S++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDVNSLTLLVDILDAGNLSEAARRLKMSRANVSYHLNQLERSVGLQLVRRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + + L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRTIRNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMSDWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P + +    P +
Sbjct: 121 VLDVMFENRVEDLMRDEIDIAVRVMSE-PPQNLVARDMGPVRYVACASPEFARTHGMPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    LIT   +  +              + EP    +   ++L + Q  + G G+ 
Sbjct: 180 LDDLRTAPLITAAVIGKQLRLAAYLREERHEVLLEP---TIISENFLFLRQAVLAGLGVG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTV-----YFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+PDY+V+D+     ++  +     ++     Y  Y     +T     F +F+  +A+
Sbjct: 237 LVPDYVVQDDLKRGAVLTALDAWRLSIFGTHMYMLYMPNRHHTRAAATFIDFVLEQAQ 294


>gi|170691580|ref|ZP_02882745.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143785|gb|EDT11948.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 338

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 124/298 (41%), Gaps = 12/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SF+ AA++L ++  ++S QI  LE E+G+ LF R  + + LTE G 
Sbjct: 9   LNAIKAFEAAARHESFSRAADELFVTHGAVSHQIRALEAELGVSLFARDGKRVRLTETGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L     E++    +   +L ++         +   +  F+  +P   +
Sbjct: 69  RYASHVRTALTALSDATREIRAGDRER--RLVVSMLSSFAARWVTPRIGSFIEAHPQWDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N   D + D  D AIR     + + L    L+        AP++    + P +  
Sbjct: 127 ELLSTNALTDFARDDVDVAIRFGYG-KYAGLYSELLLEEIFFPACAPNF-NGGKLPKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+   D + +   D   L        EP+   L  +S   ++Q  + G GIAL 
Sbjct: 185 DLANLPLLRSDDELWRPWFDAAGLTDW----PEPKRGVLYQDSSN-LLQAAIDGQGIALT 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
              +         LVR+ +      +  YF     +  T ++KAFR+++F +   +K 
Sbjct: 240 RRSLAMHEIAAGRLVRLFDVDGPSPWQYYFICTPQMLETARVKAFRDWVFGEVGRFKL 297


>gi|146283674|ref|YP_001173827.1| transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145571879|gb|ABP80985.1| probable transcriptional regulator [Pseudomonas stutzeri A1501]
          Length = 268

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 120/266 (45%), Gaps = 6/266 (2%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +SQ ++SR +  LE  +G++L  R  R +  TE G  L RV +  + ++++    L E  
Sbjct: 1   MSQPALSRAMRQLEERLGVRLLARTTRSVAPTEAGEHLLRVVAPRFEEIDSELGLLSEFR 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
            KP+GKLR+         +LQ  L   L   PD+ I++I+D    DI  +  D  +RL +
Sbjct: 61  DKPAGKLRLTAGEHAAITILQPVLATLLPDNPDLSIEVIVDYGLTDIVAEGYDAGVRLGQ 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            +    +  R    + M    +P Y     +P+  ++L +HN I     +P     F W 
Sbjct: 121 QVAKDMIAMRIGPDMRMAVVGSPAYFARHPQPVIPRDLMQHNCINI--RMPTYGGIFPWE 178

Query: 209 ATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVIT 264
              +    + R+   L  N+    +   + G G+A + + +V+ +     L+R++ED   
Sbjct: 179 FEKNGEELKVRVEGQLVFNNIAMRLGAALQGLGLAYMAEDLVQAHVAEGRLIRVLEDWCE 238

Query: 265 PSFTVYFCYPEALKNTGKLKAFRNFI 290
           P    +  YP   +++      R+ +
Sbjct: 239 PFSGYHLYYPSRRQSSPAFTLLRDAL 264


>gi|218516121|ref|ZP_03512961.1| transcriptional regulator, LysR family protein [Rhizobium etli
           8C-3]
          Length = 277

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 110/281 (39%), Gaps = 13/281 (4%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79
           F  AAE   +S + +++ I  +ET +G KL +R  R   LTE G   +        ++  
Sbjct: 1   FAAAAEIAQVSPAMVAKHIKTIETRLGAKLIHRTTRRHQLTEVGQLYYERCKRALSEVAL 60

Query: 80  TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139
            +    E    P G+LR+   +  G  +L   L ++   YPD+ I+L LDN   D+  + 
Sbjct: 61  AEASASELQSAPRGRLRVVAPVSFGTQVLVPALIDYQNAYPDVSIELSLDNNVHDLVGEG 120

Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIP 199
            +  I +  P+   SL+ R L        AAP YL     P+S + L  H  +  G    
Sbjct: 121 FELGIHIG-PLSDDSLVARPLTPYRRILAAAPDYLARHGRPVSPEALTNHLCL--GHSYW 177

Query: 200 KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG-------IALLPDYIVKDN 252
           +  + ++ +         P       N   ++    + G+G       +A  P   +   
Sbjct: 178 RRQDRWHLVGPGGEMRDVPISGKFSTNQGAALRMAALSGAGNRASAGTVARCP---ISPK 234

Query: 253 PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             L R   +       ++  Y    + T  L+   +F+  +
Sbjct: 235 AVLSRCCREWSYRPVPMFLVYAPNRRPTAMLRTVIDFLVER 275


>gi|87122005|ref|ZP_01077890.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86162803|gb|EAQ64083.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 305

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 130/297 (43%), Gaps = 7/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            ++ ++L  F  +    + T AAE+L LS++ +S+Q+  LE E+G+ L  R+ R L  T+
Sbjct: 6   KYNLNRLTYFVAIIEEKTITAAAERLGLSKAVVSKQLQLLEEELGVSLVVRNTRHLHATK 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +  + E     +       E S +PSG +R+ + IDLG   L   + +F   YP 
Sbjct: 66  TGEAFYTRSKEALKYAQHAFDTAAEDSHEPSGLIRLTSPIDLGIFQLAPIITQFCAKYPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ L ++  DI     D + R+   +Q SS   RK+ +    A + P +      P 
Sbjct: 126 VKIEVNLSDEVKDIVAKRYDLSFRVGW-LQDSSNRARKIGSFREVALSTPAF-AKNWAPK 183

Query: 182 SIQELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + ++L       +   D   +         T ++       + L  N+ L+I +  +   
Sbjct: 184 TPKDLSSLPFTAYDVIDRSTRTFIHQASRGTKEQSTEVELTTNLSFNTTLAIREALLTSQ 243

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              +LPD+ VK +     L  ++ +       +Y   P +   T  ++ F + I  K
Sbjct: 244 YFGVLPDFTVKKDLKAGVLQELLPNWKLREGGIYIVRPPSQLRTQAVQLFIDAIISK 300


>gi|168819846|ref|ZP_02831846.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343352|gb|EDZ30116.1| transcriptional regulator, LysR family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087553|emb|CBY97317.1| probable RuBisCO transcriptional regulator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 301

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 136/290 (46%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+    F ++A  GS++ AA +  +S+S +SR++S LE ++G+ L  R  R L LT+ 
Sbjct: 2   IDWNDYWYFALIAEEGSYSRAAIRAQVSKSVLSRRMSALEEQLGVHLIQRTTRRLALTKV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  +    + ++ E  +  +Q     P G LRI+  + + +  L   + EF+  +P  
Sbjct: 62  GEQFAQECQTLVNQSERARAVVQAVQEYPQGTLRISAPVFMAETWLGALINEFIARWPLA 121

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            +QL+  N+ +D+  +  D A+ +    +  SSL  +K+ T++    A+P +++   +  
Sbjct: 122 NVQLLAVNRPVDMIAEGIDIALSVSSGALPDSSLHYKKINTLYDILVASPQWVEQHPDLK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L  H       L    M+ ++ L    + I       L  N+   ++Q    G+G+
Sbjct: 182 TIGDL--HRAPAMVRLADGRMQSWH-LINGSQEITLSLSPRLYSNNLRVLLQAVAGGNGV 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           ALLP    K+   N  LV++  +       +Y  +P         + F +
Sbjct: 239 ALLPFPACKEELQNGGLVQLFPEWSGQPRQIYALFPANKGMPAVARYFMD 288


>gi|146294520|ref|YP_001184944.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145566210|gb|ABP77145.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
 gi|319427885|gb|ADV55959.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 308

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 123/297 (41%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F  VA  G+ + AA ++ +S +S S  I  LE ++   LF R  R L LT Q
Sbjct: 1   MLINDLALFVRVADCGNISAAAAEMDISAASASAAIKRLEKQLDTSLFIRTTRSLRLTVQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L   +  +     K SG L ++ + D G+NL    L EFLL +P +
Sbjct: 61  GERYLIHCRRALSDLALGEQAIASDKGKISGTLSLSVSSDFGRNLFVPWLDEFLLDFPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L +       D  D A+R  KP Q S+ +   + ++     A+P YL       S
Sbjct: 121 LVRLHLGDNISSFYHDKIDVAVRYGKP-QDSNQVAFPICSVDRVLCASPEYLAKFGVLDS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGI 241
           +++L +HN + +            WL   D    + R++  +  N      ++ V G G+
Sbjct: 180 LEQLVEHNCLFYKL---DDRTHDQWLFRRDGQEFKVRVTGNRSANDAEIARRWAVAGKGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                  + D+     LVR++ +       +Y   P     T  +   R  +  + +
Sbjct: 237 VFKSSLDLADDLISGRLVRLLPEYQGEPVDLYLVCPGREHVTPVVLLLREMLRQRTQ 293


>gi|238750921|ref|ZP_04612418.1| Transcriptional regulator [Yersinia rohdei ATCC 43380]
 gi|238710835|gb|EEQ03056.1| Transcriptional regulator [Yersinia rohdei ATCC 43380]
          Length = 300

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 140/304 (46%), Gaps = 13/304 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRGQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLGHARQILGAVDDAEEQIALRQLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRIGA-LRDSTIHARLLGASRVRILASPDYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +I EL  H+L+ F        E  N  +    P G   I+  L  +S  ++    + G 
Sbjct: 180 QTIDELANHSLLGFTQP-----EFLNQWSLPHLPGGRSSITPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI  L D++ +++     LV +M      ++  +   Y    +   ++  F +++  + +
Sbjct: 235 GIVELSDFMTREDQLAGRLVEVMASQTLETWQPINAVYYRNTQLAARITCFLDYVSEQIK 294

Query: 296 --DW 297
             DW
Sbjct: 295 GSDW 298


>gi|116253177|ref|YP_769015.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257825|emb|CAK08923.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 308

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 129/295 (43%), Gaps = 9/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            WD  R F  V + GS + AA +L L+Q +I R +  LE  +G +LF R   GL  T+  
Sbjct: 6   SWDFYRSFLTVLQQGSLSAAARELGLTQPTIGRHVDALELAIGAELFTRSPNGLLPTDAA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +                + +G +R++ +  +   +L   L      YP++Q
Sbjct: 66  LALKPYAETLAATTAALLRTASGQRERMAGTVRVSASEVIAVEVLPAILGPLQETYPELQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L   +   D+    AD A+R+ +P Q ++L+ R++  I +  +A   YL+    P ++
Sbjct: 126 IELSASDMIEDLVNREADIAVRMAEP-QQAALVVRRIGDIPLGFHAHRRYLERHGLPQTL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
            +L  H LI F            ++    +    P I+   + +S L+ +     G GI 
Sbjct: 185 TDLTNHRLIGFD-------RQTAYVRMAMKRYAVPGINFSYRTDSNLAQLSAIRAGVGIG 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L    + + NP+LV ++ D        +    E LK++ + +A  + +    +D+
Sbjct: 238 LCQIGLARGNPDLVHVLPDAFAIPLGTWVAMHENLKSSPRYRATFDALVKGLQDY 292


>gi|307309318|ref|ZP_07588981.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306900187|gb|EFN30805.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 323

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 129/289 (44%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF    R  +FT AA +L ++Q+++S  I GLE ++G+ LF+R  R + LTE G K H
Sbjct: 14  LIVFEAAGRHQNFTRAASELGMTQAAVSYAIRGLENQLGVPLFHRVHRAVQLTEAGEKFH 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    +++ +  +++    + +  + +A +       +   L       P+I +++ 
Sbjct: 74  ADVSVGLARIQKSAEDIRAKGRETN--VTLAASTAFASMWMLPRLARLREDLPEIDLRIQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +D+D+  +     IR   P          L    + A A P Y++    P +  +L 
Sbjct: 132 TSVRDLDLDDEPIPLGIRGGDPSHWPRYHAAVLADEVIQAVATPAYIETHGLPATPADLI 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HNLI   + + +  +   W A+        +   L +N Y+ ++Q  + G GIAL  ++
Sbjct: 192 RHNLIHLEEPVRRACDWTEWFASAGLAYPT-QGKRLAINDYVLVIQAVLAGEGIALGWEH 250

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +      +  LV +   V+      Y  +P + +   + +  R+++  +
Sbjct: 251 LTARQVRSGALVPVGGHVLRTGQAFYVVWPRSRELNSQARRIRDWLLEE 299


>gi|152984384|ref|YP_001346963.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959542|gb|ABR81567.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 306

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 123/293 (41%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+VF   + SGS + AA QL +S +  S  +  LE+E+ ++LF R  R L LT +G 
Sbjct: 4   YDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  LQ    + +G L+++   D G+NLL   L EF   YP + +
Sbjct: 64  AFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPRLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D AIR   P   SSL+   L         AAP YL    EP   
Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGAP-ADSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN + +   +   + D        R +          +    + ++ + G G+  
Sbjct: 183 DDLREHNCLLY--QLGGRVHDRWAFQRGRRSLTLTVAGDRVCDDADVVRRWALAGKGLVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V ++     L  ++ +    +  +       ++ T  +   R F+  +
Sbjct: 241 KSWLDVAEDVRAGRLRLLLPEWQGEATPLNLLCTHRVQLTRPVTLLRGFVRER 293


>gi|254254663|ref|ZP_04947980.1| regulatory protein LysR [Burkholderia dolosa AUO158]
 gi|124899308|gb|EAY71151.1| regulatory protein LysR [Burkholderia dolosa AUO158]
          Length = 319

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 133/287 (46%), Gaps = 6/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R +  V R GS + AA  L L+Q ++ R I  LE  +G+ LF R   GL  T    
Sbjct: 31  WELYRSYLGVLREGSLSGAARALGLAQPTVGRHIEALEKSLGLDLFTRSQSGLLPTPAAL 90

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      +        +   +S     G +RI+ +  +G  +L   + +    YP+++I
Sbjct: 91  ELRPYAEAMGS-SAAALMRAADSQGGVKGTVRISASEVIGAEVLPPIVADLQATYPELRI 149

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+  D+ +  AD A+R+ +P Q++ L+ R++  + +  YA   YL     P +  
Sbjct: 150 ELALTNRVHDLLLREADIAVRMTRPQQNALLV-RRVGVLEVGLYAHRAYLARRGTPQAPS 208

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H LI F +  P      + L    R          + +S L+ +     G+GI + 
Sbjct: 209 ELAQHALIGFDEETPFLRAAASTLPVEWRRHA----FTARSDSDLAQLALIRAGAGIGVC 264

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +P LVR++ DV +     +    E L+++ + KA  + +F
Sbjct: 265 QVALARRDPQLVRVLPDVFSFPLETWVTMHEDLRHSARCKATFDALF 311


>gi|325293551|ref|YP_004279415.1| transcriptional regulator LysR family [Agrobacterium sp. H13-3]
 gi|325061404|gb|ADY65095.1| transcriptional regulator LysR family [Agrobacterium sp. H13-3]
          Length = 373

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 4/287 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              WD  R F  V R GS + AA +L ++Q +  R I  LE  +G  LF R   GL  TE
Sbjct: 65  DVSWDFYRTFLSVLRDGSLSAAARELGITQPTAGRHIGALEEAIGFPLFIRSPHGLMPTE 124

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +                K  G +RI+ +  +G  +L   +     ++P 
Sbjct: 125 AALALRPYAENLAATAAALMRAASGEVGKIEGTVRISASDIIGVEMLPPIIAAMQEIHPR 184

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L L +   D+    AD AIR+ +P Q + ++ R +    +  +A   YL     P 
Sbjct: 185 LEIELSLSDTLEDLLRREADIAIRMTEPQQDA-IVMRYIGNFRLGFHATRDYLARAGIPK 243

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++EL+ H +I F    P        + ++D   P  E     ++ +S L+ +      +
Sbjct: 244 NMEELNNHRMIGFDRKTPFIRAAIQRMRSLDPEIPDIEEISFEIRADSNLAQLAMIRASA 303

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           GI +    + + +P LV+++     P    +    E LK + + +A 
Sbjct: 304 GIGVCQIGLARKDPRLVQVLPKTDIP-LHAWVAMHENLKTSPRCRAV 349


>gi|254472427|ref|ZP_05085827.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211958710|gb|EEA93910.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 307

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 125/298 (41%), Gaps = 12/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L  F   AR GSFT AAE+L L+Q ++S+Q+  LE  +G++LF R  + + LT+ G 
Sbjct: 9   IDCLIAFESAARHGSFTRAAEELFLTQGAVSKQVRLLEGRLGVELFKRIRQRIVLTDAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                      K+ +   ++   +      L +A     G   L   L  F   YP+   
Sbjct: 69  IYLHDIRGTLEKMTSATRQVMSFAGSED-VLNVAVLPTFGTRWLARRLPRFHERYPEASF 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +  +  D S++  D AI   +P+ + + I   L    +   A+  +        + +
Sbjct: 128 NLSVRLRPFDFSVEPFDGAIHYGEPVWAGA-IAEPLFQEEVIPVASRAFRDRH-SLRTPE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L     +          + F+      D     PR      + +  I Q    G G+AL
Sbjct: 186 DLVDVMRLHQSTRPDAWQKWFSLAGVETDGAFQGPR-----FDQFTMISQAAASGLGVAL 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +P + +++      LVR+ +  +  S   +F YPE       +K+F+ ++  +A++ +
Sbjct: 241 VPKFFIEEELAAGTLVRLFDISLKLSSAYHFVYPENRTLRPVVKSFKAWLQEEAQEQQ 298


>gi|254460625|ref|ZP_05074041.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           HTCC2083]
 gi|206677214|gb|EDZ41701.1| transcriptional regulator, LysR family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 298

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 130/294 (44%), Gaps = 6/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +SFDW+  R F  V  +GS + AA  L+ +Q ++ RQI+  E E+G+ LF R  R L +T
Sbjct: 6   ISFDWNHARAFLAVVETGSLSAAARVLNQTQPTLGRQITAFEEELGVTLFERVGRSLKIT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ L      +        +     S    G +RIA +     +LL   + +   + P
Sbjct: 66  QTGADLADHVRAMADAAGRMTLMASGQSQAIEGIVRIAASELFAAHLLPPIVAKLRSIAP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ ++  N   D+    AD A+R  +P +   LI R +       YA+  Y++    P
Sbjct: 126 KIEVDIVAANTVSDLLQREADIAVRNVRP-EQPDLIARLIHDSSGRFYASKGYIQKRGRP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + Q+   H+ ++FG+      +   +LA +   +   +      NS ++  +    G G
Sbjct: 185 RNYQDFKTHDFVSFGN----TDQMLEYLAMLGLELTADQFKVGSSNSLVA-WEMVKQGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA +   + + +P+L  ++ D     F  +      L  + +++   + +  + 
Sbjct: 240 IAPMSVDVARASPDLEVLLPDSDPVMFPTWLVTHRELHTSRRIRLVYDLLAEEL 293


>gi|323528789|ref|YP_004230941.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385791|gb|ADX57881.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 307

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 119/297 (40%), Gaps = 12/297 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L VF  +A  G+ T AA +L  S  ++SR +  LE E G  L  R  R   LT  G
Sbjct: 12  SLRDLEVFVAIAEEGNLTAAARRLDRSLQAVSRSLQVLEREAGTLLVARTTRQCRLTTAG 71

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    +V   L   + EL E +   +G+LRI      G   L   L  FL  YP + 
Sbjct: 72  EQFYTRIKQVLADLAMARAELAEYATTVTGRLRICGPTLFGPRYLAPLLAAFLARYPQLT 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
             L L  +  D ++  AD  IR+ +    S+LI R+L TI    +A+P YL+    PL  
Sbjct: 132 ASLDLSEEYDDPAVSGADVTIRIGE-TPDSNLIARRLGTIRRVTFASPAYLEARGRPLRP 190

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ +    L    +  +     V+  +        + NS  +I      G GI  
Sbjct: 191 ADLKQHDCVVRSALPEASLWRYRSKRGVEEAVQV--RGRFESNSTAAINDAVASGLGIGR 248

Query: 244 LPDYIVKDNPNLVR------IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              + +     LV+      I+ D       +   +    +   + + F  F+  + 
Sbjct: 249 AAYWQI---GELVQQRRVELILTDYELSPLPLQALWLPTRRLPARTRLFVEFLAARL 302


>gi|224824272|ref|ZP_03697380.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224603691|gb|EEG09866.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 300

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 122/289 (42%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+F   AR  SF+ AA +L ++  ++S+QI  LE  +G+KLF R    + L++ G 
Sbjct: 7   LNALRIFEAAARLESFSAAANELFITHGAVSKQIKQLEEWLGVKLFDRTGGRVKLSDTGW 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      +    +     +L +       +L + +T    ++ L   L +F   YPD+++
Sbjct: 67  RYLIQVQDGLDLIANATSQLLQPDRLR--RLTVNSTPTFARHWLLPRLTQFRDAYPDVEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+  ++DI       D AIR R P      I +  +        +P  L+      S  
Sbjct: 125 HLVTSDRDIGRLDTPFDIAIR-RGPGDWPGHIAKPFLEEWELPLCSPALLERAPV-ASPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+ + D  P   +   WL     P  +P  S L  + +   ++  + G G+ L 
Sbjct: 183 DLARHTLL-YADTRPTAWQ--RWLTLAGVPDLKP-ASTLHFDRFSLALEAAMDGLGVVLG 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  + +D      L   +   I P     +  P    +   + AF +++
Sbjct: 239 PMPMAQDEIARGRLTTPLSSPIVPVRAYCWVAPRTAVDDPTVSAFCHWL 287


>gi|221210257|ref|ZP_03583237.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
 gi|221169213|gb|EEE01680.1| LysR substrate binding domain protein [Burkholderia multivorans
           CGD1]
          Length = 315

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 137/295 (46%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFVAVVDSGSITAAAQQLDLTVSAASRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQDARAIIESVENAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D A R+ + ++ S+L  R++ +  +   A+P Y++    P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAFRIGR-LKDSTLHSRRIGSSRLRMLASPAYVEAHGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H L+ F    P+ +  +  L     P+       +  +S  ++ Q  + G+G
Sbjct: 180 RKVEDLGRHTLLGFTQ--PESLNVWPILGADGEPLRIE--PAIWSSSGETLRQLALDGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIF 291
           I  L D++    +D   LV ++          +   Y      + ++ +F +++ 
Sbjct: 236 IVCLSDFMTAHDRDAGRLVPVLARQTLDVQQPINAVYYRNTAISSRIASFVDYLV 290


>gi|212633465|ref|YP_002309990.1| helix-turn-helix domain-containing protein [Shewanella
           piezotolerans WP3]
 gi|212554949|gb|ACJ27403.1| Helix-turn-helix, Fis-type [Shewanella piezotolerans WP3]
          Length = 314

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 142/297 (47%), Gaps = 7/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + + +F+ +  +GS   AA+ L+L +S++SR++  LE E+ +KLF+R +R +TLT  
Sbjct: 1   MKTEDITLFHRIVETGSLVEAADILNLPKSTLSRRLQLLEDELNVKLFHRQSRAMTLTAS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +  T+ +  +LE T  EL   + + +G LRI          +   + EF+ L P +
Sbjct: 61  GSHFYDKTTPMLAQLEQTMSELSGQNAEVAGHLRILIFPIPELIHITHAIFEFMDLNPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I+  +  D+  +  D A  L      + ++ R ++T  +H +A+P YL     PL+
Sbjct: 121 TVEIIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHMITEMVHFFASPEYLAKTDIPLT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L +HN I F     K   D       DR +       L VNS  + ++  ++G GI+
Sbjct: 181 QECLSEHNSILFRYPNGKIFNDVP--FGKDRTLAVK--GNLCVNSLETCLEATLMGRGIS 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++P    +   D+  L  + E++       Y  YP     +   + F +F+     +
Sbjct: 237 MMPLAFAQEHVDSGKLKMLFEEIEPYEGKCYLVYPSRRFISLASQRFIDFMMKAMEE 293


>gi|170736148|ref|YP_001777408.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818336|gb|ACA92918.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 306

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 129/292 (44%), Gaps = 9/292 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L+  ++E Q  + +P G LR+        N L   +  F   +P+
Sbjct: 61  TAERIYERCAAVLDELDALEVEAQTHTREPEGLLRLVAHTTAALNRLVPLIAGFKSAHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L  + +D+  +  D  I +   + S S + R +  I +   A P YL+    P 
Sbjct: 121 VRLDVTLTERPVDLVGEGYDIGIVVPYMLTSESTVVRLVERIPVVIVATPAYLQAHARPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  +    + P               +  P    +  NS +   +  +   GI
Sbjct: 181 TPADLANHPFV---PISPSLRRPALSFRVDGNLLTVPFRFDISSNSPVFNREMVMHDFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRN 288
            ++P  +V+    +  LV+++ED   +     +   Y        K+KAF +
Sbjct: 238 GVVPKTLVEAELASGALVQLLEDADLVDAFVEIKLAYANRALLPAKVKAFID 289


>gi|169797782|ref|YP_001715575.1| putative transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213155420|ref|YP_002317465.1| putative transcriptional regulator [Acinetobacter baumannii AB0057]
 gi|215485132|ref|YP_002327373.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301344591|ref|ZP_07225332.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301511393|ref|ZP_07236630.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301596849|ref|ZP_07241857.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332855822|ref|ZP_08436056.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332866598|ref|ZP_08437096.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|169150709|emb|CAM88619.1| putative transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213054580|gb|ACJ39482.1| putative transcriptional regulator [Acinetobacter baumannii AB0057]
 gi|213988403|gb|ACJ58702.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332727260|gb|EGJ58705.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332734528|gb|EGJ65640.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 297

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 121/294 (41%), Gaps = 11/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++VF  +A+ G+ T AAE L+ S++ +SR +  LE     +LF R+ R ++LT 
Sbjct: 1   MDTLKAIQVFVSIAQHGNLTKAAEHLNYSRAMVSRYLEHLEHTFSTRLFQRNTRKISLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K       +  + +  Q     +  + +G +R    + L +  +   +++F   +P 
Sbjct: 61  AGEKALLYCENILQQQQLLQEL--AAPEQHNGTIRFTCGLFLFELGVAECIRQFKRQHPH 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ  + L    +D+     D A+R+ + +    LI R +  I     A P YLK     L
Sbjct: 119 IQFDVYLTESTMDLIDAQVDLALRITQKVAD-GLIARPVCQIESVFCAHPDYLKQHSPLL 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H  I          + +       +P   P     + N   ++   C+   G+
Sbjct: 178 HPRQLIQHECIAHHS----QHQFWTLFDNEQQPQNYPLNVTFKSNDVNALYDMCLHAQGV 233

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP  +V+ +     L  + ++   P  ++   Y          + F  F+  
Sbjct: 234 AMLPTLLVERDLKEKRLKALFKNFTAPELSLSVVYASRQHLPRITQEFIAFMIE 287


>gi|51596852|ref|YP_071043.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 32953]
 gi|170023856|ref|YP_001720361.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|186895933|ref|YP_001873045.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590134|emb|CAH21771.1| putativeLlysR-family transcriptional regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|169750390|gb|ACA67908.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186698959|gb|ACC89588.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
          Length = 313

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 131/289 (45%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LRVF +VAR   F  AAE++ +S + +S++++ LE  + + L +R  R +T++E G 
Sbjct: 7   LSDLRVFLLVARRAGFAAAAEEMGVSPAYVSKRVAILEKMLNVALLHRTTRRVTISEDGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     + H ++    EL     +P G LR+ ++   G+  +   L      YP +++
Sbjct: 67  RTYEWAQRILHDVDQMMDELSAIRQEPQGTLRVISSFGFGRRFVAPALSALAREYPRLEL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  ++++ ID+  +  D  IR+   I   +LI  +L        A+P +L+    P ++ 
Sbjct: 127 RFDVEDRLIDLVTEGVDLDIRVGDNIGD-NLIACQLAPNRRILCASPDFLQRYGTPKALS 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL     +   +             T ++ I       +  N    + Q+C+ G GIAL 
Sbjct: 186 ELPGFACLVIKERDHPFGIWRLHNGTEEQSIKV--TGPMASNHGEIVHQWCLDGQGIALR 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + VKD   +  LV I+ +    S  ++  Y   L  + K++    F+
Sbjct: 244 SYWDVKDNIHSGKLVHILPEYFQ-SANIWAVYVTRLAMSAKVRVSVEFL 291


>gi|134295905|ref|YP_001119640.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139062|gb|ABO54805.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 303

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALERRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL   PD
Sbjct: 61  EGAAFLERCRGLLSEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLADKPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 MQLSFNLTDRVVDLVREGYDLSIRIGGSV-DPNFVAVKLASNRRVVCGTPAYFRKHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L +HN + F     +  ++  W       I   R++  L  N    + ++     G
Sbjct: 180 SLDDLLRHNCLAFNL---QGGQNRGWYFQRHGKIVTMRVTGNLDCNDGELLHRWVAESLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + +    +   L  ++++   P + +   YP+      +++ F +++
Sbjct: 237 LGWRSTWEIAAQLETGELETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|311105679|ref|YP_003978532.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760368|gb|ADP15817.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           68 [Achromobacter xylosoxidans A8]
          Length = 295

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 114/291 (39%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AA++L ++  ++S+ I  LE  +G+ LF R  RG+ LT+ G 
Sbjct: 9   LNALRAFEAAARHLSVKDAAQELCVTPGAVSQMIKSLEQHLGVALFQRVNRGIQLTDAGH 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +   S      L ++TT       L   L +F   +P I +
Sbjct: 69  GFLPPVRNAFRQILAASARIALPSESR--VLTVSTTAFFASAWLVPRLHDFHARHPQIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  N       D AD AIR     +   L    L+T+ +   A+   +     P    
Sbjct: 127 QIVTSNALAAFGRDGADIAIRHGLG-RYPGLQSEHLLTVEVVPVASAGLVAKLGMPAGAL 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +   +       +      + A     +G PR      +    ++Q    G G  LL
Sbjct: 186 DLLRWPRVH---DEARSGWQLWFAAQGLEDVGMPRGPAF--DDGSLLLQAVAAGQGAGLL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +V+D      LVR+  D     F  Y  +P      GK + FR+++  
Sbjct: 241 PLAMVRDELAAGRLVRLAGDAWLEEFGYYLVWPGRGAMPGKAQVFRDWLLE 291


>gi|187478411|ref|YP_786435.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115422997|emb|CAJ49527.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 317

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 64/283 (22%), Positives = 123/283 (43%), Gaps = 10/283 (3%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           +A + SFT AA++L +S+S IS ++  LE  +G+ L  R  R +  TE G+ L   +   
Sbjct: 5   LADTRSFTAAAQRLGVSKSLISLRMKALEQALGVSLLLRTTRSVRPTEAGALLIDRSRPA 64

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              LE +  E++  +  P G+LR+   + LG+  L   L      YPDI +++ L ++ +
Sbjct: 65  LDTLEASFGEVRNLTRAPRGRLRLTAPVALGRQHLGPLLARLGHAYPDIALEVYLSDRFV 124

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           ++  +  D A+R    +  +  + ++L     +  A+P YL     P    EL +H  + 
Sbjct: 125 NLRQEGYDFALRHADQVSDA-YVSKRLCATRAYLVASPEYLARQGRPTHPSELSRHRCLL 183

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNP 253
           +          F+        +       L +N+   + +    G GIA++PD+ +    
Sbjct: 184 YRGDERNPQWSFSPRHGRGAAVHVKPTGSLTINNSELLRESAGNGLGIAMVPDFSLG--G 241

Query: 254 NLVRIMEDV---ITPSFTVYFCYPEALKNTGKLK----AFRNF 289
            L  ++ D         ++Y   P +   T   +    A  ++
Sbjct: 242 ELEAVLPDWDCYAGFGRSLYLLKPFSATPTEAHRLVEQALIDY 284


>gi|237801384|ref|ZP_04589845.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024243|gb|EGI04300.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 265

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 11/267 (4%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
           ++SR+++ LE ++G++L +R  R ++LT +G         +    ET +  L+  +   S
Sbjct: 2   AVSRRLAALENDLGVRLVHRTTRSVSLTPEGEVFLPHAKTMLDANETARATLKADAGTAS 61

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G LR+      GQ ++   L   +L  P + I L L +  +DI+    D AIR+   I+ 
Sbjct: 62  GILRVTAPSVFGQTVIMPMLPALMLENPALSIDLTLSDSIVDIAGQGIDVAIRIA-TIRD 120

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
           S+L+ R L        A+P YL     PL + EL  H  I    +       F       
Sbjct: 121 SALVARSLAPNPRVVCASPDYLVRRGMPLVLDELRHHQCIALQAM------PFWSFTRHG 174

Query: 213 RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI-MEDVITPSFT 268
            P+    +     NS  ++   C  G G+A+L  + V+      +L R+ +EDVI    +
Sbjct: 175 EPVTVRALGSFSANSVEAVRTACRQGMGLAMLTYWDVQQEINEGSLRRVDLEDVIPEQLS 234

Query: 269 VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V    P   +   +++ F + +  + +
Sbjct: 235 VTAVLPTRQRVPHRVRLFIDRLEAELK 261


>gi|153002459|ref|YP_001368140.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151367077|gb|ABS10077.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 309

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 126/301 (41%), Gaps = 8/301 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F  VA  G+ + AA ++ +S +S S  I  LE ++   LF R  R L LT Q
Sbjct: 1   MLINDLALFVRVADCGNISAAAAEMDISAASASAAIKRLEKQLDTSLFIRTTRSLRLTVQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L   +  +     K SG L ++ + D G+NL    L EFLL +P +
Sbjct: 61  GERYLIHCRRALSDLALGEQAIASDKGKISGTLSLSVSSDFGRNLFVPWLDEFLLDFPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L L +       D  D A+R  KP Q S+ +   + ++     A+P YL       S
Sbjct: 121 QVRLHLGDNISSFYHDKIDVAVRYGKP-QDSNQVAFPICSVDRVLCASPEYLAKFGVLNS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGI 241
           +++L +HN + +            WL   D    + R++  +  N      ++ V G G+
Sbjct: 180 LEQLVEHNCLFYKL---DGRTHDQWLFRRDGQEFKVRVTGNRSANDAEIAGRWAVAGKGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
                  + D+     LVR++ +       +Y   P     T  +   R  +  + ++ +
Sbjct: 237 VFKSSLDLADDLISGRLVRLLPEYQGEPVDLYLVCPGREHVTPVVLLLREMLRQRCKELQ 296

Query: 299 F 299
            
Sbjct: 297 M 297


>gi|16125722|ref|NP_420286.1| LysR family transcriptional regulator [Caulobacter crescentus CB15]
 gi|221234478|ref|YP_002516914.1| LysR family transcriptional regulator [Caulobacter crescentus
           NA1000]
 gi|13422844|gb|AAK23454.1| transcriptional regulator, LysR family [Caulobacter crescentus
           CB15]
 gi|220963650|gb|ACL95006.1| transcriptional regulator, LysR family [Caulobacter crescentus
           NA1000]
          Length = 298

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 134/290 (46%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L VF  VA   SF  A+E L LS++++S+ ++ LE  +G +L  R +R L LT+ G
Sbjct: 6   DLEGLAVFAKVAELRSFAAASEALALSKATVSKAVTRLELRLGARLLNRTSRRLALTDAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    S V  + E  + E    S  P G +R+A  + LG   L   L  FL  YPD+ 
Sbjct: 66  QALVERASRVLAEAEAAEEEASSQSAAPRGLVRMAAPMSLGVASLAPVLPAFLEAYPDVS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L +  +D+     D A+R+   +  SSL+ R+L  +  H  AAP Y      P   
Sbjct: 126 IDLHLSDATVDLIGMGFDIALRVAD-LPDSSLLARRLRAVQRHVVAAPAYWTAHGRPTHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +T+G       E + +             S L+ N+  +++   + G+G+A+
Sbjct: 185 ADLAEHRGLTYGHQASP--ETWRFQRAGGEEAAVRPRSVLRANNGDALLPPLLAGTGVAM 242

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPD+IV     +  L  ++ +       ++   P       ++    +++
Sbjct: 243 LPDFIVGPALADRRLEAVLTEWSAAPIALHLVMPPGGPRPARVSVLADYL 292


>gi|327396128|dbj|BAK13550.1| HTH-type transcriptional regulator PtxR [Pantoea ananatis AJ13355]
          Length = 298

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 70/276 (25%), Positives = 121/276 (43%), Gaps = 7/276 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V    SFT AA  L +S+S ISR+I+GLE  +GI+L  R  R +TLTE G
Sbjct: 6   NLIAMMLFARVVELKSFTEAARVLGVSKSHISREIAGLEQRLGIRLLQRTTRRMTLTELG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  ++   +  +Q++   P+G +R+   +  G   +   L  FL  +  I 
Sbjct: 66  QAYYPFCVRMLDEMHRAEDFVQQAHQNPAGNVRLQAPVTYGCQCIVPLLNRFLRGHLHIN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L + + +   D  D AI +R          R L  IH   YAAP YL         
Sbjct: 126 VDLSLTDNNDETLGDGVDIAIVIRAHAPRQGNF-RVLSDIHWGLYAAPDYLAQHPAISHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L +H+L+ F          F         +     S  + N+ ++++   + G+GIA 
Sbjct: 185 RLLPRHDLLMFHGPAHTAALPFR---RDKLRLAVDVRSRFRANNSMALLNAALAGNGIAY 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           LP Y+V++      +V+++ +        Y    + 
Sbjct: 242 LPSYMVQEALTQGQIVQVLPEWQMDRLQSYLLRHQD 277


>gi|170737251|ref|YP_001778511.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819439|gb|ACA94021.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 306

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 136/289 (47%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A  GS++ AA  L ++ S+IS+ I  LE    IKLF R  R LTLT++G 
Sbjct: 9   LTGLIAFSRAASLGSYSAAARALGVTPSAISKSIQRLERHFEIKLFNRTTRSLTLTQEGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH  T  +  ++E  +     +  +P+G L++   + +G +L+   L  F   +P + I
Sbjct: 69  DLHERTLRLLSEMEAIEQAAASARSEPAGILKVTAPLPIGVHLIAPALPAFRQRFPKLSI 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D+  +  D A+R+   +  S L+ R L   ++ AYA+P YL     P    
Sbjct: 129 DLRLGDHFVDLVGEGIDVAVRVGD-LTGSRLVSRALSPHYIGAYASPDYLAKRGVPRHPD 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ + F       +  +   AT + P+     + + V++  ++      G G+ + 
Sbjct: 188 ELVDHDCVNFRFQSSGQVLRWT-FATDEGPLSLTPDADIVVDTSDAVAAVMAAGGGVGIS 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y+         LV I+ + + P  T+   +PE+ +++  +K    ++
Sbjct: 247 PTYVAASYVRRGELVPILTEFVEPRSTITALWPESRRSSPNVKVLLAYL 295


>gi|127513692|ref|YP_001094889.1| DNA-binding transcriptional activator GcvA [Shewanella loihica
           PV-4]
 gi|126638987|gb|ABO24630.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 303

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 110/290 (37%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L ++T+       L   L  F    PDI +
Sbjct: 68  GYFLDIKDIFVQLADATDRLLARSA--IGSLTVSTSPSFAIQWLVPRLANFSENNPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI          L   KL    +    +P  L   +      
Sbjct: 126 RIKAVDDETSSLTDDVDVAIYYGMG-NWPGLRADKLRNEVLIPVCSPMLLSGPKPLSQPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKHHTLLHDSSR----HDWQAWFRQCGINDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV    +V+      Y    +     GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWML 289


>gi|254292876|ref|YP_003058899.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254041407|gb|ACT58202.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 313

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 120/297 (40%), Gaps = 10/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AAE+L+++  +IS+QI  LE   G  LF R  R + LT+ G 
Sbjct: 14  LNALRAFEAAARRLSFTKAAEELNVTPGAISQQIRHLEEFAGAPLFRRTGRQVLLTDVGE 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               + +  + +L      L+    +   +L I+         L   L +F  L+P+ ++
Sbjct: 74  ATLPLLTNAFEQLAEATHVLRAPKRRN--RLMISCAPSFAAKWLAHRLDKFQHLHPEAEV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D   +D +    D AIR         L   KL++  +    +P  L+     L+  
Sbjct: 132 WVSADIAVVDFAGPEIDLAIRYGGG-NYDGLRIEKLMSEEVLPVCSPTLLEGDHPLLTPA 190

Query: 185 ELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H L+     +  P C +  +WLA  D   G       + N    ++     G G+A
Sbjct: 191 DLKHHALLHDESPENDPSCPDWASWLAARDVE-GVDSSRGPRFNQSAVVVDAAASGRGVA 249

Query: 243 LLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L    I     ++  L+    D      F  +  +P     +   + F  +I  +A+
Sbjct: 250 LAKKAIAAGDLESGRLIAPFADGTNEIDFAYWTVWPRGRTQSPIAREFIKWIKEEAQ 306


>gi|194289221|ref|YP_002005128.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223056|emb|CAQ69061.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 307

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 129/296 (43%), Gaps = 11/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L  F   AR  SFT AA +LH++Q ++S+Q+  LE  +G++LF R  + L LT  G
Sbjct: 7   SLTELHAFEAAARHNSFTVAARELHVTQGAVSKQVRSLEAYLGVELFQRVRQRLVLTPAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     +   ++LE   +EL     +  G L IA+   LG   L   L +F   +P++ 
Sbjct: 67  ERYLERIAPSLNELEAATVELMAGQGRG-GVLHIASMPTLGAKWLIPRLPQFFARHPEVT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--REPL 181
           ++ +   +  D S    D AIR    +   SL    +    +     P  L +       
Sbjct: 126 LEFVPHAQGYDFSEPDLDAAIRFGDGVWPGSL-ADYMTGREVLPVCRPGLLASEPDGVAP 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L ++ L+     +P+   D  W AT+  P      S  + + +  + Q  + G GI
Sbjct: 185 TPAALLRYPLLHHT-TVPEAWPD--WFATLGLPT-RDAWSGARFDQFSLLTQAALSGLGI 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+P  ++++      LV      +      Y CYPE  ++   L+ FR ++   A
Sbjct: 241 ALIPRCLIEEELATGALVVAHPAQVLAKKGYYLCYPEQKQHLPALRTFRAWVMEGA 296


>gi|238789240|ref|ZP_04633028.1| Transcriptional regulatory protein [Yersinia frederiksenii ATCC
           33641]
 gi|238722772|gb|EEQ14424.1| Transcriptional regulatory protein [Yersinia frederiksenii ATCC
           33641]
          Length = 309

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +++ L  F VVAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  T+ G
Sbjct: 16  NFNDLISFLVVARERSFTKAAAKLGVSQSALSHSIRGLEERLELRLLTRTTRSVAPTQAG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            KL       + ++E     L E   +P+G +RI        ++L   L+ FL  Y DI 
Sbjct: 76  EKLANSLGPRFAEIENELDALSEMRDRPAGNIRITAGEHAVDSVLWPVLRSFLTEYADIN 135

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +DN   DI     D  IRL + +    +  R    + M   ++P YL     P   
Sbjct: 136 VEITVDNTLTDIVAGRFDAGIRLGEQVAKDMVAVRIGPDMSMAVVSSPSYLAKYGIPTIP 195

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I     +P     + W    +    + R+   L  NS    +    +G G+ 
Sbjct: 196 ADLQNHRCINM--RLPTMGGLYAWEFEKEGCQLKVRVDGQLTFNSLRQRIDAATIGFGLT 253

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P+  V+    + +LVR++ +   P    Y  YP   ++T     F   +
Sbjct: 254 FVPEDSVRAEIASGSLVRVLTEWCEPFPGYYLYYPSRRQHTTAFSLFIEAL 304


>gi|170700036|ref|ZP_02891060.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|172062405|ref|YP_001810056.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|170135051|gb|EDT03355.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|171994922|gb|ACB65840.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 309

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 121/272 (44%), Gaps = 9/272 (3%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            QL ++ S ++ +I  LE  V   LF+R  R + L++ G   +R  +EV  ++     ++
Sbjct: 24  RQLGVTSSVVTNRIQQLEKFVNAPLFHRSTRHVRLSDVGETFYRECAEVVGRVNELTDQM 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E    P+G+LRI        +     L EF   YP IQ+ +I++++ +D   +  D A 
Sbjct: 84  RELRATPTGRLRIQMLPGFALDHFGVPLAEFNRRYPGIQLDIIVNDRVVDPVEEGFDIAF 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           ++  PI S SLI+R+L  +     A+P YL     P   +EL +H    +     +    
Sbjct: 144 QIFPPI-SESLIERRLFVVRRLFCASPAYLDAHGAPQHPRELLQHTTALYSGYPSRN--- 199

Query: 205 FNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIME 260
             W  T    + E  +  + + NS   + +Y + G G+  LP  +  +      LV I+ 
Sbjct: 200 -RWTMTRGDEVVEMELPGMIRSNSVHLLREYALTGGGVVCLPTLVASEALVAGRLVPILT 258

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           D      +    YP   +   K+KA   F+  
Sbjct: 259 DFQIAPLSFAAVYPATQRQALKVKALVEFLAE 290


>gi|260778774|ref|ZP_05887666.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604938|gb|EEX31233.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 308

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 112/298 (37%), Gaps = 12/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F ++ +      A  +L LS +S++ ++  LE   G+KL  R  R + LT+ G 
Sbjct: 4   LADMELFTLIVKHQGLASAGRELGLSPASVTSRLQALEERYGVKLLNRSTRHIALTDSGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    ++   +   + +L  ++V+  G++RI+   D+G+  +   +  F   YP +  
Sbjct: 64  NYYESCLQILESVREAEAKLHNTAVQIEGQIRISAPKDIGKQFVMPAIDTFQQQYPKVVP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L +     S    D  IR   P   S +I ++L        A+P Y+ N   P   +
Sbjct: 124 HLLLHDNLSSWSESNIDLQIRYGSP-PDSGMIAKRLAVSERVLVASPAYIDNHGLPNDPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  ++      +    +      D       +S    +    I  +   G GIAL 
Sbjct: 183 QLRSHQCLSLLRNEQEMKLWYFQHKESDETSSHQVLSFRCSDDGEVIRHWAKQGVGIALK 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTV--------YFCYPEALKNTGKLKAFRNFIF 291
               V+ +     L  ++ D                Y  Y +      +L  F   + 
Sbjct: 243 SRLDVEADVKAGTLQILLPDFRVDFKPFSSNNDSELYAVYRDRKYQPKRLTLFLKHLI 300


>gi|330879119|gb|EGH13268.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 294

 Score =  208 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 119/290 (41%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  G 
Sbjct: 4   IEDLRLAVTLSRCESLSAAARVLNVSPPALSMRLRKLETQLGITLANRDARRLSLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R ++ +  +LE      ++   +  G LR+A     G+  +   L  F  L+P + +
Sbjct: 64  RFARESAHLLEQLEALPESFKQRDERLVGTLRLAAPFGYGRQRIAPLLARFAKLHPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L           +D  I +   +  S  I R L   H    A+P YL     P +  
Sbjct: 124 HLDLRETPW-PDRHDSDAVIHIGN-LNDSLWIARPLAQNHRWLCASPAYLDQHGVPSTPD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  I   +          W  +        RI   L  N      ++   G GI L
Sbjct: 182 ELASHRCICIRENDEDVTL---WHLSKGHAKKTLRIEPALLSNDGSVARRWAEQGLGIVL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V +   + NLVR++ D    S  +    P     + +++A   F+
Sbjct: 239 RSQWDVSEAIASGNLVRVLADWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|162146089|ref|YP_001600547.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161784663|emb|CAP54201.1| putative transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 289

 Score =  208 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 68/272 (25%), Positives = 127/272 (46%), Gaps = 10/272 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++ S++S+ +S LE  +G +LF R  R L LT +G+  +  +  +   L   +     +S
Sbjct: 1   MTPSAVSKLVSRLERRLGTRLFNRSTRQLQLTPEGAAFYDRSVRILADLAEAEQ-CASAS 59

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             P G++RI   + +G+  L   +      YPD+ + ++L +  +D+  D  D AIR   
Sbjct: 60  ALPHGRVRINVNVPMGRRFLLPLVPALSARYPDLVLDIVLTDTVVDLMEDRTDIAIRHG- 118

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
           P++SS L+ RKL  + M   AAP YL     P +  +L +H  I  G    +  + +  L
Sbjct: 119 PLKSSRLMARKLGRMRMRLVAAPAYLARYGMPGTPADLRRHRRI--GSSYWRMHDGWPQL 176

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITP 265
                P+       +Q +   +++Q  + G G+A L  + V ++     LV ++E   +P
Sbjct: 177 DD-GGPVPVLPPGIVQASDGDAVLQLAIAGMGLAYLAAFQVDEHIAAGKLVPVLEAFHSP 235

Query: 266 SF-TVYFCYP-EALKNTGKLKAFRNFIFLKAR 295
           +    +  Y     K   +++A  +F+    R
Sbjct: 236 ALVDTHAVYLGHHGKLPARIRAVLDFLQENMR 267


>gi|311104359|ref|YP_003977212.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310759048|gb|ADP14497.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           36 [Achromobacter xylosoxidans A8]
          Length = 321

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 8/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +    V+A +GS+T AA +L +S++S+S++I  LE   G+ L  R  R + LTE G 
Sbjct: 11  WSHIHCLGVLADTGSYTAAARRLQISKASVSQRIVELEQAAGVPLVRRTTRSVGLTEAGQ 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L   T+  + ++E     +++ S  P G L +   + LG+ ++   + EFL  +PD++I
Sbjct: 71  SLVDQTAAAFLRIEEGFSAVRDLSEGPRGVLSVTAPVALGRQVIAPLIPEFLKRFPDVRI 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L +    ++ +  D AIR    +  +  +   +        A P YL     P    
Sbjct: 131 QLELSDHLASLATEGFDLAIRHVAGVPDTH-VASVICETRSVLVATPEYLARNGTPKIPM 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  HN + +          F      D+ +  P       N+   + +      GIALL
Sbjct: 190 DLAAHNCLHYLRRSGSATWSFESRDG-DKRVAVPVRGSFTANNSEVLREVAAGSLGIALL 248

Query: 245 PDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           PD+       +  LV ++         +  +Y   P   +    + +F  ++   
Sbjct: 249 PDFSANQALRSGALVEVLHGWRVVGDYAERLYAVRPYTPRVPLTVSSFVGYLREA 303


>gi|254505570|ref|ZP_05117717.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219551687|gb|EED28665.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 297

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 128/294 (43%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +W     F  +A  GS + AA  L +SQ ++SRQ+  +E  +G  LF R  +GLTLT
Sbjct: 1   MNSNWQWWHYFLAIAEHGSLSQAAISLDVSQPTLSRQLQLMEKRLGQPLFDRSTQGLTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L      +    E         +   SG++R+A    +  + L   L  F+  YP
Sbjct: 61  GFGESLLEECRNMQASAERLARLAAGQATSLSGRIRLAANELIALHYLPKILPLFMDTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ +++ + N+   +    AD AIR+  P Q   LI R+L  I +  +A+  YL+    P
Sbjct: 121 EVSLEVEVSNQVSSLDKRDADVAIRMFPPTQQD-LICRRLFDIPLGFFASSDYLRVNGTP 179

Query: 181 LSIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            + Q L +H +I +       K  ++  W    ++ +        + +     ++     
Sbjct: 180 DTAQALFQHRIIGYDRDRQFEKGGQELGWQIRNEQFL-------FRTDFMPMHLELARNH 232

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI +   ++ ++  +L  I   +  P   +Y      +++  K++   +F+  
Sbjct: 233 GGIVVSHKHLCEE-LSLQEIKVGIDIPKLPLYLACHRDVQHNKKIRVLMDFLAE 285


>gi|170022911|ref|YP_001719416.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|169749445|gb|ACA66963.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           YPIII]
          Length = 303

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGALFLSHARQIIGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P+YL+    P
Sbjct: 121 QITLELNTDDLNIDLLEQRTDIAIRIGA-LRDSTIHARLLGASRVRLLASPNYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I+ L  H+L+ F    P+ +  ++             I  L  +S  ++    + G G
Sbjct: 180 HTIEALADHSLLGFTQ--PEFLNQWSLPHLPGGRSSI--IPNLAASSGETLRLLALQGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L D++ +++     LV ++ D I  ++  +   Y    +   ++  F +++  + +
Sbjct: 236 IAELSDFMTREDQLAGRLVEVLADQILETWQPINAVYYRNTQLAARITCFLDYVSEQIK 294


>gi|153008608|ref|YP_001369823.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560496|gb|ABS13994.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 312

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 116/300 (38%), Gaps = 12/300 (4%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ D      L +F  + R  S   AA +L ++ S+IS ++  LE ++G++L  R +R L
Sbjct: 1   MNLDRSALADLNIFVTIVRRKSMKMAAIELGVTTSAISHRMKKLEADLGVRLLNRTSRSL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           T TE G+ L          +      L      PSG++R+    D  + ++   L  +  
Sbjct: 61  TPTEAGAALATQLESGLRTIGEALEALTSQRDFPSGRIRLNALRDAARLIIAPILPRYTQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPD+ + + +D++ +DI  +  D  IR    +    +       +      +P  +   
Sbjct: 121 TYPDMHLDITIDDQMVDIVAEGFDAGIRYGDRVPQDMIGVALTGPLQWIVVGSPALISRA 180

Query: 178 REPLSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
             P +  +L +   I    GD      E  N  +     +  P    +  N     ++  
Sbjct: 181 GCPETPDDLLRLPCIETRLGDNSRYAWELGNGASLRRVDVKGP----ICANETEQAVEAA 236

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G G A   + +VK   D   L  ++ D  +    +   YP   +    L+   + I  
Sbjct: 237 LGGIGFAYCLEPLVKNYLDAGALEAVLPDWASEGPPLTMYYPSRRQVPSGLRRLIDLIRE 296


>gi|307320054|ref|ZP_07599475.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306894269|gb|EFN25034.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 323

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 129/289 (44%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF    R  +FT AA +L ++Q+++S  I GLE ++G+ LF+R  R + LTE G K H
Sbjct: 14  LIVFEAAGRHQNFTRAASELGMTQAAVSYAIRGLENQLGVPLFHRVHRAVQLTEAGEKFH 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    +++ +  +++    + +  + +A +       +   L       P+I +++ 
Sbjct: 74  ADVSVGLARIQKSAEDIRAKGRETN--VTLAASTAFASMWMLPRLARLREDLPEIDLRIQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +D+D+  +     IR   P          L    + A A P Y++    P +  +L 
Sbjct: 132 TSVRDLDLDDEPIPLGIRGGDPSHWPRYHAAVLADEVIQAVATPAYIETHGLPATPADLI 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HNLI   + + +  +   W A+        +   L +N Y+ ++Q  + G GIAL  ++
Sbjct: 192 RHNLIHLEEPVRRACDWTEWFASAGLAYPT-QGKRLAINDYVLVIQAVLAGEGIALGWEH 250

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +      +  LV +   V+      Y  +P + +   + +  R+++  +
Sbjct: 251 LTARQVRSGALVPVGGHVLRTGQAFYVVWPRSRELNSQARRIRDWLLEE 299


>gi|254295506|ref|YP_003061528.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
 gi|254044037|gb|ACT60831.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 299

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 129/297 (43%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW+K R F V A  GS + AA  L ++Q ++SRQ+S  E E+G+ LF R  +GL LT
Sbjct: 6   IKFDWNKARAFLVTAEEGSLSAAARALDMNQPTLSRQVSSFEEELGVSLFERVGKGLELT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L      +        +       +  G + I+ +  +   +L   + +     P
Sbjct: 66  PHGLQLVDHVRAMGEAAVQFSLTATGQIDQIEGVVAISASDAVSTYILPDMMVDIRRAEP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++++  N   D+    AD A+R  +PI+   LI RK+  ++   YA P YL +   P
Sbjct: 126 GVILEIVATNTLSDLRRREADIAVRHAQPIE-PDLIGRKVRCVNCWLYATPDYLASIGAP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L+  + I FGD      +    L  +  P   P    L   +     +    G G
Sbjct: 185 ASLADLNNADFIGFGD----NTQLLQGLNAIGIPAS-PDSFKLSCENGTVSWELVRKGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I ++ + I  + P L+R+         + +    + L+   +++   + +      +
Sbjct: 240 IGIITEDIALNFPELIRVPVPQTPIPVSYWLVAHKELRTNRRIRFVFDRLVEAFAKY 296


>gi|325002746|ref|ZP_08123858.1| LysR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 305

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 130/297 (43%), Gaps = 11/297 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   + D LR F  +A +G+ T AA    +S S++S++++ LE  +G +L  R  R LTL
Sbjct: 1   MDLPELDDLRFFTGIAAAGTLTEAARVWGVSVSAVSKRLARLERRLGARLVNRSTRRLTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G +      +V  +++  + ++   S +  G++ +  T+  G++ L   L  F   +
Sbjct: 61  TDEGRRYAEGAVDVLGRIDDLEDDIGRRSARLHGRIAVHATMGFGRSHLAPLLGSFGAAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD++I L L +  + +     D A+R   P+  S +  R L+       AAP Y+    E
Sbjct: 121 PDLRIDLELSHLPVHVGGTGYDFAVRAG-PLPDSRMHARPLLRNRRVVCAAPSYVARRGE 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P ++ EL +H+ I   +         +W       +   R+      N       +C+ G
Sbjct: 180 PRTLGELAEHDCIVIRE---NDTAYAHWRFGTGADVAGVRVTGSTTCNDGEVATAWCLAG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G+ +   + V    +   LV+++  + TP   +            ++ A  + +  
Sbjct: 237 RGLVMRSLWQVAPLLEAGELVQVLPGIPTPPADLVAV--HDASPPRRVVAALDHLVA 291


>gi|167719184|ref|ZP_02402420.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 303

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 107/267 (40%), Gaps = 8/267 (2%)

Query: 28  HLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQES 87
            +S   + R+I  LE  +G+KL YR  R L ++E G+        +  +    + E+   
Sbjct: 27  GVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSEDGAAFLERCRGLLTEWAQAENEVVAG 86

Query: 88  SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLR 147
                G L ++     G+  +      F+   PD+Q+   L ++ +D+  +  D +IR+ 
Sbjct: 87  RRAVGGHLIVSAPAAFGRKHVAPLAPAFVADKPDLQMSFNLTDRVVDLVREGYDLSIRIG 146

Query: 148 KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNW 207
             +   + +  KL +        P Y +    P ++ +L  HN + F     +  ++  W
Sbjct: 147 GAV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPRTLDDLASHNCLAFNL---QGGQNRGW 202

Query: 208 LATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVI 263
               +  +   R+   L  N    + ++   G G+     + +        L  ++++  
Sbjct: 203 YFRRNGKLVTMRVAGTLDCNDGELLHRWVSEGLGLGWRSTWEIAQQLARGELETVLDEYA 262

Query: 264 TPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P + +   YP+      +++ F +++
Sbjct: 263 LPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|171058825|ref|YP_001791174.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170776270|gb|ACB34409.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6]
          Length = 321

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 121/301 (40%), Gaps = 8/301 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    + VF   A  GS    A  L++S  + S+ ++ LE  + ++LF+R  R + L
Sbjct: 1   MAINELRAISVFVTAAELGSLRKTAAALNISPQAASQALAQLEQHLDVRLFHRTTRSMAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G +           L      ++ +  + +G LRI       Q LL   L EF + Y
Sbjct: 61  TDEGQRFLDEAQPSLLGLRRALQTVRHAKDEIAGPLRIVGPRATFQPLLWRLLDEFCVRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI   + L+++  +   D  D   RL        +I R+L  + +   A+P YL     
Sbjct: 121 PDIVPDVQLEDRVGNWVEDRVDVGFRLGIS-PHEGVIARRLFPVQLVLCASPGYLLAHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P S+  L  H    + +  P       W   V D  + +P +  L  N  +  +   + G
Sbjct: 180 PDSMAALPTHRCSVYRN--PGTGRVVPWRFKVGDEEVEQPVVPALSTNDEVLELHAVLAG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             I  L             LV ++ D++   ++ +  Y        +++AF +    +  
Sbjct: 238 KVIGQLAGVTAAPYIRAGQLVPLLVDLVPDRYSYFVYYGSRSAQPARVRAFVDLAVARLV 297

Query: 296 D 296
           D
Sbjct: 298 D 298


>gi|311107282|ref|YP_003980135.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761971|gb|ADP17420.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           134 [Achromobacter xylosoxidans A8]
          Length = 311

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 129/288 (44%), Gaps = 11/288 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VAR+ SF+  A +  +  SS++RQI  LE+E+ + LF R  R L  TE G  
Sbjct: 8   ESLSIFVDVARAQSFSEVARRRGMVASSVARQIGALESELKVPLFVRSTRALMPTEAGEV 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+    ++ H +   + E+        G LR++      +  +   L++    +P +Q++
Sbjct: 68  LYERAVKILHDMTEARSEVISLEQTVQGLLRVSCLPAFARRYVVPMLQQLGERHPQLQVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  + +D  ++  D  +R+ +    SSLI +++ +      AAP YL+    P ++ +
Sbjct: 128 LELTERVVDPVVERMDVVVRVGQQ-PDSSLIGQRIGSHRYLICAAPSYLERHGVPRTLAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H LI              W    D    +     L+ +   +     + G GIAL+P
Sbjct: 187 LSRHRLI----DRRHSTSVRGWRELGDGQWAQDARFVLECDDCDARRFAALEGLGIALMP 242

Query: 246 DYIVKDN---PNLVRI-MEDVITPS-FTVYFCYPEALKNTGKLKAFRN 288
           ++    +     LV++ +ED   P    +Y        N  +++AF  
Sbjct: 243 NWSAGADIGAGRLVQLTLEDASPPPESGIYLLRAMPRAN-ARIRAFTE 289


>gi|238787690|ref|ZP_04631487.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC
           33641]
 gi|238724033|gb|EEQ15676.1| Transcriptional regulator, LysR family [Yersinia frederiksenii ATCC
           33641]
          Length = 319

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F  +  +GS + AA +L  SQ ++SR++  LE  +G+KL  R    + LT+ G 
Sbjct: 12  IELMQTFIRIVEAGSLSGAAARLGTSQPTVSRRLQTLERLLGLKLLQRTTHIMKLTDDGE 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    E+       + +L+ ++ +P G LR+      GQ+ L   LK++L  YP + +
Sbjct: 72  RCYSHAKELVESWNAMEDDLRGATDEPRGLLRVLVPHAFGQDQLIKPLKDYLNRYPKMSV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +  L+++  D   +  DCAI++   +   S++   L  +     AAP  L N R P   +
Sbjct: 132 EWTLNDRRPDFIAEGIDCAIQVGA-VTDPSVVAILLAEVPRIVIAAPELLSNKRIPTHPE 190

Query: 185 ELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L   + I        + +        + R   EP+   L  +S  ++    + G G  +
Sbjct: 191 QLLDFHWIALNSFYRNEVVLSHKTNGEIQRFSIEPQ---LSTDSLYALRNAALAGLGAGI 247

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              +++ D+     LV +  D       +Y  YP A     +L AF + I  +A
Sbjct: 248 ASTWVISDDLAQGRLVHLAPDWHGLPLPIYLVYPHASFYPARLCAFLD-IMRQA 300


>gi|330817350|ref|YP_004361055.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327369743|gb|AEA61099.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 295

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 138/292 (47%), Gaps = 8/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ LR F  VARSGS T AA +L  SQS++SR+I  LE  +G+ LF R   G  LT++
Sbjct: 1   MDWNDLRYFLSVARSGSLTQAAGELKTSQSTVSRRIGELEGSLGMSLFARSQTGYVLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++ R   +V   +   +         P G +R+AT+ +L  +L+   +  F   +P I
Sbjct: 61  GREVLRHAEQVEDSILALERGAAGIEKSPVGTVRLATSENLATDLVIPAMPAFRERFPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I      ++    AD A+R+ +P +  +L  R++  +    Y +  YL      + 
Sbjct: 121 CLEIITSTVTAELGRREADIALRVVRPTR-GNLKVRRIGHMRYSVYGSRDYLARHPA-VD 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L   + I + D     +    WLA   R   E ++  L  +S  + +     G G+A
Sbjct: 179 GEPLGGRHFIAWDDG-HAHLPAAAWLA---REHPEAKV-ALVTSSLPTQIAAVRAGLGLA 233

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++PD++  D    VR++      S  ++      L  + +++A  +F+  + 
Sbjct: 234 VIPDFLAVDE-AFVRVVPAERMFSNELWLVTHADLVASARVRAVADFLADQV 284


>gi|221202041|ref|ZP_03575077.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD2M]
 gi|221204828|ref|ZP_03577845.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD2]
 gi|221175685|gb|EEE08115.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD2]
 gi|221178124|gb|EEE10535.1| putative LysR substrate binding domain [Burkholderia multivorans
           CGD2M]
          Length = 300

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F  AA     S S +S  +  LET++G++L +R  R +  T
Sbjct: 1   MQADLGDLNAFVAVARAKGFREAARTTGTSASGLSEAVRRLETQLGVRLLHRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L         ++E     +     +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGQRLLARLRPALSEVEAALDVVNSFRERPAGTLKLNVPLSAARLVLPSIVPRFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           +I+++L+++   +DI     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 EIRLELVVEESFVDILEVGCDAGIRYDERLEQD-MIAIPIGPRSQRFATAAAPDYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P    EL  H  +          + +F     V R      +      +   +++    
Sbjct: 180 RPNHPSELLHHACLRGRFASGSMPLWEFERDGEVVRVDPSGPLVVQIGGAVDLVVEAARS 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI  L +  ++   D+  L  ++E    P    Y  YP        L+AF +FI  +
Sbjct: 240 GLGIVHLYEEWLRPHLDSAALEPVLERWWRPFSGPYLYYPGRRLVPAPLRAFIDFIKAE 298


>gi|218672271|ref|ZP_03521940.1| transcriptional regulator, LysR family protein [Rhizobium etli
           GR56]
          Length = 298

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 118/296 (39%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V  SG F  A+  L + +S + R++S LE  +G  L  R  R   +TE G
Sbjct: 3   DLNDYYYFAAVVSSGGFASASLDLKIPRSKLIRRVSRLEDGLGALLIERSTRHFRVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  +  + E+   P G +R+A  + L    + G L EFL  YP I+
Sbjct: 63  QAFYERCQTILLEADRAKSIVTEAQSDPQGVVRMACPLGLVDISVGGILPEFLERYPKIK 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+I  ++  D+  +  D  +R   +P   +SL  RKL        A+P  ++       
Sbjct: 123 LQIIGSDRRADLINERIDLEVRATNEPETQTSLTMRKLDRARRILVASPSLVERSGGLNC 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL     +     +      +  +   D          L   S  +I+     G G  
Sbjct: 183 VDELADQPTLAMTSWV--TFHTWELIGPNDDKRVIRHQPRLTCRSMTAILDAARAGLGFG 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LL +   + +     LVR++ +  +     Y  +  A      ++   +F+  K+R
Sbjct: 241 LLLESACEADLQAGRLVRVLPEWQSEESQFYIVFTTAKGMPPAVRVLIDFLVEKSR 296


>gi|34496175|ref|NP_900390.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34102029|gb|AAQ58396.1| probable transcriptional regulator LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 288

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 132/288 (45%), Gaps = 7/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR+G+   AA+QL + Q+++ R++   E E+G +LF R  +G  L+E 
Sbjct: 1   MNWDNARYFLSLARAGTLRAAAQQLGVDQATVGRRLQAFEAEIGSRLFLRTPQGYQLSES 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L      +    +    +   S  + +G +RIA T  + +  +   L E    +P++
Sbjct: 61  GAMLLADAERMEAAADAFSRKAAHSDRQLAGPVRIAATDTVAEAFIIPALAELSRRHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +  L+      D++    D AIR  +P +   L+ RKL  I M  YA+P YL     PL 
Sbjct: 121 EFTLLTGLSIRDVAAGEVDFAIRSLRPDKGEVLV-RKLAAIDMSLYASPDYLARRGRPLP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H L+ F    P+     +W       + + RI  LQ NS LS+ Q  + G GIA
Sbjct: 180 GDGFAGHELLMF----PRDTVPRHWQRLCGESVDQARI-ALQANSQLSLRQAALAGMGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +L  +I   +  L R+  D  T    ++      L+   +++     I
Sbjct: 235 MLSCFIADRDAGLERVWPD-RTDPVDMWLVLHPDLQKVARVRTAVEAI 281


>gi|332532484|ref|ZP_08408362.1| glycine cleavage system transcriptional activator GcvA
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038127|gb|EGI74574.1| glycine cleavage system transcriptional activator GcvA
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 300

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 123/290 (42%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AAE+L+++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALKAFEAAARHLSFTKAAEELYVTQAAVSHQIKTLEEHLGLKLFLRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +L        G L ++ T       L   L  F  L+P+I +
Sbjct: 68  GYFLDIKEIFTQLIDATEKLLARGA--KGSLTVSLTPSFAIQWLVPRLSLFNELHPEIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D AI   +    + +   KL T ++    +P  L   +      
Sbjct: 126 RIKAQDQDENSLTDDVDIAIYYGRG-HWNGVQAYKLHTEYLVPLCSPMLLSGLKPLDQPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   D   K  +   W+ T      +     +  +    ++Q  V G G+A+ 
Sbjct: 185 DLAHHTLLH--DTTRKNWK--TWMKTAGVRNIQVNQGPI-FSHSSMVLQAAVHGQGVAIG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + K   D   LV      +      Y    E+    GK+ +F+ ++ 
Sbjct: 240 NSVLAKPDIDAGRLVIPFNHSLESKNAYYLVLRESQTELGKIVSFKEWML 289


>gi|206580286|ref|YP_002238472.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288935459|ref|YP_003439518.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206569344|gb|ACI11120.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288890168|gb|ADC58486.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 301

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 128/305 (41%), Gaps = 16/305 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +R+F  V   GS + AA  L + Q ++S +I  LE  +G +L  R+ R ++LT
Sbjct: 1   MDL-FSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  +  +       E      +E+     GK+RIA     G++LL   L +    +P
Sbjct: 60  HSGNVFYERSKTAVQAAEHALSVNEENQG-LQGKIRIAAPYSAGESLLMPALLQLQNEHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q+ +I +++ ID   +  D ++RL   +     + R L  +     A+P  L     P
Sbjct: 119 ELQVDVIFNDRVIDPVTEGVDLSLRLGD-VSEGFFVARPLGAVRRVLVASPALLAKMGHP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + + L  +       +          +A+ D+ I  P     Q   + S++ + + G  
Sbjct: 178 DTPEALTDYPFAAVSGVF--ASNRIQLIASEDQLINVPVNIQFQSTHWRSVLSWLLAGHA 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA--------FRNF 289
           I +L   + +   ++  L+ ++     P F+ +  +P A   + + +          R+ 
Sbjct: 236 IGVLQSPVCRKEMEDGALIPLLSHYPIPPFSAWLLHPPAGMMSYETRICASLLEGYLRDL 295

Query: 290 IFLKA 294
           +   A
Sbjct: 296 LLEPA 300


>gi|294633908|ref|ZP_06712465.1| LysR family transcriptional regulator [Streptomyces sp. e14]
 gi|292830160|gb|EFF88512.1| LysR family transcriptional regulator [Streptomyces sp. e14]
          Length = 303

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 127/293 (43%), Gaps = 16/293 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA+ GSF+ AA++L  S S +SR ++ LE +VG++L  R AR ++LT+ G +  
Sbjct: 7   MHSFVTVAQVGSFSGAAKKLGSSGSLVSRHVAELERQVGVRLVNRTARSVSLTQPGQRYA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  ++E     + +   +P G L +     +G   L   +  F   +P IQ++  
Sbjct: 67  EFAARILDEIEAEDAGIAQLHDRPEGTLSVICPKWIGSLDLGDAIAAFSAAHPKIQVRFE 126

Query: 128 L---DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L    ++  D      D A   R  ++ SS+  +K+ ++     A+  Y+  C       
Sbjct: 127 LGGMSDRTYDFLDSGFDVAFHTRD-LRDSSVRLKKISSLPFVLCASEDYVARCGALEHPN 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H+ +         + D  W         + + R      NSY+++ +  V G GIA
Sbjct: 186 DLAAHDCLVH-------VNDPVWRIGHGHASTLHKIRNIAFSSNSYIALQKAAVHGRGIA 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LLP     D+     L  ++ D+  P   +Y  Y        K+  F +F+  
Sbjct: 239 LLPQRPAYDDLVSGALQVLLPDLAVPDRPLYAIYGPGQDTPRKVSVFLDFLAE 291


>gi|238797038|ref|ZP_04640541.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC
           43969]
 gi|238719083|gb|EEQ10896.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC
           43969]
          Length = 301

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 128/290 (44%), Gaps = 7/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  +  +GS + AA +L +SQ +ISR++  LE  +G+KL  R    + LT+ G + +
Sbjct: 1   MQTFIRIVEAGSLSGAAVRLGISQPTISRRLQTLERLLGLKLLQRTTHTMKLTDDGERCY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                + +     + +L+ ++ +P G LR+      GQ+ L   LKE+L  YP + ++ I
Sbjct: 61  THAKALINSWNIMEDDLRSATDEPRGLLRVLVPHAFGQDQLIKPLKEYLHRYPKMSVEWI 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+++  D   +  DCAI++   +   S++   L  +     AAP  L +   P   ++L 
Sbjct: 121 LNDRRPDFIAEGIDCAIQVGA-VTDPSVVAILLAEVPRIVVAAPELLADKPIPTHPEQLQ 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +        C E      T            L  +S  ++    + G G  +   +
Sbjct: 180 DFQWLALNTFY--CNEVVLSHKTDGEISRLAIQPQLSTDSLYALRNAALAGLGAGIASTW 237

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++ D+     LV +  D       VY  YP A     +L+AF + I  +A
Sbjct: 238 VISDDLAQGRLVHLTPDWHGLPLPVYLVYPYASFYPARLRAFLD-IMRQA 286


>gi|241666768|ref|YP_002984852.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862225|gb|ACS59890.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 310

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 126/301 (41%), Gaps = 13/301 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++VF      GS   AA +L  S ++ISR +  LE  VG++L +R  R L L+E
Sbjct: 1   MDRIDAMKVFVTAVEEGSLAGAARRLKRSPTAISRALGLLEQHVGVELLHRTTRSLKLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V   LE   +        P G L I+    LG+ +L+  L  FLL   +
Sbjct: 61  AGQRYVEACRRVLVDLEEADMIAGSERSSPRGTLTISAPPILGEEVLRPILDSFLLENAN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L++ ++ +++  +  D A+R+     S+ +  R    +     AAP YL +     
Sbjct: 121 VSVRLLMLDRFVNLVDEGVDVALRIGNLADSTHMSTRIGGDVRRVVVAAPQYLDSRAAIT 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVL 237
              +L +H+LI F +   +      W     +    PR         VNS  +       
Sbjct: 181 EPSDLSRHDLIAFSNFGLES-----WSFAPAKGTSVPRTVHFTPRYLVNSVRAAAASAAE 235

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+  L  Y V +   +  L  ++     P+  V+   P+      K++ F +F   + 
Sbjct: 236 GMGVTRLYSYHVAEYVRDGRLRVVLHQAEPPALPVHILTPQGRAAVPKVRTFIDFAVPRL 295

Query: 295 R 295
           R
Sbjct: 296 R 296


>gi|70730476|ref|YP_260217.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344775|gb|AAY92381.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 302

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 127/293 (43%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V  +G F  A   L + +S +SR+I+ LE  +  +L  R  R L+LT  G
Sbjct: 3   DLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLNARLLQRTTRQLSLTAVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R    +  + E     +   + +P G+LR+++ + L   LL   +  FL  YP +Q
Sbjct: 63  ERYLRHCQAMLLEAEMADEAVASMASEPRGRLRVSSPVGLAHELLTPLVSSFLEKYPQVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++++L N+ +D+  +  D A+R+R+   +   L+ R+L        A P +L+       
Sbjct: 123 LEMLLLNRRVDLINEGVDVALRVRELGDEDPLLVTRRLRRAQTAIVATPDFLRQYPV-EH 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +  ++  G L    +     L    +       + L ++ ++      + G G  
Sbjct: 182 PEDLRRVPIL--GALEADRLVHLRLLDQQGQACDLALEARLGIDDFIVRRACALAGQGCT 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LP    ++   +  LV+++     P   +   YP        ++A+   +  
Sbjct: 240 VLPMLYCEEELASGQLVQMLPQWSLPGGWLQAVYPHRRGVMPAVRAWIEHLSE 292


>gi|146308176|ref|YP_001188641.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576377|gb|ABP85909.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 294

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 141/291 (48%), Gaps = 10/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ L+ F  VARSGS T AA +L +SQS++SR+I+ LE  +G  LF RH  G  +T++
Sbjct: 1   MDWNDLKYFLAVARSGSLTQAATELAVSQSTVSRRITELEQSIGTILFQRHQTGYFVTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      V   +   +        KP+G +R+AT+ +L  +L+   L  F   YP I
Sbjct: 61  GGELLCHAERVEESIMALERGAAGLDKKPAGSVRLATSENLATDLIIPALPAFRERYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++I      +++   AD A+R+ +P +  +L  R++  +    Y +  YL+     + 
Sbjct: 121 CLEIITSTVTAELNRREADIALRVVRPSR-GNLKVRRIGHMTYSVYGSRGYLERHPH-ID 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L   +LIT+ D     M    WLA             L  +S  + +     G G+A
Sbjct: 179 GEPLGGRHLITWDD-SHGFMPAAAWLAREHPGCKV----ALVTSSLPTQIAAVRAGLGLA 233

Query: 243 LLPDYI-VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++PD++ VK++   + ++      S  ++      L  + +++A  +F+  
Sbjct: 234 VIPDFLAVKED--FIAVIPAEQLFSAELWLVTHADLVASARVRAVADFLSE 282


>gi|206578406|ref|YP_002238343.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206567464|gb|ACI09240.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 298

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 123/289 (42%), Gaps = 9/289 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E   G +L +R  R LTLT  G K+  
Sbjct: 9   QVYLRICELGSLSAAARALGMSRPMVSRYLEQMENWAGARLIHRSTRRLTLTPAGEKVLL 68

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            T  +    +    E Q +   PSG LR+A        L+   L +FL  YP ++++L +
Sbjct: 69  KTRGLTRIADEIAGERQRA--DPSGTLRVACAHFTAMQLISPLLPDFLARYPQLRLELDI 126

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N  + +  +  D AIR+    +  + I R+L        AAP +L+      ++ +L +
Sbjct: 127 NNHPVSLIGERIDVAIRITDNPEPGA-IARRLGLCRSLLCAAPRWLQQHGPLATLDDLQQ 185

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN + +        + + +     +         L       +++  V G GIA+LP+  
Sbjct: 186 HNCLLYSHF---AGQRWQFSDAQGQEASVAVSGNLSAGISSLLLEAAVAGCGIAMLPELE 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +    +  L  ++ D    + +VY  Y         L  F + +  + 
Sbjct: 243 ARSALASGALEVVLPDWTPKALSVYGIYLSRDYQPDGLPLFLDALQRRL 291


>gi|114798673|ref|YP_759051.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114738847|gb|ABI76972.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 310

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 120/296 (40%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AAE+L+++  +IS+QI  LE   G  LF R  R + LT+   
Sbjct: 11  LNALRAFEAAARRLSFTQAAEELNVTPGAISQQIRQLEDFAGTPLFKRTGRSVLLTDAAQ 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               +  E + ++      +Q  +    G++ I++        L   L+ F      I+ 
Sbjct: 71  ASLPLVREAFERIAEAGRVMQAPAR--KGRVMISSAPSFAAKWLAPRLERFQQQNEGIEA 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D    D +   AD AIR  +      L   KL+   +    AP  L+     L  +
Sbjct: 129 WISADMSLTDFNTADADIAIRYGRG-NYDGLKSEKLMDETVLPVCAPRLLEGPNAILKPE 187

Query: 185 ELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H L+     +  P C +  +WL       G       + N  + +++    G G+A
Sbjct: 188 DLRHHTLLHDESSENDPSCPDWTSWLRAHGV-TGVEGSRGPRFNQGILVIESAAAGRGVA 246

Query: 243 LLPDYIVKDNPNLVRIMEDV----ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L    I   +    R++       I   F  +  +P+    + +++AF  +I  +A
Sbjct: 247 LAKQAIAAADLEAGRLVAPFANGSIPIDFGYWLVWPKGRHLSPEVRAFIKWIKDEA 302


>gi|290509377|ref|ZP_06548748.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289778771|gb|EFD86768.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 297

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 123/289 (42%), Gaps = 9/289 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E   G +L +R  R LTLT  G K+  
Sbjct: 8   QVYLRICELGSLSAAARALGMSRPMVSRYLEQMENWAGARLIHRSTRRLTLTPAGEKVLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            T  +    +    E Q +   PSG LR+A        L+   L +FL  YP ++++L +
Sbjct: 68  KTRGLTRIADEIAGERQRA--DPSGTLRVACAHFTAMQLISPLLPDFLARYPQLRLELDI 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N  + +  +  D AIR+    +  + I R+L        AAP +L+      ++ +L +
Sbjct: 126 NNHPVSLIGERIDVAIRITDNPEPGA-IARRLGLCRSLLCAAPRWLQQHGPLATLDDLQQ 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN + +        + + +     +         L       +++  V G GIA+LP+  
Sbjct: 185 HNCLLYSHF---AGQRWQFSDAQGQEASVAVSGNLSAGISSLLLEAAVAGCGIAMLPELE 241

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +    +  L  ++ D    + +VY  Y         L  F + +  + 
Sbjct: 242 ARSALASGALEVVLPDWTPKALSVYGIYLSRDYQPDGLPLFLDALQRRL 290


>gi|150376059|ref|YP_001312655.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150030606|gb|ABR62722.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 315

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 131/302 (43%), Gaps = 15/302 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++VF      GS   AA +L  S +++SR +S LE  VG++L +R  R L L+E
Sbjct: 1   MDRIDAMKVFVAAIDEGSLAGAARRLKRSPTAVSRALSFLEAHVGVELLHRTTRTLKLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V   LE   +     S  P G L I+    LG+ +L+  L +FL LYP 
Sbjct: 61  AGQRYAAACRRVLTDLEEADMLAGGESSAPRGILTISAPPILGEEILRPMLDDFLDLYPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREP 180
           +  +L+L ++ +++  +  D A+R+   +  SSLI  +L   +     A+P YL N    
Sbjct: 121 VSARLLLLDRFVNLVDEGVDVALRIGH-LADSSLISTRLGGDVRRVVVASPGYLANHPRI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCV 236
               +L KH ++ F +   +      W  T       PR         VNS  +      
Sbjct: 180 EEPADLAKHQILAFTNFGLES-----WSFTPAMGSSIPRTVQFTPRCIVNSVRAAAASAA 234

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+  L  Y V +   +  L  ++     P    +   P+   +  K++AF +F   +
Sbjct: 235 AGRGLTRLYSYHVAEYVRDGRLEIVLAGAEHPPLPAHLLAPQGRMSVPKVRAFVDFAAPR 294

Query: 294 AR 295
            R
Sbjct: 295 LR 296


>gi|327194302|gb|EGE61163.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 296

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 129/290 (44%), Gaps = 6/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  G+ +  A++L + QS+++R ++ LE  VG+ L  R  R +TLTE+GS+ +
Sbjct: 1   MRTFVRVAERGNLSMVAKELGIGQSTVTRHLNELEEAVGVALVSRTTRRVTLTEEGSRYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   +E    E + +   P+G +R++ T  LG   +   + +F   +PDI++ L 
Sbjct: 61  TNCLQILRLVEQAAEEARAARQAPAGAVRLSCTAALGVMHVTRMIFDFQDRHPDIRVDLN 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ ID+  +  D A+RL  P+  SS+    +         AP YL     P    +L 
Sbjct: 121 LTDERIDLVREGVDVALRLG-PLADSSMKLHAVGESQRLLVGAPAYLSARGRPERPADLS 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           ++  I   ++        +  A+    +  P    L+V+  L+  +    G GI     +
Sbjct: 180 RYETIVMSNVAGSNQLLLS--ASDGTSLVVPVSGRLRVDHGLAAREALAAGRGIGPTHLW 237

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +V    D+  L  ++ D       V            +++   +F+  + 
Sbjct: 238 LVHDLLDDGRLEVVLGDYRPSPVPVSLLIVPERAAIARVRLLVDFLAAEV 287


>gi|319780290|ref|YP_004139766.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166178|gb|ADV09716.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 301

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  VAR  SFT AAE+L ++Q+++S QI  LE  VG  LF R  R + LTE G 
Sbjct: 15  LQAIRVFEAVARHLSFTKAAEELAMTQAAVSYQIKVLEERVGAPLFLRRPRQIALTEAGQ 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    SE +  L         +     G L + T +    N L  +L  F + +P + +
Sbjct: 75  RLAPAVSEAFAILGQA---YAAARGGADGLLCVTTVLTFASNWLAHHLGSFQIAHPSLAV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++  D + +  D AIR     +   L   KL+        +P    +        
Sbjct: 132 RLETSSRLTDFAREDVDLAIRSGGG-KWPGLEAYKLLDADFTPMLSPKLAASIGGVREPA 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +  ++  GD+     + F         + +   S +   +Y +     + G G+A+L
Sbjct: 191 DLLRLPILDPGDI--WWTQWFEAAGVHSHDLAKRPGSSMGAQAYEA--NAAIAGHGVAIL 246

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + K       L++  + V       +  YPEA +N  K++AFR+++  +
Sbjct: 247 TRALFKAELAGGRLIQPFDLVGDDGHAFWLVYPEARRNVPKIRAFRDWLLAE 298


>gi|206562651|ref|YP_002233414.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038691|emb|CAR54652.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 306

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L+  ++E Q  + +P G LR+        N L   +  F   +P+
Sbjct: 61  TAERIYERCAAVLDELDALEVEAQTHTREPEGLLRLVAHTTAALNRLVPLIAGFKRAHPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L  + +D+  +  D  I +   + S S + R +  I +   A P YL+    P 
Sbjct: 121 VRLDVTLTERPVDLVGEGYDIGIVVPYMLTSESTVVRLVERIPVVIVATPAYLQTHARPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  +     + +    F         +  P    +  NS +   +  +   GI
Sbjct: 181 TPADLADHAFVPISPSLRRPALSFR---VDGDMLTVPFRFDISSNSPVFNREMVMHDFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +V+    +  LV+++E  D++     +   Y        K+KAF ++
Sbjct: 238 GVVPKTLVQAELASGALVQLLEEADLVDAFVEIKLAYANRALLPAKVKAFIDY 290


>gi|187927017|ref|YP_001893362.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|241665346|ref|YP_002983705.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728771|gb|ACD29935.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|240867373|gb|ACS65033.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 300

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 120/297 (40%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VA++  F   A  +  S S +S  +  LET++G++L  R  R ++ T
Sbjct: 1   MKVDLGDLNAFVAVAQAKGFREGARLMGASASGLSEAVRRLETQLGVRLLNRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L         ++E     +     +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGQRLLTRLRPALGEVEAALDVVNSFRERPAGTLKLNVPMSAARLVLPAIIPGFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           +IQ++++ +   +DI     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 EIQLEVVAEESFVDILAAGFDAGIRYDERLEQD-MIAVPIGPRTQRFATAAAPGYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCV 236
            P   ++L  H  +  G      M  + +    +    +P    L     +   ++   V
Sbjct: 180 RPAHPRDLLDHACLR-GRFASGAMPPWEFERDGEVVYVDPSGPLLVRIGGATDLVVDAAV 238

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+  L +  ++ +     L  ++E    P    Y  YP        L+AF +FI
Sbjct: 239 AGIGVVHLYEDWLRPHLASGALEPVLEAWWRPFPGPYLYYPGRRLVPAPLRAFIDFI 295


>gi|150397430|ref|YP_001327897.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150028945|gb|ABR61062.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 296

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 127/297 (42%), Gaps = 8/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + +    F  V     F  AA  L++ +S++S++++ LE  +G++L  R +R   +TE G
Sbjct: 3   NLNDFTFFVHVVDHHGFAPAARALNVPKSTLSKRVAELERNLGVRLINRTSRHFAVTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +R  + +  + E  +  ++    +P+G +RI  ++   Q  L   L +  L YP ++
Sbjct: 63  KDFYRHAAAMMIEAEAAENVVRGRLAEPNGTVRITASVPTAQLSLAPLLPQLALAYPKLR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   ++ +DI  +  D A+R    P+  S L+QR++ T      A+P YL     P  
Sbjct: 123 VTLHATDRFVDIIQEGFDLAVRDHFAPLPDSGLVQRRVGTQAKLIVASPLYLHRNGTPER 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++LD+H+    G L     E +         +          +    + +  + G GI 
Sbjct: 183 PEDLDRHD----GLLTSLASEGWMMERADGSTVSVSPKPRFVADESRVLREAALAGLGIT 238

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  + +   ++  L+RI+              P        ++A  +FI  +  D
Sbjct: 239 TLPGKLCQQEIESGTLIRILPGWTAGKVVTTILMPHRRGQLPSVRATVDFIAERLVD 295


>gi|167589853|ref|ZP_02382241.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 312

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +DKLR+F  V    SFT AA+   L++  +SR I+ LE   G +L +R  R ++LTE
Sbjct: 1   MDYFDKLRLFRSVVELRSFTRAADVHGLARPVVSRAIAELEARFGSRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +L+   + V  +L+  + E Q  + +P G LR+     +  N L   +  F   +P 
Sbjct: 61  TAERLYERCAAVLDELDALEAEAQTQTREPDGLLRLVAHTTVALNRLVPLIAGFKAAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L  + +D+  +  D  + +   + S + + R L  I +   A P YL+    P 
Sbjct: 121 VRLDVTLTERPVDLVGEGFDIGVVVPYMLTSETTVVRLLERIPVVIVATPRYLEQHPRPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  ++    + +    F         +  P    +  NS +   +  +   GI
Sbjct: 181 TPADLADHLFVSMSPALRRPALAFR---VGGDTLTVPLRFDVASNSPVFNREMVLRHFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +V+    +  LVR++ED   +     +   Y        K+KAF  +
Sbjct: 238 GVVPRALVEAELASGALVRLLEDADLVDAFVEIKLAYANRALLPAKVKAFIAY 290


>gi|330807000|ref|YP_004351462.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375108|gb|AEA66458.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 307

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 130/295 (44%), Gaps = 8/295 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F   A  GS+T AA  L +S S+IS+ +  LE    + LF R  R LTLT 
Sbjct: 1   MDRLTGLIAFARAASLGSYTAAARDLSVSPSAISKSVQRLEQHFELSLFNRTTRSLTLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L+     +  ++E  +     S  +PSG L++     +G N+L   +  F   YP 
Sbjct: 61  EGRDLYERALRILREVEDIEQAAAASRAEPSGILKVTAPPPIGLNILAPAIPRFRERYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L L ++  DI     D A+R+   +  S LI R L    + A+A+P YL     PL
Sbjct: 121 LAIDLRLGDQFSDIVEQGIDVAVRVGD-LADSRLISRTLGPHRICAFASPAYLAKRGTPL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + +L  H+ + F        +   W  +V DR +     + + +++  ++      G G
Sbjct: 180 ELSDLADHDCVNF--RYQSSGQALRWPFSVGDRMVEIAPDAAIVIDASDAVAAVLAAGGG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I + P Y+         L  +        F++   +PE+ + +  +KAF  F+  
Sbjct: 238 IGISPTYVAAPYVARGELKPLFPQFAVDRFSITALWPESRRGSPNVKAFVGFLSE 292


>gi|167736893|ref|ZP_02409667.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167822520|ref|ZP_02453991.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167892605|ref|ZP_02480007.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167901100|ref|ZP_02488305.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167909320|ref|ZP_02496411.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
          Length = 305

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +  +L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVVFENRIEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPGFAATHGMPTE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    +IT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLE--PTLISENFLFLRQAILAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++PDY+V D+     +V  ++      F   +Y  Y     +T     F +F+  +AR+
Sbjct: 237 IVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEEARN 295


>gi|15964572|ref|NP_384925.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15073750|emb|CAC45391.1| Probable transcriptional regulator [Sinorhizobium meliloti 1021]
          Length = 326

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 129/289 (44%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF    R  +FT AA +L ++Q+++S  I GLE ++G+ LF+R  R + LTE G K H
Sbjct: 17  LIVFEAAGRHQNFTRAASELGMTQAAVSYAIRGLENQLGVPLFHRVHRAVQLTEAGEKFH 76

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    +++ +  +++    + +  + +A +       +   L       P+I +++ 
Sbjct: 77  ADVSVGLARIQKSAEDIRAKGRETN--VTLAASTAFASMWMLPRLARLREDLPEIDLRIQ 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +D+D+  +     IR   P          L    + A A P Y++    P +  +L 
Sbjct: 135 TSVRDLDLDDEPIPLGIRGGDPSHWPRYHAAVLADEVIQAVATPAYIETHGLPATPADLI 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HNLI   + + +  +   W A+        +   L +N Y+ ++Q  + G GIAL  ++
Sbjct: 195 RHNLIHLEEPVRRACDWTEWFASAGLAYPT-QGKRLAINDYVLVIQAVLAGEGIALGWEH 253

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +      +  LV +   V+      Y  +P + +   + +  R+++  +
Sbjct: 254 LTARQVRSGALVPVGGHVLRTGQAFYVVWPRSRELNSQARRIRDWLLEE 302


>gi|114563948|ref|YP_751462.1| DNA-binding transcriptional activator GcvA [Shewanella
           frigidimarina NCIMB 400]
 gi|114335241|gb|ABI72623.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 303

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 113/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  +E  +   +  +    G L ++ +       L   L +F    PDI +
Sbjct: 68  SYFLDIKDIF--IELGEATNRLLARSAVGSLTVSMSPSFAIQWLVPRLAKFSEKNPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +      L   KL    +    +P  L   +  +   
Sbjct: 126 RIKAVDSDASSLTDDVDVAIYYGQG-NWPGLRADKLRNEVLIPVCSPLLLNGPKPLIQPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKLHTLLHDSSR----QDWQAWFRQCGVTDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV    +V+      Y    +     GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVCPFSEVLVSKDAYYLVCQQNHSEIGKISAFREWMV 289


>gi|121600485|ref|YP_991562.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|167003209|ref|ZP_02268999.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254175062|ref|ZP_04881723.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|121229295|gb|ABM51813.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|160696107|gb|EDP86077.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|243061206|gb|EES43392.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 303

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +  +L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVVFENRIEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPGFAATHGMPTE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    +IT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLE--PTLISENFLFLRQAILAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++PDY+V D+     +V  ++      F   +Y  Y     +T     F +F+  +AR+
Sbjct: 237 IVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEEARN 295


>gi|240949153|ref|ZP_04753500.1| putative transcriptional regulator [Actinobacillus minor NM305]
 gi|240296456|gb|EER47092.1| putative transcriptional regulator [Actinobacillus minor NM305]
          Length = 296

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 133/292 (45%), Gaps = 8/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +D+  + +F  V   GS   AAE+L ++ S++++ I  LE  + IKL  R  R L+LTE 
Sbjct: 2   YDYKAMSIFATVIEQGSMQAAAEKLFMTPSAVTQAIQKLEAHLKIKLLNRTTRKLSLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++  S++          ++    +PSGKL IA    L  + L    K  L  YP+ 
Sbjct: 62  GEVFYQHISKMQQNASEAIKSIELLREEPSGKLTIACASGLIDSGLSQIFKPILTQYPEF 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +++ +D+     D A+R  + I ++++I R L   H    A   Y+     P +
Sbjct: 122 TLDILFEDRVLDLLDKRIDIALRAGEGILANNMIARHLYDFHWKIVAHRDYVAEKGIPQN 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL + + I F +      E+  +    ++ +  P     Q NS  +     + G G++
Sbjct: 182 LTELAQLDWIGFSN---PRFENVTFQCNNEQQMITPNYRA-QGNSLYASRCLTLDGLGVS 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L     V+      +LV ++ +   P+  +Y    + ++ + K++   + I 
Sbjct: 238 LQIAPEVEKWIKQGDLVELLPEWQLPTVPLYLVTLQRIQ-SEKVRIACDLIM 288


>gi|154246137|ref|YP_001417095.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160222|gb|ABS67438.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 307

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 136/305 (44%), Gaps = 13/305 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FDW  L  F  VAR+G  T AA +L +  S++SR+I  LE  +G KLF R   G  LT 
Sbjct: 5   DFDWSDLTFFLAVARAGRLTAAAARLKVEHSTVSRRIGALEEALGAKLFDRRPHGYGLTA 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +       Q E+  + +  +G +RI      G   L   +     L+P+
Sbjct: 65  AGERLMAAAEGMETLALAAQGEIGGADLGVAGTVRIGAPDGFGTFFLAPRISALADLHPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + IQL+   +   +S   AD AI L +P +   L  RKL    +  YA+  YL+      
Sbjct: 125 LDIQLLAMPRLFSLSKREADIAISLSRP-KEGRLHARKLTDYRLGLYASRAYLERHGPIE 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S   L +H  I + D +    E    L  V     + R+  L+ +S ++ +     G+G+
Sbjct: 184 SRAGLQRHPFIGYVDDLIYAPE----LDYVPLVAKDIRV-RLKSSSLVAQLTATQAGAGV 238

Query: 242 ALLPDYIVK----DNPN-LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI--FLKA 294
            +LP ++      D PN LV I+   +  + T +       ++  +++   +FI   ++A
Sbjct: 239 CVLPCFMADLFAGDRPNALVPILPGDVGLTRTFWLLTHTDTRDLARIRVAADFIAGVVQA 298

Query: 295 RDWKF 299
              +F
Sbjct: 299 ARGQF 303


>gi|260432709|ref|ZP_05786680.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416537|gb|EEX09796.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 292

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 127/294 (43%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  +E  + +KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHIDAIEARLKVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+      SG+L + T++     L+   L  F   +PD+ 
Sbjct: 63  EDLLRVAQATEDQFNQLVGRLKGRGDDVSGEL-VVTSLAALAPLVVPTLTAFQQDHPDLI 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +  ++   +    A  AIR          + +  +T  +  YA+  Y+     P  +
Sbjct: 122 VRYLTGDRLFRLEYGEAHVAIRAGAAPDQPDNVVQPFMTQEVGLYASQDYIARRGLPEGV 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++   H  +   D   +      WL    R          + +   S+ +  + G+GI  
Sbjct: 182 EDFPNHAFVGADDENSRAPFS-RWL----RANVPAEAITFRCSDNFSVAEAVLAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  +    +P L  +ME +   +  ++      L  T K++ F  F+  +ARDW
Sbjct: 237 MARWEAARHPQLQEVMEPLPEWAGNLWLVTHVDLHRTAKVQTFLKFLKEQARDW 290


>gi|259415112|ref|ZP_05739034.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259349022|gb|EEW60776.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 307

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 127/289 (43%), Gaps = 6/289 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW+ +R F V A +GS + AA+QL L+Q ++SRQ++ LE E+ + LF R  R L LT+
Sbjct: 17  TVDWNHIRAFLVTAEAGSLSAAAQQLCLTQPTLSRQVAALEAELELILFERIGRKLALTQ 76

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +        +     +    G +RI  +  L   +L   L +   + P 
Sbjct: 77  AGRQLLEHGRHMGDAASALTLTATGQAEAIDGTIRITASDILSSYVLPPILHQLRQIAPQ 136

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L+  N   D+    AD AIR  +P +   LI R+L     H YAA  YL     P 
Sbjct: 137 LTIDLVAANDIHDLMRREADIAIRHIRP-EQPDLIARQLPDGQAHFYAATSYLDQHGRPQ 195

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H+ I+FGD             T+      P    ++  + L        G GI
Sbjct: 196 TPEDLATHDFISFGDSKRMIEHARELGLTL-----RPDQFRIETRNGLVGWDLLRAGFGI 250

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A + D + +    + RIM  V T  F  +      L  + K++   + +
Sbjct: 251 APMHDKVAEQTQGIERIMHWVPTTRFPFWLITHRELHTSRKIRLVFDHL 299


>gi|170696157|ref|ZP_02887292.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170138972|gb|EDT07165.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 335

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 7/293 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R+F  VA + SF+  AE   ++ + ++R++  LE  +  +LF R  R + LT+
Sbjct: 1   MDHLETIRIFVKVADTSSFSRTAEHFAVTTAVVTRRVVALEKRLDARLFRRTTRHVALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +   ++  ++ +     +  G LRIA+ +  G   L   LK F   YP 
Sbjct: 61  AGATFLESARRILDDIDEAEMAVAGQERRACGVLRIASPVAFGLRHLSPILKSFRDAYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L +  I++     D  I        +SL+ R+  +  M   A+P YL+    P 
Sbjct: 121 VMPHVALCDDTINLVERRVDVVIVPEVEASGNSLVTRRFASSPMQLVASPMYLQRHGVPG 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++  L+ H  +       +  E    L  +      P  S +  NS   + +  V G GI
Sbjct: 181 TVAALNDH--VVLQHSGKQFAECLRRLERLGDGRCHPD-SLIMSNSLAMLHKMSVDGHGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A+LP Y+ +   D+  LV ++  +  P   +   +        +++AF +FI 
Sbjct: 238 AVLPAYLAEPDIDSGLLVNVLPGIDMPRLDLSVAFETRHNMPARIRAFIDFIV 290


>gi|330901197|gb|EGH32616.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 304

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 121/288 (42%), Gaps = 5/288 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F  +AR  SF  A  ++ +S S++S  + GLET +GI+L  R  R +TLT  G
Sbjct: 7   NLADIVYFLAIARHQSFRKAGLEVGISASALSHAMKGLETRLGIRLLNRTTRSVTLTAAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L  + S   + +      L     +P+G++R+    D  + LL   L  F+  YPDI+
Sbjct: 67  EELQGLISSPVNDIGQALETLNRLRDEPAGRIRLNVLSDGAKLLLGPVLPVFVDRYPDIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L + N+ +DI  D  D  IR    + +  + QR    +      AP YLK    P   
Sbjct: 127 VDLTVTNRMVDIIGDGHDAGIRFGGTVPADMIAQRLSPDVAWAVVGAPDYLKRFGIPKHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +       +        +   + +       + ++     +   + G G+  
Sbjct: 187 SDLYQHRCLRIRLGNARIYHW--QFSKEGQQLEIDAPGAVTIDETRVGVAMAMRGVGLMY 244

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P ++V+      +L R++ED        +  Y    +    L+   +
Sbjct: 245 VPAWVVERQIAEGSLHRVLEDWTHHDPGFHIYYSSFRQLPVGLRLLID 292


>gi|254472082|ref|ZP_05085483.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211959284|gb|EEA94483.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 296

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 134/288 (46%), Gaps = 7/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  VARSG    AA++L L+ ++++R++S LE  +  KL  R   G  LT +
Sbjct: 1   MNWDDARVFLAVARSGQILGAAQRLGLNHATVARRLSALEAALQAKLIDRRTTGCALTSE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ + + E+  + V+ SG +RI      G   L   L      YPD+
Sbjct: 61  GERFFEFAESMETEMLSARAEIGGTDVELSGAVRIGAPDGFGVAFLAPRLGALNERYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL+  ++   +S   AD A+ + +P +   L+ RKL    +  YA+  Y      P +
Sbjct: 121 TLQLVPLHRAFSLSKREADLAVTVGQP-EHGRLVSRKLTDYSLGLYASRTYADRYGLPQT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL +H LI + D +      F           +   S L+  S L   +    GSGI 
Sbjct: 180 EEELKQHRLIGYVDDL-----IFASSLNYSAEFSKEWQSRLECASALGQTEAVRAGSGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +L  +I   N + V ++ +    S + Y    E+ ++  ++KA  +FI
Sbjct: 235 ILHGFIADGNDDFVPVLPERRI-SRSYYLVTHESARHLRRIKAVSDFI 281


>gi|296104314|ref|YP_003614460.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058773|gb|ADF63511.1| transcriptional regulator, LysR family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 304

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/284 (24%), Positives = 127/284 (44%), Gaps = 7/284 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  + SFT AA  L +S+SS+SR IS LE  +G  L  R  R + +TE G   +
Sbjct: 10  MVVFARVVETLSFTEAALSLGMSKSSVSRDISTLEKRIGAMLLKRTTRKIEITELGLSYY 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +   ++ ++L   +  +++   +P+G ++I   +  G+  +   L  +L       + L 
Sbjct: 70  QHCFKILNELRAAERFIRDYYEEPAGTIKILAPVTFGKEYVVPALNAYLERNIMANVDLD 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +K +DI     D +I + +   +     + L +I    YA P  +   R  L+  +L 
Sbjct: 130 LSDKAVDIKESQYDLSIIVAQDTPTHE-HTKFLCSIQWGLYATPDCIARMRPVLTPGDLP 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            HN I F  +       F       + +     S  + N+ ++++   + G GIA LP+Y
Sbjct: 189 AHNYILFRGVARTVSLPFR---KEKQKVNIDVHSRFRSNNSVALISMALSGLGIAYLPNY 245

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           I +++     LVR++       + V+         T  +K F +
Sbjct: 246 IARESLATGKLVRLLPGWQMDEYKVWLLSKNKNTMTSGIKRFSD 289


>gi|300724591|ref|YP_003713916.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
 gi|297631133|emb|CBJ91824.1| putative transcriptional regulator (fragment) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 252

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 6/243 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++ +F  V  +GSF+ AA QL  + S+ISR +S LE E+G +L  R  R L L+E G +
Sbjct: 2   REMAIFAKVVETGSFSEAARQLAATPSAISRSVSRLEKELGTRLLQRTTRKLRLSESGQE 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     + +  +         S +P G +RI+    +G  ++  ++  FL  YP + + 
Sbjct: 62  VYEHCLNMVNAAQEVMAASGNFSHEPRGMIRISVPKAVGHFVVHPHIPAFLAQYPQVNVN 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L LD++ +D+  D  D AIR+        L+ R+L  I     A P YL     P    +
Sbjct: 122 LRLDDRYVDLIDDQIDLAIRITDQ-PPPGLMGRRLSNIWHMLCATPEYLAEHGTPQHPHD 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  HN I  G+       D  W  +    I    I      N     +   +   GI  L
Sbjct: 181 LKTHNCIYLGEEPG----DSRWKFSQGCKIATVNIHGRYAANHTGVRLDVVLQHIGIGSL 236

Query: 245 PDY 247
           P Y
Sbjct: 237 PYY 239


>gi|269964808|ref|ZP_06179045.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
 gi|269830468|gb|EEZ84690.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
          Length = 251

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 11/247 (4%)

Query: 53  HARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL 112
               ++L+E G   ++    +   LE  ++ + +   +P G LR+   +  G+  L   L
Sbjct: 13  RRVKVSLSEAGQLYYQQCKHLVEGLELAELAVTQMQTEPRGLLRVTAPVTYGEMNLAPLL 72

Query: 113 KEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
            +FL  YP + + L+L N+ +D+     D AIRL + +Q SS+I ++L +   +  A+P 
Sbjct: 73  HQFLEKYPRVDLDLVLTNQKLDLIEQGVDVAIRLGR-LQDSSMIAKRLSSRQNYVCASPM 131

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           YL+   EP ++ EL +H  +           D+       R         ++ NS  ++M
Sbjct: 132 YLERFGEPHTLSELARHQCLV-------GSVDYWHFKENKRDKSLRVSGRIKCNSGFALM 184

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                G G+  LPDY V+   DN  LV ++ D       ++  YP++   + K++   +F
Sbjct: 185 GAAKRGLGLVQLPDYYVQEALDNGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDF 244

Query: 290 IFLKARD 296
           +  +  D
Sbjct: 245 LAQELAD 251


>gi|239994447|ref|ZP_04714971.1| LysR family substrate binding transcriptional regulator
           [Alteromonas macleodii ATCC 27126]
          Length = 305

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 131/297 (44%), Gaps = 26/297 (8%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  VA + +F  AAE++ +S+  +S QI  LE  +G+KL  R  R ++LT +G +
Sbjct: 8   ERLMLFSAVAETLNFGAAAEKMQISRGYLSEQIRELELALGVKLLQRSTRQVSLTNEGKQ 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++  T ++   +   +  L     +  G + I         LL      F   +PD+   
Sbjct: 68  VYADTQKINRSVVELEQNLVREQTQLEGIIAITAPNMFAHYLLSELCFSFSQQHPDVSFH 127

Query: 126 LILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L    +  D++  + D A R    P Q   ++ + L T      AAP YLK    P  + 
Sbjct: 128 LDTSYQRHDLNRGHFDLAFRSTNNPPQD--MVAKPLFTYSHTIVAAPQYLKQAGTPKVLS 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +LD H      D         NWL    R   +     L++N  L+++Q+ + G GIA L
Sbjct: 186 DLDAHQCFCGPD-------QDNWLIKGKRTAVK---GWLKLNDNLALIQHVLEGRGIARL 235

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFT----------VYFCYPEALKNTGKLKAFRN 288
           P Y+ K +     LV + E++   S            ++  +P+    + ++KAF +
Sbjct: 236 PSYVAKKHSKAGELVALFEEIKLGSTPSEPPIKSTSQLFVVHPQRPHQSLRIKAFLD 292


>gi|167844102|ref|ZP_02469610.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
          Length = 304

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +  +L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVVFENRIEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPGFAATHGMPTE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    +IT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLE--PTLISENFLFLRQAILAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++PDY+V D+     +V  ++      F   +Y  Y     +T     F +F+  +AR+
Sbjct: 237 IVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEEARN 295


>gi|148550969|ref|YP_001260399.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148503380|gb|ABQ71632.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 294

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 138/296 (46%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
             WD LR+F  VAR+G  T A + L ++ ++++R+++ LE  +G  LF R +RG+ +T  
Sbjct: 2   LHWDDLRLFLAVARAGRLTKAGQALGINHTTVARRLTALEEALGAHLFDRTSRGVAMTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L         + E     L   +   +G++R+AT    G  ++  N+ +F   YP +
Sbjct: 62  GTLLLDHAERAEREFEAAAAALSGRAEAIAGEVRLATPEAFGTYIVAPNIVDFHARYPGL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+ +++ + ++   AD AI + +P     L+ RKL    +  YA+  YL       +
Sbjct: 122 LLELMPESRAVSLANREADIAITVDRP-PRGKLVVRKLCDYRLGLYASADYLACHPPIRN 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q++     + + D     M D + L  +     E R    + +S ++  +    G G+ 
Sbjct: 181 AQDVAAQPFVGYID----QMIDMHGLRYLSEVADETR-PVFRSSSIVAQQKAVASGVGLG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LL  +     P LVRI+ + +  + + +       + + + +A  +FI      ++
Sbjct: 236 LLHRFSADSEPGLVRILPEQVEITRSYWLVLRPEHQKSPRTRAVIDFIDDLLARYR 291


>gi|51597692|ref|YP_071883.1| LysR family regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|153950078|ref|YP_001399572.1| LysR family substrate binding transcriptional regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|186896833|ref|YP_001873945.1| LysR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590974|emb|CAH22632.1| LysR-family regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|152961573|gb|ABS49034.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|186699859|gb|ACC90488.1| transcriptional regulator, LysR family [Yersinia pseudotuberculosis
           PB1/+]
          Length = 303

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 142/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGALFLSHARQIIGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P+YL+    P
Sbjct: 121 QITLELNTDDLNIDLLEQRTDIAIRIGA-LRDSTIHARLLGASRVRLLASPNYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I+ L  H+L+ F    P+ +  ++             I  L  +S  ++    + G G
Sbjct: 180 HTIEALADHSLLGFTQ--PEFLNQWSLPHLPGGRSSI--IPNLAASSGETLRLLALQGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L D++ +++     LV ++ D I  ++  +   Y    +   ++  F +++  + +
Sbjct: 236 IAELSDFMTREDQLAGRLVEVLADQILETWQPINAVYYRNTQLAARITCFLDYVSEQIK 294


>gi|218513658|ref|ZP_03510498.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 267

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 127/270 (47%), Gaps = 7/270 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R F  V  +  F+ AA +   S++ +S+ +  LE E+G  L  R  R  ++TE
Sbjct: 1   MDTLTRIRAFIDVVEAEGFSAAARRTGRSKALLSKYVRELEDELGALLLNRTTRQFSMTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +R  S++  +++     ++E++ +  G+LRI+         +  +L +F    P+
Sbjct: 61  AGHTYYRSASDILKEIDNLADLVRENNAQLKGRLRISVPRTFVDADVGQSLIDFAAENPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++  D++ +D+  +  D AIR+ K ++ S +I RK+    +H  A P ++++  +  
Sbjct: 121 LSLEIAADDRFVDLIEEGFDVAIRISK-LEDSGMIARKISDFRVHLCATPDFIEHHPDLE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              ++     I   D   +      +    +          ++VNS  + ++  + G GI
Sbjct: 180 HPSDISNVPFIV--DTNSRTQGSIRFYNPDNTTFAVAVSGPIEVNSPHATLRAALAGIGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFT 268
           AL+PD+I +   ++  L+ +  D I     
Sbjct: 238 ALIPDFIARKPIESGELLTLFNDYIPTDRG 267


>gi|332532609|ref|ZP_08408486.1| putative transcriptional regulator with periplasmic binding domain
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038030|gb|EGI74478.1| putative transcriptional regulator with periplasmic binding domain
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 312

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 144/290 (49%), Gaps = 7/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +   V   GSF  AAE  ++ +S IS+QIS LE E+G++L  R  R  +LT  G+++
Sbjct: 6   RLLMLLEVVEQGSFAKAAEIRNIDRSVISKQISRLEDELGVRLLNRTTRSFSLTAAGAEM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  +E+   L  T    +   ++P G L+I ++  +G+  LQ  L +F   +P ++++L
Sbjct: 66  IKKAAELRELLGETVRMAENYHLEPRGVLKITSSTLIGRRYLQPVLNDFQKRFPQVEVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +DI  +  D A R+ +P + SSLI RK+    +   AAP +++    P +++EL
Sbjct: 126 RLDDRLVDIVSEGFDLAFRVGEP-KDSSLIARKIARNRLLILAAPQFIETYGMPKTMEEL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            K    ++     + +E  ++  +      +   S  + N   S++   + G+   + P 
Sbjct: 185 AKLPAASYASNSIR-VEAIDYYDSKGERCEQKIKSVFRANDAESLLMKTLSGTTYFVAPA 243

Query: 247 YIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
           +I+ D      LV ++ DV    F  +Y  YP       + + F + +  
Sbjct: 244 FIIGDEIIQGKLVPLLTDVKLMEFSAMYAVYPH-RDLPVRTRLFFDAVRE 292


>gi|186471292|ref|YP_001862610.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197601|gb|ACC75564.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 308

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 124/297 (41%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++VF      GS   A+ +L  S +++SR I+ LE  VG  L +R  R + L+E
Sbjct: 1   MDRIDAMKVFVATLDEGSLAGASRRLGRSPAAVSRAIAFLEAHVGSPLLHRTTRTIKLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   LE   + +      P G L +   +  GQ+LL+  L +F+  YP 
Sbjct: 61  AGERYAAACRRILTDLEEADLLVAGERSAPRGLLNVTAPVAAGQDLLRSLLDDFIDAYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L + ++ + +  +  D A+R+   +  S+L+   +  +     AAP YL       
Sbjct: 121 VSVRLHMLDRPVSLIDEGIDVALRIAH-LPDSTLVAIPVGEVRRVVTAAPRYLAKHPRIH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H +I+           F        P        L VNS  + +   V G G+
Sbjct: 180 EPGDLAEHQIISMTHFGLDSWS-FPPAEGSTVPQVVTFSPRLIVNSIDAAVASAVEGRGV 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y V     + +L  ++ D       V+   P    +  K++AF +F   + R
Sbjct: 239 TRVFSYHVAQQVKDGHLRIVLRDSEHAPLPVHLLTPHGRLSVPKVRAFVDFATPRLR 295


>gi|226945600|ref|YP_002800673.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
 gi|226720527|gb|ACO79698.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
          Length = 297

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 121/290 (41%), Gaps = 6/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L     VAR  SFT AA QL +SQS +S  I GLE  +G++L  R  R +++TE G 
Sbjct: 6   YSELLALIAVARERSFTRAAAQLGISQSMLSHTIRGLEARLGVRLLTRTTRSVSVTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L RV +     +E+    + E S   +G +RI  T      LL   L E L  YP I++
Sbjct: 66  RLLRVVAPRLKDIESELRHVAELSETAAGTIRITATEHAIDTLLWPKLSEILPAYPKIKV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L  D    DI     D  +RL   +   S   R    +      AP Y  +   P   Q
Sbjct: 126 ELNSDYALTDIVQGRYDFGVRLGDGLTRDSSAVRIAPDLQFAIVGAPSYFASRAMPDKPQ 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I     +P     + W     +     R+   L  N    I+   + G G+A 
Sbjct: 186 DLANHECINL--RLPTRGNLYAWELKKSQSESNVRVEGQLVFNGIYQILNAALSGFGLAY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +P+ + +   ++  L+ +M+         +  Y    + +  ++     +
Sbjct: 244 VPEDLARPHLESGRLLPVMKSWWRKFPGYHLYYSNQHEISRAMQILIEAL 293


>gi|120597335|ref|YP_961909.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120557428|gb|ABM23355.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
          Length = 308

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 122/295 (41%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L +F  VA  G+ + AA ++ +S +S S  I  LE ++   LF R  R L LT Q
Sbjct: 1   MLINDLALFVRVADCGNISAAAAEMDISAASASAAIKRLEKQLDTSLFIRTTRSLRLTVQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +           L   +  +     K SG L ++ + D G+NL    L EFLL +P +
Sbjct: 61  GERYLIHCRRALSDLALGEQAIASDKGKISGTLSLSVSSDFGRNLFVPWLDEFLLDFPQL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L L +       D  D A+R  KP Q S+ +   + ++     A+P YL       S
Sbjct: 121 LVRLHLGDNISSFYHDKIDVAVRYGKP-QDSNQVAFPICSVDRVLCASPEYLAKFGVLDS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGI 241
           +++L +HN + +            WL   D    + R++  +  N      ++ V G G+
Sbjct: 180 LEQLVEHNCLFYKL---DDRTHDQWLFRRDGQEFKVRVTGNRSANDAEIARRWAVAGKGL 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                  + D+     LVR++ +       +Y   P     T  +   R  +  +
Sbjct: 237 VFKSSLDLADDLISGRLVRLLPEYQGEPVDLYLVCPGREHVTPVVLLLREMLRQR 291


>gi|152995725|ref|YP_001340560.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836649|gb|ABR70625.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 311

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 126/295 (42%), Gaps = 16/295 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR GSF  AA++L ++ S+IS QI GLE+ +G++LF R  R + LTE G 
Sbjct: 20  LNSLKCFESAARHGSFNKAAKELSVTPSAISHQIKGLESFLGLELFRRTKRKVILTEAGE 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    ++ +LE+   EL+    + SG LR+A         L   ++ F   YPDIQI
Sbjct: 80  SYLKPIKSIFEQLESATSELKS--KQKSGSLRLAVAPAFLTRWLMPRMERFQERYPDIQI 137

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++      ID S +  D A+          +    L    +     P  +K  +  +  +
Sbjct: 138 EISSSTGLIDFSANDIDMAVYFGSGDWDD-VEAYYLRPARLAPVCNPRLIKPEQPIVKPE 196

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243
           ++  + L+    +  +  E  +WL   D      R   L  +S          G GI+L 
Sbjct: 197 DMRFYPLLH---VTKRKDEWHDWLQQHDLDPKLFRRG-LMFSSGSLTAGAAAQGLGISLT 252

Query: 244 -----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                +P+    +   L  + +  +  + + Y  Y +    T  + AF+ +I  +
Sbjct: 253 DPELIMPEI---EAGTLKVLFDQHLITNRSFYLVYEKRRSVTSAMSAFKEWIIEE 304


>gi|262044473|ref|ZP_06017531.1| LysR substrate binding domain protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038166|gb|EEW39379.1| LysR substrate binding domain protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 310

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 124/296 (41%), Gaps = 12/296 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D+  L++F  V  + SF+    +  +S S ISR I  LE  +G +LFYR+ R +  TE
Sbjct: 6   SVDFRALQLFIAVYDNQSFSVVTRREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+  +    Q  LQ+ +  P G +RI   +  GQ  +   L E    +P 
Sbjct: 66  AGRLFAASARELLGQYADAQRALQDRAQVPGGLVRINAPVYFGQRHIAPWLPELAARHPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q  L L +  ID   D  D   R+   +  +    R   +   +  A+P Y+     P 
Sbjct: 126 LQFDLTLTDDFIDPHRDATDILFRISS-LPDAGYHARVFGSQRYYLTASPEYVSRYGSPT 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L +H  + +G         F         +  P    +  N+  +++   + G GI
Sbjct: 185 SPEALHQHRTLVYGGSQGANRWLFRQREEA--WLHYPLTPLMTSNNADALLTSAIGGMGI 242

Query: 242 ALLPDYIVKD---NPNLVRIMEDV-----ITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L PD++V +   N  LV +M+        TPS+ +   YP     +  ++   ++
Sbjct: 243 VLFPDWMVSEALHNGTLVTLMDRYSAAISHTPSY-IAAIYPYTRHPSLNVRTVIDY 297


>gi|83746965|ref|ZP_00944011.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83726385|gb|EAP73517.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 298

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 118/288 (40%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q +  R +  LE  +G  LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                   G +RI  +  +   +L   L +    YP + +
Sbjct: 68  ALRPYAESLESTSAALLRAASSQGEGVRGTVRITASEVVTGEVLPAILADLHAAYPGLTL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N+  D+    AD A+R+++P Q   LI R +  I +  +A   YL+    P ++ 
Sbjct: 128 ELVPSNRLEDLLRRDADIAVRMQRPSQ-GVLIARHIGGIELGVHAHRRYLERRGTPATLD 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI +          F        P        L+ +S L+ +     G GI + 
Sbjct: 187 DLAGHALIGYDRETA-----FIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGIC 241

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + + +P+LVR+  D + P    +    E L+++   +   + +  
Sbjct: 242 QVGLARRDPDLVRLFADEVAPVLDTWLAMHEDLRDSPCCRVVFDALAA 289


>gi|170736555|ref|YP_001777815.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818743|gb|ACA93325.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 293

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 119/296 (40%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  +   G    A  ++ LS +++S +++ LE   G  L  R  R ++LT++
Sbjct: 1   MLLDNLALFLRIVEKGGLAAAGREVGLSPATVSERLTALERHYGAALLTRTTRAISLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  + +  +  ++      SG +R++   DLG+  +   +   L  +P +
Sbjct: 61  GRTLVDGARRLLAEADELESRVRLGVQTLSGPVRLSAPADLGRERVVPVVDALLADHPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+     D AIR R  +  SSL  R L        A+P YL     P+ 
Sbjct: 121 TVDLHLGDGYVDLVGQGLDFAIR-RGTLADSSLRSRSLGRARRVVCASPAYLAAHGAPMH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPI-GEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H+ I          E   W  ++D  +           N    +  +C+ G GI
Sbjct: 180 PDELAAHDCIVMRFGQELYAE---WPFSIDGVLKRVVVRGRRVANDGALVRAWCIAGHGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL     V+ +     LV I+ D       +   YP ++    +++A  + +    
Sbjct: 237 ALKSLVDVERDLASGALVEILRDFSPGEVDLQIVYPGSVAQPRRVRALIDRLAQAL 292


>gi|149909569|ref|ZP_01898223.1| hypothetical protein PE36_17225 [Moritella sp. PE36]
 gi|149807474|gb|EDM67425.1| hypothetical protein PE36_17225 [Moritella sp. PE36]
          Length = 308

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/302 (21%), Positives = 130/302 (43%), Gaps = 9/302 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR FY ++   S T AA +L+++  ++++++  +E +V +KL  R ARG++LTE+G  
Sbjct: 5   EDLRFFYAISTQPSLTAAARKLNVTPPTVTQRLQAIEAKVSVKLVQRQARGISLTEEGYL 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +  +++  Q  +       +G L++   +  G + +   + EF   +P++ ++
Sbjct: 65  LQDKARSILAEMDQLQTLMASKKNLINGTLKVLAPLGFGNDYIAPLVGEFQQQHPNLAVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L +K         D  I + + ++ S+L    L        A+P YLK    P S + 
Sbjct: 125 LELSDKPSWAESHRWDIIIYIGE-LRDSTLKLAMLAPNQRFLCASPDYLKKHGTPRSPRA 183

Query: 186 LDKHNLITFGDLIPK-CMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           L  H  I+  +      +  F   A       +  I     L  N    +  + + GSGI
Sbjct: 184 LRDHTCISLRENSEDVTLWRFTHTAGDGDSEEQESIRITPTLTSNEGSVVKNWAIAGSGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCY-PEALKNTGKLKAFRNFIFLKARDW 297
            +  ++ V+   ++  LVR++ D   PS  +      +    + +   F   +  +    
Sbjct: 244 IMRSEWDVQPELNSGALVRLLPDYSLPSADIVALLGTDTRARSARTTHFLQLLKDRFAQQ 303

Query: 298 KF 299
            +
Sbjct: 304 PW 305


>gi|154251281|ref|YP_001412105.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gi|154155231|gb|ABS62448.1| transcriptional regulator, LysR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 303

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 127/292 (43%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD  R+F  V  + S + A  +L LS +++ R I+ LE  +G KLF R   G  LT  G
Sbjct: 6   NWDAYRIFLAVVDTQSLSGAGRRLKLSHATVGRHIATLEKRLGTKLFVREPTGYALTGAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +    E           +  G +R+A    +        L EF   +P I+
Sbjct: 66  ERLRAEVEPMSLAAERALHAASSEDGQAQGLVRVAIPHSIASYWFMPYLDEFAARHPGIE 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+++ +   + +    AD  IR   P +  +++ RK+  I +  YA+  Y +    P   
Sbjct: 126 IEIVNEVTQVSVKRRDADIVIRPYGPGR-ENVVGRKIGRIGVGFYASRSYAERFGLPSKR 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +E  +H +I FG    + +E  +WLA V +         L+  S   ++Q    G GI+ 
Sbjct: 185 EEWKEHRIIGFGGRAAE-VELADWLAHVTQGARV----ALRCFSDADLVQAVRAGVGIST 239

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L         +L+RI    +     ++      L++T  ++A  +F+  KA+
Sbjct: 240 LVCLTGDHYDDLIRIAPQKLANGTEMWLLAHPDLRDTAPVRAVIDFLGEKAK 291


>gi|107025345|ref|YP_622856.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693472|ref|YP_839005.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105894719|gb|ABF77883.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651472|gb|ABK12112.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 306

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 137/289 (47%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A  GS++ AA  L ++ S+IS+ I  LE    IKLF R  R LTLT++G 
Sbjct: 9   LTGLIAFSRAASLGSYSAAARALGVTPSAISKSIQRLERHFEIKLFNRTTRSLTLTQEGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            LH  T  +  ++E  +     +  +P+G L++   + +G +L+   L  F   +P + I
Sbjct: 69  DLHERTLRLLSEMEAIEQAAASARSEPAGILKVTAPLPIGVHLIAPALPAFRQRFPKLSI 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L +  +D+  +  D A+R+   +  S L+ R L   ++ AYA+P YL     P    
Sbjct: 129 DLRLGDHFVDLVGEGIDVAVRVGD-LTGSRLVSRALSPHYIGAYASPDYLAKRGVPRHPD 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H+ + F       +  +   AT + P+     + + V++  ++      G G+ + 
Sbjct: 188 ELVEHDCVNFRFQSSGQVLRWT-FATDEGPLSLTPDADIVVDTSDAVAAVMAAGGGVGIS 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P Y+         LV I+ + + P  T+   +PE+ +++  +K    ++
Sbjct: 247 PTYVAAAYVRRGELVPILTEFVEPRSTITALWPESRRSSPNVKVLLAYL 295


>gi|15838369|ref|NP_299057.1| LysR family transcriptional regulator [Xylella fastidiosa 9a5c]
 gi|9106842|gb|AAF84577.1|AE003999_5 transcriptional regulator (LysR family) [Xylella fastidiosa 9a5c]
          Length = 313

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 122/291 (41%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+ F  VAR+ SFT AA QL LS+S++S  +  LE  +G++L  R  R ++ TE G
Sbjct: 22  NLNDLQAFVAVARARSFTRAAAQLGLSRSALSHAMLALEARLGVRLLTRTTRSVSTTEAG 81

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L    +    ++E     L  +  KP+G +RI         +L   L   L  YPD+ 
Sbjct: 82  ARLLDAVAPRLDEIELELGSLSAARDKPAGTVRITAHDHAISTVLWPRLLPLLRDYPDVH 141

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  +D    DI+    D  +R+   +    +  R    + M   A+P YL     P + 
Sbjct: 142 LEFSVDYAFTDIAAHRFDAGVRIGDRVDKDMIAVRIAPDLLMAVAASPEYLAGRPHPRTP 201

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL +H  I     +P     + W    D      R+      N+   ++Q  + G G A
Sbjct: 202 HELTEHRCINL--RLPTHGGLYAWDFEKDGEAVNVRVGGQTTFNNTFLMLQAALDGMGFA 259

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +P   ++   +   LV +++D        +  Y    +    L      +
Sbjct: 260 FVPLDTMQAHIEAGRLVPVLQDWWPTFPGYHLYYANRRQIAPALALVIEAL 310


>gi|172060835|ref|YP_001808487.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993352|gb|ACB64271.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 303

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F  VA +GS   AA +  +S   + R+I  LE  +G+KL YR  R L ++E
Sbjct: 1   MDRFKQIETFVRVADAGSLAAAALEEGVSPVVLGRRIDALEKRLGVKLMYRSTRRLVVSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+        +  + +  + EL       SG L ++     G+  +  +   FL   P+
Sbjct: 61  EGAAFLERCRGLLSEWDQAENELAAGRRAVSGHLIVSAPAAFGRKHVAPHAPGFLFDKPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+   L ++ +D+  +  D +IR+   +   + +  KL +        P Y +    P 
Sbjct: 121 MQLSFNLTDRVVDLVREGYDLSIRIGGSV-DPNFVAVKLASNRRVVCGTPEYFRRHGRPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           S+ +L KHN + F     +  ++  W       I   R++  L  N    + ++     G
Sbjct: 180 SLDDLLKHNCLAFNL---QGGQNRGWYFQRHGKIVTMRVTGNLDCNDGELLHRWVAESLG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     + +    +   L  ++++   P + +   YP+      +++ F +++
Sbjct: 237 LGWRSTWEIAAQLETGELETVLDEYALPDYDILAVYPQQRYVPARVRYFIDYL 289


>gi|120612464|ref|YP_972142.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120590928|gb|ABM34368.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 314

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 127/284 (44%), Gaps = 9/284 (3%)

Query: 17  SGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHK 76
            GSFT AA +L +S+S++S ++S LE   G+ L  R  R + LT+ G  L   T E +  
Sbjct: 22  EGSFTGAAHRLGVSKSAVSHRVSELEQAAGVALVRRTTRTVRLTDAGRHLVDSTRESFAS 81

Query: 77  LETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDIS 136
           +E +   +++ + +P+G LR+   +  G+  +   +  FL  YP ++++L L +    +S
Sbjct: 82  IERSFANIRDLAQEPNGVLRVTVPVAFGRQHIVPRIPGFLRQYPQVRVELELSDGIRSLS 141

Query: 137 MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF-- 194
           +D  D AIR  + +  +  +   L        A+  YL+ C  P +  +L +HN + +  
Sbjct: 142 LDGFDLAIRHVESVPDTH-VAWPLCPTETVLVASRAYLEACGVPGTPHDLARHNCLHYLR 200

Query: 195 GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---D 251
           G  +P    +          +  P       N+  ++    + G+GIA+LPD+ V     
Sbjct: 201 GASVPSWSFERTGHRADAPRLSIPIAGTFAANNSEALRTLAIAGAGIAMLPDFSVSGEIG 260

Query: 252 NPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFL 292
           N  LVR++            +      +      ++ F  ++  
Sbjct: 261 NGELVRVLPGWRPVGAFGTRISAVRTFSTHVPRAVRVFVAYLRE 304


>gi|186472178|ref|YP_001859520.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184194510|gb|ACC72474.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 303

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 122/300 (40%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F  VA +  F +AA +  +S SS+S  I  LE ++G++L  R  R +T TE G
Sbjct: 5   DLADLKAFVSVAAARGFRNAASRGGVSASSLSEAIRRLEQQLGVRLLNRTTRSVTPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  + ++ T    +      P+G LR+       + +L   L  FL  +P I 
Sbjct: 65  QRLFERLAPAFGEISTALDAINLFRDSPTGTLRLNVPSIAAREILPALLSRFLAGHPGIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCREPL 181
           +++  ++  IDI     D  IR  + ++   +I   +      M A A+P YL+   EP 
Sbjct: 125 VEVTSNDTFIDILAAGFDAGIRYDERLERD-MIAVPIGPPMQRMIAAASPAYLQQHGEPR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  H  I  G      +         D  +       +  +     ++  V G GI
Sbjct: 184 HPDELVWHACI--GHRFESGVLAVWEFTRGDDTVRIVPNGPIVASVIDIQLRAAVDGLGI 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KARD 296
               D  ++   D+  LV I+ D           Y         L+AF +F+    ++RD
Sbjct: 242 VYSFDEFLRPALDDGTLVPILRDWWQSFTGPRLYYASREHMPAPLRAFVDFVLRDNRSRD 301


>gi|116695283|ref|YP_840859.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529782|emb|CAJ96129.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 290

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 132/287 (45%), Gaps = 8/287 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R G+   AA  L + Q+++ R+++ LE+ VG  LF R + G  LT  
Sbjct: 1   MNWDDARVFLALYRDGTLRAAARSLGVDQATVGRRLTALESVVGATLFLRTSSGYVLTMA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +      +       Q   Q    + +G++RI TT  L  + L   L+   + YP++
Sbjct: 61  GESVLDAAERMEQSANDFQRLTQGLDDRLAGEVRITTTDSLAMDFLMPALEALHVKYPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             Q+    + ++++    D AIR  +P  +  LI R+L    M  +A+P YL+   EP +
Sbjct: 121 VWQIDASTRMLNLAKRETDIAIRTARP-DNPDLIARRLAQWPMGLFASPGYLRVHGEPQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+ +   +    E       V  PI   RI    VNS L +      G G+ 
Sbjct: 180 GTAFSGHDLVVYQPYVLGSREPM----LVGEPISGGRIVA-AVNSSLMLRSAIKAGLGVG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRN 288
            +P Y+ K + +LVR+  +      + V+    + L++T +++A   
Sbjct: 235 EIPVYMGKAD-DLVRLWPERCRDVPYEVWLVTHKDLRHTARIRAAIE 280


>gi|71278755|ref|YP_270218.1| DNA-binding transcriptional activator GcvA [Colwellia
           psychrerythraea 34H]
 gi|71144495|gb|AAZ24968.1| glycine cleavage system transcriptional activator [Colwellia
           psychrerythraea 34H]
          Length = 310

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 126/295 (42%), Gaps = 16/295 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AAE+L ++Q++IS QI  LE  +GIKLF R  R L LTE+G 
Sbjct: 8   LNALRAFDASARQLSFTRAAEELFVTQAAISHQIKSLEDHLGIKLFMRKNRALLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +++  L      L        G + +++        L   L  F  L+ DI +
Sbjct: 68  SYYLDIKDIFTSLHEATERLLARGA--KGAITVSSQASFAIQWLVPRLTAFNSLHQDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL---KNCREP- 180
           ++   ++  +   +  D AI   +  +  ++   KL T ++    +P  +       +P 
Sbjct: 126 RIKAVDQPENSLTEDVDIAIYYGRG-RWPNIHADKLHTEYLIPVCSPLLVQENAANGKPP 184

Query: 181 -LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L++++L +H L+          +   W   V           +  +    ++Q  + G 
Sbjct: 185 LLTLEDLSEHTLLH----DTSRKDWKRWFKQVGVKGANVNHGPI-FSHSAMVLQAALHGQ 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GIAL    + K   D+  LV    DV+      +    E  K+ GK+ AFR ++ 
Sbjct: 240 GIALAYSVLAKPDIDSGRLVCPFNDVLVSKNAYFIVCRENQKDIGKITAFREWML 294


>gi|310822511|ref|YP_003954869.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395583|gb|ADO73042.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 304

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 9/286 (3%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V R+ SF+ AA +  +  S++SR+I+ LE+ +GI+L  R  R L LT+ G +       
Sbjct: 2   RVVRTQSFSAAARERGVPVSTVSRRIARLESVLGIRLLERTTRRLRLTDAGREYFGHAER 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
               L      ++E   +P G++RI   I LG   +   +  +L  +P + + L L+ + 
Sbjct: 62  AVDDLAQGTDRVRELQKEPRGRVRIMAPIVLGAA-VSNVIYTYLARHPGVSVDLELNERR 120

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLSIQELDKHNL 191
           +D+  +  D AI   K + S+  + R+L        YA+P YL+    P  +++L +H+ 
Sbjct: 121 VDLLAEGFDIAILTGK-VDSTDFVARELWRATRKLLYASPRYLEARGAPRRVEDLARHDC 179

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
           I                    R   EPR     V+ + +  +  + G GIA+LP+    +
Sbjct: 180 IATRAADGIATWTLAQGRRKQRFAFEPR---FYVSEFSAAHRAVLAGVGIAMLPEVHCAE 236

Query: 252 N---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +     LVR+++     S  V   Y      T  ++   +    + 
Sbjct: 237 DVAEKRLVRVLDGYEGESGGVSLLYRAHRSLTAAVRTCIDHFLAEL 282


>gi|206563054|ref|YP_002233817.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039094|emb|CAR55057.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 296

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 132/291 (45%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR+G+   AA QL++ Q+++ R+I+ LE E+  +LF R      LT  
Sbjct: 1   MNWDNARFFLALARTGTLRGAAAQLNVDQATVGRRIAALEDELSARLFLRTPTLYVLTTA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +     T +  +     + +G +RIATT  LG+  +   +      +  I
Sbjct: 61  GEALLEPAETMERASLTIERRVMGLDEQLAGSVRIATTDTLGKRFVVPAIARVRRKHAGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +  +   +  +++   AD AIR  +P +S  LI R+L  +    YA+  YL    EP++
Sbjct: 121 DVVCVTSAQITNLTRREADLAIRTLRP-ESPDLIVRRLGHLETGIYASRRYLAERGEPVA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D H+L+ +   +   M    W A    P    R+   Q +S + +++  + G GIA
Sbjct: 180 GSAFDGHDLVMYQQPVVPTM----WDALCGEPTSRGRV-MFQTSSTMMLVEATLAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP +     P LVR+M       F V+      L  T +++A    +  +
Sbjct: 235 ELPCFRADTEPELVRLMPQRCN-HFDVWLVAHTDLYKTARVQAVIEAVVDE 284


>gi|34497086|ref|NP_901301.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34102943|gb|AAQ59307.1| probable transcriptional regulator, LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 304

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 120/289 (41%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+VF   A +GS + AA QL LS +  S  +  LE  +G +L  R  R L LT  G +
Sbjct: 8   DDLQVFIRAADNGSLSAAARQLDLSPAVASAALKRLEQALGAQLLARSTRSLRLTLAGER 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      L+   + L++   + SG L ++   DLG+NLL+  L +FL  +P + +Q
Sbjct: 68  YLEHARAALDALQAGSLALEQDRRELSGSLSLSMPSDLGRNLLRPWLDDFLRRHPGLSLQ 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQ 184
           L + ++  D+     D A+R   P + SSL+   L         A+P YL     P + Q
Sbjct: 128 LQISDRVADLYRQPVDVALRYGVP-EDSSLVALPLAADNRRVLCASPDYLVRHGAPETPQ 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     +    L     E +++    +R         L  +    + ++ V G GIA  
Sbjct: 187 ALRGRQCLRLV-LGAAVHERWSFERQGERQTVTVSGRWL-SDDGEIVRRWAVDGCGIAYK 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               V  +     L  ++ D  T    +    P  L  +  + A R  +
Sbjct: 245 SRLDVLADLRAGRLTPLLPDYGTEPTPLCLVTPHRLMLSPAVAALRAHL 293


>gi|307728311|ref|YP_003905535.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307582846|gb|ADN56244.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 347

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 123/297 (41%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SF+ AA++L ++  ++S QI  LE E+G+ LF R  + + LTE G 
Sbjct: 9   LNAIKAFEAAARHESFSRAADELFVTHGAVSHQIRALEAELGVALFARDGKRVRLTETGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L     EL+    +   +L ++         +   +  F+  +P   +
Sbjct: 69  RYANQVRAALAALCDATRELRAGDRER--RLVVSMLSSFAARWVTPRVGSFIEAHPQWDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N   D + D  D AIR     + + L    L+        AP +    + P +  
Sbjct: 127 ELLSTNALTDFARDDVDVAIRFGYG-KYAGLHSELLLEEIFFPACAPTF-NGGKLPATPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL    L+   D + +   D   L        EP+   L  +S   ++Q  + G GIAL 
Sbjct: 185 ELAHLPLLRSDDELWRPWFDAAGLTDW----TEPKRGVLYQDSSN-LLQAAIDGQGIALT 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         LVR+        +  YF  P  +  T K+KAFR+++F +   +K
Sbjct: 240 RRSLAMHEIAAGRLVRLFNVDGPSPWQYYFICPPHMLETAKVKAFRDWVFAEVGRFK 296


>gi|116050667|ref|YP_790513.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585888|gb|ABJ11903.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 309

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 122/292 (41%), Gaps = 8/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D++     +A  GSF  A   L    S +S+++  LE  +GI+L  R  R L  T++G +
Sbjct: 10  DEVATLLALAEHGSFAAADRALQRHPSVLSKRLGALERRLGIRLVERTTRQLRFTDEGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    L+  + E    + +  G+LRIA    +G+  L   L EF L +P + ++
Sbjct: 70  LASRFRQAVDLLDEAEHEASLGAAQLRGRLRIALPSAMGRLWLGPLLAEFALAHPQVVLE 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                + +DI  +  D AIR+ + +  S L+ R+L        AAP YL+    P    +
Sbjct: 130 TDYSERFVDIIAEGFDLAIRVGE-LADSRLVARRLCAHRRILGAAPDYLERHGVPRIPAD 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + F  L          L   D          +  N   +++     G GI    
Sbjct: 189 LAAHNCLGFSGLHSYPEWK---LTRQDEQQPVRVRGSMVSNDNEALLCAARQGLGIFAAG 245

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++++  +     LVR++ +        VY   P A   T    AFR ++  +
Sbjct: 246 EWLMSRDLEAGRLVRVLPEWQLDADAGVYLVRPSARYATAAASAFRQWVEAR 297


>gi|307729103|ref|YP_003906327.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583638|gb|ADN57036.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 302

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 139/298 (46%), Gaps = 9/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA +L +S++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDVNSLTLLVEILDAGNLSEAARRLKMSRANVSYHLNQLERSVGLQLVRRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + + L   +  +        G++R++     GQ ++ G L EF  LYP I
Sbjct: 61  GLQLYEHGRAIQNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMSGWLIEFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R + ++   A A+  + ++   P+ 
Sbjct: 121 VLDVLFENRVEDLMRDEVDIAVRIMSE-PPQNLVARDMGSVRYVACASRSFAESRGMPVR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL    LIT   +  +              + EP    +   ++L + Q  + G G+ 
Sbjct: 180 LDELRTAPLITAAVVGRQLRVAAYLRDERHEVLLEP---TIISENFLFLRQAVLAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +LPDY+V D+    ++V  +++     F   +Y  Y     +T     F +FI  +AR
Sbjct: 237 ILPDYVVHDDLKRGDVVTTLDEWRLSIFGTNMYMLYMPNRHHTRAAATFIDFILDQAR 294


>gi|167717873|ref|ZP_02401109.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 305

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 136/299 (45%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +  +L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVVFENRIEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPGFAATHGMPTE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    +IT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLE--PTLISENFLFLRQAILAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++PDY+V D+      V  ++      F   +Y  Y     +T     F +F+  +AR+
Sbjct: 237 IVPDYVVHDDVRRGAAVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEEARN 295


>gi|194367725|ref|YP_002030335.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194350529|gb|ACF53652.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 297

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 142/296 (47%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +R F  V  +GSFT AA+ L +S+++ ++ +  LE  + ++L  R  R +++T 
Sbjct: 1   MDRFEAMRAFARVVETGSFTRAAQTLQISRTTATQLVQQLEAHLRLRLLNRTTRRVSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   + +  +LE  +  L +++ +P G+LR+       +  L   L +F   YP+
Sbjct: 61  DGAAYYPRIARLLAELEEVEGGLGDAATQPRGRLRVDVPGPYARLRLVPALPDFQARYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++++D+  D  DC IR   P    +L+ R L  + +  +A+P Y++    P 
Sbjct: 121 IQLDIGVSDREVDVIADNVDCVIRGGTP-ADPALVARPLGALPIGFHASPGYVQRFGLPA 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + L+   H+++ F          F      +R   + R   +  +   + +   + G 
Sbjct: 180 DPRALEGPDHHMVGFLSPRSGRARVFTAQRGDERVEVQGR-YTVGFDDGNAYLAAALAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  LP Y+ + +     L+ +++D   P   ++  +P     + +L+ F +++  
Sbjct: 239 GVVALPSYMAEPHLARGELLPVLQDWQLPPMPMHVMFPPNRHKSQRLRVFIDWVVE 294


>gi|118764448|emb|CAL80827.1| LysR:LysR substrate binding domain [[Polyangium] brachysporum]
          Length = 344

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 10/295 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L VF  V  +GSF+ AA  L L+ +++SR ++GLE E+G +L  R  R L LT 
Sbjct: 1   MDKLHALSVFTKVVDTGSFSRAASALGLTSAALSRTLAGLEAELGARLLQRTTRRLALTV 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +  +++     +   + +P GKLR+          +   L  F   YP 
Sbjct: 61  AGEIYLDRARRILREVDEADAAVAAMAAEPRGKLRLVGPSAFLVYEVARRLPAFTERYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQ--SSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           + +++      +D      D +I + K        L  R+LV  H+   A+P YL+    
Sbjct: 121 VSLEVTPRGYGLD-VDSRYDVSIEIAKEDSRLQDDLAVRQLVQTHLIPCASPSYLRRTGP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
               +EL + + +     +P   + + +    +    EPRI  LQ     S++   + G 
Sbjct: 180 VAHPRELLERDCLVAD--VPGVPQVWRFERDNEAIELEPRI-ALQARHGESLLAAALAGM 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GIA LP ++V+       LVR++ +  T  +T+Y   P+   N G  +AF +F+ 
Sbjct: 237 GIASLPTFMVRHALQRGALVRLLPEWRTTPYTLYAAMPDHGPNPGSTQAFVHFLV 291


>gi|307294936|ref|ZP_07574778.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306879410|gb|EFN10628.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 299

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 120/295 (40%), Gaps = 12/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     LR F  +    +F+  AE+LH S ++++R++  +E   G  LF+R  R L  T
Sbjct: 1   MSDLLIALRTFVRLCEKPNFSRVAEELHASHTTVARRLDQVEAHFGAVLFHRTTRRLIAT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +  +L      +   LE  + +      +P G +RI  T  LG + +   L E    YP
Sbjct: 61  PEADRLLIHARAMLDALEGAERDFGPVRGEPGGLVRIGFTTALGLHYV-ERLGELTARYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q    + +   D+  D  D A+R+  P+    L+   L  +     A P YL     P
Sbjct: 120 ALQFDCAMTDWQRDMVEDRLDLALRVG-PVGDDRLVVHPLGRLPRLLVARPAYLAVHGMP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S ++L  H  I +           +    V            + +S  ++ +  + G G
Sbjct: 179 ASAEDLPAHQCIAYAYGDVPARWTIDGRERV-------VGGAFRSDSSEAVHRAALSGLG 231

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           IALLP   V+D+     L  ++ D +     +   +P   +   + +A  +F+  
Sbjct: 232 IALLPAVRVRDDIAAGRLAPVLPDSVIAPLDIAAVHPSHKRPAPQARAVLDFLKA 286


>gi|330942143|gb|EGH44799.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 304

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 122/292 (41%), Gaps = 5/292 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F  +AR  SF  A  ++ +S S++S  + GLET +GI+L  R  R +TLT  G
Sbjct: 7   NLADIVYFLAIARHQSFRKAGLEVGISASALSHAMKGLETRLGIRLLNRTTRSVTLTAAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L  + S   + +      L     +P+G++R+    D  + LL   L  F+  YPDI+
Sbjct: 67  EELQGLISSPVNDIGQALETLNRLRDEPAGRIRLNVLSDGAKLLLGPVLPVFVDRYPDIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L + N+ +DI  D  D  IR    + +  + QR    +      AP YLK    P   
Sbjct: 127 VDLTVTNRMVDIIGDGHDAGIRFGGTVPADMIAQRLSPDVAWAVVGAPDYLKRFGIPKHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  +       +        +   + +       + ++     +   + G G+  
Sbjct: 187 SDLYQHRCLRIRLGNARIYHW--QFSKEGQQLEIDAPGAVTIDETRVGVAMTMRGVGLMY 244

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +P ++V+      +L R++ED        +  Y    +    L+   + I  
Sbjct: 245 VPAWVVERQIAEGSLHRVLEDWTHHEPGFHIYYSSFRQLPVGLRLLIDLIRE 296


>gi|167578982|ref|ZP_02371856.1| transcriptional regulator [Burkholderia thailandensis TXDOH]
          Length = 296

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 116/290 (40%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +R+F  V ++GS + AA +L +   ++SR+I  LE ++ ++L  R ARG  LTE 
Sbjct: 1   MDLNDVRIFVGVVQTGSLSGAAARLEMPLPTVSRRIRALEKQLRVQLLERTARGTRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++L+   S     L   +  +     +  G+LR++             L  F   YPDI
Sbjct: 61  GTRLYEHASRGVEILAEGEQAVVSDQARLKGRLRLSLPPAFEAWW--ELLSAFQKRYPDI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++      + +D+  D  D A+R+   I   +++ R L+       A+P  +     P  
Sbjct: 119 RVHAYATERRVDLIEDGIDVALRVGA-IAHEAMVARALLAYRHVLVASPSLVDALGIPEV 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +     +               T +        + L  N Y+ +    + G  + 
Sbjct: 178 PDDLHRFPCAIWSSAANFSRGWRLGDRTFE------PDAALSTNDYMHLRSRAIAGEVVT 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LP ++  +      L  ++     P   V   YP     +  ++A+  F
Sbjct: 232 ELPPFLAAEPIQQGRLTALLCAYPLPEQHVNLLYPSHRHPSAIVRAYLEF 281


>gi|264679245|ref|YP_003279152.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262209758|gb|ACY33856.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 304

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 130/300 (43%), Gaps = 13/300 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T A+E L L+ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKTTLDELQAFVAVVDTGSITAASELLDLTISATSRTLGRLEEKLQTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+GS        +   ++  + ++    ++P+G+LR+        ++L   +  F   YP
Sbjct: 61  EEGSTFLHSARAIIASVDAAEEQMAARRMRPAGRLRVDAATPFMLHVLVPLIAGFRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++++L  +   ID+     D A R+   ++ S+L  R + T  +   A+P YLK    P
Sbjct: 121 EVELELNSNEGIIDLIEKRTDVAFRIG-VLKDSTLHARPVGTSQVRVLASPAYLKRHGTP 179

Query: 181 LSIQELD----KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
               +L     +H L+ F    P+ + D+         +       +  +S  ++    +
Sbjct: 180 TEPSQLLLHDGQHALLGFTQ--PEALNDWPLRDAAGNILRIQ--PTIASSSGETLRHMAL 235

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFL 292
            G GI  L D++ +++     LV++  +       ++   Y        ++  F + +  
Sbjct: 236 AGLGIVCLSDFMTREDRRSGKLVQLFPEQTLDVRQSINAVYYRNTALAARITCFVDHVME 295


>gi|163857273|ref|YP_001631571.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163261001|emb|CAP43303.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 307

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 127/297 (42%), Gaps = 9/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  +G+ + AA +L ++++++S  +  LE  VG++L  R  R +  TE 
Sbjct: 1   MDTKALTLLVEILDAGNLSEAARRLKMTRANVSYHLGQLERAVGMQLVRRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL+R    +  +L      ++     P G++R++     GQ ++   L EF   YP I
Sbjct: 61  GLKLYRHGCSIRDELAAAHESVETLGKTPQGRVRLSVPSGYGQFVMAPWLLEFKRNYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N   D+  +  D A+R+        L+ R+L  +     A+P Y      P  
Sbjct: 121 VLDVLFENSVEDLLREEVDIAVRITSE-PPGHLVARELGRVRYVVCASPAYAARRGLPQR 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            + L    +I+   +           +   +   +P I+     +Y  +    + G G+A
Sbjct: 180 PEALCGAPVISAAVIGRPLRLSAYQGSQRQQVTLDPTIA---SRNYPFLRDAALAGLGVA 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++PDY+V ++     L+  + D        ++Y  Y  +  +   +     FI  KA
Sbjct: 237 VVPDYVVYEDVAQGRLLTALNDWRLSIFGRSMYLLYMPSRHHPRAISMLIEFIVDKA 293


>gi|119472822|ref|ZP_01614746.1| putative transcriptional regulator with periplasmic binding protein
           domain (LysR family) [Alteromonadales bacterium TW-7]
 gi|119444717|gb|EAW26023.1| putative transcriptional regulator with periplasmic binding protein
           domain (LysR family) [Alteromonadales bacterium TW-7]
          Length = 295

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 131/292 (44%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +    L  F  V  +     AA +  LS +++S ++S LE E+   L +R +R + L+  
Sbjct: 2   YSLSDLETFIAVVENKGVLAAAREQRLSPATVSHRLSKLERELATVLVFRDSRRVRLSPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +   L   +  +   S   SG LR+     +    +   L EF   +PD+
Sbjct: 62  GEVFYTRIGAIIEALRDAEHSIGARSSSVSGLLRVTMPPWVFSKYVMPRLNEFEHAFPDL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++  ++ ++ +++  D  D AIR+ + +  S L+ RK+V       AAP Y+K    P +
Sbjct: 122 KLDFLITDQFVNVVDDAQDVAIRVGQ-LNDSGLLSRKIVNNSRVLCAAPSYIKKHSMPTT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I EL+KH  +       + ++ ++    +     + R     +++  ++ Q  + G GIA
Sbjct: 181 ISELEKHFWVCLP--WQRQLKLYDAQQKIHTFNAQTR---FTISNSDNMTQAAIAGHGIA 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           +     + D   N  LV +M +V+  S   V+F  P+    T K   F +F+
Sbjct: 236 IKSRLAINDELKNGTLVEVMPNVLAQSDAPVWFLRPQNSLTTRKTDVFFDFM 287


>gi|289646329|ref|ZP_06477672.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 271

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 114/267 (42%), Gaps = 11/267 (4%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
           +ISR+++ LE ++G++LF+R  R ++LT +G         + H  ET +  L+  +   S
Sbjct: 2   AISRRLAALENDLGVRLFHRTTRSVSLTPEGEVFLPHAKTMLHASETARATLKGDTGTAS 61

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G LR+      GQ ++   L   +   P + I L L +  +DI     D AIR+   I+ 
Sbjct: 62  GVLRVTAPSVFGQTVIMPLLPVLMQENPALSIDLTLSDSIVDIVGMGIDVAIRIA-TIRD 120

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
           S+L+ R L        A+P YL    +P  ++EL  H  I    +               
Sbjct: 121 SALVARSLAPNARVVCASPDYLARHGKPALLEELRHHQGIALHAMPWWS------FTKNG 174

Query: 213 RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI-MEDVITPSFT 268
            PI          NS  ++   C  G G+A+L  + V+      +L ++  ED +    +
Sbjct: 175 EPITIRAQGPFSANSVEAVRTACKQGMGLAMLTYWDVRQEINEGSLQQVDFEDAMPEQLS 234

Query: 269 VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V    P   +   +++ F + +    +
Sbjct: 235 VTAVLPTRQRVPHRVRLFIDRLEAALK 261


>gi|123443844|ref|YP_001007815.1| LysR family regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090805|emb|CAL13687.1| LysR-family regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 305

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 140/300 (46%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LRI       Q+++   +  F  LYP
Sbjct: 61  EEGELFLTHARQILGAVDDAEEQIALRRLKPAGRLRINAAAPFMQHVIVPMISGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRIGA-LRDSTIHARLLGASRVRILASPDYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +I +L  H+L+ F        E  N  +    P G   I+  L  +S  ++    + G 
Sbjct: 180 HTIDDLANHSLLGFTQP-----EFLNQWSLPHLPGGRTLITPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI  L D++ +++     LV +M D I  ++  +   Y    +   ++  F +++  + +
Sbjct: 235 GIVELSDFMTREDQLAGRLVEVMADQILETWQPINAVYYRNTQLAARITCFLDYVSEQIK 294


>gi|238799137|ref|ZP_04642591.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC
           43969]
 gi|238717008|gb|EEQ08870.1| Transcriptional regulator, LysR family [Yersinia mollaretii ATCC
           43969]
          Length = 315

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 127/294 (43%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  V R  SFT AA +L ++ S++S  I  LET +G++L  R +R +  TE G
Sbjct: 13  DLADLNAFRAVERLKSFTKAAVELGITTSALSHAIRNLETRLGVRLLNRTSRTVAATEAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    +  + ++     E+     +P G+LR+    D  + ++  +L +FL  +PD++
Sbjct: 73  ASLAMRLNVGFREIGEALDEINRLRDRPVGRLRLNILSDSARLIMARHLPKFLNQFPDVE 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLS 182
           +++ +D++ +DI  +  D  IR    +    L+   L       A A+PHYL     P++
Sbjct: 133 VEISVDDRMVDIVSEGFDAGIRFGGTVP-EDLVAINLGEELKWVAVASPHYLYRRPIPIT 191

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H  I          +        +R I  P   C  V+     ++  +  +GIA
Sbjct: 192 PEDLRSHACIQLRTGQGTIYKWEFRKGEEERVIDVPGKVC--VSETELAIELALASAGIA 249

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              +  V     + +L  I+ +       +   YP   +    L    N +  +
Sbjct: 250 YCLEDRVATYLKSGSLRVILPEWSPVEPAMQLYYPGHRRIPQGLPELINLLREE 303


>gi|167736539|ref|ZP_02409313.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei 14]
 gi|254182270|ref|ZP_04888867.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184212808|gb|EDU09851.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 322

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 127/300 (42%), Gaps = 12/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G 
Sbjct: 7   LSALETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I
Sbjct: 67  LYLATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +  +DI  +  D A+R+      S ++ + + +      A+P YL     P +  
Sbjct: 127 ELSLSDHYVDIVGEGFDLALRMGNYDLPSQIV-KPIGSNRGLLCASPGYLARRGRPTAPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +    P     + +     R   EP+   L  + Y   +   + G+G+   
Sbjct: 186 DLAQHDCVIYRH--PTLANTWTFERGGVRARLEPK-GPLVTDDYSLALAAALDGAGVLPC 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P + V D      LV ++ D    S +     +   YP + + + K++     +  +  D
Sbjct: 243 PQWSVVDALEAGRLVPLLVDWRFESASFGEDRICAAYPSSRRGSTKIRRLVERVQARLAD 302


>gi|308048924|ref|YP_003912490.1| LysR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307631114|gb|ADN75416.1| transcriptional regulator, LysR family [Ferrimonas balearica DSM
           9799]
          Length = 313

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 131/296 (44%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    +L++F+ V + GSFT AA    +  S++S+QI  LE  +G++L  R  R  +LT
Sbjct: 1   MSLT-HQLQLFHDVVQQGSFTKAAALHQMDNSALSKQIKKLEASLGVQLLNRSTRSFSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G ++   TS +   L+  Q        +P G L+I   +  GQ  LQ  +  F+  YP
Sbjct: 60  SAGEEILAQTSVLMETLDQIQSIADAYQSEPKGILKITAPVFFGQVYLQPVVARFMQRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +QI L LD++   +  D  D A R+ K +  S+LI RKL   +    A+  +++    P
Sbjct: 120 AVQINLTLDDRRAHLIADRYDLAFRVGK-LVDSNLIARKLANTNFALLASRDFIERHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            + + L     + + +      +           +   R+   L+V+   ++M     G 
Sbjct: 179 HTPEALLALPAVIYSNGDLTLDQLVMSEQPHSEVMKRHRMRGNLKVSDIRTMMDAVEAGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSF--TVYFCYPEALKNTGKLKAFRNFI 290
           G  L+  + ++    +  LV ++ D    +    +Y  YP   + T  +  F   +
Sbjct: 239 GYGLVDLFHLERPISDTGLVPLLTDYRLSTLDTGIYALYPHRKQ-TPLVTEFIRHV 293


>gi|153830175|ref|ZP_01982842.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148874354|gb|EDL72489.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 316

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 134/296 (45%), Gaps = 12/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R+++ L LT++
Sbjct: 12  MKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLTKE 71

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E++ ++E  Q E +++     G++ I+  +   ++ L     EF  L+P++
Sbjct: 72  GEQLFHSYAELFAQIERKQEEAEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHPNV 131

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC----R 178
            +++ + +     S    D A+R   P   S  + RKL        A+P           
Sbjct: 132 TLRMQVGSGLDYFSQRDLDIALRFG-PQPESDWVARKLARNPSVLCASPELAAKLSTATP 190

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                ++L +H L++    +P          +V + +     + L  +   +I+Q  + G
Sbjct: 191 ALAHPEQLKEHPLLSLNHKLPWIFHHH----SVAQKVQFIPTARLCSDELDTIVQATLQG 246

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GIA LP  +++    +  L+ ++ +       VY  +P+      + +A  ++I 
Sbjct: 247 MGIARLPRGLMEPLLRSGQLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDYIM 302


>gi|124268467|ref|YP_001022471.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124261242|gb|ABM96236.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 298

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 122/288 (42%), Gaps = 9/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +  F  +  +GS + AAE    S +++ R ++ LE  +G++L  R+ R L LT++G+
Sbjct: 4   LKAMATFVRIVEAGSLSAAAEGAGQSPAAVVRALAALERHLGVRLLNRNTRRLALTDEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +    +  +  + +  +         P G LR+   ++ G+  +   +  FL  +P ++I
Sbjct: 64  EFLAWSRRILAEFDAVEHGFDARRHSPGGLLRLTAPVEFGRRHVAPLVNAFLAAHPAMRI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++  D+  +  D A+R+ + +  SS++   L    +   A+P YL+         
Sbjct: 124 ELTLADRVADLLDEGLDLALRIGR-LPDSSMVAVPLGRTRLVVCASPAYLREAGPVAHPS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     I F                   P+ +   + L  N   +    C  G GIA L
Sbjct: 183 ALRGLACIAFAPHGRHWH-----FQDRGAPLTQTVSARLVANQVQAASLACTQGLGIARL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
             Y V D   +  L+R++     P   +   YP A   + +++ F ++
Sbjct: 238 LHYQVADELADGRLLRLLPAFEPPDLPIQLVYPHARLLSPRVRQFIDW 285


>gi|222084621|ref|YP_002543150.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722069|gb|ACM25225.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 309

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 120/296 (40%), Gaps = 11/296 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VAR+  F   A     S S +S  +  LE E+G++L  R  R +  TE G +L 
Sbjct: 1   MSAFVAVARAKGFREGARLSGKSPSGLSEAVRRLEAELGVRLLNRTTRSVVPTEAGERLL 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++E     +     +P+G LR+   I   + +L   +  FL  YPDIQ+++I
Sbjct: 61  ERLGPALSEMEAAFDVVNGFRDRPAGTLRLNVPISAARLVLPDIVPRFLAAYPDIQLEII 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCREPLSIQE 185
            ++  +D+     D  IR  + ++   +I   +          A+P YL     P    E
Sbjct: 121 AEDSFVDVLAAGCDAGIRYDERLEQD-MIAIPIGPRTQRFATAASPSYLDLHGRPEHPSE 179

Query: 186 LDKHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           L  H  +       L+P C  + +       P G   +S     +   ++   + G+GI 
Sbjct: 180 LINHACLRGRFSSGLMPPCEFERDGEIVRITPTGPLIVSI--GGATDLVVAAAIAGTGIV 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L +  ++   D+  L  ++E         +  YP        L+AF +FI   A+
Sbjct: 238 YLFEEWLRPHLDSGALEPVLEPWWQSFSGPFLYYPGRRLVPAPLRAFIDFITTSAK 293


>gi|312797422|ref|YP_004030344.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312169197|emb|CBW76200.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 313

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 118/305 (38%), Gaps = 16/305 (5%)

Query: 1   MSF----DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           M+     +   L+ F   AR  SF+ AA++L ++  +IS QI  LE E+G+ LF R  + 
Sbjct: 1   MNLRHLPNLGTLKAFEAAARLESFSRAAQELFVTHGAISHQIRALEAELGMPLFKRDGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           + LT  G +           +      ++    +   +L I+         +   +  F+
Sbjct: 61  IALTGCGRRYAAQVRAALFDIAAATDAVRAGDRER--RLVISVLPPFAARWMTPRIGRFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P+I ++L+  N     + D  D A+R         L    L+         P +   
Sbjct: 119 ERHPEIDVELLSTNAITHFNRDDVDVALRFGGG-NYPGLFVEPLLDEVFFPVCTPSF-NG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L    L+   D +         L+       EPR   L  +S   ++Q  +
Sbjct: 177 GQLPKTPADLAGLTLLRNDDEMWGPWFQAAGLSGW----SEPRRGVLYQDSS-MLLQAAL 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GIAL+   +      N  LVR+ +       T +F  P  L  T ++     ++  +
Sbjct: 232 EGQGIALVRRSLAMQEVINGRLVRLFDIDGPSPGTYWFVCPPPLLETRRVTVLLEWLREE 291

Query: 294 ARDWK 298
           A  ++
Sbjct: 292 AGRFR 296


>gi|160896839|ref|YP_001562421.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362423|gb|ABX34036.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 305

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 136/297 (45%), Gaps = 10/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  SG+ + AA +L ++++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDLNSLTLLVEIIDSGNLSQAARKLKMTRANVSYHLTQLEKSVGVQLVRRTTRRVEPTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +++     + +++ + +  +       +G++ ++     GQ ++   L EF  LYP I
Sbjct: 61  GMRMYEHGRAIQNEMMSARETITSLGQGMAGRVGLSVPSGYGQIVMSDWLIEFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D   D  D AIR+ +     S+I R L  +H  A A+  Y +    P +
Sbjct: 121 VLDVLFENR-ADHLRDEVDIAIRVIQE-PPLSVIARSLGNVHYVACASREYAQQHGLPTT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL    LIT G +  +              +  P    +    +  + Q  + G G+ 
Sbjct: 179 LYELRNSPLITAGVMGRQLRLSAYQGTDRQEVLLAP---TMISEHFPFLRQGILAGLGVG 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+PDY+V+D   +  +V  +++     F   +Y  Y      T  ++   +F+  KA
Sbjct: 236 LVPDYVVQDKVASGEVVLTLQEYRLSIFGTHMYLLYLPDRHQTRAVRTCIDFLLAKA 292


>gi|84385422|ref|ZP_00988454.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01]
 gi|84380019|gb|EAP96870.1| transcriptional regulators, LysR family [Vibrio splendidus 12B01]
          Length = 309

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 127/291 (43%), Gaps = 10/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V + GSFT AA    +  SS+S+QI  LE ++G++L  R  R  +LT  G
Sbjct: 3   NTNQLLLFLDVVQQGSFTKAATLHDMDNSSLSKQIKKLEQDLGVQLLNRSTRSFSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +   T  +   +   Q        +P G LRI + I  GQ  LQ  + +F+  YPD+Q
Sbjct: 63  EDILAQTYVLKDTINQIQGIADSYQSEPKGVLRITSPIYFGQQYLQPIITQFMRKYPDVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L LD+K  +I     D A R  K ++ S+LI +K+   +    A+  ++K   EP + 
Sbjct: 123 IVLSLDDKIANIIAGQFDIAFRFSKLVE-SNLIAKKIADSNFMLVASNDFVKQHGEPKTP 181

Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           Q+L     + +  GD+    +                R    +V+   +++     G G 
Sbjct: 182 QDLLALPAVIYTNGDMTVDHLRISEEPHGNTFQSLTIR-GNYKVSDVRTMVSCVKDGLGY 240

Query: 242 ALL---PDYIVKDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFR 287
             L     Y       LV ++ D    +    +Y  YP   + T  +K F 
Sbjct: 241 GFLDQSNLYASMKELGLVTLLPDYPISTIDTAIYAVYPHRKQ-TKLVKEFI 290


>gi|254236482|ref|ZP_04929805.1| hypothetical protein PACG_02476 [Pseudomonas aeruginosa C3719]
 gi|126168413|gb|EAZ53924.1| hypothetical protein PACG_02476 [Pseudomonas aeruginosa C3719]
          Length = 306

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 121/293 (41%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L+VF   + SGS + AA QL +S +  S  +  LE+E+ ++LF R  R L LT +G 
Sbjct: 4   YDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTPEGD 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  LQ    + +G L+++   D G+NLL   L EF   YP + +
Sbjct: 64  AFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D AIR       SSL+   L         AAP YL    EP   
Sbjct: 124 RLLLGDRVTDLYRQPVDVAIRYGA-TADSSLVALPLAPDNRRVLCAAPGYLAERGEPRQP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN + +   +   + D        R +          +    + ++ + G G+  
Sbjct: 183 DDLREHNCLLY--QLGGRVHDRWAFQRGRRSLTLTVAGDRVCDDADVVRRWALAGKGLVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V ++     L  ++ +    +  +        + T  +   R F+  +
Sbjct: 241 KSWLDVAEDVRAGRLRLLLPEWQGEATPMNLLCTHRAQLTRPVTLLRAFVRER 293


>gi|328470331|gb|EGF41242.1| LysR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 295

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 138/301 (45%), Gaps = 17/301 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVQSYIRVIEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLILD--NKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I +QL      +  ++S+   D  I R  + + S S     L       YAAP YL+   
Sbjct: 121 ITLQLTTTLPGQLPELSL---DLFISRHLEQLNSLSFKATPLFEHKAQFYAAPSYLEKYG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P +++EL KHN++ +G+   + ++        +R             +  ++      G
Sbjct: 178 TPQNVEELTKHNILIWGEKPAREIK-------TNRGKRVSLSGNFATTNPEALFHGAKRG 230

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI +  + ++KD+     LV I+ DV     TVY  YP+      + + F +++  +  
Sbjct: 231 MGILMTNNVMIKDDLKSGALVPILPDVTADEATVYAYYPKLDYQHTRTQLFLDYLKSRLE 290

Query: 296 D 296
           +
Sbjct: 291 E 291


>gi|319784248|ref|YP_004143724.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170136|gb|ADV13674.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 300

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 122/290 (42%), Gaps = 6/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF    R  SFT A  +L ++Q+++S  + GLE ++G KLF R  R + LTE G + H
Sbjct: 14  LIVFEAAGRLSSFTAAGRELGMTQAAVSYAVRGLEEQLGAKLFQRRHRQVLLTEAGERFH 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S     +  +  +L+       G + +A +   G   +   L++F    P I +++ 
Sbjct: 74  ADVSLGLSHIRKSAEDLR--LQATGGHVTLAASTAFGSFWMMPRLQQFRDELPGIDLRIQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++D+DI  +     +R   P          L    +   A   Y      P S  EL 
Sbjct: 132 TADRDLDIIAEGIPLGVRGGAPRDWPDYHSLPLADEEIFPVAGTSYAAKFGLPRSAAELA 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H LI   +   +      W  +    + +     L++N Y  ++Q  + G GIAL   +
Sbjct: 192 THRLIHLEEPYREAASWDEWFQSAGANLSD-TARGLRINDYGLVIQGVMEGQGIALGWRH 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +    +  LV + + V+      Y  +P+  + +   +  R+++  +A
Sbjct: 251 LAERLLASGLLVPVTDHVLKTGKAFYVVWPKNRELSDNARKVRDWLAAQA 300


>gi|163750492|ref|ZP_02157731.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161329813|gb|EDQ00801.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 314

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 137/292 (46%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + + +F+ +  +GS   AA+ L+L +S++SR++  LE E+ +KLF+R +R +TLT  
Sbjct: 1   MKTEDIALFHRIVETGSLVDAADLLNLPKSTVSRRLQALEDELKVKLFHRQSRAMTLTAS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +  T  +   LE T +EL ++  +  G LRI          +   + EF+  +P++
Sbjct: 61  GSHFYDKTLAILGDLEQTLVELTDTQAEIGGHLRILMFPVPELLDIANGIFEFMDHHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++LI+  +  D+  +  D A  +      + ++ R+++   +H  A+P YL     P+ 
Sbjct: 121 TVELIVSTEPQDMIRNNIDLAFMVEDSFNENEMVAREVINEELHFVASPDYLAKAGTPVL 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +E+++HN I F     +   +  +       +       L +NS    +Q  + G GIA
Sbjct: 181 PEEIEQHNSILFRYPNGRIFSEVPF----GNDMKIAVKGNLCLNSIQLCLQASLTGRGIA 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LP  + +++     L  + EDV       Y  YP     +   + F + + 
Sbjct: 237 FLPTKLTREHVDRGELTILFEDVEPYIGKCYLVYPSRRFISLASQRFIDHML 288


>gi|33593404|ref|NP_881048.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33572760|emb|CAE42690.1| probable LysR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332382813|gb|AEE67660.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 306

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 123/289 (42%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR-GLTLTE 61
            DWD LR F  VAR+   + AA +L +  ++++R++  LE E+   LF +    G  LTE
Sbjct: 2   LDWDSLRYFLEVARTQRVSAAARKLGVEHTTVARRVRALEAELDSLLFEKSRSAGYVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   + T +  L       SG +RI  T   G  +L     +F   YP 
Sbjct: 62  DGQRLFVFAEQMESTVHTARENLSGIGQALSGHVRIGATEGFGSYVLTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    +  KL    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCTKLCDYTLMLYGTPAYLARHAPIR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  HN I + D +      F+        +       L+  S ++     + G  +
Sbjct: 181 ERADLAGHNFIGYVDEL-----LFSERLRYLEDVLPNSQVVLRSTSVIAQYHATLQGQSL 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I   +P L  ++ D I  + + +    E L+   ++ A   F+
Sbjct: 236 AILPCFIAAQDPRLTPVLPDDIAITRSFWMYCHEDLRRLKRVSALWEFM 284


>gi|154244921|ref|YP_001415879.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159006|gb|ABS66222.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 309

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 4/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F      GS   AA +L  S ++I+R ++ LE  +G +L +R  R L LT+ G 
Sbjct: 4   IDAMTAFVTALDEGSLARAARRLGRSPAAITRAVAQLEEHLGTRLLHRTTRALHLTQTGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +   L    +        P G L +   +  G+  +   +++ +  YP ++ 
Sbjct: 64  LYLASCRAILADLAEADLLAAGERTDPRGLLSVTAPVMFGRLHVAPAIEDLIEAYPALEA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L ++ + +  +  D A+R+   +  SSL+  ++  +     A+P YL     P    
Sbjct: 124 RLLLVDRVVHLIDEGHDAAVRIGH-LPDSSLVATRVGEVRRVVCASPDYLATRGTPTVPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H +I+F  +    +  F+   +          +C  VN+  + +     G GI  +
Sbjct: 183 DLSTHRIISFSQVTENAVWTFSAGPSGGARKQVSVAACFTVNTADAAIAAAARGRGITRV 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y V++   +  L  ++E        V+  YP       KL+AF +F+  + R
Sbjct: 243 LSYQVEEAVADGRLRILLEAFEGEPLPVHVVYPGVRLQAAKLRAFVDFVVPRLR 296


>gi|257093163|ref|YP_003166804.1| LysR family transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045687|gb|ACV34875.1| transcriptional regulator, LysR family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 313

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 122/295 (41%), Gaps = 8/295 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   +   LRVF + A SGS + AA+ L LS +  S  +  LE+++G  L  R  R L L
Sbjct: 1   MKIRNLQDLRVFVLAADSGSLSTAAQMLGLSPAVASTSLKRLESDLGALLLVRSTRSLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +  G +L          L     ++ +       +LR++   DLG+N L   L  FLL +
Sbjct: 61  SPPGERLLPAARCALAGLSDALEDIAQVRGSLREELRVSMPSDLGRNHLLAWLDSFLLQH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCR 178
           PD+ ++  + ++  D+     D AIR    +  S L+   +++       AAP+YL    
Sbjct: 121 PDVTLRTHVSDRPADLYRQPVDIAIRYTD-MADSGLVALPILSGNRRVLCAAPNYLARHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P    +L +HN + F   +   + +    +   + I          +    + ++ + G
Sbjct: 180 VPAVPGDLSRHNCLRF--RLGNALHEHWRFSLEGKEIVVTVNGNRIADDGDVVHRWALAG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GIA      V  +     LV +  +  T +  +     +  + +  +   R+ +
Sbjct: 238 HGIAYKSALDVGKSIAAGLLVPLCTEWTTEAAPLSLVCADRRQLSPLVMLLRDHL 292


>gi|86146046|ref|ZP_01064373.1| putative transcriptional regulator protein [Vibrio sp. MED222]
 gi|85836251|gb|EAQ54382.1| putative transcriptional regulator protein [Vibrio sp. MED222]
          Length = 292

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 135/296 (45%), Gaps = 11/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L++F  V   GSFT AA  L L ++++SR+I+ LE  +GI+LF+R  R L+LT+ 
Sbjct: 1   MKIEDLKLFTTVVELGSFTAAANALDLPRANVSRRINDLEKSLGIQLFFRTTRSLSLTKS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++        L+         S    G+++I    +   +++Q  L +F  +YP +
Sbjct: 61  GELYYKELLNALSALDKANHVASNLSEVAHGQIKIGLLPE-TSDIMQSTLFKFQDMYPKV 119

Query: 123 QIQLI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +  + N  +D+     D A+     +  ++++ RK++ +     A+P +++   +P 
Sbjct: 120 ELDIRNISNGFVDMYRQGLDLAMH-GGTLSDANVVARKVMVLQRIFVASPEFIEKQGKPS 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+++L  +  + F    P    D  W         EP +     +S   +    +   GI
Sbjct: 179 SLRDLTNYPFVCF--RWPSGDIDKEWDIKDHTIKVEPSV---VSDSIGFVKGGVIRHRGI 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP+ +V+    + +L+ +  D        +  YP+    +   +   +F+  + 
Sbjct: 234 ALLPELLVRHQLKDGSLINLFPDDNLQKEEAWLLYPQRKALSHSAQLLIDFLLQEL 289


>gi|167813997|ref|ZP_02445677.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
          Length = 302

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +  +L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVVFENRIEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPGFAATHGMPTE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    +IT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLE--PTLISENFLFLRQAILAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++PDY+V D+     +V  ++      F   +Y  Y     +T     F +F+  +AR+
Sbjct: 237 IVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEEARN 295


>gi|300702496|ref|YP_003744096.1| transcriptional regulators, lysr family [Ralstonia solanacearum
           CFBP2957]
 gi|299070157|emb|CBJ41448.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           CFBP2957]
          Length = 298

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 118/286 (41%), Gaps = 6/286 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q +  R +  LE  +G  LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                   G +RI  +  +   +L   L +    YP + +
Sbjct: 68  VLQPYAESLESTSAALLRAASSQGQGVRGTVRITASEVVTGEVLPAILADLHAAYPGLTL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N+  D+    AD A+R+++P Q   LI R +  I +  +A   YL+    P ++ 
Sbjct: 128 ELVPSNRLEDLLRRDADIAVRMQRPSQ-GVLIARHIGGIELGVHAHRRYLERRGTPATLD 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI +          F        P        L+ +S L+ +     G GI + 
Sbjct: 187 DLAGHALIGYDRETA-----FIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGIC 241

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + + +P+LVR+  D + P    +    E L+++   +   + +
Sbjct: 242 QVGLARRDPDLVRLFADEVAPVLDTWLAMHEDLRDSPCCRVVFDAL 287


>gi|289626817|ref|ZP_06459771.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289646518|ref|ZP_06477861.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330869030|gb|EGH03739.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 294

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 120/290 (41%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  G 
Sbjct: 4   IEDLRLAVALSRCESLSAAARVLNVSPPALSMRLRKLETQLGITLANRDARRLSLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  + ++ +  +LE      ++   +  G LR+A     G+  +   L  F  L+P + +
Sbjct: 64  RFAQESAHLLEQLEALPESFKQHDERLVGTLRLAAPFGYGRQRIAPLLARFAKLHPQLCL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L           +D  I +   +  S  I R L   H    A+P YL+    P +  
Sbjct: 124 HLDLRETPW-PDRHDSDAVIHIGS-LNDSLWIARPLAHNHRWLCASPAYLEQHGAPSTPD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  I   +          W  +  +     RI   L  N      ++   G GI L
Sbjct: 182 ELACHRCICIRENDEDVTL---WHLSKGQAKKTLRIEPALLSNDGSVARRWAEQGLGIVL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D   +  LVR++ D    S  +    P     + +++A   F+
Sbjct: 239 RSQWDVSDAIASGRLVRVLADWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|330831037|ref|YP_004393989.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328806173|gb|AEB51372.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 300

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 129/287 (44%), Gaps = 7/287 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  FY V   GSF+ AA+ L +S+  +SR +S LE+ +  +L  R  R L+LTE 
Sbjct: 2   MDIAHLASFYEVVLRGSFSTAADTLGVSKGMLSRHVSALESSLNAQLLQRSTRRLSLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   E++      + ++Q  + +  G+LR    +  G  ++   L  F  L P +
Sbjct: 62  GKTLYQQAGEIFALARQAEQDIQALTEEDGGRLRFTCPVSTGDRMVSELLASFAALCPGV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L   N+ +D+S    D A+R    +   +L+   L  +     A+P  +     P +
Sbjct: 122 EVELNFTNQMVDMSQGENDIALRAMNEVPD-NLVALPLGRLKDVVVASPALVAREGRPAT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL   + +  G       E ++++   +      +   ++ N Y +++Q    G G A
Sbjct: 181 PYELSGRSCLLQGHN--PAWEQWHFIRGGEEAHILVQ-GKVRANHYSTVLQLVRAGMGYA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             P  +V+       LV ++++  +    ++  + +  +   K++ F
Sbjct: 238 KCPLMLVESQLTAGELVTVLDEWQSGLHQLHVLHAQQRRVPRKIRLF 284


>gi|297180159|gb|ADI16381.1| transcriptional regulator [uncultured bacterium HF130_12L15]
          Length = 292

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 135/295 (45%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ L+ F  VA +GS + AA ++ +SQ S+ R ++ LE ++GIKLF R   G  L+E 
Sbjct: 1   MDWNLLKSFVAVAETGSLSAAARKIEVSQPSVGRHVAELERQLGIKLFRRGRAGYELSED 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  + E        ++   +G +RIA +  +   +L      F  + P I
Sbjct: 61  GIALLGRARAMREQAEAISRLALGATEAVAGTVRIAASEVVSAYVLPSMTAAFAKMEPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+++  N+  ++    AD AIR+ +P Q   L+ RK+  I + A AA  YL     P S
Sbjct: 121 EIEIVASNQVENLLRRDADIAIRMVEPAQ-LDLVARKITDIPLAACAATSYLDRRGRPAS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             E+  H+L+ +     + ME  +        I        + ++ +   +    G+GI 
Sbjct: 180 PAEIVGHDLVGYD----RGMELIDGFREFGVEIDRHGF-RFRTDNQIVFWEAIRTGNGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                +V   P +  I+  +  PS  ++      ++ + +++   +F+  + + +
Sbjct: 235 FAQVPLVDREPLVEVILPGLPLPSLPMWLAMHRDVRTSARIRRVADFLHEQLKAY 289


>gi|187924711|ref|YP_001896353.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715905|gb|ACD17129.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 302

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 132/297 (44%), Gaps = 9/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA +L +S++++S  ++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDVNSLTLLVDILDAGNLSEAARRLKMSRANVSYHLNQLERSIGLQLVRRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + + L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLQLYEHGRTIQNALLAARESVTTLGQSLQGRVRLSVPSGYGQLIMSDWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVMFENRVEDLMRDEVDIAVRVMSE-PPQNLVARDMGPVRYVACASPDFADRHGMPRQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    LIT   +  +              + EP I      ++L + Q  + G G+ 
Sbjct: 180 LDDLRTAPLITAAVVGRQLRVAAYLRDERHEVLLEPSI---ISENFLFLRQAVLAGLGVG 236

Query: 243 LLPDYIVKDNPNLVRI---MEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+PDY+V+D+     +   +++     F   +Y  Y     +T     F +FI  +A
Sbjct: 237 LVPDYVVQDDLRRGDVLTTLDEWRLSIFGTHMYMLYMPNRHHTRAASTFIDFILQQA 293


>gi|90420087|ref|ZP_01227995.1| putative transcriptional regulator, LysR family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335421|gb|EAS49171.1| putative transcriptional regulator, LysR family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 308

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/311 (23%), Positives = 129/311 (41%), Gaps = 36/311 (11%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + V   VA  GS + AA +L +  +++SR ++ LE  +  +LF R +R L LT+
Sbjct: 1   MDRLKSMSVVIAVADEGSLSAAASKLAMPVATVSRGLAELEAALNTQLFTRSSRHLKLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   +E  + ++      PSG L + +   LG   L      F+  +  
Sbjct: 61  AGRSYVEACKRILEDVEGAERDVSGEYRTPSGDLAVTSPWGLGHMHLLPIACAFMAEHTA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+L ++ +    D+ D AIR+  P+  SS+I  +L ++ +   A+P Y+ +   P 
Sbjct: 121 INLRLMLTDRIMRPMEDHIDAAIRIG-PLADSSMIATRLGSVRIVLCASPEYVADRGRPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---------- 231
             ++L  H+ IT  D        F    T+   + EP  S L VN+  +           
Sbjct: 180 DPKDLIAHDCITIDDFGAPGSWKFLRQETI---VAEPIRSRLTVNTSEAAVAAAIAGAGI 236

Query: 232 -------MQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
                  M+                +   +LV ++E+   P   V+  Y        KL+
Sbjct: 237 AQVMGYKMEAA--------------RQAGSLVILLEEFEQPPLPVHVVYSGRKPMPLKLR 282

Query: 285 AFRNFIFLKAR 295
           AF ++   + R
Sbjct: 283 AFLDWATPRLR 293


>gi|90411436|ref|ZP_01219447.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
 gi|90327649|gb|EAS43992.1| transcriptional regulator, LysR family protein [Photobacterium
           profundum 3TCK]
          Length = 300

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 13/289 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +F  V + G+F+ A+  +++  +++SR++S LET++  +L  R  R L LT  
Sbjct: 1   MDLNSLNIFIHVVQQGTFSGASIAMNIPVATVSRRVSELETQLDQQLLVRSTRKLALTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++  S    ++   +  + E   +  GKLR++    L   +L     +F   YP I
Sbjct: 61  GKVLYQRASVGLDEIFAAKQAMNEEQEEYKGKLRVSIPPAL--YVLDEMFHQFNKSYPLI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++++   K ID   D  D  IR+ + +   S + R+L         +  +L     P  
Sbjct: 119 QLEVLTTPKRIDFIDDEVDVVIRVGQ-LNHQSAVARRLGCYRHVVVCSQTFLNQFGIPQE 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L    +  +         + NWL    +    P       N Y+ I+     G  + 
Sbjct: 178 PVALVDLPIAAWMS----NDNNVNWLLGDQKIKIHP---TFSSNDYVHILSAIRSGCMLG 230

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP  +      +  LV ++     P   +   YP     +   KAF +
Sbjct: 231 ELPPMLANPLLKSGELVEVLTHYPLPEVELNLLYPSRKHLSRLTKAFID 279


>gi|327191458|gb|EGE58480.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 308

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 127/299 (42%), Gaps = 21/299 (7%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  V  +GSF+ AA  L ++Q ++SRQ++ LE     +L +R   GL+LT 
Sbjct: 1   MDIVSALRTFQRVVETGSFSAAAHDLDVTQPAVSRQVAALEGHFNTRLLHRTTSGLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G ++  +   +   +E             SGK+R++    LG + L   L +FL  +P 
Sbjct: 61  EGERMLPMALRILEAVEELGDAAGSEGAMASGKVRLSVPAPLGLH-LSERLGDFLAAHPK 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+   +  D+  +  D  +RL  P+  SSL+ R++        A+P YL     P 
Sbjct: 120 LSVELLFREESSDMIEERLDLEVRLG-PVADSSLVCRRIGWTTAFLVASPAYLARKAAPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQ------- 233
           + +++  H  + +     +  E  +W  +        RIS  L   + ++I +       
Sbjct: 179 TPRDIKDHECLWYT----RAGEANSWSFSNGSEDISVRISPRLTACNAVAIHRAALAGAG 234

Query: 234 -YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +    I   PD        LV +M+D       V   YP       ++K   +F+ 
Sbjct: 235 LAVLSH--IIATPDIAA---GRLVPVMKDFQPSRLPVTVVYPSRRNMPLRVKTVLDFLI 288


>gi|190149402|ref|YP_001967927.1| glycine cleavage system transcriptional activator-like protein
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|307262719|ref|ZP_07544346.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914533|gb|ACE60785.1| glycine cleavage system transcriptional activator-like protein
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306871864|gb|EFN03581.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 296

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 14/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  +FT AA+ L ++Q+++S QI  LE  +G+ LF+R  R L LTE G+
Sbjct: 8   LNALKAFESAARHLNFTKAADDLFVTQAAVSHQIKLLEDFLGVSLFHRRNRLLELTEIGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  ++     +++  + +    L I+TT   G + L   L +F   YPDI++
Sbjct: 68  QYFEEIQPLLEQIAVATEKVKLKNSRQI--LSISTTPSFGMHWLVPRLNKFHKKYPDIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           +L   ++D  +     D AI         +L   +LV   +   A+P YL++   P++  
Sbjct: 126 RLTTASQDEGLLDKDIDVAIYYGSG-NWQNLEAIELVQARIMILASPEYLRDH--PITKP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L+  NLI     +    +       ++    E     +  N+ + + Q    G G+ +
Sbjct: 183 EDLEGKNLIH----VCSHTKWKQMAEHLNLNNLEVESGPMYSNTSMGM-QAAKHGQGVVV 237

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKAR 295
               + ++      ++E   T  +     Y  YP  +    K+K F  +I  + +
Sbjct: 238 ANRILAQNAIEEGSVIEAFTTDVYDEKAFYVVYPPQMAEVAKVKHFVEWITHEIK 292


>gi|331015535|gb|EGH95591.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 338

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 125/300 (41%), Gaps = 13/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR---HARGLTLTE 61
            + LR F   AR  SF+ AA +L+++ +++ +Q+  LE+ +GI LF R       L LT+
Sbjct: 35  LNALRAFEAAARHQSFSAAAAELNVTPAAVGQQVRNLESWLGIALFARASSGTARLMLTD 94

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
                     E + +L      L++SSV     L +  +       L   +++F   YPD
Sbjct: 95  VARTALPDIREGFDRLSIGLTRLKDSSVHAG--LTVTVSPAFASKWLLPRIEQFQQDYPD 152

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L  + + +D  ++  D  +R     +   L    L+   M    AP Y +  +  L
Sbjct: 153 MNVLLDTNARSVDFQVERVDVGVRYGAG-KWPGLTAVHLMDEVMFPVCAPDYARLKKGKL 211

Query: 182 SIQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + + L+   LI        +    +                 L++N+  S++Q  + G G
Sbjct: 212 TAKALEGSTLIHDLSMANDRDYPTWRMWLDASGFNHVNASHGLRINNSASVLQAAIDGQG 271

Query: 241 IALLPDYIVKDN---PNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +AL    +VKD+     LVR   D       +   Y  Y        K+KAFRN++  +A
Sbjct: 272 LALARSVMVKDDLAAGRLVRPFADKGVDCPLTQAYYIVYRPECAELAKVKAFRNWLLFEA 331


>gi|167621788|ref|YP_001676573.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351529|gb|ABZ74259.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 300

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 109/272 (40%), Gaps = 7/272 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++  F  V   G F+ AA+   ++ S++S+ +  LE  +G +L  R  R L LT +G 
Sbjct: 6   FGEMETFAKVVELGGFSAAAKARRMTPSAVSKLMGRLEARLGARLLNRSTRMLQLTPEGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V   L+           + SG LR++ +   G ++L   +  FL  +P + I
Sbjct: 66  AFYEACVRVLADLQEA-ERAAARGAQASGLLRVSVSAGFGLHVLAPLIAAFLARHPGVSI 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   +  ID+  +  D  IR   P+++SSL+ RKL        AAP YL     P +  
Sbjct: 125 EISYSDAVIDLLAENTDVGIRTG-PLKTSSLMARKLGESPWRIVAAPDYLARHGAPPTPD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    LI                      I  P     Q +    +    + G G+A L
Sbjct: 184 DLSGRTLIGLNYARAMRGWPLREPGRQTSRIFTPSPRA-QGSDGEIVRHLALNGVGLARL 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSF-TVYFC 272
           P Y V  +     LV ++E        T Y  
Sbjct: 243 PLYAVARDLAEGRLVTVLETYNPGDVDTFYAV 274


>gi|33597807|ref|NP_885450.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33574236|emb|CAE38568.1| probable LysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 306

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 122/289 (42%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR-GLTLTE 61
            DWD LR F  VAR+   + AA +L +  ++++R++  LE E+   LF +    G  LTE
Sbjct: 2   LDWDSLRYFLEVARTQRVSAAARKLGVEHTTVARRVRALEAELDSLLFEKSRSAGYVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   + T +  L       SG +RI  T   G  +L     +F   YP 
Sbjct: 62  DGQRLFVFAEQMESTVHTARENLSGIGQALSGHVRIGATEGFGSYVLTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    +  KL    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYVCTKLCDYTLMLYGTPAYLARHAPIR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  HN I + D +      F+        +       L+  S ++     + G  +
Sbjct: 181 ERADLAGHNFIGYVDEL-----LFSERLRYLEDVLPNSQVVLRSTSVIAQYHAALQGQSL 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP +I   +P L  ++ D I    + +    E L+   ++ A   F+
Sbjct: 236 AILPCFIAAQDPRLTPVLPDDIAIMRSFWMYCHEDLRRLKRVSALWEFM 284


>gi|227820918|ref|YP_002824888.1| putative LysR family transcription regulator protein [Sinorhizobium
           fredii NGR234]
 gi|227339917|gb|ACP24135.1| putative LysR family transcription regulator protein [Sinorhizobium
           fredii NGR234]
          Length = 293

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 128/290 (44%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +RVF  VAR+G    A+++L ++ +++SR+++ LE  +  +L  R   G  LT +
Sbjct: 1   MDWDDVRVFLAVARTGQILAASKRLGINHATLSRRVTALEETLKTRLLVRRPNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q ++       +G +RI      G + L   L      +P++
Sbjct: 61  GEIFLSAAERMETEMLAAQSQIGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLTARHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL+   +   +S   AD AI + +P +   L+  KL    +  YA+  YL     P +
Sbjct: 121 KLQLVPVPRSFSLSQREADIAITIERP-EQGRLVSSKLTDYTLGLYASADYLARYGTPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I +L  H  I + + +      F         I     +  +++S     +     +G+ 
Sbjct: 180 IDDLKNHRRIGYVEDL-----IFTPSLNFSAEIMRSWDASFEISSATGQTEAVRSSAGVG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +L +YI +  P L R++ D  T     +  Y E+ +   +++   +F+  
Sbjct: 235 ILHNYIARHYPELTRLLPD-TTIRRAYWTTYHESARELVRVRTVVSFLQE 283


>gi|206563006|ref|YP_002233769.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039046|emb|CAR55009.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 319

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 135/294 (45%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +   G  TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVANTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +    +  KL    +  YA   YL N    
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERP-ERGPYVVTKLCDYQLRLYATRDYLANHAPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +    E    L  +DR +     + L+  S ++ +   + G G
Sbjct: 190 TCTDDLAQHAFISYVDDLAFSNE----LLYLDRAVPGA-TAGLRTTSVIAQVFAALQGGG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+LP ++    P LV ++ + +  +   +    E L+   ++ A  +++   A
Sbjct: 245 LAILPCFMAATQPALVPVLPNDVVVTRCFWLTCREDLRKLRRVTALWDYLRAAA 298


>gi|325291645|ref|YP_004277509.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325059498|gb|ADY63189.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 293

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    A+++L L+ +++SR+++ LE  +  +LF R   G  LTE+
Sbjct: 1   MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTSLEQALKTQLFIRRTNGCELTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L       +G +RI     LG + L   L      YPD+
Sbjct: 61  GQLFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI + +P +   L+  KL    +  YA+  YL     P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITIERP-EQGRLMFSKLTDYSLGLYASKSYLSEYGTPAD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +H  I + + +      F+        I     +  +++S     +    G+GI 
Sbjct: 180 VETLKRHRRIGYVEDL-----IFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +L +YI    P L+RIM   ++ S + +  Y E+ +   +++   +F+  
Sbjct: 235 ILHNYIAGQYPELLRIMP-HMSISRSYWTAYHESARQLVRVRTVVDFLQE 283


>gi|289624004|ref|ZP_06456958.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289650522|ref|ZP_06481865.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330868177|gb|EGH02886.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 265

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 8/263 (3%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
            ++R ++ +E+  G +L  R  R L LT  G        ++    +   +       +P 
Sbjct: 1   MVTRYLAQMESWAGARLLNRTTRKLGLTAPGQLTLLRCQQLVELADAVPLAADTQVDEPR 60

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G LRIA +  L Q +L   +  +L  YPD    L++ N+ +D+  +  D AIR+   +  
Sbjct: 61  GMLRIACSQSLAQAVLAPAVTAYLQRYPDTSADLLIGNEAVDLVSERIDLAIRITNQL-D 119

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
            ++I R L        A+P YL     P   QEL  HN +T+        E         
Sbjct: 120 PNVIARPLGQCASVVCASPAYLAVHGTPSRPQELSAHNCLTYSYFGKSLWE----FTRQQ 175

Query: 213 RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTV 269
            P+  P    L  N  + +++  V G+G++L P +       +  L+ +M +    +  +
Sbjct: 176 MPLSVPVGGNLSANDSVVLLEAAVAGAGVSLQPVHSAAPLMASGKLIALMPEYQPRALGI 235

Query: 270 YFCYPEALKNTGKLKAFRNFIFL 292
           +  Y      +  L+ F +F+  
Sbjct: 236 HAIYTSRHHQSATLRTFLDFLTE 258


>gi|126734910|ref|ZP_01750656.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           CCS2]
 gi|126715465|gb|EBA12330.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           CCS2]
          Length = 298

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 124/291 (42%), Gaps = 6/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DW  ++ F  VA +GS + AA  L  SQ ++ RQI  +E ++G +LF+R  RG  LT+
Sbjct: 7   SLDWSLVQAFLAVAETGSLSAAARNLGTSQPTLGRQIKAIEAQLGAELFHRRPRGFALTQ 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L R    +   +    +       +  G +RI  ++      L   + +   L P 
Sbjct: 67  TGADLVRPAKTMRDAVRQIALTAAGQQARLEGTVRITASVATSAMHLPPIIAKIRKLEPQ 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L+  +   ++    AD A+R+ +P Q   LI + +  I +  +AA  YL     P 
Sbjct: 127 IAIELVPGDDTRNLLYREADIAVRMYRPTQ-LDLITQHIGEIPLGVFAARSYLAERGMPK 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I +L  H+ + +                VDR   + R      +  ++  +    G GI
Sbjct: 186 VIADLPNHDFVGYDSNTAIIEGFAATGTKVDRDFFKTR-----CDDNIAYWELVRAGCGI 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 I + +P +  I   V  P+  ++    EA++ T +++     +  
Sbjct: 241 GFAQADIGRRDPQIAEIDLGVSMPTLPIWLTAHEAMRQTPRVRRVWELLAE 291


>gi|28870310|ref|NP_792929.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213970430|ref|ZP_03398559.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301381214|ref|ZP_07229632.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058383|ref|ZP_07249924.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302132627|ref|ZP_07258617.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28853557|gb|AAO56624.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213924901|gb|EEB58467.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|331016535|gb|EGH96591.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 319

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 117/290 (40%), Gaps = 6/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G+ L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECRGFAPASRKLGIPKSKLSRRIAGLEERLGVSLIHRSTRKFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + +  +  +Q S  +P GK+ I+    +    +   +  F+  +P +
Sbjct: 62  GRDYYGHCVAMLVEADAAEEAIQRSKSEPQGKVVISCPPAMAAMGINEAIAGFMAAHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+ +   N+ +D  ++  D A+R+R  P++   L+ + L        A P          
Sbjct: 122 QVHIESTNRRVDPLIENIDIALRVRFPPLEDDGLVVKTLGHSAQRLVAHPDLAALLPANA 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L +   +      P+              +       L  +   +I+Q  + G G+
Sbjct: 182 SFEALARLPSLDVTSSTPEHRWLLE--NGPGHYVEVRHAPRLVSSDLDAILQAALQGVGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           A LP+ +V++      +V + +        ++  +         ++   +
Sbjct: 240 AQLPEILVREALQQGRMVELFDAHRPKCGILHAVFVSRRGLLPAVRGLLD 289


>gi|269959929|ref|ZP_06174306.1| Transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
 gi|269835228|gb|EEZ89310.1| Transcriptional regulator, LysR family [Vibrio harveyi 1DA3]
          Length = 295

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 139/301 (46%), Gaps = 17/301 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +L+ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVNSYIRVVEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYERAKVQLDSWQSVLDETRSVNESPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLILD--NKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I++QLI     +  ++S+   D  I R  + + S S     L       YAAP YL+   
Sbjct: 121 IKLQLITTLPGQIPELSL---DLFISRELEQLNSLSFKASPLFEHKAQFYAAPSYLEKHG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P SI+EL +HN++ +G+   + ++        +R             +  ++      G
Sbjct: 178 TPQSIEELSQHNVLIWGEKPVREIK-------TNRGKRVSLSGNFATTNPEALFHGAKRG 230

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI L  + ++K++     LV I+ D+     TVY  YP+      + + F +++  +  
Sbjct: 231 MGILLSNNVMIKEDLRSGALVPILPDITADEATVYAYYPKLDYQHTRTQLFLDYLKSRLE 290

Query: 296 D 296
           +
Sbjct: 291 E 291


>gi|167588185|ref|ZP_02380573.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 307

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 125/290 (43%), Gaps = 7/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+F  V   G+ + AA+ L L Q ++S ++  LE  +G++L  R  R ++ T
Sbjct: 1   MDL-LAAMRIFVRVVERGNLSRAAKDLGLGQPTVSDRVERLERFLGVRLLLRSTRAVSCT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++ +  V    +  Q  +   +    G++RIA    LG+ +L   L       P
Sbjct: 60  DEGILFYQRSKIVLDAADEAQAVVTLGNKIVRGRIRIAAPHGLGEVVLPEILTVIREHNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L+L+++  D   +  D ++RL + I   + + R+L  +     A+P Y++    P
Sbjct: 120 QLYIDLVLNDEITDPVTEGVDISLRLGQ-IGDGNFVARRLGYVRRVLVASPSYIEKHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               ++  H  I    L           +   RP   P    +  + +  + +  + G+G
Sbjct: 179 EEPTDIVGHPFIRVTGLFNDGQLRLMSPSKSVRPT--PINIVISTSHWRPVYELLLNGAG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           I +L +++  D   +  LVR++ D   P F ++   P       K +   
Sbjct: 237 IGVLQEHVCVDALASGRLVRLLPDYTVPGFDLHALLPVTRPVPSKTQVVV 286


>gi|229529538|ref|ZP_04418928.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
 gi|229333312|gb|EEN98798.1| transcriptional regulator LysR family [Vibrio cholerae 12129(1)]
          Length = 316

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 136/298 (45%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++   D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R+++ L LT
Sbjct: 10  LNMKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L    +E++ ++E  Q E++++     G++ I+  +   ++ L     EF  L+P
Sbjct: 70  KEGEQLFHSYAELFAQIERKQEEVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--- 177
           ++ +++ + +     S    D A+R   P   S  + RKL        A+          
Sbjct: 130 NVTLRMQVGSGLDYFSQRDLDIALRFG-PQPESDWVARKLARNPSVLCASAELAAKLSTV 188

Query: 178 -REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                  ++L +H L++    +P          +V + +     + L  +   +I+Q  +
Sbjct: 189 TPTLAHPEQLKEHPLLSLNHKLPWIFHHH----SVAQKVQFIPTARLCSDELDTIVQATL 244

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G GIA LP  +++    +  L+ ++ +       VY  +P+      + +A  ++I 
Sbjct: 245 QGMGIARLPRGLMEPLLRSGQLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDYIM 302


>gi|170728635|ref|YP_001762661.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813982|gb|ACA88566.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 314

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 136/292 (46%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + + +F+ +  +GS   AA+ L+L +S++SR++  LE ++ IKLF+R +R +TLT  
Sbjct: 1   MKTEDIALFHRIVETGSLVEAADLLNLPKSTVSRRLQILEDDLNIKLFHRQSRSMTLTAS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +  T  +   LE T +EL ++  +  G LRI          +   + +F+   P++
Sbjct: 61  GSHFYDKTLSILGDLEQTLVELTDTEAEIDGHLRILIFPVPELLDIANGIFDFMDHNPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++LI+  +  D+  +  D A  +      + ++ R+++T  +H  A+P YL     P+ 
Sbjct: 121 TVELIVSTEPQDMIRNNIDLAFMVEDSFNENEMVAREMITEELHFVASPDYLAKAGTPVL 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L KHN I F     +   +  +       +       L +NS    ++  + G GIA
Sbjct: 181 PEDLAKHNSILFRYPNGRIFNEVPF----GNDMKIAVKGNLCLNSIQLCLEASLTGRGIA 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LP  + +D+     L  + EDV       Y  YP     +   + F + + 
Sbjct: 237 FLPIELTRDHVERGELTMLFEDVEPYVGKCYLVYPSRRFISLASQRFIDHMM 288


>gi|332529780|ref|ZP_08405734.1| transcriptional regulator lysr family protein [Hylemonella gracilis
           ATCC 19624]
 gi|332040801|gb|EGI77173.1| transcriptional regulator lysr family protein [Hylemonella gracilis
           ATCC 19624]
          Length = 320

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 125/304 (41%), Gaps = 14/304 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    +  F   A  GS   AA +L +S  + S+ ++ LET +  +LF+R  R ++L
Sbjct: 1   MAINELRSVTTFIKAAELGSLRKAALELGISPQAASKALAQLETHLDARLFHRTTRVMSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G +L          ++      + +  + +G LRI       Q ++   ++EF  L+
Sbjct: 61  TDAGHRLLEDVQPSVLGMQRALQAARSAKDEFAGPLRITGPRTTFQPIVWRLVEEFCDLH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P IQ  ++LD++  +   D  D   RL  P     +I R+L  + M    AP Y +    
Sbjct: 121 PGIQPDVLLDDRIGNWVEDRVDVGFRLG-PSPHEGVIARRLFPVQMPICGAPSYFQRHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLG 238
           P S+ +L  H    +    P   +   W   + D+   +P +  +  N  L  +Q  + G
Sbjct: 180 PDSLADLASHRCSAYRH--PSTGKVLPWRVKLGDQAADQPVVPAICSNDELFELQAVLAG 237

Query: 239 ------SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                 +G+   P      +  LV I+ D +      +  +        + +AF +    
Sbjct: 238 KVLGQLAGVTAAPYI---RSGQLVPILVDHMPNYANYFVYFGNRSSQPARTRAFIDLAVQ 294

Query: 293 KARD 296
           +  D
Sbjct: 295 RLHD 298


>gi|330967633|gb|EGH67893.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 294

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 120/287 (41%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L LT  G     
Sbjct: 8   RVFIAINERGSLIAAAETLDMSRAMVTRYLAQMEGWAGARLLHRTTRKLGLTAPGQATLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G +RIA +  L Q +L   +  +L  YP   + L +
Sbjct: 68  RCQQLLALADAVPLAADTQVDEPRGMVRIACSQSLAQAVLAPAVTAYLQRYPGTSVDLQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   +LI R L        A+P YL     P   QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQL-DPNLIARPLGHCDSQVCASPAYLAAHGTPSRPQELSA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E           +  P    L  N  + +++    G+GIAL P + 
Sbjct: 187 HNCLTYSYFGKSLWE----FTHQHTQLSVPVGGNLSANDSVVLLEAAAAGAGIALQPVHS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V     +  L+ +M D    +  ++  Y      +  L+   +F+  
Sbjct: 243 VAPLIASGKLIALMPDYQPRALGIHAIYTSRHHQSATLRILLDFLAE 289


>gi|17988735|ref|NP_541368.1| LysR family transcriptional regulator [Brucella melitensis bv. 1
           str. 16M]
 gi|256043773|ref|ZP_05446695.1| hypothetical protein Bmelb1R_04729 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17984548|gb|AAL53632.1| transcriptional regulatory protein, lysr family [Brucella
           melitensis bv. 1 str. 16M]
          Length = 310

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 126/294 (42%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DIATLQAFECAARHGSFTQAAHELNLTQSAVSRQIKDLESQLGVLLFERIRQRILLSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E T +    S+   S     AT    G   L   + +F+  +P I 
Sbjct: 70  RKFLPEVRRLLNQTEDTMLRAMASAQSTSSSSI-ATLPTFGTRWLMPRILDFVEKHPGIA 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   +   D      D AI   +P+ + +     L +  +   A+P  LK  R P S 
Sbjct: 129 LNVASRSGVFDFEEQPFDLAIHYGQPVWAHA-TCTFLCSEVIVPVASPSLLKTRR-PASP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL+   L+    L  +      W  +     G+      +   +  ++   + G G AL
Sbjct: 187 EELENEPLLH---LATRPKMWAQWFESCGVE-GQSAYRGHRFEQFSMVIGAALAGLGFAL 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++    +  LV + E  +      Y   PE        + F  +I  + 
Sbjct: 243 LPLYLIEQELRSGELVLLFEKPMRTENEYYLVVPEGKLENPLTQVFCQWIAGQV 296


>gi|322835341|ref|YP_004215367.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170542|gb|ADW76240.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 304

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 132/298 (44%), Gaps = 4/298 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +  +L +F  V  +GSFT  A  L L+++ +S  +  LE+E G+ L  R  R L LTE 
Sbjct: 2   LNLQRLEIFVAVVNAGSFTGGAVSLGLTKAVVSFNVKQLESETGVALLTRSTRRLALTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G + ++   ++  + E    +++      SG+LRI +T + G  ++   L  F  L+P +
Sbjct: 62  GERFYQRCQDLLQEAEAVLDDVRRDHAGLSGQLRITSTPEYGARVVVPALAAFSALHPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQ +  +   D+     D AIRL + +  SS     L    +   A+P +L+      +
Sbjct: 122 RIQHVASSHHDDLIAGRFDLAIRLGQ-LTDSSHHAAALGRFGILPVASPAFLREHGNITT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     I    L                P        +  +S  +++ + + G+G+ 
Sbjct: 181 PDQLAASRWIAHSRLPLPMSWPVTDAQGKQNPFRVTTPPAIVADSASALLAFALAGAGVV 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           LLPD++V+   D   L  ++     P   ++  YP       K+++F +F+  +  ++
Sbjct: 241 LLPDWLVQPEIDAQRLCHVLPGHRFPPQGIFALYPNTRHVPEKVRSFIDFLQSRLAEF 298


>gi|83717276|ref|YP_440345.1| transcriptional regulator [Burkholderia thailandensis E264]
 gi|167617084|ref|ZP_02385715.1| transcriptional regulator [Burkholderia thailandensis Bt4]
 gi|257140979|ref|ZP_05589241.1| transcriptional regulator [Burkholderia thailandensis E264]
 gi|83651101|gb|ABC35165.1| transcriptional regulator [Burkholderia thailandensis E264]
          Length = 296

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/290 (21%), Positives = 116/290 (40%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +R+F  V ++GS + AA +L +   ++SR+I  LE ++ ++L  R ARG  LTE 
Sbjct: 1   MDLNDVRIFVGVVQTGSLSGAAARLEMPLPTVSRRIRALEKQLRVQLLERTARGTRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++L+   S     L   +  +     +  G+LR++             L  F   YPDI
Sbjct: 61  GTRLYEHASRGVEILAEGEQAVVSDQARLKGRLRLSLPPAFEAWW--ELLSAFQKRYPDI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++      + +D+  D  D A+R+   I   +++ R L+       A+P  +     P  
Sbjct: 119 RVHAYATERRVDLIEDGIDVALRVGA-IAHEAMVARALLAYRHVLVASPSLVDALGIPEV 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +     +               T +        + L  N Y+ +    + G  + 
Sbjct: 178 PDDLHRFPCAIWSSAANFSRGWRLGDRTFE------PDAALSTNDYMHLRSRAIAGEVVT 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LP ++  +      L  ++     P   V   YP     +  ++A+  F
Sbjct: 232 ELPPFLAAEPIRQGRLTALLCAYPLPEQHVNLLYPSHRHPSAIVRAYLEF 281


>gi|197122081|ref|YP_002134032.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171930|gb|ACG72903.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 335

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 132/295 (44%), Gaps = 14/295 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D LR+   V  +G  T AA +L L +S++SR+++ LE  +G++L  R+AR L LTE G
Sbjct: 7   SLDDLRLLVEVVATGGLTAAAARLGLRKSTVSRRLAALEERLGVRLLERNARRLRLTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H   + +  +      E  E+   P G LRI  T  L   LL   + E LL +P + 
Sbjct: 67  RAYHARAARLVAEARALDRETAEARGAPQGTLRI-ATPALLGELLAPAVAELLLRHPRLG 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L    +D+  +  D A+R   P+  SSL+ R+L T+    YA+P YL     P + 
Sbjct: 126 VELALAPPHVDLLAEEHDLALRTG-PLADSSLVARRLGTLRTGCYASPAYLARRGTPATP 184

Query: 184 QELDK----HNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLG 238
             L      H+ I    L+ +   D  W           R    L+V S  +       G
Sbjct: 185 DALRDEAEAHDCI----LLAEAGTDEIWFFGAGATARTVRPAGRLRVPSVHAGQLAARAG 240

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  LP  +V D+     LV ++E    P   V+  YP       K++AF   +
Sbjct: 241 LGVVRLPAALVADDVRSGRLVAVLEAETPPGMPVHAVYPSGRHLAPKVRAFLELV 295


>gi|307945395|ref|ZP_07660731.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307771268|gb|EFO30493.1| LysR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 293

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 139/289 (48%), Gaps = 9/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +RVF  VAR+G    A  +L L+ ++++R+++ LE ++ +KLF R   G  LT++
Sbjct: 1   MNWDDVRVFLSVARTGQILAAGRRLGLNHATVARRLTSLEEDLSVKLFERSTSGCVLTDK 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+       +  ++   + E+ +  V  SG +RI      G   L   L +    +PD+
Sbjct: 61  GSRFLPRAEAIEAEMLAAEAEIADDEVSISGTVRIGAPDGFGVAFLAPRLGQLTEKHPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL+   +   +S   AD AI + +P +   LI RKL    +  YA+  YL  C  P +
Sbjct: 121 TVQLVPVPRSFSLSRREADIAITVERP-EHGRLIARKLTDYSLGLYASSSYLDTCPPPET 179

Query: 183 IQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++L  H+LI    DLI     ++      D        +  ++ S L   +    G+GI
Sbjct: 180 LKDLKDHSLIGAVEDLIYSQALNYAADFAKDWS------ARFEIASALGQTEAVRAGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +L  +I + +P+LVR++ D+       +    E+ +    + A   F+
Sbjct: 234 GVLHSFIARSDPDLVRLLPDIEV-KRAYWTVSHESTRPLRPVTATLEFL 281


>gi|303249835|ref|ZP_07336039.1| DNA-binding transcriptional activator GcvA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251658|ref|ZP_07533563.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651402|gb|EFL81554.1| DNA-binding transcriptional activator GcvA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860855|gb|EFM92863.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 296

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 14/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  +FT AA+ L ++Q+++S QI  LE  +G+ LF+R  R L LTE G+
Sbjct: 8   LNALKAFESAARHLNFTKAADDLFVTQAAVSHQIKLLEDFLGVSLFHRRNRLLELTEIGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  ++     +++  + +    L I+TT   G + L   L +F   YPDI++
Sbjct: 68  QYFEEIQPLLEQIAVATEKVKLKNSRQI--LSISTTPSFGMHWLVPRLNKFHKKYPDIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           +L   ++D  +     D AI         +L   +LV   +   A+P YL++   P++  
Sbjct: 126 RLTTASQDEGLLGKDIDVAIYYGSG-NWQNLEAIELVQARIMILASPEYLRDH--PITKP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L+  NLI     +    +       ++    E     +  N+ + + Q    G G+ +
Sbjct: 183 EDLEGKNLIH----VCSHTKWKQMAEHLNLNNLEVESGPMYSNTSMGM-QAAKHGQGVVV 237

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKAR 295
               + ++      ++E   T  +     Y  YP  +    K+K F  +I  + +
Sbjct: 238 ANRILAQNAIEEGSVIEAFTTDVYDEKAFYVVYPPQMAEVAKVKHFVEWITHEIK 292


>gi|15887559|ref|NP_353240.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15155094|gb|AAK86025.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 293

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 135/290 (46%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    A+++L L+ +++SR+++ LE  +  +LF R   G  +TE+
Sbjct: 1   MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++   Q  L       +G +RI     LG + L   L      YPD+
Sbjct: 61  GQRFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI + +P +   L+  KL    +  YA+  YL +   P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITIERP-EQGRLMFSKLTDYSLGLYASADYLADHGTPDD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L +H  I + + +      F+        I     +  +++S     +    G+GI 
Sbjct: 180 VEALKRHRRIGYVEDL-----IFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +L +YI    P L+RIM   +  S + +  Y E+ +   +++   +F+  
Sbjct: 235 ILHNYIAGQYPELMRIMP-HLGISRSYWTAYHESARQLVRVRTVVDFLQE 283


>gi|332288246|ref|YP_004419098.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
 gi|330431142|gb|AEC16201.1| putative DNA-binding transcriptional regulator [Gallibacterium
           anatis UMN179]
          Length = 297

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 133/296 (44%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  + +L++F+ +A+ GS   AA +L ++  S+S+ +  LE  + + LF+R  R + LTE
Sbjct: 3   STTYHQLQIFHAIAQEGSINAAARKLGITSPSVSQALKLLEQSMDMPLFWRSTRRVQLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L   T  +  +L++   +       PSG +RI  +    + +LQ +L EF   YP 
Sbjct: 63  AGARLLTQTEPLMRELDSRLEQFLGEEHAPSGLVRITLSRFAYRLILQDHLAEFHRRYPH 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREP 180
           I + + + +  +D+     D  IR    I   +++ R+L+       Y +  YLK    P
Sbjct: 123 ICLDIAVYDGTVDLVAQGFDLGIRFGDKI-DENMVARQLLPAFQEGLYVSDGYLKQYGTP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S + L +H LI +  +    +     L      +     + +  N   +I      G G
Sbjct: 182 -SRENLHQHRLIGYRFITTGQILPL-ILEQGGESVSVEMPTPIICNDIDTIADGVRAGLG 239

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  L   I   + D  + + ++ D       VY  YP+A +   ++ A  +F+  K
Sbjct: 240 IGRLFTPIHQRLSDKNDFIPVLTDYWRNYPPVYLYYPQASQKIKRVAAVIDFLRGK 295


>gi|325168386|ref|YP_004280176.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064109|gb|ADY67798.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 309

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 123/297 (41%), Gaps = 4/297 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
                 L VF VVAR  SFT AA +L + QS++S  IS LE ++G+ L  R  R +  T+
Sbjct: 3   RMILRDLAVFEVVARCRSFTKAASELGIKQSTLSYTISQLEKKIGVPLIARTTRSVAPTD 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L  +       L      LQE     +G +R+ T     +++++  L  F   YP 
Sbjct: 63  PGRRLLEILGPAMRDLAEEMQTLQEERATVTGAVRVTTIPVAFESIIRPMLSSFCQRYPH 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I++  +    D+     D  IR    I    +      T  +    AP Y      P+
Sbjct: 123 VVIEISTNEGLDDVVAQGFDGGIRFGSLIDKDMVALSLTATTPVVIVGAPSYFDKYPVPI 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H  +++  +    +  +  LA   + +       L  +   +I +  + G G+
Sbjct: 183 NPEDLIAHRTVSYRYISSSRLLRWP-LAKGHQKMDYKVAPSLIFDDGEAIRKVVIDGLGL 241

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LL    V  +     LV++++D +         YP   + +   +AF + +   A+
Sbjct: 242 GLLLRSQVAADLEAGKLVQVLDDWVADLPGFSLFYPSRRRISPAFRAFIDHVKETAK 298


>gi|319795263|ref|YP_004156903.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597726|gb|ADU38792.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 300

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 131/296 (44%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + +++ VF  V   GSF    + + L++S+  + +  LE  +G++L  R  R L+LT++G
Sbjct: 5   NLNEILVFMAVVDEGSFIAGGQAMGLTRSAAGKAVGRLEDRLGVRLLNRTTRTLSLTDEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +   ++  +  +      P G LR+      G+ ++   L+++L  +P++Q
Sbjct: 65  RVFYERGLLILSAVDEAEASVAGPGGAPRGVLRLTVPDAFGRLVVLPLLQKYLAAWPELQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ--SSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            ++   ++  D+  D  D A+R+    +   + L+ R +        A+P YL    EP+
Sbjct: 125 AEVSFSDRLADVVEDGFDLAVRIGASGESADTGLVSRVVARYKALLCASPAYLAERGEPM 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I  L  H+ + F        + +         I     S L+++S  ++      G GI
Sbjct: 185 DIDALAGHDCLFFSS--RNQRQSWRLRGEGGDWIKAQGRSRLRLDSGEALRDAAAAGLGI 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD++V D+     L +++         ++  YP       +++ F + +  + 
Sbjct: 243 ALLPDFLVADDLAAGRLRQVLPGFDAGDVKIFALYPTRRLLEPRVRRFIDLMAEEL 298


>gi|116695357|ref|YP_840933.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529856|emb|CAJ96203.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 303

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 132/296 (44%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   +  F  V   G FT A   L L +S++S ++  LE  +G++L  R +R   LT+ 
Sbjct: 2   LDLKDVFHFVQVVDRGGFTSAGNSLGLPKSTLSHRVKELEASLGVRLINRTSRQFALTDV 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+ ++    +    +  +  +++   +PSG +R+   ++L Q  L+  L  FL  +P +
Sbjct: 62  GSEFYQYAVALLQSADVAEQAMRQRLAEPSGIIRVTVAVELAQFALRQVLPTFLSSHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            I  I  ++ +D+  +  D A+R     +Q S+L+QR +V    + +A   YL+      
Sbjct: 122 SIVEIATDRLVDVVGEGFDLALRGHTSALQDSNLVQRPIVRAPWYLFAGADYLERMPLLD 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L  H ++    ++ K    +      DR +  P     Q NS +S+ +      G+
Sbjct: 182 APEQLASHAIV---SMVRKGPLQWQLRGPDDRLVTIPVEPRFQSNSMMSLKEAACANVGV 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A LP YI +       L +++   I     +    P        +++  +F+  + 
Sbjct: 239 AALPGYICRPELQAGVLRQVLPGWIAADARISALMPYRTGLLPAVRSLVDFLAAEL 294


>gi|87118559|ref|ZP_01074458.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86166193|gb|EAQ67459.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 317

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 135/291 (46%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                L+V   VA   S T AA QL +S S+ S  +  +E  +G +LF R  R + L+ +
Sbjct: 1   MKIADLQVLIKVAELHSITAAANQLDMSSSAASVALKRIEESLGAQLFVRTTRQIRLSPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +   +  +    L+  Q+ + E     +G++++A + ++G+NL++  L + +  +P++
Sbjct: 61  GERYLPICQQALDLLQQGQMAINEELQSINGEVKMAMSSEMGRNLMRILLNDVMSKHPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++L + +  +D   D  D A+R   ++ +Q+ +L   K+  I     A+P Y+     P
Sbjct: 121 KLRLHVSDSRVDFYRDGVDVALRAMTKEAVQNLNLYGFKICNIPHFLCASPSYISEFGAP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +HN + +   + + M D       +        S   VN    + ++CV G G
Sbjct: 181 DTLEELSEHNTLLYK--LYEVMHDAWEFYQGEDKYKIKVKSDRVVNDGDIVRRWCVDGVG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           IA      V  +     L RI+ D   P   ++   P     +  ++  R+
Sbjct: 239 IAKKSAIDVSQDLLAGRLKRILTDYQIPMTEMWLVLPSRQLISPAIRLIRD 289


>gi|221065835|ref|ZP_03541940.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220710858|gb|EED66226.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 311

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 139/290 (47%), Gaps = 7/290 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  V R  SF  AA   + S + +S++I  LE E+G+KL +R  R + +TEQG +
Sbjct: 5   EDLRVFTTVVRKASFAEAAAAHNASPAFVSKRIRLLEQELGVKLLHRTTRRVAVTEQGER 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           ++     +  ++E    E+  +  +P G LR++T+   G++++   L + +  YP +Q++
Sbjct: 65  VYHWAQRILDEVEHLLQEVDVTRRQPRGLLRVSTSFGFGRHVVAPALSQLIAQYPALQLR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + ++ +D++ +  D  +R+   I +  LI R L   H    AAP Y++    P ++ E
Sbjct: 125 LEVFDRIVDVAAEGFDLDVRVGDEI-APHLIARHLADNHRVLCAAPAYVQRRGSPRTLDE 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H+ +   +           L +  +         L  N     +Q+   G GI L  
Sbjct: 184 LAAHDCLVIKERDHPFGVWK--LRSGSQERSVKVTGPLSTNHGEMAVQWARDGHGIVLRS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + V  +    +L++++ +    +  ++  YP  L+ + K++    F+  
Sbjct: 242 LWDVAADLQAGHLLQLLPEWQQQA-NIWAVYPTRLERSAKVRVCVEFLQE 290


>gi|294650811|ref|ZP_06728158.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823229|gb|EFF82085.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 309

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 124/296 (41%), Gaps = 15/296 (5%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA  L ++ S++S+QI  LE E+ + L +R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARDLGITTSAVSQQIRSLEQEMDVTLLHRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  +I + E      G LRIATT +LG   +   L  ++  +  
Sbjct: 62  AGQAFFLSCQEMLAAAERGKIRINELRDDLVGDLRIATTPELGALHVVPALSHWMSAHKG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +    D++ ID+  +  D AIR+   +    L    L  +     A+P YL       
Sbjct: 122 LAVHFEADHRYIDLISERIDIAIRMSLKVDDPQLTVVPLARVDQILVASPSYLNQSPPIT 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV----NSYLSIMQYCVL 237
             ++L  H L+         M++F          GE     +Q     N+       C  
Sbjct: 182 RPEDLIHHELLPV-----TLMQNFQHFTFRHGLSGENVNVEMQTRLGKNNVFVAKSLCQQ 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GIA +    V+    + +LV ++ D   P++T+     +  +   K+    + +
Sbjct: 237 GLGIARILYMDVQKELVSGSLVEVLPDWQLPTYTLQALTSKREQYPVKVHRCIDAL 292


>gi|242311028|ref|ZP_04810045.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|242134267|gb|EES20670.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 345

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 57  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 116

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G   + T        L   L +     P + ++++
Sbjct: 117 AAVRQSLDALRAATADIRSRRA--NGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 174

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   ++AD AI              +L   H+    +P +     +     +L 
Sbjct: 175 TS-QDIDPQREHADVAILFGAG-DWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLL 232

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 233 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 292

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 293 LVDTPIAAGQLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 339


>gi|220916849|ref|YP_002492153.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954703|gb|ACL65087.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 335

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 132/295 (44%), Gaps = 14/295 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D LR+   V  +G  T AA +L L +S++SR+++ LE  +G++L  R+AR L LTE G
Sbjct: 7   SLDDLRLLVEVVATGGLTAAAARLGLRKSTVSRRLAALEERLGVRLLERNARRLRLTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H   + +  +      E  E+   P G LRI  T  L   LL   + E LL +P + 
Sbjct: 67  RAYHARAARLVAEARALDRETAEARGAPQGTLRI-ATPALLGELLAPAVAELLLRHPRLG 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L    +D+  +  D A+R   P+  SSL+ R+L T+    YA+P YL     P + 
Sbjct: 126 VELALAPPHVDLLAEEHDLALRTG-PLADSSLVARRLGTLRTGCYASPAYLARRGTPATP 184

Query: 184 QELDK----HNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLG 238
             L      H+ I    L+ +   D  W           R    L+V S  +       G
Sbjct: 185 DALRDEAEAHDCI----LLAEAGTDEIWFFGAGATARTVRPAGRLRVPSVHAGQLAARAG 240

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+  LP  +V D+     LV ++E    P   V+  YP       K++AF   +
Sbjct: 241 LGVVRLPAALVADDVRSGRLVAVLEAETPPGMPVHAVYPSGRHLAPKVRAFLELV 295


>gi|260769246|ref|ZP_05878179.1| transcriptional regulators LysR family [Vibrio furnissii CIP
           102972]
 gi|260614584|gb|EEX39770.1| transcriptional regulators LysR family [Vibrio furnissii CIP
           102972]
          Length = 310

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 138/301 (45%), Gaps = 17/301 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    +L +F  V R GSFT AA    +  S++S+QI  LE  +G++L  R  R ++LT
Sbjct: 1   MSIS-HQLSLFVDVVRQGSFTKAALLHDMDNSALSKQIKKLEQSLGVQLLNRSTRTISLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G ++++    +   L   Q   +   + PSG ++IA     GQ  LQ  L  F+  YP
Sbjct: 60  PVGEQIYQQAQVLEDTLNNIQRIAETHQLTPSGSIKIAAPNYFGQRYLQPVLDAFIGKYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ LILD+K  DI  D  D AIR+ K +  S+LI +K+   +    A+  ++     P
Sbjct: 120 DVELTLILDDKRADIIADKFDVAIRIGK-LADSNLIAKKITNTNFVLIASNDFVAKHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYC 235
            S + L     + + +         + L     P  +  +        +VN    +++  
Sbjct: 179 QSPEALIALPAVIYAN----GDVTLDKLTISCEPSSQEMLNLTMKGNFKVNDVKLVVESI 234

Query: 236 VLGSGIALLPDYIVKDNPN---LVRIMEDVITPSF--TVYFCYPEALKNTGKLKAFRNFI 290
             G G  L+  + ++++     LV+++ D +  +    +Y  YP   + +  +  F + +
Sbjct: 235 KKGVGYGLIDMFGLEESLEEAGLVQLLPDYVISTMSTGIYAIYP-NRQRSLLVDDFVSLL 293

Query: 291 F 291
            
Sbjct: 294 L 294


>gi|217425581|ref|ZP_03457074.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217391544|gb|EEC31573.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 343

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 57  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 116

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G   + T        L   L +     P + ++++
Sbjct: 117 AAVRQSLDALRAATADIRSRRA--NGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 174

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   ++AD AI              +L   H+    +P +     +     +L 
Sbjct: 175 TS-QDIDPQREHADVAILFGAG-DWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLL 232

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 233 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 292

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 293 LVDTPIAAGQLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 339


>gi|149915438|ref|ZP_01903965.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810727|gb|EDM70568.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           AzwK-3b]
          Length = 293

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 124/294 (42%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AAE L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAFNVARIGTVSGAAEVLGVHHATVIRHIDALEQRLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       ++      SG+L + +   L  +LL   L EF   +PDI 
Sbjct: 63  EDLLRVAQATDDQFSQLVGRIKGRGNDVSGELVVTSLGGL-SHLLVPVLTEFQAEFPDII 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +  ++   +    A  AIR          + +      +  +A+  Y      P S 
Sbjct: 122 VRYLTGDRLFRLEYGEAHVAIRAGAVPDQPDNVVQPFFEQKITLFASDAYAARHGLPQSE 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            E+  H  +   D   +    F W+    R          +     +  +    G+GI  
Sbjct: 182 AEMSGHRFVGADDPNSRA-PFFRWM----RETIPAANIVFRSGDVHAQRRAIKQGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +     ++   L+ ++      +  ++      L  T K+++F +F+  +ARDW
Sbjct: 237 VSRLQAREMGGLIEVVPPREDWAAPLWLVTHMDLHRTTKVQSFLSFLKNRARDW 290


>gi|150395549|ref|YP_001326016.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027064|gb|ABR59181.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 293

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +RVF  VAR+G    A+++L ++ +++SR+++ LE  +  +L  R   G  LT +
Sbjct: 1   MNWDDVRVFLAVARTGQILAASKRLGVNHATLSRRVTALEATLKTRLLVRRPSGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q ++       +G +RI      G + L   L   +  YP++
Sbjct: 61  GEVFFAAAERMETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLMARYPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL+   +   +S   AD AI + +P +   L+  KL    +  YA+  YL     P +
Sbjct: 121 KLQLVPVPRSFSLSQREADIAITIERP-EQGRLVSSKLTDYTLGLYASADYLAGHGTPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L KH  I + + +       N+ A V R       +  +++S     +     +GI 
Sbjct: 180 VDDLKKHRRIGYVEDL-IFTPSLNFSAEVMRSWD----ASFEISSATGQTEAVRSSAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +L +YI +  P L+R++ +        +  Y E+ ++  +++   +F+  
Sbjct: 235 ILHNYIARQYPELIRLLPE-TAIRRAYWTTYHESARDLVRVRTAVSFLQE 283


>gi|77458181|ref|YP_347686.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382184|gb|ABA73697.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 291

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 134/292 (45%), Gaps = 8/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  V R  +   AA  L + Q+++ R+I+ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDARVFLAVCRESTLRGAARVLGVDQATVGRRITALEKSLGATLFLRTSEGYALTAV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +   ++ H     +  +Q    + +G +R++TT  L  + L   + +    +PD+
Sbjct: 61  GEAALKSVEKMEHSALELERRIQGLDDRLTGSVRVSTTDSLAIDFLIPAMAQLHEQHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL    + + ++   AD A+R  +P  +  LI R++    +  +A+  Y+ +   P  
Sbjct: 121 RVQLDASTQILSLAKREADIAVRNTRP-DNPDLIARRIARWPVGLFASQAYVDSHGVPAP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               + H+L+ +   +    +    L  V  P+   RI    ++S L + +    G G+ 
Sbjct: 180 GSSFEGHDLVVYEPYLQGNKD----LTLVSEPMTRGRIVA-GLSSSLLVRRSIAAGLGVG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P Y+ + +  LVR+  +   P  + V+      L++T +++A    I   
Sbjct: 235 EIPVYMGERDG-LVRLWPERTRPLPYEVWLVTHADLRHTARVRAVIEHIVEA 285


>gi|238791588|ref|ZP_04635226.1| LysR-family transcriptional regulator [Yersinia intermedia ATCC
           29909]
 gi|238729204|gb|EEQ20720.1| LysR-family transcriptional regulator [Yersinia intermedia ATCC
           29909]
          Length = 305

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 130/293 (44%), Gaps = 6/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V    SF  A++ L +  S++SR IS LE  + ++L  R+ R + LT+
Sbjct: 4   ALDFNTLKVFIAVVERDSFVGASKILEMPTSNVSRCISQLEDRLNLQLIERNTRHMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   +PD
Sbjct: 64  AGHLLYTRAKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVVADFACQHPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  + +    +   D  D AI + R  +  S  I R LVTI     AAP  ++    P
Sbjct: 124 LEISCVTNLSGFESLRDDLDLAIIVSRGQLDDSDYIARHLVTIPCTIVAAPSIIQRYGIP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             IQ+ ++   IT  + +      + ++   +           +VNS     +  V G G
Sbjct: 184 SRIQQFEELPCITTVNALKGA--PWQFMNKKEGFETIKVKGHYRVNSGEMAGRAAVAGVG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            A+L     +   D+  L+ I  +       ++  Y +      K +A  ++I
Sbjct: 242 FAILSKQACQPYIDDGRLIEIKFEQPPAPLQLFALYSDRRYLPAKTRALIDYI 294


>gi|14626716|gb|AAK71639.1|AF388671_2 LysR-type transcriptional regulator BdhR [Aeromonas hydrophila]
          Length = 320

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 128/302 (42%), Gaps = 7/302 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   +  F   A  G+ + AAE   +S  + S+ +  LE  +G++LF+R  R ++LT
Sbjct: 1   MINELRSITTFVHTAELGNLSKAAEAQQISPQAASKALGQLEVYLGVRLFHRTTRSMSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +    T      L+     ++++  + +G LRI     + Q L+   L E+  LYP
Sbjct: 61  EEGQRFLEATQPSLLGLQQALQTVRQAREENAGPLRIVGPRTVLQPLIGPVLDEYCRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q ++ LD++  +   D  D   RL    +   LI R+L  + +   A+P YL+    P
Sbjct: 121 AVQPEIQLDDRVGNWVADRVDVGFRLGNAPE-EGLIARRLFPLQLIICASPVYLRKHGVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
             +Q+L  H    F       +    W   V   + E  ++     N     ++  + G+
Sbjct: 180 RGLQDLGAHRCSAFRRSNDGRIAP--WRVQVGEEVQERLVTPAFSTNDEEVELRAALSGT 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +          +     L+ ++ D +   +++Y  Y        +++ F + +  +  +
Sbjct: 238 IMGQFAGSTAAPHIRAGRLIPLLLDHVCSDYSLYLYYGSRAAQPARVRRFIDLVIARLTE 297

Query: 297 WK 298
            +
Sbjct: 298 GQ 299


>gi|104779325|ref|YP_605823.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95108312|emb|CAK13006.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 295

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 138/290 (47%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEKHLGTALFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ ++   P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQAIT-PLGKIRLGVTEGIGIMFFTPRMNALFQRYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  LI RKL    +  YA+  YL       S
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQDYLDRAPPLQS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ I + D +    E    L  ++     P +   +  S ++       G GIA
Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRTPNV-VFRSTSVIAQQHAAQAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LP+Y+ + +P LVR++    T   + + C    L  + +L+   +++  
Sbjct: 235 VLPNYMARHDPKLVRVLP-SETIQRSYWICTRRELHKSVRLRVVWDYLLA 283


>gi|221196789|ref|ZP_03569836.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221203458|ref|ZP_03576477.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221177392|gb|EEE09820.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183343|gb|EEE15743.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 337

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 128/294 (43%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLT 60
             +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +    G TLT
Sbjct: 28  KLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEASLGTLLFDKSRAEGFTLT 87

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P
Sbjct: 88  AEGQRLVAYADAMETTVQSACDQVAHTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 147

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     + ++   AD A+ L +P +    +  KL    +  YA   YL      
Sbjct: 148 RVTVDLLPVPHFVSLTKREADLAVTLERP-ERGPYVSTKLCDYQLRLYATRDYLATHPPI 206

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +    E       V         + L+  S ++     + G G
Sbjct: 207 AGTDDLARHTFISYVDDLAFSSELLYLERAVPGA-----TAGLRTTSVIAQSFAALHGGG 261

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+LP +I    P LV ++ D +  +   +    E L+   ++ A  +++   A
Sbjct: 262 LAILPCFIAAAQPALVPVLPDEVVVTRCFWLTCREDLRKLRRVTALWDYLRAAA 315


>gi|152970396|ref|YP_001335505.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955245|gb|ABR77275.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 297

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 124/289 (42%), Gaps = 9/289 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E+  G +L +R  R LTLT  G K+  
Sbjct: 8   QVYLRICELGSLSAAARALGMSRPMVSRYLEQMESWAGARLIHRSTRRLTLTPAGEKVLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            T  +    +    E Q +   PSG LR+A        L+   L +FL  YP ++++L +
Sbjct: 68  KTRGLTRIADEIAGERQRA--DPSGTLRVACAHFTAMQLISPLLPDFLARYPLLRLELDI 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N  + +  +  D AIR+    ++ + I R+L        AAP +++      +  +L +
Sbjct: 126 NNHPVSLIGERIDVAIRITDNPEAGA-IARRLGVCRSLLCAAPGWMRQHGPLTTPDDLQR 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN + +        + + +     R         L       +++  V G GIA+LP+  
Sbjct: 185 HNCLLYSHF---ASQHWQFSDAQGREASVAVNGNLSAGISSLLLEAAVAGCGIAMLPELE 241

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +    +  L  ++ +    + +VY  Y         L  F + +  + 
Sbjct: 242 ARGAIASGTLEVVLPEWTPKALSVYGIYLSRDYQPDGLPLFLDALQRRL 290


>gi|300704140|ref|YP_003745742.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299071803|emb|CBJ43129.1| Transcriptional regulator, LysR family [Ralstonia solanacearum
           CFBP2957]
          Length = 301

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 139/294 (47%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+ LR+F  VAR G+   AA +L ++QS+ISR I+ LE  +   +F R  +GL +T +G
Sbjct: 7   NWNDLRIFLEVARCGTLGGAARRLKVNQSTISRHITQLEETINAPVFERDNQGLHITARG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +    +          L  S  +PSG +R+ T   +    L G    F   +P I 
Sbjct: 67  RDLIQHVEAMEANAVALSEALGGSHKEPSGAVRLGTMEGIASLYLAGACVHFNQRFPKIS 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+   + + ++   AD  +    P +  SL    +    +H YA+  YL +   P   
Sbjct: 127 IELVTTTQQMHVNQREADIFLSFFPP-EGKSLAVSPIGAFSLHLYASASYLASHGTPEEP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +LD H   ++ D + + ++   WL   D  I  PR+   Q +S ++ M   V G G+ +
Sbjct: 186 ADLDNHRFASYVDDLIQ-LDTVRWL---DEVISHPRL-AFQSSSMIAQMFAAVDGGGVVM 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           LP +   +   L+R++ED +    T++      L+   ++KA   F+    ARD
Sbjct: 241 LPSFARAERFGLIRLLEDQVRVRRTIWMTVHRDLQYLPRIKAVTRFLQETIARD 294


>gi|295699141|ref|YP_003607034.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438354|gb|ADG17523.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 300

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 125/296 (42%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L  F  V+R+G F  AA    +S SS+S  +  LET++G++L  R  R +  TE 
Sbjct: 1   MELNDLAAFVSVSRAGGFRDAARVSGVSASSLSVAVRRLETKLGLRLLNRTTRSVAPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    + ++ ++E     L     KP+G L++     + + +L   L  FL  YPDI
Sbjct: 61  GLRLIEKLTPLFGEMEAALDVLNGFRDKPTGTLKLNVPSSVARIVLPDVLARFLKQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPL 181
           ++++++++  +D+     D  IR  + ++   +       +   A  A+P YL     P 
Sbjct: 121 RVEVVVEDGFVDVLSIGCDAGIRYDERLEQDMIAVPIGARVQRFATAASPAYLDAHGRPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGS 239
              EL  H  +  G      M  + +    +     P    L     +    +   V G 
Sbjct: 181 HPSELLAHACLR-GQFASGAMPTWYFERDGELLQLNPTGPLLVRPGAAIDLAVSGAVAGL 239

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G+  L + +++   D+  L  I+E         +  YP        L+AF +F+  
Sbjct: 240 GVIHLFEDMLRPQLDSGALEAILEPWWQRFSGPFLYYPGHRHVPAPLRAFVDFLKA 295


>gi|258627533|ref|ZP_05722310.1| transcriptional regulator [Vibrio mimicus VM603]
 gi|258580115|gb|EEW05087.1| transcriptional regulator [Vibrio mimicus VM603]
          Length = 300

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 132/292 (45%), Gaps = 9/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R ++ L LT++
Sbjct: 1   MKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGRILLIRSSKELVLTKE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E++ ++E  Q +++++     G++ I+  +   ++ L     EF  LYP++
Sbjct: 61  GEQLFHSYAELFAEIERKQDQVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFSELYPNV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L + +     +    D A+R   P   S  + RKL        A+            
Sbjct: 121 TLRLQVGSGLDYFTQRDLDIALRFG-PQPESDWVARKLARNPSVLCAS-APFAASLSLSH 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q+L+ + L++    +P            D+ +     + L  +   +I+Q  + G GIA
Sbjct: 179 PQQLNHYPLLSLNHKLPWIFHG----KESDQKVQFIPSARLSSDELDTIVQATLQGMGIA 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LP  ++    D+  LV ++ +       VY  +P+      + +A  +++ 
Sbjct: 235 RLPRGLMAPLLDDGQLVELLPEWEIEGADVYLLHPQRRFLPERTQALIDYMI 286


>gi|163856400|ref|YP_001630698.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163260128|emb|CAP42429.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 299

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 123/298 (41%), Gaps = 10/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + VF      GSF  AA+ L LS   + + +  LET +G +L  R  R  +LT+
Sbjct: 1   MDSLTSMAVFVKSVDLGSFAAAADALGLSGPMVGKHVRALETRLGARLLIRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  ++E       +   +P GKLR+   +  G++ +   L      YP 
Sbjct: 61  FGQAYYERCKVVLAEVEAADALAADQLGEPRGKLRVTMPVHFGRHCVAPVLLRLAQQYPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L  +++ +D++    D AIR       + +I R++    M   A+P YLK   +P 
Sbjct: 121 LELDLSFNDRFVDLAEGDYDIAIRTGDLADKAGVIARRVARQRMIVCASPAYLKTHGQPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN--SYLSIMQYCVLGS 239
           ++  L +H  I +     +      WL   D    E  +   +V      +I     LG 
Sbjct: 181 TVAALGQHQAIVY----RRSGRVSPWLFPKDGHPPEEIVPANRVRMDDLDAIADAATLGM 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+A LP +++ D      LV ++ D     +  Y  +    +   K++   + +    
Sbjct: 237 GLAWLPSWLISDRLRMGALVALLPDRPAFLYDAYALWLRTPQLPRKVRLAVDALAEAL 294


>gi|86355925|ref|YP_467817.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280027|gb|ABC89090.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CFN 42]
          Length = 302

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 123/288 (42%), Gaps = 5/288 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   V+   SF  AA +L ++ S+IS  IS LE  +G++L  R  R +  TE+G 
Sbjct: 6   LSQLAVLAAVSEHRSFRAAARELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L         +++     ++++  KP+G LRI         LL   L +FL LYPDI +
Sbjct: 66  LLLERLRPALEEIDVALEAVRDTRGKPAGNLRITAPRFASDILLAPRLGDFLNLYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  ++   DI  +  D  IRL + +++  +  R    +     A+P Y +   +P   +
Sbjct: 126 EIANEDGFTDIVREGFDAGIRLEESLEADMIAVRISPKLTTVIAASPDYFERYPKPEHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I                    + +       L V+     +   + G+G+A L
Sbjct: 186 DLVHHRCIKRRFTNGSIYRWE--FEKDGQELIVAVDGPLVVSEDRLALLAALNGAGLAYL 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            D  V        LVR++ED   P    +  YP   +    L+AF +F
Sbjct: 244 FDMRVHAELAAGRLVRVLEDWCAPYPGPFVYYPSRRQMRPALRAFIDF 291


>gi|83746735|ref|ZP_00943784.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
 gi|83726688|gb|EAP73817.1| Transcriptional regulators, LysR family [Ralstonia solanacearum
           UW551]
          Length = 319

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 134/287 (46%), Gaps = 7/287 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +WD  R+F  VAR+ +   AA++L + Q+++ R+I+ LE E+  KLF R +  L LT 
Sbjct: 25  DMNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLALTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      + H   T +  +  +  + +G +R+ATT  L    +   + +  L +P 
Sbjct: 85  AGEALIGPAEAMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I  +      +++   AD A+R  +P  +  LI R++ TI    YA+  YL+   EP+
Sbjct: 145 IDIVCLASKSIANLTKREADVAVRTLRP-TAPDLIARRVATIETGLYASRGYLRARGEPV 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                  H+L+ +    P+    + W A    P+   R+  LQ +S ++I +  + G GI
Sbjct: 204 EGSAFAGHDLVLY----PRNEVPWMWEALCGEPVAPSRV-VLQSSSAMTIFEAVIAGIGI 258

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + L       +  LVR++         V+      L  T +++A  N
Sbjct: 259 SELVCCRADPHSELVRVLP-HRRRMQDVWLVTHADLHKTARVRALMN 304


>gi|53718057|ref|YP_107043.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|76810053|ref|YP_332046.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126439767|ref|YP_001057502.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126451604|ref|YP_001064752.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134279740|ref|ZP_01766452.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167917353|ref|ZP_02504444.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217419980|ref|ZP_03451486.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|226193644|ref|ZP_03789247.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242315604|ref|ZP_04814620.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254181977|ref|ZP_04888574.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254187906|ref|ZP_04894418.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196379|ref|ZP_04902803.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254258226|ref|ZP_04949280.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254295973|ref|ZP_04963430.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|52208471|emb|CAH34406.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|76579506|gb|ABA48981.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|126219260|gb|ABN82766.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
 gi|126225246|gb|ABN88786.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|134248940|gb|EBA49022.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|157806009|gb|EDO83179.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157935586|gb|EDO91256.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169653122|gb|EDS85815.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|184212515|gb|EDU09558.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|217397284|gb|EEC37300.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|225934222|gb|EEH30206.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242138843|gb|EES25245.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254216915|gb|EET06299.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 300

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +  +L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVVFENRIEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPGFAATHGMPTE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    +IT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLE--PTLISENFLFLRQAILAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++PDY+V D+     +V  ++      F   +Y  Y     +T     F +F+  +AR+
Sbjct: 237 IVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEEARN 295


>gi|218675220|ref|ZP_03524889.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 293

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 133/290 (45%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFVRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   + + +  +P +
Sbjct: 61  GGVFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGKLIERHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P +   L+  KL    +  YA+  YL +   P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERP-EQGRLVSSKLTDYTLGLYASRDYLAHHGRPGD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L  H  I + + +      F         +     +  ++++ +   +    G+GI 
Sbjct: 180 VEALKAHPRIGYVEDL-----LFTASLNFSGEVMRSWDAGFEISTAIGQTEAVRSGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +L DYI +  P L RI+ +V       +  Y E  ++  ++++  +F+  
Sbjct: 235 ILHDYIARQYPELQRILPEVSI-RRAYWTTYHETARDLVRVRSVVDFLQE 283


>gi|209517414|ref|ZP_03266256.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209502181|gb|EEA02195.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 312

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 118/293 (40%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +++F      GSF+ AA QL+++ +  S  +  LE  +  +LF R  R + L++ G 
Sbjct: 4   LDDVQIFVHTVDYGSFSEAARQLNIAPAHASASVQRLEKALDTRLFTRSTRSMQLSDAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +   LE  +  L       SG LR++   D G+NLL   L EF   +P + +
Sbjct: 64  RYLPHARVMIGALEQGEQALANGRGALSGPLRLSAPSDFGRNLLLPWLDEFQHRHPGLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLSI 183
            + + ++  D+     D  +R    +  SSL+  KLV        AAP YL+    P  +
Sbjct: 124 HVKMSDRAADLIRQPLDAVVRYGA-LSDSSLLAMKLVDNNRRALCAAPSYLERHGAPAKV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +HN + +  +  + + +                     +   ++ ++ + G G+  
Sbjct: 183 EDLRRHNCLRY--VWSEQIHERWRFTPPGGERTVAVTGNRISDDADAVRRWAIAGEGLVY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                + D+     LV +          ++       + +  + A   F+  +
Sbjct: 241 KSRLDLIDDLKAGRLVELFPPEYCELAPLHLICAHRAQLSPTINALHAFLRKR 293


>gi|157373771|ref|YP_001472371.1| carbonate dehydratase [Shewanella sediminis HAW-EB3]
 gi|157316145|gb|ABV35243.1| Carbonate dehydratase [Shewanella sediminis HAW-EB3]
          Length = 315

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 136/297 (45%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + + +F+ +  +GS   AA+ L+L +S++SR++  LE ++ +KLF+R +R +TLT  
Sbjct: 1   MKTEDISLFHRIVETGSLVDAADLLNLPKSTVSRRLQTLEDDLKVKLFHRQSRSMTLTAS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +  T  +   LE T +EL ++  +  G LRI          +   + EF+   PD+
Sbjct: 61  GSHFYDKTQSILGDLEQTMVELTDTEAEIGGHLRILIFPVPQLQDIVTGIFEFMDHNPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++LI+  +  D+  +  D A  +      + ++ R++++  +H  A+P YL     P+ 
Sbjct: 121 TVELIVSTEPQDMIRNKIDLAFMVEDAFNENEMVAREMLSEVLHFVASPEYLAKAGTPVL 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL  HN I F     +   +       DR I       L +NS    +Q  + G GIA
Sbjct: 181 PEELSNHNSILFRYPNGRIFNEVP--FGNDRTIAVK--GNLCLNSIELCLQATLSGRGIA 236

Query: 243 LLP-----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            LP     +Y+  +   L  + EDV       Y  YP     +   + F + +    
Sbjct: 237 FLPIEATHEYV--ERGELTMLFEDVEPYIGKCYLVYPSRRFISLASQRFIDHMMAAL 291


>gi|54303232|ref|YP_133225.1| putative transcription regulator [Photobacterium profundum SS9]
 gi|46916660|emb|CAG23425.1| Hypothetical transcription regulator [Photobacterium profundum SS9]
          Length = 334

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 14/301 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            DK   F  V RSGS + AA+Q  +S S+ SR ++ LE ++G+ L  R  R ++ T+ G 
Sbjct: 2   LDKAVFFLHVVRSGSLSEAAKQYGISPSAGSRWLNELEEKMGVSLVKRTTRKISPTQAGL 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    S + +++     E+Q  S +  G ++IA+T    ++ L   + E++   P I  
Sbjct: 62  HLFEQFSTINNQINDVFNEVQNLSHEDKGTIKIASTPLFAKHYLSQIIGEYVHENPFINF 121

Query: 125 QLILDNKDIDISMDYADCAIRL-----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +I    D+D   D  D AIR          + S L++R L+   +    +P Y+K   E
Sbjct: 122 VVIETAFDVDHVHD-VDFAIRANATYRGFQNKDSLLVKRTLLREPLTVCCSPSYIKKYGE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P+   +L +H  +    L+        W+   D       IS  ++ +    +    + G
Sbjct: 181 PIYPYDLTQHLCLYATTLVGGN----KWIFEQDGEYNTVEISQTVEADDSEILKNIALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIA LP  +++ +     LV I+ + I+  F +   +        +   F++F+  +  
Sbjct: 237 GGIAYLPYSLIQRSVAQGKLVPILNNYISSEFELSLYFKPRKHMPARCANFKDFLIQRVE 296

Query: 296 D 296
           +
Sbjct: 297 E 297


>gi|294139899|ref|YP_003555877.1| glycine cleavage system transcriptional activator [Shewanella
           violacea DSS12]
 gi|293326368|dbj|BAJ01099.1| glycine cleavage system transcriptional activator [Shewanella
           violacea DSS12]
          Length = 303

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 111/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLSLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L ++ +       L   L +F    PDI +
Sbjct: 68  GYFLDIKDIFVQLADATDRLLARSA--IGSLTVSMSPSFAIQWLVPRLAKFSENNPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   +    + L   KL    +    +P  L   +      
Sbjct: 126 RIKAVDNDAGPFADDVDVAIYYGQG-NWAGLRADKLKNEVLIPVCSPMLLNGPKPLDKPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKHHTLLH----DMNRHDWQAWFRQCGINDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV    +V+      Y    +     GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEVGKIAAFREWML 289


>gi|162448434|ref|YP_001610801.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161159016|emb|CAN90321.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 322

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 135/293 (46%), Gaps = 5/293 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   LR F +V   GS T AA  L  ++ S+SR+I+ LE  +G++L  R  R +  TE G
Sbjct: 14  NVSDLRAFCLVVDLGSITAAARTLGETKGSVSRRITRLEHALGVELLRRSPRLVQATEDG 73

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        LE   + +Q++  +P G LR+    DLG ++L      F   +P+I 
Sbjct: 74  LAYRMRVGRALELLEDANVAVQQARSRPRGHLRVTAPFDLGLSILAPLSAGFAERFPEIS 133

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L    +D      D A+R    +  SSLI  KL  I +  +AAP YL+        
Sbjct: 134 LELLLTEALLDFDAHQVDVALRATSSLPDSSLIAHKLQHIEVGLFAAPSYLRKHGAVRRP 193

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L+ H L+             +  A   R   E R+ + +  + +    +  + G GIA
Sbjct: 194 EDLEGHRLLLAQTARGHATIALSARARDGRDRAELRVRAAISASDFSFCREVALAGGGIA 253

Query: 243 LLPDYIVKDNP---NLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIF 291
           L+P   V+ +     LV +++D     + ++Y  +P       K++AFR+++ 
Sbjct: 254 LVPAINVRGDLDAKRLVPVLKDYAIHGAASLYLVHPGTRFLPSKIRAFRDYLL 306


>gi|197123721|ref|YP_002135672.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173570|gb|ACG74543.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 303

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 128/299 (42%), Gaps = 14/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR---HARGLTLTE 61
            + LR F   AR GSF+ AA +LH++ +++ + +  LE  +G  LF+R     + L LTE
Sbjct: 7   LNALRAFEAAARHGSFSAAAAELHVTPAAVGQLVRSLEEVLGTPLFHRGVSGRKRLALTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + +L      L++ S   SG L +  +       L   L+ F   +PD
Sbjct: 67  AAQRALPDIRAGFERLGVGVARLKDVSS--SGVLTVTVSPAFAAKWLLPRLEHFHEAWPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L +  + +D +    D  +R   P     L+  KL+   ++   +P  L   R   
Sbjct: 125 LDVRLDVSAELLDFAARGVDIGVRYG-PGGWPGLVSDKLLDEEVYPVCSPT-LLGRRRLR 182

Query: 182 SIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              EL    LI    +  +        WL        E +   L++N+  +++Q  + G 
Sbjct: 183 RPSELAGLRLIHDRSVDARSGFATWDAWLEKAGVKDVETKRG-LRINNSAAVLQAAIDGH 241

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL    + +D+     LVR+  +V  PS    +  Y        K+ AFR+++  +A
Sbjct: 242 GVALARSIMARDDLAAGRLVRLFPEVKFPSVLAYFVVYRPQCATLPKVIAFRDWLEREA 300


>gi|330445125|ref|ZP_08308777.1| gcvA transcriptional dual regulator [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489316|dbj|GAA03274.1| gcvA transcriptional dual regulator [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 286

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 118/280 (42%), Gaps = 11/280 (3%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G        +++  + 
Sbjct: 2   SFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSLLLTEEGQGYFLDIKDIFSAIS 61

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
               ++ E      G L I+         L   L +F   +PDI +++   + D     D
Sbjct: 62  DATDKVLERGS--KGALTISLPPSFAIQWLVPRLTDFNEQHPDIDVRIKAVDLDEGSLTD 119

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D AI   +      L   KL    M    +P  L   +   S+ +L  H L+      
Sbjct: 120 DVDVAIYYGRG-NWPGLRADKLYQEFMMPVCSPMLLMGNKPLHSLDDLKFHTLLH----D 174

Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNL 255
               E  N++   +          +  +    ++Q    G GIAL  + + +   +   L
Sbjct: 175 TSRKEWKNYVRHYNISGVNVNQGPI-FSHSTMVLQAAAHGQGIALGNNVLAQPELEAGRL 233

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V   ++V+      YF   E    TG+++ FR+++  KAR
Sbjct: 234 VCPFDEVLVSKNAFYFVCQERQAETGRIQIFRDWVLAKAR 273


>gi|238755279|ref|ZP_04616623.1| Transcriptional regulator, LysR family [Yersinia ruckeri ATCC
           29473]
 gi|238706513|gb|EEP98886.1| Transcriptional regulator, LysR family [Yersinia ruckeri ATCC
           29473]
          Length = 306

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 136/295 (46%), Gaps = 7/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + VF  V  + SFT A++ L LS+SS+SR+I+ LE  +G  L  R  R + +TE G
Sbjct: 11  NLTAMVVFARVVETMSFTEASKSLQLSKSSVSREIAQLEIRLGTPLLKRTTRKIEVTEVG 70

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++    + ++ +  +  ++    +P G LR+   +  G   +   L  F+     + 
Sbjct: 71  LSYYQYCQRILNEAKNAERFIRNFHEEPIGHLRLVAPVSFGCQYIMPVLNNFISGSIHVN 130

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ ++++ D+ D AI + +     SL+ + L+ I    YA P YL+        
Sbjct: 131 VDLDLTDRPVNMAEDHCDIAIVIGRTPPDHSLL-KPLIDITWGLYATPEYLQQYPNIEKP 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +++ I F          F       + +        + N+ +++M   + G+GIA 
Sbjct: 190 ADLPRYDYIFFRGPAHTISLPFR---KEKQKMDIDVHCRFRANNSVALMSSALAGTGIAY 246

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LPDYI ++      L+R++ D    ++  +  +      + +++ F + +  + +
Sbjct: 247 LPDYIAREALAAGKLIRLLPDWRMDTYHAWMLFKSEQTLSSRVRWFADELQQRLQ 301


>gi|229133268|ref|ZP_04262098.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-ST196]
 gi|228650179|gb|EEL06184.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-ST196]
          Length = 305

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 14/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   ISIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   + +F   YP
Sbjct: 67  EAGRVLLSHSKTIFHEVEQARSAIQDLNGLHHGSLTIGSLLTVVNYLLPPAILDFNKQYP 126

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L        +  +  D  I    P+Q   ++   L    +       +    
Sbjct: 127 NIELSVLGLRTGEIREKLLQNELDIGITF-LPVQDKEIVSIPLYKSELTLVVPTSHSLTE 185

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R+ +SI+EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 186 RKYVSIEELQDYPLI----LLPKNFYLTELITSHCQNFNFKPKPILEISTMESLIQMVAQ 241

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G GI +LP    D++  ++   ++I  +  TP+  +   Y          + F  
Sbjct: 242 GMGITVLPKPYIDFLQNEHIQAIKI--ENPTPTIDIGLIYRRDKYMCAATRKFIE 294


>gi|254228928|ref|ZP_04922350.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151938605|gb|EDN57441.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 321

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 139/302 (46%), Gaps = 17/302 (5%)

Query: 2   SFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + DW   ++ +  V   GSF  AA +L+ + S+IS+++  LE ++G++L  R  R ++ T
Sbjct: 26  TMDWIQSVKSYIRVVEEGSFNAAARKLNTTSSAISKRVQWLEDKIGVQLLKRTTRSISQT 85

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+  ++         ++   E +  +  P+G L+I  T+ +G   L   L +FL  YP
Sbjct: 86  EAGALFYQRAKNQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYP 145

Query: 121 DIQIQLILD--NKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           DI +QL      +  ++S+   D  I R  + + S S     L       YAAP YLK  
Sbjct: 146 DITLQLTTTLPGQLPELSL---DLFISRELEQLNSLSFKATALFEHKAQFYAAPSYLKKY 202

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P  +++L +HN++ +G+   + ++        +R             +  ++      
Sbjct: 203 GTPQCVEDLTEHNVLIWGEKPSREIK-------TNRGKRISLSGNFATTNPEALFHGAKR 255

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GI +  + ++KD+     LV I+ D+     TVY  YP+      + K F +++  + 
Sbjct: 256 GMGILMTNNVMIKDDLKSGALVPILPDITADKATVYAYYPKLDYQHTRTKLFLDYLKSRL 315

Query: 295 RD 296
            +
Sbjct: 316 EE 317


>gi|89074526|ref|ZP_01160998.1| hypothetical D-serine deaminase activator [Photobacterium sp.
           SKA34]
 gi|89049630|gb|EAR55189.1| hypothetical D-serine deaminase activator [Photobacterium sp.
           SKA34]
          Length = 301

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 125/292 (42%), Gaps = 6/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F + A   SFT AAE L L+QS++S +I  LE  +G++LF R  R L LT++G 
Sbjct: 11  LSGLHCFLIAAEQMSFTRAAEVLFLTQSAVSHKIKNLEEALGVQLFIRQPRKLILTDEGL 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L +V +  +   +         +V+ SG + I+      Q  L   LK F+ LYP ++I
Sbjct: 71  LLKQVLAANF--GDIAHEIRDLKNVELSGDINISVPPTFAQTWLLPRLKSFIDLYPMLRI 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   N+ +D   +  DCAI   K  +   L   KL+   M    +  Y        + +
Sbjct: 129 HLRTRNELVDFQTESFDCAIYFGKG-EYQGLHSCKLMDEAMQPVCSHDYAIANDLYDNPE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +  L+       +   +  W    ++   +   S    +     +Q    G G+A+ 
Sbjct: 188 GLMQCLLLHDAAPWARAGRNDEWQLWAEQYGTQLPGSECTFDRSDLALQAAECGIGVAMG 247

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               + +      LV   + +    F+ Y      ++NT K+KAF +++F +
Sbjct: 248 RHSFIAEKLVEKRLVTPFDMMAPSPFSYYVVCRHNMQNTPKIKAFSDWLFSE 299


>gi|319781078|ref|YP_004140554.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166966|gb|ADV10504.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 302

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 133/295 (45%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ ++ F  VA SGS + AA +L  SQ ++ R I  LE  +G+ LF R   G  LTE 
Sbjct: 4   IDWNLIKSFVTVAESGSLSAAARKLSASQPTLGRHIGELEQALGVTLFRRGRHGYELTEA 63

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS L      V  +     +    S     G +RIA +  +   +L        +  P I
Sbjct: 64  GSTLLERGKAVSEQASAFSLLALGSVEAIEGTVRIAASEVVAAYVLPEMTMRLGIEEPGI 123

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++++  N+  ++    AD AIR+ KP Q+  L+ RK+  I + A AA  YL     PL 
Sbjct: 124 EVEIVASNQVENLLRRDADIAIRMVKPAQNE-LMARKVCDIELCACAAKSYLDRRGRPLK 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H+L+ F     +  E          P+        + ++ + + +    G+GI 
Sbjct: 183 PADLVDHDLVGFD----RGDEIIRGFTRHGIPVTRSSF-RFRADNQIVLWEAVRAGNGIG 237

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L  + +   +P + +++ D+  P   V+      ++ + +++   +F+  + + +
Sbjct: 238 LGQEPLADRDPLIEKVLPDLPLPVLPVWLAMHRDVRTSVRIRRVVDFLHEELKRY 292


>gi|209521264|ref|ZP_03269984.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209498306|gb|EDZ98441.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 327

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 12/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SF+ AA++L ++  ++S QI  LE E+G+ LF R  + + LTE G 
Sbjct: 9   LNAIKAFEAAARHESFSRAADELFVTHGAVSHQIRALEAELGVSLFARDGKRVRLTETGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +          +L      ++    +   +L I+         +   +  F+  +P   +
Sbjct: 69  RYATQVRSALMELADATRSIRAGDRER--RLVISMLSSFAARWVTPRIGSFIEAHPQWDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N   D + D  D AIR     +   L    L+        +P++    + P +  
Sbjct: 127 ELLTTNALTDFARDDVDVAIRFGFG-KYPGLHSELLLDEIFFPACSPNF-NGGKLPQTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L K  L+   D + +   D   L        EP+   L  +S   ++Q  V G G+AL 
Sbjct: 185 DLAKFPLLRSDDELWRPWFDAAGLTDW----PEPKRGVLYQDSSN-LLQAAVDGQGVALT 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
              +         LVR+ +      +  YF     +  T ++KAFR+++F +   ++ 
Sbjct: 240 RRSLAMHEIAAGRLVRLFDVDGPSPWQYYFVCLPQMLETARVKAFRDWLFDEVARFRL 297


>gi|90410171|ref|ZP_01218188.1| Hypothetical transcription regulator [Photobacterium profundum
           3TCK]
 gi|90329524|gb|EAS45781.1| Hypothetical transcription regulator [Photobacterium profundum
           3TCK]
          Length = 311

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 135/301 (44%), Gaps = 14/301 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +K+  F  V RSGS + AA+Q  +S S+ SR ++ LE ++G+ L  R  R ++ T+ G 
Sbjct: 2   LNKVVFFLHVVRSGSLSEAAKQYGISASAGSRWLNELEEKMGVGLVKRTTRKISPTQAGL 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    S + +++     E+Q  S +  G ++IA+T    ++ L   + E++   P I  
Sbjct: 62  HLFEQFSTINNQINDVFNEVQNLSNEDKGTIKIASTPLFAKHFLSQIIGEYVHENPFINF 121

Query: 125 QLILDNKDIDISMDYADCAIRL-----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +I    D+D   D  D AIR          + S L++R L+   +    +P Y+K   +
Sbjct: 122 VVIETAFDVDHVHD-VDFAIRANATYRGFQDKDSLLVKRTLLHEPLTVCCSPSYIKKYGK 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P+   +L +H  +    L+        W+   D       IS  ++ +    +    + G
Sbjct: 181 PIYPHDLTQHLCLYATTLVGGN----KWIFEQDGEYNTVEISQTVEADDSEILKNIALAG 236

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIA LP  +++ +     LV I+ + I+  F +   +        +   F++F+  +  
Sbjct: 237 GGIAYLPYSLIQRSVAQGKLVPILNNYISSEFELSLYFKPRKHMPARCANFKDFLIQRVE 296

Query: 296 D 296
           +
Sbjct: 297 E 297


>gi|114706251|ref|ZP_01439153.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Fulvimarina pelagi HTCC2506]
 gi|114538112|gb|EAU41234.1| Bacterial regulatory protein LysR, HTH motif:LysR substrate binding
           domain [Fulvimarina pelagi HTCC2506]
          Length = 293

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 131/292 (44%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  VAR+G    AA +L L+ +++ R++S LE ++G KL +R   G  LT Q
Sbjct: 1   MNWDDARIFLAVARAGQILGAARRLELNHATVGRRLSALEADIGAKLLHRRPNGCELTAQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +     + + E+  + V  SG +RI      G + L   L      +P++
Sbjct: 61  GRAFLAQAELMEAATISARAEIGNADVSLSGTVRIGAPDGFGTSFLAPRLWRLAERHPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   IS   AD A+ + +P +   L+  KL    +  YAA  YL+   EP  
Sbjct: 121 TIQLVPVPRAFSISRREADIAVTVERP-EHGRLVAGKLTDYALGFYAARSYLERHGEPEK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L  H L+   + +           T    + +   S  +++S +  ++    G+GI 
Sbjct: 180 LGDLASHRLVGAVEDLLYSPR-----LTYFADLLQEWPSRFEISSAMGQLEAVAAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +L  +  +    LVRI+ D        +  + E++++  ++ A   FI    
Sbjct: 235 ILHCFSAQRRSELVRILPDERI-DRAYWLVFHESVRDVARIAAVAEFIREAV 285


>gi|190574822|ref|YP_001972667.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190012744|emb|CAQ46373.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 298

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 128/293 (43%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  +F  V  +GS T AA++L LS++ +S  +  LE E+G+ L  R  R L LTE G
Sbjct: 3   SLDRFDIFRAVVEAGSLTAAADRLGLSRAVVSFNLKRLEQELGVTLLLRSTRHLALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +   +     +      +    +  G LR+ TT +  Q  L   L+ F   +P +Q
Sbjct: 63  EQFLQHCVQALDAAQAAIDAARRDQHQLQGVLRLTTTPEYAQLRLIPALEAFRARHPALQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L       D+  +  D AIRL + +  S L   +L    +   AAP  L       + 
Sbjct: 123 LHLSTSPAPADLIPERFDLAIRLGR-LPDSGLHASELERHPLCPVAAPSLLARLPSADAA 181

Query: 184 QE---LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +   L     + +  L    +   +    +      P  + ++V+   S+  + V G+G
Sbjct: 182 DDPVQLGTLPRLGYPRLADVPVVAPDGSDALF--ATNPGNAVVRVDGASSLRAFAVAGAG 239

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +LP ++++D+     L  ++     P  +VY  YP + + + K++   +F+
Sbjct: 240 VTVLPRWLIEDDLAQDRLRPVLRQHRFPQQSVYAVYPHSTQPSPKVRQLIDFL 292


>gi|167621768|ref|YP_001676553.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351509|gb|ABZ74239.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 305

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 131/300 (43%), Gaps = 10/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  AA    + +S +SR+++ LE ++G++L  R  R   +TE G
Sbjct: 3   DLNDLMFFGDVVTHGGFAAAARATGVPKSKLSRRVAVLEEQLGVRLIERSTRRFVVTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H     +  + E     + ES  +P G +R +    + Q  L   L  F  LYP  +
Sbjct: 63  QAFHARCRAMVLEAEGAMALVAESRGEPRGLVRFSCPPGILQA-LSPLLPAFFSLYPGAK 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + ++  N  +++     D A+R+R  I   +SL+ R L + H    AAP  +    +   
Sbjct: 122 LSILSTNAPVNLIDQRIDVALRVRSSIDKDASLMTRGLASSHRILVAAPD-VAKRLDDAP 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I+ L +   +TF D  P+          V     +PR   L      +++   V G+G+A
Sbjct: 181 IEALGQAPTLTFMDQ-PQSWGLTRGDGAVRTIELQPR---LTCGEIFTLINAAVGGAGVA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           LLPD+  +    +  LVR+  D   P  ++Y  +         ++ F +++  +  D  F
Sbjct: 237 LLPDHSCRRELASGALVRLWPDWSGPKSSIYLVFTTRRGQPPVVRVFIDYLAARFGDHLF 296


>gi|149188654|ref|ZP_01866946.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148837564|gb|EDL54509.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 316

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 140/309 (45%), Gaps = 16/309 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    +LR+F  V + GSF  AA   ++  SS+S+QI  LE  +G++L  R  R   LT
Sbjct: 1   MSIT-HQLRLFVDVVQQGSFAKAATLNNMDNSSLSKQIKKLEETLGVQLLNRSTRSFFLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  +   T  +   L+  +        +P G +RI + + LGQ  +Q  +  F+  YP
Sbjct: 60  SAGEDILAETHVLLESLDNIKGIADSYQSEPKGVIRIVSAVFLGQQYVQPVISCFMRKYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q+ L LD++  DI  D+ D AIR+ K +  S+LI +KL   +    A+  +LK    P
Sbjct: 120 NVQVTLHLDDRKTDIIADHFDLAIRMGK-LTDSNLIAKKLAKTNFAIVASKEFLKQHGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLAT--VDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            + +EL     + + +    C++ F    T               +VN   ++M     G
Sbjct: 179 QTPEELITLPAVIYNNG-DVCLDSFKMSRTPSCQEMTSYKMQGNYKVNDVRTMMSATQNG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSF--TVYFCYPEALKNTGKLKAFRN----F 289
            G  ++  + ++   D   LV ++ D    +    +Y  YP   + T  +  F N    +
Sbjct: 238 IGYCVIDLFNLEKPIDELGLVPLLTDYTLSTQDTGIYAIYPHRKQ-TLLVSEFINQLKSY 296

Query: 290 IFLKARDWK 298
           I   AR W+
Sbjct: 297 IGEPAR-WE 304


>gi|134294875|ref|YP_001118610.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134138032|gb|ABO53775.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 328

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 120/291 (41%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE+ +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEQQSFRRAAHHLGVSNALVTRSIAMLESHLNTRLIHRTTRNLSLTEAGLRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  +  +P+G LR+  +  L    L   +  F   YP++++QL 
Sbjct: 67  DGCRALLEEFDHLEASVAHAVREPAGTLRVVASGLLSPLTLTPLVSGFRHRYPELRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +  +D+     D  I     +  + +LI   L      A AAP YL+   EP +  +L
Sbjct: 127 VADGPLDVLDSGYDVGIVTGDRLDGNPTLIGHTLAPNPFVACAAPAYLERRGEPRAPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +       +    +  +                VN    +    + GSGIA+LP+
Sbjct: 187 PGHDWVALAP--HQHAPAWRLVGHDGAAHSVTVRPACTVNQLALVHAAALAGSGIAVLPE 244

Query: 247 YIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             V D      LVR++       P   +   YP       + ++F      
Sbjct: 245 SCVADALAAGTLVRLLPGYRIDDPDAQLSLVYPNRQYVPARTRSFVEHALE 295


>gi|298487771|ref|ZP_07005812.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298157863|gb|EFH98942.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 294

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 120/290 (41%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  G 
Sbjct: 4   IEDLRLAVTLSRCESLSAAARVLNVSPPALSMRLRKLETQLGITLANRDARRLSLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  + ++ +  +LE      ++   +  G LR+A     G+  +   L  F  L+P + +
Sbjct: 64  RFAQESAHLLEQLEALPESFKQHDERLVGTLRLAAPFGYGRQRIAPLLARFAKLHPQLCL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L           +D  I +   +  S  I R L   H    A+P YL+    P +  
Sbjct: 124 HLDLRETPW-PDRHDSDAVIHIGS-LNDSLWIARPLAHNHRWLCASPAYLEQHGAPSTPD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  I   +          W  +  +     RI   L  N      ++   G GI L
Sbjct: 182 ELACHRCICIRENDEDVTL---WHLSKGQAKKTLRIEPALLSNDGSVARRWAEQGLGIVL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D   +  LVR++ D    S  +    P     + +++A   F+
Sbjct: 239 RSQWDVSDAIASGRLVRVLADWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|221067386|ref|ZP_03543491.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220712409|gb|EED67777.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 287

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 136/298 (45%), Gaps = 16/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR+F   AR  S T AA++LH++Q+++S+ I  LE  +G  LF R  RGL LT
Sbjct: 1   MQLPLNALRMFDAAARHLSLTRAAQELHVTQAAVSQHIRNLEERLGKPLFRRLPRGLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L  V ++ + ++E +  ++ E   +P   L +          L   L +F  L+P
Sbjct: 61  DEGQALWPVVAQSFERIEQSLQQVAE--PRPREILSVGVVGTFAIGWLIPRLSQFQQLHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L+ +N  +D++ +  D A+R        +   + L+   +     P   +  REP
Sbjct: 119 YIDLRLLTNNNRVDLAGEGLDAAVRFGDGAWHGT-HAQMLLRAPLSPMCTPMLAQQLREP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +  L+       +  E   W A +D+    P       +S L++ +    G+G
Sbjct: 178 ---ADLARQTLL----RSYRTQEWEGWFAGLDQTA--PLARGAMFDSSLTLAEAAAQGAG 228

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IALLP  + +       LVR        +   +  Y ++ + +  L+ FR ++  + +
Sbjct: 229 IALLPARMFEHMLQQGRLVRPFA-HEVDTGAYWLTYLKSRQASSALQTFRQWLMTQLQ 285


>gi|46203491|ref|ZP_00051433.2| COG0583: Transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 226

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/222 (38%), Positives = 142/222 (63%), Gaps = 1/222 (0%)

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
           E T+  L E+S +PSG LR+ TT+ LG + L   + EFL LYPD++I+L+L N+++D++M
Sbjct: 6   ENTRARLVETSERPSGDLRVTTTVGLGTSWLSQRVSEFLDLYPDVRIELVLTNEELDLAM 65

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
             AD AIR+R+P Q   LIQR+L T+H HA+A+P Y+K   EP +I +LD+H L++FG  
Sbjct: 66  READIAIRMRRPAQ-PDLIQRRLFTVHYHAFASPDYVKRFGEPKTIADLDEHRLVSFGGN 124

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNPNLVR 257
            P  +   ++LA++ R   + R     VN+  ++ +    G G+ +LPDY V  N +LV+
Sbjct: 125 EPSYLLATHYLASIGREGDDRRPVHFTVNNIAALHKAMEAGIGVGILPDYAVDGNESLVQ 184

Query: 258 IMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           ++ +   P+   Y  Y E +++  +++AFR+F+  KA+ W +
Sbjct: 185 VLRESEMPTMESYLVYAEEMRSVARVQAFRDFLVNKAQRWTY 226


>gi|222082250|ref|YP_002541615.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726929|gb|ACM30018.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 314

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 137/298 (45%), Gaps = 8/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + ++L  +  V  +GSFT AAE+L ++++ +S Q++ LE E+G+ L  R  R L  T++
Sbjct: 5   LNLNRLIFYTTVVDTGSFTLAAERLGVAKAVVSHQVARLEQELGVTLLTRTTRRLHATDE 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E    E+ + + +PSG L +  ++D G  ++   +  +   +P +
Sbjct: 65  GRLFYGRCVIILREAEAAYAEMSQKASEPSGMLTLTASLDYGAAVVAPTIAAYRQRFPQM 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ +I D+  +D++    D AIR+   +  SS   R+L T   +  AAP  +       S
Sbjct: 125 QVNVIFDDDVMDLAAGQVDLAIRVGW-LADSSNQARRLGTFDQYLVAAPSLIGAMPSMSS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
             +      +    L       F+     +R      ++C +  +   +     + G G+
Sbjct: 184 PADAINLPWVANAALRNPLRWIFS---HAERETVTIDVNCPVTADKTPAAYACVLAGVGV 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++ PDY+   +     LVRI+ D   P+  ++  +P A     +++AF + +    R 
Sbjct: 241 SVFPDYMAAKDIEAGRLVRILPDWSLPAGGIHAVFPSARFRPARVRAFVDMLKAAERQ 298


>gi|148255632|ref|YP_001240217.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146407805|gb|ABQ36311.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 302

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 131/299 (43%), Gaps = 13/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     ++ F   AR+GSF+ AA QL L+ S +++++S LE  +  KL  R  R L LT
Sbjct: 1   MSDSLLNMKAFVATARNGSFSEAARQLGLAPSVVTKRVSHLEWSMKCKLLRRSTRRLQLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +      ++  + +     ++ S  +  G +RI          L   L  F + YP
Sbjct: 61  EIGERYLETMQQIVREYDEMAAGVKRSPHEIEGHIRIKAPGSPMAIDLPRLLSSFQIKYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++ +L ++ ++   +  D  + +  P     +I+  L+       AAP YL    +P
Sbjct: 121 RVVLEAVLVDRTVNPVEEGFDIVLTM-MPSSFHGVIEEPLLAFPRVLCAAPSYLARRGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I++L  H+ + F  +    +  F+  + +      PR   L  N+   +++    G G
Sbjct: 180 RHIRDLADHDCLVFTPM--GSVWTFDGKSGLTTVAVRPR---LLTNNNGLLVEALSAGGG 234

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IA++   +V     +  L+ ++ + + P   V    P A  N  +++     +  + RD
Sbjct: 235 IAVVSRKVVAPGLRSGALIEVLPEALLPDLWVKALVPTARANLARVQT----LLSEIRD 289


>gi|117618325|ref|YP_856481.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559732|gb|ABK36680.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 301

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 9/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +  +F  V  +GS T AA+ L ++ S++S+ IS LE+ +G+ L +R  R L LTE G 
Sbjct: 4   LKRYAIFAAVVEAGSMTGAAKALGMTPSAVSQHISQLESLLGLTLLHRSTRRLNLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            + +    +   L  T++ L E      G++RI   + +    L   L   L  +P + I
Sbjct: 64  VVWQGCQSLQQTLNQTELRLSEVRDSLLGEVRITAPVGMAGQPLARALSPLLQAHPGLCI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+I D++  D+  +  D A+R+   +  S+L+ RKL    M   A+P YL     P S +
Sbjct: 124 QIIADDEKRDLIAERIDVALRVG-TLSDSTLVARKLGQTRMLLCASPAYLARKGTPRSPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H+ +   D++   +  F+      R   +PR+ C   N+ L + Q+ + G G++L 
Sbjct: 183 ALLDHDWLA-ADMLSGGLTFFDEKGQGHRVKPKPRVVC---NNVLPLRQFTLAGQGVSLQ 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+  + D+     L+ ++     P   ++   P+  +   K++     +
Sbjct: 239 PEGEIADDLASGRLLELLPGFRVPPMEIHAITPQ-REIPEKVRRVIAAL 286


>gi|209519006|ref|ZP_03267815.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209500589|gb|EEA00636.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 322

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 119/290 (41%), Gaps = 10/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+F  +    +F  A E L LS S +SR I+ LE  +G +LF+R  R  +LTE   
Sbjct: 4   IESLRLFRTIVEVRNFRRAGEMLDLSPSVVSRSIASLEERLGTRLFHRSTRQFSLTEAAE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V   L+  +         P+G LR+          L   +  F   +P+I +
Sbjct: 64  HFYEGCCRVLDDLDCLEASAAGRGRIPAGVLRVVAHTTTALTWLAPLIASFKRKHPNITL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L  + +D++ D  D  I L   + +   + R L  + +       YL     P    
Sbjct: 124 DITLTERSVDLTADGYDLGIVLPYMLATDLAVTRLLQRLPLVVVTTQAYLARRAPPRHPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  +T    +P  M        +D+  +  P    +  N+ L      + G G+ L
Sbjct: 184 DLADHVFVT----VPPSMHKPTLTFRIDQENVAVPIKYEIASNNPLFNRDIILEGFGVGL 239

Query: 244 LPDYIVKDN---PNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRN 288
           LP  +V+ +     LVR++E  +++  +  V   Y        K++AF +
Sbjct: 240 LPFTLVEQDIKAGRLVRLLENFEIVDTAAEVRLAYIGRALLPAKVRAFID 289


>gi|330816178|ref|YP_004359883.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327368571|gb|AEA59927.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 318

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 123/297 (41%), Gaps = 10/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+A  GS+T AA +L +S++++S +I+ LE   G+ L  R  R + LTE G 
Sbjct: 10  WAHLHWLTVLADQGSYTAAAGRLGVSKAAVSLKIAELERAAGVPLVQRTTRSVRLTEAGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L   T  +Y ++  +   +++++    G LR++  + L +  L   L EF   +P+++I
Sbjct: 70  HLVDETRPLYERIAQSFSGVRDTAEVVRGSLRVSAPVALARQQLVPRLAEFRRRHPEVRI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ + ++ +  D AIR       +  +  +L        A P YL     P    
Sbjct: 130 QLDVSDRLVSLATEGYDLAIRHSASAPETH-VAWQLCRTVSLLVATPAYLAARGRPGHPD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE---PRISCLQVNSYLSIMQYCVLGSGI 241
           EL  H+ + +          F    T  +       P       N+   +    +   GI
Sbjct: 189 ELAGHDCLFYPRSHDSAAWTFERAGTRRQRAARVTVPIAGPFCANNSEVLRDAALDDLGI 248

Query: 242 ALLPDY---IVKDNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFL 292
           ALLPD+          LVR++ +          +    P A      + AF  ++  
Sbjct: 249 ALLPDFSAVAALQAGTLVRVLPEWRPVGVFAEQLLAVRPYATHVPRVVTAFVAYLRE 305


>gi|148553281|ref|YP_001260863.1| transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498471|gb|ABQ66725.1| transcriptional regulator [Sphingomonas wittichii RW1]
          Length = 297

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 129/301 (42%), Gaps = 8/301 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  VA  GSF+ AA ++ +S + ++  ++ LE  +G++LF R  R + LTE
Sbjct: 1   MDRLTAMEAFVAVAELGSFSRAAARMRMSAAMMTLHVARLEEHLGVRLFNRTTRRVDLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L        H     +  L+  S   SG++RI     +G   +   L+ F  L+P 
Sbjct: 61  DGRELLDHARAALHAYVQAENALKPGSG-LSGRVRIDAPASIGHGFVVPALEHFHRLHPG 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + L L ++      D  D  +R+ +    +  I   L    +   AAP YL     P 
Sbjct: 120 IVVDLSLGDRGTVFRADGFDILLRVGEA-PLAGWITVPLGATRLCCLAAPDYLDRHGTPE 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L++H  I +  +       ++ L    R +     +    N   +IM     G GI
Sbjct: 179 TPEDLNEHRCILYASVEGPGGNPWS-LVRNGRRVRIRPPAAFTFNDGAAIMAMTAAGLGI 237

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A   + +  D   +  L+R++ED  TP+  V     +       ++A  +F+  +  DW+
Sbjct: 238 AQNLEMLAHDALQSGTLLRVLEDWTTPTLPVVLMSAKDRYALPYVRAAMDFLAERI-DWR 296

Query: 299 F 299
            
Sbjct: 297 L 297


>gi|238758281|ref|ZP_04619459.1| Transcriptional regulatory protein [Yersinia aldovae ATCC 35236]
 gi|238703404|gb|EEP95943.1| Transcriptional regulatory protein [Yersinia aldovae ATCC 35236]
          Length = 284

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/280 (26%), Positives = 122/280 (43%), Gaps = 4/280 (1%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V R  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G +L       
Sbjct: 2   VVRERSFTKAAAKLGVSQSALSHSIRGLEDRLELRLLTRTTRSVAPTEAGERLANSLGPR 61

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
           + ++E+    L E   +P+G +RI        ++L   LK FL+ Y DI +++ +DN   
Sbjct: 62  FAEIESELNALSEMRARPAGNIRITAGEHAVDSILWPVLKSFLVEYSDINVEITVDNTLT 121

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           DI     D  IRL + +    +  R    + M    +P YL     P++  +L  H  I 
Sbjct: 122 DIVTGRFDAGIRLGEQVAKDMIAVRIGADMSMAVVGSPSYLAKYDIPVTPADLQNHRCIN 181

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK--- 250
                   +  +       R +       L  NS    +    +G G+ ++P   VK   
Sbjct: 182 MRLPTMDGLYAWE-FEKAGRELKVRVDGQLTFNSLRQRIDAATIGFGLTMVPADTVKTEI 240

Query: 251 DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + +L+R++E+   P    Y  YP   ++T     F + +
Sbjct: 241 ADGSLIRVLEEWCEPFPGYYLYYPSRRQHTTTFSLFVDAL 280


>gi|229588213|ref|YP_002870332.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360079|emb|CAY46933.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 308

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 120/293 (40%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + LS +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDLSPAVASAALKRIEQQLGARLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       L+  +  L       SG L+++   D G+N L   L EF   YP + +
Sbjct: 64  GFLEYARAALSSLDEGRRLLASGQDHVSGVLQLSAPSDFGRNQLLPWLDEFQREYPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSL+   +   +     A+P YL    EP  +
Sbjct: 124 RLLLGDRIADLFRQPVDIALRYGEP-EDSSLVALPVAPNNVRVLCASPSYLARQGEPRHL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +HN + +  ++   + D        R +          +    + ++ V G GIA 
Sbjct: 183 EQLAQHNCLLY--MLGSRVHDHWSFHDGKREVSLTVSGDRFSDDADVVRRWAVAGVGIAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V  +     L  I+ ++      +        + +  +   R  +  +
Sbjct: 241 KSWLDVSTDVLAGRLRVILPELRGERTPLNLLCAHRAQLSKPINLLREMLVSR 293


>gi|148652886|ref|YP_001279979.1| LysR family transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571970|gb|ABQ94029.1| transcriptional regulator, LysR family [Psychrobacter sp. PRwf-1]
          Length = 205

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 1/199 (0%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D + +F  V   GSF+ AA++L L+ S +S++I+ LE  +  +L YR  R L+LT+ G  
Sbjct: 5   DDMVLFVQVVDDGSFSKAADKLGLTNSVVSKRIARLEESLNTQLLYRTTRKLSLTDAGRT 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+          +  Q  +        G +RI   +     LL   + +F   YPDI ++
Sbjct: 65  LYHKAKIAQSAFQEAQNAVTRYGEDMKGLIRITMPVVSANLLLSDAIADFCKKYPDISVE 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L + N+ +D+  +  D AIR  K ++ SSLI R+L+       AAP YLK    P +  +
Sbjct: 125 LNITNRLVDLIEEGFDLAIRTAK-LEDSSLIARRLIDSQWIICAAPKYLKQHGTPKTHDD 183

Query: 186 LDKHNLITFGDLIPKCMED 204
           L  H  + F  L      D
Sbjct: 184 LIHHECLMFDFLPSLNRGD 202


>gi|288959528|ref|YP_003449869.1| HTH-type transcriptional activator [Azospirillum sp. B510]
 gi|288911836|dbj|BAI73325.1| HTH-type transcriptional activator [Azospirillum sp. B510]
          Length = 296

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 126/285 (44%), Gaps = 6/285 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            WD  R F  V R GS + AA  L L+Q +++R ++ LE  VG  LF R  RGL  T+  
Sbjct: 7   SWDLYRSFLAVVREGSLSAAARALGLTQPTLARHVAALEEAVGGSLFLRSPRGLAPTDAA 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +                +  G +R+  +  +G  +L   L +    +P ++
Sbjct: 67  LALLPQAEALEAAAAGLWRTASGWGAEVRGTVRVTASEVVGARILPAILADLRHRHPALE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+L N   D+    AD A+R+ +P Q + L+ R++  I +  +A   YL     P   
Sbjct: 127 IELVLSNAVDDLLQRDADVAVRMVEPDQQA-LVVRRVGIIALGMHAHRDYLVRHGSPRHP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+LI F    P           V  P        L+ +S+L+ +     G GI +
Sbjct: 186 ADLGRHSLIGFDRETPDIRAMIRRAPAVALPRF-----ALRSDSHLAQLAAIEAGFGIGI 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
               + + NP+LVR++ D       ++    E L++T + +A  +
Sbjct: 241 CQVPLARRNPDLVRVLADAFDMPMGMWVAMHEDLRSTPRCRAVFD 285


>gi|213966912|ref|ZP_03395062.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301381595|ref|ZP_07230013.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059651|ref|ZP_07251192.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131902|ref|ZP_07257892.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928234|gb|EEB61779.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 304

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F  +AR  SF  A  ++ +S S++S  + GLET +G++L  R  R +TLT  G
Sbjct: 7   NLADIVYFLAIARHQSFRKAGLEVGISASALSHAMKGLETRLGVRLLNRTTRSVTLTAAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L  + S   + +      L     +P+G++R+    D  + LL   L  F+  YPDI+
Sbjct: 67  EELQGLISAPVNDIGQALETLNRLRDEPAGRIRLNVLSDGAKLLLGPVLPVFIDRYPDIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L + NK +DI  D  D  IR    +    + QR    +      AP YL+    P   
Sbjct: 127 VDLTVTNKMVDIIGDGHDAGIRFGGTVPEDMIAQRLSPDVAWAVVGAPAYLQRFGTPKHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L +H  +    +       ++W  + D    E      + ++     +   + G+G+ 
Sbjct: 187 EDLHQHRCL---RVRLGNAHIYHWQFSKDGQRMEIDAPGAITIDEARVGVAMAMRGAGLM 243

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +   +V+      +L R++ED        +  Y    +    L+   + I  
Sbjct: 244 YVLASVVERQITEGSLQRVLEDWTHYDPGFHIYYSSFRQVPVGLRLLIDLIRE 296


>gi|288962388|ref|YP_003452683.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914654|dbj|BAI76139.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 302

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 131/294 (44%), Gaps = 11/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + +R F  VAR  SFT AA++L ++Q ++SR +  L+ ++G++L  R  RG+ LT  G
Sbjct: 16  SLNAVRSFVAVARHLSFTRAADELAVTQGAVSRMMQTLQADLGVELIRRVGRGIELTPAG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  H   S    ++       +       G LR++    L Q  L   LK F    PDIQ
Sbjct: 76  AAFHGEASAALDRIAAAVRATRAQDG---GVLRVSALPTLTQRWLIPRLKRFQAENPDIQ 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +    +D + ++ D AIR        + +   L+   M  + AP  L         
Sbjct: 133 VEVGIGEHRVDFAKEHIDIAIRYGVEEWPGAEMA-TLMPETMGVFCAPSLLDQGPPLRRP 191

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H L+       +      +LA    P+ E  +S L    +  I++    G G+AL
Sbjct: 192 ADLASHRLLRH---TTRPDSWRVYLAAFGLPLPESALS-LAFEHFFMIIEAASAGMGVAL 247

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP ++ +++     LV+ +++ + P       +    +   +++ F+ ++  +A
Sbjct: 248 LPVFLAREDVASGRLVQPIQETLRPRGRYLIAHAPGAERARRVRRFKEWLLSEA 301


>gi|90420616|ref|ZP_01228523.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335344|gb|EAS49097.1| transcriptional regulator, LysR family [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 295

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 133/288 (46%), Gaps = 7/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    AA +L L+ +++ R+++ LET +G +L  R   G  LT  
Sbjct: 1   MNWDDVRLFLAVARAGQILAAARRLELNHATVGRRLTALETALGARLLDRRPNGCELTPT 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +   +   + ++  + +  SG +R+ T    G   L   L      +PD+
Sbjct: 61  GRDFLEQAERMEAAMLAARADIGATELALSGTVRVGTPDGFGTAFLAPRLWRLTERHPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL+   +   IS   AD AI + +P ++  L+  KL    +  YA+  Y+     P S
Sbjct: 121 TVQLVPVPRAFSISRREADIAITVARP-EAGRLVAGKLTDYALGLYASRGYIAAHGAPAS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL +H L+   + +            V R       +  +V+S +   +    G+GI 
Sbjct: 180 LAELGRHRLVGAVEDLLYSPRLAYHTDIVARW-----PAHYEVSSAIGQTEAVAAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +L  ++  D P L RI+ +  T   + +  Y E++++  ++ A  +FI
Sbjct: 235 ILHGFMAADRPQLTRILPE-ETIHRSYWLVYHESVRDIRRIAAVADFI 281


>gi|294012055|ref|YP_003545515.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292675385|dbj|BAI96903.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 292

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDWD +RVF  VAR+     AA  L +  ++ISR+++ LE  +G +LF   A   TLT  
Sbjct: 2   FDWDDIRVFLAVARTRKIAPAARALGIDATTISRRLARLERALGPELFELGAGERTLTAH 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +         E        SG++R++     G  +L   L +F   +P I
Sbjct: 62  GQALLHHAESIESAALAAMEEATGREHHLSGQVRLSVAEGFGTWVLAPGLADFSRRHPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ LI  +  ++ S   AD A+ L +P Q   L  R++    +H YA+P YL     P S
Sbjct: 122 RLDLITASGFLNPSKREADMAVMLARP-QRGRLSVRRMGDYRLHLYASPAYLAQAGTPGS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H L+ +        E  ++L  V+  +     + L+  S     +    G+GI 
Sbjct: 181 TADLRGHVLVGYVPEFIFSPE-LDYLDEVEAGLE----ASLRATSINMQHRMIAEGAGIG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +LPD+I   +P L+ +M D +    + +      LK   ++ A   ++  +
Sbjct: 236 VLPDFIAGRDPALMPVMADRVEIMRSFWLVTHGDLKKLPRIAAVATWLQER 286


>gi|261821648|ref|YP_003259754.1| LysR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261605661|gb|ACX88147.1| transcriptional regulator, LysR family [Pectobacterium wasabiae
           WPP163]
          Length = 300

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 130/301 (43%), Gaps = 27/301 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS+T AA  L +S S+IS+ I  LE  +G+ LF R  R L LT +G 
Sbjct: 10  LTGLIAFARAGALGSYTAAARSLSVSPSAISKSIQRLEKRLGVTLFTRTTRSLVLTAEGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +LH     +    E  +   + +  +P+G LRIA ++  G +++   L +F  L+P + I
Sbjct: 70  ELHERALRLLRDAEEFEQIAKRTHAEPTGTLRIAASLPTGVHMIAPVLPQFCALHPKVTI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++ + I  +  D AIR+   +  S+L+ R+L    +  YA+P YL +C       
Sbjct: 130 DLRLSDRVVSIVDENIDIAIRIGD-LADSNLLSRRLPPYQIGCYASPEYLASCAPLEHPN 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ----------- 233
           +L  H  +         +  + +    +R I     S + V++  +++            
Sbjct: 189 DLIGHKTVNLRYQNTGQLFRWPFRFG-EREIEIVPSSAVTVDASEAVIAAIAAGAGIGMA 247

Query: 234 ---YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                +           +V+D   LV ++ D       +   + E+ ++   ++AF + +
Sbjct: 248 SNFMAIS----------LVRD-KKLVPVLSDFAVERRNISAVWHESRRSNPAVRAFLDHM 296

Query: 291 F 291
            
Sbjct: 297 L 297


>gi|271501369|ref|YP_003334394.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344924|gb|ACZ77689.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 320

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/302 (21%), Positives = 125/302 (41%), Gaps = 7/302 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   +  F      GS + AAE   +S  + S+ +  LET +G++LF+R  R ++LT
Sbjct: 1   MISELRSITTFVSTVELGSLSKAAEAQQISPQAASKALKQLETYLGVRLFHRTTRSMSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G +           L+      +++    +G LRI     +GQ ++   L E+  LYP
Sbjct: 61  EEGQRFLEAAQPALIGLQQALSAAKQTREAFAGALRIVGPRSVGQMIIGNVLDEYCRLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q  + LD++  +   +  D  +R+    Q   LI R+L  + +   A+P YL+    P
Sbjct: 121 EVQPDVQLDDRIGNWVEERVDVGLRISVSPQD-GLIARRLFPLQLIICASPTYLRKYGIP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
           L++ +L  H    F            W   V   + E  +   +  N     +   + G 
Sbjct: 180 LTLNDLSIHRCSVFRHA--GTGHVIPWHVKVGENMQEQLVRPAISTNDETVELGVVLAGE 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            I  L       +     LV ++ + ++   +++  Y        +++ F +    +  D
Sbjct: 238 AIGQLAGPTAAAHIRAGRLVPLLLEHMSQIHSLFLYYGSRTAQPARVRRFIDLAVERLTD 297

Query: 297 WK 298
            +
Sbjct: 298 SQ 299


>gi|218513570|ref|ZP_03510410.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli 8C-3]
          Length = 332

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 125/299 (41%), Gaps = 21/299 (7%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  V  +GSF+ AA  L ++Q ++SRQ++ LE     +L +R   GL+LT 
Sbjct: 1   MDIVSALRTFQRVVETGSFSAAAHDLDVTQPAVSRQVAALEGHFNTRLLHRTTSGLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G ++  +   +   +E             SGK+R++    LG   L   L + L  +P 
Sbjct: 61  EGERMLPMALRIIEAVEELGDAAGSEGAMASGKVRLSVPAPLGLY-LSERLGDLLAAHPK 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+   +  D+  +  D  +RL  P+  SSL+ R++        A+P YL     P 
Sbjct: 120 LSVELLFREESSDMIEERLDLEVRLG-PVADSSLVCRRIGWTTAFLVASPAYLARKAAPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQ------- 233
           + +++  H  + +     +  E  +W  +        RIS  L   + ++I +       
Sbjct: 179 TPRDIKDHECLWYT----RAGEANSWSFSNGSEDISVRISPRLTACNAVAIHRAALAGAG 234

Query: 234 -YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +    I   PD        LV +M+D       V   YP       ++K   +F+ 
Sbjct: 235 LAVLSH--IIATPDIAA---GRLVPVMKDFQPSRLPVTVVYPSRRNMPLRVKTVLDFLI 288


>gi|226943648|ref|YP_002798721.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226718575|gb|ACO77746.1| transcriptional regulatory protein, LysR family [Azotobacter
           vinelandii DJ]
          Length = 318

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 127/297 (42%), Gaps = 15/297 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +F  V   GSF+ AA +  L+ S+++R+I GLE  +G  LF R    +  T  G   
Sbjct: 9   QLELFLDVLECGSFSAAARRRQLTPSAVARRIDGLEQTLGSPLFQRSTHEVRATPAGLAF 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
              +  +  +L   + E+      P G +R+      G+  L   + EFL  YP + +QL
Sbjct: 69  AERSRRILDELRLARAEVVSLDSAPEGLIRVDAPAPFGRRRLAPVIAEFLAAYPGVDVQL 128

Query: 127 ILDNKDIDISMDY---ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L +  ID   ++    D  +R+  P+  S L+   L  +   A A+P YL     P   
Sbjct: 129 RLIDSFIDQQGEHLGQVDLVLRIG-PLADSRLVATPLAPMRRIACASPDYLDRRGIPGDP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSGI 241
            EL +H+ + +  L P       W   +D  I    P    +  N+  +++   + G GI
Sbjct: 188 CELPEHDGLDWDGLAP----PHAWRFAIDGQIRTIRPGRRRMTANNAETLLFGALAGLGI 243

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTG--KLKAFRNFIFLK 293
           A LP +++ ++     L+ +  +   P       Y    +  G  + +   +F+  +
Sbjct: 244 AHLPTWLISEHLLRGELLPLFCENGLPPPESSGVYALRQRPAGASRTRLLLDFLKSR 300


>gi|323497173|ref|ZP_08102193.1| Transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323317748|gb|EGA70739.1| Transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 306

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 137/301 (45%), Gaps = 11/301 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D+ ++ VF  +  SGS T AA++L +S+S +S  +  LE  +G+KL  R  R  +LT
Sbjct: 1   MKSDFHRMLVFAQIVESGSMTKAADELDVSKSVLSHHLQSLEQHLGVKLLTRTTRRQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G + ++   E+   L   + E++ S    +G + I +   L  +++  ++ E +  +P
Sbjct: 61  LSGQRYYQRCLEMKKLLSLAEEEVRNSDTDLAGTIAITSPHTLMTHIIGPSMCELVKQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--R 178
            I+ +L   +  +++   Y D AI + + +  S+    K+  +      +P Y++     
Sbjct: 121 RIEPRLYASDMRMNLIDKYLDLAITVGQ-LPDSTSRAIKIGELEQVLCCSPEYIEKRNLS 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVL 237
            P++  EL +H+ I           +      ++      R    ++ +S  +I    + 
Sbjct: 180 LPITETELTEHDYIA----NQWEGINVERKFPLNSQHTIYRFQSTRIGDSVPTIRMMALS 235

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GIA LP   +K   ++ +L+++  + +  S  V+  +    +   +++A    I   A
Sbjct: 236 GLGIACLPILAIKEELESGHLIKLTSNQVKLSAPVWIVHNFGTQVPARIRAIIELIKENA 295

Query: 295 R 295
           R
Sbjct: 296 R 296


>gi|154251278|ref|YP_001412102.1| LysR family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gi|154155228|gb|ABS62445.1| transcriptional regulator, LysR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 309

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 126/293 (43%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA QL L+Q ++ R +  LE  +G+ LF R   GL  TE   
Sbjct: 8   WELYRSFLAVVREGSLSGAARQLGLTQPTVGRHVDALEEALGVGLFTRSQGGLAPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    E  +      + +  G +RI  +  +G  +L   L  F   +P I I
Sbjct: 68  SLVPHAEAMSMAAEALRRAASGEAEEDRGTVRITASEMIGTEVLPSILAAFCEKHPRIAI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L N+  D+    AD AIR+ +P Q+S L+ +K  TI +  +A  + ++    P S++
Sbjct: 128 ELVLSNRTDDLIRRDADIAIRMVRPTQTS-LVAKKCGTIGLGLHAHKNLIQRFGMPQSVE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ +I F             L  +        +   + +S +        G G  + 
Sbjct: 187 DLTQYPIIGFDRESS-----IRRLKDLGGFPLSRELFAFRCDSDVGQFAALRAGVGFGMC 241

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              +    P+LV ++   I     V+    E LK + +++   + +  +   +
Sbjct: 242 QYPLALRYPDLVSVLPGAIDFELDVWIAMHEDLKTSRRMRLMFDHLAEEMSAY 294


>gi|170748352|ref|YP_001754612.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654874|gb|ACB23929.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 306

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 125/302 (41%), Gaps = 11/302 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  VAR+G F   A     S SS+S  +  LE  +G++L  R  R +  T
Sbjct: 1   MTRDLTDLAAFVTVARAGGFREGARAGGGSASSLSEAVRRLEAGLGVRLLNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L         ++E+    +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGTRLLERLGPALAEVESALDVVNGFRDRPAGTLRLNVPLSAARLVLPALVPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           +I++++++++  +D+     D  IR  + ++   +I   +          A+P YL    
Sbjct: 121 EIRLEVVVEDGFVDVLAAGCDAGIRYDERLEQD-MIAVPIGPRRQRFATAASPAYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC---LQVNSYLSIMQYC 235
            P   ++L  H  +      P       W    D  I     +    ++V +    ++  
Sbjct: 180 RPEHPRDLLDHACLL--GRFPSGALTAPWEFERDGAIVRVDPTGPLIVRVGASDLAVEAA 237

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V G+GI  L +  ++   D   L  ++E         +  YP        L+AF +F+  
Sbjct: 238 VAGTGIVHLFEDWLRPRLDGGALEPVLEPWWQDFPGPFLYYPGRRHLPAPLRAFVDFVGA 297

Query: 293 KA 294
           +A
Sbjct: 298 QA 299


>gi|328676170|gb|AEB27040.1| Transcriptional regulator [Francisella cf. novicida Fx1]
          Length = 298

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 133/293 (45%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   +    FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT 
Sbjct: 6   NISINLFEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTH 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      + ++++  +   +    +PSG L+I+T+    QN+L   +KE+   +  
Sbjct: 66  EGMLLFNYCKTLQNEIDNIRDLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ ++ K  +   + AD  + +        ++ RK+ T      A+P Y+     P 
Sbjct: 126 VKIEVSIEEKMPNFKSNEADIILGVNW-TPPEDIVARKIATTRYVLCASPAYINKNGSPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L  HN I     +   +         ++   +   S +  N+   I    +   GI
Sbjct: 185 NISDLANHNYIPHKSRVTPLVN-----IKKNKLNPQTLPSNISANNIEFIKACVLNDFGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A   +YIVKD   N  L+ +++D       +Y  YP+      K+K F + + 
Sbjct: 240 AQFHEYIVKDEIRNGQLIELLKDDFLDEQDIYIYYPKNKFVQPKVKEFVSLVI 292


>gi|238894887|ref|YP_002919621.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547203|dbj|BAH63554.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 297

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 124/289 (42%), Gaps = 9/289 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E+  G +L +R  R LTLT  G K+  
Sbjct: 8   QVYLRICELGSLSAAARALGMSRPMVSRYLEQMESWAGARLIHRSTRRLTLTPAGEKVLI 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            T  +    +    E Q +   PSG LR+A        L+   L +FL  YP ++++L +
Sbjct: 68  KTRCLTRIADEIAGERQRA--DPSGTLRVACAHFTAMQLISPLLPDFLARYPLLRLELDI 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N  + +  +  D AIR+    ++ + I R+L        AAP +++      +  +L +
Sbjct: 126 NNHPVSLIGERIDVAIRITDNPEAGA-IARRLGVCRSLLCAAPRWMRQHGPLTTPDDLQR 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN + +        + + +     R         L       +++  V G GIA+LP+  
Sbjct: 185 HNCLLYSHF---ASQHWQFSDAQGREASVAVNGNLSAGISSLLLEAAVAGCGIAMLPELE 241

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +    +  L  ++ +    + +VY  Y         L  F + +  + 
Sbjct: 242 ARSAIASGTLEVVLPEWTPKALSVYGIYLSRDYQPDGLPLFLDALQRRL 290


>gi|161521084|ref|YP_001584511.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345134|gb|ABX18219.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 339

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLT 60
             +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +    G TLT
Sbjct: 30  KLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEASLGTLLFDKSRAEGFTLT 89

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P
Sbjct: 90  AEGQRLVAYADAMETTVQSACDQVAHTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 149

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     + ++   AD A+ L +P +    +  KL    +  YA   YL +    
Sbjct: 150 RVTVDLLPVPHFVSLTKREADLAVTLERP-ERGPYVCTKLCDYQLRLYATRDYLASHPPI 208

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +    E       V         + L+  S ++     + G G
Sbjct: 209 AGTDDLARHTFISYVDDLAFSSELLYLERAVPGA-----TAGLRTTSVIAQSFAALHGGG 263

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+LP +I    P LV ++ D +  +   +    E L+   ++ A  +++   A
Sbjct: 264 LAILPCFIAAAQPALVPVLPDQVVVTRCFWLTCREDLRKLRRVTALWDYLRAAA 317


>gi|317405226|gb|EFV85565.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 305

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 120/301 (39%), Gaps = 7/301 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LR F  +A + S   AA  L ++  ++++++  LE  +G++L  R  RG  LT++
Sbjct: 2   ITTDDLRFFLSLAATSSLAQAARALDVTPPAVTQRLHALEKRLGVRLVNRSGRGTALTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++  +L     EL       +G LR+   +  GQ  + G + EF     ++
Sbjct: 62  GRLLALRAGQICGELNELADELAGRRGVVAGHLRVVAPLGFGQRYVAGLVAEFRQHSDNV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
              L+L +    ++ D  D  + + + ++ S+L+   L        A+P YL     P  
Sbjct: 122 TASLVLSDGPPRLASDDWDVMVHIGE-LRDSTLVAYPLAPNRRILCASPAYLARHGAPAK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H+ I   +   + +  + +       +G      L  N+  + + + + G GI 
Sbjct: 181 PEDLRDHDCIALRE-NEEDVTLWRFKRGRGPVVGVRIAPVLSSNTGATAVAWALAGHGIV 239

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KARDW 297
              ++ V ++     LV ++     P   V            +   F   +     A  W
Sbjct: 240 ARSEWDVAEHVKRRALVPLLPGWSLPEANVVALVKSRQDLPARTAGFLAHLREAFAATPW 299

Query: 298 K 298
           +
Sbjct: 300 R 300


>gi|299769041|ref|YP_003731067.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
 gi|298699129|gb|ADI89694.1| LysR family transcriptional regulator [Acinetobacter sp. DR1]
          Length = 300

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 122/295 (41%), Gaps = 7/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+    +A+ G+F  AA +L +S +++S  IS LE  +G++LF R  R ++LTE G
Sbjct: 5   NLNDLKAVMAIAKRGTFRGAAIELGMSTTALSHAISKLEENLGVRLFNRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        + +    ++     PSG LRI       + ++   + EFL  YP++ 
Sbjct: 65  RLFVEQVGPALQDIHSALDIVRSQRETPSGTLRINAAAFAAREIISPVIIEFLRRYPEMN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+ + K +DI  D  D  IR+   + S  +              +P YL+   +P   
Sbjct: 125 IDLVTEGKLVDIIADGFDLGIRVAHLVPSDMIAVSLGKLQRYVVVGSPEYLERYGKPKIP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  I    +       F+W    +  I +  +   + ++         +   G+ 
Sbjct: 185 TDLFRHKCI---RVRLPDGALFSWKFEKNGEIIQIDVQGPITLDEASLSRATVLENIGLG 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              +  V+   ++  L+ +++D +     +   Y      +  LKAF   +   A
Sbjct: 242 YFMEQDVRAEIESGQLISVLDDWMPCMSGLCLYYSGRRNQSAGLKAFLALVREVA 296


>gi|76818532|ref|YP_337271.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|226194926|ref|ZP_03790517.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254187379|ref|ZP_04893892.1| LysR family regulatory protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|76583005|gb|ABA52479.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|157935060|gb|EDO90730.1| LysR family regulatory protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|225932731|gb|EEH28727.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 339

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 53  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 112

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G   + T        L   L +     P + ++++
Sbjct: 113 AAVRQSLDALRAATADIRSRRA--NGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 170

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   ++AD AI              +L   H+    +P +     +     +L 
Sbjct: 171 TS-QDIDPQREHADVAILFGAG-DWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLL 228

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 229 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 288

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 289 LVDTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 335


>gi|109898628|ref|YP_661883.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109700909|gb|ABG40829.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 302

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 130/289 (44%), Gaps = 10/289 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   LR+F   A+ GS +  A ++ LS + +S  +  LE ++G+ LF R  R L LT++G
Sbjct: 3   NLHDLRIFCETAQQGSLSACARKMDLSPAVVSASLKRLEADLGVLLFIRSTRNLRLTQKG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R   +    L+    ++     + SG ++++   DLG+NLL   L EF+ L+  ++
Sbjct: 63  EQFLRHCIDALSILDEATTQMHSEDTELSGVIQLSAPSDLGRNLLLPWLDEFMTLHQKLE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLS 182
           I+L L +   D+     D A+R  KP + S  I   +   ++    A+P Y++    P +
Sbjct: 123 IRLQLSDSPADLYSQPVDLALRYGKP-KDSGFIAIPVAANNVPVLCASPSYIEQFGSPNT 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
           +QEL +HN +  G           W+   D       ++   Q        ++ + G GI
Sbjct: 182 LQELTQHNCLCHGH---NDTLHSRWVFNKDNKNTSIDVTGNRQCKDGDITRKWAIAGKGI 238

Query: 242 ALLPDY-IVKD--NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAF 286
           A      IV+D     L+ + ++     +F +     E    +  + AF
Sbjct: 239 ARKSQLDIVQDLIQGRLIELDVDGWQGETFPLNLICAERRLLSPTVNAF 287


>gi|148545351|ref|YP_001265453.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148509409|gb|ABQ76269.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 299

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 113/291 (38%), Gaps = 8/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LRVF   AR   FT AA +L  +Q ++S+Q+  LE ++G +LF R  RG+ LTE 
Sbjct: 8   LSLDTLRVFEAAARLRGFTAAALELGTTQPAVSQQVKRLEAQLGTRLFDRIYRGIELTEA 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     +    ++      Q S       L++AT        L   L+ F   YP +
Sbjct: 68  GQVLFEQVHQGLQTMDDGIA--QASGRGQREVLQVATDFAFAAFWLMPRLQRFHQAYPQV 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+   +   +     D A+             R L    +    +PH +    + LS
Sbjct: 126 DVSLVTGERSQGMLRPDIDVAVLFGDGRFHQG-ESRWLFDEEVFPVCSPHLI--HGKALS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +  L+           D+  +         P    L+ ++Y  ++Q  + G G+A
Sbjct: 183 AVALQRLPLLHLKGEQASRWFDWAGVFRGFGVDSPPPAGQLRFDNYTLLIQAAIAGQGVA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   ++V    +   L R +E  +      Y   P   +    ++ F +++
Sbjct: 243 IGWAHLVDGLVEQGLLCRPLEGSLRSERGYYAVLPPRKRRGALIERFVDWL 293


>gi|118590223|ref|ZP_01547626.1| probable transcriptional regulator protein, LysR family protein
           [Stappia aggregata IAM 12614]
 gi|118437195|gb|EAV43833.1| probable transcriptional regulator protein, LysR family protein
           [Stappia aggregata IAM 12614]
          Length = 293

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 135/292 (46%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  +AR+G    AA +L L+ ++++R+++ LE  VG +LF R   G  LTE 
Sbjct: 1   MNWDDIRIFLAIARTGQILAAARRLGLNHATVARRLTSLEDSVGTRLFDRSTSGCLLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+       +  +    + +L   + + +G +RI      G   L   L +    +P +
Sbjct: 61  GSRFFDRAERIEAEAVAAEADLTNDTPEITGTVRIGAPDGFGVAYLAPRLGKLTERHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL+   +   +S   AD A+ + +P ++  L+  KLV   +  YA+  YL+    P  
Sbjct: 121 TVQLVPVPRSFSLSRREADIAVTIDRP-ETGRLVAGKLVDYSLGLYASKTYLERRGTPAI 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H+LI + + +                I +   +  ++ S L   +    G+GI 
Sbjct: 180 ATDLTAHDLIGYVEDLLYSPS-----LNYGTEILKDWTARFEIASALGQTEAVRSGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +L D+I +D+  LV ++ D+       +    E+ +    + A ++F+  + 
Sbjct: 235 ILHDFIARDDSGLVAVLPDIKL-RRAYWMVTHESSRPLRHVAAAQDFLRDQV 285


>gi|116250041|ref|YP_765879.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254689|emb|CAK05763.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 302

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 128/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   V+   SF  AA++L ++ S+IS  IS LE  +G++L  R  R +  TE+G 
Sbjct: 6   LSQLAVLAAVSEHRSFRAAAKELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L         +++     ++++  KP+G LRI         LL   L +FL LYPDI +
Sbjct: 66  LLLERLRPALEEIDIALEAVRDTRAKPAGNLRITAPRFASDLLLAPRLGDFLNLYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  ++   DI  +  D  IRL + +++  +  R    +     A+P Y ++  +P   +
Sbjct: 126 EIANEDGFTDIVKEGFDAGIRLEESLEADMIAVRVSPDLTTVIAASPEYFEHHPKPEHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I            + W    D       +   L V+     +   + G+G+A 
Sbjct: 186 DLVHHRCI---KRRFTNGSIYRWEFEKDGQELVVSVDGPLIVSEDRLALLAALNGAGLAY 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L D  V D      LVR++ED   P    +  YP   +    L+AF +F
Sbjct: 243 LFDMRVYDELAGGTLVRVLEDWCAPYSGPFLYYPTRRQMRPALRAFIDF 291


>gi|313496450|gb|ADR57816.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 299

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 113/291 (38%), Gaps = 8/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LRVF   AR   FT AA +L  +Q ++S+Q+  LE ++G +LF R  RG+ LTE 
Sbjct: 8   LSLDTLRVFEAAARLRGFTAAALELGTTQPAVSQQVKRLEAQLGTRLFDRIYRGIELTEA 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     +    ++    +      +    L++AT        L   L+ F   YP +
Sbjct: 68  GQVLFEQVHQGLQAMDDGIAQSGGRGQRE--VLQVATDFAFAAFWLMPRLQRFHEAYPQV 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+   +   +     D A+             R L    +    +PH +    + LS
Sbjct: 126 DVSLVTGERSQGMLRPDIDVAVLFGDGRFHQG-ESRWLFDEEVFPVCSPHLI--HGKALS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +  L+           D+  +         P    L+ ++Y  ++Q  + G G+A
Sbjct: 183 AVALQRLPLLHLKGEQASRWFDWAGVFRGFGVDSPPPAGQLRFDNYTLLIQAAIAGQGVA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   ++V    +   L R +E  +      Y   P   +    ++ F +++
Sbjct: 243 IGWAHLVDGLVEQGLLCRPLEGSLRSERGYYAVLPPRKRRGALIERFVDWL 293


>gi|83955961|ref|ZP_00964472.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83839725|gb|EAP78903.1| transcriptional regulator, LysR family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 298

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 127/288 (44%), Gaps = 11/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  +   G F  +A +  +S S++SR ++ LE ++ + L  R  R + +T +G+ +
Sbjct: 12  DLAAFVGIVDDGGFAESARRRGVSASTLSRSVTRLEEQLKVTLLRRTTRSIEITPEGAAV 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                E+  + ET Q E+  S   P+G LR+   +    ++L   L EF   YP IQ+ +
Sbjct: 72  LAEAREILDRSETLQ-EIATSGQAPAGPLRVNAPVPYVLHVLAPRLAEFRAEYPGIQLSI 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + +  +D+   +AD AIRL + +  S ++ R L        AAP YL     P +  +L
Sbjct: 131 DMTDALVDLIGSHADVAIRLGQ-LPDSDMLHRPLGRTAWKLVAAPEYLDRNGWPQTPTDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            K   + F          F  L+T   P+  P    +   +  ++ Q  + G GIA   D
Sbjct: 190 AKLEQVRFAAPDHINTLRFAGLST---PVTVP--PAVTAGNGEAVRQMVLGGLGIARFSD 244

Query: 247 YIVKDN---PNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++ D+     LV +    +      +   Y   +    +L  F +++
Sbjct: 245 FMIADDIDAGRLVELFPGQLDAAPLDISALYLTRVSGLRRLGVFLDWL 292


>gi|307317489|ref|ZP_07596929.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306897078|gb|EFN27824.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 324

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 128/289 (44%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  V R G F  AA    +S S+IS+ IS LE  +GI+L  R  R +  TE G 
Sbjct: 28  LDSLEIFEDVVRCGGFRAAALGRGVSSSAISQSISVLEEALGIRLLNRTTRSVAPTEAGE 87

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L        +++ T   +L +   +PSG +RI        ++L     EF+ +YPD+ +
Sbjct: 88  QLLERLRPALYEIRTAVDDLNQLRERPSGTVRINAPGPAADHVLCPLTFEFMKIYPDVNV 147

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++ D   IDI     D  +R    +    +       +     A+P YL+    P S +
Sbjct: 148 EIVSDAAIIDIVEQGFDAGVRFGNQLAQDMIAMPLGPALRYAIVASPDYLRKRGRPHSPR 207

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ I         M  + +    D     P+   L ++S    +Q  + GSGIA L
Sbjct: 208 DLLQHDCIR-RRFPGGTMVTWKFARDGDEVEITPK-GRLTLSSAHQELQAALAGSGIAHL 265

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  V+D+     LV ++ D      + Y  YP     +  ++AF  +I
Sbjct: 266 FEDYVRDDVEQGRLVELLCDWKQKLPSWYLYYPSRRHTSAAMRAFLEYI 314


>gi|113866151|ref|YP_724640.1| DNA-binding transcriptional activator GcvA [Ralstonia eutropha H16]
 gi|113524927|emb|CAJ91272.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 318

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 121/297 (40%), Gaps = 13/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LR F   AR  SF+ AA +L ++  ++S QI  LE E+G+ LF RH + + LT  G 
Sbjct: 25  LTALRAFEAAARHESFSRAATELFVTHGAVSHQIRALEDELGMPLFERHGKRVALTPSGR 84

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +   ++      LQ  +     +L I+T        L   +  F+  +P++ +
Sbjct: 85  LYAERVRDALLQIADATRALQAGNRDK--RLTISTMPSFAARWLTPRIGSFIERHPELDV 142

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N  ++ + +  D A+R+        L   +L+        +P +    R P   Q
Sbjct: 143 ELLSSNTLVNFAHEEVDIALRMGSG-DYPGLYVERLLDDVFFPVCSPGF-NGGRLPERPQ 200

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++    L+       +      W         EPR   L       ++Q    G GIAL+
Sbjct: 201 DMAGLPLLR-----GEGDPWKPWFEAAGLDWPEPRKGLLLE-DSSLLLQAASEGQGIALI 254

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +  ++     +VR+ +  I   + +YF       N  K++AFR ++  +   ++
Sbjct: 255 RSSLAYNDLLAGRVVRLFDVSIPCPWLLYFVCAPGSLNLPKVQAFRGWLLPEIERFR 311


>gi|85059934|ref|YP_455636.1| DNA-binding transcriptional activator GcvA [Sodalis glossinidius
           str. 'morsitans']
 gi|84780454|dbj|BAE75231.1| transcriptional regulator [Sodalis glossinidius str. 'morsitans']
          Length = 318

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 119/293 (40%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AA++L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  L     +LQ  S    G L ++         L   L  F   +P I +
Sbjct: 68  IYYLDIKEIFSVLAEATRKLQSRSA--KGALTVSLLPSFAIQWLVPRLSSFNAAWPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +++ D   D  D AI   +      L   KL   ++    AP          +  
Sbjct: 126 LIQAVDREEDKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCAPALFTGVYPLKTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          E   +   +       +   +  +    ++Q  + G G+AL 
Sbjct: 185 DLIHHTLLHDASR----REWLAYSRQLGLSQLNVQQGPI-FSHSAMVLQAAIHGQGVALA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + + +   +   L     DV+      Y    ++    GK+ AFR +I  +A
Sbjct: 240 NNVMAQTEIEAGRLACPFNDVLESKNAFYLVCHDSQSEVGKIAAFRQWILARA 292


>gi|28900374|ref|NP_800029.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362094|ref|ZP_05775090.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
 gi|260877328|ref|ZP_05889683.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260898365|ref|ZP_05906861.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260902902|ref|ZP_05911297.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28808685|dbj|BAC61862.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085082|gb|EFO34777.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308090523|gb|EFO40218.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308107919|gb|EFO45459.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308113815|gb|EFO51355.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           K5030]
          Length = 295

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 138/301 (45%), Gaps = 17/301 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVQSYIRVIEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLILD--NKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I +QL      +  ++S+   D  I R  + + S S     L       YAAP YL+   
Sbjct: 121 ITLQLTTTLPGQLPELSL---DLFISRHLEQLNSLSFKATPLFEHKAQFYAAPSYLEKYG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P +++EL KHN++ +G+   + ++        +R             +  ++      G
Sbjct: 178 TPQNVEELTKHNILIWGEKPAREIK-------TNRGKRMSLSGNFATTNPEALFHGAKRG 230

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI +  + ++KD+     LV I+ DV     TVY  YP+      + + F +++  +  
Sbjct: 231 MGILMTNNVMIKDDLKSGALVPILPDVTADEATVYAYYPKLDYQHTRTQLFLDYLKSRLE 290

Query: 296 D 296
           +
Sbjct: 291 E 291


>gi|288960176|ref|YP_003450516.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912484|dbj|BAI73972.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 306

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 139/296 (46%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F  V   GSFT AA  L +S S++S+ I  LE  +G+ L  R  R LTLT +G 
Sbjct: 10  LTGLIAFARVGSLGSFTAAARSLSVSPSAVSKSIQRLEQTLGLSLISRTTRSLTLTPEGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L+     +  + +  +   + +S +PSG LR+A ++ +G +++   L EF  +YP + I
Sbjct: 70  ELYERALRLLREADEIEQVAKAASSEPSGPLRVAASLPIGIHMIAPALPEFRRIYPRVTI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+++ +DI     D A+R+ + +  S L+  +L    +  +A+P YL     P    
Sbjct: 130 DLRLNDQFVDIVEAGIDIAVRIGE-LADSRLLSCRLAPHRLCCFASPAYLAARGTPAHPD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVD-RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I+           F W   +  R I       + V++  +++   + G GI +
Sbjct: 189 DLARHETISL--RFQSSGLPFRWPFNLGNREIELLPPPGIIVDASEALIAILIAGGGIGI 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             D+I   +     LV ++ D      T+   +PE+ +    ++AF   +    R+
Sbjct: 247 GADFIAAPHIARGELVPVLSDYAVERHTITAVWPESRRANPAVRAFLAHLQRSFRN 302


>gi|145299300|ref|YP_001142141.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852072|gb|ABO90393.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 301

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 138/286 (48%), Gaps = 9/286 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +  +F  V  +GS T AA+ L ++ S++S+ IS LE+ +G+ L +R AR L LTE G 
Sbjct: 4   LRRYAIFAAVVEAGSMTGAAKALGMTPSAVSQHISQLESLLGLTLLHRSARRLNLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            + +    +   L  T++ L E      G++RI   + +    L   L   L  +P + I
Sbjct: 64  VVWQGCQSLQQTLNQTELRLSEVRDSLLGEVRITAPVGMAGQPLARALSPLLQAHPGLCI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+I D++  D+  +  D A+R+   +  SSL+ RKL    M   A+P YL     P S  
Sbjct: 124 QIIADDEKRDLIAERIDVALRVG-TLSDSSLVARKLGQTRMLLCASPAYLARKGTPRSPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ +   D++   +  F+      +   +PR+ C   N+ L + Q+ + G G++L 
Sbjct: 183 DLLEHDWLA-ADMLSGGLTFFDDKGQGHKVKPKPRVVC---NNVLPLRQFTLAGQGVSLQ 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           P+  + ++     L+ ++     P   ++   P+  +   K++   
Sbjct: 239 PEGEIAEDLAQGRLLELLPGFRVPPMEIHAITPQ-REIPEKVRRVI 283


>gi|21244755|ref|NP_644337.1| LysR family transcriptional regulator [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21110450|gb|AAM38873.1| transcriptional regulator lysR family [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 304

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 120/285 (42%), Gaps = 6/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+  R F  V   GS + AA  L L+Q +I R ++ LE  + + LF R   GL  T+
Sbjct: 4   TISWELYRSFLAVLEEGSLSAAARALGLTQPTIGRHVAALEDLLAVPLFVRSQTGLLPTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +       Q           G +RI+ +  +G  +L   L      +P 
Sbjct: 64  AAQALRSHARAMADIAAALQRAASRHGEAVQGTVRISASEVVGAEILPPILAALRAAHPQ 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+L N+  D+    AD A+R+ +P Q   L+ R++  + +  +A P Y+     P 
Sbjct: 124 LRMELVLSNRVQDLLHRQADVAVRMIRPQQD-LLVARRVGKVAIGLHAHPDYVDRHGLPQ 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H L+ F    P     F   A    P  EP    L+ +S L+ +     G GI
Sbjct: 183 RPEDLAQHALVGFDTDTP-----FLRGARKGFPFWEPAAFALRADSDLAQLALIRAGCGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
                 + +  P L+ ++   +  +  V+    + L+ +    A 
Sbjct: 238 GFCQAMLARRTPGLLPVLPQQVGVALDVWVTMHQDLRASAACSAV 282


>gi|229515758|ref|ZP_04405217.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
 gi|229347527|gb|EEO12487.1| transcriptional regulator LysR family [Vibrio cholerae TMA 21]
          Length = 316

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 136/298 (45%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S   D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R+++ L LT
Sbjct: 10  LSMKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L    +E++ ++E  Q E++++     G++ I+  +   ++ L     EF  L+P
Sbjct: 70  KEGEQLFHSYAELFAQIERKQEEVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--- 177
           ++ +++ + +     S    D A+R   P   S  + RKL        A+          
Sbjct: 130 NVTLRMQVGSGLDYFSQRDLDIALRFG-PQPESDWVARKLARNPSVLCASAELAAKLSTV 188

Query: 178 -REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                  ++L +H L++    +P      N    V + +     + L  +   +I+Q  +
Sbjct: 189 TPALAHPEQLKEHPLLSLNHKLPWIFHHHN----VAQKVQFIPTARLCSDELDTIVQATL 244

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G GIA LP  +++    +  L+ ++ +       VY  +P+      + +A  ++I 
Sbjct: 245 QGMGIARLPRGLMEPLLRSGQLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDYIM 302


>gi|255610707|ref|XP_002539231.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
 gi|223507948|gb|EEF23153.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
          Length = 241

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 108/231 (46%), Gaps = 5/231 (2%)

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +R   ++  ++E   + +Q     PSG LRI   +  G   L   L +F+  YP++
Sbjct: 2   GQAYYRRCVQILDQVEDATLMVQHHQSHPSGLLRINAPMVFGTMELGKWLPDFMRRYPEL 61

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L+ +++ +D+  +  D  +R+ + +  S+L+ ++L    M   AAP YL+    P +
Sbjct: 62  KIDLVCNDRFVDLIAEEFDVGLRITRTLPDSTLMAKRLSVSDMVLVAAPDYLRRHGIPST 121

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +HN + +   +     +  +       +       LQ N+ + +      G GI 
Sbjct: 122 PADLMQHNYLAYSLALQTT--ELTFTDARGALVSVDVRGNLQANTGIVVCDAVRAGMGIT 179

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               ++V ++    +LV+++ D    +  +Y  YP+    + K++AF +F+
Sbjct: 180 ASASFVVHEDLRRGDLVKLLPDYQLQARELYALYPQNRHMSPKVRAFIDFV 230


>gi|254237726|ref|ZP_04931049.1| hypothetical protein PACG_03814 [Pseudomonas aeruginosa C3719]
 gi|126169657|gb|EAZ55168.1| hypothetical protein PACG_03814 [Pseudomonas aeruginosa C3719]
          Length = 304

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 117/298 (39%), Gaps = 6/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D LRVF   AR  SFT AAE+L  +Q ++S+QI  LE E+   LF R  RG+ LT
Sbjct: 6   MPLCLDLLRVFESAARQLSFTAAAEELGTTQPAVSQQIKRLEKELATPLFQRVHRGIVLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L R  +     ++     L          L++AT        L   L  F   +P
Sbjct: 66  DAGQLLLRHVAAGLETIDAGIAALGARQRHE--VLQVATDYAFAAYWLMPRLPRFHQAHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+   + +       D AI              +L    +    +P  ++  + P
Sbjct: 124 HLDVSLVTSERGLAGQRGDIDVAILFGDGRSKHG-EAHRLFREEVFPVCSPRLVEGLQLP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+   L +  ++           D+  L        +P  + L  ++Y  ++Q  + G G
Sbjct: 183 LAKVHLARLPMLHLKPAQHARWFDWPALFEALAIDRQPIPAVLSFDNYTLLIQAAIAGQG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A+   ++V    +   L R + +     +  Y   PE  +    +  F +++  + +
Sbjct: 243 VAIGWRHLVDGLLEQGLLCRPIGESCLSRYGYYAVLPERKRRQRLVDGFVDWLQAELQ 300


>gi|172059783|ref|YP_001807435.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171992300|gb|ACB63219.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 328

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 119/291 (40%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE+ +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEQQSFRRAAHHLGVSNALVTRSIAMLESHLNTRLIHRTTRNLSLTEAGLRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  +  +P+G LR+  +  L    L   +  F   YP++++QL 
Sbjct: 67  DGCRALLEEFDHLEASVAHAVREPAGTLRVVASSLLSPLALTPLVSSFRHRYPELRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  I     +  + +LI   L +    A AAP YL+   EP +  +L
Sbjct: 127 VAEGPLDVLDSGYDVGIVTGNRLDGNPTLIGHALPSAPFVACAAPAYLERRGEPRAPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +       +    +  +                VN    +    V GSGI +LP+
Sbjct: 187 PGHDWVALAP--HQHAPAWRLVGHDGATHSITVRPTCTVNQLALVHAAAVAGSGIVVLPE 244

Query: 247 YIVKDN---PNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             V D      LVR++       P   +   YP       + ++F      
Sbjct: 245 PCVADALATGTLVRLLPAYQIDDPDAQLSLVYPNRQYVPARTRSFIEHALE 295


>gi|171317055|ref|ZP_02906259.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097756|gb|EDT42580.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 307

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 113/292 (38%), Gaps = 7/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L +F  VA  GSFT AA ++ L     S  I  LE E+ I+LF R  R L LT +G  
Sbjct: 5   DDLALFVRVAALGSFTRAAREVDLLPGQASAAIQRLERELDIRLFARSTRSLRLTTEGEH 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 EV   L+  +  L     +  G L+IA   DLG+N+L   + EF   +  + ++
Sbjct: 65  YLPYAREVIDTLDDGRERLNADRNELRGVLQIAAPSDLGRNVLLPWITEFRQTHQKLSVR 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQ 184
           L+L +   DI  D  D AIR   P++ +S I   L         A+P YL     P  I 
Sbjct: 125 LLLSDCMTDIFQDPVDIAIRYG-PVEDASYICMPLAPDNRRVLVASPSYLDRHGRPEKID 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +    L+     D       D             +      ++ + G GIA  
Sbjct: 184 DLQNHQCLRL--LLSGRSNDRWSFPDGDSWRKVKVDGNYLCDDTDIAHRWAIAGQGIAYK 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               V  +     L  ++ D       + F  P   +    ++     +  K
Sbjct: 242 SWIDVCGDVNGGRLEVLLPDQPGEPAPLNFICPHRKQFLPAVRLLHTLLQEK 293


>gi|46143679|ref|ZP_00134752.2| COG0583: Transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126207619|ref|YP_001052844.1| DNA-binding transcriptional activator GcvA [Actinobacillus
           pleuropneumoniae L20]
 gi|165975587|ref|YP_001651180.1| DNA-binding transcriptional activator GcvA [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303251955|ref|ZP_07338126.1| DNA-binding transcriptional activator GcvA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307244939|ref|ZP_07527036.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247114|ref|ZP_07529166.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249335|ref|ZP_07531329.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307253893|ref|ZP_07535745.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256156|ref|ZP_07537943.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307260588|ref|ZP_07542280.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|126096411|gb|ABN73239.1| glycine cleavage system transcriptional activator-like protein
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|165875688|gb|ABY68736.1| glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649385|gb|EFL79570.1| DNA-binding transcriptional activator GcvA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854104|gb|EFM86312.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306856363|gb|EFM88514.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858629|gb|EFM90691.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306863097|gb|EFM95039.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865337|gb|EFM97233.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306869665|gb|EFN01450.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 296

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 14/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  +FT AA+ L ++Q+++S QI  LE  +G+ LF+R  R L LTE G+
Sbjct: 8   LNALKAFESAARHLNFTKAADDLFVTQAAVSHQIKLLEDFLGVSLFHRRNRLLELTEIGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  ++     +++  + +    L I+TT   G + L   L +F   YPDI++
Sbjct: 68  QYFEEIQPLLEQIAVATEKVKLKNSRQI--LSISTTPSFGMHWLVPRLNKFHKKYPDIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           +L   ++D  +     D AI         +L   +LV   +   A+P YL++   P++  
Sbjct: 126 RLTTASQDEGLLGKDIDVAIYYGSG-NWQNLEAIELVQARIMILASPEYLRDH--PITKP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L+  NLI     +    +       ++    E     +  N+ + + Q    G G+ +
Sbjct: 183 EDLEGKNLIH----VCSHTKWKQMAEHLNLNNLEVESGPMYSNTSMGM-QAAKHGQGVVV 237

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKAR 295
               + ++      ++E   T  +     Y  YP  +    K+K F  +I  + +
Sbjct: 238 ANRILAQNAIEEGSVIEAFTTDVYDEKAFYVVYPPQMAEIAKVKHFVEWITHEIK 292


>gi|237810654|ref|YP_002895105.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|237506868|gb|ACQ99186.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 300

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 136/299 (45%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +  +L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVVFENRIEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPGFAATHGMPTE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    +IT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLE--PTLISENFLFLRQAILAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++PDY+V D+      V  ++      F   +Y  Y     +T     F +F+  +AR+
Sbjct: 237 IVPDYVVHDDVRRGAAVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEEARN 295


>gi|146341482|ref|YP_001206530.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146194288|emb|CAL78310.1| putative transcriptional regulator, LysR family [Bradyrhizobium sp.
           ORS278]
          Length = 301

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 128/296 (43%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  LR F  V R GS + AA    L+Q ++ R I  LE  +G+ LF R   GL  TE  
Sbjct: 6   DWSLLRSFLAVVRRGSLSAAARATGLTQPTVGRHIDELEAGLGVALFTRSQAGLLPTESA 65

Query: 64  SKLHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           + L      +           +    + +P G +RI+ +  +G  +L   L      +P+
Sbjct: 66  TALLPHAEAMEAAFAALVRTAKTGGDAQQPRGVVRISASEIVGTFVLPPILAGIRHRFPE 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L+L+N+  D+    AD A+R+ +P Q   L+ R++ ++ +  YA   Y+     P 
Sbjct: 126 IVIELVLNNRTDDLLRRDADIAVRMIRPKQD-GLVARRIGSVPLGLYAHRDYVARFGLPD 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I++L  H++I F           +    + R +        + +S ++ +     G GI
Sbjct: 185 TIEQLGAHHIIGFDRDDHSARSVASSQLPISRELF-----SYRTDSDVAQVTAIEAGLGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             +   + + NP L+ ++   I      +    E  K++  ++   + +      W
Sbjct: 240 GGMQKAMARRNPALLPVLAGQIAFELDCWLAVHEDQKDSPPIRVMVDGLAEGLARW 295


>gi|262192854|ref|YP_001079366.2| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|261835013|gb|ABO03324.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
          Length = 320

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 16  NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 76  NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 135

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 136 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAVPRHP 194

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 195 DDLPGSHWIGHGGLANLS---YSVFGNEGRSVRIQPPGRLKVKSVLLAHQMALAGAGISA 251

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 252 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 298


>gi|332162977|ref|YP_004299554.1| LysR family regulatory protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604199|emb|CBY25697.1| transcriptional regulator, LysR family [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667207|gb|ADZ43851.1| LysR family regulatory protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862269|emb|CBX72430.1| uncharacterized HTH-type transcriptional regulator yafC [Yersinia
           enterocolitica W22703]
          Length = 307

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 140/300 (46%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLTHARQILGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMISGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRIGA-LRDSTIHARLLGASRVRILASPDYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +I +L  H+L+ F        E  N  +    P G   I+  L  +S  ++    + G 
Sbjct: 180 HTIDDLANHSLLGFTQP-----EFLNQWSLPHLPGGRTSITPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI  L D++ +++     LV +M D I  ++  +   Y    +   ++  F +++  + +
Sbjct: 235 GIVELSDFMTREDQLAGRLVEVMADQILETWQPINAVYYRNTQLAARITCFLDYVSEQIK 294


>gi|288961611|ref|YP_003451921.1| hypothetical protein AZL_c00840 [Azospirillum sp. B510]
 gi|288913891|dbj|BAI75377.1| hypothetical protein AZL_c00840 [Azospirillum sp. B510]
          Length = 297

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 109/298 (36%), Gaps = 16/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     L  F   AR+GSFT AA +L L+Q ++SRQI  LE ++G  LF R  + +TLT
Sbjct: 11  MSM----LTAFEAAARTGSFTAAAAELSLTQGAVSRQIKALEDQIGTALFIRKGQRVTLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+       +   ++    +    +     G L +A     G   L   L  F   +P
Sbjct: 67  PTGALYADPIRDALRQIAAATVRTIAAPK--GGVLNLAILPTFGTRWLVPRLPAFQSAHP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I         D  +   D AI           +   L+   +    +P +L      
Sbjct: 125 QVTIHFTTKLAPFDFRLHDLDAAIHYGFG-DWPDAVCDHLLDEEVLPVCSPAFLAAHPV- 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L    L+          E         RP      + +    + +  Q    G G
Sbjct: 183 AEPADLLSLPLLHTSTRADAWNEWLAAQGLAPRPG-----AGMVFEQFATTAQAAEAGLG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +ALLP  +V+    +  LV  M+     +   +  +P    N     AFR ++  +AR
Sbjct: 238 VALLPTLLVRGELADGALVPAMDRPHRSARAYHLVHPRGKANHPPFAAFRQWLLAEAR 295


>gi|186469884|gb|ACC85593.1| probable transcription regulator protein [Sinorhizobium fredii]
          Length = 297

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 123/294 (41%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LET++G+ LF R  + + L++ G
Sbjct: 10  DVTTLQAFECAARHGSFTQAAAELNLTQSAVSRQIKDLETQLGVLLFERVRQRVILSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + H+ E   +    S+   S  L IA+    G   L   L +FL  YP   
Sbjct: 70  QKFLPEVRRLLHQTEELMVRAMASARADS-SLSIASLPTFGSRWLVPRLPDFLRRYPGTV 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   +   D      D AI   +P+ + +     L +  +   A+P  L      +  
Sbjct: 129 LNLASRSAPFDFDEQNFDLAIHYGQPVWARATCSY-LCSEIIVPVASPALLAANSVEV-P 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++    L+          + F+     +           + + +  +++    G G AL
Sbjct: 187 EDIGGGPLLHLATRAKLWAQWFD----ANGVDNHGAYRGNRFDQFSMVIEAATAGLGFAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++       L  +++  +    + Y   PE        +AFR +I  + 
Sbjct: 243 LPRYLIEQELTAGTLRIVLDRPMQTENSYYLVVPEGKLENPISRAFREWISEQV 296


>gi|78059645|ref|YP_366220.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964195|gb|ABB05576.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 301

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 121/289 (41%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF RH R + LT+ G 
Sbjct: 8   LNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGRPLFERHNRRVELTDSGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++     +    + +    LR++         L   L  F + +P I++
Sbjct: 68  AYLAEVGASFDRIALATAQHFGHAQQR--VLRVSAPATFSLRWLVPKLSSFQVAHPAIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ ID   D  D  +R   P      +  + ++       AP  L+  R   +  
Sbjct: 126 RLSTSNEPIDKLRDKVDLIVR-GGPQAIDGYVAEEFLSEVRLPVCAPKLLEG-RPLHTPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WLA   +P   PR S L +  +   +Q  + G G+A+ 
Sbjct: 184 DLAGFTLLHAATYPGMWPE---WLAAAGQPNLVPRHS-LTLEHFYLTLQGALDGLGVAMG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V D+     LV+   +   P +  +     A  N   ++AF+ ++
Sbjct: 240 PIALVADDIAEGRLVQPFSEPALPPWRYFTYVASARANDEAVRAFKEWL 288


>gi|309779214|ref|ZP_07673977.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308922018|gb|EFP67652.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 301

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 117/290 (40%), Gaps = 6/290 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   LR    +  +GS    A  L L+ S++S+++  LE ++G +L  R AR L  T++G
Sbjct: 3   DSADLRFLLTIQDNGSLVATARALDLTPSAVSQRLQQLEKKLGTRLVDRTARSLRFTQEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    +E+  +L+    +L        G L++   +  G+  +   + +F   +PD+ 
Sbjct: 63  ALLCERGAELIRQLDALAEDLHTRRGGLVGTLKVNAPLGFGRRYVAPVIADFQQQHPDVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L +  +  + D  D  + +   +Q S+L+   +        A+P ++K    P + 
Sbjct: 123 IELALSDAPLVEAADRFDVVVHIGA-LQVSNLVGHAIAPNARFVCASPAFVKRFGLPETP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L     I   +                R +  PR   L  N    I Q+   G G+ L
Sbjct: 182 DDLAALPCIVLRENKEDVSLWHFSKGRTSRSVRVPR--PLICNDGDVIRQWACEGRGVIL 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             ++ V D+     LVR++     P   V            + + F   +
Sbjct: 240 RSEWDVADDLRAGRLVRLLPGWKAPDANVIALTHNRAGLPQRTRHFMQAL 289


>gi|222082654|ref|YP_002542019.1| transcriptional regulator protein (activator) [Agrobacterium
           radiobacter K84]
 gi|221727333|gb|ACM30422.1| transcriptional regulator protein (activator) [Agrobacterium
           radiobacter K84]
          Length = 334

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 116/296 (39%), Gaps = 13/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +  RVF   AR GSFT AA++L ++QS++S+QI  +E  + ++LF R  R + LT +G+
Sbjct: 46  LNLFRVFEAAARHGSFTAAADELCVTQSAVSQQIRQIEDLLDVRLFRRLPRRVELTREGT 105

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L     E    L      + +        L I     +    L   LK F+ L P I++
Sbjct: 106 QLASAVHESLALLARACERIVDPMAPT--VLCINAPPAIASRWLVPRLKRFMQLNPQIKV 163

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+  N  ++      D AIR  +          +L    +    +P  L+     +S  
Sbjct: 164 TLLASNDTVNFDRQDIDVAIRWGRG-DWQGARVERLGPDKLFPVCSPSVLREGPPIVSPG 222

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H L+              W AT    +G       L  N    ++   V G GIAL
Sbjct: 223 DLAHHTLL----QNMNSSLWATWFATAG--VGSVNFDETLYFNDAGLLLDAAVQGQGIAL 276

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               +V+++     L+R     I    + +            +  FR +I  +  +
Sbjct: 277 ANHMLVENDLKTGRLIRPFNIEIQSGESYHILTSPDFSEKAAVAEFRQWIRAEGAE 332


>gi|206576577|ref|YP_002237579.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206565635|gb|ACI07411.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 318

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+    S+T AAE+L +S+S+IS++IS LE   G  L +R  R ++L+E G 
Sbjct: 10  WAHLYWLTVLEEQKSYTRAAEKLGISKSAISQKISELERVTGKTLVHRTTRSVSLSEDGL 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    +E + +L        +      G LR+   +   +  L   +  FL  +P + +
Sbjct: 70  RLVAELNEPFSQLRDIFTVACDEGGPLRGTLRLTAPVAFSRQQLVPAIAPFLHQHPQLHL 129

Query: 125 QLILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QL + ++ + ++ +  D AIR   R+ +  +  +   L        A+  Y++    P +
Sbjct: 130 QLEVTDRLVSLASEGFDLAIRHCRREALPDTH-VAWPLCHTATLIVASADYIRRHGRPET 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  +T+     +    F      D  +          N+  S+    + G G+A
Sbjct: 189 PDDLRHHQCLTYPRGPQRPQWTFASRQAPDERVTINVQGPFATNNSESLRDAVLAGLGVA 248

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFL 292
           LLPD+  ++      +  ++            +Y   P   + +  ++ F  ++  
Sbjct: 249 LLPDFSAREAIGRGLVQELLPAWQPVEVFADKLYVIRPYTPRVSRAVETFSRYLKA 304


>gi|254372082|ref|ZP_04987575.1| transcription regulator [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151569813|gb|EDN35467.1| transcription regulator [Francisella novicida GA99-3549]
          Length = 299

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +        FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT 
Sbjct: 8   NISISLFETFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTH 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      + ++++  +   +    +PSG L+I+TT    QN+L   +KE+   +  
Sbjct: 68  EGMLLFNYCKTLQNEIDNIRDLAESFHKEPSGTLKISTTSFFAQNILINLIKEYSKKFSK 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ ++ K  +   + AD  + +        ++ RK+ T      A+P Y+     P 
Sbjct: 128 VKIEVSIEEKMPNFKSNEADIILGVNW-TPPEDIVARKIATTRYVLCASPAYINKNGSPS 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L  HN I     +   +         ++   +   S +  N+   I    +   GI
Sbjct: 187 NISDLANHNYIPHKSRVTPLVN-----IKKNKLNPQTLPSNISANNIEFIKACVLNDFGI 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A   +YIVKD   N  L+ +++D       +Y  YP+      K+K F N + 
Sbjct: 242 AQFHEYIVKDEIRNGQLIELLKDDFLDEQDIYIYYPKNKFVQPKVKEFVNLVI 294


>gi|77360007|ref|YP_339582.1| DNA-binding transcriptional activator GcvA [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874918|emb|CAI86139.1| transcriptional regulator (postitive) of cleavage of glycine (LysR
           family) [Pseudoalteromonas haloplanktis TAC125]
          Length = 298

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 126/299 (42%), Gaps = 14/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AAE+L+++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALKAFEAAARHLSFTKAAEELYVTQAAVSHQIKTLEEHLGLKLFIRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L     +L        G L ++ T       L   L  F  L+P+I +
Sbjct: 68  GYFLDIKEIFTQLIDATEKLLARGA--KGSLTVSLTPSFAIQWLVPRLSLFNELHPEIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D +   D  D AI   +    S +   KL T ++    +P  L   +      
Sbjct: 126 RIKAQDLDENSLTDDVDVAIYYGRG-HWSGVQTFKLHTEYLVPLCSPLLLNGIKPLNQPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   D   K  +   W+ T      +     +  +    ++Q  V G G+A+ 
Sbjct: 185 DLAHHTLLH--DTTRKNWK--TWMKTAGVRNVQVNQGPI-FSHSSMVLQAAVHGQGVAIG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF---IFLKARDW 297
              + K   D   LV      +      Y    E+    GK+ +F+ +   +  + +++
Sbjct: 240 NSVLAKPDIDAGRLVIPFNHSLESKNAYYLVLRESQTEMGKIVSFKEWMLSLVEQEQEY 298


>gi|330010664|ref|ZP_08306877.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328534401|gb|EGF61000.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 297

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 124/289 (42%), Gaps = 9/289 (3%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E+  G +L +R  R LTLT  G K+  
Sbjct: 8   QVYLRICELGSLSAAARALGMSRPMVSRYLEQMESWAGARLIHRSTRRLTLTPAGEKVLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            T  +    +    E Q +   PSG LR+A        L+   L +FL  YP ++++L +
Sbjct: 68  KTRGLTRIADEIAGERQRA--DPSGTLRVACAHFTAMQLISPLLPDFLARYPLLRLELDI 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N  + +  +  D AIR+    ++ + I R+L        AAP +++      +  +L +
Sbjct: 126 NNHPVSLIGERIDVAIRITDNPEAGA-IARRLGVCRSLLCAAPGWMRQHGPLTTPDDLQR 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN + +        + + +     R         L       +++  V G GIA+LP+  
Sbjct: 185 HNCLLYSHF---ASQHWQFSDAQGREASVAVDGNLSAGISSLLLEAAVAGCGIAMLPELE 241

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +    +  L  ++ +    + +VY  Y         L  F + +  + 
Sbjct: 242 ARGAIASGTLEVVLPEWTPKALSVYGIYLSRDYQPDGLPLFLDALQRRL 290


>gi|238561297|ref|ZP_00442128.2| putative HTH-type transcriptional regulator YhjC [Burkholderia
           mallei GB8 horse 4]
 gi|238524723|gb|EEP88154.1| putative HTH-type transcriptional regulator YhjC [Burkholderia
           mallei GB8 horse 4]
          Length = 267

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 3/241 (1%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D  D  RVF  V    +FT AA+ L + +SS+S  I  LE  VG +L +R  R +T T
Sbjct: 28  PMDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPT 87

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ L+     +   +E  +   + S V PSG LR+     +G+ ++   L EFL  YP
Sbjct: 88  QDGAALYERCLRLIADVEEAENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYP 147

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L + ++ +++  +  DC +R+   +  S L+ R +  + +   A+P YL     P
Sbjct: 148 QISVELGVTDRAVNLIEERVDCVLRVG-TLSDSGLVARAIGDLPLINVASPAYLARHGVP 206

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L++H  + +       +  + W+   +      R + + VNS  + +  C+ G G
Sbjct: 207 RTPADLERHRPVNYASPSNGRVAPWEWVEGDEVKRVALR-ARVTVNSAEAYIACCLAGLG 265

Query: 241 I 241
           +
Sbjct: 266 L 266


>gi|13472289|ref|NP_103856.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023034|dbj|BAB49642.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 301

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 115/291 (39%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L    +VAR G F  AA +L +S +++S  +  LE  +G++LF R  R ++LTE G
Sbjct: 5   SLTELDAVLMVARRGKFRTAALELGVSTTALSNAVGKLERTLGVRLFNRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     +     +       +     PSG LRI       + +    +  FL ++P + 
Sbjct: 65  QQFVAQVAPAVRDIHEAMEVARSRQATPSGTLRINAFPTAAREIFSWLVLPFLQVHPQVH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLS 182
           I ++ + + +DI     D  +R    +    +I   L           P YLK    P+ 
Sbjct: 125 IDIVTEGRLVDIVAGGFDLGVRSSDLVPVD-MIALPLGVARRNVVVGTPSYLKAHGTPVI 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
            Q+L +H+ +    +       + W    D       +   + ++         +   G+
Sbjct: 184 PQDLAEHSCL---RVRLPNGAIYRWPFEKDGQSVHIDVEGAVTLDEASLARTAALASVGL 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            L  +  V+D+     LVR++ED       +   YP     T   KAF +F
Sbjct: 241 TLAMESDVRDDIEAGRLVRVLEDWTPTLSPLSLYYPSRRNPTAAFKAFVDF 291


>gi|237507737|ref|ZP_04520452.1| putative choline sulfate-utilization transcription factor
           [Burkholderia pseudomallei MSHR346]
 gi|234999942|gb|EEP49366.1| putative choline sulfate-utilization transcription factor
           [Burkholderia pseudomallei MSHR346]
          Length = 339

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 53  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGTRLF 112

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G   + T        L   L +     P + ++++
Sbjct: 113 AAVRQSLDALRAATADIRSRRA--NGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 170

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   ++AD AI              +L   H+    +P +     +     +L 
Sbjct: 171 TS-QDIDPQREHADVAILFGAG-DWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLL 228

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 229 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 288

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 289 LVDTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 335


>gi|182678278|ref|YP_001832424.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634161|gb|ACB94935.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 310

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 126/294 (42%), Gaps = 6/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +  F  V   GSF  AA QL +  +++SR++  LE  +GI+L  R  R + +TE G 
Sbjct: 4   LDDMITFVRVVERGSFVAAARQLGVPPATVSRKVQELEHRLGIELLRRTTRRVFVTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 S+    +E  ++  +  S KPSG LR+     +G  ++   L  F  LYP++ I
Sbjct: 64  AFFDNASQALTLIEEAELVAKSYSSKPSGVLRLLAPYTVGVLIIDQILPAFQRLYPEVLI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+N+ +D+     D A+R+   +  S+     L+       AAP Y++      +I 
Sbjct: 124 YLTLNNEPLDLIEHGFDVAMRVGA-LPDSTYAVHHLLRTGRRIVAAPSYIEKHPPIETIA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  ++F    P            +          + +N    ++ + + G G +L 
Sbjct: 183 DLEHHVFLSFAIETPPSGVVMT-FNRGEEQAQVTLAPRMVINEASVVLNHVLRGEGFSLF 241

Query: 245 PDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D +      +  L  I+ +  +     V   +     +  K++ F +F+  +A
Sbjct: 242 GDILTDSYLASGALKHILPEWQSDDPLEVSLVFSRHATSDPKVRLFIDFLTHEA 295


>gi|53721202|ref|YP_110187.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|217422839|ref|ZP_03454341.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|52211616|emb|CAH37611.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|217393747|gb|EEC33767.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 320

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 16  NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 76  NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 135

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 136 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAVPRHP 194

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 195 DDLPGSHWIGHGGLANLS---YSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGAGISA 251

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 252 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 298


>gi|237508921|ref|ZP_04521636.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|235001126|gb|EEP50550.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 312

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 8   NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 68  NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 128 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYARRHAVPRHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 187 DDLPGSHWIGHGGLANLS---YSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGAGISA 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 244 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 290


>gi|295699226|ref|YP_003607119.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438439|gb|ADG17608.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 301

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 127/299 (42%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   +R    +  SGS   AA +L LS S++++++  LE ++G +L  R AR L  T
Sbjct: 1   MN-DSADIRFLLTLRASGSLIAAARRLALSPSAVTQRLQQLEKKLGAQLVNRSARRLQFT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L    +E+  + +    +LQ       G L+I   +  G+  L   + EF    P
Sbjct: 60  DEGLLLCERGAELIEQFDALFDDLQTRRGGLVGTLKINAPLGFGRRHLAPLISEFQQQNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + L L ++ +  ++D  D  + + + +  S+LI   +        AAP  +K   +P
Sbjct: 120 DIDVALTLSDRPLTETLDRFDIVVHIGE-LPLSNLIGYTIAPNARFVCAAPALVKRIGQP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            S + L +   I   +      +   W  +  R     R+S  L  N    I Q+   G 
Sbjct: 179 GSPEALSRLPCIVLRE---NNEDVSLWQFSKGRTRRSVRVSAHLSCNDGDVIRQWACEGR 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ L  ++ V D+     LVR++     P   V     +      + + F  ++    R
Sbjct: 236 GVILRSEWDVADDLAKGKLVRLLPGWKAPDANVIALTHQRTGLPARTRHFMQYLQSSFR 294


>gi|28870796|ref|NP_793415.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213968919|ref|ZP_03397059.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301385359|ref|ZP_07233777.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061233|ref|ZP_07252774.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302133132|ref|ZP_07259122.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28854045|gb|AAO57110.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213926218|gb|EEB59773.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|331015907|gb|EGH95963.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 294

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 119/290 (41%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  G 
Sbjct: 4   IEDLRLAVTLSRCESLSAAARVLNVSPPALSMRLRKLETQLGITLANRDARRLSLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R ++ +  +LE      ++   +  G LR+A     G+  +   L  F  L+P + +
Sbjct: 64  RFARESAHLLEQLEALPESFKQRDERLVGTLRLAAPFGYGRQRIAPLLARFAKLHPQLSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L           +D  I +   +  S  I R L   H    A+P YL+    P    
Sbjct: 124 HLDLRETPW-PDRHDSDAVIHIGN-LNDSLWIARPLAQNHRWLCASPAYLEQHGVPSMPD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  I   +          W  +        RI   L  N      ++   G GI L
Sbjct: 182 ELASHRCICIRENDEDVTL---WHLSKGHAKKTLRIEPALLSNDGSVARRWAEQGLGIVL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D   + NLVR++ D    S  +    P     + +++A   F+
Sbjct: 239 RSQWDVSDAIASGNLVRVLADWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|163940208|ref|YP_001645092.1| LysR family transcriptional regulator [Bacillus weihenstephanensis
           KBAB4]
 gi|163862405|gb|ABY43464.1| transcriptional regulator, LysR family [Bacillus weihenstephanensis
           KBAB4]
          Length = 305

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 14/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   ISIELRQLEYFLAVSKELHFTRAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   + +F   YP
Sbjct: 67  EAGRVLLSHSKTIFHEVEQARSAIQDLNGLHHGSLTIGSLLTVVNYLLPPAILDFNKQYP 126

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L        +  +  D  I    P+Q   ++   L    +       +    
Sbjct: 127 NIELSVLGLRTGEIREKLLQNELDIGITF-LPVQDKEIVSIPLYKSELTLVVPTSHSLTE 185

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R+ +SI+EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 186 RKYVSIEELQDYPLI----LLPKNFYLTELITSHCQNFNFKPKPILEISTMESLIQMVAQ 241

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G GI +LP    D++  ++   ++I  +  TP+  +   Y          + F  
Sbjct: 242 GMGITVLPKPYIDFLQNEHIQAIKI--ENPTPTIDIGLIYRRDKYMCAATRKFIE 294


>gi|330503507|ref|YP_004380376.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328917793|gb|AEB58624.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 316

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 134/299 (44%), Gaps = 17/299 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE  +G  LF R    + +T  G  
Sbjct: 8   DQLELFLDVLETGSFSAAARRHPLTPSAVARRIDALERAMGSSLFSRTTHAVRVTPAGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL   P + +Q
Sbjct: 68  FAERARRILAELHLARAEAVSLSSAPEGLIRIDAPSPFGRRHLAPAIADFLRANPGLDVQ 127

Query: 126 LILDNKDIDISMD---YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  ID+  +     D  +R+  P+  S L+   L ++     A+P YL+    P S
Sbjct: 128 LRLIDSFIDLQGEHLGEVDIVVRIG-PLPDSRLVATPLASMIRIVCASPDYLRRRGIPRS 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG--EPRISCLQVNSYLSIMQYCVLGSG 240
             EL++H+ + +  L P     + W   VD  +   +P+      N+  +++   + G G
Sbjct: 187 PLELEQHDGLDWDSLAP----PYAWRFEVDGKLQLCKPKRLRQTSNNAETLLFGALAGLG 242

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +A LP ++  ++     L+ +  +   P     ++Y    E  + + + +   +F+  +
Sbjct: 243 VAHLPTWMSSEHLQRGELIPLFCEDGLPAAEPVSIYALRLE-REASPRTRLLLSFLQQR 300


>gi|290508697|ref|ZP_06548068.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289778091|gb|EFD86088.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 318

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+    S+T AAE+L +S+S+IS++IS LE   G  L +R  R ++L+E G 
Sbjct: 10  WAHLYWLTVLEEQKSYTRAAEKLGISKSAISQKISELERVTGKTLVHRTTRSVSLSEDGL 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    +E + +L        +      G LR+   +   +  L   +  FL  +P + +
Sbjct: 70  RLVAELNEPFGQLRDIFTGACDEGGPLRGTLRLTAPVAFSRQQLVPAIAPFLHQHPQLHL 129

Query: 125 QLILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QL + ++ + ++ +  D AIR   R+ +  +  +   L        A+  Y++    P +
Sbjct: 130 QLEVTDRLVSLASEGFDLAIRHCRREALPDTH-VAWPLCHTATLIVASADYIRRHGRPET 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  +T+     +    F      D  +          N+  S+    + G G+A
Sbjct: 189 PDDLRHHQCLTYPRGPQRPQWTFASRQAPDERVTINVQGPFATNNSESLRDAVLAGLGVA 248

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFL 292
           LLPD+  ++      +  ++            +Y   P   + +  ++ F  ++  
Sbjct: 249 LLPDFSAREAIGRGLVQELLPAWQPVEVFADKLYVIRPYTPRVSRAVETFSRYLKA 304


>gi|182677541|ref|YP_001831687.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633424|gb|ACB94198.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 304

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 140/295 (47%), Gaps = 8/295 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V  +GSF+ AA Q+ ++ S+IS+ I+ LE  +G++L  R  R L+LT++G   
Sbjct: 7   EMLVFVRVVEAGSFSEAARQMLMTPSTISKLIARLEERLGLRLLERSTRRLSLTDEGRIY 66

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  ++ +  +L+  +  L + +    G +R+  ++  G   ++  L  F   YP I + L
Sbjct: 67  YERSAALLAELDDIEGALAKGARNAGGIVRVNASVAFGVLGIEPLLPAFWEAYPHIVVDL 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L ++ +D+ +D  D A R+   +  S LI  ++        A+P YL+    P ++++L
Sbjct: 127 SLSDEIVDLYLDRTDIAFRVGA-LSDSGLIAVRIGVCRRRIVASPEYLERHGTPQTMEDL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + HN + F       +  F       R +       L  N+  ++ +    G G+A L D
Sbjct: 186 EGHNCLGFNFRRAAPVWPFR---EGGRIVDRILAGTLLANNGETVHRMAKAGVGLARLAD 242

Query: 247 YIVKDNPN---LVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  + +     LV +++ +       ++  Y    +   +++ F +F+  + + +
Sbjct: 243 FHTRADIASGCLVEVLDGIGYDDEEEIHALYLGGQRMPQRIRLFLDFMVPRLQQF 297


>gi|171316107|ref|ZP_02905332.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171098711|gb|EDT43505.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 307

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 127/290 (43%), Gaps = 7/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+F  V   G+ + AA+ L L Q ++S ++  LE  +G+KL  R+ R ++ T
Sbjct: 1   MDL-LAAMRIFVRVVERGNLSRAAKDLGLGQPTVSDRVDRLERFLGVKLLLRNTRAVSCT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++ +  V    +  +  +   +    G++RIA    LG+ +L   L       P
Sbjct: 60  DEGILFYQRSKVVLDAADEARAVVTLGNKIVRGRIRIAAPHGLGEVVLPEILTVIRDQNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L+L+++  D   +  D ++RL + I   + + R+L  +     A+P Y++    P
Sbjct: 120 QLYIDLVLNDEITDPVTEGVDISLRLGQ-IGDGNFVARRLGYVRRVLVASPLYIEKHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               ++  H  I    L           +   RP   P    +  + +  + +  + G+G
Sbjct: 179 EEPTDIVGHPFIRVTGLFNDGQLRLMSPSKSVRPT--PINVVVSTSHWRPVYELLLNGAG 236

Query: 241 IALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           I +L +++     ++  LVR++ +   P F ++   P       K +A  
Sbjct: 237 IGVLQEHVCIDALESGRLVRLLPNYTVPGFDLHALLPVTRPVPSKTQAVV 286


>gi|221068349|ref|ZP_03544454.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713372|gb|EED68740.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 309

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  +L  F  V  +GSFT AA++L ++++ +S+Q++ LE E    L  R  R +  T+ G
Sbjct: 15  NLKRLAYFAAVVETGSFTAAADRLGITKAVVSQQVARLEREFRTTLLTRTTRKVVPTDAG 74

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              ++  + +  +      EL E + +PSG LR+   +D G   +   + EF   YP  +
Sbjct: 75  RLFYQRCASILKEAGDAFDELGEVAAEPSGILRLTAALDYGITAVVPAITEFTRRYPQCK 134

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  +  ++ +D+     + AIR+   +   ++  R++ +      AAP   +   +    
Sbjct: 135 VDAVFSDQSLDLMSGQVELAIRVGW-LSDLNVQARQIGSFRQLLVAAPSMRRQVGQLKQP 193

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q +     +    L   C   F+      + +    +  + +++ L + +    G+G+++
Sbjct: 194 QHIGALPFVANTALRDPCSWRFSRGELEQQSVTVHPV--ISLDATLGVREAVRQGAGLSV 251

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPD+ V D+     L++++     PS  ++  +P A     K+KAF + +  
Sbjct: 252 LPDFAVADDLKNGTLIQVLPRWSLPSGGIHAVFPTARFRPAKVKAFVDLMQE 303


>gi|309779370|ref|ZP_07674132.1| regulatory protein [Ralstonia sp. 5_7_47FAA]
 gi|308921928|gb|EFP67563.1| regulatory protein [Ralstonia sp. 5_7_47FAA]
          Length = 300

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 120/299 (40%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VA++  F   A  +  S S +S  +  LET++G++L  R  R ++ T
Sbjct: 1   MKVDLGDLNAFAAVAQAKGFREGARLMGASASGLSEAVRRLETQLGVRLLNRTTRSVSPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L         ++E     +     +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGQRLLSRLRPALSEVEAALDVVNSFRERPAGTLKLNVPMSAARLVLPAIIPGFLDAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           +IQ++++ +   +DI     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 EIQLEVVAEESFVDILAAGFDAGIRYDERLEQD-MIAVPIGPRSQRFATAAAPGYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCV 236
            P   ++L  H  +  G      M  + +    +    +P    L     +   ++   V
Sbjct: 180 RPNHPRDLLDHACLR-GRFASGAMPPWEFERDGEVVNVDPSGPLLVRIGGAIDLVVDAAV 238

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G G+  L +  ++ +     L  ++E    P    Y  YP        L+AF +F+  
Sbjct: 239 AGVGVVHLYEDWLRPHLASGALEPVLEAWWRPFPGPYLYYPGRRLVPAPLRAFIDFVKA 297


>gi|319761568|ref|YP_004125505.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|317116129|gb|ADU98617.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
          Length = 308

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +WD LR+F  V R+ S   AA ++ +  S+I+R++  LE E+G +LF R   G  LT 
Sbjct: 5   RINWDNLRLFLAVVRAQSAQEAARRMEVDHSTITRRLHRLEKELGAQLFERTPAGHLLTP 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +   +     ++   S   +G +R+  T   G   L  +L  F   +P 
Sbjct: 65  AGQRLLEHVERMESSMVLVGEDIGGDSHMLTGHVRLGATEGFGSFFLAPHLSYFCDRHPG 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ++L++  + I++S   AD A+ + +P Q S  +  KL    +  YA+  YL+      
Sbjct: 125 IQVELLIVPRFINLSQREADLAVNIERP-QRSGQVCSKLTDYRLRLYASRSYLQGQPPIR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L  H    + + +      F+        I       L+  S ++       G G+
Sbjct: 184 RLRDLAAHRFFGYVEEL-----VFSQELRYLTSIMPDAPMSLRSTSVVAQYNAVREGRGL 238

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP ++      L  ++   +    T +   P   +   +++A  +++  
Sbjct: 239 AVLPCFMAAQCAELEPVLPHEVDVLRTFWLAAPADRRELARVRALWDYLRE 289


>gi|161519902|ref|YP_001583329.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353921|ref|YP_001949548.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160343952|gb|ABX17037.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337943|dbj|BAG47012.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 315

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 137/295 (46%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDSGSITAAAQQLDLTVSAASRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQDARAIIESVENAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D A R+ + ++ S+L  R++ +  +   A+P Y++    P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAFRIGR-LKDSTLHSRRIGSSRLRMLASPAYVEAHGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H L+ F    P+ +  +  L     P        +  +S  ++ Q  + G+G
Sbjct: 180 RKVEDLGRHTLLGFTQ--PESLNVWPILGADGEPQRIE--PAIWSSSGETLRQLALDGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIF 291
           I  L D++    +D   LV+++          +   Y      + ++ +F +++ 
Sbjct: 236 IVCLSDFMTAHDRDAGRLVQVLARQTLDVQQPINAVYYRNTAISSRIASFVDYLV 290


>gi|153835148|ref|ZP_01987815.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148868382|gb|EDL67499.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 295

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 139/301 (46%), Gaps = 17/301 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +L+ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVNSYIRVVEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLILD--NKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I++QLI     +  ++S+   D  I R  + + S S     L       YAAP YL+   
Sbjct: 121 IKLQLITTLPGQIPELSL---DLFISRELEQLNSLSFKASPLFEHKAQFYAAPSYLEKHG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P +++EL +HN++ +G+   + ++        +R             +  ++      G
Sbjct: 178 APQTVEELSQHNVLIWGENPIREIK-------TNRGKRISLSGNFATTNPEALFHGAKRG 230

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI L  + ++K++     LV I+ D+     TVY  YP+      + + F +++  +  
Sbjct: 231 MGILLSNNVMIKEDLKSGALVPILPDITADEATVYAYYPKLDYQHTRTQLFLDYLKSRLE 290

Query: 296 D 296
           +
Sbjct: 291 E 291


>gi|254255286|ref|ZP_04948602.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
 gi|124901023|gb|EAY71773.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
          Length = 371

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 125/289 (43%), Gaps = 6/289 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
                 +GSF  AA QL ++ +++S+ ++GLE  +G++L  R  R L LTE+G    R  
Sbjct: 66  LVQAVDAGSFAAAARQLGVTSAAVSKNVAGLEKALGVRLMNRTTRTLKLTEEGEAFLRHA 125

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 L+     +      P+G++RI+T+   G N +   L   L  YP + +++  D+
Sbjct: 126 RIALETLDAAIDTVSAQRAVPAGRVRISTSAAFGHNHVLPALPALLARYPALSVEVDFDD 185

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + IDI  D  D A+R    I  S+L+ R +  ++    A+P YL N   P +   L  H 
Sbjct: 186 RVIDIVRDGYDIAVR-GGNIPDSALVTRPICRLNTVLVASPDYLANHGVPETPDALHAHR 244

Query: 191 LITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           LI    L  +    +F         I     + L +++  S++Q      GIA +  ++ 
Sbjct: 245 LIARRFLSGQVAPWNFTGDDKSITTIDPSGKAMLTLSAPESLVQAACDSVGIAEVGVHLA 304

Query: 250 KD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D   +  L  I+     P S+ +   YP       +++     +    
Sbjct: 305 WDRLRSGALKVILHRFHHPGSYEMVMQYPHRALVAPRVQVTVKHLLEAL 353


>gi|262396725|ref|YP_003288578.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262340319|gb|ACY54113.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 295

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 138/301 (45%), Gaps = 17/301 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS+++  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVKSYIRVVEEGSFNAAARKLNTTSSAISKRVQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYQRAKNQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLILD--NKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I +QL      +  ++S+   D  I R  + + S S     L       YAAP YLK   
Sbjct: 121 ITLQLTTTLPGQLPELSL---DLFISRELEQLNSLSFKATALFEHKAQFYAAPSYLKKYG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P  +++L +HN++ +G+   + ++        +R             +  ++      G
Sbjct: 178 TPQCVEDLTEHNVLIWGEKPSREIK-------TNRGKRISLSGNFATTNPEALFHGAKRG 230

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI +  + ++KD+     LV I+ D+     TVY  YP+      + K F +++  +  
Sbjct: 231 MGILMTNNVMIKDDLKSGALVPILPDITADKATVYAYYPKLDYQHTRTKLFLDYLKSRLE 290

Query: 296 D 296
           +
Sbjct: 291 E 291


>gi|330875338|gb|EGH09487.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 319

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 116/290 (40%), Gaps = 6/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G+ L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECRGFAPASRKLGVPKSKLSRRIAGLEERLGVSLIHRSTRKFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + +  +  +Q S  +P GK+ I+    +    +   +  F+  +P +
Sbjct: 62  GRDYYGHCVAMLVEADAAEEAIQRSKSEPQGKVVISCPPAMAAMGINEAIAGFMAAHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+ +   N+ +D   +  D A+R+R  P++   L+ + L        A P          
Sbjct: 122 QVHIESTNRRVDPLSENIDIALRVRFPPLEDDGLVVKTLGHSAQRLVAHPDLAALLPADA 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L +   +      P+              +    +  L  +    I+Q  + G G+
Sbjct: 182 SFEALARLPSLDVPSSTPEHRWLLE--NGPGHYVEVRHVPRLVSSDLDGILQAVLQGVGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           A LP+ +V++      +V + +        ++  +         ++   +
Sbjct: 240 AQLPEILVREALQQGRMVELFDAHRPKCGILHAVFVSRRGLLPAVRGLLD 289


>gi|148974083|ref|ZP_01811616.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965780|gb|EDK31028.1| transcriptional regulator, LysR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 309

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 10/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V + GSFT AA    +  SS+S+QI  LE ++G++L  R  R  +LT  G
Sbjct: 3   NTNQLLLFLDVVQQGSFTKAATLHDMDNSSLSKQIKKLEQDLGVQLLNRSTRSFSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +   T  +   +   Q        +P G LRI + I  GQ  LQ  + +F+  YPD+Q
Sbjct: 63  EDILAQTYVLKDTISQIQGIADSYQSEPKGVLRITSPIYFGQQYLQPIITQFMRKYPDVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L LD+K  +I     D A R  K ++ S+LI +K+   +    A+  ++K   +P + 
Sbjct: 123 IVLSLDDKIANIIAGQFDIAFRFSKLVE-SNLIAKKIADSNFMLVASNDFVKQHGKPKTP 181

Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           Q+L     + +  GD+    +                R    +V+   +++     G G 
Sbjct: 182 QDLLSLPAVIYTNGDMTVDHLRISEEPHGNTFQSLTIR-GNYKVSDVRTMVSCVKDGLGY 240

Query: 242 ALL---PDYIVKDNPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFR 287
             L     Y      +LV ++ D    T    +Y  YP   + T  +K F 
Sbjct: 241 GFLDQSNLYASMKELDLVTLLPDYAISTADTAIYAVYPHRKQ-TKLVKEFI 290


>gi|126444842|ref|YP_001061330.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126224333|gb|ABN87838.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 320

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 16  NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 75

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 76  NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 135

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 136 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAVPRHP 194

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 195 DDLPGSHWIGHGGLANLS---YSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGAGISA 251

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 252 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 298


>gi|91793916|ref|YP_563567.1| DNA-binding transcriptional activator GcvA [Shewanella
           denitrificans OS217]
 gi|91715918|gb|ABE55844.1| transcriptional regulator, LysR family [Shewanella denitrificans
           OS217]
          Length = 303

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 113/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEDLFVTQAAVSHQIKALEDYLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L ++ +       L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTQLSEATDRLLARSA--IGSLTVSMSPSFAIQWLVPRLAKFSEKNPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI   +     +L   KL    +    +P  L   +      
Sbjct: 126 RIKAVDSETGSLTDDVDVAIYYGQG-NWPNLKADKLRNEVLIPVCSPSLLNGSKPLEKPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   +      +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKYHTLLHDANR----QDWQAWFRQCGVTDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     L+    +V+      +    +A    GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLICPFPEVLVSKDAYFLVCQQAHAELGKIAAFRAWML 289


>gi|170692413|ref|ZP_02883576.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142843|gb|EDT11008.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 301

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 60/302 (19%), Positives = 129/302 (42%), Gaps = 11/302 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   +R    + ++GS   A+ +L L+ S++++++  +E ++G +L  R AR LT TE+G
Sbjct: 3   DTADIRFLLTIQQNGSLIAASRKLGLTASAVTQRLQQIEKKLGSRLVERTARKLTFTEEG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +E+  +L+T   +L+       G L++   +  G+  L   + +F    PD+ 
Sbjct: 63  MLLCLRGAELIEQLDTLLEDLRIHHGGLVGTLKVNAPLGFGRRYLAPVIADFQQENPDVD 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++ +  + D  D  + + + +++S+L+   +        A+P ++K    P   
Sbjct: 123 VALTLSDQPLTEAADRFDVVVHIGE-LRASNLVGHTIAPNARFVCASPAFVKRFGNPEQP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L     I   +          W  +  +     R++  L  N    I ++   G G+ 
Sbjct: 182 DDLAGLPCIVLRENQEDVSL---WHFSKGKTGRSVRVTSKLSCNDGDVIRRWACEGRGVI 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR---D 296
           L  ++ V D+     LVR++     P   V            + + F  ++  + +    
Sbjct: 239 LRSEWDVADDIRQGRLVRLLPGWKAPDAHVIALTHNRSGLPRRTRNFMQYLQARFKPLPP 298

Query: 297 WK 298
           W+
Sbjct: 299 WR 300


>gi|167561268|ref|ZP_02354184.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 320

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 138/291 (47%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V   GSF  AAE++ +S +  S+ +  LE ++G +L +R  R +  TE G + +
Sbjct: 7   MNVFRYVVEVGSFVGAAERMEMSAAMASKHVMHLEHQLGARLLHRTTRRVAPTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   +L+     +  +SV P G+LR+ +    G   +   +  +   YPD+ +++ 
Sbjct: 67  ERLVQALTELDEAGQAVGAASVVPQGRLRVTSLSAFGLRHVMDAVTSYAERYPDVTVEIT 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L ++ +++  +  D A+R     ++SSSL+ R++ T H+   A+P YL     P ++ +L
Sbjct: 127 LSDRIVELIDEGYDVAVRAAPAGMKSSSLVARQIATAHILLVASPEYLAKHGTPTTVADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN+I      P        +A V      P    + VN    +    + G+G+ LL  
Sbjct: 187 QRHNII---RREPNETLLDATIADVAAASRMPLSGNVIVNHLEGLRVAVLGGAGVGLLGT 243

Query: 247 YIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            ++ ++     LV ++ D + P    +Y  Y      + K++ F +F+  +
Sbjct: 244 EVIGEDIESGRLVPLLLDALPPRELPIYAVYASRRHVSAKVRTFVDFLADR 294


>gi|116250546|ref|YP_766384.1| LysR family transcriptional regulator protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255194|emb|CAK06268.1| putative LysR family transcription regulator protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 293

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P++
Sbjct: 61  GEVFLASAERMETEMLAAQASLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S+  AD AI L +P Q   L+  KL    +  YA+  YL +   P  
Sbjct: 121 KIQLVPVPRSFSLSLREADIAITLERPDQ-GRLVSSKLTDYTLGLYASRDYLASQGTPAD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSG 240
           I  L  H  I +       +ED  + A+++      R   +  ++++ +   +    G+G
Sbjct: 180 IDALKAHRRIGY-------VEDLIFTASLNFSGAVMRSWDAGFEISTAIGQTEAVRTGAG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I +L DYI +  P L RI+ +V       +  Y E  ++  ++++  +F+  
Sbjct: 233 IGILHDYIARQYPELQRILPEVSI-RRAYWTTYHETARDLLRVRSVADFLQE 283


>gi|330876390|gb|EGH10539.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 316

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 114/295 (38%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LTE
Sbjct: 7   DMSLDLLRAFEVAARLRSFTAAAIELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  + PD
Sbjct: 67  AGEILFSHVQAGLQSIDSGLIAITEQHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+             R L +  +    +P  + N + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESRWLFSEEVFPVCSPLLIANRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+           D+  +         P    L+ ++Y  I+Q  + G GI
Sbjct: 184 PNDALRDFPLLHLRGDSINNWFDWAGVFRALDIPQAPAPGQLRFDNYTLIIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWRHLVDDLLDQGLLCRPIAGAAISGHGYYVVLPQRKRRVQIVQQFMDWLASE 298


>gi|148976120|ref|ZP_01812863.1| putative transcriptional regulator protein [Vibrionales bacterium
           SWAT-3]
 gi|145964515|gb|EDK29769.1| putative transcriptional regulator protein [Vibrionales bacterium
           SWAT-3]
          Length = 292

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 130/296 (43%), Gaps = 11/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L++F  V   GSFT AA  L L ++++SR+I+ LE  + I+LF+R  R L++T+ 
Sbjct: 1   MKIEDLKLFTTVVELGSFTAAANALDLPRANVSRRINDLEKSLNIQLFFRTTRSLSVTKS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    +    LE            P G+++I    +   +++Q  L +F  LYP+I
Sbjct: 61  GELYYNELLKALSALEKANHVASNLLEVPHGRVKIGLLPE-TGDIVQATLFKFQDLYPEI 119

Query: 123 QIQL-ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +  + N  ID+     D A+   + +  S+++ RK++ +      +P Y+     P 
Sbjct: 120 ELDIRSISNGFIDMYRQGLDLAMHGGR-LSDSNVVARKVMDLQRIFVVSPEYIAKTGRPA 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++EL K   + F    P    D  W  +      EP I     +S   +        GI
Sbjct: 179 TLEELAKFPFVCF--RWPSGDIDKEWEISNQVVKVEPSI---VSDSIGFVKVASARHRGI 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP  +V+       LV +  +        +  YP+    +   +   +F+  + 
Sbjct: 234 ALLPQLMVRQELKEGTLVNLFPNETLQKEEAWLLYPQRKALSHASQLLIDFLLQEL 289


>gi|160901055|ref|YP_001566637.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366639|gb|ABX38252.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 323

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 115/300 (38%), Gaps = 6/300 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M  +    +  F      GS   AA    +S  + S+ ++ LE  +G++L +R  R L L
Sbjct: 1   MPINELRAIATFAKAVELGSLRQAALSQGVSPQAASQAVAHLEQHLGVRLLHRTTRSLAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE+G +  + T      L+      ++S    +G LRI         +L   L EF  L+
Sbjct: 61  TEEGQRFLQDTQPALAALDRALNLARDSREGIAGPLRIVGPKSCFAPVLMPLLDEFCRLH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I   + LD+   +  +D  D   R+       S+I R+L  + +   AAP YL+    
Sbjct: 121 PGIVPDVRLDDGIGNWVLDRVDAGFRIGAS-PDESVIGRRLFPVQLIVCAAPQYLQRHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+ EL  H    F       +  + +L              L  N     +   + G 
Sbjct: 180 PRSLDELAAHRCSMFRHAATDTVMPW-YLPVDGELTHRYLQPALSTNDAELELHAVLAGQ 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +  L +     +     LV ++   ++    ++  Y        +++AF +    + +D
Sbjct: 239 VLGQLSNICAAAHIRAGRLVPVLLAHVSEHIGLHVYYGSRDALPRRVRAFIDLAVQRLQD 298


>gi|172062666|ref|YP_001810317.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995183|gb|ACB66101.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 306

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 131/293 (44%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L++ + + Q  + +P G LR+        N L   +  F   +P 
Sbjct: 61  TAERIYERCAAVLDELDSLEAQAQSHTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L  + +D+  +  D  I +   + S + + R +  I +   A P YL+    P 
Sbjct: 121 VRLDVTLTERPVDLVGEGYDIGIVVPYMLTSETTVVRLVERIPVVIVATPAYLRTHPRPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L +H  +     + +    F         +  P    +  NS +   +  +   GI
Sbjct: 181 TPAALAEHAFVPLSPSLRRPALSFR---VDGDTLTVPLSFDISSNSPVFNREMVMHDFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +V+    +  LV+++E  D++     +   Y        K+KAF ++
Sbjct: 238 GVVPRTLVEAELASGALVQLLEGADLVDAFVEIKLAYANRALLPAKVKAFIDY 290


>gi|91786549|ref|YP_547501.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91695774|gb|ABE42603.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 296

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 135/300 (45%), Gaps = 9/300 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    ++ F  +A  GS T AA  +  S  ++ R ++G E ++G++LF R  R ++LTE
Sbjct: 1   MDKLRAMQAFIHIAEEGSLTAAARVMESSLPAMVRTLAGFEAQLGVRLFNRTTRRISLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +      ++   L+  +  L   + +P+G L I   +  GQ  +   +  F+  Y  
Sbjct: 61  EGRRHLESCRQLLAALDDAEAALTAEAGEPTGHLTITAPVLFGQMHVAPAVTRFVQQYEK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++  ++L ++ +++  +  D  IR+ +P + S+L+ + +  I     A+P +LK    P 
Sbjct: 121 MRCSMVLLDRVVNLLEEGIDVGIRIGEP-EDSTLVAQTVGHIRRLVVASPDWLKRHGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L K N +     + +    +       RP+       L+ N     +  CV G+G+
Sbjct: 180 HPKDLLKANCV----RVTEHALTWGPFNDQGRPLRLAVSGNLEFNQNAPAVAACVAGAGL 235

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +   Y V     +  L  ++ED       +   YP A     + + F  +I  + +D++
Sbjct: 236 GMFLSYQVAPFLQSKQLCTVLEDFEPAVRPINVVYPHARLLPMRTRVFIEWIKKELKDFQ 295


>gi|237808544|ref|YP_002892984.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500805|gb|ACQ93398.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 301

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 13/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF V A S +F  AA++LH+S  S+SR I  LE   G  LF+R  R + +T+ G +
Sbjct: 6   ELLRVFVVAAESKTFRDAADKLHMSPQSVSRVIKMLEGTYGELLFHRSTRTIKITKFGEQ 65

Query: 66  LHRVTSEVYHKLETTQIELQE--SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           L    S     +    +  Q+  +  + SG + I T   +G++ L   L +F   YP I 
Sbjct: 66  LLSRASHALDVMNDVFLFGQQKNNHDELSGNITITTPDLIGRDFLYPLLSDFHKKYPKIH 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +   N    +  +  D  IR+ K I+++  I RK+  +     A+P  + N   P  +
Sbjct: 126 IDIRASNSFSHLVDEQIDIGIRVGK-IKNNGFIVRKVNEVKFFLVASPEAINNFGTPRHL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL     I   D      + + WL      I  P     + +         + G G   
Sbjct: 185 DELKNLPAIEAIDC--NSGKGWPWLFADGVEI-HPGNVNFRTDDPEIERLAILDGFGFGQ 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF----RNFI 290
           + D+I  ++    +L+R++E+     + VY   P+      +++       +++
Sbjct: 242 ISDWIANNDIKNGHLIRLLEESEPEPWDVYVYRPQKGPVPARVRLLYDSIIDYL 295


>gi|194289699|ref|YP_002005606.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193223534|emb|CAQ69539.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 302

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 134/296 (45%), Gaps = 1/296 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD L+ F  V +SGS   AA  LH++ S++ R+++ LE  +G  LF RHA G  +T  G
Sbjct: 5   DWDDLKYFLAVGQSGSLAGAARALHVNHSTVLRRLARLEDTLGTLLFERHATGYAMTLAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +  + V  +++  Q +L     + SG LR+ TT  L   LL      F  L+P IQ
Sbjct: 65  EALAQRLAGVGEQIDAAQRQLSGLDSQLSGPLRVTTTDTLLGALLMPLFAAFRALHPRIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +QL+++N  + +S   AD AIR         L+ R++  +    YAA  YL+    P + 
Sbjct: 125 LQLVVNNSFLSLSRREADMAIR-PANTPPEYLVGRRIGRLQTAPYAARSYLQQLGLPAAA 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
                 +   +  ++P         A   R         +  +S +++      G G  +
Sbjct: 184 DSPALSDWPAYDWVVPDEALSHLAQARWIREHVPEPRRVVSADSLVAMADAVRHGMGAGM 243

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           L   +  D+P LVR+          ++      L+++ +++A  +F+  +    K+
Sbjct: 244 LLCLLAGDDPALVRLAPPDAAMDTDLWVLTHPDLRHSARVRALADFLHERLGQGKW 299


>gi|86158624|ref|YP_465409.1| LysR family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775135|gb|ABC81972.1| transcriptional regulator, LysR family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 337

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/297 (28%), Positives = 132/297 (44%), Gaps = 16/297 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D LR+   V  +G  T AA +L L +S++SR+++ LE  +G++L  R+AR L LTE G
Sbjct: 7   SLDDLRLLVEVVATGGLTAAAARLGLRKSTVSRRLAALEERLGVRLLERNARRLRLTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H   + +  +      E  E+   P G LRI  T  L   LL   + E LL +P + 
Sbjct: 67  RAYHARAARLVAEARALDRETAEARGAPQGTLRI-ATPALLGELLAPAVAELLLRHPRLS 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ L    +D+  +  D A+R   P+  SSL+ R+L T+    YA+P YL     P + 
Sbjct: 126 VEVALAPPHVDLLAEEHDLALRTG-PLADSSLVARRLGTLRTGCYASPAYLARRGTPATA 184

Query: 184 QELDK------HNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCV 236
             L        H+ I    L+ +   D  W           R    L+V S  +      
Sbjct: 185 DALRGEGDAGAHDCI----LLAEAGTDEVWFFGAGATARTVRPAGRLRVPSVRAGQLAAR 240

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+  LP  +V ++     LV ++E    P   V+  YP       K++AF   +
Sbjct: 241 AGLGVVRLPAALVAEDVRSGRLVAVLEAETPPGMPVHAVYPSGRHLAPKVRAFLELV 297


>gi|221210626|ref|ZP_03583606.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221169582|gb|EEE02049.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 295

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 121/296 (40%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  +   G    A  ++ LS +++S +++ LE+  G  L  R  R ++LT++
Sbjct: 1   MLLDNLALFLRIVEKGGLAAAGREVGLSPATVSERLAALESYYGAALLTRTTRAISLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  + +  +  ++  +   SG +R++   DLGQ  +   +  FL  +P +
Sbjct: 61  GRTLVAGARRLLAEADELESRVRLGAHTLSGPVRLSAPSDLGQARVVPVVDAFLAEHPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+     D AIR R  +  S+L  R L        A+P YL     P  
Sbjct: 121 TVDLHLGDGYVDLVGQGLDFAIR-RGTLADSTLRSRSLGRSRRVVCASPAYLAAHGTPQH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             EL  H+ I       +  E   W   +D  +    +   +V N    +  +CV G GI
Sbjct: 180 PDELAAHDCIVMRFGPERYAE---WPFRIDGALTRVAVRGRRVANDGALVRAWCVAGHGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL     V+ +     LV I+         +   YP       +++A  + +    
Sbjct: 237 ALKSLLDVEQDLASGALVEILGAFSPGEVDLQIVYPGNAVQPRRVRALIDRLAQAL 292


>gi|167578610|ref|ZP_02371484.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 290

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 4   LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G L + T        L   L +     P + ++++
Sbjct: 64  AAVRQSLDALRVATADIRSRRA--NGTLTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 121

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   D+AD AI              +L    +    +P +     +     +L 
Sbjct: 122 TS-QDIDPQRDHADVAILFGAG-DWPGCTSTRLFQERVTPVCSPAFRAAHADIAQPADLL 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 180 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 239

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 240 LVDTTVAAGQLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 286


>gi|328675265|gb|AEB27940.1| transcriptional regulator, LysR family [Francisella cf. novicida
           3523]
          Length = 298

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 9/290 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +        FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT 
Sbjct: 6   NISISLFEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELRVDLLNRTTRSLSLTH 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      + ++++  +   +    +PSG L+I+T+    QN+L   +KE+   +  
Sbjct: 66  EGRLLFNYCRNLQNEIDNIRDLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ ++ K  D   +  D    +        ++ RK+ T      A+P YLK    P 
Sbjct: 126 VKIEVSIEEKMPDFKANEVDIIFAVNW-TPPEDIVARKIATTRYVLCASPTYLKKNGFPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  HN I         +   N     ++   +     +  N+   I +  +   GI
Sbjct: 185 NLSDLANHNYIPHKSRTTALVNTKN-----NKINPQTLPYSISANNIDFIKECVLNDFGI 239

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           A   +YIVK    N  L+ +++D       +Y  YP+      K+K F N
Sbjct: 240 AQFHEYIVKNEIQNGQLIELLKDDFFDQQDIYIYYPKNKFVQPKVKEFVN 289


>gi|332185086|ref|ZP_08386835.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
 gi|332014810|gb|EGI56866.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
          Length = 290

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 14/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            + +F  V ++GS    A    LS + +S++I+ LE  +G++L +R  R LT+TE G+  
Sbjct: 4   DIALFVDVVQAGSLAGGARTWRLSPAMVSKRIARLEARLGVRLLHRTTRRLTMTEAGAAF 63

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           H   + +   L   +  +   +  P+G LR+      G+  +   L  FL  YP I++ L
Sbjct: 64  HGEVAPLVAGLRAAEARVSHIAAGPTGPLRVTAPTSFGRLWVAPYLPGFLARYPAIRLSL 123

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D AIR+      S L   +         A+P YL     P  I  L
Sbjct: 124 DLTDDFVDVMGERVDLAIRITAA-PPSGLAVHRFADNRRVLCASPSYLAQAGTPTGIAAL 182

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H L+     +P       W  T     G+   S ++ NS   + +  + G+GIAL   
Sbjct: 183 ADHRLLAANGQLP-------WRLTGATVTGD---SLIETNSSEVVREMALAGAGIALRSL 232

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + V D   +  LVR++                 +     + A    +    RD
Sbjct: 233 WDVADALADGRLVRVLPRYEGSVAVGILGLHAPIGAPAAVPALIAHLAEAWRD 285


>gi|253997143|ref|YP_003049207.1| LysR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253983822|gb|ACT48680.1| transcriptional regulator, LysR family [Methylotenera mobilis JLW8]
          Length = 301

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 124/295 (42%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR+F  VA S +F  A+ +L +S  S++R I  LE  +G  LFYR  R  T+T
Sbjct: 1   MQNQLEMLRIFKAVAESSNFKEASIRLGISPQSVTRAIKELEERLGEPLFYRSTRNTTIT 60

Query: 61  EQGSKLHRVTSEVYHKLETT--QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           E G ++   + EV  +++T     +  ++     G ++I      GQ  L   L  F   
Sbjct: 61  EFGKQMALKSEEVLEQVDTLFQLNQHADTPQAIEGTVKITMPNTFGQQYLLPALTAFAKE 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP+IQ+ L   N   ++  D  D  +R+     + + + R++  I  H   AP  +    
Sbjct: 121 YPNIQLDLRFSNLIDNVVADQMDIGVRIGFFSNNRN-VARRVNEIKFHIVGAPALIAKTG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P  + +L         D     M  + +    D P   P       +   + +   + G
Sbjct: 180 APQQVNDLCTMPYTGLIDQNTGRMWSWTF---ADEPDCFPSAPAFITDDIKAELAAVLAG 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G   LP++I +    +  LV ++ED     + VY   P+      +++   +++
Sbjct: 237 IGYGQLPNFICEQYIKSGQLVTVLEDQSPAPWGVYVYRPQRGPVAERVRVLFDYL 291


>gi|182678419|ref|YP_001832565.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634302|gb|ACB95076.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 305

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 125/294 (42%), Gaps = 16/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V R+GSF+ AA +  ++ S+I RQI  LE ++G+ L  R  R LTLT+ G +LH
Sbjct: 9   LSTFVDVVRAGSFSGAARRRAMTPSAIVRQIDTLELDLGVALLVRSTRALTLTDAGRRLH 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++   L  T  E+       SG LRIA     G+  +   L      +P ++++L 
Sbjct: 69  ERALQLLDDLADTHAEVSAFDGSVSGTLRIACFPTFGKRYVLPVLGTLQAEHPSLKVELD 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L  +  D  ++  D  +R+ + +  S+LI  KL  +     A+P YL     P    +L 
Sbjct: 129 LTERLADPVLERLDVVVRMGQ-LSDSTLIATKLAPLTRLLVASPAYLAQAGVPGGTVDLA 187

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVLGSGIALLP 245
            H L+          +   W   +  P G         + + + ++    V G GIA L 
Sbjct: 188 SHRLL----DKLHGADLLGWREVLGCPAGHAGNGRVVFRSDDFEALRAAAVAGMGIAFLS 243

Query: 246 DYIVKDN---PNLVRIM---EDVITPSFTVYFCYPEALKNT-GKLKAFRNFIFL 292
            ++V  +     L+R+    E        +Y     AL     K++AF   +  
Sbjct: 244 SWVVGPDVRSGTLIRLSANGEPWNEQPGGIYLL--RALPQPIAKVRAFTEALRA 295


>gi|121596886|ref|YP_990303.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|134284157|ref|ZP_01770850.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|238563203|ref|ZP_00439260.2| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|251767794|ref|ZP_04820253.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254203217|ref|ZP_04909579.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254208552|ref|ZP_04914901.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|121224684|gb|ABM48215.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|134244475|gb|EBA44580.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|147746262|gb|EDK53340.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147751239|gb|EDK58307.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|238521170|gb|EEP84624.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243061704|gb|EES43890.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 343

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 57  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGTRLF 116

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G   + T        L   L +     P + ++++
Sbjct: 117 AAVRQSLDALRAATADIRSRRA--NGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 174

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   ++AD AI              +L   H+    +P +     +     +L 
Sbjct: 175 TS-QDIDPQREHADVAILFGAG-DWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLL 232

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 233 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 292

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 293 LVDTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 339


>gi|294626698|ref|ZP_06705293.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598946|gb|EFF43088.1| transcriptional regulator lysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 304

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 120/285 (42%), Gaps = 6/285 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+  R F  V   GS + AA  L L+Q +I R ++ LE  + + LF R   GL  T+
Sbjct: 4   TISWELYRSFLAVLEEGSLSAAARALGLTQPTIGRHVAALEDLLAVPLFVRSQTGLLPTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +       Q  +        G +RI+ +  +G  +L   L      +P 
Sbjct: 64  AAQALRSHARAMADIAAALQRAVSRHGEAVQGTVRISASEVVGAEILPPILAALRAAHPQ 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+L N+  D+    AD A+R+ +P Q   L+ R++  + +  +A P Y      P 
Sbjct: 124 LRMELVLSNRVQDLLHRQADVAVRMIRPQQD-LLVARRVGKVAIGLHAHPDYADRHGLPQ 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L +H L+ F    P     F   A    P  EP    L+ +S L+ +     G GI
Sbjct: 183 RPEDLAQHALVGFDTDTP-----FLRGARKGFPFWEPAAFALRADSDLAQLALIRAGCGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
                 + +  P L+ ++   +  +  V+    + L+ +    A 
Sbjct: 238 GFCQAMLARRTPGLLPVLPQQVGVALDVWVTMHQDLRASAACSAV 282


>gi|146306190|ref|YP_001186655.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574391|gb|ABP83923.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 312

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 13/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L+ F  VA +G  + AA  L +S+S +SR++  LE ++GI+L  R  RG  LTE 
Sbjct: 6   LNLEDLQTFVEVADAGGISAAARHLGVSKSIVSRRLFRLEADLGIQLLARTTRGAALTEA 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G       +    ++ET + E    +    G+LR+A  +  G       L E    YP +
Sbjct: 66  GMTFREHAARASAEIETAR-ETILPTGDLRGRLRVAVPLSSGPIHFAPVLAEMARRYPRL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI     ++ +D+  +  DCAIR+   ++ S+L+ +++  I+    A+P Y+K    P +
Sbjct: 125 QIDAAYGDRFVDLVAEGFDCAIRVGA-LRDSNLLAKRVGQIYGKLVASPDYIKAHGAPET 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             E+  H  +   +               ++ I        + ++  ++      G GIA
Sbjct: 184 PDEIAAHQALLGAESWR--------FMDGNKVITVQPQGRFKSDNGAALAGAAAAGLGIA 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD +  +   +  LV IM     P   VY   P +     K++     +  
Sbjct: 236 WLPDCVTYEYLASGALVPIMTRYPLPVGDVYIVRPPSAHPAQKVRILSELLIE 288


>gi|104781378|ref|YP_607876.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110365|emb|CAK15073.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 305

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 135/302 (44%), Gaps = 14/302 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D   +++ F  VA   SF  AA  L  S S+++R +  LE   G KLF R A  ++L
Sbjct: 1   MALDMLREIQAFVSVAHKRSFISAARSLGRSPSAVTRAVQTLEDNTGAKLFNRSASAVSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L      +         EL   +    G +R+A    L Q++L   L EF   +
Sbjct: 61  TEAGERLLPHAERLLDVQRDAADELAALTGSAQGWIRLAAPEVLAQHVLPSVLAEFSQRH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +   ++ +D      D  IR   P QSS LI   L     + YA+P YL +   
Sbjct: 121 PKVTLDVQFGDQALDPLQGKFDFVIRGAFP-QSSELIGYPLWAYRRYLYASPRYLASAGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P ++ EL++H LI      P+ ++ +++          P+   L++ S ++++Q  + G+
Sbjct: 180 PTTLDELERHALILH--TAPRILKAWHFCREGQITSLRPQ-PRLRLGSGVAVLQSTLAGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIF 291
           GIA L D++ + +     LV+I       S +     ++  YP       +++     + 
Sbjct: 237 GIARLADWLAEPHVQAGRLVKICPQYHLTSSSGHDPQMHAVYPAG-NMPARVRELLQALR 295

Query: 292 LK 293
             
Sbjct: 296 EA 297


>gi|325925917|ref|ZP_08187286.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325543748|gb|EGD15162.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 310

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 120/288 (41%), Gaps = 9/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  +A   SF   A  L +S ++++R I+ LE  +G+ L  R  R +  T  G 
Sbjct: 12  IQEMTLFAALAEHTSFAGVARHLGISTATVTRTIAQLEARLGVLLVVRSTRTMRFTAAGQ 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  +LE  +         PSG L +      G   +   +  FL  YP ++ 
Sbjct: 72  QYASDCRRLLAELEDVESRAAGLHTLPSGLLTVTAPQMFGALHVTPVVAHFLSRYPAMRA 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++ + +  +  D AIR+   +  SSL    + ++     A+P YL     P    
Sbjct: 132 RTLLVDRVVPLLEEGIDVAIRIG-TLPDSSLTAIPVGSVRRMVCASPGYLAEHGIPQHPD 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L +H  I+             W   +D    E  + S L V+++ + +   V G G+  
Sbjct: 191 RLPQHATIS----TSAAERAPKWAFRLDGRAHEVDVASRLSVSAFNAAIVAAVDGWGLTQ 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P Y V+ +     LV +++        V+  + E  + + K++ F +
Sbjct: 247 VPSYQVRQHLQNGTLVSVLDAFEIAPEPVHVVHVEGRRGSSKVRTFVD 294


>gi|156976826|ref|YP_001447732.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156528420|gb|ABU73505.1| hypothetical protein VIBHAR_05602 [Vibrio harveyi ATCC BAA-1116]
          Length = 300

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 133/292 (45%), Gaps = 8/292 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     ++ F      GSFT A+++L +S+S +SR +  LET +G +L  R  + L+LT
Sbjct: 5   MNL-ITLIKSFICTVEEGSFTGASKKLGVSKSLVSRNVRDLETYLGTRLMNRSTKALSLT 63

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G + ++    +  +LE     ++ +S   SG L I     L + +L   +  F   YP
Sbjct: 64  DAGHQYYQEAHVLILQLEALNDTMKFNSNDISGTLNILAPNGLTEIILMPFICSFSDKYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++++ L+LD+   D+S    D AIR    + Q S LI  K+        A P YL+N   
Sbjct: 124 ELRLNLLLDDGLDDLSSQGYDVAIRSGHLVKQDSDLIATKITENMSVICATPQYLENTSS 183

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L  ++L  H +I   +L    +  FN    + + +       L VNS  ++        
Sbjct: 184 LLHPRDLHSHRIIEDPNLKNYKLWRFN---KMGKELDVQVSPSLCVNSVQAVKTALKQNY 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A+LP   V+D       + +++D   P+  VY  Y        K+K F  
Sbjct: 241 GVAMLPRAFVEDELCRGEFIEVLKDYQLPTRMVYALYRGRSNTPRKVKVFIE 292


>gi|153837397|ref|ZP_01990064.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149749312|gb|EDM60091.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 295

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 138/301 (45%), Gaps = 17/301 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVQSYIRVIEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLILD--NKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I +QL      +  ++S+   D  I R  + + S S     L       YAAP YL+   
Sbjct: 121 ITLQLTTTLPGQLPELSL---DLFISRHLEQLNSLSFKATPLFEHKAQFYAAPSYLEKYG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P +++EL KHN++ +G+   + ++        +R             +  ++      G
Sbjct: 178 APQNVEELTKHNILIWGEKPAREIK-------TNRGKRVSLSGNFATTNPEALFHGAKRG 230

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI +  + ++KD+     LV I+ DV     TVY  YP+      + + F +++  +  
Sbjct: 231 MGILMTNNVMIKDDLKSGALVPILPDVTADEATVYAYYPKLDYQHTRTQLFLDYLKSRLE 290

Query: 296 D 296
           +
Sbjct: 291 E 291


>gi|90579068|ref|ZP_01234878.1| hypothetical D-serine deaminase activator [Vibrio angustum S14]
 gi|90439901|gb|EAS65082.1| hypothetical D-serine deaminase activator [Vibrio angustum S14]
          Length = 301

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 6/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F + A   SFT AAE L L+QS++S +I  LE  +G++LF R  R L LT++G 
Sbjct: 11  LSGLHCFLIAAEQMSFTRAAEVLFLTQSAVSHKIKNLEEALGVQLFIRQPRKLILTDEGF 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L +V +  +   +         +V+ SG + I+      Q  L   LK F+ LYP ++I
Sbjct: 71  RLKQVLAANF--GDIAHEIRDLKNVELSGDINISVPPTFAQTWLLPRLKSFIDLYPMLRI 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   N+ +D   +  DCAI   K  +   L   KL+   M    +  Y        + +
Sbjct: 129 HLRTRNELVDFQTESFDCAIYFGKG-EYQGLHSCKLMDEAMQPVCSHDYAIANDLYDNPE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +  L+       +   +  W    ++   +   S    +     +Q    G G+A+ 
Sbjct: 188 GLIQCLLLHDAAPWARAGRNDEWQLWAEQYGTQLPESECTFDRSDLALQAAECGIGVAMG 247

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               + +      LV   + +    F+ Y      ++NT K+KAF +++F +
Sbjct: 248 RHSFIAERLVEKRLVTPFDMMAPSPFSYYVVCRHNMQNTPKIKAFSDWLFSE 299


>gi|15890853|ref|NP_356525.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15159148|gb|AAK89310.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 305

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 8/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F WD L+ F  VAR+G  + AA  L  S +++SR I  LE  +  KLF R+ RG  LT 
Sbjct: 4   PFTWDDLQYFLAVARTGQLSSAARSLRTSHATVSRHIDRLEFSLKTKLFERNPRGYELTT 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +  + E  Q ++ ES     G +R++             LK+F   +P 
Sbjct: 64  VGRRLVDTVERIEAEAERLQSDISESGSLLRGVVRLSAPEGFSNFFFVERLKDFAATHPH 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++++   + + +S   AD A+ L  P ++   I  +++   +H YA+  YL    +  
Sbjct: 124 IMVEMVTIQQIMALSRKEADVAVTL-DPPKAGPYINEQIIDYTLHIYASRSYLAGHPKIT 182

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L  H  I +  DLI     D+       R +        Q +S  + +   + G G
Sbjct: 183 RREDLPNHFFIGYVQDLIFSPGLDYM------RDVWPGLRPNFQSSSIFAQLTATLSGRG 236

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + +LP++I    P+L  ++   +      +    +   N  ++++  +FI   AR
Sbjct: 237 LCILPNFIAARFPDLQMVLPGDVELRRGYWLTSHQDFANVPRVRSLMDFILTTAR 291


>gi|332716844|ref|YP_004444310.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325063529|gb|ADY67219.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 309

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 134/297 (45%), Gaps = 6/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F WD L+ F  VAR+G  + AA  L  S +++SR I  LE  +  KLF R+ RG  LT 
Sbjct: 8   PFTWDDLQYFLAVARTGQLSSAARSLRTSHATVSRHIDRLEFSLKTKLFERNPRGYELTT 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +  + E  Q ++ ES     G +R++             LK+F + +P 
Sbjct: 68  VGRRLVDTVERIEAEAERLQSDISESGSLLRGVVRLSAPEGFSNFFFVERLKDFAVTHPH 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++++   + + +S   AD A+ L  P ++   I  ++V   +H YA+  YL +  +  
Sbjct: 128 IMVEMVTIQQIMALSKKEADVAVTL-DPPKAGPYINEQIVDYTLHIYASRSYLASHPKIT 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L  H  I +   +      F+      R +        Q +S  + +   + G G+
Sbjct: 187 RREDLPDHFFIGYVQDL-----IFSPGLNYMRDVMPGLRPNFQSSSIFAQLTATLSGRGL 241

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +LP++I    P+L  ++E  +      +    + L N  ++++  +FI   AR  +
Sbjct: 242 CILPNFIAARFPDLQMVLEGEVELRRGYWLTSHQDLANVPRVRSLMDFILTTARAHQ 298


>gi|226226426|ref|YP_002760532.1| LysR family transcriptional regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226089617|dbj|BAH38062.1| LysR family transcriptional regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 301

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 116/288 (40%), Gaps = 7/288 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VARS S   AA +L ++ S++++++  LE  +G++L  R  R + LT++G  L
Sbjct: 6   DLDFFSTVARSPSLAAAARELDVTPSAVTQRLQELERRLGVRLVDRSGRHIALTDEGELL 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  ++      L       +G LR+      G+  +   +  F   +P + I L
Sbjct: 66  ASRGRILADEIAELTETLSARGGAVAGHLRVVAPFGFGRAYIAPVVATFQRAHPAVTIDL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L ++    +    D A+ + + +  SS + R L        AAP YL+    P   ++L
Sbjct: 126 MLSDRRGKATDHSWDVAVHIGE-MPESSFVTRPLAANDRVLCAAPDYLQRHGIPEVPRDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
             H  I   +            A    P  + RI   L  N    +  + + G GI +  
Sbjct: 185 LVHRCIALRENDEDVTLWR--FARRGTPATQVRIEPVLASNDGDVVRAWALSGEGIIVRS 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ V D+     LVR+++    P   V          + +  AF   +
Sbjct: 243 EWSVADDLHTGRLVRLLDGYALPDAPVVALIGPRKGRSARTTAFVRAL 290


>gi|254489583|ref|ZP_05102785.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214041753|gb|EEB82394.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 291

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 129/293 (44%), Gaps = 8/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW   R F  V  SGS + A   L ++Q S+SR I  LE  +G KLF R  RG++ TE  
Sbjct: 6   DWTLYRTFAAVLDSGSLSGAGRLLGMTQPSVSRHIDLLEAALGSKLFLRTHRGMSPTEAA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++     ++              + + +G +RI+ T  +G   L   L      +P ++
Sbjct: 66  ERIRPHV-DILTASSAAIKRAASRTSEVAGTVRISATEVVGTEYLPPILATIRRAHPALE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L L N   D+    AD AIR+ +P Q S L+ ++L  + +  YA   YL     P+S+
Sbjct: 125 IDLSLSNFVEDLLQRQADIAIRMTEPKQLS-LVTQRLRDLEVGLYAHRDYLARRGVPVSM 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+LI F                + +         L+ +S ++       G GI  
Sbjct: 184 AELLDHDLIGFDTQTAAARALAQRYPALSQAAF-----ALRTDSNIAQYAAIKAGFGIGP 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             + + +  P+LVR++ D+   S  ++    E L+ T   +A  + + L  R+
Sbjct: 239 CQEPLARRTPSLVRVLPDISASS-GIWLVMHEDLRATAVCRAVFDALELGLRN 290


>gi|170700785|ref|ZP_02891777.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134312|gb|EDT02648.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 301

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 129/297 (43%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S++ + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDRLDGVTTFVQVVESGSFALAAERLDMTRSAVGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +  GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALSELEAAEADLDCGRNEARGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D+  +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDLVEEGIDLAVRIGTLADSTSLAVRRLGTQYGSLGAAPSYLARYGMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H  I +       ++ +   A     +       L  +   +I      G G
Sbjct: 181 QSLDDLRNHRTIAYSR--SGVVQPWYLRAPDGSAVHIDMPHQLSFDDVQAIAAAGAAGFG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP +++        +V +++        ++  +P+      K +   + +    
Sbjct: 239 IAWLPSWLLDHYVKRGEMVVVLDRCFVCEGDIHAIWPKTRYLPRKTRCVIDALVQAV 295


>gi|330448114|ref|ZP_08311762.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492305|dbj|GAA06259.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 312

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 132/301 (43%), Gaps = 14/301 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            DK+  F  V R  S T AA+Q  +S S+ SR I+ LE  +G+ L  R  R +T T+ G 
Sbjct: 2   LDKIVFFLHVVRCHSLTDAAKQYGISPSAGSRWITELEECMGVSLVKRTTRKITPTQAGD 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L R  S +  ++     E+Q    +  G ++IA+T    ++ L   + E+L   P+I  
Sbjct: 62  LLFRQFSHINTQITDVVNEIQNLGNEDIGTIKIASTPLFAKHFLSQIIGEYLSDNPNISF 121

Query: 125 QLILDNKDIDISMDYADCAIRL-----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +I    ++D   +  D AIR          + S L++R L +  + A  +P Y++   E
Sbjct: 122 VVIETAFEVDNVHE-VDFAIRANATYRGFQDKDSLLVKRSLFSEPLKACCSPRYIQRYGE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P+   +L +H  +    L+        W+   +      +I   ++ +    +    + G
Sbjct: 181 PIVPNDLKQHLCLFATTLVGGN----KWIFEQNGEYNSVQIPRTVEADDSEILKNIALAG 236

Query: 239 SGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIA LP  ++        L+ ++ + ++  F +   Y        +   F++++ ++  
Sbjct: 237 GGIAYLPLSLIHQELKENRLISVLNNYVSSDFELSLYYKPRKYMPARCANFKDYLLMRVE 296

Query: 296 D 296
           +
Sbjct: 297 E 297


>gi|241203171|ref|YP_002974267.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857061|gb|ACS54728.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 293

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 136/292 (46%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P++
Sbjct: 61  GEVFLASAERMETEMLAAQASLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P +   L+  KL    +  YA+  YL     P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERP-EQGRLVSSKLTDYTLGLYASRAYLAAQGTPAD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSG 240
           I  L  H  I +       +ED  + A+++      R   +  ++++ +   +    G+G
Sbjct: 180 IDALKAHRRIGY-------VEDLIFTASLNFSGAVMRSWDAGFEISTAIGQTEAVRTGAG 232

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I +L DYI +  P L RI+ +V       +  Y E  ++  ++++  +F+  
Sbjct: 233 IGILHDYIARQYPELQRILPEVSI-RRAYWTTYHETARDLLRVRSVADFLQE 283


>gi|149376184|ref|ZP_01893949.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
 gi|149359589|gb|EDM48048.1| transcriptional regulator, LysR family protein [Marinobacter
           algicola DG893]
          Length = 297

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 137/298 (45%), Gaps = 8/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR+F   A S SF  AA +L +S  +++R +  LE   G  LF+R+ R + +T
Sbjct: 1   MLNRLEMLRIFCTAAESRSFKEAANRLGISPQAVTRAVKELERLQGELLFHRNTRHIQVT 60

Query: 61  EQGSKLHRVTSEVYHKLETT-QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G K   +  E    ++   Q    +S  +  G++RIA  +  G   L   L E   ++
Sbjct: 61  LVGEKFAAIAKERLRAVDELFQTSAPDSGNELQGRVRIAAPVGFGHQCLMPALMELSTVH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I L L ++ +D+  +  D  IR+   ++ S  I R+L  I+++  A+P  +     
Sbjct: 121 PQLDIDLTLSDERVDVVDEKIDIGIRIGF-MRDSRFIARQLAKINLYVVASPDLIDRVGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P SI++L+   +    D      + + W+ ++DR    P I+  +     + +     G 
Sbjct: 180 PASIEDLNHLPVTGLVD--RNTGKLWPWVFSMDRQ-WMPSITRFRSADAEAELMGVQNGL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G A +PD++ +D      LVR++E+     + +Y   P+      +++   + +  + 
Sbjct: 237 GFAQIPDFLAQDLLRQEKLVRVLEEAEPVPWDLYIYRPQRGPVPQRIRLVFDHLVSRL 294


>gi|319793068|ref|YP_004154708.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595531|gb|ADU36597.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 315

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S  +AA++L ++  ++S+ I  LE  +G+ LF R  RG+ LT+ G 
Sbjct: 9   LNALRAFEASARHLSVKNAADELCVTPGAVSQLIKTLEVHLGVPLFRRVNRGIFLTDAGQ 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +     + +G L ++ T       L   LK F   +PDI +
Sbjct: 69  AYLPPVRNAFRQISDATRRV--VVPEDTGILTVSVTPFFASAWLVPRLKGFQDAHPDIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  +   D S D  D AIR     +   L  ++++T+ +   AAP  +K    P +  
Sbjct: 127 QVVSSSALADFSRDGVDVAIRHGLG-RYPGLSSQRVLTVEIVPVAAPALVKRLGMPETPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +   +   +     +    WL         P       +    +++  + G G ALL
Sbjct: 186 GLVRWPRVNDAERKAWAL----WLQAQGIESTGPTRGP-SFDDSGLLLKAVLAGQGAALL 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +V D+     LV++ +      F  Y  YPE   +  K+ AFR +I  +A
Sbjct: 241 PAAVVADDLAQGRLVQLSDVTWLEDFAYYLVYPENSHDRPKVAAFRGWILGEA 293


>gi|167616751|ref|ZP_02385382.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257143238|ref|ZP_05591500.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 290

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 4   LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G L + T        L   L +     P + ++++
Sbjct: 64  AAVRQSLDALRVATADIRSRRA--NGTLTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 121

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   D+AD AI              +L    +    +P +     +     +L 
Sbjct: 122 TS-QDIDPQRDHADVAILFGAG-DWPGCTSTRLFQERVTPVCSPAFRAAHADIAQPADLL 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 180 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 239

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 240 LVDTPVAAGQLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 286


>gi|114776696|ref|ZP_01451739.1| transcriptional regulatory protein [Mariprofundus ferrooxydans
           PV-1]
 gi|114552782|gb|EAU55213.1| transcriptional regulatory protein [Mariprofundus ferrooxydans
           PV-1]
          Length = 297

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 121/294 (41%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LR F    R  +   AAE+L ++ S++S QI GLE ++G+KLF R   GL LT+ G
Sbjct: 9   SLNALRAFEAAGRHLNLRAAAEELFVTPSALSHQIRGLEEQLGVKLFVRQRHGLELTQSG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    +  + +L      L+   +   G L ++             L  F   +P I+
Sbjct: 69  KQLLPELTAGFSRLVEAVAALR--PIHHPGILTVSMLSTFAMRWFIPRLHRFQQAFPHIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++    + +D   +  DCAIR  +          +L+        +P  +   R     
Sbjct: 127 VRISTSIELVDFEQEGVDCAIRSGQG-DWPHTASLRLLDEQFAPVCSPSLITAERPLARP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L ++ L+       +  +   WL+    P        L   +    +   V G G+A+
Sbjct: 186 ADLAEYTLLHSNQ---RPDDWRIWLSAEGLPELV-GAQQLHFETRNFAIAAAVRGLGVAI 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +   +V++   +  L++     +      Y  + E  K+T +L AFR ++  +A
Sbjct: 242 VDPLLVQEELKDGRLIQPFTHAVPTRSAYYLVWSERRKDTPELAAFRQWLVEEA 295


>gi|317407048|gb|EFV87068.1| hypothetical protein HMPREF0005_05830 [Achromobacter xylosoxidans
           C54]
          Length = 296

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 131/301 (43%), Gaps = 14/301 (4%)

Query: 1   MSFDWDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  + D++R   +F  VA  GS T AAE   +  S++SR+IS  E+++G+KL +R  R L
Sbjct: 1   MKKELDRMRDMALFVQVAALGSLTRAAESTGVPASTLSRRISEFESQIGVKLLHRSTRRL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LT+ G +     ++V  +      EL+E   +P+G LR+   +D      +  L ++  
Sbjct: 61  ALTDIGQRYLERITDVVDRARAISGELEEEMGRPTGHLRVCAPVDFNAYFPEAALADYCA 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P ++ +L    +  D++ +  D  I   +P Q+S +++R++       YAAP YL+  
Sbjct: 121 SHPGVRFELHCSAQLPDLATEPYDICIATTEPPQASRMVRRRIGMAEYQLYAAPAYLRAY 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P    EL +H  +   D           L   +          L +N+ L++      
Sbjct: 181 GVPAHPAELARHRCVVMPDSESGLA-----LTDGNASAQVALAPLLVLNNQLAVENLLRD 235

Query: 238 GSGIALL----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI  L     D +V++   L  ++     P   +            +++ F + +  +
Sbjct: 236 GLGIGPLTRGRADALVRE-GALAPVLPGWTLPPRPILALTAS-RALPARVRGFIDLLVAR 293

Query: 294 A 294
            
Sbjct: 294 V 294


>gi|207721361|ref|YP_002251802.1| transcriptional regulator protein [Ralstonia solanacearum MolK2]
 gi|207723605|ref|YP_002254003.1| transcriptional regulator protein [Ralstonia solanacearum MolK2]
 gi|206586520|emb|CAQ17107.1| transcriptional regulator protein [Ralstonia solanacearum MolK2]
 gi|206588807|emb|CAQ35769.1| transcriptional regulator protein [Ralstonia solanacearum MolK2]
          Length = 294

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 135/286 (47%), Gaps = 7/286 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  VAR+ +   AA++L + Q+++ R+I+ LE E+  KLF R +  L LT  
Sbjct: 1   MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLALTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      + H   T +  +  +  + +G +R+ATT  L    +   + +  L +P I
Sbjct: 61  GEALIGPAEAMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +      +++   AD A+R  +P  +  LI R++ TI    YA+  YL+   EP+ 
Sbjct: 121 DIVCLASKSIANLTKREADVAVRTLRP-TAPDLIARRVATIETGLYASRGYLRARGEPVE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+ +    P+    + W A    P+   R+  LQ +S ++I +  + G GI+
Sbjct: 180 GSAFAGHDLVLY----PRNEVPWMWEALCGEPVAPSRV-VLQSSSAMTIFEAVIAGIGIS 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            L       +P LVR++         V+      L  T +++A  +
Sbjct: 235 ELVCCRADPHPELVRVLP-HRRRMQDVWLVTHADLHKTARVRALMD 279


>gi|53724361|ref|YP_104709.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67640368|ref|ZP_00439177.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|254201806|ref|ZP_04908170.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254207135|ref|ZP_04913486.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|52427784|gb|AAU48377.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|147747700|gb|EDK54776.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147752677|gb|EDK59743.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|238521068|gb|EEP84522.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
          Length = 306

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +  +L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVVFENRIEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPGFAATHGMPTE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    +IT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLE--PTLISENFLFLRQAILAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++PDY+V D+     +V  ++      F   +Y  Y     +T     F +F+  +AR+
Sbjct: 237 IVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEEARN 295


>gi|219848810|ref|YP_002463243.1| LysR family transcriptional regulator [Chloroflexus aggregans DSM
           9485]
 gi|219543069|gb|ACL24807.1| transcriptional regulator, LysR family [Chloroflexus aggregans DSM
           9485]
          Length = 301

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 126/297 (42%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   LR F  VAR    T AA +LH++Q ++S+QIS LE E+GI LF R  R L LTE 
Sbjct: 1   MELRHLRYFEAVARHSHVTRAAAELHIAQPALSKQISQLERELGITLFDRVGRSLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      V  ++E  +  + E     +G++ I     +G +LL   L  F   YP I
Sbjct: 61  GEALLPYARAVLAQVEEARAAMAERVGLKAGRVAIGAPPTVGAHLLPPLLTAFHQRYPGI 120

Query: 123 QIQLILD--NKDIDISMDYA-DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            ++L        +D+      D A+ +  P+   +L    L+   +    +PH+    R 
Sbjct: 121 TLRLHEAGIQSLLDLLESGLTDLAV-VALPVSDEALTVTPLLNEPLVLIVSPHHPLAGRN 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +++ EL     I    L P   E         R  G    + ++     +++++   G 
Sbjct: 180 EVAMAELRNERWI----LSPASYELREATLKACRDAGFTPQTVMEGGETETLVRFVAAGL 235

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIAL+P   V     +V +     T + ++   +      +   +A R F+  + + 
Sbjct: 236 GIALVPALAVAGFHGVVSLTICDQTLTRSLGLVWRSDRTASPAARALREFLVSELQQ 292


>gi|170742041|ref|YP_001770696.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196315|gb|ACA18262.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 301

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 143/293 (48%), Gaps = 6/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FDW+ LR F  VAR+G  T AA+++ +  S++SR++S LE+ +G +LF R   G  LT 
Sbjct: 3   DFDWNDLRAFLAVARAGRLTVAAQRMGIDHSTLSRRLSALESALGTRLFGRRPSGFVLTS 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +     T +  L E+S + SG +R+ T    G   L   L +     P 
Sbjct: 63  DGERLLGDAERIESVAITLRARLDEASHQVSGTVRVGTPEAFGTTFLAPRLAQLFAAQPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L+ + +   +S   AD A+ L +P ++  L  RKLV   +  YAA  Y +      
Sbjct: 123 LEIELVANPRSFSLSKREADLAVTLTRP-ETGRLFARKLVDYALGLYAARSYAEAAEAIR 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L +H  + + + +    E  N+L  V   I        ++++ ++ M+    G+G+
Sbjct: 182 TVDDLHRHRWVGYVEDLLWTSE-LNYLPQVSSAIHPQA----RISNVITQMEAVRGGAGL 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +LP ++ + +P+L+ ++   +      +       ++  +++    F+  +A
Sbjct: 237 GILPHFLARGHPDLIAVLPQEVRIVRAYWLIAHADTRDLPRVRLVSEFLTRQA 289


>gi|27377385|ref|NP_768914.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27350529|dbj|BAC47539.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 296

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 12/294 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D ++LR F  VA +G  + AA +L +S+S +SR++  LE+E+G++L  R  RG  LTE
Sbjct: 5   KVDIEELRTFVEVADAGGVSPAALRLGVSKSIVSRRLLRLESELGVQLLARTTRGAALTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G       + V  +++  +  +  +  +  G+LR+A  +  G N     + E    +P 
Sbjct: 65  AGVTFRDYAARVCTEIDVAKETILPA-GELRGRLRVAVPLSFGSNYFAPMMAEMARRHPQ 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI     ++ +D+     DCAIR+   +Q S+LI +++  I+    A+P Y+K    P 
Sbjct: 124 LQIHTCYSDQFVDLIAGGYDCAIRIGY-LQDSNLIAKRVGPIYGKFVASPGYVKEHGSPE 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + +EL  H  +  G    + M+        D+ I        + ++  ++      G GI
Sbjct: 183 TPEELVAHQALMQGTETWQLMDG-------DKIITVRPQGRFKADNGTALAAAAAAGLGI 235

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A LPD++  +   +  LV +M     P    Y   P       K++     +  
Sbjct: 236 AYLPDFLTNELLASGALVSVMTRHPPPPAGAYVIRPPGQHPARKIRVLTELLIE 289


>gi|299770523|ref|YP_003732549.1| transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700611|gb|ADI91176.1| transcriptional regulator [Acinetobacter sp. DR1]
          Length = 296

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 130/296 (43%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT 
Sbjct: 1   MDRLDCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLTRTTRQMNLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K ++ +  +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP 
Sbjct: 61  CGEKFYQHSKVILSEFEWAAYEISYNQQYPEGELKLNTPMSFSNIFLQNIISDFIEKYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREP 180
           I+I L + ++ +D++ +  D  IR+       +L   K++ T   + YA P Y      P
Sbjct: 121 IKIDLFMTDQLLDMNNNKFDLTIRVDG--SPPNLANSKILNTYQRYLYATPEYFNQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL  H  + +          F       + +       +  N+   ++  C+   G
Sbjct: 179 ASLEELKDHKFLIYYQDSRHKKLIFQ---KDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+  +
Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFLTHQ 291


>gi|206578117|ref|YP_002240514.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206567175|gb|ACI08951.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 272

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 8/267 (2%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    L +F  +   GSF+  A Q  L+ S++SR +S LE E+G KL +R  R L L
Sbjct: 1   MNLNLLPDLALFVQIVDQGSFSAVARQSGLTPSAVSRSVSRLEREMGSKLLHRTTRKLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           ++ G  +++   ++                   GKL ++    +G+ ++   +  F   Y
Sbjct: 61  SDAGETVYQHAQQMLEAARQAIDSASSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + L L+++ +D   D  D A+R+     S  L  + L+ I     A   YL+    
Sbjct: 121 PQVDVCLRLEDRPLDFIDDGIDLALRITD-TPSPGLHGKPLMPIRHVICATEPYLQQHGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + Q+L  H  I+ G+        F       +            N     +       
Sbjct: 180 PYTPQDLRAHCCISLGETPADARWKFR---REGKSETVQTYGRYAANHTAVRLDAVKQHL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVI 263
           GI  LP +  ++     ++V+++ +  
Sbjct: 237 GIGSLPLFTAREALAKGDIVQVLPEWE 263


>gi|254189556|ref|ZP_04896066.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157937234|gb|EDO92904.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 309

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 122/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 5   NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 65  NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 125 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYARRHAVPRHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++     +R +       L+V S L   Q  + G+GI+ 
Sbjct: 184 DDLPGSHWIGHGGLANLS---YSVFGNEERSVRIQTPGRLKVKSVLLAHQMALAGAGISA 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 241 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 287


>gi|262278791|ref|ZP_06056576.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259142|gb|EEY77875.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 296

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 130/296 (43%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT 
Sbjct: 1   MDRLDCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLKTTLLTRTTRQMNLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K ++ +  +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP 
Sbjct: 61  CGEKFYQHSKVILSEFEWAAYEISYNQQYPEGELKLNTPMSFSNIFLQNIISDFIEKYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREP 180
           I+I L + ++ +D++ +  D  IR+       +L   K++ T   + YA P Y      P
Sbjct: 121 IKIDLFMTDQLLDMNNNKFDLTIRVDG--SPPNLANSKILNTYQRYLYATPEYFNQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL  H  + +          F       + +       +  N+   ++  C+   G
Sbjct: 179 ASLEELKDHKFLIYYQDSRHKKLIFQ---KDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+  +
Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFLTHQ 291


>gi|89095008|ref|ZP_01167937.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
 gi|89080716|gb|EAR59959.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
          Length = 304

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 136/286 (47%), Gaps = 15/286 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VAR GSFT A+++L LS+S+IS+QI  LE E+ ++L  R+ RG+ LT+ G  L 
Sbjct: 14  LLIFAEVARQGSFTGASKKLGLSKSAISQQIKRLEAELDLQLLARNTRGVVLTQVGETLL 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +  +L     ++Q+   +PSG  RI+      +N++   L +  L YP I+ +L+
Sbjct: 74  ARSELLSEQLANAVNDIQKVKDQPSGTFRISLPPFFERNIIVPALHQLCLEYPLIKPELV 133

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  +  D+     D AI     ++ S+   + +  +     A  +YL+    P S+ +L 
Sbjct: 134 VTGRWQDLIEHQLDAAI-FGGTLKDSNYKAQSIGKVRDLFCATANYLQRNSTPESLDDLT 192

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ----VNSYLSIMQYCVLGSGIAL 243
           +H  +             + L  +D+      +  L+     N+  ++++  +   GIAL
Sbjct: 193 EHKYLA-------SHWQNHKLTLIDQRNSTDLLFSLEHYALTNNLTTLVEMTLSDMGIAL 245

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
           LP+++ +      +LV ++ D     +  YF +         ++ F
Sbjct: 246 LPEFVCQQEINRGDLVHLLPDYHGRPWHFYFLHRYQSNKPAYVERF 291


>gi|88799855|ref|ZP_01115428.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
 gi|88777435|gb|EAR08637.1| transcriptional regulator, LysR family protein [Reinekea sp.
           MED297]
          Length = 296

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 135/300 (45%), Gaps = 17/300 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M ++   L VF  V + G  + AA +L L +SS+SR I+ LE ++ I+LF R++R + LT
Sbjct: 1   MQWNIADLPVFAAVVQHGGISSAARELRLPKSSVSRFINRLEQDLNIRLFERNSRQMRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   ++    +  ++E+   ++   +  P+G+L ++  +   + ++  +L EF   YP
Sbjct: 61  QEGEIFYKHAQLILEQVESADAQMNGLNATPNGELTVSLPMAFSRLIVSKHLAEFHRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ + ++ K +D+  D+ D A+++ + +  S  I   L++  +   A P   +   + 
Sbjct: 121 HVRVYITVNPKPVDLIGDHIDIAVQVGE-LPDSDYIAVPLISHRLIWVAHPEIARRYGQ- 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI----SCLQVNSYLSIMQYCV 236
             + +L      T  D +  C   +N      R  G        + ++ +  + I     
Sbjct: 179 --VDDLS-----TLNDAVHICEARYNQTPLAIRHKGSRDSITLNAAIETSDPIMIKDSIQ 231

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFL 292
              GI LLP    K+   +  LV++ ED            Y      + + + F  F+  
Sbjct: 232 QKLGIGLLPSIYCKEELADGRLVQVAEDFELLENAKASAVYTSKRMLSARTRVFIEFLKE 291


>gi|317052981|ref|YP_004119335.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953308|gb|ADU72779.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 303

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 125/296 (42%), Gaps = 15/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +   V  +G    A  +++LS +++S ++  LE     + F+R  R ++LT  G 
Sbjct: 4   LEDLTLLVQVVEAGGLAAAGRRMNLSPATMSARLKALEERYQTRFFHRSTRAISLTRVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + ++    V  ++E  + +L +     SG LRI+   D G+  L   L  F  L+P ++ 
Sbjct: 64  EFYQSALRVLEEMEQAEAKLAQQEGVLSGTLRISAPSDFGRQYLSPALLAFSRLHPGVKS 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L  +  D+     D +IR    +  S+LI+R +   H    A+P YL     P    
Sbjct: 124 TLLLSEEIEDLIAQRLDMSIRFGN-LPDSNLIKRDIKPNHRVLVASPAYLATQGAPGHPL 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243
           EL +H  +       +      W   V   +    IS  +  +    I ++ + G+GIA 
Sbjct: 183 ELPQHRCLIMEQ---RGSLLNVWRFAVAGEVRTLEISPAMITDDGALIREWVLAGAGIAS 239

Query: 244 LPDYIVKDN---PNLVRIMEDVI-------TPSFTVYFCYPEALKNTGKLKAFRNF 289
              + VK +     LV +  D         +    + F YP+      ++ AF +F
Sbjct: 240 KSWWDVKRDVEQGKLVVLFGDHFIGFSRNDSHQVGLQFVYPQRRFQPLQVAAFSDF 295


>gi|330957374|gb|EGH57634.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 316

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 112/292 (38%), Gaps = 6/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              +D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LTE
Sbjct: 7   DMSFDLLRAFEVAARLRSFTAAALELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++    + E        L++AT        L   L  F  + PD
Sbjct: 67  AGEILFSHVQAGLQSIDSGLTAITEQHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+             R L +  +    +P  +   + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESRWLFSEEVFPVCSPQLIAGRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNDALRDFPLLHLRGESINNWFDWAGVFRALDIPQAPAPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+   ++V    D   L R +          Y   P+  +    ++ F +++
Sbjct: 244 AIGWKHLVDDLLDQGLLCRPIAGAAISGHGYYVVLPQRKRRVQIVQQFMDWL 295


>gi|163759014|ref|ZP_02166100.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
 gi|162283418|gb|EDQ33703.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
          Length = 293

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 134/299 (44%), Gaps = 19/299 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FD   L  F  VA   SF+ AA+ L +++ ++SR I+ LE E+GI+L +R    + L+ 
Sbjct: 4   PFDLRLLTTFAAVAEHQSFSRAAKALGVAKGTVSRTITQLEAELGIELVHRTTHHVALST 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+  T      L+T+   L E   +PSG LRIA   + G  +L   +  F   +P+
Sbjct: 64  AGAALYERTRGHLSALQTSVSNLPELEDEPSGLLRIAAAPEFGVLVLPAIISAFSQRFPN 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++  + L   + D+  +  D AIR+    ++ S+L  R++       YAAP Y+     P
Sbjct: 124 VRFDIRLSTDNADLVREGYDLAIRVATGSLKDSALKMRRIARGTTAFYAAPAYIARQGRP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + E  +H+ +    ++     D + +                V+ +         G G
Sbjct: 184 KRLLE-KRHSWVLHAGIVQLLKLDADGVQYC-------------VDDFFLARDLMREGVG 229

Query: 241 IALLPDYIVKDN---PNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + LLP ++ + +     L  + +++       +   YP + +   K+ AFR+F+    +
Sbjct: 230 VGLLPTFMARSDLKEGLLEEVSLQEPHVLFGDLVVLYPSSGQTPKKVTAFRDFLVETLK 288


>gi|66046282|ref|YP_236123.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256989|gb|AAY38085.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 298

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 123/297 (41%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  V  +  F  AA     S SS+S  I  +E  +G++L  R  R +  T
Sbjct: 1   MTTDIQDLLAFVAVVNARGFREAARLSGKSASSLSDAIRRMEARLGVRLLNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L         ++E+    + +   +PSG LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGARLMERIVPALGEVESALDVVNDFRDRPSGTLRLNVPVSAARLVLPSIITPFLQTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++ +   +D+     D  IR  + ++   +I   +          A+P YL+   
Sbjct: 121 DIRLEVVTEESFVDMLAAGCDAGIRYDERLEQD-MIAVPIGPRFQRFATAASPAYLQARG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCV 236
            P   ++L  H  +  G      +  + +    D    +P   ++     ++   +Q  +
Sbjct: 180 RPEHPRDLLAHACLR-GKFPSGVIPLWEYERDGDTVKVDPTGPLTVRIGGAFDLTVQAAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+  L +  ++   D+  L  I+E         Y  YP        L+AF +FI
Sbjct: 239 DGLGVVHLFEDWLRPHLDSGALEPILEPWWQRFTGPYLYYPGRRYLPSPLRAFIDFI 295


>gi|288958304|ref|YP_003448645.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288910612|dbj|BAI72101.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 300

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 143/292 (48%), Gaps = 7/292 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++RVF  VA  GSF+     + ++ SS ++ +S LE  +G++L  R  R L LT +G   
Sbjct: 8   EMRVFLRVAAQGSFSATGRDVGMTPSSTAKLVSRLEERLGVRLVERSTRKLRLTVEGDLY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               + +  +L+    E+   +  P+G +R+  ++  GQ+ L   L EFL  +P I + +
Sbjct: 68  RERAAALLGELDALDAEVAGGARAPTGLIRVNASVPFGQHCLLPLLPEFLHAHPGITLDV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            + ++ +D+     D A R   P+  S+L+ ++L  +     A+P YL+    P+S  +L
Sbjct: 128 TMTDEVVDLYAARVDVAFRAG-PLSDSALLAQRLGVVRRLIVASPAYLERRGVPMSAADL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           + H+ + F       +     L +  R +     + +  N+  ++    +LG G+A L D
Sbjct: 187 EAHDCLGFNFRRAAAVWP---LKSGGRLVDREVPTRILANNGETVRHMALLGLGLARLAD 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           Y V+D+     LV ++ED +  +  ++  Y    +   +++AF + +  + R
Sbjct: 244 YHVRDDLREGRLVAVLEDALVDTEEIHAVYTGRDRAPRRVRAFLDHMAPRMR 295


>gi|254471263|ref|ZP_05084665.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211959409|gb|EEA94607.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 299

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 15/291 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+ LR F  VA  GSFT A+++  LS++S+S+Q+S LE ++ ++L YR  R L LTE G 
Sbjct: 6   WNGLRSFLAVAEHGSFTLASDETGLSKASLSQQVSQLEEQLDVQLLYRTTRKLRLTEIGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLG-QNLLQGNLKEFLLLYPDIQ 123
           + + +      ++E       +++   +G +R+     L  + L+   + E+    P I+
Sbjct: 66  RYYEMCRAGVKQIEDASDLASQATDSLTGPIRMNAVGGLIGEELIAPLVIEYQQANPGIE 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   +   D+     D  +R+   ++ S+LI RKL TI     A+P ++    +    
Sbjct: 126 VKLDFSSIREDLLETDFDLVLRMGD-LEDSTLIARKLHTITTRYVASPFFVAAHSKIRHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIA 242
            +L     I+             W+ T  +     +     Q+++   + Q  V G GIA
Sbjct: 185 SDLKGLPFIS--------GSVQEWIFTRGQERIVVQAEKGFQISNGRVMCQAAVAGLGIA 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L D           L  ++      +  ++   P       +++   N++
Sbjct: 237 RLADVYTDAPIKRGELTEMLSGWKQTT-PLWLVSPPTRHQLHRVRELMNYL 286


>gi|186470377|ref|YP_001861695.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196686|gb|ACC74649.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 300

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 139/303 (45%), Gaps = 9/303 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AAEQL  + S  SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKVTLDELQTFATVVDTGSITAAAEQLEQTVSGASRTLARLEEKLQTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   E+   +E  + +L     +PSG+LR+        +++   +  +   YP
Sbjct: 61  EEGKAFLQNAREIIDAVENAEEQLAARRERPSGRLRVDAATPFMLHVIVPLVAGYRERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R + +  +   A P YLK    P
Sbjct: 121 QVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRPVGSSRIRVLATPAYLKAHGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L++H+L+ F    P+ +  +  +   + P        +  +S  ++ Q  +  +G
Sbjct: 180 KRVEDLERHSLLGFTQ--PEALNVWPLVGADNEPYRI--NPSIASSSGETLRQLALESAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           I  L D++    +    LV++           +   Y      + ++ +F +++   A+ 
Sbjct: 236 IVCLSDFMTGRDRREGKLVQLFARQTQDVRQPINAVYYRNTAISARIASFVDYLAEAAKT 295

Query: 297 WKF 299
            +F
Sbjct: 296 TEF 298


>gi|213968414|ref|ZP_03396557.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301384298|ref|ZP_07232716.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060140|ref|ZP_07251681.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato K40]
 gi|302130413|ref|ZP_07256403.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926702|gb|EEB60254.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 316

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 114/295 (38%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LTE
Sbjct: 7   DMSLDLLRAFEVAARLRSFTAAAIELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  L PD
Sbjct: 67  AGEILFSHVQAGLQSIDSGLIAITEQQQHE--VLQVATDFAFVAYWLMPRLHRFHKLNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+             R L +  +    +P  + + + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESRWLFSEEVFPVCSPLLIADRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNDALRDFPLLHLRGDTINNWFDWAGVFRALDIPQAPAPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWKHLVDDLLDQGLLCRPIAGAAISGHGYYVVLPQRKRRVQIVQQFMDWLASE 298


>gi|83718066|ref|YP_440050.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651891|gb|ABC35955.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 299

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 13  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G L + T        L   L +     P + ++++
Sbjct: 73  AAVRQSLDALRVATADIRSRRA--NGTLTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   D+AD AI              +L    +    +P +     +     +L 
Sbjct: 131 TS-QDIDPQRDHADVAILFGAG-DWPGCTSTRLFQERVTPVCSPAFRAAHADIAQPADLL 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 189 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 248

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 249 LVDTPVAAGQLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 295


>gi|149201380|ref|ZP_01878355.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
 gi|149145713|gb|EDM33739.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
          Length = 293

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 121/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYNVARIGTVSGAAEVLGVHHATVIRHIDALEERLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       ++      SG+L + +   L  +LL   L  F  +YP + 
Sbjct: 63  EDLLRVAQATDDQFNQLAGRIKGQGNDVSGELVVTSVGGL-SHLLVPVLAAFQEMYPALV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +  ++   +    A  AIR          + +         YA+  Y+     P   
Sbjct: 122 VRYLTGDRLFRLEYGEAHVAIRAGAVPDQPDNVVQPFFQQQFTLYASESYVARHGLPKGP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H  +   D   +      WL   D   GE  +   +     +     + G+GI  
Sbjct: 182 EDLPHHRFVGADDPKTRA-PFLRWLQ--DNVPGEAIV--FRSGDVHAQRNAILAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                  + P L+++       +  ++      L  T K++AF N +  +A  W
Sbjct: 237 TSVLQAAEMPGLIQVTPPRPEWAAPLWLVTHMDLHRTTKVQAFLNHLKERAAAW 290


>gi|114800127|ref|YP_760066.1| LysR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114740301|gb|ABI78426.1| transcriptional regulator, LysR family [Hyphomonas neptunium ATCC
           15444]
          Length = 302

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 9/296 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+ +   WD +R F  V   GS + AA  L L+Q ++SR I  LE  +G  LF R  RGL
Sbjct: 1   MNIEAGSWDHIRSFLAVLEEGSLSRAARVLSLTQPTLSRHIDQLEATLGGPLFTRSPRGL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             T++   +      +             ++ + +G +RI+ +  +G  LL   L     
Sbjct: 61  IPTDKARMIEPYARTIAASAAAMARAASGAAGEMTGAVRISASEVVGIELLPEMLAPLRE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP +  +++  N+  D+    AD A+R+ +P Q  +L+ RK+  + +  +A   YL+  
Sbjct: 121 AYPGLTFEILPTNQSSDLLRRDADIAVRMVRP-QQGALLARKVGDVMLGLFARRDYLEKY 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P S++++  H LI F               T+DR          + +S L+       
Sbjct: 180 GTPRSMKDVAGHALIGFDHETISVQALRGMGLTLDRASF-----AWRTDSDLAQTNLIRA 234

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+GI +    + + +  LV+++ +  T     +    E LK   ++KA  + +   
Sbjct: 235 GAGIGVCQAGLARRHGALVQVLPEDFTFPMETWVTMHEELKGVTRMKAVFDHLSEA 290


>gi|89056235|ref|YP_511686.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88865784|gb|ABD56661.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 304

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 110/286 (38%), Gaps = 6/286 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++  F  V  +GS   A++ ++++ S+I R+I  LE  +G+ L  R + G  LT +G 
Sbjct: 4   LAEIECFIAVVDAGSQLAASKTMNIAVSAIHRRIKDLEARLGVTLTRRTSHGTALTPEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    V   L            K SG +R+   I  G   L   +  F   +PDI+ 
Sbjct: 64  AYYQRCVSVVADLNEADARATGELHKASGLIRMTVPIAFGTRHLAPIMTSFSAEHPDIRF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L + +  +D+  D  D AIR+    Q   L   +L  +     A+P + +    P S +
Sbjct: 124 ELNISDHHVDLLEDGYDLAIRIGGD-QKPQLGAVELFKVQYALTASPAFWETHGLPQSPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     + +          F            P       N+   +++    G G++L 
Sbjct: 183 DLVGLPTLVYRAGAVPSYWPFR--NKAGEVSKIPIQPRYIANNGEFLVEAAKAGLGVSLE 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           P ++  +      LV  + +  T         P     + +++ F 
Sbjct: 241 PTFVCGEALQAGKLVAALTEYDTFDRAAQIVTPANRPLSFRVREFL 286


>gi|317404227|gb|EFV84665.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 326

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 128/300 (42%), Gaps = 5/300 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D    +R+F   A +GS + A  +L LS ++ S ++  LE+ +  +LF+R  R L L
Sbjct: 1   MATDRLGDMRLFVETAAAGSLSAAGRKLGLSAAAASARLIKLESALRARLFHRSTRQLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE+G             ++  +  LQ       GKLRI+ + D G+NLL+  L+EF   +
Sbjct: 61  TEEGRVYLAHCEIALRAIDDAEAALQAGQQAVRGKLRISASADFGRNLLKDWLEEFSAAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PD++I L L +   ++  D  D AIR  +P Q  +L+ R L        A+P Y+     
Sbjct: 121 PDLKIALTLSDSLSNLLHDDIDLAIRFGRP-QDGALVARHLAPNWRVLCASPDYIARRGA 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + ++L +H+ I          +              P     + N      Q+ + G 
Sbjct: 180 PRTPEDLARHDFIVLVTAAGPLNQFHFIKNETAVSFTVPLERAWETNDGALARQWAIAGH 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GIA    +   D+     L  ++ D       V+  +        +++   +F+  +  D
Sbjct: 240 GIARKTIWDAADDLRAGRLKVLLPDYRVSEDGVHAVFHGTRYMAPRVRRLLDFLVARFAD 299


>gi|257485573|ref|ZP_05639614.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330985712|gb|EGH83815.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011863|gb|EGH91919.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 316

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 113/295 (38%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LTE
Sbjct: 7   DMSLDLLRAFEVAARLRSFTAAAIELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  + PD
Sbjct: 67  AGEILFSHVQAGLQSIDSGLIAITEQHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  +   + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESHWLFSEEVFPVCSPQLITGRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNEALRDFPLLHLRGESSNNWFDWAGVFRALDIPQAPTPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWKHLVDDLLDQGLLCRPIAGAAISGQGYYVVLPQRKRRVQIVQQFMDWLASE 298


>gi|110681298|ref|YP_684305.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109457414|gb|ABG33619.1| transcriptional regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 304

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 6/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +SFDW+++R F    + GSF+ AA  L  +Q ++ RQI GLE  +G+ L  R  RGLTLT
Sbjct: 6   ISFDWNQVRAFLATVQEGSFSGAARVLKTTQPTVGRQIGGLEKALGVTLVERSVRGLTLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      +        +     S   SG++ +  T  L   +L   LK      P
Sbjct: 66  EAGRDLLEHMRTMGEAATLISMVADGKSQDVSGEVTVTGTDLLSAAILPRVLKPLRQTAP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+++++  ++  +++   AD AIR  +P Q   LI R L     + YAA  YL     P
Sbjct: 126 GIRVRILASSEMQNLTQREADIAIRHVRPDQ-PDLIARHLGDFRANLYAASDYLDRVGRP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + +++   + +   D           L  +  PI  P    +   + +   +    G G
Sbjct: 185 HTPRDVATLDFVGNADPERLMAP----LHNMGVPI-RPESFVMSSANGVVAWELVKAGYG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +++ P+ +   +P + R++ D  +  F ++      L+ + +++   + +
Sbjct: 240 VSMQPEALGDADPGIERVLPDFPSLEFPMWLVTHRELQTSRRIRVVFDLL 289


>gi|85706768|ref|ZP_01037860.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
 gi|85668826|gb|EAQ23695.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
          Length = 323

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 124/295 (42%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 33  NWDEVRTAYNVARIGTVSGAAEVLGVHHATVIRHIDALEERLGVKLFQRHARGYTPTEAG 92

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       ++      SG+L + T+I    +LL   L  F   YP + 
Sbjct: 93  DDLLRVAQATDDQFNQLAGRIKGQGNDVSGEL-VVTSIGGLSHLLVPVLAAFQHDYPGLV 151

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +  ++   +    A  AIR          + +         YA+  Y+     P   
Sbjct: 152 VRYLTGDRLFRLEYGEAHVAIRAGSVPDQPDNVVQPFFQQQFTLYASEGYVARYGLPKGT 211

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L KH  I   D   +      WL   D   GE  +   +     +     + G+GI  
Sbjct: 212 EDLAKHRFIGADDPKTRA-PFLRWLQ--DNVPGEAIV--FRSGDVHAQRNAILAGAGIGF 266

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
                  + P L+++M      +  ++      L  T K++AF + +  +A  W+
Sbjct: 267 TSVLQAAEMPGLIQVMPPRPEWAAPLWLVTHMDLHRTTKVQAFLSHLKERAAAWQ 321


>gi|150377388|ref|YP_001313983.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150031935|gb|ABR64050.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 314

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 126/297 (42%), Gaps = 11/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   +  F  VA + S + A+    L +S++S +I  LE + G++LF R    L LT+ 
Sbjct: 1   MDLSVIDCFVKVADARSISAASRLHRLPKSTLSHRIRQLEDQFGVELFVREGHQLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+L R   ++    +     + E   + +G LR+ +T + G  +    L  F + YP +
Sbjct: 61  GSELLRHARKIRTSCDDAATAMAEMHKEVAGTLRVGSTGEFGTTVTSELLYAFQMKYPQV 120

Query: 123 QIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + ++  +      D+S    D      +P      + R+L T     YA+P YL    +
Sbjct: 121 ILDVVFLSARQPFTDVSDMALDGIFHWGEP-SDVDYVSRRLATASYGLYASPDYLAQHDQ 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P S  EL +H  + F            +L+    P  E  + + L  N Y ++  + V G
Sbjct: 180 PASEAELARHRGLIFRSTTRLQPW---YLSRPGGPETEILLTAALTANDYWTLKYFAVAG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIA LP + V+    +  LV ++ +  +    +   Y      + + KAF  F   
Sbjct: 237 QGIAYLPGFFVETECQSGLLVPVLAEWRSRETAINLIYSRRRHVSRRFKAFVGFCVE 293


>gi|33601319|ref|NP_888879.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33575755|emb|CAE32832.1| LysR-family transcriptional regulator [Bordetella bronchiseptica
           RB50]
          Length = 319

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/282 (26%), Positives = 130/282 (46%), Gaps = 4/282 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  +AR GSFT AA  L ++QS++S+ ISGLE  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLYFVTIAREGSFTRAAALLGVTQSALSQAISGLEARLRIRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E+   EL +   KP+G +RI     + +  +   L   +  YPDI+
Sbjct: 65  ERLLNAIGHRFDEIESELDELTQLRDKPAGTVRITCGDHILRATILPRLTPLVREYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  ++    DI  D  D  +RL   I    +       + M   A+P Y +    P   
Sbjct: 125 LEFDVNYGFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPLRMAVVASPAYFEAHSTPGQP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +HN I       + +  +++L    R +       L  N+   +++  + G GIA 
Sbjct: 185 RDLLRHNCINMRMQSGRGVYAWDFLRR-GRRLNVRVDGQLIFNTTPPMVEAALAGLGIAA 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           LP+       +N +LVR++ED   P    +  YP   + +  
Sbjct: 244 LPEEEFAPHLENGSLVRVLEDWCEPFSGYFLYYPSRRQPSPA 285


>gi|171321362|ref|ZP_02910318.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171093360|gb|EDT38552.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 306

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 131/293 (44%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L++ + + Q  + +P G LR+        N L   +  F   +P 
Sbjct: 61  TAERIYERCAAVLDELDSLEAQAQSHTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L  + +D+  +  D  I +   + S + + R +  I +   A P YL+    P 
Sbjct: 121 VRLDVTLTERPVDLVGEGYDIGIVVPYMLTSETTVVRLVERIPVVIVATPAYLRAHPRPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L +H  +     + +    F         +  P    +  NS +   +  +   GI
Sbjct: 181 TPAALAEHAFVPLSPSLRRPALSFR---VDGDTLTVPLSFDVSSNSPVFNREMVMHDFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +V+    +  LV+++E  D++     +   Y        K+KAF ++
Sbjct: 238 GVVPRTLVEAELASGALVQLLEGADLVDAFVEIKLAYANRALLPAKVKAFIDY 290


>gi|16125369|ref|NP_419933.1| LysR family transcriptional regulator [Caulobacter crescentus CB15]
 gi|13422429|gb|AAK23101.1| transcriptional regulator, LysR family [Caulobacter crescentus
           CB15]
          Length = 340

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 117/291 (40%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F+ AA++L ++  ++S+QI  LE  VG  LF R  +GL LT+   
Sbjct: 35  LNALRAFEAAARHLNFSRAADELSVTPGAVSQQIQNLEDYVGAALFKRTPKGLLLTDAAQ 94

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E + +L      L  +      +L +          L   L +F   +P + +
Sbjct: 95  TALPALREAFDRLAEAASLLTAAVDGR--RLTLTAAPSFAAKWLVPRLGKFEQAHPQVDV 152

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L    + +D +    D AIR     +   L   +L+   +   A+P  L+        +
Sbjct: 153 WLSAGMEVVDFATGEVDMAIRYGSG-RYPGLEVIRLLHETVVPVASPELLEQN-ALERPE 210

Query: 185 ELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H L+  G  D    C +   WLA      G       + N    +++    G GIA
Sbjct: 211 DLQHHILLHDGSPDADDSCPDWAMWLAARGIR-GVDGARGPRFNQSSLVIEAAANGRGIA 269

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L    + +   D+  LV   E      F  Y  +P+A     ++KAF N++
Sbjct: 270 LAKRTLAQADLDSGRLVIPFEASTAVDFAYYVVHPKAKGRLPQVKAFVNWL 320


>gi|24373106|ref|NP_717149.1| DNA-binding transcriptional activator GcvA [Shewanella oneidensis
           MR-1]
 gi|24347295|gb|AAN54593.1|AE015599_5 glycine cleavage system transcriptional activator, putative
           [Shewanella oneidensis MR-1]
          Length = 303

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 112/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L ++ +       L   L +F    P+I +
Sbjct: 68  SYFLDIKDIFIQLADATDRLLARSA--IGSLTVSMSPSFAIQWLVPRLSKFSEKNPEIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI          L   KL    +    +P  L   +     +
Sbjct: 126 RIKAVDTEASSLTDDVDVAIYYGLG-NWPGLRADKLRNEVLIPVCSPMLLNGPKPLSKPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKHHTLLH----DMSRHDWQAWFRQCGITDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV   ++V+      Y    +     GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWML 289


>gi|209552098|ref|YP_002284014.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539691|gb|ACI59622.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 325

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 120/294 (40%), Gaps = 11/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + +     V R GS + A+ +  +S++++S +I  LE E+G+ LF R +  L LT  
Sbjct: 1   MNLEDISAVEQVVRCGSLSEASRKFLVSKATLSHRIRRLEAELGVSLFDRGSAELRLTSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +    ++    E     +     +    LRI TT +LG N        FL   P +
Sbjct: 61  GRTFYAYAEKIAKACEEASDAMISQRSEDLIHLRIGTTDELGTNFFAPMALRFLKRAPTV 120

Query: 123 QIQLIL--DNKDIDISMDYADCAIRLRKPI--QSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
            ++L+L    +  D      DC I    P   ++++ + +KL+T      AAP YL+NC 
Sbjct: 121 SMELVLLRSTELFD-RNSGLDCVIFAGDPPATEAANFVAKKLLTYSSQLCAAPSYLENCG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P S ++L  H L+   D        +     ++R    P    L  N +  +    V G
Sbjct: 180 NPASPEQLKAHALV--ADTSQLRTRPWTLTNGLERSTIYPN-GRLSSNDFWMMKLSVVQG 236

Query: 239 SGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GI   P + + D+     LV ++ +  +    V   Y         ++    F
Sbjct: 237 FGIGFFPSWFIADDLAKGILVPVLPEWRSEQAHVSLLYRSHRFKNPYIRELIEF 290


>gi|167835268|ref|ZP_02462151.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 300

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 138/299 (46%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + ++L   +  L        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQNELLAAREALTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVVFENRVEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPGFAATHGMPTG 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    +IT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LDQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLE--PTLISENFLFLRQAILAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++PDY+V D+     +V  ++      F   +Y  Y     +T     F +F+  +AR+
Sbjct: 237 IVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFVLDEARN 295


>gi|53715975|ref|YP_106447.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|52421945|gb|AAU45515.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
          Length = 312

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 8   NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 68  NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 128 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAVPRHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 187 DDLPGSHWIGHGGLANLS---YSVFGNEGRSVRIQPPGRLKVKSVLLAHQMALAGAGISA 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 244 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 290


>gi|116248963|ref|YP_764804.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253613|emb|CAK12006.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 300

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 114/289 (39%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L     +AR G+F  AA  L +S +++S  I  LE  +G++LF R  R ++LT+ G
Sbjct: 5   SLKELEAAIAIARRGTFRAAAIDLGMSTTALSHTIGRLEAGLGVRLFNRTTRSVSLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +        L      ++     PSG +RI       + ++   + EFL  YPD+ 
Sbjct: 65  RLFVQQVGPTLQDLHAALDLVRSHRETPSGTIRINAAPFAARAIISPLVLEFLRRYPDMN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++ + K +DI  +  D  +R+   + +  +              +P Y K    P+  
Sbjct: 125 VDIVTEGKMVDIVKEGFDLGVRVEGLVPTDMIAVSLGRPQRHAVVGSPEYFKKHGRPMVP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I    +       F W    D  P+       + ++         +  +G+ 
Sbjct: 185 PDLLNHRCI---RVRLPDGSLFRWRFEKDGEPVQIDVRGPIALDEASLTRTAVLENAGVG 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            L +  +    +   + R++ED   P   +   YP     +  ++AF +
Sbjct: 242 YLFEQDILSDIEAGRVARVLEDWTPPYPGLCLYYPGRRNLSAGVRAFLD 290


>gi|239820687|ref|YP_002947872.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805540|gb|ACS22606.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 299

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 119/297 (40%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  VA +  F   A     S S++S  +  LETE+G++L +R  R +  T
Sbjct: 1   MNVDLGDLNAFVAVAGAKGFRDGARLSGTSASALSEAVRRLETELGVRLLHRTTRSVRPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L         ++      +     +P+G L++   I   + +L   +  FL  YP
Sbjct: 61  EAGERLLERLRPALAEVGAALDVVNGFRDRPTGTLKLNVPISAARLVLPSIVPGFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI +++I ++  +D+     D  IR  + ++   ++   +          AAP YL    
Sbjct: 121 DISLEVIAEDGFVDVLAAGCDAGIRYDERLEQD-MVAVPIGPRLQRFAVAAAPAYLDRHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCV 236
            P   +EL  H  +  G      M  + +    +  R     ++      +    +   +
Sbjct: 180 RPQHPRELLGHACLR-GRFASGSMPPWEFERDGESLRIDVTGQLIVRIGAAADLTVDAAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+G+  L +  ++   ++  L  I+E         +  YP        L+AF +FI
Sbjct: 239 AGAGVVYLFEDWLRPHFESGALEPILEPWWLRFPGPFLYYPGRRLLPAPLRAFVDFI 295


>gi|169795204|ref|YP_001712997.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|169148131|emb|CAM85994.1| putative HTH-type transcriptional regulator (LysR family)
           [Acinetobacter baumannii AYE]
          Length = 310

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 132/304 (43%), Gaps = 14/304 (4%)

Query: 1   MSFDW------DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA 54
           MS         + L VF   AR  SFT AA +L+++Q +ISRQI  LE  +G +LF R  
Sbjct: 1   MSMKIKPLPPMNSLIVFEAAARHLSFTKAANELNVTQGAISRQIRQLEEYLGKELFLRAN 60

Query: 55  RGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKE 114
           R ++LT  G + ++        L+  Q   +    +   ++ +ATT  +    L   +  
Sbjct: 61  RNISLTPTGLQYYQTI--YSALLDVAQATAEIKKWQGEHQITVATTNAMAALWLLPKVAA 118

Query: 115 FLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
           F      + ++++  +   D+     D A+   + +  + +    L    +    +P+YL
Sbjct: 119 FQQNNEGVDLRILTTDNISDLHKMDFDLALFYCR-VPPAGMRVTTLFPEEVFPVCSPNYL 177

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
              +E  S +E+    L+   D     +    W   V+ PI +P+ + + +N+Y  ++Q 
Sbjct: 178 AQFKEDSSPEEIFGKALLYLDDAQKDWITWSEWFEAVNYPIVKPK-NRVNINNYPMLLQA 236

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKN-TGKLKAFRNFI 290
            + G G+AL    +V D   +  LVR +E V+          P         +K FR+++
Sbjct: 237 AINGQGVALAWGSLVDDYLQSGALVRPVETVLRTQANFSMLEPADRGVIPSSVKHFRSWL 296

Query: 291 FLKA 294
             + 
Sbjct: 297 LDQL 300


>gi|84385541|ref|ZP_00988572.1| putative transcriptional regulator protein [Vibrio splendidus
           12B01]
 gi|84379521|gb|EAP96373.1| putative transcriptional regulator protein [Vibrio splendidus
           12B01]
          Length = 292

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 133/296 (44%), Gaps = 11/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                L++F  V   GSFT AA  L L ++++SR+I+ LE  +GI+LF+R  R L+LT+ 
Sbjct: 1   MKIADLKLFTTVVELGSFTAAANALDLPRANVSRRINDLEKSLGIQLFFRTTRSLSLTKS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++        L+         S    G+++I    +   +++Q  L +F  +YP +
Sbjct: 61  GELYYKELLNALSALDKANHVASNLSEVAHGQIKIGLLPE-TSDIMQSTLFKFQDMYPKV 119

Query: 123 QIQLI-LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +  + N  +D+     D A+     +  ++++ RK++ +     A+P +L+   +P 
Sbjct: 120 ELDIRNISNAFVDMYRQGLDLAMH-GGTLSDANVVARKVMVLQRIFVASPEFLEKQGKPS 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++EL  +  + F    P    D  W         EP +     +S   +    +   GI
Sbjct: 179 NLRELSNYPFVCF--RWPSGDIDKQWDIKDHTIKVEPSV---VSDSIGFVKGGVIRHRGI 233

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP+ +V+    +  L+ +  D        +  YP+    +   +   +F+  + 
Sbjct: 234 ALLPELLVRQQLKDGTLINLFPDENLQEEEAWLLYPQRKALSHSAQLLIDFLLQEL 289


>gi|330960247|gb|EGH60507.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 294

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 119/289 (41%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  G 
Sbjct: 4   IEDLRLAVTLSRCESLSAAARVLNVSPPALSMRLRKLETQLGITLANRDARRLSLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R ++ +  +LE      ++   +  G LR+A     G+  +   L  F  L+P +++
Sbjct: 64  RFARESAHLLEQLEALPESFKQRDERLVGTLRLAAPFGYGRQRIAPLLSRFAKLHPQLRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L           +D  I +   +  S  I R L   H    A+P YL+    P +  
Sbjct: 124 HLDLRETPW-PDRHDSDAVIHIGS-LNDSLWIARPLAQNHRWLCASPAYLEQHGVPSTPD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  I   +           L+             L  N      ++   G GI L 
Sbjct: 182 ELSAHRCICIRENDEDVTLWH--LSKGPTKKTLRVEPALLSNDGSVARRWAEQGQGIVLR 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V D   + NLVR++ D    S  +    P     + +++A   F+
Sbjct: 240 SQWDVSDAIASGNLVRVLADWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|254438687|ref|ZP_05052181.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198254133|gb|EDY78447.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 292

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 138/296 (46%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AA+ L +  +++ R I GLE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAFQVARIGTVSGAADVLGVHHATVIRHIDGLEKRLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +V +    +       ++      SG L + T++ +   +L   L  F    PDI 
Sbjct: 63  QDLMQVAAATEDQFTQLAGRIRGHGDGVSGDL-VVTSLVVLSPMLTPILANFRRENPDIT 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ + D +   +    A  AIR  +       + +  +   MH  AAP Y+ +   P  I
Sbjct: 122 VRFLTDERLFRLEYGEAHVAIRAGEVPNQPDNVVQPFMRQKMHLAAAPSYVADHGTPDGI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I   +   + +  FN    + R + E RI   +   Y+++    ++G+GI  
Sbjct: 182 DDLPNHWFIGHDNK--ENLAPFN--RWLTRQVPESRI-VFRTTDYIAMFDAVLVGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +  + ++  P+L+ ++      S  ++      L  T K++ F  F+  ++  W F
Sbjct: 237 VTTWEMQQYPDLIDVIPSQDDWSAPLWLVTHVDLHRTTKVQTFLAFLKKESESWAF 292


>gi|182679053|ref|YP_001833199.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634936|gb|ACB95710.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 307

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 6/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++VF      GS   A  +L  S +++SR ++ LE  VG++L +R  R + L+E
Sbjct: 1   MDRIDAMKVFVAALDEGSLAGAGRRLGRSPAAVSRAVAFLEDHVGVQLLHRTTRSIKLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V   LE   I        P G L I   +  G+++L+  L  FL  YP 
Sbjct: 61  AGERYAAACRRVLTDLEEADILAVGERSAPRGTLTITAPVISGEDILRPILDAFLDAYPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  +L L ++ +++  +  D A+R+   +  SS++  ++  +     A+P YL      L
Sbjct: 121 VSAKLYLLDRPVNLIDEGVDVALRIAH-LPDSSMVATRVGEVRRIIVASPRYLTEHPRIL 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L KH +I            F  +     P          VNS  + +     G G+
Sbjct: 180 EPSDLAKHQIIAMTHFGLDSWS-FPPMEGSTIPRSVSFTPRFIVNSVRAAVASAAEGHGV 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             L  Y V +      L+ I+ D    S  V+    E   +  K++AF +F   + R
Sbjct: 239 TRLFSYHVAEKVREGQLLIILSDTEHTSLPVHVITQEGRLSVPKVRAFVDFAVPRLR 295


>gi|99081589|ref|YP_613743.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037869|gb|ABF64481.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 303

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 136/301 (45%), Gaps = 14/301 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW+++R F   A  GSF+ AA  L+ +Q ++ RQ+  LE  +G+ +F R  + L LT
Sbjct: 10  INFDWNQVRSFLATAEEGSFSAAARVLNQTQPTVGRQVGALEEALGVTVFERVGKSLRLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G++L     E+        +     S    G++RI  +  +    L   LK+  L  P
Sbjct: 70  TAGTELLVHVREMADVANKISLTATGQSQSVEGQVRITASDVMSTYQLPAMLKQIRLAAP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I ++  N   D+    AD AIR  +P Q   LI R +     H YAA  YL     P
Sbjct: 130 RLEIDVVAANDLRDLHRREADIAIRHIRPTQ-PDLIARLVAQASAHLYAASSYLDQVGRP 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIM--QYCVL 237
            S +EL + + ++FGD+                P G P      ++ S+  ++  +    
Sbjct: 189 RSEEELAQLDFVSFGDVER--------FIGFLNPAGIPVTRKNFRIGSHSGVVSWELVRQ 240

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL--KAR 295
           G G++++ D +    P + RI+ D    +F ++      L    +++   + +    KAR
Sbjct: 241 GFGVSVMSDDVAAPTPGIERILPDRDPFAFPIWLATHSELHTARRIRLVFDQLAEQFKAR 300

Query: 296 D 296
           +
Sbjct: 301 E 301


>gi|330500998|ref|YP_004377867.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas mendocina NK-01]
 gi|328915284|gb|AEB56115.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas mendocina NK-01]
          Length = 306

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 113/295 (38%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LRVF   AR  SFT AA +L  SQ +IS+QI  LE ++  +LF R  RG+ LTE 
Sbjct: 8   LSLDALRVFESAARQLSFTAAASELGSSQPAISQQIKRLEQQLATRLFDRVYRGIVLTEA 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     E    L+   + +          L++AT        L   L+ F  LYP++
Sbjct: 68  GELLLAHVQEGLASLDAGLVAVTARQQHE--VLQVATDFAFAAYWLMPRLQRFNRLYPEV 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + LI   +D        D AIR              L    +    +P  L   + PL 
Sbjct: 126 DVSLITSERDPATVPSDIDVAIRFGDGRFKHG-EAHLLFREEVFPVCSPRLLGARQPPLP 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +  L+           D+  L         P    L+ ++Y  ++Q  + G G+A
Sbjct: 185 TDVLTELPLLHLRPEHRSRWFDWEGLFRALGIASLPTPGALRFDNYTLLIQAAIAGQGVA 244

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +   ++V +      L R+ +     +   Y   PE  +       F  ++  + 
Sbjct: 245 IGWRHLVDELLAQGLLCRLGDAEAHSALGYYLVLPERKRRQRLTARFVGWLQEEL 299


>gi|238911934|ref|ZP_04655771.1| hypothetical protein SentesTe_12491 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 313

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 132/303 (43%), Gaps = 8/303 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +     ++ +    + S   + AA  L+LS S+IS+ ++ LE  +G+ L  R  R   LT
Sbjct: 3   IPLTIKQIEMLVKASESKGLSEAARLLNLSPSAISKGLAALEENLGVALIKRTTRNFQLT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G       S++  + +       E    P G L++ +++  G   L     ++  L  
Sbjct: 63  EAGEFFVARASKLLEEFDDVINSTCEYINYPHGLLKVTSSVAFGYAHLVEIFDKYRELNK 122

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ L LD+  ++++ +  D A+R+       +   RKL  +     A+P YL+    P
Sbjct: 123 DVELILELDDHIVNLNENDVDIALRITS-TPPQNYATRKLAEVSWMYCASPAYLEKMGAP 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L  H  + +  + P         ++ +     P+I     +S L +        G
Sbjct: 182 KKLDDLINHQCLVYQGITPSLRFSAPG-SSSNSCNHRPKIPLSVNSSLLLLKAALAS-QG 239

Query: 241 IALLPDYIVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA LP Y+V    ++  L+ +  D   + P+ ++Y  Y  +     K+++F +F+    +
Sbjct: 240 IAWLPSYLVSSHIEDGELIPLTMDGKCVYPTHSLYALYFPSKYKNPKVRSFIDFLLEDHQ 299

Query: 296 DWK 298
            WK
Sbjct: 300 PWK 302


>gi|157962802|ref|YP_001502836.1| DNA-binding transcriptional activator GcvA [Shewanella pealeana
           ATCC 700345]
 gi|157847802|gb|ABV88301.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 303

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 111/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L +AT+       L   L +F    P+I +
Sbjct: 68  SYFLDIKDIFTQLADATDRLLARSA--IGSLTVATSPSFAIQWLVPRLAKFSEKNPEIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI          +   KL    +    +P  L   +      
Sbjct: 126 RIKAVDDEDGSLTDDVDVAIYYGMG-NWQGMRADKLRNEVLIPVCSPLLLNGPKPLEKPC 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLRNHTLLHDSSR----QDWLAWFRQCGITDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV    +V+      Y    +     GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVCPFPEVLVSKSAYYLVCQQNHAEIGKVVAFREWML 289


>gi|330953814|gb|EGH54074.1| helix-turn-helix, Fis-type [Pseudomonas syringae Cit 7]
          Length = 294

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 122/290 (42%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+   ++R  S + AA  L++S  ++S ++  LE ++GI L  R AR L+LT  G 
Sbjct: 4   IEDLRLAVTLSRCESLSAAARILNVSPPALSMRLRKLEAQLGITLANRDARRLSLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R ++++  +LE      ++   +  G LR+A     G+  +   L  F  L+P + +
Sbjct: 64  RFARESAQLLEQLEALPESFKQRDERLVGTLRLAAPFGYGRQRIAPLLARFARLHPQLCL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L           +D  I +   +  S  I R L   H    A+P Y++    P + +
Sbjct: 124 QLDLRETPW-PDRHDSDAVIHIGS-LNDSQWIARPLAQNHRWLCASPAYIEQHGVPSTPE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I   +          W  +  +     RI   L  N      ++   G GI L
Sbjct: 182 QLAAHRCICIRENDEDVTL---WHLSKGQTKKTLRIEPALLSNDGSVARRWAEQGLGIVL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D   +  LVR++ D    S  +    P     + +++A   F+
Sbjct: 239 RSQWDVSDAIASGRLVRVLADWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|302188652|ref|ZP_07265325.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae 642]
          Length = 294

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 121/290 (41%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  G 
Sbjct: 4   IEDLRLAVTLSRCESLSAAARILNVSPPALSMRLRKLETQLGITLANRDARRLSLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R ++++  +LE      ++   +  G LR+A     G+  +   L  F  L+P + +
Sbjct: 64  RFARESAQLLEQLEALPESFKQRDERLVGTLRLAAPFGYGRQRIAPLLARFSRLHPQLCL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L           +D  I +   +  S  I R L   H    A+P Y++    P +  
Sbjct: 124 HLDLRETPW-PDRHDSDAVIHIGS-LNDSLWIARPLAQNHRWLCASPAYIEQHGAPSTPD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I   +          W  +  +     RI   L  N      ++   G GI L
Sbjct: 182 QLAGHRCICIRENDEDVTL---WHLSKGQTKKTLRIEPALLSNDGSVARRWAEQGLGIVL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D   +  LVR++ D    S  +    P     + +++A   F+
Sbjct: 239 RSQWDVSDAIASGRLVRVLADWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|330809016|ref|YP_004353478.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377124|gb|AEA68474.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 9/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R  +FT AAE+LH++QS++S Q+  LE   G++LF+R +  L LT  G+ L 
Sbjct: 10  LRAFEAATRHATFTAAAEELHVTQSAVSHQLKHLEQLWGLQLFHRSS-SLHLTSAGAALA 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  E + KLE T  +L+E + +   +L ++TT       L   L +    +P+I + L 
Sbjct: 69  PIVREFFMKLEATLADLREQNGRQ--RLSVSTTYSFALKWLLPRLPDLAQAHPEILLTLD 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  I+ S    D AIRL       SL    L    +   A+P  L     P +  EL 
Sbjct: 127 STDSAINFSTTDPDVAIRLGSG-HFPSLFSEFLFREQIFPVASPALLARFGTPQTAAELL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           ++ L+T  D      +   W A +   +   + S    ++ ++I +  +LG GIAL    
Sbjct: 186 RYPLLT-RDGAALVPKWEQWFAQMGVEVTTLKESIRYADTNMTI-EAALLGQGIALARSG 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V+   ++  L R+ E         YF  P+ ++    + +FR ++  +A
Sbjct: 244 HVEAELNDGRLERLFELPFASPLAYYFVCPKGIETQPHIASFRRWLVTQA 293


>gi|167467785|ref|ZP_02332489.1| substrate-binding transcriptional regulator, LysR family protein
           [Yersinia pestis FV-1]
          Length = 291

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 123/286 (43%), Gaps = 6/286 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  VAR  SFT AA +L +SQS++S  I GLE  + ++L  R  R +  TE G ++  
Sbjct: 4   RAFLCVARERSFTKAAGKLGVSQSALSHAIKGLEERLNLRLLTRTTRSVAPTEAGERIIA 63

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
                   LE     L + +   SG +R++      ++LL   LK FL  YP+I ++L++
Sbjct: 64  CLEPRLADLEQELETLLQLNGTVSGNIRLSAGEHAARSLLWPKLKPFLRKYPEINVELVV 123

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           DN  ++I     D  +RL + +    +  +    + M    +P Y      P++  EL  
Sbjct: 124 DNGFVNIVDGRFDAGVRLGESVDKDMIAVKIGPEMRMAVVGSPEYFMANAIPVTPHELQH 183

Query: 189 HNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           H  I     +P     ++W      +P+       L +N     +     G G+A +P+ 
Sbjct: 184 HRCINM--RLPTAGGLYHWEFEKEGKPLRVKVEGQLTLNILPERIDAAQSGFGLACVPED 241

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++    +  L++++E         Y  YP   ++        + +
Sbjct: 242 SIQAFLRSGKLIQVLEAWCPSFPGYYLYYPSRKQHPPVFALMIDAL 287


>gi|170719284|ref|YP_001746972.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757287|gb|ACA70603.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 299

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 112/292 (38%), Gaps = 8/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LRVF   AR   FT AA +L  +Q ++S+Q+  LE  +G +LF R  RG+ LT+
Sbjct: 7   DLSLDALRVFEAAARLRGFTAAALELGTTQPAVSQQVKRLEARLGTRLFDRIYRGIALTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L     +    ++      Q S       L++AT        L   L+ F   YP 
Sbjct: 67  AGQLLFEQVHQGLQAMDDGIA--QASGRGQREVLQVATDFAFAAFWLMPRLQRFHDAYPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+             R L    +    +P       +PL
Sbjct: 125 VDVSLVTGERSQGMLRPDIDVAVLFGDGRFHQG-ESRWLFDEEVFPVCSPRL--THGKPL 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S   L +  L+           D+  +         P    L+ ++Y  ++Q  + G G+
Sbjct: 182 SAAALQRLPLLHLRGEQASRWFDWAGVFRGFGVQSPPPPGQLRFDNYTLLVQAAIAGQGV 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+   ++V    +   L R +E  +  +   Y   P   +    ++ F +++
Sbjct: 242 AIGWRHLVDGLVEQGLLCRPLEGSLRSARGYYVVLPPRKRRGALIERFVDWL 293


>gi|187477176|ref|YP_785200.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115421762|emb|CAJ48273.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 304

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 123/301 (40%), Gaps = 6/301 (1%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+    D L  F  +    +   AA +L ++ S++++++S +E  +GI+L  R  R + L
Sbjct: 1   MNMLSTDDLLFFMALTPEQTLADAARRLDVTPSAVTQRLSAMERRLGIQLVDRSGRRIAL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T++G  L      +  +L      L     + +G+LR+   +  GQ  +   +  F   Y
Sbjct: 61  TDEGELLAERARSICAQLSGLADTLASRRGQVAGQLRVLAPLGFGQRHIAPLVGRFQQQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P++   L+L ++   +   + D  I + + ++ SSLI  +L        AAP YLK    
Sbjct: 121 PEVTATLMLSDRPQRLDAHHWDVLIHIGE-LRDSSLIMHRLARNRRILCAAPAYLKRQGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S ++L  H+ I   +   + +  +       R         L  N     +Q+ + G 
Sbjct: 180 PASPEDLHHHDCIALRE-NDEDVTLWRLGNHDGRRATVRIEPRLASNDGGVALQWALSGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI    ++ V +   +  L+ I+     P   +          + + + F   +   A  
Sbjct: 239 GILARSEWDVAEALRDGKLLEILPGWRLPDADIVALVSSRKSRSARTERFLEQLHEMATP 298

Query: 297 W 297
           W
Sbjct: 299 W 299


>gi|294637790|ref|ZP_06716063.1| HTH-type transcriptional activator AaeR [Edwardsiella tarda ATCC
           23685]
 gi|291089030|gb|EFE21591.1| HTH-type transcriptional activator AaeR [Edwardsiella tarda ATCC
           23685]
          Length = 306

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 121/289 (41%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  V   GSFT AA QL +S SSIS+ +S LE  + I+L  R  R ++LTE G 
Sbjct: 4   LKGMAIFAKVVECGSFTGAATQLAMSVSSISQSVSKLEQALQIRLLNRSTRRISLTEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++  + +    +L   +  PSG LRI ++  + Q +L       L  YP + +
Sbjct: 64  IYYQGCRKMLQEAQEVHEQLYAYNNTPSGTLRIGSSATMAQKVLAPISARMLAAYPGLAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+      D+  D  D  IR  + +Q SSL  R L  + M   AA  YL+    P    
Sbjct: 124 NLVTGVPAPDLVADGLDLVIRAGE-LQDSSLFCRSLGAMPMVICAAKSYLQQHGTPHHPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  ++ + F       +          RP+    +     N   +++ +   G+GIA L
Sbjct: 183 ELVNYSWLDFSGQPANDLTLITPEGHTLRPM---PVGRFHTNDAQTLLSWLHAGAGIAYL 239

Query: 245 PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V D     ++        +    VY  Y        K++    ++
Sbjct: 240 PLMWVIDAVRRKQVEILFPHYQSTPRPVYALYAHKSPLPLKVRLCLEYL 288


>gi|71735017|ref|YP_272345.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289627020|ref|ZP_06459974.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647916|ref|ZP_06479259.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298484638|ref|ZP_07002741.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|71555570|gb|AAZ34781.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298160778|gb|EFI01796.1| Transcriptional regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330867911|gb|EGH02620.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 316

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 113/295 (38%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LTE
Sbjct: 7   DMSLDLLRAFEVAARLRSFTAAAIELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  + PD
Sbjct: 67  AGEILFSHVQAGLQSIDSGLIAITEQHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  +   + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESHWLFSEEVFPVCSPQLITGRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNEALRDFPLLHLRGESSNNWFDWAGVFRALDIPQAPTPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWKHLVDDLLDQGLLCRPIAGAAISGQGYYVVLPQRKRRVQIVQQFMDWLASE 298


>gi|226944562|ref|YP_002799635.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
 gi|226719489|gb|ACO78660.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
          Length = 319

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 117/284 (41%), Gaps = 7/284 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   A  GSF+  A ++ L    +S  I  LE ++ I+LF R  R L LT +G 
Sbjct: 4   LEDLALFVRSAALGSFSAVAREVDLLPGQVSAAIKRLERDLDIRLFARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       V   L      L        G L+++   DLG+NLL   L  F   +P + +
Sbjct: 64  QYLPYAERVLETLREGHERLHRERAGLQGLLQVSAPSDLGRNLLLPWLSAFCREHPRLTL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  DI  D  D AIR   P++ +S I   L         AAP YL+ C  P ++
Sbjct: 124 RLLLSDQVADIFRDPIDVAIRYG-PMEDASFIALPLAPDNRRVLVAAPDYLQRCGRPRTL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  + +  L+     D        R         L  +    + ++ + G GIA 
Sbjct: 183 DELAGHVCLVY--LLGGRAHDKWGFEEGGRRRVIAVRGGLLSDDADVVRRWAIAGHGIAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
                V ++     L  ++ D    +  ++   P   + +  ++
Sbjct: 241 KSWLDVGEDVAAGRLELLLGDCPGEAAPLHLVCPHRKQFSPAVQ 284


>gi|323498515|ref|ZP_08103508.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323316404|gb|EGA69422.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 306

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 144/295 (48%), Gaps = 7/295 (2%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   KL +   V+R+GSF  AA++L+L +S +S+QI  LE ++G+KL  R  R ++LT 
Sbjct: 1   MDLASKLTLLLEVSRNGSFAKAADKLNLDRSVLSKQIKQLEEQLGVKLVNRTTRSMSLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++     +V   LE T         +P+G LR+++    G+  LQ  +++FL  +P 
Sbjct: 61  VGKRVVEQAEKVTLILEDTISIADSHHSEPTGHLRVSSATMFGRVYLQAAVEKFLEKFPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             I+L+L+++ +D+  +  D   R+  P++ SS+I ++L    +   A+  ++     P 
Sbjct: 121 ASIELLLNDERVDVVSEGFDIVFRIG-PMRDSSMIAKRLAENKVAIIASKDFVAKHGMPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S +EL +   + +G+      +         + I  P  S  +VN    I++      G 
Sbjct: 180 SPEELVELPGVIYGNSNFVVDKLQFADQDSGQSIVYPIKSNYRVNEAELIVESVKASIGY 239

Query: 242 ALLPDYIVKDNPN---LVRIMEDVITPSFT-VYFCYPEALKNTGKLKAFRNFIFL 292
           A +  +++  +     LV+++ D+  PSF  +Y  Y    ++     +F + +  
Sbjct: 240 AQIGQFMIPGDLEQMGLVQLLPDLYLPSFGDIYAMYTHRKQSVLAT-SFIDIVRE 293


>gi|260549721|ref|ZP_05823938.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407238|gb|EEX00714.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 309

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMDVILLHRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  +I + E      G LRIATT DL    +   L  ++  +  
Sbjct: 62  AGQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHIIPALSHWMSAHRG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + +   + ++ ID+  +  D A+R+   P++ SS +   +  +     A+P YL      
Sbjct: 122 LSVHFEVGHRYIDLIEERIDIAVRMSSTPVEESSSVV-PMAFVDQILVASPSYLNQSSPI 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L   +L+ H L++   +      +F   A     +    +S LQ N+       C  G G
Sbjct: 181 LHPNDLNNHELLSINAMNESRTFNFQH-AKTGEKLNIEMVSRLQSNNLQVAKALCQQGHG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA +     +      +L+ I+ D   P+FT+Y    +  +   K++     +
Sbjct: 240 IARILYLDAQKELKAGSLIEILPDWKLPAFTLYAEIAKHDQQPMKIQRCVEAL 292


>gi|218462259|ref|ZP_03502350.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Kim 5]
          Length = 293

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 131/290 (45%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P++
Sbjct: 61  GGIFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P +   L+  KL    +  YA+  YL     P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERP-EQGRLVSSKLTDYALGLYASRDYLARNGRPGD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L  H  I + + +      F         +     + L+ ++ +   +    G+GI 
Sbjct: 180 VDALRAHPRIGYVEDL-----IFTASLNFSGEVMRSWDAGLKFSTAIGQTEAVRSGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +L DYI +  P L RI+ ++       +  Y E  ++  ++++  +F+  
Sbjct: 235 ILHDYIARQYPELQRILPEISI-RRAYWTTYHETARDLVRVRSVVDFLQE 283


>gi|171316402|ref|ZP_02905621.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171098435|gb|EDT43238.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 291

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 135/293 (46%), Gaps = 12/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D ++L+ F  VA SG  + AA +L +S+S +SR++  LE+++G++L  R  RG  LTE 
Sbjct: 1   MDIEELQTFVEVADSGGVSPAARRLGVSKSIVSRRLLRLESDLGVQLLARTTRGSALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS      + V  +++  + E    + +  G+LRIA  +  G   L   L +    +P +
Sbjct: 61  GSAFRDYAARVVAEIDAAR-ETISPAGELRGRLRIAAPLTFGPTHLAPVLADMARRHPLL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I     ++ +D+  D  DCAIR+   +  S+LI + +  I     A+P Y++    P +
Sbjct: 120 HIHTCYSDRMVDLVGDGYDCAIRIGY-LPDSNLIAKCVGPIDGKLVASPGYIEANGAPET 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H  +  G    +           ++ I        + ++ ++I+   V G G+A
Sbjct: 179 PDELLGHEALMQGTESWR-------FKHGNKTITVRPQGRFKADNAIAIVAAAVAGLGLA 231

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD +      +  LV +M     P+  +Y   P+    + K++   + +  
Sbjct: 232 WLPDGVTAPYVASGELVPVMRRFPPPTAGIYVVRPQGQNPSAKIQMLTDLLIE 284


>gi|134280816|ref|ZP_01767526.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|134247838|gb|EBA47922.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 312

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 8   NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 68  NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 128 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAVPRHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 187 DDLPGSHWIGHGGLANLS---YSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGAGISA 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 244 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 290


>gi|91225702|ref|ZP_01260731.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|91189591|gb|EAS75866.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
          Length = 280

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 125/273 (45%), Gaps = 7/273 (2%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           + ++++++S+ +  LE ++ ++L  R  R ++LTE+G +L  +       +E    EL +
Sbjct: 1   MGVTRAALSQHLKALEQQLQVRLINRTTRSMSLTEEGQRLLDILQPSLVNIEQVVNELND 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
           S ++PSG +RI+ +    + L++  L EFL  YP I+++LI+D+   +I  +  D  IRL
Sbjct: 61  SHLEPSGLIRISVSRTAARLLIEPYLGEFLSRYPKIRLELIMDDGFSNIVAEGVDAGIRL 120

Query: 147 RKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDF 205
              +    ++   +   +     ++P Y +    P + ++L+ HN + +       ++ +
Sbjct: 121 GLSL-DEHMVAIPITPPLTTAIVSSPEYFRQNGLPQTPEDLEGHNCLAYRFTSSGTIDHW 179

Query: 206 NWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIME 260
           +  +     RP+          N   S++Q  + G G+    D  V+   D   L R++ 
Sbjct: 180 SLTSPDVAKRPLVFEPKGNAIFNDDCSMLQAAIQGVGLVKHIDLWVEKHIDEGRLTRVLT 239

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                    Y   P       K++   +F+  K
Sbjct: 240 PWCKEFPGFYLYIPSREHMPKKIRVLMDFLIEK 272


>gi|311107999|ref|YP_003980852.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310762688|gb|ADP18137.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           158 [Achromobacter xylosoxidans A8]
          Length = 296

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 126/290 (43%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD  R+F  + R G+   AA  L + Q++  R+++ LE  +  +LF R   G   T  
Sbjct: 8   MDWDNARIFLAIYRVGTLRGAAALLQVDQATAGRRLAALEASLDARLFLRTPGGYVPTAA 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +    +  Q ++Q    + SG +R+AT+  +    +   ++     +PDI
Sbjct: 68  GELAFAAAERMEQAADQLQRQMQGLDHRLSGVVRVATSETVATYYVMEAVRRVHAHHPDI 127

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    +  +++   AD AIR  +P  +  LI R L    +  YA+  YL+   EP  
Sbjct: 128 RVTLSTAIQLSNLTRREADLAIRNIRP-DNPDLIHRHLARKEVGLYASKAYLEAHGEPRL 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H L+T+   +     D         P G  R+   ++NS L I++    G GI 
Sbjct: 187 GTAFAGHTLVTYQQAVLPGWSD----TFCGEPTGNGRMGV-ELNSGLMIIEAVAAGLGIG 241

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +P ++    P+LVRI     +  + ++      L  T +++A  + I  
Sbjct: 242 QVPTHMAPQYPDLVRIWP-ARSEPYDLWLVMHGDLNRTARVRAVADAIVE 290


>gi|78063070|ref|YP_372978.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970955|gb|ABB12334.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 310

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 120/274 (43%), Gaps = 7/274 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L ++  + S+Q++ LE  + ++L  R  RG+ LT +G +L         +LE+    L
Sbjct: 24  RELGMTPQAASKQVAALEALLNVRLLQRSTRGIVLTLEGERLLAQCRGAVGELESALRML 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
            +     +G +R+A    L +  L   L EF    P +  +LI+ +   DI     D A+
Sbjct: 84  DDDRAPAAGTIRVAAPYSLARRFLAPLLGEFCDRQPGVTAELIVSDDMADIVEQRIDIAV 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R    +  S L+ R++  + +   A+P YL+   EP +I  L  H    F  L P+  + 
Sbjct: 144 RTGN-LPDSGLVARRVADLQLIVCASPAYLRRHGEPQTIDALRDHRCTAF--LYPRTGKP 200

Query: 205 FNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIME 260
           F W   VD  +   +I   +  N   + +   + G+ I     Y V  +     LV ++ 
Sbjct: 201 FPWEFLVDGRVDTRQIDPFIATNDIDAELDTVLSGAAIGQFFGYSVHAHIREGRLVPLLT 260

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +T  + ++ C P+ +    + +   +F+  + 
Sbjct: 261 RHVTCRYGLHLCMPQRMHLPRRSRLLMDFLADRL 294


>gi|300310624|ref|YP_003774716.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073409|gb|ADJ62808.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 123/291 (42%), Gaps = 10/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D  ++  F  V   G+F+ AA+ L L+ SS+S+ +  LE  +   L  R  R L+LTE G
Sbjct: 8   DLARMATFARVVELGAFSRAAKALGLTTSSVSQHVRALELSLQATLLNRSTRKLSLTEAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  ++  + +       +  +   + +  G++RIA +  +    L   L +F+   P ++
Sbjct: 68  TLFYKHCAHIVTAASEAEQSIAVLNNEMVGEVRIAVSSFMSTKYLIPALHDFIRHNPKVR 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L + + ++D+     D A+R  +  Q   +    L        A+P YL       S 
Sbjct: 128 LRLEVADNNVDLIEQRIDLALRAGRNRQPGDIF---LGRFSDVLCASPSYLAVRPPIHSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDF-NWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H+ + F      C  +F N  +   R   +PRIS    N   S+    + G GI 
Sbjct: 185 VDLLHHDFLLFNPHGEPCFLEFSNAASGTVRVRLQPRISA---NHARSLRYLALDGHGIT 241

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            L +  + D+     LV+++ D     F VY           K++     I
Sbjct: 242 RLLECKIDDDLRAGRLVQVLPDWTLGGFDVYVTVRHRDNMPLKVRQCLEHI 292


>gi|152970290|ref|YP_001335399.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955139|gb|ABR77169.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 300

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ L++F  V    SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+ 
Sbjct: 5   LDFNALKIFIAVVERDSFVGASKALEMPTSNVSRCISQLEDKLNLQLIERSTRHMKLTQA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   +PD+
Sbjct: 65  GHLLYTRAKPLLEALEQTETELTLRQMQFKGPLRICIPNEIGPVLLGSVVADFACQHPDL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I  + +    +   D  D A+ + R  +  S  I R LVTI     AAP  ++    P 
Sbjct: 125 EISCVTNLSGYESLRDDLDLAVIVSRGQMDDSDYIARHLVTIPCTIVAAPSVIQRYGTPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            IQ+ ++   IT  + +      + ++               +VNS     +  + G G 
Sbjct: 185 RIQQFEELPCITTVNALKGA--PWQFVNKKGGFETIKVNGRYRVNSGEMAGRAAISGVGF 242

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L     +   D+  L+ I  +       ++  Y +      K +A  +F+  + 
Sbjct: 243 AILSKQACQPYIDDGRLIEIEFEQSAAPLQLFALYSDRRYLPAKTRALIDFMHQRL 298


>gi|170735169|ref|YP_001774283.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821207|gb|ACA95788.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 296

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 120/291 (41%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF RH R + LT  G 
Sbjct: 8   LNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGRPLFERHNRRVALTAAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++     +    + +    LR++         L   L  F + +P I++
Sbjct: 68  AYLAEVGASFDRIALATAQHFGHAQQR--VLRVSAPATFSLRWLVPKLSSFQVAHPAIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ ID   D  D  +R   P      +  + ++       AP  L+  R   +  
Sbjct: 126 RLSTSNEPIDKLRDKVDLIVR-GGPQAIDGYVAEEFLSEVRLPVCAPKLLEG-RSLDTPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WLA    P   PR S L +  +   +Q  + G G+A+ 
Sbjct: 184 DLAGFTLLHAATYPGMWPE---WLAAAGHPNLAPRHS-LTLEHFYLTLQGALDGLGVAMG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +V D+     LV+   +   P +  +     A  +   ++AF++++  
Sbjct: 240 PIALVADDIAEGRLVQPFSEPALPPWRYFMYVASARADDDAVRAFKDWLKA 290


>gi|186474983|ref|YP_001856453.1| DNA-binding transcriptional activator GcvA [Burkholderia phymatum
           STM815]
 gi|184191442|gb|ACC69407.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 334

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 122/306 (39%), Gaps = 18/306 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      + F   AR  SF+ AA++L+++  ++S QI  LE E+G+KLF R  + 
Sbjct: 1   MDLRQLPALNAIKAFEAAARHESFSRAADELYVTHGAVSHQIRALEEELGVKLFARDGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           + LTE G +           L     E++        +L ++         +   +  F+
Sbjct: 61  VRLTEIGRRYAAQVRTALVSLAEATREIRAGDRDR--RLVVSMLSSFAARWVTPRIGRFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
              P   ++L+  N   D + D  DCAIR         L    L+        +P +   
Sbjct: 119 EANPQWDLELLSTNALTDFARDDVDCAIRFGYG-NYPGLHTELLLEEVFFPACSPTF-NG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
              P +  +L    L+   D + +   D   L        EP+   L  +S   ++Q  +
Sbjct: 177 GNLPKTPVDLANVPLLRSDDELWRPWFDAAGLNDW----PEPKRGVLYQDSSN-LLQAAI 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+AL    +         LVR+ +      +  YF     L  T ++KAFR+++F +
Sbjct: 232 DGQGVALTRRSLAMHEVAAGRLVRLFDIDGPSPWQYYFICTPQLMRTARVKAFRDWVFDE 291

Query: 294 ARDWKF 299
              ++ 
Sbjct: 292 VGRFRL 297


>gi|115360231|ref|YP_777369.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285519|gb|ABI91035.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 306

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 129/293 (44%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L++ + + Q  + +P G LR+        N L   +  F   +P 
Sbjct: 61  TAERIYERCAAVLDELDSLEAQAQSHTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L  + +D+  +  D  I +   + S + + R +  I +   A P YL+    P 
Sbjct: 121 VRLDVTLTERPVDLVGEGYDIGIVVPYMLTSETTVVRLVERIPVVIVATPAYLRAHPRPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L +H  +     + +    F         +  P    +  NS +   +  +   GI
Sbjct: 181 TPAALAEHAFVPLSPSLRRPALSFR---VDGDTLTVPLSFDVSSNSPVFNREMVMHDFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +V+    +  LV+++ED         +   Y        K+KAF ++
Sbjct: 238 GVVPRTLVEAELASGALVQLLEDADLVDAFVEIKLAYANRALLPAKVKAFIDY 290


>gi|313496427|gb|ADR57793.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 295

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 133/290 (45%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEQSLGTALFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ ++   P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQAIT-PLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  LI RKL    +  YA+  YL        
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQDYLDRAPPLRH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ I + D +      F+                 +  S ++       G GIA
Sbjct: 180 REDLARHSWIGYVDDL-----LFSQELLFLNSFCRAPNVVFRSTSVIAQQAAARAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LP+Y+ + +P LVR++    T   + + C    L  + +L+   +++  
Sbjct: 235 VLPNYMARHDPTLVRVLPG-ETIQRSYWICTRRELHKSVRLRVVWDYLLA 283


>gi|293396301|ref|ZP_06640579.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291421090|gb|EFE94341.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 310

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 125/294 (42%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++ +F +V   GS   AA +L +S S++S+ +  LE  VG+ L +R  R L LTE G 
Sbjct: 5   LNRMAIFAMVVAEGSLAGAARRLGMSPSAVSQHMRSLEKAVGVPLLHRSTRRLALTEAGE 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  + +  +  L E      G+LRIATT+ +G   L   L   LL +P + +
Sbjct: 65  AFYPGCEAMLQQAQQAEQRLAELRDTLVGELRIATTVGIGGGPLAEALSPLLLAHPKLSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++ D++ +D+     D ++R+ + +  +++I   L    M   AAP YL     P + Q
Sbjct: 125 RILADDRVVDMIEQRVDISLRVNRQLADATMIAHPLSEWPMVLCAAPRYLSQYGVPETPQ 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  IT G                     E     +   S   +  +  +G GI+  
Sbjct: 185 QLVHHRWITGGHAGFHLDLHHQSGEVFKLRQAE---GQIISGSMNVMRAFTRMGLGISGQ 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P Y + D      L+ ++      +F ++    E      K +    ++    R
Sbjct: 242 PLYEIGDELRRGELIALLPAWRPSAFRLHALTLE-RAMPEKTRQALRYLRDYFR 294


>gi|28558879|ref|NP_788139.1| putative transcriptional regulator [Ruegeria sp. PR1b]
 gi|22726430|gb|AAN05225.1| RC152 [Ruegeria sp. PR1b]
          Length = 306

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 130/301 (43%), Gaps = 8/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +RVF  V    SF  AA  L ++ +SI+R ++ LE ++G +L  R  R ++LT
Sbjct: 1   MH-SLKPIRVFLEVVAQDSFIGAARSLRMTPASITRIVAQLEEDLGQQLLTRTTRQISLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+ +      V    +    E+  ++    G+L +   +  G  LL G +  F L YP
Sbjct: 60  GAGALVAARYRPVLEDFDRVTQEITSATHPDRGRLSLNAPLSFGMRLLPGLIDSFRLAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+ + L +  +DI  +  D AIR+  P    S I R++  +     A P        P
Sbjct: 120 QIQVDVQLTDTLVDIIDESCDLAIRISGPPTDKSTIWRRICMVPRAIVAGPALFDRISVP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  ELD ++ +++G   P+  + F          G   +S    N+   ++     G+G
Sbjct: 180 QNPDELDPNHCLSYGTGKPETWKMFRIGTARTFRAGTEIVS----NNGELLLALAAAGNG 235

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  LP ++V+D  N   +V ++ D       +   YP        +  F +F     RD+
Sbjct: 236 MVNLPRFLVQDAINKKKVVEVLPDWDLSPLNLMLYYPPYDALPPLIATFSDFFEAYIRDF 295

Query: 298 K 298
           +
Sbjct: 296 E 296


>gi|107026665|ref|YP_624176.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692145|ref|YP_837678.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896039|gb|ABF79203.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650145|gb|ABK10785.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 319

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +   G  TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVANTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +    +  KL    +  YA   YL      
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERP-ERGPYVVTKLCDYQLRLYATHDYLATHPPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +    E    L  +DR +     + L+  S ++ +   + G G
Sbjct: 190 TCTDDLARHAFISYVDDLAFSNE----LLYLDRAVPGA-TAGLRTTSVIAQVFAALQGGG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+LP ++    P LV ++ + +  +   +    E L+   ++ A  +++   A
Sbjct: 245 LAILPCFMAATQPALVPVLPNDVVVTRCFWLTCREDLRKLRRVTALWDYLRAAA 298


>gi|170697930|ref|ZP_02889014.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137205|gb|EDT05449.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 306

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L++ + + Q  + +P G LR+        N L   +  F   +P 
Sbjct: 61  TAERIYERCAAVLDELDSLEAQAQSHTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L  + +D+  +  D  I +   + S + + R +  I +   A P YL+    P 
Sbjct: 121 VRLDVTLTERPVDLVGEGYDIGIVVPYMLTSETTVVRLVERIPVVIVATPAYLRAHPRPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L +H  +    L P               +  P    +  NS +   +  +   GI
Sbjct: 181 TPAALAEHAFV---PLSPSLRRPALAFRIDGDTLTVPLSFDISSNSPVFNREMVMHDFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +V+    +  LV+++E  D++     +   Y        K+KAF ++
Sbjct: 238 GVVPRTLVEAELASGALVQLLEGADLVDAFVEIKLAYANRALLPAKVKAFIDY 290


>gi|150397563|ref|YP_001328030.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029078|gb|ABR61195.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 299

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 138/289 (47%), Gaps = 9/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  + VF  VA +G F+ AA +L+L++S++ + +S LE  +G++LF R  R   LTE+G 
Sbjct: 4   FTGISVFVEVADAGGFSAAAARLNLTRSAVGKTVSRLEQRLGVRLFNRTTRTQNLTEEGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +   +++T +  L+    +  G+LRI+  +  G+  +   L++ L  +P ++ 
Sbjct: 64  LFYESCQKALGEIKTAESLLESGRREIRGRLRISMPVLFGRQCVAPLLRDLLQAHPHLEF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L  +++ ID+  +  D A+R       + L+ R +    M   A+P YL+    P  + 
Sbjct: 124 DLSFNDRVIDLLDEGFDLAVRNAPLGNGAGLMMRTVAEQRMTVCASPAYLEARGMPKKVA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSGIA 242
           EL  H  + +     +  E  +W    +    E  +  + L+++   +I      G G+A
Sbjct: 184 ELAAHEGVVYC----RGGEPRSWTFPAEGKAAEAVLPQARLRLDDLAAIADAAAAGFGLA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP ++V++      LVR++ D     F  +  +P+      KL+   +
Sbjct: 240 WLPCWLVRERVQKGELVRVLTDRPGLIFKAHAVWPQTQHVLPKLRVVID 288


>gi|94497397|ref|ZP_01303968.1| transcriptional regulator, LysR family protein [Sphingomonas sp.
           SKA58]
 gi|94423260|gb|EAT08290.1| transcriptional regulator, LysR family protein [Sphingomonas sp.
           SKA58]
          Length = 297

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 132/292 (45%), Gaps = 6/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDWD LRVF  VAR+     AA  L +  ++I+R++S LE  +G  LF        LT  
Sbjct: 2   FDWDDLRVFLAVARARKIAPAARALGIDATTIARRLSRLEKALGADLFEMGGGERALTAS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R              E++    + SG++R++     G  +L   +  F   +P I
Sbjct: 62  GLTLLRHAEGAESAALAAMEEVKGQEHRLSGQVRLSVAEGFGTWMLAPGMGAFNRRHPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L+  +  ++ S   AD A+ L +P Q   L  R+L    +H YAAP YL     P +
Sbjct: 122 RLDLVTASGFLNPSNREADMAVMLARP-QRGRLTVRRLGDYRLHLYAAPAYLDRAGHPTT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H LI +        E  ++L  V+  +     + L+  S     +    G+GI 
Sbjct: 181 SADLRHHVLIGYVPEFIFSPE-LDYLDEVEAGLE----AQLRATSINMQQRMIAEGAGIG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +LPD+I + +P L  IM D +  + + +      L++  ++ A   ++  + 
Sbjct: 236 VLPDFIGRRDPALTAIMTDAVEITRSFWLVMHGDLRHLARIGAVAEWLQERV 287


>gi|83718934|ref|YP_440950.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|257140396|ref|ZP_05588658.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83652759|gb|ABC36822.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 300

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 138/299 (46%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + ++L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQNELLAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVVFENRIEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPGFAATHGMPTE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    +IT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LDQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLE--PTLISENFLFLRQAILSGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++PDY+V D+     +V  ++      F   +Y  Y     +T     F +F+  +AR+
Sbjct: 237 IVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFVLDEARN 295


>gi|78063189|ref|YP_373097.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971074|gb|ABB12453.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 306

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLR+F  V    SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRIFRSVVEMRSFTRAADMHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L++ + E Q  + +P G LR+        N L   +  F   +P 
Sbjct: 61  TAERIYERCAAVLDELDSLEAEAQAPTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ + L  + ID+  +  D  I +   + + S + R +  I +   A P YL+    P+
Sbjct: 121 VRLDVTLTERPIDLVGEGYDIGIVVPYMLTNESTVVRLVERIPLVIVATPTYLRAHSRPV 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  +     + +    F         +  P    +  NS +   +  +   GI
Sbjct: 181 MPADLADHPFVPMSPSLRRPALSFR---VDGDLLTVPFRFDISSNSPVFNREMVMHDFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +V+    +  LV+++ D         +   Y        K+KAF ++
Sbjct: 238 GVVPKTLVQAELASGALVQLLADADLVDKFVEIKLAYANRALLPAKVKAFIDY 290


>gi|150395656|ref|YP_001326123.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027171|gb|ABR59288.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 327

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 129/289 (44%), Gaps = 6/289 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF    R  +FT AA +L ++Q+++S  I GLE ++G+ LF+R  R + LTE G + H
Sbjct: 17  LIVFEAAGRHQNFTRAAGELGMTQAAVSYAIRGLEDQLGVPLFHRVHRAVELTEAGERFH 76

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++  +  +++    + +  + +A +       +   L       P+I +++ 
Sbjct: 77  ADVSVGLGRIRKSAEDIRAKGRETN--VTLAASTAFASMWMLPRLARLREDLPEIDLRIQ 134

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +D+D+  +     IR   P Q        L    + A A   Y++    P S  +L 
Sbjct: 135 TSVRDLDLDEEPIPLGIRGGDPNQWPRYHAAVLADEVIQAVATHVYIETHGLPRSPADLI 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +HNLI   + + +  +   W A+        +   L +N Y+ ++Q  + G GIAL  ++
Sbjct: 195 RHNLIHLEEPVRRACDWTEWFASAGLTY-PAQGKRLAINDYVLVIQAVLAGEGIALGWEH 253

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +      +  LVR+ E V+      Y  +P +     + +  R+++  +
Sbjct: 254 LTARQVRSGALVRVGEHVLKTGQAFYVVWPRSRDLNSQARRVRDWLLEE 302


>gi|222033251|emb|CAP75991.1| LysR-family transcriptional regulatory [Escherichia coli LF82]
 gi|312946088|gb|ADR26915.1| putative transcriptional regulator, lysR family protein
           [Escherichia coli O83:H1 str. NRG 857C]
          Length = 242

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 3/240 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L++F VVAR  SFT AA +L +SQS++S  +  LE  + I+L  R  R +  TE G
Sbjct: 5   NFNELQIFLVVARERSFTKAASKLGVSQSALSHAMKALEERLNIRLLTRTTRSVAPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++         +LE     L + +  PSG +R++      ++L+   LK FL  YP+I 
Sbjct: 65  ERIIACLEPRIDELERELESLIQLNGAPSGNIRLSAGEHAARSLVWPKLKSFLREYPEIN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++DN  +DI     D  IRL + +    +  R    + M    +P Y      P + 
Sbjct: 125 VELVVDNGFVDIVDGRFDAGIRLGESVDKDMIAVRIGPDMRMAMVGSPAYFAANPAPETP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
            +L  H  I     +P     ++W    +      R+   L  N     +   + G GIA
Sbjct: 185 HKLQNHRCINM--RLPTAGGLYHWEFEREGKPFRVRVDGQLTFNLLPERIDAALSGFGIA 242


>gi|187477638|ref|YP_785662.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115422224|emb|CAJ48748.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 307

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 122/293 (41%), Gaps = 7/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR-GLTLTE 61
            DWD LR F  VARS   + AA  L +  ++++R+I  LE E+G  LF +    G  LTE
Sbjct: 2   LDWDSLRYFLEVARSQRVSAAARTLGVEHTTVARRIRALEAELGSLLFEKSRSAGFVLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   +   +  L      PSG +RI  T   G  ++     +F   YP 
Sbjct: 62  DGQRLFVHAEQLESTVHAARENLSGIGQAPSGHIRIGATEGFGSYVVTPLAADFQRRYPH 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + + +S   AD AI + +P Q    I  +L    +  Y  P YL       
Sbjct: 122 ITLDILPVPRFVSLSKREADLAITIERP-QRGPYICSRLCDYTLMLYGTPQYLARHPPIR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H+ I + D +      F+        +       L+  S ++     + G  +
Sbjct: 181 TRADLSGHSFIGYVDEL-----LFSERLRYLEDLLPNSRVVLRSTSVVAQYHAALQGQSL 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+LP +I   +  L  ++   +  + + +    E L    ++    +F+   A
Sbjct: 236 AILPCFIAAQDSRLKPVLGGDVAITRSFWMYCHEDLYRLKRMSLLWDFMRAAA 288


>gi|319760905|ref|YP_004124842.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330822809|ref|YP_004386112.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317115466|gb|ADU97954.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329308181|gb|AEB82596.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 307

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 133/300 (44%), Gaps = 12/300 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +R+F  +A S + T AA +  +++S++SR++  LE E G +L  R  R + LT+ 
Sbjct: 1   MDLNLVRMFIAIAESRNLTDAARRSGMTRSNVSRRLKALEREYGAQLLRRTTRHVELTQA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+    +  ++L+  Q ++++     SG++R+     LG   L+  + EF   +P++
Sbjct: 61  GRILYGHCQQAMNELQDAQRKIEQMHRTVSGEIRVRIPTGLGHFYLKPLILEFCKNHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-EP 180
           Q++L+++++  D+     D AI +   P+     +  K+  I       P YL+      
Sbjct: 121 QLRLVINDQIHDLVASKVDLAIHITSAPLVDH--VATKVCDIRWCLVCTPQYLQQHALHL 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +  LI    L      +F       + + +   + +Q   Y  +      G G
Sbjct: 179 EQPVDLKQARLI--APLALGQRVEFTGPGGAGKVLVQ-HGASIQSGDYQFLFNAASQGLG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IALLP Y V +     +LVR+++          +Y       + +    AF + +    R
Sbjct: 236 IALLPSYAVCEALKRGDLVRVLQRYEVMGIGNALYVVRASNRQPSAATVAFIDLLTTSVR 295


>gi|114048287|ref|YP_738837.1| DNA-binding transcriptional activator GcvA [Shewanella sp. MR-7]
 gi|113889729|gb|ABI43780.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 303

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 112/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L ++ +       L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTQLADATDRLLARSA--IGSLTVSMSPSFAIQWLVPRLSKFSEKNPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI          L   KL    +    +P  L   +     +
Sbjct: 126 RIKAVDTEASSLTDDVDVAIYYGLG-NWPGLRADKLRNEVLIPVCSPMLLNGPKPLSKPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKYHTLLH----DMSRHDWQAWFRQCGISDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV   ++V+      Y    +     GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWML 289


>gi|188590855|ref|YP_001795455.1| DNA-binding transcriptional activator gcva [Cupriavidus taiwanensis
           LMG 19424]
 gi|170937749|emb|CAP62733.1| transcriptional regulator of Glycine cleavage system operon, LysR
           family [Cupriavidus taiwanensis LMG 19424]
          Length = 308

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 121/297 (40%), Gaps = 13/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LR F   AR  SF+ AA +L ++  ++S QI  LE E+G+ LF RH + + LT  G 
Sbjct: 15  LTALRAFEAAARHESFSRAATELFVTHGAVSHQIRALEDELGMPLFERHGKRVALTPAGR 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +   ++      LQ  +     +L I+T        L   +  F+  +P++ +
Sbjct: 75  LYAERVRDALLQIADATRALQAGNRDK--RLTISTMPSFAARWLTPRIGSFIERHPELDV 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N  ++ + +  D A+R+        L   +L+        +P +    R P   Q
Sbjct: 133 ELLSSNTLVNFAHEEVDIALRMGSG-DYPGLYVERLLDDVFFPVCSPAF-NGGRLPGRPQ 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++    L+       +      W         EPR   L       ++Q    G GIAL+
Sbjct: 191 DMAGMPLLR-----GEGDPWKPWFDAAGLDWPEPRKGLLLE-DSSLLLQAASEGQGIALI 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +  ++     +VR+ +  I   + +YF       N  K++AFR ++  +   ++
Sbjct: 245 RSSLACNDLLSGRVVRLFDVSIPCPWLLYFVCAPGSLNLPKVQAFRGWLLPEIERFR 301


>gi|28869642|ref|NP_792261.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971229|ref|ZP_03399346.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301383922|ref|ZP_07232340.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302063624|ref|ZP_07255165.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131033|ref|ZP_07257023.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852884|gb|AAO55956.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213923982|gb|EEB57560.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato T1]
 gi|331019492|gb|EGH99548.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 294

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 119/287 (41%), Gaps = 8/287 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           RVF  +   GS   AAE L +S++ ++R ++ +E   G +L +R  R L LT  G     
Sbjct: 8   RVFIAINERGSLIAAAETLDMSRAMVTRYLAQMERWAGARLLHRTTRKLGLTAPGQATLL 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              ++    +   +       +P G +RIA +  L Q +L   +  +L  YP   +   +
Sbjct: 68  RCQQLLELADAVPLAADTHVDEPRGMVRIACSQSLAQAVLAQAVTAYLQRYPGTSVDFQI 127

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+ +D+  +  D AIR+   +   +LI R L        A+P YL     P   QEL  
Sbjct: 128 GNEAVDLVSERIDLAIRITNQL-DPNLIARPLGHCDSRVCASPAYLAAHGTPSRPQELSA 186

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           HN +T+        E           +  P    L  N  + +++    G+GIAL P + 
Sbjct: 187 HNCLTYSYFGKSLWE----FTRQHTQLSVPVGGNLSANDSVVLLEAAAAGAGIALQPVHS 242

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V     +  L+ +M D    +  ++  Y      +  L+   +F+  
Sbjct: 243 VAPLIASGKLIALMPDYQPRALGIHAIYTSRHHQSATLRTLLDFLAE 289


>gi|116052201|ref|YP_788955.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587422|gb|ABJ13437.1| possible LysR family transcription regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 303

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 123/290 (42%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++GS + AA +L +   ++SR++  LE ++ ++L  R  RG  LTE 
Sbjct: 1   MDLNALRMFVGVVQAGSLSAAAARLEIPLPTLSRRVRELEHQLAVQLLERSVRGTRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+   +     L   +  L     +  G+LR++             L  F   YPDI
Sbjct: 61  GMRLYENAARGVEILHEAEQALASDQARLKGRLRLSLPPGFEPWW--ELLGVFQRRYPDI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q+    + ID+  D  D A+R+   +   +++ R+L         +P  L+      +
Sbjct: 119 RVQVFTSERRIDLVEDGVDVALRVGA-VAHEAMVARRLFAYRHVLVGSPRLLEREGGMET 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +      G   P    +  WL  +     +PRI  L  N Y  +    +    + 
Sbjct: 178 LDDLRRFP---VGMWYPGGSGEGAWL--LGGQAVKPRI-VLATNDYAHLRARALDAELVT 231

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LP ++         L+ ++ +   P   ++  YP     +  ++ + +F
Sbjct: 232 ELPPFMAAAAVRAGQLIELLPEHPLPEQEIHLLYPSHRHPSTIVRCYLDF 281


>gi|119387306|ref|YP_918340.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377881|gb|ABL72644.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 298

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 120/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            WD  R F  V   GS + AA  L L+Q ++ R +  LE  +G +LF R   GL  T   
Sbjct: 7   SWDHWRSFLAVVEEGSLSGAARALRLTQPTVGRHVDALEDGIGARLFTRSRGGLDPTPLA 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L     ++    +           +  G +R+A    +G  +L   L  F   +P I 
Sbjct: 67  LALVSQARDMAMIADDLVRTASGERDELRGTVRLAAVDIVGTFVLPPMLAAFHERHPGID 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L L  ++ ++    AD A+R+ +P +  +++ R +  + +  +A   Y+     P ++
Sbjct: 127 IELALSTRNENLLRREADIAVRMVRP-EQQAIVARHVGFVRVGLFAHRRYVAAHGLPETV 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L  H LI          E      +             + +S ++ +     G GI  
Sbjct: 186 EALFSHPLIGIDQE-----EGLVAGISFGGHPLSRESFAFRCDSAVAQLMAVRAGFGIGA 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               +  D P LVR++ D++   + ++    E L++T +++   + +      +
Sbjct: 241 CHLGLAADEPELVRVLPDMVEFGYEMWIAMHEDLRDTRRMRLLFDHLAENLAAY 294


>gi|295688668|ref|YP_003592361.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295430571|gb|ADG09743.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 318

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 116/291 (39%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F+ AA++L ++  ++S+QI  LE  VG  LF R  +GL LT+   
Sbjct: 13  LNALRAFEAAARHLNFSRAADELSVTPGAVSQQIQNLEDYVGAALFKRTPKGLLLTDAAQ 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E + +L      L  +      +L +          L   L +F   +P + +
Sbjct: 73  TALPALREAFDRLAEAASLLTAAVDGR--RLTLTAAPSFAAKWLVPRLGKFEQAHPQVDV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L    + +D +    D AIR     +   L   +L+   +   A+P  L+        +
Sbjct: 131 WLSAGMEVVDFATGEVDMAIRYGSG-RYPGLEVVRLLHETVVPVASPELLEQN-ALERPE 188

Query: 185 ELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H L+  G  D    C +   WLA      G       + N    +++    G GIA
Sbjct: 189 DLAHHILLHDGSPDADDSCPDWAMWLAARGIK-GVDGARGPRFNQSSLVIEAAANGRGIA 247

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L    + +   D   LV   E      F  Y  +P+A     ++KAF N++
Sbjct: 248 LAKRTLAQADLDAGRLVIPFEASTAVDFAYYVVHPKAKGRLPQVKAFVNWL 298


>gi|206580866|ref|YP_002238471.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288935458|ref|YP_003439517.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290509495|ref|ZP_06548866.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|206569924|gb|ACI11700.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|288890167|gb|ADC58485.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
 gi|289778889|gb|EFD86886.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 300

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ L++F  V    SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+ 
Sbjct: 5   LDFNALKIFIAVVERDSFVGASKALEMPTSNVSRCISQLEDKLNLQLIERSTRHMKLTQA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   +PD+
Sbjct: 65  GHLLYTRAKPLLEALEQTETELTLRQMQFKGPLRICIPNEIGPVLLGSVVADFACQHPDL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I  + +    +   D  D A+ + R  +  S  I R LVTI     AAP  ++    P 
Sbjct: 125 EISCVTNLSGYESLRDDLDLAVIVSRGQMDDSDYIARHLVTIPCTIVAAPSVIQRYGTPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            IQ+ ++   IT  + +      + ++               +VNS     +  + G G 
Sbjct: 185 RIQQFEELPCITTVNALKGA--PWQFVNKKGGFETIKVNGRYRVNSGEMAGRAAISGVGF 242

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L     +   D+  L+ I  +       ++  Y +      K +A  +F+  + 
Sbjct: 243 AILSKQACQPYIDDGRLIEIEFEQSAAPLQLFALYSDRRYLPAKTRALIDFMHQRL 298


>gi|26986800|ref|NP_742225.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24981395|gb|AAN65689.1|AE016195_10 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 295

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 133/290 (45%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEQSLGTALFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ ++   P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQAIT-PLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  LI RKL    +  YA+  YL        
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQAYLDRAPPLRH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ I + D +      F+                 +  S ++       G GIA
Sbjct: 180 REDLARHSWIGYVDDL-----LFSQELLFLNSFCRVPNVVFRSTSVIAQQAAARAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LP+Y+ + +P LVR++    T   + + C    L  + +L+   +++  
Sbjct: 235 VLPNYMARHDPTLVRVLPG-ETIQRSYWICTRRELHKSVRLRVVWDYLLA 283


>gi|262273887|ref|ZP_06051700.1| transcriptional regulator [Grimontia hollisae CIP 101886]
 gi|262222302|gb|EEY73614.1| transcriptional regulator [Grimontia hollisae CIP 101886]
          Length = 292

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 126/297 (42%), Gaps = 12/297 (4%)

Query: 3   FDWDKL-RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GS   AA +L+ S S++S++++ LE ++G++L  R  R LT+T+
Sbjct: 1   MDWITCAKSYVTVVEMGSLAQAATKLNTSSSALSKRLAWLENQLGVQLLKRTTRTLTMTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++    +         E   +  + SG LR+   +  G  LL  N+ EFL  YP+
Sbjct: 61  AGRLFYQRGKLLLDDWTQLVSETTSTYGEVSGVLRVGAPLATGSRLLVNNIGEFLSTYPN 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           IQ++L        +     D  I R      S+S I  KL       +A+P YL      
Sbjct: 121 IQVELHTL-APGQLPDPNLDVVITRELADFNSASFIATKLFEFQPRFFASPAYLAQHPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +  ++L  HN + +G        +F     +               +  +++   V G G
Sbjct: 180 VEPEQLLHHNCLLYGSSSHPQEHEFELGRKLRLS------GNFVSPNPEALVNAAVAGLG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I L+ D  V+   D   LV ++ D+  P    Y  YP+   N  K + F +F+  K 
Sbjct: 234 IILVGDVTVRKELDQGLLVPVLPDLRQPKSAAYAYYPKLEYNHTKTRLFIDFLKQKV 290


>gi|163738462|ref|ZP_02145877.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161388383|gb|EDQ12737.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 292

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 124/287 (43%), Gaps = 6/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ +R F   A +GS +  A +L L+Q ++SRQ++ LE ++G+ LF R  RGL LT  G
Sbjct: 5   DWNHIRAFLATAETGSLSAGARKLGLTQPTLSRQVAALEADLGVLLFERLGRGLALTSAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L   +  +    E   +     +    G +RI  +  +   +L   L +     P + 
Sbjct: 65  HDLLNHSRTMGAAAEALSLAATGQAQAIEGTVRITASDVMSAYVLPPALHQLRRRAPRLT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I ++  N   D+    AD AIR  +P Q   LI R +   H H YAA  YL+    P S 
Sbjct: 125 IDVVAANDIRDLMRREADIAIRHVRPDQ-PELITRLVRESHAHFYAASSYLERRGRPQSP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++ +H+ + F DL                     +   ++  S L+  +    G GI  
Sbjct: 184 EDMSRHDFVGFADLERSIE-----FMAPLGIHLTAQNFRIKSTSGLASWELVKQGFGICP 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   +    P + R++  +   +F ++      L  + +++   + +
Sbjct: 239 MMTAVADPTPGIERLLPGLDPITFPIWLTTHRELHTSRRIRLVFDLL 285


>gi|134292859|ref|YP_001116595.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136016|gb|ABO57130.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 299

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 9/293 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+ DKLRVF  V  + SFT AA+   L++  +SR ++ LE   G +L +R  R ++LTE
Sbjct: 1   MDYIDKLRVFRTVVETRSFTRAADIHGLARPVVSRAVADLEARFGSRLLHRTTRQVSLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +++   + V  +L++ + +    + +P G LR+        N L   +  F   +P 
Sbjct: 61  TAERIYDRCAAVLDELDSLEAQALAHTREPEGLLRLVAHTTAALNRLVPLIAGFKAAHPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ + L  + +D+  +  D  I +   + S + I R +  I +   A P YL+    P 
Sbjct: 121 IRLDVTLTERPVDLVGEGYDIGIVVPYMLTSETTIVRLVERIPVVIVATPAYLRTHPRPE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L  H  +     + +    F      +  +  P    +  NS +   +  +   GI
Sbjct: 181 TPAALAGHAFVPMSPSLRRPALSFR---DGNDMVTVPLSFDISSNSPVFNREMVMRDFGI 237

Query: 242 ALLPDYIVK---DNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            ++P  +V+    +  LV+++E  D++     +   Y        K+KAF ++
Sbjct: 238 GVVPRTLVEPELASGALVQLLEGADLVDAFVEIKLAYANRALLPAKVKAFIDY 290


>gi|26986824|ref|NP_742249.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24981421|gb|AAN65713.1|AE016197_11 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 299

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 113/291 (38%), Gaps = 8/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LRVF   AR   FT AA +L  +Q ++S+Q+  LE ++G +LF R  RG+ LTE 
Sbjct: 8   LSLDTLRVFEAAARLRGFTAAALELGTTQPAVSQQVKRLEAQLGTRLFDRIYRGIELTEA 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     +    ++    +      +    L++AT        L   L+ F   YP +
Sbjct: 68  GQLLFEQVHQGLQSMDDGIAQAGGRGQRE--VLQVATDFAFAAFWLMPRLQRFHEAYPQV 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+   +   +     D A+             R L    +    +PH +    + LS
Sbjct: 126 DVSLVTGERSQGMLRPDIDVAVLFGDGRFHQG-ESRWLFDEEVFPVCSPHLI--HGKALS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +  L+           D+  +         P    L+ ++Y  ++Q  + G G+A
Sbjct: 183 AVALQRLPLLHLKGEQASRWFDWAGVFRGFGVESSPPAGQLRFDNYTLLIQAAIAGQGVA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   ++V    +   L R +E  +      Y   P   +    ++ F +++
Sbjct: 243 IGWAHLVDGLVEQGLLCRPLEGSLRSERGYYVVLPPRKRRGALIERFVDWL 293


>gi|218675955|ref|YP_002394774.1| Transcriptional regulator, AsnC family [Vibrio splendidus LGP32]
 gi|218324223|emb|CAV25484.1| Transcriptional regulator, AsnC family [Vibrio splendidus LGP32]
          Length = 309

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 128/294 (43%), Gaps = 16/294 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V + GSFT AA    +  SS+S+QI  LE ++G++L  R  R  +LT  G
Sbjct: 3   NTNQLLLFLDVVQQGSFTKAATLHDMDNSSLSKQIKKLEQDLGVQLLNRSTRSFSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +   T  +   +   Q        +P G LRI + I  GQ  LQ  + +F+  YPD+Q
Sbjct: 63  EDILAQTYVLKDTINQIQGIADSYQSEPKGVLRITSPIYFGQQYLQPIITQFMRKYPDVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L LD+K  +I     D A R  K ++ S+LI +K+   +    A+  ++K   EP + 
Sbjct: 123 IVLSLDDKIANIIAGQFDIAFRFSKLVE-SNLIAKKIADSNFMLVASNDFVKEHGEPKTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCVLG 238
           Q+L     + + +         + L   + P G            +V+   +++     G
Sbjct: 182 QDLLSLPAVIYTNGDMTV----DHLRISEEPHGNIFQSLTIRGNYKVSDVRTMVSCVKDG 237

Query: 239 SGIALL---PDYIVKDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFR 287
            G   L     Y       LV ++ D    +    +Y  YP   + T  +K F 
Sbjct: 238 LGYGFLDQSNLYASMKELGLVTLLPDYAISTVDTAIYAVYPHRKQ-TKLVKEFI 290


>gi|28870046|ref|NP_792665.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853292|gb|AAO56360.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 304

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 123/293 (41%), Gaps = 7/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F  +AR  SF  A  ++ +S S++S  + GLET +G++L  R  R +TLT   
Sbjct: 7   NLADIVYFLAIARHQSFRKAGLEVGISASALSHAMKGLETRLGVRLLNRTTRSVTLTAAD 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L  + S   + +      L     +P+G++R+    D  + LL   L  F+  YPDI+
Sbjct: 67  EELQGLISAPVNDIGQALETLNRLRDEPAGRIRLNVLSDGAKLLLGPVLPVFIDRYPDIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L + NK +DI  D  D  IR    +    + QR    +      AP YL+    P   
Sbjct: 127 VDLTVTNKMVDIIGDGHDAGIRFGGTVPEDMIAQRLSPDVAWAVVGAPAYLERFGTPKHP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L +H  +    +       ++W  + D    E      + ++     +   + G+G+ 
Sbjct: 187 EDLHQHRCL---RVRLGNAHIYHWQFSKDGQRMEIDAPGAITIDEARVGVAMAMRGAGLM 243

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +   +V+      +L R++ED        +  Y    +    L+   + I  
Sbjct: 244 YVLASVVERQITEGSLQRVLEDWTHYDPGFHIYYSSFRQVPVGLRLLIDLIRE 296


>gi|88861351|ref|ZP_01135981.1| transcriptional regulator (postitive) of cleavage of glycine (LysR
           family) protein [Pseudoalteromonas tunicata D2]
 gi|88816617|gb|EAR26442.1| transcriptional regulator (postitive) of cleavage of glycine (LysR
           family) protein [Pseudoalteromonas tunicata D2]
          Length = 303

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 124/290 (42%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR+ SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALKAFEAAARNLSFTKAAEELFVTQAAVSHQIKTLEDHLGLKLFLRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E++ +L      L        G + ++ T       L   L  F   +P+I I
Sbjct: 68  AYFLDIKEIFGQLVDATERLLARGA--KGSITVSLTPSFAIQWLIPRLNLFNEAHPEIDI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++     + +   D  D AI   +    + +   KL T ++    +P  L   +  + I 
Sbjct: 126 RIKAQELEENSLTDDVDVAIYYGRG-HWNGVQTHKLHTEYLVPLCSPMLLNGPKPLMHIN 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H L+   D+  K  +   W+ T      +     +  +    ++Q  + G G+AL 
Sbjct: 185 DLENHTLLH--DMTRKNWK--TWMKTAGVRNIKVNTGPI-FSHSSMVLQAAIHGQGVALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + +   D   LV     ++      Y    E+    GK+ +F+ ++ 
Sbjct: 240 NSVLARPELDAGRLVIPFSHILESKNAYYLVCRESQTELGKIVSFKEWML 289


>gi|330943618|gb|EGH45950.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 308

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 7/300 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D L++F   A  GS + AA  + +S +  S  +  +E ++G +L  R  R L LT
Sbjct: 1   MMLRFDDLQLFVRAADLGSLSAAARVMDMSAAVASAALKRIERQLGTRLLARSTRSLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G             LE  +  L  S  +  G L+++   DLG+N+L   L EF   +P
Sbjct: 61  AEGEGFLEYARAALGSLEEGRRLLASSQDRCEGVLQLSAPSDLGRNVLLPWLDEFHQQHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCRE 179
            + ++L+L ++  D+     D A+R  +P + SSL+    L        AAP YL+   E
Sbjct: 121 QLTVRLLLGDRIADLFRQPVDVALRYGEP-EDSSLVALPVLPDNRRVLCAAPSYLQRHGE 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  +++L +HN + F  ++   + D   L    R I          +    + ++ V G 
Sbjct: 180 PHQVEQLAQHNCLLF--MLGDRVHDRWTLNDGKREISLTVSGNRFSDDADVVRRWAVAGE 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G+A      V  +    +L  +M D+I     +        + +  +      +  + + 
Sbjct: 238 GVAYKSWLDVAADVRAGHLKVLMPDLIGERAPLNLLCAHRAQLSKPVILLLEMLRSRCKQ 297


>gi|251790270|ref|YP_003004991.1| LysR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538891|gb|ACT07512.1| transcriptional regulator, LysR family [Dickeya zeae Ech1591]
          Length = 306

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 115/300 (38%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+G F  AA    +S S +S  +  LE ++ I+L +R  R +  T
Sbjct: 1   MHVDLKDLEAFVAVARAGGFRDAARANGVSASGLSEAVRRLEAQLAIRLLHRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L         ++E     +     +P+G L++   +   + +L G +  FL  YP
Sbjct: 61  EAGQSLLARLVPALTEVENALDVVNGFRDRPTGTLKLNVPVSAARLVLPGLVAPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++++   +D+     D  IR  + ++   +I   +      +   A+P YL    
Sbjct: 121 DIKLEVVVEESFVDVLAAGCDAGIRYGERLEQD-MIAVPIGPRSQRLAIAASPAYLARYG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYC 235
            P   ++L  H  +      P               I       L V        ++   
Sbjct: 180 HPAHPRDLVAHACL--RGRFPSGTMPLWEFECDGEVIHVDPAGPLVVQIGGGTDLLIDVA 237

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V G GI  L +  ++ +     L  ++          +  YP        L+AF +FI  
Sbjct: 238 VAGGGIVYLFEDWLRPHLANGELEPVLAPWWQVFPGPFLYYPGHRLIPTPLRAFIDFIKA 297


>gi|221212252|ref|ZP_03585230.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168337|gb|EEE00806.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 301

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 120/294 (40%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSFT AA++L ++  +ISR +  LET +G  LF R  R + LT+ G 
Sbjct: 8   LNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLETWLGKPLFERLNRRVVLTDAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++       Q+        LR+          L   L  F + +P I++
Sbjct: 68  AYLAEVGASFDRI--ALATAQQFGQGQQRVLRVNAPATFSLRWLVPKLSSFQVAHPTIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ ID   D AD  IR   P      +  + ++       AP  L+      +  
Sbjct: 126 RLSTSNEPIDKLRDSADLIIR-GGPQTIDGYVADEFLSEVRLPVCAPKLLERTPL-RTPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WLA    P   PR   L +  +   +Q  + G G+A+ 
Sbjct: 184 DLANFTLLHAATYPGMWPE---WLAAAGCPNLVPR-HALTLEHFYLTLQGALDGLGVAMG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V D+     LV+       P++  +   P    +   ++AFR+++ L  R
Sbjct: 240 PIALVADDIAEGRLVQPFSGPALPAWRYFTYVPATRIDDEAVRAFRDWLKLAGR 293


>gi|115358894|ref|YP_776032.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284182|gb|ABI89698.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 299

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 131/293 (44%), Gaps = 14/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F  AA++L ++Q ++++Q+  LE  V ++LF R  RGL LT +G 
Sbjct: 13  LNALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDVVAVQLFRRLPRGLALTREGL 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           +      L E        L ++TT       L   L +F  L+PDI++
Sbjct: 73  EYFSSVQRALQIISDATDALGERPT----VLAVSTTPSFASKWLIPRLADFGRLHPDIEV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D +      D  D AIRL KP   + L    L  + + A A+P  L +     +  
Sbjct: 129 RVIADERLASFRADGVDIAIRLSKPPFPAGLAAELLAPLDIFAVASPKLLDSGPPIRTPA 188

Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H L+    DL P+ +E        D P   PR      +  L  +   V G GIAL
Sbjct: 189 DLSTHALLHDAHDLWPEFIEKLGGKGRAD-PTKGPR-----FSQSLLAIDAAVAGQGIAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + +V+ +     L R+ +     S   Y  +P+A  ++  L+A R ++F +
Sbjct: 243 TSEPLVERDIAEGRLRRVFDFSFPMSLGFYVVFPQANAHSEALQAMRRWLFAQ 295


>gi|159185904|ref|NP_356814.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141038|gb|AAK89599.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 301

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D++ +  F +VAR+  F  AA    +S S++S  I  LE E+G++L  R  R +  TE G
Sbjct: 3   DFNDIGAFLLVARASGFRQAARASGMSSSALSDAIKRLENELGVRLLNRTTRSVLPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L R     + ++ +   ++     + +G L++   +   + +L   +  FL  YPDI+
Sbjct: 63  AELLRRVDPAFAEIRSALDQISGDRDQVAGSLKLNVPVSAARLVLPDIVPPFLAAYPDIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCREPL 181
           ++++ D   +DI     D  IR  + ++   +I   +          AAP Y+     P 
Sbjct: 123 LEILTDENFVDIISAGCDAGIRYDERLEQD-MIAVPIGPRAQRFALAAAPGYIAARGRPT 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL--QVNSYLSIMQYCVLGS 239
             +EL +H  I  G    + +  + +    +  I +P    L          +   +   
Sbjct: 182 HPRELLEHACIR-GRFAGRAIPPWEFERDGETMIIDPPGQLLVQSGGGTDLGVSAAIADM 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+  L +  ++ +     L  ++E         Y  YP        L+AF +F+
Sbjct: 241 GVIYLFEDWLEPHLASGALEPLLEPWWLSFSGPYLYYPGRRLVPAPLRAFIDFV 294


>gi|194364712|ref|YP_002027322.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194347516|gb|ACF50639.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 299

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 126/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+ F  VAR GSFT AA QL +SQS++S  + GLE  +G++L  R  R ++ TE G
Sbjct: 5   NLNDLQAFVHVAREGSFTRAAAQLGVSQSALSHAMRGLEERLGVRLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L    +    ++E     L E   +P+G +RI  T    + +    L   L  YPD++
Sbjct: 65  ARLLDTLAPRLAEIEDELAALAEYRERPAGTIRINATGHAAEYIAWPRLAPLLQQYPDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  D    DI  +  D  IRL + +    +       + M    AP Y      P   
Sbjct: 125 VELTTDYGLADIVAERYDIGIRLGERLARDMIAVPVSPPLRMRVVGAPSYFHQYVVPRHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  HN +T    +P       W    D      R+S     NS        + GSG+A
Sbjct: 185 HDLANHNCVTL--RLPTHGGLMPWDFGQDGNELSVRVSGQWIFNSMGMTRAAALAGSGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+  V+   D+  L  +++D        Y  YP     T  ++   + +
Sbjct: 243 WLPEDQVQPMLDDGRLQSVLDDWCPHFDGYYAYYPSRRHVTVAMRTVLDAL 293


>gi|330969869|gb|EGH69935.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 298

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 123/297 (41%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  V  +  F  AA     S SS+S  I  +E  +G++L  R  R +  T
Sbjct: 1   MTTDIQDLLAFVAVVNARGFREAARLSGKSASSLSDAIRRMEARLGVRLLNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L         ++E+    + +   +PSG LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGARLMERIVPALGEVESALDVVNDFRDRPSGTLRLNVPVSAARLVLPSIITPFLQTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++ +   +D+     D  IR  + ++   +I   +          A+P YL+   
Sbjct: 121 DIRLEVVTEESFVDMLAAGCDAGIRYDERLEQD-MIAVPIGPRFQRFATAASPAYLQARG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCV 236
            P   ++L  H  +  G      +  + +    D    +P   ++     ++   +Q  +
Sbjct: 180 RPEHPRDLLAHACLR-GKFPSGVIPLWEYERDGDTVKVDPTGPLTVRIGGAFDLTVQAAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+  L +  ++   D+  L  I+E         Y  YP        L+AF +FI
Sbjct: 239 DGLGVVHLFEDWLRPHLDSGALEPILEPWWQRFTGPYLYYPGRRYLPSPLRAFIDFI 295


>gi|218663778|ref|ZP_03519708.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 293

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 131/290 (45%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    A+++L L+ +++SR+++ LE  +  +LF R   G  LT +
Sbjct: 1   MNWDDVRIFLAVARTGQILAASKRLGLNHATLSRRLTSLEEALKTRLFIRRTNGCELTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  ++   Q  L  +    +G +R+      G + L   +   +  +P +
Sbjct: 61  GGVFLHAAERMETEMLAVQANLGHTDTAIAGTVRVGAPDGFGVSFLAPRMGRLIERHPAL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +IQL+   +   +S   AD AI L +P +   L+  KL    +  YA+  YL     P  
Sbjct: 121 KIQLVPVPRSFSLSQREADIAITLERP-EQGRLVFSKLTDYTLGLYASRDYLAAHGGPGD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L  H  I + + +      F         +     +  ++++ +   +    G+GI 
Sbjct: 180 VEALKAHPRIGYVEDL-----LFTASLNFSGEVMRSWDAGFEISTAIGQTEAVRSGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +L DYI +  P L RI+ ++       +  Y E  ++  ++++  +F+  
Sbjct: 235 ILHDYIARQYPELQRILPEISI-RRAYWTTYHETARDLVRVRSVVDFLQE 283


>gi|167617742|ref|ZP_02386373.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 300

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 136/299 (45%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + ++L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQNELLAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVVFENRIEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPGFAATHGMPTE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    +IT   +  +              + EP    L   ++L + Q  + G G+ 
Sbjct: 180 LDQLFDAPVITSAVVGRQLRVAAYLGDERHEVLLEP---TLISENFLFLRQAILSGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++PDY+V D+     +V  ++      F   +Y  Y     +T     F +F+  +AR+
Sbjct: 237 IVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFVLDEARN 295


>gi|317406656|gb|EFV86826.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 308

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 140/291 (48%), Gaps = 7/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF   A +GSF  AAE+L+L++S++ + I+ LE  +G +LF+R  R  +LT+ G   +
Sbjct: 14  IEVFVQAAEAGSFALAAERLNLTRSAVGKSIARLEARLGARLFHRTTRQQSLTDAGQAYY 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +L   + EL      P G+LR++  +  G++ +   L+E    +P +QI++ 
Sbjct: 74  DRCVRALAELYDAEAELDSGRRSPQGRLRVSAPVVFGRHCVAPVLRELAARHPQLQIEIS 133

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ +D+  +  D  IR+     S+SL+ R+L    M   A+P Y+     P ++ E+ 
Sbjct: 134 FNDRVVDLIEEGYDLGIRIGALPDSASLVARRLGLQTMGIGASPAYIAAHGRPQTLDEMR 193

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLPD 246
           +H  + +       +E    L   D  + + R+   L+++   +I    + G+G+A LP 
Sbjct: 194 QHVGVAYA---RGGVEKGWSLMEADGEVVQLRVPPRLRMDDLQAIADAAIAGAGLAWLPC 250

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +++        L  +M      +  V+  +P+A     K +   + +  + 
Sbjct: 251 WMLSHYVRTGELDVLMHGDRMAAQPVHAVWPQARYLPSKTRTAIDALAERV 301


>gi|261210881|ref|ZP_05925171.1| transcriptional regulator [Vibrio sp. RC341]
 gi|260839856|gb|EEX66456.1| transcriptional regulator [Vibrio sp. RC341]
          Length = 311

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 135/294 (45%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S   D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R+++ L LT
Sbjct: 10  LSMKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L    +E++ ++E  Q +++++     G++ I+  +   ++ L     EF   +P
Sbjct: 70  KEGEQLFHTYAELFAEIERKQDQVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFSEQHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ +++ + +     +    D A+R   P   S  + RKL        A+P +       
Sbjct: 130 NVTLRMQVSSGLDYFTQRDLDIALRFG-PQPESDWVARKLARNPSVLCASPTFAATL-SL 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              Q+L    L++    +P   +  +     ++ +     + L  +   +I+Q  + G G
Sbjct: 188 SHPQQLTHSPLLSLNHKLPWIFQHRH----SEQKVQFVPAARLCSDELDTIVQATLQGMG 243

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           IA LP  ++    +   LV ++ +       VY  +P+      + +A  ++I 
Sbjct: 244 IARLPRGLMAPLLNEGKLVELLPEWDIEGADVYLLHPQRKFLPERTQALIDYII 297


>gi|167584329|ref|ZP_02376717.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 302

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 132/299 (44%), Gaps = 10/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++ F   A   SF+ AA+ L + +++I+  I  LE  +G +L  R  R + LT 
Sbjct: 1   MDRFQEMQAFVRTAERSSFSRAADDLDIPRATITNLIKRLELRLGTRLLERTTRQVRLTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   ++  +   +++   P G L       L ++ +   L  FL  YPD
Sbjct: 61  DGEAHYHRCVRLLADIDEAEGAFRDA--MPKGLLVANLQGTLARHFVVPALPAFLSRYPD 118

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +  D++ +D+  +  DC +R    ++ SSLI R++  +     A+P YL    EP 
Sbjct: 119 LRLHIGEDDRLVDLVREGVDCVLRAG-VLRDSSLIGRQIAAMEQVTVASPAYLDRFGEPA 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           ++ +LD H  + +  +     +      TVD  + E R+ S + V          + G+G
Sbjct: 178 TLADLDAHFAVDY--VSSATGKPVPLEFTVDGAVVEVRMRSTISVTGADLYTGSALAGAG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  +P Y +     +  L  ++     P   V   Y  + + + +++ F  ++    R 
Sbjct: 236 LIQVPRYRIAGELAHGRLKVVLPACPPPPMPVSVLYLHSRQLSPRVRIFVQWLEEVFRQ 294


>gi|86137229|ref|ZP_01055807.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85826553|gb|EAQ46750.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 292

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 132/295 (44%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHIEAIEARLGVKLFQRHARGYTPTESG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+    + SG+L + T++    +LL   L EF  ++P + 
Sbjct: 63  QDLLRVAQATDDQFSQLVGRLKGQGDEVSGEL-VVTSLSSMSHLLVPVLTEFQQMHPGLV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+ +   +   +    A  A+R          + +      +  +A+  Y+        I
Sbjct: 122 IRYLTGERLFRLEYGEAHVALRAGNAPDQPDNVVQPFARQRIGLFASQSYVDRHGVLEGI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +   +   +   +  WL    R          + +  +++ +  + G+GI  
Sbjct: 182 DDLKNHQFVGTDNENSRAPFN-KWL----REHTNEETIIFRCSDGVAMQEAIMAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +  +     P+LV++ME       +++      L  T K+++F +F+  +++ W+
Sbjct: 237 MSTWEASRRPDLVKMMEPREEWEGSLWLVTHVDLHRTNKVQSFLSFLKERSKAWQ 291


>gi|330810407|ref|YP_004354869.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378515|gb|AEA69865.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 317

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 121/302 (40%), Gaps = 9/302 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  V  +  F   A     S SS+S  +  +E+ +G++L  R  R +  T
Sbjct: 1   MATDIQDLLAFVAVVNAKGFREGARLSGKSASSLSDAVRRMESRLGVRLLNRTTRSVVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L         ++E     + +   +PSG LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGARLMERIVPALGEVEAAMDVVNDFRDRPSGTLRLNVPVSAARLVLPAIITPFLKSYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++ +   +D+     D  IR  + ++   +I   +          A+P YL    
Sbjct: 121 DIRLEVVTEESFVDMLAAGCDAGIRYDERLEQD-MIAIPIGPRFQRFATAASPAYLDARG 179

Query: 179 EPLSIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            P   ++L  H  +T  F        E      T+      P I  +   +    +Q  V
Sbjct: 180 RPEHPRDLLGHACLTGKFPSGALPLWEYERDGETMSVDPSGPLIVRI-GGAMDLAVQAAV 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI  L +  ++   D+  L  ++E         +  YP        L+AF +FI  +
Sbjct: 239 DGLGIVHLFEDWLRPYLDSGALEPVLEPWWQRFTGPFLYYPGRRYLPSPLRAFVDFIHAQ 298

Query: 294 AR 295
            R
Sbjct: 299 QR 300


>gi|88857041|ref|ZP_01131684.1| probable transcriptional regulator [Pseudoalteromonas tunicata D2]
 gi|88820238|gb|EAR30050.1| probable transcriptional regulator [Pseudoalteromonas tunicata D2]
          Length = 300

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 118/286 (41%), Gaps = 7/286 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           +F  V   GS   AA+ L ++ S+IS+ I+ LE E+GI+L  R  R + L+E G + +  
Sbjct: 14  IFCQVVDCGSMGKAAQSLGMTTSAISQHITRLEMELGIRLLNRTTRKINLSEAGERYYAQ 73

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
             +     +  +  + E     +GKLRIA  + L    +   L   ++  P ++I +   
Sbjct: 74  GKKALEAAQAAENSVHEIKSALTGKLRIALPVGLSTQPIAQALSSVVIENPALKISIYAK 133

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  ID      D  I +  P + S L    L     H YA+P YL     P +  EL +H
Sbjct: 134 DGTIDPIAKGIDIIIDVGTP-KDSQLYFYPLGQCGKHIYASPSYLARRGYPSTPAELLEH 192

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           + +         + D +  A           S ++ N   S++ +   G GIA+LP+  +
Sbjct: 193 SWLGLS--YNGVLSDIHLSAKHHPSTDIKPESQMEFNDLNSLISHVCHGLGIAMLPELEI 250

Query: 250 KDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           ++      LV+++         +Y           K+K     +  
Sbjct: 251 QEQLSRGELVKLLPSWHIAPHQIYALTTSN-NAPYKVKKVLEVLKA 295


>gi|254252346|ref|ZP_04945664.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124894955|gb|EAY68835.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 424

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 125/299 (41%), Gaps = 6/299 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D  D ++VF      GS   A  +L  S +++SR I+ LE   G  L YR  R + L+
Sbjct: 116 AMDRIDAMKVFVATLDEGSLAGAGRRLGRSPAAVSRAIAFLEAHTGTALLYRTTRTIRLS 175

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +       +   LE   + + +    P G L I   +  G++LL+  L EF+  +P
Sbjct: 176 EAGERYAAACRRILADLEEADMLVADERSAPRGLLTITAPVAAGEDLLRALLDEFIDRHP 235

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I+L L ++ + +  +  D A+R+   +  S+L+   +  +     A+P YL      
Sbjct: 236 AVSIRLQLLDRPVSLIDEGIDVALRIAH-LADSTLVAVPVGAVRRVVVASPGYLAAHPPI 294

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L +H +I+           F        P          VN+  + +   V G G
Sbjct: 295 ETPADLAQHRVISMTHFGLDSWS-FPPSGQSALPQVVQFAPRFIVNTIRAAIASAVAGHG 353

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  L  Y V D   +  L  ++ D       V+   P    +  K++AF +F   + R+
Sbjct: 354 VTRLFSYHVADAVKDGALRIVLRDSEHAPLPVHLLTPYGRLSVPKVRAFVDFAAPRLRE 412


>gi|254254667|ref|ZP_04947984.1| Helix-turn-helix protein [Burkholderia dolosa AUO158]
 gi|124899312|gb|EAY71155.1| Helix-turn-helix protein [Burkholderia dolosa AUO158]
          Length = 314

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 135/295 (45%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL ++ S+ SR +  LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDTGSITAAAQQLDVTVSAASRTLGRLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E  + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQDARAIIESVENAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D A R+ + ++ S+L  R++ +  +   A+P Y++    P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAFRIGR-LKDSTLHSRRVGSSRVRILASPAYVEARGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L KH L+ F    P+ +  +  L T   P           +S  ++ Q  + G+G
Sbjct: 180 RKVDDLRKHTLLGFTQ--PESLNVWPILGTDGEPYRIEPDVW--SSSGETLRQLALEGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIF 291
           I  L D++    +D   LV ++          ++  Y      + ++ +F +++ 
Sbjct: 236 IVCLSDFMTAHDRDAGRLVPVLARQTLDVRQPIHAVYYRNTAISSRIASFVDYLV 290


>gi|289662419|ref|ZP_06484000.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 310

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 121/273 (44%), Gaps = 8/273 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
             L + +S +SR+IS LET++G++L  R  R   +T+ G+ +HR    +  + +  +  +
Sbjct: 1   RALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVGTSVHRHAQTMLAEAQAAREVV 60

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
              S +P G +R++  + L Q  L   L +FL  YP +++QL + N+ +D+  +  D A+
Sbjct: 61  DRLSAEPRGLVRVSVPVSLAQIQLPKLLPQFLAKYPKVRLQLNISNRRVDVINEGYDIAL 120

Query: 145 RLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH-NLITFGDLIPKCM 202
           R+R  +    SL+ R    +     A+P YL     P    EL  H  + T  D   +  
Sbjct: 121 RVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRTGRPKDPSELANHTTMSTSEDEAHQRW 180

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
           E       + R   +PR++      +  +      G GI +LP+ +  +   +  L  ++
Sbjct: 181 ELHGPNGEMRRVDLQPRLAGF---DFPLLQSMARDGFGITMLPETVCAEAVRSGELEVVL 237

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                P    +  +         ++ F +F+  
Sbjct: 238 PHWSLPQGICHAVFASRRGLLPAVRVFIDFLAE 270


>gi|86748062|ref|YP_484558.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86571090|gb|ABD05647.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           HaA2]
          Length = 332

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 135/293 (46%), Gaps = 7/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + +DW+ +  F  VAR  S   AA +L +  +++SR+I  LE  +   LF R   G +LT
Sbjct: 27  IRYDWNDVVYFLEVARQRSLVRAAAKLKVDHTTVSRRIRELERSLNSTLFKRSKSGFSLT 86

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L +    +  +       +   +    G +RIA    +G   L   + +F  +YP
Sbjct: 87  EIGMRLLQYAEGMESQANAIVEAIGTDTADAGGAVRIAAMEGIGSFYLTPCIVDFNKIYP 146

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQI+LI D + +D+S   AD  +   +P     L  +K+    +  YA+  Y +   EP
Sbjct: 147 SIQIELITDTRLLDLSRREADIFVSFFRP-HGKRLSIKKVGEFRISLYASNRYFEGRSEP 205

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + +EL+ H  I F +      E+  WL+ V R    P  +  +  S ++       G G
Sbjct: 206 RTQKELEDHAFIDFIEDHIYSKEN-RWLSDVLR----PPHTIFRSTSLVAQSIAVSAGQG 260

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA+LP Y+      L  +M ++ T +  ++    E L +  ++KA   F+  +
Sbjct: 261 IAMLPTYVASGRSELRPVMPELFT-TRDIWLSVHEDLLHIARIKAVITFLEER 312


>gi|224159640|ref|XP_002338103.1| predicted protein [Populus trichocarpa]
 gi|222870915|gb|EEF08046.1| predicted protein [Populus trichocarpa]
          Length = 314

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 131/291 (45%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L +  +VA  GS + AA  L +S S++S+ +S LE  +G++L  R  R L LT +G 
Sbjct: 13  FAELEMLILVAERGSLSAAARHLGISPSAVSKSMSRLEARLGVQLLQRSTRRLHLTPEGC 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      V   LE  +        +P G +RI T+   G+ LL   + + L  +P + +
Sbjct: 73  QLFERGKRVLADLEELEA-CVAVRSEPRGLVRINTSSSTGKMLLVPLVPQLLQRHPGLSL 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +D+     D A+R  + +  S ++ R L        A+P YL     PL   
Sbjct: 132 ELSFTDQIVDLVEAGTDIAVRWGQ-LPPSDMVARLLGHTRQVILASPQYLARMGRPLHPD 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  +  G    + +  + +L    R +       ++VN    + +  + G+G+A L
Sbjct: 191 ELGHH--VRLGWSYQRAIPHWPFLVDGQR-VAVDIGEVVRVNDGDVMRELALHGTGLARL 247

Query: 245 PDYIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFI 290
             Y    +     LV ++E+  T     ++  Y  +  +   + +A  +F+
Sbjct: 248 SLYHAWADVLAGRLVPVLEEFNTGDLEPIHAVYLGKPDRLPPRTRAVLDFL 298


>gi|118593494|ref|ZP_01550874.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118433973|gb|EAV40631.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 305

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + +F  +AR  S   AA  + L  ++++R+++ LE  VG +L +R AR   LT  G 
Sbjct: 2   LDDIALFVHIARHRSLAKAAAHMGLPAATVTRRLAKLEETVGTQLVFRSARKFELTGAGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++    ETT   L        G L+ A   ++   +L+     FL  YP+I++
Sbjct: 62  AYFEAFADLVQNAETTLDGLSADLHGLRGALKAAAPTNISIGILEPMWSGFLKAYPEIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L N++ D+     D A+R   P     L Q++L  +     A+P YL+    P + Q
Sbjct: 122 TLVLSNENKDLLEHKVDIALRAG-PQTDERLYQKRLGVVATVLVASPAYLEEAGAPETPQ 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++ +H ++    L    +               P  + + V+      Q    G GIALL
Sbjct: 181 QISEHKVVRVSTLPQWQLTH----RETGALETVPLDARVVVDDISLARQLAGDGHGIALL 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   + D+     L  ++ +       ++  +P       +++   +++
Sbjct: 237 PVSEISDDLITGRLKPVLANWQGQKRDIFAVWPTGRLLNARVRCLLDYM 285


>gi|85712372|ref|ZP_01043422.1| transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
 gi|85693815|gb|EAQ31763.1| transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
          Length = 300

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 137/298 (45%), Gaps = 8/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR+F   A S SF  AA +L +S  +++R +  LE   G  LF+R+ R + +T
Sbjct: 1   MLNRLEMLRIFCTAAESRSFKEAANRLGISPQAVTRAVKELERLQGELLFHRNTRHIQVT 60

Query: 61  EQGSKLHRVTSEVYHKLETT-QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G K   +  E    ++   Q  +  S  +  G++RIA  +  G   L   L E   ++
Sbjct: 61  LVGEKFAVIAKERLRAVDELFQTSVPNSGNELQGRVRIAAPVGFGHKCLMPALLELSTIH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I L L ++ +D+  +  D  IR+   ++ S  I R+L  I+M+  A+P  +     
Sbjct: 121 PQLDIDLTLSDERVDVVDEKIDIGIRIGF-MRDSRFIARQLTKINMYVVASPDLINRVGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P SI++L+   +    D      + + W+ ++DR    P I+  +     + +     G 
Sbjct: 180 PASIEDLNHLPVTGLVD--RNTGKLWPWVFSMDRQ-WTPSITRFRSADAEAELMGVQNGL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G A +PD+  +D      LVR++E++    + +Y   P+      +++   + +  + 
Sbjct: 237 GFAQIPDFSGQDLLRQEKLVRVLEEIEPVPWDLYIYRPQRGPVPQRIRLVFDHLVSRL 294


>gi|110643768|ref|YP_671498.1| transcriptional regulator YhjC [Escherichia coli 536]
 gi|110345360|gb|ABG71597.1| hypothetical transcriptional regulator YhjC [Escherichia coli 536]
          Length = 306

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 3/240 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARSLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G G+
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLAAGIAGLGL 262


>gi|13475966|ref|NP_107536.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14026726|dbj|BAB53322.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 300

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 123/286 (43%), Gaps = 5/286 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + VF      GSF  AA  L LS   + + +  LE  +G++L  R  R  +LT+
Sbjct: 1   MDRLESMAVFVKAVDLGSFAAAAVALDLSGPMVGKHVRFLEDRLGVRLINRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  + E  +    +   +P G+LR+      G++ +   L +    YP 
Sbjct: 61  FGRAYYERCRVVLAEAEAAEALAADQFSEPRGRLRVTMPAHFGRHCVTPVLLKLARHYPM 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++  D++ D  D AIR       + +I R++    M   AAP YL+   EP 
Sbjct: 121 LELDLSLSDRFADLAEDGFDLAIRTGDLEDKAGVIARRVARQGMVVCAAPAYLRRHGEPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I++L  H  I +  L  + ++ + +               L+++   +I    V G G+
Sbjct: 181 RIEDLADHQAIVYRRL-GQVVQPWLFAREGQPAQEIVPSGRLRLDDLDAIADAAVDGMGL 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           A LP ++V++      LV ++       +  +  + +      K++
Sbjct: 240 AWLPYWLVRERIQAGALVALVPGQPRYPYDCHALWLQTPHLPLKVR 285


>gi|163742128|ref|ZP_02149516.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384458|gb|EDQ08839.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 292

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 124/287 (43%), Gaps = 6/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ +R F   A +GS +  A +L L+Q ++SRQ++ LE ++G+ LF R  RGL LT  G
Sbjct: 5   DWNHIRAFLATAETGSLSAGARKLGLTQPTLSRQVAALEADLGVLLFERLGRGLALTSAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L   +  +    E   +     +    G +RI  +  +   +L   L +     P + 
Sbjct: 65  HDLLNHSRTMGAAAEALSLAATGQAQAIEGTVRITASDVMSAYVLPPALHQLRRRAPRLT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I ++  N   D+    AD AIR  +P Q   LI R +   H H YAA  YL+    P S 
Sbjct: 125 IDVVAANDIRDLMRREADIAIRHVRPDQ-PELITRLVRESHAHFYAASSYLERRGRPQSP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++ +H+ + F DL                     +   ++  S L+  +    G GI  
Sbjct: 184 EDMSRHDFVGFADLERSIE-----FMAPLGIHLTAQNFRIKSTSGLASWELVKQGFGICP 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   +    P + R++  +   +F ++      L  + +++   + +
Sbjct: 239 MMTAVADPTPGIERLLPGLDPITFPIWLTTHRELHTSRRIRLVFDLL 285


>gi|90412559|ref|ZP_01220561.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
 gi|90326367|gb|EAS42779.1| putative transcriptional regulator, LysR family protein
           [Photobacterium profundum 3TCK]
          Length = 295

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 134/299 (44%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  V ++GSF  AA Q  +  S++SR+I  LET+ G KL  RHA+ ++LT+ 
Sbjct: 1   MKLDDLDLFLTVVKAGSFASAARQRAIPTSTLSRRIQQLETDTGRKLLVRHAKDMSLTKD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +  S V+  +      + +     SG + I   I   ++ +     EF  L+P +
Sbjct: 61  GQLLVQQFSTVFDDIHLRLESVDKEKEDFSGVIVINAPIIPLKHQIGPLALEFAKLHPKV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI+  L N++        D A+R      +S  + ++L          P YL +  +   
Sbjct: 121 QIRFQLGNQNNYHLRGDIDIALRFGHQ-PASDWVAKRLSHNPSVICTTPDYLNDKPDLTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +++L++     P   + + +       +     + +Q +   +I +  V G GIA
Sbjct: 180 PNQLVRYDLLS-----PSPQQRWVFNHISGESVKFIPNARIQSDELDTIHRAAVAGLGIA 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            LP++  K   +N  L+++  D       V   YP+    + + +A  +FIF   + ++
Sbjct: 235 RLPEWYTKKSFENGELIQLFPDWQMEGSDVALLYPQRKLLSERTQALIDFIFEHWKPFE 293


>gi|289673353|ref|ZP_06494243.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
          Length = 265

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 108/263 (41%), Gaps = 8/263 (3%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
            ++R ++ +E+  G +L +R  R L LT  G        ++    +   +       +P 
Sbjct: 1   MVTRYLAQMESWAGARLLHRTTRKLGLTAPGQVTLLRCQQLVELADAVPLAADTQVDEPR 60

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G LRIA +  L   +L   +  +L  YP     L++ N+ +D+  +  D AIR+   +  
Sbjct: 61  GMLRIACSQSLALAVLAPAVTAYLRRYPGTSADLLIGNEAVDLVSERIDLAIRITNQL-D 119

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
            ++I R L        A+P YL     P   QEL  HN +T+        E         
Sbjct: 120 PNVIARPLGQCDSVVCASPAYLAVHGTPSRPQELPAHNCLTYSYFGKSLWE----FTRQQ 175

Query: 213 RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTV 269
            P+  P    L  N  + +++  V G+GI+L P +       +  L+ +M +    +  +
Sbjct: 176 LPLSVPVGGNLSANDSVVLLEAAVAGAGISLQPVHSAAPLIASGKLIALMPEYQPRALGI 235

Query: 270 YFCYPEALKNTGKLKAFRNFIFL 292
           +  Y      +  L+ F +F+  
Sbjct: 236 HAIYTSRHHQSATLRTFLDFLTE 258


>gi|238762439|ref|ZP_04623410.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638]
 gi|238699424|gb|EEP92170.1| Transcriptional regulator [Yersinia kristensenii ATCC 33638]
          Length = 307

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 140/299 (46%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +   ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLKHARQILGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMIPGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRIGA-LRDSTIHARLLGASRVRILASPDYLQLHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I+EL  H+L+ F    P+ +  ++             I  L  +S  ++    + G G
Sbjct: 180 HTIEELANHSLLGFTQ--PEFLNQWSLPHLPGGRSSI--IPNLAASSGETLRLLALQGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  L D++ +++     LV +M D    ++  +   Y    +   ++  F +++  + +
Sbjct: 236 IVELSDFMTREDQLAGRLVEVMADQTLETWQPINAVYYRNTQLAARITCFLDYVSEQIK 294


>gi|221212620|ref|ZP_03585597.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221167719|gb|EEE00189.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 320

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 128/294 (43%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLT 60
             +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +    G TLT
Sbjct: 11  KLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEASLGTLLFDKSRAEGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVAHTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     + ++   AD A+ L +P +    +  KL    +  YA   YL      
Sbjct: 131 RVTVDLLPVPHFVSLTKREADLAVTLERP-ERGPYVCTKLCDYQLRLYATRDYLATHPPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +    E       V         + L+  S ++     + G G
Sbjct: 190 AGTDDLARHTFISYVDDLAFSSELLYLERAVPGA-----TAGLRTTSVIAQSFAALHGGG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+LP +I    P LV ++ D I  +   +    E L+   ++ A  +++   A
Sbjct: 245 LAILPCFIAAAQPALVPVLPDQIVVTRCFWLTCREDLRKLRRVTALWDYLRAAA 298


>gi|208780014|ref|ZP_03247357.1| transcriptional regulator, MarR family [Francisella novicida FTG]
 gi|208744018|gb|EDZ90319.1| transcriptional regulator, MarR family [Francisella novicida FTG]
          Length = 297

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +        FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT 
Sbjct: 6   NISISLFEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTH 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      + ++++  +   +    +PSG L+I+T+    QN+L   +KE+   +  
Sbjct: 66  EGMLLFNYCKTLQNEIDNIRDLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ ++ K  +   + AD  + +        ++ RK+ T      A+P Y+     P 
Sbjct: 126 VKIEVSIEEKMPNFKSNEADIILGVNW-TPPEDIVARKIATTRYVLCASPAYINKNGSPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L  HN I     +   +         ++   +   S +  ++   I    +   GI
Sbjct: 185 NISDLANHNYIPHKSRVTPLVN-----IKKNKLNPQTLPSNISADNIEFIKACVLNDFGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A   +YIVKD   N  L+ +++D       +Y  YP+      K+K F N + 
Sbjct: 240 AQFHEYIVKDEIRNGQLIELLKDDFLDEQDIYIYYPKNKFVQPKVKEFVNLVI 292


>gi|88859450|ref|ZP_01134090.1| Transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
 gi|88818467|gb|EAR28282.1| Transcriptional regulator, LysR family protein [Pseudoalteromonas
           tunicata D2]
          Length = 299

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 136/299 (45%), Gaps = 12/299 (4%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M F+   D +R F  VA+ GSF  A+  L +  S++SR+++ LE ++ I+L  R A  + 
Sbjct: 1   MKFNYSLDDMRCFCAVAQYGSFKQASAALEIPLSTLSRRVAKLEEDLAIRLLNRDAHRVQ 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT  G + ++ ++ ++ +LE   + LQ+   +  G +RI+  ++ G ++L  +   FL+ 
Sbjct: 61  LTHSGQRYYQRSASLFEELEDVAVCLQQDKTQAKGTIRISAPVNFGVHVLAQHFNAFLIE 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKNC 177
           YPDI + L L N++IDI  +  D A R+     +   I R L  I      + +  L + 
Sbjct: 121 YPDIHLDLRLSNQNIDIEEEAIDIAFRVGDH-NAVHWIGRHLTNIRFVICGSVNLDLSSL 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           + P  ++      ++       K     +      +P    R   L+V+    + +    
Sbjct: 180 KTPCDLEGFA--TVLCSPMSTWKLQHTTSGEMQTHKPNHNIR---LKVDDISLLTRAIQD 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI  +PDY  +   D+  L +++ +           Y +      +L+   +F+  +
Sbjct: 235 GLGIGFIPDYHAQPLIDSGELRQVLPEWSNQPRGCQMLYRDRDNMPFRLRLLIDFMLQR 293


>gi|113867880|ref|YP_726369.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526656|emb|CAJ93001.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 302

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 134/296 (45%), Gaps = 1/296 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD L+ F  V +SGS   AA  LH++ S++ R+++ LE  +G  LF RHA G  +T  G
Sbjct: 5   DWDDLKYFLAVGQSGSLAGAARALHVNHSTVLRRLARLEETLGTLLFERHATGYAMTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    + V  +++  Q +L     + SG LR+ TT  L   LL     EF  ++P IQ
Sbjct: 65  EALAHRLAGVGEQIDAAQRQLSGLDSQLSGPLRVTTTDTLLGGLLMPLFAEFRSMHPRIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +Q++++N  + +S   AD AIR         L+ R++  +    YAA  YL+    P   
Sbjct: 125 LQIVVNNSFLSLSRREADVAIRPANA-PPEYLVGRRIGRLQTAPYAARRYLQQLGLPTEA 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
                 +   +  ++P         A   R         +  +S +++      G G  +
Sbjct: 184 DHPRLADWSAYDWVVPDEALSHLAQARWIRDHVPEPRRAVSADSLVAMADAVRHGMGAGM 243

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           L   +   +P LVR+    +     ++      L+++ +++   +F++ + R  ++
Sbjct: 244 LLCLLAGADPELVRLAPVDVAMDTDLWVLTHPDLRHSARVRVLGDFLYERLRQGEW 299


>gi|188583535|ref|YP_001926980.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347033|gb|ACB82445.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 322

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 128/289 (44%), Gaps = 10/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VAR  SF+ AA  L +  SS+SR+I+  E+ VG++L  R  R L LT  G 
Sbjct: 7   LRDMALFVEVARRKSFSQAAAALGMPISSLSRRITMFESTVGLRLLDRTTRKLALTSYGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGNLKEFLLLYPDIQ 123
                 S +  + + T  ++   +  PSG L+IA   D      L G + EF  L+  I 
Sbjct: 67  AYLAQVSRLVDEAQRTFDDMMAVAKGPSGFLKIAAPPDFWVLRHLSGVITEFSALHEHIH 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + L    +D+  D  D A+ + +P ++S LI RK+  +    + AP YL     P++ 
Sbjct: 127 VHVDLKPAPVDLVSDNYDLAVAIEEPRETS-LIVRKVAEVENGIFGAPAYLAERGAPMTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L+ H +I                 TV   +G P    L  NS     ++ V G G+  
Sbjct: 186 FDLEAHQVIVPMQGTSATWTLTRGSETVATTVGGP----LSCNSLSLARRFAVAGQGLTR 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                V ++     L R++ D   P+  VYF     L    K ++F +F
Sbjct: 242 ANVINVDNDLTTGRLQRVLPDWSLPATPVYFVTTSRL-LPAKARSFIDF 289


>gi|110635646|ref|YP_675854.1| LysR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286630|gb|ABG64689.1| transcriptional regulator, LysR family [Chelativorans sp. BNC1]
          Length = 293

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 130/289 (44%), Gaps = 9/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD +RVF  VAR+G    AA +L L+ +++SR+++ LE   G KLF R   G  LT  
Sbjct: 1   MDWDDVRVFLAVARAGQILGAARRLGLNHATVSRRVAALEDAAGAKLFRRLTTGSELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +   +   + E+       SG +RI      G   L   L      +P +
Sbjct: 61  GERLLAAAERMEADMIAARAEIAGEGEDISGSVRIGAPDGFGVAFLAPRLWRLTERHPRL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   + + +S   AD AI + +P +   L+  KLV   +  +A+  Y      P +
Sbjct: 121 SIQLVPVPRSLSLSRREADIAITVDRPTE-GRLVASKLVDYSLGLFASKAYAAGHGLPQN 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL  H L+ +  DL+     D+         I E   +   V+S +  ++    G+GI
Sbjct: 180 AAELAHHRLVGYVPDLVFSPTLDYA------AEISEHWDAAFAVSSAMGQVEAVRAGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +L  +I +   +LV +         + +  + E+++ T +++A   FI
Sbjct: 234 GILHCFIARGMEDLVAV-PFAQPIRRSYWLVFHESMRMTRQIQAAAAFI 281


>gi|323494364|ref|ZP_08099476.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323311527|gb|EGA64679.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 293

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWIQSVQSYIRVVDEGSFNGAARKLNTTSSAISKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++       + ++   E +  S  P+G L+I  T+ +G   L   L +FL +YPD
Sbjct: 61  AGALFYQRAKVQLDEWQSIVDETRSVSQTPAGLLKIGATLAVGSKFLVQYLDDFLQMYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQL        +     D  I R  + + S S     L       YA+P Y++   EP
Sbjct: 121 IRIQLTTT-TPGQLPELSLDLFISREIEQLNSLSFKATALFEHRAGFYASPDYIEQHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  HN++ +G+   + +   N    +               +  ++      G G
Sbjct: 180 TIAKDLAHHNMLVWGERPQREITLTNGQKLLLN-------GNFATTNPEALYYAAKNGMG 232

Query: 241 IALLPDYIVKDNPNLV---RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + L  D ++K+   L    RI+ D+     TVY  YP+      + K F +++  + 
Sbjct: 233 VLLSNDVMIKEELRLGTLKRILPDITADEATVYAYYPKLDYQHTRTKLFLDYLKERL 289


>gi|254464566|ref|ZP_05077977.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206685474|gb|EDZ45956.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 292

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ +R F   A +GS + AA +L L+Q ++SRQ++ LE E+G+ LF R  R L LTE G
Sbjct: 5   DWNHIRAFLATAETGSLSAAARRLGLTQPTLSRQVAALEAELGVLLFERPGRALALTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L   + ++     +  +     +    G +RI  +  +  ++L   L +     P + 
Sbjct: 65  HELLIHSRKMGEAANSLTLAATGQAQSIEGTVRITASDVMSAHVLPPVLHQLRQRAPRLT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I ++  N   D+    AD AIR  +P +   LI R +     H YAAP YL+    P + 
Sbjct: 125 IDVVAANDIRDLMRREADIAIRHVRP-EQPELIARLVQEATAHFYAAPSYLERRGRPSAP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H+ + F D+                         ++  S L+  +    G G+  
Sbjct: 184 AGLADHDFVGFADVDRSIA-----FMAPLGIHLTADNFRIRSTSGLASWELVKQGFGVCP 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + D +    P + R++  +   +F V+      L  + +++   + +  
Sbjct: 239 MMDDVAAVTPGVERLLPGMEPLTFPVWLTTHRELHTSRRIRLVFDLLAE 287


>gi|113971059|ref|YP_734852.1| DNA-binding transcriptional activator GcvA [Shewanella sp. MR-4]
 gi|117921335|ref|YP_870527.1| DNA-binding transcriptional activator GcvA [Shewanella sp. ANA-3]
 gi|113885743|gb|ABI39795.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
 gi|117613667|gb|ABK49121.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 303

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 112/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L ++ +       L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFTQLADATDRLLARSA--IGSLTVSMSPSFAIQWLVPRLSKFSEKNPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI          L   KL    +    +P  L   +     +
Sbjct: 126 RIKAVDTEASSLTDDVDVAIYYGLG-NWPGLRADKLRNEVLIPVCSPMLLNGPKPLSKPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKYHTLLH----DMSRHDWQAWFRQCGIHDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV   ++V+      Y    +     GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWML 289


>gi|262276030|ref|ZP_06053839.1| D-serine dehydratase transcriptional activator [Grimontia hollisae
           CIP 101886]
 gi|262219838|gb|EEY71154.1| D-serine dehydratase transcriptional activator [Grimontia hollisae
           CIP 101886]
          Length = 301

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 127/290 (43%), Gaps = 6/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA + SFT AAE+LHL+QS++S +I  LE  + + LF R  R L+LT +G +L 
Sbjct: 14  LHCFSVVAETMSFTRAAEELHLTQSAVSHRIKKLEQRLDVTLFVRRPRQLSLTNEGEQLK 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V SE +  +    +EL  +  +P G   I+      Q  L   L  F   +PD+ + L 
Sbjct: 74  LVVSEQFSAISLKLLELNRA--RPVGDFIISAPPTFSQKWLVPRLSLFAESFPDLTLHLR 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             N  ID   +  DCAI      + + LI   L+   +    +P Y ++     + ++L 
Sbjct: 132 TRNDLIDFKAEAFDCAIYFGHG-RYNGLISHHLMDDAIVPVCSPSYAEHHALYNAPEKLA 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+              WL   +    E + +    +     +     G G+A+    
Sbjct: 191 QCQLLHDAAPWASASLSDEWLYWANANGLELKGTNHSFDRADLALDAATHGMGVAIGRMA 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +++   N  LV  ++  +   ++ Y  Y E  +   K+ AF+ ++  + 
Sbjct: 251 YIQEYLHNGKLVAPVDKPVKSPYSFYLVYREEHQGNAKILAFKEWLESQL 300


>gi|255597253|ref|XP_002536731.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
 gi|223518733|gb|EEF25651.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
          Length = 279

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 2/246 (0%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A  GS+T AA  L +S S++S+ I  LE   G++LF R  R LTLT +G 
Sbjct: 9   LTGLIAFARAASLGSYTAAARSLAVSPSAVSKSIQRLEQHFGLRLFSRTTRSLTLTPEGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L   T  +  + E  +  +  +  +PSG L++   + +G ++L   L  F   YP + I
Sbjct: 69  DLLERTQRLLREAENIEQGVAAARAEPSGMLKVTAPLPVGVHVLAPALPTFRRRYPKLTI 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L ++ +D+  +  D AIR+  P   + LI R+L    + A+A+P YL    +P    
Sbjct: 129 DVRLSDRYVDLIEEGVDAAIRVGNPG-DTRLIARQLAPHRICAFASPAYLAARGKPQHPS 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H+ + F          + +L         P+ + L ++   ++    V G+GI + 
Sbjct: 188 DLLNHDCVNFRYQATGQEAQWPFLVGGKLMEFSPQ-AGLILDVSDAVATALVAGAGIGIS 246

Query: 245 PDYIVK 250
             YI  
Sbjct: 247 ATYIAA 252


>gi|194292037|ref|YP_002007944.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225941|emb|CAQ71888.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 311

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 136/297 (45%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L  F  V  SGS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELLAFATVVDSGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E+ + ++     KPSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGQAFLQDARAIIDSVESAEEQMLARREKPSGRLRVDAASPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D A+R+ + ++ S+L  R +    +   A+P YL     P
Sbjct: 121 QVELELNSNEGIIDLLERRTDVAVRIGR-LKDSTLHSRLIGNSRVRMLASPAYLDAHGHP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              Q+L KH L+ F    P+ +  +  L     P        +  +S  ++ Q  + G+G
Sbjct: 180 RKAQDLGKHALLGFNQ--PESLNLWPILGPDGEPYRIE--PAVWSSSGETLRQLALEGAG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  L D++    ++   LV+++          ++  Y      + ++ +F +++   
Sbjct: 236 IVCLSDFMTAHDREAGRLVQVLARQTQDVRQPIHAVYYRNTAISARIASFVDYLVEA 292


>gi|317054107|ref|YP_004118132.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952102|gb|ADU71576.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 313

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 7/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F   A  GSF+ AA +  L    +S  +  LE E+  +LF R  R L LT +G 
Sbjct: 4   LEDVTLFVRSAALGSFSRAAREADLLPGQVSAAMQRLERELDKRLFARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           K      E+   ++     LQ      SG+L+IA   D+G+N+L   + +F   +P + +
Sbjct: 64  KYLPYAQEMLALMQAGADSLQSHEDALSGELKIALPSDIGRNILLPLITDFCRAHPSLSV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           +L L ++  D+  D  D AIR  K +  SS +   L         AAP +L     P  +
Sbjct: 124 RLSLSDQISDVFRDPVDIAIRYGK-LDDSSYVALPLAEDNRRVLVAAPAWLDQHGRPEKL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++  H+ + F  ++   + D                S L  +      ++ V G GIA 
Sbjct: 183 EDIAHHHCLLF--VMNGHVYDKWTFPQEGMRRQITVKSRLLCDDADIARRWAVAGMGIAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                V D+     L  ++      S  ++   P   + +  ++A    +    R
Sbjct: 241 KSWIDVCDDVQAGRLEVVLPQQPGESTPLHLICPHRKQFSPAIRALHQVLRSHLR 295


>gi|213158133|ref|YP_002320184.1| glycine cleavage system transcriptional activator [Acinetobacter
           baumannii AB0057]
 gi|301347640|ref|ZP_07228381.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB056]
 gi|301512775|ref|ZP_07238012.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB058]
 gi|301596255|ref|ZP_07241263.1| LysR family transcriptional regulator [Acinetobacter baumannii
           AB059]
 gi|213057293|gb|ACJ42195.1| glycine cleavage system transcriptional activator [Acinetobacter
           baumannii AB0057]
          Length = 308

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF   AR  SFT AA +L+++Q +ISRQI  LE  +G +LF R  R ++LT  G +
Sbjct: 10  NSLIVFEAAARHLSFTKAANELNVTQGAISRQIRQLEEYLGKELFLRANRNISLTPTGLQ 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++        L+  Q   +    +   ++ +ATT  +    L   +  F      + ++
Sbjct: 70  YYQTI--YSALLDVAQATAEIKKWQGEHQITVATTNAMAALWLLPKVAAFQQNNEGVDLR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  +   D+     D A+   + +  + +    L    +    +P+YL   +E  S +E
Sbjct: 128 ILTTDNISDLHKMDFDLALFYCR-VPPAGMRVTTLFPEEVFPVCSPNYLAQFKEDSSPEE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +    L+   D     +    W   V+ PI +P+ + + +N+Y  ++Q  + G G+AL  
Sbjct: 187 IFGKALLYLDDAQKDWITWSEWFEAVNYPIVKPK-NRVNINNYPMLLQAAINGQGVALAW 245

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKN-TGKLKAFRNFIFLKA 294
             +V D   +  LVR +E V+          P         +K FR+++  + 
Sbjct: 246 GSLVDDYLQSGALVRPVETVLRTQANFSMLEPADRGVIPSSVKHFRSWLLDQL 298


>gi|107028574|ref|YP_625669.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686576|ref|YP_839823.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|254250331|ref|ZP_04943650.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|105897738|gb|ABF80696.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652291|gb|ABK12930.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|124879465|gb|EAY66821.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 296

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 121/294 (41%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF RH R + LT  G 
Sbjct: 8   LNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGRPLFERHNRRVELTAAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++     +    + +    LR++         L   L  F + +P I++
Sbjct: 68  AYLAEVGASFDRIALATAQHFGHAQQR--VLRVSAPATFSLRWLVPKLSSFQVAHPAIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ ID   D  D  +R   P      +  + ++       AP  L+  R   +  
Sbjct: 126 RLSTSNEPIDKLRDKVDLIVR-GGPQAIDGYVAEEFLSEVRLPVCAPKLLEG-RSLDTPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WLA    P   PR S L +  +   +Q  + G G+A+ 
Sbjct: 184 DLAGFTLLHAATYPGMWPE---WLAAAGHPNLVPRHS-LTLEHFYLTLQGALDGLGVAMG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V D+     LV+   +   P +  +     A  +   ++AF++++    R
Sbjct: 240 PIALVADDIAEGRLVQPFSEPALPPWRYFTYVASARADDDAVRAFKDWLKATGR 293


>gi|332186054|ref|ZP_08387800.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
 gi|332013869|gb|EGI55928.1| bacterial regulatory helix-turn-helix , lysR family protein
           [Sphingomonas sp. S17]
          Length = 298

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 120/297 (40%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VA++  F  AA  +  S S++S  +  LE  +G++L +R  R +  T
Sbjct: 1   MKADLADLNAFLAVAQARGFRDAARTVGSSASTLSEAVRRLEARLGVRLLHRTTRSVVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    +    +++     +     +P+G L++   +   + +L   L  FL  YP
Sbjct: 61  EAGTRLIERLAPALGEVKAALDVVNLFRDRPAGTLKLNVPVSAARLVLPPILPGFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DIQ++++ ++  +D+     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 DIQVEIVAEDGFVDMVASGCDAGIRYDERLEQD-MIAVPIGPRVQRFATAAAPAYLDARG 179

Query: 179 EPLSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            P   ++L  H  +   F         +F     V R   +  +      +   ++   V
Sbjct: 180 RPDHPRDLLDHACLRGRFSSGALTSPWEFERDGEVIRIEPQGPLIAGVAGAVELLVDVAV 239

Query: 237 LGSGIALLP-DYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  L  D++     +  L  ++ D        +  Y         L+AF +FI
Sbjct: 240 AGGGIIYLFEDWLAPALGSGTLEAVLPDWWQSFSGPFLYYSGRRLVPPPLRAFLDFI 296


>gi|325528096|gb|EGD05303.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 319

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 130/294 (44%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +   G  TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++ + ++  +    SG +R+ +T   G   L   L  F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSARDQIANTGEALSGHVRVGSTEGFGCFFLAPQLARFRAAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     + ++   AD AI L +P +    +  KL    +  YA   YL N    
Sbjct: 131 QVTVDLLPVPHFVSLTKREADLAITLERP-ERGPYVCTKLCDYQLRLYATRDYLANHAPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +    E       V         + L+  S ++     + G G
Sbjct: 190 TCTDDLAQHAFISYVDDLAFSSELLYLERAVPGAS-----AGLRTTSVIAQYFAALQGGG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+LP ++    P LV ++   +  +   +    E L+   ++ A  +++   A
Sbjct: 245 LAILPCFMAARQPALVPVLPGEVAVTRCFWLTCREDLRKLRRVTALWDYLRAAA 298


>gi|315181784|gb|ADT88697.1| transcriptional regulators, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 310

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 138/301 (45%), Gaps = 17/301 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS    +L +F  V R GSFT AA    +  S++S+QI  LE  +G++L  R  R ++LT
Sbjct: 1   MSIS-HQLSLFVDVVRQGSFTKAALLHDMDNSALSKQIKKLEQSLGVQLLNRSTRTISLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G ++++    +   L   Q   +   + PSG ++IA     GQ  LQ  L  F+  YP
Sbjct: 60  PVGEQIYQQAQVLEDTLNNIQRIAETHQLTPSGSIKIAAPNYFGQRYLQPVLDAFIGKYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+++ LILD+K  DI  D  D AIR+ K +  S+LI +K+   +    A+  ++     P
Sbjct: 120 DVELTLILDDKRADIIADKFDVAIRIGK-LADSNLIAKKITNTNFVLIASNDFVAKHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-----SCLQVNSYLSIMQYC 235
            S + L     + + +         + L     P  +  +        +VN    +++  
Sbjct: 179 QSPEALIALPAVIYAN----GDVTLDKLTISCEPSSQEMLNLTMKGNFKVNDVKLVVESI 234

Query: 236 VLGSGIALLPDYIVKDNPN---LVRIMEDVITPSF--TVYFCYPEALKNTGKLKAFRNFI 290
             G G  L+  + ++++     LV+++ + +  +    +Y  YP   + +  +  F + +
Sbjct: 235 KKGVGYGLIDMFGLEESLEEAGLVQLLPNYVISTMSTGIYAIYP-NRQRSLLVDDFVSLL 293

Query: 291 F 291
            
Sbjct: 294 L 294


>gi|295675331|ref|YP_003603855.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
 gi|295435174|gb|ADG14344.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 327

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 122/297 (41%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SF+ AA++L ++  ++S QI  LE E+G+ LF R  + + LTE G 
Sbjct: 9   LNAIKAFEAAARHESFSRAADELFVTHGAVSHQIRALEAELGVSLFARDGKRVRLTETGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +          +L      ++    +   +L I+         +   +  F+  +P   +
Sbjct: 69  RYATQVRAALMELADATRAIRAGDRER--RLVISMLSSFAARWVTPRIGSFIEAHPQWDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N   D + D  D AIR     +   L    L+        +P++    + P +  
Sbjct: 127 ELLTTNALTDFARDDVDVAIRFGFG-KYPGLHAELLLDEIFFPACSPNF-NGGKLPQTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L K  L+   D + +   D   L        EP+   L  +S   ++Q  V G G+AL 
Sbjct: 185 DLAKVPLLRSDDELWRPWFDAAGLTDW----PEPKRGVLYQDSSN-LLQAAVDGQGVALT 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +         LVR+ +      +  Y         T ++KAFR+++F +   ++
Sbjct: 240 RRSLAMHEIAAGRLVRLFDVDGPSPWQYYLVCLPQTLETARVKAFRDWVFDEVARFR 296


>gi|154244922|ref|YP_001415880.1| LysR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159007|gb|ABS66223.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus
           Py2]
          Length = 299

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 141/300 (47%), Gaps = 13/300 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +LR+F  VAR GSF  AA  L +  S++SR ++ LE E+  +L +R  R ++LTE 
Sbjct: 1   MDTAQLRIFVHVARRGSFAAAARDLDMDASAVSRAVAALEAELDARLMHRTTRAMSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +  +L+  + E+  +  +P G LR+  ++  G+  L   L E    +P +
Sbjct: 61  GQAYLARVEPILDELDRARDEVASARAEPVGTLRLTASVAFGEACLMPLLAEMRTRFPRL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ LIL + ++D++ +  D A+RL   +++  +I  +L        A+P Y      P +
Sbjct: 121 KLDLILTDTNLDLATERIDMALRLAPDVRAD-VIGIRLFATRYRVVASPDYCAREGAPRT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGI 241
            QE+ KH  I FG    +      W+   D  + E  +   + ++S L+I +    G G+
Sbjct: 180 PQEVGKHCAIVFGLPDFR----LRWMFRRDGQVEEVAVRGDIAISSGLAIRRAARDGLGL 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLPD++V  +     L+ +  D    + +     +  Y        K++    F+  + 
Sbjct: 236 ALLPDWLVGPDLATGTLIDLFPDYDITATSFDTAAWLIYASRRYTPKKVRLMTKFLRERL 295


>gi|218461976|ref|ZP_03502067.1| LysR family transcriptional regulator [Rhizobium etli Kim 5]
          Length = 308

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 124/297 (41%), Gaps = 19/297 (6%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  VA +GSF+ AA  L ++Q ++SRQ++ LE+    +L +R   GL+LT 
Sbjct: 1   MDIVSALRTFQRVAETGSFSAAAHDLDVTQPAVSRQVASLESHFNTRLLHRTTSGLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G ++  +   +   +E        +    SGK+R++    LG   L   L + L  +P 
Sbjct: 61  EGERMLPMALRILEAVEELGDAAGSNGATASGKVRLSVPAPLGLY-LSERLGDLLAGHPK 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++LI   +  D+  +  D  +RL   +  SSL+ R++        A+P YL     P 
Sbjct: 120 LSVELIFREQSSDMIEERLDLEVRLGS-VADSSLVCRRIGWTTAFLVASPAYLARKAAPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-------- 233
           + +++  H  + +      C   F+        I       L   + ++I +        
Sbjct: 179 APKDIRDHECLCYDRAGDTCTWSFS---NGSEDISVRITPRLTACNAIAIHRAALAGAGL 235

Query: 234 YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +    I  +PD        L+ +MED       +   YP       +++   +F+
Sbjct: 236 AVLSH--IIAVPDIAA---GRLIPVMEDFQPSRLPITVVYPSRRNMPLRVRTVLDFL 287


>gi|319784120|ref|YP_004143596.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170008|gb|ADV13546.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 299

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 115/298 (38%), Gaps = 15/298 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  F  VAR+G F   A     S S +S  +  LE ++G++LF R  R +  TE 
Sbjct: 2   MDLSDLNAFVAVARAGGFRDGARASGGSASGLSEAVRRLEVQLGVRLFNRTTRSVVPTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L         ++E     +     +P+G LR+   +   + +L   +  FL  YP I
Sbjct: 62  GLSLLERLGPALSEVEAALDVVNGFRDRPAGSLRLNVPVSAARLILPDIVPGFLAAYPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCREP 180
           ++++I D   +D+     D  IR  + ++   +I   +          A+P YL     P
Sbjct: 122 RLEVIADENFVDVLAAGCDAGIRYDERLEQD-MIAVPIGPRVQRFATAASPAYLDRHGRP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLG 238
               +L  H+ +  G      M  + +    +    +P    +     +    +   + G
Sbjct: 181 QHPSDLLGHSCVR-GRFASGAMLPWEFERDGEVVRVDPTGPLIVRIGGATDLAVDAAIAG 239

Query: 239 SGIA------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +GI       L P +   D+  L  ++E         +  YP        L+AF ++I
Sbjct: 240 TGIIGLFEGWLRPYF---DSGALEPVLEPWWQSFPGPFLYYPGRRLVPAPLRAFIDYI 294


>gi|119474998|ref|ZP_01615351.1| putative transcriptional regulatory protein (LysR family) [marine
           gamma proteobacterium HTCC2143]
 gi|119451201|gb|EAW32434.1| putative transcriptional regulatory protein (LysR family) [marine
           gamma proteobacterium HTCC2143]
          Length = 302

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 129/304 (42%), Gaps = 15/304 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  VA +GSFT AA    +  SSISR+I+ LE  +G  L  R  R + LTE
Sbjct: 1   MDQLRALRYFSKVAETGSFTIAANTFSVPASSISRRIADLEKNLGATLLKRSTRSVHLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  +LE +   ++    KP G+L I+T +  G+ L+   L EF LL+P 
Sbjct: 61  IGQQYFAQVKSILTQLEQSDETVRSYQAKPEGRLHISTLVGFGERLVLPLLDEFKLLHPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + L ++   +  D  D AIR      +  +   +L+       A+  YL     P 
Sbjct: 121 IVLDVSLSDELQSLERDEVDIAIR-GGYAPNERVQAIRLMDNEFIPVASRRYLDRRGTPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           +  EL +H+ + +            WL   D    +   + + + N+   + +  + G G
Sbjct: 180 NAFELRQHDGLFYRTPHGPT----TWLCNTDGQWHDVSGTAVAISNNGKWLGEQTIAGLG 235

Query: 241 IALLPDYIVKDN---PNLVRI-----MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I + P + + ++     L  +     +     P+  +Y  Y +      K+ A   F+  
Sbjct: 236 IMMAPRWSINEHIKSGELQELTFNPALSVSQNPNLAIYLLYQKQRYLVPKVMAAVEFLVA 295

Query: 293 KARD 296
           + + 
Sbjct: 296 RLKQ 299


>gi|320331334|gb|EFW87277.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881844|gb|EGH15993.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 316

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 113/295 (38%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LTE
Sbjct: 7   DMSLDLLRAFEVAARLRSFTAAAIELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  + PD
Sbjct: 67  AGKILFSHVQAGLQSIDSGLIAITEQHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  +   + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESHWLFSEEVFPVCSPQLITGRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNEALRDFPLLHLRGESSNNWFDWAGVFRALDIPQAPTPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWKHLVDDLLDQGLLCRPIAGAAISGQGYYVVLPQRKRRVQIVQQFMDWLASE 298


>gi|190892500|ref|YP_001979042.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697779|gb|ACE91864.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 308

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 11/294 (3%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  V  +GSF+ AA  L ++Q ++SRQ++ LE     +L +R   GL+LT 
Sbjct: 1   MDIVSALRTFQRVVETGSFSAAAHDLDVTQPAVSRQVAALEGHFNTRLLHRTTSGLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G ++  +   +   +E             SGK+R++    LG   L   L + L  +P 
Sbjct: 61  EGERMLPMALRIIEAVEELGDAAGSEGAMASGKVRLSVPAPLGLY-LSERLGDLLAAHPK 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+   +  D+  +  D  +RL  P+  SSL+ R++        A+P YL     P 
Sbjct: 120 LSVELLFREESSDMIEERLDLEVRLG-PVADSSLVCRRIGWTTAFLVASPAYLARKAAPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           + +++  H  + +     +  E  +W  +        RIS  L   + ++I +  + G+G
Sbjct: 179 TPRDIKDHECLWYT----RAGEANSWSFSNGSEDISVRISPRLTACNAVAIHRAALAGAG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +A+L   I   +     LV +M+D       V   YP       ++K   +F+ 
Sbjct: 235 LAVLSHIIATPDIAAGRLVPVMKDFQPSRLPVTVVYPSRRNMPLRVKTVLDFLI 288


>gi|170701479|ref|ZP_02892433.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170133603|gb|EDT01977.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 299

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 129/293 (44%), Gaps = 14/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F  AA++L ++Q ++++Q+  LE  V ++LF R  RGL LT +G 
Sbjct: 13  LNALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDVVEVQLFRRLPRGLALTREGL 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           +      L +        L ++TT       L   L +F  L+PDI++
Sbjct: 73  EYFSSVQRALQIISDATDALGQRPT----VLAVSTTPSFASKWLIPRLADFGRLHPDIEV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D +      D  D AIRL KP   + L    L  + + A A+P  L       +  
Sbjct: 129 RVIADERLASFRADGVDIAIRLSKPPFPAGLAAELLAPLDIFAVASPKLLDGGPPIRTPA 188

Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H L+    DL P+ +E        D   G       + +  L  +   V G GIAL
Sbjct: 189 DLSMHALLHDAHDLWPEFIEKLGGKGQADPTKGP------RFSQSLLAIDAAVAGQGIAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + +V+ +     L R+ +     S   Y  +P+A  ++  L+A R ++F +
Sbjct: 243 TSEPLVERDIAEGRLRRVFDFSFPMSLGFYVVFPQAHAHSEALQAMRRWLFAQ 295


>gi|157374723|ref|YP_001473323.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157317097|gb|ABV36195.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 295

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 130/301 (43%), Gaps = 21/301 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   +R  SFT A  +L ++  +IS+QI GLE  +G+ LF R  R L LT++G 
Sbjct: 8   LNSLLAFESASRHLSFTKAGSELFVTHGAISKQIRGLEEYLGVPLFLRQHRKLVLTDEGL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           +     E++ S    +  L I     L  N L   ++EF   YP + +
Sbjct: 68  RYLPQIQAALQTISHATDEIK-SQQMLTQSLSINVLPSLTINWLIPRMEEFKQRYPHLYV 126

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L + +  +D      D AIR   K  Q+ + I  KL+   +    +P      +   ++
Sbjct: 127 DLSIGDFALDFDKSPCDIAIRSGTKAPQNCNFI--KLMDEDLCLVCSPQIATRLK---TL 181

Query: 184 QELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++  L+   T  +L P   E      T D+  G        +  +  + Q  V G G
Sbjct: 182 DDINRMTLLKHTTRPELWPYWAERVGLSLTTDKKFG--------MEHFYMLSQAAVSGMG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +AL+P + +++   + +LV   +   T  +T Y   P++     K KAF +++      +
Sbjct: 234 VALIPRFFIEEQLTDGSLVIPFDSSFTSPYTYYLLTPKSKNLPLKAKAFIDWLLEIFAPY 293

Query: 298 K 298
           +
Sbjct: 294 R 294


>gi|330976057|gb|EGH76123.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 294

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  G 
Sbjct: 4   IEDLRLAVTLSRCESLSAAARILNVSPPALSMRLRKLETQLGITLASRDARRLSLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R ++++  +LE      ++   +  G LR+A     G+  +   L  F  L+P + +
Sbjct: 64  RFARESAQLLEQLEALPESFRQRDERLVGTLRLAAPFGYGRQRIAPLLARFARLHPQLCL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L           +D  I +   +  S  I R L   H    A+P Y++    P +  
Sbjct: 124 QLDLRETPW-PDRHDSDAVIHIGS-LNDSQWIARPLAQNHRWLCASPAYIEQHGVPSTPD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I   +          W  +  +     RI   L  N      ++   G GI L
Sbjct: 182 QLAGHRCICIRENDEDVTL---WHLSKGQTKKTLRIEPALLSNDGSVARRWAEQGLGIVL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D   +  LVR++ D    S  +    P     + +++A   F+
Sbjct: 239 RSQWDVSDAIASGRLVRVLADWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|241661698|ref|YP_002980058.1| LysR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240863725|gb|ACS61386.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D]
          Length = 304

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 128/298 (42%), Gaps = 6/298 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +  +   +GS + AA  L+++ ++ S  +  LE E+G++L  R  R L LT +G 
Sbjct: 4   FDDLTILVLAVDNGSLSAAARVLNIAPAAASAAVKRLEAELGVRLLARSTRSLALTHEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L+  Q  L        G + ++   DLG+N+L G L +FL  +P + +
Sbjct: 64  RYLQHARRALADLQAGQDALALGRQAIGGDVSLSIPSDLGRNVLIGWLDDFLAEHPAVAL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           Q+ + ++ +D+     D A+R  +P + SSL+   L         AAP Y      P + 
Sbjct: 124 QVRIGDRLVDMFRQRVDAAVRYGEP-EDSSLVALPLAPDNRRVLCAAPAYFARHGVPKTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
            +L +HN +          +     A+ D      R++  ++ +    + ++ V G GIA
Sbjct: 183 DDLRQHNCLMLALSDTTHDQWTFHGASDDGQAHVVRVTGNRIADDGELVRRWAVAGHGIA 242

Query: 243 LLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 V  +    R+   + D    +  ++      L  +  L   R+F+  +   +
Sbjct: 243 YKSRLDVLADLRAGRLQAALTDWRGEAAPLHLICTHRLALSPTLMRLRDFLQERIAGY 300


>gi|114769233|ref|ZP_01446859.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
 gi|114550150|gb|EAU53031.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium HTCC2255]
          Length = 310

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 6/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FDW+K R F V A  GS + AA  L ++Q ++ RQ+ GLE E+GI LF R  RGL LT 
Sbjct: 21  KFDWNKARAFLVTAEEGSLSAAARALGMAQPTLGRQVDGLEQELGIVLFERVGRGLQLTP 80

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      + +      +     S    G++ I+ +      LL   + +  +L PD
Sbjct: 81  GGLELLDHVRVMGNAAGRVSMNALGQSQTLEGRVCISASETYAAMLLPPIIAKLRILEPD 140

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++++ N+  D+    AD AIR  +P +   LI +K+       YA P Y++    P 
Sbjct: 141 IHVEIVVSNQASDLRRREADIAIRNFRPTE-PDLIAKKVGEADAVLYATPDYIEKIGNPT 199

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L   + +               L  +   + E     L   SYL + +    G  I
Sbjct: 200 MPQDLRHAHFVNLD----HAGMMIKALNKLGLGLTEENFPLL-TESYLVMWELVRQGVAI 254

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +L  +I   +P + R++ +     F ++      L  + +++   +++  + 
Sbjct: 255 GILDAHIGDADPIVRRVLPNFQPLIFPIWLVSHRELTTSRRIRRVYDYLAEEL 307


>gi|254225328|ref|ZP_04918940.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
 gi|125622169|gb|EAZ50491.1| transcriptional regulator, LysR family [Vibrio cholerae V51]
          Length = 316

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 135/298 (45%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S   D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R+++ L LT
Sbjct: 10  LSMKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L    +E++ ++E  Q E++++     G++ I+  +   ++ L     EF  L+P
Sbjct: 70  KEGEQLFHSYAELFAQIERKQEEVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--- 177
           ++ +++ + +     S    D A+R   P   S  + RKL        A+          
Sbjct: 130 NVTLRMQVGSGLDYFSQRDLDIALRFG-PQPESDWVARKLARNPSVLCASAELAAKLSTV 188

Query: 178 -REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                  ++L +H L++    +P           V + +     + L  +   +I+Q  +
Sbjct: 189 TPALAHPEQLKEHPLLSLNHKLPWIFHHHR----VAQKVQFIPTARLCSDELDTIVQATL 244

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G GIA LP  +++    +  L+ ++ +       VY  +P+      + +A  ++I 
Sbjct: 245 QGMGIARLPRGLMEPLLRSGQLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDYIM 302


>gi|291615863|ref|YP_003518605.1| PtxR [Pantoea ananatis LMG 20103]
 gi|291150893|gb|ADD75477.1| PtxR [Pantoea ananatis LMG 20103]
          Length = 289

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 70/272 (25%), Positives = 121/272 (44%), Gaps = 7/272 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + +F  V    SFT AA  L +S+S ISR+I+GLE  +GI+L  R  R +TLTE G   +
Sbjct: 1   MMLFARVVELKSFTEAARVLGVSKSHISREIAGLEQRLGIRLLQRTTRRMTLTELGQAYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +  +Q++   P+G +R+   +  G   +   L  FL  +  I + L 
Sbjct: 61  PFCVRMLDEMHRAEDFVQQAHQNPAGNVRLQAPVTYGCQCIVPLLNRFLRGHLHINVDLS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L + + +   D  D AI +R          R L  IH   YAAP YL         + L 
Sbjct: 121 LTDNNDETLGDGVDIAIVIRAHAPRQGNF-RVLSDIHWGLYAAPDYLAQHPAISHPRLLP 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H+L+ F          F         +     S  + N+ +++++  + G+GIA LP Y
Sbjct: 180 RHDLLMFHGPAHTAALPFR---RDKLRLAVDVRSRFRANNSMALLKAALAGNGIAYLPSY 236

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEA 276
           +V++      +V+++ +        Y    + 
Sbjct: 237 MVQEALTQGQIVQVLPEWQMDRSQSYLLRHQD 268


>gi|118496716|ref|YP_897766.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. novicida U112]
 gi|194324023|ref|ZP_03057798.1| transcriptional regulator, MarR family [Francisella tularensis
           subsp. novicida FTE]
 gi|118422622|gb|ABK89012.1| transcriptional regulator, LysR family [Francisella novicida U112]
 gi|194321920|gb|EDX19403.1| transcriptional regulator, MarR family [Francisella tularensis
           subsp. novicida FTE]
          Length = 298

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +        FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT 
Sbjct: 6   NISISLFEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTH 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      + ++++  +   +    +PSG L+I+T+    QN+L   +KE+   +  
Sbjct: 66  EGMLLFNYCKTLQNEIDNIRDLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ ++ K  +   + AD  + +        ++ RK+ T      A+P Y+     P 
Sbjct: 126 VKIEVSIEEKMPNFKSNEADIILGVNW-TPPEDIVARKIATTRYVLCASPAYINKNGSPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L  HN I     +   +         ++   +   S +  N+   I    +   GI
Sbjct: 185 NISDLANHNYIPHKSRVTPLVN-----IKKNKLNPQTLPSNISANNIEFIKACVLNDFGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A   +YIVKD   N  L+ +++D       +Y  YP+      K+K F N + 
Sbjct: 240 AQFHEYIVKDEIRNGQLIELLKDDFFDQQDIYIYYPKNKFVQPKVKEFVNLVI 292


>gi|113868439|ref|YP_726928.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113527215|emb|CAJ93560.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 310

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 121/303 (39%), Gaps = 20/303 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   A +GSF+ A  +L L+ +++SR ++ LE  +G++LF R  R LTLTE G
Sbjct: 3   TLANLESFVRSAETGSFSAAGRRLALTPAAVSRNVAMLERNLGVRLFQRSTRKLTLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +           L+     +     +P+G L+++     G   +   L +FL  YP I+
Sbjct: 63  ERFLASIGGNLDALQAAIAAMSNDHGEPAGVLKVSLAPSFGVAYVMPLLPDFLQRYPAIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            +   +N+ ID+  +  D AI     + +  L+ R L   H+ A A+P YL+    P   
Sbjct: 123 PEWHFENRAIDLIAEGFDAAIGGGFEL-APGLVSRPLAPAHIVAVASPAYLRERTLPADP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV------- 236
             L+  + I            +         +       + V+   ++ +  +       
Sbjct: 182 AMLNVMDGIVMRSGRTGRTRHWTMRDAAGNEVATTMRERIVVSDPAAMREAALLGLGVAL 241

Query: 237 ----LGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                     +LP +I  +   LVR++      +  +   YP      GK +AF + +  
Sbjct: 242 LAVPD-----VLP-WI--ERGELVRVLPRWYADAGAISLYYPTRTLMPGKTRAFIDHVVE 293

Query: 293 KAR 295
             R
Sbjct: 294 AFR 296


>gi|294651858|ref|ZP_06729149.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822247|gb|EFF81159.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 311

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 131/299 (43%), Gaps = 6/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D    FY+V + G F+ A+E  H+S+S +SR+I  LE +  + L  R  R   +T
Sbjct: 1   MINSFDDFHYFYLVVKHGGFSAASEAEHISKSKLSRRIIELENKFNVSLIQRTTRHFKVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +    +V  ++E  +  L +   +P G ++I+    +    ++  L EFL  YP
Sbjct: 61  ELGQEFYEECCKVIAQVECAENVLLKQKSEPQGLVKISCPPLMMHFQIRKLLNEFLKAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            ++I L L ++ +D+  D  D AIR   +P + SSLI R ++       AAP  L+  + 
Sbjct: 121 KVEIALELTSRRVDLMHDDIDIAIRTSFEPNEDSSLIVRDVIQTEHCLVAAPELLQG-QH 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                EL  +  +  G    +       ++  D+ +  P    ++ N    +      G 
Sbjct: 180 IHHYSELSHYPSVALGIQKSQYFWHLCHVSD-DKSVDVPYTPRVRSNDLAGVYYAVSDGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA LP   V+ +     L+ I+ +  +   TV   Y         ++   + +    R
Sbjct: 239 GIADLPYLTVQADIEKGKLIHILPEWKSNRGTVQLVYASRKGQRLVVEKLIDTLIENLR 297


>gi|315499060|ref|YP_004087864.1| transcriptional regulator, lysr family [Asticcacaulis excentricus
           CB 48]
 gi|315417072|gb|ADU13713.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 298

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 12/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   AR GS T AA +L+L+QS++SRQI+ LE ++ ++LF+R  + + LT  G
Sbjct: 10  SLSLLAAFEATARLGSVTAAARELNLTQSAVSRQIAALEAQLEVELFHRERQTVRLTAGG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R   E    + +  + L+       G L++A     G   L   L +FL     IQ
Sbjct: 70  EAYAREVREALKIISSASLSLRA--NPHGGTLKLAILPTFGTRWLAPRLPDFLRNNSGIQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + LI      D   +  D AI   +P    +     L    +    AP            
Sbjct: 128 VNLITRIGVFDFRSEGLDAAIHFGRPGWPGAESA-LLRPEVVIPACAPELKAQYG-FAEP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +  L+    L  +     NWL     P     +  +  + + ++ Q    G G+AL
Sbjct: 186 ADLRQAPLLH---LTSRPDAWENWLEAHSAP--SDHVHGMLFDQFATLAQVARSGLGVAL 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           LP ++ ++   + +LV  +E  ++     +  +P    N   LKAFR+++  +   ++
Sbjct: 241 LPQFLAEEEFASGSLVPALEAPLSTGEAYHLVWPAERSNHPPLKAFRDWLLKETATYR 298


>gi|189352738|ref|YP_001948365.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189336760|dbj|BAG45829.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 320

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLT 60
             +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +    G TLT
Sbjct: 11  KLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEASLGTLLFDKSRAEGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVAHTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     + ++   AD A+ L +P +    +  KL    +  YA   YL +    
Sbjct: 131 RVTVDLLPVPHFVSLTKREADLAVTLERP-ERGPYVCTKLCDYQLRLYATRDYLASHPPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +    E       V         + L+  S ++     + G G
Sbjct: 190 AGTDDLARHTFISYVDDLAFSSELLYLERAVPGA-----TAGLRTTSVIAQSFAALHGGG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+LP +I    P LV ++ D +  +   +    E L+   ++ A  +++   A
Sbjct: 245 LAILPCFIAAAQPALVPVLPDQVVVTRCFWLTCREDLRKLRRVTALWDYLRAAA 298


>gi|16263398|ref|NP_436191.1| LysR family transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|307308337|ref|ZP_07588042.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307320896|ref|ZP_07600305.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|14524086|gb|AAK65603.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti
           1021]
 gi|306893494|gb|EFN24271.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306901138|gb|EFN31745.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 314

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 121/296 (40%), Gaps = 9/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   +  F  VA + S + A+    L +S++S +I  LE + G++LF R    L LT+ 
Sbjct: 1   MDLSVIDCFVKVADARSISAASRLHRLPKSTLSHRIRQLEDQFGVELFVREGHQLHLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+L R   ++    +     + E   + +G LR+ +T + G  +    L  F   YP +
Sbjct: 61  GSELLRHARKIRASCDDAVTAMAEMHKEVAGTLRVGSTGEFGTTVTSELLYAFQKTYPQV 120

Query: 123 QIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + ++  +      D+S    D      +P      + R+L T     YA+P YL    +
Sbjct: 121 ILDVVFLSARQPFTDVSDMALDGIFHWGEP-SDVDYVSRRLATASYGLYASPDYLAQHDQ 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  EL  H  + F       ++ +               + L  N Y ++  + V G 
Sbjct: 180 PANEDELALHRGLIFRSTTR--LQPWYLSRPGGSETEILLTAALTANDYWTLKYFAVAGQ 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA LP + V+    +  LV ++ +  +    +   Y      + + KAF  F   
Sbjct: 238 GIAYLPGFFVETECQSGLLVPVLSEWRSRETAINLIYSRRRHVSRRFKAFVRFCME 293


>gi|293396130|ref|ZP_06640410.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291421263|gb|EFE94512.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 289

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  SG+F+ AA++L +S   + + I+ LET +  +L  R+ R   LTE G   +
Sbjct: 1   MEVFIAVVESGNFSEAAKRLDISSVMVGKMIAQLETLLDTRLLQRNTRRQHLTEAGKTWY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           + +  V   L + +  ++     P+G LRI+    LG  ++     EF L YP++ I+L 
Sbjct: 61  QDSLGVMAALRSAEGRIESLRQFPAGSLRISAPTTLGSCVVASLCSEFQLRYPEVYIELE 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D   +  D AIR+ +    S  + ++L    M   A+  YL +   P S+ +L 
Sbjct: 121 LSDRFVDPIAEGFDFAIRVGQLPDDSPFVAQRLGDYKMVIAASADYLSSHPAPQSMADLP 180

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  +       +       L         P  +    N   ++ +  + G+G+ L P  
Sbjct: 181 AHRCLRNTLWNKRNAWRSGSLPLW------PENTVFSCNDGHALRRAALAGAGLILQPQL 234

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++ D+     L+ ++E  +     ++  + + ++ + K ++F +++  +A
Sbjct: 235 LLADDIRQGRLISLLEHALPAPRPIHLLWRQDVRASAKHRSFIDWMREQA 284


>gi|22127384|ref|NP_670807.1| LysR-family regulatory protein [Yersinia pestis KIM 10]
 gi|45442747|ref|NP_994286.1| LysR family regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108809113|ref|YP_653029.1| LysR family regulatory protein [Yersinia pestis Antiqua]
 gi|108810692|ref|YP_646459.1| LysR family regulatory protein [Yersinia pestis Nepal516]
 gi|145597761|ref|YP_001161837.1| LysR family regulatory protein [Yersinia pestis Pestoides F]
 gi|150260299|ref|ZP_01917027.1| LysR-family regulatory protein [Yersinia pestis CA88-4125]
 gi|162419634|ref|YP_001604895.1| LysR family substrate-binding transcriptional regulator [Yersinia
           pestis Angola]
 gi|165924994|ref|ZP_02220826.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165939867|ref|ZP_02228406.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166008711|ref|ZP_02229609.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212109|ref|ZP_02238144.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167399656|ref|ZP_02305180.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167418985|ref|ZP_02310738.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167425213|ref|ZP_02316966.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167469333|ref|ZP_02334037.1| substrate-binding transcriptional regulator, LysR family protein
           [Yersinia pestis FV-1]
 gi|218927862|ref|YP_002345737.1| LysR family regulatory protein [Yersinia pestis CO92]
 gi|229837351|ref|ZP_04457514.1| LysR-family regulatory protein [Yersinia pestis Pestoides A]
 gi|229840563|ref|ZP_04460722.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842889|ref|ZP_04463041.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900890|ref|ZP_04516014.1| LysR-family regulatory protein [Yersinia pestis Nepal516]
 gi|270487738|ref|ZP_06204812.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294502736|ref|YP_003566798.1| LysR-family regulatory protein [Yersinia pestis Z176003]
 gi|21960471|gb|AAM87058.1|AE013954_2 putative transcriptional regulator LYSR-type [Yersinia pestis KIM
           10]
 gi|45437613|gb|AAS63163.1| LysR-family regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108774340|gb|ABG16859.1| LysR-family regulatory protein [Yersinia pestis Nepal516]
 gi|108781026|gb|ABG15084.1| LysR-family regulatory protein [Yersinia pestis Antiqua]
 gi|115346473|emb|CAL19346.1| LysR-family regulatory protein [Yersinia pestis CO92]
 gi|145209457|gb|ABP38864.1| LysR-family regulatory protein [Yersinia pestis Pestoides F]
 gi|149289707|gb|EDM39784.1| LysR-family regulatory protein [Yersinia pestis CA88-4125]
 gi|162352449|gb|ABX86397.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis Angola]
 gi|165912178|gb|EDR30816.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165923194|gb|EDR40345.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165992050|gb|EDR44351.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166206855|gb|EDR51335.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166962979|gb|EDR59000.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167052160|gb|EDR63568.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167055976|gb|EDR65757.1| substrate-binding transcriptional regulator, LysR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229682229|gb|EEO78321.1| LysR-family regulatory protein [Yersinia pestis Nepal516]
 gi|229690156|gb|EEO82213.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696929|gb|EEO86976.1| LysR-family regulatory protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705474|gb|EEO91484.1| LysR-family regulatory protein [Yersinia pestis Pestoides A]
 gi|262360768|gb|ACY57489.1| LysR-family regulatory protein [Yersinia pestis D106004]
 gi|262364713|gb|ACY61270.1| LysR-family regulatory protein [Yersinia pestis D182038]
 gi|270336242|gb|EFA47019.1| LysR substrate binding domain protein [Yersinia pestis KIM D27]
 gi|294353195|gb|ADE63536.1| LysR-family regulatory protein [Yersinia pestis Z176003]
 gi|320016768|gb|ADW00340.1| LysR-family regulatory protein [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 303

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 141/299 (47%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGALFLSHARQIIGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P+YL+    P
Sbjct: 121 QITLELNTDDLNIDLLEQRTDIAIRIGA-LRDSTIHARLLGASRVRLLASPNYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I+ L  H+L+ F    P+ +  ++             I  L  +S  ++    + G G
Sbjct: 180 HIIEALADHSLLGFTQ--PEFLNQWSLPHLPGGRSSI--IPNLAASSGETLRLLALQGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L D++ +++     LV ++ D I  ++  +   Y    +   ++  F +++  + +
Sbjct: 236 IAELSDFMTREDQLAGRLVEVLADQILETWQPINAVYYRNTQLAARITCFLDYVSEQIK 294


>gi|240137830|ref|YP_002962302.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens AM1]
 gi|240007799|gb|ACS39025.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens AM1]
          Length = 304

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 109/300 (36%), Gaps = 10/300 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F  +AR  SF  A  +L +S S++S  +  +E  +G++L  R +R +
Sbjct: 1   MRINRTELADLGTFLAIARHRSFRRAGLELGVSASALSHALKAMEARLGVRLINRTSRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQI--ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
           TLT  G  L       +  + +     +        +G++R+         LL   L  F
Sbjct: 61  TLTAAGEDLLASLDAPFAAIGSALDVLDQHRDPTAATGRIRLNVLEHASTLLLAPVLPLF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              +P ++I + + N  +D+    AD  IR    +    + QR    +      AP YL 
Sbjct: 121 HARHPQVEIDVRVSNDLLDVVDAGADAGIRYGGTVPQDMVAQRLSADLRWVVVGAPTYLD 180

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P   ++L  H  +       +           D  I       + +++    +   
Sbjct: 181 RQGTPDHPRDLAAHRCLRIRLGDDRLYRWE--FERADEQIALDVPGAVTIDNTQFGLSLA 238

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G G+A LP   V+ +     L  ++ D        +  YP   +    L+   + I  
Sbjct: 239 LAGGGLAYLPQPCVEPSVARGELRVVLADWGPIGPGFHIYYPGRRQLPTGLRLLTDLIRE 298


>gi|114327824|ref|YP_744981.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315998|gb|ABI62058.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 310

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 126/288 (43%), Gaps = 8/288 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RV+  V   GS + AA  L + Q ++S +I  LE ++G +L  R+ R +++T+
Sbjct: 1   MDYLAAMRVYVRVVERGSMSAAARDLGIGQPAVSERIERLEVDLGTRLLRRNTRAISVTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          +     +QE      G LRIA    LG+ +L   L +    +P+
Sbjct: 61  VGAVFYERCKIAIEAADDALASVQEDM-PLRGTLRIAAPAGLGEVVLPSILLDLRNHHPE 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L+L+++ +D + +  D ++RL  P +  + + RKL  +     A+P YL+    P+
Sbjct: 120 LKVDLVLNDRIVDPTTEGVDISLRLGDPGE-GNFVARKLGHVSRVLVASPGYLERYGAPM 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL +H       L               R    P    + ++++  +    + G  I
Sbjct: 179 TPAELFRHPFARVSGLFNNGRLPLQ--TADGRLTSAPVDIVMTMSNWRPLHAILLDGGAI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +L + +  D+     L RI+ D   P F ++  Y        +++  
Sbjct: 237 GVLQEPVCSDDLAAGRLRRILPDFGLPGFDLHLLYSATRPIPSRIRTL 284


>gi|78045867|ref|YP_362042.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034297|emb|CAJ21942.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 334

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 121/288 (42%), Gaps = 9/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  +A   SF   A +L +S ++++R I+ LE  +G+ L  R  R +  T  G 
Sbjct: 36  IQEMTLFAALAEHTSFAGVARRLGISTATVTRTIAQLEARLGVLLVVRSTRTMRFTAAGQ 95

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  +LE  +         PSG L +      G   +   +  FL  YP ++ 
Sbjct: 96  QYASDCRRLLAELEDVESRAAGLHTLPSGLLTVTAPQMFGALHVTPVVAHFLSRYPAMRA 155

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++ + +  +  D AIR+   +  SSL    + ++     A+P YL     P    
Sbjct: 156 RTLLVDRVVPLLEEGIDVAIRIG-TLPDSSLTAIPVGSVRRMVCASPGYLAEHGIPQHPD 214

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L +H  I+             W   +D    E  + S L V+++ + +   V G G+  
Sbjct: 215 RLPQHATIS----TSAAERAPKWAFRLDGRAHEVDVASRLSVSAFNAAIVAAVDGWGLTQ 270

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P Y V+ +     LV +++        V+  + E  + + K++ F +
Sbjct: 271 VPSYQVRQHLQNGTLVSVLDAFEIAPEPVHVVHVEGRRGSSKVRTFVD 318


>gi|226953644|ref|ZP_03824108.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|226835618|gb|EEH68001.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
          Length = 311

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 130/299 (43%), Gaps = 6/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D    FY+V + G F+ A+E  H+S+S +SR+I  LE +  + L  R  R   +T
Sbjct: 1   MINSFDDFHYFYLVVKHGGFSAASEAEHISKSKLSRRIIELENKFNVSLIQRTTRHFKVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +    +V  ++E  +  L +   +P G ++I+    +    ++  L EFL  YP
Sbjct: 61  ELGQEFYEECCKVIAQVECAENVLLKQKSEPQGLVKISCPPLMMHFQIRKLLNEFLKAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            ++I L L ++ +D+  D  D AIR   +P + SSLI R ++       AAP  L+  + 
Sbjct: 121 KVEIALELTSRRVDLMHDDIDIAIRTSFEPNEDSSLIVRDVIQTEHCLVAAPELLQG-QH 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                EL  +  +  G    +       +   D+ +  P    ++ N    +      G 
Sbjct: 180 IHHYSELSHYPSVALGIQKNQYFWHLCHVKD-DKSVDVPYTPRVRSNDLAGVYYAVSDGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA LP   V+ +     L+ I+ +  +   TV   Y         ++   + +    R
Sbjct: 239 GIADLPYLTVQADIEKGKLIHILPEWKSNRGTVQLVYASRKGQRLVVEKLIDTLIENLR 297


>gi|307258347|ref|ZP_07540088.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306867531|gb|EFM99378.1| Glycine cleavage system transcriptional activator [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 296

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 132/295 (44%), Gaps = 14/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  +FT AA+ L ++Q+++S QI  LE  +G+ LF+R  R L LTE G+
Sbjct: 8   LNALKAFESAARHLNFTKAADDLFVTQAAVSHQIKLLEDFLGVSLFHRRNRLLELTEIGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  ++     +++  + +    L I+TT  LG + L   L +F   YPDI++
Sbjct: 68  QYFEEIQPLLEQIAVATEKVKLKNSRQI--LSISTTPSLGMHWLVPRLNKFHKKYPDIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           +L   ++D  +     D AI         +L   +LV   +   A+P YL++   P++  
Sbjct: 126 RLTTASQDEGLLGKDIDVAIYYGSG-NWQNLEAIELVQARIMILASPEYLRDH--PITKP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L+  NLI     +    +       ++    E     +  N+ + + Q    G G+ +
Sbjct: 183 EDLEGKNLIH----VCSHTKWKQMAEHLNLNNLEVESGPMYSNTSMGM-QAAKHGQGVVV 237

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLKAR 295
               + ++      ++E   T  +     Y  YP  +    K+K F  +I  + +
Sbjct: 238 ANRILAQNAIEEGSVIEAFTTDVYDEKAFYVVYPPQMAEIAKVKHFVEWITHEIK 292


>gi|260222259|emb|CBA31643.1| hypothetical protein Csp_D28150 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 314

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 118/296 (39%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   G F  AA  L +S + ++R ++ LE  +G +L +R  R ++L+E
Sbjct: 1   MDRLQSMRVFQRVIDEGGFAAAARALDMSPAVVTRLVADLEEHLGTRLLHRSTRKVSLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   ++         + + +G+L +  T  L   LL   L  F   YP 
Sbjct: 61  AGEAYLARVRAILQDIDEADALANLHTQELAGELHVLATPVLATYLLAPLLAGFRAKYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + ++    + S++  D  +         +++ RK+ T H    AAP YL+    P 
Sbjct: 121 ITLHIRVE-SFEEPSVEEHDVTLFAADEAYDGTIVARKIATTHGILVAAPSYLQRKGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG 240
           +  EL  H+ +     I +         T  +   +  ++  +  N   +++   + G G
Sbjct: 180 TPDELVAHDCLELSGSIARHKRWHLRNETNPQETVDLNLTPVISSNHIETLIAATLDGVG 239

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I      +V        LVR++   +     +Y   P       + + F +++  +
Sbjct: 240 ITPCTVELVGPLLATGELVRVLAPWVAGQVHLYAALPSRQYLPRRTRVFLDYLTEQ 295


>gi|254560466|ref|YP_003067561.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254267744|emb|CAX23591.1| putative transcriptional regulator, LysR family [Methylobacterium
           extorquens DM4]
          Length = 304

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 109/300 (36%), Gaps = 10/300 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F  +AR  SF  A  +L +S S++S  +  +E  +G++L  R +R +
Sbjct: 1   MRINRTELADLGTFLAIARHRSFRRAGLELGVSASALSHALKAMEARLGVRLINRTSRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQI--ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
           TLT  G  L       +  + +     +        +G++R+         LL   L  F
Sbjct: 61  TLTAAGEDLLASLDAPFAAIGSALDVLDQHRDPTAATGRIRLNVLEHASTLLLAPVLPLF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              +P ++I + + N  +D+    AD  IR    +    + QR    +      AP YL 
Sbjct: 121 HARHPQVEIDVRVSNDLLDVVDAGADAGIRYGGTVPQDMVAQRLSADLRWVVVGAPAYLD 180

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P   ++L  H  +       +           D  I       + +++    +   
Sbjct: 181 RQGIPDHPRDLAAHRCLRIRLGDDRLYRWE--FERADEQIAIDVPGAVTIDNTQFGLSLA 238

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G G+A LP   V+ +     L  ++ D        +  YP   +    L+   + I  
Sbjct: 239 LAGGGLAYLPQPCVEPSVARGELRVVLADWGPIGPGFHIYYPGRRQLPTGLRLLTDLIRE 298


>gi|209550098|ref|YP_002282015.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535854|gb|ACI55789.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 308

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 21/298 (7%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  V  +GSF+ AA  L ++Q ++SRQ++ LE     +L +R   GL+LT 
Sbjct: 1   MDIVSALRTFQRVVETGSFSAAAHDLDVTQPAVSRQVAALEGHFNTRLLHRTTSGLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G ++  +   +   +E          V  SGK+R++    LG   L   L + L  +P 
Sbjct: 61  EGERMLPMALRILEAVEELGDATGSDGVMASGKVRLSVPAPLGLY-LSEQLGDLLAAHPK 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+   +  D+  +  D  +RL   +  SSL+ R++        A+P YL     P 
Sbjct: 120 LSVELLFREQSSDMIEERLDLEVRLGS-VADSSLVCRRIGWTTAFLGASPAYLARKAPPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQ------- 233
           + +++  H  + +     +  +   W  +        RIS  L   S ++I +       
Sbjct: 179 TPKDIKDHECLCYN----RAGDAATWSFSNGSEDISVRISPRLTACSAVAIHRAALAGAG 234

Query: 234 -YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +    I  +PD I      L+ +MED       +   YP       ++K   +F+
Sbjct: 235 LAVLSH--IIAVPDIIA---GRLIPVMEDFQPSRLPITVVYPSRRNMPLRVKTVLDFL 287


>gi|167032791|ref|YP_001668022.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859279|gb|ABY97686.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 308

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 12/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LRVF VVAR  +F  AAE+L ++Q+++++QI GLE  + ++LF R  RGL LT+ G
Sbjct: 21  SLNALRVFEVVARHLNFRLAAEELGVTQAAVAQQIRGLEASLNLRLFERLPRGLALTDAG 80

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        ++     L+  S      L ++ T       L   L  F   +PDI 
Sbjct: 81  LGYSGSIRSALAMIDEATRLLRPQSAH----LTVSVTPTFASKWLIPRLGSFAQSHPDID 136

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++  ++    + D  D A+R  KP   + L    L+   + A A+P   +  + P S 
Sbjct: 137 LRVLATDRLSHFNTDGVDIAVRYGKPEIGAGLNSELLMEDRIVAVASPALFEGSQVPASF 196

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L   + I   D      +   +LA V     +P    L+ N     +   + G GIAL
Sbjct: 197 EQLQ--DFIMLHDAHNFWPQ---FLAAVFPQHVQPTAKNLRFNQTSLAIDAAISGQGIAL 251

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V D+     L+++    +    + Y  +P  L+    L   ++++  +
Sbjct: 252 ASLAFVSDDIVAGRLIQVFAQQLRLDKSFYLVWPRKLQQPESLGVVQHWLKQQ 304


>gi|184158933|ref|YP_001847272.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332874714|ref|ZP_08442586.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|183210527|gb|ACC57925.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|323518904|gb|ADX93285.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332737089|gb|EGJ68044.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 308

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF   AR  SFT AA +L+++Q +ISRQI  LE  +G +LF R  R ++LT  G +
Sbjct: 10  NSLIVFEAAARHLSFTKAANELNVTQGAISRQIRQLEEYLGKELFLRANRNISLTPTGLQ 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            ++        L+  Q   +    +   ++ +ATT  +    L   +  F      + ++
Sbjct: 70  YYQTI--YSALLDVAQATAEIKKWQGEHQITVATTNAMAALWLLPKVAAFQQNNEGVDLR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++  +   D+     D A+   + +  + +    L    +    +P+YL   +E  S +E
Sbjct: 128 ILTTDNISDLHKMDFDLALFYCR-VPPAGMRVTTLFPEEVFPVCSPNYLAQFKEDSSPEE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +    L+   D     +    W   V+ PI +P+ + + +N+Y  ++Q  + G G+AL  
Sbjct: 187 IFGKALLYLDDAQKDWITWAEWFEAVNYPIVKPK-NRVNINNYPMLLQAAINGQGVALAW 245

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKN-TGKLKAFRNFIFLKA 294
             +V D   +  LVR +E V+          P         +K FR+++  + 
Sbjct: 246 GSLVDDYLQSGALVRPVETVLRTQANFSMLEPADRGVIPSSVKHFRSWLLDQL 298


>gi|293412273|ref|ZP_06654996.1| transcriptional regulator [Escherichia coli B354]
 gi|291469044|gb|EFF11535.1| transcriptional regulator [Escherichia coli B354]
          Length = 298

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 130/290 (44%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+    F ++A  GS++ AA ++ +S+S +SR+++ LE  +G++L  R  R L LT  
Sbjct: 2   IDWNDYYYFALIADEGSYSQAALRVGVSKSVLSRRMAALEERLGVRLIQRTTRRLALTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  + E  +  +  +   P G LR++  + + +      + EF+  +P  
Sbjct: 62  GEQFAVECRALVAQGERARAVVMAAQESPQGMLRVSAPVFMAETWFGEFVSEFIARWPLA 121

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++QL+  N+ +D+  +  D A +     +  S+L  +KL T      A+  +L    +  
Sbjct: 122 KVQLLAINRPVDMVAEGIDIALVTASGALADSTLHYKKLHTQADILVASSQWLARHPQVK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L++ + I     +         L   D+ I     + LQ N+   ++Q  + G+G+
Sbjct: 182 AIDDLNRVDGIL---RLTNNGGSQWQLMNGDQEITLHPEARLQTNNIRVMLQAVLGGNGV 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           ALLP +  K    N  LVR+          +Y  +          + F +
Sbjct: 239 ALLPQFACKQGLANGELVRLFAPWSGIPRPLYALFAGRKGMPAIARYFMD 288


>gi|317407411|gb|EFV87374.1| hypothetical protein HMPREF0005_05338 [Achromobacter xylosoxidans
           C54]
          Length = 311

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 140/294 (47%), Gaps = 7/294 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +       GS + A+    +S +S+SR+IS LE  VG +L  R  R L LTE G +
Sbjct: 16  EGMALLVAAVDQGSLSGASRVSGISLASVSRRISALEERVGTRLLVRSTRALRLTEAGQR 75

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            +     +  +++  +  ++  + +PSG+LR+      G+  LQ  L +FL+ +P + + 
Sbjct: 76  YYAEAKRLLAEMDELESSMRIDAAEPSGRLRVTAPTLYGRVHLQPLLAKFLMQHPKVALD 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +++  +  D A+ + +   SSSL+ R+L +I     A+P YL     P S+Q+
Sbjct: 136 LHLLDRPVNLLEEGIDLAVLVGEQ-PSSSLVARRLGSIRWVLSASPDYLARRGIPHSLQD 194

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H+ + +  L     ED   L    +P      + ++ N+   ++     G+GI   P
Sbjct: 195 LAQHDGLVYSHL---ATEDAWTLIDKGKPTIVRVSTRMRSNTVDGVVTAAAAGAGIVYAP 251

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            + + D+     L  +M    TP   V+          GK+++   F+  K R+
Sbjct: 252 AWAIADHVAAGRLRPLMVASETPPRPVFALMTHQRLMAGKVRSLVEFLVEKLRE 305


>gi|330819608|ref|YP_004348470.1| Regulatory protein [Burkholderia gladioli BSR3]
 gi|327371603|gb|AEA62958.1| Regulatory protein [Burkholderia gladioli BSR3]
          Length = 301

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 130/300 (43%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D   L  F  VAR+  F  AA+   +S S +S  +  LET +G++L  R  R +  T
Sbjct: 1   MSADLSDLHAFVAVARANGFRGAAQATGISASGLSEAVRRLETRLGVRLLNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    +    ++++    +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGARLLSRLAPALDEVQSALDVVNGFRDRPAGTLRLNVPLSAARLVLPAIVPRFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           +I++++  D   +D+     D  IR  + ++   +I   +      M   A+P YL    
Sbjct: 121 EIRLEVAADESFVDVLAVGCDAGIRYEERLEQD-MIAVPIGPRVQRMALGASPAYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCV 236
            P   +EL  H  I  G    +    ++++   ++   EP    L     ++   +   +
Sbjct: 180 RPAHPRELLHHECI-LGRFPGRATVPWDFVRDGEKLRIEPAGQLLVELGAAFDLGVDAAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+G+  L +  ++   D+  L R++E         +  YP        L+AF +FI  +
Sbjct: 239 AGTGLVYLFEDWLRPHFDSGALERVLEPWWDSFPGPFLYYPGRRLVPAPLRAFIDFIRAE 298


>gi|260778971|ref|ZP_05887863.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605135|gb|EEX31430.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 299

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 14/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            DK+  F  V R+GS + A+   +LS S+ SR +  LE   G+ L +R  R LT T+ G 
Sbjct: 2   LDKMAFFVYVIRTGSISAASRHFNLSVSAGSRWLQELENHFGVPLCHRSNRLLTATQAGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    S +    E    +L++      G + IA T     + L   + +++   PD+  
Sbjct: 62  TLFDEFSPLVDNAERISRKLEDFQASDKGHINIAVTPVYANHFLIDKIADYITENPDVTF 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-----SSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            L +    +D + +  D  I      Q        L++R+++       A+P YL+   E
Sbjct: 122 NLNVTPWALDHASE-CDLMISANASFQGYREKDLLLVKREVMQCPFIVVASPDYLQRHGE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P   Q+L +H+ +    L        +W+   D    + ++   ++VN    +++  +  
Sbjct: 181 PQHPQDLTQHHCLFARTLTGSN----DWIFRQDAETLQMKVPKSVEVNDSDLLLKAALKS 236

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +GIA LP ++V++   N +LV +MED  T  +++   Y    K +  +  F++F+ 
Sbjct: 237 TGIAYLPQFVVEEAISNKSLVPLMEDYETSIWSLNLYYHPPQKASPLVTRFKDFLL 292


>gi|237801636|ref|ZP_04590097.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024495|gb|EGI04551.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 316

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 113/295 (38%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LTE
Sbjct: 7   DMSLDLLRAFEVAARLRSFTAAAIELGTTQPAVSQQIKRLEEKLATRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  + PD
Sbjct: 67  AGEILFSHVQAGLQSIDSGLIAITEQRQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  +   + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESHWLFSEEVFPVCSPQLIAGRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNEALRGFPLLHLRGESINNWFDWAGVFRALDIPQAPAPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWKHLVDDLLDQGLLCRPIAGSAISGHGYYVVLPQRKRRVQIVQQFMDWLASE 298


>gi|262195285|ref|YP_003266494.1| LysR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262078632|gb|ACY14601.1| transcriptional regulator, LysR family [Haliangium ochraceum DSM
           14365]
          Length = 297

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 130/287 (45%), Gaps = 5/287 (1%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  SF  AAEQ+ +S +++S+ +  LE E+G+ L  R  R + L+ +G       
Sbjct: 11  FVYAARHKSFRRAAEQIGVSPAAVSKAVQRLEDELGVVLLNRTTRRVRLSREGELYLARC 70

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
            E   +++  +  L E+   P G+L ++    LG  LL   L  F   YPD+++ L + +
Sbjct: 71  EEAMAQMQAGRDLLAEAQRAPVGELSVSLPPVLGP-LLVARLPRFTERYPDLRLHLRVSD 129

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           +   +  D  D A+R+   +  S+L+ R++++      AAP YL     P   ++L +H 
Sbjct: 130 RISRLVDDGVDVALRMGA-LDDSTLVARRVLSPRWVTLAAPAYLARHGTPGRPEDLAEHA 188

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
            I F     + +           PI       + ++S   ++     G GI  + D++  
Sbjct: 189 CIRFRAPWGREVAWSFRGERGAEPIALAAAGPIDIDSGPLLLDAAAAGLGICQVLDFMAA 248

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              ++  LV I+    +P   ++     A ++  +++A  +F+   A
Sbjct: 249 AQLESGRLVEILGAYASPGPAIHALCLPAQRSAPRVRALMDFLARLA 295


>gi|330984478|gb|EGH82581.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 307

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 127/296 (42%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + +S +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDMSAAVASAALKRIERQLGARLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  L  S  +  G L+++   DLG+N+L   L EF   +P + +
Sbjct: 64  GFLEYARAALGSLEEGRRLLASSQDRCEGVLQLSAPSDLGRNVLLPWLDEFQQQHPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPLSI 183
           +L+LD++  D+     D A+R  +P + SSL+    L        AAP YL+   EP  +
Sbjct: 124 RLLLDDRIADLFRQPVDVALRYGEP-EDSSLVALPVLPDNRRVLCAAPSYLQRHGEPQQV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +HN + F  ++   + D   L    R I          +    + ++ V G G+A 
Sbjct: 183 EQLAQHNCLLF--MLGDRVHDRWTLNDGKREISLTVSGNRFSDDADVVRRWAVAGEGVAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V  +    +L  +M D+I     +        + +  +      +  + + 
Sbjct: 241 KSWLDVAADVRAGHLKVLMPDLIGERAPLNLLCAHRAQLSKPVILLLEMLRSRCKQ 296


>gi|171319059|ref|ZP_02908184.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095736|gb|EDT40691.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 328

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 118/291 (40%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE+ +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEQQSFRRAAHHLGVSNALVTRSIAMLESHLNTRLIHRTTRNLSLTEAGLRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  +  +P+G LR+  +  L    L   +  F   YP++++QL 
Sbjct: 67  DGCRALLEEFDHLEASVAHAVREPAGTLRVVASGLLSPLALTPLVSGFRHRYPELRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  I     +  + +LI   L      A AAP YL+   EP +  +L
Sbjct: 127 VAEGPLDVLESGYDVGIVTGNRLDGNPTLIGHALPAAPFVACAAPAYLERRGEPRAPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +       +    +  +                VN    +    V GSGI +LP+
Sbjct: 187 PGHDWVALAP--HQHAPAWRLVGHDGATHSITLRPTCTVNQLALVHAAAVAGSGIVVLPE 244

Query: 247 YIVKDN---PNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             V D      LVR++       P   +   YP       + ++F      
Sbjct: 245 PCVADALATGTLVRLLPTYQIDDPDAQLSLVYPNRQYVPARTRSFIEHALE 295


>gi|146338914|ref|YP_001203962.1| LysR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146191720|emb|CAL75725.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. ORS278]
          Length = 301

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 136/295 (46%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +  + + VF+ V   G  T AA  L + +SS+S+ ++ LE ++GI+LF R++R + +T
Sbjct: 1   MKWRIEDIPVFHAVVADGGMTGAARTLGMPKSSVSKSVARLEQDLGIRLFDRNSRRVRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    +   ++  ++      +      PSG+L +A      + +L  NL EF   YP
Sbjct: 61  REGELFFQQCQKILDQVSEADAVMTGLVGVPSGRLSVALPPAFCEEILAPNLAEFHRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ +    + +D+  D  D A+ +    + S L Q+ L+   +    +P YL      
Sbjct: 121 RIELDIEALTRSVDMLADRFDIAVVVGVQ-EDSELAQKVLIGGRLIWVTSPAYLAAHDIG 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++ L+ H LI       + +        V   +G       ++N+ +++ +    G+G
Sbjct: 180 DDLRALEHHLLICERRYGDRTLTVKQHGHLVRFDVGP---QVTRINNPVAVRRAVAHGAG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFI 290
           ++ LP++   +      LV I +DV+  +    +   +P     + + +AF +F+
Sbjct: 237 LSFLPEHYCVELLSEGRLVEIGKDVVFDTRAAQLTAIFPSRKLISSRARAFLDFL 291


>gi|148545328|ref|YP_001265430.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148509386|gb|ABQ76246.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 295

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 134/290 (46%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEQSLGTALFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ ++   P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQAIT-PLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  LI RKL    +  YA+  YL       +
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQDYLDRAPPLRN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ I + D +      F+                 +  S ++       G GIA
Sbjct: 180 REDLARHSWIGYVDDL-----LFSQELLFLNSFCRAPNVVFRSTSVIAQQAAARAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LP+Y+ + +P LVR++    T   + + C    L  + +L+   +++  
Sbjct: 235 VLPNYMARHDPTLVRVLPG-ETIQRSYWICTRRELHKSVRLRVVWDYLLA 283


>gi|148975916|ref|ZP_01812705.1| substrate-binding transcriptional regulator, LysR family protein
           [Vibrionales bacterium SWAT-3]
 gi|145964661|gb|EDK29914.1| substrate-binding transcriptional regulator, LysR family protein
           [Vibrionales bacterium SWAT-3]
          Length = 294

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 123/290 (42%), Gaps = 15/290 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L +F  +A+  +FT AAE+L +S+S +S QI  LE ++   L  R  R + LT++G 
Sbjct: 7   IERLILFVELAQQLNFTKAAEKLGISKSYLSEQIKRLEGDLQCPLLVRTTRSVRLTQEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +    +  ++   +  + E      G LR+       +  L    ++F   YP+++ 
Sbjct: 67  RALQQGLTIRSQVLQLERSVSEQHDIVKGTLRLTAPKMFTEVFLFDICQQFRQQYPEVRF 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++     + +++ D  D A R        ++I ++L+T      A P YL     P S+ 
Sbjct: 127 EINSSYTNFNLNQDDIDIAFRATNTPPD-NMIAKRLITYQHDLVATPSYLDQFGRPTSVS 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  +         +    W     +         L  N    + Q  ++GSGI  +
Sbjct: 186 DLNSHQCLA-------TLHQTEWPL---KSANIDVSGWLSSNDNHLLKQQAMVGSGIIRI 235

Query: 245 PDYIVK---DNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y V    +   L R++ D       ++Y  YP+ +    K + F  F+
Sbjct: 236 ASYYVDKEVERGELERVLPDECLQQGNSIYLFYPQVIYPAKKHQMFIKFV 285


>gi|186471289|ref|YP_001862607.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197598|gb|ACC75561.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 301

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 127/297 (42%), Gaps = 9/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L  F  VAR+G F  AA    +S SS+S  +  LET++G++L  R  R +  TE 
Sbjct: 1   MELNDLAAFMSVARAGGFRDAARMSGVSASSLSIAVRRLETKLGLRLLNRTTRSVAPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    S ++ ++E     L      PSG L++       + +L   ++ FL  YPDI
Sbjct: 61  GQRLIEKLSPLFSEMEAALDVLNVFRETPSGTLKLNVPSSAARIVLPSIIEPFLKTYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCREP 180
           ++++++++  +D+     D  IR  + ++   +I   +          AA  YL     P
Sbjct: 121 RVEVVVEDGFVDVLSIGCDAGIRYDERLEQD-MIAMPVGPRVQRFATAAAREYLDTHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVLG 238
              +EL +H  +  G      M  +++    +    +P   +      +    +   + G
Sbjct: 180 EHPRELLEHACLR-GQFAGGAMPTWDFERDGEIVRIDPSGPLVVRPGAAIELAVSAALAG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G+  L + ++K   D+  L  I+E         +  YP        L+AF +F+  
Sbjct: 239 VGVIHLFEGMLKPHLDSGALEPILEPWWQCFSGPFLYYPGRRHLPAPLRAFVDFVKA 295


>gi|148253680|ref|YP_001238265.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405853|gb|ABQ34359.1| putative transcriptional regulatory protein, LysR family
           [Bradyrhizobium sp. BTAi1]
          Length = 301

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 136/295 (46%), Gaps = 9/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +  + + VF+ V  +G  T A+  L + +SS+S+ ++ LE ++GI+LF R++R + +T
Sbjct: 1   MKWRIEDIPVFHAVVATGGMTGASRSLGMPKSSVSKSVARLEQDLGIRLFDRNSRRVRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    +   ++  ++      +      PSG+L +A      + +L   L EF   YP
Sbjct: 61  REGELFFQQCQKILDQVSEADAVMTGLVDVPSGRLSVALPPAFCEEILAPKLAEFHHRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ +    + ID+  D  D A+ +    + S L Q+ L+   +    +P YL      
Sbjct: 121 RIELDVEATTRAIDMLADRFDIAVVVGVQ-EDSELAQKVLIGGRLIWVTSPAYLAAHDIG 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I+ L+ H +I       + +        V   +G       ++N+ L++ +    G+G
Sbjct: 180 DDIRALEAHLMICERRYGDRTLTIKQHGHLVRFDVGP---HVARINNPLAVRRAVAHGAG 236

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFI 290
           ++ LP++      D   LV I ++V+  +    +   +P     + + +AF +F+
Sbjct: 237 VSFLPEHYCVELLDEGRLVEIGKEVVFDTRAAQLTAIFPSRKLISSRARAFLDFL 291


>gi|206562004|ref|YP_002232767.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038044|emb|CAR53990.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 290

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 126/287 (43%), Gaps = 8/287 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA+ L + Q+++ R+++ LE  +G  LF R ++G   T  
Sbjct: 1   MNWDDARVFLAIHRERTLRRAAQTLGVDQATVGRRLATLEHMLGATLFLRSSKGYLPTPV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +                + +G+++I TT  L    +  ++      +PD+
Sbjct: 61  GELALRAAEAMEQHAHELVRLTHGVDRRLAGEVKITTTDALAIEFVMPSIARLHAKHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L      ++++   AD AIR  +P ++  L+ R+L    M  +A+P YL+   EP  
Sbjct: 121 SVALNTSTHILNLAKREADIAIRTVRP-ENPDLVARRLACWDMGLFASPDYLRRHGEPER 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +    H+L+ +   I    +          PI   RI   + NS L +      G G+ 
Sbjct: 180 GRAFAGHDLVVYQPYIDASRKP----TLAGEPIDGGRI-VTRTNSNLMMRAALRAGLGVG 234

Query: 243 LLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRN 288
            +P ++ + +  L RI  D +    + V+      L++T +++A  +
Sbjct: 235 EIPVHMGERDG-LTRIWPDRMRQSPYEVWLVTHRDLRHTARIRAAID 280


>gi|163743792|ref|ZP_02151165.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161382941|gb|EDQ07337.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 292

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R +  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHVDAIEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+      SG+L + T++     LL   L EF   +P++ 
Sbjct: 63  QDLLRVAQATDDQFGQLVGRLKGHGDAVSGEL-VVTSLSSMSTLLVPALTEFQRRHPELV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+ +  ++   +    A  AIR   P +    + +  +      YA+  YL+       +
Sbjct: 122 IRFLTGSRLFRLEYGEAHVAIRAGSPPEQPDNVVQPFMRQQHGLYASASYLERFGPLKGL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ++  H  I   D+  +      WL    R          +  + +S+ +  + G+GI  
Sbjct: 182 DDMANHRFICNDDIDSRAPYS-RWL----RAHAPESALSFRCVNAVSMQEALLAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L  +    +P L +IME +   +  ++      L  T K+++F +F+  +A+ W
Sbjct: 237 LTRWEAARHPGLTQIMEPLPEWAGELWLVTHVDLHRTTKVQSFLSFLKAEAKAW 290


>gi|238789174|ref|ZP_04632962.1| Transcriptional regulator [Yersinia frederiksenii ATCC 33641]
 gi|238722706|gb|EEQ14358.1| Transcriptional regulator [Yersinia frederiksenii ATCC 33641]
          Length = 303

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 139/300 (46%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLSHARQILGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMISGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRIGA-LRDSTIHARLLGASRVRILASPDYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +I EL  H+L+ F        E  N  +    P G   I+  L  +S  ++    + G 
Sbjct: 180 HTIDELANHSLLGFTQP-----EFLNQWSLPHLPGGRSSITPNLAASSGETLRLLALQGE 234

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GI  L D++ + +     LV +M D I  ++  +   Y    +   ++  F +++  + +
Sbjct: 235 GIVELSDFMTQADQLAGRLVEVMADKILETWQPINAVYYRNTQLAARITCFLDYVSEQIK 294


>gi|319782545|ref|YP_004142021.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168433|gb|ADV11971.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 303

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 116/297 (39%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   AR  SF+ AA +L+++  ++SR I  +E  +GI+LF R  R + LT  G+
Sbjct: 8   LTALPAFEAAARHLSFSKAAGELNVTHGAVSRAIRNIEDRLGIQLFDRGTRSVRLTSVGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                        +     +  +  + +G L ++T+       L   L  F     DI +
Sbjct: 68  AYASEVR--TALDQIAAATIAATPDRTAGILNVSTSDGFAGRWLVPRLHRFHRANADIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L       D   D  D AIR  K    + +    L    +    +P  L+         
Sbjct: 126 RLSTSGVLSDFVSDGIDIAIRYGKGG-YTGVTAEFLADEEVFPVCSPELLQGEHPLRQPG 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI     I    +   WL        +P+    + +S    ++  V G G+ L 
Sbjct: 185 DLRHHKLIHDAFRI----DWATWLQQAGVDGIDPKRGV-RFDSATFAVEAAVHGEGVLLG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
              +V  +     LVR  +  +  +   Y  Y +      K+KAFR+++F + A DW
Sbjct: 240 RSALVSADLAAGRLVRPFDLALKSASRYYVVYRDGALRQKKIKAFRDWLFAEVAADW 296


>gi|260429909|ref|ZP_05783884.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
 gi|260418832|gb|EEX12087.1| transcriptional regulator, LysR family [Citreicella sp. SE45]
          Length = 299

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 129/294 (43%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FDW  +  F  +AR+G  T AA++L +  +++SR++  LE  +  +LF R   G +LT 
Sbjct: 4   DFDWGAMEWFLAIARTGRLTLAAQKLGIDHTTLSRRVKTLEEALDARLFDRTVSGYSLTP 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG +       V         ++   + + +G +RI      G + L   L       P 
Sbjct: 64  QGERFLAAAQRVETIALQAASDISGETSRIAGTVRIGAPEGFGSSFLAPALVRLGQAQPG 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+   +   ++   AD A+ L +P     L   KL    +  Y +  YL+    P 
Sbjct: 124 LKLELVTLPRQFSLTKREADMAVSLARP-SKGRLHAHKLTNYELGLYGSHGYLRERGRPE 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H ++ +   +    E  +++  + R I       L  +S  + M   + G G+
Sbjct: 183 TLSDLRHHGILGYIQDLIYARE-LDYIPQLSRDIA----PWLTSSSLPAQMNMTLAGGGL 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LP ++  D+  L +++ D +    + +      L++  +++    FI  + R
Sbjct: 238 CVLPRFLAHDHEGLEQVLPDEVRLVRSFWLVVHSELRDLSRIRICSEFITEEVR 291


>gi|220920852|ref|YP_002496153.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219945458|gb|ACL55850.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 311

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 9/299 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +RVF      GS   A   L  S +++SR I+ LE +VG  L +R  R + L+E
Sbjct: 1   MDRIDAMRVFVAALDEGSLAGAGRLLGRSPAAVSRAIAFLERQVGAPLLHRTTRAIKLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       V   L+  ++        P G L I      G+ +L+  +  FL  +P 
Sbjct: 61  IGERYAAACRRVLVDLQEAEMVAAGEQAAPRGTLTITAPPISGEEILRPIVDAFLEAFPT 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+L +++ ++  +  D A+R+ +   SS +  R    +     A+P YL       
Sbjct: 121 VSVNLLLLDRNANLVEEGIDVALRVAELPDSSMVAVRVGGGVKRVVVASPRYLAMHPRIE 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGS 239
              +L KH ++T         + + +      PIG        L VNS  + +   V G 
Sbjct: 181 QPSDLAKHRIVTTAHF---GQDAWVFPPAAGSPIGRSIHFKPRLVVNSVRAALGAAVGGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+  L  Y V +   + +L R++ D   P+  V    P+   +  K++AF +F   + R
Sbjct: 238 GVTRLYTYHVAERVHDGSLQRLLRDAEPPAMPVNLLMPQGRMSVPKVRAFIDFAAPRLR 296


>gi|254523630|ref|ZP_05135685.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
 gi|219721221|gb|EED39746.1| transcriptional Regulator, LysR family [Stenotrophomonas sp. SKA14]
          Length = 298

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 13/300 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  +F  V  +GS T AA++L LS++ +S  +  LE E+G+ L  R  R L LTE G
Sbjct: 3   SLDRFDIFRAVVEAGSLTAAADRLGLSRAVVSFNLKRLEQELGVTLLLRSTRHLALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +   +     +      +    +  G LR+ TT +  Q  L   L+ F   +P +Q
Sbjct: 63  EQFLQHCVQALDAAQAAIDAARRDQHQLQGVLRLTTTPEYAQLRLIPALEAFRARHPALQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L       D+  +  D AIRL + +  S L   +L    + A AAP  L       + 
Sbjct: 123 LHLSTSPAPADLIPERFDLAIRLGR-LPDSGLHASELEQHPLCAVAAPSLLARLSSADAA 181

Query: 184 QE---LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +   L     + +  L    +   +    +      P  + ++V+   S+  + V G+G
Sbjct: 182 DDPVQLGMLPRLGYPRLADVPVITPDGSDALF--ATNPANAVVRVDGASSLRAFAVAGAG 239

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           + +LP ++++D+     L  ++     P  +VY  YP + + + K++   +F+    RDW
Sbjct: 240 VTVLPHWLIEDDLAQDRLRPVLRHHRFPQQSVYAVYPHSTQPSPKVRQLIDFL----RDW 295


>gi|218662420|ref|ZP_03518350.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 300

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 124/290 (42%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ + +F  V ++GS + AA ++ +   ++SR+I+ LE+ + ++L  R ARG   TE 
Sbjct: 1   MDYNAVSMFIAVTQTGSLSAAATRMGVPLPTLSRKIAELESHLKVQLLERTARGCRATEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G++L    S     L+  +  +  +  +  G+LR++             L  F   +PDI
Sbjct: 61  GARLFEHASGGIEALQEAERLIVSAQARLVGRLRLSLPQSFEPWW--ELLGLFQRAHPDI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI +    + +D+  D  D A+R+   I   +++ R ++T      A+P  ++       
Sbjct: 119 QISVYSTERRVDLLSDGVDVALRVGA-IADDTVVARHMLTFRHVLVASPRLVERHGRLNH 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L ++    +G  +            +     +   +   VN YL +    V G    
Sbjct: 178 PADLSRYPCAAWGSALDARPVW------MLGGHAKQVSATFTVNDYLHLRARAVAGDIAT 231

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LP ++  +      L++++     P   ++  Y      +  ++A+ +F
Sbjct: 232 ELPSFLAAEPLKKGELLQLLPKHPFPDTALHLVYRRQRHPSTIVRAYLDF 281


>gi|83594805|ref|YP_428557.1| LysR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577719|gb|ABC24270.1| transcriptional regulator, LysR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 293

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 13/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + VF   A +GS + AA +L ++  + +R+++GLE  +G++L  R  R ++LT +
Sbjct: 1   MDTEAVTVFVTAAAAGSLSAAARRLAITPMTATRRLAGLERVLGLRLMQRTTRAVSLTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +       +  L+ +++  SG LR+ T    G+ ++   +   L  +P++
Sbjct: 61  GEAFLPYAQAMVESEAAGRAMLRSAAIGVSGLLRVTTPAAFGRKIIAPLIPGLLRAHPEL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L L++  +DI    AD AIR+   ++ S+LI  K+        AAP YL     P  
Sbjct: 121 RIDLDLNDAVVDIVATGADLAIRIA-VLRDSALIAHKVAASPRVLCAAPAYLAERGTPRL 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
           + +L  H+ +T            +W    DR   + R+      N   ++   C+ G+GI
Sbjct: 180 LADLAGHDCLTQTGTT-------HWPFQADRRDLKARVNGRFSANGIEALHGACLGGAGI 232

Query: 242 ALLPDYIVKDN---PNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ALL  + V D+     LVRI +ED      +++  YP A     KL+ F   +    R
Sbjct: 233 ALLALWNVGDDLAAGRLVRITLEDAAALDLSIWAVYPSARFVLPKLRVFIQALEGALR 290


>gi|300309384|ref|YP_003773476.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300072169|gb|ADJ61568.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 121/284 (42%), Gaps = 6/284 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++ F  +  +GS + AA QL  +Q +ISR++  LE  +G++L  R    + +TE G + +
Sbjct: 1   MQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDGERCY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E+    +  + EL+ +     G LR+      GQ  L G L +F+  +P I ++ +
Sbjct: 61  ERAKELLAGWDDFENELRGARQHAEGALRVVVPHAFGQKQLIGPLAQFMRQHPRITVEWL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++  D      DCAI++ + +   S++   L  +      AP  L     P    +L 
Sbjct: 121 LHDRAADFISQGIDCAIQVGE-VNDPSVVAIHLAEVPRMTVVAPSVLAGRPMPRHPADLA 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +   I       + +   +  A             L  +S  ++    V G G+A+   +
Sbjct: 180 ELPWIAIPAFYRREVTLTH--AHTGEQRQVSFRPQLVTDSLYALRNTAVAGLGVAVGSSW 237

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           ++ ++     LV+++ D       V   YP A     +L+ F +
Sbjct: 238 VLNEDVAAGRLVQLLPDWQPAPLPVCLLYPYARFQPARLRHFID 281


>gi|237808258|ref|YP_002892698.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500519|gb|ACQ93112.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 298

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 4/290 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F VVA+  SFT AA +L +SQS++S  I GLE  + ++L  R  R ++LTE G
Sbjct: 5   NINDLLSFLVVAQESSFTKAAAKLGVSQSALSHSIRGLEERLNLRLLNRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L +  S    ++E     L E    PSG +RI+      QN+L   L++FL+ YPDI+
Sbjct: 65  DRLRQTLSPRIEEIEEELDALNEEQNGPSGSIRISAPEYAAQNILWPVLEKFLVQYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ ++N   DI  +  D  IRL + +    +  R    + M     P Y  N   PL  
Sbjct: 125 VEVNIENSFTDIVAERYDAGIRLGEQVAKDMIAVRISPDLKMAVVGTPSYFSNREIPLIP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  I         +  +      +R I       L  N+    ++  + G G++ 
Sbjct: 185 EDLHQHRCINLRPSTAGGVYAWE-FEKENRNINVRGEGQLIFNTTTQSLKASLAGFGVSY 243

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P+ ++K       L+ ++ED        +  YP   ++        + +
Sbjct: 244 APENLIKGYVKEGKLISVLEDWCPTFPGFHLYYPSRKQHKKAFALLIDAL 293


>gi|302185698|ref|ZP_07262371.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 298

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 120/298 (40%), Gaps = 11/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  V  +  F  AA     S SS+S  I  +E+ +G++L  R  R +  T
Sbjct: 1   MTTDIQDLLAFVAVVNARGFREAARLSGKSASSLSDAIRRMESRLGVRLLNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+KL         ++E+    + +   +PSG LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGAKLMERIVPALGEVESALDVVNDFRDRPSGTLRLNVPVSAARLVLPSIITPFLQTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++ +   +D+     D  IR  + ++   +I   +          A+P YL+   
Sbjct: 121 DIRLEVVTEESFVDMLAAGCDAGIRYDERLEQD-MIAVPIGPRFQRFATAASPAYLQARG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV---NSYLSIMQYC 235
            P   ++L  H  +      P  +            +       L V    ++   +Q  
Sbjct: 180 RPEHPRDLLAHACL--RGKFPSGVIPLWEYERDGETVKLDPTGPLTVRIGGAFDLTVQAA 237

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G G+  L +  ++   D+  L  I+E         Y  YP        L+AF +FI
Sbjct: 238 IDGLGVVHLFEDWLRPHLDSGALEPILEPWWQRFTGPYLYYPGRRYLPSPLRAFIDFI 295


>gi|145300477|ref|YP_001143318.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853249|gb|ABO91570.1| transcriptional regulator LysR family [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 289

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 131/288 (45%), Gaps = 7/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R F  +AR G+   AA  L + Q+++ R+I+ LE  +G KLF R  +   L+  
Sbjct: 2   INWDDARFFLALARQGTLRGAAGVLGVDQATVGRRITALEQSLGSKLFIRTPKLYDLSPL 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +    S +   ++  + +         G++RIATT  L Q  +   L      +P I
Sbjct: 62  GETMLADASAMEQAIQAIERKASAGDQSLCGEVRIATTDTLAQAFVLPALTLLRERHPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L       DI+   AD AIR  +P     L+ ++L TI M  YA+  YL     P  
Sbjct: 122 RLSLQTAVNVSDIACLEADLAIRGMRPDNDE-LVIKRLTTIEMGLYASHDYLARHGTPKC 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +H L+ F     K +   +W +    P+ EP +  LQ N+ L ++     G GIA
Sbjct: 181 GLGLSQHALLLFA----KELVSRHWHSLCGEPLHEPNV-VLQCNAQLLLLAAARQGLGIA 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LL  ++      LVR++   ++    ++      L+   +++A  + +
Sbjct: 236 LLSTFLADKETELVRVLP-ALSDPVDIWLVLHPNLQKASRVRAVVDAL 282


>gi|39934632|ref|NP_946908.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39648481|emb|CAE27003.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           CGA009]
          Length = 324

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 143/291 (49%), Gaps = 6/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DWD L+VF   AR GS   AA +L + QS+ISR+I+ LE+ +GI LF R   GL +TE
Sbjct: 6   SLDWDDLKVFLHAARGGSLGSAARRLKVDQSTISRKIAHLESTLGIALFERLPSGLRVTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +   +   + ++Q S  + +G++R+AT   +    L          +P+
Sbjct: 66  LGDRLLCHAERIESAVIAMREDVQCSGGRTAGRVRLATMEGIASLYLAAQFSRLHRQHPN 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+   + + ++   AD  +   +P +   ++  ++    +  YA+  Y+     P 
Sbjct: 126 LIVELLTSPQAVSVNRREADLFLSFFQP-RGQGMVSERIGCFELGLYASEDYIARNGLPC 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L +H  IT+ D + + ++   WL   D  I  P +S    NS ++ M     G G+
Sbjct: 185 SSADLKRHRFITYIDDLIQ-LDSVRWL---DDVIKTPVVS-FHSNSMIAQMNAAAGGLGL 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LLP +  K   +L+ I+ D ++ S  ++      L+   +++A  +F+  
Sbjct: 240 VLLPSFATKGRCDLIPILHDRMSTSRELWINVHTDLQFVPRIRAVSSFLKA 290


>gi|254252674|ref|ZP_04945992.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124895283|gb|EAY69163.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 300

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 117/298 (39%), Gaps = 7/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+  F   A  +  S S +S  +  LET++G++L +R  R +  T
Sbjct: 1   MQVDLGDLNAFVAVARAKGFREGARTVGASASGLSEAVRRLETQLGVRLLHRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +    ++E     +     +P+G L++   +   + +L   +  FL  YP
Sbjct: 61  EAGQRLLARLTPALSEVEAALDVVNSFRDRPAGTLKLNVPMSAARLVLPSIVPRFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++ D   +DI     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 DIRLEIVADESFVDILEVGCDAGIRYDERLEQD-MIAVPIGPRTQRFATAAAPGYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P    EL  H  +          + +F     V R      +      +   ++     
Sbjct: 180 RPRHPSELLDHACLRGRFASGTMPLWEFERDGEVVRVDPSGPLVVQIGGAVDLVVDAARS 239

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G G+  L +  ++ +     L  ++E    P    Y  YP        L+AF +FI  
Sbjct: 240 GLGVVHLYEEWLRPHLASGALEPVLERWWRPFSGPYLYYPGRRFVPAPLRAFIDFIKA 297


>gi|192290148|ref|YP_001990753.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192283897|gb|ACF00278.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 324

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 143/291 (49%), Gaps = 6/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DWD L+VF   AR GS   AA +L + QS+ISR+I+ LE+ +GI LF R   GL +TE
Sbjct: 6   SLDWDDLKVFLHAARGGSLGSAARRLKVDQSTISRKIAHLESTLGIALFERLPSGLRVTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +   +   + ++Q S  + +G++R+AT   +    L          +P+
Sbjct: 66  LGDRLLCHAERIESAVIAMREDVQCSGGRTAGRVRLATMEGIASLYLAAQFSRLHRQHPN 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+   + + ++   AD  +   +P +   ++  ++    +  YA+  Y+     P 
Sbjct: 126 LIVELLTSPQAVSVNRREADLFLSFFQP-RGQGMVSERIGCFELGLYASEDYIAQNGLPC 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L +H  IT+ D + + ++   WL   D  I  P +S    NS ++ M     G G+
Sbjct: 185 SSADLKRHRFITYIDDLIQ-LDSVRWL---DDVIKTPVVS-FHSNSMIAQMNAAAGGLGL 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LLP +  K   +L+ ++ D ++ S  ++      L+   +++A  +F+  
Sbjct: 240 VLLPSFATKGRCDLIPVLHDRMSTSRELWINVHTDLQFVPRIRAVSSFLKA 290


>gi|325123154|gb|ADY82677.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 300

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 122/296 (41%), Gaps = 9/296 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+    +A+ G+F  AA +L +S +++S  I  LE  +G++LF R  R ++LTE G
Sbjct: 5   NLNDLKAVMAIAKRGTFRGAAIELGMSTTALSHAIGKLEGNLGVRLFNRTTRSVSLTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        + +    ++     PSG LRI       + ++   + EFL  YP++ 
Sbjct: 65  RLFVEQVGPALQNIHSALDIVRSQRESPSGTLRINAAAFAAREIISPVIIEFLRRYPEMN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPLS 182
           I L+ + K +DI  D  D  IR+   +  S +I   L  +       +P Y +   +P  
Sbjct: 125 IDLVTEGKLVDIIADGFDLGIRVAH-LVPSDMIAVSLGKLQKYVVVGSPEYFERYGKPQI 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L +H  I    +       F W    +  I +  +   + ++         +   G+
Sbjct: 184 PTDLFRHKCI---RVRLPDGALFRWKFEKNGEIIQIDVQGPITLDEASLSRAAVLESIGL 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               +  V+   ++  LV +++D +     +   Y      +  LKAF   +   A
Sbjct: 241 GYFMEQDVRTEIESGQLVSVLDDWMPCMSGLCLYYSGRRNQSAGLKAFLALVREVA 296


>gi|254487259|ref|ZP_05100464.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
 gi|214044128|gb|EEB84766.1| transcriptional regulator, LysR family [Roseobacter sp. GAI101]
          Length = 298

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 120/291 (41%), Gaps = 13/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F VVA +G F  A   L LS S++S  + GLE   G++LF R  R +TLT  G
Sbjct: 5   DLGVLNFFRVVAETGGFRKAEALLDLSPSALSHAMRGLEQRQGVRLFNRTNRSVTLTHAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          +E     L     +P+G LRI    D  + ++   L +++  +P++ 
Sbjct: 65  FELLADVQAGLDAIEAGLEGLNRYRDRPAGTLRINVPSDAARLVIAPVLADYMRQFPEVS 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLS 182
           +++ +++  IDI     D  IR    +    +I   L       A A+P YL +      
Sbjct: 125 VEIEINDHVIDIVQKGFDAGIRYGGTVP-EDMIALPLGRELRWIAVASPEYLASAPPLEH 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGS 239
             +L  H  I       +    +NW   ++R   E  +S    + VN  +  ++    G 
Sbjct: 184 PDDLKAHRCIGLRMGTGRF---YNW--ELERGSEEVVLSLDWAVIVNETVLSLEIAENGG 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           GI    +  ++    +  LV ++ D  +     +  YP   +    L+A  
Sbjct: 239 GICYTLEDRIRPQLADGRLVHVLPDWWSMGPAFHLYYPSRRQLPEALRALL 289


>gi|294627512|ref|ZP_06706095.1| regulatory protein, LysR:LysR, substrate-binding [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598143|gb|EFF42297.1| regulatory protein, LysR:LysR, substrate-binding [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 331

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 121/288 (42%), Gaps = 9/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  +A   SF   A  L +S ++++R I+ LET +G+ L  R  R +  T  G 
Sbjct: 33  IQEMTLFAALAEHTSFAGVARHLGISTATVTRTIAQLETRLGVLLVVRSTRTMRFTAAGQ 92

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  +LE  +         PSG L +      G   +   L  FL  YP ++ 
Sbjct: 93  QYASDCRRLLAELEDVESRAAGLHTLPSGLLTVTAPQMFGALHVTPVLTHFLSRYPAMRA 152

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++ + +     D AIR+   +  S+L    + ++     A+P YL     P    
Sbjct: 153 RALLVDRVVPLLEKGIDVAIRIG-TLPDSTLTAIPVGSVRRMVCASPGYLAEHGIPQHPD 211

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L +H  I+             W   +D    E  + S L V+++ + +   V G G+  
Sbjct: 212 MLPQHATIS----TAAAERAPKWAFRLDGRAHEVDVASRLSVSAFNAAIVAAVDGWGLTQ 267

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P Y V+++     LV +++        V+  Y E  + + K++ F +
Sbjct: 268 VPSYQVREHLQNGTLVSVLDAFEIAPEPVHVVYVEGRRGSSKVRTFVD 315


>gi|116252262|ref|YP_768100.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256910|emb|CAK08004.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 304

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 130/294 (44%), Gaps = 13/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L V+  V R+GSF+ A+ +  ++ S+I RQI  LE ++G+ L  R  R L LT+ GS 
Sbjct: 8   EHLAVYVDVVRTGSFSAASRRRAVTPSAIVRQIDALEQDLGVSLLVRSTRALALTDAGSH 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   L  T  E+       +G LRIA     G+  +   L      +PD+ ++
Sbjct: 68  LFDRAQRLLDDLADTHAEVAAFDDAVTGTLRIACFPTFGKRYVIPVLAALAQQHPDLHVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D   +  D  +R+ + +Q SSLI  KL  ++    A+  YL     P  I +
Sbjct: 128 LDLTERLADPVAERLDLVVRMGE-LQDSSLIATKLAPLNRILVASEGYLAVHETPRVIGD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L K  L+    L    +  ++ L          ++   + + + ++    + G GIA LP
Sbjct: 187 LRKQRLL--DKLHGNDLLGWSDLFGTSAGHASNKV-AFRSDDFEALNGAALSGMGIAFLP 243

Query: 246 DYIVKDN---PNLVRI-MED--VITPSFTVYFCYPEALKNT-GKLKAFRNFIFL 292
            ++   +     LVR+ +ED         +Y     AL+    K++AF   +  
Sbjct: 244 SWVAGPSVKTGGLVRLPLEDERWNERPSGIYLL--RALQMPSAKIRAFSEALKA 295


>gi|15889471|ref|NP_355152.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157339|gb|AAK87937.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 314

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 126/293 (43%), Gaps = 4/293 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              WD  R F  V R GS + AA +L ++Q +  R I  LE  VG  LF R   GL  TE
Sbjct: 6   DVSWDFYRTFLSVLRDGSLSAAARELGITQPTAGRHIGALEEAVGFPLFIRSPHGLMPTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +                K  G +RI+ +  +G  +L   +     ++P 
Sbjct: 66  AALALRPYAENLAATAAALMRAASGEVGKIEGTVRISASDIIGVEMLPPIVALMQEVHPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L L +   D+    AD AIR+ +P Q + ++ R +    +  +A   YL     P 
Sbjct: 126 LEIELSLSDTLEDLLRREADIAIRMTEPQQDA-IVMRYIGNFRLGFHATRDYLAKAGIPK 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++EL++H ++ F    P        + ++  D P  E     ++ +S L+ +      +
Sbjct: 185 AMEELNEHRMVGFDRKTPFIRAAIQRMRSLDPDIPDIEDISFEIRADSNLAQLAMIRASA 244

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI +    + + +P LV ++ D+  P    +    E LK + + +A  + +  
Sbjct: 245 GIGVCQIGLARKDPRLVHVLPDIDIP-LHTWVAMHENLKTSPRCRAVFSALVE 296


>gi|117922127|ref|YP_871319.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614459|gb|ABK49913.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 303

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 129/299 (43%), Gaps = 8/299 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L++   +A   S + A++++ ++ ++ S  +  LE ++G +LF R  R L LTE+G 
Sbjct: 4   INDLQLALRIAALESLSAASKEVGMTPAAASAALQRLEKKLGCQLFARSTRRLQLTEEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LET    L E   +  G++RIA   D+G++ ++  L E +   PD+ I
Sbjct: 64  IFLDTAKPALALLETASANLAEHRGELKGEVRIALPSDIGRSRIRNWLDELMDSAPDLSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL   +   D+       A+R  + ++ S+L +R+L        A+P YL    EP ++ 
Sbjct: 124 QLYFGDHMADLIDQNIHLALRYGQ-LEDSNLKRRQLSMTPRVLVASPAYLAQHGEPQTLN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIAL 243
           EL +H ++              W  + +    E  +   +  N    +  + + G GIA 
Sbjct: 183 ELSQHQVLILN---RGGEPWQKWKFSHNGEAVEIEVRGKRFCNDGAVVRDWALAGRGIAY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
                V  +     L  I+ D + P+  +   Y +    + K++    F+  K + +  
Sbjct: 240 KSWLDVAQDVTEGRLKLILADKLAPAVPLQLVYLQTDYPSHKIRRTIEFLAHKLQQFSL 298


>gi|307544995|ref|YP_003897474.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307217019|emb|CBV42289.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 302

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 124/293 (42%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L+ F   AR  SFT A  +L+L+QS++SRQI  LE ++G  LF R   GL  T    
Sbjct: 10  LQCLKAFEATARHCSFTQAGRELNLTQSAVSRQIKRLEEDLGRPLFERVPDGLRPTPAAD 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +RV   +    +      +        +L +AT+  +    L  +L EF   +P I+I
Sbjct: 70  HYYRVVRRL--LRDLADETARLRRHGDDHQLTLATSPTIASIWLSRHLPEFQRQHPHIEI 127

Query: 125 QLILDNKDIDISMDYADCAI--RLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPL 181
           +L+       + +   D  +   L   +    L+   +     + A  +PHY ++  E  
Sbjct: 128 RLLTMEDPYRLDLTEFDLGLYYHLEGQVDPPGLMAETVFDEENVIAVCSPHYTRHHGEVG 187

Query: 182 SIQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + +  L +H L+   D     +   +W   ++    EP   CL+ NSY  ++   + G G
Sbjct: 188 TPEALLRQHTLLVLEDHFNDWLTWQDWFKALELTWHEP-THCLRANSYQVLLNATLAGQG 246

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I L  + ++ D     +L+R +   +     +    P+    T   + F+ ++
Sbjct: 247 IILGWEQLLADELRQGHLLRALPQALPSLGKLSLLIPQHRHLTQASRTFQRWL 299


>gi|167589223|ref|ZP_02381611.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 322

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +   G   LT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEEAMGTLLFDKSRSGGFVLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L +F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVANTGHALSGHVRIGSTEGFGCFFLAPQLAQFRAAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     + ++   AD AI L +P +    +  KL    +  YA   YL +    
Sbjct: 131 HVTVDLLPVPHFVSLTKREADLAITLERP-ERGPYVCTKLCDYQLRLYATRAYLASHPPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L  H  I++ D +    E       V         + L+  S ++     + G G
Sbjct: 190 AGVGDLAAHTFISYVDDLAFSSELLYLERAVPGAA-----AGLRTTSVIAQYFAALQGGG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+LP +I    P LV ++ D +  +   +    E L+   ++ A  +++   A
Sbjct: 245 LAILPCFIAAQQPALVPVLADEVVVTRCFWLTCREDLRKLRRVTALWDYLRAAA 298


>gi|157377196|ref|YP_001475796.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319570|gb|ABV38668.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 304

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 125/298 (41%), Gaps = 8/298 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L++   +A   S + A  +L ++ ++ S  +  LE ++   LF R  R + LTE+G 
Sbjct: 4   LKDLQLAIRIADLQSVSAAGRELGMTPAAASAALQRLERKLNCLLFARSTRKMKLTEEGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +    L+     L ++  +  G++RIA   DLG+N+ +  L EF    P I++
Sbjct: 64  LFIETGRKALQLLDGASNALADNRGELKGEIRIALPSDLGRNIAREWLDEFAHSAPGIKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++  D+       A+R    ++ S+L++R+L  +   A A+P Y++    P   +
Sbjct: 124 SLFIGDQMADLIDQNVHLALRYGH-LEDSNLMRRQLAMMPRVAVASPEYIEQHGLPTHPK 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H ++              WL     R            N    I  + + G GIA 
Sbjct: 183 ELTNHKILLLN---RGGEPWHKWLFNHKGRQYEVEVKGERSCNDGAIIKDWALAGEGIAY 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              + V     +  L  +  D +  S  +   Y +    + K++   +F+  K++ ++
Sbjct: 240 KSWFDVAKEVHDGQLSVLFGDQLAESIPLQLVYLQTDYPSHKVRTVIDFLKQKSQAFE 297


>gi|255591949|ref|XP_002535633.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
 gi|223522451|gb|EEF26751.1| HTH-type transcriptional regulator ptxR, putative [Ricinus
           communis]
          Length = 289

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 125/290 (43%), Gaps = 12/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  +  SGS T A  +L ++   +S+ ++ LE  +  +L  R +R ++LTE G   H
Sbjct: 3   LRVFCEIVESGSLTAAGNRLGMAPPMVSKHLARLERSLAARLLNRTSRSMSLTEAGRLFH 62

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L+     + ++S  P G+L+I+  + +        + E+    P++++ + 
Sbjct: 63  EQAMQALEMLDAGVASVSQASGPPRGELKISAPVWIATPRFAALIAEYQQRCPEVRLDVH 122

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L+N+ +DI  +  D A+R+ K   S SLI RKL  +  +  A P +L             
Sbjct: 123 LENRMVDIVAEGFDLALRM-KNDASQSLISRKLCEVQFYCVATPAFLARSATKSEAGAAQ 181

Query: 188 KHNLITFGDLI--PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
              +I   +L      M         D+P+       ++ N         + G G A LP
Sbjct: 182 LPAMIMPNNLQFGRPKMPAQGMFLAPDQPV------AMRSNDTTLSYHAVLAGIGAAFLP 235

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++V D+     LV   E   +    ++  YP       KL++F +F+  
Sbjct: 236 GWLVADDLASGRLVHSGEADKSYQGQLFAVYPSRRHQALKLRSFIDFLVE 285


>gi|170680003|ref|YP_001745068.1| LysR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|218706419|ref|YP_002413938.1| hypothetical protein ECUMN_3256 [Escherichia coli UMN026]
 gi|293406413|ref|ZP_06650339.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298382149|ref|ZP_06991746.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300896189|ref|ZP_07114738.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
 gi|170517721|gb|ACB15899.1| transcriptional regulator, LysR family [Escherichia coli SMS-3-5]
 gi|218433516|emb|CAR14419.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|291426419|gb|EFE99451.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298277289|gb|EFI18805.1| transcriptional regulator [Escherichia coli FVEC1302]
 gi|300359923|gb|EFJ75793.1| LysR substrate binding domain protein [Escherichia coli MS 198-1]
          Length = 298

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 129/290 (44%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+    F ++A  GS++ AA +  +S+S +SR+++ LE  +G++L  R  R L LT  
Sbjct: 2   IDWNDYYYFALIADEGSYSQAALRAGVSKSVLSRRMAALEERLGVRLIQRTTRRLALTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  + E  +  +  +   P G LR++  + + +      + EF+  +P  
Sbjct: 62  GEQFAVECRALVAQGERARAVVMAAQESPQGMLRVSAPVFMAETWFGEFVSEFIARWPLA 121

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++QL+  N+ +D+  +  D A +     +  S+L  +KL T      A+  +L    +  
Sbjct: 122 KVQLLAINRPVDMVAEGIDIALVTASGALADSTLHYKKLHTQADILVASSQWLARHPQVK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L++ + I     +         L   D+ I     + LQ N+   ++Q  + G+G+
Sbjct: 182 AIDDLNRVDGIL---RLTNNGGSQWQLMNGDQEITLHPEARLQTNNIRVMLQAVLGGNGV 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           ALLP +  K    N  LVR+          +Y  +          + F +
Sbjct: 239 ALLPQFACKQGLANGELVRLFAPWSGIPRPLYALFAGRKGMPAIARYFMD 288


>gi|254375230|ref|ZP_04990710.1| hypothetical protein FTDG_01421 [Francisella novicida GA99-3548]
 gi|151572948|gb|EDN38602.1| hypothetical protein FTDG_01421 [Francisella novicida GA99-3548]
          Length = 298

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +        FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT 
Sbjct: 6   NISISLFEAFYQLVIHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTH 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      + ++++  +   +    +PSG L+I+T+    QN+L   +KE+   +  
Sbjct: 66  EGMLLFNYCKTLQNEIDNIRDLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ ++ K  +   + AD  + +        ++ RK+ T      A+P Y+     P 
Sbjct: 126 VKIEVSIEEKMPNFKSNEADIILGVNW-TPPEDIVARKIATTRYVLCASPAYINKNGSPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L  HN I     +   +         ++   E   S +  N+   I    +   GI
Sbjct: 185 NISDLANHNYIPHKSRVTLLVN-----IKKNKLNPETLPSNISANNIEFIKACVLNDFGI 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A   +YIVKD   N  L+ +++D       +Y  YP+      K+K F N + 
Sbjct: 240 AQFHEYIVKDEIRNGQLIELLKDDFFDQQDIYIYYPKNKFVQPKVKEFVNLVI 292


>gi|220925824|ref|YP_002501126.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219950431|gb|ACL60823.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 296

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 130/294 (44%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            WD  R    V   GS + AA  L L+Q +I RQI+ LE  +G+ LF R   GLT TE G
Sbjct: 5   SWDHCRAALAVLEEGSLSAAARALGLTQPTIGRQIAALEETLGVVLFTRSQAGLTPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +       +  +  +    +G +RI  +  +G  +L   L      +P + 
Sbjct: 65  LALRPYAEALRATASALERAVTAAGEGVAGTVRITASEVVGGEVLPPILARLHEAHPALT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L ++  D+    AD A+R+  P+Q++ L+ RK+ ++ +  +A   YL     P + 
Sbjct: 125 LELVLSDRVQDLLRRDADIAVRMTAPLQAA-LLARKVGSVRLGLHAHRRYLDRRGTPAAA 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+LI F          F     ++    +  +   + +S L+ +     G GI +
Sbjct: 184 ADLPRHSLIGFD-----AETAFLRSMRIEGVDFDRALFAWRSDSALAQLAAIRAGFGIGV 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               +   NP+LV ++ ++       +    E L++  + +   + +     D+
Sbjct: 239 CQAALAARNPDLVPVLPEIR-WDLPTWIVMHEDLRHLRRYRVAFDALAEGLTDY 291


>gi|56695133|ref|YP_165480.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56676870|gb|AAV93536.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 298

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 136/288 (47%), Gaps = 12/288 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++ F  VA +GS + AA QL  SQ ++ R +  LE  +G+ LF RHARGL L+  G
Sbjct: 9   DWSLIQSFLAVAETGSLSAAARQLDRSQPTLGRHVQALEQALGLSLFDRHARGLKLSADG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +++  +  + +  +    +     S   +G +RI  ++    ++L   L +     P I+
Sbjct: 69  ARILPLAQQAHRAMTAISVTAAGQSQSLAGTVRITASVFASHHILPPILADIRAAEPAIE 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+  +   ++    AD A+R+ +P Q   ++ R +  + + A AA  YL+    P   
Sbjct: 129 LELVPSDTTENLLFRAADIAVRMYRPRQVD-IVARHIGDVPLCACAATSYLERKGRPTRA 187

Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++L   +L+ +    +I K M+   W  T            ++ ++  +  Q    G GI
Sbjct: 188 EDLLDFDLVGYDADPIIVKTMQALGWPVTRH-------SFAMRCDNQSAYWQLIRAGCGI 240

Query: 242 ALLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRN 288
                 IV  +P LV ++  ++  P   ++   P+A++ T +++   +
Sbjct: 241 GFGQRSIVAADP-LVEVLPFELPVPPLEMWLAAPQAMRLTPRIRRVWD 287


>gi|88859475|ref|ZP_01134115.1| putative transcriptional regulator of the LysR family protein
           [Pseudoalteromonas tunicata D2]
 gi|88818492|gb|EAR28307.1| putative transcriptional regulator of the LysR family protein
           [Pseudoalteromonas tunicata D2]
          Length = 311

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 6/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L++   VA   S T AA +L +  ++ S  I  +ETE+G +LF R  R L L+  
Sbjct: 1   MQIEDLKLILKVAEFRSITLAAAKLDMRIATASAAIKRVETELGTELFVRTTRHLRLSSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    LE  +  L+    +  G+LRIA + DLG+NL+   + E +  YP +
Sbjct: 61  GERYIPQCEQALLVLEQARQNLKGEHDEIEGELRIALSSDLGRNLVIPWIDEIMDSYPKV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++  + + +ID   D  D A+R   P   +S+   K+  +     A+  YL     P  
Sbjct: 121 SLRTHISDSNIDFYRDSVDIALRYGSP-SDASMYGFKIGQVPRLLCASQAYLDQHGYPTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  + +   +   + +       +             N    + ++CV G G+A
Sbjct: 180 PDDLSRHQGLFY--QLQDIINNVWEFTDGESKFKVKMDGRRASNDGDLVRRWCVAGKGVA 237

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +     + ++     +V +M D    S  ++   P     T  ++  R+
Sbjct: 238 VKSALDIAEDLLNDKVVALMPDYPHISAELWLICPSRQSITPAVRLLRD 286


>gi|331011124|gb|EGH91180.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 294

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 119/290 (41%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  G 
Sbjct: 4   IEDLRLAVALSRCESLSAAARVLNVSPPALSMRLRKLETQLGITLANRDARRLSLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  + ++ +  +LE      ++   +  G LR+A     G+  +   L  F  L+P + +
Sbjct: 64  RFAQESAHLLEQLEALPESFKQHDERLVGTLRLAAPFGYGRQRIAPLLARFAKLHPQLCL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L           +D  I +   +  S  I R L   H    A+P YL+    P +  
Sbjct: 124 HLDLRETPW-PDRHDSDAVIHIGS-LNDSLWIARPLAHNHRWLCASPAYLEQHGVPSTPD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           EL  H  I   +          W  +  +     RI   L  N      ++   G GI L
Sbjct: 182 ELACHRCICIRENDEDVTL---WHLSKGQAKKTLRIEPALLSNDGSVARRWAEQGLGIVL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                V D   +  LVR++ D    S  +    P     + +++A   F+
Sbjct: 239 RSQGDVSDAIASGRLVRVLADWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|293602844|ref|ZP_06685283.1| glycine cleavage system transcriptional activator [Achromobacter
           piechaudii ATCC 43553]
 gi|292818638|gb|EFF77680.1| glycine cleavage system transcriptional activator [Achromobacter
           piechaudii ATCC 43553]
          Length = 349

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 126/293 (43%), Gaps = 12/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF+ AA++L ++QS+IS  I  LE E+G+ LF R  R + LT +G    
Sbjct: 54  LRAFEAAARRLSFSLAAQELFVTQSAISHHIQRLERELGVALFERRTRAVALTPEGLAYF 113

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +     +  L     +L+ S   P   L++          L   L  F   +P+I +QL+
Sbjct: 114 QHVHPAFELLRQGTDQLRAS-AAPRVTLKVGLLASFATRWLAPRLPAFAAAHPEIDLQLL 172

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D++    D AIR  +      +  R L+T H+    AP  +   + P +  +L 
Sbjct: 173 PDIGLADVAGGDVDVAIRYGRG-SWPGVASRLLMTEHLSVVGAPGLVSGRKRPRTPDDLL 231

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H L+T     P   E   W       +G  R   + ++ Y  +++  + G G+A+    
Sbjct: 232 RHPLLTSHARQP--FEWDAWARQFGMDLG--RAQNVHLHDYNIVVEAALAGQGLAMGRHR 287

Query: 248 IVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++     +  LV+ +   +   P    +F  P       +  A R+++   AR
Sbjct: 288 LIASHLASGALVQALPGAVLKDPRIGWWFVAPRG-ALPPQAAALRDWLTEAAR 339


>gi|118591289|ref|ZP_01548687.1| LysR family transcriptional regulatory protein [Stappia aggregata
           IAM 12614]
 gi|118435961|gb|EAV42604.1| LysR family transcriptional regulatory protein [Stappia aggregata
           IAM 12614]
          Length = 301

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 128/298 (42%), Gaps = 10/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L+   +V   GS   AA  L L  S++SR +S +E E+G +LF R  R L+LTE 
Sbjct: 1   MDLQALKTILLVRDLGSLAAAARALDLDASNVSRTVSSVERELGQRLFQRSTRKLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    +  + +  ++E    ++   S +P G LR+  ++      +   L +F  LYPDI
Sbjct: 61  GEAYLQRVAPLVEEIEAANEDIAARSRQPRGILRMTASVAFVLEGIVPLLPKFQELYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L   + ++D+  +  D AIRL        LI  KL+       A+P YL     P +
Sbjct: 121 SIELFPSDSNLDLLAEGLDLAIRLAAA-PKGDLISTKLLQTRYRVVASPGYLSGEGHPEA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L   N + F   +P     + +    D P          + S L++ +   LG G A
Sbjct: 180 PGDLSVRNCLCFA--LPDFRNAWRFRLGDDAPFDVDVSGRTTIASALALREAARLGLGPA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFLK 293
           LL D+++ ++     LV +               +  YP       K++   +F+  +
Sbjct: 238 LLADWLIGNDLKEGKLVDLFPAYACAPANFETAAWILYPSRAYLPLKVRVMIDFLKAE 295


>gi|114562611|ref|YP_750124.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333904|gb|ABI71286.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 328

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 135/297 (45%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++   + + +F+ +  +GS   AA  L+L +S++SR++  LE  + +KLF+R +R +TLT
Sbjct: 19  INMKTEDIALFHRIVETGSILEAANLLNLPKSTVSRRLQSLEESLNLKLFHRQSRAITLT 78

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             GS  +  T  +   L+ T  ++ ++  + +G LRI          +   +  F+   P
Sbjct: 79  SAGSHFYEKTLVMLADLDRTLSDITDNKAELTGHLRILIFPIPQIMDIVSKIFAFMDENP 138

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +  I++I   + +D+  +  D A  + +      ++ + +++  M  +A+P YL     P
Sbjct: 139 NCSIEIITSTEPLDMVRNNIDIAFMVNETFSELDMVAKPVISEDMCFFASPEYLTKAGMP 198

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +++ ++++HN I F     K   +        + +       L  NS     +   LG G
Sbjct: 199 VTLSDIEQHNSILFRFPNGKTFSEVPLANDAMQAVK----GNLCTNSIQLAYEATKLGRG 254

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  LP  +  D+     LVR+  D+   +  V+  YP     +   +   +++  + 
Sbjct: 255 IGYLPQKLCHDDVEQGELVRLFNDLAPYTGVVFLVYPSRRFLSLTGQRLLDYMLAQL 311


>gi|150398348|ref|YP_001328815.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029863|gb|ABR61980.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 297

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 125/294 (42%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE+++G+ LF R  + + L++ G
Sbjct: 10  DVTTLQAFECAARHGSFTQAAAELNLTQSAVSRQIKDLESQLGVLLFERVRQRVILSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E   +    S+   S  L IA+    G   L   L +FL  +P   
Sbjct: 70  QKFLPEVRRLLNQTEELMVRAMASARADS-SLSIASLPTFGSRWLVQRLPDFLKRHPGTV 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++  D      D AI   +P+ + ++    L +  +   A+P  L       S 
Sbjct: 129 VNIASRSEPFDFEEQNFDLAIHYGQPVWARAICSY-LCSEVIVPAASPALLAVHPV-ASP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ++    L+    L  +      W  T D           + + +  +++    G G AL
Sbjct: 187 ADIGGSPLLH---LATRPKLWAQWFETNDVEQDGAYRGN-RFDQFSMVIEAATAGLGFAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++       L  +++  +    + Y   PE        +AFR +I  + 
Sbjct: 243 LPRYLIEQELTAGTLRIVLDRPMQTENSYYLAIPEGKLENPISRAFREWITEQV 296


>gi|319944881|ref|ZP_08019143.1| LysR family transcriptional regulator [Lautropia mirabilis ATCC
           51599]
 gi|319741451|gb|EFV93876.1| LysR family transcriptional regulator [Lautropia mirabilis ATCC
           51599]
          Length = 306

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 120/300 (40%), Gaps = 11/300 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +D+  + +F  V +  S   AA QL L+ S++S  IS LE + GI+L +R  R L+ T  
Sbjct: 13  YDFRAMAIFVEVIKHQSMQQAARQLGLTVSTVSLAISRLEQQHGIRLLHRTTRRLSATSA 72

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    +    E     L++   +  G LRIAT   +    L  +LK  L  YP +
Sbjct: 73  GEAFYQACLRMLEGAEQAHRVLEQQKHEIEGTLRIATFSSVCGLPLGDSLKALLERYPAL 132

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            I+  +D+   ++     D AIR     +    LI RKL    M   A P YL N     
Sbjct: 133 NIEWYVDDSFSNLYRQQIDIAIRGGMHALNDPQLIARKLFDAEMVLCATPEYLANRPPIE 192

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H  + +         D+         I       +  N+ L   +  +   GI
Sbjct: 193 RPQDLYTHQWLDY------QQPDYRLTHPEHGEIHLAPRLRMLCNNSLLSKELLLNHFGI 246

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +      ++      LV+++ D    S  +Y       +   +++A R  +     +++
Sbjct: 247 GVRARAEFREEFAQGRLVQLLPDWHLESRPIYLVTL-NREQPARVRAAREALSAALMEYR 305


>gi|222080879|ref|YP_002540242.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725558|gb|ACM28647.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 314

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 8/295 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF   AR  SFT AAE+L++SQ ++S+ I  LE   G+KLF R    L LT +G +
Sbjct: 12  NYLFVFEAAARRRSFTAAAEELNVSQPAVSKTIKLLEEATGLKLFRREHTRLELTAEGQR 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+R T + +  L      L+         +R++ +    Q  L   LK+F + +PDI ++
Sbjct: 72  LYRETQQAFDHLHMVLTSLRTKHSND--TVRVSFSTSFVQLWLLPRLKDFKVKHPDIALR 129

Query: 126 LILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +   ++ D D++ +  D + RL    +   +     VT  +       YL+         
Sbjct: 130 IEESSRDDQDLNEEDIDISARLGAG-KWPGIHAWHFVTEEVIPVCNADYLREHGPINVPA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+ F +     +   +WL     P+             LS ++  VLG GIAL 
Sbjct: 189 DLLNHRLLHFEERHRVRLGWRDWLLHHSVPVAR-LAQDFVFTDALSSIEAAVLGQGIALG 247

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             ++V D+     LV  ++ V     ++Y   P           FR+++  +  D
Sbjct: 248 WKHLVHDHVQAGRLVYPLDAVHRSGQSIYLVMPAQRPAKHGAMLFRDWLLEQDAD 302


>gi|160898330|ref|YP_001563912.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363914|gb|ABX35527.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 300

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 115/294 (39%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +  V   G F  A   L + +S +SR+I+ LE  +G +L  R  R   +TE G
Sbjct: 3   DLNDLYYYVQVVDHGGFAPAGRALGMPKSKLSRRIAQLEERLGTRLIQRSTRRFAVTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +  +  +P G +R+   + L    +   L  F+  YP ++
Sbjct: 63  QTYYGHCKAMLVEADAADEAIALTHAEPRGIVRMTCPVALLDARIADMLAAFMAAYPRVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S L+ R L        A P  L     P  
Sbjct: 123 IHLEETNRRVDVVGEGIDVAIRVRPPPLEDSDLVMRMLAERGQCLVACPRLL-TGGIPQV 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L      +    +P+    ++ +              L     L++    + G G+ 
Sbjct: 182 PADLAGLP--SMDLGLPQHEHVWHLIGPDGTQAAIRHRPRLVTRGMLALRAAALAGVGVV 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V++      LV ++         ++  +         ++A  +F+  +
Sbjct: 240 QLPSMMVREQIARGELVHVIPGWAPRREIIHAVFASRRGLLPAVRALLDFLAER 293


>gi|330830021|ref|YP_004392973.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328805157|gb|AEB50356.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 312

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 119/291 (40%), Gaps = 13/291 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++  +F  V + G F+HAA  L +   +ISR+IS LE ++G  L +R  R L LT+ G 
Sbjct: 4   IEEFYLFVKVVQEGGFSHAAAALGMPTGTISRRISQLEEQLGCSLLHRSTRKLRLTDDGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +        ++E    E+Q      +G +RIA  I L   +L   L EF L YP++Q 
Sbjct: 64  RYYERLCTPLAQIEQATSEIQGQEADITGLIRIAAPIALSNTILIDMLAEFGLHYPEVQF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   N    +  +  D        +  S      L  I    +A+P YL     P    
Sbjct: 124 DITQTNDHQHLFDNDRDLVF-FNGELPQSLPNAICLGHIEYGLFASPLYLTKKGTPSHPN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA-- 242
           +L++H+LI          + +       + +   R + L VN   + ++      GI   
Sbjct: 183 QLEEHDLI-----YCWPHQHWQLTDKDGQSVCIKRSAKLTVNQTQAAVRAARRHLGIVNA 237

Query: 243 ---LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               L  ++   +  LV ++ D  T +   Y    +      ++K F  F+
Sbjct: 238 PLHYLSSFL--HDEQLVPVLTDWQTGNRPFYMLCCQHQFAPLRVKMFVEFV 286


>gi|15641402|ref|NP_231034.1| LysR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121590813|ref|ZP_01678140.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121727524|ref|ZP_01680636.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|147673870|ref|YP_001216948.1| LysR family transcriptional regulator [Vibrio cholerae O395]
 gi|153817736|ref|ZP_01970403.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|153821343|ref|ZP_01974010.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|227081561|ref|YP_002810112.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|229505033|ref|ZP_04394543.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229511297|ref|ZP_04400776.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229518415|ref|ZP_04407859.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229608037|ref|YP_002878685.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254848509|ref|ZP_05237859.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255745771|ref|ZP_05419719.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262158949|ref|ZP_06030061.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1]
 gi|262169312|ref|ZP_06037004.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
 gi|298498530|ref|ZP_07008337.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9655886|gb|AAF94548.1| transcriptional regulator, LysR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121547339|gb|EAX57456.1| transcriptional regulator, LysR family [Vibrio cholerae 2740-80]
 gi|121630108|gb|EAX62511.1| transcriptional regulator, LysR family [Vibrio cholerae V52]
 gi|126511674|gb|EAZ74268.1| transcriptional regulator, LysR family [Vibrio cholerae NCTC 8457]
 gi|126521161|gb|EAZ78384.1| transcriptional regulator, LysR family [Vibrio cholerae B33]
 gi|146315753|gb|ABQ20292.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|227009449|gb|ACP05661.1| transcriptional regulator, LysR family [Vibrio cholerae M66-2]
 gi|227013305|gb|ACP09515.1| transcriptional regulator, LysR family [Vibrio cholerae O395]
 gi|229345130|gb|EEO10104.1| transcriptional regulator LysR family [Vibrio cholerae RC9]
 gi|229351262|gb|EEO16203.1| transcriptional regulator LysR family [Vibrio cholerae B33]
 gi|229357256|gb|EEO22173.1| transcriptional regulator LysR family [Vibrio cholerae BX 330286]
 gi|229370692|gb|ACQ61115.1| transcriptional regulator LysR family [Vibrio cholerae MJ-1236]
 gi|254844214|gb|EET22628.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736846|gb|EET92243.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262022125|gb|EEY40834.1| transcriptional regulator LysR family [Vibrio cholerae RC27]
 gi|262029134|gb|EEY47786.1| transcriptional regulator LysR family [Vibrio cholerae INDRE 91/1]
 gi|297542863|gb|EFH78913.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 316

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 135/298 (45%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +    D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R+++ L LT
Sbjct: 10  LPMKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L    +E++ ++E  Q E++++     G++ I+  +   ++ L     EF  L+P
Sbjct: 70  KEGEQLFHSYAELFAQIERKQEEVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-- 178
           ++ +++ + +     S    D A+R   P   S  + RKL        A+          
Sbjct: 130 NVTLRMQVGSGLDYFSQRDLDIALRFG-PQPESDWVARKLARNPSVLCASAELAAKLSTV 188

Query: 179 --EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                  ++L +H L++    +P          +V + +     + L  +   +I+Q  +
Sbjct: 189 TLTLAHPEQLKEHPLLSLNHKLPWIFHHH----SVAQKVQFIPTARLCSDELDTIVQATL 244

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G GIA LP  +++    +  L+ ++ +       VY  +P+      + +A  ++I 
Sbjct: 245 QGMGIARLPRGLMEPLLRSGQLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDYIM 302


>gi|294667811|ref|ZP_06733021.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602437|gb|EFF45878.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 331

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 121/288 (42%), Gaps = 9/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  +A   SF   A  L +S ++++R I+ LET +G+ L  R  R +  T  G 
Sbjct: 33  IQEMTLFAALAEHTSFAGVARHLGISTATVTRTIAQLETRLGVLLVVRSTRTMRFTAAGQ 92

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  +LE  +         PSG L +      G   +   L  FL  YP ++ 
Sbjct: 93  QYASDCRRLLAELEDVESRAAGLHTLPSGLLTVTAPQMFGALHVTPVLTHFLSRYPAMRA 152

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++ + +     D AIR+   +  S+L    + ++     A+P YL     P    
Sbjct: 153 RALLVDRVVPLLEKGIDVAIRIG-TLPDSTLTAIPVGSVRRMVCASPGYLAEHGIPQHPD 211

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
            L +H  I+             W   +D    E  + S L V+++ + +   V G G+  
Sbjct: 212 MLRQHATIS----TAAAERAPKWAFRLDGRAHEVDVASRLSVSAFNAAIVAAVDGWGLTQ 267

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +P Y V+++     LV +++        V+  Y E  + + K++ F +
Sbjct: 268 VPSYQVREHLQNGTLVSVLDAFEIAPEPVHVVYVEGRRGSSKVRTFVD 315


>gi|238562991|ref|ZP_00439552.2| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|238521530|gb|EEP84981.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
          Length = 293

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 13/287 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  V  +GSFT AA  L+ +++++S  +  LE E+G+ L  R  R + LTE G
Sbjct: 9   SLDRFDVFRAVVEAGSFTGAANVLNQARAAVSFHVKQLEAELGVTLLTRTTRRVELTEAG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + E    + +       G LR+ +T++    ++   L EF+  +P ++
Sbjct: 69  ERFYERCLRVLAEAEEAIDDARAEHGGMQGSLRVTSTVEYALRIVAPALSEFMSAHPALR 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAPHYLKNCR--E 179
           ++L       D+  D  D AIRL +  Q   L  R +   T  +   A+P  L       
Sbjct: 129 VRLETHTSQADLVRDRFDVAIRLGRLEQFRDLPYRGVCIDTYDVRPVASPALLAAHGVAR 188

Query: 180 PLSIQELDKHNLITFGDL---IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             S + L +   +    L       + D +    V RP  +P    L  ++   +  +  
Sbjct: 189 IDSPEALARLPQLGHSRLSQVASWLLHDRDGREHVYRPAAKPH---LIADNASVLRAFAQ 245

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT 280
            G G+ALLP+++V+D+     L+  +         VY  YP A    
Sbjct: 246 QGGGVALLPEWLVRDDLASGTLIDALPGYRFAQQGVYALYPSARHVP 292


>gi|254437565|ref|ZP_05051059.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198253011|gb|EDY77325.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 296

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 131/295 (44%), Gaps = 6/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW+K R F V A  GS + AA  L ++Q ++ RQ+ GLE E+GI LF R  RGLTLT
Sbjct: 6   IKFDWNKARAFLVTAEEGSLSAAARALGMAQPTLGRQVDGLEQELGIVLFERVGRGLTLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L     ++        +     S    G + I+ +      LL   + +  ++ P
Sbjct: 66  PSGLELLDHVRDMGEAAGRVSLTALGQSQALEGTICISASETYAAVLLPPIIAKLRIMEP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQ+++++ N   D+    AD AIR  +P +   LI +K+       YA P Y+     P
Sbjct: 126 AIQVEIVVANHASDLRRREADIAIRNFRPTE-PDLIAKKIGDADAILYATPDYIGKIGNP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L   + +               L T+   + E     L   SYL + +    G+ 
Sbjct: 185 TKPYDLRHADFVNMD----HGGMMLKGLNTLGLGLTEANFPLL-TESYLVMWELVRQGAA 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I +L  +I   +P + R++ D+    F ++      L  + +++   +F+  + +
Sbjct: 240 IGVLDAHIGDADPIVRRVLPDLEPLVFPIWLVAHRELSTSRRIRRVYDFLADELK 294


>gi|330818422|ref|YP_004362127.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327370815|gb|AEA62171.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 301

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ ++AA +L +S++++S +++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVEILDAGNLSNAARRLKMSRANVSYRLNQLEKSVGLQLVRRTTRRIEPTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             +L      + H+L   Q  +        G++R++     GQ ++   L  F   YP I
Sbjct: 61  ALRLVEHGRRIQHELLAAQETVATLGQALQGRVRLSVPSGYGQIVMSDWLLAFKRDYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P +
Sbjct: 121 VLDVVFENRVEDLLRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPEFAARHGMPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L    LIT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LDALADSPLIT-ATVVGRQLRIAAYLDGDRHEVLL--APTLISENFLFLRQAVLAGLGVG 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVY-----FCYPEALKNTGKLKAFRNFIFLKAR 295
           ++PDY+++D+     ++  +     +++       Y     +T     F +FI  +AR
Sbjct: 237 IVPDYVIQDDLRRGAVVTTLDAYRLSIFGTRMAMLYMPNRHHTRATATFIDFILEQAR 294


>gi|290509496|ref|ZP_06548867.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289778890|gb|EFD86887.1| LysR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 301

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 127/305 (41%), Gaps = 16/305 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +R+F  V   GS + AA  L + Q ++S +I  LE  +G +L  R+ R ++LT
Sbjct: 1   MDL-FSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+  +  +       E      +E+     GK+RIA     G++LL   L +    +P
Sbjct: 60  HSGNVFYERSKTAVQAAEHALSVNEENQG-LQGKIRIAAPYSAGESLLMPALLQLQNEHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q+ +I +++ ID   +  D ++RL   +     + R L  +     A+P  L     P
Sbjct: 119 ELQVDVIFNDRVIDPVTEGVDLSLRLGD-VSEGFFVARPLGAVRRVLVASPALLAKMGHP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + + +  +       +          +A+ D+ I  P     Q   + S++ + + G  
Sbjct: 178 DTPEAMTDYPFAAVSGVF--ASNRIQLIASEDQLINVPVNIQFQSTHWRSVLSWLLAGHA 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA--------FRNF 289
           I +L   + +    +  L+ I+     P F+ +  +P A   + + +          R+ 
Sbjct: 236 IGVLQSPVCRKEMADGALIPILSHYPIPPFSAWLLHPPAGMMSYETRICASLLEGYLRDL 295

Query: 290 IFLKA 294
           +   A
Sbjct: 296 LLEPA 300


>gi|307728674|ref|YP_003905898.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583209|gb|ADN56607.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 298

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 10/291 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ LR F  VAR+GS + AA  L +  S++SR+IS LE  + + LF R   G +LT +
Sbjct: 1   MDWNDLRYFLCVARTGSLSKAAGDLGVGVSTVSRRISELEASLRVTLFTRSPTGYSLTRE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      V   +   +      + +PSG +R+AT+ ++  +L+   L +F   YP I
Sbjct: 61  GERVLEGAEMVEAGVFAVERSAYGLAEQPSGTVRLATSENIATDLVIPALPQFREQYPLI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++++      ++    AD A+R+ +P    +L  R+L  +    Y    YL+    P +
Sbjct: 121 RLEIVTSTLTAELDTQEADIALRMVRP-NRGNLKVRRLGRMTYSVYGRRDYLQAH--PAT 177

Query: 183 IQE-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L   + I + D     +    W A             L  +S  + +     G G+
Sbjct: 178 DGDPLKGRSFIAW-DGAHAHLPAAVWAAER----IPDSDIALVTSSLPTQIAAVRAGLGL 232

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A++PD++V ++ +LV+++  V   S  V+      + ++ ++KA  +F+  
Sbjct: 233 AIIPDFLVAND-DLVQVLPPVRVFSNHVWLVVHPDISSSARVKAVSDFLAE 282


>gi|239834742|ref|ZP_04683070.1| DNA-binding transcriptional activator GcvA [Ochrobactrum
           intermedium LMG 3301]
 gi|239822805|gb|EEQ94374.1| DNA-binding transcriptional activator GcvA [Ochrobactrum
           intermedium LMG 3301]
          Length = 307

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 130/299 (43%), Gaps = 10/299 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L VF   AR  SFT AAE+L++SQ ++S+ I  LE   G+KLF R    L LT +G +
Sbjct: 12  NYLFVFEAAARRLSFTAAAEELNVSQPAVSKTIKLLEEATGLKLFRRERSRLELTAEGQR 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+R T E +  L      +++   +    +R++ +    Q  L   LK F   +PD+ ++
Sbjct: 72  LYRETQEAFDHLHMVISSMRKKHSRDI--IRVSFSASFVQLWLLPRLKGFKEKHPDVALR 129

Query: 126 LILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +   ++ D D+  +  D + RL +  +   ++    VT  +    +P YLK         
Sbjct: 130 IEESSRDDQDLLEEDIDVSARLGRG-KWPGILAWPFVTEEVWPLCSPAYLKERGAIREAS 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           +L  H L+ F +     +    WL     P   PRI         LS ++  V G G+AL
Sbjct: 189 DLLNHTLLHFEERHRSRLGWREWLERSGVP--NPRIEQDFVFTDALSSIEAAVQGQGVAL 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
              ++V D+     LV           T++   P         + FR ++  +  D + 
Sbjct: 247 GWKHLVHDHVVAGRLVPATHMCHRSGDTIHLVMPAQRPPKRGAELFREWLLEQGADAEL 305


>gi|260556672|ref|ZP_05828890.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260409931|gb|EEX03231.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 309

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 125/292 (42%), Gaps = 7/292 (2%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMDVILLHRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  +I + E      G LRIATT DL    +   L  ++  +  
Sbjct: 62  AGQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHIIPALSHWMSAHRG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +   + ++ ID+  +  D A+R+       S     +  +     A+P YL      L
Sbjct: 122 LSVHFEVGHRYIDLIEERIDIAVRMSSTAVEESDSVIPMAFVDQILVASPSYLNQTSPIL 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L+ H L++   +      +F   A     +     S LQ N+       C  G GI
Sbjct: 182 HPNDLNNHELLSINAMNDSRSFNFQH-AKTGEKLNIEMTSRLQSNNLQVAKALCQQGHGI 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +     +    N +L+ I+ D   P+FT+Y    +  +   K++     +
Sbjct: 241 ARILYLDAQKELKNGSLIEILPDWKLPAFTLYAEIAKHDQQPMKIQRCVEAL 292


>gi|170722395|ref|YP_001750083.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169760398|gb|ACA73714.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 306

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 128/293 (43%), Gaps = 14/293 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D   +++ F  VA   SF  AA  L  S S+++R I  LE   G KL  R+A  +TL
Sbjct: 1   MALDMLREIQAFVSVAHKRSFVAAARALGRSPSAVTRAIQALEDNSGCKLLNRNANAVTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G +L      +         EL   S    G +R       G+++L G L  F   +
Sbjct: 61  TDAGERLLPHAERLLDVQRDAADELAALSGSAQGWIRFGVPQLFGEHVLPGVLAAFSRRH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +   ++ +D  +   D  +R   P QSS LI   L     H YA+P YL     
Sbjct: 121 PQVTLDVHYRDEALDPLLGKLDFVVRGAFP-QSSELIGYPLWRYQRHLYASPDYLARHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++L  H+LI      P+ ++ ++  +   R         L+++S  ++    + G+
Sbjct: 180 PKRPEDLADHSLILH--TAPRILKAWH-FSRDGRITSLRPHPRLRLSSGDAVYHSTLAGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLK 284
           GIA L D++ +       LVR+  D    S T     ++  YP   +   +++
Sbjct: 237 GIARLADWVGEAQVSAGRLVRVCADYRLTSSTGQDPQMHAVYPAG-ELPARVR 288


>gi|150396479|ref|YP_001326946.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027994|gb|ABR60111.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 302

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 120/302 (39%), Gaps = 9/302 (2%)

Query: 1   MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+      L  F  VAR  SF  AA +  +S S++S  +  LE ++G++L  R  R +T 
Sbjct: 1   MNDLPLADLDAFAAVARERSFRTAARKRGVSASALSEALRRLEAKLGVRLLNRTTRSVTP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L    +    ++     ++      P+G LR+     + + +L   +  F+  +
Sbjct: 61  TEAGKRLLERLTPALGEIAGALDQVASERDSPAGTLRLNVPTIVARVILPPLVGRFMKAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNC 177
           P I +++  ++  ID+     D  +R  + ++   +I   L          AAP YL   
Sbjct: 121 PAITLEVTAEDGFIDVLAAGFDAGVRYEERVEKD-MIAIPLGPRVQRYITAAAPDYLARR 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            EP   ++L +H  +         +         D  I     S +  N+    +   V 
Sbjct: 180 GEPQHPRDLLEHATVRHRFQNGVMLPWE--FGEGDATIIIAPPSTVLANTIELEISAAVD 237

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G G+    +  +K   +   L+ +++   T     +  Y         L+AF +F+  + 
Sbjct: 238 GLGVIRTFEEFLKPEIEAGRLITVLDAWETSFPGPFLYYAGRRHLPAPLRAFVDFLKSEQ 297

Query: 295 RD 296
           R 
Sbjct: 298 RQ 299


>gi|260463020|ref|ZP_05811223.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031141|gb|EEW32414.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 301

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 120/297 (40%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L+ F  VAR+G F  AA    +S SS+S  +  LET +G++L  R  R +  T
Sbjct: 1   MATDLGDLQAFMAVARAGGFREAARVSGVSASSLSETVRRLETGLGVRLLNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L         ++E     +     +P+G LR+   +   + +L   L  FL  YP
Sbjct: 61  EAGARLLERLGPALGEVEAALDVVNGFRGRPAGTLRLNVPVVAAKLVLPRLLPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY--AAPHYLKNCR 178
           DI++++  ++  +DI     D  IR  + ++   +I   +          AA  YL    
Sbjct: 121 DIRMEVTAEDSFVDILASGCDAGIRYDERLEQD-MIAVPIGPRRQRFATGAASTYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY--CV 236
            P   ++L  H  +  G         + +    +    EP    L        +     +
Sbjct: 180 RPGHPRDLLAHACLR-GRFASGLTPAWEFERDGEVVSVEPTGPLLVSTGTAMALALEVAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  L +  ++   D+  L  ++E         +  YP        L+AF +F+
Sbjct: 239 AGGGIVSLFEDWLRPYFDDGRLEPVLEPWWQEFSGPFLYYPGRRLTPAPLRAFIDFV 295


>gi|145589741|ref|YP_001156338.1| LysR family transcriptional regulator [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048147|gb|ABP34774.1| transcriptional regulator, LysR family [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 291

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 140/293 (47%), Gaps = 6/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +WD L+ F  +A+ G    AA  L ++ +++SR+I  LE E+G++LF R+  G  LTE
Sbjct: 3   SMNWDHLQYFLALAKDGRLIVAARSLGVNHTTVSRRIQALEREMGVQLFSRNNLGFELTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L  +  +V  ++      +   + + SG +R+  T   G  ++   L E    +P 
Sbjct: 63  AGMQLQNIAHKVEQQINGISKNIGSENTEISGTVRVGATEGFGTFIVGPILYELSKKFPR 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L+   + +++S   AD AI L++P +   L+  KL    +  YA+  YL +    L
Sbjct: 123 LSIDLLSLPRIVNLSRREADIAITLQRPTRGPYLVT-KLRDYELKLYASNEYLASNPAIL 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +LDK   I++ D +      F+   +    I +P+    +  S  S +Q   +G G+
Sbjct: 182 SRGDLDKQTFISYVDDL-----LFSKELSYLDEICKPKQISFRSTSIQSQLQAARVGLGV 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+LP ++V+    L  I+   I    + +   P   K   ++    + +  +A
Sbjct: 237 AVLPSFMVQAQDGLQEILPKDIRIIRSFWMMMPNEYKKVDRMNLVWDCLKKEA 289


>gi|66043301|ref|YP_233142.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63254008|gb|AAY35104.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 316

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 112/295 (37%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LT+
Sbjct: 7   DVSLDLLRAFEVAARLRSFTAAALELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  + PD
Sbjct: 67  AGEVLFSHVQAGLQSIDSGVIAITEHHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  L   + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESHWLFSEEVFPVCSPQLLAGRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PTDALRDFPLLHLRGESINNWFDWAGVFRALDIPQAPAPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWKHLVDDLLDQGLLCRPIAGAAISGQGYYVVLPQRKRRVQIVQQFVDWLASE 298


>gi|13474117|ref|NP_105685.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14024869|dbj|BAB51471.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 301

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 126/292 (43%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF  V+R  SFT AA +L ++Q+++S QI  LE  VG  LF R  R + LTE G 
Sbjct: 15  LQAIRVFEAVSRQLSFTKAAVELAMTQAAVSYQIKVLEERVGAPLFLRRPRQIELTEAGQ 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    SE +  L         +     G L + T +    N L  +L  F + +P + +
Sbjct: 75  RLAPAVSEAFAILSQA---YAAARGGADGLLCVTTVLTFASNWLAHHLGSFQMAHPALAV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++  D + +  D AIR     +   L   KL+        +P    +        
Sbjct: 132 RLETSSRLTDFAREDVDLAIRSGSG-KWPGLEAHKLLDADFTPMLSPKLAASIGGVKEPA 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +  ++  GD+     + F         + +   S +   +Y +     + G G+A+L
Sbjct: 191 DLLRLPILDPGDI--WWTQWFEMAGVHAHDLAKRPGSSMGAQAYEA--NAAIAGHGVAIL 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              + K    +  L++  + V       +  YPEA +N  K++AFR+++  +
Sbjct: 247 TRALFKAELADGRLIQPFDLVGDDGHAYWLVYPEARRNVPKIRAFRDWLLAE 298


>gi|312958776|ref|ZP_07773296.1| transcriptional regulator [Pseudomonas fluorescens WH6]
 gi|311287319|gb|EFQ65880.1| transcriptional regulator [Pseudomonas fluorescens WH6]
          Length = 309

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 120/293 (40%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + LS +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMELSPAVASAALKRIEQQLGARLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       L+  +  L       SG L+++   D G+N L   L EF   YP + +
Sbjct: 64  GFLDYARAALSSLDEGRRLLASGQDHVSGVLQLSAPSDFGRNQLLPWLDEFQREYPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH-MHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSLI   +   +     AAP YL    EP  +
Sbjct: 124 RLLLGDRIADLFRQPVDIALRYGEP-EDSSLIALPVAPDNIRVLCAAPVYLARHGEPRHL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +HN + +  ++   + D        R +          +    + ++ V G GIA 
Sbjct: 183 EQLAQHNCLLY--MLGSRVHDHWAFHDGKRDVSLTVGGDRFSDDADVVRRWAVAGVGIAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V  +     L  I+ ++      +        + +  +   R  +  +
Sbjct: 241 KSWLDVSTDVLAGRLRLILPELRGERTPLNLLCAHRAQLSKPINLLREMLVSR 293


>gi|195970145|ref|NP_386710.2| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307307827|ref|ZP_07587556.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|187904204|emb|CAC47183.2| Transcription regulator LysR family [Sinorhizobium meliloti 1021]
 gi|306901693|gb|EFN32295.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 302

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 128/289 (44%), Gaps = 5/289 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  V R G F  AA    +S S+IS+ IS LE  +GI+L  R  R +  TE G 
Sbjct: 6   LDSLEIFEDVVRCGGFRAAALGRGVSSSAISQSISVLEEALGIRLLNRTTRSVAPTEAGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L        +++ T   +L +   +PSG +RI        ++L     EF+ +YPD+ +
Sbjct: 66  QLLERLRPALYEIRTAVDDLNQLRERPSGTVRINAPGPAADHVLCPLTFEFMKIYPDVNV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++ D   IDI     D  +R    +    +       +     A+P YL+    P S +
Sbjct: 126 EIVSDAAIIDIVEQGFDAGVRFGNQLAQDMIAMPLGPALRYAIVASPDYLRKRGRPHSPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ I         M  + +    D     P+   L ++S    +Q  + GSGIA L
Sbjct: 186 DLLQHDCIR-RRFPGGTMVTWKFARDGDEVEITPK-GRLTLSSAHQELQAALAGSGIAHL 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  V+D+     LV ++ D      + Y  YP     +  ++AF  +I
Sbjct: 244 FEDYVRDDVEQGRLVELLCDWKQKLPSWYLYYPSRRHTSAAMRAFLEYI 292


>gi|163850782|ref|YP_001638825.1| carbonate dehydratase [Methylobacterium extorquens PA1]
 gi|218529530|ref|YP_002420346.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|163662387|gb|ABY29754.1| Carbonate dehydratase [Methylobacterium extorquens PA1]
 gi|218521833|gb|ACK82418.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 304

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 109/300 (36%), Gaps = 10/300 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M  +      L  F  +AR  SF  A  +L +S S++S  +  +E  +G++L  R +R +
Sbjct: 1   MRINRTELADLGTFLAIARHRSFRRAGLELGVSASALSHALKAMEARLGVRLINRTSRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQI--ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
           TLT  G  L       +  + +     +        +G++R+         LL   L  F
Sbjct: 61  TLTAAGEDLLASLDAPFAAIGSALDVLDQHRDPTAATGRIRLNVLEHASTLLLAPVLPLF 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              +P ++I + + N  +D+    AD  IR    +    + QR    +      AP YL 
Sbjct: 121 HARHPQVEIDVRVSNDLLDVVDAGADAGIRYGGTVPQDMVAQRLSADLRWVVVGAPAYLD 180

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P   ++L  H  +       +           D  I       + +++    +   
Sbjct: 181 RQGIPDHPRDLAAHRCLRIRLGDDRLYRWE--FERADEQIALDVPGAVTIDNTQFGLSLA 238

Query: 236 VLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G G+A LP   V+ +     L  ++ D        +  YP   +    L+   + I  
Sbjct: 239 LAGGGLAYLPQPCVEPSVARGELRVVLADWGPIGPGFHIYYPGRRQLPTGLRLLTDLIRE 298


>gi|86144613|ref|ZP_01062945.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222]
 gi|85837512|gb|EAQ55624.1| transcriptional regulators, LysR family protein [Vibrio sp. MED222]
          Length = 309

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 127/291 (43%), Gaps = 10/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + ++L +F  V + GSFT AA    +  SS+S+QI  LE ++G++L  R  R  +LT  G
Sbjct: 3   NTNQLLLFLDVVQQGSFTKAATLHDMDNSSLSKQIKKLEQDLGVQLLNRSTRSFSLTSAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +   T  +   +   Q        +P G LRI + I  GQ  LQ  + +F+  YPD+Q
Sbjct: 63  EDILAQTYVLKDTINQIQGIADSYQSEPKGVLRITSPIYFGQQYLQPIITQFMRKYPDVQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L LD+K  +I     D A R  K ++ S+LI +K+   +    A+  ++K   EP + 
Sbjct: 123 IVLSLDDKIANIIAGQFDIAFRFSKLVE-SNLIAKKIADSNFMLVASNDFVKEHGEPKTP 181

Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           Q+L     + +  GD+    +                R    +V+   +++     G G 
Sbjct: 182 QDLLYLPAVIYTNGDMTVDHLRISEEPHGNTFQSLTIR-GNYKVSDVRTMVSCVKDGLGY 240

Query: 242 ALL---PDYIVKDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFR 287
             L     Y       LV ++ D    +    +Y  YP   + T  +K F 
Sbjct: 241 GFLDQSNLYASMKELGLVTLLPDYAISTVDTAIYAVYPHRKQ-TKLVKEFI 290


>gi|330863886|emb|CBX73977.1| hypothetical protein YEW_GR28640 [Yersinia enterocolitica W22703]
          Length = 290

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 112/273 (41%), Gaps = 6/273 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  +  V   G F+ AA  L L +S +SR+++ LE  +G++L  R  R   +T+ G
Sbjct: 3   DLNDLYYYAEVVEHGGFSAAARVLGLPKSKLSRRLALLEERLGVRLIQRSTRRFAVTDVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +  Q  ++ +  +P G +RI   + L Q  +   L +F+   P + 
Sbjct: 63  RTYYEHCKAMLEEAKAAQEAIELTRAEPRGVVRITCPVALLQATVSAMLADFMASCPLVT 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + L   N+ +D   +  D AIR+R  P+Q S L+ + L        A+P  +    E   
Sbjct: 123 LHLESTNRQVDPVAEAIDIAIRVRPPPLQDSDLVLKVLGNRCQCLVASPELIARLGEVKV 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G   P+    +N                L      ++    V G G+ 
Sbjct: 183 PADLTGWPSLGLGQ--PQQEFIWNLDGPEGAHAAVYHQPRLVTADMTTLRSAAVSGVGVV 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFC 272
            LP  +V +     +L+R++ +       ++  
Sbjct: 241 QLPVMMVTEQLAAGDLIRLLPEWSLRHEIIHAV 273


>gi|183179384|ref|ZP_02957595.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
 gi|183012795|gb|EDT88095.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-3]
          Length = 316

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 134/296 (45%), Gaps = 12/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R+++ L LT++
Sbjct: 12  MKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLTKE 71

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E++ ++E  Q E++++     G++ I+  +   ++ L     EF  L+P++
Sbjct: 72  GEQLFHSYAELFAQIERKQEEVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHPNV 131

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC----R 178
            +++ + +     S    D A+R   P   S  + RKL        A+            
Sbjct: 132 TLRMQVGSGLDYFSQRDLDIALRFG-PQPESDWVARKLARNPSVLCASAELAAKLSTVTP 190

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                ++L +H L++    +P          +V + +     + L  +   +I+Q  + G
Sbjct: 191 ALAHPEQLKEHPLLSLNHKLPWIFHHH----SVAQKVQFIPTARLCSDELDTIVQATLQG 246

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GIA LP  +++    +  L+ ++ +       VY  +P+      + +A  ++I 
Sbjct: 247 MGIARLPRGLMEPLLHSGQLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDYIM 302


>gi|90409716|ref|ZP_01217733.1| Hypothetical transcription regulator [Photobacterium profundum
           3TCK]
 gi|90329069|gb|EAS45326.1| Hypothetical transcription regulator [Photobacterium profundum
           3TCK]
          Length = 312

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 141/301 (46%), Gaps = 15/301 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +K+  F  V ++GSF  AAE+  +S ++ SR I  LET + ++L  R  R L  T+ G 
Sbjct: 15  LNKIAFFCSVIQNGSFREAAEEWGISAAAASRWIKELETLMAVELIKRSTRQLVPTDAGE 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L++  S +  +++T   E++  + +  G + I++T       L+  + E++ ++P +  
Sbjct: 75  LLYQRFSTLLPEIDTICSEVESMADEQRGVITISSTPLFASYYLREIIAEYMEMHPKVNF 134

Query: 125 QLILDNKDIDISMDYADCAIRL-----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +L ++  + D    Y D  IR          + S LI+R L++  ++A AAP YL  C  
Sbjct: 135 RLFIEAGETDPL--YVDFIIRAKATNRETEEKDSLLIRRPLLSEPLYACAAPSYLARCGT 192

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P+  +EL  H  +    L+        W   +D       IS  L+ ++   +    + G
Sbjct: 193 PVEPEELGDHRCLYASSLVGGN----RWYFCLDGVNRAVTISDALECDNSEILRDLAIRG 248

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +G+A LP  +++    +  L   + D +   F +   +      + + K F++++  + +
Sbjct: 249 AGVAYLPYSVIRGALADGRLKVFLTDFVASRFDINLYFRPRHPMSVRCKTFKDYMLRRTK 308

Query: 296 D 296
           +
Sbjct: 309 E 309


>gi|17548051|ref|NP_521453.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430357|emb|CAD17122.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 298

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 117/288 (40%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q +  R +  LE  +G  LF R  +GL+ TE   
Sbjct: 8   WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAAL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +                   G +RI  +  +   +L   L +    YP + +
Sbjct: 68  ALRPYAESLESTSAALLRAASSQGEGVRGTVRITASEVVTAEVLPAILADLHAAYPGLIL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N+  D+    AD A+R+++P Q   L+ R +  I +  +A   YL+    P ++ 
Sbjct: 128 ELVPSNRLEDLLRRDADIAVRMQRPSQ-GVLVARHIGGIELGVHAHRRYLERRGTPATLD 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI +          F        P        L+ +S L+ +     G GI + 
Sbjct: 187 DLAGHALIGYDKETA-----FIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGIC 241

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + + +P+LVR+  D + P    +    E L+ + + +     +  
Sbjct: 242 QVGLARRDPDLVRLFADDVAPVLDTWLAMHEDLRESLRCRVVFEALAA 289


>gi|293416168|ref|ZP_06658808.1| hypothetical protein ECDG_03770 [Escherichia coli B185]
 gi|291432357|gb|EFF05339.1| hypothetical protein ECDG_03770 [Escherichia coli B185]
          Length = 298

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 129/290 (44%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+    F ++A  GS++ AA +  +S+S +SR+++ LE  +G++L  R  R L LT  
Sbjct: 2   IDWNDYYYFALIADEGSYSQAALRAGVSKSVLSRRMAALEERLGVRLIQRTTRRLALTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  + E  +  +  +   P G LR++  + + +      + EF+  +P  
Sbjct: 62  GEQFAVECRALMAQEERARAVVMAAQESPQGMLRVSAPVFMAETWFGEFVSEFIARWPLA 121

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++QL+  N+ +D+  +  D A +     +  S+L  +KL T      A+  +L    +  
Sbjct: 122 KVQLLAINRPVDMVAEGIDIALVTASGALTDSTLHYKKLHTQADILVASSQWLARHPQVK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I++L+  + I     +         L   ++ I     + LQ N+   ++Q  + G+G+
Sbjct: 182 AIEDLNHVDGIL---RLANNGGSQWQLINGEQEITLQPEARLQSNNLRVMLQAVLGGNGV 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           ALLP +  K    N  LVR+          +Y  +          + F +
Sbjct: 239 ALLPQFACKQGLVNGELVRLFAPWSGIPRPLYALFAGRKGMPAIARYFMD 288


>gi|167571992|ref|ZP_02364866.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 304

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 123/294 (41%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +GIKLF R  RGLTLT  G 
Sbjct: 12  LNALRTFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGIKLFERLPRGLTLTADGL 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +PDI I
Sbjct: 72  AYFSDVQRALNLIGDATDRLVKRRS----SVTISTTPSFASRWLIPRLASFGDEHPDIDI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + ++A  +P  L +     S +
Sbjct: 128 RVIADSQFATFRSDGVDLAIRYGKPPFGKGLVTRFLFPVDIYAVCSPSLLTSPGALASPR 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+     +        +LA +   +        + N     +   + G G+AL+
Sbjct: 188 DLAGHVLLHDAHDL-----WPEFLAAMPERVAIDPHRGPRFNQSSLAIDAAIAGHGVALV 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V  +     L R+ +  +  S   +  YP   +    +     ++   AR
Sbjct: 243 SDQLVGRDIEAGRLCRLFDFALPLSVGYHIVYPNEPRRPNDIATMEAWLIRHAR 296


>gi|107027363|ref|YP_624874.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693927|ref|YP_839460.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|254249380|ref|ZP_04942700.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|105896737|gb|ABF79901.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651927|gb|ABK12567.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|124875881|gb|EAY65871.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 315

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 126/288 (43%), Gaps = 8/288 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD  RVF  + R  +   AA+ L + Q+++ R+++ LE  +G  LF R ++G   T 
Sbjct: 25  TMNWDDARVFLAIHRERTLRRAAQTLGVDQATVGRRLATLEHMLGATLFLRSSKGYLPTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R    +           Q    + +G+++I TT  L    +  ++      +PD
Sbjct: 85  VGELALRAAEAMEQHAHELVRLTQGVDRRLAGEVKITTTDALAIEFVMPSIARLHAKHPD 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L      ++++   AD AIR  +P ++  L+ R+L    M  +A+P YL    EP 
Sbjct: 145 VSVALNTSTHILNLAKREADIAIRTVRP-ENPDLVARRLACWDMGLFASPDYLHRHGEPE 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +    H+L  +   I    +          PI   RI   + NS L +      G G+
Sbjct: 204 RGRAFAGHDLAVYQPYIDASRKP----TLAGEPIDGGRI-VTRTNSNLMLRAALRAGLGV 258

Query: 242 ALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRN 288
             +P ++ + +  L RI  D +    + V+      L++T +++A  +
Sbjct: 259 GEIPVHMGERDG-LARIWPDRMRASPYEVWLVTHRDLRHTARIRAAID 305


>gi|299132478|ref|ZP_07025673.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gi|298592615|gb|EFI52815.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 301

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 115/294 (39%), Gaps = 5/294 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D      F  + R  +F  AA ++ ++ S++S  I+ LE   G++L  R  R +TLT  G
Sbjct: 7   DLADFLYFLAIVRHSNFRRAALEMGVTTSALSHAITALEARRGVRLLNRTTRSVTLTAAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L          +      L      P G++RI    D    LL   +  F+  YP+++
Sbjct: 67  AELRASIEGPLQIVGDAAENLNRFRDAPMGRVRINILEDAVPLLLDPVMPIFVDRYPEVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + + + N+ ID+     D  IR    +    + QR    I   A A+P YL+    P + 
Sbjct: 127 VDISVSNRLIDVIASGFDAGIRYGGTVPEDMIAQRLSPDIRWVAAASPVYLERFGTPTTP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L KH  +       +  +           +       L V+   + + + + G G+  
Sbjct: 187 HDLHKHRCVRIRLGNDQIYQWE--FERGQEAVAVATPGPLTVDESHAAIGFGLSGVGMIY 244

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             + +++   D  +L  ++ D  +     +  Y    +    L+   + I   A
Sbjct: 245 GAEPVLRPYLDRGSLKVVLSDWASMGSGFHAYYSGRRQVPTALRLLIDLIREIA 298


>gi|190573119|ref|YP_001970964.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011041|emb|CAQ44650.1| putative LysR-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 299

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 126/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+ F  VAR GSFT AA QL +SQS++S  + GLE  +G++L  R  R ++ TE G
Sbjct: 5   NLNDLQAFVHVAREGSFTKAAAQLGVSQSALSHAMRGLEQRLGVRLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++L         ++E     L E   +P+G +RI  T    + +    L   L  YPD++
Sbjct: 65  ARLLDTLGPRLAEIEDGLAALAEYRERPAGTIRINATGHAAEYIAWPRLAPLLQQYPDLK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  D    DI  +  D  IRL + +    +       + M    AP Y +    P   
Sbjct: 125 VELAADYGLADIVAERYDIGIRLGERLARDMVAVPISPPLRMRVVGAPGYFRQHVVPRHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            EL  HN +T    +P       W    D      R+S     N+        + GSG+A
Sbjct: 185 DELADHNCVTL--RLPTHGGLMPWDFGQDGNELSVRVSGQWTFNTMGMTRAAALAGSGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+  V+   D+  L  +++D        Y  YP     T  ++   + +
Sbjct: 243 WLPEDQVQPMLDDGRLQSVLDDWCPHFDGYYAYYPSRRHVTVAMRTVLDAL 293


>gi|54301752|ref|YP_131745.1| putative transcriptional regulator [Photobacterium profundum SS9]
 gi|46915172|emb|CAG21945.1| putative transcriptional regulator [Photobacterium profundum SS9]
          Length = 297

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 137/298 (45%), Gaps = 12/298 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +WD +R+F  VA  GS + AA+ + +SQ ++SRQI  LE   G+ LF R   GL LT 
Sbjct: 3   SMEWDSIRIFLAVAEQGSMSAAAQVVGMSQPTVSRQILALEERTGLHLFERSTSGLKLTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     +     E    ++  SS++ SG +R+A +   G + L   L  F  ++P 
Sbjct: 63  VGCQLLESAKDTALGAERFSRQVNGSSIEESGNVRLAVSELFGFHFLPEALAAFHRVHPL 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LI+ N  ++++   AD +I  +KP +   L+   L++  +  +A   Y+ +   P 
Sbjct: 123 INVELIVSNDKVNLNKRDADISICQQKP-EQPDLVVTYLMSRTLGFFAHKAYIDDVGYPE 181

Query: 182 SIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  ++    H++I F +      +     A         +    + +SY   +      +
Sbjct: 182 TPDDIYRAPHSVIGFDNSNMYINQ-----AEKSGRNLTKKQFTFRTDSYQMQLNLIQAQA 236

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           G+A+    + K    L+ I +D+  P+ T +      ++   ++     F+    R+W
Sbjct: 237 GVAVTITELAKKTAGLIEIFKDIPLPNITWWLVCHRDVQVNPRIHHLMVFL----REW 290


>gi|330819191|ref|YP_004348053.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327371186|gb|AEA62541.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 297

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 119/296 (40%), Gaps = 8/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + L+VF   AR  SFT AA +L ++Q+++S Q+  LE E+GI+LF R    L LT  G
Sbjct: 7   SLNGLKVFECAARHMSFTRAAAELSVTQTAVSHQVRRLEDELGIRLFLRLRERLELTPAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +  S  + +L  +  +L E        L I+T        L   L  F   +PDI 
Sbjct: 67  QAYLQGVSLAFEQLRFSTEQLSEGGRDT--TLTISTLATFASKWLLPRLGSFRRAHPDID 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++      +D     +D  IR         L   +L+   +    +P  L +    +  
Sbjct: 125 IRIGASTDFVDFVAGGSDVGIRYGHG-DWKGLRCDRLMGDEILPVCSPSLLADGPALVEP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H L+    +     +   W      P      + +  +  L  +Q  V G G+ +
Sbjct: 184 ADLAHHTLLQVNGVT--ADDWPRWFEAAALPAHLAGSARMSFDLALLAVQAAVDGQGVCI 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V+D+     LV   + V T     Y   P    ++ K+ A R+++   ARD
Sbjct: 242 GRRAYVEDDLREGRLVAPFDLVATTDRGFYLVSPVEFADSAKVTALRDWLLEMARD 297


>gi|188533935|ref|YP_001907732.1| Putative transcriptional regulator, LysR [Erwinia tasmaniensis
           Et1/99]
 gi|188028977|emb|CAO96843.1| Putative transcriptional regulator, LysR [Erwinia tasmaniensis
           Et1/99]
          Length = 309

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 127/291 (43%), Gaps = 9/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +++ +F +V   GS   AA +L +S S++S+ +  LE  VG+ L +R  R L L+E G+
Sbjct: 4   LNRMAIFAIVVNEGSLAGAARRLGMSPSAVSQHLRALEQSVGVPLLHRSTRKLALSEAGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  + +  + +L E     +G+LRI++T  +G   L   +   L  +P +++
Sbjct: 64  AFFPGCKAMLDQAQEAEKQLAEMRDTLTGELRISSTPGIGGQPLCSAMSPMLQQHPGLKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++  +  +D+     D A+R  + +  +++I   L    M   AAP YL     P +  
Sbjct: 124 RILATDNVLDMIEHRIDIALRFSRQLSDANIIAHPLAEWPMVVCAAPGYLSRYGVPETAT 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H  +                 ++   + E     +  +S   I  + V G G++L 
Sbjct: 184 ALISHRWVHGHRSHQHVTLHHPREGSIVLRMAE---GQIVSDSMHVIRAFTVAGMGVSLQ 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEAL---KNTGKLKAFRNF 289
           P + V++   +  L+ ++ +       +     E +   K+   L+A R +
Sbjct: 241 PLHEVQEELSSGQLMLLLPEWRADPLKLTALTLERVLPEKSRQALRALREY 291


>gi|295689438|ref|YP_003593131.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295431341|gb|ADG10513.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 306

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 123/294 (41%), Gaps = 18/294 (6%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
           VF  V R+GSF+ AA +  ++ S+I RQI  LE  +G+++  R  R L +T+ G +L   
Sbjct: 12  VFVDVVRAGSFSGAARRRGVTPSAIVRQIDALEHGLGVRVLVRSTRALAMTDAGQRLFER 71

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +   L     E+       +G LR+A     G+  +       +  +P + ++L L 
Sbjct: 72  GQRLIDDLVDVHAEIAAFDGAVAGVLRVACFPTFGKRYVLPVAGALMRQHPGLSVELDLT 131

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
            +  D  +D  D AIR+ + +  S LI  KL        A+P YL     P S+++L  H
Sbjct: 132 ERLADPVLDRLDAAIRIGQ-LTDSGLIATKLADQARLLVASPDYLARYGAPGSVEDLRGH 190

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVLGSGIALLPDY 247
            ++          +   W   +    G+P       + + + ++      G G ALLP +
Sbjct: 191 RVL----DKLHGADLLGWTDLLGGAAGQPNCGQVVFRSDDFEALRLAAREGVGAALLPSW 246

Query: 248 IVKDN---PNLVRIM---EDVITPSFTVYFCY--PEALKNTGKLKAFRNFIFLK 293
           +   +     L R+    E        ++     PE    + KL+AF + +   
Sbjct: 247 VAGPDVREGQLTRLQLDDEPWNDRPRGIFLLRALPE---PSAKLRAFIDALRAA 297


>gi|221234111|ref|YP_002516547.1| LysR family transcriptional regulator [Caulobacter crescentus
           NA1000]
 gi|220963283|gb|ACL94639.1| transcriptional regulator, LysR family [Caulobacter crescentus
           NA1000]
          Length = 318

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 117/291 (40%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F+ AA++L ++  ++S+QI  LE  VG  LF R  +GL LT+   
Sbjct: 13  LNALRAFEAAARHLNFSRAADELSVTPGAVSQQIQNLEDYVGAALFKRTPKGLLLTDAAQ 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E + +L      L  +      +L +          L   L +F   +P + +
Sbjct: 73  TALPALREAFDRLAEAASLLTAAVDGR--RLTLTAAPSFAAKWLVPRLGKFEQAHPQVDV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L    + +D +    D AIR     +   L   +L+   +   A+P  L+        +
Sbjct: 131 WLSAGMEVVDFATGEVDMAIRYGSG-RYPGLEVIRLLHETVVPVASPELLEQN-ALERPE 188

Query: 185 ELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H L+  G  D    C +   WLA      G       + N    +++    G GIA
Sbjct: 189 DLQHHILLHDGSPDADDSCPDWAMWLAARGIR-GVDGARGPRFNQSSLVIEAAANGRGIA 247

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L    + +   D+  LV   E      F  Y  +P+A     ++KAF N++
Sbjct: 248 LAKRTLAQADLDSGRLVIPFEASTAVDFAYYVVHPKAKGRLPQVKAFVNWL 298


>gi|167621804|ref|YP_001676589.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167351545|gb|ABZ74275.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 298

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 120/295 (40%), Gaps = 10/295 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS   + LR+F  VAR GSF+ A  +L + QS+ SR I+ LE  VG++L  R  R +TLT
Sbjct: 1   MSDQLESLRLFVRVARKGSFSAAGRELGVPQSTASRTIAELERRVGVQLLARTTRAVTLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+        +   LE     +   + +  G LR+         ++  +L  F+  +P
Sbjct: 61  DAGADYLARVEPLLAALEEA-DHVARGTGELRGMLRVGVGTSFATRMVIPHLPAFMARHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L++++   D+  +  D A R    +  S+   R+++       A+P YL     P
Sbjct: 120 ALHLDLLMEDARQDLITEGVDVAFRFG-TLTDSTATARRILAWPRMLVASPAYLARVGAP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +   +L +H LI             +  A   +  G  RI   +     ++        G
Sbjct: 179 VIPADLPEHELIVGPSGGAHWSFRKDGTAASIQVEGRLRIRVSEGAVAAAVAG-----LG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I +      +    +  LV+++ D    S  +   +          +A  +++  
Sbjct: 234 IVMASLGACRRELASGELVQVLPDWDAGSVEISAVFASGRAAKPSARALTDYLVE 288


>gi|264679227|ref|YP_003279134.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262209740|gb|ACY33838.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 321

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 126/304 (41%), Gaps = 17/304 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  SFT AAE+L ++ S++S Q+  LE  +GI LF R ++ LTLT  G 
Sbjct: 24  LNPLRAFEVSARHMSFTKAAEELFVTPSAVSHQVKSLEENLGIALFVRDSKTLTLTPAGK 83

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E + +LE    +L          L+I          L   L  F   + D+ +
Sbjct: 84  AYLPGVQEAFRQLEVATYQLHREKSTAL--LKINLPPTFAVKWLIPRLSRFASEHLDLDL 141

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++       D S D  D  IR  + +  + L    ++ + + A  +P   +         
Sbjct: 142 KVSTSKLMADFSRDDVDMEIRYGRGV-YAGLYSEMVLPVEVFAVCSPALQQGPHPIRDFA 200

Query: 185 ELDKHNLITFGDLIP--KCMEDFNWLATVDRPIGEPRISCLQVNSY---LSIMQYCVLGS 239
           +L  H L+                WLA     +G   I+  +  S+     ++   + G 
Sbjct: 201 DLRSHVLLHDDSTYDDVSNPNWATWLAH----MGVHDINATRGPSFWPSHLVIDAAIDGQ 256

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK-A 294
           G+AL+    V+ +     LVR+  +   P  F  Y  +P++     ++ +F +++  + A
Sbjct: 257 GVALVKKSWVQQDLASGKLVRLFPEYSLPIEFAYYLVFPQSRLGDPRITSFVDWMRAELA 316

Query: 295 RDWK 298
           RD +
Sbjct: 317 RDQQ 320


>gi|167561367|ref|ZP_02354283.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
 gi|167568598|ref|ZP_02361472.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis C6786]
          Length = 300

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 137/299 (45%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + ++L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQNELFAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVVFENRVEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPGFAATHGMPTE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    +IT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LDQLFDAPVIT-ATVVGRQLRVAAYLGDERHEVLLE--PTLISENFLFLRQSILAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++PDY+V D+     +V  ++      F   +Y  Y     +T     F  F+  +AR+
Sbjct: 237 IVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFVLEEARN 295


>gi|241554123|ref|YP_002979336.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863429|gb|ACS61091.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 303

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 113/301 (37%), Gaps = 8/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L  F  VAR+G F   A     S S +S  +  LE ++G++L  R  R +  T
Sbjct: 1   MKTDLGDLNAFVAVARAGGFREGARVSGSSASFLSEAVRRLEGQLGVRLLNRTTRSVVPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L         ++E     +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGKGLLARLGPALSEVEAALDVVNGFRDRPAGALRLNVPVSAARLVLPAIVPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++ D   +D+     D  IR  + ++   +I   +          A+P YL    
Sbjct: 121 DIRLEVVTDESFVDVIAAGCDAGIRYDERLEQD-MIAIPIGPRIQRFAIAASPDYLDRRG 179

Query: 179 EPLSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                 EL  H  I   F         +F     + R      +      +    +   +
Sbjct: 180 RLQHPSELLAHACILGRFDSGAMTAPWEFERDGEIVRVDPTGPLIVRVGGATDLAVDAAI 239

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+GI  L +  ++   D   L  I+E         +  YP        L+AF +F+   
Sbjct: 240 AGTGIVCLFEDWLRPHFDRGALEPILEPWWQRFSGPFLYYPGRRLVPAPLRAFIDFVKAS 299

Query: 294 A 294
           A
Sbjct: 300 A 300


>gi|118593198|ref|ZP_01550584.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118434283|gb|EAV40938.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 308

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 132/292 (45%), Gaps = 6/292 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW++ R F V A  GS + AA  L L+Q ++SRQ++ LE  +G+ LF R ++ L LT
Sbjct: 6   ITFDWNQARAFLVTAEEGSLSAAARALGLTQPTLSRQVAALEETLGVTLFQRVSKSLILT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L      +        +     S +  G + ++TT  +  ++L G L++     P
Sbjct: 66  EAGIELADHVRAMGDAASRVSLAASGKSQQVEGLVTVSTTDLMAAHVLPGILRDLRKKAP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++++  N   D+    AD AIR  +P     L  RKL +     + A   ++    P
Sbjct: 126 GVEVKVLCTNSLSDLRRREADIAIRHVEP-DHPDLYARKLRSAPARIFGARSLVEQFGRP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+ ++    + I F +      E   +L      + E  I  L   S +   ++   G G
Sbjct: 185 LTKEDAPDLDFIGFDN----NEELIGYLRVFGLKVTEVNI-RLGSPSGVVAWEFVRQGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +A++ D I    P +V    D+   SF ++      L  + +++   + +  
Sbjct: 240 LAIMADEIADRFPEVVPAFADIEPISFPIWLVTHRELHTSRRIRVVFDHLAE 291


>gi|330965112|gb|EGH65372.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 316

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 113/295 (38%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LTE
Sbjct: 7   DMSLDLLRAFEVAARLRSFTAAAIELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  + PD
Sbjct: 67  AGEILFSHVQAGLQSIDSGLIAITEQHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  + N + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESHWLFSEEVFPVCSPLLIANRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+           D+  +         P    L+ ++Y  I+Q  + G GI
Sbjct: 184 PNDALRDFPLLHLRGDSINNWFDWAGVFRALDIPQAPAPGQLRFDNYTLIIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWRHLVDDLLDQGLLCRPIAGAAISGHGYYVVLPQRKRRVQIVQQFMDWLASE 298


>gi|260463111|ref|ZP_05811314.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031232|gb|EEW32505.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 303

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 115/297 (38%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   AR  SF+ AAE+L+++  ++SR I  +E  +GI+LF R  R + LT  G+
Sbjct: 8   LTALPAFDAAARHLSFSKAAEELNVTHGAVSRAIRNIEDRLGIQLFDRGTRSVRLTPVGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                        +     +  +  + +  L ++T+       L   L  F     DI +
Sbjct: 68  AY--AAEVGKALDQIAAATIAATPDRSTRVLNVSTSDGFAGRWLVPRLHRFHRANADIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L       D   D  D AIR  +    + +    L    +    +P  L         +
Sbjct: 126 RLSTSGVFADFVSDGIDIAIRYGRG-DYTGVTVEFLADEEVFPVCSPELLAGEHPLRRPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI     I    +   WL        + +    + +S    ++  V   G+ L 
Sbjct: 185 DLRHHKLIHDAFRI----DWATWLDQAGVTDIDAKRGV-RFDSATFAVEAAVHSEGVLLG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
              +V  +     LVR  +  +  +   Y  YPE      K++AFR+++F + A DW
Sbjct: 240 RSALVSADLAAGRLVRPFDLALKSAARYYVVYPEGALRQKKVRAFRDWLFAEIAADW 296


>gi|330958382|gb|EGH58642.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 319

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 115/290 (39%), Gaps = 6/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G+ L +R  R   +TE 
Sbjct: 2   FDLNDLYYFVQVVECRGFAPASRKLSVPKSKLSRRIAGLEERLGVTLIHRSTRKFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +Q S  +P GK+ ++    +    +   +  F+  +P +
Sbjct: 62  GRDYYAHCVAMLVEAEAAEEAIQRSKSEPQGKVVVSCPPAMAAMGINEAIAGFMAAHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+ +   N+ +D   +  D A+R+R  P++   L+ + L        A P          
Sbjct: 122 QVHIESSNRRVDPLTENIDIALRVRFPPLEDDGLVVKTLGHSAQRLVAHPDLAALLPTNP 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L +   +      P+              +       L  +    I+Q  + G G+
Sbjct: 182 SFDDLARLPSLDVPSSTPEHRWLLE--NGPGHYVEVRHAPRLVSSDLDGILQAALQGVGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           A LP+ +V++      +V + +        ++  +         ++   +
Sbjct: 240 AQLPEILVREALQQGRMVELFDAHRPKCGILHAVFVSRRGLLPAVRGLLD 289


>gi|270262583|ref|ZP_06190854.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043267|gb|EFA16360.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 302

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/302 (22%), Positives = 133/302 (44%), Gaps = 11/302 (3%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M  +  W+  R F  V + GS + AA  L ++Q +  R ++ LE+ +G+ LF R   GL 
Sbjct: 1   MKLNIPWEWYRTFLAVMKEGSLSGAARMLAITQPTAGRHVAALESALGLVLFTRSQIGLQ 60

Query: 59  LTEQGSKLHRVTSEVYH---KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
            T+    L      + +    +E +       +    G +R++ +  +G  +L   + + 
Sbjct: 61  PTDAAVALQGHAQAMENTASMIERSAASFSTRTAGLRGVVRVSASEIIGTEVLPPLIAQI 120

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
              YP + I+L+L N+  D+    AD A+R+  P+Q   LI R++ +I +  +A+  YL 
Sbjct: 121 KKDYPQVTIELVLSNRIQDLLNREADIAVRMTAPVQ-EQLIARRIGSIEIGLHASSSYLA 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
               P S++EL  H L+ F  + P  ++       + R +       L+ +S ++ +   
Sbjct: 180 RRAAPESMEELFTHTLVGFDKMTPFILQALKHYPQLHRELF-----TLRTDSDVAQLNLI 234

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             G+GI +    +      L R+M D        +    E L+++   K   + +    R
Sbjct: 235 RAGAGIGMCQVQLANSPVPLQRLMPDFFAFHLDTWLVMHEDLRHSKACKTVFDILAEGLR 294

Query: 296 DW 297
            +
Sbjct: 295 AY 296


>gi|153212694|ref|ZP_01948351.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|254286162|ref|ZP_04961122.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
 gi|124116344|gb|EAY35164.1| transcriptional regulator, LysR family [Vibrio cholerae 1587]
 gi|150423831|gb|EDN15772.1| transcriptional regulator, LysR family [Vibrio cholerae AM-19226]
          Length = 316

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 134/296 (45%), Gaps = 12/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R+++ L LT++
Sbjct: 12  MKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLTKE 71

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E++ ++E  Q E++++     G++ I+  +   ++ L     EF  L+P++
Sbjct: 72  GEQLFHSYAELFAQIERKQEEVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHPNV 131

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC----R 178
            +++ + +     S    D A+R   P   S  + RKL        A+            
Sbjct: 132 TLRMQVGSGLDYFSQRDLDIALRFG-PQPESDWVARKLARNPSVLCASAELAAKLSTVTP 190

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                ++L +H L++    +P          +V + +     + L  +   +I+Q  + G
Sbjct: 191 ALAHPEQLKEHPLLSLNHKLPWIFHHH----SVAQKVQFIPTARLCSDELDTIVQATLQG 246

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GIA LP  +++    +  L+ ++ +       VY  +P+      + +A  ++I 
Sbjct: 247 MGIARLPRGLMEPLLRSGQLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDYIM 302


>gi|89899617|ref|YP_522088.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344354|gb|ABD68557.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 310

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 124/293 (42%), Gaps = 7/293 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  V   G F  AA  L +S + ++R ++ LE  +G +L +R  R L+L+  G    
Sbjct: 7   MRVFQKVIDEGGFAAAARALDMSPAVVTRLVADLENHLGTRLLHRSTRRLSLSVAGETYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   ++      +  + +  G LR+     L  ++L   +  F  LYP I + + 
Sbjct: 67  GRVRAILQDIDEAHGLARSQTHELEGVLRVLAPPVLASHVLAPLIAGFRQLYPKILLNIE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +       DY D  +        + +I RK+ +      A+P Y++    P + Q+L 
Sbjct: 127 VASFKEPPIEDY-DITLMPTDEAFDADVIARKISSTEAVLVASPAYIERKGAPATPQDLA 185

Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H ++      L P+    FN  A  D P+       L +N   ++++  + G+GI  + 
Sbjct: 186 QHEVLRLKAPGLRPRTWRLFN-SARQDEPLDVAVEPGLWINHTDTLLRAALDGAGITSVA 244

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +V        LVR++   IT   ++Y   P       + + F  ++  + R
Sbjct: 245 VDLVAPYLTRGELVRVLRPWITGRLSLYAALPSRKFLPERTRVFLEYLTERTR 297


>gi|119387118|ref|YP_918173.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377713|gb|ABL72477.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 300

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 120/299 (40%), Gaps = 16/299 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  V R+GS T AA+ L L+QS++SR +  LE ++G +LF RH + LT TE  
Sbjct: 9   NLSLLLAFDAVMRTGSVTGAAQDLGLTQSTVSRLLQSLEAQLGQELFIRHKKRLTPTEAA 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  R  S     ++   + L  +     G L +A         L   L +FL  +P + 
Sbjct: 69  ERYFRDISAALDLIQRGSMSLIANPD--GGSLDLAVLPTFATRWLAPRLPDFLSGHPGVS 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L    +      +  D  I   +          KL    + A AAP  L       + 
Sbjct: 127 INLTTRFRRFSFDEEPFDAMIFYGRD-DWPGAEHLKLFDERLTACAAPDLLARNPV-ATP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVLGSGI 241
            +L    L+              W A       EP      + ++ +  ++Q  + G GI
Sbjct: 185 ADLAGMVLLQLP------TRPDAWQAWFRGQGAEPPAPLDGMMMDQFSMMIQAAISGLGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           ALLPDY+ +       L  ++   +  S   +  +PE       L AFR++I  + ARD
Sbjct: 239 ALLPDYLARVEIAEGRLAPVLRQGVPGSGAYWLAWPERKAGLKPLAAFRDWIADRMARD 297


>gi|238895580|ref|YP_002920315.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547897|dbj|BAH64248.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 329

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 125/296 (42%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+    S+T AAE+L +S+S+IS++IS LE   G  L +R  R ++L++ G 
Sbjct: 21  WPHLYWLTVLEEQKSYTRAAEKLGISKSAISQKISELERVTGKTLVHRTTRSVSLSDDGL 80

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    +E + +L        +      G LR+   +   +  L   +  FL  +P + +
Sbjct: 81  RLVAELNEPFGQLRDIFTGACDEGGPLRGTLRLTAPVAFSRQQLVPAIAPFLHQHPQLHL 140

Query: 125 QLILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QL + ++ + ++ +  D AIR   R+ +  +  +   L        A+  Y++    P +
Sbjct: 141 QLEVTDRLVSLASEGFDLAIRHCRREALPDTH-VAWPLCHTATLTVASADYIRRHGRPET 199

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H  +T+     +    F    + D  +          N+  S+    + G G+A
Sbjct: 200 PEDLRHHQCLTYPRGPQRPQWTFASRQSPDARVTINVQGPFATNNSESLRDAVLAGLGVA 259

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFL 292
           LLPD+  ++      +  ++            +Y   P   + +  ++ F  ++  
Sbjct: 260 LLPDFSAREAIGRGLVQELLPAWQPVEVFADRLYVIRPYTPRVSRAVETFSRYLKA 315


>gi|91790128|ref|YP_551080.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699353|gb|ABE46182.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 308

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 123/298 (41%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  V   GSF  AA +  LS + ++R +S LE  +G++L +R  R + LT+
Sbjct: 1   MDRLQSMRVFQQVVDDGSFAAAARKFDLSSAVVTRLVSDLEDHLGVRLLHRTTRRMALTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   ++      Q  + + SG +RI T    G ++L   + EF   YP 
Sbjct: 61  AGVAYLARVRHILSDIDEAHAAAQAHAQEMSGVIRILTPPIFGVHVLGPLVAEFGRRYPK 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + +D+  +    DY D  +        +++I R + +      A+P YL+    P 
Sbjct: 121 VVLDIYVDSPLVPPVEDY-DLTLLGATDTFDANIIARPIASSDGILCASPDYLRRNGIPQ 179

Query: 182 SIQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++L +H  +          +          R +  P    + VN   ++++  V G+G
Sbjct: 180 QPEDLARHRCLRIKAPANRHRVWRLINPDENRRELEVPIEPAMLVNHSDTLIRAGVDGAG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I      +V ++     L RI+   IT + T+Y   P       +   F  F+    R
Sbjct: 240 IISQSIDLVANHLHSGALKRILSPWITGTNTLYAALPSRKFIPARTSVFLEFMTEYTR 297


>gi|229065820|ref|ZP_04201024.1| Transcriptional regulator, LysR [Bacillus cereus AH603]
 gi|228715436|gb|EEL67260.1| Transcriptional regulator, LysR [Bacillus cereus AH603]
          Length = 305

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 133/295 (45%), Gaps = 14/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   ISIELRQLEYFLAVSKELHFTRAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   + +F   YP
Sbjct: 67  EAGKVLLSHSKTIFHEVEQARSTIQDLNGLHHGSLTIGSLLTVVNYLLPPAILDFNKQYP 126

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L        +  +  D  I    P+Q   ++   L    +       +    
Sbjct: 127 NIELSVLGLRTGEIREKLLQNELDIGITF-LPVQDKEIVSIPLYKSELTLVVPTSHSLTE 185

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R+ +SI+EL  +  I    L+PK       + +  +         L++++  S++Q    
Sbjct: 186 RKYVSIEELQDYPSI----LLPKNFHLTELITSHCQNFNFKPKPILEISTMESLIQMVAQ 241

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G GI +LP    D++  ++   ++I  +  TP+  +   Y          + F  
Sbjct: 242 GMGITVLPKPYIDFLQNEHIQAIKI--ENPTPTIDIGLIYRRDKYMCAATRKFIE 294


>gi|163793888|ref|ZP_02187862.1| LysR family transcriptional regulatory protein [alpha
           proteobacterium BAL199]
 gi|159180999|gb|EDP65516.1| LysR family transcriptional regulatory protein [alpha
           proteobacterium BAL199]
          Length = 274

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 133/258 (51%), Gaps = 3/258 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L++F  VAR GS   AA    L  SS+SR ++ +E E+G++LF+R  R L+LTE 
Sbjct: 1   MDLNTLQLFCDVARLGSLAAAARHRGLDPSSVSRGVAAIEAELGVRLFHRTTRTLSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+        V ++LE  +  ++  S  P+G LR+  ++   Q  +   + +F   +PD+
Sbjct: 61  GAVYLSRAEAVVNELEQARDSVRAISAGPAGTLRLTASVAFAQICIVPLIHQFRDAFPDL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+  ++++DI  +  D AIRL  P +S  LI  +L+       A+P YL        
Sbjct: 121 KLELLATDRNLDIVAERIDLAIRLA-PDRSGELIGSRLMDTRYRVVASPAYLARAPRLTQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L KH L+ F   +P+    + +     + +       + ++S L++ +  + G G A
Sbjct: 180 PADLSKHRLLLFD--LPEFRSAWRFRGPDGQIVEVAVNGDVVISSALALRESALNGLGPA 237

Query: 243 LLPDYIVKDNPNLVRIME 260
           LL ++++  +    R+++
Sbjct: 238 LLANWLIDADIADGRLLD 255


>gi|319791750|ref|YP_004153390.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594213|gb|ADU35279.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 327

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 133/294 (45%), Gaps = 9/294 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VAR  +F  AAE++ L+QS++SRQI  LE EVG+ LF RH R + LT  G++L
Sbjct: 17  HLRAFEAVARHLNFRAAAEEMALTQSAVSRQIQSLEEEVGVSLFLRHTRAVELTSAGAQL 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +   +++    ++++S+ +    + + T        L   L+ F    P+I I++
Sbjct: 77  LLSVQQSLPRIDMAVRQIRQSAGRK--SVSLTTFASFASMWLIPRLEAFQRDNPEIDIRI 134

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+ +   D A+R   P ++      +L   ++   A+P  +K+     + +++
Sbjct: 135 DASDVAVDLEVADVDIALRYG-PREAMPPTAVRLFGENLTPVASPWLIKSSPPIKTPEDI 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS--CLQVNSYLSIMQYCVLGSGIALL 244
            +  LI  GD     +E   W    +    E       L  N    ++Q  + G G+ L 
Sbjct: 194 TRFTLIEAGDAHRTHLEWLTWRRWFEVNGLERAQPKRWLYFNYAYQMVQAALTGQGVVLA 253

Query: 245 PDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              ++ ++    +LV ++         + +           ++KAF +++ L+A
Sbjct: 254 RSSLIAESLANGDLVEVLPQHRMDSPMSYWLIAGPRNALRPEIKAFWDWLLLQA 307


>gi|310823374|ref|YP_003955732.1| transcription regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309396446|gb|ADO73905.1| Transcription regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 293

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 132/290 (45%), Gaps = 9/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  V  +GS + AA+QL LS +++SR ++ LE EV   L  R  R +T+T  G + +
Sbjct: 1   MATFVRVIEAGSLSAAAKQLRLSTAAVSRHVTALEQEVATPLLARTTRRMTVTVAGQQYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++  Q   ++   +  G LRI+  + +G       L+  +  +P +++ + 
Sbjct: 61  ERCLRVLREVDEAQSIGRD--GRLEGLLRISLPVTVGFLSGASLLRSLVGKHPGLRLDVR 118

Query: 128 LDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           L+++ ID+ ++  D AIR+  KP  S+ ++ R L   H    A+P Y++   +P +   L
Sbjct: 119 LEDRLIDLVLEDVDVAIRVAAKPPLSTEIVARPLSRWHRVVVASPAYVRRHGKPKTSAAL 178

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  I    +     E +  L          ++ C   N+   + +  + G G+ALLP 
Sbjct: 179 AAHESI--SPVRDAATEVWTLLNGAATARVRMKVRC-SCNAGHLLRELALDGLGVALLPH 235

Query: 247 YIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + V  +     L +++    +    VY  Y  + ++  +++     +   
Sbjct: 236 WFVAADLQNKRLRQLLPGWQSEPVEVYALYRASRRHEPRVRVLVEHLRAA 285


>gi|206564441|ref|YP_002235204.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198040481|emb|CAR56466.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 313

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 137/296 (46%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  +GS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKTTLDELQAFTAVVDTGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +E+ + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQDARAIIESVESAEEQMLARREMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +    D+     D AIR+ + ++ S+L  R++    +   A+P YL+   +P
Sbjct: 121 KVELELNSNEGITDLLERRTDVAIRIGR-LKDSTLHSRRIGNSRVRMLASPAYLEAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L KH L+ F    P+ +  +  L              +  +S  ++ Q  + G+G
Sbjct: 180 RKVEDLAKHTLLGFTQ--PESLNVWPILGADGEACRIE--PDVYSSSGETLRQLALEGTG 235

Query: 241 IALLPDYIV---KDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +  L D++    ++   L +++          ++  Y      + ++ +F +++  
Sbjct: 236 VVCLSDFVTARDREAGRLAQVLARQTLDVQQPIHAVYYRNTAISSRIASFVDYLIE 291


>gi|126643445|ref|YP_001086429.1| putative transcription activator [Acinetobacter baumannii ATCC
           17978]
          Length = 267

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 128/266 (48%), Gaps = 10/266 (3%)

Query: 35  SRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGK 94
           SR ++ LE ++ + L  R  R L LT++G +      ++ ++L   + ELQ+S    +G 
Sbjct: 2   SRSLTRLEAKLDVTLLERTTRKLKLTQEGQQFLIKARKILNELNAAEEELQKSDQGTAGL 61

Query: 95  LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSS 154
           +R+ +      +++   + +F   YPDI+I+L  +++ ID+     D A R  + +  SS
Sbjct: 62  IRVDSATPFVLHVIAPLMHKFRECYPDIEIELNSNDQVIDLLQHKTDVAFRFGE-LNDSS 120

Query: 155 LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP 214
           L  + +    ++  A+P YL     P   +EL++H+LI F    P  +  +      +  
Sbjct: 121 LHAKLVCKSRLYIVASPDYLALKGTPTQPEELEQHDLIGFTK--PTYINSWPIKVGDEYF 178

Query: 215 IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV---KDNPNLVRIMEDVITPSF-TVY 270
             + +I   + +S  ++ Q  + G GIA L ++ +    +   L+ + ED I   + +++
Sbjct: 179 FAQSKI---KASSGETVRQLTIRGHGIARLSEFEIWKDMEEGRLIALFEDKIEHQYQSIH 235

Query: 271 FCYPEALKNTGKLKAFRNFIFLKARD 296
             Y +      +++ F  F+  + +D
Sbjct: 236 AVYYQQEHLPKRIRLFIEFLAEQLKD 261


>gi|71737160|ref|YP_276743.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257482319|ref|ZP_05636360.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289627125|ref|ZP_06460079.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647319|ref|ZP_06478662.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298489134|ref|ZP_07007155.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557713|gb|AAZ36924.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298156334|gb|EFH97433.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322358|gb|EFW78452.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330744|gb|EFW86719.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330865979|gb|EGH00688.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330881108|gb|EGH15257.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|331009848|gb|EGH89904.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 307

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + +S +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDMSAAVASAALKRIERQLGARLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  L  S  +  G L+++   DLG+N+L   L EF   +P + +
Sbjct: 64  GFLEYARAALGSLEEGRRLLASSQDRCEGVLQLSAPSDLGRNVLLPWLDEFQQQHPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSL+    L        AAP YL+   EP  +
Sbjct: 124 RLLLGDRIADLFRQPVDVALRYGEP-EDSSLVALPVLPDNRRVLCAAPSYLQRHGEPQQV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +HN + F  ++   + D   L    R I          +    + ++ V G G+A 
Sbjct: 183 EQLAQHNCLLF--MLGDRVHDRWTLNDGKREISLTVSGNRFSDDADVVRRWAVAGEGVAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V  +    +L  +M D+I     +        + +  +      +  + + 
Sbjct: 241 KSWLDVAADVRAGHLKVLMPDLIGERAPLNLLCAHRAQLSKPVILLLEMLRSRCKQ 296


>gi|71282083|ref|YP_267547.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147823|gb|AAZ28296.1| transcription regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 299

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 127/296 (42%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +FDW+ +R F V A  G+ + AA+ L L+Q ++SRQ+S LETE+ I LF R  + L LT 
Sbjct: 7   NFDWNHIRAFLVTAEEGTLSAAAKALGLTQPTLSRQVSALETELCITLFERVGQRLVLTS 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G KL      +        + +   S K  G + ++        +L   + +     P 
Sbjct: 67  SGLKLLEHARGMGDAALEFSLAVTGQSQKIEGSVIVSAGELTAAYMLPKIISKLRREEPG 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I++++ N+  D+    AD AIR   P Q+  LI +K+    +  Y  P YL       
Sbjct: 127 IDIEVVVTNEASDLKRREADIAIRSFHPTQND-LIAKKIGEEVIWLYGTPEYLDQLPTIP 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  EL    +I F D      +  N             I+  Q    L  +  C  G G+
Sbjct: 186 SFSELKDIQIIGF-DRSNSLTDVLNKQGWQLSKKNFSLITSFQ----LLQLALCKEGQGV 240

Query: 242 ALLPDYIVKDNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              P+ +    PNLVR  E +       V+    + L+ + +++   +FI  +  D
Sbjct: 241 IFYPEQMGDQEPNLVRAYEHLGPVMKLPVWLVCHQELRTSLRVRRVFDFIATELSD 296


>gi|325518242|gb|EGC97999.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 293

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 129/288 (44%), Gaps = 14/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AAE+L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 13  LLVFEAAARHESYTRAAEELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 73  VELSGALGRIRGATLQ-AMSHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               ++D  +D  D AI +    +   L   +L    + A A+P         ++ Q   
Sbjct: 132 SRIGNVDFHLDDIDAAITVGAG-EWPGLRAHRLYNEFLIAIASPD--ATAGAAVTPQWAT 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           K  L+    +         W +       + RI    ++ S+  ++Q    G GI L+P 
Sbjct: 189 KQTLLG---VTSNQQAWAEWFSHNRLDHRQMRIGPSFELTSH--LIQAVRTGMGIGLVPK 243

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +++D      LV I  D IT   + Y  YP A +    L AFR+++ 
Sbjct: 244 VLMEDELGRGELVSI-GDAITSQRSYYLVYPPANETLPSLAAFRDWLL 290


>gi|294011961|ref|YP_003545421.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292675291|dbj|BAI96809.1| LysR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 313

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 128/289 (44%), Gaps = 10/289 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R F  VA  GSF  AA QL LS S ++R I+ LE  +G+ L  R  R + LT+
Sbjct: 1   MDRLDTMRAFVTVATVGSFAEAARQLRLSPSVVTRSIADLEDWLGLILLNRTTRSVRLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G        +V   +E  +  ++    +P G L++A  I  G+  +   +   L  +P 
Sbjct: 61  RGEIFLDSCRQVLEDIEGAERRVRGEDAEPRGALKVAAPILFGRLHVLPIITRILTKHPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L +++I ++ +  D A+R+   +  SS+   +L ++     A+  Y++    P 
Sbjct: 121 LTVHLTLSDRNIHLAEESVDVAVRVGD-LADSSMKAIRLGSVSRVLVASRRYVERRGMPK 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H++I F  L       F     V R   EPR   L VNS  + +     G GI
Sbjct: 180 APNDLSAHDIIAFESLDATNEWRFGPSGKVVR--VEPR---LTVNSADAAIAAAEAGLGI 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           +    Y V D+     LV ++         V   YP     +  L AF 
Sbjct: 235 SRTLSYQVMDSVLAGRLVPLLVSFTAEKLPVSAIYPARRIASTNLGAFI 283


>gi|241205475|ref|YP_002976571.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859365|gb|ACS57032.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 307

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 125/298 (41%), Gaps = 21/298 (7%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  V  +GSF+ AA  L ++Q ++SRQ++ LE     +L +R   GL+LT 
Sbjct: 1   MDIVSALRTFQRVVETGSFSAAAHDLDVTQPAVSRQVAALEGHFNTRLLHRTTSGLSLTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G ++  +   +   +E             SGK+R++    LG   L   L + L  +P 
Sbjct: 61  EGERMLPMALRILEAVEELGDAAGSDGTTASGKVRLSVPAPLGLY-LSERLGDLLAAHPK 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++LI   +  D+  +  D  +RL + +  SSL+ R++        A+P YL     P 
Sbjct: 120 LSVELIFREQGSDMIEERLDLEVRLGQ-VADSSLVCRRIGWTTAFLVASPAYLARRAAPR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQ------- 233
           + +E+  H  + +     +  E   W  +        RIS  L   + ++I +       
Sbjct: 179 APKEIKDHECLCYN----RAGEANTWSFSNGSEDISVRISPRLTACNAVAIHRAALAGAG 234

Query: 234 -YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +    I  +PD        LV +M+D       V   YP       ++K   +F+
Sbjct: 235 LAVLSH--IIAMPDIAA---GRLVPVMKDFQPSRLPVTVVYPSRRNMPLRVKTVLDFL 287


>gi|317054584|ref|YP_004118609.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952579|gb|ADU72053.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 297

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + +  F  VA +GSF+ AA Q    QS+IS+QI+ LE E+G+ L  R  R + LT
Sbjct: 1   MNNKLNAIATFIRVAEAGSFSAAARQTGSKQSAISQQIAALEAELGVVLLRRTTRAMALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++  +    +   ++  +++L+ +  +  G L I     +GQ LL   L  F   +P
Sbjct: 61  EAGAQYLQQIRPLMEAMDDIEVQLRPAHQQLQGNLHIQLPSGIGQLLLPHLL-RFQQEHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ + LD++  ++  +  D A+RL +    + +  R+L  +     A+P  L + +  
Sbjct: 120 GIRLDVALDDRLAEVISEGVDVALRLAEQ-PPAHMAARQLARVTTVLVASPALLGD-QPL 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L     + F  +          L + +  +  P  +  + N+   +MQ    G G
Sbjct: 178 REVAQLRDFPHVRFAGIAKDAPLT---LMSGEETLSIPVNTVFRANTSQVLMQAITAGLG 234

Query: 241 IA--LLPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I    LP          LV+++ +   P   +Y  +P+A     +++     +    +
Sbjct: 235 IGGLQLPLGAAALSAGTLVQVLPEYRLPDRYLYAVFPDARFIPQRVRTVVERLCAAIQ 292


>gi|262377589|ref|ZP_06070810.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145]
 gi|262307476|gb|EEY88618.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145]
          Length = 320

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T
Sbjct: 22  MQNKLEMMRIFCVAAESRNFKEAATQLGISPQVVTRAIKELEEQRGEILFYRSTRQIKIT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G +L +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   Y
Sbjct: 82  ADGERLAKQAHFAVGSIDALFVKDTKEKRDEMRGTVRLTVSSVLGRKLVVPALAEFATRY 141

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI +  +L +   D+  +  D  IR    +  +  + R+L  ++ ++   P  +     
Sbjct: 142 PDIVVDCVLTDSHSDVIDERIDIGIRFGF-LPDNRYVARELAKVNFYSVGTPELIDKVGM 200

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  I +LDK+ L    D   K    + W  T  R    P       +   +  Q  + G 
Sbjct: 201 PKKIIDLDKYPLTALFD--HKTGRYWPWTFTESRSF-TPSKPRFITDDLEAEFQAILAGV 257

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G   +P ++V     +  L++I+ +  +P + +Y   P+      +++A  +++  
Sbjct: 258 GFGHMPGFLVLPWLRSGKLIQILHEETSPVWRLYLYRPQRGPTPLRIRALFDYLVE 313


>gi|324999506|ref|ZP_08120618.1| LysR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 304

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 6/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D LR F  + R G  T AAE++ +  ++I R+IS LE  +G +LF +  RG T T  
Sbjct: 1   MNLDDLRYFLELTRYGRLTVAAERMGVEHTTIRRRISALERGLGQRLFDKTPRGWTPTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      +  + +  +  + +    P G +RI  T   G  ++   L      +P I
Sbjct: 61  GRRLLPYAQRIEAEADAARGAVTDDGHSPRGTVRIVATDGFGGAVIAPGLSRLRRAHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++L+  +  +D  +   D A+ + +P +        L    +  Y +P YL        
Sbjct: 121 QVELVTKSHLLDYGVGEFDLAVTIHRP-ERPGFRIEHLCDYDLRLYGSPAYLAARSRIRQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H+L+ F       + D   L + +    +  +   +  +  + ++    G G+ 
Sbjct: 180 PRDLADHDLVWFV----ASLLDLPELQSAEDIAAQANV-VFRTTNLFAQVEAAAGGVGLG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+P ++   +  L  ++ D ++   T +   P  L NT ++      I   AR
Sbjct: 235 LVPCFLAHGDDRLRPVLHDQVSARRTFWVITPNRLLNTERIAIVAEHIAETAR 287


>gi|312958131|ref|ZP_07772654.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311287562|gb|EFQ66120.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 316

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 119/297 (40%), Gaps = 10/297 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LRVF   AR  SFT AA +L  +Q +IS+QI  LE ++ I+LF R  RG+ LTE
Sbjct: 7   DVSLDLLRVFEAAARHRSFTAAAMELGTTQPAISQQIKRLEEQLAIRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L          +      + +        L++AT        L   L  F    P 
Sbjct: 67  AGAVLFEHVQGGLLAINEGLSAITQQDQHE--VLQVATDFAFAAYWLMPRLHRFHQANPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPI--QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           + + L+   ++        D A+        Q  SL    L    +    +P +LK+   
Sbjct: 125 VDVSLVTSERNHATLRSDIDVAVLFGDGRFKQGDSLW---LFNEEVFPVCSPQWLKDQAA 181

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PL++  L    L+           D++ +         P    L+ ++Y  ++Q  + G 
Sbjct: 182 PLTLHNLHDVPLLHLRQENNSRWFDWSGVFRELGISVAPTPGQLRFDNYTLLIQAAIAGQ 241

Query: 240 GIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+A+   ++V +      L R + + +   F  Y   P+  +    ++ F +++  +
Sbjct: 242 GVAIGWRHLVDNLLEQNWLCRPISNTVISRFGYYVVQPQRKRRGQLVERFVDWLVAE 298


>gi|327484057|gb|AEA78464.1| Transcriptional regulator, LysR family [Vibrio cholerae LMA3894-4]
          Length = 316

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 135/298 (45%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +    D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R+++ L LT
Sbjct: 10  LPMKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L    +E++ ++E  Q E++++     G++ I+  +   ++ L     EF  L+P
Sbjct: 70  KEGEQLFHSYAELFAQIERKQEEVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--- 177
           ++ +++ + +     S    D A+R   P   S  + RKL        A+          
Sbjct: 130 NVTLRMQVGSGLDYFSQRDLDIALRFG-PQPESDWVARKLARNPSVLCASAELAAKLSTV 188

Query: 178 -REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                  ++L +H L++    +P          +V + +     + L  +   +I+Q  +
Sbjct: 189 TPALAHPEQLKEHPLLSLNHKLPWIFHH----RSVAQKVQFIPTARLCSDELDTIVQATL 244

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G GIA LP  +++    +  L+ ++ +       VY  +P+      + +A  ++I 
Sbjct: 245 QGMGIARLPRGLMEPLLRSGQLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDYIM 302


>gi|45367|emb|CAA78445.1| ORF3 [Pseudomonas aeruginosa PAO1]
 gi|444426|prf||1907161A opdE upstream ORF 3
          Length = 249

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 113/243 (46%), Gaps = 1/243 (0%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L  F  VAR G+FT AA QL ++QS++S+ ISGLE  + I+L  R  R ++ T  G
Sbjct: 5   NLNDLLSFVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L       + ++E    EL     KPSG +RI     + + LL   L   LL YPDI+
Sbjct: 65  ERLLNAIGNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  ++    DI  D  D  +RL   I    +       + M   AAP Y     +P S 
Sbjct: 125 VEFDINYGFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRSP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  HN I         +  ++     DR +       L  N+  +I+   + G GIA 
Sbjct: 185 RDLVDHNCINMRMQSGGGLYAWD-FQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIAW 243

Query: 244 LPD 246
           LP+
Sbjct: 244 LPE 246


>gi|126456587|ref|YP_001074788.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|126230355|gb|ABN93768.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
          Length = 292

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 4   LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G   + T        L   L +     P + ++++
Sbjct: 64  AAVRQSLDALRAATADIRSRRA--NGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 121

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   ++AD AI              +L   H+    +P +     +     +L 
Sbjct: 122 TS-QDIDPQREHADVAILFGAG-DWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLL 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 180 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 239

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 240 LVDTPIAAGQLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 286


>gi|161523103|ref|YP_001586032.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160346656|gb|ABX19740.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
          Length = 329

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 126/288 (43%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQI  LE ++G+ LF R  R + LT+ G +  
Sbjct: 47  LLVFEAAARHESYTRAADELSLSQSAISRQIQTLEDQLGVPLFRREGRSVKLTDVGRRYF 106

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 107 AEVGGALGRIRGATLQ-AMSHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 165

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               +ID  +D  D AI +        L   +L    + A A+P    +     +     
Sbjct: 166 SRIGNIDFHVDDLDAAIAVGTG-DWPGLHAHRLYNEFLIAIASPDAPPDANGERAPAWAA 224

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           +  L+    +         W A       + RI    ++ S+  ++Q    G GI L+P 
Sbjct: 225 RQTLLG---VTSNQHAWAEWFAHYRLDHRQMRIGPSFELTSH--LIQAVRAGMGIGLVPK 279

Query: 247 YIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +V+D      LV I  D IT   + Y  YP   ++   L AFR+++ 
Sbjct: 280 VLVEDELSRNELVSI-GDAITSRRSYYLVYPPENESLPSLAAFRDWLM 326


>gi|126173602|ref|YP_001049751.1| DNA-binding transcriptional activator GcvA [Shewanella baltica
           OS155]
 gi|152999882|ref|YP_001365563.1| DNA-binding transcriptional activator GcvA [Shewanella baltica
           OS185]
 gi|160874507|ref|YP_001553823.1| DNA-binding transcriptional activator GcvA [Shewanella baltica
           OS195]
 gi|217974154|ref|YP_002358905.1| DNA-binding transcriptional activator GcvA [Shewanella baltica
           OS223]
 gi|304409473|ref|ZP_07391093.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307303831|ref|ZP_07583584.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|125996807|gb|ABN60882.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
 gi|151364500|gb|ABS07500.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
 gi|160860029|gb|ABX48563.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|217499289|gb|ACK47482.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
 gi|304351991|gb|EFM16389.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306912729|gb|EFN43152.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|315266745|gb|ADT93598.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 303

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 111/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L ++ +       L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFIQLADATDRLLARSA--IGSLTVSMSPSFAIQWLVPRLAKFSEKNPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI          L   KL    +    +P  L   +      
Sbjct: 126 RIKAVDTEASSLTDDVDVAIYYGLG-NWPGLRADKLRNEVLIPVCSPMLLNGPKPLSKPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKYHTLLH----DMNRHDWQAWFRQCGINDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV   ++V+      Y    +     GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWML 289


>gi|316932287|ref|YP_004107269.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315600001|gb|ADU42536.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           DX-1]
          Length = 298

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 126/299 (42%), Gaps = 11/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   +R F  V   GSF   A +L +  S++S+++  LE  +G++L  R  R + +T 
Sbjct: 6   DLDLSAVRAFQSVVLEGSFAGGARRLGVPLSTVSKRVRDLEARLGLRLIERTTRKMRVTA 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L    + +  + +T    + E+   P G LRIA    LGQ L+ G        +P+
Sbjct: 66  EGEALANHATRLLAEADTLLRAMTETGTAPRGHLRIAAPNLLGQLLIGGVAALCRARFPE 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++ +  +   D+  D  D  IR   P++ SS I RKL++  +   AAP  L       
Sbjct: 126 ITLEFVFTDAPPDLIEDRFDAVIRFG-PLEDSSQIARKLLSGAVRLVAAPG-LNGIDRIA 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
             +++    +I              W+   +      R    +   S L+     + G+G
Sbjct: 184 HPRDVANLPIIHVSPPWSHA-----WMFQRESDEVTVRFEPAISFPSMLAARDAVIAGAG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + +LP  +         LVR++ +   P   +Y  Y      T +L+AF + +    RD
Sbjct: 239 LTMLPGILAAPEINAGRLVRLLPEWTGPEKAMYVVYGAPDSITPRLRAFLDILTENLRD 297


>gi|156977509|ref|YP_001448415.1| transcriptional regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156529103|gb|ABU74188.1| hypothetical protein VIBHAR_06296 [Vibrio harveyi ATCC BAA-1116]
          Length = 295

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 138/301 (45%), Gaps = 17/301 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +L+ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVNSYIRVVEEGSFNAAARKLNTTSSAISKRIQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYERAKVQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLILD--NKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I++QLI     +  ++S+   D  I R  + + S S     L       YAAP YL+   
Sbjct: 121 IKLQLITTLPGQIPELSL---DLFISRELEQLNSLSFKASPLFEHKAQFYAAPSYLEKHG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P S++EL +HN++ +G+   + ++        +              +  ++      G
Sbjct: 178 TPHSVEELSQHNVLIWGEKPVREIK-------TNHGKRISLSGNFATTNPEALFHGAKRG 230

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI L  + ++K++     LV I+ D+     TVY  YP+      + + F +++  +  
Sbjct: 231 MGILLSNNVMIKEDLRSGALVPILPDITADEATVYAYYPKLDYQHTRTQLFLDYLKSRLE 290

Query: 296 D 296
           +
Sbjct: 291 E 291


>gi|54302445|ref|YP_132438.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46915867|emb|CAG22638.1| putative transcriptional regulator, LysR family [Photobacterium
           profundum SS9]
          Length = 295

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 133/299 (44%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  V ++GSF  AA Q  +  S++SR+I  LET+ G KL  RHA+ ++LT+ 
Sbjct: 1   MKLDDLDLFLTVVKAGSFASAARQRAIPTSTLSRRIQQLETDTGRKLLVRHAKDMSLTKD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +  S V+  +      + +     SG + I   I   ++ +     EF  L+P +
Sbjct: 61  GQLLVQQFSTVFDDIHLRLESVDKEKEDFSGVIVINAPIIPLKHQIGPLALEFAKLHPKV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QI   L N++        D A+R      +S  + ++L          P YL +  +   
Sbjct: 121 QICFQLGNQNNYHLRGDIDIALRFGHQ-PASDWVAKRLSHNPSVICTTPDYLNDKPDLTH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +++L++     P   + + +       +     + +Q +   +I +  V G GIA
Sbjct: 180 PNQLVRYDLLS-----PSPQQRWVFNHISGESVKFIPNARIQSDELDTIHRAAVAGLGIA 234

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            LP++  K   +N  L+++  D       V   YP+    + + +A  +FIF   + ++
Sbjct: 235 RLPEWYTKKSFENGELIQLFPDWQMEGSDVALLYPQRKLLSERTQALIDFIFEHWKPFE 293


>gi|83717382|ref|YP_438437.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651207|gb|ABC35271.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 454

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 122/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 150 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 209

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  + E    L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 210 NKLYSASQEFVSGLYDVIGSIRRLRHESTGLLRVAAPSGFSTAHLSSIAATFIHQHPQIE 269

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 270 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQMLVASPEYSRKHAVPRHP 328

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 329 DDLPGSHWIGHGGLANLS---YSVFGNEGRSVRVQTSGRLKVKSVLLAHQMALAGAGISA 385

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 386 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTSPRQASVRERLFL 432


>gi|269966161|ref|ZP_06180251.1| Transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
 gi|269829308|gb|EEZ83552.1| Transcriptional regulator, LysR family [Vibrio alginolyticus 40B]
          Length = 295

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 137/301 (45%), Gaps = 17/301 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS+++  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWIQSVKSYIRVVEEGSFNAAARKLNTTSSAISKRVQWLEDKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYQRAKSQLDSWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLILD--NKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I +QL      +  ++S+   D  I R  + + S S     L       YAAP YLK   
Sbjct: 121 ITLQLTTTLPGQLPELSL---DLFISRELEQLNSLSFKATALFEHKAQFYAAPSYLKKYG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P  +++L +HN++ +G+   + ++        +R             +  ++      G
Sbjct: 178 TPQCVEDLTEHNVLIWGEKPSREIK-------TNRGKRISLSGNFATTNPEALFHGAKRG 230

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI +  + ++KD+     LV I+ D+      VY  YP+      + K F +++  +  
Sbjct: 231 MGILMTNNVMIKDDLKSGALVPILPDITADKAIVYAYYPKLDYQHTRTKLFLDYLKSRLE 290

Query: 296 D 296
           +
Sbjct: 291 E 291


>gi|309783451|ref|ZP_07678156.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308917782|gb|EFP63474.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 298

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 130/300 (43%), Gaps = 9/300 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +F  +  +G+ ++AA  + +S+++IS +++ LE  VG +L  R  R + LTE 
Sbjct: 1   MDAHSLVLFVDIVEAGNLSNAARNMKMSRANISYRLTQLEKSVGQQLMRRTTRRVELTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++    +  +L   Q  +        G +R++     G  ++ G L EF   YPDI
Sbjct: 61  GQRLYQHGRVIRDELMAAQESVAVFGKTLQGSVRLSVPTGFGHMVMSGWLIEFKRQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+ DN+  D+  D  D A+R+       + +  +L  +     A+  Y      P++
Sbjct: 121 ALDLLFDNRVDDLLRDEVDVAVRVMSEPPQQT-VATELAQVRYVTCASTSYSDTHSMPVT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L +  LIT                     I  P    L   ++  + +  + G G+ 
Sbjct: 180 LEDLGRVPLITSAVAGRDLRVSAYQDEQRHELILHP---TLASENFQFLREAILAGLGVG 236

Query: 243 LLPDYIVKDNPNLVRI---MEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L+P+Y+V+ +    R+   + D     F   ++         T   +   NF+  KAR W
Sbjct: 237 LVPNYVVEQDLAEGRVSTTLNDWRLSVFGTRMFLLRMPGRYQTLATRTLINFVVEKARAW 296


>gi|15967040|ref|NP_387393.1| transcription regulator protein [Sinorhizobium meliloti 1021]
 gi|307302503|ref|ZP_07582260.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307316167|ref|ZP_07595611.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|15076313|emb|CAC47866.1| Transcription regulator LysR family [Sinorhizobium meliloti 1021]
 gi|306898007|gb|EFN28749.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306903173|gb|EFN33763.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 297

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 123/294 (41%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LE ++G+ LF R  + + L++ G
Sbjct: 10  DVTTLQAFECAARHGSFTQAAAELNLTQSAVSRQIKDLENQLGVLLFERVRQRVILSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + ++ E   +    S+   S  L IA+    G   L   L +FL  +P   
Sbjct: 70  QKFLPEVRRLLNQTEELMVRAMASARADS-SLSIASLPTFGSRWLVPRLPDFLRRHPGTV 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   ++  D      D AI   +P+ + + I   L +  +   A+P  L       + 
Sbjct: 129 VNIASRSEPFDFEEQNFDLAIHYGQPVWARA-ICNYLCSEVIVPAASPALLSVHPV-EAP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ++    L+          + F      +    +      + + +  +++    G G AL
Sbjct: 187 ADIGGAPLLHLATRPKLWAQWFE----ANGVEQDGAYRGNRFDQFSMVIEAATAGLGFAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++       L  +++  +    + Y   PE        +AFR +I  + 
Sbjct: 243 LPRYLIEQELTAGTLRIVLDRPMQTENSYYLAIPEGKLENPISRAFREWITEQV 296


>gi|300312018|ref|YP_003776110.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300074803|gb|ADJ64202.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 131/296 (44%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             ++  LRVF  + R+GSF  AA QL L+ S+ S  +  LE  +  +L YR +R ++ T 
Sbjct: 6   HIEFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLATQLLYRSSRAISPTA 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS+L     + + ++     +L  S+    G+LRI    D    L++  + EF+   P 
Sbjct: 66  AGSELAARLEQGFEQIGAALSQLDSSAAGSLGELRINVFADAAHLLIEPAIPEFVRQCPK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +++D+K IDI  +  D  IR    +    +           A AAP YL     PL
Sbjct: 126 VRLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAAAPAYLDRHGRPL 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL-QVNSYLSIMQYCVLGSG 240
           ++Q+L +H  +    L+      + W     +     R+  L  +N+  + +     G G
Sbjct: 186 TLQDLQQHTCL---QLLLGDNSSYQWEFGRGKHRQRIRVPGLVTINNTAATIAAAKAGVG 242

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA L +  +    +  +L  I+E+   PS   +  Y         L+   + I L+
Sbjct: 243 IAYLLEGRISKEIEEGSLETILEEWAAPSEPFHMYYSSRRHAHPALRKLIDIIRLQ 298


>gi|302186438|ref|ZP_07263111.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae 642]
          Length = 316

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 112/295 (37%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LT+
Sbjct: 7   DVSLDLLRAFEVAARLRSFTAAALELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  + PD
Sbjct: 67  AGEVLFSHVQAGLQSIDSGLIAITEQHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  L   + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESHWLFSEEVFPVCSPQLLAGRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNDALRDFPLLHLRGESINHWFDWAGVFRALDIPQAPAPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWRHLVDDLLDQGLLCRPIAGAAISGQGYYVVLPQRKRRVQIVQQFVDWLASE 298


>gi|15597643|ref|NP_251137.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107101898|ref|ZP_01365816.1| hypothetical protein PaerPA_01002943 [Pseudomonas aeruginosa PACS2]
 gi|116050394|ref|YP_790788.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891571|ref|YP_002440438.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235454|ref|ZP_04928777.1| hypothetical protein PACG_01367 [Pseudomonas aeruginosa C3719]
 gi|254240883|ref|ZP_04934205.1| hypothetical protein PA2G_01558 [Pseudomonas aeruginosa 2192]
 gi|296389140|ref|ZP_06878615.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313110634|ref|ZP_07796509.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9948495|gb|AAG05835.1|AE004672_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115585615|gb|ABJ11630.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167385|gb|EAZ52896.1| hypothetical protein PACG_01367 [Pseudomonas aeruginosa C3719]
 gi|126194261|gb|EAZ58324.1| hypothetical protein PA2G_01558 [Pseudomonas aeruginosa 2192]
 gi|218771797|emb|CAW27574.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310883011|gb|EFQ41605.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 307

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/310 (24%), Positives = 127/310 (40%), Gaps = 28/310 (9%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + L +F   A +GSF+  AE+L  + S++++ ++ LE E+G +LF R  R L LTE
Sbjct: 1   MDKLNALAMFVATAETGSFSRGAERLGKTPSALTKAVAHLEAELGARLFERTTRSLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        +    L T   E++    +  G+LR+A         LQ     FL  +P 
Sbjct: 61  AGQIYLEAARQSLETLRTAGQEIELLESELRGELRLAAPPSFAAAFLQQACASFLEAHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++ LD   +D+S    D  +R   PI    L+ R L    +   A+P YL     P 
Sbjct: 121 ISLRVDLDETFLDLSEGGYDLGLR-DGPIDLPGLVARPLAPNQIVLCASPAYLARQPAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL---------SIM 232
             ++ ++H  + F          +       + I +PR   L  ++Y            +
Sbjct: 180 GPEDFERHAWLVFQHPSLNQNFWWMERDGARQRIDQPR-PRLASDNYDFLLAHLLAGLGL 238

Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKA 285
           Q+C         P + V        LVR++ D           ++  YP   +NT K++A
Sbjct: 239 QFC---------PQWSVAPLLGEGRLVRLLGDYHFDPGPFGPSIHVLYPGHRRNTRKVRA 289

Query: 286 FRNFIFLKAR 295
           F   +    +
Sbjct: 290 FLEHLRASLQ 299


>gi|156934136|ref|YP_001438052.1| hypothetical protein ESA_01963 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532390|gb|ABU77216.1| hypothetical protein ESA_01963 [Cronobacter sakazakii ATCC BAA-894]
          Length = 301

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 121/296 (40%), Gaps = 9/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +    +  V   G F  A+  L   +S +SR+++GLE ++G++L  R +R   +T
Sbjct: 1   MQHDLNDYFYYAEVVSHGGFAAASRALKQPKSKLSRRVAGLEAQLGVRLIERSSRRFRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +     +  + E  Q  + ++  +P G +R +        ++Q  L  F+  YP
Sbjct: 61  DIGQAFYDQCRAMLLEAEKAQAVIAQARKEPQGMVRFSCPTG-MVEIIQAMLPAFMHRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + +Q+I  ++ +D+  +  D A+R+R  +   + LI R L T +    A+P        
Sbjct: 120 QVNLQIIAIDRPVDLIEERVDVALRVRTELTSDAELIMRTLGTSNRILVASPQLASKLNG 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +I  L  H  +   D   +    +       +            + + ++    + G 
Sbjct: 180 --AIDTLACHPTLGTSDEPGEI--SWALEHEQGKRCLIRHQPRFSCSDFTAVRMAAIEGL 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIALLPD++        +LV +          V+  +         ++AF + +  
Sbjct: 236 GIALLPDHVCAKALKTGDLVHVYRGWQGQRGIVHLVFTTRRGLPPAVRAFIDHLAA 291


>gi|255318542|ref|ZP_05359775.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262378767|ref|ZP_06071924.1| LysR family transcriptional regulator [Acinetobacter radioresistens
           SH164]
 gi|255304534|gb|EET83718.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262300052|gb|EEY87964.1| LysR family transcriptional regulator [Acinetobacter radioresistens
           SH164]
          Length = 320

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T
Sbjct: 22  MQNKLEMMRIFCVAAESRNFKEAATQLGISPQLVTRAIKELEEQRGEILFYRSTRQIKIT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G +L +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   Y
Sbjct: 82  ADGERLAKQARFAVGSIDALLVKDTKEKRDEMRGTVRLTVSSVLGRKLVVPALAEFATRY 141

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI +  +L +   D+  +  D  IR    +  +  + R+L  ++ ++   P  +     
Sbjct: 142 PDIVVDCVLTDSHSDVIDERIDIGIRFGF-LPDNRYVARELAKVNFYSVGTPELIDKVGM 200

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  I +LDK+ L    D   K    + W  T  R    P       +   +  Q  + G 
Sbjct: 201 PKKIIDLDKYPLTALFD--HKTGRYWPWTFTESRSF-TPSKPRFITDDLEAEFQAILAGV 257

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G   +P ++V     +  L++I+ +  +P + +Y   P+      +++A  +++  
Sbjct: 258 GFGHMPGFLVLPWLRSGKLIQILHEETSPVWRLYLYRPQRGPTPLRIRALFDYLAE 313


>gi|89052618|ref|YP_508069.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88862167|gb|ABD53044.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 295

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 126/288 (43%), Gaps = 10/288 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DW  LR    VA +GS + AA QL  +Q ++ RQI   E  +G  LF RHARGLT T 
Sbjct: 4   DLDWTLLRAVLAVADTGSLSGAAAQLTRTQPTLGRQIKAAEQALGQPLFTRHARGLTPTP 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L     ++    +   +     S   SG++R+  ++ +  ++L G L +    +P+
Sbjct: 64  FCETLLPAAQQMNDAAKAVSVLAAGQSPDTSGRVRLTASVFVTAHILPGILADIREAHPN 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++  +   ++    AD A+R+ +P Q   +I + L  + +  YA+  Y+     P 
Sbjct: 124 IALDIVASDTTENLLFHEADIALRMYRPTQ-LDMIAKHLGDLPLGLYASETYIARHGTPH 182

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S  +L  H ++ +   DLI + M +     T               +  ++   +   G 
Sbjct: 183 SADDLKHHQMVGYDRSDLILRGMREMGMEVT-------RAFFTTCTDDQVAYWNFVAAGC 235

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           GI +    + +  P + RI+ D+  P   V+      L++  ++ A  
Sbjct: 236 GIGIGQTLVAERTPGMRRILPDLRLPVLPVWLTAHPGLRHQPRVHAVW 283


>gi|237807263|ref|YP_002891703.1| DNA-binding transcriptional activator GcvA [Tolumonas auensis DSM
           9187]
 gi|237499524|gb|ACQ92117.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 302

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 116/291 (39%), Gaps = 12/291 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AAE+L ++Q++IS QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALKAFEAAARHLSFTRAAEELFVTQAAISHQIKTLEEFLGLKLFLRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    ++  +      L   S    G L +          L   L  F  L+P+I +
Sbjct: 68  GYYQDIRSIFSAVCEATERLIARSA--KGTLTVTMQPSFAIQWLVPRLMLFSQLHPEIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D    +D  D AI          L   KL + +     AP  L+  +     +
Sbjct: 126 RIKAVDQDDGTLVDDVDIAIYYGDG-HWPELQLYKLHSEYRIPVCAPSLLQG-KTLQVPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+  G       +   WL      I       +  +    ++Q  VLG G+AL 
Sbjct: 184 DLAGFTLLHDGSR----RDWGRWLHDTGVSIPNAGQGPI-FSHSAMVLQAAVLGQGVALG 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + +       L+  +   +      Y          GK+ AFR++I  
Sbjct: 239 HSLLARPEIRAGRLICPLPQTLVSHNAYYLVMAPGHDTLGKVAAFRDWIVA 289


>gi|169632900|ref|YP_001706636.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169795192|ref|YP_001712985.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|184158957|ref|YP_001847296.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213158144|ref|YP_002320195.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215482740|ref|YP_002324938.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|239501155|ref|ZP_04660465.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB900]
 gi|301346847|ref|ZP_07227588.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301511126|ref|ZP_07236363.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301596421|ref|ZP_07241429.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332857073|ref|ZP_08436379.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332870011|ref|ZP_08438987.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332874738|ref|ZP_08442608.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|169148119|emb|CAM85982.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|169151692|emb|CAP00482.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii]
 gi|183210551|gb|ACC57949.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213057304|gb|ACJ42206.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986545|gb|ACJ56844.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|322508939|gb|ADX04393.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323518925|gb|ADX93306.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332726888|gb|EGJ58402.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332732511|gb|EGJ63762.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332736999|gb|EGJ67956.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 309

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 125/292 (42%), Gaps = 7/292 (2%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMDVILLHRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  +I + E      G LRIATT DL    +   L  ++  +  
Sbjct: 62  AGQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHIIPALSHWMSAHRG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +   + ++ ID+  +  D A+R+       S     +  +     A+P YL      L
Sbjct: 122 LSVHFEVGHRYIDLIEERIDIAVRMSSTAVEESDSVIPMAFVDQILVASPSYLNQTSPIL 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L+ H L++   +      +F   A     +     S LQ N+       C  G GI
Sbjct: 182 HPNDLNNHELLSINAMNDSRSFNFQH-AKTGEKLNIEMASRLQSNNLQVAKALCQQGHGI 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +     +    N +L+ I+ D   P+FT+Y    +  +   K++     +
Sbjct: 241 ARILYLDAQKELKNGSLIEILPDWKLPAFTLYAEIAKHDQQPMKIQRCVEAL 292


>gi|76819569|ref|YP_336844.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b]
 gi|76584042|gb|ABA53516.1| LysR family regulatory protein [Burkholderia pseudomallei 1710b]
          Length = 453

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 122/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 149 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 208

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 209 NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 268

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 269 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYARRHAVPRHP 327

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++     +R +       L+V S L   Q  + G+GI+ 
Sbjct: 328 DDLPGSHWIGHGGLANLS---YSVFGNEERSVRIQTPGRLKVKSVLLAHQMALAGAGISA 384

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 385 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 431


>gi|317406295|gb|EFV86534.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 308

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 134/298 (44%), Gaps = 8/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  +G+ + AA +L ++++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDTKALTLLVEILDAGNLSEAARRLKMTRANVSYHLTQLERAVGMQLLRRTTRHVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL++    +  +L   +  ++     P GK+R++     GQ ++   L EF   YPDI
Sbjct: 61  GLKLYQHGRSIQDELAAAREAVETLGKTPQGKVRLSVPSGYGQFVMTPWLLEFKRAYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N   D+  D  D A+R+       +L+ R+L  +   A A+P ++++   P  
Sbjct: 121 VLDVLFENSVDDLLRDEVDIAVRIMSEPPH-NLVARELGQVRYVACASPAFVRDRGLPDK 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +  +I+   +I + +    +     R         +   +Y  +    + G GI 
Sbjct: 180 PAELARLPVIS-AAVIGRPLRLSAYYGGQPRQ-HVVLEPTIISRNYAFLRDAMLAGLGIG 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++PDY+V D+    +L+  +           +Y  Y     +   +     FI  +A+
Sbjct: 238 VVPDYVVHDDIARGDLIAALPHWRLSIFGRAMYMLYMPNRHHPRAIAMMIEFIQQRAQ 295


>gi|117619067|ref|YP_858201.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560474|gb|ABK37422.1| LysR-family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 302

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 121/292 (41%), Gaps = 6/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+   R+F  V   GSF  A++ L +  S+ISR I+ LE  + ++L  R  R + LT+ 
Sbjct: 5   LDFTSSRIFIAVVEQGSFVGASKTLEIPTSNISRSIAQLEERLSLQLIERSTRHMKLTQA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   LE T+ EL    ++  G LR+    + G  LL   + +F   +P+I
Sbjct: 65  GQLLYTRVKPLLESLEQTEAELTSQQIQLKGPLRLCIPNEAGPRLLGTAIADFACQHPEI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I  I +    +   +  D A+ + R  +  S  I   L TI      +P  ++ C  P 
Sbjct: 125 KISCITNLSGFETLREDLDIAVIIHRGKLDDSDYIASHLTTIPCTVVGSPALIQQCGLPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     IT    +      F   +     +        +VNS    ++  + G G 
Sbjct: 185 HTTQLQDLPCITTVSALKGMPWQFTLPSAEFSTVQV--NEHYRVNSGELALKAAIAGVGF 242

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+L     +   D+ NLV I  ++      ++  Y        K + F +FI
Sbjct: 243 AILAKVSCQEFIDDGNLVEIEFELPAAPLQLFAVYANRQYLPAKTRVFIDFI 294


>gi|91778015|ref|YP_553223.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|296157931|ref|ZP_06840764.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|91690675|gb|ABE33873.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
 gi|295891699|gb|EFG71484.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 300

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 125/297 (42%), Gaps = 9/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L  F  VAR+G F  AA   ++S SS+S  +  LE ++G++L  R  R +  TE 
Sbjct: 1   MELNDLAAFVSVARAGGFRDAARIGNVSASSLSIAVRRLEAKLGLRLLNRTTRSVAPTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    + ++ ++E     L     KP+G L++       + +L G +  FL  YPDI
Sbjct: 61  GLRLIEKLTPLFSEMEAALDVLNVFRDKPAGTLKLNVPSSAARIVLPGIVAAFLKAYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCREP 180
           ++++++++  +D+     D  IR  + ++   +I   +          AAP YL     P
Sbjct: 121 RVEVVVEDGFVDVLSIGCDAGIRYDERLEQD-MIAIPIGPRVQRFATAAAPGYLDVHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLG 238
               EL  H  +  G      M  + +    +     P    L     +    +   V G
Sbjct: 180 GHPGELLSHACLR-GQFAGGAMPIWYFERDGEVLQLNPSGPLLVRPGAAIDLAVSAAVAG 238

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G+  L + +++   D+  L  I+E         +  YP        L+AF +F+  
Sbjct: 239 VGVIHLFEDMLRPHLDSGALEPILEPWWQRFSGPFLYYPGRRHLPAPLRAFVDFLKA 295


>gi|227823802|ref|YP_002827775.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
 gi|227342804|gb|ACP27022.1| transcriptional regulator, LysR family [Sinorhizobium fredii
           NGR234]
          Length = 297

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 122/294 (41%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR GSFT AA +L+L+QS++SRQI  LET++G+ LF R  + + L++ G
Sbjct: 10  DVTTLQAFECAARHGSFTQAAAELNLTQSAVSRQIKDLETQLGVLLFERVRQRVILSDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       + H+ E   +    S+   S  L +A+    G   L   L +FL  +P   
Sbjct: 70  QKFLPEVRRLLHQTEELMVRAMASARADS-SLSVASLPTFGSRWLVPRLPDFLRRFPGTV 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   +   D      D AI   +P+ + +     L +  +   A+P  L         
Sbjct: 129 LNLASRSAPFDFDEQNFDLAIHYGQPVWARATCSY-LCSEVIVPVASPGLLAANSV-EGP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++    L+          + F+     +           + + +  +++    G G AL
Sbjct: 187 EDIGGGPLLHLATRPKLWAQWFD----ANGVDNHGAYRGNRFDQFSMVIEAATAGLGFAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++       L  +++  +    + Y   PE        +AFR +I  + 
Sbjct: 243 LPRYLIEQELTAGTLRIVLDRPMQTENSYYLVVPEGKLENPISRAFREWISEQV 296


>gi|170719261|ref|YP_001746949.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757264|gb|ACA70580.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 295

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLSAAKRLNTTHSTVARHIESIEKSLGTPLFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ ++   P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQAIT-PLGKIRLGVTEGIGIMFFTPRMNALFDRYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P     LI RKL    +  YA+  YL       +
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERPSAD-LLITRKLTDYRLALYASQAYLDRAPPLRN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ I + D +    E    L  ++     P +   +  S ++       G GIA
Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRAPNV-AFRSTSVIAQQTAARAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LP+Y+ + +P LVRI+    T   + + C    L  + +L+   +++  
Sbjct: 235 VLPNYMARHDPTLVRILP-SETIQRSYWICTRRELHKSVRLRVVWDYLLA 283


>gi|229523512|ref|ZP_04412917.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229337093|gb|EEO02110.1| transcriptional regulator LysR family [Vibrio cholerae bv. albensis
           VL426]
          Length = 316

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 135/298 (45%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +    D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R+++ L LT
Sbjct: 10  LPMKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L    +E++ ++E  Q E++++     G++ I+  +   ++ L     EF  L+P
Sbjct: 70  KEGEQLFHSYAELFAQIERKQEEVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC--- 177
           ++ +++ + +     S    D A+R   P   S  + RKL        A+          
Sbjct: 130 NVTLRMQVGSGLDYFSQRDLDIALRFG-PQPESDWVARKLARNPSVLCASAELAAKLSTV 188

Query: 178 -REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                  ++L +H L++    +P          +V + +     + L  +   +I+Q  +
Sbjct: 189 TPALAHPEQLKEHPLLSLNHKLPWIFHH----PSVAQKVQFIPTARLCSDELDTIVQATL 244

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G GIA LP  +++    +  L+ ++ +       VY  +P+      + +A  ++I 
Sbjct: 245 QGMGIARLPRGLMEPLLRSGQLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDYIM 302


>gi|182678458|ref|YP_001832604.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634341|gb|ACB95115.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 301

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 126/297 (42%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D +    F  V   G F  A   L   +S +SR+I+GLE  +G++L  R +R   +T
Sbjct: 1   MKIDLNDYAYFAEVVAHGGFAAAGRALREPKSKLSRRIAGLEDRLGLRLIERSSRRFRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +     +  + E  +  + ++  +P G++R +    + +  + G +  FL+ YP
Sbjct: 61  DTGQAFYERCRAMLAEAEQAEALVMQAQAEPHGRIRFSCPTGMLEP-ISGLISSFLVRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +++QL+  ++ +++  +  D A+R+R  +   ++L  R L        A+P        
Sbjct: 120 KVRLQLVATDRALNLIEERIDLALRVRGSLTSDAALTMRSLGLSTRILVASPLIASQVG- 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLG 238
             SI++L     +   D              + + I  EPR+ C       ++    + G
Sbjct: 179 --SIEQLALFPALATNDTADDLEWHLETEDGLKQVIRVEPRMGC---EDMATVRAAAIDG 233

Query: 239 SGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G+A+LPD++     +   LVR++         V+  +         ++A  + +  
Sbjct: 234 IGVAILPDHVCLDALEAGRLVRVLPAWRGLQGIVHLVFTTRRGLPPAVRALIDHLAA 290


>gi|260775779|ref|ZP_05884675.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608195|gb|EEX34364.1| transcriptional regulator LysR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 303

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 139/298 (46%), Gaps = 8/298 (2%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+F    + L +F++VA SGSF  AA+++ L +SS+S++I+ LE  + ++L  R  R L+
Sbjct: 1   MAFHKQLENLYLFHLVALSGSFQGAADKVGLPRSSVSKRIAKLEQTLNLRLLERSTRKLS 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT+ G +L + T  +   L  T+   ++   +P GK+RI  +  +   LL  ++      
Sbjct: 61  LTQSGHELLKSTEPLQQVLHHTETLSEQVHARPQGKVRIGCSTLMAHRLLIPHIHALSDT 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YPDI     L ++ +D+  ++ D AIR+   +  SSL+ R++       YA+P YL    
Sbjct: 121 YPDICFDFNLTDEVVDLIDNHVDIAIRIGH-LPDSSLLARQIGEKTFGWYASPAYLAQNG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P S + L  H  + F +     ++++ ++              +  +    ++Q   LG
Sbjct: 180 APESPESLLHHRCLVFKNKA-VTLDNWVFVHPNGGVNAINVTPAMISDDARGLVQLATLG 238

Query: 239 SGIALL-PDYIVKD--NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFL 292
            GI ++ P +I ++  +  L  ++ D   P    ++         +  +      +  
Sbjct: 239 QGIIMVDPAFIDQELRSNELAPVLTDYTHPDKQPIHLVCLGKKGRSRAVTCVWEALSE 296


>gi|170700132|ref|ZP_02891152.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134952|gb|EDT03260.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 328

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 118/291 (40%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE+ +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEQQSFRRAAHHLGVSNALVTRSIAMLESHLNTRLIHRTTRNLSLTEAGLRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  +  +P+G LR+  +  L    L   +  F   YP++++QL 
Sbjct: 67  DGCRALLEEFDHLEASVAHAVREPAGTLRVVASGLLSPLALTPLVTSFRHRYPELRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  I     +  + +LI   L      A AAP YL+   EP +  +L
Sbjct: 127 VAEGPLDVLDSGYDVGIVTGNRLDGNPTLIGHALPAAPFVACAAPAYLERRGEPRAPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +       +    +  +                VN    +    + GSGI +LP+
Sbjct: 187 PGHDWVALAP--HQHAPAWRLVGHDGATHSITLRPTCTVNQLALVHAAALAGSGIVVLPE 244

Query: 247 YIVKDN---PNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             V D      LVR++       P   +   YP       + ++F      
Sbjct: 245 PCVADALATGTLVRLLPAYRIDDPDAQLSLVYPNRQYVPARTRSFIEHALE 295


>gi|167907710|ref|ZP_02494915.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 315

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 119/288 (41%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    +              G +RI+ +  +G  +L   +      +P + I
Sbjct: 67  ALRAHAEAMESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHPALTI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+  D+    AD A+R+ +P Q+  LI R +  I +  +A   YL  C  P    
Sbjct: 127 ELALTNRVQDLLRREADIAVRMTRPGQTQ-LIARHIGGIELGLHAHRDYLARCGTPRDAG 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H LI          +        DR         L+ +S L+ +     G+GI   
Sbjct: 186 ELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----ALRTDSDLAQLALIRCGAGIGAC 240

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + K +P LVR++         ++    E L+ + + +A  + +  
Sbjct: 241 QAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAE 288


>gi|300691067|ref|YP_003752062.1| transcriptional regulator, lysR family [Ralstonia solanacearum
           PSI07]
 gi|299078127|emb|CBJ50770.1| putative transcriptional regulator, LysR family [Ralstonia
           solanacearum PSI07]
          Length = 322

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 116/292 (39%), Gaps = 6/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR+   +A +G+ + AA QL    ++ S  +  +E+E+G +LF R  R +  TE G 
Sbjct: 4   LDDLRLLVRIADAGNLSAAARQLGWLPATASAALKRVESELGARLFERTTRSMRPTEAGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      +    L+     L +   + +G +RIA T DLG+NLL+  L  F   +P +++
Sbjct: 64  RYLGYARQALEALDEGAESLGQDRTELAGPIRIAATSDLGRNLLRPWLDTFCDEHPGVRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+L ++  D+  +  D A+R    +Q S+L++R L +       AP Y +    P    
Sbjct: 124 TLMLGDRLADLMREDLDFALRYGH-LQDSALVRRPLASHPRVIVGAPSYFRRHSRPTHPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H  +               L     P+        Q +    +  + + G G+A  
Sbjct: 183 ALRDHRCLILLRNGEPVTRW--QLTHASGPVPVDVRGDFQCDDGAVVRDWAIAGRGLAFK 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               V  +     L   +         +            +L A  +F+  +
Sbjct: 241 AWLDVAQDVYAGRLEVALPAWAHAPTPLQLVSLARRHRPVRLTACADFLAAR 292


>gi|237801332|ref|ZP_04589793.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024191|gb|EGI04248.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 319

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 117/286 (40%), Gaps = 6/286 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  + + L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECRGFAPASRKLGIPKSKLSRRIAGLEERLSVTLIHRSTRKFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +Q S  +P G++ I+    +    +  ++  F+  +P +
Sbjct: 62  GRDYYGHCVAMLVEAEAAEEAIQRSKSEPQGRVVISCPPAMAAMGINESIARFMAAHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+ +   N+ +D   +  D A+R+R  P++   L+ ++L        A P          
Sbjct: 122 QVNIESTNRRVDPLAENIDIALRVRFPPLEDDGLVVKQLGHSAQRLVAHPDLAALIPAGA 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  EL +   +      P+              +    +  L  +   +I+Q  + G G+
Sbjct: 182 SFDELARLPSLDVPSSTPEHRWLLE--NGPGHYVEVRHVPRLVSSDLDAILQAVLQGVGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           A LP+ +V++      +V + +        ++  +         ++
Sbjct: 240 AQLPEILVREALQQGRVVELFDAHRPKCGILHAVFVSRRGLLPAVR 285


>gi|217422023|ref|ZP_03453526.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217394254|gb|EEC34273.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 315

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 119/288 (41%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    +              G +RI+ +  +G  +L   +      +P + I
Sbjct: 67  ALRAHAEAMESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHPALTI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+  D+    AD A+R+ +P Q+  LI R +  I +  +A   YL  C  P    
Sbjct: 127 ELALTNRVQDLLRREADIAVRMTRPGQTQ-LIARHIGGIELGLHAHRDYLARCGTPRDAG 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H LI          +        DR         L+ +S L+ +     G+GI   
Sbjct: 186 ELVRHALIGHDRPTAFIRQIAESFPGFDRGAF-----ALRTDSDLAQLALIRCGAGIGAC 240

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + K +P LVR++         ++    E L+ + + +A  + +  
Sbjct: 241 QAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAE 288


>gi|118593037|ref|ZP_01550424.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118434344|gb|EAV40998.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 302

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 126/289 (43%), Gaps = 9/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L+VF  V   G F  AA++L L+ S +S  +S +E ++G+ L  R  R +  TEQG  
Sbjct: 8   NDLQVFLTVLNEGGFRAAAKRLGLAPSKVSTTVSRIEKQLGVPLLLRTTRSVRATEQGQA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      + H+++   +E   S+    G+L++     +  ++L   + E+   +P ++++
Sbjct: 68  LASRIQPLMHEMDAACLETLHSADFVKGRLKLNVPGAVMPDILPPLIVEYQRRHPTVEVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCREPLSI 183
           ++++N  +DI     D  IR    ++   +I   +      +   AAP Y++    P + 
Sbjct: 128 IVMENSLVDIIEAGCDAGIRYGASVEKD-MISVPIGPRVQEIALAAAPSYIEKYGLPETP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSG-I 241
            +L  H  I +G L    +  +      +    +P     L VN+  + + Y   G G I
Sbjct: 187 HQLTDHYAIRYG-LNGGPLIPWKLQNGDETANVKPLTRLILSVNALNTGLSYAQAGLGII 245

Query: 242 ALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
               +++  D     LV ++ D           YP     +  L+AF +
Sbjct: 246 GTFRNWLEDDLRAGTLVPVLPDWWAEEEGPRLYYPS-RFTSTPLRAFID 293


>gi|188533894|ref|YP_001907691.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188028936|emb|CAO96802.1| LysR-family transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 303

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 123/293 (41%), Gaps = 6/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D+  L++F  V    SF  A++ L +  S++SR +S LE ++ ++L  R  R + LT 
Sbjct: 4   ALDFATLKIFVAVVERESFVGASKALEMPTSNVSRCVSQLEKKLNLQLIERSTRHMKLTP 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   YPD
Sbjct: 64  SGQLLYTRAKPLLEMLEQTETELTLRQIQLKGPLRICIPNEIGPALLSSAIADFACKYPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  I +   ++   D  D AI + R  +     I R LVTI     AAP  ++    P
Sbjct: 124 VEISCITNLAGLESLRDDLDLAIIVTRGQMDDCDCIARHLVTIPCTIVAAPSVIQRYGTP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             IQ+ +    IT  + +      + ++               +VNS     +  V G G
Sbjct: 184 SHIQQFEDLPCITTVNALKGA--PWQFVNIKGGFESIKVKGHYRVNSGEMAGRAAVSGVG 241

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            A+L     +    N  L+ +          ++  Y        + + F +FI
Sbjct: 242 FAILSKQACQPYISNGRLIEVELPQQAAPLQLFALYSNGRYLPARTRTFIDFI 294


>gi|221197379|ref|ZP_03570426.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221204053|ref|ZP_03577071.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176219|gb|EEE08648.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183933|gb|EEE16333.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 297

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 121/293 (41%), Gaps = 15/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+
Sbjct: 11  LNALRAFEVAARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGA 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     H +      L +        L I+TT       L   L +F   +PDI +
Sbjct: 71  AYFSDVQRALHAIADATDRLVKRRA----TLTISTTPSFASKWLIPRLAQFTDAHPDIDV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D +      D  D AIR  KP     L    L  + + A  +P  L     P S +
Sbjct: 127 RVIADQQLATFRHDGVDLAIRYGKPPFGKHLAAHALFPLDVCAVCSPALLAA---PASPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H L+     +        ++A +  P+       L+ N     +   V G GIAL 
Sbjct: 184 ALAGHVLLHDAHDLWPA-----FIAALPEPVDVDPHKGLRFNQTSLAIDAAVAGQGIALA 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D +V+ +     L +  +     S   Y  YP   ++   +   R+++   A
Sbjct: 239 TDPLVERDVAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDAIAVMRDWMIGAA 291


>gi|262369004|ref|ZP_06062333.1| LysR family transcriptional regulator [Acinetobacter johnsonii
           SH046]
 gi|262316682|gb|EEY97720.1| LysR family transcriptional regulator [Acinetobacter johnsonii
           SH046]
          Length = 320

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T
Sbjct: 22  MQNKLEMMRIFCVAAESRNFKEAATQLGISPQLVTRAIKELEEQRGEILFYRSTRQIKIT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G +L +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   Y
Sbjct: 82  ADGERLAKQARFAVGSIDALLVKDTKEKRDEMRGTVRLTVSSVLGRKLVVPALAEFATRY 141

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI +  +L +   D+  +  D  IR    +  +  + R+L  ++ ++   P  +     
Sbjct: 142 PDIVVDCVLTDSHSDVIDERIDIGIRFGF-LPDNRYVARELAKVNFYSVGTPELIDKVGM 200

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  I +LDK+ L    D   K    + W  T  R    P       +   +  Q  + G 
Sbjct: 201 PKKIIDLDKYPLTALFD--HKTGRYWPWTFTESRSF-TPSKPRFITDDLEAEFQAILAGV 257

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G   +P ++V     +  L++I+ +  +P + +Y   P+      +++A  +++  
Sbjct: 258 GFGHMPGFLVLPWLRSGKLIQILHEETSPVWRLYLYRPQRGPTPLRIRALFDYLAE 313


>gi|239814792|ref|YP_002943702.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801369|gb|ACS18436.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 315

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 125/302 (41%), Gaps = 9/302 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +   GS   A+  L +  S +++++  LE  +G +LF R  R L++T +
Sbjct: 1   MDRGDLELVLAIRDQGSLAGASATLDVVPSVVTKRLGALEARLGQRLFERTTRRLSVTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +      +       + EL E   +  G +R+A T   G+  L   L  F   +P +
Sbjct: 61  GEAVCLHARALLEGFAALESELGERQNELVGTIRLAATFGFGRRWLGPALASFQARHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQ--SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           QI+L+L  +  D+  +  D A+ L    Q  ++  + R++        A+P Y++    P
Sbjct: 121 QIELLLTERLPDLGAEGYDGALWLWAVQQRRAADWVTRRIARNQRVLAASPSYMERRGLP 180

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCV 236
            ++  L  H+ +     G++       +      D      R+   L  NS   +  +C+
Sbjct: 181 ANVDALAAHDCLVARENGEVNQHQFALWTLRHARDGSTARVRVQGPLTSNSGEMVRDWCL 240

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G GI L   + +     +  LVR++     P   +++  P   K   +++   + +  +
Sbjct: 241 AGHGIMLRSLWDIAPQLASGELVRVLPHYAMPDADIHWIAPWRPKTPRRVRLLLDHLAEQ 300

Query: 294 AR 295
            R
Sbjct: 301 FR 302


>gi|167722694|ref|ZP_02405930.1| LysR family regulatory protein [Burkholderia pseudomallei DM98]
 gi|167741662|ref|ZP_02414436.1| LysR family regulatory protein [Burkholderia pseudomallei 14]
 gi|167897313|ref|ZP_02484715.1| LysR family regulatory protein [Burkholderia pseudomallei 7894]
 gi|167921892|ref|ZP_02508983.1| LysR family regulatory protein [Burkholderia pseudomallei BCC215]
          Length = 290

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 4   LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G   + T        L   L +     P + ++++
Sbjct: 64  AAVRQSLDALRAATADIRSRRA--NGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 121

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   ++AD AI              +L   H+    +P +     +     +L 
Sbjct: 122 TS-QDIDPQREHADVAILFGAG-DWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLL 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 180 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 239

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 240 LVDTPIAAGQLVRLVDAPVVTPRGYYLVRPPARPEARAVPLFRRWLL 286


>gi|170695998|ref|ZP_02887136.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170139078|gb|EDT07268.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 302

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 132/298 (44%), Gaps = 9/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA +L +S++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDVNSLTLLVEILDAGNLSEAARRLKMSRANVSYHLNQLERSVGLQLVRRTTRRVEATEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + + L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLQLYEHGRAIQNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMSEWLIGFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+  +      P  
Sbjct: 121 VLDVLFENRVEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASRAFADTHGMPTQ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    LIT   +  +              + EP    +   ++L + Q  + G G+ 
Sbjct: 180 LDDLRTTPLITAAVVGRQLRVAAYLRDERHEVLLEP---TIISENFLFLRQAVLAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++PDY+V D+    ++V  +++     F   +Y  Y     +T     F  FI  +AR
Sbjct: 237 IVPDYVVHDDLQRGDVVTTLDEWRLSIFGTNMYLLYMPNRHHTRAAATFIEFILEQAR 294


>gi|330819473|ref|YP_004348335.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327371468|gb|AEA62823.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 307

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 126/296 (42%), Gaps = 6/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R F  VA +GSF+ AAEQL+ S  +I+R I  LE  + I+LF R  R ++LT+
Sbjct: 1   MDVLNAMRAFERVAEAGSFSRAAEQLNSSVPTITRLIGQLEERLNIRLFQRTTRRISLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+            ++ T+ ++  ++    G+L++ +   +  + +   + +F+  YP 
Sbjct: 61  AGATYLEGCKRALELIDDTENQVTSANDALRGRLKVMSGSAVAFSHMAPVVADFVHRYPL 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+     +   ++  +  + A+     I + +++ R+L+T      AAP YL N     
Sbjct: 121 IQLDFFTMDDGFNLVDEAVEVALLADYLIPTETVVARQLITYSYVIAAAPRYLSNAGRIS 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L K   +                   +       +  +  N+   + +  + G G 
Sbjct: 181 TPSDLQKLVFLGRPGDRRGMSLRLAAAEGAEDDEIIDLVPQVICNNAQMLHELTLSGCGF 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSF--TVYFCYPEALKNTGKLKAFRNFIFL 292
           ++LP  + +       LV+++ +         V   YP   +N+    AF + +  
Sbjct: 241 SVLPQRLAQTAIAGGKLVQLLPEYRLRDLNVDVCLVYPTRKRNSRIATAFIDHVIQ 296


>gi|288962557|ref|YP_003452852.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914823|dbj|BAI76308.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 301

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 140/294 (47%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F+W+ LR F  VAR+G+ T AA++L    S++SR+I+ LE  + + LF R   G TLT 
Sbjct: 3   DFNWNDLRFFLAVARAGTLTTAAQRLRADHSTVSRRITALEDALRVTLFERRPSGFTLTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG +L +    +       Q  + +  +  +G +RI      G + L   +      +P+
Sbjct: 63  QGERLKQTAEVMESAAFLAQGMVADGDLALAGAVRIGAPDGFGSSFLAPRIGALCERHPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++QL+   +   +S   AD AI L +P Q   L  RKL    +  Y    YL+      
Sbjct: 123 LEVQLVAMPRVFSLSKREADIAISLSRP-QEGRLYARKLTDYRLGLYGTRAYLEARPPIH 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H+ I + D +    E  +++ T+           ++ +S ++ ++  + G+G+
Sbjct: 182 GRADLRGHSFIGYIDDLIFAPE-LDYVETIGE-----VAPRIKSSSLVAQLKATLAGAGL 235

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LP +I +  P+L+ ++   +T + + +    E L++  ++    ++I    R
Sbjct: 236 CMLPAFIAQGEPDLLPVLAAEVTITRSFWLIVHEDLRSLARISMTADYIADLVR 289


>gi|187927177|ref|YP_001897664.1| LysR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|309780122|ref|ZP_07674874.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|187724067|gb|ACD25232.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J]
 gi|308921154|gb|EFP66799.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 304

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 129/298 (43%), Gaps = 6/298 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +  +   +GS + AA  L+++ ++ S  +  LE E+G++L  R  R L LT++G 
Sbjct: 4   FDDLTILVLAVDNGSLSAAARVLNIAPAAASAAVKRLEAELGVRLLARSTRSLALTQEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +        L+  Q  L        G + ++   DLG+N+L G L +FL  +P + +
Sbjct: 64  RYLQHARRALADLQAGQDALALGRQAIGGDVSLSIPSDLGRNVLTGWLDDFLTEHPAVAL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           Q+ + ++ +D+     D A+R  +P + SSL+   L         AAP Y      P + 
Sbjct: 124 QVRIGDRLVDMFRQRVDAAVRYGEP-EDSSLVALPLAPDNRRVLCAAPAYFARHGVPKTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIA 242
            +L +HN +          +     A+ D      R++  ++ +    + ++ V G GIA
Sbjct: 183 DDLRRHNCLLLALSDTTHDQWTFHGASDDGQAHVVRVTGNRIADDGELVRRWAVAGHGIA 242

Query: 243 LLPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                 V  +    R+   + D    +  ++      L  +  L   R+F+  +   +
Sbjct: 243 YKSRLDVLADLRAGRLQAALTDWRGEAAPLHLICTHRLALSPTLMRLRDFLQERIAGY 300


>gi|33595673|ref|NP_883316.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33565752|emb|CAE36296.1| probable LysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 305

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 123/297 (41%), Gaps = 8/297 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D  + +R F  +   GSFT AA+ L ++ +++S QI  LE  + I+L +R  R +  
Sbjct: 1   MALDRIEAMRAFCRIVELGSFTRAADSLGVASTTLSEQIQALERLLDIRLLHRSTRKVHP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G   ++   +V   ++  +  +  S     G++ +     +  +L+   L  F   Y
Sbjct: 61  TNEGLAYYQRARKVIEDIDDLEASVSISRAVVKGRVAVEMPTPVSIHLVIPALHGFTERY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + +    + + +  +  DCAIR    I    LI R++  +     AAP YL     
Sbjct: 121 PHIHLDIGCSERVVGLMQEGIDCAIR-GGDIADQDLIARRVGQMRFCLCAAPAYLDAHPA 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLG 238
                +L +H  + F    P   + F       R          +  N+  ++      G
Sbjct: 180 ITHPAQLARHRHLGF--RFPGTGKRFVATLRKQRDSHPLDHPPHVYFNNGTAVTAGAAAG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIA LP   V+   +   L  I+ D    S  +   YP+  + + +++ F  ++  
Sbjct: 238 LGIAALPRAEVRHLLEAGALREILPDWTLTSMPMSVVYPQTHQLSARVQVFVQWVAE 294


>gi|309779658|ref|ZP_07674417.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gi|308921599|gb|EFP67237.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 303

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D ++ LR+F  +    +F  A + L +S + +SR I+ LE  +G +LF+R  +  +LT
Sbjct: 5   HMDHFESLRLFRTIVEVRNFRRAGQMLGVSPAVVSRAITSLEERLGARLFHRSTKQFSLT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +   + +     V   L+  + + +     P G LR+          L   +  F  ++P
Sbjct: 65  DAAHRFYDGCCRVLDDLDCLESDARSQGHLPVGVLRLVAHTSATSAWLAPLVSSFKRMHP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ + + L    +D++ +  D  + L   + +   + R L  + +   AAP+YL++   P
Sbjct: 125 NLMVDVTLAEGVVDLATEGYDIGLVLPFMLATDLAVTRMLQRLPLAIVAAPNYLESHVRP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  +T    + K +  F        P+  P    +  N+     +  + G G
Sbjct: 185 SHPVDLSDHVFVTVPPSVHKPIVTFR---AEGAPLVVPLRYEITSNNAAFNREVVLAGLG 241

Query: 241 IALLPDYIVKDN---PNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRN 288
           + LLP  +V+D+     LVR++ D   +  +  V   Y        +++AF +
Sbjct: 242 MGLLPLALVEDDLREGRLVRLLGDHEILDTAAEVRLAYMSRTMVPARVRAFID 294


>gi|254182819|ref|ZP_04889412.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184213353|gb|EDU10396.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 448

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 144 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 203

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 204 NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 263

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 264 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYARRHAVPRHP 322

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 323 DDLPGSHWIGHGGLANLS---YSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGAGISA 379

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 380 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 426


>gi|322836457|ref|YP_004215834.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321171010|gb|ADW76707.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 305

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 6/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D++ L+VF  V    SF  A++ L +  S++SR IS LE  + ++L  R  R + LT+
Sbjct: 4   ALDFNTLKVFIAVVERDSFVGASKVLEMPTSNVSRCISQLEDRLNLQLIERSTRYMKLTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+  T  +   LE T+ EL    ++  G LRI    ++G  LL   + +F   +PD
Sbjct: 64  AGHLLYTRTKPLLEALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVIADFACQHPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I  + +   ++   D  D AI + R  +  S  I R LVTI     AAP  ++    P
Sbjct: 124 LEISCVTNLSGLESLRDDLDLAIIVSRGQLDDSDYIARHLVTIPCTIVAAPSVIQRYGIP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             IQ+ +    IT  + +      + ++               +VNS     +  V G G
Sbjct: 184 SRIQQFETLPCITTVNALKGA--PWQFVNKKGGFETIKVKGHYRVNSGEMAGRAAVAGVG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            A+L     +   D+  L+ I  +       ++  Y +      K +A   +I
Sbjct: 242 FAILSKQACQPYIDDGRLIEIKFEQPPAPLQLFALYSDRRYLPAKTRALIEYI 294


>gi|294139133|ref|YP_003555111.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293325602|dbj|BAJ00333.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 315

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 135/292 (46%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + + +F+ +  +GS   AA+ L+L +S++SR++  LE E+ +KLF+R +R +TLT  
Sbjct: 2   MKTEDISLFHRIVETGSLVEAADLLNLPKSTVSRRLQALEDELKVKLFHRQSRAMTLTAS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +  T  +   LE T +EL ++  +  G LRI          +   + EF+    ++
Sbjct: 62  GSHFYDKTLSILGDLEQTLMELTDTQAEIGGHLRILMFPVPELLDIANGIFEFMEHNSEL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++LI+  +  D+  +  D A  +      + ++ R++++  +H  A+P YL     P+ 
Sbjct: 122 TVELIVSTEPQDMIRNNIDLAFMVEDSFNENEMVAREVISEELHFVASPGYLAKAGTPVL 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L+KHN I F     +   +  +       +       L +NS    ++  + G GIA
Sbjct: 182 PEDLEKHNSILFRYPNGRIFNEVPF----GNDMKIAVKGNLCLNSIELCLEASITGRGIA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            LP  + +   +   L  + EDV       Y  YP     +   K F + + 
Sbjct: 238 FLPTKVTREYVERGELTILFEDVEPYIGKCYLVYPSRRFISLASKRFIDHMM 289


>gi|262165624|ref|ZP_06033361.1| transcriptional regulator [Vibrio mimicus VM223]
 gi|262025340|gb|EEY44008.1| transcriptional regulator [Vibrio mimicus VM223]
          Length = 311

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 133/294 (45%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S   D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R ++ L LT
Sbjct: 10  LSMKLDDLALFLTVVRCGSFALAAKQKSISTSTLSRRIQQLEQDTGSILLIRSSKELVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L    +E++ ++E  Q +++++     G++ I+  +   ++ L     EF  L+P
Sbjct: 70  KEGEQLFHTYAELFAEIERKQDQVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFSELHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ +++ + +     +    D A+R     + S  +  KL        A+          
Sbjct: 130 NVTLRMQVGSGLDYFTQRDLDIALRFGSQPE-SDWVAHKLARNPSVLCAS-APFAASLSL 187

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              Q+L+ + L++    +P            D+ +     + L  +   +I+Q  + G G
Sbjct: 188 SHPQQLNHYPLLSLNHKLPWIFHS----KESDQKVQFIPSARLSSDELDTIVQATLQGMG 243

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           IA LP  ++    D+  L+ ++ +       VY  +P+      + +A  +++ 
Sbjct: 244 IARLPRGLMAPLLDDGKLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDYMI 297


>gi|193077940|gb|ABO12849.2| putative transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 309

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 125/292 (42%), Gaps = 7/292 (2%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMDVILLHRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  +I + E      G LRIATT DL    +   L  ++  +  
Sbjct: 62  AGQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHIIPALSHWMSAHRG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +   + ++ ID+  +  D A+R+       S     +  +     A+P YL      L
Sbjct: 122 LSVHFEVGHRYIDLIEERIDIAVRMSSTAVEESDSVIPMAFVDQILVASPSYLNQTSPIL 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L+ H L++   +      +F   A     +     S LQ N+       C  G GI
Sbjct: 182 HPNDLNNHELLSINAMNDSRSFNFKH-AKTGEKLNIEMASRLQSNNLQVAKALCQQGHGI 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +     +    N +L+ I+ D   P+FT+Y    +  +   K++     +
Sbjct: 241 ARILYLDAQKELKNGSLIEILPDWKLPAFTLYAEIAKHDQQPMKIQRCVEAL 292


>gi|326325971|ref|YP_004250780.1| putative transcriptional regulator, LysR family [Vibrio
           nigripulchritudo]
 gi|323669022|emb|CBJ93064.1| Putative Transcriptional regulator, LysR family [Vibrio
           nigripulchritudo]
          Length = 296

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +R    V  +GSFT A+E+L +S+S  S+ ++ +E ++G+KLF R  R L++ +
Sbjct: 1   MDTIDGMRTVVAVVETGSFTAASERLGISKSLTSKYVNLVEVQLGVKLFLRTTRKLSVNQ 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +    +V  + +    ++  +++  SG LRI  +    + +L   + EF   YPD
Sbjct: 61  SGYEYYLQAQQVLARFDQLHSQIHSANMSASGSLRITASQGFAEEMLSPMIPEFHTCYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQI +I+ N+ +D+     D A R  + +  SS   RK+V++    YAAP   K C + +
Sbjct: 121 IQIDIIVTNQKLDLVEHGIDIAFRAGQ-LDDSSFNYRKIVSLQSSVYAAPQLAKQCGDGM 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL +   +   +L        +     +        + L+ NS   + Q  +   G 
Sbjct: 180 ---ELTQLPCLIDNNLHANARWPVDHSFNQNNDRNLAVHAVLKSNSPRLLRQLTLSAVGA 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +PD I         L ++        + ++  Y        ++K F +F+  K 
Sbjct: 237 SYIPDIIAARYVKKGLLQKLDVGFTPLKYPLHALYRGGDWQPERVKVFLDFVTSKL 292


>gi|188583885|ref|YP_001927330.1| LysR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347383|gb|ACB82795.1| transcriptional regulator, LysR family [Methylobacterium populi
           BJ001]
          Length = 302

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 115/301 (38%), Gaps = 7/301 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  VA +G F   A    LS S +S  +  LE  +G++L  R  R +  T
Sbjct: 1   MAADLGDLAAFVAVAEAGGFRDGARASGLSASGLSEAVRRLEHRLGVRLLNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +    ++E     +     +P+G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGQRLLERLTPALGEVEAALDVVNGFRDRPAGTLRLNVPVSAARLVLPAIVPPFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI++ +I ++  +D+     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 DIRLDVIAEDSFVDVLAAGCDAGIRYDERLEQD-MIAVPIGPREQRFATAAAPAYLDRHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMED-FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P   + L  H  I         +   F     V R      +      +    +   V 
Sbjct: 180 RPEHPRALLDHACIGGRFASGAALAWEFERDGEVVRVDPSGPLVVRVGTASDLAVDAAVA 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GI  L +  ++   D+  L  ++E         +  Y         L+AF +FI  + 
Sbjct: 240 GVGIITLFEDWLRPHLDSGALEPVLEPWWPRFSGPFLYYSGRRYLPAPLRAFVDFIGRQR 299

Query: 295 R 295
           R
Sbjct: 300 R 300


>gi|160901381|ref|YP_001566963.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366965|gb|ABX38578.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 321

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 132/291 (45%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +L +  +VA  GS + AA  L +S S++S+ +S LE  +G++L  R  R L LT +G 
Sbjct: 20  FAELEMLILVAERGSLSAAARHLGISPSAVSKSMSRLEARLGVQLLQRSTRRLHLTPEGC 79

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L      V   LE  +        +P G +RI T+   G+ LL   + + LL +P + +
Sbjct: 80  QLFERGKRVLADLEELEA-CVAVRSEPRGLVRINTSSSTGKMLLVPLVPQLLLRHPGLSL 138

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +D+     D A+R  + +  S ++ R L        A+P YL     PL   
Sbjct: 139 ELSFTDQIVDLVEAGTDIAVRWGQ-LPPSDMVARLLGHTRQVILASPQYLARMGRPLHPD 197

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  +  G    + +  + +L    R +       ++VN    + +  + G+G+A L
Sbjct: 198 ELGHH--VRLGWSYQRAIPHWPFLVDGQR-VAVDIGEVVRVNDGDVMRELALHGTGLARL 254

Query: 245 PDYIVKDN---PNLVRIMEDVITPSF-TVYFCYP-EALKNTGKLKAFRNFI 290
             Y    +     LV ++E+  T     ++  Y  +  +   + +A  +F+
Sbjct: 255 SLYHAWADVLAGRLVPVLEEFNTGDLEPIHAVYLGKPDRLPPRTRAVLDFL 305


>gi|187920586|ref|YP_001889618.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719024|gb|ACD20247.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 310

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 120/298 (40%), Gaps = 9/298 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             + + L  F  V R+G F  AA    +S SS+S  +  LE  +G++L  R  R +  TE
Sbjct: 11  RMELNDLAAFVSVTRAGGFRDAARIGGVSASSLSIAVRRLEARLGLRLLNRTTRSVAPTE 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L    + ++ ++E     L     KP+G L++       + +L G +  FL  YPD
Sbjct: 71  AGLRLIEKLTPLFSEMEAALDVLNVFRDKPAGTLKLNVPSSAARIVLPGIIAAFLKTYPD 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCRE 179
           I++++++++  +D+     D  IR    ++   +I   +          AAP YL     
Sbjct: 131 IRVEVVVEDGFVDVLSIGCDAGIRYDDRLEQD-MIAIPIGPRVQRFATAAAPGYLDTHGR 189

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVL 237
           P    EL  H  +  G         + +    +     P    L     +    +   V 
Sbjct: 190 PDHPSELLSHACLR-GQFAGGATPIWYFERDGEVLQLNPSGPLLVRPGAAIDLAVSAAVA 248

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G G+  L + +++   D+  L  I+E         +  YP        L+AF +F+  
Sbjct: 249 GVGVIHLFEDLLRPHLDSGALEPILEPWWQRFSGPFLYYPGRRHLPAPLRAFVDFLKA 306


>gi|330897907|gb|EGH29326.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 298

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 122/297 (41%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L  F  V  +  F  AA     S S +S  +  +E  +G++L  R  R +  T
Sbjct: 1   MTTDIQDLLAFVAVVNARGFREAARLSGKSASGLSDAVRRMEARLGVRLLNRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L         ++E+    + +   +PSG LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGARLMERIVPALGEVESALDVVNDFRDRPSGTLRLNVPVSAARLVLPSIITPFLQTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++ +   +D+     D  IR  + ++   +I   +          A+P YL+   
Sbjct: 121 DIRLEVVTEESFVDMLAAGCDAGIRYDERLEQD-MIAVPIGPRFQRFATAASPAYLQARG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCV 236
            P   ++L  H  +  G      +  + +    D    +P   ++     ++   +Q  +
Sbjct: 180 RPEHPRDLLAHACLR-GKFPSGVIPLWEYERDGDIVKVDPAGPLTVRIGGAFDLTVQAAI 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+  L +  ++   D+  L  I+E         Y  YP        L+AF +FI
Sbjct: 239 DGLGVVHLFEDWLRPHLDSGALEPILEPWWQRFTGPYLYYPGRRYLPSPLRAFIDFI 295


>gi|326795005|ref|YP_004312825.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326545769|gb|ADZ90989.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 298

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 136/292 (46%), Gaps = 12/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V + GS + AA     +Q ++ R I  LET VG  LF R   GL  TE+  
Sbjct: 7   WELYRSFLAVLQEGSLSAAARATGSTQPTLGRHIDELETHVGYSLFIRTQSGLVPTERAV 66

Query: 65  KLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            L ++  ++ H  +T +   L       +G +R+ T+  +G  +L   L EF    P I+
Sbjct: 67  SLEKLALDMSHLAQTFERVALSNEDGIINGTVRLTTSDIVGVEVLPAVLSEFQKDNPKIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+L +   D+    AD A+R+ +P Q S LI RK+ T      A+  Y++N   P + 
Sbjct: 127 IELVLSDMPQDLLNREADIAVRMFRPKQ-SQLIARKVGTCKFGFCASKRYIENHALPKTA 185

Query: 184 QELDKHNLITFG---DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           +EL +H LI +    D I +   D      VDR +        + +S +  +     G G
Sbjct: 186 EELRQHPLIGYDKETDFIRRNTRDLG--FDVDRSVFN-----YRADSNIVQLALIRAGLG 238

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I +    ++K + NL+ I+E  I     V+    E L+N    KA  + + L
Sbjct: 239 IGICQLAVIKYDNNLIPILEGAIKLELDVWVTMHEDLRNNPLYKAVFDALVL 290


>gi|120599621|ref|YP_964195.1| DNA-binding transcriptional activator GcvA [Shewanella sp. W3-18-1]
 gi|146292385|ref|YP_001182809.1| DNA-binding transcriptional activator GcvA [Shewanella putrefaciens
           CN-32]
 gi|120559714|gb|ABM25641.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
 gi|145564075|gb|ABP75010.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
 gi|319425685|gb|ADV53759.1| glycine cleavage system transcriptional activator , GcvA
           [Shewanella putrefaciens 200]
          Length = 303

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 111/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L ++ +       L   L +F    PDI +
Sbjct: 68  SYFLDIKDIFIQLADATDRLLARSA--IGSLTVSMSPSFAIQWLVPRLAKFSEKNPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + +     D  D AI          L   KL    +    +P  L   +      
Sbjct: 126 RIKAVDSEASSLTDDVDVAIYYGLG-NWPGLRADKLRNEVLIPVCSPLLLNGPKPLSQPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKYHTLLH----DMSRHDWQAWFRQCGITDINVNQGPI-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV   ++V+      Y    +     GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWML 289


>gi|206579537|ref|YP_002239094.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206568595|gb|ACI10371.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 311

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 117/300 (39%), Gaps = 17/300 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +   VA +G  + A  +L LS ++++ ++  +E     +LF+R  R +TLT  G 
Sbjct: 4   LEDMALLVAVAEAGGLSAAGRRLSLSPATMTARLKAMEERYQTRLFHRSTRAITLTRAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V  +    +  L +     SG +R++   D G+  L   + +F   +P++  
Sbjct: 64  DFYHAARRVLEEARHAESLLTQKEGVLSGNIRLSAPSDFGRQYLSPAIVDFSRRHPEVTF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L  +  D+  +  D +IR+   +  SSL  R +   H    A+  YL     P S+ 
Sbjct: 124 SVFLGERVEDLVANRLDMSIRVGN-LPDSSLAIRHIRPNHRVLVASEAYLATHGTPASLD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  +          E         +         +  +    + Q+ + G+GIA  
Sbjct: 183 ELHHHRCLALERHGVVMNEWR--FEEAGKERVVRVTPAMVCDDGALLRQWALSGAGIAGK 240

Query: 245 PDYIVK---DNPNLVRIMEDVITP-------SFTVYFCYPEALKNTGKLKA----FRNFI 290
             + VK   +   L  +  +  T           + F +P+      ++ A    F +++
Sbjct: 241 SWWDVKRDVEEGRLQVLFAERFTGFSPLDRKEVGLQFVFPQRKLQPPQVSAFMAFFIDWL 300


>gi|254299820|ref|ZP_04967268.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157809733|gb|EDO86903.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 301

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 13  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G   + T        L   L +     P + ++++
Sbjct: 73  AAVRQSLDALRAATADIRSRRA--NGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   ++AD AI              +L   H+    +P +     +     +L 
Sbjct: 131 TS-QDIDPQREHADVAILFGAG-DWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLL 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 189 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 248

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 249 LVDTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 295


>gi|254264503|ref|ZP_04955368.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|254299612|ref|ZP_04967061.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157809507|gb|EDO86677.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|254215505|gb|EET04890.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 448

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 122/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 144 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 203

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 204 NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 263

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 264 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYARRHAVPRHP 322

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++     +R +       L+V S L   Q  + G+GI+ 
Sbjct: 323 DDLPGSHWIGHGGLANLS---YSVFGNEERSVRIQTPGRLKVKSVLLAHQMALAGAGISA 379

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 380 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 426


>gi|330000631|ref|ZP_08303770.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328537930|gb|EGF64113.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 318

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 125/296 (42%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+    S+T AAE+L +S+S+IS++IS LE   G  L +R  R ++L++ G 
Sbjct: 10  WPHLYWLTVLEEQKSYTRAAEKLGISKSAISQKISELERVTGKTLVHRTTRSVSLSDDGL 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    +E + +L        +      G LR+   +   +  L   +  FL  +P + +
Sbjct: 70  RLVAELNEPFGQLRDIFTGACDEGGPLRGTLRLTAPVAFSRQQLVPAIAPFLHQHPQLHL 129

Query: 125 QLILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QL + ++ + ++ +  D AIR   R+ +  +  +   L        A+  Y++    P +
Sbjct: 130 QLEVTDRLVSLASEGFDLAIRHCRREALPDTH-VAWPLCHTATLTVASADYIRRHGRPET 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H  +T+     +    F    + D  +          N+  S+    + G G+A
Sbjct: 189 PEDLRHHQCLTYPRGPQRPQWTFASRQSPDARVTINVQGPFATNNSESLRDAVLAGLGVA 248

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFL 292
           LLPD+  ++      +  ++            +Y   P   + +  ++ F  ++  
Sbjct: 249 LLPDFSAREAIGRGLVQELLPAWQPVEVFADRLYVIRPYTPRVSRAVETFSRYLKA 304


>gi|167031092|ref|YP_001666323.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166857580|gb|ABY95987.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 295

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 134/290 (46%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIESIEQSLGTALFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ ++   P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQAIT-PLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  LI RKL    +  YA+  YL       +
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQDYLHRAPPLRN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ I + D +      F+                 +  S ++       G GIA
Sbjct: 180 REDLARHSWIGYVDDL-----LFSQELLFLNSFCRAPNVVFRSTSVIAQQAAARAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LP+Y+ + +P LVR++    T   + + C    L  + +L+   +++  
Sbjct: 235 VLPNYMARHDPTLVRVLPG-ETIQRSYWICTRRELHKSVRLRVVWDYLLA 283


>gi|325522927|gb|EGD01373.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 331

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 132/297 (44%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R+F  +    SFT AA  L +S+++ +R +  LET +G+ L  R  R L  T
Sbjct: 1   MDNPIRAMRIFARIVEMNSFTRAALSLGISRATATRTVQDLETALGMPLLVRTTRALRTT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   +R    +   ++  +  ++ ++  PSG LR+     +   ++   L  F   +P
Sbjct: 61  PEGDAYYRRCLRITADVDELEASIRRAARHPSGPLRVDLPGPVASAIVLPALGAFHARHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + L +  +  D+  D  DC+++L + +  SS + R L  +     A+P YL  C  P
Sbjct: 121 DLMLMLGVSARAADMVGDAVDCSVQLGE-LPDSSFVARPLGALERVTCASPAYLDRCGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGS 239
            ++ EL  H  +       +   + +++  VD  + + R+  +  V+   + +     G 
Sbjct: 180 RTLDELGTHRAVGRTSGSGQRAAECDFV--VDGAVRKLRLDSIVGVDDEHAYLACGAHGL 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+   P  + +   D   L  ++      + +V   Y +    +  ++AF ++I  +
Sbjct: 238 GLIQPPRAVAQPLIDAGQLREVLPQWRPVAVSVSAVYVKRPHVSPGVRAFVDWIAER 294


>gi|53722921|ref|YP_111906.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76818848|ref|YP_336155.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|134278498|ref|ZP_01765212.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167820944|ref|ZP_02452624.1| transcriptional regulator lysR family protein [Burkholderia
           pseudomallei 91]
 gi|167829297|ref|ZP_02460768.1| transcriptional regulator lysR family protein [Burkholderia
           pseudomallei 9]
 gi|167916050|ref|ZP_02503141.1| transcriptional regulator lysR family protein [Burkholderia
           pseudomallei 112]
 gi|226195570|ref|ZP_03791157.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254185979|ref|ZP_04892497.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254264934|ref|ZP_04955799.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|52213335|emb|CAH39378.1| putative LysR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|76583321|gb|ABA52795.1| transcriptional regulator lysR family [Burkholderia pseudomallei
           1710b]
 gi|134250282|gb|EBA50362.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|157933665|gb|EDO89335.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|225932055|gb|EEH28055.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254215936|gb|EET05321.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 315

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    +              G +RI+ +  +G  +L   +      +P + +
Sbjct: 67  ALRAHAEAMESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHPALTV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+  D+    AD A+R+ +P Q+  LI R +  I +  +A   YL  C  P    
Sbjct: 127 ELALTNRVQDLLRREADIAVRMTRPGQTQ-LIARHIGGIELGLHAHRDYLARCGTPRDAG 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H LI          +        DR         L+ +S L+ +     G+GI   
Sbjct: 186 ELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----ALRTDSDLAQLALIRCGAGIGAC 240

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + K +P LVR++         ++    E L+ + + +A  + +  
Sbjct: 241 QAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAE 288


>gi|150376633|ref|YP_001313229.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150031180|gb|ABR63296.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 309

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 131/302 (43%), Gaps = 17/302 (5%)

Query: 1   MSFD----WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           M        + LRVF   AR GSFT A ++L ++Q+++S QI  +E  +G  LF R  R 
Sbjct: 8   MKMSKQFPLNALRVFEAAARLGSFTKAGDELGMTQTAVSYQIRLIEENIGEPLFLRRPRQ 67

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           + LTE G  L    +E +  L       + ++      L I +T       L   +  F 
Sbjct: 68  IALTEVGQHLAPKVTEAFEMLHDAVASARGNAEAA---LLINSTATFASQWLAREIGTFQ 124

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           L +P+I ++L+ ++  ID + +  D AIR         L   +L+ +      +P   + 
Sbjct: 125 LEHPNIAVRLVANDAIIDFNKEAVDVAIRSGMG-DWPGLASHRLMRVEFTPMLSPALAET 183

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                + ++L K  +I   D  P     F      D  +     S L   ++ +  +  V
Sbjct: 184 VGGVRTPRDLLKLRIIDPRD--PWWSLWFRAAGVDDPDLDGRPGSRLGAQAFEA--RAAV 239

Query: 237 LGSGIALL-PDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G G+A+L P++   D+  L R+    E   +     +  YP A +N  K++AFR++I  
Sbjct: 240 AGQGVAILMPEFY-SDDVALGRLYQPFELRCSDGHDYWLVYPHARRNAPKIRAFRDWILG 298

Query: 293 KA 294
           K 
Sbjct: 299 KL 300


>gi|115376171|ref|ZP_01463414.1| transcription regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366821|gb|EAU65813.1| transcription regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 299

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 133/291 (45%), Gaps = 9/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++  F  V  +GS + AA+QL LS +++SR ++ LE EV   L  R  R +T+T  G + 
Sbjct: 6   RMATFVRVIEAGSLSAAAKQLRLSTAAVSRHVTALEQEVATPLLARTTRRMTVTVAGQQY 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     V  +++  Q   ++   +  G LRI+  + +G       L+  +  +P +++ +
Sbjct: 66  YERCLRVLREVDEAQSIGRD--GRLEGLLRISLPVTVGFLSGASLLRSLVGKHPGLRLDV 123

Query: 127 ILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            L+++ ID+ ++  D AIR+  KP  S+ ++ R L   H    A+P Y++   +P +   
Sbjct: 124 RLEDRLIDLVLEDVDVAIRVAAKPPLSTEIVARPLSRWHRVVVASPAYVRRHGKPKTSAA 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  I    +     E +  L          ++ C   N+   + +  + G G+ALLP
Sbjct: 184 LAAHESI--SPVRDAATEVWTLLNGAATARVRMKVRC-SCNAGHLLRELALDGLGVALLP 240

Query: 246 DYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            + V  +     L +++    +    VY  Y  + ++  +++     +   
Sbjct: 241 HWFVAADLQNKRLRQLLPGWQSEPVEVYALYRASRRHEPRVRVLVEHLRAA 291


>gi|152970289|ref|YP_001335398.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955138|gb|ABR77168.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 301

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 124/287 (43%), Gaps = 8/287 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +R+F  V   GS + AA  L + Q ++S +I  LE  +G +L  R+ R ++LT
Sbjct: 1   MDL-FSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+  +  +       E      +E+     GK+RIA     G++LL   L +    +P
Sbjct: 60  QSGNVFYERSKTAVQAAEHALSVNEENQG-LQGKIRIAAPYSAGESLLMPALLQLQNEHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q+ +I +++ I+   +  D ++RL   +     + R L T+     A+P  L     P
Sbjct: 119 ELQVDVIFNDRVINPVTEGVDLSLRLGD-VSEGFFVARPLGTVRRVLLASPALLAKMGHP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +   L  +       +          +A+ D+ I  P     Q   + S++ + + G  
Sbjct: 178 DTPDALTDYPFAAVSGVF--ASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHA 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           I +L   + +    +  L+ ++     P F+ +  +P A   + + +
Sbjct: 236 IGVLQSPVCRKEIADGALIPLLSHYPIPPFSAWLLHPPAGMMSYETR 282


>gi|152970999|ref|YP_001336108.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955848|gb|ABR77878.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 318

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 125/296 (42%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  L    V+    S+T AAE+L +S+S+IS++IS LE   G  L +R  R ++L++ G 
Sbjct: 10  WPHLYWLTVLEEQKSYTRAAEKLGISKSAISQKISELERVTGKTLVHRTTRSVSLSDDGL 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    +E + +L        +      G LR+   +   +  L   +  FL  +P + +
Sbjct: 70  RLVAELNEPFGQLRDIFTGACDEGGPLRGTLRLTAPVAFSRQQLVPAIAPFLHQHPQLHL 129

Query: 125 QLILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           QL + ++ + ++ +  D AIR   R+ +  +  +   L        A+  Y++    P +
Sbjct: 130 QLEVTDRLVSLASEGFDLAIRHCRREALPDTH-VAWPLCHTATLTVASADYIRRHGRPET 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H  +T+     +    F    + D  +          N+  S+    + G G+A
Sbjct: 189 PEDLRHHQCLTYPRGPQRPQWTFASRQSPDARVTINVQGPFATNNSESLRDAVLAGLGVA 248

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFL 292
           LLPD+  ++      +  ++            +Y   P   + +  ++ F  ++  
Sbjct: 249 LLPDFSAREAIGRGLVQELLPAWQPVEVFADRLYVIRPYTPRVSRAVETFSRYLKA 304


>gi|24375640|ref|NP_719683.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24350551|gb|AAN57127.1|AE015848_5 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 303

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 130/297 (43%), Gaps = 8/297 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L++   +A   S + A++++ ++ ++ S  +  LE ++G +LF R  R L LTE+G 
Sbjct: 4   INDLQLALRIAALESLSAASKEVGMTPAAASAALQRLEKKLGCQLFARSTRRLQLTEEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LET    L E   +  G++R+A   D+G++ ++  L E +   P++ I
Sbjct: 64  IFLDAAKPALALLETASANLAEHRGELKGEVRLALPSDIGRSRIRYWLDELMDSAPELSI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL   +   D+       A+R  + ++ S+L +R+L        A+P YL    EPL++ 
Sbjct: 124 QLYFGDHMTDLIDQNIHLALRYGQ-LEDSNLKRRQLSMTPRVLVASPAYLAQYGEPLTLN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIAL 243
           EL +H+++              W  + +    E  +   +  N    I  + + G GIA 
Sbjct: 183 ELSQHSVLILN---RGGEPWQKWKFSHNGEAVEIEVRGKRFCNDGAVIRDWALDGRGIAY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                V  +     L  ++ D I P   +   Y +    + K++    F+  K + +
Sbjct: 240 KSWLDVAQDVTEGRLKLVLADKIAPPIPLQLVYLQTDYPSHKIRRTIEFLAQKLQQF 296


>gi|330976433|gb|EGH76488.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 316

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 112/295 (37%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LT+
Sbjct: 7   DVSLDLLRAFEVAARLRSFTAAALELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  + PD
Sbjct: 67  AGEVLFSHVQAGLQSIDSGLIAITEHHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  L   + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-QSHWLFSEEVFPVCSPQLLAGRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNDALRDFPLLHLRGESINNWFDWAGVFRALDIPQAPAPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWRHLVDDLLDQGLLCRPIAGAAISGQGYYVVLPQRKRRVQIVQQFVDWLASE 298


>gi|307293155|ref|ZP_07573001.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
 gi|306881221|gb|EFN12437.1| transcriptional regulator, LysR family [Sphingobium
           chlorophenolicum L-1]
          Length = 292

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDWD LRVF  VAR+     AA  L +  ++I+R+++ LE  +G +LF   A   TLT  
Sbjct: 2   FDWDDLRVFLAVARTRKIAPAARALGIDATTIARRLARLERTLGPELFEMGAGERTLTAH 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +         E        SG++R++     G  +L   L +F   +P I
Sbjct: 62  GQVLLHHAESIESAALAAMEEATGREHHLSGQVRLSVAEGFGTWVLAPGLADFSRRHPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ LI  +  ++ S   AD A+ L +P Q   L  R++    +H YA+P YL     P S
Sbjct: 122 RLDLITASGFLNPSKREADMAVMLARP-QRGRLSVRRMGDYRLHLYASPAYLAQAGAPGS 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L  H L+ +        E  ++L  V+  +     + L+  S     +    G+GI 
Sbjct: 181 TAALRGHVLVGYVPEFIFSPE-LDYLDEVEAGLE----ASLRATSINMQHRMIAEGAGIG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +LPD+I   +  LV +M D +    + +      LK   ++ A   ++  +
Sbjct: 236 VLPDFIAGRDSALVPVMADRVEIMRSFWLVTHGDLKKLPRIAAVAQWLQER 286


>gi|254505713|ref|ZP_05117859.1| transcriptional regulator [Vibrio parahaemolyticus 16]
 gi|219551366|gb|EED28345.1| transcriptional regulator [Vibrio parahaemolyticus 16]
          Length = 302

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 133/296 (44%), Gaps = 10/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  SGSF+  A++L +S SS+SR ++ LE  +  KL  R  R + L+  G 
Sbjct: 10  LSEMAIFVNVVESGSFSKTAKKLGVSPSSVSRSVTRLENALEEKLLERTTRQMRLSSTGQ 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++ + S++ +  +      Q      SG LR+A    L + +L   + +F+  YP++ +
Sbjct: 70  EVYSLCSDMMNSAKMAVSAAQVDKTDVSGSLRVAAPKALSRQVLMPMILDFIDDYPNVSL 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + +  ID   D  D  I +     +  LI + L    +   A+P Y++    P+  +
Sbjct: 130 QLKVADHYIDPIGDEVDIIIMITNK-PTEGLIAKPLGQCRLVLCASPAYIEEYGMPIHPE 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++  HN +  G+     + +F      ++ +         VN      +  + G GI++ 
Sbjct: 189 DISSHNCLCLGENPRDRVWEFT---NNNKRVSINVNGSFVVNHSEIRREAVLRGVGISVF 245

Query: 245 PDYIVK---DNPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P++ ++   D+  +V ++ D          +   Y ++     ++K F  ++  + 
Sbjct: 246 PEFAIQSYIDSGQVVEVLRDWHVGGNYQGKIIAQYAQSKYIPSQIKTFIEYLQQRL 301


>gi|171321343|ref|ZP_02910301.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171093380|gb|EDT38569.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 301

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 127/297 (42%), Gaps = 5/297 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D +  F  V  SGSF  AAE+L +++S+  + I+ LE  +G +L  R  R  +LT
Sbjct: 1   MTDRLDGVTTFVQVVESGSFALAAERLDMTRSAAGKAIARLEKRLGARLLQRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G   +        +LE  + +L     +  GKLR++  +  G + +   + +    YP
Sbjct: 61  DDGQAYYDRCVRALSELEAAEADLDCGRNEARGKLRLSVPLAFGHHCVTPIVLDLARTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + + ++ +D   +  D A+R+     S+SL  R+L T +    AAP YL     P
Sbjct: 121 HLRIDVSITDRFVDPVEEGIDLAVRIGTLADSTSLAVRRLGTQYGSLGAAPSYLARHGMP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ +L  H  I +        + ++  A     +       L  +   +I      G G
Sbjct: 181 QSLDDLRNHRTIAYSR--SGVAQPWDLRAPDGSTVRVDMQHQLSFDDVQAIAAAGAAGFG 238

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IA LP +++        +V +++        ++  +P+      K +   + +    
Sbjct: 239 IAWLPSWLLDHYVKRGEMVVVLDRCFVCEGDIHAIWPKTRYLPRKTRCVIDALVQAV 295


>gi|170690695|ref|ZP_02881861.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143944|gb|EDT12106.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 292

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 124/293 (42%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G 
Sbjct: 7   LNALRAFESSARHLSFTRAALELNVTQAAVSQQVRSLEERLGTTLFKRLPRGLAMTDEGL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L  V ++ + ++E    + +         L +          L   LK F   +P +++
Sbjct: 67  ALRPVLTDAFDRIEAVLKQFEGGHFHE--VLTVGVVGTFAVGWLMPRLKSFREAHPFVEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+ +N  +D++ +  D AIR        SL   +L+   +     P        P    
Sbjct: 125 RLLTNNNLVDLATEGLDFAIRFGDGTWPGSL-ATRLLDAPLALLCTPEIAARLSTP---A 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  +  NW A    P    R      +S   +++  + G+GIAL 
Sbjct: 181 DLADQTLL----RSYRADDWSNWFAAAGIPPRPIRGPVF--DSSRLMVEAAMQGAGIALA 234

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +         LVR   DV   + + +  + +    T  +  F  ++  +A
Sbjct: 235 PALMFDREINTGRLVRPF-DVEVHAGSYWLTWLKGKPMTPAMLLFSQWLIKEA 286


>gi|330721921|gb|EGG99870.1| Glycine cleavage system transcriptional activator [gamma
           proteobacterium IMCC2047]
          Length = 297

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 122/295 (41%), Gaps = 13/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R F   AR  SFTHAA +L+L+Q+++S QI GLE ++G  LF R ARGL LT  G 
Sbjct: 8   LNWVRAFEAAARHLSFTHAATELNLTQAAVSNQIKGLENQLGCVLFIRLARGLELTSAGH 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E   +L     E+          L I   +    N L   +  F+  +PDI +
Sbjct: 68  AYLPAVQESIDRLRAATQEIFGQGRSKL--LTINVNLSFFINWLAPKMSRFVAQHPDINL 125

Query: 125 QLILD--NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++  +  +  ID S D  D  IR     +       +L    +    +P+YLK      +
Sbjct: 126 RMTTNIWDSYIDDSADN-DLEIRYGHG-EWKGKQADRLTWDKLVPVCSPNYLKTSAPLKT 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             ++  H L+             +        + +      Q ++  + ++    G G+A
Sbjct: 184 PDDIVNHTLLHVIGFEEGWGYWLSQTEHKPIKLDQ----RFQFDTLATTLEMAAHGVGLA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L    ++ +   +  LV  +E+ +      Y  YP +  N  +   FRN++  +A
Sbjct: 240 LGRTDMITEMIKSGRLVIALEEKVVTEEAFYLVYPSSKLNYSQATDFRNWLLEEA 294


>gi|221210743|ref|ZP_03583723.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221169699|gb|EEE02166.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 293

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 121/293 (41%), Gaps = 15/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+
Sbjct: 7   LNALRAFEVAARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGA 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     H +      L +        L I+TT       L   L +F   +PDI +
Sbjct: 67  AYFSDVQRALHAIADATDRLVKRRA----TLTISTTPSFASKWLIPRLAQFTDAHPDIDV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D +      D  D AIR  KP     L    L  + + A  +P  L     P S +
Sbjct: 123 RVIADQQLATFRHDGVDLAIRYGKPPFGKHLAAHALFPLDVCAVCSPALLAA---PASPR 179

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H L+     +        ++A +  P+       L+ N     +   + G GIAL 
Sbjct: 180 ALAGHVLLHDAHDLWPA-----FIAALPEPVDVDPHKGLRFNQTSLAIDAAIAGQGIALA 234

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D +V+ +     L +  +     S   Y  YP   ++   +   R+++   A
Sbjct: 235 TDPLVERDIAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDTIAVMRDWMIGAA 287


>gi|119387300|ref|YP_918334.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377875|gb|ABL72638.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 322

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 116/287 (40%), Gaps = 7/287 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L     +AR G+F  AA +L +S +++S  I+ LE  +G++LF R  R ++L++ G 
Sbjct: 28  LRDLEAVLAIARRGTFRAAAIELGMSTTALSHAIARLEAGLGVRLFNRTTRSVSLSDAGR 87

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     S    ++      ++     PSG LRI  +   G+ ++   + +FL  +P +Q+
Sbjct: 88  QFVASVSPALAEIRGAMDSVRAQGQTPSGMLRINASAVAGREIISPLVLDFLRRHPRMQV 147

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
            L+ + + +DI  +  D  IR    +    +I   L         A P +L +   PL  
Sbjct: 148 DLVTEERLVDIVAEGFDLGIRTGDLVPRD-MIALPLGKPQRYAVVATPAWLADRPLPLVP 206

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ I       +    +         +       L ++         + G+GI  
Sbjct: 207 ADLLAHDCIRVRLPNRELFRWY--FERQGEVVQIDVRGRLILDEAAIARAAVLEGAGIGF 264

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
                V ++     L+R++ED   P       YP     +  L AF 
Sbjct: 265 FIKQNVAEDIAAGRLIRLLEDWTPPRPGFCLYYPGRRNPSAGLTAFL 311


>gi|254480757|ref|ZP_05094004.1| LysR substrate binding domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039340|gb|EEB80000.1| LysR substrate binding domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 296

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 118/292 (40%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR +   AR  SF+ A+ +L+++ +++S Q+  LE  +G+ LF R  R L LT  G 
Sbjct: 8   LNSLRAYECAARHMSFSLASAELNVTPAAVSHQVKLLENHLGVSLFIRLTRKLRLTTAGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    SE + KL      +  +S      LR+     L    L   L  F   +P I +
Sbjct: 68  RLLPEVSEAFLKLREAVNTVDPNSANDVLTLRLG--PSLAARWLSPRLHLFWQQFPTIDL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N  ++   +  D AI          +I   L+ I  +   +P  +       +  
Sbjct: 126 RLYHSNSPVNFDREDIDLAITYGAG-SWPGVIASPLLDIDFYPVCSPKLVGTESASSTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H L+          +   WL   D P   PR   + ++    ++Q  + G GIAL 
Sbjct: 185 LLLNHTLLH----DAHYDDWEAWLKQSDMPQINPRRGII-IDDTNVLIQAALDGQGIALC 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               V+++     LVR+ +  +      Y   P+       +K  +N++  +
Sbjct: 240 STLFVQEHLDAGRLVRLFDTKLKNDMAYYIVCPKGHLQRPAVKEVKNWLLSQ 291


>gi|77362280|ref|YP_341854.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76877191|emb|CAI89408.1| putative transcriptional regulator with periplasmic binding domain
           (LysR family, YafC, YeaT) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 312

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 139/290 (47%), Gaps = 7/290 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L +   V   GSF  AAE  ++ +S IS+QIS LE E+G++L  R  R  +LT  G+++
Sbjct: 6   RLLMLLEVVEQGSFAKAAEIRNIDRSVISKQISRLEDELGVRLLNRTTRSFSLTAAGAEM 65

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  +++   L  T    +    +P G L+I  +  +G+  LQ  + +F   +P ++++L
Sbjct: 66  IKKAADLRELLGETLRMAENYHQEPRGLLKITASTIIGRRYLQPVINDFQKRFPQVEVEL 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            LD++ +DI  +  D A R+ +P + SSLI RK+    +   A P ++K    P ++ +L
Sbjct: 126 RLDDRLVDIVSEGFDLAFRIGEP-KDSSLIARKIARNRLLILATPEFVKTYGMPKTMSDL 184

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +    ++     + ++  N+         +   S  + N    ++   + G+   L P 
Sbjct: 185 AQLPAASYKSNAFR-VDAINYYNDKGEACEQKIRSVFRANDAEVLLMKTLSGTSYFLAPA 243

Query: 247 YIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +++ +   +  LV ++ ++ I     +Y  YP       + + F + +  
Sbjct: 244 FLLDNEVIDGELVPLLTNIKIMDHSAMYALYPH-RDLPVRTRLFFDAVRE 292


>gi|294789438|ref|ZP_06754675.1| LysR protein [Simonsiella muelleri ATCC 29453]
 gi|294482651|gb|EFG30341.1| LysR protein [Simonsiella muelleri ATCC 29453]
          Length = 298

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 12/296 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+ +L VF  +A   S T AA++L+L+  S+S+ +  LE ++G+ LF R  R + LT+ G
Sbjct: 5   DFGQLLVFQAIAEEKSITAAAKKLNLAVPSVSKSLKLLEHKMGVPLFTRTTRTIQLTDSG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L + TS     L     E+ E    P G ++I  +      + +  L +F   YP I 
Sbjct: 65  LQLWQNTSAHLIALNQAFEEVSEQHQTPRGTVKITLSQVHFDLIFKDILLDFYAQYPHIT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLS 182
           +   ++N  ++++    D  IR    +    ++ RK+   I    Y +  Y++    P S
Sbjct: 125 LDFSINNATVNLAEQGFDLGIRFGNTLAD-GVVARKIYPSIRQGIYVSNSYVEKYGIPQS 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGI 241
             +L  H +I F  +  K +E F  L  +D  + E  + + L +N    I+     G GI
Sbjct: 184 PNDLAAHRMIGFYFMTAKKIEPF--LLNIDGVVQEVFVHNVLILNDTDKIISAIHAGVGI 241

Query: 242 ALL----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +    PD  V  N  L+ ++E+        +  +        +++   +F+  K
Sbjct: 242 GRIFDNAPD--VALNG-LIPVLEENWLCFPETFLYFMPNRYKAKRVQVVIDFLLQK 294


>gi|167818854|ref|ZP_02450534.1| LysR family regulatory protein [Burkholderia pseudomallei 91]
 gi|167827228|ref|ZP_02458699.1| LysR family regulatory protein [Burkholderia pseudomallei 9]
 gi|167913978|ref|ZP_02501069.1| LysR family regulatory protein [Burkholderia pseudomallei 112]
          Length = 290

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 4   LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G   + T        L   L +     P + ++++
Sbjct: 64  AAVRQSLDALRAATADIRSRRA--NGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 121

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   ++AD AI              +L   H+    +P +     +     +L 
Sbjct: 122 TS-QDIDPQREHADVAILFGAG-DWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLL 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 180 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 239

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 240 LVDTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 286


>gi|26990639|ref|NP_746064.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985625|gb|AAN69528.1|AE016586_7 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 313

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 127/293 (43%), Gaps = 14/293 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D   +++ F  VA   SF  AA  L  S S+++R +  LE   G KL  R+A  +TL
Sbjct: 13  MALDMLREIQAFVSVAHKRSFVAAARALGRSPSAVTRAVQTLEDNAGSKLLNRNANAVTL 72

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L      +         EL   S    G +R A    LG+++L   L EF   +
Sbjct: 73  TEAGERLLPHAERLLDVQRDAADELAALSGNAQGWIRFAAPQLLGEHVLPQVLAEFSRRH 132

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +   ++ +D      D  +R   P QSS LI   L     H YA+P YL     
Sbjct: 133 PQVTLDVQYSDEALDPLQGKFDFVVRGAFP-QSSELIGYPLWPYRRHLYASPAYLALAGT 191

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++LD H LI      P+ ++ +++          PR   L++ S  ++    + G+
Sbjct: 192 PQHPEDLDGHTLILH--TAPRILKAWHFCHNDQITSLRPR-PRLRLGSGGAVYHSTLAGA 248

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLK 284
           GIA L  ++ +       LVR+       S +     ++  YP   +   +++
Sbjct: 249 GIARLAAWVGEAQVKAGRLVRVCPQYRLTSSSGQDPQMHAVYPAG-ELPTRVR 300


>gi|330937239|gb|EGH41255.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 316

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 112/295 (37%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LT+
Sbjct: 7   DVSLDLLRAFEVAARLRSFTAAALELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  + PD
Sbjct: 67  AGEVLFSHVQAGLQSIDSGLIAITEHHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  L   + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESHWLFSEEVFPVCSPQLLAGRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNDALRDFPLLHLRGESINNWFDWAGVFRALDIPQAPAPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWKHLVDDLLDQGLLCRPIAGAAISGQGYYVVLPQRKRRVQIVQQFVDWLASE 298


>gi|331008324|gb|EGH88380.1| LysR family transcriptional regulator protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 310

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 120/289 (41%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  V R  SFTHAA +L ++ S++S  I  LE  +G++L  R +R ++ T+ G
Sbjct: 13  DLADLNSFLAVERMRSFTHAAVELGITTSALSHSIRNLENRLGVRLLNRTSRTVSATDAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L +  +  ++++      L     +PSG+LR+    D  + L    L  FL  YP++ 
Sbjct: 73  AALAKRLAVGFNEISGALAALDRHRDRPSGRLRLNVLSDGARLLFTKYLPPFLEAYPEVS 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D++ +DI     D  +R    I    +  R    +   A A+P YL      +  
Sbjct: 133 VEVAVDDRMVDIVSAGFDAGVRFGNTIPEDYIAVRLSEDLRWVAVASPRYLNANPRIVIP 192

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
           ++L  HN I    +       + W    D       +   L VN     ++  +   GI 
Sbjct: 193 EDLKNHNCI---QIRTGNGVIYRWDFEKDGDHQIIDVPGQLCVNETTFGIEMAMADRGIT 249

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
              +  V+ +     L  ++ D        Y  YP   +    L+   +
Sbjct: 250 YCLEERVRAHLARGELQIVLPDWCPMEPAFYLYYPGRRQMPPGLRELID 298


>gi|126641456|ref|YP_001084440.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 259

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 109/247 (44%), Gaps = 5/247 (2%)

Query: 49  LFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLL 108
           +  R  R +  +  G   +   +++  +L+  +  L+    +P G LR+  +      ++
Sbjct: 1   MLERTTRHVRPSLDGQAFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIV 60

Query: 109 QGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168
             N+ +F  LYPDI++ +   ++ +D+  +  DC +R  + +  S+LI R LV +     
Sbjct: 61  LPNIDQFHELYPDIELVISTGDRLVDLIREGIDCVVRAGR-LDDSTLIARHLVDMPQVIC 119

Query: 169 AAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSY 228
           A+P YL     P   ++L  H  + F          F  L    +       S + VN  
Sbjct: 120 ASPDYLNKHGTPEQPEDLLSHYCVNFFSTSGGRNYPFE-LMVNGKKQDYFLKSWIAVNDA 178

Query: 229 LSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            + +   + G+G+  +P Y V +   N  LV ++ +  +P  +V   YP+  + + +++ 
Sbjct: 179 ENYVLSALQGAGLIQVPHYHVANELKNGRLVEVLSEWESPKMSVSALYPQHRQLSPRVRV 238

Query: 286 FRNFIFL 292
           F  ++  
Sbjct: 239 FVAWLSE 245


>gi|153825258|ref|ZP_01977925.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
 gi|149741086|gb|EDM55145.1| transcriptional regulator, LysR family [Vibrio cholerae MZO-2]
          Length = 316

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 134/296 (45%), Gaps = 12/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  V R GSF  AA+Q  +S S++SR++  LE + G  L  R+++ L LT++
Sbjct: 12  MKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRVQQLEQDTGSILLIRNSKELVLTKE 71

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E++ ++E  Q E++++     G++ I+  +   ++ L     EF  L+P++
Sbjct: 72  GEQLFHSYAELFAQIERKQEEVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHPNV 131

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC----R 178
            +++ + +     S    D A+R   P   S  + RKL        A+            
Sbjct: 132 TLRMQVGSGLDYFSQRDLDIALRFG-PQPESDWVARKLARNPSVLCASTELAAKLSRVTP 190

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                ++L +H L++    +P          +V + +     + L  +   +I+Q  + G
Sbjct: 191 ALAHPEQLKEHPLLSLNHKLPWIFHHH----SVAQKVQFIPTARLCSDELDTIVQATLQG 246

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            GIA LP  +++    +  L+ ++ +       VY  +P+      + +A  ++I 
Sbjct: 247 MGIARLPRGLMEPLLRSGQLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDYIM 302


>gi|56698313|ref|YP_168686.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56680050|gb|AAV96716.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 294

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 130/291 (44%), Gaps = 6/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DW+ +R F   A +GS + AA +L L+Q ++SRQ++ LE ++G+ LF R  R L LT+
Sbjct: 6   KLDWNHIRAFLKTAETGSLSAAARRLDLTQPTLSRQVAALEQDLGVMLFERIGRTLVLTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L   T  +    +   +     +    G++RI  +  +   +L   L+      P 
Sbjct: 66  AGADLLEHTRAMGAAADRVALAASGQAQSIEGRVRITASDVMSAYVLPEALRRIRAQAPR 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++I  N   D+    AD AIR  +P +   LI R +     H YAA  YL     P+
Sbjct: 126 LEIEVIAANDIRDLMRREADIAIRHVRP-EQPDLIARLVREATAHFYAASGYLDRRGRPV 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H+ I FGD+     E    L  +  P+       L   S +    Y   G GI
Sbjct: 185 TKDDLATHDFIAFGDVT----EMLGHLTPLGLPLTRANF-RLGSQSGVVAWDYVRQGFGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A + D +    P + R++  +    F V+      L  + +++   + +  
Sbjct: 240 APMDDGVAAATPGVERVLPQMEPLLFPVWLTAHRELHTSRRIRLVFDILAE 290


>gi|222147923|ref|YP_002548880.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221734911|gb|ACM35874.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 304

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 121/295 (41%), Gaps = 9/295 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  V R+GSF+  A +  +  SSI+R+I  LE   G  LF R  R L LT+ G  
Sbjct: 8   HHLSTFVDVVRAGSFSAVARRQGMKPSSIARKIDMLEDYFGAALFVRSTRALMLTDVGEV 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      + ++L   ++E++       G LRI+     G+  +   L +    +P + ++
Sbjct: 68  LVARAEVILNELNAMRVEIKSIKDNLDGPLRISCLPTFGKLHILPWLPKLRENFPRMTVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  + S++  D  +R+  P+  S L  + +        A+P Y+    +P    +
Sbjct: 128 LDLTERIANPSIERLDAVLRIG-PLNDSGLYAKTIGVQRWLVCASPAYVGRSGKPAGWSQ 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H ++              W   +D           + N +  + Q  + G G+A LP
Sbjct: 187 LAGHAIV----DKLHDPAGICWHGALDPQQYSAMSIGFRCNDFDGLRQAALGGLGLAYLP 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           D++   +     LV++ +D       +      +   + +L+ F + +    R +
Sbjct: 243 DWVALPDITAGRLVKLFDDSKRGDEPISLLRASSK-PSARLQIFHDALLDHLRKF 296


>gi|311107166|ref|YP_003980019.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761855|gb|ADP17304.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           132 [Achromobacter xylosoxidans A8]
          Length = 301

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 119/291 (40%), Gaps = 5/291 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LR F  +A + S   AA  L ++  ++++++  LE  +G++L  R  RG  LT++
Sbjct: 2   ITTEDLRFFLSLAATRSLAEAARALDVTPPAVTQRLHTLEKRLGVRLVNRSGRGTALTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++  +L     EL       +G LR+   +  GQ  + G + EF     D+
Sbjct: 62  GRLLALRAEQICGELGDLADELAGRRDVVAGHLRVVAPLGFGQRYIAGLVAEFRGQNADV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
              L L +    ++ D  D  + + + ++ S+L+   L        A+P YL     P  
Sbjct: 122 TASLTLSDGPPRLASDDWDVMVHIGE-LRDSTLVAYPLAPNRRILCASPAYLARRGAPAK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H+ I   +   + +  + +       +G      L  N+  + +++ + G GI 
Sbjct: 181 PEDLRAHDCIALRE-NDEDVTLWRFKHGRGPAVGVRIAPALSSNAGETAVEWALAGHGIM 239

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  ++ V  +     LV ++     PS  V        +   +   F   +
Sbjct: 240 VRSEWDVAAHLQARALVPLLPGWSLPSADVVALVKSRQELPARTAGFLAHL 290


>gi|294666308|ref|ZP_06731557.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603910|gb|EFF47312.1| transcriptional regulator, LysR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 300

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 122/296 (41%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     +  F  VAR+G F  AA+   +S S+ S  I  +E  +G++LF R  R + LT
Sbjct: 1   MSGHLADMEAFVRVARAGGFREAAKSAGVSASTYSDAIKRMEASLGVRLFNRTTRSVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+ L    +    +LE  +  +      P+G LR+   +   + +L   L  F+  YP
Sbjct: 61  DAGNALLARIAPALLELENAREVVSAFRDTPTGTLRLNVPVSAARLVLPRILPAFMAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA-APHYLKNCRE 179
           DI ++++ +   +D+     D  IR  + +Q   +       +   A A AP  L     
Sbjct: 121 DITLEILTEESFVDVIAARCDAGIRYGERLQQDMVAIPIGPRVQRIAXAXAPGXLXRXGR 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVL 237
           P+  ++L  H+ I  G      + ++ +    +     P+   L          +Q  + 
Sbjct: 181 PILPRQLVAHDCIR-GRFPSGVIAEWEFERDGEVVTIVPQGQLLVEIGGGIELAIQAAIA 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GSGI  L +  ++   D   L  I+     P    Y  YP        L+AF  F+
Sbjct: 240 GSGILHLFEQWLQPQFDAGALEPILRPWWQPFQGPYLYYPNRTLTPPALRAFIEFV 295


>gi|207744828|ref|YP_002261220.1| hypothetical protein RSIPO_03042 [Ralstonia solanacearum IPO1609]
 gi|206596238|emb|CAQ63165.1| hypothetical protein RSIPO_03042 [Ralstonia solanacearum IPO1609]
          Length = 289

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 116/284 (40%), Gaps = 6/284 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  V R GS + AA  L L+Q +  R +  LE  +G  LF R  +GL+ TE    L  
Sbjct: 3   RTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAALALRP 62

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
               +                   G +RI  +  +   +L   L +    YP + ++L+ 
Sbjct: 63  YAESLESTSAALLRAASSQGEGVRGTVRITASEVVTGEVLPAILADLHAAYPGLTLELVP 122

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
            N+  D+    AD A+R+++P Q   LI R +  I +  +A   YL+    P ++ +L  
Sbjct: 123 SNRLEDLLRRDADIAVRMQRPSQ-GVLIARHIGGIELGVHAHRRYLERRGTPATLDDLAG 181

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H LI +          F        P        L+ +S L+ +     G GI +    +
Sbjct: 182 HALIGYDRETA-----FIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGICQVGL 236

Query: 249 VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            + +P+LVR+  D + P    +    E L+++   +   + +  
Sbjct: 237 ARRDPDLVRLFADEVAPVLDTWLAMHEDLRDSPCCRVVFDALAA 280


>gi|197106876|ref|YP_002132253.1| transcriptional regulator, LysR family [Phenylobacterium zucineum
           HLK1]
 gi|196480296|gb|ACG79824.1| transcriptional regulator, LysR family [Phenylobacterium zucineum
           HLK1]
          Length = 320

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 124/287 (43%), Gaps = 6/287 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +DW+ L+ F  VAR GS   AA  L ++Q++++R+I  LE  + +KLF R   G  LTE 
Sbjct: 2   YDWNDLKAFLAVARGGSTLAAARGLGVNQTTVARRIESLEAALKLKLFERGQTGSRLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      V    E             +G +R+     L  ++L   + EF  L+P++
Sbjct: 62  GHDLVAEAERVERAAERFGNRAAGHQRGMAGAIRVTAAEILANHMLMPGIAEFRRLHPEV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ LI+ ++ +D+    AD AIR    +  S L+ RK+       Y +  Y      P +
Sbjct: 122 QVDLIVTDRPLDLEAGEADVAIRSAPALAVSDLVARKVGEYDFALYCSRDYAARRGVP-T 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L  H+LI  G+L         W+          +    + N+  +++     G G+ 
Sbjct: 181 LETLGSHDLIG-GELEMAEGPGMAWMFRAAGG----KAPVTRSNTMSNLLHALKAGLGVG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            +          L+R    +       +      LK+T +++AF +F
Sbjct: 236 PMVCQAADLERELLRCSPVIEEARGASWLITRRDLKDTPRVRAFIDF 282


>gi|169786915|ref|YP_001708727.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|169147076|emb|CAM84730.1| putative HTH-type transcriptional regulator (LysR family)
           [Acinetobacter baumannii AYE]
          Length = 320

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T
Sbjct: 22  MQNKLEMMRIFCVAAESRNFKEAATQLGISPQVVTRAIKELEEQRGEILFYRSTRQIKIT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G +L +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   Y
Sbjct: 82  ADGERLAKQARFAVGSIDALLVKDTKEKRDEMRGTVRLTVSSVLGRKLVIPALAEFATRY 141

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI +  +L +   D+  +  D  IR    +  +  + ++L  ++ ++   P  +     
Sbjct: 142 PDIVVDCVLTDSHSDVIDERIDIGIRFGF-LPDNRYVAKELAKVNFYSVGTPELIDKVGM 200

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  I +LDK+ L    D   K    + W  T  R    P       +   +  Q  + G 
Sbjct: 201 PKKIIDLDKYPLTALVD--HKTGRYWPWTFTESRSF-TPSKPRFITDDLEAEFQAILAGV 257

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G   +P ++V     +  L++I+ +  +P + +Y   P+      +++A  +++  
Sbjct: 258 GFGHMPGFLVLPWLRSGKLIQILHEENSPVWRLYLYRPQRGPTPLRIRALFDYLAE 313


>gi|66043926|ref|YP_233767.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63254633|gb|AAY35729.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|330971657|gb|EGH71723.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 307

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + +S +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDMSAAVASAALKRIERQLGTRLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  L  S  +  G L+++   DLG+N+L   L EF   +P + +
Sbjct: 64  GFLEYARAALGSLEEGRRLLASSQDRCEGVLQLSAPSDLGRNVLLPWLDEFQQQHPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSL+    L        AAP YL+   EP  +
Sbjct: 124 RLLLGDRIADLFRQPVDVALRYGEP-EDSSLVALPVLPDNRRVLCAAPSYLQRHGEPHQV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +HN + F  ++   + D   L    R I          +    + ++ V G G+A 
Sbjct: 183 EQLAQHNCLLF--MLGDRVHDRWTLNDGKREISLTVSGNRFSDDADVVRRWAVAGEGVAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V  +    +L  +M D++     +        + +  +      +  + + 
Sbjct: 241 KSWLDVAADVRAGHLKVLMPDLVGERAPLNLLCAHRAQLSKPVILLLEMLRSRCKQ 296


>gi|53721595|ref|YP_110580.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|254182316|ref|ZP_04888911.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254264408|ref|ZP_04955273.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|52212009|emb|CAH38016.1| LysR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|184212852|gb|EDU09895.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|254215410|gb|EET04795.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 299

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 13  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G   + T        L   L +     P + ++++
Sbjct: 73  AAVRQSLDALRAATADIRSRRA--NGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   ++AD AI              +L   H+    +P +     +     +L 
Sbjct: 131 TS-QDIDPQREHADVAILFGAG-DWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLL 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 189 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 248

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 249 LVDTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 295


>gi|319791549|ref|YP_004153189.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594012|gb|ADU35078.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 330

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 123/300 (41%), Gaps = 6/300 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +    +  F   A  GS   A+  L++S  + S+ ++ LE  +  +LF+R  R ++L
Sbjct: 1   MAINELRSVSTFIKAAELGSLRKASHALNISPQAASKALAQLEEHLDARLFHRTTRVMSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G +L          ++      + +  + +G LRIA      Q +L   ++EF  LY
Sbjct: 61  TDAGQRLLEDVQPALLGMQRALQNARTAKDEFTGPLRIAGPRTTFQPILWRLVEEFCELY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P IQ  ++LD++  +   D  D   RL  P     +I RKL  + M    AP Y +    
Sbjct: 121 PGIQPDVLLDDRVGNWVEDRVDVGFRLG-PSPHEGVIARKLFPLQMVICGAPAYFQRHGV 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S+  L  H    F       +  ++ +   D+   +P +  +  N  +  +Q  + G 
Sbjct: 180 PDSLPALASHRCSAFRHPGTGKVAPWH-VRLGDQVADQPVVPAICSNDEVFELQAVLAGK 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            +  L          +  LV I+ D +    + +  +        + +AF +    +  D
Sbjct: 239 VLGQLAGATAAPYIRSGQLVPILADHMPDFASYFVYFGSRTSQPARARAFIDLAVKRLTD 298


>gi|311695653|gb|ADP98526.1| transcriptional regulator, LysR family protein [marine bacterium
           HP15]
          Length = 300

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 133/296 (44%), Gaps = 7/296 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +FDW++ R F V A  GS + AA+ L +SQ ++ RQ++ LE E+   LF R  RGL LT 
Sbjct: 7   NFDWNRARAFLVTAEEGSLSAAAKALGVSQPTLGRQVAALEEELSTALFERGGRGLELTR 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +     +  +     +    G++ I+ +      +L   L+     YP 
Sbjct: 67  NGLELLAYVRAMGEAASSLSLAATGQAKSIEGEIAISASEITAAYILPPILQRLRYQYPG 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I L+  N+  D+    AD AIR  +P +   LI RK+       YA P  L +   PL
Sbjct: 127 IRINLVASNEASDLRRRAADIAIRNFRPTE-PDLIARKVGEFSATLYARPEILADLPSPL 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L K   I F   +         LA     + E +    + +S+L   Q    G GI
Sbjct: 186 T-EDLCKAPFIGF---LSNNERYVGALAQRGLKLREDQFVA-RTDSHLVHWQMARTGIGI 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            ++P  +    P++ R+ ED +     V+      L+   +++   +F+  +  ++
Sbjct: 241 GMMPVELGDAEPHVERVFEDKVF-GGDVWLVSHRELRMNLRVRTVFDFLTAELSEY 295


>gi|170079311|ref|YP_001735949.1| transcription regulator [Synechococcus sp. PCC 7002]
 gi|169886980|gb|ACB00694.1| transcription regulator [Synechococcus sp. PCC 7002]
          Length = 273

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 121/267 (45%), Gaps = 8/267 (2%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           +++ +S++++ +  LE ++ ++L +R  R +T T  G   +    ++   LE  ++   +
Sbjct: 1   MNVGRSAVNKLVIALENQLQVQLLHRSTRKVTPTPTGLAFYEKCVQILADLEEAELAASQ 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
              +P G LRI   +  GQ  +   + +F+  YP +QIQL L+++ +D   +  D  IR+
Sbjct: 61  LHGEPKGLLRINAPMTFGQMQVAPLVAKFMAQYPQVQIQLTLEDRFVDAIAEGYDLVIRI 120

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
            +P++S+SLI   L    +   AAP YL+    P S  +L  HN + +G           
Sbjct: 121 AEPVESASLISHPLCETKLILCAAPSYLERHGIPQSPGDLAHHNCLRYGPTGNTWH---- 176

Query: 207 WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDNP---NLVRIMEDVI 263
            L      +          N+  ++      G GIA LP +I+   P    L  ++ +  
Sbjct: 177 -LVGPQGEVSVNVSGSFCANNGEALAIAAAAGLGIAQLPQFILDAAPWTEQLTVVLPEYN 235

Query: 264 TPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + + Y  YP     + K+K    F+
Sbjct: 236 HRTLSTYALYPINRHLSTKVKLLCEFL 262


>gi|260778094|ref|ZP_05886987.1| transcriptional regulator LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260606107|gb|EEX32392.1| transcriptional regulator LysR family protein [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 302

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 133/296 (44%), Gaps = 11/296 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M ++ + L +F  V  +GS + AA++L   +SS+SR I+ LE  + IKL  R++R L LT
Sbjct: 1   MDWNLNDLPIFIAVTETGSVSKAAKRLGNQKSSVSRAINRLEESLNIKLLERNSRHLNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L+     +   L   + ++        G LRIATT    + +L  NLK F   YP
Sbjct: 61  SDGEQLYNQLKPLMQNLSAIKEQVPS--QSLCGTLRIATTFAFSREILSPNLKAFTERYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DIQ+ +   +    +  D  D AI+L   +  S    ++L  + +  +  P YL    E 
Sbjct: 119 DIQLSIRSMSHRAHLLEDKLDLAIQLGD-LAPSGFYAKRLTVVKLLWFCTPEYLLANPEL 177

Query: 181 L--SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              +++ L +H  ++F               T             Q++  L +      G
Sbjct: 178 QSATLETLQQH--VSFYHEQENNQSVLYSTMTDGSKQTIEFKHANQLDDVLLVRDMVASG 235

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           SG++LLPD   +    +  LV+I  ++ + P   +   Y     ++ +LKA  NF+
Sbjct: 236 SGVSLLPDIYCRQLCRDGKLVQIAHELNVLPHVNISAVYASKTTHSPRLKAMLNFM 291


>gi|115360779|ref|YP_777916.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286107|gb|ABI91582.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 330

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 122/289 (42%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 47  LLVFEAAARHESYTRAADELSLSQSAISRQVQTLEDQLGVSLFRREGRSVKLTEVGRRYF 106

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 107 VELSGALGRIRGATLQ-AMSHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 165

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-PLSIQEL 186
                ID   D  D AI +        L   +L    + A A+P      +  P +    
Sbjct: 166 SRIGGIDFHTDDLDAAITVGSG-DWPGLHAHRLYNEFLIAIASPDAAGRRKAGPRAPAWA 224

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
               L+    +         W +       E RI    ++ S+  ++Q    G GI L+P
Sbjct: 225 VGQTLLG---VTSNQHAWAEWFSHFGLDHREMRIGPSFELTSH--LIQAVRAGMGIGLVP 279

Query: 246 DYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V+D      LV I  D IT   + Y  YP        L AFR ++ 
Sbjct: 280 KVLVEDELSRNELVSI-GDAITSQRSYYLVYPPENDTLPSLVAFREWLL 327


>gi|121597488|ref|YP_990531.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|254176537|ref|ZP_04883195.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254203451|ref|ZP_04909812.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254205330|ref|ZP_04911683.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|121225286|gb|ABM48817.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|147745690|gb|EDK52769.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147754916|gb|EDK61980.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|160697579|gb|EDP87549.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
          Length = 453

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 149 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 208

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 209 NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 268

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 269 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAVPRHP 327

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 328 DDLPGSHWIGHGGLANLS---YSVFGNEGRSVRIQPPGRLKVKSVLLAHQMALAGAGISA 384

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 385 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 431


>gi|297578971|ref|ZP_06940899.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297536565|gb|EFH75398.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 316

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 133/294 (45%), Gaps = 12/294 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R+++ L LT++
Sbjct: 12  MKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLTKE 71

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +E++ ++E  Q E++++     G++ I+  +   ++ L     EF  L+P++
Sbjct: 72  GEQLFHSYAELFAQIERKQEEVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHPNV 131

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC----R 178
            +++ + +     S    D A+R   P   S  + RKL        A+            
Sbjct: 132 TLRMQVGSGLDYFSQRDLDIALRFG-PQPESDWVARKLARNPSVLCASAELAAKLSTVTP 190

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                ++L +H L++    +P      N    V + +     + L  +   +I+Q  + G
Sbjct: 191 ALAHPEQLKEHPLLSLNHKLPWIFHHHN----VAQKVQFIPTARLCSDELDTIVQATLQG 246

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            GIA LP  +++    +  L+ ++ +       VY  +P+      + +A  ++
Sbjct: 247 MGIARLPRGLMEPLLRSGQLIELLPEWEIEGADVYLLHPQRRFLPERTQALIDY 300


>gi|167724813|ref|ZP_02408049.1| transcriptional regulator lysR family protein [Burkholderia
           pseudomallei DM98]
          Length = 315

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    +              G +RI+ +  +G  +L   +      +P + +
Sbjct: 67  ALRAHAEAMESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHPALTV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+  D+    AD A+R+ +P Q+  LI R +  I +  +A   YL  C  P    
Sbjct: 127 ELALTNRVQDLLRREADIAVRMTRPAQTQ-LIARHIGGIELGLHAHRDYLARCGTPRDAG 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H LI          +        DR         L+ +S L+ +     G+GI   
Sbjct: 186 ELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----ALRTDSDLAQLALIRCGAGIGAC 240

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + K +P LVR++         ++    E L+ + + +A  + +  
Sbjct: 241 QAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAE 288


>gi|160900007|ref|YP_001565589.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365591|gb|ABX37204.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 285

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 132/298 (44%), Gaps = 16/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR+F   AR  + T AA++L ++Q+++S+ I  LE  +G  LF R  RGL LT
Sbjct: 1   MQLPLNALRMFDAAARHLNLTRAADELCVTQAAVSQHIRNLEERLGKPLFRRLPRGLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L    +E + ++E +  ++ E   +P   L +          L   L +F   +P
Sbjct: 61  DEGHALWPAVAESFARIEHSLQQVAE--PRPREVLTVGVVGTFAIGWLIPRLGQFQQQHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L+  N  +D++ +  D A+R        +     L+   +     P   +  R+P
Sbjct: 119 YIDLRLLTHNNRVDLAGEGLDAAVRFGDGAWQGT-RAELLLRAPLTPMCTPALAQRLRQP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L    L+       +  E  +W AT+D+    P       +S L++ +    G+G
Sbjct: 178 ---ADLAGQTLL----RSYRLQEWESWFATLDQSA--PLARGAMFDSSLTLAEAAAQGAG 228

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +ALLP  + +       LVR  E  +  +   +  +  +   +  LK FR ++  + +
Sbjct: 229 VALLPARMFQHLLQQGRLVRPFEQEV-DTGAYWLTHLRSRAPSAALKTFRQWLLAQLQ 285


>gi|152994371|ref|YP_001339206.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835295|gb|ABR69271.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 299

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 129/299 (43%), Gaps = 12/299 (4%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M F+   D +R F  VA+ GSF  A+  L +  S++SR+++ LE ++ I+L  R A  + 
Sbjct: 1   MKFNYSLDDMRCFCAVAQYGSFKQASTALEIPLSTLSRRVAKLEEDLAIRLLNRDAHRVQ 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           LT  G + +  +  ++ +L    + L +   +  G +RI+  ++ G  +L  +   FL+ 
Sbjct: 61  LTHTGQRYYERSLPLFEELNDVAVCLLQDKTQAKGTIRISAPVNFGVQVLAQHFNAFLIE 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YPDI + L L N++IDI  +  D A R+     +   I R L  I      +     +  
Sbjct: 121 YPDIHLDLRLSNQNIDIEEEAIDIAFRVGDH-NADHWIGRHLTNIRFVICGSVRL--DMS 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVL 237
              +  +L+    +      P          + +    +P  +  L+V+    + +    
Sbjct: 178 SLKTPCDLEGFPTVL---CSPMSTWKLQHTISGEMQTHKPNHNIRLKVDDISLLTRAIQD 234

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI  +PDY  +   D+  L +++ +           Y +      +L+   +F+  +
Sbjct: 235 GLGIGFMPDYHAQPLIDSGELQQVLPEWSNQPRGCQMLYRDRDNMPFRLRLLIDFMIKR 293


>gi|172059510|ref|YP_001807162.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171992027|gb|ACB62946.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 305

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 123/294 (41%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AA++L ++  ++S+ I  LE  +G++LF R  RG+ LT  G 
Sbjct: 9   LNALRAFEAAARHLSVKSAAQELSVTPGAVSQMIRTLERHLGVQLFERVNRGILLTAAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +  ++   SG L ++ T       L   L +F    PDI +
Sbjct: 69  DYLPPVRNAFRQIADASQRVAGAAD--SGVLTVSVTPFFASAWLVPRLAQFRDACPDIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+   +   D S D  D AIR     +   L   +L+T+ + A AAP  +     P +  
Sbjct: 127 QIATSHALADFSRDGVDVAIRHGLG-RYIGLCSERLLTVEIVALAAPALVARLGMPATPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +       D   K    +     +D   G PR      +    ++Q  + G G  LL
Sbjct: 186 DLARWP--HLHDAERKGWHIWFDAQRID-DFGPPRGPAF--DDSGLLLQAILAGQGAGLL 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V+D   +  LV++ +      F  Y  YP       K+ AFR +I   A+
Sbjct: 241 PAAMVRDELASGRLVQLADIAWLDDFAYYLVYPPHHAERTKVAAFRRWILEAAQ 294


>gi|289677586|ref|ZP_06498476.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
          Length = 316

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 112/295 (37%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LT+
Sbjct: 7   DVSLDLLRAFEVAARLRSFTAAALELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  + PD
Sbjct: 67  AGEVLFSHVQAGLQSIDSGLIAITEHHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  L   + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESHWLFSEEVFPVCSPQLLAGRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNDALRDFPLLHLRGENINNWFDWAGVFRALDIPQAPAPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWKHLVDDLLDQGLLCRPIAGAAISGQGYYVVLPQRKRRLQIVQQFVDWLASE 298


>gi|295690343|ref|YP_003594036.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295432246|gb|ADG11418.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 303

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 133/293 (45%), Gaps = 7/293 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  VA++GS+  AAE++ L++S + + ++ LE  +G +LF R +R L LT++G    
Sbjct: 10  ITVFVAVAQTGSYAGAAERMGLTRSGVGKAVARLEHRMGRRLFDRTSRALKLTDEGRAFV 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  +L       +    +  G+LR+++    G  LL  +L + +  +P +++ L+
Sbjct: 70  DEVVPLLERLHVAAAPSR--PDEIRGRLRVSSDSAFGAFLLAPSLPQLVARHPRLKVDLV 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + ++  ++  D  D A+R  +P +   L+++ ++   +   A+  YL     P S Q L 
Sbjct: 128 IRDRVDNLLADGFDVAVRFGEP-EHPGLVKQPVLESRLITCASRIYLSGRDAPTSPQALL 186

Query: 188 -KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H  +   D   +    +++L              + +N   S++     G G+  L D
Sbjct: 187 GGHVCVNMIDDASRRPHGWDFLRADGAEHTIAPDCNVTINDASSLLSAARAGFGVVRLLD 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++V+    +  LV I+ +        Y   P     +  L AF  F+   ARD
Sbjct: 247 FMVEAELRSGTLVEILPEWNERRRRAYVYAPAQSHASPSLIAFTEFVRSMARD 299


>gi|197105508|ref|YP_002130885.1| transcriptional regulator, LysR family [Phenylobacterium zucineum
           HLK1]
 gi|196478928|gb|ACG78456.1| transcriptional regulator, LysR family [Phenylobacterium zucineum
           HLK1]
          Length = 318

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 118/291 (40%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F+ AA++L ++  ++S+QI  LE  VG  LF R  +GL LT+   
Sbjct: 13  LNALRAFEAAARHLNFSRAADELAVTPGAVSQQIQNLEDYVGAALFKRTPKGLLLTDAAQ 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E + +L      L  +      +L +          L   L  F   +P + +
Sbjct: 73  TALPALREAFDRLAEAASLLTAAVDGR--RLTLTAAPSFAAKWLAPRLGAFERAHPQVDV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L    + +D++    D AIR     +   L   +L++  +    +P  L   +   + +
Sbjct: 131 WLNAGMELVDLTAGEVDIAIRYGAG-RYPGLEVTRLMSETVIPVISPDLLAQ-QPLDTPE 188

Query: 185 ELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H L+  G  DL   C +   WLA      G       + N    +++    G G+A
Sbjct: 189 DLANHVLLHDGSPDLDDSCPDWSMWLAARGLR-GVDGQRGPRFNQSSLVIEAAANGRGVA 247

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L    + + +     LV  ++      F  Y  +P+A     ++KAF  +I
Sbjct: 248 LAKRALAQADLEAGRLVAPLQIATAVDFAYYLVHPKAKGRLPQVKAFIGWI 298


>gi|167583889|ref|ZP_02376277.1| transcriptional regulator [Burkholderia ubonensis Bu]
          Length = 312

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 127/301 (42%), Gaps = 12/301 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M     D L +F   A  GSF++AA +  L    +S  I  LE E+ I+LF R  R L L
Sbjct: 1   MKMIRIDDLALFVRTAALGSFSNAAREADLLPGQVSAAILRLERELDIRLFARSTRSLKL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G +      EV   L   +  L     +  G L+I+   DLG+N+L   L  F   +
Sbjct: 61  TAEGEQYLPYAHEVLSTLREGRERLHGERQELQGTLKISAPSDLGRNMLLPWLTGFRDAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCR 178
           P + ++L L +  +D+  D  D AIR     +S+S +   L         AAP YL+   
Sbjct: 121 PKLVLRLSLSDLVVDVFRDPVDVAIRYGAA-ESASYVALPLAENNRRVLVAAPAYLERHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P S+ EL  H+ + +  L  +  + + +     R +   +   LQ +      ++ V G
Sbjct: 180 RPSSLDELTMHSCLLYV-LGGRVYDRWVFPGDGGRRLVTVK-GALQCDDADVARRWAVDG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIA      V D+     L  ++ D       +    P   + +  ++     ++ + R
Sbjct: 238 LGIAYKSWLDVCDDVTSGQLEVLIPDQPGEPAPLNLVCPHRRQFSPAVRC----LYAELR 293

Query: 296 D 296
           +
Sbjct: 294 E 294


>gi|262278299|ref|ZP_06056084.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258650|gb|EEY77383.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 310

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 129/304 (42%), Gaps = 14/304 (4%)

Query: 1   MSFDW------DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA 54
           MS         + L VF   AR  SFT AA +L+++Q +ISRQI  LE  +G +LF R  
Sbjct: 1   MSMKIKPLPPMNSLIVFEAAARHLSFTQAANELNVTQGAISRQIRQLEEYLGKELFIRAN 60

Query: 55  RGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKE 114
           R ++LT  G + ++        L   Q   +    +   ++ +ATT  +    L   +  
Sbjct: 61  RNISLTPMGLQYYQTI--YSALLNVAQATAEIKKWQGEHQITVATTNAMAALWLLPKVAT 118

Query: 115 FLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
           F      + ++++     +D+     D A+   +      +    L    +    +P+YL
Sbjct: 119 FQQHNEGVDLRILTTENILDLQKMDFDLALFYCR-TPPLGMKVTTLFPEEVFPVCSPNYL 177

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
              +E    +E+    L+   D     +    W   V+ P+ +P+ + + +N+Y  ++Q 
Sbjct: 178 AQFKEGAPPEEIFGKALLYLDDSQKDWITWAEWFEAVNYPMVKPK-NRVNINNYPMLLQA 236

Query: 235 CVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKN-TGKLKAFRNFI 290
            + G G+AL    ++ D   N +LVR +E V+          P         +K FR+++
Sbjct: 237 AINGQGVALAWGSLIDDYLENGSLVRPVETVLRTEANFSMLEPSDRGVIPSSVKHFRSWL 296

Query: 291 FLKA 294
             + 
Sbjct: 297 LEQL 300


>gi|254437534|ref|ZP_05051028.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198252980|gb|EDY77294.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 301

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 125/292 (42%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++ F +VA  GS + AA +L  SQ ++ RQI  LE ++   LF R ARG  LT+ G
Sbjct: 9   DWSLIQAFLMVAEEGSLSGAARKLGASQPTLGRQIKALEHQLSASLFTRQARGFELTQTG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +   +    +     S + SG +RI  ++      L   + +  L  P I 
Sbjct: 69  AALVAPARAMRDAMGQITLTAAGQSARMSGTVRITASVMTSLYHLPDIIAKIRLAEPAIG 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+++  +   ++    AD A+R+ +P Q   L+ + +  I +   A+  Y         +
Sbjct: 129 IEIVASDDTRNLLYREADIAVRMYRPTQ-LDLVTQHIGDIPLTICASKSYFARKGSLHGV 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ + +                V R   + R      + + +       G GI  
Sbjct: 188 ADLAHHDFVGYDTNSALIDGFREAGIEVTRDFFKVR-----CDDHATYWNLVRAGCGIGF 242

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
               + +D+PN+V I   V  PS  V+    EA+++T +++   + + +  R
Sbjct: 243 AQGSVARDDPNIVAIDPGVAIPSLPVWLVAHEAMRHTPRIRRVWDLLAIGLR 294


>gi|188993307|ref|YP_001905317.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735067|emb|CAP53279.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 308

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 126/287 (43%), Gaps = 8/287 (2%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           MS D  W+  R F  V  +GS + AA QL ++Q ++  +I+ LE  +G  LF R   GL 
Sbjct: 1   MSHDIAWEDQRTFLAVLDTGSLSAAARQLGVAQPTVRARIASLEAALGTTLFTRAITGLI 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            T +   L      +                  +G +RI+ +  +G  +L   L      
Sbjct: 61  PTSEARGLEAAARTMARASAMFVWLASSPPGLVAGTVRISVSDFVGVEVLPAMLARLRQK 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P I  +L+L N   D+     D A+R++ P Q  +L+ RK+  I +  +A   Y+    
Sbjct: 121 HPHIVTELVLSNTPADLLEQEVDIAVRMQPPTQ-GALVARKVGAIALGLFAHRDYIARRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P +++ L +H LI      P        LA    P         + +S+ + +     G
Sbjct: 180 APATVEALLEHELIG-----PDRNRADLSLARALHPHLLRDRLATRTDSHPAQLALARAG 234

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
            GIA+    I + +P LV+++ +V  P+ T +    E L++  +++A
Sbjct: 235 LGIAIAQCPIARADPCLVQVLPEVALPALTTWIVTHEDLRDVPRIRA 281


>gi|271501210|ref|YP_003334235.1| LysR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344765|gb|ACZ77530.1| transcriptional regulator, LysR family [Dickeya dadantii Ech586]
          Length = 319

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 118/300 (39%), Gaps = 9/300 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L +       GS   AA    ++  + S+ ++ LE  +G++L +R  R L+LTE+G
Sbjct: 5   DIRALDILAKAVELGSLRQAAISKGVTSQAASQALAQLEESLGVRLLHRTTRSLSLTEEG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L   T      L+      ++   + SG LRI         +L   + E+   YPDIQ
Sbjct: 65  KQLLEATQPALAVLDRAFARARQVKDEISGPLRIIGPRSAFPPVLWPVIDEYCRRYPDIQ 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            ++ LD+   D  +D  D   R      +  LI R L    +   A+P YL+    P S+
Sbjct: 125 PEVQLDDNVGDWVLDRVDVGFRFGSQ-PTEGLIARPLFRAQLIICASPAYLRTHGVPRSL 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           +EL  H    F    P     F W   +   I        +  NS     +  + G  IA
Sbjct: 184 EELAYHRCSVFRH--PGTDAIFPWYVNIGGEIQTREFPPTVATNSTDIEAEATLTGQVIA 241

Query: 243 LLPDY----IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            L       ++++   LV ++ + +     +Y  Y        +++ F      +  D +
Sbjct: 242 QLSSLSSAALIRE-GRLVPLLTEHVASHLHLYAYYGSRKAQPLRVRKFIELAVERLTDNR 300


>gi|241207220|ref|YP_002978316.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861110|gb|ACS58777.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 302

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 128/289 (44%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   V+   SF  AA++L ++ S+IS  IS LE  +G++L  R  R +  TE+G 
Sbjct: 6   LSQLAVLAAVSEHRSFRAAAKELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L         +++     ++++  KP+G LRI         LL   L +FL LYPDI +
Sbjct: 66  LLLERLRPALEEIDIALEAVRDTRAKPAGNLRITAPRFASDLLLAPRLGDFLNLYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  ++   DI  +  D  IRL + +++  +  R    +     A+  Y ++  +P   +
Sbjct: 126 EIANEDGFTDIVKEGFDAGIRLEESLEADMIAVRISPNLTTVIAASSEYFEHHPKPEHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I            + W    D       +   L V+     +   + G+G+A 
Sbjct: 186 DLVHHRCI---KRRFTNGSIYRWEFEKDGQELVVSVDGPLIVSEDRLALLAALNGAGLAY 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L D  V D   +  LVR++ED   P    +  YP   +    L+AF +F
Sbjct: 243 LFDMRVYDELASGKLVRVLEDWCAPYAGPFLYYPTRRQMRPALRAFIDF 291


>gi|53717106|ref|YP_105255.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|124382394|ref|YP_001024802.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126446644|ref|YP_001079143.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|254175825|ref|ZP_04882484.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|52423076|gb|AAU46646.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|124290414|gb|ABM99683.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126239498|gb|ABO02610.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|160696868|gb|EDP86838.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
          Length = 299

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 13  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGTRLF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G   + T        L   L +     P + ++++
Sbjct: 73  AAVRQSLDALRAATADIRSRRA--NGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   ++AD AI              +L   H+    +P +     +     +L 
Sbjct: 131 TS-QDIDPQREHADVAILFGAG-DWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLL 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 189 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 248

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 249 LVDTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 295


>gi|238796971|ref|ZP_04640475.1| Transcriptional regulator [Yersinia mollaretii ATCC 43969]
 gi|238719231|gb|EEQ11043.1| Transcriptional regulator [Yersinia mollaretii ATCC 43969]
          Length = 303

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ + + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVIDCGSITAAAEQRNQTTSGISRALSRLEKKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLSHARQILGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL+    P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRIGA-LRDSTIHARLLGASRVRILASPDYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI EL  H+L+ F             L      I    I  L  +S  ++    + G G
Sbjct: 180 QSIDELANHSLLGFTQPESLNQWSLPHLPAGRASI----IPNLAASSGETLRLLALQGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  L D++ +++     LV +M +    ++  +   Y    +   ++  F ++   + +
Sbjct: 236 IVELSDFMTREDQLAGRLVEVMANQTLETWQPINAVYYRNTQLAARITCFLDYASEQIK 294


>gi|296115479|ref|ZP_06834112.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977962|gb|EFG84707.1| LysR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 316

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 10/297 (3%)

Query: 1   MSF---DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS    DWD  R F  V  +GS + AA  L L+Q ++  +I  LE  +G  LF R   GL
Sbjct: 1   MSILSPDWDGQRAFLAVLDTGSLSAAARSLGLTQPTVRHRIEALERAIGQPLFSRTVNGL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             T+   +L      +    E        S  + +G +RI+    +G  ++   L     
Sbjct: 61  VPTDDARELAVHVRRMAFASEAFYRAASASGGEIAGTVRISVAEFVGIEVMPRLLAPLRE 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P + ++L+L N++ D+    AD AIR+R+P +  +L+ ++   I +  +A   YL+  
Sbjct: 121 RHPGLAVELVLSNENADLPGQEADIAIRMRRP-RHGALVAKRAGCIPLGFFATASYLERH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P    +L +H LI       +   D ++   + + +GE     L+ +S+ + +     
Sbjct: 180 GVPEGATDLARHTLIG----SDRSRMDQDFTRELQKTLGEKLYFALRTDSHPAQLAMVRA 235

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G GI +    I + +  LVR++  ++      +    E L+++ ++ A    +    
Sbjct: 236 GLGIGVTQLPIGERD--LVRVLPGLVVAELEAWVVAHEDLRHSRRIDAVFGHLVAAL 290


>gi|114563028|ref|YP_750541.1| transcriptional regulator, LysR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334321|gb|ABI71703.1| transcriptional regulator, LysR family [Shewanella frigidimarina
           NCIMB 400]
          Length = 299

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 124/295 (42%), Gaps = 16/295 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  V  +G F+ AA++L L  +++SR+IS LE  +  +L  R  R L LTE+G 
Sbjct: 9   LELIHLFVHVVNAGGFSPAAQELKLPIATVSRKISKLEQSLNTQLIMRSTRKLRLTEEGG 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L       Y+ +        ++  +P   LRI+T + +   +L   + +F   +P IQ+
Sbjct: 69  ALFDR---YYNVVAQFDRICGQTINEPQSTLRISTPVSITSMILIEAINDFSKQHPHIQL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  +N  ID+  +  D AI +      SS +   L  ++   YA+P Y K   E    +
Sbjct: 126 HITQNNSTIDLIDEGVDVAI-VGGAQPDSSWVSTSLGVLNYGLYASPEYAKQLIELRHPK 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  + LI       K    FNW               + L +      ++  V   GI 
Sbjct: 185 QLVDYQLI-------KVWPLFNWTLKHHSGEQYYYDGPAKLTLGDLHGAIRATVGDGGIL 237

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P+  VK       LV ++ D       +   Y +  +   K+K F  FI  +A
Sbjct: 238 YGPELFVKPQLLNEELVPVLADWAGEHRRISILYHQRRQQPLKVKLFIEFIQQRA 292


>gi|182678439|ref|YP_001832585.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634322|gb|ACB95096.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 313

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 137/298 (45%), Gaps = 3/298 (1%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DW+ +R F  V R GS + AA  L L+Q ++   IS LE  +G  LF R  +GLT T+
Sbjct: 4   QIDWELIRSFLAVLRQGSLSAAARSLGLTQPTLGNHISQLEAFLGASLFTRSRQGLTPTQ 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               +      +              +    G +RI  +  +G  +L   L++F+  YP+
Sbjct: 64  AALAILPEAEAMDAAARAFARRASGETDAMRGAVRITASEVMGMEVLPLLLRDFMRTYPE 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L L N+  D+    AD A+R+ +P Q  +L+ R +  I + AYA   YL+    P 
Sbjct: 124 IVVELSLTNRTEDLLRRDADIAVRMARPAQ-GALLTRHIGRIGLGAYAHRDYLETRSCPR 182

Query: 182 SIQELDKHNLITF-GDLIPKC-MEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +I +L  H LI    D +P    E  + +    R I +     L+ +++L+ +     G 
Sbjct: 183 AIDDLKSHVLIGLDRDRLPSVEGEPDDDVGGELRSILQNWPCTLRTDNHLAHLGAIRAGL 242

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           G+ +    + + +P+LV I+ ++I P+   +    E LK + +      ++      +
Sbjct: 243 GLGICQHGVARRDPDLVPILPEIIKPALDCWLAMHEDLKGSQRTLVLFRYLAAALSQY 300


>gi|319790836|ref|YP_004152476.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593299|gb|ADU34365.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 317

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 126/299 (42%), Gaps = 9/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+  R F  V R GS + AA  L ++Q ++ R ++ LE  +G+ LF R   GL  TE
Sbjct: 4   NIGWELYRSFLGVLREGSLSGAARALGITQPTVGRHVAALEAALGVVLFTRSQVGLMPTE 63

Query: 62  QGSKLHRVTSEVY---HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
               L      +      LE       E   K  G +RI+ +  +G  +L   +      
Sbjct: 64  VALALQGHAEAMESTAASLERAATSQGEEGGKIRGVVRISASEVIGVEVLPPIVARLREA 123

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P ++++L+L N+  D+    AD A+R+ +P Q   L+ R++  I +  +A   YL    
Sbjct: 124 HPALKVELVLTNRVQDLLRREADIAVRMVRPKQ-EQLVARRVGQIELGFHARKDYLARRG 182

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P   ++L  H +I +             L    R         L+ +S L+ +     G
Sbjct: 183 TPRKQEDLAAHAVIGYDQPSAFVRNAGKALPGYGRDAF-----SLRTDSDLAQLALIRAG 237

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +GI +    + + +  LVR+M    +     +    E L+N+ + +   + +    + +
Sbjct: 238 AGIGICQAGLARRDAALVRLMPRAFSMKLETWITMHEDLRNSPRCRVAFDALVDGLQAY 296


>gi|261251441|ref|ZP_05944015.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
 gi|260938314|gb|EEX94302.1| transcriptional regulator LysR family [Vibrio orientalis CIP
           102891]
          Length = 295

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++I  LE  +G +L  R  R +T TE
Sbjct: 1   MDWIQSVQSYIRVVDEGSFNGAARKLNTTSSAISKRIHWLEERIGAQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  S  P G L+I  T+ +G   L   L +FL +YPD
Sbjct: 61  AGALFYERAKVQLDGWQSIVDETRSVSETPVGLLKIGATLAVGSKFLVQYLNDFLKMYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQLI       +     D  I R  + + S S     L       YA+P Y+K   EP
Sbjct: 121 IRIQLITT-TPGQLPALSLDLFISREIEQLNSLSFKATPLFEHKAGFYASPDYIKQHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L +HN++ +G+   +      ++ T  R +           +  ++      G G
Sbjct: 180 QNVEQLAQHNMLNWGERTQR-----EYILTNGRKLSL--SGNFATTNPEALFYAAKSGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I L  D ++K+      L RI+  +      VY  YP+      + K F +++  + 
Sbjct: 233 ILLTNDVMIKEELRVGTLKRILPSITADEALVYAYYPKLDYQHTRTKLFLDYLKARL 289


>gi|109897697|ref|YP_660952.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109699978|gb|ABG39898.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 293

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 128/288 (44%), Gaps = 14/288 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L +F  VA+  SFT AA+ L +S+  +S QI  LE ++   LF R  R ++LTE+G+
Sbjct: 8   FERLILFSEVAKQLSFTRAAQVLSISRGYLSEQIRKLEQDMDKHLFIRSTRHVSLTEEGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    +++   L   + E++  +    G+LRI       Q  +     EF   YP I +
Sbjct: 68  QLLAGMNQIKRSLLALEREIRHDNDALEGELRITAPNQFAQRYILDLCAEFQACYPAISV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +       D+S +  D A R  K     +++ +KL        A+P YL    EP  I+
Sbjct: 128 SVDCSYTTYDLSQNDFDLAFRATKA-PPQNMVAKKLFNYRHTCCASPEYLAKHGEPKRIE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243
           +L  H  +      PK    F               S L VN    + ++ V G GI L 
Sbjct: 187 DLGAHICLC---QSPKTHWQFA-------EHKVNINSQLAVNDNFILKKHAVAGKGIILV 236

Query: 244 --LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
                     +  LV ++   ++P F +Y  +P+ +  + +LKAF  F
Sbjct: 237 PEYVVEEEVSSGELVPLLGSALSPDFAMYLIHPQLIHQSARLKAFIAF 284


>gi|325915661|ref|ZP_08177966.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538078|gb|EGD09769.1| transcriptional regulator, LysR family [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 290

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 12/294 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +++ LR F  VA +G  + AA +L +++S +SR++  LE  +GI+L  R  RG  +TE 
Sbjct: 1   MEFEDLRTFVEVADAGGVSPAARRLGVAKSIVSRRLIRLEDALGIQLLARTTRGAAVTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+      + +  +++  +  +  +     G+LRIA  +  G   L   L E    +P +
Sbjct: 61  GATFREHAARMCAEMDVARETILPA-GDLRGRLRIAAPLTFGPTHLAPVLAELASRHPAL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+     ++ +DI  D  DCAIRL   +  S+L+ R++  +     A P YL+   EP +
Sbjct: 120 QVHACYSDRFVDIVADGFDCAIRLGY-LTDSNLVARRIAPMRGSLMATPAYLRKHGEPDT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q L  H  +  G    + M+        D+ +        + ++  +I    + G GIA
Sbjct: 179 PQALLTHEALLQGTESWRFMDG-------DKLVTIHPRGRFKADNGTAIAAAALAGLGIA 231

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LPD++V ++     LVR+M    +P   +Y     A     K++   + +  +
Sbjct: 232 ALPDFLVAEHLASGALVRVMTKYPSPEAGLYVVRAPATHPARKMRVLTDLLIER 285


>gi|311278899|ref|YP_003941130.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
 gi|308748094|gb|ADO47846.1| transcriptional regulator, LysR family [Enterobacter cloacae SCF1]
          Length = 306

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 122/293 (41%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   A  GSF+ AA +  L  + +S  I  LET + I+LF R  R L LT +G 
Sbjct: 4   LEDLTLFVRAAALGSFSVAAREAGLPPAQVSSAIKRLETTLNIRLFARSTRSLRLTPEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++   L+    ++Q    +  G L++A   DLG+NLL   +++F   YP +++
Sbjct: 64  TWLPYATQMLDTLQAGLQKIQTPDDEVRGTLQVAVPSDLGRNLLLSVMQDFRRRYPALRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +++  +   D+  D  D A R       +S I   +         A+  +L    EP + 
Sbjct: 124 RILFSDHLTDVFKDPVDVAFRYGNN-DDASFISLPVAPQNRRVLVASSAWLAAHGEPHTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL  H  +T+  ++   + D   L    R       S +  +    I +  + G G+A 
Sbjct: 183 QELAGHPALTY--VLRGRLYDRWTLLRDGRVHEVQMNSAIMSDDAEVIRRLAIAGEGVAN 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V D+     L  ++      S  +    P   + +  ++   + +  K
Sbjct: 241 KSWLDVSDDIREGRLKILLPQYQGDSVPLNMICPHRKQLSTAVRLLYDAVREK 293


>gi|295700327|ref|YP_003608220.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439540|gb|ADG18709.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 292

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA++L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G 
Sbjct: 7   LNALRAFESSARHLSFTRAAQELNVTQAAVSQQVRSLEERLGTALFKRLPRGLAMTDEGL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L  V SE + ++E    +           L +          L   LK F   +P +++
Sbjct: 67  ALRPVLSEAFDRIEAVLKQFDGGHFHE--VLTVGVVGTFAVGWLMPRLKSFREAHPFVEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+ +N  +D++ +  D AIR        SL   +L+   +     P        P    
Sbjct: 125 RLLTNNNLVDLATEGLDFAIRFGDGTWPGSL-ATRLLDAPLALLCTPETAARLTRP---D 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  +  NW A     I    +     +S   +++  + G+GIAL 
Sbjct: 181 DLANETLL----RSYRMDDWMNWFAAAG--IAPRPVRGPVFDSSRLMVEAAIQGAGIALA 234

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  + +       LVR   DV   + + +    +    T  +  F  ++  +A
Sbjct: 235 PALMFEREINTGRLVRPF-DVEVKAGSYWLTCLKGKPMTPAMLLFSQWLAKEA 286


>gi|66046626|ref|YP_236467.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257333|gb|AAY38429.1| Helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae
           B728a]
 gi|330972502|gb|EGH72568.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 294

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 122/290 (42%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  G 
Sbjct: 4   IEDLRLAVTLSRCESLSAAARILNVSPPALSMRLRKLETQLGITLASRDARRLSLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R ++++  +LE      ++   +  G LR+A     G+  +   L  F  L+P + +
Sbjct: 64  RFARESAQLLEQLEALPESFRQRDERLVGTLRLAAPFGYGRQRIAPLLARFARLHPQLCL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L           +D  I +   +  S  I   L   H    A+P Y++    P + +
Sbjct: 124 QLDLRETPW-PDRHDSDAVIHIGS-LNDSQWIAMPLAQNHRWLCASPAYIEQHGVPSTPE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I   +          W  +  +     RI   L  N      ++   G GI L
Sbjct: 182 QLAGHRCICIRENDEDVTL---WHLSKGQTKKTLRIEPALLSNDGSVARRWAEQGLGIVL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D   +  LVR++ D    S  +    P     + +++A   F+
Sbjct: 239 RSQWDVSDAIASGRLVRVLADWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|302186987|ref|ZP_07263660.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 307

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + +S +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDMSAAVASAALKRIEGQLGTRLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  L  S  +  G L+++   DLG+N+L   L EF   +P + +
Sbjct: 64  GFLEYARAALGSLEEGRRLLASSQDRCEGVLQLSAPSDLGRNVLLPWLDEFQQQHPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSL+    L        AAP YL+   EP  +
Sbjct: 124 RLLLGDRIADLFRQPVDVALRYGEP-EDSSLVALPVLPDNRRVLCAAPSYLQRHGEPHQV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +HN + F  ++   + D   L    R I          +    + ++ + G G+A 
Sbjct: 183 EQLAQHNCLLF--MLGDRVHDRWTLNDGKREISLTVSGNRFSDDADVVRRWAIAGEGVAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V  +    +L  +M D+I     +        + +  +      +  + + 
Sbjct: 241 KSWLDVAADVRAGHLKVLMPDLIGERAPLNLLCAHRAQLSKPVILLLEMLRSRCKQ 296


>gi|126444309|ref|YP_001061839.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126223800|gb|ABN87305.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 301

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 15  LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 74

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G   + T        L   L +     P + ++++
Sbjct: 75  AAVRQSLDALRAATADIRSRRA--NGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 132

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   ++AD AI              +L   H+    +P +     +     +L 
Sbjct: 133 TS-QDIDPQREHADVAILFGAG-DWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLL 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 191 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 250

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 251 LVDTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 297


>gi|84387310|ref|ZP_00990330.1| substrate-binding transcriptional regulator, LysR family [Vibrio
           splendidus 12B01]
 gi|84377759|gb|EAP94622.1| substrate-binding transcriptional regulator, LysR family [Vibrio
           splendidus 12B01]
          Length = 294

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 118/290 (40%), Gaps = 15/290 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            ++L +F  +A+  +FT AAE+L +S+S +S QI  LE ++   L  R  R + LT++G 
Sbjct: 7   IERLILFVELAQQLNFTKAAEKLGISKSYLSEQIKRLENDLQCPLLVRTTRSVRLTQEGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +    +  ++   +  + E      G LR+       +  L    ++F   YP+I+ 
Sbjct: 67  RALQQGLTIRSQVLQLERSVSEQHDIVKGLLRLTAPKMFTEVYLFDICQQFRQQYPEIRF 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++     + +++ D  D A R        +++ + L++      A P YL     P ++ 
Sbjct: 127 EINSSYTNFNLNQDDIDIAFRATNTPPD-NMVAKHLISYQHDLVATPSYLDQFGRPTNVS 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  +         +    W     +         L  N    + Q  + G GI  +
Sbjct: 186 DLRDHQCLA-------TLHQTEWPL---KSANIDVSGWLSSNDNHLLKQQAMAGGGIIRI 235

Query: 245 PDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFI 290
             Y V        L +++ D       ++Y  YP+ +    K + F  F+
Sbjct: 236 ASYYVAKEVELGELEQVLPDECLQQGNSIYLFYPQVIYPAKKHQVFVKFV 285


>gi|109897762|ref|YP_661017.1| LysR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109700043|gb|ABG39963.1| transcriptional regulator, LysR family [Pseudoalteromonas atlantica
           T6c]
          Length = 324

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 130/291 (44%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                L+V   VA   S + AA QL +S S+ S  +  +ET++G +LF R  R + LT +
Sbjct: 1   MKIADLQVLLKVAELHSISAAANQLDMSSSAASVALKRIETQLGAQLFVRTTRQIRLTSE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +   +  +    L+  Q+ + E     SG++R+A + ++G+NL++  L   +  +  +
Sbjct: 61  GERYLPLCQQALDLLQQGQVLINEEQQSISGEVRMAVSSEMGRNLMRVLLNNLMRKHCAV 120

Query: 123 QIQLILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++L + +   D   D  D A+R   +   +  +L   K+  I     AAP Y+    EP
Sbjct: 121 TLRLHVSDSRADFYRDGVDVALRAITKDAAKELNLYGFKICNIPHVLCAAPSYIAEHGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  EL +HN + +   + + + D   L   D+       S   VN    + ++CV G G
Sbjct: 181 QTPDELPQHNALLYK--LYEVVHDGWELYQNDQQYKIKMNSDRAVNDGDIVRRWCVDGEG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           IA      V  +     L R+M +   P   ++   P     +  ++  R+
Sbjct: 239 IAKKSAIDVAQDLLAGQLKRLMPEYKIPLTQMWLVLPSRQLISPAIRLIRD 289


>gi|254477319|ref|ZP_05090705.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
 gi|214031562|gb|EEB72397.1| transcriptional regulator, LysR family [Ruegeria sp. R11]
          Length = 292

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VA+ G+ + AAE L +  +++ R +  LET +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVAKMGTVSGAAEVLGVHHATVIRHVDALETRLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+      SG+L + T++     LL   L EF   +PD+ 
Sbjct: 63  QDLLRVAQATDDQFGQLVGRLKGHGDAVSGEL-VVTSLSAMSALLVPALTEFQNQHPDLI 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+ +  ++   +    A  AIR   P +    + +  +T   + YA+  Y+        +
Sbjct: 122 IRFLTGSRLFRLEYGEAHVAIRAGAPPEQPDNVVQPFMTQQHNLYASQGYIDKYGPLKGL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ++  H  +   D+  +      WL    R          +  + +S+    + G+GI  
Sbjct: 182 DDMANHRFVANDDVESRAPYS-KWL----RAHAPESALSFRCVAGVSMQDALIAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L  +     P+LVR+M+ +   +  ++      L  T K++ F  F+  +A+ W
Sbjct: 237 LTQWEAARYPHLVRMMDPLPEWTSDLWLVTHVDLHRTPKVQTFLKFLKAEAKAW 290


>gi|149911159|ref|ZP_01899784.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149805760|gb|EDM65757.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 311

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + +F  + +S     AA++L +  ++++R++  LE +VG KL +R AR   LT +G 
Sbjct: 15  IDDIVLFIHIVKSQGLAGAAKKLKIPAATVTRRLKKLEEKVGCKLIHRSARQFRLTTEGQ 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  + E+   EL   +    G L +    ++    LQ    +F+  +P+IQ+
Sbjct: 75  VYFESFTDLVERFESISKELSSEANSLEGSLTVLAPTNISIGYLQPMWSQFIGDHPEIQL 134

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L+N + D+  ++AD A+R+  P + SSL Q K+ +I     A+  YL       S++
Sbjct: 135 NLKLNNDNKDMVEEHADIALRIG-PQRDSSLYQIKVGSIPSVLVASHKYLAKSAPLNSLE 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  IT   +       F    +  +    P  S L+VN      ++   G GIALL
Sbjct: 194 DLKHHKCITVSHMP---TWKFQHSKSKLKQTINPE-SSLKVNDISIASKFAKDGHGIALL 249

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P   V +      L   + D   P+  ++  +P     + K K  +  I
Sbjct: 250 PPSEVLEYLHCEQLFMPLPDWQGPARDIFLIWPSGKLLSAKAKCLKEHI 298


>gi|330503734|ref|YP_004380603.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918020|gb|AEB58851.1| transcriptional regulator, LysR family [Pseudomonas mendocina
           NK-01]
          Length = 272

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 122/265 (46%), Gaps = 7/265 (2%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +S + IS++I  LE  +  +L +R  R + LTE G K  R  +    +++    EL    
Sbjct: 1   MSPAFISKRIRILEETLQARLLHRSTRSIALTEAGEKTQRWATRFLDEMDDFVSELTTVR 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
             P G L I ++   G+N +   + +    YP+++++L + ++ +DI  +  D  IR+  
Sbjct: 61  QIPRGLLHICSSFGFGRNHVAPAVAQLSSAYPELEVRLDVFDRVVDIVAEGFDLEIRVGD 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            +     I RKL +      A P YL+    P +I EL  H+ +   +           L
Sbjct: 121 DLPGHH-IGRKLASNQRVLCATPAYLQKRGIPTAISELAHHDCLVIKERSNPFGLWR--L 177

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITP 265
           +TV+R       S L  N+   ++Q+ +   GI L   + V+   +   LVR++ +  T 
Sbjct: 178 STVEREEIVRVGSRLSSNNGEIVLQWALNDLGIILRSLWDVQPLLEQGRLVRVLPEY-TQ 236

Query: 266 SFTVYFCYPEALKNTGKLKAFRNFI 290
           S  V+  YP  L ++ KL+    F+
Sbjct: 237 SANVWAVYPTRLADSAKLRVCVEFL 261


>gi|227819487|ref|YP_002823458.1| LysR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227338486|gb|ACP22705.1| putative transcriptional regulator, LysR family [Sinorhizobium
           fredii NGR234]
          Length = 301

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 122/290 (42%), Gaps = 12/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V R+GS + AA +++L+QS++SR +  LE ++G  LF RH + L  TE      
Sbjct: 19  LSAFEAVLRTGSISAAAREVNLTQSTVSRLVQSLEEQLGRPLFERHRQRLIPTEAAQAYG 78

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +     ++   +E   +     G L +A     G   L   L  FL   P + I L 
Sbjct: 79  RDVTRALDLIQRGSMEFSANPG--GGALSLAILPAFGTRWLAPRLGRFLTKNPGVTINLA 136

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              K  + + +  D AI         +     L    + A  +P  L       S+ ++ 
Sbjct: 137 TRLKRFNFAAEGFDAAIHFGTDDWRDAGHMM-LFEERLTACISPALLAEHPV-RSVNDMA 194

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L+    L  +      W A  D     P ++ + ++ + ++ Q  + G G+ALLPDY
Sbjct: 195 GLPLL---QLETRSNAWATWFAAQDAEA--PSVTGMLLDQFATMTQAAISGLGVALLPDY 249

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +     +   LV +++  I  S   +  +P +      L+AFR+++  + 
Sbjct: 250 LADIEIEEKRLVPLLKRAIPGSGAYWLVWPRSRAKYPPLEAFRSWLAAEV 299


>gi|149187221|ref|ZP_01865519.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
 gi|148838757|gb|EDL55696.1| transcriptional regulator, LysR family protein [Vibrio shilonii
           AK1]
          Length = 296

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +L+ + S+IS+++  LE  +G++L  R  R +T TE
Sbjct: 1   MDWISCINTYIRVVEEGSFNGAARRLNTTSSAISKRVHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++ + +   + ++   E +  +  P+G L+I  TI +G   L   L +FL  YPD
Sbjct: 61  AGALFYQRSKDSLDRFQSIIDETRSVNETPAGLLKIGATIAVGSKFLVQYLNDFLTQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQL        +     D  I R  + + S S+ Q  L    +  YAAP Y++    P
Sbjct: 121 IRIQLTTTI-PGQLPDTNLDVFISRELETLNSLSMRQTSLFEQRIGFYAAPSYIREFGAP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI EL +HN++ +G+   +  +       + +             +  ++      G G
Sbjct: 180 QSIDELKQHNILIWGERPQREYK-------ISKTQRVMLSGNFATTNPEALFYAAKNGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +  D ++K++     LVR++ ++     TVY  YP+      + K F ++I ++ 
Sbjct: 233 VLISNDVMIKEDVKSGALVRVLPEIQALDSTVYAYYPKLDYEHTRTKLFLDYIKMRL 289


>gi|322515102|ref|ZP_08068109.1| glycine cleavage system transcriptional activator [Actinobacillus
           ureae ATCC 25976]
 gi|322118908|gb|EFX91090.1| glycine cleavage system transcriptional activator [Actinobacillus
           ureae ATCC 25976]
          Length = 296

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 16/291 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  +FT AA+ L ++Q+++S QI  LE  +G+ LF+R  R L LTE G+
Sbjct: 8   LNALKAFESAARHLNFTKAADDLFVTQAAVSHQIKLLEDFLGVSLFHRRNRLLELTEIGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  ++ +   +++  + +    L I+TT   G + L   L EF   YPDI++
Sbjct: 68  QYFEDIQPLLEQIASATEKVKLKNSRQI--LSISTTPSFGMHWLVPRLNEFHKKYPDIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           +L   ++D  +     D AI         +L   +LV   +   A+P YL+    P+S  
Sbjct: 126 RLTTASQDEGLLGKDIDVAIYYGSG-NWQNLEAIELVQARIMILASPEYLREN--PISKP 182

Query: 184 QELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L+  NLI        K M +   L  +D   G P  S   +      +Q      G+ 
Sbjct: 183 EDLEGKNLIHVCSHTKWKQMAEHLNLNHIDAESG-PMYSTTSMG-----IQAAKHRQGVV 236

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFI 290
           +    + +D      ++E  +T  +     Y  YP  +K   K++ F  +I
Sbjct: 237 VANRMLAQDEIEEGSVIEPFVTDVYDEKAFYVVYPPQMKEVAKVQHFVEWI 287


>gi|167564820|ref|ZP_02357736.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 304

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 122/294 (41%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +GIKLF R  RGL LT  G 
Sbjct: 12  LNALRTFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGIKLFERLPRGLALTADGL 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +PDI I
Sbjct: 72  AYFSDVQRALNLIGDATDRLVKRRS----SVTISTTPSFASRWLIPRLASFGDEHPDIDI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + ++A  +P  L +     S +
Sbjct: 128 RVIADSQFATFRNDGVDLAIRYGKPPFGKGLVTRFLFPVDIYAVCSPSLLTSPGALASPR 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+     +        +LA +   +        + N     +   + G G+AL+
Sbjct: 188 DLAGHVLLHDAHDL-----WPEFLAAMPERVAIDPHRGPRFNQSSLAIDAAIAGHGVALV 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V  +     L R+ +  +  S   +  YP   +    +     ++   AR
Sbjct: 243 SDQLVGRDIEAGRLCRLFDFALPLSVGYHIVYPNEPRRPNDIATMEAWLIRHAR 296


>gi|328544495|ref|YP_004304604.1| transcriptional regulator protein, LysR family protein [polymorphum
           gilvum SL003B-26A1]
 gi|326414237|gb|ADZ71300.1| Probable transcriptional regulator protein, LysR family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 293

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 130/288 (45%), Gaps = 7/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VARSG    A+ +L L+ ++++R+++GLE  +   L  R   G  LT  
Sbjct: 1   MNWDDVRMFLAVARSGQILAASRRLGLNHATVARRLTGLERTLKTSLLERSTSGCVLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  ++ +   EL ++ +  SG +RI      G   L   L +    +P++
Sbjct: 61  GERFMTHAERMEAEMLSAASELTDTDIDVSGTVRIGAPDGFGVAFLAPRLGDLTARHPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +QL+   +   +S   AD AI + +P +   LI RKLV   +  YA+  YL     P +
Sbjct: 121 TVQLVPVPRSFSLSRREADIAITVDRP-EHGRLIARKLVDYALGLYASADYLTRRGTPKT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H+L+ + + +                I     +  ++ S L   +    G+GI 
Sbjct: 180 AAELRGHDLVGYVEDLLYSPS-----LNYGTEIVRDWSARFEIASALGQTEAVRAGAGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +L  +I + + +LV ++ ++       +    E+ +    +   ++++
Sbjct: 235 ILHAFIARMDASLVPVLPEIRI-HRAYWMVTHESSRPLRHVSVVQDYL 281


>gi|160876400|ref|YP_001555716.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|217972405|ref|YP_002357156.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|304410182|ref|ZP_07391801.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307302107|ref|ZP_07581865.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|160861922|gb|ABX50456.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|217497540|gb|ACK45733.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
 gi|304351591|gb|EFM15990.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306914145|gb|EFN44566.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|315268590|gb|ADT95443.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 299

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 130/300 (43%), Gaps = 20/300 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  +  +GSF+ AA++L +  +++SR+++ LE ++  +LF R  R L LTE+G
Sbjct: 8   ELQLVYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +    V  + +         S KP G LRIA  I +   +    L EF  LYPDI+
Sbjct: 68  LALFQRYQSVVAQFDEL---SGAGSDKPEGTLRIAAPISIISIVFIQALNEFGRLYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   N+ +D+     D AI +      SS +   L  +    +A P YL    +    
Sbjct: 125 LHISQSNELVDLIDKGIDVAI-VGGAQPDSSWVSSTLGELDYCLFATPEYLAQAPKLEHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGS 239
            +L+ H LI       K    FNW   +  P GE       + L +      +Q  +   
Sbjct: 184 DDLEAHQLI-------KVWPLFNW--HLKHPSGESFYFNGPTKLTLTDLHGAIQATLGHG 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI   P+  VK       L  ++ + I     +   Y +  +   K++ F  F+  KA +
Sbjct: 235 GILYGPELFVKQQIKEGKLKVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPE 294


>gi|124383244|ref|YP_001025021.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|238561886|ref|ZP_00441302.2| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|251766800|ref|ZP_02264996.2| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254356136|ref|ZP_04972413.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|148025119|gb|EDK83288.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|238523716|gb|EEP87153.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243064709|gb|EES46895.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|261827193|gb|ABM98518.2| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
          Length = 448

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 144 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 203

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 204 NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 263

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 264 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAVPRHP 322

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 323 DDLPGSHWIGHGGLANLS---YSVFGNEGRSVRIQPPGRLKVKSVLLAHQMALAGAGISA 379

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 380 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 426


>gi|160873594|ref|YP_001552910.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160859116|gb|ABX47650.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315265823|gb|ADT92676.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 303

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 123/293 (41%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L++   +A   S + A++++ ++ ++ S  +  LE ++G +LF R  R L LTE+G 
Sbjct: 4   LNDLQLALRIAALESLSAASKEIGMTPAAASAALQRLEKKLGCQLFARSTRRLQLTEEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LET    L E   +  G++R+A   D+G++ ++  L E +   P++ +
Sbjct: 64  IFLDSAKPALAILETASANLAEHRGELKGEVRLALPSDIGRSQIRAWLDELMDSAPELTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL   +   D+       A+R  + +  S+L +R+L        A+P YL     P ++ 
Sbjct: 124 QLYFGDHMTDLIDQNIHLALRYGQ-LDDSNLKRRQLAMTPRVLVASPAYLAQHGTPSTLN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H ++          +    L+    P+          N    I  + + G GIA  
Sbjct: 183 ELSQHAVLILNRGGEPWQKWK--LSHNGAPVEIEVRGQRFCNDGAVIRDWALSGRGIAYK 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               V  +     L  ++ D I P   +   Y +    + K++    F+  K 
Sbjct: 241 SWLDVAQDVTEGRLHLVLADKIAPPIPLQLVYLQTDYPSHKIRRTIEFLVEKL 293


>gi|319792641|ref|YP_004154281.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595104|gb|ADU36170.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 322

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 122/298 (40%), Gaps = 9/298 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +   +   GS   AA  L +  S I++++  LE  +G +LF R  R L++T +G  +
Sbjct: 10  DLELVLAIRDQGSLAGAAATLDVVPSVITKRLGALEGRLGQRLFDRTTRRLSVTAEGEAV 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +       + EL E   +  G +R+A T   G+  L   L  F   +P +QI+L
Sbjct: 70  CLHARALLEGFAALESELGERQNELVGTIRLAATFGFGRRWLGPALAAFQARHPALQIEL 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQS--SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L  +  D+  +  D A+ L    Q   +  + R++        AAP Y+     P ++ 
Sbjct: 130 LLTEQLPDLGAEGYDGALWLWAVQQHRAADWVTRRIARNQRVLAAAPSYIAQHGMPATVD 189

Query: 185 ELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
            L  H  +     G++  +    +      D      R+   L  NS   +  +C+ G G
Sbjct: 190 ALTSHACLVARENGEVNQRQFVLWTLRHVRDGSTARVRVQGPLASNSGEMVRDWCMAGHG 249

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + L   + +     +  LVR++     P   +++  P   K   +++   + +  + R
Sbjct: 250 VMLRSLWDIAPQLASGELVRVLPQYTMPDADIHWIAPWRPKTPRRVRLLVDHLAEQFR 307


>gi|319427235|gb|ADV55309.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 299

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 130/300 (43%), Gaps = 20/300 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  +  +GSF+ AA++L +  +++SR+++ LE ++  +LF R  R L LTE+G
Sbjct: 8   ELQLLYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +    V  + +       +   KP G LRIA  I +   +    L EF  LYPDI+
Sbjct: 68  LALFQRYQSVIAQFDELSGVGSD---KPEGTLRIAAPISIISIIFIRALNEFGRLYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   N+ +D+     D AI +      SS +   L  +    +A P YL    +    
Sbjct: 125 LHISQSNELVDLIDKGIDVAI-VGGAQPDSSWVSSTLGELDYCLFATPEYLAQAPKLTHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGS 239
            +L+ H LI       K    FNW   +  P GE       + L +      ++  +   
Sbjct: 184 NDLEAHQLI-------KVWPLFNW--HLKHPNGESFYFNGPTKLTLTDLHGAIESALDHG 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI   P+  VK       L  ++ + +     +   Y +  +   K++ F  F+  KA +
Sbjct: 235 GILYGPELFVKQQIKEGRLKVLLPEWVGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPE 294


>gi|325275341|ref|ZP_08141292.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099532|gb|EGB97427.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 295

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 140/296 (47%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ LR F  + RSG    AA++L+ + S+++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FNWNDLRFFLELQRSGRLLTAAKRLNTTHSTVARHIERIEESLGTALFVQHAQGYELTPS 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ ++   P GK+R+  T  +G       +      YP +
Sbjct: 62  GQALLKHAEAMENVALLAQEEITQAIT-PLGKIRLGVTEGIGIMFFTPRMNALFERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P  +  LI RKL    +  YA+  YL       +
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERP-NADLLITRKLTDYRLALYASQGYLDRAPPLRN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H+ I + D +    E    L  ++     P +   +  S ++       G GIA
Sbjct: 180 REDLARHSWIGYVDDLLFSQE----LLFLNSFCRAPNV-VFRSTSVIAQQVAARAGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LP+Y+ + +P LVR++    T   + + C    L  + +L+   +++     + +
Sbjct: 235 VLPNYMARHDPTLVRVLPG-ETIQRSYWICTRRELHKSVRLRVVWDYLLALCAEQQ 289


>gi|262376435|ref|ZP_06069664.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145]
 gi|262308574|gb|EEY89708.1| LysR family transcriptional regulator [Acinetobacter lwoffii SH145]
          Length = 294

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 138/294 (46%), Gaps = 10/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD LR F V+AR+ + T+AA  + +  S+++R+I  LE  +G +LF R A G  LT
Sbjct: 1   MKVDWDHLRFFLVLARAKTLTNAARLIGVEHSTVARRIQALENTLGTQLFKREATGYELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L     ++    E + I++ +      G++RI      G   L   L EF   YP
Sbjct: 61  SEGLALVPRVEQM----EQSFIQIDKRHDPLQGRVRIGAPEGFGTAFLARLLAEFSQHYP 116

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I LI   K I +S   AD  I + +P     +I R L    +  Y + HYL+   E 
Sbjct: 117 LLTIDLIPVPKAIKLSHREADIVIAIDRPKSGPYIITR-LSNYCLKLYGSQHYLQQNPEI 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H  + + D +      ++        +     +C + NS L+       G+G
Sbjct: 176 KKLEDLQQHRFVDYIDDLVYSTALYSLER-----LPLQVSACFRSNSILAQEIAVRAGAG 230

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+LP ++V D   L  ++   ++ + T +      L++  K+K   +F+  +A
Sbjct: 231 LAILPKFLVNDKSELKEVLGQQLSFTHTFWMLTLVDLQHEPKIKLVWDFLRKQA 284


>gi|218660834|ref|ZP_03516764.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli IE4771]
          Length = 262

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 124/257 (48%), Gaps = 8/257 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  V   G F+ AA    ++ S++S+ ++ LE  +G++L  R  R L LT +G   
Sbjct: 11  EMEIFVSVVERGGFSAAATVRRMTPSAVSKLVARLEARLGVRLVNRSTRRLQLTPEGCAF 70

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +  +  +   +   + +   S  + +G++RI T+   G ++L   +  F+ L+P + + +
Sbjct: 71  YERSIAILADIAEAERQ-ASSGEEAAGRIRINTSGSFGNHVLAPLVPAFMALHPAVTLDI 129

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +K ID+  + AD AIR   P++SSSLI RKL        A+P YL    EP ++ +L
Sbjct: 130 AHTDKVIDLMEERADVAIRAG-PLKSSSLIARKLGATGKIIVASPDYLGRHGEPRTLADL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +H  I F     + +E +    +    +  P    +QV    ++    +   G+A L  
Sbjct: 189 RRHCRIGFS--YARAIEGWPMRES-GETVTIPITPGIQVADGEAMRHLALSAPGLARLAA 245

Query: 247 YIVKDN---PNLVRIME 260
           + V+ +     L  ++E
Sbjct: 246 FTVRADIEAGRLAPVLE 262


>gi|242311607|ref|ZP_04810624.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|242134846|gb|EES21249.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 453

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 149 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 208

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 209 NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 268

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 269 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAVPRHP 327

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 328 DDLPGSHWIGHGGLANLS---YSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGAGISA 384

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 385 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 431


>gi|238762162|ref|ZP_04623134.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
 gi|238699509|gb|EEP92254.1| Transcriptional regulator, LysR family [Yersinia kristensenii ATCC
           33638]
          Length = 285

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 115/284 (40%), Gaps = 5/284 (1%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V R GSF  AAE+L +S ++ S  I+GLE+ +  +LF R  R + LTE G         
Sbjct: 2   AVVRRGSFRAAAEELGISTTAASSAIAGLESRLQARLFNRTTRSVALTEAGKNFVERIGP 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
              ++     E+  SS +P+G LRI    + G    +  +  +L  YP +++++    + 
Sbjct: 62  ALMEIRRATEEVNSSSAEPTGILRINAPPESGPLFFERIVIPYLQCYPQMRVEIAEQARL 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           IDI  +  D  IRL + +    +       +   A A+P YL     P + + L +H  I
Sbjct: 122 IDIVAEGFDAGIRLAESVPQDMISVPLTSDLRQIAVASPDYLAKYGTPQTPEALKQHQGI 181

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252
                          L           I  L + S  + ++    G GIA + +  +KD+
Sbjct: 182 CMRFSNGSIYRWE--LERRGEYYEVDIIPRLVLPSMQARLEAVRAGLGIAFINESQIKDD 239

Query: 253 PN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                L+ I+ D       +   YP        LKA    I  +
Sbjct: 240 LASGCLIPILADWCQAFKGLCLYYPGHRYVPAGLKALVATIRAR 283


>gi|226198795|ref|ZP_03794359.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|254195223|ref|ZP_04901651.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|169651970|gb|EDS84663.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|225929235|gb|EEH25258.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 448

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 144 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 203

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 204 NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 263

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 264 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAVPRHP 322

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 323 DDLPGSHWIGHGGLANLS---YSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGAGISA 379

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 380 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 426


>gi|127511440|ref|YP_001092637.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126636735|gb|ABO22378.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 305

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 125/296 (42%), Gaps = 6/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L++   +A   S + AA +L ++ +S S  +  LE ++  +LF R  R + LTE+G 
Sbjct: 4   LKDLQLAIRIADLHSISAAARELGMTPASASAALQRLEHKLNCQLFARSTRNMQLTEEGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +    L+     L +   +  G+LRIA   DLG+N ++  L E     P++ +
Sbjct: 64  AFIDTGRQALSLLQGASDALADKRGELRGELRIALPSDLGRNRVRAWLDELTAEAPELTL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++  D+       A+R  + +Q SSL++R+L  +H    A+P YL     P   Q
Sbjct: 124 RLYFGDQLDDLIAQNVHLALRYGE-LQDSSLMRRQLARMHRVTVASPVYLARHGRPSHPQ 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H ++          +     A   +P+          N    I ++ + G GIA  
Sbjct: 183 QLSQHKILLLNRGNTPWHKWR--FAYKQQPLEVELTGSKSCNDGAVIKEWALAGEGIAYK 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             + V        L  ++ D +     +   Y +    + K++    F+  K + +
Sbjct: 241 SWFDVAQEVTEGRLELLLVDYLADPIPLQLTYLQTEYPSHKVRTCIEFLKEKCQAF 296


>gi|262278283|ref|ZP_06056068.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258634|gb|EEY77367.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 309

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 130/294 (44%), Gaps = 11/294 (3%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLENEMDVILLHRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  +I + E      G LRIATT DL    L   L  ++  +  
Sbjct: 62  AGQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHLIPALSHWMSAHRG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPI--QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           + +   + ++ ID+  +  D A+R+      +SSS+I   +  +     A+P YL     
Sbjct: 122 LSVHFEVGHRYIDLIEERIDIAVRMSSTPVEESSSII--PMAFVDQILVASPSYLNQSSP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +   +L  H L++   +      +F  + T    +     S LQ N+       C  G 
Sbjct: 180 IVHPNDLRDHELLSINVMNDSRHFNFQHVKT-GETLNIEMQSRLQSNNLQVAKALCQQGH 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA +     +    N +L+ +M D   P+FT+Y    +  +   K++     +
Sbjct: 239 GIARILYLDAQKELKNGSLIELMPDWKLPAFTLYAEVAKHDQQPMKIQRCVEAL 292


>gi|159045020|ref|YP_001533814.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912780|gb|ABV94213.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 322

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 120/289 (41%), Gaps = 6/289 (2%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  V  +GS   AA  L    S ISR+++ LE  +  KL  R       T QG   +  
Sbjct: 29  AFLKVVETGSVRAAARALGQDPSGISRRVAQLEARLNAKLVRRSGNATRPTAQGRAYYAR 88

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
              +  +LE  + E+   +  PSG LR+   ID GQ  L   L EF   +P ++  L+L 
Sbjct: 89  LRAIIDQLEALEAEIGGETDTPSGLLRVTAAIDFGQEFLAPWLLEFRARHPAVEFDLVLA 148

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKH 189
           +  +D+  +  D AIR  K +  SSLI  KL  +     A+  Y++    P +  +L  H
Sbjct: 149 SGFVDMGANEIDVAIRAGK-LPDSSLIATKLAELPRVLVASRAYVEAHGAPRTPSDLLAH 207

Query: 190 NLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
             I F              +   + +   R + + +N+  S +     G+GI   P +  
Sbjct: 208 PAIFFVPGNRNA--PLKLRSPEGQVVEVRRSNGIAINAVRSAVAAVRAGAGIHSGPRWAF 265

Query: 250 KD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D      +V I+ D    +F +Y     A+    ++  F  F+  K R
Sbjct: 266 SDLIAAGEVVEILPDYTQDAFPLYAVRQPAIVVPARISRFIPFLREKVR 314


>gi|229526142|ref|ZP_04415546.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229336300|gb|EEO01318.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
          Length = 289

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 138/296 (46%), Gaps = 15/296 (5%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ +   ++ +F  V  +GS + AA++L++S+S +S+ +  LE E+G+ L  R  R  TL
Sbjct: 1   MAMNRLRQMAIFAHVVEAGSVSAAADKLNVSKSVVSQHLKTLENELGMVLMKRTTRRQTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G + +    E+    E+      +   +P G+ RI  +  L  +L+   + E +  Y
Sbjct: 61  TDVGEQFYLKCKELNSIAESAWDIASDYQTEPQGRFRITASHALMDSLVAPVIAELMTQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P ++ +LI D++ +D+  +  D AIR+  P   SSL Q+++             L+  R 
Sbjct: 121 PKLKPELIADDQHLDLMANDIDMAIRIG-PSHDSSLKQKRIGEFRDVLCG----LEERRT 175

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                 L++   I      PK +E     A     I   + SC   NS+ + +     G+
Sbjct: 176 K-----LNESPYIA-NVWQPKQIEHHFRSAEGQTWIYRQQASC-TANSFHTCLALIRSGA 228

Query: 240 GIALLPDYIVKDNP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+ ++PD+ + +    LV ++ +   P  TVY   P +      +K   +++  +A
Sbjct: 229 GVGIVPDFYLSERGSQLVNVVPNYTLPINTVYTLTPYSSHTPTIVKLCTDYL-EQA 283


>gi|229589237|ref|YP_002871356.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361103|emb|CAY47966.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 316

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    +  T  G  
Sbjct: 8   DQLGLFLDVLETGSFSAAARRHPLTPSAVARRIDSLESSVGSRLFQRSTHAVVPTPAGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L+  + E    S  P G +R+      G+  L   + +FL +YP + + 
Sbjct: 68  FAERARRIVSELQLARAEAVSLSHAPEGLIRVDAPAAFGRRHLAPVIADFLNVYPGLDVH 127

Query: 126 LILDNKDIDIS---MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+    +   D  +R    I  + LI   L +I   A A+P YLKN   PL 
Sbjct: 128 LHLIDSFVDMQGAHLGKVDLVLRAGH-IVDTRLIATPLASIVRIACASPAYLKNRGTPLH 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +EL +H+ + +  L P  M  + +     R    P+   +  N+  +++   + G GIA
Sbjct: 187 PRELGEHDGLDWDGLAP--MFAWRFELDGRRATYRPQRIRMSANNAEALLSGALAGLGIA 244

Query: 243 LLPDYIVKD---NPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP ++  +      L+ +  +       +  +Y    E  +   + +    ++  +
Sbjct: 245 HLPTWLASEYLVRGELLPLFCENGLPSPETTGIYALRLE-QQPNARSRLLLEYLKTR 300


>gi|304394847|ref|ZP_07376733.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
 gi|303293038|gb|EFL87452.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
          Length = 302

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 123/291 (42%), Gaps = 6/291 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++  F  V  +GS   AA  L+++ S+I+R+I  LE  +G++L YR  +G TLT  G 
Sbjct: 4   LAEIETFIAVVAAGSQLAAARHLNIAVSAINRRIHDLEERLGVELTYRTQQGTTLTHYGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V   L      +     + SG +RIA    LG   +   + +F +  P++  
Sbjct: 64  TYYDRCLRVVADLNEADAMIAGEMQQSSGLIRIAVPHALGAEQIAPIMNKFAVANPEVHF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ + ++ ID+  +  D AIR+    +   L +  L  +     A+P + +    P S  
Sbjct: 124 EINVSDRQIDLVDEQYDLAIRI-DGTEKPELEEEVLYKVRYRLCASPTFWQTHGLPKSPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     + +     K  + +++  +  +    P  +    N+   I++    G G+AL 
Sbjct: 183 DLIGLPALAY--QTGKGTKLWSFRNSGGKLFKVPLTTRYVANNGGYIIEAAKAGLGMALE 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P+++     D   LV  +++  + +             + +++ F   +  
Sbjct: 241 PEFVCGEALDTGALVPALDNYQSYTRFAKIVRANNRPPSLRVQRFVEVLRA 291


>gi|78066337|ref|YP_369106.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967082|gb|ABB08462.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 308

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 6/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D ++VF      GS   A  +L  S +++SR I+ LE   G  L YR  R + L+E
Sbjct: 1   MDRIDAMKVFVATLDEGSLAGAGRKLGRSPAAVSRAIAFLEEHTGTALLYRTTRTIRLSE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +   LE   + + +    P G L +   +  G+++L+  L EF+  +P 
Sbjct: 61  AGERYAAACRRILSDLEEADMLVADERSAPRGLLTVTAPVAAGEDVLRALLDEFIERHPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I+L L ++ + +  +  D A+R+   +  S+L+   +  +     A+P YL       
Sbjct: 121 VSIRLQLLDRPVSLIDEGMDVALRIAH-LTDSTLVAIPVGAVRRVVVASPDYLAKHPAIE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H +I+           F   A    P          +N+    +   V G G+
Sbjct: 180 TPADLAQHRIISMTHFGLDSWS-FPPSAPSALPQVVQFAPRFIINTIRGAVASAVAGHGV 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             L  Y V +   +  L  ++ D       ++   P    +  K++AF +F   + R+
Sbjct: 239 TRLFSYHVAEPVRSGALRIVLRDSEHAPLPIHLVTPYGRLSVPKVRAFVDFAAPRLRE 296


>gi|39936450|ref|NP_948726.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39650305|emb|CAE28828.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           CGA009]
          Length = 338

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + +DW+ +  F  VAR  S   AA +L +  +++SR++  LE  +   LF R   G TLT
Sbjct: 31  IRYDWNDVVYFLEVARQRSLVRAAAKLKVDHTTVSRRVRELERSLNSTLFKRSKSGFTLT 90

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L +    +  +  +    +   +    G +RIA    +G   L   + +F  +YP
Sbjct: 91  EIGMRLLQYAEGMESQANSIVEAIGTDTADAGGAVRIAAMEGIGSFYLTRCIADFNRIYP 150

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQI+LI D + +D+S   AD  +   +P     L  +K+    +  YA   Y      P
Sbjct: 151 SIQIELITDTRLLDLSRREADIFVSFFRP-HGKRLSIKKVGEFRISLYATDAYFGGRSPP 209

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL+ H  I F +      E+  WL+ V R    P  +  +  S ++       G G
Sbjct: 210 TTVKELETHAFIDFIEDYIYSKEN-RWLSDVLR----PPHTIFRSTSLVAQSIAVSAGQG 264

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA+LP Y+   N  L  +M ++ T +  ++    E L +  ++KA   F+
Sbjct: 265 IAMLPSYVASGNAELFPVMPELFT-TRDIWLSVHEDLLHVARIKAVTTFL 313


>gi|241204698|ref|YP_002975794.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858588|gb|ACS56255.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 302

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 12/298 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R+   V  +GS +  + +L+    S+SR+++ LE  +G  L  R +R L LT+
Sbjct: 1   MDRLEAMRILLAVVDAGSISAGSRKLNAPLPSVSRKVAELERHLGANLIVRTSRNLQLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++   LE  +         P G L I   I+ G   +      F+  YP+
Sbjct: 61  AGRDYVDAARKIMADLEEAERRASGEYQTPRGVLTITMPIEYGSRYVLPVALSFMDKYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+  ++ +D+  +  D AIRL + +  S+L   K+    +   A+P YL+    P 
Sbjct: 121 VSLNLLSLDRTVDLVSEQVDIAIRLGE-LADSALHAVKIGEFRLLTCASPAYLQRHGTPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L   + I F          F W   VD  P+     + L+VN+  + +   V G+G
Sbjct: 180 RPGDLIDRDGIIFNKRT------FFWTFDVDGTPMEAVPRNRLEVNTAANCVAAAVGGAG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA L DY V D   +  LV I+ D   P   ++  Y        K++AF ++   + R
Sbjct: 234 IARLFDYQVPDELASGTLVPILSDFDGPPKPIHIAYARQGLLALKVRAFVDWALPRLR 291


>gi|172063631|ref|YP_001811282.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996148|gb|ACB67066.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 299

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 131/293 (44%), Gaps = 14/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F  AA++L ++Q ++++Q+  LE  V ++LF R  RGL LT +G 
Sbjct: 13  LNALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDVVAVQLFRRLPRGLALTREGL 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           +      L +        L ++TT       L   L +F  L+PDI++
Sbjct: 73  EYFSSVQRALQIISDATDALGQRPT----VLAVSTTPSFASKWLIPRLTDFGRLHPDIEV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D +      D  D AIRL KP   + L    L  + + A A+P  L +     +  
Sbjct: 129 RVIADERLASFRADGVDIAIRLSKPPFPAGLAAELLAPLDIFAVASPKLLDSGPPIRTPA 188

Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H L+    DL P+ +E        D P   PR      +  L  +   V G GIAL
Sbjct: 189 DLSMHALLHDAHDLWPEFLEKLGGTGQAD-PTKGPR-----FSQSLLAIDAAVAGQGIAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + +V+ +     L R+ +     S   Y  +P+A  ++  L+A R ++F +
Sbjct: 243 TGEPLVERDIAEGRLRRVFDFSFPMSLGFYVVFPQANAHSEALQAMRRWLFAQ 295


>gi|21233154|ref|NP_639071.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770094|ref|YP_244856.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115001|gb|AAM42983.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575426|gb|AAY50836.1| transcriptional regulator lysR family [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 308

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 130/299 (43%), Gaps = 8/299 (2%)

Query: 1   MSFD--WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           MS D  W+  R F  V  +GS + AA QL ++Q ++  +I+ LE  +G  LF R   GL 
Sbjct: 1   MSHDIAWEDQRTFLAVLDTGSLSAAARQLGVTQPTVRARIASLEAALGTTLFTRAITGLI 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            T +   L      +                  +G +RI+ +  +G  +L   L     +
Sbjct: 61  PTSEARGLEAAARTMARASAMFVRLASAPPGLVAGTVRISVSDFVGVEVLPAMLARLRQV 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P I  +L+L N   D+     D A+R++ P Q  +L+ RK+  I +  +A   Y+    
Sbjct: 121 HPHIVTELVLSNTPADLLEQEVDIAVRMQPPTQ-GALVARKVGAIALGLFAHRDYIARRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P +++ L +H LI      P        LA    P         + +S+ + +     G
Sbjct: 180 APATVEALLEHELIG-----PARNRADLSLARALHPHLLRDRLATRTDSHPAQLALARAG 234

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
            GIA+    I + +P LV+++ +V  P+ T +    E L++  +++A  N +      +
Sbjct: 235 LGIAIAQCPIAQADPCLVQVLPEVALPALTTWIVTHEDLRDVPRIRATFNHLVTAFERY 293


>gi|330005616|ref|ZP_08305294.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328536182|gb|EGF62563.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 308

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 121/289 (41%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F  V R  SFT AA +L ++ S++S  +  LET +G++L  R +R +  T+ G
Sbjct: 13  DLADLNAFRTVERLRSFTQAAVELGITTSALSHSVRNLETRLGVRLLNRTSRTVAPTDAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           S L R     ++++     E+     +P G+LRI    D  + +L   L +FL  YPD++
Sbjct: 73  SNLARRLEIGFNEIGEALDEINLLRDRPVGRLRINVLADGARLILSKLLPKFLQTYPDVE 132

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLS 182
           +++ +D+K +DI     D  IR    +     +  KL       A A+P YL   + P+ 
Sbjct: 133 VEVAVDDKMVDIVSAGFDAGIRFGGTVP-EDFVAVKLGPELRWVAVASPRYLYRKQAPVI 191

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  HN I                    R I  P   C  VN     ++  +   GI 
Sbjct: 192 PEDLKSHNCIQIRTGQGVIYRWDFHKGDEHRSIEVPGQVC--VNETTLGVELALKDVGIT 249

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
              +  V ++     L  ++ D       ++  YP   +    LK    
Sbjct: 250 YCLEERVAEHIKTGELHIVLPDWSPIEPAMHLYYPGHRQVPQGLKELIE 298


>gi|161521681|ref|YP_001585108.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352153|ref|YP_001947780.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia multivorans ATCC 17616]
 gi|160345731|gb|ABX18816.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336175|dbj|BAG45244.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia multivorans ATCC 17616]
          Length = 297

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 120/293 (40%), Gaps = 15/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+
Sbjct: 11  LNALRAFEVAARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGA 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     H +      L +        L I+TT       L   L +F   +PDI +
Sbjct: 71  AYFSDVQRALHAIADATDRLVKRRA----TLTISTTPSFASKWLIPRLAQFTDAHPDIDV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D +      D  D AIR  KP          L  + + A  +P  L     P S +
Sbjct: 127 RVIADQQLATFRHDGVDLAIRYGKPPFGKHFAAHALFPLDVCAVCSPALLAA---PASPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H L+     +        ++A +  P+       L+ N     +   V G GIAL 
Sbjct: 184 ALAGHVLLHDAHDLWPA-----FIAALPEPVDVDPHKGLRFNQTSLAIDAAVAGQGIALA 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D +V+ +     L +  +     S   Y  YP   ++   +   R+++   A
Sbjct: 239 TDPLVERDIAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDAIAVMRDWMIGAA 291


>gi|207742660|ref|YP_002259052.1| transcriptional regulator protein [Ralstonia solanacearum IPO1609]
 gi|206594054|emb|CAQ60981.1| transcriptional regulator protein [Ralstonia solanacearum IPO1609]
          Length = 294

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 7/286 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  VAR+ +   AA++L + Q+++ R+I+ LE E+  KLF R +  L LT  
Sbjct: 1   MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLALTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      + H   T +  +  +  + +G +R+ATT  L    +   + +  L +P I
Sbjct: 61  GEALIGPAEAMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +      +++   AD A+R  +P  +  LI R++ TI    YA+  YL+   EP+ 
Sbjct: 121 DIVCLASKSIANLTKREADVAVRTLRP-TAPDLIARRVATIETGLYASRGYLRARGEPVE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+ +    P+    + W A    P+   R+  LQ +S ++I +  + G GI+
Sbjct: 180 GSAFAGHDLVLY----PRNEVPWMWEALCGEPVAPSRV-VLQSSSAMTIFEAVIAGIGIS 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            L       +  LVR++         V+      L  T +++A  N
Sbjct: 235 ELVCCRADPHSELVRVLP-HRRRMQDVWLVTHADLHKTARVRALMN 279


>gi|299769244|ref|YP_003731270.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
 gi|298699332|gb|ADI89897.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
          Length = 309

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 130/294 (44%), Gaps = 11/294 (3%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLEHEMDVTLLHRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  +I + E      G LRIATT DL    L   L  ++  +  
Sbjct: 62  AGQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHLIPALSHWMSAHRG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPI--QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           + +   + ++ ID+  +  D A+R+      +SSS+I   +  +     A+P YL     
Sbjct: 122 LSVHFEVGHRYIDLIEERIDIAVRMSSTPVEESSSII--PMAFVDQILIASPSYLNQSSP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +   +L  H L++   +      +F  + T    +     S LQ N+       C  G 
Sbjct: 180 IVHPNDLRDHELLSINVMNDSRHFNFQHVKT-GETLNIEMQSRLQSNNLQVAKALCQQGH 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA +     +    N +L+ +M D   P+FT+Y    +  +   K++     +
Sbjct: 239 GIARILYLDAQKELKNGSLIELMPDWKLPTFTLYAEVAKHDQQPMKIQRCVEAL 292


>gi|89055101|ref|YP_510552.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864650|gb|ABD55527.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 292

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/282 (23%), Positives = 122/282 (43%), Gaps = 8/282 (2%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79
            + A   L +S +  S +IS LE  + ++LF R  R LT TE G   +    E+   +E 
Sbjct: 1   MSAAGRDLRISPAVTSSRISQLEEHLSVRLFQRTTRSLTPTEHGKAFYSGAKEILESVEN 60

Query: 80  TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139
            + ++ + +  P G L +A  + +G+ L+   +  FL LYP+++++L L ++ +D++ + 
Sbjct: 61  AEAQVIDITENPKGSLYVAAPLGVGRRLIAPEVPGFLDLYPEVRVRLRLTDRKVDLTTEG 120

Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD--KHNLITFGDL 197
            D A  L +P + S+L  RK+  +     AAP Y+     P    EL    H  +     
Sbjct: 121 LDLAFFLGEP-EDSTLRIRKIADVERVLCAAPDYVAARGMPAGGAELTSGAHECLNL--R 177

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PN 254
            P   E    L T D P         + +    +  + + G GI + P + V ++     
Sbjct: 178 FPGATEFQWHLKTPDGPKRFRIQGRYESDDGDVLNDWALAGQGIVMKPIFEVAEHLKAGR 237

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LV + ++       +   +        K + F  F+  +  D
Sbjct: 238 LVAVAQETPPMPIQMACLFTHRRMQDPKTRLFMEFVINRIGD 279


>gi|332978798|gb|EGK15485.1| LysR family transcriptional regulator [Psychrobacter sp.
           1501(2011)]
          Length = 320

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T
Sbjct: 22  MQNKLEMMRIFCVAAESRNFKEAATQLGISPQVVTRAIKELEEQRGEILFYRSTRQIKIT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G +L +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   Y
Sbjct: 82  ADGERLAKQARFAVGSIDALLVKDTKEKRDEMRGTVRLTVSSVLGRKLVVPALAEFATRY 141

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI +  +L +   D+  +  D  IR    +  +  + R+L  ++ ++   P  +     
Sbjct: 142 PDIVVDCVLTDLHSDVIDERIDIGIRFGF-LPDNRYVARELAKVNFYSVGTPELIDKVGM 200

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  I +LDK+ L    D   K    + W  T  R    P       +   +  Q  + G 
Sbjct: 201 PKKIIDLDKYPLTALFD--HKTGRYWPWTFTESRSF-TPSKPRFITDDLEAEFQAILAGV 257

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G   +P ++V     +  L++I+ +  +P + +Y   P+      +++A  +++  
Sbjct: 258 GFGHMPGFLVLPWLRSGKLIQILHEETSPVWRLYLYRPQRGPIPLRIRALFDYLAE 313


>gi|73539393|ref|YP_299760.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72122730|gb|AAZ64916.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 326

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 118/294 (40%), Gaps = 12/294 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+    F  V   G+FT AAEQL   +S +S  ++ LET +G KL  R  R + LT+
Sbjct: 20  TIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTD 79

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            GS ++R  + ++ +L   + E         G LRIAT  + G   L G +   L  +P 
Sbjct: 80  AGSAVYRDVAPLFARLREIRQETLAREEGVQGVLRIATPYEFGAQQLGGIICRTLAAHPA 139

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + + + +    +D   D  D A  +    +  S  + R++  +    + AP    +    
Sbjct: 140 LDVSVEITQGLVDPIRDGFDVAFVIVDADLPDSGTVARRIYHVERGLFVAPALAASLPPL 199

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGS 239
              ++L     +T          D  W    D   I  P    +Q  +    +Q  + G 
Sbjct: 200 ARPEDLVNMPTLTTPG-------DTVWEFQRDGESITVPIRPRMQTYNAELRLQGALAGL 252

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L     +       LVR++ D   P    +   P+      K++AF   I
Sbjct: 253 GIAKLSVNYCEAEIAQGRLVRVLPDYPLPPLRAFALLPDRRLQPRKVRAFMEAI 306


>gi|264678687|ref|YP_003278594.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262209200|gb|ACY33298.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 314

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 127/299 (42%), Gaps = 12/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M++    LR F  V +  S   AA+ LH++  ++S+QI  LE  +G+ L  R   G+ LT
Sbjct: 21  MNYPLQALRTFVEVGQRKSVKAAAQALHVTPGAVSQQIRVLEDRLGVVLLERERLGMRLT 80

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+ +H    E + +++     L+ S  +    L ++T      + L   L  F  L+P
Sbjct: 81  EAGASVHPRLREAFLQIDQAMHALERSKGRR--SLTVSTVATFAASWLVPRLGRFKQLHP 138

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+I++   ++ +D+  D  D A+R         L    L+   +   A+P +LK CR  
Sbjct: 139 DIEIRVEATSELVDLQRDRVDIALRHGLG-DYPGLEVTCLMAPVLTPVASPEFLKTCRGA 197

Query: 181 L--SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +     +   + L+  GD     +    WL                      +++    G
Sbjct: 198 VINEAGDCLDYPLLHDGDRADWPL----WLKAHGVADDARAQRGSAFEDDFLLIRAAEAG 253

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL+P    ++      LV++++      F  Y        +  +++AF ++I  +A
Sbjct: 254 QGLALVPQAYAQEEIATGRLVQVLDKPWPARFAYYAVTRPGAADRSEVRAFLDWIRAEA 312


>gi|312883118|ref|ZP_07742849.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369278|gb|EFP96799.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 293

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 136/297 (45%), Gaps = 13/297 (4%)

Query: 3   FDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +++ + S+IS++I  LE ++G++L  R  R +  TE
Sbjct: 1   MDWILSVKSYVNVVDEGSFNGAARRMNTTSSAISKRIHWLEEKIGVQLLKRTTRSVIQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  ++         ++   E +  S  P+G L+I TT+ +G   L   L +FL  YPD
Sbjct: 61  EGALFYQRARAQLDDWQSIIDETRSVSQTPAGVLKIGTTLTIGSKFLVQYLNDFLQAYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+I L+      ++     D  I R  + + S S     L    +  YA+P Y+K   EP
Sbjct: 121 IRIHLVTT-PPGELPSLTLDLFISREIEQLNSLSFKATPLFKQKVGFYASPEYVKLHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S +EL  H L+ +G+ I + +   +    +               +  ++      G G
Sbjct: 180 KSHEELSAHKLLIWGETIQREISLISGEKILLN-------GNFVTTNPEALFHAAKSGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + L  D ++ ++     L+RI+ D+     TVY  YP+      + K F +++  + 
Sbjct: 233 LLLSNDAMIIEDIKAGKLIRILPDITVDESTVYAYYPKLDYQHTRTKLFLDYLQTRL 289


>gi|157373798|ref|YP_001472398.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157316172|gb|ABV35270.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 301

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 128/297 (43%), Gaps = 16/297 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L+ F  VA  GSFT AA+ L +S+  +SR +  LE  +  KLF+R  R + LTE 
Sbjct: 1   MNLSYLQTFLAVAEEGSFTKAADVLDVSKGLVSRHVCNLEKALNSKLFHRTTRRIALTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L     ++       +I +++ + + SG L+++   + G+ L    +  FL  +P I
Sbjct: 61  GEELFTKAKQIQLLASEAEIRVKDITQEFSGDLKVSAPYEFGRALCDHVIPSFLRQHPQI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L       +I+    D A R  + + +  ++ ++L  I      +  +     E  S
Sbjct: 121 NLILDFGPIKREIASGDCDVAFRAYEELPND-VVGKELGFIRNVLVCSKDF-ALHNEIKS 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           I++L     I  G       E +N L  V  D+         L+ N+Y SI      G G
Sbjct: 179 IKDLHHCAFILNGQN-----ERWNQLELVNGDKEYKIEVGGTLRSNTYSSIFSLAKQGLG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF----RNFI 290
           IA LP Y V+    +  L+ ++ D    +  +   Y +      KL  F    + ++
Sbjct: 234 IASLPYYQVEGSLKSGELIHLLPDWAIKTHKLSLLYAQRRITPRKLVTFNLAVKEWL 290


>gi|152988335|ref|YP_001345945.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963493|gb|ABR85518.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 302

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 124/296 (41%), Gaps = 13/296 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   AR  SFT AAE+L L+QS+I RQI+ LE  +G++LF R  RG+ LTE G   
Sbjct: 10  ALVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGVKLTEAGLSY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +     +E   + +        G + +A     G   L   LK F  L+P++ + L
Sbjct: 70  SRRVAVRLDAVERDTLAVMGHQG--GGAIELAVVPTFGTQWLLPRLKRFQRLHPEVTVNL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +    +    D A+        S  +   L+  +     +P  L   R  LS +++
Sbjct: 128 TNRTRPFLFADTEFDAALYFGDA-DWSGTVSHFLMRENPVPVCSPELLGGRRT-LSAEQI 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
               L+          + F+     V   +  PR           + Q  + G G+AL+P
Sbjct: 186 AGLPLMQQSTRPYGWRQWFHSQGLNVAHDMSGPRYELFS-----MLAQAAMHGMGVALVP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +++++   +  L+  M+         Y   PE    +  L AFR+++  +AR ++
Sbjct: 241 PFLIQEELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEARQYR 296


>gi|330828215|ref|YP_004391167.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328803351|gb|AEB48550.1| LysR-family transcriptional regulator [Aeromonas veronii B565]
          Length = 302

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 120/292 (41%), Gaps = 6/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L++F  V  + SF  A++ L +  S++SR IS LE  + ++L  R  R + LT+ 
Sbjct: 5   MELNALKIFIAVVENSSFVGASKTLQIPTSNVSRSISQLEEALNLQLIERSTRHMKLTQS 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   LE T+ EL    ++  G LRI    + G  LL   + +F   +P+I
Sbjct: 65  GQLLYTRVKPLLESLEQTEAELTSQQIQLKGPLRICIPNEAGPKLLGTAIADFACQHPEI 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            I  I +   ++   +  D AI + +  +     I   L TI      +P  ++    P 
Sbjct: 125 TISCITNLSGLESLREDLDMAIIIHRGKMDDCDYIASHLTTIPCTVVGSPSLIQKWGLPN 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L     IT    +      F   ++    I        +VNS    ++  + G G 
Sbjct: 185 HTSQLKTLPCITTVSALKGMPWQFTRTSSEFSTIQV--NEHYRVNSGELALKAAIAGVGF 242

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+L     +   DN +LV I  ++      ++  Y        K + F  FI
Sbjct: 243 AILAKVSCQEFIDNGSLVEIELELPAAPLQLFAVYANRQYLPAKTRVFIEFI 294


>gi|319778072|ref|YP_004134502.1| lysr substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171791|gb|ADV15328.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 301

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 14/296 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + L+ F   AR GSFT AA++L ++Q ++S Q+  LE E+G++LF R  + L++T  G
Sbjct: 7   SLNALKAFEAAARHGSFTRAADELSVTQGAVSHQVKALELELGVRLFDRERQKLSITRAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                V  + + ++       +   +  +G L ++T+ D     L   L  F   +PDI 
Sbjct: 67  LSYLEVVRDAFDRI--ALGTQRIQHLSRAGALTVSTSPDFASKWLVNRLGRFAETHPDID 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++      +D + +  D A+R      +   + R L +  + A  +P   +  REP   
Sbjct: 125 LRVSATMHHVDFAREDVDLAVRHGDGNWAGHDVVR-LCSEQLFAVCSPKLHQRMREP--- 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ++ K  L+   D      +   WL              + +N    ++   V G G+AL
Sbjct: 181 SDVLKFPLLHLDDRK----DWSEWLEAAGVRDARLSHGPV-LNRASMVIDAAVDGQGVAL 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               +   +     LVR     +  S T +   P+A     K+  FR ++  +A D
Sbjct: 236 ARTTLAAWDLINGRLVRPFATALRLSKTYWIVCPQATSMVPKIVTFREWLLAEAAD 291


>gi|222149434|ref|YP_002550391.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221736417|gb|ACM37380.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 305

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 125/292 (42%), Gaps = 14/292 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  VAR   FT AAE+L ++Q+++S QI  LE  +G  LF R +R ++LTE G +
Sbjct: 10  NALRVFEAVARHNGFTRAAEELGMTQTAVSYQIKLLEDNLGTLLFLRTSRQISLTEAGER 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L   T E +  L       +  + +    L I +T     + L  +L  F L +P I ++
Sbjct: 70  LLPKTREGFELLREAVALARHEASE---VLEIHSTPTFASHWLARHLGSFQLQHPGIAVR 126

Query: 126 LILDN-KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L+  + K  D + D  D  I + K    + LI   ++ +      +P    +        
Sbjct: 127 LLRSDEKQRDFARDGGDVGIHIGKE-PVAGLICHPILKLDYAPMLSPALADSIGGIREPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIAL 243
           +L K   ++  +         +W  +       P    L    +        + G G+A+
Sbjct: 186 DLLKLPRVSSCED-----WWADWFHSAGIASPLPASIGLDAQGALDLQAGAAMAGHGVAI 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           L  + V++   +  L++  E ++      +  YP + +   K+KAF  ++  
Sbjct: 241 LSPFYVEEELASGRLIQPFELLLGDEQIYWLVYPPSRRTMPKVKAFHQWLIA 292


>gi|170735859|ref|YP_001777119.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818047|gb|ACA92629.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 319

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLT 60
           + +WD LR F  VAR+   + AA++L +  ++++R+I  LE  +G  LF +   G  TLT
Sbjct: 11  NLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALEAAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   ++  +    SG +RI +T   G   L   L  F   +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQVANTGEALSGHVRIGSTEGFGCFFLAPQLARFRAAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +    +  KL    +  YA   YL N    
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERP-ERGPYVVTKLCDYQLRLYATRDYLANHAPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  I++ D +    E    L  +DR +     + L+  S ++ +   + G G
Sbjct: 190 TCTDDLARHAFISYVDDLAFSNE----LLYLDRAVPGA-TAGLRTTSVIAQVFAALQGGG 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+LP ++    P L  ++ + +  +   +    E L+   ++ A  +++   A
Sbjct: 245 LAILPCFMAATQPALAPVLPNDVVVTRCFWLTCREDLRKLRRVTALWDYLRAAA 298


>gi|126738862|ref|ZP_01754558.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126720043|gb|EBA16750.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 297

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 124/289 (42%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ +R F   A +GS + AA +L L+Q ++SRQ++ LE ++G+ LF R  + L+LT+ G
Sbjct: 5   DWNHIRAFLKTAETGSLSAAARKLGLTQPTLSRQVAALEADLGLLLFERLGKSLSLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L   + +V   ++  Q+     +    G +RI  +      +L   L E  L  P + 
Sbjct: 65  RELLAHSQKVGKAVDGLQLAASGQTQSIEGTIRITASDVTTAFVLPPVLHELRLRAPRLT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+  N   D+    AD AIR  +P +   LI R +       YAA  YL+    P S+
Sbjct: 125 IDLVAANDIRDLMRREADIAIRHVRP-EQPELITRLVQEPTARFYAATSYLERRGRPRSL 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +   H+ ++F               T            +  NS L+  +    G GI  
Sbjct: 184 ADFSNHDFVSFSTAERSIE-----FFTPLGIHLTAENFKIGSNSGLAAWELVKQGFGICP 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + D +      +  ++ ++    F V+      L  + +++   + +  
Sbjct: 239 MADDVAAAATGIEPLLPEMDPIVFPVWLTTHRELHTSRRIRLVFDLLAE 287


>gi|300703398|ref|YP_003745000.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299071061|emb|CBJ42370.1| Transcriptional regulator, LysR family [Ralstonia solanacearum
           CFBP2957]
          Length = 294

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 134/286 (46%), Gaps = 7/286 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  VAR+ +   AA++L + Q+++ R+I+ LE E+  KLF R +  L LT  
Sbjct: 1   MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLALTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      + H   T +  +  +  + +G +R+ATT  L    +   + +    +P I
Sbjct: 61  GEALIGPAETMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRRRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +      +++   AD A+R  +P  +  LI R++ TI    YA+  YL+   EP+ 
Sbjct: 121 DIVCLASKSIANLTKREADVAVRTLRP-TAPDLIARRVATIETGLYASRGYLRARGEPVE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+ +    P+    + W A    P+   R+  LQ +S ++I +  + G G++
Sbjct: 180 GSAFAGHDLVLY----PRNEVPWMWEALCGEPVAPSRV-VLQSSSAMTIFEAVIAGIGMS 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            L       +P LVR++         V+      L  T +++A  +
Sbjct: 235 ELVCCRADLHPELVRVLP-HRRRMQDVWLVTHADLHKTARVRALMD 279


>gi|126443540|ref|YP_001063714.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126223031|gb|ABN86536.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 322

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 14  WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    +              G +RI+ +  +G  +L   +      +P + +
Sbjct: 74  ALRAHAEAMESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHPALTV 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+  D+    AD A+R+ +P Q+  LI R +  I +  +A   YL  C  P    
Sbjct: 134 ELALTNRVQDLLRREADIAVRMTRPGQTQ-LIARHIGGIELGLHAHRDYLARCGTPRDAG 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H LI          +        DR         L+ +S L+ +     G+GI   
Sbjct: 193 ELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----ALRTDSDLAQLALIRCGAGIGAC 247

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + K +P LVR++         ++    E L+ + + +A  + +  
Sbjct: 248 QAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAE 295


>gi|190576388|ref|YP_001974233.1| putative LysR family regulatory protein [Stenotrophomonas
           maltophilia K279a]
 gi|190014310|emb|CAQ47957.1| putative LysR family regulatory protein [Stenotrophomonas
           maltophilia K279a]
          Length = 297

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 140/298 (46%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D ++ +R F  V  +GSFT AA  L +S++++++ +  LE  + ++L  R  R +++T 
Sbjct: 1   MDRFEAMRAFARVVETGSFTRAAHTLQISRTTVTQLVQQLEAHLRLRLLNRTTRRVSVTA 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +   + +  +LE  +  L +++ +  G+LR+       +  L   L +F   YP+
Sbjct: 61  DGAAYYPRIARLLAELEEVEGGLDDAATQLRGRLRVDVPGPYARLRLVPALPDFQARYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ + + ++++D+  D  DC IR   P    +L+ R L  + +  +A   Y++    P 
Sbjct: 121 IQLDIGVSDREVDVIADNVDCVIRGGTP-ADPALVARPLGALPIGFHAGTGYVQRFGLPT 179

Query: 182 SIQELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             + L+   H+++ F          F+     +R   + R   +  +   + +   + G 
Sbjct: 180 DPRALEGPDHHMVGFLSPRSGRARVFSAQRGDERVEVQGR-YTVGFDDGNAYLAAALAGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+  LP Y+ + +     L+ +++D   P   ++  +P     + +L+ F +++    
Sbjct: 239 GVVALPSYMAEPHVARGELLPVLQDWQLPPMPMHVMFPPNRHMSQRLRVFIDWVVEAL 296


>gi|238894774|ref|YP_002919508.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547090|dbj|BAH63441.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 301

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 61/278 (21%), Positives = 119/278 (42%), Gaps = 8/278 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +  +R+F  V   GS + AA  L + Q ++S +I  LE  +G +L  R+ R ++LT
Sbjct: 1   MDL-FSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+  +  +       E      +E+     GK+RIA     G++LL   L +    +P
Sbjct: 60  QSGNVFYERSKTAVQAAEHALSVNEENQG-LQGKIRIAAPYSAGESLLMPALLQLQNEHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q+ +I +++ ID   +  D ++RL   +     + R L T+     A+P  L     P
Sbjct: 119 ALQVDVIFNDRVIDPVTEGVDLSLRLGD-VSEGFFVARPLGTVRRVLLASPALLAKMGHP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +   L  +       +          +A+ D+ I  P     Q   + S++ + + G  
Sbjct: 178 DTPDALTDYPFAAVSGVF--ASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHA 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPE 275
           I +L   + +    +  L+ ++     P F+ +  +P 
Sbjct: 236 IGVLQSPVCRKEMADGALIPLLSHYPIPPFSAWLLHPP 273


>gi|328545632|ref|YP_004305741.1| Uncharacterized HTH-type transcriptional regulator [polymorphum
           gilvum SL003B-26A1]
 gi|326415372|gb|ADZ72435.1| Uncharacterized HTH-type transcriptional regulator [Polymorphum
           gilvum SL003B-26A1]
          Length = 320

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 134/291 (46%), Gaps = 12/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD LRVF  VAR+GS + AA  L ++ S++ R+I   E  +G++LF R   G  LT  G
Sbjct: 7   NWDDLRVFLAVARAGSLSGAARTLGVNHSTVFRRIGAFEEALGVRLFERQPGGYLLTPAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      V  ++ +   ++    ++ SG +R  T   L   LL  +L  F   YP I+
Sbjct: 67  EELRDGALRVEEEIASLSRKVTGQDLRLSGAVRFTTIDMLAFGLLPRHLAGFRDAYPGIE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++ N  +++S    D A+R+     + +L+ R++  +    YA+  Y     EP   
Sbjct: 127 VELVVGNVALNLSRREVDVALRVGNA-PAETLVGRRVGRLAFAVYASADYRARRPEP--- 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  HN I F       +          +P+       L+ NS  + +     G G+A 
Sbjct: 183 -DLSLHNWIGFDSEHEALVRRMAGFLPEVKPV-------LRTNSVAAALSAAKAGMGLAP 234

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP  +     +LVRI       +  ++    E L+ T +++AF +F+    
Sbjct: 235 LPCGLADLETDLVRIAPLPDEFTLDLWLLTHEDLRQTARIRAFLDFLAEAL 285


>gi|299066042|emb|CBJ37223.1| Transcriptional regulator, LysR family [Ralstonia solanacearum
           CMR15]
          Length = 294

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 136/291 (46%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  VAR+ +   AA++L + Q+++ R+I+ LE E+  KLF R +  L LT  
Sbjct: 1   MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLVLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      + H   T +  +  +  + +G +R+ATT  L    +   + +  L +P I
Sbjct: 61  GEALIGPAETMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I  +      +++   AD A+R  +P  +  LI R++ TI    YA+  Y++   EP+ 
Sbjct: 121 DIVCLAAKSIANLTKREADVAVRTLRP-TAPDLIARRVATIETGLYASHGYVRARGEPVE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+ +    P+    + W A    P+   R+  LQ +S ++I +  V G G++
Sbjct: 180 GTAFAGHDLVLY----PRSEVPWMWEALCGEPVTPSRV-VLQSSSVMTIFEAVVAGIGVS 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L       +P LVR++         V+      L  T +++A  + I   
Sbjct: 235 ELVCCRADAHPELVRVLPG-RRRMQDVWLVTHADLHKTARVRALMDCIVEA 284


>gi|239814001|ref|YP_002942911.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800578|gb|ACS17645.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 327

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 130/295 (44%), Gaps = 11/295 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VAR  +F  AAE++ L+QS++SRQI  LE EVG+ LF RH R + LT  G++L
Sbjct: 17  HLRAFEAVARHLNFRAAAEEMALTQSAVSRQIQSLEEEVGVALFLRHTRAVELTSAGAQL 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                +   +++T   ++++S+ +    + + T        L   L+ F    P+I I++
Sbjct: 77  LLAVQQSLPRIDTAVRQIRQSAGRK--SVSLTTFASFASMWLIPRLEAFQRDNPEIDIRI 134

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              +  +D+ +   D A+R   + +   +    +L    +   A+P  LK+     +  +
Sbjct: 135 DASDVAVDLEVADVDIALRYGTREVMPPN--AVRLFGETLTPVASPWLLKSSPPIKTPAD 192

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVLGSGIAL 243
           +    LI  GD     +E   W    +    E       L  N    ++Q  + G G+ L
Sbjct: 193 ITGFTLIEAGDAHRTHLEWLTWRRWFEVNGLERAQPRRWLYFNYAYQMVQAALTGQGVTL 252

Query: 244 LPDYIVKDN---PNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               ++ ++    +LV ++           +           ++KAF +++ ++A
Sbjct: 253 ARSSLIAESLANGDLVEVLPQHRMDSPMGYWLIAGPRNALRPEIKAFWDWLQVQA 307


>gi|209520338|ref|ZP_03269103.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499212|gb|EDZ99302.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 292

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA++L+++Q+++S+Q+  LE  +G  LF R  RGL +TE+G 
Sbjct: 7   LNALRAFESSARHLSFTRAAQELNVTQAAVSQQVRSLEERLGTALFKRLPRGLAITEEGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L  V S+ + ++E    +           L +          L   LK F   +P +++
Sbjct: 67  ALQPVLSDAFDRIEAVLKQFDGGHFHE--VLTVGVVGTFAVGWLMPRLKSFRDAHPFVEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+ +N  +D++ +  D AIR        SL   KL+   +    AP        P    
Sbjct: 125 RLLTNNNLVDLATEGLDFAIRFGDGTWPGSL-ATKLLDAPLALLCAPEIAARLARP---D 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  +  NW A     I    +     +S   +++  + G+G+AL 
Sbjct: 181 DLANETLL----RSYRMDDWMNWFAAAG--IAPRPVRGPVFDSSRLMVEAAIQGAGVALA 234

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  + +       LVR   DV   + + +    +    T  +  F  +I  +A
Sbjct: 235 PALMFEREIHTGRLVRPF-DVEVQAGSYWLTCLKGKPITPAMVLFSQWIAKEA 286


>gi|16119432|ref|NP_396138.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15161966|gb|AAK90579.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 299

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 110/286 (38%), Gaps = 7/286 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L     +AR GSF  AA  L +S +++S  I+ LE  +G++LF R  R ++LT+ G   
Sbjct: 8   DLDAVLSIARLGSFRAAALDLGMSTTALSNAIAKLEQRLGVRLFNRTTRSVSLTDAGKTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                     +    + +Q     P+G LRI       + +++  +  F+  YP + I L
Sbjct: 68  AERVGPAMMDIHDAMLSVQSLQETPAGTLRINAFATAAREVMEPLILSFMQRYPQVHIDL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + + + +DI     D  +R    + +  +     +       A+P +L+    P    +L
Sbjct: 128 VTEGRIVDIVAAGFDLGLRPADLVPADMIAVSLGLKRSNAVVASPDFLRIHGIPTVPADL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALLP 245
            +   I            F W    D    +  +   + ++    +      G G+  + 
Sbjct: 188 YRFRCI---RARLPNNALFRWKFEKDGDAMQIDVQGSITLDESSLVRIAAQNGVGLGYVM 244

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +  V+++     LVR++ED       +   YP          AF  
Sbjct: 245 EADVREDIAAGRLVRVLEDWTPALAPLALYYPGRKNPPAAFSAFIQ 290


>gi|33593135|ref|NP_880779.1| lysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33563510|emb|CAE42403.1| putative lysR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332382546|gb|AEE67393.1| lysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 301

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 124/294 (42%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ +F  VA + SF  A  +L LS S+++R ++ LE  +GI L  R  R + LT+ G 
Sbjct: 4   FQEVSLFLAVAEARSFAAAGRRLGLSASTVTRAVAALEARLGILLLVRTTRHVRLTDAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       V   L   +       V+P G+L +      G+  +   + ++L  +  +++
Sbjct: 64  QFAHDCRAVLDSLAQAEEAAAGGRVQPRGELSVTAPALFGELHVMPAIVDYLRQHRQVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++ + +  +  D A+R+ + +  SSL    +  +     AAP +L     P    
Sbjct: 124 RALLVDRVVRLLDEGVDVAVRIGR-LPDSSLTAIHVGDVRRIVCAAPDFLARAGVPSHPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L ++  +    ++ +   D                + L V S  + ++  V G G+A +
Sbjct: 183 MLPRYCTV---SVVMEGQMDRWRFVCDGHARDLDVQAQLTVTSSQAAVRAAVQGWGLAQV 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y          L  ++ +   P   V+  YPE  K   K+++F  F   + R
Sbjct: 240 VSYQAAGALREGALQVVLREFEPPPLPVHVVYPEGRKGAAKVRSFVEFCVERLR 293


>gi|126457796|ref|YP_001074277.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|126231564|gb|ABN94977.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
          Length = 448

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 7/287 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G
Sbjct: 144 NLNHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAG 203

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL+  +      L      ++    + +G LR+A         L      F+  +P I+
Sbjct: 204 NKLYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIE 263

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++ ++ +ID+  +  D A     P +      + L        A+P Y +    P   
Sbjct: 264 LEIVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAVPRHP 322

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   + I  G L       ++      R +       L+V S L   Q  + G+GI+ 
Sbjct: 323 DDLPGSHWIGHGGLANLS---YSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGAGISA 379

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            PDY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 380 FPDYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 426


>gi|313106107|ref|ZP_07792364.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310878866|gb|EFQ37460.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 291

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA  LH+ Q+++ R+++ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDTRVFLALCREHTLRGAARALHIDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G     +  ++           +    + SG++R++TT  L  + +   L    L +PDI
Sbjct: 61  GEAAFELAEKMECSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLEHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L   +  +D+     D AIR  +P ++  LI RKL +  M  +A+  YL+    P+ 
Sbjct: 121 RVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNGVPVP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +    H+L+ +        E    L     PI + R+  + VNS + + Q    G G+ 
Sbjct: 180 GERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARGLGLC 234

Query: 243 LLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP Y+ + +  LVR+         + V+    + L++T +++A    +     +
Sbjct: 235 ELPLYMGERDG-LVRVWPQRERRRPYEVWMVTHKDLRHTARVRAVIERLVEAFAE 288


>gi|297516999|ref|ZP_06935385.1| putative DNA-binding transcriptional regulator [Escherichia coli
           OP50]
          Length = 260

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 3/238 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +++F  VA   SF+ AA+   L + S+SRQI  LE ++G +L  R  R + LT 
Sbjct: 25  MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G   ++   +V   L       Q+ +   SGKLRI     + ++LL   L EFL L+P 
Sbjct: 85  EGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPG 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+++L   ++ +DI  D  DC IR    +    +I R L  + M   A+PHYL     P 
Sbjct: 145 IELELSSHDRPVDILHDGFDCVIRTGA-LPEDGVIARPLGKLTMVNCASPHYLTRFGYPQ 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S  +L  H ++ +   +      F  +A+V+          L VNS  + +   + G 
Sbjct: 204 SPDDLTSHAIVRYTPHLGVHPLGFE-VASVNGVQWFKSGGMLTVNSSENYLTAGLAGL 260


>gi|197295602|ref|YP_002154143.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195945081|emb|CAR57706.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 301

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 121/289 (41%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF RH R + LT  G 
Sbjct: 8   LNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGRPLFERHNRRVELTAAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++     +    + +    LR++         L   L  F + +P I++
Sbjct: 68  AYLAEVGASFDRIALATAQHFGHAQQR--VLRVSAPATFSLRWLVPKLSSFQVAHPAIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ I+   D  D  +R   P      +  + ++       AP  L+  R   +  
Sbjct: 126 RLSTSNEPIEKLRDKVDLIVR-GGPQAIDGYVAEEFLSEVRLPVCAPKLLEG-RSLDTPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +  L+          E   WLA    P   PR S L +  +   +Q  + G G+A+ 
Sbjct: 184 DLARFTLLHAATYPGMWPE---WLAAAGHPNLVPRHS-LTLEHFYLTLQGALDGLGVAMG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V D+     LV+   +   P +  +     A  +   ++AF++++
Sbjct: 240 PIALVADDIAEGRLVQPFSEPALPPWRYFTYVASARADDDAVRAFKDWL 288


>gi|13471864|ref|NP_103431.1| glycine cleavage system transcription activator [Mesorhizobium loti
           MAFF303099]
 gi|14022608|dbj|BAB49217.1| glycine cleavage system transcription activator [Mesorhizobium loti
           MAFF303099]
          Length = 303

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 118/297 (39%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   AR  SF+ AA++L+L+  ++SR I  +E  +GI+LF R  R + LT  G+
Sbjct: 8   LTALPAFDAAARHLSFSRAADELNLTHGAVSRAIRNIEDRLGIQLFDRGTRSVRLTAVGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                        +     +  +  + +  L ++T+       L   L  F     DI +
Sbjct: 68  AY--AVEVGKALDQIAAATIAATPDRSTRILNVSTSDGFAGRWLVPRLHRFHRANADIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L       D   D  D AIR  K    + +    L    +    +P  L+         
Sbjct: 126 RLATSGVLADFVSDGIDIAIRYGKGG-YTGVTAEFLADEEVFPVCSPELLQGEHPLRLPG 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI     I    +   WL        +P+    + +S    ++  V G G+ L 
Sbjct: 185 DLRHHKLIHDAFRI----DWATWLQQAGVDGIDPKRGV-RFDSATFAVEAAVHGEGVLLG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDW 297
              +V  +     LVR  +  +  + + Y  YP+      K++AFR+++F + A DW
Sbjct: 240 RSALVSADLAAGRLVRPFDLALKSAASYYLVYPDGALRQKKIRAFRDWLFAEVAADW 296


>gi|206559416|ref|YP_002230177.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035454|emb|CAR51332.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 305

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 118/297 (39%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+I+ LE  +G++L  R  R  T+T+ G
Sbjct: 7   DLNDLYYFVQVVEHGGFAPAGRALDMPKSKLSRRIALLEARLGMRLIQRSTRRFTVTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +     +P G +R++  I L  +L+   +  F+   P ++
Sbjct: 67  QTYYAHCRAMLVEADAADEAIALLHEEPRGIVRVSCPIVLLDSLVGTMIAAFMAACPRVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S L  R L        A+P  L+    P  
Sbjct: 127 IHLEATNRRVDVVGEGIDVAIRVRPPPLEDSDLALRVLAERGQCLVASPALLREHGVPAV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +    +    +P+    +                       L++    V G G+ 
Sbjct: 187 PADLTRLP--SLDHGVPQSTHVWRLRGPDGAQAEIHHQPRFVTGGMLALRAAAVAGVGVV 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +V+D      L  ++ D       V+  +         ++A  +F+  +  +
Sbjct: 245 QLPTMMVRDEVARGELTTVLPDWAPRREIVHAVFASRRGLLPAVRALLDFLAERFAE 301


>gi|149921588|ref|ZP_01910038.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
 gi|149817540|gb|EDM77009.1| transcriptional regulator, LysR family protein [Plesiocystis
           pacifica SIR-1]
          Length = 304

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 127/306 (41%), Gaps = 20/306 (6%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +  F  +  +GS T AA  L  SQ ++ R ++ LE  +G  L  R  R ++LT 
Sbjct: 1   MDKLAAMHTFVEIVDAGSLTAAAGSLGCSQPTVVRTLAKLERSLGATLLRRTTRRMSLTN 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQ---ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           +G         +   +   +  +      + +P G+LR+   +  GQ  +   +  FL  
Sbjct: 61  EGRVYLDDCRRILADVAAAEALVSTTGADAREPQGELRLTAPVLFGQRHVCPAVLAFLER 120

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC- 177
           +  +Q+ ++L ++ +D+  +  D A+R+ K +  SS+I R++ ++     A+P  L  C 
Sbjct: 121 HAKVQVDMLLLDRVVDLVDEGIDLAVRIGK-LADSSMIARRVGSMRRVVCASPALLARCG 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P   + L     + F         D   +    R +     + +Q          C  
Sbjct: 180 GAPGHPKALRALPCVRFRGARSWAFADGLQIRVDGRLLVNQAAAAVQA---------CEQ 230

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK- 293
           G G A    Y V D+     L  ++ED   P+F V   Y +    T +L+A  +++    
Sbjct: 231 GIGFAAFLAYQVADSVAAGRLEVVLEDHEPPAFPVSLVYADPRLLTPRLRAILDWLAEAL 290

Query: 294 -ARDWK 298
            ARD +
Sbjct: 291 SARDAQ 296


>gi|327190409|gb|EGE57505.1| transcriptional regulator protein (activator), LysR family
           [Rhizobium etli CNPAF512]
          Length = 289

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 127/292 (43%), Gaps = 12/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L ++Q+++S+Q+  LE  +G+ LF R  RGL +T +G 
Sbjct: 8   LNGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKRLEKRLGVALFQRLPRGLKITAEGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    S  + ++ TT   ++   V+    L +          L   L +F   +P I +
Sbjct: 68  ALLPTVSASFDQMATTLDRIEAGQVREL--LFLGVVGTFAVGWLLPRLADFQRRHPFIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +N  +D + +  D AIR        +   + L    + A   P    + R P    
Sbjct: 126 RISTNNNRVDPAAEGLDFAIRFGSGSWHGT-EAQHLFEAPLSALCIPELADDLRTP---A 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  E   W A    P      + +  +S +++M+  + G G+AL 
Sbjct: 182 DLAGVTLL----RSYRADEWSTWFAAAGVPPAAQVNAGIVFDSSVAMMEAALQGLGVALA 237

Query: 245 PDYIVKDNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +   + +   I++         + +    ++   T  ++AF ++IF++A
Sbjct: 238 PPSMFSRHLSSGAIVQPFTPTISLGSYWLTRLQSRPVTPAMRAFSDWIFVQA 289


>gi|262372784|ref|ZP_06066063.1| LysR family transcriptional regulator [Acinetobacter junii SH205]
 gi|262312809|gb|EEY93894.1| LysR family transcriptional regulator [Acinetobacter junii SH205]
          Length = 320

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T
Sbjct: 22  MQNKLEMMRIFCVAAESRNFKEAATQLGISPQVVTRAIKELEEQRGEILFYRSTRQIKIT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G +L +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   Y
Sbjct: 82  ADGERLAKQARLAVGSIDALLVKDTKEKRDEMRGTVRLTVSSVLGRKLVVPALAEFATRY 141

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI +  +L +   D+  +  D  IR    +  +  + R+L  ++ ++   P  +     
Sbjct: 142 PDIVVDCVLTDSHSDVIDERIDIGIRFGF-LPDNRYVARELAKVNFYSVGTPELIDKVGM 200

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  I +LDK+ L    D   K    + W  T  R    P       +   +  Q  + G 
Sbjct: 201 PKKIIDLDKYPLTALVD--HKTGRYWPWTFTESRSF-TPSKPRFITDDLEAEFQAILAGV 257

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G   +P ++V     +  L++I+ +  +P + +Y   P+      +++A  +++  
Sbjct: 258 GFGHMPGFLVLPWLRSGKLIQILHEETSPVWRLYLYRPQLGPTPLRIRALFDYLVE 313


>gi|161870774|ref|YP_001599947.1| LysR family transcriptional regulator [Neisseria meningitidis
           053442]
 gi|161596327|gb|ABX73987.1| LysR-family transcriptional regulator [Neisseria meningitidis
           053442]
          Length = 272

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 123/262 (46%), Gaps = 6/262 (2%)

Query: 35  SRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGK 94
           S+ +S LE  V  KL +R++R L+LTE G + +R  S     L+    +    + KP G 
Sbjct: 3   SKHVSHLENTVQAKLLHRNSRNLSLTEAGEEYYRQCSYALDTLDDAAQKAAGGTEKPQGL 62

Query: 95  LRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSS 154
           LR+   +    + +   L E+   YP++ ++LILDN+ +D+  +  D A+R+ + + S S
Sbjct: 63  LRVTMPLWFAGSQICNWLAEYRERYPEVTLELILDNRHVDLIAEGVDLALRVSQTL-SPS 121

Query: 155 LIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP 214
           LI R L  I     A+P +L+    P + +E+     +       + ++      +  + 
Sbjct: 122 LIARPLAEIEFALLASPDFLRRNGVPETPEEVAGLPAVLPTYTNQQKLDLTR--KSDGKK 179

Query: 215 IGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYF 271
                   ++ ++ L + +    G+ I   P +  + +    +LVR++ +   P+  +  
Sbjct: 180 YRLELTPVIRTDNTLMMREMIKAGACIGYQPLWAAEHDLRCGSLVRLLPEYTVPTDRLNA 239

Query: 272 CYPEALKNTGKLKAFRNFIFLK 293
            Y +    + K+++F +F+  K
Sbjct: 240 VYADRAFLSAKVRSFIDFLNEK 261


>gi|167826669|ref|ZP_02458140.1| LysR family regulatory protein [Burkholderia pseudomallei 9]
 gi|167921367|ref|ZP_02508458.1| LysR family regulatory protein [Burkholderia pseudomallei BCC215]
          Length = 304

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 120/285 (42%), Gaps = 7/285 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LRVF  +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G+K
Sbjct: 2   NHLRVFMAIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAGNK 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+  +      L      ++    + +G LR+A         L      F+  +P I+++
Sbjct: 62  LYCASQAFVSGLYDVIGSIRCLRHESTGLLRVAAPSGFSTTHLSSIAATFIHQHPQIELE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++ ++ +ID+  +  D A     P +      + L        A+P Y +    P    +
Sbjct: 122 IVCNDDEIDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQVLVASPEYSRRHAVPRHPDD 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L   + I  G L       ++      R +       L+V S L   Q  + G+GI+  P
Sbjct: 181 LPGSHWIGHGGLANLS---YSVFGNEGRSVRIQTPGRLKVKSVLLAHQMALAGAGISAFP 237

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           DY+V ++     L R++     P   +Y       + + + + F 
Sbjct: 238 DYLVAEDLREGRLHRLLPTWTMPKGGIYAFRTAPRQASVRERLFL 282


>gi|90577898|ref|ZP_01233709.1| Hypothetical transcription regulator [Vibrio angustum S14]
 gi|90440984|gb|EAS66164.1| Hypothetical transcription regulator [Vibrio angustum S14]
          Length = 311

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 132/299 (44%), Gaps = 14/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            DK+  F  V R  S T AA+Q  +S S+ SR ++ LE  +G+ L  R  R +T T+ G 
Sbjct: 2   LDKIVFFLHVVRCNSVTDAAKQYGISPSAGSRWLTELEENMGVSLVKRTTRKITPTQAGK 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L +  S + +++     E++       G +RIA+T    ++ L   + E++   P I  
Sbjct: 62  LLFKQFSHINNQITDAINEIKNLGNDDIGTIRIASTPLFAKHFLSKIIGEYISDNPTINF 121

Query: 125 QLILDNKDIDISMDYADCAIRL-----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +I    ++D   D  D AIR          + S L++R L +  + A  +P Y+K   E
Sbjct: 122 VVIETAFEVDNVHD-VDFAIRANATYRGFQNKDSLLVKRSLFSEPLKACCSPSYIKRYGE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P+   +L KH  +    L+        W+   +      +I   ++V+    +    + G
Sbjct: 181 PIIPHDLKKHLCLFATTLVGGN----KWIFEQNGEYNSIQIPRSVEVDDSEILKNIALAG 236

Query: 239 SGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIA LP  ++K +     LV ++ + ++  F +   Y        +   F++++  + 
Sbjct: 237 GGIAYLPYSLIKQDLQEDRLVTVLNNYVSSEFELSLYYKPRKYMPVRCANFKDYLLKRV 295


>gi|54309487|ref|YP_130507.1| LysR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46913923|emb|CAG20705.1| hypothetical transcriptional regulator protein, LysR family
           [Photobacterium profundum SS9]
          Length = 311

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 137/299 (45%), Gaps = 13/299 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L++F+ +  +GS   A+E   L +S+ISR+I  LE E+ I LF+R  R L LTE 
Sbjct: 1   MKTEDLKLFHQIVDTGSLNRASEIFDLPKSNISRRIKSLEEELNILLFHRQNRALQLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GSK +  T  +   LE +  E+   + + SG LRI          +   +  F+ +YP I
Sbjct: 61  GSKFYTKTKAMLIDLEASIQEITAPTYEVSGHLRIQLLPFPEILDIGKMIFTFMDMYPKI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKP--IQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++I   +D ++  ++ D A+R+ +   ++ SSL+ R         +  P Y+K    P
Sbjct: 121 SVEIITSAEDKNMVENHIDIALRVGEGNTLEDSSLVARPFKHASFGFFCTPEYVKQHGRP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L + N+I F     +   +  +     +         L +NS    M+ C+   G
Sbjct: 181 QTADDLRQLNVIRFRFPNGQIYGNLPF----GKDETVEVSGNLVMNSVPLCMEACLQNRG 236

Query: 241 IALLPD----YIVKDNPNLVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRNFIFLKA 294
           I  +P+    Y ++ +  L+R+  D I PS    +  YP     T   + F  FI  + 
Sbjct: 237 IVFIPEDIGNYYLERD-MLIRLF-DHIEPSIKYGWLVYPSRKNLTLAARTFVEFILAEV 293


>gi|186471949|ref|YP_001863267.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184198258|gb|ACC76221.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 304

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 127/298 (42%), Gaps = 9/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA +L ++++++S  ++  E  +G++L  R  R +  TE 
Sbjct: 1   MDVNALTLLVEIIDAGNLSEAARRLKMTRANVSYHLNQFEKSLGLQLVRRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL+     +   L   Q  +        G++R++     GQ ++   L  F   YP I
Sbjct: 61  GLKLYEHGRAIRSSLLAAQESVSTLGESLRGRVRLSVPSGYGQLVMSAWLIAFKRNYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+  Y      P  
Sbjct: 121 VLDVMFENRVEDLLRDEVDIAVRVMSE-PPQNLVARDMGPVRWVACASSAYAARYGMPAD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L    LIT   +  +              + EP    +   ++L + +  + G G+ 
Sbjct: 180 LHALRTAPLITSAVVGRQLRLAAYLRDERHEVLLEP---GVISENFLFLREAILAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+PDY+V D+    ++V  ++      F   +Y  Y     +T     F  F+  +AR
Sbjct: 237 LVPDYVVHDDIRRGDVVTALDPWRLSIFGTNMYMLYMPNRHHTRATAQFIEFMLDEAR 294


>gi|171320289|ref|ZP_02909343.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171094465|gb|EDT39525.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 299

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 129/293 (44%), Gaps = 14/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F  AA++L ++Q ++++Q+  LE  V ++LF R  RGL LT +G 
Sbjct: 13  LNALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDVVEVQLFRRLPRGLALTREGL 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           +      L E        L ++TT       L   L +F  L+PDI++
Sbjct: 73  EYFSSVQRALQIISDATDALGERPT----VLAVSTTPSFASKWLIPRLSDFGRLHPDIEV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D +      D  D AIRL KP   + L    L  + + A A+P  L       +  
Sbjct: 129 RVIADERLASFRADGVDIAIRLSKPPFPAGLAAELLAPLDVFAVASPTLLDGGPPIRTPA 188

Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H L+    DL P+ +E        D   G       + +  L  +   V G GIAL
Sbjct: 189 DLSTHALLHDAHDLWPEFIEKLGGKGQADPTKGP------RFSQSLLAIDAAVAGQGIAL 242

Query: 244 LPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + +V+ +     L R+ +     S   Y  +P+A  ++  L+A R ++F +
Sbjct: 243 TSEPLVERDIAEGWLRRVFDFSFPMSLGFYVVFPQANAHSEALQAMRRWLFAQ 295


>gi|170750184|ref|YP_001756444.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656706|gb|ACB25761.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 302

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 126/291 (43%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD LR F  VAR+G+ + A  +     +++ R+I  LE  +G +LF+R   G  LTE G
Sbjct: 7   NWDDLRFFLAVARTGTLSAAGARTGTEHTTVGRRIRALEEGLGARLFHRSNLGYALTEDG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L  V   +     +     + +    SG +RI      G   L   +      +P ++
Sbjct: 67  ANLLGVAEAMESAFLSASAATEAAQT-VSGTVRIGAPDGFGSVFLAPRMHRLTARHPGLE 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++   +   +S   AD  I L  P Q + ++ R+L    +  YAA  YL        +
Sbjct: 126 VEIMATARIFSLSKREADIVISLSGP-QQARVVARRLTDYRLLVYAAETYLAGAAPIAEV 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  + + + +      F         +G P  + L+  + L+ +   + G+G+ +
Sbjct: 185 GDLSGHPFVGYIEDM-----LFTRELNYLGALGPPVSARLRSTNLLAQVHATLGGAGLCV 239

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP +I   +P LV ++   +  + + +    E  +    ++A   FI  + 
Sbjct: 240 LPAFIAAAHPGLVPVLPGAVALTRSFHMHIHEDHRKAAHIRAVAGFIAGEV 290


>gi|113867777|ref|YP_726266.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526553|emb|CAJ92898.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 317

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 127/292 (43%), Gaps = 11/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR+GSF+  A +     SS++RQI  LE E+G+ LF R  R L  TE G  
Sbjct: 8   ENLATFVDVARAGSFSAVARRKGQVASSVARQIDALEREMGVALFTRSTRALVRTEAGDL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +  +L  T+  +       SG+LR+A      +  +  +L      YP + ++
Sbjct: 68  LFERATRILQELNETRDAVTALEQGVSGRLRVACLPAFARRHVVPHLGSLYAQYPGLTVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D  ++  D  IR+ +    SSLI R++ +      A P YL+    PL  +E
Sbjct: 128 LELTDRVVDPVLERFDVVIRVGQQ-ADSSLIARRIASQRYIVCATPAYLQAHGRPLHAEE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H LI              W   +           ++ +   +     + G GIAL+P
Sbjct: 187 LAHHRLI----DRAHSTSMRGWREVLRPAHAASAAFAMECDDCDARRLSVLQGLGIALMP 242

Query: 246 DYIVKDNPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFL 292
           D+ V ++    R++E ++          ++     A +   KLKAF   +  
Sbjct: 243 DWSVGEDIGAGRLVELLLEGVLPQAQGGIHLV-RAAPRPPAKLKAFSAHLLQ 293


>gi|254523314|ref|ZP_05135369.1| transcriptional regulator LysR family [Stenotrophomonas sp. SKA14]
 gi|219720905|gb|EED39430.1| transcriptional regulator LysR family [Stenotrophomonas sp. SKA14]
          Length = 298

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+ F  VAR GSFT AA QL +SQS++S  + GLE  +G++L  R  R ++ TE G
Sbjct: 5   NLNDLQAFVHVAREGSFTRAAAQLGVSQSALSHAMRGLEQRLGVRLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L    +    ++E     L E   +P+G +RI  T    + +    L   L  YP+++
Sbjct: 65  AHLLETLAPRLAEIEDGLAALAEYRERPAGTIRINATGHAAEYIAWPRLAPLLQQYPELK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L  D    DI  +  D  IRL + +    +       + M    AP Y +    P   
Sbjct: 125 MELAADYGLADIVAERYDIGIRLGERLARDMVAVPISPPLRMRVVGAPAYFRQHVVPQHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L +HN +T    +P       W    D      R+S     NS        + GSG+A
Sbjct: 185 HDLAEHNCVTL--RLPTHGGLMPWDFGQDGNELSVRVSGQWIFNSMGMTRAAALAGSGLA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+  V+   D+  L  +++D        Y  YP     T  ++   + +
Sbjct: 243 WLPEDQVQPMLDDGRLQSVLDDWCPHFDGYYAYYPSRRHVTVAMRTVLDAL 293


>gi|226939398|ref|YP_002794471.1| Transcriptional regulatory protein LysR family [Laribacter
           hongkongensis HLHK9]
 gi|226714324|gb|ACO73462.1| Transcriptional regulatory protein LysR family [Laribacter
           hongkongensis HLHK9]
          Length = 307

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 127/294 (43%), Gaps = 11/294 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++R+   VA  GSF  AA  L LS  ++S+ ++ LE ++G+++F R+ R +  T 
Sbjct: 1   MDQLGQIRIALKVAELGSFAAAARALKLSTGAVSQSVARLEGQLGLRVFERNTRQVRQTV 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG +L      +   ++    E   S     G L +  +      ++   L +F+  +P 
Sbjct: 61  QGEQLLDRLRPLVRAMDGVL-EPGLSRQPVRGVLTVELSESFANAVVIPRLPQFMARHPA 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + + L  +  ++S +  D A+R  +PI+ ++   R+L    +   AAP YL     P 
Sbjct: 120 LSLIIHLSERATNLSREPIDVALRTVEPIEPAA-RYRRLRAFALVPVAAPDYLARAGTPQ 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I F     +      +       I  P    + +++  + +     G GI
Sbjct: 179 HPLDLLQHQRIDFLTPYDRKAWP-AYFYRDGEEIEIPPQGRIALDNSQACLALARQGMGI 237

Query: 242 ALLPDYIVK-----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               DY ++      +  L RI+ D    S+ ++  Y      +  ++AF +F+
Sbjct: 238 --YADYALQLKDDLTSGRLQRILPDWDMLSWPLFAVYKNEGPPSAAVRAFLDFL 289


>gi|221209392|ref|ZP_03582373.1| putative choline sulfate-utilization transcription factor
           [Burkholderia multivorans CGD1]
 gi|221170080|gb|EEE02546.1| putative choline sulfate-utilization transcription factor
           [Burkholderia multivorans CGD1]
          Length = 305

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 109/289 (37%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 11  QALRAFESAARLASFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGVTLTADGEC 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 71  LYEAVRLSLDTLRGATATLRARRE--HGTLTIVTDFGFATYWLMPRLAGLKRVMPDVDVR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+AD AI        S    R L    +    +P +          + 
Sbjct: 129 VVTS-QDYDAQRDHADIAILFGDGHWPSCTAAR-LFAESVTPVCSPAFRDAHPHVSRPEH 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    +           +     +  NSY  ++   +LG G+AL  
Sbjct: 187 LAALPLLHVQPTRPERWLSWAGWFDAHGLDAQAAARGVTFNSYALVIHAALLGEGVALGW 246

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +      LV++++  +  S   +   P           FR ++ 
Sbjct: 247 SPLVDELVAAGQLVKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 295


>gi|330821734|ref|YP_004350596.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373729|gb|AEA65084.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 293

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 132/298 (44%), Gaps = 16/298 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   + LR F   +R  SFT AA++L+++Q+++S+Q+  LE  +G+ LF R  RGL +T+
Sbjct: 4   NLPLNALRAFESSSRHLSFTRAAQELNVTQAAVSQQVRALEERLGVSLFKRLPRGLAVTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L  V S+ + ++E+   + +         L +          L   L+ F  L+P 
Sbjct: 64  EGLALRPVLSDAFDRIESVLRQFEGGHFHE--VLTVGAVGTFAVGWLMPRLRSFHALHPF 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+ +N  +D++ +  DCAIR            +KL    +    AP   +  R P 
Sbjct: 122 VELRLMTNNNLVDLAAEGLDCAIRFGDG-NWPGTRAQKLFDAPLSLLCAPDIAQRLRVP- 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L    L+       +  +  NW A         R +    +S   +++    G+G+
Sbjct: 180 --ADLVGETLL----RSYRADDWMNWFAKAGLAPMPARGAVF--DSSRLMVEAATQGAGV 231

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           AL P  +   +     LVR   D+   + + +    +    T  ++ F  +I  +A +
Sbjct: 232 ALAPASMFARDLATGRLVRPF-DIEVQAGSYWLIGQKGKPATPAMQLFNQWIVKQAEE 288


>gi|192292236|ref|YP_001992841.1| LysR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192285985|gb|ACF02366.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 315

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 134/290 (46%), Gaps = 7/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + +DW+ +  F  VAR  S   AA +L +  +++SR++  LE  +   LF R   G TLT
Sbjct: 8   IRYDWNDVVYFLEVARQRSLVRAAAKLKVDHTTVSRRVRELERSLNSTLFKRSKSGFTLT 67

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L +    +  +  +    +   +    G +RIA    +G   L   + +F  +YP
Sbjct: 68  EIGMRLLQYAEGMESQANSIVEAIGTDTADAGGAVRIAAMEGIGSFYLTRCIADFNRIYP 127

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            IQI+LI D + +D+S   AD  +   +P     L  +K+    +  YA   Y      P
Sbjct: 128 SIQIELITDTRLLDLSRREADIFVSFFRP-HGKRLSIKKVGEFRISLYATDAYFGGRSPP 186

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL+ H  I F +      E+  WL+ V R    P  +  +  S ++       G G
Sbjct: 187 TTVKELETHAFIDFIEDYIYSKEN-RWLSDVLR----PPHTIFRSTSLVAQSIAVSAGQG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           IA+LP Y+   N  L  +M ++ T +  ++    E L +  ++KA   F+
Sbjct: 242 IAMLPSYVASGNAELFPVMPELFT-TRDIWLSVHEDLLHVARIKAVTTFL 290


>gi|325272498|ref|ZP_08138876.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324102359|gb|EGB99827.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 299

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 61/291 (20%), Positives = 112/291 (38%), Gaps = 8/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LRVF   AR   FT AA  L  +Q ++S+Q+  LE ++G +LF R  RG+ LTE 
Sbjct: 8   LSLDTLRVFEAAARLRGFTAAALALGTTQPAVSQQVKRLEAQLGTRLFDRVYRGIELTEA 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     +    ++    ++     +    L++AT        L   L+ F   YP +
Sbjct: 68  GQLLFEHVHQGLQAMDEGIAQVSGRGQRE--VLQVATDFAFAAFWLMPRLQRFHEAYPHV 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+   +   +     D A+             R L    +    +P  +    +P+S
Sbjct: 126 DVSLVTGERSQGMLRPDIDVAVLFGDGRFHQG-ESRWLFDEEVFPVCSPRLI--HGKPMS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +  L+           D+  +         P    L+ ++Y  ++Q  + G G+A
Sbjct: 183 AVALQRLPLLHLKGEQASRWFDWAGVFRGFGVASPPPAGQLRFDNYTLLIQAAIAGQGVA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   ++V    +   L R +E  +      Y   P   +    ++ F  ++
Sbjct: 243 IGWGHLVDGLVEQGLLCRPLEGSLRSERGYYAVLPPRKRRGALIERFVGWL 293


>gi|150377386|ref|YP_001313981.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150031933|gb|ABR64048.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 300

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 114/288 (39%), Gaps = 5/288 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + L  F  VA   SF  AA+++  + S++S  +  LE  +G++L +R  R ++ TE G
Sbjct: 5   SLNDLTAFVAVATHRSFRRAADEIGTAPSTLSHAMRALEERMGVRLLHRTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          L+     +       +G +RI     +   L++  + +    +PD+ 
Sbjct: 65  LRLLGRLQPALVSLDEALDSVAGFRGNIAGTVRINAPRLVAGLLVREVVPQMAGRHPDVT 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + ++++ + IDI     D  +RL   I    +       +     A+  YL    +P + 
Sbjct: 125 VDIVVEGRLIDIVSSGFDAGVRLLGSIPKDMIAVPFARPLTFICIASTDYLDRFGDPGTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL +H+ I  G  +P             + +       + ++    +++  + G GIA 
Sbjct: 185 EELQRHHCI--GHRMPSGKFYRWEFERAGQELVIDANGPIVLDDEELMVEAAIEGLGIAY 242

Query: 244 L---PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +          +  L +++   +     V   YP        L+AF +
Sbjct: 243 VADWAAEAALADGRLRKVLTAWMPAPERVAVYYPGHRAVPPALRAFLD 290


>gi|293609741|ref|ZP_06692043.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828193|gb|EFF86556.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122963|gb|ADY82486.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 309

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 124/292 (42%), Gaps = 7/292 (2%)

Query: 5   WDKLR---VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D+LR   VF  V    SF+ AA +L ++ S++S+QI  LE E+ + L +R  R L+LTE
Sbjct: 2   LDQLRAMGVFACVVEKSSFSGAARELGITTSAVSQQIRSLEHEMDVILLHRSTRKLSLTE 61

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        E+    E  +I + E      G LRIATT DL    L   L  ++  +  
Sbjct: 62  AGQAFFSSCQEMLAAAERGKIRINELRDDLIGDLRIATTPDLAVQHLIPALSHWMSAHRG 121

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +   + ++ ID+  +  D A+R+       S     +  +     A+P YL      +
Sbjct: 122 LSVHFEVGHRYIDLIEERIDIAVRMSSTPVEESSSVIPMAFVDQILVASPSYLNQSSPIV 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H L++   +       F  + T    +     S LQ N+       C  G GI
Sbjct: 182 HPNDLRDHELLSINVMNDAHHFHFQHVKT-GETLNVEMQSRLQSNNLQVAKALCQQGHGI 240

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A +     +    N +L+ +M D   P+FT+Y    +  +   K++     +
Sbjct: 241 ARILYLDAQKELKNGSLIELMPDWKLPTFTLYAEVAKHDQQPMKIQRCVEAL 292


>gi|49083088|gb|AAT50944.1| PA1138 [synthetic construct]
          Length = 292

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA  LH+ Q+++ R+++ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDTRVFLALCREHTLRGAARALHVDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G     +  ++           +    + SG++R++TT  L  + +   L    L +PDI
Sbjct: 61  GEAAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLEHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L   +  +D+     D AIR  +P ++  LI RKL +  M  +A+  YL+    P+ 
Sbjct: 121 RVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNGVPVP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +    H+L+ +        E    L     PI + R+  + VNS + + Q    G G+ 
Sbjct: 180 GERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARGLGLC 234

Query: 243 LLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP Y+ + +  LVR+         + V+    + L++T +++A    +     +
Sbjct: 235 ELPLYMGERDG-LVRVWPQRERRRPYEVWMVTHKDLRHTARVRAVIERLVEAFAE 288


>gi|197295346|ref|YP_002153887.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195944825|emb|CAR57431.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 318

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 6/294 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             +        +GSF  AA QL ++ +++S+ ++GLE  +G++L  R  R L LTE+G  
Sbjct: 8   RAIVSLVQAVDAGSFAAAARQLGVTSAAVSKNVAGLEKALGVRLMNRTTRTLKLTEEGEV 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R        L+     +      P+G++RI+T+   G N +   L   L  YP + ++
Sbjct: 68  FLRHARIALETLDAAIDTVSAQRAVPAGRVRISTSAAFGHNHVLPALPALLARYPALSVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D++ IDI  D  D A+R    I  S+L+ R +  ++    A+P YL N   P +   
Sbjct: 128 VDFDDRVIDIVRDGYDIAVR-GGNIPDSALVTRPICRLNTVLVASPDYLANHGVPETPDA 186

Query: 186 LDKHNLITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H LI    L  +    +F         I     + L +++  S++Q      GIA +
Sbjct: 187 LHAHRLIARRFLSGQVAPWNFTGDDKSITTIDPSGKAMLTLSAPESLVQAACDSVGIAEV 246

Query: 245 PDYIVKD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             ++  D   +  L  I+     P S+ +   YP       +++     +    
Sbjct: 247 GVHLAWDRLRSGALKVILHRFHHPGSYEMVMQYPHRALVAPRVQVTVKHLLEAL 300


>gi|163758432|ref|ZP_02165520.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162284721|gb|EDQ35004.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 305

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 121/292 (41%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF    R  SFT AA +L ++Q+++S  I  LET++G  LF R  R + LTE G + H
Sbjct: 14  LIVFEAAGRHLSFTRAARELGMTQAAVSYAIRALETQLGAMLFQRAHRAVHLTEAGRRFH 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              +     +  +  +++       G + +A +       +   L+      PDI +++ 
Sbjct: 74  ADVTLGLGHIRKSAEDIKNRGKP--GIVTLAASTAFASFWMLPRLQRLRDDLPDIDLRIQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++D+DI  +  +  IR  +P          +    + A A   YL+   EP SI +L 
Sbjct: 132 TADRDLDIRTEAIELGIRGGRPEDWPDYDSALIAPEVIEAVATSAYLEKHGEPDSIDQLA 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H LI   +      +   W  +            L +N Y+ ++Q  + G G+AL   +
Sbjct: 192 QHRLIHLEEPFRSACDWQQWFKSAGVNATTANRG-LAINDYVLVIQAVLEGQGVALSWRH 250

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +      +  L ++    +      +  +P     T +     +++  + R+
Sbjct: 251 LTGRLISSGLLEKVTPHSLETGAAFHVIWPRGRSLTPQTSQVLDWLIKEGRE 302


>gi|326318995|ref|YP_004236667.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375831|gb|ADX48100.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 305

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 10/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  SG+ + AA +L ++++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDLPSLTLLVEIIDSGNLSQAARKLRMTRANVSYHLTKLEKAVGVQLVQRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + ++L   Q  +        G++ I+     GQ ++   L EF  +YP I
Sbjct: 61  GLRLYEHGRTIRNELMAAQEAVTTLGQGLQGRVGISVPSGYGQIVMGDWLIEFKRMYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  ++  D  D AIR+ +     SL+ R L  +   A A+  Y +    P +
Sbjct: 121 VLDVLFENRADNL-RDEVDIAIRVVQE-PPLSLVARSLGNVRYLACASADYARRHGLPRT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L    +IT G    +        A     + EP    L    +  + Q  + G G+ 
Sbjct: 179 LHALRAGPVITAGVTGRQLRLAAYQDAERHEVLLEP---TLISEHFPFLRQGILAGLGVG 235

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+PDY+V+D      +V  +++     F   +Y  Y      T  ++   +F+  KA
Sbjct: 236 LVPDYVVQDAIATGEVVTTLDEYRLSIFGTHMYLLYLPNRHQTRAVRTCIDFLLDKA 292


>gi|194292363|ref|YP_002008270.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193226267|emb|CAQ72216.1| putative transcriptional regulator, LysR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 302

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 126/297 (42%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + L  F  V     F  A   L + +S +SR+++ LE  +G++L  R  R  ++T
Sbjct: 1   MHPDLNDLYYFAQVVDHQGFAPAGRVLGIPKSKLSRRVALLEERLGVRLIQRSTRRFSVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +     +  + E  +  +++S  +PSG +R+   + L    +   + +F+   P
Sbjct: 61  ELGQTYYAHCKAMLVEAEAAESAIEQSRAEPSGLVRMTCPVALLHARVGEMVADFMAANP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + + L   N+ +D+  +  D A+R+R  P++ S L+ R L        A+P  L +   
Sbjct: 121 KVIVHLEATNRRVDVVAEGIDLAVRVRVPPLEDSDLVMRVLAQRAWCFVASPALLAHHGP 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            L+  +L++   +  G   P      +        +       L  +  + +    V G+
Sbjct: 181 LLTPADLNRLPTLDLGPPRPSHTWSLSGPGGASADLHHK--PRLVTDDMIMLRAAAVAGA 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+  LP  ++ D   +  LV+++ +       ++  +P        ++   +F+  +
Sbjct: 239 GVVQLPVMMMTDELRDGRLVKVLPEWSVKGGVIHAVFPSRRGLLPSVRELIDFLTQR 295


>gi|298717617|ref|YP_003730259.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361806|gb|ADI78587.1| Uncharacterized HTH-type transcriptional regulator ycjZ [Pantoea
           vagans C9-1]
          Length = 309

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 121/300 (40%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L     VA++G F  AA     + S +S  +   E ++GI+LF+R  R + LT
Sbjct: 1   MAIDMALLDAIVAVAKAGGFREAARITGSNASRLSDAVRRAEQQLGIRLFHRTTRTVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L        +++      +      P G LR+   +   + +L G + EFL  YP
Sbjct: 61  EAGRALMERLLPAMNEVNAALDAINRYRNTPGGTLRLNVPVSATRLVLPGLVPEFLRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++ ++   D+  D  D  IR  + ++   ++   +          A+P YL    
Sbjct: 121 DIRLEIVAESSVQDVFRDGCDAGIRYDERLEQD-MVAMPIGPRQQRFALAASPAYLAEHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN---SYLSIMQYC 235
            P   ++L  H  +  G      M D+   +     I       L V    +    +   
Sbjct: 180 RPDHPRDLIHHRCLR-GRYASGIMADWT-FSCDGEEISVETGGPLVVTVGGAMDLAVDAA 237

Query: 236 VLGSGIALLPD-YI--VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + GSG+  L D ++    D+  L  +++         +  Y +       L+AF +F+  
Sbjct: 238 IAGSGVIYLFDEWLRPALDSGKLEPLLQPWWLTFSGPWLYYNDRRLIPAPLQAFIDFVRE 297


>gi|119471256|ref|ZP_01613759.1| substrate-binding transcriptional regulator, LysR family protein
           [Alteromonadales bacterium TW-7]
 gi|119445722|gb|EAW27005.1| substrate-binding transcriptional regulator, LysR family protein
           [Alteromonadales bacterium TW-7]
          Length = 291

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 114/288 (39%), Gaps = 14/288 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +++L +F  VA+  SF+ AA  L +S+  +S QI  LE E    L  R  R + LT+QG 
Sbjct: 8   FERLFLFNEVAKHLSFSKAALALGISRGYLSEQIKALEKEYQRALLIRTTRSVKLTQQGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +      +   L   +  L       +G +RI          L    ++F   YPD++ 
Sbjct: 68  HVLSCMGNIKSTLLELERTLAHEHEAIAGNIRITAPSQFTNRYLLTICEQFNQEYPDVKF 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +       D+     D A R        ++I +KL +      AAP Y+    EP S++
Sbjct: 128 NIDCSYTPHDLIQSNYDIAFRSTLN-PPQNMIAKKLFSYKQVCCAAPSYIAKNGEPGSVE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH+ +T          D                  L +N    +    + G GI   
Sbjct: 187 DLLKHSCLTSTQFSLWHFSDRAIELE----------GKLSINDNHMLKNLALQGQGIIYT 236

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           P+Y+V    N   L  ++  +  P   VY  +P+ +  + ++  F  F
Sbjct: 237 PEYLVDLEINAHTLKPVLTQLQYPQSDVYLIHPQLINESARISRFIKF 284


>gi|90412966|ref|ZP_01220964.1| transcriptional regulator [Photobacterium profundum 3TCK]
 gi|90325981|gb|EAS42420.1| transcriptional regulator [Photobacterium profundum 3TCK]
          Length = 302

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 128/291 (43%), Gaps = 15/291 (5%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           + F  V   GS   AA +L+ S S++S+++S LE ++G++L  R  R LT+T+ G   ++
Sbjct: 8   KSFVTVVEQGSLAQAATKLNTSSSALSKRLSWLEKQLGVQLLKRTTRSLTVTDAGKLFYQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            ++ +    +    E   +  + SG LRI   +  G  LL   L EF+  YP IQ++L  
Sbjct: 68  RSARLLDDWQQMLAETTSTYGEVSGVLRIGAPLATGSRLLVNYLAEFIETYPKIQVELHT 127

Query: 129 DN--KDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               +  D+     D  I R      SSS I  +L       YAAP YL++     + Q+
Sbjct: 128 VTPGQLPDL---NLDVFISRELTDFNSSSYIATRLFDFQPGFYAAPSYLEDKPIIENHQQ 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  HN + FG    +    F      +  +           +  +++   V G GI L  
Sbjct: 185 LTMHNCLLFGTHGHEQEHIF------ENNLHLRLRGNFTTQNPEALVAAAVAGMGIILAG 238

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              VK       LV ++ ++  P  + Y  YP+   N  K K F +FI  K
Sbjct: 239 GNTVKRELSKGLLVPVLPELKQPISSAYAYYPKLDYNHVKTKLFIDFIKEK 289


>gi|91790917|ref|YP_551868.1| LysR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91700797|gb|ABE46970.1| transcriptional regulator, LysR family [Polaromonas sp. JS666]
          Length = 304

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 124/297 (41%), Gaps = 16/297 (5%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M   + + +RV    AR G+ T AA          S  +  LE ++G +LF R  R + +
Sbjct: 1   MKIENVEDIRVLVETARCGTLTAAAA---------SAMLKRLEAQLGARLFERSTRAMRI 51

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+QG  L    +     LE  + +L   S    G +R+A   DL +++L     +F+  +
Sbjct: 52  TQQGQTLLDYATRALELLEEGEAQLSSDSRSLMGTVRVAAPSDLTRSVLLPWFDDFISAH 111

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++ L + ++  D+  D  D A+R  + +  S L+ R L T      A+P YLK    
Sbjct: 112 PGVRLALTVTDRVQDVIRDTVDLALRYGE-LSDSRLVARSLFTTRRVLCASPAYLKCHAA 170

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           PL+ Q+L +HN +TF     +                         +      Q+ + G 
Sbjct: 171 PLTPQQLGQHNCLTFHLNNKRYATWR--FEKGGEWTEVRIDGDRDADDAAIAHQWGLAGE 228

Query: 240 GIALLPDY-IVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+    +  +V D  +  L+R++       + +    P       +++A  +F+  +
Sbjct: 229 GLLYKSELDLVHDLASGALLRLLPGWNGEHYPLNAILPSNRFVPARVRALVDFLAAR 285


>gi|326317816|ref|YP_004235488.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374652|gb|ADX46921.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 320

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +  ++  F  V  +GSFT AAE+L ++++ +S+Q++ LE E    L  R  R +T T+ G
Sbjct: 15  NLKRMAYFAAVVETGSFTAAAERLGITKAVVSQQVARLEREFRTTLLTRTTRRVTPTDAG 74

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H   + V  +      EL E   +PSG LR+   +D G   +   + EF   YP  +
Sbjct: 75  RAFHARCALVLKEAHDAFDELGEGVTEPSGTLRLTAALDYGITTVVPAVTEFTRRYPQCR 134

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +  IL ++ +D+     + AIR+   +   ++  R++        AAP +          
Sbjct: 135 VDAILSDQSLDVMSGQVELAIRVGW-LTDPAVQARQIGAFRQLLVAAPAWQGQVDALEDP 193

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q + +   +    L       F+    ++R  G    + + +++ L++ +   LG+G+++
Sbjct: 194 QGVARLPFVANTALREPTRWSFS-RGELERQ-GVSVHAVMSMDATLAVREAVRLGAGLSV 251

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           LPDY V ++     LV ++     PS  ++  +P A     K++AF + +  
Sbjct: 252 LPDYAVAEDLAAGRLVHVLPQWSLPSGGIHAVFPPARFRPAKVRAFVDLLQE 303


>gi|167905674|ref|ZP_02492879.1| LysR family regulatory protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 290

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 112/287 (39%), Gaps = 7/287 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S+++  LE ++G  LF R  RG+TLTE G++L 
Sbjct: 4   LSAFEAAARLASFTAAARELGSTQPAVSQRVVQLEEDLGTPLFERGRRGVTLTEDGARLF 63

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +    L     +++      +G   + T        L   L +     P + ++++
Sbjct: 64  AAVRQSLDALRAATADIRSRRA--NGTFTLVTDFGFATYWLMPRLDDLKRAMPGVDVRVV 121

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +DID   ++ D AI              +L   H+    +P +     +     +L 
Sbjct: 122 TS-QDIDPQREHTDVAILFGAG-DWPGCTSTRLFQEHVTPVCSPAFRTAHADIARPADLL 179

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +            P    L  NSY  ++Q  ++  G+AL    
Sbjct: 180 RAPLLHVQPTRPERWLAWRDWFDAHGLAAPPEPHGLTFNSYSLVIQAALMNQGVALGWAP 239

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +V        LVR+++  +      Y   P A      +  FR ++ 
Sbjct: 240 LVDTPIAAGQLVRLVDAPVVTPRGYYLVLPPARPEARAVPLFRRWLL 286


>gi|319791206|ref|YP_004152846.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315593669|gb|ADU34735.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 298

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 129/290 (44%), Gaps = 6/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + FDW  +R F      GS   A+  L  SQ ++ R I+ LET++G+ LF R  RGL  T
Sbjct: 7   LDFDWRLVRAFLAALDHGSLLAASRALGSSQPTLGRHIAELETQLGVVLFERTGRGLRPT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
              ++L      +     +    +  ++   +G +RI+ +    + +L   L       P
Sbjct: 67  AMAARLAESARAMESGAVSLSRSVSGANAATAGTVRISASQATARQMLPALLVRMRQELP 126

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +IQ++L+  N+  ++    AD AIR+ +P  + +++ R++    + A+A   YL+    P
Sbjct: 127 EIQVELVSTNEVSNLLRREADIAIRMTEPTTA-TVVARRIGRFALGAFAQADYLRRRGTP 185

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H+++ +  +             + R        C + +   +  +    G G
Sbjct: 186 RQTADLLRHDVLGYDRIDTIVRMSAQLGTPLQREDF-----CFRTDDMGAYWEALRQGMG 240

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I  + + + + +  + R++  +  PS  V+      ++   +++A  +F+
Sbjct: 241 IGFVSESLARTDSQVQRVLPQLKIPSLPVWLAVHREIRTDRRIRAVYDFL 290


>gi|292491839|ref|YP_003527278.1| LysR family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291580434|gb|ADE14891.1| LysR substrate-binding protein [Nitrosococcus halophilus Nc4]
          Length = 315

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 6/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + +R F  V   G+ + AA  L  ++ SISR+IS LE  +G  L  R  R ++ TE+G 
Sbjct: 12  LEDIRAFCAVIEFGTVSGAARTLGETKGSISRRISRLERRLGTALLARTPRAVSATEEGL 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E    L       ++S   P G LR+   IDLG ++L   + +F  LYP I +
Sbjct: 72  AFYAKAREALSLLADAAEGARQSRSVPQGHLRVTAPIDLGVDVLPSLVVKFRALYPQITV 131

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L+L +  +D++    D A+R +   +         ++  H+  YA+P YL     P   
Sbjct: 132 ELLLTDVALDLAAHRIDLALRAIPGELPDMGYRASTVIGFHIGLYASPAYLAAHNLPTMP 191

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q L +++ +   + I              R +        + + Y S+ +  + G GI  
Sbjct: 192 QALVEYDWVARQEGIGAA--KLVLTDRRGRAVEVSTRPVARASDYASVHRIILAGGGIGP 249

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP  +   +    +LV ++      +  +Y      L+   +++ FR FI  K 
Sbjct: 250 LPSMVAAASLAGGSLVPVLPGWAVAAGKLYAISLSGLEAPARVRLFREFIRSKL 303


>gi|15838331|ref|NP_299019.1| LysR family transcriptional regulator [Xylella fastidiosa 9a5c]
 gi|9106798|gb|AAF84539.1|AE003996_8 transcriptional regulator (LysR family) [Xylella fastidiosa 9a5c]
          Length = 296

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 124/290 (42%), Gaps = 10/290 (3%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V   GSF  AA + ++  SS+SR ++ LE E+G +LF R+ R L LTE GS        
Sbjct: 2   QVVHLGSFAAAAREQNVDPSSVSRAVAALEAELGTRLFARNTRHLALTEAGSVFTERLPL 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +  +L   +    +++ +  G+LR+  +       L   L  F   +P I++ L+L    
Sbjct: 62  LLEELSQARDAAVDTTGEVRGRLRVTVSNAFAMRHLSPLLPAFYEAHPAIELDLLLTESP 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQELDKHNL 191
           +D+  +  D AIRL   ++ SSLI   L+ I  H  A+P +++    PL   Q+L     
Sbjct: 122 VDLVSERVDVAIRLGN-LRDSSLIAVPLMPIRYHVAASPAWVRAQTAPLREPQDLQAIRC 180

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
           ++F     +    F   A     I       L   + L +    + G G  LL D+++ D
Sbjct: 181 LSFALAGFRDRWLFA-PADGGAEIEVHVRPRLVSTNALMLRDGALSGLGPTLLADWVIGD 239

Query: 252 N---PNLVRIMEDVIT----PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +     L  +    +        T +  YP       K++AF  F+    
Sbjct: 240 DLASGALEALFPGHVVRTAHSPTTAWAVYPSRSHVPAKVRAFVVFLQAAL 289


>gi|254184760|ref|ZP_04891349.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184215352|gb|EDU12333.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 315

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 118/288 (40%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    +              G +RI+ +  +G  +L   +      +P + I
Sbjct: 67  ALRAHAEAMESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHPALTI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+  D+    AD A+R+ +P Q+  LI R +  I +  +A   YL     P    
Sbjct: 127 ELALTNRVQDLLRREADIAVRMTRPGQTQ-LIARHIGGIELGLHAHRDYLARRGTPRDAG 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H LI          +        DR         L+ +S L+ +     G+GI   
Sbjct: 186 ELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----ALRTDSDLAQLALIRCGAGIGAC 240

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + K +P LVR++         ++    E L+ + + +A  + +  
Sbjct: 241 QAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAE 288


>gi|254419420|ref|ZP_05033144.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
 gi|196185597|gb|EDX80573.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
          Length = 301

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 125/291 (42%), Gaps = 8/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            WD  R F+ V R GS + AA +L +SQ SI+R I  LET +G KLF R  RGL+ T+  
Sbjct: 6   SWDLYRTFHAVLREGSLSGAARRLDMSQPSIARHIDALETALGAKLFLRTPRGLSPTDAA 65

Query: 64  SKLHRVTSEVYHKLETTQ--IELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            +L  +   +       +   E        SG +RI+ +  +    L   L      +P 
Sbjct: 66  LELKPLAERLAATSAALRRTAEGGGGGGALSGTVRISASEVVAVEHLPPILARMRQAHPG 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L   N   D+    AD A+R+ +P +  +L+ R +  + +  +A   YL     P 
Sbjct: 126 LALELSPSNALDDLLQRKADVAVRMVRP-EQQALVSRHVGALAIGLHAHRDYLARRGTPR 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L  H+LI +    P           + R         L+V+S ++ +     G GI
Sbjct: 185 TLADLKDHDLIGYDVETPAIRAAVQQYPALSRDAF-----ALRVDSDVAQLAAIRAGFGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +    +    P+LVR++ D    +   +      L+   + +A  + +  
Sbjct: 240 GICQTVVAARQPDLVRVLPDAFHMALETWIVMHGDLRGNARCRAVFDALVE 290


>gi|319781709|ref|YP_004141185.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167597|gb|ADV11135.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 298

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 115/294 (39%), Gaps = 12/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VAR GSFT AA++L L+Q ++SRQI  LE + G +LF R +R + L+  G
Sbjct: 10  NISALAAFEAVARLGSFTAAAQELDLTQGAVSRQIKLLEDQFGRRLFERDSRNVRLSASG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                       +L    + L     + SG L +A     G   L   + +F+   PDI 
Sbjct: 70  EIYAEAVRSALGQLRDAALGLMS--NRHSGMLNLAILPTFGTRWLMPMIPDFVENNPDIT 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I  +      D + +  D AI    P          LV   +    +P +L   R   + 
Sbjct: 128 INFVTRVGRFDFARERLDAAIHYGLP-DWPEADSTLLVRETVAPVVSPEFLAG-RAIAAP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ++ +  L+          E F       + +  P    +Q   + +  Q C+ G G+AL
Sbjct: 186 ADIGRLPLLHMATRPGAWTEWFE-----HQGLSAPTGPGMQFEQFGTAAQACMAGLGVAL 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP  ++        LV      +      Y   P   +    + +FR+++  + 
Sbjct: 241 LPLILIAGELQRGQLVPAPGQPMQSRSAYYLVVPHDKRGHPPVASFRDWLLGQV 294


>gi|264677321|ref|YP_003277227.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|299533859|ref|ZP_07047226.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|262207833|gb|ACY31931.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
 gi|298718143|gb|EFI59133.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 309

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 137/302 (45%), Gaps = 13/302 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F      GS   AA QL +S ++ S+ I+ LE E+G +L  R  R + LTE G
Sbjct: 3   NLRAIETFVKALEGGSIASAARQLGISPAAASQNIARLERELGTRLITRTTRSMALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                  + V  +LE  Q +L     +  G+LRIA     G+++L   L  F  L+P ++
Sbjct: 63  ESYLARVAPVLDELEKAQSDLSLIHGELQGRLRIACMAAFGRHVLAPLLPAFAALHPRLE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++ ++ +D+  +  D ++R R  ++   +  R L ++     A+P YL+    P S 
Sbjct: 123 LELLITDRHVDVLKEDVDISVRYRDVLE-PGMSVRLLASVPRILCASPQYLQQHGRPQSA 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L +H  + +       +  + ++    R   + +I+ +  +   +++++   G GIA 
Sbjct: 182 QDLLEHPCLLYRRERDGRLMRWPFMRDGQRTDPQQKIAAI-GSDIDALVEFAAAGGGIAW 240

Query: 244 LPDYIVKDNPNLVRIMEDVITP-----------SFTVYFCYPEALKNTGKLKAFRNFIFL 292
              +IV +     R++   + P               + C+ +      K++A  +++  
Sbjct: 241 AGSFIVHEEMRKGRLVPLALKPARKGQLQFEDAPLDFFACFKDRKYVPAKVRALVDYLLQ 300

Query: 293 KA 294
           + 
Sbjct: 301 EL 302


>gi|293608372|ref|ZP_06690675.1| predicted protein [Acinetobacter sp. SH024]
 gi|292828945|gb|EFF87307.1| predicted protein [Acinetobacter sp. SH024]
 gi|325121895|gb|ADY81418.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 296

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 131/296 (44%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT 
Sbjct: 1   MDRLDCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLRTTLLTRTTRQMNLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K ++ +  +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP 
Sbjct: 61  CGEKFYQHSKVILSEFEWAAYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREP 180
           I+I L + ++ +D++ +  D  IR+       +L   K++ T   + YA P Y      P
Sbjct: 121 IKIDLFMTDQLLDMNNNKFDLTIRVDG--SPPNLANSKILNTYQRYLYATPEYFNQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL +H  + +          F       + +       +  N+   ++  C+   G
Sbjct: 179 DSLEELKEHKFLIYYQDSRHKKLIFQ---KDQKEVSFNCFPVMTCNNGELLLDMCLKDHG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+  +
Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFLTRQ 291


>gi|113969450|ref|YP_733243.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|114046678|ref|YP_737228.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113884134|gb|ABI38186.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
 gi|113888120|gb|ABI42171.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 299

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 131/300 (43%), Gaps = 20/300 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  +  +GSF+ AA++L +  +++SR+++ LE ++  +LF R  R L LTE+G
Sbjct: 8   ELQLIYLFVHLVNAGSFSLAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +    V  + +       +   KP G LRIA  I +   +    L EF  LYPDI+
Sbjct: 68  LALFQRYQSVIAQFDELSGIGSD---KPEGTLRIAAPISIISIIFIRALNEFGRLYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   N+ +D+     D AI +      SS +   L  +    +A P YL    +    
Sbjct: 125 LHISQSNELVDLIDKGIDVAI-VGGAQPDSSWVSSTLGELDYRLFATPEYLATAPKLTHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGS 239
            +L+ H LI       K    FNW   +  P GE       + L +      +Q  +   
Sbjct: 184 DDLEAHQLI-------KVWPLFNW--HLKHPNGESFYFNGPTKLTLTDLHGAIQATLDHG 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI   P+  VK    +  L  ++ + I     +   Y +  +   K++ F  F+  KA +
Sbjct: 235 GILYGPELFVKQQIKDGQLKVLLPEWIGEQRRISILYHQRSQQPQKVRVFIEFMQSKAPE 294


>gi|258620122|ref|ZP_05715161.1| putative transcriptional regulator [Vibrio mimicus VM573]
 gi|258587480|gb|EEW12190.1| putative transcriptional regulator [Vibrio mimicus VM573]
          Length = 280

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 126/273 (46%), Gaps = 7/273 (2%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           + ++++++S+ +  LE ++ ++L  R  R ++LTE+G +L  +       +E    EL +
Sbjct: 1   MGITRAALSQHLKALEQQLQVRLINRTTRNMSLTEEGQRLLDILQPSLMSIEQVVNELND 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
           S V+PSG +RI+ +    + L++ +L EFL  YP I+++LI+D+   +I  +  D  IRL
Sbjct: 61  SHVEPSGLIRISVSRTAARLLIEPHLGEFLSRYPKIRLELIMDDGFSNIVAEGVDAGIRL 120

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
              +    +       +      AP Y +    P + +EL+ HN + +       ++ ++
Sbjct: 121 GISLDEHMVAVPITPPLTNAIVGAPDYFQRNGIPENPEELETHNCLAYRFTSSGTIDHWS 180

Query: 207 WLA---TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIME 260
             +        + +P+ + +  N   S++Q  + G G+    D  V+ +     L R++ 
Sbjct: 181 LTSPDIEKHTVVFKPKGNAV-FNDDHSMLQAAIQGVGLVKHIDLWVEKHINEGRLSRVLA 239

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                    Y   P       K++   +F+  K
Sbjct: 240 PWCKSFPGFYLYIPSREHMPKKIRVLMDFLIEK 272


>gi|221200466|ref|ZP_03573508.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206146|ref|ZP_03579160.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221174158|gb|EEE06591.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221179807|gb|EEE12212.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 318

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 126/289 (43%), Gaps = 6/289 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
                 +GSF  AA QL ++ +++S+ ++GLE  +G++L  R  R L LTE+G    R  
Sbjct: 13  LVQAVDAGSFAAAARQLGVTSAAVSKNVAGLEKALGVRLMNRTTRTLKLTEEGEAFLRHA 72

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
                 L+     +     +P+G++RI+T+   G N +   L   L  YP + +++  D+
Sbjct: 73  RIALETLDAAIDTVSARRAEPAGRVRISTSAAFGHNHVLPALPALLARYPALSVEVDFDD 132

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
           + IDI  D  D A+R    I  S+L+ R +  ++    A+P YL N   P +   L  H 
Sbjct: 133 RVIDIVRDGYDIAVR-GGNIPDSALVTRPICRLNTVLVASPDYLANHGVPETPDALHAHR 191

Query: 191 LITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV 249
           LI    L  +    +F         I     + L +++  S++Q      GIA +  ++ 
Sbjct: 192 LIARRFLSGQVAPWNFTGDDKSITTIDPSGKAMLTLSAPESLVQAACDSVGIAEVGVHLA 251

Query: 250 KD---NPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D   +  L  I+     P S+ +   YP       +++     +    
Sbjct: 252 WDRLRSGALKVILHRFHHPGSYEMVMQYPHRALVAPRVQVTVKHLLEAL 300


>gi|152985802|ref|YP_001348163.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960960|gb|ABR82985.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 307

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 75/307 (24%), Positives = 127/307 (41%), Gaps = 28/307 (9%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + L +F   A +GSF+  AE+L  + S++++ ++ LE E+G +LF R  R L LTE
Sbjct: 1   MDKLNALAMFVATAETGSFSRGAERLGKTPSALTKAVAHLEAELGARLFERTTRSLALTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        +    L T   E++    +  G+LR+A         LQ     FL  +P 
Sbjct: 61  AGQIYLEAARQSLETLRTAGQEIELLESELRGELRLAAPPSFAAAFLQQACASFLEAHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++ LD   +D+S    D  +R   PI    L+ R L    +   A+P YL     P 
Sbjct: 121 ISLRVDLDETFLDLSEGGYDLGLR-DGPIDLPGLVARPLAPNQIVLCASPAYLARQPAPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYL---------SIM 232
             ++ ++H  + F          +     + + I +PR   L  ++Y            +
Sbjct: 180 GPEDFERHAWLVFQHPSLDQHFWWMERGGIRQRIDQPR-PRLASDNYDFLLAHLLAGLGL 238

Query: 233 QYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFT----VYFCYPEALKNTGKLKA 285
           Q+C         P + V        LVR++ D           ++  YP   +NT K++A
Sbjct: 239 QFC---------PQWSVAPLLAEGRLVRLLGDHHFDPGPFGPSIHVLYPGHRRNTRKVRA 289

Query: 286 FRNFIFL 292
           F   +  
Sbjct: 290 FLEHLRA 296


>gi|262373710|ref|ZP_06066988.1| transcriptional regulator [Acinetobacter junii SH205]
 gi|262311463|gb|EEY92549.1| transcriptional regulator [Acinetobacter junii SH205]
          Length = 308

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 130/299 (43%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T
Sbjct: 1   MN-SFDDYYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G + +    +V  ++E  +  L +   +P G ++I+    +    ++  L +FL  YP
Sbjct: 60  ELGQEFYEECCKVITQVECAENVLLKQKSEPQGLVKISCPPLMMHFQIRKILNQFLKTYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            ++I L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R 
Sbjct: 120 KVEISLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RS 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                +L  +  I+ G      +  F    T    +  P    ++ N    +      G 
Sbjct: 179 IKHFSDLKDYPSISLGTQKANYIWHFCNTRT-GETMDVPYQPRIKSNDLAGVYYAVADGL 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA LP   V+ +     L+ +M +  +   T+   Y         ++     +    R
Sbjct: 238 GIADLPFLTVESDIRKGKLIHLMPEWKSNIGTLQLVYVSRKGQRLVVECLIETLIEHLR 296


>gi|330901281|gb|EGH32700.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 307

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + +S +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDMSAAVASAALKRIERQLGTRLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LE  +  L  S  +  G L+++   DLG+N+L   L EF   +P + +
Sbjct: 64  GFLEYARAALGSLEEGRRLLASSQDRCEGVLQLSAPSDLGRNVLLPWLDEFQQQHPQLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRK-LVTIHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSL+    L        AAP YL+   EP  +
Sbjct: 124 RLLLGDRIADLFPQPVDVALRYGEP-EDSSLVALPVLPDNRRVLCAAPSYLQRHGEPHQV 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +HN + +  ++   + D   L    R I          +    + ++ V G G+A 
Sbjct: 183 EQLAQHNCLLY--MLGDRVHDRWTLNDGKREISLTVSGNRFSDDADVVRRWAVAGEGVAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V  +    +L  +M D+I     +        + +  +      +  + + 
Sbjct: 241 KSWLDVAADVRAGHLKVLMPDLIGERAPLNLLCAHRAQLSKPVILLLEMLRSRCKQ 296


>gi|206563932|ref|YP_002234695.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039972|emb|CAR55950.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 311

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 120/297 (40%), Gaps = 6/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D + +RVF  V   GSF  AA  L L  S++SR ++ LE+ +G++L  R  R L +TE
Sbjct: 4   KLDLNAVRVFVTVVDEGSFAGAARMLALPGSNVSRHVAQLESRLGVRLLERSTRHLRMTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  LH     +   L   + EL     +  G L++    ++G  +L   + EF   +P 
Sbjct: 64  AGRLLHERARPMLDALTQAECELTSQQTELRGVLKLCVPGEIGPRMLGPIVAEFASRHPR 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I        +    D  D +I + R  +  S+ + R L ++     AAP  +     P
Sbjct: 124 VEIDCDTSLAGMSTLRDDIDLSIIVNRGKLDDSAFVVRPLASLPSVVVAAPSLVARVGMP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +   IT   L     + + +     R    P  S  +VNS        V G G
Sbjct: 184 GLTEQLRQLPCIT--TLSTLKGQPWQFADRDGRIHKIPVASRYRVNSGEMAGLAAVNGIG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            A+L +           LVR+  ++      ++  Y        K++A    +  + 
Sbjct: 242 FAILVERACAVELAEGRLVRVPLEMAPAPLQLHAAYASRNSVNAKIRALLQLMQERL 298


>gi|116252967|ref|YP_768805.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257615|emb|CAK08712.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 316

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 125/301 (41%), Gaps = 21/301 (6%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  V  +GSF+ AA  L ++Q ++SRQ++ LE     +L +R   GL+LT 
Sbjct: 10  MDIVSALRTFQRVVETGSFSAAAHDLDVTQPAVSRQVAALEGHFNTRLLHRTTSGLSLTA 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G ++  +   +   +E             SGK+R++    LG   L   L + L  +P 
Sbjct: 70  EGERMLPMALRILEAVEELGDAAGSDGAMASGKVRLSVPAPLGLY-LSERLGDLLAAHPK 128

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++LI   +  D+  +  D  +RL + +  SSL+ R++        A+P YL     P 
Sbjct: 129 LAVELIFREQSSDMIEERLDLEVRLGQ-VADSSLVCRRIGWTTAFLIASPAYLARRAAPR 187

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQ------- 233
           + +E+  H  + +     +  E   W  +        RIS  L   + ++I +       
Sbjct: 188 APKEIKDHECLCYN----RAGEANTWSFSNGSEDISVRISPRLTACNAVAIHRAALAGAG 243

Query: 234 -YCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              +    I  +PD        LV +M+D       V   YP       ++K   +F+  
Sbjct: 244 LAVLSH--IIAMPDIAA---GRLVPVMKDFQPSRLPVTVVYPSRRNMPLRVKTVLDFLTE 298

Query: 293 K 293
            
Sbjct: 299 A 299


>gi|330990581|ref|ZP_08314538.1| Putative HTH-type transcriptional regulator ycaN [Gluconacetobacter
           sp. SXCC-1]
 gi|329762283|gb|EGG78770.1| Putative HTH-type transcriptional regulator ycaN [Gluconacetobacter
           sp. SXCC-1]
          Length = 302

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 130/299 (43%), Gaps = 7/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSF+ D L  F  VAR+G F  AA     S S +S  +  LE  +G +L +R  R ++LT
Sbjct: 1   MSFELDDLSAFVAVARAGGFREAARVSGFSASGLSEALRRLEARLGTRLLHRSTRSISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E GS+L    S    ++      +   + +P+G +R+    ++ + +L G L  FL+ +P
Sbjct: 61  ETGSRLFAGLSPALAEISAALDTVHAQTDQPAGTIRLNVPANVARTVLPGILSPFLIAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
            I++++ +++  +DI    AD  IR  + ++   +I   +      + A AAP YL    
Sbjct: 121 QIRVEVTVEDSFVDILASGADAGIRYEERLEQD-MIAVPIGPRTQRVLAAAAPSYLSAKG 179

Query: 179 EPLSIQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P     L +H  +          M +F     V R      +     ++   ++   + 
Sbjct: 180 RPQHPSALLEHACLRLRFSSGAPAMWEFEKNGEVIRLDPPGPLLVQPGSACDLLVDTAIA 239

Query: 238 GSGIALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI  L  D++     +  L  ++ED   P       Y    +    L+AF +FI  +
Sbjct: 240 GLGIVCLFEDWLAPHIRSGALEVVLEDWAAPFSGPMLYYSGRRQLPPPLRAFVDFIRSR 298


>gi|226939161|ref|YP_002794232.1| Transcriptional regulator, LysR-family [Laribacter hongkongensis
           HLHK9]
 gi|226714085|gb|ACO73223.1| Transcriptional regulator, LysR-family [Laribacter hongkongensis
           HLHK9]
          Length = 314

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 122/295 (41%), Gaps = 7/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D +R F  VA + SFT AA+QL  +++++++ +S LE ++G +L  R  R ++ T +G
Sbjct: 15  TLDAMRAFVRVAEARSFTRAADQLGCAKATVTKLVSALEHQLGTRLLQRTTRYVSPTPEG 74

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R    +  +++     +     +  G++       L ++ L   L  F    P ++
Sbjct: 75  EIYLRHCQHLLPQVDAAAAAINPQRERLQGRIWCEVPSSLARSPLIRRLAAFREQAPQVE 134

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +     ++   +  +  DCAIR  K +  S  + R L    +   A P YL         
Sbjct: 135 LLFSCSDRKAGLVREGLDCAIRFGK-LPDSDYVARPLCPARIVLCATPRYLARHAPVTEP 193

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIA 242
            +L  H +I +   +P       W    +  +   P    +  +    +++  + G GI 
Sbjct: 194 DDLLAHPVIDY--FVPGSTAPEVWPLYSEHSLHHVPVQRAVAFDDDNLLLEAGLAGLGIF 251

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             P ++V     +  L R++       + ++   P     + +++AF N++  + 
Sbjct: 252 QSPLHLVAPYIASGQLERVLPAWHLRDWPMHLLTPRPQFLSPRVRAFCNWVMTEL 306


>gi|157375721|ref|YP_001474321.1| carbonate dehydratase [Shewanella sediminis HAW-EB3]
 gi|157318095|gb|ABV37193.1| Carbonate dehydratase [Shewanella sediminis HAW-EB3]
          Length = 296

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 117/294 (39%), Gaps = 6/294 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      L VF  +A   S   AA +L +  S++S Q+  LE ++G  LF R  R ++LT
Sbjct: 1   MRLPLSTLEVFNAIACQKSLRGAARELGVKPSTVSHQLKKLEEQLGTALFIRTTRAISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L R T   + +L       Q +     G L++A        L++  L  F   YP
Sbjct: 61  EAGRALARSTGPAFEQLGEGLYSAQTAGHDERGSLKLAIPEFAYFLLVRNKLATFQKNYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I+++L + +   DI  +      RL   I    +       +     A+P YL+    P
Sbjct: 121 EIEVELSMTDAMSDILDEGLHAGFRLGGLIAQDMVAVNLSDPLKTAVVASPEYLETHGVP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            + ++L  HN + +    P   +   W+ T  D          L  NS  + +   + G 
Sbjct: 181 CNPRDLLNHNCLRY--RFPSSGQLAPWIFTGPDNAYPVEVRGNLIANSSPATIDLALQGL 238

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+         D   +  LV ++ +   P  ++   +P+  +    L+ F   +
Sbjct: 239 GLTFTFRDYCTDALADGKLVEVLTEHQAPLPSMNIYFPKEYRAMMPLRLFIEHL 292


>gi|114568899|ref|YP_755579.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114339361|gb|ABI64641.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 311

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 121/296 (40%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SF  AA++L ++  +IS+QI  LE  VG  LF R  RGL LTE G 
Sbjct: 10  LNALRAFEAAARLESFARAADELAVTPGAISQQIRQLEEHVGTPLFVRQGRGLILTEAGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               +TSE +  LE     +++   + +  L ++         L   L  F    P +++
Sbjct: 70  AAAGITSEAFETLERAVSLMRQPVHRRA--LTVSVAPSFAGKWLAPRLFRFQEEVPGVEV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++ +D++   AD  IR   P    +L +  L+   +    +P  L++       Q
Sbjct: 128 WIAATSERVDLAAGAADLGIRYG-PGGDMTLNEETLLPEEVLPVCSPDLLRDGPALNRAQ 186

Query: 185 ELDKHNLITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L    L+       +    D+          G      ++ N    ++   V G G+AL
Sbjct: 187 DLHGQTLLHDASPETEVDGADWASWLKARGARGVDVSGGVRFNQSALVIDAAVAGRGVAL 246

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
               +V+++     LV +  D  TP     +         +   +AF  ++  +AR
Sbjct: 247 AKRALVQNDLASGRLVALFPDGTTPVRSAYHIVTARNRPLSPDARAFIAWLKAEAR 302


>gi|152969814|ref|YP_001334923.1| transcriptional regulator LysR [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954663|gb|ABR76693.1| putative bacterial regulatory protein, LysR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 298

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 111/292 (38%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AA +L ++ S++S+QI+ LE  + + LF R  R L LT  G 
Sbjct: 6   LNALRCFEAAARLLSLKLAASELCVTPSAVSQQIARLEETLNVPLFIRTPRRLQLTAVGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R     +H++      LQ        K+ I+ T       L   L +F   YP I+I
Sbjct: 66  IYLRAIQPAFHQIAAATQRLQVPPGPE--KVAISCTSGFAIQWLLPRLADFEQRYPQIEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+   N+ +D+  +  D A+R         L   +L+   +    +P  +   R      
Sbjct: 124 QIGTTNRRVDLLSEGIDFAVRHGVGGW-PELQAYRLLDDDLMPVCSPQLIAPRRTLTDAS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+         +    W   V       R   +  +S   + +    G G+ALL
Sbjct: 183 DLLQYPLLHDEHREDWAL----WCEAVGLAPHFARRGPVFTDSN-GVTEAAFAGMGMALL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               +        LV  +   I      +  Y E        + FR+++  +
Sbjct: 238 RRSFIAPALTQGRLVNPLAQHIACPLAYHLVYHETALLAPANRCFRDWLLGQ 289


>gi|254248651|ref|ZP_04941971.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875152|gb|EAY65142.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 302

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 114/290 (39%), Gaps = 6/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R++  V   G+ + AA  L + Q ++S +I  LE  +G +L  R AR L  TE+G   +
Sbjct: 7   MRIYVRVVERGTMSGAARDLDMGQPAVSERIEKLEKHLGTRLLMRSARTLACTEEGRIFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +    E     + +++    G +R+A     G+ +L G L +    YP + I L+
Sbjct: 67  ERSKALLEAAELAVASVSKTAHALDGTIRLAAPQCFGEVVLPGVLMQIRTAYPKLHIDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D   +  D +IR+ + +     I   L  +     AAP YL+      +  +L 
Sbjct: 127 LNDDIVDPVTEGVDISIRVGQ-LGDGGFIAYALGAVGRVLVAAPSYLERHGPIDTKADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I    +     E                 + +  + +  +      G GI ++   
Sbjct: 186 NHPFIRVKGVF--ANEQVPLRRDGGAVEYARIRTVMTASHWRPMFDTIAAGGGIGVVQHP 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              D   +  LVR++     P F +            +++A  + +  + 
Sbjct: 244 ACADALAHGRLVRLLPHYDVPDFALNVLVHAQRPLPPRVRAVVDLLKSEL 293


>gi|330958603|gb|EGH58863.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 310

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 123/300 (41%), Gaps = 13/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR---HARGLTLTE 61
            + LR F   AR  SF+ AA +L+++ +++ +Q+  LE+ +GI LF R       L LT+
Sbjct: 7   LNALRAFEAAARHQSFSAAAAELNVTPAAVGQQVRSLESWLGIALFMRASSGTARLMLTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
                     E + +L      L++SSV     L +  +       L   ++ F   YP 
Sbjct: 67  VARTALPDIREGFDRLSIGLTRLKDSSVHAG--LTVTVSPAFASKWLLPRIERFQQDYPG 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L  + + +D  ++  D  +R     +   L    L+   M    AP Y +  +  L
Sbjct: 125 LDVLLDTNARSVDFQVERVDVGVRYGAG-KWPGLTAVHLMDEVMFPVCAPDYARLKKGKL 183

Query: 182 SIQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           + + L+   LI        +    +                 L++N+  S++Q  + G G
Sbjct: 184 TAKALEVSTLIHDLSMANDRDYPTWRMWLDASGFTHVNADHGLRINNSASVLQAAIDGQG 243

Query: 241 IALLPDYIVKDN---PNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +AL    +VKD+     LVR   D       +   Y  Y        K++AFRN++  +A
Sbjct: 244 LALARSVMVKDDLAAGRLVRPFADKGVDCPLTQAYYIVYRPECNELPKVEAFRNWLLAEA 303


>gi|325274342|ref|ZP_08140442.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324100524|gb|EGB98270.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 273

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 114/274 (41%), Gaps = 9/274 (3%)

Query: 28  HLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQES 87
                ++SR +S LE ++G  L  R  R + LTE+G         +  +++  +  L  +
Sbjct: 3   GQPPPAVSRTLSRLEGKLGTTLVNRTTRRMDLTEEGRFFLDRARLILQQMDDMEERLSMN 62

Query: 88  SVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLR 147
              P+G+LRI        + +   + EF   YP I+++L  D+  ID+     D AIR+ 
Sbjct: 63  RQTPTGRLRINAAAPFMLHAIVPWIGEFRRQYPGIELELNTDDLIIDLLEHSTDVAIRIG 122

Query: 148 KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNW 207
           + +  SSL  R L    +   A+P YL     P  +++L  H L+ F    P  +  +  
Sbjct: 123 E-LADSSLHARNLGCSPVQVLASPAYLAQHGTPQRVEDLANHCLLGFSQ--PDSLNQWPL 179

Query: 208 LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVIT 264
                   G      L  +S  ++ Q  + G GI  L  ++  ++     L  ++ +   
Sbjct: 180 RHAQGDRFGI--RPALLASSGETLRQLALAGEGIVSLSHFMTHEDIRSGRLQVLLGEANN 237

Query: 265 PSF-TVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                ++  Y    +   +++ F +FI  K   +
Sbjct: 238 GYRQPIHAVYYRNTQLALRIQCFLDFIQRKLAMY 271


>gi|323497111|ref|ZP_08102131.1| putative transcription regulator [Vibrio sinaloensis DSM 21326]
 gi|323317686|gb|EGA70677.1| putative transcription regulator [Vibrio sinaloensis DSM 21326]
          Length = 312

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 136/296 (45%), Gaps = 15/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            DK+  F  V RSGSF  A+ Q  +S ++ SR +  LE  + ++L  R  R L  T+ G 
Sbjct: 13  LDKIVFFCAVVRSGSFREASLQQGISPAAGSRWVKELEASLSVELIKRSTRQLVPTQAGQ 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L +  S +   + +   E+Q  + +  G++RI++T    +  L   + E++ ++P +  
Sbjct: 73  LLFQRFSPMLPDINSLCEEVQNLADEQLGEIRISSTPLFARQYLTKIVAEYIKMHPKVNF 132

Query: 125 QLILDNKDIDISMDYADCAIRL-----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++ ++  + D      D A R       +P   S L++++++   ++  A+P Y++   E
Sbjct: 133 RIFIEAGEFDPM--NIDFAFRASASYEGEPQSDSLLVRKRMLREPLYLCASPIYIEQHGE 190

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P++ Q+L +H  +         ++   W    D  I    I   L+ ++   ++   +  
Sbjct: 191 PVNPQQLKQHRCL----YARTLLDGTRWCFERDGNIDIVTIQDTLECDNSEMLLDLALAD 246

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +G+A LP  +V D   +  L+++M D    SF V   Y        +   F+ F+ 
Sbjct: 247 AGVAYLPHSLVADQFESGRLLQVMADYQCASFDVNMFYRPRTPMPERCSGFKRFLL 302


>gi|229521500|ref|ZP_04410919.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
 gi|229341598|gb|EEO06601.1| transcriptional regulator LysR family [Vibrio cholerae TM 11079-80]
          Length = 316

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 134/298 (44%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +    D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R+++ L LT
Sbjct: 10  LRMKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRNSKELVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L    +E++ ++E  Q E++++     G++ I+  +   ++ L     EF  L+P
Sbjct: 70  KEGEQLFHSYAELFAQIERKQEEVEQAKRDYRGEIAISAPVLPLRHQLTPLALEFAELHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ +++ + +     S    D A+R   P   S  + RKL        A+          
Sbjct: 130 NVTLRMQVGSGLDYFSQRDLDIALRFG-PQPESDWVARKLARNPSVLCASAELAAKLSTI 188

Query: 181 ----LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                  ++L +H L++    +P          +V + +     + L  +   +I+Q  +
Sbjct: 189 TPALAHPKQLKEHPLLSLNHKLPWIFHHH----SVAQKVQFIPTARLCSDELDTIVQATL 244

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G GIA LP  +++    +  L+ ++         VY  +P+      + +A  ++I 
Sbjct: 245 QGMGIARLPRGLMEPLLRSGQLIELLPKWEIEGADVYLLHPQRRFLPERTQALIDYIM 302


>gi|58040796|ref|YP_192760.1| transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58003210|gb|AAW62104.1| Transcriptional regulator [Gluconobacter oxydans 621H]
          Length = 303

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 7/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSF+ D L  F  VAR+G F  AA    LS S +S  +  LET +G +L +R  R ++LT
Sbjct: 1   MSFELDDLSAFVAVARAGGFREAARVSGLSASGLSEALRRLETRLGTRLLHRSTRSISLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L    S    ++      +   + +P+G + +    ++ + +L G L  FL+ +P
Sbjct: 61  ETGARLFERLSPALTEISAALDTVHAQTYQPAGTIHLNVPANVARTVLPGILSPFLIAHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY--AAPHYLKNCR 178
            I++ + +++  +DI    AD  IR  + ++   +I   +          AAP YL    
Sbjct: 121 QIRVDVTVEDSFVDILASGADAGIRYEERLEQD-MIAIPIGPATQRVLTAAAPSYLSARG 179

Query: 179 EPLSIQELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            P    EL +H  +          M +F     V R      +     ++   +++  + 
Sbjct: 180 RPQHSSELLEHACLRLRFAGGAPAMWEFEKDEEVIRLDPPGPLLVQPGSACDLLVETALS 239

Query: 238 GSGIALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  L  D++     +  L  +++D  TP       Y    +    L+AF +FI
Sbjct: 240 GLGIVCLFEDWLAPHIRSGALEVVLDDWATPFSGPMLYYSGRRQLPPPLRAFIDFI 295


>gi|126457789|ref|YP_001076608.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167850772|ref|ZP_02476280.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167899377|ref|ZP_02486778.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167923891|ref|ZP_02510982.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
 gi|242311693|ref|ZP_04810710.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254193626|ref|ZP_04900058.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254301036|ref|ZP_04968480.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|126231557|gb|ABN94970.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|157811243|gb|EDO88413.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|169650377|gb|EDS83070.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|242134932|gb|EES21335.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 315

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 118/288 (40%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    +              G +RI+ +  +G  +L   +      +P + +
Sbjct: 67  ALRAHAEAMESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHPALTV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+  D+    AD A+R+ +P Q+  LI R +  I +  +A   YL     P    
Sbjct: 127 ELALTNRVQDLLRREADIAVRMTRPGQTQ-LIARHIGGIELGLHAHRDYLARRGTPRDAG 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H LI          +        DR         L+ +S L+ +     G+GI   
Sbjct: 186 ELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----ALRTDSDLAQLALIRCGAGIGAC 240

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + K +P LVR++         ++    E L+ + + +A  + +  
Sbjct: 241 QAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAE 288


>gi|197103574|ref|YP_002128951.1| transcriptional regulator, LysR family [Phenylobacterium zucineum
           HLK1]
 gi|196476994|gb|ACG76522.1| transcriptional regulator, LysR family [Phenylobacterium zucineum
           HLK1]
          Length = 297

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD L+  + V  +GSF+ AA    L+Q ++ R I  LE ++G  LF R  RGL  T+  
Sbjct: 6   DWDLLQSLHAVLEAGSFSAAARLRRLTQPTLGRHIDQLERQLGAPLFLRSPRGLQATDLA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    +++         +   ++    G +R+A +  +G  +L   L  F   +P I 
Sbjct: 66  LTLKPHLADMAAAAGAAGRDAAGAADHAGGVVRVAASEIMGAEVLPPILARFREAHPRID 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ + N+  D+S   AD A+R+ +P Q++ ++ +K+  I    YA P YL+    P  +
Sbjct: 126 VEIAVSNRVEDLSRRDADIAVRMARPTQNA-IVAKKVGDIGFGFYATPRYLERHGVPDDL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H LI +    P      +    + RPI    I  L+ ++ ++ +     G GI +
Sbjct: 185 DALGAHTLIGYDRSPPPKGIGVD----IGRPITRD-IFALRTDNDVAQLALLKAGFGIGV 239

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               I +    LV ++         ++ C  EAL+   +++A  + +  +   +
Sbjct: 240 CQHQIGRRAG-LVHVLPGAFQFRLEIWICMHEALRGAPRMRAMFDHLAAELAGY 292


>gi|163734345|ref|ZP_02141785.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
 gi|161392353|gb|EDQ16682.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
          Length = 304

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +SFDW+++R F   A  GSF+ AA  L  +Q +I RQI  LE  +G+ L  R  RGLTLT
Sbjct: 6   ISFDWNQVRAFLATAEEGSFSGAARVLKTTQPTIGRQIGALEEALGVTLVERSVRGLTLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   T  +        +     S + SG++ +  T  L   +L G LK       
Sbjct: 66  EAGRDLIDHTRTMGEAATLISMVADGKSQEVSGEVTVTGTDLLSAAILPGVLKPLRQTAS 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++++   ++  +++   AD AIR  +P Q   LI R L     + YAA  YL     P
Sbjct: 126 GIRVRIHASSEMQNLTQREADIAIRHVRPDQ-PDLIARHLGDFRANLYAATDYLDRAGRP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVL 237
            + +++   + +   D           L      +G P  +    +   S +   +    
Sbjct: 185 HTPRDVATLDFVGNADPER--------LMAPLHNMGVPVRAESFVMSSESGVVAWELVKA 236

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+++ P+ + +  P L +++ D  +  F ++      L+ + +++   + +
Sbjct: 237 GYGVSMQPETLGEAEPGLEKVLSDFPSLEFPIWLVTHRELQTSRRIRIVFDLL 289


>gi|120612951|ref|YP_972629.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120591415|gb|ABM34855.1| transcriptional regulator, LysR family [Acidovorax citrulli
           AAC00-1]
          Length = 328

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 132/298 (44%), Gaps = 10/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  SG+ + AA +L ++++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDLPSLTLLVEIIDSGNLSQAARKLRMTRANVSYHLTKLEKAVGVQLVQRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + ++L   Q  +        G++ I+     GQ ++   L EF  +YP I
Sbjct: 61  GLRLYEHGRTIRNELMAAQEAVTTLGQGLQGRVGISVPSGYGQIVMGDWLIEFKRMYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  ++  D  D AIR+ +     SL+ R L  +   A A+  Y +    P +
Sbjct: 121 VLDVLFENRADNL-RDEVDIAIRVVQE-PPLSLVARSLGNVRYLACASADYARRHGLPRT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L    +IT G    +        A     + EP    L    +  + Q  + G G+ 
Sbjct: 179 LHALRAGPVITAGVTGRQLRLSAYQGAERHEVLLEP---TLISEHFPFLRQGILAGLGVG 235

Query: 243 LLPDYIVKDNPNLVRI---MEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+PDY+V+D      +   +++     F   +Y  Y      T  ++   +F+  KA+
Sbjct: 236 LVPDYVVQDKLATGEVLTTLDEYRLSIFGTHMYLLYLPNRHQTRAVRTCIDFLLDKAQ 293


>gi|107026701|ref|YP_624212.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692108|ref|YP_837641.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105896075|gb|ABF79239.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650108|gb|ABK10748.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 302

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 114/290 (39%), Gaps = 6/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R++  V   G+ + AA  L + Q ++S +I  LE  +G +L  R AR L  TE+G   +
Sbjct: 7   MRIYVRVVERGTMSGAARDLDMGQPAVSERIEKLEKHLGTRLLMRSARTLACTEEGRIFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +    E     + +++    G +R+A     G+ +L G L +    YP + I L+
Sbjct: 67  ERSKALLEAAELAVASVSKTAHALDGTIRLAAPQCFGEVVLPGVLMQIRTAYPKLHIDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D   +  D +IR+ + +     +   L  +     AAP YL+      +  +L 
Sbjct: 127 LNDDIVDPVTEGVDISIRVGQ-LGDGGFVAYALGAVGRMLVAAPSYLERHGPIDTKADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I    +     E                 + +  + +  +      G GI ++   
Sbjct: 186 NHPFIRVKGVF--ANEQVPLRHDGGAVEYARIRTVMTASHWRPMFDTIAAGGGIGVVQHP 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              D   +  LVR++     P F +            +++A  + +  + 
Sbjct: 244 ACADALAHGRLVRLLPHYDVPDFALNVLVHAQRPLPPRVRAVVDLLKSEL 293


>gi|282862630|ref|ZP_06271691.1| transcriptional regulator, LysR family [Streptomyces sp. ACTE]
 gi|282562316|gb|EFB67857.1| transcriptional regulator, LysR family [Streptomyces sp. ACTE]
          Length = 303

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 124/291 (42%), Gaps = 16/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  GSF+ AA+QL  S S +SR ++ LE ++G++L  R AR ++LTE G +  
Sbjct: 7   MRSFVTVAHIGSFSGAAKQLSSSGSLVSRHVAELERQIGVRLVNRTARSVSLTEPGRRYA 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +  +++     L     +  G L I     +G   L   +  F   +P I ++  
Sbjct: 67  EFAARILDEIDAEDATLARRHDRAEGTLSIICPKWIGSLDLGDAIAAFSAAHPKIVVRFE 126

Query: 128 L---DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           L    ++  D      D A   R  ++ SS+  +K+ ++     A+  YL+         
Sbjct: 127 LGGMSDRTYDFLDSGFDIAFHTRD-LRDSSVRLKKVSSLPFVLCASKEYLERHGTLGHPN 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++  H+ +         + D  W         + + R      NSY+++ +  V G G+A
Sbjct: 186 DIAAHDCLVH-------VNDPVWRIGHGHASTLHKIRNVAFSSNSYIALQKAAVHGRGVA 238

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP     D+     L  ++ ++  P   +Y  Y        K+  F +F+
Sbjct: 239 LLPQRSAYDDLVSGALQVLLPELAVPDRPLYAIYGPGQDTPRKVTVFLDFL 289


>gi|254469617|ref|ZP_05083022.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211961452|gb|EEA96647.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 292

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 131/295 (44%), Gaps = 16/295 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   + LR F V AR GSFT AA +L ++Q+++S Q+  LE  +G  LF R  +GL LT+
Sbjct: 5   NIPLNALRAFEVAARQGSFTRAAIELRVTQAAVSHQLIALEELLGTTLFLRTPKGLVLTD 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+ LH V ++ + ++ +      +   +    L +          L   L +F   +P 
Sbjct: 65  EGTALHPVLTQSFDRIGSVLDRFLDGRYQE--TLNLGVVTTFATGYLIERLPDFQAKHPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L  +N  +DI+ +  D AIR  + +    L    L+T  +    +P   ++ + P 
Sbjct: 123 VNLRLFTNNNRVDIAKEGLDIAIRFGEGLW-PGLHAAPLLTTPLTPLCSPEIAQSLKNP- 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L    L        +  E   W      P   P+I     +S +++      G GI
Sbjct: 181 --QDLADQPL----FRSYRSDEWELWFQQAAAPC--PKIEGPVFDSSVAMADMVEAGLGI 232

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ALLP ++         L+R     IT +   +  + ++   T  L  F+N++  +
Sbjct: 233 ALLPYHMFARRLATGRLIRPFPTQIT-TGKYWLTHLKSKPATPALTLFKNWLLAQ 286


>gi|209551842|ref|YP_002283759.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537598|gb|ACI57533.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 297

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 68/303 (22%), Positives = 120/303 (39%), Gaps = 35/303 (11%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   V+   SF  AA++L ++ S+IS  IS LE  +G++L  R  R +  TE+G 
Sbjct: 6   LSQLAVLAAVSEHRSFRAAAKELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L         +++     ++++  KP+G LRI         LL   L +FL LYPDI +
Sbjct: 66  LLLERLRPALEEIDIALEAVRDTRAKPAGNLRITAPRFASDLLLAPRLGDFLNLYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  ++   DI  +  D  IRL + +++  +  +    +     A+P Y +   +P   +
Sbjct: 126 EIANEDGFTDIVKEGFDAGIRLEESLEADMIAVKFSPHLTTVIAASPEYFERYPKPEHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS----------------- 227
           +L  H  I            + W    D       +    V S                 
Sbjct: 186 DLVHHRCI---KRRFTNGSIYRWEFEKDGQELVVAVDGPLVVSEDRLALLAALNGAGLAY 242

Query: 228 -YLSIMQYCVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
            +   +   +               + +LVR++ED   P    +  YP   +    L+AF
Sbjct: 243 LFDMRVDAELA--------------SGSLVRVLEDWCAPYSGPFLYYPTRRQMRPALRAF 288

Query: 287 RNF 289
            +F
Sbjct: 289 IDF 291


>gi|152970043|ref|YP_001335152.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954892|gb|ABR76922.1| putative transcriptional regulator (LysR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 299

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 112/282 (39%), Gaps = 6/282 (2%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
           + GSF  AA+ L+LS  +++  I+ LE ++G++L  R  R L+LT  G +     + V +
Sbjct: 2   KHGSFRQAAKALNLSPPALTVAINHLEEKLGVRLLNRSTRSLSLTAVGEEFLNNITPVVN 61

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
                   L    + P G +++     +     Q     F    P++ ++L   ++ ++I
Sbjct: 62  DYRRVVDSLNYHRLTPEGVVKVNLPRIVIDLFFQDYFIAFKNACPNVTLELYATDRKVNI 121

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQELDKHNLITF 194
                D  IR  + +    +I       + +   A+P Y++   EP + Q L     I  
Sbjct: 122 IESGFDAGIRYSQDVPKE-MIAIPFGEKLSLIPVASPDYIREAGEPDTPQSLVNFRCIN- 179

Query: 195 GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN-- 252
                     + ++              L V++  +++Q    G GIA +   +V     
Sbjct: 180 RCFPGGEKYRWEFIGPSGELSEVAVKGDLVVDADSAMIQAAESGLGIAFVYQSLVTQQLS 239

Query: 253 -PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             +LV ++ D   P+      YP        L+AF  ++  +
Sbjct: 240 AGSLVHLLPDYRYPADHFCVYYPSRKHIPAPLRAFIAWVMAQ 281


>gi|293604354|ref|ZP_06686761.1| glycine cleavage system transcriptional regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292817231|gb|EFF76305.1| glycine cleavage system transcriptional regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 308

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 125/295 (42%), Gaps = 11/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L+ F V AR  SFT AA++L ++Q ++S+Q+  LE  VG++LF R  +GL LTE G
Sbjct: 7   SLTDLQAFEVAARHSSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLRIRQGLVLTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                       ++E   +EL     +  G L +      G   L   L  F+ L PDI 
Sbjct: 67  RSYLTKVQAGLGQIEAATVELIAHQGQG-GTLNLTCMPTFGARWLIPRLTAFMRLRPDIH 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +   +  D S    D A+R  + I   S     +V   +    +P  +     P S 
Sbjct: 126 VEFLPHRQGYDFSTPELDAAVRFGEGIWPGSG-ADYIVGREIVPVCSPRLIPG-GCP-SP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L  + L+     +    + F       R   E      + + Y  + Q    G G+AL
Sbjct: 183 EALLAYPLLHHTSALEGWRDWFEQAGCDSRRSLE----GARFDQYALLSQAAAAGFGVAL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +P  +++D   +  L   M+  I      Y CYPE   N   L+AFR ++   +R
Sbjct: 239 IPRCLIEDELRDGKLAVAMQLPIRARMGYYLCYPEQKANLPTLQAFRAWLMEVSR 293


>gi|288935997|ref|YP_003440056.1| LysR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288890706|gb|ADC59024.1| transcriptional regulator, LysR family [Klebsiella variicola At-22]
          Length = 311

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 117/300 (39%), Gaps = 17/300 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +   VA +G  + A  +L LS ++++ ++  +E     +LF+R  R +TLT  G 
Sbjct: 4   LEDMALLVAVAEAGGLSAAGRRLSLSPATMTARLKAMEERYQTRLFHRSTRAITLTRAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V  +    +  L +     SG +R++   D G+  L   + +F   +P++  
Sbjct: 64  DFYHAARRVLEEARHAESLLTQKEGVLSGNIRLSAPSDFGRQYLSPAIVDFSRRHPEVTF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            + L  +  D+  +  D +IR+   +  SSL  R +   H    A+  YL     P ++ 
Sbjct: 124 SVFLGERVEDLVANRLDMSIRVGN-LPDSSLAIRHIRPNHRVLVASEAYLATHGTPAALD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  +          E         +         +  +    + Q+ + G+GIA  
Sbjct: 183 ELHHHRCLALERHGVVMNEWR--FEEAGKERVVRVTPAMVCDDGALLRQWALSGAGIAGK 240

Query: 245 PDYIVK---DNPNLVRIMEDVITP-------SFTVYFCYPEALKNTGKLKA----FRNFI 290
             + VK   +   L  +  +  T           + F +P+      ++ A    F +++
Sbjct: 241 SWWDVKRDVEEGRLQVLFAERFTGFSPLDRKEVGLQFVFPQRKLQPPQVSAFMAFFIDWL 300


>gi|121594671|ref|YP_986567.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120606751|gb|ABM42491.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 288

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 130/295 (44%), Gaps = 14/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR F   AR  + T AAE+LH++Q+++S+ I  LE  VG  LF R  RGL LT
Sbjct: 1   MHLPLNALRAFEAAARHLNLTRAAEELHVTQTAVSQHIRNLEERVGKPLFRRLPRGLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L  V S+ + ++      L +   +P   L +          L   L+ F   +P
Sbjct: 61  DEGRQLVPVLSDSFARIGQALQRLAD--TRPREVLTVGVVGTFAVGWLLPRLRAFHESHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L+  N  +D++ +  DCAIR        +    +L+   +    AP      REP
Sbjct: 119 FVDLRLLTHNNRVDLAGEGLDCAIRFGDGAWHGT-DAERLMPAPLAPLCAPEVAARLREP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L    L+       +  E   W      P   P +     +S L++ +    G+G
Sbjct: 178 ---ADLGAEALL----RSYRADEWPAWFTAAGAPC--PVLRGAVFDSSLTLAEAAAQGAG 228

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +ALLP  + +      R+++     +     + C  ++   T  L+AFR+++  +
Sbjct: 229 VALLPVRMFERELRQGRLVQPFACTAALGDYWLCRLKSRAPTDALQAFRDWLLRE 283


>gi|33600195|ref|NP_887755.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33567793|emb|CAE31707.1| probable LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 305

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 124/297 (41%), Gaps = 8/297 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D  + +R F  +   GSFT AA+ L ++ +++S QI  LE  + I+L +R  R +  
Sbjct: 1   MALDRIEAMRAFCRIVELGSFTRAADSLGVASTTLSGQIQVLERLLDIRLLHRSTRKVHP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G   ++   +V   ++  +  +  S     G++ +     +G +L+   L  F   Y
Sbjct: 61  TNEGLAYYQRARKVIEDIDDLEASVSISRAVVKGRVAVEMPTPVGIHLVIPALHGFTERY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + +    + + +  +  DCAIR    I    LI R++  +     AAP YL     
Sbjct: 121 PHIHLDIGCSERVVGLMQEGIDCAIR-GGDIADQDLIARRVGQMRFCLCAAPAYLDAHPA 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLG 238
                +L +H  + F    P   + F       R          +  N+  ++      G
Sbjct: 180 ITHPAQLARHRHLGF--RFPGTGKRFVATLRKQRDSHPLDHPPHVYFNNGTAVTAGAAAG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GIA LP   V+   +   L  I+ D    S  +   YP+  + + +++ F  ++  
Sbjct: 238 LGIAALPRAEVRHLLEAGALREILPDWTLTSMPMSVVYPQTHQLSARVQVFVQWVAE 294


>gi|116049070|ref|YP_792128.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390492|ref|ZP_06879967.1| transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|115584291|gb|ABJ10306.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 291

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA  LH+ Q+++ R+++ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDTRVFLALCREHTLRGAARALHIDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G     +  ++           +    + SG++R++TT  L  + +   L    L +PDI
Sbjct: 61  GEAAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLEHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L   +  +D+     D AIR  +P ++  LI RKL +  M  +A+  YL+    P+ 
Sbjct: 121 RVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNGVPVP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +    H+L+ +        E    L     PI + R+  + VNS + + Q    G G+ 
Sbjct: 180 GERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARGLGLC 234

Query: 243 LLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP Y+ + +  LVR+         + V+    + L++T +++A    +     +
Sbjct: 235 ELPLYMGERDG-LVRVWPQRERRRPYEVWMVTHKDLRHTARVRAVIERLVEAFAE 288


>gi|332307271|ref|YP_004435122.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174600|gb|AEE23854.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 294

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 119/292 (40%), Gaps = 8/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + VF  V   G+F  AA +L ++ S +S  +S LE  +G+ LFYR  R L LT +G 
Sbjct: 5   LRHMAVFVKVVDEGAFRAAARELGVAPSRVSETVSDLEQYLGVTLFYRTTRKLFLTNEGQ 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +    E    EL   +    G+L+++    L  + L   + EF   YP + +
Sbjct: 65  RFYAHVVNITKSAELGVNELNSRTQDLIGELKVSLPAFLASSALSSAIAEFAHQYPKVSL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +  +DI  +  D  IR   P Q SS++ RKL        A   Y+          
Sbjct: 125 HINYTDTKVDILKEGLDMCIRAGWP-QDSSMMSRKLGESRRFLVAGKAYVDARPLAKHPS 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L   + + F            +++           + +++NS  +++ +     G+ +L
Sbjct: 184 DLADWDWVHFSMRNTTT----EFVSKKGDVASVTEKTRIKLNSAGALLHFVEQNLGLTIL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P+++V     +  LV ++         +Y  +P+A +          F+  +
Sbjct: 240 PEHLVTQGIKSGELVHVLPQWEIKPLGIYALWPDASRRENLTLQLVRFLAER 291


>gi|167626950|ref|YP_001677450.1| LysR family transcriptional regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167596951|gb|ABZ86949.1| transcriptional regulator, LysR family [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 300

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 130/295 (44%), Gaps = 13/295 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   +   +FY +   GSFT+ A  L +++++IS  I  LE E+ + L  R  R L+LT 
Sbjct: 8   NIPINLFEIFYKLVTYGSFTNTANALGITKAAISHSIKQLEKELKVDLLIRTTRRLSLTH 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      + +++E  +   +    +PSG L+I T+    +++L G +KEF   +  
Sbjct: 68  EGKLLFEYCKTLQNEIENIRDLAESFHSEPSGTLKINTSSFFAKSVLIGLIKEFSKRFSK 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ ++ +  +      D  + +        +I RK+ T      A P YL++   P 
Sbjct: 128 VKIEVNIEERMPNFKTQETDIILGVNW-TPPEDIIARKIATTRYILCATPVYLQHNGIPS 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGS 239
           ++ +L  H  I               L  + +    P+    +   N+   I +  +   
Sbjct: 187 NLYDLANHKYIPHKSRTTA-------LVNIKKNNLNPQTLPFELSANNIEFIKECVLNDL 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GIA   +YIVKD   N  LV +++D       +Y  YP+      K+K F   + 
Sbjct: 240 GIAQFHEYIVKDEIQNGKLVELLKDEFLDQQDIYIYYPKNKFVQPKVKEFVKLVM 294


>gi|104779348|ref|YP_605846.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95108335|emb|CAK13029.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 298

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 113/292 (38%), Gaps = 8/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LRVF   AR   FT AA +L  +Q ++S+Q+  LE ++G +LF R  RG+ LTE
Sbjct: 7   DLSLDALRVFEAAARLRGFTAAAVELGTTQPAVSQQVKRLEAQLGTRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L     +    ++      Q S       L++AT        L   L+ F    P 
Sbjct: 67  AGQLLFEQVHQGLQAMDDGVA--QASGRGQREVLQVATDFAFAAFWLMPRLQRFHEANPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+             R L    +    +P  +    +PL
Sbjct: 125 VDVSLVTGERSQGMLRPDIDVAVLFGDGRFHQG-ESRWLFDEEVFPVCSPRLI--HGKPL 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S   L +  L+           D+  +         P    L+ ++Y  ++Q  + G G+
Sbjct: 182 SAVALQRLPLLHLKGEQASRWFDWAGVFRGLGVDSPPPSGQLRFDNYTLLIQAAIAGQGV 241

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+   ++V    +   L R ME  +  +   Y   P+  +    +  F +++
Sbjct: 242 AIGWAHLVDGLVEQGLLCRPMEGSLRSARGYYVVLPQRKRRGALIHRFVDWL 293


>gi|254252597|ref|ZP_04945915.1| regulatory protein LysR [Burkholderia dolosa AUO158]
 gi|124895206|gb|EAY69086.1| regulatory protein LysR [Burkholderia dolosa AUO158]
          Length = 356

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 116/276 (42%), Gaps = 7/276 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L +S++++S++I+ LE   G+ L  R  R + LT+ G  L   T + +  +      +
Sbjct: 75  QRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTDAGQTLVDSTRDAFESIGQHFARV 134

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E + +P G LR+   + LG+  +  +L +FL  +P + I+L L ++   ++ +  D AI
Sbjct: 135 KELAGEPRGLLRVTAPVALGRQQIVPHLPDFLRRHPGVNIELDLSDRLHSLTQEGFDLAI 194

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R       +  +  KL        A+  YL     P    EL  H+ + +          
Sbjct: 195 RHTTTAPQTH-VAWKLCDTRSLLVASRDYLDARGAPRHPAELVDHSCLCYLRDNEPTAWS 253

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F         +  P       N+  ++ +  + G GIALLPD+  + +     LV +++ 
Sbjct: 254 FEPHGRRRERVSVPVRGSFAANNSEAMREAALGGLGIALLPDFSARRDLDAGRLVALLDG 313

Query: 262 VITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
                     ++   P +      ++A    +  + 
Sbjct: 314 WRPSGAFGDHIFAIRPYSPVVPSAVRALVRHLRERL 349


>gi|158423230|ref|YP_001524522.1| regulatory protein [Azorhizobium caulinodans ORS 571]
 gi|158330119|dbj|BAF87604.1| regulatory protein [Azorhizobium caulinodans ORS 571]
          Length = 301

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 124/300 (41%), Gaps = 9/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D   L  F  VAR+  F  AA     S S++S  +  +E ++G++L +R  R +  T
Sbjct: 1   MSIDLSDLGAFMAVARARGFRDAARVSGASPSALSDAVRRVEAQLGVRLLHRTTRSVAPT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G++L         ++E     +     +P+G LR+   +   + +L   + +FL  YP
Sbjct: 61  EAGARLMERLGPALGEVEAALDVVNGFRDRPAGTLRLNVPVSAARLVLPSLVPDFLAAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI++++  ++  +D+     D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 DIRLEITAEDTFVDLLAAGCDAGIRYDERLEQD-MIAVPIGPRTQRFATAAAPAYLDRRG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--NSYLSIMQYCV 236
            P   ++L  H  +         M  + +    +    EP    L     +    ++  V
Sbjct: 180 RPAHPRDLLAHACL-LARFSSGAMMAWEFERDGEVVRVEPTGPLLVSVGAATELAVEAAV 238

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G+GI  L +  ++   D+  L  ++E         +  YP        L+AF +F+  +
Sbjct: 239 AGTGIIALFEDWLRPHLDSGALEPVLEAWWPRFSGPFLYYPGRRLVPAPLRAFVDFVRTR 298


>gi|152999003|ref|YP_001364684.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151363621|gb|ABS06621.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 303

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 123/293 (41%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L++   +A   S + A++++ ++ ++ S  +  LE ++G +LF R  R L LTE+G 
Sbjct: 4   LNDLQLALRIAALESLSAASKEIGMTPAAASAALQRLEKKLGCQLFARSTRRLQLTEEGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       LET    L E   +  G++R+A   D+G++ ++  L E +   P++ +
Sbjct: 64  IFLDSAKPALAILETASANLAEHRGELKGEVRLALPSDIGRSQIRAWLDELMDTAPELTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL   +   D+       A+R  + +  S+L +R+L        A+P YL     P ++ 
Sbjct: 124 QLYFGDHMTDLIDQNIHLALRYGQ-LDDSNLKRRQLAMTPRVLVASPTYLAQHGTPSTLN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H ++          +    L+    P+          N    I  + + G GIA  
Sbjct: 183 ELSQHAVLILNRGGEPWQKWK--LSHNGAPVEIEVRGQRFCNDGAVIRDWALSGRGIAYK 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               V  +     L  ++ D I P   +   Y +    + K++    F+  K 
Sbjct: 241 SWLDVAQDVTEGRLNLVLADKIAPPIPLQLVYLQTDYPSHKIRRTIEFLVEKL 293


>gi|104782335|ref|YP_608833.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95111322|emb|CAK16042.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 297

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 120/296 (40%), Gaps = 12/296 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LR+F VVAR  +F  AAE+L L+Q+++++QI GLE  + I+LF R  RGL LT+ G
Sbjct: 10  SLNALRMFEVVARHLNFRLAAEELGLTQAAVAQQIRGLEASLEIRLFERLPRGLGLTDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   +    ++     L+ +       L ++ T       L   L  F    P I 
Sbjct: 70  LAYSASVRDALAMIDEATRLLRPAPTH----LTVSVTPTFASKWLIPRLGAFAEHNPQID 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+  ++      D  D A+R  +P   + L    L+   + A A+P  +     P S 
Sbjct: 126 LRLLATDRLSHFHTDGVDLAVRQGQPPFGAGLNAELLLEQRIVAVASPQLIAEKGLPDSF 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L     +              + AT+    G+P    ++ N     ++  + G GI L
Sbjct: 186 EALQGFVWLH-----DAHGFWPQFTATLYPGHGQPSARHMRFNQTALAIEAAINGQGICL 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V  +     LV++    +      Y  +P   +    L+  + ++  +  D
Sbjct: 241 ASRAFVAADLAAGRLVQVFPQQMRLDKAFYLVWPRKPRQPATLQRVKAWLLQQVAD 296


>gi|89076502|ref|ZP_01162816.1| Hypothetical transcription regulator [Photobacterium sp. SKA34]
 gi|89047820|gb|EAR53416.1| Hypothetical transcription regulator [Photobacterium sp. SKA34]
          Length = 311

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 132/299 (44%), Gaps = 14/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            DK+  F  V R  S T AA+Q  +S S+ SR ++ LE  +G+ L  R  R +T T+ GS
Sbjct: 2   LDKIVFFLHVVRCNSVTDAAKQYGISPSAGSRWLTELEESMGVSLVKRTTRKITPTQAGS 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L +  S + +++     E+Q       G ++IA+T    +  L   + E++   P I  
Sbjct: 62  LLFKQFSHINNQITDAINEIQNLGNDDIGTIKIASTPLFAKYFLSKIIGEYISDNPTINF 121

Query: 125 QLILDNKDIDISMDYADCAIRL-----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +I    ++D   D  D AIR          + S L++R L +  + A  +P Y++   E
Sbjct: 122 VVIETAFEVDNVHD-VDFAIRANATYRGFQNKDSLLVKRSLFSEPLKACCSPSYIQRYGE 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLG 238
           P+   +L KH  +    L+        W+   +      +I   ++V+    +    + G
Sbjct: 181 PIIPHDLKKHLCLFATTLVGGN----KWIFEQNGEYNSVQIPRSVEVDDSEILKNIALAG 236

Query: 239 SGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIA LP  ++K +     LV ++ + ++  F +   Y        +   F++++  + 
Sbjct: 237 GGIAYLPYSLIKHDLQEDRLVTVLNNYVSSEFELSLYYKPRKYIPARCANFKDYLLKRV 295


>gi|312960390|ref|ZP_07774899.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311285275|gb|EFQ63847.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 291

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 131/287 (45%), Gaps = 8/287 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  V R  +   AA  L + Q+++ R+I+ LE  +   LF R + G  LT  
Sbjct: 1   MNWDDARVFLAVCRESTLRGAARVLGVDQATVGRRINALEKSLSATLFLRTSEGYALTAV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        ++       + ++Q    + +G +R++TT  L  + L   +      +PD+
Sbjct: 61  GEAALHSVEKMERSALDLERQIQGLDDRLTGTVRVSTTDSLAIDFLIPAIASLHGKHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL    + + ++   AD A+R  +P  +  LI R++    +  +AA  Y+     P  
Sbjct: 121 RVQLDASTQILSLAKREADIAVRNTRP-DNPDLIARRIACWPVGLFAAQAYIDRHGVPDP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D H+L+ +   +    +    L  V  P+G  RI    ++S L + +    G GI 
Sbjct: 180 GSLFDGHDLVVYQPYLQTHKD----LTLVSEPLGRGRI-VTALSSSLLVRRSIAAGLGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRN 288
            +P Y  + +  LVR+  + + P  + V+      L++T +++A  +
Sbjct: 235 EIPVYTGERDG-LVRLWPERVRPLPYDVWLVTHADLRHTARVRAVID 280


>gi|94314490|ref|YP_587699.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93358342|gb|ABF12430.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 332

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S DW    +F  V   G FT  AE   + +SS S  ++ LE ++G++LF R  R + +T+
Sbjct: 3   SIDWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLEGQLGVRLFERTTRRVRVTQ 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L+   + ++ +L     E    S + SG +RIAT  ++G   L   +   L L+P 
Sbjct: 63  RGQQLYDRVAPLFGELREISAEAASVSEEVSGTIRIATPYEVGSQHLSPTVNRLLKLHPS 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++QL +     D+     D A  +    +  SS   +++V I    YAAP  ++    P
Sbjct: 123 LRVQLDVSWDQPDLIRHGYDLAFVMTDTGLSDSSFASKRVVLIERAFYAAPSLIRERGLP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + Q+L      T G+L     E             EPRI     ++        V G G
Sbjct: 183 RTPQDLQGWP--TVGNLDDTRWEFLRDGVETFAMDVEPRIC---THNAEVRFNAAVDGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  L    V++      LVR++    +    VY   P        ++AF + +
Sbjct: 238 VTRLSPRFVREALVEGKLVRVLPGYASSPLKVYVLMPARKLMPASVRAFLDAL 290


>gi|85058140|ref|YP_453842.1| putative DNA-binding transcriptional regulator [Sodalis
           glossinidius str. 'morsitans']
 gi|84778660|dbj|BAE73437.1| putative transcriptional regulator [Sodalis glossinidius str.
           'morsitans']
          Length = 310

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 119/280 (42%), Gaps = 7/280 (2%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           V  + SFT AA +L +S SS+S+ ++ LE E+ +KL     R + LTE G   ++    +
Sbjct: 15  VVEANSFTSAARRLQMSISSVSQTVAKLENELQVKLLNHSTRSIGLTEAGKIYYQGCRRM 74

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
             + +    +L   +  P G LRI ++  L  N+L       L  YP + + L+      
Sbjct: 75  LQEFKEVYEQLFAFNNTPIGTLRIGSSSMLAHNVLASITATMLKEYPGLSVNLVTGIPAP 134

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
           D+  D  D  +R+   +Q S L  R++  + M   AA  YL     P    ++   + + 
Sbjct: 135 DLIADGLDLVVRV-DTLQDSGLFSRRVGIMPMVVCAAKSYLAQWCTPEKPGDIANFSWLE 193

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN- 252
           + D+ P    +F  +      +          N   +++++ + G+GI  +P   V D  
Sbjct: 194 Y-DVRPDS--EFELMTPEGSTLHLSPADRFVTNDSQTLIRWLIAGAGICYVPIMWVLDEI 250

Query: 253 --PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              N+  +     +    VY  Y    K   K++   N++
Sbjct: 251 RRGNVEILFSRYHSDPRPVYAVYTTRDKLPLKVQVCINYL 290


>gi|89069333|ref|ZP_01156692.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89045100|gb|EAR51171.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 295

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 123/291 (42%), Gaps = 6/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +FDW++ R F V A  GS + AA  L L+Q ++ RQ+  LE E+G+ LF R  RGL LT 
Sbjct: 7   TFDWNRARAFLVTAEEGSLSAAARALKLTQPTLGRQVEALEAELGVALFERTGRGLRLTA 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      +        +     +    G++ I+ +      LL   L       P 
Sbjct: 67  AGHALLDHARLMGDGARALSLAAWGQTEALEGEVAISASDADASYLLPPILARLHAAEPG 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I++++ N   D+S   AD A+R  +P  +S LI RKL       YAAP YL+    P 
Sbjct: 127 IRIEVVVSNDLSDLSRREADIAVRNVRP-TASDLIARKLRDATARLYAAPAYLERIGRPD 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +     + I     I       + LA     +GE      +  ++  + +    G GI
Sbjct: 186 RPEGFADADFI----EIDGRGSLRSLLAAQGFALGEANFP-YRCRNFAVMWEMVRRGMGI 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +L D I   +P + R        +F V+      +  + +L+   + +  
Sbjct: 241 GILDDRIGDPDPAVERAAPFFAPVAFPVWLVTHRDIARSRRLRVVFDALVE 291


>gi|15596335|ref|NP_249829.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100591|ref|ZP_01364509.1| hypothetical protein PaerPA_01001616 [Pseudomonas aeruginosa PACS2]
 gi|218892896|ref|YP_002441765.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234272|ref|ZP_04927595.1| hypothetical protein PACG_00110 [Pseudomonas aeruginosa C3719]
 gi|9947058|gb|AAG04527.1|AE004543_11 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126166203|gb|EAZ51714.1| hypothetical protein PACG_00110 [Pseudomonas aeruginosa C3719]
 gi|218773124|emb|CAW28936.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 291

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA  LH+ Q+++ R+++ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDTRVFLALCREHTLRGAARALHVDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G     +  ++           +    + SG++R++TT  L  + +   L    L +PDI
Sbjct: 61  GEAAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLEHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L   +  +D+     D AIR  +P ++  LI RKL +  M  +A+  YL+    P+ 
Sbjct: 121 RVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNGVPVP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +    H+L+ +        E    L     PI + R+  + VNS + + Q    G G+ 
Sbjct: 180 GERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARGLGLC 234

Query: 243 LLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP Y+ + +  LVR+         + V+    + L++T +++A    +     +
Sbjct: 235 ELPLYMGERDG-LVRVWPQRERRRPYEVWMVTHKDLRHTARVRAVIERLVEAFAE 288


>gi|24374966|ref|NP_719009.1| LysR family transcriptional regulator [Shewanella oneidensis MR-1]
 gi|24349690|gb|AAN56453.1|AE015782_5 transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
          Length = 299

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 130/300 (43%), Gaps = 20/300 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  +  +GSF+ AA+ L +  +++SR+++ LE ++  +LF R  R L LTE+G
Sbjct: 8   ELQLIYLFVHLVNAGSFSQAAKDLDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +    V  + +       +   KP G LRIA  I +   +    L EF  LYPDI+
Sbjct: 68  LALFQRYQSVIAQFDELSGIGSD---KPEGTLRIAAPISIISIIFIHALNEFGRLYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   N+ +D+     D AI +      SS +   L  +    +A P YL +  E    
Sbjct: 125 LHISQSNELVDLIDKGIDVAI-VGGAQPDSSWVSSTLGELDYRLFATPEYLAHAPELTHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGS 239
            +L+ H LI       K    FNW   +  P GE       + L +      +Q  +   
Sbjct: 184 DDLENHQLI-------KVWPLFNW--HLKHPNGESFYFNGPTKLTLTDLHGAIQATLDHG 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI   P+  VK       L  ++ + I     +   Y +  +   K++ F  F+  KA +
Sbjct: 235 GILYGPELFVKQQIKEGRLKVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPE 294


>gi|170751628|ref|YP_001757888.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658150|gb|ACB27205.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 315

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 129/292 (44%), Gaps = 6/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LR F  V   G+ T AA     ++ S+SR+IS LE  +G  L  RH R ++ T +G 
Sbjct: 12  LDDLRAFCAVVDLGTVTAAAASRGETKGSLSRRISRLEAALGAILIARHPRAVSPTAEGL 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E    L+      +++   P+G LR+ T++D G  L+ G +  F   YP I +
Sbjct: 72  AFYAKVQESLALLDEAAETARDARTVPAGHLRVTTSVDFGIELMPGIVASFRRAYPQITV 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +I  +  +D++ +  D A+RL   ++ +      ++ + +  YAAP YL     P S+ 
Sbjct: 132 DMINTDARLDLAANRIDLALRLGD-VEETGYRAALILRLWVGLYAAPDYLARRPAPTSLA 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +H+LI   +         +      R         ++ + + ++++  + G+GI  L
Sbjct: 191 ALPEHDLILSRERPGALGIMLS--DGQGRTEQVALSPAVRASDFAAVLRLTLAGTGIGHL 248

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +      N  LVR++    T    +        +   +++ FR  +  +
Sbjct: 249 PSAVAAGSVANGALVRVLAPWATAGGALRAVSLAGRELPARVRVFREHVRSE 300


>gi|187922508|ref|YP_001894150.1| DNA-binding transcriptional activator GcvA [Burkholderia
           phytofirmans PsJN]
 gi|187713702|gb|ACD14926.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 322

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 125/305 (40%), Gaps = 18/305 (5%)

Query: 3   FDWDKL------RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
            D  +L      + F   AR  SF+ AA++L ++  ++S QI  LE ++G+ LF R  + 
Sbjct: 1   MDLRQLPALNAIKAFEAAARHESFSRAADELFVTHGAVSHQIRALEADLGVSLFARDGKR 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           + LTE G +           L     E++    +   +L ++         +   +  F+
Sbjct: 61  VRLTETGRRYATHVRSALMALADATREIRAGDRER--RLVVSMLSSFAARWVTPRVGSFI 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             +P   ++L+  N   D + D  D AIR     +   L    L+        AP++   
Sbjct: 119 EAHPQWDLELLSTNALTDFARDDVDVAIRFGFG-KYPGLHSELLLEEIFFPACAPNF-NG 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            + P +  +L K  L+   D + +   D   L        EP+   L  +S   ++Q  +
Sbjct: 177 GKLPQTPADLAKVTLLRSDDELWRPWFDAAGLTEW----PEPKRGVLYQDSSN-LLQAAI 231

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+AL    +         LVR+ +      +  YF     +  T ++KAFR+++F +
Sbjct: 232 DGQGVALTRRSLAMPEIAAGRLVRLFDVDGPSPWQYYFICTPQMLETARVKAFRDWVFEE 291

Query: 294 ARDWK 298
              +K
Sbjct: 292 VGRFK 296


>gi|170697164|ref|ZP_02888259.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170138000|gb|EDT06233.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 301

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 109/289 (37%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 11  QALRAFESAARLQSFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGVTLTSDGQC 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 71  LYEAVRVSLDTLRGATATLRARRE--HGALTIVTDFGFATYWLMPRLAGLKRVMPDVDVR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+AD AI        S    R L    +    +P +     +      
Sbjct: 129 VVTS-QDYDAQRDHADIAILFGDGHWPSCTAAR-LFPESVTPVCSPTFRAAHPDVARPDH 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    +                 +  NSY  ++   +LG G+AL  
Sbjct: 187 LHALPLLHVQPTHPERWLSWAGWFDAHGLDAPAAARGVTFNSYALVIHAALLGEGVALGW 246

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +   +  LV++++  +  S   +   P           FR ++ 
Sbjct: 247 SPLVDELVASGQLVKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 295


>gi|126737841|ref|ZP_01753571.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126721234|gb|EBA17938.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 304

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 126/291 (43%), Gaps = 10/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    + R GS + AAE+L L+Q ++SRQ+  LE ++G++L  R  + L+L+E+     
Sbjct: 14  LRSLEALDRLGSASAAAEELSLTQGAVSRQLKTLEAQIGLQLIERKQKKLSLSEEAKIYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +   ++    + LQ +    +G L +A     G   L   L +F  L+PDI I + 
Sbjct: 74  EEIRQALEQIAQATLRLQSA--PLAGTLNLAILPAFGMRWLMPRLPQFSRLHPDITINMS 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 + S +  D AI   K           L + H+    AP  L   +   + +E+ 
Sbjct: 132 TRLNQFNFSTEAFDAAIHFGKS-DWPGTESLLLKSEHLIPVCAPQ-LAPEKTEFTTREIL 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+    +  +     +W+    +            + + +I Q  + G G+ALLPDY
Sbjct: 190 QLPLLH---IQTRPNAWRDWVQAQGKTEEIENFGGTTYDQFATITQAALHGLGVALLPDY 246

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           + + +     L  +  +        Y  +P++   +  LK FR+++  +A+
Sbjct: 247 LAEQDLATGRLKALWPNATETKGAYYLVWPKSKSRSPALKTFRSWLAEQAQ 297


>gi|238894775|ref|YP_002919509.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547091|dbj|BAH63442.1| putative LysR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 301

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 6/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ L++F  V    SF  A++ L +  S++SR IS LE ++ ++L  R  R + LT+ 
Sbjct: 6   LDFNALKIFIAVVERDSFVGASKALEMPTSNVSRCISQLEDKLNLQLIERSTRHMKLTQA 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   +PD+
Sbjct: 66  GHLLYTRAKPLLEALEQTETELTLRQMQFKGPLRICIPNEIGPVLLGSVVADFACQHPDL 125

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I  + +    +   D  D A+ + R  +  S  I R LVTI     AAP  ++    P 
Sbjct: 126 EISCVTNLSGYESLRDDLDLAVIVSRGQMDDSDYIARHLVTIPCTIVAAPSVIQRYGTPS 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            IQ+ ++   IT  + +      + ++               +VNS     +  + G G 
Sbjct: 186 RIQQFEELPCITTVNALKGA--PWQFVNKKGGFETIKVNGRYRVNSGEMAGRAAISGVGF 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L     +   D+  L+ I  +       ++  Y +      K +A  +F+  + 
Sbjct: 244 AILSKQACQPYIDDGWLIEIEFEQSAAPLQLFALYSDRRYLPAKTRALIDFMHQRL 299


>gi|170736720|ref|YP_001777980.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818908|gb|ACA93490.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 315

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 126/288 (43%), Gaps = 8/288 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD  RVF  + R  +   AA+ L + Q+++ R+++ LE  +G  LF R ++G   T 
Sbjct: 25  TMNWDDARVFLAIHRERTLRRAAQTLGVDQATVGRRLATLEHMLGATLFLRSSKGYLPTP 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R    +           Q    + +G+++I TT  L    +  ++      +PD
Sbjct: 85  VGELALRAAEAMEQHAHELVRLTQGVDRRLAGEVKITTTDALAIEFVMPSIARLHTKHPD 144

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L      ++++   AD AIR  +P ++  L+ R+L    M  +A+P YL    EP 
Sbjct: 145 VSVALNTSTHILNLAKREADIAIRTVRP-ENPDLVARRLACWDMGLFASPDYLHRHGEPE 203

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +    H+L  +   I    +          PI   RI   + NS L +      G G+
Sbjct: 204 RGRAFAGHDLAVYQPYIDASRKP----TLAGEPIDGGRI-VTRTNSNLMLRAALRAGLGV 258

Query: 242 ALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRN 288
             +P ++ + +  L RI  D +    + V+      L++T +++A  +
Sbjct: 259 GEIPVHMGERDG-LARIWSDRMRASPYEVWLVTHRDLRHTARIRAAID 305


>gi|34495504|ref|NP_899719.1| glycine cleavage activator protein [Chromobacterium violaceum ATCC
           12472]
 gi|34101360|gb|AAQ57729.1| glycine cleavage activator protein [Chromobacterium violaceum ATCC
           12472]
          Length = 306

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 113/294 (38%), Gaps = 17/294 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF V A   SFT AA  L L+Q +ISR +  LE   G  LF R ARGL LT +G 
Sbjct: 6   LNALRVFVVAAEHLSFTRAAAALSLTQGAISRHVQTLEEYYGATLFTRQARGLALTAEGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L +   E +  L      L+         LR+          +  NL +F   +P+  +
Sbjct: 66  ALVKPAREAFQLLNEASEALRLRQSD----LRVRMPPTPAMRWVLPNLADFQARHPEYTL 121

Query: 125 QLIL---DNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            L+     NK  +      D A+  L  P  +  L    +    +    +P  L      
Sbjct: 122 HLLTQLIHNKPFN--RAEYDLAVVGLSSPEAAPDLRLECICREKLIPVCSPSLLAGKHPL 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  H L+              WL         P  S +  ++    +   V G G
Sbjct: 180 HAPDDLKHHTLLH---PWRDQNTWQRWLTLAGVSGVNPE-SGVTFDALEYALHAAVAGMG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           + L    +V    D+  LV   + V+   +  Y  YP  L    K++AFR+++ 
Sbjct: 236 VTLAQASMVTQDLDSGRLVIPFDTVLETEWAYYLVYPHELAELPKVRAFRDWLV 289


>gi|190889933|ref|YP_001976475.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190695212|gb|ACE89297.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 302

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 125/289 (43%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   V+   SF  AA +L ++ S+IS  IS LE  +G++L  R  R +  TE+G 
Sbjct: 6   LSQLAVLAAVSEHRSFRAAARELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L         +++     ++++  KP+G LRI         LL   L +FL LYPDI +
Sbjct: 66  LLLERLRPALEEIDIALEAVRDTRAKPAGNLRITAPRFASDILLAPRLGDFLNLYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  ++   DI  +  D  +RL + +++  +  R    +     A+P Y +   +P   +
Sbjct: 126 EIANEDGFTDIVKEGFDAGLRLEESLEADMIAVRFSPNLTTVIAASPDYFERHPKPEHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I            + W    D       +   L V+     +   + G+G+A 
Sbjct: 186 DLVHHRCI---KRRFTNGSIYRWEFEKDGQELVVAVDGPLIVSEDRLALLAALNGAGLAY 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L D  V        LVR++ED   P    +  YP   +    L+AF +F
Sbjct: 243 LFDIRVHAELAAGKLVRVLEDWCAPYPGPFLYYPTRRQMRPALRAFIDF 291


>gi|330952305|gb|EGH52565.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 316

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 111/295 (37%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LT+
Sbjct: 7   DVSLDLLRAFEVAARLRSFTAAALELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++    + E        L++AT        L   L  F  + PD
Sbjct: 67  AGEVLFSHVQAGLQSIDSGLTAITEHHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  +   + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESHWLFSEEVFPVCSPQLIAGRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNDALRDFPLLHLRGESINHWFDWAGVFRALDIPQAPAPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWKHLVDDLLDQGLLCRPIAGAAISGQGYYVVLPQRKRRVQIVQQFVDWLASE 298


>gi|94309003|ref|YP_582213.1| DNA-binding transcriptional activator GcvA [Cupriavidus
           metallidurans CH34]
 gi|93352855|gb|ABF06944.1| DNA-binding transcriptional dual regulator, LysR family
           [Cupriavidus metallidurans CH34]
          Length = 297

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 120/297 (40%), Gaps = 13/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LR F   AR  SF+ AA +L ++  ++S QI  LE E+G +LF R  + + LT  G 
Sbjct: 4   LAALRTFEAAARHESFSRAATELFVTHGAVSHQIRALEEELGQQLFERRGKRVMLTTNGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +   ++      LQ  +     +L I+T        L   +  F+  +P++ +
Sbjct: 64  LYAERVRDALLQIADATRVLQAGNRDK--RLTISTMPSFAARWLTPRIGSFIEQHPELDV 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  N  +D + +  D A+R+        L   +L+        +P+Y    R P    
Sbjct: 122 ELLSSNSLVDFASEEVDIALRMGTG-HYPGLYVERLLDDVFFPVCSPNY-NGGRLPEQPA 179

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            +    L+       +      W         EP    L       ++Q    G G+AL+
Sbjct: 180 HMAGMPLLR-----GEGDPWKPWFEAAGLDWPEPTKGLLLQ-DSSLLLQAAAEGQGVALI 233

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              +  ++     +VR+ +  I   + ++F    A   T K++AFR+++  +   ++
Sbjct: 234 RSSLAYNDLLSGRVVRLFDVSIPCPWLLHFVCTHASLETPKVQAFRHWLLPEMERFR 290


>gi|254471502|ref|ZP_05084904.1| transcriptional Regulator, LysR family [Pseudovibrio sp. JE062]
 gi|211959648|gb|EEA94846.1| transcriptional Regulator, LysR family [Pseudovibrio sp. JE062]
          Length = 308

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 121/295 (41%), Gaps = 11/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               ++ F VV R  SF  AAE+LH++ ++IS QI  LE   G+ LF+R  R L LT++G
Sbjct: 6   SLKSIQAFEVVVRRLSFKDAAEELHVTPTAISHQIKNLEEHFGMALFHRLPRSLRLTKEG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   E + KL      L   +    G L I TT     N L   LK F    P I 
Sbjct: 66  EIYAPFIREAFEKLNAGSAAL--LNDDLDGTLTITTTNSFASNWLVPRLKRFSEQNPLIA 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++  ++ +    D  D AIR  +      L    ++   + A  AP YL    EP  +
Sbjct: 124 VKVLGSDELLTFPKDNIDLAIRYGES-DHVDLHAAWILDDFVSAVCAPDYLPTSPEPSML 182

Query: 184 Q--ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           Q  +L ++    F D  P     F            P+      +     +     G G+
Sbjct: 183 QKGQLIQYEWTGFSDKDPSWEGWFQ----NQGFGFAPQKPVNTFSEEHMCISAARDGHGV 238

Query: 242 ALLPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL+       +    R++   D    + + Y   P++  N  K++ F++++  +A
Sbjct: 239 ALVSLIAAARDLEEERLVAPFDYSVKNKSYYLVCPKSSANRAKVQVFQDWLLDEA 293


>gi|330815370|ref|YP_004359075.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
 gi|327367763|gb|AEA59119.1| Transcriptional regulator, LysR family protein [Burkholderia
           gladioli BSR3]
          Length = 309

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 127/301 (42%), Gaps = 22/301 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L +F  V    SF+ AA +  ++ SS++R+I  LE ++G+++ +R    +  TE G  L
Sbjct: 8   HLALFVDVVELQSFSAAARRHDMAASSVARRIDQLEAQLGLRVLHRSTHAMRPTEAGQLL 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +     +   +   Q EL +   +P G LRI      G+  L   L  F+  +P I ++L
Sbjct: 68  YERARSLLAGMRGLQAELHKQRDEPGGLLRIDCPAPFGRLHLMPALAAFMRRHPAIVVEL 127

Query: 127 ILDNKDIDISMD----YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +L +  +D+  +      D A+R+  P+ ++  +   L        A+P Y+     P S
Sbjct: 128 VLTDSMVDLPGERLGAEVDLALRIG-PVAATRFVATVLAPQRRVLCASPAYVAARGAPRS 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++EL +H+ + +    P     F            P     + N   +++   V G GIA
Sbjct: 187 LEELARHDCLAWHGSPPPGAWRFGEHRHA------PDAPRFRSNHSEALLAAAVEGLGIA 240

Query: 243 LLPDYIVK---DNPNLVRIM---EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP ++      N  LV +       +    T++    +    + + +    F+    RD
Sbjct: 241 HLPTWLAGVALANGVLVALEVGGAAPVLEDATIHLL-RQQSGGSARTQVLLEFL----RD 295

Query: 297 W 297
           W
Sbjct: 296 W 296


>gi|262043009|ref|ZP_06016152.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039611|gb|EEW40739.1| LysR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 298

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 111/292 (38%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AA +L ++ S++S+QI+ LE  + + LF R  R L LT  G 
Sbjct: 6   LNALRCFEAAARLLSLKLAASELCVTPSAVSQQIARLEETLNVPLFIRTPRRLQLTAVGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R     +H++      LQ        K+ I+ T       L   L +F   YP I+I
Sbjct: 66  IYLRAVQPAFHQIAAATQRLQVPPGPE--KVAISCTSGFAIQWLLPRLADFERRYPQIEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+   N+ +D+  +  D A+R         L   +L+   +    +P  +   R      
Sbjct: 124 QIGTTNRRVDLLSEGIDFAVRHGVGGW-PELQAYRLLDDDLMPVCSPQLIAPRRTLTDAS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+         +    W   V       R   +  +S   + +    G G+ALL
Sbjct: 183 DLLQYPLLHDEHREDWAL----WCEAVGLAPHFARRGPVFTDSN-GVTEAAFAGMGMALL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               +        LV  +   I      +  Y E        + FR+++  +
Sbjct: 238 RRSFIAPALTQGRLVNPLAQPIACPLAYHLVYHETALLAPANRCFRDWLLGQ 289


>gi|295688180|ref|YP_003591873.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295430083|gb|ADG09255.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 295

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 129/289 (44%), Gaps = 7/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            WD  R F VV R GS + AA  L ++Q S++R I  LE  VG KLF R  RGL+ T++G
Sbjct: 6   SWDLFRTFAVVLREGSLSGAARVLGMTQPSVARHIDALEAAVGAKLFVRSQRGLSPTDRG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L      +        +     +   SG +RI  +  +G   L   L      +P + 
Sbjct: 66  LALRSHAESLVATS-AALLRAASGTEGASGTVRITASEVVGAEHLPPILAALRRAHPALA 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+L N   D+    AD A+R+ +P Q + L+ RK+  + +  +A   YL     P + 
Sbjct: 125 IELVLSNAVSDLLQRQADIAVRMVEPTQQA-LVARKVGAVTLGFHAHRDYLAARGVPRTA 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H+LI      P      + +  + R         L+ +S L+ +     G GI +
Sbjct: 184 EDLLAHDLIGVDTETPAVRAVLSRMPGLTREAF-----GLRTDSDLAQLAAIRAGYGIGV 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               I + +P LVR+  D+ +    ++    E L+   + +A  + +  
Sbjct: 239 CQVEIARRDPALVRVTPDLFSFELPLWVVMHEDLRGGARYRAVFDALVE 287


>gi|229167253|ref|ZP_04294994.1| Transcriptional regulator, LysR [Bacillus cereus AH621]
 gi|228616291|gb|EEK73375.1| Transcriptional regulator, LysR [Bacillus cereus AH621]
          Length = 305

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 134/295 (45%), Gaps = 14/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   ISIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   + +F   YP
Sbjct: 67  EAGRVLLSHSKTIFHEVEQARSAIQDLNGLHHGSLTIGSLLTVVNYLLPLAILDFNKQYP 126

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L        +  +  D  I    P+Q   ++   L    +       +    
Sbjct: 127 NIELSVLGLRTGEIREKLLQNELDIGITF-LPVQDKEIVSIPLYKSELTLVVPTSHSLTE 185

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R+ +SI+EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 186 RKYVSIEELQDYPLI----LLPKNFYLTELITSHCQNFNFKPKPILEISTMESLIQMVAQ 241

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G GI +LP    D++  ++   ++I  +  TP+  +   Y          + F  
Sbjct: 242 GMGITVLPKPYIDFLQSEHIQAIKI--ENPTPTIEIGLIYRRDKYMCAATRKFIE 294


>gi|225025628|ref|ZP_03714820.1| hypothetical protein EIKCOROL_02530 [Eikenella corrodens ATCC
           23834]
 gi|224941601|gb|EEG22810.1| hypothetical protein EIKCOROL_02530 [Eikenella corrodens ATCC
           23834]
          Length = 286

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 6/281 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           ++++L  F  +A++ SF  A + L +S S++S  +  LET + + L  R  R ++LTE G
Sbjct: 3   NFNELNYFLTLAQTQSFVKAGQLLGISSSALSHSMKNLETRLNLLLLNRTTRNVSLTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    S +Y  +      L +    PSG +RI       + +L   LK  L  YP I+
Sbjct: 63  QQLFDQLSPLYQAINQEVDALNDFLNTPSGLIRINAPTLAAEAVLYPKLKPILNQYPKIR 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++++D++  DI  +  D  +RL   +    +       + M   A+P YL     P +I
Sbjct: 123 LEIVVDDRWADIVKEGFDMGVRLGNDVAKEMIAVPISAPLKMALVASPDYLAQHGSPKNI 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L +H LI    L  +      W     +  I     S   +N++L  +Q    G GIA
Sbjct: 183 DDLQQHRLIG-TKLSAEHGTVMQWEFKYKKELITFTPKSQFSINNHL-RLQAVSDGLGIA 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNT 280
            +    V D   + +LV ++ +       +Y  YP    ++
Sbjct: 241 WVAHMSVADALNSGHLVELLPEYAMTYEPLYLYYPSRRGHS 281


>gi|167584657|ref|ZP_02377045.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 296

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 110/289 (38%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 2   QALRAFESAARLASFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGVTLTTDGQC 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 62  LYEAVRLSLDTLRGATATLRARRE--HGTLTIVTDFGFATYWLMPRLAGLKRVMPDVDVR 119

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+AD AI        S    R L    +    +P +          + 
Sbjct: 120 VVTS-QDFDAQRDHADIAILFGDGHWPSCTAAR-LFAESVTPVCSPAFRDAHPHVSRPEH 177

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    ++          +     +  NSY  ++   +LG G+AL  
Sbjct: 178 LAALPLLHVQPTRPERWLSWSGWFDAHGLDAQAAARGVTFNSYALVIHAVLLGEGVALGW 237

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +      LV++++  +  S   +   P           FR ++ 
Sbjct: 238 SPLVDELIAAGQLVKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 286


>gi|221068556|ref|ZP_03544661.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713579|gb|EED68947.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 294

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 135/292 (46%), Gaps = 8/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  ++R+ S   AA  L + Q+++ R+++ LE+E+G KLF R   G  LT  
Sbjct: 1   MNWDDTRIFLALSRTHSLRAAARSLGIDQATVGRRLNALESELGAKLFLRAKDGYLLTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +       + +++     P G +R+ +T  +  +LL   ++     +P+I
Sbjct: 61  GEVALAAAKRMESAALDLRTKIEGQDENPGGLVRVTSTDSIAIDLLLPAVERLQRHWPNI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L +  + + +    AD A R  +P  +  L+ R++ +  +  +A+  YL    EP  
Sbjct: 121 RVDLEVSTQLLSLGRRQADIAFRNVRP-DTPELVVRRVASWPVGLFASTSYLARFGEPAP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H+L+ +G      +E   +L+    P  + +I  + V S L + +    G GI 
Sbjct: 180 EDELRGHHLVAYGPY----LEQSPFLSMAGVPARQAKI-AMSVRSSLLVRKAVAAGIGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P ++ +    LVRI      P  + V+      L+ T +++A   F+   
Sbjct: 235 EMPLWMGEREG-LVRIWPQRRRPNDYEVWQVMHPDLQRTARVRAVAQFLAEA 285


>gi|254243544|ref|ZP_04936866.1| hypothetical protein PA2G_04363 [Pseudomonas aeruginosa 2192]
 gi|126196922|gb|EAZ60985.1| hypothetical protein PA2G_04363 [Pseudomonas aeruginosa 2192]
          Length = 302

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 124/296 (41%), Gaps = 13/296 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   AR  SFT AAE+L L+QS+I RQI+ LE  +G++LF R  RG+ LTE G   
Sbjct: 10  ALVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGVKLTEAGLTY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +     +E   + +        G + +A     G   L   LK F  L+P++ + L
Sbjct: 70  SRRVAVRLDAVERDTLAVMGHQG--GGAIELAVVPTFGTQWLLPRLKRFQRLHPEVTVNL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +    +    D A+        S  +   L+  +     +P  L   R  LS +++
Sbjct: 128 TNRTRPFLFADTEFDAALYFGDA-DWSGTVSHFLMRENPVPVCSPELLGGRRT-LSAEQV 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
               L+          + F+     V   +  PR           + Q  + G G+AL+P
Sbjct: 186 AGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFS-----MLAQAAMHGMGVALIP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            ++++D   +  L+  M+         Y   PE    +  L AFR+++  +AR ++
Sbjct: 241 PFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEARQYR 296


>gi|330816052|ref|YP_004359757.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
 gi|327368445|gb|AEA59801.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
          Length = 301

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 116/297 (39%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L+L +S +SR+I+ LE  +G++L  R  R   LTE G
Sbjct: 3   DLNDLYFFVQVVDHGGFAPAGRALNLPKSRLSRRIAELEERLGMRLIQRSTRRFGLTEIG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +     +  + +     +     +P G +R+   I L    +   L  F+   P ++
Sbjct: 63  ATYYAHCRAMLVEADAADEAVALLHAEPRGIVRVTCPIALLDAEVGQMLAAFMAQCPHVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D A+R+R  P++ S L+ R L        A+P  L     P  
Sbjct: 123 IHLEETNRRVDVVGEGVDVALRVRPPPLEDSELVLRPLAERGQCLVASPSLLAGHEAPRV 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G   P+    +N                L      ++    + G G+ 
Sbjct: 183 PADLAALPSLALG--APQDDHVWNLRGPAGAKAVITHRPRLVTRGMFALRAAAIAGVGVV 240

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +V+   +   L  ++ D       V+  Y         ++A  +F+  +  +
Sbjct: 241 QLPTMMVREAIERGALQVVLADWAPRREVVHAVYASRRGLMPAVRALLDFLAARFAE 297


>gi|312959768|ref|ZP_07774284.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311285934|gb|EFQ64499.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 316

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 134/304 (44%), Gaps = 15/304 (4%)

Query: 1   MSFDW--DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           M+ +   ++L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    + 
Sbjct: 1   MNPNLLTNQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDSLESSVGSRLFQRSTHAVL 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            T  G         +  +L+  + E    S  P G +R+      G+  L   + +FL +
Sbjct: 61  PTPAGLAFAERARRIVSELQLARAEAVSLSHAPEGLIRVDAPAAFGRRHLAPVIADFLNV 120

Query: 119 YPDIQIQLILDNKDIDIS---MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           YP + + L L +  +D+    +   D  +R    I  + LI   L +I   A A+P YLK
Sbjct: 121 YPGLDVHLHLIDSFVDMQGAHLGKVDLVLRAGH-IVDTRLIATPLASIVRIACASPAYLK 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           +   P   +EL  H+ + +  L P  M  + +     R    P+   +  N+  +++   
Sbjct: 180 SRGTPTHPRELSDHDGLDWDGLAP--MFAWRFEMDGRRATYRPQRIRMSANNAEALLCGA 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPS---FTVYFCYPEALKNTGKLKAFRNF 289
           + G GIA LP ++  +      L+ +  +   PS     +Y    E  +   + +    +
Sbjct: 238 LAGLGIAHLPTWLASEYLVRGELLPLFCEDGLPSPETTGIYALRLE-QQPNARSRLLLEY 296

Query: 290 IFLK 293
           +  +
Sbjct: 297 LKSR 300


>gi|237510006|ref|ZP_04522721.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|235002211|gb|EEP51635.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 321

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 118/288 (40%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 13  WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVAL 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    +              G +RI+ +  +G  +L   +      +P + I
Sbjct: 73  ALRAHAEAMESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHPALTI 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+  D+    AD A+R+ +P Q+  LI R +  I +  +A   YL     P    
Sbjct: 133 ELALTNRVQDLLRREADIAVRMTRPGQTQ-LIARHIGGIELGLHAHRDYLARRGTPRDAG 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H LI          +        DR         L+ +S L+ +     G+GI   
Sbjct: 192 ELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----ALRTDSDLAQLALIRCGAGIGAC 246

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + K +P LVR++         ++    E L+ + + +A  + +  
Sbjct: 247 QAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAE 294


>gi|221212147|ref|ZP_03585125.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221168232|gb|EEE00701.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 304

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 126/288 (43%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQI  LE ++G+ LF R  R + LT+ G +  
Sbjct: 22  LLVFEAAARHESYTRAADELSLSQSAISRQIQTLEDQLGVPLFRREGRSVKLTDVGRRYF 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 82  AEVGGALGRIRGATLQ-AMSHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 140

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               +ID  +D  D AI +        L   +L    + A A+P    +     +     
Sbjct: 141 SRIGNIDFHVDDLDAAISVGTG-DWPGLHAHRLYNEFLIAIASPDAPPDANGERAPAWAA 199

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           +  L+    +         W A       + RI    ++ S+  ++Q    G GI L+P 
Sbjct: 200 RQTLLG---VTSNQHAWAEWFAHYRLDHRQMRIGPSFELTSH--LIQAVRAGMGIGLVPK 254

Query: 247 YIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +V+D      LV I  D IT   + Y  YP   ++   L AFR+++ 
Sbjct: 255 VLVEDELSRNELVSI-GDAITSRRSYYLVYPPENESLPSLAAFRDWLM 301


>gi|167035657|ref|YP_001670888.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862145|gb|ABZ00553.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 316

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 127/290 (43%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-ARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 10  ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N    
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQDYLDNHAPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L KH  I++ D +    E       +           L+  S ++     + G G
Sbjct: 189 RQVADLAKHPFISYVDDLAFSSELLYLANLIPSASAH-----LRSTSVIAQYTAALQGRG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +P LV ++ + I  +   +    E L+   ++    ++I
Sbjct: 244 LAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 293


>gi|148826197|ref|YP_001290950.1| DNA-binding transcriptional activator GcvA [Haemophilus influenzae
           PittEE]
 gi|229846225|ref|ZP_04466337.1| DNA-binding transcriptional activator GcvA [Haemophilus influenzae
           7P49H1]
 gi|148716357|gb|ABQ98567.1| predicted methyltransferase [Haemophilus influenzae PittEE]
 gi|229811229|gb|EEP46946.1| DNA-binding transcriptional activator GcvA [Haemophilus influenzae
           7P49H1]
          Length = 297

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +GI+LF R  R L LTE G 
Sbjct: 8   LNSLKSFESAARHLSFTKAADELCVTQAAVSHQIKLLEEFLGIELFKRKNRSLELTELGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L      L      P   L I+     G   L  +L EF  LYP I++
Sbjct: 68  AYFVDINKILRRLNEATERLLMLKADPH--LNISVPQTFGIQWLVPHLSEFNQLYPQIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI         +L   +L   ++   A+P  L      +  +
Sbjct: 126 RLTGVDQDEGLLNKEIDLAIYYGLG-NWQNLQVDRLGEENLLILASPELLAEN-PIIQPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH LI             N L   D  I +  +     +     +Q  + G GI L 
Sbjct: 184 DLKKHTLIHI-HTCDNWQTMANHLQLDDLNIQQGPL----FSHTFMALQAAIHGQGIVLA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +     +N +L  ++   +    + Y        +  K++AFR +I 
Sbjct: 239 NRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQAFRQWII 288


>gi|330992177|ref|ZP_08316125.1| HTH-type transcriptional activator ttdR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760376|gb|EGG76872.1| HTH-type transcriptional activator ttdR [Gluconacetobacter sp.
           SXCC-1]
          Length = 306

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 5/292 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS+D    LR F  +  +GS T AA  L  S +++SR+++ +E  +G  L  R+ R   L
Sbjct: 1   MSYDEIGDLRFFSALVDAGSLTAAARGLGTSPAAVSRRLARIEARLGSTLVIRNTRHFGL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           +E G   +     +  +++  + E+  S+  P G L I   ++LG+  +   ++ F   +
Sbjct: 61  SETGRLYYERGLAIVAEIDYLEEEISSSTRAPRGTLGIGAPVELGRRQIAPFIEAFSARH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I L L ++ +    D  D  +RL  P    +++ R L +      A+P Y++    
Sbjct: 121 PKLNINLALASEGVYDFSDSLDVVLRLGLPDTPGAVVTR-LASTMRVLCASPDYIRRRSL 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   +EL +H+ +         + +   +              L   +   I  + + G 
Sbjct: 180 PAHPRELVRHDCLCLRRNKTMALLNRWAIGNDTETEVVTVEPRLSATNAEIIHDWALSGQ 239

Query: 240 GIAL-LPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GIA  L   + +D     LVRI  D+      +Y   P        ++AF N
Sbjct: 240 GIAYKLLCDVYQDLEEGKLVRIFPDLQGEKIDLYAVLPGRQHTRASVRAFVN 291


>gi|145298742|ref|YP_001141583.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851514|gb|ABO89835.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 312

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 10/293 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +  ++  +F  V + G F+HAA  L +   +ISR+IS LE ++G  L +R  R L LT
Sbjct: 1   MKY-IEEFYLFVKVVQEGGFSHAAAALGMPTGTISRRISQLEEQLGCSLLHRSTRKLRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G + +        ++E    E+Q      +G +R+A  I L   LL   L +F L YP
Sbjct: 60  DEGLRYYERLCTPLAEIEQATGEIQGREADINGVIRLAAPIALSNTLLVDMLADFGLHYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q  +   N    +  +  D        +  S      L  I    +A+  YL+    P
Sbjct: 120 EVQFDITQTNDHHHLFDNDRDLVF-FNGELPQSMTNALCLGHIEYGLFASRLYLEKMGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L++H LI          + +  +   D+ I   R + L VN   + ++      G
Sbjct: 179 AHPAQLEEHALI-----YCWPHQHWQLIGQDDQTIQIKRAAKLTVNQTQAAVRAARRHLG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   P + V     +  LV ++ D  T     Y    +      ++K F  F+
Sbjct: 234 IVNAPLHYVHPFLQDEQLVAVLPDWKTGHRPFYMVRCQPQFAPLRVKMFAEFV 286


>gi|117621512|ref|YP_856333.1| LysR family transcriptional regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562919|gb|ABK39867.1| transcriptional regulator, LysR family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 312

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 122/293 (41%), Gaps = 10/293 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M +  ++  +F  V + G F+HAA  L +   +ISR+IS LE ++G  L +R  R L LT
Sbjct: 1   MKY-IEEFYLFVKVVQEGGFSHAAAALGMPTGTISRRISQLEEQLGCSLLHRSTRKLRLT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G + +         +E    E+Q      +G +R+A  I L   +L   L +F L YP
Sbjct: 60  DEGLRYYERLCTPLAAIEQATGEIQGKEADINGVIRLAAPIALSNTILVDMLADFGLHYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++Q  +   N    +  +  D        +  S      L  I    +A+P YL+    P
Sbjct: 120 EVQFDITQTNDHQHLFDNDRDLVF-FNGELPQSLPNALCLGHIEYGLFASPLYLEKMGTP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L++H LI          + +      ++ +   R + L VN   + ++      G
Sbjct: 179 AHPAQLEEHALI-----YCWPHQHWQLTDRDEQTVQIKRTAKLTVNQTQAAVRAARRHLG 233

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I   P + V     +  LV ++ D  T +   Y    +      ++K F  F+
Sbjct: 234 IVNAPLHYVHPFLQDEQLVPVLPDWKTGNRPFYMLRCQPQFAPLRVKMFAEFV 286


>gi|78357533|ref|YP_388982.1| LysR family transcriptional regulator [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219938|gb|ABB39287.1| transcriptional regulator, LysR family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 297

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +   VAR  SF+ AAE L +  S++SR+I  LE  +G+ LFYR  R + LT+ G+
Sbjct: 9   LNDVPLLVEVARQKSFSKAAEALGIGVSTLSRRIKLLEKRMGVLLFYRDTRNVELTDNGA 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      V  +++     +  +  KPSG +R+   +DL   LL+  L +F   +PDI +
Sbjct: 69  YLLDRCGFVLEEVQKAYDSVVLNMQKPSGLVRVCMFLDLYDGLLKKVLLDFAARWPDISL 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D+     D A      I + +L+ RKL+TI    YA+P  L+    P    
Sbjct: 129 ELTFQDHPVDMRTAPFDVAFVTGNAI-APALVTRKLLTIEPFLYASPLLLERYPMPREPD 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +   I       +       +    R +    +     +S      + + G G+ALL
Sbjct: 188 DLHRMPCIVLQRFGGRWP-----MHNGSRQVTVDVVPRYSFSSVEMCRDFLLAGHGVALL 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLK 293
                + +     LVR++ D        V      + +   +++ F + +  +
Sbjct: 243 RKERARPDEKAGRLVRLLPDWSGGFVHDVNLVM-GSRQLPMRVRLFVDHVLAQ 294


>gi|83951205|ref|ZP_00959938.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
 gi|83839104|gb|EAP78400.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
          Length = 293

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 125/295 (42%), Gaps = 6/295 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE+L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAYHVARVGTVSGAAERLGVHHATVIRHIDALEERLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       ++      SG L + +   L  +LL   L  F   YP++ 
Sbjct: 63  DDLLRVAQATDDQFSQLVGRIRGRGDGVSGDLVVTSLGGL-SHLLVPVLTRFREDYPEVV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +  ++   +    A  AIR          + +  V   +  YA+  Y++    P  +
Sbjct: 122 VRFLTGDRLFRLEYGEAHVAIRAGSVPDQPDNVVQPFVKQRVALYASRSYVERHGAPKDL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ++  H  +   D   +            R          +   + ++ +  + G+GI  
Sbjct: 182 ADMANHFFVGADDPNSRAP-----FMRWMREHIPAENIVFRSGDFHALRRAIIEGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +     ++  ++V I+      +  ++      L  T K++AF   +   A++W+
Sbjct: 237 MFQLQARELDDMVEILPPQDDWTSPLWLVTHMDLHRTTKVQAFLTVLKEAAKEWE 291


>gi|313499704|gb|ADR61070.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 309

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 12/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LRVF VVAR  +F  AAE+L ++Q+++++QI GLE  + ++LF R  RGL LT+ G
Sbjct: 22  SLNALRVFEVVARHLNFRLAAEELGVTQAAVAQQIRGLEASLNLRLFERLPRGLALTDAG 81

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        ++     L+  +      L ++ T       L   L  F   +PDI 
Sbjct: 82  LGYSGSIRNALAMIDEATRLLRPQASH----LTVSVTPTFASKWLIPRLGSFAHSHPDID 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++  ++    + D  D A+R  KP   + L    L+   + A A+P   + C+ P S 
Sbjct: 138 LRVLATDRLSHFNTDGVDLAVRYGKPDIGAGLNSELLMEQRLVAVASPTLFEACKAPTSF 197

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L    L+              +LA +    G+     L+ N     +   + G GIAL
Sbjct: 198 EQLQAFTLLHDAHDF-----WPRFLAQLFPQHGQATARNLRFNQTSLAIDAAISGQGIAL 252

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                V D+     L ++    +    + Y  +P  L+    L   + ++  +A
Sbjct: 253 ASLAFVIDDIVAGRLTQVFAQQLRLDKSFYLVWPRKLQQPESLGIVQRWLKQQA 306


>gi|170696986|ref|ZP_02888082.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170138160|gb|EDT06392.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 295

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 120/290 (41%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  +   G    A  ++ LS +++S +++ LE+  G  L  R  R ++LT++
Sbjct: 1   MLLDNLALFLRIVEKGGLAAAGREVGLSPATVSERLAALESHYGAALLTRTTRAISLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  + +  +  ++  +   SG +R++   DLGQ  +   +  FL  +P +
Sbjct: 61  GRTLVAGARRLLAEADELESRVRLGAQTLSGPVRLSAPADLGQARVVPVVDAFLAEHPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+     D AIR R  +  S+L  R L        AAP YL     P  
Sbjct: 121 TVDLHLGDGYVDLVGQGLDFAIR-RGTLADSALRSRSLGRSRRVVCAAPAYLAAHGTPRH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             EL  H+ I          E   W   +D  +    +   +V N    +  +CV G GI
Sbjct: 180 PDELAAHDCIVMRFGQELYAE---WPFRIDDELKRVMVRGRRVANDGALVRAWCVAGHGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           AL     V+ +     LV I+ D       +   YP A     +++A   
Sbjct: 237 ALKSLLDVEQDLASGALVEILRDFSPGEVDLQIVYPGAAAQPRRVRALIE 286


>gi|222110725|ref|YP_002552989.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221730169|gb|ACM32989.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 288

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 131/295 (44%), Gaps = 14/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR F   AR  + T AAE+LH++Q+++S+ I  LE  VG  LF R  RGL LT
Sbjct: 1   MHLPLNALRAFEAAARHLNLTRAAEELHVTQTAVSQHIRNLEERVGKPLFRRLPRGLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L  V S+ + ++      L +   +P   L +          L   L+ F   +P
Sbjct: 61  DEGRQLVPVLSDSFARIGQALQRLAD--TRPREVLTVGVVGTFAVGWLLPRLRAFHESHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L+  N  +D++ +  DCAIR        +    +L+   +    AP      REP
Sbjct: 119 FVDLRLLTHNNRVDLAGEGLDCAIRFGDGAWHGT-DAERLMPAPLAPLCAPEVAARLREP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L    L+       +  E   W A    P   P +     +S L++ +    G+G
Sbjct: 178 ---ADLGAEALL----RSYRTDEWPAWFAAAHAPC--PVLRGAVFDSSLTLAEAAAQGAG 228

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +ALLP  + +      R+++     +     + C  ++   T  L+AFR+++  +
Sbjct: 229 VALLPVRMFERELRQGRLVQPFACTAALGDYWLCRLKSRAPTDALQAFRDWLLRE 283


>gi|148553034|ref|YP_001260616.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498224|gb|ABQ66478.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 294

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 126/295 (42%), Gaps = 14/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF   AR  +FT AAE+L ++Q+++S QI  +E  +G  LF R  R ++L+  G 
Sbjct: 8   LSAVRVFEAAARHLNFTRAAEELAMTQAAVSYQIRMIEDRLGTPLFVRSGRRVSLSPAGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    +  + +L+    +++ +     G L I+    +    L   L  F L  PDI +
Sbjct: 68  RLAPAVTAAFDRLDEAFAKVRLAES---GVLTISAAPGIAAGWLGPRLARFQLAKPDIAV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  ++ +D + D  D  IR+ +  +   L   ++         +P Y+          
Sbjct: 125 RLLASHELVDFARDEVDVGIRIGQG-EWPGLRAIEMFGAEFTPMCSPAYIDRMGPFTDPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIAL 243
           +L     +    +    +    W A V   + +      + V+S +        G G+A+
Sbjct: 184 QL-----LDTLRMNSDDVWWRAWFAEVGVAVPDDLDRGSIHVDSQVIEGMAATAGEGVAM 238

Query: 244 L-PDY--IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L P +         LV++    +    + +  YPE    + K+KAFR ++  + R
Sbjct: 239 LTPRFWPFELATGRLVQLFP-HVGDGGSFWLVYPEHRHGSSKVKAFREWLMAEVR 292


>gi|325168392|ref|YP_004280182.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064115|gb|ADY67804.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 302

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 134/296 (45%), Gaps = 16/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ +R F  VAR+ S T  A +L +SQS++SR+I  LE  +G+ LF RH  G  LT++
Sbjct: 1   MDWNDVRYFLTVARTASLTQTASELKVSQSTVSRRIVELEENLGVALFQRHQTGYFLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++ R    V   +   +         P G +R+AT+ +L  +L+   L  F   YP I
Sbjct: 61  GREVLRHAETVEDSILALERGAAGLEKDPQGVVRLATSENLATDLIIPALPAFRERYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC----R 178
            +++I      ++    AD A+R+ +P +  +L+ R +  +    Y +  YL        
Sbjct: 121 CLEIITSTVAAELGRREADIALRVVRPTR-GNLMVRSVGHMTYSVYGSRDYLDRHPYVEG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           EP     L   + IT+ D     M    WL              L  +S  S +     G
Sbjct: 180 EP-----LGGRHFITWDD-SHAFMPAAAWLKREHPGCKI----VLVTSSLPSQIAAVRAG 229

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+A++PD++   + +L+ ++      S  V+      L  + +++A  +F+  + 
Sbjct: 230 LGLAVIPDFLAVGD-DLLPVIPSERMFSNKVWLVTHADLVASARVRAVGDFLAERV 284


>gi|78063595|ref|YP_373503.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971480|gb|ABB12859.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 318

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             +  F   A  GSF  A   L ++ +++S+ ++GLE  +G++L  R  R L LT++GS 
Sbjct: 8   RAILSFVHAADGGSFAAAGRMLGITSAAVSKNVAGLEQALGVRLMNRTTRTLKLTDEGSV 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R        L++    +    + P G++RI+T+   G+  LQ  L   L  YP + ++
Sbjct: 68  FLREARIALDALDSAVDSIVAQRLGPQGRVRISTSAAFGREHLQPVLPGLLARYPGLSVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
              D++ +D+  D  D  IR    I  S+L+ R +  ++    A+P YL +   P +  +
Sbjct: 128 ADFDDRIVDVVRDGYDIVIR-GGNIHDSALVSRPIFRMNTVLVASPAYLASHGIPRAPDD 186

Query: 186 LDKHNLITFGDLIPK-CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L  H LI    L  +     F         +     + L  ++  +++Q    G GIA +
Sbjct: 187 LGAHRLIARRFLGGEVSTWSFRMRGGSIVAVDPGDTAPLTFSAPEAVLQAAHDGLGIAEV 246

Query: 245 PDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIF 291
             ++   +    +L  ++     P ++ +   YP       +++A  +++ 
Sbjct: 247 GVHLAWAHLRAGSLKVLLHRHHLPGTYEMAMQYPHRALKASRVQATVDYLL 297


>gi|300310408|ref|YP_003774500.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300073193|gb|ADJ62592.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 296

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 132/298 (44%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D W  +R+F  VA + SF  AA Q+ LS  +++R ++ LE  VG +L  R  R +  TE
Sbjct: 1   MDRWLAMRIFVQVAEAASFAKAARQMQLSAPAVTRTVATLEELVGARLLVRTTRSVKTTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++       +  ++   +        +PSG L +   +  GQ  +   + E+L LYP 
Sbjct: 61  AGARYLEDCRRILAEIAEAEAAAAGHYDQPSGTLSVTAALLFGQMHVLPIVTEYLDLYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++ +    ++ ++I  +  D A+R+   +  S     ++ ++     AAP YL+    P 
Sbjct: 121 MRARTFFIDRPVNIVEEGMDVAVRIGH-LPDSGFTAIQVGSVRRVICAAPDYLRRHGVPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S  +L +H ++T             W     + +     + LQ N+  + +     G G+
Sbjct: 180 SPADLKQHRIVT----STSAWASPEWRFADGQRVLVE--AALQTNTNEAAIATARQGWGL 233

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +  Y V  +     L R+M +   P   ++  YPE  ++  K++AF +    + R+
Sbjct: 234 TRVLAYQVAADLQAGRLQRVMSEFEEPPLPIHVLYPEGRRSPAKVRAFIDLAVCRLRE 291


>gi|304394897|ref|ZP_07376781.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304357150|gb|EFM21513.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 319

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 121/299 (40%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   L     VA++G F  AA     + S +S  +   E ++GI+LF+R  R + LT
Sbjct: 1   MAIDMALLDAVVAVAKAGGFREAARVTGSNASRLSDAVRRAEQQLGIRLFHRTTRTVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L        +++      +      P G LR+   +   + +L   + EFL  YP
Sbjct: 61  EAGRALMERLLPAMNEVNAALDAVNCYRNTPGGTLRLNVPVSATRLILPALVPEFLQRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DI+++++ ++   D+  D  D  IR  + ++  +++   +          A+P YL    
Sbjct: 121 DIRLEIVAESNVQDVFRDGCDAGIRYDERLEQDTVV-IPIGPRLQRFALAASPAYLAEYG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--NSYLSIMQYCV 236
            P   ++L  H  +  G      M ++ +    +    E     +     +    +   +
Sbjct: 180 RPEHPRDLIHHRCLR-GRYASGIMAEWTFSREGEEISVETSGPLVVTVGGAMDLAVDAAI 238

Query: 237 LGSGIALLPD-YI--VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            GSGI  L D ++    D+  L  +++         +  Y +       LKAF +F+  
Sbjct: 239 AGSGIIYLFDEWLRPALDSGKLEPLLQSWWLTFSGPWLYYSDRRLIPAPLKAFIDFVRE 297


>gi|187920855|ref|YP_001889887.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719293|gb|ACD20516.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 329

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 117/287 (40%), Gaps = 7/287 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + +R++  V    S + AA  L++ Q + S +I  LE  +G +L  R AR    T
Sbjct: 1   MNL-LEAMRIYVRVVERESISSAARDLNIGQPAASERIERLEKYLGCRLLLRSARAFKCT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G   +  +  +   +E T  ++        G +RIA     G+ ++   L      YP
Sbjct: 60  PEGVTFYERSKRILSAVEQTIADVSNDEQALRGTVRIAAPHCFGETVVPQALTLVRAAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L+L+++ +D+  +  D + RL + +   + I R+L  +     AAP YL      
Sbjct: 120 QLDLELVLNDRIVDLVTEGVDVSFRLGQ-LGEGAFIARQLGQVGRVLVAAPGYLSRHGSI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L  H  I                A+V      P  + ++ + +  + +  V G+G
Sbjct: 179 DEPSDLINHPFIRMQGTFGTDQLPLRHQASVVESA--PIRTAVKTSHWRPMYEMIVAGAG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           I +L +    +   +  LVR++       F V            +++
Sbjct: 237 IGVLEEPACVEAFADGRLVRLLPQFEALPFDVNILIQAQRPMPPRVR 283


>gi|269865091|ref|XP_002651801.1| transcriptional regulator, LysR family [Enterocytozoon bieneusi
           H348]
 gi|220063849|gb|EED42255.1| transcriptional regulator, LysR family [Enterocytozoon bieneusi
           H348]
          Length = 264

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 101/248 (40%), Gaps = 5/248 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + ++  F      GSF+ AA    ++ S+IS+ I+ LE  + ++LF R +R LTLTE
Sbjct: 1   MDQYSQMLAFIWSTECGSFSAAARAHEMTPSAISKLIARLEDRLRVRLFQRGSRVLTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+   R    V   +       +    + SG LRI T     +  +   L EFL  YP 
Sbjct: 61  EGAAYLRSAKAVVEAMSEADSLAEGLPSRVSGTLRIHTMTSFAKQQIVPWLPEFLDTYPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++ L  + +D      D AI     + SSS I +K+        A+P YL+    P 
Sbjct: 121 LDVEIQLGAQFVDQFEQGLDIAIH-SGILPSSSRIAKKIGECEWLLCASPDYLEKYGTPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L  H    F    P     F         +  P            +      G+GI
Sbjct: 180 QPQDLMNHRCFNFSFASPWNKWAF---IQDGLGVTTPVKPRGSFTQGELLRDMAKSGAGI 236

Query: 242 ALLPDYIV 249
             L D+ +
Sbjct: 237 VRLADFHI 244


>gi|145297515|ref|YP_001140356.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850287|gb|ABO88608.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 307

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 125/290 (43%), Gaps = 5/290 (1%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           R F  VA+SGSFT AA  L L+ S++S+ I  LE  +G+KL +R  R ++LT +G     
Sbjct: 11  RHFVAVAQSGSFTVAALTLGLTGSALSKSIVRLEARLGVKLLHRTTRRVSLTLEGEAYLA 70

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
              +    LE T+         PSG++RI      G+  +   L +    +P + + +  
Sbjct: 71  SCLQAIRVLEETESSFASEKQSPSGRVRIDLPSAFGRRHVLPILLDLAGSHPQLDLSVTF 130

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           + + +D+     D  +R+      + L+ R+L    +    AP YL   R PL+ ++L +
Sbjct: 131 NERKVDLIEANIDLVVRIGALEDQADLVARRLGEQKLVICGAPSYLALHRVPLTPKDLSQ 190

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           H+ I   D        +       R          ++    +++   + G G+  +P ++
Sbjct: 191 HDCII--DWRSGHRHSWLLRNGAGRTEAYDIPVRYEMGDGEAVLAAALAGLGLVQVPTWL 248

Query: 249 VK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           V    D+  LV ++ D       +   +  +     KL+   + + L A+
Sbjct: 249 VNEQLDSGALVCVLHDQSGGEMPINVIWARSQHMQLKLRVVVDALLLAAQ 298


>gi|126729996|ref|ZP_01745808.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
 gi|126709376|gb|EBA08430.1| transcriptional regulator, LysR family protein [Sagittula stellata
           E-37]
          Length = 297

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 126/293 (43%), Gaps = 10/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DW  ++ F  V  SGS + AA +L +SQ +  RQ+  +E  + + LF+R ARGL LTE
Sbjct: 6   KLDWSLVQTFLAVGESGSLSEAARRLKISQPTAGRQVKQMEEALDVTLFHRQARGLCLTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L      +   L    +     S K SG +RI  ++   Q  L   +       P+
Sbjct: 66  AGTALMPHARTMAESLNALSLAAAGRSEKLSGPVRITASVFTSQVHLPPIIARLRQEEPE 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I L+  ++  ++    AD A+R+ +  +   ++ + +  I +  YA+  Y+       
Sbjct: 126 ISIDLVPTDRSENLLYREADIAVRMFQ-TEQLDIVTKYIGEIELGLYASKDYIARRGRLT 184

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +     H+++ +   DLI K M +F      D           + +      +    G 
Sbjct: 185 DMAGFFDHDVVGYDRSDLILKGMRNFGLEVQRD-------WFATRTDHQTVYWELVRAGC 237

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GI          +P + R++ D+  P+  V+    EA++NT +++   + +  
Sbjct: 238 GIGFAQCLFADADPKVERLLPDIPMPTLPVWLAAHEAMRNTPRIRRVWDALAE 290


>gi|116252209|ref|YP_768047.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256857|emb|CAK07949.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 294

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 134/301 (44%), Gaps = 12/301 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + +R+   V  +GS +  + +L+    S+SR+++ LE ++G  L  R +R L LT+
Sbjct: 1   MDRLEAMRILLAVVDAGSISAGSRKLNAPLPSVSRKVAELERQLGANLIVRTSRNLQLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G        ++   L+  +         P G L I   I+ G   +      F+  YP+
Sbjct: 61  AGRDYVDAARKIMADLDEAERRASGEYQTPRGVLTITMPIEYGSRYVLPIALSFMDKYPE 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+  ++ +D+  +  D AIRL   +  ++L   K+    +   A+P YLK    P 
Sbjct: 121 VSLNLLSLDRTVDLVSEQVDIAIRLGD-LADNALHAAKVGEFRLLTCASPAYLKRHGMPE 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDR-PIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L   + I F          F W   VD  P+     + L+VN+  + +   V G+G
Sbjct: 180 RPSDLIDRDGIIFNKRT------FFWTFDVDGTPMEAVPRNRLEVNTAANCVAAAVGGAG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           IA L DY + D   +  LV I+ D   P   ++  Y        K++AF ++   + R++
Sbjct: 234 IARLFDYQIPDELASGALVPILRDFDGPPQPIHIVYARQGLLALKVRAFVDWALPQLRNF 293

Query: 298 K 298
           +
Sbjct: 294 R 294


>gi|254239508|ref|ZP_04932830.1| hypothetical protein PA2G_00122 [Pseudomonas aeruginosa 2192]
 gi|126192886|gb|EAZ56949.1| hypothetical protein PA2G_00122 [Pseudomonas aeruginosa 2192]
          Length = 291

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 8/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  + R  +   AA  LH+ Q+++ R+++ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDTRVFLALCREHTLRGAARALHVDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G     +  ++           +    + SG++R++TT  L  + +   L    L +PDI
Sbjct: 61  GEAAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLEHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L   +  +D+     D AIR  +P ++  LI RKL +  M  +A+  YL+    P+ 
Sbjct: 121 RVLLDSASAVVDLPKRETDIAIRTLRP-ENPDLILRKLASWPMGLFASADYLRRNGVPVP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +    H+L+ +        E    L     PI + R+  + VNS + + Q    G G+ 
Sbjct: 180 GERFRGHDLVMYEPYWHSQRE----LTLGGEPIRDGRV-VIAVNSNMMVRQALARGLGLC 234

Query: 243 LLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP Y+ + +  LVRI         + V+    + L++T +++A    +     +
Sbjct: 235 ELPLYMGERDG-LVRIWPQRERRRPYEVWMVTHKDLRHTARVRAVIERLVEAFAE 288


>gi|171319318|ref|ZP_02908430.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095463|gb|EDT40431.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 300

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 119/289 (41%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF RH RG+ LT+ G 
Sbjct: 8   LNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGRPLFERHNRGVELTDAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++     +      +    LR++         L   L  F + +P I++
Sbjct: 68  AYLAEVGASFDRIALATAQHFGPGQQR--VLRVSAPATFSLRWLVPKLSSFQVAHPAIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ I+   D  D  +R   P      +  + ++       AP  L+  R   +  
Sbjct: 126 RLSTSNEPIEKLRDKVDLIVR-GGPQAIDGYVAEEFLSEVRLPVCAPKLLEG-RPLRTPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WLA        PR S L +  +   +Q  + G G+A+ 
Sbjct: 184 DLAGFTLLHAATYPGMWPE---WLAAAGHANLVPRHS-LTLEHFYLTLQGALDGLGVAMG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V D+     LV+   +   P +  +     A      ++AF++++
Sbjct: 240 PIALVADDIAEGRLVQPFSEPALPPWRYFTYVAAARAEDEAVRAFKDWL 288


>gi|258625306|ref|ZP_05720209.1| HTH-type transcriptional activator aaeR [Vibrio mimicus VM603]
 gi|258582414|gb|EEW07260.1| HTH-type transcriptional activator aaeR [Vibrio mimicus VM603]
          Length = 309

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 118/292 (40%), Gaps = 7/292 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MSF  + LR+F V+A + +FT AAE L++SQ ++SR+IS LE  + ++LF+R    + LT
Sbjct: 1   MSFPIETLRMFSVLAETLNFTEAAESLNISQPTLSRKISQLEQAINVRLFHRGGNQMHLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G      +  +    ++T  +L +S     G + I     + + L Q   + FL  +P
Sbjct: 61  PHGRMFLETSHRILEDFDSTLEKLHDSPENIRGDISIGLLHPMARWLSQSFFEGFLKRHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++ + L       ++      C I +   +    SL+ ++L        A+P Y+    +
Sbjct: 121 NVSLSL-TTLHPSNMREMPG-CDIMISPLLPDDLSLVAKRLDRYRRIFCASPEYIAMFGK 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  EL  H  IT     PK    + W   V           +  +S          G 
Sbjct: 179 PSTPDELMFHRCIT-NTNCPKPESFWPWEDEVGNSGKINVSGNISTDSVDIATNLACAGL 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A +P   ++       LV + +        VY  Y        +     +
Sbjct: 238 GVAFIPGCQIRQQMAEGKLVDLFDGQYFYDSEVYAIYRSRKYLPMRFTVLMD 289


>gi|90409724|ref|ZP_01217741.1| putative transcriptional regulator protein [Photobacterium
           profundum 3TCK]
 gi|90329077|gb|EAS45334.1| putative transcriptional regulator protein [Photobacterium
           profundum 3TCK]
          Length = 293

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 127/286 (44%), Gaps = 11/286 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L++F  V + GSFT AA  + L ++++SR+I  LE  +  +LF+R  R L L++ 
Sbjct: 1   MRIDDLKLFTTVVQLGSFTVAANAMDLPRANVSRRIGELEKSLNAQLFFRTTRKLRLSQH 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   ++    V    +     L +   +P+GK+++    +  +  +Q  L +F  +YP+I
Sbjct: 61  GEAYYKEVLAVLEAYQKANDTLLKLDDRPAGKVKLGLLPESDEA-IQHILYQFQDMYPEI 119

Query: 123 QIQLILDNK-DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
            + +   N    D+     D AI   K +  SS + R +  +     A+P Y++    P 
Sbjct: 120 DLDIRSTNSCYTDMYEQGLDLAIHAGK-LHDSSFVARHIAQLGRMLLASPSYIEQYGMPN 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ EL  H  I +    P    + NW    +        S L  N+   I +  + G GI
Sbjct: 179 TLAELTTHQCICY--RWPDGTLEDNWDLIDEE---VKVTSRLASNNIGFIRRAMLDGRGI 233

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
             LP  +     ++  LVR++    + +  V+  YP+    +   +
Sbjct: 234 GFLPPLLALASMESGALVRVLPQYQSRADDVWLLYPDRHGISHATR 279


>gi|322835326|ref|YP_004215352.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170527|gb|ADW76225.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 301

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 83/294 (28%), Positives = 139/294 (47%), Gaps = 9/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V  R  +FT AAE+L ++QS++S Q+  LE   G++LF R  + L+LT  G+ L 
Sbjct: 10  LRAFEVATRHTTFTSAAEELFITQSAVSHQLKKLEDSWGLQLFQR-GKTLSLTPAGAALA 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  E + KLETT  +L+E   +   +LR++TT       L   L E   L+P+I + L 
Sbjct: 69  PLVREFFSKLETTLADLREQKGRV--RLRVSTTYSFALKWLLPRLPELARLHPEILVSLE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +K I+ +   +D AIR       ++L    +    +   A+P +L     P    EL 
Sbjct: 127 STDKAINFASADSDVAIRFGHG-NYAALHTEFMFREQLFPVASPAFLAGFGIPAEPAELL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+T  D      +   W   V         S    ++ ++I +  +LG GIAL    
Sbjct: 186 RFPLLT-RDGADLVPKWDAWFKQVGVNTDVLHESVRFADTNMTI-EAALLGQGIALARSG 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            V+    + +LVR+ + V       YF  PE ++    +  FRN++  +++  +
Sbjct: 244 HVEKEIHDGSLVRLFDVVFPSPAAYYFVCPEGIETQPHILKFRNWLLAESQQAQ 297


>gi|71738052|ref|YP_274447.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558605|gb|AAZ37816.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 319

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 116/292 (39%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G++L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECLGFAPASRKLGIPKSKLSRRIAGLEERLGVRLIHRSTRTFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +  S  +P G++ I+    L        +  F   +P +
Sbjct: 62  GRDYYAHCVAMLVEAEAAEEAILRSKSEPQGRVAISCPPALAAMGFNETIARFAADHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+Q+   N+ +D   +  D A+R+R  P++   L+ + L        A P          
Sbjct: 122 QVQVESTNRRVDPLTENIDIALRVRFPPLEDDGLVVKLLGHSAQRLVARPDLAARLSATS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++ L     +      P    +  WL   T            L  +    ++Q  + G 
Sbjct: 182 TLEALSTLPSL----DTPSSSHEHRWLLETTSGHYAEIRHTPRLISSDLDMMLQAALQGV 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A LP+ IV++   +  LV +          V+  +         ++   +
Sbjct: 238 GVAQLPELIVREALQDGRLVELFSQHRPKCGIVHAVFASRRGLLPAVRGLLD 289


>gi|107025823|ref|YP_623334.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692993|ref|YP_838526.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737744|ref|YP_001779004.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895197|gb|ABF78361.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116650993|gb|ABK11633.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169819932|gb|ACA94514.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 311

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 121/297 (40%), Gaps = 6/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D + +RVF  V   GSF  AA  L L  S++SR ++ LE+ +G++L  R  R L +TE
Sbjct: 4   KLDLNAVRVFVTVVDEGSFAGAARVLALPGSNVSRYVAQLESRLGVRLLERSTRHLRMTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  LH     +   L   + EL     +  G L++    ++G  +L   + EF   +P 
Sbjct: 64  AGRLLHERARPMLDALTQAECELTSQQTELRGVLKLCVPGEIGPRMLGPIVAEFASHHPR 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I        +    D  D +I + R  +  S+ + R LV++     AAP  +     P
Sbjct: 124 VEIDCDTSLAGVSTLRDDIDLSIIVNRGKLDDSAFVVRPLVSLPSVVVAAPSLVARVGMP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +   IT   L     + + +     R    P  S  +VNS        V G G
Sbjct: 184 GLTEQLKQLPCIT--TLSTLKGQPWQFADRDGRIHKIPVASRYRVNSGEMAGLAAVNGIG 241

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            A+L +           LVR+  ++      ++  Y        K++A    +  + 
Sbjct: 242 FAILVERACAVELAEGRLVRVPLEMAPAPLQLHAAYASRNSVNAKIRALLQLMQQRL 298


>gi|56697036|ref|YP_167398.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678773|gb|AAV95439.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 307

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 119/284 (41%), Gaps = 8/284 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    L  F +    GS   AA +  ++QS++S+QI  LET +G +L +R ARG+  T 
Sbjct: 1   MDRLTLLETFAIALDEGSLNRAARRRGITQSAVSQQIKQLETSIGQQLLHRTARGIHATR 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  ++     +         EL +     SG  RI+ +  LG++++   L E    +PD
Sbjct: 61  AGDLVYVHAQTLLSGYNRMTAELDQLENSVSGTFRISVSSFLGRSVIGPMLIEMNAAHPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I + L+++ +D+  +  D AIR  + +  +    RK+  +     A P YL     P 
Sbjct: 121 LNIVMRLEDRLVDVVREGYDLAIRTGR-LGDTDGFGRKISALDTVLVATPAYLDRVGRPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +++ + + I   +   K       L    R    P       +    IM+    GSG 
Sbjct: 180 QPEDMKRLDFIQHHEDQTKGFFP---LRRDGREYPAPVRVGFTADDPDLIMRAVASGSGY 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
             +P ++V D   +  L  ++     P+  V+  YP       +
Sbjct: 237 TRVPRFMVADEIASGALEVVLPAYRPPNKDVFAVYPSRHTPDRR 280


>gi|304392465|ref|ZP_07374406.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
 gi|303295569|gb|EFL89928.1| LysR family transcriptional regulator [Ahrensia sp. R2A130]
          Length = 293

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +FDW++ R F V A  GS + AA  L L+Q ++SRQ++GLE  +G+ LF R +R L LT+
Sbjct: 7   AFDWNQARAFLVTAEEGSLSAAARALRLTQPTLSRQVAGLEEALGVTLFERTSRALLLTQ 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L      +        +     S   +GK+ IA T  +   +L   LKE     PD
Sbjct: 67  AGTELLEHFRGMGDAANRIALTATGQSQAVTGKVVIAATNGMATYVLPRVLKELRTKAPD 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +QI++I  N+  D+    AD AIR R+P Q  +L  R+L  +    YA+  YL     P 
Sbjct: 127 LQIEIIASNETSDLRRREADIAIRHRRP-QDEALFARRLRDMTGQLYASTPYLDEVGRPS 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + ++L + N + F        +    +A+    +     + L  +  LS+      G GI
Sbjct: 186 TAEDLARMNFVGFD----APEQRLGLMASRGIELTTANFNFLTSSVTLSV-ALIRQGFGI 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +LP  I +  P L              +      L+   +++   + I  
Sbjct: 241 GILPVEIGEAYPELENPFPAFEPIEIETWLVAHRELRTNPRIRLVFDLIAE 291


>gi|304397693|ref|ZP_07379570.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304354865|gb|EFM19235.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 294

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 9/286 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R F  +AR  +   A++ L++ Q+++ R+I+  E+ +  +LF R  R   L+E 
Sbjct: 1   MNWDDVRFFLALARQKTLRGASKSLNVDQATVGRRIAAFESALSSRLFIRTPRAFMLSEF 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++    S +   ++    +       P+G +RIA+T  L    +   ++     YPDI
Sbjct: 61  GEQVMAEASAMESAMQAMSRKAACGDSIPAGNVRIASTDTLATVFVIPAIQRLREQYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+      DIS    D AIR  +P  S  LI ++L TI M  YA+  Y     EP  
Sbjct: 121 TVTLLTGIGFSDISYRSVDIAIRGARP-DSEELIVKRLATIDMGLYASQRYFDRLGEPQQ 179

Query: 183 IQELDKHNLITFG-DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              L  H L+ F  D++P+  ++    A   + +       L+ N+ L +      G GI
Sbjct: 180 ESGLTDHQLVMFPADMVPRHRQNLCGFAVNSQQV------VLECNTQLLMQSAIKRGIGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            LL  ++   +P L+ +  +   P   ++      L+   +++A  
Sbjct: 234 GLLSTFLANCDPQLIPVFPEKRDP-VDIWLVLHPDLQKVARIRAVI 278


>gi|56696827|ref|YP_167189.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678564|gb|AAV95230.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 303

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 124/295 (42%), Gaps = 13/295 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               LR    + R GS +  AE+L L+QS++SRQ+  LE ++G++L  R  + L+LT   
Sbjct: 10  SLSSLRALEALDRLGSASAVAEELALTQSAVSRQLQTLEGQMGVELIRRDRKRLSLTPAA 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                   E        Q  L+       G + +A     G   L   L EF  L+PDI 
Sbjct: 70  QDYVTEIRE--ALNRIAQASLRLQVAPAGGTVNLAILPTFGMRWLMPRLPEFSRLHPDIT 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLS 182
           I +    +  + + +  D A+   +P    +   R L+         AP  L     P S
Sbjct: 128 INMTTRLRPFNFASEPFDAALHFGEPDWPGT--DRLLLRAERVLPVCAPGLLP-HGAPKS 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +  L+    +  +     +W A +     E     L  + + +I Q  + G G+A
Sbjct: 185 PADLLRLPLLH---IQTRPRAWQDWFAQMGVTCPETLPGTLY-DQFATIGQAALHGLGVA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP+Y+V+ +     LV    D +      Y  +P A  N   L+AFR+++  +A
Sbjct: 241 LLPNYVVEQDLATGRLVAAYPDAVETLGAYYLVWPRARGNDPSLRAFRHWLAAQA 295


>gi|222110541|ref|YP_002552805.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221729985|gb|ACM32805.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 305

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 121/291 (41%), Gaps = 10/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   AR  S + AAE+LHL+QS++SRQ+  LE ++G  LF R  + + LT+ G   
Sbjct: 12  DLLAFEAAARHASISRAAEELHLTQSAVSRQVRQLEAQLGQALFTRVRQRVVLTDAGRLY 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 V  +L     +         G L +A    LG   L   L  F  L+P++ + L
Sbjct: 72  AADVRAVLQQLGAATQKAMAL-ADGGGLLHLAVLPTLGARWLVPRLPAFAALHPELTVNL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +  D + +  D AI    P   +  +   L+   +    +P      R   +  ++
Sbjct: 131 SARGEPFDFAQEPFDAAIHYGAP-HWAGAVCDYLMHEEVVPVCSPALRTRHR-IETPADV 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               L+       + +   +W      P  +  +   +   +  I Q  + G G+ALLP 
Sbjct: 189 AGLTLLH---QTTRPVLWADWFEQEGVPAPQA-LRGPRFEQFAMIAQAAISGLGVALLPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +++++   +  LV +   V+T S   Y   P A   +  +KAFR ++   A
Sbjct: 245 FLMEEELASGALVELPGGVLTSSDAYYLVVPLARAESAGVKAFRAWLREVA 295


>gi|182678409|ref|YP_001832555.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634292|gb|ACB95066.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 306

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 9/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  +FT A+ +L+++QS++S QI  LE   G+KLF R  R L LT +G+ L 
Sbjct: 10  LRAFEAAARHPTFTAASAELNVTQSAVSHQIQYLEELWGMKLFER-GRTLKLTTEGNALA 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  +    L+ T   L+    +    LRI+ T       L   L       PD+Q+ + 
Sbjct: 69  PIIRQFLVSLDATLAGLRRQRDRHP--LRISLTQSFASRWLLPRLPSIEASQPDLQLWIE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  I      AD A+RL    Q S L    L+  ++   A+   L     P +  +L 
Sbjct: 127 TTDHPIGFGQGDADIAVRLGTG-QYSGLFAELLLREYIFPVASKQLLDRLGMPNTPADLL 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           ++ L+ F        +   W       +          ++ ++I +  + G GIAL+   
Sbjct: 186 RYPLL-FRAGPDLVPKWEYWFERAGVDVSLAHSGTYYPDTNMTI-EAALAGYGIALVRSG 243

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            V+    +  L+R++          YF  P+  +    + +F+ +I  +A+  +
Sbjct: 244 HVEKELRDGLLIRLLTVRYPSPLAYYFVCPKGRERLPAIASFKEWIVQEAQQAQ 297


>gi|323495945|ref|ZP_08101011.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323318980|gb|EGA71925.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 295

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +++ + S+IS+++  LE  +G++L  R  R +T TE
Sbjct: 1   MDWIQSVHSYIRVVDEGSFNGAARKMNTTSSAISKRVHWLEERIGVQLLKRTTRTVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  S  P+G L+I  T+ +G   L   L +FL +YPD
Sbjct: 61  AGALFYERAKMQLEDWQSIVDETRSVSQSPAGLLKIGATLAVGSKFLVQYLNDFLQMYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQLI       +     D  I R  + + S S     L       YA+P YL+   EP
Sbjct: 121 IRIQLITT-TPGQLPELSLDLFISRELEQLNSLSFKATPLFEHRAGFYASPQYLQQHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++EL +HN + +G+   + +       T+ +             +  ++        G
Sbjct: 180 KTVEELTQHNALIWGERPQREI-------TLSKSKRIMLSGNFATTNPEAMFYAAKNSMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I +  D ++KD      L RI+ ++     TVY  YP+      + K F +++  + 
Sbjct: 233 ILVTNDVMIKDELNTGTLKRILPEITADEATVYAYYPKLDYQHTRTKLFLDYLKERL 289


>gi|293394372|ref|ZP_06638672.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291423350|gb|EFE96579.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 302

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 136/292 (46%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L +F  +  SGS   AA +L LS S++S+ ++ LE ++G +L  R  R + LTEQG
Sbjct: 6   TLSQLSIFVRIIESGSLAKAARELGLSPSAVSKSLAKLEQQLGTQLITRTTRNIFLTEQG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             +      +  + E    ++Q    +P G+LR++ ++  G  +L   +  +   +P ++
Sbjct: 66  EAVFNRAIMLIEECEDMFAQVQ-RPSEPEGQLRLSCSVAYGSKILPDFISAYQRRFPKVK 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + L++  I++S    D A+R+ + +  +      L  I+     +PHYL       + 
Sbjct: 125 IHVELNDNIINLSETPFDLALRITRQLAETENHV-LLNKINWIYCCSPHYLAGKPPIKTP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L +H  IT     P      NW  A  +  +  P  SCL  NS L+++   +  +G++
Sbjct: 184 ADLTRHRCIT----NPVMAYHDNWVFADHNGEVMVPVDSCLTSNSSLTLLSMLLNHNGVS 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY+     +  +LV ++ +     S  +Y    ++       + F  ++
Sbjct: 240 CLPDYLATIYINKGDLVHLLPEYHAGFSHYLYAIDKKSRYVNPLTRTFIEYL 291


>gi|15595645|ref|NP_249139.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|313111927|ref|ZP_07797716.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|9946307|gb|AAG03837.1|AE004482_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|310884218|gb|EFQ42812.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 302

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 124/296 (41%), Gaps = 13/296 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   AR  SFT AAE+L L+QS+I RQI+ LE  +G++LF R  RG+ LTE G   
Sbjct: 10  ALVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGVKLTEAGLSY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +     +E   + +        G + +A     G   L   LK F  L+P++ I L
Sbjct: 70  SRRVAVRLDAVERDTLAVMGHQG--GGAIELAVVPTFGTQWLLPRLKRFQRLHPEVTINL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +    +    D A+        S  +   L+  +     +P  L   R  LS +++
Sbjct: 128 TNRTRPFLFADTEFDAALYFGDA-DWSGTVSHFLMRENPVPVCSPELLGGRRT-LSAEQV 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
               L+          + F+     V   +  PR           + Q  + G G+AL+P
Sbjct: 186 AGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFS-----MLAQAAMHGMGVALIP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            ++++D   +  L+  M+         Y   PE    +  L AFR+++  +AR ++
Sbjct: 241 PFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEARQYR 296


>gi|322835591|ref|YP_004215617.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170792|gb|ADW76490.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 323

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 122/300 (40%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L     VA++G F  AA     + S +S  +   E ++GI+LF+R  R + LT
Sbjct: 1   MPMDIALLHAVVEVAKAGGFREAARVTGSNASRLSDAVRRAEQQLGIRLFHRTTRAVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L        ++++     L      P G LR+   +   + +L   + EFL  YP
Sbjct: 61  EAGRALLERLLPAMNEVDAALDALNRYRNTPGGTLRLNVPVSATRLVLPALVPEFLRRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DIQ+++I ++   D+  D  D  IR  + ++   ++   +        A A+P YL    
Sbjct: 121 DIQLEIIAESNVQDVFRDGCDAGIRYDERLEQD-MVAIPIGPRRQRYAAAASPDYLNVHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN---SYLSIMQYC 235
            P   ++L +H  +  G      M D+         +       L V+   +    ++  
Sbjct: 180 RPSHPRDLIQHRCLR-GRYASGIMPDWE-FEHEGESLSVQVSGPLVVSVGGAVDLAVETA 237

Query: 236 VLGSGIALLP-DYI--VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           V G+GI  L  +++     +  L  I++         Y  Y +       L+AF +F+  
Sbjct: 238 VAGAGIIYLFEEWLRPAIASGKLEAILQPWWLSFSGPYLYYNDRRLIPAPLQAFIDFVRE 297


>gi|161520118|ref|YP_001583545.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353703|ref|YP_001949330.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344168|gb|ABX17253.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337725|dbj|BAG46794.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 310

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 109/289 (37%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 11  QALRAFESAARLASFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGVTLTADGEC 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 71  LYEAVRLSLDTLRGATATLRARRE--HGTLTIVTDFGFATYWLMPRLAGLKRVMPDVDVR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+AD AI        S    R L    +    +P +          + 
Sbjct: 129 VVTS-QDYDAQRDHADIAILFGDGHWPSCTAAR-LFAESVTPVCSPAFRDAHPHVSRPEH 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    +           +     +  NSY  ++   +LG G+AL  
Sbjct: 187 LAALPLLHVQPTRPERWLSWAGWFDAHGLDAQAAARGVTFNSYALVIHAALLGEGVALGW 246

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +      LV++++  +  S   +   P           FR ++ 
Sbjct: 247 SPLVDELVAAGQLVKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 295


>gi|255745467|ref|ZP_05419415.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262151281|ref|ZP_06028416.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|255736542|gb|EET91939.1| transcriptional regulator LysR family [Vibrio cholera CIRS 101]
 gi|262030897|gb|EEY49526.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
          Length = 253

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 121/254 (47%), Gaps = 9/254 (3%)

Query: 41  LETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATT 100
           +E  + ++L  RHAR LTLTE G + ++  S +  +L +   E+ +     SG++RI+  
Sbjct: 1   MEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAP 60

Query: 101 IDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160
            +L + ++      F+  YPDI I+L++ N+  D+     D   R+  P + SSLI RK+
Sbjct: 61  SNLTKRMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRVG-PQRDSSLIARKI 119

Query: 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI 220
             +     A+P YL +  +P   +EL +H L+         +  +    +    +     
Sbjct: 120 GEVKDILVASPQYLSSHPQPTHAEELHQHQLL-----KGYPLLKWQLTNSQGETVVNSDR 174

Query: 221 SCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEAL 277
              Q ++   +   C  G GI L+PD +++   ++ +LV+++ D  +    +Y  Y    
Sbjct: 175 GRFQASALNVVRSACSEGLGITLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKD 234

Query: 278 KNTGKLKAFRNFIF 291
               K++ F +F+ 
Sbjct: 235 HQPEKVRLFIDFVI 248


>gi|186470369|ref|YP_001861687.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196678|gb|ACC74641.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 316

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 123/301 (40%), Gaps = 14/301 (4%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D    +  F  V     F  AA +L++S S ISR ++ LE  +G++L  R  R + +T
Sbjct: 15  DMDRLQAMTTFVTVVEMEGFASAARKLNVSPSVISRVMTELEEHLGVRLLTRTTRVVRMT 74

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+        +   +E  ++     +  P G+L +   +  G+  +    +++L  YP
Sbjct: 75  DAGATFFEHCRRILADVEAAELSAVGVNTTPRGQLTVTAPVLFGKMYVTPIAQDYLTRYP 134

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + +     ++ +++  + AD AIR+ + + +SSL    +  +     A+P YL+    P
Sbjct: 135 AVSLNCWFMDRVVNLVDEGADVAIRIGE-LPNSSLQAIAVGHVRRVLCASPGYLETHGVP 193

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS----YLSIMQYCV 236
               +L  H  I    L P     F+  A       +PR+     +S     ++ +    
Sbjct: 194 QHPDDLASHIAIQATGLTPAPEWRFHVDAKPLTVPIQPRLVTTTNDSAIAAAIAGLGLVR 253

Query: 237 LGSGIALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                 +L   I ++  N  L  ++ D    +  V+  + E      K++AF +      
Sbjct: 254 ------VLSYQIAEELANGTLRIVLADCEQATLPVHVMHREGKHANQKVRAFLDLAIETL 307

Query: 295 R 295
           R
Sbjct: 308 R 308


>gi|126175352|ref|YP_001051501.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125998557|gb|ABN62632.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 299

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 130/300 (43%), Gaps = 20/300 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  +  +GSF+ AA++L +  +++SR+++ LE ++  +LF R  R L LTE+G
Sbjct: 8   ELQLVYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +    V  + +         S KP G LRIA  I +   +    L EF  LYPDI+
Sbjct: 68  LALFQRYQSVVAQFDEL---SGAGSDKPEGTLRIAAPISIISIVFIQALNEFGRLYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   N+ +D+     D AI +      SS +   L  +    +A P YL    +    
Sbjct: 125 LHISQSNELVDLIDKGIDVAI-VGGAQPDSSWVSSTLGELDYCLFATPEYLAQAPKLEHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGS 239
            +L+ H LI       K    FNW   +  P GE       + L +      +Q  +   
Sbjct: 184 DDLEAHQLI-------KVWPLFNW--HLKHPSGESFYFNGPTKLTLTDLHGAIQATLGHG 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI   P+  VK       L  ++ + I     +   Y +  +   K++ F  F+  KA +
Sbjct: 235 GILYGPELFVKQQIKEGKLNVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPE 294


>gi|260574066|ref|ZP_05842071.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
 gi|259023532|gb|EEW26823.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
          Length = 305

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 115/290 (39%), Gaps = 12/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F  V R+GS   AA  L L+Q ++SR +  LE ++G+ LF R  R L  TE      
Sbjct: 14  LAAFEAVCRTGSTLAAARDLDLTQGAVSRLVQNLEAQLGVALFLRQGRRLVPTESALAYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +     +    + ++ ++    G L ++     G   L   L  FL  +P + I L 
Sbjct: 74  REVARAMDMISRGAMRVRSATG--GGTLALSILPTFGTRWLAPRLPGFLAAHPGVTINLG 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              K  D + +  D AI         +    KL    + A  AP YL          +L 
Sbjct: 132 TRLKPFDFAEEGFDAAIHFGDE-SWPNAGSVKLFDEALVACCAPAYLATHPV-AQASDLI 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              L+    L  +     NW          P+   +  + +  ++Q  + G G+ALLP++
Sbjct: 190 GLPLL---QLETRPNAWGNWFHRHGVAGAVPQ--GMLFDQFAPMIQAAIYGMGVALLPEF 244

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + +    +  LV    D +  + + Y  +P        L AFR+++  + 
Sbjct: 245 LAQAELADGRLVNAWGDPVPGTGSYYLVWPGIAAGYPPLVAFRDWLVAEV 294


>gi|134293960|ref|YP_001117696.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137117|gb|ABO58231.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 299

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 14/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F  AA++L ++Q ++++Q+  LE  V ++LF R  RGL LT  G 
Sbjct: 13  LNALRAFEAAARHLNFRLAADELGVTQGAVAQQVRHLEDAVEVQLFRRLPRGLALTRDGL 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           +    + L +        L ++TT       L   L +F   +PDI++
Sbjct: 73  EYFSSVQRALQLIADATLALGQRPAA----LTVSTTPSFASKWLIPRLADFGRQHPDIEV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++ D +      D  D AIRL KP   + L  + L  + + A A+P  L       SI 
Sbjct: 129 RVVADERLASFRADGVDIAIRLGKPPFPAGLTAQLLSPLDVFAVASPTLLDGAPPIRSID 188

Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H L+    DL P+ ++       VD   G       + +  L  +   + G GIAL
Sbjct: 189 DLSTHVLLHDAHDLWPEFVDKLGGRGRVDATKGP------RFSQSLLAIDAAIAGQGIAL 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             + +V+ +     L R+ +     S   Y  +P A   +  L+A R ++F +
Sbjct: 243 TSEPLVERDIAEGRLRRVFDFSFPMSLGFYVVFPNANVQSDTLEAMRRWLFAQ 295


>gi|170750804|ref|YP_001757064.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657326|gb|ACB26381.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 295

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 118/295 (40%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR GSFT AA++L ++  ++SR +  LE  +G+ LF RH R + LTE GS
Sbjct: 8   LNALKAFEAAARHGSFTRAADELRVTHGAVSRHVQTLEGWLGLPLFERHNRRVVLTEAGS 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                T              +++       LR+          L   L  F    P I++
Sbjct: 68  AY--ATEIGAALDRIALATARQAERGRPRLLRVNALATFTLRWLIPRLSGFQRANPSIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N  +    +  D AIR   P           ++       +P  L+     +  +
Sbjct: 126 RLTTSNVPLASVAEPFDVAIR-GGPDSRPGHRAAPFLSERRIPVCSPDLLRRLPLRV-PE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+     +P+   D  WL     P   PR + + +  +   +Q  + G G+A+ 
Sbjct: 184 DLRQHTLLH-AATLPRVWPD--WLRAAGVPDLAPR-ATVTLEHFYLTLQAALDGLGVAMG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P+ ++ D+     L         P+ + Y   PE       ++AF  ++   AR 
Sbjct: 240 PERLIADDVAAGRLTLPFAGPALPARSYYAYVPEPRAEDPAVRAFCGWLAEAARQ 294


>gi|298486784|ref|ZP_07004840.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158651|gb|EFH99715.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 319

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 116/292 (39%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G++L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECLGFAPASRKLGIPKSKLSRRIAGLEERLGVRLIHRSTRTFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +  S  +P G++ I+    L        +  F   +P +
Sbjct: 62  GRDYYAHCVAMLVEAEAAEEAILRSKSEPQGRVAISCPPALAAMGFNETIARFAADHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+Q+   N+ +D   +  D A+R+R  P++   L+ + L        A P          
Sbjct: 122 QVQVESTNRRVDPLTENIDIALRVRFPPLEDDGLVVKLLGHSAQRLVARPDLAARLSATS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++ L     +      P    +  WL   T            L  +    ++Q  + G 
Sbjct: 182 TLEALSSLPSL----DTPSASHEHRWLLETTSGHYAEIRHTPRLISSDLDMMLQAALQGV 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A LP+ IV++   +  LV +          V+  +         ++   +
Sbjct: 238 GVAQLPELIVREALQDGRLVELFSQHRPKCGIVHAVFASRRGLLPAVRGLLD 289


>gi|163738198|ref|ZP_02145614.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161388814|gb|EDQ13167.1| transcriptional regulator, LysR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 292

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R +  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHVDAIEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+      SG+L + T++     LL   L EF   +P++ 
Sbjct: 63  QDLLRVAQATDDQFGQLVGRLKGHGDAVSGEL-VVTSLSSMSTLLVPALTEFQRQHPELV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+ +  ++   +    A  AIR   P +    + +  +      YA+  Y++       +
Sbjct: 122 IRFLTGSRLFRLEYGEAHVAIRAGSPPEQPDNVVQPFMRQQHGLYASASYIERFGPLKGL 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ++  H  I   D+  +      WL    R          +  + +S+ +  + G+GI  
Sbjct: 182 DDMSNHRFICNDDIDSRAPYS-RWL----RAHAPESALSFRCVNAVSMQEALLAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           L  +  + +P L ++ME +   +  ++      L  T K+++F +F+  +A+ W
Sbjct: 237 LTRWEAERHPGLTQMMEPLPEWAGELWLVTHVDLHRTTKVQSFLSFLKAEAKAW 290


>gi|194366146|ref|YP_002028756.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348950|gb|ACF52073.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 298

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 126/293 (43%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  +F  V  +GS T AA++L LS++ +S  +  LE E+G+ L  R  R L LT  G
Sbjct: 3   SLDRFDIFRAVVEAGSLTAAADRLGLSRAVVSFNLKRLEQELGVTLLLRSTRHLALTGAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +   +     +      +       G LR+ TT +  Q  L   L+ F   +P +Q
Sbjct: 63  EQFLQHCVQALDAAQAAIDAARRDQQHLQGVLRLTTTPEYAQLRLIPALEAFRARHPALQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L       D+  +  D AIRL + +  S L   +L    + A AAP  L       + 
Sbjct: 123 LHLSTSPAPADLIPERFDLAIRLGR-LPDSGLHANELERHPLCAVAAPSLLARLPSADAA 181

Query: 184 QE---LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +   L     + +  L    +   +    +      P  + ++V+   S+  + V G+G
Sbjct: 182 DDPVQLGTLPRLGYPRLADVPVIAPDGSDALF--ATNPGNAVVRVDGASSLRAFAVAGAG 239

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + +LP  +++D+     L  ++     P  +VY  YP + + + K++   +F+
Sbjct: 240 VTVLPRLLIEDDLAQDRLRPVLRQHRFPQQSVYAVYPHSTQPSPKVRQLIDFL 292


>gi|110678640|ref|YP_681647.1| LysR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109454756|gb|ABG30961.1| transcriptional regulator, LysR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 292

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 127/297 (42%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  WD++R  + VAR G+ + AAE L +  +++ R +  LE  +G+KLF RHARG T T
Sbjct: 1   MN-SWDEVRTAFQVARMGTVSGAAEVLGVHHATVIRHVDALEARLGVKLFQRHARGYTAT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L RV      +       ++    + SG L + + IDL  + +   L  F   YP
Sbjct: 60  EAGQDLLRVAQATDDQFHQLAGRIKGRGNEVSGDLVVTSLIDL-SSRMVPVLVAFQKAYP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++ +   +   +    A  AIR          + ++     +  +A   Y+     P
Sbjct: 119 DVVVRYLTGERLFRLEYGEAHVAIRAGTVPDQPDNVVQEFRHHRVALFATTDYIAEHGRP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++    H  +       +   +  WL    R          + +   +  +  + G+G
Sbjct: 179 NGVKSFGDHRFVAHDADNSRAPFE-RWL----RQNVPASSIKFRSSDTRAQREAILDGAG 233

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  LP +  +++P LV +  +    S  ++      L  T K++ F NF+   A+DW
Sbjct: 234 IGFLPAFEAQNHPELVEVHPEQEGWSGPLWLVTHVDLHRTTKVQTFLNFVKEAAKDW 290


>gi|186472859|ref|YP_001860201.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195191|gb|ACC73155.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 308

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 132/297 (44%), Gaps = 11/297 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D LR+F  +A +GSF+ AA +  +S S+++  +  LE EVG +L  R  R L  T 
Sbjct: 1   MDRLDALRLFVEIAEAGSFSAAARKSTVSTSTVTLALQKLEEEVGARLIMRTTRRLAFTH 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +       V    +   + L+E     +G +R+  + D G+  +   L +F+ LYP 
Sbjct: 61  EGQRFLDDARRVLADWDAAILSLRE-DGPLNGPIRLTASTDFGRTRVVPLLDKFMSLYPQ 119

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+ L+L +  +D+   + D A+R   P+    L  R L+T      AAP Y     + +
Sbjct: 120 VQVSLLLTDGVVDLVDQHLDLALRHG-PLIDPRLKARLLLTGPRVVCAAPSYWAAHGKAM 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
              +L  HN +    L        NW   VD      R+S  +V +    + ++ V G G
Sbjct: 179 HPSQLSSHNCLI---LARPDAPFTNWPFVVDGKQIAVRVSGNRVASDGSVLREWAVNGYG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + L   + V     + +L   ++  I     ++  Y  A+  + ++    +FI  + 
Sbjct: 236 VILKNRWDVYHELISGSLETALDQYIGERVDLFAVYAGAV-PSRRVGTLIDFIAREL 291


>gi|115359231|ref|YP_776369.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284519|gb|ABI90035.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 308

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 110/289 (38%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 18  QALRAFESAARLQSFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGVTLTSDGQC 77

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 78  LYEAVRVSLDTLRGATATLRARRE--HGALTIVTDFGFATYWLMPRLAGLKHVMPDVDVR 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+AD AI        S    R L    +    +P +     +      
Sbjct: 136 VVTS-QDYDAQRDHADIAILFGDGHWPSCTAAR-LFPESVTPVCSPAFRAAHPDVARPDH 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    +                 +  NSY  ++   +LG G+AL  
Sbjct: 194 LHALPLLHVQPTRPERWLSWAGWFDAHGLDAPAAARGVTFNSYALVIHAALLGEGVALGW 253

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +   +  LV++++  +  S   +   P     T     FR ++ 
Sbjct: 254 SPLVDELVASGQLVKLVDAPVVTSRGYFLVRPPQRPETDATHVFRRWLL 302


>gi|241667526|ref|ZP_04755104.1| LysR family transcriptional regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876072|ref|ZP_05248782.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842093|gb|EET20507.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 300

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 131/295 (44%), Gaps = 13/295 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   +   +FY +   GSFT+ A  L +++++IS  I  LE E+ + L  R  R L+LT 
Sbjct: 8   NIPINLFEIFYKLVTYGSFTNTANALGITKAAISHSIKQLEKELKVDLLIRTTRRLSLTH 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      + +++E  +   +    +PSG L+I T+    +++L G +KE+   +  
Sbjct: 68  EGKLLFEYCKTLQNEIENIRDLAESFHSEPSGTLKINTSSFFAKSVLIGLIKEYSKRFSK 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ ++ +  +      D  + +        +I RK+ T      A+P YL++   P 
Sbjct: 128 VKIEVNIEERMPNFKTQETDIILGVNW-TPPEDIIARKIATTRYILCASPVYLQHNSIPS 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGS 239
           ++ +L  H  I               L  + +    P+    +   N+   I +  +   
Sbjct: 187 NLSDLANHKYILHKSRTTA-------LVNIKKNNLNPQTLPFELSANNIEFIKECVLNDL 239

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           GIA   +YIVKD   N  LV +++D       +Y  YP+      K+K F   + 
Sbjct: 240 GIAQFHEYIVKDEIQNGKLVELLKDEFLDQQDIYIYYPKNKFVQPKVKEFVKLVM 294


>gi|300936017|ref|ZP_07150965.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
 gi|300458809|gb|EFK22302.1| LysR substrate binding domain protein [Escherichia coli MS 21-1]
          Length = 298

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 129/290 (44%), Gaps = 7/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+    F ++A  GS++ AA +  +S+S +SR+++ LE  +G++L  R  R L LT  
Sbjct: 2   IDWNDYYYFALIADEGSYSQAALRAGVSKSVLSRRMAALEERLGVRLIQRTTRRLALTAA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +       +  + E  +  +  +   P G LR++  + + +      + EF+  +P  
Sbjct: 62  GEQFAVECRALVAQGERARAVVMAAQESPQGMLRVSAPVFMAETWFGEFVSEFIARWPLA 121

Query: 123 QIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++Q++  N+ +D+  +  D A +     +  S+L  +KL T      A+  +L    +  
Sbjct: 122 KVQMLAINRPVDMVAEGIDIALVTASGALADSTLHYKKLHTQADILVASSQWLARHPQVK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L++ + I     +         L   ++ I     + LQ N+   ++Q  + G+G+
Sbjct: 182 AIDDLNRVDGIL---RLTNNGGSQWQLINGEQEITLQPEARLQTNNIRVMLQAVLGGNGV 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           ALLP +  K    N  LVR+          +Y  +          + F +
Sbjct: 239 ALLPQFACKQGLANGELVRLFAPWSGIPRPLYALFAGQKGMPAIARYFMD 288


>gi|116695845|ref|YP_841421.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530344|emb|CAJ96691.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 298

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 115/293 (39%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S T AAE+LH++  ++SRQI  LE  +G++L +R  R ++LT  G 
Sbjct: 7   LNALRAFEAAARHLSITTAAEELHVTPGAVSRQIRALEDGLGVQLLHRGHRQISLTRTGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +R  +     L      L + + +   +L++          L   L  F    P I++
Sbjct: 67  DYYRAVTRAMDDLREATRRLSKRAKRK--QLKVRAYTTFAMRWLIPRLSSFHAANPGIEV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L      +D   +  D AIRL    + S +   +LV+  +    +P  L+   +     
Sbjct: 125 LLTASLDPVDFRKEDIDGAIRLGDG-KWSGVNTYRLVSNILVPVCSPGLLEGGPKVKKPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+     I +  +  +WL            S +   S          G G A+ 
Sbjct: 184 DLQHQTLLH---SIARPDDWAHWLKAARADKEVDARSGMTFQSSAMAYAAAAEGQGFAIA 240

Query: 245 PDYIVKDNPNLVRIMEDVITP----SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
             ++V  + +  R++           FT Y   P   K +  +  FR ++  +
Sbjct: 241 QRFLVAADLDAGRLVAPFRQTVDMGDFTYYLLTPADRKESPSMAVFRQWLLAQ 293


>gi|90023617|ref|YP_529444.1| transcriptional regulatory protein [Saccharophagus degradans 2-40]
 gi|89953217|gb|ABD83232.1| LysR, substrate-binding [Saccharophagus degradans 2-40]
          Length = 315

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 144/297 (48%), Gaps = 21/297 (7%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ +WD LR F  +AR GS + A+ +L ++ S+++R+I+ LE + G+KLF R   G  LT
Sbjct: 17  MN-NWDDLRYFLELARCGSLSGASRELGVNHSTVARRIAALEKKHGVKLFNRQPNGYQLT 75

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  +++   E+  + +T +  L     + SGKL +    +L  + +   L++F   YP
Sbjct: 76  EAGDVIYQHALEIEQQNQTVERLLYAGDTRLSGKLVVTMPHELANHCIIPYLQDFTGKYP 135

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++L++     ++S   AD A+R+  P    +L+ +KL  +    Y +          
Sbjct: 136 DVDLELVVSPGLKNLSAREADIAVRVT-PAPPETLVGQKLANLRHAVYFSK--------- 185

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              Q L +  +I          +D N  A   +     ++  L+V+   S+     +G G
Sbjct: 186 QHPQVLAEQKIII-------WRQDTNPPAWAQQHFPNAKV-VLKVDDLASMYAAVKVGIG 237

Query: 241 IALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA +P Y+     + ++ ++   +    + ++  +   L+ T +++AF+ F+  + +
Sbjct: 238 IARMPCYLPDSVLDADIFKLDLALTPSDWGIWVLHHADLRETARVRAFKQFLIERLQ 294


>gi|237799333|ref|ZP_04587794.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022189|gb|EGI02246.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 294

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 117/289 (40%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  G 
Sbjct: 4   IEDLRLAVTLSRCESLSAAARVLNVSPPALSMRLRKLETQLGITLANRDARRLSLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R ++ +  +LE      ++   +  G LR+      G+  +   L  F  L+P + +
Sbjct: 64  RFARESAHLLEQLEALPESFRQRDDRLVGTLRLVAPFGYGRQRIAPLLSRFAKLHPQLCL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L           +D  I +   +  S  I R L   H    A+P YL+    P + +
Sbjct: 124 HLDLRETPW-PDRHDSDAVIHIGN-LNDSLWIARPLAQNHRWLCASPAYLEQHGAPSTPE 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H  I   +           L+             L  N      ++   G GI L 
Sbjct: 182 ELSAHRCICIRENDEDVTLWH--LSKGQMKKTLRVQPALLSNDGSVARRWAEQGQGIVLR 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + V D     +L+R++ D    S  +    P     + +++A   F+
Sbjct: 240 SQWDVSDAIARGHLIRVLADWQLASAPINLLVPLRKHRSARVQALTEFL 288


>gi|152978977|ref|YP_001344606.1| LysR family transcriptional regulator [Actinobacillus succinogenes
           130Z]
 gi|150840700|gb|ABR74671.1| transcriptional regulator, LysR family [Actinobacillus succinogenes
           130Z]
          Length = 291

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 124/296 (41%), Gaps = 12/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  + ++G+FT A E+L +S+S++S+ I+ LE  + I+L  R  R ++ T +G 
Sbjct: 4   FDDLHLFITIVQAGTFTKAGEKLGVSKSALSQSIANLENRLNIRLLNRTTRSVSPTPEGL 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   +  Y  +      L E+    +G +RI  +    + ++   L   L  +P I +
Sbjct: 64  TLYNDIAAHYAAIGLGVERLIENQNSATGTVRINASEMAIETVILPKLGRLLADFPLISV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L  DN  +DI     D  +RL   +    +  +    +     A P YL +   P +I 
Sbjct: 124 ELHSDNNFVDIVSAGFDMGVRLGDEVAQGMVAVKISPPLTTAIVATPQYLHDKNLPKNIA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIAL 243
           +LD H LI              W   V+  + E    + +  N+    +Q      GIA 
Sbjct: 184 DLDNHRLINV--RFAPGRPPITWDFRVNGELVEYTSKAQIIANTNP--LQAVRNHLGIAF 239

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +    V+    +  LV ++          Y  YP    ++   +AF   +    R+
Sbjct: 240 VGLKQVEQELQSGELVELLGGYRMTYEPFYAYYPSRKHHS---RAF-ELVLEALRE 291


>gi|307611231|emb|CBX00882.1| hypothetical protein LPW_25851 [Legionella pneumophila 130b]
          Length = 302

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 133/297 (44%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     L+ F       SF+ AA++L++S S +S+QI+ LE E+ + L  R    LT+T
Sbjct: 1   MNI-LSCLKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLIRSTTRLTVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L+  + +++ +LE  ++      ++ +G +R+  T+      L     +F+  YP
Sbjct: 60  DSGHRLYEKSLQLFEQLEAVKVIATPDQLELNGVIRLYLTVTPAIPYLTKLSIQFMRQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ +I+ +   ++     D AI     ++ S L+ ++L +I    +A+P Y+     P
Sbjct: 120 KIEVDIIVGSDTKELYSSTFDLAISF-DDVKHSKLVCKRLFSIQRKVFASPGYISQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ EL KHN +       +    FN                 + N+   + Q  V   G
Sbjct: 179 QTLDELPKHNCLINTLYGLQNKWVFN-------KKIIHVSGNFKSNNAGVLKQAAVADVG 231

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   P + V +   N  L  ++    +P   +Y   P++  +  K+    NF   KA
Sbjct: 232 ILWAPYFSVYEEIKNGALTPVLPHESSPDINLYAICPKSTVDEQKINLLLNFFCEKA 288


>gi|238894323|ref|YP_002919057.1| putative LysR family regulatory protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546639|dbj|BAH62990.1| putative LysR-family bacterial regulatory protein [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 298

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 111/292 (38%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AA +L ++ S++S+QI+ LE  + + LF R  R L LT  G 
Sbjct: 6   LNALRCFEAAARLLSLKLAASELCVTPSAVSQQIARLEETLNVPLFIRTPRRLQLTAVGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R     +H++      LQ        K+ I+ T       L   L +F   YP I+I
Sbjct: 66  IYLRAVQPAFHQIAAATQRLQVPPGPE--KVAISCTSGFAIQWLLPRLADFERRYPQIEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+   N+ +D+  +  D A+R         L   +L+   +    +P  +   R      
Sbjct: 124 QIGTTNRRVDLLSEGIDFAVRHGVGGW-PELQAYRLLDDDLMPVCSPQLIAPRRTLTDAS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+         +    W   V       R   +  +S   + +    G G+ALL
Sbjct: 183 DLLQYPLLHDEHREDWAL----WCEAVGLAPHFARRGPVFTDSN-GVTEAAFAGMGMALL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               +        LV  +   I      +  Y E        + FR+++  +
Sbjct: 238 RRSFIAPALTQGRLVNPLAQPIACPLAYHLVYHETALLAPANRCFRDWLLGQ 289


>gi|170700433|ref|ZP_02891440.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134645|gb|EDT02966.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 305

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 122/294 (41%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AA++L ++  ++S+ I  LE  +G++LF R  RG+ LT  G 
Sbjct: 9   LNALRAFEAAARHLSVKSAAQELSVTPGAVSQMIRTLERHLGVQLFERVNRGILLTAAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +  ++   SG L ++ T       L   L +F    PDI +
Sbjct: 69  DYLPPVRNAFRQIADASQRVSGAAD--SGVLTVSVTPFFASAWLVPRLAQFRDACPDIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+   +   D + D  D AIR     +   L   +L+T+ + A AAP  +     P +  
Sbjct: 127 QIATSHALADFARDGIDVAIRHGLG-RYVGLCSERLLTVEIVALAAPALVARLGMPATPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L         D   K    +     +D   G PR      +    ++Q  + G G  LL
Sbjct: 186 DLAGWP--HLHDAERKGWHIWFDAQRID-DFGPPRGPAF--DDSGLLLQAILAGQGAGLL 240

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V++   +  LV++ +      F  Y  YP       K+ AFR +I   A+
Sbjct: 241 PAAMVRNELASGRLVQLADIAWLDDFAYYLVYPPHHAERTKVAAFRRWILDAAQ 294


>gi|162451498|ref|YP_001613865.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161162080|emb|CAN93385.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce
           56']
          Length = 319

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 120/291 (41%), Gaps = 4/291 (1%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   D L  F  V R  SFT AA  L ++ +++S++I  LE   G+ LF R  R + LT
Sbjct: 1   MTDALDGLTTFLAVGRHKSFTAAAAALGVTPTAVSQKIKLLERRCGVVLFQRTTRRVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L +        +E     L +   +PSG LRI      G  L+   + +    YP
Sbjct: 61  EPGESLFQRLRPAIADVEDALAALGDYRGRPSGNLRITAPRVSGAWLVAPLVAQMREAYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ I++ LD+  +D+     D  IRL   ++   +              +P YL     P
Sbjct: 121 ELSIEVSLDDAFVDLVASGFDAGIRLGDAVEKDMVRVPISSHSSWSIVGSPAYLAKAGRP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S ++L +H  I    L    +  +  L    + I       +  +    ++     G+G
Sbjct: 181 RSPEDLVRHRAIRQRLLASGVVYRWE-LERRGKTITVDVPGGVVTDDIGLMVALACAGAG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +A +PD  ++ +     L R++E  IT        +P   +   KL+A   
Sbjct: 240 LAYVPDQAIERDLSEGRLERVLEAFITKGPGFCLYFPARTQEQPKLRALIE 290


>gi|71734779|ref|YP_272483.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555332|gb|AAZ34543.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 254

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 105/253 (41%), Gaps = 9/253 (3%)

Query: 49  LFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLL 108
           +  R  R +++T+ G   ++    ++  L  +          P G L I+     G    
Sbjct: 1   MLMRTTRKISITDYGVYYYKTCRSIFDLLHESAEVASNVIHNPEGVLNISMPRSFGIFGF 60

Query: 109 QGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY 168
              L++F  ++P I++ + + +  +D S +  D A+RL   +  SSL+ R L    +   
Sbjct: 61  LPTLEKFYRIHPKIRVDVSISDSLVDFSENRFDAAVRLG-VLSDSSLVARPLRPYKLVLC 119

Query: 169 AAPHYLKNCREPLSIQELDKHNLIT-----FGDLIPKCMEDFNWLATVDRPIGEPRISCL 223
           A+P YL     P + ++L  H+ I      +          + +L      I     + +
Sbjct: 120 ASPAYLARKGRPATPKDLIVHDCIATYFDEYRTAWNTLQNTWEFLCADGEFIKVSVPARM 179

Query: 224 QVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT 280
           QVN    +    + G GIALLP+ IV  +     L+ ++ D   PS  +   Y +     
Sbjct: 180 QVNDAQGVCIMVLSGQGIALLPEIIVSAHLTEGRLIELLPDYQIPSRPMSLVYRKNSLMP 239

Query: 281 GKLKAFRNFIFLK 293
            KLKAF  F+  +
Sbjct: 240 FKLKAFIGFLMDE 252


>gi|115360739|ref|YP_777876.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115286067|gb|ABI91542.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 300

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 119/289 (41%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF RH R + LT+ G 
Sbjct: 8   LNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGRPLFERHNRRVELTDAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++     +      +    LR++         L   L  F + +P I++
Sbjct: 68  AYLAEVGASFDRIALATAQHFGQGQQR--VLRVSAPATFSLRWLVPKLSSFQVAHPAIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ I+   D  D  +R   P      +  + ++       AP  L+  R   +  
Sbjct: 126 RLSTSNEPIEKLRDKVDLIVR-GGPQAIDGYVAEEFLSEVRLPVCAPKLLEG-RPLRTPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WLA        PR S L +  +   +Q  + G G+A+ 
Sbjct: 184 DLAGFTLLHAATYPGMWPE---WLAAAGHANLVPRHS-LTLEHFYLTLQGALDGLGVAMG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V D+     LV+   +   P +  +     A  +   ++AF++++
Sbjct: 240 PIALVADDIAEGRLVQPFSEPALPPWRYFTYVAAARADDEAVRAFKDWL 288


>gi|94309928|ref|YP_583138.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353780|gb|ABF07869.1| Transcriptional regulator, LysR-family [Cupriavidus metallidurans
           CH34]
          Length = 300

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 123/294 (41%), Gaps = 11/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
              +L+ F   AR  SFT AA +LH++Q ++S+Q+  LE  +G++LF R  + L LT  G
Sbjct: 7   SLTELQAFEAAARHNSFTLAARELHVTQGAVSKQVRSLEAFLGVELFERVRQRLMLTGAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +         +++E   +EL     +  G L IA+   LG   L   L +F   +P++ 
Sbjct: 67  ERYLERIRPSLNEIEAASVELIARKGRG-GILHIASMPTLGAKWLIPRLPQFFARHPEVT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN--CREPL 181
           ++ +   +  D S    D AIR    +   SL    +    +     P  L         
Sbjct: 126 LEFVPHAQGYDFSQPDLDAAIRFGDGVWPGSL-ADYMTGREVLPVCRPGLLAQESGGAVA 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L ++ L+    +     +  + L    R       S  + + +  + Q  V G GI
Sbjct: 185 SAEGLLRYPLLHHTTVPEAWPDWLSELGVSTRQA----WSGARFDQFSLLTQAAVSGLGI 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           AL+P  ++++      LV      +      Y CYPE   +   L+ FR ++  
Sbjct: 241 ALIPRCLIEEEIATGTLVVAHAARVLAKKGYYLCYPEQKAHLPALQTFRAWLME 294


>gi|167743751|ref|ZP_02416525.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
          Length = 315

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 118/288 (40%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V R GS + AA  L L+Q ++ R ++ LE  + + LF R + GL  T+   
Sbjct: 7   WELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRMPLFTRSSSGLMPTDVAL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L      +    +              G +RI+ +  +G  +L   +      +P + +
Sbjct: 67  ALRAHAEAMESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHPALTV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L N+  D+    AD A+R+ +P Q+  LI R +  I +  +A   YL     P    
Sbjct: 127 ELALTNRVQDLLRREADIAVRMTRPGQTQ-LIARHIGGIELGLHAHRDYLARRGTPRDAG 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H LI          +        DR         L+ +S L+ +     G+GI   
Sbjct: 186 ELVRHALIGHDRPTAFIRQIAKSFPGFDRGAF-----ALRTDSDLAQLALIRCGAGIGAC 240

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + K +P LVR++         ++    E L+ + + +A  + +  
Sbjct: 241 QAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAE 288


>gi|254255144|ref|ZP_04948460.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124900881|gb|EAY71631.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 301

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 117/294 (39%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSFT AA++L ++  +ISR +  LET +G  LF RH R + LT  G 
Sbjct: 8   LNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLETWLGRPLFERHNRRVELTVVGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                               Q    +    LR++         L   L  F + +P I++
Sbjct: 68  AYL--AEVGASLDRIALATAQHFGPRQQHVLRVSAPATFSLRWLVPKLSSFQVAHPGIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ I+   D  D  +R   P      +  + ++       AP  L++ +   +  
Sbjct: 126 RLSTSNEPIEKLRDSVDVIVR-GGPQTVDGYVAEEFLSEIRLPVCAPKLLED-KPLRTPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WLA        PR S L +  +   +Q  + G G+A+ 
Sbjct: 184 DLAGFTLLHAATYPGMWPE---WLAAAGHADLVPRHS-LTLEHFYLTLQGALDGLGVAMG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V D+     LV+       P +  +     A    G ++AF+ ++ +  R
Sbjct: 240 PIALVADDIAEGRLVQPFSGPALPPWRYFTYVATARAQDGAVRAFKEWLKVAGR 293


>gi|172064021|ref|YP_001811672.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996538|gb|ACB67456.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 306

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 109/289 (37%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 18  QALRAFESAARLQSFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGVTLTSDGQC 77

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 78  LYEAVRVSLDTLRGATATLRARRE--HGALTIVTDFGFATYWLMPRLAGLKHVMPDVDVR 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+AD AI        S    R L    +    +P +     +      
Sbjct: 136 VVTS-QDYDAQRDHADIAILFGDGHWPSCTAAR-LFPESVTPVCSPGFRAAHPDVARPDH 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    +                 +  NSY  ++   +LG G+AL  
Sbjct: 194 LHALPLLHVQPTRPERWLSWAGWFDAHGLDAPAAARGVTFNSYALVIHAALLGEGVALGW 253

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +   +  LV++++  +  S   +   P           FR ++ 
Sbjct: 254 SPLVDELVASGQLVKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 302


>gi|269102278|ref|ZP_06154975.1| D-serine dehydratase transcriptional activator [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162176|gb|EEZ40672.1| D-serine dehydratase transcriptional activator [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 310

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 119/292 (40%), Gaps = 6/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F + A   SFT AAE L L+QS++S +I  LE  +G+KLF R  R LTLT +G 
Sbjct: 11  LSGLHCFLIAADQMSFTRAAETLCLTQSAVSHKIKNLEEILGVKLFIRQPRKLTLTPEGQ 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L  V +  ++  +         S + SG+L ++      Q  L   LK FL  YP +++
Sbjct: 71  HLKEVLA--HNFGDIALEIRDLKSTELSGELNVSVPPTFAQRWLVPRLKGFLDKYPSVRV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   N  +D   +  DCAI      + + L   KL+   M    +  Y          +
Sbjct: 129 HLRTRNDLVDFQTESFDCAIYFGHG-KYAGLHAVKLMDETMLPVCSHEYAVEHNLYHHPE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L    L+       +   +  W     R   E   +    +     +Q    G G+A+ 
Sbjct: 188 NLILCLLLHDAAPWARAGRNDEWQYWAKRFGVELPDNGCTFDRADLALQAAERGIGVAMG 247

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               + +      LV   +  +      Y    + +K++ +++AF++++  +
Sbjct: 248 RRSFITEQLKENRLVTPFDMSVFSPQHYYVVCRQDVKDSARIQAFQSWLMSE 299


>gi|293604098|ref|ZP_06686507.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292817493|gb|EFF76565.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 315

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 131/299 (43%), Gaps = 7/299 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +++F  VA++ SF+ AA  L L +S++SR+++ LE  VG+ L  R  R + LT  G
Sbjct: 10  SLHSMQLFAEVAKARSFSRAALVLGLPKSTLSRRVAQLERSVGLSLLNRSTRKVELTGAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    +  + E    ELQ  +  PSG LR+        +++      F   +P++ 
Sbjct: 70  ELYLERCLRIVQEAEVAHEELQALTATPSGLLRVNMPATFATDVMADIFMGFARRHPEVA 129

Query: 124 IQLILDN-KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
             + L + +  D   D  D  I++ + +  SS I R L  +H+H YA+  YL     P  
Sbjct: 130 FHVNLASLEHADRVADPCDLTIKIGQ-LPDSSRIARCLGALHVHLYASSAYLAAHGAPAH 188

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H  I F          +  +   ++    P  S   VN      +  +LG+GIA
Sbjct: 189 PAELAVHECIGFRAQANGAPTRWPLVRGTEQFSVAPG-SRFSVNEVGMARRLAMLGAGIA 247

Query: 243 LL--PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL-KARDWK 298
            L      ++ + NL R++ D     F V+    EA     + +AF +++    A+ W+
Sbjct: 248 ALGGDQTELEQSGNLRRVLPDWTVGPFPVHVVT-EARLLPARARAFVDYLIECLAQGWQ 305


>gi|70731612|ref|YP_261353.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345911|gb|AAY93517.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 316

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 132/299 (44%), Gaps = 17/299 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V  +GSF+ AA +  L+ S+++R+I  LE  VG  LF R    +  T  G  
Sbjct: 8   EQLGLFLDVLEAGSFSAAARRHPLTPSAVARRIDSLENAVGTTLFMRTTHAVVATAAGQA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L+  + E    S  P G +RI      G+  L   + +FL+LYP + +Q
Sbjct: 68  FAERARRIVAELQLARAEAVSLSHAPEGLIRIDAPAAFGRRHLAPAIADFLVLYPGLDVQ 127

Query: 126 LILDNKDIDIS---MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+    +   D  +R  + +  + ++   L +I   A A+P YLK+   P  
Sbjct: 128 LHLIDSFVDMQGSHLGKVDLVLRAGQRV-DTRMVATSLASIVRIACASPSYLKSRGTPSH 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGSG 240
             EL +H+ + +  L P     F W   +D  +   R   ++   N+  +++   + G G
Sbjct: 187 PAELSQHDGLDWDGLAP----LFAWRFELDGQVQSHRPQRIRLGANNAEALLSGALAGLG 242

Query: 241 IALLPDYIVKD---NPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA LP ++V +      LV +  +       +  +Y    E      + +    ++  +
Sbjct: 243 IAHLPTWLVSEYLLRGELVPLFCEGGLPKPETAGIYALRME-QHPNARSRLLLEYLKSR 300


>gi|300721867|ref|YP_003711145.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
 gi|297628362|emb|CBJ88927.1| putative transcriptional regulator [Xenorhabdus nematophila ATCC
           19061]
          Length = 311

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 127/291 (43%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L VF     +GSF+  A  + ++ SS+SR I  LE ++   L  R  R L +TE G ++
Sbjct: 13  ALLVFIKTVETGSFSATARAMSMTPSSVSRMIDRLEAQLNQHLLIRTTRMLQVTECGQEI 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +R    V    +      +  S  PSG LRI     LG+ LL   L  FL+ YPDI ++L
Sbjct: 73  YRYALNVISATDDLFARAENFSDVPSGILRITAPNTLGKILLTVFLPVFLINYPDINVEL 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +L +  ++I+ D  D A+R+ +     +++ R L+ I      + +Y K    P     L
Sbjct: 133 LLTDNIVNIAHDQFDLALRITES-PPENMVARALMPIEYVFVCSANYHKEL--PEDPFLL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HN+    +        F      +     PR   L +N+  +++   + G GIAL+P 
Sbjct: 190 SEHNIFFPEERQIHGGWIFKNKERTEPIFLTPR---LLINNSDAMLDAILQGVGIALMPT 246

Query: 247 YIVK---DNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFR-NFI 290
           +I      +  L++++ +           Y           K K F  +F+
Sbjct: 247 FIANSYISDGLLIKVLPEWKIDNPFPRQAYIITLPQRLLPLKTKVFIEDFM 297


>gi|289623873|ref|ZP_06456827.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646173|ref|ZP_06477516.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866745|gb|EGH01454.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 319

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 116/292 (39%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G++L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECLGFAPASRKLGIPKSKLSRRIAGLEERLGVRLIHRSTRTFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +  S  +P G++ I+    L        +  F   +P +
Sbjct: 62  GRDYYAHCVAMLVEAEAAEEAILRSKSEPQGRVAISCPPALAAMGFNDTIARFAADHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+Q+   N+ +D   +  D A+R+R  P++   L+ + L        A P          
Sbjct: 122 QVQVESTNRRVDPLTENIDIALRVRFPPLEDDGLVVKLLGHSAQRLVARPDLAARLSATS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++ L     +      P    +  WL   T            L  +    ++Q  + G 
Sbjct: 182 TLEALSTLPSL----DTPSSSHEHRWLLETTSGHYAEIRHTPRLISSDLDMMLQAALQGV 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A LP+ IV++   +  LV +          V+  +         ++   +
Sbjct: 238 GVAQLPELIVREALQDGRLVELFSQHRPKCGIVHAVFASRRGLLPAVRGLLD 289


>gi|107099432|ref|ZP_01363350.1| hypothetical protein PaerPA_01000444 [Pseudomonas aeruginosa PACS2]
 gi|116054177|ref|YP_788621.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889188|ref|YP_002438052.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254237321|ref|ZP_04930644.1| hypothetical protein PACG_03392 [Pseudomonas aeruginosa C3719]
 gi|296386945|ref|ZP_06876444.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|115589398|gb|ABJ15413.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126169252|gb|EAZ54763.1| hypothetical protein PACG_03392 [Pseudomonas aeruginosa C3719]
 gi|218769411|emb|CAW25171.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 302

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 124/296 (41%), Gaps = 13/296 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   AR  SFT AAE+L L+QS+I RQI+ LE  +G++LF R  RG+ LTE G   
Sbjct: 10  ALVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGVKLTEAGLSY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +     +E   + +        G + +A     G   L   LK F  L+P++ + L
Sbjct: 70  SRRVAVRLDAVERDTLAVMGHQG--GGAIELAVVPTFGTQWLLPRLKRFQRLHPEVTVNL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +    +    D A+        S  +   L+  +     +P  L   R  LS +++
Sbjct: 128 TNRTRPFLFADTEFDAALYFGDA-DWSGTVSHFLMRENPVPVCSPELLGGRRT-LSAEQV 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLA-TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
               L+          + F+     V   +  PR           + Q  + G G+AL+P
Sbjct: 186 AGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFS-----MLAQAAMHGMGVALIP 240

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            ++++D   +  L+  M+         Y   PE    +  L AFR+++  +AR ++
Sbjct: 241 PFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEARQYR 296


>gi|218675396|ref|ZP_03525065.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 304

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 130/295 (44%), Gaps = 12/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  +F+ AAE+L L+Q +ISRQI+ LE ++G+ LF R +RG+ LTE G+  
Sbjct: 14  ALAAFDSVARLSTFSAAAEELSLTQGAISRQIAALEEQLGVLLFERSSRGVILTEAGTDY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +    ++ +    LQ  + + + +L +A     G   L   +  F+  +P+I +  
Sbjct: 74  ARAIAGALAEIRSA--SLQAMTKQHNDQLNLAILPTFGTRWLMPRIPRFVARHPEITLNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   D  D AI + +P          L+   +   A+P +L++    L  ++L
Sbjct: 132 ATRIGVFDFDRDDIDMAIHIGQP-DWPGAESTFLMEEMVAPVASPSFLRSH-PILKAEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L+            F  L     P        ++   + ++ Q C+ G G+AL+P 
Sbjct: 190 LRLPLLQMASRPGAWSHFFESLQVNGTPS-----QAMRFEQFSNVAQACIAGLGLALMPL 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +++     N  LV+     +      Y   P + K+   + AFR ++  +   ++
Sbjct: 245 FLIDSELANGQLVQAFPHQVKSPSAYYAVAPLSRKDFRPVAAFRAWLLEEVAHYQ 299


>gi|170751867|ref|YP_001758127.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658389|gb|ACB27444.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 297

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 120/293 (40%), Gaps = 9/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D +    F  V   G F  A   LH  +S +SR+++ LE  +G +L  R +R   +TE G
Sbjct: 5   DLNDYVYFAEVVAHGGFAAAGRALHQPKSKLSRRVAALEARLGARLIERSSRRFRVTEVG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + E  +  + E+  +P G++R++    L  +++   ++ FL+ YP ++
Sbjct: 65  QGFYERCRAMMLEAERAEALVAEAQTEPHGRIRMSCPSGL-ADIVAARVRGFLVRYPKVR 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +QL++ ++ +D+  +  D A+R+R+ +   +SL  R L +      AAP   +       
Sbjct: 124 LQLVVTDRPVDLIEERIDVALRVRRDLTSDASLTMRTLGSSRWILVAAPQVARGLGP--D 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I  L     +   D   +   ++         +       L    + ++      G G+A
Sbjct: 182 IAALGAVPTLGTRDDPGEA--EWRLEHRDGTVVTLRHEPRLTCGDFAALTDAAADGLGVA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            LPD+   D      LV +  D       V+  +         ++   + +  
Sbjct: 240 FLPDHACTDAVAAGRLVPVYPDWQGQPGIVHIVFTTRRGLPPAVRVLIDHLAA 292


>gi|163846877|ref|YP_001634921.1| LysR substrate-binding [Chloroflexus aurantiacus J-10-fl]
 gi|222524698|ref|YP_002569169.1| LysR family transcriptional regulator [Chloroflexus sp. Y-400-fl]
 gi|163668166|gb|ABY34532.1| LysR substrate-binding [Chloroflexus aurantiacus J-10-fl]
 gi|222448577|gb|ACM52843.1| transcriptional regulator, LysR family [Chloroflexus sp. Y-400-fl]
          Length = 301

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 123/297 (41%), Gaps = 8/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   LR F  VAR    T AA +LH++Q ++S+QIS LE E+GI LF R  R L LTE 
Sbjct: 1   MELRHLRYFEAVARHSHVTRAAAELHIAQPALSKQISQLERELGITLFDRVGRSLRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  ++E  +  + E     +G++ I     +G +LL   L  F   YP I
Sbjct: 61  GEALLPYARAILAQVEEARAAMAERIGLKAGRVTIGAPPTVGAHLLPPLLTIFHQRYPGI 120

Query: 123 QIQLILD--NKDIDISMDYA-DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            ++L        +D+      D A+ +  P+    L    L+   +    +  +    R 
Sbjct: 121 TLRLHEAGIQSLLDLLEAGITDLAV-VALPVTDEQLTVTPLLNEPLVLIVSTTHPLARRS 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            + + EL     I    L P   E         R  G    + L+     +++++   G 
Sbjct: 180 EVMMTELRHERWI----LSPSSYELREATLKACREAGFTPQTVLEGGETETLVRFVAAGL 235

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           G++L+P   V    ++VR+       + ++   +      +   +A R F+  + R 
Sbjct: 236 GVSLVPALAVAGCTDVVRLTVSDQHLTRSLGLVWRSDRTASPAARALREFLVNEVRQ 292


>gi|171316967|ref|ZP_02906174.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097891|gb|EDT42711.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 305

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 121/297 (40%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L+L +S +SR+I+ LE  +G++L  R  R  T+T+ G
Sbjct: 7   DLNDLYYFVQVVEHGGFAPAGRALNLPKSKLSRRIALLEARLGMRLIQRSTRRFTVTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +     +P G +R++  + L  +L+   +  F+   P ++
Sbjct: 67  QTYYAHCRAMLVEADAADEAIALLHEEPRGIVRVSCPVVLLDSLVGTMIAAFMAACPRVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S L  R L        A+P  L+    P  
Sbjct: 127 IHLEATNRRVDVVGEGIDVAIRVRPPPLEDSDLALRVLAERGQCLVASPALLRELGTPAV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +    +    +P+    +                 L     L++    V G G+ 
Sbjct: 187 PADLTRLP--SLDHGVPQAAHVWRLRGPDGAQAEIHHQPRLVTGGMLALRAAAVAGVGVV 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +V+D      LV ++ +       V+  +         ++A  +F+  +  +
Sbjct: 245 QLPTMMVRDEVARGELVTVLPNWAPRREIVHAVFASRRGLLPAVRALLDFLTERFAE 301


>gi|293606156|ref|ZP_06688520.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292815416|gb|EFF74533.1| LysR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 328

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/294 (19%), Positives = 117/294 (39%), Gaps = 5/294 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LR F  ++ + S   AA  L ++  ++++++  LE  +G++L  R  RG  LT++
Sbjct: 2   ITTDDLRFFLSLSATPSLAQAARALDVTPPAVTQRLHALEKRLGVRLVNRSGRGTALTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++  +L     EL       +G LR+   +  GQ  +   + +F     +I
Sbjct: 62  GRLLALRAGQICGELGDLADELAGRRGVVAGHLRVVAPLGFGQRYMAELVADFRKTSDNI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
              L L +    ++ D  D  + + + ++ S+L+   L        A+P YL     P  
Sbjct: 122 TASLTLSDGPPRLATDNWDVMVHIGE-LRDSTLVAYPLAPNRRILCASPAYLARHGAPAK 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H+ I   +   + +  + +       +G      L  N+  + +Q+ + G GI 
Sbjct: 181 PEDLRDHDCIALRE-NDEDVTLWRFKRGRGPAVGVRVAPVLSSNAGGAALQWALAGHGIV 239

Query: 243 LLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              ++ V ++     LV ++     P   V          + +   F   +   
Sbjct: 240 ARSEWDVAEHLQTRALVPLLAGWNLPDANVVALVKSRQDQSARTAGFLAHLRAA 293


>gi|295699701|ref|YP_003607594.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438914|gb|ADG18083.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002]
          Length = 303

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 118/296 (39%), Gaps = 5/296 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + + +F  +  S S + AA +L +++++IS+++  LE E G +L  R  R   LT+ 
Sbjct: 1   MDLNLIGLFVEIVESRSLSGAARKLGMTRANISQRLKLLERETGAQLLRRSTRSFELTQA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   L   +  +       SG++RI+     G+  +   L EF   +  I
Sbjct: 61  GHMLYDSGKRMLEDLHAARASIDSLGQTLSGRVRISVPTGFGRMFIGSKLLEFARAHESI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +  +N+  D+     D A+R+ +       + R +  I  H YA+  Y++      S
Sbjct: 121 KLDVTFNNRVEDLIAAEVDVALRITR-TPPLDCVARNICPIDWHLYASAEYMQAHGPIES 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +   +       +                      LQ + Y  + +    G G+ 
Sbjct: 180 PADLQRQTFVASPHPDRRVTMTLTHRHNEADWHDITIQPALQSSDYPFLTESVAQGLGVG 239

Query: 243 LLPDYI--VKDNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LLP YI     +  L+RI+       P  T+Y         +   +A  +++  + 
Sbjct: 240 LLPAYIEYAPASRGLMRILPQYRVAGPQNTLYIVTLPNRYPSAATQALIDYLRAEV 295


>gi|237808735|ref|YP_002893175.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
 gi|237500996|gb|ACQ93589.1| transcriptional regulator, LysR family [Tolumonas auensis DSM 9187]
          Length = 297

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 116/289 (40%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L+ F VVA   SFT AA QL +S+S++S  +  LE  +GI+L  R  R ++ TE G
Sbjct: 5   NLNDLQAFVVVAHERSFTRAAAQLGVSRSALSHSMQALEARLGIRLLTRTTRSVSTTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           SKL    +    +++     L E   KP+G +RI         +L   L   L  Y DI 
Sbjct: 65  SKLLNAIAPRLDEIKLELEALSEMRDKPAGTVRITAHDHAVATILWPRLLPLLKEYSDIH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+  +D    DIS    D  +R    +    +  R    + M    AP Y      P + 
Sbjct: 125 IEFTVDYGLTDISARQFDAGVRFGDQVDKDMVAVRIGPDLRMAVAGAPEYFTGRSLPTTP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L +H  I     +P     + W           R++     N+   ++Q  + G G+ 
Sbjct: 185 HDLTEHRGINL--RLPTHGGLYAWEFEKGGQQINVRVNGQTTFNNTFLMLQAALDGVGLT 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             P  IV+   D   L+ ++ED        +  Y    +    L     
Sbjct: 243 FSPLDIVQPHLDAGRLIPVLEDWWPVFPGYHLYYTSRHQLPPALALVIE 291


>gi|85703118|ref|ZP_01034222.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
 gi|85672046|gb|EAQ26903.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           217]
          Length = 303

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 117/292 (40%), Gaps = 11/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    + R GS T AA +L  +QS++SRQ+  LE ++G+ L  R  RG+ LT + +   
Sbjct: 14  LRALEALDRLGSATAAAAELSQTQSAVSRQLKTLEDQLGVGLIVRQGRGIHLTPEAADYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                     +  Q  ++ +     G L +A     G   L   L +F  L+P++ I L 
Sbjct: 74  DKIR--GALQQIAQASVKLTVNPVGGSLSLAILPTFGMRWLVPRLADFARLHPEVTINLS 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              K  +   +  D AI              +L T  + A A P +L       S + L 
Sbjct: 132 TRLKPFNFVTEPFDAAIHFGHS-DWLGTEALRLRTERVVAVATPEFLARQGPIKSAESLL 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+            F       + I   R++    + + +I Q  + G G+ALLPDY
Sbjct: 191 RLPLLQIETRPSAWPTWFE-----AQGISGARVTGTIYDQFSTITQAALHGLGVALLPDY 245

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + + +     L     D    S   Y  +P        L+ FR+++  +A D
Sbjct: 246 LAEQDLATGRLAIAWGDKTLISGAYYLVWPVQNGRDPALRKFRDWLAGQAED 297


>gi|262402608|ref|ZP_06079169.1| transcriptional regulator [Vibrio sp. RC586]
 gi|262351390|gb|EEZ00523.1| transcriptional regulator [Vibrio sp. RC586]
          Length = 253

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 121/254 (47%), Gaps = 9/254 (3%)

Query: 41  LETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATT 100
           +E  + ++L  RHAR LTLTE G + ++  S +  +L +   E+ +     SG++RI+  
Sbjct: 1   MEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGASGRIRISAP 60

Query: 101 IDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160
            +L + ++      F+  YPDI I+L++ N+  D+     D   R+  P + SSLI RK+
Sbjct: 61  SNLTKRMMMPMFNTFMRKYPDIHIELMMSNQADDLDPTEWDVIFRVG-PQRDSSLIARKI 119

Query: 161 VTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI 220
             +     A+P YL +  +P   +EL +H L+         +  +    +    I     
Sbjct: 120 GEVKDILVASPTYLADHPQPTHAEELHQHQLL-----KGYPLLKWQLTNSQGETIVNTDR 174

Query: 221 SCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEAL 277
              Q ++   +   C  G GI L+PD ++++   + +L++++ D  +    +Y  Y    
Sbjct: 175 GRFQASALNVVRSACSEGLGITLMPDVMLREFLSDGSLIQVLSDWSSNPRDIYMLYNHKD 234

Query: 278 KNTGKLKAFRNFIF 291
               K++ F +F+ 
Sbjct: 235 HQPEKVRLFIDFVI 248


>gi|77362164|ref|YP_341738.1| LysR family transcriptional regulator [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877075|emb|CAI89292.1| putative transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 280

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 140/275 (50%), Gaps = 14/275 (5%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79
            + AA+QL ++ S++S+QI  LE EVG+ LF R  R L+LTE G   ++   ++    E 
Sbjct: 1   MSLAAKQLGMTTSAVSQQIKTLEQEVGLNLFNRSPRSLSLTEAGDIYYQSCKKLLQTAEQ 60

Query: 80  TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139
           T+ +LQ  +  PSGKL++   +  G  LL   LK  + L+P + I+LIL ++ +D+  + 
Sbjct: 61  TKQKLQYLTGIPSGKLKLVAPVGFGAGLLSEPLKRLIELHPKLNIELILTDEPVDMLKEG 120

Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYA-APHYLKNCREPLSIQELDKHNLITFGDLI 198
           AD A+ +  P+  S+LI RKL          A H L        I++L++H  I    L 
Sbjct: 121 ADLALCIG-PLNDSNLIARKLAQWPYALCVNATHPLAIND--QCIEQLNQHAHIAHSHLN 177

Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNL 255
            +  +  +   T++ P        ++VN+  S++Q    G G A+LP+  V++   N  L
Sbjct: 178 YQLFKPNSAPYTLNAP-------RIKVNNMQSVIQLVCDGLGYAMLPEPEVRERIKNKEL 230

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            ++ +D    ++TVY   P+      K  A  + +
Sbjct: 231 KQLHKDWQRSNYTVYAVTPKRDFIAAKTYALLDIL 265


>gi|332285824|ref|YP_004417735.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330429777|gb|AEC21111.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 312

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 128/296 (43%), Gaps = 11/296 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S     LR F   AR GSF  AAE+L ++ +++S QI  LE + G+ LF R  R ++LT+
Sbjct: 10  SLPLSALRAFEAAARLGSFKAAAEELAVTPTAVSHQIRALEAQTGLALFDRQVRKVSLTD 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L+ V  + +   E T   L++   +    + I+ T       L   + +F   +PD
Sbjct: 70  AGAQLYPVLRDGFDAFEATLARLKQQRTRAL--VSISATNAFTVKWLVPRMADFRRKHPD 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL   +  +D+     D AIR  +      L    L T      A PH        +
Sbjct: 128 IDLQLQASDDLVDLRSTAVDIAIRYGRG-PYPGLAIEPLFTDRFAPMANPHL-----GVV 181

Query: 182 SIQELDKHNLITFGDLIPKCMED-FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           S ++L +  LI F    P+     +    T+ +    P+ S L+ +     +Q  V G G
Sbjct: 182 SPEDLARVPLIRFDWKQPQPENPTWERWFTIAQRRQPPQASQLRFSDEGHAIQAAVAGHG 241

Query: 241 IALLPDYIVKDNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           IAL+   ++ D      +++         T +        ++  ++A  +++  +A
Sbjct: 242 IALVSLALIADELEAGHLVQPFGPAIDGHTYHLAMYADRPSSAPVQAVADWLRTQA 297


>gi|167034564|ref|YP_001669795.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861052|gb|ABY99459.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 301

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 14/293 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D   +++ F  VA   SF  AA  L  S S+++R +  LE   G KL  R+A  +TL
Sbjct: 1   MALDMLREIQAFVSVAHKRSFVAAARALGRSPSAVTRAVQTLEDNAGSKLLNRNANAVTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L      +         EL   S    G +R A    LG+++L   L EF   +
Sbjct: 61  TEAGERLLPHAERLLDVQRDAADELAALSGSAQGWIRFAVPQLLGEHVLPQVLAEFSRCH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +   ++ +D      D  +R   P QSS LI   L     H YA+P YL     
Sbjct: 121 PQVTLDVQCSDEALDPLQGKFDFVVRGAFP-QSSELIGYPLWPYQRHLYASPAYLALAGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++L+ H LI      P+ ++ +++          PR   L++ S  ++    + G+
Sbjct: 180 PQHPEDLEGHTLILH--TAPRILKAWHFCRDGQITSLRPR-PRLRLGSGHAVYHSTLAGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLK 284
           GIA L  ++ +       LVR+       S +     ++  YP   +   +++
Sbjct: 237 GIARLAAWVGEAQVNVGRLVRVCPHYRLTSSSGQDPQMHAVYPAG-ELPARVR 288


>gi|54295218|ref|YP_127633.1| hypothetical protein lpl2301 [Legionella pneumophila str. Lens]
 gi|53755050|emb|CAH16541.1| hypothetical protein lpl2301 [Legionella pneumophila str. Lens]
          Length = 302

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 133/297 (44%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     L+ F       SF+ AA++L++S S +S+QI+ LE E+ + L  R    LT+T
Sbjct: 1   MNI-LSCLKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLVRSTTRLTVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L+  + +++ +LE  ++      ++ +G +R+  T+      L     +F+  YP
Sbjct: 60  DSGHRLYEKSLQLFEQLEAVKVIATPDQLELNGVIRLYLTVTPAIPYLTTLSIQFMRQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ +I+ +   ++     D AI     ++ S L+ + L +I    +A+P Y+     P
Sbjct: 120 KIEVDIIVGSDTKELYSSTFDLAISF-DDVKHSKLVCKMLFSIQRKVFASPAYIAQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ EL KHN +       +    FN                 + N+   + Q  V   G
Sbjct: 179 QTLDELPKHNCLINTLYGLQNKWVFN-------KKIIHVSGSFKSNNAGVLKQAAVADVG 231

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I  +P + V +   N  L  ++    +P   +Y   P++  +  K+    +F   KA
Sbjct: 232 ILWVPYFSVYEEIKNGALTPVLPHESSPEINLYAICPKSTVDEQKINLLLSFFCEKA 288


>gi|134293313|ref|YP_001117049.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136470|gb|ABO57584.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 319

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 133/294 (45%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG-LTLT 60
           S +WD LR F  VAR+   + AA++L +  ++++R+I  LET +G  LF +   G  TLT
Sbjct: 11  SLNWDDLRFFLEVARTQRASGAAKRLGVDYTTVARRIRALETAMGTLLFDKSRSGGFTLT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   +++   +L  +    SG +RI +T   G   L   L +F + +P
Sbjct: 71  AEGQRLVAYADAMETTVQSACDQLANTGHALSGHVRIGSTEGFGCFFLAPQLAQFRVAHP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+     +++    AD AI L +P +    +  KL    +  YA   YL N    
Sbjct: 131 HVTVDLLPVPHFVNLPKREADLAITLERP-ERGPYVVTKLCDYQLRLYATRDYLANHPPI 189

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  +L +H  I++ D +    E       V         + L+  S ++ +   + G  
Sbjct: 190 ASTDDLARHAFISYVDDLAFSSELLYLERAVPGA-----TAGLRTTSVIAQVFAALQGGA 244

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+LP ++    P LV ++   +  +   +    E L+   ++ A  +++   A
Sbjct: 245 LAILPCFMAATQPALVPVLPHDVVVTRCFWLTCREDLRKLRRVTALWDYLRAAA 298


>gi|330987333|gb|EGH85436.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 319

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 116/292 (39%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G++L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECLGFAPASRKLGIPKSKLSRRIAGLEERLGVRLIHRSTRTFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +  S  +P G++ I+    L        +  F   +P +
Sbjct: 62  GRDYYAHCVAMLVEAEAAEEAILRSKSEPQGRVAISCPPALAAMGFNETIARFAADHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+Q+   N+ +D   +  D A+R+R  P++   L+ + L        A P          
Sbjct: 122 QVQVESTNRRVDPLTENIDIALRVRFPPLEDDGLVVKLLGHSAQRLVARPDLAARLSATS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++ L     +      P    +  WL   T            L  +    ++Q  + G 
Sbjct: 182 TLEALSTLPSL----DTPSASHEHRWLLETTSGHYAEIRHTPRLISSDLDMMLQAALQGV 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A LP+ IV++   +  LV +          V+  +         ++   +
Sbjct: 238 GVAQLPELIVREALQDGRLVELFSQHRPKCGIVHAVFASRRGLLPAVRGLLD 289


>gi|72383804|ref|YP_293158.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72123147|gb|AAZ65301.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 307

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 6/289 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            FDWD LRVF   ARS S   A+  L +SQS+ISR+I  LE + G KLF R ++GL+LT 
Sbjct: 3   HFDWDNLRVFLAAARSQSTLEASHTLKMSQSTISRRIQRLERDTGSKLFERSSQGLSLTS 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++   L   +  +   ++  +G++R+ +T   G   L  +  +F   +P 
Sbjct: 63  AGHRLLEHVEKLESTLSAVETAVFSDTLALTGEIRLGSTEAFGTFFLAPHSAQFCSRHPA 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++   + +++S   AD ++ + +P  +S  +  KL    +  YA   YL       
Sbjct: 123 ITVDVLPMPRSLNLSKREADASVAIDRPSANS-FVTCKLSDYRLVPYATAEYLDKHPPIR 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L  H  I + D +    + F     +  P   P    L+  S ++  Q    G GI
Sbjct: 182 KLDDLAGHRWIDYVDDLVFSPQQFMLQKWI--PSCRP---FLRSTSAVAQAQAVKAGLGI 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP ++      LV +M D I  + T +   P   +   ++KA  +++
Sbjct: 237 AVLPCFLGSLIDGLVPVMLDEIHITRTFWLVAPPERREVARVKALWDYL 285


>gi|87121592|ref|ZP_01077480.1| transcriptional regulator [Marinomonas sp. MED121]
 gi|86163124|gb|EAQ64401.1| transcriptional regulator [Marinomonas sp. MED121]
          Length = 317

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 124/294 (42%), Gaps = 15/294 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD ++ F  ++RSGS    AE+  +S S+ISR+I  LE  +G KLF R+  G  +TE
Sbjct: 23  TINWDDVKFFLALSRSGSARSVAEEFGMSHSTISRRIDQLEKSLGSKLFNRNVSGYQMTE 82

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L     E    ++  +  L     K  G L + T   +   LL   L  F   +P 
Sbjct: 83  DGLALSHYAKEAEEAMKGAEQVLMGKDAKLVGNLHLTTPDVIANKLLMPELASFSQEFPQ 142

Query: 122 IQIQLILDNKDIDISMDYADCAIRL--RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           I + + + +   ++S   AD AIR   R  +   +LI RKL  +    YA P YL     
Sbjct: 143 INLNITVSSNRFNLSRYEADIAIRFIERGGVPPENLIGRKLSDVATCLYATPAYLAEHT- 201

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLG 238
                 L   + IT   L     +  +W+         P + C+   N  L  ++    G
Sbjct: 202 ------LQGES-ITARWLGWTAEKQPDWVL----KSPYPDVPCIHTLNQGLLHLEAVKAG 250

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            G+ + P ++      L+RI       ++ ++       +   +L+ F+ FI  
Sbjct: 251 MGMGMFPCFLADKCDELIRIPGAKPQLTYEIWLLSHPDYREVARLRRFKQFILE 304


>gi|332995519|gb|AEF05574.1| putative LysR family transcriptional regulator [Alteromonas sp.
           SN2]
          Length = 294

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 134/298 (44%), Gaps = 17/298 (5%)

Query: 1   MSFDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+      L++F  VA SGS + AA  LH++ S+IS+Q+  LE ++G+ LF R+ R L+L
Sbjct: 1   MNMKLLRSLQIFVEVAESGSMSIAARNLHMTVSAISQQLRKLEQDIGLSLFNRNTRNLSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G   +  + ++       Q  ++     PSGK+ I      G  LL   L++    +
Sbjct: 61  TEAGRIYYDTSKKMLDTAVEAQERIETLQDAPSGKVNIIAPEGFGGGLLSQPLQKLCEDF 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + L L ++  DI +  AD  +    P+  ++    +L T       +  +      
Sbjct: 121 PKINVSLTLTDQPTDIIVSGADLLLGFT-PVSDTNFSSLELATWRRILCVSADHPLAKSP 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
             S + L +++ I+   +         ++   D+    P   S ++++S  +++Q    G
Sbjct: 180 LESPEILQEYSYISHRHI-------EEYVMKHDKFDKVPLTSSRIELDSMQTLIQLTRDG 232

Query: 239 SGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR----NF 289
            G A+LP+  V+      ++ ++  D   P +TVY   P+      K+ A      ++
Sbjct: 233 LGYAVLPEPEVRHLLSEGSMKQLFTDWSLPDYTVYAVTPKRELVPAKISAAITCLQDW 290


>gi|229145007|ref|ZP_04273402.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-ST24]
 gi|228638456|gb|EEK94891.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-ST24]
          Length = 300

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 137/305 (44%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKVLLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  + +       L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKLNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++  +N   ++I  +  TP+  +   Y +        + F   +   
Sbjct: 237 GMGITVLPKPYIDFLQNNNIQAIKI--EKPTPTIEIGLIYRKDKYMCAATREFIEQLKST 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|85712010|ref|ZP_01043064.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
 gi|85694196|gb|EAQ32140.1| Transcriptional regulator, LysR family protein [Idiomarina baltica
           OS145]
          Length = 302

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 121/291 (41%), Gaps = 12/291 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AAE+L ++Q+++S Q+  LE  + IKLF R  R L LTE+G 
Sbjct: 7   LNALKSFEAAARHLSFTKAAEELFVTQAAVSHQVKALEEFLQIKLFIRRNRTLLLTEEGQ 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +++ +L     +L+   V   G L ++             L  F   +PD+ I
Sbjct: 67  AYYLQLRDIFAQLIQATDKLR--LVSEKGALTVSVPPSFAILWFVPRLSSFREAHPDMDI 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++      D  D AI      +   +   +L   ++    +P  L       +  
Sbjct: 125 RIKAVDEITGSLTDDVDVAIYYGDG-RWPGVKSYRLHKEYLWPVCSP-ILAERMNVQTPA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH L+   D       D+  +    +PI +        +     +Q  V G GIAL 
Sbjct: 183 DLLKHTLLH--DETRNAWNDWFEMVGERKPIKD---GGPVFSHSSLALQAAVHGQGIALA 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + K   D+ +L+RI    +  +   Y    +     GK+  FRN+I  
Sbjct: 238 NHVLAKPEIDSGHLIRIFPQALRRNKAFYLVCRDNQSEIGKIATFRNWIMQ 288


>gi|254250367|ref|ZP_04943686.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124879501|gb|EAY66857.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 330

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 122/288 (42%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AAE+L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 47  LLVFEAAARHESYTRAAEELSLSQSAISRQMQTLEDQLGVPLFRREGRSVKLTEVGRRYF 106

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L  F   +P + + L 
Sbjct: 107 AELSGALGRIRGATLQ-AMSHQAGAGTLRLATLPTFGSKWLLPHLHGFYAAHPGVTVHLH 165

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-EPLSIQEL 186
                ID   D  D AI +        L   +L    + A A P   +  + +  +    
Sbjct: 166 SRIGAIDFLHDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIAPPDTGRGRKADARTPAWA 224

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L+          E F+      R +        ++ S+  ++Q    G GI L+P 
Sbjct: 225 ARQTLLGVTSNQQAWAEWFSHYRLEHRQMRIG--PSFELTSH--LIQAVRAGMGIGLVPK 280

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +V+D      LV I  D IT   + Y  YP   +    L AFR ++ 
Sbjct: 281 VLVEDELSRGELVPI-GDAITSQRSYYLVYPPGNETLPSLVAFREWLL 327


>gi|34496154|ref|NP_900369.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34330285|gb|AAQ58375.2| probable transcriptional regulator LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 291

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 12/298 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L  F  +   GSFT AA++L ++ S++SR ++ LE ++G++L  R  R L LT +
Sbjct: 2   LSTESLIAFTTIMDCGSFTAAADKLGVTASNVSRSLAQLEKQLGVRLLTRTTRRLDLTAE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+ L      +   L   + +LQ ++ +PSG +R+   I +  +LL  +L  F   YPDI
Sbjct: 62  GAWLLERARVILENLNDAEQQLQAAAARPSGLVRVNAAIPVLDHLLAPHLAGFQARYPDI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L      +D+  + AD AIR+  P+  S+L  R L    +   AAP YL+    P +
Sbjct: 122 RLELAGAEAVVDLIEERADLAIRVG-PLADSTLNARLLCESPLRIVAAPDYLRRHGRPRT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H  + F       +             G         +S  ++    + G GIA
Sbjct: 181 AADLQAHRQLGFTSPASLNLWPL-------GANGLKVNPSPAASSGATLRALALHGCGIA 233

Query: 243 LLPDYIVKDNPNLVRI----MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            L D++V  +    R+    + +       ++  + +  +   ++    +++     +
Sbjct: 234 CLADFLVGPDIAAGRLEAVRLPEQRDWKQPIWAVFYKQGRPLPRIACLVDYLADALAE 291


>gi|293395045|ref|ZP_06639332.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422452|gb|EFE95694.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 295

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 130/289 (44%), Gaps = 11/289 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  +A+ GSF+ AA +L +  SS+ R I  LE ++G+ LF R  RGL LT+ G  
Sbjct: 8   EHLPIFLEIAQQGSFSAAARKLGMVPSSLVRHIDTLEQQLGVVLFIRSTRGLILTDAGDM 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L      +   +   + EL   +  P G LR++     G+  L   L      +P + ++
Sbjct: 68  LKNRAIALQADIIAVRAELTSLNTAPQGVLRLSCLPTFGKTTLLPLLPTLTQRHPKLSVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  +  D   +  D A+R+ +  + S+L   ++ T      A+  Y+     P S+  
Sbjct: 128 LDLTERQTDPKRELLDAAVRIGEQ-KDSTLYASRIGTQRWMMCASADYVARFGRPDSLAA 186

Query: 186 LDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           L +H LI  F    P C     W   +D P+       L+ + + +  Q  + G GIA L
Sbjct: 187 LTQHRLIGRFHKQQPAC-----WAQILDAPLLNQCNIVLRCDDFSAQRQATLSGMGIAFL 241

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P+++V D+     L+ +M         +Y   P A   + KL A  + +
Sbjct: 242 PNWVVGDDVQANRLLALMGGPRGEEQAIYLMRPVAK-ISAKLAALISLL 289


>gi|294677004|ref|YP_003577619.1| glycine cleavage system transcriptional activator [Rhodobacter
           capsulatus SB 1003]
 gi|294475824|gb|ADE85212.1| glycine cleavage system transcriptional activator [Rhodobacter
           capsulatus SB 1003]
          Length = 307

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 124/291 (42%), Gaps = 14/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L+ F   AR+ S T AA +L L+QS++SRQI  LE ++G +LF+R  + + LT+ G
Sbjct: 10  SLSLLQAFETAARTQSITAAAAELSLTQSAVSRQIRALEAQLGTELFHRERQTIRLTQGG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   R       K+ T  + L+ +     G L +A     G   L   L +FL  +P I 
Sbjct: 70  AAYARDIRAALQKISTASLTLRANPG--GGTLTLAILPTFGTRWLAPRLPDFLAAHPGIT 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+      D + +  D AI    P          L   H+    +P          ++
Sbjct: 128 LNLVTRLTQFDFATEAVDAAIHFGVP-DWPGAECTWLRGEHVVPACSPDLAARHG-FATL 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIA 242
           QEL    L+              W    DR    P ++  +  + + ++ Q  ++G G+A
Sbjct: 186 QELRAAPLLHLTS------RPDAWEKFFDRAGMAPQQLHGMLFDQFATVAQAAMVGLGVA 239

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP+++++D   +  LV  +   +      Y C P        L AFR+++
Sbjct: 240 LLPEFLIEDEIASGRLVVPLAARMRSDEAYYLCAPRGRGPHPPLAAFRDWL 290


>gi|89094197|ref|ZP_01167139.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
 gi|89081452|gb|EAR60682.1| transcriptional regulator, LysR family protein [Oceanospirillum sp.
           MED92]
          Length = 321

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 119/298 (39%), Gaps = 6/298 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +   + L+V   VA+  S T AA  L +  ++ S  +  +E  +G++LF R  R L LT 
Sbjct: 10  NMLLEDLQVVLEVAKLRSITAAANNLDMRTATASAALKRVENALGVELFARTTRQLRLTT 69

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K      +    LE  +  L+       G+LRIA   DLG+NLL   L EF+  YP 
Sbjct: 70  AGEKYIPQCEQALQMLEQAKQGLKHELDIIDGELRIAMPSDLGRNLLTPWLDEFIDDYPA 129

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +   + + +ID   D  D A+R   P   ++L   K+  +     A   YL     P 
Sbjct: 130 LTLSTHVSDSNIDFYRDRIDIALRYGSP-SDANLYGFKICNVPGLLCATQSYLDQYGTPE 188

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  HN + +   +   + D        +            N    + ++ V G G+
Sbjct: 189 HPHDLASHNGLFY--QLHDVIHDIWTFTKEGQSYKIKMSGNRASNDADLVRRWAVTGKGL 246

Query: 242 ALLPD---YIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+           N  LV +M +       ++   P     T  ++  R+ +  + ++
Sbjct: 247 AVKSCLDLSDDLLNDRLVNVMPEYSPRVTELWLICPTRQSITPAVRLLRDRMKERCQE 304


>gi|107022228|ref|YP_620555.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116689173|ref|YP_834796.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105892417|gb|ABF75582.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116647262|gb|ABK07903.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 305

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 119/297 (40%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L + +S +SR+++ LE  +G++L  R  R  T+T+ G
Sbjct: 7   DLNDLYYFVQVVEHGGFAPAGRALDMPKSKLSRRVALLEARLGMRLIQRSTRRFTVTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +     +P G +R++  I L  +L+   +  F+   P ++
Sbjct: 67  QTYYAHCRAMLVEADAADEAIALLHEEPRGIVRVSCPIVLLDSLVGTMIAAFMAACPRVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S L  R L        A+P  L+    P  
Sbjct: 127 IHLEATNRRVDVVGEGIDVAIRVRPPPLEDSDLALRVLAERGQCLVASPALLREQGVPAV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +    +    +P+    +                       L++    V G G+ 
Sbjct: 187 PADLTRLP--SLDHGVPQSTHVWRLRGPDGAHAEIHHQPRYVTGGMLALRAAAVAGVGVV 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +V+D      LV ++ D       V+  +         ++A  +F+  +  +
Sbjct: 245 QLPTMMVRDEVSRGELVTVLPDWAPRREIVHAVFASRRGLLPAVRALLDFLAERFAE 301


>gi|330810334|ref|YP_004354796.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378442|gb|AEA69792.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 305

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 114/301 (37%), Gaps = 12/301 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS D      L     VAR GSF  AA  L +S +++S  I+ LE  +  +LF R  R +
Sbjct: 1   MSQDRLGLSDLDAVIAVARRGSFRQAAIDLDVSATALSNTIAQLEARLESRLFNRTTRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            +TE G             L      ++  +  PSG LRI       ++ L   + EFL 
Sbjct: 61  AITEAGRIFLEQVGPALQDLRAALDAVRSHNAGPSGTLRINAFASAARSALLPLVMEFLQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P + I L+ + + +DI  D  D  +R    + +  ++             +P Y +  
Sbjct: 121 HHPKVHIDLVTEGRLVDIVADGFDFGVRSASLVPNDMIVIPLGQPQRYAVVGSPAYFEKH 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCV 236
            +P +  EL +H  I    +       F W    D  +    +S  L ++    +     
Sbjct: 181 GKPRTPSELLQHRCI---RVRLPNGAIFPWHFERDAEVTRLDVSGPLTLDESSVVKVAVQ 237

Query: 237 LGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+    +  V +       VR +ED   P   +   YP         KAF +    +
Sbjct: 238 EGMGLGFFMEQDVHEEIRAGQFVRTLEDWTPPRDKLCLYYPNRRNPCAAAKAFID--LAR 295

Query: 294 A 294
           A
Sbjct: 296 A 296


>gi|221199131|ref|ZP_03572176.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205388|ref|ZP_03578404.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175179|gb|EEE07610.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181582|gb|EEE13984.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 301

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 119/294 (40%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSFT AA++L ++  +ISR +  LET +G  LF R  R + LT+ G 
Sbjct: 8   LNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLETWLGKPLFERLNRRVVLTDAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++       Q+        LR+          L   L  F + +P I++
Sbjct: 68  TYLAEVGASFDRI--ALATAQQFGQGQQRVLRVNAPATFSLRWLVPKLSSFQVAHPTIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ ID   D AD  IR   P      +  + ++       AP  L+      +  
Sbjct: 126 RLSTSNEPIDKLRDSADLIIR-GGPQTIDGYVADEFLSEVRLPVCAPKLLERTPL-RTPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WLA    P   PR   L +  +   +Q  + G G+A+ 
Sbjct: 184 DLANFTLLHAATYPGMWPE---WLAAAGCPNLAPR-HALTLEHFYLTLQGALDGLGVAMG 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V D   +  LV+       P++  +        +   ++AFR+++ L  R
Sbjct: 240 PIALVADDIADGRLVQPFSGPALPAWRYFTYVSATRIDDEAVRAFRDWLKLAGR 293


>gi|260462677|ref|ZP_05810883.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259031583|gb|EEW32853.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 302

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 114/268 (42%), Gaps = 7/268 (2%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           L ++ S++S+ +  LE  +G  LF R  R + LTE G +        + ++       ++
Sbjct: 34  LGVTPSAVSQAVRALEARIGAALFVRTTRSVGLTEAGQRFLDRAGPAFEEIVAAGEAARD 93

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
              +P+G LR++    +   +L+  +  F   YP++++++   ++ +D++    D  IRL
Sbjct: 94  VGQRPTGLLRLSVPRAVVPLILEPVIASFCRAYPEVELEIAASDEMVDLATGGFDAGIRL 153

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
            + I    +  R   +       +P Y +    P  +++L  H  +    L         
Sbjct: 154 GQFIAPDMVAVRLTPSFSFVVVGSPDYFERHGRPERVEDLRHHACL---RLRRSNGAIAP 210

Query: 207 WLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDV 262
           W         E  +S  L  + Y +++   + G G+A +P  + +       L  +++ +
Sbjct: 211 WSFVDGNEAIEAMVSGPLIAHDYPTLLGAAMRGIGLAQIPRPVAEAPIAQGKLEPVLDSI 270

Query: 263 ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +  V+  +P   +   KL+AF + +
Sbjct: 271 AATTPGVFLYHPGKRQILPKLRAFIDHL 298


>gi|158422321|ref|YP_001523613.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
 gi|158329210|dbj|BAF86695.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
          Length = 303

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/275 (25%), Positives = 119/275 (43%), Gaps = 9/275 (3%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
           S + AA +L L++S +S +++ LE  +G +L  R  R L LTE G+        +  + E
Sbjct: 18  SISEAARRLGLAKSVVSERLAELERLLGARLMQRSTRRLALTEAGTAFLTRGRRLLREAE 77

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
               E+ E     +G LR++  +  G   L   L  FL  +P I++ L LD++ +D+  D
Sbjct: 78  EAVAEIAEQKSLLAGPLRVSAPVSFGTLHLGRALHPFLAAHPGIELTLELDDRFVDVVTD 137

Query: 139 YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLI 198
             D  IR  + +  + L  R+L T      AAP YL+    P S+  L  H  I + +  
Sbjct: 138 GFDLVIRHGQ-VHDTRLAARRLATSRRFLVAAPAYLEAHEAPASLDALSAHRAILYANRE 196

Query: 199 PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNL 255
                      T    +       L+VN+ + +    V G G+ALLP ++  +      L
Sbjct: 197 TDWR-----FETPSGAVAVRPRPGLRVNNGVMMRGAAVAGLGLALLPTFLCHEELAAGTL 251

Query: 256 VRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +   V      ++  YP     + KL+A    +
Sbjct: 252 KVVDVGVPAEGAQLHAAYPLDRSASAKLRALIEHL 286


>gi|296108001|ref|YP_003619702.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy]
 gi|295649903|gb|ADG25750.1| Transcriptional regulator [Legionella pneumophila 2300/99 Alcoy]
          Length = 302

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 132/297 (44%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     L+ F       SF+ AA++L++S S +S+QI+ LE E+ + L  R    LT+T
Sbjct: 1   MNI-LSCLKGFITTVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLIRSTTRLTVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L+    +++ +LE  ++      ++ +G +R+  T+      L     +F+  YP
Sbjct: 60  DSGHRLYEKALQLFEQLEAVKVIATPDQLELNGVIRLYLTVTPAIPYLTKLSIQFMRQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ +I+ +   ++     D AI     ++ S L+ ++L +I    +A+P Y+     P
Sbjct: 120 KIELDIIVGSDTKELYSSTFDLAISF-DDVKHSKLVCKRLFSIQRKVFASPGYIAQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ EL KHN +       +    FN                 + N+   + Q  V   G
Sbjct: 179 QTLDELPKHNCLINTLYGLQNKWVFN-------KKIIHVSGNFKSNNAGVLKQAAVADVG 231

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   P + V +      L+ ++ +  +P   +Y   P+   +  K+    NF   KA
Sbjct: 232 ILWAPYFSVYEEIKNEALIPVLPNESSPDINLYAICPKPTVDEQKINLLLNFFCEKA 288


>gi|145300274|ref|YP_001143115.1| LysR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853046|gb|ABO91367.1| transcriptional regulator, LysR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 300

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 7/287 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  FY V + GSF+ AA+ L +S+  +SR +S LE  +  +L  R  R L+LTE 
Sbjct: 2   MDIAHLASFYEVVQRGSFSAAADVLGVSKGMLSRHVSALEAALNAQLLQRTTRRLSLTEA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+  T +++  +   + ++Q  + + +G+LR    +  G  ++   L  F +L P +
Sbjct: 62  GKTLYLQTGQIFALVRQAEEDIQALTEEDAGRLRFTCAVSTGDRMVSELLGHFAVLCPGV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L   N  +D+S    D A+R    I   +L+   L  +     A+P  L     P +
Sbjct: 122 EVELNFTNAMVDMSQGENDIALRAMSSIPD-NLVALPLGQLKDVVVASPALLVREGIPAT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     +  G         F      +          ++ N Y +++Q    G G A
Sbjct: 181 PYELSSRPCLLQGSNPAWEQWHFR---RGEEEAHILVQGKVRANHYSTVLQLARAGMGYA 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
             P  +V+       LV +++   +    ++  + +  +   K++ F
Sbjct: 238 KCPLMLVEPALAAGELVTVLDGWQSGLHQLHVLHAQQRRVPRKIRLF 284


>gi|152994971|ref|YP_001339806.1| LysR family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835895|gb|ABR69871.1| transcriptional regulator, LysR family [Marinomonas sp. MWYL1]
          Length = 317

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 72/269 (26%), Positives = 130/269 (48%), Gaps = 7/269 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L +F  VA+  SFT AA++L +S+S+IS+QI  LE  +G +L  R+ RG+ LT  G  L 
Sbjct: 23  LLIFVEVAKKRSFTAAAKKLGMSKSAISQQIKRLEESIGHQLLIRNTRGVVLTSAGDTLL 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +     +L  T +EL     +PSG  +++    L + ++   LK+  L +P +  +++
Sbjct: 83  ARSELWSEQLSMTLMELDGEKAQPSGHFKVSVPPFLEKGIVVPVLKQLCLEFPKLTPEVL 142

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +  K  D+     D AI     I+        +  +     A+P Y+K      S ++L 
Sbjct: 143 VTEKWQDLIEHNLDAAI-FGGDIKDCGYRALSVGRVSEVFCASPMYIKQYGAIESTEQLS 201

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I       + ++ F+   T +R I      C +VN+  S ++  +   GIALLP++
Sbjct: 202 SHRFIATA-WHREKLQLFDNKQTNERLISV--THCAKVNTLTSALEAVLSDMGIALLPEF 258

Query: 248 IVKDNP---NLVRIMEDVITPSFTVYFCY 273
           + + +     LVR++ ++    +  YF +
Sbjct: 259 LAQTHLNKERLVRVLPEIRGREWHFYFLH 287


>gi|260223119|emb|CBA33365.1| hypothetical protein Csp_B18680 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 341

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 133/296 (44%), Gaps = 12/296 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR    VAR  +F  AAE+L L+QS++SRQI  LE EVG+ LF RH R + LT  G +L
Sbjct: 30  HLRALEAVARHLNFRAAAEELALTQSAVSRQIQALEDEVGVPLFLRHTRAVELTGAGGQL 89

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R       ++++   +++ ++ +    + I+T        L   L+ F   YPDI I++
Sbjct: 90  LRAAVPSLERIDSAVRQIRRTAGRK--SVAISTWASFASMWLIPRLEAFQAEYPDIDIRI 147

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+     D AIR  +P   +S    +L    +   A+P  LK+        +L
Sbjct: 148 DATDNPVDLDTSDVDLAIRYTQPGGVNS-DAVRLFGEQLTPVASPWLLKSGAPLRKAADL 206

Query: 187 DKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +  L+   D       + +    WL    +P  EP+   +  N    I Q  + G GIA
Sbjct: 207 ARFALLEASDTHRVQNLEWLTWRRWLELNQQPRLEPK-RWMYFNYAHQIAQAALTGQGIA 265

Query: 243 LLPDYIVKD---NPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L    +V D   + +LV ++    I      +        +  +++AF +++  +A
Sbjct: 266 LARMPLVADSLASGDLVEVLPGGRIDTPMVYWLLVGARNSSRPEIQAFCDWLLAQA 321


>gi|260769630|ref|ZP_05878563.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|260614968|gb|EEX40154.1| transcriptional regulator LysR family [Vibrio furnissii CIP 102972]
 gi|315182365|gb|ADT89278.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 298

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 127/297 (42%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + +  V   GSF  AA +L+ + S++S++I  LE  +G++L  R  R +T TE
Sbjct: 1   MDWLQSAKTYIRVVEEGSFNGAARKLNTTSSAVSKRIHWLEERIGVQLLKRTTRSVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +          ++   E +  +  P+G L+I  T+ +G   L   + EFL  YPD
Sbjct: 61  AGVLFYERAKAQLESWQSVLDETRSLNQSPAGLLKIGATLAVGSKFLMQYVDEFLQHYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQL        +   + D  I R    + S S     L       YA+P YL+    P
Sbjct: 121 IRIQLTTT-TPGQLPELHLDLFISREIDQLNSLSFKATPLFVHKAGFYASPQYLQRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ +L +HN++ +G+   + ++  N                    +  ++      G G
Sbjct: 180 STLHDLTQHNVLCWGEQTSREVKTNNHKRLT-------LSGNFATTNPEALFYAGKCGMG 232

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I +    ++K+      LVRI+ D+     TV+  YP+      +   F NF+  K 
Sbjct: 233 IVVSNHVMLKEELKQRTLVRILPDITIDQATVFAYYPKLDYQHTRTHLFLNFLKEKL 289


>gi|157149275|ref|YP_001456594.1| hypothetical protein CKO_05115 [Citrobacter koseri ATCC BAA-895]
 gi|157086480|gb|ABV16158.1| hypothetical protein CKO_05115 [Citrobacter koseri ATCC BAA-895]
          Length = 302

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 117/301 (38%), Gaps = 7/301 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + L +F   A   SF+ AA +  +  + +S  I  LE+ + I+LF R  R L LT +
Sbjct: 2   FRLEDLTLFVRAAALNSFSDAAREAGVQPAQVSSAIKRLESTLNIRLFARSTRSLRLTPE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        ++   +     ++Q    + SG L+IA   DLG+NLL    + F   +P +
Sbjct: 62  GEVWLPYARQMLEVMHAGLQKIQTPEDEISGTLQIAVPSDLGRNLLLPVFQSFRRRHPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPL 181
           ++++   ++  D+  D  D A R     + +S I   +         A+P ++    +P 
Sbjct: 122 RLRVFFSDQVADVFKDPVDVAFRYGN-TEDASYIALPVSPDNRRVLVASPDWVAQYGDPR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L   N +TF  ++   + D                  +  +    I +  + G G+
Sbjct: 181 HPDDLANLNALTF--VLRGRLHDRWTFIRNGDVSSVQVNGTMMSDDAEVIRRLAIAGEGM 238

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           A      V +   +  L R+M D       +    P   + +  ++     +  +    +
Sbjct: 239 AYKSWLDVSEDVRDGRLQRLMPDYQGEKVPLNMICPHRKQLSTAVRLLHEAVKARCERLE 298

Query: 299 F 299
            
Sbjct: 299 L 299


>gi|107028531|ref|YP_625626.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116686529|ref|YP_839776.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897695|gb|ABF80653.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116652244|gb|ABK12883.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 330

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 122/288 (42%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AAE+L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 47  LLVFEAAARHESYTRAAEELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 106

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L  F   +P + + L 
Sbjct: 107 AELSGALGRIRGATLQ-AMSHQAGAGTLRLATLPTFGSKWLLPHLHGFYAAHPGVTVHLH 165

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-EPLSIQEL 186
                ID   D  D AI +        L   +L    + A A P   +  + +  +    
Sbjct: 166 SRIGAIDFLHDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIAPPDTGRGRKADARTPAWA 224

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L+          E F+      R +        ++ S+  ++Q    G GI L+P 
Sbjct: 225 ARQTLLGVTSNQQAWAEWFSHYRLEHRQMRIG--PSFELTSH--LIQAVRAGMGIGLVPK 280

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +V+D      LV I  D IT   + Y  YP   +    L AFR ++ 
Sbjct: 281 VLVEDELSRGELVPI-GDAITSQRSYYLVYPPGNETLPSLVAFREWLL 327


>gi|170699567|ref|ZP_02890607.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135518|gb|EDT03806.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 305

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 121/297 (40%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L+L +S +SR+I+ LE  +G++L  R  R  T+T+ G
Sbjct: 7   DLNDLYYFVQVVEHGGFAPAGRALNLPKSKLSRRIALLEARLGMRLIQRSTRRFTVTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +     +P G +R++  + L  +L+   +  F+   P ++
Sbjct: 67  QTYYAHCRAMLVEADAADEAIALLHEEPRGIVRVSCPVVLLDSLVGTMIAAFMAACPRVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S L  R L        A+P  L+    P  
Sbjct: 127 IHLEATNRRVDVVGEGIDVAIRVRPPPLEDSDLALRVLAERGQCLVASPALLRELGTPAV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +    +    +P+    +                 L     L++    V G G+ 
Sbjct: 187 PADLTRLP--SLDHGVPQAAHVWRLRGPDGAQAEIHHQPRLVTGGMLALRAAAVAGVGVV 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +V+D      LV ++ +       V+  +         ++A  +F+  +  +
Sbjct: 245 QLPTMMVRDEVARGELVTVLPNWAPRREIVHAVFASRRGLLPAVRALLDFLTERFAE 301


>gi|187918733|ref|YP_001887764.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717171|gb|ACD18394.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 292

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G 
Sbjct: 7   LNALRAFESSARHLSFTRAAFELNVTQAAVSQQVRTLEERLGTALFKRLPRGLAMTDEGL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L  V ++ + ++E    + +         L +          L   LK F   +P +++
Sbjct: 67  ALRPVLTDAFDRIEAVLKQFEGGHFHE--VLTVGVVGTFAVGWLMPRLKSFRDAHPFVEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+ +N  +D++ +  D AIR        SL   +L+   +     P   +   +P   +
Sbjct: 125 RLLTNNNLVDLATEGLDFAIRFGDGTWPGSL-ATRLLDAPLALLCTPEIAERLTKP---E 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  +  +W +    P    R      +S   +++  + G+GIAL 
Sbjct: 181 DLAGETLL----RSYRTDDWMSWFSAAGIPPRPIRGPVF--DSSRLMVEAAMQGAGIALA 234

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +         LVR   DV   + + +  + +    T  +  F  +I  +A
Sbjct: 235 PALMFDHEINTGRLVRPF-DVEVHAGSYWLTWLKGKPMTPAMLLFNQWIIKEA 286


>gi|91782358|ref|YP_557564.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686312|gb|ABE29512.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 302

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 113/289 (39%), Gaps = 10/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F    R GSF  AA +LH++  ++S+Q+  LE  +G  LF RH R + LT    
Sbjct: 8   LNALRAFEAAGRLGSFKEAAAELHVTHGAVSQQVRLLEEWLGAPLFERHNRRVVLTAAAK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   ++ +L              S  L +          L   L +F   +PD+ +
Sbjct: 68  AYLGEIGPLFEQLSQATARY-GFPETVSRTLSVNAPATFTLRWLVPRLAKFRAGHPDVDV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   N+  +   D  D  IR   P        R  ++       +P  L+  +   +  
Sbjct: 127 KVETSNESAESLKDVYDIVIR-GGPDTFYGYSMRPFLSEERLPVCSPALLQR-QPLRTPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+    L P+   D  WLA+   P   P  + L  + +   +Q  + G GIA+ 
Sbjct: 185 DLRQHTLLHTSSL-PRLWPD--WLASAKIPALRP-AAALTFDHFYLTLQAAIDGIGIAMG 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V D+     LV        PS +     P+       +  FR ++
Sbjct: 241 PTALVSDDLAAGRLVAPFAGPRLPSRSYCTYVPDGKSADDLVALFRAWL 289


>gi|327191960|gb|EGE58941.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 302

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 125/289 (43%), Gaps = 7/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L V   V+   SF  AA +L ++ S+IS  IS LE  +G++L  R  R +  TE+G 
Sbjct: 6   LSQLAVLAAVSEHRSFRAAARELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L         +++     ++++  KP+G LR+         LL   L +FL LYPDI +
Sbjct: 66  LLLERLRPALEEIDIALEAVRDTRAKPAGNLRVTAPRFASDILLAPRLGDFLNLYPDITL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  ++   DI  +  D  +RL + +++  +  R    +     A+P Y +   +P   +
Sbjct: 126 EIANEDGFTDIVKEGFDAGLRLEESLEADMIAVRFSPNLTTVIAASPDYFERHPKPEHPR 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I            + W    D       +   L V+     +   + G+G+A 
Sbjct: 186 DLVHHRCI---KRRFTNGSIYRWEFEKDGQELVVAVDGPLIVSEDRLALLAALNGAGLAY 242

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           L D  V        LVR++ED   P    +  YP   +    L+AF +F
Sbjct: 243 LFDLRVHAELAAGKLVRVLEDWCAPYPGPFLYYPTRRQMRPALRAFIDF 291


>gi|167589081|ref|ZP_02381469.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 304

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 131/302 (43%), Gaps = 10/302 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             D+  VF  VA +GSFT AA  L+ +++++S  I  LE E+G+ L  R  R + LT+ G
Sbjct: 3   SLDRFAVFRAVAEAGSFTAAAAALNQARAAVSFNIKQLEAELGVTLLTRTTRRVELTDAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +     V  + ++   + +       G LR+A+T++    ++   L  F   +P +Q
Sbjct: 63  ERFYTRCLRVLDEADSAIDDARGEHGGMHGSLRVASTVEYASMVVAPALHAFTQQHPALQ 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQR--KLVTIHMHAYAAPHYLKNCREPL 181
           ++L      +D+  D  D AIRL +  Q + L  R   L +  +   A+P  L       
Sbjct: 123 VRLETHTSQVDLVRDRFDVAIRLGRAEQFADLPYRGVCLSSYDVRPVASPALLATVGAAR 182

Query: 182 --SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +   L +   +    L              +          L V++   + +    GS
Sbjct: 183 IDTPDALARLPQLGHSQLERVAAWPLVSRDGSEHVFRPSAKPRLVVDNASVLRELARQGS 242

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI---FLK 293
           G+ALLP+++V+D+     LV  +     P  +VY  Y        K++A+ +F+     K
Sbjct: 243 GVALLPEWLVRDDLARGVLVDALPGYRFPRQSVYALYVSTRHVPQKVRAWVDFMKAYLKK 302

Query: 294 AR 295
           AR
Sbjct: 303 AR 304


>gi|330939599|gb|EGH42910.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 230

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 109/232 (46%), Gaps = 5/232 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +R+F  V  SGS T A+++L LS+  +SR++  LE  +G++L  R  R L +T  G 
Sbjct: 4   FEDMRMFCQVMESGSLTAASDKLGLSKQFVSRRLMQLEQRLGVRLLNRSTRRLDVTPLGQ 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  +LE  +  +   + +P G LR++  +      L   L  FL  Y ++ +
Sbjct: 64  SYYESALRLLAELEQVEQGITGQNNEPRGTLRVSAPLSFAVTHLACLLPLFLQRYREVAV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ L ++ +D+  +  D  +R+   ++ SSLI R++ +I     A+P YL         +
Sbjct: 124 EVDLSDRPVDVISEGYDVVLRIG-VLEDSSLIARRIASIDRVYCASPAYLAERGIQQKPE 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
           +L  H+ + +G                D+P+       ++ N+   + +  +
Sbjct: 183 DLHTHDCLPYGHSRQAQWR----FQGQDKPLTLNVSGRMRANNGELLRESAI 230


>gi|115351083|ref|YP_772922.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115281071|gb|ABI86588.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 305

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 122/297 (41%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L+L +S +SR+I+ LE  +G++L  R  R  T+T+ G
Sbjct: 7   DLNDLYYFVQVVEHGGFAPAGRALNLPKSKLSRRIALLEARLGMRLIQRSTRRFTVTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +     +P G +R++  + L  +L+   +  F+   P ++
Sbjct: 67  QTYYAHCRAMLVEADAADEAIALLHEEPRGIVRVSCPVVLLDSLVGTMIAAFMAACPRVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S L  R L        A+P  L+    P  
Sbjct: 127 IHLEATNRRVDVVGEGIDVAIRVRPPPLEDSDLALRVLAERGQCLVASPALLRELGTPAV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +    +    +P+    +                 L     L++    V G G+ 
Sbjct: 187 PADLTRLP--SLDHGVPQAAHVWRLRGPDGAQAEIHHQPRLVTGGMLALRAAAVAGVGVV 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +V+D     +LV ++ +       V+  +         ++A  +F+  +  +
Sbjct: 245 QLPTMMVRDEVARGDLVTVLPNWAPRREIVHAVFASRRGLLPAVRALLDFLTERFAE 301


>gi|254503124|ref|ZP_05115275.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222439195|gb|EEE45874.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 306

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 123/289 (42%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + +F  VA++ S T A   L L  ++++R++  LE ++G +L +R AR   LT +G 
Sbjct: 2   LDDIALFVHVAQARSLTGAGAALSLPAATVTRRLQRLEDKLGHQLVHRSARKFGLTSEGE 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +  + +  + E T   L     + SG L +A   ++    LQ     F+  +P I++
Sbjct: 62  AYFQAFAGIVEQAEVTARNLSAEMHELSGPLVVAAPTNISVGALQPMWTAFMRRHPGIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L N +ID+  D  D A+R+  P Q   L Q+K+ +I     AAP YL+    P    
Sbjct: 122 DLRLSNFNIDLLEDRIDLALRIG-PQQDQRLYQKKMGSISTAVMAAPSYLEGGNMPEGPN 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H +I    +    +                    + V+    + Q+   G G+ LL
Sbjct: 181 DLERHAIIAVRTIPAWRLSH----KLTGSTCVLHLKGDVIVDDIALVRQFAEDGFGVCLL 236

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                    +   L  ++ D       +Y  +P     + + K  R F+
Sbjct: 237 SVTEAAEPLEQGRLKLLLPDWQGQQRDIYAVWPTGRLLSARAKCLREFM 285


>gi|327188505|gb|EGE55718.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CNPAF512]
          Length = 304

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 129/295 (43%), Gaps = 12/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  +F+ AAE+L L+Q +ISRQI+ LE ++G+ LF R +RG+ LTE G+  
Sbjct: 14  ALAAFDSVARLSTFSAAAEELSLTQGAISRQIAALEEQLGVLLFERTSRGVILTEAGTDY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +    ++ +    L   + + + +L +A     G   L   + EF+  +P+I +  
Sbjct: 74  ARAIAGALAEIRSA--SLHAMTKQHNDQLNLAILPTFGTRWLMPRIPEFVARHPEITLNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   D  D AI + +P          L+   +   A+P +L +    L  ++L
Sbjct: 132 ATRIGLFDFDRDDIDMAIHIGQP-DWPGAESTFLMEEMVAPVASPSFLNSHPV-LKAEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L+            F  L     P        ++   + S+ Q C+ G G+AL+P 
Sbjct: 190 LRLPLLQMASRPGAWSHFFESLQVSGAPS-----QAMRFEQFSSVAQACIAGLGLALMPL 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +++     N  LV+     +      Y   P + K+   + AFR ++  +   ++
Sbjct: 245 FLIDSELANGQLVQAFPHQVKSPSAYYAVAPLSRKDFRPVVAFRAWLLEEVARYQ 299


>gi|221199028|ref|ZP_03572073.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221205287|ref|ZP_03578303.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175078|gb|EEE07509.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181479|gb|EEE13881.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 304

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 126/288 (43%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQI  LE ++G+ LF R  R + LT+ G +  
Sbjct: 22  LLVFEAAARHESYTRAADELSLSQSAISRQIQTLEDQLGVPLFRREGRSVKLTDVGRRYF 81

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 82  AEVGGALGRIRGATLQ-AMSHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 140

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               +ID  +D  D AI +        L   +L    + A A+P    +     +     
Sbjct: 141 SRIGNIDFHVDDLDAAIAVGTG-DWPGLHAHRLYNEFLIAIASPDAPPDANGERAPAWAA 199

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           +  L+    +         W A       + RI    ++ S+  ++Q    G GI L+P 
Sbjct: 200 RQTLLG---VTSNQHAWAEWFAHYRLDHRQMRIGPSFELTSH--LIQAVRAGMGIGLVPK 254

Query: 247 YIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +V+D      LV I  + IT   + Y  YP   ++   L AFR+++ 
Sbjct: 255 VLVEDELSRNELVSI-GEAITSRRSYYLVYPPENESLPSLAAFRDWLM 301


>gi|167615898|ref|ZP_02384533.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142475|ref|ZP_05590737.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 299

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 125/297 (42%), Gaps = 7/297 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L VF + A +GS + A+  L+++ +  S  +  LE+E+ ++L  R  R L LT  G 
Sbjct: 4   FDDLAVFVLAADNGSLSAASRLLNVAPAVASAAVKRLESELDVRLLARSTRSLRLTPDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +          +L   +  L     +  G L ++   D G+N+L G L EFL LYP + +
Sbjct: 64  RYLAHARNALAELRAGKDALARGRDEVGGDLTLSIPSDFGRNVLSGWLDEFLALYPAVSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
            + + ++ +++     D  +R   P   SSLI   L         A+P Y     +P + 
Sbjct: 124 HVRIGDRIVNLFRQPVDAVLRYGVP-DDSSLIAAPLAPDNRRVLCASPAYFARHGKPSTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ + F   + +   D     + D             +    + ++ + G GIA 
Sbjct: 183 DDLSRHHCLRFA--LSERTHDQWTFHSGDVARTVKVTGNRVADDGELVRRWALGGYGIAY 240

Query: 244 LPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                V D+    R+   ++   T +  +   Y   L  +  L A R+F+  +   +
Sbjct: 241 KSRLDVLDDLRAGRLESALDAWTTEATPLNLVYTHRLALSPTLDALRDFLRARIAAY 297


>gi|158425802|ref|YP_001527094.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158332691|dbj|BAF90176.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 357

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 109/287 (37%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SF+ AA +LHL+Q ++SRQI  LE ++G+ LF R  + + LT+ G    
Sbjct: 66  LTAFEAAARHQSFSRAAAELHLTQGAVSRQIRHLEEQIGLDLFERVRQRVVLTDGGRLYL 125

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +   L         +    +G +++A         L   L +FL  +PDI I  I
Sbjct: 126 AEIRPLLQALSDATQR-AMTYAGGAGSIQLAVLPTFATRWLMPRLPDFLARFPDITINFI 184

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D + +  D AI    P+   + I   L+   +    +P +          + L 
Sbjct: 185 SRIAPFDFAAEPLDAAIHYGDPVWPGA-ICEHLMDEEVVPVCSPAFRDRH-ALDRPERLA 242

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
               +       +      WLA        P     +   +  I +    G G+ L+P +
Sbjct: 243 G---VVLLQQTTRPHLWDEWLALAGASHPSP-FRGPRFEQFTMIAEAAAAGLGVGLVPRF 298

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            V++      LV   +  +      Y  YPEA    G + AF  +I 
Sbjct: 299 FVEEEVAQGRLVLPFDRPMCSDKAYYVVYPEAKAGGGAVTAFARWIV 345


>gi|152988689|ref|YP_001346318.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963847|gb|ABR85872.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 303

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 125/290 (43%), Gaps = 12/290 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+F  V ++GS + AA +L +   ++SR++  LE ++ ++L  R  RG  LTE 
Sbjct: 1   MDLNALRMFVGVVQAGSLSAAAGRLGIPLPTLSRRVRDLERQLAVQLLERSVRGTRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+   S     L   +  L     +  G+LR++             L  F   YP+I
Sbjct: 61  GMRLYENASRGVEMLHEAEQALVSDQARLKGRLRLSLPPGFEPWW--ELLGLFQRRYPEI 118

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q+    + ID+  D  D A+R+   +   +++ R+L+       A+P  L+      +
Sbjct: 119 RVQVFTTERRIDLIEDGVDVALRVGA-VAHETMVARRLLAYRHVLVASPRLLEREGLAET 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L +      G   P    +  W  ++     +PR+  L  N Y  +    +    +A
Sbjct: 178 LDDLRRFPA---GMWSPGGSGEGAW--SLGGQPVKPRV-VLATNDYAHLRARALAAELVA 231

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
            LP ++         LV ++     P   ++  YP     +  ++ + +F
Sbjct: 232 ELPPFMAAAAVRAGELVELLPRSPLPEQEIHLLYPSHRHPSTLVRTYLDF 281


>gi|296162317|ref|ZP_06845111.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887471|gb|EFG67295.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 302

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 10/290 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LR F    R GSF  AA +LH++  ++S+Q+  LE  +G  LF RH R + LT   
Sbjct: 7   SLNALRAFEAAGRLGSFKEAAAELHVTHGAVSQQVRLLEEWLGAPLFERHNRRVVLTAAA 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                    ++ +L              S  L +          L   L +F   +PD+ 
Sbjct: 67  KAYLGEIGPLFEQLSQATARY-GFPETVSRTLSVNAPATFTLRWLVPRLAKFRAGHPDVD 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++   N+  +   D  D  IR   P        R  ++       +P  L+  +   + 
Sbjct: 126 VKVETSNESAESLKDVYDIVIR-GGPDTFYGYSMRPFLSEERLPVCSPALLQR-QPLHTP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H L+    L P+   D  WLA+   P   P  + L  + +   +Q  + G GIA+
Sbjct: 184 DDLRQHTLLHTSSL-PRLWPD--WLASAKIPALRP-AAALIFDHFYLTLQAAIDGIGIAM 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P  +V D+     LV        PS +     P+       +  FR ++
Sbjct: 240 GPTALVSDDLAAGRLVAPFAGPRLPSRSYCTYVPDGKSTDDLVALFRAWL 289


>gi|330965773|gb|EGH66033.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 319

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 115/290 (39%), Gaps = 6/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G+ L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECRGFAPASRKLGIPKSKLSRRIAGLEERLGVSLIHRSTRKFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + +  +  +Q S  +P GK+ I+    +    +   +  F+  +P +
Sbjct: 62  GRDYYGHCVAMLVEADAAEEAIQRSKSEPQGKVVISCPPAMAAMGINEAIAGFMAAHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+ +   N+ +D   +  D A+R+R  P++   L+ + L        A P          
Sbjct: 122 QVHIESTNRRVDPLSENIDIALRVRFPPLEDDGLVVKTLGHSAQRLVAHPDLAALLPANA 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S + L +   +      P+              +    +  L  +    I+Q  +   G+
Sbjct: 182 SFEALARLPSLDVPSSTPEHRWLLE--NGPGHYVEVRHVPRLVSSDLDGILQAVLQWVGV 239

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           A LP+ +V++      +V + +        ++  +         ++   +
Sbjct: 240 AQLPEILVREALQQGRMVELFDAHRPKCGILHAVFVSRRGLLPAVRGLLD 289


>gi|319776564|ref|YP_004139052.1| DNA-binding transcriptional dual regulator [Haemophilus influenzae
           F3047]
 gi|317451155|emb|CBY87388.1| DNA-binding transcriptional dual regulator [Haemophilus influenzae
           F3047]
          Length = 297

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +GI+LF R  R L LTE G 
Sbjct: 8   LNSLKSFESAARYLSFTKAADELCVTQAAVSHQIKLLEEFLGIELFKRKNRSLELTELGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L      L      P   L I+     G   L  +L EF  LYP I++
Sbjct: 68  AYFVDINKILSRLNEATERLLTLKTDPH--LNISVPQTFGIQWLVPHLSEFNQLYPQIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI         +L   +L   ++   A+P  L      +  +
Sbjct: 126 RLTGVDQDEGLLNKEIDLAIYYGLG-NWQNLQVDRLCEENLLILASPELLAEN-PIIQPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH LI             N L   D  I +  +     +     +Q  + G GI L 
Sbjct: 184 DLKKHTLIHI-HTCDNWQAMANHLQLDDLNIQQGPL----FSHTFMALQAAIHGQGIVLA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +     +N +L  ++   +    + Y        +  K++AFR +I 
Sbjct: 239 NRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQAFRQWII 288


>gi|330950502|gb|EGH50762.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 319

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 117/292 (40%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G++L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECLGFAPASRKLGIPKSKLSRRIAGLEERLGVRLIHRSTRTFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +  S  +P G++ I+    L        +  F   +P +
Sbjct: 62  GRDYYAHCVAMLVEAEAAEEAILRSKSEPQGRVVISCPPALAAMGFNETIARFAAEHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+   N+ +D   +  D A+R+R  P++   L+ +KL        A            
Sbjct: 122 QIQVESTNRRVDPLTENIDIALRVRFPPLEDDGLVVKKLGHSAQRLVARADLAARLSATP 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S++ L     +     +P    +  WL                L  +    ++Q  + G 
Sbjct: 182 SLEALSTLPSL----DMPSSNHEHRWLLETQPGHYAEIRHTPRLISSDLDMMLQAALQGV 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A LP+ IV++   +  LV +  +       V+  +         ++   +
Sbjct: 238 GVAQLPELIVREALQDGRLVELFSEHRPKCGIVHAVFASRRGLLPAVRGLLD 289


>gi|113970787|ref|YP_734580.1| LysR family transcriptional regulator [Shewanella sp. MR-4]
 gi|113885471|gb|ABI39523.1| transcriptional regulator, LysR family [Shewanella sp. MR-4]
          Length = 320

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 127/297 (42%), Gaps = 13/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S T A+++LH++  +IS+QI  LE  +G  LF R  + + LT++  
Sbjct: 26  LNALRAFESAARLQSMTLASKELHVTHGAISKQIRVLEEFLGFALFVRLHKKVALTDEAK 85

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L +   +L+    +P   L I     L  N L   +++F   +P + +
Sbjct: 86  RYLPHVQAALQTLSSATADLRSQGSRPQ-TLAINVLPSLTINWLIPRMEQFKSRHPHVYV 144

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +  +D S    D AIR    +    +   KL+   +    AP       +  SI+
Sbjct: 145 DLSIGDFAVDFSQGRYDIAIRSSTQLPR-GVNYIKLMDEDLCLVCAPSL---APKLKSIE 200

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++++  L+      P+  E   W   V   + + +     V  +  + Q    G G AL+
Sbjct: 201 DINQVTLLKHTTR-PELWEY--WADKVGLVLTQAQ--TFGVEHFYMLSQAAASGMGAALI 255

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P + ++D   N +LV   +   T  +  Y   P++     K++AF +++      ++
Sbjct: 256 PRFFIEDQLANGSLVIPFQAPFTSPYAYYLLTPKSPSLPLKVQAFIDWMLELFAPYR 312


>gi|17549133|ref|NP_522473.1| DNA-binding transcriptional activator GcvA [Ralstonia solanacearum
           GMI1000]
 gi|17431384|emb|CAD18063.1| probable transcriptional regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 313

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 123/298 (41%), Gaps = 12/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L++F   AR  SF+ AAE L ++ S++S QI  LE E+G+ LF R  R +TLT+ G
Sbjct: 8   NLGALKMFEAAARLESFSRAAEALCVTHSAVSHQIRALEAELGMVLFKRDGRRITLTDPG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +            E         +     +L I+         L   +  F+  YP+I 
Sbjct: 68  RRYAERIR--SALFEIAAATESMRTGDRERRLVISLLPSFAARWLTPRIGRFIERYPEID 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   +   D + D  D  +RL        L    L+        AP +    R P + 
Sbjct: 126 VELQSTHVITDFNRDDVDVVLRLSDG-NDPDLFVEPLLDEVFFPACAPTF-NGGRLPKTP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L    L+     + +      ++A       EPR   L  ++   +MQ  + G G+ L
Sbjct: 184 ADLADVTLLRSDYEMWRAW----FMAAGLEGWAEPRRGVLYQDASQ-LMQASMEGQGVGL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +   +      N  LVR+ +      +T +F  P+ L +T +++A R ++  +   ++
Sbjct: 239 VRRSLAMQEIINGRLVRLFDIDAPSPWTYWFICPQPLLDTFRVRALREWLHEEVAQFR 296


>gi|317404172|gb|EFV84615.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 309

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 138/298 (46%), Gaps = 10/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + +++F  +  +G+ + AA +  +++S +SR +  LE   G +L  R  R L LT +
Sbjct: 7   LDLNLIQLFVTIVEAGTLSEAALRQGVTRSHVSRNLQKLERAFGAQLIRRTTRRLELTHE 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGNLKEFLLLYPD 121
           GS L+   + +  ++E+ +  LQ+   +P+G +R++    LG+ ++L+  L  F L +P 
Sbjct: 67  GSVLYDHGARMAREVESARHALQKLGAEPTGHVRLSLPTGLGELDMLRPLLVRFALEHPS 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++  N+  D+     D A+R    +     + R+L  I  H  AAP YL     P 
Sbjct: 127 LSLRVLFSNRVSDLISSEIDVALRAIS-VPPQDYVARELGRIKWHLCAAPEYLARMGMPA 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             ++L + + +      P+       L    +P      + LQ   +  + Q    G+G+
Sbjct: 186 HPRDLGRFDFLGPPGPRPQATLR---LRGKGQPHEVKLATRLQSEYFPFLAQAAREGAGV 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ALLP YIV+ +     L++++       P   +Y         +   +A  +F+  + 
Sbjct: 243 ALLPAYIVRPDLEAGRLLQVLPAYQAEGPGDKLYILTSPTPYPSSAQRALVDFLKREL 300


>gi|254294578|ref|YP_003060601.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254043109|gb|ACT59904.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 295

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 126/298 (42%), Gaps = 10/298 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW  L+ F  V   GSF+ AA   + SQ+++SR I+ LE ++  +LF R   G+ LT 
Sbjct: 3   NIDWSLLQSFVNVCEYGSFSAAARATNGSQATLSRHITMLEQQLETRLFDRLVSGVELTT 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  + R  S +        +  +      SG +R+         +L   + E  +  P 
Sbjct: 63  KGIDVLRHASNMADAAGQLSMATEGEDQAISGTVRVTAATMTATYILPEIISELRIEEPM 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L+  N+  ++    AD AIR+  P Q  +L  RKL  +    Y A  YL     P 
Sbjct: 123 IDIELVASNRTENLVRREADIAIRMATPTQ-ENLFARKLGDMEFGLYGAKEYLNRHPAPQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIG---EPRISCLQVNSYLSIMQYCVLG 238
           + ++L  HN++ F        +D   L T  +  G   +      + + ++   +  V G
Sbjct: 182 TGEDLLSHNVVGFD------TKDIALLITAMKKHGIDVDREFFTFRSDDHVVCWKMVVAG 235

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            G+ ++   I    P + RI          ++      LK   +++   +F+  K  D
Sbjct: 236 YGLGIIQRKIGDAEPLVSRIDLPNTMARLPIWLIAHSELKTNLRVRRVFDFLAKKITD 293


>gi|114048014|ref|YP_738564.1| LysR family transcriptional regulator [Shewanella sp. MR-7]
 gi|113889456|gb|ABI43507.1| transcriptional regulator, LysR family [Shewanella sp. MR-7]
          Length = 320

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 127/297 (42%), Gaps = 13/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S T A+++LH++  +IS+QI  LE  +G  LF R  + + LT++  
Sbjct: 26  LNALRAFESAARLQSMTLASKELHVTHGAISKQIRVLEEFLGFALFVRLHKKVALTDEAK 85

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L +   +L+    +P   L I     L  N L   +++F   +P + +
Sbjct: 86  RYLPHVQAALQTLSSATADLRSQGSRPQ-TLAINVLPSLTINWLIPRMEQFKSRHPHLYV 144

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +  +D S    D AIR    +    +   KL+   +    AP       +  SI+
Sbjct: 145 DLSIGDFAVDFSQGRYDIAIRSSTQLPR-GVNYIKLMDEDLCLVCAPSL---APKLKSIE 200

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++++  L+      P+  E   W   V   + + +     V  +  + Q    G G AL+
Sbjct: 201 DINQVTLLKHTTR-PELWEY--WADKVGLVLTQAQ--TFGVEHFYMLSQAAASGMGAALI 255

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P + ++D   N NLV   +   T  +  Y   P++     K++AF +++      ++
Sbjct: 256 PRFFIEDQLANGNLVIPFQAPFTSPYAYYLLTPKSPSLPLKVQAFIDWMLELFAPYR 312


>gi|170735895|ref|YP_001777155.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818083|gb|ACA92665.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 302

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 113/290 (38%), Gaps = 6/290 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R++  V   G+ + AA  L + Q ++S +I  LE  +G +L  R AR L  TE+G   +
Sbjct: 7   MRIYVRVVERGTMSGAARDLDMGQPAVSERIEKLEKHLGTRLLMRSARTLACTEEGRIFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +  +    E     + +++    G +R+A     G+ +L G L +    YP + I L+
Sbjct: 67  ERSKALLEAAELAVASVSKTAHALDGTIRLAAPQCFGEVVLPGVLMQIRTAYPKLHIDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D   +  D +IR+ + +     +   L  +     AAP YL       +  +L 
Sbjct: 127 LNDDIVDPVTEGVDISIRVGQ-LGDGGFVAYALGAVGRVLVAAPSYLDRHGPLDTKADLA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I    +     E                 + +  + +  +      G GI ++   
Sbjct: 186 NHPFIRVKGVF--ANEQVPLRHDGGAVEYARIRTVMTASHWRPMFDTIAAGGGIGVVQHP 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              D   +  LVR++     P F +            +++A  + +  + 
Sbjct: 244 ACTDALAHGRLVRLLPHYDVPDFALNVLVHAQRPLPPRVRAVVDLLKSEL 293


>gi|172065037|ref|YP_001815749.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997279|gb|ACB68196.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 300

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 118/289 (40%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF RH R + LT+ G 
Sbjct: 8   LNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGRPLFERHNRRVELTDAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++     +      +    LR++         L   L  F + +P I++
Sbjct: 68  AYLAEVGASFDRIALATAQYFGQGQQR--VLRVSAPATFSLRWLVPKLSSFQVAHPAIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ I+   D  D  +R   P      +  + ++       AP  L+  R   +  
Sbjct: 126 RLSTSNEPIEKLRDKVDLIVR-GGPQAIDGYVAEEFLSEVRLPVCAPKLLEG-RPLRTPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WLA        PR S L +  +   +Q  + G G+A+ 
Sbjct: 184 DLAGFTLLHAATYPGMWPE---WLAAAGHANLVPRHS-LTLEHFYLTLQGALDGLGVAMG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V D+     LV+   +   P +  +     A      ++AF++++
Sbjct: 240 PIALVADDIAEGRLVQPFSEPALPPWRYFTYVAAARAEDDAVRAFKDWL 288


>gi|304398498|ref|ZP_07380371.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304354003|gb|EFM18377.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 298

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 122/294 (41%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + VF  V    SF+ AA  L  S+S +SR+I+ LE  +GI+L  R  R L LTE G
Sbjct: 6   NLTAMLVFARVVELQSFSEAARALGWSKSHVSREIARLELRLGIRLLQRTTRRLALTEMG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  +++  +  +Q+   +P+G +R+   +  G   +   L  FL  +  I 
Sbjct: 66  QAYYPYCVRMLAEVQRAEAFVQQLHQQPAGHIRLQAPVTFGCQCVVPVLNLFLRRHLHIN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L +++ D   D  D AI +R          R L  I    YAAP YL         
Sbjct: 126 VDLDLTDRNHDRLDDQTDLAIVIRSRSPQQGNF-RVLSDIDWGLYAAPAYLAQRPAITHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L +H+L+ F          F       + +     S  + N+ ++++   + GSGIA 
Sbjct: 185 EMLPRHDLLMFHGPAHTAALPFR---RDKQRLALDVRSRFRANNSMALLNAALAGSGIAY 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+ ++     ++ +++ +        Y    +       +    + +    
Sbjct: 242 LPSYMAQEAMARGDIQQLLPEWQMDRLQSYLLLHDHPDPVSPVTLLCDALVEAL 295


>gi|16519863|ref|NP_443983.1| putative transcription regulator of the LysR family [Sinorhizobium
           fredii NGR234]
 gi|2495403|sp|P55576|Y4MQ_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator
           y4mQ
 gi|2182535|gb|AAB91780.1| putative transcription regulator of the LysR family [Sinorhizobium
           fredii NGR234]
          Length = 298

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 123/297 (41%), Gaps = 16/297 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               +R+F   AR GSF  AAE+L+LS S++S  I  LE ++G+ LF R  R ++LT  G
Sbjct: 6   SLSAMRIFEAAARLGSFRAAAEELNLSPSAVSHAIMRLERDLGVALFERTTRSVSLTVAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L    S   +  E  +  +++ S   +  LR+         +L   L +FL   P I+
Sbjct: 66  QTLLNHAS---NAFEELRRGVEQISSNKAQLLRLHCAPSFAAQVLSPRLPQFLKENPGIE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++              D  I   +P+    LI   L    +    AP       +  S 
Sbjct: 123 VRVAASTNYARFVDGLFDADIVYGEPLNREDLIVIPLSEEIVLPLCAPDL---AHQIKSP 179

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L    LI       K ++  +W    D  +G P    +  +     +   V G GIAL
Sbjct: 180 RDLFHQPLIRSDL---KRIQWIDWFEAND--LGPPPSPSMSFDRSFLAVDAAVNGLGIAL 234

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTV--YFCYPEALKNTGKLKAFRNFIFLKAR 295
             D + +   ++  LVR +  +   +  +  Y  YP++       +AF +++  + +
Sbjct: 235 ESDVLARRELESGKLVRPLHRICRDNRYIGHYLAYPKSGSQRRLARAFADWLTRECQ 291


>gi|311105114|ref|YP_003977967.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310759803|gb|ADP15252.1| LysR substrate binding domain protein 1 [Achromobacter xylosoxidans
           A8]
          Length = 308

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 123/295 (41%), Gaps = 11/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L+ F V AR  SFT AA++L ++Q ++S+Q+  LE  VGI+LF R  +GL LTE G
Sbjct: 7   SLTDLQAFEVAARHSSFTRAAQELCVTQGAVSKQVKHLEEFVGIELFLRIRQGLVLTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                       ++E   +EL     +  G L +      G   L   L  F+ L PDI 
Sbjct: 67  RSYLTKIQAGLGQIEAATVELIAHQGQG-GTLNLTCMPTFGARWLIPRLTAFMRLRPDIH 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +   +  D S    D A+R  + I   S     +V   +    +P  +       + 
Sbjct: 126 VEFLPHRQGYDFSTPELDAAVRFGEGIWPGSG-ADYIVGREILPVCSPRLIP--GGCATP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  + L+     +    + F       R   E      + + Y  + Q    G G+AL
Sbjct: 183 ADLLAYPLLHHTSALDGWRDWFEQAGCDTRRSLE----GARFDQYALLSQAAAAGFGVAL 238

Query: 244 LPDYIVKDNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +P  +++D     ++   +  P       Y CYPE   N   L+AFR ++   +R
Sbjct: 239 IPRCLIEDELRDGKLAVAIQLPIRARMGYYLCYPEQKANLPTLQAFRTWLMEVSR 293


>gi|269964002|ref|ZP_06178308.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831221|gb|EEZ85374.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 310

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 122/294 (41%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  V    SF  AA QL++  +++SR+I  LE E+G KL  R  R L+LTE G
Sbjct: 10  EISALPLFARVIELNSFAEAARQLNVPTTTVSRKIQQLEAELGGKLINRSTRSLSLTELG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++      +   +     E ++++ KP G L I     L QNLL     EF   YP I+
Sbjct: 70  QQVLPKAQLIADTVSELYHEAEDAASKPIGTLNITAPRALSQNLLASLFAEFQARYPTIK 129

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L   N+  D++    D A RL  P+  SSL+   L  +      +        +    
Sbjct: 130 VNLASSNRYQDMTKQSLDFAFRLG-PLSDSSLVAISLSPVKYVLAISNALANALPKFEHP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++L+    I              W  ++ D  +       +  + +    Q C+ G+G+ 
Sbjct: 189 RQLNAAPCI----RNHVEGYFLPWRFSLKDEVVEVTEAGSVTTDDFFVSKQLCLDGAGVC 244

Query: 243 LLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  ++        L  I++D +    T+   Y +      K + F +FI  K
Sbjct: 245 YLPKSMLYQELQTQQLTVILDDWVPQDKTMLLVYQDRKHLPQKSQLFIDFIREK 298


>gi|207743176|ref|YP_002259568.1| hypothetical protein RSIPO_01343 [Ralstonia solanacearum IPO1609]
 gi|206594573|emb|CAQ61500.1| hypothetical protein RSIPO_01343 [Ralstonia solanacearum IPO1609]
          Length = 304

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/280 (21%), Positives = 119/280 (42%), Gaps = 9/280 (3%)

Query: 15  ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVY 74
           A  GSFT AA++L L +SS+S  +S LE ++G++LF R  R L LT+ G  L R    ++
Sbjct: 2   ATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGVRLFERSTRRLRLTDAGEALLRDAGPLF 61

Query: 75  HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDID 134
            +L     +   +   P+G LRIA   +     L   + E +  +  ++I++ +  + ID
Sbjct: 62  QRLREVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMREHAGLRIEVDVAPRQID 121

Query: 135 ISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
                 D  + + R+P+  S ++ +++  +      AP  L+         +L     + 
Sbjct: 122 PLAQGYDIMLTVPREPLPDSGMVAQRVFDLRRAVVIAPALLERLGPLTHPDQLLDWPCLG 181

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD-- 251
                     ++ +       +  P    ++ ++    +Q  V G G+A +     ++  
Sbjct: 182 LAGES-----EWQFRTPGGEALNLPLDFRMRTSNSELRLQAAVAGLGVARITSAFAEELI 236

Query: 252 -NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               L  ++    +P   VY  +P       K+K F + +
Sbjct: 237 AAGALREVLTGFQSPPMRVYAVFPGRRLMPAKVKVFMDAL 276


>gi|296160274|ref|ZP_06843092.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295889485|gb|EFG69285.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 329

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 121/293 (41%), Gaps = 7/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + +R++  V   GS + AA  L + Q + S +I  LE  +G +L  R AR L  T
Sbjct: 1   MNL-LEAMRIYVRVVERGSISSAARDLDIGQPAASERIDRLEKYLGCRLLLRSARALNCT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +  +  + + +E    E+        G +RIA     G+ ++   L      YP
Sbjct: 60  PDGVTFYERSRRILNAVEQAVAEVSNEEQALRGTVRIAAPHCFGETVVPRALTLVRAAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++LIL+++ +D++ +  D + RL + +   + I  +L  +     AAP YL      
Sbjct: 120 QLDLELILNDRTVDLATEGVDASFRLGQ-LGEGAFIACQLGQVGRVLVAAPEYLSRHGPV 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L KH  I    +          +  V      P  + ++ + +  + +  V G+G
Sbjct: 179 AAPPDLVKHPFIRLQGMFGTDQLPLRRMENVVESA--PVHTVVKTSHWRPMYEMIVSGAG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I ++ +    D   +  LVRI+       F ++           +++     +
Sbjct: 237 IGVVEEPACVDALTDGRLVRILPRFDALPFDLHVLTQAQRPVPARVRMVVTML 289


>gi|170691249|ref|ZP_02882414.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170143454|gb|EDT11617.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 295

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 124/291 (42%), Gaps = 6/291 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+  R    V + GS + AA  L ++Q +  R I  LE  + + LF R   GL  T+
Sbjct: 4   NIGWELYRTLLAVLQEGSLSGAARALGITQPTAGRHIEALERALKVSLFTRSQTGLQPTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +     + +   +  + +  G +R+A +  +G  +L   +      YP 
Sbjct: 64  IALALRPHAETMQSTAASLERAARSDAAQVQGAVRVAASEVVGAEVLPPIIAALRERYPQ 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++L+L N+  D+    AD A+R+ +P Q+  L+ R++  I +  +A   YL     P 
Sbjct: 124 LVVELVLSNRVEDLLKREADVAVRMMRPKQTQ-LVARRIGNIELGLHARRDYLAKHGTPR 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +   L +H +I +        +         R         ++ ++ L+ +     G+GI
Sbjct: 183 NAAALWQHAIIGYDRPSAFVRDASKAFPGYSRAGL-----SIRTDNDLAQLALIRAGAGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            +    + + + +LVR++  ++      +    E L+N+ + +A  + +  
Sbjct: 238 GVCQVALARRDKSLVRVLPKLVALRLDTWVTMHEDLRNSPRCRATFDALVE 288


>gi|222149289|ref|YP_002550246.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221736273|gb|ACM37236.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 300

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 118/296 (39%), Gaps = 9/296 (3%)

Query: 1   MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+      L  F  +AR  +F  A +   +S SS+S  +  LE  VG++L  R  R +TL
Sbjct: 1   MNDLPLADLDAFATIARLRNFRAAGKLRGVSASSLSEAMRRLEARVGVRLLNRTTRSVTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G++L    S     +E    ++ +   +P G+LR+     + + +L   +  FL  Y
Sbjct: 61  TDAGARLLERLSPTLADIELALDDINQFRERPFGRLRLNVPGIVARCVLPPVVTGFLAAY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNC 177
           PDI +++ +++  ID+  +  D  IR  + +    +I   +          AAP YL+  
Sbjct: 121 PDILLEVTVNDALIDVLAEGCDAGIRYEEALHQD-MIAVPIGPRRQRYVCVAAPSYLEQY 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P   ++L  H  I       +  E           I       L   +    +     
Sbjct: 180 GRPEHPRDLIHHRSILHRFNSGRVNEWH--FEREGEAINVSPPPRLIAETVDLELAAVRA 237

Query: 238 GSG-IALLPDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G +    D++++D     L R++ D        +  Y         L+ F ++I
Sbjct: 238 GLGMMGTFEDFVIEDLNAGRLERVLTDWEDEFSGPFLYYHSRRHMPVPLRVFVDYI 293


>gi|84684474|ref|ZP_01012375.1| transcriptional regulator, LysR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667453|gb|EAQ13922.1| transcriptional regulator, LysR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 294

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 136/291 (46%), Gaps = 10/291 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW  +R F  VA +GS + AA  L  SQ ++ RQ+  +ET +G++LF RHA+GL+LTE
Sbjct: 3   NLDWSLIRAFLAVAETGSLSAAARTLGSSQPTVGRQVREVETALGVELFQRHAKGLSLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ +      +   +    +      ++P+G +RI  ++ +   +L   L       P 
Sbjct: 63  TGAAMLSAAKRMRDSVGEIALIAAGQDMRPTGTVRITASVIVAHFVLPQILARLRRDEPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I+L+  +   ++    AD A+R+ +P Q   ++   +  + +  YAA  YL     P 
Sbjct: 123 IEIELVATDSSDNLLFREADIALRMYRPDQ-LDMVTLHVTDLPLGIYAAKSYLDRVGRPD 181

Query: 182 SIQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           ++++  K + + +   DL+ + M    W   VDR     R      +      Q    G 
Sbjct: 182 TVEDAFKLDWVGYDRSDLMLRGMRRLGW--AVDRTFFATR-----TDDQAGNWQLIRAGC 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +      +D P + R+  D+  PS  V+    EA++ T ++    + +
Sbjct: 235 GIGIAQIATAQDAPEVERLFPDMALPSLPVWLTAHEAMRRTPRIARVWDAL 285


>gi|117919555|ref|YP_868747.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611887|gb|ABK47341.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 299

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 16/298 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  +  +GSF+ AA++L +  +++SR+++ LE ++  +LF R  R L LTE+G
Sbjct: 8   ELQLIYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +    V  + +       +   KP G LRIA  I +   +    L EF  LYPDI+
Sbjct: 68  LALFQRYQSVIAQFDELSGVGSD---KPEGTLRIAAPISIISIIFIRALNEFGRLYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   N+ +D+     D AI +      SS +   L  +    +A P YL +  +    
Sbjct: 125 LHISQSNELVDLIDKGIDVAI-VGGAQPDSSWVSSTLGELDYRLFATPEYLASAPKLTHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWL--ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L+ H LI       K    FNW    +          + L +      +Q  +   GI
Sbjct: 184 DDLEAHQLI-------KVWPLFNWHLKHSNGESFYFNGPTKLTLTDLHGAIQATLDHGGI 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              P+  VK       L  ++ + I     +   Y +  +   K+K F  F+  KA +
Sbjct: 237 LYGPELFVKQQIKEGQLKVLLPEWIGEQRRISILYHQRSQQPLKVKVFIEFMQSKAPE 294


>gi|327481601|gb|AEA84911.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 301

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 121/298 (40%), Gaps = 8/298 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V  +G F  AA+   +S SS+S  +  LE ++G++L  R  R +T T  G
Sbjct: 5   NLSDVALFAAVVEAGGFRAAAQTRGMSASSLSDCVRRLEGDLGLRLLNRTTRSVTPTTAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L         ++     +L + S +P G L++   I + + +L   L  FL LYP + 
Sbjct: 65  ERLLERLRPALEEIHAAFNDLDDESQRPVGTLKLNVPIPVARFVLPDLLSRFLKLYPAVN 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY--AAPHYLKNCREPL 181
           ++++++N  ID+     D  +R  + +    +I   +          AAP YL     P 
Sbjct: 125 VEVVMENTFIDVIAAGYDAGVRYEESLAKD-MIAIPIGPRRQRFVAAAAPAYLAAHGTPR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL  H L+  G                 R +  P    L  +S+       + G GI
Sbjct: 184 HPSELTGHQLL--GHRFESGKLGVFEFEKDGRTLRVPPQGQLATSSHDLKTSAAINGLGI 241

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               +  +++   +  L  I+ED        +  Y         L+AF +F+  + ++
Sbjct: 242 IYTFEDFIREPLADGRLTPILEDWWQSFDGPFLYYHGRRHMPSPLRAFVDFLKAEGQE 299


>gi|206564150|ref|YP_002234913.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198040190|emb|CAR56173.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 308

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 108/289 (37%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 18  QALRAFESAARLASFTAAARELGSTQPAVSQQVYQLEAELGVPLFERSPRGVTLTADGEC 77

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 78  LYEAVRLSLDTLRGATATLRARRE--HGALTIVTDFGFATYWLMPRLAGLKRVMPDVDVR 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+ D AI        S    R L    +    AP +            
Sbjct: 136 VVTS-QDYDAQRDHGDIAILFGDGHWPSCTAAR-LFPESVTPVCAPAFRDAHPGVTRPDH 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    ++           P    +  NSY  ++   +LG G+AL  
Sbjct: 194 LLALPLLHVQPTRPERWLSWSGWFDAHGLEPPPAARGVTFNSYALVIHAALLGEGVALGW 253

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +      LV++++  +  S   +   P           FR ++ 
Sbjct: 254 SPLVDELVACGQLVKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 302


>gi|91779608|ref|YP_554816.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692268|gb|ABE35466.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 292

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 126/293 (43%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G 
Sbjct: 7   LNALRAFESSARHLSFTRAALELNVTQAAVSQQVRTLEERLGTALFKRLPRGLAMTDEGL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L  V ++ + ++E    + +         L +          L   LK F   +P +++
Sbjct: 67  ALRPVLTDAFDRIEAVLKQFEGGHFHE--VLTVGVVGTFAVGWLMPRLKSFRDAHPFVEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+ +N  +D++ +  D AIR        SL  R L+   +     P       +P   +
Sbjct: 125 RLLTNNNLVDLATEGLDFAIRFGDGTWPGSLASR-LLDAPLALLCTPEIAARLSKP---E 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  +  +W A    P    R      +S   +++  + G+GIAL 
Sbjct: 181 DLANETLL----RSYRADDWMSWFAAAGIPPRPIRGPVF--DSSRLMVEAAMQGAGIALA 234

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +         LVR  E V   + + +  + +    T  +  F  +I  +A
Sbjct: 235 PALMFDHEINTGRLVRPFE-VEVHAGSYWLTWLKGKPMTPAMLLFNQWIIKEA 286


>gi|330901104|gb|EGH32523.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 316

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 112/295 (37%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LT+
Sbjct: 7   DVSLDLLRAFEVAARLRSFTAAALELGTTQPAVSQQIKRLEEQLVTRLFDRIYRGIELTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  + PD
Sbjct: 67  AGEVLFSHVQAGLQSIDSGLIAITEHHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  +   + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESHWLFSEEVFPVCSPQLVAGRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNDALRDFPLLHLRGESINNWFDWAGVFRALDIPQAPAPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWKHLVDDLLDQGLLCRPIAGAAISGQGYYVVLPQRKRRVQIVQQFVDWLASE 298


>gi|163794750|ref|ZP_02188720.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
 gi|159180023|gb|EDP64548.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
          Length = 301

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 119/295 (40%), Gaps = 12/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L+ F   AR  S   A+E+L ++ S++S ++  LET +G+KLF+R  R L LT+ GS
Sbjct: 9   LSALQAFEATARRLSVRDASEELRVTPSAVSHRLRNLETAIGVKLFHRLNRQLILTDAGS 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +  +  L +   E+ E        L +       +  L   L  FL  +PDI +
Sbjct: 69  VYLSRVAPAFDALRSATSEIAERGSAD--TLTLTAPPSFAEIWLLPRLSRFLSAHPDIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D S +  D +IR  +      L+ RKLV   + A  AP       +     
Sbjct: 127 RVEASSRAVDFSREPVDASIRYGRG-DWPGLVARKLVEEQLVAVCAPSLQTGTYDVTEPG 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H LI     +        WL +      +   + L+ +     ++    G G+AL 
Sbjct: 186 DLARHTLIHSDQRLTSWT---AWLRSHGHGTVKGDRN-LRFSQSAHSLRAAADGLGVALE 241

Query: 245 PDYIVK---DNPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              +     D   LV    D+         +   P       K++A  +++  +A
Sbjct: 242 SRIMAAAYLDAGTLVEPFPDLAPADDGAAYHLVVPPDRSMLPKVRALDSWLTDEA 296


>gi|293611333|ref|ZP_06693630.1| predicted protein [Acinetobacter sp. SH024]
 gi|292826344|gb|EFF84712.1| predicted protein [Acinetobacter sp. SH024]
          Length = 301

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 130/296 (43%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + +R+F V A S +F  AA QL +S   ++R I  LE + G  LFYR  R + +T
Sbjct: 3   MQNKLEMMRIFCVAAESRNFKEAATQLGISPQVVTRAIKELEEQRGEILFYRSTRQIKIT 62

Query: 61  EQGSKLHRVTSEVYHKLETTQI-ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G +L +        ++   + + +E   +  G +R+  +  LG+ L+   L EF   Y
Sbjct: 63  ADGERLAKQARFAVGSIDALLVKDTKEKRDEMRGTVRLTVSSVLGRKLVIPALAEFATRY 122

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI +  +L +   D+  +  D  IR    +  +  + ++L  ++ ++   P  +     
Sbjct: 123 PDIVVDCVLTDSHSDVIDERIDIGIRFGF-LPDNRYVAKELAKVNFYSVGTPELIDKVGM 181

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P  I +LDK+ L    D   K    + W  T  R    P       +   +  Q  + G 
Sbjct: 182 PKKIIDLDKYPLTALVD--HKTGRYWPWTFTESRSF-TPSKPRFITDDLEAEFQAILAGV 238

Query: 240 GIALLPDYIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G   +P ++V     +  L++I+ +  +P + +Y   P+      +++A  +++  
Sbjct: 239 GFGHMPGFLVLPWLRSGKLIQILHEENSPVWRLYLYRPQRGPTPLRIRALFDYLAE 294


>gi|160897431|ref|YP_001563013.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363015|gb|ABX34628.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 302

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 120/282 (42%), Gaps = 6/282 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W+  R F  V  SGS + A   + L+Q ++ R I GLE+ +G++LF R + G   TE   
Sbjct: 11  WEWYRSFLQVLESGSLSAAGRAMGLAQPTVGRHIDGLESALGLQLFTRSSDGFAPTEAAY 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    + +       +           G +R+  +  +G  LL   L +    +P+++I
Sbjct: 71  ELQPYAASMAATAAALRRVAASHGAGVRGTVRLTASEVVGVELLPPVLAQLRAAHPELRI 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L N   D+    AD A+R+ +P Q  +L+ R +  I +  +A   YL     P S+Q
Sbjct: 131 ELVLSNAVDDLLRREADVAVRMFRP-QQEALVARHIGAIELGLHAHESYLARHGVPASLQ 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+LI F          F        P+       L  +S L+ +     G GI + 
Sbjct: 190 ELAGHSLIGFDHE-----NAFIRRFQQQFPMFTREAMALSSDSDLAQLGAIRAGFGIGIC 244

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAF 286
              +   +  LVR++    +     +    E L+ + +    
Sbjct: 245 QSALAARDAGLVRVLPQAFSWKLDTWVAMHEDLRKSERCAVV 286


>gi|320324724|gb|EFW80798.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328832|gb|EFW84831.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 319

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 116/292 (39%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G++L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECLGFAPASRKLGIPKSKLSRRIAGLEERLGVRLIHRSTRTFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +  S  +P G++ I+    L        +  F   +P +
Sbjct: 62  GRDYYAHCVAMLVEAEAAEEAILRSKSEPQGRVAISCPPALAAMGFNETIARFAADHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           Q+Q+   N+ +D   +  D A+R+R  P++   L+ + L        A P          
Sbjct: 122 QVQVESTNRRVDALTENIDIALRVRFPPLEDDGLVVKLLGHSAQRLVARPDLAARLSATS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +++ L     +      P    +  WL   T            L  +    ++Q  + G 
Sbjct: 182 TLEALSTLPSL----DTPSSSHEHRWLLETTSGHYAEIRHTPRLISSDLDMMLQAALQGV 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A LP+ IV++   +  LV +          V+  +         ++   +
Sbjct: 238 GVAQLPELIVREALQDGRLVELFSQHRPKCGIVHAVFASRRGLLPAVRGLLD 289


>gi|330002625|ref|ZP_08304380.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
 gi|328537245|gb|EGF63506.1| LysR substrate binding domain protein [Klebsiella sp. MS 92-3]
          Length = 298

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 111/292 (38%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AA +L ++ S++S+QI+ LE  + + LF R  R L LT  G 
Sbjct: 6   LNALRCFEAAARLLSLKLAASELCVTPSAVSQQIARLEETLNVPLFIRTPRRLQLTAVGD 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R     +H++      LQ        K+ I+ T       L   L +F   YP I+I
Sbjct: 66  IYLRAVQPAFHQIAAATQRLQVPPGPE--KVAISCTSGFAIQWLLPRLADFERRYPQIEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+   N+ +D+  +  D A+R         L   +L+   +    +P  +   R      
Sbjct: 124 QIGTTNRLVDLLSEGIDFAVRHGVGGW-PELQAYRLLDDDLMPVCSPQLIAPRRTLTDAS 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+         +    W   V       R   +  +S   + +    G G+ALL
Sbjct: 183 DLLQYPLLHDEHREDWAL----WCEAVGLAPHFARRGPVFTDSN-GVTEAAFAGMGMALL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               +        LV  +   I      +  Y E        + FR+++  +
Sbjct: 238 RRSFIAPALTQGRLVNPLAQPIACPLAYHLVYHETALLAPANRCFRDWLLGQ 289


>gi|330810385|ref|YP_004354847.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378493|gb|AEA69843.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 294

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 120/296 (40%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LR+   +AR  S + AA  L++S  ++S ++  LET +G+ L  R AR L+LT  
Sbjct: 2   ISLEDLRMAVTLARCESLSAAARALNVSPPALSMRLRKLETLLGLTLANRDARRLSLTAD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  R ++ +  +LE      ++   + +G LR+A     G+  L   L  F  L+P +
Sbjct: 62  GERFSRQSALLLEQLEALPESFRQQDDQLAGTLRLAAPFGYGRQRLAPLLARFARLHPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L           +D  I +   +  S  + R L        A+P YL+    PL+
Sbjct: 122 CLHLDLRETPW-PDRHDSDAVIHIGH-LSDSQWVARPLTQNDRWLCASPAYLEQNGTPLA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  I   +           L              L  N      ++   G G+ 
Sbjct: 180 PEQLAEHRCICIRENDEDVTLWH--LRNAHGRKTLRIKPALLSNDGSVARRWAEQGLGLV 237

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L   + V     +  LVR++ D    S  +    P     + +++A  +F+  + +
Sbjct: 238 LRSQWDVSKAIADGRLVRVLADWQFDSAPINLLVPSRKLRSARVQALASFLEAELK 293


>gi|121606888|ref|YP_984217.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595857|gb|ABM39296.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 295

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 126/297 (42%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L  F  V  SG+ T AA+QL  + S ISR +  LE ++G  L  R  R L LT
Sbjct: 1   MQITIEELLAFRTVVDSGTITAAADQLGQTVSGISRALGRLEKKLGTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G      +  +   L+  + EL      P+G LR+        + +   + EF  L+P
Sbjct: 61  EEGQIFLLRSRAILGALDAAEDELAARRQAPAGLLRVNAATPFMLHAIVPLVPEFSRLFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ ++D+     D AIR+ + ++ S+L  R L    +   A+P YL     P
Sbjct: 121 RISLELNTDDLNVDLLAQRTDIAIRIGE-LRDSTLHARPLGASRLRVLASPAYLAAHGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L  H  I    L         W               L  +S  ++    + G G
Sbjct: 180 KCVADLASHQRIGNSQLSSLN----QWPLRGPHGDSYAAAPTLSASSGETMRHLALAGMG 235

Query: 241 IALLPDYIV---KDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  L D++    +   +LV+++  + +     V   Y      + ++ AF +FI  +
Sbjct: 236 VVCLADFMTETDRQRGDLVQLLARETVESRQPVNAVYYRNTALSSRITAFLDFIAAR 292


>gi|70730993|ref|YP_260734.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345292|gb|AAY92898.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 301

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 122/278 (43%), Gaps = 6/278 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R F  V  SGS + A   + L+Q ++ R I  LE  +G+KLF R   G   TE   
Sbjct: 11  WDWYRTFLAVLDSGSLSAAGRAMGLTQPTVGRHIDQLEAALGLKLFTRSFDGFAATEAAL 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L     ++       +           G +RI+ +  +G  +L   L      +P + +
Sbjct: 71  ELKPYLLQLAAGEAALRRVASSHGAGVQGSVRISASEIIGVEVLPPILATLRQQHPQLVV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L N+  D+    AD A+R+ +P Q  +L+ R++  I +  +A   YL+    PLS++
Sbjct: 131 ELVLSNRADDLLQRQADIAVRMFRPTQ-EALLVRRVADIELGLHAHRDYLQQQGTPLSLE 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI F          F        P+        + +S L+ +     G GI   
Sbjct: 190 QLAGHALIGFDRETA-----FIRRLQQQYPMLARGAFAWRSDSDLAQLAALRAGFGIGAC 244

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
              + + +P LVR++ +   PS   +    E L+N+ +
Sbjct: 245 QVRLAEADPRLVRVLAEQFAPSLEAWVAMHEDLRNSPR 282


>gi|52842592|ref|YP_096391.1| LysR family transcriptional regulator [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52629703|gb|AAU28444.1| transcriptional regulator, LysR family [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 308

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 134/296 (45%), Gaps = 12/296 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     L+ F       SF+ AA++L++S S +S+QI+ LE E+ + L  R    L +T
Sbjct: 1   MNI-LSCLKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLIRSTTRLIVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L+    +++ +LE  ++       + +G +R+  T+      L     +F+  YP
Sbjct: 60  ESGHRLYEKALDLFEQLEVVKVIATPDQFELNGIIRLYLTVTPAIPYLTSLSIQFMRKYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I+I  I+ +   ++     D AI     ++ + L+ ++L +I  + +A+P Y+     P
Sbjct: 120 GIEIDFIVGSDTKELYSSTFDLAISF-DDVKHAKLVCKRLFSIQRNVFASPDYITQYGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I EL KHN +       +    FN                 + N+   + Q  V G G
Sbjct: 179 QTIDELPKHNCLINTLYGLQNKWVFN-------KKIIHVSGNFKSNNAGVLKQAAVAGLG 231

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + L P + V +      L++++    +P   +Y  YP+++ +  K+    NF   +
Sbjct: 232 LLLAPYFSVYEEIKNEALIQVLPHKSSPDINLYAIYPKSIMDEQKINLLLNFFVKR 287


>gi|323499578|ref|ZP_08104547.1| hypothetical protein VISI1226_08774 [Vibrio sinaloensis DSM 21326]
 gi|323315318|gb|EGA68360.1| hypothetical protein VISI1226_08774 [Vibrio sinaloensis DSM 21326]
          Length = 316

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 129/275 (46%), Gaps = 7/275 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSFT  +EQ ++ +S IS+QI  LE E+G++L  R  R L+LT  G+++      +   L
Sbjct: 17  GSFTKVSEQKNVDRSVISKQIRRLEEELGVRLLNRTTRSLSLTAAGNEMVNQAKSLRSLL 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
             T    Q    +P G LRI ++   G+  +Q  +  F   YPD++ +L L+++ +D+  
Sbjct: 77  SDTHRLAQNYHEEPRGVLRITSSTMFGRQYVQDAISVFQKQYPDVEFELRLEDRMVDMVQ 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           +  D   R+ +P ++SSLI RK+    +   AAP +L+   E  S+++L+      +   
Sbjct: 137 EGFDIGFRIGRP-KNSSLITRKIARSRLLIVAAPAFLEKHGEVNSLEKLESLPATIYA-A 194

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PN 254
                + F +     +          +VN    + +    G+ +A++   +V+D      
Sbjct: 195 PGLLFDKFGYQDEQGKQQHFQLNVAYKVNDVEMLARSAAGGNTLAVVTAQMVQDEIKQGK 254

Query: 255 LVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRN 288
           LV IM  +    F T Y  YP       K K F +
Sbjct: 255 LVPIMTHLNIDDFGTFYAVYPHRDA-PIKTKLFID 288


>gi|228958682|ref|ZP_04120398.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800998|gb|EEM47899.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 300

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 136/305 (44%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F   + + 
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQSIKI--ETPTPTIEIGLIYRKDKYMCAATRKFIEQLKIT 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|218682247|ref|ZP_03529848.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 894]
          Length = 304

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 128/295 (43%), Gaps = 12/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  +F+ AAE+L L+Q +ISRQI+ LE ++G+ LF R  RG+ LTE G+  
Sbjct: 14  ALAAFDSVARLSTFSAAAEELSLTQGAISRQIAALEEQLGVLLFERTGRGVILTEAGADY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +    ++ +    L   + + + +L +A     G   L   + +F+  +P+I +  
Sbjct: 74  ARAIASALAEIRSA--SLHAMTKQHNDQLNVAILPTFGTRWLMPRIPQFVARHPEITLNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   D  D AI + +P          L+   +   A+P +L +    L  ++L
Sbjct: 132 ATRIGVFDFDRDDIDMAIHIGQP-DWPGAESTFLMEEMVAPVASPPFLSSH-PILKAEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L+            F  L     P        ++   + ++ Q C+ G G+AL+P 
Sbjct: 190 LRLPLLQMASRPGAWGHFFESLQVSGTPS-----QAMRFEQFSNVAQACIAGLGLALMPL 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +++     N  LV+     +      Y   P + K+   + AFR ++  +   ++
Sbjct: 245 FLIDSELANGQLVQAFPHQVKSPSAYYAVAPLSRKDFRPVAAFRAWLLEEVALYQ 299


>gi|190891899|ref|YP_001978441.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190697178|gb|ACE91263.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 304

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 131/295 (44%), Gaps = 12/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  +F+ AAE+L L+Q +ISRQI+ LE ++G+ LF R +RG+ LTE G+  
Sbjct: 14  ALAAFDSVARLSTFSAAAEELSLTQGAISRQIAALEEQLGVLLFERTSRGVILTEAGTDY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +    ++ +    LQ  + + + +L +A     G   L   +  F+  +P+I +  
Sbjct: 74  ARAIAGALAEIRSA--SLQAMTKQHNDQLNLAILPTFGTRWLMPRIPRFVARHPEITLNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   D  D AI + +P          L+   +   A+P +L +    L+ ++L
Sbjct: 132 ATRIGLFDFDRDDIDMAIHIGQP-DWPGAESTFLMEEMVAPVASPSFLSSH-PILTAEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L+            F  L     P        ++   + S+ Q C+ G G+AL+P 
Sbjct: 190 LRLPLLQMASRPAAWSHFFESLQVDGTPS-----QAMRFEQFSSVAQACIAGLGLALMPV 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +++     N  LV+ +   +      Y   P + K+   + AFR ++  +   ++
Sbjct: 245 FLIDSELANGQLVQALPHQVKSPSAYYAVAPLSRKDFRPVVAFRAWLLEEVALYR 299


>gi|189348073|ref|YP_001941269.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189338211|dbj|BAG47279.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 295

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 126/288 (43%), Gaps = 12/288 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQI  LE ++G+ LF R  R + LT+ G +  
Sbjct: 13  LLVFEAAARHESYTRAADELSLSQSAISRQIQTLEDQLGVPLFRREGRSVKLTDVGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 73  AEVGGALGRIRGATLQ-AMSHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
               +ID  +D  D AI +        L   +L    + A A+P    +     +     
Sbjct: 132 SRIGNIDFHVDDLDAAIAVGTG-DWPGLHAHRLYNEFLIAIASPDAPPDANGERAPAWAA 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLPD 246
           +  L+    +         W A       + RI    ++ S+  ++Q    G GI L+P 
Sbjct: 191 RQTLLG---VTSNQHAWAEWFAHYRLDHRQMRIGPSFELTSH--LIQAVRAGMGIGLVPK 245

Query: 247 YIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +V+D      LV I  D IT   + Y  YP   ++   L AFR+++ 
Sbjct: 246 VLVEDELSRNELVSI-GDAITSRRSYYLVYPPENESLPSLAAFRDWLM 292


>gi|187919777|ref|YP_001888808.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718215|gb|ACD19438.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 304

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 110/294 (37%), Gaps = 12/294 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L +F   AR  SFT AA +L  +Q ++S+++  LE  +G  LF R  RG+TLTE G +
Sbjct: 11  QALTMFESAARLASFTAAARELGSTQPAVSQRVVQLEEALGAPLFERGHRGVTLTEDGER 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L          +     E++         L ++T        L   L +F  L PD+ ++
Sbjct: 71  LFEAVRHALDTIRLATSEIRARRTPQ--TLTLSTDFGFATYWLMPRLSQFKALMPDVDVK 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQR---KLVTIHMHAYAAPHYLKNCREPLS 182
           +I      D S D AD AI      + +    R   KL    +    +P +L       +
Sbjct: 129 IITSQSVFDPSHDQADIAIAFGD--EHADWTARGVVKLFPERVTPVCSPAFLAAHPSLRA 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L    L+      P     +                 +  NS+  +    ++G G+A
Sbjct: 187 PADLMNLPLLHLEPTQPARWLSWADWFAAHELDAPAAHRGITFNSFTLVAHAAIMGQGVA 246

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           L    +V +      L+ + E  +                T  + AFR+++  +
Sbjct: 247 LGWAPLVDELLATGQLIELFEPPVITERGYLLVT--QRTATPVVSAFRHWLLGE 298


>gi|33598111|ref|NP_885754.1| LysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33566669|emb|CAE38879.1| putative LysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 335

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 129/297 (43%), Gaps = 16/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VA+  SF+ AA  L +  S++SR+I+ LE  +G++L  R+ R L LT+ G+
Sbjct: 29  LNDIALFVEVAKRKSFSLAARALDMPTSTLSRRINQLEKAIGLRLINRNTRRLELTDAGT 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +    + +L+  + +P G+L I+    L   LL  +L  FL  YP+I  
Sbjct: 89  VYLLRCQGLIDETRLAREQLESLTGRPKGRLNISMPYSLAIWLLPTSLGAFLDSYPEIDC 148

Query: 125 QLILD-NKDIDISMDYADCAIRLRK-----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +  L+ N          D  +R  +          + +  +++++  + YA+  YL    
Sbjct: 149 EFDLNLNASATSQGAPFDVILRFGRDSGDDETPDPNTVVDEIISLDSYLYASEDYLARYG 208

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVL 237
           EP    +LD+H  +          E  +W       I    +S     + +S++     L
Sbjct: 209 EPRDPADLDRHECL----RTAIDPEHSHWTLHNGERIERVEVSGHVAGNNISVVGTLAGL 264

Query: 238 GSGIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP       V +  +L R++        ++Y  YP  +   G+ + F +F+
Sbjct: 265 GLGITRLPHCQALDPVIERNSLRRVLPQWRVQPISIYAVYPSPI-LPGRTRVFMDFV 320


>gi|86137120|ref|ZP_01055698.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
 gi|85826444|gb|EAQ46641.1| transcriptional regulator, LysR family protein [Roseobacter sp.
           MED193]
          Length = 299

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 139/293 (47%), Gaps = 11/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++ F  VA  GS + AA QL  SQ ++ R I  LE ++  +LF RH RGL L++ G
Sbjct: 8   DWSLIQSFLAVADCGSLSAAARQLSRSQPTLGRHIQSLEADLNQRLFERHPRGLQLSQAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L  +  E+  ++    ++    S + +G +RI  ++    +LL   L +     P I+
Sbjct: 68  TALLPMAREMQAQMYRLSLQAAGQSEELAGTVRITASVFAAHHLLPPILADIRREEPGIE 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+  ++  ++    AD A+R+ +P Q   +I + +  + +  +AA  YL     P + 
Sbjct: 128 LELVPTDESENLLFRAADIALRMYRPTQ-LDVITQHIADLPLGIFAAKSYLARRGRPSTS 186

Query: 184 QELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +EL +H+L+ +   DLI   M    W   VDR         ++ ++  +  Q    G GI
Sbjct: 187 EELWQHDLVGYDNNDLILNTMRQMGW--QVDRSAF-----AMRCDNQTTYWQLVRAGCGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                 + + +  +  +   V  P+  ++     A++ T +++   + +  KA
Sbjct: 240 GFCQSGVARADDCVAELDLGVEIPALPIWLTAHSAMRETPRIRRVWS-LLAKA 291


>gi|171321774|ref|ZP_02910683.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171092938|gb|EDT38181.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 330

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 136/291 (46%), Gaps = 11/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L +F     +GS + AA +L L +S++S++++ LE  +G +L +R +R   LT  G
Sbjct: 30  NLNDLYLFVQAVDAGSMSAAARRLDLPKSTVSKRVAELERTLGARLVHRTSRSFRLTPVG 89

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++          + E+ +  +   + +P+G +RI +++ + Q++L   L    L +P + 
Sbjct: 90  TEFFEHARAAVIEAESARDAVLRQASEPAGVVRITSSVPVAQHILAPCLPALALAHPKLL 149

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +Q+   ++ +DI+ +  D A+R    P+  S+L+QR L    +   AAP YL     P +
Sbjct: 150 LQIHASDRLVDIAQEGFDIAVRSHFAPLPDSALVQRPLAASPIVVVAAPTYLARAGTPDT 209

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H+ +  G       + +      D     PR+  LQ +    ++Q    G GIA
Sbjct: 210 PADLARHDGLHPGP------QPWRLQRGGDTVDVTPRL-RLQADESTLLLQAAAAGLGIA 262

Query: 243 LLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPD I      +  LVR++      + T     P        ++A   F+
Sbjct: 263 CLPDSIAGAALASGALVRVLPGWRAGTVTTTLLMPHRRGQLPGVRAAVEFL 313


>gi|313498168|gb|ADR59534.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 301

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 127/293 (43%), Gaps = 14/293 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D   +++ F  VA   SF  AA  L  S S+++R +  LE   G KL  R+A  +TL
Sbjct: 1   MALDMLREIQAFVSVAHKRSFVAAARALGRSPSAVTRAVQTLEDNAGSKLLNRNANAVTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L      +         EL   S    G +R A    LG+++L   L EF   +
Sbjct: 61  TEAGERLLPHAERLLDVQRDAADELAALSGSAQGWIRFAAPQLLGEHVLPQVLAEFSRRH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +   ++ +D      D  +R   P QSS LI   L     H YA+P YL     
Sbjct: 121 PQVTLDVQYSDEALDPLQGKFDFVVRGAFP-QSSELIGYPLWPYQRHLYASPAYLALAGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++LD H LI      P+ ++ +++          PR   L++ S  ++    + G+
Sbjct: 180 PQHPEDLDGHTLILH--TAPRILKAWHFCHDDQITSLRPR-PRLRLGSGGAVYHSALAGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLK 284
           GIA L  ++ +       LVR+       S +     ++  YP   +   +++
Sbjct: 237 GIARLAAWVGEAQVKAGRLVRVCPQYRLTSSSGQDPQMHAVYPAG-ELPTRVR 288


>gi|228908175|ref|ZP_04072023.1| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 200]
 gi|228851593|gb|EEM96399.1| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 200]
          Length = 300

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 135/305 (44%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKQLHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHCKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  ++LI    L+PK       + +  + +       L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYSLI----LLPKNFFLTELITSHCQKLNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   +RI  +  TP   +   Y +        + F   +   
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIRI--ENPTPIIEIGLIYRKDKYMCAATREFIEQLKST 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|218515582|ref|ZP_03512422.1| transcriptional regulator, LysR family protein [Rhizobium etli
           8C-3]
          Length = 299

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 113/298 (37%), Gaps = 14/298 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR+G F  AA     S S +S  +  LE E+G++L  R  R +  TE G  L
Sbjct: 3   DLNAFVAVARAGGFREAARGSGSSASFLSEAVRRLEAELGVRLLNRTTRSVVPTEAGKGL 62

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                    ++E     +     +P+G LR+   +   + +L   +  FL  YPDI++++
Sbjct: 63  LERLGPALTEVEAALDVVNGFRDRPAGSLRLNVPVSAARLVLPAIIPPFLAAYPDIRLEI 122

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCREPLSIQ 184
           + +   +D+     D  IR  + ++   +I   +          A+P YL     P    
Sbjct: 123 VAEESFVDVLAAGCDAGIRYDERLEQD-MIAIPIGPRRQRFATAASPAYLDRHGRPQHPS 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCL--QVNSYLSIMQYCVLGSGIA 242
           EL  H  +            + +    +    EP    +     +    +   + G+G+ 
Sbjct: 182 ELLDHACLLGRFDSGALTTPWEYERDGEVVRVEPSGPLIVKVGGATDLSVDAAIAGTGVI 241

Query: 243 ------LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                 L P +   D+  L  I+E         +  YP        L+AF +F+   A
Sbjct: 242 SIFEDWLRPYF---DSGVLEPILEPWWQRFSGPFLYYPGRRLVPAPLRAFIDFVKASA 296


>gi|167577771|ref|ZP_02370645.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 299

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 125/297 (42%), Gaps = 7/297 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L VF + A +GS + A+  L+++ +  S  +  LE+E+ ++L  R  R L LT  G 
Sbjct: 4   FDDLAVFVLAADNGSLSAASRLLNVAPAVASAAVKRLESELDVRLLARSTRSLRLTPDGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +          +L   +  L     +  G L ++   D G+N+L G L EFL LYP + +
Sbjct: 64  RYLAYARNALAELRAGKDALARGRDEVGGDLTLSIPSDFGRNVLSGWLDEFLALYPAVSL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
            + + ++ +++     D  +R   P   SSLI   L         A+P Y     +P + 
Sbjct: 124 HVRIGDRIVNLFRQPVDAVLRYGVP-DDSSLIAAPLAPDNRRVLCASPAYFARHGKPSTP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ + F   + +   D     + D             +    + ++ V G GIA 
Sbjct: 183 DDLSRHHCLRFA--LSERTHDQWTFHSGDVARTVKVTGNRVADDGELVRRWAVGGYGIAY 240

Query: 244 LPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                V D+    R+   ++   T +  +   Y   L  +  L A R+F+  +   +
Sbjct: 241 KSRLDVLDDLRAGRLESALDAWTTEATPLNLVYTHRLALSPTLDALRDFLRARIAAY 297


>gi|221135296|ref|ZP_03561599.1| DNA-binding transcriptional activator GcvA [Glaciecola sp.
           HTCC2999]
          Length = 297

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 122/295 (41%), Gaps = 11/295 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  SFT AA++L ++Q+++S QI  LE  + IKLF R  R L LTE G 
Sbjct: 7   LNALRAFEVAARHLSFTKAADELFVTQAAVSHQIKLLEEFLSIKLFLRKNRNLLLTEDGQ 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    +++  +      L   +    G + +A         L   + +F + YPDI +
Sbjct: 67  AYYFEIKDIFQHINDATERL--LTRGAKGSITVAMQPSFAAQWLVPRISQFSVAYPDIDV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     +  D AI   +  + S L   +L   ++    +P    + +   S+ 
Sbjct: 125 RIKAVDFDEGFLDESIDIAIYYGRG-RWSGLHSEQLHKEYLTPVCSPMLFTSNKPLNSLA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H  I   D   +  +   WL   +          +  +  + ++Q   LG G+AL 
Sbjct: 184 DLSEH--ILLHDSSRENWK--QWLKQFNMTNVNVNQGPM-FSHSMLVLQAAALGQGVALA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              + K   D+  L+    + +      Y     A     K+  FR ++  +  +
Sbjct: 239 NTMLAKPDIDSGRLICPFSERVESKDGFYIVSEIAHHEQEKITLFREWLLSQVEN 293


>gi|207723467|ref|YP_002253866.1| hypothetical protein RSMK00739 [Ralstonia solanacearum MolK2]
 gi|206588668|emb|CAQ35631.1| hypothetical protein RSMK00739 [Ralstonia solanacearum MolK2]
          Length = 304

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 120/283 (42%), Gaps = 9/283 (3%)

Query: 15  ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVY 74
           A  GSFT AA++L L +SS+S  +S LE ++G++LF R  R L LT+ G  L R    ++
Sbjct: 2   ATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGVRLFERSTRRLRLTDAGEALLRDAGPLF 61

Query: 75  HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDID 134
            +L     +   +   P+G LRIA   +     L   + E +  +  ++I++ +  + ID
Sbjct: 62  QRLREVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMREHAGLRIEVDVAPRQID 121

Query: 135 ISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
                 D  + + R+P+  S ++ +++  +      AP  L+         +L     + 
Sbjct: 122 PLAQGYDIMLTVPREPLPDSGMVAQRVFDLRRAVVIAPALLERLGPLTHPDQLLDWPCLG 181

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD-- 251
                     ++ +       +  P    ++ ++    +Q  V G G+A +     ++  
Sbjct: 182 LAGES-----EWQFRTPGGEALNLPLDFRMRTSNSELRLQAAVAGLGVARITSAFAEELI 236

Query: 252 -NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               L  ++    +P   VY  +P       K+K F + +  +
Sbjct: 237 AAGALREVLTGFQSPPMRVYAVFPGRRLMPAKVKVFMDALHRR 279


>gi|134302729|ref|YP_001122697.1| LysR family transcriptional regulator [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134050506|gb|ABO47577.1| Transcription regulator, LysR family [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 298

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +        FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT 
Sbjct: 6   NISISLFEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTH 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      + ++++  +   +    +PSG L+I+T+    QN+L   +KE+   +  
Sbjct: 66  EGMLLFNYCKTLQNEIDNIRDLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ ++ K  +   + AD  + +       +++ RK+ T      A+P Y+     P 
Sbjct: 126 VKIEVSIEEKMPNFKSNEADIILGVNW-TPPENIVARKIATTRYVLCASPAYINKNGSPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L  HN I     +   +         ++   +   S +  N+   I    +   GI
Sbjct: 185 NISDLANHNYIPHKSRVTPLVN-----IKKNKLNPQTLPSNISANNIEFIKACVLNDFGI 239

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A   +YIVK+      L+ +++D       +Y  YP+      K+K F N + 
Sbjct: 240 AQFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLVI 292


>gi|68249740|ref|YP_248852.1| DNA-binding transcriptional activator GcvA [Haemophilus influenzae
           86-028NP]
 gi|145639287|ref|ZP_01794893.1| glycine cleavage system transcriptional activator [Haemophilus
           influenzae PittII]
 gi|148828344|ref|YP_001293097.1| DNA-binding transcriptional activator GcvA [Haemophilus influenzae
           PittGG]
 gi|319897340|ref|YP_004135536.1| DNA-binding transcriptional dual regulator [Haemophilus influenzae
           F3031]
 gi|68057939|gb|AAX88192.1| glycine cleavage system transcriptional activator [Haemophilus
           influenzae 86-028NP]
 gi|145271590|gb|EDK11501.1| glycine cleavage system transcriptional activator [Haemophilus
           influenzae PittII]
 gi|148719586|gb|ABR00714.1| branched-chain amino acid aminotransferase [Haemophilus influenzae
           PittGG]
 gi|309751163|gb|ADO81147.1| Probable transcription activator GcvA [Haemophilus influenzae
           R2866]
 gi|317432845|emb|CBY81210.1| DNA-binding transcriptional dual regulator [Haemophilus influenzae
           F3031]
          Length = 297

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +GI+LF R  R L LTE G 
Sbjct: 8   LNSLKSFESAARYLSFTKAADELCVTQAAVSHQIKLLEEFLGIELFKRKNRSLELTELGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L      L      P   L I+     G   L  +L EF  LYP I++
Sbjct: 68  AYFVDINKILRRLNEATERLLTLKTDPH--LNISVPQTFGIQWLVPHLSEFNQLYPQIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI         +L   +L   ++   A+P  L      +  +
Sbjct: 126 RLTGVDQDEGLLNKEIDLAIYYGLG-NWQNLQVDRLCEENLLILASPELLAEN-PIIQPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH LI             N L   D  I +  +     +     +Q  + G GI L 
Sbjct: 184 DLKKHTLIHI-HTCDNWQAMANHLQLDDLNIQQGPL----FSHTFMALQAAIHGQGIVLA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +     +N +L  ++   +    + Y        +  K++AFR +I 
Sbjct: 239 NRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQAFRQWII 288


>gi|186471936|ref|YP_001863254.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184198245|gb|ACC76208.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 313

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 126/298 (42%), Gaps = 11/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR+F  VA  GSFT AA+QL +S +  +R ++ LE  +  +L  R  R +TLTE
Sbjct: 1   MDYLQSLRMFVKVAELGSFTGAADQLKVSSAVATRSVASLEERLDARLLQRTTRSVTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G         +   ++  +  L  ++  PSG LRIA    +G   L   L  +   +P 
Sbjct: 61  AGRLFLDRVRTIVDDIDDVEGGLLAATGVPSGTLRIAVQGSVGAGYLAKLLSAYTERHPR 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +  Q+I  +  I +     D A+       + S++ R    + M   A+P Y        
Sbjct: 121 VVPQVIFADGPISLVEGRFDAALTNDTYPHAGSVVVRAFAHLKMTLVASPRYTPGIHRIA 180

Query: 182 SIQELDKHNLITFGDLIPKCMED--FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           ++ ++D   ++T  D       D    WL T          + +  N+   + +  + G 
Sbjct: 181 NLTDIDPLVMLTLDDGTTGTEHDPVRRWLDT-----HTAHATRIHANNSDMLRRMAIEGM 235

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL+P  +V+   D+ +LV +  +   PS  +   Y         ++A  + +  +A
Sbjct: 236 GVALVPAVLVEDDLDDGSLVPVSSETALPSMGLSVAYGSRRNLAPNVRALVDLLVEQA 293


>gi|300115283|ref|YP_003761858.1| lysR family transcriptional regulator [Nitrosococcus watsonii
           C-113]
 gi|299541220|gb|ADJ29537.1| transcriptional regulator, LysR family [Nitrosococcus watsonii
           C-113]
          Length = 301

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 137/303 (45%), Gaps = 15/303 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +L VF  VAR  S+T AAE+LHLSQ ++S QI  LE  VG+ LF +  + + LT
Sbjct: 1   MHVTLRQLHVFEAVARHLSYTRAAEELHLSQPAVSMQIKQLEDNVGLALFEQLGKKIFLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L+  + ++  +L   +  L+E      G L IA         L   L  F   +P
Sbjct: 61  EAGRELYHYSQQISRELSEAEGVLEELKGSRRGTLTIAVASTATYFAL-HLLGRFHQRFP 119

Query: 121 DIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKN 176
           +  I L + N+      +  +  D AI + KP +S  ++ +  +   +   A P + L  
Sbjct: 120 EANISLDVTNRKSLLRHLEENTVDMAI-MGKPPESLEVVAKPFMENPLVVIAPPAHPLAG 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            R PL++  L +   I         +    + A +   I     S ++++S  +I Q   
Sbjct: 179 QRVPLTV--LRQETFILREHGSGTRIAMERFFARLGATI----TSSMEISSNEAIKQAVQ 232

Query: 237 LGSGIALLPDYIVKDNPNLVR--IME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+ ++  + ++    L R  I+E D        Y  Y +  + T   KAF+N +F +
Sbjct: 233 AGFGLGIVSQHTLEKELALQRLVILEVDSFPIMRHWYIVYRKNKRATALHKAFKNLVFEE 292

Query: 294 ARD 296
           AR+
Sbjct: 293 ARE 295


>gi|163751098|ref|ZP_02158328.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
 gi|161329054|gb|EDQ00126.1| transcriptional regulator, LysR family protein [Shewanella benthica
           KT99]
          Length = 296

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 128/295 (43%), Gaps = 21/295 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   AR  SF+ AA++L ++  +IS+QI GLE+ +G+ LF R  R L LT+   
Sbjct: 9   LNSLLAFESAARHLSFSKAADELFVTHGAISKQIKGLESFLGVPLFIRQHRKLLLTDDAQ 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       +     E++   ++    L I     L  N L   ++EF   +P + +
Sbjct: 69  GYLIQVQSALQTINNATDEIKSQQMRAQ-TLSINVLPSLTINWLIPRMEEFKQRHPHLYV 127

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L + +  +D      D AIR  +     ++ I  KL+   +    +P   +  +   ++
Sbjct: 128 DLSIGDFAVDFDNSRCDIAIRSAQHEPTDANFI--KLMDEDLCLVCSPLLAEQLK---TV 182

Query: 184 QELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++++K  L+   T  +L P   +      T D+  G        +  +  + Q    G G
Sbjct: 183 KDINKMTLLKHTTRPELWPYWSQQVGLTLTTDKKFG--------MEHFYMLSQAAAGGMG 234

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +AL+P + +++   + +LV   +   T  +  Y   P++   + K +AF +++  
Sbjct: 235 VALIPRFFIEEQLADGSLVIPFDTGFTSPYIYYVLTPKSSNLSLKAQAFIDWLLE 289


>gi|332307307|ref|YP_004435158.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174636|gb|AEE23890.1| transcriptional regulator, LysR family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 319

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 126/291 (43%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                L V   VA   S T AA QL +S S+ S  +  +E E+G +LF R  R L LT +
Sbjct: 1   MKIADLHVLLKVAELHSITAAANQLDMSSSAASVSLKRVEQELGAQLFVRTTRQLRLTTE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +   +  +    L+  Q+ + E     +G++R+A + ++G+NL++  L   +  Y  +
Sbjct: 61  GERYLPLCQQALGLLQQGQVLINEEQQSITGEVRMAVSSEMGRNLMRVLLNNIMRKYNTV 120

Query: 123 QIQLILDNKDIDISMDYADCAIR--LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++L   +   D   D  D A+R   +   +  +L   K+  I     AAP Y+    EP
Sbjct: 121 TLRLHASDSRADFYRDGVDVALRAITKDAAKDLNLYGFKVCNIPHVLCAAPTYIARHGEP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L  HN + +   + + + D   L   ++       S   VN    + ++CV G G
Sbjct: 181 QTPDDLPHHNALLYK--LYEVVHDGWELYQHEQKYKIKMNSDRAVNDGDIVRRWCVDGEG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           IA      V  +     L R+M +   P   ++   P     +  ++  R+
Sbjct: 239 IAKKSAIDVAQDLLAGRLKRLMPEYKIPLTEMWLVLPSRQLISPAIRLIRD 289


>gi|158422940|ref|YP_001524232.1| regulatory protein [Azorhizobium caulinodans ORS 571]
 gi|158329829|dbj|BAF87314.1| regulatory protein [Azorhizobium caulinodans ORS 571]
          Length = 300

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 137/298 (45%), Gaps = 11/298 (3%)

Query: 1   MSFD---WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M+FD    + + V   V  +GSF  A E L L+Q ++SR ++ LE  +GI++F R AR +
Sbjct: 1   MAFDSRLLNGIGVVSAVVEAGSFARAGEALGLTQPAVSRAVARLEQRIGIRIFNRTARSI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           +LT++G + +   + +   +E   +    +     G+LR+      G  +L   L  FL 
Sbjct: 61  SLTDEGRRYYEAVAPLIAGIEDATLSAGRAKALVRGRLRVNVDGAFGHFVLTRRLGAFLD 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YPD+ + + + +   D+  D  D A+R   P + S+L    L+   +   A+  Y+   
Sbjct: 121 QYPDLAVDVAVRDAMGDLVGDGFDVAVRFGYP-EPSNLRAELLLETRVLTCASASYIARY 179

Query: 178 REPLSIQELDK-HNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYC 235
             P   ++L   H  +   D  P     + W  +        + S  L V+   S++  C
Sbjct: 180 GAPSHPRDLVNGHQCVLLRD--PSTGRPYEWEFSRGGETIPFQASGRLMVHDTGSLIGGC 237

Query: 236 VLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + G G+A L +   ++      LV+++ +    +F +Y  +  +   + K+ AF +F+
Sbjct: 238 LGGIGMAQLLELYAENLLGEGKLVQMLPEWSDETFPLYAYHRASNLVSAKVSAFLSFV 295


>gi|83717543|ref|YP_439355.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83651368|gb|ABC35432.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 354

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 125/297 (42%), Gaps = 7/297 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L VF + A +GS + A+  L+++ +  S  +  LE+E+ ++L  R  R L LT  G 
Sbjct: 59  FDDLAVFVLAADNGSLSAASRLLNVAPAVASAAVKRLESELDVRLLARSTRSLRLTPDGE 118

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +          +L   +  L     +  G L ++   D G+N+L G L EFL LYP + +
Sbjct: 119 RYLAHARNALAELRAGKDALARGRDEVGGDLTLSIPSDFGRNVLSGWLDEFLALYPAVSL 178

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
            + + ++ +++     D  +R   P   SSLI   L         A+P Y     +P + 
Sbjct: 179 HVRIGDRIVNLFRQPVDAVLRYGVP-DDSSLIAAPLAPDNRRVLCASPAYFARHGKPSTP 237

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H+ + F   + +   D     + D             +    + ++ + G GIA 
Sbjct: 238 DDLSRHHCLRFA--LSERTHDQWTFHSGDVARTVKVTGNRVADDGELVRRWALGGYGIAY 295

Query: 244 LPDYIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
                V D+    R+   ++   T +  +   Y   L  +  L A R+F+  +   +
Sbjct: 296 KSRLDVLDDLRAGRLESALDAWTTEATPLNLVYTHRLALSPTLDALRDFLRARIAAY 352


>gi|182679697|ref|YP_001833843.1| LysR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635580|gb|ACB96354.1| transcriptional regulator, LysR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 298

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 123/291 (42%), Gaps = 11/291 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +GSF+ AA  L  + S++S+ ++ LE +VG +LF R  R LTLT++G    
Sbjct: 11  LIAFVRTVEAGSFSAAARDLGTTPSAVSKSVARLEKKVGTRLFLRSTRALTLTQEGQIFF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L+++   +  S    SG+LRI+ + +L   LL      F   +P + + + 
Sbjct: 71  DRIAPLLRDLDSSDDAI-GSQRMLSGRLRISMSGELAPLLLPRLFAGFASDHPHLILDIG 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D  +R       S LI R L  + M   A+P +L+    P S +EL 
Sbjct: 130 LTDRFVDLVREDYDVVLRAGDS-AGSDLIVRTLADLPMVIVASPSFLQIYDLPTSAEELA 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
                 F       M        +           +  +S  ++++    G G A L   
Sbjct: 189 NTPFARFK------MNGIPMPVRLGNGTAFVPSGRVDCDSGAALIEAARSGLGAAYLLRC 242

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +V ++     LV +   +  P       +        +++ F +FI  +A+
Sbjct: 243 LVANDLKAGTLVDVSPGITLPKLPFNVLHAFGRTVPMRVRFFCDFIADEAK 293


>gi|153001662|ref|YP_001367343.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|151366280|gb|ABS09280.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
          Length = 299

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 20/300 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  +  +GSF+ AA++L +  +++SR+++ LE ++  +LF R  R L LTE+G
Sbjct: 8   ELQLVYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +    V  + +         S KP G LRIA  I +   +    L EF  LYPDI+
Sbjct: 68  LALFQRYQSVVAQFDEL---SGAGSDKPEGTLRIAAPISIISIVFIQALNEFGRLYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   N+ +D+     D AI +      SS +   L  +    +A P YL    +    
Sbjct: 125 LHISQSNELVDLIDKGIDVAI-VGGAQPDSSWVSSTLGELDYCLFATPEYLAQAPKLEHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGS 239
             L+ H LI       K    FNW   +  P GE       + L +      +Q  +   
Sbjct: 184 DALEAHQLI-------KVWPLFNW--HLKHPSGESFYFNGPTKLTLTDLHGAIQATLGHG 234

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI   P+  VK       L  ++ + I     +   Y +  +   K++ F  F+  KA +
Sbjct: 235 GILYGPELFVKQQIKEGKLKVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPE 294


>gi|301169935|emb|CBW29539.1| DNA-binding transcriptional dual regulator [Haemophilus influenzae
           10810]
          Length = 297

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +GI+LF R  R L LTE G 
Sbjct: 8   LNSLKSFESAARYLSFTKAADELCVTQAAVSHQIKLLEEFLGIELFKRKNRSLELTELGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L      L      P   L I+     G   L  +L EF  LYP I++
Sbjct: 68  AYFVDINKILRRLNEATERLLMLKADPH--LNISVPQTFGIQWLVPHLSEFNQLYPQIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI         +L   +L   ++   A+P  L      +  +
Sbjct: 126 RLTGVDQDEGLLNKEIDLAIYYGLG-NWQNLQVDRLGEENLLILASPELLAEN-PIIQPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH LI             N L   D  I +  +     +     +Q  + G GI L 
Sbjct: 184 DLKKHTLIHI-HTCDNWQTMANHLQLDDLNIQQGPL----FSHTFMALQAAIHGQGIVLA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +     +N +L  ++   +    + Y        +  K++AFR +I 
Sbjct: 239 NRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQAFRQWII 288


>gi|159186045|ref|NP_356497.2| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159141179|gb|AAK89282.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 300

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 122/294 (41%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR G+FT AAE+L+L+QS++SRQI  LE + G++LF R  R + L+E G
Sbjct: 10  DIITLQAFECAARHGNFTRAAEELNLTQSAVSRQIGELEAQTGMQLFERIRRRVVLSEAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       +  + E   +    +    +  L +AT    G   L   L  F+   PD+ 
Sbjct: 70  RKFLPDVRRLLQQSEQLMVRAVSAGTSHA-SLSVATLPTFGSRWLMPRLSRFIDANPDMT 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +   +   D   +  D AI   +PI +       L    +   A+P  L+      + 
Sbjct: 129 ITIGSRSHPFDFDEEGFDLAIHYGQPIWAHG-TCTFLCNEVIVPVASPALLRRAGVNRA- 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L    L+          E       ++    +      + + +  I++    G G AL
Sbjct: 187 QDLAGQPLLHVTTRPKLWTEWLE----MNGVTADNAYQGSRFDQFSMIIEAAASGIGFAL 242

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++       L  + +  +    + Y   PE  ++    +AF+ ++  + 
Sbjct: 243 LPRYLIEAELASSRLEIVFDIPLQTDKSYYVALPEGRQDNVLARAFQAWLLDQV 296


>gi|319780964|ref|YP_004140440.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166852|gb|ADV10390.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 293

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 11/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    AA++L L+ +++SR+I+ LE  +  KLF R   G  LT  
Sbjct: 1   MNWDDVRIFLAVARAGQILGAAKRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +   +   +   +   +  +       SG +RI      G   L   L     L+ ++
Sbjct: 61  GERFLDIAERMEGDMIAARSTISGEGDDVSGTVRIGAPDGFGVAFLAKRLGALTALHREL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P +   L+  KLV   +  +A+  Y+     P +
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPTE-GRLVAGKLVDYSLGLFASRAYVDANGLPKT 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL +H LI +  DLI     D+    + D        +   ++S L   +    G+GI
Sbjct: 180 AAELGQHTLIGYVPDLIVSPSLDYAAEFSADW------RTSFAISSALGQAEAVRSGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
            +L  ++ +  P LV +  DV+ P     +  Y E+++   +++   +FI
Sbjct: 234 GILHTFVARSMPELVPV--DVVAPIRRAYWLVYHESVRPLRRVQIVASFI 281


>gi|171315429|ref|ZP_02904666.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171099429|gb|EDT44164.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 299

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 108/289 (37%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 11  QALRAFESAARLQSFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGVTLTSDGQC 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 71  LYEAVRVSLDTLRGATATLRARRE--HGALTIVTDFGFATYWLMPRLAGLKRVMPDVDVR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+AD AI        S    R L    +    +P +            
Sbjct: 129 VVTS-QDYDAQRDHADIAILFGDGHWPSCTAAR-LFPESVTPVCSPAFRAAHPHVARPDH 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    +                 +  NSY  ++   +LG G+AL  
Sbjct: 187 LHALPLLHVQATRPERWLSWAGWFDAHGLDALAAARGVTFNSYALVIHAALLGDGVALGW 246

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +   +  LV++++  +  S   +   P           FR ++ 
Sbjct: 247 SPLVDELVASGQLVKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 295


>gi|332993854|gb|AEF03909.1| LysR family transcriptional regulator [Alteromonas sp. SN2]
          Length = 278

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 111/255 (43%), Gaps = 11/255 (4%)

Query: 43  TEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID 102
            ++ ++L +R  R ++LT++G        EV   +E  Q  +   S  P G LR+     
Sbjct: 15  KKIWVRLIHRTTRKVSLTDEGKLFLPHAEEVLSSIEIAQAAVGVGSQTPQGTLRVTAPAS 74

Query: 103 LGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT 162
            G+  L   ++EFL  YP + I     +  +D+     D AIR    ++ S+L  RKL  
Sbjct: 75  FGRLHLVPAMEEFLASYPQLNIDFRFSDSILDLIEGGFDVAIR-DAVLKDSNLHARKLAD 133

Query: 163 IHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC 222
                 A+P Y+K    P + Q++ +H  +    L     +      T    +     + 
Sbjct: 134 DKRIIVASPDYIKKYGAPKTPQDIPQHAAVNLVGLETWEFD------TPQGVVSIKPKTR 187

Query: 223 LQVNSYLSIMQYCVLGSGIALLPDYI---VKDNPNLVRIMEDVITPSF-TVYFCYPEALK 278
           +++++  ++    + G+G+ L   +      ++  LV++++D    +   ++  YP    
Sbjct: 188 IRMDNGEAVRDAAIGGNGLTLTATWCSYPYLESGQLVQVLKDYPLTAECALWAVYPSNRL 247

Query: 279 NTGKLKAFRNFIFLK 293
              K++AF +F+  +
Sbjct: 248 LAPKVRAFIDFLKKR 262


>gi|330816309|ref|YP_004360014.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327368702|gb|AEA60058.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 316

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 126/294 (42%), Gaps = 7/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR-GLTLT 60
             +WD LR F  VAR  + + AA +L +  ++++R++  LE  +   LF +    G  LT
Sbjct: 10  RINWDDLRYFLAVARLQTASAAARRLGVDHTTVARRVRELEASLEAVLFEKSRAGGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L     E+   +++   + +  +   SG +RI +T   G   L   L  F   +P
Sbjct: 70  SEGQRLLAYADEIETAVQSASEQFKGGANLLSGHVRIGSTEGFGSFFLAPQLAHFARAHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +I I L+     + +S   AD AI L +P +    +  KL    +  Y    YL+     
Sbjct: 130 EISIDLLPVPHFVSLSKREADIAILLERP-ERGQYVHTKLCDYRLQLYGTRDYLRRHPVS 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + EL +H  + +   +    E      T+         + L   S ++     + G+ 
Sbjct: 189 PRLAELREHAFLNYVADLVFSPELLYLERTIPGAG-----ANLSTTSIVAQYHAALQGTA 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +A+LP ++   +  LV +    +  +   + C  E ++N  ++ A  +F+   A
Sbjct: 244 LAILPCFMAAPDERLVPVFPGEVAITRHFWLCCREDIRNLRRISALWDFLRESA 297


>gi|325524862|gb|EGD02811.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 279

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 108/268 (40%), Gaps = 5/268 (1%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
           + S +++ LE +V  +LF R  R L LT++G        +    L+     LQE      
Sbjct: 1   AASARLAKLEAKVATRLFERSTRQLRLTDEGRLYLNCCRQALQALDDADAMLQEGRNVVG 60

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           GK+R+++T D G+N L   L EF  L+PD+   L   +   ++  D  D AIR   P   
Sbjct: 61  GKVRLSSTSDFGRNQLLDWLDEFTTLHPDVTFSLTASDSASNLWQDEIDLAIRFAAP-PD 119

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
            +LI R+L        AAP YL+   +P    +L +                        
Sbjct: 120 GALIARRLAANRRVLCAAPSYLERHGQPADPHDLARFACNVITIASGPMNTWRFTRGDEV 179

Query: 213 RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTV 269
           +    P  +  + N      ++ + G GIAL   + + D+     L  ++ +       +
Sbjct: 180 QTYTVPVSTAFETNDGGLTREWTLRGHGIALKSLWDIADDVRAGRLRVLLPEWRHQDAPL 239

Query: 270 YFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           +  Y        +++   +F+  + AR+
Sbjct: 240 HAIYHSKRYMAPRVRVLLDFLAERFARE 267


>gi|325527487|gb|EGD04818.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 301

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 119/292 (40%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF RH R + LT+ G 
Sbjct: 8   LNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGRPLFERHNRRVELTDAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++       Q+        LR++         L   L  F + +P I++
Sbjct: 68  GYLAEVGASFDRI--ALATAQQFGHGQQRVLRVSAPATFSLRWLVPKLSSFQVAHPSIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ I+   D  D  +R   P      +  + ++       AP  L+      +  
Sbjct: 126 RLSTSNEPIEKLRDKVDLIVR-GGPQAVDGYVSEEFLSEVRLPVCAPKLLERTPL-RTPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WLA        PR S L +  +   +Q  + G G+A+ 
Sbjct: 184 DLADFTLLHAATYPGMWPE---WLAAAGHANLVPRQS-LTLEHFYLTLQGALDGLGVAMG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V D+     LV+   +   P +  +     +  +   ++AF++++ L 
Sbjct: 240 PIALVADDIAEGRLVQPFSEPALPPWRYFTYVAASRADDDAVRAFKDWLKLA 291


>gi|307321817|ref|ZP_07601204.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306892558|gb|EFN23357.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 307

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 120/292 (41%), Gaps = 13/292 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VAR+G F  AA    +S S++S  +  LE E+G++L  R  R +  TE G  L   
Sbjct: 13  AFMKVARAGGFREAARASDISASALSDAVRRLEAELGVRLLNRTTRSVVPTEAGRGLMER 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
               + ++       +    +P+G LR+   +   + +L   +  FL  YP+I+++++ +
Sbjct: 73  LGPAFGEINAALDFARGFRNRPAGVLRLNVPVSAARLVLPPIVPPFLAAYPNIRLEIVTE 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDK 188
              +D+     D  IR  + +Q   +       +  +A  A+  YL     P   ++L  
Sbjct: 133 ESFVDVVAAGCDAGIRYDERLQQDMIAVPIGPRVQRYASGASQAYLDAHGRPQHPRDLLS 192

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSI-MQYCVLGSGIA---- 242
           H+ I  G    + +  + +    +    +P  S  +Q      + +   + G+GI     
Sbjct: 193 HSCIR-GRFAGRPISPWEFERDGEVITIDPPTSLVVQAGGGSDLGIAAAIAGTGIISLFE 251

Query: 243 --LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             L P +   +N  L  ++E         +  YP        L+AF +FI  
Sbjct: 252 DWLRPHF---ENGALEPVLEPWWLSFPGPFLYYPGRRLVPAPLRAFIDFIRA 300


>gi|218458900|ref|ZP_03498991.1| transcriptional regulator, LysR family protein [Rhizobium etli Kim
           5]
          Length = 281

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 114/281 (40%), Gaps = 6/281 (2%)

Query: 19  SFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLE 78
            F  A+  L + +S +SR+IS LE  +G +L  R  R   +T+ G   +     +  + +
Sbjct: 1   GFASASRDLKIPRSKLSRRISRLEDGLGARLIERSTRHFRVTDIGQAFYERCQTILQEAD 60

Query: 79  TTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMD 138
             +  + E+   P G +R+A  + L    + G L EFL  YP I++Q+I  ++  D+  +
Sbjct: 61  RAKSIVTEAQSDPQGVVRMACPLGLVDIAVGGILPEFLERYPKIKLQIIGSDRRADLINE 120

Query: 139 YADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
             D  +R   +P   +SL  RKL        A+P  ++       + +L     +     
Sbjct: 121 RIDLEVRATNEPETQTSLTMRKLDRARRILVASPSLVERSGGLNCVDDLADLPTLAMTSW 180

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PN 254
           +      +  +   D          L   S  +I+     G G  LL +   + +     
Sbjct: 181 V--SFHTWELIGPNDDKRVIRHQPRLTCRSMTAILDAARAGLGFGLLLESACEADLQAGR 238

Query: 255 LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+R++ +  +     Y  +  A      ++   +F+  K+R
Sbjct: 239 LIRVLPEWQSEESQFYIVFTTARGMPPAVRVLIDFLVEKSR 279


>gi|283836066|ref|ZP_06355807.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
 gi|291068253|gb|EFE06362.1| transcriptional regulator, LysR family [Citrobacter youngae ATCC
           29220]
          Length = 300

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 121/296 (40%), Gaps = 9/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F  + L +F   A   SF+ AA ++ +  + +S  I  LE+ + I+LF R  R L LT +
Sbjct: 2   FRLEDLTLFVRAAALNSFSDAAREVGVQPAQVSSAIKRLESTLSIRLFARSTRSLRLTPE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        ++   +     ++Q    + SG L+IA   DLG+NLL    + F   YP +
Sbjct: 62  GEVWLPYARQMLDVMHAGLQKIQTPEDEVSGTLQIAVPSDLGRNLLLPVFQSFRRRYPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPL 181
           ++++   ++  D+  D  D A R     + +S I   +         A+P ++     P 
Sbjct: 122 RLRIFFSDQVTDVFKDPVDVAFRYGN-TEDASYIALPVAPGNRRVLVASPDWVLQNGAPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           +  +L + N +TF   + +      W  T    +   ++   +  +    I +  + G G
Sbjct: 181 TPDDLAQLNAMTF---VLRGRLHDRWAFTRGGEVSSVQVNGTIMSDDAEVIRRLAIAGEG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA      V ++     L  +M D       +    P   + +  ++   + +  +
Sbjct: 238 IAYKSWLDVSEDVREGRLQLLMTDYQGEKVPLNMICPHRKQLSTAVRLLHDAVKAR 293


>gi|332534688|ref|ZP_08410519.1| putative transcriptional regulatory protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035900|gb|EGI72382.1| putative transcriptional regulatory protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 296

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 127/291 (43%), Gaps = 14/291 (4%)

Query: 15  ARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVY 74
             +GSFT AA+   +  SS+SR+++ LE  +G  L  R  R + LTE G   +    ++ 
Sbjct: 2   VETGSFTKAAKAFGVPPSSLSRRVADLEKSLGATLLKRSTRIVKLTEVGQIYYNDVQQIL 61

Query: 75  HKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDID 134
           ++LE +   ++     P G+L I++ +  G  +L   L EF  LYP+I + + L ++   
Sbjct: 62  NQLEQSHETVRSYQTTPMGRLCISSMVSFGDKILLPLLDEFSALYPEIILDVSLSDELST 121

Query: 135 ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF 194
           +  D  D AIR      +  ++  KL+       A+P YL+    P ++ EL  H+ + F
Sbjct: 122 LGRDDVDIAIR-GGYAPNERVLAIKLMDNGFIPVASPCYLQKFGVPTNVMELKGHSGLYF 180

Query: 195 GDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIALLPDYIVK--- 250
                       WL  VD    +     + + N+   + +    G GI +   + +    
Sbjct: 181 KTPAGPT----PWLCKVDEQWHDVSGPAVAISNNGSWLAKKACNGEGILMSTRWALDSYL 236

Query: 251 DNPNLVRI-----MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++  L  +     +      +  VY  Y +      K+KA  +F+  + ++
Sbjct: 237 ESGQLQELKFEHELAISQNATMAVYLLYQKQRYLVPKVKAAVDFLVQRIKE 287


>gi|239817288|ref|YP_002946198.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239803865|gb|ACS20932.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 301

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 134/282 (47%), Gaps = 8/282 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L+ F  VA  GSF+ AA +L +S++S S+ ++ LE    ++L  R  R +TLT+
Sbjct: 1   MDGFSLLKTFLEVANVGSFSRAAGKLGISKASASKHVATLEARFNVRLMNRSTRSVTLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L   ++ +   +E+TQ ELQ    +PSG+LR+A    L Q      L EFL LYPD
Sbjct: 61  AGRLLQLRSAPLMEMVESTQSELQAHGSRPSGRLRVAGLHGLVQTDFPSLLSEFLTLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + I L + N+ +D+  +  D A+R  + I   +LI R+L  + +   A P Y      P 
Sbjct: 121 VHIDLQIGNRVVDLVEEGVDIALRFGR-IGDENLIVRRLQRVELTLCATPSYWARRGIPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              ++  H+++T+          F        P   P    +  N   +++   + G G 
Sbjct: 180 MPDDMRWHDVLTYSLSAGAPHIPFE---VDGEPYNLPIYGRMDANDSGTLIAAALAGIGA 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNT 280
             +P  + +   +  +LV ++++ +     +Y  Y +   N+
Sbjct: 237 VCVPALLAQPYTERGSLVPVLKEFMPRDIWLYAVYTQRRHNS 278


>gi|206971377|ref|ZP_03232327.1| transcriptional regulator, LysR family [Bacillus cereus AH1134]
 gi|206733362|gb|EDZ50534.1| transcriptional regulator, LysR family [Bacillus cereus AH1134]
          Length = 300

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 135/305 (44%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLRNELDIGITF-LPVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F   +   
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFIEQLKST 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|288960422|ref|YP_003450762.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912730|dbj|BAI74218.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 310

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 122/296 (41%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D + +F  V  +G  + A  +L + +S+++R+I  LE  +G+KLF+R AR  T T  G 
Sbjct: 4   LDDMYLFKCVVEAGGLSAAGRRLGMPKSTLARRIGELEERLGLKLFHRGARQFTPTNFGI 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  + +   +  + +   PSG L +     LG  L++    EFL   P +++
Sbjct: 64  ECFEHCKTIASEADKLLVMAERARRSPSGFLHVVCPPVLGAVLVEALAAEFLASAPGVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L       D     AD  I     P+  +SL+ RK++T      A   +L     P   
Sbjct: 124 HLEESFGIFDPRGVQADLVIFPSFTPLPDASLVARKILTSPYILVAHRDFLARNGHPADP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L   N +  G      +         +    EPR          +++Q      GIA 
Sbjct: 184 ADLKPMNCLGLGSRSSDWVWTLTRGDRTEVVRFEPR---FSTTLPTAVLQAVHRQLGIAS 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LP+ +  ++    +LVR+++       T+Y  YP     T   + F + + L+  +
Sbjct: 241 LPEALCLNDLRSGDLVRVLDGWYPQPVTIYAIYPNNRTLTVAARQFLDLLVLRFPE 296


>gi|56461290|ref|YP_156571.1| LysR family transcriptional regulator [Idiomarina loihiensis L2TR]
 gi|56180300|gb|AAV83022.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR]
          Length = 308

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 134/297 (45%), Gaps = 8/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           ++  D +R F +VA+ GSF  AA  L +  S++SR+I+ LE ++ ++LF R A  + LT 
Sbjct: 11  NYSLDDMRCFCMVAQYGSFKQAAVALQMPLSTLSRRIAKLEQDLALRLFNRDAHRVQLTF 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G + +R ++ ++ +L+     LQ+   +  G +RI+  I+    +L  +   F+  YPD
Sbjct: 71  AGQRYYRRSAPIFDELDNVAACLQQDRNEAKGTIRISAPINFSVQVLVHHFNAFMRQYPD 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ L L N+ IDI  +  D A R+     ++  I R+L  I       P  L       
Sbjct: 131 IELDLKLSNQTIDIDEEAMDLAFRIGHH-SATHWIGRQLTNIRFAICG-PANLD-VSHIK 187

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L     +    ++   ++  +  +   +         L+V+    + +    G G+
Sbjct: 188 APADLAGLPTVLCSPMLTWSLQHIH--SGEKQAYTATDNIRLKVDDMSLLTEVIAGGIGV 245

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +PDY  +   ++  +  I+      +      Y +      +++ F +F+  + +
Sbjct: 246 GFIPDYHAQPLLESGKIQHILPAWSNQARGCEMLYRDRENIPYRVRLFIDFMLQRFK 302


>gi|330899493|gb|EGH30912.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 294

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 122/290 (42%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+   ++R  S + AA  L++S  ++S ++  LET++GI L  R AR L+LT  G 
Sbjct: 4   IEDLRLAVTLSRCESLSAAARILNVSPPALSMRLRKLETQLGITLASRDARRLSLTADGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R ++++  +LE+     ++   +  G LR+A     G+  +   L  F  L+P + +
Sbjct: 64  RFARESAQLLEQLESLPESFRQRDERLVGTLRLAAPFGYGRQRIAPLLARFARLHPQLCL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L           +D  I +   +  S  I R L   H    A+  Y++    P +  
Sbjct: 124 QLDLRETPW-PDRHDSDAVIHIGS-LNDSQWIARPLAQNHRWLCASLAYIEQHGVPSTPD 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I   +          W  +  +     RI   L  N      ++   G GI L
Sbjct: 182 QLAGHRCICIRENDEDVTL---WHLSKGQTKKTLRIEPALLSNDGSVARRWAEQGLGIVL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              + V D   +  LVR++ D    S  +    P     + +++A   F+
Sbjct: 239 RSQWDVSDAIASGRLVRVLADWQLASAPINLLVPVRKHRSARVQALTEFL 288


>gi|163858809|ref|YP_001633107.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262537|emb|CAP44840.1| transcriptional regulator, LysR family [Bordetella petrii]
          Length = 306

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 126/296 (42%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   L  F VVA  G F   A Q   S S++S  +  LET++G++L +R  R +  T
Sbjct: 1   MKPNLSDLNAFVVVAAKG-FRGGARQSGASASAVSEAVRRLETQLGVRLLHRTTRSVVPT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    +    ++E     +     +P+G LR+   I   + +L   +  FL  YP
Sbjct: 60  EAGQRLLERLAPALGEVEAALDVVNNFRERPAGTLRLNVPISAVRLVLPAIVPGFLAAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCRE 179
           DI + ++ D+  +D+  +  D  IR  + ++   +       +   A  AAP YLK    
Sbjct: 120 DIVLHVVADDNFVDVLAEGCDAGIRYDERLEQDMIAVPIGPRVQRFACAAAPGYLKRHGR 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP--RISCLQVNSYLSIMQYCVL 237
           P   +E+ KH+ + F       M  + +    +    EP  R+      +    ++  V 
Sbjct: 180 PRHPREILKHSCLRFR-FHSGVMPAWEFTRKKETLKLEPPARLIVQAGAAVDLAIETAVA 238

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+G+  L +  ++   D   L  ++ED        +  YP        LKAF  ++
Sbjct: 239 GTGMIYLFEDWLRPYLDRGELEPVLEDWWPAFSGPFLYYPGRRFVPAALKAFVAYV 294


>gi|320326692|gb|EFW82737.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 316

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 112/295 (37%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR   FT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LTE
Sbjct: 7   DMSLDLLRAFEVAARLRIFTAAAIELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  + PD
Sbjct: 67  AGKILFSHVQAGLQSIDSGLIAITEQHQHE--VLQVATDFAFAAYWLMPRLHRFHKVNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  +   + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVAVLFGDGRFKQG-ESHWLFSEEVFPVCSPQLITGRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             + L    L+           D+  +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNEALRDFPLLHLRGESSNNWFDWAGVFRALDIPQAPTPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWKHLVDDLLDQGLLCRPIAGAAISGQGYYVVLPQRKRRVQIVQQFMDWLASE 298


>gi|299533899|ref|ZP_07047265.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298718126|gb|EFI59117.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 294

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 127/299 (42%), Gaps = 12/299 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS+    LR F  V +  S   AA+ LH++  ++S+QI  LE  +G+ L  R   G+ LT
Sbjct: 1   MSYPLQALRTFVEVGQRKSVKAAAQALHVTPGAVSQQIRVLEDRLGVVLLERERLGMRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+ ++    E + +++     L+ S  +    L ++T      + L   L  F  L+P
Sbjct: 61  EAGASVYPRLHEAFLQIDQAMHALERSKGER--SLTVSTVATFAASWLVPRLGRFKQLHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI+I++   ++ +D+  D  D A+R         L    L+   +   A+P +LK C+  
Sbjct: 119 DIEIRVEATSELVDLRRDRVDVALRHGLG-DYPGLEVTCLMAPVLTPVASPEFLKTCQGA 177

Query: 181 L--SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           +     +   + L+  GD     +    WL                      +++    G
Sbjct: 178 VINEAGDCLDYPLLHDGDRADWPL----WLKAHGVADDARAQRGSAFEDDFLLIRAAEAG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+AL+P    ++      LV++++      F  Y        +  +++AF ++I  +A
Sbjct: 234 QGLALVPQAYAQEEIATGRLVQVLDKPWPARFAYYAVTRPGAADRPEVRAFLDWIRAEA 292


>gi|145635043|ref|ZP_01790749.1| DNA-dependent helicase II [Haemophilus influenzae PittAA]
 gi|229844851|ref|ZP_04464989.1| DNA-binding transcriptional activator GcvA [Haemophilus influenzae
           6P18H1]
 gi|145267651|gb|EDK07649.1| DNA-dependent helicase II [Haemophilus influenzae PittAA]
 gi|229812232|gb|EEP47923.1| DNA-binding transcriptional activator GcvA [Haemophilus influenzae
           6P18H1]
          Length = 297

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 121/290 (41%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +GI+LF R  R L LTE G 
Sbjct: 8   LNSLKSFESAARYLSFTKAADELCVTQAAVSHQIKLLEEFLGIELFKRKNRSLELTELGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L      L      P   L I+     G   L  +L EF  LYP I++
Sbjct: 68  AYFVDINKILRRLNEATERLLTLKTDPH--LNISVPQTFGIQWLVPHLSEFNQLYPQIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI         +L   +L   ++  +A+P  L      +  +
Sbjct: 126 RLTGVDQDEGLLNKEIDLAIYYGLG-NWQNLQVDRLGEENLLIFASPELLDKN-PIIQPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH LI             N L   D  I +  +     +     +Q  + G GI L 
Sbjct: 184 DLKKHTLIHI-HTRDNWQAMANHLQLDDLNIQQGPL----FSHTFMALQAAIHGQGIVLA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +     +N +L  ++   +    + Y        +  K++AFR +I 
Sbjct: 239 NRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQAFRQWII 288


>gi|114769210|ref|ZP_01446836.1| putative transcriptional regulatory protein (LysR family) [alpha
           proteobacterium HTCC2255]
 gi|114550127|gb|EAU53008.1| putative transcriptional regulatory protein (LysR family) [alpha
           proteobacterium HTCC2255]
          Length = 306

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 135/304 (44%), Gaps = 16/304 (5%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F  +A + SF+  A+   +  SS+SR+I  LE  +G++LF R  R ++LT+
Sbjct: 1   MDQLRALRYFSKLAETLSFSETADYFRVPSSSVSRRIKDLEETLGVELFLRTTRSVSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G             +E      +  SV PSG +RI       +  +   +     LYPD
Sbjct: 61  LGILYLAEIKTALQTIEIADEMCKAQSVSPSGTVRITAMPGYAELYVLPAIDRMRALYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++  L + ++ +++S + AD AIR    +    ++ R+L   +    AAP ++     P 
Sbjct: 121 LEFDLNVTDQMLNLSNNDADIAIRATSDLPDQ-VVARQLNKHNFILVAAPDFINKNGSPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSG 240
           +  +L+K  +  +    P+ +   NW A  ++   +  ++     N   S+++  V G G
Sbjct: 180 TSDDLNKFPVFMY--RTPRGV--LNWQAQKNQIWKDIELTPKYVTNHGPSLLESVVEGRG 235

Query: 241 IALLPDYIVKDN---PNLVRI-MEDVITP-----SFTVYFCYPEALKNTGKLKAFRNFIF 291
           IALLP + V        L ++ ++D           ++Y  Y        K+K   +F++
Sbjct: 236 IALLPSWGVAKEIAAGELQKVALQDGRLSTNGDVEMSIYLLYHPPKFQLKKIKLTVDFLY 295

Query: 292 LKAR 295
            + +
Sbjct: 296 RELK 299


>gi|289664775|ref|ZP_06486356.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669239|ref|ZP_06490314.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 304

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 6/281 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+  R F  V   GS + AA  L L+Q ++ R ++ LE  + + LF R   GL  T+
Sbjct: 4   TISWELYRSFLAVLEEGSLSAAARALGLTQPTVGRHVAALEELLAVPLFVRSQTGLLPTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
               L      +       Q           G +RI+ +  +G  +L   L      +  
Sbjct: 64  AAQALRLHARAMADMAAALQRAAGRHGDALQGTVRISASEVVGAEILPPILAALRNAHAQ 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++++L+L N+  D+    AD A+R+ +P Q   L+ R++  I +  +A P Y+     P 
Sbjct: 124 LRMELVLSNRVQDLLHREADVAVRMIRPQQD-LLVARRVGEIAIGLHAHPDYVDRHGVPQ 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H L+ F    P     F   A    P  E     L+ +S L+ +     G GI
Sbjct: 183 RPDDLAQHALVGFDTDTP-----FLRSARKGFPFWEHAAFALRADSDLAQLALIRAGCGI 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
                 + +  P L+ ++   +  +  V+    + L+ +  
Sbjct: 238 GFCQAALARRTPRLLPVLPQQVGVALDVWVTMHQDLRASAA 278


>gi|152980095|ref|YP_001353263.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151280172|gb|ABR88582.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 298

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 122/298 (40%), Gaps = 11/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F   A  G  + AA +L ++ ++ S  +  LE  +G +LF R  R L LT  G 
Sbjct: 6   IEDLMLFVRAADCGGLSAAARELDIAPAAASAALKRLEAALGARLFVRSTRSLRLTTDGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       V   ++     +   +    G L ++   DLG+N++   L EF   +P I++
Sbjct: 66  RYLVHARAVLLAVDEGAASVARDAQTIGGDLSLSIPSDLGRNVMLPWLDEFQAQHPAIRL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           ++ + ++  D+     D AIR  +P + S ++   LV        A+P Y K    P   
Sbjct: 126 RIRISDRLADLYRQTIDVAIRYGEP-EDSGMVALPLVPDNRRVLCASPAYFKRHPLPKKP 184

Query: 184 QELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L  HN + F  GD I +  + +         +   RIS    +    + ++ + G+G+
Sbjct: 185 SDLQSHNCLRFVLGDAIHERWDFWRNKKMETVVVDGDRIS----DDGDLVRRWALAGNGL 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A      V  +     L+  + +       +       L  +  + + R+F+  +   
Sbjct: 241 AYKSRLDVSQDLKKGRLLAALPNYQGELAPLNLVCAHRLMLSPAVVSLRDFLRQRLEQ 298


>gi|145637053|ref|ZP_01792716.1| glycine cleavage system transcriptional activator [Haemophilus
           influenzae PittHH]
 gi|145269707|gb|EDK09647.1| glycine cleavage system transcriptional activator [Haemophilus
           influenzae PittHH]
 gi|309973342|gb|ADO96543.1| Probable transcription activator GcvA [Haemophilus influenzae
           R2846]
          Length = 297

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +GI+LF R  R L LTE G 
Sbjct: 8   LNSLKSFESAARYLSFTKAADELCVTQAAVSHQIKLLEEFLGIELFKRKNRSLELTELGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L      L      P   L I+     G   L  +L EF  LYP I++
Sbjct: 68  AYFVDINKILRRLNEATERLLMLKADPH--LNISVPQTFGIQWLVPHLSEFNQLYPQIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI         +L   +L   ++   A+P  L      +  +
Sbjct: 126 RLTGVDQDEGLLNKEIDLAIYYGLG-NWQNLQVDRLGEENLLILASPELLAEN-PIIQPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH LI             N L   D  I +  +     +     +Q  + G GI L 
Sbjct: 184 DLKKHTLIHI-HTCDNWQAMANHLQLDDLNIQQGPL----FSHTFMALQAAIHGQGIVLA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +     +N +L  ++   +    + Y        +  K++AFR +I 
Sbjct: 239 NRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQAFRQWII 288


>gi|298290356|ref|YP_003692295.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296926867|gb|ADH87676.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 304

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 128/301 (42%), Gaps = 11/301 (3%)

Query: 3   FDWDK-LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    LR F      GS T AA  L ++Q ++++ +  LE  VG +L  R AR +  T 
Sbjct: 1   MDLAAALRAFVRTVERGSVTAAARDLAVTQPAVTKHLRNLERHVGARLLERSARLVRPTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG+ L+  +      +++    ++       G LRI     LG   L G + EF   +P 
Sbjct: 61  QGAALYETSRSALASIDSALEGVRRDMGAIEGTLRIHAPACLGARRLHGIVMEFQAAHPG 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + LIL+N+ +D+  +  D A++  +P +   L+ R+L  +     AAP +L  C    
Sbjct: 121 VNVDLILENRSVDLVYENLDLAVKYGRP-EGQDLVIRRLGLVRRVLVAAPSFLARCGPVD 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE----PRISCLQVNSYLSIMQYCVL 237
           +++ L + +++T   ++     D   L     P+GE    P    L+ N+   I Q  + 
Sbjct: 180 TLERLSEVDIVTTPAVVSP--RDMLMLQRAGTPLGESIEVPVRPVLRTNAAEVIEQTLLG 237

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G     +       +     LVR++ +        +  YP        ++AF +F     
Sbjct: 238 GHAAGPVQVLFAARDLAAGRLVRLLPEYEVRPSEAFLAYPSVRFMRPVVRAFTDFAVPAL 297

Query: 295 R 295
           R
Sbjct: 298 R 298


>gi|187930944|ref|YP_001890928.1| transcription regulator, LysR family [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187711853|gb|ACD30150.1| transcription regulator, LysR family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 298

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +        FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT 
Sbjct: 6   NISISLFEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTH 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      + ++++  +   +    +PSG L+I+T+    QN+L   +KE+   +  
Sbjct: 66  EGMLLFNYCKTLQNEIDNIRDLAESFHKEPSGTLKISTSSLFAQNILINLIKEYSKKFSK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ ++ K  +   + AD  + +       +++ RK+ T      A+P Y+     P 
Sbjct: 126 VKIEVSIEEKMPNFKSNEADIILGVNW-TPPENIVARKIATTRYVLCASPAYINKNGSPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L  HN I     +   +         ++   +   S +  N+   I    +   GI
Sbjct: 185 NISDLANHNYIPHKSRVTPLVN-----IKKNKLNPQTLPSNISANNIEFIKACVLNDFGI 239

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A   +YIVK+      L+ +++D       +Y  YP+      K+K F N + 
Sbjct: 240 AQFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLVI 292


>gi|307305197|ref|ZP_07584946.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306902537|gb|EFN33132.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 307

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 120/292 (41%), Gaps = 13/292 (4%)

Query: 10  VFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRV 69
            F  VAR+G F  AA    +S S++S  +  LE E+G++L  R  R +  TE G  L   
Sbjct: 13  AFMKVARAGGFREAARASDISASALSDAVRRLEAELGVRLLNRTTRSVVPTEAGRGLMER 72

Query: 70  TSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILD 129
               + ++       +    +P+G LR+   +   + +L   +  FL  YP+I+++++ +
Sbjct: 73  LGPAFGEINAALDFARGFRNRPAGVLRLNVPVSAARLVLPPIVPPFLAAYPNIRLEIVTE 132

Query: 130 NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQELDK 188
              +D+     D  IR  + +Q   +       +  +A  A+  YL     P   ++L  
Sbjct: 133 ESFVDVVAAGCDAGIRYDERLQQDMIAVPIGPRVQRYASGASQAYLDAHGRPQHPRDLLS 192

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSI-MQYCVLGSGIA---- 242
           H+ I  G    + +  + +    +    +P  S  +Q      + +   + G+GI     
Sbjct: 193 HSCIR-GRFAGRPISPWEFERDGEVITIDPPTSLVVQAGGGSDLGIAAAIAGTGIISLFE 251

Query: 243 --LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             L P +   +N  L  ++E         +  YP        L+AF +FI  
Sbjct: 252 DWLRPHF---ENGALEPVLEPWWLSFPGPFLYYPGRRLVPASLRAFIDFIRA 300


>gi|66046235|ref|YP_236076.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63256942|gb|AAY38038.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 319

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 116/292 (39%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G++L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECLGFAPASRKLGIPKSKLSRRIAGLEERLGVRLIHRSTRTFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +  S  +P G++ I+    L        +  F   +P +
Sbjct: 62  GRDYYAHCVAMLVEAEAAEEAILRSKSEPQGRVVISCPPALAAMGFNETIARFAAEHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+   N+ +D   +  D A+R+R  P++   L+ +KL        A            
Sbjct: 122 QIQVESTNRRVDPLTENIDIALRVRFPPLEDDGLVVKKLGHSAQRLVARADLAARLSATP 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S+  L     +     +P    +  WL                L  +    ++Q  + G 
Sbjct: 182 SLDALSTLPSL----DMPSSNHEHRWLLETHPGHYAEIRHTPRLISSDLDMMLQAALQGV 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A LP+ IV++   +  LV +  +       V+  +         ++   +
Sbjct: 238 GVAQLPELIVREALQDGRLVELFSEHRPKCGIVHAVFASRRGLLPAVRGLLD 289


>gi|124268707|ref|YP_001022711.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124261482|gb|ABM96476.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 319

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 140/301 (46%), Gaps = 13/301 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           W  +     +A+SGSFT AA++L LS++++S++I+ LE  VG+ L  R  R + LTE G 
Sbjct: 15  WPHVHALGTIAQSGSFTLAAQRLGLSKAAVSQRIAELERAVGVPLLQRTTRSVRLTEAGK 74

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L   T+  + ++E + + +++ + +P G +R+   + LG+  +   L+ FL  +P I++
Sbjct: 75  QLVDETAASFAQIEQSLLGVRDLASQPQGLVRMTAPVALGRQHVGPQLESFLRAWPGIRV 134

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L ++ ++++ +  D A+R       S  +  KL        A+P YL+    P    
Sbjct: 135 ELDLSDRLVNLAHEGFDLAVRHTSAPPDSH-VAWKLCASRTLLLASPAYLRRRGTPRHPD 193

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-----LQVNSYLSIMQYCVLGS 239
           EL  H+ + +    P  +  F   AT  R     R        L+ N+   +    + G 
Sbjct: 194 ELAGHDCLPYLRSGP-ALWAFEQAATRGRRSEPERARVTVTGLLRANNSEVLRDAVLAGL 252

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+ALLPD+          L  ++ D     F    +Y   P + +    +++    +   
Sbjct: 253 GLALLPDFSAAAAVKAGRLREVLPDWRPVGFFGDAIYALRPFSAQVPRAVRSLVEHLRAA 312

Query: 294 A 294
            
Sbjct: 313 L 313


>gi|300312785|ref|YP_003776877.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300075570|gb|ADJ64969.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/279 (22%), Positives = 120/279 (43%), Gaps = 6/279 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+  R F  V  +GS + A  ++ L+Q ++ R I  LE+ +G+KLF R   G + T+  
Sbjct: 7   NWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFSPTDAA 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +       +        +  G +R+  +  +   +L   L      +P+++
Sbjct: 67  LELKPYAAAIAANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRHRHPELR 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L NK  D+    AD A+R+ +P Q + L+ ++L +I +  +A   YL     P S+
Sbjct: 127 VELVLSNKADDLLQREADIAVRMFRPAQDA-LVAKRLGSIELGLHAHQSYLTVHGAPKSV 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L  H LI F             +  + R         L+ +S L+ +     G GI +
Sbjct: 186 DALADHTLIGFDQESAYVRNVLKQIPWLSRAAL-----ALRTDSDLAQLAAIRAGFGIGI 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
               +   +  LVR++          +    E L+ + +
Sbjct: 241 CQVALAARDVALVRLLPRQFALKMETWVAMHEDLRASPR 279


>gi|241764398|ref|ZP_04762423.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241366188|gb|EER60759.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 311

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 117/294 (39%), Gaps = 10/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  GSF  AA  L LS   ++R ++ LE  +G +L  R  R L LT+ G    
Sbjct: 7   MRVFQTVAEEGSFAAAARALDLSPPGVTRLVADLEQHLGTRLLQRTTRKLALTDAGEAYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    + H++E  +     S+    G +R+     L  + L   + ++ + +P + + ++
Sbjct: 67  QRVRAILHEIEDAEAAAVASTRDLRGTVRVLAAPVLATHFLAPMVAQWHVRFPRLLLDIL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +      +D  D           ++++ R ++       AAPHYL     P     L 
Sbjct: 127 V-DPFPSSRVDEFDVTFMAAGEDYDANIVARPMIQGEAIVIAAPHYLHRMGLPTEPAHLQ 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN------SYLSIMQYCVLGSGI 241
            H  +     + +          +    G      +++       S   +++  V G G+
Sbjct: 186 NHEYLRDSGQVSRTTNGAARKLRLQPAQGSGPAQEVEMEVVLHCVSTDVLLRAAVDGMGV 245

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A++   +      +  LV ++ D I   +TVY   P       + K F +F+  
Sbjct: 246 AVMSRLLAAPFLASGALVHVLPDWIFSRYTVYAALPSRRMMPARTKVFVDFVSE 299


>gi|254255338|ref|ZP_04948654.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124901075|gb|EAY71825.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 311

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 122/299 (40%), Gaps = 8/299 (2%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M     + L++F   A  GSF+ AA +  L    +S  I  LE E+  +LF R  R L L
Sbjct: 1   MKMVRLEDLQLFVRTAALGSFSSAAREADLLPGQVSAAIQRLERELDARLFARSTRSLKL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G +      EV   +   +  L        G LRIA   D+G+N L   L  F   +
Sbjct: 61  TAEGEQYLPYAEEVLSTIHEGRERLHGDKHALQGTLRIAAPSDIGRNGLLSWLGAFRDAH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCR 178
           P + ++L L +   D+  D  D AIR   P +++S +   L         A+P Y+K   
Sbjct: 121 PKLVLKLSLSDHVTDVFRDPVDVAIRYGAP-EAASYVALPLAENNRRVLVASPEYVKRHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P S+ EL  H+ + +  L  +  + +++ A   R     +   L  +      ++ V G
Sbjct: 180 APASLDELVLHDCLPYV-LAGRVYDRWSFPAGGVRRQVTVK-GMLLCDDAEIARRWAVEG 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            GIA      V D+     L  ++ +    +  +    P   + +  ++     +  + 
Sbjct: 238 RGIAYKSWLDVHDDVRAGRLTVLLPEQRGEAAPLSLVCPHRRQFSPAVRYLHAHLRERV 296


>gi|148553577|ref|YP_001261159.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498767|gb|ABQ67021.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 325

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 9/291 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEV-GIKLFYRHARGLTLT 60
           +  WD L+ F  +AR+G  T AA QL +  +++ R+I  LE  + G  LF +   G  LT
Sbjct: 10  AMHWDDLQFFLSLARTGLLTIAARQLDVDATTVGRRIRRLERSLGGQTLFVQGRDGHVLT 69

Query: 61  EQGSKLHRVTSEVYHKLET-TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           E G +L      +  + +       Q       G LR++ +   G  ++  +L EF   +
Sbjct: 70  EAGRRLLARVETIEREADAIAGGGDQADGEDVRGHLRVSASEGFGTWMVAHHLGEFAGAH 129

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + I L  ++  +D S   AD AI L +P Q   LI +KL    +  YAA  YL     
Sbjct: 130 PHLSIDLAANSGFLDPSRREADVAILLARP-QRGPLITKKLSDYRLCLYAARAYLDRHPP 188

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             +  +L  H +I +   +    E           +G    + L+ +S  +  +    GS
Sbjct: 189 IAARSDLPAHRMIGYVPDLLYSPE-----LNYLDELGPAVEARLRSSSINAQYRMVAAGS 243

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +LP +I   +  LVR++ +V   + + +    +  ++  +   F  ++
Sbjct: 244 GIGVLPCFIGDRDGALVRVLPEVAI-TRSFWLVTHQDSRHLPRTALFVEWL 293


>gi|221068492|ref|ZP_03544597.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
 gi|220713515|gb|EED68883.1| transcriptional regulator, LysR family [Comamonas testosteroni
           KF-1]
          Length = 314

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 136/300 (45%), Gaps = 13/300 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   +  F      GS   AA QL +S ++ S+ I+ LE E+G +L  R  R + LTE G
Sbjct: 3   NLRAIETFVKALEGGSIASAARQLGISPAAASQNIARLERELGTRLITRTTRSMALTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +     + V  +LE  Q +L     +  G+LRIA     G+++L   L  F  L+P ++
Sbjct: 63  ERYLARVAPVLGELEKAQSDLSLIHGELQGRLRIACMSAFGRHMLAPLLPAFTALHPRLE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L++ ++ +D+  +  D ++R R  ++   +  R L +      A+P YL+    P + 
Sbjct: 123 LELLITDRHVDVLKEDVDISVRYRDVLE-PGMSVRLLASAPRILCASPQYLQQHGRPQTA 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           QEL +H  + +       +  + +L    R   + +I+ +  +   +++++   G GIA 
Sbjct: 182 QELLEHACLLYRRERDGRLMRWPFLRDGQRTDPQQKIAAI-GSDIDALVEFAAAGGGIAW 240

Query: 244 LPDYIVKDNPNLVRIMEDVITP-----------SFTVYFCYPEALKNTGKLKAFRNFIFL 292
              +IV +     R++   + P               + C+ +      K++A  +++  
Sbjct: 241 AGSFIVHEELRRGRLVPLALKPARKGQLQFEDVPLDFFACFKDRQYVPAKVRALVDYLLQ 300


>gi|206576573|ref|YP_002239000.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206565631|gb|ACI07407.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 301

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 14/299 (4%)

Query: 1   MSFDW---DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS      + LR F   AR  S   AA +L ++ S++S+QI+ LE  +   LF R  R L
Sbjct: 1   MSMKLPPLNALRCFEAAARLLSLKQAASELCVTASAVSQQIARLEEALNTPLFIRTPRQL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G    R     + ++      LQ  +     K+ ++ T       L   L +F  
Sbjct: 61  QLTEVGEIYLRAVQPAFLQIAAATQRLQVPAGPE--KVTLSCTSGFAIQWLLPRLADFER 118

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP I+IQ+   N+ +D+  +  D A+R         L   +L+   +    +P  +   
Sbjct: 119 RYPKIEIQIGTTNRRVDLLSEGIDFAVRHGVGGW-PELQAYRLLDDDLIPVCSPQLIAPR 177

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R      +L ++ L+         +    W   V       R   +  +S   + +    
Sbjct: 178 RSLAGAGDLLQYPLLHDEHREDWAL----WCEAVGLEPDRARRGPVFTDSN-GVTEAAFA 232

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G G+ALL    +        LV  +   I      +  Y E        + FR+++  +
Sbjct: 233 GMGMALLRRSFIASALTQGRLVNPLAQPIACPLAYHLVYHETALLAPANRCFRDWLLGQ 291


>gi|153840622|ref|ZP_01993289.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149745714|gb|EDM56844.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 255

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 111/247 (44%), Gaps = 5/247 (2%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ +F  + +  +FT AA+ L +S S +S+Q+S LE  +GIKL  R  R  T TE G   
Sbjct: 8   QMVIFSALIKHKNFTAAAKSLGVSVSHVSKQLSQLEESLGIKLVQRTTRSFTPTEAGKTF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +    +V   + +  +E++    + +G +R+  +   G   +   ++E   LYP +Q+++
Sbjct: 68  YHHCEQVVQAVSSATLEMESQRDEVAGLVRLGLSQSFGTLHIIPAIQELRELYPQLQVEV 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
            L +  +D+  +  D  +   + +     I ++L        A+P YL     P    +L
Sbjct: 128 HLFDYKVDMLAEGLDLWVTNNEHLP-EGYIAQRLTDCQFVVAASPDYLLKYDTPTEPNDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLP 245
             HN + +        +   W  T  +     ++S    V+   ++    + G GIA L 
Sbjct: 187 SLHNCLIYRS---WERDYTGWAFTKGQQELNVKVSGNYSVDLAEAVRDAAIAGWGIAYLA 243

Query: 246 DYIVKDN 252
            Y++ D 
Sbjct: 244 TYLLGDE 250


>gi|153011271|ref|YP_001372485.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151563159|gb|ABS16656.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 295

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 121/293 (41%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF   AR  SFT AAE+L ++Q+++S QI  LE  VG  LF R  R + LTE G 
Sbjct: 8   LSAIRVFESAARHASFTRAAEELGMTQAAVSYQIKILEERVGAPLFLRMPRQVELTELGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    +E +  +      L+E +    G L I+       N L   L  F + +P + +
Sbjct: 68  QLAPAITEAFETMRNAFASLREDAE---GTLSISVLATFAANWLAHRLGSFQMRHPSLAV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  ID +    D AIR     +   L   +L+        +P             
Sbjct: 125 RLDTSDSMIDFATTNVDIAIRSGFG-KWPGLEAHQLIKASFTPMLSPALAATIGGVKEPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +  +I   D  P     F      +  +     S L         +  V G G+ +L
Sbjct: 184 DLLRLKIIDVSD--PWWNIWFKAAGIENPQMQGNTQSRLGAQHIEG--RATVAGQGVGIL 239

Query: 245 -PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            P +   +     L++  + +     + +  YP++ +NT K++AFR +I  + 
Sbjct: 240 TPAFHQIEIATGQLIQPFDILGDDGRSYWLVYPKSRRNTPKVRAFREWILSEL 292


>gi|104780739|ref|YP_607237.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95109726|emb|CAK14427.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 318

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 76/306 (24%), Positives = 138/306 (45%), Gaps = 19/306 (6%)

Query: 1   MSFDW--DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
           MS D   ++L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    + 
Sbjct: 1   MSPDILTEQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDNLESAVGSRLFSRSTHAVR 60

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            T  G+        +  +L   + E    S  P G +RI      G+  L   + +FL+ 
Sbjct: 61  ATPAGNAFAERARRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLVA 120

Query: 119 YPDIQIQLILDNKDIDI---SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLK 175
           YP + +QL L +  +D+    +   D  +R   P+  + L+   L  +   A A+P YL 
Sbjct: 121 YPGLDVQLRLIDSFVDLHGSHLGEVDLVLRAG-PLADTRLVATPLAYMVRIACASPAYLA 179

Query: 176 NCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQ 233
           +   P    EL +H+ + +  L P     F W  +VD  +   R + ++   N+  +++ 
Sbjct: 180 SRGVPACPSELPEHDGLDWDGLAP----PFAWRFSVDGQVRLYRPARMRMAANNAETLLF 235

Query: 234 YCVLGSGIALLPDYIVKD---NPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFR 287
             + G GIA LP +++ D      L+ +  D       +  +Y    E   N+ + +   
Sbjct: 236 GALAGLGIAHLPTWLISDYLLRGELIPLFCDNGLPEPETSGIYALRLEHETNS-RSRLLL 294

Query: 288 NFIFLK 293
            F+  +
Sbjct: 295 EFLKSR 300


>gi|148549734|ref|YP_001269836.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513792|gb|ABQ80652.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 316

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 127/290 (43%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-ARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 10  ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N    
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQGYLDNHAPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L KH  I++ D +    E       +           L+  S ++     + G G
Sbjct: 189 RQVTDLAKHPFISYVDDLAFSSELLYLANLIPNASAH-----LRSTSVIAQYTAALQGRG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +P LV ++ + I  +   +    E L+   ++    ++I
Sbjct: 244 LAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 293


>gi|78060818|ref|YP_367393.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77965368|gb|ABB06749.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 317

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 122/290 (42%), Gaps = 13/290 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AAE+L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 32  LLVFEAAARHESYTRAAEELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 91

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 92  AELSGALGRIRGATLQ-AMSHQAGAGTLRLATLPTFGSKWLLPHLHDFYTAHPGVTVHLH 150

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH---YLKNCREPLSIQ 184
                +D   D  D AI +        L   +L    + A A P      +   +  +  
Sbjct: 151 SRIGGVDFLNDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIAPPDTGSASRRKADARTPA 209

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
              K  L+          E F+      R +        ++ S+  ++Q    G GI L+
Sbjct: 210 WAAKQTLLGVTSNQQAWAEWFSHYRLDHRQMRIG--PSFELTSH--LIQAVRAGMGIGLV 265

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P  +V+D      LV I  D IT   + Y  YP   +    L AFR ++ 
Sbjct: 266 PKVLVEDELSRNELVSI-GDAITSQRSYYLVYPPGNETLPSLVAFREWLL 314


>gi|260581106|ref|ZP_05848927.1| glycine cleavage system transcriptional activator [Haemophilus
           influenzae RdAW]
 gi|329124075|ref|ZP_08252622.1| glycine cleavage system transcriptional activator [Haemophilus
           aegyptius ATCC 11116]
 gi|260092235|gb|EEW76177.1| glycine cleavage system transcriptional activator [Haemophilus
           influenzae RdAW]
 gi|327467500|gb|EGF12998.1| glycine cleavage system transcriptional activator [Haemophilus
           aegyptius ATCC 11116]
          Length = 301

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +GI+LF R  R L LTE G 
Sbjct: 12  LNSLKSFESAARYLSFTKAADELCVTQAAVSHQIKLLEEFLGIELFKRKNRSLELTELGK 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L      L      P   L I+     G   L  +L EF  LYP I++
Sbjct: 72  AYFVDINKILRRLNEATERLLTLKTDPH--LNISVPQTFGIQWLVPHLSEFNQLYPQIEV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI         +L   +L   ++   A+P  L      +  +
Sbjct: 130 RLTGVDQDEGLLNKEIDLAIYYGLG-NWQNLQVDRLCEENLLILASPELLAEN-PIIQPE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH LI             N L   D  I +  +     +     +Q  + G GI L 
Sbjct: 188 DLKKHTLIHI-HTCDNWQAMANHLQLDDLNIQQGPL----FSHTFMALQAAIHGQGIVLA 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +     +N +L  ++   +    + Y        +  K++AFR +I 
Sbjct: 243 NRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQAFRQWII 292


>gi|167576744|ref|ZP_02369618.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 300

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 123/298 (41%), Gaps = 20/298 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA ++ ++Q ++++Q+  LE  +G++LF R  RGL LT  G 
Sbjct: 8   LNALRAFEVSARHLNFRAAAGEIGVTQGAVAQQVRHLEDTLGVRLFERLPRGLALTADGL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +PD+ I
Sbjct: 68  AYFADVRRALNLIGDATDRLAKRRS----SVTISTTPSFASRWLIPRLASFGDEHPDVDI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + +HA  +P  L         +
Sbjct: 124 RVIADSQFATFQGDGVDLAIRYGKPPFGKGLVARLLFPVDIHAVCSPALLAPSGARARAR 183

Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L    L+    DL P+ +      A VD   G       + N     +   + G G+AL
Sbjct: 184 DLAGQVLLHDAHDLWPEFLAALPERAAVDPAKGP------RFNQSSLAIDAAIAGHGVAL 237

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT---GKLKAFRNFIFLKAR 295
             D +V  +     L R+ +  +  S   Y  YP   +      K +A   ++  +AR
Sbjct: 238 ASDQLVARDIEAGRLRRLFDFALPLSIGYYIVYPNEPRRPDDIAKTEA---WLIREAR 292


>gi|116696405|ref|YP_841981.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530904|emb|CAJ97251.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 310

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 128/293 (43%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W    +F  V   G FT  AE   + +SS S  ++ LE ++GI+LF R  R + +TE
Sbjct: 3   TIEWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLEGQLGIRLFERTTRRVRVTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L+   + ++ +L     E    S + SG LRI+T  ++G   L  +L   L  +P 
Sbjct: 63  RGQRLYERVAPLFAELHEISAEATSDSAEVSGLLRISTPYEVGSQHLSESLTRVLRAHPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++Q+ +     D+     D A  +    +  +S   +++V +    YAAP  +K    P
Sbjct: 123 LRVQVDVSWDQPDLIRHGYDLAFVMTDTALHDTSFASKRVVLVERAFYAAPALIKTRGLP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + Q+L      T G+   +  E       + R   EPRI     ++    ++  + G G
Sbjct: 183 RTPQDLQGWP--TLGNADDRHWEFLRDGVEIARQDVEPRIC---THNAELRLKAALDGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  L    V+D      LVR++    +    VY   P        ++   + +
Sbjct: 238 VTRLSPRFVQDAVGQGQLVRVLPGYASSPLKVYVLMPARKLMPASVRVLLDML 290


>gi|115350477|ref|YP_772316.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115280465|gb|ABI85982.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 305

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AA++L ++  ++S+ I  LE  +G++LF R  RG+ LT  G 
Sbjct: 9   LNALRAFEAAARHLSVKSAAQELSVTPGAVSQMIRTLERHLGVQLFERVNRGILLTAAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++      +  ++   SG L ++ T       L   L +F    PDI +
Sbjct: 69  DYLPPVRNAFRQIADASQRVSGAAD--SGVLTVSVTPFFASAWLVPRLAQFRDACPDIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q++  +   D S D  D AIR     +   L   +L+T+ + A AAP  +     P +  
Sbjct: 127 QIVTSHALADFSRDGVDVAIRHGLG-RYIGLCSERLLTVEIVALAAPALVARLGMPATPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L         D   K    +     +D   G PR      +    ++Q  + G G  LL
Sbjct: 186 DLAGWP--HLHDAERKGWHIWFDAQRID-DFGPPRGPAF--DDSGLLLQAILAGQGAGLL 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P  +V+    +  LV++ +      F  Y  YP       K+ AFR +I 
Sbjct: 241 PAAMVRTELASGRLVQLADIAWLDDFAYYLVYPPHHAERTKVAAFRRWIL 290


>gi|288918537|ref|ZP_06412887.1| transcriptional regulator, LysR family [Frankia sp. EUN1f]
 gi|288350056|gb|EFC84283.1| transcriptional regulator, LysR family [Frankia sp. EUN1f]
          Length = 309

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 129/292 (44%), Gaps = 14/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F  VA  G+F+ AA QL++S S +SR ++ LE ++ I+L  R AR +TLT  G +  
Sbjct: 7   MRSFVRVADEGNFSRAARQLNISGSLVSRHVAELEKQLDIRLVNRTARAVTLTAAGRRYR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                V  +++     L+    +  G L +     +G   L   + +F + +P I ++  
Sbjct: 67  DFADRVLQEMDAEDAALRGLRERVEGPLAVICPKWIGNLDLGEAIADFAVDHPKIHVRFE 126

Query: 128 L---DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +    ++  +      D A   R  ++ S+++ RKL  I     AAP YL         Q
Sbjct: 127 VGGMSDRPFEFLDQGYDVAFHTRD-LRDSTMLIRKLADIEYVLCAAPEYLAARPPLKDPQ 185

Query: 185 ELDKHNL-ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +++  I   D I      ++          +   +    NSYL++ +  V G G+AL
Sbjct: 186 QLAENDCLIHLNDPI------WHLRGNGQEIHSKVPTAVYSSNSYLTLRKAAVRGRGLAL 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +P   V  +     L R + D   P+ ++Y  +        K++ F ++I  
Sbjct: 240 MPIRTVSADLASGLLERALPDYQGPARSLYAVHSPGAHTLRKVRVFLDYITA 291


>gi|301156497|emb|CBW15968.1| DNA-binding transcriptional dual regulator [Haemophilus
           parainfluenzae T3T1]
          Length = 297

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 127/291 (43%), Gaps = 16/291 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +G+ LF R  R L LTE G 
Sbjct: 8   LNSLKSFESAARHLSFTKAADELFVTQAAVSHQIKLLEDFLGVDLFIRKNRSLELTEFGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 ++V  KL      L     +P   L I+     G   L  +L +F   +P+I++
Sbjct: 68  AYFVDINKVLRKLNEATERLLTLKAEPH--LAISVPQTFGIQWLVPHLSDFNKQHPEIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           +L   ++D  +     D AI   K     +L   +L   ++   AAP  L+    P+   
Sbjct: 126 RLKGVDQDEGLLNKEIDIAIYYGKG-DWENLQVDRLGEENLVILAAPSLLEK--TPVRCP 182

Query: 184 QELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +L KH LI T      + M D+  L  ++   G         +     +Q  V G GIA
Sbjct: 183 DDLKKHTLIHTHTRDNWQAMADYLKLDDLNIQQGP------LFSHTFMALQAAVHGQGIA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L    + +   +N +L  ++   +    + Y        +  +++AFR +I
Sbjct: 237 LANRILAQQEIENGHLQIVLPTELRDPKSFYVVNHLDRLDDEQIQAFRTWI 287


>gi|312883487|ref|ZP_07743212.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368710|gb|EFP96237.1| LysR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 308

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 129/299 (43%), Gaps = 11/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L  F  VA+  SF+ AA+ L +S+  +SR I  LE E+   LFYR+ R ++LTE 
Sbjct: 1   MNLTHLDTFLSVAKMNSFSSAADHLGVSKGLVSRHIKALEVELSCTLFYRNTRNVSLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L  +  E+       + ++ +   +  G +R    I LG NL +  + +F   YP++
Sbjct: 61  GKELFLIAKEIEVLRLGAEKKIHDLLQEDQGVIRFTAPISLGPNLCRAVIPKFRARYPNL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +       D+     D A+R    +   +L+ +    +     ++P +    R   +
Sbjct: 121 NLDIDFSTLIKDVEFGSMDIALRAYSELGD-NLVAKDFGWMKNLVVSSPEFQSKHR-IKA 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     I  G+LI    + +   +  +  +  P    L  +SY  I+Q+ +LG G+A
Sbjct: 179 PSDLVGLECI--GNLINSDWDQWPLFSANNEKVVVPSGGKLACSSYDGILQFALLGEGVA 236

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            LP  I +    +  LV ++    +     +  Y        KL+ F   +     DWK
Sbjct: 237 NLPMPIAEKYLASGELVEVLPGWYSLIHYFHLVYAYQRNYPKKLRDFIGALV----DWK 291


>gi|28867404|ref|NP_790023.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28850638|gb|AAO53718.1| transcriptional regulator, LysR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331017673|gb|EGH97729.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 316

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LR F V AR  SFT AA +L   Q ++S+QI  LE ++  +LF R  RG+ LTE
Sbjct: 7   DMSLDLLRAFEVAARLRSFTAAAIELGTIQPAVSQQIKRLEEQLATRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L          +++  I + E        L++AT        L   L  F  L PD
Sbjct: 67  AGEILFSHVQAGLQSIDSGLIAITEQQQHE--VLQVATDFAFAAYWLMPRLHRFHKLNPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D  +             R L +  +    +P  + + + PL
Sbjct: 125 VDVSLVTSERTHSMLRADIDVTVLFGDGRFKQG-ESRWLFSEEVFPVCSPLLIADRQTPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L    L+           D++ +         P    L+ ++Y  ++Q  + G GI
Sbjct: 184 PNDALRDFPLLHLRGDSINNWFDWSGVFRALDIPQAPAPGQLRFDNYTLLIQAAIGGQGI 243

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V    D   L R +          Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWKHLVDDLLDQGLLCRPIAGAAISGHGYYVVLPQRKRRVQIVQQFMDWLASE 298


>gi|134295503|ref|YP_001119238.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134138660|gb|ABO54403.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 311

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 118/276 (42%), Gaps = 7/276 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L +S++++S++I+ LE   G+ L  R  R + LT+ G  L   T + +  +      +
Sbjct: 30  QRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTDAGQTLVDSTRDAFESIGQHFARV 89

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E + +P G LR+   + LG+  +  +L +FL  +P +QI+L L ++   ++ +  D AI
Sbjct: 90  KELAGEPRGLLRVTAPVALGRQQVVPHLPDFLRQHPGVQIELDLSDRLHSLTQEGFDLAI 149

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R       +  +  KL        A+  YL     P    EL  H+ + +          
Sbjct: 150 RHTTTAPQTH-VAWKLCDTRSLLVASRDYLDARGAPRHPSELVDHSCLCYLRDNEPAAWS 208

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F       + +  P       N+  ++ +  + G GIALLPD+  + +     LV +++ 
Sbjct: 209 FEPHGRRRQRVSVPVRGSFAANNSEAMREAALGGLGIALLPDFSAQRDLDAGRLVALLDG 268

Query: 262 VITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
                     ++   P +      ++A    +  + 
Sbjct: 269 WRPSGAFGDHIFAIRPYSAVVPSAVRALVRHLRERL 304


>gi|118590353|ref|ZP_01547755.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
 gi|118436816|gb|EAV43455.1| transcriptional regulator, LysR family protein [Stappia aggregata
           IAM 12614]
          Length = 307

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 124/296 (41%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F   AR  SFT AAE+LHL+Q ++S+Q+  LE  +G++LF R  + + LT+ G  
Sbjct: 10  DTLIAFECAARHLSFTRAAEELHLTQGAVSKQVRQLEDRLGVELFRRVRQRIVLTDAGRI 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     ++     ++   +      L +A     G   L   + +F   YPD  + 
Sbjct: 70  YLHDIRGALEQMTAATRQVMSYAGSAD-VLNLAVLPTFGTRWLAPRIADFGRRYPDAGLN 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +  +  D   +  D AI    P+ + + I   L    +   A+  +     E  +  +
Sbjct: 129 LSVRLQPFDFDEEPFDGAIHHGDPVWAGA-IAEHLFDEEVVPVASRVFRDRH-EIRTPAD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +   +          + F+ LA V+           +   ++ I +  +  +G AL+P
Sbjct: 187 LARVPRLQLATRPLAWRQWFD-LAGVETDAA---FQGARFEQFVMISEAAIHHAGAALIP 242

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + V+    +  LVR+ +  ++     YF YPE       + AFR ++  +AR  +
Sbjct: 243 RFFVEAELASGRLVRLFDLSLSQQTAYYFVYPEGRTMRPVVSAFRKWLMEEARSAR 298


>gi|296132061|ref|YP_003639308.1| transcriptional regulator, LysR family [Thermincola sp. JR]
 gi|296030639|gb|ADG81407.1| transcriptional regulator, LysR family [Thermincola potens JR]
          Length = 298

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 8/294 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L +F  VA   SF+ A+E LH+SQ +IS+QI+ LE  +G+KL  R  R +TLTE+
Sbjct: 1   MNRQHLELFKTVAEKKSFSKASEALHISQPAISQQINALEEYLGVKLLNRTTRKVTLTEE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++   ++    +  +  L E +    G L I  ++ +G+ LL   +  F + YP +
Sbjct: 61  GKILYQYAIQICKLFDDAERALSEFTGVVKGTLTIGASLTIGEYLLPNIIGAFKVEYPQV 120

Query: 123 QIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           QI L + N       +     D  + +  P+ +  L    ++   +    +  +    R 
Sbjct: 121 QIILDVFNTKHIVRRLLEQNIDVGL-VEGPVNNDDLSVEPIMEDELCVIVSQKHSLAGRN 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +S++EL     +   +      E             +  +  L++ S  ++        
Sbjct: 180 SVSLEELACFPFV-LREKGSGTREVMEEALRNAGWDPKEMLINLELGSTEAVKAAVEANL 238

Query: 240 GIALLPDYIVKDNPNL--VRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI++L    V+    L  ++++  D +      Y  Y      T  ++ F NFI
Sbjct: 239 GISILSKRTVQKELQLNSLKLLAIDGLKIIRKFYVVYNPKRHRTPAVEHFLNFI 292


>gi|238760032|ref|ZP_04621183.1| Transcriptional regulator [Yersinia aldovae ATCC 35236]
 gi|238701719|gb|EEP94285.1| Transcriptional regulator [Yersinia aldovae ATCC 35236]
          Length = 303

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 133/299 (44%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++L+ F  V   GS T AAEQ   + S ISR +S LE ++   L  R  R L LT
Sbjct: 1   MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G        ++   ++  + ++    +KP+G+LR+       Q+++   +  F  LYP
Sbjct: 61  EEGELFLSHARQILGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMISGFRALYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++L  D+ +ID+     D AIR+   ++ S++  R L    +   A+P YL     P
Sbjct: 121 QIILELNTDDLNIDLLEQRTDIAIRIG-TLRDSTIHARLLGASRVRILASPDYLHRHGTP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+I +L  H+L+ F             L      I    I  L  +S  ++    + G G
Sbjct: 180 LTIDQLADHSLLGFTQPESLNQWSLPHLPAGRSAI----IPNLAASSGETLRLLALQGEG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  L D++ +++     LV +M      ++  +   Y    +   ++  F ++   + +
Sbjct: 236 IVELSDFMTREDQLAGRLVEVMASQTLETWQPINAVYYRNTQLAARITCFLDYASEQIK 294


>gi|224457902|ref|ZP_03666375.1| transcription regulator [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371324|ref|ZP_04987326.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875568|ref|ZP_05248278.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|151569564|gb|EDN35218.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254841567|gb|EET20003.1| transcriptional regulator [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159944|gb|ADA79335.1| transcription regulator [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 298

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +        FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT 
Sbjct: 6   NISISLFEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTH 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      + ++++  +   +    +PSG L+I+T+    QN+L   +KE+   +  
Sbjct: 66  EGMLLFNYCKTLQNEIDNIRDLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ ++ K  +   + AD  + +       +++ RK+ +      A+P Y+     P 
Sbjct: 126 VKIEVSIEEKMPNFKSNEADIILGVNW-TPPENIVARKIASTRYVLCASPAYINKNGSPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L  HN I     +   +         ++   +   S +  N+   I    +   GI
Sbjct: 185 NISDLANHNYIPHKSRVTPLVN-----IKKNKLNPQTLPSNISANNIEFIKACVLNDFGI 239

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A   +YIVK+      L+ +++D       +Y  YP+      K+K F N + 
Sbjct: 240 AQFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLVI 292


>gi|56708693|ref|YP_170589.1| transcription regulator [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110671165|ref|YP_667722.1| transcription regulator [Francisella tularensis subsp. tularensis
           FSC198]
 gi|56605185|emb|CAG46317.1| transcription regulator [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321498|emb|CAL09700.1| transcription regulator [Francisella tularensis subsp. tularensis
           FSC198]
          Length = 300

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +        FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT 
Sbjct: 8   NISISLFEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTH 67

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      + ++++  +   +    +PSG L+I+T+    QN+L   +KE+   +  
Sbjct: 68  EGMLLFNYCKTLQNEIDNIRDLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSK 127

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ ++ K  +   + AD  + +       +++ RK+ +      A+P Y+     P 
Sbjct: 128 VKIEVSIEEKMPNFKSNEADIILGVNW-TPPENIVARKIASTRYVLCASPAYINKNGSPS 186

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L  HN I     +   +         ++   +   S +  N+   I    +   GI
Sbjct: 187 NISDLANHNYIPHKSRVTPLVN-----IKKNKLNPQTLPSNISANNIEFIKACVLNDFGI 241

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A   +YIVK+      L+ +++D       +Y  YP+      K+K F N + 
Sbjct: 242 AQFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLVI 294


>gi|312960758|ref|ZP_07775263.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311284416|gb|EFQ62992.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 319

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 128/290 (44%), Gaps = 9/290 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V  R  +FT AA++LH++QS++S Q+  LE   G++LF R  R L LT  G+ L 
Sbjct: 28  LRAFEVATRHPTFTAAAQELHVTQSAVSHQLRHLEALWGLQLFER-GRALRLTAAGATLA 86

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  E +  LE T  +L+E   +   +L ++TT       L   L      +P++ + L 
Sbjct: 87  PIVREFFMSLEATLGDLREQKGRV--RLSVSTTYSFALKWLLPRLPSLSRQHPELLVSLD 144

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  I  S   AD AIRL K      L    L    +   A+P  L+    P S  EL 
Sbjct: 145 TTDAVIHFSDAQADVAIRLGKG-NYPGLYSEFLFGEQVFPVASPELLQRVGTPGSPTELL 203

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+   D      +   W   V      P    ++       ++  +LG G+AL+   
Sbjct: 204 RLPLLI-RDGAELAPKWEVWFEAVGLAFS-PLRESVRFGDTNMTVEAALLGQGVALVRSG 261

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            V++   +  LVR+ +         YF  P+ +++   +  FR ++  +A
Sbjct: 262 HVENEISDGRLVRLFDVQFQSPLAYYFVCPKGIESQPHIARFRRWLVGEA 311


>gi|145627825|ref|ZP_01783626.1| glycine cleavage system transcriptional activator [Haemophilus
           influenzae 22.1-21]
 gi|144979600|gb|EDJ89259.1| glycine cleavage system transcriptional activator [Haemophilus
           influenzae 22.1-21]
          Length = 297

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +GI+LF R  R L LTE G 
Sbjct: 8   LNSLKSFESAARYLSFTKAADELCVTQAAVSHQIKLLEEFLGIELFKRKNRSLELTELGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L      L      P   L I+     G   L  +L EF  LYP I++
Sbjct: 68  AYFVDINKILRRLNEATERLLTLKTDPH--LNISVPQTFGIQWLVPHLSEFNQLYPQIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI         +L   +L   ++   A+P  L      +  +
Sbjct: 126 RLTGVDQDEGLLNKEIDLAIYYGLG-NWQNLQVDRLCEENLLILASPELLAEN-PIIQPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH LI             N L   D  I +  +     +     +Q  + G GI L 
Sbjct: 184 DLKKHTLIHI-HTCDNWQAMANHLQLDDLNIQQGPL----FSHTFMALQAAIHGQGIVLA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +     +N +L  ++   +    + Y        +  K++AFR +I 
Sbjct: 239 NRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQAFRQWII 288


>gi|332993693|gb|AEF03748.1| DNA-binding transcriptional activator GcvA [Alteromonas sp. SN2]
          Length = 297

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 120/290 (41%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNALKAFEAAARHLSFTKAADELFVTQAAVSHQIKALEEFLSMKLFIRRNRTLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L+     L        G + +A         L   + +F +  PDI +
Sbjct: 68  AYFLELKDIFKNLQEATERLLARGS--KGAITVAMPPSFASQWLVPRISQFSVAQPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   K  + S L   KL    +    +P      +   S+ 
Sbjct: 126 RIKAVDFDEGFLDDDVDVAIYYGKG-RWSGLQADKLHREFLTPLCSPMLFNGPKPLSSLA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   DL     +  NWL  V           +  +  + ++Q   LG GIAL 
Sbjct: 185 DLRHHVLLH--DLSRAAWK--NWLKHVGVSGVNVNQGPV-FSHSMLVLQAAALGQGIALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + +   D   L+   E+ +      Y    E+    GK+ AFR +I 
Sbjct: 240 NTVLARPELDAGRLIMPFEEKVESRDAFYLVCEESQAELGKIAAFREWIL 289


>gi|120598066|ref|YP_962640.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146293863|ref|YP_001184287.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120558159|gb|ABM24086.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
 gi|145565553|gb|ABP76488.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
          Length = 299

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 130/300 (43%), Gaps = 20/300 (6%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L +F  +  +GSF+ AA++L +  +++SR+++ LE ++  +LF R  R L LTE+G
Sbjct: 8   ELQLLYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +    V  + +       +   KP G LRIA  I +   +    L EF  LYPDI+
Sbjct: 68  LALFQRYQSVIAQFDELSGVGSD---KPEGTLRIAAPISIISIIFIRALNEFGRLYPDIR 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   N+ +D+     D AI +      SS +   L  +    +A P YL    +    
Sbjct: 125 LHISQSNELVDLIDKGIDVAI-VGGAQPDSSWVSSTLGELDYCLFATPEYLAQAPKLTHP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP----RISCLQVNSYLSIMQYCVLGS 239
            +L+ H LI       K    FNW   +  P GE       + L +      ++  +   
Sbjct: 184 NDLEAHQLI-------KVWPLFNW--HLKHPNGESFYFNGPTKLTLTDLHGAIESALDHG 234

Query: 240 GIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           GI   P+  VK       L  ++ + +     +   Y +  +   K++ F  F+  KA +
Sbjct: 235 GILYGPELFVKQQIKEDRLKVLLPEWVGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPE 294


>gi|238793648|ref|ZP_04637271.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238727063|gb|EEQ18594.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 300

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 13/301 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L     VA++G F  AA  +  + S +S  +  +E ++G++LF+R  R + LT
Sbjct: 1   MKIDIALLHAVVAVAKAGGFREAARMIGSNPSYLSDAVRRVEQQLGVRLFHRTTRTVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L         +++     +      PSG LR+   +   + +L   +  FL  YP
Sbjct: 61  EVGRALMERLMPAMSEVDAALDIVNRFRDTPSGTLRLNVPVSAARLVLPTIVPAFLKRYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV--TIHMHAYAAPHYLKNCR 178
           DIQ+ ++ ++   D+  D  D  IR  + ++   +I   +          AAP YL    
Sbjct: 121 DIQLDVVAESNVQDVFRDGCDAGIRYDECLEQD-VIALPIGKRQQRFAVAAAPEYLDLHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY---- 234
            P    EL +H  I          E   W    D  +   + +   + S  + +      
Sbjct: 180 RPEHPSELLQHRCIRGRYASGIVPE---WEFERDGEVVRVKPNGPLMVSIGAAVDLAVAT 236

Query: 235 CVLGSGIALLP-DYI--VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            + G GI  L  +++    +   L  I+          Y  YP+       LKAF +FI 
Sbjct: 237 AIAGGGIIYLFEEWLRPAIERGELEAILTPWWQQFSGPYLYYPDRRLIPSPLKAFIDFIR 296

Query: 292 L 292
            
Sbjct: 297 E 297


>gi|124383518|ref|YP_001027364.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126448703|ref|YP_001082329.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|124291538|gb|ABN00807.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126241573|gb|ABO04666.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
          Length = 330

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 134/296 (45%), Gaps = 9/296 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ + AA++L +S++++S +++ LE  +G++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVDILDAGNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRTTRRIEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +  +L   +  +        G++R++     GQ ++   L  F  LYP I
Sbjct: 61  GLRLYEHGRRIQSELFAAREAVTTLGQDLQGRVRLSVPSGYGQLVMSNWLIAFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P  
Sbjct: 121 VLDVVFENRIEDLMRDEVDIAVRVMSE-PPQNLVARDMGAVRYVACASPGFAATHGMPTE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + +L    +IT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LGQLFDAPVIT-STVVGRQLRVAAYLGDERHEVLLE--PTLISENFLFLRQAILAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLK 293
           ++PDY+V D+     +V  ++      F   +Y  Y     +T     F +F+  +
Sbjct: 237 IVPDYVVHDDVRRGAVVTTLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIDFMLEE 292


>gi|319761002|ref|YP_004124939.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|317115563|gb|ADU98051.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
          Length = 292

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 127/293 (43%), Gaps = 12/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF VVAR+G+ T AA +L++SQS++SRQ++ LE  +G++LF R   G+ LTE G 
Sbjct: 6   LNPLKVFEVVARTGNLTLAASELNVSQSAVSRQVAVLEEYLGVQLFTRERVGVRLTEVGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R     + ++      +          +R+ T   L    L   L  F   +P++++
Sbjct: 66  GYARRIGPAFGEIAAATEAITRKYSNN--VIRLRTYTTLTARWLIPRLPHFKARHPEVEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++     +D   +  D AI L             L+   +    AP ++     P   +
Sbjct: 124 SILNSTAPLDFGAEQCDLAIVLGDG-HWPGAEATLLLEDIVEPVCAPGFIAE-GAP--PE 179

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L    L+       +  +   WLA    P        +  +S +   Q  V G GIA+ 
Sbjct: 180 ALRGKRLLV---SKYRKDDWPRWLAHAGLPELFETAETMVFSSSILTWQAAVDGLGIAIG 236

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             ++++ +     LVR +   +      Y   P   + +GK+ AF++++ ++A
Sbjct: 237 QQHMLEADFQAGRLVRPLARPLRTGKGHYLVTPALQRYSGKIAAFKDWLMVEA 289


>gi|330878919|gb|EGH13068.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 269

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 119/266 (44%), Gaps = 7/266 (2%)

Query: 23  AAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQI 82
           AA +L +S + +S+++  LE  + + L +R  R +++TE G +++     +   ++    
Sbjct: 3   AANELGMSAAYVSKRVKLLEQNMSVVLLHRSTRQVSITEDGERVYEWAKGILESVQQMGD 62

Query: 83  ELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADC 142
           E+     +PSG LR+ ++   G+  +   L E   LYP + I+L + ++ +D+  +  D 
Sbjct: 63  EVAALHGEPSGLLRVVSSQGFGRRFVAPALSELAALYPKLDIRLDIQDRLVDLIEEGVDL 122

Query: 143 AIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCM 202
            IR+   I +  L  R L +      A+P YLK+   PLSI EL  H+ +   +      
Sbjct: 123 DIRVGNEI-APHLRARHLASNWRVLCASPAYLKDHGVPLSIGELANHDCLVIKERDRPFG 181

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIM 259
                L              L  N      Q+C+ G G+ L   + V+       LV+++
Sbjct: 182 IWH--LNGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVLLRSLWDVRTDLAEGRLVQML 239

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKA 285
            +    +  ++  +   L ++ K++ 
Sbjct: 240 PEYRQDA-DIWAVHTSPLMSSAKVRV 264


>gi|161522358|ref|YP_001585287.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189347997|ref|YP_001941193.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345911|gb|ABX18995.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189338135|dbj|BAG47203.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 301

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 116/292 (39%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   AR GSFT AA++  ++  +ISR +  LET +G  LF R    + LT+ G 
Sbjct: 8   LNSLCAFEAAARLGSFTLAADERCVTHGAISRHVQQLETWLGKPLFERLNLRVVLTDAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++       Q+        LR+          L   L  F + +P I++
Sbjct: 68  AYLAEVGASFDRI--ALATAQQFGQAQQRVLRVNAPATFSLRWLVPKLSSFQVAHPTIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ ID   D AD  IR   P      +  + ++       AP  L+      +  
Sbjct: 126 RLSTSNEPIDKLRDSADLIIR-GGPQTIDGYVADEFLSEVRLPVCAPKLLERT-PLRTPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WLA    P   PR   L +  +   +Q  + G G+A+ 
Sbjct: 184 DLANFTLLHAATYPGMWPE---WLAAAGCPNLVPR-HALTLEHFYLTLQGALDGLGVAMG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +V D+     LV+       P++  +   P    +   ++AFR+++ L 
Sbjct: 240 PIALVADDIAEGRLVQPFSGPALPAWRYFIYVPATRIDDEAVRAFRDWLKLA 291


>gi|260550620|ref|ZP_05824829.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406331|gb|EEW99814.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 296

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 130/296 (43%), Gaps = 10/296 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  D +  F  V   G+F+ AA  L +S+  +++++  LE ++   L  R  R + LT 
Sbjct: 1   MDRLDCISTFVSVVEHGNFSSAARALDISRDLVAKRVCYLENDLRTTLLTRTTRQMNLTS 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G K ++ +  +  + E    E+  +   P G+L++ T +      LQ  + +F+  YP 
Sbjct: 61  CGEKFYQHSKVILSEFEWAAYEISYNQQYPEGELKLNTPMSFSNIFLQHIISDFIEKYPS 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREP 180
           I+I L + ++ +D + +  D  IR+       +L   K++ T   + YA P Y      P
Sbjct: 121 IKIDLFMTDQLLDTNNNKFDLTIRVDG--SPPNLANSKILNTYQRYLYATPEYFNQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S++EL +H  + +          F       + +       +  N+   ++  C+   G
Sbjct: 179 GSLEELKEHKFLIYYQDSRHKKLIFQ---KDHKEVSFNCFPVMTCNNGELLLDMCLKNHG 235

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           I  LP++I +       L + +ED  +    +Y  +P     + K+K F +F+  +
Sbjct: 236 IVFLPEFIAEPYYKEGKLQKCLEDYTSQPLHLYVTWPNRKILSKKVKLFIDFLTRQ 291


>gi|153009913|ref|YP_001371128.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561801|gb|ABS15299.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 291

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 124/295 (42%), Gaps = 12/295 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               + LR F   AR  SFT AA +L ++Q+++S Q+  LET + + LF R  RGL LT 
Sbjct: 5   HLPLNSLRAFEASARHLSFTKAAIELCVTQAAVSHQVKSLETRLNVTLFERLPRGLMLTS 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L     + + ++  T    +    +    LR+     L    L   L++F   YP 
Sbjct: 65  EGETLLPTLKDAFDRIAGTLERFEAGHYREI--LRVGAVGTLAVGWLLPRLRDFQNRYPF 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L  +N  +DI+ +  D AIR         +   +L+   +     P      RE  
Sbjct: 123 IDLRLSTNNNRVDIAAEGLDYAIRFGSGAWH-GIDATRLLEAPLSPLCIPEL---ARELR 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H L+       +  E   W          P    +  +S L++M+  + G+GI
Sbjct: 179 TPADLARHTLL----RSYRADEWTQWFQAAGVTGDMPLPRSIMFDSSLAMMEAAMQGAGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL P  +         I++   T     + +    ++   T  + AFR+++   A
Sbjct: 235 ALAPPLMFSRQLLSETIVQPFETTVTMGSYWLTRLQSRTETQAMAAFRDWLTDAA 289


>gi|33596013|ref|NP_883656.1| lysR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33573016|emb|CAE36656.1| putative lysR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 301

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 124/294 (42%), Gaps = 7/294 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++ +F  VA + SF  A  +L LS S+++R ++ LE  +GI L  R  R + LT+ G 
Sbjct: 4   FQEVSLFLAVAEARSFAAAGRRLGLSASTVTRAVAALEARLGILLLVRTTRHVRLTDAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       V   L   +       V+P G+L +      G+  +   + ++L  +  +++
Sbjct: 64  QFAHDCRAVLDSLAQAEEAAAGGRVQPRGELSVTAPALFGELHVMPAIVDYLRQHRRVRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++ + +  +  D A+R+ + +  SSL    +  +     AAP +L     P    
Sbjct: 124 RALLVDRVVRLLDEGVDVAVRIGR-LPDSSLTAIHVGDVRRIVCAAPDFLARAGVPSHPG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L ++  +    ++ +   D                + L V S  + ++  V G G+A +
Sbjct: 183 MLPRYCTV---SVVMEGQMDRWRFVCDGHARDLDVQAQLTVTSSQAAVRAAVQGWGLAQV 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y          L  ++ +   P   V+  YPE  K   K+++F  F   + R
Sbjct: 240 VSYQAAGALREGALQVVLREFEPPPLPVHVVYPEGRKGAAKVRSFVEFCVERLR 293


>gi|294651050|ref|ZP_06728389.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823063|gb|EFF81927.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 262

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 111/238 (46%), Gaps = 5/238 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA   SFT AA+   L+ +++SR I+ LE  +  +LF R  R + LT  G 
Sbjct: 10  LSSVELFCAVAEYKSFTQAAKIAGLTPAAVSRSIARLEQRLNTQLFVRSTRQVRLTHAGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   +   ++   +  L+  S + +G++RI+     G   +   +  F   YP+IQI
Sbjct: 70  IYFQQCQQGLTQIIEAEQLLRNQSQQLNGRIRISLPTPYGHYRVLPLIPIFKQKYPNIQI 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L NK++D   +  D AIR  +  + S+LI R L    +   AA  Y+ +   P  I 
Sbjct: 130 DLQLTNKNVDFIAEGFDLAIR-GRYFKDSNLIVRTLEHAELVVVAAASYIDSYTIPTDIA 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE--PRISCLQVNSYLSIMQYCVLGSG 240
            LD+H  + F  ++P   +   WL  V+  I E   + S   ++  L  +     G+G
Sbjct: 189 ALDQHECLQF--ILPSTGKSVPWLFKVNNQIHEYTTKGSLHCLDDILGTVTLAKHGAG 244


>gi|330897857|gb|EGH29276.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 319

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 117/292 (40%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G++L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECLGFAPASRKLGIPKSKLSRRIAGLEERLGVRLIHRSTRTFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +  S  +P G++ I+    L        +  F   +P +
Sbjct: 62  GRDYYAHCVAMLVEAEAAEEAILRSKSEPQGRVVISCPPALAAMGFNETIARFAAEHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+   N+ +D   +  D A+R+R  P++   L+ +KL        A            
Sbjct: 122 QIQVESTNRRVDPLTENIDIALRVRFPPLEDDGLVVKKLGHSAQRLVARADLAARLSATS 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S+  L     +     +P    +  WL      +         L  +    ++Q  + G 
Sbjct: 182 SLDALSTLPSL----DMPSSNHEHRWLLETQPGQYAEIRHTPRLISSDLDMMLQAALQGV 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A LP+ IV++   +  L+ +  +       V+  +         ++   +
Sbjct: 238 GVAQLPELIVREALQHGRLIELFSEHRPKCGIVHAVFASRRGLLPAVRGLLD 289


>gi|260582123|ref|ZP_05849917.1| glycine cleavage system transcriptional activator [Haemophilus
           influenzae NT127]
 gi|260094755|gb|EEW78649.1| glycine cleavage system transcriptional activator [Haemophilus
           influenzae NT127]
          Length = 301

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +GI+LF R  R L LTE G 
Sbjct: 12  LNSLKSFESAARYLSFTKAADELCVTQAAVSHQIKLLEEFLGIELFKRKNRSLELTELGK 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L      L      P   L I+     G   L  +L EF  LYP I++
Sbjct: 72  AYFVDINKILRRLNEATERLLMLKADPH--LNISVPQTFGIQWLVPHLSEFNQLYPQIEV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI         +L   +L   ++   A+P  L      +  +
Sbjct: 130 RLTGVDQDEGLLNKEIDLAIYYGLG-NWQNLQVDRLCEENLLILASPELLAEN-PIIQPE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH LI             N L   D  I +  +     +     +Q  + G GI L 
Sbjct: 188 DLKKHTLIHI-HTCDNWQAMANHLQLDDLNIQQGPL----FSHTFMALQAAIHGQGIVLA 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +     +N +L  ++   +    + Y        +  K++AFR +I 
Sbjct: 243 NRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQAFRQWII 292


>gi|170697288|ref|ZP_02888382.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137908|gb|EDT06142.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 308

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 120/296 (40%), Gaps = 14/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+   +  S S   AA  L L+  +++ ++  +E  + ++L  R  +G+ LT++
Sbjct: 2   LDLEDLRLVRAIGASRSLASAARLLDLTPPAVTIRLQRMEARLDVRLAVRQPKGIALTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++   E+  ++E   + +        G LR+      G+  +   +++    +P +
Sbjct: 62  GQRLYQEAVEILERVEALPVNISGDHGDVQGTLRVVAPFGFGRKYVARIVRDVQRAHPKL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L L    +  S   AD  + +   ++SSS I   L        A+P Y +   E   
Sbjct: 122 EISLHLSESPLG-SASGADVVVHVG-TLKSSSWIGYPLAPNERFLCASPGYARRIGELNH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-------CLQVNSYLSIMQYC 235
             +L +++ +   +            +  D   GEPR S        L  N    I  + 
Sbjct: 180 PSDLARYDCLCLRENDEDVPRWH--FSHPDDNKGEPRRSAVIRVTGALSSNDGTVITDWA 237

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + G GI    ++ V     +  LVR++ D   P   V    P     + + + F +
Sbjct: 238 LAGLGIVERSEWDVAPLLASGKLVRLLPDWHLPPAPVTALLPSRTGRSARQRVFLD 293


>gi|91782009|ref|YP_557215.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91685963|gb|ABE29163.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 329

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 121/293 (41%), Gaps = 7/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+   + +R++  V   G+ + AA  L + Q + S +I  LE  +G +L  R AR L  T
Sbjct: 1   MNL-LEAMRIYVRVVERGNISSAARDLDIGQPAASERIDRLEKYLGCRLLLRSARALNCT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G   +  +  + + +E    E+        G +RIA     G+ ++   L      YP
Sbjct: 60  PDGVTFYERSRRILNAVEQAVAEVSNEEQALRGTVRIAAPHCFGETVVPRALTLVRAAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++LIL+++ +D++ +  D + RL + +   + I  +L  +     AAP YL      
Sbjct: 120 QLDLELILNDRTVDLATEGVDASFRLGQ-LGEGAFIACQLGQVGRVLVAAPEYLSRHGPV 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +  +L KH  I    +          +  V      P  + ++ + +  + +  V G+G
Sbjct: 179 AAPPDLVKHPFIRLQGMFGTDQLPLRRMENVVESA--PVHTVVKTSHWRPMYEMIVSGAG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           I ++ +    D   +  LVRI+       F ++           +++     +
Sbjct: 237 IGVVEEPACVDALTDGRLVRILPRFDALPFDLHVLTQAQRPVPARVRMVVTML 289


>gi|76812247|ref|YP_333069.1| gp58 [Burkholderia pseudomallei 1710b]
 gi|76581700|gb|ABA51175.1| gp58 [Burkholderia pseudomallei 1710b]
          Length = 384

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 120/290 (41%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   AR G+FT AAE+L+++Q ++S+Q+  LET +G  LF R A+ L LT  G 
Sbjct: 96  LQCLVFFDAAARHGNFTRAAEELNVTQGAVSKQVVKLETFLGTTLFVRDAKALHLTRAGQ 155

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +          + +        L IA         L   + EF   +P++ +
Sbjct: 156 QYADRVHAILADCVEATALVMKEQTPH--SLTIACASGTATLFLADRIAEFSAEHPEVSV 213

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++     +++    D  +   + +    +    ++   +HAY AP +L   R P   Q
Sbjct: 214 RILVREGVFNLNAAEFDIGVYYIRDVPPPGIAGTAIIAEDVHAYCAPTFLAGRRVP--PQ 271

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +  L+   +   + M   +W       IG      +  NSY  ++Q  + G G  L 
Sbjct: 272 DLMEATLLVAEEQQRQWMGWRDWFRLTVGEIGFRPARTISANSYPVLLQLALHGHGAILG 331

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +++    ++  LV   +   +        +P   ++T  +  FR ++ 
Sbjct: 332 WKHMITPLVESGKLVLASDAHASFGGAYQVIWPADRRDTPAVTMFREWLL 381


>gi|313500574|gb|ADR61940.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 316

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 127/290 (43%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-ARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 10  ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +    
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQGYLDSHTPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L KH  I++ D +    E       +           L+  S ++     + G G
Sbjct: 189 RQVTDLAKHPFISYVDDLAFSSELLYLANLIPNASAH-----LRSTSVIAQYTAALQGRG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +P LV ++ + I  +   +    E L+   ++    ++I
Sbjct: 244 LAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 293


>gi|95930890|ref|ZP_01313620.1| transcriptional regulator, LysR family [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133016|gb|EAT14685.1| transcriptional regulator, LysR family [Desulfuromonas acetoxidans
           DSM 684]
          Length = 293

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 9/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D  +++ F  VA   +FT AAE L L+Q ++S  I+ LE  + + LF R  R +TLT +
Sbjct: 1   MDLRQIKTFLAVAEHLNFTRAAESLRLAQPAVSISIAKLEEALELTLFNRQGRHITLTAE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +   L   + E+ E      G++RI     L        + +F   YP++
Sbjct: 61  GEVFLRHARRIIDDLSDAEREMTELKGLVRGEVRIGIPPMLSSYYFPRVISDFRAAYPNL 120

Query: 123 QIQLI---LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + ++          I     D  +     I    L  R  +   + A     +   CR+
Sbjct: 121 NLSVMGQGAGEIQQLIRSGDVDLGVIAGSNIPD-GLEARCFLREEIVACVPVEHPFACRD 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +++ EL +  LI F     +      W+ ++ R + +      + N +  +      G 
Sbjct: 180 SITLDELWREPLILFK----QGFYLREWIDSLHRDLPQIPNVVFETNLFSLVRSLIREGV 235

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           G++ L   +V D P  V  +      S  ++  +      +   +AFR+F+  +   ++
Sbjct: 236 GVSTLLRMVVADEPQ-VAAVPFAPPLSLDLHIAWKSDGYLSQANQAFRDFLLERIESYR 293


>gi|300693888|ref|YP_003749861.1| glycine cleavage system transcriptional activator (gcva) [Ralstonia
           solanacearum PSI07]
 gi|299075925|emb|CBJ35234.1| putative glycine cleavage system transcriptional activator (gcvA)
           [Ralstonia solanacearum PSI07]
          Length = 313

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 124/298 (41%), Gaps = 12/298 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L++F   AR  SF+ AAE L ++ S++S QI  LE E+G+ LF R  R +TLT+ G
Sbjct: 8   NLGALKMFEAAARLESFSRAAEALCVTHSAVSHQIRALEAELGMALFKRDGRRITLTDPG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +            E         +     +L I+         L   +  F+  YP+I 
Sbjct: 68  RRYAERIR--SALFEIAAATESMRTGDRERRLVISLLPSFAARWLTPRVGRFIERYPEID 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L   +   D + D  D  +RL        L    L+        AP  L   R P + 
Sbjct: 126 VELQSTHVITDFNRDDVDVVLRLGDG-DYPGLFVEPLLDEVFFPACAPT-LNGGRLPKTP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L K  L+     + +      ++A       EPR   L  ++   +MQ  + G G+ L
Sbjct: 184 ADLAKVTLLRSDYEMWRAW----FMAAGLEGWAEPRRGVLYQDASQ-LMQASMEGQGVGL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +   +      N  LVR+ +      +T +F  P+ L +T +++A R ++  +   ++
Sbjct: 239 VRRSLAMQEVINGRLVRLFDIDAPSPWTYWFICPQPLLDTFRVRALRAWLHEEVAQFR 296


>gi|290512946|ref|ZP_06552310.1| transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289774559|gb|EFD82563.1| transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 299

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 111/292 (38%), Gaps = 11/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S   AA +L ++ S++S+QI+ LE  +   LF R  R L LTE G 
Sbjct: 6   LNALRCFEAAARLLSLKQAASELCVTASAVSQQIARLEEALNTPLFIRTPRQLQLTEVGE 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R     + ++      LQ  +     K+ ++ T       L   L +F   YP I+I
Sbjct: 66  IYLRAVQPAFLQIAAATQRLQVPAGPE--KVTLSCTSGFAIQWLLPRLADFERRYPKIEI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+   N+ +D+  +  D A+R         L   +L+   +    +P  +   R      
Sbjct: 124 QIGTTNRRVDLLSEGIDFAVRHGVGGW-PELQAYRLLDDDLIPVCSPQLIAPRRSLADAG 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L ++ L+         +    W   V       R   +  +S   + +    G G+ALL
Sbjct: 183 DLLQYPLLHDEHREDWAL----WCEAVGLEPDRARRGPVFTDSN-GVTEAAFAGMGMALL 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               +        LV  +   I      +  Y E        + FR+++  +
Sbjct: 238 RRSFIASALTQGRLVNPLAQPIACPLAYHLVYHETALLAPANRCFRDWLLGQ 289


>gi|212637290|ref|YP_002313815.1| LysR family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212558774|gb|ACJ31228.1| Transcriptional regulator, LysR family [Shewanella piezotolerans
           WP3]
          Length = 304

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 133/296 (44%), Gaps = 6/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L++   +A   S + A  +L ++ ++ S  +  LE ++   LF R  R +T TE+G 
Sbjct: 4   LNDLKLAIRIADLQSVSAAGRELAMTPAAASAALQRLEKKLDCVLFARSTRKMTQTEEGK 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +    LE     L ++  +  G+L++A   DLG+N+++  L +F  + P+++I
Sbjct: 64  LFIESGRKAIQLLEGASNALADNKGELKGELKVALPSDLGRNVVREWLDDFCAVAPELKI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   ++  D+       A+R  + ++ S+L++R+L  +   A A+P YLK    P   +
Sbjct: 124 ILYFGDQMTDLIGQNVHLALRYGQ-LEDSNLMRRQLAMMPRVAVASPDYLKVHGHPTHPR 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL +H ++          +     +  ++       +    N    I  + + G GIA  
Sbjct: 183 ELPQHKILVLNRGGEPWQKWR--FSHKNKQYEVAVTANKSCNDGAVIKDWTLAGQGIAYK 240

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
             + V    +   LV +  D +     +   Y ++   + K+++  +F+  K++ +
Sbjct: 241 SWFDVAKEVNQGQLVVLFADQLAEEIPLQLVYLQSDYPSHKVRSAIDFLKQKSQSY 296


>gi|160899321|ref|YP_001564903.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364905|gb|ABX36518.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 316

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 136/297 (45%), Gaps = 10/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D+    +   +   G+ + AA+ L++S++++S  ++ LE  +G  L  R  +G+  TE 
Sbjct: 1   MDFLAFNILVQIIEHGNLSQAAKFLNMSRANVSYHLARLEKSLGASLLRRTPQGVEATEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +++R    + ++ E  +   Q S+   SGK+ ++     G  ++   L EF   +P +
Sbjct: 61  GQRIYRHARNILNETELVRELAQSSTDDISGKIGLSVPTGYGHLVMAPWLIEFKRAHPQV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + + L+N   ++  D  D AIR+        L+ R +  +     A+  +L++ R P +
Sbjct: 121 VLDIRLENFIDNLLKDSVDIAIRVMSD-PPPMLVARDMGPVRYSLCASSDWLRSHRLPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGI 241
             EL +  LIT G    K       +A   +P+ E  I+  L   SY  +      G G+
Sbjct: 180 PSELSRTPLITSGGESGKVRLQ---IARNGQPLEELDITPTLMSRSYPFLCDCITGGLGV 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            L+PDY+V+   ++  +V  M+D         ++  Y      +G  +A  +F+  +
Sbjct: 237 GLVPDYMVRSQVEDGRVVLAMQDYEFSINQGRMFMLYMPNRFQSGAARALIDFLSDR 293


>gi|172062306|ref|YP_001809957.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994823|gb|ACB65741.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 296

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 120/296 (40%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  +   G    A  ++ LS +++S +++ LE+  G  L  R  R ++LT++
Sbjct: 1   MLLDNLALFLRIVEKGGLAAAGREVGLSPATVSERLAALESHYGAALLTRTTRAISLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  + +  +  ++  +   SG +R++   DLGQ  +   +  FL  +P +
Sbjct: 61  GRTLVAGARRLLAEADELESRVRLGAQTLSGPVRLSAPADLGQARVVPVVDAFLAEHPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+     D AIR R  +  S+L  R L        AAP YL     P  
Sbjct: 121 TVDLHLGDGYVDLVGQGLDFAIR-RGTLADSALRSRSLGRSRRVVCAAPAYLAERGTPRH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             EL  H+ I          E   W   +D  +    +   +V N    +  +CV G GI
Sbjct: 180 PDELAAHDCIVMRFGQELYAE---WPFRIDDALKRVMVRGRRVANDGALVRAWCVAGHGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL     V+ +     LV I+ D       +   YP       +++A    +    
Sbjct: 237 ALKSLLDVEQDLASGALVEILRDFSPGEVDLQIVYPGGAAQPRRVRALIERLAQAL 292


>gi|78063441|ref|YP_373349.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971326|gb|ABB12705.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 303

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 131/299 (43%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F  V  SGSF  AA +L +++S++++ ++ LE  +G +L  R  R L LT
Sbjct: 1   MDERLRGVAEFVDVVESGSFAAAALRLGVTRSAVAKVVARLERRLGTRLLQRTTRQLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +     +  +L  T+  L     +P+G+LR++  +  G+  +   ++  +  +P
Sbjct: 61  DEGLVYYEQCRRLLAELGETEAALDAGQREPAGRLRVSVPVLFGRQCVAPVMRRLVERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I +   ++  D+  D  D A+R+ +   +S+L+ RKL    M   A+P YL+    P
Sbjct: 121 RLEIDVSFSDRVADLVNDGFDIAVRIGELADTSALVGRKLGVQRMGICASPAYLERHGRP 180

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             +  L  H  I +   G   P  +   +      RP G  R+  L   +  +     + 
Sbjct: 181 AGLDALASHVGIAYSRGGQPTPWRVVGADGAVHDHRPAGRLRLDDLLAIADAAAAGAGLA 240

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 LP +++     +  L  +M+        V+   P + +   K++   + +  +
Sbjct: 241 -----WLPCWLMAPYLRDGRLALVMDSNSVSGAEVFAVRPASRQVPSKVRVVIDALVDE 294


>gi|238792649|ref|ZP_04636281.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
 gi|238728005|gb|EEQ19527.1| Transcriptional regulator, LysR family [Yersinia intermedia ATCC
           29909]
          Length = 298

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 125/290 (43%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D+L +F  +  +GS   AAE+  +  S+++R++  LE  +G +L +R AR +T T +G 
Sbjct: 2   LDELALFVSIVETGSLRAAAEKASIPASTLTRRLQKLEQHLGCRLLHRSARRMTPTSEGW 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     + H L+    +L  +  + SG +RI    DL  + L      FL  YP++++
Sbjct: 62  QYYEQCRPLVHSLQQATAKLDVTLNQISGLIRILAPADLANDNLAPAWVSFLTRYPEVRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPLSI 183
           +L L+N   D+    AD AIR+      S L  +KL     +   A+P YL     P S+
Sbjct: 122 ELELNNYTQDLIGSGADVAIRVGAQ-PDSLLNMKKLGHSKEILLVASPDYLAKNGVPESM 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L   +L+    L    ++     +     I         VN     +Q  + G GI  
Sbjct: 181 DALRLRDLVISAPLSTWVIQH----SQNGETIRWQPQGKFCVNGIHLALQAALAGLGILF 236

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            P  +         LVR++ +       +Y  + +      +++A  + +
Sbjct: 237 CPLSLCHNPLQRGELVRVLPEWQGAPREIYAVWSQQRYVPARVRALIDHL 286


>gi|289673016|ref|ZP_06493906.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae FF5]
          Length = 319

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 117/292 (40%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G++L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECLGFAPASRKLGIPKSKLSRRIAGLEERLGVRLIHRSTRTFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +  S  +P G++ I+    L        +  F   +P +
Sbjct: 62  GRDYYAHCVAMLVEAEAAEEAILRSKSEPQGRVVISCPPALAAMGFNETIARFAAEHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+   N+ +D   +  D A+R+R  P++   L+ +KL        A            
Sbjct: 122 QIQVESTNRRVDPLTENIDIALRVRFPPLEDDGLVVKKLGHSAQRLVARADLAARLSATP 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S+  L     +     +P    +  WL      +         L  +    ++Q  + G 
Sbjct: 182 SLDALSTLPSL----DMPSSNHEHRWLLETQPGQYAEIRHTPRLISSDLDMMLQAALQGV 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A LP+ IV++   +  L+ +  +       V+  +         ++   +
Sbjct: 238 GVAQLPELIVREALQDGRLIELFSEHRPKCGIVHAVFASRRGLLPAVRGLLD 289


>gi|167590639|ref|ZP_02383027.1| Transcriptional regulator [Burkholderia ubonensis Bu]
          Length = 323

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 118/290 (40%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L VF  V   GSFT AA+  H+   S+SR +  LET +G++LF R  R + LT  G 
Sbjct: 4   LKALEVFKAVVDHGSFTRAADATHMGVPSVSRAVQDLETMLGVQLFNRTTRKVALTTAGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +    + V    E       + +   +G +RI  +       L   L  F+  +P +++
Sbjct: 64  AVLERVAGVLASYEDLARAGSDEAGDCAGNIRIEVSTMFDTGRLASVLVRFMRAWPKVRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +   D   D AD AI + +     S I R L  + +  YA+P +++        +
Sbjct: 124 DVRRVDHQTDALGDLADLAIVVGRAAP-PSCIARALADVPLGLYASPAWVERVGAVAHPR 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++   + +  G    + M       + +      R + L+ N   +++   V G G+A+L
Sbjct: 183 DVQPESCLATG--AQQSMWTLVDERSGEHATLSAR-AALRTNCPHALVAAAVDGEGVAIL 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P+++         LVR+++            Y        +++   + + 
Sbjct: 240 PEHLAHAPVVRGELVRVLDAWQVEPLDACVVYRSRRNLPARIRKLTDCLL 289


>gi|145633076|ref|ZP_01788808.1| glycine cleavage system transcriptional activator [Haemophilus
           influenzae 3655]
 gi|144986302|gb|EDJ92881.1| glycine cleavage system transcriptional activator [Haemophilus
           influenzae 3655]
          Length = 297

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +GI+LF R  R L LTE G 
Sbjct: 8   LNSLKSFESAARYLSFTKAADELCVTQAAVSHQIKLLEEFLGIELFKRKNRSLELTELGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L      L      P   L I+     G   L  +L EF  LYP I++
Sbjct: 68  AYFVDINKILRRLNEATERLLTLKTDPH--LNISVPQTFGIQWLVPHLSEFNQLYPQIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI         +L   +L   ++   A+P  L      +  +
Sbjct: 126 RLTGVDQDEGLLNKEIDLAIYYGLG-NWQNLQVDRLCEENLLILASPELLDKN-PIIQPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH LI             N L   D  I +  +     +     +Q  + G GI L 
Sbjct: 184 DLKKHTLIHI-HTRDNWQAMANHLQLDDLNIQQGPL----FSHTFMALQAAIHGQGIVLA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +     +N +L  ++   +    + Y        +  K++AFR +I 
Sbjct: 239 NRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQAFRQWII 288


>gi|212637412|ref|YP_002313937.1| transcriptional regulator [Shewanella piezotolerans WP3]
 gi|212558896|gb|ACJ31350.1| Transcriptional regulator [Shewanella piezotolerans WP3]
          Length = 305

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 129/298 (43%), Gaps = 10/298 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  +  +GS + AAE L LS+S +S  +  LET +G++L +R  R   LT 
Sbjct: 1   MDYLRHMAIFKQIVDAGSISAAAENLDLSKSVVSHHLKSLETAIGVQLLHRTTRKQQLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++   ++    +T   E +++  K +G LRI+    L  +++   + E       
Sbjct: 61  AGTDFYQRCIQLADISQTAWQEARDTGGKLAGPLRISAPHALIDSIVAPAIAELCRDNAQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++  + + ++ ID+  D  D  IR+ K + SS+L+QRKL        A+P Y++  +  +
Sbjct: 121 VKPTISVADQRIDLLSDDVDLVIRVGK-LPSSNLMQRKLGNFRDVVCASPTYIERHKHEI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGE-----PRISCLQVNSYLSIMQYCV 236
             +     + I       +   +F  LA               I+    ++  ++     
Sbjct: 180 DAEHWQSLDYIANSWQKARLTHEFEPLAHPAYEQASMLKKLEFIANRFTDNSSAVCALAK 239

Query: 237 LGSGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G G+ALLP+++    +    L  ++ D   P   VY  +    K    +K+    + 
Sbjct: 240 AGLGVALLPEFVFQQAEQQNQLAMLVPDHQCPLNAVYAVHDFGHKPPQLIKSTIELLM 297


>gi|295688271|ref|YP_003591964.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295430174|gb|ADG09346.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 301

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 123/299 (41%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D +   +F  V   G F  A   L   +S++SR+I+ LE  +G++L  R  R   +T
Sbjct: 1   MAVDLNDYVLFAEVVAHGGFAAAGRALRQPKSTLSRRIAALEARLGVRLIERSTRRFRVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   H     +    +     + E+  +P G +R +  + L +  L    + ++  +P
Sbjct: 61  EVGQAFHERCRLLMLDAQQADAVVAEALSEPHGLVRCSCPVGLVEA-LSPTFQTYMARFP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            +++Q++  ++ +D+  +  D A+R+R  +   ++L  R L        A P  L     
Sbjct: 120 KVRLQVVAIDRPVDLIAERIDLAVRVRLSLDTDAALTLRTLGRSTRILVADPR-LAMRTV 178

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
              ++ L +   ++  D I +   ++  +              +    + ++      G 
Sbjct: 179 GQPLEALAELPTLSPTDQIGEL--EWELVDAEGEARTVKHTPRMTCGDFGALRDAAAAGL 236

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+A LPD+  +D   +  LVR+  +  +    V+  +         ++A  + +    R
Sbjct: 237 GVAFLPDHACRDLLESGRLVRVFPEWSSRVGIVHVVFTTRRGLPPAVRALIDQLADAFR 295


>gi|73539022|ref|YP_299389.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
 gi|72122359|gb|AAZ64545.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia
           eutropha JMP134]
          Length = 312

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 129/291 (44%), Gaps = 9/291 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W    +F  V   G FT  AE   + +SS S  ++ LE+++G++LF R  R + +TE
Sbjct: 3   TIEWKDWEIFCRVVEGGGFTQGAELAEVPKSSASAAVARLESQLGVRLFERTTRRVRVTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L+   + ++ +L     E    S + SG LRI+T  ++G   L   L   + L+P 
Sbjct: 63  RGQRLYDRVAPLFAELHEINAEAASVSDEVSGVLRISTPYEVGSQHLSDGLSRLMRLHPR 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ + +     D+     D A  +    +Q +S   +++V I    YAAP  +++   P
Sbjct: 123 LRVHVDVSWDQPDLIRHGYDLAFVMTNTRLQDTSFASKRVVLIERGFYAAPALIRDRGLP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + Q+L      T G+      E         R   EPRI     ++    ++  + G G
Sbjct: 183 RTPQDLAGWP--TLGNADDHFWEFLRDDIETARLDVEPRIC---THNAELRLKAAIDGLG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           +A L    V+D      LVR++    +    VY   P        ++ F +
Sbjct: 238 VARLSPRFVQDQIQQGQLVRVLPAYSSSPLKVYVLMPARKLMPASVRVFLD 288


>gi|226330938|ref|ZP_03806456.1| hypothetical protein PROPEN_04861 [Proteus penneri ATCC 35198]
 gi|225201733|gb|EEG84087.1| hypothetical protein PROPEN_04861 [Proteus penneri ATCC 35198]
          Length = 295

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 137/295 (46%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D++R F  V  +GSFT AA+ L LS+S +S  I  LETE+ + L  R+ R  +LT
Sbjct: 1   MQNQIDRIRSFIAVVDTGSFTQAAKYLRLSKSMVSIHIKALETELDVSLLNRNTRRFSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L++    V  +LE T  + +    +  G LR+++T + G++ +   L +F+ L+P
Sbjct: 61  ETGEMLYQDFRLVLSQLEQTLDKARLGQQELQGSLRLSSTTEFGEHYILPLLNQFIQLHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++IQ   ++   D+     D AIRL   ++ S+    KL    +    +P  L+     
Sbjct: 121 KLKIQYAFNSSIEDLINHKLDLAIRLG-TLKDSNYRSTKLADYKISLVISPGLLQKF-SI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +L     +   +L    +        +   + +   +  + N+  ++ +  +  +G
Sbjct: 179 KTIDDLKVIPYLANSNLRQSKLSPSLEFNILLSQLSQD--AYFETNTISALKKMVLSHTG 236

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +A+LP + +        LV +  D+   + +V   +P +     K + F +++  
Sbjct: 237 MAILPHWFIHQELLEEKLVVLFPDISLLTQSVNIIFPYSEYIPRKTRLFIDYLKE 291


>gi|332716870|ref|YP_004444336.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325063555|gb|ADY67245.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 300

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 123/294 (41%), Gaps = 10/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L+ F   AR G+FT AAE+L+L+QS++SRQI  LE + G++LF R  R + L+E G
Sbjct: 10  DIVTLQAFECAARHGNFTRAAEELNLTQSAVSRQIGELEAQTGMQLFERIRRRVVLSEAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K       +  + E   +    +    +  L +AT    G   L   L  F+   P++ 
Sbjct: 70  RKFLPDVRRLLQQSEQLMVRAVSAGTSHA-SLSVATLPTFGSRWLMPRLHRFIDANPEMT 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I +   +   D   +  D AI   +P+ +       L    +   A+P  L+        
Sbjct: 129 ITIGSRSHPFDFDEEGFDLAIHYGQPVWAHG-TCTFLCNEVIVPVASPALLQRAGM-REP 186

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++ ++  L+          E       ++    E      + + +  I++  +   G AL
Sbjct: 187 EDFNRQPLLHVTTRPKLWTEWLE----MNGVTAENAYRGSRFDQFSMIIEAAISSIGFAL 242

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP Y+++    +  L  + +  +    + Y   PE  ++    +AF+ ++  + 
Sbjct: 243 LPKYLIEAELVSGRLEIVFDIPLQTDKSYYVALPEGRQDNVLARAFQAWLLDQV 296


>gi|88799223|ref|ZP_01114802.1| substrate-binding transcriptional regulator, LysR family protein
           [Reinekea sp. MED297]
 gi|88777982|gb|EAR09178.1| substrate-binding transcriptional regulator, LysR family protein
           [Reinekea sp. MED297]
          Length = 299

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 132/291 (45%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + ++  F  VA+ GSFT AA  L +S+S +S+ I  LE  +G++L +R  R LTLT QG 
Sbjct: 4   FTEIEAFIEVAQQGSFTQAAAHLDVSRSRVSQLILRLEERLGVRLMHRTTRSLTLTPQGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYPDIQ 123
           +  +      ++L + + +L+  S + +G +RI +     G+ +L   L + +  +P++ 
Sbjct: 64  QFLQRCRTGMNQLSSAEADLKMMSHQLTGPIRINSVGGIFGEQILTHALTDLMSNHPELS 123

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +   +  +D++ D  D  +R+     + +     L  +H    A+P ++     P   
Sbjct: 124 VTVDYSSMLVDMNRDPVDLVLRIGHA-PAENTESAYLGEVHHSLCASPAFINRYGFPQHP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +   I      PK  E    L+T +R +  P  S    NS  +     + G G++ 
Sbjct: 183 DDLVRLPTIC---GTPKIWE-LEHLSTGERQVITPNASWRSGNSN-AQRIATIEGLGVSR 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L   I K   DN  LV +M          +  +P   K T + +  R+ + 
Sbjct: 238 LQTLIAKPELDNGKLVSVMPQWRIEPTFFWLMWPRDKKLTLRNQTVRDHLI 288


>gi|302186753|ref|ZP_07263426.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 319

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 115/292 (39%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G++L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECLGFAPASRKLGIPKSKLSRRIAGLEERLGVRLIHRSTRTFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +  S  +P G++ I+    L        +  F   +P +
Sbjct: 62  GRDYYAHCVAMLVEAEAAEEAILRSKSEPQGRVVISCPPALAAMGFNETIARFAAEHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+   N+ +D   +  D A+R+R  P++   L+ +KL        A            
Sbjct: 122 QIQVESTNRRVDPLTENIDIALRVRFPPLEDDGLVVKKLGHSAQRLVARADLAARLSATP 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S+  L     +     +P    +  WL                L  +    ++Q  + G 
Sbjct: 182 SLDALSTLPSL----DMPSSNHEHRWLLETQPGHYAEIRHTPRLISSDLDMMLQAALQGV 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A LP+ I ++   +  LV +  +       V+  +         ++   +
Sbjct: 238 GVAQLPELIAREALQDGRLVELFSEHRPKCGIVHAVFASRRGLLPAVRGLLD 289


>gi|300715785|ref|YP_003740588.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299061621|emb|CAX58736.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 299

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 120/297 (40%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L     VA++G F  AA     + S +S  +   E ++GI+LF+R  R ++LT
Sbjct: 1   MKLDISLLHAVVAVAKAGGFREAARVTGSNPSRLSDAVRRAEQQLGIRLFHRTTRSVSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L        +++E+   ++      PSG LR+   I + + +L   +  FL  YP
Sbjct: 61  DAGRALMARLMPAMNEMESALDDINRYRDTPSGTLRLNVPISVSRLILPTIVPAFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DIQ++++ ++   D+  +  D  IR  + ++   +I   +          A+  YL    
Sbjct: 121 DIQLEIVAESNVQDVFREGCDAGIRYDEKLEQD-VIAVPIGPRKQRFALAASADYLNQAG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--NSYLSIMQYCV 236
            P     L +H  +  G        ++ +    +    +P  + L          +   +
Sbjct: 180 RPTHPHHLIQHRCLR-GRFASGVEPEWEFEREGENVRVKPPAALLVSIGAGVDLAVDTAI 238

Query: 237 LGSGIALLP-DYIVK--DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G GI  L  +++        L  I++         +  YP+       L+AF +F+
Sbjct: 239 AGGGIVYLFEEWLAPYFARGELEPILQPWWLTFPGPWLYYPDRRLIPAPLRAFIDFV 295


>gi|26991352|ref|NP_746777.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24986415|gb|AAN70241.1|AE016663_9 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 316

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 127/290 (43%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-ARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 10  ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +    
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQGYLDSHAPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L KH  I++ D +    E       +           L+  S ++     + G G
Sbjct: 189 RQVTDLAKHPFISYVDDLAFSSELLYLANLIPNASAH-----LRSTSVIAQYTAALQGRG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +P LV ++ + I  +   +    E L+   ++    ++I
Sbjct: 244 LAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 293


>gi|330504438|ref|YP_004381307.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918724|gb|AEB59555.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 307

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 121/297 (40%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++V   V  + SF   A+ L +S  S++R ++ LE  +G  L  R  R L LTE
Sbjct: 1   MDRFQEMKVLLAVTEAESFAGGAKLLGISPPSVTRAVAALEARLGTLLLARSTRSLRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  +LE  +      SV+P G+L +   +  G+  L   + ++L  YPD
Sbjct: 61  AGQRYVEDCRRILLELEEAEELAAGGSVRPRGRLTVTAPVMFGELFLIPRIAQYLDTYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I  +L ++ +++  +  D A+R+   +        ++  I     A+P +L     P 
Sbjct: 121 VEINALLVDRVVNMMEEGIDVAVRIGS-LPEGDHPALQVGQIRPVVCASPEFLDRVGRPR 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL    ++           +F      D   G        V+S  + +    LG G 
Sbjct: 180 HPDELRDAPIVMSSASGLLTHWNF---VGADGVFGFTPAPRFTVSSNQAAIGAARLGWGY 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y V D      +  ++E    P+  V+  +    + + K++ F +      R
Sbjct: 237 TRVLSYQVADALARGEIELVLETFEPPALPVHIIHQGGRQVSAKVRTFVDHCAASFR 293


>gi|190891684|ref|YP_001978226.1| transcriptional regulator protein, LysR family [Rhizobium etli CIAT
           652]
 gi|190696963|gb|ACE91048.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli CIAT 652]
          Length = 309

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 117/297 (39%), Gaps = 12/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LR F   AR  S T AAE+LHL+  ++SRQI  LE  +G+ LF R  R + LTE G 
Sbjct: 8   LQTLRAFEATARRLSMTMAAEELHLTHGAVSRQIKALEDHLGVPLFRRLTRKIELTEAGI 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 + +    E  ++         + +L I+  +      L   L   +  YPD  +
Sbjct: 68  AFFGTVTRL--LSELARVAEDIRRKNDTTRLVISAGVSFASKWLTPRLHRLMAHYPDFDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +  +D +    D A++             +++   +    AP Y        +  
Sbjct: 126 HLQVTDAPVDFASGDVDVALQYGTG-SYPFAAAERIMNETVSPVCAPEYRDRMGGLATPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L K  LI     I        W A ++ P  + R      +     ++  + G G+AL 
Sbjct: 185 DLAKCKLIH---EIGMTTTWERWFAMMELPYPKTRGPGY--SHGSMSIEAAIRGEGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              +V ++     LV +         +     Y    ++  KL+AFR++I  + R++
Sbjct: 240 RSVLVAEDLAQGRLVALFPKARLDVEWGYDLVYAIGTQDHPKLRAFRSWISGEVREF 296


>gi|153010679|ref|YP_001371893.1| LysR family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562567|gb|ABS16064.1| transcriptional regulator, LysR family [Ochrobactrum anthropi ATCC
           49188]
          Length = 293

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 121/295 (41%), Gaps = 12/295 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LRVF VV R  +F  AAE+L ++Q+++++QI GLE E+G+KLF R  R L +TE  
Sbjct: 6   SLNGLRVFEVVTRHLNFRLAAEELGVTQAAVAQQIRGLEAELGLKLFERQPRTLVMTEPA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                     +  L      L+         L I+ T       L   L EF   +PDI+
Sbjct: 66  RAYIANVRRAFDLLSEATEMLRPEPQH----LTISVTPTFASKWLIPRLAEFTHAHPDIE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++  +K  +   D  D A+R  +P     L    L    + A A+P  ++   +P   
Sbjct: 122 LRIVASDKVANFQTDAVDLAVRYGEPPFGPGLNAELLFEHVIVAVASPVLVERLGDPGLP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L+++ L+              +L              ++ N     +   + G G+AL
Sbjct: 182 ENLERYPLLHDAHNF-----WPQYLEKAFPGGVSTSPKNIRFNQTSLAIDAAIAGQGLAL 236

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V+      +LV+ M   +      Y       ++   + A + ++   +R
Sbjct: 237 ASRFFVEKEVAAGSLVQPMATELRVGADFYAVSLRKPRHPESVDAVKAWLKSASR 291


>gi|170726782|ref|YP_001760808.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812129|gb|ACA86713.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 292

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 111/287 (38%), Gaps = 10/287 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F  VA +G+F  AA+ L +  S +S  +S LE  +G  L YR  R ++L+
Sbjct: 1   MYKHLQSIATFIAVAEAGAFNKAADALGVQASVVSHHVSKLEEHLGTTLIYRTTRKVSLS 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   + +          ++ ++  +  G L ++    + +  ++  +  F+ L+P
Sbjct: 61  EHGRILFEASKKWLDGTSQAVDQIMDAQDEAIGALNVSLPAFVPEPEVENAILNFIELHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L   +  +D+  D  D  IRL  P   SS I RKL        A+P+++     P
Sbjct: 121 HVSITLNYSDTLVDLVEDNFDLCIRLGNP-PDSSFIARKLAQTQHILVASPNFISRHGMP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L K   ++   L     +      +  +      I  +  N+            G
Sbjct: 180 QEPLQLTKLPYVSMDGL----GDTLTLTRSKQKVEVHNTICQINTNNIYGAKAAAENSLG 235

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYP--EALKNTGK 282
           I  LP  + +       LV I+ +    SF +   +P         K
Sbjct: 236 IGNLPVALCEKAIAEGKLVHILPNWKLSSFPLIAIWPDASRRHTLAK 282


>gi|260433699|ref|ZP_05787670.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417527|gb|EEX10786.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 303

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 128/292 (43%), Gaps = 13/292 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    + R GS + AA++L L+QS++SRQ+  LE ++G++L  R  + LTLT       
Sbjct: 14  LRALEALDRLGSASAAADELSLTQSAVSRQLQTLEAQLGVRLIQRDRKRLTLTPAAQDYV 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               +     +  Q  L+       G L +A     G   L   L +F  L+PDI I + 
Sbjct: 74  AEIRQ--SLNQIAQASLRLHVTPAGGTLHLAILPTFGMRWLVPRLPDFARLHPDITINMS 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHA-YAAPHYLKNCREPLSIQEL 186
              +  + + +  D AI   +P    +  +R L+ +       AP  L +   P +  EL
Sbjct: 132 TRLRPFNFATEPFDAAIHFGEPDWPGT--ERLLLKVERVVPVCAPTLLPS-GPPGNAAEL 188

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            K  L+    +  +     +W A        P    +  + + +I Q  V G G+ALLP+
Sbjct: 189 LKLPLLH---IQTRPRAWQDWFAQQGVTSPSPLPGTVH-DQFTTISQAAVHGLGVALLPN 244

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           Y+++ +     LV      +      Y  +P++  +   L+ FR+++  +A+
Sbjct: 245 YLIEQDLATGRLVAAYSGAVETMGAYYLVWPQSKSDEPSLREFRHWLASQAQ 296


>gi|239994569|ref|ZP_04715093.1| transcriptional regulatory protein [Alteromonas macleodii ATCC
           27126]
          Length = 294

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 138/295 (46%), Gaps = 7/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  +AR+G    AA+ L +  +++ R++  LE  +  KLF    +G  LT  
Sbjct: 1   MNWDDMRLFLGLARNGRVAIAAKGLKVDPTTLIRRVKKLEDSLNCKLFELTKKGYVLTTH 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+L     +  H     Q EL +     +G +R++ +   G   L   L +F   YP I
Sbjct: 61  GSELVTYIEKAEHYFLEAQNELGDERSHLAGTIRVSVSEGFGSWFLAPLLPDFKKQYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+L+  +  ++++   AD AI L KP     L+ +KL   +++ Y     + +  EP +
Sbjct: 121 SIELVATSGFLNLNKREADMAILLEKP-SKGLLVTQKLTDYNLYLYTHQSLISDN-EPRT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +QEL   NL+++   +    +               ++S L+  S  +  Q  V G+G+ 
Sbjct: 179 LQELTAFNLVSYVPDLVYAPQ-----LKFIEETALSQLSALRSTSINAQYQMLVNGAGVG 233

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +LP ++ +  P LVR++E+ I    T +    +   +  + + F  ++  K   +
Sbjct: 234 ILPKFMAETQPGLVRLIENEIHIKRTFWLATHKETHSQARFQVFTKWLTDKVTQY 288


>gi|229589888|ref|YP_002872007.1| putative LysR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361754|emb|CAY48636.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 291

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 130/287 (45%), Gaps = 8/287 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  RVF  V R  +   AA  L + Q+++ R+++ LE  +   LF R + G  LT  
Sbjct: 1   MNWDDARVFLAVCRESTLRGAARVLGVDQATVGRRVNALEKSLSATLFLRTSEGYALTAV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G        ++       + ++Q    + +G +R++TT  L  + L   +      +PD+
Sbjct: 61  GEAALLSVEKMERSALDLERQIQGLDERLTGTVRVSTTDSLAIDFLIPAIACLHAKHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL    + + ++   AD A+R  +P  +  LI R++    +  +A+  Y+     P  
Sbjct: 121 RVQLDASTQILSLAKREADIAVRNTRP-DNPDLIARRIARWSVGLFASQGYIDRHGVPEP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               D H+L+ +   +    +    +A V  P+G  RI    ++S L + +    G GI 
Sbjct: 180 GSLFDGHDLVVYQPYLQSQKD----MALVSEPLGRGRIVA-ALSSSLLVRRSIAAGIGIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRN 288
            +P Y  + +  LVR+  +   P  + V+      L++T +++   +
Sbjct: 235 EIPVYTGERDG-LVRLWPERTRPLPYDVWLVTHADLRHTARVRVVID 280


>gi|148548768|ref|YP_001268870.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148512826|gb|ABQ79686.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 297

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 126/294 (42%), Gaps = 12/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LRVF VVAR  +F  AA++L ++Q+++++QI GLE  + ++LF R  RGL LT+ G
Sbjct: 10  SLNALRVFEVVARHLNFRLAADELGVTQAAVAQQIRGLEASLNLRLFERLPRGLALTDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        ++     L+  +      L ++ T       L   L  F   +PDI 
Sbjct: 70  LGYSGSIRNALAMIDEATRLLRPQASH----LTVSVTPTFASKWLIPRLGRFAHSHPDID 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++  ++    + D  D A+R  KP   + L    L+  H+ A A+P   +  + P S 
Sbjct: 126 LRVLATDRLSHFNTDGVDLAVRYGKPDIGAGLNSELLMEQHIVAVASPRLFEASKVPTSF 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L    L+              +LA +    G+     L+ N     +   + G GIAL
Sbjct: 186 EQLQAFTLLHDAHDF-----WPRFLAQLFPQHGQATAKNLRFNQTSLAIDAAISGQGIAL 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                V D+     L ++    +    + Y  +P  L+    L   + ++  +A
Sbjct: 241 ASLAFVSDDLVAGRLTQVFAQQLRLDKSFYLVWPRKLQQPESLGIVQRWLKQQA 294


>gi|114704437|ref|ZP_01437345.1| putative transcriptional regulator (LysR family) protein
           [Fulvimarina pelagi HTCC2506]
 gi|114539222|gb|EAU42342.1| putative transcriptional regulator (LysR family) protein
           [Fulvimarina pelagi HTCC2506]
          Length = 311

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 112/276 (40%), Gaps = 4/276 (1%)

Query: 16  RSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYH 75
           R+GSFT AA  L LSQS++S+ +S  E    ++L  R  R +  TE G +L      V  
Sbjct: 17  RAGSFTKAARTLGLSQSALSQIVSRAEARFELRLLTRTTRSVAPTEAGERLIAALGPVLD 76

Query: 76  KLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDI 135
            L+     L++    PSG +R+         +L+  L   L  +P++ +++ LD    D+
Sbjct: 77  DLDAVVASLRDLRDNPSGTIRVTAVEHAVWTILRPALATILSDHPNLNVEVTLDYGIADV 136

Query: 136 SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFG 195
             D  D  IRL   ++   +  R    I M    +P Y     +PL   +L  H  I   
Sbjct: 137 VADRFDAGIRLGGEVEKDMVAVRVGPDIPMAIVGSPAYFDRHPQPLEPFDLRHHRAINLR 196

Query: 196 DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---N 252
                 +  +  + +  R         LQ  +   I+   + G G+A +P  +V +    
Sbjct: 197 LPTSGTVNPWRMMES-GRESRVRVEGQLQFGALAPIVDAALDGLGLAYVPRDMVDEPLRT 255

Query: 253 PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
             L+ +++   T     +  YP     +   + F  
Sbjct: 256 RRLISVLDSFTTDLPGYHLYYPSRRHASAGFRLFVE 291


>gi|33152164|ref|NP_873517.1| DNA-binding transcriptional activator GcvA [Haemophilus ducreyi
           35000HP]
 gi|33148386|gb|AAP95906.1| glycine cleavage system transcriptional activator [Haemophilus
           ducreyi 35000HP]
          Length = 297

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 124/293 (42%), Gaps = 14/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  +FT AA+ L ++Q+++S QI  LE  +G+ LFYR  R L LTE G 
Sbjct: 8   LNALKAFESAARHLNFTKAADDLFVTQAAVSHQIKLLEDFLGVPLFYRRNRLLELTEIGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       ++ ++       +         L I+TT   G + L   L EF   YPDI++
Sbjct: 68  QYFEEIQPLFQQI--ALSTEKIKLKNSRQILSISTTPSFGMHWLVPRLNEFHHKYPDIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+   +D  +     D AI         +L   KLV   +   A+  YL+        +
Sbjct: 126 RLVTAAQDEGLLGKDIDVAIYYGSG-NWQNLEAVKLVQARIMILASSEYLQRNPM-TKPE 183

Query: 185 ELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L   NLI        K M ++  L  VD   G      +  N+ ++I Q      G+ +
Sbjct: 184 DLTGKNLIHVCSHTKWKQMVEYLQLTNVDTESGP-----MYSNTSMAI-QAAKHSQGVVV 237

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLK 293
               + +   N   ++E   T  +     Y  YP  + +  K++ F  +I  +
Sbjct: 238 ANCILAQAEINEGSVIEPFATEVYDEKAFYVVYPTQMSDIVKVQHFVEWITQE 290


>gi|163761430|ref|ZP_02168504.1| putative LysR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162281425|gb|EDQ31722.1| putative LysR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 310

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 129/298 (43%), Gaps = 21/298 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF  VAR GSF+ AA++L ++Q+++S QI  LE  +G +LF R  R +  TE   
Sbjct: 9   LNALRVFEAVARHGSFSRAADELGMTQTAVSYQIKLLEGHIGDQLFLRQPRQIVNTETAE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           ++     + +  L       Q+++ +    L I ++     + L  NL  F L +P I +
Sbjct: 69  RMLPSVVKAFDFLGEAMALAQQTASE---TLEIHSSPTFASHWLARNLGAFQLEHPGIAV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+  +K  D + D AD AIR         L  + L         +P    +        
Sbjct: 126 RLLRVSKITDFNRDPADVAIRWGVG-PWPDLECQLLGRFTYAPMLSPALAASIGGVNQPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---MQYCVLGSGI 241
           +L K  +I       +     +W A +   I  P ++  + ++Y+         + G G+
Sbjct: 185 DLLKLPIIG-----AQQEAWQHWFAAMGEAI--PDLTSHKQHNYIEQDLSGNAALAGQGV 237

Query: 242 ALL-----PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           A+L     PD +   +  LV            V+  YP + +NT K+KAFR +I    
Sbjct: 238 AMLNHIYYPDELA--SGRLVAPFHTPSGDDVGVWLVYPHSRRNTPKIKAFREWITAAV 293


>gi|330826482|ref|YP_004389785.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|329311854|gb|AEB86269.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 307

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 127/293 (43%), Gaps = 6/293 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  G F  AA  L ++ ++++R ++ LE +VG +L  R  R ++LTE G+   
Sbjct: 3   MRVFQAVADEGGFAAAARALDMAPATVTRFVADLERDVGARLLQRTTRRVSLTEVGAAYL 62

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +   QE +    G LR+  +  L  ++L   + +F   +P + + + 
Sbjct: 63  ARVRTILAEVGEARAMAQEYTGGMGGVLRVCASPALATHILAPLVAQFRQRHPAVLLDIH 122

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +   D D+ +   D  +        + LI R   +      A+  YL     P + QEL 
Sbjct: 123 VRIGD-DLPIADHDITLLGTPSDYDADLIARPFASTVGVLCASLAYLGRRGAPRTPQELS 181

Query: 188 KHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H+ +    +  +   +   +  A  +R           VN   ++M   + G+GIA+L 
Sbjct: 182 EHDCLLADHMADMRHGVVRLSHPAHGERLTEVAVRPVCVVNHSDTLMGIALGGAGIAVLS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +V ++     LVR++       +T+Y   P       + +AF +F+    R
Sbjct: 242 VDLVAEHLQSGRLVRVLAPWTCGHYTLYAALPSRKFMPTRTRAFLDFLSEHTR 294


>gi|186475930|ref|YP_001857400.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192389|gb|ACC70354.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 300

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 125/292 (42%), Gaps = 14/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G 
Sbjct: 7   LNALRAFEASARHLSFTRAALELNVTQAAVSQQVRMLEERLGATLFKRLPRGLAITDEGL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L  V S+ + ++E    + +         L +          L   +K F   +P +++
Sbjct: 67  ALRPVLSDAFDRIEAVLRQFEGGHFHE--VLTVGAVGTFAVGWLMPRMKAFRDAHPFVEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+ +N  +D+  +  D AIR        S    KL    +     P   +    P    
Sbjct: 125 RLMTNNNLVDLGAEGLDFAIRFGDGTWPGS-RASKLFDAPLSVLCTPEIAQRLHTP---A 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  +  +W A         R      +S   +++  + G+G+AL 
Sbjct: 181 DLAGETLL----RSYRADDWASWFAAAGLAPRPVRGPVF--DSSRLMVEAAMQGAGVALA 234

Query: 245 PDYIVKDNPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  + + + ++ R+         + + +  + +A   +  ++AF  ++  +A
Sbjct: 235 PASMFERDLSMGRLACPFAIHVHTGSYWLTWQKAKPASPAMRAFSQWLATEA 286


>gi|71909445|ref|YP_287032.1| regulatory protein, LysR:LysR, substrate-binding [Dechloromonas
           aromatica RCB]
 gi|71849066|gb|AAZ48562.1| transcriptional regulator, LysR family [Dechloromonas aromatica
           RCB]
          Length = 295

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 133/289 (46%), Gaps = 11/289 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W  LRVF  +AR G+   AA     SQ ++ R++  LE  +G  LF R   G  LT+
Sbjct: 11  AMEWSDLRVFLAIARVGTLGGAARLSGQSQPTMGRRLRALEAALGCALFQRTNDGFVLTD 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      +       Q +L        G+LRI+ +   G ++L   + +F   +  
Sbjct: 71  EGQSLLPHAEHMEEAALALQRKLAGQPGTLHGQLRISASDWFGAHVLSPLIADFRREHSG 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LI D++   ++   AD A R+ KP +   +IQRKL+ +    YAAP YL     P 
Sbjct: 131 ISVELITDSRLYSLARREADVAFRI-KPFEEPDVIQRKLMHMEYALYAAP-YL---PAPQ 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +    +LIT      + + D  WL    R +          NS  +    C+ G GI
Sbjct: 186 A-GDGKGCSLITMDSAYAE-IPDARWL----RKLLPNSSIGFASNSREAQATQCMSGGGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+LP  +    P + ++      P   VY  Y + L++ G+L+ F +F+
Sbjct: 240 AVLPCLLGDRIPTIQKLDLGEKAPGRDVYLGYHKDLRHLGRLRVFLDFV 288


>gi|30020498|ref|NP_832129.1| LysR family transcriptional regulator [Bacillus cereus ATCC 14579]
 gi|229127805|ref|ZP_04256791.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-Cer4]
 gi|29896049|gb|AAP09330.1| Transcriptional regulators, LysR family [Bacillus cereus ATCC
           14579]
 gi|228655570|gb|EEL11422.1| Transcriptional regulator, LysR [Bacillus cereus BDRD-Cer4]
          Length = 300

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 137/305 (44%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKVLLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L   H+       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISIPLYKSHLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  + +       L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKLNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP   +   Y +        + F   + + 
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIKI--ENPTPIIEIGLIYRKDKYMCAATREFIEQLKIT 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|13471779|ref|NP_103346.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022523|dbj|BAB49132.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 300

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 132/290 (45%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            +    F  V  SGS + AA ++ LS+S IS ++S LE  +G +L  R  R L +TE G 
Sbjct: 4   LEAAAAFVAVTESGSISEAARRMGLSKSVISERLSELERSLGTRLLDRTTRKLFITEAGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     +  ++   + E+ E   + +G LRI+     G   L   L  FL  +P I++
Sbjct: 64  GFYERAKRIMQEVADAKAEIAEDRGELAGPLRISAPTSFGILHLGPALYGFLARHPGIEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L +D++ + +  D  D  +R    +    +I +KL +      A+P Y++    P +  
Sbjct: 124 TLDVDDRFVSMVADGYDAIVRHGPVVDGGPVIVKKLASSRRFLVASPDYVERFGLPATTD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-ISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +H  I +           +W   + R +   R ++ L+VN+ + +    + G G+AL
Sbjct: 184 DLKRHKGIIYS-----IRGAADWRFKISRRLVTIRPVTALRVNNGILMRDAALAGLGLAL 238

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP Y ++    +  L  I         T+Y   PE  + + KL+A   ++
Sbjct: 239 LPAYFIRTEIADKRLTVIDVGAEPEGATIYIACPEDRRGSAKLRALTAWL 288


>gi|218460375|ref|ZP_03500466.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Kim 5]
          Length = 311

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 129/295 (43%), Gaps = 12/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR  +F+ AAE+L L+Q +ISRQI+GLE ++G+ LF R +RG+ LTE G+  
Sbjct: 14  ALAAFDSVARLSTFSAAAEELSLTQGAISRQIAGLEEQLGVLLFERTSRGVILTEAGTDY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +    ++ +    L   + + + +L +A     G   L   + +F+  +P+I +  
Sbjct: 74  ARAIAIALAEIRSA--SLHAMTKQHNDQLNLAILPTFGTRWLMPRIPQFVARHPEITLNF 131

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   D  D AI + +P          L+   +   A+P +L +       ++L
Sbjct: 132 ATRIGMFDFDRDDIDMAIHIGQP-DWPGAESTFLMEEMVAPVASPSFLSSH-PIAKPEDL 189

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L+            F  L     P        ++   + ++ Q C+ G G+AL+P 
Sbjct: 190 LRLPLLQMASRPGAWNHFFESLEVNGTPS-----QAMRFEQFSNVAQACIAGLGLALMPL 244

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +++     N  LV+     +      Y   P + K+   + AFR ++  +   ++
Sbjct: 245 FLIDSELANGQLVQAFPHQVKSPSAYYAVAPLSRKDFRPVVAFRAWLLEEVERYQ 299


>gi|254225979|ref|ZP_04919580.1| LysR substrate binding domain protein [Vibrio cholerae V51]
 gi|125621513|gb|EAZ49846.1| LysR substrate binding domain protein [Vibrio cholerae V51]
          Length = 287

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 135/301 (44%), Gaps = 34/301 (11%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  +GS + AA++L++S+S +S+ +  LE E+G+ L  R  R  TLT+ G 
Sbjct: 4   LRQMAIFAHVVEAGSVSAAADKLNVSKSVVSQHLKTLENELGMVLMKRTTRRQTLTDVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    E+    E+      +   +P G+ RI  +  L  +L+   + E +  YP ++ 
Sbjct: 64  QFYLKCKELNTIAESAWDIASDYQTEPQGRFRITASHALMDSLVAPVIAELMTQYPKLKP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYA----------APHYL 174
           +LI D++ +D+  +  D AIR+  P   SSL Q+++                   +P Y+
Sbjct: 124 ELIADDQHLDLMANDIDMAIRIG-PSHDSSLKQKRIGEFRDVLCGLEERKTKLNESP-YI 181

Query: 175 KNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQY 234
            N  +P  I+    H+         +  E   W+            +    NS+ + +  
Sbjct: 182 ANVWQPKQIE----HHF--------RSAEGQTWIYRQQ--------ASCTANSFHTCLAL 221

Query: 235 CVLGSGIALLPDYIVKDNP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              G+G+ ++PD+ + +    LV ++ +   P  TVY   P +      +K   +++  +
Sbjct: 222 IRSGAGVGIVPDFYLSERGSQLVNVVPNYTLPINTVYTLTPYSSHTPTIVKLCTDYL-EQ 280

Query: 294 A 294
           A
Sbjct: 281 A 281


>gi|221200358|ref|ZP_03573400.1| putative choline sulfate-utilization transcription factor
           [Burkholderia multivorans CGD2M]
 gi|221206037|ref|ZP_03579051.1| putative choline sulfate-utilization transcription factor
           [Burkholderia multivorans CGD2]
 gi|221174049|gb|EEE06482.1| putative choline sulfate-utilization transcription factor
           [Burkholderia multivorans CGD2]
 gi|221179699|gb|EEE12104.1| putative choline sulfate-utilization transcription factor
           [Burkholderia multivorans CGD2M]
          Length = 317

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 109/289 (37%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 18  QALRAFESAARLASFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGVTLTADGEC 77

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 78  LYEAVRLSLDTLRGATATLRARRE--HGTLTIVTDFGFATYWLMPRLAGLKRVMPDVDVR 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+AD AI        S    R L    +    +P +          + 
Sbjct: 136 VVTS-QDYDAQRDHADIAILFGDGHWPSCTAAR-LFAESVTPVCSPAFRDAHPHVSRPEH 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    +           +     +  NSY  ++   +LG G+AL  
Sbjct: 194 LAALPLLHVQPTRPERWLSWAGWFDAHGLDAQAAARGVTFNSYALVIHAALLGEGVALGW 253

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +      L+++++  +  S   +   P           FR ++ 
Sbjct: 254 SPLVDELVAAGQLMKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 302


>gi|330809314|ref|YP_004353776.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377422|gb|AEA68772.1| Putative Transcriptional regulator, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 131/294 (44%), Gaps = 9/294 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
            ++ +F+ +++  S   AA++L++S  ++ R I+ LE  +G++L  R  RG+ LTE G  
Sbjct: 5   HEMLMFHALSQCPSLASAAQRLNVSGPTVMRAIARLEARLGVQLLSRSTRGVVLTEAGVG 64

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                S + + ++  +   +   V+  G L I   +   + ++   L  ++  YP+I++ 
Sbjct: 65  FMADCSRILNAIDEAEASAKGWHVQAQGNLTILLPLLFSRYVMAPVLAGYMDQYPEIRVF 124

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
               ++  ++  +  D A+ +   + + SLI R + ++     A+P YL    EP+  Q+
Sbjct: 125 AHYHDRFPNMHEEGLDVAVLVGN-LPNCSLIARPVGSVRSLVCASPGYLAIHGEPVVPQD 183

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL- 244
           L  H LI            F   A+  +       + LQ     +        +G+    
Sbjct: 184 LHNHRLIATQANQDWVQWPFQQQASGLKARTRLSCATLQAAIDAAAHG-----AGLMRCL 238

Query: 245 --PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             P Y   ++  L R+++    PS  V+  Y E  K   ++++F ++I    R+
Sbjct: 239 NYPLYDYLNSGRLRRVLQPYEPPSIPVHVVYRERRKAPMRVRSFVDYIVEHLRE 292


>gi|330821713|ref|YP_004350575.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
 gi|327373708|gb|AEA65063.1| transcriptional regulator, LysR family [Burkholderia gladioli BSR3]
          Length = 301

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 122/294 (41%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
              +++L ++  V  +GS T AAE+L + ++++ + +  LE E+G  L  R  R + +TE
Sbjct: 6   KLSFEQLLIYIAVVETGSLTRAAERLGIGKTAVGKHVQRLEDELGTTLIARTTRRIHVTE 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+        +    +     +  ++    G LR+A +++    +L   L      +P+
Sbjct: 66  AGASFFEAARRLAELADEAVSSVNPAAETLRGTLRVAASVEFSAIVLAPVLAAMREAHPE 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+++  ++ ID+  +  D AIRL + +  SSL    +        A+P +L   R P 
Sbjct: 126 LRIEMVSGDRFIDMLAEGVDVAIRLGE-LADSSLRAVTVGKYEKWLVASPAWLARHRLPG 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + E      +    L                 +       L  ++  +       G+G+
Sbjct: 185 DVAEAAGLPFVGLSVLAHPL--RCQLRKAGGETLVLDFAPGLLADTMYACRAAAAEGAGL 242

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A LPD+ V  +     LVR+  D   P+  ++   P       K++A  + +  
Sbjct: 243 AWLPDFTVHGDIAAGRLVRVHADWAGPAMAMHALLPPGRHTPPKVRALIDRLKA 296


>gi|15890564|ref|NP_356236.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15158811|gb|AAK89021.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 306

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 127/296 (42%), Gaps = 14/296 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR GSF+ AA++L L+Q +ISRQ+  LE ++G++LF R ARG++LT +GS  
Sbjct: 14  ALAAFDSVARLGSFSAAADELALTQGAISRQVMSLEEQLGVRLFERGARGVSLTTEGSAY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSG-KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +   L   +    +   K  G  L +A     G   L   + +F+  +P+I I 
Sbjct: 74  ---AKSIAAALGEIRSASLQIMTKTHGNTLNLAMLPTFGTRWLLPRIPDFVANHPEITIN 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                   D   +  D AI + +           L+   +    +P +L         ++
Sbjct: 131 FATRIGQFDFEREQLDMAIHIGQA-DWPGAESTFLMHEMVAPVCSPQFLSAHPVEKG-ED 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +    L+       +     +W  ++   +  P+   ++   + S+ Q C+ G G+AL+P
Sbjct: 189 IAALPLLHMAS---RPGAWGHWFESLGLSLALPQ--GMRFEQFSSVAQACIAGLGVALMP 243

Query: 246 DYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +++ +      LV+  +       + Y   P +  N   +  FR+++  +   ++
Sbjct: 244 LFLIDNELKSKQLVKAFDHQARSPSSYYAVAPLSRANHAPVVLFRDWLVRQVEAYR 299


>gi|127513393|ref|YP_001094590.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126638688|gb|ABO24331.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 309

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 73/315 (23%), Positives = 131/315 (41%), Gaps = 30/315 (9%)

Query: 1   MSFD------WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA 54
           M  +       + LR F   AR  SFT A  +L ++  +IS+QI  LE+ + + LF R  
Sbjct: 1   MKMNQLILPPLNALRAFESAARHLSFTRAGNELFVTHGAISKQIKTLESYLDVSLFNRQH 60

Query: 55  RGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKE 114
           + L+LT +G +  R  S     +     EL+         L I     L  N L   L+E
Sbjct: 61  KQLSLTPEGERYLRHISSALQSISQATEELRSQPGIAQ-ALSINVLPSLTINWLIPRLEE 119

Query: 115 FLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL 174
           F   +P + + L + +  +D   D  D AIR    ++ +     KL+   +    AP   
Sbjct: 120 FKARHPHLYVDLSIGDFQVDFKRDKYDVAIR-SATVRPTHCHVLKLMDEDLCLVCAPQL- 177

Query: 175 KNCREPLSIQELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI 231
              ++  S+Q++++  L+   T  +L P   E      T D+ +G        +  +  +
Sbjct: 178 --AKQIDSLQDINRQTLLKHTTRPELWPLWAEKVGLKLTTDKMLG--------MEHFYML 227

Query: 232 MQYCVLGSGIALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYP-----EALKNTGKL 283
            Q  V G G+AL+P + ++       LV  +    T  +  Y   P     +  +   K+
Sbjct: 228 SQAAVSGMGLALIPRFFIEKELAEDSLVIPLATQFTSPYAYYVLTPNLPPSKQSERPLKV 287

Query: 284 KAFRNFIFLKARDWK 298
           +AF +++      ++
Sbjct: 288 QAFIDWLLEIFAPYR 302


>gi|323516185|gb|ADX90566.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
          Length = 293

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 138/298 (46%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L+ F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLQFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L     ++    E   +++++      G++RI T    G   L   L EF + YP
Sbjct: 61  PEGMALVPRVEQM----EQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQYP 116

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL      
Sbjct: 117 LLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKIYGSQNYLAQNPPI 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H  + + D +    E +         +     +  + +S L+       G+G
Sbjct: 176 RRLEDLTQHRFVNYIDDLVYSPELY-----CLERLPLKLNANFRSSSILAQQIAVSAGAG 230

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +A+LP ++  D P L  ++E  +  + T +      L++  ++K   +++  +A  ++
Sbjct: 231 LAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWDYLRKQADKYQ 288


>gi|289064127|gb|ADC80464.1| putative transcriptional regulator (LysR family) [Comamonas
           testosteroni]
          Length = 356

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 126/299 (42%), Gaps = 8/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ + + LR+F V A S SF  AA +L  S   ++R I  LE   G  LF+R  R + ++
Sbjct: 56  MNKEIELLRIFRVAAESSSFRDAAVRLSTSPQGVTRAIQQLEQHYGEVLFHRSTRQVRIS 115

Query: 61  EQGSKLHRVTSEVYHKLETTQIEL-QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
             G  L         + E       ++     SG +RI   + LG   +   L+     +
Sbjct: 116 AFGEGLLDQVRPALERFEELWRVPGRDEQTSLSGTVRITAPLSLGTRAVLPALERVAARH 175

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + + L ++  +   +  D  +RL   ++ S  + RK   +     AAPH ++    
Sbjct: 176 PAITLDVRLSDRISNTVEEGIDVGVRLGF-MRDSRFVARKAADMKFPIVAAPHLIRKVGV 234

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +I  L +    T   +       + W     R    P  + + V++    +   + G 
Sbjct: 235 PDTIDALSRLP--TTASMDLNTGRPWPWYFKAGRQ-WTPIAAAIVVDNADMELGAALAGI 291

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             A LPDY+V     +  LVR++E   + ++ +Y   P+    +G+++A  + +    +
Sbjct: 292 AFAQLPDYVVAPYIASGKLVRVLEKEESSAWGLYVYRPQRGPVSGRVRAVFDEMLAAVK 350


>gi|260466513|ref|ZP_05812702.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029662|gb|EEW30949.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 310

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 132/299 (44%), Gaps = 10/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSF---THAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLT 58
               D+L      AR+GS    T AA  L +S S++S+ I  LE  +G+ LF R  R LT
Sbjct: 4   HIALDRLTGIIAFARAGSLGSYTAAARALSISPSAVSKSIQRLERHLGLSLFTRTTRSLT 63

Query: 59  LTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
            T +G  LH     +  + E  +     +  +PSG LR+A ++ +G +L+   L  F  L
Sbjct: 64  FTPEGRDLHERALRLLREAEEIEQAAMTARSEPSGTLRVAASLPIGLHLIAPALPAFRRL 123

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +P++ + L L ++ +D+  +  D AIR+   +  + L+ RKL    +  +A+P YL+   
Sbjct: 124 HPNLVVDLRLGDQTVDMIEEGIDVAIRIGD-LADTRLLSRKLAPHRLCCFASPAYLEERG 182

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATV-DRPIGEPRISCLQVNSYLSIMQYCVL 237
            P    +L  H+ +          + F W   + D  I     + +  ++  +++     
Sbjct: 183 TPTHPDDLVGHDTVNL--RYQSTGQTFRWPFRIGDHEIEIVPNAGVVADASDAVLIMLAA 240

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +   ++        +LV ++         V   +P + +    ++AF   +   
Sbjct: 241 GGGIGIGASFMAAPYVKRGDLVPVLSTFAVERNNVTVLWPASRRANPAVRAFLTMLDAA 299


>gi|163749519|ref|ZP_02156767.1| glycine cleavage system transcriptional activator, putative
           [Shewanella benthica KT99]
 gi|161330928|gb|EDQ01855.1| glycine cleavage system transcriptional activator, putative
           [Shewanella benthica KT99]
          Length = 303

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 111/290 (38%), Gaps = 11/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + ++ F   AR  SFT AAE+L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLSLKLFRRKNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++ +L      L   S    G L ++ +       L   L +F    PDI +
Sbjct: 68  GYFLDIKDIFVQLADATDRLLARSA--IGSLTVSMSPSFAIQWLVPILAKFSEKNPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D D   D  D AI   +      L   KL    +    +P  L   +      
Sbjct: 126 RIKAVDDDNDALSDDVDVAIFYGQG-NWVGLHADKLKNEVLIPVCSPLLLNGPKPLDKPS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+          +   W               +  +    ++Q    G G+AL 
Sbjct: 185 DLKHHTLLH----DTNRHDWQAWFRQCGINDINVNQGPM-FSHSSLVLQAAAHGQGVALG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              + + +     LV    +V+      Y    +     GK+ AFR ++ 
Sbjct: 240 YSVLARPDIKAGRLVCPFSEVLVSKNAYYLVCQQNHAEVGKIAAFREWML 289


>gi|163796986|ref|ZP_02190942.1| fumarate hydratase [alpha proteobacterium BAL199]
 gi|159177733|gb|EDP62284.1| fumarate hydratase [alpha proteobacterium BAL199]
          Length = 305

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 111/300 (37%), Gaps = 10/300 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M     + LR F   AR GS T AAE+LH++ S++  QI  LE E+G  L  R+  GL  
Sbjct: 1   MRLPSLNALRAFEAAARLGSLTRAAEELHVTPSAVRHQIRALEEEIGRPLLRRNGSGLMP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE  +         +  L      L+  +  P   L ++         L   L+ F   +
Sbjct: 61  TEAANGSLGHLRRAFDALADANRSLRHPATAP--TLTVSAVPSFVSAWLIPRLEGFQRRF 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + +Q+  +    D   +  D AIR         L + +L +       AP YL +   
Sbjct: 119 PGVTVQIGTNALPTDFHREGVDLAIRYGLGG-YPGLFECRLFSERYFPVCAP-YLLDGPT 176

Query: 180 PLS-IQELDKHNLITFGDLIPKCME-DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           PL+   +L +H L+    L         +WL            +       +   Q  + 
Sbjct: 177 PLAEPGDLARHTLLHSSVLPRSGWPVWRDWLDAAGVLAQVDPDAGTHYTMSMFAYQAAMA 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             G+AL    +  D      LV+  +  +  +F  +   P   +    + AF  ++   A
Sbjct: 237 CQGVALGTTVLSMDMLAAGYLVKPFDMELPTAFGYHIVCPPESRERPLVAAFIEWLLEAA 296


>gi|32469916|ref|NP_863090.1| putative LysR-type transcriptional regulator [Pseudomonas putida]
 gi|38638520|ref|NP_943106.1| transcriptional regulator [Pseudomonas sp. ND6]
 gi|237797149|ref|YP_002887439.1| putative LysR-type transcriptional regulator [Pseudomonas
           fluorescens]
 gi|28976078|gb|AAO64292.1| putative LysR-type transcriptional regulator [Pseudomonas putida]
 gi|34335308|gb|AAP44206.1| transcriptional regulator [Pseudomonas sp. ND6]
 gi|229424286|gb|ACQ63510.1| putative LysR-type transcriptional regulator [Pseudomonas
           fluorescens]
          Length = 304

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 115/300 (38%), Gaps = 11/300 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F   AR  SF+ AA +LH++ +++ + +  LE  +G  LF R   G   L  T+
Sbjct: 7   LNALRAFEASARHQSFSAAAAELHVTPAAVGQLVRTLEDWLGTHLFVRSTSGKARLIPTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
              +        + +L      LQE     S  L +A +       L   +  F  + PD
Sbjct: 67  AAERALPDIRAGFDRLTLGMERLQE--CSVSCVLTVAVSPAFAVKWLLPRIDRFQAICPD 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L  + K +D      D  +R     +   L   K++   ++   +P   +      
Sbjct: 125 TDVRLDTNLKPVDFVAQQVDIGVRYGTG-KWPGLAAEKMMDEEIYPVCSPQLRRERFCLQ 183

Query: 182 SIQELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +L +  LI             +              +  +++N+  +++Q    G G
Sbjct: 184 KPNDLVREILIHDLSMDNHSGFPTWESWMQQAGVTETTTLRGMKINNSAAVLQAAAEGHG 243

Query: 241 IALLPDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +AL    + +D+     L+R+  ++ +      Y  Y     +  +L  FR+++  +A +
Sbjct: 244 VALARGVMARDDLASGRLIRLFPEISVASDLAYYVVYRPECVSLPRLTTFRDWLLAEAAE 303


>gi|254505863|ref|ZP_05118008.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
 gi|219551086|gb|EED28066.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus 16]
          Length = 295

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 133/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +++ + S+IS+++  LE  +G++L  R  R +T TE
Sbjct: 1   MDWIQSVHSYIRVVDEGSFNGAARKMNTTSSAISKRVHWLEERIGVQLLKRTTRTVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +        + ++   E +  S  P+G L+I  T+ +G   L   L +FL +YPD
Sbjct: 61  AGALFYERAKMQLEEWQSIVDETRSVSQSPAGLLKIGATLAVGSKFLVQYLNDFLRMYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQLI       +     D  I R  + + S S     L       YA+P Y++   EP
Sbjct: 121 IRIQLITT-TPGQLPELSLDLFISRELEQLNSLSFKATPLFEHKAGFYASPSYIETHGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I+EL  HN + +G+   + +       T+ +             +  ++        G
Sbjct: 180 KTIEELTSHNALIWGERPQREI-------TLTQGKRIMLSGNFATTNPEAMFYAAKNSMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I +  D ++KD+     L RI+ ++     TVY  YP+      + K F +++  + 
Sbjct: 233 ILVTNDVMIKDDLNNGTLRRILPNITADEATVYAYYPKLDYQHTRTKLFLDYLKERL 289


>gi|186470685|ref|YP_001862003.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196994|gb|ACC74957.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 295

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 113/289 (39%), Gaps = 10/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F    R GSF  AA +LH++  ++S+Q+  LE  +G+ LF R  R +TLT    
Sbjct: 8   LNALRAFEAAGRLGSFKEAAAELHVTHGAVSQQVRLLEAWLGVSLFERRNRRVTLTHAAK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   ++ +L              +  L +          L   L  F   +PD+++
Sbjct: 68  AYLEEVGPLFEQLSQATARY-GVPDTVARTLSVNAPATFTLRWLVPRLARFRAAHPDVEV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   N  ++   +  D  IR   P        R  ++       +P  L+      S  
Sbjct: 127 KVETSNGPLESLKENYDIVIR-GGPDTFYGYAMRSFLSEERLPVCSPALLQRV-PLRSPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+    L P+   D  WLA+   P   P  + L  + +   +Q  + G G+A+ 
Sbjct: 185 DLRQHTLLHTSSL-PRLWPD--WLASAQIPAMRP-AATLTFDHFYLTLQAAIDGIGVAMG 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V D+     LV        PS +     P+       +  FR ++
Sbjct: 241 PTALVSDDLAAGRLVAPFSAPRLPSRSYCSYVPDEKSGDELVGLFRTWL 289


>gi|149188771|ref|ZP_01867062.1| hypothetical transcriptional regulator [Vibrio shilonii AK1]
 gi|148837432|gb|EDL54378.1| hypothetical transcriptional regulator [Vibrio shilonii AK1]
          Length = 300

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 120/296 (40%), Gaps = 12/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            DK+  F  V RSGS + AA + ++S S+ SR +  LE   G  L  R  R L  T+ G 
Sbjct: 2   LDKMAFFVYVIRSGSISSAARRFNISVSAGSRWLQELENHFGTTLCRRSNRLLEATQAGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    S +    E    +L++   +    + I  T     + L   + ++   +PD+  
Sbjct: 62  TLFEEFSPLVDSAERISRKLEDYQSQEKRHIDIVCTPVYANHYLMDMIAQYSKAHPDVTF 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-----SSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + +    +D     +D  I      Q        L++R+L+       A+P YL++   
Sbjct: 122 NINVTPWALD-HASTSDLMISANASFQGYREKDLLLVKRELMQCPFIVVASPQYLESHNL 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L +H  +    L       F   A     I       ++VN    +++  + G 
Sbjct: 181 PSHPSDLAQHPCLIATTLTGSNDWIFRQQAE---NIILKVPKTVEVNDSDLLLRGALNGI 237

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           GIA LP+++ +   DN  L+ ++ D  T  +++   Y      +     F++F+  
Sbjct: 238 GIAYLPEFVARSYIDNGKLIALLPDYQTSIWSLNLYYHSPQTASPTATKFKDFLLA 293


>gi|302186352|ref|ZP_07263025.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 274

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 118/272 (43%), Gaps = 11/272 (4%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +S + +S++I  LE  +G+ L +R  R +++TE G +++     +   ++    E+    
Sbjct: 1   MSAAYVSKRIRLLEQGMGVVLLHRSTRHVSITEDGERVYEWARGMLDSVQQMGDEVAALH 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
            +PSG LR+ ++   G+  +   L E    YP + I+L + ++ +D+  +  D  IR+  
Sbjct: 61  GEPSGLLRVVSSQGFGRRFVAPALSELAARYPKLDIRLDIQDRLVDLVEEGVDLDIRVGN 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            I +  L  R L +      A+P YL     PL++ EL  H+ +   +           L
Sbjct: 121 EI-APQLRARHLASNWRVLCASPGYLNLHGTPLNLGELANHDCLVIKERDRPFGIWH--L 177

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITP 265
                         L  N      Q+C+ G G+ L   + V+       LV+++ D    
Sbjct: 178 NGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVLLRSLWDVRTDLAEGRLVQVLPDYRQD 237

Query: 266 SFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  ++  +   L ++ K++    F+    RD+
Sbjct: 238 A-DIWAVHTSPLMSSAKVRVTVEFL----RDY 264


>gi|170698300|ref|ZP_02889376.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170136791|gb|EDT05043.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 327

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 118/293 (40%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT  G 
Sbjct: 29  FELMETFVRIVEAGSLSAAAAQLHTTQPTISRRLQALERSLGMRLLQRTTHAMRLTVDGE 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+       + +L+ +  +P G LR+A     GQ    G L  FL  YP + +
Sbjct: 89  RCFTRAKELLTNWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVGPLARFLRDYPRVSV 148

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D      DCAI++ +P    S++  +L  +     AAP  L     P    
Sbjct: 149 EWLLQDEVRDFVGSGIDCAIQVGEP-TDPSVVAIRLSKVPRFVVAAPSVLNGADVPADPD 207

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     +         +   + +    R I       +   +  ++    +LG G  + 
Sbjct: 208 ALAALPWLALRTYYRTELTLTHTVTGDTRRIA--MRPRITTANLYALRSAALLGVGACVG 265

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +++ D+     LV +  D       VY  YP A     +L  F   +    
Sbjct: 266 SSWMLADHLARGELVHLAPDWYAAPLPVYMTYPHAQFYPSRLVRFVAMMREAV 318


>gi|121594859|ref|YP_986755.1| LysR family transcriptional regulator [Acidovorax sp. JS42]
 gi|120606939|gb|ABM42679.1| transcriptional regulator, LysR family [Acidovorax sp. JS42]
          Length = 305

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 120/293 (40%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   AR  S + AAE+LHL+QS++SRQ+  LE ++G  LF R  + + LT+ G 
Sbjct: 10  LADLLAFEAAARHASISRAAEELHLTQSAVSRQVRQLEAQLGQALFTRVRQRVVLTDAGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   V  +L     +         G L +A    LG   L   L  F  L+P++ +
Sbjct: 70  LYAADVRAVLQQLGAATQKAMAL-ADGGGLLHLAVLPTLGARWLVPRLPAFAALHPELTV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L    +  D + +  D AI    P   +  +   L+   +    +P      R   +  
Sbjct: 129 NLSARGEPFDFAQEPFDAAIHYGAP-HWAGAVCDYLMHEEVVPVCSPALRTRHR-IETPA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++    L+       + M   +W      P  +  +   +   +  I Q  + G G+ALL
Sbjct: 187 DVAGLTLLH---QTTRPMLWADWFEQEGVPAPQA-LRGPRFEQFAMIAQAAISGLGVALL 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P +++++   +  LV +   V+T S   Y   P A   +  +KA R ++   A
Sbjct: 243 PRFLMEEELASGALVELPGGVLTSSDAYYLVVPLARAESAGVKAIRAWLREVA 295


>gi|167590367|ref|ZP_02382755.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 288

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 135/287 (47%), Gaps = 8/287 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  + R  +   AA  L + Q+++ R+++ LE  +G  LF R + G  LT  
Sbjct: 1   MNWDDARIFVALHRERTLRAAARALDIDQATVGRRLAALEHALGATLFLRTSAGYELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +           Q    + +G+++++TT  L Q  +   ++     +PD+
Sbjct: 61  GRIAIRAAEAMEQSAHDLVRHTQGVDKRLAGEVKLSTTDALAQEYVMPAIERLHAKHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L    + ++++   AD AIR  KP ++  L+ R+L +  +  +A+P Y++   EP+ 
Sbjct: 121 SVLLDTTTQVLNLAKREADIAIRTVKP-RNPDLLARRLASWEVGLFASPDYVRRHGEPVP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +    H+L+ +     K        + V  P+ + RI   ++N+ L++      G G+ 
Sbjct: 180 GERFAGHDLVVYQPHFAKARVP----SFVGEPLADGRIVA-RLNTNLTLRAALKAGLGLC 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRN 288
            +P  + + +  LVR+  D    + + ++    + L++T +++   +
Sbjct: 235 EIPVPMGERDG-LVRVWPDRANDAQYEIWLVTHQDLRHTARIRVTID 280


>gi|21230647|ref|NP_636564.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769358|ref|YP_244120.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21112232|gb|AAM40488.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574690|gb|AAY50100.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 335

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 133/311 (42%), Gaps = 17/311 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     +R F     +GS    A++L +S +++S+ I+ LE  +G++L +R  R L LT
Sbjct: 1   MNI-LQSIRSFVSTVDAGSIAGGAKRLGVSPAAVSQNIARLEQHLGVRLLHRTTRSLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   LE  +  +      P+G+LR+A+T    +++L   L      YP
Sbjct: 60  ERGALYVEQVRQIERDLERARQLVAGPQQAPAGRLRVASTAAFARHVLAPMLPSLRQRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L+  ++ +  + +  D ++R+   ++   L+ R +  +     AAP YL+ C  P
Sbjct: 120 RLEIELLCTDRVVQHAQESVDVSLRIEAQLED-GLVARHIANVPFVVCAAPAYLQRCGAP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +  EL  H+ +      P       W    D    +P +   L  +   ++      G 
Sbjct: 179 QTPDELKYHDCLLL--RYPVDGRYLRWNFIRDGVRFQPDLGRALVSDDVDALAAMAAAGG 236

Query: 240 GIALLPDYIVKD---NPNLVRIM--------EDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GI  L  ++V+       L  +                  +Y C  +    T K++AF  
Sbjct: 237 GITRLGAFVVQPYLLRGQLQPLFVARTGGTATPFALEPLRLYLCVADRHDFTPKVRAFME 296

Query: 289 FIFLKAR-DWK 298
            +  +   DW+
Sbjct: 297 HVLERLPDDWR 307


>gi|254249096|ref|ZP_04942416.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
 gi|124875597|gb|EAY65587.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
          Length = 369

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 129/299 (43%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F  V  SGSF  AA +L +++S++++ ++ LE  +G +L  R  R L LT
Sbjct: 61  MDERLRGVAEFVDVVESGSFAAAALRLGMTRSAVAKIVARLELRLGARLLQRTTRQLGLT 120

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +     +  +L   +  L     +P+G++R++  +  G+  +   ++  +  +P
Sbjct: 121 DEGLVYYEQCRRLLAELGEAEAALDAGRREPAGRVRVSVPVLFGRQCVAPVVRRLVERHP 180

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I +   ++  D+  D  D A+R+ +   +S+L+ RKL    M   A+P YL     P
Sbjct: 181 RLEIDMSFSDRVADLVNDGFDLAVRIGELADTSALVGRKLGVQRMGICASPAYLVRHGRP 240

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             + EL  H  I +   G   P  +   +      R  G  R   LQ  +  +     + 
Sbjct: 241 SGLDELASHVGIAYSRGGQPAPWRVIGADGAVHDHRATGRLRFDDLQAIADAAAAGAGLA 300

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 LP +++     +  L  +M+        V+   P A     K++A  + +  +
Sbjct: 301 -----WLPCWLMAPYLRDGRLALVMDSNSVSGAEVFAVRPAARHVPSKVRAVVDALVDE 354


>gi|254464242|ref|ZP_05077653.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
 gi|206685150|gb|EDZ45632.1| transcriptional regulator, LysR family [Rhodobacterales bacterium
           Y4I]
          Length = 292

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 122/296 (41%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AA+ L +  +++ R I  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+      SG+L + +   L   ++   LK+F  ++P + 
Sbjct: 63  QDLLRVAQATDDQFSQLVGRLKGQGDDVSGELVVTSLASLAP-MMVPALKQFQDMHPGLI 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+ +   +   +    A  A+R          + +  +   +  YAA  Y         +
Sbjct: 122 IRYLTGERLFRLEYGEAHVAVRAGNAPDQPDNVVQPFMKQQVGLYAAKTYADKYGLLKGV 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++  H  +   D   +        A   R          +     ++      G+GI  
Sbjct: 182 EDIPNHRFVGQDDEGSRAP-----FARWLRANAPAEAIAFRCTDGATLKAAVRSGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           +  +  +  P+LV +M         ++      L  T K++AF  F+  + +DW+ 
Sbjct: 237 MAAWEARQEPDLVEMMAPQEDWEGALWLVTHVDLHRTTKVQAFLKFLKEQVKDWQL 292


>gi|148360176|ref|YP_001251383.1| LysR family transporter transcriptional regulator [Legionella
           pneumophila str. Corby]
 gi|148281949|gb|ABQ56037.1| transcriptional regulator, LysR family [Legionella pneumophila str.
           Corby]
          Length = 302

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 132/297 (44%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     L+ F       SF+ AA++L++S S +S+QI+ LE E+ + L  R    LT+T
Sbjct: 1   MNI-LSCLKGFITTVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLIRSTTRLTVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L+    +++ +LE  ++      ++ +G +R+  T+      L     +F+  YP
Sbjct: 60  DSGHRLYEKALQLFEQLEAVKVIATPDQLELNGVIRLYLTVTPAIPYLTKLSIQFMRQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ +I+ +   ++     D AI     ++ S L+ ++L +I    +A+P Y+     P
Sbjct: 120 KIEVDIIVGSDTKELYSSTFDLAISF-DDVKHSKLVCKRLFSIQRKVFASPGYITQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ EL KHN +       +    FN                 + N+   + Q  V   G
Sbjct: 179 QTLDELPKHNCLINTLYGLQNKWVFN-------KKIIHVSGNFKSNNAGVLKQAAVADVG 231

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   P + V +      L+ ++ +  +P   +Y   P+   +  K+    NF   KA
Sbjct: 232 ILWAPYFSVYEEIKNEALIPVLPNESSPDINLYAICPKPTVDEQKINLLLNFFCEKA 288


>gi|66044683|ref|YP_234524.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255390|gb|AAY36486.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
          Length = 311

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 114/286 (39%), Gaps = 11/286 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
                L++F    + GSF++AA +  L    +S  I  LE E+GI+LF R  R L LT +
Sbjct: 2   MRLGDLKLFVRTVKLGSFSNAAREADLLPGQVSAAIKRLEHELGIRLFARSTRSLRLTGE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G             L   Q  L     +  G L++A   DLG+N+L     +F   +P +
Sbjct: 62  GETYLPSAITALDALAQGQERLHGEGNQLQGILQVAAPSDLGRNVLLSCFSQFRKEHPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCREPL 181
            ++L++ ++  ++  D  D AIR     + +S ++R L         A+P YL     P 
Sbjct: 122 TLRLLISDRLANVFRDPVDIAIRYGSA-EDASYVERPLAAWNRRVLVASPAYLSRHGRPA 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +++L  H  + +       + +  +          P    L  +    +  + + G GI
Sbjct: 181 MLEDLSHHCCLLY------MLNEHVYDNWKIAQQKIPVKGLLVSDDADVVRLWAIAGEGI 234

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           A      V+++     L  ++         +    P   + +  ++
Sbjct: 235 AYKSWLDVREDVLSGRLEILLGQHPGELSPLNLVCPHRKQYSPAVR 280


>gi|145631243|ref|ZP_01787016.1| DNA-dependent helicase II [Haemophilus influenzae R3021]
 gi|144983170|gb|EDJ90665.1| DNA-dependent helicase II [Haemophilus influenzae R3021]
          Length = 297

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +GI+LF R  R L LTE G 
Sbjct: 8   LNSLKSFESAARYLSFTKAADELCVTQAAVSHQIKLLEEFLGIELFKRKNRSLELTELGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L      L      P   L I+     G   L  +L EF  LYP I++
Sbjct: 68  AYFVDINKILRRLNEATERLLMLKADPH--LNISVPQTFGIQWLVPHLSEFNQLYPQIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI         +L   +L   ++   A+P  L      +  +
Sbjct: 126 RLTGVDQDEGLLNKEIDLAIYYGLG-NWQNLQVDRLCEENLLILASPELLAE-DPIIQPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH LI             N L   D  I +  +     +     +Q  + G GI L 
Sbjct: 184 DLKKHTLIHI-HTCDNWQAMANHLQLDDLNIQQGPL----FSHTFMALQAAIHGQGIVLA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +     +N +L  ++   +    + Y        +  K++AFR +I 
Sbjct: 239 NRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQAFRQWII 288


>gi|75760891|ref|ZP_00740903.1| Transcriptional regulators, LysR family [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218897372|ref|YP_002445783.1| transcriptional regulator, LysR family [Bacillus cereus G9842]
 gi|228901018|ref|ZP_04065229.1| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 4222]
 gi|228965395|ref|ZP_04126485.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|74491626|gb|EAO54830.1| Transcriptional regulators, LysR family [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218541706|gb|ACK94100.1| transcriptional regulator, LysR family [Bacillus cereus G9842]
 gi|228794293|gb|EEM41809.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228858615|gb|EEN03064.1| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 4222]
          Length = 300

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 135/305 (44%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   ISIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L      ++H++E  +  LQ+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHCKTIFHEVEQARSALQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISIPLYKSDLTLVVPTGHRLAK 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 181 RNHVSITELQNYPLI----LLPKNFFLTELITSHCQKFNFRPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP   +   Y +        + F   + + 
Sbjct: 237 GMGITVLPQPYIDFLQNKNIQAIKI--ENPTPIIEIGLIYRKDKYMCAATREFIEQLQIT 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|325274365|ref|ZP_08140460.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324100499|gb|EGB98250.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 316

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 128/290 (44%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-ARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 10  ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  F+  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSSVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +    
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQGYLDSHAPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L +H  I++ D +    E       +           L+  S ++     + G G
Sbjct: 189 RQVADLARHPFISYVDDLAFSSELLYLANLIPGATAH-----LRSTSVIAQYTAALQGRG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +P LV ++ + I  +   +    E L+   ++    ++I
Sbjct: 244 LAILPCFLAAQDPRLVTVLPEDIEVTRQFWMYCREDLRKLKRITLLWDYI 293


>gi|260770205|ref|ZP_05879138.1| hypothetical transcription regulator [Vibrio furnissii CIP 102972]
 gi|260615543|gb|EEX40729.1| hypothetical transcription regulator [Vibrio furnissii CIP 102972]
          Length = 327

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 135/298 (45%), Gaps = 13/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            DK+  F VV ++GSF  AA++  +S ++ SR +  LE  + ++L  R  R L  T+ G 
Sbjct: 13  LDKILFFCVVMQTGSFKAAAQRQGISAAAGSRWVKELEETLSVELIKRSTRQLAATQAGQ 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   + +  +++T    +Q  S +  G++R+++T    +  L   + E++ L+P +  
Sbjct: 73  LLYERFAPMIGEIDTLCEAVQNLSEQQQGEIRLSSTPLFARQYLTKIVAEYMALHPKVHF 132

Query: 125 QLILDNKDIDISMDYADCAIRL-----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++ ++  + D      D A R       +P++ S LI+++L++  ++  A+  YL     
Sbjct: 133 KIFIEAGEFDPLT--IDFAFRALATYDGEPVEDSLLIRKRLLSEPLYLCASERYLTEAGT 190

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + Q L  H  +    L+      F      ++P        L+ ++   ++      +
Sbjct: 191 PTTPQALKAHRCLYARTLLGGNRWCFE---RDEQPEIVTIRDALECDNSEMLLNLAQQSA 247

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIA LP  +V+    +  L  +M      SF ++  Y        +  +F+ ++  + 
Sbjct: 248 GIAYLPHSLVEPCLRSGELHHVMPQYRCASFDIFLYYRPRHPMPERCASFKRYLLERV 305


>gi|148547130|ref|YP_001267232.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511188|gb|ABQ78048.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 301

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 126/293 (43%), Gaps = 14/293 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D   +++ F  VA   SF  AA  L  S S+++R +  LE   G KL  R+A  +TL
Sbjct: 1   MALDMLREIQAFVSVAHKRSFVAAARALGRSPSAVTRAVQTLEDNAGSKLLNRNANAVTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G +L      +         EL   S    G +R A    LG+++L   L EF   +
Sbjct: 61  TEAGERLLPHAERLLDVQRDAADELAALSGNAQGWIRFAAPQLLGEHVLPQVLAEFSRRH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +   ++ +D      D  +R   P QSS LI   L     H YA+P YL     
Sbjct: 121 PQVTLDVQYSDEALDPLQGKFDFVVRGAFP-QSSELIGYPLWPYQRHLYASPAYLALAGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++LD H LI      P+ ++ +++          PR   L++ S  ++    + G+
Sbjct: 180 PQHPEDLDGHTLILH--TAPRILKAWHFCHDDQITSLRPR-PRLRLGSGGAVYHSTLAGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLK 284
           GIA L  +  +       LVR+       S +     ++  YP   +   +++
Sbjct: 237 GIARLAAWAGEAQVKAGRLVRVCPQYRLTSSSGQDPQMHAVYPAG-ELPTRVR 288


>gi|187479279|ref|YP_787304.1| LysR family transcriptional regulator [Bordetella avium 197N]
 gi|115423866|emb|CAJ50417.1| LysR-family transcriptional regulator [Bordetella avium 197N]
          Length = 311

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 138/296 (46%), Gaps = 15/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VA+  SF+ AA+ LH+  S++SR+IS LE  +G++L  R+ R L LT+ GS
Sbjct: 8   LNDIALFVEVAKRKSFSLAAKALHMPTSTLSRRISQLERAIGLRLINRNTRRLELTDAGS 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R    +  +    Q +L+  S KP G+L I+    L   LL  +L+ F+  YPD++ 
Sbjct: 68  IYLRRCQGLIDEARLAQEQLRSLSSKPKGRLSISMPYSLAIWLLPNSLRAFMDAYPDLEC 127

Query: 125 QLILDNKDI-DISMDYADCAIRLR----KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +  L+ K I D   D  D  +R      +    +S +  +++ +  + YA+  YL+    
Sbjct: 128 EFDLNLKSIADSHGDPFDIMLRFGCDSQELTDDNSPLVDEIIRLEGYLYASCEYLERYGM 187

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +  +L +H  +                   +R    P    L  N+   +     LG 
Sbjct: 188 PKTPADLSQHQCLRTAIDEAHSSWTLTQGTQTER---IPVSGHLAGNNISVMGSLSGLGM 244

Query: 240 GIALLP-----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA LP     D +++ +  L R++ D      +++  +P+ +    K +AF ++I
Sbjct: 245 GIARLPYCQALDAVIEQH-ALKRVLPDWQVNPISIFGHFPQQI-LPAKTRAFMDYI 298


>gi|78063891|ref|YP_373799.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971776|gb|ABB13155.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 297

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 127/288 (44%), Gaps = 8/288 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +WD  RVF  + R  +   AA+ L + Q+++ R+++ LE  +G  LF R ++G   T 
Sbjct: 7   AMNWDDARVFLAIHRERTLRRAAQTLGVDQATVGRRLAQLEHMLGATLFLRSSKGYLTTP 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    R    +           Q    + +G+++I TT  L    +  ++      +PD
Sbjct: 67  VGELALRAAEAMEQHAHELVRLTQGVDRRLAGEVKITTTDALALEFVMPSIARLHAKHPD 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L    + ++++   AD A+R  +P  +  L+ R+L    M  +A+  YL+   EP 
Sbjct: 127 VCVSLNTATQVLNLAKREADIAVRTVRP-DNPDLVARRLACWDMGLFASHDYLQRHGEPA 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                  H+L+ +   +    +     A    PI   RI   ++NS L +      G GI
Sbjct: 186 RGSAFAGHDLVVYQPYVDASRKP----AIAGEPIAAGRIVG-RMNSSLMMRAALRSGLGI 240

Query: 242 ALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRN 288
             +P ++ + +  L RI  +      + V+      L++T +++A  +
Sbjct: 241 GEVPVHMGERDG-LARIWPEQTRETPYEVWLVTHRDLRHTARIRATID 287


>gi|170693011|ref|ZP_02884172.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
 gi|170142009|gb|EDT10176.1| transcriptional regulator, LysR family [Burkholderia graminis
           C4D1M]
          Length = 322

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 115/298 (38%), Gaps = 11/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F  V R  S+  AAE+LH++ ++I + I GLE  + I+LF+R   G   L LT+
Sbjct: 25  LNALRAFEAVGRHLSYVAAAEELHVTPAAIGQMIRGLEETLEIELFHRSTSGASRLVLTD 84

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
                       +  L      L+ S  +    + +     L        ++ F   YP 
Sbjct: 85  AARAAMPELQGGFGLLAQAVERLKASKARI--TVTVTVPPALADKWFLHRVERFQRKYPR 142

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             +++ L  K +D   D  D  IR     Q   L    L+        +P  L+      
Sbjct: 143 YDLRIDLSLKLVDFVADRVDAGIRYGTG-QWPDLAATFLMRDEFFPVCSPELLEGEHPLR 201

Query: 182 SIQELDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  +L+ H LI    +   P      +W+              LQ+N   + +   + G+
Sbjct: 202 TPADLNYHPLIHDISMRAAPTFPTWRSWVQKTGNAGRVDCDRGLQINDSAAAIHTAISGN 261

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL    +V+ +     LVR   D  T     Y  + +   N   + AF+ ++  +A
Sbjct: 262 GVALGRTCLVERDIAEGRLVRPFPDAQTCELAYYVVHRKDNGNEPAVVAFKEWLLAEA 319


>gi|33594142|ref|NP_881786.1| LysR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33564216|emb|CAE43505.1| putative LysR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332383557|gb|AEE68404.1| LysR family transcriptional regulator [Bordetella pertussis CS]
          Length = 335

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 127/297 (42%), Gaps = 16/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VA+  SF+ AA  L +  S++SR+I+ LE  +G++L  R+ R L LT+ G+
Sbjct: 29  LNDIALFVEVAKRKSFSLAARALDMPTSTLSRRINQLEKAIGLRLINRNTRRLELTDAGT 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +    + +L+  + +P G+L I+    L   LL  +L  FL  YP+I  
Sbjct: 89  VYLLRCQGLIDETRLAREQLESLTGRPKGRLNISMPYSLAIWLLPTSLGAFLDSYPEIDC 148

Query: 125 QLILD-NKDIDISMDYADCAIRLRK-----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +  L+ N          D  +R  +          + +  +++++  + YA+  YL    
Sbjct: 149 EFDLNLNASATSQGAPFDVILRFGRDSGDDETPDPNTVVDEIISLDSYLYASEDYLARYG 208

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVL 237
           EP    +L +H  +          E  +W            +S     + +S++     L
Sbjct: 209 EPRDPADLGRHECL----RTAIDPEHSHWTLHNGERTERVEVSGHVAGNNISVVGTLAGL 264

Query: 238 GSGIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP       V +  +L R++        ++Y  YP  +   G+ + F +F+
Sbjct: 265 GLGITRLPHCQALDPVIERNSLRRVLPQWRVQPISIYAVYPSPI-LPGRTRVFMDFV 320


>gi|228939566|ref|ZP_04102152.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972418|ref|ZP_04133028.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228787293|gb|EEM35262.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820109|gb|EEM66148.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326940112|gb|AEA16008.1| LysR family transcriptional regulator [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 300

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 136/305 (44%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L T  +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISIPLYTSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP   +   Y +        + F   + + 
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIKI--ENPTPIIEIGLIYRKDKYMCAATREFIEQLKIT 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|52425470|ref|YP_088607.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307522|gb|AAU38022.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 302

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 125/292 (42%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF+ +A  GS   AA +L ++  SIS+ +  LE  +G+ LF R  R + LTE G  L 
Sbjct: 9   LTVFHTIAAEGSIAGAARKLQMASPSISQSLKLLEQHIGLPLFNRTTRKMELTEAGHHLL 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             T +   +L      +Q+ S  P G +R+         +++ +L EF   YPDIQ+++ 
Sbjct: 69  ASTQDAIAQLSVAVESVQDLSGVPKGVVRMTVPHVGYWLIIEPHLAEFCERYPDIQLEIS 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL-VTIHMHAYAAPHYLKNCREPLSIQEL 186
           +++  +DI  +  D  IR    +    ++ +KL     +  YA+  Y +    P  I EL
Sbjct: 129 INDGTVDILKEGFDLGIRFGDKV-DEQMVAKKLTAPFRLGLYASSAYQQQFGLPKKIAEL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H L+ F       +   + L      +     + +  NS +        G  +    +
Sbjct: 188 KNHRLVGFRFATSNRIFPLS-LNDKGEEVSVEMPTPIVANSLIVAKDVIKSGIALGRFFE 246

Query: 247 YIV---KDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++    D    + ++E        +Y  Y +  +  G+++A   F   KA+
Sbjct: 247 PLMSKQADRAAFIPVLEKHWKTFGALYLYYMQHSQKAGRVRAVIEFFTEKAQ 298


>gi|78045600|ref|YP_361775.1| LysR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926178|ref|ZP_08187536.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|78034030|emb|CAJ21675.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543360|gb|EGD14785.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 295

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 133/297 (44%), Gaps = 14/297 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D + L  F +VA +     A+     S++++SR+I+ LE ++G++L  R ARGL LTE
Sbjct: 4   SMDLNALIDFSLVAANQGLGKASRASGRSKATLSRRITELEEQLGVRLVERSARGLKLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L   T     ++       +E    P G+LR+A+ +   Q  +     +F   YP+
Sbjct: 64  AGQQLMERTQVPLSEVAEAMTAAREGLSSPRGRLRVASPVLFSQLAMGHIGADFCAAYPE 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++++ +++ +D+  +  D AIR+  P   S L+ R      +   AAP       + +
Sbjct: 124 ITLEVVAEDRTVDLMEEQFDVAIRI-NPSPDSRLVGRCFAKDRLVVVAAPSIAMPSGDAV 182

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
                          ++    E   W     R + EP I  ++ +S+L +    + G G+
Sbjct: 183 HP----------VPGVVMSSFEPTTWTLDGGRLVLEP-IPRMRFSSFLMVRDAVIAGGGV 231

Query: 242 ALLPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           AL+P  I        ++++   +   +  ++  +        K++AF +FI  +  D
Sbjct: 232 ALIPQSIAWQQLARGQLLQWGTISGVAPALWVLHTSRRLAAPKVRAFVDFICARYPD 288


>gi|218894009|ref|YP_002442878.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218774237|emb|CAW30054.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 312

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 118/295 (40%), Gaps = 14/295 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F  VAR  SFT AAE+L L+QS++S+Q++ LE ++   LF R  + L LT  G   
Sbjct: 12  ALQCFEAVARHLSFTRAAEELSLTQSAMSKQVAQLEEQLQHALFRRVRKRLQLTPAGELY 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  ++E        S    +  LR+AT    G   L   L  +   +P+I + L
Sbjct: 72  LAEVRRILQQVE-LSTRFLLSYGGETEVLRVATPPTFGARWLIPQLNGWRHRHPNIHLDL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--EPLSIQ 184
             + +  D+   + D A     P         +L    + A  AP  L      EP  + 
Sbjct: 131 RQELEPDDLRQGHCDLAFFFG-PGTLPGAECIRLFGEQLVAVCAPSLLPAGGLDEPTQLA 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL             +     +W A+++R   +      + +++   ++    G G+ALL
Sbjct: 190 EL------VLLQNASRAEAWHDWFASLERNC-QGCYHGPRFDTFYMCIRAAQAGCGVALL 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P ++V++      L       +      Y  YPE      K++ F  ++  +   
Sbjct: 243 PRFLVEEELAEGKLAIAWPHALPSQEAYYLAYPEHAAEVPKVRHFIEWMVERLEQ 297


>gi|167567591|ref|ZP_02360507.1| probable transcriptional regulator [Burkholderia oklahomensis
           EO147]
 gi|167575146|ref|ZP_02368020.1| probable transcriptional regulator [Burkholderia oklahomensis
           C6786]
          Length = 290

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 121/268 (45%), Gaps = 11/268 (4%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           + LS+S++ + ++ LE  +G++L  R  R LTLT +G   +     +  +L   +  L +
Sbjct: 1   MGLSKSAVGKNVARLEQRLGVRLLERTTRALTLTTEGRLYYESCLRILDQLVHVEAVLAQ 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
              + +G LR++ +   G++ +   L +    +P +Q+ +   ++ +D+  +  D  +RL
Sbjct: 61  RRHEVAGPLRVSLSTSFGRHWVLPVLIDLAGRHPLLQLDVSFTDRFVDLIDEGVDVVVRL 120

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF---GDLIPKCME 203
            +    ++   R L        A+P YL     P +I EL  H+ I F   G  IP  + 
Sbjct: 121 GELRDCANTACRPLGIQRSVLCASPAYLAARGRPETIDELTGHDCIVFARDGRAIPWVLS 180

Query: 204 DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIME 260
           D       +R +     +   +    ++    + G+G+A LP ++V D+     L  ++ 
Sbjct: 181 DVR-----NRAVTANIRAKHTIGQGDALRDAVLSGNGLAYLPTWLVADDLRTGRLDTVLP 235

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRN 288
           D    S  ++  +P A   + K++A   
Sbjct: 236 DFTGGSMPIHALWPVARGPSPKVRAVVE 263


>gi|153833560|ref|ZP_01986227.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
 gi|148870087|gb|EDL69034.1| transcriptional regulator, LysR family [Vibrio harveyi HY01]
          Length = 309

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 118/284 (41%), Gaps = 8/284 (2%)

Query: 12  YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTS 71
             +    S   AA++L  S +  SRQ+  LE  + ++L  R  R   LT  G + ++   
Sbjct: 22  IALCEEKSIAGAAKKLRCSNAHASRQLRQLEEILSVQLIQRTTRQFNLTYDGLRFYQQVK 81

Query: 72  EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK 131
            +    E    ++ ES    +G LRIA +   G  LL   L EF  LYP++  ++I    
Sbjct: 82  GLMEGAEQINEQVMESDR-VAGHLRIAASASFGAALLNRALIEFRQLYPEVTFEVIFSET 140

Query: 132 DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL 191
            +D+     D A            I   L ++H   +A   YL N     + ++L + + 
Sbjct: 141 PLDLIESGFDVAFFFTNN-PPEGYIGHHLRSLHCKPFAHKAYLSNKPRIATPEDLYQLDH 199

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIV-- 249
           I + + +              + +     S L  N   S+++  + G G+A+L ++ +  
Sbjct: 200 IVYRNEVLNLDTWHFHHMETKQKVSVALQSVLSFNLVQSMLEATLAGCGVAMLDEFALEK 259

Query: 250 ---KDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNF 289
              ++   LV ++ +  T +   +Y  YP+      + +AF ++
Sbjct: 260 LSGEERSQLVPLLPEWQTDAILPLYILYPKREHLPKRTQAFIDY 303


>gi|260574837|ref|ZP_05842839.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
 gi|259022842|gb|EEW26136.1| transcriptional regulator, LysR family [Rhodobacter sp. SW2]
          Length = 295

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 126/298 (42%), Gaps = 7/298 (2%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           MS + WD++R  + VAR G+ + AAE L +  +++ R I  LE  +G +LF RHARG T 
Sbjct: 1   MSIETWDEIRTAFQVARMGTVSGAAEVLGVHHATVIRHIDALEKRLGARLFQRHARGYTP 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G  L  V      +       ++      SG+L + T+I     LL   L  F  L+
Sbjct: 61  TEAGRDLLGVAQATEEQFNQLASRIKGQGETVSGEL-VVTSISGIAGLLTPVLAGFQALH 119

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + ++ + D +   +    A  AIR     +    + + LV I    YAA  Y+     
Sbjct: 120 PGLTVRFLTDMRLFRLDYGEAHVAIRAGASPEEPDNVVQPLVRIRTGLYAARSYIAAHGL 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L  H+ I   + + +      WL    +    P     + +    +      G+
Sbjct: 180 PAGEADLAGHHFIAADNALSRAPFQ-RWL----QDSVPPEAITYRASEPAGLEAAVRAGA 234

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           G+  +  Y+   +P+LV ++      +  ++      L  T K+++F   +   A  W
Sbjct: 235 GLGFMSVYLAAGDPDLVEVLPPRPDWAGHLWIVTHVDLHRTLKVQSFLAHLKQAAAGW 292


>gi|149911571|ref|ZP_01900184.1| D-serine deaminase activator [Moritella sp. PE36]
 gi|149805350|gb|EDM65362.1| D-serine deaminase activator [Moritella sp. PE36]
          Length = 310

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 128/298 (42%), Gaps = 9/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   A+ GSFT AAE L ++ S++S +I+ LE E+G KLF+R  + L LT +G+
Sbjct: 16  LANLDTFVKAAQYGSFTQAAEVLFITPSAVSHRIAKLEQELGFKLFHRLHKQLKLTSEGA 75

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L R    +++ L+    +++    + SG+L I     +    L   + +F   YP IQ+
Sbjct: 76  RLCRSCERLFNSLDEELNDIRS--NELSGRLTIYARPSISLCWLVPRIHDFHRQYPAIQL 133

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++  N DI+    + D A+          L   +L++  +    +P Y +        +
Sbjct: 134 DILTGNDDINFHTQFIDVALYYTSG-PFPGLSNIELMSEEVTPVCSPAYAELHDLIDKPE 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLGSGIA 242
            +   +L+      P+   +  WL   +R           L  +     M   +  +G+A
Sbjct: 193 NIRNCSLLHDCKAWPQAAYNAEWLEWTERHQIREVNYNRGLSFDRSDLAMVAAINHAGLA 252

Query: 243 LLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +    +V     +  L+     +I+P ++  +  Y   +    ++K   +++  +A  
Sbjct: 253 IGRKRLVDKHLRSGELIAPFPALISPATYQYHAVYSADITPNPRVKVLLDWLQQQAEQ 310


>gi|293395436|ref|ZP_06639720.1| glycine cleavage system transcriptional activator [Serratia
           odorifera DSM 4582]
 gi|291422120|gb|EFE95365.1| glycine cleavage system transcriptional activator [Serratia
           odorifera DSM 4582]
          Length = 301

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 135/296 (45%), Gaps = 13/296 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V  R  +FT AA +L ++QS++S Q+  LE   G++LF R  + L+LT  G+ L 
Sbjct: 10  LRAFEVATRHTTFTSAAAELFITQSAVSHQLKKLEEIWGLQLFQR-GKNLSLTPAGAALA 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  E + KLETT  +L+E   +   +LR+ TT       L   L E   L+P+I + L 
Sbjct: 69  PLVREFFSKLETTLADLREQKGRV--RLRVNTTYSFALKWLLPRLPELARLHPEILVTLE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             ++ I+ +   AD AIR        +L    +    +   A+P  L+    P    EL 
Sbjct: 127 STDQAINFASTDADVAIRFGHG-NYPALHTEFMFREQLFPVASPALLQRFGTPREPAELL 185

Query: 188 KHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           ++ L+T    DL+PK    F  +      + E     ++       ++  +LG GIAL  
Sbjct: 186 RYPLLTRDGADLVPKWDVWFKLVGINTEVLHE----SVRFADTNMTIEAALLGQGIALAR 241

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              V+       LVR+           YF  P+ ++    +  FR+++  +++  +
Sbjct: 242 SGHVEKELGEGTLVRLFAVPFPSPAAYYFVCPQGIETRPHIVKFRSWLQAESQQAQ 297


>gi|153829446|ref|ZP_01982113.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
 gi|148875100|gb|EDL73235.1| transcriptional regulator, LysR family [Vibrio cholerae 623-39]
          Length = 287

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 135/291 (46%), Gaps = 14/291 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             ++ +F  V  +GS + AA++L++S+S +S+ +  LE E+G+ L  R  R  TLT+ G 
Sbjct: 4   LRQMAIFAHVVEAGSVSAAADKLNVSKSVVSQHLKTLENELGMVLMKRTTRRQTLTDVGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    E+    E+      +   +P G+ RI  +  L  +L+   + E +  YP ++ 
Sbjct: 64  QFYLKCKELNSIAESAWDIASDYQTEPQGRFRITASHALMDSLVAPVIAELMTQYPKLKP 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI D++ +D+  +  D AIR+  P   SSL Q+++             L+  R      
Sbjct: 124 ELIADDQHLDLMANDIDMAIRIG-PSHDSSLKQKRIGEFRDVLCG----LEERRTK---- 174

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L++   I      PK +E     A     I   + SC   NS+ + +     G+G+ ++
Sbjct: 175 -LNESPYIA-NVWQPKQIEHHFRSAEGQTWIYRQQASC-TANSFHTCLALIRSGAGVGIV 231

Query: 245 PDYIVKDNP-NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           PD+ + +    LV ++ +   P  TVY   P +      +K   +++  +A
Sbjct: 232 PDFYLSERGSQLVNVVPNYTLPINTVYTLTPYSSHTPTIVKLCTDYL-EQA 281


>gi|90410066|ref|ZP_01218083.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90329419|gb|EAS45676.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 303

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 133/301 (44%), Gaps = 15/301 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH---ARGLTLTE 61
            + LR F   AR  SF+ AA++L+++ ++I +Q+  LE  + IKLF R    +  LTLT+
Sbjct: 7   LNGLRAFEASARHLSFSMAAKELNVTPAAIGQQVRLLEEWLDIKLFNRSVVGSARLTLTK 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           Q  K     +  +  L +    LQ+ +      L +  +       L   +  F L +P+
Sbjct: 67  QAVKALPEITRGFEHLSSGLSLLQKPANNHL--LTVTVSPAFAAKWLLMRIDSFQLQHPE 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             ++L  + + +D   +  D  +R  K    + L    L+   +    +P  ++      
Sbjct: 125 FDLRLDTNTRTVDYFSEGIDIGVRYGKG-NWAGLSAALLMKEKVFPVCSPDLIQQG--LK 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQYCVLGS 239
             +++    L+     +P+      W   ++    +G      L++N+  S++Q  V G 
Sbjct: 182 KPKDIQHFPLLH-DQSLPEDSGFPTWQGWLENHNIMGINTDRGLRINNSASVIQAAVSGQ 240

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIAL    +VKD+     L+R   D  +P     Y  +     NT K++AFR ++  +A+
Sbjct: 241 GIALGRSVLVKDDLDCGRLIRPFADSQSPVELAYYVVWKPEHDNTEKVQAFRLWLQQQAK 300

Query: 296 D 296
           +
Sbjct: 301 E 301


>gi|88801143|ref|ZP_01116688.1| putative LysR-family transcriptional regulator [Reinekea sp.
           MED297]
 gi|88776124|gb|EAR07354.1| putative LysR-family transcriptional regulator [Reinekea sp.
           MED297]
          Length = 300

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 128/298 (42%), Gaps = 11/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L  F  +A  GSF+ AA +L    S++SR+I+ LE+++G +L  R  R L+LT+ 
Sbjct: 1   MDLQALLWFVEIAHCGSFSEAARRLVEPSSNLSRRIAKLESDLGERLLTRTTRALSLTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L  +  ++    +   ++ ++S  +P+G LR+       +  L   +  +   +P +
Sbjct: 61  GRQLLPLAEQMLTD-QQAVLDWRDSQQEPNGTLRVTAPGSFARGPLTPWVIRYRQQFPSV 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q++LI  N  ++      D A R + P+  S+L  ++L +IH   + +P +L        
Sbjct: 120 QVELIHSNDYLNFQAHRLDFAFR-QGPLPDSTLHAKRLFSIHYGVFVSPGWLTKHGPVTE 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I  L+ H +IT G         F         + +P       + +   +Q    G G  
Sbjct: 179 IARLNAHQVITTGATSAVLPWWFR------SGVWQPAQISYLFDDFDQCLQAAAEGEGPT 232

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               Y  +    +  LV ++ +        +  YP     + K  +F+  I  + R +
Sbjct: 233 FASHYQAQPWLASGELVEVLAEERADPIGFHLVYPTRTHRSRKSLSFQQHIEQEVRQF 290


>gi|288962167|ref|YP_003452462.1| lysR-type transcriptional regulator [Azospirillum sp. B510]
 gi|288914433|dbj|BAI75918.1| lysR-type transcriptional regulator [Azospirillum sp. B510]
          Length = 301

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 109/288 (37%), Gaps = 7/288 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           + + L     +AR GSF  AA  L +S +++S  I  LE  +G++LF R  R ++LT+ G
Sbjct: 5   ELNDLDAVLAIARRGSFRAAALDLDMSTTALSNAIGKLEAGLGVRLFNRTTRSVSLTDAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        +      ++     PSG LRI       + ++   + EFL   P + 
Sbjct: 65  RVFVDQVGPALRDVHGALEAVRSQQTTPSGTLRINAFAMAAREIISPLVLEFLRRNPRVH 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+ + + +DI  +  D  +R+   + S  +              +P Y +    P   
Sbjct: 125 VDLVTEGRLVDIVAEGFDLGVRVADLVPSDMIAISLGRPQRYAVVGSPAYFERHERPRVP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIA 242
            +L  H  I    +       + W    D    +  +   + ++         +   G+ 
Sbjct: 185 PDLLNHPCI---RVRLPNGALYRWQFEKDGQATQIDVRGPITLDEASLARIAVLEAIGLG 241

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
              +  V+   +   LVR+++D       +   YP     +  L+AF 
Sbjct: 242 FFMEQNVRTDIEAGRLVRVLDDWTPARAGLCLYYPGRRNPSAALRAFI 289


>gi|317484344|ref|ZP_07943265.1| LysR substrate binding domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924422|gb|EFV45587.1| LysR substrate binding domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 314

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 115/295 (38%), Gaps = 10/295 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F VVA+  SFT AAE L ++QS++S +I  LE E+G  LF+R  R + LTE+G  L+
Sbjct: 13  LYSFTVVAKHMSFTKAAEDLCITQSAVSHRIRCLEQELGFPLFHRLTRKIILTEEGKTLY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    +  T   +QE+  +  G L IA    +    L   L EF   +P+I + + 
Sbjct: 73  GALDASLKLIHETIRNIQEA--ELQGDLVIACAPSIAGCWLLPLLPEFQHEHPNISLHIR 130

Query: 128 LDNKDIDISMDY--ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             N  I    +   AD AI     I    L    L+  ++    +  Y +      + + 
Sbjct: 131 SGNDLISYENEEGNADVAIYCGDSITD-GLHATPLLRDNLLPVCSQRYAREHDLIENPEA 189

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L    L+              W    +     G P  S    +           G G+AL
Sbjct: 190 LRNCELLHEHPEAANTPFYAGWEIWANWAGITGLPLQSGYSFDRAELTAIAAKQGLGVAL 249

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +++V++      L+     V     T Y           K++ F ++I  KAR
Sbjct: 250 GREWLVREALQKKELIVPFNLVFPAPQTYYVVSTRKGILRPKVRLFHDWILKKAR 304


>gi|89899887|ref|YP_522358.1| LysR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344624|gb|ABD68827.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens
           T118]
          Length = 320

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 130/296 (43%), Gaps = 12/296 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +LR F  VAR  +F  AA+ L L+QS++SRQI  LE EVG+ LF RH R + LT  G++L
Sbjct: 17  QLRAFEAVARHLNFRAAADDLSLTQSAVSRQIQALEDEVGVGLFLRHTRAVELTSAGAQL 76

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  S    ++++    ++ S+ +    + I+T        L   L+ F   +PDI I++
Sbjct: 77  LRAVSPSLERMDSAVRLIRRSAGRK--SVAISTWASFASMWLIPRLEAFQSEHPDIDIRI 134

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+     D A+R   P    S   R L    +   A+P  LK+       ++L
Sbjct: 135 DATDVSVDLDTTDIDLALRYTLPSSVPSNAVR-LFGEQLTPVASPWLLKSGHPLKRGEDL 193

Query: 187 DKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
               LI   D       + +    WL   D    EP+   L  N    I+Q  + G G+A
Sbjct: 194 AHFALIEASDANRTLHLEWLTWRRWLDEHDFKKLEPK-RWLYFNYAHQIVQAALTGQGVA 252

Query: 243 LLPDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L     V D   + +LV ++  +        +           + +AF +++  +A
Sbjct: 253 LARTPQVADSLASGDLVEVLPGMRLDSPLAYWLIVSPRSAARPETRAFCDWLMAQA 308


>gi|157960277|ref|YP_001500311.1| LysR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845277|gb|ABV85776.1| transcriptional regulator, LysR family [Shewanella pealeana ATCC
           700345]
          Length = 306

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 126/296 (42%), Gaps = 8/296 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  +  SGS + AA++L LS+S +S  +  LE  VG++L +R  R   LT 
Sbjct: 1   MDHLRHMAIFKQIVDSGSISAAADKLDLSKSVVSHHLKSLELAVGVQLLHRTTRRQQLTP 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   ++   E+         + +E++ K +G ++I++   L  +++   +       P 
Sbjct: 61  AGKDFYQRCRELGDISALAWQQAREAADKLAGPIKISSPHALVDSIIAPAIASLCTNNPM 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+  + + ++ ID+     D A+R+ K + SSSLIQRK+        A+P ++K     +
Sbjct: 121 IRPHIQMQDRRIDLLGQDIDLAVRVGK-LASSSLIQRKVGQFRDVLCASPVFIKQNTRLI 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN------SYLSIMQYC 235
             ++    + I                A+       P    L  N      +  +++   
Sbjct: 180 KAEDWVSLDYIANSWQGQSIQHSLQSKASSKGNAKAPNELSLNFNANRYADTSSAVLSLA 239

Query: 236 VLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             G GIALLPD++ +  P LV ++     P   VY  +         +K   + + 
Sbjct: 240 KAGLGIALLPDFVFEQEPLLVELLPTHQCPLNNVYALHDFGRTPPLLIKKTIDALL 295


>gi|226945427|ref|YP_002800500.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
 gi|226720354|gb|ACO79525.1| LysR family transcriptional regulator protein [Azotobacter
           vinelandii DJ]
          Length = 293

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 124/291 (42%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  + R  +   AA  L + Q+++ R+++ LE  +G  LF R + G +LT  
Sbjct: 1   MNWDDARIFLALCREQTLRGAARTLGVDQATVGRRLASLERALGATLFLRTSSGYSLTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +       Q ++     + SG +R+ TT     + +   +       P I
Sbjct: 61  GEVAMAAALNMEDSAAELQRQILGMDGRMSGVVRVTTTDSFATDFVIPAIARLRQAQPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL    + +++S   AD A+R  KP ++  LI R++       +A+  Y++    P  
Sbjct: 121 EVQLQASTQLLNLSKREADIAVRTLKP-ENPELIVRRVARWSSAIFASADYVRAHGVPEP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+ +   +    E    +     PI   RI  +   S L + +    G G+ 
Sbjct: 180 GTAFAGHDLVLYQPYLDSGKE----VTLACEPITHGRI-AMTCTSGLLVRRAVANGLGVG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P  + + +  L+R+      P + ++    + +++T +++   + I   
Sbjct: 235 EIPLPLGEADG-LLRLWPARACPPYDIWLVTHKDVRHTARVRVVIDAIAEA 284


>gi|238028735|ref|YP_002912966.1| LysR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237877929|gb|ACR30262.1| Transcriptional regulator, LysR family protein [Burkholderia glumae
           BGR1]
          Length = 307

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 134/298 (44%), Gaps = 9/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L +   +  +G+ ++AA +L +S++++S +++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDLNALTLLVEILDAGNLSNAARRLKMSRANVSYRLNQLEKSVGLQLVRRTTRRIEPTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             +L      + H+L   +  +     +  G++R++     GQ ++   L  F   +P I
Sbjct: 61  ALRLVEHGRRIQHELLAARETVATLGQELQGRVRLSVPSGYGQIVMSDWLIAFKRRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D+  D  D A+R+       +L+ R +  +   A A+P +      P +
Sbjct: 121 VLDVVFENRVEDLLRDEVDIAVRVLAEAP-QNLVARDMGAVRYVACASPEFAARHGMPAT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L    +IT   ++ + +    +L      +       L   ++L + Q  + G G+ 
Sbjct: 180 LDALADAPVIT-ATVVGRQLRIAAYLDGERHEVLL--APTLISENFLFLRQAVLAGLGVG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++PDY++ D+     +V  ++      F   +   Y     +T  +  F  FI  +AR
Sbjct: 237 IVPDYVIHDDWRRGAVVTTLDAYRLSIFGTRMALLYMPNRHHTRAMATFIEFILDEAR 294


>gi|117921055|ref|YP_870247.1| LysR family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117613387|gb|ABK48841.1| transcriptional regulator, LysR family [Shewanella sp. ANA-3]
          Length = 320

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 126/297 (42%), Gaps = 13/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S T A+++LH++  +IS+QI  LE  +G  LF R  + + LT +  
Sbjct: 26  LNALRAFESAARLQSMTLASKELHVTHGAISKQIRVLEEFLGFALFVRLHKKVALTNEAK 85

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L +   +L+    +P   L I     L  N L   +++F   +P + +
Sbjct: 86  RYLPHVQAALQTLSSATADLRSQGSRPQ-TLAINVLPSLTINWLIPRMEQFKSRHPHLYV 144

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +  +D S    D AIR    +    +   KL+   +    AP       +  SI+
Sbjct: 145 DLSIGDFAVDFSQGRYDIAIRSSTQLPR-GVNYIKLMDEDLCLVCAPSL---APKLKSIE 200

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++++  L+      P+  E   W   V   + + +     V  +  + Q    G G AL+
Sbjct: 201 DINQVTLLKHTTR-PELWEY--WADKVGLVLTQAQ--TFGVEHFYMLSQAAASGMGAALI 255

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P + +++   N +LV   E   T  +  Y   P++     K++AF +++      ++
Sbjct: 256 PRFFIEEQLANGSLVIPFEAPFTSPYAYYLLTPKSPSLPLKVQAFIDWMLELFSPYR 312


>gi|148554644|ref|YP_001262226.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148499834|gb|ABQ68088.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 326

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 127/291 (43%), Gaps = 12/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L L+QS++SRQI  LE  +G +LF+R  + + LT  G+   
Sbjct: 40  LCAFDAAARHQSFTAAARELALTQSAVSRQIRALEELLGSELFHREKQKVKLTLAGNAYA 99

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R       ++ +  +  + +       L +A     G   L   L  FL  +PDI + + 
Sbjct: 100 REIRGALARISSATLGFRANPGGA--SLHLALLPMFGLRWLMPRLPGFLAAHPDITVHVS 157

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D   +  D AI   +  + +     +L+   +    +P             +L 
Sbjct: 158 TRTTPFDFRTETIDAAIHFGEG-EWAGAQLDRLMGETVAPLCSPALRARLGA-AKPADLI 215

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+    L+ +      W A ++   GE  +  + ++ +L + +    G G+ALLP++
Sbjct: 216 EAPLLH---LMSRPDAWERWFAAMEVDPGE--VHGMLLDQFLLVAEAARAGLGVALLPEF 270

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +V+    + +LVR ++  +  +   Y  +P   +    L AFR +I  +AR
Sbjct: 271 LVEAELRSGDLVRALDAPVVQADHYYLVWPHTHERHPPLDAFRTWILQEAR 321


>gi|254245647|ref|ZP_04938968.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124870423|gb|EAY62139.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 311

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 118/276 (42%), Gaps = 7/276 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L +S++++S++I+ LE   G+ L  R  R + LT+ G  L   T + +  +      +
Sbjct: 30  QRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTDAGQTLVDSTRDAFESIGQHFARV 89

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           ++ + +P G LR+   + LG+  +  +L +FL  +P +QI+L L ++   ++ +  D AI
Sbjct: 90  KDLAGEPRGLLRVTVPVALGRQQIVPHLPDFLRQHPGVQIELDLSDRLHSLTQEGFDLAI 149

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R       +  +  KL        A+  YL     P    EL  H+ + +          
Sbjct: 150 RHTTTAPQTH-VAWKLCDTRSLLVASRDYLDARGAPRHPSELVDHSCLCYLRDNEPAAWS 208

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F       + +  P       N+  ++ +  + G GIALLPD+  + +     LV +++ 
Sbjct: 209 FEPDGRRRQRVSVPVRGSFAANNSEAMREAALGGLGIALLPDFSARRDLDAGRLVALLDG 268

Query: 262 VITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
                     ++   P +      ++A    +  + 
Sbjct: 269 WRPSGAFGDHIFAIRPYSPVVPSAVRALVRHLRERL 304


>gi|254254488|ref|ZP_04947805.1| regulatory protein LysR [Burkholderia dolosa AUO158]
 gi|124899133|gb|EAY70976.1| regulatory protein LysR [Burkholderia dolosa AUO158]
          Length = 327

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 109/289 (37%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 37  QALRAFESAARLASFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGVTLTTDGQC 96

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 97  LYEAVRLSLDTLRGATATLRARRE--HGALTIVTDFGFATYWLMPRLAGLKRVMPDVDVR 154

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+AD AI        S    R L    +    +P +          + 
Sbjct: 155 VVTS-QDYDAQRDHADIAILFGDGHWPSCTAAR-LFPESVTPVCSPAFRDAHAHVSRPEH 212

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    +           +     +  NSY  ++   +LG G+AL  
Sbjct: 213 LSALPLLHVQPTRPERWLSWPGWFDAHGLDAQAAARGVTFNSYALVIHAALLGEGVALGW 272

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +      LV++++  +  S   +   P           FR ++ 
Sbjct: 273 SPLVDELVATGQLVKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 321


>gi|190893017|ref|YP_001979559.1| transcriptional regulator protein (activator), LysR family
           [Rhizobium etli CIAT 652]
 gi|190698296|gb|ACE92381.1| transcriptional regulator protein (activator), LysR family
           [Rhizobium etli CIAT 652]
          Length = 289

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 128/292 (43%), Gaps = 12/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L ++Q+++S+Q+ GLE  +G+ LF R  RGL +T +G 
Sbjct: 8   LNGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKGLEKRLGVALFQRLPRGLKITAEGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    +  + ++ TT   ++   V+    L +          L   L +F   +P I I
Sbjct: 68  ALLPTVTASFDQMATTLDRIEAGEVREL--LFLGVIGTFAVGWLLLRLADFQRRHPFIDI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +N  +D + +  D AIR        +   + L    + A   P    + R P    
Sbjct: 126 RVSTNNNRVDPAAEGLDFAIRFGSGSWHGT-EAQHLFEAPLSALCIPELADDLRTP---A 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  E   W A    P      + +  +S +++M+  + G G+AL 
Sbjct: 182 DLAGATLL----RSYRADEWSTWFAAAGVPPAAQVNAGIVFDSSVAMMEAALQGLGVALA 237

Query: 245 PDYIVKDNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +   + +   I++   T     + +    ++   T  ++AF ++IF +A
Sbjct: 238 PPSMFSRHLSSGAIVQPFTTTISLGSYWLTRLQSRPVTPAMRAFSDWIFAQA 289


>gi|87198501|ref|YP_495758.1| LysR family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134182|gb|ABD24924.1| transcriptional regulator, LysR family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 318

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 119/267 (44%), Gaps = 7/267 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L VF VV+   SFT AA +L  SQS++S  +  LE  +G+KL  R  R ++ TE G
Sbjct: 5   ELGDLSVFLVVSEERSFTRAAVRLGTSQSAVSLAVRRLEEHLGLKLLARTTRSVSPTEAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L          +      L     +P+G +RI T+    + LL   +   +  YPDI+
Sbjct: 65  EQLLATLKPSLGDIRDRLTSLTRLRARPAGLVRITTSRHAAETLLWPAVDAVMARYPDIE 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +D    +I  D  D  +RL + ++   +  R    + M    AP YL+    P   
Sbjct: 125 VEISIDGALTNIVADRFDAGVRLGESLEKDMVAVRIGPDLRMAVVCAPAYLEGREPPRGP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIA 242
           ++L+ H  I         +  + W    D      R+   L VN     ++    G G+A
Sbjct: 185 RDLEAHRCINLRMATRGNL--YAWEFEKDGRALNVRVEGALIVNDAGIAVRAAKAGHGLA 242

Query: 243 LLPDY--IVKD--NPNLVRIMEDVITP 265
            + +   +++D    NLVR++ED   P
Sbjct: 243 CVLEDEGVLRDIEAGNLVRVLEDWCPP 269


>gi|59713207|ref|YP_205982.1| LysR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59481455|gb|AAW87094.1| transcriptional regulator, LysR family [Vibrio fischeri ES114]
          Length = 316

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 74/280 (26%), Positives = 136/280 (48%), Gaps = 7/280 (2%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V   GSFT+ AEQ +L +S IS+QIS LE E+G++L  R  R L+LT  G+++      
Sbjct: 12  EVTELGSFTNVAEQKNLDRSVISKQISRLEEELGVRLLNRTTRSLSLTAAGNEMVNQAKL 71

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +   L  T    Q    +P G LRI +++  G+  +Q  +  F   YPD++ +L L+++ 
Sbjct: 72  LRDLLNNTHRLAQNYHSEPRGILRITSSMMFGRQYVQDAISVFQKQYPDVKCELRLEDRV 131

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           +DI  +  D   R+ +P ++SSLI RK+    +   A+P +++   +  +I++L+     
Sbjct: 132 VDIVQEGFDIGFRIGRP-KNSSLISRKIARSRLLIVASPDFIQQHGKIETIEKLESLPAT 190

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD- 251
            +       ++ F +L               +VN    +++  V G+ +A++   ++++ 
Sbjct: 191 IYA-APGLFIDKFTYLDENKVEQQFHLNVAYKVNDVEMVVKSAVAGNTLAVVTAQMIENE 249

Query: 252 --NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRN 288
                L+ IM  +    F T +  YP       K K F +
Sbjct: 250 IIEGKLIPIMTHLNLEDFGTFFAVYPHRDA-PIKTKLFID 288


>gi|54303442|ref|YP_133435.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|46916872|emb|CAG23635.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 297

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 134/300 (44%), Gaps = 15/300 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH---ARGLTLTEQ 62
           + LR F   AR  SF+ AA++L+++ ++I +Q+  LE  +GIKLF R    +  LTLT+Q
Sbjct: 2   NGLRAFEASARHLSFSIAAKELNVTPAAIGQQVRLLEEWLGIKLFNRSVAGSSRLTLTKQ 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             +     +  +  L +    L++ +      L +  +       L   +  F L +P+ 
Sbjct: 62  AIQALPEITRGFEHLSSGLSLLKKPTSNHL--LTVTVSPAFAAKWLLMRIDSFQLQHPEF 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L  + + +D   +  D  +R  K    + L    L+T  +    +P  ++       
Sbjct: 120 DLRLDTNTRTVDYFSEGIDIGVRYGKG-NWAGLSTALLMTEKVFPVCSPDLIQQG--LNK 176

Query: 183 IQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++    L+    L           WL + +  +G      L++N+  S++Q  V G G
Sbjct: 177 PEDIQHFPLLHDQSLPEDSGFPTWQGWLESHN-IMGVNTERGLRINNSASVIQAAVSGQG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           IAL    +VKD+     L+R   D  +P     Y  +     NT K++AFR ++  +A++
Sbjct: 236 IALGRSVLVKDDLDCGRLIRPFADSQSPVQLAYYVVWKPEHDNTEKVQAFRLWLQQQAKE 295


>gi|310814617|ref|YP_003962581.1| transcriptional regulator, LysR family, putative
           [Ketogulonicigenium vulgare Y25]
 gi|308753352|gb|ADO41281.1| transcriptional regulator, LysR family, putative
           [Ketogulonicigenium vulgare Y25]
          Length = 292

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 120/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DWD++R  Y VAR G+ + AAE L +  +++ R I  LE  +G KLF RHARG T TE G
Sbjct: 3   DWDEIRTAYQVARFGTVSGAAEALGVHHATVIRHIDALEGRLGAKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       +Q    + +G+L I +       LL   L  F   +PDI 
Sbjct: 63  QDLLRVAQVADDQFNQMITRIQSHKEELAGELVITSLQG-MTELLLPVLMAFQAEHPDII 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +   +   +    A  AIR     +    + + L    M   AA  Y+     P S 
Sbjct: 122 LRHLSGERLFRLEYGEAHIAIRAGSIPEDPDHVIQPLAQHPMALVAAESYIARYGLPASE 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +   H  +   D          WLATV       +    +      +    + G+GI  
Sbjct: 182 ADFAGHRFVGH-DAEDYRAPYSRWLATV----VPRKQVVYRTLDLQEMYAAVIAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +P +++  NP L  ++         ++      L  + K++ F   +   ARDW
Sbjct: 237 VPRWLLGVNPELREVVPLRDDWISPLWVVTHVDLHRSAKVQGFLRMLKGAARDW 290


>gi|160895637|ref|YP_001561219.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361221|gb|ABX32834.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 354

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 134/310 (43%), Gaps = 16/310 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D +  RVF  +A + S T AAE+  +++S++SR++  LETE+G +L  R  R + LT+ 
Sbjct: 35  MDLNLCRVFIDIAEAKSLTRAAERGGMTRSNVSRRLRALETEMGAQLLRRTTRNVELTQA 94

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+R    +  +L+  +  + +     SG++ +      G   L+  +  F   +PDI
Sbjct: 95  GQLLYRRCLAMMEELQRARDAIHQLRSTVSGEVGVRVPTGFGHFYLKPLILGFCREHPDI 154

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN----CR 178
           +++L+++++  D+     D A+++        L+  +L  +  +  A P  L+       
Sbjct: 155 RLRLLINDQMADLVASKVDLAVQITSAPLDD-LVATRLCDVRWNFVATPACLQALEQSLG 213

Query: 179 EPLS-IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            PL    +L +  LI     +   +                 +  LQ   Y  +    + 
Sbjct: 214 RPLRAPADLLQARLI-LPLAMGGRLAWLTGSGDDGVSAALDVLPSLQSGDYRLLYDAVLD 272

Query: 238 GSGIALLPDYI---VKDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFL 292
           G G+ALLPDY+         LV +++ V+       +Y       + T   +AF+ F+  
Sbjct: 273 GLGLALLPDYVTSAALAGGTLVAVLDQVVFSGLGNAMYLVRMPDRQPTMAARAFQQFLRE 332

Query: 293 ----KARDWK 298
                A  W+
Sbjct: 333 AIVTAAPSWQ 342


>gi|229590782|ref|YP_002872901.1| LysR family regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229362648|emb|CAY49556.1| LysR family regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 301

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V  R  +FT A+E+LH++QS++S Q+  LE   G++LF R  + L LT  G+ L 
Sbjct: 10  LRAFEVATRHATFTSASEELHVTQSAVSHQLKHLEDLWGLQLFQR-GKSLRLTPAGAALA 68

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            +  E +  LE T  +L+E   +   +L+++ T       L   L      +P+I I L 
Sbjct: 69  PIVREFFMNLEATLSDLREQKGRV--RLKVSATYSFALKWLLPRLPSLSQQHPEILITLE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +K I  S   +D AIRL        L    ++   +   A+P  L     P    EL 
Sbjct: 127 TSDKAITFSSADSDVAIRLGNG-NYPGLHSEFMLREQIFPVASPDLLNRFGTPQEPAELL 185

Query: 188 KHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           ++ L+T    DL+PK    F  +      + E     ++       ++  +LG GIAL  
Sbjct: 186 RYPLLTRDGADLVPKWEAWFEHVGVGSCALNE----SVRFADTNMTIEAALLGHGIALAR 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              V+   ++  LVR+ E         +F  P+ +++   + +FR+++  +
Sbjct: 242 SGHVEAEINDGRLVRLFEVPFASPVAYFFVCPKGIESQPHIISFRHWLLAE 292


>gi|163857040|ref|YP_001631338.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163260768|emb|CAP43070.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 306

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 124/292 (42%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L+ F V AR  SFT AA++L ++Q ++S+Q+  LE+ +G++LF R  +GL LTE G
Sbjct: 7   SLTDLQAFEVAARHSSFTRAAQELCVTQGAVSKQVKHLESFLGVELFLRIRQGLVLTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +       ++E   +EL     +  G L +      G   L   L  F+ + PDI 
Sbjct: 67  QSYLKKIQAGLGQIEAATVELIAHQGQG-GTLHLTCMPTFGARWLIPRLATFMRVRPDIH 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +   +  D S    D A+R    I   S     +V   +    +P  L +     S 
Sbjct: 126 VEFLPHRQGYDFSTPELDAAVRFGDGIWPGSG-ADYIVGRDIVPVCSPRLLGDG--CQSA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL ++ L+     +    + F       R   E      + + Y  + Q    G GIAL
Sbjct: 183 DELLRYPLLHHTSALEGWRDWFEQAGCDTRRALE----GARFDQYSLLSQAAAAGFGIAL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +P  +++D   +  L   +   I      Y CYPE   N   L+AFR ++  
Sbjct: 239 IPRCLIEDELRDGKLAVALRLPIRARQGYYLCYPEQKANLPILQAFRAWLME 290


>gi|108763221|ref|YP_635435.1| LysR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108467101|gb|ABF92286.1| transcriptional regulator, LysR family [Myxococcus xanthus DK 1622]
          Length = 301

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 116/292 (39%), Gaps = 5/292 (1%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+F   + L  F VV R  SF  AA +L +S S++S+ +  LET +G+ L  R  R ++L
Sbjct: 1   MAFTPLNALNAFLVVGRKRSFAAAASELGVSASALSQSVRQLETRLGVVLLTRTTRSVSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T+ G +L         +             + SG +R+         ++   L  FL L+
Sbjct: 61  TDAGRRLLESAGPPVEQALDALKTATARPGEVSGSVRLTVPTVAVTPVVTPILTRFLRLH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P +++ L ++++ +D+  +  D  IR+ + ++   +  R   +       AP YL     
Sbjct: 121 PRVEVDLRVEDRLVDVVAEGLDAGIRMSEALERDMVQVRLSSSFRFVVVGAPAYLDRRGT 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P    +L  H+ +         +  +  L    R    P         + + ++    G 
Sbjct: 181 PERPTDLLTHDCLCIRSETTGSIYQWE-LERGQRSWRVPVRGPFVSAHWKAHVELAEAGL 239

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A + +  V        L  ++E         +  +P   + +   +AF +
Sbjct: 240 GLAYVFEPSVAAELARGTLRLVLEPYAARVEGFFLYFPSRAQVSPAFRAFLD 291


>gi|115359873|ref|YP_777011.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285161|gb|ABI90677.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 295

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 118/290 (40%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L +F  +   G    A  ++ LS +++S +++ LE+  G  L  R  R ++LT++
Sbjct: 1   MLLDNLALFLRIVEKGGLAAAGREVGLSPATVSERLAALESHYGAALLTRTTRAISLTDE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      +  + +  +  ++  +   SG +R++   DLGQ  +   +  FL  +P +
Sbjct: 61  GRTLVAGARRLLAEADELESRVRLGAQTLSGPVRLSAPADLGQARVVPVVDAFLAEHPGV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L +  +D+     D AIR R  +  S+L  R L        AAP  L     P  
Sbjct: 121 TVDLHLGDGYVDLVGQGLDFAIR-RGTLADSALRSRSLGRSRRVVCAAPACLAAHGTPRH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             EL  H+ I          E   W   +D  +    +   +V N    +  +CV G GI
Sbjct: 180 PDELAAHDCIVMRFGQELYAE---WPFRIDDALKRVMVRGRRVANDGALVRAWCVAGHGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           AL     V+ +     LV I+ D       +   YP       +++A   
Sbjct: 237 ALKSLLDVEQDLASGALVEILRDFSPGEVDLQIVYPGGAAQPRRVRALIE 286


>gi|92112946|ref|YP_572874.1| LysR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91796036|gb|ABE58175.1| transcriptional regulator, LysR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 309

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 122/294 (41%), Gaps = 10/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SFT A  +LHL+QS++SRQI  LE ++G  LF RH  GL LT  G +  
Sbjct: 19  LRAFEAAARHASFTQAGSELHLTQSAVSRQIKRLEDDLGRPLFERHYEGLRLTPAGERYF 78

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V   +   L      L+        +L +A++  +    L   L +F   +P I+I+++
Sbjct: 79  GVVQRLLRDLRDETARLRRRGDDR--QLTLASSPTIASIWLARQLPDFQRAHPHIEIRIL 136

Query: 128 LDNKDIDISMDYADCAIRLRKP--IQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQ 184
                  + +   D  I    P  +    L    + +   + A  +P YL    +     
Sbjct: 137 TVEDPHRLDLAEFDLGIYYHVPHEVDPPGLDAEAIFSHEEVAAVCSPAYLARHGDIRDAD 196

Query: 185 E-LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L +H L+   D     +    W    +     P  S L+ NS+  +M   + G G+ L
Sbjct: 197 DLLARHTLMVVEDHYHDWLTWEGWYQAQNLAWRTPEHS-LRANSFQLLMNAILAGQGVTL 255

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               ++  +    NLV+ +   +     +    P+    T  ++AFR ++   A
Sbjct: 256 GWTRLLAADLAQHNLVQALPHTLPSRGRLSLLTPQHRHLTEPMRAFRAWVLGPA 309


>gi|33603004|ref|NP_890564.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33568635|emb|CAE34393.1| putative LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 314

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 127/297 (42%), Gaps = 16/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VA+  SF+ AA  L +  S++SR+I+ LE  +G++L  R+ R L LT+ G+
Sbjct: 8   LNDIALFVEVAKRKSFSLAARALDMPTSTLSRRINQLEKAIGLRLINRNTRRLELTDAGT 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +    + +L+  + +P G+L I+    L   LL  +L  FL  YP+I  
Sbjct: 68  VYLLRCQGLIDETRLAREQLESLTGRPKGRLNISMPYSLAIWLLPTSLGAFLDSYPEIDC 127

Query: 125 QLILD-NKDIDISMDYADCAIRLRK-----PIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           +  L+ N          D  +R  +          + +  +++++  + YA+  YL    
Sbjct: 128 EFDLNLNASATSQGAPFDVILRFGRDSGDDETPDPNTVVDEIISLDSYLYASEDYLARYG 187

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQ-YCVL 237
           EP    +L +H  +          E  +W            +S     + +S++     L
Sbjct: 188 EPRDPADLGRHECL----RTAIDPEHSHWTLHNGERTERVEVSGHVAGNNISVVGTLAGL 243

Query: 238 GSGIALLPDYI----VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G GI  LP       V +  +L R++        ++Y  YP  +   G+ + F +F+
Sbjct: 244 GLGITRLPHCQALDPVIERNSLRRVLPQWRVQPISIYAVYPSPI-LPGRTRVFMDFV 299


>gi|71277790|ref|YP_267519.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71143530|gb|AAZ24003.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 300

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 133/295 (45%), Gaps = 15/295 (5%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V + GSFT AA  L  ++S+IS+ +S LE  +G++L  R  R L LT  G  +
Sbjct: 13  QMLVFDEVLKQGSFTEAAHSLGHTKSAISQYVSQLERALGVRLLNRSTRTLNLTPTGQLV 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            + + ++   L  T  E+QES++ P+G++ I        +L+   + E    YP +  +L
Sbjct: 73  AKRSEQLLELLTVTLDEIQESAIAPAGRIAITAPHAFEASLVTPIITELCDEYPKLTPEL 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +DI     D AI +  P + SS     +  +     A+P YL      ++ Q L
Sbjct: 133 TFTDERLDILKHQLDLAISVG-PQKDSSYHAILIGELESVLVASPKYLAKH-TGINEQNL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
              NLI           +F+     +  I    +  L++N+  S +   + G+GI L+P 
Sbjct: 191 SLQNLIMLP-----WQHNFSLTKNDNNAITFSSLKYLKMNTSTSAINSAITGAGICLIPS 245

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN-----FIFLK 293
             +K    +  L R++ D +     VY  +    +    L+ F N     F+  +
Sbjct: 246 VFIKSELQSGALQRVLPDYLGEPRNVYAVHSYQQQLPLVLRLFINKLKAKFLQEQ 300


>gi|119383058|ref|YP_914114.1| LysR family transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119372825|gb|ABL68418.1| transcriptional regulator, LysR family [Paracoccus denitrificans
           PD1222]
          Length = 294

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 123/297 (41%), Gaps = 15/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LR F  VAR  SFT AAE+L ++Q+++S QI  LE  +   LF R  RG+ LTE G+
Sbjct: 6   LAALRAFEAVARHLSFTRAAEELGMTQAAVSYQIRLLEERLATPLFLRKPRGIVLTETGA 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                        +  +    + S      L I+T        L   L +F + +P++ +
Sbjct: 66  LF---ARPTIDAFDMLREAYADPSADSVSTLSISTVPTFAGAWLSPRLGKFQMNHPNLAV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  +D   +    AIR  +      + +  L+ I      +P  L    E     
Sbjct: 123 RLETSDNLVDFGREDITVAIRAGEGGW-PGVEEHCLMPIEYTPMLSPE-LAKKHELREPA 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIAL 243
           +L    L+   D +      +   A VD     PR    L  + + +  +  + G G+AL
Sbjct: 181 DLLNLPLL---DRVDPNWAVWMREAGVDFWESPPRPGLTLSTDLHEA--RAALEGYGVAL 235

Query: 244 L-PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
           L P +   +    +L++    V     + +  YP+  +N   ++ FR F+  + ARD
Sbjct: 236 LTPRFFRFELATGSLIQPFPLVAQNGRSFWLVYPKGRRNRPAIRKFRAFLLDEIARD 292


>gi|260466646|ref|ZP_05812834.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029652|gb|EEW30940.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 303

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 115/294 (39%), Gaps = 12/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VAR GSFT AA++L L+Q ++SRQI  LE + G +LF R +R + L+  G
Sbjct: 10  NTSALAAFEAVARLGSFTAAAQELDLTQGAVSRQIRVLEDQFGRRLFERDSRNVRLSTAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                       +L    + L     + SG L +A     G   L   + +F+   PDI 
Sbjct: 70  EIYADAVRSALGQLRDAALGLMS--NRHSGILNLAILPTFGTRWLMPMIPDFVENNPDIT 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I  +      D + +  D AI    P          LV   +    +P +L   R   + 
Sbjct: 128 INFVTRVGRFDFARERLDAAIHYGLP-DWPEADSTLLVRETVAPVVSPEFLAG-RAIATP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ++ +  L+          E F       + +  P    +Q   + +  Q C+ G G+AL
Sbjct: 186 ADIGRLPLLHMATRPGAWTEWFE-----HQGLSAPTGPGMQFEQFGTAAQACMAGLGVAL 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP  ++        LV      +      Y   P   +    + +FR+++  + 
Sbjct: 241 LPLILIAGELQRGQLVPAPGQPMQSRSAYYLVVPHGKRGHMPVASFRDWLLGQL 294


>gi|172064360|ref|YP_001812011.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996877|gb|ACB67795.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 327

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 117/293 (39%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT  G 
Sbjct: 29  FELMETFVRIVEAGSLSAAAAQLHTTQPTISRRLQALERSLGMRLLQRTTHAMRLTVDGE 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+       + +L+ +  +P G LR+A     GQ      L  FL  YP + +
Sbjct: 89  RCFTRAKELLTNWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVEPLARFLRDYPRVSV 148

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D      DCAI++ +P    S++  +L  +     AAP  L     P    
Sbjct: 149 EWLLQDEVRDFVGSGIDCAIQVGEP-TDPSVVAIRLSKVPRFVVAAPSVLNGADVPADPD 207

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     +         +   + +    R I       +   +  ++    +LG G  + 
Sbjct: 208 ALAALPWLALRTYYRTELTLTHTVTGDTRRIA--MRPRITTANLYALRSAALLGVGACVG 265

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +++ D+     LV +  D       VY  YP A     +L  F   +    
Sbjct: 266 SSWMLADHLARGELVHLAPDWYAAPLPVYITYPHAQFYPSRLVRFVAMMREAV 318


>gi|167644963|ref|YP_001682626.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167347393|gb|ABZ70128.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 290

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 122/292 (41%), Gaps = 14/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L ++Q+++S Q+ GLE  +G  LF R  RGL LT++G 
Sbjct: 8   LNALRAFEASARHLSFTRAAIELCVTQAAVSHQVKGLEQRLGASLFRRLPRGLALTDEGL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L  V  + + ++           V     L +          L   L  F   +P + +
Sbjct: 68  ALLPVLRDSFERMGDVLERFSAGKVME--VLSVGVVGTFAVGWLLPRLPAFREAHPFVDL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L  +N  IDI+ +  DCA+R        +     L+T  M    AP   +  R P   +
Sbjct: 126 RLFTNNNRIDIAGEGLDCAVRFGDGAWHGT-EAVPLLTAPMTPLCAPAMAERLRTP---E 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L    L+       +  +  +W A     +  P I     +S   +++  + G+G+AL 
Sbjct: 182 ALSSEVLL----RSYRADDWPDWFAAAG--LTPPPIRGPVFDSSWVMVEAAMQGAGVALA 235

Query: 245 PDYIVKDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +   +    R+         T   +  + ++   T  L AFR+++  +A
Sbjct: 236 PSMMFARDLEQGRLARPFGLEIGTGKYWLTWLKSRAATPALAAFRDWLEGQA 287


>gi|254294139|ref|YP_003060162.1| LysR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254042670|gb|ACT59465.1| transcriptional regulator, LysR family [Hirschia baltica ATCC
           49814]
          Length = 294

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 137/289 (47%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD L++  +V+R    T A+++L    ++ISR++  LETE+G+ LF R  RG  LT +
Sbjct: 1   MNWDDLKLLLLVSRYPILTEASQKLGQDATTISRRLKKLETEIGLTLFERTRRGHILTPE 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
             ++      +   + +      ++  + +G +R+ATT  LG   +   +  F  L+P+I
Sbjct: 61  ALEIAAQAEAMEQSILSI-ATYAQTEQQIAGHVRLATTEGLGTYFIAPEIANFTQLHPNI 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + LI      +IS   AD AI L +P Q   L  RKL    +  Y+   YL       S
Sbjct: 120 ALDLIAIPGYANISKREADLAIVLTRP-QKGRLKVRKLTDYQLALYSTQKYLDEFSNIKS 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L  H LI + D +    E         + I       L   S ++ +Q    G+GI+
Sbjct: 179 KSDLSGHTLIGYMDELLYSDE-----LNYYQEIFPDLKPSLCSPSIVAQLQMTRSGAGIS 233

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +LP ++ + +P+LVRI+ + I  + + +    +   +  +++A   F+ 
Sbjct: 234 ILPRFMAEKHPDLVRILPNEINITRSFWLTTHQDAHSLARIQAVSEFLV 282


>gi|254522080|ref|ZP_05134135.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
 gi|219719671|gb|EED38196.1| transcriptional regulator [Stenotrophomonas sp. SKA14]
          Length = 321

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 124/283 (43%), Gaps = 6/283 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GSF+ AA +  L    ++  ++ LE E+ ++LF R  R L LT +G+
Sbjct: 4   FDDLQLFVRTAALGSFSQAAREADLLPGQVAAAVARLERELDLRLFVRTTRSLRLTGEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  EV   L   Q  +Q    +  G L+++   D G+NLL   L  F   +P +++
Sbjct: 64  LYLPYAQEVLATLREGQARVQGEDTELHGTLQLSAPSDFGRNLLLPWLSAFRAAHPRLRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
            L L ++  D+  D  D AIR+      +S +   L+        A+P YL+    P  +
Sbjct: 124 HLRLSDEVADVFRDPVDVAIRIGH-FDDASYVALPLLEGNRRVLAASPGYLQRRGTPTRL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H+ + +  L  +  + ++      R    P    L  +    + ++ V G GI  
Sbjct: 183 DELREHDCLVY-QLSGRAYDRWS-FDVEGRRSVIPVRGPLVCDDADVVRRWAVAGEGITY 240

Query: 244 LPDYIVKDNPNLVR--IMEDVITPSFTVYFCYPEALKNTGKLK 284
                ++++    R  ++ D +  S  +    P   + +  ++
Sbjct: 241 KSWLDLREDVQAGRLQLLLDGVGSSIPLQLVCPHRKQFSPAVR 283


>gi|120599374|ref|YP_963948.1| LysR family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146292629|ref|YP_001183053.1| LysR family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120559467|gb|ABM25394.1| transcriptional regulator, LysR family [Shewanella sp. W3-18-1]
 gi|145564319|gb|ABP75254.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           CN-32]
 gi|319425933|gb|ADV54007.1| transcriptional regulator, LysR family [Shewanella putrefaciens
           200]
          Length = 301

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 126/297 (42%), Gaps = 13/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S T A+++LH++  +IS+QI  LE  +G  LF R  + + LT++  
Sbjct: 8   LNALRAFEAAARLQSMTLASKELHVTHGAISKQIRILEEYLGFALFVRLHKKVGLTDEAQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L +   +L+  S +P   L I     L  N L   +++F  L+P + +
Sbjct: 68  RYLPHVQAALQTLSSATGDLRRQSTRPQ-TLAINVLPSLTINWLIPRMEQFKSLHPHLYV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +  +D +    D AIR    I    +   KL+   +    AP       +  +I 
Sbjct: 127 DLSIGDFAVDFNQGRYDIAIRSSTVIPK-GVNYIKLMDEDLCLVCAPSL---APKLKTIA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +++   L+         + D+ W   V   + + +     V  +  + Q    G G AL+
Sbjct: 183 DINHVTLL--KHTTRPELWDY-WAKKVGLVLTQEQ--TFGVEHFYMLSQAAASGMGAALI 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P + +++   N +LV   +      +  Y   P++     K++AF +++      ++
Sbjct: 238 PRFFIEEQLSNGSLVIPFDAPFISPYAYYLLTPKSPSLPLKVQAFIDWLLEIFAPYR 294


>gi|315182710|gb|ADT89623.1| Hypothetical transcription regulator [Vibrio furnissii NCTC 11218]
          Length = 327

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 135/298 (45%), Gaps = 13/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            DK+  F VV ++GSF  AA++  +S ++ SR +  LE  + ++L  R  R L  T+ G 
Sbjct: 13  LDKILFFCVVMQTGSFKAAAQRQGISAAAGSRWVKELEETLSVELIKRSTRQLAATQAGQ 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   + +  +++T    +Q  S +  G++R+++T    +  L   + E++ L+P +  
Sbjct: 73  LLYERFAPMIGEIDTLCEAVQNLSEQQQGEIRLSSTPLFARQYLTKIVAEYMALHPKVHF 132

Query: 125 QLILDNKDIDISMDYADCAIRL-----RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++ ++  + D      D A R       +P++ S LI+++L++  ++  A+  YL     
Sbjct: 133 KIFIEAGEFDPLT--IDFAFRALATYDGEPVEDSLLIRKRLLSEPLYLCASERYLAEAGI 190

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + Q L  H  +    L+      F      ++P        L+ ++   ++      +
Sbjct: 191 PTTPQALKAHRCLYARTLLGGNRWCFE---RDEQPEIVTIRDALECDNSEMLLHLAQQSA 247

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           GIA LP  +V+    +  L  +M      SF ++  Y        +  +F+ ++  + 
Sbjct: 248 GIAYLPHSLVEPCLRSGELHHVMPQYRCASFDIFLYYRPRHPMPERCASFKRYLLERV 305


>gi|323528879|ref|YP_004231031.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385881|gb|ADX57971.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 299

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 126/293 (43%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G 
Sbjct: 7   LNALRAFESSARHLSFTRAALELNVTQAAVSQQVRSLEERLGTALFKRLPRGLAMTDEGL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L  V ++ + ++E    + +         L +          L   LK F   +P +++
Sbjct: 67  ALRPVLTDAFDRIEAVLKQFEGGHFHE--VLTVGVVGTFAVGWLMPRLKSFREAHPFVEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+ +N  +D++ +  D AIR        SL   +L+   +     P   +   +P    
Sbjct: 125 RLLTNNNLVDLATEGLDFAIRFGDGTWPGSL-ATRLLDAPLALLCTPEIAERLSKP---A 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  +  +W A     I    I     +S   +++  + G+GIAL 
Sbjct: 181 DLADETLL----RSYRPDDWSSWFAAAG--IAPRPIRGPVFDSSRLMVEAAMQGAGIALA 234

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +         LVR   D+   + + +  + +    +  +  F  ++  +A
Sbjct: 235 PALMFDHEINTGRLVRPF-DIEVHAGSYWLTWLKGKPMSPAMLLFSQWLIKEA 286


>gi|77360179|ref|YP_339754.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76875090|emb|CAI86311.1| putative transcriptional regulator of the LysR family
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 311

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 125/298 (41%), Gaps = 10/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D L++   VA   S T AA +  +  ++ S  I  +E  +G +LF R  R L L+  
Sbjct: 1   MQIDDLKLILKVAEFRSITLAAAKCDMRTATASAAIKRVELALGSELFIRTTRHLRLSAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    LE  +  L+    +  G+LR+A + D G+NL+   + E +  YP +
Sbjct: 61  GERYIPQCEQALAVLEQAKQNLKGEHDEIEGELRVALSSDFGRNLVIPWIDELMDNYPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++  + + ++D   D  D A+R   P   +++   K+  +     A   YL     P  
Sbjct: 121 SLRTHISDSNVDFYRDSVDIALRYGSP-SDTNMYGFKICNVPRLLCATQEYLIAHGSPNH 179

Query: 183 IQELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             EL++H  + +   D+I    E  +  +     +   R S    N    + ++CV G G
Sbjct: 180 PDELNRHQGMFYQLQDIINNSWEFTDGQSKFKVKMQGKRAS----NDGDLVRRWCVAGKG 235

Query: 241 IALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A+     + D+     +V +M +    S  ++   P     T  ++  R+    K R
Sbjct: 236 LAVKSALDIADDLLADRVVTVMPNYQHVSGELWLICPSRQSITPAVRLLRDVCREKCR 293


>gi|317402802|gb|EFV83346.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 306

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 122/295 (41%), Gaps = 11/295 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L+ F V AR  SFT AA++L ++Q ++S+Q+  LE  VG++LF R  +GL LTE G
Sbjct: 7   SLTDLQAFEVAARHSSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLRIRQGLVLTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                       ++E   +EL     +  G L +      G   L   L  F+ L PDI 
Sbjct: 67  RSYLTKIQAGLGQIEAATVELIAHQGQG-GTLNLTCMPTFGARWLIPRLTAFMRLRPDIH 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +   +  D S    D A+R  + I   S     +V   +    +P  +         
Sbjct: 126 VEFLPHRQGYDFSSPELDAAVRFGEGIWPGSG-ADYIVGREILPVCSPRLIP--GGCSVP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  + L+     +    + F       R   E      + + Y  + Q    G G+AL
Sbjct: 183 ADLLAYPLLHHTSALEGWRDWFEQAGCDTRRSLE----GARFDQYALLSQAAAAGFGVAL 238

Query: 244 LPDYIVKDNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +P  +++D     ++   +  P       Y CYPE   N   L+AFR ++   +R
Sbjct: 239 IPRCLIEDELRDGKLAVAIQLPIRARMGYYLCYPEQKANLPTLQAFRTWLMEVSR 293


>gi|299886639|emb|CBI83291.1| LysR family transcriptional regulator [Pseudomonas sp. ATCC19151]
          Length = 316

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 118/295 (40%), Gaps = 6/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D LRVF   AR  SFT AA +L  +Q ++S+QI  LE ++  +LF R  RG+ LT+ G 
Sbjct: 9   LDLLRVFEAAARHLSFTAAAVELGTTQPAVSQQIQRLEKQLATRLFDRVYRGIELTDAGR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L     E    ++     +   S      L++AT        L   L  F    PDI +
Sbjct: 69  VLFLHVQEGLQAIQAGLEAVGARSQHE--VLQVATDFAFAAYWLMPRLHRFHEANPDIDV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+  ++ +++     D AI               L    +   A+P  L     PL   
Sbjct: 127 SLVTSDRTMNMLRSEVDIAIAFGDGRFKHG-DALLLFREEVFPIASPRLLAGRATPLPAA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L +  L+     +     D++ L         P    L+ ++Y  ++Q  + G G+A+ 
Sbjct: 186 ALAELPLLHLKPEVRTRWFDWSSLFRELGISQSPPSGALRFDNYTLLIQAAIAGQGVAIG 245

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             Y+V D      L  ++E  +      Y   PE  +    +K F +++  +  D
Sbjct: 246 WRYLVDDLLEQGLLAPLLEGRVCSDLGYYLVQPERKRRARMMKCFVDWLQHELGD 300


>gi|170700817|ref|ZP_02891807.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134265|gb|EDT02603.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 300

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 118/289 (40%), Gaps = 11/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSFT AA++L ++  +ISR +  LE  +G  LF RH R + LT+ G 
Sbjct: 8   LNSLRAFEAAARLGSFTLAADELCVTHGAISRHVQQLEAWLGRPLFERHNRRVELTDAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    + ++     +      +    LR++         L   L  F + +P I++
Sbjct: 68  AYLAEVGASFDRIALATAQHFGQGQQR--VLRVSAPATFSLRWLVPKLSSFQVAHPAIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N+ I+   D  D  +R   P      +  + ++       AP  L+  R   +  
Sbjct: 126 RLSTSNEPIEKLRDKVDLIVR-GGPQAIDGYVADEFLSEVRLPVCAPKLLEG-RPLRTPA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+          E   WLA        PR S L +  +   +Q  + G G+A+ 
Sbjct: 184 DLAGFTLLHAATYPGMWPE---WLAAAGHANLVPRHS-LTLEHFYLTLQGALDGLGVAMG 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V D+     LV+       P +  +     A  +   ++AF++++
Sbjct: 240 PIALVADDIAEGRLVQPFSAPALPPWRYFTYVAAARADDEAVRAFKDWL 288


>gi|197121986|ref|YP_002133937.1| LysR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171835|gb|ACG72808.1| transcriptional regulator, LysR family [Anaeromyxobacter sp. K]
          Length = 312

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 120/294 (40%), Gaps = 11/294 (3%)

Query: 1   MSFDWDKL---RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M    D+L     F  +  +GS + AA QL  SQ +ISR++  LE  +G++L  R    +
Sbjct: 1   MKATTDRLALAETFVRIVDAGSLSAAALQLGTSQPTISRRLHALEAALGVRLLQRSTHAI 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             TE G +      E+       + EL+    +P+G LR+      GQ  L G + E+L 
Sbjct: 61  HPTEAGQRYVARARELLGAWRGLEAELRGDGDEPAGHLRVVAPHAFGQQQLLGPVVEYLR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            YP + ++  L +  +    D  DC + +  P +  +++ RK+  +     AAP  +   
Sbjct: 121 RYPALSVEWRLHDGPVRFVEDGVDCCVSVDAP-EGEAVVVRKIHEVQRIVVAAPSLVPGR 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
               +         + +  L+P                          +S  ++ Q    
Sbjct: 180 ----APSRPAALAALPWLALVPYYRNTVRLEGARGATATIRIRPRFVTDSLFALRQAASS 235

Query: 238 GSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G G AL  D+IV ++     LV ++     P+  VY  YP+A     +L+AF  
Sbjct: 236 GLGAALASDWIVAEDVAAGRLVHLLPAWRGPTLPVYVAYPQARFYPARLRAFVE 289


>gi|254227439|ref|ZP_04920871.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|151940051|gb|EDN58877.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
          Length = 322

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 62/283 (21%), Positives = 114/283 (40%), Gaps = 8/283 (2%)

Query: 12  YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTS 71
             +    S   AA++L+ S + +SRQ+  LE  + ++L  R  R   LT  G + ++   
Sbjct: 30  VALCEERSIAGAAKRLNCSNAHVSRQLKQLEEILSVQLIQRTTRQFNLTYDGLRFYQQVK 89

Query: 72  EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK 131
           ++    E    E   ++   SGKLRIA +   G  LL   L EF L +P + +++I    
Sbjct: 90  QLLEGAEQI-NEQVMANEIVSGKLRIAASASFGAALLSQTLIEFRLQHPQVSVEVIFTET 148

Query: 132 DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL 191
            +D+     D A            +  +L T+H    A   YL +     + ++L     
Sbjct: 149 PLDLIEAGFDIAFYFTD-TPPEGYVGHQLRTLHCKPIAHRSYLADKPNVSTPEDLGDLEH 207

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
           I +        +         +       S L  N   S++   + G G+A+L ++ + +
Sbjct: 208 ILYKSRDLGLDKWTFTHKQTQQQCSIELESTLSFNLVQSMLDATLAGCGVAMLDEFALAE 267

Query: 252 -----NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRN 288
                   LV ++ D  T +   +Y  YP+      + +AF +
Sbjct: 268 LEPAQKEQLVSLLPDWQTDAILPLYLLYPKREHLPRRTRAFID 310


>gi|116694124|ref|YP_728335.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528623|emb|CAJ94970.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 326

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 12/294 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+    F  V   G+FT AAEQL   +S +S  ++ LET +G KL  R  R + LT+
Sbjct: 4   TIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTD 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  ++R  + ++ +L   + E      +  G LRIAT  + G   L G +   L  +P 
Sbjct: 64  AGKAVYRDVAPLFARLREIRQETLAREERVQGVLRIATPYEFGAQQLGGVICRTLAAHPA 123

Query: 122 IQIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + + + +    +D   D  D A + +   +  S  + R++  +    +AAP    +    
Sbjct: 124 LDVAVEITQGLVDPIRDGFDVAFVVVDTDLPDSGTVARRIYHVERGLFAAPALAASLPAQ 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGS 239
           L  ++L     +T          D  W  T D   +  P    +Q ++    +Q  + G 
Sbjct: 184 LRPEDLANMPTLTTPG-------DTVWEFTRDGQTVSVPIRPRMQTHNAELRLQGALAGL 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L     +       LVR++ D   P   V+   P+      K++AF   I
Sbjct: 237 GIARLSVIYCEAEIAQGRLVRVLPDYPLPPLRVFALLPDRRLQPRKVRAFMEAI 290


>gi|146305106|ref|YP_001185571.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145573307|gb|ABP82839.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 317

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 125/294 (42%), Gaps = 11/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LRVF   AR  SFT AA +   SQ +IS+QI  LE ++ ++LF R  RGL LTE 
Sbjct: 8   ISLDSLRVFESAARLLSFTAAANEQGSSQPAISQQIKRLEQQLAVRLFDRVHRGLVLTEA 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L R   E  H L++    +          L++AT        L   L+ F  L+P++
Sbjct: 68  GELLLRYVQEGLHSLDSGLQAVVARQQHE--VLQVATDFAFAAYWLMPRLQRFHQLHPEV 125

Query: 123 QIQLILDNKDIDISM-DYADCAIRLRKPI--QSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + L+   +D+  ++    D AI           SL+   L    +    +PH L     
Sbjct: 126 DVSLVTTERDLGGNLPGEIDVAISFGDGRCKHGESLL---LFGEEVFPVCSPHLLHGREP 182

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             S   L +  L+            ++ +         P    L+ ++Y  ++Q  + G 
Sbjct: 183 VDSAALLARLPLLHLRPEARANWFAWDGVFRALGIAEPPSAGALRFDNYTLLIQAAIAGQ 242

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G+A+   Y+V +      LVR+++  I  ++  Y   PE  +    ++ F +++
Sbjct: 243 GVAIGWRYLVDELLAQGLLVRMLDTSIRSAYGYYVVMPERKRRARLVRCFVDWL 296


>gi|56461591|ref|YP_156872.1| LysR family transcriptional regulator [Idiomarina loihiensis L2TR]
 gi|56180601|gb|AAV83323.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR]
          Length = 285

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 19/282 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L+ F       S + AA +LH++ S+IS+Q+  LE + GI LF+R+ R L+LTE G 
Sbjct: 6   IRSLKAFTRTVELNSMSAAANELHMTVSAISQQLQRLENDNGISLFHRNTRSLSLTEAGQ 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++   ++       Q    + + +P G+++I   +  G  LL   LK+    + ++  
Sbjct: 66  VFYQSCLDMLAIAAKNQERWDQLTNQPQGQIKIIAPVGFGGGLLSEPLKQLQHEFANVSF 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + ++ ID+    AD AIR+  P+  S+L  R L   HM    A  +        S  
Sbjct: 126 QLHMTDEPIDLITAGADLAIRIG-PLADSTLYARHLADWHMVPCIAAEHPAAENSIKSFD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +   I     +P            ++   +P++    +N+  +++Q  + G G ALL
Sbjct: 185 DLPEGCFIGHIPSLP------------NKDFPKPKV---LLNNMQTVVQLTLDGVGYALL 229

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           P   +K   ++  L+R++ +     ++V+   P       K 
Sbjct: 230 PQPEIKHYIESGRLLRLLPEWEGSPYSVHAVLPIKDNIPAKT 271


>gi|227112262|ref|ZP_03825918.1| LysR family transcriptional regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 305

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 123/292 (42%), Gaps = 6/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D++ L+VF  V    SF  A++ L +  S++SR IS LE  + + L  R  R + LT+ 
Sbjct: 5   LDFNTLKVFIAVVERDSFVGASKVLEMPTSNVSRCISQLEDRLNLHLIERSTRHMKLTQA 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +   LE T+ EL    ++  G LRI    ++G  LL   + +F   + D+
Sbjct: 65  GLLLYSRAKPLMDALEQTETELTLRQMQLKGPLRICIPNEIGPALLGSVIADFACQHSDL 124

Query: 123 QIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +I  + +   ++   D  D AI + R  +  S  I R LVTI     AAP  ++      
Sbjct: 125 EISCVTNLSGLESLRDDLDLAIIVSRGQMDDSDYIARHLVTIPCTIVAAPSVIQRYGILS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            IQ+ ++   IT  + +      + ++               +VNS     +  V G G 
Sbjct: 185 RIQQFEELPCITTVNALKGA--PWQFVNKNGGFETIKVKGHYRVNSGEMAGRAAVAGVGF 242

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A+L     +   D+  L+ I  +       ++  Y        K +A   +I
Sbjct: 243 AILSKQACQPYIDDGRLIEIKFEQPPAPLQLFALYSNRRYLPAKTRALIEYI 294


>gi|167590163|ref|ZP_02382551.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 313

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 136/299 (45%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F  V  SGSF  AA ++ +++S++++ ++ LE  +G++L  R  R L+LT
Sbjct: 1   MDDRLGGIAEFVEVVESGSFAAAALRIGVTRSAVAKIVARLERRLGVRLLQRTTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +     V  +L  T+  L     +PSG+LRI+  +  G+  +   ++  +  +P
Sbjct: 61  DEGLVYYEQCRRVLAELGETEAALDAGRREPSGRLRISAPVLFGRQCVAPVMRRLVERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++++   ++  D+  D  D A+R+   + +++L+ R L    M   A+P YL     P
Sbjct: 121 RLEVEMSFSDRIADLVNDGFDVAVRVGPLVDTTALVCRPLGMQQMGICASPAYLAQHGRP 180

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
              ++L  H  I +   G + P  + D +  A   R     R   LQ  +  +     + 
Sbjct: 181 AGFEDLASHVGIAYARGGQVTPWRIVDADGDARELRVSARLRFDDLQAIADAAAAGAGLA 240

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 LP +++     +  L  +M+     S  V+   P A +   K++A  + +  +
Sbjct: 241 -----WLPCWLMAPYLRDGRLALVMDSDSVGSAEVFAVRPNARQVPSKVRAAIDALVDE 294


>gi|113869587|ref|YP_728076.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528363|emb|CAJ94708.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 304

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 123/294 (41%), Gaps = 12/294 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L  F   AR GSFT AA++L ++Q +ISR I+ LE   G  L  R+A  L LT+ G KL
Sbjct: 3   ELHAFATAARLGSFTRAADELCVTQGAISRAIARLEAHFGQPLLQRNAHRLVLTDAGRKL 62

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
               +E    +E     L+  + +    L ++    L    L   L +F   +P+I++  
Sbjct: 63  LEAVAEPLATIEHASATLRAGNRRHH--LTLSVVPTLASVWLVPRLPDFHRRHPEIRLDF 120

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP---LSI 183
           +   +D D+S    D AI   +  +   L    +V   +     P   +  RE     S 
Sbjct: 121 VPYQRDEDLSGPSPDAAILAGEAGKWPGLQADYVVGRELVPVCHPDRARARREAGRWQSP 180

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL    L+ +    P   +  NWL     P   PR+S    +    ++Q      G+A+
Sbjct: 181 AELLDEPLL-YHTTAPANWQ--NWLQAAGVPNAAPRLST-AFDQVSILIQAVRADIGVAV 236

Query: 244 LPDYIVKDNPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L   +V+D     R+      P       + C P+  ++   L  FR+++   A
Sbjct: 237 LQRCLVRDEIAAGRVTAPFDLPITLQRGYFLCAPKERRDHPALNCFRDWLLETA 290


>gi|332525626|ref|ZP_08401781.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332109191|gb|EGJ10114.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 308

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 111/273 (40%), Gaps = 7/273 (2%)

Query: 26  QLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQ 85
           +L +S  + S  +  LE+ +G +LF R  R L  T +G             ++  +  L 
Sbjct: 35  ELAVSPQAASAALKRLESALGFRLFVRSTRSLRPTPEGLAFLDACERGLALIDQARERLA 94

Query: 86  ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIR 145
                 +G++R++   DLG+N++   L+ F   +P I+ +L L ++  +++ +  D A+R
Sbjct: 95  AGREALAGRIRLSMPSDLGRNVVLPWLQAFREQHPGIEFELQLTDRVAELAREAVDVALR 154

Query: 146 LRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
             +P   + L+   L         A+P YL     P   Q+L +H  +++          
Sbjct: 155 YGEP-ADTQLVAVALAPHNRRVLCASPAYLARHGRPAQPQDLVQHRCLSYRLSDRPHERW 213

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
                   R +     + L+ +   ++ +  + G GIA      V D+     LV + ED
Sbjct: 214 R--FERDGRELAVEVHAALRCDDGDAVRRMAIFGEGIAYKSGLDVADDLRRGALVALCED 271

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
                  ++    +       ++  R+F+  + 
Sbjct: 272 WQGEPAPLFLACADRSVLRPAVQRLRDFLAERL 304


>gi|293395317|ref|ZP_06639601.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291422001|gb|EFE95246.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 320

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 9/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + LR F  VAR+G F   A+    S S +S  +  LE ++G++L  R  R +  T
Sbjct: 11  MKSDLNDLRAFVAVARAGGFREGAKSSGTSASGLSEAVRRLEAQLGVRLLNRTTRSVMPT 70

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L    +   +++      +     KP+G L++   + + + +L   +  FL  YP
Sbjct: 71  EAGRDLLERLTPALNEVAAALDSVNHFRDKPAGTLKLNVPVSVARLVLPALVSPFLAAYP 130

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DIQ++++ +   +DI     D  IR  + ++   +I   +        A A+  YL    
Sbjct: 131 DIQLEIVTEESFVDILAAGCDAGIRYDERLEQD-MIAVPIGPRSQRFAAAASSAYLNRHG 189

Query: 179 EPLSIQELDKHNLI--TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            P    EL  H  I   F        E       V   +  P I  L   +    +   +
Sbjct: 190 RPQHPDELLNHACIRGRFPSGTLATWEFAQAEQRVRVDVDGPLIVRL-GGAADLAIDAAL 248

Query: 237 LGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G+G+ +L +  ++       L  ++E         Y  YP        LKAF +++
Sbjct: 249 AGTGVVMLFEEWLRPYLSRGELEPVLEPWWPAFSGPYLYYPGHRLVPAPLKAFISYV 305


>gi|158422919|ref|YP_001524211.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158329808|dbj|BAF87293.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 296

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 118/299 (39%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +L    +VAR G F  AA +L LS +++S  +  LE  +G++LF R  R ++LT
Sbjct: 2   MQGSLTELDAVLMVARHGKFRTAALELGLSTTALSNAVGKLERTLGVRLFNRTTRSVSLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +     +     +      ++     PSG LRI       + +    +  FL +YP
Sbjct: 62  EAGQQFVAQVAPALRDIHEAMEVVRSQKATPSGTLRINAFPTAAREIFSWLVLPFLRMYP 121

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCRE 179
            + I ++ + + +DI     D  +R    +    +I   L         A P YLK    
Sbjct: 122 KVHIDIVTEGRLVDIVAGGFDLGVRSADLVPVD-MIALPLGGGRRNVVVATPRYLKAHGI 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLG 238
           P+  Q+L  H+ +            + W    D       +   + ++         +  
Sbjct: 181 PVMPQDLAGHSCLRVRLPNGTI---YRWPFEKDGQSVHIAVEGPITLDEASLARAAALAS 237

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            G+ L  +  V+D+     LVR++ED       +   YP     T   KAF +F   +A
Sbjct: 238 IGLTLAMESDVRDDIEAGRLVRVLEDWTPALPPLSLYYPSRRNPTAAFKAFVDFARRQA 296


>gi|167031115|ref|YP_001666346.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166857603|gb|ABY96010.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 299

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 111/291 (38%), Gaps = 8/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D LRVF   AR   FT AA  L  +Q ++S+Q+  LE ++G +LF R  RG+ LTE 
Sbjct: 8   LSLDTLRVFEAAARLRGFTAAALALGTTQPAVSQQVKRLEAQLGTRLFDRIYRGIELTEA 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +   +    ++    +      +    L++AT        L   L+ F   YP +
Sbjct: 68  GQVLFQQVHQGLQAMDDGIAQATGRGQRE--VLQVATDFAFAAFWLMPRLQRFHEAYPQV 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L+   +   +     D A+             R L    +    +P       +PLS
Sbjct: 126 DVSLVTGERSQGMLRPDIDVAVLFGDGRFHQG-ESRWLFDEEVFPVCSPRL--TDGKPLS 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              L +  L+           D+  +         P    L+ ++Y  ++Q  + G G+A
Sbjct: 183 AVALQRLPLLHLKGEQASRWFDWAGVFRGFGVASPPAAGQLRFDNYTLLIQAAIAGQGVA 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +   ++V    +   L R +E  +      Y   P   +    ++ F  ++
Sbjct: 243 IGWGHLVDKLVEQGLLCRPLEGSLRSERGYYAVLPPRKRRGALIERFVGWL 293


>gi|134295180|ref|YP_001118915.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134138337|gb|ABO54080.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 305

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 121/297 (40%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L++ +S +SR+++ LE  +G++L  R  R  T+T+ G
Sbjct: 7   DLNDLYYFVQVVEHGGFAPAGRALNMPKSKLSRRVALLEARLGMRLIQRSTRRFTVTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +     +P G +R++  + L  +L    +  F++  P ++
Sbjct: 67  QTYYAHCRAMLVEADAADEAIALLHEEPRGIVRVSCPVALLDSLAGAMIAAFMVACPHVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S L  R L        A+P  L+    P  
Sbjct: 127 IHLEATNRRVDVVGEGIDVAIRVRPPPLEDSDLALRVLAERGQCLVASPALLREHGAPAV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +    +    +P+    +                 L     L++    V G G+ 
Sbjct: 187 PADLTRMP--SLDHGLPQAAHVWRLRGPDQAHAEIHHQPRLVTGGMLALRAAAVAGVGVV 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +V+D      LV ++ D       V+  +         ++A  +F+  +  +
Sbjct: 245 QLPTMMVRDELARGELVNVLPDWAPRREIVHAVFASRRGLLPGVRALLDFLAARFAE 301


>gi|332529241|ref|ZP_08405205.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332041464|gb|EGI77826.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 309

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 124/298 (41%), Gaps = 8/298 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D   LR+   VA  G    AA +  L  ++ +  I  LE ++G +LF R +R L  T 
Sbjct: 14  RLDLGALRLALRVAELGGVAAAAREQGLLNATATAAIRRLEQQLGARLFMRSSRALRPTP 73

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G    +        ++    EL+    +  G LR+    DLG  +L+  L EF+ L+P 
Sbjct: 74  EGEAFLQRCLAALSAVDEAAAELRAPLTQVRGLLRLGVPTDLGTQVLRPLLDEFMGLHPQ 133

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREP 180
           +Q+ L + ++  D++ +  D AIR      +   I R LV   H    AAP YL+    P
Sbjct: 134 LQLDLAIGDRVADLAREPVDAAIRYGD--AAPGQIARPLVPDNHAILVAAPTYLRRAGTP 191

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L  H +I               L    +P+          +S L   Q+ V G G
Sbjct: 192 KRLDDLAAHEMIGLRIASRPAHRWA--LLDSGKPVTLKARVRRSADSGLVARQWAVAGCG 249

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IAL     V  +    +L+ ++  V +  + +          + +++A  +F+  + +
Sbjct: 250 IALKSRLDVAADLAAGHLIHVLPQVHSQPYPLVLALARGTHLSARMRALGDFLQRRLQ 307


>gi|239817938|ref|YP_002946848.1| LysR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804515|gb|ACS21582.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 305

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 126/298 (42%), Gaps = 8/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS     +  F     +GSF  AAE+LH+++S++++ I  LE  +G +LF R  R  +LT
Sbjct: 1   MSPRLQGIEEFVAAVEAGSFARAAERLHVTRSAVAKSIGRLEARLGTRLFLRTTRSQSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   +     V  +L+  +     +    +G +R++    LG+  +   L      +P
Sbjct: 61  EEGHGYYERCRRVLAELDAAEAMADAARSTAAGLVRLSMPAMLGRLKVGPLLLALARRHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L  +++ +D+  D  D AIR  +   S+ L+ R +    M   AAP YL     P
Sbjct: 121 GLSLELSFNDRRVDLVEDGLDLAIRSGELADSAELVARPVGVQWMALCAAPAYLAERGRP 180

Query: 181 LSIQEL---DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            S+ EL     H  + +       +  + +     R +     S L+ +S   +++  + 
Sbjct: 181 GSVAELGASPSHEAVFYAR--DGQVSPWRFHDADGRLVEVVLPSRLRCDSAEVLLEAAIG 238

Query: 238 GSGIAL---LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G G+A               LVR+ E+     F +      +     K +   +++  
Sbjct: 239 GMGLARLPAWLAADALAAGTLVRVFEEPRPFGFALNVIRSRSRYLPHKTRVVVDWLAE 296


>gi|15889362|ref|NP_355043.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157208|gb|AAK87828.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 300

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 111/294 (37%), Gaps = 11/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L+ F   AR  S T A+ +L+++  ++S QI  LE  +G++LF+R  R + LT +G
Sbjct: 7   SLKGLQAFEAAARYRSVTLASNELNVTPGAVSLQIRELEARLGVQLFFRKPRSIQLTREG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +      +  +     EL   S      L ++ T       L   L  F   +P + 
Sbjct: 67  ERYYGALRTAFRMMREATAELTARSEIT--VLTLSCTPTFAVQWLMPRLPSFQQQHPHVD 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ + N+ +D S D  D A+R     +   L   + +        AP  L+        
Sbjct: 125 VRISVTNRLVDFSRDDVDLAVRHGFG-RYEGLESIRFIDDSTLPVCAPQLLEKYGPLREA 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L    L+   +      E   WL        +     + ++S  ++      G GIAL
Sbjct: 184 GDLKSVPLLHDENRN----EWRRWLEAAGASEVDASGGTVFIDSNGAL-DAAKAGHGIAL 238

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               +V        L+      +  +   +  YP  + +   L    +++  +A
Sbjct: 239 TRRSLVSRELVEGALIAPFGTDMASTLAYFLVYPRRMLDNPDLVTLIDWMLSQA 292


>gi|302063123|ref|ZP_07254664.1| transcriptional regulator, LysR family protein [Pseudomonas
           syringae pv. tomato K40]
          Length = 278

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 111/267 (41%), Gaps = 11/267 (4%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
           ++SR+++ LE ++G++L +R  R ++LT +G         +    E  +  L+  +   S
Sbjct: 2   AVSRRLAALENDLGVRLVHRTTRSVSLTPEGEVFLPHAKTMLQASEAARATLKADAGTAS 61

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G LR+      GQ ++   L E +L  P + I L L +  +DI+    D AIR+   I+ 
Sbjct: 62  GILRVTAPSVFGQTVIMPLLPELMLENPALSIDLTLSDSIVDIAGLGIDVAIRIA-TIRD 120

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
           S+L+ R L        A+P YL     P  +  L  H  I    +               
Sbjct: 121 SALVARSLAPNPRVVCASPDYLMRRGTPTVLDYLRHHPCIALHGMPYWS------FTRDG 174

Query: 213 RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRI-MEDVITPSFT 268
            P+          NS  ++      G G+A+L  + ++      +L +I  ED +    +
Sbjct: 175 EPVTIRAQGSFSANSVEAVRTASKQGLGLAMLTYWDIQQEIREGSLRQIDFEDALPEQLS 234

Query: 269 VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +    P   +   +++ F + +  + +
Sbjct: 235 ITAMLPTRQRVPHRVRLFVDRLEAELQ 261


>gi|218460415|ref|ZP_03500506.1| LysR family transcriptional regulator [Rhizobium etli Kim 5]
          Length = 297

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 121/275 (44%), Gaps = 8/275 (2%)

Query: 24  AEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIE 83
           A +LH   +++SR I+ LE  +G+ L  R  RGL+LTE+G      +  +  +L+  + +
Sbjct: 23  ARRLHAPLATVSR-IADLERHLGVPLVLRTRRGLSLTEEGRAFVAASRRILDELDAAERQ 81

Query: 84  LQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCA 143
                    G L +   +  G+  L     EFL   P I ++L L ++ I+++ +  D A
Sbjct: 82  ASGDHGALRGGLHVTAPVAFGERHLLPIALEFLKEQPIINLRLTLVDRQINLADEQVDVA 141

Query: 144 IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCME 203
           +R+   +  S+LI  ++ ++     A+P YL     P   +EL  H+ I+F         
Sbjct: 142 LRIGH-LTDSALIATRVGSVRRVICASPDYLARRGVPRQPEELVGHDGISFQGFATAPEW 200

Query: 204 DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIME 260
            +            P+   L VN+  + +Q  + G GI  +  Y + D   +  L  ++ 
Sbjct: 201 RYRRDGPAFSIEPRPK---LAVNTTEAAVQAALAGIGIIRVLSYQISDQLRSGALQELLT 257

Query: 261 DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +       V   +  A   + K++ F ++I  + R
Sbjct: 258 EFAPEPLPVNVMHGPADPLSQKVRCFLDWIVPRLR 292


>gi|115359555|ref|YP_776693.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284843|gb|ABI90359.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 327

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 118/293 (40%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT  G 
Sbjct: 29  FELMETFVRIVEAGSLSAAAAQLHTTQPTISRRLQALERSLGMRLLQRTTHAMRLTVDGE 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+       + +L+ +  +P G LR+A     GQ      L  FL  YP + +
Sbjct: 89  RCFTRAKELLTNWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVEPLARFLRDYPRVSV 148

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D      DCAI++ +P    S++  +L  +     AAP  L     P    
Sbjct: 149 EWLLQDEVRDFVGSGIDCAIQVGEP-TDPSVVAIRLSKVPRFVVAAPSVLNGADVPADPD 207

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     +         +   + +    R I       +   +  ++    +LG G  + 
Sbjct: 208 ALAALPWLALRTYYRTELTLTHTVTGDTRRIA--MRPRITTANLYALRSAALLGVGACVG 265

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +++ D+     LV +  D       VY  YP A     +L  F + +    
Sbjct: 266 SSWMLADHLARGELVHLAPDWYAAPLPVYMTYPHAQFYPSRLVRFVSMMREAV 318


>gi|264678214|ref|YP_003278121.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262208727|gb|ACY32825.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 278

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 16/288 (5%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F   AR  S T AA++LH++Q+++S+ I  LE  +G  LF R  RGL LT++G  L  V 
Sbjct: 2   FDAAARHQSLTRAAQELHVTQAAVSQHIRNLEERLGKPLFRRLPRGLALTDEGQALWPVV 61

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
           ++ + ++E +  ++ E   +P   L +          L   L +F  L+P I ++L+ +N
Sbjct: 62  AQSFERIEQSLQQVAE--PRPREILTVGVVGTFAIGWLIPRLSQFQQLHPYIDLRLLTNN 119

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
             +D++ +  D A+R        +   + L+   +     P   +  REP    +L    
Sbjct: 120 NRVDLAGEGLDAAVRFGDGAWHGT-HAQMLLRAPLSPMCTPMLAQQLREP---ADLALQT 175

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           L+       +  E   W A +D+    P       +S L++ +    G+GIALLP  + +
Sbjct: 176 LL----RSYRTQEWEGWFAGLDQAA--PLARGAMFDSSLTLAEAAAQGAGIALLPARMFE 229

Query: 251 ---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
                  LVR        +   +  Y ++ + +  L+ FR ++  + +
Sbjct: 230 HMLQQGRLVRPFA-HEVDTGAYWLTYLKSRQASAALQTFRQWLMTQLQ 276


>gi|170720657|ref|YP_001748345.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169758660|gb|ACA71976.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 318

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 130/298 (43%), Gaps = 15/298 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    +  T  G+ 
Sbjct: 8   DQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDSLESAVGSRLFTRSTHAVRATPAGNA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL+ YP + + 
Sbjct: 68  FAERARRIIEELRLARAEAVSLSSAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVH 127

Query: 126 LILDNKDIDI---SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+    +   D  +R   P+  + L+   L  +   A A+P YL +   P  
Sbjct: 128 LRLIDSFVDLHGSHLGEVDLVLRAG-PLADTRLVATPLAYMVRVACASPAYLASRGIPAC 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGSG 240
             EL  H+ + +  L P     F W   VD      R S ++   N+  +++   + G G
Sbjct: 187 PSELPGHDGLDWDGLAP----PFAWRFNVDGQSRLYRPSRMRMAANNAETLLFGALAGLG 242

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKN--TGKLKAFRNFIFLK 293
           +A LP +++ D      LV +  D   P+      Y   L +    + +    F+  +
Sbjct: 243 VAHLPTWLISDYLLRGELVPLFCDNGLPAAETSGIYALRLAHETNSRSRLLLEFLKSR 300


>gi|116248780|ref|YP_764621.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253430|emb|CAK11818.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 300

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 115/293 (39%), Gaps = 8/293 (2%)

Query: 1   MSF---DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M F   +  +L +F  + +  SF  AA+ L ++ S++S  +  LE  +G++L  R +R +
Sbjct: 1   MQFKRNEIHELSIFLAIVQYRSFRKAADHLEVTASALSHSMKALEQRLGVRLLNRTSRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             T  G+ L    S     + +   +L       +G +RI    D    LL+  +  F  
Sbjct: 61  APTAAGTALAEKISAGLELINSGLEDLNGHYQGGAGSIRINVLKDAAVLLLRPAIPVFQQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P++++++ +D++ +D++ D  D  IR    I    +       +   A AAP YL++ 
Sbjct: 121 RFPNVELEVAVDDQFVDVTADGFDAGIRYSGTIPEDMIAVPLTPPLKWVAVAAPDYLRSH 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P+  ++L+ H+ I       +  +         R I  P    L        +   + 
Sbjct: 181 GRPVMPEDLNSHHCIRIRTGRGQIYKWEFERGDDRREIDVP--GALISGETDLAINAALE 238

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           G+G+    + +         L  ++    +        Y    +    + A  
Sbjct: 239 GAGLCYCLERLASPYVSAGRLEVVLPKWASIGPPFSMYYSSRRQLPFGVDALI 291


>gi|260459993|ref|ZP_05808246.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259034204|gb|EEW35462.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 300

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 124/290 (42%), Gaps = 6/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + VF      GSF  AA  L LS   + + +  LE  +G++L  R  R  +LT+ G 
Sbjct: 4   LESMAVFIRAVDLGSFAAAAVALDLSGPMVGKHVRFLEERLGVRLINRTTRRQSLTDFGR 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +     V  + E       +   +P GKLR+      G++ +   L +    YP +++
Sbjct: 64  AYYERCRVVLAEAEAADALAADQLSEPRGKLRVTMPAHFGRHCVTPVLLQMARQYPMLEL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L L ++  D++ D  D AIR  +    + +I R++    M   AAP YL    EP  I+
Sbjct: 124 DLSLSDRFADLAEDGYDLAIRTGELDDKAGVIARRVARQGMVVCAAPSYLGIHGEPRRIE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP-RISCLQVNSYLSIMQYCVLGSGIAL 243
           +L  H  I +  L           A   +P+ E      L+++   +I    V+G GIA 
Sbjct: 184 DLADHQSIVYRRLGQVVQPWL--FAREGQPLQEILPTGRLRLDDLDAIADAAVVGMGIAW 241

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LP ++V++      L  ++ D     +  +  + +      K++   + +
Sbjct: 242 LPWWLVRERIRAGALAVLLPDQPRHLYDCHALWLQTPHLPLKVRLAVDAL 291


>gi|134292360|ref|YP_001116096.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135517|gb|ABO56631.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 327

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 117/289 (40%), Gaps = 6/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +  +GS + AA QL+ +Q ++SR++  LE  +G++L  R    + LT  G 
Sbjct: 29  FELMETFVRIVEAGSLSAAAAQLYTTQPTVSRRLQALERSLGMRLLQRTTHAMRLTVDGE 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+       + +L+ +  +P G LR+A     GQ      L +FL  YP + +
Sbjct: 89  RCFTRAKELLAGWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVAPLAQFLRDYPRVSV 148

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D      DCAI++ +P     ++  +L  +     AAP  L     P    
Sbjct: 149 EWLLQDEVRDFVGSGIDCAIQVGEP-SDPGVVAIRLTKVPRFVVAAPSVLDRAAVPADPD 207

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     +         +   + +    R I       +   +  ++    +LG G  + 
Sbjct: 208 ALAALPWLALRTYYRNELTLTHAVTGDTRRIAI--RPRVTTENLYALRSAALLGVGACVG 265

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +++ D+     LV +  D       VY  YP A     +L  F   +
Sbjct: 266 SSWLLADHLARGELVHLAPDWQASPLPVYLTYPHAQFYPSRLVRFVAMM 314


>gi|107022506|ref|YP_620833.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116689455|ref|YP_835078.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170732761|ref|YP_001764708.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105892695|gb|ABF75860.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116647544|gb|ABK08185.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|169816003|gb|ACA90586.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 311

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 118/276 (42%), Gaps = 7/276 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L +S++++S++I+ LE   G+ L  R  R + LT+ G  L   T + +  +      +
Sbjct: 30  QRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTDAGQTLVDSTRDAFESIGQHFARV 89

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           ++ + +P G LR+   + LG+  +  +L +FL  +P +QI+L L ++   ++ +  D AI
Sbjct: 90  KDLAGEPRGLLRVTVPVALGRQQVVPHLPDFLRQHPGVQIELDLSDRLHSLTQEGFDLAI 149

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R       +  +  KL        A+  YL     P    EL  H+ + +          
Sbjct: 150 RHTTTAPQTH-VAWKLCDTRSLLVASRDYLDARGAPRHPSELVDHSCLCYLRDNEPAAWS 208

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F       + +  P       N+  ++ +  + G GIALLPD+  + +     LV +++ 
Sbjct: 209 FEPDGRRRQRVSVPVRGSFAANNSEAMREAALGGLGIALLPDFSARRDLDAGRLVALLDG 268

Query: 262 VITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
                     ++   P +      ++A    +  + 
Sbjct: 269 WRPSGAFGDHIFAIRPYSPVVPSAVRALVRHLRERL 304


>gi|27375595|ref|NP_767124.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27348732|dbj|BAC45749.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 305

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 122/298 (40%), Gaps = 13/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIK-LFYRHARGLTLTEQG 63
            + +R F   AR GSF  AA +L ++  ++S+QI  LET +G   LF R  R + LT  G
Sbjct: 13  LNAVRAFEAAARLGSFKEAAGELGVTHGAVSQQIRLLETWLGPPALFRRSVRRVVLTPAG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQ-ESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           + L    +    ++     + +      P+  LR+          L   +  F   +PDI
Sbjct: 73  AALLAEFAPALDRVSAAVQQHRKRRGEAPAAVLRVNALATFSLRWLLPRMTRFRAEHPDI 132

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L   N  +D   +  D  IR   P        R L++       +P  L     PL+
Sbjct: 133 EVRLSTSNDPVDALPELFDVVIR-GGPDTFHGFASRFLLSEQRLPVCSPALLAKL--PLT 189

Query: 183 -IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + +L +H L+    +        +WL        E   + L  + +   +Q  + G G+
Sbjct: 190 EVADLSRHTLLHVTSMPRL---WRDWLTDAGESALE-GAASLTFDHFYLTLQAALDGLGV 245

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           A+ P  ++ D+     LV    ++  P+ + +  +PE   +      F +++  + R 
Sbjct: 246 AMGPTALIADDLAAGRLVTPFPNISLPARSYFAYFPEGRDDDPHRAVFCDWLEQQGRQ 303


>gi|323528566|ref|YP_004230718.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385568|gb|ADX57658.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 304

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 114/298 (38%), Gaps = 11/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F  V R  S+  AAE+LH++ ++I + I GLE  + ++LF+R + G   L LT+
Sbjct: 7   LNALRAFEAVGRHLSYVAAAEELHVTPAAIGQMIRGLEETLNMELFHRSSSGASRLVLTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
                       +  L      L+ S  +    + +     L        ++ F   YP 
Sbjct: 67  AARAAMPELQAGFELLAQAVERLKASKARI--TVTVTVPPALADKWFLHRVERFQRKYPS 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             +++ L  K +D + +  D  IR     Q   L    L+        +P  L+      
Sbjct: 125 YDLRIDLSLKLVDFTAERVDAGIRYGTG-QWPDLAATFLMRDEFFPVCSPALLEGEHPLR 183

Query: 182 SIQELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  +L+ H LI        P      +W+              LQ+N   + +   + G+
Sbjct: 184 TPADLNHHPLIHDISMRTAPAFPTWRSWVQKTGNAGVVDCDRGLQINDSAAAIHTAISGN 243

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL    +V+ +     LVR   +        Y  + +       + AF+ ++  +A
Sbjct: 244 GVALGRTCLVERDIAEGRLVRPFPEAQPCDLAYYVVHRKDNGGEPAVAAFKAWLLEEA 301


>gi|152981649|ref|YP_001353360.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281726|gb|ABR90136.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 316

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 123/295 (41%), Gaps = 11/295 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   +  F ++ R+GS   A  +  + +++ISRQI+ LE  +G++LF R  R +  TE 
Sbjct: 2   IDIKLIESFVLLMRNGSLGRAENEGGIPKTTISRQIAKLEEILGVQLFLRSTRRIAPTEA 61

Query: 63  GSKLHRVTSEVYHKLET----TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLL 118
           G+  +     +   L       Q ++Q  S    G L + T   L  + +   L  +L  
Sbjct: 62  GTAFYAHCERIIADLNAGLATAQTDVQNLSEGLRGDLYLLTNNHLSTSFVSRVLGLYLDS 121

Query: 119 YPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           YP +   L L  ++I    D  DC +   +P    +L+ + L  +    YA+P YL+   
Sbjct: 122 YPGVTCHLDLVGEEITSIPDNVDCYVC-SQPPNQPNLVAKLLGNLTYRLYASPEYLRRNG 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P   ++L++H  I               L + D        + +  N Y     + + G
Sbjct: 181 TPTRPEDLEQHPRIVLTTSPRAGGWH---LRSQDASFHSQPRTIVTTNDYWVTKTFAIDG 237

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI LLPD+  +   D   L+ ++ D       VY  Y +      KL+A  + +
Sbjct: 238 YGIVLLPDFFTRPEIDAGILIPLLPDWHADKVPVYCVYQQQRYMGRKLRALVDLM 292


>gi|115351366|ref|YP_773205.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115281354|gb|ABI86871.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 311

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 118/276 (42%), Gaps = 7/276 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L +S++++S++I+ LE   G+ L  R  R + LT+ G  L   T + +  +      +
Sbjct: 30  QRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTDAGQTLVDSTRDAFESIGQHFARV 89

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           ++ + +P G LR+   + LG+  +  +L +FL  +P + I+L L ++   ++ +  D AI
Sbjct: 90  KDLAGEPRGLLRVTAPVALGRQQVVPHLPDFLRQHPGVHIELDLSDRLHSLTQEGFDLAI 149

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R       +  +  KL        A+ HYL     P    EL  H+ + +          
Sbjct: 150 RHTTTAPQTH-VAWKLCDTRSLLVASRHYLDARGAPRHPSELVDHSCLCYLRDNEPAAWS 208

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F       + +  P       N+  ++ +  + G GIALLPD+  + +     LV +++ 
Sbjct: 209 FEPDGRRRQRVSVPVRGSFAANNSEAMREAALGGLGIALLPDFSAQRDLDAGRLVALLDG 268

Query: 262 VITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
                     ++   P +      ++A    +  + 
Sbjct: 269 WRPSGAFGDHIFAIRPYSPVVPSAVRALVRHLRERL 304


>gi|239834322|ref|ZP_04682650.1| HTH-type transcriptional activator ampR [Ochrobactrum intermedium
           LMG 3301]
 gi|239822385|gb|EEQ93954.1| HTH-type transcriptional activator ampR [Ochrobactrum intermedium
           LMG 3301]
          Length = 303

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 119/294 (40%), Gaps = 13/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +RVF   AR  SFT AA +L ++Q+++S QI  LE  VG  LF R  R + LTE G 
Sbjct: 16  LSAIRVFESAARHASFTRAAAELGMTQAAVSYQIKILEERVGAPLFLRMPRQVELTELGK 75

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    +E +  +      L+E +    G L I+       N L   L  F + +P + +
Sbjct: 76  QLAPAITEAFETMRNAFASLREDAE---GTLSISVLATFAANWLAHRLGSFQMRHPSLAV 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  ID +    D AIR     +   L   +L+        +P             
Sbjct: 133 RLDTSDSLIDFATTNVDIAIRSGFG-KWPGLEAHQLIKASFTPMLSPALAATIGGVKEPA 191

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIG-EPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L +  +I   D   K   +   +     P   + R+    +       +    G G+ +
Sbjct: 192 DLLRLKIIDASDPWWKIWFEAAGIENPQLPGNTQNRLGAQHIEG-----RAAAAGQGVGI 246

Query: 244 L-PDY--IVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L P +  +      L++  + +       +  YP++ + T K++AFR +I  + 
Sbjct: 247 LTPAFHQMEIATGQLIQPFDILGDDGRAYWLVYPKSRRTTPKIRAFREWILSEL 300


>gi|171317980|ref|ZP_02907153.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171096823|gb|EDT41698.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 327

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 117/293 (39%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT  G 
Sbjct: 29  FELMETFVRIVEAGSLSAAAAQLHTTQPTISRRLQALERSLGMRLLQRTTHAMRLTVDGE 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+       + +L+ +  +P G LR+A     GQ      L  FL  YP + +
Sbjct: 89  RCFARAKELLTNWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVEPLTRFLRDYPRVSV 148

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D      DCAI++ +P    S++  +L  +     AAP  L     P    
Sbjct: 149 EWLLQDEVRDFVGSGIDCAIQVGEP-TDPSVVAIRLSKVPRFVVAAPSVLNGADVPADPD 207

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     +         +   + +    R I       +   +  ++    +LG G  + 
Sbjct: 208 ALAALPWLALRTYYRTELTLTHTVTGDTRRIA--MRPRITTANLYALRSAALLGVGACVG 265

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +++ D+     LV +  D       VY  YP A     +L  F   +    
Sbjct: 266 SSWMLADHLARGELVHLAPDWYAAPLPVYMTYPHAQFYPSRLVRFVAMMREAV 318


>gi|170719952|ref|YP_001747640.1| LysR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757955|gb|ACA71271.1| transcriptional regulator, LysR family [Pseudomonas putida W619]
          Length = 338

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 125/290 (43%), Gaps = 7/290 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-ARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 32  ALNWDDLKFFLEVARTRKASSAAKRLSVDYTTVSRRISSLEGALGTLLFEKSRTNGFVLT 91

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 92  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFVTPQLSHFVDAYP 151

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +    
Sbjct: 152 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQDYLDDHAPI 210

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             + +L  H  I++ D +    E       +           L+  S ++     + G G
Sbjct: 211 NQVSDLIGHPFISYVDDLAFSSELLYLANLIPNASAH-----LRSTSVIAQYTAALQGRG 265

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A+LP ++   +  LV ++ + I  +   +    E L+   ++    ++I
Sbjct: 266 LAILPCFLAAQDARLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYI 315


>gi|152981642|ref|YP_001352457.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gi|151281719|gb|ABR90129.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 304

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 124/296 (41%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR+F   A S SF  AA +L  S  +I+R +  LE  VG  LF+R+ RG+ +T
Sbjct: 1   MLNRLEMLRLFCAAADSNSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQIT 60

Query: 61  EQGSKLHRVTSEVYHKLETT-QIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           E G+ L     E+   ++       ++S    +G +RI     +G++ L  +L   +  +
Sbjct: 61  EFGTHLAEHAREMVTGVDGLFHHSDRQSDKDLAGLVRITAPSIIGRHHLLQSLLPLINRH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P ++++L + N   D+     D  +R+ + ++ SS + R +  I  +    P  +    +
Sbjct: 121 PGLRLELGVTNLVADVVDKKIDIGVRIGQ-LRDSSFVARSVAKISFYIVGTPELVAARGK 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P + Q+L K    T   +       + W    D  +  P  S    +         + G 
Sbjct: 180 PKTPQDLSKLP--TTALMDGNTGRIWPWYF-ADNHLLTPTASTFVTDDPEVECNAVLAGV 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G   L  +  +    +  LV ++++     + +Y   P+      +++   + I  
Sbjct: 237 GYGQLSSHQAEPYIRSGQLVTVLDEYQPEPWDMYVYRPQRGPVPARIRLVFDRIVE 292


>gi|300718083|ref|YP_003742886.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299063919|emb|CAX61039.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 331

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 118/297 (39%), Gaps = 10/297 (3%)

Query: 1   MSF---DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M     D+  L+ F VV R  SF  AA +L LS S+IS  I  +ET +  +L  R +R +
Sbjct: 17  MKMERVDFADLQAFLVVLRCRSFKLAAIELGLSSSAISHAIRRVETRLDARLLNRTSRSV 76

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
           + T  G ++    SE +  + +    +        G LR+    D    L+   LK F  
Sbjct: 77  SPTALGLEVAEKLSEGFDVISSALDTVNAPGRSRFGVLRLNVFADAAAQLIVPALKAFAE 136

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +PD+++ ++++++ +DI+ +  D  +R    +    +      T       +P Y+K  
Sbjct: 137 QWPDVRLTVVVEDRPVDITSEGFDAGMRYGHLVPEDMVAVALTDTQRWIVVGSPEYVKRH 196

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             P +  EL +HN +    L+      F W     D          + +    + +   +
Sbjct: 197 GVPTTPAELSEHNCL---QLLLGNNASFRWEFDGADGVYSMSVPGAITLKDTSTTIAAAI 253

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            G G+A + +  V     + +L+ ++          +  Y         L+   N I
Sbjct: 254 DGIGLAYVLESRVDAELASGSLINVLPSHACQGEPFHMYYSSRRYVHPALRELINII 310


>gi|70729856|ref|YP_259595.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344155|gb|AAY91761.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 297

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA +L+ + ++++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAARRLNTTHATVARHIEAVEKALGTALFVQHAQGYELTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ +SS  P GK+R+  T  LG   L   +      YP +
Sbjct: 62  GEALLKHAEAMENVALLVQEEITQSSA-PLGKIRVGVTEGLGVKFLASRMVGLFERYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P     L+ RKL    +  YA+  YL       S
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERPSAD-MLVTRKLTDYRLALYASQAYLDRAPPLRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  I + D +    E    L  ++     P++      S ++  +    G GIA
Sbjct: 180 REDLGRHAWIGYVDDLLFSQE----LMFLNSFCRNPQV-VFHSTSVIAQQEAARSGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +LP Y+   +P LV ++    +     +      L  + +L+   +++  +    +
Sbjct: 235 VLPCYMAAADPQLVPLLP-AESIQRAYWISTRRELHKSVRLRVVWDYLVEQCAAQQ 289


>gi|16273646|ref|NP_439350.1| DNA-binding transcriptional activator GcvA [Haemophilus influenzae
           Rd KW20]
          Length = 297

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 119/290 (41%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +GI LF R  R L LTE G 
Sbjct: 8   LNSLKSFESAARYLSFTKAADELCVTQAAVSHQIKLLEXFLGIDLFKRKNRSLELTELGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L      L      P   L I+     G   L  +L EF  LYP I++
Sbjct: 68  AYFVDINKILRRLNEATERLLTLKTDPH--LNISVPQTFGIQWLVPHLSEFNQLYPQIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI         +L   +L   ++   A+P  L      +  +
Sbjct: 126 RLTGVDQDEGLLNKEIDLAIYYGLG-NWQNLQVDRLCEENLLILASPELLAEN-PIIQPE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH LI             N L   D  I +  +     +     +Q  + G GI L 
Sbjct: 184 DLKKHTLIHI-HTCDNWQAMANHLQLDDLNIQQGPL----FSHTFMALQAAIHGQGIVLA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +     +N +L  ++   +    + Y        +  K++AFR +I 
Sbjct: 239 NRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQAFRQWII 288


>gi|254238368|ref|ZP_04931691.1| hypothetical protein PACG_04506 [Pseudomonas aeruginosa C3719]
 gi|126170299|gb|EAZ55810.1| hypothetical protein PACG_04506 [Pseudomonas aeruginosa C3719]
          Length = 312

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 117/293 (39%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F  VAR  SFT AAE+L L+QS++S+Q++ LE ++   LF R  + L LT  G   
Sbjct: 12  ALQCFEAVARHLSFTRAAEELSLTQSAMSKQVAQLEEQLQHALFRRVRKRLQLTPAGELY 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  ++E        S    +  LR+AT    G   L   L  +   +P+I + L
Sbjct: 72  LAEVRRILQQVE-LSTRFLLSYGGETEVLRVATPPTFGARWLIPQLNGWRHRHPNIHLDL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             + +  D+   + D A     P         +L    + A  AP  L        + E 
Sbjct: 131 RQELEPDDLRQGHCDLAFFFG-PGTLPGAECIRLFGEQLVAVCAPSLLPAGG----LDEP 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +   +       +     +W A+++R   +      + +++   ++    G G+ALLP 
Sbjct: 186 TQLAGLVLLQNASRAEAWHDWFASLERNC-QGCYRGPRFDTFYMCIRAAQAGCGVALLPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++V++      L       +      Y  YPE      K++ F  ++  +   
Sbjct: 245 FLVEEELAEGKLAIAWPHALPSQEAYYLAYPEHAAEVPKVRHFIEWMVERLEQ 297


>gi|15600107|ref|NP_253601.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107104013|ref|ZP_01367931.1| hypothetical protein PaerPA_01005086 [Pseudomonas aeruginosa PACS2]
 gi|116053063|ref|YP_793382.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254244193|ref|ZP_04937515.1| hypothetical protein PA2G_05038 [Pseudomonas aeruginosa 2192]
 gi|296391751|ref|ZP_06881226.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313109911|ref|ZP_07795840.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
 gi|9951191|gb|AAG08299.1|AE004904_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115588284|gb|ABJ14299.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126197571|gb|EAZ61634.1| hypothetical protein PA2G_05038 [Pseudomonas aeruginosa 2192]
 gi|310882342|gb|EFQ40936.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa 39016]
          Length = 312

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 117/293 (39%), Gaps = 10/293 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F  VAR  SFT AAE+L L+QS++S+Q++ LE ++   LF R  + L LT  G   
Sbjct: 12  ALQCFEAVARHLSFTRAAEELSLTQSAMSKQVAQLEEQLQHALFRRVRKRLQLTPAGELY 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  ++E        S    +  LR+AT    G   L   L  +   +P+I + L
Sbjct: 72  LAEVRRILQQVE-LSTRFLLSYGGETEVLRVATPPTFGARWLIPQLNGWRHRHPNIHLDL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             + +  D+   + D A     P         +L    + A  AP  L        + E 
Sbjct: 131 RQELEPDDLRQGHCDLAFFFG-PGTLPGAECIRLFGEQLVAVCAPSLLPAGG----LDEP 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +   +       +     +W A+++R   +      + +++   ++    G G+ALLP 
Sbjct: 186 TQLAGLVLLQNASRAEAWHDWFASLERNC-QGCYHGPRFDTFYMCIRAAQAGCGVALLPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           ++V++      L       +      Y  YPE      K++ F  ++  +   
Sbjct: 245 FLVEEELAEGKLAIAWPHALPSQEAYYLAYPEHAAEVPKVRHFIEWMVERLEQ 297


>gi|220922493|ref|YP_002497795.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219947100|gb|ACL57492.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 300

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 6/293 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            WD LR     AR+G+ + AA  L +  S++SR ++ LE  VG ++ +R A GLTLT  G
Sbjct: 6   SWDHLRSLLAFARAGTLSSAARSLGVKHSTVSRHLAELERSVGSQIVHRAADGLTLTTAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L      +   L   Q ++        G +RI      G   L   + +    +P + 
Sbjct: 66  ERLMNAAEGMEVLLRQAQDDIAGRDRLIQGTVRIGAPDAFGSIFLAPRITQLAAQHPALN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           IQL+   +  +++   AD A+ L  P Q   L+ +KL    +  YA+P YL   R   ++
Sbjct: 126 IQLVAMPRVFNLTKREADLAVALAIP-QHGRLLAKKLADYGLGLYASPAYLSRSRPIRTL 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  I + D +    E  ++L  V   I     +  Q +S L+ +   V G G+ +
Sbjct: 185 DDLRGHQFINYIDELITIAE-LDYLDEVSPYIN----ARFQSSSILAQLHATVSGFGLCV 239

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           LP ++ K  P+LV ++   +    T +    E      +++    FI+   R 
Sbjct: 240 LPYFLAKQYPDLVNVLGREVVLKRTWWLLVHEDQNELSRVRLVHQFIYDTVRQ 292


>gi|78061436|ref|YP_371344.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969321|gb|ABB10700.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 308

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 109/289 (37%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 18  QALRAFESAARLASFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGVTLTADGQC 77

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 78  LYEAVRLSLDTLRGATATLRARRE--HGALTIVTDFGFATYWLMPRLAGLKRVMPDVDVR 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+ D AI        S    R L    +    +P +          + 
Sbjct: 136 VVTS-QDYDAQRDHGDIAILFGDGHWPSCTAAR-LFPESVTPVCSPAFRDAHPHVARAEH 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    ++                +  NSY  ++   +LG G+AL  
Sbjct: 194 LLAMPLLHVQPTRPERWLSWSGWFDAHGLDTAAAARGVTFNSYALVIHAALLGEGVALGW 253

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +   +  LV++++  +  S   +   P           FR ++ 
Sbjct: 254 SPLVDELVASGQLVKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 302


>gi|170735127|ref|YP_001774241.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169821165|gb|ACA95746.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 343

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 122/288 (42%), Gaps = 11/288 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AAE+L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 60  LLVFEAAARHESYTRAAEELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 119

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L  F   +  + + L 
Sbjct: 120 AELSGALGRIRGATLQ-AMSHQAGAGTLRLATLPTFGSKWLLPHLHGFYAAHSGVTVHLH 178

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR-EPLSIQEL 186
                ID   D  D AI +        L   +L    + A A P   +  + +  +    
Sbjct: 179 SRIGAIDFLNDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIAPPDTGRGRKADARTPAWA 237

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            K  L+          E F+      R +        ++ S+  ++Q    G GI L+P 
Sbjct: 238 AKQTLLGVTSNQQAWAEWFSHYRLDHRQMRIG--PSFELTSH--LIQAVRAGMGIGLVPK 293

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            +V+D      LV I  D IT   + Y  YP   +    L AFR+++ 
Sbjct: 294 VLVEDELSRGELVSI-GDAITSQRSYYLVYPPGNETLPSLVAFRDWLL 340


>gi|94314585|ref|YP_587794.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93358437|gb|ABF12525.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 306

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 118/279 (42%), Gaps = 6/279 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            W+  R F  V   GS + A   L ++Q ++ R I  LE+ +G+KLF R   G   TE  
Sbjct: 10  SWEWYRTFLQVLEVGSLSAAGRALGITQPTVGRHIDSLESALGLKLFTRSFDGFAPTEAA 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + +       +           G +R+  +  +G  +L   L      +P++ 
Sbjct: 70  HELKPYAASIAATAAALRRVASSHGAGVRGTVRLTASEVIGAEVLPPILAALRDAHPELV 129

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+L N+  D+    AD AIR+ +P+Q  +LI R +  I +  +A   YL+    P S 
Sbjct: 130 VELVLSNQPDDLLRREADIAIRMFRPVQ-GALIARHVGGIEIGLHAHSRYLQAHGVPGST 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H LI F           +      R          + +S L+ +     G GI +
Sbjct: 189 SELSRHALIGFDQENDFIRRLQSKFKPFWRDSL-----AFRSDSDLAQLGAIRAGFGIGV 243

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
               +   +P LVR++ +  + +   +    E L++  +
Sbjct: 244 CQAALAARDPQLVRVLPEQFSVTLDTWVAMHEDLRDNTR 282


>gi|260776722|ref|ZP_05885617.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607945|gb|EEX34210.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 302

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 130/297 (43%), Gaps = 12/297 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V AR  S++ AAE+L +SQ+++S++I  LE  +G KLF R  R + LTEQG  L 
Sbjct: 11  LRYFEVAARLNSYSRAAEELFISQAAVSQKIRQLEDGLGCKLFVRDGREMRLTEQGKILF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S  +  + T   ++Q       G L + +T       L   L +F   +P+I I+++
Sbjct: 71  KHVSHGFEHIITGLNQIQS--EPIEGLLCVNSTPSFASRWLLPRLWKFSTQHPNIPIRIL 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ---SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
                 ++    AD AI   + +    + S  +  L    ++ + +PH L          
Sbjct: 129 TSCDAPNLKQGDADLAIWQGEQLDIESNKSFHKEFLFEETIYPFCSPH-LAKSINLKKPS 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    LI +           +W A     + +  +  ++V+++   M+  + G G  L 
Sbjct: 188 QLQACWLIHYES---GGYPWESWFAQAGVSMSKNSVRWMEVSTFDHAMKAVMSGHGACLA 244

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            D +  D      LV+  +  +TP       Y E      +++AF N++  +  D +
Sbjct: 245 SDSLASDYVERGLLVKPFDIGMTPGIQFNLFYSEDSPRKKRIQAFVNWLQGEISDQQ 301


>gi|9909830|emb|CAC04521.1| AmpR transcriptional activator [Ochrobactrum anthropi]
          Length = 291

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 125/295 (42%), Gaps = 12/295 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               + LR F   AR  SFT AA +L ++Q+++S Q+  LET + + LF R  RGL LT 
Sbjct: 5   HLPLNSLRAFEASARHLSFTKAAIELCVTQAAVSHQVKSLETRLNVTLFERLPRGLMLTS 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L     + + ++  T    +    +    LR+     L    L   L++F   YP 
Sbjct: 65  EGETLLPTLKDAFDRIAGTLERFEAGHYREI--LRVGAVGTLAVGWLLPRLRDFQNRYPF 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L  +N  +DI+ +  D AIR         +   +L+   +     P   +  R P+
Sbjct: 123 IDLRLSTNNNRVDIAAEGLDYAIRFGSGAWH-GIDATRLLEAPLSPLCIPELARELRTPV 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H L+       +  E   W          P    +  +S L++M+  + G+GI
Sbjct: 182 ---DLARHTLL----RSYRADEWTQWFVAAGVTGDMPLPRSIMFDSSLAMMEAAMQGAGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL P  +         I++   T     + +    ++   T  + AFR+++   A
Sbjct: 235 ALAPPLMFSRQLLSETIVQPFETTVTMGSYWLTRLQSRTETQAMAAFRDWLTDAA 289


>gi|323525658|ref|YP_004227811.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323382660|gb|ADX54751.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001]
          Length = 296

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 6/279 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +W+  R F  V  +GS + A   + L+Q ++ R I  LE+ +G+KLF R   G   T+  
Sbjct: 7   NWEWYRTFLTVLETGSLSAAGRTMGLTQPTVGRHIDSLESALGLKLFTRSFDGFAPTDAA 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L    + V                   G +R++ +  +G  +L   L      +P++ 
Sbjct: 67  LELKPYAASVAATSAALLRVASSHGSGVRGTVRLSASEVIGIEVLPPILATLRSEHPELI 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+L+L NK  D+    AD A+R+ +P Q + L+ +++  I +  +A   YL     P S+
Sbjct: 127 IELVLSNKVDDLLHREADIAVRMLRPTQDA-LVAKRVGGIELGLHAHERYLAAHGTPKSM 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H LI F           +      R          + +S L+ +     G GI +
Sbjct: 186 DELAGHALIGFDHENAYIRRLLDQFPMFSRAAL-----AFRADSDLAQLGAIRAGFGIGV 240

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
               +   +  LVR++    +     +    E L+ + +
Sbjct: 241 CQSALAARDEALVRVLRGAFSLKMDTWIAMHEDLRESAR 279


>gi|89053252|ref|YP_508703.1| LysR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88862801|gb|ABD53678.1| transcriptional regulator, LysR family [Jannaschia sp. CCS1]
          Length = 306

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 129/294 (43%), Gaps = 7/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VA+ G+ + AAE L +  +++ R I  LE  +G KLF RHARG T TE G
Sbjct: 17  NWDEVRTAFQVAKVGTVSGAAEALGVHHATVIRHIDALEARLGAKLFQRHARGYTATEAG 76

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L  V  +   +       ++    + +G+L I T++     LL   +  F   +PD++
Sbjct: 77  QDLLSVAGQTDDQFTQLAGRIKGRGDEVTGEL-IVTSLGALSPLLVPTIALFQERHPDLR 135

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L+ D +   +    A  AIR  K       I +   T  +   A+  Y+    + L+ 
Sbjct: 136 VRLVSDARLFRLEYGEAHVAIRAGKLPDQPDNIVQPFFTQTLRLVASQSYIDRFGQ-LTG 194

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + ++ H  +   +  P+    F WL               + +S +++ +  + G GI  
Sbjct: 195 ENVEAHRFVGSTEETPRA-PYFKWL----NETVPSSTIYFRASSMVAVKEAVLAGIGIGF 249

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  +      +LV ++  +   +  ++      L  T K++ F   +  + + W
Sbjct: 250 VASWDRDRTDDLVEVLPPLEDWTAKIWLVTHMDLHRTAKVQTFVKHLKDQVKTW 303


>gi|71281636|ref|YP_270096.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71147376|gb|AAZ27849.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 305

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 132/292 (45%), Gaps = 6/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +++F  VAR+   + AA++L +  S++SR++  LE  +  KLF R   G  LT  
Sbjct: 1   MNWDDIKIFLEVARAERLSTAAKRLTMDASTVSRRLHKLEESIATKLFDRTQDGHVLTPD 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L     ++    +     +  ++ +  G +RI  T  LG   +  NL      +P I
Sbjct: 61  GEMLLTSACKMEQDAQHALSSIHNNNEENCGLVRIGVTEALGNFFVSPNLLTLQQQHPSI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY----LKNCR 178
            + L+L ++ + IS + AD AI + +P  +S ++  KL    +  Y    Y    LK   
Sbjct: 121 DVHLLLFSRYVKISRNEADIAIAVERPKSTSMIVS-KLCDYKLQLYVHQDYLDHNLKQYP 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           + +++  L +H  +T+ D +    +  +++  +DR +     +     S +S       G
Sbjct: 180 QGITLDNLAEHKWVTYVDNL-IFTDQLSYIKELDRYLSGELKANFSSTSIISQYFAIKSG 238

Query: 239 SGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI +LP ++   + +L+++    IT S + +       K    +     ++
Sbjct: 239 LGIGILPCFLADQDKSLIKLHSQDITISRSFWLVTHPESKRLSHVNTVWQYL 290


>gi|319784932|ref|YP_004144408.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170820|gb|ADV14358.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 300

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 125/292 (42%), Gaps = 5/292 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + VF      GSF  AA  L LS   + + +  +E  +G++L  R  R  +LT+
Sbjct: 1   MDRLESMAVFVKAVDLGSFAAAAVALDLSGPMVGKHVRFIEERLGVRLLNRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     V  + E       E   +P GKLR+      G++ +   L +    YP 
Sbjct: 61  FGRAYYERCRVVLAEAEAADALAAEQFSEPRGKLRVTMPAHFGRHCVTPVLLKLAHQYPM 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ L L ++  D++ D  D AIR         +I R++    M   AAP YL+   EP 
Sbjct: 121 LELDLSLTDRLADLAEDGYDLAIRTGTLDDKVGVIARRVARQGMVVCAAPSYLRIHGEPQ 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            I++L  H  I +  L  + ++ + ++      +       L+++   +I      G G+
Sbjct: 181 RIEDLADHQAIVYRRL-GQVVQPWLFVREGQPTLEITPTGRLRLDDLDAIADAAADGMGL 239

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           A LP ++V+D      L+ ++ D     +  +  + +      K++   + +
Sbjct: 240 AWLPWWLVRDRIQAGALMALLPDQPRYLYDCHALWLQTPHLPLKVRLAVDAL 291


>gi|330829333|ref|YP_004392285.1| LysR family transcriptional regulator [Aeromonas veronii B565]
 gi|328804469|gb|AEB49668.1| Transcriptional regulator, LysR family [Aeromonas veronii B565]
          Length = 296

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 138/292 (47%), Gaps = 15/292 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           + +  +F  V  +GS T AA+ L ++ S++S+ IS LE+ +G+ L +R  R L+LTE G 
Sbjct: 4   FRRYAIFAAVVEAGSMTGAAKSLGMTPSAVSQHISQLESLLGLPLLHRSTRRLSLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            + +    +   L  T++ L E      G++RI   + +    L   L   L  +P + I
Sbjct: 64  VVWQGCRALQQTLSETELRLSEVRDALLGEVRITAPVGMAGQPLALALSPLLQAHPGLTI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+I D++  D+  +  D A+R+   +  S+L+ RKL    M   AAP YL     P    
Sbjct: 124 QIIADDEKRDLIAERIDVALRVG-TLPDSTLVARKLGQTRMLLCAAPAYLARKGTPRMPD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGI 241
           +L  H+ +  GD++       N L   D   GE R+   + +  N+ L + Q+ + G GI
Sbjct: 183 DLATHDWLC-GDMLG------NGLLLQDEKGGEHRVRFKAKVLCNNVLPLRQFALAGQGI 235

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +L P+  + ++     L+ ++         ++   P+  +   K++     +
Sbjct: 236 SLQPEGEIGEDLAQGRLLELLPGFRVAPMEIHAITPQ-REIPEKVRRVVEAL 286


>gi|157375840|ref|YP_001474440.1| regulatory protein, LysR [Shewanella sediminis HAW-EB3]
 gi|157318214|gb|ABV37312.1| regulatory protein, LysR [Shewanella sediminis HAW-EB3]
          Length = 286

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 129/287 (44%), Gaps = 11/287 (3%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V  SGS T A+  L +  S+ISR +S LE ++   L  R+ R +  T  G KL     E
Sbjct: 2   AVYESGSITSASVDLGVMPSTISRSLSRLELKLDTSLIMRNTRKIEFTNDGLKLLAHAKE 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +   +   + E + +   PSG LR+     +  +L+   +K++L LYPD+ I+L    + 
Sbjct: 62  ITASVNNIEHEFRTNDSTPSGTLRVNGASPVLVHLVCPIIKKYLQLYPDVNIELQNSEEI 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           IDI    AD A+R+  PI  SS     + +      A+  YL+    P SI++L  H  I
Sbjct: 122 IDIIESKADIALRVA-PITESSYHVTHIGSSKRRLLASSEYLRRYGFPSSIEDLKNH--I 178

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGE-PRISCLQVNSYLSIMQYCVLGSGIALLPDYIV-- 249
             G   P  +  +       + +   PR+     +S   + +  + G+GIA + D++   
Sbjct: 179 LLGLEGPSILNTWPIEDGKGKKLKICPRVVA---SSGEVLRKLTLSGAGIACISDFMTKS 235

Query: 250 -KDNPNLVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            ++N  L+ ++ E  +     +          + K+  F +F+  + 
Sbjct: 236 DRNNGKLIEVLKEQTVHDKRDISAVCYRGTSPSAKVSTFIDFLKDEL 282


>gi|222080845|ref|YP_002540208.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725524|gb|ACM28613.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 298

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 125/303 (41%), Gaps = 22/303 (7%)

Query: 1   MSF--------DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR 52
           M+             L  F   AR+GS T AA +L L+QS++SRQI  LE ++G++LF R
Sbjct: 3   MNMITPRRFLPSLSLLSAFEAAARTGSVTVAARELDLTQSAVSRQIKALEGQLGVELFVR 62

Query: 53  HARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNL 112
             + + LT  G    R   E   ++ +  ++L+ +     G L +A     G   L   L
Sbjct: 63  ERQTIRLTLAGDSYAREIREALRRISSASLDLRANPN--GGTLNVAILPTFGTRWLAPRL 120

Query: 113 KEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPH 172
            +FL   P I I L+      D  +D  D AI    P    + +   L++       +P 
Sbjct: 121 GDFLATNPGITINLVTRLSPFDFRLDSIDAAIHFGHPHWPGAELAF-LMSERTMPACSPD 179

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           +L   R  +   +  +  L+    L  +      WLA    P    R   +  + + +  
Sbjct: 180 FLARHRL-VEPADFLQVPLLH---LTTRPDAWEKWLAANGAPASGVR--GMLFDQFATAA 233

Query: 233 QYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYP-EALKNTGKLKAFRN 288
           Q  + G G+ALLP +++++      LV    + +      Y   P E L     ++ FR 
Sbjct: 234 QAAISGLGVALLPTFLIQEELKRGELVAASPNELESDERYYLACPFERLAYPPLVR-FRE 292

Query: 289 FIF 291
           +I 
Sbjct: 293 WIV 295


>gi|54308401|ref|YP_129421.1| DNA-binding transcriptional regulator DsdC [Photobacterium
           profundum SS9]
 gi|46912829|emb|CAG19619.1| hypothetical D-serine deaminase activator [Photobacterium profundum
           SS9]
          Length = 304

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 117/295 (39%), Gaps = 6/295 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F + A   SFT AAE L L+QS++S +I  LE  +G+KLF R  R + LT++G 
Sbjct: 11  LSGLHCFLIAADQMSFTRAAEVLCLTQSAVSHKIKNLEDSLGVKLFIRQPRKVILTDEGK 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L  V ++ +   +         +++ SG   ++      Q  L   +K F+  YP +++
Sbjct: 71  RLKAVVAQNF--GDIAHEIRDLKTLELSGDFNVSAPPTFAQTWLMPRIKSFIDKYPALRL 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   N  ID   +  DCAI      + + L   KL+   M       Y           
Sbjct: 129 HLRTRNDLIDFQTETFDCAIYFGHG-KYAGLHSEKLMDESMLPVCTHEYALRYNLYDRPD 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L    L+       +   +  W     R            +     +Q    G G+A+ 
Sbjct: 188 NLVMCMLLHDAAPWARAGRNDEWQYWAQRQGITLPEVGCTFDRSDLALQAAERGIGVAMG 247

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               + +      LV   +  +    + Y    + +K++ ++KAF++++  +  +
Sbjct: 248 RMSFIAEQLANERLVIPFDMPVKSPLSYYVVCRQDMKSSPRVKAFQDWLADEIAN 302


>gi|293606907|ref|ZP_06689254.1| glycine cleavage system transcriptional activator [Achromobacter
           piechaudii ATCC 43553]
 gi|292814639|gb|EFF73773.1| glycine cleavage system transcriptional activator [Achromobacter
           piechaudii ATCC 43553]
          Length = 314

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 121/305 (39%), Gaps = 17/305 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + L  F  VA   +   AAE+LHL+ S++S+QI GLE ++G  LF R  RG+ L 
Sbjct: 1   MRLPLNTLPAFRAVAELQNLRAAAERLHLTHSAVSQQIKGLEEQLGFPLFERSGRGIVLN 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G+ L          L+   +    S+     ++R++      Q  L   +  +    P
Sbjct: 61  SAGAALLCSVQSALALLDEGVMAAAASATSSEQRMRVSVLPSFAQRWLLPRMARWRARNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI--HMHAYAAPHYLKNCR 178
            + +++    + +D+  D    A+R  +    + +    L  +   + A A+P    +  
Sbjct: 121 GVSLEIETSQQVVDLVRDGFHAALRFGRG-PWAGVESEPLFDMPLPLIALASPETAASL- 178

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
           E  S + L +  L+   ++        +W       +  P       N    ++Q    G
Sbjct: 179 EDNSPETLARQPLLGEREM------WQHWFNAAG--LNTPVTPVATFNDASMMLQAAEQG 230

Query: 239 SGIALLPDYIVKD---NPNLVRI--MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI L  + +  D      LVR+  M      + T +  YP +L++   L A + ++  +
Sbjct: 231 LGITLGRELLAADALCAGRLVRVSPMSVHYEQTQTYHLVYPPSLRDWAPLVALKEWLHEE 290

Query: 294 ARDWK 298
               +
Sbjct: 291 LERSR 295


>gi|229044162|ref|ZP_04191844.1| Transcriptional regulator, LysR [Bacillus cereus AH676]
 gi|229109849|ref|ZP_04239433.1| Transcriptional regulator, LysR [Bacillus cereus Rock1-15]
 gi|228673601|gb|EEL28861.1| Transcriptional regulator, LysR [Bacillus cereus Rock1-15]
 gi|228725187|gb|EEL76462.1| Transcriptional regulator, LysR [Bacillus cereus AH676]
          Length = 300

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 136/305 (44%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKVLLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  + +       L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKLNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP   +   Y +        + F   + + 
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIKI--ENPTPIIEIGLIYRKDKYMCAATREFIEQLKIT 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|209966610|ref|YP_002299525.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
 gi|209960076|gb|ACJ00713.1| transcriptional regulator, LysR family protein [Rhodospirillum
           centenum SW]
          Length = 297

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 121/292 (41%), Gaps = 6/292 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  V    SFT AA +L +S S++S  I GLE  +G++L  R  R +  TE G +
Sbjct: 7   NDLLAFIAVTEERSFTRAAARLGVSPSALSHTIRGLEERLGLRLLTRTTRSVAPTEAGER 66

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L R       ++E     L      P+G +R+        +LL   L   L  YPDI+++
Sbjct: 67  LFRSAGPRLAEIEAELAALSALRETPAGTVRLTAGEHAATSLLWPALTRLLPRYPDIRVE 126

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           + +DN+  DI  +  D  +RL + +    +  R    + M   AAP        P +  E
Sbjct: 127 VDIDNRLTDIVAERFDAGVRLGEQVAKDMVAVRIGPDLRMVVVAAPACAARRPPPRTPHE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSGIALL 244
           L  H  I F   +P     + W    D      R+   L  NS   I Q  + G G+  L
Sbjct: 187 LTGHECINF--RLPSSGGLYAWEFARDGRELRVRVEGPLVFNSLEMIRQAALAGFGLGYL 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P+ +V  +     LV ++ED   P    +  YP   + T         +  +
Sbjct: 245 PEDMVAADLAAGRLVVLLEDWCPPFPGYHLYYPSRRQPTPAFAVLVEALRHR 296


>gi|78066048|ref|YP_368817.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966793|gb|ABB08173.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 311

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 117/276 (42%), Gaps = 7/276 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L +S++++S++I+ LE   G+ L  R  R + LT+ G  L   T + +  +      +
Sbjct: 30  QRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTDAGQTLVDSTRDAFESIGQHFARV 89

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           ++ + +P G LR+   + LG+  +  +L +FL  +P +QI+L L ++   ++ +  D AI
Sbjct: 90  KDLAGEPRGLLRLTVPVALGRQQVVPHLPDFLRQHPGVQIELDLSDRLHSLTQEGFDLAI 149

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R       +  +  KL        A+  YL     P    EL  H+ + +          
Sbjct: 150 RHTTTAPQTH-VAWKLCDTRSLLVASRDYLDARGAPRHPSELVDHSCLCYLRDNEPAAWS 208

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F         +  P       N+  ++ +  + G GIALLPD+  + +     LV +++ 
Sbjct: 209 FEPHGRRRERVSVPVRGSFAANNSEAMREAALGGLGIALLPDFSAQRDLDAGRLVALLDG 268

Query: 262 VITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
                     ++   P +      ++A    +  + 
Sbjct: 269 WRPSGAFGDHIFAIRPYSPVVPSAVRALVRHLRERL 304


>gi|188592018|ref|YP_001796616.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG
           19424]
 gi|170938392|emb|CAP63379.1| putative transcriptional regulator, LysR [Cupriavidus taiwanensis
           LMG 19424]
          Length = 335

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 123/294 (41%), Gaps = 12/294 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  W+    F  V   G+FT AAEQL   +S +S  ++ LET +G KL  R  R + LT+
Sbjct: 11  TIQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTD 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  ++R  + ++ +L   + E      +  G LRIAT  + G   L G +   L  +P 
Sbjct: 71  AGKAVYRDVAPLFARLREIRQETLAREERVQGVLRIATPYEFGAQQLGGVICRTLAAHPA 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + + + +    +D   D  D A  +    +  S  + R++  +    +AAP    +    
Sbjct: 131 LDVAVEITQGLVDPIRDGYDVAFVIVDADLPDSGTVARRIYHVERGLFAAPALAASLPAQ 190

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGS 239
           L  ++L     +T          D  W  T D   +  P    +Q ++    +Q  + G 
Sbjct: 191 LRPEDLANMPTLTTPG-------DTVWEFTRDGQTVSVPIRPRMQTHNAELRLQGALAGL 243

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GIA L     +       LVR++ D   P   V+   P+      K++AF   I
Sbjct: 244 GIARLSVIYCEAEVAQGRLVRVLPDYPLPPLRVFALLPDRRLQPRKVRAFMEAI 297


>gi|325520452|gb|EGC99556.1| LysR family glycine cleavage system transcriptional activator
           [Burkholderia sp. TJI49]
          Length = 297

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 118/293 (40%), Gaps = 15/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+
Sbjct: 11  LNALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGA 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        L I+TT       L   L +F   +P   +
Sbjct: 71  AYFSDVQRALNAIADATDRLVKRRA----TLTISTTPSFASKWLIPRLAQFTDAHPGFDV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D +      D  D AIR  KP     L    L  + + A  +P  L       S +
Sbjct: 127 RVIADQQLATFRHDGVDLAIRYGKPPFGKHLAAHALFPLDVCAVCSPALLAEH---ASPR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L  H L+     +        +LA +  P+       L+ N     +   V G GIAL 
Sbjct: 184 ALAGHVLLHDAHDLWPA-----FLAALPEPVDVDPHKGLRFNQTSLAIDAAVAGQGIALA 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D +V+ +     L +  +     S   Y  YP   ++   +   R ++  +A
Sbjct: 239 TDPLVERDIAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDGIAVMREWMIRQA 291


>gi|254363174|ref|ZP_04979223.1| LysR family transcriptional regulator [Mannheimia haemolytica
           PHL213]
 gi|261493947|ref|ZP_05990455.1| LysR family transcriptional regulator [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494768|ref|ZP_05991247.1| LysR family transcriptional regulator [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153095068|gb|EDN75619.1| LysR family transcriptional regulator [Mannheimia haemolytica
           PHL213]
 gi|261309585|gb|EEY10809.1| LysR family transcriptional regulator [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310379|gb|EEY11574.1| LysR family transcriptional regulator [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 297

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 121/297 (40%), Gaps = 15/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  +FT AAE L ++Q+++S QI  LE  +G  LF+R  R L LTE G+
Sbjct: 8   LNALKAFESAARHLNFTKAAEDLFVTQAAVSHQIKLLEDFLGASLFHRRNRLLELTELGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  ++     ++++ S +    L I+     G + L   L +F   YP++++
Sbjct: 68  QYFYEVQPLLEQIALATDKIRQQSSRQI--LTISVPQTFGMHWLVPRLADFHEKYPEVEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D  +     D AI   K      L   +L    +   A+P YL          
Sbjct: 126 RIKGVDQDEGLLGKETDVAIYYGKG-DWQGLESIRLTESRIVILASPEYLSQN-TIHLPA 183

Query: 185 ELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L   +L+     +   + +E  +    VD   G         +    ++Q  +   GIA
Sbjct: 184 DLAGKHLLHSSTHNKWKRMVEHLHIEDIVDAETGS------IFSHTFMVLQAAMHQQGIA 237

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +    + +       L+      +    + Y  YP       K++ F  +I  K ++
Sbjct: 238 IANQLLAQHEIEKGTLIEPFPTTLFDEKSFYVVYPSQSAQVQKVQFFVEWIQQKMKE 294


>gi|126442566|ref|YP_001063970.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126222057|gb|ABN85562.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           668]
          Length = 309

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+ LF R  RGL LT  G 
Sbjct: 17  LNALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDALGVALFERLPRGLALTADGL 76

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +P + +
Sbjct: 77  AYFADVRRALNLIGDATDRLAKRRAN----VTISTTPSFASRWLIPRLASFGDEHPGVDL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + ++A  +P  L         +
Sbjct: 133 RVIADSQFATFQGDGVDLAIRYGKPPFGKGLVTRLLFPVDIYAVCSPALLATPGALARAR 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+     +        +LA +   +        + N     +   + G G+AL 
Sbjct: 193 DLAGHALLHDAHDL-----WPEFLAALPERVATDPAKGPRFNQSSLAIDAAIAGHGVALA 247

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V  +     L R+ +  +  S   Y   P   +  G +     ++  +A+
Sbjct: 248 SDQLVARDIEAGRLRRLFDFALPLSVGYYIVRPSEPRRPGDIAQTEAWLIRQAQ 301


>gi|152988427|ref|YP_001345429.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963585|gb|ABR85610.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 299

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 119/298 (39%), Gaps = 6/298 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D LRVF   AR  SFT AAE+L  +Q ++S+QI  LE E+  +LF R  RG+ LT
Sbjct: 1   MPLSLDLLRVFESAARQLSFTAAAEELGSTQPAVSQQIKRLEQELQTELFQRVHRGILLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L R  +     +E     L          L++AT        L   L  F L +P
Sbjct: 61  DAGLLLLRHVAPALESVEAGIAALGARQRHE--VLQVATDYAFAAYWLMPRLPRFHLAHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L+   + +       D AI              +L    +    +P  L+    P
Sbjct: 119 HLDVSLVTSERGLAGPRGDIDVAILFGDGRSKHG-ETHRLFREEVFPVCSPRLLEGLPLP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+ + L +  ++           D+  L        +P  + L  ++Y  ++Q  + G G
Sbjct: 178 LAKEHLARLPMLHLKPAQHSRWFDWPALFEALAIDRQPIPAVLSFDNYTLLIQAAIAGQG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A+   ++V D      L R + +     +  Y   PE  +    + AF  ++  + +
Sbjct: 238 VAIGWRHLVDDLLEQGLLCRPISESCLSRYGYYALLPERKRRQRLVDAFVGWLRAELQ 295


>gi|300719020|ref|YP_003743823.1| transcriptional regulator, LysR family [Erwinia billingiae Eb661]
 gi|299064856|emb|CAX61976.1| Transcriptional regulator, LysR family [Erwinia billingiae Eb661]
          Length = 292

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 136/289 (47%), Gaps = 16/289 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW  L  F  + R GS + AA++LH+  +++SR+I+ LE  +G++L  R  R   LTEQ
Sbjct: 1   MDWQDLHYFLALVRRGSMSAAAKELHVDHATVSRRIAALERSLGLRLTERLPRRTALTEQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +  V  E+    +  +I+    S  P+  +R++ +  +   L+   + +F   +P+I
Sbjct: 61  GKVIASVAEEMNRVSDRVKIQATSLSAAPAAVIRVSASPAVAALLIAPAVADFTQTHPNI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L   +  + ++   AD A+RL +P +   L+ R++ T+    YA+P +    R P S
Sbjct: 121 SLSLSGASHQVQLNKGEADIAVRLTRP-EDPDLLTRRIGTMRFGLYASPSW--QDRPPES 177

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                    + +   +    +   WL ++       R    + +  ++  Q    G G+ 
Sbjct: 178 ------WLFLGYETSLDYVTQQ-KWLESLLNG----RRIIFRASDLMAQQQAARSGLGVV 226

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFC-YPEALKNTGKLKAFRNFI 290
            LP ++  ++ +L+++  D   P  +++   YPE  ++   ++    F+
Sbjct: 227 TLPCFMGDNDSSLIKLAVDSPPPGRSMWLVAYPEYRRDPSAVRV-MEFL 274


>gi|330818221|ref|YP_004361926.1| transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327370614|gb|AEA61970.1| transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 308

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 121/294 (41%), Gaps = 9/294 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L  F V+ R  SF  AA +L ++ S++S  + GLE ++G+KL  R  R ++ T+ G
Sbjct: 8   DLATLNAFSVICRRKSFRLAAAELGVTASALSHALRGLEEKLGVKLLNRTTRAISPTDAG 67

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L R     +  +E    EL +    PSG +R+    D  Q L+   L  +L  +P  Q
Sbjct: 68  AALVRGLDLGFEHIEGALAELSQFRNTPSGLIRLNVPRDASQLLISPILGRYLNRFPKSQ 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++++D+  +DI     D  IR  + +    +       +     A+P YL+    P   
Sbjct: 128 IEVVVDDGMVDIVKGGFDAGIRYGRSVPQDMVGIPLTPDLEWVLAASPDYLRLHGAPREP 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+ I          +    L T  R         + +N   ++++  +   GIA 
Sbjct: 188 TELLAHSCIRMRLGDESLYQWE--LGTGKRACRIDVPGRVILNETDAVVEAALASVGIAY 245

Query: 244 -----LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
                +  ++  ++  L+ +M D   P       YP   + +  L      I  
Sbjct: 246 CLKQRISRHL--ESGRLLLVMSDWAPPVEPFVMYYPSRRQLSASLVQLVQMIRE 297


>gi|330810525|ref|YP_004354987.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378633|gb|AEA69983.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 304

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 123/296 (41%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   AR  SFT AA +L+++Q +ISRQ+  LE  +G  LF R  R + LT  GS
Sbjct: 9   LNSLVAFEAAARHLSFTVAARELNVTQGAISRQVRLLEDYLGTALFTRTTREINLTATGS 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +   ++      ++    + + ++ + T+  +    L   + EF     +I +
Sbjct: 69  QYYESVRDTLQQIAQATAGIR--HWQGAQQVTVVTSTAMASLWLLPLVSEFQRQNEEIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I  ++  D S    D A+         ++    L    +    +P YL       +++
Sbjct: 127 RIIATDQVSDFSRLDCDLALYYCS-TPPKNMKVTPLFNEEIFPVCSPAYLAQHPGIETLK 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +   D     +   +W   +     EPR   + +NSY  ++Q  + G GIAL 
Sbjct: 186 QLGGCTWLWLEDQHRDWIGWKDWFQRLGYQAPEPR-RRININSYSMLIQSALAGQGIALA 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALK-NTGKLKAFRNFIFLKARD 296
              ++ ++    NLVR  + ++          P+    N   +  FR ++     +
Sbjct: 245 WSGLLSNHLQTGNLVRPTQAILRTDAQFCLLEPQGRAPNRQSVNLFRQWLMAHLAE 300


>gi|330808689|ref|YP_004353151.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376797|gb|AEA68147.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 294

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 135/290 (46%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA +L+ + ++++R I  +E  +G  LF +HA+G  LT  
Sbjct: 2   FDWNDLRYFLELQRSGRLLTAARRLNTTHATVARHIEAIEKSLGSALFVQHAQGYELTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q ++ +SS  P GK+R+  T  LG   L   +      YP +
Sbjct: 62  GETLLKHAEAMENVALLAQEDITQSSA-PLGKIRLGVTEGLGIMFLASRMDGLFQRYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P     L+ RKL    +  YA+  YL       S
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERPAAD-LLVTRKLTDYSLALYASQAYLDRSPALRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  I + D +    E    L  ++     PR+      S ++  Q    G GIA
Sbjct: 180 REDLARHAWIGYVDDLLFSQE----LMFLNSFCRNPRV-VFHSTSVIAQQQAARSGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LP Y+   +P LV ++ D  T   + +      L  + +L+   +++  
Sbjct: 235 VLPCYMASGDPTLVPLLPD-ETIRRSYWISTRRELHKSVRLRVLWDYVVQ 283


>gi|188992544|ref|YP_001904554.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734304|emb|CAP52514.1| transcriptional regulator, LysR family [Xanthomonas campestris pv.
           campestris]
          Length = 335

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 133/311 (42%), Gaps = 17/311 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     +R F     +GS    A++L +S +++S+ I+ LE  +G++L +R  R L LT
Sbjct: 1   MNI-LQSIRSFVSTVDAGSIAGGAKRLGVSPAAVSQNIARLEQHLGVRLLHRTTRSLALT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G+       ++   LE  +  +      P+G+LR+A+T    +++L   L      YP
Sbjct: 60  ERGALYVEQVRQIERDLERARQLVAGPQQAPAGRLRVASTAAFARHVLAPMLPLLRQRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+L+  ++ +  + +  D ++R+   ++   L+ R +  +     AAP YL+ C  P
Sbjct: 120 RLEIELLCTDRVVQHAQESVDVSLRIEAQLED-GLVARHIANVPFVVCAAPAYLQRCGAP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGS 239
            +  EL  H+ +      P       W    D    +P +   L  +   ++      G 
Sbjct: 179 QTPDELKYHDCLLL--RYPVDGRYLRWNFIRDGVRFQPDLGRALVSDDVDALAAMAAAGG 236

Query: 240 GIALLPDYIVKD---NPNLVRIM--------EDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           GI  L  ++V+       L  +                  +Y C  +    T K++AF  
Sbjct: 237 GITRLGAFVVQPYLLRGQLQPLFVARTGGTATPFALEPLRLYLCVADRHDFTPKVRAFME 296

Query: 289 FIFLKAR-DWK 298
            +  +   DW+
Sbjct: 297 HVLERLPDDWR 307


>gi|89092238|ref|ZP_01165192.1| hypothetical D-serine deaminase activator [Oceanospirillum sp.
           MED92]
 gi|89083326|gb|EAR62544.1| hypothetical D-serine deaminase activator [Oceanospirillum sp.
           MED92]
          Length = 310

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 118/293 (40%), Gaps = 9/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L+ F   A+  SFT AA++L+L+Q +IS++I  LE ++G  LF R+ R L LT +G 
Sbjct: 14  LANLQCFSSAAKHLSFTRAADELNLTQGAISQRIRKLEEQLGFALFLRYNRRLQLTAEGE 73

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L           E   +     +   +G+L ++T        L   L +F   +P I  
Sbjct: 74  RLL--IQTNNSLTELDNLIRDIHTQGLAGELSLSTPPSFASEWLLEKLADFSQHFPQIFF 131

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++ +D   +  D AI   +  +   L+   L+   +     P + K        +
Sbjct: 132 RMETHSRLVDFFSEQIDLAIYYGQG-EYPGLVCWHLMDEQLIPVCTPEFAKKYDLWSRPE 190

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L+  +L+      P+      W    +R  +          +     ++    G G+A+
Sbjct: 191 QLNHCHLLHDAQAWPEAGPYSEWSYWAERQSLNLELKQGHCFDKSEHAVKAAKAGLGVAI 250

Query: 244 LPDYIVK---DNPNLVRIMEDV--ITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
               +++   +N  L+   + +  +      Y    E  K    +KAFR ++ 
Sbjct: 251 GRKQLIEKYLNNGELINPFDGLPSVLSQQNYYLVTHEDRKEQPIIKAFREWLL 303


>gi|229150618|ref|ZP_04278832.1| Transcriptional regulator, LysR [Bacillus cereus m1550]
 gi|228632705|gb|EEK89320.1| Transcriptional regulator, LysR [Bacillus cereus m1550]
          Length = 300

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 136/305 (44%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLRNELDIGITF-LPVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  + +       L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKLNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP   +   Y +        + F   + + 
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIKI--ENPTPIIEIGLIYRKDKYMCAATREFIEQLKIT 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|222106868|ref|YP_002547659.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221738047|gb|ACM38943.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 305

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 123/294 (41%), Gaps = 12/294 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L     VAR GSF+ AA +L+L+Q +ISRQI  LE ++G +LF R+ RG+  T +G   
Sbjct: 15  ALVTLDSVARLGSFSAAASELNLTQGAISRQIQTLEEQLGTQLFLRNGRGVVPTPRGENF 74

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           HR        ++   +E    S   +  L IA     G   L   +  F+  +P I +  
Sbjct: 75  HRAVQSALSLIQDASLEAMTGSQGNA--LNIAILPTFGTRWLLPRISSFVAAHPHINLNF 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                  D   +  D AI + KP          L+   +    +P +L +        +L
Sbjct: 133 ATRIGIFDFDAEQLDAAIHIGKP-NWPRATCTFLMDETVAPVCSPAFLVSHHIKAD-SDL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               LI    +  + +   +W  ++   I     + +    ++++ Q C+ G G+AL+P 
Sbjct: 191 ADLPLI---QMKSRPLAWDHWFDSLG--ITATPRAAMSFEQFMNVAQACIAGLGVALMPL 245

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +++    ++  LV   +  +      Y   P+    +  L AF  ++  + + +
Sbjct: 246 FLIGPELESGQLVLASQHSVNSQSNYYLVSPDNRPLSKPLAAFSQWLLQEVKAF 299


>gi|170727406|ref|YP_001761432.1| LysR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812753|gb|ACA87337.1| transcriptional regulator, LysR family [Shewanella woodyi ATCC
           51908]
          Length = 296

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 129/300 (43%), Gaps = 19/300 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   +R  SF+HAA++L ++  +IS+QI  LE+ +G  LF R  R L LT+   
Sbjct: 8   LNALLAFESASRHLSFSHAADELFVTHGAISKQIKSLESYLGTPLFLRQHRKLALTDDAK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           ++T   E++ S    S  L I     L  N L   ++EF   YP + +
Sbjct: 68  RYLPQIQAALQTIKTATDEIK-SHQMQSQTLAINVLPSLTINWLIPRMEEFKQRYPHLYV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +  ++      D AIR         +   KL+   +    AP      +E  S+ 
Sbjct: 127 DLSIGDFTVNFEQSRCDIAIRSATQAPKE-VNYLKLMDEDLCLVCAP---LLMKELHSLD 182

Query: 185 ELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +++K  L+   T  +L P   +      T ++  G        +  +  + Q  V G G+
Sbjct: 183 DINKMTLLKHTTRPELWPYWADKVGLTLTTEKKFG--------MEHFYMLSQAAVSGMGL 234

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           AL+P + ++    + +LV   ++  T  +T Y   P++     K +AF +++      ++
Sbjct: 235 ALIPRFFIEKELADGSLVIPFDEGFTSPYTYYVITPKSQNLPLKAQAFIDWLLEIFAPYR 294


>gi|218232168|ref|YP_002367112.1| transcriptional regulator, LysR family [Bacillus cereus B4264]
 gi|218160125|gb|ACK60117.1| transcriptional regulator, LysR family [Bacillus cereus B4264]
          Length = 300

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 136/305 (44%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  + +       L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKLNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP   +   Y +        + F   + + 
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIKI--ENPTPIIEIGLIYRKDKYMCAATREFIEQLKIT 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|78062920|ref|YP_372828.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970805|gb|ABB12184.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 302

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 116/286 (40%), Gaps = 6/286 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R++  V   G+ + AA  L + Q ++S +I  LE  +G +L  R AR LT TE+G   +
Sbjct: 7   MRIYVRVVERGTMSGAARDLDMGQPAVSERIERLEKHLGTRLLLRSARTLTCTEEGRIFY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             + E+    +     + ++     G +R+A    +G+ +L G L      YP++ I L+
Sbjct: 67  DRSKELLEAADDAVASVSKTENALDGTIRLAAPQCVGEVVLPGVLMHVRTAYPNLHIDLV 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L++  +D   +  D +IR+ + +     +   +  +     AAP YL+      S  EL 
Sbjct: 127 LNDDIVDPVTEGVDISIRVGQ-LGDGGFVAHPVGAVGRRLVAAPSYLERHGPIDSKAELA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            H  I    +     E        D        + +  + +  +    V G GI ++   
Sbjct: 186 NHPFIRVKGVF--ASERLPLQRDGDALDYARIRTIMTTSHWRPMFDTIVAGGGIGVVQQP 243

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              +      LV ++   + P F +            +++A  + +
Sbjct: 244 ACAEALAAGTLVELLPHYVIPDFALNVLVHAQRPLPPRVRAVVDLL 289


>gi|1169886|sp|P45099|GCVA_HAEIN RecName: Full=Glycine cleavage system transcriptional activator
           homolog
 gi|1574123|gb|AAC22848.1| glycine cleavage system transcriptional activator (gcvA)
           [Haemophilus influenzae Rd KW20]
          Length = 301

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 119/290 (41%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +GI LF R  R L LTE G 
Sbjct: 12  LNSLKSFESAARYLSFTKAADELCVTQAAVSHQIKLLEXFLGIDLFKRKNRSLELTELGK 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L      L      P   L I+     G   L  +L EF  LYP I++
Sbjct: 72  AYFVDINKILRRLNEATERLLTLKTDPH--LNISVPQTFGIQWLVPHLSEFNQLYPQIEV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI         +L   +L   ++   A+P  L      +  +
Sbjct: 130 RLTGVDQDEGLLNKEIDLAIYYGLG-NWQNLQVDRLCEENLLILASPELLAEN-PIIQPE 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L KH LI             N L   D  I +  +     +     +Q  + G GI L 
Sbjct: 188 DLKKHTLIHI-HTCDNWQAMANHLQLDDLNIQQGPL----FSHTFMALQAAIHGQGIVLA 242

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
              +     +N +L  ++   +    + Y        +  K++AFR +I 
Sbjct: 243 NRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQAFRQWII 292


>gi|87120661|ref|ZP_01076554.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86163889|gb|EAQ65161.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 300

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 135/295 (45%), Gaps = 20/295 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L +F  + +      AA +L++S ++I+R++  LE  +  +L +R AR   LT +G 
Sbjct: 2   YDDLNLFIQIVQHQGLAKAATKLNMSAATITRRLQKLEQTLNTQLVHRSARQFVLTPEGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++    ++ +LE ++  L   S +  G L++ T  ++    LQ     F+  YPDI++
Sbjct: 62  TYYQTYEPIFEQLEASKNALDMESQETCGSLKVFTPTNISLGFLQPMWSAFIKQYPDIRL 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL--- 181
           +L L+N+  D+    AD A+R+  P   S L Q+KL ++     AAP YL    EP    
Sbjct: 122 ELQLNNQREDLLAAKADIALRIG-PQSDSQLYQKKLGSLSTLFVAAPSYLTLKGEPQTLE 180

Query: 182 ---SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
                  L  H L              N ++T    +  P+IS L  N    I  +   G
Sbjct: 181 ELEEHTLLATHTL---------PNWQLNQISTGRSCVYHPKISTL-TNDISLITHFVCDG 230

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            GI+LLP    +D+     +V++++D   P   ++  +        + K  + ++
Sbjct: 231 LGISLLPINEARDHLASGRIVQVLKDWKGPERELFAVWSTGRLLNPRAKRLKEYM 285


>gi|94313208|ref|YP_586417.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93357060|gb|ABF11148.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 288

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 137/287 (47%), Gaps = 8/287 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD  R+F  + R  +   AA  L + Q+++ R+++ LE  +G  LF R + G  LT+ 
Sbjct: 1   MNWDDARIFVALYRERTLRAAARALDIDQATVGRRLAVLEHALGSTLFLRTSNGYELTQV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R    +           Q    + +G+++++TT  L Q  +   ++     +PD+
Sbjct: 61  GKLAIRAAEAMEQSAHDLVRHTQGMDKRLAGEVKLSTTDALAQEYVVPAIESLHAQHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L      ++++   AD A+R  KP ++  L+ R+L +  +  +A+P Y++   EP+ 
Sbjct: 121 SVVLDTTTHVLNLAKREADIAVRTVKP-RNPDLLARRLASWDVGLFASPAYIRRHGEPVP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +    H+L+ +     K        + +  P+ + RI+  ++N+ L++      G GI+
Sbjct: 180 GERFLGHDLVVYQPHFAKARAP----SFIGEPLTDGRIAA-RLNTNLTLRAALKAGLGIS 234

Query: 243 LLPDYIVKDNPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRN 288
            +P  + + +  LVRI  D  +   + V+    + L++T +++   +
Sbjct: 235 EIPVPMGERDG-LVRIWPDRTSGAPYEVWLVTHQDLRHTARVRVTID 280


>gi|241518393|ref|YP_002979021.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862806|gb|ACS60470.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 300

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 115/293 (39%), Gaps = 8/293 (2%)

Query: 1   MSF---DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M F   +  +L +F  + +  SF  AA+ L ++ S++S  +  LE  +G++L  R +R +
Sbjct: 1   MQFKRNEIHELSIFLAIVQYRSFRKAADHLEVTASALSHSMKALEQRLGVRLLNRTSRSV 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             T  G+ L    S     + +   +L       +G +RI    D    LL+  +  F  
Sbjct: 61  APTAAGTALAEKISAGLELINSGLEDLNGHYQGGAGSIRINVLKDAAVLLLRPAIPVFQQ 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P++++++ +D++ ID++ D  D  IR    I    +       +   A AAP YL++ 
Sbjct: 121 RFPNVELEVAVDDQFIDVTADGFDAGIRYSGTIPEDMIAVPLTPPLKWVAVAAPDYLRSH 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P+  ++L+ H+ I       +  +         R I  P    L        +   + 
Sbjct: 181 GRPVMPEDLNSHHCIRIRTGRGQIYKWEFERGDDRREIDVP--GALISGETDLAINAALE 238

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           G+G+    + +         L  ++    +        Y    +    + A  
Sbjct: 239 GAGLCYCLERLASPYVSAGRLEVVLPKWASMGPPFSMYYSSRRQLPFGVDALI 291


>gi|323498845|ref|ZP_08103828.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323315957|gb|EGA68985.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 299

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 8/300 (2%)

Query: 1   MSFDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ + + +L  F  V +  SF  AA+   +  S +SR I  LE ++G+ L  R  R L+L
Sbjct: 1   MAIELNKQLMAFVDVVKFESFAEAAKHRDMLPSLLSRNIKALEDKLGVVLLKRTTRALSL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G  +++    +           Q  S   +G +R+     L QN +   + +    Y
Sbjct: 61  TEAGETIYQQALVLKELENKMNDFAQNYSSAETGLVRLTCASHLSQNFILPTIGDVQSEY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+ ++  D++ +DI  +  D AIR+ KP Q SSLI +KL + H+   A+P Y++    
Sbjct: 121 PKIRFEVEYDDRRVDIIKEEFDMAIRIWKP-QDSSLIGQKLRSTHLLIVASPDYIQRHGM 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P+++++L       +  L     +   +    DR          + +S  S++Q  + G 
Sbjct: 180 PINLEQLVTLPSACYARL-GVVRDKIQFYDDQDRIQSVQMNPLYKASSPESLVQSALSGM 238

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              ++ D+ +    +   LV+++ D   P   ++Y  YP     +   + F + +  + R
Sbjct: 239 YYTVVADHNLNGEIERGELVQLLPDTRFPEEGSMYAVYP-NRDLSFGARVFVDKLKQRCR 297


>gi|209519841|ref|ZP_03268625.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209499717|gb|EDZ99788.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 301

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 124/299 (41%), Gaps = 9/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D   +R    +  SGS   AA +L LS S++++++  LE ++G +L  R AR L  T
Sbjct: 1   MN-DSADIRFLLTLRASGSLIAAARKLALSPSAVTQRLQQLEKKLGAQLVNRSARRLQFT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L    + +  + +    +LQ       G L+I   +  G+  L   + EF    P
Sbjct: 60  DEGLLLCERGAGLIEQFDALFDDLQTRRGGLVGTLKINAPLGFGRRHLAPLIGEFQQQNP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + L L ++ +  + D  D  + + + +  S+L+   +        AAP  ++     
Sbjct: 120 DIDVALTLSDRPLTETFDRFDLVVHIGE-LPLSNLVGYTIAPNARFVCAAPALVRRIGAL 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            S   L +   I   +      +   W  +  R     R+S  L  N    I Q+   G 
Sbjct: 179 DSPDALSRLPCIVLRE---NNEDVSLWQFSKGRTRRSVRVSAHLSCNDGDVIRQWACEGR 235

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+ L  ++ V D+     LVR++     P   V     + +    + + F  ++  + R
Sbjct: 236 GVILRSEWDVADDLAKGKLVRLLPGWKAPDANVIALTHQRVGLPVRTRHFLQYLQGRFR 294


>gi|319793590|ref|YP_004155230.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596053|gb|ADU37119.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 300

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 118/296 (39%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V     F  A   L + +S +SR+I+ LE  +G +L  R  R   +TE G
Sbjct: 3   DLNDLYYFVQVVDHRGFAPAGRALGMPKSKLSRRIALLEERLGTRLIQRSTRRFAVTETG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +  +  +P G +R+   + L    +   L  F++  P ++
Sbjct: 63  QTYYGHCKAMLVEADAADEAIALTHAEPCGIVRMTCPVALLDARIADMLAAFMVANPRVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  PI+ S L+ R L        A+P  L N   P  
Sbjct: 123 IHLEETNRRVDVVGEGIDVAIRVRPPPIEDSDLVMRVLAERGQCLVASPRLLAN-GVPEV 181

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L      +    +P     +N +              L     L++    + G G+A
Sbjct: 182 PADLAGLP--SMDLGLPAHEHVWNLIGPDGTQAAIRHQPRLITRGMLALRAAAIAGVGVA 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP  +V++      LVR++         ++  +         ++A  +F+  + +
Sbjct: 240 QLPSMMVREQIERGELVRVIPGWAPEREIIHVVFASRRGLLPAVRALVDFLADRFQ 295


>gi|322515351|ref|ZP_08068347.1| transcriptional regulator [Actinobacillus ureae ATCC 25976]
 gi|322118638|gb|EFX90860.1| transcriptional regulator [Actinobacillus ureae ATCC 25976]
          Length = 296

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 131/297 (44%), Gaps = 7/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           +D+  + VF  V   G+   AAE+L ++ S++++ I  LE  + IKL  R  R L+LT+ 
Sbjct: 2   YDYKAILVFVTVVEQGAMQAAAEKLSMTPSAVTQTIKKLENHLKIKLLNRTTRKLSLTDA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G+  ++  + + H  E     ++    +P G+L+IA+   L  + L    K  L  +P+I
Sbjct: 62  GNIFYQHIAHIQHSAENAVRSIEALRSEPVGELKIASVSGLIDSFLIRTFKNILDNHPEI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ +  ++  +DIS    +  +R    I     + R L        A   Y+K+   P +
Sbjct: 122 RLNITFEDTPVDISEQKFNILLRSGN-ITDDRTVARHLHNFEWAIVAHHDYIKHHGLPKN 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL+K + I++ D   K       L+             +  NS  +     + G GI 
Sbjct: 181 LSELEKLDWISYPDKEKKKSPIL--LSRGRDTATFMPYYRITCNSLNAAKGLLLNGLGIT 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP   ++D   +  L+ +  D   P   +Y   P+ ++ + K++     I    R+
Sbjct: 239 KLPIKYIRDQLESGKLISLCSDWKLPKTPLYLVTPQRIQ-SEKVRVASQLIIDYFRN 294


>gi|170697391|ref|ZP_02888483.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137722|gb|EDT05958.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 296

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 122/289 (42%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 13  LLVFEAAARHESYTRAADELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 73  VELSGALGRIRGATLQ-AMSHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-PLSIQEL 186
                ID   D  D AI +        L   +L    + A A+P      +  P +    
Sbjct: 132 SRIGGIDFHTDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIASPDAAGRRKAGPRAPAWA 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
               L+    +         W +       E RI    ++ S+  ++Q    G GI L+P
Sbjct: 191 VGQTLLG---VTSNQHAWAEWFSHFGLDHREMRIGPSFELTSH--LIQAVRAGMGIGLVP 245

Query: 246 DYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V+D      LV I  D IT   + Y  YP        L AFR ++ 
Sbjct: 246 KVLVEDELGRNELVSI-GDAITSQRSYYLVYPPENDTLPSLVAFRAWLL 293


>gi|77456896|ref|YP_346401.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77380899|gb|ABA72412.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 309

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 125/296 (42%), Gaps = 7/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GS + AA  + LS +  S  +  +E ++G +L  R  R L LT +G 
Sbjct: 4   FDDLQLFVRAADLGSLSAAARVMDLSAAVASAALKRIEQQLGARLLARSTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       L+  +  L     + SG L+++   D G+NLL   L +F   +P + +
Sbjct: 64  GFLEYARAALSNLDEGRRLLASGQDQVSGILQLSAPSDFGRNLLLPWLDDFQHEHPKLTV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L+L ++  D+     D A+R  +P + SSL+   +         A+P YL    EPL +
Sbjct: 124 RLLLGDRIADLFRQPVDIALRYGEP-EDSSLVALPIAPHNRRVLCASPAYLARHGEPLHL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +HN + +  ++   + D        R +G         +    +  + V G+GIA 
Sbjct: 183 EQLAQHNCLLY--MLGGRVHDHWSFHDGRREVGLTVSGDRFSDDADVVRLWAVAGAGIAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V  +     L  ++ +++     +        + +  +   R  +  +  +
Sbjct: 241 KSWLDVAGDVLAGRLKVLLPELLCERAPLNLLCAHRAQLSKPVNLLREMLASRCAE 296


>gi|330817116|ref|YP_004360821.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
 gi|327369509|gb|AEA60865.1| LysR family regulatory protein [Burkholderia gladioli BSR3]
          Length = 316

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 135/291 (46%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           ++VF  +   GSF  AAE++ +S +  S+ ++ LE+ +  +L +R  R ++LTE G + +
Sbjct: 7   MQVFRHIVEIGSFVGAAERMGMSSAMASKHVAHLESRLDARLLHRTTRRVSLTEAGREYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                   +++     +   ++ P G+LR+ +    G   L G + ++   YP++ + + 
Sbjct: 67  ERVVPALIEIDEASQSVNTEAIVPRGRLRVVSPSSFGLRHLVGAVTDYTARYPEVNVDVA 126

Query: 128 LDNKDIDISMDYADCAIRLRK-PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + ++ +D + +  D AI +     + +S   R L T  +   A+P YL     P ++ +L
Sbjct: 127 ISDRVLDPADERYDIAILVTPSSTKPASPFARPLATAQILFVASPAYLAENGTPATLTDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             HN++   +            A   R       S L VN   ++    V G+GIALL  
Sbjct: 187 AAHNILQDSNGAGPLDSIAREAAIASRVALN---SNLSVNQPEALRIAAVNGAGIALLGT 243

Query: 247 YIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +  D+    +LV ++ DV  T   +++     + + +   ++F +F+  +
Sbjct: 244 DVAGDDIDAGHLVPLLRDVSPTRRLSIHATLGASPRASTTSRSFVDFLAER 294


>gi|326797143|ref|YP_004314963.1| LysR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326547907|gb|ADZ93127.1| transcriptional regulator, LysR family [Marinomonas mediterranea
           MMB-1]
          Length = 300

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 6/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L VF   AR  SFT AA +L  +Q +IS+Q+  LE  +   LF R  RG+ LT+ G 
Sbjct: 10  LQMLVVFESSARHLSFTAAARELGTTQPAISQQVKALEGYLKTPLFKRVYRGVELTDAGH 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L + T   + ++  T   +++ +  P  ++ +AT        L   L +F   +PDI I
Sbjct: 70  ILLKTTQASFGEIRKTVTYIRKKNKTP--RINVATDFAFSAYWLLPRLPDFRKRHPDIDI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L     ++DI +  AD AI     +  S     KL    ++   +P  L+       + 
Sbjct: 128 RLHTAQSNVDIGLSDADLAIVFSNGVH-SGFYTDKLFEEDVYPICSPRLLEEVGPITDLD 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++    L+       +    +  L         P  S ++ ++Y  ++Q  + G G AL 
Sbjct: 187 QITGVPLLKLNAGDEEKWMTWETLFQQHNTSWSPSHSVMEFDNYTLLVQAAIAGQGFALG 246

Query: 245 PDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              ++ D  +   LV +        +  +   P+ L     +K F+++I  +
Sbjct: 247 WGSLIDDMIDKNMLVGLQAFRSQSHYGYFTVVPQPLVEDPIVKTFKDWIHSQ 298


>gi|317049122|ref|YP_004116770.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950739|gb|ADU70214.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 296

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 120/291 (41%), Gaps = 14/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   AR  S   AAE+L ++ S++S+QI+ LE  + ++LF R  R L LT +G   
Sbjct: 8   ALMCFESAARLLSMKKAAEELCVTPSAVSQQIAKLEESINVRLFLRVPRRLELTTEGRIY 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R     + ++      L +   +   K+ ++ T       L   L  F    P +++Q+
Sbjct: 68  LRAIRPAFSQISEATQRLMDEGKRN--KITVSCTSGFAMQWLLPRLPAFEQANPGVEVQI 125

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              N+ +D+  +  D A+R         L    L+   +    +P  L     PL+  ++
Sbjct: 126 STTNRKVDLLAEGIDFAVRHGTG-DYPGLEVECLLHDRLIPVCSPQLLA---TPLTPPDI 181

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            ++ L+     +   +    W   +     +     + ++S  ++ +  + G GIAL+  
Sbjct: 182 LRYTLLHDEHRLDWGL----WFHALGFHDADTAKGPVFIDSNGAV-EAALAGRGIALIRQ 236

Query: 247 YIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +V +      L+  ++  +T     Y  + E+       + FR+++   A
Sbjct: 237 SLVSEELAQNLLMNPLKVAVTSPIAYYLVWDESAVLQRISRRFRDWLVATA 287


>gi|311106253|ref|YP_003979106.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760942|gb|ADP16391.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           91 [Achromobacter xylosoxidans A8]
          Length = 305

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 123/291 (42%), Gaps = 10/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F    R GS   AAE L ++  ++S+QI  LE  +G+ LF R   G+ LTE G++ 
Sbjct: 9   ALRAFTETGRLGSLKAAAEVLGVTPGAVSQQIRLLEDRLGLALFVRERHGVRLTEAGARA 68

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
           +      + ++E +   L+  + +    L ++T      + L   +  F +L+PDI++++
Sbjct: 69  YPGLMRAFDQIEKSLALLESQAAQR--TLTVSTVPSFASSWLVPRIGRFSVLHPDIEVRV 126

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ +D   D  D A+R     Q   L   +L+   +   A+P  L         ++ 
Sbjct: 127 EASSQLVDFKRDRIDVALRHGLG-QYPGLSAFRLMAPVLLPVASPALLAQGPGIERPEDC 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            K+ L+   D     +    WL       G+           L +++    G GIAL+ D
Sbjct: 186 LKYPLLQDSDRADWPL----WLQAHGVDAGQEAQRGPSFEDDLLLLRAAATGQGIALVQD 241

Query: 247 YIVKDNPNLVRI---MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              +++    R+   ++      F  Y           +++AF +++  +A
Sbjct: 242 THAREDIESGRLAIALDQPWPARFAYYVVSRPDALLRPEVQAFIDWVKAEA 292


>gi|72383964|ref|YP_293318.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72123307|gb|AAZ65461.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 290

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 125/292 (42%), Gaps = 8/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +W+  RVF  V R  +   AA+ +++ Q+++ R+I+ LE  +G  LF R + G  LT  
Sbjct: 1   MNWNDTRVFLAVQRERTLRRAAKVVNMDQATVGRRIAALEHALGATLFLRTSDGYVLTSA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G    R   ++         + Q    +  G++R+ TT  L    L   ++     +PD+
Sbjct: 61  GENALRSAEKMEQSAHELARQAQGIDTRLEGEVRVTTTDTLALAFLIPAIERLHAEHPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    + ++++   AD A+R  KP  +  L  R L    +  YA+  YLK   EP  
Sbjct: 121 RVLLNTSTQMMNLARREADIAVRTIKP-DNPDLAARLLARWTVGLYASRTYLKRHGEPAV 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H+L+ +                V  P    R+    VNS L +      G  I 
Sbjct: 180 GTGFAGHDLVIYQPHTSGSRLP----TLVGEPTHTGRLVS-AVNSSLMLRATIRAGIAIG 234

Query: 243 LLPDYIVKDNPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            +P ++ + +  LVRI         + V+    + L++T +++A  + I  +
Sbjct: 235 EVPVHLAERDG-LVRIWPKRERAQPYEVWLVTHQDLRHTARVRAMIDAIVAE 285


>gi|171319230|ref|ZP_02908347.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171095574|gb|EDT40537.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 311

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 117/276 (42%), Gaps = 7/276 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L +S++++S++I+ LE   G+ L  R  R + LT+ G  L   T + +  +      +
Sbjct: 30  QRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTDAGQTLVDSTRDAFESIGQHFARV 89

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           ++ + +P G LR+   + LG+  +  +L +FL  +P + I+L L ++   ++ +  D AI
Sbjct: 90  KDLAGEPRGLLRVTAPVALGRQQVVPHLPDFLRQHPGVHIELDLSDRLHSLTQEGFDLAI 149

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R       +  +  KL        A+  YL     P    EL  H+ + +          
Sbjct: 150 RHTTTAPQTH-VAWKLCDTRSLLVASRDYLDARGAPRHPSELVDHSCLCYLRDNEPAAWS 208

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F       + +  P       N+  ++ +  + G GIALLPD+  + +     LV +++ 
Sbjct: 209 FEPDGRRRQRVSVPVRGSFAANNSEAMREAALGGLGIALLPDFSAQRDLDAGRLVALLDG 268

Query: 262 VITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
                     ++   P +      ++A    +  + 
Sbjct: 269 WRPSGAFGDHIFAIRPYSPVVPSAVRALVRHLRERL 304


>gi|52424950|ref|YP_088087.1| DNA-binding transcriptional activator GcvA [Mannheimia
           succiniciproducens MBEL55E]
 gi|52307002|gb|AAU37502.1| LysR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 297

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 120/294 (40%), Gaps = 13/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  + I+LF R  R L LTE G 
Sbjct: 12  LNSLKAFESAARFLSFTKAADELCVTQAAVSHQIKLLEDFLNIRLFIRKNRSLELTELGK 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +  S +  KL     +L+ +       L I+     G N L   L  F  LYP+I++
Sbjct: 72  NYFQEISPILQKLADVTEKLKSTDNP---HLTISVLQSFGINWLVPRLNRFNQLYPNIEV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++    +D  I  +  D AI         +L   KL   ++   A+P  L N     S  
Sbjct: 129 RIKSAEQDEGILGNDIDVAIYYGYGNWD-NLKTEKLSEDNLLILASPKLLANNPV-NSKD 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI     +       N    +        I  L  +     +Q  V G GI L 
Sbjct: 187 DLKHHTLIH----VHTRDNWQNMATELGISDLNIHIGPL-FSHTFMALQAAVHGQGIVLA 241

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + +   DN NL  ++   +    + Y        N   + AFR +I  + +
Sbjct: 242 NSILAQQEIDNGNLQVVLPYELKDPKSFYVVSDTNRTNDQNISAFRQWIMQEMK 295


>gi|222081053|ref|YP_002540416.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725732|gb|ACM28821.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 301

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D+D L +F  +A++G    A     + ++++SR++S LE  + ++L  R  +G+ LTEQG
Sbjct: 6   DFDGLALFIRIAQAGGLASAERATGIPKATLSRRLSVLEESLNVRLVRRTKKGVVLTEQG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L   +   +   E    E+Q+  V  SG +R++   D+   +L   L +F   YPD+ 
Sbjct: 66  QQLFDRSQTAFMLAEQAVAEVQDERVALSGTVRLSLPPDMATAVLAPTLIDFKTRYPDVT 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I++ L ++ + +  +  D  +R+  P+  S L+ +++ T+     A+P +L    +  + 
Sbjct: 126 IEMTLADRRVSLIEEGYDLVVRMG-PVADSELMFKRIATLPRTLVASPAFLSGHPDLSAP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +++    +    +    +E     A   R    PRI     N    +++    G GIA 
Sbjct: 185 GDVEMLPALA---IRRDRIEWDLQNAQGVRETVRPRIG-FAANRQTILVEAACAGLGIAN 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR-NF 289
           LP +++KD      LV ++ D       +   + +       +KA   +F
Sbjct: 241 LPKFMIKDAITAGALVPVLPDWEPSPVEMTALWQKDRITARLIKAIVSDF 290


>gi|163745794|ref|ZP_02153153.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380539|gb|EDQ04949.1| transcriptional regulator, LysR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 299

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 113/291 (38%), Gaps = 13/291 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  V R G+ T AA++L+L+QS++SRQI  LE ++G+ L  R  R L+ T+ G   
Sbjct: 13  ALLSFEAVVRLGTATAAAQELNLTQSAVSRQIKTLEDQLGVSLMIRQGRRLSPTQAGLDY 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++       Q  +   +    G L +A     G + L   L++F   +P++ + L
Sbjct: 73  VTQVRDI--LNRLAQASVSARTNPTGGTLDLAILPAFGMHWLAPRLRDFARAHPEVTVNL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
                    +    D AI          +    L+   + A  AP  L         +++
Sbjct: 131 STRLHPFAFAGSRFDAAIHFGHE-DWPGVRYLPLLPETVVAVCAPDLLAE--PLEDARDV 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               L+             + L   D P G      +  + + ++ Q  + G G+ALLP 
Sbjct: 188 RHLPLLHLETRPRGWARWLSSLGVTDEPPG-----GMMFDQFSTMAQAAIHGLGVALLPT 242

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  +    +  LV             Y  +PE    T  L +FR ++  +A
Sbjct: 243 FFARPYLRDGQLVLAASQTTQSIGNYYLVWPEDRDETAALASFRAWLAEQA 293


>gi|194367799|ref|YP_002030409.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194350603|gb|ACF53726.1| transcriptional regulator, LysR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 321

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 127/284 (44%), Gaps = 8/284 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GSF+ AA +  L    ++  ++ LE E+ ++LF R  R L LT +G+
Sbjct: 4   FDDLQLFVRTAALGSFSQAAREADLLPGQVAAAVARLERELDLRLFVRTTRSLRLTGEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  EV   L   Q  +Q    +  G L+++   D G+NLL   L  F   +P +++
Sbjct: 64  LYLPYAQEVLATLREGQARVQGEDAELHGTLQLSAPSDFGRNLLLPWLSAFRAAHPRLRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
            L L ++  D+  D  D AIR+      +S +   L+        AAP YL+    P  +
Sbjct: 124 HLRLSDEVADVFRDPVDVAIRIGH-FDDASYVALPLLEGNRRVLAAAPDYLQRNGMPTRL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H+ + +  L  +  + ++      R +  P    L  +    + ++ V G GI  
Sbjct: 183 EDLREHDCLVY-QLNGRAYDRWS-FDVDGRRVVMPVRGPLVCDDADVVRRWAVAGEGITY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
                ++++     L +++ D +  S  +    P   + +  ++
Sbjct: 241 KSWLDLREDVLAGRL-QLLLDGVGSSIPLQLVCPHRKQFSPAVR 283


>gi|254249703|ref|ZP_04943023.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|124876204|gb|EAY66194.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 339

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 119/293 (40%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT  G 
Sbjct: 41  FELMETFVRIVEAGSLSAAAVQLHTTQPTISRRLQALENSLGMRLLQRTTHTMRLTVDGE 100

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +   E+       + +L+ +  +P G LR+A     GQ      L +FL  YP + +
Sbjct: 101 RCFKQAKELLASWAAFEADLRGAQEEPDGLLRVAVPHAFGQQRFVAPLAQFLRDYPRVSV 160

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D      DCAI++ +P     ++  +L  +     AAP  L     P    
Sbjct: 161 EWLLQDEVRDFVGSGIDCAIQVGEP-TDPGVVAIRLTKVPRFVVAAPSVLNGADVPADPD 219

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     +         +   +  +   R I       +   +  ++    +LG G  + 
Sbjct: 220 ALAALPWLALRTYYRTELALTHAASGDTRRIAI--RPRITTANLYALRSAALLGVGACVG 277

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +++ D+    +LV +  +       VY  YP A     +L  F   +    
Sbjct: 278 SSWMLADDLARGDLVHLAPEWQAAPLPVYLTYPHAQFYPSRLVRFAAMMREAV 330


>gi|71278370|ref|YP_268410.1| LysR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144110|gb|AAZ24583.1| transcriptional regulator, LysR family [Colwellia psychrerythraea
           34H]
          Length = 298

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 130/290 (44%), Gaps = 9/290 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
             +L +F  V + GSFT AA+QL +++S++S+QI  LE ++ I++  R  RG++ T  G 
Sbjct: 7   LSRLIIFAEVVQQGSFTGAAKQLGITKSAVSQQIKSLEADMDIRVLNRTTRGVSTTALGQ 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL      +  +++    ++  +   P G+  I     L  N++   +++  + YP I+ 
Sbjct: 67  KLLSRCQVLKDQVDLIFKDIVNAEENPRGRFAITLPHSLESNVVMPAIEQLCIEYPGIEP 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I+ +  +D+  +  D AI     +  SS     + TI     A P YL     P  + 
Sbjct: 127 EIIVSDSSLDLVENNLDVAIHAGD-LPDSSYRALPIGTITEIFCATPLYLNKNFTPQKLS 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ-VNSYLSIMQYCVLGSGIAL 243
           +L +   I+         +  +   + ++      ++    VN++ + +   +   G+ L
Sbjct: 186 DLAQLKWIS----TSWQKQKMSVYNSTNKEKVTIELTQFSKVNTFSTALAMALRHLGLVL 241

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPD + K    +  LV IME    P + V+  +    +    L  F   +
Sbjct: 242 LPDNVAKPLIKSGELVHIMEQFTGPVWPVHTLHAYQREKPVHLTRFHQLL 291


>gi|21240813|ref|NP_640395.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106081|gb|AAM34931.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 291

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 132/296 (44%), Gaps = 14/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + L  F +VA +     A+     S++++SR+I+ LE ++G++L  R ARGL LTE 
Sbjct: 1   MDLNALIDFALVAANQGLGKASRASGRSKATLSRRITELEEQLGVRLVERSARGLKLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L   T     ++       +E    P G+LR+A+ +   Q  +     +F   YP+I
Sbjct: 61  GQQLMARTEVPLSEVAEAMTAAREGLSTPRGRLRVASPVLFSQLAMGRIGADFCAAYPEI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++++ +++ +D+  +  D AIR+  P   SSL+ R      +   AAP       + + 
Sbjct: 121 TLEVVAEDRTVDLVEEQFDVAIRI-NPRPDSSLVGRCFAKDRLVVVAAPSIAMPSGDAMH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                         ++    +   W+    R   EP +  +Q +S+L +    + G G+A
Sbjct: 180 P----------VPGVVMSSFQPTTWVLDDGRLALEP-VPRMQFSSFLMVRDAVIAGGGVA 228

Query: 243 LLPDYIVKDNPNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L+P  I  +      +++   +      ++  +        K++AF +FI  +  D
Sbjct: 229 LIPQSIAWEQLARGELLQWGTISGVEPALWVLHTSRRLAAPKVRAFVDFICARYPD 284


>gi|54298381|ref|YP_124750.1| hypothetical protein lpp2445 [Legionella pneumophila str. Paris]
 gi|53752166|emb|CAH13598.1| hypothetical protein lpp2445 [Legionella pneumophila str. Paris]
          Length = 302

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 131/297 (44%), Gaps = 12/297 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+     L+ F       SF+ AA++L++S S +S+QI+ LE E+ + L  R    LT+T
Sbjct: 1   MNI-LSCLKGFITTVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLIRSTTRLTVT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L+  + +++ +LE  ++      ++ +G +R+  T+      L     +F+  YP
Sbjct: 60  DSGHRLYEKSLQLFEQLEAVKVIATPDQLELNGVIRLYLTVTPAIPYLTTLSIQFMRQYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++ +I+ +   ++     D AI     ++   L+ ++L +I    +A+P Y+     P
Sbjct: 120 KIEVDIIVGSDTKELYSSTFDLAISF-DDVKHPKLVCKRLFSIQRKVFASPGYIAQHGLP 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++ EL KHN +       +    FN                 + N+   + Q  V   G
Sbjct: 179 QTLDELPKHNCLINTLYGLQNKWVFN-------KKIIHVSGNFKSNNAGVLKQAAVADVG 231

Query: 241 IALLPDYIVKDNPN---LVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I   P + V +      L+ ++    +P   +Y   P+   +  K+    NF   KA
Sbjct: 232 ILWAPYFSVYEEIKNEALIPVLPHESSPDINLYAICPKPTIDEQKINLLLNFFCEKA 288


>gi|13472549|ref|NP_104116.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023295|dbj|BAB49902.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 303

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 117/294 (39%), Gaps = 12/294 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   L  F  VAR GSFT AA++L L+Q ++SRQI  LE + G +LF R +R + L+  G
Sbjct: 10  NISALAAFEAVARLGSFTAAAQELDLTQGAVSRQIRLLEDQFGRRLFERDSRNVRLSTAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                       +L    + L     + SG L +A     G   L   + +F+   PDI 
Sbjct: 70  EIYAEAVRSALGQLRDAALGLMS--NRHSGILNLAILPTFGTRWLMPMIPDFVANNPDIT 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I  +      D + +  D AI    P          L++  +    +P +L + R   + 
Sbjct: 128 INFVTRVGRFDFARERLDAAIHYGLP-DWPEADSTLLMSETVAPVVSPEFLAS-RAIATP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ++ +  L+          E F       + +  P    +Q   + +  Q C+ G G+AL
Sbjct: 186 ADIGRQPLLHMATRPGAWTEWFE-----HQGLSAPAGPGMQFEQFGTAAQACMAGLGVAL 240

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP  ++        LV      +      Y   P   +    + +FR+++  + 
Sbjct: 241 LPLLLIAGELQRGQLVPAPGQPMQSRSAYYLVVPHDKREHPPVASFRDWLLEQV 294


>gi|94310547|ref|YP_583757.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354399|gb|ABF08488.1| Transcriptional regulatory protein, LysR family [Cupriavidus
           metallidurans CH34]
          Length = 305

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 122/291 (41%), Gaps = 7/291 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD  R F  VARSG+ + AAEQL    ++++R I  LE  +  +LF++   G  LT+ G
Sbjct: 10  NWDDYRYFLAVARSGTLSAAAEQLGTEHTTVARHIHALERTLNTRLFHKSHTGYALTDAG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L     E                 + +G +RI      G   L   +      +P ++
Sbjct: 70  ERLLATA-ETIEGALLASKAAAAGEQEIAGIVRIGAPDGFGSMFLAPRIHALTERHPRLE 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++    +   ++   AD AI L    +   +   +L    M  Y    YLK   +  + 
Sbjct: 129 VEIFAAARIFSLTRREADIAIGLSGA-EHLRVASHRLTDYRMFVYGTKSYLKRAAQIRTK 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  + + + +      F+   +    +G    + ++  + L+ +   + G  + +
Sbjct: 188 ADLAQHPFVGYVEEL-----LFSPELSFSGAVGVELPARVRCTNLLTQVHATLSGHCLCI 242

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +P Y+  D P LV ++ D +  + T +    E    +  ++A  NFI  + 
Sbjct: 243 IPAYVAADFPALVPVLPDAVAVTRTFHMHVHEDHWKSAHVRAVANFIAEEV 293


>gi|330980860|gb|EGH78963.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 319

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 116/292 (39%), Gaps = 10/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FD + L  F  V     F  A+ +L + +S +SR+I+GLE  +G++L +R  R   +TE 
Sbjct: 2   FDLNDLFYFVQVVECLGFAPASRKLGIPKSKLSRRIAGLEERLGVRLIHRSTRTFAVTES 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G   +     +  + E  +  +  S  +P G+  I+    L        +  F   +P +
Sbjct: 62  GRDYYAHCVAMLVEAEAAEEAILRSKSEPQGRGVISCPPALAAMGFNETIARFAAEHPKV 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           QIQ+   N+ +D   +  D A+R+R  P++   L+ +KL        A            
Sbjct: 122 QIQVESTNRRVDPLTENIDIALRVRFPPLEDDGLVVKKLGHSAQRLVARADLAARLSATP 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           S+  L     +     +P    +  WL      +         L  +    ++Q  + G 
Sbjct: 182 SLDALSTLPSL----DMPSSNHEHRWLLETQPGQYAEIRHTPRLISSDLDMMLQAALQGV 237

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G+A LP+ IV++   +  L+ +  +       V+  +         ++   +
Sbjct: 238 GVAQLPELIVREALQDGRLIELFSEHRPKCGIVHAVFASRRGLLPAVRGLLD 289


>gi|312884229|ref|ZP_07743938.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368002|gb|EFP95545.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 297

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 128/287 (44%), Gaps = 10/287 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F V AR  S++ AAE+L +SQ+++S++I  LE  +G KLF R  R + LTEQG  L 
Sbjct: 11  LRYFEVAARLNSYSRAAEELFISQAAVSQKIRQLEDGLGCKLFVREGREMRLTEQGKILF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  S+    + T   +LQ       G L +++T       L   L +F   +P+I I++ 
Sbjct: 71  KHVSQGLESIITGLNQLQS--EPVEGLLCVSSTPSFASCWLLPKLWQFSSQHPNIPIRIE 128

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSS-SLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               + ++     D AI   + + ++  L +  L    ++ + +PH L N  E  S ++L
Sbjct: 129 TSCDEPNLKQGNIDLAIWQGEELGNTVGLHKEFLFEEPIYPFCSPH-LANNIELTSPEQL 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
               LI +           +W A     + +  +   +V+++   M   V G G  L  D
Sbjct: 188 LSSWLIHYQS---GGYPWQSWFAQAGVKMNKESVQWTEVSTFDHAMNAVVAGHGACLASD 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +  D      L++  +  + P       Y        +++AF N++
Sbjct: 245 SLANDFVNRGLLIKPFQIGMNPGIQFNLFYDHESPRLKRIQAFTNWL 291


>gi|221214943|ref|ZP_03587911.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
 gi|221165170|gb|EED97648.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD1]
          Length = 330

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 117/276 (42%), Gaps = 7/276 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L +S++++S++I+ LE   G+ L  R  R + LT+ G  L   T + +  +      +
Sbjct: 49  QRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTDAGRTLVDSTRDAFESIGQHFARV 108

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E + +P G +R+   + LG+  +  +L +FL  +P + ++L L ++   ++ +  D AI
Sbjct: 109 KELAGEPRGLVRVTAPVALGRQQIVPHLPDFLRAHPGVHLELDLSDRLHSLTQEGFDLAI 168

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R       +  +  KL        A+  YL     P   +EL  H+ + +          
Sbjct: 169 RHTTTAPQTH-VAWKLCDTRSLLVASRDYLDARGAPRHPRELVDHSCLCYLRDNEPAAWS 227

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F         +  P       N+  ++ +  + G GIALLPD+  + +     LV +++ 
Sbjct: 228 FELQGRRRERVSVPVRGSFAANNSEAMREAALGGLGIALLPDFSARRDLDAGRLVSLLDG 287

Query: 262 VITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
                     ++   P +      ++A    +  + 
Sbjct: 288 WRPSGAFGDHIFAIRPYSAVVPSAVRALVRHLRERL 323


>gi|320158893|ref|YP_004191271.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
 gi|319934205|gb|ADV89068.1| transcriptional regulator, LysR family [Vibrio vulnificus MO6-24/O]
          Length = 295

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +++ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWFQSVNSYIRVVEEGSFNAAARKMNTTSSAISKRIQWLEEKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYQRAKLQLDGWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLILD--NKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I+IQL      +  ++S+   D  I R  + + S S     L       +AAP Y++   
Sbjct: 121 IKIQLFTTLPGQLPELSL---DLFISRELEQLNSLSFKATALFEHKATFFAAPSYIEKYG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P + ++L  HN++ +G+   + ++  N      R             +  ++      G
Sbjct: 178 MPQNAEQLVNHNILIWGEKPSRELKLNNGKRMTLR-------GNFSTTNPEALFHGAKRG 230

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI L  + ++K+      LV ++ +V     TVY  YP+      + K F +++  + +
Sbjct: 231 MGILLSNNVMIKEELRTGALVPVLPNVHADEATVYAYYPKLDYQHTRTKLFLDYLKERLQ 290

Query: 296 D 296
            
Sbjct: 291 Q 291


>gi|152987429|ref|YP_001350961.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150962587|gb|ABR84612.1| transcriptional Regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 309

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 116/291 (39%), Gaps = 10/291 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L+ F  VAR  SFT AAE+L L+QS++S+Q++ LE ++   LF R  + L LT  G   
Sbjct: 12  ALQCFEAVARHLSFTRAAEELSLTQSAMSKQVAQLEEQLQHALFRRVRKRLQLTPAGELY 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                 +  ++E        S    +  LR+AT    G   L   L  +   +P+I + L
Sbjct: 72  LAEVRRILQQVE-LSTRFLLSYGGETEVLRVATPPTFGARWLIPQLNGWRHRHPNIHLDL 130

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             + +  D+   + D A     P         +L    + A  AP  L        + E 
Sbjct: 131 RQELEPDDLRQGHCDLAFFFG-PGTLPGAECIRLFGEELVAVCAPALLPAGG----LDEP 185

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +   +       +     +W A++ R   +      + +++   ++    G G+ALLP 
Sbjct: 186 TQLAGLVLLQNASRAEAWHDWFASLGRNC-QGCYHGPRFDTFYMCIRAAQAGCGVALLPR 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           ++V++      L       +      Y  YPE      K++ F  ++  + 
Sbjct: 245 FLVEEELAEGKLAIAWPHALPSQEAYYLAYPEHAAEVPKVRHFVEWMRERL 295


>gi|95026180|gb|ABF50908.1| AmpR [Ochrobactrum anthropi]
          Length = 291

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 123/295 (41%), Gaps = 12/295 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               + LR F   AR  SFT AA +L ++Q+++S Q+  LET + + LF R  RGL LT 
Sbjct: 5   HLPLNSLRAFEASARHLSFTKAAIELCVTQAAVSHQVKSLETRLNVTLFERLPRGLMLTS 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L     + + ++  T    +    +    LR+     L    L   L++F   YP 
Sbjct: 65  EGETLLPTLKDAFDRIAGTLERFEAGHYREI--LRVGAVGTLAVGWLLPRLRDFQNRYPF 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L  +N  +DI+ +  D AIR         +   +L+   +     P      R P 
Sbjct: 123 IDLRLSTNNNRVDIAAEGLDYAIRFGSGAWH-GIDATRLLEAPLSPLCIPELACELRTP- 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H L+       +  E   W          P    +  +S L++M+  + G+GI
Sbjct: 181 --ADLARHTLL----RSYRADEWTQWFVAAGVTGDMPLPRSIMFDSSLAMMEAAMQGAGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL P  +         I++   T     + +    ++   T  + AFR+++   A
Sbjct: 235 ALAPPLMFSRQLLSETIVQPFETTVTMGSYWLTRLQSRTETQAMAAFRDWLTDAA 289


>gi|254254929|ref|ZP_04948246.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gi|124899574|gb|EAY71417.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 297

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 121/292 (41%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+ 
Sbjct: 12  NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      +      L +        L I+TT       L   L +F   +PD  ++
Sbjct: 72  YFSDVQRALLAIADATDRLVKRRAA----LTISTTPSFASKWLIPRLAQFTDAHPDYDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D +      D  D AIR  KP     L+   L  + + A  +P  L     P S + 
Sbjct: 128 VIADPQLATFRHDGVDLAIRYGKPPFGKHLVAHPLFPLDVCAVCSPALLAA---PASPRA 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+     +        ++A +  P+       L+ N     +   V G GIAL  
Sbjct: 185 LAGLVLLHDAHDLWPA-----FVAALPEPVDVDPHKGLRFNQTSLAIDAAVAGQGIALAT 239

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           D +V+ +     L +  E     S   Y  YP   ++   + A R++I  +A
Sbjct: 240 DPLVERDIAAGRLCKPFEFAFPLSVGFYLVYPAERRDDDAIAAMRDWIVREA 291


>gi|310818723|ref|YP_003951081.1| LysR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391795|gb|ADO69254.1| Transcriptional regulator, LysR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 307

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 5/294 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D +RVF      GS   A  +L  S +S++R IS LE  VG++L +R  R L L+E G 
Sbjct: 4   IDAMRVFVTALDEGSLAGAGRRLGHSPASVTRAISFLEAHVGVQLLHRTTRSLRLSEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       V  +LE   +        P G L +   +  G ++L+  L  FL   P +  
Sbjct: 64  RYAAACRRVLTELEEADMLAAGERAAPLGMLTLTAPLVSGAHILRPILDAFLDTQPAVTA 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+L ++ +++  +  D A+R+   +  SSL+  +L  +     A+P YL +       +
Sbjct: 124 RLLLLDRPVNLLDEGIDVALRIAH-LPDSSLVAIRLGEVRKVVCASPAYLASRPPLSEPR 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H  I       +    F        P        L VN   + +   V G G+  +
Sbjct: 183 DLAAHACIAMTQ-FGQDSWSFPPAQGSHAPRHVRLAPRLLVNGVEAAVASAVEGHGVTRV 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             Y V +      LV ++ +   P   V+   PE   +  K++AF +F   K +
Sbjct: 242 FSYQVAEEVRAGRLVVLLPEAEPPPLPVHLIAPEGRLSVPKVRAFVDFAVPKLK 295


>gi|298293420|ref|YP_003695359.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929931|gb|ADH90740.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 306

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 125/297 (42%), Gaps = 9/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  VAR+G    AA QL L  +++ R++  LE  +G KL  R   G  LT  
Sbjct: 1   MDWDHLRIFLAVARAGQMLAAARQLGLDHATVGRRLGVLEASLGSKLIERRTTGSELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L      V  ++   Q  L    +  +G +RI      G   L   L      +P +
Sbjct: 61  GERLLAHAERVETEMLQAQAALGNVDLALAGTVRIGAPDGFGTYFLAPRLGRLAEEHPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL    +   +     D A+ L++P +   L+ RKL    +  YA+  YL+       
Sbjct: 121 TIQLAPLPRSFSLPKREVDIAVTLQRPSE-GRLVARKLTDYTLGVYASRGYLERTGAIDG 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             +L    LIT+  DL+     D+           E     L+  S +  M+    G+G+
Sbjct: 180 TGDLAGRLLITYVPDLVYSPALDY------FEAFREIEARRLECASVVGQMEAVRAGAGV 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +L DY  + +  LV+++ ++     + +      + +  ++    +FI    R+ +
Sbjct: 234 GILHDYAARTHGELVQVLPELSF-RRSYWLVTHADIHDLRRISEVEDFIAGAVREAR 289


>gi|295690757|ref|YP_003594450.1| LysR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295432660|gb|ADG11832.1| transcriptional regulator, LysR family [Caulobacter segnis ATCC
           21756]
          Length = 289

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 122/289 (42%), Gaps = 16/289 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L ++Q++IS Q+ GLE  +G  LF R  RGL LT++G 
Sbjct: 8   LNALRAFEASARHLSFTKAAIELCVTQAAISHQVKGLEARLGATLFRRLPRGLALTDEGL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L     E + +L+ T    +   V     L +          L   L  F   +P + +
Sbjct: 68  ALLPSVRESFDRLDDTLARFEGGRVTE--VLSVGVVGTFAVGWLLPRLPAFREAHPFVDL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L  +N   D++ +  DCAIR        +     L    M    AP   +    P   Q
Sbjct: 126 RLFTNNNRADLAGEGLDCAIRFGDGAWHGTEAA-PLFAAPMSPLCAPAVAERLSGP---Q 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +  L+       +  +  +W A     +  P I     +S   +++  + G G+AL 
Sbjct: 182 DLFRETLL----RSYRAADWPDWFAAAG--LSPPPIRGPVFDSSWVMVEAAIQGLGVALA 235

Query: 245 -PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            PD  ++D     LVR  E  +      +  + ++   +  LKAF  +I
Sbjct: 236 PPDMFMRDLAQGRLVRPFEIEVGAGR-YWLTWLKSKAPSPALKAFLAWI 283


>gi|239833665|ref|ZP_04681993.1| HTH-type transcriptional activator ampR [Ochrobactrum intermedium
           LMG 3301]
 gi|239821728|gb|EEQ93297.1| HTH-type transcriptional activator ampR [Ochrobactrum intermedium
           LMG 3301]
          Length = 293

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 12/295 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LRVF VV R  +F  AAE+L ++Q+++++QI GLE E+G+KLF R  R L +TE  
Sbjct: 6   SLNGLRVFEVVTRHLNFRLAAEELGVTQAAVAQQIRGLEAELGLKLFERQPRTLVMTEAA 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                     +  L      L+         L ++ T       L   L EF   +PDI+
Sbjct: 66  RAYIASVRRAFDLLSEATEMLRPEPQH----LTVSVTPTFASKWLIPRLAEFTQAHPDIE 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++  +K  +   D  D A+R  +P     L    L    + A A+P  ++   +P   
Sbjct: 122 LRIVASDKVANFQTDAVDLAVRYGEPPFGPGLNAELLFEHVIVAVASPVLVERLGDPGLP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           + L ++ L+              +L               + N     +   + G G+AL
Sbjct: 182 ENLQRYPLLHDAHNF-----WPRYLEKAFPRGVSASPKNTRFNQTSLAIDAAIAGHGLAL 236

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              + V+      +LV+ +   +      Y       ++   ++A + ++   +R
Sbjct: 237 ASRFFVEKEIAAGSLVQALATELRVGADFYAVSLRKPRHPESVEAVKGWLKSASR 291


>gi|158424634|ref|YP_001525926.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158331523|dbj|BAF89008.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 330

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/281 (24%), Positives = 121/281 (43%), Gaps = 9/281 (3%)

Query: 1   MSF---DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           MS    DW+  R F  V R+GS + AA +L L+Q ++ R+I  LE  +G  LF R   GL
Sbjct: 25  MSLLASDWENQRAFLAVLRTGSLSAAARELGLAQPTVRRRIEALEQALGTPLFTRSPAGL 84

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
             TE    L      +       Q        + SG +RI  +  +G  +L G ++  + 
Sbjct: 85  LPTEAARTLGPHAEAMAAAAAAFQRAASGPRAEISGTVRITASDMIGTQVLPGLIEPLMA 144

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +P + +++ L N+  D+    AD A+R+ +P Q S+L+ R +  + +  +A P +++  
Sbjct: 145 RHPRLTLEVHLSNRTQDLLRQEADIAVRMVRPTQ-SALVIRAIGIVRLGLFATPAFVERH 203

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P  + +L ++ LI   D     +     L   D P         + +++ +       
Sbjct: 204 GMPERLSDLSRYPLIG-PDRDAADLRATEQLLGPDVPGAL----TYRTDNHPAQFAAVRA 258

Query: 238 GSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALK 278
           G GI +    +    P L+ I+ +        Y    E LK
Sbjct: 259 GLGIGVCQVNLAARPPALIPILPEAFEMRLDTYLVMHEDLK 299


>gi|172065090|ref|YP_001815802.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997332|gb|ACB68249.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 296

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 121/289 (41%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 13  LLVFEAAARHESYTRAADELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 73  VELSGALGRIRGATLQ-AMSHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-PLSIQEL 186
                ID   D  D AI +        L   +L    + A A+P      +    +    
Sbjct: 132 SRIGGIDFHTDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIASPDAAGRRKAGQRTPAWA 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
               L+    +         W +       E RI    ++ S+  ++Q    G GI L+P
Sbjct: 191 VGQTLLG---VTSNQHAWAEWFSHFGLDHREMRIGPSFELTSH--LIQAVRAGMGIGLVP 245

Query: 246 DYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V+D      LV I  D IT   + Y  YP        L AFR ++ 
Sbjct: 246 KVLVEDELSRNELVSI-GDAITSQRSYYLVYPPENDTLPSLVAFREWLL 293


>gi|91782795|ref|YP_558001.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686749|gb|ABE29949.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 305

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 115/293 (39%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F    R  SFT AA +LHL+QS+ISRQI+ LE  +G  LF R  R L LT  G 
Sbjct: 9   LQCLVAFESAVRHASFTKAAAELHLTQSAISRQIAQLEDFLGRSLFVREHRALRLTIAGE 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +    +        +++ +       +L IA +  +    L   L  F   +P+++I
Sbjct: 69  GYAKHVQWLLASCSEATLDVMKRYGDM--ELTIACSSGVAVLWLTPRLGAFRAAHPNVRI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I+ +    +S    D  +   +         R+L    ++   +P YL      L+  
Sbjct: 127 RMIVRDGLASLSPAEFDVGLYYIRQRAEPHFTARRLFDEDVYPVCSPGYLA--GRVLTPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L    L+   D   + M    W       +     + + VN Y  ++Q  +LG G+ L 
Sbjct: 185 GLVHETLLVQEDGQRQWMSWSEWFRLNHVQMPASPQAVV-VNHYPQLVQMAILGQGVVLG 243

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +++        LVR  +   +     Y   P         + F  ++F +A
Sbjct: 244 WRHMIDACLSEGLLVRATQASASHGGGYYVVSPNDRSQNQAARLFTRWVFEQA 296


>gi|229069933|ref|ZP_04203212.1| Transcriptional regulator, LysR [Bacillus cereus F65185]
 gi|228713179|gb|EEL65075.1| Transcriptional regulator, LysR [Bacillus cereus F65185]
          Length = 300

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 135/305 (44%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPTAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLRNELDIGITF-LPVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F   +   
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFIEQLKST 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|107027728|ref|YP_625239.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116693561|ref|YP_839094.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105897102|gb|ABF80266.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116651561|gb|ABK12201.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 327

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 118/293 (40%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT  G 
Sbjct: 29  FELMETFVRIVEAGSLSAAAVQLHTTQPTISRRLQALENSLGMRLLQRTTHTMRLTVDGE 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +   E+       + +L+ +  +P G LR+A     GQ      L +FL  YP + +
Sbjct: 89  RCFKQAKELLASWAAFEADLRGAQEEPDGLLRVAVPHAFGQQRFVAPLAQFLRDYPRVSV 148

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D      DCAI++ +P     ++  +L  +     AAP  L     P    
Sbjct: 149 EWLLQDEVRDFVGSGIDCAIQVGEP-TDPGVVAIRLTKVPRFVVAAPSVLNGADVPADPD 207

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     +         +   +      R I       +   +  ++    +LG G  + 
Sbjct: 208 ALAALPWLALRTYYRTELALTHAATGDTRRIAI--RPRITTANLYALRSAALLGVGACVG 265

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +++ D+    +LV +  +       VY  YP A     +L  F   +    
Sbjct: 266 SSWMLADDLARGDLVHLAPEWQAAPLPVYLTYPHAQFYPSRLVRFAAMMREAV 318


>gi|323491522|ref|ZP_08096701.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323314098|gb|EGA67183.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 310

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 123/297 (41%), Gaps = 13/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  FY  A+ GSF  AA++L +S ++IS+QI  LE  +G  LF R  R + LT +G 
Sbjct: 8   LQGLYYFYTAAKFGSFKRAADELFVSAAAISQQIRQLEESLGADLFIRQHRKVVLTMEGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L       +  L+    ++ +       +L I+T     Q+ L   + +F   +PD+++
Sbjct: 68  VLFEQAMRGFEHLQQGVRQINQDPNPN--QLSISTLPSFAQHWLVPKIGDFRNQHPDLEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   ++  D      D  IR   P    +L    L    ++    P Y +       I 
Sbjct: 126 MIEPTSQLADFQNSSLDLCIRYG-PGNYPNLNAELLFEELLYPVCHPIYQEQHG----IY 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     +T  DLI     D +W   ++          L+ N    +++  +   G+AL 
Sbjct: 181 DLSD---LTGADLIEDYWRDLDWGIWLNNAGHSTSKPTLKYNGSHFVLEGALSVQGVALA 237

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
              + K   D   LVRI     T  +  Y C P A     K+K F  +IF +A+  +
Sbjct: 238 KHTLAKRYIDEGKLVRIGNLAQTTDYNYYLCAPRAYFKRDKIKRFSEWIFEQAKQHQ 294


>gi|315634420|ref|ZP_07889707.1| glycine cleavage system transcriptional activator [Aggregatibacter
           segnis ATCC 33393]
 gi|315477010|gb|EFU67755.1| glycine cleavage system transcriptional activator [Aggregatibacter
           segnis ATCC 33393]
          Length = 301

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 125/292 (42%), Gaps = 14/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q++IS QI  LE  +G+ LF R  R L LT+ G 
Sbjct: 8   LNSLKAFESAARFLSFTKAADELFVTQAAISHQIKILEDFLGVTLFKRKNRALELTDFGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +   +++ H+L     +L          L I+     G   L   L EF  LYPDI++
Sbjct: 68  AYYADITKILHRLAEATDKLFALKNDKH--LTISVPQTFGIQWLVPRLSEFNKLYPDIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           +L   ++D  +     D AI   K     +L   +LV   +   AAP  L    +P+   
Sbjct: 126 RLKGVDQDEGLLSQDIDIAIYYGKGNWD-NLQVDRLVEEDLLVLAAPKLLAQ--KPIHQP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           Q+L  H L+             N+LA  +  I +  I     +     +Q  +   GI L
Sbjct: 183 QDLKHHTLLHI-HARDNWQHMANYLALEELNIQQGPI----FSHTFMALQAAIHEQGIVL 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               + +   DN NL  + +  +    + Y        N  ++ AFR++I  
Sbjct: 238 ANRILAQQELDNGNLQPVFDTHLRDPKSFYVVNHLDNSNDERIVAFRSWIIQ 289


>gi|197295530|ref|YP_002154071.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|195945009|emb|CAR57632.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 310

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 116/293 (39%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L++F   A  GSF+ AA +  L    +S  I  LE E+  +LF R  R L LT +G 
Sbjct: 4   LEDLQLFVRTAALGSFSSAAREADLLPGQVSAAIQRLERELDTRLFARSTRSLKLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      EV   +   +  L        G LRIA   D+G+N L   L  F   +P + +
Sbjct: 64  QYLPYAEEVLSTIHEGRERLHGDKQALQGTLRIAAPSDIGRNALLSWLGVFRDAHPKLVL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLV-TIHMHAYAAPHYLKNCREPLSI 183
           +L L +   D+  D  D AIR   P +++S +   L         A+P Y+K    P S+
Sbjct: 124 RLSLSDHVTDVFRDPVDVAIRYGAP-EAASYVALPLAEDNRRVLVASPGYVKRYGAPASL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H+ + F  ++   + D                  L  +      ++ V G GIA 
Sbjct: 183 DELVLHDCLPF--VLSGRVYDRWVFPASGVRRQVTVKGVLLCDDAEIARRWAVEGRGIAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V D+     L  ++ +    +  +    P   + +  ++     +  +
Sbjct: 241 KSWLDVHDDVCAGRLNVLLPEQRGEAAPLSLVCPHRRQFSPAVRYLHAHLRER 293


>gi|163794578|ref|ZP_02188549.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
 gi|159180302|gb|EDP64825.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
          Length = 293

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 117/293 (39%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L  F+VVAR+GS   AA +L ++  ++S++I  LE+  G +LF R   G T +  G+
Sbjct: 5   LDLLHTFFVVARAGSMKAAAAELGVTPGAVSQRIRELESRSGRRLFERGRAGTTPSSAGA 64

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+      +  LE    EL +S      +L+I          L   L  F   +P + +
Sbjct: 65  LLYAAVGNAFGTLEAISTELSDSGRGS--RLQITVMPSFAATWLIPRLGRFNAAHPAVTV 122

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D + +D+  +  D AIR     +   L  R + +  M   A+P  +       +  
Sbjct: 123 SIETDTRVVDLRKEPIDLAIRHGLG-RYPDLETRWIASPEMIVVASPGLIAGSLPVTNPA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +      + F  L  +   ++               +    +    +++    G G+AL+
Sbjct: 182 D-----CLRFPLLQDRDRRNWRLWFEAQGVDPSGMRAGSSFSDDQLLVRAAAHGQGLALV 236

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            D    +   +  LVR+++      F  Y     A      ++AF +++  +A
Sbjct: 237 RDLYAAEEIADGRLVRVLDTTWPTEFAYYLVGLPATFERPAVRAFASWLLAEA 289


>gi|77458938|ref|YP_348444.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382941|gb|ABA74454.1| putative LysR family transcription regulatory protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 323

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 128/296 (43%), Gaps = 7/296 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L+VF   A +GSF+ AA  L +S +  S  +  LE  +G +LF R  R L L++ G +
Sbjct: 28  DDLQVFVTTAAAGSFSAAARLLDISPALASGAVQRLEGSLGARLFVRSTRRLRLSDDGER 87

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +    LE  +I L E   + +G +R++   D+G+N+L   L EF  L+P + +Q
Sbjct: 88  YLSHARQALEALENGEIALSEGRDEIAGTIRLSIPSDIGRNVLLRWLDEFQQLHPKVLLQ 147

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSIQ 184
           L + ++  D+  +  D +IR    +  SSL+   L         A+P YL    +P + +
Sbjct: 148 LRVSDQVADLVGEQLDASIRYGL-LADSSLVSLALAPSNRRTVCASPDYLARHGQPATPE 206

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  HN + F  ++ +   +     + D             +    + ++ V G GI   
Sbjct: 207 ELGNHNCLRF--VMGEQTYERWSFHSADGVRTVQVTGDRVSDDADIVRRWAVAGFGIVYR 264

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               V D+     LV +    +     +    P     T  ++A R F+  +   +
Sbjct: 265 SKIDVLDDLRSGRLVELFPADVGQPAPLQLVCPHRTSLTPAVQALRTFLAQRFERY 320


>gi|99082439|ref|YP_614593.1| LysR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038719|gb|ABF65331.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040]
          Length = 292

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AA+ L +  +++ R I  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARLGTVSGAADVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+    + SG+L + T++     +L   L EF  L+PD+ 
Sbjct: 63  LDLLRVAQATDDQFSQLVGRLKGQGDEVSGEL-VVTSLSSMAPMLAPALAEFQQLHPDLV 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+ +  ++   +    A  A+R     +    + +  V   +  YA+  Y++        
Sbjct: 122 IRYLTGDRLFRLEYGEAHVALRAGAAPEQPDNVVQPFVAQRLALYASREYVERHGMLKGQ 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            ++  H  I   +   +   +  WL    R          + +  ++  Q    G+GI  
Sbjct: 182 DDMVNHRFIASDNENTRAPFE-RWL----RSTIPAENIVFRCSDAVAGHQAIRAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  +    +P+LV +M+     S  ++      L  T K+++F  F+   A+ W
Sbjct: 237 VSLWEAASSPDLVMMMDPHDEWSGKIWLVTHVDLHRTNKVQSFVRFLKEHAKSW 290


>gi|307728705|ref|YP_003905929.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307583240|gb|ADN56638.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 310

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 118/293 (40%), Gaps = 5/293 (1%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L++F   A  GSF++AA +  L    +S  I  LE E+ ++LF R  R L LT +G 
Sbjct: 4   LEDLQLFIRTAALGSFSNAAREADLLPGQVSAAILRLERELDVRLFARSTRSLKLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      EV   L   +  L        G LRIA   DLG+N L   L  F  L+P + +
Sbjct: 64  QYLPYAQEVLSMLHEGRERLHGERHALQGTLRIAAPSDLGRNKLLQWLGAFRDLHPKLTL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +   D+  D  D AIR     Q+S +     V       A+P YLK    P S+ 
Sbjct: 124 RLSLSDHVTDVFRDPVDLAIRYGAVEQASYVALALAVNNRRVLVASPEYLKRRGAPASLD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ + +  ++   + D     +            L  +      ++ V G GIA  
Sbjct: 184 ELVLHDCLPY--VLGGRVYDRWSFPSNGVRRQVTVKGTLLCDDAEIARRWAVEGRGIAYK 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               V D+     L  ++ D    +  +    P   + +  ++     +  + 
Sbjct: 242 SWLDVHDDVIAGRLQVLLPDQPGETAPLNLVCPHRRQFSPAVRYLHAHLSERV 294


>gi|167841448|ref|ZP_02468132.1| transcriptional regulator, LysR family, putative [Burkholderia
           thailandensis MSMB43]
          Length = 301

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 127/293 (43%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   AR G+FT AAE+L+++Q ++S+Q+  LE+ +G++LF R A+ L LT  G 
Sbjct: 9   LQCLVFFDAAARHGNFTRAAEELNVTQGAVSKQVVKLESFLGMQLFVRDAKALHLTRAGQ 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  ++          + +        + IA         L   + +F   YP++ I
Sbjct: 69  AYADRIHDMLTSCAEATAFVMKEPSPH--SITIACASGTAGMFLTPIIADFSREYPNVAI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++     +++    D  +   + +    +   +++   +HAY AP YL   R  +S Q
Sbjct: 127 RILVREGVFNLNTAEFDIGVYYIRDVPPPGMSGVRIIEEEVHAYCAPGYLGRRR--VSPQ 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL    L+   +   + M   +W    D  I       +  NSY  ++Q  + G G+ L 
Sbjct: 185 ELTSATLLVAEEQQRQWMSWRDWFHLCDSEIAYKPSRTITANSYPVLLQLALRGHGVLLG 244

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + ++    ++ +LV   +   +        +P+  ++T  +  FR ++  + 
Sbjct: 245 WNQMITPLVESSDLVLASDASASFGGAYQLVWPDDRRDTAAVAHFREWLLKRV 297


>gi|163733908|ref|ZP_02141350.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
 gi|161393019|gb|EDQ17346.1| transcriptional regulator, LysR family, putative [Roseobacter
           litoralis Och 149]
          Length = 293

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 125/297 (42%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +WD+++  + VAR G+ + AAE L +  +++ R +  LE  +G+KLF RHARG T T
Sbjct: 1   MMNNWDEIKTAFQVARMGTVSGAAEVLGVHHATVIRHVDALEGRLGVKLFQRHARGYTAT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L RV      +       ++    + SG L + + IDL  + +   L  F   YP
Sbjct: 61  EAGQDLLRVAQATDDQFHQLAGRIKGRGNEVSGDLVVTSLIDL-SSRMVPVLVAFQNAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ ++ +   +   +    A  AIR          + ++     +  +A   Y+     P
Sbjct: 120 DVVVRYLTGERLFRLEYGEAHVAIRAGTVPDQPDNVVQEFRHHRVALFATKDYIAEYGRP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++    H  +       +    F      + P    R    + +   +  +  + G+G
Sbjct: 180 NGVKSFGDHRFVAHDAENNRA--PFEQWLRQNVPASSIR---FRSSDTRAQREAILEGAG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           I  LP +  +  P LV +  +    S  ++      L  T K++ F +F+   A++W
Sbjct: 235 IGFLPAFEARSRPELVEVHPEQEGWSGPLWLVTHVDLHRTTKVQTFLSFVKDAAQEW 291


>gi|262396295|ref|YP_003288148.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262339889|gb|ACY53683.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 305

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/283 (21%), Positives = 114/283 (40%), Gaps = 8/283 (2%)

Query: 12  YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTS 71
             +    S   AA++L+ S + +SRQ+  LE  + ++L  R  R   LT  G + ++   
Sbjct: 13  VALCEERSIAGAAKRLNCSNAHVSRQLKQLEEILSVQLIQRTTRQFNLTYDGLRFYQQVK 72

Query: 72  EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK 131
           ++    E    E   ++   SGKLRIA +   G  LL   L EF L +P + +++I    
Sbjct: 73  QLLEGAEQI-NEQVMANEIVSGKLRIAASASFGAALLSQTLIEFRLQHPQVSVEVIFTET 131

Query: 132 DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL 191
            +D+     D A            +  +L T+H    A   YL +     + ++L     
Sbjct: 132 PLDLIEAGFDIAFYFTD-TPPEGYVGHQLRTLHCKPIAHRSYLADKPNVSTPEDLGDLEH 190

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD 251
           I +        +         +       S L  N   S++   + G G+A+L ++ + +
Sbjct: 191 ILYKSRDLGLDKWTFTHKQTQQQCSIELESTLSFNLVQSMLDATLAGCGVAMLDEFALAE 250

Query: 252 -----NPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRN 288
                   LV ++ D  T +   +Y  YP+      + +AF +
Sbjct: 251 LEPAQKEQLVSLLPDWQTDAILPLYLLYPKREHLPRRTRAFID 293


>gi|330821873|ref|YP_004350735.1| transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373868|gb|AEA65223.1| transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 315

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 113/293 (38%), Gaps = 7/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F   A  GSF++AA +  L    +S  I  LE E+ I+LF R  R L LT +G 
Sbjct: 4   IDDLGLFVRTAALGSFSNAAREAGLLPGQVSAAIQRLERELDIRLFARSTRSLKLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      EV   L   +  L        G LRI+   DLG+N+L   L EF   +P + +
Sbjct: 64  QYLPYAQEVLATLSEGRDRLHGERQVLRGSLRISAPSDLGRNVLPRWLGEFREAHPGLVL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
           +L L ++  D+  D  D A+R     +  S +   L         A+P YL     P S+
Sbjct: 124 KLSLSDELADVFRDPVDVALRYGLA-EHGSFVALPLAEHNRRVLVASPDYLARHGRPASL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL  H  + F  +    + D       +          L  +      ++ V G G+A 
Sbjct: 183 DELGAHRCLLF--VRGGRVYDRWVFPEGEGRRLVAVGGGLHCDDADLARRWAVDGFGVAY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                V  +     L  ++ D       +    P   + +  ++     +  +
Sbjct: 241 KSWLDVHHDVRAGRLEVLVPDQPGEPAPLNLVCPHRRQFSPAVRYLHAMLRER 293


>gi|221639383|ref|YP_002525645.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|221160164|gb|ACM01144.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
          Length = 297

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  VAR+ S + A   L L  +++ R+I+ LE  +G+ LF +  +G  LTE 
Sbjct: 1   MDWDDLRIFLGVARAESLSGAGRGLRLDPATVGRRIARLEEALGVPLFAKSPQGYALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L          +     +LQ +    SG++RI         LL   L +     P +
Sbjct: 61  GQRLLAHAERAEQAVGEAAEDLQGA-AGLSGQIRIGAPDGCANYLLPQVLAQICTDNPGL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q++   +  ++S   AD AI + +P ++  L  +KL    +H  A+  YL       +
Sbjct: 120 EVQIVALPRVFNLSKREADLAIGVSRP-EAGRLRVQKLADYRLHLAASAEYLSRHPPIRA 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H L+ +   IP  + D           G         NS    + +   G+G+ 
Sbjct: 179 LEDLKAHQLVGY---IPDMIFDKELDYLTGIGSGSVP---FASNSVSVQLNWLRAGAGVG 232

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++ D+ +   P LV+I+ + ++ S + +    +      +L  F + +    R
Sbjct: 233 IVHDFAMPSAPELVKILPEALSLSRSFWLIRHQDDVRLERLNRFTDALVQGVR 285


>gi|269963868|ref|ZP_06178180.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831355|gb|EEZ85502.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 276

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 127/279 (45%), Gaps = 8/279 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R F      GSFT AA+ L ++ S +SR ++ LE  +G +L  R    ++LT  G + +
Sbjct: 1   MRSFVYTVELGSFTSAAKVLKVTTSMVSRNVTDLENHLGNRLINRSTNSISLTHVGERYY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +    +  ++E      ++ S + SG L +     L + LL   + +F   Y +I + L+
Sbjct: 61  KEAKVIIEQIENLNESFKDDSQELSGVLNVLCPKGLTECLLMPFIIDFKRKYENISLNLL 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           + +   D+S    D +IR         +L+ + +        A+P Y+KN     +  +L
Sbjct: 121 MSDDVQDLSELGYDISIRSGSLTPKDLNLVGKLITVNENVVCASPEYIKNNGSINNPNDL 180

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +HNLI   +L  K +  F+     ++   EP    L VNS  ++    +   G+A+LP 
Sbjct: 181 LRHNLIEDTNLKNKQLWSFSKDNLENKIKIEP---SLTVNSVQAVKYALLNSYGVAMLPK 237

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
            +     ++  L+ ++++       VY  Y +   NT K
Sbjct: 238 QLANKEINSGELMTLLDEYKFGERYVYALY-KNRANTPK 275


>gi|254250713|ref|ZP_04944032.1| hypothetical protein BCPG_05613 [Burkholderia cenocepacia PC184]
 gi|124879847|gb|EAY67203.1| hypothetical protein BCPG_05613 [Burkholderia cenocepacia PC184]
          Length = 323

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 117/297 (39%), Gaps = 7/297 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L VF  VA  GSFT AA+  +L   S+SR +  LET +G++LF R  R + LT  G 
Sbjct: 4   LKALEVFKAVADHGSFTRAADATNLGVPSVSRAVQDLETMLGVQLFNRTTRRVALTTAGH 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +    + V    E       + +   +G +RI          L   L  F+  +P +++
Sbjct: 64  AVLERVTGVLSSYEDLARTGSDEAGDCAGNVRIEVPAIFDTARLTSVLVRFMRAWPKVRV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   +   D   D AD AI + +    SS I R L  + +  YA+P +L+   +     
Sbjct: 124 DVRRVDHLADTLGDLADLAIVVGRSAP-SSCIARSLAAVPLGLYASPAWLERTNDLAHPL 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++     +  G                   +     + L+ N   +++   V G G+A+L
Sbjct: 183 DVPAEACLATGAQHSVWTVSHQ---ASGESVTLAARAALRTNCPHALLAAAVDGEGLAIL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P+ + +   D   LVR+++            Y        +++    ++     + +
Sbjct: 240 PNPLAQAALDRGELVRVLDAWQVAPLEACLVYRSRRNLPARVRKLTEYLLDAFGEQR 296


>gi|254419404|ref|ZP_05033128.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
 gi|196185581|gb|EDX80557.1| LysR substrate binding domain protein [Brevundimonas sp. BAL3]
          Length = 309

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 121/298 (40%), Gaps = 10/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F+ AA++L ++  ++S+QI  LE  VG  LF R ARGL LT+ G 
Sbjct: 8   LNALRAFEAAARHLNFSRAADELSVTPGAVSQQIRLLEDIVGGPLFVREARGLQLTDLGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               +  E + +L      L+E   +   ++ I+         L   + +F   +P+I++
Sbjct: 68  SSVPLLREGFERLMDASALLREPPRRK--QVSISIAPGFASKWLMPRMDDFHAAHPEIEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D +  D++    D A+R   P     L   +L+T  +    AP  +          
Sbjct: 126 WISADMEPADLTEGKVDLAVRYG-PGDYPGLTVDRLMTETVLPVCAPSLMDGEHAIRKPA 184

Query: 185 ELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L +H L+     D  P   +   WL        +PR    + N    +++  V G G+A
Sbjct: 185 DLVRHILLHDMSNDGDPSRPDWAMWLKARGVRHPDPRRGS-RFNQSSLLIEAAVSGRGVA 243

Query: 243 LLPDYIVKDN---PNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           L    + + +     LV    D      F      P     +    AF  ++  +A D
Sbjct: 244 LAKRTLAQADLASGRLVAPFPDGSEAVGFAYSVVQPRDRPPSPSATAFVAWLKRQAVD 301


>gi|91780081|ref|YP_555288.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692741|gb|ABE35938.1| Transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 301

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 114/289 (39%), Gaps = 10/289 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F    R GSF  AA +LH++  ++S+ +  LE  +G  LF R+ R +TLT    
Sbjct: 8   LNALRAFEAAGRLGSFKEAAAELHVTHGAVSQHVRLLEEWLGASLFDRYNRRVTLTPAAK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   ++ +L          +   S  L +          L   L +F   +PD+ +
Sbjct: 68  VYLEEIGPLFERLSQATARY-GVAETVSRTLSVNAPATFTLRWLVPRLAKFRAAHPDVDV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   N+ ++   +  D  IR   P        R  ++       +P  L+      S  
Sbjct: 127 NVETSNRPLESLKEDYDIVIR-GGPDTFYGYSMRPFLSEERLPVCSPALLQRVPL-RSPG 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+    L P+   D  WLA+   P   P  + L  + +   +Q  + G GIA+ 
Sbjct: 185 DLQQHTLLHTSSL-PRLWPD--WLASAQIPALRP-AATLTFDHFYLTLQAAIDGIGIAMG 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  +V  +     L         PS +     P+A     ++  FR+++
Sbjct: 241 PTALVSADLAAGRLAAPFAGPRLPSRSYCTYVPDAKFGDERVMLFRSWL 289


>gi|121997838|ref|YP_001002625.1| LysR family transcriptional regulator [Halorhodospira halophila
           SL1]
 gi|121589243|gb|ABM61823.1| transcriptional regulator, LysR family [Halorhodospira halophila
           SL1]
          Length = 318

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 129/306 (42%), Gaps = 15/306 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+    +L+VF  VAR  SFT AAE+L+L+Q ++S QI  LE +VG+ LF +  + + LT
Sbjct: 1   MNITLRQLQVFESVARHLSFTRAAEELYLTQPAVSMQIKQLEQQVGLPLFEQIGKRIYLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G ++ R    +  +L      L+      SG+LR+              L  F    P
Sbjct: 61  EAGEEVRRYAQRISAELRELADGLEALRGLNSGRLRLTVASTAN-YFATDLLAAFTRRQP 119

Query: 121 DIQIQLILDNKD---IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
            +  QL + N++     I  +  D A+ + +P +   +     +   +   AAP +    
Sbjct: 120 GVTFQLEVTNREGVIRRIQDNEMDLAV-MGRPPEGLDVAAEAFMPNPLVIIAAPDHPLAD 178

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             P+ ++ L     +    L  +     N +  V    G      L+++S  +I Q    
Sbjct: 179 GSPIPLERLQDELFV----LREQGSGTRNAVQRVLEERGMNLRGGLEMSSNEAIKQSVQA 234

Query: 238 GSGIALLPDYIVKDNPNLVRI----MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G G+ ++  + V     L R+    +E         Y  +    + +   +AFR FI  +
Sbjct: 235 GLGLGVVSIHTVALELELGRLRVLNVEGFPL-ERQWYLVHRSGKRLSPAAEAFRQFILDE 293

Query: 294 A-RDWK 298
           A R W+
Sbjct: 294 AHRHWQ 299


>gi|115360047|ref|YP_777185.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285335|gb|ABI90851.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 323

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/294 (19%), Positives = 115/294 (39%), Gaps = 10/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+   +  S S   AA  L L+  +++ ++  +E  + ++L  R  +G+ LT++
Sbjct: 17  LDLEDLRLVRAIGASRSLASAARLLDLTPPAVTIRLQRMEARLDVRLAVRQPKGIALTDE 76

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++   E+  ++E   + +        G LR+      G+  +   +++    +P +
Sbjct: 77  GQRLYQEAVEILERVEALPVNISGDHGDVQGTLRVVAPFGFGRKYVARIVRDVQRAHPKL 136

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L L    +  S   AD  + +   ++SSS I   L        A+P Y +   E   
Sbjct: 137 EISLHLSESPLG-SASGADVVVHVG-TLKSSSWIGYPLAPNERFLCASPGYARRIGELNH 194

Query: 183 IQELDKHNLITFGDLIPKCMEDF-----NWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             +L +++ +   +              +      R         L  N    I  + + 
Sbjct: 195 PSDLARYDCLCLRENDEDVPRWHFSQPGDNKGEARRSAVIRVSGALSSNDGTVITDWALA 254

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G GI    ++ V     N  LVR++ D   P   V    P     + + + F +
Sbjct: 255 GLGIVERSEWDVAPLLANGKLVRLLPDWHLPPAPVTALLPSRTGRSARQRVFLD 308


>gi|11342601|emb|CAC17148.1| transcriptional activator [Ochrobactrum anthropi]
          Length = 291

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 125/295 (42%), Gaps = 12/295 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               + LR F   AR  SFT AA +L ++Q+++S Q+  LET + + LF R  RGL LT 
Sbjct: 5   HLPLNSLRAFEASARHLSFTKAAIELCVTQAAVSHQVKSLETRLNVTLFERLPRGLMLTS 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L     + + ++  T    +    +    LR+     L    L   L++F   YP 
Sbjct: 65  EGETLLPTLKDAFDRIAGTLERFEAGHYREI--LRVGAVGTLAVGWLLPRLRDFQNRYPF 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L  +N  +DI+ +  D AIR         +   +L+   +     P   +  R P+
Sbjct: 123 IDLRLSTNNNRVDIAAEGLDYAIRFGSGAWH-GIDATRLLEAPLSPLCIPELARELRTPV 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H L+       +  E   W          P    +  +S L++M+  + G+GI
Sbjct: 182 ---DLARHTLL----RSYRADEWTQWFVAAGVTGDMPLPRSIMFDSSLAMMEAAMQGAGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL P  +         I++   T     + +    ++   T  + AFR+++   A
Sbjct: 235 ALAPPLMFSRQLLSETIVQPFETTVTMGSYWLTRLQSRTETQAMVAFRDWLTDAA 289


>gi|283784556|ref|YP_003364421.1| LysR family transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282948010|emb|CBG87574.1| putative LysR-family transcriptional regulator [Citrobacter
           rodentium ICC168]
          Length = 307

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 122/295 (41%), Gaps = 12/295 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               ++ F  VA +GS   AAE L+++ S++S QI+ LE  +G KLF R ++G+ LT  G
Sbjct: 14  SLRNIQAFIEVADTGSLNTAAENLNITASAVSHQIASLENFLGKKLFSRSSKGVKLTTIG 73

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +  +  S   + +     ++     +    LRI +    G   L   L  F   +P+++
Sbjct: 74  ERYLKEVSGALNMIGQATNQVIHDIHQDY--LRIHSAPSFGLLWLMPRLDRFRQAWPELK 131

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L    + I  S D  D  IR     Q  +L+ + +    M  Y +  +L++     + 
Sbjct: 132 ISLTCSYESIQFSRDNIDIDIRHGLA-QWPTLVVKTIRNERMLPYTSQAWLESHPL-QTP 189

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L   +LI     +      F+W     +  G  +      +     ++   +G G+ L
Sbjct: 190 EDLLSCDLIHSDSTLINWNNWFSW----HKVRGFNKNFIFNFDRSYMSIEAARMGLGVIL 245

Query: 244 LPDYIVKDNPN---LVRIM-EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             + +  ++     L  +  +DV       +   P   +   K+KAF  +I  + 
Sbjct: 246 ESNLLAGESLRKQHLRPVFADDVSMSVNAHHLVMPHTSEQKAKVKAFIAWISEEL 300


>gi|77463520|ref|YP_353024.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462376|ref|YP_001043490.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|77387938|gb|ABA79123.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
 gi|126104040|gb|ABN76718.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 297

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  VAR+ S + A   L L  +++ R+I+ LE  +G+ LF +  +G  LTE 
Sbjct: 1   MDWDDLRIFLGVARAESLSGAGRGLRLDPATVGRRIARLEEALGVPLFAKSPQGYALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L          +     +LQ +    SG++RI         LL   L +     P +
Sbjct: 61  GQRLLAHAERAEQAVGEAAEDLQGA-AGLSGQIRIGAPDGCANYLLPQVLAQICTDNPGL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q++   +  ++S   AD AI + +P ++  L  +KL    +H  A+  YL       +
Sbjct: 120 EVQIVALPRVFNLSKREADLAIGVSRP-EAGRLRVQKLADYRLHLAASAEYLSRHPPIRA 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H L+ +   IP  + D           G         NS    + +   G+G+ 
Sbjct: 179 LEDLKAHQLVGY---IPDMIFDKELDYLTGLGSGSVP---FASNSVSVQLNWLRAGAGVG 232

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++ D+ +   P LV+I+ + ++ S + +    +      +L  F + +    R
Sbjct: 233 IVHDFAMPSAPELVKILPEALSLSRSFWLIRHQDDVRLERLNRFTDALVQGVR 285


>gi|153840561|ref|ZP_01993228.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149745776|gb|EDM56906.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
          Length = 239

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 116/241 (48%), Gaps = 6/241 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             +   +R F ++A+ G+FT AAE L +S+S +SRQISGLE ++G+ L  R  R L LT 
Sbjct: 4   KVNLADIRSFVLIAQLGNFTKAAEALSVSRSHVSRQISGLEAQMGVTLLNRTTRTLRLTH 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTID-LGQNLLQGNLKEFLLLYP 120
            G + +    +    ++   I   + + +  G +R+      +G++++   + EF+  YP
Sbjct: 64  AGERFYHDCEKALRDIDQALIAAVDDTQEIRGVIRVNCVGGYIGEDIIAKYVCEFMQQYP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L   +  ID+  D  D A R+ + +  +  + RKL+T+ M   A+P Y++    P
Sbjct: 124 SVSIDLDFSSPRIDLIEDQFDVAFRMGE-LDDAGFVARKLMTVDMVTLASPSYVQQYGMP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              +EL +H  +T          ++      +          L+  +  +++   + G+G
Sbjct: 183 KHPKELAEHRTLT----GSVTRWNYRKAENPNDHADVVVKGNLRCKNGRALVMGALHGNG 238

Query: 241 I 241
           I
Sbjct: 239 I 239


>gi|49477701|ref|YP_036558.1| LysR family transcriptional regulator [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49329257|gb|AAT59903.1| transcriptional regulator, LysR family [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 300

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 132/295 (44%), Gaps = 16/295 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKN 176
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       + L  
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISIPLYESELIIVVPTGHQLAE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
               +SI EL  + LI    L+PK       + +  +         L++++  S++Q   
Sbjct: 181 HNH-VSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPKPILEISTMESLIQMVS 235

Query: 237 LGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F 
Sbjct: 236 KGMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFI 288


>gi|294141722|ref|YP_003557700.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328191|dbj|BAJ02922.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 295

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 129/301 (42%), Gaps = 21/301 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   AR  SF+ AA +L ++  +IS+QI GLE+ VG+ LF R  R L LT+   
Sbjct: 8   LNSLLAFESAARHLSFSKAANELFVTHGAISKQIKGLESFVGVPLFIRQHRKLLLTDDAQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           +     E++   ++    L I     L  N L   ++EF   YP + +
Sbjct: 68  RYFIQVQSALQTINHATDEIKSQQMRAQ-TLSINVLPSLTINWLIPRMEEFKRRYPHLYV 126

Query: 125 QLILDNKDIDISMDYADCAIR-LRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L + +  +D      D AIR  +     ++ I  KL+   +    +P   +  +   ++
Sbjct: 127 DLSIGDFAVDFDNSRCDIAIRSAKHEPTDANFI--KLMDEDLCLVCSPLLAEQLK---TV 181

Query: 184 QELDKHNLI---TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++K  L+   T  +L P   +      T D+  G        +  +  + Q  V G G
Sbjct: 182 DDINKMTLLKHTTRPELWPYWSQQVGLTLTTDKKFG--------MEHFYMLSQAAVGGMG 233

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +AL+P + ++D   + +LV       T  +T Y   P++     K +AF +++      +
Sbjct: 234 VALIPRFFIEDQLADASLVIPFNTGFTSPYTYYVLTPKSSNLPLKAQAFIDWLLEIFAPY 293

Query: 298 K 298
           +
Sbjct: 294 R 294


>gi|116691639|ref|YP_837172.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116649639|gb|ABK10279.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
          Length = 309

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 130/299 (43%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F  V  SGSF  AA +L +++S++++ ++ LE  +G +L  R  R L LT
Sbjct: 1   MDERLRGVAEFVDVVESGSFAAAALRLGMTRSAVAKIVARLELRLGARLLQRTTRQLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +     +  +L  T+  L     +P+G++R++  +  G+  +   ++  +  +P
Sbjct: 61  DEGLVYYEQCRRLLAELGETEAALDAGRREPAGRVRVSVPVLFGRQCVAPVVRRLVERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I +   ++  D+  D  D A+R+ +   +S+L+ RKL    M   A+P YL     P
Sbjct: 121 RLEIDMSFSDRVADLVNDGFDLAVRIGELADTSALVGRKLGVQRMGICASPAYLARHGRP 180

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             + EL  H  I +   G   P  +   +      R  G  R   LQ  +  +     + 
Sbjct: 181 SGLDELASHVGIAYSRGGQPTPWRVIGADGAVHDHRAAGRLRFDDLQAIADAAAAGAGLA 240

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 LP +++     +  L  +M+        V+   P A     K++A  + +  +
Sbjct: 241 -----WLPCWLMAPYLRDGRLALVMDSNSVSGAEVFAVRPAARHVPSKVRAVVDALVDE 294


>gi|330953304|gb|EGH53564.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae Cit 7]
          Length = 274

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 11/272 (4%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           +S + +S++I  LE  +G+ L +R  R +++TE G +++     +   ++    ++    
Sbjct: 1   MSAAYVSKRIRLLEQGMGVVLLHRSTRQVSITEDGERVYEWARGMLDSVQQMGDQVAALH 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
            +PSG LR+ ++   G+  +   L E    YP + I+L + ++ +D+  +  D  IR+  
Sbjct: 61  GEPSGLLRVVSSQGFGRRFVAPALSELAARYPKLDIRLDIQDRLVDLIEEGVDLDIRVGN 120

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
            I +  L  R L +      A+P YL     PL++ EL  H+ +   +           L
Sbjct: 121 EI-APHLRARHLASNWRVLCASPGYLNRHGTPLNLGELANHDCLVIKERDRPFGIWH--L 177

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITP 265
                         L  N      Q+C+ G G+ L   + V+       LV+++      
Sbjct: 178 NGPQGAETVKVTGSLSTNHGEIARQWCLDGRGVLLRSLWDVRTDLAEGRLVQVLP-YYRQ 236

Query: 266 SFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
              ++  +   L ++ K++    F+    RD+
Sbjct: 237 DADIWAVHTSPLMSSAKVRVTVEFL----RDY 264


>gi|312962119|ref|ZP_07776614.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311283671|gb|EFQ62257.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 306

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 129/298 (43%), Gaps = 8/298 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++VF  VA    F  AA +LH+S  S++R I+ +E  +G +L  R  R L LTE
Sbjct: 1   MDRFQEMQVFVSVAEEEGFAAAARRLHISAPSVTRAIAAMEERIGTQLLARTTRSLHLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  +L+  +         P G L +   +  G+  +   L ++L L+P 
Sbjct: 61  AGQRYLEDCRRILSELDEAEQSASGGYSLPRGHLTVTAPVLFGELYIAPLLTDYLDLFPA 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +Q+  +L ++ +++S +  D AIR+   +  S     K+  +      AP Y      P 
Sbjct: 121 VQVNALLVDRLVNLSDEGIDVAIRIGH-LHDSQQQAIKVGEVRQVICGAPEYFARHGRPS 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             Q+L + N++         + D+++ +    P+       L V++  + +     G G+
Sbjct: 180 HPQDLSRANVVM--SSASTLLSDWHFSSDAG-PLSVRMEPRLVVSANQAAIHVAREGWGL 236

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +  Y V     +  L  ++E     +  ++  Y    +   K++   +F+  + R+
Sbjct: 237 TRVLSYQVAQRVADGELDLVLEAFEPAALPIHVVYQNTPRVPAKVRTCVDFLVERLRE 294


>gi|330822001|ref|YP_004350863.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373996|gb|AEA65351.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 303

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 119/299 (39%), Gaps = 11/299 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYR---HARGLTLT 60
           + + LR F  VAR  S+  AA +L+++ +++ + I GLE+ + ++LF+R       LTLT
Sbjct: 6   NLNALRAFEAVARHLSYPAAAAELNVTPAAVGQLIRGLESYLDVELFHRASSGPSRLTLT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           +            +  L T    L+ S  +      +          L   ++ F + +P
Sbjct: 66  DAARAALPELQGGFDLLSTAVERLRASKSRI--VFTVTVPPAFADRWLLWRVESFQVQHP 123

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
              +++ +    +D++ +  D AIR         L+   L+        +P  L+     
Sbjct: 124 YYDLRIDMSRHLVDLTAERVDVAIRYGAG-NWPDLVSTYLLRDDFFPVCSPALLEGEHAL 182

Query: 181 LSIQELDKHNLITFGDLIPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            S  EL  H LI    +    +     +WL              LQ+N   S  Q  + G
Sbjct: 183 TSPAELRHHRLIHDTSMSDFGVFPTWRSWLRKAGYANQVDCDRGLQLNDSSSAYQAAISG 242

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +G+AL    +V+ +     LV+  E   T     Y  + +  +N   + AFR ++  + 
Sbjct: 243 NGVALGRTSLVERDLAEGRLVKPFETEQTCELAYYLVHRKGRENEAPVVAFREWLLAEV 301


>gi|195940984|ref|ZP_03086366.1| LysR family transcriptional regulator [Escherichia coli O157:H7
           str. EC4024]
          Length = 248

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 9   RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHR 68
           +V+  +   GS + AA  L +S+  +SR +  +E   G +L  R  R LTLT  G K+ +
Sbjct: 8   QVYNRICELGSLSAAARALGISRPMVSRYLEQMEKWAGARLVNRSTRKLTLTAAGEKVLQ 67

Query: 69  VTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLIL 128
            T  +    +  +   Q     PSG LR+A        ++   L + L  YP ++I+L +
Sbjct: 68  KTRTLSQISQEIED--QSVKESPSGTLRVACAHFTAMQIIAPVLPDLLQSYPQLRIELDV 125

Query: 129 DNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDK 188
           +N  + +  +  D AIR+    +   +I R+L        A+PHYL +   P  +++L +
Sbjct: 126 NNHPVSLVGERIDVAIRITDNPE-PGMIARRLGECRSVLCASPHYLASRGVPEQLEDLAR 184

Query: 189 HNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           HN + +        + + +L+    P+       L  +    +M+  +   GIA+LP+
Sbjct: 185 HNCLHYSFF---AGQSWRFLSPEGEPVTTAVSGNLSASISSLLMEAAINHCGIAMLPE 239


>gi|254438692|ref|ZP_05052186.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198254138|gb|EDY78452.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 328

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 113/289 (39%), Gaps = 12/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L     V R  S T AA +L+L+QS++SR I  LE ++G++LF R  R L          
Sbjct: 38  LMALDAVVRHRSVTVAAAELNLTQSTVSRLILSLEDQLGVELFTRERRRLIPNTAALSYQ 97

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           R  +   + ++   + +        G L +A         L   L +FL  +P I + + 
Sbjct: 98  RDIARALNIVQQASMSVVA--NPLGGTLSLAVLPTFATRWLGPRLGQFLNAHPGIAVNVS 155

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                +D + +  D AI          +   +L    + A  AP + +       +++L 
Sbjct: 156 TRIGHLDFAGETFDAAIYYGLGDWD-GVNHLRLFDETVTACVAPGFAQKH-PIRRLEDLA 213

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              ++          + F     V    G      + ++ Y  ++Q  + G GIALLPDY
Sbjct: 214 GLPMLQLESRPSVWSDWFEGQGGVPYATG-----GMLMDQYSMMIQSAISGLGIALLPDY 268

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           + +       LV ++E  +      +  +P        LK FR ++  +
Sbjct: 269 LAQIEIFEGRLVPVLERNVPVRGAYWLVWPNDKVEHAPLKTFREWLGEQ 317


>gi|221197694|ref|ZP_03570740.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221204748|ref|ZP_03577765.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221175605|gb|EEE08035.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221181626|gb|EEE14027.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 330

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 117/276 (42%), Gaps = 7/276 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L +S++++S++I+ LE   G+ L  R  R + LT+ G  L   T + +  +      +
Sbjct: 49  QRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTDAGRTLVDSTRDAFESIGQHFARV 108

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E + +P G +R+   + LG+  +  +L +FL  +P + ++L L ++   ++ +  D AI
Sbjct: 109 KELAGEPRGLVRVTAPVALGRQQIVPHLPDFLRAHPGVHLELDLSDRLHSLTQEGFDLAI 168

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R       +  +  KL        A+  YL     P   +EL  H+ + +          
Sbjct: 169 RHTTTAPQTH-VAWKLCDTRSLLVASRDYLDARGAPRHPRELVDHSCLCYLRDNEPAAWS 227

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F         +  P       N+  ++ +  + G GIALLPD+  + +     LV +++ 
Sbjct: 228 FELQGRRRERVSVPVRGSFAANNSEAMREAALGGLGIALLPDFSARRDLDAGRLVSLLDG 287

Query: 262 VITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
                     ++   P +      ++A    +  + 
Sbjct: 288 WRPSGAFGDHIFAIRPYSAVVPSAVRALVRHLRERL 323


>gi|126464767|ref|YP_001045880.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|126106578|gb|ABN79108.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 313

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F WD L+ F  VARSG  + AA QL  S  ++SR+I  LE  + ++LF R+ RG  LT 
Sbjct: 3   NFTWDDLQFFLAVARSGQLSRAARQLRTSHVTVSRRIDRLEAALRMRLFERNPRGYELTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +  + E  Q+EL        G LR+A     G    +  L  F   +P+
Sbjct: 63  VGRRLIETAERMEAETERMQVELLGDGPGQRGVLRMAVPEGFGSWFSRVLLGPFTERFPN 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LI   + + +S   AD  + L  P ++S+    +++   +H YAA  YL    E  
Sbjct: 123 IALELITLPQIMSLSRREADLTVTL-DPPKASTYHSERIMDYTLHIYAAKSYLAQRPEIQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L KH  I + + +       ++L  V   I     +  + +S  + +     G G+
Sbjct: 182 TRDDLLKHPFIGYIEEMIFA-PGLDYLGEVHPGI----RANFKSSSIFNQLAATQNGLGL 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LP YI +  P+L  I+   +    T +      ++   + ++   F+    R
Sbjct: 237 CVLPFYIGRRVPDLEMILPQEVVLRRTYWLTCHRDVRPLPRERSVMAFLLEAGR 290


>gi|183599122|ref|ZP_02960615.1| hypothetical protein PROSTU_02575 [Providencia stuartii ATCC 25827]
 gi|188021346|gb|EDU59386.1| hypothetical protein PROSTU_02575 [Providencia stuartii ATCC 25827]
          Length = 300

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 131/295 (44%), Gaps = 7/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D + LRVF  VA  G+F  AA+QL +  S++SR I  LET++  +L  R  R + LT
Sbjct: 1   MSVDLNLLRVFVSVASQGNFARAAQQLSMPTSNVSRSIKQLETQLNCRLIERTTRNMRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG  L + +  +Y +L+    ++     + +G LR+    + G  LL   + +F LL+P
Sbjct: 61  EQGEILWKHSQNLYAELDDILSQISHR-ERLTGTLRLTIPSETGSLLLADIITDFALLHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + +        +D+  D  D  +   R  +  SS   + +        AAPH ++   +
Sbjct: 120 QLTLHCDTQLMPLDVINDDIDLLLTFHRGELGDSSYHSKLIKAWPSVVVAAPHLIEQTGK 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P ++ EL     I    L     + + ++   +RP      S  +VNS +      + G 
Sbjct: 180 PKNLTELANMPCI--SSLSAIAGQPWIFIDQQERPQKLNINSRYRVNSGILAKVAALKGI 237

Query: 240 GIALLPDYIVKDNPN--LVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIF 291
           G A+L     + +    L+ ++E    P    +   Y      + K+ AF  ++ 
Sbjct: 238 GYAILAMESCQPDIEQGLLELIEFAERPAPIELRAVYASRRSLSPKIDAFLQYLI 292


>gi|163761194|ref|ZP_02168270.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
 gi|162281533|gb|EDQ31828.1| transcriptional regulator, LysR family protein [Hoeflea
           phototrophica DFL-43]
          Length = 301

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 116/291 (39%), Gaps = 12/291 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F  V R G+ T AA +L L+QS++SR I  LE ++G +LF R  R L        
Sbjct: 11  RLLLAFDAVMRHGTVTAAASELSLTQSAVSRLILTLEEQLGKELFSRVRRRLVPNATAQN 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
            H+  +     ++   + L  +     G L +A         L   L  F+ L+P I + 
Sbjct: 71  YHKDIARALDIVQRASMSLVANPE--GGTLSLAVLPTFATRWLGPRLGGFMGLHPGIAVN 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L       D S +  D AI   +          KL    + A A+  ++K      SI+ 
Sbjct: 129 LSTRIGWFDFSGETFDAAIYFGQSDWRGG-EHIKLFDERVTACASRAFIKTH-NLTSIEN 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+          + F       +         + ++ +  ++Q  + G G+ALLP
Sbjct: 187 LAGLPLLHLESRPTAWADWF-----AGQGGTPSGAGGMLMDQFSMMIQAAISGLGVALLP 241

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           DY+ +   D   L  +++  +      +  +PE    +  L AFR+++  +
Sbjct: 242 DYLARIEIDAGRLEPVLKPAVPIRGAYWLVWPEDKNTSAPLAAFRSWLAEQ 292


>gi|90413271|ref|ZP_01221265.1| hypothetical D-serine deaminase activator [Photobacterium profundum
           3TCK]
 gi|90325672|gb|EAS42135.1| hypothetical D-serine deaminase activator [Photobacterium profundum
           3TCK]
          Length = 306

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 115/292 (39%), Gaps = 6/292 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F + A   SFT AAE L L+QS++S +I  LE  +G+KLF R  R + LT++G 
Sbjct: 11  LSGLHCFLIAADQMSFTRAAEVLCLTQSAVSHKIKNLEDSLGVKLFIRQPRKVMLTDEGK 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L  V ++ +   +         +++ SG   ++      Q  L   +K F+  YP ++ 
Sbjct: 71  RLKAVVAQNF--GDIAHEIRDLKTLELSGDFNVSAPPTFAQTWLMPRIKSFIDKYPALRF 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   N  ID   +  DCAI      + + L   KL+   M       Y           
Sbjct: 129 HLRTRNDLIDFQTEIFDCAIYFGHG-KYAGLHSEKLMDESMLPVCTHEYALRYNLYDRPD 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L    L+       +   +  W     R            +     +Q    G G+A+ 
Sbjct: 188 NLVMCMLLHDAAPWARAGRNDEWQYWAQRQGIILPEVGCTFDRSDLALQAAERGIGVAMG 247

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               V +      LV   +  +    + Y    + +K++ ++KAF++++  +
Sbjct: 248 RMSFVAEQLANERLVIPFDMPVKSPLSYYVVCRQDMKSSPRVKAFQDWLADE 299


>gi|114570062|ref|YP_756742.1| LysR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114340524|gb|ABI65804.1| transcriptional regulator, LysR family [Maricaulis maris MCS10]
          Length = 307

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 124/290 (42%), Gaps = 6/290 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           ++FDW+++R        GSF+ AA  L  +Q ++SRQI+ LE+++G+ LF R+ R    T
Sbjct: 6   IAFDWNQIRALLATIEEGSFSGAARALGQTQPTLSRQIAALESDLGVTLFERNRRATVPT 65

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
               +L      +    +   +     S    G++ +  T  +    L   +K      P
Sbjct: 66  GAALELVEHVRSMGEAAQRISLTASGQSSAIEGRVTVTATNIMASYYLPPIIKHIRETAP 125

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I++++I  N+  D+    AD AIR  +P +   LI R +     H YA P YL     P
Sbjct: 126 GIRLEIIASNELQDLQKREADIAIRHARP-EQPDLIARLVGETTGHLYAHPDYLDRVGRP 184

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I+++++ + I F +   + +E  N +  ++      RISC    S        + G G
Sbjct: 185 TCIEDINRLDFIGF-EQNERVIEHLNAIG-LNLTADNFRISC---GSSTVHHALAMQGLG 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +  +    ++ +  L  +   +       +      L  + +++   + I
Sbjct: 240 VTPMTRDWIEQHSELEELWPALPPIPVQTWLVTHRELNTSRRIRLVFDAI 289


>gi|196033720|ref|ZP_03101131.1| transcriptional regulator, LysR family [Bacillus cereus W]
 gi|218903571|ref|YP_002451405.1| transcriptional regulator, LysR family [Bacillus cereus AH820]
 gi|228936945|ref|ZP_04099688.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228946041|ref|ZP_04108379.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229121980|ref|ZP_04251198.1| Transcriptional regulator, LysR [Bacillus cereus 95/8201]
 gi|195993400|gb|EDX57357.1| transcriptional regulator, LysR family [Bacillus cereus W]
 gi|218537973|gb|ACK90371.1| transcriptional regulator, LysR family [Bacillus cereus AH820]
 gi|228661508|gb|EEL17130.1| Transcriptional regulator, LysR [Bacillus cereus 95/8201]
 gi|228813629|gb|EEM59912.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228822724|gb|EEM68613.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 300

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 132/295 (44%), Gaps = 16/295 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKN 176
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       + L  
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISTPLYESELIIVVPTGHQLAE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
               +SI EL  + LI    L+PK       + +  +         L++++  S++Q   
Sbjct: 181 HNH-VSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPKPILEISTMESLIQMVS 235

Query: 237 LGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F 
Sbjct: 236 KGMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFI 288


>gi|326387765|ref|ZP_08209371.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207811|gb|EGD58622.1| LysR family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 295

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW+ L  F VV R+GS + AA  L ++Q ++ R++  LE  VG  LF R   GLT T+  
Sbjct: 3   DWEDLHAFSVVLRTGSLSAAARFLGVTQPTMRRRLDALEQSVGAPLFVRSQTGLTPTDAA 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L R T  +    E              G +RI  +  +G  +L   L      +P + 
Sbjct: 63  RELGRHTGVMAVAAEAFSRAASADGTAVEGVVRITASDVVGAEVLPAVLVPLRAAHPGLI 122

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++L L N+  D++   AD A+R+ +P Q++ LI R++ T+ +  +A   YL+    P S 
Sbjct: 123 VELDLANRTQDLTRQEADIAVRMVRPAQAA-LIARRIGTVPLGLFAHRSYLRIAGVPASH 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H LI       +     +++A     +     S ++ +S L+ +     G GI +
Sbjct: 182 ADLAHHTLIG----PDRETTYLDFVAGHGLHLRRDNFS-IRTDSQLAQLSAIRSGLGIGI 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               + + + +LV +M  V  P    +    E L+   +++A  + +    + +
Sbjct: 237 CQVALGRRDRDLVHLMPQVFRPDMETWVVMHEDLRRVRRIRAVFDHLVEALQGY 290


>gi|307944793|ref|ZP_07660131.1| transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307772007|gb|EFO31230.1| transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 307

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 122/292 (41%), Gaps = 10/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F   AR GSFT AA++LHL+Q +IS+Q+  LE  +G++LF R  + + LT+ G  
Sbjct: 10  DTLIAFECAARHGSFTRAAKELHLTQGAISKQVRQLEDRLGVELFRRVRQRIVLTDAGRI 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      L +   ++   +      L +A     G   L   L  FL +YP   + 
Sbjct: 70  YLHDIRGAMESLTSATRQVMSYAGSED-VLNLAVLPTFGTRWLAPRLSGFLKVYPKAGLN 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +  +  D + +  D AI    P+ + + I   L    +   A+P +           +
Sbjct: 129 LSVRLQPFDFANESFDGAIHHGDPVWAGA-IAEPLFPEDVIPVASPVFRDRH-NISEPTD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +   +          + F+    V     +      +   ++ I +  +   G AL+P
Sbjct: 187 LTRVPRLQLATRPLAWRQWFD----VAGVQTDVAFQGARFEQFVMISEAAIHHLGAALMP 242

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + ++D      LV++ +  ++ +   +F YPE       +KAFR ++  +A
Sbjct: 243 SFFIRDELAAGRLVQLFDVSLSQATAYHFVYPENRTLRPVVKAFRTWLLDEA 294


>gi|296104333|ref|YP_003614479.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058792|gb|ADF63530.1| LysR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 306

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 124/296 (41%), Gaps = 12/296 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L+ F  VA + S   AAEQL+++ S++S QI+ LE+ +G KLF R  +G+ LT  G
Sbjct: 13  SLRNLQAFIAVANALSIHQAAEQLNVTPSAVSHQIASLESWMGKKLFIRSGKGVQLTPTG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            K  R  S     +     ++ +        LR+ ++   G + L   L +F   YPDI 
Sbjct: 73  EKYLREVSAAMSAIGRATDQIVKEKDNA--VLRVHSSPTFGLSWLLRRLGKFRAEYPDIT 130

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L    +++  + D  D  IR   P   +      +    +   A+P Y +      + 
Sbjct: 131 INLTCSYENLQFARDNIDIDIRHGIPDWDA-YRVMTIKNDTLVVLASPEYAQKH-PISTP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L + +LI+    +    + F W   +DRP        L  +      +   +G G  L
Sbjct: 189 TDLLQQSLISSTSTLVNWEKWFAW-HNIDRPWLN---FSLSFDRSYMSFEAARMGLGFIL 244

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRNFIFLKAR 295
               +  D   + +LV+++ D +  +    +   P   +   K++ F  +I  + R
Sbjct: 245 ESKMMATDHLKDGSLVQVLPDEMGIAINAHHLVMPHMHERAWKIQQFVEWIDRELR 300


>gi|15602432|ref|NP_245504.1| DNA-binding transcriptional activator GcvA [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|12720834|gb|AAK02651.1| GcvA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 293

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 124/295 (42%), Gaps = 13/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AAE+L ++Q++IS QI  LE  +GI LF R  R L LTE G 
Sbjct: 8   LNSLKAFESAARHLSFTKAAEELFVTQAAISHQIKLLEDFLGITLFKRKNRSLELTELGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++  +L     +L          L I+     G   L  +L EF   YP+I++
Sbjct: 68  AYFTDVNKILRRLVEATEKLLAQKNDKH--LTISVPQTFGMQWLVPHLSEFNQRYPEIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI   +     +L   KLV  ++   A+P  L       S +
Sbjct: 126 RLKGVDQDEGVLNKDIDIAIYYGQGNWD-NLQVEKLVEENLLILASPKLLA-HNPIHSKE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H LI             N+L   D  I +  +     +     +Q  + G G+ L 
Sbjct: 184 DLKHHTLIHI-HTRDNWQNMANFLQLEDLNIQQGPL----FSHTFMALQAAIHGQGLVLA 238

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              + +   D+ +L  ++   +    + Y      + N  +++AFR +I    + 
Sbjct: 239 NRLLAQQEIDHGHLQIVLPTNLHDPKSFYVVNHFDV-NDERIQAFRAWIIETMKQ 292


>gi|77465303|ref|YP_354806.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|221369311|ref|YP_002520407.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
 gi|332560909|ref|ZP_08415227.1| Transcriptional regulator, LysR family protein [Rhodobacter
           sphaeroides WS8N]
 gi|77389721|gb|ABA80905.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           2.4.1]
 gi|221162363|gb|ACM03334.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
 gi|332274707|gb|EGJ20023.1| Transcriptional regulator, LysR family protein [Rhodobacter
           sphaeroides WS8N]
          Length = 313

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 133/294 (45%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F WD L+ F  VARSG  + AA QL  S  ++SR+I  LE  + ++LF R+ RG  LT 
Sbjct: 3   NFTWDDLQFFLAVARSGQLSRAARQLRTSHVTVSRRIDRLEAALRMRLFERNPRGYELTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +  + E  Q+EL        G LR+A     G    +  L  F   +P+
Sbjct: 63  VGRRLIETAERMEAETERMQVELLGDGPGQRGVLRMAVPEGFGSWFSRVLLGPFTERFPN 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LI   + + +S   AD  + L  P ++S+    +++   +H YAA  YL    E  
Sbjct: 123 IALELITLPQIMSLSRREADLTVTL-DPPKASTYHSERIMDYTLHIYAAKSYLAQRPEIQ 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L KH  I + + +       ++L  V   I     +  + +S  + +     G G+
Sbjct: 182 TRDDLLKHPFIGYIEEMIFA-PGLDYLGEVHPGI----RANFKSSSIFNQLAATQNGLGL 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LP YI +  P+L  I+   +    T +      ++   + ++   F+    R
Sbjct: 237 CVLPFYIGRRVPDLEMILPQEVVLRRTYWLTCHRDVRPLPRERSVMAFLLEAGR 290


>gi|299066284|emb|CBJ37468.1| Transcriptional regulator, LysR family [Ralstonia solanacearum
           CMR15]
          Length = 322

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 125/277 (45%), Gaps = 6/277 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
             L ++ +++S+ ++ LE  +G++L  R  R L LTE+GS   R        L+T    +
Sbjct: 31  RVLGITSAAVSKNVASLEKALGVRLMNRTTRTLKLTEEGSAFLRQARVALEALDTAIDTV 90

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
               V PSG++RI+T+   G+  L   L   L  YP + +++  D++ +D+  D  D AI
Sbjct: 91  AAQRVVPSGRVRISTSWAFGREQLMPALPGLLSRYPALSVEVDFDDRIVDLVRDGYDLAI 150

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPK-CME 203
           R    I  S+L+ R +  +++   A+P YL     P + Q L  H LI    L  +    
Sbjct: 151 R-GGSIPDSALVSRPIFRLNLVLVASPDYLARHGVPQTPQALRSHRLIARRFLGGRVAPW 209

Query: 204 DFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIME 260
            F    +    +     + L +++  S++Q    G GIA +  ++  ++     L  ++ 
Sbjct: 210 SFRAEDSSITTLDPTDSAVLTLSAPESVVQAACDGVGIARVGVHLAWEHLLSGALKVVLH 269

Query: 261 DVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               P  + +   YP       +++A  +++     +
Sbjct: 270 RYHDPGHYEMVMQYPHRALMPPRVQATLDYLLEAFAE 306


>gi|148549059|ref|YP_001269161.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148513117|gb|ABQ79977.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 317

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 15/298 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    +  T  G+ 
Sbjct: 8   DQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDNLESAVGSRLFTRSTHAVRATPAGNA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL+ YP + +Q
Sbjct: 68  FAERARRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVQ 127

Query: 126 LILDNKDIDIS---MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+    +   D  +R   P+  + L+   L  +   A A+P YL +   P  
Sbjct: 128 LRLIDSFVDLQGSHLGEVDLVLRAG-PLADTRLVATPLAYMVRIACASPAYLASRGIPTC 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGSG 240
             EL  H+ + +  L P     F W  +V       R + ++   N+  +++   + G G
Sbjct: 187 PSELPGHDGLDWDGLAP----PFAWRFSVAGQTRLYRPARMRMAANNAETLLFGALAGLG 242

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKN--TGKLKAFRNFIFLK 293
           IA LP +++ +      L+ +  D   P       Y   L +    + +    F+  +
Sbjct: 243 IAHLPTWLISEYLLRGELIPLFCDGGMPEAETSGIYALRLAHETNSRSRLLLEFLKSR 300


>gi|228915028|ref|ZP_04078629.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844612|gb|EEM89662.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 300

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 132/295 (44%), Gaps = 16/295 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKN 176
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       + L  
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISTPLYESELIIVVPTGHQLAE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
               +SI EL  + LI    L+PK       + +  +         L++++  S++Q   
Sbjct: 181 HNH-VSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPKPILEISTMESLIQMVS 235

Query: 237 LGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F 
Sbjct: 236 KGMGITVLPKPYIDFLQSKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFI 288


>gi|37676797|ref|NP_937193.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37201341|dbj|BAC97163.1| transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 295

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +++ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWFQSVNSYIRVVEEGSFNAAARKMNTTSSAISKRIQWLEEKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  +  P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYQRAKLQLDGWQSVLDETRSVNQSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLILD--NKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I+IQL      +  ++S+   D  I R  + + S S     L       +AAP Y++   
Sbjct: 121 IKIQLFTTLPGQLPELSL---DLFISRELEQLNSLSFKATALFEHKATFFAAPSYIEKYG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P + ++L  HN++ +G+   + ++  N      R             +  ++      G
Sbjct: 178 MPENAEQLVNHNILIWGEKPSRELKLNNGKRMTLR-------GNFSTTNPEALFHGAKRG 230

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI L  + ++K+      LV ++ +V     TVY  YP+      + K F +++  + +
Sbjct: 231 MGILLSNNVMIKEELRTGALVPVLPNVHADEATVYAYYPKLDYQHTRTKLFLDYLKERLQ 290

Query: 296 D 296
            
Sbjct: 291 Q 291


>gi|332717082|ref|YP_004444548.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
 gi|325063767|gb|ADY67457.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3]
          Length = 308

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 127/296 (42%), Gaps = 14/296 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F  VAR GSF+ AA++L L+Q +ISRQ+  LE ++G++LF R ARG++LT +G   
Sbjct: 14  ALAAFDSVARLGSFSAAADELALTQGAISRQVMSLEEQLGVRLFERGARGVSLTTEGGAY 73

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSG-KLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                 +   L   +    +   K  G  L +A     G   L   + +F+  +P+I I 
Sbjct: 74  ---AKSIAAALGEIRAASLQIMTKTHGNTLNLAMLPTFGTRWLLPRIPDFVSSHPEITIN 130

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
                   D   +  D AI + +           L+   +    +P +LK        ++
Sbjct: 131 FATRIGQFDFEREQLDMAIHIGQA-DWPGAESTFLMHEMVAPVCSPEFLKAHPVEKG-ED 188

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +    L+       +     +W  ++   +  P+   ++   + S+ Q C+ G G+AL+P
Sbjct: 189 IAGLPLLHMAS---RPGAWSHWFESLGHSLALPQ--GMRFEQFSSVAQACIAGLGVALMP 243

Query: 246 DYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            +++ +      LV+  +       + Y   P +  N   +  FR+++  +   ++
Sbjct: 244 LFLIDNELKSRQLVKAYDHQAKSPSSYYAVAPLSRANHVPVVLFRDWLVRQVEAYR 299


>gi|307727164|ref|YP_003910377.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587689|gb|ADN61086.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 304

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 115/298 (38%), Gaps = 11/298 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTLTE 61
            + LR F  V R  S+  AAE+LH++ ++I + I GLE  + I+LF+R   G   L LT+
Sbjct: 7   LNALRAFEAVGRHLSYVAAAEELHVTPAAIGQMIRGLEETLDIELFHRSTSGPSRLLLTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
                       +  L      ++ S  +    + +     L        ++ F   YP 
Sbjct: 67  AARAAMPELQAGFELLAQAVERVKASKARI--TVTVTVPPALADKWFLHRVERFQRQYPR 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
             +++ L  + +D + D  D  IR         L    L+        +P  L+      
Sbjct: 125 YDLRIDLSLRLVDFTADRVDAGIRYGTG-HWPDLTATFLMRDEFFPVCSPALLEGEHPLR 183

Query: 182 SIQELDKHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  +L+ H LI    +   P      +W+              LQ+N   + +   + G+
Sbjct: 184 TPADLNHHPLIHDISMRAAPAFPTWRSWVQKTGNAGVVDCDRGLQINDSAAAIHTAISGN 243

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL    +V+ +     LVR   +  +     Y  + +   +   + AF+ ++  +A
Sbjct: 244 GVALGRTCLVERDIAEGRLVRPFPEAQSCDLAYYVVHRKDNGSEPAVVAFKEWLLAEA 301


>gi|229176285|ref|ZP_04303760.1| Transcriptional regulator, LysR [Bacillus cereus MM3]
 gi|228607192|gb|EEK64539.1| Transcriptional regulator, LysR [Bacillus cereus MM3]
          Length = 300

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 131/295 (44%), Gaps = 14/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F   YP
Sbjct: 62  DAGRILLLHSKTIFHEVEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNHSYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISIPLYKSELTLVVPTDHQLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPKPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F  
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFIE 289


>gi|167624804|ref|YP_001675098.1| LysR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354826|gb|ABZ77439.1| transcriptional regulator, LysR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 314

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 131/280 (46%), Gaps = 7/280 (2%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            VA  GSF+  AEQ ++ +S IS+QI+ LE E+G+ L  R  R L+LT  G ++      
Sbjct: 12  EVAELGSFSKVAEQRNVDRSVISKQINRLEHELGVHLLNRTTRSLSLTAVGHEMVSQAKS 71

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           +   L  +    Q    +P G LRI ++   G+  +Q  +  F   YPD+ I+L L+++ 
Sbjct: 72  LRTLLNDSHRLAQYYHSEPKGVLRITSSTLFGRQHVQQAVLVFQQQYPDVDIELRLEDRL 131

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           ID+  +  D   R+ KP + S+LI RK+    +   AAP ++K   E  ++++L+     
Sbjct: 132 IDMVGEGFDIGFRIGKP-KDSNLITRKIARNRLLIVAAPEFIKKHGEIKTLEQLEALPAA 190

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252
            +       ++ F++L   +           +VN    I Q  V G+ +A++   ++ + 
Sbjct: 191 VYA-APGLLIDKFSYLDANNETKQLQLNVVYKVNDVEMITQTAVAGNMLAVVAAQMIDNE 249

Query: 253 P---NLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRN 288
                L+ +M  +      T Y  YP       K K F N
Sbjct: 250 ILEQKLIPVMTQLHLNDLGTFYAVYPHRDA-PIKTKLFIN 288


>gi|78063497|ref|YP_373405.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971382|gb|ABB12761.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 310

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 120/292 (41%), Gaps = 15/292 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+KLF R  RGL LT  G+ 
Sbjct: 12  NALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGLKLFERLPRGLALTHDGAA 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                    H +     +L +        L I+TT       L   L +F   +PD  ++
Sbjct: 72  YFSDVQRALHAIADATDKLVKRRAA----LTISTTPSFASKWLIPRLAQFTDAHPDYDVR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +I D +      D  D AIR  KP     L    L  + + A  +P  L     P S + 
Sbjct: 128 VIADPQIATFRHDGVDLAIRYGKPPFGKHLATHALFPLDVCAVCSPALLAA---PASPRA 184

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H L+     +        +LA +  P+       L+ N     +   V G GIAL  
Sbjct: 185 LAGHVLLHDAHDL-----WPEFLAAMPEPVDLDPHKGLRFNQTSLAIDAAVAGQGIALAT 239

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           D +V+ +     L +  +     S   Y  YP   ++   +   R ++  + 
Sbjct: 240 DPLVERDIAAGRLCKPFDFAFPLSVGFYLVYPAERRDDDAIVVMREWMAAQV 291


>gi|332558400|ref|ZP_08412722.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332276112|gb|EGJ21427.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 297

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 130/293 (44%), Gaps = 8/293 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  VAR+ S + A   L L  +++ R+I+ LE  +G+ LF +  +G  LTE 
Sbjct: 1   MDWDDLRIFLGVARAESLSGAGRGLRLDPATVGRRIARLEEALGVPLFAKSPQGYALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L          +     +LQ +    SG++RI         LL   L +     P +
Sbjct: 61  GQRLLAHAERAEQAVGEAAEDLQGA-AGLSGQIRIGAPDGCANYLLPQVLAQICTDNPGL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q++   +  ++S   AD AI + +P ++  L  +KL    +H  A+  YL       +
Sbjct: 120 EVQIVALPRVFNLSKREADLAIGVSRP-EAGRLRVQKLADYRLHLAASAEYLSRHPPIRA 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H L+ +   IP  + D           G         NS    + +   G+G+ 
Sbjct: 179 LEDLKAHQLVGY---IPDMIFDKELDYLTGLGSGSVP---FASNSVSVQLNWLRAGAGVG 232

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++ D+ +   P LV+I+ + ++ S + +    +      +L  F + +    R
Sbjct: 233 IVHDFAMPSAPELVKILPESLSLSRSFWLIRHQDDVRLERLNRFTDALVQGVR 285


>gi|77163865|ref|YP_342390.1| LysR family transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|254436200|ref|ZP_05049707.1| LysR substrate binding domain protein [Nitrosococcus oceani AFC27]
 gi|76882179|gb|ABA56860.1| transcriptional regulator, LysR family [Nitrosococcus oceani ATCC
           19707]
 gi|207089311|gb|EDZ66583.1| LysR substrate binding domain protein [Nitrosococcus oceani AFC27]
          Length = 301

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 135/303 (44%), Gaps = 15/303 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M     +L VF  VAR  S+T AAE+LHLSQ ++S QI  LE  VG+ LF +  + + LT
Sbjct: 1   MHVTLRQLHVFEAVARHLSYTRAAEELHLSQPAVSMQIKQLEGNVGLALFEQLGKKIFLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L+  + ++  +L   +  L+E      G L IA         L   L  F   +P
Sbjct: 61  EAGRELYHYSQQISRELSEAEDVLEELKGSRRGTLTIAVASTATYFAL-HLLGRFHQRFP 119

Query: 121 DIQIQLILDNK---DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKN 176
           +  I L + N+      +  +  D AI + KP +   ++ +  +   +   A P + L  
Sbjct: 120 EANISLDVTNRKSLLRHLEENTIDMAI-MGKPPEGLEVVAKPFMENPLVVIAPPAHPLAG 178

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
            R PL++  L +   I         +    + A +   I     S ++++S  +I Q   
Sbjct: 179 QRVPLTV--LRQETFILREHGSGTRIAMERFFARLGATI----TSSMEISSNEAIKQAVQ 232

Query: 237 LGSGIALLPDYIVKDNPNLVR--IME-DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+ ++  + ++    L R  I+E D        Y  Y +  + T   KAF+  +F +
Sbjct: 233 AGFGLGIVSQHTLEKELALRRLVILEVDSFPIMRHWYIVYRKNKRATALHKAFKKLVFEE 292

Query: 294 ARD 296
           AR+
Sbjct: 293 ARE 295


>gi|257141497|ref|ZP_05589759.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 294

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 123/298 (41%), Gaps = 22/298 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA ++ ++Q ++++Q+  LE  +G++LF R  RGL LT  G 
Sbjct: 8   LNALRAFEVSARHLNFRAAAGEIGVTQGAVAQQVRHLEDTLGVRLFERLPRGLALTADGL 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +PD+ I
Sbjct: 68  AYFADVRRALNLIGDATDRLAKRRS----SVTISTTPSFASRWLIPRLASFGDEHPDVDI 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + +HA  +P  L         +
Sbjct: 124 RVIADSQFATFQGDGVDLAIRYGKPPFGKGLVARLLFPVDIHAVCSPALLAPSG--ARAR 181

Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L    L+    DL P+ +      A VD   G       + N     +   + G G+AL
Sbjct: 182 DLAGQVLLHDAHDLWPEFLAALPERAAVDPAKGP------RFNQSSLAIDAAIAGHGVAL 235

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT---GKLKAFRNFIFLKAR 295
             D +V  +     L R+ +  +  S   Y  YP   +      K +A   ++  +AR
Sbjct: 236 ASDQLVARDIEAGRLRRLFDFALPLSIGYYIVYPNEPRRPDDIAKTEA---WLIREAR 290


>gi|218681915|ref|ZP_03529592.1| LysR family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 264

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 115/253 (45%), Gaps = 5/253 (1%)

Query: 45  VGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLG 104
           +G +L  R  R L LT++G   +    ++   ++  +  +   S  P   LR++     G
Sbjct: 1   LGARLLNRTTRTLNLTDEGRVFYERGLQILASVDAAEASVAGRSGTPRSVLRLSVPDAFG 60

Query: 105 QNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIH 164
           + ++   L+E+L  + DIQ+++   ++  D+  +  D AIR+      + L  R + T  
Sbjct: 61  RLVVLPLLEEYLRAWLDIQVEISFTDRFADVVEEGFDLAIRIGPTASDARLASRVIATYR 120

Query: 165 MHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ 224
               A+P YL   REP  I +   H+ + F  +       + +    +  I     S L+
Sbjct: 121 TLLCASPSYLAEHREPRDIDDFSAHDCLIF--ISRNQRHAWRFRGKGNSWITAQGRSRLR 178

Query: 225 VNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTG 281
           ++S  +I    + G GIALLPD++V D+     L +++ D+ T    +   YP+      
Sbjct: 179 LDSAEAIRHAALAGLGIALLPDFLVADDLAAGRLRQVLPDLETDDTKIVTLYPDKRPLEP 238

Query: 282 KLKAFRNFIFLKA 294
           +++ F + +  + 
Sbjct: 239 RVRRFIDLVVEEL 251


>gi|119896868|ref|YP_932081.1| LysR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119669281|emb|CAL93194.1| probable transcriptional regulator, LysR family [Azoarcus sp. BH72]
          Length = 296

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 132/299 (44%), Gaps = 9/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + +W+    F  VA+SGSFT AAEQL L +SS+S  ++ LE ++G +L  R  R L LTE
Sbjct: 3   TINWNDWYAFATVAQSGSFTRAAEQLDLPKSSVSHAVARLERQLGQRLIERSTRRLALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG ++      ++ +L+    E  ++  +P G LRIAT  + G   L   + + L  +P 
Sbjct: 63  QGERMLAQVLPLFERLDAVAAEAGDARDEPQGVLRIATPYEFGAIQLGEVVNDVLNRHPR 122

Query: 122 IQIQLILDNKDIDISMDYADCA-IRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +QI++ +     + +    D       + +  S  + R++ ++    YAAP  ++    P
Sbjct: 123 LQIEIDVRILGAEPASGGYDVVFFATGEALPDSERVVRRVYSVARGLYAAPALVRRLGLP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL+    ++           +++ A   R         L+  +    +Q  + G G
Sbjct: 183 RSVAELEDWPCLSMPGEAR-----WHFEAADGRTHSVQPRGPLRTTNAALRLQAAIAGHG 237

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             +L     +   +   LV ++ D +     +Y   P       + + F + I    RD
Sbjct: 238 ATMLAASYCRRELEAGTLVPLLADHVPHPLKIYAHLPGRGLVPARARVFMDAIERFLRD 296


>gi|13473402|ref|NP_104969.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14024151|dbj|BAB50755.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 293

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 130/289 (44%), Gaps = 9/289 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    AA +L L+ +++SR+I+ LE  +  KLF R   G  LT  
Sbjct: 1   MNWDDVRIFLAVARAGQILGAARRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +   +   +  ++   +  +       SG +RI      G   L   L E   L+ ++
Sbjct: 61  GERFLDIAERMEGEMIAARSTISGEGDDISGTVRIGAPDGFGVAFLARRLGELTALHREL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P +   L+  KLV   +  +A+  Y      P +
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPTE-GRLVAGKLVDYSLGLFASRAYADANGLPKT 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL +H LI +  DLI     D+    + D        +   ++S L   +    G+GI
Sbjct: 180 AAELGRHPLIGYVPDLIVSPSLDYAAEFSADW------RTSFAISSALGQAEAVRSGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            +L  ++ +  P LV + + V       +  Y E+++   +++    FI
Sbjct: 234 GILHTFVARSMPELVAV-DAVAPIRRAYWLVYHESVRPLRRIQIVAGFI 281


>gi|148547936|ref|YP_001268038.1| LysR family transcriptional regulator [Pseudomonas putida F1]
 gi|148511994|gb|ABQ78854.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 296

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 118/296 (39%), Gaps = 11/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F   A  GSFT AA +  L     +  +  LE E+ ++LF R  R L LT +G 
Sbjct: 4   LDDLGIFVRSAALGSFTAAAREADLLPGQAAEAVKRLERELDVRLFARTTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L   +  L++ S + SG L++A   DLG+N+L   L  F   +P + +
Sbjct: 64  QYLPSALIALEALRHGRDNLRQESAQLSGTLQVAAPSDLGRNVLLPWLTAFRREHPQLNL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLSI 183
           +  L ++  D+  D  D AIR       ++ +   L   +     A+P YL       + 
Sbjct: 124 RFFLSDQIADLFRDPVDIAIRYGLN-ADANYVALPLAPWNRKVLVASPEYLAREGTVQAP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  + +        +      TV           L  +      ++ V G GI  
Sbjct: 183 EDLLEHQCLLYMQQGRIYDKWQLGTQTVQ------VRGALLCDDADIARRWAVGGEGITY 236

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V D+     LV +++D   P+  +    P   + +  ++    ++  +  +
Sbjct: 237 KSWLDVSDDVLAGRLVVLLQDYPGPTMPLSLVCPHRKQLSPAVRHLHAWLSSRFAE 292


>gi|315499337|ref|YP_004088141.1| transcriptional regulator, lysr family [Asticcacaulis excentricus
           CB 48]
 gi|315417349|gb|ADU13990.1| transcriptional regulator, LysR family [Asticcacaulis excentricus
           CB 48]
          Length = 320

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 125/299 (41%), Gaps = 13/299 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LRVF   AR  SF HAAE+L ++  ++S+QI  LE  VG++LF R  R + L++ G 
Sbjct: 9   LSALRVFEAAARHESFKHAAEELFVTPGAVSQQIRLLEEHVGVELFVRDGRRVVLSDAGK 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               +  E + K+      ++++     G++ ++         L   L +F    PDI +
Sbjct: 69  ASSIILKEAFEKMFEATRIMRQTQQ--KGRVTVSVAPSFAAKWLMPRLGDFSAANPDIDV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D    D ++   D AIR       + L    L+   +    +P  L          
Sbjct: 127 WVSADMAPTDFAVSDIDLAIRYGTG-NYNGLNVEHLLEEAVLPVCSPA-LYEAAPIRKPA 184

Query: 185 ELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H L+     DL P   +   WL        +      + N    +++  V G G+A
Sbjct: 185 DLTHHTLLHDVSSDLDPSDPDWAMWLKAHGAEEIDASRGP-RFNQSHMVIEAAVAGRGVA 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNT-GKLKAFRNFIFLKARD 296
           L    I + +     L  +  +   P SF  +  +P+  + +  +++ F +++  +ARD
Sbjct: 244 LAKRTIAEADLRAGRLRGLFNEKDAPVSFGYHLVWPQTREPSMAQVR-FMDWLRAQARD 301


>gi|195970031|ref|NP_437680.2| putative transcriptional regulator, lysR family protein
           [Sinorhizobium meliloti 1021]
 gi|307312331|ref|ZP_07591966.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|307319769|ref|ZP_07599193.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|186929516|emb|CAC49540.2| probable transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306894500|gb|EFN25262.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306899500|gb|EFN30131.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 299

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 125/300 (41%), Gaps = 15/300 (5%)

Query: 1   MSFD----WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG 56
           M        + LRVF   AR GSFT A  +L ++Q+++S QI  +E  VG  LF R  R 
Sbjct: 1   MKMSKQFPLNALRVFEAAARLGSFTKAGNELGMTQTAVSYQIKLIEESVGEPLFLRRPRQ 60

Query: 57  LTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
           + LTE G +L    +E +  ++      +  +      L I++T       L  ++  F 
Sbjct: 61  IALTEVGQRLAPKVTEAFELMQEAVASARGDAAS---TLLISSTATFASQWLARHIGTFQ 117

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
           L  P++ ++L  ++  ID S++  D AIR    +    L+  +L+ +      +P     
Sbjct: 118 LAQPNMAVRLSANDAMIDFSIEAVDVAIRSGLGVW-PGLVSHRLMKVEFTPMLSPALAST 176

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                  ++L K  +I   D           +   D     P  + L   S+ +     +
Sbjct: 177 IGGVNEPRDLLKLRIIDPQDRWWPLWFRAAGVRDADLDGRVP--TRLGAQSFEA--GAAI 232

Query: 237 LGSGIALLPDYIVKDNPNLVRIMEDVIT---PSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            G G+A+L      D+  L R+ +            +  YP A +N  K++ FR++I  +
Sbjct: 233 AGQGVAILTPQFYTDDVALGRLYQPFDLRGSDGHDYWLVYPHARRNVPKIRNFRDWILSE 292


>gi|170700952|ref|ZP_02891936.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134154|gb|EDT02498.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           IOP40-10]
          Length = 311

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 117/276 (42%), Gaps = 7/276 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L +S++++S++I+ LE   G+ L  R  R + LT+ G  L   T + +  +      +
Sbjct: 30  QRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTDAGQTLVDSTRDAFESIGQHFARV 89

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           ++ + +P G LR+   + LG+  +  +L +FL  +P + I+L L ++   ++ +  D AI
Sbjct: 90  KDLAGEPRGLLRVTAPVALGRQQVVPHLPDFLRQHPGVHIELDLSDRLHSLTQEGFDLAI 149

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R       +  +  KL        A+  YL     P    EL  H+ + +          
Sbjct: 150 RHTTTAPQTH-VAWKLCDTRSLLVASRDYLDARGAPGHPSELVDHSCLCYLRDNEPAAWS 208

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F       + +  P       N+  ++ +  + G GIALLPD+  + +     LV +++ 
Sbjct: 209 FEPDGRRRQRVSVPVRGSFAANNSEAMREAALGGLGIALLPDFSAQRDLDAGRLVALLDG 268

Query: 262 VITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
                     ++   P +      ++A    +  + 
Sbjct: 269 WRPSGAFGDHIFAIRPYSPVVPSAVRALVRHLRERL 304


>gi|317053386|ref|YP_004119153.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316953125|gb|ADU72597.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 299

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 122/293 (41%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LR F   AR  S T AA +LH++  +ISRQI  LE  +G+KLF R  R + LTE+G+
Sbjct: 8   LQTLRAFEAAARLSSMTLAAAELHVTHGAISRQIRKLEEHLGLKLFVRLTRQIILTEEGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + H   + +    E T+   +     P+  +RI+TT+      L   L +F   YPD  I
Sbjct: 68  QFHHAVTRI--LGELTRESERLRRRSPARYIRISTTVSFATKWLAPRLSQFRQRYPDFDI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL + + ++D++    D AIR         ++  +++   +    +P Y         IQ
Sbjct: 126 QLDVTDINVDLNDGQVDAAIRYGLG-HYRDVVSERILDETVTPVCSPGYRDTHNGLTIIQ 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL    L+    ++      F      +    +  +  L         +  + G G+AL 
Sbjct: 185 ELSGCVLLHEYRMLANWEAWFEMAGEKNFRCHQGPLWTL----GSMATEAAIRGEGVALG 240

Query: 245 PDYIVKDN---PNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              +V D+     LV       +         Y    +++ K++  R ++  +
Sbjct: 241 RSVLVADDVAAGRLVVPFPQYKLKAERGYDLVYRSDNQDSFKIRILRQWLCEE 293


>gi|218676085|ref|YP_002394904.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
 gi|218324353|emb|CAV25712.1| Transcriptional regulator, LysR family [Vibrio splendidus LGP32]
          Length = 298

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++++ LE  +G +L  R  R ++ TE
Sbjct: 1   MDWILNVKSYVKVVEEGSFNGAARKLNTTSSAISKRVNWLEERIGTQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    +     ++   E +  +  P+G L+I  TI +G   L   + +FL  YPD
Sbjct: 61  AGALFYLRAKDQLDNWQSIIDETRSVNQTPAGLLKIGATIAVGSKFLVQYMDDFLEKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I++QLI       +     D  I R  + + S S  +  L       YAAP YL     P
Sbjct: 121 IKVQLITT-TPGQLPELGLDLVISRELEQLNSLSFKKTPLFEHKASFYAAPSYLAKHGYP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ Q+L++HN + +G+   +         T+ +             +  ++      G G
Sbjct: 180 INEQDLEQHNSLIWGERPTR-------EVTLTKGQRITLNGNFATTNPEALFHAAKRGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + L    ++K++     LV ++ ++      VY  YP+   +  + K F + +  + 
Sbjct: 233 VLLTIKAMIKEDLKQGTLVPVLPNITADEVMVYAYYPKLDYSHTRTKLFLDHLKDRL 289


>gi|161519867|ref|YP_001583294.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353955|ref|YP_001949582.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160343917|gb|ABX17002.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337977|dbj|BAG47046.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 327

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 114/293 (38%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +  +GS + AA Q+H +Q ++SR++  LE  +G++L  R    + LT  G 
Sbjct: 29  FELMETFVRIVEAGSLSAAAAQMHTTQPTVSRRLQALERSLGVRLLQRTTHAMRLTVDGE 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +   ++       + +L+ +  +P G LR+A     GQ      L  FL  YP + +
Sbjct: 89  RCFKRAKDLLASWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVEPLARFLRDYPRVSV 148

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L +   D      DCAI++ +P     ++  +L  +     AAP  L     P    
Sbjct: 149 EWLLQDDVRDFVGSGIDCAIQVGEP-TDPGVVAIRLTNVPRFVAAAPSVLGGADVPRDPD 207

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     +         +   +  AT            +   +  ++    +LG G  + 
Sbjct: 208 ALAALPWLALSTYYRTELTLTH--ATTGDTRRIRIRPRMTTANLYALRSAALLGLGACVG 265

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +++  +     LV +  +       VY  YP A     +L  F   +    
Sbjct: 266 SSWMLAGDLARGELVHLAPEWHAAPLPVYLIYPHAQFYPSRLVRFAAMMREAV 318


>gi|260431311|ref|ZP_05785282.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415139|gb|EEX08398.1| transcriptional regulator, LysR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 286

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 114/293 (38%), Gaps = 19/293 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F  AA++L ++Q ++++Q+ GLE  +G  LF R  RGL LTE G 
Sbjct: 10  LNALRAFEASARHLNFRLAAQELGVTQGAVAQQVRGLEARLGTPLFDRLPRGLRLTEAGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + H      +  +E    +L         ++ ++ T       L   L +F   +PD+ +
Sbjct: 70  RFHAPLRRAFRLIEEAVEDLSGQR-----QITLSVTPSFASKWLVPRLGDFTARHPDVSV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           Q+    +  D   D  D A+R  +      L+   L         +P          S Q
Sbjct: 125 QVDARERLADFQTDGVDIAVRQGRAPFGDGLVAEPLFPTEFVVVGSPDLAAQV---TSAQ 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H +++    +        W   ++R   + R   +  +     +   V G G AL 
Sbjct: 182 DLLAHVMLSDSHGL--------WPLFLERAGVQGRPRMMNFSQTSLAIDAAVAGQGFALA 233

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              +V        LV+ +  V+      +   P   +    +   R+++  +A
Sbjct: 234 NAPLVAAELTAGRLVQPLAQVLLDDLGFHIVTPRKPRQPDLVALMRDWLRAQA 286


>gi|262402551|ref|ZP_06079112.1| transcriptional regulators LysR family [Vibrio sp. RC586]
 gi|262351333|gb|EEZ00466.1| transcriptional regulators LysR family [Vibrio sp. RC586]
          Length = 311

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 119/289 (41%), Gaps = 5/289 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + D LR+   V  + SF  AA+ L +SQ ++SR+I  LE ++  K+ +R  R L+LT Q
Sbjct: 1   MNLDLLRILIAVVDNKSFIAAAKALDISQPTLSRKIKSLEDDINFKIIHRGNRELSLTPQ 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G     V   +  +       + +      G ++I     + + +    +K FL   P I
Sbjct: 61  GENFIHVARNILQQWNEGLENINQQKNHIEGNIKIGLLHPMARWISDSFVKLFLEKNPRI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I+L+       + +D  D  I    P +  SL+  K++  +   YA+P YL     P +
Sbjct: 121 KIELVTKTPKQLLFIDDCDLLISPIMP-EDDSLVAIKILDFYFRCYASPEYLNKYGIPET 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
              LDKHN I      P   + + ++  +      P    +  +S          G GI 
Sbjct: 180 PTCLDKHNCIA-NINHPGNEKSWQYITPLGEEKTIPITGNITTDSIDIAKNLAKSGVGII 238

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LP++   D   N +L+ +         ++          T K+K F N
Sbjct: 239 QLPEFQALDFIENNDLIELFPHYHFKRGSMNIILRSREHITQKIKVFIN 287


>gi|317046594|ref|YP_004114242.1| LysR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316948211|gb|ADU67686.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 298

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 121/272 (44%), Gaps = 7/272 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +   + +F  V    SF+ AA  L +S+S +SR+I+ LE  +GIKL  R  R + LTE G
Sbjct: 6   NLTAMMLFARVVERQSFSEAARTLGVSKSYVSREIARLEVRLGIKLLQRTTRKVALTELG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +   + +  ++      +Q+    P+G +R+   +  G   +   L  F+  +  I 
Sbjct: 66  QAYYPFCTRLLDEMHRADAFVQQVHQLPTGNVRLQAPVTFGCQCVVPTLNRFIRRHIHIN 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L L ++  +    +AD AI +R     +    R+L TI    YAAP YL         
Sbjct: 126 VDLELTDRVSEDPACHADVAIVIRARAPETP-DYRELSTIDWGLYAAPDYLAAHPPIDHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H+L+ F          F       + +     S  + N+ ++++   + G+GIA 
Sbjct: 185 EKLTRHDLLLFHGPAHTAALPFR---RDKQRLALDVRSRFRANNSMALLNAALAGTGIAY 241

Query: 244 LPDYIVKDNP---NLVRIMEDVITPSFTVYFC 272
           LP Y+ ++      +V+++ +        Y  
Sbjct: 242 LPAYMTREALVREEIVQVLPEWQMDRLHSYLL 273


>gi|167032448|ref|YP_001667679.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166858936|gb|ABY97343.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 317

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 132/299 (44%), Gaps = 17/299 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    +  T  G+ 
Sbjct: 8   DQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDNLESAVGSRLFTRSTHAVRATPAGNA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL+ YP + +Q
Sbjct: 68  FAERARRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVQ 127

Query: 126 LILDNKDIDI---SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+    +   D  +R   P+  + L+   L  +   A A+P YL +   P  
Sbjct: 128 LRLIDSFVDLHGSHLGEVDLVLRAG-PLADTRLVATPLAYMVRIACASPAYLASRGIPTC 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGSG 240
             EL  H+ + +  L P     F W  +V       R + ++   N+  +++   + G G
Sbjct: 187 PSELPGHDGLDWDGLAP----PFAWRFSVAGQTRLYRPARMRMAANNAETLLFGALAGLG 242

Query: 241 IALLPDYIVKD---NPNLVRIMED---VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           IA LP +++ +      L+ +  +       S  +Y    E   N+ + +    F+  +
Sbjct: 243 IAHLPTWLISEYLLRGELIPLFCEGGLPEAESSGIYALRLEHETNS-RSRLLLEFLKSR 300


>gi|169632130|ref|YP_001705866.1| LysR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169150922|emb|CAO99529.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii]
          Length = 293

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 138/298 (46%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L+ F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLQFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L     ++    E   +++++      G++RI T    G   L   L EF + YP
Sbjct: 61  LEGMALVPRVEQM----EQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQYP 116

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL      
Sbjct: 117 LLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKVYGSQNYLAQNPPI 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H  + + D +    E +         +     +  + +S L+       G+G
Sbjct: 176 RRLEDLTQHRFVNYIDDLVYSPELY-----CLERLPLKLNANFRSSSILAQQIAVSAGAG 230

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +A+LP ++  D P L  ++E  +  + T +      L++  ++K   +++  +A  ++
Sbjct: 231 LAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWDYLRKQADKYQ 288


>gi|30262438|ref|NP_844815.1| LysR family transcriptional regulator [Bacillus anthracis str.
           Ames]
 gi|47527731|ref|YP_019080.1| LysR family transcriptional regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49185280|ref|YP_028532.1| LysR family transcriptional regulator [Bacillus anthracis str.
           Sterne]
 gi|165868290|ref|ZP_02212950.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0488]
 gi|167641359|ref|ZP_02399610.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0193]
 gi|170686946|ref|ZP_02878165.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0465]
 gi|170704698|ref|ZP_02895164.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0389]
 gi|177649258|ref|ZP_02932260.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0174]
 gi|190565334|ref|ZP_03018254.1| transcriptional regulator, LysR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227814751|ref|YP_002814760.1| transcriptional regulator, LysR family [Bacillus anthracis str. CDC
           684]
 gi|229604691|ref|YP_002866766.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0248]
 gi|254685016|ref|ZP_05148876.1| transcriptional regulator, LysR family protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254722422|ref|ZP_05184210.1| transcriptional regulator, LysR family protein [Bacillus anthracis
           str. A1055]
 gi|254751779|ref|ZP_05203816.1| transcriptional regulator, LysR family protein [Bacillus anthracis
           str. Vollum]
 gi|254760297|ref|ZP_05212321.1| transcriptional regulator, LysR family protein [Bacillus anthracis
           str. Australia 94]
 gi|30257069|gb|AAP26301.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           Ames]
 gi|47502879|gb|AAT31555.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49179207|gb|AAT54583.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           Sterne]
 gi|164715016|gb|EDR20533.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0488]
 gi|167510636|gb|EDR86031.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0193]
 gi|170130499|gb|EDS99360.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0389]
 gi|170668997|gb|EDT19741.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0465]
 gi|172084332|gb|EDT69390.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0174]
 gi|190563361|gb|EDV17326.1| transcriptional regulator, LysR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003114|gb|ACP12857.1| transcriptional regulator, LysR family [Bacillus anthracis str. CDC
           684]
 gi|229269099|gb|ACQ50736.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0248]
          Length = 300

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 132/295 (44%), Gaps = 16/295 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKN 176
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       + L  
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISAPLYESELIIVVPTGHQLAK 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
               +SI EL  + LI    L+PK       + +  +         L++++  S++Q   
Sbjct: 181 HNH-VSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPKPILEISTMESLIQMVS 235

Query: 237 LGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F 
Sbjct: 236 KGMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFI 288


>gi|332140936|ref|YP_004426674.1| DNA-binding transcriptional activator GcvA [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550958|gb|AEA97676.1| DNA-binding transcriptional activator GcvA [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 300

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 123/291 (42%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNALKAFEAAARHLSFTKAADELFVTQAAVSHQIKALEDFLSMKLFLRRNRTLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L+     L        G + +A         L   + +F L +PDI +
Sbjct: 68  AYFLELKDIFKNLQDATERLLAKGS--KGAITVAMPPSFASQWLVPRIHKFSLAHPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   K  + + L   +L    +    +P   +  +   S+ 
Sbjct: 126 RIKAVDFDEGFLEDDVDVAIYYGKG-RWAGLQADQLHKEFLTPLCSPLLFQGPKPLSSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   DL     +  NWL  V           +  +  + ++Q   LG GIAL 
Sbjct: 185 DLRHHVLLH--DLSRTAWK--NWLKHVGVVGVNVNQGPV-FSHSMLVLQAAALGQGIALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + +   +   LV   E+ +      Y    E+    GK+ AFR++I  
Sbjct: 240 NTVLARPEIEAGRLVMPFEERVESRDAFYLVCEESQAELGKIAAFRDWILA 290


>gi|313498971|gb|ADR60337.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 296

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 118/296 (39%), Gaps = 11/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F   A  GSFT AA +  L     +  +  LE E+ ++LF R  R L LT +G 
Sbjct: 4   LDDLGIFVRSAALGSFTAAAHEADLLPGQAAEAVKRLERELDVRLFARTTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L   +  L++ S + SG L++A   DLG+N+L   L  F   +P + +
Sbjct: 64  QYLPSALIALEALRHGRDNLRQESAQLSGTLQVAAPSDLGRNVLLPWLTAFRREHPQLNL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLSI 183
           +  L ++  D+  D  D AIR       ++ +   L   +     A+P YL       + 
Sbjct: 124 RFFLSDQIADLFRDPVDIAIRYGLN-ADANYVALPLAPWNRKVLVASPEYLARQGTVQAP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H  + +        +      TV           L  +      ++ V G GI  
Sbjct: 183 EDLLEHQCLLYMQQGRVYDKWQLGTQTVQ------VRGALLCDDADIARRWAVAGEGITY 236

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V D+     LV +++D   P+  +    P   + +  ++    ++  +  +
Sbjct: 237 KSWLDVSDDVLAGRLVVLLQDHPGPAMPLSLVCPHRKQLSPAVRQLHAWLTSRFAE 292


>gi|269963740|ref|ZP_06178059.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831533|gb|EEZ85673.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 320

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 135/293 (46%), Gaps = 10/293 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D   L +F      G F  A+ + H+S  ++SR ++ LE ++G KL +R+A+   LT  G
Sbjct: 18  DISNLYLFCQSVECGGFAAASLKAHVSAPTLSRAVASLEDKLGEKLVHRNAKQFQLTTAG 77

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + ++  + ++ +L     +L  S    +G++R++       N LQ    EF+ L+P++ 
Sbjct: 78  DEYYQRFAALFMQLNDEWTQLSNSQPVLTGEIRVSCPEPFADNFLQKMAIEFMQLHPEVS 137

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + +           +  D AI +  P  ++ LIQR+L    +   A+P Y++   +P   
Sbjct: 138 VTIQFSAGTERFFDEQIDLAI-VTTPPHANHLIQRQLFESPLMLAASPSYIEKYGQPERA 196

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +EL  H L++  +L       +  L    + I  P      ++S    +   + G+GI +
Sbjct: 197 EELMNHQLLSGNNL------PYWELKKDGKAIRIPYQPRYSISSLRLNIDATIAGAGICM 250

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +P    + +     LV ++ DV  P+   +  + +      ++ AFR+ IF +
Sbjct: 251 MPRAAFEKHAARKELVEVLSDVEYPTGKAFLVWADRKLIATRVVAFRDMIFER 303


>gi|206559807|ref|YP_002230571.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035848|emb|CAR51739.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 311

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 118/276 (42%), Gaps = 7/276 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L +S++++S++I+ LE   G+ L  R  R + LT+ G  L   T + +  +      +
Sbjct: 30  QRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTDAGQTLVDSTRDAFESIGQHFARV 89

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           ++ + +P G LR+   + LG+  +  +L +FL  +P +QI+L L ++   ++ +  D AI
Sbjct: 90  KDLAGEPRGLLRVTAPVALGRQQVVPHLPDFLRQHPGVQIELDLSDRLHSLTQEGFDLAI 149

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R       +  +  KL        A+  YL     P    EL  H+ + +          
Sbjct: 150 RHTTTAPQTH-VAWKLCDTRSLLVASRDYLDARGAPRHPSELVDHSCLCYLRDNEPAAWS 208

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F       + +  P       N+  ++ +  + G GIALLPD+  + +     LV +++ 
Sbjct: 209 FEPDGRRRQRVSVPVRGSFAANNSEAMREAALGGLGIALLPDFSARRDLDAGRLVALLDG 268

Query: 262 VITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
                     ++   P +      ++A    +  + 
Sbjct: 269 WRPSGAFGDHIFAIRPYSPVVPSAVRALVRHLRDRL 304


>gi|91781233|ref|YP_556440.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91693893|gb|ABE37090.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 308

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 119/271 (43%), Gaps = 6/271 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L L+ +++S+ ++ +E+  G+ L  R  R + LT +G         +  +L+     L
Sbjct: 27  RELGLTPAAVSKHLTQMESRAGVPLINRTTRRMMLTPEGDLYLEHARRILDELDELAGLL 86

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             +   P G LR+  T+  G++ +   +  F+  YP + +QL L      ++ D  D  I
Sbjct: 87  GTAKNSPKGLLRVNATLGFGRSHVAPAISRFVSKYPQVFVQLQLSVTPPPLTDDAFDVCI 146

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF--GDLIPKCM 202
           R  +P     ++ R+L        AAP Y+ +   P +  +L +H+ I    GD      
Sbjct: 147 RFGEP-PDRRVVARRLARNRRLLCAAPSYIASRGMPGTAHDLTRHSCIGIRQGDEAYGVW 205

Query: 203 EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIM 259
              +      +         L  N     +++ + G GI +  ++ +K    + +LVR++
Sbjct: 206 RLTSGRGASRKTETVRINGTLTTNDGEIAVKWALEGHGILMRAEWDIKQYLADGSLVRVL 265

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               TP+  ++  Y +  + + ++ AF +FI
Sbjct: 266 PGHDTPNADIFAMYSQRHQTSNRIHAFVDFI 296


>gi|104779941|ref|YP_606439.1| LysR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95108928|emb|CAK13624.1| putative transcriptional regulator, LysR family [Pseudomonas
           entomophila L48]
          Length = 316

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 125/292 (42%), Gaps = 7/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-ARGLTLT 60
           + +WD L+ F  VAR+   + AA++L +  +++SR+I  LE  +G  LF +    G  LT
Sbjct: 10  ALNWDDLKFFLEVARTRKASSAAKRLAVDYTTVSRRIGSLEGALGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  +P
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFVTPQLSHFVDAWP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL      
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLRLYATQDYLDRHEPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I +L +H  I++ D +    E       +           L+  S ++     + G G
Sbjct: 189 REIGDLMRHPFISYVDDLAFSSELLYLANLIPNANAH-----LRSTSVIAQYTAALQGRG 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +A+LP ++   +P LV ++ + I  +   +    E L+   ++    ++I  
Sbjct: 244 LAILPCFLAAQDPRLVTVLPEEIEVTRQFWMYCREDLRKLKRITLLWDYIRE 295


>gi|78061660|ref|YP_371568.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969545|gb|ABB10924.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 306

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 120/297 (40%), Gaps = 6/297 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             D + +RVF  V   GSF  AA  L +  S++SR ++ LE+ +G++L  R  R L +TE
Sbjct: 4   KLDLNAVRVFVSVVDEGSFAGAARVLSIPGSNVSRHVAQLESRLGVRLLERSTRHLRMTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  LH     +   L   + EL     +  G L++    ++G  +L   + EF   +P 
Sbjct: 64  AGRLLHERAKPMLDALTLAEFELTSQQTELRGVLKLCVPGEIGPRMLGPIIAEFASRHPR 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++I        +    D  D +I + R  +  S+ + R LV++     AAP  ++    P
Sbjct: 124 VEIDCDTSLAGVSTLRDDIDLSIIVNRGKLDDSAFVVRPLVSLTSVVVAAPSLIERTGMP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +   IT   L     + + +     R    P  S  +VNS        V G G
Sbjct: 184 TRTEQLRQLPCIT--TLSTLKGQPWQFADDDGRIHKIPVASRYRVNSGEMAGLAAVSGIG 241

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            A+L +           LVR+  ++      +   Y        K++     +  + 
Sbjct: 242 FAILVERGCAAELAAGRLVRVPLEMTPAPLELLGAYSSRNSVNAKIRELLQLMQARL 298


>gi|300312300|ref|YP_003776392.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075085|gb|ADJ64484.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 305

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 136/292 (46%), Gaps = 17/292 (5%)

Query: 1   MS-FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+   WD +R F  ++R GS + +A  L +  S+++R +  LE  + +KLF R ARG  L
Sbjct: 20  MNTLQWDDVRYFLTLSREGSLSASARVLKVEHSTVARHVGNLEKTLRVKLFDRLARGWVL 79

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G++L +   ++  ++ +        +   SGK+R++    L  + L   L  F   Y
Sbjct: 80  TTEGAELSKQAEQLEVEMHSLWRAALA-NTTLSGKVRVSAPPILMSDFLVPRLPAFQEKY 138

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           PDI++++I + + +D++   AD A+R+ +P+ S  L+ R L  +    Y  P +L+    
Sbjct: 139 PDIELEVIGEARGVDLTRGEADIALRMGEPV-SPLLVARMLCNVSYSVYGIPAWLERPES 197

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
             S         I      P       WL +      + R   L+ N   ++    + G 
Sbjct: 198 ERS--------FIGLDQESP--CRQKAWLESQ----VDQRRYALRTNDIRAMCHAAMSGI 243

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           G+ALLP ++V ++  LV I      P   +Y      ++   +++A  +F+ 
Sbjct: 244 GLALLPRFMVAEDTRLVAIPMPETPPPCPLYLVMHSDVRRAPRIRATADFLI 295


>gi|161525054|ref|YP_001580066.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350203|ref|YP_001945831.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160342483|gb|ABX15569.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189334225|dbj|BAG43295.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 311

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 117/276 (42%), Gaps = 7/276 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L +S++++S++I+ LE   G+ L  R  R + LT+ G  L   T + +  +      +
Sbjct: 30  QRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTDAGQTLVDSTRDAFESIGQHFARV 89

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E + +P G +R+   + LG+  +  +L +FL  +P + ++L L ++   ++ +  D AI
Sbjct: 90  KELAGEPRGLVRVTAPVALGRQQIVPHLPDFLRAHPGVHLELDLSDRLHSLTQEGFDLAI 149

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R       +  +  KL        A+  YL     P   +EL  H+ + +          
Sbjct: 150 RHTTTAPQTH-VAWKLCETRSLLVASRDYLDARGAPRHPRELVDHSCLCYLRDNEPAAWS 208

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F         +  P       N+  ++ +  + G GIALLPD+  + +     LV +++ 
Sbjct: 209 FELQGRRRERVSVPVRGSFAANNSEAMREAALGGLGIALLPDFSARRDLDAGRLVSLLDA 268

Query: 262 VITPSF---TVYFCYPEALKNTGKLKAFRNFIFLKA 294
                     ++   P +      ++A    +  + 
Sbjct: 269 WRPSGAFGDHIFAIRPYSAVVPSAVRALVRHLRERL 304


>gi|307544078|ref|YP_003896557.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307216102|emb|CBV41372.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 289

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 140/289 (48%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R F  V R+G+   AA++L L Q+++ R+++GLE  +G +LF R   GLTLT+ 
Sbjct: 1   MNWDDVRFFLAVYRAGTLRGAAQRLALDQTTVGRRLTGLERTLGSRLFLRTKGGLTLTDS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      +     + +   + +  + +G++R+ TT  L  + +   ++     +PDI
Sbjct: 61  GRQVLPTAENMERLAVSFERLSEGADERVAGEVRVTTTDALAVDFVVPAIERLRTTHPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    + +D++   AD A+R  +P +   LI R+L    +  YA   YL+   EP  
Sbjct: 121 RVILSTTTRLLDLARREADVAVRTLRP-EQPDLIVRQLGRWEVGLYATQGYLERHGEPHP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            +    H++  + + +    +D         P G+ R+   +++S L +  +   G  + 
Sbjct: 180 DEGFAGHDIALYQEGVTGRQDD----TLAGVPRGQGRVVA-ELDSSLMLATFVRAGLALG 234

Query: 243 LLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LPDY+ + +  LVR+  D      +  +    + L +T +++     I
Sbjct: 235 ELPDYLAQRDRRLVRVWPDRHRATPYEAWLVLHQDLAHTARVRVVVEAI 283


>gi|332534019|ref|ZP_08409870.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036568|gb|EGI73035.1| transcriptional regulator, LysR family protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 311

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 126/290 (43%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            + + L++   VA   S T AA +L +  ++ S  I  +E  +G +LF R  R L L+  
Sbjct: 1   MNIEDLKLILKVAEFRSITLAAAKLDMRTATASAAIKRVEAALGSELFVRTTRHLRLSAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +      +    LE  +  L+    +  G+LR+A + DLG+NL+   + E +  YP +
Sbjct: 61  GERYIPQCEQALAVLELAKQNLKGEHDEIEGELRVALSSDLGRNLVIPWIDELMDTYPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++  + + +ID   D  D A+R   P   +S+   K+  +     A   YL     P+ 
Sbjct: 121 SLRTHISDSNIDFYRDSVDIALRYGSP-NDASVYGFKICNVPRLLCATDEYLLQNGAPMH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGI 241
             +L  H  + +     + + +  W  T      + ++   +  N    + ++CV G G+
Sbjct: 180 PDDLASHQGLFYQL---QDIINNTWEFTDGESKYKVKMDGRRASNDGDLVRRWCVAGKGL 236

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           A+     + D+     +V +M++    +  ++   P     T  ++  R+
Sbjct: 237 AVKSALDMADDLLNDRVVTVMQNYQHVNGELWLICPSRQSITPAVRLLRD 286


>gi|172060088|ref|YP_001807740.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171992605|gb|ACB63524.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 305

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 123/297 (41%), Gaps = 6/297 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L+  +S +SR+I+ LE  +G++L +R  R  T+T+ G
Sbjct: 7   DLNDLYYFVQVVEHGGFAPAGRALNQPKSKLSRRIALLEARLGMRLIHRSTRRFTVTDVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +     +P G +R++  + L  +L+   +  F++  P ++
Sbjct: 67  QTYYAHCRAMLVEADAADEAIALLHEEPRGIVRVSCPVVLLDSLVGTMIAAFMVACPRVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D AIR+R  P++ S L  R L        A+P  L+    P  
Sbjct: 127 IHLEATNRRVDVVGEGIDVAIRVRPPPLEDSDLALRVLAERGQCLVASPALLRELGTPAV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +    +    +P+    +                 L     L++    V G G+ 
Sbjct: 187 PADLTRLP--SLDHGVPQAAHVWRLRGPDGAQAEIHHQPRLVTGGMLALRAAAVAGVGVV 244

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            LP  +V+D     +LV ++ +       V+  +         +++  +F+  +  +
Sbjct: 245 QLPTMMVRDEVARGDLVTVLPNWAPRREIVHAVFASRRGLLPAVRSLLDFLTERFAE 301


>gi|90412626|ref|ZP_01220628.1| transcriptional regulators, LysR family protein [Photobacterium
           profundum 3TCK]
 gi|90326434|gb|EAS42846.1| transcriptional regulators, LysR family protein [Photobacterium
           profundum 3TCK]
          Length = 316

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/280 (25%), Positives = 134/280 (47%), Gaps = 7/280 (2%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            V   GSFT+ +EQ ++ +S IS+ IS LE E+G++L  R  R L+LT  G+++      
Sbjct: 12  EVIELGSFTNVSEQRNVDRSVISKHISRLEGELGVRLLNRTTRSLSLTAAGNEIVNQAKL 71

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
           + + L  T    Q    +P G LRI ++   G+  +Q  +  F   YP++ ++L L+++ 
Sbjct: 72  LRNLLNDTHRLAQNYHSEPKGILRITSSAMFGRQYVQQAVLAFQQQYPEVDVELRLEDRF 131

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           +D+  +  D   R+ KP ++SSLI RK+    +   A+P +++   E  +I++L+     
Sbjct: 132 MDMVSEGFDIGFRIGKP-KNSSLIIRKVARNRLLIVASPEFIEKHGEIKTIEQLEALPAA 190

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD- 251
            +       ++ F +  +             +VN    I +  V G+ +A++   ++++ 
Sbjct: 191 VYA-APGLLIDKFTYFDSNKESKKLQLNVAYKVNDVEMITKTAVAGNMLAVVTAQMIENE 249

Query: 252 --NPNLVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRN 288
                L+ IM  +    F T Y  YP       K K F +
Sbjct: 250 ILEGKLIPIMTQLHLDDFGTFYAVYPHRDA-PIKTKLFID 288


>gi|82701820|ref|YP_411386.1| LysR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82409885|gb|ABB73994.1| transcriptional regulator, LysR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 311

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 133/302 (44%), Gaps = 14/302 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +     +L+VF  VAR  SF+ AAE+LHL+Q ++S QI  LE  V + LF +  + + LT
Sbjct: 2   LHITLRQLKVFESVARHLSFSRAAEELHLTQPAVSMQIKQLEDTVELPLFEQMGKKIYLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G +L+  +  +  +L   ++ L E      G+L I+             L +F   YP
Sbjct: 62  DAGRELYHYSRAISQQLSDMELALDELKGLERGRLNISVVSTAN-YFAPHLLAKFCQRYP 120

Query: 121 DIQIQLILDNKDI---DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           DI + L + N++     +S +  D AI + +P +   +     +   +   AAP +    
Sbjct: 121 DITVSLNVSNRETVLKQLSDNVIDLAI-MGQPPEDLDIAAESFMENPLVVIAAPDHPLCR 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            E + ++ L++   +              + A+    + +     ++ ++  +I Q    
Sbjct: 180 MERIPVKRLEQETFLVREPGSGTRGAMERFFASHHISLSK----GMETDTSEAIKQAVQA 235

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVY-FCYPEALKNTGKLKAFRNFIFLK 293
           G G+ +   + V+   +   L +I++    P    +   + +  + +   +AF+ F+  +
Sbjct: 236 GMGLGITSLHTVELELETKRL-KILDVEDFPIMRYWHIVHRKHKRLSSVAQAFKEFLLKE 294

Query: 294 AR 295
           AR
Sbjct: 295 AR 296


>gi|254254705|ref|ZP_04948022.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
 gi|124899350|gb|EAY71193.1| Transcriptional regulatory protein LysR family [Burkholderia dolosa
           AUO158]
          Length = 333

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 6/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT  G 
Sbjct: 35  FELMETFVRIVEAGSLSAAAAQLHTTQPTISRRLQALERSLGMRLLQRTTHAMRLTVDGE 94

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      E+       + +L+ +  +P G LR+A     GQ      L +FL  YP + +
Sbjct: 95  RCFTRAKELLAHWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVAPLAQFLRDYPRVSV 154

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L +   D      DCAI++ +P     ++  +L  +     AAP  L     P    
Sbjct: 155 EWLLQDDVRDFVGSGIDCAIQVGEP-TDPGVVAIRLTKVPRFVVAAPSVLNGADVPADPD 213

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     +         +   + +    R I       +   +  ++    +LG G  + 
Sbjct: 214 ALAALPWLALRTYYRTELTLTHAVTGDTRRIAI--RPRITTANLYALRSAALLGVGACVG 271

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             +++ D+     LV +  D       VY  YP A     +L  F   +
Sbjct: 272 SSWMLADHLARGELVHLAPDWQAAPLPVYITYPHAQFYPSRLVRFVAMM 320


>gi|259416140|ref|ZP_05740060.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
 gi|259347579|gb|EEW59356.1| transcriptional regulator, LysR family [Silicibacter sp. TrichCH4B]
          Length = 293

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 128/300 (42%), Gaps = 18/300 (6%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               + LR F V AR GSFT AA +L ++Q+++S QI+ LE  + + LF+R   GL +T+
Sbjct: 6   DIPLNALRTFEVAARQGSFTRAAIELRVTQAAVSHQIARLEDVLRVTLFHRTPAGLVMTD 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L  V        +  ++  + +   P+  L I          L   L+ F   +P 
Sbjct: 66  AGQALFPVMERGLD--DIARVLDRVAGGPPTEILNIGAVTTFAVGWLIPRLQAFDRAHPG 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L   N  ++I+ +  D AIR     Q   +    ++   M    +P+      +  
Sbjct: 124 ITLRLSTHNNRVEIAREGLDAAIRFGDG-QWPGVEAYHIMDAPMAPLCSPNL-----DIQ 177

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  ++ KH L+       +  E   W A V      P ++   ++S L +      G GI
Sbjct: 178 TPADMRKHTLL----RSYRADEWSAWFAQVGEAC--PSLTGPVLDSSLGLADVAAEGFGI 231

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           ALLP  + + +     LVR     +T   + +   P+  + T   K   +++  +A D +
Sbjct: 232 ALLPVSMFQHHLFSGRLVRPFATTVTLG-SYWLTVPKDRRITSAAKMLLDWMRNEAGDHQ 290


>gi|311105738|ref|YP_003978591.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760427|gb|ADP15876.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           71 [Achromobacter xylosoxidans A8]
          Length = 304

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 15/298 (5%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S     LRVF   AR GSF  AA++L ++ +++S QI  LE + G+ LF RH R ++LTE
Sbjct: 7   SLPLSGLRVFEAAARLGSFKAAAQELAVTPTAVSHQIRALEAQTGLALFDRHVRKVSLTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G++L+ V  + +   E T   L +   +   ++ I+ T       L   + +F   +P 
Sbjct: 67  TGAQLYPVLRDGFDAFEATLARLTQQRART--QVTISATNAFTVKWLVPRMADFRSRHPG 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +QL   +  +D+     D AIR  +      L+ + L T      A P          
Sbjct: 125 IDLQLQASDDVVDLRSAAVDIAIRYGRG-PYPGLVAQPLFTDRFAPVANP----RLGVSS 179

Query: 182 SIQELDKHNLITFGDLI--PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           +  +L +  LI F      P       W     R +   +   L+ +     +Q  V G 
Sbjct: 180 T-DDLARVPLIRFNWKWSHPDNPTWERWFDVAQRSLPR-QAGQLRFSDEGHAIQAAVAGH 237

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           G+AL+   ++ +     +LV+    VI    T +         +  ++A   ++  +A
Sbjct: 238 GVALVSLPLIAEELEAGHLVQPFGPVIA-GHTYHLAMLADRPPSAPVQAVAQWLSAQA 294


>gi|71734912|ref|YP_276123.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555465|gb|AAZ34676.1| probable transcriptional regulator, LysR family [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320327185|gb|EFW83199.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330880809|gb|EGH14958.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 328

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 130/289 (44%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  SGSF+ A   L LS S++SRQI  LE  + + L  R  R L +TE G  + 
Sbjct: 14  MLVFRQVVVSGSFSGAGRTLGLSPSAVSRQIDRLERILNVALVTRSTRNLFITESGQDVF 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V SE+    ++    ++ + V+P G LR+   + +G+ LL  ++ EFL +YP I++ L 
Sbjct: 74  NVASEIASATDSLMGRIEAAMVEPEGLLRVTAPVTIGKILLSSSIAEFLRVYPKIKVDLN 133

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +DI  +  D ++R+        ++ RKL  +     A    + +   P   +++ 
Sbjct: 134 FTDNIVDIYKEKFDLSVRITSTPPHD-MVARKLFDVEYLLVATTGEV-SFEIPSHPEDIS 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              +IT  D        FN     D          L  N+  +++     G+G+ +LP++
Sbjct: 192 STPMITPSDSFFGEEMTFN---HTDYSYTVRSTPRLMANNSETLLGAIFSGTGVGVLPNF 248

Query: 248 IV---KDNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     ++  L  I+ +         +V+     +   + K +A+  ++
Sbjct: 249 LAIPLIESGQLRSILPEWQINNVTPSSVFLLSHPSKMISAKARAYIEYL 297


>gi|264679897|ref|YP_003279806.1| LysR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210412|gb|ACY34510.1| transcriptional regulator, LysR family [Comamonas testosteroni
           CNB-2]
          Length = 317

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 132/299 (44%), Gaps = 10/299 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D   L +   +  SG+ + AA +L ++++++S  ++ LE   G++L  R  R +  TE
Sbjct: 12  AMDSQSLTLLVEIIDSGNLSQAARKLKMTRANVSYHLTQLEKAAGVQLVKRTTRRVEPTE 71

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L+     +++++   +  +        G++ I+     GQ ++   L EF  LYP 
Sbjct: 72  IGMRLYEHGRNIHNEMLAAREAITALGQSLQGRVGISVPSGYGQIVMSEWLIEFKRLYPG 131

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++ +N+  ++  D  D  +R+ +     SL+ R L T+   A A+  Y +    P 
Sbjct: 132 IVLDVLFENRADNL-RDDVDIIVRVIQE-PPLSLVARSLGTVRYLACASREYAQTHGLPR 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++  L    LIT G    +        +     + EP    +    +  +    + G G+
Sbjct: 190 TLHALRASPLITAGVTGRQLRLAAYLGSERHEVMLEP---TMISEHFPFLRDGILAGLGV 246

Query: 242 ALLPDYIVKDNPNLVRI---MEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
            L+PDY+V+D      +   +++     F   +Y  Y      T  ++   +F+  KA+
Sbjct: 247 GLVPDYVVQDKLATGEVLSTLDEYRLSIFGTHMYLLYLPNRHQTKAVRTCIDFLLAKAQ 305


>gi|317053911|ref|YP_004117936.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316951906|gb|ADU71380.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 293

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 119/292 (40%), Gaps = 12/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF VV R  +F  AAE+L ++Q ++++QI GLE  +G+KLF RH R L LT  G 
Sbjct: 11  LNALRVFEVVTRHLNFRLAAEELEVTQGAVAQQIRGLEASLGLKLFERHPRSLALTGAGR 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +   + +  ++     L+         L ++ T       +   L  F   +PDI +
Sbjct: 71  GYAQSIRQAFELIDEATRTLRPEPHH----LTLSVTPTFASRWMLPRLPAFTAAWPDIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++   + +    +  D A+R  +P   + +    L      A  +P  L    +P   +
Sbjct: 127 RVLAAERLVQFHQEGVDLAVRYGRPPFGTGVEATLLFRYSAMAVVSPELLAQLGDPTQPE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
                N + +  L         +LA     +       L+ N     ++  + G GIAL 
Sbjct: 187 -----NCLRYVLLHDGHHLWPAFLAQQFPTMTLNHQHHLRFNQTALALEAAISGQGIALT 241

Query: 245 -PDYIVKD--NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P +I  D  N  LV+     +      Y   P   +    + A R+++  +
Sbjct: 242 SPHFIANDLANGRLVQDFAQTLEVDAGWYLVAPSRPRQHAPISAVRDWLLAQ 293


>gi|229103023|ref|ZP_04233712.1| Transcriptional regulator, LysR [Bacillus cereus Rock3-28]
 gi|228680438|gb|EEL34626.1| Transcriptional regulator, LysR [Bacillus cereus Rock3-28]
          Length = 305

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 14/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   L  F  LYP
Sbjct: 67  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQYGSLTIGSLLTVVNYLLPPTLLHFNNLYP 126

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L        +  +  D  I    P+Q   ++   L    +       +  + 
Sbjct: 127 NIELSVLGLRTGEIREKLLQNELDIGITF-LPVQDKEIVSIPLYKSELTLVIPIGHPLSE 185

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            + +SI+EL  + LI    L+PK       L T  +         L++++  S++Q    
Sbjct: 186 FDHVSIKELQNYPLI----LLPKNFYLTELLTTYCQNFSFKPKPILEISTMESLIQMVSK 241

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G GI +LP    D++  +N   ++I  +  TP+  +   Y +        + F  
Sbjct: 242 GMGITVLPKPYIDFLQNENIQAIKI--EDPTPTIDIGLIYRKDKYMCAATREFIE 294


>gi|163854697|ref|YP_001628996.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258425|emb|CAP40724.1| transcriptional regulator, LysR-family [Bordetella petrii]
          Length = 313

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 128/303 (42%), Gaps = 12/303 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + +R+F  +  S + + AA++  +++S++S ++  LE  +G +L  R  R + LT+ G
Sbjct: 7   DLNLVRLFVAMVESRNLSAAAQRCGMTRSNMSHRLKRLELALGAQLLRRTTRHVELTQAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L++    +  ++   Q  +        G +R+     LG   L   L EF   YPDI 
Sbjct: 67  RLLYQHGVRLLDEMRAAQSNIDSLGGTVRGDVRVRLPTGLGHLYLAPVLLEFTRRYPDIA 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++ +++   D+     D A+++         + R+L  I     AAP +L + R   ++
Sbjct: 127 LRVHINDNIGDLVSAEVDLALKITSAPPEDH-VARRLCAIQWSLCAAPEFLLDGRPVQTL 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L + ++I    L  +   D         P+       LQ   Y  + +  + G G+AL
Sbjct: 186 EQLGRCSMIAPQSLGRRF--DLRLKHAHGDPLILRVAPRLQSGDYPFLREAVLAGLGVAL 243

Query: 244 LPDYIV---KDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFL----KA 294
           LP Y V     +  L  ++ +         +Y         +   +A   F+      + 
Sbjct: 244 LPRYAVWTQLRDGQLREVLPEFEPEGVGNAIYLLTAPNRFPSMATRALAGFVQEHIERRH 303

Query: 295 RDW 297
           RDW
Sbjct: 304 RDW 306


>gi|26988591|ref|NP_744016.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24983365|gb|AAN67480.1|AE016374_12 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 317

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 15/298 (5%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D+L +F  V  +GSF+ AA +  L+ S+++R+I  LE+ VG +LF R    +  T  G+ 
Sbjct: 8   DQLSLFLDVLETGSFSAAARRHPLTPSAVARRIDNLESAVGSRLFTRSTHAVRATPAGNA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FL+ YP + +Q
Sbjct: 68  FAERARRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLVAYPGLDVQ 127

Query: 126 LILDNKDIDIS---MDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+    +   D  +R   P+  + L+   L  +   A A+P YL +   P  
Sbjct: 128 LRLIDSFVDLQGSHLGEVDLVLRAG-PLADTRLVATPLAYMVRIACASPAYLASRGIPTC 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ--VNSYLSIMQYCVLGSG 240
             EL  H+ + +  L P     F W  +V       R + ++   N+  +++   + G G
Sbjct: 187 PSELPGHDGLDWDGLAP----PFAWRFSVAGQTRLYRPARMRMAANNAETLLFGALAGLG 242

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKN--TGKLKAFRNFIFLK 293
           IA LP +++ +      L+ +  D   P       Y   L +    + +    F+  +
Sbjct: 243 IAHLPTWLISEYLLRGELIPLFCDGGLPEAETSGIYALRLAHETNSRSRLLLEFLKSR 300


>gi|206562427|ref|YP_002233190.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198038467|emb|CAR54425.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 309

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 129/299 (43%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F  V  SGSF  AA +L +++S++++ ++ LE  +G +L  R  R L LT
Sbjct: 1   MDERLRGVAEFVDVVESGSFAAAALRLGMTRSAVAKIVARLELRLGARLLQRTTRQLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +     +  +L  T+  L     +P+G++RI+  +  G+  +   ++  +  +P
Sbjct: 61  DEGFVYYEQCRRLLAELGETEAALDAGRREPAGRVRISVPVLFGRQCVAPVVRRLVERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I +   ++  D+  D  D A+R+ +   +S+L+ RKL    M   A+P YL     P
Sbjct: 121 RLEIDMSFSDRVADLVNDGFDLAVRIGELADTSALVGRKLGVQRMGICASPDYLARHGRP 180

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             ++ L  H  I +   G   P  +   +      R  G  R   LQ  +  +     + 
Sbjct: 181 SGLEALASHVGIAYSRGGQPTPWRIIGADGAVHDHRAAGRLRFDDLQAIADAAAAGAGLA 240

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 LP +++     +  L  +M+        V+   P A     K++   + +  +
Sbjct: 241 -----WLPCWLMAPYVRDGRLALVMDSDSVSGAEVFAVRPAARHVPSKVRVVVDALVDE 294


>gi|242312247|ref|ZP_04811264.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254264608|ref|ZP_04955473.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|242135486|gb|EES21889.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|254215610|gb|EET04995.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 309

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+ LF R  RGL LT  G 
Sbjct: 17  LNALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDALGVALFERLPRGLALTADGL 76

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +P + +
Sbjct: 77  AYFADVRRALNLIGDATDRLAKRRAN----VTISTTPSFASRWLIPRLASFGDEHPGVDL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + ++A  +P  L         +
Sbjct: 133 RVIADSQFATFQGDGVDLAIRYGKPPFGKGLVTRLLFPVDIYAVCSPALLATPGVLARAR 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+     +        +LA +   +        + N     +   + G G+AL 
Sbjct: 193 DLAGHALLHDAHDL-----WPEFLAALPERVAIDPAKGPRFNQSSLAIDAAIAGHGVALA 247

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V  +     L R+ +  +  S   Y   P   +  G +     ++  +A+
Sbjct: 248 SDQLVARDIEAGRLRRLFDFALPLSVGYYIVRPSEPRRPGDIAQTEAWLIRQAQ 301


>gi|83945226|ref|ZP_00957575.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851396|gb|EAP89252.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 329

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 136/292 (46%), Gaps = 11/292 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDWD LR+F+ +  SGS + AA +L + Q ++SR++  LET +G +L  R A G+ LT  
Sbjct: 8   FDWDDLRIFHALVSSGSMSSAARKLGIGQPTVSRRLEQLETRIGARLVTRGAEGVELTAI 67

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++      +       +    ++    +G + +A    +    +   L  F+   P I
Sbjct: 68  GERIWAQVQIMQSTAGDIERIAHQADRADAGTVHLAAPEGVAGYWIARQLPSFVEANPAI 127

Query: 123 QIQLILDNKDID--ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++   N  +D  +++D +D  +++ +  + S  +  +L T+H   +AA  YL     P
Sbjct: 128 NLEI---NTRVDGELALDQSDICLQMTESKRMSH-VATELGTLHYVPFAARAYLDTYGAP 183

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ ++  H +    DL+    +  +W       I +     L  ++ L++++    G+ 
Sbjct: 184 KSVADVLNHRI---ADLVSYSAQQTHWPKEAS-AIKQMMNPSLTTDNSLALVEAVRAGTA 239

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           I+++P Y  K  P LV +   +  P  T++  Y    +   +++   +++  
Sbjct: 240 ISMIPTYAAKVQPELVHVDLGLEVP-ITLWMVYHPDQRRVTRVRKVLDWLRE 290


>gi|107021901|ref|YP_620228.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116688849|ref|YP_834472.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|254246195|ref|ZP_04939516.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|105892090|gb|ABF75255.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
 gi|116646938|gb|ABK07579.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|124870971|gb|EAY62687.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 327

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 118/291 (40%), Gaps = 8/291 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA   SF  AA  L +S + ++R I+ LE  +  +L +R  R L+LTE G +  
Sbjct: 7   MRVFVCVAEQQSFRRAAHHLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTEAGVRYL 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  + +  +  +  +  +P+G LR+  +  L    L   +  F   YP++++QL 
Sbjct: 67  DGCRALLEEFDHLESSVAHAVREPAGTLRVVASGLLSPLALTPLVSSFRHRYPELRVQLT 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +    +D+     D  I     +  + +LI   L      A AAP YL    EP    +L
Sbjct: 127 VAEGPLDVLDSGYDVGIVTGTRLDGNPTLIGHALAPNPFVACAAPAYLDRRGEPRVPDDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+ +T      +    +  +                VN    +    V G+GIA+LP+
Sbjct: 187 PGHDWVTLAP--HQHAPTWQLVGHDGVAHSVTVRPACTVNQLALVQAAAVAGAGIAVLPE 244

Query: 247 YIVKD---NPNLVRIMEDVIT--PSFTVYFCYPEALKNTGKLKAFRNFIFL 292
             V D   +  LVR+M       P   +   YP       + ++F      
Sbjct: 245 PCVADALNHGTLVRLMAGYRIDDPDTQLSLVYPNRQYVPARTRSFVEHALE 295


>gi|330819977|ref|YP_004348839.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327371972|gb|AEA63327.1| LysR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 321

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 121/295 (41%), Gaps = 8/295 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L  F   AR  SFT AA +L  +Q ++S+++  LE  +G  LF R  RG+TLTE G++
Sbjct: 11  QALSAFESAARLASFTAAARELGSTQPAVSQRVVQLEEALGAPLFERGHRGVTLTEDGAR 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     +    L     +++E      G L + T +      L   L +     PD+ ++
Sbjct: 71  LFEAVRQSLDTLRCATADIRERRA--RGALTLVTDVGFATYWLMPRLAQLKAEMPDVDVR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-IQ 184
           ++      D+  D+AD AI         +    +L    +    +P +L   R  L    
Sbjct: 129 VVTAQH-ADLQRDHADVAILFGDG-DWPACTSTRLFEEAVTPVCSPDFLAAHRRKLKGPA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+      P+   D++      +    P    L  NSY  ++   ++  G+AL 
Sbjct: 187 DLLALPLLHVQPTKPERWLDWHGWFAAHQLTAPPEPHGLTFNSYALVVHAALMNQGVALG 246

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              +V +   +  LVR +E+        +   P +      +  FR ++F + R+
Sbjct: 247 WSPLVDELVASGQLVRCVEETAVTERGYFLVRPPSRPEAPAVGRFRRWLFDRCRE 301


>gi|260551294|ref|ZP_05825495.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260405608|gb|EEW99099.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 293

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 137/298 (45%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L+ F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLQFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L     ++    E   +++++      G++RI T    G   L   L EF + YP
Sbjct: 61  LEGMALVPRVEQM----EQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQYP 116

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I LI   K I +S   AD  + + +P     +I R L    +  Y +  YL      
Sbjct: 117 LLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKIYGSQSYLAQNPPI 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H  + + D +    E +         +     +  + +S L+       G+G
Sbjct: 176 RGLEDLTQHRFVNYIDDLVYSPELY-----CLERLPLKLNANFRSSSILAQQIAVSAGAG 230

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +A+LP ++  D P L  ++E  +  + T +      L++  ++K   +++  +A  ++
Sbjct: 231 LAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWDYLRKQADKYQ 288


>gi|224826217|ref|ZP_03699319.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224601318|gb|EEG07499.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 296

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 115/293 (39%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GSF+ AAE LH++  +ISRQ+  LE  +G  LF R  R + L   G 
Sbjct: 8   LNALRAFESAARLGSFSAAAEALHVTHGAISRQVQQLEDWLGFALFERRGRRVMLNAAGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    +  +      L         +L+I  T  L  + L   L  F L YP +++
Sbjct: 68  AYLPALQTAFDGIAGATEALTARRQGR--RLQINVTPTLAMHWLLPRLTRFQLRYPGVEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   +  I+      D AIR R        +    +        +P  L       S+ 
Sbjct: 126 RLATSDAAINNQNADFDIAIR-RSQEHWRGFVAHAFLAERELPVCSPALLARH-PIASVA 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+       + +    WLA    P  +P  +    + Y   +Q  + G G+ L 
Sbjct: 184 DLAQHTLLHSET---RPVAWERWLAAAGAPALQP-AATQHFDHYYLALQAAIDGLGVTLG 239

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  ++++   +  LV  +           +  P++L     + AF  ++  +A
Sbjct: 240 PLPVIEEELASGKLVAPLPGPEVVVKGYCWVVPQSLVGDELVSAFCAWLEEEA 292


>gi|163797634|ref|ZP_02191583.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
 gi|159177109|gb|EDP61671.1| transcriptional regulator, LysR family protein [alpha
           proteobacterium BAL199]
          Length = 313

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 132/289 (45%), Gaps = 9/289 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S +WD LR F  + RSG+   AA +L ++ ++++R++S LE  +G ++F R   GL  ++
Sbjct: 7   SINWDDLRFFLAIYRSGTLRGAARELGVNHATVTRRLSTLEAALGARVFDRRPDGLAPSQ 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L      V  +L      +      P G +R++    + Q+ L   L  F  L+P 
Sbjct: 67  AGEDLLEAAERVEGELVAMHRRIVGRDDSPRGVVRLSVPPAMLQSFLARELVAFARLHPG 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I++ +   +   D++   A+ A+R+   +    L+  +++      YA+P Y+       
Sbjct: 127 IELDVDASHSYSDLARREAEVAVRMADEVT-EDLVGLRVIRYRKAIYASPAYVATADGGK 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ + D H+ I +G  +P      +W      P    R       S +  +Q    G G+
Sbjct: 186 NL-DPDVHSWIGWGAGLPYP----SWPRDTPFPNLPVRHRLF---SNILQLQAATEGLGL 237

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ALLP ++  + P +VR+         +++  Y   L+ T +++   +FI
Sbjct: 238 ALLPCFLGDEQPGVVRVPGTGTLDGKSIWVLYHHDLRKTARIRTLIDFI 286


>gi|56459973|ref|YP_155254.1| DNA-binding transcriptional activator GcvA [Idiomarina loihiensis
           L2TR]
 gi|56178983|gb|AAV81705.1| Transcriptional regulator, LysR family [Idiomarina loihiensis L2TR]
          Length = 299

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 130/292 (44%), Gaps = 16/292 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F V AR  SFT AAE+L ++Q+++S Q+  LE  + +KLF R  R L LTE+G 
Sbjct: 7   LNALKSFEVAARHLSFTKAAEELFVTQAAVSHQVKALEDFLELKLFIRRNRSLLLTEEGQ 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +++ +L     +L+   V   G L ++             L  F   +PD+ I
Sbjct: 67  EYYLELRDIFEQLAQATDKLR--LVSERGALTVSVPPSFAILWFVPRLSSFREEHPDMDI 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL--KNCREPLS 182
           ++   ++      D  D AI      +   +   +L   ++    +P  L   N +EP+ 
Sbjct: 125 RIKAVDEISGSLTDDVDVAIYYGDG-RWPGVKAYQLHEEYLWPVCSPLLLNKANIKEPI- 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L K  L+   D      +D  W   V  P  +     +  +S L++ Q  V G GIA
Sbjct: 183 --DLFKQTLLH--DETRNAWKD--WFQLVGLPQYKGDNGPVFSHSSLAL-QAAVHGQGIA 235

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           L  + +VK   D+ +LVRI    +  +   Y    +     GK+  FR ++ 
Sbjct: 236 LANNVLVKSEIDSGHLVRIFPQALQRNKAFYLVCRDNQAEIGKIATFRQWLL 287


>gi|237728971|ref|ZP_04559452.1| LysR family transcriptional regulator [Citrobacter sp. 30_2]
 gi|226909593|gb|EEH95511.1| LysR family transcriptional regulator [Citrobacter sp. 30_2]
          Length = 302

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 122/299 (40%), Gaps = 10/299 (3%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M     + L +F   A   SF+ AA ++ +  + +S  I  LE+ + I+LF R  R L L
Sbjct: 1   MKMFRLEDLTLFVRAAALNSFSDAAREVGVQPAQVSSAIKRLESTLAIRLFARSTRSLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G        ++   +     ++Q    + SG L+IA   DLG+NLL    + F   Y
Sbjct: 61  TPEGEVWLPYARQMLDVMHAGLQKIQTPEDEVSGTLQIAVPSDLGRNLLLPVFQSFRRRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCR 178
           P +++++   ++  D+  D  D A R     + +S I   +         A+P +++   
Sbjct: 121 PALRLRIFFSDQVTDVFKDPVDVAFRYGN-TEDASYIALPVAAGNRRVLVASPEWVEQNG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVL 237
            P  + +L + N +TF   + +      W  T +  +   ++   +  +    I +  + 
Sbjct: 180 APQKLDDLTQLNAMTF---VLRGRLHDRWTFTRNGEVSSVQVNGTIMSDDAEVIRRLAIA 236

Query: 238 GSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G G+A      V +   +  L  +M D       +    P   + +  ++     +  +
Sbjct: 237 GEGVAYKSWLDVSEDVRDGRLQLLMPDYQGEKVPLNMICPHRKQLSTAVRLLHEAVKAR 295


>gi|325578054|ref|ZP_08148248.1| glycine cleavage system transcriptional activator [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160287|gb|EGC72415.1| glycine cleavage system transcriptional activator [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 296

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 124/290 (42%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +G++LF R  R L LTE G 
Sbjct: 8   LNSLKSFESAARHLSFTKAADELFVTQAAVSHQIKLLEDFLGVELFIRKNRSLELTEFGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 ++V  KL      L     +P   L I+     G   L  +L +F   +P+I++
Sbjct: 68  AYFVDINKVLRKLNEATERLLTLKAEPH--LAISVPQTFGIQWLVPHLSDFNKQHPEIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++D  +     D AI   K     +L   +L   ++   AAP  L+         
Sbjct: 126 RLKGVDQDEGLLNKEIDIAIYYGKG-DWENLQVDRLGEENLVILAAPALLEKIPV-RCPD 183

Query: 185 ELDKHNLI-TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L KH LI T      + M D+  L  ++   G         +     +Q  V G GI L
Sbjct: 184 DLKKHTLIHTHTRDNWQAMADYLKLDDLNIQQGP------LFSHTFMALQAAVHGQGIVL 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               + +   +N  L  ++   +    + Y        +  +++AFR +I
Sbjct: 238 ANRILAQQEIENGYLQIVLPTELRDPKSFYVVNHLDRLDDEQIQAFRTWI 287


>gi|269963748|ref|ZP_06178066.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831481|gb|EEZ85622.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 255

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 122/255 (47%), Gaps = 6/255 (2%)

Query: 47  IKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQN 106
           ++LF+R+ R  +LTE G+ L++  S +  ++E +   L E +  P+GKL++      G+ 
Sbjct: 1   MRLFHRNTRQFSLTEDGASLYQRVSPLLSEIEQSIDGLSEQNKNPAGKLKVNLPDSFGRK 60

Query: 107 LLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPI-QSSSLIQRKLVTIHM 165
            +  ++ EFL LYP+I++ L+L ++ +D+  +  D ++     I + S L+ R +  +  
Sbjct: 61  FVMPHIAEFLNLYPEIELDLVLSDRILDVVDEGFDMSV--GNQINEDSRLVARTIYQMQS 118

Query: 166 HAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV 225
             +A+  Y++    P S+++L +HN I +  L       +    T    +    I  L +
Sbjct: 119 GIFASKEYVETFGLPRSVEDLHQHNCIVYRPLSSGRSYTWPLKDTHGEHVQFNPIGNLSL 178

Query: 226 NSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           ++  +     +   GIA +  + V++     ++V I+E        V+  Y        +
Sbjct: 179 SNISAAKIALMQHLGIAFMGRWHVEEELEQGSVVPILESYWVEPKPVWIYYSSRDNLPKR 238

Query: 283 LKAFRNFIFLKARDW 297
            + F +F+  K + +
Sbjct: 239 TRLFIDFMVEKLKSY 253


>gi|83954697|ref|ZP_00963408.1| probable transcriptional regulator [Sulfitobacter sp. NAS-14.1]
 gi|83840981|gb|EAP80152.1| probable transcriptional regulator [Sulfitobacter sp. NAS-14.1]
          Length = 313

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 118/295 (40%), Gaps = 14/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F    R  +F  AA++L ++Q ++++Q+ GLE  + ++LF R  RGL  TE+G 
Sbjct: 10  LNGLRAFAAAGRHLTFRAAADELGVTQGAVAQQVRGLEDHLNLRLFLREPRGLAFTEEGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H   S  + ++      L+ +       + I+ T       L   L  F   +P I +
Sbjct: 70  TYHIAISRAFDQMADATDALRTAPSH----VTISVTPTFASKWLIPRLAAFTQAHPGIDL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++    +      D  D A+R   P   +SL    L    + A  APH  +    P+   
Sbjct: 126 RITATERVSSFHADGIDLAVRQGNPPFGASLRADLLFEQQIVAVCAPHLAEALNTPMDAA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            + +  L+          + +            P    L+ N     +   + G GIAL 
Sbjct: 186 GIAEATLLH------DTHDLWPQFIKTVFGREVPTARGLRFNQTTLSLDAALAGQGIALA 239

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             ++V+ +     LV+ +E  ++     Y   P     +G     R+++  +ARD
Sbjct: 240 NRFLVQRDLRAKRLVQPIEGALSGGSGFYLLSPRQGSPSGAAHV-RDWLLGRARD 293


>gi|226327080|ref|ZP_03802598.1| hypothetical protein PROPEN_00941 [Proteus penneri ATCC 35198]
 gi|225204298|gb|EEG86652.1| hypothetical protein PROPEN_00941 [Proteus penneri ATCC 35198]
          Length = 275

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 115/271 (42%), Gaps = 10/271 (3%)

Query: 29  LSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESS 88
           ++Q+++S QI  LE  +G+KLF R  R L LTE+G   +    E++  +     +L   S
Sbjct: 1   MTQAAVSHQIKTLEEFLGLKLFRRRNRSLLLTEEGQSYYLDIKEIFSSINEATRKLLARS 60

Query: 89  VKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRK 148
               G L ++ +       L   L  F   YP I +++   +++ D   D  D AI   +
Sbjct: 61  A--KGALTVSLSPSFAIQWLVPRLSGFNQAYPGIDVRIQAVDREEDKLADDVDVAIFYGR 118

Query: 149 PIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWL 208
               + L   +L   ++    AP  L   +   +  +L  H L+   D   +  + +   
Sbjct: 119 G-NWTGLRTDRLYAEYLIPVCAPSLLTGEKPLKTPSDLIYHTLLH--DTSRRDWQSYVRQ 175

Query: 209 ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK---DNPNLVRIMEDVITP 265
             +   I   +      +    ++Q  V G G+AL+ + + +   ++  LVR   DV+  
Sbjct: 176 LEIQNQINVQQGPIF--SHSSMVIQAAVHGQGVALVNNVMARSEIESGRLVRPFPDVLVS 233

Query: 266 SFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               Y    ++    GK+ AFR +I  +A +
Sbjct: 234 KNAFYLVCQDSQAELGKIAAFRQWILSQAAN 264


>gi|298294351|ref|YP_003696290.1| LysR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296930862|gb|ADH91671.1| transcriptional regulator, LysR family [Starkeya novella DSM 506]
          Length = 316

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 138/299 (46%), Gaps = 8/299 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +  WD  R+   VA +     AA  + ++ S++ R++  +E  +G  LF RH  G  LT 
Sbjct: 7   NLAWDDFRLIKAVADAKGLPAAAAAMGVNHSTVFRRLKQIEEALGAVLFERHRTGYALTP 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++  + + +  ++     +L      PSG+LR+ T   L  +LL   L  F   YP+
Sbjct: 67  AGEEMVALANRLDEEITAVGRKLAGREPAPSGELRVTTPDSLLIHLLMPMLATFRERYPE 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ ++L N+ +++S   AD A+R        +L+ R++  I    Y          E +
Sbjct: 127 VRLDMVLSNQALNLSKRDADVAVRATDN-PPENLVGRRVARIAWALYGRAADFPAPGE-V 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S +ELD HN ++ GD +              +    P     ++NS L + +    G GI
Sbjct: 185 SPEELDAHNWVSLGDSLGSLKT-----VKFVQENVAPEKVAYKINSVLGLAEAVEAGIGI 239

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK-ARDWKF 299
             +P +I    P+LVR+       +  ++      L+++ +++AF +F+  + AR  +F
Sbjct: 240 GHIPCFIGDARPSLVRLGPANDDYAADLWLLTHPDLRHSPRVRAFLDFLGGEIARHRRF 298


>gi|260777577|ref|ZP_05886470.1| D-serine dehydratase transcriptional activator [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605590|gb|EEX31875.1| D-serine dehydratase transcriptional activator [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 313

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 122/298 (40%), Gaps = 8/298 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
               KL  F V AR GSF  AA +L L+ S++S QIS LE E+ ++LF R  R +TLT  
Sbjct: 16  IQLSKLYTFEVAARLGSFALAAHELCLTPSAVSHQISKLENELKLQLFERQHRKVTLTAD 75

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L    +    +L ++  +++      SG L I        + L   L +F   YP I
Sbjct: 76  GEQLFTSVTLALSQLNSSIEQVKS--GHISGGLTIYARPSFAHDWLAPRLHDFCEQYPSI 133

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I+LI  N  +D++    D AI        +S    KL   H+    +PHY         
Sbjct: 134 DIKLITGNDTLDLNRHGIDLAIYYSNVTPDASW-SLKLNEEHVIPVCSPHYANQYALNDE 192

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV--NSYLSIMQYCVLGSG 240
            ++L    L+          +   W    +        +C  V  +     +     G+G
Sbjct: 193 TRDLSHCTLLHDNQAWHIHSQLDEWKYWHEHYAEFDIQNCRSVGFDQSTLAVSAAKHGAG 252

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           IA+    +VK++    +LV    + +  S   Y+        + K K F ++I  + +
Sbjct: 253 IAMGRWSLVKEDIERGDLVMPFPNRLIKSGYYYYLIGVQRTISAKQKCFADWISRQLQ 310


>gi|260466743|ref|ZP_05812929.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029473|gb|EEW30763.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 293

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 134/290 (46%), Gaps = 11/290 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  VAR+G    AA++L L+ +++SR+I+ LE  +  KLF R   G  LT  
Sbjct: 1   MNWDDVRIFLAVARAGQILGAAKRLELNHATVSRRIAALEEALRTKLFRRLTTGSELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +   +   +   +   +  +       SG +RI      G   L   L E   L+ ++
Sbjct: 61  GERFLDIAERMEGDMIAARSTISGEGDDVSGTVRIGAPDGFGVAFLAKRLGELTALHREL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            IQL+   +   +S   AD AI + +P +   L+  KLV   +  +A+  Y +    P +
Sbjct: 121 TIQLVPVPRSFSLSRREADIAITVERPTE-GRLVAGKLVDYTLGLFASRAYAQAHGLPRT 179

Query: 183 IQELDKHNLITF-GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
             EL +H LI +  DLI     D+    + D        +   ++S L   +    G+GI
Sbjct: 180 AAELGQHTLIGYVPDLIVSPSLDYAAEFSPDW------RTSFAISSALGQAEAVRSGAGI 233

Query: 242 ALLPDYIVKDNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
            +L  ++ +  P L+ +  DV+ P     +  Y E+++   +++   ++I
Sbjct: 234 GILHTFVARSMPELMAV--DVVAPIRRAYWLVYHESVRPLRRVQIVASYI 281


>gi|167924217|ref|ZP_02511308.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei BCC215]
          Length = 304

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+ LF R  RGL LT  G 
Sbjct: 12  LNALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDALGVALFERLPRGLALTADGL 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +P + +
Sbjct: 72  AYFADVRRALNLIGDATDRLAKRRAN----VTISTTPSFASRWLIPRLASFGDEHPGVDL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + ++A  +P  L         +
Sbjct: 128 RVIADSQFATFQGDGVDLAIRYGKPPFGKGLVTRLLFPVDIYAVCSPALLATPGALARAR 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+     +        +LA +   +        + N     +   + G G+AL 
Sbjct: 188 DLAGHALLHDAHDL-----WPEFLAALPERVAIDPAKGPRFNQSSLAIDAAIAGHGVALA 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V  +     L R+ +  +  S   Y   P   +  G +     ++  +A+
Sbjct: 243 SDQLVARDIEAGRLRRLFDFALPLSVGYYIVRPSEPRRPGDIAQTEAWLIRQAQ 296


>gi|124268501|ref|YP_001022505.1| LysR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124261276|gb|ABM96270.1| transcriptional regulator, LysR family [Methylibium petroleiphilum
           PM1]
          Length = 317

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 131/298 (43%), Gaps = 8/298 (2%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
             D    +  F  V  SG F  AA +L+LS   ++R ++ LE  +G++L  R  R + +T
Sbjct: 18  DMDRLQAMTTFVAVVDSGGFASAARKLNLSPPVVTRAVAELEERLGLRLLTRTTRVVRVT 77

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G++       +   ++  +I    +   P G L +   +  GQ  +   L  +L  +P
Sbjct: 78  DAGARFAEDCRRILADIDEAEITATGTHATPRGTLTLTAPVLFGQLYVTPILVSYLQRFP 137

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           +++ Q +  ++ +++  +  D A+R+ + +  SSL   ++  +     AAP YL+    P
Sbjct: 138 EVEAQCLFLDRVVNVVEEGIDVAVRIGE-LPDSSLQAVRVGRVSRVLVAAPAYLQAQGTP 196

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L  H L++   + P     FN    V     +PR+  +  +S    +   + G G
Sbjct: 197 RRPEDLADHTLVSAAGVNPVSEWRFNNAGKVLMQRVQPRMRTVTNDS---AIAATLAGLG 253

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I  L  Y V  +     L  ++E        V+  + E  + T K++AF +    + R
Sbjct: 254 ITRLLSYQVAAHLRSGALQVVLEAFEPNPLPVHVVHHEGRRATQKVRAFVDLAVDRLR 311


>gi|53723128|ref|YP_112113.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|76819263|ref|YP_336376.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|126458455|ref|YP_001076884.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167744052|ref|ZP_02416826.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 14]
 gi|167821252|ref|ZP_02452932.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 91]
 gi|167851072|ref|ZP_02476580.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei B7210]
 gi|167899702|ref|ZP_02487103.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 7894]
 gi|167916357|ref|ZP_02503448.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 112]
 gi|52213542|emb|CAH39595.1| putative LysR family transcriptional regulator [Burkholderia
           pseudomallei K96243]
 gi|76583736|gb|ABA53210.1| putative LysR family transcriptional regulator [Burkholderia
           pseudomallei 1710b]
 gi|126232223|gb|ABN95636.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
          Length = 304

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+ LF R  RGL LT  G 
Sbjct: 12  LNALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDALGVALFERLPRGLALTADGL 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +P + +
Sbjct: 72  AYFADVRRALNLIGDATDRLAKRRAN----VTISTTPSFASRWLIPRLASFGDEHPGVDL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + ++A  +P  L         +
Sbjct: 128 RVIADSQFATFQGDGVDLAIRYGKPPFGKGLVTRLLFPVDIYAVCSPALLATPGVLARAR 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+     +        +LA +   +        + N     +   + G G+AL 
Sbjct: 188 DLAGHALLHDAHDL-----WPEFLAALPERVAIDPAKGPRFNQSSLAIDAAIAGHGVALA 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V  +     L R+ +  +  S   Y   P   +  G +     ++  +A+
Sbjct: 243 SDQLVARDIEAGRLRRLFDFALPLSVGYYIVRPSEPRRPGDIAQTEAWLIRQAQ 296


>gi|113869300|ref|YP_727789.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528076|emb|CAJ94421.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 304

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 119/297 (40%), Gaps = 9/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + ++ F  +  +G+   A  +  +++S +SRQ+  LE + G +L  R  R L LT  
Sbjct: 1   MDLNLIQAFVDIVDAGNLAEAGRRRGVTRSQVSRQLRELEHQAGAQLLRRTTRRLELTGP 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L++    +  ++ + Q E+        G +R++    LG   +   L +F   +P I
Sbjct: 61  GHALYQHGVRILQEVASAQAEIDSLGRTLRGHVRVSVPTGLGDAYIAPLLLQFARKHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++   N+  D+     D A+++         + R++  I    YA+P YL +     +
Sbjct: 121 TLRVFFANRVNDLIAAEIDVALKVTSAPPLDH-VAREICDIRWQLYASPEYLADIPPVQA 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L   N +       +       L    + +       LQ  ++L + +    G GI 
Sbjct: 180 PPDLTGCNFLCPPYPPRQFPLS---LYRDSQRVDVALTPKLQSENFLFLARAVREGLGIG 236

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKA 294
           +LP YI  +      LV ++ D         ++      L  +   +A   F+  + 
Sbjct: 237 MLPVYIGWEEVRAGRLVPVLPDWRPEGLGNKLFIITTPNLHPSMATRALIGFLREEL 293


>gi|94314343|ref|YP_587552.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93358195|gb|ABF12283.1| transcriptional regulator, LysR family [Cupriavidus metallidurans
           CH34]
          Length = 304

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 125/297 (42%), Gaps = 11/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF VVAR+ + T AA +L +SQS++SRQI+ LE  +G++LF R   G+ LTE G 
Sbjct: 7   LNPLKVFEVVARAKNLTTAANELRVSQSAVSRQIAVLEEYLGVQLFTRERIGVKLTEVGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R     + ++      + +        +R+ T   L    L   L  F L YPD+++
Sbjct: 67  AYARRIGPAFEEISEATKFVTQKYSDN--VIRLRTYTTLTARWLIPRLPHFKLQYPDVEV 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR--EPLS 182
            +   N  +D   +  D AI L       +     L+   +    +P +L+         
Sbjct: 125 LITNSNAPLDFGTEQCDLAIVLGDG-NWPNAEATLLLEDVIEPVCSPAFLEAFHGSTEQL 183

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           ++ L    L+       +  +   WLA V       +   +  +S +   Q      GIA
Sbjct: 184 LESLQSKRLLVSKY---RKNDWPTWLAHVGMGHVFDKAEKMVFSSSILTWQAATDNLGIA 240

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +   +++  +     LV      +      Y   P   + +GK+ AF+ ++  +AR+
Sbjct: 241 IGQQHMLDPDLKAGRLVCPFARPLRTGRDHYIVTPSVQRYSGKIAAFKEWLVREARE 297


>gi|126640207|ref|YP_001083191.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
 gi|169797694|ref|YP_001715487.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|184156448|ref|YP_001844787.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213155512|ref|YP_002317557.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215485048|ref|YP_002327289.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|239503093|ref|ZP_04662403.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB900]
 gi|260557637|ref|ZP_05829851.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|301347770|ref|ZP_07228511.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301511241|ref|ZP_07236478.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301597251|ref|ZP_07242259.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332853584|ref|ZP_08434836.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332869299|ref|ZP_08438697.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332875580|ref|ZP_08443392.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|126386091|gb|ABO10589.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii ATCC 17978]
 gi|169150621|emb|CAM88530.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|183208042|gb|ACC55440.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213054672|gb|ACJ39574.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213987700|gb|ACJ57999.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|260408810|gb|EEX02114.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|322506314|gb|ADX01768.1| transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|332728548|gb|EGJ59921.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|332732807|gb|EGJ64022.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332736153|gb|EGJ67168.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 293

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 138/298 (46%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L+ F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLQFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L     ++    E   +++++      G++RI T    G   L   L EF + YP
Sbjct: 61  LEGMALVPRVEQM----EQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQYP 116

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL      
Sbjct: 117 LLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKIYGSQNYLAQNPPI 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H  + + D +    E +         +     +  + +S L+       G+G
Sbjct: 176 RRLEDLTQHRFVNYIDDLVYSPELY-----CLERLPLKLNANFRSSSILAQQIAVSAGAG 230

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +A+LP ++  D P L  ++E  +  + T +      L++  ++K   +++  +A  ++
Sbjct: 231 LAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWDYLRKQADKYQ 288


>gi|329848195|ref|ZP_08263223.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
 gi|328843258|gb|EGF92827.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
          Length = 295

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 126/300 (42%), Gaps = 16/300 (5%)

Query: 1   MSF---DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL 57
           M     DW++LR FY  A  GS + AA ++ L+Q ++SRQI+ LE+ + + LF R  + L
Sbjct: 1   MRMNNPDWNQLRAFYATAVHGSLSAAAREIGLTQPTLSRQIAALESALNLTLFERVGKRL 60

Query: 58  TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLL 117
            LTE G  +      +      T +     +    G++ I+ +      +L   +     
Sbjct: 61  VLTETGHGVLEHVRAMGEAAMATTLSATGHAETIEGRVSISASDAYAAYVLPDIVARIRR 120

Query: 118 LYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
             P + I ++  NK  D+    AD A+R  +P +   LI +++ T     +A+  ++   
Sbjct: 121 EAPQVTIVVVASNKLSDLRRREADIALRHVRP-EEPDLIGKQVRTSKAAFFASRDWVALH 179

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEP---RISCLQVNSYLSIMQY 234
             P    ++    LI F        ED    A   R +G P   R   L   + + + + 
Sbjct: 180 GLPQKPADIAG-ALIGF--------EDVGRFAAFMRDVGVPVEGRDFRLVSENSVVVWEM 230

Query: 235 CVLGSGIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              G G+  +   I    P++V ++ D+      ++      L+ + +++   + +  + 
Sbjct: 231 VRRGLGVCAMLREIAARVPDVVEVLPDLNPVEVPLWLVTHRELRTSRRIRVVYDILAEEL 290


>gi|255595466|ref|XP_002536314.1| Glycine cleavage system transcriptional activator, putative
           [Ricinus communis]
 gi|223520103|gb|EEF26069.1| Glycine cleavage system transcriptional activator, putative
           [Ricinus communis]
          Length = 311

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 126/297 (42%), Gaps = 10/297 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +      LR F  VAR GS   AA  L ++  ++S+QI  +E  +G  LF R ++ L LT
Sbjct: 13  LPISLVSLRTFVEVARCGSMKDAARNLGVTPGAVSQQIKIVEERLGAPLFERASKDLHLT 72

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L    +  + +++   +E  +        L + T      + L   + +F  LYP
Sbjct: 73  AEGVRLIEALNMPFQQIQDA-VEDFDHRKPKRNTLVVTTVPSFASSWLVPRIGKFAKLYP 131

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++++      +D+  +  D AIR         +   +L+T  +   A+P +L+N    
Sbjct: 132 DIEVKVDSSVALVDLRHEPFDIAIRHGSG-NYPGMSVTQLLTPQLVVVASPEFLRNIPSI 190

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGS 239
            +  +   H L+   D +    +   W           R +     +    +++  V   
Sbjct: 191 QTPADCLAHPLLQDRDRV----DWPRWFRAHGINDATGRAARGSSFSDDSLMIKAAVASQ 246

Query: 240 GIALLPDYIVKD--NPNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+AL+ D   ++  +  LVRI +   +    + YF          +++AFRN++  +
Sbjct: 247 GLALVRDIYAEEAISSGLVRIPIAASLGTPLSYYFVTRMQDAQKSRIQAFRNWLLGE 303


>gi|167829595|ref|ZP_02461066.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|167908013|ref|ZP_02495218.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|254300790|ref|ZP_04968234.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157811290|gb|EDO88460.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 304

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+ LF R  RGL LT  G 
Sbjct: 12  LNALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDALGVALFERLPRGLALTADGF 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +P + +
Sbjct: 72  AYFADVRRALNLIGDATDRLAKRRAN----VTISTTPSFASRWLIPRLASFGDEHPGVDL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + ++A  +P  L         +
Sbjct: 128 RVIADSQFATFQGDGVDLAIRYGKPPFGKGLVTRLLFPVDIYAVCSPALLATPGALARAR 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+     +        +LA +   +        + N     +   + G G+AL 
Sbjct: 188 DLAGHALLHDAHDL-----WPEFLAALPERVAIDPAKGPRFNQSSLAIDAAIAGHGVALA 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V  +     L R+ +  +  S   Y   P   +  G +     ++  +A+
Sbjct: 243 SDQLVARDIEAGRLRRLFDFALPLSVGYYIVRPSEPRRPGDIAQTEAWLIRQAQ 296


>gi|329891190|ref|ZP_08269533.1| glycine cleavage system transcriptional activator [Brevundimonas
           diminuta ATCC 11568]
 gi|328846491|gb|EGF96055.1| glycine cleavage system transcriptional activator [Brevundimonas
           diminuta ATCC 11568]
          Length = 313

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 129/296 (43%), Gaps = 12/296 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F   AR GSF  AAE+L ++  ++SR +  LE  +G++LF R  R + LT  G +L
Sbjct: 12  ALRAFDAAARLGSFREAAEELGVTPGAVSRHVKALEMRLGLRLFDRFNRSVRLTADGKRL 71

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            +  ++ + +LE+    ++    +   +LRI     L    L   L  F    PD+ + +
Sbjct: 72  AQGVADAFERLESALEAVRPGRSR---QLRITALPSLASKWLSPRLHRFSEENPDLDLIV 128

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             +++  D+S   AD A+R  +       + R+LV   +    AP +    R      +L
Sbjct: 129 FAEDRIADLSNGEADVALRYGEG-PYPGQVARRLVNERLIPVCAPSF-AAARRLNQPSDL 186

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRP-IGEPRISCLQ---VNSYLSIMQYCVLGSGIA 242
               LI          +   W A  +   + +PR++ L+    +     ++  + G G+A
Sbjct: 187 LDVVLIHETWHDMPYADRMGWKAWFESAGVDDPRVNHLRGPHFSHSHLALEAALSGRGVA 246

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L    +  D+     L++ ++  +T     +        +  KL+ F N+I  ++R
Sbjct: 247 LTSAPLAADDLREGRLIQPVDHALTNDLAYWAVVLPERADEPKLRRFLNWIVAESR 302


>gi|237814831|ref|ZP_04593829.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
 gi|237789668|gb|EEP63878.1| LysR family transcriptional regulator [Brucella abortus str. 2308
           A]
          Length = 265

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 115/260 (44%), Gaps = 8/260 (3%)

Query: 41  LETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATT 100
           +E  +G++LF R  R LT TE G   +    ++   ++  +  + E +  P G +RI   
Sbjct: 1   MEKHLGVRLFNRTTRKLTPTEHGRVFYDGALKILEAVDEAEAAVAELAKNPKGSIRITAP 60

Query: 101 IDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKL 160
           +  G+ L+   + EF   YPDI+++L L + ++DI  +  D A +L   +++S+L  R +
Sbjct: 61  LGFGRRLIASGIPEFHDRYPDIEVRLRLSDHEVDIMSEGVDVAFKLG-VLENSNLRMRGI 119

Query: 161 VTIHMHAYAAPHYLKNCREPLSIQEL--DKHNLITFGDLIPKCMEDFNWLATVDRPIGEP 218
           +       AAP YL+    P S + L  D+H+ +      P   E +  L T +      
Sbjct: 120 MNCERVVCAAPQYLERHGTPQSPEALLSDRHHCLLL--RFPGSKEYYWLLQTPEGLRKFE 177

Query: 219 RISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPE 275
                  +    + Q+ + G GI   P + VK+   +  L  I++        +   YP 
Sbjct: 178 VTGPYGSDDGDVLTQWALGGRGIINKPLFEVKEYIRDGRLTPILQHTPPAPIQLAAIYPH 237

Query: 276 ALKNTGKLKAFRNFIFLKAR 295
                 K++   +F+  + +
Sbjct: 238 KRLQDPKVRLIIDFMTERCQ 257


>gi|217422134|ref|ZP_03453637.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
 gi|217394365|gb|EEC34384.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           576]
          Length = 309

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+ LF R  RGL LT  G 
Sbjct: 17  LNALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDALGVALFERLPRGLALTADGF 76

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +P + +
Sbjct: 77  AYFADVRRALNLIGDATDRLAKRRAN----VTISTTPSFASRWLIPRLASFGDEHPGVDL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + ++A  +P  L         +
Sbjct: 133 RVIADSQFATFQGDGVDLAIRYGKPPFGKGLVTRLLFPVDIYAVCSPALLATPGVLARAR 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+     +        +LA +   +        + N     +   + G G+AL 
Sbjct: 193 DLAGHALLHDAHDL-----WPEFLAALPERVAIDPAKGPRFNQSSLAIDAAIAGHGVALA 247

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V  +     L R+ +  +  S   Y   P   +  G +     ++  +A+
Sbjct: 248 SDQLVARDIEAGRLRRLFDFALPLSVGYYIVRPSEPRRPGDIAQTEAWLIRQAQ 301


>gi|149909259|ref|ZP_01897916.1| transcriptional regulator, LysR family [Moritella sp. PE36]
 gi|149807783|gb|EDM67729.1| transcriptional regulator, LysR family [Moritella sp. PE36]
          Length = 311

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 132/294 (44%), Gaps = 9/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + + +F+ +  +GS   AA  L+L +S+ISR++ GLE E+G+KLF+R  R +TLT  
Sbjct: 1   MKTEDIALFHRIVEAGSLVDAAGLLYLPKSTISRRLQGLEDELGVKLFHRQNRAMTLTTA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS  +  T  +   LE T  E+ +   + SG LRI         L+   + +F+ L P +
Sbjct: 61  GSHFYNKTLSLLASLELTITEITDKDAEVSGHLRILIFPLPNLMLIAHGIYQFMDLNPKL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQ--SSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++LI+  + +D+     D A  + +        ++ R +++  +H  A+P YL     P
Sbjct: 121 TVELIVTAEPLDMIRHNIDIAFMVEEAFNNIDIDMVARPVISEILHFVASPEYLYKAGTP 180

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             I E+ +HN I +     +   +      +      P    + +NS    ++  +   G
Sbjct: 181 RVISEMSQHNSIMYRFPNGQVFNELP----LGNNEFLPVSGNICLNSIQLALESALASRG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           IA +P+ +  D      LVR+  DV       Y  YP     +   +   + + 
Sbjct: 237 IAYIPERLCADEVKQGTLVRLFTDVEPYEGKCYLVYPSRRFVSLASQRLIDHML 290


>gi|148260442|ref|YP_001234569.1| LysR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326403636|ref|YP_004283718.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|146402123|gb|ABQ30650.1| transcriptional regulator, LysR family [Acidiphilium cryptum JF-5]
 gi|325050498|dbj|BAJ80836.1| LysR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 322

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 129/294 (43%), Gaps = 9/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR F  +AR G+ + AA +L + QS++ R+++ LE   G++L  R  RG  LT  
Sbjct: 1   MDWDDLRSFLAIAREGTLSAAARRLGVRQSTMGRRLAALEARAGVRLLERTPRGFRLTAA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G         +       +  +    V+  G +R+ T  D   ++L   L +    YP I
Sbjct: 61  GEAARAEVERMETAALAAERAVSGRDVRLEGTVRLTTVSDFAPSVLMPALADLADRYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++LI D++ + ++   AD A+RL +P +  SL  R++ T+    YA+  YL     P  
Sbjct: 121 VVELIADDRTLSLAAREADLALRLARP-RGQSLRGRRIGTVSFGLYASETYLAARSVPAW 179

Query: 183 I-QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              + + H LI   D      E           +       L+ +S +S +     G GI
Sbjct: 180 PGSQGEGHRLILSRDETGAYPE-----LDALAAMAPKAAVALRTDSRVSQLAAARAGLGI 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           A+L  ++      L RI +    P   ++    E  ++  +++A  + +  + R
Sbjct: 235 AVLGHHVAAGAG-LTRI-DSPPLPEREIWLVQHEDTRDVPRIRAVADALAARMR 286


>gi|209543865|ref|YP_002276094.1| LysR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531542|gb|ACI51479.1| transcriptional regulator, LysR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 305

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 123/294 (41%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             +++R F  VA  G+    A +    QS+I+R +  LE  +G+ L  R  R   LT++G
Sbjct: 7   SLERMRTFVRVAERGNLAAVARETGAGQSTITRHLRELEDALGVSLLTRTTRRTALTDEG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           ++ +    ++   +E    E++++    +G +RI+ T  LG   +   +  F    P I+
Sbjct: 67  TRYYAHCVQILSLVEQASQEMRDTRQATAGTVRISCTGALGVLHVSPLIYAFQDQNPGIR 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++  L ++ ID+  D  D AIRL  P+   ++  R L        A+P +L+        
Sbjct: 127 VEFGLTDERIDLVRDGVDIAIRLG-PLSDCAMKLRSLGESERLLVASPEWLQRTGPVRRP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L     +    +     +     + + R    P    L V+  L+  +  + G G   
Sbjct: 186 EDLRDREGVRMSRV--HGSDRLVLRSVMGRNHVVPFHGRLIVDHGLAAREAFLAGRGFGP 243

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              ++V+D   +  LV ++ D   PS  +            +++    F+  + 
Sbjct: 244 AHRWLVEDCLRDGRLVPLLPDYTLPSAPLSMLIAPERTTLARIRLCVEFLAEQV 297


>gi|146308246|ref|YP_001188711.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576447|gb|ABP85979.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp]
          Length = 307

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 120/297 (40%), Gaps = 8/297 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D + +++V   V  + SF   A+ L +S  S++R ++ LE  +G  L  R+ R L LTE
Sbjct: 1   MDRFQEMKVLLAVTEAESFAGGAKLLGISPPSVTRAVAALEARLGTLLLARNTRSLRLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +       +  +LE  +      SV+P G+L +   +  G+  L   + ++L  YPD
Sbjct: 61  AGQRYVEDCRRILLELEEAEELAAGGSVRPRGRLTVTAPVMFGELFLIPRITQYLDSYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I  +L ++ +++  +  D A+R+   +        ++  I     AAP +L     P 
Sbjct: 121 VEINALLVDRVVNMMEEGIDVAVRIGS-LPEGDHQALQVGQIRPVVCAAPAFLDRVGRPQ 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              E+    ++            F      D   G        V+S  + +    LG G 
Sbjct: 180 HPHEVRDAPIVMSSASGLLSHWQF---VGADGVFGFTPTPRFTVSSNQAAIGAARLGWGY 236

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +  Y V        L  ++E    P+  V+  +    + + K++ F +      R
Sbjct: 237 TRVLSYQVAAAVARGELELVLEAFEPPALPVHIIHQGGRQVSAKVRTFVDHCAASFR 293


>gi|149201708|ref|ZP_01878682.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
 gi|149144756|gb|EDM32785.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
          Length = 298

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 128/307 (41%), Gaps = 27/307 (8%)

Query: 1   MSFD-----WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHAR 55
           M  D      + LRVF    R GSFT AA +L ++Q+++S Q++ LE  +G+ LF R + 
Sbjct: 1   MPMDRPDLPLNGLRVFEAAYRQGSFTRAAIELRVTQAAVSHQVARLEDRLGVTLFVRASG 60

Query: 56  GLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEF 115
           GL  T++G  L+ V    +  +  T   +          L+I          L   L EF
Sbjct: 61  GLVPTDEGRALYPVLEHGFDAMARTLDRITGHRHIE--TLKIGVVTTFAVGWLWPRLPEF 118

Query: 116 LLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAP---H 172
              +P I +++  +N  ++I  +  D AIR       + L    L+   +    AP    
Sbjct: 119 RQEHPSIDLRISTNNNRVEILREGLDMAIRYGSG-SWTGLESDVLLEAPLAPLCAPSMAE 177

Query: 173 YLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIM 232
           YL       + + L +  L+       +  E   W A        P ++    +S L++ 
Sbjct: 178 YL------TTPESLSREVLL----RSYRSDEWPRWFAEAGALC--PPLTGPIFDSSLAMA 225

Query: 233 QYCVLGSGIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +    G G+ALLP  +  +   +  LV+    +++ S      +P     T  ++ FR++
Sbjct: 226 EIASDGGGVALLPVEMFTNRIADGRLVQPFSTMVSASR-YCLTWPADRPPTPAMRDFRSW 284

Query: 290 IFLKARD 296
           +   + +
Sbjct: 285 LLTASAE 291


>gi|319764161|ref|YP_004128098.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|317118722|gb|ADV01211.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
          Length = 307

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 126/293 (43%), Gaps = 6/293 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +RVF  VA  G F  AA  L ++ ++++R ++ LE +VG +L  R  R ++LTE G+   
Sbjct: 3   MRVFQAVADEGGFAAAARALDMAPATVTRFVADLERDVGARLLQRTTRRVSLTEVGAAYL 62

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                +  ++   +   QE +    G LR+  +  L  ++L   + +F   +P + + + 
Sbjct: 63  ARVRTILAEVGEARAMAQEYTGGMGGVLRVCASPALATHILAPLVAQFRQRHPAVLLDIH 122

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           +   D D+ +   D  +        + LI R   +      A+  Y      P + QEL 
Sbjct: 123 VRIGD-DLPIADHDITLLGTPSDYDADLIARPFASTVGVLCASLAYQGRRGAPRTPQELS 181

Query: 188 KHNLITFGDL--IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +H+ +    +  +   +   +  A  +R           VN   ++M   + G+GIA+L 
Sbjct: 182 EHDCLLADHMADMRHGVVRLSHPAHGERLTEVAVRPVCVVNHSDTLMGIALGGAGIAVLS 241

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             +V ++     LVR++       +T+Y   P       + +AF +F+    R
Sbjct: 242 VDLVAEHLQSGRLVRVLAPWTCGHYTLYAALPSRKFMPTRTRAFLDFLSEHTR 294


>gi|126734932|ref|ZP_01750678.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           CCS2]
 gi|126715487|gb|EBA12352.1| transcriptional regulator, LysR family, putative [Roseobacter sp.
           CCS2]
          Length = 292

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 125/292 (42%), Gaps = 6/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AA+QL +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAFQVARKGTVSGAADQLGVHHATVIRHIDALEQRLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L +V      +       ++      SG L + T++ +   +L   L  F   +P+++
Sbjct: 63  QDLLQVAQATDDQFTQLAGRIKGQGEGVSGDL-VVTSLGMASRMLTPILVNFQAEHPEVR 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++    ++   +    A  AIR     +    + +  +   M   A+  Y+     P   
Sbjct: 122 VRYRTGDRVFRLEYGEAHVAIRAGTMPEEPDNVVQPFLQQQMALVASEAYIARHGRPKDE 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +T  +   +      WL    R +        +     ++    V G+GI  
Sbjct: 182 DDLKNHVFVTHDNDKSRA-PFTRWL----RDMVSEDRFVYRATDNRNMQDAIVAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +    ++ +P L  ++    T S  ++      L  T K+++F  F+  + +
Sbjct: 237 VLAQELRMHPELTEVIPRQETWSAPLWIVTHVDLHRTAKVQSFLRFLKDRIK 288


>gi|87118799|ref|ZP_01074698.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86166433|gb|EAQ67699.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 296

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 115/293 (39%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              ++ F    R  S   AA++L ++  +IS+QI  LE  + ++LF R  + + LTE G 
Sbjct: 7   LKAMQAFEAAGRHQSLKKAADELCVTTGAISQQIKLLEAHLEVELFKRLNKSVRLTEAGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
               +  + +  L     + Q  S +    + I+     G   L   L++F   +PDI +
Sbjct: 67  ACLPLIEQGFELLGDAAAKAQTYSEQKL--ITISVAPSFGAKWLLPRLEQFRRKHPDIDL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++    + ID + D  D +IR    I+   +    L    +    +PH +  C    S++
Sbjct: 125 RIDASTRLIDFAHDDVDISIRYGA-IKEKGMHVEALSHEELFPVCSPHLMTQC---ASLE 180

Query: 185 ELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            L  + L+        K    +      +    E      + +    ++Q  + G G+A+
Sbjct: 181 ALSDYPLLHLERRSADKSFPGWAEWIEENGLNKEAFKHGPRFSMSSMVLQAAIDGQGVAM 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
               +  D+     L+R+    +   +  +    + L     +  F ++I  +
Sbjct: 241 ASSVLAADDLKTGRLIRLFPQSLRAKYHYHLICTKNLSQRADVVKFIDWIKQE 293


>gi|126173884|ref|YP_001050033.1| LysR family transcriptional regulator [Shewanella baltica OS155]
 gi|125997089|gb|ABN61164.1| transcriptional regulator, LysR family [Shewanella baltica OS155]
          Length = 295

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 127/298 (42%), Gaps = 15/298 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S T A+++LH++  ++S+QI  LE  +G  LF R  + ++LT++  
Sbjct: 8   LNSLRAFEAAARLQSMTLASKELHVTHGAVSKQIRVLEDYLGFALFVRLHKKVSLTDEAK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L +   +L+    KP   L I     L  N L   +++F   +P + +
Sbjct: 68  RYLPHVQAALQTLSSATSDLRRQPSKPQ-TLAINVLPSLTINWLIPRMEQFKSRHPHLYV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L + +  +D S    D AIR    I   ++ I  KL+   +    AP       +  +I
Sbjct: 127 DLSIGDFAVDFSQGRYDIAIRSCTAIPKGANYI--KLMDEDLCLVCAPSL---APKLQNI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++  H  +      P+  E   W   V   + +  +    V  +  + Q    G G AL
Sbjct: 182 EDI-NHVTLLKHTTRPELWEY--WAEKVGLTLTQ--VQTFGVEHFYMLSQAAASGMGAAL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +P + +++   N +LV   +   T  +  Y   P++     K +AF +++      ++
Sbjct: 237 IPRFFIEEQLANGSLVIPFDAPFTSPYRYYLLTPKSPSLPLKAQAFIDWLLEVFAPYR 294


>gi|229096915|ref|ZP_04227884.1| Transcriptional regulator, LysR [Bacillus cereus Rock3-29]
 gi|229115904|ref|ZP_04245301.1| Transcriptional regulator, LysR [Bacillus cereus Rock1-3]
 gi|228667566|gb|EEL23011.1| Transcriptional regulator, LysR [Bacillus cereus Rock1-3]
 gi|228686525|gb|EEL40434.1| Transcriptional regulator, LysR [Bacillus cereus Rock3-29]
          Length = 305

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 14/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 7   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 66

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   L  F  LYP
Sbjct: 67  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQYGSLTIGSLLTVVNYLLPPTLLHFNTLYP 126

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L        +  +  D  I    P+Q   ++   L    +       +  + 
Sbjct: 127 NIELSVLGLRTGEIREKLFQNELDIGITF-LPVQDKEIVSIPLYKSELTLVIPIGHPLSE 185

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            + +SI+EL  + LI    L+PK       L T  +         L++++  S++Q    
Sbjct: 186 LDHVSIKELQNYPLI----LLPKNFYLTELLTTYCQNFSFKPKPILEISTMESLIQMVSK 241

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G GI +LP    D++  +N   ++I  +  TP+  +   Y +        + F  
Sbjct: 242 GMGITVLPKPYIDFLQNENIQAIKI--EDPTPTIDIGLIYRKDKYMCAATREFIE 294


>gi|229184642|ref|ZP_04311843.1| Transcriptional regulator, LysR [Bacillus cereus BGSC 6E1]
 gi|228598855|gb|EEK56474.1| Transcriptional regulator, LysR [Bacillus cereus BGSC 6E1]
 gi|324326445|gb|ADY21705.1| transcriptional regulator, LysR family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 300

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 132/295 (44%), Gaps = 16/295 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKN 176
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       + L  
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISTPLYKSELIIVVPTGHQLAE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
               +SI EL  + LI    L+PK       + +  +         L++++  S++Q   
Sbjct: 181 HNH-VSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPKPILEISTMESLIQMVS 235

Query: 237 LGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F 
Sbjct: 236 KGMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFI 288


>gi|167835123|ref|ZP_02462006.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 293

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 122/294 (41%), Gaps = 13/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F   AR  SF+ A E+LH++  +ISRQI+  E  +G  +F RH + + LT++G 
Sbjct: 8   FPALRAFEAAARHESFSAAGEELHVTHGAISRQIAAFEAWLGQPVFRRHGKRVKLTDEGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +  +     +L+E+       LRI          L   L  F    P++++
Sbjct: 68  RYLATIEAAFDSIARATDQLRETGTAR--VLRINALPTFAMKWLLPRLSRFQREAPNVEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N  +  S+D  D AIR R P +  +    + +   +    +P  LK      S  
Sbjct: 126 KLSTSNAPLG-SLDGFDVAIR-RGPGRWPNCTSGRFLDESVIPVCSPALLKRT-PIASAD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+          E   W A    P+   +      + +   +Q  V G G+AL 
Sbjct: 183 DLARHVLLHSDTRPDAWRE---WFAAAGAPMKGRKKQSF--DHFYLALQAAVDGLGVALG 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  ++ D   +  LV  +      + + ++  P    +   +  F  ++  +A+
Sbjct: 238 PLPLIADELASGRLVTPLPGPRIATLSYWWIAPRETASNALVGRFCAWLDAQAQ 291


>gi|209518554|ref|ZP_03267374.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
 gi|209501004|gb|EEA01040.1| transcriptional regulator, LysR family [Burkholderia sp. H160]
          Length = 302

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 123/298 (41%), Gaps = 13/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LR F   AR  S T AAE+LH++  ++SR I  LE  +G+ LF R  R + LT+ G+
Sbjct: 8   LQTLRAFEATARLLSMTLAAEELHVTHGAVSRHIKTLENHLGVPLFRRLTRRIVLTDAGA 67

Query: 65  KLH-RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + H  V   +       +      ++       I+T++      L   L  F  ++P++ 
Sbjct: 68  EFHFAVARLLGELTREAESLRGHDNIASM---TISTSVSFASKWLAPRLHRFKAIHPELD 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L + ++++D+     D A+R     +   +   +++   +    +P Y +      + 
Sbjct: 125 VHLDVTDRNVDLDDGQVDAAVRYGGG-RYPRVQSERILEETVTPVCSPSYREEVGGLTNP 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +  L+    ++    + F + A +DR     R      +     ++  + G G+AL
Sbjct: 184 AGLARCTLLHEDRMLANWEQWFAY-ADLDRS---RRSRGPAYSHGSMAIEAAIRGEGVAL 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
               +V D+     LV    D+           Y    ++  K+ A R+++  + R +
Sbjct: 240 GRSALVGDDIAAGRLVAPFPDIRLKVERGYDLVYRTGNRDHPKVCALRDWLAAEVRRF 297


>gi|300310278|ref|YP_003774370.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073063|gb|ADJ62462.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 123/298 (41%), Gaps = 9/298 (3%)

Query: 2   SFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           + D   ++ +F  V   G+F+ AA +L L+ SS+S+ IS LE  +G  L +R  R L+LT
Sbjct: 5   AMDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAMLGTTLLHRTTRKLSLT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G   +   S +       +   +    +  G+LRIA +  +    L   L +F+  +P
Sbjct: 65  EAGHSFYANCSRIVDLASEARQLTESLHKELLGELRIAASSFMASEYLVPALDDFIRAHP 124

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I + +++ +ID+     D A+R+ K    + +    L ++     A+P YL+     
Sbjct: 125 KLRINIDVNDHNIDLMDKSVDLALRVGKTSSENDVY---LASLPAVLCASPAYLRAHAPI 181

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L +H+ + F         + +      +         +  N   S+ +  + G G
Sbjct: 182 RHPEDLPQHDFLFF--TPHGSSVEVSLKNRGGQCAQLHLTPRVSANHARSLRRLALQGHG 239

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +A L    V+++     L  ++ D     +  +           K+      +    R
Sbjct: 240 VARLLACKVQEDLDAGRLEVVLPDWELDVYCAFLTTKYRESPPQKIVKCIEHLEAYFR 297


>gi|220921707|ref|YP_002497008.1| LysR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219946313|gb|ACL56705.1| transcriptional regulator, LysR family [Methylobacterium nodulans
           ORS 2060]
          Length = 321

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 118/288 (40%), Gaps = 11/288 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              + +F  VA+  SF+ AA  L +  SS+SR+I+  E  +G++L  R  R L LT  G 
Sbjct: 7   LRDMALFVEVAKRKSFSQAAAALDVPISSLSRRITQFEASIGLRLLDRTTRKLVLTPYGE 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQ-NLLQGNLKEFLLLYPDIQ 123
             +     +  + +    +L   +  PSG LRI+   +      L   +  FL  +  ++
Sbjct: 67  AYYEQAIRLVEEAQRCFDDLVAQARGPSGLLRISAPPEAWALRHLPDVIAAFLRTHEHVR 126

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I + L     D+  +  D AI + +P +++ +I R +  +    +AAP YL     P   
Sbjct: 127 IHVDLRMPGSDLMSEGCDLAIVMEEPRETA-VIARPIGQLSTGLFAAPSYLARAGAPRHP 185

Query: 184 QELD--KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +L   +H L+         +     LA     +       +  NS     ++   G G+
Sbjct: 186 DDLAHQQHTLLVAASGSTPLV-----LARAGESVTVTAGGAVSCNSLPLAQRFAAAGHGL 240

Query: 242 ALLPDYIVKDN-PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            LLP+       P L R++ D   P   V       L    + +AF +
Sbjct: 241 VLLPEIDAAAEMPALQRVLPDWSGPPVPVAIVTTSRL-IPARARAFID 287


>gi|307130467|ref|YP_003882483.1| transcriptional regulator [Dickeya dadantii 3937]
 gi|306527996|gb|ADM97926.1| Transcriptional regulator [Dickeya dadantii 3937]
          Length = 306

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 120/291 (41%), Gaps = 12/291 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               ++ F  VA + S   AAE+L+++ S++S QI+ LE  +  KLF R+ +G+TLTE G
Sbjct: 13  SLRNIQAFLEVANTQSINVAAEKLNITASAVSHQIATLEKFLNKKLFIRNGKGVTLTEHG 72

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R  S     +     ++   S      LR+ ++   G   L   L +F  L+PDI 
Sbjct: 73  EIYLREVSGAISIIGRATDKMINESSNEI--LRVHSSPSFGMIWLMRRLGKFRTLHPDIT 130

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L    +++  + D  D  IR   P   +      +    +   A+P Y+         
Sbjct: 131 INLTCSYENLQFARDNIDIDIRHGIPDWDA-YRVMTIKNERLKVMASPEYISKN-PINHP 188

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +E+  HNLI     +        W +  D     P  + L  +      +   +G G+ L
Sbjct: 189 EEILNHNLIYSSTTLAN---WDKWFSYCDIKYARPGFN-LSFDRSYMSFEAARMGLGLIL 244

Query: 244 LPDYIVKD---NPNLVRIME-DVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               + ++   + +LV++   +   P    +   P   + T K+K F  ++
Sbjct: 245 ESSMMGEEFLKSGSLVQVFPREFEYPVNAHHIVMPHINERTHKVKVFIEWM 295


>gi|83943713|ref|ZP_00956171.1| probable transcriptional regulator [Sulfitobacter sp. EE-36]
 gi|83845393|gb|EAP83272.1| probable transcriptional regulator [Sulfitobacter sp. EE-36]
          Length = 313

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 118/295 (40%), Gaps = 14/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F    R  +F  AA++L ++Q ++++Q+ GLE  + ++LF R  RGL  TE+G 
Sbjct: 10  LNGLRAFAAAGRHLTFRAAADELGVTQGAVAQQVRGLEDHLNLRLFLREPRGLAFTEEGR 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H   +  + ++      L+ +       + I+ T       L   L  F   +P I +
Sbjct: 70  AYHIAIARAFDQMADATDALRTAPSH----VTISVTPTFASKWLIPRLAAFTQAHPGIDL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++    +      D  D A+R   P   +SL    L    + A  APH  +    P+   
Sbjct: 126 RITATERVSSFHADGIDLAVRQGNPPFGASLRADLLFEQQIVAVCAPHLAEALNTPMDAA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            + +  L+          + +            P    L+ N     +   + G GIAL 
Sbjct: 186 GIAEATLLH------DTHDLWPQFIKTVFGRDVPTARGLRFNQTTLSLDAALAGQGIALA 239

Query: 245 PDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             ++V+ +     LV+ +E  ++     Y   P     +G     R+++  +ARD
Sbjct: 240 NRFLVQRDLRAKRLVQPIEGALSGGSGFYLLSPRQGSPSGAAHV-RDWLLGRARD 293


>gi|149911306|ref|ZP_01899927.1| LysR-family transcriptional regulator [Moritella sp. PE36]
 gi|149805621|gb|EDM65623.1| LysR-family transcriptional regulator [Moritella sp. PE36]
          Length = 301

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D+  LR+F +VA  GSF  AA+ L +  S++SR IS LE ++ ++L  R  R + LTE
Sbjct: 3   NIDFTSLRIFSLVADKGSFIGAAKALQMPSSNVSRTISQLEAKLQVRLIERSTRHMRLTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L+  +  +   L   + E+  +  +  G LR+    ++G  LL  ++ +F L YP+
Sbjct: 63  SGALLYSRSGALLDALAQIESEITSNKTQLKGPLRLCIPSEIGPKLLGDSIIDFALKYPE 122

Query: 122 IQIQLILD-NKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           + I    +      +  D     I  R  +  S  I +KL        AAP  +K   +P
Sbjct: 123 VSINCTTNLAGFESLIEDIDIAIIITRGELPDSEYIAQKLGEYPCCIVAAPKVIKQWGKP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +I +      IT    +    + + ++            S  +VNS     +  + G G
Sbjct: 183 SNISDFSALPCITTATAL--QGKAWQFIKDSGEFHHISVSSNFKVNSGEMAFKAALSGIG 240

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            A+L  +       + +L+ +          +Y  Y   +    K + F +F+  
Sbjct: 241 FAILSRHACDQHIKDGSLIELNFASDAAPLNLYAVYSHRIFLPEKFRVFIDFLKA 295


>gi|170736360|ref|YP_001777620.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818548|gb|ACA93130.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 309

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 129/299 (43%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F  V  SGSF  AA +L +++S++++ ++ LE  +G +L  R  R L LT
Sbjct: 1   MDERLRGVAEFVDVVESGSFAAAALRLGMTRSAVAKIVARLELRLGARLLQRTTRQLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +     +  +L   +  L     +P+G++R++  +  G+  +   ++  +  +P
Sbjct: 61  DEGLVYYEQCRRLLAELGEAEAALDAGRREPAGRVRVSVPVLFGRQCVAPVVRRLVERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I +   ++  D+  D  D A+R+ +   +++L+ RKL    M   A+P YL     P
Sbjct: 121 RLEIDMSFSDRVADLVNDGFDLAVRIGELADTNALVGRKLGVQRMGICASPAYLARHGRP 180

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             + EL  H  I +   G   P  +   +      R  G  R   LQ  +  +     + 
Sbjct: 181 SGLDELASHVGIAYSRGGQPTPWRVIGADGAVHDHRAAGRLRFDDLQAIADAAAAGAGLA 240

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 LP +++     +  L  +M+        V+   P A     K++A  + +  +
Sbjct: 241 -----WLPCWLMAPYLHDGRLALVMDSNSVSGAEVFAVRPAARHVPSKVRAVVDALVDE 294


>gi|241764651|ref|ZP_04762664.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241365871|gb|EER60514.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 289

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 122/298 (40%), Gaps = 16/298 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR F V AR  + T AA +L++SQ+++S+ I  LE  +G  LF R  RGL LT
Sbjct: 1   MHLPLNALRAFEVAARHLNLTRAASELNVSQTAVSQHIRNLEERLGQPLFRRLPRGLALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G  L     E + ++     +  +S  +P   L +          L   L+EF    P
Sbjct: 61  DEGRALLPALEESFGRISAALEQFSQS--RPREVLTVGAVGTFTVGWLLPRLREFQQACP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + ++L+  N  +DI+ +  D AIR        +     L+   +     P      R P
Sbjct: 119 FVDLRLLTHNNRVDIAGEGLDYAIRFGDGAWHGT-EAELLMPAPLSVMCTPELAARLRVP 177

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L    L+       +  E  +W A        P +  +  +S L++ +    G+G
Sbjct: 178 ---ADLAHQPLL----RSYRADEWEDWFAAAGVRC--PVVRGVVFDSSLTMAEAAAQGAG 228

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +ALLP  +      +  L R          + +    ++   T  + AFR ++ L  +
Sbjct: 229 VALLPVCMFTRELQHGRLARPFA-AELHQGSYWLTRLKSRPPTAAMAAFRGWLVLATQ 285


>gi|90412441|ref|ZP_01220445.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90326703|gb|EAS43102.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 294

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 127/298 (42%), Gaps = 14/298 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            DK+  F  V R+GS + AA + ++S S+ SR +  LE + G+ L  R  R LT T  G 
Sbjct: 2   LDKMAFFVYVVRTGSISAAARKFNISVSAGSRWLQDLEQKFGMPLHRRSNRLLTPTPAGQ 61

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           KL    S +    E    ++QE      G + I  T     + L   + E+L+  PD+  
Sbjct: 62  KLFDDFSPMVDNSEHLCRQMQEFQQHDKGHIDIVCTPVYANHYLMDMISEYLITNPDVTF 121

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-----SSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            L +    +D + +  D  I      Q        L++R+++       A+ HYL     
Sbjct: 122 NLNITPWALDHAAES-DLTISANASYQGYREHDLHLVRREIMQSPFRVVASQHYLDRQPA 180

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLG 238
           P    +L  H  +    L        +W+ T +      ++   L+VN    ++Q    G
Sbjct: 181 PQKPSDLTLHQCLFATTLTGSN----DWIFTQNGESQIIKVPKSLEVNDSDLLLQGVKKG 236

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +GIA LP ++V+   ++  L+ +++D  T  +++   Y      +     F+ F+  +
Sbjct: 237 AGIAYLPAFLVEPEIESGQLISLLDDFDTSVWSLNLYYQPPATASAVAIHFKEFLLKQ 294


>gi|239996068|ref|ZP_04716592.1| DNA-binding transcriptional activator GcvA [Alteromonas macleodii
           ATCC 27126]
          Length = 300

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 123/291 (42%), Gaps = 11/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  + +KLF R  R L LTE+G 
Sbjct: 8   LNALKSFEAAARHLSFTKAADELFVTQAAVSHQIKALEDFLSMKLFLRRNRTLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +++  L+     L        G + +A         L   + +F L +PDI +
Sbjct: 68  AYFLELKDIFKNLQDATERLLAKGS--KGAITVAMPPSFASQWLVPRIHKFSLAHPDIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   + D     D  D AI   K  + + L   +L    +    +P   +  +   S+ 
Sbjct: 126 RIKAVDFDEGFLEDDVDVAIYYGKG-RWAGLQADQLHREFLTPLCSPMLFQGPKPLSSLS 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   DL     +  NWL  V           +  +  + ++Q   LG GIAL 
Sbjct: 185 DLRHHVLLH--DLSRTAWK--NWLKHVGVVGVNVNQGPV-FSHSMLVLQAAALGQGIALG 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              + +   +   LV   E+ +      Y    E+    GK+ AFR++I  
Sbjct: 240 NTVLARPEIEAGRLVMPFEERVESRDAFYLVCEESQAELGKIAAFRDWILA 290


>gi|296162718|ref|ZP_06845503.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gi|295887034|gb|EFG66867.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 292

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 125/293 (42%), Gaps = 16/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G 
Sbjct: 7   LNALRAFESSARHLSFTRAALELNVTQAAVSQQVRTLEERLGTALFKRLPRGLAMTDEGL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L  V ++ + ++E    + +         L +          L   LK F   +P +++
Sbjct: 67  ALRPVLTDAFDRIEAVLKQFEGGHFHE--VLTVGVVGTFAVGWLMPRLKSFRDAHPFVEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+ +N  +D++ +  D AIR        SL   +L+   +     P       +P   +
Sbjct: 125 RLLTNNNLVDLATEGLDFAIRFGDGTWPGSL-ATRLLDAPLALLCTPEIAARLSKP---E 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  +  +W A    P    R      +S   +++  + G+GIAL 
Sbjct: 181 DLANETLL----RSYRADDWISWFAAAGIPPRPIRGPVF--DSSRLMVEAAMQGAGIALA 234

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +         LV   E V   + + +  + +    T  +  F  +I  +A
Sbjct: 235 PALMFDHEINTGRLVHPFE-VEVHAGSYWLTWLKGKPITPAMLLFNRWIIKEA 286


>gi|304409755|ref|ZP_07391375.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|307304111|ref|ZP_07583864.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
 gi|304352273|gb|EFM16671.1| transcriptional regulator, LysR family [Shewanella baltica OS183]
 gi|306913009|gb|EFN43432.1| transcriptional regulator, LysR family [Shewanella baltica BA175]
          Length = 295

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 15/298 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S T A+++LH++  ++S+QI  LE  +G  LF R  + ++LT++ +
Sbjct: 8   LNSLRAFEAAARLQSMTLASKELHVTHGAVSKQIRVLEDYLGFALFVRLHKKVSLTDEAN 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L +   +L+    KP   L I     L  N L   +++F   +P + +
Sbjct: 68  RYLPHVQAALQTLSSATSDLRRQPSKPQ-TLAINVLPSLTINWLIPRMEQFKSRHPHLYV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L + +  +D S    D AIR    I   ++ I  KL+   +    AP       +  +I
Sbjct: 127 DLSIGDFAVDFSQGRYDIAIRSSTVIPKGANYI--KLMDEDLCLVCAPSL---APKLQNI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++  H  +      P+  E   W   V   + + +     V  +  + Q    G G AL
Sbjct: 182 EDI-NHVTLLKHTTRPELWEY--WAEKVGLTLTQAQ--TFGVEHFYMLSQAAASGMGAAL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +P + ++D   N +LV   +   T  +  Y   P++     K +AF +++      ++
Sbjct: 237 IPRFFIEDQLANGSLVIPFDAPFTSPYRYYLLTPKSPSLPLKAQAFIDWLLEVFAPYR 294


>gi|172062517|ref|YP_001810168.1| LysR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995034|gb|ACB65952.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 308

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 120/294 (40%), Gaps = 10/294 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+   +  S S   AA  L L+  +++ ++  +E  + ++L  R  +G+ LT++
Sbjct: 2   LDLEDLRLVRAIGASRSLASAARLLDLTPPAVTIRLQRMEARLDVRLAVRQPKGIALTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++ T E+  ++E   + +        G LR+      G+  +   +++    +P +
Sbjct: 62  GQRLYQETVEILERVEALPVNISGDHGDVQGTLRVVAPFGFGRKYVARIVRDVQRAHPKL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L L    +  S   AD  + +   ++SSS I   L        A+P Y +   E   
Sbjct: 122 EISLHLSESPLG-SASGADVVVHVG-TLKSSSWIGYPLAPNERFLCASPGYARRIGELNH 179

Query: 183 IQELDKHNLITFGDL---IPKCM--EDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             +L +++ +   +    +P+    +  +      R         L  N    I  + + 
Sbjct: 180 PSDLARYDCLCLRENDEDVPRWHFSQPGDNKGEARRTAVIRVTGALSSNDGTVITDWALA 239

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G GI    ++ V     N  LVR++ D   P   V    P     + + + F +
Sbjct: 240 GLGIVERSEWDVAPLLANGKLVRLLPDWHLPPAPVTALLPSRTGRSARQRVFLD 293


>gi|121606794|ref|YP_984123.1| LysR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595763|gb|ABM39202.1| transcriptional regulator, LysR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 312

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 9/290 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L +F  VA++ SF+  A +  +  SS++RQI  LE ++ + LF R  R L +T+ G  
Sbjct: 8   ENLSMFVDVAQARSFSVVARRQGMVASSVARQIDALEQDLKVALFTRSTRALVMTDAGQL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L     ++   +   + E+     K  G LR++     G+  +  +L      +PD++++
Sbjct: 68  LFDRAVKLLSDMTEVRGEVVSLEQKVQGLLRVSCVPAFGRRHVVPHLGSLFEKHPDLRVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L  + +D  ++  D  IR+  P   SS+I +++        A+P YL+    P    E
Sbjct: 128 LELTERVVDAVLERFDLVIRVG-PQPDSSMISQRIGNQRYIVGASPAYLERHGHPTHFDE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H LI              W   V      P     + +   +       G GIAL+P
Sbjct: 187 LARHRLI----DRQHNTAARGWRELVGHNGLLPAQFAFECDDCDARRLSAAQGLGIALMP 242

Query: 246 DYIVKDN---PNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           ++ + ++     LV + +  +     +  F    A +   K +AF   + 
Sbjct: 243 NWAIGEDLAAGRLVELELAGLAAQPVSGIFLMRAAPRANSKTRAFTQHLL 292


>gi|311104158|ref|YP_003977011.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758847|gb|ADP14296.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           32 [Achromobacter xylosoxidans A8]
          Length = 322

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 70/312 (22%), Positives = 125/312 (40%), Gaps = 26/312 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VA+  SF+ AA  L++  S++SR+I+ LE  +G++L  R+ R L LTE G+
Sbjct: 8   LNDIALFVEVAKRKSFSLAARALNMPTSTLSRRINELERAIGLRLINRNTRRLDLTEAGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R    +  +      +LQ  S  PSG LR++    L   LL   + +F   YP+++ 
Sbjct: 68  AYMRRCQGLIDEARLAHEQLQSLSGGPSGNLRVSMPYSLAIWLLPETINDFTDRYPEVEC 127

Query: 125 QLILDNKDI-DISMDYADCAIRLRKPIQSS-----------------SLIQRKLVTIHMH 166
           +  L      D      D  +R                           + ++LV++   
Sbjct: 128 EFDLSMMTASDAQGTPFDIVLRFGSNADYPLATAGAADLNGNRGLHGGAVVQELVSLDNF 187

Query: 167 AYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN 226
            YA+  YL+   EP +  +L +H  +                A  +R    P    L  N
Sbjct: 188 LYASDRYLERHGEPKTPADLTQHQCLRTTIDEAHSHWTLRRGAVSER---VPVSGHLAAN 244

Query: 227 SYLSIMQYCVLGSGIALLPDYIVK----DNPNLVRIMEDVITPSFTVYFCYPEALKNTGK 282
           +         L   I  +P  +      +  +L R++        +++  YP +++   K
Sbjct: 245 NMSIAGTLAGLDLAITRMPHCLALEPIIERNSLKRVLPGWSVDPISIFVVYPSSIQ-PAK 303

Query: 283 LKAFRNFIFLKA 294
            +AF +FI  K 
Sbjct: 304 TRAFMDFIRPKL 315


>gi|317402279|gb|EFV82860.1| LysR-family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 319

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 132/313 (42%), Gaps = 28/313 (8%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VA+  SF+ AA  L++  S++SR+I+ LE  +G++L  R+ R L LTE G+
Sbjct: 8   LNDIALFVEVAKRKSFSLAARALNMPTSTLSRRINELERAIGLRLINRNTRRLDLTEAGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +  +      +LQ  S  PSG LR++    L   LL   +K+F   YP+++ 
Sbjct: 68  AYMSRCQGLIDEARLAHEQLQALSGGPSGNLRVSMPYSLAIWLLPETIKDFTDRYPEVEC 127

Query: 125 QLILDNKDI-DISMDYADCAIRLRKP-----------------IQSSSLIQRKLVTIHMH 166
           +  L      D      D  +R  +                   +S   + +KLV++  +
Sbjct: 128 EFDLSMMTASDAQGTPFDIVLRFGRDGDYPSAAADNGNGAAPVPRSDGAVVQKLVSLDNY 187

Query: 167 AYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVN 226
            YA+  YL+   EP +  +L +H  +            +  L         P    L  N
Sbjct: 188 LYASDRYLERFGEPKTPSDLMQHQCL---RTTIDDAHSYWTLHNGKVTEQVPVSGHLAAN 244

Query: 227 SYLSIMQYCVLGSGIALLP-----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTG 281
           +      +  L   I  +P     D I+K N +L R++        ++Y  YP +++   
Sbjct: 245 NMSIAGTFAGLDLAITRMPHCQALDPIIKRN-SLRRVLPGWSVDPISIYVVYPSSIQ-PA 302

Query: 282 KLKAFRNFIFLKA 294
           K +AF +FI  K 
Sbjct: 303 KTRAFMDFIRPKL 315


>gi|167579499|ref|ZP_02372373.1| LysR family regulatory protein [Burkholderia thailandensis TXDOH]
          Length = 293

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 124/294 (42%), Gaps = 13/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F   AR  SF+ A E+LH++  +ISRQI+  E  +G  +F+RH + + LTE+G 
Sbjct: 8   FPALRAFEAAARHESFSAAGEELHVTHGAISRQIAAFEAWLGKPVFHRHGKRVRLTEEGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +  +     +L+E+       LRI          L   L  F    P++++
Sbjct: 68  RYLATVEAAFDSIARATGQLRETGAAR--VLRINALPTFAMKWLLPRLSRFQREVPNVEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N  +  S+D  D AIR R P +       + +   +    +P  LK      S  
Sbjct: 126 KLSTSNAPLG-SLDGFDVAIR-RGPGRWPGCTSGRFLDESVIPVCSPALLKRT-PIASAD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+   D  P    +  W A    P+   +      + +   +Q  V G G+AL 
Sbjct: 183 DLARHVLLH-SDTRPNAWRE--WFAAACAPMKGRKKQSF--DHFYLALQAAVDGLGVALG 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  ++ D   +  LV  +      + + ++  P    +   +  F  ++  +A+
Sbjct: 238 PLPLIADELASGRLVTPLPGPRIATRSYWWIAPRETASDALVGRFCAWLDAQAQ 291


>gi|320325528|gb|EFW81590.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 328

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 131/289 (45%), Gaps = 11/289 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           + VF  V  SGSF+ A   L LS S++SRQI  LE  + + L  R  R L +TE G  + 
Sbjct: 14  MLVFRQVVVSGSFSGAGRTLGLSPSAVSRQIDRLERILNVALVTRSTRNLFITESGQDVF 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V SE+    ++    ++ + V+P G LR+   + +G+ LL  ++ EFL +YP I++ L 
Sbjct: 74  NVASEIASATDSLMGRIEAAMVEPEGLLRVTAPVTIGKILLSSSIAEFLRVYPKIKVDLN 133

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  +DI  +  D ++R+        ++ RKL  +     A    + +   P   +++ 
Sbjct: 134 FTDNIVDIYKEKFDLSVRITSTPPHD-MVARKLFDVEYLLVATTGEV-SFEIPSHPEDIS 191

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
              +IT  D        FN     D          L  N+  +++     G+G+ +LP++
Sbjct: 192 STPMITPSDSFFGEEMTFN---HTDYSYTVRSTPRLMANNSETLLGAIFSGTGVGVLPNF 248

Query: 248 IV---KDNPNLVRIMEDVI---TPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +     ++  L  I+ +         +V+F    +   + K +A+  ++
Sbjct: 249 LAIPLIESGQLRSILPEWQINNVTPSSVFFLSHPSKMISAKARAYIEYL 297


>gi|239831536|ref|ZP_04679865.1| HTH-type transcriptional activator ampR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823803|gb|EEQ95371.1| HTH-type transcriptional activator ampR [Ochrobactrum intermedium
           LMG 3301]
          Length = 350

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 122/295 (41%), Gaps = 12/295 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               + LR F   AR  SFT AA +L ++Q+++S Q+  LET + + LF R  RGL LT 
Sbjct: 64  HLPLNSLRAFEASARHLSFTKAAIELCVTQAAVSHQVKSLETRLNVTLFERLPRGLMLTS 123

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L     + + ++  T    +    +    LR+     L    L   L +F   YP 
Sbjct: 124 EGETLLPTLKDAFDRIAGTLERFEAGHYREI--LRVGAVGTLAVGWLLPRLPDFQKSYPF 181

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L  +N  +DI+ +  D AIR         +   +L+   +     P      RE  
Sbjct: 182 IDLRLSTNNNRVDIAAEGLDYAIRFGSGAWH-GIDATRLLEAPLSPLCIPEL---ARELR 237

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L +H L+       +  E   W          P    +  +S L++M+  + G+GI
Sbjct: 238 TPADLARHTLL----RSYRADEWTQWFLAAGVTGDMPLPRSIMFDSSLAMMEAAMQGAGI 293

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL P  +         I++   T     + +    ++   T  + AFR ++   A
Sbjct: 294 ALAPPLMFSRQLLSETIVQPFETTVTMGSYWLTRLQSRAGTEAMSAFRGWLTDAA 348


>gi|83716438|ref|YP_438448.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650263|gb|ABC34327.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 298

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 123/298 (41%), Gaps = 22/298 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA ++ ++Q ++++Q+  LE  +G++LF R  RGL LT  G 
Sbjct: 12  LNALRAFEVSARHLNFRAAAGEIGVTQGAVAQQVRHLEDTLGVRLFERLPRGLALTADGL 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +PD+ I
Sbjct: 72  AYFADVRRALNLIGDATDRLAKRRS----SVTISTTPSFASRWLIPRLASFGDEHPDVDI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + +HA  +P  L         +
Sbjct: 128 RVIADSQFATFQGDGVDLAIRYGKPPFGKGLVARLLFPVDIHAVCSPALLAPSG--ARAR 185

Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L    L+    DL P+ +      A VD   G       + N     +   + G G+AL
Sbjct: 186 DLAGQVLLHDAHDLWPEFLAALPERAAVDPAKGP------RFNQSSLAIDAAIAGHGVAL 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT---GKLKAFRNFIFLKAR 295
             D +V  +     L R+ +  +  S   Y  YP   +      K +A   ++  +AR
Sbjct: 240 ASDQLVARDIEAGRLRRLFDFALPLSIGYYIVYPNEPRRPDDIAKTEA---WLIREAR 294


>gi|325276028|ref|ZP_08141845.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324098839|gb|EGB96868.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 317

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 13/297 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++L +F  V +SGSF+ AA +  L+ S+++R+I  LE  VG +LF R    +  T  G  
Sbjct: 8   EQLSLFLDVLQSGSFSAAARRYPLTPSAVARRIDALEAAVGSRLFTRSTHAVRATPAGHA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI      G+  L   + +FLL YP + + 
Sbjct: 68  FAERAKRIIEELRLARAEAVSLSNAPEGLIRIDAPAAFGRRHLAPAIADFLLAYPGLDVH 127

Query: 126 LILDNKDIDI---SMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L +  +D+    +   D  +R   P+  + L+   L  +   A A+P YL +   P  
Sbjct: 128 LRLIDSFVDLHGSHLGEVDLVLRAG-PLADTRLVATPLAYMVRIACASPTYLASRGMPSC 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H+ + +  L P     F         +  P    +  N+  +++   + G GIA
Sbjct: 187 PSELPGHDGLDWDGLAPPYAWRFEVAGQT--RLYRPARMRMAANNAETLLFGALAGLGIA 244

Query: 243 LLPDYIVKD---NPNLVRIMEDVITP---SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP +++ +      LV +  D   P   S  +Y    E   N+ + +    F+  +
Sbjct: 245 HLPTWLISEYLLRGELVPLFCDAGLPQAESSGIYALRLEHETNS-RSRLLLEFLKSR 300


>gi|78061264|ref|YP_371172.1| LysR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969149|gb|ABB10528.1| transcriptional regulator, LysR family [Burkholderia sp. 383]
          Length = 319

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 129/287 (44%), Gaps = 7/287 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S +WD  RVF  V R+G+   AA  L + Q+++ R+++ LE  +G KLF + + G  +T
Sbjct: 27  LSMNWDDARVFLAVHRTGTLREAAAVLDVDQATVGRRLTALEKALGAKLFLKTSSGYVVT 86

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G    +    +       +  +  S  +  G++R+ TT  L  + +   ++      P
Sbjct: 87  QAGEHSLQAAEAMEQAASDFERRVHGSDDRLEGEVRVTTTDSLAMDFVVPAIRSLRRKCP 146

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + L    + ++++   AD AIR   P ++  L++RKL    +  +A+  YL    EP
Sbjct: 147 AIHVILTTSVQVLNLTRRDADLAIRTVMP-ENPDLVRRKLSEWEVGLFASREYLDAHGEP 205

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
                 + H+L+ +   I     D     T+     E      QV+S L +      G G
Sbjct: 206 AIGAAFEGHDLVVYQPAITSNQGD-----TLCGESMERGRIAAQVSSSLMLATAIRSGIG 260

Query: 241 IALLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAF 286
           I  LP Y+ + + +LVRI  D      + V+      L  T +++A 
Sbjct: 261 IGELPVYMAQGDDSLVRIWPDKSRAAPYQVWLVSHTDLNRTARVRAV 307


>gi|309790301|ref|ZP_07684868.1| LysR substrate-binding [Oscillochloris trichoides DG6]
 gi|308227635|gb|EFO81296.1| LysR substrate-binding [Oscillochloris trichoides DG6]
          Length = 292

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 73/296 (24%), Positives = 121/296 (40%), Gaps = 8/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   LR F  VAR    T AA +LH++Q ++S+QIS LE E+G+ LF R  R + LTE 
Sbjct: 1   MELRHLRYFEAVARHSHVTRAAAELHIAQPALSKQISQLEHELGVALFDRVGRNVRLTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      V  ++E  + E+ E      G+  +     +G  LL   L  F   Y  I
Sbjct: 61  GEALLPHARAVMAQVEAARAEMAERIGLRKGRATVGAPPTVGNQLLPQALAIFNQRYSGI 120

Query: 123 QIQLILD--NKDIDISMDYA-DCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           +++L        +D+      D A+ +  P+   +L    L T  M       +    R 
Sbjct: 121 ELRLHEAGVQTLLDLLETGLTDVAV-VTLPVDDENLTVLPLFTEEMVIAVWRGHPLATRS 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
            +SI EL     +    L P+  E      +V    G      L      +++++   G 
Sbjct: 180 EVSISELANEPWV----LSPENYELREAALSVCERAGFTPRVVLDGGETDTLLRFVAAGL 235

Query: 240 GIALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIAL+P   V+   +LV +         ++   +      +   +A R F+  + +
Sbjct: 236 GIALVPRLAVQSVSDLVPLRVADQKLERSLGVVWRGDRVASPAARALREFLVEQLQ 291


>gi|241763978|ref|ZP_04762019.1| transcriptional regulator, MarR family [Acidovorax delafieldii 2AN]
 gi|241366729|gb|EER61181.1| transcriptional regulator, MarR family [Acidovorax delafieldii 2AN]
          Length = 307

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 130/297 (43%), Gaps = 9/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   L V   +  +G+ + AA  L ++++++S  +  LE  VG++L  R  R +  TE 
Sbjct: 1   MELTSLTVLVDILDAGNLSQAARNLKMTRANVSYHLHQLEKSVGVQLVRRTTRRVEPTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + +++   +  +        G++ ++     GQ ++   L +F  LYP I
Sbjct: 61  GLRLYAHGRAIQNEMLAARETIATLGQGLQGRVGLSVPSGYGQMVMSDWLIDFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +  +N+  D+  D  D AIR+  P    +L+ R L  +   A A+  Y +    P +
Sbjct: 121 VLDVRFENRVDDLIRDEVDIAIRV-MPEPPPTLVARDLGRVRYIACASRSYAQAHGLPPT 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L    LIT G +  +              + EP    L    +  + Q  + G G+ 
Sbjct: 180 LDALRTAPLITSGVVGKQLRLRGYRGDERQEVMLEP---TLISEHFPFLRQGILAGLGVG 236

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+PDY+V+D   + +++  +++     F   ++  Y      T  ++    ++  +A
Sbjct: 237 LVPDYVVQDAVASGDVLTTLDEWRLSIFGTQMFMLYMPDRHQTRAVRTCIEYLLGRA 293


>gi|170737161|ref|YP_001778421.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819349|gb|ACA93931.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 311

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 117/293 (39%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +  +GS + AA QLH +Q +ISR++  LE  +G++L  R    + LT  G 
Sbjct: 8   FELMETFVRIVEAGSLSAAAVQLHTTQPTISRRLQALENSLGMRLLQRTTHTMRLTVDGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +   E+       + +L+ +  +P G LR+A     GQ      L +FL  YP + +
Sbjct: 68  RCFKQAKELLASWAAFEADLRGAQEEPDGLLRVAVPHAFGQQRFVAPLAQFLRDYPRVSV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D      DCAI++ +P     ++  ++  +     AAP  L     P    
Sbjct: 128 EWLLQDEVRDFVGSGIDCAIQVGEP-TDPGVVAIRIAKVPRFVVAAPSVLNGADVPADPD 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     +         +   + +    R I       +   +  ++    +LG G  + 
Sbjct: 187 ALAALPWLALRTYYRNELTLTHAVTGDTRRIAI--RPRITTANLYALRSAALLGVGACVG 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +++  +     LV +  +       VY  YP A     +L  F   +    
Sbjct: 245 SSWMLAGHLARGELVHLAPEWQAAPLPVYLTYPHAQFYPSRLVRFVAMMREAV 297


>gi|116695938|ref|YP_841514.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530437|emb|CAJ96784.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 324

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 67/305 (21%), Positives = 132/305 (43%), Gaps = 13/305 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +FD + +R+F  +  S + T AAE+  +++S++SR++  LE  +G +L  R  R + LTE
Sbjct: 5   NFDLNLVRLFVTMVESRTLTAAAERSGMTRSNVSRRLKLLEQHLGAQLMRRTTRHVELTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +  +L++    +        G +RI     LG   L   L EF   YP 
Sbjct: 65  AGQLLYAHGLRMLDELQSANTSIDSLGQVVRGDVRIRLPTGLGHLYLTPLLLEFARNYPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++++++   D+     D A+++         + R++  +     A+  +L +     
Sbjct: 125 ISLRVVINDNIGDLIPAEVDVALKITSQPPDDH-VARRICDVGWCLCASASFLDSHGPIR 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           ++ +L++ ++I    L  +      WLA    P+       +Q   Y  + +  + G G+
Sbjct: 184 TVADLERCDMIAPASLGRR-FTLKVWLA--GTPMTLRVSPRIQSGDYPFLFESVMGGLGV 240

Query: 242 ALLPDYIV---KDNPNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFL---- 292
           ALLP Y V     +  +  ++ +         VY         T   +   +FI L    
Sbjct: 241 ALLPRYAVWRQLQSGQMREVLAECEAEGVGDSVYMLTAPNRYPTLATRTLMDFIRLHLER 300

Query: 293 KARDW 297
           +A +W
Sbjct: 301 QAENW 305


>gi|302187856|ref|ZP_07264529.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 315

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLGVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHVRMGCTEGFGSFFITPQLSHFLDSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N     
Sbjct: 131 ISLDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQAYLDNHPPIE 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I++ D +    E       +     +     L+  S ++     + G  +
Sbjct: 190 HKADLSEHVFISYVDDLAFSSELLYMSNLLPNAQAQ-----LRSTSVIAQYTAALQGRAL 244

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP ++   +P L+ ++ + +  +   +    E L+   ++    ++I  
Sbjct: 245 AILPCFLAAQDPRLLPVLTEEVNITRQFWMYCREDLRKLKRITLLWDYIRE 295


>gi|319764428|ref|YP_004128365.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|330826649|ref|YP_004389952.1| LysR family transcriptional regulator [Alicycliphilus denitrificans
           K601]
 gi|317118989|gb|ADV01478.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|329312021|gb|AEB86436.1| transcriptional regulator, LysR family [Alicycliphilus
           denitrificans K601]
          Length = 302

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 128/297 (43%), Gaps = 10/297 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  SG+ + AA +L ++++++S  ++ LE   G++L  R  R +  TE 
Sbjct: 1   MDLQSLTLLVEIIDSGNLSQAARKLKMTRANVSYHLTQLEKSAGVQLIRRSTRRVEPTEV 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     + +++   +  +        G++ I+     GQ ++   L EF  LYP I
Sbjct: 61  GLRLYEHGLAIRNEVLAARETVTSLGQGLLGRVGISVPSGYGQMVMSDWLIEFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  D   D  D  IR+  P    S+I R L  +   A A+  Y+     P +
Sbjct: 121 VLDVLFENR-ADHLRDEVDIVIRVI-PEPPLSVIARSLGPMRYVACASRAYVAEHGLPAT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           + EL    +IT G +  +              + EP    L    +  + Q  + G G+ 
Sbjct: 179 LYELRNSPVITAGVIGHQLRLSAYQGKERQEVLLEP---TLISEHFPFLRQGILAGLGVG 235

Query: 243 LLPDYIVKDNPNLVRI---MEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKA 294
           L+PDY+V+       +   +++     F   +Y  Y      T  ++   +F+  KA
Sbjct: 236 LVPDYVVQAEVASGEVLLALQEYRLSIFGSHMYLMYLPGRHQTRAVRTCIDFLMAKA 292


>gi|197337543|ref|YP_002158729.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
 gi|197314795|gb|ACH64244.1| transcriptional regulator, LysR family [Vibrio fischeri MJ11]
          Length = 299

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 129/303 (42%), Gaps = 16/303 (5%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGL-- 57
           M     + LR F   AR  SF+ AA++L+++ ++I +Q+  LE  +GI LF R   G+  
Sbjct: 1   MKLHHLNGLRAFEASARHLSFSLAAKELNVTPAAIGQQVKLLEEWLGISLFERRTSGVSR 60

Query: 58  -TLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFL 116
             LT++        +  +  L      L+ +   P   L +A +       L   + +F 
Sbjct: 61  LVLTKEALLGLPEITRGFEHLAQGLDLLKPTENSPI--LTVAVSPAFAAKWLLMRIDDFQ 118

Query: 117 LLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN 176
             YP+  ++L  + + +D   +  D  IR  K  Q   L    L+T  +    +P  L  
Sbjct: 119 TSYPEWDLRLDTNIRTVDYLTESIDVGIRYGKG-QWEGLEASLLMTESVFPVCSPELLNK 177

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRP--IGEPRISCLQVNSYLSIMQY 234
                 I+ + +  L+     +PK     +W A  ++           LQ+N+  S++Q 
Sbjct: 178 G--INGIESIAQFPLLH-DISLPKESGFPSWKAWFEQNGIFNVNTEKGLQINNSASVIQA 234

Query: 235 CVLGSGIALLPDYIVKDN---PNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFI 290
            + G GIAL    +V+D+     LV++  D+  T     Y  + +    + K+  F+ ++
Sbjct: 235 AINGQGIALGRSVLVQDDLDCGRLVQLFPDLESTTELAYYVVWKKKGIVSDKISVFKEWL 294

Query: 291 FLK 293
             +
Sbjct: 295 HQQ 297


>gi|27367016|ref|NP_762543.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27358584|gb|AAO07533.1|AE016810_36 Transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 295

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 137/301 (45%), Gaps = 17/301 (5%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   +  +  V   GSF  AA +++ + S+IS++I  LE ++G++L  R  R ++ TE
Sbjct: 1   MDWFQSVNSYIRVVEEGSFNAAARKMNTTSSAISKRIQWLEEKIGVQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  ++         ++   E +  ++ P+G L+I  T+ +G   L   L +FL  YPD
Sbjct: 61  AGALFYQRAKLQLDGWQSVLDETRSVNLSPAGLLKIGATLAVGSKFLVHYLDDFLEKYPD 120

Query: 122 IQIQLILD--NKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           I+IQL      +  ++S+   D  I R  + + S S     L       +AAP Y++   
Sbjct: 121 IKIQLFTTLPGQLPELSL---DLFISRELEQLNSLSFKATALFEHKATFFAAPSYIEKYG 177

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P + ++L  HN++ +G+   + ++  N      R             +  ++      G
Sbjct: 178 MPENAEQLVNHNILIWGEKPSRELKLNNGKRMTLR-------GNFSTTNPEALFHGAKRG 230

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GI L  + ++K+      LV ++ +V     TVY  YP+      + K F +++  + +
Sbjct: 231 MGILLSNNVMIKEELRTGALVPVLPNVHADEATVYAYYPKLDYQHTRTKLFLDYLKERLQ 290

Query: 296 D 296
            
Sbjct: 291 Q 291


>gi|171315922|ref|ZP_02905151.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171098925|gb|EDT43715.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 296

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 121/289 (41%), Gaps = 13/289 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF   AR  S+T AA++L LSQS+ISRQ+  LE ++G+ LF R  R + LTE G +  
Sbjct: 13  LLVFEAAARHESYTRAADELSLSQSAISRQVQTLEDQLGVPLFRREGRSVKLTEVGRRYF 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S    ++    ++   S    +G LR+AT    G   L  +L +F   +P + + L 
Sbjct: 73  VELSGALGRIRGATLQ-AMSHQAGAGTLRLATLPTFGSKWLLPHLHDFYAAHPGVTVHLH 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE-PLSIQEL 186
                ID   D  D AI +        L   +L    + A A+P      +    +    
Sbjct: 132 SRIGGIDFHTDDLDAAITVGAG-DWPGLHAHRLYNEFLIAIASPDAAGRRKACRRAPAWA 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS-CLQVNSYLSIMQYCVLGSGIALLP 245
               L+    +         W +       E RI    ++ S+  ++Q    G GI L+P
Sbjct: 191 VGQTLLG---VTSNQHAWAEWFSHFGLDHREMRIGPSFELTSH--LIQAVRAGMGIGLVP 245

Query: 246 DYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V+D      LV I  D IT   + Y  YP        L AFR ++ 
Sbjct: 246 KVLVEDELSRNELVSI-GDAITSQRSYYLVYPPENDTLPSLAAFREWLL 293


>gi|293608315|ref|ZP_06690618.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828888|gb|EFF87250.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 283

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 129/289 (44%), Gaps = 15/289 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ L  F V     S + AA +L +  +++SR+I+ LE  + +KL  R  R   LT  
Sbjct: 2   IDWENLHYFSVFTEEKSLSAAARKLGVDHATVSRRIAQLEQNLKLKLVDRRPRTYILTPD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +V + +  +  + +   Q    +  G + I+       +L+  +L +F   YP +
Sbjct: 62  GERLAQVVARMMEETFSIERLTQAGQQEVMGSVSISMPPLTAAHLIMPHLGKFYRHYPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++++ D   + +    AD A+R  +P +  +L+ RK+  I    YA  +YL +      
Sbjct: 122 KLRVLGDVHYVSLQHSEADIAVRFGRP-KDENLVARKVGEIPFGIYAGSNYLAS------ 174

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             + + +  I+         +       ++          +  N+     +      G+A
Sbjct: 175 -TDPENYEWISVEVGGVHGQKQQKLKERLNHKE-----PIMVTNNPELQWRAACGEIGLA 228

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +LPD++   + NLVR+ +D    S  ++    E L+++  ++A  +F+ 
Sbjct: 229 VLPDFLGAIS-NLVRLQDDYPM-SAEIWLVTHEDLRHSPAIRAVMDFLM 275


>gi|307726916|ref|YP_003910129.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587441|gb|ADN60838.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003]
          Length = 294

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 126/297 (42%), Gaps = 16/297 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L+++Q+++S+Q+  LE  +G  LF R  RGL +T++G 
Sbjct: 7   LNALRAFESSARHLSFTRAALELNVTQAAVSQQVRALEERLGTALFKRLPRGLAMTDEGL 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L  V ++ + ++E    + +         L +          L   L+ F   +P +++
Sbjct: 67  ALRPVLTDAFDRIEAVLKQFEGGHFHE--VLTVGVVGTFAVGWLMPRLRSFREAHPFVEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+ +N  +D++ +  D AIR        SL    L+   +     P   +    P    
Sbjct: 125 RLLTNNNLVDLATEGLDFAIRFGDGTWPGSL-ATCLLDAPLALLCTPEIAERLSMP---A 180

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  +  NW A     I    I     +S   +++  + G+GIAL 
Sbjct: 181 DLVGETLL----RSYRADDWSNWFAAAG--IAPRPIRGPVFDSSRLMVEAAMQGAGIALA 234

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           P  +     +   LV    D+   + + +  + +    T  +  F  ++  +A  ++
Sbjct: 235 PALMFGHEIETGRLVSPF-DIEVHAGSYWLTWLKGKPMTPAMLLFSQWLVKEAAAYR 290


>gi|86144474|ref|ZP_01062806.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
 gi|85837373|gb|EAQ55485.1| transcriptional regulator, LysR family protein [Vibrio sp. MED222]
          Length = 298

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 13/297 (4%)

Query: 3   FDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++++ LE  +G +L  R  R ++ TE
Sbjct: 1   MDWILNVKSYVKVVEEGSFNGAARKLNTTSSAISKRVNWLEERIGTQLLKRTTRSISQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    +     ++   E +  +  P+G L+I  TI +G   L   + +FL  YPD
Sbjct: 61  AGALFYLRAKDQLDNWQSIIDETRSVNQTPAGLLKIGATIAVGSKFLVQYMDDFLEKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I++QLI       +     D  I R  + + S S  +  L       YAAP YL     P
Sbjct: 121 IKVQLITT-TPGQLPELGLDLVISRELEQLNSLSFKKTPLFEHKASFYAAPSYLAKHGYP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           ++ Q+L++HN + +G+   +         T+ +             +  ++      G G
Sbjct: 180 INEQDLEQHNSLIWGERPIR-------EVTLTKGQRITLNGNFATTNPEALFHAAKRGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + L    ++K++     LV ++ ++      VY  YP+   +  + K F + +  + 
Sbjct: 233 VLLTIKAMIKEDLKQGTLVPVLPNITADEVMVYAYYPKLDYSHTRTKLFLDHLKDRL 289


>gi|84385265|ref|ZP_00988297.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
 gi|84379862|gb|EAP96713.1| transcriptional regulator, LysR family [Vibrio splendidus 12B01]
          Length = 298

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 130/297 (43%), Gaps = 13/297 (4%)

Query: 3   FDWD-KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +L+ + S+IS++++ LE  +G +L  R  R +  TE
Sbjct: 1   MDWILNVKSYVRVVEEGSFNGAARKLNTTSSAISKRVNWLEERIGTQLLKRTTRSINQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +    +     ++   E +  +  P+G L+I  TI +G   L   + +FL  YPD
Sbjct: 61  AGALFYLRAKDQLDNWQSIIDETRSVNQTPAGLLKIGATIAVGSKFLVQYMDDFLEKYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I++QLI       +     D  I R  + + S S  +  L       YAAP YL     P
Sbjct: 121 IKVQLITT-TPGQLPELGLDLVISRELEQLNSLSFKKTPLFEHKASFYAAPSYLAKHGYP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            + Q+L++HN + +G+   +         T+ +             +  ++      G G
Sbjct: 180 TNEQDLEQHNSLIWGERPTR-------EVTLTKGQRITLNGNFATTNPEALFHAAKRGMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           + L    ++K++     LV ++ ++      VY  YP+   +  + K F + +  + 
Sbjct: 233 VLLTIKAMIKEDLKQGTLVPVLPNITADEVMVYAYYPKLDYSHTRTKLFLDHLKDRL 289


>gi|237507641|ref|ZP_04520356.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
 gi|234999846|gb|EEP49270.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           MSHR346]
          Length = 309

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+ LF R  RGL LT  G 
Sbjct: 17  LNALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGVALFERLPRGLALTADGF 76

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +P + +
Sbjct: 77  AYFADVRRALNLIGDATDRLAKRRAN----VTISTTPSFASRWLIPRLASFGDEHPGVDL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + ++A  +P  L         +
Sbjct: 133 RVIADSQFATFQGDGVDLAIRYGKPPFGKGLVTRLLFPVDIYAVCSPSLLATPGALARAR 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+     +        +LA +   +        + N     +   + G G+AL 
Sbjct: 193 DLAGHALLHDAHDL-----WPEFLAALPERVATDPAKGPRFNQSSLAIDAAIAGHGVALA 247

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V  +     L R+ +  +  S   Y   P   +  G +     ++  +A+
Sbjct: 248 SDQLVARDIEAGRLRRLFDFALPLSVGYYIVRPSEPRRPGDIAQTEAWLIRQAQ 301


>gi|224824895|ref|ZP_03698001.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602566|gb|EEG08743.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 317

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 138/296 (46%), Gaps = 6/296 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             +  F   A+SGSF  AA  L +S +++S+ ++ LE  +G++L  R  R L LT +G  
Sbjct: 8   RAILSFVQAAQSGSFAAAARSLGISSAAVSKNVASLEQGLGVRLMNRTTRSLKLTAEGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                      L+     +    V P+G++RI+T+   G++ +   L   L  +P + ++
Sbjct: 68  FLEQARIALDALDAAVDTVAAQRVVPAGRVRISTSAAFGRDQVMPALPGLLERHPALSVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D++ +D+  +  D A+R    +  S+L+ R +  ++M   A+P YL     P + Q+
Sbjct: 128 VDFDDRRVDLVQEGYDLAVR-GGQLVDSALVSRLICRLNMVLIASPAYLARYGVPRTPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +H LI    L  +       LA       EP  + + V++  ++ Q  + G GIA + 
Sbjct: 187 LPQHRLIARRFLGGRLSPWCFRLADGSLDEREPAPAVITVSAPEALAQAALAGLGIAQVG 246

Query: 246 DYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK-ARD 296
            +    +    +L  ++ D   P ++ +   YP       +++A  +++    ARD
Sbjct: 247 IHHAWPHLRAGSLKVVLADCHHPGTYEMALQYPHRALLAPRVRATVDYLLEAFARD 302


>gi|190576463|ref|YP_001974308.1| putative LysR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014385|emb|CAQ48033.1| putative transcriptional regulator-LysR family [Stenotrophomonas
           maltophilia K279a]
          Length = 321

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 126/284 (44%), Gaps = 8/284 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +D L++F   A  GSF+ AA +  L    ++  ++ LE E+ ++LF R  R L LT +G+
Sbjct: 4   FDDLQLFVRTAALGSFSQAAREADLLPGQVAAAVARLERELDLRLFVRTTRSLRLTGEGA 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  EV   L   +  +Q    +  G L+++   D G+NLL   L  F   +P +++
Sbjct: 64  LYLPYAQEVLATLREGRARVQGEDAELHGTLQLSAPSDFGRNLLLPWLTAFRAAHPRLRL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT-IHMHAYAAPHYLKNCREPLSI 183
            L L ++  D+  D  D AIR+      +S +   L+        A+P YL+    P+ +
Sbjct: 124 HLRLSDEVADVFRDPVDVAIRIGH-FDDASYVALPLLEGNRRVLAASPDYLQRRGTPVRL 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            EL +H+ + +  L  +  + ++      R    P    L  +    + ++ V G GI  
Sbjct: 183 DELREHDCLVY-QLSGRAYDRWS-FEVDGRRTVIPVRGPLVCDDADVVRRWAVTGEGITY 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
                ++++     L +++ D +  S  +    P   + +  ++
Sbjct: 241 KSWLDLREDVLAGRL-QLLLDGVGSSIPLQLVCPHRKQFSPAVR 283


>gi|152986332|ref|YP_001346330.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961490|gb|ABR83515.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 296

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 122/284 (42%), Gaps = 7/284 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D   L VF  +A SGS +  AE L LS ++ S  +S LE  +G  L YR++R L+LT
Sbjct: 1   MIDDIRYLIVFARIAESGSISAGAEALGLSAATASLHLSRLERNLGCALLYRNSRKLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + GS+L      +    E   IE ++ +V     LRI+            +L  F+  +P
Sbjct: 61  QDGSRLLETARSMLELYEKGFIEFRQRAVSTRNSLRISMPAVFINGDFTRHLASFIEEHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D+ + +  D+   DI  D  D A R+   +  SSL  R L  +     A+P +L     P
Sbjct: 121 DLDLSVACDDSRHDIIADGIDIAFRIGD-LPDSSLKARHLFLLPRQVVASPAFLARQAPP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              ++L++   I         + +        +    PRI   +V+S  +  +   LG G
Sbjct: 180 EHPRDLERLEWIGLDMRPDSRVFEHAASGEQAQVRYTPRI---RVDSVEASCRLARLGVG 236

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTG 281
           +A  P Y+  +      L  ++ +       VY  +P  +  +G
Sbjct: 237 LAAPPTYLGDEPIRRGELRAVLPEWRLAPLKVYAVWPPNVPASG 280


>gi|34498007|ref|NP_902222.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34103862|gb|AAQ60222.1| probable transcriptional regulator LysR-family [Chromobacterium
           violaceum ATCC 12472]
          Length = 307

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 68/277 (24%), Positives = 120/277 (43%), Gaps = 12/277 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V    SF  AA QL  S SS +R +  LE E+G  L  R ++ + LT  G   +
Sbjct: 7   IRIFCAVVEQKSFVSAARQLGTSPSSATRALQALEEELGAMLLARSSKQVELTMAGEAYY 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               ++    +  + EL + +  P G LR +    LG+ LL   L      +P ++ +++
Sbjct: 67  PAARQMLDLQQQAEDELSQQAGAPRGLLRFSAPETLGRELLPAVLGRLADTHPGLRFEVL 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  ++   D  D +IR   P  SS LI   L     H YA+P Y+     P S  +L 
Sbjct: 127 YSDSTLEPIRDKLDFSIRGAFP-ASSELIGHPLWHYRRHLYASPDYVARHGAPQSPSDLP 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +H ++      P+ ++ +N+++  ++ I     +  + NS   ++     G GIA L D+
Sbjct: 186 QHRVVIH--TAPRVLKAWNFVSD-EQAISLNLNAWHRSNSGNGVLDAVRAGMGIARLGDW 242

Query: 248 IV---KDNPNLVRIMEDVITPSFT-----VYFCYPEA 276
           +         LVR+       S       ++  +   
Sbjct: 243 LAEPLAARGELVRLCPAFRIVSSHGGDPQMHAVFASR 279


>gi|262403989|ref|ZP_06080544.1| transcriptional regulator LysR family [Vibrio sp. RC586]
 gi|262349021|gb|EEY98159.1| transcriptional regulator LysR family [Vibrio sp. RC586]
          Length = 316

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 130/298 (43%), Gaps = 12/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +S   D L +F  V R GSF  AA+Q  +S S++SR+I  LE + G  L  R ++ L LT
Sbjct: 10  LSMKLDDLALFLTVVRCGSFALAAKQKSMSTSTLSRRIQQLEQDTGSILLIRSSKELVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G +L    ++++ ++E  Q + +++     G++ I+  +   ++ L     EF  L+P
Sbjct: 70  KEGEQLFHTYADLFTQIELKQDQTEQAKRDYRGEIVISAPVLPLRHQLTPLALEFSELHP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           ++ +++ + +     +    D  +R   P   S  + RKL        A+  +     E 
Sbjct: 130 NVTLRMQVASSLDYFTQKDLDIVLRFG-PQPESDWVARKLARNPSVLCASAVFAAKLSEN 188

Query: 181 L----SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                  ++L+   L++    +P             +       + L  +   +I+Q   
Sbjct: 189 QPSLAHPEQLNALPLLSLNHKLPWVFHH----RISGQKAQFIPTARLCSDELDTIVQATR 244

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            G GIA LP  +++   +   LV ++ +       VY  +P+      + +A  +++ 
Sbjct: 245 QGMGIARLPRGLMEPLLNEGQLVELLPEWEIEGADVYLIHPQRRFLPERTQALIDYMM 302


>gi|171317787|ref|ZP_02906968.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171097071|gb|EDT41926.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 307

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 120/296 (40%), Gaps = 15/296 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D + LR+   +  S S   AA  L L+  +++ ++  +E  + ++L  R  +G+ LT++
Sbjct: 2   LDLEDLRLVRAIGASRSLASAARLLDLTPPAVTIRLQRMEARLDVRLAVRQPKGIALTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L++   E+  ++E   + +        G LR+      G+  +   +++   ++P +
Sbjct: 62  GQRLYQEAVEILERVEALPVNISGDHGDVQGTLRVVAPFGFGRKYVARIVRDVQRMHPKL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +I L L    +  S   AD  + +   ++SSS I   L        A+P Y +       
Sbjct: 122 EISLHLSESPLG-SASGADVVVHVG-TLKSSSWIGYPLAPNERFLCASPGYARRIEALNH 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR-------ISCLQVNSYLSIMQYC 235
             +L +++ +   +      +   W  +     GEPR          L  N    I  + 
Sbjct: 180 PSDLARYDCLCLRE---NDEDVPRWHFSQPGDKGEPRRTTVIRVTGALSSNDGTVITDWA 236

Query: 236 VLGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           + G GI    ++ V     N  LVR++ D   P   V    P     + + + F +
Sbjct: 237 LAGLGIVERSEWDVAPLLANGKLVRLLPDWHLPPAPVTALLPSRTGRSARQRVFLD 292


>gi|53724656|ref|YP_101964.1| LysR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|67642437|ref|ZP_00441193.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|121599891|ref|YP_994123.1| LysR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124386133|ref|YP_001028220.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126450237|ref|YP_001081835.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|126450868|ref|YP_001081858.1| LysR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|167001156|ref|ZP_02266955.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
 gi|254176878|ref|ZP_04883535.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|254197175|ref|ZP_04903598.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|254203644|ref|ZP_04910004.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|254208619|ref|ZP_04914967.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|254360325|ref|ZP_04976595.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|52428079|gb|AAU48672.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           23344]
 gi|121228701|gb|ABM51219.1| transcriptional regulator, LysR family [Burkholderia mallei SAVP1]
 gi|124294153|gb|ABN03422.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10229]
 gi|126243107|gb|ABO06200.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|126243738|gb|ABO06831.1| transcriptional regulator, LysR family [Burkholderia mallei NCTC
           10247]
 gi|147745156|gb|EDK52236.1| transcriptional regulator, LysR family [Burkholderia mallei FMH]
 gi|147750495|gb|EDK57564.1| transcriptional regulator, LysR family [Burkholderia mallei JHU]
 gi|148029565|gb|EDK87470.1| transcriptional regulator, LysR family [Burkholderia mallei
           2002721280]
 gi|160697919|gb|EDP87889.1| transcriptional regulator, LysR family [Burkholderia mallei ATCC
           10399]
 gi|169653917|gb|EDS86610.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|238523587|gb|EEP87024.1| transcriptional regulator, LysR family [Burkholderia mallei GB8
           horse 4]
 gi|243062988|gb|EES45174.1| transcriptional regulator, LysR family [Burkholderia mallei PRL-20]
          Length = 322

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 127/300 (42%), Gaps = 12/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G 
Sbjct: 7   LSALETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I
Sbjct: 67  LYLATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +  +DI  +  D A+R+      S ++ + + +      A+P YL     P +  
Sbjct: 127 ELSLSDHYVDIVGEGFDLALRMGNYDLPSQIV-KPIGSNRGLLCASPGYLARRGRPTAPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +    P     + +     R   EP+   L  + Y   +   + G+G+   
Sbjct: 186 DLAQHDCVIYRH--PTLANTWTFERGGVRARLEPK-GPLVTDDYGLALAAALDGAGVLPC 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P + V D      LV ++ D    S +     +   YP + + + K++     +  +  D
Sbjct: 243 PQWSVVDALEAGRLVPLLVDWRFESASFGEDRICAAYPSSRRGSTKIRRLVERVQARLAD 302


>gi|293611202|ref|ZP_06693500.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826453|gb|EFF84820.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 293

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 138/298 (46%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L  F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLHFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L     ++    E   +++++      G++RI T    G   L   L EF + YP
Sbjct: 61  LEGMALVPRVEQM----EQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQYP 116

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL      
Sbjct: 117 LLTIDLIPVPKMIKLSHREADIVVSIDRPTSGPYIITR-LSDYCLKIYGSKNYLAQNPPI 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L +H  + + D +    E +         +     +  + +S L+       G+G
Sbjct: 176 RALEDLTQHRFVNYIDDLVYSPELY-----CLERLPLKLNANFRSSSILAQQIAVSAGAG 230

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +A+LP ++  D P L  ++E  +  + T +      L++  ++K   +++  +A  ++
Sbjct: 231 LAILPKFLADDKPELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWDYLRKQADKYQ 288


>gi|40068457|gb|AAR38855.1| LysR family transcriptional regulator [Pseudomonas agarici]
          Length = 261

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 108/226 (47%), Gaps = 2/226 (0%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D  + + +      +GSF+ A+ +L +   ++SR+++ LE  +G++L  R  R LTLTE
Sbjct: 1   MDRLEAMAILVATVEAGSFSAASRKLSVPLPTVSRKLAALEEHLGVRLLMRSTRSLTLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +   ++  ++   +         P G+L +   +  G+  L   + +FL  +P 
Sbjct: 61  AGLTYLQSCKQILDQVTEAERSASGEYTTPRGELVVTAPVVFGRLHLLPIINDFLASFPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+LIL +K + +  D+ D A+R+ + +  S ++  ++ T+     A+P YL +  +P 
Sbjct: 121 INIRLILSDKTMHLVDDHIDAAVRVGR-LPDSGMMATQVGTVCRVVCASPEYLASHGKPT 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNS 227
              +L +H+ + F  L    +  F   AT    +       L VN+
Sbjct: 180 HPNDLIEHSCVNFEGLPSGALWTFAPAATPANILTVMVKPRLSVNT 225


>gi|288960878|ref|YP_003451217.1| uncharacterized HTH-type transcriptional regulator [Azospirillum
           sp. B510]
 gi|288913186|dbj|BAI74673.1| uncharacterized HTH-type transcriptional regulator [Azospirillum
           sp. B510]
          Length = 314

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 9/291 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD LR    VAR GS + AA  L ++ S++ R+++ LE  +G +LF +   G  LT  G
Sbjct: 6   NWDDLRYLLAVARHGSLSAAARALGVNHSTVLRRVTALEQAMGARLFDKLPGGYVLTTAG 65

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            ++ RV  ++   L      L  S  + SG LR+ T   L   +L  ++  F   +PD++
Sbjct: 66  DEMQRVAQKMEEDLAAANRLLSGSDTRISGSLRVTTLDILTLYILPRHIAAFRRRHPDLR 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+     + ++   AD AIR        +L+ R +  +   AY A  YL+       I
Sbjct: 126 IDLVAAEASLSLTRREADVAIRATTS-PPENLVGRAVSGLAFAAYGAVAYLERTG---DI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L++H  +   +         N     +R +    +   +VNS    ++    G G+ L
Sbjct: 182 GGLERHPWVGLDE----SFAHTNLAHWTERTVPAASV-RYRVNSVAGAVEAVRAGIGLGL 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           LP  +V  +P   RI + +      ++    E L++ G+++AF +F+    
Sbjct: 237 LPCGVVDGDPAFRRIGDPIPEADTKLWLLTHEDLRHMGRVRAFLDFMAEAL 287


>gi|238026631|ref|YP_002910862.1| LysR family regulatory protein [Burkholderia glumae BGR1]
 gi|237875825|gb|ACR28158.1| LysR family regulatory protein [Burkholderia glumae BGR1]
          Length = 301

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 119/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L+L +S +SR+++GLE  +G++L  R  R  TLTE G
Sbjct: 3   DLNDLYFFVQVVDHGGFAPAGRALNLPKSRLSRRVAGLEERLGMRLIQRSTRRFTLTEVG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +  +     +  + +     +     +P G +R+   I L  +L+   L  F+   P ++
Sbjct: 63  ATYYAHCRAMLVEADAADEAVALRHAEPRGIVRVTCPIALLDSLVGEMLGAFMAQCPQVE 122

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D A+R+R  P++ S L+ R L        A+P  L     P  
Sbjct: 123 IHLEETNRRVDVVGEGVDIALRVRPPPLEDSDLVLRPLAERGQCLVASPALLARVTPPRV 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L     +  G   P+    +N           P        +  ++    V G G+ 
Sbjct: 183 PADLAALPSLALGQ--PQDDHVWNLRGPHGAHATVPHRPRFVTRAMFALRAAAVAGVGVV 240

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +++D      L  ++ D       V+            ++A  +F+  +
Sbjct: 241 QLPTMMIRDAVARSELQVVLPDWAPRREMVHAVLASRRGLLPAVRALLDFLVER 294


>gi|126454337|ref|YP_001064424.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|167822157|ref|ZP_02453628.1| transcriptional regulator, LysR family protein [Burkholderia
           pseudomallei 9]
 gi|226194614|ref|ZP_03790209.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242317742|ref|ZP_04816758.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
 gi|126227979|gb|ABN91519.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106a]
 gi|225933315|gb|EEH29307.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242140981|gb|EES27383.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1106b]
          Length = 322

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 127/300 (42%), Gaps = 12/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G 
Sbjct: 7   LSALETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I
Sbjct: 67  LYLATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +  +DI  +  D A+R+      S ++ + + +      A+P YL     P +  
Sbjct: 127 ELSLSDHYVDIVGEGFDLALRMGNYDLPSQIV-KPIGSNRGLPCASPGYLARRGRPTAPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +    P     + +     R   EP+   L  + Y   +   + G+G+   
Sbjct: 186 DLAQHDCVIYRH--PTLANTWTFERGGVRARLEPK-GPLVTDDYGLALAAALDGAGVLPC 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P + V D      LV ++ D    S +     +   YP + + + K++     +  +  D
Sbjct: 243 PQWSVVDALEAGRLVPLLIDWRFESASFGEDRICAAYPSSRRGSTKIRRLVERVQARLAD 302


>gi|167631751|ref|ZP_02390078.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0442]
 gi|254743352|ref|ZP_05201037.1| transcriptional regulator, LysR family protein [Bacillus anthracis
           str. Kruger B]
 gi|167532049|gb|EDR94685.1| transcriptional regulator, LysR family [Bacillus anthracis str.
           A0442]
          Length = 300

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 132/295 (44%), Gaps = 16/295 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EVGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKN 176
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       + L  
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISAPLYESELIIVVPTGHQLAK 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
               +SI EL  + LI    L+PK       + +  +         L++++  S++Q   
Sbjct: 181 HNH-VSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPKPILEISTMESLIQMVS 235

Query: 237 LGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F 
Sbjct: 236 KGMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFI 288


>gi|170740705|ref|YP_001769360.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194979|gb|ACA16926.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 307

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 134/288 (46%), Gaps = 6/288 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           WD  R    V R+G+ + AA  L +  +++ R+I  LE ++G +LF+R A G   T+ G 
Sbjct: 9   WDDYRFALAVFRAGTVSAAARLLGVDHATVIRRIDRLERQLGERLFHRRASGYVATQAGQ 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            +      V   +   Q  +  S+ + +G +RI      G   L   L   +  +PD+ I
Sbjct: 69  AVAATADAVESAIINGQSLVGRSAARLTGTVRIGAPDGFGSTFLAPRLTGLVERHPDLDI 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL+   +   +S   AD AI L  P +   ++ RKL    +  YAAP YL+      S +
Sbjct: 129 QLVATARLFSLSKREADIAIGLSLP-REGRIVGRKLTDYALKLYAAPSYLRAAPPIESRR 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L++H  + + + +    E  ++L  V   IG    + L+  + ++ +     G G+A+L
Sbjct: 188 DLERHRFVGYIEELLYTPE-LDYLRQVSSGIG----ARLRSANVIAQLHAVAAGIGLAVL 242

Query: 245 PDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P ++    P+LV ++   +  + + +       ++  +++A    I+ 
Sbjct: 243 PCFMAAGRPDLVCVLPREVVLTRSFWLLMHADSRDLARVRAVAEHIYA 290


>gi|299529901|ref|ZP_07043329.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
 gi|298722073|gb|EFI63002.1| transcriptional regulator, LysR family protein [Comamonas
           testosteroni S44]
          Length = 305

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 131/298 (43%), Gaps = 10/298 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  SG+ + AA +L ++++++S  ++ LE   G++L  R  R +  TE 
Sbjct: 1   MDSQSLTLLVEIIDSGNLSQAARKLKMTRANVSYHLTQLEKSAGVQLVKRTTRRVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+     +++++   +  +        G++ I+     GQ ++   L EF  LYP I
Sbjct: 61  GMRLYEHGRNIHNEMLAAREAITALGQSLQGRVGISVPSGYGQIVMSEWLIEFKRLYPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N+  ++  D  D  +R+ +     SL+ R L T+   A A+  Y +    P +
Sbjct: 121 VLDVLFENRADNL-RDDVDIIVRVIQE-PPLSLVARSLGTVRYLACASREYAQTHGLPRT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L    LIT G    +        +     + EP    +    +  +    + G G+ 
Sbjct: 179 LHALRASPLITAGVTGRQLRLAAYLGSERHEVMLEP---TMISEHFPFLRDGILAGLGVG 235

Query: 243 LLPDYIVKDNPNLVRI---MEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L+PDY+V+D      +   +++     F   +Y  Y      T  ++   +F+  KA+
Sbjct: 236 LVPDYVVQDKLATGEVLSTLDEYRLSIFGTHMYLLYLPNRHQTKAVRTCIDFLLAKAQ 293


>gi|126641849|ref|YP_001084833.1| LysR family transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 274

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 112/264 (42%), Gaps = 10/264 (3%)

Query: 33  SISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQESSVKPS 92
            ISR I  LE  +G +LFYR+ R +T TE G         +  + +  Q  LQ+ +++PS
Sbjct: 1   MISRTIQQLEDALGQQLFYRNTRAITPTESGKLFFEYAKRITEQFDEAQKALQDKTIEPS 60

Query: 93  GKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRLRKPIQS 152
           G +RI   +  GQ  +   L      YP + I+LI  ++ ID   +  D   R+   +  
Sbjct: 61  GLVRINAPVFFGQRHIAPWLAGLSERYPRLLIELIQTDEFIDPLRESTDLIFRIGA-LTD 119

Query: 153 SSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVD 212
           SS   R   T   H  A+P Y+          EL++H  + +     +    +      +
Sbjct: 120 SSFHARIFGTQKYHLAASPQYVAKYGTLDHPTELNQHKCLVYKGF--EGPNRWLVRKPNE 177

Query: 213 RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVI----TP 265
             +  P    L  N+  S+M   +   GI L PD+++ +     +L++++ +      +P
Sbjct: 178 EWVHYPITPLLSSNNAESLMTAALHSMGIVLFPDWLIGEALKKGDLIKLLPEYEVAIKSP 237

Query: 266 SFTVYFCYPEALKNTGKLKAFRNF 289
              +   YP        ++A  ++
Sbjct: 238 PQHIAAIYPNVRHPPLNIRAVIDY 261


>gi|261251089|ref|ZP_05943663.1| hypothetical transcription regulator [Vibrio orientalis CIP 102891]
 gi|260937962|gb|EEX93950.1| hypothetical transcription regulator [Vibrio orientalis CIP 102891]
          Length = 310

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 134/297 (45%), Gaps = 13/297 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            DK+  F  V RSGSF  A+ Q  LS ++ SR +  LE  + ++L  R  R L  T+ G 
Sbjct: 13  LDKIVFFCAVVRSGSFREASIQQGLSPAAGSRWVKELEEALSVELIKRSTRQLVATQAGQ 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L+   + +   + +   E+Q  + +  G++RI++T    +  L   + E++  +P +  
Sbjct: 73  LLYDRFAPLLPDINSLCEEVQNLAEEQQGEIRISSTPLFARQYLTKIVAEYMQKHPKVNF 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-----SSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           ++ ++  + D      D A R     +      S L++++L+   ++  A+P Y+K   E
Sbjct: 133 RIFIEAGEFDPLT--IDFAFRASASYEGERDIDSLLVRKRLLRETLYLCASPEYIKQHGE 190

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P++ ++L +H  +    L+      F +    +    +     L+ ++   ++   +  +
Sbjct: 191 PVNPEQLKQHRCLYAKTLLSGNRWCFEYQGESEIVTIQD---TLECDNSEMLLDLALEHA 247

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G+A LP  +V    ++  L +IM +    SF V   Y        +   F+ ++  +
Sbjct: 248 GVAYLPHSLVHPALESGELCQIMANYQCASFDVDMFYRPRSPMPERSSGFKQYLVER 304


>gi|218510217|ref|ZP_03508095.1| putative transcriptional regulator protein, LysR family [Rhizobium
           etli Brasil 5]
          Length = 259

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 110/264 (41%), Gaps = 7/264 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F + A   +F   A +L ++ ++++R I+ LE E+G++LF R  R ++LT  G+   
Sbjct: 1   LRTFLLAAEKRNFAQVARELDMTPAAVTRAIAALEAELGVQLFVRTTRQVSLTTDGAIFA 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    LE  + E+  +     G+LRI+     G+ +L   L  F   YP +  ++ 
Sbjct: 61  AQVQPAVKTLEDARREMMNAHKAEEGRLRISAPTWFGKVVLPPILSGFKEKYPKMSFEIS 120

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L +  ++I  D  D AIR+         I RK+  +     AAP       +     EL 
Sbjct: 121 LSDGLVNIVDDDYDLAIRISSQPSDKFTIWRKIRVVPRILVAAPG--SRFVDMSHPHELT 178

Query: 188 KHNLITFGDLIPKCMEDFNW-LATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             + + +     +     NW L+     I          NS   +      G+G+ALLP 
Sbjct: 179 PDDCLAYSGESRR----ENWILSDGGSSIAISAGRAFSANSGEVLADMAADGAGVALLPG 234

Query: 247 YIVKDNPNLVRIMEDVITPSFTVY 270
           + + ++    R+    +     +Y
Sbjct: 235 FNIAEHIRSGRLFTSFVDGRRRIY 258


>gi|126667107|ref|ZP_01738082.1| putative transcriptional regulatory protein (LysR family)
           [Marinobacter sp. ELB17]
 gi|126628513|gb|EAZ99135.1| putative transcriptional regulatory protein (LysR family)
           [Marinobacter sp. ELB17]
          Length = 267

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 10/259 (3%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +R F  VA +GSF+ A+E   +  SS+SR+++ LE  +G  L  R  R + LTE
Sbjct: 1   MDQLRAIRYFVKVAETGSFSRASEHFGVPPSSLSRRVADLEAHLGTSLLKRSTRVVKLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +  +LE T   + +   +P G+LRI++ +  G+ +    +  F   YPD
Sbjct: 61  IGQNYYAEVCHILSQLEATDEAVGQYQSRPIGRLRISSMVGFGETIFLPLMDRFSARYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + L +    ++ D  D AIR         +I  +L+     A A+P YLK    P 
Sbjct: 121 ITLDITLTDSLSVLNRDDVDLAIR-GGFAPDERVIATRLMDNRFIAVASPTYLKRFGNPH 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSG 240
           +  +L  H  + F            WL  VD  + +       + NS   +      G G
Sbjct: 180 NPGDLRNHKGLYFRTPQGPT----PWLCEVDGRLQDVSAPAAAISNSGHWLRDKAERGEG 235

Query: 241 IALLPDYIVK---DNPNLV 256
           I LLP ++++      +LV
Sbjct: 236 ILLLPRWVLEPFLQKGSLV 254


>gi|268589598|ref|ZP_06123819.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
 gi|291315072|gb|EFE55525.1| transcriptional regulator, LysR family [Providencia rettgeri DSM
           1131]
          Length = 296

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 127/297 (42%), Gaps = 8/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+ D + L+VF  VA  G+F +AA+ L +  S++SR I  LE ++  +L  R  R + LT
Sbjct: 1   MAVDLNLLKVFIAVATQGNFVNAAKLLSMPTSNVSRYIKQLEQQLNSQLIERTTRQMRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G+ L   + ++  +LE   +++     + +G LR+    + G  LL   L +F L +P
Sbjct: 61  ETGNILFEQSQKLVSELEQVVVQICH-PQQVTGTLRLTIPSESGSLLLADLLAKFALSHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + I         D+  D  D  +   R  ++ SS   R + +      A+P  ++   +
Sbjct: 120 QLNIHCDTQLIPQDVISDDIDLLLTFHRGHLEDSSYHSRLIKSWQSVVVASPQLIEKVGK 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P S  +L     I    L     + + ++ +          S  +VNS +      V G 
Sbjct: 180 PCSYSDLANMPCI--SSLSALQGQPWIFIDSSGLQKKVIIDSSYRVNSGILAHAAAVNGV 237

Query: 240 GIALLPDYIVKDNP---NLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G A+L     ++      LVRI  ++V      +   Y      + K+ AF  ++  
Sbjct: 238 GYAILALDACEEQIKQKKLVRIAFDEVSPAPIELRAVYASRSALSPKIDAFLQYLLA 294


>gi|167647232|ref|YP_001684895.1| LysR family transcriptional regulator [Caulobacter sp. K31]
 gi|167349662|gb|ABZ72397.1| transcriptional regulator, LysR family [Caulobacter sp. K31]
          Length = 318

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 115/291 (39%), Gaps = 10/291 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F+ AA++L ++  ++S+QI  LE  VG  LF R  +GL LT+   
Sbjct: 13  LNALRAFEAAARHLNFSRAADELSVTPGAVSQQIQNLEDYVGAALFKRTPKGLLLTDAAQ 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E + +L      L  +      +L +          L   L +F    P + +
Sbjct: 73  TALPALREAFDRLAEAASLLTAAVDGR--RLTLTAAPSFAAKWLVPRLGKFEQAQPQVDV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L    + +D +    D AIR     +   L   +L++  +   A+P  L       S +
Sbjct: 131 WLSAGMEVVDFAAGEVDLAIRYGSG-RYPGLEVIRLLSETVIPVASPELLAANPL-ESPE 188

Query: 185 ELDKHNLITFG--DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            L  H L+  G  D    C +   WLA       +      + N    +++    G G+A
Sbjct: 189 GLSHHILLHDGSPDADDSCPDWAMWLAARGIKSVDGARGP-RFNQSSLVIEAAANGRGVA 247

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L    + +   D   LV   E      F  Y  +P+A     ++KAF +++
Sbjct: 248 LAKQTLAQADLDAGRLVIPFEIPTAVDFAYYVVHPKAKGRLPQVKAFVSWL 298


>gi|254560800|ref|YP_003067895.1| LysR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254268078|emb|CAX23952.1| transcriptional regulator, LysR family [Methylobacterium extorquens
           DM4]
          Length = 312

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 119/292 (40%), Gaps = 15/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R  SF  AA++L ++ ++IS QI  LE  +G++LF+R  R + LT +G+ L 
Sbjct: 13  LRAFEAAGRRLSFRGAADELGVTPTAISHQIRLLEQTLGLRLFHRETRRVRLTAEGAVLL 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V  + +        +++      +G L ++         L   L +F   +P   ++L 
Sbjct: 73  PVLRDGFDAFAEAIDQIRGRRA--AGVLTLSAPTAFVAKWLVPRLADFRAAHPACDLRLH 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  ID + D  D A+R   P   S     +L+   +    +PH         S+ +L 
Sbjct: 131 ASDSLIDFARDGVDVAVRYG-PGPYSDFDAHRLLAERVTPACSPHL-----AIRSVGDLR 184

Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H L+ F    L  +      WL       G    + ++ +    ++Q  + G GIALL 
Sbjct: 185 HHTLLHFEWPRLTDETPTWPAWLRHAGV-TGVDGRAGIRFSDEGHVIQAAIAGQGIALLS 243

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           D +  D   +  LV+     +  +   +   P        ++   +++   A
Sbjct: 244 DVLTADELTSGALVQPF-GPVLDAHPYWVVRPRHSVRKADVEKLVSWLVAAA 294


>gi|152989141|ref|YP_001346295.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964299|gb|ABR86324.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 306

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 122/304 (40%), Gaps = 16/304 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARG---LTL 59
              + LR F   AR  SF+ AA +L+++ +++ +Q+  LE  +G +LF R   G   LTL
Sbjct: 1   MYLNALRAFEAAARHLSFSAAAAELNVTPAAVGQQVRNLEAWLGSELFIRAGHGAARLTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE            + +L +    L++S  +    L +  +       L   ++ F   +
Sbjct: 61  TEAARAALPDIRAGFERLASGLARLKDSGRQAG--LTVTVSPAFAAKWLLPRIERFQQAH 118

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I + L  +++ +D   +  D  +R     +   L   +L+   M    AP Y      
Sbjct: 119 PRIDVLLDTNSRSLDFHHERIDIGVRYGAG-RWPGLAAIRLLDEVMFPVCAPGYPPLRNG 177

Query: 180 PLSIQELDKHNLITFGDLI--PKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
            LS   L +  LI    +   P       WL              L +N+  +++Q  + 
Sbjct: 178 RLSRAALARCTLIHDLSMASDPDYPTWRTWLDAAGHGDLGADHG-LAINNSAAVLQAAMD 236

Query: 238 GSGIALLPDYIVKDN---PNLVRIMED----VITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G G+AL    +V+D+     LVR +          +   Y  Y        K++AFR+++
Sbjct: 237 GQGLALARSVMVQDDLAAGRLVRPLIGRNGTERALAQAYYVVYRPECGALEKVRAFRDWL 296

Query: 291 FLKA 294
             +A
Sbjct: 297 LGEA 300


>gi|167614913|ref|ZP_02383548.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 302

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 123/298 (41%), Gaps = 22/298 (7%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA ++ ++Q ++++Q+  LE  +G++LF R  RGL LT  G 
Sbjct: 12  LNALRAFEVSARHLNFRAAAGEIGVTQGAVAQQVRHLEDTLGVRLFERLPRGLALTADGL 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +PD+ I
Sbjct: 72  AYFADVRRALNLIGDATDRLAKRRS----SVTISTTPSFASRWLIPRLASFGDEHPDVDI 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + +HA  +P  L         +
Sbjct: 128 RVIADSQFATFQGDGVDLAIRYGKPPFGKGLVARLLFPVDIHAVCSPALLAPSG--ARAR 185

Query: 185 ELDKHNLIT-FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +L    L+    DL P+ +      A VD   G       + N     +   + G G+AL
Sbjct: 186 DLAGQVLLHDAHDLWPEFLAALPERAAVDPAKGP------RFNQSSLAIDAAIAGHGVAL 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT---GKLKAFRNFIFLKAR 295
             D +V  +     L R+ +  +  S   Y  YP   +      K +A   ++  +AR
Sbjct: 240 ASDQLVARDIEAGRLRRLFDFALPLSIGYYIVYPNEPRRPDDIAKTEA---WLIREAR 294


>gi|77456922|ref|YP_346427.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77380925|gb|ABA72438.1| LysR-family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 329

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 7/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-ARGLTLT 60
           S +WD L+ F  VAR+   + AA++L +  +++SR+IS LE+ +G  LF +    G  LT
Sbjct: 24  SLNWDDLKFFLEVARTRKASTAAKRLAVDYTTVSRRISSLESALGTLLFEKSRTSGFVLT 83

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 84  AEGQRLLSYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 143

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL      
Sbjct: 144 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLQLYATQEYLDKHPPI 202

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L KH  I++ D +    E       +           L+  S ++       G  
Sbjct: 203 RRPADLGKHQFISYVDDLAFSSELLYLANVLPGASAH-----LRSTSVIAQFVAAQQGRS 257

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +A+LP ++   +P L+ ++ + I  +   +    E L+   ++    ++I  
Sbjct: 258 LAILPCFLAAQDPRLLPVLPEEIDITRQFWMYCREDLRKLKRITLLWDYIRE 309


>gi|83860014|ref|ZP_00953534.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852373|gb|EAP90227.1| transcriptional regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 327

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 116/294 (39%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LR F  V R  SF  AA +L++S S+IS QI  LETE+  +L  R+  G+TLT QG 
Sbjct: 29  LASLRAFEAVVRLRSFKAAAAELNVSSSAISHQIRRLETELNCRLMQRNRTGVTLTAQGE 88

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     +    +L     EL   + +    L + T        L   L  +        I
Sbjct: 89  RYAFGVTRGMERLLEATEELLSDTGQC---LTLQTYSTFAIRWLVPRLASYSRATGQKPI 145

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L+    D+D S D  D  I +  P Q   +  R L   H+   A+P YL+         
Sbjct: 146 RLVTSQSDVDFSTDAVDACIMIGHP-QDPQVAYRPLFNSHVFPVASPDYLERYGPISQPS 204

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+    + P   +   WL         P    L  +SY   +   V G G+AL 
Sbjct: 205 DLRGHPLL---QVYPSADDWSTWLTATGLSGISPAGEGL-FDSYDLALNAAVGGMGVALA 260

Query: 245 PDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +       +   LV +  +  T      YF  P A +   K+ AF  ++  + 
Sbjct: 261 IEPFAHAELETGALVELFPERRTALPGNWYFATPYAKRGLDKVAAFETWLLEEL 314


>gi|260464225|ref|ZP_05812418.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259030028|gb|EEW31311.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 310

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR     AR  +FT AA++L L+ +++S QI  +E ++GI LF R +R + LTE G+ 
Sbjct: 9   RALRTLEAAARHLNFTRAADELGLTPAAVSHQIKEIEDQLGIVLFTRTSRTIRLTEAGTV 68

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    ++    L    +  +    + +  L++          L   +++F    P I+++
Sbjct: 69  LFEAATDALDLLGRAAMRAR-KIARGTEFLKVTLDAQFATKWLMRRVEDFRKQRPGIELR 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
             +     D  +D  D  IR     +   L   +L    +    +P  L +       ++
Sbjct: 128 FDIAYGLRDFDLDDVDVGIRFGAG-KYPGLCAHRLFDNVIIPVCSPGLLASGPPLREPRD 186

Query: 186 LDKHNL--ITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L  H L  I +            W+A       +   + + VNS  +I Q  + G+ +AL
Sbjct: 187 LFHHTLAHIEWARQGVTWPNWRMWMAAAGVDDFDNSRTIVFVNSSDAI-QAAIDGNAVAL 245

Query: 244 LPDYIVKDN---PNLVRIME--DVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               +V ++     LVR  E    + P F  +  YP+A+ +  ++ AFR++I  + 
Sbjct: 246 ADFAMVANDLSEGRLVRPFELGIKVAPEFAYFLVYPQAMADDPRIVAFRDWILEEV 301


>gi|15891848|ref|NP_357520.1| LysR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15160334|gb|AAK90305.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens
           str. C58]
          Length = 292

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 122/290 (42%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L ++Q+++S+Q+ GLE  +G+ LF R  RGL +T +G 
Sbjct: 8   LNGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKGLEKRLGVALFQRLPRGLKITAEGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    +  + ++ TT   ++   V+    L +          L   L  F   +P I +
Sbjct: 68  ALLPTVTSSFDQMATTLDRIEAGQVREL--LFLGVVGTFAVGWLLPRLAAFQKRHPFIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +N  +D++ +  D AIR  +     +    +L    +     P   +  +EP    
Sbjct: 126 RVSTNNNRVDMAAEGLDFAIRFGQGSWHGT-DAFRLFEAPLSPLCTPKLAEMLKEP---A 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  E   W A           + +  ++ L +M+  + G G+AL 
Sbjct: 182 DLMDATLL----RSYRADEWSTWFAAAGVSPAAQVNAGIVFDTSLGMMEAALQGLGVALA 237

Query: 245 PDYIVKDNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +   +     +M+         + +    ++   T  ++AF +++  
Sbjct: 238 PPSMFSRHLTSGAVMQPFPVTISLGSYWLTRLQSKPQTSAMQAFSDWLLE 287


>gi|332288776|ref|YP_004419628.1| DNA-binding transcriptional activator GcvA [Gallibacterium anatis
           UMN179]
 gi|330431672|gb|AEC16731.1| DNA-binding transcriptional activator GcvA [Gallibacterium anatis
           UMN179]
          Length = 295

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 117/295 (39%), Gaps = 12/295 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AAE+L ++Q++IS QI  LE  +GI LF R  R L LTE G 
Sbjct: 8   LNALKAFDAAARHLSFTKAAEELFVTQAAISHQIKILEDFLGIALFLRKNRTLELTEAGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 + +  KL      L  +  +    + I      G   L   L EF   YP+I +
Sbjct: 68  IYFFDVANILKKLIDATERLTRNKEQN--VISINIPQTFGMQWLVPRLSEFNQRYPNIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D  +     D A+   K    +SL  ++L    +   A+P  L +       +
Sbjct: 126 RINGVDQDEGLLTQEVDIAVYYGKG-DWNSLTVKRLKEARLLILASPELLHSH-PIHHAE 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+   +     M               P       +     +Q  +   G+ L 
Sbjct: 184 DLRQHTLLHVHNRDNWQMALKALKLENIDLQHNPV-----FSHTFMALQAAIHEQGVVLA 238

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
            + + +      NL  ++   +    + Y  Y    +N  K+ AFR+++    R 
Sbjct: 239 NELLAEQELQQGNLQEVLHLQLQDPKSFYVVYHPDRENDDKVTAFRDWLISVMRQ 293


>gi|319761168|ref|YP_004125105.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC]
 gi|317115729|gb|ADU98217.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC]
          Length = 270

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 121/274 (44%), Gaps = 16/274 (5%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           + +S++++S+ +  LE  + ++L +R  R ++LTE+G +L          +E    E   
Sbjct: 1   MGVSRAALSQHLKALEQRLDVRLLHRTTRDMSLTEEGQRLFDALQGALASVERALAE--- 57

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
               PSG +RI T+    Q LL+ +L EFL  YP ++++L+L +   +I  D  D  IRL
Sbjct: 58  ----PSGLIRINTSRVAAQALLEPHLAEFLARYPRLRVELVLADGFSNIVADGMDAGIRL 113

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
            + +    +       + M    +P Y +    P    +L +HN + +       ++ ++
Sbjct: 114 GESLDEHMVAVPITPMVRMAVVGSPGYFERHGTPAEPADLMRHNCLAYRFTSSGAIDRWS 173

Query: 207 WLA--TVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA-----LLPDYIVKDNPNLVRIM 259
           + +     R I          N   S+++  + G G+       +  ++   +  LVR++
Sbjct: 174 FTSPDAEGRTIVLEPQGNAVFNDDESMLRAALQGVGLVKHLDLCMRQHLA--SGALVRVL 231

Query: 260 EDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +    P    +   P   +   K++A  +F+  K
Sbjct: 232 QPWCAPFPGFFLYVPSRAQMPAKIRALMDFLVGK 265


>gi|222832630|gb|EEE71107.1| predicted protein [Populus trichocarpa]
          Length = 249

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 4/249 (1%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    +RVF  +   GSF  AA+QL +S + ++R ++ LE+ +G +L  R  R L+LT+
Sbjct: 1   MDRLQSMRVFAKLVELGSFARAAQQLEMSNAVVTRYVADLESHLGTRLLNRTTRSLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    +  S++   +E  +  +   S   SG LR+ T +  G +LL   L+ F  LYPD
Sbjct: 61  AGETYLQRCSQILEDVEEAESIVAARSQSLSGTLRLVTPVMFGLHLLPQILERFQQLYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +   + L ++ IDI  +  D  + L      S L+ R L++  +   A+P YL+      
Sbjct: 121 VVFDVQLSDRMIDIVEEGRDVGVMLSDLGLGSHLVARPLISAEVILCASPGYLREHPPLR 180

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +L  H  I     +P    ++  L+  +  +  P    L  ++     Q  +   GI
Sbjct: 181 NAHDLSNHRAIAM--RLPNAEHEWT-LSGPEGEVTVPIRPGLLCSNAELAHQAALTNMGI 237

Query: 242 ALLPDYIVK 250
           A+L     +
Sbjct: 238 AMLSSTSCR 246


>gi|53717747|ref|YP_106733.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|134284068|ref|ZP_01770762.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|167717493|ref|ZP_02400729.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei DM98]
 gi|167813614|ref|ZP_02445294.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei 91]
 gi|167892239|ref|ZP_02479641.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei 7894]
 gi|167916996|ref|ZP_02504087.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei BCC215]
 gi|237810320|ref|YP_002894771.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei MSHR346]
 gi|52208161|emb|CAH34091.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|134244520|gb|EBA44624.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|237504010|gb|ACQ96328.1| LysR family transcription regulatory protein [Burkholderia
           pseudomallei MSHR346]
          Length = 322

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 127/300 (42%), Gaps = 12/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G 
Sbjct: 7   LSALETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I
Sbjct: 67  LYLATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +  +DI  +  D A+R+      S ++ + + +      A+P YL     P +  
Sbjct: 127 ELSLSDHYVDIVGEGFDLALRMGNYDLPSQIV-KPIGSNRGLLCASPGYLARRGRPTAPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +    P     + +     R   EP+   L  + Y   +   + G+G+   
Sbjct: 186 DLAQHDCVIYRH--PTLANTWTFERGGVRARLEPK-GPLVTDDYGLALAAALDGAGVLPC 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P + V D      LV ++ D    S +     +   YP + + + K++     +  +  D
Sbjct: 243 PQWSVVDALEAGRLVPLLVDWRFESASFGEDRICAAYPSSRRGSTKIRRLVERVQARLAD 302


>gi|222106901|ref|YP_002547692.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221738080|gb|ACM38976.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 312

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 127/293 (43%), Gaps = 7/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S  WD LR+   +A++     AA  L +  S++ R++  LE  +G+ LF R   G  LT 
Sbjct: 6   SLAWDDLRLVKAIAQALGMAGAAATLGIDHSTVFRRLGALEEALGVPLFERRRSGYALTP 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  R    +  ++   +  LQ   + P+G++R+ T   L   LL      F   YPD
Sbjct: 66  TGEEAVRTAERIEAEVAQLERRLQGREIAPAGEIRVTTADSLLVYLLTPLFARFQQAYPD 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           IQ+ +++ N  +++S   AD AIR         L+ R++  I    Y           P 
Sbjct: 126 IQLDVVIGNNALNLSRRDADIAIRATDNPPD-MLVGRRIGLIAWALYGRGQDFAAASAPK 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              EL+  +    G+ +         +    +    P+    + NS L++      G GI
Sbjct: 185 -PAELNAAHWACLGEDMAGLK-----VVKAAKQQLAPKQLRYRANSVLALADAVEAGIGI 238

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +P +I    P LVR+   +   S +++    + L+++ +++ F +FI  + 
Sbjct: 239 GHIPCFIGDVRPALVRLSPTIPDYSASLWLLTHQDLRHSPRIRVFMDFIAAQL 291


>gi|134292737|ref|YP_001116473.1| LysR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135894|gb|ABO57008.1| transcriptional regulator, LysR family [Burkholderia vietnamiensis
           G4]
          Length = 317

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 128/299 (42%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F  V  SGSF  AA +   ++S++++ ++ LE  +G +L  R  R L LT
Sbjct: 1   MDERLRGVAEFVDVVESGSFAAAALRAGKTRSAVAKIVARLEQRLGARLLRRTTRQLGLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +     +  +L  T+  L     +P+G++RI+  +  G+  +   ++  +  YP
Sbjct: 61  DEGLIYYEQCRRLLAELGETEAALDAGRREPAGRVRISVPVLFGRQCVAPVVRRLVERYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ L   ++  D+  D  D A+R+ +   +S+L+ RKL    M   AAP YL     P
Sbjct: 121 KLEVDLSFSDRIADLVNDGFDVAVRIGELADTSALVGRKLGVQRMGICAAPAYLSRHGRP 180

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
             + EL  H  I +   G   P  +   +      RP G  R+  L   +  +     + 
Sbjct: 181 SGLDELASHVGIAYSRGGQPSPWRVIGADGTVREHRPAGRLRLDDLLAIADAAAAGAGLA 240

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 LP +++     +  L  +M+        V+   P +     K++   + +  +
Sbjct: 241 -----WLPCWLMAPYVRDGRLALVMDSNSVSGAEVFAVRPASRHVPSKVRVVVDALVDE 294


>gi|114777052|ref|ZP_01452072.1| transcriptional regulator, LysR family protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114552573|gb|EAU55033.1| transcriptional regulator, LysR family protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 295

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 125/293 (42%), Gaps = 14/293 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR+F  VAR GS +  A +L +  S++SR++  LET++G++L  R   G  LT  
Sbjct: 1   MNWDDLRLFLAVAREGSISGGARKLGVQHSTVSRRMQTLETKLGVRLIERKKSGYELTPA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L      + H++      L     +  G+LR++    +   +L     +F    PD+
Sbjct: 61  GESLKIAACRMEHEVLEVDGFLGGRDNRLIGELRVSAISSMASGILMPMFAKFSRNNPDV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + +++ NK+I +    AD AIRL     S +LI  +L T+    YA+  YL   R    
Sbjct: 121 DLHVLVSNKNISLVERDADVAIRLTN-TPSDALIGTQLATVSSTIYASHRYLDQLR---- 175

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             E  K   +        C    +W     +     +     V+  L          G+A
Sbjct: 176 -SEGGKPKWLGVSC----CAFHQSWT----KKSAAGQRHNFFVDDALLTTAALKQHMGLA 226

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP +I    P L R        +  ++  +   LK T ++ AFR+ +  + +
Sbjct: 227 YLPCFIGDSEPELARYCAPDPQMNLGLWLLFHPDLKRTARVLAFRDHMIHEVK 279


>gi|319780317|ref|YP_004139793.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166205|gb|ADV09743.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 324

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 119/296 (40%), Gaps = 13/296 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR GS T AA +L+++  ++S QI  LE  +G+KLF R  + + LT  G+
Sbjct: 8   LNPLRAFEATARHGSLTKAATELNVTHGAVSHQIKALEQSLGVKLFERVGQRVKLTPHGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L    S  +  +      +   +   SG L ++    L    +   L  F+  YPDI++
Sbjct: 68  ELLPAVSTAFDGIAAATQRMTRPAS--SGTLSVSCVPALLLLWMTPRLGSFMAQYPDIRL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            LI  N   D+     D  +       +   + RK   + +    +P  + N R   S++
Sbjct: 126 TLIPSNDPKDLRAPNIDVCVHYGDGSWTDCWM-RKWSGLELFPVVSPTLI-NNRPIRSVR 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL- 243
           +L  H  +   D      E   WLA  D  +   R     +       +  V G G+AL 
Sbjct: 184 DLADHVFLHGDD----GREWHTWLAAAD-ALDLERGRRHHLGDARMATEAAVHGHGVALG 238

Query: 244 --LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF-LKARD 296
             +    +     LV      +      Y      ++ T  ++ F +++F  KA D
Sbjct: 239 DSVTASALLARGMLVAPFSLSVPAVDDFYVVCRNEMRATPIVQVFIDWLFAEKAAD 294


>gi|107025652|ref|YP_623163.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|105895026|gb|ABF78190.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU
           1054]
          Length = 308

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 109/289 (37%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 18  QALRAFESAARLASFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGVTLTADGQC 77

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 78  LYEAVRLSLDTLRGATATLRARRE--HGALTIVTDFGFATYWLMPRLAGLKRVMPDVDVR 135

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+ D A+        S    R L    +    +P +    R     + 
Sbjct: 136 VVTS-QDYDAQRDHGDIAVLFGDGHWPSCTAAR-LFPESVTPVCSPAFRDAHRGVARAEH 193

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    ++                +  NSY  ++   +LG G+AL  
Sbjct: 194 LLALPLLHVQPTRPERWLSWSGWFDAHGLESPAATRGVTFNSYALVIHAALLGEGVALGW 253

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +      LV++++  +  S   +   P           FR ++ 
Sbjct: 254 APLVDELVAAGQLVKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 302


>gi|315180407|gb|ADT87321.1| transcriptional regulator, LysR family [Vibrio furnissii NCTC
           11218]
          Length = 303

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 128/290 (44%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F  V + G  T AA+ L L +SS+SR+I  LE    +KL  R AR  TLTE G 
Sbjct: 4   LEALTLFQHVVQLGGITQAADFLSLPKSSVSRKIKELEEHYNVKLINRSARHFTLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H  + +V   ++  + E+     + SGK+R+   +      L   L+EF   YP IQ+
Sbjct: 64  IFHVHSRDVLTHVDVLEQEMAAYGQEMSGKIRLLC-VSPMIKCLGELLREFCKAYPHIQL 122

Query: 125 QLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L         I     D  ++L +P+  S+L+ +++  ++   YA+P YL     P + 
Sbjct: 123 ELHAQEVVERTIPKRRFDLLVQLGQPVI-SNLVAQQIGAMYADYYASPTYLAEFGTPNTP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H LI     + +    F W  +  R +   R +   V+S          G GIAL
Sbjct: 182 EDLLQHRLIF--REMSQDEHKFWWFESPTRKLDLGRANMTIVDSPEMTFTLATQGFGIAL 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPD  +        LV +          +   Y +      +++   +++
Sbjct: 240 LPDIQLAQAIKEKQLVPLFNQQHRRRVPINLVYHDRQHIPRRVRLLIDYL 289


>gi|167590082|ref|ZP_02382470.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 298

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 115/269 (42%), Gaps = 7/269 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
           ++L +S++++S++I+ LE   G+ L  R  R + LT+ G  L   T + +  +      +
Sbjct: 30  QRLGISKAAMSQRIADLEKAAGVPLVRRTTRSVRLTDAGQTLVDSTRDAFESIGQHFARV 89

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
           +E + +P G LR+   + LG+  +  +L +FL  +P + I+L L ++   ++ +  D AI
Sbjct: 90  KELAGEPRGLLRVTAPVALGRQQIVPHLPDFLRQHPGVHIELDLSDRLHSLTQEGFDLAI 149

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R       +  +  KL        A+  YL     P    EL  H+ + +          
Sbjct: 150 RHTTTAPQTH-VAWKLCDTRSLLVASRDYLDARGTPRHPSELVDHSCLCYLREHEPAAWS 208

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMED 261
           F       + +  P       N+  ++ +  + G GIALLPD+  + +     LV +++ 
Sbjct: 209 FEPDGRRRQRVSVPVRGSFAANNSEAMREAALGGLGIALLPDFSARRDLDAGRLVALLDG 268

Query: 262 VITPSF---TVYFCYPEALKNTGKLKAFR 287
                     ++   P +      ++A  
Sbjct: 269 WRPSGAFVEHIFAIRPYSPVVPSAVRALV 297


>gi|148554611|ref|YP_001262193.1| LysR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148499801|gb|ABQ68055.1| transcriptional regulator, LysR family [Sphingomonas wittichii RW1]
          Length = 305

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 117/291 (40%), Gaps = 12/291 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LRVF  VAR  SFT AA++L ++Q+++S QI  LE  +G  LF R +R + LTE G  L 
Sbjct: 11  LRVFECVARHLSFTRAADELCVTQAAVSHQIKALEEWMGGPLFQRLSRTIKLTELGESL- 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V               +      +  L +          +   L  F   +P + ++ I
Sbjct: 70  -VAPIGQALDIMADATGRALDRDQNVPLTVGVFDSFSSAWIIPRLARFRERFPAVDVRFI 128

Query: 128 LDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              ++ D +S   AD  IR        +    +L+T  +    +P  ++    P S+ + 
Sbjct: 129 AKRQEDDALSSGDADIEIRFGNG-SWPNFQVERLLTESVLPVCSPALIERHGAPGSLADA 187

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
            +  L+     I     D++         G         +    + Q C+ G GIAL   
Sbjct: 188 PRFPLLHDVFSI-----DWSEFLQYFGVRGANVHRGFGFSHSHLVKQACIDGQGIALGRW 242

Query: 247 YIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            +V ++     LVR   +V+      Y    +A+ +   +KAF  ++  +A
Sbjct: 243 PLVAEDLESGALVRPFPEVLALDSAYYIVCRKAVSDEANIKAFAYWLLDEA 293


>gi|146279324|ref|YP_001169482.1| hypothetical protein Rsph17025_3293 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557565|gb|ABP72177.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 312

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +F WD L+ F  VAR+G  + AA QL  S  ++SR+I  LE  + ++LF R+ RG  LT 
Sbjct: 3   NFTWDDLQFFLAVARTGQLSRAARQLRTSHVTVSRRIDRLEAALRMRLFERNPRGYELTP 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L      +  + E  Q+EL        G LR+A     G    +  L  F   +P+
Sbjct: 63  VGRRLIETAERMEAETERMQVELLGDGPGQRGVLRMAVPEGFGSWFSRVLLGPFTSRFPN 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++LI   + + +S   AD  + L  P +++     K+    +H YA   YL +     
Sbjct: 123 ISLELITLPQIMSLSRREADLTVTL-DPPKATPYHSEKITDYSLHIYATRSYLADHPPVR 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L KH  I + + +       ++L+ V   I     +  + +S  + +     G G+
Sbjct: 182 HRDDLLKHPFIGYIEEMIFA-PGLDYLSEVHPGI----RASFKSSSIFNQLAATRNGLGL 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            +LP YI +  P+L  ++   +    T +      ++   + ++  +F+  + R
Sbjct: 237 CVLPFYIARMFPDLEMVLPHEVVLRRTYWLTCHRDVRPLPRERSVMSFLLEEGR 290


>gi|332995147|gb|AEF05202.1| transcriptional regulatory protein [Alteromonas sp. SN2]
          Length = 293

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 138/288 (47%), Gaps = 6/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD LR+F  +AR+G  + AA  LHL  +++ R++  LET +   LF    +G  LT+ 
Sbjct: 1   MNWDDLRLFLGLARNGKISIAARNLHLDATTLIRRVKRLETALNCNLFELSNKGYLLTDH 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L          +   + +L +   + SG +R++ +   G  +L   L EF   YP I
Sbjct: 61  GKRLVNYIEHAERHILEAKNDLTDERQELSGTVRVSASEGFGSWVLAPALAEFKQRYPAI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+ ++  ++I+   AD AI L KP +   L  ++L    ++ Y     +     P S
Sbjct: 121 CVELVANSGFLNINKREADIAILLEKPTK-GLLYTKRLTDYRLNLYMHEDLVAAHGAPTS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I++L   NL+++   +    +    L  ++  +  P +  L+  S  +  Q     +G+ 
Sbjct: 180 IEQLSPFNLVSYVPDLIYAPQ----LNFIEESLLSP-LHALKSTSINAQFQMLRNKAGVG 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +LP +I K+   L  +++D I  + T +      +++  ++  F +++
Sbjct: 235 ILPHFIAKNAHELQPVLQDKINITRTFWLATHRDVRHLARVNVFLDWL 282


>gi|118477828|ref|YP_894979.1| LysR family transcriptional regulator [Bacillus thuringiensis str.
           Al Hakam]
 gi|196043394|ref|ZP_03110632.1| transcriptional regulator, LysR family [Bacillus cereus 03BB108]
 gi|225864395|ref|YP_002749773.1| transcriptional regulator, LysR family [Bacillus cereus 03BB102]
 gi|118417053|gb|ABK85472.1| transcriptional regulator, LysR family [Bacillus thuringiensis str.
           Al Hakam]
 gi|196025703|gb|EDX64372.1| transcriptional regulator, LysR family [Bacillus cereus 03BB108]
 gi|225789642|gb|ACO29859.1| transcriptional regulator, LysR family [Bacillus cereus 03BB102]
          Length = 300

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 132/295 (44%), Gaps = 16/295 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  EAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKN 176
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       + L  
Sbjct: 122 NIKLSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISTPLYKSELIIVVPTGHQLAE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
               +SI EL  + LI    L+PK       + +  +         L++++  S++Q   
Sbjct: 181 HNH-VSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPKPILEISTMESLIQMVS 235

Query: 237 LGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F 
Sbjct: 236 KGMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFI 288


>gi|300693936|ref|YP_003749909.1| transcriptional regulator, lysr family [Ralstonia solanacearum
           PSI07]
 gi|299075973|emb|CBJ35285.1| Transcriptional regulator, LysR family [Ralstonia solanacearum
           PSI07]
          Length = 305

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 128/277 (46%), Gaps = 12/277 (4%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
             L ++ +++S+ ++GLE  +G++L  R  R L+LTE+G+   R        L+T    +
Sbjct: 14  RLLGVTSAAVSKNVAGLERALGVRLMNRTTRTLSLTEEGAAFLRQARVALEALDTAIDSI 73

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
                 PSG++RI+T+   G+  L   L   L  YP + +++  D++ +D+  +  D AI
Sbjct: 74  AAQRAAPSGRVRISTSWAFGREQLMPALPGLLARYPGLSVEVDFDDRIVDLVREGYDLAI 133

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF----GDLIPK 200
           R    I  S+L+ R +  +++   A+P YL     P    EL  H LIT     G L P 
Sbjct: 134 R-GGSIPDSALVSRPIFRLNLVVVASPDYLARHGIPRVPAELRLHRLITRRFLGGRLAPW 192

Query: 201 CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVR 257
              + +   T   P      + L +++  +++Q    G G+A +  ++  ++     L  
Sbjct: 193 GFREEDGSITTFDPADS---AVLTLSAPEAVVQAACDGVGVAQVGVHLAWEHLRSGALKV 249

Query: 258 IMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++     P  + +   YP       +++A R+++   
Sbjct: 250 VLHRYHLPGDYEMVMQYPHRALVAPRVQATRDYLLEA 286


>gi|254368473|ref|ZP_04984490.1| transcriptional regulator [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157121367|gb|EDO65568.1| transcriptional regulator [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 298

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           +        FY +   GSFT+ A+ L +S++++S  I  LE E+ + L  R  R L+LT 
Sbjct: 6   NISISLFEAFYQLVVHGSFTNTAKALGISKAAVSHTIKQLEKELKVDLLNRTTRSLSLTY 65

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      + ++++      +    +PSG L+I+T+    QN+L   +KE+   +  
Sbjct: 66  EGMLLFNYCKTLQNEIDNIHDLAESFHKEPSGTLKISTSSFFAQNILINLIKEYSKKFSK 125

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I++ ++ K  +   + AD  + +       +++  K+ T      A+P Y+     P 
Sbjct: 126 VKIEVSIEEKMPNFKSNEADIILGVNW-TPPENIVACKIATTRYVLCASPAYINKNGSPS 184

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +I +L  HN I     +   +         ++   +   S +  N+   I    +   GI
Sbjct: 185 NISDLANHNYIPHKSRVTPLVN-----IKKNKLNPQTLPSNISANNIEFIKACVLNDFGI 239

Query: 242 ALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           A   +YIVK+      L+ +++D       +Y  YP+      K+K F N + 
Sbjct: 240 AQFHEYIVKNEIQNSQLIELLKDNFFDQQDIYIYYPKNKFVQPKVKEFVNLVI 292


>gi|157372099|ref|YP_001480088.1| LysR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157323863|gb|ABV42960.1| transcriptional regulator, LysR family [Serratia proteamaculans
           568]
          Length = 304

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 119/297 (40%), Gaps = 7/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + L++F   A   SF   A +L +S   ++R I  LE   G +LF+R+ R + +T
Sbjct: 1   MQNRLEALQIFCAAAEESSFKQVAIRLAISPQKVTRAIKELERLRGEQLFHRNTRQIKIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G+       +V  + E    +  +      G +RI      G+ ++   L E  +LYP
Sbjct: 61  QFGADFAEQAKQVISQFEQLFPDKHKMREDIRGIVRITAPNTFGREVVMPALTELAVLYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I ++  L N   ++  +  D  +R+   +   + + R+   +  +  AAP  L     P
Sbjct: 121 AITLEFHLANTHSNLVDEEIDIGVRIGF-LHDQTCVVRQPKMMPFYLVAAPSLLARTGLP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            SI+EL    +I    +  K    + W  +  R    P  +    +         + G G
Sbjct: 180 KSIEELSSLPIIAL--INRKTGRYWPWEFSNKRRF-HPEQAAFITDDPDIERNAALAGIG 236

Query: 241 IALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
              +  Y+V+    +  L+ ++ +     + +    P       +++   ++++ K 
Sbjct: 237 FGHMAGYLVEKYLASGQLISVLPNDAPEPWPLNLYRPYQEPVPARIRLVFDYLYEKL 293


>gi|325272040|ref|ZP_08138482.1| transcription regulator protein [Pseudomonas sp. TJI-51]
 gi|324102828|gb|EGC00233.1| transcription regulator protein [Pseudomonas sp. TJI-51]
          Length = 230

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 5/234 (2%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D   ++  F      GSF+ AA+ L+LS   + +Q+  LE  +G+ L +R  R  +LT+
Sbjct: 1   MDRLTQMATFVKTVELGSFSAAADDLNLSPQLVGKQVKMLEQHLGVSLLHRTTRRQSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G   +     +   +++ +     +   PSG+LRI   +  G   L   L E+++ YP 
Sbjct: 61  FGRAFYPRAKLILADMQSAESLAALTRGTPSGRLRINAPVTFGIRTLSPRLLEYMVRYPQ 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L L N+ +DI  D  D   R+ + + SS L    L    M   AAP YL      +
Sbjct: 121 VSVDLTLSNELVDIVDDGYDVVFRIGE-LASSGLKALPLEPYQMVLCAAPSYLARRPPII 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYC 235
           +  +L +   + F     +    F+   +    I  P  S L +N    ++   
Sbjct: 180 NPWDLQQQECLGFTYSDGRSHWSFD---SPGGRIDVPITSKLTINQGDPLLAAA 230


>gi|301166488|emb|CBW26064.1| putative LysR family transcription regulatory protein
           [Bacteriovorax marinus SJ]
          Length = 304

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 139/287 (48%), Gaps = 13/287 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF  VA++ S++ AA+++ +S++ +S+ I+ LE E G KLF R  R + L+  G +L 
Sbjct: 17  LSVFEKVAKNQSYSLAAKEMGVSKAYVSKIITSLEEEFGEKLFIRSTRKVKLSYLGEELL 76

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              S   + LE+    L   S  P G  +++     G++ +   L +    YPD+++ + 
Sbjct: 77  AKCSSPLNILESISESLANRSPTPKGVFKVSLAGAYGEDYIAPVLFKMAKEYPDLKVDIS 136

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              +++D+  +  D AIR+   +  S+L  RK+     +  A   Y+K   EP S +EL 
Sbjct: 137 FSTRNVDLLDENVDVAIRVGD-LADSNLYARKISFRREYICATKKYVKLNGEPKSPKELK 195

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIALLPD 246
           + N +         + D+ W   + + +   ++S  ++ ++   +++  +   G+  LPD
Sbjct: 196 EFNCLM-------GVGDY-WSFIIKKKVERIKLSGNIRSDNGRVLLKAALDSIGLVKLPD 247

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             VK   D+  L+ +++  +     ++       K++  L+ F + +
Sbjct: 248 VYVKEYIDSGKLLSVLDSYLAKEIPIWAVTHTRKKDSVNLQHFLDLL 294


>gi|169794406|ref|YP_001712199.1| LysR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213159018|ref|YP_002321016.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|215481961|ref|YP_002324143.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301347028|ref|ZP_07227769.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB056]
 gi|301512661|ref|ZP_07237898.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB058]
 gi|301594639|ref|ZP_07239647.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB059]
 gi|332854781|ref|ZP_08435544.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
 gi|169147333|emb|CAM85194.1| putative transcriptional regulator (LysR family) [Acinetobacter
           baumannii AYE]
 gi|213058178|gb|ACJ43080.1| transcriptional regulator, LysR family [Acinetobacter baumannii
           AB0057]
 gi|213986643|gb|ACJ56942.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332727783|gb|EGJ59187.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013150]
          Length = 324

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G
Sbjct: 19  SFDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    +V  ++E  +  L +   +P G ++++    +    ++  L +FL  YP ++
Sbjct: 79  QEFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVE 138

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R    
Sbjct: 139 ISLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RTIKH 197

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     I+ G      +     +      +  P    ++ N    +    + G GIA
Sbjct: 198 YSELQDFPSISLGTQKQNYIWHLCNIRN-GESVDVPYQPRIKSNDLAGVYYAVMDGLGIA 256

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP   V+       LV I+ D  +    +   Y         ++     +  + R
Sbjct: 257 DLPFLTVESEIRKGTLVHILPDWKSNIGMLQLVYVSRKGQRLVVEKLIETLIDELR 312


>gi|111024025|ref|YP_706997.1| LysR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110823555|gb|ABG98839.1| probable transcriptional regulator, LysR family protein
           [Rhodococcus jostii RHA1]
          Length = 303

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 124/292 (42%), Gaps = 10/292 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D LR    VAR+G    AA  L +  +++SR++  LE  +G++L  R A G  LT+ G  
Sbjct: 10  DDLRYLLAVARTGRRRSAALDLGVDHTTVSRRVRALEKALGVRLLQRSADGWELTDVGRS 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKP-SGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +     ++   ++     +   S  P  G +RI      G   +   L +  + +P + +
Sbjct: 70  IAEKARQIEEAVQEAADVVLGISENPLRGTIRITAPDGFGSLFVAPALAKLRMSHPHLVV 129

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +LI D + +++     D A+ +  PI  S L+  ++    +  Y +  Y +   EP S+ 
Sbjct: 130 ELITDTRQLNLYQSGFDLAVAVGTPIT-SRLVSERVCQYSLGLYGSEEYFRAHGEPGSLD 188

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC-LQVNSYLSIMQYCVLGSGIAL 243
           EL  H L+ F D + +  +       +D     P ++      +  + +     G GI L
Sbjct: 189 ELTAHPLVFFVDSLLQVGD-------LDLNRHLPGVAAKFMSTNIFAHVAATRSGGGIGL 241

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LP ++   + +L RI+ D +                   ++A R  I  +AR
Sbjct: 242 LPAFMADQHADLRRILPDAVDVRLAFSLAARRESLTNPAVQAVRQAIQEEAR 293


>gi|229178767|ref|ZP_04306130.1| Transcriptional regulator, LysR [Bacillus cereus 172560W]
 gi|228604706|gb|EEK62164.1| Transcriptional regulator, LysR [Bacillus cereus 172560W]
          Length = 300

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 135/305 (44%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPTAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   ++   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLRNELDIGITF-LPVQDKEILSIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F   +   
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFIEQLKST 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|254184491|ref|ZP_04891080.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
 gi|184215083|gb|EDU12064.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1655]
          Length = 309

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+ LF R  RGL LT  G 
Sbjct: 17  LNALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGVALFERLPRGLALTADGF 76

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +P + +
Sbjct: 77  AYFADVRRALNLIGDATDRLAKRRAN----VTISTTPSFASRWLIPRLASFGDEHPGVDL 132

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + ++A  +P  L         +
Sbjct: 133 RVIADSQFATFQGDGVDLAIRYGKPPFGKGLVTRLLFPVDIYAVCSPALLATPGALARAR 192

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+     +        +LA +   +        + N     +   + G G+AL 
Sbjct: 193 DLAGHALLHDAHDL-----WPEFLAALPERVAIDPAKGPRFNQSSLAIDAAIAGHGVALA 247

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V  +     L R+ +  +  S   Y   P   +  G +     ++  +A+
Sbjct: 248 SDQLVARDIEAGRLRRLFDFALPLSVGYYIVRPSEPRRPGDIAQTEAWLIRQAQ 301


>gi|146277433|ref|YP_001167592.1| LysR family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555674|gb|ABP70287.1| transcriptional regulator, LysR family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 297

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 127/288 (44%), Gaps = 8/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DWD LR+F  VAR+ S + A   L L  +++ R+++ LE  +G  LF +  +G  LTE 
Sbjct: 1   MDWDDLRIFLAVARAESLSGAGRGLRLDPATVGRRVARLEEALGAPLFAKSPQGYALTEA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L          +     +LQ +    SG++RI         LL   L       P +
Sbjct: 61  GQRLLAHAERAEQAVTEAAEDLQGA-AGLSGQIRIGAPDGCANYLLPQVLAAICDGNPGL 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++Q++   +  ++S   AD AI + +P ++  L  +KL   H+H  A+  YL       +
Sbjct: 120 EVQIVALPRVFNLSKREADMAIGVSRP-EAGRLRVQKLADYHLHLAASRDYLARHPPIAT 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +++L  H ++ +   IP  + D           G         NS    + +   G+G+ 
Sbjct: 179 LEDLVAHRMVGY---IPDMIFDKELDYLTGLGSGAVP---FASNSVSVQLNWLRAGAGVG 232

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           ++ D+ +   P LV+I+ + ++   + +    +      +L  F + +
Sbjct: 233 IVHDFAMPSAPELVKILPEALSLRRSFWLIRHQDDARLERLNRFADAL 280


>gi|134278565|ref|ZP_01765279.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
 gi|134250349|gb|EBA50429.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           305]
          Length = 304

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+ LF R  RGL LT  G 
Sbjct: 12  LNALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDVLGVALFERLPRGLALTADGF 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +P + +
Sbjct: 72  AYFADVRRALNLIGDATDRLAKRRAN----VTISTTPSFASRWLIPRLASFGDEHPGVDL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + ++A  +P  L         +
Sbjct: 128 RVIADSQFATFQGDGVDLAIRYGKPPFGKGLVTRLLFPVDIYAVCSPALLATPGALARAR 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+     +        +LA +   +        + N     +   + G G+AL 
Sbjct: 188 DLAGHALLHDAHDL-----WPEFLAALPERVAIDPAKGPRFNQSSLAIDAAIAGHGVALA 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V  +     L R+ +  +  S   Y   P   +  G +     ++  +A+
Sbjct: 243 SDQLVARDIEAGRLRRLFDFALPLSVGYYIVRPSEPRRPGDIAQTEAWLIRQAQ 296


>gi|218670833|ref|ZP_03520504.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli GR56]
          Length = 268

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 117/274 (42%), Gaps = 6/274 (2%)

Query: 11  FYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVT 70
           F  V + GS + AA +L L+Q +I R +  LE  +G +LF R   GL  T+    L    
Sbjct: 1   FLTVLQHGSLSAAARELGLTQPTIGRHVDALELAIGAELFTRSPNGLLPTDAALALEPYA 60

Query: 71  SEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDN 130
             +                + +G +RI+ +  +   +L   L      +P++QI+L   +
Sbjct: 61  ETLAATTAALLRTASSQRERVAGTIRISASEVIAVEVLPAILGPLQDAHPELQIELSASD 120

Query: 131 KDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHN 190
              D+    AD A+R+ +P Q + L+ R++  I +  +A   YL+    P S+ +L  H 
Sbjct: 121 AIEDLVNREADIAVRMAEPQQDA-LVVRRIGDIPLGFHAHRRYLERYGIPQSVADLAHHR 179

Query: 191 LITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVK 250
           LI F             L     P+ +      + +S L+ +     G GI L    + +
Sbjct: 180 LIGFDRQTAYVR-----LVMKRYPVPDGIKFAYRTDSNLAQLAAIRAGVGIGLCQIGLAR 234

Query: 251 DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLK 284
           +N +LV ++ D        +     +LK++ + +
Sbjct: 235 ENADLVHLLADAFNIPLGTWVAMHASLKSSPRCR 268


>gi|254295689|ref|ZP_04963146.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
 gi|157806246|gb|EDO83416.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           406e]
          Length = 322

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 128/300 (42%), Gaps = 12/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G 
Sbjct: 7   LSALETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 ++V  +L     +L E   +P G LR+ T    G  +L      F   +P ++I
Sbjct: 67  LYLATATDVLRRLADGARQLSERDDEPRGLLRVTTAHSFGHAILAPLCAPFAQAFPRVRI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +  +DI  +  D A+R+      S ++ + + +      A+P YL     P +  
Sbjct: 127 ELSLSDHYVDIVGEGFDLALRMGNYDLPSQIV-KPIGSNRGLLCASPGYLARRGRPTAPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +    P     + +     R   EP+   L  + Y   +   + G+G+   
Sbjct: 186 DLARHDCVIYRH--PTLANTWTFERGGVRARLEPK-GPLVTDDYGLALAAALDGAGVLPC 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P + V D      LV ++ D    S +     +   YP + + + K++     +  +  D
Sbjct: 243 PQWSVVDALEAGRLVPLLVDWRFESASFGEDRICAAYPSSRRGSTKIRRLVERVQARLAD 302


>gi|311106831|ref|YP_003979684.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310761520|gb|ADP16969.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           115 [Achromobacter xylosoxidans A8]
          Length = 309

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 10/299 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   L +   +  +G+ + AA +L ++++++S  ++ LE  VG++L  R  R +  TE 
Sbjct: 1   MDTKSLTLLVEILDAGNLSEAARRLKMTRANVSYHLNQLERSVGMQLVRRTTRHVEPTEI 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G KL++    +  +L   +  ++     P GK+R++     GQ ++   L EF   YPDI
Sbjct: 61  GLKLYQHGRSIQDELAAARESVETLGKTPQGKVRLSVPSGYGQFVMTPWLLEFKRTYPDI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + ++ +N   D+  D  D AIR+       +L+ R+L  +   A A+  Y      P  
Sbjct: 121 VLDVLFENSVDDLLRDEVDIAIRIMSE-PPQNLVARELGQVRYVACASRAYAAARGLPQH 179

Query: 183 IQELDKHNLITFGDL-IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            +EL +   I+   +  P  +  +         I EP    +   +Y  +    + G G+
Sbjct: 180 PEELARTPTISAAVIGRPLRLSAYYGGQPRQHVILEP---TVISRNYAFLRDATLAGLGV 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITP--SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            ++PDY+V D+    +LV  +           +Y  Y     +   +     FI  +A+
Sbjct: 237 GVVPDYVVHDDIARGDLVAALPQWRLSIFGRGMYMLYMPNRHHPRAISMIIEFILERAQ 295


>gi|329847713|ref|ZP_08262741.1| glycine cleavage system transcriptional activator [Asticcacaulis
           biprosthecum C19]
 gi|328842776|gb|EGF92345.1| glycine cleavage system transcriptional activator [Asticcacaulis
           biprosthecum C19]
          Length = 321

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 122/297 (41%), Gaps = 11/297 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LRVF   AR  SF  AAE+L ++  ++S+QI  LE  VG++LF R  R + L++ G 
Sbjct: 9   LSALRVFEAAARHESFKQAAEELFVTPGAVSQQIRLLEDHVGVELFVRDGRRVVLSDAGK 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              ++  E + K+      ++  +    G++ ++         L   L EF     DI +
Sbjct: 69  ASAQILKEAFEKMFEATRLMKSGTQ--KGRVTVSAAPSFAAKWLMPRLYEFSAANEDIDV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +  D   +D ++   D A+R       + L    L+   +    +P  L +       +
Sbjct: 127 WVSADMAPVDFAVSDIDLAVRYGNG-HYNGLHVEHLLPEAVVPVCSP-LLFDAAPIRKAE 184

Query: 185 ELDKHNLIT--FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L  H L+     +  P C +   WL       G       + N    +++  V G G+A
Sbjct: 185 DLAHHVLLHDVGAEADPSCPDWAMWLKAHGVE-GVDASRGPRFNQSSMVIEAAVAGRGVA 243

Query: 243 LLPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L    I + +     L  + ++   P  +  +  +P+  + T     F +++  +A+
Sbjct: 244 LAKRTIAEADLQAGRLKVLFDEKDKPLDYGYWLVWPQTREPTPAQVRFMDWLRGQAK 300


>gi|221200786|ref|ZP_03573827.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206982|ref|ZP_03579993.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221173056|gb|EEE05492.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221179358|gb|EEE11764.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 306

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 114/293 (38%), Gaps = 6/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ +  F  +  +GS + AA QLH +Q ++SR++  LE  +G++L  R    + LT  G 
Sbjct: 8   FELMETFVRIVEAGSLSAAAAQLHTTQPTVSRRLQALERSLGVRLLQRTTHAMRLTVDGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +   ++       + +L+ +  +P G LR+A     GQ      L  FL  YP + +
Sbjct: 68  RCFKRAKDLLASWAAFEADLRGAQEEPDGLLRVAVPHAFGQERFVEPLARFLRDYPRVSV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L +   D      DCAI++ +P     ++  +L  +     AAP  L     P    
Sbjct: 128 EWLLQDDVRDFVGSGIDCAIQVGEP-TDPGVVAIRLTNVPRFVAAAPSVLGGADVPRDP- 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +              +        AT D      R   +   +  ++    +LG G  + 
Sbjct: 186 DALAALPWLALSTYYRTELTLTHAATGDTRRIRIR-PRMTTANLYALRSAALLGLGACVG 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +++  +     LV +  +       VY  YP A     +L  F   +    
Sbjct: 245 SSWMLAGDLARGELVHLAPEWHAAPLPVYLIYPHAQFYPSRLVRFAAMMREAV 297


>gi|33600934|ref|NP_888494.1| LysR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33568534|emb|CAE32446.1| putative LysR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 306

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 120/292 (41%), Gaps = 11/292 (3%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L+ F V AR  SFT AA++L ++Q ++S+Q+  LE  VG++LF R  +GL LTE G
Sbjct: 7   SLTDLQAFEVAARHNSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLRIRQGLVLTEAG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               +       ++E   +EL     +  G L +      G   L   L  F  L PDI 
Sbjct: 67  RSYLKKIRAGLGQIEAATLELIAHQGRG-GTLHLTAMPTFGARWLIPRLAAFRRLRPDIH 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +   +  D S    D A+R  + I   S     +V   +    +   +         
Sbjct: 126 VEFLPHRQGYDFSTPELDAAVRFGEGIWPGSG-ADYIVGRDVVPVCSERLVP--GGCQDA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  + L+     +    E F       R   E      + + Y  + Q    G G+AL
Sbjct: 183 ADLLAYPLLHHTSAMEGWREWFEQAGCDTRRSLE----GARFDQYSLLSQAAAAGFGVAL 238

Query: 244 LPDYIVKDNPNLVRIMEDVITPSF---TVYFCYPEALKNTGKLKAFRNFIFL 292
           +P  +++D     ++   +  P       Y CYPE   ++  L+AFR ++  
Sbjct: 239 IPRCLIEDELRDGKLHVPIQLPIRARQGYYLCYPEQKASSPTLQAFRGWLME 290


>gi|293606621|ref|ZP_06688977.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815006|gb|EFF74131.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC
           43553]
          Length = 315

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 133/296 (44%), Gaps = 12/296 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D    + +F  ++++ SF+  A Q  +S +S+SR I+  E E+ +KL  R  R + LTE
Sbjct: 1   MDRLRAMELFLSISKTESFSETARQFGVSATSVSRMITEFENELNVKLLLRSTRQVVLTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +  +    +   +      + E    P G LR+ + +  G  +L   +  F   YPD
Sbjct: 61  AGQEYAQQLESILWNINEAHRNITEIRAAPKGILRVHSRMMFGLGVLPPLVAAFRQQYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I I+L+L     D+  +  D   R+  P+++  L +R L        A+P YL     P 
Sbjct: 121 IHIELVLSEAKTDLRRNNFDIDFRISPPVEA-GLKRRILFKSERFLVASPAYLAKHAAPA 179

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              ++ +H+ + +     +    F     ++  + +PR      N+ +++++  +LG GI
Sbjct: 180 KPGDIAQHDCLAYLLPGDQYCWRFKQGEAIEEVLIKPRH---VTNNGVALLELALLGEGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFI 290
           ALL DY V ++     LVR+  D    + T     Y    +      K++ F +F+
Sbjct: 237 ALLDDYTVHNDISRGTLVRLFPDYQVTNTTFEEGMYATILDTAMIPVKIRLFLDFV 292


>gi|325528663|gb|EGD05746.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 296

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 123/296 (41%), Gaps = 9/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              +R F  VA   SF  AA+QL +S S ++R ++ LE  + ++L  R  R ++LT  G 
Sbjct: 4   LASIRTFVKVAEHRSFAKAAKQLGVSASVVTRSVALLERHLCVQLVNRTTRSMSLTATGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              +  +E+   LE+    +  ++  P+  L+IA +       L   L    +L P    
Sbjct: 64  LYLQHCTELIGLLESMDACIATATGMPAATLKIAASASFASTDLPRLLAMHRVLEPRTAF 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + +   D+++   D      + ++ S+L+ R L  I     A+P Y+     P +  
Sbjct: 124 DLTMFDSMADVAITDFDVCFGTERRLRDSTLVCRSLARIDDVIVASPDYVARHGAPQTPD 183

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL  H+ +      P    +F       R +  P    L     L++    + G GIA L
Sbjct: 184 ELASHDTL-LTTEAPGSYWEFGDDHGTYRAVVRP---ILNAQPPLTVKGAALAGLGIARL 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  +V    ++  L  ++  V       TV+  Y +  + T  ++ F  F+    R
Sbjct: 240 PRALVSAELESGTLQALLAHVALRDGARTVWALYAKQSRQTFAVQNFVEFVVAHYR 295


>gi|325524885|gb|EGD02826.1| LysR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 259

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 129/262 (49%), Gaps = 8/262 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    D+L+ F  V  SGS T AA+QL L+ S+ SR ++ LE ++   L  R  R L LT
Sbjct: 1   MKITLDELQAFAAVVDSGSITAAAQQLDLTVSATSRTLARLEEKLKTTLLRRTTRRLELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G    +    +   +ET + ++      PSG+LR+        +++   ++ +   +P
Sbjct: 61  EEGRAFLQDARAIIASVETAEEQMLARRDMPSGRLRVDAATPFMLHVIVPLVRGYRERFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L  +   ID+     D AIR+ + ++ S+L  R++ +  +   A+P YL    +P
Sbjct: 121 KVELELNSNEGIIDLLERRTDVAIRIGR-LKDSTLHSRRIGSSRVRILASPAYLDAHGQP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++LD+H L+ F    P+ +  +  L   D P        ++ +S  ++ Q  + G G
Sbjct: 180 RKVEDLDRHTLLGFTQ--PESLNVWPLLGADDEPHRIE--PDVRSSSGETLRQLALEGVG 235

Query: 241 IALLPDYIVKDN---PNLVRIM 259
           I  L D++   +     LV ++
Sbjct: 236 IVCLSDFMTAQDRDAGRLVPVL 257


>gi|332715823|ref|YP_004443289.1| HTH-type transcriptional activator ampR [Agrobacterium sp. H13-3]
 gi|325062508|gb|ADY66198.1| HTH-type transcriptional activator ampR [Agrobacterium sp. H13-3]
          Length = 296

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 124/290 (42%), Gaps = 14/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L ++Q+++S+Q+ GLE  +G+ LF R  RGL +T +G 
Sbjct: 8   LNGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKGLEKRLGVSLFQRLPRGLKITAEGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    +  + ++  T   ++   V+    L +          L   L+EF   +P I +
Sbjct: 68  ALLPTVTSSFDQMAITLDRIEAGQVREL--LFLGVVGTFAVGWLLPRLREFQKRHPFIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +N  +D++ +  D AIR  +     +    +L    +     P   +  + P    
Sbjct: 126 RVSTNNNRVDMAAEGLDFAIRFGQGSWHGT-DAFRLFEAPLSPLCTPKLAETLKFP---A 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  E   W A           + +  ++ L +M+  + G G+AL 
Sbjct: 182 DLADATLL----RSYRSDEWATWFAAAGVTPVAQVNAGIVFDTSLGMMEAALQGLGVALA 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           P  +   +     +V+    V     + +    ++   T  ++AF +++F
Sbjct: 238 PPSMFSRHLASGTIVQPFP-VTISLGSYWLTRLQSKPPTPAMQAFSDWMF 286


>gi|326316694|ref|YP_004234366.1| LysR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373530|gb|ADX45799.1| transcriptional regulator, LysR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 315

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 126/298 (42%), Gaps = 7/298 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + D + +RV+  V    SF+ A   L L  S++SR ++ LE  +G++L  R  R L +TE
Sbjct: 4   NLDLNTVRVYVAVVDEQSFSGAGRLLALPSSNVSRHVAALERRLGVRLLERSTRHLRMTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  ++     +   L +T+ EL     +  G LR+    +    LL   L EF  L+P 
Sbjct: 64  AGRLVYERAKPLLDALLSTEEELGAVQRELKGPLRMCMPNEA-PRLLAPILAEFCSLHPG 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSS-LIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+++       +++  +  D +I   +  Q  S  I R+L T+     AAP  L     P
Sbjct: 123 IELECDTRMAGLEVLREDMDLSIVFHRGRQDDSAFITRELATLPSIVVAAPALLAQTGIP 182

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             ++EL     IT   +     + + +L      +  P  S  +VNS    +     G G
Sbjct: 183 RQVRELKSLPCIT--TMSALKGQPWQFLDAAGEIVKVPVRSRYRVNSGELAVAGARQGLG 240

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            A++  +  +D+     L  +  D+      +   Y      T +++A   FI  + +
Sbjct: 241 FAIVAAHPCQDDLAAGRLQEVQLDLSPAPLQLLGAYSHRHSVTARVRALLEFIQEQLQ 298


>gi|83645822|ref|YP_434257.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83633865|gb|ABC29832.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 299

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 22/299 (7%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V + GSFT AAE L  ++S+IS  IS LET VG KL  R  R L LT  G + 
Sbjct: 13  RMLVFNEVVKCGSFTGAAENLGHTRSAISTYISQLETLVGTKLLSRSTRRLHLTPAGRQF 72

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                ++   L+    ELQ+   +P G++ I         L++  + +    YP +   +
Sbjct: 73  ALRCEQMAETLQLAVDELQDFEQEPQGRIAITAPHAFESLLVESVIADLCRQYPKLTADV 132

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
           +  ++ +D+     D AI +  P + S     KL  +     A+  Y     +P   ++L
Sbjct: 133 VFSDQKLDLLEHKLDMAITVG-PQKDSDYHALKLGVLRSFLVASQAYQDTHGKP-DPRQL 190

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
           D H LI          +    L +    +       + VN+  + + Y   G G+ L P 
Sbjct: 191 DNHTLILLP------WQHKASLYSNGEQVPLQAGKAMHVNTLPAAINYARHGLGLLLAPS 244

Query: 247 YIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD---WKF 299
             V D      L R+  D       VY  +    +          FI  +A +   WK 
Sbjct: 245 IFVADAIGRGELERVAPDWQAEDRDVYALHSFGKRLP--------FILRQATERLKWKL 295


>gi|262278850|ref|ZP_06056635.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259201|gb|EEY77934.1| LysR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 288

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 128/289 (44%), Gaps = 15/289 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            DW+ L  F V     S + AA +L +  +++SR+I+ LE  + +KL  R  R   LT  
Sbjct: 7   IDWENLHYFSVFTEEKSLSAAARKLGVDHATVSRRIAQLEQNLKLKLVDRRPRTYILTPD 66

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L +V + +  +  + +   Q    +  G + I+       +L+  +L  F   YP +
Sbjct: 67  GERLAQVVARMMEETFSIERLTQAGQQEVMGSVSISMPPLTAAHLIMPHLGRFYRHYPQL 126

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++++ D   + +    AD A+R  +P +  +L+ RK+  I    YAAP+YL +      
Sbjct: 127 KLRVLGDVHYVSLQHSEADIAVRFGRP-KDENLVARKVGEIPFGIYAAPNYLAS------ 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             + + +  I+         +       +           +  N      +     +G+A
Sbjct: 180 -TDSESYEWISVEVGGVHGQKQQKLKERLGNKE-----PVMVTNHPELQWRAACGEAGLA 233

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +LPD++   + NLVR+ +D    S  ++    E L+++  ++   +F+ 
Sbjct: 234 VLPDFLGTLS-NLVRLQDDHPM-SAEIWLVTHEDLRHSPAIRVVMDFLV 280


>gi|255318698|ref|ZP_05359925.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262378121|ref|ZP_06071278.1| transcriptional regulator [Acinetobacter radioresistens SH164]
 gi|255304196|gb|EET83386.1| transcriptional regulator, LysR family [Acinetobacter
           radioresistens SK82]
 gi|262299406|gb|EEY87318.1| transcriptional regulator [Acinetobacter radioresistens SH164]
          Length = 293

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 133/298 (44%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L+ F V+AR+ + T+ A  + +  S++SR+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLQFFLVLARAKTLTNTARIIGVEHSTVSRRIQALELALGTPLFKREATGYELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L     ++    E   +++++      G++RI T    G   L   L E    YP
Sbjct: 61  LEGLALVPRVEQM----EQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLAKLLAELSKQYP 116

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I LI   K I +S   AD  I + +P     +I R L    +  Y +  YL      
Sbjct: 117 LLTIDLIPVPKMIKLSHREADIVISIDRPKSGPYIITR-LSDYCLKIYGSKDYLAASSPI 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H  + + D +    E +         +     +  + +S L+       G+G
Sbjct: 176 HQLEDLKQHRFVNYIDDLIYSPELY-----CLERLPLQLSASFRSSSILAQQIAVSAGAG 230

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +A+LP ++  + P L +++   +    T +      L++  ++K   +F+  +A  ++
Sbjct: 231 LAILPKFLADEQPELEQVLHKEVRFIHTFWMLTLVDLQHEPRIKLVWDFLRTQADKYQ 288


>gi|77459579|ref|YP_349086.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383582|gb|ABA75095.1| putative LysR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 295

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 8/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA +L+ + ++++R I  +E  +G  LF +HA+G  +T  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAARRLNTTHATVARHIEAIEKSLGTALFVQHAQGYEMTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ +S+  P GK+R+  T  LG   L   +      Y  +
Sbjct: 62  GEALLKHAEAMENVALLAQEEITQSTA-PLGKIRVGVTEGLGIMFLASRMIGLFERYLGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I    A+ +I L +P     L+ RKL    +  YA+  YL N     S
Sbjct: 121 EVELVAVPRFVSILNREAEISIHLERPAAD-MLVTRKLTDYRLALYASRAYLDNAPPLRS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L +H  I + D +    E    L  ++     PR+      S ++  Q    G GIA
Sbjct: 180 REDLGRHAWIGYVDDLLFSQE----LMFLNSFCRNPRV-VFHSTSVIAQQQAARSGLGIA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           +LP Y+   +P+LV ++ D      + +      L  + +L+   +++ 
Sbjct: 235 VLPCYMAASDPDLVALLPDESI-ERSYWISTRRELHKSVRLRVVWDYVV 282


>gi|254501732|ref|ZP_05113883.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222437803|gb|EEE44482.1| LysR substrate binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 307

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 122/296 (41%), Gaps = 10/296 (3%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           D L  F   AR  SFT AAE+LHL+Q ++S+Q+  LE  +G++LF R  + + LT+ G  
Sbjct: 10  DTLIAFECAARHLSFTRAAEELHLTQGAVSKQVRQLEDRLGVELFRRVRQRIVLTDAGRL 69

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                     ++     ++   +      L +A     G   L   + +F+  YPD  + 
Sbjct: 70  YLHDIRGALEQMTLATRQVMSFAGSAD-VLNLAVLPTFGTRWLAPRISDFIRRYPDAGLN 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L +  +  D   +  D AI    P+ + + I   L    +   A+  +          ++
Sbjct: 129 LSVRLQPFDFDEEPFDGAIHHGDPVWAGA-IAEHLFDEEVIPVASRVFRDRH-NIRVPED 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L +   +    L  + +   +W  +      +      +   ++ I +  +  +G AL+P
Sbjct: 187 LTRVPRL---QLATRPLAWRHWFESAGVET-DAAFQGARFEQFVMITEAAIHHAGAALIP 242

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
            + ++    +  LVR+ +         +F YPE       + AFR ++  +AR  +
Sbjct: 243 RFFIEQELASGRLVRLFDVPPEHETAYFFVYPEGRTMRPVVAAFRKWLAEEARSAR 298


>gi|323698645|ref|ZP_08110557.1| transcriptional regulator, LysR family [Desulfovibrio sp. ND132]
 gi|323458577|gb|EGB14442.1| transcriptional regulator, LysR family [Desulfovibrio desulfuricans
           ND132]
          Length = 297

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 126/291 (43%), Gaps = 12/291 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           ++ + +   VAR  SFT AAE L +  S++SR+I  LE  +G+ LFYR  R +  T+ G+
Sbjct: 6   FNDVPLLVEVARRKSFTKAAETLGMGVSTLSRRIKLLEERMGVLLFYRDTRNVEPTDNGA 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNL-LQGNLKEFLLLYPDIQ 123
            L      +  +++     +  +  KP+G +RI   +DL  +   +  L +F + +PDIQ
Sbjct: 66  YLLDRCGYILDEVQNAYDSVVLNMQKPAGLIRICMFLDLYDDRPFKDALMDFAVKWPDIQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L      +D+  D  D A  +   I    LI RKL+TI    YA+P  L+    PL  
Sbjct: 126 MDLTFVEHPVDMRTDPFDVAFLIGPSIALP-LIARKLLTIEPFLYASPALLERYSMPLEP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +   I       +       +    R +           S     ++ + G G+AL
Sbjct: 185 GDLRRLPCIVLQRFGNRWP-----MHDGTRQVTVEVQPQYSFGSVEMCREFALAGHGVAL 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFI 290
           L     + +     L+R++ D        VY       +   +++ F + I
Sbjct: 240 LRREKAEPDERAGRLIRLLPDWSGGFVHDVYLVTGSN-QLPQRVRLFVDHI 289


>gi|86358793|ref|YP_470685.1| LysR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282895|gb|ABC91958.1| transcriptional regulator protein (activator), LysR family
           [Rhizobium etli CFN 42]
          Length = 300

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 124/293 (42%), Gaps = 14/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L ++Q+++S+Q+ GLE  +G+ LF R  RGL +T +G 
Sbjct: 8   LNGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKGLEKRLGVALFQRLPRGLKITAEGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    +  + ++ TT   ++   V+    L            L   L +F   +P I +
Sbjct: 68  ALLPTVTASFDQMATTLDRIEAGQVRELMFL--GVVGTFAVGWLLPRLADFQQRHPFIDL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +N  +D + +  D AIR        +   ++L    +     P    + R   S  
Sbjct: 126 RISTNNNRVDPAAEGLDFAIRFGSGSWHRT-DAQRLFEAPLSPLCIPKLADDLR---SPA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L    L+       +  E   W A    P      + +  +S + +M   + G G+AL 
Sbjct: 182 DLAGVTLL----RSYRTDEWSTWFAAAGVPAAPQVNAGIVFDSSVGMMDAALQGFGVALA 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +   +     +V+     I+   + +    ++   T  ++AF ++IF + 
Sbjct: 238 PPSMFSRHLCSGAIVQPFATAISLG-SYWLTRLQSRPVTPAMRAFSDWIFSEV 289


>gi|294635596|ref|ZP_06714073.1| transcriptional regulator, LysR family [Edwardsiella tarda ATCC
           23685]
 gi|291091048|gb|EFE23609.1| transcriptional regulator, LysR family [Edwardsiella tarda ATCC
           23685]
          Length = 304

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 128/295 (43%), Gaps = 9/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           ++   +L VF  +   GS + AA +L LS+S++S+ ++ LE ++G+ L  R  R L LTE
Sbjct: 4   AYTLHQLSVFVRIIEMGSLSKAARELGLSRSAVSKSLATLEQQLGVLLIKRSTRRLFLTE 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ +      +    +    +L  S  +P G LR++ ++  G   L   +  +   +P 
Sbjct: 64  HGTAVFNRAIMLLDACQDLFTQLH-SETEPEGVLRLSCSVAYGSTCLPDAISAYQRQFPR 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I + L+++ I+++    D  +R+ +  Q        L  ++     +PHYL+      
Sbjct: 123 VRIHVDLNDELINLAERNFDMVLRITQR-QWERANAFLLGKVNWIYCCSPHYLQGKPAIT 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L  H  +T   +     +D       D        S L  NS L++++  +  +G+
Sbjct: 182 QPADLSHHRCLTNPVM---SYQDKWVFCGRDGQQMIAVDSRLTSNSSLTLLKVLLNHNGV 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTV-YFCYPEALKNTGKLKAFRNFIFL 292
           + LPDY+ +       LV ++ D     F   Y     +       ++F   +  
Sbjct: 239 SCLPDYLAEAYIARGELVHLLPDYHAGIFHYLYAIEKTSRVVNPLTRSFIAHLKA 293


>gi|89069746|ref|ZP_01157082.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89044692|gb|EAR50803.1| transcriptional regulator, LysR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 292

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 7/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  LE+ +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARKGTVSGAAEVLGVHHATVIRHIDSLESRLGVKLFQRHARGYTATEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L  V      +       ++      SG+L + +   L   LL   L +F      +Q
Sbjct: 63  QDLLTVAQTTDDQFTQLAGRIRGRGEGVSGELVVTSLATL-SALLAPVLVDFQRENEGLQ 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +  ++   +    A  A+R     +    + +  ++  +   A+  Y+    +P S+
Sbjct: 122 VRYLTGSRLFRLEYGEAHVALRAGAAPEQPDNVVQPFLSQAIRMVASRDYIARRGKPESV 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H+ +    L  +       LA V R          +     S++     G+GI  
Sbjct: 182 EDLKQHDFVGLDPLDSRVPFMRWLLAQVPRE-----RVVFRTMENQSVVDAIAAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
           L ++ +     +V ++  +      ++      L  T K++AF  F+  +A+ W F
Sbjct: 237 LCEWDIDRE-RMVEVLPAMEEWQSRLWIVTHVDLHRTPKVQAFLKFLKERAKGWTF 291


>gi|157376747|ref|YP_001475347.1| LysR family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319121|gb|ABV38219.1| transcriptional regulator, LysR family [Shewanella sediminis
           HAW-EB3]
          Length = 316

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 71/276 (25%), Positives = 129/276 (46%), Gaps = 9/276 (3%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSFT AA+  ++ +S IS+QI  LE E+ ++L  R  R L+LT  G+++ +    +   L
Sbjct: 17  GSFTKAADLRNVDRSVISKQIGKLEDELDVRLLNRTTRSLSLTTAGAEMVKQAVSLREML 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
             T    Q    +P G LRI+++   G+  +Q  ++ F   Y  I ++L L+++ +D+  
Sbjct: 77  SETSRIAQHYHSEPRGTLRISSSTFFGRQYVQKAVEVFQRKYHQIHVELRLEDRVVDMVS 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           +  D   R+ +P + SSL+ RK+    +   A+P +LK  +EPL+I+ L++     +   
Sbjct: 137 EGFDIGFRIGEP-KESSLVARKIARNRLLIVASPDFLKRHKEPLTIEALEQLPTAVYS-A 194

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254
               ++   +                +VN    ++   + G+ +A++    +++      
Sbjct: 195 PGILLDKIKYFDAEGEAAHIQLDIAYRVNDVEMMVMAALSGNMLAVVTAQTIENEVLEGK 254

Query: 255 LVRIMEDVITPSF-TVYFCYPEALKNTG-KLKAFRN 288
           LV IM DV    F T Y  YP        K   F  
Sbjct: 255 LVPIMTDVNLADFGTFYAVYPHR--EPAIKTTLFIE 288


>gi|171319912|ref|ZP_02908990.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
 gi|171094829|gb|EDT39864.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MEX-5]
          Length = 294

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 15/293 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F   AR  SF+ A ++LH++  +ISRQI+G E  +G  +F+R+ + + LT++G 
Sbjct: 8   FSALRAFEAAARHESFSAAGDELHVTHGAISRQIAGFEAWLGKPVFHRYGKRVRLTDEGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +  +     +L+ +       LRI          L   L  F    P++++
Sbjct: 68  RYLDTLRAAFDSIALATEQLRNTGAAR--VLRINALPTFAMKWLLPRLSRFQRDVPNVEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           +L   N  +D ++D  D AIR R P    +      +   +    +P  LK    P++  
Sbjct: 126 KLSTSNAPLD-ALDGFDVAIR-RGPGHWPNCTSDHFLDESVIPVCSPALLKR--TPITRA 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H L+   D  P+   D+ + A    P G  R S    + +   +Q  V G G+AL
Sbjct: 182 DDLARHVLLH-SDTRPEGWRDW-FAAAGVTPKGRKRQS---FDHFYLALQAAVDGLGVAL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            P  ++ D   +  LV  ++     + + ++  P A      +  F  ++  +
Sbjct: 237 GPLPLIDDELASGRLVMPLDGPRIATRSYWWIAPRAPAEDPLVAQFCAWLQAQ 289


>gi|209885918|ref|YP_002289775.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
 gi|209874114|gb|ACI93910.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans
           OM5]
          Length = 297

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 128/288 (44%), Gaps = 6/288 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           F+W+ L  F  +AR      AA +L +  +++SR+IS LE  + +KLF R   G  LTEQ
Sbjct: 2   FNWNDLVFFLELARQNRLAPAARRLRVDHTTVSRRISELERNLSVKLFDRKPDGFVLTEQ 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L  V   +  ++      L    +  +G++R+ T   +G   L   L E     P I
Sbjct: 62  GHRLFVVAERIEQEIGNVPQALGAEDMAATGRVRVVTMEGIGAFFLAERLAELAQRQPGI 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            ++L+ +   + ++   AD  I    P     L+ RKL +  +  YA+  Y+     P  
Sbjct: 122 VVELVTERHIVSLTKREADIFISFIPP-TGQRLVVRKLGSFRLALYASSAYISRNGMPKD 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL  H  + + + +   ++   WL  V     +P     + +S  +       G+GI 
Sbjct: 181 HSELIHHTFVDYVEDL-IAIQPVRWLLDV----IDPLTVSFRSSSMHAQQNAIAAGAGIG 235

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LLP +  K NP LV I+ D +     +Y    E L+   ++++    +
Sbjct: 236 LLPLFSAKRNPGLVPILADAVQVHRDIYLSVHEDLEFLARVRSVIRHL 283


>gi|26988900|ref|NP_744325.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24983710|gb|AAN67789.1|AE016410_5 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 328

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 68/280 (24%), Positives = 119/280 (42%), Gaps = 12/280 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LRVF VVAR  +F  AAE+L ++Q+++++QI GLE  + ++LF R  RGL LT+ G
Sbjct: 41  SLNALRVFEVVARHLNFRLAAEELGVTQAAVAQQIRGLEASLNLRLFERLPRGLALTDAG 100

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
                        ++     L+  +      L ++ T       L   L  F   +PDI 
Sbjct: 101 LGYSGSIRNALAMIDEATRLLRPQASH----LTVSVTPTFASKWLIPRLGSFAHSHPDID 156

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++++  ++    + D  + A+R  KP   + L    L+   + A A+P   +  + P S 
Sbjct: 157 LRVLATDRLSHFNTDGVNLAVRYGKPDIGAGLNSELLMEQRIVAVASPTLFEASKTPTSF 216

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L    L+              +LA V    G+     L+ N     +   + G GIAL
Sbjct: 217 EQLQAFTLLHDAHDF-----WPRFLAQVFPQHGQATARNLRFNQTSLAIDAAISGQGIAL 271

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNT 280
                V D+     L ++    +    + Y  +P  L+  
Sbjct: 272 ASLAFVSDDIVAGRLTQVFAQQLRLDKSFYLVWPRKLQQP 311


>gi|332872787|ref|ZP_08440752.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
 gi|322509705|gb|ADX05159.1| Putative transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323519719|gb|ADX94100.1| LysR family transcriptional regulator [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332738948|gb|EGJ69810.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6014059]
          Length = 324

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G
Sbjct: 19  SFDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    +V  ++E  +  L +   +P G ++++    +    ++  L +FL  YP ++
Sbjct: 79  QEFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVE 138

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R    
Sbjct: 139 ISLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RTIKH 197

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     I+ G      +     +      +  P    ++ N    +    + G GIA
Sbjct: 198 YSELQDFPSISLGTQKQNYIWHLCNIRN-GESVDVPYQPRIKSNDLAGVYYAVMDGLGIA 256

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP   V+       LV I+ D  +    +   Y         ++     +  + R
Sbjct: 257 DLPFLTVESEIRKGTLVHILPDWKSNIGMLQLVYVSRKGQRLVVEKLIETLIDELR 312


>gi|226952233|ref|ZP_03822697.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|294648821|ref|ZP_06726278.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226837071|gb|EEH69454.1| LysR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|292825313|gb|EFF84059.1| LysR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 293

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 138/298 (46%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L+ F V+AR+ + T AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 1   MKVDWDHLQFFLVLARTKTLTSAARIIGVEHSTVARRIQALELALGTTLFKREASGYELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L     ++    E   +++++      G++RI T    G   L   L EF + YP
Sbjct: 61  FEGLALVPQVEQM----EQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIRYP 116

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL N    
Sbjct: 117 LLTIDLIPVPKMIKLSHREADIVVSIERPTSGPYIITR-LSDYCLKIYGSKNYLANTPPI 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
             +++L +H  + + D +    E +         +     +  + +S L+       G+G
Sbjct: 176 RRLEDLTQHRFVNYIDDLVYSPELY-----CLERLPLKLTANFRSSSILAQQIAVSAGAG 230

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +A+LP ++  D P L  ++ + +  + T +      L++  ++K   +++  +A  ++
Sbjct: 231 LAILPKFLADDKPELETVLAEQVRFNHTFWMLTFVDLQHEPRIKLVWDYLRKQADQYQ 288


>gi|153000164|ref|YP_001365845.1| LysR family transcriptional regulator [Shewanella baltica OS185]
 gi|217973868|ref|YP_002358619.1| LysR family transcriptional regulator [Shewanella baltica OS223]
 gi|151364782|gb|ABS07782.1| transcriptional regulator, LysR family [Shewanella baltica OS185]
 gi|217499003|gb|ACK47196.1| transcriptional regulator, LysR family [Shewanella baltica OS223]
          Length = 295

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 127/298 (42%), Gaps = 15/298 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S T A+++LH++  ++S+QI  LE  +G  LF R  + ++LT++  
Sbjct: 8   LNSLRAFEAAARLQSMTLASKELHVTHGAVSKQIRVLEDYLGFALFVRLHKKVSLTDEAK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L +   +L+    KP   L I     L  N L   +++F   +P + +
Sbjct: 68  RYLPHVQAALQTLSSATSDLRRQPSKPQ-TLAINVLPSLTINWLIPRMEQFKSRHPHLYV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L + +  +D S    D AIR    I   ++ I  KL+   +    AP       +  +I
Sbjct: 127 DLSIGDFAVDFSQGRYDIAIRSCTAIPKGANYI--KLMDEDLCLVCAPSL---APKLQNI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++  H  +      P+  E   W   V   + + +     V  +  + Q    G G AL
Sbjct: 182 EDI-NHVTLLKHTTRPELWEY--WAEKVGLTLTQAQ--TFGVEHFYMLSQAAASGMGAAL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +P + +++   N +LV   +   T  +  Y   P++     K +AF +++      ++
Sbjct: 237 IPRFFIEEQLANGSLVIPFDAPFTSPYRYYLLTPKSPSLPLKAQAFIDWLLEVFAPYR 294


>gi|56698072|ref|YP_168443.1| LysR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56679809|gb|AAV96475.1| transcriptional regulator, LysR family [Ruegeria pomeroyi DSS-3]
          Length = 292

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 119/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  Y VAR G+ + AAE L +  +++ R I  +E  +G+KLF RHARG T TE G
Sbjct: 3   NWDEVRTAYQVARMGTVSGAAEVLGVHHATVIRHIDAIEARLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       L+      SG+L + +   L   L+   L  F   +P + 
Sbjct: 63  LDLLRVAQATDDQFSQLVGRLKGVGDDVSGELVVTSLEALAP-LVVPVLGAFQRKHPGLI 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +   +   +    A  AIR  +       + +  +   +  YA+  Y+         
Sbjct: 122 VRYLTGARLFRLEYGEAHVAIRAGRVPDQPDNVVQPFIDQEVGLYASRGYVARRGMLKGD 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H  +   D   +      WL    R          + +   S       G+GI  
Sbjct: 182 ADLKNHEFVGSDDENSRAPFHI-WL----RQNVPAEAISFRCSDTYSAGHAVRAGAGIGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  +    +P+L+ +   +   +  ++      L  T K++ F  F+   AR+W
Sbjct: 237 VSRWAAARDPDLIEMHPALEEWAGKLWLVTHVDLHRTPKVQTFLKFLKQAAREW 290


>gi|77361788|ref|YP_341363.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76876699|emb|CAI87921.1| putative transcriptional regulator, LysR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 298

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 134/287 (46%), Gaps = 5/287 (1%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++V + VAR G+ T AAE L++  S++ R+I+ LE  +  +LF+RHARG   TE G
Sbjct: 7   DWQDVKVAFEVARLGTLTAAAEALNVHHSTVLRRINNLEKNLNTRLFHRHARGYKATETG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +KL      +   LE    ++  +     G L + T      ++L    ++F  L+P +Q
Sbjct: 67  AKLFSTAQVIDSSLEQLHNDIAAADSTLRGSLLLTTVSGFM-DVLGDVCEQFQALHPQVQ 125

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++IL+ K + +    A  A+R          I + L  ++   YA   Y+     P S+
Sbjct: 126 LEMILEQKRLRLDHGQAHIAVRAGPRPDEGDYIAQHLAQLNSGLYANQRYINKYGMPKSL 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HN I+        +  F W   VD+ I  P+I  L+V+      +  + G GI  
Sbjct: 186 SDLQQHNFISGVAGFNARVPYFEW---VDQHIAAPQIK-LRVSETSEATRAVIKGLGIGG 241

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           L   +     NLV I+ + +     ++      +  T K++AF   +
Sbjct: 242 LQHNVAAQYANLVPILSNELIWCTDIWLVTHHLVHRTAKVQAFSQLL 288


>gi|325921602|ref|ZP_08183443.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325922865|ref|ZP_08184589.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325923844|ref|ZP_08185453.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325545678|gb|EGD16923.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325546658|gb|EGD17788.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325547913|gb|EGD18926.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 301

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 124/276 (44%), Gaps = 6/276 (2%)

Query: 20  FTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLET 79
            T AAE+L ++++ +S+Q++ LE E    L  R  R +  TE G   ++  + +    + 
Sbjct: 21  LTAAAERLGITKAVVSQQVARLERECRTSLLVRTTRKVRTTELGQAFYQRCAAILRDTDD 80

Query: 80  TQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDY 139
               L +++ +PSG LR+   +D G  ++   +  F   YP  ++  IL ++ +D+    
Sbjct: 81  AFDALTDTAAEPSGLLRLTAPLDYGVRVVVPAIAAFTRRYPACKVDAILSDQTLDLMTAN 140

Query: 140 ADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIP 199
            + AIR+   +  SSL  RK+        A            + Q++     +   +   
Sbjct: 141 IELAIRVGW-LAESSLQARKIGAFRQLLVAPSTMTTQLAGLTAPQDIAALPFV--ANTAL 197

Query: 200 KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLV 256
           +  + +++      P        + +++ L++ +    G+GI++LPDY+V D+     L+
Sbjct: 198 RDHQRWHFAHATHAPQSVDVQPGIFLDATLAVREAVCQGAGISVLPDYVVADDLAAGRLL 257

Query: 257 RIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
            ++     PS  ++  +P       K++AF + +  
Sbjct: 258 HVLPQWQLPSGGIHAVFPATRFRPAKVRAFVDLLLA 293


>gi|317404166|gb|EFV84610.1| hypothetical protein HMPREF0005_04437 [Achromobacter xylosoxidans
           C54]
          Length = 302

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 121/293 (41%), Gaps = 8/293 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F  V   G F+ AA  L++ +S +SR+++ LE  +G++L  R+ R ++LT  G 
Sbjct: 8   LDDLLLFTEVVEKGGFSAAARVLNMQRSKLSRRVAELEARLGLRLLQRNTRRVSLTPMGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +++     +  +  +           PSG LR+     L   LL   +  F L +P +++
Sbjct: 68  QIYVHALAMAREARSAFDLAAAMGDTPSGLLRMTAPSALAVTLLGELVARFCLQHPGVRV 127

Query: 125 QLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L   ++ ID+  +  D A R     +  S L+ R+L  + +   A          P   
Sbjct: 128 LLDTRDQVIDLVGEGYDLAFRAQGASLTDSRLVARELAPVPLILVA--APAMARAAPRHP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L+   L+            F   A     I E R  CL  N   ++ +    G G+AL
Sbjct: 186 RDLNALPLLAHATQDSPQSWHFVGPAGEAESI-EFRPRCLSSN-LAALREMARAGLGVAL 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP Y+   +    +L +++         +Y   P        L+ F +F   +
Sbjct: 244 LPHYLCAGSLAKGDLAQLLPAWRAAPARIYAVMPARRGAPLALRRFLDFAAAE 296


>gi|293603597|ref|ZP_06686018.1| transcriptional regulator [Achromobacter piechaudii ATCC 43553]
 gi|292818033|gb|EFF77093.1| transcriptional regulator [Achromobacter piechaudii ATCC 43553]
          Length = 325

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 77/318 (24%), Positives = 130/318 (40%), Gaps = 33/318 (10%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + + +F  VA+  SF+ AA  L +  S++SR+I+ LE  +G++L  R+ R L LTE G+
Sbjct: 8   LNDIALFVEVAKRKSFSMAARALDMPTSTLSRRINELERAIGLRLINRNTRRLDLTEAGA 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R    +  +      +L   S  PSG LR++    L   LL   +K+F   YPD++ 
Sbjct: 68  AYMRRCQGLIDEARLAHEQLLSLSGGPSGNLRVSMPYSLAIWLLPETIKDFTDRYPDVEC 127

Query: 125 QLILDNKDI-DISMDYADCAIRLRKPIQSS----------------------SLIQRKLV 161
           +  L      D      D  +R  +    S                        + ++LV
Sbjct: 128 EFDLSMMTASDAQGTPFDVVLRFGRNADFSVTPTEAINGNGDSNGGRSARPGGAVVQELV 187

Query: 162 TIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS 221
           ++  H YA+  YL+   EP +  +L +H  +     I      +  L         P   
Sbjct: 188 SLDNHLYASDRYLQRHGEPKTPADLTQHQCL--RTTIDDAHSHWT-LHKGAISEVVPVSG 244

Query: 222 CLQVNSYLSIMQYCVLGSGIALLP-----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEA 276
            L  N+         L   I  +P     D I+K N +L R++        +++  YP +
Sbjct: 245 HLAANNMSIAGTLAGLDLAITRMPNCQALDPIIKRN-SLRRVLPGWSVDPISIFVVYPSS 303

Query: 277 LKNTGKLKAFRNFIFLKA 294
           ++   K +AF +FI  K 
Sbjct: 304 IQ-PAKTRAFMDFIKPKL 320


>gi|228952781|ref|ZP_04114853.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229079600|ref|ZP_04212136.1| Transcriptional regulator, LysR [Bacillus cereus Rock4-2]
 gi|228703714|gb|EEL56164.1| Transcriptional regulator, LysR [Bacillus cereus Rock4-2]
 gi|228806900|gb|EEM53447.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 300

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 135/305 (44%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVLNYLLPLTILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLRNELDIGITF-LPVQDKEIISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F   +   
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFIEQLKST 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|300696839|ref|YP_003747500.1| LysR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299073563|emb|CBJ53083.1| Transcriptional regulatory protein LysR family [Ralstonia
           solanacearum CFBP2957]
          Length = 322

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 123/277 (44%), Gaps = 12/277 (4%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
             L ++ +++S+ ++GLE  +G++L  R  R L LTE+G    R        L+     +
Sbjct: 31  RVLGITSAAVSKNVAGLEKALGVRLMNRTTRTLNLTEEGRAFLRQARVALDALDAAIDTI 90

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
               V PSG++RI+T+   G+  L   L   L  YP + +++  D++ +D+  D  D AI
Sbjct: 91  AAQRVVPSGRVRISTSWAFGREQLMPALPGLLSRYPALSVEVDFDDRIVDLVRDGYDLAI 150

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITF----GDLIPK 200
           R    I  S+L+ R +  +++   A+P YL     P + Q L  H LI      G + P 
Sbjct: 151 R-GGSIPDSALVSRPIFRLNLVLVASPDYLARHGVPQTPQALRSHRLIARRFLGGAVAPW 209

Query: 201 CMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVR 257
                N   T   P      + L +++  S++Q    G GIA +  ++  ++     L  
Sbjct: 210 GFSAENGSFTTFDPAD---AAVLTLSAPESVVQAACSGVGIARVGVHLAWEHLLSGALKV 266

Query: 258 IMEDVITPS-FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           ++     P  + +   YP       +++   +++   
Sbjct: 267 VLHRYHQPGNYEMVMQYPHRALMAPRVQVTLDYLLEA 303


>gi|126441668|ref|YP_001057178.1| transcriptional regulator [Burkholderia pseudomallei 668]
 gi|167908964|ref|ZP_02496055.1| Transcriptional regulator [Burkholderia pseudomallei 112]
 gi|126221161|gb|ABN84667.1| transcriptional regulator [Burkholderia pseudomallei 668]
          Length = 322

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 127/300 (42%), Gaps = 12/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G 
Sbjct: 7   LSALETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I
Sbjct: 67  LYLATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +  +DI  +  D A+R+      S ++ + + +      A+P YL     P +  
Sbjct: 127 ELSLSDHYVDIVGEGFDLALRMGNYDLPSQIV-KPIGSNRGLLCASPGYLARRGRPTAPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +    P     + +     R   EP+   L  + Y   +   + G+G+   
Sbjct: 186 DLARHDCVIYRH--PTLANTWTFERGGVRARLEPK-GPLVTDDYGLALAAALDGAGVLPC 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P + V D      LV ++ D    S +     +   YP + + + K++     +  +  D
Sbjct: 243 PQWSVVDALEAGRLVPLLVDWRFESASFGEDRICAAYPSSRRGSTKIRRLVERVQARLAD 302


>gi|83943385|ref|ZP_00955844.1| putative transcription regulator protein [Sulfitobacter sp. EE-36]
 gi|83845617|gb|EAP83495.1| putative transcription regulator protein [Sulfitobacter sp. EE-36]
          Length = 295

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 119/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +  +RVF  VAR G F  AAE L  + +S+S  I   E  +G++LF R +R + LT  G
Sbjct: 5   SFGDIRVFVEVARRGGFRAAAEHLQQAPASVSEAIQRFEDRLGVRLFERSSRSVVLTRAG 64

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            +L+  +      LE    ++     + +G LR++     G   L   +  F   +P + 
Sbjct: 65  EQLYDKSLPAIVDLEGALDDIHAQKDEVAGTLRLSAPYSAGPFFLDDLVARFATAFPTVD 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++I D+K +D+     D AIR    +   +        + M    +  YL     P   
Sbjct: 125 VEVIYDDKKVDLLTSGIDAAIRSNTLLGPDTHAVSVGPELEMTIVGSAEYLAGKGTPAHP 184

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++ KH+ I +       +  + +         +P+   +  N   S++ Y   G G+A 
Sbjct: 185 RDILKHDAICYAFGSGAHLAPWGFDGPEGLYTIQPK-PRMVANDMRSLLTYAQQGLGLAY 243

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           L   I   +     L  ++   +         Y      T +L+AF +    KA
Sbjct: 244 LYREIALPHLEKGGLTEVLSGHVGQLPRYSLNYRSKRNMTRRLRAFVD--MAKA 295


>gi|254439800|ref|ZP_05053294.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
 gi|198255246|gb|EDY79560.1| LysR substrate binding domain protein [Octadecabacter antarcticus
           307]
          Length = 296

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 123/289 (42%), Gaps = 6/289 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DW  LR F   A + S + AA +L L+Q ++SRQ++ LE  + + LF R  RGL LT+
Sbjct: 7   RLDWTHLRSFLATAETASLSAAARKLGLTQPTLSRQVAALEDNLSLLLFERVGRGLQLTD 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G +L     ++        +         +G +RI  +       L   + E     P 
Sbjct: 67  AGRELLAHVQDMGGAAHRVAMTAAAQRSDINGTVRITASDIYSSTYLPKMIVEVRKRAPG 126

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + ++++  N   D+    AD AIR  +P +   L+ R +     H YAA  YL     P 
Sbjct: 127 LVVEVVATNDISDLMRREADIAIRHVRP-EQPDLVARLVREATGHFYAAKIYLDRRGRPQ 185

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  EL  H+ I++GD+     +   +L  +D P+          N  ++  +    G GI
Sbjct: 186 TRTELGTHDWISYGDI----GQMVEYLVALDIPLTADAFKVGSQNGIVA-WEMARAGLGI 240

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
             + D +      + RIM D +   F V+      +  + +++   + +
Sbjct: 241 CPMDDTVGDQVEEMERIMGDDLKVMFPVWLVTHREVHTSPRIRLVFDIL 289


>gi|170737571|ref|YP_001778831.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819759|gb|ACA94341.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           MC0-3]
          Length = 301

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 109/289 (37%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 11  QALRAFESAARLASFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGVTLTVDGQC 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 71  LYEAVRLSLDTLRGATATLRARRE--HGALTIVTDFGFATYWLMPRLAGLKRVMPDVDVR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+ D A+        S    R L    +    +P +    R       
Sbjct: 129 VVTS-QDYDAQRDHGDIAVLFGDGHWPSCTAAR-LFPESVTPVCSPSFRDAHRGVARADH 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    ++                +  NSY  ++   +LG G+AL  
Sbjct: 187 LLALPLLHVQPTRPERWLSWSGWFDAHGLESPAATRGVTFNSYALVIHAALLGEGVALGW 246

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +   +  LV++++  +  S   +   P           FR ++ 
Sbjct: 247 APLVDELVASGQLVKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 295


>gi|152989123|ref|YP_001347677.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964281|gb|ABR86306.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 318

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 123/297 (41%), Gaps = 13/297 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++  ++  V  SGSF+ AA +  L+ S+++R++  LE  +G  L  R    +  T  G  
Sbjct: 8   EQFVLYLDVLDSGSFSAAARKHPLTPSAVARRMDALERALGSTLLVRTTHAVRATPAGLA 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI   +  G+  L   + +FL   P + +Q
Sbjct: 68  FADRARRIVTELRLARAEAVSLSTAPQGLIRIDAPVPFGRRHLAPAIADFLKANPGLDVQ 127

Query: 126 LILDNKDIDISMD---YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L    ID+  +     D  +R   P+  S L+   L  +     A+P YL+    P S
Sbjct: 128 LRLIGSFIDLQGEHLGEVDLVLRAG-PLPDSRLVATSLAPMVRVVCASPEYLREHGVPAS 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +H  I + +L P     F     +      P+ + L  N+  +++   + G GIA
Sbjct: 187 PGELPEHAGIDWDNLSPPYAWRFQHDGKLQH--LRPKRARLATNNAEAMVDAALAGLGIA 244

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLK 293
            LP ++  +      L  +  D   P+     +Y    E  + + + +    F+  +
Sbjct: 245 HLPTWLCSEYLLRGELQALFCDDGLPAAEPTCIYALRLE-REASSRTRLLLAFLRER 300


>gi|228985520|ref|ZP_04145677.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774285|gb|EEM22694.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 300

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 134/305 (43%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H++E  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVEQARSAIQDLNGLQQGSLTIGALLTVVNYLLPTAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q    I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLRNELDIGITF-LPVQDKETISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F   +   
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQSIKI--ENPTPTIEIGLIYRKDKYMCAATREFIEQLKST 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|221638431|ref|YP_002524693.1| LysR family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|221159212|gb|ACM00192.1| Transcriptional regulator, LysR family [Rhodobacter sphaeroides
           KD131]
          Length = 296

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 112/297 (37%), Gaps = 6/297 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      L     +AR GSF  AA  L +S +++S  I  LE   G++LF+R  R + LT
Sbjct: 1   METGLKGLEAVLAIARKGSFRAAALDLGVSTTALSHTIGRLEASFGVRLFHRTTRSVALT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G       +    ++      ++     P+G LRI  ++  G+  +   +  FL  YP
Sbjct: 61  EAGRDFVARIAPALTEIRAAMDTVRSQRATPAGMLRINASVQAGRA-VAPLVLAFLRRYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +Q+ L+ + + +DI  +  D  IR    +    +       +     A+P +L    EP
Sbjct: 120 KMQVDLVTEGRLVDIVAEGFDLGIRPTDLVPRDMIALSLGRPVRHAVVASPDWLARHPEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  +LD    +         +            +       L V+         + G+G
Sbjct: 180 RSPADLDPGQCLRVRLPNGALLRWP--FEKDGLALPFEAKGRLSVDEPAIARAAVLDGAG 237

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I    +  V ++     ++R++ED           Y      +    AF + +  +A
Sbjct: 238 IGYFIEADVAEDIANGRMIRLLEDWTPNRPGFSLYYSGRRNPSAGFTAFLSLMRERA 294


>gi|114327821|ref|YP_744978.1| LysR family transcriptional regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315995|gb|ABI62055.1| transcriptional regulators, LysR family [Granulibacter bethesdensis
           CGDNIH1]
          Length = 315

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 130/296 (43%), Gaps = 12/296 (4%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D ++ F  V R+G FT AA +    +S++S Q+  LE  +G++L  R  R   LT++
Sbjct: 29  MKLDPIQTFVEVVRAGGFTAAARRTGTPRSTVSLQVRALEETLGVRLLKRSTRSFALTDE 88

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+   S     L     +LQ       G +R+    D    LL   +  F   +  +
Sbjct: 89  GQRLYDKASGPVDVLARALDDLQAGDGVLGGLIRLTVPADFPTALLASAITSFTQAHTAV 148

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           + Q++  N  +D+  D  D A+R+     + + I+R+L+ I    YA+  +LK    P +
Sbjct: 149 RFQIMWTNTVMDLVEDNIDIAVRVGAN-PAQTAIERRLLDIEWAFYASASWLKRKGRPEN 207

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I E+   + I+   ++   +E  + L  V  P G      ++V+S+       + G G+A
Sbjct: 208 ISEV--EDFISPQPILRAYLEK-HVLGGVSLPTG-----AIEVDSHAMARDLMLNGFGVA 259

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           LLP  + +D     N   ++         +   +P       +++AF + I    R
Sbjct: 260 LLPQGLCQDAVMTGNAEPLLPHAGLRPTRLNLTFPNRADMVPRVRAFADHICAHFR 315


>gi|160874791|ref|YP_001554107.1| LysR family transcriptional regulator [Shewanella baltica OS195]
 gi|160860313|gb|ABX48847.1| transcriptional regulator, LysR family [Shewanella baltica OS195]
 gi|315267029|gb|ADT93882.1| transcriptional regulator, LysR family [Shewanella baltica OS678]
          Length = 295

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 127/298 (42%), Gaps = 15/298 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  S T A+++LH++  ++S+QI  LE  +G  LF R  + ++LT++  
Sbjct: 8   LNSLRAFEAAARLQSMTLASKELHVTHGAVSKQIRVLEDYLGFALFVRLHKKVSLTDEAK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L +   +L+    KP   L I     L  N L   +++F   +P + +
Sbjct: 68  RYLPHVQAALQTLSSATSDLRRQPSKPQ-TLAINVLPSLTINWLIPRMEQFKSRHPHLYV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQ-SSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
            L + +  +D S    D AIR    I   ++ I  KL+   +    AP       +  +I
Sbjct: 127 DLSIGDFAVDFSQGRYDIAIRSCTVIPKGANYI--KLMDEDLCLVCAPSL---APKLQNI 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           +++  H  +      P+  E   W   V   + + +     V  +  + Q    G G AL
Sbjct: 182 EDI-NHVTLLKHTTRPELWEY--WAEKVGLTLTQAQ--SFGVEHFYMLSQAAASGMGAAL 236

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +P + ++D   N +LV   +   T  +  Y   P++     K +AF +++      ++
Sbjct: 237 IPRFFIEDQLANGSLVIPFDAPFTSPYRYYLLTPKSPSLPLKAQAFIDWLLEVFAPYR 294


>gi|160901335|ref|YP_001566917.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366919|gb|ABX38532.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 324

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 125/296 (42%), Gaps = 12/296 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            LR F  VAR  +F  AA++L L+QS++SRQI  LE EVG+ LF RH R + LT  G++L
Sbjct: 21  HLRAFLAVARHLNFRAAADELSLTQSAVSRQIQSLEDEVGVPLFLRHTRAVELTGAGAQL 80

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  +    +++ +  +++++  +    + I T        L   L+ F   +PDI I++
Sbjct: 81  LRSVAPALEQIDASVRQIRQTVGRK--SVAITTWASFAAMWLIPRLESFQRAWPDIDIRI 138

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
              +  +D+     D A+R  +         ++L    +   A+P  L       +  + 
Sbjct: 139 DTSDTVMDLDTTDVDLALRYGRAGDGWP-QAQRLFGEQLAVVASPRLLAGGPPLRTPADA 197

Query: 187 DKHNLITFGDLIP----KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++ LI  GD       + +    W         +P    L  N    I+Q  + G G+A
Sbjct: 198 ARYTLIETGDAHRMPQLEWLGWQRWFGVQGCDQLQPP-RWLYFNYAHQIVQAALAGQGLA 256

Query: 243 LLPDYIVKD---NPNLVRIMEDVIT-PSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +    +V D     +LV ++           +           ++ AF  ++  +A
Sbjct: 257 IARLPLVADALAAGDLVEVLPAHRLESPLAYWLIVGPRSAARPEVAAFCRWLQEQA 312


>gi|332868893|ref|ZP_08438470.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
 gi|332733041|gb|EGJ64242.1| LysR substrate binding domain protein [Acinetobacter baumannii
           6013113]
          Length = 326

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G
Sbjct: 21  SFDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLG 80

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    +V  ++E  +  L +   +P G ++++    +    ++  L +FL  YP ++
Sbjct: 81  QEFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVE 140

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R    
Sbjct: 141 ISLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RTIKH 199

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     I+ G      +     +      +  P    ++ N    +    + G GIA
Sbjct: 200 YSELQDFPSISLGTQKQNYIWHLCNIRN-GESVDVPYQPRIKSNDLAGVYYAVMDGLGIA 258

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP   V+       LV I+ D  +    +   Y         ++     +  + R
Sbjct: 259 DLPFLTVESEIRKGTLVHILPDWKSNIGMLQLVYVSRKGQRLVVEKLIETLIDELR 314


>gi|260768705|ref|ZP_05877639.1| hypothetical protein VFA_001760 [Vibrio furnissii CIP 102972]
 gi|260616735|gb|EEX41920.1| hypothetical protein VFA_001760 [Vibrio furnissii CIP 102972]
          Length = 303

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L +F  V + G  T AA+ L L +SS+SR+I  LE    +KL  R AR  TLTE G 
Sbjct: 4   LEALTLFQHVVQLGGITQAADFLSLPKSSVSRKIKELEDHYNVKLINRSARHFTLTEAGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             H  + +V   ++  + E+     + SGK+R+   +      L   L+EF   YP IQ+
Sbjct: 64  IFHAHSRDVLTHVDVLEQEMAAYGQEMSGKIRLLC-VSPMIKCLGELLREFCKAYPHIQL 122

Query: 125 QLILDNKDID-ISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +L         I     D  ++L +P+  S+L+ +++  ++   YA+P YL     P   
Sbjct: 123 ELHAQEVVERTIPKRRFDLLVQLGQPVI-SNLVAQQIGAMYADYYASPAYLAEFGTPKLP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L +H LI     + +    F W  +  R +   R +   V+S          G GIAL
Sbjct: 182 EDLLQHRLIF--REMSQDEHKFWWFESPTRKLDLGRANMTIVDSPEMTFTLATQGFGIAL 239

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           LPD  +        LV +          +   Y +      +++   +++
Sbjct: 240 LPDIQLAQAIKEKQLVPLFNQQHRRRVPINLVYHDRQHIPRRVRLLIDYL 289


>gi|239503882|ref|ZP_04663192.1| LysR substrate binding domain protein [Acinetobacter baumannii
           AB900]
 gi|193078626|gb|ABO13668.2| putative transcription regulator protein [Acinetobacter baumannii
           ATCC 17978]
          Length = 324

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G
Sbjct: 19  SFDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    +V  ++E  +  L +   +P G ++++    +    ++  L +FL  YP ++
Sbjct: 79  QEFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVE 138

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R    
Sbjct: 139 ISLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RTIKH 197

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     I+ G      +     +      +  P    ++ N    +    + G GIA
Sbjct: 198 YSELQDFPSISLGTQKQNYIWHLCNIRN-GESVDVPYQPRIKSNDLAGVYYAVMDGLGIA 256

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP   V+       LV I+ D  +    +   Y         ++     +  + R
Sbjct: 257 DLPFLTVESEIRKGTLVHILPDWKSNIGMLQLVYVSRKGQRLVVEKLIETLIDELR 312


>gi|332143224|ref|YP_004428962.1| putative transcriptional regulator, LysR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553246|gb|AEA99964.1| putative transcriptional regulator, LysR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 294

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 128/284 (45%), Gaps = 10/284 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L+VF  V  SGS + AA +LH++ S+IS+Q+  LE ++G+ LF R+ R L+LTE G 
Sbjct: 6   LRSLQVFISVTDSGSMSVAARELHMTVSAISQQLRKLEHDIGLSLFNRNTRSLSLTEAGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             ++ + ++    E  Q +++     P+GK+ I      G  LL   LK+    +P I I
Sbjct: 66  IYYQTSKQMLETAELAQQKIESLQDDPTGKINIIAPEGFGGGLLSEPLKKLCEEFPKITI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++  DI    AD  +    P+  ++    +L T       +  +        S  
Sbjct: 126 SLTITDEPKDIIASSADLVLCFA-PVSDTNFSSLELATWKRILCVSARHPLANEALSSPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L+ H  IT   +    M+  +          E     + VNS  ++++    G G A+L
Sbjct: 185 QLNSHAYITHRHIEDYVMQHDS------EGEYELDTQRIDVNSMQTLIKLTQDGVGYAVL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKA 285
           P+  V+    +  + ++  +   P +TVY   P+      K+ A
Sbjct: 239 PEPEVRHLLKSGEMKQLFTEWELPGYTVYAVTPKRELVPAKISA 282


>gi|26989671|ref|NP_745096.1| LysR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24984559|gb|AAN68560.1|AE016488_4 transcriptional regulator, LysR family [Pseudomonas putida KT2440]
          Length = 296

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 118/296 (39%), Gaps = 11/296 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            D L +F   A  GSFT AA +  L     +  +  LE E+ ++LF R  R L LT +G 
Sbjct: 4   LDDLGIFVRSAALGSFTAAAHEADLLPGQAAEAVKRLERELDVRLFARTTRSLRLTAEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +           L   +  L++ S + SG L++A   DLG+N+L   L  F   +P + +
Sbjct: 64  QYLPSALIALEALRHGRDNLRQESAQLSGTLQVAAPSDLGRNVLLPWLTAFRREHPQLNL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHM-HAYAAPHYLKNCREPLSI 183
           +L L ++  D+  D  D AIR       ++ I   L   +     A+P YL       + 
Sbjct: 124 RLFLSDQIADLFRDPVDIAIRYGLN-ADANYIALPLAPWNRKVLVASPEYLARQGTVQAP 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +H  + +        +      TV           L  +      ++ V G GI  
Sbjct: 183 GDLLEHQCLLYMQQGRVYDKWQLGTQTVQ------VRGALLCDDADIARRWAVAGEGITY 236

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
                V D+     LV +M+D   P+  +    P   + +  ++    ++  +  +
Sbjct: 237 KSWLDVSDDVLAGRLVVLMQDHPGPAMPLSLVCPHRKQLSPAVRHLHAWLSSRFAE 292


>gi|317054341|ref|YP_004118366.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
 gi|316952336|gb|ADU71810.1| transcriptional regulator, LysR family [Pantoea sp. At-9b]
          Length = 302

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 125/300 (41%), Gaps = 11/300 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           MS D   L     VA++G F  AA  +  + S +S  +   E ++G++LF R  R + LT
Sbjct: 1   MSLDIALLHAVVAVAKAGGFREAARMIGSNPSRLSDAVRRAEQQLGVRLFNRTTRTVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L        ++++     L      P G LR+   +   + +L   +  FL  YP
Sbjct: 61  EAGRALMARLLPAMNEVDAALDALNRFRDTPGGTLRLNVPVSAARLVLPAIVPGFLARYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVT--IHMHAYAAPHYLKNCR 178
           DIQ++++ ++   DI  D  D  IR    ++   ++   +        A AAP YL    
Sbjct: 121 DIQLEVVAESNVQDIFRDGCDAGIRYDDHLEQD-MVALPIGPRIQRFAAAAAPGYLAQYG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSI---MQYC 235
            P   +EL +H  +  G      M ++ +    +    +P+   L  +   ++   +   
Sbjct: 180 TPQHPRELMQHRCLP-GRYATGVMAEWEFSRAGETVRLQPK-GPLTCSIGAAMDLTVDAA 237

Query: 236 VLGSGIALLP-DYI--VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           + G G+  L  +++    D+  L  I+ +       ++  Y +       L+AF +++  
Sbjct: 238 IAGVGVMYLFEEWLRPALDSGQLQPILTEWWLSFSGLWLYYNDRRLIPTPLQAFIDYVRE 297


>gi|229161381|ref|ZP_04289365.1| Transcriptional regulator, LysR [Bacillus cereus R309803]
 gi|228622087|gb|EEK78929.1| Transcriptional regulator, LysR [Bacillus cereus R309803]
          Length = 300

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 131/295 (44%), Gaps = 14/295 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L+ F  V++   FT AAE+L++SQ S+S+QI  LE E+G+ LF R  + ++LT
Sbjct: 2   IPIELRQLKYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHELGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L   T  ++ ++E  +  +Q+ +    G L I + + +   LL   L  F  LYP
Sbjct: 62  AAGKILLLHTKTIFREIEQARSAIQDLNGLQHGSLTIGSLLTVVNYLLPPALLNFNKLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   ++   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIVSIPLYKSELTLVVPTGHTLTE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +            L++++  S++Q    
Sbjct: 181 RSHISIVELQDYPLI----LLPKNFFLTELITSHCHKFDFTLKPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
           G GI +LP    D++   N   ++I +   TP+  +   Y +        +AF  
Sbjct: 237 GMGITVLPKPYIDFLQNTNIQALKIKD--PTPTIDIGLIYRKDKYMCAATRAFIE 289


>gi|167586649|ref|ZP_02379037.1| transcriptional regulator, LysR family protein [Burkholderia
           ubonensis Bu]
          Length = 305

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 118/294 (40%), Gaps = 6/294 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           D + L  F  V   G F  A   L++ +S +SR+I+ LE  VG++L  R  R  T+TE G
Sbjct: 7   DLNDLYYFVQVVDHGGFAPAGRALNMPKSKLSRRIALLEARVGMRLIQRSTRRFTVTEVG 66

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              +     +  + +     +     +P G +R+   + L  +L+   +  F+   P ++
Sbjct: 67  QTYYAHCRAMLVEADAADEAIALLHEEPRGIVRVTCPVALLDSLVGAMIAAFMNACPRVE 126

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L   N+ +D+  +  D A+R+R  P++ S L  R L        A+P  L+    P  
Sbjct: 127 IHLEATNRRVDVVGEGIDVALRVRPPPLEDSDLALRVLAERGQCLVASPALLRERGMPAV 186

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +   +  G   P+    +                 L     L++    V G G+ 
Sbjct: 187 PADLARLPSLDLG--APQAAHVWRLQGPDGARAEIHHQPRLVTGGMLALRAAAVAGVGVV 244

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP  +V+D      L  ++ D       V+  +         ++A  +F+  +
Sbjct: 245 QLPTMMVRDAIAQGALTAVLPDWAPRREIVHAVFASRRGLLPAVRALLDFLAQR 298


>gi|312961058|ref|ZP_07775563.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
 gi|311284716|gb|EFQ63292.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           WH6]
          Length = 304

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 123/296 (41%), Gaps = 8/296 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L  F   AR  SFT AA +L+++Q +ISRQI  LE  +   LF R  R ++LT  GS
Sbjct: 9   LNSLVAFEAAARHLSFTLAARELNVTQGAISRQIRLLEDYLSTALFTRTTREISLTPSGS 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +    +   ++      +     + + ++ + T+  +    L   + EF     +I +
Sbjct: 69  QYYESVRDTLQQIAHATAGM--LHWQGARQVTVVTSTAMASLWLLPLVSEFQRQNEEIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I  ++  D S    D A+         ++    L    +    +P +L    E  +++
Sbjct: 127 RIIATDQVSDFSRLDCDLALYYCS-TPPKNMKVTPLFNEEIFPVCSPAFLAQHPEIHTLE 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L     + F D     +    W   +     EPR   + +NSY  ++Q  + G GIAL 
Sbjct: 186 QLGACTWLWFEDPQRDWIGWKEWFQRLGYQAPEPR-RRININSYSMLIQSALAGQGIALA 244

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGK-LKAFRNFIFLKARD 296
              ++ ++    NLVR  +  +          P+      + ++ FR ++     +
Sbjct: 245 WSGLLSNHLQTGNLVRPTQTTLCTDAQFCLLEPQGRPPHRQSVERFRQWLMAHLAE 300


>gi|206562968|ref|YP_002233731.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039008|emb|CAR54971.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 302

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R++  V   G+ + AA  L + Q ++S +I  LE  +G +L  R AR L  T
Sbjct: 1   MDL-LATMRIYVRVVERGTMSGAARDLDMGQPAVSERIDKLEKFLGTRLLMRSARTLNCT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   +  + E+    E T   + ++     G +R+A     G+ ++   L +    YP
Sbjct: 60  EEGRIFYARSKELLEAAEDTIAAVSKTENTLVGTIRLAAAQCFGEVVMPQALMQIRTAYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I L+L++  +D   +  D ++RL + +     +   +  +     AAP YL      
Sbjct: 120 RLHIDLVLNDNIVDPVTEGVDISMRLGQ-LGDGGFVAHPIGEVGRVLVAAPSYLDRFGPI 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            +  +L  H  I    +          L   D+ +   RI + +  + +  +    V G 
Sbjct: 179 ETKSDLASHPFIRVKGIFANEQLP---LQDEDKTVEYARIQTVMTTSHWRPMFDTIVAGG 235

Query: 240 GIAL--LPDYIVK-DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI +  LP  I       LV I+     P + +            +++A  + +
Sbjct: 236 GIGVVQLPACITAFQQGKLVEILPRYTIPDYALNALVQAQRPLPPRVRAVVDLL 289


>gi|84386669|ref|ZP_00989695.1| Transcriptional Regulator, LysR family [Vibrio splendidus 12B01]
 gi|84378475|gb|EAP95332.1| Transcriptional Regulator, LysR family [Vibrio splendidus 12B01]
          Length = 302

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 126/297 (42%), Gaps = 16/297 (5%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +   ++ F  VA   SFT AAE L +S+  +SR +  LE  +  KLF+R  R ++LTE 
Sbjct: 5   MNLIYMQTFLSVAEEQSFTKAAEVLDVSKGLVSRHVQRLEETLNSKLFHRTTRSISLTEV 64

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L+    ++       ++ + + + + +G L+I   I+ G+ L +  +  F   YP +
Sbjct: 65  GEELYSKAKQIQLLATEAEMRVLDMTQEVAGDLKITAPIEFGRALCRHIIPTFKQEYPKV 124

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L        I     D A R    + +  +I   L  I      +  Y  +     +
Sbjct: 125 DLILDFGPMKKKIESGDFDIAFRAYDELPND-VIANDLGHIRNVLVCSAGY-ASTNPLAT 182

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATV--DRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            +++ K + I     +    E +N L  +  ++         +  N+Y SI++  + G G
Sbjct: 183 TKDIHKCSFI-----LNSQNERWNQLELINGEQTYHVEVTGSVSSNTYSSILELAMQGIG 237

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL----KAFRNFI 290
           +A LP Y V++      L+ +  +    +  +   Y +      KL    +A + ++
Sbjct: 238 VASLPFYQVEEQLKQGELIHVFPEWSIKAQKLSLIYAQRRVTPQKLVTFNRAVKEWL 294


>gi|261343738|ref|ZP_05971383.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
 gi|282568122|gb|EFB73657.1| transcriptional regulator, LysR family [Providencia rustigianii DSM
           4541]
          Length = 296

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D + LR+F  VA  GSF +AA+ L +  S+ISR I  LE ++  +L  R  R + LT
Sbjct: 1   MRVDLNLLRIFVAVASQGSFANAAKLLSMPTSNISRAIKQLEAQLNCQLIERTTRQMRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           EQG+ L + + ++Y +LE T  ++++   +  G LR+    + G  LL   L +F + +P
Sbjct: 61  EQGALLLKKSHKLYSELEETLQQIRD-PRELCGTLRLTIPSESGSLLLAELLAKFAIEHP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRL-RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            + I        +D+  D  D  +   R  +  S    + L +      A+P  +K    
Sbjct: 120 KLAIHCDTQLVPLDVISDDIDLLLTFHRGDLADSRYHSKLLKSWESVIVASPELIKTTGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P +I +L +   I    L     + + +L    +       S  +VNS +      + G 
Sbjct: 180 PKTISQLSEMPCI--SSLSALHGQPWIFLEKNGQQKKVIVTSQYRVNSGMLASVGAINGL 237

Query: 240 GIALLPDYIVKDN---PNLVRI-MEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           G A+L     +DN     LV I  E++      +   Y      +  +  F +++
Sbjct: 238 GYAILSKEACQDNLQQGKLVEIHFENIQPAPIELRAVYATRRSLSPIVDKFLSYL 292


>gi|84499913|ref|ZP_00998179.1| probable transcriptional regulator [Oceanicola batsensis HTCC2597]
 gi|84391847|gb|EAQ04115.1| probable transcriptional regulator [Oceanicola batsensis HTCC2597]
          Length = 297

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 122/296 (41%), Gaps = 15/296 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
             + LR F    R  SF  AAE+L ++Q ++++Q+ GLE  +G++LF R  RGL+ TE+G
Sbjct: 9   SLNGLRAFSAAGRHLSFRAAAEELGVTQGAVAQQVRGLEDHLGLRLFLREPRGLSFTEEG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
              H   S  + +L      L ++      ++ I+ T       L   L EF   +P I 
Sbjct: 69  RSYHAAVSRAFSQLMDATGALLDTPS----RVTISVTPTFASKWLIPRLAEFTEAHPGID 124

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           +++    + +    D  D A+R  +P   +SL    L    + A  +PH +     P+  
Sbjct: 125 LRITATERVMSFHADGIDIAVRQGRPPFGASLRAELLFPQEIIAVCSPHLVAPEG-PVDA 183

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             L +  L+          + +     +           LQ +     +   + G G+AL
Sbjct: 184 AALSRLTLLH------DAHDLWPQFLGMAFGTVPTLPRGLQFSQTTLSLDAALAGQGVAL 237

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              ++V+ +     LVR ++  +      +   P    +   ++    ++  KAR+
Sbjct: 238 ASRFLVQRDLDAGRLVRAVQAALEGGQDFHALLPRQGASEAAIRV-MEWLKSKARE 292


>gi|146275926|ref|YP_001166086.1| LysR family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|145322617|gb|ABP64560.1| transcriptional regulator, LysR family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 304

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 115/295 (38%), Gaps = 5/295 (1%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + L  F V+ARS S   AA  L+++  ++++++  LE  VG+ L  R +RGL+LT++
Sbjct: 2   ITTEDLIFFRVLARSPSLAEAARSLNVTPPAVTQRLRALEARVGVMLVDRTSRGLSLTDE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  +     ++   +E     L   + K  G LR+A     G+  +   ++ F    P  
Sbjct: 62  GELIATEGMQIIGAMEELAERLASRTNKVRGHLRVAAPYGFGRRHVSPVVEAFAKANPAT 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            I L L +  +    +  D  + +    +S  L+   L        A+P Y+++     +
Sbjct: 122 TITLDLSDNPVRQVTESWDIVVHIGSLPESDRLVT-TLAQNRRILCASPDYIESHEPIRT 180

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            ++L  H+ ++  +            A+  R     R   +  N    +  +   G GI 
Sbjct: 181 PEDLAAHSCLSLRENNEDVTLWRFTHASKGRVTVRAR-PAMSSNDGEIVRDWARAGLGIM 239

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           +  ++ V  +     L  I+ D   PS  V          + +   F   +    
Sbjct: 240 VRSEWDVAADIAAGTLREILPDWSAPSADVVALLHARHGRSRRTAVFLELLRAAL 294


>gi|17545353|ref|NP_518755.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17427645|emb|CAD14164.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 318

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 138/294 (46%), Gaps = 8/294 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             +  F   A +GSF  A   L +S +++S+ ++GLE  + ++L  R  R L LTE+G+ 
Sbjct: 8   RAILSFVQAATTGSFAAAGRVLGISSAAVSKNVAGLEKALKVRLMNRTTRTLQLTEEGAV 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
             R        L+     +     +P+G++RI+T+   GQ  L   L   L  YP + + 
Sbjct: 68  FLRQARLALEALDVAVDAVAAKRDEPTGRVRISTSAAFGQQQLMPMLPGLLARYPGLSVL 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           +  D++ +D+  D  D A+R    ++ S+L+ R +  ++    A+P YL +   P  I++
Sbjct: 128 VDFDDRIVDLVRDGYDLALR-GGHMRDSALVSRPVCRLNKILVASPGYLAHHAVPRMIED 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           L +H L+     +   ++ +++ A       +     + L +++  ++++  V G GIA 
Sbjct: 187 LPQHKLVA-RRFLGGAVDAWSFQAQDGSITTLDPSDTAVLTLSAPEAVVEAAVDGIGIAQ 245

Query: 244 LPDYIVKDN---PNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +  ++  D+     L  ++   + P ++ +   YP       +++   +++   
Sbjct: 246 VGVHLAWDHLVSGKLKVVLRRQLHPGTYEMAIQYPHRALIAPRVRVVVDYLLEA 299


>gi|88800156|ref|ZP_01115725.1| putative transcriptional regulator [Reinekea sp. MED297]
 gi|88777137|gb|EAR08343.1| putative transcriptional regulator [Reinekea sp. MED297]
          Length = 305

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 122/289 (42%), Gaps = 7/289 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           + DW +   F V+AR+GS   AA+ L +SQ ++SR +  LE  +G  LF R  RGLTLT 
Sbjct: 3   NTDWQQWHFFTVIARTGSLNQAADALGVSQPTLSRHLQSLEARLGQNLFDRSTRGLTLTA 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+ L     ++    +  +          SG++R++    + Q  L   L  F+   P 
Sbjct: 63  FGASLMEGCQQMEQTAQALERRASGQDQALSGRVRLSVNEMIAQYYLPNILPAFMDANPQ 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + +++ + N+   +    AD A+R+  P Q   LI R L  I +  YA+  YL     P 
Sbjct: 123 LSVEIEVTNRASSLDKRDADIAVRMFPPTQ-LDLIARHLYDIPLGFYASQGYLDRFGTPT 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L +H ++ +        + F   A             L+ +     +       GI
Sbjct: 182 TPEALLEHRIMGYDRD-----KQFELGAAQLGWTVRNEDFFLRTDYMPLHIALAAQDGGI 236

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                 +  ++  L+ I   V  P   VY C    + +  +++   +++
Sbjct: 237 VGTHKELA-ESLGLIEIDVGVKLPDLPVYLCCHRDVVHNRRIRLLMDYL 284


>gi|94312147|ref|YP_585357.1| LysR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93355999|gb|ABF10088.1| transcriptional regulator, LysR-family [Cupriavidus metallidurans
           CH34]
          Length = 306

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 115/301 (38%), Gaps = 9/301 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            D   ++ F  +  +G+   A  +  +++S ISRQ+  LE + G  L  R  R L +T+ 
Sbjct: 1   MDLHLVQAFVDIVEAGNLAEAGRRRGVTRSQISRQLGQLEEQAGAMLLRRTTRRLEMTDA 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L+     +  ++   Q E+        G +R++    LG   +   L +F   +P I
Sbjct: 61  GQSLYEHGLRILQEVAAAQAEIDSLGKTLRGHVRVSVPTGLGDAFIAPLLLQFAEKHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            +++   N+  D+     D A+++       + + R +  IH    A+P YL        
Sbjct: 121 SLRVFFANRVTDLIAAEIDVALKVTSEPPLDT-VARDVCPIHWQLCASPAYLAGIAPIRE 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPR--ISCLQVNSYLSIMQYCVLGSG 240
             +L     +       + +       T D P  E       LQ   +  +M     G G
Sbjct: 180 PADLAACRFLCPPYTSRRFLLTLG-RDTCDGPEREDVDITPYLQSEHFPFLMNAVRQGHG 238

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIFLKAR 295
           I+LLP Y+  ++     LV ++ D         +Y         +   +A  +F+     
Sbjct: 239 ISLLPLYMTWEDVRRGTLVPVLPDWKPKGLGNRLYIFTTANPHLSMATRALISFLRETVA 298

Query: 296 D 296
           +
Sbjct: 299 E 299


>gi|289629065|ref|ZP_06462019.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649718|ref|ZP_06481061.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867034|gb|EGH01743.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 303

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 112/289 (38%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F    R GSFT AA +L+L+QS+ISRQ++ LE  +G  LF R  + + LT  G 
Sbjct: 9   LQNLIAFEAAVRHGSFTRAATELNLTQSAISRQVAQLEEFLGRALFRREHKRIHLTVAGQ 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   V         ++   S +   +L +A +  +    L   L  +   +P + I
Sbjct: 69  VYAEQIQRVLTLCAEATAQVITHSGEQ--QLTLACSSGVAALWLGPLLGRYRDAFPAVDI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L + +    +     D A+   +    + L  R L    ++AY +P YL    + L   
Sbjct: 127 RLRVVDGLDSLIRAEFDLALYFLRETSPTGLDSRLLFAESVNAYCSPDYL--NGQLLEPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   D   + +   +W           R   + VN Y  ++   V G GI L 
Sbjct: 185 QLLDHCLLMLEDGQRQWLSWGDWFGRQGVDASLIR-KRMTVNLYPVLVDLAVAGHGIVLG 243

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++     +  LV   +  +      Y   P         +AF  ++
Sbjct: 244 WQPMIDRHVQSGALVPACQKSVGAIGGYYLLTPSGKTPRRAARAFEKWL 292


>gi|83718869|ref|YP_440811.1| DNA-binding transcriptional activator GcvA [Burkholderia
           thailandensis E264]
 gi|167617596|ref|ZP_02386227.1| LysR family regulatory protein [Burkholderia thailandensis Bt4]
 gi|257140538|ref|ZP_05588800.1| DNA-binding transcriptional activator GcvA [Burkholderia
           thailandensis E264]
 gi|83652694|gb|ABC36757.1| LysR family regulatory protein [Burkholderia thailandensis E264]
          Length = 293

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 124/294 (42%), Gaps = 13/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F   AR  SF+ A E+LH++  +ISRQI+  E  +G  +F+RH + + LTE+G 
Sbjct: 8   FPALRAFEAAARHESFSAAGEELHVTHGAISRQIAAFEAWLGKPVFHRHGKRVRLTEEGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +  +     +L+E+       LRI          L   L  F    P++++
Sbjct: 68  RYLATVEAAFDSIARATGQLRETGAAR--VLRINALPTFAMKWLLPRLSRFQREVPNVEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N  +  S+D  D AIR R P +       + +   +    +P  LK      S  
Sbjct: 126 KLSTSNAPLG-SLDGFDVAIR-RGPGRWPGCTSGRFLDESVIPVCSPALLKRT-PIASAD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+   D  P    ++   A   R   + +      + +   +Q  V G G+AL 
Sbjct: 183 DLARHVLLH-SDTRPDAWREWFAAACAPRKGRKKQ----SFDHFYLALQAAVDGLGVALG 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           P  ++ D   +  LV  +      + + ++  P    +   +  F  ++  +A+
Sbjct: 238 PLPLIADELASGRLVTPLPGPRIATRSYWWIAPRETASDALVGRFCAWLDAQAQ 291


>gi|254194107|ref|ZP_04900539.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
 gi|169650858|gb|EDS83551.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           S13]
          Length = 304

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 12/294 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F V AR  +F  AA+++ ++Q ++++Q+  LE  +G+ LF R  RGL LT  G 
Sbjct: 12  LNALRAFEVSARHLNFRAAADEIGVTQGAVAQQVRHLEDALGVALFERLPRGLALTADGL 71

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                     + +      L +        + I+TT       L   L  F   +P + +
Sbjct: 72  AYFADVRRALNLIGDATDRLAKRRAN----VTISTTPSFASRWLIPRLASFGDEHPGVDL 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++I D++      D  D AIR  KP     L+ R L  + ++A  +P  L         +
Sbjct: 128 RVIADSQLATFQGDGVDLAIRYGKPPFGKGLVTRLLFPVDIYAVCSPALLAPPGALARAR 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+     +        +LA +   +        + N     +   + G G+AL 
Sbjct: 188 DLAGHALLHDAHDL-----WPEFLAALPERVAIDPAKGPRFNQSSLAIDAAIAGHGVALA 242

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            D +V  +     L R+ +  +  S   Y   P   +  G +     ++  +A+
Sbjct: 243 SDQLVARDIEAGRLRRLFDFALPLSVGYYIVRPSEPRRPGDIAQTEAWLIRQAQ 296


>gi|228927486|ref|ZP_04090541.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832205|gb|EEM77787.1| Transcriptional regulator, LysR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 300

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 132/295 (44%), Gaps = 16/295 (5%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IQIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRSLEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  KAGRILLLHSKTIFHEIEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHY-LKN 176
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       + L  
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKEIISTPLYESELIIVVPTGHQLAE 180

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
               +SI EL  + LI    L+PK       + +  +         L++++  S++Q   
Sbjct: 181 HNH-VSIAELKNYPLI----LLPKNFFLTELITSHCQKFNFKPKPILEISTMESLIQMVS 235

Query: 237 LGSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
            G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F 
Sbjct: 236 KGMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFI 288


>gi|163740741|ref|ZP_02148134.1| predicted DNA-binding transcriptional regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161385732|gb|EDQ10108.1| predicted DNA-binding transcriptional regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 293

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 114/287 (39%), Gaps = 4/287 (1%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + + +F  VA    F  AA++L L   S+S  +   E  +G++L  R  R + LT+ G  
Sbjct: 2   NDVSIFVAVAHENGFRAAADKLKLGAGSVSEAVQRFEDRLGVRLIERSTRTIALTQAGEL 61

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+R +    + LET   ++ + +   SG LR+      GQ  L   +  F   +P + I+
Sbjct: 62  LYRRSLPAINDLETALKDVHDLNEDISGTLRLTAPTATGQLFLDALITGFAKEHPAMTIE 121

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           LI D   +D+     D AIR    +   +       T  M   A+P YL          +
Sbjct: 122 LIYDETKVDLVTSGVDAAIRAETLLDPDTHAIAIGPTQEMMIVASPDYLAKGPHLEEPAD 181

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           +  H  + F       +  +      D P        L  N   SI++    G G+A + 
Sbjct: 182 VAAHGGVCFAFTGANNLAPWV-FTGADGPYSVMPRPKLVTNDVTSILEGAKAGLGLAYIF 240

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
               +   ++ +LV+++E            Y        +++AF +F
Sbjct: 241 ASSAECSLEDGSLVQVLEGRAATLPRFSLNYLSKRNMPSRVRAFVDF 287


>gi|319795193|ref|YP_004156833.1| LysR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315597656|gb|ADU38722.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS]
          Length = 297

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 127/293 (43%), Gaps = 7/293 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            F    +R+F   A+ G  T AA+ L + ++S SRQ+  LE  VG +L +R +    LTE
Sbjct: 3   DFSLSDVRLFTKAAQLGGLTPAADALSVPKASASRQLQRLEAMVGHQLLHRGSTRFALTE 62

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +      +V   L+   + L   +   +G+LR+A     G+ LL  +L +F+  YP 
Sbjct: 63  EGREFLVAAGQVLTILDDVMLSLSSGAGTLAGRLRVAAPHYYGRELLGVHLPDFMSAYPQ 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           +++ +   N   D+  D AD AIR  +      ++ R L    M   A   YL   +   
Sbjct: 123 LEVVVETGNDRADLFRDEADVAIRRGREGCDE-MVARHLKNEPMVLCATSDYLAPRQAIE 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L  H  +       K     +      R   E   S  Q +    I++  +   GI
Sbjct: 182 SVSDLAPHAFLVSEIEGRKKEISLSITGKTHRLNVE---SVFQSDDLELILKLTLAAKGI 238

Query: 242 ALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
            L+P  + +   D+  L  ++  +      +   Y  + +++ K+K F +++ 
Sbjct: 239 GLVPLSLARSHLDSGALSAVLPALKLTPQEINLVYLPSRRHSPKIKTFVDYVL 291


>gi|167840408|ref|ZP_02467092.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 289

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  V RS + T AA+QL + Q+++ R++ GLE  +G +LF R   G  LT  
Sbjct: 1   MNWDDVRIFLAVHRSVTLTGAAQQLGIDQTTVGRRLGGLEGALGSRLFLRTTEGFVLTRS 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++     E+     + +   + +  +  G +R+ TT  L  + +   ++     +P I
Sbjct: 61  GEQVLETAREMERLAVSFERRSEGADERIEGDVRVTTTDTLAIDFVIPAIERLQTRHPGI 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    + +D+S   AD AIR  +P +   LI R+L +  +  YA+  Y+    EP  
Sbjct: 121 RVLLSTTPRLLDLSRREADIAIRTERP-ELQGLIVRRLGSWEVGLYASRSYVARRGEPRP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             E   H+L  +   + K   D      V       R+   +++S L +  +   G  + 
Sbjct: 180 GGEFSGHDLAVYQPGVTKRQHD----TFVGESRARGRVVA-ELDSSLMLSAFVRAGLALG 234

Query: 243 LLPDYIVKDNPNLVRIMED-VITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            LP Y+ +  P LVRI      +  +  +      L  T +++   + +  +
Sbjct: 235 ELPTYMAQRYPELVRIWPARRRSSPYEAWMVLHADLARTARVRVVVDALAGQ 286


>gi|83645111|ref|YP_433546.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83633154|gb|ABC29121.1| Transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 298

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 118/295 (40%), Gaps = 12/295 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               + +R F   AR  SFT AA +L ++Q+++S Q+  LE  + +KLF R  RGL +T 
Sbjct: 5   HLPLNAIRAFEAAARHLSFTQAAIELCVTQAAVSHQVKVLEERLNVKLFKRLPRGLMITP 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L    ++ + ++      L+   V+    L +          L   L +F   +P 
Sbjct: 65  EGEALLPTVNQAFDRMSEALSRLEGGQVRE--VLSLGVVGTFAVGWLLPRLADFQQQHPF 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           ++I+L  +N  +DI+ +  D AIR         +    L    +     P   +      
Sbjct: 123 VEIRLSTNNNRVDIAAEGLDYAIRFGDGAWH-GVDAAPLFEAPLTPLCIPALAE---TLC 178

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           + + L  H L+       +  E  NW A          I  +  +S +++M+  + G G+
Sbjct: 179 TPENLSGHTLL----RSYRANEWSNWFAAAGMAQPANLIKGIVFDSSIAMMEAALQGVGV 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVI--TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           AL P  +   +     I +           +    ++   T  + AF+ ++  + 
Sbjct: 235 ALAPPLMFSRHLASGAIQQPFSCFISEGGYWLTRLKSRAPTPAMDAFQGWMLQRV 289


>gi|299768450|ref|YP_003730476.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
 gi|298698538|gb|ADI89103.1| LysR substrate binding domain protein [Acinetobacter sp. DR1]
          Length = 324

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 126/296 (42%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G
Sbjct: 19  SFDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    +V  ++E  +  L +   +P G ++++    +    ++  L +FL  YP ++
Sbjct: 79  QEFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVE 138

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R    
Sbjct: 139 ISLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RTIEH 197

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     I+ G      +     +      +  P    ++ N    +    + G GIA
Sbjct: 198 YSELQDFPSISLGTQKQNPIWHLCNIRN-GESVDVPYQPRIKSNDLAGVYYAVMDGLGIA 256

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP   V+       L+ I+ D  +    +   Y         ++     +  + R
Sbjct: 257 DLPFLTVESEIRKGTLIHILPDWKSNIGMLQLVYVSRKGQRLVVEKLIETLIEELR 312


>gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herminiimonas arsenicoxydans]
 gi|133738310|emb|CAL61355.1| putative transcriptional regulator, LysR family [Herminiimonas
           arsenicoxydans]
          Length = 304

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 121/296 (40%), Gaps = 8/296 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    + LR+F   A + SF  AA +L  S  +I+R +  LE  VG  LF+R+ RG+ +T
Sbjct: 1   MLNRLEMLRLFCAAADASSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQIT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQE-SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           E G++L     E+   ++         S     G +RI     +G+  L   L   +  Y
Sbjct: 61  EFGTQLAEHAREMVTGVDKLFHHTNPLSDTNLEGLVRITAPSPIGRRHLLKLLLPLIRQY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P I+++L + N   D+     D  +R+  P++ S L+ R +  +     A P  +    +
Sbjct: 121 PGIKLELGVTNLLADVVDKKIDIGVRIG-PLRDSRLVARSVGKVSFFVVATPELVATRGK 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P++ Q+L      T   +       + W     +P+       L  +         + G 
Sbjct: 180 PITPQDLLGLP--TTALMDGNTGRIWPWYFADSQPLTLTS-PTLVSDDPEVECDAVLAGI 236

Query: 240 GIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           G   L ++  +    +  LV +++D     + +Y   P+      +++   + I  
Sbjct: 237 GYGQLSNHQAEPHIRSGRLVTVLDDYQPVPWDLYVYRPQRGPVPARIRLVFDRIVE 292


>gi|28901602|ref|NP_801257.1| LysR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838198|ref|ZP_01990865.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260363153|ref|ZP_05776022.1| transcriptional regulator [Vibrio parahaemolyticus K5030]
 gi|260880438|ref|ZP_05892793.1| transcriptional regulator [Vibrio parahaemolyticus AN-5034]
 gi|260894806|ref|ZP_05903302.1| transcriptional regulator [Vibrio parahaemolyticus Peru-466]
 gi|260900155|ref|ZP_05908550.1| transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|28810149|dbj|BAC63090.1| putative transcriptional regulator, LysR family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149748398|gb|EDM59257.1| transcriptional regulator, LysR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308089398|gb|EFO39093.1| transcriptional regulator [Vibrio parahaemolyticus Peru-466]
 gi|308092426|gb|EFO42121.1| transcriptional regulator [Vibrio parahaemolyticus AN-5034]
 gi|308110041|gb|EFO47581.1| transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|308112133|gb|EFO49673.1| transcriptional regulator [Vibrio parahaemolyticus K5030]
          Length = 303

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 119/286 (41%), Gaps = 14/286 (4%)

Query: 12  YVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTS 71
             +    S   AA++L+ S + +SRQ+  LE  + ++L  R  R   LT  G + ++   
Sbjct: 13  VALCEERSIAGAAKRLNCSNAHVSRQLKQLEDILSVQLIQRTTRQFNLTYDGLRFYQQVK 72

Query: 72  EVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNK 131
           ++    E    E   ++   SGKLRIA +   G  LL   L EF L +P + +++I    
Sbjct: 73  QLLEGAEQI-NEQVMANEIVSGKLRIAASASFGAALLSQTLIEFRLQHPQVSVEVIFTEA 131

Query: 132 DIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNL 191
            +D+     D A            +  +L T+H    A   YL +     + ++L     
Sbjct: 132 PLDLIEAGFDIAFYFTD-TPPEGYVGHQLRTLHCKPIAHRSYLADKPNVSTPEDLGDLEH 190

Query: 192 ITFGDLIPKCMEDFNWLATVDRPIGEPRI---SCLQVNSYLSIMQYCVLGSGIALLPDYI 248
           I +     + +    W  T  +   + RI   S L  N   S++   + G G+A+L ++ 
Sbjct: 191 ILYKS---RDLVLDKWTFTHKQTQQQCRIELESTLSFNLVQSMLDATLAGCGVAMLDEFA 247

Query: 249 V-----KDNPNLVRIMEDVITPS-FTVYFCYPEALKNTGKLKAFRN 288
           +          LV ++ D  T +   +Y  YP+      + +AF +
Sbjct: 248 LAKLESAQKEQLVSLLPDWQTDAILPLYLLYPKREHLPRRTRAFID 293


>gi|116693166|ref|YP_838699.1| LysR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|254250008|ref|ZP_04943328.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
 gi|116651166|gb|ABK11806.1| transcriptional regulator, LysR family [Burkholderia cenocepacia
           HI2424]
 gi|124876509|gb|EAY66499.1| regulatory protein, LysR [Burkholderia cenocepacia PC184]
          Length = 301

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 109/289 (37%), Gaps = 7/289 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             LR F   AR  SFT AA +L  +Q ++S+Q+  LE E+G+ LF R  RG+TLT  G  
Sbjct: 11  QALRAFESAARLASFTAAARELGSTQPAVSQQVFQLEAELGVPLFERSPRGVTLTADGQC 70

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L+         L      L+       G L I T        L   L     + PD+ ++
Sbjct: 71  LYEAVRLSLDTLRGATATLRARRE--HGALTIVTDFGFATYWLMPRLAGLKRVMPDVDVR 128

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           ++   +D D   D+ D A+        S    R L    +    +P +    R     + 
Sbjct: 129 VVTS-QDYDAQRDHGDIAVLFGDGHWPSCTAAR-LFPESVTPVCSPAFRDAHRGVARAEH 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L    L+      P+    ++                +  NSY  ++   +LG G+AL  
Sbjct: 187 LLALPLLHVQPTRPERWLSWSGWFDAHGLESPAATRGVTFNSYALVIHAALLGEGVALGW 246

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +V +      LV++++  +  S   +   P           FR ++ 
Sbjct: 247 APLVDELVAAGQLVKLVDAPVVTSRGYFLVRPPQRPEPDATHVFRRWLL 295


>gi|229156008|ref|ZP_04284109.1| Transcriptional regulator, LysR [Bacillus cereus ATCC 4342]
 gi|228627615|gb|EEK84341.1| Transcriptional regulator, LysR [Bacillus cereus ATCC 4342]
          Length = 300

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 134/305 (43%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H+++  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVQQARSAIQDLNGLQQGSLTIGALLTVVNYLLPTAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q    I   L    +       +    
Sbjct: 122 NIELSVFGLRTGDIREKLLQNELDIGITF-LPVQDKETISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F   +   
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFIEQLKST 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|311103385|ref|YP_003976238.1| LysR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758074|gb|ADP13523.1| bacterial regulatory helix-turn-helix protein, LysR family protein
           7 [Achromobacter xylosoxidans A8]
          Length = 304

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 122/293 (41%), Gaps = 12/293 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F   AR  SF+ AA++L ++QS++S  I  LE E+G+ LF R  R + LT  G   +
Sbjct: 13  LRAFEAAARRMSFSLAAQELFVTQSAVSHHIQRLEAELGVALFERRTRAVALTAAGQAYY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                 +  L     EL+     P   LR+          L   L  F   +PD+ +QL 
Sbjct: 73  ERVHAAFELLRQGTDELRA-PATPRQTLRVGLLASFATRWLAPRLAVFGAAHPDVDLQLQ 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            D    D++    D AIR  + +    +  R ++   +    AP  +   + P + Q+L 
Sbjct: 132 PDIGLADVAGGEVDVAIRYGRGVW-PGVRSRLIMAERLSVVCAPALIAGRKRPRTPQDLL 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P   + +     VD    +P    ++++ Y  +++  + G G+A+    
Sbjct: 191 RFPLLASHARHPFEWDAWARHHGVDLGGVQP----VRLHDYNIVVEAALAGQGMAMGRHR 246

Query: 248 IVK---DNPNLVRIMED--VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           ++     +  LV  +    +  P    +F  P         + F +++  +A+
Sbjct: 247 LISAQLASGALVHALPGTTLEAPRIGWWFVTPRGALGEAA-QRFLDWLLQEAQ 298


>gi|260556838|ref|ZP_05829055.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260409444|gb|EEX02745.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 324

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 127/296 (42%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G
Sbjct: 19  SFDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    +V  ++E  +  L +   +P G ++++    +    ++  L +FL  YP ++
Sbjct: 79  QEFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVE 138

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L++ R    
Sbjct: 139 ISLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQD-RTIKH 197

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL     I+ G      +     +      +  P    ++ N    +    + G GIA
Sbjct: 198 YSELQDFPSISLGTQKQNYIWHLCNIRN-GESVDVPYQPRIKSNDLAGVYYAVMDGLGIA 256

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP   V+       LV I+ D  +    +   Y         ++     +  + R
Sbjct: 257 DLPFLTVESEIRKGTLVHILPDWKSNIGMLQLVYVSRKGQRLVVEKLIETLIDELR 312


>gi|239993372|ref|ZP_04713896.1| putative transcriptional regulator, LysR family protein
           [Alteromonas macleodii ATCC 27126]
          Length = 294

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 10/282 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L+VF  V  SGS + AA +LH++ S+IS+Q+  LE ++G+ LF R+ R L+LTE G 
Sbjct: 6   LRSLQVFVAVTDSGSMSVAARELHMTVSAISQQLRKLEHDIGLSLFNRNTRSLSLTEAGR 65

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +  + ++    E  Q +++     P+GK+ I      G  LL   LK+    +P I I
Sbjct: 66  IYYETSKQMLQTAELAQQKIESLQDDPTGKINIIAPEGFGGGLLSEPLKKLCEEFPKITI 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + ++  DI    AD  +    P+  ++     L T       +  +        S +
Sbjct: 126 SLTVTDEPKDIIASSADLVLCFA-PVSDTNFSSLVLATWKRILCVSADHPLANETLTSPE 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L+ H  I    +    M+  +          E     + VNS  ++++      G A+L
Sbjct: 185 ALNAHTYIAHRHIEEYVMKHES------EGEYELDTQRIDVNSMQTLIKLTQDSVGYAVL 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKL 283
           P+  V+    +  + ++  D   P +TVY   P+      K+
Sbjct: 239 PEPEVRHLLKSGEMKQLFTDWELPDYTVYAVTPKRELMPAKI 280


>gi|167614896|ref|ZP_02383531.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
          Length = 297

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 7/278 (2%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G+KL+  + E
Sbjct: 2   AIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAGNKLYSASQE 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
               L      ++    + +G LR+A         L      F+  +P I+++++ ++ +
Sbjct: 62  FVSGLYDVIGSIRRLRHESTGLLRVAAPSGFSTAHLSSIAATFIHQHPQIELEIVCNDDE 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           ID+  +  D A     P +      + L        A+P Y +    P    +L   + I
Sbjct: 122 IDLVGERVDLAFETGWP-KKKGFRMKMLGAFEQMLVASPEYSRKHAVPRHPDDLPGSHWI 180

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252
             G L       ++      R +       L+V S L   Q  + G+GI+  PDY+V ++
Sbjct: 181 GHGGLANLS---YSVFGNEGRSVRVQTSGRLKVKSVLLAHQMALAGAGISAFPDYLVAED 237

Query: 253 ---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
                L R++     P   +Y       + + + + F 
Sbjct: 238 LREGRLHRLLPTWTMPKGGIYAFRTSPRQASVRERLFL 275


>gi|127511170|ref|YP_001092367.1| LysR family transcriptional regulator [Shewanella loihica PV-4]
 gi|126636465|gb|ABO22108.1| transcriptional regulator, LysR family [Shewanella loihica PV-4]
          Length = 305

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 127/293 (43%), Gaps = 12/293 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           ++ VF  V   GSFT AAE L  ++S++S+ +S LE ++G+KL  R  R L LT QG  +
Sbjct: 16  QMLVFDEVVNQGSFTAAAEALGHTKSAVSQYVSQLEQDLGVKLLTRSTRQLHLTTQGEAM 75

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            + + +++  L  T     +    P G++ I   +     LL   + E    +P +  ++
Sbjct: 76  AQRSRQLWRLLTETLEAAHDQQAVPGGRMAITAPLAFEAPLLTPIIAELCGEFPQLLPEM 135

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
             D+  +DI     D AI +  P + S      +  +     AAP Y+      ++ + L
Sbjct: 136 HYDDARLDILQHNLDMAISVG-PQKDSGYHAIPIGRLDSVLVAAPSYINRSAA-ITAESL 193

Query: 187 DKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPD 246
             H+LI      P  ++  + LA             ++VN+ +S +   + G GIAL+P 
Sbjct: 194 RGHSLIVLPWQRPLVLQGPSGLAFEAAKE-------IKVNTSISAINSAIAGVGIALVPS 246

Query: 247 YIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             ++       L R++ +   PS  V+  +    +    L+     +    R 
Sbjct: 247 IFIETELAEGKLQRVLPEHSGPSREVFAIHAYQQQLPLALRLVVERLKEAFRQ 299


>gi|116050852|ref|YP_790325.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586073|gb|ABJ12088.1| putative transcriptional regulator, LysR family [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 339

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 122/297 (41%), Gaps = 13/297 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           ++  ++  V   GSF+ AA +  L+ S+++R++  LE  VG  L  R    +  T  G  
Sbjct: 29  EQFVLYLDVLDGGSFSAAARKHPLTPSAVARRMDALERAVGSTLLVRTTHAVRATPAGLA 88

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
                  +  +L   + E    S  P G +RI   +  G+  L   + +FL   P + +Q
Sbjct: 89  FADRARRIVTELRLARAEAVSLSTAPQGLIRIDAPVPFGRRHLAPAIADFLKANPGLDVQ 148

Query: 126 LILDNKDIDISMD---YADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L L    ID+  +     D  +R   P+  S L+   L  +     A+P YL+    P S
Sbjct: 149 LRLIGSFIDLQGEHLGEVDLVLRAG-PLPDSRLVATSLAPMVRVVCASPEYLREHGVPAS 207

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +H  I + +L P     F     +      P+ + L  N+  +++   + G GIA
Sbjct: 208 PGELPEHAGIDWDNLSPPYAWRFQHDGKLQH--LRPKRARLATNNAEAMVDAALAGLGIA 265

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFT---VYFCYPEALKNTGKLKAFRNFIFLK 293
            LP ++  +      L  +  D   P+     +Y    E  + + + +    F+  +
Sbjct: 266 HLPTWLCSEYLLRGELQALFCDEGLPAAEPTCIYALRLE-REASSRTRLLLAFLRER 321


>gi|84500358|ref|ZP_00998607.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84391311|gb|EAQ03643.1| transcriptional regulator, LysR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 297

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 118/292 (40%), Gaps = 7/292 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           +WD++R  + VAR G+ + AA+ L +  +++ R I  LE  +G+KLF RHARG T TE G
Sbjct: 3   NWDEIRTAFQVARLGTVSGAADVLGVHHATVIRHIDALEGRLGVKLFQRHARGYTPTEAG 62

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
             L RV      +       ++      SG+L + TTI      L   +  F   YP++ 
Sbjct: 63  QDLLRVAQATDDQFSQLAGRIKGRGSDVSGEL-VVTTIGGISEFLVPVMARFQKDYPEVI 121

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           ++ +   +   +    A  AIR   P      + +  + +    YA+  Y+     P   
Sbjct: 122 LRYLTSARLFRLEYGEAHVAIRAGSPPSQPDNVVQPFMHLQFGIYASRDYIARHGTPSIP 181

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
             ++ H  +   D   +        A   R     R    +     +  Q  V G G+  
Sbjct: 182 DAMEGHRFVGQDDAASRAP-----FARWMRDNIPERQVVFRSGDSEATRQAIVQGVGMGF 236

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +  +   D+ +LV++   +      ++      L  T K++ F  ++    R
Sbjct: 237 MRTFEC-DSRDLVQVHPPLEEWDSRLWLVTHMDLHRTNKVQTFLKYLKDHTR 287


>gi|103485619|ref|YP_615180.1| LysR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98975696|gb|ABF51847.1| transcriptional regulator, LysR family [Sphingopyxis alaskensis
           RB2256]
          Length = 301

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 128/291 (43%), Gaps = 15/291 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +  F  VA +GSF+ AA +L++ Q SIS+ ++ LE  +G++LF R  R LTLTE G +  
Sbjct: 7   MEQFLAVAEAGSFSAAARRLNVGQPSISKAVAQLEAYLGVRLFQRSTRSLTLTEAGRRYR 66

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                        +I  +E   + +G +R+     L +  L   L+EF   +P++ + L 
Sbjct: 67  DGAERAIAAAAAAEIAAKEDGGRLAGPVRVVVPTCLARLHLVPRLREFSDRFPEVTLDLE 126

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + +++ D+     D A+R+   +  ++L+  ++    M   A        +    +    
Sbjct: 127 ITDRETDVVASGVDIALRIG-TLADTALVASRMARTRMALVA-------NKAENGLD--A 176

Query: 188 KHNLITFGDLIPKCMEDFN-WLATVDRP-IGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            HN +    +I +     N W+       I       L ++S  +     + G G A+LP
Sbjct: 177 PHNFMGQPAIISRLHHAKNSWVFRHGSARIAIMVHPALILDSDDAARSAALAGLGYAMLP 236

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
              V    D  +LV ++ + +     ++   P     T +++AF +++  +
Sbjct: 237 RPFVADLIDTGDLVELLPNHMLEDIDLWALLPAGRDQTARVRAFLDWLRPQ 287


>gi|66043955|ref|YP_233796.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|63254662|gb|AAY35758.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae B728a]
 gi|330971979|gb|EGH72045.1| regulatory protein, LysR:LysR, substrate-binding protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 315

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTE 61
            +WD L+ F  VAR+   + AA +L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAARRLGVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G +L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQRLLGYAESIESTLHMACEQVSGSSVALSGHVRMGCTEGFGSFFITPQLSHFLDSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N     
Sbjct: 131 ISLDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLGLYATQAYLDNHSPIE 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I++ D +    E       +     +     L+  S ++     + G  +
Sbjct: 190 HKADLSEHVFISYVDDLAFSSELLYMSNLLPNAQAQ-----LRSTSVIAQYTAALQGRAL 244

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP ++   +P L+ ++ + +  +   +    E L+   ++    ++I  
Sbjct: 245 AILPCFLAAQDPRLLPVLREEVNITRQFWMYCREDLRKLKRITLLWDYIRE 295


>gi|187918915|ref|YP_001887946.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717353|gb|ACD18576.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 302

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 114/293 (38%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F    R GSF  AA +LH++  ++S+ +  LE  +G  LF RH R + LT    
Sbjct: 8   LNALRAFEAAGRLGSFKEAAAELHVTHGAVSQHVRALEEWLGASLFERHNRRVALTTAAK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   ++ +L              S  L +          L   L  F   +PD+ +
Sbjct: 68  TYLAEIGPLFEELARATARY-GFPDTLSRTLSVNAPATFTLRWLVPRLATFRAAHPDVNV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            +   N+ ++   +  D  +R   P        R  ++       +P  L+      +  
Sbjct: 127 NVQTSNESLESLKETYDVIVR-GGPDTFYGYSMRPFLSEERIPVCSPALLQRLPL-RTPD 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++ +H L+    L P+   D  WLA+ + P   P  + L  + +   +Q  + G GIA+ 
Sbjct: 185 DMRQHTLLHTSSL-PRVWPD--WLASAEIPALRP-AAALSFDHFFLTLQAAIDGIGIAMG 240

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +V D+     LV        PS +     P+A      +  FR ++  +A
Sbjct: 241 PTALVADDLASGRLVAPFAGPRLPSRSYCTYVPDAKSADELVLLFRAWLEREA 293


>gi|239820599|ref|YP_002947784.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805452|gb|ACS22518.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 292

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 131/288 (45%), Gaps = 9/288 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            +R+F      G  T AA+ L + ++S SRQ+  LE  VG  L +R A    LT +G + 
Sbjct: 3   DVRLFVKAVEVGGLTQAADALSVPKASASRQLKRLEALVGHTLLHRGAGRFGLTGEGREF 62

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                EV   +      L +++   +G+LRI+    LG+ LL  +L  F+  +P +++ +
Sbjct: 63  LSTAKEVLEAVNQALSRLSDTNEALTGQLRISVPGYLGRELLSSHLSGFMAAHPLLKLTV 122

Query: 127 ILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
            +++  +D+  + AD AIR+  +  +   L+ R++    +   AAP YL+       + +
Sbjct: 123 DVNSGRVDLFREDADVAIRVGLEGCED--LVARRIKRQILVLCAAPWYLERHPAIEKVDD 180

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H  +T G   P+       +  +DR          + N    +++      GIAL+P
Sbjct: 181 LAGHFFLTCG---PERQAMEMVVPGLDREHIVRAARVFRANDPELLLRLACSAGGIALVP 237

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
               K      +LV ++         +   Y  A +NT K++AF +FI
Sbjct: 238 LLCAKAEIQGGSLVAVLPSFELMPEELNLTYLPARRNTRKIRAFVDFI 285


>gi|330809313|ref|YP_004353775.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377421|gb|AEA68771.1| Putative Transcriptional regulator, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 306

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 116/275 (42%), Gaps = 7/275 (2%)

Query: 25  EQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIEL 84
            +L +S  S++R I+ +E  +G +L  R  R + LTE G +       +  +L+  +   
Sbjct: 24  RRLRISPPSVTRAIAAMEERIGTQLLSRTTRNVYLTEAGQRYLEDCRRILSELDEAEEAA 83

Query: 85  QESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAI 144
             S   P G L +   +  G+  +   L ++L  +P + +  +L ++ ++I+ +  D AI
Sbjct: 84  AGSYSIPCGYLTVTAPVLFGELYIAPLLTDYLDQFPSVHLNALLVDRVVNIADEGIDVAI 143

Query: 145 RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMED 204
           R+   +Q ++    K+  +      AP Y +    P    EL K N++            
Sbjct: 144 RIGH-LQENNQHVIKVGEVRQVICGAPAYFQRHGRPTHPGELSKANIVMSSASHLLSHWQ 202

Query: 205 FNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPNLVRIMED 261
           F   A       +PR   L V +  + +     G G+  +  Y V     +  L  +++ 
Sbjct: 203 FMDEANSLSLRFDPR---LVVTANQAAINIACQGWGVTRVLSYQVARQVADGELEVVLKA 259

Query: 262 VITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
              P+  ++  Y ++ +   K++ F +F+  +  D
Sbjct: 260 FEPPALPIHVVYQKSNRVPAKVRTFVDFLADRLGD 294


>gi|313498191|gb|ADR59557.1| Transcriptional regulator, LysR family protein [Pseudomonas putida
           BIRD-1]
          Length = 289

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 142/289 (49%), Gaps = 7/289 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R+F  + R+ +   AA+QL + Q+++SR+++GLE  +G +LF R   GL LT+ 
Sbjct: 1   MNWDDVRIFLTIQRASTLRGAAQQLVIDQTTVSRRLTGLERALGSRLFLRTTGGLVLTDT 60

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G ++ R+  ++     + +   + +  + +G++R+ TT  L  + +   ++     +P++
Sbjct: 61  GQEVLRMAEDMERMAVSFERRGEGADARVAGEVRVTTTDALAVDFVLPAIEHLRASHPEV 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L    + +D++   AD A+R  +P +   LI R+L    +  YA   YL+   EP  
Sbjct: 121 RVILSTTTRLLDLARREADIAVRTLRP-EQPDLIVRQLGCWEVGLYATRSYLEKHGEPQP 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
            Q L  H++  +   +    +  N LA   R  G       +++S L +  +   G  I 
Sbjct: 180 GQGLANHDIALYQQGVTSRQD--NTLAGESRAQGRVVA---ELDSSLMLATFVRAGLAIG 234

Query: 243 LLPDYIVKDNPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFI 290
            LP+Y+ + +P LVR+        S+  +    + L  T +++     I
Sbjct: 235 ELPEYLAQRDPALVRLWPGCRRAKSYEAWLVLHQDLARTARVRVVVEAI 283


>gi|148258541|ref|YP_001243126.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410714|gb|ABQ39220.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 305

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 125/291 (42%), Gaps = 13/291 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DW  L  F  +AR G+ + AA  L +   +++R+++ LE    IKL  R AR  TLT
Sbjct: 22  MQIDWTDLHHFVTLAREGTLSAAARALGVDHVTVARRVAALERTTKIKLVDRRARTYTLT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +L    S + H     +  +  S    +G++ I+    L   ++   L E    +P
Sbjct: 82  EDGRRLAAAASPMEHAAFAIERAVVASRPGLTGEVSISAPPTLANRIIAPRLVELRRQHP 141

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I I+LI + +   ++   AD A+RL +P     LI RK+       Y APHYLK    P
Sbjct: 142 AIAIKLIGEKRIASLNRREADIALRLSRP-DEPGLIARKVGRFGFSLYGAPHYLKE--TP 198

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
                      I +   +    +   WL    + I   R   LQ     S       G G
Sbjct: 199 QH-----ALGFIAYDASMDSAPQQ-QWL----KAIAGRREIVLQTGDLESQAAAARAGLG 248

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           IA LP ++  ++P L+R  E        ++      L+++  ++A  +F+ 
Sbjct: 249 IAALPHFVGDNDPGLIRYDERQGGVGRDIWLVVHRDLRHSPLIRAVMDFLV 299


>gi|47570132|ref|ZP_00240789.1| transcription regulator LysR family VC1617, putative [Bacillus
           cereus G9241]
 gi|47553196|gb|EAL11590.1| transcription regulator LysR family VC1617, putative [Bacillus
           cereus G9241]
          Length = 300

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 134/305 (43%), Gaps = 14/305 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V++   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVSKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G  L   +  ++H+++  +  +Q+ +    G L I   + +   LL   +  F  LYP
Sbjct: 62  EAGKILLSHSKTIFHEVQQARSAIQDLNGLQQGSLTIGALLTVVNYLLPTAILNFNNLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q    I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPVQDKETISIPLYKSDLTLVVPTGHRLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +  +         L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCQKFNFKPRPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F   +   
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKDKYMCAATREFIEQLKST 294

Query: 294 ARDWK 298
            R ++
Sbjct: 295 VRSFQ 299


>gi|221197367|ref|ZP_03570414.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221204041|ref|ZP_03577059.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221176207|gb|EEE08636.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221183921|gb|EEE16321.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 323

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 128/299 (42%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F  V  SGSF  AA ++ +++S++++ ++ LE  +G++L  R  R L LT
Sbjct: 1   MDERLRGVAEFVEVVESGSFAAAALRIGVTRSAVAKVVARLERRLGVRLLQRTTRQLNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +     +  +L  T+  L     +P+G+LRI+  +  G+  +   ++  +  +P
Sbjct: 61  DEGHLYYEQCRRLLAELGDTEAALDAGRREPAGRLRISVPVLFGRQCVAPVMRRLVERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ +   ++  D+  D  D A+R+     +++L+ R+L    M   A+P YL     P
Sbjct: 121 RLEVDMSFSDRVADLIDDGFDIAVRIGVLADTTALVGRRLGVQRMGICASPAYLDRHGWP 180

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
                L  H  I +   G  +P  +   N      R  G  R   LQ  +  +     + 
Sbjct: 181 SGPDALASHVGIAYARGGQPVPWRIIGANGEVREHRVAGRLRFDDLQAIAEAAAAGAGLA 240

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 LP +++     +  L  +M+        V    P+A     K++   + +  +
Sbjct: 241 -----WLPCWLMAPYLRDGRLALVMDSNSVSGADVSAVRPKARHVPSKVRVAIDALVDE 294


>gi|330962472|gb|EGH62732.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 315

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 127/291 (43%), Gaps = 7/291 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHA-RGLTLTE 61
            +WD L+ F  VAR+   + AA++L +  +++SR+I+ LET +G  LF +    G  +T 
Sbjct: 11  LNWDDLKFFLEVARTRKVSSAAKRLAVDYTTVSRRINSLETSLGTLLFEKSRNNGFIMTA 70

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G  L      +   L     ++  SSV  SG +R+  T   G   +   L  FL  YP 
Sbjct: 71  EGQHLLGYAESIESTLHMACEQVSGSSVALSGHIRMGCTEGFGSFFITPQLSHFLGSYPS 130

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL +     
Sbjct: 131 ISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYSLRLYATQEYLDSHAPIQ 189

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +L +H  I++ D +    E       +     +     L+  S ++     + G  +
Sbjct: 190 RKADLSEHVFISYVDDLAFSSELLYLSNLLPNAQAQ-----LRSTSVIAQYTAALQGRAL 244

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           A+LP ++   +P LV ++ED +  +   +    E L+   ++    ++I  
Sbjct: 245 AILPCFLATQDPRLVPVLEDEVNITRQFWMYCREDLRKLKRITVLWDYIRE 295


>gi|94313772|ref|YP_586981.1| putative LysR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357624|gb|ABF11712.1| putative transcriptional regulator, LysR family [Cupriavidus
           metallidurans CH34]
          Length = 316

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 13/306 (4%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S D + +R+F  +  S + T AAE+  +++S++SR++  LE  +G +L  R  R + LTE
Sbjct: 5   SLDLNLVRLFVTMVESRTLTAAAERSGMTRSNVSRRLKVLEQHLGAQLMRRTTRHVELTE 64

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L+     +  +L++ +  +        G +RI     LG   L   L EF  +YP 
Sbjct: 65  AGQLLYAHALRMLDELQSAKTAIDSLGTVVRGDVRIRLPTGLGHLYLTPLLLEFARIYPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I +++++++   D+     D A+++         + R++  +     A P +L +    L
Sbjct: 125 ISLRVVINDNIGDLISAEVDMALKITSQPPDDH-VARRICDVGWCLCATPSFLDSRGPIL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           S+ +L+  ++I    L  +         T       PRI   Q   Y  +++  + G G+
Sbjct: 184 SVADLESCDMIAPASLGRRFTLKVWMAGTPTTLRVSPRI---QSGDYPFLLESMIGGLGV 240

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFT--VYFCYPEALKNTGKLKAFRNFIF----L 292
           ALLP Y V        +  ++ +         VY         T   +   +FI      
Sbjct: 241 ALLPRYAVWRQLQTGQVREVLAECEAEGVGDSVYMLTASNRYPTLATRTLMDFIRVHLER 300

Query: 293 KARDWK 298
           +A  W+
Sbjct: 301 QAESWR 306


>gi|260550245|ref|ZP_05824458.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406773|gb|EEX00253.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 324

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 6/296 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
            +D    FY+V + G F+ A+E  ++S+S +SR+I  LE +  + L  R  R   +T+ G
Sbjct: 19  SFDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLG 78

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
            + +    +V  ++E  +  L     +P G ++++    +    ++  L +FL  YP ++
Sbjct: 79  QEFYEECCKVIAQVECAENVLLRQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVE 138

Query: 124 IQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           I L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R    
Sbjct: 139 ISLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RTIEH 197

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             EL +   I+ G      +     +      +  P    ++ N    +    + G GIA
Sbjct: 198 YSELQEFPSISLGTQKQNYIWHLCNIRN-GESVDVPYQPRIKSNDLAGVYYSVMDGLGIA 256

Query: 243 LLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            LP   V+       LV I+ D  +    +   Y         ++     +  + R
Sbjct: 257 ELPFLTVESEIRKGTLVHILPDWKSNIGMLQLVYVSRKGQRLVVEKLIETLIEELR 312


>gi|330875002|gb|EGH09151.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967487|gb|EGH67747.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 298

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 112/289 (38%), Gaps = 8/289 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F    R GSFT AA +L+L+QS+ISRQ++ LE  +G  LF R  + + LT  G 
Sbjct: 9   LQNLIAFEAAVRHGSFTRAATELNLTQSAISRQVAQLEEFLGRALFRREHKRIHLTVAGQ 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                   +         ++   S +   +L +A +  +    L   L  +   +P + I
Sbjct: 69  IYAEQIQRMLTLCAEATAQVITHSGEQ--QLTLACSSGVAALWLGPLLGRYRDAFPAVDI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L + +    +     D A+   +    + L  R L    ++AY +P YL    + L   
Sbjct: 127 RLRVVDGLDSLIRAEFDLALYFLRETSPAGLDSRLLFAESVNAYCSPDYL--NGQVLEPA 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L  H L+   D   + +   +W A         R   + VN Y  ++   V G GI L 
Sbjct: 185 QLLDHCLLMLEDGQRQWLSWGDWFARQGVDASLIR-QRMTVNLYPVLVDLAVAGHGIVLG 243

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
              ++     +  LV      +      Y   P         +AF  ++
Sbjct: 244 WQPMIDRHVQSGALVPACNASVGAVGGYYLLTPSGKMPRRAARAFEKWL 292


>gi|218529959|ref|YP_002420775.1| LysR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218522262|gb|ACK82847.1| transcriptional regulator, LysR family [Methylobacterium
           chloromethanicum CM4]
          Length = 312

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 118/292 (40%), Gaps = 15/292 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F    R  SF  AA++L ++ ++IS QI  LE  +G++LF+R  R + LT +G+ L 
Sbjct: 13  LRAFEAAGRRLSFRGAADELGVTPTAISHQIRLLEQTLGLRLFHRETRRVRLTAEGAVLL 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V    +        +++      +G L ++         L   L +F   +P   ++L 
Sbjct: 73  PVLRNGFDAFAEAIDQIRGRRA--AGVLTLSAPTAFVAKWLVPRLADFRAAHPACDLRLH 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
             +  ID + D  D A+R   P   S     +L+   +    +PH         S+ +L 
Sbjct: 131 ASDSLIDFARDGVDVAVRYG-PGPYSDFDAHRLLAERVTPACSPHL-----AIRSVGDLR 184

Query: 188 KHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            H L+ F    L  +      WL       G    + ++ +    ++Q  + G GIALL 
Sbjct: 185 HHTLLHFEWPRLTDQTPTWPAWLRHAGV-TGVDGRAGIRFSDEGHVIQAAIAGQGIALLS 243

Query: 246 DYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           D +  D   +  LV+     +  +   +   P        ++   +++   A
Sbjct: 244 DVLTADELTSGALVQPF-GPVLDAHPYWVVRPRHSVRKADVEKLVSWLVSAA 294


>gi|329849512|ref|ZP_08264358.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
 gi|328841423|gb|EGF90993.1| bacterial regulatory helix-turn-helix protein, lysR family protein
           [Asticcacaulis biprosthecum C19]
          Length = 306

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 120/297 (40%), Gaps = 16/297 (5%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L+ F   AR+GS T AA +L+L+QS++SRQI  LE ++ ++LF+R  + + LT  G
Sbjct: 10  SLSHLQAFEAAARTGSVTLAARELNLTQSAVSRQIKALEEQLEVELFHRERQTIRLTPGG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
               R   +   K+ T  + L+       G L +A     G   L   L  FL   P I 
Sbjct: 70  EAYARDIRDALKKIGTASLNLRA--NPLGGTLNLAILPTFGTRWLAPRLPSFLNANPGIT 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           + L+      D +++  D AI      +        L   ++    +P          + 
Sbjct: 128 LNLMTRLTVFDFALEPLDAAIHHGLG-RWPGAETVLLREEYVVPACSPALKAQHG-FATA 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L    L+    L  +      WL   + P     +  +  + + ++ Q    G G+AL
Sbjct: 186 SDLRAAPLLH---LTTRPDAWERWLRVHNAPA--EHVQGMLFDQFATVAQVARAGLGVAL 240

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSF----TVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP +++++      LVR ++             Y  +P        L+AFR +I  +
Sbjct: 241 LPTFLIEEELKAGQLVRALDLPDGGEMKNAEAYYLAWPAERAEHPPLRAFREWILAE 297


>gi|325518919|gb|EGC98468.1| LysR family regulatory protein [Burkholderia sp. TJI49]
          Length = 302

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 119/294 (40%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +R++  V   G+ + AA  L + Q ++S +I  LE  +G +L  R AR LT T
Sbjct: 1   MDL-LATMRIYVRVVERGTMSGAARDLDMGQPAVSERIEKLEKFLGTRLLMRSARTLTCT 59

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E+G   +  + E+      +   + ++    SG +R+A+    G+ ++   L     LYP
Sbjct: 60  EEGRIFYERSKELLDAAADSIASVSKAEHTLSGTIRLASPQCFGEVVIPQALMHIRTLYP 119

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I L+L++  +D   +  D +IRL + +     +   +  +     AAP YL      
Sbjct: 120 QLRIDLVLNDNIVDPVTEGVDISIRLGQ-LGDGGFVAHPIGHVGRVLVAAPSYLDRYGPV 178

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGS 239
            +  +L KH  +    +          L   D  +   RI + +  + +  +    + G 
Sbjct: 179 ETTADLVKHPFVRVKGVFANEQLP---LQNADGTLEHARIQTVMTTSHWRPMFDTIMAGG 235

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           GI ++      +      LV ++     P F +            +++   + +
Sbjct: 236 GIGVVQQPACANALAQGRLVELLPAYAIPDFALNALVQAHRPLPPRVRVIVDLL 289


>gi|319782637|ref|YP_004142113.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168525|gb|ADV12063.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 300

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 120/293 (40%), Gaps = 18/293 (6%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F  AAE+L+++Q ++++ I GLE ++G KLF R  RGL LT++G 
Sbjct: 11  LNALRAFEASARHLNFRIAAEELNVTQGAVAQHIRGLEADLGTKLFERLPRGLALTDEGR 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    +  +    + L+        +L I+ T       L   L +F+   P + +
Sbjct: 71  AYVPNIRRAFDLISEATLLLRPEPA----RLTISVTPSFATKWLIPRLHDFVAHNPLVDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++          D  D A+R  +P   + L+   L    + A  +P  L      ++  
Sbjct: 127 RVLASESLSSFQADGVDIAVRQGRPPFGAGLVVDLLFPQQIVAVCSPALLPAGAIEIAAS 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRIS---CLQVNSYLSIMQYCVLGSGI 241
           E+  H L+     +        W   +++ IG    +    ++ N     +   V G GI
Sbjct: 187 EIQHHVLLHDAHNL--------WPEFMEKAIGLKMTTELKRMRFNQTGLAIDAAVAGQGI 238

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
           AL   ++V        LV+ +   +  +   Y   P   ++    +A R ++ 
Sbjct: 239 ALASRFLVAAELATGRLVQPVSGEMRGTQDFYVVMPRKQRHPEPTQAVRQWLL 291


>gi|260914178|ref|ZP_05920651.1| glycine cleavage system transcriptional activator [Pasteurella
           dagmatis ATCC 43325]
 gi|260631811|gb|EEX49989.1| glycine cleavage system transcriptional activator [Pasteurella
           dagmatis ATCC 43325]
          Length = 295

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 128/296 (43%), Gaps = 15/296 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AAE+L ++Q+++S QI  LE  +GI+LF R  R L LT+ G 
Sbjct: 8   LNSLKAFESAARHLSFTKAAEELFVTQAAVSHQIKLLEDFLGIELFKRKNRALELTDLGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 +++ H+L     +L          L I+     G   L  +L  F  LYP+I++
Sbjct: 68  AYFVDVTKILHRLVEATDKLLALKNDKH--LTISVPQTFGIQWLVPHLSGFNKLYPEIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI- 183
           +L   ++D  +     D AI   +     +L   KLV  ++   A+P  L+    P+ I 
Sbjct: 126 RLKGVDQDEGLLSKEIDIAIYYGQGNWD-NLQVEKLVEENLLILASPKLLEQN--PIHIK 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
           ++L  H LI             N+L   D  I +  +     +     +Q  + G G+ L
Sbjct: 183 EDLKSHTLIH-THTRDNWQNMANFLQLDDLNIQQGSL----FSHTFMALQAAIHGQGLVL 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
               + +   DN +L  ++   +    + Y        N  +++AFR +I    + 
Sbjct: 238 ANRILAQQEIDNGHLQVVLPTQLRDPKSFYVVNHFD-NNDERVQAFRVWIIETMKQ 292


>gi|107103225|ref|ZP_01367143.1| hypothetical protein PaerPA_01004294 [Pseudomonas aeruginosa PACS2]
          Length = 301

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L  + ++++R I  +E ++G +LF +H  G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ +S   P G++RI  T  LG   L   L + +  YP +
Sbjct: 62  GQALLKHAEAMENTALLAQEEMSQSIS-PLGQIRIGVTEGLGSVFLAPRLAQLMRHYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I+   AD AI L +P     +I R L    +  +A+P YL+       
Sbjct: 121 EVELVSVPRFVSITNREADIAISLDRPSAD-LVITRLLTRYRLALFASPAYLEQAPPLRD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  I + D +      F+                 +  S ++  Q    G G+A
Sbjct: 180 RDDLGRHQWIGYVDDL-----LFSQELMFHHSFCRHPQVVFRSTSVVAQQQAAQAGIGLA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LP ++   +P LV ++ +        +      L  + +L+   +F+  
Sbjct: 235 ILPHFMGSRDPLLVPVLPEESI-QREYWMSTRRELHRSVRLRVVWDFLLE 283


>gi|229030133|ref|ZP_04186195.1| Transcriptional regulator, LysR [Bacillus cereus AH1271]
 gi|228731191|gb|EEL82111.1| Transcriptional regulator, LysR [Bacillus cereus AH1271]
          Length = 300

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 131/302 (43%), Gaps = 14/302 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           +  +  +L  F  V +   FT AAE+L++SQ S+S+QI  LE EVG+ LF R  + ++LT
Sbjct: 2   IPIELRQLEYFLAVTKELHFTKAAEKLNISQPSLSQQIRALEHEVGMPLFDRIGKKISLT 61

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L   +  ++H++E  +  +Q+ +    G L I + + +   LL   +  F  LYP
Sbjct: 62  NAGRILLLHSKTIFHEVEQARSAIQDLNGLQQGSLTIGSLLTVVNYLLPPAILNFNQLYP 121

Query: 121 DIQIQ---LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNC 177
           +I++    L   +    +  +  D  I    P+Q   +I   L    +       +    
Sbjct: 122 NIELSVLGLRTGDIREKLLQNELDIGITF-LPMQDKEIISIPLYKSELTLVVPTGHQLAE 180

Query: 178 REPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
           R  +SI EL  + LI    L+PK       + +            L++++  S++Q    
Sbjct: 181 RNHVSIAELQNYPLI----LLPKNFFLTELITSHCHKFNFIPKPILEISTMESLIQMVSK 236

Query: 238 GSGIALLP----DYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           G GI +LP    D++   N   ++I  +  TP+  +   Y +        + F   +   
Sbjct: 237 GMGITVLPKPYIDFLQNKNIQAIKI--ENPTPTIEIGLIYRKNKYMCAATREFIEQLKRT 294

Query: 294 AR 295
            R
Sbjct: 295 VR 296


>gi|34497926|ref|NP_902141.1| LysR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34103781|gb|AAQ60142.1| probable transcriptional regulator, LysR family [Chromobacterium
           violaceum ATCC 12472]
          Length = 302

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 115/293 (39%), Gaps = 11/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR+F   AR  SF+ AA +L ++  ++S+QI  LE  +G++LF R    + LT+ G 
Sbjct: 7   LNSLRIFEAAARLESFSAAAGELFVTHGAVSKQIKQLEDWLGVQLFERSGGRVRLTDAGW 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +      +    +     +L + + +   +L I +T       L   L  F    P++++
Sbjct: 67  RYLVQVQDGLDLIANATSQLLQPNRQR--RLTINSTPTFAAFWLLPRLAGFRSQLPELEL 124

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L+  ++D+       D AIR R P      I +  +        +P  L   +      
Sbjct: 125 HLVTSDRDLSRLDAPFDVAIR-RGPGDWPGHIAKPFLKEWELPLCSPALLSR-QPLAQAA 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+   D  P       WL     P  +P  S L  + +   +Q  V G G+ L 
Sbjct: 183 DLTQHTLLH-ADTRPTAWP--RWLTLAGAPELKPACS-LHFDKFSLALQAAVDGLGVVLG 238

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  +  +      LV  +   +       +  P        +  F  ++  +A
Sbjct: 239 PLPMAHELIAAGKLVSPLPGPVVTVRDYCWVVPRMSAEDATVATFCRWLEGEA 291


>gi|90417058|ref|ZP_01224986.1| transcriptional regulator, LysR family protein [marine gamma
           proteobacterium HTCC2207]
 gi|90331074|gb|EAS46330.1| transcriptional regulator, LysR family protein [marine gamma
           proteobacterium HTCC2207]
          Length = 304

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 124/304 (40%), Gaps = 17/304 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +FT AA +L+++Q++IS+QI GLE+++G  LF R  RGL LT+   
Sbjct: 9   LNWLRSFEAAARHLNFTLAAAELNMTQATISQQIKGLESQLGCALFIRLPRGLELTDAAR 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  E   KL     E+          L + + +      L   L  F   YPDI +
Sbjct: 69  AYIPGVRESIEKLSVVTDEVFGKERSH--TLTVRSNLVFFNTWLAPRLANFRHNYPDIDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYL------KNCR 178
           +    N  +D     AD  IR  K +    LI  +L    +    +P  L      K+  
Sbjct: 127 RF-TSNIWLDSVNKEADIEIRYGKGMW-PDLISDRLTWDQLIPVCSPQLLGPDHISKDTP 184

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            P + +EL +H L+               L        +     +  +S ++ M+  V G
Sbjct: 185 PPSNAEELAEHTLLHVIGYEEGWGHWLKKLGHHSIDASQ----GIHFDSLITAMEMAVQG 240

Query: 239 SGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
            GIAL    I      +  L++  E  +T     +   P        ++AFR+++  + +
Sbjct: 241 HGIALSRTSIASTLLASGKLIKPFEGGVTTEEAFFIAIPSNKPIQNHVQAFRSWVIHQGQ 300

Query: 296 DWKF 299
           + ++
Sbjct: 301 NARY 304


>gi|70733545|ref|YP_257184.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68347844|gb|AAY95450.1| transcriptional regulator, LysR family [Pseudomonas fluorescens
           Pf-5]
          Length = 316

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 117/295 (39%), Gaps = 6/295 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
               D LRVF   AR  SFT AA +L  +Q +IS+QI  LE ++G++LF R  RG+ LTE
Sbjct: 7   DLSLDLLRVFEAAARLRSFTAAAVELGTTQPAISQQIKRLEEQLGVRLFDRIYRGIELTE 66

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
             + L          ++     L +        L++AT        L   L  F    P 
Sbjct: 67  SAALLLDQVQAGLQSIDAGLSALSQQHQHE--VLQVATDFAFAAYWLMPRLHRFHEANPQ 124

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L+   +   +     D A+               L +  +    +P  LK+   PL
Sbjct: 125 VDVSLVTSERSHSMLRSDIDVAVLFGDGRFRQG-ESHWLFSEEVFPVCSPLLLKDRAAPL 183

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
               L +  L+           D++ +       G P    L+ ++Y  ++Q  + G G+
Sbjct: 184 PAPSLLELPLLHLRGEGSNHWFDWSGVFRELGLAGAPAPGQLRFDNYTLLIQAAIGGQGV 243

Query: 242 ALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           A+   ++V D      L R + +    ++  Y   P+  +    ++ F +++  +
Sbjct: 244 AIGWRHLVDDLLEQGLLCRPIAESALSAYGYYVVLPQRKRRGPLIQRFVDWLMSE 298


>gi|222106718|ref|YP_002547509.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
 gi|221737897|gb|ACM38793.1| transcriptional regulator LysR family [Agrobacterium vitis S4]
          Length = 299

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
               L  F   AR+GS T AA +L L+QS++SRQI  LE ++G++LF+R  + + LT  G
Sbjct: 10  SLHLLSAFEAAARTGSVTAAARELSLTQSAVSRQIKALEEQLGVELFHRERQTIRLTAGG 69

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           +   R   +    + T  + L+       G L +A     G   L   L  FL  +P I 
Sbjct: 70  NIYAREIRDALRIISTASLTLKA--NPFGGTLNLAILPTFGTRWLAPRLPGFLSRHPGIT 127

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I L+      D  ++  D AI         + +   L +  +    +P      R   + 
Sbjct: 128 INLVTKLSYFDFRLEPVDAAIHFGLADWQGAEMS-LLRSETVIPACSPELRDTYR-FQTP 185

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +  L+    L  +      WLA+ D    + R   +  + + +  Q  + G G+AL
Sbjct: 186 LDLRQAPLLH---LTTRPDAWERWLASNDVQSDQVR--GMLFDQFATAAQAAMAGLGVAL 240

Query: 244 LPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           LP++++++   +  LV+ ++  +  +   Y  +P    +   L+AFR++I  +
Sbjct: 241 LPEFLIEEEMASGRLVKAIDRPMQSTEAYYLVWPNERGSHPPLQAFRDWILEE 293


>gi|167033082|ref|YP_001668313.1| LysR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859570|gb|ABY97977.1| transcriptional regulator, LysR family [Pseudomonas putida GB-1]
          Length = 309

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 113/298 (37%), Gaps = 12/298 (4%)

Query: 1   MSF-DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M       L +F   +  GSFT AA +  L    ++  I  LE ++ ++LF R  R L L
Sbjct: 1   MKMLRITDLELFARSSVLGSFTAAAHEAGLLPGQVAAAIKRLERDLDVRLFARTTRSLRL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T +G +       V   L     +L  +     G L+++   DLG+N+L   L  F   +
Sbjct: 61  TAEGERYLPTALNVLESLRQGHEDLHGNPNTLRGTLQVSAPSDLGRNMLLPWLSAFRREH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTI-HMHAYAAPHYLKNCR 178
           P +Q++  L ++  D++ D  D AIR     Q ++ I   L         A+P YL    
Sbjct: 121 PALQLRFFLSDQIADLNRDPVDVAIRYGLN-QDANYIALPLADWNRRVLVASPDYLARHG 179

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
            PL+   L +H  + +        +      TV           L  +    I +  + G
Sbjct: 180 RPLTPDALQQHACLLYMQHNRVYDKWRLGNRTVQ------VRGPLVSDDADVIRRLAIQG 233

Query: 239 SGIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
            GI       V  N     L  ++ +++     V    P   + T  +     ++  +
Sbjct: 234 EGIVYKSWLDVSANIAAGELEIVLPEMLGEPTPVTLVCPHRKQLTPAVSQLHLWLRER 291


>gi|167561217|ref|ZP_02354133.1| transcriptional regulator, LysR family protein [Burkholderia
           oklahomensis EO147]
          Length = 293

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 120/293 (40%), Gaps = 13/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  L+ F   AR  SF+ A E+LH++  +ISRQI+  E  +G  +F+R  + + LT++G 
Sbjct: 8   FPALKAFEAAARHESFSAAGEELHVTHGAISRQIAAFEAWLGKPVFHRRGKRVKLTDEGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +  +     +L+E+       LRI          L   L  F    P++++
Sbjct: 68  RYLATVEAAFDSIARATEQLRETGAAR--VLRINALPTFAMKWLLPRLSRFQREMPNVEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N  +  S+D  D AIR R P +  +    + +   M    +P  LK      S  
Sbjct: 126 KLSTSNAPLG-SLDGFDVAIR-RGPGRWPNCASGRFLDESMIPVCSPALLKRT-PIASAD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+          E   W A    P+   +      + +   +Q  V G G+AL 
Sbjct: 183 DLARHVLLHSDTRPDAWRE---WFAAAGTPMKGRKKQSF--DHFYLALQAAVDGLGVALG 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           P  ++ D   +  LV  +      + + ++  P        +  F  ++  +A
Sbjct: 238 PLPLIADELASGRLVTPLPGPRIATRSYWWIAPRETAGEALVGRFCAWLEAQA 290


>gi|218673176|ref|ZP_03522845.1| LysR family regulatory protein [Rhizobium etli GR56]
          Length = 247

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 114/236 (48%), Gaps = 1/236 (0%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   A SGSFT AA +L L+ +++S+ +  LE ++G++LF R  R + LT +G +  
Sbjct: 10  LVSFVESAASGSFTAAAARLDLTPAAVSKNVMQLEQQLGVRLFNRSTRKIVLTAEGREFA 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
           +  SEV   L+    ++  +  + +G++RI+    +G+  +   L      +P +++++ 
Sbjct: 70  QRASEVLRALDDAVSDVSRAGGEAAGRVRISVGASIGRRYVLPLLPSLAAAHPRLELEVS 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           LDN+ +D+  +  D  +R    I+ SSLI R++  + M   A+P YL+    P +  +L 
Sbjct: 130 LDNRAVDLVAEGFDIGVR-GGVIRDSSLIARRVCRLPMVLVASPGYLQRHGIPRTPADLA 188

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            H+L+                 T    +     + +  +   +++   +  +GI  
Sbjct: 189 AHSLLGVRFPSGNVGTWRFRRPTGRGFVEFEPSARIWGSDPDAMVDLALADAGIVQ 244


>gi|323492251|ref|ZP_08097409.1| DNA-binding transcriptional regulator DsdC [Vibrio brasiliensis LMG
           20546]
 gi|323313564|gb|EGA66670.1| DNA-binding transcriptional regulator DsdC [Vibrio brasiliensis LMG
           20546]
          Length = 316

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 126/299 (42%), Gaps = 8/299 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           SF   KL  F VVAR  SF+ AAE+L L+ S+IS +I+ LE E+G++LF R  R +TLTE
Sbjct: 16  SFQLAKLHTFEVVARHCSFSLAAEELSLTPSAISHRINKLEHEIGVRLFTRTHRKITLTE 75

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           QG ++++      + L     +++      SG L + T     Q  L   +  F   YP 
Sbjct: 76  QGERIYQSLQRTLNDLNQEIHDVKS--GDISGPLTVYTRPSFAQCWLVPRIHLFKEHYPS 133

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I ++L+  N+ I+      D AI     +    L  +++++  +       Y    +   
Sbjct: 134 IDLKLLTGNEKINFQGYGIDVAIYFDDHMP-EKLFCKEILSETIIPVCTREYADKHQLNA 192

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNW--LATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           + + L    L+              W   A  +       IS +  +     +   +  +
Sbjct: 193 AKENLRHVTLLHDNQAWGYDSNQDEWNSWAQANHIADVSGISSIGFDRSDLALVAALNNA 252

Query: 240 GIALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           G+A+     +KD   +  LV    D        Y+    A  ++ K+K F  ++  +A+
Sbjct: 253 GVAMGRYSQIKDRLSSGELVTPFPDTQVLCKQKYYVATSADNHSPKVKLFIEWLEAQAK 311


>gi|152984328|ref|YP_001346809.1| LysR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959486|gb|ABR81511.1| transcriptional regulator, LysR family [Pseudomonas aeruginosa PA7]
          Length = 301

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L  + ++++R I  +E ++G +LF +H  G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ +S   P G++RI  T  LG   L   L + +  YP +
Sbjct: 62  GQALLKHAEAMENTALLAQEEMSQSIS-PLGQIRIGVTEGLGSVFLAPRLAQLMRQYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I+   AD AI L +P     +I R L    +  +A+P YL+       
Sbjct: 121 EVELVSVPRFVSITNREADIAISLDRPGAD-LVITRLLTRYRLALFASPAYLEQAPPLRD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  I + D +      F+                 +  S ++  Q    G G+A
Sbjct: 180 RDDLGRHQWIGYVDDL-----LFSQELMFHHSFCRHPQVVFRSTSVVAQQQAAQAGIGLA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LP ++   +P LV ++ +        +      L  + +L+   +F+  
Sbjct: 235 ILPHFMGSRDPLLVPVLPEESI-QREYWMSTRRELHRSVRLRVVWDFLLE 283


>gi|325925072|ref|ZP_08186493.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325925924|ref|ZP_08187292.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325929166|ref|ZP_08190308.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325540451|gb|EGD12051.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325543647|gb|EGD15062.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
 gi|325544517|gb|EGD15879.1| transcriptional regulator, LysR family [Xanthomonas perforans
           91-118]
          Length = 301

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 118/295 (40%), Gaps = 11/295 (3%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
           +L     + R GSF  AA +L +S ++IS  +  LE ++G++LF R  R ++LT+ G   
Sbjct: 8   ELEAVLAIVRCGSFRAAALELDMSTTAISSAVGKLERDLGVRLFNRTTRSVSLTDAGRMF 67

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
                  +  ++     ++     PSG LRI       + ++   +  +L  YP + + +
Sbjct: 68  VDRIKPAFEGIQNALNAVRSHQETPSGTLRINAFATAAREIMAPLVLSYLQRYPLVHVDI 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAY-AAPHYLKNCREPLSIQE 185
           + + + +D+     D A+R    + S + I   L      A  A+P + +N   P   Q+
Sbjct: 128 VTEGRLVDVVAAGFDLAVRSADLVPSDA-IAIPLGQRRRMAVAASPAFFENRAIPKVPQD 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  +  +     +P               +       + ++           G GI    
Sbjct: 187 LLVYPCV--RGRLPDGTLLRWRFEKGGEELQLEVQGPITLDEASLARIAVANGVGIGYFM 244

Query: 246 DYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDW 297
           +  ++++     LVRI+ED   P   +   Y     ++   +AF       ARD+
Sbjct: 245 EADIREDIAAGRLVRILEDWTPPLAPLCLYYYNRRNSSAAFQAFI----ALARDY 295


>gi|226328187|ref|ZP_03803705.1| hypothetical protein PROPEN_02079 [Proteus penneri ATCC 35198]
 gi|225203891|gb|EEG86245.1| hypothetical protein PROPEN_02079 [Proteus penneri ATCC 35198]
          Length = 254

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 1/206 (0%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M    ++ RVF  V    SFT AA++L+L+ S++SR +  LE ++G+ L  R  R + LT
Sbjct: 22  MKATSEEARVFVEVVEHKSFTKAADKLNLANSAVSRTVKKLEDKLGVNLLNRTTRQIALT 81

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G    +    +  +++  + EL  +   P G LRI     +  +LL   +  F   YP
Sbjct: 82  SEGELYFQRMKVILQEMQAAENELHGTQRSPKGLLRIDAATPVVLHLLIPFISVFRQQYP 141

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI + L+     +++     D AIR+   +  SSL  R L   H    A+P Y++    P
Sbjct: 142 DIILSLVSSETFVNLIERKVDVAIRVGH-LTDSSLRARPLFNSHRKIIASPKYIERKGFP 200

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFN 206
            + Q L +H  +TF + +        
Sbjct: 201 TTAQMLSEHTCLTFTEPVSLNTWPLE 226


>gi|83951032|ref|ZP_00959765.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
 gi|83838931|gb|EAP78227.1| transcriptional regulator, LysR family protein [Roseovarius
           nubinhibens ISM]
          Length = 299

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 133/288 (46%), Gaps = 9/288 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
             DW+  +   ++A +G+ + AA++   S  ++ R+I+ +E ++G++LF R   G  LT 
Sbjct: 4   KLDWNDYQTVLLIAEAGTLSGAAQRSGTSHPTMFRRINAVEQKLGVRLFERFRTGYRLTS 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G ++     E+      T+  +    ++PSG + +ATT  L   LL   +     + PD
Sbjct: 64  AGEEVATTAREIEELTNATERRVAGRDLRPSGIVHLATTDSLLWGLLAPEIAHLRHVEPD 123

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I + + + N+  D+S   AD AIR     +   LI R+L  I    YAA          L
Sbjct: 124 IVLDVTVSNEISDLSFREADIAIRPASAPED-HLIGRRLGRIRQAVYAARS--------L 174

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
            + E D+ N      + P     +  L    R  G       + +S LS++     G+G+
Sbjct: 175 DLSEGDQSNWAGLPWIGPNASMSYPQLHAWMRASGVEARCVAKTDSVLSMLAAVRAGTGV 234

Query: 242 ALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           A+LP Y+   +P+L R+  ++      ++      L++T +++A  +F
Sbjct: 235 AILPCYLADPDPDLRRLGPEIEDLGVDLWMLTHPDLRHTARVRAVLDF 282


>gi|76809415|ref|YP_331745.1| LysR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|254188235|ref|ZP_04894747.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254261447|ref|ZP_04952501.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
 gi|76578868|gb|ABA48343.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710b]
 gi|157935915|gb|EDO91585.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254220136|gb|EET09520.1| transcriptional regulator, LysR family [Burkholderia pseudomallei
           1710a]
          Length = 322

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 127/300 (42%), Gaps = 12/300 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F      GS + AA +L  + S++++ I+GLE  +G++L  R  R L LTE G 
Sbjct: 7   LSALETFVCAVEEGSLSQAARRLAKTPSAVTKAIAGLEATLGVQLLERTTRRLALTESGR 66

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 ++V  +L     +L E   +P G LR+      G  +L      F   +P ++I
Sbjct: 67  LYLATATDVLRRLADGARQLSERDDEPRGLLRVTAAHSFGHAILAPLCAPFAQAFPRVRI 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L L +  +DI  +  D A+R+      S ++ + + +      A+P YL     P +  
Sbjct: 127 ELSLSDHYVDIVGEGFDLALRMGNYDLPSQIV-KPIGSNRGLLCASPGYLARRGRPTAPA 185

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H+ + +    P     + +     R   EP+   L  + Y   +   + G+G+   
Sbjct: 186 DLAQHDCVIYRH--PTLANTWTFERGGVRARLEPK-GPLVTDDYGLALAAALYGAGVLPC 242

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLKAFRNFIFLKARD 296
           P + V D      LV ++ D    S +     +   YP + + + K++     +  +  D
Sbjct: 243 PQWSVVDALEAGRLVPLLVDWRFESASFGEDRICAAYPSSRRGSTKIRRLVERVQARLAD 302


>gi|13471758|ref|NP_103325.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022502|dbj|BAB49111.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 299

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 118/290 (40%), Gaps = 12/290 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  +F  AAE+L+++Q ++++ I GLET +G KLF R  RGL LT+QG 
Sbjct: 11  LNALRAFEASARHLNFRIAAEELNVTQGAVAQHIRGLETHLGTKLFERLPRGLALTDQGR 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                    +  +    + L+        +L I+ T       L   L++F+   P + +
Sbjct: 71  AYVPNIRRAFDLISEATLLLRPEPA----RLTISVTPSFATKWLIPRLQDFMADNPLVDL 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +++          D  D A+R  +P   + L+   L    + A  +P  L      +   
Sbjct: 127 RVLASESLSSFQADGVDIAVRQGRPPFGAGLVVDLLFPQQIIAICSPALLPAGATEIPAA 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           E+  H L+     +        ++  V        +  ++ N     +   + G GIAL 
Sbjct: 187 EIQHHVLLHDAHNL-----WPEFMEKVVGLKMTAELKRMRFNQTSLAIDAAIAGQGIALA 241

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             ++V  +     LV+ +   +  +   +   P   ++    +A R ++ 
Sbjct: 242 SRFLVAADLAAGRLVQPVSGEMRGTQDFHVVMPRKQRHPEPTQAVRQWLL 291


>gi|170738903|ref|YP_001767558.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168193177|gb|ACA15124.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46]
          Length = 300

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 117/301 (38%), Gaps = 13/301 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      + VF+ VARSGS T AAE+L ++ S++S+QI  LE  +G  L  +  R + LT
Sbjct: 1   MPVPLRAITVFHAVARSGSITRAAEELGVTPSAVSQQIQTLEVGLGTALIGKAGRNVVLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           E G +   +      ++      +Q         L +  T  L    L   L  FL  +P
Sbjct: 61  EAGERYFEMIGGEIDRIMEATQRIQGFRSVT--TLTVRATPSLSTKWLLPRLARFLDAHP 118

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           D++++L   N+      +  D  IR         L    LV        AP  L      
Sbjct: 119 DLELRLDGTNEPTAFQKESVDIEIRHGTGGW-PGLYAEGLVEECFRPVCAPA-LAAPGS- 175

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+  EL +H LI     +   M+  +W           R   L  +     +     G G
Sbjct: 176 LAPGELHRHRLIH---SVKSQMQWAHWFKLAG-TAPAARWRRLLFDRTHMAIDAAAGGLG 231

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTV----YFCYPEALKNTGKLKAFRNFIFLKARD 296
           IAL  D ++ D+    R+   V  P  T     +   P       K++AF ++I  +  +
Sbjct: 232 IALESDLMLWDDLRSGRLACPVRDPPRTALVTQWVTCPPDHLRLRKVQAFLDWIRRERDE 291

Query: 297 W 297
           W
Sbjct: 292 W 292


>gi|77918693|ref|YP_356508.1| LysR family transcriptional regulator [Pelobacter carbinolicus DSM
           2380]
 gi|77544776|gb|ABA88338.1| transcriptional regulator, LysR family [Pelobacter carbinolicus DSM
           2380]
          Length = 300

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 130/294 (44%), Gaps = 9/294 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +W+ +R F  ++R+ SF  AA QL ++ S++SR+IS LET +  KLF R  +G  LT
Sbjct: 1   MDQNWNDIRFFLALSRTTSFVSAATQLKVTHSTVSRRISALETALQTKLFVRTEKGCRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G +L  +  E+       Q  + +   + SG +RIAT   LG   L   +       P
Sbjct: 61  SAGEQLLPLAEELEKAALKFQEHVPDRDNQLSGTIRIATPDGLGHCFLASRINALQSKNP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++I+LI       +S    D  I ++KP     +I R++       +A+  YL+     
Sbjct: 121 LLEIELIAVPMYYSLSKREVDILITVKKPTVD-RIIARRITNYRFGLFASREYLEGFPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L +H  + + D +      ++              +  + ++ ++ M     G+G
Sbjct: 180 QKFGDLAEHRFVGYIDDL-----LYDQKLRFLEEYSPALKTSFRSSTIIAQMNALKAGAG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYF-CYPEALKNTGKLKAFRNFIFLK 293
           I ++P ++     +LV ++ +        +    P++ K   +++   +FI  +
Sbjct: 235 IGVIPYFMAHTERDLVPVLPENYL-EREFWLQVNPDSKKL-ARVREAIDFIVEQ 286


>gi|294142519|ref|YP_003558497.1| LysR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328988|dbj|BAJ03719.1| transcriptional regulator, LysR family [Shewanella violacea DSS12]
          Length = 302

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 120/290 (41%), Gaps = 8/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L +   +A   S + A  +L ++ ++ S  +  LE ++  +LF R  R + LT++G 
Sbjct: 4   LKDLHLAIRIADLHSISAAGRELGMTPAAASAALQRLEKQIDCQLFSRSTRSMKLTQEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                  +    L      L ++  +  G++RIA   DLG+NL++G L +F    P++ +
Sbjct: 64  VFIDTGRQALELLAGASTVLADNRGELKGEIRIALPSDLGRNLIRGWLDDFANQAPELTL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L   +   D+       A+R  + ++ SSL +R+L  IH  A A+P YL     P    
Sbjct: 124 TLFFGDHMSDLINQNLHLALRYGQ-LEDSSLKRRQLAMIHRVAIASPDYLAKSGIPKHPN 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQV-NSYLSIMQYCVLGSGIAL 243
           EL++H ++              W  +      E  +   ++ N    I  + + G GIA 
Sbjct: 183 ELNQHKILILN---RGGEPWNKWRFSHKGAGYEVHVRGNKICNDGAVIRDWALAGEGIAY 239

Query: 244 LPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
                V  +     LV +  D +     +   Y        K++   +FI
Sbjct: 240 KSWLDVAADVHQGRLVLLFPDQLAEKIPLQLVYLHTDYPRLKIRKTIDFI 289


>gi|167574294|ref|ZP_02367168.1| gp58 [Burkholderia oklahomensis C6786]
          Length = 299

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 121/290 (41%), Gaps = 7/290 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   AR G+FT AAE+L ++Q ++S+Q+  LET +G+ LF R A+ L LT  G 
Sbjct: 11  LQCLVFFDAAARHGNFTRAAEELSVTQGAVSKQVVKLETFLGMTLFVRDAKALHLTRAGQ 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +          + +        + IA         L   + EF   +P++ +
Sbjct: 71  QYADRVHAILADCAEATALVMKEQTPH--SITIACASGTATLFLADRIAEFSADHPEVSV 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++++     +++    D  +   + +    ++  +++   +HAY AP +L   R P   Q
Sbjct: 129 RILVREGVFNLNAAEFDIGVYYIRDVPPPGIVGTRIIEEDVHAYCAPAFLGGHRVP--PQ 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           EL    L+   +   + M   +W       IG      +  NSY  ++Q  + G G+ L 
Sbjct: 187 ELMGATLLVAEEQQRQWMGWRDWFRLTAGEIGFRPARTIAANSYPVLLQLALRGHGVILG 246

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
             +++     +  LV   +   +        +P   ++T  +  FR ++ 
Sbjct: 247 WKHMITPLVQSGQLVLASDAHASFRGAYQVIWPADRRDTPAVTMFREWLL 296


>gi|307546059|ref|YP_003898538.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218083|emb|CBV43353.1| transcriptional regulator, LysR family [Halomonas elongata DSM
           2581]
          Length = 308

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 118/293 (40%), Gaps = 8/293 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L+VF V AR  SFT AAE+LH++  ++S+QI  LE  +G KLF R  R L LTE+G +L 
Sbjct: 13  LKVFAVSARHLSFTRAAEELHVTTGAVSQQIKQLEDRLGFKLFRRLPRRLALTEEGRRLA 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V  + Y  +       +  S   SG +R+ +        L   L      +PDI++ + 
Sbjct: 73  TVVDDAYQAV--GLEVKRLRSGVMSGIIRLRSVPSFLNKWLMPRLPRLQARFPDIELHVT 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            ++    +     D A+ L    Q+  L    L+   +    +P  L+        ++L 
Sbjct: 131 AEDSSTSLREGDFDLALDLNDG-QTPGLAITPLIEETIFPVCSPSLLRGRPPLRRPEDLA 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVD--RPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            + L+          +   W   ++               N     M+  + G G+A+  
Sbjct: 190 WYPLLHDVTAWRGSRDYGEWEHYLEAIEAPSVNVHRGYTFNRNHLTMEAAIAGMGVAIAR 249

Query: 246 DYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
             ++    +   L+  +E  +         Y     +  +++A  +++  +AR
Sbjct: 250 QTLITNELETGALIAPLERRVATGMHYGIVYAAGALDDRRVRAVHDWLVEEAR 302


>gi|148548281|ref|YP_001268383.1| DNA-binding transcriptional regulator DsdC [Pseudomonas putida F1]
 gi|148512339|gb|ABQ79199.1| transcriptional regulator, LysR family [Pseudomonas putida F1]
          Length = 312

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 121/294 (41%), Gaps = 11/294 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L VF V AR  SF+ AA++L L+ S++S +I+ LE E+ +KLF+R  R ++LTE G +L 
Sbjct: 19  LHVFLVAARHLSFSRAADELCLTASAVSHRINRLEDELALKLFHRMPRKVSLTEDGERLF 78

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
            V      +L     E   +  + +G+L +     + Q  L   L +F   YPDIQ+ + 
Sbjct: 79  AVMQRTMDELSEAVQE--RAHAEIAGQLTLYVRPSVAQCWLVPRLAQFTARYPDIQLDIR 136

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           + N+ ID      D  +          L    L+   +    +P Y +       +  LD
Sbjct: 137 VGNEGIDYRTRKIDLVLCYSDG-HHPGLQSIHLMDERIAPVCSPRYAETHALTGDLHPLD 195

Query: 188 KHNLIT---FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
               +      D      E   W  T    I  PR   L  +         +   GIA+ 
Sbjct: 196 HCTALHDVAAWDNAAFDAEWQLWANTTGAGISLPR-RFLTFDRSDLCTLAALNHVGIAIG 254

Query: 245 PDYIVKD---NPNLVRIMEDVI-TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
            + +VKD      LV      + TP+   Y  YP       +L+   +++  +A
Sbjct: 255 REQLVKDRIARGELVLPFGGFVDTPNHGYYLVYPHHDPMPKRLQVLIDWLVKEA 308


>gi|325124090|gb|ADY83613.1| transcriptional regulator, LysR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 297

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 137/298 (45%), Gaps = 10/298 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  DWD L  F V+AR+ + T+AA  + +  S+++R+I  LE  +G  LF R A G  LT
Sbjct: 5   MKVDWDHLHFFLVLARTKTLTNAARIIGVEHSTVARRIQALELALGTTLFKREATGYELT 64

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G  L     ++    E   +++++      G++RI T    G   L   L EF + YP
Sbjct: 65  LEGMALVPRVEQM----EQAFLQIEKPHQPLQGRVRIGTPEGFGTAFLARLLAEFSIQYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + I LI   K I +S   AD  + + +P     +I R L    +  Y + +YL      
Sbjct: 121 LLTIDLIPVPKMIKLSHREADIVVSIDRPTSGPYIITR-LSDYCLKIYGSKNYLAQNPPI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            ++++L +H  + + D +    E +         +     +  + +S L+       G+G
Sbjct: 180 RALEDLTQHRFVNYIDDLVYSPELY-----CLERLPLKLNANFRSSSILAQQIAVSAGAG 234

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +A+LP ++  D   L  ++E  +  + T +      L++  ++K   +++  +A  ++
Sbjct: 235 LAILPKFLADDKQELEEVLEQQVRFTHTFWMLTFVDLQHEPRIKLVWDYLRKQADKYQ 292


>gi|219872131|ref|YP_002476506.1| DNA-binding transcriptional activator GcvA [Haemophilus parasuis
           SH0165]
 gi|219692335|gb|ACL33558.1| DNA-binding transcriptional activator GcvA [Haemophilus parasuis
           SH0165]
          Length = 298

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 61/291 (20%), Positives = 123/291 (42%), Gaps = 14/291 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  +FT AA++L ++Q+++S QI  LE  + I+LF+R  R L LTE G 
Sbjct: 9   LNALKAFESAARHLNFTKAADELFVTQAAVSHQIKLLEDFLNIQLFHRKNRVLELTELGL 68

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +       +  ++     +++  + +    L I+     G + L   L +F   +P I++
Sbjct: 69  QYFDEIRPLLEQIAKATDKIRSKNNRQI--LTISVPQTFGMHWLVPRLSKFHERFPHIEV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D        D AI      +  ++   +L    +   A+P +L+      S +
Sbjct: 127 RIKGVDQDEAQLGKEIDVAIYYGSG-KWENVESIRLTEAPLVILASPKFLEENPL-KSPK 184

Query: 185 ELDKHNLITF--GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +L    L+     +   + +E F     +D     P       +     +Q  +   GIA
Sbjct: 185 DLIGKTLLHVFSRNKWKRTIEYFGLSEQIDVEEIGP-----IFSHTFMALQAALYQQGIA 239

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +    I +   +  NL+      +    + Y  YP  + +  K++ F ++I
Sbjct: 240 IANKTIAQHELEQGNLIEPFSTGLNDEKSFYVVYPSQISDNPKVQHFVDWI 290


>gi|34496846|ref|NP_901061.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34102702|gb|AAQ59067.1| probable transcriptional regulator [Chromobacterium violaceum ATCC
           12472]
          Length = 295

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 123/295 (41%), Gaps = 8/295 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  +   L VF     +GSF  AA  L L+ S +S  +S LE+ +G+ L YR  R L+LT
Sbjct: 1   MIDELRALAVFAKTTETGSFRAAARALGLAPSVVSHHVSQLESRLGVALLYRSTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             G  L+     +    ET   EL   + +P+G LR++      +  L  +L  F   +P
Sbjct: 61  PDGQALYGHAQAMLQAAETGLNELAGRAAEPAGTLRLSLPAFFARGPLTTSLAAFSRCHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            ++++L   ++  D+  D  D AIR+ + +Q S+L  R+L  +     AAP  L    EP
Sbjct: 121 KVELELDYSDEKRDLIRDGIDLAIRIGE-LQDSALKSRRLFDMPRLLVAAPSLLDARGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S  EL     +     I    +    +    R         +  NS  +  Q  + G G
Sbjct: 180 ASPAELADWPWLG----IRMRAKRKTLIDAAGRRHDFAIQPRITANSVDAACQLAIAGCG 235

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +A  P ++V++      L  ++ D    +  VY  +P              F+  
Sbjct: 236 LATPPAFLVENELAAGQLRVVLPDCQVEALGVYAVWPANAARESLTLRLVRFLAE 290


>gi|332526830|ref|ZP_08402930.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332111231|gb|EGJ11263.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 314

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 122/286 (42%), Gaps = 6/286 (2%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F  +  +GS + AA  L  +Q +ISR++  LE  +G+ L  R    +  TE G 
Sbjct: 11  LELLQTFVRIVDAGSLSAAAVALGTTQPTISRRLQQLERSLGLTLLQRSTHSMAPTEDGQ 70

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           + +     +  + +  + +L+     P G+LR+      GQ  L   L +FL  +P++ +
Sbjct: 71  RCYEHARSLLERWDAAEADLRGVQDVPRGRLRVVVPHAFGQQQLVVPLLDFLRRHPEVSV 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           + +L ++  D      DCAIR+   +    L+  +L  +     AAP    +   P   +
Sbjct: 131 EWLLHDRLPDFIGQGVDCAIRVGA-VDEPGLVAVRLAEVPRLVVAAPGLWGDGPPPAEPE 189

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L     +  G      +E  +  ++  R +       L  +S  ++ +    G+G A++
Sbjct: 190 ALAALPWLAAGSFYRDEIELQDRRSSEWRRLAIQ--PRLTTDSLYALREAARGGAGAAII 247

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
             ++V ++     LV +  D       V   +P A     +L+AF 
Sbjct: 248 SSWLVAEDLAAGRLVHLAPDWRAAPLPVVLLHPPARLQPARLRAFI 293


>gi|222084990|ref|YP_002543519.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722438|gb|ACM25594.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 274

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 127/271 (46%), Gaps = 5/271 (1%)

Query: 27  LHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKLETTQIELQE 86
           ++LS+S+I + I+ LE  + ++LF+R  R  +LT++G   +        ++++ +  L+ 
Sbjct: 1   MNLSRSAIGKTIAKLERRLSVRLFHRTTRTQSLTDEGQAFYERCRRALDEIQSGEAMLES 60

Query: 87  SSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISMDYADCAIRL 146
              + +G+LRI+  +  G+  +   L E    +P++++ L   ++ +D+  +  D AIR 
Sbjct: 61  GKREVAGRLRISMPVLFGRRCIAPLLMELARAHPNLELDLSFSDRVVDLLDEGFDLAIRN 120

Query: 147 RKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDLIPKCMEDFN 206
                S+ L+ R++    M   A+P YL     P +I +L+ H+LI +       +  F 
Sbjct: 121 GPLRDSAGLVTRRVARHRMVVCASPAYLAKRGTPQAIADLEDHDLIAYARAGEVKIWTFP 180

Query: 207 WLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN---PNLVRIMEDVI 263
               VD        + L+ +    +      G G ALLP ++++      NL  ++ D+ 
Sbjct: 181 RADGVDIEYMPK--TRLRFDDLEVMADAAAAGMGAALLPCWLIRGQVLAGNLAPVLTDLS 238

Query: 264 TPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +F  Y  +P+      K +A  + +  + 
Sbjct: 239 GLTFHAYAVWPQTPHLPLKTRAVIDLLAARL 269


>gi|330807378|ref|YP_004351840.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375486|gb|AEA66836.1| Putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 315

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 126/292 (43%), Gaps = 7/292 (2%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRH-ARGLTLT 60
           S +WD L+ F  VAR+   + AA++L +  +++SR+IS LE  +G  LF +    G  LT
Sbjct: 10  SLNWDDLKFFLEVARTRKASTAAKRLAVDYTTVSRRISSLEASLGTLLFEKSRTNGFVLT 69

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L      +   L     ++  S V  SG +R+  T   G   +   L  F+  YP
Sbjct: 70  AEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDAYP 129

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            I + ++     I +S   AD  I L +P +    +  KL    +  YA   YL N    
Sbjct: 130 AISVDILPLPHFISLSKREADIVIALERP-EHGPYVCCKLCDYRLQLYATQQYLDNHPPI 188

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
               +L KH+ I++ D +    E       +           L+  S ++       G  
Sbjct: 189 RRPADLSKHSFISYVDDLAFSSELLYLANVLPGANAH-----LRSTSVIAQFVAAQQGRS 243

Query: 241 IALLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +A+LP ++   +P L+ ++ + IT +   +    E L+   ++    ++I  
Sbjct: 244 LAILPCFLAAQDPRLLPVLPEDITVTRQFWMYCREDLRKLKRITLLWDYIRE 295


>gi|307319792|ref|ZP_07599216.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
 gi|306894523|gb|EFN25285.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           AK83]
          Length = 310

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 123/294 (41%), Gaps = 17/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +GSF+ AA  L  + S++S+ ++ LE ++G +LF R  R L LT+ G    
Sbjct: 23  LMAFVRTVEAGSFSAAARDLGTTPSAVSKGVARLEKKIGTRLFLRSTRALMLTQDGQLFF 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L  ++  ++     PSG+LRI+   ++   LL      F   YP++ I++ 
Sbjct: 83  DRVAPLLRDLGASEEAIRSDIA-PSGRLRISMPNEMAPLLLPRLFGSFAADYPNLHIEVG 141

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A+R+        ++ R L  + M    +P +LK    P + + L 
Sbjct: 142 LTDRFVDLIREDYDVALRVGNSAPGDYMV-RHLADLPMTIVGSPAFLKTWGNPATAEALA 200

Query: 188 KHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
                 +   G   P  + D        R         +  +S  +++Q  + G G A L
Sbjct: 201 TLPFARYALGGITQPMRLPDGRSFIPSGR---------VDCDSGTALIQAALSGLGAAYL 251

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              +V  +     LV +      PS      +        ++K   +FI  +A+
Sbjct: 252 LRCLVAKDLEGGRLVALATGFSFPSAPFSALHAFGGTVPLRVKLVCDFIAREAK 305


>gi|212635965|ref|YP_002312490.1| regulatory protein LysR:LysR substrate-binding [Shewanella
           piezotolerans WP3]
 gi|212557449|gb|ACJ29903.1| Regulatory protein, LysR:LysR, substrate-binding [Shewanella
           piezotolerans WP3]
          Length = 296

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 123/299 (41%), Gaps = 17/299 (5%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT A+++L ++  ++S+Q+  LE  VG  LF R  R L LT +G 
Sbjct: 8   LNSLRAFESAARLMSFTLASKELFVTHGAVSKQVKILEEYVGTPLFIRQHRSLKLTGEGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                       + +   +L    ++    L I     L  + L   ++EF   +P + +
Sbjct: 68  LYFASVQSALQTINSATADLIVKPLQTQ-SLAINVLPSLTISWLIPRMEEFKSRFPHLYV 126

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            L + + ++D +    D AIR        + +  KL+   +    +P          SI 
Sbjct: 127 DLSIGDFEVDFTNAKYDIAIRSATSTPKGANVM-KLMDEDLCLVCSPEISTRLTSLESIN 185

Query: 185 E--LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           +  L KH   T  DL     +D     T +   G        V  +  + Q    G G+A
Sbjct: 186 QMTLLKHT--TRPDLWQVWADDVGIKLTTENKFG--------VEHFYMLSQAAASGMGVA 235

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           L+P + +++   +  LV   E   T  ++ Y   P +   + K+++F +++      ++
Sbjct: 236 LIPRFFIENELKSGKLVIPFEAKYTSPYSYYLLTPNSRNRSLKVQSFIDWLLELFSPYR 294


>gi|206575917|ref|YP_002237680.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206564975|gb|ACI06751.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 293

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 127/286 (44%), Gaps = 9/286 (3%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
            +WD +R    V R+GS   AA  L++ Q++++R++  +E E+   LF R+  G  LTE 
Sbjct: 1   MNWDNIRYLLAVVRTGSL-RAAVSLNVDQATVARRLRHMEAELNTALFNRYPEGYRLTEY 59

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +L     ++     T + +    +   +GK+ IA+T  LG   L   L      +PDI
Sbjct: 60  GERLLPDIEQMEATAATIERKSAGMNTSLAGKVYIASTDSLGSCFLLPALSALRQRHPDI 119

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           Q+ L    + +DI    AD A+R  +P    +LI R+L T H   YA+  Y+     P+ 
Sbjct: 120 QVTLSTSPEIVDIRRGAADLAVRSARP-SDGNLIIRRLATFHTGLYASEEYVARRGLPVP 178

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
                 H L+ F    P+      W      P+    I  L+V S    ++    G G+ 
Sbjct: 179 GSAFSGHGLVMF----PETSVPQYWQRLCGEPLTNGHI-VLEVTSQWLFIEALRQGLGVG 233

Query: 243 LLPDYIVKD-NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
           ++   IV+   P LV +M    +    ++      + +  +++A  
Sbjct: 234 MMAGEIVQRCCPELVNVMP-TRSEPADIWLVASPDVWSAERIQAVI 278


>gi|116251022|ref|YP_766860.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255670|emb|CAK06751.1| putative LysR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 306

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 132/295 (44%), Gaps = 6/295 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              D++R F  VA  G+ +  A +L + QS+++R ++ LE  VG+ L  R  R +TLT++
Sbjct: 6   LSLDRMRTFVRVAERGNLSMVARELGIGQSTVTRHLNELEEAVGVPLLTRTTRRVTLTDE 65

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           GS+ +    ++   +E    E +++   P+G +R++ T  LG   +   + +F   +PDI
Sbjct: 66  GSRYYTNCLQILRLVEQAAEEARDARQAPAGAVRLSCTAALGVMHITRLIFDFQDKHPDI 125

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++ L L ++ ID+  +  D A+RL  P+  S++    L   H     AP YL     P  
Sbjct: 126 RVDLNLTDERIDLVREGVDLALRLG-PLADSAMKLHALGESHRLLVGAPTYLSVHGRPER 184

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L ++  +   ++     +     +     +  P    L+V+  L+  +    G GI 
Sbjct: 185 PADLSRYETVVMSNVAGS--DQLVLTSPDGTSLMIPVSGKLRVDHGLAAREAFAAGRGIG 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               ++V    D+  L  ++ D    S  V            +++   +F+  + 
Sbjct: 243 PAHLWLVHDLLDDGQLEVVLGDYRPLSVPVSLLIVPERAAIARVRLLVDFLVAEV 297


>gi|209809765|ref|YP_002265304.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
 gi|208011328|emb|CAQ81779.1| HTH-type transcriptional regulator, LysR family [Aliivibrio
           salmonicida LFI1238]
          Length = 305

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 121/294 (41%), Gaps = 11/294 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F + A+S SFT A+EQL L+Q ++S++I  LE ++G  LF R  R L LTE+G 
Sbjct: 8   LTNLYTFNIAAKSLSFTLASEQLFLTQGAVSQRIKQLEEQLGFNLFIRLTRKLELTEEGK 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L  V       + +   ++Q    + SG+L I       Q+ L   L EF  LYP++ +
Sbjct: 68  RLWDVLDTSLEAIFSEIEDIQ--FNELSGELYIGVAPTFAQSWLMPRLPEFQALYPNLDL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++ +    +D   +  D AI     +    L   KL   ++     P Y+     P  + 
Sbjct: 126 KIRVKASPLDFKHEPVDLAIYYSNGLH-PDLHCEKLFDEYLTPICTPEYVNKL--PKDVF 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISC--LQVNSYLSIMQYCVLGSGIA 242
            +D   LI   + +     DF W   +        +       N     +     G GI 
Sbjct: 183 NIDAVCLIHCTESLESIRTDFEWTYWLSMTNNPTPVQSNNYVFNHSEMAISAVRNGMGIG 242

Query: 243 LLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           +    +V    +N  LV   E  I  + +     P+  +   K +AF  ++  K
Sbjct: 243 IARTRLVDTYLNNGELVTPFE-AIPSNLSYNLICPKGQELRPKYQAFTRWLRTK 295


>gi|218710114|ref|YP_002417735.1| hypothetical protein VS_2135 [Vibrio splendidus LGP32]
 gi|218323133|emb|CAV19310.1| similar to transcriptional regulator, LysR family [Vibrio
           splendidus LGP32]
          Length = 319

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/275 (26%), Positives = 134/275 (48%), Gaps = 7/275 (2%)

Query: 18  GSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEVYHKL 77
           GSF   AEQ ++ +S IS+QIS LE E+ ++L  R  R L+LT  G+++     ++   L
Sbjct: 17  GSFVKVAEQRNVDRSVISKQISRLEEELDVRLLNRTTRSLSLTAAGNEMVNQAHQLRALL 76

Query: 78  ETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDIDISM 137
             T+   Q    +P G LRI ++   G+  +Q  +  F   YPD+  +L L+++ +D+  
Sbjct: 77  NDTRRLAQNYHAEPRGLLRITSSTMFGRQYVQQAIAVFQKQYPDVDFELRLEDRIVDMVK 136

Query: 138 DYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLITFGDL 197
           +  D   R+ KP ++SSLI RK+    +   A+P ++    E  +I++L+      +   
Sbjct: 137 EGFDIGFRIGKP-KNSSLISRKIARSRLLIVASPEFIAQHGEINTIEKLESLPATIYA-A 194

Query: 198 IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKD---NPN 254
               ++ F+++    +       +  +VN    I +  + GS +A++   +++D   +  
Sbjct: 195 PGLLIDKFSYVDQEGQAQHFQLNAAYKVNDVEMISKSALTGSTLAVVTAQMIEDEVLSGE 254

Query: 255 LVRIMEDVITPSF-TVYFCYPEALKNTGKLKAFRN 288
           LV IM  +    F T Y  YP       K K F +
Sbjct: 255 LVPIMTHLNLDDFGTFYAVYPHRDA-PIKTKLFID 288


>gi|160896417|ref|YP_001561999.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362001|gb|ABX33614.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1]
          Length = 302

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 117/293 (39%), Gaps = 10/293 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L++   + R  S + AA  L ++  ++S ++  LE E+G+ L  R AR L LT +G 
Sbjct: 4   IEDLQLAAALLRESSLSAAARALDVTPPALSMRLRRLEAELGLSLANRSARRLALTPEGE 63

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  R    +  ++E  +  L   + +  G LRIA     G++ L   L  F   +P +++
Sbjct: 64  RFAREAVRLLGQIEELRDSLHGDARQLGGTLRIAAPFGYGRSRLAPALVPFTRQHPQLKL 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           QL L           AD  + +   ++ SS + R+L        A+P YL+    P + +
Sbjct: 124 QLDLRETPF-PDRHDADAVVHIGA-VRDSSWVARELAANDRWLCASPDYLRRHGTPATPR 181

Query: 185 ELDKHNLITFG----DLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           EL +H  I       D+    +         D             N       +   G G
Sbjct: 182 ELLEHACICIRENEEDVTLWHLRPAASRRAADGQTLRV-TPSYVTNDGGVARHWAEQGLG 240

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           + L   + ++       LVR++ D    S  V    P     T +++A   F+
Sbjct: 241 LVLRSQWDMEQAVAEGRLVRVLPDWHFGSAPVTLLVPTRKGRTARVQALVTFL 293


>gi|260777132|ref|ZP_05886026.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606798|gb|EEX33072.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 297

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 129/297 (43%), Gaps = 13/297 (4%)

Query: 3   FDW-DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW   ++ +  V   GSF  AA +++ + S+IS+++  LE  +G++L  R  R +T TE
Sbjct: 1   MDWIQSVQSYIRVVDEGSFNGAARKMNTTSSAISKRVHWLEERIGVQLLKRTTRTVTQTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G+  +          ++   E +  +  P+G L+I  TI +G   L   L +FL +YPD
Sbjct: 61  AGALFYERAKVQLDGWQSIVDETRSVNQTPAGLLKIGATIAVGSKFLVQYLDDFLQMYPD 120

Query: 122 IQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           I+IQLI       +     D  I R  + + S S     L       YA+P YL    EP
Sbjct: 121 IRIQLITT-TPGQLPELSLDLFISREIEQLNSLSFKASALFEHKAGFYASPEYLDKYGEP 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
            S+ EL  HN + +G+   + +       T+           L   +  ++        G
Sbjct: 180 QSVDELTGHNTLIWGERPHREI-------TLTNGKKIILSGNLATTNPEALFYAAKNAMG 232

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I +  D ++KD      L RI+  +     TVY  YP+      + K F +++  + 
Sbjct: 233 ILISNDVMIKDELKAGTLKRILPRITADEATVYAYYPKLDYQHTRTKLFLDYLKERL 289


>gi|34496151|ref|NP_900366.1| transcription regulator protein [Chromobacterium violaceum ATCC
           12472]
 gi|34330284|gb|AAQ58372.2| transcription regulator protein [Chromobacterium violaceum ATCC
           12472]
          Length = 292

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 114/289 (39%), Gaps = 13/289 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   A   SF+ AAE LH++  ++SRQI  LE  +G  LF RH R + LT+ G 
Sbjct: 8   LNALRAFEAAAVRQSFSEAAELLHVTHGAVSRQIRLLEAWLGTPLFERHHRQVRLTDAGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                      ++ET    L++  +     LR+          L   L  F L +P +++
Sbjct: 68  GYLADVRAALERIETASARLRQGPLP----LRVNAPATFTLRWLIPRLSRFQLAHPHVEV 123

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   ++ +    D  + AIR   P      I  + +        +P  L+      S  
Sbjct: 124 KLTTSSEPVAQLADSFEVAIR-GGPQALPGFIAHEFLQESRLPVCSPGLLERL-PLASPA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+              WL     P  +P  S L +  +   +Q  + G G+AL 
Sbjct: 182 DLVRHTLLH---TAGSPEFWPQWLDAAGVPDLQPAAS-LTLEHFYLTLQAALDGLGVALG 237

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           P  ++ D+     LV+         +  +   PE       + AF  ++
Sbjct: 238 PSRLIADDLAAGRLVQPFAGPRLEDWRYFAYVPETRDGHPAVAAFCRWL 286


>gi|241205400|ref|YP_002976496.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859290|gb|ACS56957.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 294

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 121/291 (41%), Gaps = 12/291 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LR F   AR  SFT AA +L ++Q+++S+Q+  LE  +G  LF R  RGL +T +G 
Sbjct: 8   LNGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKSLEKRLGAALFQRLPRGLKITAEGE 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
            L    +  + ++      ++   V+    L +          L   L +F   +P I +
Sbjct: 68  ALLPTLTISFDQMAIMLDRIEAGQVREL--LFLGVVGTFAVGWLLPRLSDFQQQHPFIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++  +N  +D++ +  D AIR        +    +L    +     P   +  +   S  
Sbjct: 126 RVSTNNNRVDMAAEGLDFAIRFGSGSWHGT-EALRLFDAPLSPLCTPKLAERLK---SPA 181

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +  L+       +  E   W    D P      + +  +S L++M+  + G GIAL 
Sbjct: 182 DLVEATLL----RSYRADEWSTWFTAADVPPAAQINAGIVFDSSLAMMEAALQGLGIALA 237

Query: 245 PDYIVKDNPNLVRIMEDVITPS--FTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  +   + +   + +   T     + +    ++   T  + AF ++I  +
Sbjct: 238 PPSMFSRHLSSGAVRQPFPTTISLGSYWLTRLQSRPPTAAMLAFSDWITSQ 288


>gi|16264912|ref|NP_437704.1| putative transcriptional regulator, lysR family protein
           [Sinorhizobium meliloti 1021]
 gi|15141051|emb|CAC49564.1| putative transcriptional regulator, lysR family protein
           [Sinorhizobium meliloti 1021]
          Length = 298

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 123/294 (41%), Gaps = 17/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +GSF+ AA  L  + S++S+ ++ LE ++G +LF R  R L LT+ G    
Sbjct: 11  LMAFVRTVEAGSFSAAARDLGTTPSAVSKGVARLEKKIGTRLFLRSTRALMLTQDGQLFF 70

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L  ++  ++     PSG+LRI+   ++   LL      F   YP++ I++ 
Sbjct: 71  DRVAPLLRDLGASEEAIRSDIA-PSGRLRISMPNEMAPLLLPRLFGSFAADYPNLHIEVG 129

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A+R+        ++ R L  + M    +P +LK    P + + L 
Sbjct: 130 LTDRFVDLIREDYDVALRVGNSAPGDYMV-RHLADLPMTIVGSPAFLKTWGNPATAEALA 188

Query: 188 KHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
                 +   G   P  + D        R         +  +S  +++Q  + G G A L
Sbjct: 189 ALPFARYALGGITQPMRLPDGRSFIPSGR---------VDCDSGTALIQAALSGLGAAYL 239

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              +V  +     LV +      PS      +        ++K   +FI  +A+
Sbjct: 240 LRCLVAKDLEGGRLVALATGFSFPSAPFSALHAFGGTVPLRVKLVCDFIAREAK 293


>gi|222112510|ref|YP_002554774.1| LysR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221731954|gb|ACM34774.1| transcriptional regulator, LysR family [Acidovorax ebreus TPSY]
          Length = 308

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 122/292 (41%), Gaps = 10/292 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              LR F  VAR G  + AAE LHL+QS++S+Q+  LE  VG+ LF R  + L+LT  G 
Sbjct: 10  LHLLRAFCTVARFGGISRAAEALHLTQSAVSKQVQELERWVGVPLFERSRKRLSLTPAGE 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +  +  S +  +LE   +EL  S  +  G L ++    L    L   L +    +P I +
Sbjct: 70  RYEKAVSALLARLEAATLELITSGDEG-GALHLSVLPTLAAKWLIPRLPQLRAQHPQITL 128

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
             +      D +    DC+I               L    +        L       S Q
Sbjct: 129 HFVPYVHGYDFADPELDCSILFGDG-HWPGARAHYLTGNDVALIGPRAGLAGAPPLHSPQ 187

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           ++ +H L+     +P   + +   A      G   ++  Q + + +I++   +G G+AL+
Sbjct: 188 DVARHTLLRHVS-VPGAWQHW---AEAHGVNGLDPLAGPQFDQFQTIIRAVSVGMGLALV 243

Query: 245 PDYIVKDNPNLVRIMEDVI----TPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           P  +V+D      + E +     T     + CYPE+      L  FR+++  
Sbjct: 244 PRCLVQDEIAAGTVTEPLPGGGYTSDLGYWLCYPESRAQLATLVRFRDWLLA 295


>gi|325272230|ref|ZP_08138650.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324102636|gb|EGC00063.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 301

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 14/293 (4%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D   +++ F  VA   SF  AA  L  S S+++R +  LE   G KL  R+A  +TL
Sbjct: 1   MALDMLREIQAFVSVAHKRSFVAAARALGRSPSAVTRAVQTLEDNAGSKLLNRNANAVTL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           T  G +L      +         EL   S    G +R A    L ++LL   L +F   +
Sbjct: 61  TAAGERLLPHAERLLDVQRDAADELAALSGNAQGWIRFAVPQLLAEHLLPQVLADFSRRH 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
           P + + +   ++ +D  +   D A+R   P QSS LI   L     H YA+P YL     
Sbjct: 121 PQVTLDVQYSDEALDPLLGKLDFAVRGAFP-QSSELIGYPLWPYQRHLYASPAYLALAGT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
           P   ++L+ H+LI      P+ ++ +++          PR   L++ S  ++    + G+
Sbjct: 180 PAHPEQLEGHSLILH--TAPRILKAWHFCRDGQITSVRPR-PRLRLASGTAVYHGALAGA 236

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFT-----VYFCYPEALKNTGKLK 284
           GIA L  ++ +       LVR+       S T     ++  YP       +++
Sbjct: 237 GIARLAAWVGEAQVKAGRLVRVCAPYRLTSSTGQDPQMHAVYPAGD-LPARVR 288


>gi|270262597|ref|ZP_06190868.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043281|gb|EFA16374.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 294

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 121/292 (41%), Gaps = 7/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           +R+F  V   GS + AA  L + Q ++S +I  LE  +G +L  R+ R ++LT  G+  +
Sbjct: 1   MRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTHSGNLFY 60

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
             +       E      +E+     G +RIA     G++LL   L +    +P +Q+ +I
Sbjct: 61  ERSKTAIQAAEHALSVNEENQG-LQGTIRIAAPYSAGESLLMPALLQLQNEHPGLQVDVI 119

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
            +++ ID   +  D ++RL   +     + R L T+     A+P  L     P S   L 
Sbjct: 120 FNDRVIDPVTEGVDLSLRLGD-VSEGFFVARPLSTVRRVLLASPALLAKMGYPPSPDALA 178

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
            +       +          + + D+ I  P     Q   + S++ Y + G  I +L   
Sbjct: 179 DYPFAAVSGVF--ASNRIQLITSEDQLINVPVNVKFQSTHWRSVLTYLLAGHAIGVLQFP 236

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
             ++      L+ ++     P F+ Y  +P A   + + +   + +    RD
Sbjct: 237 ACRNEIEKGVLIPLLSHYQIPPFSAYLLHPPAGMMSYETRMCASLLEGYLRD 288


>gi|115353108|ref|YP_774947.1| DNA-binding transcriptional activator GcvA [Burkholderia ambifaria
           AMMD]
 gi|115283096|gb|ABI88613.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           AMMD]
          Length = 294

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 126/292 (43%), Gaps = 13/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F   AR  SF+ A ++LH++  +ISRQI+G E  +G  +F+R+ + + LT++G 
Sbjct: 8   FSALRAFEAAARHESFSAAGDELHVTHGAISRQIAGFEAWLGKPVFHRYGKRVRLTDEGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +  +     +L+ +       LRI          L   L  F    P++++
Sbjct: 68  RYLDTVRAAFDSIALATEQLRNTGAAR--VLRINALPTFAMKWLLPRLSRFQRDVPNVEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N  +D ++D  D AIR R P    +      +   +    +P  LK         
Sbjct: 126 KLSTSNAPLD-ALDGFDVAIR-RGPGHWPNCTSGHFLDESVIPVCSPALLKRA-PITRAD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+   D  P+   D+ + A    P G  R S    + +   +Q  V G G+AL 
Sbjct: 183 DLARHVLLH-SDTRPEGWRDW-FAAAGVTPKGRKRQS---FDHFYLALQAAVDGLGVALG 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  ++ D   +  LV  ++     + + ++  P A  +   +  F  ++  +
Sbjct: 238 PLPLIDDELASGRLVMPLDGPRIATRSYWWIAPRAPADDPLVAQFCAWLQAQ 289


>gi|304396676|ref|ZP_07378556.1| transcriptional regulator, LysR family [Pantoea sp. aB]
 gi|304355472|gb|EFM19839.1| transcriptional regulator, LysR family [Pantoea sp. aB]
          Length = 275

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 115/276 (41%), Gaps = 11/276 (3%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + LRVF   AR  SFT AAE+L ++Q+++S QI  LE  +G+KLF R  R L LTE+G 
Sbjct: 8   LNALRVFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
             +    E++  +     +LQ  S    G L ++         L   L  F + YP I +
Sbjct: 68  SYYLDIKEIFSAINEATRKLQARSA--KGALTVSLLPSFAIQWLVPRLSSFNMAYPGIDV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           ++   ++D +   D  D AI   +      L   KL   ++    +P  +       +  
Sbjct: 126 RIQAVDRDEEKLADDVDVAIFYGRG-NWPGLRVEKLYAEYLLPVCSPSLMTGDNPLKTPM 184

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +  L+          +  +++  +       +   +  +    ++Q  + G G+AL 
Sbjct: 185 DLSRFTLLHDASR----RDWQSYIRQLGLQHINVQQGPI-FSHSAMVLQAAIHGQGVALA 239

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEAL 277
            + + +   +   L+    DV+      Y    ++ 
Sbjct: 240 NNVMAQSEIEAGRLICPFNDVLVSKNAFYLVCHDSQ 275


>gi|170718058|ref|YP_001785096.1| DNA-binding transcriptional activator GcvA [Haemophilus somnus
           2336]
 gi|168826187|gb|ACA31558.1| transcriptional regulator, LysR family [Haemophilus somnus 2336]
          Length = 297

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 123/291 (42%), Gaps = 14/291 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+ F   AR  SFT AA++L ++Q+++S QI  LE  +G+ LF R  R L LT+ G 
Sbjct: 8   LNSLKSFESSARHLSFTKAADELFVTQAAVSHQIKLLEDFLGVILFKRKNRTLELTDLGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
                 S++ + L     +L     +    L I+     G   L   L EF   YPDI++
Sbjct: 68  AYFSDVSKILNNLADATTKLMAQKNEQY--LSISVPQTFGMQWLVPKLSEFNQRYPDIEV 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS-I 183
           +L   ++D     +  D AI   K      L   KL    +   A+P  L    +P++  
Sbjct: 126 RLKGVDQDEIPLSNEIDIAIYYGKG-NWEGLQVEKLAEAKLLILASPKLLAK--QPVTQA 182

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L +HNLI          +++  +A + +            +     +Q  V G GI L
Sbjct: 183 TDLYQHNLIHV-----HTRDNWRNMANLLQLDKLDIRHGPVFSHTFMALQAAVHGQGIVL 237

Query: 244 LPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIF 291
               + +   +N NL  ++   +    + Y        NT ++ AFR +I 
Sbjct: 238 ANKILAQHEIENGNLQVVLSISLPDPKSFYVVNSLNRTNTEQINAFRQWIM 288


>gi|161521671|ref|YP_001585098.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352163|ref|YP_001947790.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160345721|gb|ABX18806.1| transcriptional regulator, LysR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336185|dbj|BAG45254.1| LysR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 323

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 128/299 (42%), Gaps = 11/299 (3%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M      +  F  V  SGSF  AA ++ +++S++++ ++ LE  +G++L  R  R L LT
Sbjct: 1   MDERLRGVAEFVEVVESGSFAAAALRIGVTRSAVAKVVARLERRLGVRLLQRTTRQLNLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           ++G   +     +  +L  T+  L     +PSG+LRI+  +  G+  +   ++  +  +P
Sbjct: 61  DEGHLYYEQCRRLLAELGDTEAALDAGRREPSGRLRISVPVLFGRQCVAPVMRRLVERHP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            +++ +   ++  D+  D  D A+R+     +++L+ R+L    M   A+P YL     P
Sbjct: 121 RLEVDMSFSDRVADLIDDGFDIAVRIGVLADTTALVARRLGVQRMGICASPAYLDRHGWP 180

Query: 181 LSIQELDKHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVL 237
                L  H  I +   G  +P  +   +      R  G  R   LQ  +  +     + 
Sbjct: 181 SGPDALASHVGIPYARGGQPVPWRIIGADGEVREHRVTGRLRYDDLQAIAEAAAAGAGLA 240

Query: 238 GSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
                 LP +++     +  L  +M+        V    P+A     K++   + +  +
Sbjct: 241 -----WLPCWLMAPYLRDGRLALVMDSNSVSGADVSAVRPQARHVPSKVRVAIDALVDE 294


>gi|293610626|ref|ZP_06692926.1| predicted protein [Acinetobacter sp. SH024]
 gi|292826970|gb|EFF85335.1| predicted protein [Acinetobacter sp. SH024]
          Length = 309

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 128/299 (42%), Gaps = 6/299 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M   +D    FY+V + G F+ A++  ++S+S +SR+I  LE +  + L  R  R   +T
Sbjct: 1   MISSFDDFYYFYLVVKHGGFSAASDAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
           + G + +    +V  ++E  +  L +   +P G ++++    +    ++  L +FL  YP
Sbjct: 61  DLGQEFYEECCKVITQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLR-KPIQSSSLIQRKLVTIHMHAYAAPHYLKNCRE 179
            ++I L L ++ +DI  D  D AIR   +P + S+LI R ++       A+P  L+  R 
Sbjct: 121 KVEIALELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTDHCLVASPELLQG-RT 179

Query: 180 PLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGS 239
                EL     I+ G      +     +      +  P    ++ N    +    + G 
Sbjct: 180 IKHYSELQDFPSISLGTQKQNPIWHLCNIRN-GESVDVPYQPRIKSNDLAGVYYAVMDGL 238

Query: 240 GIALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           GIA LP   V+       L+ I+ D  +   T+   Y         ++     +  + R
Sbjct: 239 GIADLPFLTVESEIRKGTLIHILPDWKSNIGTLQLVYVSRKGQRLVVEKLIETLIDELR 297


>gi|307312309|ref|ZP_07591944.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
 gi|306899478|gb|EFN30109.1| transcriptional regulator, LysR family [Sinorhizobium meliloti
           BL225C]
          Length = 310

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 123/294 (41%), Gaps = 17/294 (5%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F     +GSF+ AA  L  + S++S+ ++ LE ++G +LF R  R L LT+ G    
Sbjct: 23  LMAFVRTVEAGSFSAAARDLGTTPSAVSKGVARLEKKIGTRLFLRSTRALMLTQDGQLFF 82

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
              + +   L  ++  ++     PSG+LRI+   ++   LL      F   YP++ I++ 
Sbjct: 83  DRVAPLLRDLGASEEAIRSDIA-PSGRLRISMPNEMAPLLLPRLFGSFAADYPNLHIEVG 141

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
           L ++ +D+  +  D A+R+        ++ R L  + M    +P +LK    P + + L 
Sbjct: 142 LTDRFVDLIREDYDVALRVGNSAPGDYMV-RHLADLPMTIVGSPAFLKTWGNPATAEALA 200

Query: 188 KHNLITF---GDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
                 +   G   P  + D        R         +  +S  +++Q  + G G A L
Sbjct: 201 TLPFARYALGGITQPMRLPDGRSFIPSGR---------VDCDSGTALIQAALSGLGAAYL 251

Query: 245 PDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
              +V    +   LV +      PS      +        ++K   +FI  +A+
Sbjct: 252 LRCLVAKYLEGGRLVALATGFSFPSAPFSALHAFGGTVPLRVKLVCDFIAREAK 305


>gi|126726494|ref|ZP_01742335.1| transcriptional regulator [Rhodobacterales bacterium HTCC2150]
 gi|126704357|gb|EBA03449.1| transcriptional regulator [Rhodobacterales bacterium HTCC2150]
          Length = 304

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 13/293 (4%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
             L VF   AR GSFT AA++L++ Q SIS  I  LET + ++LFYR  R ++LT  G +
Sbjct: 12  RHLMVFEAAARLGSFTRAAQELNVQQPSISASIKQLETSLDVQLFYRSHRSISLTNAGER 71

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    +  +  LE +   +++S       + ++ +       +   L EF  +YP+I ++
Sbjct: 72  LFADVTRAFELLEQSSTTIRQSVSNDH--VTLSASSAFNNYWMLPRLSEFQKIYPNIDLR 129

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQ---SSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           L   +++ D++++    AIRL         S LI  +L+    +  AAP  +    +  +
Sbjct: 130 LQTSDREPDLTVEPISLAIRLGTGNWAGCDSHLIAEELI----YPVAAPRVMAAAIQLRN 185

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
           I  L    LI   + I +      W          PR   L++N Y  ++Q  + G G A
Sbjct: 186 ITGLLHQRLIHLEEPIRERPSWAQWFGAFGITEQPPR-GGLRLNDYALVLQAAMAGEGFA 244

Query: 243 LLPDYIVKD--NPNLVRIMEDV-ITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
              D++V+      L+    +         Y  + +      + K  R++   
Sbjct: 245 FGWDHVVQPLVQKGLLAARPEWGWKTGKGFYLVWAKDNALLPQAKLVRDWFIE 297


>gi|87122097|ref|ZP_01077981.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
 gi|86162644|gb|EAQ63925.1| transcriptional regulator, LysR family protein [Marinomonas sp.
           MED121]
          Length = 308

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 133/311 (42%), Gaps = 27/311 (8%)

Query: 1   MSFD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTL 59
           M+ D +++  +F  V   GS   AA  L +S S +S++++ LE E+G++L  R  R ++L
Sbjct: 1   MNMDNFERASLFIKVVDQGSLVAAARLLDISPSVVSKRLAELEAELGVQLLRRTTRRISL 60

Query: 60  TEQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLY 119
           TE G   ++    +  + ++   E      +  G L +A    +   +L   + +F   Y
Sbjct: 61  TEAGEAFYKQMRHLKGQWQSLIDETISLGQEAKGVLTLAAPQPVLTRVLLDAVTQFQTGY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAI-RLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN-- 176
           P I++ L   + + D+    AD ++ R    + +++ +   +       +AAP Y  +  
Sbjct: 121 PHIKLVLQSWDYE-DLPNHQADLSLCRKLDTLDTATTVGLPICPYVNRLFAAPTYFNDEA 179

Query: 177 ------------CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQ 224
                        + P ++ +L +H+ +T+G          N  A           + L 
Sbjct: 180 QVLTSQRAVSTSNKMPQTVSDLSQHSCLTYGQQTQNTWRFANGEA-------VDVNANLV 232

Query: 225 VNSYLSIMQYCVLGSGIALLPDYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTG 281
            N+   I+Q  +   GI  +P+ I++       L+ ++  + +  F ++  Y +      
Sbjct: 233 SNNTEVIIQAAIAAKGIIYIPEMIIEAELAQAKLIPVLPSLTSGEFQLWAYYQKLDYVPL 292

Query: 282 KLKAFRNFIFL 292
           K++ F +FI  
Sbjct: 293 KVRVFLDFIKA 303


>gi|329114497|ref|ZP_08243257.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter
           pomorum DM001]
 gi|326696183|gb|EGE47864.1| Putative HTH-type transcriptional regulator YhjC [Acetobacter
           pomorum DM001]
          Length = 261

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 113/266 (42%), Gaps = 11/266 (4%)

Query: 3   FD-WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            D +  L +F  +   GSFT AA    +S+   +  I  LE  +G +L +R  R +  TE
Sbjct: 1   MDRFATLNLFLRIVDRGSFTAAAADCGISRPVATAAIKRLEQRLGTRLLHRSTRHVRPTE 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
           +G+  +R    +   LE      + +S   +G LR      L + +L   L +F+  +P 
Sbjct: 61  EGATYYRRCVAILADLEDA---DRGASGAVAGLLRAHVIGRLARMILLPALPDFMTRHPA 117

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           + + L    + +D+  +  DC +R    +  S +I R L  +     A+P YL     P 
Sbjct: 118 LTVHLGEGERFVDLVREGVDCVVRAGS-LSDSDMIVRPLGVMEEVTLASPTYLARHGMPA 176

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI-SCLQVNSYLSIMQYCVLGSG 240
           S  +L+ H +I F  +  +  +      T    + E  + + L V    +  +   LG G
Sbjct: 177 SPDDLEGHQMIGF--VSSRTGQPLPLEFTRGEDVIERSLPARLLVGGVDTYAEAARLGFG 234

Query: 241 IALLPDYIVKDN---PNLVRIMEDVI 263
           I  +P Y   D+     L+ ++ D  
Sbjct: 235 IVQVPRYGFADDLANGTLIEVLPDFP 260


>gi|302187074|ref|ZP_07263747.1| regulatory protein, LysR:LysR, substrate-binding [Pseudomonas
           syringae pv. syringae 642]
          Length = 307

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 124/297 (41%), Gaps = 13/297 (4%)

Query: 7   KLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKL 66
            L  F   AR  SFT AA +L L+Q ++ RQI GLE  +G++LF R  RG+ LTE G   
Sbjct: 10  ALVSFEAAARHESFTKAANELSLTQGAVCRQIGGLEEFLGVELFRRSRRGVKLTEAGLSY 69

Query: 67  HRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQL 126
            R  ++    +E   + +       +  + +A     G   L   LK+F   +PD+ + L
Sbjct: 70  SRRVAQQLDAVERDTLSVMGQQGANA--IELAVVPTFGTQWLLPRLKDFQHKHPDVTVHL 127

Query: 127 ILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQEL 186
               +    +    D AI        S     +L++ +     +P  L+ C + L  +EL
Sbjct: 128 TNRTRPFLFADTDFDAAIYFGDA-DWSGTHSHRLMSENSMPVCSPSLLEGC-DSLEAREL 185

Query: 187 DKHNLITFGDLIPKCMEDFNWL-ATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
            +  L+          + FN     V R +  PR           + Q  +   GIAL+P
Sbjct: 186 AELPLLQQTTRPYAWRQWFNAQDLDVARDMTGPRYELFS-----MLAQAAMHDMGIALIP 240

Query: 246 DYIVKDNP---NLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWKF 299
            ++++       LV      +  S   +   PE    +  L AFR+++  +AR ++ 
Sbjct: 241 PFLIQRELQEKRLVIANTRSLPGSKAYHLMIPERKVESASLTAFRDWLVEQARTYQL 297


>gi|221200331|ref|ZP_03573373.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
 gi|221206010|ref|ZP_03579024.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221174022|gb|EEE06455.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2]
 gi|221179672|gb|EEE12077.1| transcriptional regulator, LysR family [Burkholderia multivorans
           CGD2M]
          Length = 310

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/298 (22%), Positives = 118/298 (39%), Gaps = 10/298 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S     L  F  VAR GS   AA+ L LS  ++S+ +  LE  + ++LF R+ R L LT 
Sbjct: 4   SIPLAALHTFVEVARCGSMKQAADLLCLSPGAVSQHVRHLEDRLAVRLFERNGRELELTG 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L    +  + ++E+    L  ++ +   +L + TT       L   L  F   YP+
Sbjct: 64  TGRALFDALAGGFREIESAWANLYGANRRVV-RLTVTTTASFANTWLVQRLGAFNAHYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I +    + +D+  DY D AIR     +       ++ T  +    +P  L   R   
Sbjct: 123 IEITIDTRPQLVDLRRDYVDIAIRHGLG-RYPGHASFRIWTPELWPVCSPQLLDRARPIA 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
              +      + +  L      D+                    +    +++  V   GI
Sbjct: 182 QPAD-----CLAYPLLQDADRADWVLWLRAQGIEDPRAQRGASFSDDALLIKAAVASQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           AL+ D   +D      LVR++        + Y    EA ++  K+ AFR+++  +  D
Sbjct: 237 ALVRDIYARDEIAAGRLVRVLARPWPTELSYYVVCNEARRDEWKIVAFRDWLAREIGD 294


>gi|206564168|ref|YP_002234931.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198040208|emb|CAR56191.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 304

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 10/295 (3%)

Query: 2   SFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
           S     L  F  VAR GS   AA+ L +S  ++S+ +  LE  + ++LF R  R L LT 
Sbjct: 4   SLPLAALHTFVEVARCGSMKQAADLLCISPGAVSQHVRNLEDRLAVRLFERTGRELELTG 63

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G  L    +  ++++E     +  ++ +   +L + TT       L   L  F   YP+
Sbjct: 64  TGRALFDQLAGGFNEIEAAWASVHGANRRIV-RLAVTTTASFANTWLVQRLGSFHAAYPE 122

Query: 122 IQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPL 181
           I+I +    + +D+  DY D AIR     +       ++ T  +    +P  L   R   
Sbjct: 123 IEITVETRAQLVDLRRDYVDVAIRHGLG-RYPGHASFRIWTPELWPVCSPQLLDPARPID 181

Query: 182 SIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGI 241
           +  +   + L+   D     +    WL T               +    +++  V G GI
Sbjct: 182 APADCLSYPLLQDADRADWVL----WLRTQGIEDARAPRGA-SFSEDALLIRAAVAGQGI 236

Query: 242 ALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           AL+ D   +D      LVR++       F+ Y    E  ++  K+ AFR+++  +
Sbjct: 237 ALVRDIYARDEVAAGRLVRVLARPWPTEFSYYVVCSEVRQHEWKIAAFRDWLARE 291


>gi|254229634|ref|ZP_04923045.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262393828|ref|YP_003285682.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|151937833|gb|EDN56680.1| LysR substrate binding domain protein [Vibrio sp. Ex25]
 gi|262337422|gb|ACY51217.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|328474678|gb|EGF45483.1| transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 286

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 123/300 (41%), Gaps = 19/300 (6%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M+  +D + +F      G  + AAE   L +S +SR++  LE  +G++L  R  R + LT
Sbjct: 1   MNVSFDDIYLFTQTVVHGGISAAAEANQLQRSKVSRRLQELEKSLGVQLLIRTTRSIELT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQN-LLQGNLKEFLLLY 119
           E G +L  +  +    ++     + E   + +GK+R+A    L  +      + E+   Y
Sbjct: 61  EHGKRLFELVGQPIDHIQQGLNAMHEYQQELTGKVRLAIPSALMSSAAFNAIITEYTTRY 120

Query: 120 PDIQIQLILDNKDIDISMDYADCAIRLRKP-IQSSSLIQRKLVTIHMHAYAAPHYLKNCR 178
           PDI +++    + +D+     D  +      +   S +Q  L+    H  A+  YL++  
Sbjct: 121 PDISVEIENHQESVDLKRQSFDLQLLPSVVKVTDDSYVQFSLLPYRSHFVASKAYLESHP 180

Query: 179 EPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLG 238
              ++++L +H L+T          D +                L+ +    +    + G
Sbjct: 181 PVKTVEDLKQHRLLTNRYNADLLDSDLH--------------VALRSDDLNLLRSMAIAG 226

Query: 239 SGIALLPDYI---VKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           +GIA +P         +  LV ++     P   +   YP AL    K+KA    I  K +
Sbjct: 227 NGIAFIPQIHSKPALRDGLLVEVLPQFAHPKQHLTLIYPSALFLPNKVKALIELIREKFK 286


>gi|224825576|ref|ZP_03698681.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
 gi|224602497|gb|EEG08675.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002]
          Length = 314

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 14/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
              L  F   AR  +FT AA +L  +Q ++S ++  LE+E+G+ LF R  RG++LT  G+
Sbjct: 10  LHTLLYFEAAARHLNFTAAAAELGSTQPAVSLRVGQLESELGVPLFTRRHRGVSLTADGA 69

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +L     +    +     E+     +P   L +AT        L   L       P++++
Sbjct: 70  RLFEAVRQGLDLIGEVTGEILARRRQPL--LTLATDFGFAAYWLMPRLPALREEMPELEV 127

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKN---CREPL 181
           ++I   + ID+  +  D AI   +       +  KL+   +    +P +L      RE +
Sbjct: 128 RIITSQQAIDLRDEVIDVAIAFGEG-HWPGCVAEKLLPESVVPVCSPSFLAASDWRRETI 186

Query: 182 SIQELDKHNLITFGDLIP-KCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
              E+    L+      P + M+  +W      P   P    L  N+Y  ++Q  + G G
Sbjct: 187 PWAEV---PLLHLERPTPARWMDWPDWFQRHRLPDHHPGHD-LTFNNYPLVLQAAMSGQG 242

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNF 289
           +AL    +V+D      LV +++  IT     +    E+ + TG +  FR +
Sbjct: 243 VALGWLPLVQDLLAGGQLVSLVDAPITTPRGYFLVLRESTRLTGVIGRFRRW 294


>gi|126737613|ref|ZP_01753343.1| Transcriptional regulator [Roseobacter sp. SK209-2-6]
 gi|126721006|gb|EBA17710.1| Transcriptional regulator [Roseobacter sp. SK209-2-6]
          Length = 296

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 136/293 (46%), Gaps = 7/293 (2%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M  D  ++ +F   A  GSF  AA +L LS S +S  IS LE+++G+ L YR  R L+LT
Sbjct: 1   MIDDLRQIAIFAKTADLGSFRKAAAELRLSPSVVSHHISQLESKLGVALLYRTTRRLSLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
            +G +L +    +    E+    LQ+++ +P G +R+     L  + L   +  +   +P
Sbjct: 61  GEGERLLQAGRTMLEAAESGLNALQQTAAEPQGMIRVTIPSVLSPSPLAERISGYCRQFP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
            + + L   ++  D+  D+ D AIR+  P +  +  +R L +      A+  Y+    + 
Sbjct: 121 RVVLDLEFSDERRDLIADHFDVAIRMG-PGRKRAANRRSLFSARRLLVASSTYMAGQDQI 179

Query: 181 LSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSG 240
           L+ ++L++   I F    P  + +                + + VN   ++ Q    GSG
Sbjct: 180 LAPKDLERLEGIDFA---PARLLNSRLRKEGAEDTSFKLKTQITVNDAQALYQLARTGSG 236

Query: 241 IALLPDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFI 290
           +A +P+++  ++     +  ++ D    S  V+  +P +    G +++F + +
Sbjct: 237 VAAVPEFLATEDLASGKICHLLPDWELDSLEVFAEWPASAPRGGIVRSFVDAL 289


>gi|172061962|ref|YP_001809614.1| DNA-binding transcriptional activator GcvA [Burkholderia ambifaria
           MC40-6]
 gi|171994479|gb|ACB65398.1| transcriptional regulator, LysR family [Burkholderia ambifaria
           MC40-6]
          Length = 294

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 125/292 (42%), Gaps = 13/292 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
           +  LR F   AR  SF+ A ++LH++  +ISRQI+G E  +G  +F+R+ + + LT++G 
Sbjct: 8   FSALRAFEAAARHESFSAAGDELHVTHGAISRQIAGFEAWLGKPVFHRYGKRVRLTDEGR 67

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
           +        +  +     +L+ +       LRI          L   L  F    P++++
Sbjct: 68  RYLDTVRAAFDSIALATEQLRNTGAAR--VLRINALPTFAMKWLLPRLSRFQRDVPNVEL 125

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
           +L   N  +D ++D  D AIR R P    +      +   +    +P  LK         
Sbjct: 126 KLSTSNAPLD-ALDGFDVAIR-RGPGHWPNCTSGHFLDESVIPVCSPALLKRA-PITRAD 182

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
           +L +H L+   D  P+   D+ + A    P G  R S    + +   +Q  V G G+AL 
Sbjct: 183 DLARHVLLH-SDTRPEGWRDW-FAAAGVTPKGRKRQS---FDHFYLALQAAVDGLGVALG 237

Query: 245 PDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLK 293
           P  ++ D   +  LV  ++     + + ++  P A      +  F  ++  +
Sbjct: 238 PLPLIDDELASGRLVMPLDGPRIATRSYWWIAPRAPAEDPLVAQFCAWLQAQ 289


>gi|229591484|ref|YP_002873603.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363350|emb|CAY50480.1| probable LysR-family transcriptional regulator [Pseudomonas
           fluorescens SBW25]
          Length = 294

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 116/296 (39%), Gaps = 7/296 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LR+   +AR  S + AA  L++S  ++S ++  LET +G+ L  R AR L+LT  
Sbjct: 2   ISIEDLRLAATLARCESLSAAARVLNVSPPALSMRLRKLETLLGLTLANRDARRLSLTAD 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  R ++ +  +LE      ++      G LR+A     G+  +   L  F  ++P +
Sbjct: 62  GERFSRESALLLEQLEALPESFRQKDETLVGTLRLAAPFGYGRQRIAPLLARFARVHPQL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
            + L L           +D  I +   +  S    R+L        A+P YL+    P S
Sbjct: 122 CLHLDLRETPW-PDRHDSDAVIHIGH-LNDSLWTGRQLTPNERWLCASPAYLQAHGVPSS 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  I   +           L              L  N      ++   G G+ 
Sbjct: 180 PDQLAEHRCICIRENDEDVTLWH--LRKGQGRKTLRVEPALLSNDGSVARRWAEQGLGLV 237

Query: 243 LLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKAR 295
           L   + V D   + +LVR++ D    S  +    P     + +++A   F+    +
Sbjct: 238 LRSQWDVSDAIASGSLVRVLADWSFDSAPIVLLVPSRKLRSPRVQALVAFLEEALK 293


>gi|206579151|ref|YP_002239793.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
 gi|206568209|gb|ACI09985.1| transcriptional regulator, LysR family [Klebsiella pneumoniae 342]
          Length = 297

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 128/294 (43%), Gaps = 14/294 (4%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR F  VAR GS T AA +L ++ S++S+ I  LE  VG+ LF RH RG+ +TE+G    
Sbjct: 10  LRSFEAVARLGSVTQAAHELSVTHSAVSQHIKQLEALVGVTLFIRHGRGVRITEEGRLYA 69

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
               E    +      +Q        ++ +AT    G + L   L  F   +P I ++L+
Sbjct: 70  LQIREALQHIADATRMVQIKPRTL--EVTLATLPSFGCHWLLPRLARFQARHPQIAVRLL 127

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                +++  +  D AIR+ +      +  R L        AAPHY ++   P + Q + 
Sbjct: 128 TSLAVVNLQQEGIDLAIRMGQG-DWEGMESRHLFADEQLVVAAPHY-RSGDLPTTPQAIA 185

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
             ++I       +    +   A +++PI     S L++N    +++   LG+G+AL    
Sbjct: 186 ASDII----FSMESWHAWCSQAGLEKPI---VPSGLRLNDSNLVLEAVRLGAGVALERRS 238

Query: 248 IVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARDWK 298
           +V        LV++    +   +  +       +N  ++  F  ++  +   W+
Sbjct: 239 LVAGAIARGELVQLTAVTVPYPWHYWLTLSPQAENRPEVARFIAWLGEEIALWR 292


>gi|119094203|gb|ABL61025.1| transcriptional regulator [uncultured marine bacterium HF10_25F10]
          Length = 300

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/298 (25%), Positives = 137/298 (45%), Gaps = 14/298 (4%)

Query: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60
           M ++ D L  F  VA  G  + AA +L   +S+ISR I+ LE ++G++LF R  R L LT
Sbjct: 1   MKWNVDHLPAFVAVAEIGGISVAARRLGKPKSTISRAIARLEEDIGLQLFVRGPRSLRLT 60

Query: 61  EQGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYP 120
             GS+ ++    +  ++E    EL   S  P G L +A  +   + ++  +L  F   YP
Sbjct: 61  HDGSQFYQHAVRILEQVEAASAELAGLSETPRGTLSVALPMAFAREIVGPHLARFQAEYP 120

Query: 121 DIQIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREP 180
           DI++ L + +   D+  D  D A+ +   +  S LIQ++L+   +   A+P       E 
Sbjct: 121 DIRLDLRIGSGQPDLIRDAIDMAVIVGS-VTDSDLIQQRLINTPLIWIASPEVAATLPES 179

Query: 181 LSIQELDKHNLITFGDL----IPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
             + EL   +LI+  +      P  + D N      +  GE     +QVN  + + ++  
Sbjct: 180 PGLDELA--SLISAVETRYGETPVTVVDKNGAIRDIKLQGE---QVMQVNDPILLREFVC 234

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITP-SFTVYFCYPEALKNTGKLKAFRNFI 290
              G++  PD   +    + +LV++   +      ++   +P+      K + F +F+
Sbjct: 235 TSGGLSFAPDLYCRAAIRDGSLVKLFPHLQLRQESSLSLLFPDRRLLPKKTQVFMSFL 292


>gi|5916087|gb|AAD55884.1|AF130250_1 hypothetical protein [Cupriavidus necator]
          Length = 249

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 5/247 (2%)

Query: 6   DKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSK 65
           + L  F  VAR+GSF+  A +     SS++RQI  LE E+G+ LF R  R L  TE G  
Sbjct: 8   ENLATFVDVARAGSFSAVARRKGQVASSVARQIDALEREMGVALFTRSTRALVRTEAGDL 67

Query: 66  LHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQ 125
           L    + +  +L  T+  +       SG+LR+A      +  +  +L      YP + ++
Sbjct: 68  LFERATRILQELNETRDAVTALEQGVSGRLRVACLPAFARRHVVPHLGSLYAQYPGLTVE 127

Query: 126 LILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQE 185
           L L ++ +D  ++  D  IR+ +    SSLI R++ +      A P YL+    PL  +E
Sbjct: 128 LELTDRVVDPVLERFDVVIRVGQQ-ADSSLIARRIASQRYIVCATPAYLQAHGRPLHAEE 186

Query: 186 LDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLP 245
           L  H LI              W   +           ++ +   +     + G GIAL+P
Sbjct: 187 LAHHRLI----DRAHSTSMRGWREVLRPAHAASAAFAMECDDCDARRLSVLQGLGIALMP 242

Query: 246 DYIVKDN 252
           D+ V ++
Sbjct: 243 DWSVGED 249


>gi|254451804|ref|ZP_05065241.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
 gi|198266210|gb|EDY90480.1| transcriptional regulator, LysR family [Octadecabacter antarcticus
           238]
          Length = 301

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 124/289 (42%), Gaps = 6/289 (2%)

Query: 4   DWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQG 63
           DW  ++ F +VA  GS + AA +L  SQ ++ RQI  LE ++   LF R ARGL LT+ G
Sbjct: 9   DWSLIQAFLMVAEEGSLSGAARKLGASQPTLGRQIKTLEHQLSASLFTRQARGLELTQTG 68

Query: 64  SKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQ 123
           + L      +   +    +     S + SG +RI  ++      L   + +  LL P I 
Sbjct: 69  AALVAPARAMRDAMGQITLTAAGQSARMSGTVRITASVMTSMYHLPDIIAKIRLLEPAIS 128

Query: 124 IQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSI 183
           I+++  +   ++    AD A+R+ +P Q   L+ + +  I +   A+  YL         
Sbjct: 129 IEVVASDDTRNLLYREADFAVRMYRPTQ-LDLVTQHIGNIPLTICASKSYLARMGPLQGA 187

Query: 184 QELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIAL 243
            +L  H+ + +           +    V R   + R      + + +       G GI  
Sbjct: 188 ADLMHHDFVGYDTNPALIDGFRDIGIEVTRDFFKVR-----CDDHATYWNLVRAGCGIGF 242

Query: 244 LPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
               I KD+ +++ I   V  PS  V+    EA+++T +++     +  
Sbjct: 243 AQGSIAKDDLDVMAIDAGVAIPSLPVWLVAHEAMRHTPRIRRVWELLSE 291


>gi|186472151|ref|YP_001859493.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184194483|gb|ACC72447.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 308

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 114/292 (39%), Gaps = 6/292 (2%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           L  F   AR  SFT AA +L  +Q ++S++I  LE ++G  LF R  RG+TLT +G+ L+
Sbjct: 13  LSAFESAARLASFTAAARELGSTQPAVSQRIVQLEEDLGAPLFERGHRGVTLTPEGALLY 72

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                    +     +++      +G L I T        L   L       P + ++++
Sbjct: 73  EAVRSGLDTIRVATSDIRARRA--TGALTILTDAGFATYWLMPRLARLKASMPGVNVKIV 130

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
                 D   D+AD AI              +L    + A  +P +        +  +L 
Sbjct: 131 TSQLGYDPHRDHADIAIAFGDG-HWPPCTSTRLFAEAVTAVCSPAFRHLHPAVHTAADLA 189

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+      P+    +N                +  NSY  ++Q  ++G G+AL    
Sbjct: 190 ELPLLHVQPTEPERWLAWNSWFAAHGLAAPGESQGMMFNSYSLVVQAALMGQGVALGWTP 249

Query: 248 IVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           +  +      LVR+++  +T     Y   P A      +  FR ++F +  D
Sbjct: 250 LTDELVATGQLVRLLDTPVTTERGYYLVCPPARPAPAAVPLFRRWLFNELVD 301


>gi|15598906|ref|NP_252400.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116051708|ref|YP_789453.1| LysR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890013|ref|YP_002438877.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254236621|ref|ZP_04929944.1| hypothetical protein PACG_02624 [Pseudomonas aeruginosa C3719]
 gi|254242403|ref|ZP_04935725.1| hypothetical protein PA2G_03150 [Pseudomonas aeruginosa 2192]
 gi|296387781|ref|ZP_06877256.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313109116|ref|ZP_07795087.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9949876|gb|AAG07098.1|AE004790_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115586929|gb|ABJ12944.1| putative LysR-family transcriptional regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126168552|gb|EAZ54063.1| hypothetical protein PACG_02624 [Pseudomonas aeruginosa C3719]
 gi|126195781|gb|EAZ59844.1| hypothetical protein PA2G_03150 [Pseudomonas aeruginosa 2192]
 gi|218770236|emb|CAW25998.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310881589|gb|EFQ40183.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 301

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 8/290 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
           FDW+ LR F  + RSG    AA++L  + ++++R I  +E ++G +LF +H  G  LT  
Sbjct: 2   FDWNDLRFFLELQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTPA 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G  L +    + +     Q E+ +S   P G++RI  T  LG   L   L + +  YP +
Sbjct: 62  GQALLKHAEAMENTALLAQEEMSQSIS-PLGQIRIGVTEGLGSVFLAPRLAQLMRHYPGL 120

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           +++L+   + + I+   AD AI L +P     +I R L    +  +A+P YL+       
Sbjct: 121 EVELVSVPRFVSITNREADIAISLDRPSAD-LVITRLLTRYRLALFASPAYLEQAPPLRD 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIA 242
             +L +H  I + D +      F+                 +  S ++  Q    G G+A
Sbjct: 180 RDDLGRHQWIGYVDDL-----LFSQELMFHHSFCRHPQVVFRSTSVVAQQQAAQAGIGLA 234

Query: 243 LLPDYIVKDNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFL 292
           +LP ++   +P LV ++ +        +      L  + +L+   +F+  
Sbjct: 235 ILPHFMGSRDPLLVPVLPEESI-QREYWMSTRRELHRSVRLRVVWDFLLE 283


>gi|330446768|ref|ZP_08310419.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490959|dbj|GAA04916.1| bacterial regulatory helix-turn-helix, lysR family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 293

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 129/295 (43%), Gaps = 20/295 (6%)

Query: 3   FDWDKL-RVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTE 61
            DW    + F  V + GS + AA+ L +S S++S+++S LE ++G++L  R  R L+LT+
Sbjct: 1   MDWITCTKSFVAVIQHGSQSKAAKHLDISNSALSKRLSWLEQQLGVQLLKRTTRHLSLTD 60

Query: 62  QGSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPD 121
            G    + +  +  + +    E   ++    G LRI +++     +L   + +F   YP+
Sbjct: 61  AGETFFQRSLLILEQWQQLLHETTATNSDIHGSLRIGSSLTTSNPILINAIAKFAQQYPN 120

Query: 122 IQIQL--ILDNKDIDISMDYADCAIRLRKPIQS---SSLIQRKLVTIHMHAYAAPHYLKN 176
           + I L  +   +  D+++D     I +   I     +S I   L       YA+P YL+ 
Sbjct: 121 VNISLQPVTQGQLPDLALD-----IIISSTIDDFNSTSYIAAPLFETQARFYASPDYLEQ 175

Query: 177 CREPLSIQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCV 236
                S ++L +HN +  G       +        D  I     S    ++  S++   V
Sbjct: 176 YDPLSSPEQLQQHNCLLLGH------QHHQQAYLFDNDIRLLLKSNFITSNPESLIASAV 229

Query: 237 LGSGIALLPDYIVK---DNPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRN 288
            G G+ L   Y V+   ++  L+ ++  +  P  T +  YP+      K K F +
Sbjct: 230 AGMGLILTSPYNVQRELNHGLLIPVLSQLKQPPETTFAYYPKLHYQHEKTKRFID 284


>gi|167576728|ref|ZP_02369602.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis TXDOH]
 gi|257141480|ref|ZP_05589742.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 297

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 7/278 (2%)

Query: 13  VVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSE 72
            +   GSFT AAE L +S+S +S  +S LE E+  +L  R  R +  T+ G+KL+  + E
Sbjct: 2   AIVEKGSFTAAAECLSMSKSLVSEYLSRLEAEIDTQLVMRSTRRIAPTDAGNKLYSASQE 61

Query: 73  VYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKD 132
               L      ++    + +G LR+A         L      F+  +P I+++++ ++ +
Sbjct: 62  FVSGLYDVIGSIRRLRHESTGLLRVAAPSGFSTAHLSSIAATFIHQHPQIELEIVCNDDE 121

Query: 133 IDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLI 192
           ID+  +  D A     P +      + L        A+P Y +    P    +L   + I
Sbjct: 122 IDLVGERVDLAFETGWP-KKKGFRMKMLGAFDQMLVASPEYSRKHAVPRHPDDLPGSHWI 180

Query: 193 TFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN 252
             G L       ++      R +       L+V S L   Q  + G+GI+  PDY+V ++
Sbjct: 181 GHGGLANLS---YSVFGNEGRSVRVQTSGRLKVKSVLLAHQMALAGAGISAFPDYLVAED 237

Query: 253 ---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFR 287
                L R++     P   +Y       + + + + F 
Sbjct: 238 LREGRLHRLLPTWTMPKGGIYAFRTSPRQASVRERLFL 275


>gi|149202582|ref|ZP_01879554.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
 gi|149143864|gb|EDM31898.1| transcriptional regulator, LysR family protein [Roseovarius sp.
           TM1035]
          Length = 303

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 116/292 (39%), Gaps = 11/292 (3%)

Query: 8   LRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLH 67
           LR    + R GS T AA +L  +QS++SRQ+  LE ++G+ L  R  RG+ LT + +   
Sbjct: 14  LRALEALDRLGSATAAAAELSQTQSAVSRQLKTLEDQLGVGLVVRQGRGIHLTPEAADYA 73

Query: 68  RVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLI 127
                     +  Q  L+ ++    G L +A     G   L   L EF  LYP++ I L 
Sbjct: 74  DKIR--GALQQIAQASLKLTTDPAGGSLSLAILPTFGMRWLVPRLAEFARLYPEVTINLS 131

Query: 128 LDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELD 187
              K  +   +  D AI   K          +L T  + A A P +L          +L 
Sbjct: 132 TRLKPFNFVTEPFDAAIHFGKH-DWLGTEALRLRTERVVAVATPEFLAAHAPIERAADLM 190

Query: 188 KHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDY 247
           +  L+            F       + +   ++S    + + +I Q  + G G+ALLPDY
Sbjct: 191 RLPLLQIETRPGAWPAWFE-----AQGVTGAKVSGTIYDQFSTITQAALHGLGVALLPDY 245

Query: 248 IVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKARD 296
           + + +           D    S   Y  +P        L  FR+++  +A D
Sbjct: 246 LAEQDLATGRFRSAWGDKTLISGAYYLVWPVQNARDPALCKFRDWLAGQAED 297


>gi|241762778|ref|ZP_04760842.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gi|241368197|gb|EER62389.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 299

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 126/293 (43%), Gaps = 12/293 (4%)

Query: 5   WDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGS 64
            + L+VF VVAR+ + T AA +L++SQS++SRQ++ LE  +G++LF R   G+ LTE G 
Sbjct: 13  LNPLKVFEVVARTNNLTLAATELNVSQSAVSRQVAVLEEYLGVQLFARERVGVRLTEVGE 72

Query: 65  KLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQI 124
              R     + ++      + +        +R+ T   L    L   L  F   YPD++I
Sbjct: 73  SYARRIGPAFQEISAATAFITQKYSNN--VIRLRTYTTLTARWLIPRLPHFKAQYPDVEI 130

Query: 125 QLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQ 184
            ++  N  +D S +  D AI L       +     L+   +     P +++      + +
Sbjct: 131 SILNSNAPLDFSSEKCDLAIVLGNGTWPGA-EATLLLEDIVEPVCVPGFIEGT---ATPE 186

Query: 185 ELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALL 244
            L    L+       +  +   WL     P        +  +S +   Q  + G GIA+ 
Sbjct: 187 GLRGKRLLVSRY---RKDDWPRWLEYAGMPGMFETAEKMVFSSSILTWQAAMDGLGIAIG 243

Query: 245 PDYIVKDN---PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
             +++  +     LVR     +      Y   P   +++ K+ AF++++  +A
Sbjct: 244 QQHMLDADFQAGRLVRPFARQLRTGQGQYIVTPALQRHSDKIVAFKDWLMREA 296


>gi|239820835|ref|YP_002948020.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
 gi|239805688|gb|ACS22754.1| transcriptional regulator, LysR family [Variovorax paradoxus S110]
          Length = 305

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 116/297 (39%), Gaps = 7/297 (2%)

Query: 3   FDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQ 62
              + LR+   + R  S + AA  L ++  ++S ++  LE  +G+ L  R +R L LT +
Sbjct: 2   MQIEDLRLAAALLRESSLSAAARSLGVTPPALSMRLRKLEASLGLVLANRTSRKLHLTSE 61

Query: 63  GSKLHRVTSEVYHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDI 122
           G +  R   E+  K +  +  LQ    + SG LR+A +   G+  +   L  F  L+P +
Sbjct: 62  GERFGREAYELLLKFDGLRESLQRDDRRLSGTLRVAASFGYGRTHVAPWLSRFSRLHPAL 121

Query: 123 QIQLILDNKDIDISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLS 182
           ++QL L           +D  + +   ++ SS +   L +      A+P YL+    P +
Sbjct: 122 RLQLDLRETPW-PDKHDSDAVVHVGA-VRDSSWVAHPLASNERWLCASPGYLREHGTPRN 179

Query: 183 IQELDKHNLITFGDLIPKCMEDFNWLATVDRPIGEPRI--SCLQVNSYLSIMQYCVLGSG 240
             +L  H  I   +            A      GE          N      Q+   G G
Sbjct: 180 PADLAYHACICIRENDEDVTLWHMRPAGSGARKGETLRINPAFVSNDGSVARQWAEDGLG 239

Query: 241 IALLPDYIVKD---NPNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
           I L   +   +      L R+M D    +  V    P     + +++A  +F+   A
Sbjct: 240 IVLRSQWDAAEALAAGRLERVMADWEFGAAPVVVLVPTRKGRSARVQALVSFLVEAA 296


>gi|325277656|ref|ZP_08143231.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097212|gb|EGB95483.1| LysR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 279

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 118/284 (41%), Gaps = 12/284 (4%)

Query: 14  VARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLTEQGSKLHRVTSEV 73
           VAR  +F  AAE+L ++Q+++++Q+ GLE  +G++LF R  RGL LT+ G          
Sbjct: 2   VARHLNFRLAAEELGVTQAAVAQQVRGLEASLGLRLFERLPRGLALTDAGLGYSASIRNA 61

Query: 74  YHKLETTQIELQESSVKPSGKLRIATTIDLGQNLLQGNLKEFLLLYPDIQIQLILDNKDI 133
              ++     L+  +      L ++ T       L   L  F   +PDI ++++  ++  
Sbjct: 62  LAMIDEATRLLRPQAAH----LTVSVTPTFASKWLIPRLGAFAERHPDIDLRVLATDRLS 117

Query: 134 DISMDYADCAIRLRKPIQSSSLIQRKLVTIHMHAYAAPHYLKNCREPLSIQELDKHNLIT 193
               D  D A+R   P   + L   +L+   + A A+P   K    P S  +L    ++ 
Sbjct: 118 HFGTDSVDVAVRYGNPDVGAGLNSERLMEQRIVAVASPALFKGAHAPTSFAQLQAFVMLH 177

Query: 194 FGDLIPKCMEDFNWLATVDRPIGEPRISCLQVNSYLSIMQYCVLGSGIALLPDYIVKDN- 252
                        +LA +    G+P    L+ N     +   + G GIAL     V ++ 
Sbjct: 178 DAHDF-----WPRFLAELFPQHGQPSARNLRFNQTSLAIDAALSGQGIALASLAFVNEDI 232

Query: 253 --PNLVRIMEDVITPSFTVYFCYPEALKNTGKLKAFRNFIFLKA 294
               L ++ +  +    + Y  +P  L+    L     ++  +A
Sbjct: 233 AAGRLSQVFDHELRLDKSFYLVWPRKLQQPKALGTVLQWLKDQA 276


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.172    0.526 

Lambda     K      H
   0.267   0.0526    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,076,436,008
Number of Sequences: 14124377
Number of extensions: 389875801
Number of successful extensions: 1356345
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 81697
Number of HSP's successfully gapped in prelim test: 4652
Number of HSP's that attempted gapping in prelim test: 1161900
Number of HSP's gapped (non-prelim): 90508
length of query: 299
length of database: 4,842,793,630
effective HSP length: 138
effective length of query: 161
effective length of database: 2,893,629,604
effective search space: 465874366244
effective search space used: 465874366244
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 81 (35.5 bits)